BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780823|ref|YP_003065236.1| double-strand break repair
protein AddB [Candidatus Liberibacter asiaticus str. psy62]
         (1040 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
            asiaticus str. psy62]
 gi|254040500|gb|ACT57296.1| double-strand break repair protein AddB [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1040

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 1040/1040 (100%), Positives = 1040/1040 (100%)

Query: 1    MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
            MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL
Sbjct: 1    MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
            RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR
Sbjct: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
            NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW
Sbjct: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
            WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP
Sbjct: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
            ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL
Sbjct: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
            DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA
Sbjct: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP
Sbjct: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK
Sbjct: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
            NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN
Sbjct: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
            KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA
Sbjct: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK
Sbjct: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
            NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL
Sbjct: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
            VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN
Sbjct: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
            DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID
Sbjct: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
            SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG
Sbjct: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900

Query: 901  FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
            FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL
Sbjct: 901  FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
            FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI
Sbjct: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020

Query: 1021 QSEYDHLARVAEWREEYDIS 1040
            QSEYDHLARVAEWREEYDIS
Sbjct: 1021 QSEYDHLARVAEWREEYDIS 1040


>gi|315122047|ref|YP_004062536.1| double-strand break repair protein AddB [Candidatus Liberibacter
            solanacearum CLso-ZC1]
 gi|313495449|gb|ADR52048.1| double-strand break repair protein AddB [Candidatus Liberibacter
            solanacearum CLso-ZC1]
          Length = 1050

 Score =  733 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 755/1050 (71%), Positives = 881/1050 (83%), Gaps = 10/1050 (0%)

Query: 1    MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
            M NKKPN+FTIAPSS FFREM+ +LLNGTLVE+F+YDP NPL LAS+TIYVPTKRAIQ L
Sbjct: 1    MENKKPNIFTIAPSSSFFREMVLSLLNGTLVESFQYDPSNPLSLASITIYVPTKRAIQAL 60

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
            RSEF    G+KS ILP+IK LGD+V+E F  D  LS NLNPP+SN++RLLELARLIL WR
Sbjct: 61   RSEFTAAIGEKSIILPVIKPLGDIVDENFNTDFPLSCNLNPPISNMKRLLELARLILAWR 120

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
            N+ P+ IKD+YPESPL LP SPA+AIWLAKNLADIID+IE EEKKWEDL+ L+N+KYGMW
Sbjct: 121  NQFPNKIKDIYPESPLILPASPADAIWLAKNLADIIDVIEIEEKKWEDLYTLENDKYGMW 180

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSI 239
            WL A DFLKIAS+YW +RL EL+ SS V YQIALMRAEAE++ K    GPII+AGSTGS+
Sbjct: 181  WLFALDFLKIASEYWKDRLSELSVSSAVHYQIALMRAEAEYIAKRKGTGPIIVAGSTGSM 240

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATARLMS VA+ PNGAIVLPG+D  +P+ IW+TI+EKS NIT SN T+  +PQYSL+KL
Sbjct: 241  PATARLMSAVASDPNGAIVLPGVDVFMPSNIWDTISEKSNNITQSNATHPMNPQYSLSKL 300

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            L FL IKREDVK LG V++EM  RS++ISKSF P  + +  +TD +E+KI ++QK FSDV
Sbjct: 301  LHFLKIKREDVKCLGIVNDEMRMRSIIISKSFFPSGSFNTYDTDRMEDKILDLQKSFSDV 360

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKS-ALITADRNLARRVKLELTRFGINIDISAG 418
            ALIEA+NEREEA SIAIALRMSLDENKK   ALITADRNLARRVKLEL RFGI++DISAG
Sbjct: 361  ALIEANNEREEATSIAIALRMSLDENKKTKSALITADRNLARRVKLELIRFGIDVDISAG 420

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
            IPLSTTL  SILTSLLNA+FK ND MA+A L+KHPLA FGFPEK+L +AKNALEL+ALRG
Sbjct: 421  IPLSTTLQGSILTSLLNAVFKTNDPMALAVLIKHPLATFGFPEKHLFKAKNALELIALRG 480

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
            N+N  DI+DLKSLV+++I  QKN+ ++P WQSRLSEEDK+L++ L DHI++ I PL  YK
Sbjct: 481  NRNPCDIIDLKSLVINKINEQKNDKYIPRWQSRLSEEDKKLSLWLADHIVKSIAPLAVYK 540

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
             N+NS   +LS  DWT+LT  CLQNVCLDE++KLP+LW  EEGK LS+LFSKIIE G CI
Sbjct: 541  MNENSIGDSLSTPDWTELTAACLQNVCLDENKKLPSLWLAEEGKALSALFSKIIEAGPCI 600

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
            KANAIEWIDIIT LI GETVKPKIEKSST+FILGTLESRLLNFDTLILGGLNEG+WPK T
Sbjct: 601  KANAIEWIDIITALIAGETVKPKIEKSSTIFILGTLESRLLNFDTLILGGLNEGIWPKYT 660

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
             KNPFLSR+MQSDL L+TAEKYIGQAAHDFEMA+GTRHLIYTRSL+ENNIPT+ASRWLQR
Sbjct: 661  PKNPFLSRMMQSDLGLETAEKYIGQAAHDFEMASGTRHLIYTRSLQENNIPTVASRWLQR 720

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY-KRPKPFPPLEAQPRTYSFSEIKQ 777
            LLV GG  F ++LKK+G+ YLDW R+LD +TK+    KRP+PFPPLE QP+TYSFSEIK+
Sbjct: 721  LLVFGGNAFSNDLKKKGERYLDWARRLDDSTKKQIICKRPRPFPPLETQPKTYSFSEIKK 780

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L++DPYA+YA++IL+LDF+P FK DP+  DRG LFH I+T LI+++INKNTPEI   MK 
Sbjct: 781  LMSDPYAIYAQKILRLDFMPRFKNDPNPKDRGILFHKIVTGLIEEKINKNTPEITRRMKD 840

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
            IIDS FEKENLPPHIDIIWR+LFHKI+  FLE+EE+ Q  IEK  VN+PAKM I+SIGIH
Sbjct: 841  IIDSCFEKENLPPHIDIIWRYLFHKIALPFLEYEEQRQPLIEKTIVNVPAKMKIDSIGIH 900

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
            LTG ADRID+LKSG+ DI DYKTG+NP K+ AQ LIDPQLSLEA ALKAGSFSQIDCR+V
Sbjct: 901  LTGIADRIDILKSGYADIIDYKTGNNPTKKIAQNLIDPQLSLEAVALKAGSFSQIDCREV 960

Query: 958  ANLFYIRLKQKFK-------IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
              L YIRLK   K       IDCI  ++K  SADELSE+SLKN IEI+  LQ+G++PFIS
Sbjct: 961  GKLVYIRLKLDHKRLKPRLIIDCIAGNEKDLSADELSEESLKNFIEIIKSLQSGKKPFIS 1020

Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYDIS 1040
            HLR SE +NI SEYDHLARV EW+E YD S
Sbjct: 1021 HLRFSENANIPSEYDHLARVEEWKENYDAS 1050


>gi|240849706|ref|YP_002971094.1| double-strand break repair protein AddB [Bartonella grahamii as4aup]
 gi|240266829|gb|ACS50417.1| double-strand break repair protein AddB [Bartonella grahamii as4aup]
          Length = 1039

 Score =  707 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1044 (34%), Positives = 568/1044 (54%), Gaps = 25/1044 (2%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            KP VF+I+P + F    + ALL+G+L++NF         LA   IYVPT+RA + LR  F
Sbjct: 4    KPRVFSISPGTAFLPHFVDALLSGSLIDNFASSGDIQTALADSLIYVPTRRAARALRLAF 63

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
            +E +  +ST LP I++LGDV E+ F      +  L+PP+   +RLL LARLI  WR  LP
Sbjct: 64   VERSDTQSTFLPTIRALGDVDEDSFLFVENHTSTLDPPIGESERLLLLARLIRPWRENLP 123

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184
              ++ ++    + +P   A+AIWLA++LA ++D IETE   W  L  +  +    WW + 
Sbjct: 124  AHLRAMFGTEDVLIPAHSADAIWLAQDLAHLMDEIETEGADWSKLKNIAPDMVAEWWQIT 183

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIPATA 243
             DFL I ++ W + L E   S+P  ++   +   AE L +     P+I AG +GS+PA +
Sbjct: 184  LDFLTIVTQNWPKILTERQRSNPAEWRNQALTMHAETLRRMPPDKPVIAAGVSGSMPAVS 243

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-----THPQYSLAK 298
             L+  +A+ P GA+VLPGLD H+    WN ++      T+ +         +HPQY L K
Sbjct: 244  HLLKVIASLPKGAVVLPGLDLHMDEEQWNALSTSHKEKTACDFFDPAENVFSHPQYHLKK 303

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
            LL  ++ +R  V  +G  S     R  ++S++  P  T+D +   I+ +   N+    +D
Sbjct: 304  LLTLMECQRHHVCEIGQQSITKKRRMAILSEALRPASTTD-KWIQIVRDDYENL---CAD 359

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
             + IEA NEREEA++IA+ LR +++E +K +ALIT DRNLARRV +EL RFGI  + S+G
Sbjct: 360  WSFIEAINEREEALAIAVTLRKAIEEPQKTAALITNDRNLARRVAVELQRFGIEANDSSG 419

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
            IPL+ TL  ++L  +L  + + +D +A  +L+KHPL         L       EL  LRG
Sbjct: 420  IPLAQTLPVTLLRLILENVLQPDDPIAFLSLLKHPLTTLQQNRHRLREMAENFELFILRG 479

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
            N    ++ +    +   I T     H     + L ++  E A  L   + + + PL +  
Sbjct: 480  NTGRINLCECDQFLEKWIETH---FHNSSEINALDQQKCEEARFLCHLLRKAVEPLTSLM 536

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
              +       +I++    TV   +N   +E   L +L+  E G+ LS    +++   S +
Sbjct: 537  KKEKE----CTITEAAIATVEVFENFGRNEDNSLAHLYQHEAGQALSKFLRELVSDQSGL 592

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
              +  EW  + + +I   +V P       LFI GTLESRL   DT+++GGLNEG WP +T
Sbjct: 593  TFHLCEWPAMFSAIIATRSVTPSPGGHPRLFIWGTLESRLQTVDTVVIGGLNEGSWPIST 652

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
              + FLSR M+  L L+  E+ IG +AHDF+ A G   ++ +R+LR N+ P+I SRWLQR
Sbjct: 653  RNDAFLSRPMKMMLTLEPPEQRIGLSAHDFQWAMGMDKVVMSRALRVNHTPSIPSRWLQR 712

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            +    G   +  +++RG+    W + LD+T+     +RP P PPL+ +PR +S +EI+ L
Sbjct: 713  METAVGKQVWKKIRERGEILRHWAKMLDHTSITSEVERPCPAPPLDIRPRHFSVTEIETL 772

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
              DPYA+YA++IL+L  +     DP  ++RGTL+H I+     +  N N     +++  I
Sbjct: 773  RYDPYAIYAKKILRLKPLKELIHDPSASERGTLYHAILAAFCTQIKNPNAANALNVLLSI 832

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                F+K N PP I++IW + F  ++   ++ E+ +        V +  K+ I + G+ L
Sbjct: 833  GRKEFDKFNFPPDIEVIWWNSFENLAPRLIQWEQSLGLRERYSEV-VSQKIPIGTTGVTL 891

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
            +G ADR+D+L    V+I D+KTG  P  +  ++L+ PQL+LE A L  G F        +
Sbjct: 892  SGRADRLDVLPDKTVEILDFKTGTPPSSKQVRELLFPQLALETALLIQGGFPDFQDFTPS 951

Query: 959  NLFYIRLKQKFKIDC------ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
            NLFYI L +K +I          + K   SA  L E + +NLI ++T  QN +Q ++SH 
Sbjct: 952  NLFYIPLNKKGEIKSQSILLKKKDGKTHLSAVNLGENAWENLIALITYYQNPQQGYLSHA 1011

Query: 1013 RLSEKSNIQSEYDHLARVAEWREE 1036
                K   + +YDHLAR+ EW   
Sbjct: 1012 VPMSK-RYEGDYDHLARLWEWSSG 1034


>gi|163867330|ref|YP_001608524.1| hypothetical protein Btr_0025 [Bartonella tribocorum CIP 105476]
 gi|161016971|emb|CAK00529.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 1041

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1044 (35%), Positives = 569/1044 (54%), Gaps = 23/1044 (2%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            KP VF+I+P + F    + ALL+GTL+++F  +      LA   IYVPT+RA + LR  F
Sbjct: 4    KPRVFSISPGTAFLPHFVDALLSGTLIDDFAPNGDIQTALADSLIYVPTRRAARALRLAF 63

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
            +E +  +ST LP I++LGDV E+ F      +  LNPP+   +RLL LARLI  WR  LP
Sbjct: 64   VERSETQSTFLPTIRALGDVDEDSFLFVENHTSVLNPPIGESERLLLLARLIRPWRESLP 123

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184
              ++ L+    + +P   A+AIWLA++LA ++D IETE   W  L  +  +    WW + 
Sbjct: 124  AHLRALFGTEDVLIPAHSADAIWLAQDLAHLMDEIETEAADWSKLKDIAPDMVAEWWQIT 183

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIPATA 243
             DFL I ++ W + L E   S+P  ++   +   AE L +     PII AG +GSIPA +
Sbjct: 184  LDFLTIVTQNWPQILTERQRSNPAEWRNQALTMHAETLRRTQPDKPIIAAGVSGSIPAVS 243

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-----THPQYSLAK 298
             L+  +A+ P GA+VLPGLD H+    WN ++  +   T  +         +HPQY L K
Sbjct: 244  HLLKVIASLPKGAVVLPGLDLHMDEDQWNALSTSNKEKTVCDFFDHAENVFSHPQYHLKK 303

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
            LL  +D +R+ V  +G  S+    R  ++S++  P  T+D     + +    + +   +D
Sbjct: 304  LLTLMDCQRDHVCEIGQQSSIKKRRMALLSEALRPASTTDKWIQIVRD----DYESLCAD 359

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
             + IEA NEREEA++IA+ALR +++E +K +ALIT DRNLARRV  EL RFGI  + S G
Sbjct: 360  WSFIEAINEREEALAIAVALRKAIEEPQKTTALITNDRNLARRVAAELQRFGIEANDSGG 419

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
            IPL+ TL  ++L  +L  +F+ +D +A  +L+KHPL         L       EL  LRG
Sbjct: 420  IPLAQTLPVTLLRLILENVFQSDDPIAFLSLLKHPLTTLQQNRHRLREMAENFELFVLRG 479

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
            N    ++ +    +   I T  ++ H     + L ++  E A LL   + + + PL +  
Sbjct: 480  NTGRINLCECDQFLEKWIETYSHD-HNFSEINALDQQKFEEARLLCHLLKKAVEPLASLM 538

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
              +       +I++    TV   +N    E   L +L+  E G+ LS+   +++   S +
Sbjct: 539  KQEKE----CTINEAAIATVEVFENFGRSEDNSLAHLYQHEAGQALSNFLRELVSDQSGL 594

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
              +  EW  + + LI   +V P       LFI GTLESRL   DT+++GGLNEG WP +T
Sbjct: 595  TFHLCEWPAVFSALIATRSVTPSPGGHPRLFIWGTLESRLQTVDTVVIGGLNEGSWPIST 654

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
              + FLSR M+  L L+  E+ IG +AHDF+ A G   ++ +R+LR N+ P+I SRWLQR
Sbjct: 655  RNDAFLSRPMKMMLTLEPPEQRIGLSAHDFQWAMGMDKVVMSRALRVNHTPSIPSRWLQR 714

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            +  + G   +  ++ RG+    WT+ LD+T      +RP P PPL+ +PR +S +EI+ L
Sbjct: 715  IETVVGKQAWKQIRARGEILRHWTKMLDHTNMISDVERPCPVPPLDGRPRHFSVTEIETL 774

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
              DPYA+YA++IL+L  +     DP   +RG L+H I+     +  N N      ++  +
Sbjct: 775  RYDPYAIYAKKILRLRPLKPLIHDPSAIERGILYHAILAAFCAQIKNPNAANALDVLLTL 834

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                F+K N PP I++IW + F  ++   ++ E+ +        V +  K++I + G+ L
Sbjct: 835  GRKEFDKFNFPPDIEVIWWNSFENLAPHLIQWEQSLGPRERYAEV-VSEKISIGTTGVTL 893

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
            +G  DR+D+L    V+I D+KTG  P  +  +KL+ PQL+LE A L  G+F        +
Sbjct: 894  SGRVDRLDVLPDKTVEILDFKTGTPPSSKQVRKLLFPQLALETALLMEGAFPDFQDLTPS 953

Query: 959  NLFYIRLKQKFKIDC------ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
            NLFYI L  K +I           +    SA  L E + KNLI ++T  QN +Q ++SH 
Sbjct: 954  NLFYIPLNGKGEIKSQSILLKKKEENTYLSAVNLGEIAWKNLIALITYYQNPQQGYLSHA 1013

Query: 1013 RLSEKSNIQSEYDHLARVAEWREE 1036
               EK   + +YDHLAR+ EW   
Sbjct: 1014 VPMEK-RYEGDYDHLARLWEWSSG 1036


>gi|49474857|ref|YP_032898.1| hypothetical protein BH00280 [Bartonella henselae str. Houston-1]
 gi|49237662|emb|CAF26844.1| hypothetical protein BH00280 [Bartonella henselae str. Houston-1]
          Length = 1040

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1043 (35%), Positives = 566/1043 (54%), Gaps = 24/1043 (2%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            KP VF+I+  + F    + ALL+  L+++F  +      LA   IYVPT+RA + LR+ F
Sbjct: 4    KPRVFSISSGTAFLPHFVDALLSSALIDDFAPNGDIQTALADTLIYVPTRRAARALRTAF 63

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
            +E +  KST LP I++LGDV E+ F      +  LNPP+   +RLL LARLI  WR  LP
Sbjct: 64   VEKSDTKSTFLPTIRALGDVDEDSFLFGENHNNILNPPIEESERLLLLARLIRPWRENLP 123

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184
            D ++ ++    + +P   A+AIWLA++LA ++D +ETE   W  L  +  +    WW + 
Sbjct: 124  DHLRTMFGTEDVLIPAHTADAIWLAQDLAHLMDEMETEATDWSKLKEIAPDMVAEWWQIT 183

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATA 243
             DFL I ++ W + L E   S+P  ++  +++  AE         PI+ AG +GSIPA +
Sbjct: 184  LDFLTIVTQSWPQILKERGRSNPAEWRNQVLKMHAETLWRTQPNKPILAAGVSGSIPAVS 243

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST-----NITSSNTTYSTHPQYSLAK 298
             L+  +A+ P GA+VLPGLD H+    W  +   +      N+        +HPQY   K
Sbjct: 244  HLLKVIASLPKGAVVLPGLDLHMDEEQWEALGTINEKKTICNVFDRTANAFSHPQYHFKK 303

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
            LL  +  +R  V+ +G  S     R+ ++S++  P  T++     + +    + +    +
Sbjct: 304  LLSLIGCQRIHVREIGQQSAIKKKRTALLSEALRPASTTERWVQIVRD----DYENLCEN 359

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
             + IEA NEREEA++IA+ALR +++E +K +ALIT DRNLARRV  EL RFGI  + S G
Sbjct: 360  WSFIEAINEREEALAIAVALRNAIEEPQKTAALITNDRNLARRVAAELQRFGIEANDSGG 419

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
            IPL+ TL +++L  LL  +F+  D +A  +L+KHPL   G     L       EL  LRG
Sbjct: 420  IPLAQTLPATLLRLLLENVFQSGDPIAFLSLLKHPLTTLGQNRHRLREMAENFELFVLRG 479

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
            N +  ++ +               +H     + + +++ E A LL   +++ + PL +  
Sbjct: 480  NTSCINLCECDKFFETWTE---IYSHKISETNVIDQQNCEEARLLCHLLVKAVEPLASLM 536

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
              K     N ++    ++     +N   DE+  L +L+  E G+TL +   +++   S +
Sbjct: 537  KQKKECTVNEAMVATVEVF----ENFGRDENNSLAHLYQHEAGQTLLTFLRELVSDQSGL 592

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
            K    EW+ I + LI   +V P       LFI GTLESRL   DT+++GGLNEG WP  T
Sbjct: 593  KFQLCEWLAIFSALIATRSVTPSPGGHPRLFIWGTLESRLQTVDTVVIGGLNEGSWPITT 652

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
              + FLSR M+  L L+  EK IG +AHDF+ A G   ++ +R+LR N+ P++ SRWLQR
Sbjct: 653  RNDAFLSRPMKIMLTLEPPEKRIGLSAHDFQWAMGMNKVVMSRALRVNHAPSLPSRWLQR 712

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            L  + G   +  ++ RG+ +L WT+ LD+T      KRP P PPL+A+PR +S +EI  L
Sbjct: 713  LETVIGKQVWKQIRARGEIFLHWTKMLDHTNIIAGAKRPYPVPPLDARPRHFSVTEIATL 772

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
              DPYA+YA++IL+L  +      P  ++RG L+H I +    K  N N+  +  ++  I
Sbjct: 773  RYDPYAIYAKKILRLKPLKALIHAPGASERGILYHAIFSAFCTKVKNPNSANVLDVLLNI 832

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                F K NLP  I+ IW + F  ++  FL+ E+ +        V +  K+ I + G+ L
Sbjct: 833  GREEFNKFNLPLDIEAIWWNNFENLAPFFLQWEQSLGPRKRYAEV-VSQKIPIGTTGLTL 891

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
            +G ADRID+L    V+I D+KT   P  +  + L+ PQL+LEAA L  G+F+        
Sbjct: 892  SGRADRIDVLPGKMVEIIDFKTSTPPSSKQVRDLLFPQLALEAALLMQGAFTDFQDLTPV 951

Query: 959  NLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
            NL YI L  K KI         + K   SA +L EK+ K+LI ++   QN +Q ++SH  
Sbjct: 952  NLSYIPLNGKGKIIPQSIFLKKDTKDHQSAMDLGEKAWKHLIALMDYYQNPQQGYLSHAV 1011

Query: 1014 LSEKSNIQSEYDHLARVAEWREE 1036
               K   + +YDHLAR+ EW   
Sbjct: 1012 PITK-RYEGDYDHLARLWEWSSG 1033


>gi|319407900|emb|CBI81554.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 1050

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1047 (35%), Positives = 558/1047 (53%), Gaps = 27/1047 (2%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
             +KP VF+I+P + F    + ALL+GTL+++F  +      L    IYVPT+RA + LR+
Sbjct: 9    TRKPRVFSISPGTSFLPHFVDALLSGTLIDDFAPNGDIQAALVDTLIYVPTRRAARALRA 68

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLS--YNLNPPVSNIQRLLELARLILIWR 120
             F E +  +S+ LP I+ LGD+ EE             LNPP+   +RLL LARLI  WR
Sbjct: 69   AFAERSHTRSSFLPTIRPLGDMDEESSFFVENHDSILTLNPPIKESERLLLLARLIRPWR 128

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ ++    + +P + A+AIWLA++LA ++D +ETE   W  L  +  +    W
Sbjct: 129  ENLPAHLRAIFGTEDVLIPANTADAIWLAQDLASLMDEVETESADWSKLKDICPDMVAEW 188

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSI 239
            W +  DFL I ++ W + L E   S+PV ++   ++ +A+ L +     PII+AG+TGSI
Sbjct: 189  WQITLDFLTIITQNWPQILKEKQRSNPVEWRNQALKIQADILHRTQPHKPIIVAGATGSI 248

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN-----TTYSTHPQY 294
            PA A L   VA  P GA+VLPGLD ++  A W+ +   + + T+ +         +HPQY
Sbjct: 249  PAVAHLSKVVAYLPKGAVVLPGLDLYMDEAQWDALGTMNKDTTTLDCFDHALGAFSHPQY 308

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             L K L  +  +R  V  +G  S     R+ ++S++  P  T+D     + +    + + 
Sbjct: 309  HLKKFLSLMKCQRIHVSEIGQRSIMQTKRAAIVSEALRPVSTTDQWAQIVRD----DYEN 364

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
              +D +LIEA NEREEA++I+IALR +++E +K +ALIT DRNLARRV  EL RFGI  +
Sbjct: 365  VCADWSLIEASNEREEALAISIALRNAIEEPQKIAALITNDRNLARRVVAELQRFGIEAN 424

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
             S GIPL+ T  +++L  LL  +FK  D +A  +L+KHPL   G   + L       EL 
Sbjct: 425  DSGGIPLAHTSPATLLRLLLENVFKPGDPIAFLSLLKHPLTILGQNRQRLREIVENFELF 484

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
             LRGN N  ++ +    +   + T   N            +  E A  L   +++ + PL
Sbjct: 485  VLRGNPNHINLCECDQFLETWVQTYSYNMSDNCPL---DLQKTEEARSLCHLLVKAVEPL 541

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
             +            +I++  + TV   +N   D++    +L+  E GK LS    +++  
Sbjct: 542  ASLIKQDKE----CTINEVARATVEAFENFGRDDNNSFVHLYQNEAGKALSIFLHELVND 597

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
             S +K +  EW  + + LI    V P       LFI GTLESRL   DT++LG LNEG W
Sbjct: 598  QSGLKFHLYEWPAMFSALIATRCVSPSPGGHPRLFIWGTLESRLQTVDTVVLGSLNEGFW 657

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
            P  T  + FLSR M+  L L+  EK IG AAHDF+ A G   ++ +R+ R N+IP++ SR
Sbjct: 658  PSTTRNDAFLSRPMKMTLTLEPPEKRIGLAAHDFQWAMGMNKVVMSRATRVNHIPSVPSR 717

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            WLQRL  + G   +  +  RG+ +L W + LD T       RP P PPL+ +PR +S +E
Sbjct: 718  WLQRLETVVGKQVWKKICSRGETFLHWAKMLDKTDTIGFTPRPCPVPPLDMRPRHFSVTE 777

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
            I+ L  +PYA+YA++IL+L  +      P   DRG L+H I+     +  + N       
Sbjct: 778  IETLRYNPYAIYAKKILRLKPLKALIYSPYAADRGILYHAILAAFCTQIKDPNVAHALAT 837

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
               I    F+K NLPP I  IW  +F   +  F++ E+ +      + V    K  I + 
Sbjct: 838  FLAIGRKEFDKLNLPPDIKAIWWSIFENFAPFFIKWEQNLGPRKRHVEV-AAQKTPIGTT 896

Query: 895  GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
            G+ L+G ADRID+L    V+I D+KT   P  +  + L+ PQL+LEAA L  G+F+    
Sbjct: 897  GVTLSGRADRIDILPDKMVEILDFKTNTPPSSKQVRALLHPQLALEAALLMQGAFTDFQD 956

Query: 955  RKVANLFYIRLKQKFKIDC------ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
               +NLFY+ LK K  I            K + SA  L +++ K LI ++   QN +Q +
Sbjct: 957  LTPSNLFYVPLKGKGPIKSQSIILYQKKAKDQTSAVLLGQEAWKRLITLIEYYQNPQQGY 1016

Query: 1009 ISHLRLSEKSNIQSEYDHLARVAEWRE 1035
            +SH   S     + +YDHLAR++EW  
Sbjct: 1017 LSHALPSPH-RYEGDYDHLARLSEWSS 1042


>gi|121602115|ref|YP_989603.1| double-strand break repair protein AddB [Bartonella bacilliformis
            KC583]
 gi|120614292|gb|ABM44893.1| double-strand break repair protein AddB [Bartonella bacilliformis
            KC583]
          Length = 1047

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1045 (35%), Positives = 562/1045 (53%), Gaps = 25/1045 (2%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            +P +F+I+P +PF    + ALL+G ++ +F  +      LA   IYVPT+RA + LR+ F
Sbjct: 4    QPRIFSISPGTPFLPHFVDALLSGEIIRDFAPNGNIQAALADTLIYVPTRRAARALRATF 63

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
            +E +  +S+ LP I  LG++ E+ F    D   +  ++PP+   +RLL LARLI  WR K
Sbjct: 64   VEKSPTQSSFLPKILPLGNMDEDSFLFTDDYTNALTIHPPIKESERLLLLARLIRPWREK 123

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            LP  ++ ++    + +P + A+AIWLA++LA ++D +ETE   W  L  ++ +    WW 
Sbjct: 124  LPMHLRAIFGTEDVLIPTNTADAIWLAQDLARLMDEVETESADWSKLKEIEPDMVAEWWQ 183

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPA 241
            +  DFL I ++ W   L E   ++PV ++  +++ +A+ L       PII AG+TGSIP+
Sbjct: 184  ITLDFLTIVTQNWPHILKERQLNNPVEWRNQILKMQADILYRTQPNKPIIAAGATGSIPS 243

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT-----TYSTHPQYSL 296
             A L+  +A+ P GA++LP LD  +    WN +   +   T+ +         +HPQY L
Sbjct: 244  IANLLKVIASLPKGAVILPNLDLQMDEEQWNALGLINEETTTFDFLNHASAAFSHPQYHL 303

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
             KLL  +  +R  VK +G  S+    R+ ++S++  P  T+D       +    + +   
Sbjct: 304  KKLLFLMQCQRAHVKEIGQQSSMKKKRAALLSEALRPASTTDQWVQITRD----DYENLC 359

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
            +D++LIEA NE EEA++IAIALR ++++ KK +ALIT DRNLARRV  EL RFGI  + S
Sbjct: 360  ADLSLIEATNEHEEALAIAIALRHAIEDPKKTAALITNDRNLARRVSAELQRFGIEANDS 419

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
             GIPL+ TL +++L  LL  +FK  D +A  +L+KHPL         L       EL  L
Sbjct: 420  GGIPLAQTLPATLLRLLLENLFKPGDPIAFLSLLKHPLTTLEQNRHRLREIVENFELFVL 479

Query: 477  RGNKNSYDIMDLKSLVLDRI--ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
            RG     ++          I   T  +          L  +  E A LL   +++ + PL
Sbjct: 480  RGGTGRINLCTCDQFFETWIKTRTLNSLNANNLNDCSLDPQKSEEARLLCHLLVKAVKPL 539

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
            V+            +I++    TV  L+N   D++  L +L+ +E G+ LS+   +++  
Sbjct: 540  VSLIQQDRE----CTINETIIATVEVLENFGRDDNHSLAHLYQDEAGEALSTFLRELVND 595

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
             S +K +  EW  I + LI   +V P     S LFI GTLESRL   DT+++GGLNEG W
Sbjct: 596  QSGLKFHLYEWPAIFSALIATRSVSPAPGGHSRLFIWGTLESRLQTVDTVVIGGLNEGSW 655

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
            P  T  + FLSR M+  L L+  EK IG +AHDF+ A G   +I +R+ R N++P++ SR
Sbjct: 656  PVTTRNDAFLSRPMKMMLTLEPPEKRIGLSAHDFQWAMGMDKVIMSRATRVNHVPSVPSR 715

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            WLQRL  + G   +  +  RG   L W + LD T      +RP P PPLE +PR +S +E
Sbjct: 716  WLQRLETVIGQQVWKQICARGNTLLYWAKILDTTNMISFVERPCPIPPLEMRPRHFSITE 775

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
            I+ L  DPYA+YA++IL+L  +     DP  T+RGTL+H I++    +  N +  +    
Sbjct: 776  IETLRQDPYAIYAKKILRLKPLKPLIHDPCNTERGTLYHAILSAFCTRIKNPHATDALDT 835

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
            +  I    F+K NLP  I+ IW  +F  ++   ++ E+ +        V    K  I + 
Sbjct: 836  LLTIGREEFDKLNLPSDIEAIWWPMFENLAPLLIQWEQSLGPRKRHAEVEAQ-KTPIGTT 894

Query: 895  GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
            G+ L+G ADRID+L     +I D+K    P       L+ PQL+LEAA L  G+F     
Sbjct: 895  GVTLSGRADRIDILPGKMAEILDFKISTPPSSTQVLTLLSPQLALEAALLMQGAFVDFQD 954

Query: 955  RKVANLFYIRLKQKFKIDCI-----TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
                NL YI LK K KI             + SA +L +++ K LI ++   QN +Q ++
Sbjct: 955  LTPLNLLYIPLKGKNKIKPQSIILNKKVINQKSAADLGKEAWKRLISLMNYYQNPQQGYL 1014

Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWR 1034
            S+   S+    + +YDHLARV EW 
Sbjct: 1015 SYALPSQN-RYEGDYDHLARVLEWS 1038


>gi|319403514|emb|CBI77093.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 1040

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1047 (35%), Positives = 557/1047 (53%), Gaps = 24/1047 (2%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
             + P +F+I+P +PF    + ALL+GTL++NF  +      LA   IYVPT+RA + LR+
Sbjct: 2    TRTPRIFSISPGTPFLPHFVDALLSGTLIDNFASNGDIQTALADTLIYVPTRRAARALRT 61

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSNIQRLLELARLILIWR 120
             F E +  KS+ LP I  LGD+ E+ F         L   PP+   +RLL LARLI +WR
Sbjct: 62   AFFEKSHTKSSFLPTICPLGDINEKSFLFVENNENTLLNTPPIGESERLLLLARLIRLWR 121

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ ++    + +P + A+AIWLA++LA ++D IETE   W  L  +  +    W
Sbjct: 122  ENLPTHLRSMFGTEDVFIPATTADAIWLAQDLAHLMDEIETESVDWSRLKEIVPDMVAEW 181

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSI 239
            W +  DFL I ++ W + L E    +P  ++    +  A+ L        II AG   SI
Sbjct: 182  WQITLDFLTIVTQSWPQILKERQQCNPAEWRNQAFKMHADILYRTQPHKTIIAAGVASSI 241

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS----SNTTYSTHPQYS 295
            P  A L+  +A  P GA++LPGLD  +    WNT+   +   T+     +    +HPQY 
Sbjct: 242  PTIANLLKVIACLPKGAVILPGLDLQMDEIQWNTLGAFNKEKTTFNPSDHIAAFSHPQYH 301

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
            L KLL  +  +R  V+ +G  S     R+ ++S++  P  T+D+    I  N   NI   
Sbjct: 302  LKKLLSLMKCQRIHVREIGQQSAIKIQRAALLSEALRPASTTDLW-AQITRNDYENI--- 357

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
             +D +LIEA NEREEA++I++ALR ++++ KK +AL+T DRNLARRV  EL RFGI  + 
Sbjct: 358  CADWSLIEAPNEREEALAISLALRNAIEDPKKTAALVTNDRNLARRVAAELQRFGIEAND 417

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            S  +PL+ TL +++L  LL  IFK  D +A  +L+KHPL    +   YL       EL+ 
Sbjct: 418  SGEMPLAQTLPATLLRLLLENIFKPGDPVAFLSLLKHPLTTLEYNHNYLREMAENFELLV 477

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            LRGN    ++ +        + T     H          +  E A  L   +++ + PLV
Sbjct: 478  LRGNACRINLCECDQFFKTWMQTH---FHKVSKNYMPDLQKIEEAKFLCHLLVKAVDPLV 534

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
            T    +       SI++    TV   +N   D    L +L+  E GK L++   +++   
Sbjct: 535  TLIKQERE----CSINEAAIATVEVFENFGRDADNSLAHLYQNEAGKALATFLRELVSDQ 590

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
            S +K +  EW  + + L+   +V P     S LFI GTLESRL   +T+++G LNEG WP
Sbjct: 591  SGLKFHLYEWPALFSALMATRSVSPSPGGHSRLFIWGTLESRLQTVNTVVIGSLNEGSWP 650

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
              T  + FLSR M+  L L+  E+ IG +AHDF+ A G   +I +R+ R N+ P++ SRW
Sbjct: 651  IKTHNDAFLSRPMKMTLTLEPPEQRIGFSAHDFQWAMGMDQVIMSRATRVNHTPSVPSRW 710

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            LQRL  + G   +  +  RG+ +L W + LD T      +RP P PPL+ +PR +S +EI
Sbjct: 711  LQRLETVIGKQVWKQICTRGELFLHWAKMLDNTKSIIPAERPCPVPPLDMRPRHFSVTEI 770

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            + L +DPYA+YA++IL+L  +     DP   +RGTL+H I+     +  N+N+  +  ++
Sbjct: 771  ETLRHDPYAIYAKKILRLKPLKPLIHDPCSAERGTLYHAILAAFCTQIKNQNSTNMLEIL 830

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
              I    F+K NLPP  +IIW   F  ++   ++ E+ + S      V I     I   G
Sbjct: 831  LTIGRKEFDKLNLPPDTEIIWWLNFENLAPFLIQWEQSLGSRERYAEV-IAQNTLIGETG 889

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            + L+G ADR+D+L    ++I D+KT   P       L  PQL+LE A L  G+F      
Sbjct: 890  VTLSGRADRLDILPDKTIEIIDFKTSTPPSSTQVINLFSPQLALETALLMQGAFVDFKGL 949

Query: 956  KVANLFYIRLKQKFKIDCI----TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +NL YI LK K  I  I       K + +A  L +K+ K LI ++   QN +Q ++SH
Sbjct: 950  TPSNLLYISLKGKGTIKPIAIINKKTKDQENAISLGKKAWKYLISLINYYQNPQQGYLSH 1009

Query: 1012 LRLSEKSNIQSEYDHLARVAEWREEYD 1038
                +KS  + +YDHLAR+ EW   +D
Sbjct: 1010 AVPLKKS-YEGDYDHLARLLEWSIGFD 1035


>gi|49473711|ref|YP_031753.1| hypothetical protein BQ00260 [Bartonella quintana str. Toulouse]
 gi|49239214|emb|CAF25533.1| hypothetical protein BQ00260 [Bartonella quintana str. Toulouse]
          Length = 1039

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1043 (36%), Positives = 565/1043 (54%), Gaps = 25/1043 (2%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            KP +F+I+P + F    + +LL+G L++NF  D      LA   IYVPT+RA + LR+ F
Sbjct: 4    KPRIFSISPGTSFLPHFVDSLLSGALLDNFAPDGDIQTALADTLIYVPTRRAARALRTAF 63

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
             E +  KST LP I+ LGDV E+ F         LNPP+  I+RLL LARLI  WR  LP
Sbjct: 64   AERSDTKSTFLPAIRPLGDVDEDSFLFVENHPNTLNPPLGEIERLLLLARLIRPWRENLP 123

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184
              ++ ++    + +P   A+AIWLA++LA ++D IETE   W  L  +  +    WW + 
Sbjct: 124  AHLRTMFGTEDVLIPTHTADAIWLAQDLAHLMDEIETEAANWSKLKDIAPDMVAEWWQIT 183

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPATA 243
             DFL I ++ W + L E   S+P  ++  +++  AE L     + PI+ AG +GSIPA +
Sbjct: 184  LDFLTIVTQNWPQILKERQRSNPAEWRNQILKMHAETLYRTQPEKPILAAGVSGSIPAVS 243

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT-----EKSTNITSSNTTYSTHPQYSLAK 298
             L+  VA+ P GA+VLPGLD H+    WN +      +K+ +          HPQY L K
Sbjct: 244  DLLKVVASLPKGAVVLPGLDLHMDEDQWNALGTTHEEKKTFDSFDHAANVFGHPQYHLKK 303

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
            LL  +  +R  V+ +G  S     R+ ++S++F P  T+D     + +    + +   +D
Sbjct: 304  LLSLMKCQRIHVREIGQQSTIKAKRAALLSEAFRPASTTDRWIQIVRD----DYENLCAD 359

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
             + IEA NEREEA++I++ALR ++++ +K +ALIT DRNLARRV  EL RFGI  + S G
Sbjct: 360  WSFIEAINEREEALAISVALRNAIEDPQKTAALITNDRNLARRVAAELKRFGIEANDSGG 419

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
            IPL+ TL S++L  LL  +F+  D +A  +L+KHPL K       L       EL  LR 
Sbjct: 420  IPLAQTLPSTLLRLLLENVFQP-DPIAFLSLLKHPLTKLEQNRPRLREMAENFELFVLRK 478

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
            +    ++ +    +   I   K  +H     S L ++  E A LL   + + + PL +  
Sbjct: 479  STGRINLCECDQFLEKWI---KTYSHDTFENSTLDQQKCEEARLLCYLLKKAVEPLASLI 535

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
            T +       +I++    TV   +N   DE+  L NL+  E G+ LS+   +++   S +
Sbjct: 536  TQRKE----CTINEVAIATVEVFENFGRDENNSLVNLYQHEAGQALSTFLCELVSDQSGL 591

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
            K    EW  + + LI   +V P       LFI GTLESRL   DT+++GGLNEG WP   
Sbjct: 592  KFQLREWPAMFSALIATRSVTPSPGGHPRLFIWGTLESRLQTVDTVVIGGLNEGSWPITA 651

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
              + FLSR M+  L L+  E+ IG +AHDF+ A G   ++ +R+LR N++P++ SRWLQR
Sbjct: 652  RNDAFLSRQMKMMLTLEPPERRIGLSAHDFQWAMGMNKVVMSRALRVNHVPSLPSRWLQR 711

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            L  + G   +  ++ RG+  L W + +D T       RP P PPL+ +PR +S +EI  L
Sbjct: 712  LETVIGKQVWKQIRTRGEILLHWAKMIDNTNMTACATRPCPIPPLKMRPRHFSVTEIPTL 771

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
              DPYA+YA++IL+L  +     DPD  +RGTL+H I+     +  N NT     ++  I
Sbjct: 772  RYDPYAIYAKKILRLKPLKALIHDPDAAERGTLYHAILAAFCTQVKNPNTANALDVLLNI 831

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                F+K NLP  I+ IW + F   +   ++ E+ ++       V +  K+ I + G+ L
Sbjct: 832  GRKEFDKLNLPADIEAIWWNSFENFAPFLIQWEQSLEPRKRYAEV-VSQKIPIGTTGVTL 890

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
            +G ADRID+L    V+I D+KT   P  +  + L+ PQL+LE A    G+F+        
Sbjct: 891  SGRADRIDVLPGKMVEIFDFKTSTPPSSKQVRDLLFPQLALETALFMQGAFTDFQDLTPT 950

Query: 959  NLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
            NLFYI L  K +I           K   SA  L EK+ K+LI ++   QN +Q ++SH  
Sbjct: 951  NLFYIALNGKGEIAPQSILLKKGKKDIQSAINLGEKAWKHLIALIEYYQNPQQGYLSHAV 1010

Query: 1014 LSEKSNIQSEYDHLARVAEWREE 1036
              +K   + +YDHLAR+ EW   
Sbjct: 1011 PLKK-EYEGDYDHLARLWEWSSS 1032


>gi|319406428|emb|CBI80068.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 1043

 Score =  682 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1047 (34%), Positives = 556/1047 (53%), Gaps = 24/1047 (2%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            ++ P +F+I+  +PF    + ALL+GTL++NF  +      LA   IYVPT+RA + LR+
Sbjct: 5    DRTPRIFSISLGTPFLPHFVDALLSGTLIDNFASNGDIQTALADTLIYVPTRRAARALRT 64

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSNIQRLLELARLILIWR 120
             F E +  KS+ LP I  LGD+ E+ F         L   PP+   +RLL LARLI +WR
Sbjct: 65   AFFEKSHTKSSFLPTICPLGDINEKSFLFVENNENTLLNTPPIGESERLLLLARLIRLWR 124

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ ++    + +P   A+AIWLA++LA ++D IETE   W  L  +  +    W
Sbjct: 125  ENLPTHLQSMFGTEDVFIPARTADAIWLAQDLAHLMDEIETESVDWSRLKEIVPDMVAEW 184

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSI 239
            W +  DFL I ++ W + L E    +P  ++    +   + L        II AG   SI
Sbjct: 185  WQITLDFLTIVTQSWPQILKERQQCNPAEWRNQAFKMHTDILYRTQPHKTIIAAGVASSI 244

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS----SNTTYSTHPQYS 295
            P  A L+  +A  P GA++LPGLD  +    WN +   +   T+     +    +HPQY 
Sbjct: 245  PTIANLLKVIACLPKGAVILPGLDLQMDEIQWNALGAFNKEKTTFNPSDHIAAFSHPQYH 304

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
            L KLL  +  +R  V+ +G  S     R++++S++  P  T+D+    I  +   NI   
Sbjct: 305  LKKLLSLMKCQRIHVREIGQQSAIKIQRAVLLSEALRPASTTDLW-AQITRDDYENI--- 360

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
             +D +LIEA NEREEA++I++ALR ++++ KK +AL+T DRNLARRV  EL RFGI  + 
Sbjct: 361  CADWSLIEAPNEREEALAISLALRNTIEDPKKTAALVTNDRNLARRVAAELQRFGIEAND 420

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            S  IPL+ TL +++L  LL  IFK  D +A  +L+KHPL    +   YL       EL+ 
Sbjct: 421  SGEIPLAQTLPATLLRLLLENIFKPGDPVAFLSLLKHPLTTLEYNHNYLREMAENFELLV 480

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            LRGN    ++ +        + T  +     +       +  E A  L   +++ + PLV
Sbjct: 481  LRGNSCRINLCECDQFFKTWMQTHFHKISKSYM---PDLQKIEEAKFLCHLLVRAVEPLV 537

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
            T    +       SI++    TV   +N   D    L +L+  E GK L++   +++   
Sbjct: 538  TLIKQERE----CSINEAAIATVEVFENFGRDADNSLAHLYQNEAGKALATFLRELVSDQ 593

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
            S +K +  EW  + + L+   +V P +     LFI GTLESRL   +T+++G LNEG WP
Sbjct: 594  SGLKFHLYEWPALFSALMATRSVSPSLGGHPRLFIWGTLESRLQTVNTVVIGSLNEGSWP 653

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
              T  + FLSR M+  L L+  E+ IG +AHDF+ A G   +I +R+ R N+ P++ SRW
Sbjct: 654  IKTHNDAFLSRPMKMTLTLEPPEQRIGLSAHDFQWAMGMDQVIMSRATRVNHTPSVPSRW 713

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            LQRL  + G   +  +  RG+ +L W + LD T      +RP P PPL+ +PR +S +EI
Sbjct: 714  LQRLETVIGKQVWKQICTRGELFLHWAKMLDNTKSIIPAERPCPVPPLDMRPRHFSVTEI 773

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            + L +DPYA+YA++IL+L  +     DP   +RGTL+H I+     +  N+N   +  ++
Sbjct: 774  ETLRHDPYAIYAKKILRLKPLKPLIHDPCSAERGTLYHAILAAFCTQIKNQNATNMLEIL 833

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
              I    F+K NLPP I+IIW   F  ++   ++ E+ + S      V I     I   G
Sbjct: 834  LTIGRKEFDKLNLPPDIEIIWWLNFENLAPFLIQWEQSLGSRKRYAEV-IAQNTLIGETG 892

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            + L+G ADR+D+L    V+I D+KT   P       L  PQL+LE A L  G+F      
Sbjct: 893  VTLSGRADRLDILPDKTVEIIDFKTSTPPSSTQVINLFSPQLALETALLMQGAFVDFKGL 952

Query: 956  KVANLFYIRLKQKFKIDCI----TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +NL YI LK K  I  I       K + +A  L +K+ K LI ++   QN +Q ++SH
Sbjct: 953  TPSNLLYISLKGKGTIKPIAIINKKTKDQENAISLGKKAWKYLISLINYYQNPQQGYLSH 1012

Query: 1012 LRLSEKSNIQSEYDHLARVAEWREEYD 1038
                +KS  + +YDHLAR+ EW   +D
Sbjct: 1013 AVPLKKS-YEGDYDHLARLLEWSIGFD 1038


>gi|319898221|ref|YP_004158314.1| hypothetical protein BARCL_0035 [Bartonella clarridgeiae 73]
 gi|319402185|emb|CBI75716.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 1040

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1043 (35%), Positives = 557/1043 (53%), Gaps = 24/1043 (2%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
             +KP VF+I+P +PF    + ALL+GTL++NF  +      LA   IYVPT+RA + LR+
Sbjct: 2    TRKPRVFSISPGTPFLPYFVDALLSGTLIDNFASNGNIQTALADTLIYVPTRRAARALRT 61

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNL--NPPVSNIQRLLELARLILIWR 120
             F E +  +S+ LP I  LGD+ EE+       +  L   PP+  I+RLL LARLI +WR
Sbjct: 62   AFFEKSHTQSSFLPTICPLGDINEERCLFIENNTNTLINTPPIGEIERLLLLARLIRLWR 121

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ ++    + +P + A+AIW A++LA ++D +ETE   W  L  +  +    W
Sbjct: 122  ENLPTHLRSMFDTEDVFIPATTADAIWFAQDLARLMDEVETESVDWSKLKEIVPDMVAEW 181

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSI 239
            W +  DFL I ++ W + L E    +PV +     +  A+ L +     PII AG T SI
Sbjct: 182  WQITLDFLTIVTQSWPQILKERQQCNPVEWLNQTFKMHADILHRTQPNKPIIAAGVTSSI 241

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT----TYSTHPQYS 295
            P  A L+  +A  P GA++ PGLD  +    WN +   +      +        +HPQY 
Sbjct: 242  PTIANLLKVIAYLPKGAVIFPGLDVQMDETQWNALGALNKEKIIFDPSHHTAVFSHPQYH 301

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
            L KLL  +  +R  V+ +G  S     R+ ++S++  P  T+D+    + +    + +  
Sbjct: 302  LKKLLSLMKCQRIHVREIGQQSAIKIRRAALLSEALRPASTTDLWAQIVRD----DYEDI 357

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
             +D +LIEA NEREEA++I+IALR ++++ KK +ALIT DRNLARRV  EL RFGI  + 
Sbjct: 358  CADWSLIEAPNEREEALAISIALRNAIEDPKKNAALITNDRNLARRVAAELQRFGIEAND 417

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            S  IPL+ TL S++L  LL  IFK  D +A  +L+KHPL    +   YL       EL+ 
Sbjct: 418  SGEIPLAQTLPSTLLRLLLENIFKPGDPIAFLSLLKHPLTTLEYNRNYLREMTENFELLV 477

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            LRGN +  ++ +            K + H       L  +  E A  L   +++ + PLV
Sbjct: 478  LRGNASPINLCECDQFFKTW---MKTHFHKISNNCALDLQKTEEAGFLCHLLVKAVEPLV 534

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                         +I++    TV   +N   D    L +L+  E G  L++   +++   
Sbjct: 535  FLIKQDRE----CTINEAAIATVKVFENFGRDADNSLRHLYQNEAGTALATFLRELVSDQ 590

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
            S +K    EW  + + LI   +V P       LFI GTLESRL   +T+++G LNEG WP
Sbjct: 591  SGLKFRLHEWPALFSALIATRSVSPSPGGHPRLFIWGTLESRLQTVNTVVIGSLNEGSWP 650

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
              T  + FLSR M+  LNL+  E  IG +AHDF+ A G   +I +R+ R N+ P++ SRW
Sbjct: 651  IKTHNDAFLSRPMKMTLNLEPPEHRIGLSAHDFQWAMGMDQVIMSRATRINHTPSVPSRW 710

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            LQRL  + G   +  ++ RG+  L W + LD T      +RP P PPL+ +PR +S +EI
Sbjct: 711  LQRLETVVGKQVWKQIRTRGEILLHWAKMLDNTNSIVPAERPCPVPPLDIRPRHFSVTEI 770

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            + L +DPYA+YA++IL+L  +     DP  T+RGTL+H I+     +  N+N  ++  ++
Sbjct: 771  ETLRHDPYAIYAKKILRLKPLKALIHDPCSTERGTLYHAILAAFCTQIKNQNATDMLDIL 830

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
              I    F+K NLPP I+ +W   F   +   ++ E+ + S      V I     I   G
Sbjct: 831  MTIGRKEFDKLNLPPDIEAVWWLNFENFAPFLIQWEQSLGSRERYAEV-IAQHTLIGETG 889

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            + L+G ADRID+L +  ++I D+KT   P       L  PQL+LEAA L  G+F      
Sbjct: 890  VTLSGRADRIDILPNKTIEIIDFKTSIPPSSTQVINLFSPQLALEAALLMQGAFIDFKGL 949

Query: 956  KVANLFYIRLKQKFKIDCI----TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +NL YI LK+K +I  I       K + +   L +K+ K+LI ++   QN +Q ++S+
Sbjct: 950  TPSNLLYIPLKRKGEIKPIAIINKKTKDQQNVISLGKKAWKHLISLMNYYQNPQQGYLSN 1009

Query: 1012 LRLSEKSNIQSEYDHLARVAEWR 1034
                +KS  + +YDHLAR+ EW 
Sbjct: 1010 AIPLKKS-YEGDYDHLARLLEWS 1031


>gi|319404940|emb|CBI78542.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 1040

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1045 (34%), Positives = 553/1045 (52%), Gaps = 24/1045 (2%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            KP VF+I+P +PF    + ALL+GTL++NF  +    + L    IYVPT+RA + LR+ F
Sbjct: 4    KPRVFSISPGTPFLPHFVDALLSGTLIDNFAPNGNIQIALTDTLIYVPTRRAARALRTAF 63

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSNIQRLLELARLILIWRNK 122
             E +  +S+ LP I  LGD+ EE +      +  L    P+   +RLL LARLI +WR  
Sbjct: 64   FEKSHTQSSFLPTICPLGDINEESYFFTENNTNTLVNTSPIGESERLLLLARLIRLWREN 123

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            LP  ++ ++    + +P + A+A+WLA++LA ++D +ETE+  W  L  +  +    WW 
Sbjct: 124  LPTHLRSMFGTEDIFIPATTADAVWLAQDLARLMDEVETEDVDWLRLKEIVPDMVAEWWQ 183

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPA 241
            +  DFL I ++ W + L E    +PV ++    +   + L        II AG T SIP 
Sbjct: 184  ITLDFLTIVTQSWPQILKERQQCNPVEWRNQAFKIHTDILYRTQPHKTIIAAGVTSSIPT 243

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT----TYSTHPQYSLA 297
             A L+  +A  P GA++LPGLD  +    WN +   +   T  +        +HPQY L 
Sbjct: 244  IANLLKVIACLPKGAVILPGLDLQMDETQWNALGALNKEKTIFDPSHHIAAFSHPQYHLK 303

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
            KLL  ++ +R  V+ +G  +     R+ ++S++  P  T+D+    I +    + +   +
Sbjct: 304  KLLSLMECQRIHVREIGQQNTIKTQRAALLSEALRPASTTDLWAKIIRD----DYENICA 359

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            D +LIEA NEREEA++I+IALR ++++ KK +ALIT DRNLARRV  EL RFGI  + S 
Sbjct: 360  DWSLIEAPNEREEALAISIALRNAIEDPKKTAALITNDRNLARRVAAELQRFGIEANDSG 419

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
             IPL+ TL S++L  LL  IFK  D +A  +L+KHPL    +   YL       EL+ LR
Sbjct: 420  EIPLAQTLPSTLLRLLLENIFKPGDPIAFLSLLKHPLTTLEYNRNYLREMAENFELLVLR 479

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            GN    ++ +          T    +H          +  E A  L   +++ + PLV+ 
Sbjct: 480  GNACRINLCECDQFFRTWKQTH---SHEISNNCISDLQKIEEADFLCHLLVKAVEPLVSL 536

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
               +       +I++    TV   +N   D    L +L+  E GK L +   +++   S 
Sbjct: 537  IKQERE----CTINEAAIATVEVFENFGRDVDNSLAHLYQNEAGKALVTFLRELVSDQSG 592

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +K    EW  + + L+   +V P       LFI GTLESRL   +T+++G LNEG WP  
Sbjct: 593  LKFCLHEWPALFSALMATRSVSPSPGGHPRLFIWGTLESRLQTVNTVVIGSLNEGSWPIK 652

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  + FLSR M+  L L+  E+ IG +AHDF+ A G   +I +R+ R N+ P++ SRWLQ
Sbjct: 653  THNDAFLSRPMKITLTLEPPEQRIGLSAHDFQWAMGMDKVIMSRATRVNHTPSVPSRWLQ 712

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G   +  +  RG+  L W + LD T      +RP P PPL+ +PR +S +EI+ 
Sbjct: 713  RLETVVGKQVWKQICTRGELLLHWAKMLDNTNSITPAERPCPVPPLDIRPRHFSITEIET 772

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L +DPYA+YA++IL+L  +     DP   +RGTL+H I+     +  N N  ++  ++  
Sbjct: 773  LRHDPYAIYAKKILRLKPLKALIHDPCSAERGTLYHTILAAFCTQIKNHNATDMLDILLT 832

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
            I    F+K NLPP I+ +W   F   +   ++ E+ +        V I     I   G+ 
Sbjct: 833  IGRKEFDKLNLPPDIEAVWWPNFENFAPFLIQWEKSLGPRKRYAEV-IAQNTLIGETGVT 891

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
            L+G ADR+D+L    V+I D+KT   P       L  PQL+LE A L  G+F        
Sbjct: 892  LSGRADRLDILPDKTVEIIDFKTSIPPSATQVINLFSPQLALETALLMQGAFIDFKGLIP 951

Query: 958  ANLFYIRLKQKFKIDCITNDKKKYSADE----LSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
            +NL YI LK+K +I  IT   KK    E    L +K+ K LI ++   QN +Q ++SH  
Sbjct: 952  SNLLYIPLKRKGEIKPITVINKKTKDQENAISLGKKAWKYLISLINYYQNPQQGYLSHAV 1011

Query: 1014 LSEKSNIQSEYDHLARVAEWREEYD 1038
              +KS  + +YDHLAR+ EW   +D
Sbjct: 1012 PLKKS-YEGDYDHLARLLEWSIGFD 1035


>gi|222084228|ref|YP_002542754.1| double-strand break repair protein AddB [Agrobacterium radiobacter
            K84]
 gi|221721676|gb|ACM24832.1| double-strand break repair protein AddB [Agrobacterium radiobacter
            K84]
          Length = 1063

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/1050 (44%), Positives = 648/1050 (61%), Gaps = 18/1050 (1%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            +  + TI    PF + +  AL +G L E+FR+DP +PL LA VTI++PT+RA + LRSEF
Sbjct: 6    RKRILTIPAGLPFLKTLASALCDGRLTEHFRHDPSDPLSLAKVTIFLPTRRAARVLRSEF 65

Query: 65   IEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
            +++ G +S ILP+I+ LG+  ++   F   L  + +L  P++N  RLLELARLIL WRNK
Sbjct: 66   VDLLGGRSAILPVIRPLGETDDDSGYFEEALPATADLAQPLANTARLLELARLILAWRNK 125

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            LP I++D++ +SPL  P SPA+AIWLA+NLA++ID IETE++ W  L  L  E + +WW 
Sbjct: 126  LPQIVRDIHSDSPLVAPASPADAIWLARNLAELIDSIETEDRDWAALGDLSTEDHALWWQ 185

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPA 241
            L A+FL+IAS +W  RL EL  SSP  ++ A++RAEA+ +      GPIIIAGSTGS+PA
Sbjct: 186  LTAEFLQIASAFWPARLEELGKSSPARHRNAILRAEAQRIAIMQHAGPIIIAGSTGSVPA 245

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            TA L++ VA+ P G IVLPGLD  +P   W  +  ++      + T  +H QY L+ LL 
Sbjct: 246  TAELIAAVASLPQGVIVLPGLDLSMPEEDWQLVAPETGIGERVDPTTRSHSQYGLSLLLK 305

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L   R +V+ +   + +M  R+ V+S++  P   +              I   F+DVAL
Sbjct: 306  RLHTPRSEVETVAEATEDMQMRAEVLSRALAPAKATSGWGAWQQTLAPDAISNAFADVAL 365

Query: 362  IEADNEREEAISIAIALRMSLDENKKK-----SALITADRNLARRVKLELTRFGINIDIS 416
            IEA NEREEA +IAIALR++L++  +      +ALIT DRNLARRV  EL RFGI  D S
Sbjct: 366  IEAANEREEATAIAIALRLALEKPGQDGGESQAALITPDRNLARRVTAELARFGITADDS 425

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
            AG PL+ T   ++L  LL A  +  D +AI +L+KHPLA+FG P+  L    +ALE++AL
Sbjct: 426  AGTPLTATPQGALLQLLLEATLRPGDPVAIVSLLKHPLARFGLPQDALQLGVDALEILAL 485

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
            RG     DI  L+ L+  ++A Q  N H P W+  L+ E  + A  L   +     PL +
Sbjct: 486  RGGIADVDIGALEPLLDRQLAEQAKNRHTPQWRKSLAPEAVDRARELARQVSGACEPLAS 545

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
              +   S+ G  ++S+W + T   L+ V +DE   L  LW  E G TL+SL  +II+T  
Sbjct: 546  ALSQ-QSSDGLPTLSEWAERTGRALEAVAIDERGSLAALWSGEAGDTLASLLKEIIDTDG 604

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             ++A+  +WIDI+  L  G+ VKP+      LFI GTLE+RL + DTLILGGLNEG WP 
Sbjct: 605  QLEADGPQWIDIMAALCAGQAVKPRALSHPRLFIFGTLEARLQSVDTLILGGLNEGSWPG 664

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
             TA NPF+SR M++++ L+  E+ IGQ AHDFEMANGTR LIY+R+LR+ + PT+ASRWL
Sbjct: 665  QTANNPFISRTMKTEIGLEPPERRIGQLAHDFEMANGTRDLIYSRALRQGSTPTVASRWL 724

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
            QRL+ LGG  F   LK RG  Y  W   +D    Q   +RP P PP E QP++YSFSE+ 
Sbjct: 725  QRLIALGGKAFTSELKARGDQYRHWAGMIDQGENQAPAQRPAPRPPAELQPKSYSFSEVG 784

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
            +L  DPYA+YARR+L+LD I  F +DP   +RGTL+H II   I++     TP+ +  M 
Sbjct: 785  RLRRDPYAIYARRVLRLDPIDPFNRDPGPAERGTLYHKIIDRFIREGHIAGTPDASLAMD 844

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
             I+   F+ E LP HID +WR  F +++ +F+  E + +  I K    +PA + IE IGI
Sbjct: 845  HILTELFDAEQLPVHIDSVWRPRFREVARAFIIWEAERRPEIRKTATEVPAGVQIEPIGI 904

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             LTG ADRID       DI DYKTG NP    A+ L+DPQL+LEA ALKAG+F  ID   
Sbjct: 905  RLTGVADRIDFKGGKAADIIDYKTGYNPSPAQARTLLDPQLALEAYALKAGAFRDIDALV 964

Query: 957  VANLFYIRLKQKFKID---------CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
              NL Y+RL+   +                 +  SA +L+++S+  L++ V+LLQ+GE+ 
Sbjct: 965  PENLLYVRLRPGDRFKVDQVNNELSSRGGKTETKSALDLAQESMDQLVKFVSLLQSGEKG 1024

Query: 1008 FISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            F S L  +++     +YDHLARV+EW    
Sbjct: 1025 FSSRLIPAQQFEYGGDYDHLARVSEWSTAE 1054


>gi|153008154|ref|YP_001369369.1| double-strand break repair protein AddB [Ochrobactrum anthropi ATCC
            49188]
 gi|151560042|gb|ABS13540.1| Double-strand break repair protein AddB [Ochrobactrum anthropi ATCC
            49188]
          Length = 1052

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1050 (36%), Positives = 582/1050 (55%), Gaps = 25/1050 (2%)

Query: 1    MHNKKPN-----VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKR 55
            M  ++P      +F+I P +PF      ALL G LVE F  +P +PL LA+ TIYVPT+R
Sbjct: 1    MSARRPRDGKQRLFSIPPGTPFLPAFAKALLEGRLVEGFPGNPSDPLALANATIYVPTRR 60

Query: 56   AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELA 113
            A + LRS  ++    KS ILP IK LGDV E+    +   S   ++NPP+   +RLL LA
Sbjct: 61   AARALRSILVDRNSTKSAILPTIKPLGDVDEDAAFFNAGSSGVFDINPPIGTAERLLLLA 120

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
            RLI  WR  LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW +L  + 
Sbjct: 121  RLIRPWRESLPSHVRALFGVDDVSVPATTADAIWLARDLAGLMDQVETDGAKWSELAGIA 180

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIII 232
             E    WW +   FL I +  W + L E   S+P  ++  L+ +E + L      GP+I+
Sbjct: 181  PEDLADWWQVTLGFLNIVTNLWPDILAERRLSNPAAHRNDLIWSEVKRLRAHPPAGPVIV 240

Query: 233  AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
            AGSTGSIPATA L+S +A+ PNGA+VLPGLD  +  A W  +        + N +   HP
Sbjct: 241  AGSTGSIPATAELISAIADLPNGAVVLPGLDRDLDDAAWQML-----ASATDNPSTFGHP 295

Query: 293  QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IP 350
            Q+ L KLLD +   R DV+ L ++      R  V+S++  P +T+D       +      
Sbjct: 296  QFGLRKLLDAMQTLRADVEHLDDMPASKRLRERVVSEALRPAETTDAWGQLARDPDMQPT 355

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
             +++    + LIE  NEREEA+++A+ LR ++++  K +AL+TADRNLARRV  EL RFG
Sbjct: 356  ALRQAAQTIDLIETANEREEALTVALVLRDAINDEGKTAALVTADRNLARRVVGELARFG 415

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            I+ D S G  L     +++L  L+  +F   D +A+  LVKHPL +   P      A   
Sbjct: 416  IDADDSGGRHLRDVETTTLLRLLVETVFNPGDPVALLALVKHPLLRLEAPRIERRLAAET 475

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
            LEL+A RG      ++DL +    R+         P W   ++ +    A  L + +   
Sbjct: 476  LELIAFRGGTGRASVLDLPAFFDRRLEESAGQPWQPAWHDTVTPDMIAAARNLCESLSNA 535

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            + PLV +      T     I +  + TV  L+N+  +E   +   +  E G+ L++    
Sbjct: 536  MAPLVPFVIAGRRTE----IGEIARATVEALENLARNEKASIAPFYSGERGEQLATFLRG 591

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            ++ + + +   A EW  ++  L+ GETVKP       LFI G LE+RL   DT+++GGLN
Sbjct: 592  LVSSEAGLDFEASEWPAVLDALMAGETVKPHPGGHPRLFIWGALEARLQTMDTVVIGGLN 651

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
            EG WP  T  +PF+SR M+S + L   E+  G AAHDF+MA G  H++ TRS R +N PT
Sbjct: 652  EGSWPARTRNDPFMSRPMKSMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPT 711

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
            + SRWLQRL  + G D    ++KRG  ++ W+R++D     P  KRP+P PP+ A+P+ +
Sbjct: 712  VPSRWLQRLETVLGADVTAEMRKRGVRFIQWSREIDQAPDVPFVKRPQPAPPVLARPKHF 771

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S +EI+ L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    ++ I+   P+
Sbjct: 772  SVTEIETLRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQEAIDPLAPD 831

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK-M 889
                + ++    F   +LP  I+ +W   F  +   FL  E +   +++  F  I +   
Sbjct: 832  AAERLMELGRVLFADMDLPTEIEAVWWPRFTALIPQFLAWERERAYNVQTRFAEISSDKR 891

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
             +E +GI L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F
Sbjct: 892  EVEGLGITLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLVRGAF 951

Query: 950  SQIDCRKVANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004
             ++   + ++L Y+RLK   ++       I     + +A  L E+S + L +++   Q  
Sbjct: 952  RELGSVRASDLTYVRLKAGGEVKPESILKIGRPPSEKTAPALGEESWQRLAQLLVEYQKP 1011

Query: 1005 EQPFISHLRLSEKSNIQSEYDHLARVAEWR 1034
            E+ ++S      ++++  +YDHLARV EW 
Sbjct: 1012 EKGYLSRALPFRETDLTGDYDHLARVLEWS 1041


>gi|325291477|ref|YP_004277341.1| double-strand break repair protein AddB [Agrobacterium sp. H13-3]
 gi|325059330|gb|ADY63021.1| double-strand break repair protein AddB [Agrobacterium sp. H13-3]
          Length = 1061

 Score =  655 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/1051 (42%), Positives = 637/1051 (60%), Gaps = 25/1051 (2%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             V TIA  +PF + +   L +GTL   ++YDP +PL LA VTIYVPT+R+ + LRSEF++
Sbjct: 9    RVLTIAAGTPFLKTLAETLCDGTLTAGYKYDPADPLSLAKVTIYVPTRRSARVLRSEFVD 68

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLS--YNLNPPVSNIQRLLELARLILIWRNKLP 124
            + G +S ILP+I+ LG+  ++    ++      +L PP+S   R +ELARLIL WRN LP
Sbjct: 69   LLGGRSAILPLIRPLGETDDDSGFFEIENPEIMDLAPPISGTGRQIELARLILAWRNSLP 128

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184
            D I+ ++ +SPL  P SPA+AIWLA+ L ++ID ++TEEK+WE L  L    +  WW L 
Sbjct: 129  DAIRAIHSDSPLVAPASPADAIWLARALGEVIDAMDTEEKEWEALAHLDTGDHAQWWQLT 188

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATA 243
            ADFLKIAS +W  RL ELN +S   ++  ++RAEA  L      GPI++AGSTGSIPA A
Sbjct: 189  ADFLKIASVFWPARLAELNRTSAGRHRNGILRAEANRLANLPDTGPIVVAGSTGSIPAAA 248

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             L+++VA+ P G +VLPGLD  +P   W  I E       ++ +  TH QY L  LL  L
Sbjct: 249  DLIASVASLPQGVVVLPGLDLTMPEEQWEAIAE-----DPTDPSSRTHSQYGLYMLLQKL 303

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
            DI R+DV ++G + +++  R+ V S +  P  ++   N    + +       F+   LIE
Sbjct: 304  DIMRDDVVQIGVIDSDLEKRAAVFSAALAPAKSTSDWNRWREDKQPGFFDDAFAAATLIE 363

Query: 364  ADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI 419
            A NEREEA +IA+ALR++L+        ++ALIT DR LARRV  EL RFGI  D SAG 
Sbjct: 364  AANEREEATAIAVALRLALEAPGAGRPSQAALITPDRGLARRVATELQRFGIEADDSAGT 423

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            PLS T  + +    L AI +  D + + +L+KHPL++FG   +  ++A  ALEL+ALRG 
Sbjct: 424  PLSATPQAGLTQLALEAILRPGDPVPVISLLKHPLSRFGLSLEAFTKASKALELIALRGG 483

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK- 538
            +   +I +L++++  ++A Q+++ H P W+  L E   + A  L   I     PL +   
Sbjct: 484  RVETEIGNLEAVLDAQLAAQRDDRHPPAWRLALPEGSVDAARDLARRIAVSTEPLGSAFV 543

Query: 539  ---TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                +  S    L +SDW + T   ++ +C D++  L  LW  E G  LS LF +++E+G
Sbjct: 544  RRDRSGRSFTDKLPLSDWAERTGRVIEAICADDNNDLATLWSGEAGDKLSGLFGELMESG 603

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              + A+  +W DI   L+ GE++KP+  +   +FI G LE+RL + DT+++GGLNEG+WP
Sbjct: 604  EILDADGPQWADIFAALVAGESIKPRSMRHPRIFIFGALEARLQSVDTVVIGGLNEGLWP 663

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
              TA NPFLSR M++ + L+  E+ IGQ AHDFEMANGTR + Y+R+LR+ + P +ASRW
Sbjct: 664  GQTANNPFLSRNMKTAIGLEPPERRIGQLAHDFEMANGTRQIFYSRALRQGSTPAVASRW 723

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            LQRLL LGG DF D LKKRG+ Y  W   +D +  Q   KRP P PP + QP++YSFSE+
Sbjct: 724  LQRLLALGGEDFADQLKKRGETYRHWAALMDASIDQEAAKRPAPKPPADLQPKSYSFSEV 783

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
             +L  DPY++YARRILKL+ +  F +DP+  DRGTL+H II    ++     TP     M
Sbjct: 784  GRLRRDPYSIYARRILKLNPLDGFNRDPNAADRGTLYHAIIERYSREGHIPGTPASLEAM 843

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
            ++I+D  F+ E+LP H+D+IWR  F  ++ +F++ E++   SI + F    A   I   G
Sbjct: 844  QRILDESFDAEDLPAHVDVIWRPRFEAVARAFIDWEKERHPSIRRSFFEARAGQEIPEAG 903

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            I LTG ADRID+   G  DI DYKTG  P    A+ L+DPQL+LEAAAL  G+F +   +
Sbjct: 904  IRLTGIADRIDIKTGGQADIIDYKTGLAPSVNQARALLDPQLALEAAALMRGAFREAGSQ 963

Query: 956  KVANLFYIRLKQK---------FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
               NL Y+RL+            +       K   SA EL+ +S+  L + V  L++GE 
Sbjct: 964  TPENLIYVRLRPGTRFFADQVNNEHSNRGGKKAPKSAIELATESIDQLAKFVRSLRDGEN 1023

Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             F S L   E+ +   EYDHLARV+EW    
Sbjct: 1024 GFASRLVPEEQQSYGGEYDHLARVSEWSTAE 1054


>gi|15887383|ref|NP_353064.1| hypothetical protein Atu0024 [Agrobacterium tumefaciens str. C58]
 gi|15154886|gb|AAK85849.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 1061

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/1051 (43%), Positives = 633/1051 (60%), Gaps = 25/1051 (2%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             V TIA  +PF + +   L +G L   +RYDP +PL LASVTIYVPT+R+ + LRSEF++
Sbjct: 9    RVLTIAAGTPFLKTLAETLCDGRLTAGYRYDPTDPLSLASVTIYVPTRRSARVLRSEFVD 68

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLS--YNLNPPVSNIQRLLELARLILIWRNKLP 124
            + G +S ILP+I+ LG+  ++    D+      +L PP+S   R +ELARLIL WRN LP
Sbjct: 69   LLGGRSAILPLIRPLGETDDDSGFFDIENPEIMDLAPPISGTGRQIELARLILAWRNSLP 128

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184
            D I+ ++ +SPL  P SPA+AIWLA+ L ++ID ++TEEK WE L  L   ++  WW L 
Sbjct: 129  DAIRAIHSDSPLVAPASPADAIWLARALGEVIDAMDTEEKDWEALQHLDTGEHAQWWQLT 188

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATA 243
            ADFLKIAS +W  RL ELN SS   ++ A++RAEA+ L      GPII+AGSTGSIPA A
Sbjct: 189  ADFLKIASVFWPARLAELNRSSAGRHRNAILRAEADRLANLPDTGPIIVAGSTGSIPAAA 248

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             L++ VA  P G +VLPGLD  +P   W  I E       ++ +  THPQY L  LL  L
Sbjct: 249  DLIAAVAALPQGTVVLPGLDLAMPEEQWQAIIE-----DPTDPSSRTHPQYGLYMLLQKL 303

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
             + R++V ++G +  ++  R+ V S +  P  ++   N            + F+   LIE
Sbjct: 304  GMSRDEVVQIGALDRDLEKRAAVFSAALAPAKSTSDWNGWREGRDPGFFDEAFAAATLIE 363

Query: 364  ADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI 419
            A N+REEA +IA+ALR++L+        ++ALIT DR LARRV  EL RFGI  D SAG 
Sbjct: 364  AANQREEATAIAVALRLALEAPGPGRPSQAALITPDRGLARRVATELQRFGIEADDSAGT 423

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            PLS T  + +    L AI +  D + I +L+KHPLA+FG      ++A  ALEL+ALRG 
Sbjct: 424  PLSATPQAGLTQLALEAILRPGDPVPIISLLKHPLARFGLSGDAFTKASKALELIALRGG 483

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK- 538
            +   +I +L+ ++  ++  Q++N H P W+  L E   + A  L   I     PL +   
Sbjct: 484  RVETEIGNLEVVLDAQLLAQRDNRHPPAWRVALPEGSVDAARDLARRIAIATEPLGSAFI 543

Query: 539  ---TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                +  +    L +SDW   T   ++ +C D+   L  LW  E G  LSSLF++++E+G
Sbjct: 544  RRDRSGRAFTDKLPLSDWAGRTGRVIEAICADDSNDLAALWSGEAGDKLSSLFAELMESG 603

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              + A+  +WIDI   L+ GE++KP+  +   +FI G LE+RL + DT+++GGLNEG+WP
Sbjct: 604  DILDADGPQWIDIFAALVAGESIKPRSMRHPRIFIFGALEARLQSVDTVVIGGLNEGLWP 663

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
              TA NPFLSR M++ + L+  E+ IGQ AHDFEMANGTR + YTR+LR+ + P +ASRW
Sbjct: 664  GQTANNPFLSRSMKTAIGLEPPERRIGQLAHDFEMANGTRQIFYTRALRQGSTPAVASRW 723

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            LQRLL LGG +F + L+KRG+ Y  W   +D +  Q   KRP P PP + QP++YSFSE+
Sbjct: 724  LQRLLALGGENFAEQLRKRGETYRHWAGLMDESIDQETAKRPAPKPPADLQPKSYSFSEV 783

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
             +L  DPYA+YARRILKLD +  F +DP+  DRGTL+H II    ++     TP     M
Sbjct: 784  GRLRRDPYAIYARRILKLDPLDPFNRDPNAADRGTLYHGIIERYSREGHIPGTPASLEAM 843

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
            ++I+D  F+ ENLP H+D+IWR  F  ++ +F++ E++   SI + F    A   I   G
Sbjct: 844  QRILDDCFDAENLPVHVDVIWRPRFAAVARAFIDWEKERHPSIRRSFFEARAGQEIAEAG 903

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            I LTG ADRID+  SG  DI DYKTG  P    A+ L+DPQL+LEAAAL  G+F +    
Sbjct: 904  IRLTGVADRIDIKTSGQADIIDYKTGLAPSVNQARALLDPQLALEAAALMRGAFRETGSP 963

Query: 956  KVANLFYIRLKQKFKIDCIT---------NDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
               NL Y+RL+   +                +   SA EL+ +S+  L + V  L++GE 
Sbjct: 964  TPENLIYVRLRPGDRFFADQVNNEHSNRSGKRPPKSAIELATESIDQLAKFVRSLRDGEN 1023

Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             F S L   E+ +   EYDHLARV+EW    
Sbjct: 1024 GFASRLVPEEQQSYGGEYDHLARVSEWSTAE 1054


>gi|209551531|ref|YP_002283448.1| double-strand break repair protein AddB [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209537287|gb|ACI57222.1| double-strand break repair protein AddB [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1064

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/1051 (43%), Positives = 638/1051 (60%), Gaps = 18/1051 (1%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            +P + TI     F + +   L +G L   FR++  +PL L+ VTIY+PT+RA++ LRSEF
Sbjct: 6    QPRILTIPAGLSFLKTLATTLCDGRLTPLFRHEADDPLSLSRVTIYLPTRRAVRVLRSEF 65

Query: 65   IEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
            +++ G +S ILP+I+ LG+  ++   F   L  + +L  P+SN  RLLELARLIL WRNK
Sbjct: 66   VDLLGGRSAILPVIRPLGETDDDSGYFDEALPATIDLAQPLSNTARLLELARLILAWRNK 125

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            LP+I++ ++ +SPL  P SPA+AIWLA+NLA++ID IETE+  W +L  L    Y  WW 
Sbjct: 126  LPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWSELSKLDTGDYAAWWQ 185

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIPA 241
            L A+FL+IAS +W ERL EL  SSP  ++ A++RAEA  L      GPIIIAGSTGS+PA
Sbjct: 186  LTAEFLQIASAFWPERLSELGKSSPARHRNAILRAEASRLSATKPTGPIIIAGSTGSVPA 245

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            TA L++ VAN P G IVLPGLD  +P   W  +  + +    +N    +HPQY L+ LL 
Sbjct: 246  TADLIAAVANLPEGVIVLPGLDLAMPERHWQMVAPELSPGQHANPASRSHPQYGLSSLLK 305

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L + R DV  L     ++  R+ ++S++ +P + +        E         F+DV+L
Sbjct: 306  RLKLTRADVTLLDRPEADLDRRAEILSRALVPAEATSDWGAWKSELPEGAFSSAFADVSL 365

Query: 362  IEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGINIDISA 417
            IEA NEREEA +IAIALR++L+   +     +ALIT DRNLARRV  EL+RFGI  D SA
Sbjct: 366  IEAANEREEATAIAIALRLALERPGQDGESRAALITPDRNLARRVMAELSRFGILADDSA 425

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G PL+ T   ++L  LL A  +  D +AI +L+KHPLA+FG     L      LEL+ALR
Sbjct: 426  GTPLAATPQGTLLQLLLEAALRPGDPVAIVSLLKHPLARFGLDRAALISTTETLELLALR 485

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-- 535
            G     DI  L+ L+  ++A Q  + H P W+  L+ +  E A  L   + Q   PL   
Sbjct: 486  GGVAEVDISRLEPLLTHQLAEQAGDRHAPQWRKALAPDAAEAAYDLARRVTQATEPLASA 545

Query: 536  --TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
               ++        + ++S+W + T   L+ V  D H  L +LW  E G  L++L  ++I+
Sbjct: 546  LMRHRPEVRGRTASFTLSEWAERTGRSLEAVAADPHGNLADLWSGEAGDALAALLGEVID 605

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
            T   ++A+  +WIDI+  L  G  +KP+      LFI GTLE+RL + DT+ILGGLNEG 
Sbjct: 606  TNGQMEADGPQWIDIMAALAAGHALKPRALSHPRLFIFGTLEARLQSVDTMILGGLNEGT 665

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
            WP  TA NPF+ R+M++++ L+  E+ IGQ AHDFEMANGTRHLIY+R+LR+ + PT+AS
Sbjct: 666  WPGQTANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGSTPTVAS 725

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
            RWLQRLL L G  F   LK RG  +L W   +D    Q   +RP P PPL  QP +YSFS
Sbjct: 726  RWLQRLLALAGETFEAELKGRGNRFLQWAGLIDRGEAQAPAQRPSPKPPLTLQPTSYSFS 785

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            E+ +L  DPYA+YARRIL+LD +  F +DP   +RGTL+H II   I++     TP+   
Sbjct: 786  EVGRLRRDPYAIYARRILRLDPVDAFNRDPGAAERGTLYHTIIDRFIREAHVAGTPDAAA 845

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
             M++I+   F+ E LPPHID +WR  F  ++ +FL+ E   +  I K    +   + +E+
Sbjct: 846  AMERILSELFDMEQLPPHIDAVWRPRFRAVAGAFLDWEAGRRPGIRKTLTEVRGGVELEA 905

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            I I L G ADRID+      DI DYKTG NP    A+ L+DPQL+LEAAAL+ G+F  + 
Sbjct: 906  INIRLNGVADRIDVTGPHAADIIDYKTGYNPSPAQARVLLDPQLALEAAALRDGAFRDVG 965

Query: 954  CRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                 +L Y+RL+   +        +      K  SA +L+E+S+  L++ V+LLQ+GE+
Sbjct: 966  SLIPQDLLYVRLRPGRRFQVDTVNNESSARSDKAKSAMDLAEESIDQLVKFVSLLQSGEK 1025

Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             F S L  +++ +   +YDHLARV+EW    
Sbjct: 1026 GFTSRLIPAQQFDFGGDYDHLARVSEWSTAE 1056


>gi|150398435|ref|YP_001328902.1| double-strand break repair protein AddB [Sinorhizobium medicae
            WSM419]
 gi|150029950|gb|ABR62067.1| Double-strand break repair protein AddB [Sinorhizobium medicae
            WSM419]
          Length = 1059

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/1048 (43%), Positives = 644/1048 (61%), Gaps = 16/1048 (1%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            PNVFTI    PF R +   L +G L   FRYDP  PL LA VTI+VPT+R+ + LRSEF+
Sbjct: 5    PNVFTIPAGLPFLRTLAEKLCDGKLTAGFRYDPTEPLALAGVTIFVPTRRSARVLRSEFV 64

Query: 66   EITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123
            ++ G +S ILP+I++LG+  ++   F   L    +L PP+S   RL+EL RLIL WRN+L
Sbjct: 65   DLLGGRSAILPVIRALGETDDDSGFFDTQLPAILDLAPPLSGTARLIELGRLILAWRNRL 124

Query: 124  PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183
            P ++ D++ ESPL  P SPA+AIWLA+NLA++ID IETEE  W+ L  L   ++ +WW L
Sbjct: 125  PQVVLDIHAESPLIAPASPADAIWLARNLAELIDAIETEELDWDALDGLDGGEHALWWQL 184

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTGSIPAT 242
               FLKIA  YW ERL EL  SSP  ++ A+++AE + +  G   GPIIIAGSTGSIPAT
Sbjct: 185  TLAFLKIARTYWPERLAELKHSSPARHRNAVLKAETQRIAAGKVTGPIIIAGSTGSIPAT 244

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI--TEKSTNITSSNTTYSTHPQYSLAKLL 300
            A L++ V   P+G IVLPGLD  +  A W  I          S N    THPQY   +LL
Sbjct: 245  AALIAAVKALPHGTIVLPGLDGTMSNAEWQLIAGEADGAGAFSRNPASRTHPQYGFHRLL 304

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
              + I+R+DV  L +  +++  RS V+S++ LP D +++     L  +   +   F+ VA
Sbjct: 305  RRMGIERDDVPALASAPDDLDCRSAVLSRALLPADATNVWMQARLSFEPGRLFSAFAGVA 364

Query: 361  LIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            LIEA NEREEA +IAIALR++L+ + + ++ALIT DR+LARRV  EL RFGI  D SAGI
Sbjct: 365  LIEAANEREEATAIAIALRLALEGDEESQAALITPDRDLARRVGAELARFGIEADDSAGI 424

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            PLS T   ++   +L A  + +D +A+  L+KHPLA+FG   K   RA + LELVALRG 
Sbjct: 425  PLSATAAGTLARLMLEATLRPDDPVALVALLKHPLARFGGSAKDARRAADVLELVALRGG 484

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
             +  DI  L+ ++   +A  +   H P W++ +  +D  LA  L   I   + PL +  +
Sbjct: 485  TDVVDISALEPVLDKALAKHQAERHPPPWRNGIGLDDIALARALARRIATAVEPLASTLS 544

Query: 540  NKNSTCGNLS----ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                   + S    +SDW + T   L+ V +DE   L +LW  E G+TLS+L   I+ET 
Sbjct: 545  ADAEIGRHRSTVLSLSDWAERTGRALEAVAVDERGSLGDLWASEAGETLSTLLRGIMETD 604

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              ++++  +W DI+  L   E VKP+  +   +FI G LESRL + D ++LGG+NEG WP
Sbjct: 605  GQMESDGAQWCDILEALAASEAVKPRSMRHPRVFIFGALESRLQSVDLVVLGGMNEGTWP 664

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
            + T+ +PFLSR M++ + L+  E+ IGQ AHDF+MA GTR LI++RS+R+ + PT+ASRW
Sbjct: 665  RQTSNDPFLSRTMKAGIGLEPPERRIGQLAHDFQMACGTRKLIFSRSMRQGSAPTVASRW 724

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            LQRL  LGG      L+  G  YL W R LDY  +QP  +RP+P PP E QPR YSFSEI
Sbjct: 725  LQRLQALGGERLTKQLRANGANYLHWMRILDYGERQPLSERPEPKPPAELQPRKYSFSEI 784

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
             +L  DPYAVYARRIL+L+ I  F +DP   +RG L+H I+   +K   +  + E    M
Sbjct: 785  TRLRRDPYAVYARRILRLEPIDPFNRDPGAAERGQLYHRIVERFVKGGFDPASREGEEAM 844

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
             ++ D  F++E LP HID IWR  F  +  +FL  E + +  + + F  +PA M + +  
Sbjct: 845  IRLTDEAFDEEKLPAHIDTIWRPRFQAVGRAFLGWERERRRGVSRSFTEVPAAMDLGTAD 904

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            I LTG ADR+D L  G +DI DYKTG +P  + A+ L+DPQL+LEAAAL+AG+F  +   
Sbjct: 905  IRLTGIADRLDRLTDGTIDIIDYKTGSSPSPKEARALLDPQLALEAAALRAGAFHTVGAA 964

Query: 956  KVANLFYIRLKQKFKI------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
            +  +L Y+RLK   +       +     K+  S ++L++++L  L +++  L +G   F 
Sbjct: 965  RPHSLRYVRLKPGARFAVDTVNNEGARSKETKSTEQLADEALAELRKLLAALVSGRHGFA 1024

Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            S L + ++ +   EYDHLARVAEW    
Sbjct: 1025 SRLIVQKQRDYGGEYDHLARVAEWATAD 1052


>gi|222147061|ref|YP_002548018.1| double-strand break repair protein AddB [Agrobacterium vitis S4]
 gi|221734051|gb|ACM35014.1| double-strand break repair protein AddB [Agrobacterium vitis S4]
          Length = 1062

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/1055 (43%), Positives = 639/1055 (60%), Gaps = 21/1055 (1%)

Query: 1    MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
            M + +  +FTI P  PF R +   L +G L   FRYDP +PL L+ VTI VPT+RA++ L
Sbjct: 2    MSSLQARIFTIPPDRPFLRLIAETLCDGRLAPGFRYDPADPLSLSKVTILVPTRRAVRVL 61

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADL--LLSYNLNPPVSNIQRLLELARLILI 118
            R++F+E+ G +S ILP+IK LG+  ++    D        LNPP+SN  RLLELA+LIL 
Sbjct: 62   RAQFVEVLGGQSAILPMIKPLGEAEDDASYFDADTPALLALNPPISNTVRLLELAQLILA 121

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
            WRNKLPDI+  ++ E+PL  P SPA+A+WLA+ L ++ID +ETEE+ W DL  L    + 
Sbjct: 122  WRNKLPDIVLSIHTETPLVAPASPADAVWLARALVELIDSVETEERDWADLDKLDARDFA 181

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTG 237
             WW L   FL IAS YW  RL ELN SSPV ++ AL+R E + +       P+I+AGSTG
Sbjct: 182  SWWQLTLAFLGIASAYWPARLEELNRSSPVLHRNALLRTERDRVGHLSDPHPVIVAGSTG 241

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            SIPA + L++ VA  P G IVLPGLD  +P   W+++  +         T  THPQY L 
Sbjct: 242  SIPAASELIAAVARLPQGVIVLPGLDKAMPDDQWHSVGGEQPPGMPPEPTARTHPQYGLH 301

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
            +LL  L + R+DV  L     ++  RS ++S++  P   +D              Q  F+
Sbjct: 302  RLLGRLGLTRDDVGVLEEAEPDLADRSEILSRALSPAKATDQWTAWRQAFGDNRFQAAFA 361

Query: 358  DVALIEADNEREEAISIAIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGIN 412
            DVALIEA NEREEAI+IAIALR++L+         ++ALIT DRNLARRV  EL RFGI 
Sbjct: 362  DVALIEAANEREEAIAIAIALRLALERPGADGGESRAALITPDRNLARRVASELARFGIE 421

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
             D SAG P S T   ++L  +L A+ +  D +AI +L+KHPLA+FG P+     A +ALE
Sbjct: 422  ADDSAGTPFSATPQGTLLVLVLEAVLRPGDPVAIVSLLKHPLARFGLPDDGHREATDALE 481

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
             +ALRG   + DI  L  L  +++  Q ++ H P W+   +++ ++ A +L + I + + 
Sbjct: 482  AIALRGGTGAIDIAALAPLFDEQVVAQFDDRHPPAWRRSFTDQTRQQARILAEAIAEAVE 541

Query: 533  PLVTY---KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
            PL  +   K + +     LS+ +W + T   L+ V   +   L  LW  E G  L+ L S
Sbjct: 542  PLAGHVVAKPDGHHFTTRLSLREWAERTGQVLEAVARTDEGDLGPLWANEAGAVLARLLS 601

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            +I+ET   + A+  +WI+I+  L   E+VKPK  +   +FI G LESRL + DT+ILGGL
Sbjct: 602  EIMETDGQLSADGPQWIEIVAALTASESVKPKSLRHPRVFIFGALESRLQSVDTMILGGL 661

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
            NEG WP  T  NPFLSR M++++ L+  E+ IGQ AHDFEMANGTRHLIY R+LR+ + P
Sbjct: 662  NEGSWPGTTTNNPFLSRSMKTEMGLEPPERQIGQLAHDFEMANGTRHLIYCRALRQGSAP 721

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
            T+ASRWLQRLL LGG DF + LK RG+ Y  +   LD    Q   +RP+P PP +  P+T
Sbjct: 722  TVASRWLQRLLALGGKDFAETLKARGERYRHFADLLDKGADQAAAQRPQPKPPADLHPKT 781

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
            YSFSE+ +L  DPY++YARRILKLD +  F  DP  ++RGTL+H I+ + + +   K  P
Sbjct: 782  YSFSEVGRLRRDPYSIYARRILKLDPVEPFNSDPGASERGTLYHAIVEQFVARMPEKLGP 841

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
            +   LM +I D+ F +ENLPPHI ++WR  F ++  +F+E + +   +  K+     A +
Sbjct: 842  DTEQLMSEIADTLFAEENLPPHIHVVWRKRFSEVGLAFIEWQRQRDPA--KLVTEARAGV 899

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
             +  I I LTG ADRID+   G  DI DYKTG NP    A+ L+DPQL+LEAAAL  G+F
Sbjct: 900  ELGEIDIRLTGIADRIDIRA-GHADIIDYKTGLNPSVSQARSLLDPQLALEAAALTMGAF 958

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCIT-------NDKKKYSADELSEKSLKNLIEIVTLLQ 1002
              +      NL Y+RL+   +               K  SA +L+ +S+  L   VTLLQ
Sbjct: 959  KDVGRLNPDNLIYVRLRPGGRFKADQVNNELTGKGDKAKSALDLAHESIAQLTRFVTLLQ 1018

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            +GE+ ++S L  +  ++   +YDHLARVAEW    
Sbjct: 1019 SGERGYVSRLMPAMMNDFSGDYDHLARVAEWSTAE 1053


>gi|15963788|ref|NP_384141.1| hypothetical protein SMc02759 [Sinorhizobium meliloti 1021]
 gi|15072963|emb|CAC41422.1| Hypothetical protein SMc02759 [Sinorhizobium meliloti 1021]
          Length = 1059

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/1048 (43%), Positives = 639/1048 (60%), Gaps = 16/1048 (1%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            PNVFTI    PF R +   L NG L   FRYDP  PL LA VTI+VPT+R+ + LRSEF+
Sbjct: 5    PNVFTIPAGLPFLRTVAERLCNGELTPGFRYDPAQPLALAGVTIFVPTRRSARVLRSEFV 64

Query: 66   EITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123
            ++ G +S ILP+I++LG+  ++   F A++    +L PP+S   RL+EL RLIL WRN+L
Sbjct: 65   DLLGGRSAILPMIRALGETDDDSGFFDAEVPAILDLAPPLSGTARLIELGRLILAWRNRL 124

Query: 124  PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183
            P ++ D++ ESPL  P SPA+AIWLA+NLA++ID IETEE  W+ L  L   ++ +WW L
Sbjct: 125  PQVVLDIHAESPLIAPASPADAIWLARNLAELIDAIETEELDWDALDGLDGGEHALWWQL 184

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTGSIPAT 242
               FLKIA  YW ERL EL  SSP  ++ A+++AE + +  G   GPIIIAGSTGSIPAT
Sbjct: 185  TLAFLKIARTYWPERLAELKHSSPARHRNAVLKAETQRIAAGKVSGPIIIAGSTGSIPAT 244

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI--TEKSTNITSSNTTYSTHPQYSLAKLL 300
            A L++ V   PNG IVLPGLD  +  A W  I      +  ++ N    THPQY   +LL
Sbjct: 245  AALIAAVKTLPNGTIVLPGLDGSMSDAEWRLIAGETSGSGTSARNPASRTHPQYGFHRLL 304

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
              + I+  DV  L + ++++  RS V+S++ LP D +D+            +   F+DVA
Sbjct: 305  KRMGIELGDVPALASAADDLDYRSAVLSRALLPADATDVWMEARRSFDAERLLSAFADVA 364

Query: 361  LIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            LIEA NEREEA +IAIALR++L+ + + ++ALIT DR LARRV  EL RFGI  D SAGI
Sbjct: 365  LIEAANEREEATAIAIALRLALEADEESQAALITPDRGLARRVGTELARFGIEADDSAGI 424

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            PLS T   ++   LL A  + +D +A+  L+KHPLA+FG       RA + LEL ALRG 
Sbjct: 425  PLSATPAGALARLLLEATLRPDDPVALVALLKHPLARFGRTADDARRAADVLELAALRGG 484

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
             ++ D+  L++++   +  QK + H P W++ +  +D  +A  L   I   + PL +  +
Sbjct: 485  TDAADVSALEAVLDKALDRQKTDRHPPPWRAGIGPDDIAMARALARRIASAVGPLSSNLS 544

Query: 540  NKNSTCGNL----SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                T  +      +SDW + T   L+   +DE   L  LW  E G+ L++L   IIET 
Sbjct: 545  ADPQTGRHRSTVLPLSDWAERTGRALEAAAIDEQGNLGALWASEAGEILATLLRGIIETD 604

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              ++A+  +W DI+  L   E VKP+  +   +FI G LESRL + D ++LGG+NEG WP
Sbjct: 605  GQMEADGPQWCDILEALAASEAVKPRSMRHPRVFIFGALESRLQSVDLVVLGGMNEGTWP 664

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
              T+ +PFLSR M++ + L+  E+ IGQ AHDF+MA GTR LI +RS+R+ + PT+ASRW
Sbjct: 665  GQTSNDPFLSRTMKAGIGLEPPERRIGQLAHDFQMACGTRRLILSRSMRQGSAPTVASRW 724

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            LQRL  LGG      LK  G  YL W R LD   +QP  +RP+P PP E QPR YSFSE+
Sbjct: 725  LQRLQALGGERLTALLKANGADYLHWMRILDQGERQPLSERPEPKPPAELQPRKYSFSEV 784

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
             +L  DPYAVYARRIL+L+ I  F +DP   +RG L+H I+   +K   +    E    M
Sbjct: 785  TRLRRDPYAVYARRILRLEPIQPFNRDPGAAERGLLYHRIVDRFVKGGFDPAAREGEEAM 844

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
             ++ D  F++E LP HID IWR  F  +  +FLE E + +  I K F  +PA M +    
Sbjct: 845  IRLTDEAFDEEKLPAHIDTIWRPRFQAVGRAFLEWERERRHGIVKSFTEVPAAMDLGIGD 904

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            I LTG ADR+D L  G +DI DYKTG +P  + A+ L+DPQL+LEAAAL+AG+F  I   
Sbjct: 905  IRLTGIADRLDRLADGTIDIIDYKTGSSPSPKEARALLDPQLALEAAALRAGAFRVIGPA 964

Query: 956  KVANLFYIRLKQKFKI------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
            +  +L Y+RLK   +       +     K+  S  +L+++SL  L ++++ L +G   F 
Sbjct: 965  QPHSLRYVRLKPGSRFAVDTVNNEGAGSKETKSTGQLADESLAELRKLLSALMSGRFGFA 1024

Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            S L + ++ +   EYDHLARVAEW    
Sbjct: 1025 SRLIVQKQRDYGGEYDHLARVAEWATAD 1052


>gi|307310976|ref|ZP_07590621.1| double-strand break repair protein AddB [Sinorhizobium meliloti
            BL225C]
 gi|307322013|ref|ZP_07601392.1| double-strand break repair protein AddB [Sinorhizobium meliloti AK83]
 gi|306892351|gb|EFN23158.1| double-strand break repair protein AddB [Sinorhizobium meliloti AK83]
 gi|306899656|gb|EFN30283.1| double-strand break repair protein AddB [Sinorhizobium meliloti
            BL225C]
          Length = 1059

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/1048 (43%), Positives = 639/1048 (60%), Gaps = 16/1048 (1%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            PNVFTI    PF R +   L NG L   FRYDP  PL LA VTI+VPT+R+ + LRSEF+
Sbjct: 5    PNVFTIPAGLPFLRTVAERLCNGELTPGFRYDPAQPLALAGVTIFVPTRRSARVLRSEFV 64

Query: 66   EITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123
            ++ G +S ILP+I++LG+  ++   F A++    +L PP+S   RL+EL RLIL WRN+L
Sbjct: 65   DLLGGRSAILPMIRALGETDDDSGFFDAEVPAILDLAPPLSGTARLIELGRLILAWRNRL 124

Query: 124  PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183
            P ++ D++ ESPL  P SPA+AIWLA+NLA++ID IETEE  W+ L  L   ++ +WW L
Sbjct: 125  PQVVLDIHAESPLIAPASPADAIWLARNLAELIDAIETEELDWDALDGLDGGEHALWWQL 184

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTGSIPAT 242
               FLKIA  YW ERL EL  SSP  ++ A+++AE + +  G   GPIIIAGSTGSIPAT
Sbjct: 185  TLAFLKIARTYWPERLAELKHSSPARHRNAVLKAETQRIAAGKVSGPIIIAGSTGSIPAT 244

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI--TEKSTNITSSNTTYSTHPQYSLAKLL 300
            A L++ V   PNG IVLPGLD  +  A W  I      +  ++ N    THPQY   +LL
Sbjct: 245  AALIAAVKTLPNGTIVLPGLDGSMSDAEWRLIAGETSGSGTSARNPASRTHPQYGFHRLL 304

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
              + I+  DV  L + ++++  RS V+S++ LP D +D+            +   F+DVA
Sbjct: 305  KRMGIELGDVPALASAADDLDYRSAVLSRALLPADATDVWMEARRSFDAERLLSAFADVA 364

Query: 361  LIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            LIEA NEREEA +IAIALR++L+ + + ++ALIT DR LARRV  EL RFGI  D SAGI
Sbjct: 365  LIEAANEREEATAIAIALRLALEADEESQAALITPDRGLARRVGTELARFGIEADDSAGI 424

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            PLS T   ++   LL A  + +D +A+  L+KHPLA+FG       RA + LEL ALRG 
Sbjct: 425  PLSATPAGALARLLLEATLRPDDPVALVALLKHPLARFGRTADDARRAADVLELAALRGG 484

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
             ++ D+  L++++   +  QK + H P W++ +  +D  +A  L   I   + PL +  +
Sbjct: 485  TDAADVSALEAVLDKALDRQKTDRHPPPWRAGIGPDDIAMARALARRIASAVGPLSSNLS 544

Query: 540  NKNSTCGNL----SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                T  +      +SDW + T   L+   +DE   L  LW  E G+ L++L   IIET 
Sbjct: 545  ADPQTGRHRSTVLPLSDWAERTGRALEAAAIDEQGNLGALWASEAGEILATLLRGIIETD 604

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              ++A+  +W DI+  L   E VKP+  +   +FI G LESRL + D ++LGG+NEG WP
Sbjct: 605  GQMEADGPQWCDILEALAASEAVKPRSMRHPRVFIFGALESRLQSVDLVVLGGMNEGTWP 664

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
              T+ +PFLSR M++ + L+  E+ IGQ AHDF+MA GTR LI +RS+R+ + PT+ASRW
Sbjct: 665  GQTSNDPFLSRTMKAGIGLEPPERRIGQLAHDFQMACGTRRLILSRSMRQGSAPTVASRW 724

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            LQRL  LGG      LK  G  YL W R LD   +QP  +RP+P PP E QPR YSFSE+
Sbjct: 725  LQRLQALGGERLTALLKANGADYLHWMRILDQGERQPLSERPEPKPPAELQPRKYSFSEV 784

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
             +L  DPYAVYARRIL+L+ I  F +DP   +RG L+H I+   +K   +    E    M
Sbjct: 785  TRLRRDPYAVYARRILRLEPIQPFNRDPGAAERGLLYHRIVDRFVKGGFDPAAREGEEAM 844

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
             ++ D  F++E LP HID IWR  F  +  +FLE E + +  I K F  +PA M +    
Sbjct: 845  IRLTDEAFDEEKLPAHIDTIWRPRFQAVGRAFLEWERERRHGIVKSFTEVPAAMDLGIGD 904

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            I LTG ADR+D L  G +DI DYKTG +P  + A+ L+DPQL+LEAAAL+AG+F  I   
Sbjct: 905  IRLTGIADRLDRLADGTIDIIDYKTGSSPSPKEARALLDPQLALEAAALRAGAFRVIGPA 964

Query: 956  KVANLFYIRLKQKFKI------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
            +  +L Y+RLK   +       +     K+  S  +L+++SL  L ++++ L +G   F 
Sbjct: 965  QPHSLRYVRLKPGSRFAVDTVNNEGARSKETKSTGQLADESLAELRKLLSALMSGRFGFA 1024

Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            S L + ++ +   EYDHLARVAEW    
Sbjct: 1025 SRLIVQKQRDYGGEYDHLARVAEWATAD 1052


>gi|254470632|ref|ZP_05084035.1| double-strand break repair protein AddB [Pseudovibrio sp. JE062]
 gi|211959774|gb|EEA94971.1| double-strand break repair protein AddB [Pseudovibrio sp. JE062]
          Length = 1040

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1045 (33%), Positives = 535/1045 (51%), Gaps = 21/1045 (2%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63
              PN+F+++PS+PF +  + ALL+G L+  F+ D  +PL LA VTIYVPT+RA + L   
Sbjct: 3    ATPNIFSVSPSTPFLQATVEALLSGQLIPGFQAD-DDPLALADVTIYVPTRRAARTLPDV 61

Query: 64   FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-LNPPVSNIQRLLELARLILIWRNK 122
              +  G K+ +LP I  LGDV EE+           L P +S ++R L + RL+  W+ +
Sbjct: 62   LRKALGAKAALLPKILPLGDVDEEEHILKGHGDGEALPPAMSTMERKLAMTRLVWAWKGQ 121

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            L   I  L  + P  +P S A+A WLA NL  ++D ++TEE  W +L +L  E +  +W 
Sbjct: 122  LRRQILQLKEDDPARVPASSADAAWLAGNLLTLMDEVQTEEASWAELGSLVPEDHAEYWK 181

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPA 241
            +  +FLKI +  W E L  +    P   + AL+RAEA  L     +GP+I+AG+TGS PA
Sbjct: 182  ITLEFLKIVTDLWPEHLKAIGMMDPKERRSALIRAEAARLRTTPPRGPVIVAGATGSFPA 241

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            TA LM  V +  NGA+VLP LD  +    W  +        S       HPQYSL +LL 
Sbjct: 242  TAELMKAVLSLENGALVLPALDRGMDAESWEALG-----SPSEPQRVPGHPQYSLRQLLL 296

Query: 302  FLDIKREDVKRLGNV-SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
             L +KREDV +LG   S  +  R  +++++  P +T++            + +  F+   
Sbjct: 297  ALGVKREDVTQLGAPESEALRLRCEIVNEALRPAETTEEWQNFFTSELAEHRETAFAGTQ 356

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            LI A NE EEA+SIA+ LR +++   K +ALI+ DR LARRV  ELTR+GI +D +AG P
Sbjct: 357  LITARNEAEEALSIALLLREAVE-AGKTTALISPDRTLARRVASELTRWGIIVDDTAGRP 415

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L  T    +         +  D + +  L+KHPLA  G   K +  A  ALE   LRG  
Sbjct: 416  LEQTPPMVLAILTAKLALQGLDPVNLLALLKHPLAFLGMKAKEVRSAARALERGVLRGPH 475

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS-EEDKELAVLLVDHILQCITPLVTYKT 539
                +  L+  V             P  + R   EED +    L+D + Q + PL     
Sbjct: 476  PRPGLSGLREAVEAAHDQAMEKADRPVARWRKLVEEDWDAINTLLDRLEQALGPLEALLQ 535

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET-GSCI 598
            N N       + D  K  V  +  +  DE+     L+  E GK L+   + ++E   + +
Sbjct: 536  NPNEI----PVEDIIKTHVDAVLLLGADENGSTEELFSGENGKALAETLTSLLEADAAGL 591

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
               A EW  +   LI G  V+ +      + +LG +E+RL  +D ++LGGLNEG WP+ T
Sbjct: 592  CVPANEWPGVFGALITGGAVRSRTPADPRIHLLGPMEARLQRYDLVVLGGLNEGTWPQRT 651

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
              +P+L+R M+  + L   E+ IG +AHDF    G   ++ +RS R +  PT+ASRWLQR
Sbjct: 652  RNDPWLNRPMKGQIGLDPPERKIGTSAHDFLWNLGAPEVVLSRSERVDGSPTVASRWLQR 711

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            ++ L G      ++ +G+ Y +    LD +       KRP+P PP+EA+P   S + I+ 
Sbjct: 712  IVTLAGQSVEQQMRAKGKRYTEMAHVLDRSETPVRPAKRPEPKPPVEARPVQLSVTAIEN 771

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            LI DPY +YAR +LKLD +     +P   D+G + H+ +   ++        +    +  
Sbjct: 772  LIRDPYLIYARHVLKLDEVDPIGGEPGAADKGNIIHDALANFLEDWDGPFDEKAVRALLT 831

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--ESIG 895
                 F   +  P I  +W   F +I+  F+ +E ++   I   F+    K+ +      
Sbjct: 832  EGGRLFRPLDAFPAIRALWWPRFERIAEEFVAYEGEVAPKIYDRFLEEYGKVEMPRPERN 891

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID-C 954
              LTG ADRID +K   + + DYKTG  P  +  + L+ PQL LE A ++   F  +   
Sbjct: 892  FTLTGRADRIDQMKDNTLRVVDYKTGQPPSAKQVEALLSPQLPLEVAMIRRKGFEDLPHD 951

Query: 955  RKVANLFYIRLKQKFKIDCIT-NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
              ++++ YI+LK       +     K+ +A+ELSE++ K L ++V   +N  + ++S  R
Sbjct: 952  MPISDMLYIQLKGGSDAVKLESRVPKESTAEELSEEAWKRLEQLVAAYENPRKGYLSRAR 1011

Query: 1014 LSEKSNIQSEYDHLARVAEWREEYD 1038
            + ++    + YDHLARV EW    D
Sbjct: 1012 VLKEREWAASYDHLARVQEWSLGED 1036


>gi|306843519|ref|ZP_07476120.1| double-strand break repair protein AddB [Brucella sp. BO1]
 gi|306276210|gb|EFM57910.1| double-strand break repair protein AddB [Brucella sp. BO1]
          Length = 1052

 Score =  635 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 381/1044 (36%), Positives = 587/1044 (56%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LRS
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRS 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGIFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + LVE   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILVERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDRDLDDAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV+ L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVEVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGARFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKGGGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|116249793|ref|YP_765631.1| hypothetical protein RL0027 [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254441|emb|CAK05515.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
            3841]
          Length = 1063

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 458/1053 (43%), Positives = 635/1053 (60%), Gaps = 18/1053 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
             ++P + TI    PF + +   L +G L   FR++  +PL LA VTIY+PT+RA++ LRS
Sbjct: 4    RQQPRILTIPAGLPFLKMLATTLCDGRLTPLFRHEADDPLSLAKVTIYLPTRRAVRVLRS 63

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTAD--LLLSYNLNPPVSNIQRLLELARLILIWR 120
            EF+++ G +S ILP+I+ LG+  ++    D  L  + +L  P+SN  RLLELARLIL WR
Sbjct: 64   EFVDLLGGRSAILPVIRPLGETDDDSGYFDEVLPATIDLAQPLSNTARLLELARLILAWR 123

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
            NKLP+I++ ++ +SPL  P SPA+AIWLA+NLA++ID IETE+  W +L  L    Y  W
Sbjct: 124  NKLPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWSELSKLDTGDYAAW 183

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSI 239
            W L A+FL+IAS +W +RL EL  SSP  ++ A++RAEA  L      GPIIIAGSTGS+
Sbjct: 184  WQLTAEFLQIASAFWPQRLSELGKSSPARHRNAILRAEASRLSATKPAGPIIIAGSTGSV 243

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L++ VA+ P G IVLPGLD  +P   W  +  +      +N    +HPQY L+ L
Sbjct: 244  PATADLIAAVAHLPEGVIVLPGLDLSMPERHWQMVAPEPAPGQHANPASRSHPQYGLSVL 303

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            L  L + R DV  L     ++  R+ ++S++  P + +        +     +   FSD+
Sbjct: 304  LKRLKLTRADVTLLDRPEADLERRAEILSRALAPAEATSDWGAWKNDLPAGALTSAFSDI 363

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGINIDI 415
            +LIEA NEREEA +IAIALR++L+   +     +ALIT DRNLARRV  EL+RFGI  D 
Sbjct: 364  SLIEAANEREEATAIAIALRLALERPGQDSESRAALITPDRNLARRVMAELSRFGILADD 423

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            SAG PLS     ++L  LL A  +  D +AI +L+KHPLA+FG     L  A  ALEL+A
Sbjct: 424  SAGTPLSAMPQGTLLQLLLEAALRPGDPVAIVSLLKHPLARFGLERGALISATEALELLA 483

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            LRG     DI  L+ L+  ++A Q  + H P W+  LS E  + A  L   + Q   PL 
Sbjct: 484  LRGGVAEVDISTLEPLLAHQLAEQALDRHAPQWRKALSPEAADAAYDLARRVAQATEPLA 543

Query: 536  ----TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
                 ++          ++S+W + T   L+ V +D    L +LW  E G  L++L  ++
Sbjct: 544  SALMRHRPEDRGRTTRFTLSEWAERTGRSLEAVAVDPQGNLADLWSNEAGDALAALLGEV 603

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            I+T   ++A+  +WIDI+  L  G  VKP+      LFI GTLE+RL + DTLILGGLNE
Sbjct: 604  IDTDGQMEADGPQWIDIMAALAAGHAVKPRALSHPRLFIFGTLEARLQSVDTLILGGLNE 663

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
            G WP  TA NPF+ R+M++++ L+  E+ IGQ AHDFEMANGTRHLIY+R+LR+ + PT+
Sbjct: 664  GTWPGQTANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGSTPTV 723

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            ASRWLQRLL LGG  F   LK RG  +L W   +D    Q   +RP P PPL  QP++YS
Sbjct: 724  ASRWLQRLLALGGEAFEAELKGRGNRFLQWAALIDRGEAQAPAQRPSPKPPLALQPKSYS 783

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            FSE+ +L  DPYA+YARRIL+LD +  F +DP   +RGTL+H II   I++     TP+ 
Sbjct: 784  FSEVGRLRRDPYAIYARRILRLDPVDPFNRDPGAAERGTLYHKIIDRFIREAHIAGTPDA 843

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
               M+ ++   F+ E LPPHID +WR  F  ++ +FLE E   +  I K    +   M +
Sbjct: 844  AAAMEHVLSELFDMEKLPPHIDAVWRPRFRAVARAFLEWEAGRRHGILKTLTEVRGGMEL 903

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
            E I I LTG ADRID+      DI DYKTG NP    A+ L+DPQL+LEAAAL AG+F  
Sbjct: 904  EPINIRLTGVADRIDITGPHSADIIDYKTGYNPSPAQARVLLDPQLALEAAALSAGAFRD 963

Query: 952  IDCRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004
                    L Y+RL+   +        +      K  SA +L+ +S+  L++ V LLQ+ 
Sbjct: 964  AGSLVPQELLYVRLRPGSRFQVDTVNNESSARSDKAKSAMDLAAESIDQLVKFVGLLQSS 1023

Query: 1005 EQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            E+ F S L  +++ +   +YDHLARV+EW    
Sbjct: 1024 ERGFTSRLIPAQQFDFGGDYDHLARVSEWSTAE 1056


>gi|254486211|ref|ZP_05099416.1| double-strand break repair protein AddB [Roseobacter sp. GAI101]
 gi|214043080|gb|EEB83718.1| double-strand break repair protein AddB [Roseobacter sp. GAI101]
          Length = 987

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 279/1048 (26%), Positives = 451/1048 (43%), Gaps = 82/1048 (7%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
              K P V+ +AP   F +E++  L++       R     P+ +  + + V T+R  + LR
Sbjct: 4    PTKTPRVYGLAPGIDFPQELVAGLVS-------RLKGQPPVAMGRIDLVVNTRRMQRRLR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              F       +++LP I  + ++        L     L  P   ++R LEL  L+    +
Sbjct: 57   EIF---DAGPASLLPRIHLIDNLD------TLAAGIALPRPSPALRRRLELITLVSKLLD 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            + P++                A+   L+ +LA +ID ++ E    E +  L        W
Sbjct: 108  QAPELAPR-------------ASLYDLSDSLAGLIDEMQGEGVPVEAITDLDVSDQSGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A  FL IA +Y  E +   +       +  + +  A       + PII+AGSTGS   
Sbjct: 155  ERAKQFLDIAHRYLGESVTRPDP--RARQRQIVAQMIAGWAETPPQHPIIVAGSTGSRGT 212

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            +A LM  VA  P GA++LPG D  +PT++W  + E              HPQY     L 
Sbjct: 213  SAMLMQAVAGLPQGAVILPGFDFDMPTSVWADMGEA------QEQLSQDHPQYRFRHFLR 266

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             LD+ R  ++           R+ ++S S  P   + +  T+    K+P++ K    + L
Sbjct: 267  ALDLARSTIEPWTTCEPPSPERNALVSLSLRPAPVTHVWLTE--GPKLPDLGKATQGLTL 324

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            I+A   R EA++IA+ LR ++++  + +ALIT DR L+R+V   L R+ I  D SAG+PL
Sbjct: 325  IQAPTPRAEALAIALRLRQAVED-GQTAALITPDRMLSRQVTSALDRWNIVPDDSAGMPL 383

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  + +   +  D  A+ TL+KHPL   G            LEL   R    
Sbjct: 384  HLSPPGRFLRHVADLFVRKLDSEALLTLLKHPLTHSGGDRNIHQLNTQRLELQVRRDGLP 443

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              D   +  L    ++  K    +  W + +                             
Sbjct: 444  YPDADGVLRLSRKTVSRSKKPDQMDIWATWVGAH-----------------------FAG 480

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP-NLWFEEEGKTLSSLFSKIIE-TGSCIK 599
                 +  + DW    +     +    +  +   LW  + G+    + + + E      +
Sbjct: 481  IDVGQDKPLEDWVADHLAVAAAIADGSNPTIESALWLRKSGEEAKKVMANLSENAPYGGE 540

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +A ++ D++  L+    ++        + I GT+E+R+   D +I+GGLN+  WP+   
Sbjct: 541  MSASDYADLVGALLQQGEIRDSDAPHPDVMIWGTMEARVQGADLIIMGGLNDSTWPEAPP 600

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R M+    L   E+ IG +AHD++ +     +  TR++R +   T+ SRWL RL
Sbjct: 601  PDPWLNRQMRLQAGLLLPERRIGLSAHDYQQSIAAPEVCLTRAIRSDEAETVPSRWLNRL 660

Query: 720  LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              L       GG   +  + KRG  +L+  R L+  ++     RP P PP  A+P   S 
Sbjct: 661  GNLLNGLPEQGGDAAWQTMIKRGDHWLEQARALEAVSRVDPAIRPSPRPPRGARPHALSV 720

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +EIK+LI DPYAVYA+  LKL  +    + PD   RG + H I+   IK           
Sbjct: 721  TEIKRLIRDPYAVYAKHSLKLRALNPLVQSPDAPVRGIIVHEIMERFIKSVTADPKNLTK 780

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI--PAKMA 890
              + +   +  + E   P   I+W     +I+  F+E+E + QS                
Sbjct: 781  SHLLETASTVLDAEAPWPAARIMWLTKIERIADWFIENEVRRQSYSSPAAFEKAAKGSHI 840

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
               +G  LTG+ADRID    G + I DYKTG  P K   QK  D QL LEAA ++ G F 
Sbjct: 841  FPDLGFTLTGYADRIDRTDDGDILIYDYKTGTPPSKLE-QKAFDKQLLLEAAMVEEGGFK 899

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
            +I    VA   YI L  K        +      DE   + L  L  ++T   + +Q F +
Sbjct: 900  EIGVATVAQAAYIGLGSKPVELAAPLE------DEPPHEVLAKLHALITSYLSDDQGFTA 953

Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038
              R+ + ++   +YDHLAR  EW    D
Sbjct: 954  R-RMVKTTDFAGDYDHLARFGEWDATTD 980


>gi|306842787|ref|ZP_07475428.1| double-strand break repair protein AddB [Brucella sp. BO2]
 gi|306287060|gb|EFM58568.1| double-strand break repair protein AddB [Brucella sp. BO2]
          Length = 1052

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 380/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LRS
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRS 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDRDLDDAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGARFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKGGGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|254718139|ref|ZP_05179950.1| hypothetical protein Bru83_01086 [Brucella sp. 83/13]
 gi|265983092|ref|ZP_06095827.1| double-strand break repair protein AddB [Brucella sp. 83/13]
 gi|306837653|ref|ZP_07470522.1| double-strand break repair protein AddB [Brucella sp. NF 2653]
 gi|264661684|gb|EEZ31945.1| double-strand break repair protein AddB [Brucella sp. 83/13]
 gi|306407211|gb|EFM63421.1| double-strand break repair protein AddB [Brucella sp. NF 2653]
          Length = 1052

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 380/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LRS
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRS 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGMDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGARFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLTE 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKGGGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|148559179|ref|YP_001259903.1| double-strand break repair protein AddB [Brucella ovis ATCC 25840]
 gi|148370436|gb|ABQ60415.1| double-strand break repair protein AddB [Brucella ovis ATCC 25840]
          Length = 1052

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEALENMARDETGSVVAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDVIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|327192795|gb|EGE59723.1| hypothetical protein RHECNPAF_192003 [Rhizobium etli CNPAF512]
          Length = 1064

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 461/1051 (43%), Positives = 638/1051 (60%), Gaps = 18/1051 (1%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            +P V TI    PF + +   L +G L   FR+D  +PL LA VTIY+PT+RA++ LRSEF
Sbjct: 6    QPRVLTIPAGLPFLKTLATTLCDGRLTPLFRHDVDDPLSLAGVTIYLPTRRAVRVLRSEF 65

Query: 65   IEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
            +++ G +S ILP+I+ LG+  ++   F   L  + +L  P+SN  RLLELARLIL WRNK
Sbjct: 66   VDLLGGRSAILPVIRPLGETDDDSGYFDEALPATIDLAQPLSNTARLLELARLILAWRNK 125

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            LP+I++ ++ +SPL  P SPA+AIWLA+NLA++ID IETE+  W +L  L    Y  WW 
Sbjct: 126  LPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWSELSKLDTGDYAAWWQ 185

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIPA 241
            L A+FL+IAS +W  RL EL  SSP  ++ A++RAEA  L      GPIIIAGSTGS+PA
Sbjct: 186  LTAEFLQIASAFWPARLTELGKSSPARHRNAILRAEAARLSATKPGGPIIIAGSTGSVPA 245

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            TA L+S VAN   G IVLPGLD  +P   W  +  +      +N    +HPQY L+ LL 
Sbjct: 246  TADLISAVANLREGVIVLPGLDLAMPEGHWQMVAPEPVPGQHTNPASRSHPQYGLSSLLK 305

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L + R DV  L     ++  R+ ++S++  P + +        E     +   F+DV+L
Sbjct: 306  RLRLTRADVSTLDRPEADLDRRAEILSRALAPAEATSDWGIWKSELPGRALTSAFNDVSL 365

Query: 362  IEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGINIDISA 417
            IEA NEREEA +IA+ALR++L+   +     +ALIT DRNLARRV  EL+RFGI  D SA
Sbjct: 366  IEAANEREEATAIAVALRLALERPGQDGESRAALITPDRNLARRVMAELSRFGILADDSA 425

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G PLS T   S+L  LL A  +  D +AI +L+KHPLA+FG     L+ A  ALEL+ALR
Sbjct: 426  GTPLSATPQGSLLQLLLEASLRPGDPVAIVSLLKHPLARFGLERNALTFATEALELLALR 485

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT- 536
            G     DI  L+ L+  ++A Q  + H P W+  L  E  + A  L   + +   PL   
Sbjct: 486  GGVAEVDIGALEPLLTHQLAEQALDRHAPQWRKALPAEAADAAFELAGRVSRATEPLAAA 545

Query: 537  ---YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
               ++        + ++S+W + T   L+ V  D    L +LW  E G  L+SL  ++I+
Sbjct: 546  LVRHRPEDRGKTASFTLSEWAQRTGRALEAVAADPQGNLADLWSNEAGDALASLLGEVID 605

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
            T   ++A+  +WIDI   L  G  VKP+      LFI GTLE+RL + DTLILGGLNEG 
Sbjct: 606  TDGQMEADGPQWIDITAALAAGHAVKPRALSHPRLFIFGTLEARLQSVDTLILGGLNEGS 665

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
            WP  +A NPF+ R+M++++ L+  E+ IGQ AHDFEMANGTRHLIY+R+LR+ + PT+AS
Sbjct: 666  WPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGSTPTVAS 725

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
            RWLQRLL LGG  F   LK RG  +L W   +D    Q   +RP P PPL  QP++YSFS
Sbjct: 726  RWLQRLLALGGEAFEAELKGRGARFLQWAGLVDRGETQAPAQRPSPKPPLALQPQSYSFS 785

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            E+ +L  DPY +YARRIL+LD +  F +DP   +RGTL+H II   I+      TPE   
Sbjct: 786  EVGRLRRDPYTIYARRILRLDPVDAFNRDPGAAERGTLYHKIIDRFIRAAHVAGTPEAAA 845

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
             M+ I+   F+ E LPPHID +WR  F +++ +FLE E   + +I +    +   + +E+
Sbjct: 846  AMELILTELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVRGGVELEA 905

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            I I L G ADRID++     DI DYKTG NP    A+ L+DPQL+LEAAAL+AG+F    
Sbjct: 906  INIRLNGVADRIDMIGPNAADIIDYKTGYNPSPAQARALLDPQLALEAAALRAGAFRDAG 965

Query: 954  CRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                 +L Y+RL+   +        +      K  SA +L+E+S+  L++ V+LLQ+GE+
Sbjct: 966  SLTPQDLLYVRLRPGNRFQVDMVNNENAARSDKAKSAIDLAEESVDQLVKFVSLLQSGEK 1025

Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             F S L  +++ +   +YDHLARV+EW    
Sbjct: 1026 GFTSRLIPAQQFDFGGDYDHLARVSEWSTAE 1056


>gi|260169509|ref|ZP_05756320.1| double-strand break repair protein AddB [Brucella sp. F5/99]
 gi|261759037|ref|ZP_06002746.1| double-strand break repair protein AddB [Brucella sp. F5/99]
 gi|261739021|gb|EEY27017.1| double-strand break repair protein AddB [Brucella sp. F5/99]
          Length = 1052

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 378/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ + S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDANDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEVLENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|86355695|ref|YP_467587.1| hypothetical protein RHE_CH00027 [Rhizobium etli CFN 42]
 gi|86279797|gb|ABC88860.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 1064

 Score =  632 bits (1629), Expect = e-178,   Method: Composition-based stats.
 Identities = 461/1056 (43%), Positives = 639/1056 (60%), Gaps = 19/1056 (1%)

Query: 1    MHNK-KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQE 59
            M ++ +P + TI    PF + +   L +G L   FR++  +PL LA VTIY+PT+RA++ 
Sbjct: 1    MADRHQPRILTIPAGLPFLKTLATTLCDGRLTPLFRHESDDPLSLARVTIYLPTRRAVRV 60

Query: 60   LRSEFIEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLIL 117
            LRSEF+++ G +S ILP+I+ LG+  ++   F   L  + +L  P+SN  RLLELARLIL
Sbjct: 61   LRSEFVDLLGGRSAILPVIRPLGETDDDSGYFEEALPATIDLAQPLSNTARLLELARLIL 120

Query: 118  IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY 177
             WRNKLP+I++ ++ +SPL  P SPA+AIWLA+NLA++ID IETE+  W +L  L    Y
Sbjct: 121  AWRNKLPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWTELSKLDTGDY 180

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGST 236
              WW L A+FL+IAS +W ERL EL  SSP  ++ A++RAEA  +      GPIIIAGST
Sbjct: 181  AAWWQLTAEFLQIASAFWPERLSELGKSSPARHRNAILRAEATRISATKPAGPIIIAGST 240

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
            GS+PAT  L++ VAN P G IVLPGLD  +P   W  +  +      SN    +HPQY L
Sbjct: 241  GSVPATTDLIAAVANLPEGVIVLPGLDLSMPERHWQMVAPEPLPGQHSNPASRSHPQYGL 300

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
            + LL  L + R D+  L     ++  R+ ++S++  P + +              +   F
Sbjct: 301  SSLLKRLRLTRGDISLLDRPEADLNRRAEILSRALAPAEATSDWGAWKGALPEGALDSAF 360

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGIN 412
            +DV+LIEA NEREEA +IAIALR++L+   +     +ALIT DRNLARRV  EL+RFGI 
Sbjct: 361  ADVSLIEAANEREEATAIAIALRLALERPGRDGESRAALITPDRNLARRVMAELSRFGIL 420

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
             D SAG PLS T   ++L  LL A  +  D +AI +L+KHPLA+FG     L  A  ALE
Sbjct: 421  ADDSAGTPLSATPQGTLLQLLLEAALRPGDPVAIVSLLKHPLARFGLERDALISATEALE 480

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
            L+ALRG     DI  L+ L+  ++  Q  + H P W+  L  E    A  L   + +   
Sbjct: 481  LLALRGGVAEVDISALELLLTHQLGEQVLDRHAPQWRKALPAEAANAASELARRVTRATQ 540

Query: 533  PLV----TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
            PL      ++  +       ++S+W + T   L+ V  D H  L +LW  E G  L+SL 
Sbjct: 541  PLASALVRHRPEERGKTARFTLSEWAERTGRSLEAVAADPHGNLADLWSHEAGDALASLL 600

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
             ++I+T   I+A+  +WIDI+  L  G  VKP+      LFI GTLE+RL + DTLILGG
Sbjct: 601  GEVIDTDGQIEADGPQWIDIMAALAAGHAVKPRALNHPRLFIFGTLEARLQSVDTLILGG 660

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
            LNEG WP  +A NPF+ R+M++++ L+  E+ IGQ AHDFEMANGTRHLIY+R+LR+ + 
Sbjct: 661  LNEGSWPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGST 720

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
            PT+ASRWLQRLL LGG  F   L+ RG  YL W   +D    Q   +RP P PPL  QP+
Sbjct: 721  PTVASRWLQRLLALGGEAFEAALRGRGNRYLQWAGLIDRGEAQAPAQRPSPKPPLALQPK 780

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
            +YSFSE+ +L  DPYA+YARRIL+LD +  F +DP   +RGTL+H II   I++     T
Sbjct: 781  SYSFSEVGRLRRDPYAIYARRILRLDPVDAFNRDPGAAERGTLYHTIIDRFIREAHVAGT 840

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
            PE    M+ I+   F+ E LPPHID +WR  F +++ +FLE E   + +I +    +   
Sbjct: 841  PEAAAAMEWILTELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVRGG 900

Query: 889  MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
            + +E+I I L G ADRID+   G  DI DYKTG NP    A+ L+DPQL+LEAAAL AG+
Sbjct: 901  VELEAINIRLNGVADRIDITGPGAADIIDYKTGYNPSPAQARALLDPQLALEAAALSAGA 960

Query: 949  FSQIDCRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
            F         +L Y+RL+   +        +      K  SA +L+  S+  LI+ V+LL
Sbjct: 961  FRDAGSLIPQDLLYVRLRPGRRFQVDTVNNENSARSDKAKSAMDLAGDSVDQLIKFVSLL 1020

Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            Q+GE+ F S L  +++ +   +YDHLARV+EW    
Sbjct: 1021 QSGEKGFTSRLIPAQQFDFGGDYDHLARVSEWSTAE 1056


>gi|190889667|ref|YP_001976209.1| hypothetical protein RHECIAT_CH0000028 [Rhizobium etli CIAT 652]
 gi|190694946|gb|ACE89031.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 1064

 Score =  632 bits (1629), Expect = e-178,   Method: Composition-based stats.
 Identities = 461/1051 (43%), Positives = 638/1051 (60%), Gaps = 18/1051 (1%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            +P + TI+   PF + +   L +G L   FR+D  +PL LA VTIY+PT+RA++ LRSEF
Sbjct: 6    QPRILTISAGLPFLKTLATTLCDGRLTPLFRHDVDDPLSLARVTIYLPTRRAVRVLRSEF 65

Query: 65   IEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
            +++ G +S ILP+I+ LG+  ++   F   L  + +L  P+SN  R LELARLIL WRNK
Sbjct: 66   VDLLGGRSAILPVIRPLGETDDDSGYFDEALPATIDLAQPLSNTARQLELARLILAWRNK 125

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            LP+I++ ++ +SPL  P SPA+AIWLA+NLA++ID IETE+  W +L  L    Y  WW 
Sbjct: 126  LPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWSELSKLDTGDYAAWWQ 185

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIPA 241
            L A+FL+IAS +W  RL EL  SSP  ++ A++RAEA  L      GPIIIAGSTGS+PA
Sbjct: 186  LTAEFLQIASAFWPARLAELGKSSPARHRNAILRAEAARLSATKPGGPIIIAGSTGSVPA 245

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            TA L+S VAN   G IVLPGLD  +P   W  +  +      +N    +HPQY L+ LL 
Sbjct: 246  TADLISAVANLREGVIVLPGLDLAMPEEHWQMVAPEPVPGQHANPASRSHPQYGLSSLLK 305

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L + R DV  L     ++  R+ ++S++  P + +        E     +   F+DV+L
Sbjct: 306  RLRLTRADVSTLDRPDADLDRRAEILSRALAPAEATSDWGIWKSELPGGALTSAFNDVSL 365

Query: 362  IEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGINIDISA 417
            IEA NEREEA +IA+ALR++L+   +     +ALIT DRNLARRV  EL+RFGI  D SA
Sbjct: 366  IEAANEREEATAIAVALRLALERPGQDGESRAALITPDRNLARRVMAELSRFGILADDSA 425

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G PLS T   S+L  LL A  +  D +AI +L+KHPLA+FG     L+ A  ALEL+ALR
Sbjct: 426  GTPLSATPQGSLLQLLLEASLRPGDPVAIVSLLKHPLARFGLERNALTFATEALELLALR 485

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT- 536
            G     DI  L+ L+  ++A Q  + H P W+  L  E  + A  L   + +   PL   
Sbjct: 486  GGVAEVDIGALEPLLTHQLAEQALDRHAPQWRKALPTEAADAAFELAGRVSRATEPLAAA 545

Query: 537  ---YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
               ++        + ++S+W + T   L+ V  D    L +LW  E G  L+SL  ++I+
Sbjct: 546  LVRHRPEDRGKTASFTLSEWAQRTGRALEAVAADPQGNLADLWSNEAGDALASLLGEVID 605

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
            T   ++A+  +WIDI   L  G  VKP+      LFI GTLE+RL + DTLILGGLNEG 
Sbjct: 606  TDGQMEADGPQWIDITAALAAGHAVKPRALSHPRLFIFGTLEARLQSVDTLILGGLNEGS 665

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
            WP  +A NPF+ R+M++++ L+  E+ IGQ AHDFEMANGTRHLIY+R+LR+ + PT+AS
Sbjct: 666  WPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGSTPTVAS 725

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
            RWLQRLL LGG  F   LK RG  +L W   +D    Q   +RP P PPL  QP++YSFS
Sbjct: 726  RWLQRLLALGGEAFEAELKGRGARFLQWAGLVDRGGTQAPAQRPSPKPPLALQPQSYSFS 785

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            E+ +L  DPYA+YARRIL+LD I  F +DP   +RGTL+H II   I+      TPE   
Sbjct: 786  EVGRLRRDPYAIYARRILRLDPIDAFNRDPGAAERGTLYHKIIDRFIRAAHVAGTPEAAA 845

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
             M+ I+   F+ E LPPHID +WR  F +++ +FLE E   + +I +    +   + +E+
Sbjct: 846  AMELILTELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVRGGVELET 905

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            I I L G ADRID+      DI DYKTG NP    A+ L+DPQL+LEAAAL+AG+F    
Sbjct: 906  INIRLNGVADRIDITGPNAADIIDYKTGYNPSPAQARALLDPQLALEAAALRAGAFRDAG 965

Query: 954  CRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                 +L Y+RL+   +        +      K  SA +L+E+S+  L++ V+LLQ+GE+
Sbjct: 966  SLTPQDLLYVRLRPGNRFQVDMVNNENAARSDKAKSAIDLAEESVDQLVKFVSLLQSGEK 1025

Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             F S L  +++ +   +YDHLARV+EW    
Sbjct: 1026 GFTSRLIPAQQFDFGGDYDHLARVSEWSTAE 1056


>gi|163844119|ref|YP_001628523.1| double-strand break repair protein AddB [Brucella suis ATCC 23445]
 gi|163674842|gb|ABY38953.1| double-strand break repair protein AddB [Brucella suis ATCC 23445]
          Length = 1052

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 377/1044 (36%), Positives = 584/1044 (55%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            P TA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PVTAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   + +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGNPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSVAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|254500632|ref|ZP_05112783.1| hypothetical protein SADFL11_668 [Labrenzia alexandrii DFL-11]
 gi|222436703|gb|EEE43382.1| hypothetical protein SADFL11_668 [Labrenzia alexandrii DFL-11]
          Length = 1046

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 344/1050 (32%), Positives = 534/1050 (50%), Gaps = 22/1050 (2%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63
             +P +FTI P+  F    +  L++G LV  FR    +PLLL+S T+Y+PT+RA + L   
Sbjct: 3    DQPRLFTIPPAVSFLETFVDKLVDGQLVPGFRP-LDDPLLLSSATLYLPTRRAARLLPDL 61

Query: 64   FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-LNPPVSNIQRLLELARLILIWRNK 122
            F    G +  +LPII+ +GD  E+  +         L P +  I R L + RL++ W+  
Sbjct: 62   FQIALGGRPVLLPIIRPVGDADEDIQSLSSGPDLEPLPPAMPLIDRHLAMTRLVMAWKGA 121

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            L      L  + PL LP S A+A WLA +L  ++D +ETEE  W +L  L  + +  +W 
Sbjct: 122  LRREALALRSDEPLGLPASTADAAWLAGDLLTLMDEVETEEADWSELAGLVPDDHARYWQ 181

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-LMKGTKGPIIIAGSTGSIPA 241
            +  DFLKI  + W   L EL    P   + AL+R EA+       KGP+I+AG TGS+PA
Sbjct: 182  ITLDFLKIVQEAWPAHLAELGKMDPKARRSALIRREAQRIAATPPKGPVIVAGVTGSVPA 241

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS------SNTTYSTHPQYS 295
            TA L+  VA    G IVLPGLD  +    W  + ++    T       +    S+HPQYS
Sbjct: 242  TAELLKAVAGLEQGVIVLPGLDLDLDDRSWEALGQRFVTGTRHGSDTKTPPPLSSHPQYS 301

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
            L +LLD L + R DV+ L +  + +  R  ++S++  P DTSD   + +    I      
Sbjct: 302  LKQLLDRLGVTRADVRALDDPGDILSQRQRLVSEALRPADTSDGWTSYLDATPIEVRSAA 361

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
             ++V+L+ A NE +EA+S+AIALR +++   + +ALI+ DR L RRV  EL R+ I  D 
Sbjct: 362  LNNVSLMTARNEADEALSLAIALREAIEL-GETAALISPDRMLTRRVAAELARWNIQADD 420

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            SAG PL  T  + +            + + +  L+KHPLA+ G P K +  A  ALE   
Sbjct: 421  SAGRPLDQTAPAILTILAAKLALNGCEPIDLLALLKHPLARLGLPIKDIRAAARALERGV 480

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            +RG +       L   V         N H P W+    E D ++   L   +   + PL 
Sbjct: 481  IRGERPRPGTDGLIMAVE-ACRAAAENAHTPRWKKVH-EGDWDVIADLAARLQSALAPLE 538

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET- 594
                +       + +    +  V  +Q +  DE      L+  E G+ L++ +S ++E  
Sbjct: 539  NMAGD----RDPVPVEHLVQAHVDVMQAISADETGAADELYAAEAGEALAAFWSGLLEAE 594

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
             S +     EW  +++ L+ G+ V+ ++ +   + ILG +E+RL  FD +ILGGLNEG W
Sbjct: 595  ASGLAVPPHEWPSVLSALMSGDAVRRRLPRDPRVQILGPMEARLQAFDFVILGGLNEGTW 654

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
            P+ T  +P+L+R M+ D+ L+  E+ +G AAHDF    G + ++ +R+ R +  PT+ASR
Sbjct: 655  PQRTRNDPWLNRPMKRDMGLEPPERRLGAAAHDFAQGMGAKRVLLSRAARADGAPTVASR 714

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY-TTKQPHYKRPKPFPPLEAQPRTYSFS 773
            WLQRL  L G +    ++ RG  Y      LD          RP P PPL A+P+T S +
Sbjct: 715  WLQRLTTLAGPEIAAGMEARGNRYSQLAALLDRQAGDVRPADRPAPKPPLGARPKTLSVT 774

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            EI++L+ DPYA++AR  L+L  +     +P   D+G L H+ + E +             
Sbjct: 775  EIERLVRDPYAIFARHSLELQPVDPIGGEPGAADKGNLIHDALAEFLSTWTGPFDETAVT 834

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI 891
             + +I +  FE  +  P I  +W   F +I+  F+  E K    +EK F+ I    ++ +
Sbjct: 835  ALLEIGEELFEPLDAFPAIRALWWPRFQRIAEGFVAFEAKRSLHVEKRFLEIGGGVELKL 894

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
              +   L G ADRIDL+ SG + + DYKTG  P ++    L+ PQL LEAA ++ G F  
Sbjct: 895  PGLDFRLRGRADRIDLMSSGSLSVIDYKTGQVPSQKQVDALLSPQLPLEAAMIQRGGFKD 954

Query: 952  IDCR-KVANLFYIRLKQK-FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
            +     V  L Y++LK     +  +  + K  + +EL E + + L +++      E  ++
Sbjct: 955  VPAGDPVGELLYLQLKGGTDAVLEVGRNPKDAALEELIEDAWQRLEQLIAHYAKEETGYL 1014

Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEYDI 1039
            S  R+ +   I   YDHLAR  EW    + 
Sbjct: 1015 SRARVMQGRQIDGPYDHLARAQEWALGGED 1044


>gi|62290944|ref|YP_222737.1| hypothetical protein BruAb1_2077 [Brucella abortus bv. 1 str. 9-941]
 gi|82700855|ref|YP_415429.1| hypothetical protein BAB1_2104 [Brucella melitensis biovar Abortus
            2308]
 gi|189025156|ref|YP_001935924.1| hypothetical protein BAbS19_I19680 [Brucella abortus S19]
 gi|254690235|ref|ZP_05153489.1| hypothetical protein Babob68_08702 [Brucella abortus bv. 6 str. 870]
 gi|254696351|ref|ZP_05158179.1| hypothetical protein Babob28_01193 [Brucella abortus bv. 2 str.
            86/8/59]
 gi|254731266|ref|ZP_05189844.1| hypothetical protein Babob42_08720 [Brucella abortus bv. 4 str. 292]
 gi|256258488|ref|ZP_05464024.1| hypothetical protein Babob9C_14307 [Brucella abortus bv. 9 str. C68]
 gi|260546207|ref|ZP_05821947.1| double-strand break repair protein AddB [Brucella abortus NCTC 8038]
 gi|260755776|ref|ZP_05868124.1| double-strand break repair protein AddB [Brucella abortus bv. 6 str.
            870]
 gi|260758999|ref|ZP_05871347.1| double-strand break repair protein AddB [Brucella abortus bv. 4 str.
            292]
 gi|260760723|ref|ZP_05873066.1| double-strand break repair protein AddB [Brucella abortus bv. 2 str.
            86/8/59]
 gi|260884800|ref|ZP_05896414.1| double-strand break repair protein AddB [Brucella abortus bv. 9 str.
            C68]
 gi|297247329|ref|ZP_06931047.1| double-strand break repair protein AddB [Brucella abortus bv. 5 str.
            B3196]
 gi|62197076|gb|AAX75376.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616956|emb|CAJ12060.1| conserved hypothetical protein [Brucella melitensis biovar Abortus
            2308]
 gi|189020728|gb|ACD73450.1| hypothetical protein BAbS19_I19680 [Brucella abortus S19]
 gi|260096314|gb|EEW80190.1| double-strand break repair protein AddB [Brucella abortus NCTC 8038]
 gi|260669317|gb|EEX56257.1| double-strand break repair protein AddB [Brucella abortus bv. 4 str.
            292]
 gi|260671155|gb|EEX57976.1| double-strand break repair protein AddB [Brucella abortus bv. 2 str.
            86/8/59]
 gi|260675884|gb|EEX62705.1| double-strand break repair protein AddB [Brucella abortus bv. 6 str.
            870]
 gi|260874328|gb|EEX81397.1| double-strand break repair protein AddB [Brucella abortus bv. 9 str.
            C68]
 gi|297174498|gb|EFH33845.1| double-strand break repair protein AddB [Brucella abortus bv. 5 str.
            B3196]
          Length = 1052

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRNHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|45505283|gb|AAS67013.1| AddB [Rhizobium etli]
          Length = 1064

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 461/1056 (43%), Positives = 639/1056 (60%), Gaps = 19/1056 (1%)

Query: 1    MHNK-KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQE 59
            M ++ +P + TI    PF + +   L +G L   FR++  +PL LA VTIY+PT+RA++ 
Sbjct: 1    MADRHQPRILTIPAGLPFLKTLATTLCDGRLTPLFRHESDDPLSLARVTIYLPTRRAVRV 60

Query: 60   LRSEFIEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLIL 117
            LRSEF+++ G +S ILP+I+ LG+  ++   F   L  + +L  P+SN  RLLELARLIL
Sbjct: 61   LRSEFVDLLGGRSAILPVIRPLGETDDDSGYFEEALPATIDLAQPLSNTARLLELARLIL 120

Query: 118  IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY 177
             WRNKLP+I++ ++ +SPL  P SPA+AIWLA+NLA++ID IETE+  W +L  L    Y
Sbjct: 121  AWRNKLPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWTELSKLDTGDY 180

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGST 236
              WW L A+FL+IAS +W ERL EL  SSP  ++ A++RAEA  +      GPIIIAGST
Sbjct: 181  AAWWQLTAEFLQIASAFWPERLSELGKSSPARHRNAILRAEATRISATKPAGPIIIAGST 240

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
            GS+PAT  L++ VAN P G IVLPGLD  +P   W  +  +      SN    +HPQY L
Sbjct: 241  GSVPATTDLIAAVANLPEGVIVLPGLDLSMPERHWQMVAPEPLPGQHSNPASRSHPQYGL 300

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
            + LL  L + R D+  L     ++  R+ ++S++  P + +              +   F
Sbjct: 301  SSLLKRLRLTRGDISLLDRPEADLNRRAEILSRALAPAEATSDWGAWKGALPEGALDSAF 360

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGIN 412
            +DV+LIEA NEREEA +IAIALR++L+   +     +ALIT DRNLARRV  EL+RFGI 
Sbjct: 361  ADVSLIEAANEREEATAIAIALRLALERPGRDGESRAALITPDRNLARRVMAELSRFGIL 420

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
             D SAG PLS T   ++L  LL A  +  D +AI +L+KHPLA+FG     L  A  ALE
Sbjct: 421  ADDSAGTPLSATPQGTLLQLLLEAALRPGDPVAIVSLLKHPLARFGLERDALISATEALE 480

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
            L+ALRG     DI  L+ L+  ++  Q  + H P W+  L  E    A  L   + +   
Sbjct: 481  LLALRGGVAEVDISALELLLTHQLGEQVLDRHAPQWRKALPAEAANAASELARRVTRATQ 540

Query: 533  PLV----TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
            PL      ++  +       ++S+W + T   L+ V  D H  L +LW  E G  L+SL 
Sbjct: 541  PLASALVRHRPEERGKTARFTLSEWAERTGRSLEAVAADPHGNLADLWSHEAGDALASLL 600

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
             ++I+T   I+A+  +WIDI+  L  G  VKP+      LFI GTLE+RL + DTLILGG
Sbjct: 601  GEVIDTDGQIEADGPQWIDIMAALAAGHAVKPRALNHPRLFIFGTLEARLQSVDTLILGG 660

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
            LNEG WP  +A NPF+ R+M++++ L+  E+ IGQ AHDFEMANGTRHLIY+R+LR+ + 
Sbjct: 661  LNEGSWPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGST 720

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
            PT+ASRWLQRLL LGG  F   L+ RG  YL W   +D    Q   +RP P PPL  QP+
Sbjct: 721  PTVASRWLQRLLALGGEAFEAALRGRGNRYLQWAGLIDRGEAQAPAQRPSPKPPLALQPK 780

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
            +YSFSE+ +L  DPYA+YARRIL+LD +  F +DP   +RGTL+H II   I++     T
Sbjct: 781  SYSFSEVGRLRRDPYAIYARRILRLDPVDAFNRDPGAAERGTLYHTIIDRFIREAHVAGT 840

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
            PE    M+ I+   F+ E LPPHID +WR  F +++ +FLE E   + +I +    +   
Sbjct: 841  PEAAAAMEWILTELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVRGG 900

Query: 889  MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
            + +E+I I L G ADRID+   G  DI DYKTG NP    A+ L+DPQL+LEAAAL AG+
Sbjct: 901  VELEAINIRLNGVADRIDITGPGAADIIDYKTGYNPSPAQARALLDPQLALEAAALSAGA 960

Query: 949  FSQIDCRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
            F         +L Y+RL+   +        +      K  SA +L+  S+  LI+ V+LL
Sbjct: 961  FRDAGSLIPQDLLYVRLRPGRRFQVDTVNNENSARSDKAKSAMDLAGVSVDQLIKFVSLL 1020

Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            Q+GE+ F S L  +++ +   +YDHLARV+EW    
Sbjct: 1021 QSGEKGFTSRLIPAQQFDFGGDYDHLARVSEWSTAE 1056


>gi|254707380|ref|ZP_05169208.1| hypothetical protein BpinM_10505 [Brucella pinnipedialis M163/99/10]
 gi|254709078|ref|ZP_05170889.1| hypothetical protein BpinB_02192 [Brucella pinnipedialis B2/94]
 gi|254713495|ref|ZP_05175306.1| hypothetical protein BcetM6_09104 [Brucella ceti M644/93/1]
 gi|254716149|ref|ZP_05177960.1| hypothetical protein BcetM_06896 [Brucella ceti M13/05/1]
 gi|256030603|ref|ZP_05444217.1| hypothetical protein BpinM2_08117 [Brucella pinnipedialis M292/94/1]
 gi|256158599|ref|ZP_05456489.1| hypothetical protein BcetM4_07036 [Brucella ceti M490/95/1]
 gi|256254010|ref|ZP_05459546.1| hypothetical protein BcetB_06878 [Brucella ceti B1/94]
 gi|261217922|ref|ZP_05932203.1| double-strand break repair protein AddB [Brucella ceti M13/05/1]
 gi|261221151|ref|ZP_05935432.1| double-strand break repair protein AddB [Brucella ceti B1/94]
 gi|261314863|ref|ZP_05954060.1| double-strand break repair protein AddB [Brucella pinnipedialis
            M163/99/10]
 gi|261316579|ref|ZP_05955776.1| double-strand break repair protein AddB [Brucella pinnipedialis
            B2/94]
 gi|261321228|ref|ZP_05960425.1| double-strand break repair protein AddB [Brucella ceti M644/93/1]
 gi|265987651|ref|ZP_06100208.1| double-strand break repair protein AddB [Brucella pinnipedialis
            M292/94/1]
 gi|265997111|ref|ZP_06109668.1| double-strand break repair protein AddB [Brucella ceti M490/95/1]
 gi|260919735|gb|EEX86388.1| double-strand break repair protein AddB [Brucella ceti B1/94]
 gi|260923011|gb|EEX89579.1| double-strand break repair protein AddB [Brucella ceti M13/05/1]
 gi|261293918|gb|EEX97414.1| double-strand break repair protein AddB [Brucella ceti M644/93/1]
 gi|261295802|gb|EEX99298.1| double-strand break repair protein AddB [Brucella pinnipedialis
            B2/94]
 gi|261303889|gb|EEY07386.1| double-strand break repair protein AddB [Brucella pinnipedialis
            M163/99/10]
 gi|262551579|gb|EEZ07569.1| double-strand break repair protein AddB [Brucella ceti M490/95/1]
 gi|264659848|gb|EEZ30109.1| double-strand break repair protein AddB [Brucella pinnipedialis
            M292/94/1]
          Length = 1052

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEVLENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|256060065|ref|ZP_05450247.1| hypothetical protein Bneo5_06871 [Brucella neotomae 5K33]
 gi|261324042|ref|ZP_05963239.1| double-strand break repair protein AddB [Brucella neotomae 5K33]
 gi|261300022|gb|EEY03519.1| double-strand break repair protein AddB [Brucella neotomae 5K33]
          Length = 1052

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDHDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGRFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|227823894|ref|YP_002827867.1| double-strand break repair protein AddB [Sinorhizobium fredii NGR234]
 gi|227342896|gb|ACP27114.1| double-strand break repair protein AddB [Sinorhizobium fredii NGR234]
          Length = 1059

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 452/1052 (42%), Positives = 642/1052 (61%), Gaps = 15/1052 (1%)

Query: 1    MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
            M  +  NVFTI    PF + +   LL G L  +F+Y+  +PL LA VTI+VPT+RA + L
Sbjct: 1    MPGRASNVFTIPAGLPFLKTLAEKLLGGVLTPDFQYESADPLALAGVTIFVPTRRAARVL 60

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILI 118
            RSEF+++ G +S ILP+I+ LG+  ++   F A++    +L PP+S  QRL+EL RLIL 
Sbjct: 61   RSEFVDLLGGRSAILPVIRPLGETDDDSGFFDAEMPAILDLAPPLSGTQRLIELGRLILA 120

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
            WRN+LP ++ D++ ESPL  P SPA+AIWLA+NLA++ID IETEE  W+ L  L   ++ 
Sbjct: 121  WRNRLPQVVLDIHAESPLIAPASPADAIWLARNLAELIDAIETEELDWDALDGLDGGEHA 180

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTG 237
            +WW L   FLKIA  YW ERL EL  SSP  ++ A+++AE + +  G   GPIIIAGSTG
Sbjct: 181  LWWQLTLAFLKIARIYWPERLDELKHSSPARHRNAMLKAETQRIAAGKVSGPIIIAGSTG 240

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY-STHPQYSL 296
            SIPATA L++ V   PNG IVLPGLD  +    W  I E + +   +      THPQY  
Sbjct: 241  SIPATAALIAAVKTLPNGTIVLPGLDLVMSETEWELIAEVAASGPPARGPASRTHPQYGF 300

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
             + L  + I+R DV  LG++ +++  R  V+S++ LP + +D         +   +   F
Sbjct: 301  HRFLKRMRIERLDVPVLGSLDDDLGYRGAVLSRALLPAEATDGWTEARGGFEPEKLLAAF 360

Query: 357  SDVALIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDI 415
            +DVALIEA NEREEA +IAIALR++L+ + + ++ALIT DR LARRV  EL RFGI  D 
Sbjct: 361  ADVALIEAANEREEAAAIAIALRLALEGDEESQAALITPDRGLARRVGAELARFGIEADD 420

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            SAG+PLS T   ++   L+ A  + +D +A+  L+KHPLA+FG       RA + LEL+A
Sbjct: 421  SAGVPLSATSAGALARLLIEATLRPDDPVALVALLKHPLARFGQTAVDTRRAADVLELLA 480

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL- 534
            LRG  +  DI  L++++   +A Q+   H   W+  + + D   A  L   I   + PL 
Sbjct: 481  LRGGTDLSDISGLEAVLDKALARQRTERHPRPWRRGIDQGDIARARALAGRISTAVEPLT 540

Query: 535  ---VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
                            L+++DW + T   L+ V +DE   L  LW  E G+ L++L   I
Sbjct: 541  STNAGGSEGGRHHSMVLTLADWAERTGRALEAVAIDERGSLGELWGSEAGEALATLLRSI 600

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            IET   ++A+  +W DI+  L   E VKP+  +   +FI G LESRL + D ++LGGLNE
Sbjct: 601  IETDGQMEADGRQWCDIVVALAASEAVKPRSMRHPRVFIFGALESRLQSVDLVVLGGLNE 660

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
            G WP  T+ +PFLSR M+S + L+  E+ IGQ AHDF+MA GTR LI +RS+R+ + PT+
Sbjct: 661  GTWPGQTSNDPFLSRTMKSGIGLEPPERRIGQLAHDFQMACGTRRLILSRSMRQGSAPTV 720

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            ASRW+QRL  LGG    + LK  G  YL W R LD   +QP  +RP+P PP+E QPR YS
Sbjct: 721  ASRWVQRLQALGGKTLTEQLKANGASYLHWMRILDGGERQPLSERPQPKPPVELQPRKYS 780

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            FSE+ +L  DPY++YARRIL+L+ I  F +DP   +RG L+H I+   +K   +  + + 
Sbjct: 781  FSEVTKLRRDPYSIYARRILRLEPIDSFNRDPGAAERGLLYHRIVDRFVKGGFDPASGDG 840

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
               M ++I   F++E LP HID IWR  F  ++ +FL  E + + +I + F   PA M +
Sbjct: 841  EEAMVRLIREAFDEEQLPAHIDTIWRPRFEAVARAFLSWERERRHTIVRSFTEAPAAMDV 900

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
                I LTG ADR+D L +G VDI DYKTG +P  + A+ L+DPQL+LEAAALKAG+F  
Sbjct: 901  GVSDIRLTGIADRLDRLANGTVDIIDYKTGSSPSAKEARALLDPQLALEAAALKAGAFGT 960

Query: 952  IDCRKVANLFYIRLKQKFKI------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
            I   +   L Y+RLK   +       +  +  ++  +A++L+E+SL  L +++  L +G+
Sbjct: 961  IGPARPHALRYVRLKPGSRFAVDTVNNENSKSRETKTAEQLAEESLAELRKLLAALTSGK 1020

Query: 1006 QPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
              F S L + ++ +   EYDHLARVAEW    
Sbjct: 1021 YGFASRLIVQKERDYGGEYDHLARVAEWATAD 1052


>gi|225853530|ref|YP_002733763.1| double-strand break repair protein AddB [Brucella melitensis ATCC
            23457]
 gi|256262986|ref|ZP_05465518.1| double-strand break repair protein AddB [Brucella melitensis bv. 2
            str. 63/9]
 gi|225641895|gb|ACO01809.1| double-strand break repair protein AddB [Brucella melitensis ATCC
            23457]
 gi|263092859|gb|EEZ17034.1| double-strand break repair protein AddB [Brucella melitensis bv. 2
            str. 63/9]
 gi|326410099|gb|ADZ67164.1| double-strand break repair protein AddB [Brucella melitensis M28]
 gi|326539816|gb|ADZ88031.1| double-strand break repair protein AddB [Brucella melitensis M5-90]
          Length = 1052

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 377/1044 (36%), Positives = 583/1044 (55%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA +++ +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMNQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L   +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCKSLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   + P  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDPPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|23502950|ref|NP_699077.1| hypothetical protein BR2102 [Brucella suis 1330]
 gi|254700732|ref|ZP_05162560.1| hypothetical protein Bsuib55_07727 [Brucella suis bv. 5 str. 513]
 gi|256370500|ref|YP_003108011.1| double-strand break repair protein AddB [Brucella microti CCM 4915]
 gi|261751244|ref|ZP_05994953.1| double-strand break repair protein AddB [Brucella suis bv. 5 str.
            513]
 gi|23348985|gb|AAN30992.1| conserved hypothetical protein [Brucella suis 1330]
 gi|256000663|gb|ACU49062.1| double-strand break repair protein AddB [Brucella microti CCM 4915]
 gi|261740997|gb|EEY28923.1| double-strand break repair protein AddB [Brucella suis bv. 5 str.
            513]
          Length = 1052

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|17988307|ref|NP_540941.1| putative cytoplasmic protein [Brucella melitensis bv. 1 str. 16M]
 gi|256045705|ref|ZP_05448583.1| putative cytoplasmic protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112425|ref|ZP_05453346.1| putative cytoplasmic protein [Brucella melitensis bv. 3 str. Ether]
 gi|260563007|ref|ZP_05833493.1| double-strand break repair protein AddB [Brucella melitensis bv. 1
            str. 16M]
 gi|265992126|ref|ZP_06104683.1| double-strand break repair protein AddB [Brucella melitensis bv. 1
            str. Rev.1]
 gi|265993863|ref|ZP_06106420.1| double-strand break repair protein AddB [Brucella melitensis bv. 3
            str. Ether]
 gi|17984080|gb|AAL53205.1| hypothetical cytosolic protein [Brucella melitensis bv. 1 str. 16M]
 gi|260153023|gb|EEW88115.1| double-strand break repair protein AddB [Brucella melitensis bv. 1
            str. 16M]
 gi|262764844|gb|EEZ10765.1| double-strand break repair protein AddB [Brucella melitensis bv. 3
            str. Ether]
 gi|263003192|gb|EEZ15485.1| double-strand break repair protein AddB [Brucella melitensis bv. 1
            str. Rev.1]
          Length = 1052

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 378/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA +++ +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMNQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|237816449|ref|ZP_04595442.1| double-strand break repair protein AddB [Brucella abortus str. 2308
            A]
 gi|237788516|gb|EEP62731.1| double-strand break repair protein AddB [Brucella abortus str. 2308
            A]
          Length = 1058

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 14   DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 73

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 74   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 133

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 134  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 193

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 194  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRNHPPAGPVIAAGSTGSI 253

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 254  PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 308

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 309  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 368

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 369  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 428

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 429  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 488

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 489  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 548

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 549  VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 604

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 605  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 664

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 665  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 724

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 725  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 784

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 785  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 844

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 845  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 904

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 905  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 964

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 965  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1024

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1025 ALPFRETDLTGDYDHLARVLEWSA 1048


>gi|254705104|ref|ZP_05166932.1| hypothetical protein Bsuib36_14511 [Brucella suis bv. 3 str. 686]
 gi|261755809|ref|ZP_05999518.1| double-strand break repair protein AddB [Brucella suis bv. 3 str.
            686]
 gi|261745562|gb|EEY33488.1| double-strand break repair protein AddB [Brucella suis bv. 3 str.
            686]
          Length = 1052

 Score =  630 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 378/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  D+   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEALENMVRDDTGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|161620014|ref|YP_001593901.1| double-strand break repair protein AddB [Brucella canis ATCC 23365]
 gi|161336825|gb|ABX63130.1| double-strand break repair protein AddB [Brucella canis ATCC 23365]
          Length = 1052

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  I  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDRDIDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  D+   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEALENMARDDTGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGIDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|260567426|ref|ZP_05837896.1| double-strand break repair protein AddB [Brucella suis bv. 4 str. 40]
 gi|260156944|gb|EEW92024.1| double-strand break repair protein AddB [Brucella suis bv. 4 str. 40]
          Length = 1052

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 378/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  D+   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEALENMARDDTGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGIDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|261215052|ref|ZP_05929333.1| double-strand break repair protein AddB [Brucella abortus bv. 3 str.
            Tulya]
 gi|260916659|gb|EEX83520.1| double-strand break repair protein AddB [Brucella abortus bv. 3 str.
            Tulya]
          Length = 1052

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 379/1044 (36%), Positives = 584/1044 (55%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L   +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLAETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|254694723|ref|ZP_05156551.1| hypothetical protein Babob3T_08698 [Brucella abortus bv. 3 str.
            Tulya]
          Length = 1058

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 379/1044 (36%), Positives = 584/1044 (55%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 14   DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 73

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 74   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 133

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 134  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 193

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 194  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 253

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 254  PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 308

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 309  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 368

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 369  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 428

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L   +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 429  GRHLRDVETATLLRLLAETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 488

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G      I+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 489  GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 548

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 549  VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 604

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 605  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 664

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+ SRWLQ
Sbjct: 665  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 724

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 725  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 784

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 785  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 844

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 845  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 904

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 905  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 964

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 965  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1024

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1025 ALPFRETDLTGDYDHLARVLEWSA 1048


>gi|241206970|ref|YP_002978066.1| double-strand break repair protein AddB [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240860860|gb|ACS58527.1| double-strand break repair protein AddB [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1064

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 461/1051 (43%), Positives = 635/1051 (60%), Gaps = 18/1051 (1%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            +P + TI     F + +   L +G L   FR+D  +PL LA VTIY+PT+RA++ LRSEF
Sbjct: 6    QPRIVTIPAGLSFLKTLATTLCDGRLTPIFRHDADDPLSLAKVTIYLPTRRAVRVLRSEF 65

Query: 65   IEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
            +++ G +S ILP+I+ LG+  ++   F   L  + +L  P+SN  RLLELARLIL WRNK
Sbjct: 66   VDLLGGRSAILPMIRPLGETDDDSGYFDEALPATIDLAQPLSNTARLLELARLILAWRNK 125

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            LP+I++ ++ +SPL  P SPA+AIWLA+NLA++ID IETE+  W +L  L    Y  WW 
Sbjct: 126  LPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWSELSKLDTGDYAAWWQ 185

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIPA 241
            L A+FL+IAS +W ERL EL  SSP  ++ A++RAEA  L      GPIIIAGSTGS+PA
Sbjct: 186  LTAEFLQIASAFWPERLAELGKSSPARHRNAILRAEASRLSATKPAGPIIIAGSTGSVPA 245

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            TA L++ VA+ P G IVLPGLD  +P   W  +  +      +N    +HPQY L+ LL 
Sbjct: 246  TADLIAAVAHLPEGVIVLPGLDLSMPERHWQMVAPEPAPGQHANPASRSHPQYGLSSLLK 305

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L + R D+  L     ++  R+ ++S++  P + +        +     +   FSDV+L
Sbjct: 306  RLKLTRADLTLLDRPEADLERRAEILSQALAPAEATSDWGAWKTDLPAGALSSSFSDVSL 365

Query: 362  IEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGINIDISA 417
            IEA NEREEA +IAIALR++L+   +     +ALIT DRNLARRV  EL+RFGI  D SA
Sbjct: 366  IEAANEREEATAIAIALRLALERPGQDSESRAALITPDRNLARRVMAELSRFGILADDSA 425

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G PLS     ++L  LL A  +  D +AI +L+KHPLA+FG     L  A  ALEL+ALR
Sbjct: 426  GTPLSAMPQGTLLQLLLEAALRPGDPVAIISLLKHPLARFGLERGALISATEALELLALR 485

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G     DI  L+ L+  ++A Q  + H P W+  LS E  + A  L   + Q   PL + 
Sbjct: 486  GGVAEVDISTLEPLLAHQLAEQALDRHAPQWRKALSPEAADAAYDLARRVTQATEPLASA 545

Query: 538  KTNKNS----TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
               +           ++S+W K T   L+ V +D H  L +LW  E G  L++L  ++I+
Sbjct: 546  LMRERPEDRGRTARFTLSEWAKRTGRSLEAVAVDPHGNLADLWSNEAGDALAALLGEVID 605

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
            T   ++A+  +WIDI+  L  G  VKP+      LFI GTLE+RL + DTLILGGLNEG 
Sbjct: 606  TDGQMEADGPQWIDIMAALAAGHAVKPRALSHPRLFIFGTLEARLQSVDTLILGGLNEGT 665

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
            WP  TA NPF+ R+M++++ L+  E+ IGQ AHDFEMANGTRHLIY+R+LR+ + PT+AS
Sbjct: 666  WPGQTANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGSTPTVAS 725

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
            RWLQRLL LGG  F   LK RG  +L W   +D    Q   +RP P PPL  QP++YSFS
Sbjct: 726  RWLQRLLALGGEAFEAELKGRGNRFLQWAALIDRGDAQAPAQRPSPKPPLALQPKSYSFS 785

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            E+ +L  DPYA+YARR+L+LD +  F +DP   +RGTL+H II   I++     TP+   
Sbjct: 786  EVGRLRRDPYAIYARRVLRLDPVEPFNRDPGAAERGTLYHKIIDRFIREAHIAGTPDAAA 845

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
             M+ I+   F+ E LPPHID +WR  F  ++ +FLE E   +  I K    +   M +E 
Sbjct: 846  AMEAILSELFDMEKLPPHIDAVWRPRFRAVARAFLEWEAGRRHGILKTLTEVRGGMELEP 905

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            I I LTG ADRID+      DI DYKTG NP    A+ L+DPQL+LEAAAL AG+F    
Sbjct: 906  INIRLTGVADRIDVTGPHSADIIDYKTGFNPSPAQARVLLDPQLALEAAALSAGAFRDAG 965

Query: 954  CRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                 +L Y+RL+   +        +      K  SA +L+ +S+  L++ V LLQ+ E+
Sbjct: 966  SLMPQDLLYVRLRPGSRFQVDTVNNESSARSDKAKSAMDLAAESIDQLVKFVGLLQSNER 1025

Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             F S L  +++ +   +YDHLARV+EW    
Sbjct: 1026 GFTSRLIPAQQFDFGGDYDHLARVSEWSTAE 1056


>gi|294851329|ref|ZP_06792002.1| double-strand break repair protein AddB [Brucella sp. NVSL 07-0026]
 gi|294819918|gb|EFG36917.1| double-strand break repair protein AddB [Brucella sp. NVSL 07-0026]
          Length = 1052

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + K  +F+I P  PF      AL+ G L+E F   P +PL LAS TIYVPT+RA + LR+
Sbjct: 8    DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120
              +++   KS ILP I  LGDV E+    +   +   +LNPP+   +RLL LARLI  WR
Sbjct: 68   ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              LP  ++ L+    +S+P + A+AIWLA++LA ++D +ET+  KW  L ++  +    W
Sbjct: 128  ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +   FL I ++ W + L E   S+P  ++  L+R+E + L      GP+I AGSTGSI
Sbjct: 188  WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+ST+A+ P GA+VLPGLD  +  A W  + E   N      +   HPQY L KL
Sbjct: 248  PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357
            L  +   R+DV  L ++      R  ++S++  P +T+D       +       +++  +
Sbjct: 303  LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV  EL RFGI+ D S 
Sbjct: 363  RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L     +++L  L+  +F   D +A+  LVKHPL + G        A   LELVA R
Sbjct: 423  GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G     DI+DL +    R+    +    P W + ++++  E A  L + +   + PL  +
Sbjct: 483  GGTGRADILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             T    T     I +  + TV  L+N+  DE   +   +  E G+ L+S    +I + + 
Sbjct: 543  VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +   A+EW  I+  L+ GETVKP       LFI G LE+RL   D +++GGLNEG WP  
Sbjct: 599  LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            T  +PF+SR M++ + L   E+  G AAHDF+MA G  H++ TRS R +N PT+  RWLQ
Sbjct: 659  TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPLRWLQ 718

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  + G D  + ++ RG  ++ W+R++D     P  ++P+P PP+ A+P+ +S +EI+ 
Sbjct: 719  RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA++A++ILKL  +    +DP   +RGTLFH+I+    +  I+   P+    + +
Sbjct: 779  LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896
            +    F   +LP  I+ +W   F  +   FL+ E +    +++ F  I   K  +E++GI
Sbjct: 839  LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L+G ADRIDL++ G  +I DYKTG  P  + A  L+ PQL+LEAA L  G+F  +   +
Sbjct: 899  TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958

Query: 957  VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              +L Y+RLK   ++       I+    + +A  L E++ + L +++   Q  E+ ++S 
Sbjct: 959  ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018

Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035
                 ++++  +YDHLARV EW  
Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042


>gi|83953058|ref|ZP_00961780.1| hypothetical protein NAS141_12156 [Sulfitobacter sp. NAS-14.1]
 gi|83842026|gb|EAP81194.1| hypothetical protein NAS141_12156 [Sulfitobacter sp. NAS-14.1]
          Length = 987

 Score =  625 bits (1612), Expect = e-176,   Method: Composition-based stats.
 Identities = 286/1048 (27%), Positives = 453/1048 (43%), Gaps = 82/1048 (7%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P VF +AP   F +E++  LL+       R +      +  + + V T+R  + LR
Sbjct: 4    PQDAPRVFGLAPGVDFPKELVRGLLS-------RLEGQPAHAIGRIDLVVNTRRMQRRLR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              F        ++LP I  + ++        L    +L  P   ++R LEL  L+    +
Sbjct: 57   DIF---DAGPPSLLPRIHLIDNLD------TLGSGVDLPRPGPALRRRLELITLVSKLLD 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            + P++                A+   L+ +LA +ID ++ E    E +  L        W
Sbjct: 108  QAPELAPR-------------ASLYDLSDSLAQLIDEMQGEGVPVEAVTELDVSDQSGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A  FL IA +Y  E +   +       +    R  AE      + P+I+AGSTGS   
Sbjct: 155  ERAKQFLAIAHQYLGESVTRPDP--RARQRQVAQRLIAEWEQNPPRHPVIVAGSTGSRGT 212

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            +A LM  VA  P GA+VLPG    +P A+W  + E              HPQY    LL 
Sbjct: 213  SALLMEAVAKLPQGALVLPGFCFDMPQAVWTDLGE------DQEKISQDHPQYRFRDLLR 266

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L++ R  ++   +       R+ ++S S  P   + +  T+    K+P++ +    + L
Sbjct: 267  QLEMSRSKIEAWTDTPPPSAARNALVSLSLRPAPVTHVWLTE--GPKLPDLHQATEGLTL 324

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            I+A   R EA++IA+ LR ++++  K +ALIT DR L+R+V   L R+ I  D SAG+PL
Sbjct: 325  IQAPTPRAEALAIALRLRQAVED-GKTAALITPDRMLSRQVTSALDRWNILPDDSAGLPL 383

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  + +   +  D  A+ TL+KHPL   G    +       LEL   R    
Sbjct: 384  HLSPPGRFLRHVGDLFLRKLDSEALLTLLKHPLTHSGGDRNFHQLNTQRLELQLRRDGLP 443

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              D   +  L    ++  K+   +  W   +     +                       
Sbjct: 444  YPDAEGVLKLARKTVSRSKDPAQMDVWADWVGTHLTDC---------------------- 481

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN-LWFEEEGKTLSSLFSKIIE-TGSCIK 599
                G+  + DW  L +     +        PN LW    G+  + + + + E      +
Sbjct: 482  -ELTGDRPLEDWVALHMALADAIADGATPSQPNGLWQHHAGEEAAKVMNDLAENAPYGGE 540

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +A ++ D++  L+    ++ +      + I GTLE+R+   D +ILGGLN+  WP+   
Sbjct: 541  MSAADYTDLVGALLQQGEIRDRDAPHPNVMIWGTLEARVQGADLVILGGLNDSTWPEAPP 600

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R M+    L   E+ IG +AHD++ +     +  TR++R +   T+ SRWL RL
Sbjct: 601  PDPWLNRQMRLKAGLLLPERRIGLSAHDYQQSIAAPEVCLTRAIRSDEAETVPSRWLNRL 660

Query: 720  LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              L       GG   +  + KRG  +LD  R L+  T+ P   RP P PP  A+P   S 
Sbjct: 661  GNLLNGLPAQGGDAAWKAMIKRGDHWLDQARALETVTRVPPAPRPSPRPPRAARPHALSV 720

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +EIK+LI DPYA+YA+  LKL  +    + PD   RG + H I+   IK    +      
Sbjct: 721  TEIKRLIRDPYAIYAKHSLKLRALNPLVQSPDAPVRGIIVHEIMERFIKSVTAEPALLTK 780

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI--PAKMA 890
              + +   +  E E   P   ++W     +I+  F+E+E   QS                
Sbjct: 781  SHLLETARTVLEAEAPWPAARVMWLTKIERIADWFIENELHRQSYSTPAAFEKAAKGSHE 840

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
               +G  L GFADRID  + G + I DYKTG  P     QK  D QL LEAA ++ G F 
Sbjct: 841  FPDLGFTLMGFADRIDRTEDGDILIYDYKTGTPPSVAE-QKAFDKQLLLEAAMVEEGGFK 899

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
            +I    VA   YI L  K        +      DE   + L  L  ++T   + EQ F +
Sbjct: 900  EIGPAPVAQAAYIGLGSKPVERPAPLE------DEPPHEVLAKLHALITSYLSDEQGFTA 953

Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038
              R+ + ++   +YD LAR  EW    +
Sbjct: 954  R-RMVKTTDFAGDYDQLARFGEWDATTE 980


>gi|83942009|ref|ZP_00954471.1| hypothetical protein EE36_07233 [Sulfitobacter sp. EE-36]
 gi|83847829|gb|EAP85704.1| hypothetical protein EE36_07233 [Sulfitobacter sp. EE-36]
          Length = 987

 Score =  623 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 286/1048 (27%), Positives = 453/1048 (43%), Gaps = 82/1048 (7%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P VF +AP   F +E++  LL        R +      +  + + V T+R  + LR
Sbjct: 4    PQDAPRVFGLAPGVDFPKELVRGLLA-------RLEGQPAHAIGRIDLVVNTRRMQRRLR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              F        ++LP I  + ++        L    +L  P   ++R LEL  L+    +
Sbjct: 57   DIF---DAGPPSLLPRIHLIDNLD------TLGSGVDLPRPGPALRRRLELITLVSKLLD 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            + P++                A+   L+ +LA +ID ++ E    E +  L        W
Sbjct: 108  QAPELAPR-------------ASLYDLSDSLAQLIDEMQGEGVPVEAVTELDVSDQSGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A  FL IA +Y  E +   +       +    R  AE      + P+I+AGSTGS   
Sbjct: 155  ERAKQFLAIAHQYLGESVTRPDP--RARQRQVAQRLIAEWEQNPPRHPVIVAGSTGSRGT 212

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            +A LM  VA  P GA+VLPG    +P A+W  + E              HPQY    LL 
Sbjct: 213  SALLMEAVAKLPQGALVLPGFCFDMPQAVWTDLGE------DQEKISQDHPQYRFRDLLR 266

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L++ R  ++   +       R+ ++S S  P   + +  T+    K+P++ +    + L
Sbjct: 267  QLEMSRSKIEAWTDTPPPSAARNALVSLSLRPAPVTHVWLTE--GPKLPDLHQATEGLTL 324

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            I+A   R EA++IA+ LR ++++  K +ALIT DR L+R+V   L R+ I  D SAG+PL
Sbjct: 325  IQAPTPRAEALAIALRLRQAVED-GKTAALITPDRMLSRQVTSALDRWNILPDDSAGLPL 383

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  + +   +  D  A+ TL+KHPL   G    +       LEL   R    
Sbjct: 384  HLSPPGRFLRHVGDLFLRKLDSEALLTLLKHPLTHSGGDRNFHQLNTQRLELQLRRDGLP 443

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              D   +  L    ++  K+   +  W   +     +                       
Sbjct: 444  YPDAEGVLKLARKTVSRSKDPAQMDVWADWVGTHLTDC---------------------- 481

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN-LWFEEEGKTLSSLFSKIIE-TGSCIK 599
                G+  + +W  L +     +        PN LW    G+  + + + + E      +
Sbjct: 482  -ELTGDRPLEEWVALHMALADAIADGATPSQPNGLWQHHAGEEAAKVMNDLAENAPYGGE 540

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +A ++ D++  L+    ++ +      + I GTLE+R+   D +ILGGLN+  WP+   
Sbjct: 541  MSAADYTDLVGALLQQGEIRDRDAPHPNVMIWGTLEARVQGADLVILGGLNDSTWPEAPP 600

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R M+    L   E+ IG +AHD++ +     +  TR++R +   T+ SRWL RL
Sbjct: 601  PDPWLNRQMRLKAGLLLPERRIGLSAHDYQQSIAAPEVCLTRAIRSDEAETVPSRWLNRL 660

Query: 720  LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              L       GG   +  + KRG  +LD  R L+  T+ P   RP P PP  A+P   S 
Sbjct: 661  GNLLNGLPAQGGDAAWKAMIKRGDHWLDQARALETVTRVPPAPRPSPRPPRAARPHALSV 720

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +EIK+LI DPYA+YA+  LKL  +    + PD   RG + H I+   IK    +      
Sbjct: 721  TEIKRLIRDPYAIYAKHSLKLRALNPLVQSPDAPVRGIIVHEIMERFIKSVTAEPALLTK 780

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI--PAKMA 890
              + +   +  E E   P   ++W     +I+  F+E+E   QS               A
Sbjct: 781  SHLLETARTVLEAEAPWPAARVMWLTKIERIADWFIENELHRQSYSTPAAFEKAAKGSHA 840

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
               +G  L GFADRID  + G + I DYKTG  P     QK  D QL LEAA ++ G F 
Sbjct: 841  FPDLGFTLMGFADRIDRTEDGDILIYDYKTGTPPSVAE-QKAFDKQLLLEAAMVEEGGFK 899

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
            +I    VA   YI L  K        +      DE   + L  L  ++T   + EQ F +
Sbjct: 900  EIGPAPVAQAAYIGLGSKPVERPAPLE------DEPPHEVLAKLHALITSYLSDEQGFTA 953

Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038
              R+ + ++   +YD LAR  EW    +
Sbjct: 954  R-RMVKTTDFAGDYDQLARFGEWDATTE 980


>gi|126724546|ref|ZP_01740389.1| putative Helicase/Exonuclease [Rhodobacterales bacterium HTCC2150]
 gi|126705710|gb|EBA04800.1| putative Helicase/Exonuclease [Rhodobacterales bacterium HTCC2150]
          Length = 975

 Score =  622 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 274/1048 (26%), Positives = 440/1048 (41%), Gaps = 97/1048 (9%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             +  P  F +A    F   ++ ++L+       R     P  +A+  IYV T R  + L+
Sbjct: 4    PSVNPRFFGLAMGVDFPAAIVSSILD-------RLQNTPPETIANTVIYVNTSRMQRRLQ 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
            S F       +  LP I  +  + E            L  P+  ++R L LA+L+     
Sbjct: 57   SLFAAR---GAMFLPRILLITQITEH------PALIGLPQPMPKLRRRLVLAQLVRKLLK 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              PD+                  A  LA +LA ++D ++ E   ++DL  L    +   W
Sbjct: 108  TAPDLAPQHA-------------AFELADSLASLLDEMQGEGVGFDDLRELDVAHHSAHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIP 240
              +  FL I   Y  +++ E         Q A +   +    K   + P+++ GSTGS  
Sbjct: 155  ERSLKFLSIVETYLADQVDE---MDSEAQQRAAVDRLSRVWEKSPPQHPVMVVGSTGSRG 211

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
            ATA+ M  VA+ P GA+VLPG D  +P + W  + +  +           HPQ+   + +
Sbjct: 212  ATAKFMHLVASLPQGAVVLPGFDVDMPQSTWAALGDALSG--------EDHPQFRFKQFM 263

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
            +        V      +     R+ ++S +  P   ++   ++    K+ ++ +   D+ 
Sbjct: 264  EH------GVHDWIKATPVSSTRNRLVSLALRPAPVTNEWLSE--GPKLGDLVEATKDIT 315

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            LIEA++ REE+ +IA+ALR ++++    +ALIT DR L+R+V   L R+ I  D SAG+P
Sbjct: 316  LIEANSRREESQTIALALRKAVED-GVSAALITPDRELSRQVSAALDRWNIRADDSAGLP 374

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL-AKFGFPEKYLSRAKNALELVALRGN 479
            L  T     L  +     +     ++  L+KHPL            R    LEL   R  
Sbjct: 375  LHLTPPGRFLRLVAGFFGQAVTAESLLILLKHPLTCSIKDQRGAHLRWVRELELRLRRYG 434

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                   DL +                        + ++  V  VD I  C         
Sbjct: 435  PAFPTADDLSAWAT--------------------AQKEDGLVEWVDWINACFAGCNEI-- 472

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI-IETGSCI 598
                  G  S+SD     +     +          LW E+EGK  + +   +  E     
Sbjct: 473  ------GTQSLSDHLTHHLKMANQLAAGPDDSEHQLWAEDEGKAATKIMEGLQDEAHQGG 526

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
            K    E+  ++  L+     +  +E    + I GTLE+R+   D +ILGGLNEG+WP + 
Sbjct: 527  KMAPFEYAALLHSLLQDGEARSSVEAHPDVMIWGTLEARVQGADLVILGGLNEGIWPGDA 586

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
            A +P+L+R ++    L   E+ IG AAHDF+ A     +I TR++R     T+ SRWL R
Sbjct: 587  APDPWLNRSLRHQAGLLLPERRIGLAAHDFQQAIAAPKVILTRAIRNAEAETVPSRWLYR 646

Query: 719  LLVLG--------GTDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRT 769
            L  L         G      ++ RG+ +    + LD          RP P PP++ +P+ 
Sbjct: 647  LTSLLDGLRGDQNGNAALAEMRFRGRAWQSLAQALDRPDAPVVPMTRPSPCPPIDVRPKL 706

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S +EI+ LI DPYA+YA+ +L L  +   +  PD   RGT+ H I  +  K   +    
Sbjct: 707  LSVTEIQTLIRDPYAIYAKHVLGLTALDPLRPTPDPRLRGTIIHEIFHKFSKATKSGMPE 766

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
                L+    D  F KE   P    IWR    + +H F+E E   +      +      +
Sbjct: 767  NAIDLLLTTTDDVFAKEIPWPATRRIWRARLARNAHWFVETEIARRKLATPTYFETKGHI 826

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
             I +  + + G ADRID+   G + I DYKTG  P     Q   D QL +EAA  + G F
Sbjct: 827  PIPNTPVAIKGTADRIDVAPDGQLIIYDYKTGSPPSPNVIQS-FDKQLLIEAAMAENGGF 885

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
                   V+ L YI L +  K   I   K   S           L +++   Q+  + + 
Sbjct: 886  MDSGPSPVSGLVYIGLARTPKEQKIDLTKHSVS------DVWAGLSDLLGQYQSLTKGYT 939

Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            S   + ++++ + ++DHLAR  EW    
Sbjct: 940  SRRAMQKEADAR-DFDHLARFHEWDVSD 966


>gi|307942841|ref|ZP_07658186.1| double-strand break repair protein AddB [Roseibium sp. TrichSKD4]
 gi|307773637|gb|EFO32853.1| double-strand break repair protein AddB [Roseibium sp. TrichSKD4]
          Length = 1058

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 334/1054 (31%), Positives = 517/1054 (49%), Gaps = 28/1054 (2%)

Query: 8    VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67
            V++I  S PF + +  AL++GTLV  FR    +PLLL + T+Y+PT+RA + L   F ++
Sbjct: 9    VYSIPSSVPFLKTLATALVDGTLVPGFRP-LDDPLLLPTATLYLPTRRAARLLPEIFQDL 67

Query: 68   TGKKSTILPIIKSLGDVVEEKFTADLLLSYN-LNPPVSNIQRLLELARLILIWRNKLPDI 126
             G K  +LP+I+ +GD  E+            L P +  ++R L + RL++ W+  L   
Sbjct: 68   FGGKPVLLPVIRPVGDTEEDLQLLSAEADGEALPPSMPVLERHLAMTRLVMAWKGALRRE 127

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
            + +L    PL +P S A+A WLA +L  ++D IETEE  W D+  L  + +  +W +  D
Sbjct: 128  VLNLGLNEPLGVPASAADAAWLAADLLSLMDEIETEEADWSDIAKLVPDDHARYWQITLD 187

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPATARL 245
            FLKI  + W   L E     P   + AL+R EAE L     KGP+I+AG TGS+PATA L
Sbjct: 188  FLKIVQEAWPAHLAERGLMDPKARRSALIRKEAERLLTNPPKGPVIVAGVTGSVPATAAL 247

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNT-------ITEKSTNITSSNTTYSTHPQYSLAK 298
            +  V+     AIVLPGLD  + T+ W                   S    S HPQYSL K
Sbjct: 248  LKAVSRLDRSAIVLPGLDLTMDTSSWEALEGPSPKAGTIIKPGGKSMPGLSAHPQYSLKK 307

Query: 299  LLDFLDIKREDVKRLGN-VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
            +L  L + R  V  LG      +  R  ++S++  P +TSD     +   +         
Sbjct: 308  ILSELQVDRSAVSCLGEKPEPALQARERLLSEAMRPAETSDGWMAYLGRVREKERAAALE 367

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            +V+LI A NE +EA+SIAIALR +L+   + +ALI+ DR L RRV  EL R+ I +D SA
Sbjct: 368  NVSLIAARNEADEALSIAIALREALE-VGETAALISPDRFLTRRVASELARWKIQVDDSA 426

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G PL  T  + +            D + +  L+KHPL + G P K    A  ALE   LR
Sbjct: 427  GRPLDQTPPAILAILTAKLALYGCDPLDLLALLKHPLCRLGLPAKDNRSAARALERGVLR 486

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNN------THVPHWQSRLSEEDKELAVLLVDHILQCI 531
            G + +     LK  V       +        +       ++ E D  +   LV  +   +
Sbjct: 487  GPRAAPGTAGLKDAVDAARLEAEKRMAEEGTSRELPRWKKIHEADWTVLSDLVTQLGNAL 546

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             PL             + I D  +     +  +  DE      L+ EE G   ++   ++
Sbjct: 547  APLEAIA----DLTAPMPILDLAEAHARAVAAIAEDETGSPDELYAEEAGDVFAAFMVEL 602

Query: 592  IET-GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +    + ++    +W  ++T L+ G  V+ ++     + ILG LE+RL  FD +ILG LN
Sbjct: 603  LSAKDTGLELKPADWPAVLTALMSGHAVRRRLPGDPRVQILGPLEARLQQFDRVILGSLN 662

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
            EG WP+ T  +P+L+R M+ DL L+  E+ IG +AHDF M  G + +I  R+ R +  PT
Sbjct: 663  EGTWPQKTRNDPWLNRPMKRDLGLEPPERRIGASAHDFCMGFGAKTVILARAARADGAPT 722

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK-QPHYKRPKPFPPLEAQPRT 769
            +ASRWLQRL  L G D   ++  RG  Y D    +D          RP P PP+  +P+ 
Sbjct: 723  VASRWLQRLTTLAGPDITKDMSGRGAVYSDLAEAIDRADGLVTPAPRPNPAPPVAIRPKQ 782

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S +EI++LI DPYA++AR +L L  +     +P+  D+G + H+ + + +         
Sbjct: 783  LSVTEIERLIRDPYAIFARHVLDLQPVDPIGGEPNAADKGNIIHDALAKFLSDWDGPFNE 842

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-- 887
                 +  I +  F   +  P +  +W   F +I+  F+  E +    +E  ++ +    
Sbjct: 843  TAVAHLVSIGEKLFAPLDAFPSVRALWWPRFLRIADGFVAFEARRAPKVEHRYLEVGGGV 902

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             + + S+   L G ADRID++++G + I DYKTG  P  +  + L+ PQL LEAA +   
Sbjct: 903  DLKLPSLDFLLKGRADRIDVMENGSIAILDYKTGQVPSLKQVEALLAPQLPLEAAMITRA 962

Query: 948  SFSQIDCRKV-ANLFYIRLKQK-FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
             F+ I   +  +   Y++LK     +     + K     EL E +   L  +V      E
Sbjct: 963  GFNDIPADRSFSEFLYLQLKGGTDPVIEAPRNPKDCDLKELGEDAFARLETLVVHYSKPE 1022

Query: 1006 QPFISHLRLSEKSNIQSEYDHLARVAEWREEYDI 1039
              ++S  R+ ++ +I   +DHLARVAEW    + 
Sbjct: 1023 TGYLSRARVMKERDIAGPFDHLARVAEWSSAGED 1056


>gi|114769725|ref|ZP_01447335.1| hypothetical protein OM2255_09161 [alpha proteobacterium HTCC2255]
 gi|114549430|gb|EAU52312.1| hypothetical protein OM2255_09161 [alpha proteobacterium HTCC2255]
          Length = 985

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 277/1051 (26%), Positives = 449/1051 (42%), Gaps = 89/1051 (8%)

Query: 1    MHNKK--PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQ 58
            M + K  P VF +     F R  +  L +       R     P  LA V +++ T+RA +
Sbjct: 1    MFDSKNIPRVFKVPVGVDFSRVFLDGLKS-------RLHEKEPHELARVIVFINTRRAER 53

Query: 59   ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118
            +L+  FIE     S++LP    + D+ ++          NL     +  R++ L +LI  
Sbjct: 54   KLKELFIE---SGSSLLPQFHLITDLSDDPLKL-----CNLPAQAPSHHRMINLGQLIRK 105

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
                 PD+                +    LA++L+ ++D  + E  +  D+  L   ++ 
Sbjct: 106  LLLTEPDLAP-------------ISATYDLAESLSALMDEAQGEGIQMTDVLNLDVGEHS 152

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTG 237
              W  +  FL I + +W +       + P      ++   A+H     T   I+IAGSTG
Sbjct: 153  AHWNRSKKFLSILATHWKQNA----LTDPEDRMRHVVETYAKHWDINPTNQTILIAGSTG 208

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            S  ATA  M  +A  PNGA++LPG+D  +P  +W+ +  K   +         HPQ   A
Sbjct: 209  SRGATALFMKAIAKLPNGAVILPGVDDDLPKDVWSALKTKKFTL--------DHPQAGFA 260

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
            KL D L I  +DV      +     R+ +IS +  P   ++         K P + K   
Sbjct: 261  KLFDLLKIDFDDVDPWHKANIRNIDRNKLISLALRPAPITNQWLEYGPLLK-PYLNKATQ 319

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            D+ LIEAD  +EEA++IA  LR + ++  + + LI+  RNL RRV   L R+ I  D SA
Sbjct: 320  DLELIEADTIKEEALAIATRLRFATEQ-GQAAVLISPSRNLTRRVNANLARWNIEADDSA 378

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G PL  +     L S+               L+KHPL   G      +     +E+    
Sbjct: 379  GTPLQLSTTGIFLRSIAQCFGNSTLSYDFLALLKHPLTHSGKGRNIHNLMTMEIEVGQFN 438

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            G K                     + H   W                  + +   PL   
Sbjct: 439  GAKILRGGPPFIDF-DILSGWATKDPHKTIWVKW---------------LTRIFQPLRDA 482

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCL-DEHRKLPNLWFEEEGKTLSSLFSKIIETG- 595
            K  +        +S+W  L     + +    E+     +W ++ GK       +I+    
Sbjct: 483  KEME--------LSEWLNLLKKTAETLSSSPENDIDAKVWEKDSGKAALKTLDQILHQSV 534

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
            S    + IE+   +  ++  E        +  + I GTLE+R+ + D +ILGGLNE  WP
Sbjct: 535  SSGIMSNIEFNAFLRSILSQELRSETQSANPLISIWGTLEARVQSKDLVILGGLNEDTWP 594

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
                 + +L+R M+  L+L   E+ IG +AHDF+ A    +++ +RSLRE + P+  SRW
Sbjct: 595  SKPNHDMWLNRDMRKQLSLLLPERRIGLSAHDFQQAVSAHNVVLSRSLREGDTPSTPSRW 654

Query: 716  LQRLLVLG------GTDFFDNLKKRGQCYLDWTRKLDYTTKQ---PHYKRPKPFPPLEAQ 766
            L R+  L       G +  D ++  G  +L + R LD   +    P   RP P PP  A+
Sbjct: 655  LIRITNLMQGLKNEGPNALDEMRNNGNQWLTYARSLDRVDETKKIPFETRPSPIPPENAR 714

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
                S ++IK L+ DPY +YA  ILKL  +    K  D  +RG   H I+ E I++  N+
Sbjct: 715  LEKLSVTQIKDLVRDPYKIYASVILKLKKLDPLGKQADAIERGNTIHTILEEFIRQTQNE 774

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                 ++L  +I +   +K+   P    +W      IS SF+E E K ++    I +   
Sbjct: 775  LPENASNLFMKITNEVLKKDVPWPAAQRLWLARMQAISSSFIEEEIKRRAVGINIALERY 834

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             ++  + +   LT  ADRID  K+G + + DYK    P     Q   D QL LEA     
Sbjct: 835  GEIDFQDLKFKLTAKADRIDQGKNG-LRLYDYKASKPPSLGDIQY-FDKQLQLEAMIAFH 892

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
              F++I  + + +L YI L  + K   +  D ++ S      K +     ++    +  +
Sbjct: 893  DGFNKIRKQSIEHLEYISLGPELKKQPLDIDDQEIS------KIVDEFRNLILTYNDPSK 946

Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             F +  ++    N  S+YD L+R  EW++  
Sbjct: 947  GFTARDKIQF-LNHISDYDQLSRKGEWQDSD 976


>gi|304392406|ref|ZP_07374347.1| double-strand break repair protein AddB [Ahrensia sp. R2A130]
 gi|303295510|gb|EFL89869.1| double-strand break repair protein AddB [Ahrensia sp. R2A130]
          Length = 1070

 Score =  613 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 320/1060 (30%), Positives = 510/1060 (48%), Gaps = 29/1060 (2%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRY----DPLNPLLLASVTIYVPTKRAIQELRS 62
            N+ +I P + F + ++  L+ G LVE F         +PL LA VTI+VPT+RA + L +
Sbjct: 9    NIVSIPPGAAFLQTLVEKLVCGELVEGFAPFADGAESDPLALAGVTIWVPTRRAARSLAT 68

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTAD------LLLSYNLNPPVSNIQRLLELARLI 116
            +F+   G ++ +LP I +LGD  EE            LL  +    +      L L+RL+
Sbjct: 69   QFVTRLGNRAAVLPRIVTLGDGDEEGLEFQRFVAGNDLLVPSEAQAIDPFIHTLTLSRLV 128

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
              W + L +  + +     + +P S A+AI  A  L  +++ I TE+ +W  L+ L    
Sbjct: 129  HSWASALRENERAMMGGGDIIMPSSLADAIGFAGELGSLMESIATEDIEWSQLNLLDVAD 188

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGS 235
            +  WW L   FL IAS      L E     P   +  L+R +A+ +   G+ GP+I AGS
Sbjct: 189  HADWWQLTLKFLTIASDAMPAFLHERGLEEPARLRGRLIREQAQQYREHGSTGPVIAAGS 248

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
            TGSIPATA L+  +A  PNGA+VLPGLD  +    W+ +     N  + + T   HPQY 
Sbjct: 249  TGSIPATADLLQAIAALPNGALVLPGLDRDLDDESWSKVD-LPDNAKNEDGTAPGHPQYG 307

Query: 296  LAKLLDFLDIKREDVKRLG------NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
            L KLL  + + R   +           S  +  R  ++S++  P  T+D       +   
Sbjct: 308  LKKLLTSMKLSRGHDEIEHITLSAEPDSGPLRVREHIVSEALRPSATTDKWQDFATKYDD 367

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
                +  + V+++EA  ER+EA++IA+ALR +++     +AL+T DRNLARRV +E+ RF
Sbjct: 368  AQKAEALAGVSIVEARGERQEALAIALALRETIETEGATAALVTPDRNLARRVAVEMRRF 427

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
             I +D SAG PL      +     L   F   D +A+  L+KHP  + G P         
Sbjct: 428  DIVVDDSAGQPLRNRPAGTFARLALATAFGPIDPVALTGLLKHPDLRLGLPRAKARHGAR 487

Query: 470  ALELVALRGNKNSYD---IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
             LEL  LRG     +     D    +   +     +   P   S +     +  +LL+D 
Sbjct: 488  LLELAILRGAIMPPERGFFEDAAQTLRRTLLQVIADEKTPRAHSTIVRMSDDEWLLLIDF 547

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
              +    +       +       +  W + T   ++ + +DEH +L   +   +G  L  
Sbjct: 548  CQRLDEAV--LLIEDDVLNTKQPLDRWGQCTTAFIEALAIDEHGELAPFYNTTDGAALHG 605

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
              ++++++G  +   A  W D+   L+   TV+ +      + ILG LE+RL  FD ++L
Sbjct: 606  FLAQLLDSGEELDTTADHWPDVFDALMGQRTVRAQGGTDPRIAILGPLEARLQTFDRVVL 665

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
            GGLNEG WP     +PFLSR M++ L L + E+  G AAHDF+M  G   ++ TR+ R +
Sbjct: 666  GGLNEGTWPAAARNDPFLSRPMKAQLGLPSPERRTGLAAHDFQMMMGMADVVLTRAARAD 725

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-HYKRPKPFPPLEA 765
            N PT+ASRW+QRL+++ G+     +++RG+ + DW   +D   +     +RP P PP++ 
Sbjct: 726  NAPTVASRWVQRLMLVAGSHATTAMQERGRKFTDWVTAIDAPKETEKPAQRPAPKPPVDV 785

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
            +P   S + +   I DPYA+YA+ IL L  +    +D D  +RG L+H +  E ++  IN
Sbjct: 786  RPNRLSVTAVATWIEDPYAIYAKHILGLQPLQPLIRDADARERGELYHQVFEEFVRSGIN 845

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
                     +     + F +  +P      W   F +I+  FL    +  +   K+ V  
Sbjct: 846  PEADHAMDQLLLSAKAVFGEAEIPQEFIAQWLPRFTEIAEEFLSWHARQIAGGHKVTVER 905

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
              +      G  LT  ADR+D    G   I DYKTG +P    A+ +  PQL LEAA   
Sbjct: 906  SGRTEKGLNGFTLTARADRMDRDVDGRFIIYDYKTGASPTAARARDMKAPQLPLEAAMTI 965

Query: 946  AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE----LSEKSLKNLIEIVTLL 1001
             G+F      +VA   Y+RL            +  +   +    ++E++ K L  ++   
Sbjct: 966  RGAFGDDLQGEVAGFGYLRLIPGTPKFADMAVQPDHGDPDMATQIAEEAWKRLGAMIKKY 1025

Query: 1002 QNGEQPFISHLRLSEKSNIQ-SEYDHLARVAEWREEYDIS 1040
            ++  QP+ S+ R  ++     S+YDHLAR+ EW    D S
Sbjct: 1026 RDKSQPYRSYNRPPKERRSYSSDYDHLARLGEWSNGADDS 1065


>gi|163732945|ref|ZP_02140389.1| hypothetical protein RLO149_09805 [Roseobacter litoralis Och 149]
 gi|161393480|gb|EDQ17805.1| hypothetical protein RLO149_09805 [Roseobacter litoralis Och 149]
          Length = 985

 Score =  613 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 266/1048 (25%), Positives = 442/1048 (42%), Gaps = 86/1048 (8%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            +  P VF +AP   F + ++  LL        R     P  LA V + V T R  + LRS
Sbjct: 5    SDTPRVFGLAPGVDFPKGLMQGLLE-------RVSQTAPEELARVQVIVNTSRMQRRLRS 57

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
             F       + +LP I  +  + +      L     + P V  ++R LEL  L+     +
Sbjct: 58   LF---DAGPARLLPKIHLVTQLDQ------LAPGIAVPPAVKPLRRRLELIALVARLIEQ 108

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
              ++                 +   L  +LA ++D ++ E    + ++ L        W 
Sbjct: 109  QKELAPR-------------TSLYDLTDSLAALMDEMQGEGVTADTINGLDVSDLSGHWQ 155

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPA 241
                F++IA  Y +              Q   + A A+       + P+I+AGSTGS   
Sbjct: 156  RTQTFIRIAQDYLSRTTTTP---DKEAQQRQFVSALADRWAIDPPRHPVILAGSTGSRGT 212

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  LM  +A  P GA+VLPG D  +P   W  + +   +          HPQY   KL+ 
Sbjct: 213  TMLLMEAIARLPQGALVLPGFDFDMPRQQWLHLDDALLS--------EDHPQYRFYKLMQ 264

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             + + R D+    N       R+ ++S S  P   +D   T+    K+  + +    + L
Sbjct: 265  HIGVGRSDISPWHNAPPPSPARNALVSLSLRPAPVTDAWLTE--GPKLHTLNEATQQITL 322

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA + R EA++IA+ LR ++++  +K+A+IT DR L R++   L +F I  D SAG PL
Sbjct: 323  LEAPSPRSEALAIALRLRKAVED-GQKAAVITPDRMLTRQITAALDQFDILPDDSAGAPL 381

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  +     +  D  A+ TL+KHPL                LEL   R    
Sbjct: 382  HLSPPGRFLRHVAALFHRRLDAEALLTLLKHPLTHSSTNRAEHILNTQRLELRIRRDGLP 441

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              D   ++  +       ++   V  W + + +                           
Sbjct: 442  YPDADSIQVALSGVSPNPEHQNAVDVWGTWVGQ-----------------------TFAS 478

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKL-PNLWFEEEGKTLSSLFSKIIE-TGSCIK 599
              T G   ++ W +  +   + +           +W ++ G+    + + + +       
Sbjct: 479  VQTSGEHPLTHWAQAHMALAEAISSGPFGHDTGEIWKQKAGQEALKVMTNLTDLAHHGGP 538

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              A ++ +++  L+    V+ +      + I GTLE+R+   D +IL GLN+G WP+   
Sbjct: 539  MTASDYGNLVGALLSEGEVRDRDAPHPDVMIWGTLEARVQGADLVILAGLNDGTWPEAPT 598

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R ++    L   E+ IG AAHD++ A     +  TRS+R ++  T+ASRW+ RL
Sbjct: 599  PDPWLNRALRHQAGLLLPERRIGLAAHDYQQAIAAPEVWLTRSIRSDDAETVASRWVNRL 658

Query: 720  LVLG-------GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              L        G    + +K RG  +LD T  L+         RP P PPL+A+P+  + 
Sbjct: 659  CNLLSGLKGQDGPALLEAMKNRGTFWLDQTVLLEKVEPAAPAARPAPRPPLDARPKRLAV 718

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            ++IK LI DPY VYA+ +L+L  +    + PD   RGT+ H ++ + +++ +        
Sbjct: 719  TDIKHLIRDPYTVYAKHVLRLRKLGPLVQSPDALLRGTVSHQVMEDFVRRTLADPATLTA 778

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMA 890
              +  + D    ++   P    +W     +IS  F+ +E   Q     +        KM 
Sbjct: 779  QDLVDVADEVLMRDVPWPAARALWLARLTRISEWFVVNERARQHIGMPVAFEEDAVGKMV 838

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
               I   LT  ADRID  + G V I DYKTG  P  +  Q L D QL +EAA ++ G+F 
Sbjct: 839  WPDIKFTLTARADRIDQTEDGDVLIYDYKTGSPPTVKQ-QTLFDKQLLIEAAMVEQGAFE 897

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
            ++  + VA   +I L           D +         + L  L ++V   Q  +Q F +
Sbjct: 898  KLGPQHVAQATFIGLGSNPSEVPAPLDSEPP------AQILAELRKLVLAYQEMDQGFTA 951

Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038
              R+ EK    S+YD L+R  EW    D
Sbjct: 952  R-RMMEKDQYGSDYDLLSRYGEWDVTQD 978


>gi|149912863|ref|ZP_01901397.1| hypothetical protein RAZWK3B_02705 [Roseobacter sp. AzwK-3b]
 gi|149813269|gb|EDM73095.1| hypothetical protein RAZWK3B_02705 [Roseobacter sp. AzwK-3b]
          Length = 978

 Score =  612 bits (1578), Expect = e-172,   Method: Composition-based stats.
 Identities = 275/1045 (26%), Positives = 450/1045 (43%), Gaps = 87/1045 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
              ++P VF +     F R ++  LL        R+    P  LA V + V T+R  + +R
Sbjct: 4    PTERPRVFGVPLGVDFPRALVDGLLA-------RHASQPPEALARVQVIVNTRRMARRIR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
            + F +     + +LP I+ L D+ E           ++  PV  ++R LEL +L+    +
Sbjct: 57   ALFDQ---GPALLLPRIELLTDLGEHW------DLAHIPDPVPPLRRRLELTQLVSSLLD 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            K PDI                ++   LA +LA ++D +  E    + +  L        W
Sbjct: 108  KQPDIAPR-------------SSLYALADSLASLMDEMHGEGVSPDAIEGLDVTDQSGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                 FL I   Y+       +  +    ++ +              PIIIAGSTGS  A
Sbjct: 155  DRITAFLGIVRHYFDVGTEHPDVET--RQRLVIEHVIETWQETPPDHPIIIAGSTGSRGA 212

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  LM  V+  P GA++LPG D  +PT +W  + +   +          HPQY  A L+ 
Sbjct: 213  TQLLMQAVSKLPQGAVLLPGFDVDMPTHVWGALDDAMLS--------EDHPQYRFADLMG 264

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L +   ++ R    S     R+ ++S +  P   +D    D     + ++ +   D+ L
Sbjct: 265  KLGLSPGEIARWTPDSPACPARNRLLSLALRPAPVTDQWLQD--GPSLTDLDRATQDITL 322

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA + R EA++IA+ LR + ++  + +ALIT DR + R+V   L R+GI  D SAG+PL
Sbjct: 323  LEAPSTRSEALAIAMRLRQAAED-GQTAALITPDRTVTRQVTAALDRWGIIPDDSAGMPL 381

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  + + +        + TL+KHPL   G       R    LEL   R    
Sbjct: 382  HLSPPGRYLRHVGDLMRDTLTAELLLTLLKHPLTHSGTDRGPHLRLTRELELHLRRNGPP 441

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              D   L +                        +    A      I  C           
Sbjct: 442  YPDAASLIAWGE--------------------AQKDTTAAPWARWISDCFCA-------- 473

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN-LWFEEEGKTLSSLFSKIIETG-SCIK 599
             +  G+L +S++ +  +     +        P+ LW  + G+      S + E      +
Sbjct: 474  KAVNGDLPLSEFVERHIDLANRIAQGPVDSSPHGLWRNDAGQEAWKCVSNLAEHANHGGE 533

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              A ++  +   ++ G  V+        + I GTLE+R+   D LIL GLNEG WP+   
Sbjct: 534  ITAADYGTLFHAILSGGEVRNPDAPHPQILIWGTLEARVQGADLLILAGLNEGSWPEAPK 593

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R +++   L   E+ IG +AHDF+ A     +  TRS+R ++  T+ SRWL R+
Sbjct: 594  PDPWLNRALRNQAGLLLPERRIGLSAHDFQQAASAPEVWMTRSIRSDDAETVPSRWLNRI 653

Query: 720  LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              L       GG    +++K RG  +L     L+     P  KRP P PPL A+PR +S 
Sbjct: 654  RNLLAGLPDQGGAQALEDMKARGAHWLRLVASLEEPGYVPAEKRPSPCPPLAARPREFSV 713

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +EIK+LI DPYA+YAR +L++  +    K PD   RGT+ H ++   IK   +  T    
Sbjct: 714  TEIKRLIRDPYAIYARHVLRVRPLDPLMKVPDALLRGTVLHEVLDRFIKDSQHDETLCTR 773

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
              +  + +S   +         IWR    +++  F++ E   +   +   +       ++
Sbjct: 774  DHLMAVTESVLAQNVPWAEARAIWRARMDRVADWFIDGEFDRRQIAQPCALEQSGIATLD 833

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             +G+ L   ADRID+  +G + I DYKTG  P  +  QK  D QL LEAA  +   F Q+
Sbjct: 834  DLGVTLKAKADRIDIDATGSLHIYDYKTGKPPSAKE-QKYFDRQLLLEAAIAEQAGFGQL 892

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
               +VA   +I L  K +      D      +E  +K      E++      ++ + +  
Sbjct: 893  APSQVARAQFIGLGSKPETVLAPLD------EEPVQKVWIEFEELMRAYLEPDRGYTARR 946

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037
             + +K++   +YD LAR  EW    
Sbjct: 947  AVFKKADK-GDYDQLARFGEWDITD 970


>gi|254511546|ref|ZP_05123613.1| double-strand break repair protein AddB [Rhodobacteraceae bacterium
            KLH11]
 gi|221535257|gb|EEE38245.1| double-strand break repair protein AddB [Rhodobacteraceae bacterium
            KLH11]
          Length = 975

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 282/1045 (26%), Positives = 447/1045 (42%), Gaps = 88/1045 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P VF + P + F + ++  L         R+    P  LA V + V T+R  + +R
Sbjct: 4    PTTLPRVFAVPPGADFPKVLVNGL-------RRRFAGQPPDALARVQLVVNTRRMARRVR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              F +       +LP +  L D+ E            + P +  ++R LEL +LI    +
Sbjct: 57   DLFDQ---GAPCLLPRLSLLTDLGE------SADLAQVPPAIPPLRRRLELTQLISKLLD 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            + PD+                ++   L+ +LA +ID ++ E    + +H L        W
Sbjct: 108  QQPDLAAR-------------SSLFDLSDSLAGLIDEMQGEGVSPDAIHQLDVSDMSGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A  F+ IA  +       L+A      +  +    A         P+I+AGSTGS   
Sbjct: 155  ARAQAFIGIADHFMNAGADALDA--QARQRRVVENLIARWQANPPHHPVILAGSTGSRGT 212

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  LM  VA  P GA+VLPG D   P  +W  + E  T+          HPQY   KL+ 
Sbjct: 213  TLMLMQAVARLPQGALVLPGYDFDQPGPVWRNLDEALTS--------EDHPQYRFRKLML 264

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L +  + ++R          R+ ++S +  P   +D   T+     +P+++    DV L
Sbjct: 265  GLGLTPDHIQRWSADQAPSPARNKLVSLALRPAPVTDAWMTE--GPDLPDLEGATRDVTL 322

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA + R EA++IA+ LR + +   + +ALIT DR L R+V   L R+ I  D SAG+PL
Sbjct: 323  VEAPSPRAEALAIALRLREAAE-TGQTAALITPDRMLTRQVSAALDRWNILPDDSAGLPL 381

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  +     +  D  A+ TL+KHPL   G            LEL   R    
Sbjct: 382  QLSPPGRFLRHVAGLFARRLDGEALLTLLKHPLCHDGGDRGAHLLHTRDLELDLRRHGPP 441

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              D   L +  +                        E     V  ++             
Sbjct: 442  FPDSASLTAFAI----------------------RTETPEDWVRWVVGTFCD-------- 471

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI-IETGSCIKA 600
                G   ++DW +   T  + +          LW +  G+   ++ + +  E       
Sbjct: 472  QHKPGEQPLTDWVEQLCTLAEAISAGASGDTGRLWDKNAGQKALAVITALQTEAKYGGGM 531

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
             A ++ D++  L+ GE V+ +      L I GTLE+R+   D LILGGLNEG WP+  A 
Sbjct: 532  TAHDFADLLGALLAGEEVRDRDAPHPHLMIWGTLEARVQGADLLILGGLNEGSWPEAAAP 591

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR-- 718
            +P+L+R M+    L   E+ IG +AHDF+ A G   +  TR++R ++  T+ SRWL R  
Sbjct: 592  DPWLNRQMRDAAGLLLPERRIGLSAHDFQQAIGAPEVFVTRAIRSDDAETVPSRWLNRIT 651

Query: 719  -----LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
                 L   GGTD    ++ RGQ +L     L+   +     RP P PP+ A+PR  S +
Sbjct: 652  NLLQGLPAQGGTDALTAMRARGQLWLGRAEMLEQAPRITAAIRPSPRPPVAARPRRLSVT 711

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            E+K+LI DPY +YAR +L+L  +    + PD   RG + H ++   I+  +         
Sbjct: 712  EVKRLIRDPYDIYARHVLRLKPLDPLVQAPDALLRGIVIHEVLEHFIRDSVLDPALLTRE 771

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
               +   +   +    P    +W     +I+ SFL  E + ++    +   +  K+A+  
Sbjct: 772  NFLKRASTLLNEYVAWPTARKLWLARLERITDSFLSAELQRRNDGCPVAFEVAMKLALAP 831

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            +   + G ADRID    G + I DYKTG  P +   Q   D QL +EAA  + G     D
Sbjct: 832  LDFTIAGRADRIDRSGHGALRIIDYKTGTPPTENQ-QAKFDKQLLIEAAIAEQGGVDGFD 890

Query: 954  CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
               VA   +I +   +K       K      E ++K L  L E+++     +Q F S   
Sbjct: 891  PLPVAQAIFIGMGGTYKEVPAPLQK------EPADKVLSELKELISAYLEPDQGFSSRRM 944

Query: 1014 LSEKSNIQSEYDHLARVAEWREEYD 1038
            L + ++I  +YDHLAR  EW    +
Sbjct: 945  LHKDTDI-GDYDHLARFGEWDRSTE 968


>gi|110677845|ref|YP_680852.1| hypothetical protein RD1_0453 [Roseobacter denitrificans OCh 114]
 gi|109453961|gb|ABG30166.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 985

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 267/1048 (25%), Positives = 443/1048 (42%), Gaps = 84/1048 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
            H+  P VF +AP   F + +I  LL        R     P  LA V + V T R  + LR
Sbjct: 4    HSDTPRVFGLAPGVDFPKGLIEGLLA-------RVAQGAPEDLARVQLIVNTSRMQRRLR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
            S F       + +LP I  + ++        L     + P V  +QR LEL  L+     
Sbjct: 57   SLF---DAGPARLLPKIHLVTELDR------LAPGLAVPPAVKPLQRRLELIALVARLIE 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            +   +                A+   L  +LA ++D ++ E    E +++L        W
Sbjct: 108  QQKGLAPR-------------ASLYDLTDSLAALMDEMQGEGVTAETINSLDVSDISGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                 F++I   Y  +     +       +  +        ++  + P+I+AGSTGS   
Sbjct: 155  QRTQTFIRIVQDYLAQTTTTPDK--EAQQRQFVCALAERWAVEPLRHPVILAGSTGSRGT 212

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  LM  +A  P GA++LPG D  +P   W  + +   +          HPQY   KL+ 
Sbjct: 213  TMLLMEAIARLPQGALILPGFDFDMPHQQWLHLDDALLS--------EDHPQYRFYKLMQ 264

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             + + R D+    +       R+ ++S S  P   +D   T+    K+ ++ K    + L
Sbjct: 265  NIGVGRSDITPWHDAPPPSPARNALVSLSLRPAPVTDAWLTE--GPKLHDLNKATDQITL 322

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA + R EA++IA+ LR +++E  +K+A+IT DR L R++   L +F I  D SAG PL
Sbjct: 323  LEAPSPRSEALAIALRLRKAVEE-GQKAAVITPDRMLTRQITAALDQFDILPDDSAGAPL 381

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  +     +  D  A+ TL+KHPL   G            LEL   R    
Sbjct: 382  HLSPPGRFLRHVAALFHRRLDAEALLTLLKHPLTHSGSNRAAHILNTQRLELRIRRDGLP 441

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              D   +   +        +   V  W + + +                           
Sbjct: 442  YPDADSIGQALAGISPNADHQRGVDAWGAWVGQ-----------------------TFAA 478

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKL-PNLWFEEEGKTLSSLFSKIIE-TGSCIK 599
              +     +S W +  +   + +      +    LW ++ G+    + + + E       
Sbjct: 479  MYSTTEQPLSHWAQTHIALAEAISCGLDGQDTGELWKQKAGQEALKVMTNLAELAHHGGP 538

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              A ++ +++  L+    V+ +      + I GTLE+R+   D +IL GLN+G WP+  A
Sbjct: 539  MTASDYANLVGALLSEGEVRDRDAPHPDIMIWGTLEARVQGADLVILAGLNDGTWPEAPA 598

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R ++    L   E+ IG AAHD++ A     +  TRS+R ++  T+ASRW+ RL
Sbjct: 599  PDPWLNRALRHQAGLLLPERRIGLAAHDYQQAIAAPEVWLTRSIRSDDAETVASRWVNRL 658

Query: 720  LVLG-------GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              L        G    + ++ RGQ +LD T  L+         RP P PPL A+P+  + 
Sbjct: 659  CNLLSGLKGQDGPALLEAMQDRGQYWLDQTVALEKVEPATPAARPAPRPPLAARPKRLAV 718

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            ++IK LI DPY +YA+ +L+L  +    ++PD   RGT+ H+++ + +++ +        
Sbjct: 719  TDIKHLIRDPYTIYAKHVLRLRKLGPLVQNPDALLRGTVSHDVMEKFVRQTLRDPATLNA 778

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMA 890
              + +I      ++   P    +W     +IS  F+ +E   Q     +        KM 
Sbjct: 779  DHLIEIARDVLSRDVPWPAARALWLARLTRISEWFVMNERARQHIGTPVVFEDDALGKMV 838

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
               I   LT  ADRID  + G   I DYKTG  P  +  Q L D QL +EAA ++ G+F 
Sbjct: 839  WPDIEFTLTARADRIDQTEDGDALIYDYKTGSPPTVKQ-QTLFDKQLLIEAAMVEQGAFE 897

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
            ++    VA   +I L           D +         + L  L  +V   +  +Q F +
Sbjct: 898  KLGPHHVAQATFIGLGSNPVEVPAPLDSEPP------AQILAELRMLVLAYKEMDQGFTA 951

Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038
              R+ EK    S+YD L+R  EW    D
Sbjct: 952  R-RMMEKDQYGSDYDLLSRYGEWDITQD 978


>gi|126734387|ref|ZP_01750134.1| hypothetical protein RCCS2_09509 [Roseobacter sp. CCS2]
 gi|126717253|gb|EBA14117.1| hypothetical protein RCCS2_09509 [Roseobacter sp. CCS2]
          Length = 975

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 272/1048 (25%), Positives = 444/1048 (42%), Gaps = 96/1048 (9%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            +K+P++F   P   F + ++  L+        R   L+P  LA V IYV T R  + +R+
Sbjct: 5    DKQPHIFASPPGVDFAQGLVAGLIA-------RTADLDPTDLARVEIYVNTTRMQRRIRA 57

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
             F       + +LP ++ + D+  +       +S +L P VS +QR LEL++ +    +K
Sbjct: 58   VF---DTGPARLLPRVRLITDLAND------PISLDLPPAVSPLQRRLELSQFVAKLLDK 108

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
             PD+                A    L+ +LA ++D ++ E    + + +L        W 
Sbjct: 109  EPDLAPR-------------AALYDLSDSLAKLMDEMQGEGVSPDKIASLDIADQSGHWE 155

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPA 241
             A  FLKI + ++ ++            Q  ++ A A+       + PI+IAGSTGS  A
Sbjct: 156  RALAFLKIITPFFDQQNEPP---DKEARQRMVIEALAQKWETAPPQHPILIAGSTGSRGA 212

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            TA  M  VA  P GAI+LPG D  +P  +W+ + +        + T   HPQ+   +L+D
Sbjct: 213  TALFMQAVAKLPQGAIILPGFDFDLPDHVWDAMDD--------DLTAEDHPQFRFRRLMD 264

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             +  +R DV+     S     R+ ++S S  P   +D   ++     + ++ +    + L
Sbjct: 265  LIGFQRHDVREWSTQSPAHPARNALVSLSLRPAPVTDQWLSE--GPDLGDLYEATKGLTL 322

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA + R EA +IA+ LR + ++    +ALI+ DR L R+V   L R+ I  D SAG PL
Sbjct: 323  VEAASPRAEAETIALRLRQAAED-GITAALISPDRMLTRQVTAALDRWDIKPDDSAGTPL 381

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNK 480
            + +     L  + +   K     A+ TL+KHPL            R    LEL   R   
Sbjct: 382  ALSPPGRFLRHVADLFGKPLTGEALLTLLKHPLCHSARDDRGEHLRHTRDLELHLRRFGP 441

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                  DL +      A +                           +   I  L      
Sbjct: 442  PFPKPEDLLTWAKKGSARE----------------------DWAMWLAGLIAGLEDL--- 476

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN-LWFEEEGKTLSSLFSKII-ETGSCI 598
                  +  ++      +   + +C          LW E  G+        +I    +  
Sbjct: 477  -----ASRPLAHHLDQHIILAEQLCAGPTASGSGGLWDEAAGREARKTCDNLIQAAAAGG 531

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                 ++  +   +I   TV+ +      + I GTLE+R+   D  ILGG+N+GVWP+  
Sbjct: 532  TMTPHDYTALFGSVIAEGTVRDRDAGHPGILIWGTLEARVQGVDLTILGGMNDGVWPEAP 591

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
              +P+L+RVM++   L   E+ IG +AHD++ A     +  TR+ R  +  T+ SRW+ R
Sbjct: 592  PPDPWLNRVMRAKAGLLLPERRIGLSAHDYQQAVAGHEVWITRAKRSADAETVPSRWVNR 651

Query: 719  LLVLG-------GTDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRTY 770
            L  L        G D    +  +G  +      L     + P   RP P PP+ A+P+  
Sbjct: 652  LTNLLKGLPDQNGPDALAAMCAKGDQWSAMAAVLSTPQARVPSAPRPSPCPPVAARPKKL 711

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S ++IK LI DP+ +YAR+ L L  +       D   RGT+ H I+   I+     N  +
Sbjct: 712  SVTQIKTLIRDPFTIYARKTLHLSPLDPLVPTADAPLRGTIMHRILERFIRAGHGPNDRD 771

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                + Q+    F      P I   W     + +  FL  E   Q+      + +  ++ 
Sbjct: 772  A---LMQLASEEFTAHCPWPTIRAQWMARMERSADQFLADEADRQALATDHKIEVYGEIV 828

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            +   G+ LT  ADRIDL K+G   I DYKTG  P K   Q   D QL LEAA ++ G+F 
Sbjct: 829  VAPSGVLLTCKADRIDLTKTGAALIYDYKTGAVPTKNQ-QLTFDKQLLLEAAMVELGAFE 887

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
             +    V    +I +    K      +      D   ++    L  +     +  + + +
Sbjct: 888  SLGSMSVGGATFIGVNAAMKNVPAPLN------DNPPDQVWGELETLFGNWHDPSRGYTA 941

Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038
             L L  K++  S+YDHL+R  EW    D
Sbjct: 942  RLALFLKTDQ-SDYDHLSRHGEWDTSDD 968


>gi|254438249|ref|ZP_05051743.1| double-strand break repair protein AddB [Octadecabacter antarcticus
            307]
 gi|198253695|gb|EDY78009.1| double-strand break repair protein AddB [Octadecabacter antarcticus
            307]
          Length = 977

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 261/1048 (24%), Positives = 442/1048 (42%), Gaps = 92/1048 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
              + P VF +     F R +   L          ++P+ P  +A V IYV T+R  + L 
Sbjct: 4    PIEIPRVFGVPLGQDFSRALYDGLKAS-------FEPMAPTDVACVEIYVNTRRMQRHLT 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
            S F +     + +LP I+ + D+ ++          ++ P ++ ++R LE+A+L+    +
Sbjct: 57   SLFHQ---GDALLLPRIRLITDLAQDAVGR------DIPPAIAPLRRRLEVAQLVKGLID 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              P                S   AI LA +L  ++  ++ E    E +  L        W
Sbjct: 108  ADP-------------TLASQDAAIDLADSLVALMSEMQGEGVAPETVANLDVTDQSGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIP 240
              A  F+++  +++ +     +     G Q  ++    E         P+I+AGSTGS  
Sbjct: 155  QRALSFIQLVQQFFVD-----DRLDGEGRQRHVIETLVERWADAPPNHPVIVAGSTGSRG 209

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
            AT+  M  VA  P GA++LPGLD  +P  +W+ + +K             HPQY      
Sbjct: 210  ATSLFMQAVAKLPQGAVILPGLDHDMPAHVWDMMEQKKGG--------EDHPQYRFKAFC 261

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
            D L I+  D++  G+ +     R+ +IS S  P   +           + ++ +    + 
Sbjct: 262  DALGIRPSDIRTWGDKTKINVARTGLISLSLRPAPVTHQWI--NDGPDLGDLGEATKGIT 319

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            LIEA   R +A +IA  LR ++++ ++ +ALI+ DR L R+V   L R+ I  D SAG+P
Sbjct: 320  LIEAPTPRAQADAIAARLRQAVED-RQTAALISPDRMLTRQVTAALDRWDITPDDSAGLP 378

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L  T     L  + +   +  D   +  L++HPL              NALEL   R   
Sbjct: 379  LQLTAPGRFLRHIADLFCEPLDAERLLVLLRHPLC--NSERGNHGLHTNALELEVRRNGP 436

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                   L +          +     HW        K+                      
Sbjct: 437  PFPTDESLTNWADGTKDKHPDRVAWVHWIGATLLNLKDPR-------------------- 476

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDE-HRKLPNLWFEEEGKTLSSLFSKII-ETGSCI 598
                     +  +    V   + +           LW +  G+    L S++     +  
Sbjct: 477  ------PHELGTFLDEHVKISERLAAGPNTDGSGELWKKGAGREAFRLMSELRTHADAGG 530

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
               A ++  ++   +     + + +    + I GTLE+R+ + D +IL GLNEG WP+  
Sbjct: 531  VMTARDYRQLVGSTLADGEDRDRDQGHPQVLIWGTLEARVQSADLVILAGLNEGTWPETP 590

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
              +P+L+R ++    L   E+ IG +AHD++ A   R ++ +R++R +   T+ SRW+ R
Sbjct: 591  TPDPWLNRPLRMRAGLLLPERRIGLSAHDYQQAVCAREVVLSRAVRSDEAETVPSRWINR 650

Query: 719  LLVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTY 770
            L  L       GG  + D +++RGQ +L  T  +           RP P PP + +P   
Sbjct: 651  LTNLLGGLDEKGGPAYLDAMRERGQHWLTLTASIAAPPFTVDPAPRPSPCPPTDVRPDRL 710

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S ++IK LI DPYA+YAR+IL L+ +      PD   RGT+ H ++   +K  I+     
Sbjct: 711  SVTQIKTLIRDPYAIYARKILGLNSLDSLAHTPDAPLRGTIVHKVLERFVKANIDPTNAG 770

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                +  I     E+    P +  +W       +  FL  E+K ++    +   I  ++ 
Sbjct: 771  AAGALLAIATDVLEERCPWPAVRALWFARIASFTPHFLAEEQKRRAYSANVDTEIRGELK 830

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            + ++   LTG ADRID+   G   I DYKTG  P     QK  D QL LEAA ++ G+F+
Sbjct: 831  LANLPFTLTGTADRIDMSNDGEALIYDYKTGKTPSPAQ-QKYFDKQLLLEAAMVERGAFT 889

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
             +   +     YI L           D+     DE  +++      ++    +  + + S
Sbjct: 890  ALGSVRTKAAVYIGLGSD------LKDQSAPLNDETPDETWARFEGLIAKWMDPSKGYTS 943

Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038
                +E  + +  YDHLAR  EW E +D
Sbjct: 944  R-SANEIVSFEGSYDHLARYGEWDETHD 970


>gi|13474240|ref|NP_105808.1| hypothetical protein mll5084 [Mesorhizobium loti MAFF303099]
 gi|14024992|dbj|BAB51594.1| mll5084 [Mesorhizobium loti MAFF303099]
          Length = 1044

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 371/1039 (35%), Positives = 582/1039 (56%), Gaps = 23/1039 (2%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             VF+I P +PF   +  ALL G LV  FR+D  +PL LA VTIYVPT+RA + LR  F++
Sbjct: 6    RVFSIPPGAPFLPTLAEALLAGRLVPGFRFDG-DPLALADVTIYVPTRRAARALRGVFVD 64

Query: 67   ----ITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
                  G  S ILP+I+ LG+  E++  F A+   + +L PP+S  +RLL L  L+  W+
Sbjct: 65   SLKGRGGGGSAILPVIRPLGEFDEDEALFDAEPSAAIDLAPPISATERLLLLTSLVRAWK 124

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
             +LP+ +  L+ E  + +P S A+AIWLA++LA ++D IETE   W  L  L       W
Sbjct: 125  RRLPEHVAKLFAEE-IVIPASTADAIWLARDLAGLMDEIETEGTDWTKLADLVTGNLAGW 183

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +  +FL I +  W + L E + S+P  ++ AL+RAEA  L +    GP+I AGSTGSI
Sbjct: 184  WQVTLEFLGIVTDAWPKFLSESDRSNPAAHRSALIRAEAARLRRNPPAGPVIAAGSTGSI 243

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L++ ++  P GAIVLPGLD  +  A +  +                HPQY LA+L
Sbjct: 244  PATAELLAVISRLPGGAIVLPGLDRTLDEASFQALVAPGA-----RPAVLGHPQYGLARL 298

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            +  + + R DV+ +G    ++  R+ ++ ++  P +T+++           +I   F +V
Sbjct: 299  IGKIGVLRSDVEEVGAAEPQLALRAALVGEALRPAETTELWAETRSGFSASDIAGAFGEV 358

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
             L+EA +ER+EA++IA+AL+ ++++  +++AL+T DR LARRV +EL RFG+  D S G 
Sbjct: 359  TLLEAASERDEAVAIAVALKQAVEQPGQRAALVTGDRALARRVAVELKRFGVVADDSGGT 418

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            PL+ +  +S+L   L A+F+  D + + +L+KHPL   G     +  A   +ELVALRG 
Sbjct: 419  PLANSPAASLLRLALEAVFRPGDPVGLLSLLKHPLLGLGLERAAVRHAAELVELVALRGG 478

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                DI+ L  L  +R+    +++  P W SRL+    E A  L+  + + + PL  ++ 
Sbjct: 479  TGRPDIVSLPELFENRLIGLGDDSRPPFWFSRLTVRSIEDARSLLARLTEALAPLSAFRG 538

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
            +      N  ++   + +V  L+N+       L  L+  + G+ L+ L   ++   + + 
Sbjct: 539  HA-----NADLAALVQASVVALENLGRSADGGLAELYAGDAGEKLAELLRGLVAASASLS 593

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              A EW D++  LI  ETVKP       + I G LE+RL + D L++GGLNEGVWP+   
Sbjct: 594  FAASEWPDVMDALIAPETVKPAQGTDRNIAIWGALEARLQDVDMLVIGGLNEGVWPRKPE 653

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             + F+SR+M++ ++L+  E+ IG AAHDF+MA G RH++  RS R  + P + SRWLQRL
Sbjct: 654  SDRFMSRLMKTGIDLEPPERRIGLAAHDFQMAMGARHVVLARSARSGDAPAVPSRWLQRL 713

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            L   G D    L++RG   L W R+LD   KQ    RP+P PPL  +P  +S +EI+ L 
Sbjct: 714  LTFIGNDQAATLRRRGDELLAWARELDTGAKQDFAPRPQPKPPLAVRPTHFSVTEIESLR 773

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
             DPYAVYARRIL L  +    +DP   +RGTLFH I+     +  +   P+    +    
Sbjct: 774  RDPYAVYARRILGLMPLDALIRDPGAAERGTLFHAILHLFSSEVADPRAPDALAGLIAAG 833

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP-AKMAIESIGIHL 898
             + F +  LP  ++ +W   F K++ + +E E     ++ +        K  +   G+ L
Sbjct: 834  RACFVEAALPADVEAVWWPRFEKLAANIVEWERTRADAVTRRHAEERAGKTLVGQSGVTL 893

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
            +G+ADR+DLL  G  DI DYKTG +P K  A  L+ PQL+LE A L+ G+F  +  R+ +
Sbjct: 894  SGYADRVDLLAGGMADILDYKTGSSPSKAQAHTLLAPQLALEGALLRRGAFKDLGAREPS 953

Query: 959  NLFYIRLKQKFKIDC---ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015
             L +IRLK   ++     + ++++  +A +L+E++   L +++    + +  ++S     
Sbjct: 954  QLAFIRLKPNGEVFEESILEHNRQPRTAADLAEEAWARLEKLLIHYTDPQTGYLSRALPF 1013

Query: 1016 EKSNIQSEYDHLARVAEWR 1034
             +     +YDHLARV EW 
Sbjct: 1014 REGETDGDYDHLARVLEWS 1032


>gi|260463223|ref|ZP_05811425.1| double-strand break repair protein AddB [Mesorhizobium opportunistum
            WSM2075]
 gi|259031073|gb|EEW32347.1| double-strand break repair protein AddB [Mesorhizobium opportunistum
            WSM2075]
          Length = 1044

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 369/1039 (35%), Positives = 569/1039 (54%), Gaps = 23/1039 (2%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR----S 62
             VF+I   +PF   +  ALL G LV  FR+D  +PL LA VTIYVPT+RA + LR     
Sbjct: 6    RVFSIPSGAPFLPTLAEALLAGRLVPGFRFDG-DPLALADVTIYVPTRRAARALRGVFVD 64

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
                  G  S ILP+I+ LG+  E++  F A+   + +L PP+   +RLL L  L+  W+
Sbjct: 65   SLKARGGGGSAILPVIRPLGEFDEDEAAFEAEPSAAIDLAPPIGATERLLLLTPLVRAWK 124

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
             +LP  +  L+ E  + +P S A+AIWLA++LA ++D IETE   W  L  L       W
Sbjct: 125  RRLPAHVAKLFAEE-IVIPASTADAIWLARDLAGLMDEIETEGTDWAKLEGLVTGNLAGW 183

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +  +FL I +  W + L E + S+P  ++ AL+RAEA  L +    GP+I AGSTGSI
Sbjct: 184  WQVTLEFLGIVTDAWPKFLEEQDRSNPAAHRSALIRAEAARLRRNPPAGPVIAAGSTGSI 243

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L++ +A  P GAIVLPGLD  +  A +  +                HPQY LA+L
Sbjct: 244  PATAELLAAIARLPGGAIVLPGLDRTLDEASFQALVAPGA-----RPAVLGHPQYGLARL 298

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            +  + + R DV+ +G     +  R+ ++ ++  P +T+++          P+I   F+DV
Sbjct: 299  IGKIGVLRGDVEEIGVAEPRLALRAALVGEALRPAETTELWAETRNAFSAPDIAAAFADV 358

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
             L+EA +ER+EA++IA+AL+ +++E  +++AL+T DR LARRV +EL RFG+  D S G 
Sbjct: 359  TLLEAASERDEAVAIAVALKRAVEEPGQRAALVTGDRALARRVSVELKRFGVVADDSGGT 418

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            PL+ +  +S+L   L A+F+  D + + +L+KHPL   G     +  A   +ELVALRG 
Sbjct: 419  PLANSPAASLLRLALEAVFRPGDPVGLLSLLKHPLLCLGLGRADVRHAAELVELVALRGG 478

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                DI  L  L   R+      +  P W +RL+    E A  L++ + + + PL  ++ 
Sbjct: 479  TGRPDIASLPDLFETRLTGFDEGSRPPFWVARLTVRAIESARDLLERLNRALAPLAAFRG 538

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
               +      ++   + +V  L+ +       L  L+  + G+ L+ L   ++   + + 
Sbjct: 539  QATA-----DLAALVEASVVALEVLGRAADGGLGELYAGDAGEKLAELLRGLVAAPATLS 593

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              A EW D++  LI  ETVKP       + I G LE+RL + DTL++GGLNEGVWP+   
Sbjct: 594  FAANEWPDVMDALIAPETVKPAQGTDRNIAIWGALEARLQDVDTLVIGGLNEGVWPRKPE 653

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             + F+SR+M++ ++L+  E+ IG AAHDF+MA G   ++  RS R  + P + SRWLQRL
Sbjct: 654  SDRFMSRLMKTGIDLEPPERRIGLAAHDFQMAMGAGKVLLARSARSGDAPAVPSRWLQRL 713

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            L   G D    L++RG   L W R LD   KQ    RP+P PPL  +P  +S +EI+ L 
Sbjct: 714  LTFIGNDQAATLRRRGDELLAWARALDTGPKQDFAPRPQPKPPLSVRPTHFSVTEIETLR 773

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
             DPYAVYARRIL L  +    +DP   +RGTLFH I+        +   P+    +    
Sbjct: 774  RDPYAVYARRILGLMPLEPLIRDPGAAERGTLFHAILHLFSSSVADPRAPDALAGLIAAG 833

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
             + F +  LPP ++ +W   F K++ + +E E     + I +       K  +   G+ L
Sbjct: 834  RACFAEAALPPDVEAVWWPRFEKLAANIVEWERTRADAVIRRHAEERAGKTVVGQSGVTL 893

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
            +G+ADR+DLL  G  DI DYKTG +P K  A  L+ PQL+LE A L+ G+F  +   + +
Sbjct: 894  SGYADRVDLLAGGMADILDYKTGSSPSKAQAHTLLAPQLALEGALLRRGAFKDLGACEPS 953

Query: 959  NLFYIRLKQKFKIDC---ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015
             L +IRLK   ++     + ++++  +A +L+E++   L +++    + +  ++S     
Sbjct: 954  QLAFIRLKPNGEVFEESILEHNRQPRTASDLAEEAWARLEKLLIHYADPKTGYLSRALPF 1013

Query: 1016 EKSNIQSEYDHLARVAEWR 1034
             +     +YDHLARV EW 
Sbjct: 1014 REGETDGDYDHLARVLEWS 1032


>gi|254464697|ref|ZP_05078108.1| double-strand break repair protein AddB [Rhodobacterales bacterium
            Y4I]
 gi|206685605|gb|EDZ46087.1| double-strand break repair protein AddB [Rhodobacterales bacterium
            Y4I]
          Length = 977

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 269/1045 (25%), Positives = 438/1045 (41%), Gaps = 89/1045 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             + KP +F +   + F R ++  L         R   L P  LA   + V T R  + +R
Sbjct: 5    PSVKPRLFAVPCGADFPRALVEGL-------RSRSQGLPPEALARAELIVNTSRMARRVR 57

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
            S F       + +LP +  L D+ +            L P +  ++R LEL++LI    +
Sbjct: 58   SLF---DTGPAMLLPRMMLLTDLAQRATL------DGLPPALPPLRRRLELSQLIAKLLD 108

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              PD               S A+   L+ +LA +ID ++ E    + + AL        W
Sbjct: 109  AQPD-------------LASRASLYDLSDSLAALIDEMQGEGVSTDTIRALDVSDMSGHW 155

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A  F+ IA ++    L E    +    +  ++    +   K  + P+I+AGSTGS   
Sbjct: 156  ARAQAFIGIADEF--TGLHEGAMDAQARQRQVVLNLIEQWQDKPPQHPVILAGSTGSRGT 213

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  LM  +A  P GA+VLPG D   P  +W  + +   +          HPQY   KL+ 
Sbjct: 214  TLMLMQAIARLPQGAVVLPGFDFDQPGHVWAGLDDPMIS--------EDHPQYRFHKLMK 265

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L++   DV+   +       R+ ++S +  P   +D   ++     +  + K   ++ L
Sbjct: 266  DLELTPGDVQPWTDTLPASPERNRLVSLALRPAPVTDAWMSE--GPLLTGLSKATENLTL 323

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            IEA + R EA++IA+ LR + ++  + +ALIT DR L R+V   L R+ I  D SAG PL
Sbjct: 324  IEAPSPRAEALAIALRLRQAAED-GQTAALITPDRMLTRQVSAALDRWDILPDDSAGQPL 382

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  +     K     ++ TL+KHPL   G       R    LEL   R    
Sbjct: 383  QLSPPGRFLRHVAGLFCKPLACDSLLTLLKHPLTHDGADRGNHLRQTRELELSLRRNGPP 442

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              D     +    R                               +    T  ++     
Sbjct: 443  FPDATAFAAFEKGRE------------------------------LTPGWTGWLSACFAD 472

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP-NLWFEEEGKTLSSLFSKI-IETGSCIK 599
                  L ++DW        + +           LW ++ G+   +    +  E      
Sbjct: 473  QEIAETLPLTDWVNRLRDLAERIAAGSQADGSGTLWDKKAGQAALACIENLETEAPYGGG 532

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              A ++ D++  L+    V+ +     ++ I GTLE+R+   D +ILGGLNEG WP+  +
Sbjct: 533  MTARDFADLLGALLSQGEVRDRDAPYGSIMIWGTLEARVQGADLVILGGLNEGSWPEAAS 592

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R +++   L   E+ IG +AHDF+ A     +  T + R     T+ SRWL RL
Sbjct: 593  PDPWLNRQLRNQAGLLLPERRIGLSAHDFQQAIAAPEVWLTHAERSEEADTVPSRWLNRL 652

Query: 720  LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              L       GG    D ++ +G+ +L W   L+  T  P Y RP P PP+ A+PR  + 
Sbjct: 653  TNLLSGLPEQGGRAALDTMRSKGRRWLGWAEALEEPTPIPQYPRPSPCPPVAARPRRLTI 712

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +EI +LI DPYA+YA+ +L+L  +    ++PD   RG + H +    IK      +    
Sbjct: 713  TEIPRLIRDPYAIYAKHVLRLKPLSPLVQEPDALLRGIVVHEVFEHFIKDAQTDPSLLTA 772

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
              +        E     P   I+W     KI+  F+  E++ Q+    +         ++
Sbjct: 773  GHLIGKTRELLETHVPWPVARILWHSRIRKIAGDFVLAEQERQARARPVAFEAKGSARLD 832

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             +   +   ADRID+   GF+ + DYKTG  P +   QK  + QL +EAA  + G+F  +
Sbjct: 833  PLDFTIACRADRIDMDDRGFLHLYDYKTGTPPSEAQ-QKKFEKQLLIEAAMAEEGAFDDL 891

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
               +VA   +I L  K       ++       E   K    L  ++       Q + S  
Sbjct: 892  GPAEVARALFIGLGSK------LSEVAAPLQAEPPAKVWDELRTLIAAYFEPNQGYSSR- 944

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037
            R+  + +I  +YDHLAR  EW    
Sbjct: 945  RMVHRDDIAGDYDHLARYGEWDRSA 969


>gi|85714149|ref|ZP_01045138.1| hypothetical protein NB311A_08333 [Nitrobacter sp. Nb-311A]
 gi|85699275|gb|EAQ37143.1| hypothetical protein NB311A_08333 [Nitrobacter sp. Nb-311A]
          Length = 1059

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 313/1057 (29%), Positives = 482/1057 (45%), Gaps = 42/1057 (3%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             V  +  S PF R +I AL++G L+E FR     P  LA VT+Y+PT+RA +  R  F++
Sbjct: 13   RVRNVPTSVPFLRTVITALVDGALIEGFRPR-AQPERLAEVTLYLPTRRAGRMARDIFLD 71

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTAD-----LLLSYNLNPPVSNIQRLLELARLILIWRN 121
            +    + ILP I +LG + E++            +  L P +  + R L LARLI  W  
Sbjct: 72   VLDNDAVILPRIVALGGIDEDELAFAQAVSLSPEALELPPALEGLARRLALARLIDAWAR 131

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            +L        P     +   PA+ + LA++LA ++D + T    W  L  L  E    +W
Sbjct: 132  RLKPGEPSQAP----LVLGGPASTLALAEDLARLMDDMATRGVDWRALDGLVPEALDRYW 187

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
             L  DFLKIA  +W   L E     P   +  L+ AEA  L+    GP+I AGSTGS+P+
Sbjct: 188  QLTLDFLKIARDHWPIHLQETGRVEPGVRRDRLIEAEAARLVTHA-GPVIAAGSTGSMPS 246

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT-EKSTNITSSNTTYSTHPQYSLAKLL 300
            TA+L+  +A  P GA+VLPGLD  +    W  I   K  +        + HPQ++L  LL
Sbjct: 247  TAKLLHVIATLPQGAVVLPGLDTDLDEDAWQLIGGHKDKSGAFITLPAAGHPQFALHGLL 306

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN-IQKCFSDV 359
                I R +VK LG      YGR ++ S++  P + +   +T + + ++   I     ++
Sbjct: 307  TRFGITRREVKPLGA--PAPYGRELLASEAMRPSEATAQWHTRLAKPEVAEKIAAGLQNL 364

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            A+I A N   EA+ IA+A+R + + N K +AL+T DR LARRV   L R+ ++ D S G 
Sbjct: 365  AVIAAANPEIEALGIAVAMREARELN-KTAALVTFDRALARRVMAALGRWNLSFDDSGGD 423

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            PL  T                 +  A+  L+KHPL + G      SRA   LEL  LRG 
Sbjct: 424  PLMDTPAGIFARLAAETACNGLEPPALLALLKHPLCRLGRAAGGWSRAVATLELAVLRGT 483

Query: 480  KNSYDIMDLKSLVLD-------RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
            +       L                 + ++ H    ++ L     + A  L+  +   + 
Sbjct: 484  RPPPGSKGLADEFARFCGERDKLDRGENSSLHRSEPRAALKPHHLDEARHLIAALRDALA 543

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
            PL       +    +   S         +  +  D+       +  + G+ L+  F  + 
Sbjct: 544  PLE-----GDGASRSADFSVLAAQHRQTIDALSHDDEGVAVA-FDGQHGRALADAFDDLR 597

Query: 593  ETG--SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            ETG  S +     ++ D          V+     +++L I G LE+RL   D +ILGGLN
Sbjct: 598  ETGERSGLTVRIADYPDTFEAAFGDRVVRRPQTTTASLRIYGPLEARLTQCDRVILGGLN 657

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
            EGVWP     +P+LSR M+ DL L   E+ IG +AHDF    G   +I + + +    P 
Sbjct: 658  EGVWPPAPPTDPWLSRPMRHDLGLDLPERRIGLSAHDFTQLLGAEDVILSHAAKAGGSPA 717

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
            +ASR+L RL  + G   +    + G  Y+ +   LD   +     +P+P PP  A+P   
Sbjct: 718  VASRFLHRLEAVAGATRWTAAIQAGARYIRYAEALDRPDQVTPVTKPEPKPPRAARPAHL 777

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S + I+  + DPY +YA+ ILKL  +          DRG+  H+ + +  K        +
Sbjct: 778  SVTAIEDWLRDPYTIYAKYILKLLPLDAVDMPLSAADRGSAIHDALGDFTKLYPANLPDD 837

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
               +M+ I + HF      P    +W   F +I+  F E E   ++ + +I   +  K+ 
Sbjct: 838  PEDVMRAIGERHFAPLMQRPEARALWWPRFQRIAAWFAEWERTRRAHLVRIDAEVSGKIE 897

Query: 891  IESIG---IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            I   G     L+  ADRI+ L  G   I DYKTG  P  +  +  + PQL+LE+A L+ G
Sbjct: 898  IPIDGDRKFMLSARADRIEHLGGGRFAILDYKTGRPPSSKQVRIGLSPQLTLESAILRKG 957

Query: 948  SFSQIDC-RKVANLFYIRLKQKFKIDCI------TNDKKKYSADELSEKSLKNLIEIVTL 1000
             F+ I     V  L Y+RL    +               K S DE ++++L+ L  ++  
Sbjct: 958  GFAGIPAGASVNELVYVRLSGNSQPGEACLVNLNNGKTDKQSPDEAADRALEELTALIRA 1017

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
              + +Q + S L L         YD LAR+ EW    
Sbjct: 1018 FDDEQQGYPS-LDLPMWKTRYGVYDDLARIKEWSAAG 1053


>gi|254462109|ref|ZP_05075525.1| double-strand break repair protein AddB [Rhodobacterales bacterium
            HTCC2083]
 gi|206678698|gb|EDZ43185.1| double-strand break repair protein AddB [Rhodobacteraceae bacterium
            HTCC2083]
          Length = 980

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 256/1045 (24%), Positives = 432/1045 (41%), Gaps = 86/1045 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
              + P +F +     F + ++  +L+       R     P  +A + I V T R  + + 
Sbjct: 4    AQETPRIFALGLGVDFPKALVKGVLD-------RTQNNAPTDIAQIQIIVNTARMRRRVS 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
            + FI     K+ +LP I  LG++ +            +   +S + R +E+  L+     
Sbjct: 57   TLFI---DGKAKLLPQITLLGNIGKHPKFHA------IPQAISPLSRRIEIIALVDALLR 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            + P                S ++   LA +LA ++D ++ E    ED+  L+       W
Sbjct: 108  RNP-------------ALASRSSLFDLADSLAGLMDEMQGEGVPLEDISNLEVTDISGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A +F+ I  ++    L ++   +    +  ++   A+  +     P+I+AGSTGS   
Sbjct: 155  ARAQEFISIVGRFLD--LSQVRPDNEARARAVVLAQIADWQINPPTHPVILAGSTGSRGT 212

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            TA LM  ++  P GA++LPG D   P  +W    E+      +      HPQY  A LL 
Sbjct: 213  TALLMEAISKLPQGAVILPGFDTDTPPEVW----EELIADHPTRMDPEDHPQYRFANLLK 268

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L +  + V    +       R+ V+S +  P   +D    D     + ++      V L
Sbjct: 269  SLSMHPKTVPLWHDTPPVDTARNKVVSLALRPVPVTDGWLRD--GPNLGDLPSAMQHVTL 326

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +E    REEA++IA+ LR + ++  K +ALIT DR L R+V   L R+ I  D SAG+PL
Sbjct: 327  LEPQTSREEALAIAMRLRFAAEQ-GKTAALITPDRMLTRQVTAALDRWDIKPDDSAGLPL 385

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  +L    +  D  A+ TL+KHPL   G            LEL   +    
Sbjct: 386  QLSPPGRFLRHVLELFTRPLDAEALLTLLKHPLTHTGSERGTHLLLTRELELSIRKNGPA 445

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                  L +                       +   + A   +D +              
Sbjct: 446  FPTKDSLLAWA--------------------KDNKLDGAKSWIDWVANTFCG-------- 477

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRK-LPNLWFEEEGKTLSSLFSKIIETGSCIK- 599
            +   G  +  +  +  +   + +          +LW E  G+   S +  +      +  
Sbjct: 478  HLCDGPQNAVELAERHIGLAERISQGAQDVGTGDLWKEGAGREAMSQWVALRSNLDALPD 537

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +  ++ D+   ++    V+        + I GTLE+R+   D LIL GLNEG WP+  +
Sbjct: 538  LSTRDYADLFGGVLSRGEVRNPDAGHPNVLIWGTLEARVQGADLLILAGLNEGSWPEAPS 597

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R M++D  L   E+ IG +AHDF+ A     +  TR+ R ++  T+ SRWL RL
Sbjct: 598  PDPWLNRRMRADAGLLLPERRIGLSAHDFQQAIAAPEVWLTRAQRSDDAQTVPSRWLNRL 657

Query: 720  LVLG-------GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              L        G    + ++ RG  +L+   +L+        KRP P P +E +P   S 
Sbjct: 658  TNLMNGLPDQDGPVTIEQMQTRGNDWLERAHQLETPIGANPAKRPSPKPAIEVRPNQLSV 717

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +EIK L+ DPY +YA+ +L+L  +    K  D   RG   H +  + ++     +  E  
Sbjct: 718  TEIKTLVRDPYEIYAKHVLRLAPLDSLVKTADARLRGIAVHQVFEDFVRSW---DKGETA 774

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
              +       F+ +   P   ++W     +++  F+  E + Q       + +  +  + 
Sbjct: 775  ADLMAHAKRIFDSDVDWPSARLMWAARIARLADDFVAEERERQKIAMSSRLEVKGESTLP 834

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             +G  LT  ADRIDL + G   + DYKTG  P K   Q   D QL LEAA  + G F  +
Sbjct: 835  ELGFTLTVKADRIDLDERGGAYLYDYKTGAIPSKPQ-QLAFDMQLLLEAAMAERGDFDSL 893

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
              R +    Y+ +    K      D K       + +    L ++++  Q   + F +  
Sbjct: 894  HPRHIEGATYLGVGSGTKSVEAPLDDKP------TAQVWAELYKLISDYQVSNKGFTAR- 946

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037
            R  EKS     YD L+R  EW E  
Sbjct: 947  RAMEKSKGFGRYDQLSRFGEWDETD 971


>gi|255262129|ref|ZP_05341471.1| double-strand break repair protein AddB [Thalassiobium sp. R2A62]
 gi|255104464|gb|EET47138.1| double-strand break repair protein AddB [Thalassiobium sp. R2A62]
          Length = 978

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 272/1049 (25%), Positives = 465/1049 (44%), Gaps = 92/1049 (8%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
              + +VF I     F + ++  L+             +   L+ V +YV T+R  + +R 
Sbjct: 2    TPRSHVFGIPCGVDFTQHLVDGLIER----------FDQDELSHVEVYVNTRRMQRRMRE 51

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
             F       + +LP IK + D+  +       ++ ++   VS ++R LE++ L+    + 
Sbjct: 52   IF---DLGPARLLPQIKLVTDLARD------PVALDVPAAVSPLRRRLEISTLVSQLVDA 102

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
             PDI                ++   L+ +LA++++ ++ E    E + AL        W 
Sbjct: 103  QPDIAAR-------------SSIFDLSDSLANLMEEMQGEGVDPETVAALDVSDQSGHWE 149

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIPA 241
             A  F +I  +Y+ +             Q  ++    +         PI++AGSTGS  A
Sbjct: 150  RALSFFQIVQRYFGDTYEPP---DGEARQRLVVDRLVDQWAASPPNSPIVVAGSTGSRGA 206

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T   M+ VA  P+G +VLPG D H+P  IW  + +  T+          HPQY  A+LL 
Sbjct: 207  TFDFMTAVAQLPHGMLVLPGFDAHLPDPIWRRLKDALTS--------EDHPQYRFARLLQ 258

Query: 302  FLDIKREDVKRLGNVSNEMY-GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
             L+I    V      S   +  R+ ++S S  P   +D    +    +  ++++  + + 
Sbjct: 259  RLEIDPSAVDDWSVHSQRPHSDRNRLVSLSLRPAPVTDQWRIE--GREFEDLREVTAPLT 316

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            LIEA   REEA++IA+ L+ + ++ ++K+ALIT DR L R+V   L ++ I  D SAG+P
Sbjct: 317  LIEAFTPREEALAIALRLKKAAND-RQKAALITPDRMLGRQVTAALQQWDITPDDSAGLP 375

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGN 479
            L  T    +L  + + + +      + TL+KHPL   G             LEL   R  
Sbjct: 376  LQLTAPGRLLRHVASVLSRDMTSEILLTLLKHPLVHTGDPARGAHLLWTRELELYIRRNG 435

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                D   L+                    +R +++ +      +  ++  I    ++ T
Sbjct: 436  LPFPDAETLRQW----------------AHARDTDDGRVAWSEWIATVISSIEDTPSHTT 479

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS-CI 598
             +     +LS+++                 +    LW ++ G   + +     E  +   
Sbjct: 480  LEQHYLTHLSLTEALA---------TGPNGQDTGELWLKDAGIEAAKICEMFSEHVAYSD 530

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
               A ++ D+   ++ G TV+  ++ +  + ILGTLE+R+ + D +ILGGLN+GVWP+  
Sbjct: 531  AMTAGDYADLFGSVLSGGTVRSSVKSNPLIRILGTLEARVNDADLVILGGLNDGVWPERP 590

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
              +P+L+R M+    L   E+ IG +AHD++ A G   +  TRS+R ++  T+ SRW+ R
Sbjct: 591  TPDPWLNRTMRDKAGLLLPERRIGLSAHDYQQAIGASEVWLTRSVRSDDSETVPSRWVNR 650

Query: 719  LLVLGGT-------DFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRTY 770
            L+ L G        D    +  RG  ++++ R +D   T     +RP P PP+ A+P   
Sbjct: 651  LVNLLGGLPDQYGLDALKAMIARGDTWINYARAMDQPNTVTKPAQRPSPCPPISARPVQL 710

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S + IK LI DPYAVYA ++L L  +      PD   RGT  H+I    I++R  +   E
Sbjct: 711  SVTRIKTLIRDPYAVYAEKVLGLRPLNPLTPSPDAPLRGTTMHSIFERFIRERGPETLEE 770

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                +  I  +  + +   P I  +W     +I+  FL  E K  S    +         
Sbjct: 771  ARTRLMTIARTVMDADTPWPTIREMWMARLDRIADQFLADEAKRVSIATPVLFEKQGGTR 830

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            I+ +G  LT  ADR+D   +  + I DYKTG  P  +  Q   D QL LEAA ++ G F+
Sbjct: 831  IDHLGFTLTARADRMDQDDAQNIYIYDYKTGAAPT-KEQQTYFDKQLLLEAAMVERGGFA 889

Query: 951  Q-IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
            + +    V    YI L    K+     +      D  +       + ++T   + ++ + 
Sbjct: 890  EWVGTSSVVQASYIGLGSDPKVTRAPLE------DNPTNAVWAEFVTLMTAWAHVDRGYT 943

Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
            +  R  E+    S+YDHL+R  EW    D
Sbjct: 944  AR-RAMEQDRFGSDYDHLSRFGEWDLTQD 971


>gi|254451971|ref|ZP_05065408.1| double-strand break repair protein AddB [Octadecabacter antarcticus
            238]
 gi|198266377|gb|EDY90647.1| double-strand break repair protein AddB [Octadecabacter antarcticus
            238]
          Length = 981

 Score =  599 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 262/1049 (24%), Positives = 446/1049 (42%), Gaps = 91/1049 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
              K P V+ +   + F   +   L          ++ ++P  +A V IYV T+R  + L 
Sbjct: 5    PMKIPRVYGVPLGADFSTTLYDGL-------RAAFETMSPADVAHVVIYVNTRRMQRRLT 57

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
            S F +     + +LP I+ + D+ ++     +       P ++ ++R LE+A+L+    +
Sbjct: 58   SLFHQ---GDALLLPRIRLVTDLAQDAVGRAIA------PSIAPLRRRLEVAQLVKGLID 108

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              P                S   AI LA +L  ++  ++ E    E +  L        W
Sbjct: 109  ADP-------------TLASQDAAIDLADSLVALMSEMQGEGVAPEAIAGLDVTDQSGHW 155

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIP 240
              A  F+++  +++       +     G Q  ++    +         PII+AGSTGS  
Sbjct: 156  QRALSFIQLVQQFF-----ADDRLDGEGRQRLVIETLVDRWADTPPDHPIIVAGSTGSRG 210

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
            AT+  M  VA  P GA++LPGLDC +P  +W+ + +K             HPQY      
Sbjct: 211  ATSLFMQAVAKLPQGAVILPGLDCDMPAHVWDMMEQKKGG--------EDHPQYRFKAFC 262

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
            D L I+  D+++ GN +N    R+ +IS S  P   +     D   + + ++ +  + + 
Sbjct: 263  DALSIQPSDIQQWGNTTNINAARTGLISLSLRPAPVTHQWIKD--GSDLGDLGEATNGIT 320

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            LIEA   R +A +IA  LR ++++  + +ALI+ DR L R+V   L R+ I  D SAG+P
Sbjct: 321  LIEAPTPRAQADAIAARLRQAVED-GQTAALISPDRMLTRQVTASLDRWDITPDDSAGLP 379

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGN 479
            L  T     L  + +   +  D   +  L++HPL+          +   NALEL   R  
Sbjct: 380  LQLTAPGRFLRHIADLFCEPLDAERLLVLLRHPLSHSDRPDRGAHALRTNALELDLRRNG 439

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                    L             +T    W   +     +                     
Sbjct: 440  PPFPTAESLTKWAAATSDRHPEHTDWVAWVGSVLLGLCD--------------------- 478

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDE-HRKLPNLWFEEEGKTLSSLFSKIIET-GSC 597
                   +  + D     +   + +           LW +  G+    + S++     + 
Sbjct: 479  -----TNDKPLIDHLTHHLGIAERLSAGPYLGGSGELWKKPAGREALRVMSELRAHSDAG 533

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
               +A E+  +I  ++ G  V+ + +    + I GTLE+R+ + D +IL GLNEG WP+ 
Sbjct: 534  GVMSAREYRRLIGSVLAGGEVRDRDDGHPQVLIWGTLEARVQSADLVILAGLNEGTWPEA 593

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
               +P+L+R ++    L   E+ IG +AHD++ A   R ++ +R++R +   T+ SRW+ 
Sbjct: 594  PTPDPWLNRPLRMQAGLLLPERRIGLSAHDYQQAVCAREVVLSRAVRSDEAETVPSRWIN 653

Query: 718  RLLVL-------GGTDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRT 769
            RL  L       GG  +   +++RGQ +L     +           RP P PP +A+P  
Sbjct: 654  RLTNLLGGLEDKGGPAYLKAMRERGQHWLTLAANIAAPTVTVDPAPRPSPCPPADARPDK 713

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S ++IK LI DPYA+YAR+IL L+ +      PD   RGT+ H ++   +K +I+    
Sbjct: 714  LSVTQIKTLIRDPYAIYARKILGLNALDSLAHTPDAPLRGTIVHKVLERFVKDKIDPADS 773

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
                 +  I      +    P +  +W       +  FL  E+K +     +   +  ++
Sbjct: 774  GARAALLSIASDVLIEHCPWPAVRALWFARIASFTPHFLIEEQKRRVFSANVDTEMRGEL 833

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
             +  +   LTG ADRID+   G   I DYKT   P     QK  D QL LEAA ++ G+F
Sbjct: 834  KLAYLPFTLTGTADRIDMSDDGEALIYDYKTSKAPTSPQ-QKYFDKQLLLEAAMVERGAF 892

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
              +   +     YI L    K      D      DE  +++      ++    +  + + 
Sbjct: 893  KALGRVRTKAAVYIGLGSDLKDQPAPLD------DETPDETWTRFEGLIAKWMDPTKGYT 946

Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
            S    +E  + +  YDHLAR  EW E +D
Sbjct: 947  SR-SANEIMSFEGNYDHLARYGEWDETHD 974


>gi|92115689|ref|YP_575418.1| hypothetical protein Nham_0057 [Nitrobacter hamburgensis X14]
 gi|91798583|gb|ABE60958.1| DNA helicase/exodeoxyribonuclease V, subunit B [Nitrobacter
            hamburgensis X14]
          Length = 1049

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 302/1055 (28%), Positives = 475/1055 (45%), Gaps = 38/1055 (3%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             V  +  S PF R +I AL++G L+E FR     P  LA  T+Y+PT+RA +  R  F++
Sbjct: 2    RVRNVPTSVPFLRTVITALVDGALIEGFRPR-AQPERLAEATLYLPTRRAGRMARDIFLD 60

Query: 67   ITGKKSTILPIIKSLGDVVEEKFT----ADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
            +    + ILP I +LGD+ E++      A    +  L P +  + R L LA+LI  W  +
Sbjct: 61   VLNVDAVILPRIVALGDIDEDELAFAQAASSAEALQLPPALDGLARRLALAQLIEAWARQ 120

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            L        P     +   PA+ + LA +LA ++D + T    W  L AL  +    +W 
Sbjct: 121  LKPGDPAQAP----LVLGGPASTLALADDLARLMDDMATRGVDWRALDALVPDALDKYWQ 176

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
            L  DFLKIA  YW   L E     P   +  L+ AEA  L     GP+I AGSTGS+P+T
Sbjct: 177  LTLDFLKIARDYWPAHLEEAGRIEPAVRRDRLIDAEAARLAAHHGGPVIAAGSTGSMPST 236

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN-ITSSNTTYSTHPQYSLAKLLD 301
            A+L+  +A  P+GA+VLPGLD  +    W  I          +    + HPQ++L  LL 
Sbjct: 237  AKLLHVIARLPHGAVVLPGLDTDLDDEAWQLIGGMRDGNGAFTAPPAAGHPQFALHGLLR 296

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN-IQKCFSDVA 360
               I R DV+ LG      YGR M+ S++  P + +   +T + E ++   I     ++A
Sbjct: 297  RFGIARRDVETLGV--PAPYGREMLTSEAMRPSEATARWHTRLAEPEVAEKIAAGMKNLA 354

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            +I A N   EA+SIA A+R + + N K +AL+T DR LARRV   L R+ +  D S G  
Sbjct: 355  VIAAANPEVEALSIAAAMREARELN-KTAALVTFDRALARRVMAALGRWNLAFDDSGGDA 413

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L  T        +        +   +  L+KHPL + G      SRA   LEL  LRG +
Sbjct: 414  LMDTPAGIFARLVAGTACNGLEPPTLLALLKHPLCRLGRVAGGWSRAVATLELAILRGTR 473

Query: 481  NSYDIMDLKSL-------VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                   L          +      + ++ H    ++ L     + +  L+  +   + P
Sbjct: 474  PPPGSKGLADEFARFCGELDKLDRGESSSLHRTEPRAALKLHRLDESRALIAALRDALAP 533

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS-KII 592
            L       +    +   + +       +  +  D+         +      ++    +  
Sbjct: 534  LE-----GDGASRSADFTAFAAQHREAIDVLSRDDQGVAAAFEGQHGLALAAAFDDLRKA 588

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
               S +     ++ ++         V+     +++L I G LE+RL   D +ILGGLNE 
Sbjct: 589  GERSGLTVKIADYPEVFETAFGDRIVRRPQATAASLRIYGPLEARLTQCDRVILGGLNES 648

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
            VWP     +P+LSR M+ +L L   E+ IG +AHDF    G   +I + + +    P +A
Sbjct: 649  VWPPAPPSDPWLSRPMRHELGLDLPERRIGLSAHDFAQLLGADDVILSHAAKAGGSPAVA 708

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
            SR+L RL  + G + +    + G  Y+ +   +D   +     +P+P PP  A+P   S 
Sbjct: 709  SRFLHRLKAVAGPERWATALQAGTRYVQYAEAIDRPEQVTPVAQPEPKPPRAARPTRLSV 768

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            + I+  + DPY +YA+ ILKL  +          DRG+  HN + +  K+          
Sbjct: 769  TAIEDWLRDPYTIYAKHILKLLPLEAVDMPLSAADRGSAIHNSLGDFTKQYPAALPENPA 828

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
             +++ I +S F      P    +W   F +I+  F E E+  +  +E I   I  +++I 
Sbjct: 829  DVLRAIGESRFAPLMQRPEARALWWPRFQRIAAWFAEWEQSRRPQLETIDAEIRGEISIP 888

Query: 893  ---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
                   HL+  ADRI+ L  G   I DYKTG  P  +  +  + PQL+LE+A L+ G F
Sbjct: 889  VASDRTFHLSARADRIEHLGDGRFTILDYKTGSPPSSKQVRLGLSPQLTLESAILREGGF 948

Query: 950  SQIDC-RKVANLFYIRLKQKFKIDCIT------NDKKKYSADELSEKSLKNLIEIVTLLQ 1002
              I     V+ L Y+RL                      S D+ ++++L+ L  ++    
Sbjct: 949  EGIPAGASVSELVYVRLSGNNPPGEPLQVNLDNGKTDMQSPDQAADRALEELNALIRAFD 1008

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            N +Q + S L L         YD LAR+ EW    
Sbjct: 1009 NEQQGYPS-LDLPMWKTRYGAYDDLARIKEWSAAG 1042


>gi|260431945|ref|ZP_05785916.1| double-strand break repair protein AddB [Silicibacter
            lacuscaerulensis ITI-1157]
 gi|260415773|gb|EEX09032.1| double-strand break repair protein AddB [Silicibacter
            lacuscaerulensis ITI-1157]
          Length = 975

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 277/1046 (26%), Positives = 443/1046 (42%), Gaps = 90/1046 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P VF + P + F + ++  L         R D   P  LA V + + T+R  + +R
Sbjct: 4    PGATPRVFAVPPGADFPQALVRGL-------RARSDGHPPEALARVQLVLNTRRMARRVR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              F +       +LP I  + D+ E            + P V  ++R LEL +L+    +
Sbjct: 57   ELFDQ---GPPCLLPRISLVTDLGESV------DLDQVPPAVPPLRRRLELTQLVARLLD 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            + PD+                ++   L+ +LA +I+ ++ E    E +  L        W
Sbjct: 108  QQPDLAAR-------------SSLFGLSDSLAALIEEMQGEGVPPEAIRQLDVTDLSGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIP 240
              A  F+ IA ++      E  +      Q  ++            + P+I+AGSTGS  
Sbjct: 155  ARAQAFIGIADQFLK---TEDGSLDVQARQRRVVENLIARWQDAPPQHPVILAGSTGSRG 211

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
             T  LM  VA  P GA++LPG D   P  +W  +    T+          HPQY   KL+
Sbjct: 212  TTLMLMQAVARLPQGALILPGYDFDQPAHVWERLDSAMTS--------EDHPQYRFRKLM 263

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
              L I +  +            R+ ++S +  P   +D   ++    ++ ++     D+ 
Sbjct: 264  TELGIGQAQIAAWTPDQPPSPARNRLVSLALRPAPITDAWMSE--GPQLRDLDAATRDIT 321

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            L+EA + R EA++IA+ LR + +   + +ALIT DR L R+V   L R+ I  D SAG+P
Sbjct: 322  LVEAQSPRAEALAIALRLRQAAE-TGQTAALITPDRMLTRQVSAALDRWNILPDDSAGLP 380

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L  +     L  +        D  A+ TL+KHPL                LEL   R   
Sbjct: 381  LQLSPPGRFLRHVAGLFAHRLDAEALLTLLKHPLCHSAGDRGAHLLHSRDLELHLRRNGP 440

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
               D   L                    +       + L     D               
Sbjct: 441  PFPDSASLSGFA--------------VEKDVPDTWARWLIRNFCDR-------------- 472

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIK 599
                 G L ++DW +      + +          LW +  G+   ++ S +  E     +
Sbjct: 473  --QISGTLPLTDWVQRLRDLAEAIAGAGTGDAGELWDKNAGQAALAVISDLADEAEHGGE 530

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              A+++ D++  L+ G+ V+ +      + I GTLE+R+   D LILGGLNEG WP+  A
Sbjct: 531  MTALDFADLLGALLAGQEVRDRDAPHPRIMIWGTLEARVQGADLLILGGLNEGSWPEAPA 590

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R M+    L   E+ IG +AHDF+ A G   +  TR++R ++  T+ SRWL RL
Sbjct: 591  PDPWLNRQMRDRAGLLLPERRIGLSAHDFQQAIGAPEVWLTRAVRSDDAETVPSRWLNRL 650

Query: 720  LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              L       GG    + ++ RG+ +L W+  L+   +     RP P PP+ A+PR  S 
Sbjct: 651  TNLLQGLPDQGGRAALEQMRDRGKTWLRWSEMLEQAPRIAAAPRPSPRPPVAARPRRLSV 710

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +EIK+LI DPYA+YA+ IL+L  +    + PD   RG + H I+   +K  +        
Sbjct: 711  TEIKKLIRDPYAIYAKHILRLKPLDPLVQAPDALLRGIVIHEILEHFVKDSVLDGALLTR 770

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                +  ++  ++    P    +W     +I+  FL  E   +S    I      ++ +E
Sbjct: 771  DNFLKRAEALLDQHVAWPTARKLWLARLERIADDFLRAEITRRSDGGPIAFEAKMRLTLE 830

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             +G  L G ADRID    G + I DYKTG  P +   Q   D QL +EAA  + G     
Sbjct: 831  PLGFTLNGRADRIDRNSRGALTIIDYKTGAPPSESQ-QAKFDKQLLIEAAMAEQGGIDGF 889

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
            D   VA+  +I +   +K      DK+         K L  L E+++     +Q F S  
Sbjct: 890  DPMAVASAVFIGMGGTYKEVPAPLDKEPPD------KVLAELKELISAYLEPDQGFSSR- 942

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEYD 1038
            R+  K +   +YDHLAR  EW    +
Sbjct: 943  RMMHKDSDVGDYDHLARFGEWDRTAE 968


>gi|21328715|gb|AAM48721.1| conserved hypothetical protein [uncultured marine proteobacterium]
          Length = 972

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 258/1045 (24%), Positives = 426/1045 (40%), Gaps = 94/1045 (8%)

Query: 1    MHNKKP--NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQ 58
            M   +P   VF       F   ++  L         R     P   A V +YV T+R  +
Sbjct: 1    MFEDRPKFRVFGTYAGQAFPDTLLEGL-------TTRLQGAAPEDWARVEVYVNTRRMQR 53

Query: 59   ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118
             L   F++     + ++P    + ++  +          +L  PV  ++R LE+A+L+  
Sbjct: 54   RLAELFLQ---GPARLMPKFHLVTNLAHDPLLT------DLPMPVPTLKRRLEIAQLVRK 104

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
               ++  +                +    LA +LA ++D ++ E    + +  L    + 
Sbjct: 105  LIQRVEGLAP-------------ASAVFDLANSLAGLMDEMQGEGIAPDVIEGLDISDFS 151

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238
              W  A  F+ I  +Y+               + +++             PI++AGSTGS
Sbjct: 152  GHWERALQFISIVQRYFEGGEAPD---EEARQRASVLALTQRWQENPPDHPILVAGSTGS 208

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
               T  LM+ VA  P GA+VLPG D  +P  +W  +++  T+          HPQY  ++
Sbjct: 209  RGTTFHLMTAVAGLPQGAVVLPGFDFDMPRRVWAQLSDPKTS--------EDHPQYRFSR 260

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
            LL+ L++  + V        +   R+ ++S +  P   +     +     +  + +   D
Sbjct: 261  LLNALELTSDHVIPWTAAEPQAAARNRLVSLALRPAPVTHHWRQE--GPHLTELDQATQD 318

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
            +  +EA N+R EA +IA+ LR + +   + +A+IT DRNL RR+   L  + I  D SAG
Sbjct: 319  ITWLEAPNQRVEAKAIALRLRQAAEL-GQTAAVITPDRNLTRRISTALAAWNITPDDSAG 377

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
            IPL+ T     L  +L+          +  L+KHPL   G       R    LEL   R 
Sbjct: 378  IPLNLTAPGRFLLHVLDLAQSQLTSETLLVLLKHPLTHSGSERGQHLRNTRELELYLRRS 437

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                     L               H   W   ++    +                    
Sbjct: 438  GPAFLTAQALLQWAE-------KENHYRPWVDWINANVFD-------------------- 470

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI-IETGSC 597
                   G   +  W        + +      +   LW +  G+   +    +     + 
Sbjct: 471  ---QWPQGPQPLESWITHHRKLAEGLSAGLVGEDGELWEQAPGRDTKTEIENLTRYAPAA 527

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                 I++  I+  ++     + +    S + I GTLE+R+ + D +IL GLN+G WP+ 
Sbjct: 528  GDVELIDYTAILRGVLSAGQTRDQNHVHSNILIWGTLEARVQSADLVILAGLNDGTWPEP 587

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
             A +P+L+R ++    L   E+ IG +AHDF+ A G + +  TRSLR ++  T+ SRWL 
Sbjct: 588  PAPDPWLNRSLRLQAGLLLPERRIGLSAHDFQQAIGAKTVWLTRSLRSDDAETVPSRWLN 647

Query: 718  RLLVLGG-------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
            R+  L           + D+++ RG  +L     L+     P   RP   PP+ ++P   
Sbjct: 648  RIENLLNGLEKPDDASWMDHMRARGNEWLGKVEALEEPQVAPLSIRPSVAPPVASRPERL 707

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            + ++IK LI DPYA+YA+R+L L  +    K PD   RGTL H+++   +K     N   
Sbjct: 708  AVTDIKHLIRDPYAIYAKRVLNLRRLDPLSKSPDAPLRGTLIHDLLEAFLKTGPWTNAEA 767

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                +  + +  F+     P    +W     + +  F+ HE K Q+ I      I   + 
Sbjct: 768  AKATLLALAEERFQSTVPWPAARRMWLARVVRFAEWFVTHEMKRQARILSTKTEIEGDVN 827

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            +  +   L G ADRIDLL  G   I DYKTG  P     Q   D QL LE   L+ G F 
Sbjct: 828  LPELNFTLAGTADRIDLLNDGTAHIYDYKTGKPPSPAQ-QLHFDKQLLLEVEILRRGGFP 886

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
             +   KVA   YI L           D+              +  +++   Q+ EQ + +
Sbjct: 887  GLGPLKVAGATYIGLDNAPSELPAPIDET---------DVWSDFSKLIXAYQSPEQGYAA 937

Query: 1011 HLRLSEKSNIQSEYDHLARVAEWRE 1035
              R   K++  S+YDHLAR  EW  
Sbjct: 938  R-RAMLKADDASDYDHLARYGEWST 961


>gi|319780205|ref|YP_004139681.1| double-strand break repair protein AddB [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
 gi|317166093|gb|ADV09631.1| double-strand break repair protein AddB [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
          Length = 1044

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 369/1039 (35%), Positives = 570/1039 (54%), Gaps = 23/1039 (2%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR----S 62
             VF+I P +PF   +  ALL G LV  FR+D  +PL LA  TIYVPT+RA + LR     
Sbjct: 6    RVFSIPPGAPFLPTLAEALLAGRLVPGFRFDG-DPLALADATIYVPTRRAARALRGVFVD 64

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLS--YNLNPPVSNIQRLLELARLILIWR 120
                  G  S ILP+I+ LG+  E++   +   +   +L PP+S  +RLL L  L+  W+
Sbjct: 65   SLAARGGGGSAILPVIRPLGEFDEDEAAFETEAAAAIDLAPPISATERLLLLTPLVRAWK 124

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
             +LP  +  L+ E  + +P S A+AIWLA++LA ++D IETE   W  L  L       W
Sbjct: 125  RRLPAHVAALFAEE-IVIPASTADAIWLARDLARLMDEIETEGTDWAKLTDLVTGNLAGW 183

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
            W +  +FL I ++ W + L E + S+P  ++ AL+RAEA  L +    GP+I AGSTGSI
Sbjct: 184  WQVTLEFLGIVTEAWPKFLAESDRSNPAAHRSALIRAEAARLQRNPPAGPVIAAGSTGSI 243

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L++ +A  P GAIVLPGLD  +  A +  I                HPQY LA+L
Sbjct: 244  PATAELLAAIARLPGGAIVLPGLDRTLDEASFQAIAAPGA-----RPAVLGHPQYGLARL 298

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            +  + + R DV+ +G        R+ ++ ++  P +T+++           +I   F++V
Sbjct: 299  IGKIGVLRGDVEEIGVAEPRRALRAALVGEALRPAETTELWAETRAGFPASDIAGAFAEV 358

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
             L+EA +ER+EA++IA+AL+ ++++  +++AL+T DR LARRV +EL RFG+  D S G 
Sbjct: 359  TLLEAASERDEAVAIAVALKRAVEQPGQRAALVTGDRALARRVSIELQRFGVVADDSGGT 418

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            PL+ T  +S+L   L A+F+  D + + +L+KHPL   G     +  A   +ELVALRG 
Sbjct: 419  PLANTPAASLLRLALEALFRPGDPVGLLSLLKHPLLGLGLERADVRHAAELIELVALRGG 478

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                DI+ L  L   R+      +  P W SRL+    E A  L++ + Q + PL  ++ 
Sbjct: 479  TGRPDIVSLPELFEARLTGLGGGSRQPFWFSRLTVRSIETARNLLERLKQALAPLAAFRG 538

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              ++      ++   + +V  L+N+       L  L+  + G+ L+ L   ++   + + 
Sbjct: 539  RDDA-----DLAALVRASVVTLENLGRIADGGLGELYAGDAGEKLAELLRGLVAASASLS 593

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              A EW DI+  LI  ETVKP       + I G LE+RL   DTL++GGLNEGVWP+   
Sbjct: 594  FAATEWPDIMAALIAPETVKPAQGTDRNIAIWGALEARLQTVDTLVIGGLNEGVWPRKPE 653

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             + F+SR+M++ ++L+  E+ IG AAHDF+MA G   ++ +RS R  + P + SRWLQRL
Sbjct: 654  SDRFMSRLMKTGIDLEPPERRIGLAAHDFQMAMGAGKVVLSRSARAGDAPAVPSRWLQRL 713

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            L   G+D    L++RG   L W R LD   +Q    RP+P PPL  +P  +S +EI+ L 
Sbjct: 714  LTFIGSDQAAELRRRGDELLAWARALDAGPRQDFAPRPQPKPPLSVRPTHFSVTEIETLR 773

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
             DPYAVYARRIL L  +    +DP   +RGTLFH I+        +   P+    +    
Sbjct: 774  RDPYAVYARRILGLMPLDPVIRDPGAAERGTLFHAILHLFSGSVADPRAPDALAGLIAAG 833

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP-AKMAIESIGIHL 898
             + F +  LP  ++ +W   F K++ + +E E     ++ +        K  +   G+ L
Sbjct: 834  RACFAEAALPADVEAVWWPRFEKLAANIIEWERTRADAVTRRHAEERAGKTVVGQSGVTL 893

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
            +G+ADR+DLL  G  DI DYKTG +P K  A  L+ PQL+LE A L+ G+F  +  R+ +
Sbjct: 894  SGYADRVDLLAGGMADILDYKTGSSPSKAQAHTLLAPQLALEGALLRRGAFKDLGVREPS 953

Query: 959  NLFYIRLKQKFKIDC---ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015
             L +IRLK   ++     + ++++  +A +L+E++   L +++    +    ++S     
Sbjct: 954  QLAFIRLKPNGEVFEESILEHNRQPRTATDLAEEAWARLEKLLIHYADPATGYLSRALPF 1013

Query: 1016 EKSNIQSEYDHLARVAEWR 1034
             +     +YDHLARV EW 
Sbjct: 1014 REGETDGDYDHLARVLEWS 1032


>gi|39933155|ref|NP_945431.1| hypothetical protein RPA0075 [Rhodopseudomonas palustris CGA009]
 gi|39652780|emb|CAE25519.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 1049

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 307/1057 (29%), Positives = 493/1057 (46%), Gaps = 42/1057 (3%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
            ++F++  S+PF R  I AL++G LVE F      P  LA  T+Y+PT+RA +  R  F++
Sbjct: 2    HLFSVPSSAPFLRTTIAALVDGRLVEGFEAR-AAPERLADATLYLPTRRAGRMAREIFLD 60

Query: 67   ITGKKSTILPIIKSLGDVVEEKFT----ADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
            + G  + +LP I +LGD+ E++      A  L    + P +  + R L LA+LI  W  +
Sbjct: 61   VLGADAVLLPRIVALGDIDEDELAFAQAASGLADLEIPPALDGLPRRLLLAQLIASWAAR 120

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            L        P     +   PA+A+ LA +LA +ID + T    W  L  L  + +  +W 
Sbjct: 121  LKPDDPAQAP----LVVGGPASALALADDLARLIDDMSTRGVDWSALGTLVPDAFDRYWS 176

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
            L  DFLKIA   W + L E +   P   +  L+ AEA+ L     GP+I AGSTGS+PAT
Sbjct: 177  LTLDFLKIAGHAWPQYLKETDRIEPAARRDRLIDAEAQRLATQRSGPVIAAGSTGSMPAT 236

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAKLLD 301
            A+L++ +   P+GA+VLPGLD  +  A W+ I   +             HPQY++  LLD
Sbjct: 237  AKLLTAIVRLPHGAVVLPGLDIDLDNAAWDLIGGSRDRQGKLVTPPSPNHPQYAMHGLLD 296

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI-QKCFSDVA 360
             + + R DV++LG  +   +GR ++ S++  P   + + +  + + ++  +  +    + 
Sbjct: 297  RMGVTRRDVQQLG--TPARHGRELLSSEALRPSSATAVWHDRLKDAEVDRLIGEGTDGLT 354

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            LIEA N   EA++IA+ LR + ++  K +AL+T DR LARRV   L R+ + +D S G  
Sbjct: 355  LIEAPNSEAEALAIAVVLREAREQ-GKTAALVTPDRALARRVVAALGRWHLPVDDSGGDS 413

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L  T            + +  +   +  L+KHPL + G        A   LEL  LRG +
Sbjct: 414  LMETQPGIFARLAAETVLEGCEPTTLLALLKHPLLRLGRAGYGWRGAIETLELALLRGPR 473

Query: 481  NSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                   L       +  +      + +  H    ++RLSE   + A  L+  +   + P
Sbjct: 474  PPAGCDGLAKEFAIFRGELAKLKRGEASALHPSEPRTRLSEPSLDEAQQLIAQLKAALAP 533

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            L T   N         + +        L+ +  D+      ++   +G  L   F  +  
Sbjct: 534  LETVGPNPLD------LCEIGAQHCAALKALTTDDDGI-AEVFEGPQGSALLRAFDDLAA 586

Query: 594  TGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
             G    +   A ++ ++         V+      + + I G LE+RL   D ++LGGL E
Sbjct: 587  VGPASGVLVAARDYGEVFETAFGDRVVRRPELAEAPIRIYGPLEARLTQQDRVVLGGLVE 646

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
            GVWP     +P+LSR M+ +L L   E+ IG +AHDF  A G   +  T + +    P +
Sbjct: 647  GVWPPAPRIDPWLSRPMRHELGLDLPERRIGLSAHDFAQALGADEVFITHAAKVGGAPAV 706

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            ASR+L RL  + G D +  +K RGQ YLD+T +LD         +P P PP  A+P    
Sbjct: 707  ASRFLHRLEAVAGEDRWKAMKARGQTYLDYTHELDRPESVTPIAQPAPRPPRIARPLKLP 766

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             + I+  + DPY +YA+ IL+L  +          DRG+  H  + E  ++  +    + 
Sbjct: 767  VTAIEDWLRDPYTIYAKYILRLSPLDPVDMSLSGADRGSAIHAALGEFTERYQDALPDDP 826

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
               ++QI   HF           +W   F +I+  F   E++ ++ + ++       + I
Sbjct: 827  VTALRQIGQKHFAPLMDHAEARALWWPRFLRIATWFAAWEQQRRTGVVQVQAERRGTLMI 886

Query: 892  ESIG---IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
               G     L+  ADRI+    G   I DYKTG  P  +  +  + PQL+LEAA L+ G 
Sbjct: 887  PLGGERNFELSARADRIERRDDGSYAILDYKTGHPPTGKQVRMGLSPQLTLEAAILRDGG 946

Query: 949  FSQID-CRKVANLFYIRLKQKFKID-------CITNDKKKYSADELSEKSLKNLIEIVTL 1000
            F  I     V+ L Y++L               I    +    D+ ++++   L  +V  
Sbjct: 947  FEDIPAAASVSELTYVKLSGNTPPGDERVLELKIERKDEPQHPDDAADEARAKLEGLVRR 1006

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             ++ +QP+ S L LS  S     YD LAR+ EW    
Sbjct: 1007 FEDEKQPYRS-LVLSMWSQRYGTYDDLARIKEWSAAG 1042


>gi|126738528|ref|ZP_01754233.1| hypothetical protein RSK20926_08687 [Roseobacter sp. SK209-2-6]
 gi|126720327|gb|EBA17033.1| hypothetical protein RSK20926_08687 [Roseobacter sp. SK209-2-6]
          Length = 982

 Score =  593 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 262/1048 (25%), Positives = 447/1048 (42%), Gaps = 88/1048 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
               KP VF +     F + +   L+        R    +P  LA V + + T R  +  R
Sbjct: 5    PQDKPRVFALPLGVDFPKALASGLIQ-------RNAKHSPENLARVELILNTARMARRTR 57

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
            + F       + +LP ++ L  +VE    A      +L P +  ++R LEL++LI     
Sbjct: 58   NLFE---AGPALLLPRMRLLSSLVETGVIA------DLPPALPPLRRRLELSQLIAKLLE 108

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              PD+                ++   L+ +LA +ID +++E    E +  L        W
Sbjct: 109  TQPDLAAR-------------SSLFDLSDSLAGLIDEMQSEGVNTEAIRNLDVSDMSGHW 155

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIP 240
              A  F+ I  ++         A      Q  L+    E       + PI++AGSTGS  
Sbjct: 156  ARAQQFIGIVDQFIDLH---EGAVDAQARQRQLVHHLIESWEISPPQHPILLAGSTGSRG 212

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
             T  LM  +A  P GA++LPG D   P  +W+ + +  ++          HPQY  AKL+
Sbjct: 213  TTHILMEAIAKLPQGAVILPGYDFDQPLTVWSHLRDALSS--------EDHPQYRFAKLI 264

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
              LD+  ED++     +     R+ ++S +  P   ++    +    ++ ++    + + 
Sbjct: 265  SDLDLDPEDIRPWTKTAPVSPARNRLVSLALRPAPVTNAWMQE--GPELQDLDSACAQIT 322

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            L+EA + R EA++IA+ LR + ++  + +ALI+ DR L R+V   L R+ I  D SAG+P
Sbjct: 323  LVEAPSPRAEALAIALRLRQAAED-GQTAALISPDRMLTRQVSAALDRWDILPDDSAGLP 381

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLSRAKNALELVALRG 478
            L  T     L  +     K     A+ TL+KHPL             R     EL   R 
Sbjct: 382  LQLTPPGRFLRHVAELFCKPLTSDALLTLLKHPLTHDGPNAERGEHLRHTRDFELNIRRN 441

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                 D          R         +    +     D++     V  + Q    +    
Sbjct: 442  GPPFPDADSFYQFATGRDLLPGWVDWLADNFAAQEVSDRQALTNWVALLRQRAEAIAAGS 501

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI-IETGSC 597
             N  +                           +   LW ++ G+T  +LF  +  +    
Sbjct: 502  QNLAA--------------------------GETGPLWEKKAGQTALALFEDLEAQALHG 535

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
             + +A ++ D++  ++    V+ +     ++ I GTLE+R+   D +ILGGLNEG WP+ 
Sbjct: 536  GEMSARDFADLLGAILSQGEVRDRDAPYGSIMIWGTLEARVQGADLVILGGLNEGSWPEA 595

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
               +P+L+R ++    L   E+ IG AAHDF+ A     +  TR+ R +   T+ SRWL 
Sbjct: 596  AKPDPWLNRQLRHQAGLLLPERRIGLAAHDFQQAIAAPEVWLTRAARTDEADTVPSRWLN 655

Query: 718  RLLVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
            RL  L       GG      +  RGQ +LDW   L+        KRP P PP+ ++PR  
Sbjct: 656  RLTNLLAGLPDQGGKAALTGMLDRGQVWLDWAEALEAPAPADPAKRPSPQPPVPSRPRRL 715

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            + +EI +LI DPYA+YA+ +L+L  +    ++PD   RG + H +  + IK   +     
Sbjct: 716  TITEIPRLIRDPYAIYAKHVLRLRPLDPLVQEPDALLRGIVVHEVFEKFIKTCQDNPEGL 775

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                +  + D   ++    P   ++W     K++  F+  E++ Q+    +      +  
Sbjct: 776  TAANLTAMADELLQEHVPWPVARLLWHSRIEKLAEDFVTGEKERQNRARPVAFEAKGEAR 835

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            +E +   +   ADRID  + GF+ + DYKTG  P +   QK  + QL +EAA  + G+F 
Sbjct: 836  LEPLDFTIACRADRIDQDERGFLHLYDYKTGAPPSEAQ-QKKFEKQLLIEAAMAEEGAFK 894

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
             +    VA+  ++ +    K             +E   K  + L +++    +  Q + S
Sbjct: 895  DLGPADVASAAFLGIGSSLKEVAAPLS------EEPPAKIWEELKKLIEAYFDPNQGYSS 948

Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038
              R+  + ++  +YDHLAR  EW    +
Sbjct: 949  R-RMVHRDDLAGDYDHLARFGEWDRAAE 975


>gi|149201425|ref|ZP_01878400.1| hypothetical protein RTM1035_17407 [Roseovarius sp. TM1035]
 gi|149145758|gb|EDM33784.1| hypothetical protein RTM1035_17407 [Roseovarius sp. TM1035]
          Length = 979

 Score =  593 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 258/1045 (24%), Positives = 444/1045 (42%), Gaps = 87/1045 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             +  P ++ + P   F R ++  L          +    P  LA V + V T+R  + +R
Sbjct: 4    PSDTPRLYGVPPGVDFPRALVEGLRAH-------HAGKPPEALARVQLIVNTRRMARRIR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              F         +LP I  L D+ E      L    ++  PV  ++R LEL +LI    +
Sbjct: 57   ELF---DAGPPCLLPRISLLTDLGE------LWDLAHIPDPVPPLRRRLELVQLIATLLD 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              PD+                +    L+ +LA ++D +  E    + +  L        W
Sbjct: 108  NAPDLAPR-------------SAIYDLSDSLAGLMDEMHGEGVAPQAIETLDITDQSGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                 FL I   Y+       +  +    ++ + R  A         P+I+AGSTGS  A
Sbjct: 155  ARIKSFLGIVRHYFEIGGAAPDVET--RQRLVIERLAALWADTPPAHPVILAGSTGSRGA 212

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  LM  VA  P GA+VLPG D  +P  +W+ + +   +          HPQY   ++  
Sbjct: 213  TQHLMQAVARLPQGAVVLPGFDFEMPAPVWDALGDAMLS--------EDHPQYRFCRVAA 264

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
               I   D++   ++S     R+ ++S +  P   +D    D     + +I    ++V L
Sbjct: 265  GAGITPADIRPWSDISPANPARNALVSLALRPAPVTDQWLRD--GPHLRDIAGAMANVTL 322

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA ++R+EA++IA+ LR + ++  + +ALIT DR L R+V   L R+ I  D SAG+PL
Sbjct: 323  VEAPSQRQEALAIALRLRQAAED-GRTAALITPDRTLTRQVTAALDRWDILPDDSAGLPL 381

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  + +         ++ TL+KHPLA  G       R    LEL   R    
Sbjct: 382  HLSPPGRFLRHVADLFRTRLSAESLLTLLKHPLAHQGAERGPHLRLTRELELHLRRHGPP 441

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                  L+                       +++   LA   V+ +  C           
Sbjct: 442  YPTEESLRLWA--------------------ADQKDPLAPEWVNWLCACF--------VN 473

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP-NLWFEEEGKTLSSLFSKI-IETGSCIK 599
                G + +       +   + +    H      LW ++ G+      +++  E      
Sbjct: 474  RDYSGEIPLDHSVATHLDLAEKIAQGCHGTGSGTLWLKDAGQEAQKAVTELRAEAHHAGA 533

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +A ++  +  +++    V+  ++    + I GTLE+R+   D LIL GLNEG WP++  
Sbjct: 534  LSASDYSSLFHKILSAREVRNPVDPHPHILIWGTLEARVQGADLLILAGLNEGSWPESPK 593

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R ++  + L   E+ IG +AHDF+ A     +  TRS+R  +  T+ SRWL R+
Sbjct: 594  PDPWLNRALRHQVGLLLPERRIGLSAHDFQQAIAAPEVWLTRSVRSADAETVVSRWLNRI 653

Query: 720  LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
            L L       GG    ++++ RG+ +LD    L+   + P   RP P PP+  +P   + 
Sbjct: 654  LNLLSGLPDQGGQAAIEDMRNRGRLWLDRATALEDPGEVPRATRPAPAPPVAVRPDHLTV 713

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +EIK+LI DPYA+YAR ILKL  +    + PD   RGT+ H I+   I++ ++      +
Sbjct: 714  TEIKRLIRDPYAIYARHILKLRPLDPLMRAPDALLRGTVLHEILEGFIRETLDHPEHCDH 773

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
              + +  ++   +         +W     +++  F++ E + ++    +      +  + 
Sbjct: 774  ATLMRHAETVLAENVPWAEARALWLARLDRVADWFIDTEARRRTLARPVHFEAKGRATLP 833

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             +G  L+  ADR+DL   G + I DYKTG  P  +  Q   D QL LEAA      F  +
Sbjct: 834  DLGFTLSAKADRLDLDDLGQLHIYDYKTGAPPSTKE-QTSFDKQLLLEAAIATRSGFEGM 892

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
               +VA   +I L  + K      D +        EK       +++   + +  + +  
Sbjct: 893  GPTRVARAVFIGLGSEPKELDAPLDTEPP------EKIWAEFHALISAYFDPDMGYTARR 946

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037
                 ++   +YD LAR  EW +  
Sbjct: 947  AP-RNADEDGDYDQLARYGEWDQTD 970


>gi|192288511|ref|YP_001989116.1| double-strand break repair protein AddB [Rhodopseudomonas palustris
            TIE-1]
 gi|192282260|gb|ACE98640.1| double-strand break repair protein AddB [Rhodopseudomonas palustris
            TIE-1]
          Length = 1049

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 307/1057 (29%), Positives = 491/1057 (46%), Gaps = 42/1057 (3%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
            ++F++  S+PF R  I AL++G LVE F      P  LA  T+Y+PT+RA +  R  F++
Sbjct: 2    HLFSVPSSAPFLRTTIAALVDGRLVEGFDVR-TAPERLADATLYLPTRRAGRMAREIFLD 60

Query: 67   ITGKKSTILPIIKSLGDVVEEKFT----ADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
            + G  + +LP I +LGD+ E++      A  L    + P +  + R L L +LI  W  +
Sbjct: 61   VLGADAVLLPRIVALGDIDEDELAFAQAASGLADLEIPPALDGLPRRLLLTQLIASWAAR 120

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            L        P     +   PA+A+ LA +LA +ID + T    W  L  L  + +  +W 
Sbjct: 121  LKPD----DPTQAPLVVGGPASALALADDLARLIDDMSTRGVDWSALETLVPDAFDRYWS 176

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
            L  DFLKIA   W + L E +   P   +  L+ AEA+ L     GP+I AGSTGS+PAT
Sbjct: 177  LTLDFLKIAGHAWPQYLKETDRIEPAARRDRLIDAEAQRLATQRSGPVIAAGSTGSMPAT 236

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAKLLD 301
            A+L++ +A  P+GA+VLPGLD  +  A W+ I   +             HPQY++  LLD
Sbjct: 237  AKLLTAIARLPHGAVVLPGLDIDLDDAAWDLIGGSRDRQGKLVTPPSPNHPQYAMHGLLD 296

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI-QKCFSDVA 360
             + + R DV++LG  +   +GR ++ S++  P   + + +  + + ++  +  +    + 
Sbjct: 297  RMGVTRRDVQQLG--TPARHGRELLSSEALRPSSATAVWHDRLKDAEVDRLIGEGTDGLT 354

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            LIEA N   EA++IA+ LR + ++  K +AL+T DR LARRV   L R+ + +D S G  
Sbjct: 355  LIEAPNSEAEALAIAVVLREAREQ-GKTAALVTPDRALARRVVAALGRWHLPVDDSGGDS 413

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L  T                 +   +  L+KHPL + G        A   LEL  LRG +
Sbjct: 414  LMETQPGIFARLAAETALDGCEPATLLALLKHPLLRLGRTGYGWRGAIETLELALLRGPR 473

Query: 481  NSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
             S     L       +  +      + +  H    ++RLSE   + A  L+  +   + P
Sbjct: 474  PSAGCDGLAKEFAIFRGELAKLKRGEASALHPSEPRTRLSEPSLDEAQDLIAQLKAALAP 533

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            L T   N         + +        L+ +  D+      ++   +G  L   F  +  
Sbjct: 534  LETVGPNPLD------LCEIGARHCAALKALTTDDEGI-AEVFEGPQGSALLRAFDDLAA 586

Query: 594  TGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
             G    +   A ++ ++         V+      + + I G LE+RL   D ++LGGL E
Sbjct: 587  VGPASGVLVAARDYGEVFETAFGDRVVRRPELAEAPIRIYGPLEARLTQQDRVVLGGLVE 646

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
            GVWP     +P+LSR M+ +L L   E+ IG +AHDF  A G   +  T + +    P +
Sbjct: 647  GVWPPAPRIDPWLSRPMRHELGLDLPERRIGLSAHDFAQALGADEVFITHAAKVGGAPAV 706

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            ASR+L RL  + G D +  +K RGQ YLD+T +LD         +P P PP  A+P    
Sbjct: 707  ASRFLHRLEAVAGEDRWKAMKARGQIYLDYTHELDRPESVTPIAQPAPRPPRIARPLKLP 766

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             + I+  + DPY +YA+ IL+L  +          DRG+  H  + E  ++  +    + 
Sbjct: 767  VTAIEDWLRDPYTIYAKYILRLSPLDPVDMPLSGADRGSAIHAALGEFTERYQDALPDDP 826

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
               ++QI   HF           +W   F +I+  F   E++ ++ + ++       + I
Sbjct: 827  VTALRQIGQKHFAPLMDHAEARALWWPRFLRIATWFAAWEQQRRTGVVQVQAERRGTLMI 886

Query: 892  ESIG---IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
               G     L+  ADRI+    G   I DYKTG  P  +  +  + PQL+LEAA L+ G 
Sbjct: 887  PLGGERNFELSARADRIERRDDGSYAILDYKTGHPPTGKQVRMGLSPQLTLEAAILRDGG 946

Query: 949  FSQID-CRKVANLFYIRLKQKFKID-------CITNDKKKYSADELSEKSLKNLIEIVTL 1000
            F  I     V+ L Y++L               I    +    D+ ++++   L  +V  
Sbjct: 947  FEDIPAAASVSELTYVKLSGNTPPGDERVLELKIERKDEPQHPDDAADEARAKLEGLVRR 1006

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             ++ +Q + S L LS  S     YD LAR+ EW    
Sbjct: 1007 FEDEKQSYRS-LVLSMWSQRYGTYDDLARIKEWSAAG 1042


>gi|163738015|ref|ZP_02145431.1| hypothetical protein RGBS107_06374 [Phaeobacter gallaeciensis BS107]
 gi|161388631|gb|EDQ12984.1| hypothetical protein RGBS107_06374 [Phaeobacter gallaeciensis BS107]
          Length = 977

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 267/1045 (25%), Positives = 444/1045 (42%), Gaps = 89/1045 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P +F +     F R ++  L+        R +  +P  LA V   V T R  + +R
Sbjct: 5    PQDTPRLFAVPCGVDFPRALVDGLVA-------RSENTSPEELAKVEFIVNTSRMARRVR 57

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              F +     + +LP I  L D+              L P +  ++R LEL++LI     
Sbjct: 58   DLFDQ---GPALLLPRISLLSDLDMRATLR------GLPPALPPLRRRLELSQLIAKLLE 108

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              PD+                ++   L+ +LA + D ++ E    E + +L        W
Sbjct: 109  AQPDLAAR-------------SSLYDLSDSLAALFDEMQGEGVSPETIRSLDVSDMSGHW 155

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A  F+ IA ++      E    +    +  ++    E      + P+I+AGSTGS   
Sbjct: 156  ARAQQFIAIADEF--AETHEHAMDAQARQRQVVLDLIEEWQDSPPQHPVILAGSTGSRGT 213

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  LM  +A  P GA++LPG D   P  +W  + +   +          HPQY   K++ 
Sbjct: 214  TLMLMEAIARLPQGAVILPGFDDQQPGHVWEHLDDPLMS--------EDHPQYRFFKIMR 265

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             LD+  + V+   +       R+ ++S +  P   +D    +    ++ +I +  +DV+L
Sbjct: 266  DLDMTPDQVRPWVDAIPASMARNRLVSLALRPAPVTDAWMRE--GPELRDIDQATADVSL 323

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA N R EA++IA+ LR + ++  + +ALIT DR L R+V   L R+ I  D SAG PL
Sbjct: 324  VEAPNPRAEALAIALRLRKAAED-GQTAALITPDRMLTRQVAAALDRWDILPDDSAGQPL 382

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  +     K      + TL+KHPL   G       R    LEL   R    
Sbjct: 383  QLSPPGRFLRHIAELFCKPLACDTLLTLLKHPLCHDGAGRGDHLRHTRELELRLRRYGPP 442

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              D     +                                +   ++   T  +T     
Sbjct: 443  FPDPDSFAAF------------------------------EIGRELMPGWTAWLTQCFAD 472

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEGKTLSSLFSKI-IETGSCIK 599
                G   +S W        + +           LW ++ G+    + + +  E G   +
Sbjct: 473  KPISGTQPLSQWVDALRNLAEAISRGSQNAADGGLWDKKAGRKALEIVNNLQAEAGYGGQ 532

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              A ++ D++  L+    V+ +     ++ I GTLE+R+   D +ILGGLNEG WP+   
Sbjct: 533  MTARDFADLLRALLSQGEVRDRDAPYGSILIWGTLEARVQGADLVILGGLNEGSWPEAAT 592

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R ++    L   E+ IG +AHDF+ A     +  TRS R +   T+ SRWL R+
Sbjct: 593  PDPWLNRQLRHQAGLLLPERRIGLSAHDFQQAVAAPEVWLTRSERSDEADTVPSRWLNRM 652

Query: 720  LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              L       GG     +++ RGQ +L W   L+  T  P  KRP P PP+ A+PR  + 
Sbjct: 653  TNLLSGLPGQGGPAALADMRARGQEWLGWAEVLEAPTSLPPAKRPAPRPPVAARPRRLTI 712

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +EI +LI DPYA+YA+ +LKL  +    ++PD   RG + H I+ + IK  +        
Sbjct: 713  TEIPRLIRDPYAIYAKHVLKLRPLDPLVQEPDALLRGIVLHKILEDFIKASVTDPKRLTV 772

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                    +H E +   P    +W     +I+  F+  E++ Q+  +     +   + + 
Sbjct: 773  PDFLTTATAHLEAKVPWPVARSLWLARLERIAEDFITGEQQRQAIAQPSGFEVSGTVRVA 832

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             +   + G ADRID+ + G + + DYKTGD P +   QK  + QL +EAA  + G+F + 
Sbjct: 833  PLDFEIAGTADRIDVDERGGLHLFDYKTGDPPTESQ-QKTFEKQLLIEAAMAERGAFERY 891

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
               +V    ++ LK          +      DE   K  + L ++++     +Q + S  
Sbjct: 892  GEGRVERALFLGLKSP------LKEVAAPLLDEPPSKVWEELTKLISAYFEPDQGYSSR- 944

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037
            R+  +     +YDHLAR  EW    
Sbjct: 945  RMVFQDTQTGDYDHLARYGEWDRSD 969


>gi|163742589|ref|ZP_02149975.1| hypothetical protein RG210_06869 [Phaeobacter gallaeciensis 2.10]
 gi|161384174|gb|EDQ08557.1| hypothetical protein RG210_06869 [Phaeobacter gallaeciensis 2.10]
          Length = 977

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 267/1045 (25%), Positives = 445/1045 (42%), Gaps = 89/1045 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P +F +     F R ++  L+        R    +P  LA V + V T R  + +R
Sbjct: 5    PQDTPRLFAVPCGVDFPRALVDGLVA-------RSQNTSPEELAKVELIVNTSRMARRVR 57

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              F +     + +LP I  L D+              L P +  ++R LEL++LI     
Sbjct: 58   DLFDQ---GPALLLPRISLLSDLDMRATLR------GLPPALPPLRRRLELSQLIAKLLE 108

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              PD+                ++   L+ +LA + D ++ E    E + +L        W
Sbjct: 109  AQPDLAAR-------------SSLYDLSDSLAALFDEMQGEGVSPEIIRSLDVSDMSGHW 155

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A  F+ IA ++      E    +    +  ++    E      + P+I+AGSTGS   
Sbjct: 156  ARAQQFIAIADEF--AETHEHAMDAQARQRQVVLDLIEEWQDSPPQHPVILAGSTGSRGT 213

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  LM  +A  P GA++LPG D   P  +W  + +   +          HPQY   K++ 
Sbjct: 214  TLMLMEAIARLPQGAVILPGFDDQQPGHVWEHLDDPLMS--------EDHPQYRFFKIMR 265

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             LD+  + V+   +       R+ ++S +  P   +D    +    ++ +I +  +DV+L
Sbjct: 266  DLDMTPDQVRPWVDAIPASMARNRLVSLALRPAPVTDAWMRE--GPELRDIDQATADVSL 323

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA N R EA++IA+ LR + ++  + +ALIT DR L R+V   L R+ I  D SAG PL
Sbjct: 324  VEAPNPRAEALAIALRLRKAAED-GQTAALITPDRMLTRQVAAALDRWDILPDDSAGQPL 382

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  +     K      + TL+KHPL   G       R    LEL   R    
Sbjct: 383  QLSPPGRFLRHIAELFCKPLACDTLLTLLKHPLCHDGVGRGDHLRHTRELELRLRRYGPP 442

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              D     +                                +   ++   T  +T    +
Sbjct: 443  FPDPDSFAAF------------------------------EIGRELMPGWTAWLTQCFAE 472

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEGKTLSSLFSKI-IETGSCIK 599
                G   +S W        + +           LW ++ G+    + + +  E G   +
Sbjct: 473  KPISGTQPLSQWIDALRNLAEAISRGSQNAADGGLWDKKAGRKALEIINNLQAEAGYGGQ 532

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              A ++ D++  L+    V+ +     ++ I GTLE+R+   D +ILGGLNEG WP+   
Sbjct: 533  MTARDFADLLRALLSQGEVRDRDAPYGSILIWGTLEARVQGADLVILGGLNEGSWPEAAT 592

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R ++    L   E+ IG +AHDF+ A     +  TRS R +   T+ SRWL R+
Sbjct: 593  PDPWLNRQLRHQAGLLLPERRIGLSAHDFQQAVAAPEVWLTRSERSDEADTVPSRWLNRI 652

Query: 720  LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              L       GG     +++ RGQ +L W   L+  T  P  KRP P PP+ A+PR  + 
Sbjct: 653  TNLLSGLPGQGGPAALADMRARGQEWLGWAEVLEAPTSLPPAKRPAPRPPVAARPRRLTI 712

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +EI +LI DPYA+YA+ +LKL  +    ++PD   RG + H I+ + IK  +        
Sbjct: 713  TEIPRLIRDPYAIYAKHVLKLRPLDPLVQEPDALLRGIVLHKILEDFIKASVTDPKRLTV 772

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                    +H E +   P    +W     +I+  F+  E++ Q+  +     +   + + 
Sbjct: 773  PDFLTTATAHLEAKVPWPVARSLWLARLERIAEDFITGEQQRQAIAQPSGFEVSGAVRVA 832

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             +   + G ADRID+ + G + + DYKTGD P +   QK  + QL +EAA  + G+F + 
Sbjct: 833  PLDFEIAGTADRIDVDERGGLHLFDYKTGDPPTESQ-QKTFEKQLLIEAAMAERGAFERY 891

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
               +V    ++ LK          +      DE   K  + L ++++     +Q + S  
Sbjct: 892  GEGRVERALFLGLKSP------LKEVAAPLLDEPPSKVWEELTKLISAYFEPDQGYSSR- 944

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037
            R+  +     +YDHLAR  EW    
Sbjct: 945  RMVFQDTQTGDYDHLARYGEWDRSD 969


>gi|163757507|ref|ZP_02164596.1| hypothetical protein HPDFL43_18892 [Hoeflea phototrophica DFL-43]
 gi|162285009|gb|EDQ35291.1| hypothetical protein HPDFL43_18892 [Hoeflea phototrophica DFL-43]
          Length = 1068

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 383/1063 (36%), Positives = 569/1063 (53%), Gaps = 28/1063 (2%)

Query: 1    MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
            M    P++ TI P +PF   ++  +  G L++   Y P +PL LA  TI+VPT+RA + L
Sbjct: 1    MTRSAPHIVTIPPGAPFLSVLVEKIHGGGLIDGLAYRPEDPLSLARATIFVPTRRAARAL 60

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLS--YNLNPPVSNIQRLLELARLILI 118
            RSE  +  G  S ILP I+ LG+  E+    D       +L+P +      L LA L+L 
Sbjct: 61   RSELTDRIGVGSAILPSIRPLGETDEDAGFFDSADPATLSLDPAIPQTAATLRLADLVLA 120

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
            W+  LP  + D    +PL  P +PA+AIWL ++L D+I  +ETEE  +  L  + +E   
Sbjct: 121  WKKALPRAVLDHLGGAPLVAPANPADAIWLGRSLFDLIQAVETEECDFAGLDQVVSEDLQ 180

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTG 237
             WW L  +FL IA +YW   L E++ SSP G+  A++      L       P+I+AGSTG
Sbjct: 181  QWWQLTREFLAIAREYWPALLTEISRSSPAGHHNAMIDVFTRALTTDPEDRPVIVAGSTG 240

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT------EKSTNITSSNTTYSTH 291
            + P+TARL++ +A+ P GA+VLPGLD  +  + W  +              S +    +H
Sbjct: 241  TRPSTARLIAAIAHLPRGAVVLPGLDHAMGLSHWQDLAKSVSVTAPPGTPVSFDPAARSH 300

Query: 292  PQYSLAKLLDFLDIKREDVKRLGN---VSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
            PQY L +LL+   +    +  +     +   M  R   +S + LP  T++          
Sbjct: 301  PQYGLLRLLESCGVDIASLGDIPEIAMLEGAMEVRRAAVSAALLPAGTTEAWGEPGFLPD 360

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS----ALITADRNLARRVKL 404
               + + F+ V+LIEA NEREEA ++A A+R +L+   K +    AL+T DRNLARRV +
Sbjct: 361  ASALSQAFASVSLIEAANEREEAAALAAAMRQALEPGSKSAEPVVALVTPDRNLARRVVV 420

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
            EL R+GI  + S GIPL ++    ++   +   F   D +AI  L+KHPLA+FG  ++  
Sbjct: 421  ELQRYGIEANDSGGIPLMSSPQGGLVRLAVQVAFAPGDAVAITALIKHPLARFGLDQQSA 480

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
             +    +E +ALRG     D+  L++LV +R    +   H   W +R+S++D E A    
Sbjct: 481  QQLAGIVERIALRGGSGEADVDQLETLVAERS-EARKKPHAARWLTRISDQDAEAARDFA 539

Query: 525  DHILQCITPLVTYK--TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
              +   ++PL +             + I     LT   L+ +C DE   L  LW +E G+
Sbjct: 540  ARVADALSPLTSILVEAPGQRFSNAVDIGGLAGLTAETLEKICSDETGSLEPLWGDEAGE 599

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             LS++  +  ++GS +     EWI  +  LI G  VKP+       FI G LE+RL + D
Sbjct: 600  VLSNILLETRDSGSTLTITGHEWIGALDALISGRMVKPRTGGHPRAFIWGALEARLQHVD 659

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
            T++LG LNEGVWP+   ++PFLSR M++ + L+  E+ IGQAAHDF+MA G   ++ +R+
Sbjct: 660  TILLGALNEGVWPQAGQEDPFLSRSMKAAMGLEPPERRIGQAAHDFQMAMGAPQVVLSRA 719

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
             R    PT+ASRWLQRLL + G+D    L+ RG   LD  R LD  T      RP+P PP
Sbjct: 720  NRSGKAPTVASRWLQRLLAVAGSDTATALRHRGDALLDHVRSLDQATPVSPAIRPEPKPP 779

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
             + QP++YSFSE+  L  DPYA+YARR+L+LD +  F  DP   +RGTL+H I+ + I  
Sbjct: 780  AQMQPQSYSFSEVATLRRDPYAIYARRVLRLDPLEPFLTDPGPRERGTLYHAILEQFIAS 839

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
            R   +       +++I  +HF    LP    +IW+  F K + +    E  I S   +  
Sbjct: 840  RAPGD--RTLEALREIAAAHFLDAELPDATALIWQSRFDKAAAAIAGWEAGIASGHGRSV 897

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
            V   A + +   GI LTG ADRIDL   G   I DYKTG  P ++ A+ L+DPQL+LEA 
Sbjct: 898  VEARASLEMPLAGIRLTGMADRIDLRADGTAWIIDYKTGGTPSRKQARTLLDPQLALEAH 957

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLI 995
            AL+ G F+ +     + L Y+RL  K                 +  + DEL++K+   L 
Sbjct: 958  ALRQGGFADLGALPASALLYLRLTGKDPFAERVDNDPEKPGRDEFLNPDELAQKAADELT 1017

Query: 996  EIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
             +VTLL++G++ F+S        +   +YDHLARVAEW+   D
Sbjct: 1018 WLVTLLRSGKRGFLSRAIPKSVRDFAGDYDHLARVAEWQTVVD 1060


>gi|254477674|ref|ZP_05091060.1| double-strand break repair protein AddB [Ruegeria sp. R11]
 gi|214031917|gb|EEB72752.1| double-strand break repair protein AddB [Ruegeria sp. R11]
          Length = 977

 Score =  589 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 269/1045 (25%), Positives = 438/1045 (41%), Gaps = 89/1045 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P +F++     F R ++  ++        R     P  LA   + V T R  + +R
Sbjct: 5    PQDTPRLFSVPCGVDFPRALVQGMIE-------RASGQPPEALAKAELIVNTSRMARRVR 57

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              F       S +LP I  L D+              L P +  ++R LEL++L+     
Sbjct: 58   DLFDR---GPSVLLPKISLLTDLDLRATLR------GLPPALPPLRRRLELSQLVAKLLE 108

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              PD+                ++   L+ +LA + D ++ E    + + AL        W
Sbjct: 109  AQPDLAAR-------------SSLYDLSDSLAALFDEMQGEGVSTDTIRALDVSDMSGHW 155

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A  F+ IA  +      E         + A++   AE      + PII+AGSTGS   
Sbjct: 156  ARAQQFIAIADDF--ATTHENAMDPQERQRQAVLDLIAEWDETPPQHPIILAGSTGSRGT 213

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  LM  +A  P GA+VLPG D   P  +W T+++  ++          HPQY   KL+ 
Sbjct: 214  TLLLMEAIAKLPQGAVVLPGFDEDQPDHVWQTLSDALSS--------EDHPQYRFFKLMQ 265

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L++   DV+R  + +     R+ ++S +  P   +D    +    ++ +I    S++ L
Sbjct: 266  DLEMGPRDVRRWTDANPASTPRNRLVSLALRPAPVTDAWMRE--GPQLRDIDSATSEITL 323

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA   R EA++IA+ LR + ++  + +ALIT DR L R+V   L R+ I  D SAG PL
Sbjct: 324  VEAPGPRAEALAIALRLRQAAED-GQTAALITPDRMLTRQVSAALDRWDILPDDSAGQPL 382

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  +     K     A+ TL+KHPL   G       R    LEL   R    
Sbjct: 383  QLSPPGRFLRHVAELFCKPLQTDALLTLLKHPLCHDGAGRGDHLRHTRDLELRLRRYGPP 442

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              D     +  + R                      +L     D +  C           
Sbjct: 443  FPDHDSFAAFAVGR----------------------DLMPGWTDWLASCFAD-------- 472

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN-LWFEEEGKTLSSLFSKI-IETGSCIK 599
             +T G   +S+W        + +           LW ++ G+    +   +  E      
Sbjct: 473  KTTQGERHLSEWVSQLRDLAETISKGSQPAEAGGLWDKKAGREALKVIENLQAEAPYGGA 532

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              A ++ D++  L+    V+ +     ++ I GTLE+R+   D +ILGGLNEG WP+  A
Sbjct: 533  MTARDFADLLRALLSQGEVRDRDAPYGSILIWGTLEARVQGADLVILGGLNEGTWPEAAA 592

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R ++    L   E+ IG +AHDF+ A     +  TR+ R +   T+ SRWL R+
Sbjct: 593  PDPWLNRQLRHKAGLLLPERRIGLSAHDFQQAIAAPEVWLTRAERTDEADTVPSRWLNRM 652

Query: 720  LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              L       GG      +K RGQ +L     L+        +RP P PP+ A+P+  + 
Sbjct: 653  TNLLSGLPDQGGPGALSAMKARGQMWLGRAEALEAPKPLAPAQRPAPRPPIAARPKRLTI 712

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +EI +LI DPYA+YA+ +L+L  +    ++PD   RG + H I+ + +K  +        
Sbjct: 713  TEIPRLIRDPYAIYAKHVLRLRPLDPLVQEPDALLRGIVLHKILEDFVKGTLEDPKTLTV 772

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                       E +   P    +W+    +I+  F+  E   Q+        +  K+ + 
Sbjct: 773  DHFLTCAAEQLEAQVPWPVARALWQARLERIAEDFIAGERNRQARARPSGFEVSGKVRVT 832

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
                 + G ADRID+ + G + + DYKTGD P +   QK  + QL +EAA  + G+F   
Sbjct: 833  PHDFEIAGTADRIDVDERGGLHLFDYKTGDPPSENQ-QKAFEKQLLIEAAMAEHGAFETY 891

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
               +V    ++ LK   K             DE   K  + L +++      EQ + S  
Sbjct: 892  GEGRVERALFLGLKAPLKEVPAPL------QDEPPAKVWEELSKLIGAYFEPEQGYSSR- 944

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037
            R+  + +   +YDHLAR  EW    
Sbjct: 945  RMVFQDSQIGDYDHLARYGEWDRSA 969


>gi|110635906|ref|YP_676114.1| DNA helicase/exodeoxyribonuclease V, subunit B [Mesorhizobium sp.
            BNC1]
 gi|110286890|gb|ABG64949.1| DNA helicase/exodeoxyribonuclease V, subunit B [Chelativorans sp.
            BNC1]
          Length = 1042

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 370/1048 (35%), Positives = 561/1048 (53%), Gaps = 23/1048 (2%)

Query: 1    MHNKK--PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQ 58
            M  ++  P VF+I P  PF   +  ALL G LV  FRYD  +PL LA  TIY+PT+RA +
Sbjct: 1    MSTERNSPRVFSIPPGVPFLPALADALLQGRLVPGFRYDG-DPLSLADATIYLPTRRAAR 59

Query: 59   ELRSEFIEITGKKSTILPIIKSLGDVVE---EKFTADLLLSYNLNPPVSNIQRLLELARL 115
            ELRS F++  G  S ILP+I+ LG+      +          +  PP+  + R+L L  L
Sbjct: 60   ELRSVFVDRLGGVSAILPVIRPLGEFEAELADLSDEGGAAQLDHAPPIPKLDRILLLGSL 119

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
               W+ ++P  +   + E  + +P S ++ +WLA++LA ++D IETEE  W  L  L  E
Sbjct: 120  AQAWKARVPAHVAARFEEG-VIVPASLSDGLWLARDLAALMDEIETEEGDWSRLAELVPE 178

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAG 234
            +   WW +  +FL I ++ W E L E + S+P  ++ A++ AEA  L     +GP+I AG
Sbjct: 179  ELAGWWQVMLEFLNIVTRAWPELLAERDRSNPATHRNAMLAAEAARLMRTPPRGPVIAAG 238

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
            STGSIPATARL+ T+A   NGA+VLPGLD ++    W  +            +   HPQ+
Sbjct: 239  STGSIPATARLLGTIARLENGAVVLPGLDLNLDEDSWRAVGA------IEGPSACGHPQF 292

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             L KL+  + + R  V  L   + E+  R  ++S++  P DT+D+   +         Q 
Sbjct: 293  GLRKLIGTIGVARAQVLELAAPAPELAARRQLLSEAMRPADTTDLWALNRSMVDRALSQG 352

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
              + V+LIEA NER+EA +IA+ALR ++      +AL+T +R LARRV  EL RFGI  D
Sbjct: 353  ALAGVSLIEAANERDEAAAIAVALRHAIAREGTTAALVTPNRTLARRVAAELKRFGIRAD 412

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
             S G  L+ ++ +++L  +L AI +  + + I  L+KHPL + G P + + RA   +EL+
Sbjct: 413  DSGGSLLADSVPATLLRLMLEAICRPKEPVVIVGLLKHPLLRLGLPRERVRRAAEVIELM 472

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
            ALRG     D+  L SL   R      +   P W SRLS  D   A  ++  + Q I PL
Sbjct: 473  ALRGGTGRPDVATLSSLFAQRHDAMMRDPRKPFWLSRLSASDIAEARQVLAALEQAIVPL 532

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
             + +           +S   + +V   + +  DE   L  L+  E G+ L+     ++E 
Sbjct: 533  SSLREAAAV-----GLSLLARASVEAFEALARDEDGTLNELYRGEAGEALARFLRDLVEC 587

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
             +  KA   EW D+   L+ GE VKP +     + I G LE+RL + D L+LGGLNEG W
Sbjct: 588  RTGTKAEISEWPDVFAALMAGEVVKPAMGADQRIAIWGALEARLQSVDMLVLGGLNEGTW 647

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
            P+    + F+SR+M+ +L L+  E+ IG AAHDF MA G   ++  RS R  + P +ASR
Sbjct: 648  PEAPRSDRFMSRLMKGELKLEPPERRIGLAAHDFMMAFGAPQVVLARSTRSESAPAVASR 707

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            WLQRL    G      ++ RGQ ++ W   L+     P   RP P PPLEA+P+ +S +E
Sbjct: 708  WLQRLAACAGPSETAAMRARGQRFIAWAHALEARDDVPFAPRPCPRPPLEARPKRFSVTE 767

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
            I+ L  DPYAVYARRILKL  +    +DP   +RGTLFH+I+   I+   + + P+    
Sbjct: 768  IETLRRDPYAVYARRILKLMPLDPLIRDPGAAERGTLFHDILQAFIQSGADPSAPDALER 827

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK-MAIES 893
            +       F +  LP  ++ +W   F + ++  +  E     ++      I A  + + +
Sbjct: 828  LLDAGKKLFAETKLPVDVEAVWWPRFERTAYGIIGWERGRAEAVAARHAEIRASAIEVGA 887

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
             G  L+G ADRID+   G  +I DYKTG  P K  A +L+ PQL+LEAA L  G+F ++ 
Sbjct: 888  TGKLLSGRADRIDIRADGSAEIIDYKTGSTPSKVQAHRLLAPQLALEAALLARGAFVELG 947

Query: 954  CRKVANLFYIRLKQKFKIDC---ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
              + A L Y+RLK    ++    +     + +  E++E++ + L  ++    N E  ++S
Sbjct: 948  QAQPAELCYVRLKANGTVEPESILKIKDSEKAGPEIAEEAWQRLERLLAWYDNSEAGYLS 1007

Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038
                 ++ + + +YDHLARV EW    D
Sbjct: 1008 RALPFKEGDTEGDYDHLARVLEWSAGGD 1035


>gi|163745130|ref|ZP_02152490.1| hypothetical protein OIHEL45_06065 [Oceanibulbus indolifex HEL-45]
 gi|161381948|gb|EDQ06357.1| hypothetical protein OIHEL45_06065 [Oceanibulbus indolifex HEL-45]
          Length = 985

 Score =  588 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 277/1044 (26%), Positives = 438/1044 (41%), Gaps = 84/1044 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P +F +AP   F R ++  L +       R +   P  +A V + V T R  + LR
Sbjct: 4    PQDTPRIFGLAPGVDFPRGLVRGLCD-------RLENDPPEAMARVELIVNTNRMARRLR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
             +F       +  LP I+ + D+        L     L  P   +QR LEL +L+    +
Sbjct: 57   HDF---DAGPAGFLPRIRLITDLD------ALAPGVALPAPTPPLQRRLELIQLVSRLLD 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              PD+                 +   L+ +LA +ID ++ E    E +  L        W
Sbjct: 108  AAPDLAPRE-------------SLYALSDSLAGLIDEMQGEGVSPETVAGLDVGHLSAHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A  FL IA  Y  +     +A      +  + R          + P+I+AGSTGS   
Sbjct: 155  ERAQRFLAIAHDYLGQTTTRPDA--EARRRQLVARIIVRWQDNPPQHPVILAGSTGSRGT 212

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            TA LM  VA  P GAI+LPG D  +PTA+WN + +              HPQY   KL++
Sbjct: 213  TALLMEAVARLPQGAIILPGFDFEMPTAVWNELDQALL--------AEDHPQYRFRKLMN 264

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L + R  ++   ++      R+ ++S S  P   +     +    K+ ++    +D+ L
Sbjct: 265  MLGVSRGAIEPWCDMPAVSMARNTLLSLSLRPAPVTHAWLNE--GPKLNDLHGATADITL 322

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            IEA   R EA++IA+ LR + ++   K+ALIT DR L R+V   L R+ I  D SAG+PL
Sbjct: 323  IEAPTPRVEALAIALRLRQAAED-GVKAALITPDRMLTRQVTAALDRWNILPDDSAGMPL 381

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  +     +  D  A+ TL+KHPL   G    +       LE    R    
Sbjct: 382  QLSPPGRFLRHVAALFLRKLDAEALLTLLKHPLTHSGAGRNFHQLYTQRLEAEIRRHGLP 441

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              D   L  +        ++ +    W + + E                           
Sbjct: 442  YPDAEGLTEIAERTAKRMEDPSGFRDWIAWVGE-----------------------TFPG 478

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK--IIETGSCIK 599
            +   G   + D     +     +   +     +L ++      +    +           
Sbjct: 479  HDAPGERPLPDCVAAHLALANRIAAGQPADPDHLLWQHGAGIAAQGVMENLTEHAVHGGA 538

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             NA ++ D++  L+  E V+        + I GT+E+R+   D +ILGGLNEG WP+   
Sbjct: 539  MNAADYADLLGALLSQEEVREADTPHPDIMIWGTMEARVQGADLVILGGLNEGTWPEAPP 598

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R M+    L   E+ +G +AHD++ A  +  +  TR++R +    + SRWL RL
Sbjct: 599  PDPWLNRQMREKAGLLLPERRVGLSAHDYQQAIASPEVWITRAIRSDEAEMVPSRWLNRL 658

Query: 720  LVLGG-------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              L G        + +  +++RG  +LD  R L+   +     RP P PP  A+PR  S 
Sbjct: 659  GNLLGGLGETGGPEAWKAMQQRGSYWLDQVRALEAVERTAPAPRPSPRPPRAARPRKLSV 718

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +EIK LI DPYAVYA+  LKL  I    + PD   RG + H I+ + +K          +
Sbjct: 719  TEIKTLIRDPYAVYAKHSLKLRAINPLVQSPDAPVRGIVLHRIMEDFVKLVARDPARLTH 778

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI--PAKMA 890
              + ++     E+E   P    +W     +I+  F+  E         +           
Sbjct: 779  EALLEVAAQVLEEEAPWPAARAMWLARIDRIADWFIARERTRAEFSSPVAFEQGARGSHT 838

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
               +G  L+GFADRID    G V I DYKTG  P K+  Q+L D QL +EAA ++ G F 
Sbjct: 839  FADLGFTLSGFADRIDQTDDGDVLIYDYKTGTPPGKKE-QRLFDKQLLIEAAMVERGGFP 897

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
            ++    VA+  +I L  K        D      +E  ++ L  L  +++   +  Q F +
Sbjct: 898  EVGVAHVAHAAFIGLGSKPVEVPAPLD------EESPQEVLAGLHALLSRYLDEGQGFTA 951

Query: 1011 HLRLSEKSNIQSEYDHLARVAEWR 1034
              R+ +       YD LAR  EW 
Sbjct: 952  R-RMVQSDAFAGNYDQLARFGEWD 974


>gi|294084829|ref|YP_003551589.1| inactivated superfamily I helicase [Candidatus Puniceispirillum
            marinum IMCC1322]
 gi|292664404|gb|ADE39505.1| Inactivated superfamily I helicase [Candidatus Puniceispirillum
            marinum IMCC1322]
          Length = 1002

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 273/1042 (26%), Positives = 451/1042 (43%), Gaps = 60/1042 (5%)

Query: 8    VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67
            V+ I   +PF +E+   ++             +P  LA   + VP++RA Q LRS F+++
Sbjct: 6    VYNIPAGTPFAKELAKGVIQLA---------SSPTDLARAIVMVPSQRAAQALRSAFLDV 56

Query: 68   TGKKSTILPIIKSLGDVVEEKFTA-----DLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
            T  ++ +LP +  +GD+ ++             +  L P +S ++R + LA+L+  ++  
Sbjct: 57   TKGQAALLPRMIPIGDLADDVADVFPELYGGADTAMLPPAISPLRRQMMLAKLLGGFK-- 114

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
                              +   A+ LA  L  ++D +   +   + L  +  E+Y   W 
Sbjct: 115  ------------LGGQTPTFPQAMMLAHTLGQLLDQLYNVDANPDQLRDMLPERYSAHWQ 162

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPA 241
                 L I    W   L   N    V  +  L+RA  +       +  I+IAGSTGSI A
Sbjct: 163  DIIKLLTILVDNWPAILASENVMDGVDRRNRLIRARVKAWQDNPPETLIVIAGSTGSIIA 222

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  L+  V+N PNG +VLPGLD       W+ I+             S HPQY LA+LL 
Sbjct: 223  TRELIRCVSNLPNGHVVLPGLDSGAVPE-WDAISH-----------DSGHPQYQLAQLLH 270

Query: 302  FLDIKREDVKRL---GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
            F+DI   DV+              R  ++ + F P  T+      + E++    +     
Sbjct: 271  FMDITPLDVQNWVSNPESQPATSARRDLMREVFRPAPTTA-TWRQLSEDRPDLGRDALQG 329

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
            + +IE  + R EA  IA  LR +L+   + +ALIT DR+LA  V  EL R+ I ID SAG
Sbjct: 330  LQVIETHDRRAEAGLIAADLRATLEHEDQTAALITPDRHLAEAVIAELARWKITIDDSAG 389

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
              L T    + L  L+ A+ +    +A+  ++KHP A  G  +         +E + LRG
Sbjct: 390  TTLLTHRAGAFLQLLVEAMQENFAPLALLGVLKHPCAAGGMAQADFRAKVRHIEKLVLRG 449

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
             + +  +  L   +        ++  +  + +          V         +  L    
Sbjct: 450  QRPAPGLEGLAIAI-------GDDKDLRDFIAIHIAVPFTPLVDAWQAPAPTMASLARGL 502

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                      ++           +    D++    +LW  + GK  + L   ++E G   
Sbjct: 503  GQTAEMMAAQTM--CIPSDGPDTETRVADKNDGALHLWDNQGGKAAADLLKNLVEHGHDQ 560

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
              NA ++   + +++   TV    +    L ILG +ESR+   D LI+ G NEG WP   
Sbjct: 561  AVNATDFAQTLVQIMQDITVHAVQQSHPRLAILGAVESRMQTADHLIIAGFNEGNWPPQP 620

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
              +P+++  M+  + L         +AHD  MA     +  TR+ R+N+  TI SRWLQR
Sbjct: 621  QTDPWMNSDMRKAVGLPPHNWRTSLSAHDVYMAICNPKVTITRAQRQNDAATIPSRWLQR 680

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            + V+           RG    +W   L+  T     KRP P PPL A+PR +S +EI   
Sbjct: 681  MDVVLSALGIAKALDRGDEKFEWLAILNPKTIPNRIKRPAPKPPLSARPRKFSATEIDMW 740

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN-HLMKQ 837
            INDPYA+YA++ILKL  +    + PD   RGTLFHN++ +  +   + + P+     +  
Sbjct: 741  INDPYALYAKKILKLRQLDDIDRPPDAALRGTLFHNVLADFTRTFPSGSLPDTAYQDLLA 800

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK--MAIESIG 895
            I  +HF  +   P I   W   F  ++   +E E++ +  +  I         +   +  
Sbjct: 801  IGKTHFADQWATPDIRYFWWPRFEMVAGWIIETEKQRRDDLAFIHAEKKGSTILTGPAGP 860

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            + L+  ADR++  K G   I DYKTG  P K         QL +EA     G +      
Sbjct: 861  VELSARADRLEKTKDGTWHIIDYKTGIVPSKSKVASGRATQLLVEALIAWDGGYDDKPGC 920

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015
             +A + Y +L  +   + I +       D   E +   +  ++TL  + E  + +   + 
Sbjct: 921  DIAKMQYWKLSGRK--NKIGDIYDVLPDDGSPENTRDMMQSLITLFDDPEATYPAEPNIK 978

Query: 1016 EKSNIQSEYDHLARVAEWREEY 1037
             K +  + Y HLAR++EW++E 
Sbjct: 979  FKLS-YNPYRHLARISEWQQEG 999


>gi|27375864|ref|NP_767393.1| hypothetical protein bll0753 [Bradyrhizobium japonicum USDA 110]
 gi|27349002|dbj|BAC46018.1| bll0753 [Bradyrhizobium japonicum USDA 110]
          Length = 1048

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 304/1059 (28%), Positives = 485/1059 (45%), Gaps = 47/1059 (4%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             VF++  S PF R ++ ALL+G LV  F      P  LA  T+Y+PT+RA++ +R  F++
Sbjct: 2    RVFSVPISVPFLRTVVTALLDGRLVAGFEARR-EPARLADTTLYLPTRRAMRIVREIFLD 60

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTAD-------LLLSYNLNPPVSNIQRLLELARLILIW 119
                 + +LP I +LGD+ E++                ++ P +  ++R L LA+L+  W
Sbjct: 61   EMKADAVVLPRIVALGDIDEDELAFADEGEQFSGATPLDIPPRLGELERRLTLAQLVAAW 120

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179
                        P     +   PA+ + LA +LA +ID + T    W  L  L  ++   
Sbjct: 121  AK---------GPVLSPLVVGGPASTLALAGDLARLIDDMVTRGVDWSALDGLVPDQLDR 171

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
            +W  + +FL+IA   W   L E+N   P   +  L+ AEA+ L     GP+I AGSTGS+
Sbjct: 172  YWQHSLEFLRIARIAWPGHLAEINRIEPAARRDLLIAAEAKRLTAHPHGPVIAAGSTGSM 231

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN-ITSSNTTYSTHPQYSLAK 298
            PATA+ +  VA+ P+GA+VLPGLD  +    W TI          +    S HPQY++  
Sbjct: 232  PATAKFLHAVASLPHGAVVLPGLDTDLDEDAWRTIGGVRDALGKFAEHPASNHPQYAMHA 291

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK-IPNIQKCFS 357
            LL+   IKR DV+ L   +    GR ++ S+S  P   +++ +  + +      I    +
Sbjct: 292  LLERFGIKRGDVELL--QAPAEGGRDLLASESMRPSAKTEVWHDRLKQPDVAAKIAGGMT 349

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            ++A++EA N   EA++IAIA+R +     K +AL+T DR LARRV   LTR+ +  D S 
Sbjct: 350  NLAVVEAPNPEMEALAIAIAMREA-RHLDKSAALVTPDRALARRVMAALTRWDLAFDDSG 408

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L  T           A  K  +   +  ++KHPL + G        A   LEL  LR
Sbjct: 409  GDVLMETSAGVFARLAAEAATKGLEPPTLLAMLKHPLCRLGRAPDTWKAAIEGLELAVLR 468

Query: 478  GNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
            G +       L       +  +     ++ +  H    ++RL  ED +    L+D + Q 
Sbjct: 469  GTRPPAGTAGLLREFNRFREELAKLWRSEVSALHKAEPRARLKAEDLDRVQALIDALRQA 528

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            + P+ +   +K         ++        +  +  DE          E      +    
Sbjct: 529  LAPIESLAPSK-----PYDFAELAHRHREIMIELSRDEQGIPLAFEEREGLALAGAFDDL 583

Query: 591  IIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            +   T S +     ++ D+         V+ + +  + L I G LESRL+  D +I+GGL
Sbjct: 584  LRGGTTSGLIVPLPDYPDVFQTAFGDRAVRRRDKPGARLQIYGPLESRLMQADRIIVGGL 643

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
             EGVWP     +P+LSR M+ +L L   E+ IG +AHDF    G   +I T S +    P
Sbjct: 644  IEGVWPPAPRIDPWLSRPMRHELGLDLPERRIGLSAHDFAQLLGGDEVILTHSAKAGGAP 703

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
             +ASR+L RL  + G D +    + G+ Y+ +  +LD   +    K+P+P PP   +P  
Sbjct: 704  AVASRFLHRLEAVAGDDRWKAAIRAGEKYVRFADRLDQPDEVRPIKQPEPRPPRATRPLK 763

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S + I+  + DPY +YA+ IL+LD +          DRG+  H+ I E  ++   +   
Sbjct: 764  MSVTAIEDWLRDPYTIYAKHILRLDALDPVDMPLSAADRGSAIHDAIGEFTERYATRLPD 823

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
            +   +++ I + HF      P    +W   F +I+  F E E   +  +E I      ++
Sbjct: 824  DPARVLRAIGEKHFAPLMERPEARALWWPRFQRIARWFSEWETARRDVVEAITAETRGEI 883

Query: 890  AI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            +I         L+  ADRI+  + G   I DYKTG  P  +  +  + PQL+LEAA L+ 
Sbjct: 884  SITLDNERSFRLSARADRIERRQGGGYAILDYKTGQPPTGKQVRMGLSPQLTLEAAILRE 943

Query: 947  GSFSQIDCR-KVANLFYIRLKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEIV 998
            G F  ID    V+ L Y+RL                    +    D  + ++   L  ++
Sbjct: 944  GGFPDIDAGSSVSQLVYVRLSGNNPPGEERILELKYKQGDEPQPPDIAAAEARAKLEALI 1003

Query: 999  TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
               ++  Q + S L L   SN    YD LAR+ EW    
Sbjct: 1004 RAFEDENQAYTS-LNLPMWSNRYGTYDDLARIKEWSAAG 1041


>gi|91974685|ref|YP_567344.1| hypothetical protein RPD_0203 [Rhodopseudomonas palustris BisB5]
 gi|91681141|gb|ABE37443.1| DNA helicase/exodeoxyribonuclease V, subunit B [Rhodopseudomonas
            palustris BisB5]
          Length = 1049

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 302/1056 (28%), Positives = 492/1056 (46%), Gaps = 40/1056 (3%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             VF++ PS+PF R  I AL++G L+  F      P  LA  T+Y+PT+RA +  R  F++
Sbjct: 2    RVFSVPPSAPFLRTTIKALVDGELIAGFDAR-AKPERLAEATLYLPTRRAGRLARDIFLD 60

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLL----SYNLNPPVSNIQRLLELARLILIWRNK 122
            + G  + +LP I  LGDV E++             ++ P +  + R L+LA+LI +W   
Sbjct: 61   VLGADAVLLPRIVPLGDVDEDELAFAQAATGAADLDIPPALEGLPRRLQLAQLIAVWAKG 120

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            L    +   P+    +   PA+ + LA +LA +ID + T    W  L +L  + +  +W 
Sbjct: 121  L----RSGDPQQSPLVVGGPASTLALADDLARLIDDMATRGVDWAALDSLVPDAFDRYWR 176

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
            L  DFLKIA ++W + L E +   P   +  L+ AEA  L     GP+I AGSTGS+PAT
Sbjct: 177  LTLDFLKIAGQWWPQHLRESDQIEPAARRDLLIEAEAARLAAHRGGPVIAAGSTGSMPAT 236

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAKLLD 301
            A+L+  +A  PNGA++LPGLD  +    W  I   +       +     HPQ+++  LL 
Sbjct: 237  AKLLHAIARLPNGAVILPGLDTELDEQAWRLIGAVRDKQGQLISPPSPNHPQFAMHGLLT 296

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI-QKCFSDVA 360
             + ++R ++ RLG      +GR ++ S++  P   +   +  + + ++  + ++  + + 
Sbjct: 297  RMGLERREIVRLGEAVR--HGREVLASEAMRPSAATASWHERLADPEVDRLIEQGVNGLT 354

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            +IEA N   EA++IA+ALR + +   + +AL+T DR LARRV   L R+ + +D S G  
Sbjct: 355  VIEAPNSEIEALAIAVALREARER-GQSAALVTPDRALARRVVAALGRWNLPVDDSGGDS 413

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L  T           A     +   +  L+KHPL + G        A   LEL  LRG +
Sbjct: 414  LMETQAGIFARLAAEAALHGCEPATLLALLKHPLLRLGRAAGGWRHAIETLELALLRGTR 473

Query: 481  NSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
             +     L       ++ +      + +  H    ++RL +E  + A  L++ +   + P
Sbjct: 474  PAAGSEGLVKEFAKYRAELTRLKRGELSALHPSEPRARLGDESLDAAQELIEALRAALAP 533

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS-KII 592
            L T             +  + +     L  + +D           +    L +      +
Sbjct: 534  LETVGAEPLD------LCAFGRRHRDVLIALSIDHDEIAVAFEGSQGSALLKAFDDLAAV 587

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
            E  S +     ++ D+         V+      + L I G LE+RL   D +ILGGL EG
Sbjct: 588  EPLSGVLVPPHDYADVFETAFSDRIVRRPELAGAALRIYGPLEARLTQHDRVILGGLVEG 647

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
            VWP     +P+LSR M+ DL L   E+ IG +AHDF    G   +I T + +    P + 
Sbjct: 648  VWPPAPRIDPWLSRPMRHDLGLDLPERRIGLSAHDFAQLLGADEVILTYANKVGGAPAVV 707

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
            SR+L RL  + G   +  +K RGQ YLD+ + LD   +     +P P PP EA+P   S 
Sbjct: 708  SRFLHRLEAVTGKARWSAVKARGQSYLDYAQALDRPEQVTPIAQPAPRPPREARPLKLSV 767

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            + I+  + DPY +YA+ IL L  I          DRG+  H  + E  +   ++   +  
Sbjct: 768  TAIEDWLRDPYTIYAKFILGLSAIDPVDMPLSAADRGSAIHEALGEFTELFPDELPDDPA 827

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
             ++++I + HF      P    +W   F +I+  F   E+  ++   ++F      ++I 
Sbjct: 828  QVLREIGEKHFAPLMAHPEARALWWPRFARIAAWFGNWEQARRADGLRVFAERDGSLSIP 887

Query: 893  ---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
                    L+  ADRI+    G   I DYKTG+ P  +  +  + PQL+LEAA L+ G F
Sbjct: 888  LDGGRNFILSARADRIEHRADGSFAILDYKTGNPPTGKQVRMGLSPQLTLEAAILRDGGF 947

Query: 950  SQIDCR-KVANLFYIRLKQKFKID-------CITNDKKKYSADELSEKSLKNLIEIVTLL 1001
              ID    V+ L Y++L               I    ++ S D+ + ++   L  ++   
Sbjct: 948  EGIDAGSSVSELTYVKLSGNSPPGDECVLELRIERKDERQSPDDAAAEARSKLETLIRRF 1007

Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             +  QP+ + L LS  S     YD LAR+ EW    
Sbjct: 1008 DDEAQPYHA-LVLSMWSRRYGRYDDLARIKEWSAAG 1042


>gi|99082685|ref|YP_614839.1| hypothetical protein TM1040_2845 [Ruegeria sp. TM1040]
 gi|99038965|gb|ABF65577.1| hypothetical protein TM1040_2845 [Ruegeria sp. TM1040]
          Length = 977

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 274/1043 (26%), Positives = 445/1043 (42%), Gaps = 89/1043 (8%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            KP +F +     F R +   L         R+    P  LA V + + T+R  + +R  F
Sbjct: 8    KPRLFAVPCGVDFPRALYDGLTA-------RFADALPEELARVELILNTERMQRRVRQLF 60

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
                   + +LP I  L  + +E           L P +  ++R LEL++LI    +  P
Sbjct: 61   ---DAGPARLLPRISLLSGLNKEANLR------GLPPALPPLRRRLELSQLIAKLLDAQP 111

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184
            D+                A+   L+ +LA++ID +++E    + + AL        W  A
Sbjct: 112  DLAAR-------------ASLYDLSDSLAELIDEMQSEGVSTDQIRALDVSDMSGHWKRA 158

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244
             DF+ IA ++       L+ +     +  +M   AE        PII+AGSTGS   T  
Sbjct: 159  QDFIGIADQFVDMHEGALDVN--ARQRQVVMDLIAEWEQTPPTHPIILAGSTGSRGTTLL 216

Query: 245  LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
            LM  +A  P GA+VLPG D   P  +W ++        +       HPQY   KL+  LD
Sbjct: 217  LMEAIARLPQGAVVLPGFDFDQPEPVWESL--------TDGLVAEDHPQYRFHKLMRDLD 268

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
            ++  D+ R  + + +   R+ +IS +  P   +D   ++     + ++ +    + L+EA
Sbjct: 269  LRPSDICRWVDTTPQSPARNRLISLALRPAPVTDAWMSE--GPYLKDLDQATEALTLVEA 326

Query: 365  DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
             N R EA++IA+ LR + ++  + +ALIT DR L R+V   L R+ I  D SAG+PL  +
Sbjct: 327  ANPRSEALAIALRLRQAAED-GQTAALITPDRMLTRQVSAALDRWDILPDDSAGLPLQLS 385

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                 L  + +   +      + TL+KHPL   G            LEL   R      D
Sbjct: 386  PPGRFLRHVADLFCRPLQADMLLTLLKHPLTHSGAERGLHLLHTRDLELHMRRNGPPFPD 445

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
               L +    R                               +    +  +         
Sbjct: 446  CESLSAFGSTRD------------------------------LQPGWSDWLAQSFAGRDR 475

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEGKTLSSLFSKI-IETGSCIKANA 602
             G  ++SDW        + +           LW ++ G     +  ++  ++       A
Sbjct: 476  TGTRALSDWVSDLRETAEGIAAGSQVGGTGELWDKKAGNAARDVLEELQAQSPHGGDMTA 535

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             ++ D++  L+    V+ +     ++ I GTLE+R+   D +ILGGLNEG WP+    +P
Sbjct: 536  RDFADLLGALLSQGEVRDRDAPYGSIMIWGTLEARVQGADLVILGGLNEGSWPEAARPDP 595

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
            +L+R ++ +  L   E+ IG +AHDF+ A     +  TR++R     T+ SRWL R+  L
Sbjct: 596  WLNRKLRHEAGLLLPERRIGLSAHDFQQAVAAPEVWLTRAVRSEEADTVPSRWLNRMTNL 655

Query: 723  GGT-------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
             G             ++ RGQ +LDW   LD     P   RP P PP+ A+PR  + +EI
Sbjct: 656  LGGLPDQGGQAALSAMRMRGQVWLDWASVLDAPVPTPLSPRPSPRPPVAARPRRLTVTEI 715

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
             +LI DPYA+YA+ +L+L  +    ++PD   RGT+ H ++ + IK    +         
Sbjct: 716  PKLIRDPYAIYAKHVLRLKPVDPLLQEPDALLRGTIIHKVLEDFIKSAQEQPENLSARHF 775

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
                    E E   P    +W     K++  F+  E + QS           ++ ++ + 
Sbjct: 776  IDHARRVLETEVPWPVARTLWLTRLKKVAEDFVTGERQRQSRARPSGFEKSGQVRLDPLD 835

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
              +   ADRID+ + G + + DYKTGD P ++  QK  + QL +E A  + G+FS     
Sbjct: 836  FEIAAKADRIDVDERGLLHLYDYKTGDPPSEKQ-QKSFEKQLLIETAMAEQGAFSDYGAA 894

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015
            +V    YI LK          +      DE   K    L  +V    + EQ F S  R+ 
Sbjct: 895  RVERALYIGLK------PPVKEVAAPILDEPPAKVWAELRSLVEAYFDAEQGFSSR-RMV 947

Query: 1016 EKSNIQSEYDHLARVAEWREEYD 1038
             + +   +YDHLAR  EW    D
Sbjct: 948  HRDDFAGDYDHLARYGEWDRSSD 970


>gi|75674248|ref|YP_316669.1| hypothetical protein Nwi_0049 [Nitrobacter winogradskyi Nb-255]
 gi|74419118|gb|ABA03317.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 1053

 Score =  582 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 306/1058 (28%), Positives = 487/1058 (46%), Gaps = 40/1058 (3%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             V  +  S PF R +I AL++G L+E FR     P  LA  T+Y+PT+RA +  R  F++
Sbjct: 2    RVRNVPSSVPFLRAVITALVDGELIEGFRPR-AQPERLAEATLYLPTRRAGRMARDIFLD 60

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTAD-----LLLSYNLNPPVSNIQRLLELARLILIWRN 121
            +    + ILP I +LG + E++            +  L P +  + R L LA+LI  W  
Sbjct: 61   VLDTDAVILPRIVALGGIDEDELAFAQAVSLPPETLELPPALDGLARRLALAQLIDAWAR 120

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            +L   + D  P     +   PA+ + LA +LA ++D + T    W  L  L  E    +W
Sbjct: 121  RL--NLGDGEPARAPLVLGGPASTLTLAADLARLMDDMATRGVDWRALDGLVPEALDRYW 178

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
             +  DFLKIA  YW   L E     P   +  L+ AEA  L     GP+I AGSTGS+P+
Sbjct: 179  QITLDFLKIARDYWPAHLQETGRIEPAARRDRLIEAEAARLAAHHVGPVIAAGSTGSMPS 238

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT--EKSTNITSSNTTYSTHPQYSLAKL 299
            TA+L+  +A  P GA+VLPGLD  +    W  I       +        + HPQ++L  L
Sbjct: 239  TAKLLHAIATLPQGAVVLPGLDTDLDEEAWRLIGGVRDKASGAFITPPAAGHPQFALHGL 298

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN-IQKCFSD 358
            L    IKR +VK LG      YGR M+ S++  P + +   +T + E ++ + I     +
Sbjct: 299  LARFGIKRSEVKALGF--PAPYGREMLASEAMRPAEATAQWHTRLAEPEVADKIAAGLQN 356

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
            +A+I A N   EA+ IA+A+R +  +  K +AL+T DR LARRV   L R+ +  D S G
Sbjct: 357  LAVIAAANPEMEALGIAVAMREA-RDLNKTAALVTFDRALARRVMAALGRWNLAFDDSGG 415

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
             PL  T                 +   +  L+KHPL + G      SRA  ALEL  LRG
Sbjct: 416  DPLMDTPAGIFARLAAETACNGLEPPTLLALLKHPLCRLGRAAGGWSRAIIALELAILRG 475

Query: 479  NKNSYDIMDLKSLVL-------DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
             +       L                 + ++ H    ++ L  +  +    L+  +   +
Sbjct: 476  PRPPPGGKGLADEFARFCDERDQLDRGESSSLHRSEPRAALKPDHLDDISALIAALRDAL 535

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             PL     ++++    L++          ++++  D+       +    G+ L+  F  +
Sbjct: 536  APLEGDGASRSADFTLLAL-----QHRQTIESLSCDDEGVAVA-FDGRHGRALADAFDDL 589

Query: 592  IETG--SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            ++ G  S +     ++ +          V+     S++L I G LE+RL   D +ILGGL
Sbjct: 590  VDAGERSGLTVRIADYPETFEAAFGDRVVRRPQATSASLRIYGPLEARLTQCDRVILGGL 649

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
             EGVWP     +P+LSR M+ +L L   E+ IG +AHDF    G   +I + + +    P
Sbjct: 650  TEGVWPPAPPTDPWLSRPMRHELGLDLPERRIGLSAHDFTQLFGAEEVILSHAAKAAGAP 709

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
             +ASR+L RL  + G   + + K+ G  Y+ +   LD  ++     +P P PP  A+P  
Sbjct: 710  AVASRFLHRLEAVAGATRWTSAKQAGARYIQYAEALDRPSEVTPIAQPAPKPPRTARPTR 769

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S + I+  + DPY +YAR ILKL  +          DRG+  H+ + +  K+       
Sbjct: 770  LSVTAIEDWLRDPYTIYARYILKLLPLEAVDMPLSAADRGSAIHDALGDFTKRYPASLPD 829

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
            +   +++ I +S F      P    +W   F +I+  F E E   ++ + +I   +  K+
Sbjct: 830  DPEDVLRAIGESRFAPLMQRPEARALWWPRFQRIAAWFAEWEPTRRAHLVRIDAEVSGKI 889

Query: 890  AIE---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             I         L+  ADRI+ L  G   + DYKTG  P  +  +  + PQL+LE+A L+ 
Sbjct: 890  EIPIDGDRRFTLSARADRIEHLGGGRFAVLDYKTGSPPSSKQVRLGLSPQLTLESAILRN 949

Query: 947  GSFSQIDC-RKVANLFYIRL------KQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            G F+ I     V+ L Y+RL       +   +D         S D+ ++ +L+ L  ++ 
Sbjct: 950  GGFAGIPPGASVSELVYVRLSGNNPAGEPRPVDLDNGKTATRSPDQAADVALEELTALIR 1009

Query: 1000 LLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
               + +Q + S L L         YD LAR+ EW    
Sbjct: 1010 AFDDEQQGYAS-LDLPMWKARYGVYDDLARIKEWSAAG 1046


>gi|114705058|ref|ZP_01437966.1| hypothetical protein FP2506_08976 [Fulvimarina pelagi HTCC2506]
 gi|114539843|gb|EAU42963.1| hypothetical protein FP2506_08976 [Fulvimarina pelagi HTCC2506]
          Length = 1049

 Score =  582 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 350/1056 (33%), Positives = 537/1056 (50%), Gaps = 40/1056 (3%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            + N+F+I    PF   +  +LL+G L   +RYD  +PL LA   IYVPT+RA + L   F
Sbjct: 2    RANIFSIPLRCPFLPTLAASLLDGHLDVGYRYDG-DPLSLADTLIYVPTRRAARSLAFAF 60

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
                G  + ILP I+ +G+  E +    +       P +  ++R LELARL+  WR+   
Sbjct: 61   QARLGDGAAILPQIRPIGEGDEAELLHGVDSPMAFEPVIGELERRLELARLVRRWRSMTR 120

Query: 125  DII-KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183
                K L+      LP S A+A++LA +L  ++D IETE   +  L  L  E+   WW L
Sbjct: 121  QAELKALFGSDDAVLPASAADALYLAADLGTLLDEIETEGVPFSQLGQLAPEELAEWWRL 180

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIPAT 242
               FL I +++W E+L      S    +   ++ EA+ L      GP+I+AGST + P T
Sbjct: 181  TLTFLTIVTQHWPEQLKADGRISEARAKNDWLKNEADRLRDHPPTGPVILAGSTATAPQT 240

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
              LM  VAN   GA+VLPGLD  +  A ++ I                HPQY L ++LD 
Sbjct: 241  IALMRVVANMEKGAVVLPGLDLLLDQAAFSMIDRTLA------IASPGHPQYGLKRILDG 294

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            + I R+ V  L      +  R   +S++  P +T++       ++   N +     + LI
Sbjct: 295  ILIDRDSVGVL-ESDKHLIARERFLSEALRPAETTEHW----SKSGSANGEDALDGLTLI 349

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            EA   REEA++IA A+R +L ++K   ALIT DRNLARRV +EL RFGI  + SAG PL 
Sbjct: 350  EATEPREEALAIACAMRDALSDSKATCALITPDRNLARRVVIELERFGIRANDSAGRPLK 409

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
            +T   +++ +LL+  F   D + +  L+KHPL + G       RA  A+EL+ALRG+   
Sbjct: 410  STAPGTLVLTLLSVAFTPGDPIPLLALLKHPLVRLGMTSAEARRAARAIELIALRGSVEI 469

Query: 483  YDIMDLKSLVLDRIATQK--------------NNTHVPHWQSRLSEEDKELAVLLVDHIL 528
             D   L  +V  R+                  +   +      +S+ED+ELA        
Sbjct: 470  ADAAKLSEIVDRRLLGSARPVDDEAAAEVTKQDRIRLSRPAQLVSKEDRELARRFAQAFE 529

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
              I+PL+  +           ++D+T +    L+ +C DE+     L+ EE G  L    
Sbjct: 530  ASISPLIALRG-----EATRELADYTAVLTEVLETLCRDENGYPRELYAEEPGHALKDFL 584

Query: 589  SKIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
            S ++ +        A E  D++  L+   TV+P+   S+  F+ GTLE+RL + DT ILG
Sbjct: 585  SSLVASPRTGFDFPATELEDVVDALMASVTVRPRGGLSARAFVWGTLEARLQSVDTAILG 644

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
            GLNEG WP       FLSR+M+ D+ L   E+ IG AAHDF MA G R +I TRS +++ 
Sbjct: 645  GLNEGTWPAGAKNGAFLSRMMRRDIALDPPERRIGLAAHDFWMAMGARRVILTRSTKQDG 704

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
             PTIASRWLQR+  L G +   +LK+RG  YL   R+L+ +++     RP+P PP+E +P
Sbjct: 705  APTIASRWLQRIAALAGPERTGDLKRRGIVYLHAARRLEESSRTAIAARPEPKPPVEKRP 764

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
            R YS +E++ LI DPYA++A +IL+L+ +    + P   +RG+L+H I+++ ++  ++  
Sbjct: 765  RRYSVTEVETLIRDPYAIHATKILQLEPLDPLMRSPAAAERGSLYHAILSDFVQNGLDPM 824

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
                   + +I    F+KE LP  I+  W      I+  +L+ E    + +      I  
Sbjct: 825  ADAALDQLLEIARDRFDKEQLPAEIEAFWWPRMEAIASGYLDWERGRNADVAVRHAEIKG 884

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             + +  I + L G ADRID+++ G ++I D+KTG  P    A+ L+ PQ+ LE      G
Sbjct: 885  SITVTGIDVELVGKADRIDVMRDGSIEIIDFKTGTAPSVAQARSLLAPQMPLEGGMALRG 944

Query: 948  SFSQI-DCRKVANLFYIRLKQ-----KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
             F  + D  ++ +L Y+RL++     +      T   +     +LS K++     +    
Sbjct: 945  GFEDVKDADRIHDLTYVRLREHEVYPEGLAKPATKTAEAVDPMDLSVKAITKFESLAAKF 1004

Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            Q  E PF S  R +   +    YDHLAR  EW    
Sbjct: 1005 QKRETPFTSRFRPAYAGDFSGTYDHLARAREWAVAG 1040


>gi|316931472|ref|YP_004106454.1| double-strand break repair protein AddB [Rhodopseudomonas palustris
            DX-1]
 gi|315599186|gb|ADU41721.1| double-strand break repair protein AddB [Rhodopseudomonas palustris
            DX-1]
          Length = 1049

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 306/1056 (28%), Positives = 490/1056 (46%), Gaps = 40/1056 (3%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
            +VF++  S+PF R +I AL++G LV+ F      P  LA  T+Y+PT+RA +  R  F++
Sbjct: 2    HVFSVPSSAPFLRTVIAALVDGRLVDGFEAR-SAPERLADATLYLPTRRAGRMAREIFLD 60

Query: 67   ITGKKSTILPIIKSLGDVVEEKF----TADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
            + G  + +LP I +LGD+ E++      A  L    + P +  + R L LA+LI  W  +
Sbjct: 61   VLGADAVLLPRIVALGDIDEDELAFAQAASGLADLEIPPALDGLPRRLLLAQLIASWAAR 120

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            L        P     +   PA+A+ LA +LA +ID + T    W  L  L  + +  +W 
Sbjct: 121  LKPD----DPTQAPLVVGGPASALALADDLARLIDDMSTRGVDWSALETLVPDAFDRYWS 176

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
            L  DFLKIA   W E L E +   P   +  L+ AEA+ L     GP+I AGSTGS+PAT
Sbjct: 177  LTLDFLKIAGHAWPEYLKETDRIEPAARRDRLIDAEAQRLATQRSGPVIAAGSTGSMPAT 236

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAKLLD 301
            A+L++ +A  P+GA+VLPGLD  +  A W+ I   +             HPQY++  LLD
Sbjct: 237  AKLLTAIARLPHGAVVLPGLDVDLDDAAWDLIGGSRDRQGKLVTPPSPNHPQYAMHGLLD 296

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI-QKCFSDVA 360
             + + R DV++LG  +   +GR ++ S++  P   + + +  + +  +  +  +    + 
Sbjct: 297  RMGVTRRDVQQLG--TPARHGRELLASEALRPSSATAVWHDRLKDADVDRLIGEGIGGLT 354

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            LIEA N   EA++IA+ LR + ++  K +AL+T DR LARRV   L R+ + +D S G  
Sbjct: 355  LIEAPNSEAEALAIAVVLREAREQ-GKTAALVTPDRALARRVVAALGRWHLPVDDSGGDS 413

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L  T           A  +  +   +  L+KHPL + G  +    RA   LEL  LRG +
Sbjct: 414  LMETQPGIFARLAAEAALEGCEPATLLALLKHPLLRLGRADHGWRRAIETLELALLRGPR 473

Query: 481  NSYDIMDLKS-------LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                   L          +      + +  H    ++RLSE   + A  L+  +   + P
Sbjct: 474  PPAGCHGLAKEFAIFRIELAKLKRGEASALHPSEPRTRLSEPSLDDAQALIAQLEAALAP 533

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS-KII 592
            L T+  +         + +        L+ +  D           +    L +      +
Sbjct: 534  LETFGPSPLD------LCEIGARHRDVLKALTTDHEGIAEAFEGPQGSALLRAFDDLAAV 587

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
               S +   A ++ ++         V+      + + I G LE+RL   D ++LGGL EG
Sbjct: 588  GPASGVLVAARDYGEVFETAFGDRVVRRPELAEAPIRIYGPLEARLTQQDRVVLGGLVEG 647

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
            VWP     +P+LSR M+ +L L   E+ IG +AHDF  A G   +    + +    P +A
Sbjct: 648  VWPPAPRIDPWLSRPMRHELGLDLPERRIGLSAHDFAQALGADEVFIAHAAKVGGAPAVA 707

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
            SR+L RL  + G D +  +K RGQ YLD+T +LD         +P P PP  A+P     
Sbjct: 708  SRFLHRLEAVAGEDRWKAMKARGQIYLDYTHELDRPESVTPIAQPAPRPPRIARPLKLPV 767

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            + I+  + DPY +YA+ IL+L  +          DRG+  H  + E  ++  +    +  
Sbjct: 768  TAIEDWLRDPYTIYAKYILRLSPLDPVDMPLSGADRGSAIHAALGEFTERYQDAMPDDPA 827

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
              ++QI   HF           +W   F +I+  F   E++ ++ + ++       + I 
Sbjct: 828  AALRQIGQKHFAPLMDHAEARALWWPRFLRIATWFGAWEQQRRTGVVQVQAERRGTLMIP 887

Query: 893  SIG---IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
              G     L+  ADRI+    G   I DYKTG  P  +  +  + PQL+LEAA L+ G F
Sbjct: 888  LGGERNFELSARADRIERRDDGSYAILDYKTGHPPTGKQVRMGLSPQLTLEAAILRDGGF 947

Query: 950  SQID-CRKVANLFYIRLKQKFKID-------CITNDKKKYSADELSEKSLKNLIEIVTLL 1001
              I     V+ L Y++L               I    +    D+ ++++   L  +V   
Sbjct: 948  EGIPAAASVSELTYVKLSGNTPPGDERVLELKIERKDEPQHPDDAADEARAKLEGLVRRF 1007

Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            ++ +Q + S L LS  S     YD LAR+ EW    
Sbjct: 1008 EDEKQSYRS-LVLSMWSQRYGTYDDLARIKEWSAAG 1042


>gi|85705746|ref|ZP_01036843.1| hypothetical protein ROS217_10612 [Roseovarius sp. 217]
 gi|85669736|gb|EAQ24600.1| hypothetical protein ROS217_10612 [Roseovarius sp. 217]
          Length = 979

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 261/1045 (24%), Positives = 437/1045 (41%), Gaps = 87/1045 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             +  P ++ I P   F R ++  L         R+    P  LA V + V T+R  + +R
Sbjct: 4    PSDAPRLYGIPPGVDFPRALVGGL-------RARHAGQPPETLARVQLIVNTRRMARRIR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              F +       +LP I  L D+ E      L    ++   V  ++R LEL RLI    +
Sbjct: 57   ELFDQ---GPPCLLPRISLLTDLGE------LWDLAHIPDAVPPLRRRLELVRLITKLLD 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              PD+                +    L+ +LA ++D +  E      + AL        W
Sbjct: 108  SAPDLAPR-------------SAIYDLSDSLAGLMDEMHGEGVSPHAIEALDVSDQSGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                 FL I   Y+       +  +    ++ + R  A       K P+I+AGSTGS  A
Sbjct: 155  ARIKSFLGIVRHYFEAGGAAPDVET--RQRLVIERLAALWDEMPPKHPVILAGSTGSRGA 212

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  LM  VA  P GA+VLPG D   P  +W+ + +   +          HPQY   ++  
Sbjct: 213  TQHLMQAVARLPQGAVVLPGFDFDTPAPVWDALDDAMLS--------EDHPQYRFCRVAV 264

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
               I   D++   +       R+ ++S +  P   +D    D     + +I    +DV L
Sbjct: 265  GAGITPVDIRPWSDTRPANPARNALVSLALRPAPVTDQWLRD--GPHLRDITGAMADVTL 322

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA ++R+EA++IA+ LR + ++  + +ALIT DR L R+V   L R+ I  D SAG+PL
Sbjct: 323  VEAPSQRQEALAIAMRLRQAAED-GRTAALITPDRTLTRQVTAALDRWDILPDDSAGLPL 381

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  + +         ++ TL+KHPLA  G       R    LEL   R    
Sbjct: 382  HLSPPGRFLRHVADLFRNRLSAESLLTLLKHPLAHQGAERGTHLRLTRELELHLRRHGPP 441

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                  L++                      + +  +L    V+ +  C           
Sbjct: 442  YPTEDSLRAW--------------------GAGQRDQLIPDWVNWLCDCF--------VN 473

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP-NLWFEEEGKTLSSLFSKI-IETGSCIK 599
                G + + +     +   + +    H      LW ++ G+      +++  E      
Sbjct: 474  RDYSGEMPLENSVAAHLELAEQIAHGCHGTGSGTLWLKDAGQEAQKAVTELQTEAHHAGT 533

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +A ++  +  +++    V+  ++    + I GTLE+R+   D LIL GLNEG WP +  
Sbjct: 534  LSASDYSSLFHKVLSAREVRNPVDPHPHILIWGTLEARVQGADLLILAGLNEGSWPVSPK 593

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R ++  + L   E+ IG +AHDF+ A     +  TRS+R  +  T+ SRWL R+
Sbjct: 594  ADPWLNRALRHQVGLLLPERRIGLSAHDFQQAIAAPEVWLTRSVRSADAETVVSRWLNRI 653

Query: 720  LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
            L L       GG    D ++ RG  +LD    L+   + P   RP P PP+  +P   + 
Sbjct: 654  LNLLSGLPDQGGQAAIDAMRARGHVWLDHAAALEEPGEAPRAARPAPAPPVAVRPDHLTV 713

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +EIK+LI DPYA+YAR ILKL  +    + PD   RGT+ H I+   I++ +       +
Sbjct: 714  TEIKRLIRDPYAIYARHILKLRPLDPLMRAPDALLRGTVLHEILEGFIRETLEHPAQCTH 773

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
              + +  ++   +         +W     +++  F++ E + ++    ++     +  + 
Sbjct: 774  ATLMRHAETVLAQNVPWAEARALWLARLERVADWFIDTEAQRRALAHPVYFEAAGRATLP 833

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             +G  L+  ADR+DL   G + I DYKTG  P  +  Q   D QL LEAA      F  +
Sbjct: 834  DLGFTLSAKADRLDLDDLGRLHIYDYKTGAPPSTKE-QTSFDKQLLLEAAIATRSGFEGM 892

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
               +VA   +I L    K      D +         K       +++   + +  + +  
Sbjct: 893  GPTRVARAVFIGLGSTPKELDAPLDTEPPD------KIWSEFHALMSAYFDPDMGYTARR 946

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037
                  +   +YD LAR  EW    
Sbjct: 947  APRMAEDD-GDYDQLARYGEWEMTD 970


>gi|259417393|ref|ZP_05741312.1| double-strand break repair protein AddB [Silicibacter sp. TrichCH4B]
 gi|259346299|gb|EEW58113.1| double-strand break repair protein AddB [Silicibacter sp. TrichCH4B]
          Length = 977

 Score =  579 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 266/1043 (25%), Positives = 447/1043 (42%), Gaps = 89/1043 (8%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
             P +F +     F R ++  L+        R+    P  LA V + + T+R  + +R  F
Sbjct: 8    TPRLFAVPCGVDFPRALVDGLIQ-------RFADQPPEALARVELILNTERMQRRVRQLF 60

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
                   + +LP +  L  + ++           L P +  ++R LEL++LI    +  P
Sbjct: 61   ---DSGPARLLPRVSLLSGLSKQANLR------GLPPALPPLRRRLELSQLIAKLLDAQP 111

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184
            D+                ++   L+ +LA++ID +++E    + + AL        W  A
Sbjct: 112  DLAAR-------------SSLYDLSDSLAELIDEMQSEGVTTDQIRALDVSDMSGHWKRA 158

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244
             DF+ IA ++       L+ +     +  ++    E      + PII+AGSTGS   T  
Sbjct: 159  QDFIGIADQFVEMHEGALDVN--ARQRQVVLDLITEWEHTPPQHPIILAGSTGSRGTTLL 216

Query: 245  LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
            LM  +   P GA+VLPG D   P  +W+++ +              HPQY   KL+  LD
Sbjct: 217  LMEAITRLPQGAVVLPGFDFDQPEDVWDSLNDGL--------VAEDHPQYRFFKLMRDLD 268

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
            ++  D++   +       R+ +IS +  P   +D   T+     + ++ +    + LIEA
Sbjct: 269  LRPRDIRAWVDTKPVSPPRNKLISLALRPAPVTDAWMTE--GPHLTDLDQATDALTLIEA 326

Query: 365  DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
             + R EA++IA+ LR + ++  + +ALIT DR L R+V   L R+ I  D SAG+PL  +
Sbjct: 327  ASPRSEALAIALRLRQAAED-GQTAALITPDRMLTRQVSAALDRWNILPDDSAGLPLQLS 385

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                 L  + +   +      + TL+KHPL+  G            LEL   R      D
Sbjct: 386  PPGRFLRHVADLFCRPLQADMLLTLLKHPLSHSGEERGLHLLHTRDLELHMRRYGPPFPD 445

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
               L +    R                               +    +  +         
Sbjct: 446  HESLSTFGTTRD------------------------------LQPGWSDWLAQSFAGREQ 475

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEGKTLSSLFSKI-IETGSCIKANA 602
             G  ++SDW     T  + +           LW ++ G+    +F ++  E     +  A
Sbjct: 476  TGLRALSDWVADLRTTAEFIAAGSQTGGAGELWDKKAGRKALEIFQELEAEAPHGGEMTA 535

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             +  D++  L+    V+ +     ++ I GTLE+R+   D +ILGGLNEG WP+  + +P
Sbjct: 536  RDLADLLGALLSQGEVRDRDAPYGSIMIWGTLEARVQGADLVILGGLNEGSWPEAASPDP 595

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
            +L+R ++ +  L   E+ IG +AHDF+ A     +  TR++R     T+ SRWL R+  L
Sbjct: 596  WLNRKLRHEAGLLLPERRIGLSAHDFQQAVAAPEVWLTRAIRSEEADTVPSRWLNRMTNL 655

Query: 723  GGT-------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
             G             ++ RGQ +LDW   LD     P   RP P PP+ A+PR  + +EI
Sbjct: 656  LGGLPDQGGQAALSAMRMRGQVWLDWASVLDAPLPSPLSPRPSPRPPVAARPRRLTVTEI 715

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
             +LI DPYA+YA+ +L+L  +    + PD   RGT+ H ++ + IK    +         
Sbjct: 716  PKLIRDPYAIYAKHVLRLKPVDPLLQKPDALLRGTIIHKVLEDFIKSAQEQPETLTARAF 775

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
             +      E E   P    +W     K++  F+  E + Q            ++ ++ + 
Sbjct: 776  IEQSQRVLEAEVPWPVARTLWLTRLKKVAEDFVAGERERQLRARPSGFEKSGQVRLDPLD 835

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
              +   ADRID+ + G + + DYKTGD P ++  QK  + QL +E A  + G+F      
Sbjct: 836  FEIAAKADRIDVDERGMLHLYDYKTGDPPSEKQ-QKSFEKQLLIETAMAEQGAFEDYGAA 894

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015
            +V    YI LK          +      DE   K  + L  ++    + EQ + S  R+ 
Sbjct: 895  RVERSLYIGLK------PPVKEVAAPILDEPPAKVWEELRSLIEAYFDAEQGYSSR-RMV 947

Query: 1016 EKSNIQSEYDHLARVAEWREEYD 1038
             + +   +YDHLAR  EW    D
Sbjct: 948  HRDDFAGDYDHLARYGEWDRSSD 970


>gi|86747754|ref|YP_484250.1| hypothetical protein RPB_0628 [Rhodopseudomonas palustris HaA2]
 gi|86570782|gb|ABD05339.1| DNA helicase/exodeoxyribonuclease V, subunit B [Rhodopseudomonas
            palustris HaA2]
          Length = 1048

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 297/1049 (28%), Positives = 471/1049 (44%), Gaps = 27/1049 (2%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             VF++ PS+PF R  I AL++G L+E F      P  LA  T+Y+PT+RA +  R  F++
Sbjct: 2    RVFSVPPSAPFLRTTIEALVDGRLIEGFDAR-AKPERLAEATLYLPTRRAGRLARDIFLD 60

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLL----SYNLNPPVSNIQRLLELARLILIWRNK 122
            + G  + +LP I  LGDV E++             ++ P +  + R L LA+LI  W   
Sbjct: 61   VLGTDAVLLPRIVPLGDVDEDELAFAQAATGAADLDIPPALDGLPRRLLLAQLIAAWAKG 120

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            L    +   P+    +   PA+ + LA +LA +ID + T    W  L  L  + +  +W 
Sbjct: 121  L----RPGDPQQSPLVVGGPASTLALADDLARLIDDMATRGVDWAALDMLVPDAFDRYWR 176

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
            L  DFLKIA ++W   L E +   P   +  L+ AEA  L     GP+I AGSTGS+PAT
Sbjct: 177  LTLDFLKIAGQWWPLHLRETDRIEPAARRDLLIEAEAARLAAHRGGPVIAAGSTGSMPAT 236

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAKLLD 301
            ARL+  +A  P+GA+VLPGLD  +  A W  I           +     HPQ+++  LL 
Sbjct: 237  ARLLHAIAQLPHGAVVLPGLDTELDEAAWQMIGAVHDKQGKLISPPSPNHPQFAMHGLLA 296

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI-QKCFSDVA 360
             + ++R DV RLG      +GR ++ S+   P   +   +  + +  I  +       + 
Sbjct: 297  RMGLERRDVLRLGEGER--HGREVLASEMMRPSSATAAWHDRLADPAIDQLIGDGTHGLT 354

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            LIEA N   EA++IA+ LR + +   + +AL+T DR LARRV   L R+ + +D S G  
Sbjct: 355  LIEAPNSEIEALTIAVVLREARER-GQSAALVTPDRALARRVVAALGRWKLPVDDSGGDS 413

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L  T                 +   +  L+KHPL + G        A   LEL  LRG +
Sbjct: 414  LMDTQAGIFARLAAETALHGCEPATLLALLKHPLLRLGRAAYGWRSAIETLELALLRGTR 473

Query: 481  NSYDIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
             +     L       R    K N+       R     +     L +     +        
Sbjct: 474  PAAGTEGLAKEFARYRAELTKLNSGELSALHRAEPRARLGDEALDEAHALIVALRAALAP 533

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS-KIIETGSCI 598
             ++     + +  + +     L  + +D           +    L +      +E  S +
Sbjct: 534  LESVGVEPIDLCAFGQRHRAVLIALSIDHDDNAVAFEGPQGSALLKAFDDLAEVEPLSGV 593

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                 ++ ++         V+      + L I G LE+RL   D ++LGGL EGVWP   
Sbjct: 594  MVPPHDYPELFETAFSDRIVRRPELAGAALRIYGPLEARLTQHDRVVLGGLVEGVWPPAP 653

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
              +P+LSR M+ +L L   E+ IG +AHDF    G   +I + + +    P +ASR+L R
Sbjct: 654  RIDPWLSRPMRHELGLDLPERRIGLSAHDFAQLLGANEVILSHAAKVGGAPAVASRFLHR 713

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            L  + G   + ++K RG  YLD+   LD   +     +P P PP EA+P   S + I+  
Sbjct: 714  LEAVAGKARWSDIKARGATYLDYALALDRPDQVTPIAQPAPKPPREARPLKLSVTAIEDW 773

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
            + DPY +YA+ IL L  +          +RG+  H  + +  ++  +    +   L+++I
Sbjct: 774  LRDPYTIYAKFILGLSALDPVDMPLSAANRGSAIHEALGDFTERFPDALPDDPAGLLREI 833

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE---SIG 895
             + HF      P    +W   F +I+  F   E+  ++   ++F      ++I       
Sbjct: 834  GEKHFAPLMDHPEARALWWPRFARIAAWFGNWEQGRRADGRRVFAERDGSLSIPLDGGRN 893

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC- 954
              LT  ADRI+    G   I DYKTG+ P  +  +  + PQL+LEAA L+ G F  ID  
Sbjct: 894  FVLTARADRIEHRPDGSYAILDYKTGNPPSSKQVRLGLSPQLTLEAAILRDGGFQDIDAG 953

Query: 955  RKVANLFYIRLKQKFKIDC------ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
              V+ L Y++L                 ++   S D+ + ++   L  +V    +  QP+
Sbjct: 954  ASVSELMYVKLSGNSPPGRELPVKLAVGNETPQSPDDAAIEARAKLAALVRQFDDEAQPY 1013

Query: 1009 ISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             + L LS  +     YD LAR+ EW    
Sbjct: 1014 HA-LVLSMWTQRYGRYDDLARIKEWSAAG 1041


>gi|299133348|ref|ZP_07026543.1| double-strand break repair protein AddB [Afipia sp. 1NLS2]
 gi|298593485|gb|EFI53685.1| double-strand break repair protein AddB [Afipia sp. 1NLS2]
          Length = 1055

 Score =  576 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 297/1057 (28%), Positives = 470/1057 (44%), Gaps = 36/1057 (3%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             V  I  S+PF R ++ AL++G L++ FR     P  LA  T+Y+PT+RA +  R  F++
Sbjct: 2    RVSNIPSSAPFLRTLLSALVDGRLIDGFRARE-APERLAQATLYLPTQRACRMAREIFLD 60

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-----LNPPVSNIQRLLELARLILIWRN 121
            + G+ + +LP I +LG V E++       +       +   +  + R L L RL+  W  
Sbjct: 61   VMGQDAVLLPRIVALGHVDEDELDFARGEAVEFFSLAVPEALDGLPRRLVLMRLVDAWAK 120

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            +L        P     +   PA+ + LA +LA +ID + T    W  L  L  +    +W
Sbjct: 121  RLGSRELAAAP----LVAGGPASTLALADDLARLIDDMTTRGVDWSALDNLVPDDLDRYW 176

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
             L  DFLKIA   W   L E N   P   +  L+  EA  +     GP I AGSTGS+P+
Sbjct: 177  QLTLDFLKIAKDAWPAYLGEQNLIEPARRRDLLIETEAARIATLP-GPFIAAGSTGSMPS 235

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAKLL 300
            TA+ +  +A HP GA+VLPGLD  + +  W  I   + +    +    S+HPQY+L  LL
Sbjct: 236  TAKFLHAIAKHPQGAVVLPGLDIDLDSESWRAIGGIRDSEGRFTEHPLSSHPQYALHGLL 295

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE-NKIPNIQKCFSDV 359
            + L ++R DV  L       +GR ++ S++  P   +   +  + E +    I   F  +
Sbjct: 296  ELLGLERRDVIPL--AEPASHGRELLASEAMRPAAETAQWHDRLAEQDVAARIASGFETL 353

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
             +IEA N   EA++IA+A+R +  +  K +AL+T DR LARRV   L R+ +  D S G 
Sbjct: 354  TVIEAANPEMEALAIAVAMREA-RQKNKTAALVTPDRALARRVMAALGRWKLAFDDSGGD 412

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
             L  T            I        +  L+KHPL + G  E   ++  + LEL  LRG 
Sbjct: 413  SLMDTPAGIFARIAAETITTGLSPPTLLALLKHPLLRLGQAEGAWTKTVHDLELAVLRGT 472

Query: 480  KNSYDIMDLKSLVLD-------RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
            + +     L++               + +  H    + RL++ D +    L+  + + +T
Sbjct: 473  RPAPGCEGLQAAFAWFVDEWGKARRKEHSALHRSEPRCRLTQGDIDGIARLLVALTEALT 532

Query: 533  PLVTYKTNKNSTCGNLSI-SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
            PL       +       +  +      T                  +   + L       
Sbjct: 533  PLENIARGAHDLATLAQLHRETLIRLSTSDDGRIAVFGGHDGQQLAQAFDELLLPSGDAT 592

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                + I     ++ D+         V+    + ++L I G LE+RL   D +ILGGL E
Sbjct: 593  SPAQTHIALEIADYPDLFATAFASGMVRRPQNEDASLRIYGLLEARLTQCDRVILGGLVE 652

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
            GVWP     +P+LSR M+ DL L   E+ IG  AHDF    G   +I T + +    P++
Sbjct: 653  GVWPPAPRIDPWLSRPMRHDLGLDLPERRIGLTAHDFAQLLGAEDVILTHAAKAGGAPSV 712

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            ASR+L R+  +   + +D   +RG  Y+ +   LD+        +P P PP+  +P   S
Sbjct: 713  ASRFLHRMKAIAKPEAWDAALERGARYIRYAEALDHPDSIQPIAQPAPKPPVTLRPLQMS 772

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             +EI+  + DPY ++A+RILKL  +          DRG+  HN + +  +         I
Sbjct: 773  VTEIEDWLRDPYTIFAKRILKLTPLDPIDLPLTAADRGSAIHNALGDFTEAHSKNLPGNI 832

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
               ++   + HF      P    +W   F +I+  F   E K +  I +I   +  ++ I
Sbjct: 833  AAELRSFGERHFAALMEHPEARALWWPRFLRIAEWFAGWEIKRREDITEIAAELRGEIPI 892

Query: 892  E---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                     L+  ADRI+        I DYKTG  P  +  +  + PQL+LEAA L+ G 
Sbjct: 893  PLANGRRFILSARADRIEYRSDRTFAIVDYKTGTPPSGKQVRLGLAPQLTLEAAILRGGG 952

Query: 949  FSQIDC-RKVANLFYIRLKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEIVTL 1000
            F        V+ L Y+RL               I    +    D+ ++++L  L  ++  
Sbjct: 953  FKPFPARASVSELVYVRLNGNNPAGEEKIVDLRIARGNEPQLPDDAADEALAKLTALIKK 1012

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             +N EQ + S L L+  SN    YD LAR+ EW    
Sbjct: 1013 FENPEQAYTS-LDLAMWSNRYGTYDDLARIKEWSVAG 1048


>gi|84514937|ref|ZP_01002300.1| hypothetical protein SKA53_11973 [Loktanella vestfoldensis SKA53]
 gi|84511096|gb|EAQ07550.1| hypothetical protein SKA53_11973 [Loktanella vestfoldensis SKA53]
          Length = 974

 Score =  576 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 264/1047 (25%), Positives = 447/1047 (42%), Gaps = 95/1047 (9%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P +F       + + ++  L+        R   + P   A V IYV T R  + +R
Sbjct: 4    PTTTPRIFCEPCGVDYAKGLVTGLMA-------RAQHMPPEDFARVEIYVNTARMQRRIR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
            + F       + +LP I+ + D+  +       +S ++ P ++ +QR LEL++L+     
Sbjct: 57   AMF---DDGPALLLPRIRLVTDLARD------PISKDVPPAIAPLQRRLELSQLVAQLLQ 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              PD+                A    L+ +LA ++D ++ E    + +  L        W
Sbjct: 108  SEPDLAPR-------------AALYDLSDSLASLMDEMQGEGVSPDAIAKLDVSDQSGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A  FL I ++++          +    ++ +    A         P+I+AGSTGS  A
Sbjct: 155  ARAQKFLTIIAQFFD---TTTQPDTEARQRLVIETLAARWADAPPDHPVIVAGSTGSRGA 211

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            TA  M  VA  P GAIVLPG D  +P  +W+ + +  T+          HPQY   +L+D
Sbjct: 212  TALFMQAVAKLPQGAIVLPGYDTDLPDTVWSAMDDGLTH--------EGHPQYRFKRLMD 263

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             +     DV R  +++ +   R+ ++S S  P   ++    +     +  +      + L
Sbjct: 264  LIGFGPADVARWSDLAPQRPARNRLVSLSLRPAPVTNQWLQE--GPDLGCLIAATEGLTL 321

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA + R EA +IA+ LR ++ ++   +ALI+ DR L R+V   L R+ I  D SAG PL
Sbjct: 322  LEAASPRAEAEAIALRLRQAV-QDGITAALISPDRMLTRQVTAALDRWDIKPDDSAGTPL 380

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK-FGFPEKYLSRAKNALELVALRGNK 480
              +     L  + +         A+ TL+KHPL            R  + LEL   +   
Sbjct: 381  QLSPPGRFLRHVADLFGTQLTGEALLTLLKHPLCHSDNADRGDHLRMTHDLELDLRKYGP 440

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                   L      R   Q                           + + +T L T    
Sbjct: 441  PFPTADTLLGWASTRADRQP----------------------WAQWVAELVTGLDTV--- 475

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN-LWFEEEGKTLSSLFSKII-ETGSCI 598
                 G+  ++D     +T  ++ C          LW E  G+    + + +    G+  
Sbjct: 476  -----GDKHLTDHLDAHLTLAESFCAGPALPGAGGLWDEAAGREAQRICTDLRTHAGAGG 530

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
              +  ++  +  +++    V+ +      + I GTLE+R+   D  ILGG+N+GVWP+  
Sbjct: 531  VMSPRDYAALFGKILSAGVVRDRDAGHPQILIWGTLEARVQGADLTILGGMNDGVWPEAP 590

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
            A +P+L+R+M++   L   E+ +G +AHD++ A   R +  TR+ R ++  TI SRWL R
Sbjct: 591  APDPWLNRMMRAQAGLLLPERRVGLSAHDYQQAVAGREVWITRAKRSSDAETIPSRWLNR 650

Query: 719  LLVLG-------GTDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRTY 770
            L  L        G +  D ++ RG  +L    KL          KRP P PP+ A+P  +
Sbjct: 651  LTNLLGGLPDQNGPEALDRMQARGAAWLAMAAKLSAPGADVAKVKRPAPCPPVAARPNRF 710

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S ++IK LI DPYA+YAR++L+LD +       D   RG + H I+ E +++    +  +
Sbjct: 711  SVTQIKTLIRDPYAIYARKVLRLDPLDPLTPSADAPLRGVIIHGILEEFVRQNHAPDDLD 770

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                +  I   HF ++   P     W   F   + +F + E    +  +   V    K+ 
Sbjct: 771  A---LLAIATRHFTEKCPWPTHRAQWMARFALAADAFCKAEVGRHALSDTRLVEQEGKLL 827

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            I  + + LT  ADRIDL  SG   + DYKTG  P K   +K  D QL LE A ++ G F 
Sbjct: 828  IPDVEVTLTCKADRIDLTPSGTAILYDYKTGTMPTKPQQEK-FDKQLLLEVAMVERGGFE 886

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
             +   +V +  ++ +K   K             D  ++ ++  L  +    +  +  + +
Sbjct: 887  GVGPVQVDDAQFVSIKPDAKTVLAPIS------DNPTDTTMAELTALFEHWRRADSGYTA 940

Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEY 1037
               L  K ++ S YDHL+R  EW    
Sbjct: 941  RYALFSKKDVGS-YDHLSRFGEWDSSD 966


>gi|260429437|ref|ZP_05783414.1| double-strand break repair protein AddB [Citreicella sp. SE45]
 gi|260420060|gb|EEX13313.1| double-strand break repair protein AddB [Citreicella sp. SE45]
          Length = 977

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 276/1046 (26%), Positives = 462/1046 (44%), Gaps = 90/1046 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             ++ P VF +AP   F   ++  L         R     P  +A V + V T R  + +R
Sbjct: 4    PSETPRVFALAPGVDFPAALVAGLKQ-------RMAGQPPEAMARVELIVNTTRMARRIR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              F       +T+LP I+ L ++       D +   +L  PVS ++R LEL  L+    +
Sbjct: 57   QLF---DAGPATLLPRIRLLTEIA------DPIALADLPAPVSPLRRRLELTGLVSKLLD 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              PD+                     LA +LA ++D ++ E    +D+  L        W
Sbjct: 108  AQPDLAPR-------------TALFDLADSLATLMDEMQDEGVSPDDIAQLDVSDESGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A  F  I  +Y+       + +     ++AL +   +  +     P+I+AGSTGS   
Sbjct: 155  QRALSFFNIVQRYFKTGEEAPDVN--AFRRLALEQRLKDWEISPPSHPVILAGSTGSRGG 212

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T RLM+ VA  P GA+VLPG D   P ++W+ +T+  +           HPQ+  A+L+ 
Sbjct: 213  TNRLMNAVARLPQGALVLPGFDFDTPASVWDGLTDALSG--------EDHPQFRFARLMH 264

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L ++ +D+ R    +    GR+ ++S +  P   +D    +     +P++ +  S++ L
Sbjct: 265  GLGLRPDDIARWSGDAAPNDGRNRLVSLALRPAPVTDQWRDE--GPSLPDLTEATSELTL 322

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA ++R+EA +IA+ LR + ++    +ALIT DR L R+V   L R+GI  D SAG PL
Sbjct: 323  VEAASQRDEATAIALRLRQAAED-GVTAALITPDRMLTRQVTAALDRWGILPDDSAGTPL 381

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              T     L  +     +     A+ TL+KHPL   G       RA   LEL     +  
Sbjct: 382  QLTPPGRFLRHVSTLFQQDLTAEALLTLLKHPLTHSGHERGEHLRATRELELHIRNKSWP 441

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                 +L++                         + E      D +         +    
Sbjct: 442  YPQPDNLRAW-----------------------GEAEGFGPWADWVAASFCQPPVH---- 474

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKA 600
                G   ++DW  L V   + +          LW E  G+   +    +  E G     
Sbjct: 475  ----GTHLLADWLDLHVARAEAIAAGPMADDSELWKEAAGRKTRATVDGLRDEAGYGTDL 530

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            +A ++ D+   ++    ++ +      + I GTLE+R+   D LILGGLNEG WP+    
Sbjct: 531  DARDYADLFNAVLSRGELRDRDAPHPRILIWGTLEARVNGADLLILGGLNEGSWPELPGA 590

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
            +P+L+R M+    L   E+ IG AAHDF+ A     +  TR+L+ ++  T+ SRWL RL+
Sbjct: 591  DPWLNRRMRHKAGLLVPERRIGLAAHDFQQAVAAPQVWLTRALKSDDAETVPSRWLNRLM 650

Query: 721  VL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
             L        G +    +K+RG  +L   R L+     P   RP P PP+EA+PR  S +
Sbjct: 651  NLMNGLPARHGPEALAAMKQRGAHWLALARALETPRPSPPATRPSPAPPVEARPRALSVT 710

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            EIK L+ DP+ +YARR+LKL  +   ++ PD   RGTL H ++ + +++ ++        
Sbjct: 711  EIKTLLRDPFHIYARRVLKLQALNPLQRAPDALLRGTLIHEVLEQFVRQSVSDPAQLTTE 770

Query: 834  LMKQIIDSHFE--KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
             + ++        +    P    +W+    K++  F E E   Q     +      +  I
Sbjct: 771  ALLRLSVQIVGDPEVVPYPTTRHLWQARLAKVAEWFAETERARQQIARPVHFEQMGRGEI 830

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
             ++G  L G ADRID+ + G   + DYKTG  P ++  Q   D QL LEAA ++ G+F +
Sbjct: 831  PALGFTLRGKADRIDMDERGNAHLYDYKTGAAPSEKE-QLHFDKQLLLEAAMVERGAFKE 889

Query: 952  IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
            +  R      ++ L           +     A+  +++       ++T     ++ + + 
Sbjct: 890  LQPRHAERAVFVSLAPGK-----PREVPAPLAEAPAQQVWAEFETLMTRWFEPDRGYTAR 944

Query: 1012 LRLSEKSNIQSEYDHLARVAEWREEY 1037
              L ++S+  S+YDHL+R  EW    
Sbjct: 945  AALLKESD-SSDYDHLSRFGEWDVTD 969


>gi|84685774|ref|ZP_01013670.1| putative Helicase/Exonuclease [Maritimibacter alkaliphilus HTCC2654]
 gi|84665867|gb|EAQ12341.1| putative Helicase/Exonuclease [Rhodobacterales bacterium HTCC2654]
          Length = 985

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 288/1048 (27%), Positives = 456/1048 (43%), Gaps = 90/1048 (8%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            +++P VF  AP   F   +I  L         R +   P  +A VT++V T R  + L  
Sbjct: 8    SERPRVFAQAPGVDFPNAVIEGL-------RARLNGQPPEAMARVTLFVNTMRMKRRLIE 60

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
             F +       +LP I+ + D+ ++   A      +L P VS ++R LELA LI    + 
Sbjct: 61   LFDQ---GPPALLPRIRLVTDLGQDVAMA------DLPPAVSPLRRRLELASLISELLDS 111

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
             PD+                     LA +LA+++D +  E    + L  L   ++  +W 
Sbjct: 112  QPDLAPRHAI-------------FPLADSLANLMDEMHGEGVPPDALEDLDVSQHSAYWA 158

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
             +  F+++ ++++     E         +  + R  A  + +    PI++AGSTGS  AT
Sbjct: 159  RSLAFIRLIARFFGTAGAEP-PDLEARQRKVIERVTANWVERPPADPILVAGSTGSRGAT 217

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
            A LM  VA  P GA+++PG D H+P  +W  + +          T   HPQ+   +LL  
Sbjct: 218  AMLMEAVARLPQGAVIMPGFDAHMPAHVWEKMDDAL--------TAEDHPQFRFRRLLSS 269

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            L +   DV            R+  +S +  P   +D    +       +I     +++LI
Sbjct: 270  LGLSPGDVGDWHAQDAPNPRRNAFVSLALRPAPVTDQWQDE--GPGFADIDAATRELSLI 327

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            EA + REEA +IA+ LR +  +  +++ALIT DR L R+V   L R+ I  D SAG PL 
Sbjct: 328  EAPSPREEASAIAMILRDAA-QRGREAALITPDRVLTRQVTAALDRWRITPDDSAGRPLP 386

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             T    +L  +     +    + + TL+KHPL   G       R    LEL ALR +   
Sbjct: 387  LTAPGRLLRHVAEMRGRRITGVDLLTLLKHPLTHTGGERNEHLRLSRDLELQALRRDMPF 446

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
             D   L                           +K   V  V+ +   +  L        
Sbjct: 447  PDKASLALWA----------------------GEKPDRVEWVEWLAPLVADLSE------ 478

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEGKTLSSLFSKI-IETGSCIKA 600
               G  S++   +  V+  + +       K   LW  E G+    L  ++  E     + 
Sbjct: 479  --TGTQSLTAHVEQVVSLAERLSAGPDDGKSGELWDREAGREARRLVDELLREAPFGGEM 536

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
               ++ D+   +++  +V+        + I GTLE+R+   D +IL GLNEG WP+  A 
Sbjct: 537  TPSDFHDLFAAVLNRGSVRNPDTPYPGIKIWGTLEARVGGADLVILAGLNEGTWPERPAP 596

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
            +P+++R M+    L   E+ IG +AHDF+   G   ++ TRSLR++   T+ SRW+ RL+
Sbjct: 597  DPWMNRDMRQKAGLLLPERRIGLSAHDFQQGLGAPEVVLTRSLRDDEAETVPSRWINRLM 656

Query: 721  VL------GGTDFFDNLKKRGQCYLDWTRKLDYT---TKQPHYKRPKPFPPLEAQPRTYS 771
             L       G D    ++ RG  +L   R+LD      K     RP P PP+E +P+  S
Sbjct: 657  NLMNGMSDAGADALKAMRSRGDAWLTLARELDRPGRDHKTDPAPRPSPRPPVEHRPKRLS 716

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-PE 830
            F++I  LI DPYA+YA +IL+L  I    + PD   RGT  H      I++R       +
Sbjct: 717  FTQIGTLIRDPYAIYADKILRLRGIDPLHQSPDAPLRGTAVHAAFERFIRERPKDEARSD 776

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                +  +    FE +   P   ++W     +I+  FL  E++ Q         I  +  
Sbjct: 777  ARARLLSVAREVFEAQAPWPATRLLWLAKLERIADDFLNDEDERQRDATNALTEIRGEAT 836

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
              +    + G ADRID+L  G V I DYKTG  P ++  QK  D QL LEA   + G F 
Sbjct: 837  FGTPPFTVHGTADRIDVLNFGQVAIYDYKTGQPPSEKQ-QKAYDKQLLLEALVARKGGFG 895

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
             +   K A + YI L  K K   I  D      + L  ++   L  ++    N E+ + S
Sbjct: 896  DLGRMKTARVAYIGLGAKSKYVPIDVD------ETLLARTQAELESVLADFANRERGYTS 949

Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038
               +   +    ++DHLAR  EW    +
Sbjct: 950  RRVVLSANRFGGDFDHLARYGEWDHTAE 977


>gi|148251711|ref|YP_001236296.1| DNA helicase/exodeoxyribonuclease V subunit B [Bradyrhizobium sp.
            BTAi1]
 gi|146403884|gb|ABQ32390.1| DNA helicase/exodeoxyribonuclease V, subunit B [Bradyrhizobium sp.
            BTAi1]
          Length = 1048

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 310/1060 (29%), Positives = 488/1060 (46%), Gaps = 49/1060 (4%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             VFT+  S+PF R +I AL++G LV+ F     +P  LA+ T+Y+PT+R+++  R  F++
Sbjct: 2    RVFTVPISAPFLRSVIAALVDGRLVDGFEAR-SDPARLATATLYLPTRRSLRVAREMFLD 60

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTAD-------LLLSYNLNPPVSNIQRLLELARLILIW 119
                 + +LP + +LGD+ E++                 +   ++++QR L LARL+  W
Sbjct: 61   ELKTDAAVLPRLVALGDIDEDELAFAEDRDAFLGPAPLEIPERLADLQRRLTLARLVAAW 120

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179
                        P S   +   PA+ + LA +LA +ID + T    WE L AL  ++   
Sbjct: 121  AKT---------PVSAPLVIGGPASTLALAGDLARLIDDMVTRGVSWEALDALVPDQLDK 171

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
            +W  + +FL+IA   W   L E+    P   +  L+ AEA  L     GP+I AGSTGS+
Sbjct: 172  YWQYSLEFLRIARTAWPAYLQEIERIEPAARRDLLIAAEAARLSAHPDGPVIAAGSTGSM 231

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK-STNITSSNTTYSTHPQYSLAK 298
            PATA+ +  VA  P+GA+VLPGLD  +  A WN+I                 HPQY++  
Sbjct: 232  PATAKFLLAVAKLPHGAVVLPGLDTDLDEAAWNSIGGAKDRAGRVITPPAVNHPQYAMHL 291

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK-IPNIQKCFS 357
            LL    ++R DV RL        GR ++IS++  P + + + +  + +     NI +   
Sbjct: 292  LLKRFGLERRDVIRL--AHPGRGGREVLISEAMRPSEATAVWHERLRQLDVAANIAEAMD 349

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            ++A++ A N   EA++IAIA+R +     K +AL+T DR LARRV   LTR+ +  D S 
Sbjct: 350  NLAVVAAPNPEMEALAIAIAMREA-RHLGKSAALVTPDRTLARRVMAALTRWHLTFDDSG 408

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L  T           A  +  +   +  L+KHPL + G   K  + A   LEL  LR
Sbjct: 409  GDALLETPAGIFARLAAEAAARSLEPPTLLALLKHPLCRLGRAAKGWTSAIETLELAMLR 468

Query: 478  GNKNSYDIMDLKSLVLD-------RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
            G +       L                 + ++ H    ++RLS E  + A  L+  +   
Sbjct: 469  GTRPQAGTSGLARDFARFRDEHTRLHQGEASSLHRAEPRARLSPEQLDRAGALIAQLQTA 528

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            + PL        ++      ++        L  +  D+       + + +G  L+  F  
Sbjct: 529  LAPLENL-----ASPRPQDFAELAARHREVLIALSTDDVGLSTA-FTDRDGAALARCFDD 582

Query: 591  IIETGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            ++ +G    + A   ++ D+         V+      + L I G LE+RL+  D +I+GG
Sbjct: 583  LLASGERCGLMAPLSDYPDLFHTAFSDRAVRRPERHGAQLQIYGPLEARLMQADRMIIGG 642

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
            L EGVWP     +P+LSR M+  L L   E+ IG +AHDF    G   +I T + +    
Sbjct: 643  LIEGVWPPAPRIDPWLSRPMRHQLGLDLPERRIGLSAHDFAQLLGAPEVILTHAAKSGGA 702

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
            P +ASR+L RL  + G D +     RG+ Y+ +   LD   +    ++P P PPL A+P 
Sbjct: 703  PAVASRFLHRLEAVAGADRWKAATARGETYVRYAEVLDQPPEVKPVEQPAPKPPLAARPL 762

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S + I+  + DPY ++AR ILKLD +          DRG+  H  I E  +   +   
Sbjct: 763  RMSVTAIEDWLRDPYTIFARYILKLDPLDPVDMPLSAADRGSAIHEAIGEFTQTYADALP 822

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
            P+   +++QI + HF      P    +W   F +I+  F   E   +  I  I   I  +
Sbjct: 823  PDPAPVLRQIGEKHFAPLMERPEARALWWPRFQRIAGWFAAWESARREQIGAITAEIRGE 882

Query: 889  MAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
            + I         L+  ADRI+    G   I DYKTG  P  +  +  + PQL+LEAA L+
Sbjct: 883  IGIPLSPDRTFILSARADRIERRAEGTYAILDYKTGQPPTAKQVRMGLSPQLTLEAAILR 942

Query: 946  AGSFSQIDCRK-VANLFYIRLKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEI 997
             G F  I     ++ L YIRL               I         D+ ++++   L  +
Sbjct: 943  EGGFDGIPAGSLISQLVYIRLSGNNPPGEERILELKINKSDPPQHPDQAAQEARAKLEAL 1002

Query: 998  VTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            +   ++  Q + S L LS  +N    YD LAR+ EW    
Sbjct: 1003 IRSFEDINQGYTS-LNLSMWANRYGAYDDLARIKEWSAAG 1041


>gi|56698683|ref|YP_169060.1| hypothetical protein SPO3872 [Ruegeria pomeroyi DSS-3]
 gi|56680420|gb|AAV97086.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 975

 Score =  568 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 276/1044 (26%), Positives = 450/1044 (43%), Gaps = 88/1044 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P VF + P   F R ++  L         R     P +LA   + V T R  + +R
Sbjct: 4    PCPHPRVFALPPGVDFPRALVQGL-------RQRAAGQAPHVLARAQVVVNTHRMERRIR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
            + F       +T+LP +  + D+        L    +L P +  ++R LEL +LI    +
Sbjct: 57   ALF---DAGPATLLPRVSLVTDL------TALGAVTHLPPAIPPLRRRLELVQLITRLLD 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            + PD+                A+   L+ +LA +ID ++ E      + AL        W
Sbjct: 108  QQPDLAAR-------------ASIFDLSDSLAALIDEMQGEGVSPAIIRALDVSDQSGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A  F+ IA  Y      EL+       +  +    AE  ++  + P+I+AGSTGS   
Sbjct: 155  ARAQQFIAIAEHYLRSGDDELDV--QARQRRVVEALIAEWALRPPEHPVILAGSTGSRGT 212

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  LM  VA  P GA+VLPG D   P  +W+ + +          T   HPQ+  A+L+ 
Sbjct: 213  TMLLMEAVARLPQGAVVLPGYDFDQPERVWDGLEDAL--------TAEDHPQFRFARLMA 264

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L++  + +    +       R+ ++S +  P   +D   ++    ++  I     D+ L
Sbjct: 265  RLNLTPDQIAPWSDDVAPCPARNRLVSLALRPAPVTDAWMSE--GPQLEGIDTATRDITL 322

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            IEA + R+EA++IA+ LR + ++  + +ALIT DR L R+V   L R+ I  D SAG+PL
Sbjct: 323  IEAASPRDEALAIALRLRQAAED-GQSAALITPDRMLTRQVSAALDRWNILPDDSAGLPL 381

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  +        D  A+ +++KHPL   G            LEL   R    
Sbjct: 382  HLSPPGRFLRHVAALFSARLDGEALLSVLKHPLCHTGEGRNEHLLHTRDLELDLRRNGPP 441

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
               + DL +                                    + +  T  V      
Sbjct: 442  FPGVGDLAAFAT------------------------------RREVPEGWTNWVARCFCD 471

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKA 600
                G L + DW        + +         +LW ++ G+   ++ + +  E     + 
Sbjct: 472  QHVTGTLPLIDWVDRLRQLAEALSAGTEGGTGSLWEQKAGQEALAIVTALADEAPHGGEM 531

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            +A ++ D++  L+    V+ +      + I GTLE+R++  + LILGGLNEG WP++ A 
Sbjct: 532  DARDFADLLGGLLSTGEVRDRDAPYPGIMIWGTLEARVMGAELLILGGLNEGSWPESPAP 591

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
            +P+L+R M+ D  L   E+ IG +AHDF+ A G   +  TR+ R ++  T+ SRWL RL 
Sbjct: 592  DPWLNRRMRHDAGLLLPERRIGLSAHDFQQAIGAPEVWLTRAKRSDDAETVPSRWLNRLT 651

Query: 721  VL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
             L       GG      ++ RG+ +L     L+   +     RP P PPL A+PR  S +
Sbjct: 652  NLLQGLPDQGGAAALSEMRARGRRWLSMAEALEEAPRSAPAPRPSPRPPLAARPRQLSVT 711

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            EIK+LI DPYA+YAR +L+L  +    + PD   RG + H I+   ++  +         
Sbjct: 712  EIKKLIRDPYAIYARHVLRLKPLDPLVQAPDALLRGIVIHEILESFVRDSVLDMALLNRD 771

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
               +   +  E+    P    +W     +++ +FL  EE  ++    I      +  ++ 
Sbjct: 772  TFLKRAATMLEELVAWPTARALWLARLDRVADAFLLSEEARRADAGPIAFEARMRKQLDG 831

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            +   LTG ADRID  + G + + DYKTG  P ++  Q   D QL +EAA  + G F  ID
Sbjct: 832  LDFTLTGRADRIDRTERGSLCLYDYKTGAPPSEKQ-QAKFDRQLLIEAALAEEGGFEGID 890

Query: 954  CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
               VA   +I +   +K      D       E   +    L +++      +Q F +  R
Sbjct: 891  PAPVARAVFIGMGGSYKEVPAPLD------AEPPARVWAELHQLIGAYFEPDQGFTAR-R 943

Query: 1014 LSEKSNIQSEYDHLARVAEWREEY 1037
            +  K +   +YDHLAR  EW    
Sbjct: 944  MLHKDSDAGDYDHLARFGEWDRSA 967


>gi|154250593|ref|YP_001411417.1| double-strand break repair protein AddB [Parvibaculum lavamentivorans
            DS-1]
 gi|154154543|gb|ABS61760.1| Double-strand break repair protein AddB [Parvibaculum lavamentivorans
            DS-1]
          Length = 1001

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 300/1053 (28%), Positives = 481/1053 (45%), Gaps = 72/1053 (6%)

Query: 1    MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
            M     N+FT+ P +PF   +   LL+   +            LA +TI +PT+R+++ L
Sbjct: 1    MRADSLNLFTMPPGTPFLERLAATLLDDPSLGGRFKGSPE---LAEITILLPTRRSVRAL 57

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL----LSYNLNPPVSNIQRLLELARLI 116
               F+        +LP I++LGDV EE    D       +  L P +  ++R L LAR+I
Sbjct: 58   GEAFLRAGAGAPLLLPSIRTLGDVDEEDLILDPRGLGREALELPPAMPALERQLRLARMI 117

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
            +                           A+ LA +L   +D++ TE      L  L  + 
Sbjct: 118  VE------------------GQGGDETRALALAADLGHFLDMVLTEGADLTRLADLVPQD 159

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGS 235
            +   W +  DFLK+ +  W E L  L        +  L+RA+AE        GP+I AGS
Sbjct: 160  FADHWQITIDFLKVLTARWPEELARLGHMEQAERRNLLLRAQAEAWTAAPPPGPVIAAGS 219

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
            TGSIPATA L+  VA+ P GA+VLP LD  +    WN I +  T          +HPQY 
Sbjct: 220  TGSIPATAALLGVVAHLPMGAVVLPALDLDLDEESWNIIGKPGTA---------SHPQYG 270

Query: 296  LAKLLDFLDIKREDVKRLGNV--SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            + KLL  L   R DV        S  +  R  ++S++  P +T++     +      +++
Sbjct: 271  MKKLLAHLRATRADVGIWPGAERSAALRSRGRLLSEALRPAETTERWLGRLGALD-GDVK 329

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
                 +ALIEA +ER+EA ++A+ +R  L+   K +AL+T DR LARRV +EL R+ I++
Sbjct: 330  DGLKGLALIEAPSERDEAGAVALLMRDVLERPGKTAALVTPDRKLARRVAMELRRWKIDV 389

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            + S G PL+ T   + L  + N + +    + +   +KHPLA  G            LE+
Sbjct: 390  NDSGGEPLAKTAPVAFLRLVANMVTEDLAPVPLLACLKHPLAAAGEEPAKFRARVRRLEM 449

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
              LRG + +  +  L++                         D     +L+D I + I P
Sbjct: 450  HLLRGPRPAPGLDGLRAACRALEDK---------------PGDSGEISILLDKIERSIAP 494

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP-NLWFEEEGKTLSSLFSKII 592
            L+       +     + +   +  V   + +           LW  E G+  +    +++
Sbjct: 495  LLN------AATKKGTATSIVEAHVEAAERLAASATETGAERLWKGEAGEAAADFIRELM 548

Query: 593  ETGSC-IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            E        +   +      L+ G  ++P+  + S LFI G LE+RL + D +ILGGLNE
Sbjct: 549  EATPAFGDIDPRFYPHFFDVLLSGRVLRPRWGRHSRLFIWGPLEARLQHADRMILGGLNE 608

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
            G WP     +P+L+R M++ + L+  E+ IG AAHDF           TR+L+    PT+
Sbjct: 609  GTWPAEANIDPWLNRPMRATMGLEPPERRIGLAAHDFAEGASAGEAFLTRALKVEGAPTV 668

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            ASRW  RL  L      +      Q +  W  KLD   K     RP+P PPLEA+P+ +S
Sbjct: 669  ASRWWLRLASLLQGLEQEEAVSAPQ-WWQWAHKLDEPAKVLTPLRPRPVPPLEARPQRFS 727

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             +EI+ LI DPYA+YAR+IL L  +     D    +RGT+ H  + + ++          
Sbjct: 728  VTEIETLIRDPYAIYARKILGLKVLDPLDADIAAAERGTIIHEALEKFVEAYPRDLPENA 787

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
               +  + +  F +    P +   W   F +I+   +++E++ ++ +  I      ++ I
Sbjct: 788  LQELINVGEEAFRQAIGRPGVAAFWWPRFLRIAKWIVDYEQEERAGLRHIHAETRGEILI 847

Query: 892  ESI--GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
              +   + L+G ADRID  + G V+I DYKTG  P  +  +  + PQL LEAA +  G F
Sbjct: 848  AELAQPVVLSGKADRIDEREDGMVNIVDYKTGTVPSIKQVEIGLTPQLPLEAAMMARGGF 907

Query: 950  -----SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004
                 + I   K A+L Y+RL        +     + +  +L++ +   L++++   +  
Sbjct: 908  RTKDGAPIPPAKAASLIYLRLTGGETAGEVRAIPDEGA--DLADNTYAWLVDLLRQYEAE 965

Query: 1005 EQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
              P++S  R         +YDHLARV EW    
Sbjct: 966  TTPYLSRPRPMFWGR-YGDYDHLARVKEWSAAG 997


>gi|114762247|ref|ZP_01441715.1| hypothetical protein 1100011001331_R2601_14950 [Pelagibaca
            bermudensis HTCC2601]
 gi|114545271|gb|EAU48274.1| hypothetical protein R2601_14950 [Roseovarius sp. HTCC2601]
          Length = 976

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 275/1047 (26%), Positives = 455/1047 (43%), Gaps = 91/1047 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             +  P VF +AP   F   ++  L         R +   P  +A V + V T R  + +R
Sbjct: 4    PSAAPRVFAVAPGIDFPEALVAGL-------RTRMEGQPPEAMARVELIVNTTRMARRIR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              F       +T+LP I+ L +V       D +   +L  PVS ++R LEL  L+    +
Sbjct: 57   QIFDR---GPATLLPRIRLLSNVA------DPIALAHLPAPVSPLRRRLELTGLVSGLLD 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              PD+                     LA +LA ++D ++ E    ED+ AL        W
Sbjct: 108  AQPDLAPR-------------TALFDLADSLATLMDEMQDEGVSPEDIAALDVSDESGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A  FL I  +Y+     E    +    ++AL +  ++  +     P+I+AGSTGS   
Sbjct: 155  QRALSFLNIVQRYFDS--AEDAPDTTSFRRLALKQRLSDWEVNPPSHPVILAGSTGSRGG 212

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  LM  VA  P G +VLPG D   P ++W+ +T+   +          HPQ+  AKL++
Sbjct: 213  TNELMRAVARLPQGELVLPGFDFDTPESVWHGLTDALAS--------EDHPQFRFAKLIN 264

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L ++  DV R          R+ +IS +  P   +D    +     +P++     D+ L
Sbjct: 265  DLGMQAGDVLRWSEAEPPSAARNRLISLALRPAPVTDQWRDE--GPMLPDLIAATEDLTL 322

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA ++R+EA +IA+ LR + +E    +ALIT DR L R+V   L R+ I  D SAG PL
Sbjct: 323  VEAASQRDEATAIALRLRQAAEE-GVTAALITPDRMLTRQVTAALDRWNILPDDSAGTPL 381

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  +           A+ TL+KHPL   G       RA   LEL     +  
Sbjct: 382  QLSPPGRFLRHVSTLFQHDLTAEALLTLLKHPLCHSGHDRGEHLRATRELELHIRNKSWP 441

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                  +++                                 V   ++     V     +
Sbjct: 442  YPRPELIRAWG-------------------------------VAAEMESWANWVADSFCQ 470

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKA 600
                G  ++SDW +  +   + +      +   LW E  G+   ++   +  E G     
Sbjct: 471  PPRRGKRALSDWIEDHIARAEAIAAGPQGEDSELWKEAAGRKARAVVEGLRDEAGFGTDL 530

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            +A ++ D+   ++    ++ +      + I GTLE+R++  D LILGGLNEG WP+    
Sbjct: 531  DARDYGDLFAAILQQHELRDRDAPHPRILIWGTLEARVMGADLLILGGLNEGSWPELPGA 590

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
            +P+L+R M+    L   E+ IG AAHDF+ A     +  TR+L+ ++  T+ SRWL RL+
Sbjct: 591  DPWLNRRMRHKAGLLVPERRIGLAAHDFQQAVAAPQVWLTRALKSDDAETVPSRWLNRLM 650

Query: 721  VL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
             L        G      +K RG  +L   R L+     P   RP P PP+EA+PR+ S +
Sbjct: 651  NLMNGLPDRSGPQALAAMKARGGHWLALARALERPQPSPPATRPSPAPPVEARPRSLSVT 710

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            EIK LI DP+ +YA+R+L+L  +   ++ PD   RG L H ++ E +K+ ++  +     
Sbjct: 711  EIKHLIRDPFHIYAKRVLRLAPLNPLQRAPDALLRGILIHEVLEEFVKESLSDPSQLTTE 770

Query: 834  LMKQIIDSHFE--KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
             + +   +     +    P    +W+    +++  F E E   Q+        I     I
Sbjct: 771  ALLRRTTALIGDPERVPYPTTRHLWQARLGRVAEWFAETERARQAIARPAHFEIMGHAEI 830

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
             ++G  L G ADRID+   G   + DYKTG  P +   Q+  D QL LEAA ++ G+F  
Sbjct: 831  PALGFTLRGKADRIDIDDRGGAHLYDYKTGAAPTESQ-QRHFDKQLLLEAAMVERGAFKD 889

Query: 952  IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
            +  R      ++ +    +      +      +  +++       ++      ++ + + 
Sbjct: 890  LQPRHTEQAVFVSVANNPREVPAPLE------EMPAQQVWAEFETLMARWFEPDRGYTAR 943

Query: 1012 LRLSEKSNIQSEYDHLARVAEWREEYD 1038
              L  + ++ SEYDHL+R  EW    +
Sbjct: 944  AALVREKDL-SEYDHLSRFGEWDVVDE 969


>gi|209883636|ref|YP_002287493.1| double-strand break repair protein AddB [Oligotropha carboxidovorans
            OM5]
 gi|209871832|gb|ACI91628.1| double-strand break repair protein AddB [Oligotropha carboxidovorans
            OM5]
          Length = 1066

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 301/1058 (28%), Positives = 477/1058 (45%), Gaps = 38/1058 (3%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             +F I  S+PF R ++ AL +G L+E F     NP  LA  T+Y+PT+RA +  R  F++
Sbjct: 11   RLFNIPSSAPFLRTLLTALADGRLIEGFEAR-KNPERLAEATLYLPTQRACRMAREVFLD 69

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLL-----LSYNLNPPVSNIQRLLELARLILIWRN 121
            +  + + +LP I +LG V E++            S N+   +  + R L L RL+  W  
Sbjct: 70   VMEQDAVLLPRIVALGHVDEDELAFAQDEATEFPSLNVPDALDGLPRRLVLMRLVSAWAK 129

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            +L        P     +   PA+ + LA +LA +ID + T    W  L+ L  +    +W
Sbjct: 130  RLGSRELASAP----LVAGGPASTLALADDLARLIDDMTTRGVDWHALNTLVPDDLDQYW 185

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
             +  DFLKIAS+ W   L E     PV  +  L+ AEA  +     GP I AGSTGS+P+
Sbjct: 186  KITLDFLKIASEAWPAHLRESELIEPVARRDLLIAAEAARMAAAP-GPFIAAGSTGSMPS 244

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAKLL 300
            TA+ +  VA HP GA+VLPGLD  +    W  I   + +    +    S+HPQY+L  LL
Sbjct: 245  TAKFLHAVAQHPQGAVVLPGLDTDLDDEAWRAIGGVRDSTGRFAEHPLSSHPQYALHGLL 304

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP-NIQKCFSDV 359
            D   + R+ V+ L   S   +GR ++ S++  P   +   +  + +  +   I+  F ++
Sbjct: 305  DVFGVDRKAVRALAEPSA--HGRELIASEAMRPARETAQWHHRLADPDVTTRIEAGFDNL 362

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            A++EA N   EA++IA A+R +  +  K +AL+T DR LARRV   L R+ +  D S G 
Sbjct: 363  AIVEAANPEMEALAIATAMREA-RQFGKTTALVTPDRALARRVMAALGRWQLPYDDSGGD 421

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
             L  T            +        +  L+KHPL + G P    ++A   LEL  LRG 
Sbjct: 422  SLMDTPAGIFARLAAETVTSELAPPTLLALLKHPLLRLGAPAGGWTKATANLELAVLRGT 481

Query: 480  KNSYDIMDLKSLVL-------DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
            + +     L++               + +  H    ++RL+ +D E A   +D ++  + 
Sbjct: 482  RPAPGCKGLQAAFAAFVEEWSKTQRKELSTLHPSEPRARLTPDDIESATRALDALVSALA 541

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
            PL +     +           T   ++   +  +                 L+      +
Sbjct: 542  PLESVVRGTHDFATLAQRHYETITHLSRDNDGLIAAFAGTDGQQLASAFNELAPPNENDV 601

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
               + I   A ++ D+         V+      + L I G LE+RL   D +ILGGL EG
Sbjct: 602  PAPTHIALEAADYPDLFATAFANRVVRRPENSDAALRIYGLLEARLTQCDRVILGGLVEG 661

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
            VWP     +P+LSR M+ +L L   E+ IG  AHDF    G + +I T + +    P +A
Sbjct: 662  VWPPAPRIDPWLSRPMRHELGLDLPERRIGLTAHDFAQLLGAKEVIITHATKVGGAPAVA 721

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
            SR+L R+  + GT  +   +KRG  Y+ +   LD         +P P PP+  +P   S 
Sbjct: 722  SRFLHRMKAIAGTKAWTEAEKRGADYVRYAEALDAPDSITPVAQPAPTPPVALRPLQMSV 781

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +EI+  + DPY ++A+RILKL  +          DRG+  HN + +  +K       +I 
Sbjct: 782  TEIEDWLRDPYTIFAKRILKLTLLDPVDLPLTAADRGSAIHNALGDFTQKHSKTLPEDIV 841

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
              ++   + HF      P    +W   F +I+  F   E + ++   +I      ++AI 
Sbjct: 842  AELRFCGEEHFAALMAHPEARALWWPRFLRIADWFAGWELRRRAETVEIAAEQRGEIAIP 901

Query: 893  ---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
                    L+  ADRI+L       I DYKTG  P  +  Q  + PQL+LEAA L+ G F
Sbjct: 902  LGDGREFRLSARADRIELRADRTFAIIDYKTGQPPSNKQVQLGLSPQLTLEAAILRGGGF 961

Query: 950  SQIDCR-----KVANLFYIRLKQKFKIDC------ITNDKKKYSADELSEKSLKNLIEIV 998
                        V+ L Y+RL                        D+ ++ +L  L  ++
Sbjct: 962  RHAFASLPANPSVSELVYVRLSGNNPAGKEQIVNLTPKGGDVQLPDDAADAALAKLTALI 1021

Query: 999  TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREE 1036
                + +Q + S L L+  S+    YD LAR+ EW   
Sbjct: 1022 RKFDDPKQAYNS-LALAMWSDRYGVYDDLARIKEWSVA 1058


>gi|146337256|ref|YP_001202304.1| helicase-exonuclease type V family protein AddB subunit
            [Bradyrhizobium sp. ORS278]
 gi|146190062|emb|CAL74054.1| putative helicase-exonuclease type V protein family, addB subunit
            [Bradyrhizobium sp. ORS278]
          Length = 1048

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 302/1060 (28%), Positives = 482/1060 (45%), Gaps = 49/1060 (4%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             VFT+  S+PF R +I AL++G LV+ F     +P  LA+ T+Y+PT+R+++  R  F++
Sbjct: 2    RVFTVPISAPFLRSVIAALVDGRLVDGFEAR-SDPARLATATLYLPTRRSLRVAREMFLD 60

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTAD-------LLLSYNLNPPVSNIQRLLELARLILIW 119
                 + +LP + +LGD+ E++                 L   + ++QR L LARL+  W
Sbjct: 61   ELRTDAAVLPRLVALGDIDEDELAFAEDRDAFLGPAPLELPERLDDLQRRLTLARLVAAW 120

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179
                        P S   +   PA+ + LA +LA +ID I T    W+ L  L  ++   
Sbjct: 121  AKT---------PVSAPLVIGGPASTLALAGDLARLIDDIVTRGVSWDALDQLVPDQLDK 171

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
            +W  + +FL+IA   W   L E+    P   +  L+ AEA  L     GP+I AGSTGS+
Sbjct: 172  YWQFSLEFLRIARTAWPAYLQEIERIEPAARRDLLIAAEAARLSAHPDGPVIAAGSTGSM 231

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK-STNITSSNTTYSTHPQYSLAK 298
            PATA+ +  VA  P+GA+VLPGLD  +  A W++I      +          HPQY++  
Sbjct: 232  PATAKFLLAVAKLPHGAVVLPGLDTDLDEAAWSSIGGAKDRSGRVITPPAVNHPQYAMHL 291

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK-IPNIQKCFS 357
            LL    ++R DV RL        GR ++IS++  P + + + +  + +     NI +   
Sbjct: 292  LLRRFGLERRDVLRL--APPGRGGREVLISEAMRPSEATAIWHERLRQFDIAANIAEAMD 349

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            +++++ A N   EA++IAIA+R +     K +AL+T DR LARRV   LTR+ +  D S 
Sbjct: 350  NLSVVAAPNPEMEALAIAIAMREA-RHLGKSAALVTPDRALARRVMAALTRWHLTFDDSG 408

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L  T           A  +  +   +  L+KHPL + G        A   LEL  LR
Sbjct: 409  GDALLETPAGIFARLAAEAAARGLEPPTLLALLKHPLCRLGRNAYGWKHAIETLELALLR 468

Query: 478  GNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
            G +       L       +         + ++ H    ++RL  +  + A  L+  +   
Sbjct: 469  GTRPQAGTGGLARDFARFRDEHAKLHQGEASSLHRAEPRARLKPDQLDQAAALIAQLQTA 528

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            + PL        ++      ++        L  +  D+       + + +G  L+  F  
Sbjct: 529  LAPLENL-----ASPRPQDFAELAARHREVLIALSTDDVGLGTA-FTDRDGAALARCFDD 582

Query: 591  IIETGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            ++ +G    + A   ++ D+         V+      + L I G LE+RL+  D +I+GG
Sbjct: 583  LLASGERCGLMAPLSDYPDLFHTAFSDRAVRRPERHGAQLQIYGPLEARLMQTDRMIIGG 642

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
            L EG+WP     +P+LSR M+  L L   E+ IG +AHDF    G   +I T + +    
Sbjct: 643  LVEGIWPPAPRIDPWLSRPMRHQLGLDLPERRIGLSAHDFAQLLGAPEVILTHAAKSGGA 702

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
            P +ASR+L RL  + G   +     RG+ Y+ +   LD   +     +P P PPLEA+P 
Sbjct: 703  PAVASRFLHRLQAVAGDAQWKAATARGETYVRYAEVLDQPREVKPIPQPAPKPPLEARPL 762

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S + I+  + DPY ++AR IL+LD +          DRG+  H  I E  +    +  
Sbjct: 763  RMSVTAIEDWLRDPYTIFARYILRLDPLDPVDMPLSAADRGSAIHEAIGEFTQTFAKELP 822

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                H ++ I + HF      P    +W   F +I+  F   E   +  I  I   I  +
Sbjct: 823  LHPAHALRVIGEKHFAPLMERPEARALWWPRFQRIAGWFAAWETARREHIGAITAEIRGE 882

Query: 889  MAIE---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
            + I         L+  ADRI+    G   I DYKTG  P  +  +  + PQL+LEAA L+
Sbjct: 883  IGIPLGKDRTFMLSARADRIEQRAEGTYAILDYKTGQPPTAKQVRMGLSPQLTLEAAILR 942

Query: 946  AGSFSQIDCRK-VANLFYIRLKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEI 997
             G F  I     ++ L Y+RL               I         D+ ++++   L E+
Sbjct: 943  EGGFDGIPAGSLISQLVYVRLSGNNPPGEERILELKINKSDTPQHPDQAAQEARNKLEEL 1002

Query: 998  VTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            +   ++  Q + S L LS  +N    YD LAR+ EW    
Sbjct: 1003 IRSFEDVNQGYTS-LNLSMWANRYGSYDDLARIKEWSAAG 1041


>gi|115522489|ref|YP_779400.1| hypothetical protein RPE_0461 [Rhodopseudomonas palustris BisA53]
 gi|115516436|gb|ABJ04420.1| DNA helicase/exodeoxyribonuclease V, subunit B [Rhodopseudomonas
            palustris BisA53]
          Length = 1049

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 315/1059 (29%), Positives = 487/1059 (45%), Gaps = 44/1059 (4%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             VFTI PS+PF R +I AL++G LV  F      P  LA+ T+Y+PT+RA +  R  F++
Sbjct: 2    RVFTIPPSAPFLRRLITALVDGELVPGFEARTQ-PERLATATLYLPTRRAGRMAREIFLD 60

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTAD-------LLLSYNLNPPVSNIQRLLELARLILIW 119
            +  + + ILP I +LGD+ E++              + ++ P +  ++R L LA+L+ +W
Sbjct: 61   VLQRDAAILPRIVALGDIDEDELAFAQEADPLGGAAALDVPPALGELERRLTLAQLVAVW 120

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179
              +L        P     +   PA+ I LA +LA +ID + T    W+ L  L  +    
Sbjct: 121  AKQLKPGDPAAAP----LVVGGPASTIALATDLARLIDDMATRGVDWKQLDGLVPDALDR 176

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
            +W L+ DFLKIA ++W   L E     P   +  L+ AEA+ L     GP+I AGSTGS+
Sbjct: 177  YWQLSLDFLKIARQWWPAFLQERGRIEPALRRDQLIDAEAKRLAAHPTGPVIAAGSTGSM 236

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT-EKSTNITSSNTTYSTHPQYSLAK 298
            PATAR ++ +A  P GA+VLPGLD  +  A W  I   + +   +     S HPQ++L  
Sbjct: 237  PATARFLAAIARLPQGAVVLPGLDSDLDDAAWALIGGHQDSQGQTLAPPSSNHPQFALHA 296

Query: 299  LL-DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP-NIQKCF 356
            LL D L I+R DV  LG  S    GR ++ S++  P   +   +  + E  +   I    
Sbjct: 297  LLRDHLKIERRDVVPLGEPSP--TGRELLASEALRPSTATARWHQRLQEPAVEARIAAGM 354

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
              +++I ADN   EA+SIA+ALR + D   + +AL+T DR LARRV   L R+ +  D S
Sbjct: 355  QTLSVIAADNSEMEALSIAVALREA-DALGRTAALVTPDRALARRVMAALGRWNLPFDDS 413

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
             G  L  T           A     +   +  L+KHPL + G  +    RA   LEL  L
Sbjct: 414  GGDALVDTPVGIFARLAAEAATTGLEPATLLALLKHPLLRLGAAQGTWQRAIETLELAVL 473

Query: 477  RGNKNSYDIMDLKSL-------VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
            RG +       L          +      + +  H    +++L +   + A LL+  +  
Sbjct: 474  RGTRPPAMSSGLAQEFSRFRVELAKLRRGEPSLLHRAEPRAQLRDAALDQAELLITRLAA 533

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             + PL T +  +        ++++ +     L  +  D    +  L   +      +   
Sbjct: 534  ALAPLETLQAAQQ-----FDLAEFARRHCEVLIALSSDADGLVAALDGPQGSVLAGAFDE 588

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                  S + A   ++ +    L     V+      + L I G LE+RL + D LILGGL
Sbjct: 589  M--PASSGVTALPRDYPEAFAALFADRIVRRPEAVGARLRIYGPLEARLTHCDRLILGGL 646

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
             EG+WP     +P+LSR M+  L L   E+ IG +AHDF    G   +I T + +    P
Sbjct: 647  VEGIWPPAPRIDPWLSRPMRHQLGLDLPERRIGLSAHDFAQLLGHDEVILTYAAKVGGSP 706

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
             +ASR+L RL  + G   + +   RGQ YLD+   LD   K     +P P PP  A+PR 
Sbjct: 707  AVASRFLHRLEAVAGETRWKDAVARGQTYLDYAHALDRPDKIEPIAQPAPRPPRAARPRK 766

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S + I+  + DPY +YA+ ILKL  +          DRG+  H  I E  +        
Sbjct: 767  LSVTAIEDWLRDPYTIYAKHILKLIPLDPVDMPLSAADRGSAIHAAIGEFTETYATSLPQ 826

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
            +   L++ I   HF      P    +W   F +I+  F   E + + ++  +       +
Sbjct: 827  DSAALLRAIGRRHFAPLMQRPEAAALWWPRFLRIADWFANWETERRLNVSSVITEQSGSL 886

Query: 890  AIE---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             I         L+  ADRI+        + DYKTG+ P  +  +  + PQL+LEAA L+A
Sbjct: 887  TIALDHDREFVLSARADRIERRTDRTFALLDYKTGNPPSAKQVRMGLSPQLTLEAAILRA 946

Query: 947  GSFSQIDC-RKVANLFYIRLKQKFKID-------CITNDKKKYSADELSEKSLKNLIEIV 998
            G F+ I     V+ L Y++L                   +   S D+ + ++   L E++
Sbjct: 947  GGFADIPAGASVSELVYVKLSGNNPPGNECVLELKRDRSEPVQSPDDAASEARAKLEELI 1006

Query: 999  TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
               ++   P+ S L L+  SN    YD LAR+ EW    
Sbjct: 1007 RKFEDEATPYTS-LDLAMWSNRYGSYDDLARIKEWSAAG 1044


>gi|86136734|ref|ZP_01055312.1| hypothetical protein MED193_13707 [Roseobacter sp. MED193]
 gi|85826058|gb|EAQ46255.1| hypothetical protein MED193_13707 [Roseobacter sp. MED193]
          Length = 985

 Score =  556 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 276/1052 (26%), Positives = 455/1052 (43%), Gaps = 96/1052 (9%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P VF +     F R +   L+        R     P  LA V + + T R ++  R
Sbjct: 6    PQDSPRVFAVPNGVDFPRALAQGLIE-------RSTSQPPEGLARVDLILNTSRMMRRCR 58

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
            + F E     + +LP ++ L D+  E     L            + +L+           
Sbjct: 59   NLFEE---GPALLLPRMRLLTDLAREANLQGLPPPLPPLRRRLELSQLI----------A 105

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            KL D   DL   S         +   L+ +LA+++D +++E    E +  L        W
Sbjct: 106  KLLDAQPDLAARS---------SLYDLSDSLANLVDEMQSEGVSTEVIRNLDISDMSGHW 156

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A  F+ I  ++       ++       +  +    A+  ++  + P+I+AGSTGS   
Sbjct: 157  ARAQQFIGIVDQFIDLHSDTVDV--QARQRQMVENLIAKWQVEPPQHPVILAGSTGSRGT 214

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  LM  +A  P GA+VLPG D   P  +W  + +  T+          HPQY  AKLL 
Sbjct: 215  THMLMEAIARLPQGAVVLPGYDFEQPAEVWTHLRDALTS--------EDHPQYRFAKLLS 266

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             LD+   +V+R          R+ ++S +  P   +    ++    K+  + K  +DV L
Sbjct: 267  DLDMTPREVRRWSPDEPVSPARNRLVSLALRPAPVTHAWMSE--GPKLTQLDKACADVTL 324

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA N R EA++IA+ LR + +E  K +ALI+ DR L R V   L R+GI  D SAG+PL
Sbjct: 325  VEAPNPRGEALAIALRLRQAAEE-GKTAALISPDRMLTRLVSAALDRWGILPDDSAGLPL 383

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF----GFPEKYLSRAKNALELVALR 477
              T     L  +     +     A+ TL+KHPL               R     EL   R
Sbjct: 384  QLTPPGRFLRHVAELFCRPLTADALLTLLKHPLTNDGSSAEAARGEHLRHTRDYELDLRR 443

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                  D     +  ++R                      +L +   D + Q        
Sbjct: 444  NGPPFPDAESFAAFGMER----------------------DLILGWTDWLSQNFAD---- 477

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLD----EHRKLPNLWFEEEGKTLSSLFSKI-I 592
                      L ++DW  L     + +          +   LW ++ G     +FS +  
Sbjct: 478  ----QQVTTPLPLTDWVALLRARAEAIAAGSQVQAEGESGTLWEKKAGIEALKIFSNLEA 533

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
            E     + +A ++ D+++ ++    V+ +     ++ I GTLE+R+   D +ILGGLNEG
Sbjct: 534  EAEHGGEMSARDFADLLSAILSQGEVRDRDTPYGSIMIWGTLEARVQGADLVILGGLNEG 593

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
             WP+    +P+L+R ++    L   E+ IG +AHDF+ A     +  TR+ R +   T+A
Sbjct: 594  SWPEAAKPDPWLNRQLRHQAGLLLPERRIGLSAHDFQQAVAAPEVWLTRAARSDEADTVA 653

Query: 713  SRWLQRLLVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
            SRWL RL  L       GG    D ++ RGQ +LDW   L+  T+ P   RP P PP+ +
Sbjct: 654  SRWLNRLTNLLSGLPDQGGKAALDAMRARGQEWLDWAEALEQPTELPSAPRPSPRPPVAS 713

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
            +PR  + +EI +LI DPYA+YA+ +L+L  +    ++PD   RGT+ H I  + I+  + 
Sbjct: 714  RPRRLTITEIPRLIRDPYAIYAKHVLRLRPLNPLVQEPDALLRGTVVHEIFEDFIRDSLE 773

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
              +      + +   +  E++   P   ++W     +++  F+  E+  QS    + +  
Sbjct: 774  DPSRLTADHLIETARALLERDVPWPVARLLWLSRIQRLAGDFILAEQSRQSRATPLKLEA 833

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
              +  +E +   +   ADRID  + GF+ + DYKTG  P +   QK  + QL +EAA  +
Sbjct: 834  MGEARLEPLDFTIACRADRIDQDERGFLHLYDYKTGAPPSEAQ-QKKFEKQLLIEAAMAE 892

Query: 946  AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
             G+F +I   +VA   +I L    K             D+   K  + L +++      +
Sbjct: 893  EGAFKEIGPAEVARAAFIGLGSNLKDVPAPLS------DQPPAKIWEELKQLIGAYFEQD 946

Query: 1006 QPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            Q + S  R+  + +I  +YDHLAR  EW    
Sbjct: 947  QGYSSR-RMVHRDDIAGDYDHLARFGEWDRSA 977


>gi|328545811|ref|YP_004305920.1| Double-strand break repair protein AddB [polymorphum gilvum
            SL003B-26A1]
 gi|326415551|gb|ADZ72614.1| Double-strand break repair protein AddB [Polymorphum gilvum
            SL003B-26A1]
          Length = 1053

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 350/1055 (33%), Positives = 534/1055 (50%), Gaps = 26/1055 (2%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
              +K  +F+I PS+PF   ++ AL++GTL+E+FR    +PL L++ T+Y+PT+RA + L 
Sbjct: 4    PGRKGCLFSIPPSAPFAHTLVRALVDGTLIESFRPIE-DPLSLSTATLYLPTRRAARTLP 62

Query: 62   SEFIEITGKKSTILPIIKSLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
            + F E+ G +  +LP I+ LGDV E E+F         L PP+  ++R L L RL++ W+
Sbjct: 63   AVFQEVFGGRPVLLPAIRPLGDVDEIEQFLRAEPDGEPLPPPLPALERRLALTRLVMAWK 122

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              L   +  L P+ PL LP S A+A WLA +L  ++D +ETEE  W  L  L  + Y  +
Sbjct: 123  GALRRDVLRLKPDDPLGLPASAADAAWLAADLLALMDEVETEEVDWSQLVGLVPDDYARY 182

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALM-RAEAEHLMKGTKGPIIIAGSTGSI 239
            W +  DFL I    W   L E  A  P   + AL+ R           GP+I+AGSTGS+
Sbjct: 183  WQITLDFLSIVRDAWPAYLAERGAMDPKARRSALIRREAERLRRAPPAGPVIVAGSTGSV 242

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS---------TNITSSNTTYST 290
            PATA L+  VA  PNGAIVLP LD  +  A W  +                 +   +   
Sbjct: 243  PATAELLQVVAGLPNGAIVLPALDMELDDASWTALGGPLPSRIGAIGRPAGVAETPSVPG 302

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNE-MYGRSMVISKSFLPPDTSDMRNTDILENKI 349
            HPQY L  LLD L + R+ V  LG      +  R  ++S++  P +TSD     +    +
Sbjct: 303  HPQYGLKLLLDRLGLGRDRVAPLGGPETADLALRDRIVSEALRPAETSDAWTGFLERTPL 362

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
               +   SDVAL+ A NE EEA+++A+ LR +++   + +AL++ DR LARRV  +L R+
Sbjct: 363  AARRAALSDVALLSARNEVEEALAVAVVLREAVER-GETAALVSPDRMLARRVAEDLGRW 421

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            GI +D SAG PL  T  + +         +    + + +L+KHPLA+ G   + +  A  
Sbjct: 422  GIAVDDSAGRPLDQTPPAILAGLAARLALEGCAPIDLLSLLKHPLARLGLTAREIRAAAR 481

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
            ALE   LRG +       L  L +        + H P W+      D      LVD +  
Sbjct: 482  ALERGVLRGPRPLPGTKGL-VLAVVAARDAAESDHTPRWRKLYD-ADWVAVADLVDRLAH 539

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             + PL      K++      +          L  + +DE      L+  E G  L+   +
Sbjct: 540  ALEPLEALAEAKDAL----PVETLAAAHAEVLYRLAVDEAGTDAELYSGETGDALALFLA 595

Query: 590  KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
             ++E G   +     EW  +   L+ G  V+ ++     + ILG +E+RLL  D ++LGG
Sbjct: 596  GLLEAGGAGLCIVPAEWPSVFAALMSGTAVRRRLPGDPRIQILGPMEARLLRPDLVVLGG 655

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
            LNEGVWP+ T  +P+L+R M+ DL L   E+ IG AAHDF    G R ++  R+ R +  
Sbjct: 656  LNEGVWPQRTRNDPWLNRPMKRDLGLDPPERRIGAAAHDFAQGLGARRVVLARAERADGA 715

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQP 767
            PT+ASRWLQRL+ L G +    +  RG+ YL     LD          RP+P P L A+P
Sbjct: 716  PTVASRWLQRLVTLVGPEIEAEMTARGRTYLRLAGLLDRPEGPVRPASRPEPRPALPARP 775

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
            +  S +EI++L+ DPYA++ARRIL L+ +      P   D+GTL H+ +   +       
Sbjct: 776  KRLSVTEIERLVRDPYAIFARRILGLEPVDPVGGVPGAADKGTLIHDALARFLTDWDGPY 835

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
                   + +I ++ F   +  P I  +W   F +I+  F+  E    + + + F+ I  
Sbjct: 836  DDSAVRRLVEIGETMFSPLDAFPAIRALWWPRFERIARGFVAFEAARAAGLRERFLEIGG 895

Query: 888  KMA--IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
             +   +  I   LTG ADRIDLL  G   + DYKTG  P       L+ PQL LEAA ++
Sbjct: 896  GVDLALPGIEFRLTGRADRIDLLDDGTYAVIDYKTGQVPSGNQVATLLAPQLPLEAAMIR 955

Query: 946  AGSFSQIDCR-KVANLFYIRLKQ-KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
             G F+ +     V++L YI+LK  +  +   T   +  S ++L+E++ K L  +V    +
Sbjct: 956  RGGFADVPAGRPVSDLLYIQLKGAREALKVETRAPRDGSVEDLAEEAWKRLEALVAAYAD 1015

Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
              + ++S  R+ ++  +   YDHLARV EW    +
Sbjct: 1016 PARGYLSRARVLQERAMDGPYDHLARVREWSVGSE 1050


>gi|90421910|ref|YP_530280.1| hypothetical protein RPC_0386 [Rhodopseudomonas palustris BisB18]
 gi|90103924|gb|ABD85961.1| DNA helicase/exodeoxyribonuclease V, subunit B [Rhodopseudomonas
            palustris BisB18]
          Length = 1042

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 303/1058 (28%), Positives = 481/1058 (45%), Gaps = 50/1058 (4%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             VF    S+PF R +I AL+ G LV  F     NP  LA  T+Y+PT+RA +  R  F++
Sbjct: 2    RVFNTPASAPFLRTLIAALVEGRLVPGFEAR-ANPERLAEATLYLPTRRAGRMAREIFLD 60

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTA-------DLLLSYNLNPPVSNIQRLLELARLILIW 119
            +    + +LP I +LG + E++          D + S  + P ++ + R L LARL+  W
Sbjct: 61   VLQSDAVLLPRIVALGGIDEDELAFADDAEPFDGVASLEIPPNLAELDRRLILARLVAAW 120

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179
              +L              +   PA+A+ LA +LA ++D + T + +W  L  L  ++   
Sbjct: 121  GKELA-----------PLVVGGPASALALAGDLARLMDDMVTRKVEWAALDGLVPDELDN 169

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
            +W L   FLKIA ++W   L       P   +  L+ AEA+ L     GP+I AGSTGS+
Sbjct: 170  YWQLTLGFLKIAREHWPAYLAANALIEPAARRDLLIEAEAKRLAAHHTGPVIAAGSTGSM 229

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAK 298
            PATAR +  +A  P GA+VLPGLD H+    W  I   +  N  +     S HPQY+L  
Sbjct: 230  PATARFLRAIAALPQGAVVLPGLDTHLDDDAWRKIGGIRDANGKAVTPPSSNHPQYALHA 289

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP-NIQKCFS 357
            LL+   I+R DV  LG       GR ++ S++  P + +   +  + E  +  NI    +
Sbjct: 290  LLETFGIERRDVAPLGA--PAPRGRELLASEAMRPSNATAQWHQRLAEPAVEQNIAAGMT 347

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            ++A+I ADN   EA++IA+A+R + + N K +AL+T DR LARRV   L R+ +  D S 
Sbjct: 348  ELAVISADNPELEALAIAVAMRQARELN-KSAALVTPDRALARRVMAALGRWKLPFDDSG 406

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L  T           A     +   +  L+KHPL + G    +   A   LE   LR
Sbjct: 407  GDALIDTPPGVFARLSAQAATAQLEPATLLALLKHPLLRLGQAPGFWRGAIETLEQAVLR 466

Query: 478  GNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
            G + +     L       +  +      + +  H    ++RL+++  + A  L+  +   
Sbjct: 467  GTRPAAGSAGLSRDFARFRDELGKLRRRETSMLHGSEPRARLNDDALDRAQALIAQLQTA 526

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            + PL T   N+      L  SD        +  +  D+   +      +      +    
Sbjct: 527  LAPLETLDPNR-----PLDFSDLATKHRAVVAALSRDDDGFVAAFDGPQG--NALNTAFD 579

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
             +   S + A   ++ ++         V+    +S++L I G LE+RL   D +ILGGL 
Sbjct: 580  DLPAPSGLAAQPGDYTELFQTAFADRVVRRPEAESASLRIFGPLEARLTQCDRVILGGLV 639

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
            EG+WP     +P+LSR M+  L L   E+ IG +AHDF    G   +I + + +    P 
Sbjct: 640  EGIWPPAPRSDPWLSRPMRHQLGLDLPERRIGLSAHDFAQMLGADEVILSHAAKVAGAPA 699

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
            +ASR+L RL  + G + +   + RGQ YLD+   LD   K     +P P PP +A+P   
Sbjct: 700  VASRFLHRLEAVAGAERWKAAEARGQIYLDYAHALDRPDKVVPITQPMPRPPRDARPLQL 759

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S + I+  + DPY +YA+ ILKL  +          DRG+  H  + E  +        +
Sbjct: 760  SVTAIEDWLRDPYTIYAKFILKLAPLDPVDMPLSAADRGSAIHEALGEFTQVFAQALPDD 819

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                ++ I   HF      P    +W   F +I+H F   E + + ++  +       ++
Sbjct: 820  PAAALRAIGQKHFAPLMERPEARALWWPRFLRIAHWFATWETERRLNVAGVDAETRGTLS 879

Query: 891  IES---IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            I         L+  ADRI+        I DYKTG  P  +  +  + PQL+LEAA L+ G
Sbjct: 880  IPLDATRRFVLSARADRIERRADRTFAILDYKTGRPPTGKQVRMGLSPQLTLEAAILREG 939

Query: 948  SFSQIDCR-KVANLFYIRLKQKFKIDCI-------TNDKKKYSADELSEKSLKNLIEIVT 999
             F  I     V+ L Y++L                   ++    D+ + ++   L  ++ 
Sbjct: 940  GFEGIAAGSSVSELVYVKLSGNNPPGEEKILELKRDRAEEALFPDDAAIEARAKLEALIR 999

Query: 1000 LLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
               +   P+ S L L   +N   +YD LAR+ EW    
Sbjct: 1000 KFDDATTPY-SSLNLPMWANRYGDYDDLARIKEWSAAG 1036


>gi|300023816|ref|YP_003756427.1| double-strand break repair protein AddB [Hyphomicrobium denitrificans
            ATCC 51888]
 gi|299525637|gb|ADJ24106.1| double-strand break repair protein AddB [Hyphomicrobium denitrificans
            ATCC 51888]
          Length = 1038

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 298/1051 (28%), Positives = 479/1051 (45%), Gaps = 40/1051 (3%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
            N+FT+ P  PF + +  A+LNG L       P + L L ++T+ +PT+RA +  R  F+ 
Sbjct: 4    NIFTLPPGVPFLKAVARAILNGDLPAPGGAAP-DLLKLPNITLLLPTRRAARTARDAFLS 62

Query: 67   ITGKKSTILPIIKSLGDVVEEKF--------TADLLLSYNLNPPVSNIQRLLELARLILI 118
            +    + I+P I+ + +  +++               + +  P +  + R L L +LI  
Sbjct: 63   VANTPAIIMPRIRPISEGDDDRSLISSLAGDGLSSASALDQPPAIDPLDRTLVLMQLISH 122

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
            WR  +     D    S      +PA +  LA  L  ++D IE E     D+  L  E Y 
Sbjct: 123  WRATMAQSDADRSSGS------TPAQSARLAAELGKLMDDIERENVSLSDIQNLVPETYA 176

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP-IIIAGSTG 237
              W    DFLKI +++W   L     +SP   + AL+ AEAE + K      +I+AG TG
Sbjct: 177  EHWQKTVDFLKIVTEFWPAHLEASGMTSPEARRNALILAEAERIAKLAPDEIVIVAGITG 236

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            SIPAT  LM  VA  P+GAIVLP LD  +  A W+ I           + +  HPQ+ L 
Sbjct: 237  SIPATVELMRAVAARPSGAIVLPALDQSLDDASWSAI----------VSGHPEHPQFGLK 286

Query: 298  KLLDFLDIKREDVKRLG--NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
            KLLD L+++R  V  L      +    RS  +S+S  P  ++D  +          ++K 
Sbjct: 287  KLLDGLNVERGAVLTLPGFEAGDVDRTRSAFVSESMRPSSSTDQWHRYATTADKGELEKA 346

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
             + ++LIEA + ++EA ++A+ LR +++   + +AL++ DR LARRV + L  +GI +D 
Sbjct: 347  LAGISLIEAPSAQDEAETVALILREAIETPGQTAALVSPDRLLARRVAIRLEAWGIRVDD 406

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            SAG P + T+  + L  ++ A+           L++HPL +  F    + +   ALE+ A
Sbjct: 407  SAGRPFAKTVPGAFLALVIGAMVSEFAPAETMALLRHPLCRLKFNAFDIRKYARALEISA 466

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
             R +   + +  +++ +      +     +     RL  ED + A  LV  +     PL 
Sbjct: 467  FRTSYLGHGLDGIRAALETAERDRAEKKRMHPAARRLWSEDCDGARELVARLAAAFQPLA 526

Query: 536  TYKTN--KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
                     +              +  L +           LW  E G T S  F+K+++
Sbjct: 527  DLYAANGDQTLAEFARAHAEAAEALAQLPDDDAAAEASANPLWQGESGDTASRFFAKLLD 586

Query: 594  TG-SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
                 +  +A ++ D+   L+  E V+ +      + I G  E+RL   D L+LG LNEG
Sbjct: 587  DATPAVAISAADYADLYATLLARENVRERTAVHPRISIWGPFEARLQQPDVLVLGSLNEG 646

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
             WP+      +L+R M+ DL L + E+ IG+AAHDF    G + +  TR+ + + +PT+ 
Sbjct: 647  TWPEAAEPGAWLNRPMRRDLGLPSPEEEIGRAAHDFTSLLGAKTIYLTRAEKVDGVPTVP 706

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY-TTKQPHYKRPKPFPPLEAQPRTYS 771
            SRWL R+  L      +++    + +L W R  D    K+   K P+P P L  +PR  S
Sbjct: 707  SRWLMRMRALLKGMKLESVLVADKPWLAWARARDRIVGKRIAIKPPEPRPALALRPRRMS 766

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             ++I++ I +PYA YAR ILKL+ +P     PD + RG L H++++       ++   + 
Sbjct: 767  VTDIERWIANPYATYARHILKLEPLPPLGASPDASLRGALVHDVLSRFANAFPDRLPDDP 826

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
               +++I     +       I   W     +    F E EEK +  +  +   I   + +
Sbjct: 827  LAELEKIAADVLQTYTGNARIAAFWMPRLKRFLSWFAEGEEKRREGVRSVIAEISGALVL 886

Query: 892  ESI--GIHLTGFADRIDLLKSGFVDIT-DYKTGDNPKKETAQKLIDPQLSLEAAALK-AG 947
                    LT  ADRID   +G   I  DYKTG  PK+E  +    PQL LEAA      
Sbjct: 887  APTPDPFTLTARADRID--DTGSAVIITDYKTGAIPKQEWVENGRSPQLPLEAAIALGET 944

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
             F  +  R V  L YIR             K       L+ ++ + L  ++    +   P
Sbjct: 945  GFPNLAGRTVEALRYIRASGGEPAGEERAIKS-NDIGTLAAQARQGLERLIAEFDDPATP 1003

Query: 1008 FISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
            + +  R S   +    Y  LARVAEW    D
Sbjct: 1004 YRALRRPSYSYD-YDAYAQLARVAEWSAHVD 1033


>gi|89067400|ref|ZP_01154913.1| putative Helicase/Exonuclease [Oceanicola granulosus HTCC2516]
 gi|89046969|gb|EAR53023.1| putative Helicase/Exonuclease [Oceanicola granulosus HTCC2516]
          Length = 977

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 255/1044 (24%), Positives = 423/1044 (40%), Gaps = 88/1044 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
               +P VF + P   F  E++  L         R   L P  LA V ++V T+R  + LR
Sbjct: 4    PASRPRVFALPPGVDFGAELVRGL-------RQRSADLAPDALARVELFVNTRRMQRRLR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              +    G   T+LP ++ + D+  +           L PPV  ++R  E+ RL+     
Sbjct: 57   EVY---DGGPPTLLPRLRLVTDLALD-------PKAGLPPPVPPLERRFEILRLVGALLE 106

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              P +                A    L+ +LA ++D ++ E    E LHAL+       W
Sbjct: 107  SDPSLAPR-------------AALFDLSDSLAGLLDEMQGEGVDPEALHALEGTDQSEHW 153

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                 F+++  +Y+       +       +            +    P+I+AGSTGS  A
Sbjct: 154  QRTLAFVRVVERYFDAAGGTPDR--EARQRRVAEGLAERWGAQPPAHPLIVAGSTGSRGA 211

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T   M  VA  P GA+VLPG D  +P A+W  + +          T   HPQ+   +LLD
Sbjct: 212  TGLFMEAVARLPQGALVLPGFDFDMPAAVWRGMGDGL--------TAEDHPQFRFKRLLD 263

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L+I   DV+   +       R+ ++S S  P   +D   T+     + +++   + + L
Sbjct: 264  RLEILPRDVEPWTDTGPASPARNRLVSLSLRPAPVTDAWLTE--GPALGDMRAATAGLTL 321

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA   R EA +IA+A+R ++++  +  ALIT DR L R+V   L R+ I  D SAG PL
Sbjct: 322  VEAPTPRAEAETIALAMRQAVED-GRTVALITPDRMLTRQVSAALDRWDITPDDSAGQPL 380

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +     L  +   I +      + +L+KHPL   G        A   LEL   R    
Sbjct: 381  PQSPPGRFLRHVAALISERVTGETLLSLLKHPLCHSGGDRGPHLLATRELELHLRRHGPP 440

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                  L+                       + E    A  L   +     P        
Sbjct: 441  FPTAESLRGW----------------GGGHRNPERTPWAEWLAGVLETIPQP-------- 476

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA- 600
                    ++D     +   + +          LW E  G+    + + +  +       
Sbjct: 477  ----AERPLADHLGAHMAIAEALAAGPDGGAGELWDEAAGRKALEIRAALEASAGAAGVL 532

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                ++D+ T +++G  V+        + I GTLESR+   D +ILGGLNEG WP+  A 
Sbjct: 533  TTRNYVDLFTGVLNGAEVRNPTAGHPLVQIRGTLESRVQGADIVILGGLNEGTWPEVPAP 592

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
            +P+L+R M+  + L   E+ IG +AHD++ A     +  TR+ R +   T+ SRWL RL 
Sbjct: 593  DPWLNRTMRHRVGLLLPERRIGLSAHDYQQAIAGPEVWLTRARRSDEAGTVPSRWLNRLT 652

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDY--------TTKQPHYKRPKPFPPLEAQPRTYSF 772
             L       +  +           +            +     RP P PP+ A+PR  S 
Sbjct: 653  NLLEGLTTTHGPEALAAMRARGAAVVAQAAAIVRAPDRIEPAPRPSPAPPVAARPRQLSV 712

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            ++I++LI +P+ +YAR++L+L  +      PD   RG + H  +   ++  ++ + P   
Sbjct: 713  TQIQRLIRNPFHIYARKVLRLQALDPLVPGPDALMRGNILHAALEAFVEADVDPSLPWAR 772

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
              +    +         P    +W     +++  FLE E + +       + +  ++ + 
Sbjct: 773  RTLLAKTEEALADACPWPAHRRLWFARMERVADWFLETEAERRRRGRPAHLEVSGEITLH 832

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             + + L G ADRIDL   G   + DYKTG  P +   +K  D QL LEAA +  G+F  +
Sbjct: 833  DLELTLRGKADRIDLTPEGRAILYDYKTGTPPSQPQQEK-FDKQLLLEAAMIARGAFEGL 891

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
                 A+  +I L  K  I     D              +   E++   +   + + S  
Sbjct: 892  GRLVAADAQFIGLGAKPAIVSAPLDAAPPDV------VWEEFRELIRAWRTPTKGYSSWA 945

Query: 1013 RLSEKSNIQSEYDHLARVAEWREE 1036
                + +   +YDHLAR  EW   
Sbjct: 946  FPFSERDR-DDYDHLARRGEWDPS 968


>gi|182679137|ref|YP_001833283.1| double-strand break repair protein AddB [Beijerinckia indica subsp.
            indica ATCC 9039]
 gi|182635020|gb|ACB95794.1| double-strand break repair protein AddB [Beijerinckia indica subsp.
            indica ATCC 9039]
          Length = 1076

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 289/1089 (26%), Positives = 483/1089 (44%), Gaps = 80/1089 (7%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             VFTIAP SPF +  + AL +G +++ F     +P  LA  TIYVPT+RA + L  E   
Sbjct: 5    KVFTIAPGSPFLKTFVTALKDGKIIDGF--TIADPFALAKTTIYVPTRRAARALADELAN 62

Query: 67   ----------ITGKKSTILPIIKSLGDVVE------------EKFTADLLLSYNLNPPVS 104
                           + +LP IK  G + E            +  +++  L  +L    S
Sbjct: 63   SLIFSSPGSGAAVPSAMLLPRIKPFGGIEETETSLLFDRATLDDPSSEDSLLEDLPLAAS 122

Query: 105  NIQRLLELARLILIWRNKLPDIIKDLYPESP--------LSLPISPANAIWLAKNLADII 156
             I R ++L  LIL W   L   I  + P+           S+  S  +A  L+  LA +I
Sbjct: 123  EIGRRMQLTELILKWAEALNHAIVRIGPDGTIESDTTERFSVARSVTDAWHLSGQLAQLI 182

Query: 157  DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
            D +  E+  W  L  L   ++  +W +  +FL IA + W E   E         ++ L+ 
Sbjct: 183  DELIIEDITWSQLDPLVLPEFDAYWRITMNFLNIAIESWPEICSEQGWIDAAKRRVLLLA 242

Query: 217  AEAEHLMKG-TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
             EA  L +G  +GP+I  GS G    T+ L++++A  P GA++LPGLD  +  A +  I 
Sbjct: 243  REARKLDEGTAEGPVIALGSPGFNRTTSALLASIARAPQGAVILPGLDQDLDEAAFKMID 302

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                           HPQ    +LL  L + R+DV  LG +S  +  R   +S++  P D
Sbjct: 303  H----------ESFGHPQAVYVRLLPILGVTRQDVMPLGEMSPMLIRRHGFLSEALRPAD 352

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395
            T+D   T  + N   ++    S + +IEA +ER+EA+++AIALR  L+   K +AL+T D
Sbjct: 353  TTDEWITYQVRNVSTDLADALSGITMIEAQDERQEALALAIALREILETPGKTAALVTPD 412

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            R LARRV+ EL R+ I ID S G PL+T+    +    L  I    D   +A L+ +   
Sbjct: 413  RELARRVRTELLRWNIEIDDSGGDPLNTSPRGLLARLALACITSGMDAKDLAALLANEQV 472

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
              G     +       E+  LR         D   + L        +T+    ++R+  E
Sbjct: 473  SLGLGRDRIKALAPQFEIAILRSAPVM-RFFDQPDIALTMARDAAFDTYAHPAKARIEAE 531

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL------DEH 569
            D +    +++ +   ++PL   +       G   ++ W       L  +         + 
Sbjct: 532  DWDGLAQILERLRDVLSPLRALR-------GTWPLARWIAAHRMVLDGLVRDADQTDGQD 584

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
            ++   L   E+   L +LF ++  T    +  +   +    T +     ++        L
Sbjct: 585  QQDRTLEAGEDAAALEALFDELSGTTPQGLLFDVASYAAFFTDISGEVRLRGPRRAHPRL 644

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             ILG +E+RL+  D ++LGGL+E +WP     + FL+R M++ L L   E+ +GQA HDF
Sbjct: 645  KILGLIEARLMQADVMLLGGLDETIWPPAAQMDAFLNRPMRAALGLTPPERRLGQATHDF 704

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
              A G   +I +R+ +    PT+ASR +QR+  L G D + +  ++G+ +L +   LD T
Sbjct: 705  TQAMGAESVILSRAKKRGGTPTVASRLIQRMAALAG-DVWQSCLEQGERFLAFAEALDRT 763

Query: 749  -------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                     Q    RP P PP+  +P   S ++I+ L  DPYA++A +IL L  +     
Sbjct: 764  PINPADHRPQRPLGRPNPKPPVGLRPTHLSVTQIETLRRDPYAIFAEKILGLKALDALGA 823

Query: 802  DPDRTDRGTLFHNIITELIKKRI-NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
              DR D G   H ++    K         +++  +   +          P          
Sbjct: 824  GADRRDDGMAVHAVLERCGKLHPTGPLPADMDEQLLSWLREALAARLDDPDFSAFQWPRL 883

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITD 917
             K    +L  E + + ++ +I V    ++ I   +     LT  ADR++  +   + + D
Sbjct: 884  QKAIDVYLAFEAERRDNLVRIEVETFGRLPIDLADGSRFLLTARADRLEFHRDQSLVLVD 943

Query: 918  YKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ---------K 968
            YKTG  P  +  +  + PQL+LEAA  K G+F      +     Y++L           +
Sbjct: 944  YKTGAPPSSKEIRTGLAPQLTLEAAMAKRGAFGSDAIAQAYGGLYLKLGGADGGQVRPVE 1003

Query: 969  FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            F      N  +  + D+++E+  + L+ ++   ++    + S L   + +++   YDHLA
Sbjct: 1004 FSSGRGKNKDQSIAFDDVAEQHFQGLLILLNQFRDPATGYPSRLAP-KFAHVPLPYDHLA 1062

Query: 1029 RVAEWREEY 1037
            RV EW +  
Sbjct: 1063 RVNEWAQGG 1071


>gi|288959561|ref|YP_003449902.1| double-strand break repair protein [Azospirillum sp. B510]
 gi|288911869|dbj|BAI73358.1| double-strand break repair protein [Azospirillum sp. B510]
          Length = 988

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 282/1039 (27%), Positives = 470/1039 (45%), Gaps = 74/1039 (7%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            P +++I   +PF   +   ++             +P+ LA VT+ +PT+RA + L++ F+
Sbjct: 4    PKLYSIPAGAPFVDRLAAGIMERV--------GGDPMALAGVTVLLPTRRACRSLQAAFL 55

Query: 66   EITGKKSTILPIIKSLGDVVEEKFTAD----LLLSYNLNPPVSNIQRLLELARLILIWRN 121
              +G + T+LP +  LG++     +        +  +L   +S + R + LARLIL    
Sbjct: 56   RRSGGQPTLLPRMAPLGELDAGDLSLTEEELPDVPLDLPEAISPLNRQMTLARLIL---- 111

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
                            L  + A A+ L  +L  +ID + TE   ++ L +L  E Y   W
Sbjct: 112  ------------GADGLSATTAQAVRLGADLGRLIDAVWTERAGFDKLESLVPEDYAEHW 159

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIP 240
             +   FL+I ++ W   L     + P   +   +  +A         G +I AGSTGSI 
Sbjct: 160  QVTLKFLRIITEVWPAILESTGETDPAKRRNLALETQAALWQAAPPPGMVIAAGSTGSIA 219

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
            AT  L++ +A  P GA+VLPGLD     AIW+ I               +HPQ+ L++L+
Sbjct: 220  ATTELLAVIARLPQGAVVLPGLDTGADDAIWDAI-----------AADESHPQHGLSQLI 268

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
              L + R++V    +       R+ +I+++  P  T++        +           + 
Sbjct: 269  RLLGVTRDEVWPWTDAPEPRGARARLIAEAMRPAATTEGWRELSGLD-----ASALDGLT 323

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
             I+A    EEA  IA+ +R +L+   + +ALIT DRNL RRV + L R+GI ++ S G P
Sbjct: 324  RIDAATSEEEAQVIALLMRHALETPARTAALITPDRNLGRRVAMALARWGILVNDSGGQP 383

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L+ T   + L             +A+  L KHP+A  G        A  ALE + LRG +
Sbjct: 384  LAHTAVGTYLRLTAELAASRVHPLALLALAKHPMAAGGRDSGDFRAAARALERIVLRGPR 443

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
             +     + + +                     EE +E+    +  + Q   P       
Sbjct: 444  PAEGFDGILAALERADR-------------FDHEEQQEVLRGWLVDLGQRAAPF------ 484

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              +  G   ++D  +  V   +++  D+       LW +++G+  +     +++  +   
Sbjct: 485  LEALAGETPLADLVRAHVAFCESLAADDGLEGKDRLWRQDDGEEAARFIHDLLDAAAGFP 544

Query: 600  A-NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
            A  A ++  ++  L+    V+P+      LFILG +E+RL + D  ILGGLNEG WP   
Sbjct: 545  AIPAKDYPALLDALMSARAVRPRYGLHPRLFILGPMEARLQHLDLTILGGLNEGTWPPAA 604

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
            A +P++SR M+ +  L + E+ +G +AHDF  A G   ++ TR+ R    PT+ SRWL R
Sbjct: 605  AADPWMSRPMRREFGLPSPERLVGMSAHDFAHACGAPEVVLTRAARVEGTPTVPSRWLLR 664

Query: 719  LLVLGGTDFFDN-LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            L  +      D  +++RG C+L W R LD   +      P+P PPL A+PR  S +EI+ 
Sbjct: 665  LETVLKALDLDGVIEERGACWLGWARGLDEPDRVRPVSAPEPRPPLSARPRKLSVTEIET 724

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
             + DPYA+YAR  L+L  +     DP  +DRG + H+ +   ++        +    +  
Sbjct: 725  WMRDPYAIYARHALRLRALDPIAADPGASDRGQIIHDTLDAFVRDHPGPLPHDALDRLIA 784

Query: 838  IIDSHFEKEN-LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--ESI 894
            +    F       P +   W   F +++  F++ E + +  +  +   +P ++ +     
Sbjct: 785  LGRERFGPLLRSHPDVWAFWWPRFERVAGWFVDLERERRPRLRPLATEVPGRLELSGPGG 844

Query: 895  GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
               LT  ADRID    G + + DYKTG  P     +    PQL LEAA   AG FS +D 
Sbjct: 845  PFALTAKADRIDRGPDG-LVVIDYKTGTPPSAREIELGFAPQLPLEAAIAAAGGFSGVDK 903

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014
              VA L + RL              K     L+E++   L  ++    + + P+ S  R 
Sbjct: 904  GAVAELAFWRLSGGDPAGE--EKPVKGDPAALAEEARAGLEALIARFDDPQTPYRSRPRP 961

Query: 1015 SEKSNIQSEYDHLARVAEW 1033
            +  +   ++Y HLARV EW
Sbjct: 962  AM-APRYTDYAHLARVQEW 979


>gi|163797152|ref|ZP_02191107.1| Inactivated superfamily I helicase [alpha proteobacterium BAL199]
 gi|159177668|gb|EDP62221.1| Inactivated superfamily I helicase [alpha proteobacterium BAL199]
          Length = 1005

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 293/1048 (27%), Positives = 465/1048 (44%), Gaps = 63/1048 (6%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             +++I    PF   +   L              +PL LA  T+ +PT+RA++     F+ 
Sbjct: 5    RIYSIPVGVPFLDALALGLWAAV--------GEDPLALARATVLLPTQRAVRSAAEAFLR 56

Query: 67   ITGKKSTILPIIKSLGDVVEEKFT------ADLLLSYNLNPPVSNIQRLLELARLILIWR 120
            +   +  +LP ++++ DV E++        A +  + +L P +  ++R L LARL+L + 
Sbjct: 57   LGDGRPMLLPTLQAIADVDEQELDLAHGDDAGVAAALDLPPAIPALRRQLLLARLVLAYA 116

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
            ++L            ++ P SP  A+ LA  LA +ID ++ E   +E L  L   +Y   
Sbjct: 117  DRLEADG--------VAAPRSPEQAVRLAAALAGLIDQVQAEGLAFEALTGLVPSEYAEH 168

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSI 239
            W L   FL I ++ W + L E  A  PV  + ALMRA A          P+IIAGSTGS+
Sbjct: 169  WGLTLRFLTIVTELWPKWLEEQGAVDPVVRRDALMRARATAWQAAPPSDPVIIAGSTGSV 228

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA LM+ V   P G +VLPGLD     ++W ++            T + HPQ+ L +L
Sbjct: 229  PATAGLMTAVLGLPQGTLVLPGLDQDSDDSVWASVG-----------TDAAHPQHGLHRL 277

Query: 300  LDFLDIKREDVKRLGNVS---NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK-- 354
            L  L I R DV      +        R+ ++ ++  P  T++           P+     
Sbjct: 278  LVGLGIPRGDVGLWPGAATFVPATAARARMLREAMRPAATTEAWRMLATRPSEPDAPATG 337

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
             F  +  +EA + REEA +IA+ +R  L+   + +AL+T DR+LARRV  EL R+ + +D
Sbjct: 338  AFDGIRRLEAPSPREEAGAIAMLMREVLETPGRTAALVTPDRSLARRVASELERWDLTVD 397

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
             SAG PL+ +  ++ L  + +   +    + +   +KHPLA  G       R    LE +
Sbjct: 398  DSAGRPLAESAPAAFLRLIGDLAAEQAAPVPLLAALKHPLAAGGQAPDAFRRMVRRLERL 457

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
             LRG + +     L+  V                      E +   ++ VD +   + PL
Sbjct: 458  VLRGPRPAPGFTGLRRAVEVLEDKHA--------------EARAGLLVWVDGLAGRLGPL 503

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
            +            ++                 D+      LW  + G+ L+ LF ++ + 
Sbjct: 504  LDTLNRPAVAATEMA----DAHARAAEALAQSDQQSGADRLWRGDAGEALARLFDEMRDA 559

Query: 595  GSCI-KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
               +       W  +   L++   V+P+      L ILG LE+RL  FD +ILGGLNEG 
Sbjct: 560  LDALEPVPGRAWPGLFEALLESRVVRPRWGAHPRLHILGALEARLQRFDRVILGGLNEGT 619

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
            WP + A +P++SR M+ D  L   E+ IG AAHD  MA G   ++ TR+ R    PT+ S
Sbjct: 620  WPADPAPDPWMSRPMRRDFGLPAPERRIGLAAHDVSMAFGAPEVVLTRATRVEGTPTVPS 679

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
            RWL RL  +      +   +     + W  +LD        K P P PP+  +PRT S +
Sbjct: 680  RWLLRLETVARALGAEAEFRSDPAPVAWHGQLDRPASVEPGKAPLPCPPVHVRPRTLSVT 739

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
             I   + DPY++YA RIL L  +     DP+  +RG   HN +   +        P+   
Sbjct: 740  RIDTWLRDPYSIYASRILDLRALDDLDSDPNAAERGNAIHNALDAFVAAYPRDLPPDPLQ 799

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
             + +   + F      P +   W   F +++  F+E E   +  +         ++A+  
Sbjct: 800  RLLEYGQASFADHLDRPGVWAFWWPRFERVAAWFVEVERDRRRGLSATVTEQKGRLAVPG 859

Query: 894  --IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
                  LTG ADRID +  G   I DYKTG  P K   +    PQL LEA  L  G F  
Sbjct: 860  PAGDFTLTGIADRIDRMGDGTYAIVDYKTGGYPSKNDLKNGAAPQLPLEALILAGGGFPD 919

Query: 952  IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
            +    V++L Y R+        I   +   +  EL  ++   L  ++    + + P+ S 
Sbjct: 920  LPVAPVSSLAYWRVGGGDPPGAIDAVESGVA--ELVAEAEAGLRTLIATFDDEQTPYHSV 977

Query: 1012 LRLSEKSNIQSEYDHLARVAEWREEYDI 1039
                 K    ++Y HLAR+ EW    + 
Sbjct: 978  PDAGRKPRF-NDYAHLARIGEWAAGDED 1004


>gi|260575781|ref|ZP_05843777.1| double-strand break repair protein AddB [Rhodobacter sp. SW2]
 gi|259021934|gb|EEW25234.1| double-strand break repair protein AddB [Rhodobacter sp. SW2]
          Length = 979

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 263/1046 (25%), Positives = 440/1046 (42%), Gaps = 91/1046 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             +  P VF +AP   F  +++  L         R     P  +A V +YV T R  + + 
Sbjct: 7    PDPGPRVFAMAPGVDFPAQLVAGL-------RQRLQGQPPEAMARVQLYVNTTRMARRIT 59

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              F       +  LP I  + D+ +    A       +   +  ++R L+L +L+    +
Sbjct: 60   GLFT---ATGAGFLPHIGLVTDLSQHVALA------GIPAAIPPLRRRLQLTQLVARLLD 110

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              PD+                A    L+ +LA ++D ++ E    E + AL    +   W
Sbjct: 111  AQPDLAPR-------------AALYDLSDSLATLLDEMQGEGVSPETIAALDVSDHSAHW 157

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                 F+ I   ++          +    ++ +    AE       GP+I+AGSTGS   
Sbjct: 158  QRTQKFMAIVLPFFASTSRPD---AETRQRLVVQALAAEWQKNPPPGPVIVAGSTGSRGT 214

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            TA  M  VA  P GA+VLPG D  +P A+W  + +  T           HPQY   +LL 
Sbjct: 215  TALFMQAVARLPQGALVLPGFDFDMPAAVWQGLGDALTG--------EDHPQYRFHRLLS 266

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             LD+   DV+    V+     R+ +IS S  P   +D    +     + ++ +  + + L
Sbjct: 267  GLDLSPTDVQPWTAVNAPSPARNRLISLSLRPAPVTDQWLIEGKR--LHDLAQATAAMTL 324

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            I A   R EA++IA+ LR + ++  K +AL++ DR L R+V   L R+GI  D SAG PL
Sbjct: 325  IAAPTPRAEALAIALILRQAAEQ-GKVAALVSPDRGLTRQVTAALDRWGILPDDSAGRPL 383

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            + +    +L  +     +     A+ TL+KHPL   G       R    LEL   +    
Sbjct: 384  ALSAPGRLLRHVAALFGQRMTCEALLTLLKHPLTASGTDRGEHLRFTRDLELKLRKYGPP 443

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                  L                        + +     +L  D ++Q +  +       
Sbjct: 444  FPSAAMLTDWA--------------------ARQSDPAVLLWADWLVQALDGVEDV---- 479

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHR-KLPNLWFEEEGKTLSSLFSKII-ETGSCIK 599
                GN  ++D     +   + +           LW ++ G+   +   ++  E      
Sbjct: 480  ----GNRPLADHVAQHLALTEALARGPAGLGTGELWLKKPGEAALAAVQELAREAPYGGD 535

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                ++ D+   ++    V+  ++    + I GTLE+R+   D +ILGGLN+G+WP+   
Sbjct: 536  LTPADYRDLFEAILAKGEVREDVQSHPQIMIWGTLEARVQGADLVILGGLNDGIWPQMPP 595

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R M+    L   E+ IG +AHD++ A     ++ T + R     T+ SRWL RL
Sbjct: 596  PDPWLNRQMRQKAALLLPERRIGLSAHDYQQAIAATEVVLTHATRNAEAETVPSRWLNRL 655

Query: 720  LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK-RPKPFPPLEAQPRTYS 771
              L       GG      ++ RG  +L     L+          RP P PP+EA+P   +
Sbjct: 656  QNLLRGLPGQGGPQALAAMQARGATWLRLAEALETPAATVPAANRPAPRPPVEARPAQLA 715

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             + I+ LI DPYA+YAR IL+L  +   ++ PD   RG+L H I+   +++R  +   E 
Sbjct: 716  VTGIRTLIRDPYAIYARTILRLKKLDPLRQTPDARLRGSLLHAILQRFVQERPAETRAEA 775

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
               + +I D    ++   P    +WR    + +                + +     +A+
Sbjct: 776  RLRLLEISDQVMAEQAPWPAARALWRARLERAADF--FLAADAAQGGTSVILESGGAIAL 833

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
              +  +LT   DRID L  G + I DYKTG  P ++  Q   + QL LEAA  + G+F+ 
Sbjct: 834  APLPFNLTAKPDRIDALPDGRLHILDYKTGTPPTEKQ-QAQFEKQLLLEAAMAERGAFAP 892

Query: 952  IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
            I  R+VA + Y+ L    K+       +    +EL  K  ++L +++       Q + + 
Sbjct: 893  IGARQVARISYVGLGTSPKL------VETEVTEELLGKVWEDLHKLIARYLTRAQGYAAR 946

Query: 1012 LRLSEKSNIQSEYDHLARVAEWREEY 1037
             R   +     +YDHLAR  EW    
Sbjct: 947  -RAVFEERFPGDYDHLARYGEWETSD 971


>gi|310817178|ref|YP_003965142.1| exonuclease-like protein [Ketogulonicigenium vulgare Y25]
 gi|308755913|gb|ADO43842.1| exonuclease-like protein [Ketogulonicigenium vulgare Y25]
          Length = 972

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 267/1045 (25%), Positives = 432/1045 (41%), Gaps = 94/1045 (8%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            ++   +F + P + F   +I  L +       R     P   A VT+YV T R  + LR+
Sbjct: 4    DESARLFGLPPGADFPAALIAGLHD-------RMAGRAPEDWARVTLYVNTARMQRRLRN 56

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
             F +     + ILP I+ + D+  +   A      +L  PV  +QR LEL RLI      
Sbjct: 57   LFDQ---GGAMILPRIRLVTDLALDPVAA------DLPLPVPALQRRLELTRLIARLLES 107

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
             PD+                A    LA +LA ++D ++ E    + + AL        W 
Sbjct: 108  APDLAPR-------------AALYDLADSLAALMDEMQGEGVSPDVIAALDVSDQSGHWQ 154

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPA 241
               +FLKI S Y+ +             Q  ++     H        PIIIAGSTGS  A
Sbjct: 155  RTLEFLKIISGYFDQ----TGQPDREARQRMVIERLVAHWQIAPPTDPIIIAGSTGSRGA 210

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  LM  VA  P GA+VLPG D  +P   W  I         S      HPQ+   K+ D
Sbjct: 211  TQLLMQAVARLPQGAVVLPGFDFDMPDHAWEAIG--------SAVAAEDHPQFRFRKIAD 262

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L +   D++   + +     R+ +IS S  P   +D     +    + ++    + + L
Sbjct: 263  GLGLALHDIRPWTSSNAPDPARNRLISLSLRPAPVTDQW--RLEGKDLGDLNLATAQMTL 320

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA + R EA +IA+ LR +LDE  + +ALIT DR L R+V   L  + +  D SAG PL
Sbjct: 321  LEAPSPRLEAQTIALRLRAALDE-GRTAALITPDRMLTRQVAAALDLWSVKPDDSAGQPL 379

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              +    +L  +     +  D  ++ +L+KHPL              + LE         
Sbjct: 380  PLSPPGRLLRQVARLFGQRLDAESLLSLLKHPLTHADANRGQHLLNSHDLERYIRDRGMP 439

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                  L        A                    +      + ++     L    T  
Sbjct: 440  FPTATALLKWAGQENA-------------------PDHRRAWAEWVIHFTNDLDRIST-- 478

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI-IETGSCIKA 600
                    +S      +   + +          LW E  G+   ++ + + +      + 
Sbjct: 479  ------RPLSAHLAHLIDTAEEISRGP-----ALWEEAAGRKARAVIADLQLNAPHGGEM 527

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
               ++  I+  ++ G  V+        L I GTLE+R+   D +IL GLNEG+WP  +A 
Sbjct: 528  EPRDFTAILDGVLRGAEVRNPDTGHPNLLIWGTLEARVQGADLVILAGLNEGIWPGASAA 587

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
            +P+L+R +++   L   E+ IG AAHD++ A     +  +R++R ++  T+A+RW+ RL 
Sbjct: 588  DPWLNRALRARAGLLLPERRIGLAAHDYQQAIAAPEVWLSRAIRSSDAETVAARWVNRLT 647

Query: 721  VLG-------GTDFFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSF 772
             L        G      ++ +G  +L     +     + P   RP P PPL A+P   S 
Sbjct: 648  NLLEGLPDQNGPAALAAMRAKGDAWLARASAMSQPDTRLPAAARPAPRPPLAARPTKLSV 707

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            + I+ L+ DPYA+YAR +L+L+ +    +  D   RGT+ H +  + I      +     
Sbjct: 708  TGIETLLRDPYAIYARHVLRLNALGPLNQSADARMRGTVIHKVYEDFINSGTAPDAAHAL 767

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
             L+ Q   +  +++   P     W     + +  FL+ E + Q+      +    ++A+ 
Sbjct: 768  ALLDQFAIAALDEDCPWPVTARQWLSQIRRAAPYFLQTEGERQAKGTPTLLEKRGEIALG 827

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
                 L G ADRIDL   G   I DYKTG  P  ++ Q+  D QL +EAA +  G+F QI
Sbjct: 828  RHDFTLVGKADRIDLQPDGQALIYDYKTGAPPSAKS-QRYFDKQLLIEAAMIARGAFQQI 886

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
              R VA   +I L  K        D      +    +    L +++       + + + +
Sbjct: 887  GPRDVAGAEFIGLGSKLATVPAPLD------ELPPAQIWAELQQLIDAWMQYPRGYTARI 940

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037
                +    S+YDHLAR  EW +  
Sbjct: 941  AP-FEMKYASDYDHLARYGEWGDSD 964


>gi|126732964|ref|ZP_01748725.1| hypothetical protein SSE37_17735 [Sagittula stellata E-37]
 gi|126706581|gb|EBA05657.1| hypothetical protein SSE37_17735 [Sagittula stellata E-37]
          Length = 978

 Score =  539 bits (1388), Expect = e-150,   Method: Composition-based stats.
 Identities = 279/1043 (26%), Positives = 438/1043 (41%), Gaps = 93/1043 (8%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            P VF + P   F   +I  L         R     P  +A V +YV T R  + LR+ F 
Sbjct: 12   PRVFALPPGVDFPAALIDGL-------RARLAGRPPEAIARVELYVATDRMRRRLRNLF- 63

Query: 66   EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125
                  +++LP I+ L D+      +D L    L  PVS ++R LEL  L+       PD
Sbjct: 64   --DAGPASLLPRIRLLTDL------SDPLTRAALPAPVSPLRRRLELTGLVSRLLETQPD 115

Query: 126  IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
            +                +    L+ +LA +++ +  E    + +  L        W  A 
Sbjct: 116  LAPR-------------SALFDLSDSLATLMEEMHVEGVSPKTVANLDVTDQSGHWQRAL 162

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
             F  I   Y+     +    +    ++AL         +  + P+IIAGSTGS   T  L
Sbjct: 163  TFFNIVQHYFD---KDATPDAQAFNRMALELRLEAWEAQPPRHPVIIAGSTGSRGTTHAL 219

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            M  VA  P GAIVLPG D  +P A+W+ + +  T+          HPQY  AKL+  L+I
Sbjct: 220  MKAVARLPQGAIVLPGFDTDMPPAVWSKLEDPLTS--------EDHPQYRFAKLMRELEI 271

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
               DV+           R+ VIS +  P   +    ++     +PN+     DV L+EA+
Sbjct: 272  TARDVRPWTYGQPPSAARNRVISLAMRPAPVTHQWLSE--GPNLPNLPDAMQDVTLLEAN 329

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            ++REEA++IA+ LR + +     +ALIT DR L R+V   L R+ I  D SAG P   T 
Sbjct: 330  SQREEALAIALRLREAAEN-GTTAALITPDRMLTRQVTSALDRWDILPDDSAGTPAQLTP 388

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
               +L  +            + +L+KHPL   G            LEL   +      D 
Sbjct: 389  PGRLLRLVAELFTAPLTAELLLSLLKHPLTHAGQDRGPHLLTTRELELHIRKTGLPYPDA 448

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              L +    R A                      A  L D                    
Sbjct: 449  ETLTAWATARDAD----------------RWGAWAATLCDR----------------QQT 476

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI-IETGSCIKANAIE 604
            G L ++DW +  ++  + +          LW E  G+ L +L   +  E        A +
Sbjct: 477  GTLPLADWIERHLSLAEALTAGPDGDPAPLWAENAGRKLRALTETLQFEAEHGTDMTARD 536

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            + D+   L+  E V+ +      + I GTLE+R++  D LIL GLNEG WP++ A +P+L
Sbjct: 537  YADLFGALVSREEVRDRDAPHPKILIWGTLEARVMGADLLILAGLNEGAWPESPAADPWL 596

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG- 723
            +R M++   L   E+ IG +AHDF+ A     +  TRSL+ +   T+ SRW+ RL  L  
Sbjct: 597  NRSMRAQAGLLLPERRIGLSAHDFQQAAAAPEIWLTRSLKSDEAETVPSRWINRLTNLLN 656

Query: 724  ------GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                  G    + +++RG  +       +   +    +RP P PP  ++P+    + I++
Sbjct: 657  GLPDRNGRKALEEMRERGAHWAALAAAAETPIEADPARRPSPAPPTISRPQELWVTSIRR 716

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L+ DPYA+YAR IL+L  +    + PD   RG + H +I   I++ +          + Q
Sbjct: 717  LVRDPYAIYARYILRLKALDPLMQAPDALMRGVVTHKVIETFIRETVADPDRLTPDRLMQ 776

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF--VNIPAKMAIESIG 895
            I       +   P +  +W     + +  F E E   +                +I ++G
Sbjct: 777  IAR-VLLDDVPFPTVRALWLARVARFAPWFCESEADRRQRAAPHLDNFETEGAASIPALG 835

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
              L   ADRID+       + DYKTG  P  +  Q   D QL LEAA L+  +F  I  R
Sbjct: 836  FTLKARADRIDIAPDAGAHVYDYKTGSAPSAKE-QLYFDKQLLLEAAMLQQSAFPNIAPR 894

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015
             VA   YI+LK          +     AD   +K+ +    ++    + ++ + +   L 
Sbjct: 895  YVAAATYIQLKPGD-----PKEVAAPLADSPPQKTWEEFCALIAAYLDEDKGYTARRALM 949

Query: 1016 EKSNIQSEYDHLARVAEWREEYD 1038
            + ++I  +YDHL+R  EW    D
Sbjct: 950  KDTDIA-DYDHLSRFGEWDVTDD 971


>gi|146278984|ref|YP_001169143.1| exonuclease-like protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145557225|gb|ABP71838.1| RecB family exonuclease-like protein [Rhodobacter sphaeroides ATCC
            17025]
          Length = 1000

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 269/1043 (25%), Positives = 429/1043 (41%), Gaps = 96/1043 (9%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            P +F + P   F   ++  L         R     P  +A V +YV T+R  + +     
Sbjct: 13   PRLFGLPPGVDFPAALVRGL-------RARMAGAPPEAMARVELYVNTQRMRRRVVELMT 65

Query: 66   EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125
                     LP I+ + ++              L  PV  ++R LELA+L+       PD
Sbjct: 66   AEGAG---FLPRIRLVTEL---------PPVPGLPAPVPPLRRRLELAQLVARLIEAQPD 113

Query: 126  IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
            I                +    L+ +LAD+ID ++ E    E +  L    +   W    
Sbjct: 114  IAPR-------------SALFDLSDSLADLIDEMQGEGVPPEAIARLDVADHSAHWQRTQ 160

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
             F+ I +  +     +    +    ++ + R  A         P+I+AGSTGS   TA  
Sbjct: 161  AFMAIVAPMFGADAPD----AQALARMTVERIAARWAEAPPDHPVIVAGSTGSRGTTALF 216

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            M  VA  P GA+VLPG D  +P  +W+ + +          T   HPQ+   +L+  +  
Sbjct: 217  MQAVARLPQGALVLPGFDFDLPAEVWDGLGDAL--------TAEDHPQFRFHRLMGLVGA 268

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                V R  +       R+ +IS S  P   +D   T+     + ++      +ALIEA 
Sbjct: 269  APSQVHRWTDEDPPSPARNRLISLSLRPAPVTDQWLTEGQR--LTDLALAAEGMALIEAA 326

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
              R EA+++AI LR + ++  +++ALIT+DR L R+V   L R+GI  D SAG PL+ + 
Sbjct: 327  GPRAEALAVAIILRKAAED-GRRAALITSDRGLTRQVAAALDRWGIVPDDSAGRPLALSA 385

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                L  +     +     A+ TL+KHPL   G       R    LEL   R        
Sbjct: 386  PGRFLRHVARLFGQRLTGEALLTLLKHPLTATGSDRGNHLRWTRDLELHLRRKGPPFPTG 445

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
             DL                             +        +   I  L           
Sbjct: 446  GDLDLWA--------------------GARPDDGVADWARWLGGLIEGLDAV-------- 477

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRK-LPNLWFEEEGKTLSSLFSKII-ETGSCIKANAI 603
            GN  +SD     +   + +           LW +E G+   +   ++  E     +    
Sbjct: 478  GNRPLSDHVAAHLALAEALAAGPAGTGTGELWLKEAGEAARAAVEELRREAPHGGELTTA 537

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
            ++ D+   ++    V+  ++    L I GTLE+R+   D +ILGGLN+G WP+    +P+
Sbjct: 538  DYTDLFDAILARGEVREAVQAHPGLMIWGTLEARVQGADLVILGGLNDGTWPQLPPPDPW 597

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL- 722
            L+R M+    L   E+ IG +AHD+  A     ++ TR+ R     T+ SRWL RL+ L 
Sbjct: 598  LNRQMRLRAGLLLPERRIGLSAHDYSQAVAAPEVVLTRATRNAEAETVPSRWLNRLMNLM 657

Query: 723  ------GGTDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRTYSFSEI 775
                  GG +  + ++ RG+ +L     L+      P   RP P PP+ A+P   + + I
Sbjct: 658  SGLKAQGGPEALEAMRARGRGWLALASALEQPEAPVPLAARPAPQPPVSARPDRLAVTGI 717

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN-HL 834
            + LI DPYA+YAR IL+L  +    + PD   RG++ H I+ E +K R            
Sbjct: 718  RTLIRDPYAIYARHILRLYPLDPLHRAPDARLRGSILHRILEEFVKDRAPGTDRAAERAR 777

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
            + +I ++    E   P    +W     + +  FLE E         + +    ++ +  +
Sbjct: 778  LMRIAETVLTDEVPWPAARALWLARLDRAADFFLETEAAH--GGTPVVLEEEGRVDLAPL 835

Query: 895  GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
               LT   DRID L  G + I DYKTG  P ++  ++  D QL LEAA  + G F ++  
Sbjct: 836  RFTLTAKPDRIDRLPDGRLHILDYKTGTPPTRKQQEQ-FDKQLLLEAAMAEHGGFRKLGP 894

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014
              VA + YI L    K++ +  D        L  +  + L  +V      EQ ++S  R 
Sbjct: 895  TDVARISYIGLGSSPKVESVETDAA------LLGQVWEGLHALVGRYLRREQGYVSR-RA 947

Query: 1015 SEKSNIQSEYDHLARVAEWREEY 1037
                    +YDHLAR  EW    
Sbjct: 948  MFGERFPGDYDHLARFGEWEMSD 970


>gi|254563797|ref|YP_003070892.1| hypothetical protein METDI5474 [Methylobacterium extorquens DM4]
 gi|254271075|emb|CAX27082.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 1047

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 305/1055 (28%), Positives = 481/1055 (45%), Gaps = 34/1055 (3%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             +  P VFTI P +PF   +  AL++G LV        +P  LASVT+Y+PT+RA++ L 
Sbjct: 3    ASAAPRVFTIPPGAPFLPTLADALVSGRLV---GAVGGDPFALASVTLYLPTQRAVRALS 59

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN-----PPVSNIQRLLELARLI 116
            +   +  G  + +LP +  LG+  E +                 P +  ++R L LARL+
Sbjct: 60   TVLAQRLGG-AALLPRMIPLGEADEAELDLSSNTLLETPEDLLYPSIPALERRLILARLV 118

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
              W   +   +  +  E P  +P SPA+A+ LA +L  ++D +  E   W ++ A    +
Sbjct: 119  QKWAETVDRELLPIDDEVPFLVPSSPADAVALAADLEGLMDALTVEGLPWSEIAAAVEAE 178

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGS 235
            +  ++ L  DFLKIA+++W + L   + + P      L+ AEA+ L +   G P+I+AGS
Sbjct: 179  HSRYFRLTLDFLKIAAEHWPDILAARSLADPTARARRLVLAEADRLFRERPGDPVIVAGS 238

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
            TGS+PATARL++ VA  P GA+VLPGLD H+    W  I          +     HPQ  
Sbjct: 239  TGSVPATARLIAAVARLPRGAVVLPGLDLHLDAEGWEAIDGAGG---KHDEIAHGHPQAI 295

Query: 296  LAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            L  L       ++R DV+ LG++S E   R  ++S++  P +T+D         ++   +
Sbjct: 296  LRALTGPRGFAVERRDVETLGDLSPEAVAREKLLSQALRPAETTDAWAGLDAAERMTLAR 355

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
            +  + +A++EA +EREEA+  A+ALR +L+     +AL+T DR LA RV  EL R+GI  
Sbjct: 356  EGMAGLAVVEAADEREEALVAALALRETLETPGATAALVTPDRGLALRVSAELARWGIAA 415

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            + SAG+ L+ +        +     +      +  L+ HP  + G     + RA  ALE+
Sbjct: 416  EDSAGLSLARSQAGRFARLVAELAAE-VAPARVIALLAHPFVRLGLTRSEVVRAAAALEI 474

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
              LRG            +       +     VP  + RL   D +LA  ++D +   +  
Sbjct: 475  GGLRGPAPIPK-NSFDGMRAAVALQRNATERVPRAKKRLKPVDWDLAEDILDRLEIALDA 533

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
              T    +       ++           + +         +   +    TL  LF  +  
Sbjct: 534  FRTDLQPEIG-----NLVALAAGHREACERMMGGAEEGDADETDDPSLDTLDGLFDDLES 588

Query: 594  TG-SCIKANAIEWIDIITRLIDGETVKP-KIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                 +     ++    T L    TV   +      L ILG LE+RLL+ D ++LGGL+E
Sbjct: 589  AEQEELPGRFSDYAAFFTALARDRTVACAQRSAHPRLRILGPLEARLLSVDRIVLGGLDE 648

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
             VWP     + FLSR M+ D+ L   E+ IGQAAHDF    GT   + TR+ +    PT+
Sbjct: 649  TVWPVRQTTDAFLSRPMRGDVGLSPPERRIGQAAHDFVQGLGTHDAVVTRAAKREGSPTV 708

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH--YKRPKPFPPLEAQPRT 769
             SR+LQRL   GG   + +   RGQ       +LD   + P    KRP P P     P  
Sbjct: 709  PSRFLQRLRAFGGDAVWADAIARGQRLRGLAARLDRGQEAPPPRLKRPAPKPDPALFPER 768

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S +EI+ L+ DPY++YAR IL L+ +      P   +RG+L H ++ +  +        
Sbjct: 769  LSVTEIETLVRDPYSIYARHILGLEALEPIAVVPGAAERGSLIHKVLGDFSQAHPGALPA 828

Query: 830  EINHLMKQIIDSHFEKE-NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
            +   L+  I    F    +  P +   W   + +++ +FLE E   +  +  I      K
Sbjct: 829  DAETLLYAIAFDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEASQRQGLHTIHAERSGK 888

Query: 889  MAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            + I        L+  ADRI++   G   I D+KTG  P   T      PQL+LEAA L  
Sbjct: 889  VTIPLGERTFTLSARADRIEVRADGSYCIVDFKTGTPPSNRTVFAGFSPQLTLEAAMLMH 948

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKI----DCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
            G+F  +      +L YI      +               + + + E+  + L  ++    
Sbjct: 949  GAFEGLKAAAPPDLLYIYASGGREPFRPIPVKPPPGDARAVEAVVEEHWQRLRGLIARYM 1008

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             GE  ++S     +     +EYDHLARV EW    
Sbjct: 1009 TGEAAYLSRP-YPQYERAYNEYDHLARVLEWSLAG 1042


>gi|218532780|ref|YP_002423596.1| double-strand break repair protein AddB [Methylobacterium
            chloromethanicum CM4]
 gi|218525083|gb|ACK85668.1| double-strand break repair protein AddB [Methylobacterium
            chloromethanicum CM4]
          Length = 1047

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 303/1055 (28%), Positives = 480/1055 (45%), Gaps = 34/1055 (3%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             +  P VFTI P +PF   +  AL++G LV        +P  LASVT+Y+PT+RA++ L 
Sbjct: 3    ASAAPRVFTIPPGAPFLPTLADALVSGRLV---GAVGGDPFALASVTLYLPTQRAVRALS 59

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN-----PPVSNIQRLLELARLI 116
            +   +  G  + +LP +  LG+  E +                 P +  ++R L LARL+
Sbjct: 60   TVLAQRLGG-AALLPRMIPLGEADEAELDLSSNTLLETPEDLLYPSIPALERRLILARLV 118

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
              W   +   +  +  E P  +P SPA+A+ LA +L  ++D +  E   W ++ A    +
Sbjct: 119  QKWAETVDRELLPIDDEVPFLVPSSPADAVALAADLEGLMDALTVEGLPWSEIAAAVEAE 178

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGS 235
            +  ++ L  DFLKIA+++W + L   + + P      L+ AEA+ L +   G P+I+AGS
Sbjct: 179  HSRYFRLTLDFLKIAAEHWPDILAARSLADPTARARRLVLAEADRLFRERPGDPVIVAGS 238

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
            TGS+PATARL++ VA  P GA+VLPGLD H+    W  I          +     HPQ  
Sbjct: 239  TGSVPATARLIAAVARLPRGAVVLPGLDLHLDAEGWEAIDGAGG---KHDEIAHGHPQAI 295

Query: 296  LAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            L  L       ++R DV+ LG++S E   R  ++S++  P +T+D         ++   +
Sbjct: 296  LRALTGPRGFAVERRDVETLGDLSPEAVAREKLLSQALRPAETTDAWAGLDAAERMTLAR 355

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
            +  + +A++EA +EREEA+  A+ALR +L+     +AL+T DR LA RV  EL R+GI  
Sbjct: 356  EGMAGLAVVEAADEREEALVAALALRETLETPGATAALVTPDRGLALRVSAELARWGIAA 415

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            + SAG+ L+ +        +     +      +  L+ HP  + G     + RA  ALE+
Sbjct: 416  EDSAGLSLARSQAGRFARLVAELAAE-VAPARVIALLAHPFVRLGLTRSEVVRAAAALEI 474

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
              LRG            +       +     VP  + RL   D +LA  ++D +   +  
Sbjct: 475  GGLRGPAPIPK-NSFDGMRAAVALQRNATERVPRAKKRLKPVDWDLAEDILDRLEIALDA 533

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
              T    +       ++           + +         +   +    TL  LF  +  
Sbjct: 534  FRTDLQPEIG-----NLVALAAGHREACERMMGGAEESDADEADDPSLDTLDGLFDDLES 588

Query: 594  TG-SCIKANAIEWIDIITRLIDGETVKP-KIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                 +     ++    T L    TV   +      L ILG LE+RLL+ D ++LGGL+E
Sbjct: 589  AEQEELPGRFSDYAAFFTALARDRTVACAQRSAHPRLRILGPLEARLLSVDRIVLGGLDE 648

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
             VWP     + FL+R M+ D+ L   E+ IGQAAHDF    GT   + TR+ +    PT+
Sbjct: 649  TVWPVRQTTDAFLNRPMRGDVGLSPPERRIGQAAHDFVQGLGTHDAVVTRAAKREGSPTV 708

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH--YKRPKPFPPLEAQPRT 769
             SR+LQRL   GG   + +   RGQ       +LD   + P    KRP P P     P  
Sbjct: 709  PSRFLQRLRAFGGDAVWADAIARGQRLRGLAARLDRGQEAPPPRLKRPAPKPDPALFPER 768

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S +EI+ L+ DPY++YAR IL L+ +      P   +RG+L H ++ +  +        
Sbjct: 769  LSVTEIETLVRDPYSIYARHILGLEALEPIAVVPGAAERGSLIHKVLGDFSQAHPGALPA 828

Query: 830  EINHLMKQIIDSHFEKE-NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
            +   L+  I    F    +  P +   W   + +++ +FLE E   +  +  I      K
Sbjct: 829  DAETLLYAIAFDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEASQRQGLHTIHAERSGK 888

Query: 889  MAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            + I        L+  ADRI+    G   I D+KTG  P   T      PQL+LEAA L  
Sbjct: 889  VTIPLGERTFTLSARADRIEARADGSYCIVDFKTGTPPSNRTVFAGFSPQLTLEAAMLMH 948

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKI----DCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
            G+F  +      +L Y+      +               + + + E+  + L  ++    
Sbjct: 949  GAFEGLKAASPPDLLYVYASGGREPFRPIPVKPPPGDARAVEAVVEEHWQRLRGLIARYM 1008

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             GE  ++S     +     +EYDHLARV EW    
Sbjct: 1009 TGEAAYLSRP-YPQYERAYNEYDHLARVLEWSLAG 1042


>gi|163853835|ref|YP_001641878.1| double-strand break repair protein AddB [Methylobacterium extorquens
            PA1]
 gi|163665440|gb|ABY32807.1| double-strand break repair protein AddB [Methylobacterium extorquens
            PA1]
          Length = 1047

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 303/1055 (28%), Positives = 481/1055 (45%), Gaps = 34/1055 (3%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             +  P VFTI P +PF   +  AL++G LV        +P  LASVT+Y+PT+RA++ L 
Sbjct: 3    ASAAPRVFTIPPGAPFLPTLADALVSGRLV---GAVGGDPFALASVTLYLPTQRAVRALS 59

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN-----PPVSNIQRLLELARLI 116
            +   +  G  + +LP +  LG+  E +                 P +  ++R L LARL+
Sbjct: 60   TVLAQRLGG-AALLPRMIPLGEADEAELDLSSNTLLETPEDLLYPSIPALERRLILARLV 118

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
              W   +   +  +  E P  +P SPA+A+ LA +L  ++D +  E   W ++ A    +
Sbjct: 119  QKWAETVDRELLPIDDEVPFLVPSSPADAVALAADLEGLMDALTVEGLPWSEIAAAVEAE 178

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGS 235
            +  ++ L  DFLKIA+++W + L   + + P      L+ AEA+ L +   G P+I+AGS
Sbjct: 179  HSRYFRLTLDFLKIAAEHWPDILAARSLADPTARARRLVLAEADRLFRERPGDPVIVAGS 238

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
            TGS+PATARL++ VA  P GA+VLPGLD H+    W+ I          +     HPQ  
Sbjct: 239  TGSVPATARLIAAVARLPRGAVVLPGLDLHLDAEGWDAIDGAGG---KHDEIAHGHPQAI 295

Query: 296  LAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            L  L       ++R DV+ LG++S E   R  ++S++  P +T+D         ++   +
Sbjct: 296  LRALTGPRGFAVERRDVETLGDLSPEAVAREKLLSQALRPAETTDAWAGLDAAERMTLAR 355

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
            +  + +A++EA +EREEA+  A+ALR +L+     +AL+T DR LA RV  EL R+GI  
Sbjct: 356  EGMAGLAVVEAADEREEALVAALALRETLETPGATAALVTPDRGLALRVSAELARWGIAA 415

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            + SAG+ L+ +        +     +      +  L+ HP  + G     + RA  ALE+
Sbjct: 416  EDSAGLSLARSQAGRFARLVAELAAE-VAPARVIALLAHPFVRLGLTRSEVVRAAAALEI 474

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
              LRG            +       +     VP  + RL   D +LA  ++D +   +  
Sbjct: 475  GGLRGPAPIPK-NSFDGMRAAVALQRNATERVPRAKKRLKPVDWDLAEDILDRLEIALDA 533

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
              T    +       ++           + +         +   +    TL  LF  +  
Sbjct: 534  FRTDLQPEIG-----NLVALAAGHREACERMMGGAEEGDADESDDPSLDTLDGLFDDLES 588

Query: 594  TG-SCIKANAIEWIDIITRLIDGETVKP-KIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                 +     ++    T L    TV   +      L ILG LE+RLL+ D ++LGGL+E
Sbjct: 589  AEQEELPGRFSDYAAFFTALARDRTVACAQRSAHPRLRILGPLEARLLSVDRIVLGGLDE 648

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
             VWP     + FL+R M+ D+ L   E+ IGQAAHDF    GT   + TR+ +    PT+
Sbjct: 649  TVWPVRQTTDAFLNRPMRGDVGLSPPERRIGQAAHDFVQGLGTHDAVVTRAAKREGSPTV 708

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY--TTKQPHYKRPKPFPPLEAQPRT 769
             SR+LQRL   GG   + +   RGQ       +LD       P  KRP P P     P  
Sbjct: 709  PSRFLQRLRAFGGDAVWADAIARGQRLRGLAARLDRGQAAPPPRLKRPAPKPDPALFPER 768

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S +EI+ L+ DPY++YAR IL L+ +      P   +RG+L H ++ +  +        
Sbjct: 769  LSVTEIETLVRDPYSIYARHILGLEALEPIAVVPGAAERGSLIHKVLGDFSQAHPGALPA 828

Query: 830  EINHLMKQIIDSHFEKE-NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
            +   L+  I    F    +  P +   W   + +++ +FLE E + +  +  I      K
Sbjct: 829  DAETLLYAIAFDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEARQRQGLHTIHAERSGK 888

Query: 889  MAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            + I        L+  ADRI+    G   I D+KTG  P   T      PQL+LEAA L  
Sbjct: 889  VTIPLGERTFTLSARADRIEARADGSYCIVDFKTGTPPSNRTVFAGFSPQLTLEAAMLMH 948

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKI----DCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
            G+F  +      +L Y+      +               + + + E+  + L  ++    
Sbjct: 949  GAFEGLKAASPPDLLYVYASGGREPFRPIPVKPPPGDARAVEAVVEEHWQRLRGLIARYM 1008

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             GE  ++S     +     +EYDHLARV EW    
Sbjct: 1009 TGEAAYLSRP-YPQYERAYNEYDHLARVLEWSLAG 1042


>gi|240141288|ref|YP_002965768.1| hypothetical protein MexAM1_META1p4882 [Methylobacterium extorquens
            AM1]
 gi|240011265|gb|ACS42491.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 1047

 Score =  534 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 303/1055 (28%), Positives = 480/1055 (45%), Gaps = 34/1055 (3%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             +  P VFTI P +PF   +  AL++G LV        +P  LASVT+Y+PT+RA++ L 
Sbjct: 3    ASAAPRVFTIPPGAPFLPTLADALVSGRLV---GAVGGDPFALASVTLYLPTQRAVRALS 59

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN-----PPVSNIQRLLELARLI 116
            +   +  G  + +LP +  LG+  E +                 P +  ++R L LARL+
Sbjct: 60   TVLAQRLGG-AALLPRMIPLGEADEAELDLSSNTLLETPEDLLYPSIPALERRLILARLV 118

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
              W   +   +  +  E P  +P SPA+A+ LA +L  ++D +  E   W ++ A    +
Sbjct: 119  QKWAETVDRELLPIDDEVPFLVPSSPADAVALAADLEGLMDALTVEGLPWSEIAAAVEAE 178

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGS 235
            +  ++ L  DFLKIA+++W + L   + + P      L+ AEA+ L +   G P+I+AGS
Sbjct: 179  HSRYFRLTLDFLKIAAEHWPDILAARSLADPTARARRLVLAEADRLFRERPGDPVIVAGS 238

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
            TGS+PATARL++ VA  P GA+VLPGLD H+    W  I          +     HPQ  
Sbjct: 239  TGSVPATARLIAAVARLPRGAVVLPGLDLHLDAEGWEAIDGAGG---KHDEIAHGHPQAI 295

Query: 296  LAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            L  L       ++R DV+ LG++S E   R  ++S++  P +T+D         ++   +
Sbjct: 296  LRALTGPRGFAVERRDVETLGDLSPEAVAREKLLSQALRPAETTDAWAGLDAAERMTLAR 355

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
            +  + +A++EA +EREEA+  A+ALR +L+     +AL+T DR LA RV  EL R+GI  
Sbjct: 356  EGMAGLAVVEAADEREEALVAALALRETLETPGATAALVTPDRGLALRVSAELARWGIAA 415

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            + SAG+ L+ +        +     +      +  L+ HP  + G     + RA  ALE+
Sbjct: 416  EDSAGLSLARSQAGRFARLVAELAAE-VAPARVIALLAHPFVRLGLTRSEVVRAAAALEI 474

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
              LRG            +       +     VP  + RL   D +LA  ++D +   +  
Sbjct: 475  GGLRGPAPIPK-NSFDGMRAAVALQRNATERVPRAKKRLKPVDWDLAEDILDRLEIALDA 533

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
              T    +       ++           + +  +      +   +    TL  LF  +  
Sbjct: 534  FRTDLQPEIG-----NLVALAAGHREACERMMGEADEGDADETDDPSLDTLDGLFDDLES 588

Query: 594  TG-SCIKANAIEWIDIITRLIDGETVKP-KIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                 +     ++    T L    TV   +      L ILG LE+RLL+ D ++LGGL+E
Sbjct: 589  AEQEELPGRFSDYAAFFTALSRDRTVACAQRSAHPRLRILGPLEARLLSVDRIVLGGLDE 648

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
             VWP     + FL+R M+ D+ L   E+ IGQAAHDF    GT   + TR+ +    PT+
Sbjct: 649  TVWPVRQTTDAFLNRPMRGDVGLSPPERRIGQAAHDFVQGLGTHDAVVTRAAKREGSPTV 708

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH--YKRPKPFPPLEAQPRT 769
             SR+LQRL   GG   + +   RGQ       +LD   + P    KRP P P     P  
Sbjct: 709  PSRFLQRLRAFGGDAVWADAIARGQRLRGLAARLDRGQEAPPPRLKRPAPKPDPALFPER 768

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S +EI+ L+ DPY++YAR IL L+ +      P   +RG+L H ++ +           
Sbjct: 769  LSVTEIETLVRDPYSIYARHILGLEALEPIAVVPGAAERGSLIHKVLGDFSAAHPGALPA 828

Query: 830  EINHLMKQIIDSHFEKE-NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
            +   L+  I    F    +  P +   W   + +++ +FLE E   +  +  I      K
Sbjct: 829  DAETLLYAIAFDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEASQRQGLHTIHAERSGK 888

Query: 889  MAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            + I        L+  ADRI+    G   I D+KTG  P   T      PQL+LEAA L  
Sbjct: 889  VTIPLGERTFTLSARADRIEARADGSYCIVDFKTGTPPSNRTVFAGFSPQLTLEAAMLMH 948

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKI----DCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
            G+F  +      +L Y+      +               + + + E+  + L  ++    
Sbjct: 949  GAFEGLKAASPPDLLYVYASGGREPFRPIPVKPPPGDARAVEAVVEEHWQRLRGLIARYM 1008

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             GE  ++S     +     +EYDHLARV EW    
Sbjct: 1009 TGEAAYLSRP-YPQYERAYNEYDHLARVLEWSLAG 1042


>gi|90420585|ref|ZP_01228492.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90335313|gb|EAS49066.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 1043

 Score =  532 bits (1371), Expect = e-148,   Method: Composition-based stats.
 Identities = 354/1043 (33%), Positives = 529/1043 (50%), Gaps = 29/1043 (2%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
              N+F+I P  PF   +   LL+G +V +FRY   +PL LA  TIYVPT+RA + L  EF
Sbjct: 2    TANLFSIPPGRPFLATLAEGLLDGRIVPSFRYTG-DPLALAGATIYVPTRRAARALAGEF 60

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
              + G  S ILP I+ +G+  E    A      +L P +  ++R L+LARL   WR+   
Sbjct: 61   ARLLGTGSAILPAIRPIGESDEASQFAPEGERPSLEPSMGELERRLQLARLARQWRSVTR 120

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184
                +        LP S A+A+WLA +L  ++D +ETE      L  L  +    WW L 
Sbjct: 121  GREFEALIGEEAVLPASAADALWLAADLGALLDEVETEGTSLGKLAGLAPDALSDWWQLT 180

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATA 243
              FL I ++ W + L E    S    +   +RAEA+ L +    GP+I+AGST + PAT 
Sbjct: 181  VTFLSIVTETWPQALAEAGRVSEATAKNVWLRAEAQRLRRDPGIGPVILAGSTATAPATI 240

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             LM  +A+  +GA+VLPGLD H+    +  I+ +         +   HPQY L  +L   
Sbjct: 241  ELMHAIAHLEHGALVLPGLDRHLDPEAFAAISREGA------ISAPGHPQYGLKTILARF 294

Query: 304  DIKREDVKRL-GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
             +  E V  L  N    +  R   ++ +  P +T+        ++      +    +AL+
Sbjct: 295  ALPPEAVTHLAPNEEPALTAREAFVADALRPAETTHRWRETARDH----GAEALDGLALV 350

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            EA++EREEA++IA A+R +L +    +ALIT DRNLARRV  EL RFGI  + S G PL+
Sbjct: 351  EANDEREEALAIACAMRAALADPDATTALITPDRNLARRVVSELARFGIAANDSGGRPLA 410

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             T   ++LT+L     +  D +A+  L+KHPL + G P     RA  A+E++ALRG+   
Sbjct: 411  ATPPGTLLTTLAAVALQPGDPIALIALLKHPLTRLGMPAAEARRAARAIEMLALRGSVGI 470

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
             D   L ++V  R    +  TH+P     L E ++ELA ++ D +   + PL   +    
Sbjct: 471  PDGARLGAIVAARRRMLETATHMPRPVRILPEAERELAQIMADRLEAALEPLSALRD--- 527

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS-CIKAN 601
                   I+ +      CL+ V  D       ++ EE G+ +    S I+          
Sbjct: 528  --GTEREIAAYATALTRCLEAVAADADEDASEVYAEEAGRAMVEFLSDIVRAPDTGFGFA 585

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
            + E  D+I  LI G TVKP+   S+  F+ GTLE+RL + D  ILGGLNEG WP  T   
Sbjct: 586  SRELGDVIDALIAGVTVKPRGGLSARAFVWGTLEARLQSVDMAILGGLNEGTWPGGTKSG 645

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
             FLSR+M+ ++ L   E+ IG AAHDF MA G R ++ TRS R    P IASRWLQRL  
Sbjct: 646  AFLSRLMRREIALDPPERRIGLAAHDFWMAMGARKVVITRSRRAGGAPAIASRWLQRLTT 705

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP----HYKRPKPFPPLEAQPRTYSFSEIKQ 777
            L G D    L+  GQ YLD  R+LD             RP+P PPL+ +P +YS ++++ 
Sbjct: 706  LAGEDGTARLRAAGQTYLDHARRLDDAPADAGQDIRAARPEPRPPLDRRPTSYSITDVET 765

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            LI DPYA++AR+I+ L+ +P   +DP   +RG LFH+I+   +++  + +  +    +  
Sbjct: 766  LIRDPYAIHARKIMNLEPLPELMRDPHAAERGNLFHDILGRFVQRGHDPDAGDAEAEILA 825

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
            I    F++E LPP I+ +W      +  +F+  E +    +      I        +   
Sbjct: 826  IARERFDEEMLPPDIEAVWWPRAESLCANFIAWERERGPRVATRHAEIGGAYDFTDLATT 885

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID-CRK 956
            L G ADR+D++  G  +I D+KTG  P    A+ L+ PQL LE A  K G+F+       
Sbjct: 886  LRGRADRVDVMADGSTEILDFKTGTTPSVSQARALLAPQLPLEGAMAKLGAFADAGTASA 945

Query: 957  VANLFYIRLKQKFKIDCIT-----NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
            +++L Y+RL+++   +           +    D LS+++L     +V   +N   PF S 
Sbjct: 946  ISDLVYVRLRERTLYEDHLASDGGRKGEPVDPDALSDEALAKFRGLVANFRNAATPFRSR 1005

Query: 1012 LRLSEKSNIQSEYDHLARVAEWR 1034
             R     +    YDHLAR  EW 
Sbjct: 1006 TRPFIAGDFSGAYDHLARAQEWS 1028


>gi|23015052|ref|ZP_00054841.1| COG3893: Inactivated superfamily I helicase [Magnetospirillum
            magnetotacticum MS-1]
          Length = 975

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 288/1043 (27%), Positives = 449/1043 (43%), Gaps = 76/1043 (7%)

Query: 1    MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
            M +  P VFTI P + F   +   LL             +PL LA + I +PT+RA + +
Sbjct: 1    MASMSP-VFTIVPGAAFVDTLAAHLLAE--------AEGDPLALADMEILLPTRRACRAM 51

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
               F+ ++G +  +LP ++ LGD+ EE+         ++ P V+  +R+L LARLIL   
Sbjct: 52   SDAFLRLSGGRPLLLPRLRPLGDMDEEELDLAGADPLDIAPAVTPTERVLILARLILTAA 111

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
                  +             SP  A+ LA  LA ++D ++ E   + DL  L  E+Y   
Sbjct: 112  QAQGGHVP------------SPDQAVRLASELAKLLDAVQVERLDFADLAKLVPEEYAEH 159

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSI 239
            W +   FL I ++ W   L E     P      +M A+ E    +  +  II AGSTGS 
Sbjct: 160  WQVTLKFLAILTEAWPGILAERGVLDPEDRLNRVMAAQIEAWRARPPRHKIIAAGSTGSR 219

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L++ VA  P+G +VL GLD  +    W  +                HPQY L  L
Sbjct: 220  PATADLLAAVAGLPSGRVVLAGLDKAMDEESWAVLDPA-------------HPQYGLKAL 266

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            LD L ++R  V+ L N  +    R  +++++  P  T +        +      +    V
Sbjct: 267  LDRLGVERHRVRPLTNDVDLRQDRVRLLAEALRPAATCEAW-----RDLPTLDPRVLDGV 321

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
              ++A   REEA +IA+ +R  LD     +AL+T DR LARRV  EL R+GI ID SAG 
Sbjct: 322  WRLDAPTPREEAGAIALMMRRELDRTGHTAALVTPDRGLARRVAGELERWGIRIDDSAGR 381

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
             L  +   + L  +   + +     A+   +KHPLA  G            LE +ALRG 
Sbjct: 382  SLGLSEPGAFLRLVAEMVAEDFAPHAVLACLKHPLAAGGLETGAFRALVRRLERLALRGP 441

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
            + +  +  L+                                  +  +     P      
Sbjct: 442  RPAPGVAGLRQ-----------------------GVKDSRLAGWLADLETMAAPWPIGLK 478

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK-LPNLWFEEEGKTLSSLFSKIIETGSCI 598
             +  T     ++D  +  +   + +  D+       LW  E G+T +   + +      +
Sbjct: 479  AEEGT-----LADLLRAHMEFAEWLATDDQLPGPARLWRGEAGETAARFAADLAAAAPAL 533

Query: 599  K-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                   +  +   L+ G  V+   +    LFI G LE+RL + D LILGGLNEG WP  
Sbjct: 534  GVMAGRCYPALFDELMAGVAVRSAWDHHPRLFIWGPLEARLQHADLLILGGLNEGTWPAP 593

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
               +P++SR MQ+   L   E+ IG AAHDF        ++ TRS R +  PT+ SRWL 
Sbjct: 594  PEADPWMSRPMQAAFGLAPPERRIGLAAHDFAQGFAAPRVVLTRSSRVDGTPTVPSRWLM 653

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL  +         +   Q +L+W   LD   +    + P P PP+ A+PR  S +EI+ 
Sbjct: 654  RLDAVMKGSGLAFDQDAAQ-WLEWHALLDRPDRWKRPEIPAPAPPVSARPRRLSVTEIET 712

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
             + DPYA+YA+ +L+L  +     DP   + G++ H  +   +K        +    + +
Sbjct: 713  WMRDPYAIYAKHVLRLKALKPIDADPGAAEYGSMVHEALELFLKAWPAHLPSDPQGELLR 772

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--ESIG 895
            I    FE +   P +   W   F  ++      E   + ++ ++       + I   +  
Sbjct: 773  IGREVFEAKVTSPALWAFWWPRFESVARWVAAKEMGRRHAVRRVHAEAGGALEIEAPAGP 832

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
              LT  ADRID  + G + + DYKTG  PK         PQL LEA   + G F  +   
Sbjct: 833  FTLTAKADRIDEGQDGTLALIDYKTGTPPKAREVAAGFAPQLPLEAVIARHGGFGGVKAA 892

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015
             V+ L Y  LK           +    A  L+ ++L+ L  +V++  +   P+ +     
Sbjct: 893  PVSELLYWHLKGGADGG--FEREAGGDATTLAAEALEGLHALVSVFDDPATPYAARPHP- 949

Query: 1016 EKSNIQSEYDHLARVAEWREEYD 1038
            E +   S+Y HLARV EW    D
Sbjct: 950  EHAPKYSDYLHLARVREWASGGD 972


>gi|83950793|ref|ZP_00959526.1| hypothetical protein ISM_06825 [Roseovarius nubinhibens ISM]
 gi|83838692|gb|EAP77988.1| hypothetical protein ISM_06825 [Roseovarius nubinhibens ISM]
          Length = 985

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 262/1045 (25%), Positives = 423/1045 (40%), Gaps = 82/1045 (7%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P +F + P   +  E++  L         R +   P  +A VT+ V T++  + LR
Sbjct: 4    PQDSPRLFGLPPGVDYSAELLAGL-------RTRLETQPPEAMARVTLIVNTRKMAKRLR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
                        ILP I +L  +        +     L   +  ++R LELARLI    +
Sbjct: 57   QL---CDSGPDMILPRICTLASL------ESVWPLPGLPDAMPPLRRKLELARLISALID 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            + PD+                +    LA +LA ++D +  E    + + AL        W
Sbjct: 108  RAPDLAPR-------------SALFDLADSLAGLMDEMHGEGVDMDAIDALDIADQSGHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                 FL I ++ + +R     A      ++      A       +GP+I+AGSTGS   
Sbjct: 155  ARLKSFLAI-TRDFDDRDDCPGA--EARNRLVTEALLARWQAAPPQGPVILAGSTGSRGT 211

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T  LM  VA  P GA+VLPG D  +  + WN + ++             HPQY    LLD
Sbjct: 212  TQMLMQAVAALPQGAVVLPGFDYDMSDSAWNALEDRLGG--------EDHPQYRFRALLD 263

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L +    + R    +     R+ V+S +  P   +D   ++     +  I +    V L
Sbjct: 264  QLGLAPTALPRWTETAPACPPRNAVLSMALRPAPVTDQWRSE--GPLLTGIPEAMQGVTL 321

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA + R EA++IA+ LR + +     +ALIT DR+L R+V   L R+ I  D SAG PL
Sbjct: 322  LEAPSRRTEALAIAMRLREAAE-AGTPAALITPDRDLTRQVTAALDRWRILPDDSAGTPL 380

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              T     L  +   + +      + TL+KHPL   G       R    LEL   R    
Sbjct: 381  HRTAQGRFLRHVAALMTERLSTELLLTLLKHPLTHAGADRGAHLRLARELELHLRRKGLP 440

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              D   + +                           E      D +      L       
Sbjct: 441  FPDHEAITTWCA---------------------AKPEERQSWCDWLGDTF--LAGDLPGS 477

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG-SCIKA 600
            +      +        +        D      +      G    ++  ++   G     A
Sbjct: 478  HPLPALAAHHSALARRIAWGSTPGADWPPSWSDPLLTPAGPQSLAVLDELALHGPHGGPA 537

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            +A+++ +++  L+    V+        + I GT+E+R+   + +IL GLNEG WP+    
Sbjct: 538  SAVDFGNLLQNLLSSGEVRSAERADPLIRIWGTIEARVQGAELIILAGLNEGSWPETPGH 597

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
            +P+L+R ++    L   E+ IG AAHDF+ A     +  TR++R +   T+ SRWL RL 
Sbjct: 598  DPWLNRALRKQAGLLLPERRIGLAAHDFQQAALGPEIWITRAVRNDEAETVVSRWLNRLQ 657

Query: 721  VL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
             L       GG    D ++ RG+ +LD   +L+  T      RP P PP  A+P   S +
Sbjct: 658  NLLSGLPDQGGVAALDGMRARGKAWLDRVDQLEAVTPTAPEPRPAPCPPRAARPSRLSVT 717

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
             IK+LI DPYA+YAR +L L  +   ++ PD   RG   H+++   I +  + ++     
Sbjct: 718  AIKRLIRDPYAIYARHVLGLSALNPVQRVPDALMRGNALHDVLERFITETRDDDSGVTVA 777

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
             + +I D     +       + WR    +++  F+  E   ++      + I  +  + +
Sbjct: 778  RLMRIADEELAAQVPWAQTRMQWRARLERVADGFVADELARRTVARPAALEIATRGTLPA 837

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            +G  LT  ADR+D+   G V I DYKTG  P  +  Q+  D QL LEAA  +   +    
Sbjct: 838  LGFTLTAKADRLDVTPDGKVMIYDYKTGTPPSAKE-QEFFDRQLLLEAALTENFGWENFG 896

Query: 954  CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
               V    YI L  K        +      D     +   L E++      ++ F+S   
Sbjct: 897  AAPVLRAAYIGLGAKAGELDAPLE------DLSPADTWAQLAELIGAYMQPDKGFVSRRA 950

Query: 1014 LSEKSNIQSEYDHLARVAEWREEYD 1038
            L +  ++  +YD LAR  EW    D
Sbjct: 951  LQKAEDV-GDYDQLARYGEWTLADD 974


>gi|84501213|ref|ZP_00999418.1| hypothetical protein OB2597_12648 [Oceanicola batsensis HTCC2597]
 gi|84390504|gb|EAQ02992.1| hypothetical protein OB2597_12648 [Oceanicola batsensis HTCC2597]
          Length = 976

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 276/1043 (26%), Positives = 442/1043 (42%), Gaps = 87/1043 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             + KP +F + P + F R ++  LL        R D L P  L  VT+ V T+R  + +R
Sbjct: 4    PSDKPRLFGLPPGADFPRHLVEGLLE-------RTDGLPPEALGRVTLIVNTRRMARRIR 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
            + F       + +LP I+ + D+       D +   ++ PPVS ++R LEL  L+    +
Sbjct: 57   TLF---DAGPARLLPRIRLVTDL------GDNMELAHIAPPVSPLRRRLELVPLVRALID 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            + PD+                A    LA +LA + + +  E   +E + AL    +   W
Sbjct: 108  REPDLAPR-------------AALYDLADSLAGVFEEMRGEAVSFEAIRALDVSAHSDHW 154

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIP 240
              A  FL I      +   E     P      +     +       + P+I+AGSTGS  
Sbjct: 155  ARALKFLTIV----EQVEDEGALPDPAARMRLVADHLTDLWRAAPPQDPVIVAGSTGSRG 210

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
            AT  LM  VA  P GA+VLPG D  +P A+W+       N    + T   HPQ+   +L+
Sbjct: 211  ATNVLMQAVARLPQGAVVLPGFDFDLPPAVWD-------NNLDDSLTGEDHPQFRYRRLM 263

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
              LD +  DV+     S +   R+ ++S +  P   +D    +     +  + +    V 
Sbjct: 264  RSLDRRPGDVRLW-RESEQNDDRNRLVSLALRPAPVTDQWLAE--GPTLTGLDRAMETVT 320

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            LIEA + R+EA +IA+ LR + ++  + SALIT DR L+R+V   L R+ I  D SAG P
Sbjct: 321  LIEAPSGRDEAQAIALRLRKAAED-GQNSALITPDRLLSRQVTAALGRWDILPDDSAGEP 379

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L  T     L  +       +    +  L+KHPL   G       R    LE    R   
Sbjct: 380  LHLTPPGRFLRQVAELSHATHGAAGLLALLKHPLCHTGSDRGPHLRLTRGLETELRRNGP 439

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
               D   ++     + +   +      W   ++++    A   +  +   I  LV     
Sbjct: 440  PFPDGDTIRRFAAKQDSEIADA-----WAEWVADQAFGPAQDALPRLSDRIAALVARAEA 494

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG-SCIK 599
             +  CG                            LW    G+ + +   ++     +  +
Sbjct: 495  LSRGCGA----------------------GGAGTLWAGNAGQDVRAKLDELAGAADAAGE 532

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              A ++ +++T ++ G   +        + I GT ++R+   D +ILGGLNEG WP+  A
Sbjct: 533  IGAEDFTNLLTSILRGAEERDSKTPHPHILIWGTRDARVQGADLVILGGLNEGTWPEVPA 592

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R M++++ L   E+ IG +AHDF+ A G   +  TR+LR     T+ASRWL RL
Sbjct: 593  PDPWLNRAMRAEVGLLLPERRIGLSAHDFQQAIGAPEVWLTRALRGPEAETVASRWLNRL 652

Query: 720  LVL------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
              L      GG    +  + RG  +L    +L+         RP P PP+EA+PR  S +
Sbjct: 653  TNLLNGLGPGGRSALEGARARGAHWLGMASQLEQVDPVDPAPRPAPAPPVEARPRRLSVT 712

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            +IK LI DPYA+YAR +L+L  +    K+PD   RGT+ H ++   ++            
Sbjct: 713  QIKTLIRDPYAIYAREVLRLRPLDPLMKEPDALQRGTVLHEVMEHFVRAATADPERLSAD 772

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
             +  +               ++W     +I+ + +  E    +        +P +  +  
Sbjct: 773  ELLALTRRVLADNVPWAEARLLWLARMTRIAEAVVTGEAGRLAQGRPARFEVPGRATLPG 832

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
             G  LT  ADRIDL  +G   I DYKTG        Q   D QL LEAA  + G F  I 
Sbjct: 833  PGFDLTAKADRIDLDPAGNALIYDYKTGQMSSARQ-QMSFDLQLLLEAAMAERGGFEGIR 891

Query: 954  CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
             R V    ++ L           +      D  +++       ++    +  QPF +  R
Sbjct: 892  PRHVLRAAFVGLGSNTDEVDAPLE------DLPADQVWARFTTLIERYLDAGQPFTAR-R 944

Query: 1014 LSEKSNIQSEYDHLARVAEWREE 1036
               K+++  +YDHLAR  EW   
Sbjct: 945  AMFKADMPGDYDHLARFGEWDVS 967


>gi|188584139|ref|YP_001927584.1| double-strand break repair protein AddB [Methylobacterium populi
            BJ001]
 gi|179347637|gb|ACB83049.1| double-strand break repair protein AddB [Methylobacterium populi
            BJ001]
          Length = 1045

 Score =  524 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 297/1055 (28%), Positives = 468/1055 (44%), Gaps = 34/1055 (3%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P VFTI P +PF   +  AL++G LV        +P  LASVT+Y+PT+RA++ L 
Sbjct: 3    ATAAPRVFTIPPGAPFLPTLADALVSGRLV---GAVGHDPFALASVTLYLPTQRAVRALS 59

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN-----PPVSNIQRLLELARLI 116
            +   +  G  + +LP +  LG+  E +         +       P +  ++R L LARL+
Sbjct: 60   TVLAQRLGG-AALLPRMIPLGEADEAELDLSASTLLDTPEDLLHPSIPALERRLILARLV 118

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
              W   +   +  +  E P  +P SPA+A+ LA +L  ++D +  E   W ++ +    +
Sbjct: 119  QKWAETVDRELLPIDDEVPFLVPSSPADAVALAADLEGLMDALTVEGLPWSEIASAVEAE 178

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGS 235
            +  ++ L  DFL+IA+++W E L   + + P      L+ AEA+ L +     P+I+AGS
Sbjct: 179  HSRYFRLTLDFLRIAAEHWPEILAARSLADPTARARRLVLAEADRLTRDRPDDPMIVAGS 238

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
            TGS+PATARL++ VA  P GA+VLPGLD H+    W  I                HPQ  
Sbjct: 239  TGSVPATARLIAAVARLPRGAVVLPGLDLHLDEEGWEAIDGAGGTRDE---IAHGHPQAI 295

Query: 296  LAKL--LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            L  L     L + R +V+ LG +S E   R  ++S++  P +T+D         ++    
Sbjct: 296  LRALTGRTGLAVARGEVETLGTLSPEAVARERLLSQALRPAETTDAWARLDGAERLALAH 355

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
            +    +A++EA +EREEA+  A+ALR +L+     +AL+T DR LA RV  EL R+GI  
Sbjct: 356  EGMEGLAVVEAADEREEALVAALALRETLETPGATAALVTPDRGLALRVSAELARWGIAA 415

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            + SAG+ L+ +        +     +      +  L+ HP  + G     + RA  ALE+
Sbjct: 416  EDSAGLSLARSQAGRFARLVAELAAE-VAPARVIALLAHPFVRLGLTRSEVVRAAAALEI 474

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
              LRG            +       +     VP  + RL   D +L+  ++D +   +  
Sbjct: 475  GGLRGPAPIPK-NSFDGMRAAVALQRNATERVPRAKKRLKAIDWDLSENILDRLEIALDR 533

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
              T            ++     L     + +      +        +         +  E
Sbjct: 534  FRTDLQPAIG-----NLVALAALHREACERMMGGAETEEEIDDPSLDTLDGLFDDLESAE 588

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIE-KSSTLFILGTLESRLLNFDTLILGGLNEG 652
                +     ++    T L    TV          L ILG LE+RLL+ D ++LGGL+E 
Sbjct: 589  QE-ALPGRFSDYAAFFTALARDRTVACAQGNAHPRLRILGPLEARLLSVDRIVLGGLDEA 647

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
            VWP     + FL+R M+  + L   E+ IGQAAHDF    G    + TR+ +    PT+ 
Sbjct: 648  VWPVRQTTDAFLNRPMRGQVGLSPPERRIGQAAHDFVQGLGIHDAVVTRAAKREGSPTVP 707

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH--YKRPKPFPPLEAQPRTY 770
            SR+LQRL   GG   +     RGQ        LD   + P     RP P P     P   
Sbjct: 708  SRFLQRLRAFGGDAVWAGAIARGQRLRGLAAILDRGREAPPPRLTRPAPKPDPALFPSRL 767

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S +EI+ L+ DPY+++AR IL L+ +      P   +RG+L H I+ +  +        +
Sbjct: 768  SVTEIETLVRDPYSIFARHILGLEALEPMAVVPGAAERGSLIHKILGDFSQAHPGPLPAD 827

Query: 831  INHLMKQIIDSHFEKE-NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
               L+  I    F    +  P +   W   + +++ +FLE E   +  +  I      K+
Sbjct: 828  AETLLYAIALDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEASQRQGLRAIHAERSGKL 887

Query: 890  AIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             I        L+  ADRI++   G   I D+KTG  P   T      PQL+LEAA L  G
Sbjct: 888  TIPLGERTFTLSARADRIEVRADGGYCIVDFKTGTPPSNRTVFAGFSPQLTLEAAMLMHG 947

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDK----KKYSADELSEKSLKNLIEIVTLLQN 1003
            +F  +      +L Y+      +       K       +   + E+ L+ L  ++     
Sbjct: 948  AFEGLKAASAPDLLYVHASGGREPFRPIPVKAPPGDARAVAAIVEEHLERLRGLIARYMT 1007

Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
            GE  + S     +     +EYDHLARV EW    +
Sbjct: 1008 GEAAYPSRP-YPQYVRAYNEYDHLARVLEWSLAGE 1041


>gi|332559992|ref|ZP_08414314.1| putative helicase/exonuclease [Rhodobacter sphaeroides WS8N]
 gi|332277704|gb|EGJ23019.1| putative helicase/exonuclease [Rhodobacter sphaeroides WS8N]
          Length = 999

 Score =  524 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 267/1045 (25%), Positives = 430/1045 (41%), Gaps = 94/1045 (8%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
               P +F + P   F   ++  L         R     P  +A V +YV T+R  + +  
Sbjct: 4    TPGPRLFGLPPGVDFPAALVRGL-------RARMAGAAPEAMARVELYVNTQRMRRRVTE 56

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
                   + +  LP I+ + ++              L  PV  ++R LELA+L+      
Sbjct: 57   LMT---AEGTGFLPRIRLVTEL---------PPVPGLPAPVPPLRRRLELAQLVARLIEA 104

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
             PDI                +    L+ +LA++ID ++ E    E +  L    +   W 
Sbjct: 105  QPDIAPR-------------SALFDLSDSLAELIDEMQGEGVPPEAIARLDVADHSAHWQ 151

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                F+ I +  +     +    +    ++A+ R  A         P+I+AGSTGS   T
Sbjct: 152  RTQAFMAIVAPMFGADAPD----AQALARMAVERIAARWAEAPPDHPVIVAGSTGSRGTT 207

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
            +  M  VA  P GA+VLPG D  +P A+W  + +          T   HPQ+   +L+  
Sbjct: 208  SLFMQAVARLPQGALVLPGFDFDLPAAVWEGMDDAL--------TAEDHPQFRFHRLMGL 259

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            +     +V R  +       R+ +IS S  P   +D   T+     +  + +    + LI
Sbjct: 260  VGAGPAEVGRWTDEIPPSPARNRLISLSLRPAPVTDQWLTE--GGHLTGLVETARGMTLI 317

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            EA   R EA+++A+ LR + +E  +++ALIT+DR L R+V   L R+GI  D SAG PL+
Sbjct: 318  EAPGPRAEALAVAMILRKAAEE-GRRAALITSDRGLTRQVAAALDRWGIVPDDSAGKPLA 376

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             +     L  +     +      + TL+KHPL   G       R    LEL   R     
Sbjct: 377  LSAPGRFLRHVARLFGRRLTGETLLTLLKHPLTATGADRGNHLRWTRDLELHLRRKGPPF 436

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                DL      R A                    +        +   I  L        
Sbjct: 437  PAAADLALWAGTRPA--------------------DGVADWARWLGGLIEGLDAAGPRPL 476

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKAN 601
            +                               LW +E G+   +   ++  E     +  
Sbjct: 477  AD-------HVAAHLALAEALATGPAGDTTGELWLKEAGEAARAAVEELRREAPHGGELT 529

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
              ++ D+   ++    V+  ++    L I GTLE+R+   D +ILGGLN+G WP+    +
Sbjct: 530  PADYTDLFDAILARGEVREAVQARPDLMIWGTLEARVQGADLVILGGLNDGTWPQLPPPD 589

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
            P+L+R M+    L   E+ IG +AHD+  A     ++ TR+ R+    T+ SRWL RL+ 
Sbjct: 590  PWLNRQMRLKAGLLLPERRIGLSAHDYSQAVAAPEVVLTRATRDAEAETVPSRWLNRLMN 649

Query: 722  L-------GGTDFFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFS 773
            L       GG +    ++ RG+ +LD    L+      P   RP P PP+ ++P   + +
Sbjct: 650  LMSGLKAGGGPEALAGMRARGRDWLDLAAALEQPATPVPLATRPAPQPPVPSRPERLAVT 709

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR-INKNTPEIN 832
             I+ LI DPYAVYAR IL+L  +    + PD   RG++ H I+   +K R    + P   
Sbjct: 710  GIRTLIRDPYAVYARHILRLYPLDPLHRAPDARLRGSILHRILEAFVKDRAPGGDRPAER 769

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
              + +I ++   +E   P    +W     + +  FLE E         + +    ++ + 
Sbjct: 770  ARLMRIAEAVLAEEVPWPAARALWLARLDRAADFFLETEAAHA--GTPVVLEEEGRVDLT 827

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             +   LT   DRID+L  G + I DYKTG  P K+  ++  D QL LEAA  + G F  +
Sbjct: 828  PLRFTLTAKPDRIDVLPDGRLHILDYKTGTPPTKKQQEQ-FDKQLLLEAAMAERGGFRGL 886

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
               +VA + YI L    K++ +  D        L  +  + L  +V      EQ ++S  
Sbjct: 887  GPAEVARISYIGLGTSPKVESVETDAA------LLGQVWEGLHALVGRYLRREQGYVSR- 939

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037
            R         +YDHLAR  EW    
Sbjct: 940  RAMFGERFPGDYDHLARFGEWEMSD 964


>gi|170751474|ref|YP_001757734.1| double-strand break repair protein AddB [Methylobacterium
            radiotolerans JCM 2831]
 gi|170657996|gb|ACB27051.1| double-strand break repair protein AddB [Methylobacterium
            radiotolerans JCM 2831]
          Length = 1054

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 311/1065 (29%), Positives = 485/1065 (45%), Gaps = 42/1065 (3%)

Query: 1    MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
            M  ++  VFTI+   PF   +  ALL+G LV        +PL LA+VTIY+PT+RA + L
Sbjct: 1    MPARQ-AVFTISRGVPFLPTLAEALLSGRLVGPVAG---DPLALAAVTIYLPTRRAARAL 56

Query: 61   RSEFIEITG----KKSTILPIIKSLGDVVEEKFTADLLLSYN-----LNPPVSNIQRLLE 111
             +   E  G     ++T+LP +  LG+  E +               L+ P+  ++R L 
Sbjct: 57   GAILAERLGRDAPGQATLLPRMIPLGEADEAELDLAAEPLLEENADPLSIPMPPLERRLI 116

Query: 112  LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171
            LARL+  W   +   +  L  E P  +P SPA+A+ LA +L  ++D +  E   W ++ A
Sbjct: 117  LARLVQAWAKTVDRTLLPLDAEVPFLVPSSPADAVGLAGDLERLMDALTVEGLPWSEIGA 176

Query: 172  LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPI 230
                +Y  ++ L  DF+KIA++ W + L E   + PV     L+ AE   L +  T+ P+
Sbjct: 177  AVEAEYSRYFGLTLDFVKIAAENWPKLLAERGLADPVARARGLVLAEERRLSRSATQDPV 236

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            I+AGS GS+PATARL++ VA  P+GA+VLPGLD  +  A W+ I    T    S      
Sbjct: 237  IVAGSLGSVPATARLIAAVAKLPHGAVVLPGLDLDLDAAGWDGID---TGEGFSRVIAHG 293

Query: 291  HPQYSLAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
            HPQ  L +LL  + L+I R +V  LG        R+ ++S++  P DT+D         +
Sbjct: 294  HPQAVLHRLLGPENLNIGRAEVVALGEPDAGQAARAALLSQALRPADTTDAWAALDPAER 353

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
                +     +AL EA +EREEA+  A+ALR +L      +ALIT DR LA RV +EL R
Sbjct: 354  DTVARLGLDGLALAEAADEREEALVAALALRETLQTPGATAALITPDRGLAGRVAVELLR 413

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAI------FKLNDFMAIATLVKHPLAKFGFPEK 462
            +GI  + SAG+ L+ +    +                      +  L+ HP+   G P  
Sbjct: 414  WGIVAEDSAGLSLAGSAAGRLARLAAELAADLARDQADAIPARLIALLSHPMVHLGLPRP 473

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
             + R   ALE+  LRG   +     L+  +           H P  + RL + D ELA  
Sbjct: 474  DVVRGAAALEIGLLRGPVPAPGFDGLRKALA--AERAGPPEHRPRAKRRLKDVDWELAAD 531

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            L+D +                  G+  +             +        P         
Sbjct: 532  LLDRLDLVFRDF-----PGPDGAGDCDLVTTATGHREACDRLIAGPEDASPAETDGSLSC 586

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI-EKSSTLFILGTLESRLLNF 641
              +      +     +     ++    T L     V          L ILG LE+RLL+ 
Sbjct: 587  LDALFDDLEMAEPGLMPGRFDDYATFFTSLARERKVACSGEAPHPRLRILGLLEARLLSV 646

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
            D ++LGGL+EGVWP  T  + FL+R M+  + L   E+ IGQ AHDF  A G R  + TR
Sbjct: 647  DRVVLGGLDEGVWPVRTLTDSFLNRPMRERVGLNPPERRIGQMAHDFVQALGCRDAVITR 706

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
            +L+    PT+ SR +QRL  L G   +D++ + G+       +LD    +P  KRP P P
Sbjct: 707  ALKREGAPTVPSRLIQRLRALSGDARWDDVLRAGRRITGLAARLDAAPPEPRLKRPAPKP 766

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                 PR+ S +EI+ L+ DPY+++AR +L LD +      P    RG+L H++  E   
Sbjct: 767  DPALFPRSLSVTEIETLVRDPYSIFARHVLGLDPLDPLAAAPGVATRGSLVHDVFAEFAA 826

Query: 822  KRINKNTPEINHLMKQIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
            +      P+    +  +  + F + E   P++   W   + +++ ++L+ E + +  + +
Sbjct: 827  RHPADLPPDAAERLLNLAVNAFGEIEAEYPNLYAEWWPRYERMASAYLDWEAQRRPGLTR 886

Query: 881  IFVNIPAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
            ++  +  +  I        L   ADRI+L   G   I DYKTG  P  +       PQL+
Sbjct: 887  VYPEVSGRWVIPMGRETFTLRARADRIELRPDGTACIVDYKTGTPPSAKMIFTGFSPQLT 946

Query: 939  LEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKI----DCITNDKKKYSADELSEKSLKN 993
            LEAA L  G+F+ +   K   +L Y+      K            ++   + +  +    
Sbjct: 947  LEAAMLMHGAFADLPAAKTTPDLLYVHASGGRKPFVPIPVKPPRGEERGVEAIVAEHAAR 1006

Query: 994  LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
            L  +V     GE  + +     + ++    YDHLARV EW    D
Sbjct: 1007 LKGLVARFMTGEAAYTARP-YPQYASKYGAYDHLARVLEWSLAGD 1050


>gi|126460954|ref|YP_001042068.1| putative helicase/exonuclease [Rhodobacter sphaeroides ATCC 17029]
 gi|126102618|gb|ABN75296.1| putative helicase/exonuclease [Rhodobacter sphaeroides ATCC 17029]
          Length = 997

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 267/1045 (25%), Positives = 430/1045 (41%), Gaps = 94/1045 (8%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
               P +F + P   F   ++  L         R     P  +A V +YV T+R  + +  
Sbjct: 4    TPGPRLFGLPPGVDFPAALVRGL-------RARMAGAAPEAMARVELYVNTQRMRRRITE 56

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
                   + +  LP I+ + ++              L  PV  ++R LELA+L+      
Sbjct: 57   LMT---AEGTGFLPRIRLVTEL---------PPVPGLPAPVPPLRRRLELAQLVARLIEA 104

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
             PDI                +    L+ +LA++ID ++ E    E +  L    +   W 
Sbjct: 105  QPDIAPR-------------SALFDLSDSLAELIDEMQGEGVPPEAIARLDVADHSAHWQ 151

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                F+ I +  +     +    +    ++A+ R  A         P+I+AGSTGS   T
Sbjct: 152  RTQAFMAIVAPMFGADAPD----AQALARMAVERIAARWAEAPPDHPVIVAGSTGSRGTT 207

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
            +  M  VA  P GA+VLPG D  +P A+W  + +          T   HPQ+   +L+  
Sbjct: 208  SLFMQAVARLPQGALVLPGFDFDLPAAVWEGMDDAL--------TAEDHPQFRFHRLMGL 259

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            +     +V R  +       R+ +IS S  P   +D   T+     +  + +    + LI
Sbjct: 260  VGAGPAEVGRWTDEIPPSPDRNRLISLSLRPAPVTDQWLTE--GRHLTGLAEAARGMTLI 317

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            EA   R EA+++A+ LR + +E  +++ALIT+DR L R+V   L R+GI  D SAG PL+
Sbjct: 318  EAPGPRAEALAVAMILRKAAEE-GRRAALITSDRGLTRQVAAALDRWGIVPDDSAGKPLA 376

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             +     L  +     +      + TL+KHPL   G       R    LEL   R     
Sbjct: 377  LSAPGRFLRHVARLFGRRLTGETLLTLLKHPLTATGADRGNHLRWTRDLELHLRRKGPPF 436

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                DL      R A                    +        +   I  L        
Sbjct: 437  PAAADLALWAGTRPA--------------------DGVADWARWLGGLIEGLDAAGPRPL 476

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKAN 601
            +                               LW +E G+   +   ++  E     +  
Sbjct: 477  AD-------HVAAHLALAEALATGPAGDTTGELWLKEAGEAARAAVEELRREAPHGGELT 529

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
              ++ D+   ++    V+  ++    L I GTLE+R+   D +ILGGLN+G WP+    +
Sbjct: 530  PADYTDLFDAILARGEVREAVQARPDLMIWGTLEARVQGADLVILGGLNDGTWPQLPPPD 589

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
            P+L+R M+    L   E+ IG +AHD+  A     ++ TR+ R+    T+ SRWL RL+ 
Sbjct: 590  PWLNRQMRLKAGLLLPERRIGLSAHDYSQAVAAPEVVLTRATRDAEAETVPSRWLNRLMN 649

Query: 722  L-------GGTDFFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFS 773
            L       GG +    ++ RG+ +LD    L+      P   RP P PP+ A+P   + +
Sbjct: 650  LMSGLKAGGGPEALAGMRARGRDWLDLAAALEQPATPVPLATRPAPQPPVPARPERLAVT 709

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR-INKNTPEIN 832
             I+ LI DPYAVYAR IL+L  +    + PD   RG++ H I+   +K R    + P   
Sbjct: 710  GIRTLIRDPYAVYARHILRLYPLDPLHRAPDARLRGSILHRILEAFVKDRAPGGDRPAER 769

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
              + +I ++   +E   P    +W     + +  FLE E         + +    ++ + 
Sbjct: 770  ARLMRIAEAVLAEEVPWPAARALWLARLDRAADFFLETEAAHA--GTPVVLEEEGRVDLT 827

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             +   LT   DRID+L  G + I DYKTG  P K+  ++  D QL LEAA  + G F  +
Sbjct: 828  PLRFTLTAKPDRIDVLPDGRLHILDYKTGTPPTKKQQEQ-FDKQLLLEAAMAERGGFRGL 886

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
               +VA + YI L    K++ +  D        L  +  + L  ++      EQ ++S  
Sbjct: 887  GPAEVARISYIGLGTSPKVESVETDAA------LLGQVWEGLHALIGRYMRREQGYVSR- 939

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037
            R         +YDHLAR  EW    
Sbjct: 940  RAMFGERFPGDYDHLARFGEWEMSD 964


>gi|89056556|ref|YP_512007.1| hypothetical protein Jann_4065 [Jannaschia sp. CCS1]
 gi|88866105|gb|ABD56982.1| hypothetical protein Jann_4065 [Jannaschia sp. CCS1]
          Length = 986

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 274/1046 (26%), Positives = 454/1046 (43%), Gaps = 86/1046 (8%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            +    VF       F   +I  L       +       P  LA V I+V   R  + L++
Sbjct: 5    STTARVFATPLGVDFCAALIDGL-------DRALSGQGPEALARVEIHVANARMQRRLQT 57

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
             +I        +LP I+ +         ++      L P +S +   LELA+LI    + 
Sbjct: 58   LYIRR---GPGLLPRIRPV------LSLSETADLEGLPPAMSPLALRLELAQLIGKLIDA 108

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
             PD+                A    LA +LAD +  +  E    + + +L   ++   W 
Sbjct: 109  NPDLAPR-------------AALYDLADSLADFMGEMVEEGVTPDTIASLDMGEHSEHWT 155

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-AEHLMKGTKGPIIIAGSTGSIPA 241
             A DFL IA +     +   +  +P G Q A++    A+  +     P+I+AGSTGS  A
Sbjct: 156  RARDFLGIAQQV----IATGDRPTPEGRQAAVVDRLIAQWRINPPTHPVIVAGSTGSRRA 211

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T RLM  VA+ P GA++LPG+D  +P AIW  +     +   S      HPQY LAKLLD
Sbjct: 212  TFRLMEAVAHLPQGAVILPGIDRDMPGAIWRGL----LDGRRSGLAGEDHPQYRLAKLLD 267

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             + +    V   G  +  +  R+ V+S +  P   ++   T+    K+ ++    + V L
Sbjct: 268  AVGMDPATVPLWGRATPAVPARNAVVSLALRPAPVTNQWRTE--GPKLTDVSGAMAGVTL 325

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +EA + + EA +IA+ +R  + +  ++ AL+T DR LAR+V  +L R+ I  D SAG  L
Sbjct: 326  LEAPSPQMEATAIALRMRKGVAD-GQRVALVTPDRRLARKVTAQLDRWRILPDDSAGQVL 384

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            + T     L  +   +       A+  L+K+PL   G       R    LEL  LR    
Sbjct: 385  AQTAPGRFLRQVAEMLCGPVTAEAMVALLKNPLCNSGPDRGNHLRRTVDLELQLLRKGLT 444

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                   ++ ++D  A +K++     W + L++   E                       
Sbjct: 445  FPT----RAALMDWAAARKDDVDTTAWVTWLADHLLEPVE-------------------- 480

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKL-PNLWFEEEGKTLSSLFSKI-IETGSCIK 599
                  L +++   L  +    +     +     L+ +E G+   +L  ++     +   
Sbjct: 481  ---TAALPLAERVALHKSRADALAAGVDQTTTHELYKQEPGEKAETLLRELQAVADTGGA 537

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +A ++ D  T L     V+  +   + + I GT E+R+   D  IL GLNEG WP+  +
Sbjct: 538  MSARDYADFFTALAHDREVRFALRPHADVLIWGTQEARVQGADVTILAGLNEGTWPQAAS 597

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+L+R +++D  L+  ++ IG +AHDF+       +  +R+ R++   T+ +RWL RL
Sbjct: 598  ADPWLNRPLRADAGLRLPDRVIGLSAHDFQQGIAGGEVWLSRAKRDDETDTVPARWLNRL 657

Query: 720  LVLGGTD------FFDNLKKRGQCYLDWTRKLDYTTKQP-HYKRPKPFPPLEAQPRTYSF 772
            + L G           +++ RG  +L     L     +     RP P P    +    S 
Sbjct: 658  VNLLGGASDASSQALTDMQARGAEWLTLADTLSTPDARETPAPRPAPAPQNITRLTALSV 717

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            ++I++LI DPYA+YA R+L L  +   +  PD   RGT+FH I+ + I         +  
Sbjct: 718  TDIERLIRDPYAIYAARMLNLRALDPLRASPDARLRGTVFHRIMEQFITATPTDLPEDAG 777

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
             +   +      ++   P    +WRH    I   +L  E   ++  E   +       + 
Sbjct: 778  QVFMGLAGDILAQDAPWPAARHLWRHRLQTILPWYLAQEASFRALAEPWVLEERKDWHVP 837

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             +G+ L+G ADRID L  G V I DYKTG+ P     +   + QL L A   + G+F+  
Sbjct: 838  GLGMTLSGIADRIDSLPDGRVAIYDYKTGNLPTDR-MEIAYNKQLLLLALMGRGGAFAD- 895

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
                VA L Y+ L  K +I     D      D L +++ K L E++T  +     F S  
Sbjct: 896  RPLDVARLAYVGLGTKPEIRAQDFD------DGLLDETFKGLRELITHYRQPLVGFPSRR 949

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEYD 1038
               +++    +YDHLAR+ EW E  D
Sbjct: 950  SP-KQTTYAGDYDHLARLGEWDETMD 974


>gi|77462065|ref|YP_351569.1| putative helicase/exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|77386483|gb|ABA77668.1| putative Helicase/Exonuclease [Rhodobacter sphaeroides 2.4.1]
          Length = 997

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 268/1045 (25%), Positives = 429/1045 (41%), Gaps = 94/1045 (8%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
               P +F + P   F   ++  L         R     P  +A V +YV T+R  + +  
Sbjct: 4    TPGPRLFGLPPGVDFPAALVRGL-------RARMAGAAPEAMARVELYVNTQRMRRRVTD 56

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
                        LP I+ + ++              L  PV  ++R LELA+L+      
Sbjct: 57   LMTAEGAG---FLPRIRLVTEL---------PPVPGLPAPVPPLRRRLELAQLVARLIEA 104

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
             PDI                +    L+ +LA++ID ++ E    E +  L    +   W 
Sbjct: 105  QPDIAPR-------------SALFDLSDSLAELIDEMQGEGVPPEAIARLDVADHSAHWQ 151

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                F+ I +  +     +    +    ++A+ R  A         P+I+AGSTGS   T
Sbjct: 152  RTQAFMAIVAPMFGADAPD----AQALARMAVERIAARWAEAPPDHPVIVAGSTGSRGTT 207

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
            +  M  VA  P GA+VLPG D  +P A+W  + +          T   HPQ+   +L+  
Sbjct: 208  SLFMQAVARLPQGALVLPGFDFDLPAAVWEGMDDAL--------TAEDHPQFRFHRLMGL 259

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            +     +V R  +       R+ +IS S  P   +D   T+     +  + +    + LI
Sbjct: 260  VGAGPAEVGRWTDEIPPSPARNRLISLSLRPAPVTDQWLTE--GRHLTGLAEAARGMTLI 317

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            EA   R EA+++A+ LR + +E  +++ALIT+DR L R+V   L R+GI  D SAG PL+
Sbjct: 318  EAPGPRAEALAVAMILRKAAEE-GRRAALITSDRGLTRQVAAALDRWGIVPDDSAGKPLA 376

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             +     L  +     +      + TL+KHPL   G       R    LEL   R     
Sbjct: 377  LSAPGRFLRHVARLFGRRLTGETLLTLLKHPLTATGADRGNHLRWTRDLELHLRRKGPPF 436

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                DL      R A                    +        +   I  L        
Sbjct: 437  PAAADLALWAGTRPA--------------------DGVADWARWLGGLIEGLDAAGPRPL 476

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKAN 601
            +                               LW +E G+   +   ++  E     +  
Sbjct: 477  AD-------HVAAHLALAEALATGPAGDTTGELWLKEAGEAARAAVEELRREAPHGGELT 529

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
              ++ D+   ++    V+  ++    L I GTLE+R+   D +ILGGLN+G WP+    +
Sbjct: 530  PADYTDLFDAILARGEVREAVQARPDLMIWGTLEARVQGADLVILGGLNDGTWPQLPPPD 589

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
            P+L+R M+    L   E+ IG +AHD+  A     ++ TR+ R+    T+ SRWL RL+ 
Sbjct: 590  PWLNRQMRLKAGLLLPERRIGLSAHDYSQAVAAPEVVLTRATRDAEAETVPSRWLNRLMN 649

Query: 722  L-------GGTDFFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFS 773
            L       GG +    ++ RG+ +LD    L+      P   RP P PP+ A+P   + +
Sbjct: 650  LMSGLKAGGGPEALAGMRARGRDWLDLAAALEQPATPVPLATRPAPQPPVPARPDRLAVT 709

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR-INKNTPEIN 832
             I++LI DPYAVYAR IL+L  +    + PD   RG++ H I+   +K R    + P   
Sbjct: 710  GIRKLIRDPYAVYARHILRLYPLDPLHRAPDARLRGSILHRILEAFVKDRAPGSDRPTER 769

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
              + +I ++   +E   P    +W     + +  FLE E         + +    ++ + 
Sbjct: 770  ARLMRIAEAVLAEEVPWPAARALWLARLDRAAAFFLETEAAHA--GTPVVLEEEGRVDLT 827

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             +   LT   DRID+L  G + I DYKTG  P K+  ++  D QL LEAA  + G F  +
Sbjct: 828  PLRFTLTAKPDRIDVLPDGRLHILDYKTGTPPTKKQQEQ-FDKQLLLEAAMAERGGFRGL 886

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
               +VA + YI L    K++ +  D        L  +  + L  +V      EQ ++S  
Sbjct: 887  GPAEVARISYIGLGTSPKVESVETDAA------LLGQVWEGLHALVGRYMRREQGYVSR- 939

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037
            R         +YDHLAR  EW    
Sbjct: 940  RAMFGERFPGDYDHLARFGEWEMSD 964


>gi|254294693|ref|YP_003060716.1| hypothetical protein Hbal_2339 [Hirschia baltica ATCC 49814]
 gi|254043224|gb|ACT60019.1| conserved hypothetical protein [Hirschia baltica ATCC 49814]
          Length = 1026

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 272/1057 (25%), Positives = 439/1057 (41%), Gaps = 80/1057 (7%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            P +FTI P++ F   +   L     +        NP  L    I+ P KR+ + +   F 
Sbjct: 17   PRIFTIPPATSFLNALANTLSENLGL------KDNPAALTQTVIFCPNKRSSRAIAEAFH 70

Query: 66   EIT---GKKSTILPIIKSLGDVVEEKFTADL-LLSYNLNPPVSNIQRLLELARLILIWRN 121
            +I    G K+ + P I+ LGD+ ++   A + +    L P +S+ QR   LA+L+  W  
Sbjct: 71   KIAMGFGHKALLAPEIRVLGDLEDDHTIAPIGVSELELGPALSSGQRRGTLAKLVQFWST 130

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI-IETEEKKWEDLHALKNE-KYGM 179
            K                P+ P +AI  A  L  ++D     E   W  L  L  +     
Sbjct: 131  K------------AYGAPLPPRSAIAAADQLGSLLDQSAMGEGTDWSKLQGLVEDSDLAA 178

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGS 238
             W  +ADFL+I S+ W   L E  A+ P+  ++A  R  A     +  + PIIIAGSTG+
Sbjct: 179  HWKQSADFLEIISQAWPAHLEEQGATDPMARRVAAARTLANNWAARPPQHPIIIAGSTGA 238

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
             PAT  LM    N P GAI+LPGLD  I    W  I            +  +HPQY+L +
Sbjct: 239  TPATRLLMQAAMNLPQGAIILPGLDPDISEDAWKAI-----------ASSPSHPQYTLRR 287

Query: 299  LLDFLDIKREDVKRLGNV--SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK-- 354
             L  L + +  V +      + +   R  +I+++  P  T+      +      N  +  
Sbjct: 288  ALGKLGVDKSSVLKWPGAIETPDNTARRKLINEALAPASTTKSWTKRLEFLAGENTPEHL 347

Query: 355  ---CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                   ++LIEA++E EEA++ A+ LR +L+   K +AL++ D +L RRV   +TR+G+
Sbjct: 348  VNSGLKGLSLIEAEDEAEEALACALLLREALETPGKTAALVSPDGSLVRRVSALMTRWGV 407

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
            +I  S+G P   T H S+   +   +    D + + +L+KHPL + G+ E     A   L
Sbjct: 408  DIPPSSGTPFMQTHHGSLFALMFQWLRDEGDPVQLLSLLKHPLVRVGWDEDNYHSALVEL 467

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
            E       +           V         +        +   +  +L   L     QC 
Sbjct: 468  ESHKNEFRE--------DGTVRGPRRYDTLDALADRLGMQKRAQSAQLIRDLATAARQCE 519

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
                T   + +      + +   +  V+               LW   EG   +     +
Sbjct: 520  IRPSTMAQDIDGNVFARACARLAERLVSTENEAGS------TRLWRGVEGAQTARYLETL 573

Query: 592  IETGSCI-KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
             E  + +       W +    +     + PK  +   L I G LE+R    D +IL  LN
Sbjct: 574  AEIAAELGPVPPDLWTEFAEAIASESAIPPKGGEHPRLAIWGPLEARQQMRDVIILASLN 633

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
            E  WP   A + FL + ++ DL L   E+ +G +AHDF        +   RS R ++ P+
Sbjct: 634  ENSWPAAAAADSFLPKRLRKDLGLPDPEERLGLSAHDFAQLACAPDVKLVRSKRVDDKPS 693

Query: 711  IASRWLQRLLVLGGTDFFDNL-------KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
            +ASRWL RL  L                 +     L W R +         + P P PP+
Sbjct: 694  VASRWLWRLNTLAAGGLGSPEAVQKALEPEPKNNPLIWARSMRKARDYTPIQAPTPRPPV 753

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
            +A+P  +S S + +LI DPYAVYA  +LKL+ +P    +    +RGT  H  +     + 
Sbjct: 754  DARPTKFSVSRVARLIRDPYAVYASDVLKLNPMPAVGAESGPAERGTAIHAAVERYELEG 813

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
                       +  ++    +K         + R L+ + + +++    + +++I +  +
Sbjct: 814  ---------GQVIDLVTKELKKAGETDTAIELNRPLWSRAADAYIAWRNERETNIREKHL 864

Query: 884  NIPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
             I  ++  E       LT  ADRIDLLK     I D+KTG    K+  Q  ++PQL LEA
Sbjct: 865  EIEGELTFEISGRKYRLTAKADRIDLLKDNTFAIIDFKTGTPKTKKQLQSGLEPQLPLEA 924

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK---SLKNLIEIV 998
            A    G F ++     + L Y+ L          N K     +    +   + +  I++V
Sbjct: 925  AIAAGGGFPKLPTADTSQLIYVSLAPGAASTKADNGKPVKLDEGPMAEAQKAREGFIKLV 984

Query: 999  TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWRE 1035
                   Q + S  R     ++ S+YD LAR  EW  
Sbjct: 985  QSYATISQAYYSKPRAEFSWDV-SDYDRLARRDEWSS 1020


>gi|217977593|ref|YP_002361740.1| double-strand break repair protein AddB [Methylocella silvestris BL2]
 gi|217502969|gb|ACK50378.1| double-strand break repair protein AddB [Methylocella silvestris BL2]
          Length = 1043

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 290/1056 (27%), Positives = 480/1056 (45%), Gaps = 41/1056 (3%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            K NVFTIAP +PF +    A L+G +VE F     NPL LA  TIYVPT+RA + L  EF
Sbjct: 3    KKNVFTIAPGAPFLKTFAEAFLDGRVVEGF-CAGENPLELAEATIYVPTRRAARALTDEF 61

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTA--------DLLLSYNLNPPVSNIQRLLELARLI 116
                  K+ +LP I  LG + E +           +          +  I R ++LA L 
Sbjct: 62   FRALPTKAVLLPRILPLGALDESETELLFEDGGADEFSAPLEPPLAIGEIDRRMQLAELC 121

Query: 117  LIWRNKL--------PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
            L W   L         D  + L     L +  + A+A  L+ +LA +ID +  E+  W  
Sbjct: 122  LSWSRLLRHAIVRVEADGARVLDERESLLVGATAADAWGLSGDLARLIDELIIEDIDWAR 181

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-AEHLMKGTK 227
            L  L +E +  +W +  DFLKIA   W   L +         Q++L+  +          
Sbjct: 182  LDPLASEGFDDYWRITLDFLKIAITQWPHILEQRGLVDRARRQVSLIERQSLALRDAPGL 241

Query: 228  GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
            GP++  GSTGS  ATARL+  +A+ P GAIVLPGLD  +                     
Sbjct: 242  GPVVAIGSTGSNRATARLLDAIASAPRGAIVLPGLDLKLDE----AAFALVARAADEGEP 297

Query: 288  YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
              THPQ +L +LL  L++ R++V+ LG ++     R   IS++  P + +D         
Sbjct: 298  AFTHPQAALCRLLRTLNMSRDEVRPLGALTKAQDARERFISEALRPAEATDAWIAYRQAI 357

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELT 407
                +++  + V LIEA +EREEA+++AIA+R +L+     +AL+T DR LARRV  EL 
Sbjct: 358  DPALLEEALAGVTLIEAADEREEALALAIAMRHALERPDGTAALVTPDRELARRVAAELL 417

Query: 408  RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
            R+G+ ++ SAG PL +     +   +            +A L+ H   + GF  + ++R 
Sbjct: 418  RWGVRVEDSAGEPLGSGEAGLLARLVAACAADDMSAATVAALMAHGALRLGFSREEIARL 477

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
            +  LE+  LR           ++  ++  A Q +  H    Q R+   + +     +  +
Sbjct: 478  RPLLEIGVLRAAAGGKLRDPARA--IELAAAQADGPHAHPAQKRIFPRESDALRDFLMRL 535

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
               + P++          G   ++ W +   T L  +   E  +  +    E    L   
Sbjct: 536  EAALRPML-------EAGGERDLAFWVEAHRTALAAIRAGEPEEEDSGEDGEALAALFEE 588

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
             +  +   S ++ +A  +      +     +         L ILG LE+RL++ D ++LG
Sbjct: 589  LA--LSATSEMRFDAEAYQFFFAAVAGEARLGAAGRTHPRLKILGLLEARLMDVDVMLLG 646

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
            GL+E VWP     + FL+R M++ L L   E+ +GQ AHDF  A G   ++ +R+ +   
Sbjct: 647  GLDESVWPPQARADAFLNRPMRAALGLSPPERKLGQTAHDFVQAMGRDKVVLSRAAKRGG 706

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-HYKRPKPFPPLEAQ 766
             PT+ASR++QRL  LGG   +     RG+ YLD  R +D     P   +RP+P PP+  +
Sbjct: 707  APTVASRFIQRLAALGGP-AWAACAARGKTYLDLARLIDRPAAAPAPLRRPEPKPPVALR 765

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR-IN 825
            P   S ++I+ L  DPYAVYA  ILKL  +    + P   + G+  H  I          
Sbjct: 766  PNRLSVTKIETLRRDPYAVYAETILKLLPLDSIGRTPGPAETGSAIHAAIEAFTASFGPG 825

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
                     ++ ++    E     P     +     ++   ++  E   +S +++I    
Sbjct: 826  PLPAGARDTLRALLLKALEDNLADPGFAAFYVPRLKQMIDFYMGFEASRRSGLDEIRTEA 885

Query: 886  PAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
              ++     +     LT  ADRI+   SG + + D+KTG  P  +  +    PQL+LEAA
Sbjct: 886  AGRLEFFLSDGSPFALTARADRIERAASGKLSLIDFKTGAPPGIKEIEVGFAPQLTLEAA 945

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
              K G+F      ++ +  Y++L             K  + ++++++   +L+E+++  +
Sbjct: 946  MAKRGAFGPAGQDEI-DALYVKLNGPGGGKVKPVVFKGRTVEDVADQHFAHLVELLSQFR 1004

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
            + ++ +       + +   + YDHLARV EW    +
Sbjct: 1005 DPDRSYPPRPFP-KFAKAYNAYDHLARVKEWSAGGE 1039


>gi|323138128|ref|ZP_08073201.1| double-strand break repair protein AddB [Methylocystis sp. ATCC
            49242]
 gi|322396590|gb|EFX99118.1| double-strand break repair protein AddB [Methylocystis sp. ATCC
            49242]
          Length = 1027

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 296/1048 (28%), Positives = 480/1048 (45%), Gaps = 45/1048 (4%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
            NVFTIAP +PF    + A L G +V +       PL +A  TIYVPT+RA + L ++F  
Sbjct: 4    NVFTIAPGAPFLETFVEAFLAGEIVASV-SRASPPLAMARATIYVPTQRAGRALAAQFAR 62

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIWRNK 122
               + +T+LP I  LG + E +  A    + +    L  P+  ++R L LA+L++ W   
Sbjct: 63   AYDRGATLLPRILPLGGLEESETAALFGGAEDFDDALPAPIEELERRLLLAQLVMQWSKA 122

Query: 123  LPDIIKDLYPES--------PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174
            +   I  + P          PL +  SP+ A  LA +L  +ID    E+   E +  + +
Sbjct: 123  IGRAILSIDPTGAPVLDETEPLLVASSPSGAYALAADLGALIDEFIIEDVAPEAIDRIVD 182

Query: 175  EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIA 233
            + +  +W +   FL+IA   W + L E         Q  L+ A+   L +   G P+I  
Sbjct: 183  DSFDKYWSITTQFLRIALHQWPDILSERGRIDAASRQKILLEAQVAALAQQKHGGPVIAL 242

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
            GSTG+ P TARL++ +A   NGA++LPGLD  +    W  + E      S +    +HPQ
Sbjct: 243  GSTGAHPTTARLLAAIAALENGAVILPGLDREMSPDAWARVGE------SDDEPAFSHPQ 296

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
              L +LL+ + + REDV  LG VS E+ GR  +++++ LP   +         +   +  
Sbjct: 297  TMLKRLLNVMGVHREDVCELGKVSPELSGRRALVAEAMLPAIETSAW-RLFRASHGASFV 355

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
                DV+ IEA +ER EA+++A+ +R +L+  ++ +AL+T DRNLARRV  EL RF I I
Sbjct: 356  SALEDVSAIEAPDERMEALALALFMREALETPQRTAALVTPDRNLARRVAAELRRFDIEI 415

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            D S G  L++T    +   +     +    + +A L+ HPLA  G   + ++     +E+
Sbjct: 416  DDSGGASLASTSEGVLARLVAEIGAEGFSAVNVAALLAHPLALLGHAREKVAALAPLVEI 475

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
              LR          L + V             P       +E           I   +  
Sbjct: 476  GVLRELG--AGQHGLSASVAKAREFAGARHAHPAAHRISDDE--------WRDIEALLRQ 525

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            L        S  G  ++S W +      + +             ++  + L  LF ++I 
Sbjct: 526  LEAAFATYVSLRGENALSTWAQAHRAAFEALTQGAS------EADDGAQALFGLFDRLIA 579

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
              +    +A+ +  +  R+    T++        L ILG LE+RL+  D +++GGL+EGV
Sbjct: 580  AEAPPGFDALSYASLFDRISFETTLRGPRRAHPRLKILGPLEARLIEADLVLIGGLDEGV 639

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
            WP  T    FL+R M+  L+L   E+ IGQ+AHDF MA G + ++ +R+++    PT+AS
Sbjct: 640  WPPQTDTGAFLNRSMRRQLDLSPPERRIGQSAHDFVMALGAQSVVLSRAVKRGGSPTVAS 699

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
            R+L RL  L G D F   K RG   L     LD+        RP P PP++ +P   S +
Sbjct: 700  RFLTRLEALAG-DAFAGCKARGDRMLAIAAALDHPRDYVTIARPAPRPPIDLRPTKLSVT 758

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI-NKNTPEIN 832
             +++L  DPYA+YA  +LKL  +     +    +RGT  H  + E + +       P+  
Sbjct: 759  RVERLRRDPYAIYAEYVLKLVPLAPLGAEIGARERGTALHEALAEFVMRHPRGPLPPDAR 818

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
              +  +         L P           +     L+ E++ +S   +IF+       + 
Sbjct: 819  AQLHDMARRKLSDFFLDPAFATFTWPRIAQGLDHALDFEQERRSEGCEIFIETRGAWRLP 878

Query: 893  ---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
                    LT  ADRI++   G   + DYKTG  P  +       PQL+LEAA ++AG+F
Sbjct: 879  LEDGSTFTLTAVADRIEVDPHGRAYVFDYKTGAPPSVKQVGAGWAPQLTLEAAMVEAGAF 938

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
            + +    V    Y+ LK       +  + K     ++       + ++++  +    P+ 
Sbjct: 939  ADVGVHPVGGAAYVGLKDGGDTQWL--NWKDRGFADVVATHRVEVEKMLSQYRASATPYP 996

Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            S   ++  S    +YDHLARV EW    
Sbjct: 997  SRPFVAFVS-GVGDYDHLARVKEWSRGG 1023


>gi|298290317|ref|YP_003692256.1| double-strand break repair protein AddB [Starkeya novella DSM 506]
 gi|296926828|gb|ADH87637.1| double-strand break repair protein AddB [Starkeya novella DSM 506]
          Length = 1013

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 310/1039 (29%), Positives = 487/1039 (46%), Gaps = 30/1039 (2%)

Query: 1    MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
            M    PN+ TI  S+PF   +  ALL+G LVE F     +P  LAS T+++PT+RA + L
Sbjct: 1    MSRPDPNLLTIPASAPFLAVLADALLDGRLVEGFAPR-HDPFALASATVFLPTRRAGRLL 59

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
                        T+LP I  LGDV E+          +    V  + R L LA L+  WR
Sbjct: 60   AEALRARMESGVTLLPRIVPLGDVDEDSLAF-AESFTDPPRAVPGMTRRLALASLVRRWR 118

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
              L         +  +++   P     LA  LA +ID +  ++  WE L  L   ++ ++
Sbjct: 119  RLLAGD------DGRVAVAAGPGAEFALADALAHLIDEMAAQQVPWEKLDTLVPGQHDLY 172

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
            W +A DFLKIA ++W   L EL A      +  L+ AEAE L     GP+I AGSTGS+P
Sbjct: 173  WDMALDFLKIAREFWPALLDELGAVDASVRRDRLIAAEAERLRAAPAGPVIAAGSTGSMP 232

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
            ATARL++ VA+  +G +VLPGLD  +    W+ +T+             +HPQY LA LL
Sbjct: 233  ATARLLAAVAHLTDGCVVLPGLDTDLDARSWDHLTD-------DEAPAPSHPQYGLALLL 285

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                    D  R        +GR  ++S++  P  +++   +         I    ++V+
Sbjct: 286  KAHMRVGRDAVR-SLAPPAPHGRERLLSEALRPVASTEAWASLAERLGAAEIDAALAEVS 344

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            +IEAD+ REEA++IA+ALR +L+E  + +AL+T DR+LARRV  EL RF + ID SAG P
Sbjct: 345  VIEADDAREEALAIAVALREALEEPGRSAALVTPDRDLARRVAAELLRFEVAIDDSAGEP 404

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            LS +        + +A       + ++ L++HPLA+FG     L +A +ALEL+ LRG +
Sbjct: 405  LSESAPGRFARLVADACDAELAPVPLSALLRHPLARFGLERGALDQAADALELMVLRGPR 464

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                   L   V           H    ++ +  + + LA  L + I +   PL+     
Sbjct: 465  PEAGADGLVRAV---AGFSPGLHHSSDPRAAIDTDRQALAAGLAERIARAFGPLLALGAG 521

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK- 599
            ++     L             ++    E               LS  F  + E  S    
Sbjct: 522  EHPFATLLEAHRAAVAAAWSAEDGGAAEDAI--------ALAELSKTFEAMAEGASEAPV 573

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                ++   +  L+    V+P +   + L ILG LE+RL++ D ++L GL EG WP    
Sbjct: 574  MRLADYAAALPLLLADRPVRPPLLPGARLRILGPLEARLVSVDRMVLAGLVEGTWPSAVR 633

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+LSR M++ L L+  E+ IG +AHDF    G   LI +   +    PT+ SR+LQRL
Sbjct: 634  TDPWLSRPMRAALGLEAPERRIGLSAHDFAQGCGAPELILSHPRKLGGAPTVPSRFLQRL 693

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
              + G   +   K RG  +      ++         RP+P PP+E +P+  S +EI+  +
Sbjct: 694  EAVSGEARWKMAKLRGDRFRRLAALIEEAPAASRIARPEPAPPVELRPKRLSVTEIETWL 753

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
             DPY +YAR +L+L  +    + P   +RG+  H+ +    +        E    +    
Sbjct: 754  RDPYTIYARHVLRLRPLDMLDEAPGAAERGSAIHDALGAFAQAFPEALPAEPEAGLLAFG 813

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
               F +    P    +W   F ++   ++  E   ++   ++F  +  +MA+      LT
Sbjct: 814  REAFRELEAFPAEYALWWARFERLVPRYIGWERARRADTRRVFAELGGRMALAGGRFALT 873

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
            G ADRI+ L+ G + I D+KTG  P  +       PQL LEAA   AG F  +     A 
Sbjct: 874  GRADRIEQLREGGLAIIDFKTGAVPTAKQTAAHYSPQLPLEAAMAAAGGFRDLPAEGAAA 933

Query: 960  LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
            L Y+RL      +    D+ + +   L+  +L+ L +++   ++  + + S  R   +  
Sbjct: 934  LTYVRLGTSELKEVGAVDRDETAFG-LAASTLERLEQLIATFEDPSRGYASLARPMFRGR 992

Query: 1020 IQSEYDHLARVAEWREEYD 1038
               +YDHLARV EW    +
Sbjct: 993  F-GDYDHLARVKEWSTGGE 1010


>gi|83594764|ref|YP_428516.1| hypothetical protein Rru_A3435 [Rhodospirillum rubrum ATCC 11170]
 gi|83577678|gb|ABC24229.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 1018

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 291/1056 (27%), Positives = 467/1056 (44%), Gaps = 70/1056 (6%)

Query: 8    VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67
            V TI    PF   +   +++            +PL    VT+ +PT+RA + LR  F+ I
Sbjct: 6    VQTIPAGLPFLDTLAAGIVD-----RLGDRTADPLAATRVTVLLPTRRACRALREAFLRI 60

Query: 68   TGKKSTILPIIKSLGDVVEEKFTADLLLS------YNLNPPVSNIQRLLELARLILIWRN 121
             G K+ +LP I  LGD+ E++     L         +  PP++ ++R + LARLIL   +
Sbjct: 61   EGGKAALLPRILPLGDLEEDESAGAGLADGALRPTLDFAPPIAPLERQVLLARLILARDS 120

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN--EKYGM 179
                   D           +PA A+ LA++LA ++D+ +TE      + AL         
Sbjct: 121  AKATAGGDSAM--------TPAQALRLAQDLAGLLDLAQTEHIDLSTVAALVPQTSPLAE 172

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP-IIIAGSTGS 238
             W L  DFL + +  W   L   +A  P  ++  ++ A+A           +I AGSTGS
Sbjct: 173  HWQLTLDFLALLTSVWPGLLAAHHALDPADHRNKVLDAQAAAWAAHPPAGPVIAAGSTGS 232

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
            +PATA L++T+A+ P G +VLPGLD  +    W  + +             +HPQ  + +
Sbjct: 233  VPATAALLATIAHLPQGLVVLPGLDIGLDDESWEALED-------------SHPQAGMKR 279

Query: 299  LLDFLDIKREDVKRLGNVSN-----EMYGRSMVISKSFLPPDTSDMRNTDILENK--IPN 351
            LLD L + R+ V+                R++++ ++  P  T+D               
Sbjct: 280  LLDTLGLSRQAVRFFSETPPRGAIAAPPARALLVREALRPAATTDRWRRLRESGPSGGEA 339

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
              +    V L+ A   REEA +IA+ +R +L+   + +ALIT DR LARRV   L R+G+
Sbjct: 340  FARALDGVTLVRAAGPREEAAAIAVMMRGALETPGRTAALITPDRALARRVAAALGRWGL 399

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
             +D SAG PLS T   + L     A+      +A+ +L++HPLA  G            L
Sbjct: 400  RVDDSAGRPLSQTPVGAFLRLAAQAVADGLGPVALLSLLQHPLAAGGEDPVVFRARLRLL 459

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
            +   LRG +    +  L   +                ++    + +      ++ +    
Sbjct: 460  DREVLRGPRPDPGVAGLAQAI----------------KAADDPDMERHLGGWLERLEALA 503

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ-NVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
             P  T   +         I    +      +      E      LW  ++G+  + L + 
Sbjct: 504  GPFCTLMDSDEPVDVAALIDAHMRFCEGLAEAREGGVEKPGATRLWAGDDGEAAALLGAD 563

Query: 591  IIETGSCI-KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            + E    +       +  ++  L+DG  V+PK +  S LF+ G LE+RL   D LILGGL
Sbjct: 564  LTEAAPSLGAIAPRHYPALLDALMDGRAVRPKRDLHSRLFLWGPLEARLQRADLLILGGL 623

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
            NEG WP      P++SR M   + L   E+ IG AAHD   A     +  TR+LR    P
Sbjct: 624  NEGGWPAAVDTGPWMSRPMLDQIGLPQPERRIGLAAHDVSQALCAPEVAITRALRVEGTP 683

Query: 710  TIASRWLQRLLVLGGTD----FFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLE 764
            T+ SRWL RL  + G       +   ++RG   L   R L+    ++     P+P PPL 
Sbjct: 684  TVPSRWLTRLDAVIGATGLDKEWAKARQRGDRLLALARSLEQPQGERKPCPAPEPRPPLA 743

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
             +PR  S + I+  + DPYA+YA+ IL L  +   + DP  +D GTL H  + + +    
Sbjct: 744  DRPRRLSVTRIETWMRDPYALYAQFILGLSELDPLEADPGVSDYGTLVHGALEDFVGLYP 803

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                 +    + ++    F      P +   W   F +I+H   E E + +  I ++F  
Sbjct: 804  KDLPGDPEAEIIRLGTLRFAPHMTRPGVRAFWWPRFLRIAHWIAEREIERRPEILEVFAE 863

Query: 885  IPAKMAI--ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
              A+M +   +    LT  ADRIDL + G + + DYKTG  P K+  +  + PQL LEA 
Sbjct: 864  RRAEMTLTGPAGPFILTAKADRIDLRRDGTLAVIDYKTGMLPSKKEVESGLSPQLPLEAL 923

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
                G F  I  + V++L + +L+       I   +     + ++E + K L +++T   
Sbjct: 924  LASRGCFPGIAGKPVSDLGFWKLRGDRLGGEIR--QAADDPEGVAEAAHKGLSDLITAFD 981

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
            N + P+ +           + Y HLARV EW E+ D
Sbjct: 982  NPDTPYFARPHPDHAPRF-NPYQHLARVKEWAEKGD 1016


>gi|294675595|ref|YP_003576210.1| double-strand break repair protein AddB [Rhodobacter capsulatus SB
            1003]
 gi|294474415|gb|ADE83803.1| double-strand break repair protein AddB [Rhodobacter capsulatus SB
            1003]
          Length = 977

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 262/1051 (24%), Positives = 427/1051 (40%), Gaps = 96/1051 (9%)

Query: 1    MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
            M    P VF + P   F RE++  L+        R     P  +A V + +   R  + +
Sbjct: 1    MPPADPQVFALPPGVDFARELVQGLVQ-------RMRDEPPEAMARVRLILNAGRMSRRV 53

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
            R EF    G  +  LP I+ + D+         +    L  PV  ++R LELA L+    
Sbjct: 54   REEF---DGLGTRFLPRIELISDLAR-------VPMPGLPAPVPALRRKLELACLVDRLA 103

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-EKYGM 179
              LP                       L  +L  ++  +++E    E    L     +  
Sbjct: 104  RGLPGFETGSG-------------VFSLTDSLLALLAEMQSEGVHPEVFERLDIQASHAE 150

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
             W  +  F++I S+Y+   L           +  +         +  +  II+AGSTGS 
Sbjct: 151  HWRQSLAFIRIVSRYFETDLDAEG-----RQRRVVETMARTWADRPPQERIILAGSTGSR 205

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
             AT  LM  VA  P GA+VLPG D  +P   W ++        S       HPQ+    L
Sbjct: 206  GATRLLMQAVAALPRGALVLPGFDFDMPEPAWASL-------CSGPIPIEDHPQFRFRAL 258

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            LD L +    V R      E  GR+ ++S +  P   +D    +     + ++    ++V
Sbjct: 259  LDGLTLSPAQVARWTETLPEAPGRNALVSLALRPAPVTDQWMREGQA--LADLPAACANV 316

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
             LIEA + R+E+++IA+ LR ++    KK+ALI+ DR L RRV   L R+ I  D SAG 
Sbjct: 317  TLIEATDPRQESLAIALVLREAV-FRGKKAALISPDRMLTRRVAAALDRWSILPDDSAGQ 375

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP-EKYLSRAKNALELVALRG 478
            PL  T    ++  L     +     ++  ++KHPL   G        R     EL   R 
Sbjct: 376  PLPLTAPGRLIRHLARLPGRKIPMESLLVILKHPLVATGSALRGAHLRLTREFELSLRRK 435

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                 D   L+                                   D   Q  +  +   
Sbjct: 436  GPAFPDAEALRDWGGT-----------------------------ADPERQHWSDWLAAL 466

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN--LWFEEEGKTLSSLFSKIIETG- 595
             +     GN  +S W +     L          +    LW  E G+      S +     
Sbjct: 467  IDAVPAGGNHPVSAWLETLSALLDGFAAGPGGSVAASELWLGEAGQAAFRTLSDLAAQDE 526

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
            + +  +A  + D+I  L++   V+  +     +  LGTLE+R    + ++L GLNE  WP
Sbjct: 527  TGLTVSAANFADLIDTLLNEGQVRSTLAAHPLVTFLGTLEARAHGAELVVLAGLNEKSWP 586

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
            +  + +P+LSR M+ D  L   E+ IG +AHDF+ A     ++ +R+ R++   T+ SRW
Sbjct: 587  EAPSPDPWLSRKMRLDAGLLLPERQIGLSAHDFQQAIAAPEVVLSRARRDSEAETVPSRW 646

Query: 716  LQRLLVLG-------GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
            L RLL L        G +    ++ RG  +LD   +LD   ++          P      
Sbjct: 647  LNRLLNLAGGLTAAQGPEALAQMRARGARFLDLASQLDLPQERLAPAPRPAPRPPAEARP 706

Query: 769  T-YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
                 + IK LI DPYA+YA RIL+L  +   K  P+   RG   H ++   +     KN
Sbjct: 707  RQLPVTAIKTLIRDPYAIYAARILRLRPLDPLKPGPNPRLRGEALHRVVELFVTGFDPKN 766

Query: 828  TPEI-NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
            + +     + ++ ++  ++    P    +W H   +I+   +  E + ++      +   
Sbjct: 767  SLDSGQKHLSELAETVLQEMIPWPSTQRLWLHRLLRIAPQLVAQEAQRRAEATPAVIETS 826

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            A + +   G  LT   DRIDL   G   + DYK+G  PK+    +  D QL LEAA ++ 
Sbjct: 827  ASIELGPTGFTLTARPDRIDLQHDGTALVYDYKSGTPPKEAEV-RHFDKQLLLEAAMIER 885

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
            G+F+QI  R+VA + Y+ L    +   +   ++         ++   L E++       Q
Sbjct: 886  GAFAQIGPRQVAGMSYVHLGGSGECRMLALGRED------VAQTWTRLQELIARYLARSQ 939

Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             F +   +    +I  +YDHL+R  EW    
Sbjct: 940  GFAARRAMQMSRDI-GDYDHLSRFGEWDITD 969


>gi|158422337|ref|YP_001523629.1| hypothetical protein AZC_0713 [Azorhizobium caulinodans ORS 571]
 gi|158329226|dbj|BAF86711.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 1015

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 309/1038 (29%), Positives = 499/1038 (48%), Gaps = 35/1038 (3%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             VFTI  S+PF + +  A+L+G LV  F     +PL LAS TIY+PT+RA +      +E
Sbjct: 3    RVFTIPSSAPFLKTLAHAMLDGHLVPGFAPRG-DPLALASATIYLPTRRAGRLFADAMLE 61

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP-PVSNIQRLLELARLILIWRNKLPD 125
              G ++ +LP I  LGDV E+        +    P  V+ + R + LA L+  WR+ L +
Sbjct: 62   AVGGEAVLLPRIVPLGDVDEDALAFSEEAALLAPPQAVAGVHRRIALAGLVARWRDALAE 121

Query: 126  IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
                   E    +   PA  + LA  L  + D + T    W  L  L  E++  ++ ++ 
Sbjct: 122  ------GEGQAMVAAGPAATMALADELGRLFDQMTTAGIAWSRLDDLVPEEHDAYFEISL 175

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK--GTKGPIIIAGSTGSIPATA 243
             FL+IA + W   L E+    P   + AL+ AE   L       GP+I AGSTGS+P TA
Sbjct: 176  QFLRIARQAWGAHLEEMGLVDPAERRDALVGAEERRLAALGAGAGPVIAAGSTGSLPTTA 235

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            RL+  +A+ P GA+VLPGLD H+    +  +       T+  T+   HPQ+ LAKLL  L
Sbjct: 236  RLLKAIASLPQGAVVLPGLDLHMEETAFQLL-------TAEATSAPDHPQFGLAKLLGTL 288

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
             ++R DV  L   +   +GR  ++S++    +T++   +           +  ++V +++
Sbjct: 289  GLERRDVTAL--ATPAPWGREALLSEALRQSETAEQWASLSERLPDAKRAQALAEVRVVK 346

Query: 364  ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
            A + REEA+++A+ LR +L +   ++AL+T DR+LARRV  EL RFGI ID SAG+PL+ 
Sbjct: 347  ALDPREEALAVALELRDALTKPDMRAALVTHDRDLARRVAAELERFGIAIDDSAGVPLAE 406

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
            T  + +   +   + +    + +  L+  P        + L+ A  ALEL+ALRG +   
Sbjct: 407  TQPARLARLVAKTVAEGCAPVPLFALLSQPGLSLDLAPEILAEAVAALELIALRGPRPRS 466

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
                   L     A      H    + R+ E+ + LA  LV  ++  + PL         
Sbjct: 467  GA---AGLAAAVAAFDAAKVHERDPRRRVGEDRQALAADLVARLVPALEPLSALAEA--- 520

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
              G + ++D     +  ++++         +  +    + L           +       
Sbjct: 521  --GKVPLADLVAAHIATIESLTAPLDPDANDPAWASLAEAL---IDIRDGAPAGPAMTLA 575

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
             + D I+ L+    V+P+      + ILG LE+RL+  D ++LGGL EG WP  T  +P+
Sbjct: 576  AYADAISALLADRVVRPRQRGEERIRILGPLEARLVAVDRVVLGGLVEGSWPPETRTDPW 635

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
            LSR M+++L L   E+ IG AAHDF  A G R ++ T   +     ++ SR+LQRL  + 
Sbjct: 636  LSRPMRAELGLDQPERRIGLAAHDFAQAFGAREVVLTYPDKVGGTQSVPSRFLQRLSTVA 695

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
            G D +     RG+ +     +LD   + P   +P P PP E +P+  S +E++  + DPY
Sbjct: 696  GEDLWQAAIARGEAWRQAAARLDDGPRVPRAAQPAPKPPRELRPKKLSVTEVETFLRDPY 755

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
            +++AR +L L  +      P   +RG+  H+ +    K       P+ +  +       F
Sbjct: 756  SIFARHVLALQPLEALDAAPGGAERGSALHDALGAFAKDYPEDLPPDAHAQLLAYGRRAF 815

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI--GIHLTGF 901
            EK  + P    IW   F +++   +E E + ++S++++       + I  +     LTG 
Sbjct: 816  EKLEVFPAEHAIWWARFERVAAFVVEFERERRASLKRVVAETGGGLPIRLLHSDFQLTGR 875

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
            ADRI++   G ++I DYKTG  P  +       PQL LEAA    G F  +    VAN  
Sbjct: 876  ADRIEIRTDGELNILDYKTGTAPSAKQGAT-FSPQLPLEAAMAVRGGFRDVPAANVANFL 934

Query: 962  YIRLKQKF-KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
            Y+ LK             +K SA  ++E +L+ L E++   +N EQ + + L   +    
Sbjct: 935  YVELKGGAVAGREKPGVDEKSSAMAMAEDALERLRELLLAFENEEQGYRA-LAAPQWRGR 993

Query: 1021 QSEYDHLARVAEWREEYD 1038
               YDHLARV EW    +
Sbjct: 994  FGPYDHLARVREWALGAE 1011


>gi|83309520|ref|YP_419784.1| hypothetical protein amb0421 [Magnetospirillum magneticum AMB-1]
 gi|82944361|dbj|BAE49225.1| Inactivated superfamily I helicase [Magnetospirillum magneticum
            AMB-1]
          Length = 975

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 284/1036 (27%), Positives = 437/1036 (42%), Gaps = 75/1036 (7%)

Query: 8    VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67
            VFTI P + F   +   LL             +PL LA + I +PT+RA + +   F+ +
Sbjct: 7    VFTIPPGAAFVDTLAAQLLAE--------AGGDPLALADMEILLPTRRACRAMSDAFLRL 58

Query: 68   TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
            +G +  +LP ++ LGD+ EE+         +L P VS  +R+L LARLIL         +
Sbjct: 59   SGGRPLLLPRLRPLGDMDEEELELSGADPLDLPPAVSPTERVLILARLILTAAQAQKGHV 118

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
                         SP  A+ LA  LA ++D ++ E   +  L  L  E Y   W L   F
Sbjct: 119  P------------SPDQAVRLASELAKLLDAVQVERLDFAGLAKLVPEDYADHWQLTLKF 166

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPATARLM 246
            L I ++ W   L E     P      +M A+ E    +  +  +I AGSTGS PATA L+
Sbjct: 167  LTILTEAWPRILAERGTLDPEDRLNRVMAAQIEAWRVRPPRHKVIAAGSTGSRPATADLL 226

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
            + VA  P G +VL GLD  +  A W  +                HPQY L  LL  L ++
Sbjct: 227  AAVAALPAGRVVLAGLDRAMDEASWAALDPA-------------HPQYGLKALLARLGVE 273

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            R  V+ L +  +    R  +++++  P  T +        +      +    V  +EA  
Sbjct: 274  RHGVRPLTSDVDLRQDRVRLLAEALRPAATCEAW-----RDLPALDARVLDGVWRLEAPT 328

Query: 367  EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
             REEA +IA+ +R  LD     +AL+T DR LARRV  EL R+GI ID SAG PL     
Sbjct: 329  PREEAGAIALMMRRELDRPGHTAALVTPDRGLARRVAGELERWGIRIDDSAGRPLGLNEP 388

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
             + L   +  +       A+   +KHPLA  G            LE + LRG + +  + 
Sbjct: 389  GAFLRLAVEMVADEFSPHALLACLKHPLAAGGMETGAFRALVRRLERLNLRGPRPAPGVA 448

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
             L+  V DR                            +  +     PL            
Sbjct: 449  GLRQAVKDR-----------------------RLSSWLADLETMAAPLADRLKADEG--- 482

Query: 547  NLSISDWTKLTVTCLQNVCLDE--HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
              S++D  +  +   + +  D+           E                 +        
Sbjct: 483  --SLADLLRAHMEFAEWLAGDDLLPGPARLWRGEAGEAAARFAADLAAAAPALGDLAGHC 540

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            +  +   L+    V+   +    LFI G LE+RL + D LILGGLNEG WP     +P++
Sbjct: 541  YPALFDELMGAVAVRSAWDHHPRLFIWGPLEARLQHADLLILGGLNEGTWPAPPEADPWM 600

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
            SR MQ+   L   E+ IG +AHDF        ++ +RS R +  PT+ SRWL RL  +  
Sbjct: 601  SRPMQAAFGLAPPERRIGLSAHDFAQGFAAPRVVLSRSSRVDGTPTVPSRWLMRLDAVMK 660

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                   +  GQ +LDW   LD   +    + P P PP+ A+PR  S +EI+  + DPYA
Sbjct: 661  GSGLAFDQDAGQ-WLDWHALLDRPERWTRPEIPAPAPPVSARPRRLSVTEIETWMRDPYA 719

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
            +YA+ +L+L  +     DP   + G++ H  +   ++        +    + +I    FE
Sbjct: 720  IYAKHVLRLRALDPIDADPGAAEYGSMVHEALELFLEAWPRDLPGDPQGELLRIGREVFE 779

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--ESIGIHLTGFA 902
             +   P +   W   F  ++      E   +  + ++       + I   +    LT  A
Sbjct: 780  AKVTSPALWAFWWPRFDSVARWVAAKEVARRPGVARVHAEAGGALEIEAPAGPFTLTAKA 839

Query: 903  DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
            DR+D +K G + + DYKTG  P+         PQL LEA   + G F  +   +V+ L Y
Sbjct: 840  DRLDEMKDGTLALIDYKTGTPPRAREVAAGFAPQLPLEAVIARHGGFGGVRAAEVSELLY 899

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022
             +LK   +            A  L+ ++L+ L  +V +  +   P+ +     E +   S
Sbjct: 900  WQLKGGAQGGE--ERAAGGDAATLAAEALEGLHALVAVFDDPATPYAARPHP-EHAPKYS 956

Query: 1023 EYDHLARVAEWREEYD 1038
            +Y HLARV EW    D
Sbjct: 957  DYLHLARVREWASGGD 972


>gi|221641018|ref|YP_002527280.1| RecB family exonuclease-like protein [Rhodobacter sphaeroides KD131]
 gi|221161799|gb|ACM02779.1| RecB family exonuclease-like protein [Rhodobacter sphaeroides KD131]
          Length = 982

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 263/1032 (25%), Positives = 422/1032 (40%), Gaps = 94/1032 (9%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
             F   ++  L         R     P  +A V +YV T+R  + +              L
Sbjct: 2    DFPAALVRGL-------RARMAGAAPEAMARVELYVNTQRMRRRITELMTAEGAG---FL 51

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
            P I+ + ++              L  PV  ++R LELA+L+       PDI         
Sbjct: 52   PRIRLVTEL---------PPVPGLPAPVPPLRRRLELAQLVARLIEAQPDIAPR------ 96

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
                   +    L+ +LA++ID ++ E    E +  L    +   W     F+ I +  +
Sbjct: 97   -------SALFDLSDSLAELIDEMQGEGVPPEAIARLDVADHSAHWQRTQAFMAIVAPMF 149

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                 +    +    ++A+ R  A         P+I+AGSTGS   T+  M  VA  P G
Sbjct: 150  GADAPD----AQALARMAVERIAARWAEAPPDHPVIVAGSTGSRGTTSLFMQAVARLPQG 205

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            A+VLPG D  +P A+W  + +          T   HPQ+   +L+  +     +V R  +
Sbjct: 206  ALVLPGFDFDLPAAVWEGMDDAL--------TAEDHPQFRFHRLMGLVGAGPAEVGRWTD 257

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                   R+ +IS S  P   +D   T+     +  + +    + LIEA   R EA+++A
Sbjct: 258  EIPPSPDRNRLISLSLRPAPVTDQWLTE--GRHLTGLAEAARGMTLIEAPGPRAEALAVA 315

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
            + LR + +E  +++ALIT+DR L R+V   L R+GI  D SAG PL+ +     L  +  
Sbjct: 316  MILRKAAEE-GRRAALITSDRGLTRQVAAALDRWGIVPDDSAGKPLALSAPGRFLRHVAR 374

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
               +     A+ TL+KHPL   G       R    LEL   R         DL       
Sbjct: 375  LFGRRLTGEALLTLLKHPLTATGADRGNHLRWTRDLELHLRRKGPPFPAAADLALWA--- 431

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                                  +        +   I  L        +            
Sbjct: 432  -----------------GPRPADGVADWARWLGGLIEGLDAAGPRPLAD-------HVAA 467

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKANAIEWIDIITRLID 614
                               LW +E G+   +   ++  E     +    ++ D+   ++ 
Sbjct: 468  HLALAEALAAGPAGTTTGELWLKEAGEAARAAVEELRREAPHGGELTPADYADLFDAILA 527

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
               V+  ++    L I GTLE+R+   D +ILGGLN+G WP+    +P+L+R M+    L
Sbjct: 528  RGEVREAVQARPDLMIWGTLEARVQGADLVILGGLNDGTWPQLPPPDPWLNRQMRLKAGL 587

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL-------GGTDF 727
               E+ IG +AHD+  A     ++ TR+ R+    T+ SRWL RL+ L       GG + 
Sbjct: 588  LLPERRIGLSAHDYSQAVAAPEVVLTRATRDAEAETVPSRWLNRLMNLMSGLKAGGGPEA 647

Query: 728  FDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
               ++ RG+ +LD    L+      P   RP P PP+ A+P   + + I+ LI DPYAVY
Sbjct: 648  LAGMRARGRDWLDLAAALEQPATPVPLATRPAPQPPVPARPERLAVTGIRTLIRDPYAVY 707

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR-INKNTPEINHLMKQIIDSHFEK 845
            AR IL+L  +    + PD   RG++ H I+   +K R    + P     + +I ++   +
Sbjct: 708  ARHILRLYPLDPLHRAPDARLRGSILHRILEAFVKDRAPGGDRPAERARLMRIAEAVLAE 767

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
            E   P    +W     + +  FLE E         + +    ++ +  +   LT   DRI
Sbjct: 768  EVPWPAARALWLARLDRAADFFLETEAAHA--GTPVVLEEEGRVDLTPLRFTLTAKPDRI 825

Query: 906  DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL 965
            D+L  G + I DYKTG  P K+  ++  D QL LEAA  + G F  +   +VA + YI L
Sbjct: 826  DVLPDGRLHILDYKTGTPPTKKQQEQ-FDKQLLLEAAMAERGGFRGLGPAEVARISYIGL 884

Query: 966  KQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
                K++ +  D        L  +  + L  ++      EQ ++S  R         +YD
Sbjct: 885  GTSLKVESVETDAA------LLGQVWEGLHALIGRYMRREQGYVSR-RAMFGERFPGDYD 937

Query: 1026 HLARVAEWREEY 1037
            HLAR  EW    
Sbjct: 938  HLARFGEWEMSD 949


>gi|159045977|ref|YP_001534771.1| double-strand break repair helicase AddB [Dinoroseobacter shibae DFL
            12]
 gi|157913737|gb|ABV95170.1| double-strand break repair helicase AddB [Dinoroseobacter shibae DFL
            12]
          Length = 988

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 265/1045 (25%), Positives = 434/1045 (41%), Gaps = 80/1045 (7%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P VF +     F  E +  LL        R     P  LA V I V T R  + L+
Sbjct: 7    AQDSPRVFGVPIGLDFPAETVAGLLE-------RLGSQPPHALAQVEILVNTGRMQRRLQ 59

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
                +    ++  LP I+ + D+  E        +      +S ++R+L+L RL+L    
Sbjct: 60   EVLSDR--GRAGFLPKIRLITDLGTE------AGTDPAPATLSPLRRMLDLRRLVLGLLE 111

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              PD+                + A+ L  +L  +++  E E    E L AL  E     W
Sbjct: 112  TTPDLAPR-------------SAALDLTISLVSLLEECEGEGVSLEQLAALDVEDLSAHW 158

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A  F+ I   +  +    +        + A++R  A+      + PI+IAGSTGS   
Sbjct: 159  QRALAFISIIGPFLKDSGGAVGP--EGRQRAAVLRKIAQWQDTPPRHPILIAGSTGSRGT 216

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            TA LM+ VA  P GA++LPG D   P  +W  +++              HPQ+  A+LL 
Sbjct: 217  TALLMTAVARLPQGALLLPGFDTDQPPKVWAEMSDALIG--------EDHPQFRFARLLQ 268

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             LD+    +    + +    GR+ ++S +  P   +D          + ++ +  ++  L
Sbjct: 269  ALDLDPASLPLWTDTAPPAPGRNRLVSLALRPAPVTDQW--RAEGPDLRDLPEALANTTL 326

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            IEA ++REEA+SIA+ALR S     K++ALIT DR L R+V   L R+ I  D SAG PL
Sbjct: 327  IEAASQREEALSIAVALRDSAA-AGKRAALITPDRGLTRQVTAALDRWRIEPDDSAGRPL 385

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGNK 480
              +     L+ +   +       A+  L+KHPL            R    LEL   +   
Sbjct: 386  VLSAPGRFLSHVAAMMGAELSASALLILLKHPLTHSERPDRGDHLRHSRDLELHLRKAPF 445

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                   L++                   SR            +D +L  + PL T +  
Sbjct: 446  VELSEARLRAWAA-------------SSPSRTDSPADPARAAWMDWVLATVGPLTTLEDA 492

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIK 599
               T   +             +            LW +  G+   ++   +  E      
Sbjct: 493  PLDTLATVHR-------NASERLAAGPGAEGAGGLWDKTAGEKAKAVLDALALEAAHGGS 545

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              + ++  ++ R++  E V+  +     + I GTLE+R+   D +IL GLN+G+WPK   
Sbjct: 546  FASGDFAALLARMLAQEEVRDPVRPDPRIMIWGTLEARVQGADVVILAGLNDGIWPKRPD 605

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +P+++R M+ +  L   E+ +G +AHDF+ A G R +I TR+ R++   T+ SRWL R+
Sbjct: 606  PDPWMNRKMRHEAGLLVPERQVGLSAHDFQQAMGAREVILTRATRDSEAETVPSRWLNRI 665

Query: 720  LVLGG------TDFFDNLKKRGQCYLDWTRKLDYTTKQ-PHYKRPKPFPPLEAQPRTYSF 772
              L              ++ RG   +   R LD      P  KRP P P     P   S 
Sbjct: 666  TNLLEGLSDESRAALAGMRTRGAAIVTRARGLDRPAAVMPLAKRPSPIPAPGQFPPRISA 725

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            S ++ LI DP+ +Y   +L L  +    +  D   RGT+ H ++   + + +   T    
Sbjct: 726  SRVETLIRDPFEIYCGTVLGLRPLDPLDRPADAALRGTVLHKVLETALSQVMA-GTEMTA 784

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
             L++QI     ++    P +   WR  F   +    E E           +    ++ + 
Sbjct: 785  TLLRQIAARVLDEHVPWPEVRTQWRARFESYATQLAEAEVARLRRATPAALERRGELTLA 844

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
            S G+ LT  ADRID+   G   I DYKTG  P ++  +     QL LEA   +AG F  +
Sbjct: 845  S-GVRLTCEADRIDIAPDGTAIIYDYKTGTVPGEKEVEA-FTKQLHLEAVIAEAGGFEDL 902

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
                V+ + Y+++ +  KI  +T +           ++     +I+    +GE+ F +  
Sbjct: 903  PPLTVSEIAYLQINKDLKIRALTFEPGDVG------RARDEFAKIMDDFLSGERSFTAR- 955

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037
            R+       S+YDHL+R  EW +  
Sbjct: 956  RMPRDMKYVSDYDHLSRFGEWDQSD 980


>gi|258543654|ref|YP_003189087.1| nuclease [Acetobacter pasteurianus IFO 3283-01]
 gi|256634732|dbj|BAI00708.1| nuclease [Acetobacter pasteurianus IFO 3283-01]
 gi|256637788|dbj|BAI03757.1| nuclease [Acetobacter pasteurianus IFO 3283-03]
 gi|256640842|dbj|BAI06804.1| nuclease [Acetobacter pasteurianus IFO 3283-07]
 gi|256643897|dbj|BAI09852.1| nuclease [Acetobacter pasteurianus IFO 3283-22]
 gi|256646952|dbj|BAI12900.1| nuclease [Acetobacter pasteurianus IFO 3283-26]
 gi|256650005|dbj|BAI15946.1| nuclease [Acetobacter pasteurianus IFO 3283-32]
 gi|256652995|dbj|BAI18929.1| nuclease [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656049|dbj|BAI21976.1| nuclease [Acetobacter pasteurianus IFO 3283-12]
          Length = 1029

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 264/1069 (24%), Positives = 452/1069 (42%), Gaps = 86/1069 (8%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             + TI    PF  ++         +        N   +    I +P +RA + L   F+ 
Sbjct: 2    KLATIPAHLPFLDQLA--------LRWIETAHHNIEAIGEGIIVLPGRRAARALTEAFLR 53

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADL----LLSYNLNPPVSNIQRLLELARLILIWRNK 122
                +S +LP I  +G + E +          L+ +L P V+ + RL  LARL+L     
Sbjct: 54   HMDGQSVLLPRIVPIGALDEAELGLSAGIGGELALDLPPAVAGMTRLAVLARLVLQ---- 109

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWW 181
                      +       +   A  LAK LAD++D  E       E L     E +   W
Sbjct: 110  ---------ADKAFGTRPTLDQAWPLAKALADLMDEAEWSGVNLAERLPEAVQENFAEHW 160

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK----GPIIIAGSTG 237
             +   FL+I ++ W E L E    +PV  Q+AL+ A+A+   K  +     PI  AG T 
Sbjct: 161  QIILRFLEIVTQAWPEWLKENGVMNPVARQVALLEAQADLWRKLAQQGEITPIWAAGFTH 220

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
             +  T +++  V   P G I+LPGLD  +    + ++ +             +HPQ  L+
Sbjct: 221  VMQPTVKVLQAVLECPAGKIILPGLDMMMAEETFLSLPD-------------SHPQAGLS 267

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
             LL  L+I R+ V+           R+  +++  LP         + L +   +      
Sbjct: 268  SLLKNLEITRDKVEVWEGEGTGSE-RAATLARVLLPA--------EALGDWSHSGGAELE 318

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            +V  ++A +++EEA++I++ +R ++++   + AL+T DR LA RV  EL R+G+  D SA
Sbjct: 319  NVYRLDAADQQEEAVAISMIMREAIEKPAHRVALVTPDRVLAARVATELARWGVLADDSA 378

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L  T  + +L  +   +      +++ +++KHPL   GF           LE   LR
Sbjct: 379  GSSLVDTPAAVLLRLVAQMVDSKFSPVSLLSVLKHPLVACGFAAGVCRATARLLERAILR 438

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL--LVDHILQCITPLV 535
            G         L  +V   +                ++       L   ++ +  C+ P++
Sbjct: 439  GPAPPPGFAALCQVVKSALENPNEREKAKLEGGVTADRPFGPVALSVFMERLEFCLEPVL 498

Query: 536  TYKTNKNST---------CGNLSISDWTKLTVTCLQNV-CLDEHRKLPNLWFEEEGKTLS 585
             ++ +                  + D     +  ++ +   DE      LW  EEG  L+
Sbjct: 499  GWELDAAEAGMQIAQDLEQHCAPVPDLLAALIATVERLVATDEESASERLWRGEEGNLLA 558

Query: 586  SLFSKIIETGSCIKANAIEWID-IITRLIDGETVKPKIEK-----SSTLFILGTLESRLL 639
            S  ++++     +       +D ++T ++  E V  +           + I G  ESRL 
Sbjct: 559  SQLTELMLASEVLPPQPPVVLDGLLTAVLAPERVAMRRGGDPKSLHPRVLIWGLFESRLQ 618

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF-EMANGTRHLI 698
              +T+ILGGL+EGVWP      P++SR M+  + L + E+ +GQA HDF   A     +I
Sbjct: 619  TAETVILGGLSEGVWPPVVDAGPWMSRPMRQRMGLPSPEQAVGQAGHDFFASAAAAGTVI 678

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-HYKRP 757
             + + R    P + +RWL RL                   L W  KLD           P
Sbjct: 679  LSSARRREGAPVVPARWLTRLDAFLAG---RKGHIPNHPALLWLNKLDQPVGPAIPVAPP 735

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
            +P PP+  +PR  S +EI+  I DPYA+YA+ IL+L+ +P  ++  D +D G + H  + 
Sbjct: 736  QPMPPVALRPRRLSVTEIETWIRDPYAIYAKHILRLEVLPELEEAADASDYGMIVHKALE 795

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
              +K             +  +     ++  L P +   W     +I+   ++ EEK ++ 
Sbjct: 796  RWVKAYGVTWPDNAEKKLCDLFSESLQEHVLRPALRAWWAPRLTRIAQWVVQAEEKRRNE 855

Query: 878  I---EKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
                  I   I  +++I         + G ADRI+L   G V + DYKTG  P  +    
Sbjct: 856  HGVPRAILTEIRGRVSIMDAPGGKFDIVGRADRIELNADGHVIVQDYKTGTLPSAKDVLA 915

Query: 932  LIDPQLSLEAAALKAGSFSQID--CRKVANLFYIRLKQKFKIDC--ITNDKKKYSADELS 987
               PQL LEAA +  G F ++    R++++L Y RL    +     +   ++  S  +L+
Sbjct: 916  GWSPQLPLEAAMIIRGGFKEVPEHSREISDLIYWRLTGGAEPGEEVVVKTREALSLTDLA 975

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREE 1036
            E++ +NL+  +      +QP++SH     +     +Y  LARV EW   
Sbjct: 976  EQTWENLLLRIAAYDQPDQPYLSHPHPGREPRFA-DYARLARVPEWNSA 1023


>gi|241761922|ref|ZP_04760007.1| double-strand break repair protein AddB [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
 gi|241373602|gb|EER63174.1| double-strand break repair protein AddB [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
          Length = 993

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 241/1055 (22%), Positives = 411/1055 (38%), Gaps = 96/1055 (9%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63
            +K  +FTI     F   ++  L+             +P+ LA   I +P  R+I+ +   
Sbjct: 3    EKSRLFTIPFHRSFADALVEGLIKRY---------DDPMTLAQGLILLPNNRSIRAITEA 53

Query: 64   FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIW 119
            F+  +     +LP +  +GD + +      L   +    L P +  ++R   L RL+   
Sbjct: 54   FVRQSSSG-LLLPRMVPVGDPLLDDRLGAFLDPVDMIDPLPPAIPPLERHFRLTRLVKKV 112

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL----KNE 175
              K    I                 A  LA+ LA  +D +   E   E L  L      E
Sbjct: 113  MQKQGRTIA-------------VPEAHRLAEELALTLDQLMAAEIDPEQLTQLIDPMAEE 159

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--GPIIIA 233
            +    W  +   L+     W E L +         +  L+   A+          PII A
Sbjct: 160  ELARHWQASLKLLECIITEWPEELKKTGQIESQERRNRLLDRLADRWQTQPPSEKPIIAA 219

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS--NTTYSTH 291
            G+    P +ARL+  ++   +G +VLPGLD ++    W  +     +  +     +  +H
Sbjct: 220  GAITGSPVSARLLRVISEMEDGLVVLPGLDNNMSDEEWQLLGPHERDPDTGIKQPSLESH 279

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYG-RSMVISKSFLPPDTSDMRNTDILENKIP 350
            PQ+ L  LLD + + R++V       N     R   I     P   +D          +P
Sbjct: 280  PQFQLKLLLDRMGVDRKEVIEWDPPKNYHPDNREQAIRHVMAPARYTDRWR------SLP 333

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
              ++ F ++++IE  +  EEA  IA+ALR +++E  + +AL+T DR LA RV   L RFG
Sbjct: 334  EKERAFPNLSVIETAHPEEEAQVIALALREAVEEKGQTAALVTPDRALAIRVSALLKRFG 393

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            I+ D SAG PLS T    +L  L++        ++   + KHPL  FG           +
Sbjct: 394  IDADDSAGRPLSLTPPGLLLLDLVSLAADHFSAVSFLAIAKHPLVAFGEDRDLWRDHIRS 453

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
            L+++  RG      +  + + + + +  Q  +  +  W                +     
Sbjct: 454  LDMIL-RGPLLRNGLAGITAKIKEAVDHQTADPELLEWW---------------EKTKIP 497

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
               L             L ++   K+       +          +W E  G   + L ++
Sbjct: 498  FQALD------QQFQTVLPLTKIVKILRETANQIAG------EKIWAEAAGHLAADLIAE 545

Query: 591  I--IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            I  +           ++  ++ +L+D + V+P       +FI G +E+RL + D +I   
Sbjct: 546  IESLAADHNEDMRFSDFAHVLRQLMDKQAVRPMTGGHPRIFIWGLIEARLQHADLMIAAS 605

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
            LNE VWP     +P+L+  ++S+L L   E  IG AAHDF    G + ++ TR+ R+   
Sbjct: 606  LNETVWPPIKEADPWLAPRIRSELGLPGLELRIGIAAHDFSSVLGAKKILLTRARRDARA 665

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
            PT+ SR+  RL  +                  W R+LD         RP P PP+  +P+
Sbjct: 666  PTMPSRFWLRLEAMASNLH------HADNLPYWARQLDEPQGFRPVTRPAPNPPVLDRPK 719

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              + +    L +DPY+ YA  IL L  +     +P    RG+L H+I+   +K+  ++  
Sbjct: 720  RIAVTRFDSLQSDPYSYYASNILGLRKLDPVDAEPTAAWRGSLIHSILENWVKEDNSRIG 779

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNIPA 887
                  +     +  E  N       +W     +         +K  +     + V    
Sbjct: 780  KLKPRAL-----AFLESINAHIIQKTLWLPRLLQAIDWIEGEVQKNAAEGRTILDVEREG 834

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            +  I   GI L GF DRID +  G + I DYKTG  P     +     QL L    ++  
Sbjct: 835  RSQIN--GIELFGFVDRIDRMGDGSLAIVDYKTGTPPSAAAVKNGDMLQLVLLGLLIEHN 892

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEIVTL 1000
                I   +V+   Y  + Q  K          + + K     ++    + +  I +   
Sbjct: 893  GIKDI-KGQVSAFEYWSMAQDLKKKTAGYSRSVLGSGKNALLPEDFLNMAEERFIRVTND 951

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWRE 1035
              + + PF +     +K  +  +Y  L R  EWR 
Sbjct: 952  YLHNQTPFTARPHRGKK--LYDDYVQLMRFDEWRS 984


>gi|260752462|ref|YP_003225355.1| double-strand break repair protein AddB [Zymomonas mobilis subsp.
            mobilis NCIMB 11163]
 gi|258551825|gb|ACV74771.1| double-strand break repair protein AddB [Zymomonas mobilis subsp.
            mobilis NCIMB 11163]
          Length = 993

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 243/1055 (23%), Positives = 413/1055 (39%), Gaps = 96/1055 (9%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63
            +K  +FTI     F   ++  L+             +P+ LA   I +P  R+I+ +   
Sbjct: 3    EKSRLFTIPFHRSFADALVEGLIKRY---------DDPMTLAQGLILLPNNRSIRAITEA 53

Query: 64   FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIW 119
            F+  +     +LP +  +GD + +      L   +    L P +  ++R   L RL+   
Sbjct: 54   FVRQSSSG-LLLPRMVPVGDPLLDDRLGAFLDPVDMIDPLPPAIPPLERHFRLTRLVKKV 112

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL----KNE 175
              K    I                 A  LA+ LA  +D +   E   E L  L      E
Sbjct: 113  MQKQGRTIA-------------VPEAHRLAEELALTLDQLMAAEIAPEQLTQLIDPMAEE 159

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--GPIIIA 233
            +    W  +   L+     W E L +         +  L+   A+          PII A
Sbjct: 160  ELARHWQASLKLLECIITEWPEELKKTGQIESQERRNRLLDRLADRWQTQPPSEKPIIAA 219

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS--NTTYSTH 291
            G+    P +ARL+  ++    G +VLPGLD  +    W  +     +  +     +  +H
Sbjct: 220  GAITGSPVSARLLRVISEMEGGLVVLPGLDNSMSDEEWQLLGPHERDPDTGIKQPSLESH 279

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYG-RSMVISKSFLPPDTSDMRNTDILENKIP 350
            PQ+ L  LLD + + R++V       N     R   I     P   +D          +P
Sbjct: 280  PQFQLKLLLDRMGVDRKEVIEWDPPKNYHPDNREQAIRHVMAPARYTDRWR------SLP 333

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
              ++ F ++++IE  +  EEA  IA+ALR +++E  + +AL+T DR LA RV   L RFG
Sbjct: 334  EKERAFPNLSVIETAHPEEEAQVIALALRAAVEEKGQTAALVTPDRALAIRVSALLKRFG 393

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            I+ D SAG PLS T    +L  L++        ++   + KHPL  FG           +
Sbjct: 394  IDADDSAGRPLSLTPPGLLLLDLVSLAADHFSAVSFLAIAKHPLVAFGEDRDLWRDHIRS 453

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
            L+++  RG      +  + + + + +  QK +  +  W                +     
Sbjct: 454  LDMIL-RGPLLRNGLAGITAKIKEAVDNQKADPELLAWW---------------EKTKIP 497

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
               L             L ++   K+       +          +W E  G   + L ++
Sbjct: 498  FQALD------QQYQSVLPLTKIVKILRETANQIAG------EKIWAEAAGHLAADLIAE 545

Query: 591  I--IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            I  +           ++  ++ +L+D + V+P       +FI G +E+RL + D +I   
Sbjct: 546  IESLAADHNEDMRFSDFAHVLRQLMDKQAVRPMTGGHPRIFIWGLIEARLQHADLMIAAS 605

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
            LNE VWP     +P+L+  ++S+L L   E  IG AAHDF    G + ++ TR+ R+   
Sbjct: 606  LNETVWPPIKEADPWLAPRIRSELGLPGLELRIGIAAHDFSSVLGAKKILLTRARRDARA 665

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
            PT+ SR+  RL  +                  W R+LD         RP P PP+  +P+
Sbjct: 666  PTMPSRFWLRLEAMAANLH------HADNLPYWARQLDEPKGFRPVTRPAPNPPVLDRPK 719

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              + +    L +DPY+ YA  IL L  +     +P    RG+L H+I+   +K+  ++  
Sbjct: 720  RIAVTRFDSLQSDPYSYYASNILGLRKLDPVDAEPTAAWRGSLIHSILENWVKEDNSR-- 777

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNIPA 887
                  +K    +  E  N       +W     +         +K  +     + V    
Sbjct: 778  ---IGRLKPRALAFLESINAHIIQKTLWLPRLLQAIDWIEGEVQKNAAEGRTILDVEREG 834

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            +  I   GI L GF DRID +  G + I DYKTG  P   + +     QL+L    ++  
Sbjct: 835  RSQIN--GIELFGFVDRIDRMGDGSLAIVDYKTGTPPSAASVKNGDMLQLALLGLLIEHN 892

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEIVTL 1000
                I   +V+   Y  + Q  K          + + K     ++    + +  I +   
Sbjct: 893  GIKDI-KGQVSAFEYWSMAQDLKKKTAGYSRSVLGSGKNALLPEDFLNMAEERFIRVTND 951

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWRE 1035
              + + PF +     +K  +  +Y  L R  EWR 
Sbjct: 952  YLHNQTPFTARPHRGKK--LYDDYVQLMRFDEWRS 984


>gi|16127767|ref|NP_422331.1| hypothetical protein CC_3537 [Caulobacter crescentus CB15]
 gi|221236587|ref|YP_002519024.1| ATP-dependent nuclease subunit B [Caulobacter crescentus NA1000]
 gi|13425271|gb|AAK25499.1| hypothetical protein CC_3537 [Caulobacter crescentus CB15]
 gi|220965760|gb|ACL97116.1| ATP-dependent nuclease subunit B [Caulobacter crescentus NA1000]
          Length = 996

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 267/1050 (25%), Positives = 440/1050 (41%), Gaps = 80/1050 (7%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
             + P  ++I    PF  ++   LLN         +PL P  L   T+  PT+R  + L  
Sbjct: 10   REGPRWYSIPAHRPFVDDLARGLLNT-------LEPLGPEALPRATVLTPTRRGARALAD 62

Query: 63   EFIEITGKKSTILPIIKSLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
             F+ + G ++ +LP I+ LGD+ E E       LS  L P +S+ +R  ELARL+    +
Sbjct: 63   AFLSVGGGRALLLPQIRPLGDLDEGEPPFEPGELSLTLPPAISSRRRRFELARLVTDHGD 122

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED-LHALKNEKYGMW 180
            KL             S    P  A+ LAK L++ +D  + EE  ++D L  L        
Sbjct: 123  KL-------------SFKPGPVQALELAKALSEFLDSCQIEEVNFDDKLDGLAEGDLAQH 169

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA-GSTGSI 239
            W ++A FL+   + W+ RL  L        ++ L+RA            +++A GSTG+ 
Sbjct: 170  WQVSARFLRSVLRAWSTRLDTLGLIDVSERRVRLLRALEAQWRDNPPTEVLVAAGSTGTA 229

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L+  +A  P GA+VLPGLD  +    W  I           +    HPQ ++ +L
Sbjct: 230  PATADLLRVIAAAPKGAVVLPGLDEDLADTAWAKIK---------GSQGEQHPQGAMKRL 280

Query: 300  LDFLDIKREDVKRL-GNVSNEMYGRSMVISKSFLPPDTSDMRNTD-----ILENKIPNIQ 353
            LD   + R +V+     V +    R  +++++  P + +    +           +  + 
Sbjct: 281  LDRAGVSRAEVRAWVPEVDSRGRWRRRIVNEALRPAEATADWLSQIAALRAEAPGLDPVA 340

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
            +  +  ++I A  E E A + A+ LR +L++  + +AL+T D+ LARRV   L R+G+  
Sbjct: 341  EGLTGFSVIAARAEEEAAGACALLLREALEDPVRTAALVTPDQTLARRVMTRLQRWGVIP 400

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            D SAG PL+    + +   L   + +  + + +    KHPL          +  +     
Sbjct: 401  DSSAGAPLAAAGSAILALHLARLVEEPLNPVRLLAFAKHPLVLGEDEVPAAALLERK--- 457

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                                      +          R    +   A+ L + +L  +  
Sbjct: 458  ------------------------GLRGAAPGSADVLRARLREAPDALALAERVLVAVNH 493

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
                  +        +     +   + +             LW    G+ L +L + +I+
Sbjct: 494  AAAPYGDGALAAPARAAQALVEALESLIA---------PDRLWAGNAGECLGALMAALIQ 544

Query: 594  TGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
             G  +  A+   + DI+ RL++ ETV+        L ILG +E+RL+  D L+L GL EG
Sbjct: 545  DGEPLPDASPQAFGDILDRLVNEETVRVGGATHPRLRILGAIEARLVRADRLVLAGLEEG 604

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
            VWP+    +PFLSR M+  L L   E+ IG  AHDF  A     ++     R    P + 
Sbjct: 605  VWPQGAPIDPFLSRPMRQRLGLPPPERRIGLTAHDFAQAASAPDVVLVHCERRGGAPAVE 664

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
            SRWL RL  L      +    R     DW   LD         RP P PP+E +PR  + 
Sbjct: 665  SRWLWRLKTLAAGAGLE--LPRRDDVTDWVSALDAPGPYAPIGRPAPKPPVEDRPRKMAV 722

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            + ++ L  DPYAV+AR ILKL  +    +  +   RGT  H       +   +    E  
Sbjct: 723  TRVEALTRDPYAVWARDILKLYPLERPDEPVEARARGTAIHAAFERFAELYPDAVPAEAA 782

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMA 890
               +++         +PP      + L  + +    + E + ++ + +I V      ++ 
Sbjct: 783  SAFEKLYVDALVSAGMPPTALAREKALAREAAAWVADWERQRRTQVRRIVVEAEGKLELV 842

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            I      LT  ADRI+    G   I DYKTG  P ++       PQL+L AA L  G F 
Sbjct: 843  INGRPFTLTAKADRIEPTPDGTAHILDYKTGAAPSQKQVDTGFSPQLTLTAAILMNGGFP 902

Query: 951  QIDCRKVANLFYIRLKQKFKI-DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
             +      +L Y+R+  +    +     K    +++ + K+L+ L  ++    + ++P+ 
Sbjct: 903  DLGRPAPGDLTYVRVTGRRPAGEEQVRAKGDGESEDAARKALEGLSSLIARYDDPDEPYR 962

Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEYDI 1039
            S +          +Y HLARV EW    D 
Sbjct: 963  SRVAPQFVKEHPGDYAHLARVFEWSTSGDD 992


>gi|209965879|ref|YP_002298794.1| hypothetical protein RC1_2601 [Rhodospirillum centenum SW]
 gi|209959345|gb|ACI99981.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 1000

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 275/1045 (26%), Positives = 434/1045 (41%), Gaps = 65/1045 (6%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             + T+ P  PF   +   +L+            +PL L+ VT+ +PT RA++ LR  F+ 
Sbjct: 4    RLHTLPPELPFVDALAAGILDRI--------GADPLALSRVTVLLPTARAVRSLREAFLR 55

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
            ++  +  +LP +  LG+V  ++    L         +S                     +
Sbjct: 56   LSDGRPVLLPRLSPLGEVDADEVALSLEGLAGGAGGLSVPP----------AVSPLRRQL 105

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
            +          L  + A A  LA  LA ++D ++ E   +E L AL  + Y   W +   
Sbjct: 106  LLARLILKAEGLAATTAQAARLAAELARLLDQVQAERLSFEGLRALVPDDYAGHWQVTLT 165

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPATARL 245
            FL+I ++ W + L E   + P   + A + A A     +   GP+I AG TGSIPATA L
Sbjct: 166  FLEIVTRLWPDVLAEEGCADPAVERDARLLALARAWELRPPPGPVIAAGVTGSIPATADL 225

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            ++ VA  P GA+VLPGLD  +  A W  +               +HPQ  L  LL+ L  
Sbjct: 226  LAVVARLPQGAVVLPGLDLGMDDATWAGLD-------------ESHPQAGLKSLLERLGA 272

Query: 306  KREDVKRLGNVSN---EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
             R DV      +     +  RS V     L         T+             + V+ I
Sbjct: 273  DRRDVTPWPLPATGPLAVAPRSPVARSRLLAEALRPAETTEAWRALPALSPDALAGVSRI 332

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            +A   +EEA  IA+ +R +L+   + +AL+T DR LARRV + L R+G+ +D SAG PL+
Sbjct: 333  DAPTPQEEAGVIALMMRQALETPGRTAALVTPDRALARRVAMALRRWGVEVDDSAGRPLA 392

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             T   S L  L +        + +  L+KHPLA  G           ALE   LRG + +
Sbjct: 393  LTPVGSYLRLLADFAATPA-PVGLLALLKHPLAAGGTDPAEFRALARALERAVLRGPRPA 451

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                 L+  +      + +        +    + +     L   +               
Sbjct: 452  EGFAGLRRALEAAEPRRFDGPEERSRLAGFLLDLERRIGGLCAAM--------------- 496

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLP-NLWFEEEGKTLSSLFSKIIETGSCIK-A 600
               G   ++DW +L     + +           +W  ++G+  +    +  E        
Sbjct: 497  -ADGPRPLADWLELHGQAAELLAATAREPGALRVWAGDDGEAAARFLREAAEAARGFPDL 555

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
               ++  ++  L+ G  V+P+      L ILG +E+RL  FD  ILGGLNEG WP     
Sbjct: 556  GGADYAALVEVLMAGRAVRPRYGLHPRLHILGLMEARLQQFDLTILGGLNEGTWPPAPPA 615

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
            +P++SR M++   L   E+ IGQ AHDF  A G   L+ TRS R +  PT+ SRWL RL 
Sbjct: 616  DPWMSRPMRTAFGLPAPERRIGQTAHDFAQAAGAAELVLTRSERVDGTPTVPSRWLLRLD 675

Query: 721  VLGGTD------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
             +                +    +L     LD+  +      P P PP+ A+PR  S ++
Sbjct: 676  TVLEAAGLSLAGPLRLPGRDAGHWLALQAALDWPERVRPCPPPAPAPPVAARPRRLSVTQ 735

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
            ++  + DPYA+YAR +LKL  +     DP   +RG   H  +   ++       P+    
Sbjct: 736  VETWMRDPYAIYARHVLKLQALEPVDADPGAAERGQFIHKALDAFVRTYPRTLPPDALER 795

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES- 893
            +       F      P I   W   F +I+  FL  E + +  +  +   +   + ++  
Sbjct: 796  LLDAGREAFGPLLEQPAIRAFWWPRFERIAGWFLALEAERRGQVAVLATEVKGTLRLDGP 855

Query: 894  -IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
                 L+  ADRID L  G + + DYKTG  P     +    PQL LEA   + G F  +
Sbjct: 856  AGPFVLSCVADRIDRLPDGALALVDYKTGTPPTARDIELGFAPQLPLEALIAQEGGFEGL 915

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
                V  L + +L        +   K     ++L E++   L  ++ L  +   P+ S  
Sbjct: 916  APAPVGELAFWKLTGGEPAGEVRPVKG--DLEDLVEQARAGLSRLIALFDDPATPYRSQP 973

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037
            R        S+Y HLAR+AEW    
Sbjct: 974  RPGRAPRF-SDYGHLARIAEWSAGG 997


>gi|329113821|ref|ZP_08242592.1| Hypothetical protein APO_0595 [Acetobacter pomorum DM001]
 gi|326696831|gb|EGE48501.1| Hypothetical protein APO_0595 [Acetobacter pomorum DM001]
          Length = 1029

 Score =  496 bits (1276), Expect = e-137,   Method: Composition-based stats.
 Identities = 262/1068 (24%), Positives = 454/1068 (42%), Gaps = 84/1068 (7%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             + TI    PF  ++         +        +   +    I +P +RA + L   F+ 
Sbjct: 2    KLATIPAHLPFLDQLA--------IRWIESANHDVEAIGEGIIVLPGRRAARALTEAFLR 53

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADL----LLSYNLNPPVSNIQRLLELARLILIWRNK 122
                +S +LP I  +G + E +          L+ +L P V+++ RL  LARL+L     
Sbjct: 54   HMDGQSVLLPRIVPIGALDEAELGLSAGIGGELALDLPPAVASMTRLAVLARLVLQ---- 109

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWW 181
                      +       +   A  LAK LAD++D  E       E L     E +   W
Sbjct: 110  ---------ADKAFGTRPTLDQAWPLAKALADLMDEAEWSGVNLAERLPEAVQENFAEHW 160

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK----GPIIIAGSTG 237
             +   FL+I ++ W E L E    +PV  Q+AL+ A+A+   K  +     PI  AG T 
Sbjct: 161  QIILRFLEIVTQAWPEWLRENGVMNPVARQVALLEAQADLWRKLAQQGDSTPIWAAGFTH 220

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
             +  T +++  V   P G +VLPGLD  +    + ++ +             +HPQ  L+
Sbjct: 221  VMQPTVKVLQAVLECPAGKVVLPGLDMMMAEETFLSLPD-------------SHPQAGLS 267

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
             LL  L+I R  V+          GR+ ++++  LP         + L++          
Sbjct: 268  ALLKNLEITRNKVQIWEGTGK-GAGRAAILARVLLPA--------EALDDWSHPGGAELE 318

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            +V  ++A +++EEA++I++ +R ++++   + AL+T DR LA RV  EL R+G+  D SA
Sbjct: 319  NVYRLDAADQQEEAVAISMIMREAIEKPMHRVALVTPDRVLAARVATELARWGVLADDSA 378

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L  T  + +L  +   +      +++ +++KHPL   GF           LE   LR
Sbjct: 379  GSSLVDTPAAVLLRLVAQMVDSRFSPVSLLSVLKHPLVACGFSSGVCRATARLLERAILR 438

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL--LVDHILQCITPLV 535
            G         L  +V + +                ++       L   +  +  C+ P++
Sbjct: 439  GPAPPPGFAALCRVVNNALENLNERAKAKLEGGITADRPFGPVALSVFMQRLAFCLEPVL 498

Query: 536  TYKTNKNST---------CGNLSISDWTKLTVTCLQNV-CLDEHRKLPNLWFEEEGKTLS 585
             ++ +                  + D     +  ++ +   DE      LW  EEG  L+
Sbjct: 499  GWELDAVEASVQTAQDLEQHCAPVPDLLAALIATVERLVATDEESASERLWRGEEGNMLA 558

Query: 586  SLFSKIIETGSCIKANAIEWID-IITRLIDGETVKPKIEK-----SSTLFILGTLESRLL 639
            S  ++++     +       +D ++T ++  E V  +           + I G  ESRL 
Sbjct: 559  SQLTELMLASEVLPPQPPVVLDGLLTAVLAPERVAMRRGGDPKSLHPRVLIWGLFESRLQ 618

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLI 698
              +T+ILGGL+EGVWP      P++SR M+  + L + E+ +GQAAHDF  +      +I
Sbjct: 619  TAETVILGGLSEGVWPPVVDAGPWMSRPMRQRMGLPSPEQAVGQAAHDFFASAAAADTVI 678

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
             + + R    P + +RWL RL                  +L+   +            P+
Sbjct: 679  LSSARRREGAPVVPARWLTRLDAFLAGRNGYIPNHPALVWLNKLDQ--PLGPATPVAPPQ 736

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
            P PP+  +PR  S +EI+  I DPYA+YA+ IL+L+ +P  ++  D +D G + H  +  
Sbjct: 737  PMPPVALRPRRLSVTEIETWIRDPYAIYAKHILRLEVLPELEEAADASDYGMIVHKALER 796

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
             +K             +  +  +  ++  L P +   W     +I+   ++ EEK +S  
Sbjct: 797  WVKAYAVAWPENAEKKLCDLFSASLQEHVLRPALRAWWAPRLTRIARWVVQAEEKRRSEH 856

Query: 879  ---EKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
                 I   I  +++I         + G ADRI+L   G V + DYKTG  P  +     
Sbjct: 857  GVPRAILTEIRGRVSIMDAPGGKFDIVGRADRIELNADGHVIVQDYKTGTLPSAKDVWAG 916

Query: 933  IDPQLSLEAAALKAGSFSQID--CRKVANLFYIRLKQKFKIDC--ITNDKKKYSADELSE 988
              PQL LEAA +  G F ++    R++++L Y RL          +   ++  S  +L+E
Sbjct: 917  WSPQLPLEAAMIIRGGFKEVPEHSREISDLIYWRLTGGADPGEEVVVKTREALSLTDLAE 976

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREE 1036
            ++ +NL+  V      +QP++SH     +     +Y  LARV EW   
Sbjct: 977  QTWENLLLRVAAYDQPDQPYLSHPHPGREPRFA-DYARLARVPEWNSA 1023


>gi|295687599|ref|YP_003591292.1| double-strand break repair protein Addb [Caulobacter segnis ATCC
            21756]
 gi|295429502|gb|ADG08674.1| double-strand break repair protein AddB [Caulobacter segnis ATCC
            21756]
          Length = 995

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 274/1047 (26%), Positives = 441/1047 (42%), Gaps = 81/1047 (7%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            P  F+I    PF  ++   LLN         +PL P  L   T+  PT+R  + L   F+
Sbjct: 13   PRWFSIPAHRPFVDDLARGLLN-------ALEPLGPEALPRATVLTPTRRGARALADAFL 65

Query: 66   EITGKKSTILPIIKSLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
             + G ++ +LP I+ LGD+ E E       L+ +L P +++ +R  ELARL++   + L 
Sbjct: 66   AVGGGRALLLPQIRPLGDLDEGEPPFEPGELAIDLPPAIASRRRRFELARLVVDHGDLL- 124

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED-LHALKNEKYGMWWLL 183
                        S    P   + LAK L+D +D  + EE ++ED L  L        W +
Sbjct: 125  ------------SFKPGPVQTLELAKALSDFLDSCQIEEIQFEDRLDGLAEGDLAQHWQV 172

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA-GSTGSIPAT 242
            +A FLK   + W ERL  L        ++ L+RA  +   +     +++A GSTG+ PAT
Sbjct: 173  SARFLKAVLRAWPERLKHLGLIDVSERRVRLLRALEKQWSENPPTEVLVAAGSTGTAPAT 232

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
            A L+  VA  P GA+VLPGLD  +  + W+ I           +    HPQ ++ +LLD 
Sbjct: 233  ADLLRVVAAAPKGAVVLPGLDEDLADSAWDRIE---------GSQGEQHPQGAMKRLLDR 283

Query: 303  LDIKREDVKRL-GNVSNEMYGRSMVISKSFLPPDTSDMRNTD-----ILENKIPNIQKCF 356
              + R DV+    +  +    R  +++++  P + +                +  I +  
Sbjct: 284  AGVARGDVRAWVPDADSRGRWRRRIVNEALRPAEATADWLAQIASLRAEAPDLDPIAEGL 343

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
               ++I A  E E A + A+ LR +L+   K +AL+T D+ LARRV   L R+G+  D S
Sbjct: 344  MGFSVIAARAEEEAAGACALLLREALETPDKTAALVTPDQTLARRVMTRLQRWGVIPDSS 403

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
            AG PL+    + +       + +  + + +  + KHPL          +  +        
Sbjct: 404  AGAPLAAAGSAILALHFARLVEEPLNPVRLLAVAKHPLVLGEDEAPAAAVLERKGL---- 459

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                       L++ + D          V       +    +            +  L  
Sbjct: 460  -RGAAPGSAEGLRARLKDTPEALALCDRVLAAVDHAASPYADGFARPCQAAKALVEALEG 518

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                                                  LW    G+ L +L + +I+ G 
Sbjct: 519  LIAPAR--------------------------------LWAGGAGECLGALMAALIQDGE 546

Query: 597  CIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
             +  A+   + DI+ RL++ ETV+        L ILG +E+RL+  D L+L GL EGVWP
Sbjct: 547  PLPDASPQAFADILDRLVNEETVRVGGATHPRLRILGAIEARLVRADRLVLAGLEEGVWP 606

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
            +    +PFLSR M+S L L   E+ +G  AHDF  A     ++     R    P + SRW
Sbjct: 607  QGAPIDPFLSRPMRSRLGLPPPERRVGLTAHDFAQAASAPDVVLVHCERRGGAPAVESRW 666

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            L RL  L           R    LDW R LD        KRP+P PP+E +PR  + + I
Sbjct: 667  LWRLKTLAAGAGLA--LPRRDDVLDWVRALDAPEPYSPIKRPEPRPPVEDRPRKMAVTRI 724

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            + L  DPYAV+AR ILKL  +    +  +   RGT  H    +  +   +    +   + 
Sbjct: 725  EALTRDPYAVWARDILKLYPLERPDEPVEARARGTAIHAAFEKFAETYPDSVPADAAAVF 784

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAIES 893
            ++          +PP      R L  + +    + E + ++   KI V      +++I  
Sbjct: 785  ERFYIEALVGAGMPPTALTRERALAREAAQWVADWERQRRAGARKIVVEAEGKLELSING 844

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
                LT  ADRI+  + G   I DYKTG  P ++       PQL+L AA L  G F  + 
Sbjct: 845  RAFTLTAKADRIEPTQDGTAHILDYKTGAAPSQKQVDTGFSPQLTLTAAILMNGGFPDLG 904

Query: 954  CRKVANLFYIRLKQKFKI-DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
                  L Y+R+  +    +          ++E + K++  L++++    + ++P+ S +
Sbjct: 905  SPAPGELTYVRVTGRRPAGEEQVRALANGESEEAARKAMDGLVKLIARYDDPDEPYRSRV 964

Query: 1013 RLSEKSNIQSEYDHLARVAEWREEYDI 1039
                      +Y HLARV EW    D 
Sbjct: 965  APQFVKEHPGDYAHLARVFEWSTSGDD 991


>gi|56551995|ref|YP_162834.1| double-strand break repair protein AddB [Zymomonas mobilis subsp.
            mobilis ZM4]
 gi|56543569|gb|AAV89723.1| double-strand break repair protein AddB [Zymomonas mobilis subsp.
            mobilis ZM4]
          Length = 993

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 241/1055 (22%), Positives = 415/1055 (39%), Gaps = 96/1055 (9%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63
            +K  +FTI     F   ++  L+             +P+ LA   I +P  R+I+ +   
Sbjct: 3    EKSRLFTIPFHRSFADALVEGLIKRY---------DDPMTLAQGLILLPNNRSIRAITEA 53

Query: 64   FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIW 119
            F+  +     +LP +  +GD + +      L   +    L P +  ++R   L RL+   
Sbjct: 54   FVRQSSSG-LLLPRMVPVGDPLLDDRLGAFLDPVDMIDPLPPAIPPLERHFRLTRLVKKV 112

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL----KNE 175
              K    I                 A  LA+ LA  +D +   E   E L  L      E
Sbjct: 113  MQKQGRTIA-------------VPEAHRLAEELALTLDQLMAAEIAPEQLTQLIDPLAEE 159

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--GPIIIA 233
            +    W  +   L+     W E L +         +  L+   A+          PII A
Sbjct: 160  ELARHWQASLKLLECIITEWPEELKKTGQIESQERRNRLLDRLADRWQTQPPSEKPIIAA 219

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS--NTTYSTH 291
            G+    P +ARL+  ++   +G +VLPGLD ++    W  +     +  +     +  +H
Sbjct: 220  GAITGSPVSARLLRVISEMEDGLVVLPGLDNNMSDEEWQLLGPHERDPDTGIKQPSLESH 279

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYG-RSMVISKSFLPPDTSDMRNTDILENKIP 350
            PQ+ L  LLD + + R++V       N     R   I     P   +D          +P
Sbjct: 280  PQFQLKLLLDRMGVDRKEVIEWDPPKNYHPDNREQAIRHVMAPARYTDRWR------SLP 333

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
              ++ F ++++IE  +  EEA  IA+ALR +++E  + +AL+T DR LA RV   L RFG
Sbjct: 334  EKERAFPNLSVIETAHPEEEAQVIALALREAVEEKGQTAALVTPDRALAIRVSALLKRFG 393

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            I+ D SAG PLS T    +L  L++        ++   + KHPL  FG           +
Sbjct: 394  IDADDSAGRPLSLTPPGLLLLDLVSLAADHFSAVSFLAIAKHPLVAFGEERDLWRDHIRS 453

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
            L+++  RG      +  + + + + +  QK +  +  W  +                   
Sbjct: 454  LDMIL-RGPLLRNGLAGITAKIKEAVDNQKADPELLAWWEKTKTP--------------- 497

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                  ++         L ++   K+       +          +W E  G   + L ++
Sbjct: 498  ------FQALDQQYQSVLPLTKIVKILRETANQIAG------EKIWAEAAGHLAADLIAE 545

Query: 591  I--IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            I  +           ++  ++ +L+D + V+P       +FI G +E+RL + D +I   
Sbjct: 546  IESLAADHNEDMRFSDFAHVLRQLMDKQAVRPMTGGHPRIFIWGLIEARLQHADLMIAAS 605

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
            LNE VWP     +P+L+  ++S+L L   E  IG AAHDF    G + ++ TR+ R+   
Sbjct: 606  LNETVWPPIKEADPWLAPRIRSELGLPGLELRIGIAAHDFSSVLGAKKILLTRARRDARA 665

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
            PT+ SR+  RL  +                  W R+LD         RP P PP+  +P+
Sbjct: 666  PTMPSRFWLRLEAMAANLH------HADNLPYWARQLDEPQGFRPVTRPAPNPPVLDRPK 719

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              + +    L +DPY+ YA  IL L  +     +P    RG+L H+I+   +K+  ++  
Sbjct: 720  RIAVTRFDSLQSDPYSYYASNILGLRKLDPVDAEPTAAWRGSLIHSILENWVKEDNSRIG 779

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNIPA 887
                  +     +  E  N       +W     +      +  +K  +     + V    
Sbjct: 780  KLKPRAL-----AFLESINAHIIQKTLWLPRLLQAIDWIEDEVQKNAAEGRTILDVEREG 834

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            +  I   GI L GF DRID +  G + I DYKTG  P     +     QL+L    ++  
Sbjct: 835  RSQIN--GIELFGFVDRIDRMGDGSLAIVDYKTGTPPSAAAVRHGDMLQLALLGLLIEHN 892

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEIVTL 1000
                I   +V+   Y  + Q  K          + + K     ++    + +  I +   
Sbjct: 893  GIKDI-KGQVSAFEYWSMAQDLKKKTAGYSRSVLGSGKNALLPEDFLNMAEERFIRVTND 951

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWRE 1035
              + + PF +     +K  +  +Y  L R  EWR 
Sbjct: 952  YLHNQTPFTARPHRGKK--LYDDYVQLMRFDEWRS 984


>gi|220921600|ref|YP_002496901.1| double-strand break repair protein AddB [Methylobacterium nodulans
            ORS 2060]
 gi|219946206|gb|ACL56598.1| double-strand break repair protein AddB [Methylobacterium nodulans
            ORS 2060]
          Length = 1037

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 303/1049 (28%), Positives = 490/1049 (46%), Gaps = 44/1049 (4%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             +FTI P  PF   +  ALL+GTL  +      +PL LA+VT+Y+PT+RA + L +   E
Sbjct: 5    RIFTIPPGVPFLATLAEALLDGTLAGDV---GRDPLGLATVTLYLPTRRATRALAAILAE 61

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-----LNPPVSNIQRLLELARLILIWRN 121
                 + +LP +  LG+  E +               L+PP+  ++R L LARL+  W  
Sbjct: 62   RC-GPAALLPRMVPLGEADEAELDLAAAPFGERQEAVLHPPIPPLERRLILARLVQAWAA 120

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
             +   +  +  E P  +P SPA+A+ LA +L  ++D +  E   W+ +      +Y  ++
Sbjct: 121  SIDRQLLPMDAEVPFRVPSSPADAVGLAADLEGLMDALTVEGLPWDQIGQAVEAEYSRYF 180

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIP 240
             L  DF++IA+++W   L E   S PV    AL+ AEA  L +     PI++AGSTGS+P
Sbjct: 181  SLTLDFVRIAAEHWPAILAERGVSDPVARGRALVLAEAARLRRERPADPIVVAGSTGSVP 240

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
            ATA L++ +A  P GA+VLPGLD  +  A W  I        +       HPQ  + +LL
Sbjct: 241  ATAALIAAIAAMPRGAVVLPGLDLALDEAGWAAID-------TGEAIAHGHPQAVMHRLL 293

Query: 301  D--FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
                LD  R  V+ LG  S E   R+ ++S++  P +T+D        +++   +   + 
Sbjct: 294  GPGALDCGRAAVRPLGRPSPEAEARAALLSQALRPAETTDAWADLDPGHRVSLARAGGAG 353

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
            + ++EA +EREEA+++A ALR +L+   + +ALIT DR LARRV  EL R+ I  D +AG
Sbjct: 354  LGIVEAADEREEALAVAAALRETLERPGRTAALITPDRTLARRVAAELKRWNIVADDTAG 413

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
             PL+ +    +     +    +     +  L+ HPLA+ G     + RA +ALE+  LRG
Sbjct: 414  QPLALSPAGRLARLAADVAALVAKPDRVLALLAHPLARLGCSRAEVVRAASALEIGVLRG 473

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                     L   +  R+A  +   H P  + RL+E D + A  LVD +          +
Sbjct: 474  PAPGKGFAGLAEAL--RVARTEERPHDPRARRRLTEADWDAAADLVDRLSVAFRDFFADE 531

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
             +         +    +   T    +          +  E     L  LF  +    + +
Sbjct: 532  DDA-----VRDLVGLARAHRTTCDLLLDGPD----AVEDEASVAVLDGLFDDLALAETGL 582

Query: 599  KA-NAIEWIDIITRLIDGETVKPKIE-KSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             A    ++    T L     V  +       L ILG LE+RLL+ D +++ GL+EGVWP 
Sbjct: 583  LAGRFSDYPAFFTALARERVVAERRALPHPRLRILGLLEARLLSVDRVVVAGLDEGVWPP 642

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                + FL+R M+  + L   E+ +GQ AHDF  A G    + TR+ +    P + SR+L
Sbjct: 643  KAETDAFLNRPMRGAVGLSPPERRLGQTAHDFVQALGCPDAVITRAHKREGSPMVPSRFL 702

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH--YKRPKPFPPLEAQPRTYSFSE 774
            QRL    G + +    + G+ +      LD  T+       RP P P     PR+ S +E
Sbjct: 703  QRLRAFMGEEAWSARVRAGERFRALAAALDRGTEPLPPRLARPAPKPDPALFPRSLSVTE 762

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
            ++ L+ DPYA++AR +L LD +      P  +DRGT+ H+++    ++       +    
Sbjct: 763  VETLVRDPYAIFARHVLGLDPLEPVAVQPSASDRGTIVHDVLGGFAQRFPEALPADPLTP 822

Query: 835  MKQIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
            +  +  + F    +  P +   W   F +++ +FL  E + +  + ++      +  I  
Sbjct: 823  LLDLAVNAFAPIADAYPELYAEWWPRFERMAGAFLAWEAERRPGLARVHAETFGRWRIPI 882

Query: 894  IG---IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
                   L   ADRI++ + G   I D+KTG  P  +       PQL+LEAA L+AG F 
Sbjct: 883  GPAEDFTLRARADRIEVTRGGGHVIVDFKTGQPPSAKEVFAGFAPQLTLEAAMLRAGGFR 942

Query: 951  QID-CRKVANLFYIRLKQK----FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
             +     V +L Y+R          +       ++ S  +L ++  +    ++     GE
Sbjct: 943  DLGAAAAVPDLLYVRAGGGKVPLDPVPLKPPRGEERSVADLVDEHARRFQALIARFLQGE 1002

Query: 1006 QPFISHLRLSEKSNIQSEYDHLARVAEWR 1034
              F+S     + +   S YDHLARV EW 
Sbjct: 1003 AAFLSRP-YPKYARAYSAYDHLARVKEWS 1030


>gi|154247227|ref|YP_001418185.1| double-strand break repair protein AddB [Xanthobacter autotrophicus
            Py2]
 gi|154161312|gb|ABS68528.1| Double-strand break repair protein AddB [Xanthobacter autotrophicus
            Py2]
          Length = 1015

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 308/1039 (29%), Positives = 484/1039 (46%), Gaps = 34/1039 (3%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            P V TI  S+PF   +  ALL+GTLVE F     +PL LA  T+++PT+RA +      +
Sbjct: 2    PRVLTIPSSAPFLPTLATALLDGTLVEGFAPR-ADPLALAGATVFLPTRRAGRLFAEALL 60

Query: 66   EITGKKSTILPIIKSLGDVVEEKFTADLLLS-YNLNPPVSNIQRLLELARLILIWRNKLP 124
            + +G    +LP I  LGDV E+                ++ + R L LARL+  WR+ L 
Sbjct: 61   QASGGAVLLLPKIVPLGDVDEDALAFSEDAPVLAAPHAIAPVHRRLVLARLVAHWRDTLA 120

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184
                        ++    A    LA  L  + D + T     + L  L  E+   ++ + 
Sbjct: 121  ------KAAGREAVAAGTAATFALADALGALFDDLTTAGLTVDGLDGLVPEELDRYFRVG 174

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG--TKGPIIIAGSTGSIPAT 242
             DF++IA + +T+ L       P   + AL+ AEA  L       GP+I AGSTGS+PAT
Sbjct: 175  LDFVRIARRAFTDYLDIAGLVEPAARRDALVDAEARRLAALGSDAGPVIAAGSTGSMPAT 234

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
            ARL++ +A  P GA+VLPGLD  +  A +  IT+              HPQY LA+LL  
Sbjct: 235  ARLLAAIAALPKGAVVLPGLDQDLDAASFARITDG-------RDAAPDHPQYGLARLLPR 287

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            L + R DV  L   +   +GR  ++S+     +TSD+  +         +    + ++++
Sbjct: 288  LGVARGDV--LSLAAPTAFGRERLMSEVMRQAETSDLWASVSDRLPPAALGTAMAGISVV 345

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            EAD+ R EA++IA+ LR SL+   + +AL+T DR+LARRV  E+ RFG+ +D SAG PL+
Sbjct: 346  EADDPRAEALAIALLLRDSLEREGETAALVTPDRDLARRVAAEMARFGVALDDSAGTPLA 405

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             +    +   L+ A  +    + +  L+ HPLA+FG   +  + A  ALELVALRG +  
Sbjct: 406  DSPAGRLAGLLVMAAAEDLAPVPLFALLTHPLAQFGLAPEAKADAVAALELVALRGPRPR 465

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
              I  L   +    A  +++      + R+ E     A  LVD + + + P++T      
Sbjct: 466  AGIGGLMDAI---AAFDRDDHRGADPRRRMGEGALNRARDLVDRLDRALGPMLTLGAQ-- 520

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
               G   +S                      +       +T  +L       G     + 
Sbjct: 521  --RGAAPLSALVAAHRAAWVGTAGPLDIDAEDAAEAALARTFETLDG---AAGDGPALDL 575

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
              + D    L     V+P+ E  + + ILG LE+RL++ D ++LG L EG WP+    +P
Sbjct: 576  SAYADAAGALFADAMVRPRAEPHARIRILGPLEARLIHVDRMVLGALIEGSWPRIAETDP 635

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
            +LSR M+ DL L   E+ IG +AHDF    G   ++ T + +     ++ SR++QRL  +
Sbjct: 636  WLSRPMRGDLGLDLPERRIGLSAHDFVQGFGAAEVVLTFAAKVGGTQSVPSRFVQRLKTV 695

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
             G   +   + RG  ++   R+LD     P   RP P PPL  +PR  S +E++  + DP
Sbjct: 696  AGEAEWTAARTRGARWVQAARRLDDAPAVPRATRPAPAPPLALRPRRLSVTEVETFLRDP 755

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
            Y++YAR +L L  +          +RG+  H  I    +    K  P+    + +     
Sbjct: 756  YSIYARHVLGLLPLDPLDAALGGAERGSALHEAIGRFTQDHPCKLPPDALERLLEEGRRA 815

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLTG 900
            F      P    +W   F + +   +  E + +  ++ +       + I   G    LTG
Sbjct: 816  FAPLKAFPAEHALWWARFERAAGFLVAFERERRGHLDHVVAEASGSLEIPLGGGAFRLTG 875

Query: 901  FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
             ADRI++ + G ++I DYKTG  P        + PQL LEAA  + G+F  +    VA+L
Sbjct: 876  RADRIEVRRDGLLNILDYKTGTAPSARQVAS-LSPQLPLEAAMARRGAFPDVPAVDVADL 934

Query: 961  FYIRLKQKFKIDCITNDK-KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
             Y+ LK           + K     +L+E +L  L  ++   +N  Q + S L   + S 
Sbjct: 935  LYVELKGGAAGGEEKPIRLKDSDTMDLAETALAGLESLLMAFENEAQGYRS-LAAPQWSG 993

Query: 1020 IQSEYDHLARVAEWREEYD 1038
                YDHLARV EW    +
Sbjct: 994  TFGTYDHLARVREWALSGE 1012


>gi|167648807|ref|YP_001686470.1| double-strand break repair protein AddB [Caulobacter sp. K31]
 gi|167351237|gb|ABZ73972.1| double-strand break repair protein AddB [Caulobacter sp. K31]
          Length = 999

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 285/1048 (27%), Positives = 437/1048 (41%), Gaps = 84/1048 (8%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            P  F+I    PF  ++   LL+          PL P  L + T+  PT+R  + L   F+
Sbjct: 17   PRWFSIPAHRPFVEDLARGLLS-------ALAPLGPEALPAATVLTPTRRGARALADAFV 69

Query: 66   EITGKKSTILPIIKSLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
               G K+ +LP I+ LGD+ E E       LS +L P VS+ +R  ELARL+      L 
Sbjct: 70   AAGGGKALLLPQIRPLGDLDEGEPPFEPGELSLDLPPAVSSRRRRFELARLVAEHAPLL- 128

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED--LHALKNEKYGMWWL 182
                        S       A+ +AK LAD +D  + EE   +D  L +L        W 
Sbjct: 129  ------------SFQPQAGQALEMAKALADFLDSCQIEEVVADDGRLDSLAEGDLAQHWQ 176

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPA 241
            ++A FLK     W +RL EL        ++ L+ A ++       +G ++ AGSTG+ PA
Sbjct: 177  VSARFLKAVLTAWPKRLDELGLIDVSDRRVRLLNALSDQWEQNPPQGVLVAAGSTGTAPA 236

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            TARL+  +AN P GA+VLPGLD  +    W+ I                HPQ ++ +LLD
Sbjct: 237  TARLLGVIANLPQGAVVLPGLDDGLADDAWDKIA---------GVQGEQHPQGAMKRLLD 287

Query: 302  FLDIKREDVK-RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE-----NKIPNIQKC 355
                 R DV+       +    R  +I+++  P + +      I         +  I + 
Sbjct: 288  GAGATRADVRPWWPEADSRGRWRRRLINEALRPAEATADWLAQIDRLREEAPGLDPIAEG 347

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
               ++L+    E E A++ A+ LR +L+     +AL+T D+ LARRV   L R+G+  D 
Sbjct: 348  LKGLSLVSTRTEEEAAVACALLLREALETEGLTAALVTPDQELARRVGARLMRWGVIPDS 407

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            SAG PL+ +  + +   +        D + +  + KHPL +           K+      
Sbjct: 408  SAGAPLAASPAAILAQHVAALAVDPLDPVRLLAVAKHPLLRADAVAARDLELKSLRGPAP 467

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                +    + D    +                              LV+ +     P  
Sbjct: 468  RDAGQLLGKLKDHPDALALAERVLAAARQAAAPYVDDQAPPSVATRALVESLEALADP-- 525

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                                                  +LW    G+ L+ L S +I  G
Sbjct: 526  -------------------------------------ADLWAGSAGECLAGLLSSLITDG 548

Query: 596  SCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
              +  A+A+ + D++ RL++ ET++        L I G +E+R++  D LIL GL EG+W
Sbjct: 549  VVLPPASALGFADLLDRLVNEETLRVGGATHPRLRIFGAIEARMVRADRLILAGLEEGIW 608

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
            PKN   +PFLSR M++ LNL   E+ IG  AHDF  A     +I   S R    P + SR
Sbjct: 609  PKNAPIDPFLSRPMRAKLNLPPPERRIGLTAHDFAQAACAPDVILVHSERRGGAPAVESR 668

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            WL RL  L         ++     L W R LD        KRP P PP+  +PR  + + 
Sbjct: 669  WLWRLKTLARGAGLRLTER--PDVLAWVRDLDAAGLYDPIKRPAPTPPVADRPRKMAVTR 726

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
            ++ L  DPYAV+AR ILKL  +    +  +   RGT  H        +           +
Sbjct: 727  VEALTRDPYAVWARDILKLYPLDRPNEPVEARARGTAIHAAFETFALQHPGPVPANAAEI 786

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA--IE 892
               +  S      +PP      R L  + +    + E + ++  E+I V     +   I 
Sbjct: 787  FAGLYLSELVAAGMPPAALARERALAREAALWVADLETRRRAGAERIVVEAAGSLTFDIG 846

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
                 +T  ADRI+    G   I DYKTG  P K+  +    PQL+L AA L+ G F  I
Sbjct: 847  GRPFTVTAKADRIEPTADGMAHILDYKTGAAPSKKQVETGFSPQLTLTAAILREGGFPDI 906

Query: 953  DCRKVANLFYIRLKQKFKID-CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
              R+  +L Y+R+  +               A E + K+L  L E++    + +QP++S 
Sbjct: 907  GPREPGDLTYLRVTGRKPAGVEEVRAAAGADAQEAAIKALNGLRELIERYDDPKQPYLSR 966

Query: 1012 LRLSEKSNIQSEYDHLARVAEWREEYDI 1039
            +      +   +Y HLARV EW    D 
Sbjct: 967  VAPQFVHDHVGDYGHLARVFEWSTSGDD 994


>gi|170738833|ref|YP_001767488.1| double-strand break repair protein AddB [Methylobacterium sp. 4-46]
 gi|168193107|gb|ACA15054.1| double-strand break repair protein AddB [Methylobacterium sp. 4-46]
          Length = 1040

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 299/1046 (28%), Positives = 471/1046 (45%), Gaps = 35/1046 (3%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             +FTI P +PF   +  ALL+GTLV         PL LA+VT+++PT+RA + L +E + 
Sbjct: 5    RIFTIPPGAPFLATLADALLDGTLV---GPVAQGPLGLAAVTLFLPTRRATRALAAE-LA 60

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN-----PPVSNIQRLLELARLILIWRN 121
                 + +LP +  LG+  E +     L           PP+  ++R L LARL+  W  
Sbjct: 61   ARCGPAVLLPRMTPLGEADEAELDLAALAPGECPEAVAHPPIPALERRLILARLVQAWAA 120

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
             +   +  +  E P  +P SPA+A+ LA +L  ++D +  E   W+++      +Y  ++
Sbjct: 121  GIDRRLLPMGEEVPFRVPSSPADAVGLAADLEGLMDALTVEGLPWDEIGRAVEAEYSQYF 180

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIP 240
             L  DF++IA+++W   L E   S PV    AL+ AEA  L +     PI++AGSTGSIP
Sbjct: 181  SLTLDFVRIAAEHWPAILAERGVSDPVARGRALVLAEAARLRRERPADPIVVAGSTGSIP 240

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
            ATA L+  +A  P GA+VLPGLD  +    W  I        +       HPQ  L +LL
Sbjct: 241  ATAALIGAIAAMPRGAVVLPGLDLALDEEGWAAIE-------TGEAVAHGHPQAILHRLL 293

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
              LD  R  V+ LG        R+ ++S++  P +T+D         +    +   + +A
Sbjct: 294  RGLDCPRAAVRPLGAPGPAARARAELLSQALRPAETTDAWADLDPGAREALARAGGAGLA 353

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            L+EA +EREEA++IA+ALR +L+    ++ALIT DR LARRV  EL R+ I  + +AG P
Sbjct: 354  LVEAADEREEALAIAVALREALERPDCRAALITPDRGLARRVAAELGRWEIVAEDTAGQP 413

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L+ +L   +     +          +  L+ HP+ + G     L RA  ALE+  LRG  
Sbjct: 414  LALSLAGRLARLATDVAALDAKPERVLALLAHPMVRLGLARPALERAAAALEIGVLRGPA 473

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
             +     L   +  R+A      H P    RL++ D E A  LV  + +           
Sbjct: 474  PAKGFAGLAEAL--RVARGGERPHAPRPVRRLTQADWEAAADLVARLDRAFRDFAPRDFA 531

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
             +   G   +    +        +                           +     ++ 
Sbjct: 532  PDQEEGVRDLVALAQAHRETCDLLLDGPDAPQDEPSVAVLDGLFD---DLALAQAGMLEG 588

Query: 601  NAIEWIDIITRLIDGETVKPKIE-KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
               ++    T L     V  + E     L ILG LE+RLL  D ++LGGL+EGVWP    
Sbjct: 589  RFSDYPAFFTALARERVVSARAERPHPRLRILGLLEARLLRVDRVVLGGLDEGVWPPKAE 648

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             + FL+R M++ + L + E+ +GQ AHD   A G    + TR+ +    PT+ SR+LQRL
Sbjct: 649  TDAFLNRPMRAAVGLSSPERRLGQTAHDLVQALGCPDAVITRAHKREGSPTVPSRFLQRL 708

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--YSFSEIKQ 777
                G   +      G         LD  T+    +  +P P  +        S +E++ 
Sbjct: 709  RAFMGEAAWSGCLAAGGRLRALAASLDRGTEPLPPRPARPAPRPDPALFPRALSVTEVET 768

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L+ DPY ++AR +L LD +      P  +DRGT+ H+++    ++       +    +  
Sbjct: 769  LVRDPYGIFARHVLGLDPLEPVAVQPSASDRGTIVHDVLGGFAQRFPEALPADPRLPLYD 828

Query: 838  IIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG- 895
            +  + F    +  P +   W   F +++ SFL  E + +  + ++   I  +  I     
Sbjct: 829  LAVNAFAPIADAYPELYAEWWPRFERMAASFLAWEVERRPGLRRVHAEISGRWRIPIGPA 888

Query: 896  --IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
                L   ADRI+  + G   I D+KTG  P          PQL+LEAA L+AG F  + 
Sbjct: 889  EDFTLRARADRIEARRDGGHVIVDFKTGQPPSAREVFAGFAPQLTLEAAMLQAGGFRDLG 948

Query: 954  CRKVA-NLFYIRLKQK----FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
                A  L Y+R          +       +  S +EL ++  +    +V     GE  +
Sbjct: 949  PGTGAPELLYVRASGGKVPLDPVPLKPPRGEARSVEELIDEHARRFQGLVARFLRGEAAY 1008

Query: 1009 ISHLRLSEKSNIQSEYDHLARVAEWR 1034
            +S     + +   S YDHLARV EW 
Sbjct: 1009 LSRP-YPKYARAFSPYDHLARVKEWS 1033


>gi|85708410|ref|ZP_01039476.1| helicase [Erythrobacter sp. NAP1]
 gi|85689944|gb|EAQ29947.1| helicase [Erythrobacter sp. NAP1]
          Length = 1012

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 259/1062 (24%), Positives = 421/1062 (39%), Gaps = 104/1062 (9%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            KP V++IA    F   ++  L+     E F         LA VT+ VP+ RA + +   F
Sbjct: 10   KPKVYSIAAHRGFADALVAGLVPRYEEEGFG--------LARVTLLVPSSRAARTMSEAF 61

Query: 65   IEITG---KKSTILPIIKSLGDVVEEKFTADLLLSY---NLNPPVSNIQRLLELARLILI 118
            I   G   +   ++P + ++GD+  ++    LL      ++ P V   +RLLELA+L+  
Sbjct: 62   IRWCGENDRAGMLMPRMVTVGDLDLDESLGALLDPLGASDIPPAVEPTRRLLELAQLVEE 121

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN---- 174
             R  L               P+  A  + LA  +A  +D +  E+K+ EDL +       
Sbjct: 122  ERADLG------------KPPLPGAARMRLASEIARTMDRLLVEDKEPEDLTSDAVLDML 169

Query: 175  EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIA 233
                  W  +          W  RL E         +  L    ++   +   + PII A
Sbjct: 170  GDLSDHWKDSLRLFARVQARWRSRLDENGEVDAATRRNLLFERASKRWREIPPETPIIAA 229

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---- 289
            G T + PA AR++  +A+ P GA++LP LD  +    W+ +             +     
Sbjct: 230  GVTSASPALARMLRVIAHLPCGAVILPDLDLSLGDEAWDELGRAGATPEPGGEVFGQSDA 289

Query: 290  -THPQYSLAKLLDFLDIKREDVKRLG--NVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
             THPQY L  LL+ + I R +V+      ++     RS  IS  FLPP  S         
Sbjct: 290  LTHPQYHLKLLLERMGIARAEVRAWHRSGMTAADPARSHAISSLFLPPKASRSWV----- 344

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406
             ++   ++  S V L+ +    EEA +IA+ +R +L+E  K+ A++TADR+LARRV   L
Sbjct: 345  -ELGPEKRRLSGVKLMTSATSEEEAQAIALLVREALEEPAKRIAVVTADRSLARRVTQHL 403

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
             R+ I  D SAG  LS T    +L  L + +        +  L+ HPL      +    R
Sbjct: 404  ERWSIMADDSAGRALSLTPAGRLLGLLADIMSHGLAPAGLVALIAHPLV--KRGDGEARR 461

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                      R  +        + L         +                       + 
Sbjct: 462  QWLRNVRKFDRALRGPSPAPGFEPLRQIAREAGVS--------------------EWFEE 501

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
            + + ++PLV              ++   +                   +W  E+G+ LS 
Sbjct: 502  VEEILSPLVDLPETITLAQSLDMLASSAERLAA-------------EAVWAAEDGRALSR 548

Query: 587  LFSKIIETGSCI--KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
            L   +      I    +  +   I+   +D   V+P       + ILG LESR+   D +
Sbjct: 549  LLEDLRLHAREIATTVSPSDIASILRDRMDEVAVRPPYGGHPRVAILGLLESRMARADLV 608

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
            I GGLNEG WP+    +  L+  +   L +  AE  IG AAHD   A G   ++ +RS R
Sbjct: 609  ICGGLNEGSWPQAPGSDALLAPGVLRALGVPGAEFRIGLAAHDLAGAMGAPEVVLSRSQR 668

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
            +   PT+ SR++ R+  L G     + +KR    L            P Y RP+P P  +
Sbjct: 669  DAEGPTLPSRFVLRVEALLGELAGRHREKRTPAMLPLLD--REPEPAPAYPRPQPTPTAD 726

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP--DRTDRGTLFHNIITELIKK 822
             +    S + + +L+ DPY  YA+ IL L  +     DP  D   RGTL H+I+    K 
Sbjct: 727  QRKVRISATALDRLLGDPYQFYAQEILGLRRLDPLAADPFGDPALRGTLVHDILDAWHKA 786

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH-EEKIQSSIEKI 881
            R    T EI        +  F +  + P    +W+         F +  ++  +     +
Sbjct: 787  REAHPTLEIA----PFAERMFAEAKVHPLFKGLWQPRLVAAMERFEQWVDDAAKDGRTVL 842

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
                  +M+++ I +  +G ADRID L  G + + DYKTG        +     Q+ +  
Sbjct: 843  VTETRGEMSVDGIPV--SGRADRIDRLGDGRLVVVDYKTGGPASASQVEAGYALQMGILG 900

Query: 942  AALKAGSFS-QIDCRKVANLFYIRLKQKFK---------IDCITNDKKKYSADELSEKSL 991
               + G+F       +VA   Y  L +               +T  +K  + +E   +  
Sbjct: 901  LIARDGAFEKGKLSGEVATYEYWSLGRSKDDGEFGYQTVPLKMTPRQKGLTPEEFLPRHE 960

Query: 992  KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033
            + L   ++    G+ PF +           S+YD L R+ EW
Sbjct: 961  EFLNTAISKYLLGDAPFTAKENP--DYLGYSDYDQLMRLEEW 1000


>gi|294011635|ref|YP_003545095.1| putative helicase [Sphingobium japonicum UT26S]
 gi|292674965|dbj|BAI96483.1| putative helicase [Sphingobium japonicum UT26S]
          Length = 992

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 257/1054 (24%), Positives = 420/1054 (39%), Gaps = 88/1054 (8%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            +P +F I     F   ++  +L             +P+ LA   I +P  RAI+ +   F
Sbjct: 6    RPALFNIPAHRAFSDALVTGVLTQH--------GDDPMRLAQGMILLPNNRAIRSVSDAF 57

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-----LNPPVSNIQRLLELARLILIW 119
            +  +G    +LP + +LGD    +     L         + P ++ ++R + LAR++   
Sbjct: 58   VRKSGGG-LLLPRLVALGDPDLGEQVGGALDPLGEDDDPIPPAIAPMRRQMILARMVQQA 116

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK-YG 178
                               P+    A+ LA+ L  ++D I+ E      L  L       
Sbjct: 117  SA----------------HPVDAGQALKLAQALGAVLDQIQVERLSVAALADLTLSDELS 160

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTG 237
              W  +     I    W + L  L        +  L+   A        +G +I+AG + 
Sbjct: 161  RHWQTSLKLFGILLAQWPQELSRLGCIDLADRRNRLLERVAARWAKAPPEGFVIVAGMST 220

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY--STHPQYS 295
            + PA A L+  +A  P GA+V  GLD  +    W+ I     +  +        THPQY+
Sbjct: 221  TAPAIAGLLRRIALMPKGAVVFAGLDQEMDRDAWDAIGPFDADPLTGRAPAGHETHPQYA 280

Query: 296  LAKLLDFLDIKREDV--KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            L +LLD +   R+DV   R G+  +    R   IS + LPP  +           +    
Sbjct: 281  LKRLLDRMSATRDDVALWRWGSEHDARAVRGRNISNAMLPPRLTSRWR------DLKTAD 334

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
            +  + V  +E     EEA +IAIALR +++   + +AL+T DR LA RV   L R+GI  
Sbjct: 335  RSLAGVEALEVATPGEEAQAIAIALREAVETPGRTAALVTPDRQLATRVSAHLRRWGIEA 394

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            D SAG+PLS     ++L ++  A+ +    +A+ TL+KHPL   G            L+L
Sbjct: 395  DDSAGLPLSRLPPGTLLIAMAEALAERFAPVALLTLLKHPLVMRGEERLGWLEGVRGLDL 454

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
            +  RG +    I+ L  L+ +R    +                +    L        + P
Sbjct: 455  LL-RGPRPQAGIVGLDLLLAERDGEDR------------QCVLRGRTRLWWAEARALLEP 501

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            L             L+  D         ++     H  +           L +   +   
Sbjct: 502  LEQAF---------LAAPDLAAQLAAIREHAGRLSHDAVWAGHQGHAAADLFAEMEEAAS 552

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
             G   +A+      +   L+ G +V+P       + ILG +E+RL+  D +ILGGLNEG 
Sbjct: 553  EGP-RQADIRALPALFDHLLGGVSVRPPQGGHPRIAILGLIEARLVQTDLIILGGLNEGT 611

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
            WP   A +P+L+  ++ ++ L   E  IG AAHDF  A G   ++ TR+ R +  P +AS
Sbjct: 612  WPGLPAPDPWLAPRIRREIGLPGLESRIGLAAHDFASALGAPQILITRARRGSGGPAVAS 671

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
            R+  RL  + G        K    Y    + +D+  +     RP P PPL  +P+    +
Sbjct: 672  RFWLRLKAMAGPQ-----WKSAGRYAALAQAIDHAAEHRPAGRPAPVPPLSVRPKVIPVT 726

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            ++ +L  DPYA YARRIL+L  +     D     RGT  H I+ +  +            
Sbjct: 727  DVDRLKADPYAFYARRILRLARLDPVDADAGPAWRGTAVHEILQQWAEAGSGDLAD---- 782

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNIPAKMAIE 892
             ++    + F++ ++ P +  +W+    +             ++    + V I  +  I 
Sbjct: 783  -LEARARAMFDRPDVHPLLKALWQPRLIEAIRWIAAEVASDLAAGRKILAVEIEGRAEIA 841

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
              G+ LTG ADRIDLL  G + I DYKTG  P     +     QL L     +   F   
Sbjct: 842  --GVTLTGKADRIDLLPDGKLGIVDYKTGKPPSARQVKAGYALQLGLLGLIAEHDGFPGT 899

Query: 953  DCRKVA-NLFYIRLKQKFK-------IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004
                VA    Y  L +K                + K    + + +      ++      G
Sbjct: 900  HPAPVAGGFEYWSLAKKGDSFGYRESPVDPLGKRDKIVTADFTSQVYSQFEDVAAAWLTG 959

Query: 1005 EQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
            + PF + +    +     +YD L R+ EW    D
Sbjct: 960  QAPFDAQVNP--EVANYGDYDQLMRLEEWYGRDD 991


>gi|114568639|ref|YP_755319.1| hypothetical protein Mmar10_0085 [Maricaulis maris MCS10]
 gi|114339101|gb|ABI64381.1| conserved hypothetical protein [Maricaulis maris MCS10]
          Length = 1016

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 269/1057 (25%), Positives = 435/1057 (41%), Gaps = 72/1057 (6%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
               P ++TI P + F R +   L              +P  L  + I  PT+RA + L  
Sbjct: 8    TSGPCLYTIPPQADFLRVLATTLREEFDAAG------DPDALTRLLILTPTRRAAKALGD 61

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN-PPVSNIQRLLELARLILIWRN 121
             F E+ G    +LP+I+ +GDV  +    +      L  P +S  +R  ELARLI     
Sbjct: 62   VFAELAGNGVALLPLIRPIGDVDVDDPPFEPGELAGLAAPAISIERRRYELARLI----- 116

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK-KWEDLHALKNEKYGMW 180
                    L  E+ L  P+    A+ L+ +LA ++D + TE+     DL           
Sbjct: 117  --------LAKEAALGRPLGVGGALALSDSLAALLDDLATEDVSDLSDLQDAVTTYLPAD 168

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239
               A +F+ I  + W  RL EL  +     +  ++        K     P++  GSTGSI
Sbjct: 169  RREAVEFIDIVQRVWPARLAELGLTDAAARRSLILHELVARWTKQPPDHPVLAVGSTGSI 228

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PA  +LM  +AN P GA+VLPG D     + W++I +              HPQ+++  L
Sbjct: 229  PAARKLMKVIANLPQGAVVLPGFDWDADASAWDSIKD-------------DHPQWAMKTL 275

Query: 300  LDFLDIKREDVKRLGNVSNEM--YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ---- 353
            +D L + R  +      + +     R  +I+++  P DT+D     I E +         
Sbjct: 276  VDELGVDRLQMPSWPGAAEDSLAERRRRLIAEALRPADTTDEWLKRIGELQGRFGDSFFN 335

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
               + ++L+E  +E  EA + A+ LR  L+   + + L+T DR LARRV  E+TRFG+ +
Sbjct: 336  DGMTGLSLVETADEISEARACALMLREVLETPDRTAILVTPDRMLARRVSAEMTRFGVRL 395

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            D S G  L+ T+  + LT LL+        +A+  L   PL + G             E 
Sbjct: 396  DDSGGAALAETMAGAFLTRLLDVALDCGRVVALTALWGSPLFRAGHRRGQTHTVLAKFEA 455

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
             ALRG +   D+  +++ +  +     +             ED+     ++D +   +  
Sbjct: 456  EALRGARPGRDLAAVRARLDGQYVRLFD-------------EDRATINAILDQLDTSLAG 502

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            L+T      S                       D       +W  E G+  + L   ++E
Sbjct: 503  LLTPGKRSASAWARAHAE-------AAEALASDDSGSGAQAVWVGEGGEAAAGLLRSLLE 555

Query: 594  TGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
                +   +  E+      +     V P++     L +LG LE+RL+  D +IL GLNEG
Sbjct: 556  ESESLPDMSLPEYAAAFGEMCRSRRVAPRLGVHPRLQVLGPLEARLITADRVILAGLNEG 615

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
            VWP     +P+LS  M+  + L   E+  G AAHDF        +I TRS +    PT+A
Sbjct: 616  VWPPGPGADPWLSPGMRRTVGLGAPERRYGLAAHDFAQLAAAPDVIMTRSGKSEGSPTVA 675

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--- 769
            SRWL RL  L         +       D+              R  P P           
Sbjct: 676  SRWLWRLKTLARGALGAAAEAAFAPETDYAALSRRLDDPGAPPRAAPRPQPAPPVPVRPR 735

Query: 770  -YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S +EI+  + DPY++YAR +L L  +      PD  +RG+  H+ +  ++    +   
Sbjct: 736  QMSITEIRTWVRDPYSIYARHVLGLRRLDPADMPPDARERGSALHDALEAVVPAWSDGIP 795

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-VNIPA 887
             +    +    +    +    P   ++ R  F + +   +  E + ++    +  V I  
Sbjct: 796  EDAVKQLVAHAELKLAEAGFGPEEMVLERARFERAASWLVGWEAERRARGIHLDKVEIFG 855

Query: 888  KMAIES--IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
             M  E       LTG +DR D    G +DI DYKTG +   ++ +   DPQL L AA   
Sbjct: 856  SMPFEGPAGPWTLTGRSDRFDRHPDGRLDIIDYKTGGSASAKSIKAGFDPQLPLTAAMAA 915

Query: 946  AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD--ELSEKSLKNLIEIVTLLQN 1003
            AG+F  ++  + A L+YI L                + D     E +L +L   +    +
Sbjct: 916  AGAFEALEAGEAAGLYYISLPGNAGGGKEVRIDGGRNPDVASYVEGALTDLTGWIARFDD 975

Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYDIS 1040
               P+ S +R  + +N   ++DHLAR  EW    + S
Sbjct: 976  ETTPYESQIRA-QYTNDYGDFDHLARRGEWGSAAEGS 1011


>gi|94496378|ref|ZP_01302955.1| helicase [Sphingomonas sp. SKA58]
 gi|94424124|gb|EAT09148.1| helicase [Sphingomonas sp. SKA58]
          Length = 989

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 248/1053 (23%), Positives = 413/1053 (39%), Gaps = 89/1053 (8%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            +P +FTI     F   ++  LL             + + LA   + +P  RAI+ +R  F
Sbjct: 6    RPALFTIPAHRAFADALVTGLLAQH--------RGDVMALAQAMVLLPNNRAIRAVRDAF 57

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIWR 120
            +  +G    +LP + ++GD    +     L        + P +  ++R + LAR++   R
Sbjct: 58   VRQSGGG-LLLPRLVAIGDPDLGEQVGGALDPLGEEEPIPPAIDPMRRQMLLARMVQDVR 116

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK-NEKYGM 179
                               +    A+ L + L  ++D ++ E      L  +  +     
Sbjct: 117  -----------------PEVDAGQALQLGQALGTVLDQMQVERISPRALRDIDLSADLSR 159

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGS 238
             W ++    +I    W   L  +        +  L              GP++ AG + +
Sbjct: 160  HWQVSLTLFEILITRWPAELARIGCIDLADRRNRLFDRLTARWALHPPSGPVVAAGISTT 219

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS--SNTTYSTHPQYSL 296
             PA ARL+  +A  PNG +V  GLD H+    W+ I     +  +      + +HPQY+L
Sbjct: 220  APAIARLLRCIAETPNGMVVFAGLDQHMDADAWDAIGPFDPDPATGQRVPGHESHPQYAL 279

Query: 297  AKLLDFLDIKRED--VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +LLD +   R+D    R G+  +    R   IS + LPP  +           +    +
Sbjct: 280  KQLLDRMSATRDDVAQWRWGSEHDARAVRGRNISNAMLPPRLTSRWR------DLKTADR 333

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
              + V  +E     EEA +IAIALR  L+   + +AL+T DR LA RV   L R+GI+ D
Sbjct: 334  SLAGVEALEVATPGEEAQAIAIALREVLETPARTAALVTPDRQLATRVSAHLRRWGIDAD 393

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
             SAG PLS     ++L ++  A+ +    + + TL+KHPL   G            L+L+
Sbjct: 394  DSAGQPLSRLPPGTLLIAMAQAVAERFAPVPLLTLLKHPLVMRGDARIAWLDGVRGLDLL 453

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
              RG +    +  +  ++  R   ++            +      A  L++ +       
Sbjct: 454  L-RGPRPQAGLHGIDLVLRARDDDRQRTLRDQVRAWWPT------ARALLEPLETAFATT 506

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                    +     S+     +      +   D    +                 +    
Sbjct: 507  TGLAGQLAALREAASLLSAEAIWAGHHGHAAADLFADM-----------------ESAAP 549

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                +A+A     ++  ++ G +V+P       L ILG +E+RL   D +ILGGLNEGVW
Sbjct: 550  EGPRQADARALPALLDDMLSGLSVRPPQGGHPRLSILGLIEARLTQADVMILGGLNEGVW 609

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
            P   A +P+L+  ++ DL L   E  IG AAHDF  A G   ++ TR+ R +  P +ASR
Sbjct: 610  PGLPAPDPWLAPRIRRDLGLPGLETRIGLAAHDFAGALGAPRVLITRARRGSGGPAVASR 669

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
               RL  + G        K    Y    R +D        +RP P PP+  +P     ++
Sbjct: 670  LWLRLKAMAGPQ-----WKTADRYAAMARAIDAPLVYGPTRRPAPSPPIAVRPHVIPVTD 724

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
            + +L  DP+A YARRIL+L  +     D     RGT  H ++    +      T      
Sbjct: 725  VDRLKADPFAFYARRILRLARLDPVDADAGPAWRGTAVHEVLQRWAEAGTLDPTD----- 779

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNIPAKMAIES 893
            ++    + F++  + P +  +W+    +          + +S     I V    +  +  
Sbjct: 780  LEVRARAMFDQPEVHPLLKALWQPRLIESIRWIAAEVARDKSEGRTIISVEQEGRADVA- 838

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
             G+ L G ADR+D L  G + I DYKTG  P     +     QL L     + G F  + 
Sbjct: 839  -GVTLMGKADRLDRLADGRIGIIDYKTGKPPSARQVKAGFSLQLGLLGVIAEMGGFDGLG 897

Query: 954  CRKVAN-LFYIRLKQKFK-------IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
               VA    Y  L +K                + K    E +  +  +   +      G 
Sbjct: 898  PAPVAGDFEYWSLAKKGDQFGYRERPVDPLGKRDKIITQEFTAHAHAHFEGLANDYLLGS 957

Query: 1006 QPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
             PF++ L    +     +YD L R+ EW    D
Sbjct: 958  APFVAQLNP--EVANYGDYDQLMRLEEWYGRDD 988


>gi|58039097|ref|YP_191061.1| hypothetical protein GOX0628 [Gluconobacter oxydans 621H]
 gi|58001511|gb|AAW60405.1| Hypothetical protein GOX0628 [Gluconobacter oxydans 621H]
          Length = 1016

 Score =  476 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 264/1055 (25%), Positives = 438/1055 (41%), Gaps = 75/1055 (7%)

Query: 8    VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67
            V TIA + PF   +    L                      I VP++RA + L   F+ +
Sbjct: 4    VVTIAGTEPFLDRVAQEWLKRDPAAGTDGPG---------LILVPSRRAGRALMEAFLRV 54

Query: 68   TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
               ++ +LP I ++ DV E+   A + +   L P V   +RL  L+ LIL          
Sbjct: 55   LDTQAALLPRIVAINDVDEDAL-ASIGIDVVLPPAVEPQRRLAVLSMLILQTP------- 106

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAAD 186
                    +        A  LAK LAD++D  E       E L     E++   W     
Sbjct: 107  ---LVSVGVDSTKGIDRAWPLAKALADLMDEAERSGVDLAERLPDAVEERFSDHWQQTLK 163

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPATARL 245
            FL+I +  W + L E   S+PV  QIA ++A+A+    K    P+   G      A + +
Sbjct: 164  FLEIVTAVWPKWLEEEGLSNPVARQIARLKAQAQAWAEKPPLTPVWGVGFADGSAAVSDV 223

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            ++ VA  P G ++LPG+D  +   IW  +               +HPQ  L ++L  L +
Sbjct: 224  LAVVARLPAGLVILPGVDLGMTDEIWADLPP-------------SHPQAGLKEILTDLGL 270

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
             R+++       +   GR +++ +  LP    +    D          +    ++++ A 
Sbjct: 271  SRKELTDWDGGRDR--GRELMLREVLLPEHGIEHWGQDSR-------PRDIDGLSILPAQ 321

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            ++++EA +IA+ LR  + E  K  AL+T DR LA+RV  EL RFGI+ D SAG  LS T 
Sbjct: 322  DQQQEAQAIALILRDVVSEAGKTCALVTPDRALAQRVGTELLRFGIHADDSAGESLSQTP 381

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
             +  L  +  A       +A+ +++KHPLA  G        +   LE + LRG   +  I
Sbjct: 382  AAVFLRLIATAAEARLSPVALLSVLKHPLAALGRTPGDCHASARRLERLLLRGPAPAPGI 441

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              LK+ +       +      H  S  + ++ E     +  I Q   PL++ +       
Sbjct: 442  AGLKAALH---EYTQKKHAPDHGASADAPDEPEGPAAFIARIEQAFDPLLSIEGAIPLPE 498

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKL---PNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                +    +      + +   E         LW  E+G+ LS   + +I     +    
Sbjct: 499  LLERLIHTAEALAATAEELDAPEDEPRHPGARLWLGEDGEALSRHLAALIVNTGILPPQR 558

Query: 603  IEWID------IITRLIDGETVKPKIE--KSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
            +  +D      +  +++ G              + ILG LE+RLL FD ++LGGLNEGVW
Sbjct: 559  LTHLDSFLNTSMAGQMLTGLRAHRGGVELAHPRVSILGVLEARLLAFDVVVLGGLNEGVW 618

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA-NGTRHLIYTRSLRENNIPTIAS 713
            P  T   P+LSR M+  + L + E+  G +AHDF      ++  ++  S R    P + +
Sbjct: 619  PPATDPGPWLSRPMRVRVGLPSPERQTGVSAHDFVSTILASKEAVFASSARREGAPGVPA 678

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRTYSF 772
            RW+ R+    G              LDW R LD           P+P PP+  +PR  S 
Sbjct: 679  RWMVRMDAFLGGRSQSLPL---HPALDWQRCLDQPLAGAEAVAPPEPRPPVALRPRGLSI 735

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +EI+  ++DPYA+YA+ +LKL  +   ++  +  D G + H+ +  ++     +     +
Sbjct: 736  TEIETWMHDPYAIYAKHVLKLRALKPLEEGAEHADFGMIVHDAMERVLSDFPERWPANAS 795

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--------SSIEKIFVN 884
             +++++      K N+ P +   W     +I+    E E   +        +    + V 
Sbjct: 796  AILRRVFAEELAKANMRPALVNWWGPRLARIADWVAEKEAAYRLDMEESGPAQGRFVEVT 855

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
               ++        L G ADRID+   G   + DYKTG  P  +   +    QL LE A L
Sbjct: 856  ASFRLQAAFAPFELRGRADRIDIGADGLATVFDYKTGQPPSGKNVAEGWSVQLVLEGALL 915

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKID---CITNDKKKYSADELSEKSLKNLIEIVTLL 1001
              G+F  +   +   L Y  L           +   +    A  L  ++++ L  +V   
Sbjct: 916  AKGAFKDVPAVETKKLLYWHLTGGDDPGKESEVPGSRSGTDAPTLIGEAMEKLRTLVDEY 975

Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREE 1036
             N +QP+ S           ++Y  LARV EWR  
Sbjct: 976  DNPDQPYRSQPWAGHVPR-YTDYAQLARVDEWRAA 1009


>gi|83859062|ref|ZP_00952583.1| hypothetical protein OA2633_11695 [Oceanicaulis alexandrii HTCC2633]
 gi|83852509|gb|EAP90362.1| hypothetical protein OA2633_11695 [Oceanicaulis alexandrii HTCC2633]
          Length = 1017

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 288/1057 (27%), Positives = 458/1057 (43%), Gaps = 80/1057 (7%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             +  P VFT+ P++PF  E+   L              +P  L+ VT+ +PT+RA +EL 
Sbjct: 8    SSPSPRVFTLPPAAPFLTELARGLTEAF---------PDPEALSRVTVLIPTRRAGRELA 58

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP-PVSNIQRLLELARLILIWR 120
              F  ++   + +LP+I+ +GDV  ++   +      + P  VS  +R  ELA LIL   
Sbjct: 59   EAFTRLSPG-AALLPMIRPIGDVDADEPPFEPGELAEIAPEAVSPARRRFELASLILQKE 117

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK-WEDLHALKNEKYGM 179
              +   +      +         + +              TE+      L          
Sbjct: 118  KAVGRSMGAGGALALADDLARLLDDLA-------------TEDVDDLGALTEEIRANLPA 164

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGS 238
                AA FL I    W ERL E+    P   +  L++A A+         P+I AGSTGS
Sbjct: 165  HMQEAAMFLDIVLVAWPERLKEMQRVDPARRRSLLLKALAKRWRDNPPADPVIAAGSTGS 224

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
            IPA A L+S VAN P G IVLPG    +    W  I +              HPQ ++  
Sbjct: 225  IPAAAALLSAVANLPQGCIVLPGFARDMDEEGWAAIDD-------------GHPQRAMKT 271

Query: 299  LLDFLDIKREDVKRLGNVS--NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK-- 354
            L++ L I+R DV+         +   R+ VI+++  P + +      + + K    +   
Sbjct: 272  LIESLGIERHDVRFWPGAEEGRQDAPRARVIAEALRPAEATADWLRRVEDLKEAWGEDVF 331

Query: 355  --CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
                  +++I+A    EEA +IA+ LR +L+    +  L+T DRNL+RRV  E+ RFG+ 
Sbjct: 332  ETALEGLSVIDAPAPAEEARAIALMLRETLETPGARGILVTPDRNLSRRVITEMARFGVT 391

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            +D SAG PLS T   + L  +L A       +A + L   PL   G     L      +E
Sbjct: 392  VDDSAGQPLSDTPSGAFLIRVLQAALDPGSALAFSALATSPLFSLGEERAPLRGVLGTME 451

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
              ALRG +  +D   L   V D     ++                             I 
Sbjct: 452  RRALRGRRPGHDWDALYEHVRDAAGDDEDRR---------------------RRWGGIIE 490

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL-DEHRKLPNLWFEEEGKTLSSLFSKI 591
             + T  +  ++  G+  ++ WT+  V   + +   DE      LW  + G+  + L  + 
Sbjct: 491  AMATALSPLSALEGDQPLAVWTRALVESAEALARNDEMAGADRLWATDAGENAAQLMREF 550

Query: 592  IETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +E    +   +  ++   +        ++P+      L ILG LE+RL   D +IL GLN
Sbjct: 551  MEEADALPPVSLHDFTRAVLETARSRLIRPRYGAHPRLQILGPLEARLAEADRVILAGLN 610

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
            EGVWP     +PFLSR M+    L   E+  G AAHDF      R +  TRS + +  PT
Sbjct: 611  EGVWPAPPKSDPFLSRGMRIAAGLSAPEERFGLAAHDFAQLACARDVTLTRSAKVDGAPT 670

Query: 711  IASRWLQRLLVLGGT---DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
            +ASRWL RL  L      +         Q YL +   LD T +Q   + P+P PP+EA+P
Sbjct: 671  VASRWLWRLQTLARGALGERAQAALAPAQDYLGFANALDETAEQTMIRPPEPAPPVEARP 730

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK- 826
            R  S ++I+  I DPY+++AR+ILKLD +    +     +RGT +H  +   ++   +  
Sbjct: 731  RKLSVTQIETWIRDPYSIFARKILKLDKLDPLDRPAGAPERGTAYHAALERWVRSLGDTE 790

Query: 827  -NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVN 884
                +    +     +   +     +   +    F +++   +  EE  +        + 
Sbjct: 791  ILPRDALQRLLAHGQTALSEAGFSENALGVEMKRFERVAQFMVAFEEARREDGFTPAALE 850

Query: 885  IPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
                ++ ++ G    LTG ADRIDL  SG +DI DYKTG  P  +       PQL LEAA
Sbjct: 851  ALGDISFDAPGGLFTLTGRADRIDLRPSGALDILDYKTGMPPSAKEVAAGFAPQLPLEAA 910

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQK---FKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
                G+F      +  +L Y+RL       +   +  +     A  L+E++L+ L++ V 
Sbjct: 911  MAARGAFEHAPSHEPGDLMYVRLSGGRVPGEPRSMVRNPDGDDAGMLAEQALERLMKWVA 970

Query: 1000 LLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREE 1036
               + ++ + S  R+ + +N   +YDHLAR  EW   
Sbjct: 971  AFDDPQRTYPSQPRV-KFTNKWGDYDHLARRKEWASA 1006


>gi|307292810|ref|ZP_07572656.1| double-strand break repair protein AddB [Sphingobium chlorophenolicum
            L-1]
 gi|306880876|gb|EFN12092.1| double-strand break repair protein AddB [Sphingobium chlorophenolicum
            L-1]
          Length = 991

 Score =  472 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 256/1052 (24%), Positives = 420/1052 (39%), Gaps = 85/1052 (8%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            +P +F I     F   ++  +L             +P+ LA   I +P  RAI+ +   F
Sbjct: 6    RPALFNIPAHRAFSDALVAGVLAQH--------GDDPMRLAQGMILLPNNRAIRSVSDAF 57

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIWR 120
            +  +G    +LP + +LGD    +     L        + P ++ ++R + LAR++    
Sbjct: 58   VRKSGGG-LLLPRLVALGDPDLGEQVGGALDPLGEDEAVPPAIAPMRRQMILARMVQQAS 116

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK-YGM 179
                              P+    A+ LA+ L  ++D I+ E      L  L        
Sbjct: 117  A----------------HPVDAGQALKLAQALGAVLDQIQVERVSVAALADLTLSDELSQ 160

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGS 238
             W  +     I    W + L  L        +  L+   A        +G +I AG + +
Sbjct: 161  HWQTSLRLFGILLAQWPQELARLGYIDLADRRNRLLDRVAARWAKAPPEGFVIAAGMSAT 220

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY--STHPQYSL 296
             PA A L+  +A  P GA+V  GLD  +    W  I     +  +        THPQY+L
Sbjct: 221  APAIAGLLRRIALLPKGAVVFAGLDQEMDGDAWEAIGPFDADPLTGRAPAGHETHPQYAL 280

Query: 297  AKLLDFLDIKREDV--KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +LLD +   R+DV   R G+  +    R   IS + LPP  +           +    +
Sbjct: 281  KRLLDRMSATRDDVALWRWGSEHDARAVRGRNISNAMLPPRLTSRWR------DLKTADR 334

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
              + V  +E     EEA +IAIALR +++   + +AL+T DR LA RV   L R+GI+ D
Sbjct: 335  SLAGVEALEVATPGEEAQAIAIALREAVETPGRTAALVTPDRQLATRVSAHLRRWGIDAD 394

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
             SAG PLS     ++L ++  A+ +    +A+ TL+KHPL   G            L+L+
Sbjct: 395  DSAGQPLSRLPPGTLLIAMAEALAERFAPVALLTLLKHPLVMRGEERLGWLEGVRGLDLL 454

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
              RG +    I+ L  L+ +R    +                +    L        + PL
Sbjct: 455  L-RGPRPQAGIVGLDLLLAEREGEDR------------QRVLRARTRLWWAEARALLEPL 501

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                         L+  D         ++     H  +           L +   +    
Sbjct: 502  EQAF---------LAAPDLAAQLAAIREHAGRLSHDAVWAGHQGHAAADLFAEMEEAASE 552

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
            G   +A+      +   L+ G +V+P       + ILG +E+RL+  D +ILGGLNEG W
Sbjct: 553  GP-RQADIRALPALFDHLLGGVSVRPPQGGHPRIAILGLIEARLVQTDLMILGGLNEGTW 611

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
            P   A +P+L+  ++ ++ L   E  IG AAHDF  A G   ++ TR+ R +  P +ASR
Sbjct: 612  PGLPAPDPWLAPRIRREIGLPGLESRIGLAAHDFASALGAPQILITRARRGSGGPAVASR 671

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            +  RL  + G        K    +    + +D+  +     RP P PPL  +P+    ++
Sbjct: 672  FWLRLKAMAGPQ-----WKSADRHAALAQAIDHAAEHRPASRPAPVPPLSVRPKVIPVTD 726

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
            + +L  DPYA YA+RIL+L  +     D     RGT  H I+ +  +   +  T      
Sbjct: 727  VDRLKADPYAFYAKRILRLARLDPVDADAGPAWRGTAVHEILQQWAEAGSSDLTD----- 781

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
            ++    + F++ ++ P +  +W+    +             ++  KI   +  +   +  
Sbjct: 782  LEARARAMFDRPDVHPLLKALWQPRLIEAIRWIAAEVASDLAAGRKILS-VEIEGRADIA 840

Query: 895  GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
            G+ LTG ADRIDLL  G + I DYKTG  P     +     QL L     +   F     
Sbjct: 841  GVTLTGKADRIDLLPDGKLGIVDYKTGKPPSARQVKAGYALQLGLLGLIAEHDGFPGTHA 900

Query: 955  RKVA-NLFYIRLKQKFK-------IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
              VA    Y  L +K                + K    + + +      ++V     G  
Sbjct: 901  APVAGGFEYWSLAKKGDAFGYRESPVDSMGKRDKIITADFTSQVYAQFEDMVAAWLTGSA 960

Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
            PF + +    +     +YD L R+ EW    D
Sbjct: 961  PFDAQVNP--EVANYGDYDQLMRLEEWYGRDD 990


>gi|330991805|ref|ZP_08315754.1| hypothetical protein SXCC_01710 [Gluconacetobacter sp. SXCC-1]
 gi|329760826|gb|EGG77321.1| hypothetical protein SXCC_01710 [Gluconacetobacter sp. SXCC-1]
          Length = 1016

 Score =  469 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 257/1052 (24%), Positives = 424/1052 (40%), Gaps = 72/1052 (6%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             V  + P  PF  ++    L+            +P    +  I +P++RA + L   F+ 
Sbjct: 13   RVAVVPPHVPFVDQIAARWLD--------QAGHDPRECGTGLILLPSRRAARALTEAFMR 64

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
                +  +LP I  +  + E         + +L P V  ++RL  L+ L++       D+
Sbjct: 65   QVDGRPLLLPRIAPIAALDEASLALSGQNALDLPPAVDPVRRLATLSLLVMQAGKAFGDV 124

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE-DLHALKNEKYGMWWLLAA 185
                              A  LA+ LAD++D  E  E      L       +   W    
Sbjct: 125  Q-------------GVDQAWPLARALADLMDEAEWAECDLRTRLPHAAEGDFAQHWHQTL 171

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK---GPIIIAGSTGSIPAT 242
             FL I +  W   L E    +PV  Q AL+ A+A    +       PI   G   ++P+T
Sbjct: 172  RFLSIVTSVWPAWLAEQGVMNPVARQTALLHAQAARWEREPPAPGTPIWAVGFADAVPST 231

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
              ++  V + P+G +VLPG+D     A+W  +                HPQ   A++L  
Sbjct: 232  IAMLRAVLSVPDGLLVLPGVDTTCAQAVWEHLPP-------------DHPQAGTARMLAE 278

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            L I R+ +++  ++       S       L          +      P+       ++++
Sbjct: 279  LGIARDGMEQWDSLPPGSTATSPAARAGLLARALLPAHALEQWR--APDAPVAADGLSVL 336

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
             + +++EEA +IA+ LR  L++  +++AL+T DR LA RV  EL R+G+  D SAG  L 
Sbjct: 337  RSADQQEEAAAIAMVLRQVLEQPGRRAALVTPDRALAGRVATELVRWGVIADDSAGESLL 396

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
            T   ++ L  ++ A+      +A+ +++KHPLA  G        +   LE + LRG    
Sbjct: 397  TIPQTAFLRLIVQAVDGGLSPVALLSVIKHPLAACGLSPGNCRASARQLERLVLRGPAPP 456

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
              I  L+  +             PH     + +  E     ++ +     PL+       
Sbjct: 457  PGIAGLRRALARAADD-------PHGALADAPDAPEEINAFLNRLEAAFGPLLAL----- 504

Query: 543  STCGNLSISDWTKLTVTCLQNVCL-DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-A 600
                 + +       +   Q++           LW  EEG  L    S ++     +  A
Sbjct: 505  PVSTPVPVPTLLAALIEVAQDLATTGSADGAERLWAGEEGNALGQHMSAMLAWCDVLPDA 564

Query: 601  NAIEWIDIITRLIDGETV-------KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                   ++   + G TV                +FI G LE+RL   DT++LGGL E V
Sbjct: 565  RLGTLDGLLASSLAGMTVQGRRAVRGRAGAVHPRVFIWGLLEARLQTADTIVLGGLVETV 624

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENNIPTIA 712
            WP  T   P++SR M++ + L   E  IGQAAHDF   A     ++ + + R    PT+ 
Sbjct: 625  WPPATDPGPWMSRPMRTRVGLPAPEWVIGQAAHDFVSCACAAPRVVLSVAGRRQGAPTVP 684

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA-QPRTYS 771
            +RWL RL                   L W   LD     P    P    P    +PR+ S
Sbjct: 685  ARWLVRLDAYLAGH---GHGLPAHPALRWLEGLDRPAGVPMPVAPPRPRPAVGLRPRSLS 741

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             +EI+  + DPYA+YARRILKL+ +   ++  D  D G + H  +    +        + 
Sbjct: 742  VTEIETWMRDPYAIYARRILKLNRLADLEELADAADYGQIVHAALDRWFRAHPADWPADG 801

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK--IFVNIPAKM 889
               M+ +      +  L P +   W     +I+      E+  +++     +       M
Sbjct: 802  AVRMQAVFADVLREAGLRPALAAWWAPRLERIATWCARTEQARRATGAPCTVLTEQGGTM 861

Query: 890  AIESIG---IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             ++ +      L G ADRIDL   G + + DYKTG  P + +  +    QL LEAA +++
Sbjct: 862  RLDDLPGGAFTLRGRADRIDLHGDGALSLFDYKTGTLPARRSVIEGWQSQLVLEAAMIES 921

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
            G F      +VA L Y RL        + +  +     +L     + L ++V    + EQ
Sbjct: 922  GGFPPPVAGRVAELVYWRLTGGHVPAQVLDVARGTELSDLIAHCRQGLHDLVAAYDSPEQ 981

Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
            P++SH    E+     +Y HLARVAEW    +
Sbjct: 982  PYLSHPWPGEEPRFA-DYAHLARVAEWSAARE 1012


>gi|149184292|ref|ZP_01862610.1| helicase [Erythrobacter sp. SD-21]
 gi|148831612|gb|EDL50045.1| helicase [Erythrobacter sp. SD-21]
          Length = 1009

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 242/1075 (22%), Positives = 415/1075 (38%), Gaps = 107/1075 (9%)

Query: 1    MHNKK--PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQ 58
            M + K  PNV++IA    F   ++  L+     +      L  LL        P+ RA +
Sbjct: 1    MADAKGGPNVYSIAAHRGFADALVAGLVPRYADDELGLARLTLLL--------PSARARR 52

Query: 59   ELRSEFIEITG---KKSTILPIIKSLGDVVEEKFTADLLLSY---NLNPPVSNIQRLLEL 112
             +   FI   G   +   ++P +  +GD+  ++    LL      ++ P +   +R+  L
Sbjct: 53   TVSEAFIRHAGESGRAGLLMPRMAVVGDLDLDEALGPLLDPLGASDIPPAIDPQRRMFAL 112

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            ARLI     +                    A  + LA+     +D +  E+   E L   
Sbjct: 113  ARLIAEEMGEEAPKG---------------ATLLRLARETGATMDRLLVEDVGPEKLVDE 157

Query: 173  KN----EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR-AEAEHLMKGTK 227
            K           W  +          W   L           +  L   A      +   
Sbjct: 158  KVVDIFPDLSKHWQESIRLFANVQAKWLAWLNAQGMLDAAARRNRLFDKARHAWKAQPPA 217

Query: 228  GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
             PI+ AG T + PA A+L+  V+  P GA++LP  D  +   +W+ +       T  +T 
Sbjct: 218  TPIVAAGVTSAAPALAKLLRVVSELPQGAVLLPDFDLTMDEGVWDELGRAGAAPTPGDTV 277

Query: 288  YS-----THPQYSLAKLLDFLDIKREDVKRLG--NVSNEMYGRSMVISKSFLPPDTSDMR 340
            ++     THPQY L  LL+ + + RE+V+      ++     RS  IS  FLPP+ S + 
Sbjct: 278  FAREDAVTHPQYHLKLLLNRMGVAREEVQPWHRKGMTAAPPERSHAISALFLPPEASKVW 337

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLAR 400
                    +P+ ++  S V ++EA N  EEA +IA+ +R +L++  ++ A++T DR LAR
Sbjct: 338  V------DLPSEKRRLSGVRIMEAANPEEEAQAIALMVREALEQPDRRVAVVTPDRPLAR 391

Query: 401  RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            RV   L R+ I  D SAG PLS T            + +    + +  L+ HPL   G  
Sbjct: 392  RVVHHLARWNIVADDSAGRPLSHTAAGRAFLLAAEVMAEGARAVPLMALLGHPLVDGGME 451

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                 R                      +     R     +       +     E +   
Sbjct: 452  RGAWLRRLR-------------------RLERALRGPRLASGLEPAQAEVARLAEKRPEI 492

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
                      + PLV     +       S++D         + +          LW +E+
Sbjct: 493  AEWWALAEAQLAPLV-----ERDRDTPESLADLIDTLAASAEAL------CGEKLWAQED 541

Query: 581  GKTLSSLFSKIIETGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            G+TL++   +          +    +   +++  ++   V+P     + + +LG LE+RL
Sbjct: 542  GRTLAAFVEEFRLHAREAGFETAPRDVAKVLSDAMEERAVRPPYGGHARVQVLGLLEARL 601

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
               D +I  GLNEG WP   + +  L+  +   L +   +  IG +AHD   A G   ++
Sbjct: 602  NRADLVICAGLNEGSWPARGSIDALLAPPVLRALGVPGGDFRIGLSAHDLAGAMGAPEVV 661

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
             +RS R+   P I SR+L R+  L G     + ++     ++  R +      P Y RP 
Sbjct: 662  LSRSGRDEGGPAIPSRFLLRVQALLGELLPRHEERAA---IELARAMTRAEPAPEYSRPM 718

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
            P P  + +    S + + +L+ DPY  +A++I+ L  +     DP+   +G + H I+  
Sbjct: 719  PKPSPQQRDVDISATALDRLLGDPYQFFAQKIMGLSDLDALDADPNPLWQGNIAHTILER 778

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
                R      + +  +  I++   E+EN  P +  +W+    K     +E      +  
Sbjct: 779  WHIARRT----DPDVRIAPIMEEVLEEENADPLVRGLWQPRLLKGLEW-IEETLGSYTER 833

Query: 879  EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
            E + V     M +E   + + G ADRID L+ G + I DYKTG  P     ++    QL 
Sbjct: 834  EVLAVEAKGSMHVED--VFVHGRADRIDRLEDGTLAIIDYKTGKPPTAAQVEQGYALQLG 891

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC-----------ITNDKKKYSADELS 987
            +     + G F  +         Y  L +    +            + N +     +E  
Sbjct: 892  ILGLIAQDGGFEGLTG-DPGGYEYWSLGRAKDDNPHGFGYVEVPLKVGNKRSGVELEEFL 950

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW--REEYDIS 1040
              + K L E +     G  PF +             YD L R+ EW  R+  D+S
Sbjct: 951  PLTRKKLGEAIGKYIKGTDPFTARENP--DYPAYDTYDQLMRLEEWLPRQADDLS 1003


>gi|296117284|ref|ZP_06835875.1| hypothetical protein GXY_15752 [Gluconacetobacter hansenii ATCC
            23769]
 gi|295976177|gb|EFG82964.1| hypothetical protein GXY_15752 [Gluconacetobacter hansenii ATCC
            23769]
          Length = 1049

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 261/1064 (24%), Positives = 435/1064 (40%), Gaps = 77/1064 (7%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             V T+A   PF  ++                  +P    +  I +P++RA + L   F+ 
Sbjct: 27   RVVTVAHHVPFLDQLAA--------RWMAEVGDDPQRTGAGLILLPSRRAARALTEAFLR 78

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
                ++ +LP I  +  + E         + +L P V  ++RL  L RL+L       D+
Sbjct: 79   RADGRALLLPRIAPIAALDEAALALSGEAALDLPPAVEPMRRLATLTRLVLQAGEAFGDV 138

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAA 185
                          +   A  LA+ LAD++D  E  E    E L    +  +   W L  
Sbjct: 139  -------------RTVDQAWPLARALADLMDEAEWAECDLRERLPDAADGDFAQHWHLTL 185

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK---GPIIIAGSTGSIPAT 242
             FL I +  W   L E    +PV  Q+AL+ A+A H  +        +  AG + ++P+T
Sbjct: 186  KFLSIVTGVWPAWLEEQGVMNPVARQVALLHAQAAHWRESPPPAGHRLWAAGFSDAVPST 245

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
              ++ TV + P G +VL  +D  +    W+ +                HPQ   A++L  
Sbjct: 246  VAVLRTVLDLPGGRLVLTPVDMDMDARTWSDLPP-------------GHPQAGTARMLAD 292

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN----------I 352
            L + R+ ++   ++        M  S +         R   +    +P            
Sbjct: 293  LGVGRDGLEVWDDLPAGSKAGDMAGSMAGGMVGAPPGRAALLSHALLPASALGQWLDPAP 352

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
                  ++++   +++EEA +IA+ LR ++++  + +AL+T DR LA RV  EL R+G+ 
Sbjct: 353  APQLDGLSVLHTADQQEEAAAIALILRQAIEQPGRPAALVTPDRALAGRVATELARWGVV 412

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
             D SAG  L+TT  ++ L  ++ A+      +A+ +L+KHPLA  G        +   LE
Sbjct: 413  ADDSAGEGLATTPQATFLRLIVQAVDGGLSPVALLSLLKHPLAACGLSPGNCRASARLLE 472

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
               LRG      I  L++ +          T   H     + +  +     +D + + + 
Sbjct: 473  RAILRGPAPPPGIAGLRAAL-------SRATQDEHGALADAPDAPQELSAFLDRLERALD 525

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL--DEHRKLPNLWFEEEGKTLSSLFSK 590
            PL++  +        LS        +                  LW  EEG  L +  ++
Sbjct: 526  PLLSRASGMEEVVDLLSALVEVAQALATTDAHADTEGGGDGASRLWSGEEGNALGAHLAE 585

Query: 591  IIETGSCIKANAIEWID-IITRLIDGETV--------KPKIEKSSTLFILGTLESRLLNF 641
            ++     + A  +  +D ++   + G TV        + +      +FI G LE+RL   
Sbjct: 586  LLTWCDVLPAQRVGALDGLLASSLAGVTVHGRRALRGREQAAVHPRVFIWGLLEARLQTA 645

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF-EMANGTRHLIYT 700
             T++LGGL E VWP  T   P++SR M++ + L + E  IGQAAHDF   A     ++ +
Sbjct: 646  GTIVLGGLVETVWPPATDPGPWMSRPMRTRICLPSPECAIGQAAHDFIACACAAPEVVLS 705

Query: 701  RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKP 759
               R    P +A+RWL RL                   L W  +LD           P+P
Sbjct: 706  VPGRRQGAPAVAARWLVRLDAYLSGRGQA---LATHPALSWLERLDRPSGAPAPVAPPRP 762

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
             PP+  +PR+ S +EI+  + DPYA+YARRIL L  +   ++  D  D G + H  +   
Sbjct: 763  CPPVALRPRSLSVTEIEIWMRDPYAIYARRILGLKPLAGLEEMADAADYGEIVHEALDRW 822

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
              +  +    +    M ++ +       L P +   W     +I+      EE  ++   
Sbjct: 823  FTRYPDHWPRDGEEEMVRVFEQVLHDARLRPALAAWWAPRLGRIARWCAMTEEARRAGGA 882

Query: 880  K--IFVNIPAKMAIES---IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
               +   +  KM +         L G ADRID    G + + DYKTG  P + +      
Sbjct: 883  SCSVMTELSGKMELSGFSFGTFVLRGRADRIDRDGEGGLSLFDYKTGTLPTRASVLAGWQ 942

Query: 935  PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
             QL LEAA ++AG F+     +V  L Y RL        + +  +     +L  K    L
Sbjct: 943  SQLVLEAAMIEAGGFAPTVAGRVTELVYWRLTGGHVPARVLDIARGEELSDLIAKCRAGL 1002

Query: 995  IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
             + V    N   P++SH    E+     +Y HLARVAEW    +
Sbjct: 1003 YKRVADYDNPHMPYLSHPHPGEEPRFA-DYAHLARVAEWSAARE 1045


>gi|302384282|ref|YP_003820105.1| double-strand break repair protein AddB [Brevundimonas subvibrioides
            ATCC 15264]
 gi|302194910|gb|ADL02482.1| double-strand break repair protein AddB [Brevundimonas subvibrioides
            ATCC 15264]
          Length = 1013

 Score =  462 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 250/1059 (23%), Positives = 417/1059 (39%), Gaps = 82/1059 (7%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P  F I    PF  ++   +L+             P  L+  TI +P +RA +   
Sbjct: 8    AGDTPRWFAIPAHRPFLEDLAAGVLDW-------LGDNPPEALSDATILLPNRRAARAFG 60

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADL-LLSYNLNPPVSNIQRLLELARLILIWR 120
            +        +  +LP ++ LGD+ E++       L  +L P ++++ R  E+AR+I+   
Sbjct: 61   AALATQAADRPVLLPQVRPLGDLEEDEPPFSPGELGLDLPPAIASLTRRFEMARMIVE-- 118

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK-KWEDLHALKNEKYGM 179
                            +  ++P  A+ LA  L   +D    EE      + +   E +  
Sbjct: 119  --------------QFAPGLAPLRALELADGLGAFLDSCHIEEVADPGMVASFGGEDFAE 164

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGS 238
             W  +A+FL +A + W +RL  +        +  L+R  AE       +GP+I AGSTG+
Sbjct: 165  HWQASAEFLGLAVEAWPKRLEAMGLVDASWRRTKLLRLLAERWAGSPPQGPVIAAGSTGT 224

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
            + A A ++  VA+ P G +VLPGLD  +    W  I                HPQ +L +
Sbjct: 225  VKAAADVLKAVASAPQGCVVLPGLDADLDETAWGAIE-------------EQHPQSALKR 271

Query: 299  LLDFLDIKREDVKRL------GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK---- 348
            LL+   + R  V+          V      R  +I ++  P + +     +I   +    
Sbjct: 272  LLERAGVARAAVRPWFRRPVDPGVEARGLARQRLIHEALRPAEATADWREEIRGLRGRAA 331

Query: 349  -----IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
                    I      ++++    E E A +IA+ +R SL+   +  AL+T D  L RRV 
Sbjct: 332  EAGQSADPIALGLQGLSVVTTRTEEEAAATIALMMRESLEMPGRTCALVTPDLALGRRVA 391

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L R+G+  D S+G  L       ++   +  +           L+KH L         
Sbjct: 392  ARLERWGVVADSSSGTGLGQMPVGVLVDLCVRWMADPLAPQTALALIKHELTTLPEATSD 451

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
               A   LE VA RG +   D   +++ +    A ++N      W      +   LA  L
Sbjct: 452  ---AVVELEKVAFRGPRT-RDWTRVEARLTQAGAPRRNGQPPSDWTLGRLAQATALAGRL 507

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                     P         +     ++ +                     ++W   +G+ 
Sbjct: 508  QALSGTATAPFAPRAPLDAAARSLTTLIEALAG----------------ADVWAGSDGEA 551

Query: 584  LSSLFSKIIETGSCI-KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             +++ S++IE G+ + + +  E+ +++  L+   TV+       +L ILG +E+RL+  D
Sbjct: 552  AAAMLSQLIEGGASLGEVSPGEFAELVAGLVRDTTVRTGGATHPSLRILGAIEARLVRAD 611

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
             +IL GL EGVWP+    +PFLSR M+  L+L   E+ +GQ A DF         I   +
Sbjct: 612  RMILAGLEEGVWPRGAPVDPFLSRPMRKALDLPPPERRVGQTAQDFVQGACAPEAILIHT 671

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP--HYKRPKPF 760
             R    P + SRWL RL +L      D    R        R LD          KRP P 
Sbjct: 672  ERRGGQPAVRSRWLWRLEMLTRGAGVD--LDRPTEMQATARALDAPGFGQGGLAKRPAPK 729

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
            PP+  +PRT   + +++ + DPYAVYAR +L L  +    +  +   RG   H  +  L 
Sbjct: 730  PPVARRPRTLPVTGVERWVRDPYAVYARYVLNLRPMDRPGQSAEALLRGQAIHKAVERLT 789

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
                +    +    +  ++                   L    +      E + ++   +
Sbjct: 790  LAWPDVLPEDCEDQIVHLLHEELRHHGFEDAAMAREGPLARNAARWLTAFETRRRAQGIE 849

Query: 881  IFVNIPAKMAIES--IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
            I V     +  ++      +T  ADRI+L  +G   I D+KTG  P  +  +    PQL+
Sbjct: 850  IRVEEEVALTFDADAGPFTVTAKADRIELSSTG-AAILDFKTGAAPSAKQVKSGFAPQLT 908

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
            L  A L     S     +  +L Y+R+  +          +   A +LS  +L  L   V
Sbjct: 909  LTGAILAEAGLSDTGPVEPEDLTYVRVVGRKVAGEAKTLAQGTEAADLSMAALAGLKARV 968

Query: 999  TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
                    P++S +      N    YDHLARV EW    
Sbjct: 969  RRFDLETTPYLSWVAPQFMGNFGGNYDHLARVWEWHVAG 1007


>gi|315497131|ref|YP_004085935.1| double-strand break repair protein addb [Asticcacaulis excentricus CB
            48]
 gi|315415143|gb|ADU11784.1| double-strand break repair protein AddB [Asticcacaulis excentricus CB
            48]
          Length = 1006

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 289/1067 (27%), Positives = 459/1067 (43%), Gaps = 111/1067 (10%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
               P  ++I    PF  ++   L                  L    I  PT+R  +++  
Sbjct: 9    TPAPRWYSIPSGRPFLDDLARGLCEALG-----------DDLPHALILTPTRRGARQMAH 57

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVSNIQRLLELARLILIWRN 121
             F +    K+ +LP +++LGD+ E +   DL  L  +L P +S+ +R  ELA+LI     
Sbjct: 58   AFTDQCRAKALLLPQVRALGDLEEGEPPFDLEHLGLDLPPALSSTRRRFELAKLIKAHYE 117

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED----------LHA 171
                            +P++   A+ LA +LA   D +  EE +  D          L  
Sbjct: 118  --------------SDVPLNARTALELADSLAKFFDSLALEEVEASDRLDRLVHDPDLLH 163

Query: 172  LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPI 230
                     W ++A FL IA   W +RL EL+   P    + L+    +         P+
Sbjct: 164  DDMGAMAEHWQVSARFLAIAVDLWPKRLAELDLMDPSQRLVTLIHRLGKQWEKTPPTHPV 223

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            IIAG+TG+ PATARLM   +    GA+VLPGLD  +   +W  + +             +
Sbjct: 224  IIAGTTGTTPATARLMGLASRFEQGAVVLPGLDLSLAEDVWAQVGD-------------S 270

Query: 291  HPQYSLAKLLDFLDIKREDVKRLG---NVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
            HPQ ++  LLD   + RE V             + R  V++++  P + +    T I   
Sbjct: 271  HPQGAMKALLDRHRVSREVVNTWPVSIEADRARHARRRVLNEALRPAEATKDWRTQIAAL 330

Query: 348  KIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
            K  +        S +  IE  N+ E A  IA+ +R +L+   K +AL+T D  L+RRV  
Sbjct: 331  KAGSEAAIKDGLSGLTHIEGRNDEEVAAVIALLMREALETPGKTAALVTPDITLSRRVTA 390

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L+R+G+  D SAG  L  +L    L SLL+ I +  D + +  L+KHPL++F       
Sbjct: 391  RLSRWGVRPDSSAGDALIHSLVGRFLHSLLDLILEPFDAVKLLALLKHPLSRFADD---- 446

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
             R  N LE++ LRG K       L  L                       E  E A L  
Sbjct: 447  -RHVNILEIIGLRGAKPRNAEEVLSRLTQK--------------------EAFEAADLWQ 485

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
            D++  C+                  +SD+ +      ++V   + +    LW    G T 
Sbjct: 486  DYMDTCL----------IWQRQKTDLSDYVRTLTVWAESVAARDGQ---ALWSGAAGATA 532

Query: 585  SSLFSKIIETGSCIKA-NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            S+L + +I  G      +   ++DI+ R +   TV+        L ILG +E+R+ + D 
Sbjct: 533  SALLADLIAEGRDFLVEDDQVFVDILRRALRTATVRTGGHTHPRLTILGAIEARMFSADR 592

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
            LIL GL EGVWP+    +PFLSR M+  L L + E+  G +AHDF        +      
Sbjct: 593  LILAGLEEGVWPQAAEIDPFLSRPMRKVLGLPSPERRTGLSAHDFVQGASQPEVWMVTRQ 652

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-----YTTKQPHYKRPK 758
            R    P + SRWL RL  L               +LDW R++D              RP+
Sbjct: 653  RREGEPQVQSRWLWRLQTLTTGAGEH--LPTKAQWLDWARRMDGPLSVVPDALKPASRPQ 710

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
            P PP+EA+P     ++I+ L  DPYAVY R +L L  +    +  +   RGT  H +  +
Sbjct: 711  PAPPVEARPLQLPVTQIETLERDPYAVYGRYVLGLKPLDRPNEPFEALRRGTAIHAVAEK 770

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
                 +         +   ++++    ENL      + R LF  ++  ++  E + ++  
Sbjct: 771  FAADDM-PMGEAGVRVFCDMLEAQLRAENLSEAQLALQRPLFPLLAREYVAFEAERRADH 829

Query: 879  EKIFVNIPAKMAIES--IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936
             ++ +    K+ I+       +T  ADR+++ + G VD+ D+KTG  P  +       PQ
Sbjct: 830  PRLLIEQSGKLTIDLPRGTFTVTAKADRVEIHERG-VDVIDFKTGQPPSPKAVIAGFYPQ 888

Query: 937  LSLEAAALKAGSFSQI----DCRKVANLFYIRLKQKFKIDCITNDKK-KYSADELSEKSL 991
            L+L AA LK GSF+        + +  L Y+RL Q      +  DKK   SADE+++++L
Sbjct: 889  LTLTAAILKYGSFNGFEDFHRAKGLHELVYVRLGQDVVKPRVVYDKKNPLSADEMADRAL 948

Query: 992  KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
              L   +   +N +Q ++S      +     +YD LAR+ EW    D
Sbjct: 949  SRLKTRLMQYENPKQGYLSWRAPQYRMERGGDYDQLARLYEWHVLGD 995


>gi|254420230|ref|ZP_05033954.1| hypothetical protein BBAL3_2540 [Brevundimonas sp. BAL3]
 gi|196186407|gb|EDX81383.1| hypothetical protein BBAL3_2540 [Brevundimonas sp. BAL3]
          Length = 1031

 Score =  459 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 267/1067 (25%), Positives = 436/1067 (40%), Gaps = 81/1067 (7%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63
              P  + +    PF  ++   +L            L P  L+  TI +P +RA +     
Sbjct: 10   ASPRWYAVPAYRPFLEDLAAGVLAW-------LGDLPPETLSDATILLPNRRAARAFTGA 62

Query: 64   FIEITGKKSTILPIIKSLGDVVEEKFTADL-LLSYNLNPPVSNIQRLLELARLILIWRNK 122
              +++  +  +LP ++ LGD+ E++       L  +L P +  + R  E+AR+I+     
Sbjct: 63   LSKLSQGRPILLPQVRPLGDLEEDEPPFTPGALGLDLPPAIPALTRRFEMARMIVE---- 118

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK-WEDLHALKNEKYGMWW 181
                             ++P  A+ LA  L   +D  + EE    E +  L + +    W
Sbjct: 119  ------------QFDNSLTPMRALDLADALGGFLDSCQLEEVPNPERIATLVDGEMAEHW 166

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIP 240
              +A+FL +A + W +RL EL    P   +  L+R  AE          +I AGSTG++P
Sbjct: 167  ERSAEFLGLAVEAWPKRLAELGLVDPAWRRATLLRRLAELWDHTPPTQAVIAAGSTGTVP 226

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
            A   ++  VA  P G +VLPGLD  +  A+W+ +                HPQ ++ +LL
Sbjct: 227  AAGDVLKAVARAPLGCVVLPGLDLDLDAAVWDRLD-------------EQHPQSAMKRLL 273

Query: 301  DFLDIKREDVKRLGNVSNEMYG------RSMVISKSFLPPDTSDMRNTDILENKIP---- 350
            D +++ R DV+     S           R  +++++  P + +D     I + +      
Sbjct: 274  DRVEVARADVRPWFAPSQPPAALARGQARQRLVNEALRPAEATDDWRRAIRDLRSTAAAR 333

Query: 351  -----NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN-----KKKSALITADRNLAR 400
                  I +    ++L+    E E A +IA+ +R +L+        +  AL+T D+ L R
Sbjct: 334  GEARDPIAEGLQGLSLLTVRAEEEAAAAIALMMRETLETPNPDGTGRTCALVTPDQALGR 393

Query: 401  RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            RV   L R+G+  D SAG+PLS     +++      I        +  +VKHPL +F   
Sbjct: 394  RVAARLERWGVIPDSSAGVPLSRLPAGALVDLCARWIADPVQPHLLLAIVKHPLVRFDLG 453

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
            +   + A  ALE  ALRG +         + +  R+                  E    A
Sbjct: 454  DAPQAAAVAALEEHALRGPRPRD-----FAAIRRRLLEAVEPDRRGKAPPEWKRERLSAA 508

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
              LV+ +   I         +    G    +  +  T         D        W   +
Sbjct: 509  TRLVERLQTAIEAATAVFLPQTERNGADLNAAASAFTRLIETLAGQDA-------WAGPD 561

Query: 581  GKTLSSLFSKIIETGSCI-KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
            G+  ++L S +IE G+ + + +  +  ++ T L+    V+       +L ILG +E+RL+
Sbjct: 562  GEAAAALLSGLIEGGASLGRIDQTDLAELTTSLVRETVVRTGGATHPSLRILGAIEARLV 621

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
              D +IL GL EGVWP+    +PFLSR M+  L L   E+ +GQ A DF  A     +I 
Sbjct: 622  RADRMILAGLEEGVWPQAAPTDPFLSRPMRKALGLPPPERRLGQTAQDFVQAACADEVIL 681

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK---KRGQCYLDWTRKLDYTTKQPH--Y 754
              S R    P + SRWL RL +L              R +  LDWTR LD     P    
Sbjct: 682  VHSERRGGQPAVRSRWLWRLEMLTRGAHSAETPIELPRPRTVLDWTRALDAPPPGPPRFA 741

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
            KRP+P PP+  +PR+   + I++ + DPYA+YA  +L L+ +       +   RG   H 
Sbjct: 742  KRPEPRPPVHRRPRSLYVTRIERWVRDPYAIYALWVLGLEAMERPGASAEALARGNAVHA 801

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
             I  L     +    +   ++   +                   L    +    + E + 
Sbjct: 802  AIERLTLDWPDDLPDDCEAVLHDHLLRELGARGFEDAAMAREAPLARNCARWLTDFERRR 861

Query: 875  QSSIEKIFVNIPAKMAI--ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
            ++    I V     M     +    +  FADRI+L   G   + D+KTG  P  +  +  
Sbjct: 862  RARGIDILVEQQGTMTFDAPAGPFTVKAFADRIELASDG-AAVMDFKTGAAPSAKQVKSG 920

Query: 933  IDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
              PQL+L AA L  G F +         L Y+R+  +     +        A +L++ +L
Sbjct: 921  FAPQLTLTAAILADGGFERTNGPVTPDELTYVRVVGRKTAGEVITRASGAEAADLAQAAL 980

Query: 992  KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
              L   V    +   P++S        N    YDHLARV EW    D
Sbjct: 981  DGLKRRVARFDDENTPYVSWAAPQFMGNQGGNYDHLARVWEWSVIGD 1027


>gi|329847171|ref|ZP_08262199.1| double-strand break repair protein AddB [Asticcacaulis biprosthecum
            C19]
 gi|328842234|gb|EGF91803.1| double-strand break repair protein AddB [Asticcacaulis biprosthecum
            C19]
          Length = 999

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 273/1058 (25%), Positives = 432/1058 (40%), Gaps = 108/1058 (10%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             +  P  FTI    PF  ++   L      +           L    I  PT+R  + + 
Sbjct: 8    PSPDPRWFTIPSGRPFLDDLARGLCRSLGKD-----------LPEAQILTPTRRGARAMA 56

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL-SYNLNPPVSNIQRLLELARLILIWR 120
              F   T   + +LP I+++GD+ E +   DL     +L   +S+++R  ELARLI    
Sbjct: 57   RAFSTQTRGGALLLPQIRAIGDLDEGEPPFDLEALGLDLPSAISSLRRRFELARLITEHY 116

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKY-- 177
              L                +S   A+ LA +LA   D +  EE    + LH+L   +   
Sbjct: 117  KGL------------EGRNVSGKLALELADSLAKFFDSLALEEVDATDRLHSLVTGQGGD 164

Query: 178  -------GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGP 229
                      W ++A FL IA + W +RL EL    P   Q+ L+R           K P
Sbjct: 165  QYSLDSWAQHWQVSAQFLAIAVEAWPKRLSELGMMDPSQRQVTLIRRLINQWTEHPPKTP 224

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            +I+AG+TGS P+TA L   VA    GA+VLPGLD  +    W+ I +             
Sbjct: 225  LILAGTTGSAPSTADLAKVVAAASMGAVVLPGLDLSLADDAWDQIED------------- 271

Query: 290  THPQYSLAKLLDFLDIKREDVKRLG----NVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
            +HPQ ++ ++LD  ++ R  V+       +   +   R  +++++  P + +      I 
Sbjct: 272  SHPQGTMKRMLDRHNVARATVRVWPVSLEDDRRKANARRRLLNEALRPAEATKDWRDQIA 331

Query: 346  ENKIPN---IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402
              +  +   I      +  I A  + E A  IA+ +R +L+   K  AL+T D  LARRV
Sbjct: 332  ALRAESDTAIDDGLDGLTEINAARDEEAATVIALLMRETLETPGKTVALVTPDLTLARRV 391

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
               LTR+G+  D SAG PL+ +     L  LL  +    D +AI +L  HP   F     
Sbjct: 392  SARLTRWGLQADSSAGEPLANSPTGRFLLDLLTLLQTPCDPVAILSLWGHPACLFATDPG 451

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                       +         D+  +++ +++R                        A  
Sbjct: 452  ------RTHVEMYGLRGATPNDMDSVRAALIERNR----------------------ATD 483

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            L D     I P+               ISD  +      +            LW    G 
Sbjct: 484  LWDRYAAAILPVAEM-----------PISDLGEAATRITRLAESLSLDDGQALWTGAAGA 532

Query: 583  TLSSLFSKIIETGSCIKAN-AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            + + L + +I  G+    +   +  DI+ +LI    V+        L ILG +E+R++  
Sbjct: 533  SAAELLAGLIREGAGYTVDTLRDVADILGQLIRNGKVRTGGNTHPRLLILGAIEARMVTA 592

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
            D LIL GL EGVWP+    +PFLSR M++ L L + E+  G +AHDF  A          
Sbjct: 593  DRLILAGLEEGVWPQAPDLDPFLSRPMRAALGLPSPERRTGLSAHDFVQAASAPECFLVT 652

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY-----TTKQPHYKR 756
              R    P + SRWL RL  L      D        +LDW R LD              R
Sbjct: 653  RHRREGEPQVQSRWLWRLQTLCKGAKVD--IPSDGRWLDWARALDRGLSDKPAALKPAVR 710

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
            P P PP+EA+P+  S +E++  I DPYA+YA+ +L L  +    +  +   RGT  H  +
Sbjct: 711  PNPKPPVEARPKKLSVTEVEVFIRDPYAIYAKHVLALRPLDRPNEPVEGRQRGTAIHKSL 770

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
               + +            +  ++        L P    + + L   ++  F+  E   ++
Sbjct: 771  ERFVTED-TPLGKAGIDRLCDLLHEELAATRLSPAQMALQKPLLPGMAAEFIRFEADRRA 829

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936
               K+ +    ++ I      L   ADRI+L   G VDI D+KTG  P  +       PQ
Sbjct: 830  HRPKLHIEQRGELKI--GDFTLVAKADRIELRDDG-VDILDFKTGAAPSAKAVAAGFYPQ 886

Query: 937  LSLEAAALKAGSFSQIDCRKV-ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            L+L AA LK G F+ I   +   +L Y+R+         +  +K   A +L++ +L +L 
Sbjct: 887  LTLTAAILKQGGFADIRADRPLGDLLYVRVSPD-VTKPQSAVQKGLFAHDLADAALNSLR 945

Query: 996  EIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033
              +      ++ ++S            +YD LAR+ EW
Sbjct: 946  RRIFAYAEADKGYLSWTAPQFLKTRAGDYDQLARLYEW 983


>gi|85373840|ref|YP_457902.1| helicase [Erythrobacter litoralis HTCC2594]
 gi|84786923|gb|ABC63105.1| helicase [Erythrobacter litoralis HTCC2594]
          Length = 994

 Score =  457 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 244/1067 (22%), Positives = 422/1067 (39%), Gaps = 117/1067 (10%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            P V++IA    F   ++  L+     +      L  LL        P+ RA++ +   FI
Sbjct: 11   PQVYSIAAHRGFADALVAGLVPRYAEDGLGLARLTLLL--------PSTRAMRTVSEAFI 62

Query: 66   EI---TGKKSTILPIIKSLGDVVEEKFTADLLLSY---NLNPPVSNIQRLLELARLILIW 119
                  G K  ++P + ++GD+  ++    LL      ++ P V    R L LA      
Sbjct: 63   RHFGEIGVKGMLMPRMAAIGDLDLDETLGSLLDPLGASDIPPAVDPTYRWLRLAE----- 117

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-----ALKN 174
               L D++ D  P+         A+   LA+  A  +D +  E+   E+L       L +
Sbjct: 118  --VLRDVMGDDAPQG--------ASLFVLARETAQTMDRLLVEDIGPEELLQDRVLDLFD 167

Query: 175  EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIA 233
                  W           ++W   L E  A      +  L    A+    +    PI+ A
Sbjct: 168  RDLAKHWQDNLRRFAKVQQFWLAELGERGALDAAARRNRLFERAAKRWKAEPPATPIVAA 227

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---- 289
            G T + PA ARL+  V+  P GA++LP LD  +  A+W  +        S    ++    
Sbjct: 228  GVTSAAPALARLLRVVSELPQGAVILPDLDLTMDAAVWEELGRAGAPAASGGAPFAKDDA 287

Query: 290  -THPQYSLAKLLDFLDIKREDVKRLG--NVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
             THPQY L  LL+ + + R++++             RS  +S  FLPP+ S +       
Sbjct: 288  VTHPQYHLKLLLNRMGVSRDEIQPWHRKGSGAARSERSHAVSAVFLPPEASKVWV----- 342

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406
              +P+ ++  S + L+E  N   EA ++A+A+R +L E +++ A+IT DRNLARRV   L
Sbjct: 343  -DLPSEKRHLSGIRLMELPNPEAEAQAVALAVRQALAEPERRVAVITPDRNLARRVVHHL 401

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
             R+ I  D SAG PL+ T    +   L   +      + +  L+ HPL + G   +   R
Sbjct: 402  RRWNIEADDSAGRPLAQTTAGRLFLLLAEVMGTNAAPVPLMALLGHPLVRQGEERRQWLR 461

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
               ALE    RG++ +  +  ++ +                         +   +   + 
Sbjct: 462  DLRALERKL-RGSRPAPGLAAIRPVAR-----------------------EAQVIDWWEE 497

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
            +   + PL       +      +++   +                   LW +E+G+ LS+
Sbjct: 498  VEALLGPLAGTDDPLSLADCLDTLAAVGEAL-------------CGEALWAQEDGRALSA 544

Query: 587  LFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
                + +    +       +   I+T  +D   V+P       + I G LE+R+   D +
Sbjct: 545  TVEDLRQHARAVGTQIRRADAHAILTDAMDQVAVRPPYGGHPRVAIYGLLEARMSRADLV 604

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
            I  GLNEG WP   + +P L+  +   L +  A+  IG +AHD   A G   ++ +RS R
Sbjct: 605  ICAGLNEGSWPGRPSVDPLLAPPVLRALGVPGADFRIGLSAHDLAGALGAPEVLLSRSER 664

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
            +   P I SR+L R+  L G       +   +       ++D    +P Y+RP+P P  E
Sbjct: 665  DAEGPAIPSRFLLRVKALLGELLE---RYEERDLPRLAERIDDAPLEPRYQRPEPMPSAE 721

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
             +    S + + +L +DPY  YA  IL+L  +     +P    +G L H+I+    +   
Sbjct: 722  ERRERISVTALDRLRSDPYQFYASAILRLKELDGLDAEPTPAWQGQLAHDILEHWHEHGG 781

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            +         +  I  +   + +  P    +W     K     +  E +       +   
Sbjct: 782  S---------LPDIAKAKLTEMDHHPLTRALWEPRLMKALEW-VASEIEGDMDRTPVLWE 831

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
               +  IE  G+ + G  DR+D L  G   + DYKTG  P     +     QL      +
Sbjct: 832  KWGE--IEHRGVTIFGRIDRLDRLADGTFAVVDYKTGSPPSGSQVEAGYALQLGTLGLMV 889

Query: 945  KAGSFSQIDCRKVANLF-YIRLKQK------------FKIDCITNDKKKYSADELSEKSL 991
              G F++      A+ F Y  L +                  I+  +     +E   K+ 
Sbjct: 890  GKGGFAKHGIHGAASAFEYWSLAKAKSATHETGFGYIETPLKISGKRSGIDPEEFLPKAA 949

Query: 992  KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
              L + ++    G++PF + L     +     YD L R+ EW+   +
Sbjct: 950  DYLDDALSRWVLGDEPFTARLNP--DAPGYDTYDQLMRLDEWQGREE 994


>gi|87200014|ref|YP_497271.1| helicase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135695|gb|ABD26437.1| helicase [Novosphingobium aromaticivorans DSM 12444]
          Length = 993

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 228/1057 (21%), Positives = 412/1057 (38%), Gaps = 102/1057 (9%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
               +P V++IA    F   ++  L+     + F         LA +T+ +P++RA++ + 
Sbjct: 4    ARARPRVWSIAAHRGFADALVAGLVPRYREDRFG--------LARLTLLLPSQRAVRTVT 55

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY----NLNPPVSNIQRLLELARLIL 117
              F+  +G    +LP +  +GD+  ++    LL       ++   V  + RLL +A ++ 
Sbjct: 56   EAFVRASGAG-LLLPRMTVVGDLDLDETLGPLLDPIGAGVDMPEAVDPVWRLLRIAGILR 114

Query: 118  IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN--- 174
                           +         A  +  A+ +A  ID +  E  + E +        
Sbjct: 115  ---------------DELGEDAPGEAALLRQARGIAQGIDRLLVEGVQPERMLDEAVIGI 159

Query: 175  -EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIII 232
              +    W  +          W   L  +        +  L+   A     +    P+I 
Sbjct: 160  AAELSEHWQESTRLFARVFFRWRAELEAIGKVDAPERRNRLLDHAARSWRERPPAHPVIA 219

Query: 233  AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS--TNITSSNTTYST 290
            AG T + P  ARL+ TVA+ P G +VLP LD  +   +W+ +                 T
Sbjct: 220  AGVTSASPVVARLLRTVADMPEGGVVLPDLDLALDPEVWDALGSAGGPDGGLFERGDVVT 279

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNV--SNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
            HPQY L  LL+ + I R++V+       +     RS  IS  FLPP+ S    +      
Sbjct: 280  HPQYHLKLLLNRMGIARDEVQPWHRAGLAAAPPERSRAISNLFLPPEASAAWVSLEAR-- 337

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
                ++  + V ++E  +  EEA +IA+ +R +L E +++ A+IT DR+LA R+   L R
Sbjct: 338  ----ERRLAGVRVMETAHPEEEAQAIAVLVREALKEPERRVAVITPDRSLAARIVAHLGR 393

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
            + I  D +AG PL  T    +L  L   + +    + +  L+ HPL + G          
Sbjct: 394  WNIGADDTAGRPLPQTAAGRLLLQLAEVVAERAAPVPLLALLGHPLVQGGEGRPVWLERV 453

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
              L+LV  RG +    +  ++  V                                  + 
Sbjct: 454  RQLDLVL-RGPRPGPGLPAIRQAVDKTAKR------------------FPALPDWWSGVE 494

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
              + PLV  +         +++ +  +                   LW + +G++L++  
Sbjct: 495  DLLFPLVPLEGAVPLDMALVALVEAGEAL-------------CGTALWAQADGRSLAAFV 541

Query: 589  SKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
             +  +         +  E   ++   ++  +V+P       L I G LE+R+   D +I 
Sbjct: 542  ERWRDAAGDAPAMVDVAELPSLLRDAMEEISVRPPWGGHPRLAIYGLLEARMSRADLVIC 601

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
            GGL EG WP + A +P L+  +   L +  AE  IG +AHD   A G   ++ + + R+ 
Sbjct: 602  GGLTEGTWPGSPAPDPLLAPAILRALGIPGAEFRIGLSAHDLAAALGAPEVVLSHARRDA 661

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
            + P I SR+L R+  + G           +  ++  R L    +   + +P+P P  E +
Sbjct: 662  SGPVIPSRFLLRIHAMLGDQLRIE-----ERAVELARALADADRIAPHPQPRPMPSAEQR 716

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
                + + + +L  DPY  YA  IL L  +     DP    +GT  H+++    +     
Sbjct: 717  RVPIAVTALDRLRGDPYQFYASAILGLRSLDPIDADPTPAWKGTAVHDVLKAWHESGGVP 776

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE-HEEKIQSSIEKIFVNI 885
                    +  + +  F++ +  P +  +W+       H   E  +       E + V  
Sbjct: 777  G------QLVPLAERMFDEMSAHPFMRTMWKPRLVDALHWIEEETDRLAGEGREVLAVER 830

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
              ++ ++  GI + G ADRID L  G + + DYKTG  P  +   +    QL L     +
Sbjct: 831  KGEIVVD--GIRIHGRADRIDRLPDGTLAVVDYKTGKPPSGKMVAEGFALQLGLIGLIAR 888

Query: 946  AGSFSQIDCRKVANLFYIRLKQKFK--------IDCITNDKKKYSADELSEKSLKNLIEI 997
             G    +   +     Y  L +  +            T  +     +E  +++   L E 
Sbjct: 889  GGGMDGV-AGEPTAFEYWSLGRNKERGFGYMKSPVKETARQTGIPREEFLDRTEDYLHEA 947

Query: 998  VTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWR 1034
            +     G +PF + L         S+YD L R+ EW+
Sbjct: 948  IARWLLGSEPFTARLNP--DLPGYSDYDQLMRLDEWQ 982


>gi|119385519|ref|YP_916575.1| putative helicase/exonuclease [Paracoccus denitrificans PD1222]
 gi|119375286|gb|ABL70879.1| putative helicase/exonuclease [Paracoccus denitrificans PD1222]
          Length = 980

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 243/1053 (23%), Positives = 408/1053 (38%), Gaps = 100/1053 (9%)

Query: 1    MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
            M + +  VF +   + F       L+        R     P  +A VT+Y  + +++  L
Sbjct: 1    MPDWQNGVFALPCGADFPGAFAEGLI-------RRMRHHPPQEMARVTVYANSGQSLMAL 53

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
            R   I+                          L+         + + R LEL RLI    
Sbjct: 54   RQALIQRG----------------PLLLPRLRLIADLGGGAATTPLARRLELGRLIDAAL 97

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
               PD+ +               +   LA +LA ++  ++ E    + L  +   ++   
Sbjct: 98   RAQPDLAQGQ-------------SVPELAASLAGLMAEMQLEGLDAQALDRIDASEHAQH 144

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
            W  A  FLKIA+ Y+       +  +        + A         +GP+++AGSTGS  
Sbjct: 145  WGRALAFLKIAAGYYLSD-PPQDREARQRAAAEALAAAWARGEMLPQGPVVVAGSTGSHG 203

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
            AT   M  VA  P GA+VLPG D  +P  +W+ + ++             HPQ   A L+
Sbjct: 204  ATRDFMRAVARLPMGAVVLPGFDADLPQGVWDGLDQR----------SEDHPQARYAPLV 253

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                   E        +     R+ +IS +  P   +D    +    ++  +      + 
Sbjct: 254  AEFGAPAE----WLADTAPDPARNRLISLALRPAPVTDQWIEE--GPRLGPLAPATERLT 307

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            LIEA+   EEA ++A+ +R +++   +   LI ADR L RRV+  L R+GI  D SAG P
Sbjct: 308  LIEAEQPGEEAEAVALIIREAVER-GQPVTLIAADRMLTRRVQSALDRWGIIPDDSAGQP 366

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L  T     L  + +         A+  L+KHP+   G    Y          + L   +
Sbjct: 367  LPLTAPGLFLRHVADLFGAEMMLDALLVLLKHPVTATGLGSDYRREHNRHTRDLELHLRR 426

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
            N     D  +L         ++     W                      +  L+     
Sbjct: 427  NGPAFPDGAALREWADRGDASSKPWALW----------------------LAGLLDRIVP 464

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL--PNLWFEEEGKTLSSLFSKIIETGS-C 597
                     ++D  +      +++            LW +  G    S+   +       
Sbjct: 465  LAQDRAPRPLADRLRDLRALAEDLAAGPGGDAGASELWAKASGGLARSVLDHLAAHAHLG 524

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR----LLNFDTLILGGLNEGV 653
                  E+ D++   + G+ V+  +     +   G  E+R          +IL GLNEG 
Sbjct: 525  HDLRPGEFCDLLYDELQGQAVRQDVAAHPLVRFRGPREARTEAVGKAAGLVILSGLNEGG 584

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
            WP+    +P+LSR M+    L   E+ +G AAHDF+ A G   ++ TR+ R+    TI S
Sbjct: 585  WPQALPPDPWLSRPMRLAAGLTLPERRVGLAAHDFQQAVGAGAVVLTRARRDAEAETIPS 644

Query: 714  RWLQRLLVLGG-------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
            RWL RL+ L G             +++RG+ +LD          +          P    
Sbjct: 645  RWLNRLVNLLGGLPDQQGPQALAEMRRRGRYWLDLAELQARPRIRLAPAPRPSPIPPPPA 704

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN- 825
             R  S +E++ LI DPYAVYARR+L L  +   + +PD  +RG + H+I+   ++   + 
Sbjct: 705  LRELSVTEVRTLIRDPYAVYARRVLGLRALDPLRPEPDAAERGNMLHHIMDRFLRGLPDL 764

Query: 826  -KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             +    +   +  I D   E E   P   + WR     I+   +  E +  +      V 
Sbjct: 765  PETPQAMKARLLAITDEVLEAEVPWPSARLFWRARIAGIADRLMADEAERLARGTPTVVE 824

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
               +  I  +   L    DR+D L  G V + DYK+G  P  +      D QL LEAA +
Sbjct: 825  EYGEQGIPGLDFRLIARPDRLDRLHDGQVHVYDYKSGKPPTDKQI-AHFDKQLPLEAAMV 883

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004
            + G+F  +   +V  + YI+L  + + +              +E++    + ++     G
Sbjct: 884  RHGAFRTLGPAEVEGISYIQLGGEGRTEPREFSAG------FAEETWAGFVTLIRRYLGG 937

Query: 1005 EQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            E+ F + L + E+S+  S+YDHL+R  EW    
Sbjct: 938  ERGFTARLAM-ERSDHASDYDHLSRHGEWDTTE 969


>gi|114328673|ref|YP_745830.1| ATP-dependent nuclease subunit B [Granulibacter bethesdensis CGDNIH1]
 gi|114316847|gb|ABI62907.1| ATP-dependent nuclease subunit B [Granulibacter bethesdensis CGDNIH1]
          Length = 976

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 275/1054 (26%), Positives = 448/1054 (42%), Gaps = 102/1054 (9%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             + +I P  PF   +  A L             +PL  A   I +PT+RA + L   F+ 
Sbjct: 2    RITSIPPDWPFLDTVASAWL--------GKGEQSPLDTADGIILLPTRRAARALADAFLR 53

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
            I+  +  +LP I +LG + E           +L P V   +RL EL RLIL   +     
Sbjct: 54   ISNGRPLLLPRITALGALDETPLALHGA--LDLPPAVDTPRRLAELTRLILALPD----- 106

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED-LHALKNEKYGMWWLLAA 185
                         +S  NA  LA+ LA ++D            L    +  +   W    
Sbjct: 107  -----------PALSADNAWMLARELAKLLDEAARAGIDLATSLPDAVDPSFAAHWQTTL 155

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIPATAR 244
             FL+I ++ W + L E   + P   Q AL+R +A H         +  AG +G+ PA A 
Sbjct: 156  TFLQIVTRAWPDWLAEEGLTDPAARQAALLRIQATHWQDHPPATRLWAAGISGAAPAEAM 215

Query: 245  LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
            L+ T+A    G ++LPGLD  +P   W  +              ++HPQ  +  LL  +D
Sbjct: 216  LLKTIARLKQGLVILPGLDMTMPEEAWGMLE-------------ASHPQAGMRDLLAMMD 262

Query: 305  IKREDVKRLGNVSNE--MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
             +R+DV   G          RS ++ ++ LP +   +                   V  +
Sbjct: 263  ARRDDVAPWGLTPPPSRPADRSRLLHQALLPAEALTLWR--------ETTPPSSESVFRL 314

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            EA++E++EA++IA+ LR +L+   +++ALIT DR LA RV  EL RFG+  D SAG PL+
Sbjct: 315  EAEDEQQEAVAIALILRDALETPGRRAALITPDRGLAVRVSTELARFGVIADDSAGEPLA 374

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             T  +  L  L   +      +++ +L+KHP+   G        A   LE  ALRG +  
Sbjct: 375  ETPPALFLRLLAETVRSGFSPVSLLSLLKHPMTALGMDRLMTLHAARGLEQHALRGPRPP 434

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
              +  L++++                     E  K  A  L+D + Q + PL+     + 
Sbjct: 435  PGLSGLRAVL---------------------EAGKTEAAALIDRLEQVLHPLIDLVAQEK 473

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA-N 601
                         L          D H     LW  EEG+ L+ L ++ +   + +    
Sbjct: 474  ----LAPHDYLRALLTAGEAVAASDTHSGAERLWALEEGEALAVLLAETLPALTVLPPQP 529

Query: 602  AIEWIDIITRLIDGETVKPK---------IEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
                  +   +++G  V+ +           +   LFI G LE++L + D  +LGGL+EG
Sbjct: 530  PDTLPGLFDAVLEGIAVRSRRALRRFGENDAEHPRLFIWGLLEAQLQHVDVAVLGGLSEG 589

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRENNIPTI 711
            VWP  T   P++SR M+S + L +AE+ IGQAAHDF  A  +  + I +   R    P +
Sbjct: 590  VWPPATDPGPWMSRPMRSRVGLPSAERIIGQAAHDFVQAVCSASVAILSCPARREGAPVV 649

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
             +RWL R+  L                  W   LD   +    + P+P PP  ++PR+ S
Sbjct: 650  TARWLARIDALLKGH---GKHLPTHPATAWAGILDQPERPAPVRPPRPCPPRRSRPRSLS 706

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-E 830
             +EI + ++DPY VYA RILKL  +   ++D D  D G + H+ +   ++    +    +
Sbjct: 707  VTEIGRWLSDPYRVYAERILKLKPLDPLEQDTDAADFGMIVHDGMQCFLENAARQWPDGD 766

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
            +   ++       ++ N  P +   W     +I+      E++      KI         
Sbjct: 767  LPAALRTAFRVALDRHNPRPALRSWWLPRLDRIAAWVATREQRD----TKIHTETSGIWH 822

Query: 891  I---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            +         L G ADRI++ + G + + DYKTG  P          PQL LEAA +KAG
Sbjct: 823  LSAFPGGPFTLKGRADRIEIRQDGSIRLLDYKTGTVPSAPAILSGEAPQLPLEAAMMKAG 882

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDC---ITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004
            +F  +  +  + L Y RL           +        A+E ++ + + L ++V    + 
Sbjct: 883  AFPDVPAQYPSELVYWRLSGGRVAGEEIILGRKAPAAWAEEQAQLAAEKLRDLVMRYDDP 942

Query: 1005 EQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
            + P+++       + +   Y HLARV EW +  +
Sbjct: 943  DFPYLAQPFAPGHAPM-DAYAHLARVPEWADGDE 975


>gi|114800509|ref|YP_760585.1| hypothetical protein HNE_1884 [Hyphomonas neptunium ATCC 15444]
 gi|114740683|gb|ABI78808.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 1017

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 262/1054 (24%), Positives = 435/1054 (41%), Gaps = 82/1054 (7%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63
              P + TIAP + F +E+  AL   T +         P  LA   IYVP +R+ + L   
Sbjct: 10   DAPRIRTIAPGTAFVKELARALAAETSLA------TKPDALADAIIYVPNRRSARALSLA 63

Query: 64   FIEITGKKSTILPIIKSLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
              +  G+++ + P I++LGD+   E             PP+S  ++L  LA L+  +   
Sbjct: 64   LYDAAGEQTILPPDIRALGDLDSGEPPPIAEQALSGAAPPLSGAKQLGVLATLVRHYYQ- 122

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE-TEEKKWEDLHALKNEKYGMWW 181
                       + +   + PA+A+  A+ L  +++    +E   W  L  L        W
Sbjct: 123  -----------NAMGTELPPASALSAARELGRLLEQAAMSENADWSKLETLSLGDMAAHW 171

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIP 240
              +ADFLKI ++ W E L E  AS P   ++   RA A+H       GP+IIAGSTG+ P
Sbjct: 172  SRSADFLKIVTELWPEWLAEHRASDPYKERLRAARALADHWRDAPPAGPVIIAGSTGATP 231

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                LM  V + P G IVLPGLD  +    W ++ +              HPQ +L + L
Sbjct: 232  PGRILMRAVLDLPQGLIVLPGLDTLLNDKQWESVIKA-----------PGHPQNTLIRTL 280

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSM--VISKSFLPPDTSDMRNTDILENKIPN------- 351
              L    E V     +S +   R+   +I ++  P + +      + E    +       
Sbjct: 281  RALGRAPESVAPWPGISEDGPARARVRLIHEALAPAEETADWRATLEELAAASNQPIEEF 340

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
            ++   + +++    NE  EA + A+ +R +L+   + +AL+T D  LARRV   L R+GI
Sbjct: 341  VRDGLTGLSIANTPNEAAEAEAAALLMRETLEREGQTAALVTPDAGLARRVSALLGRWGI 400

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
            ++  SA +PL  T   S++           +   +A ++KHP  +              L
Sbjct: 401  HVPPSAPVPLGRTQAGSLIGLCARWAADPGEPAVLAAVLKHPFVRKKMDSG-------LL 453

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
            +L  LRG +    + DL   +  R        H     S    ED++ A+LLV  + + +
Sbjct: 454  DLYFLRGPRRWKSLDDLAHSIDIR--------HKLEPHSPFKREDQDEAILLVQRLSEIM 505

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
                   +  +    + +      L     +          P  W  E+G   S+L  ++
Sbjct: 506  EESGADFSILDGVTADAAAKRVADLAGAISET---------PMPWAGEDGAGASNLLQRL 556

Query: 592  IETGSCI-KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
             E G  + + +   + D++        V+    +   L I G LE+RL + D LIL GLN
Sbjct: 557  AELGPFLGEMSPEAFADLVDAESSNLPVQTGEPEHPRLSIWGPLEARLQSADRLILAGLN 616

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
            E VWP+    + FL R  ++ L L   E+ +G +AHDF       H++   + R ++ P+
Sbjct: 617  EDVWPEKPPADAFLPRRFRAPLGLNDPEERMGLSAHDFAQLAAAPHVVMLSAARRDDSPS 676

Query: 711  IASRWLQRLLVLGGTDF----FDNLKKRGQCYLDWTRKLDY----TTKQPHYKRPKPFPP 762
            + SRW+ RL  L    F     + LK      LDW   L      T        P P   
Sbjct: 677  VESRWVWRLRTLAEGAFGDRTAELLKGETGALLDWVSALQTRGVGTLPADFSAEPTPRKR 736

Query: 763  LEAQPR-TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
              A+     S + + +L  DPY+++A  +L L  +           RGT  H  +    K
Sbjct: 737  TPAEWPTRLSVTRVDRLQRDPYSIWAESVLGLRQVDVLGAPLASNLRGTAIHAALDAFEK 796

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
            + + K+   +  L++  +    E E+       IW      ++  +LE         + +
Sbjct: 797  EGVAKDAGSLLELIRVELARTGEPESSWAGRLAIW----QDVADWYLEWRASRDIGGKFV 852

Query: 882  -FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
              V     + I      L+  ADRI+   +G + I D+KTG  P  +      D Q+ L+
Sbjct: 853  REVRGEISVEIAGHPFELSATADRIERTATGELVIVDFKTGQPPTDKAIDAGYDQQMPLQ 912

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN-DKKKYSADELSEKSLKNLIEIVT 999
            A     G F  +    VA L Y+ ++ + +   I        + +EL   +    + +V 
Sbjct: 913  AIIASKGGFKNVRAAPVAALEYVAIRGRPEARRIAESKNSPKTLEELIAAAADGYVRLVA 972

Query: 1000 LLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033
              ++ E  F S  R+         Y+ LAR AEW
Sbjct: 973  AYRDPEAVFASAPRVQFVKYDYG-YNLLARRAEW 1005


>gi|218682570|ref|ZP_03530171.1| double-strand break repair protein AddB [Rhizobium etli CIAT 894]
          Length = 898

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 345/927 (37%), Positives = 481/927 (51%), Gaps = 47/927 (5%)

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
            NKLPDI++ ++ +SPL  P SPA+AIWLA+NLA++ID IETE+  W +L  L    Y  W
Sbjct: 1    NKLPDIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWSELTKLDTGDYAAW 60

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSI 239
            W L A+FL+IAS +W ERL EL  SSP  ++ A++RAEA  L      GPIIIAGSTGS+
Sbjct: 61   WQLTAEFLQIASAFWPERLSELGKSSPARHRNAILRAEASRLSATKPAGPIIIAGSTGSV 120

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            PATA L++ VAN P G IVLPGLD  +P   W  +  +      +N    +HPQY L+ L
Sbjct: 121  PATADLIAAVANMPEGVIVLPGLDLSMPEKDWQMVAPEPAPGQHANPASRSHPQYGLSSL 180

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            L  L + R DV  L     ++  R+ V+                    +          +
Sbjct: 181  LKRLKLTRADVTLLDRPEADLERRAEVL---LSGAHAIGGDQRLGGMEERAAWAGSVFSL 237

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
                AD  R+ A           D +  ++   T +    RR        G         
Sbjct: 238  RRCFADRSRQRA--------RGSDRDCHRAPACTGEAGTGRREPGGSDHAGP-------- 281

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
                                       A  ++HP  +FG        A  A  + A    
Sbjct: 282  ------------------QSRPAGDGRAFPLRHPRRRFGGHTACGDAAGYAAAIAAGSSA 323

Query: 480  KNSYDIMD--LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                   D          +                +E   +LA  +        + L+ +
Sbjct: 324  AAGRSGGDRLAAQTSAGPLRPGPRRIDFQALAPDAAEAAYDLARRVTRATEPLASALLRH 383

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
            +        + ++S+W + T   L+ V  D    L +LW  E G  L++L  ++I+T   
Sbjct: 384  RPEDRGRTVSFTLSEWAERTGRSLEAVAADSRGNLADLWSGEAGDALAALLGEVIDTDGQ 443

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            I+A+  +WIDI+  L  G  VKP+      LFI GTLE+RL + DTLILGGLNEG WP  
Sbjct: 444  IEADGPQWIDIMAALAAGHAVKPRALSHPRLFIFGTLEARLQSVDTLILGGLNEGTWPGQ 503

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            TA NPF+ R+M++++ L+  E+ IGQ AHDFEMANGTRHLIY+RSLR+ + PT+ASRWLQ
Sbjct: 504  TANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRSLRQGSTPTVASRWLQ 563

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RLL L G  F   LK RG  +L W   +D    Q   +RP P PP+  QP +YSFSE+ +
Sbjct: 564  RLLALAGEAFESELKGRGNRFLRWAALIDRDEAQAPAQRPSPKPPVALQPTSYSFSEVGR 623

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DPYA+YARRIL+LD +  F +DP   +RGTL+H II   I++     TP+    M++
Sbjct: 624  LRRDPYAIYARRILRLDPVDAFNRDPGAAERGTLYHKIIDRFIREAHVAGTPDAAAAMER 683

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
            I+   F+ E+LPPHID +WR  F  ++ +FLE E + +  I K    +   + +E+I I 
Sbjct: 684  ILSELFDMEHLPPHIDAVWRPRFRAVARAFLEWEAERRPGIRKTLTEVRGGVELEAINIR 743

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
            LTG ADRID+      DI DYKTG NP    A+ L+DPQL+LEAAAL AG+F        
Sbjct: 744  LTGVADRIDVTGPNAADIIDYKTGYNPSPAQARVLLDPQLALEAAALSAGAFRDAGSLVP 803

Query: 958  ANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
             +L Y+RL+   +        +      K  SA +L+E+SL  L++ V LLQ+GE+ F S
Sbjct: 804  QDLLYVRLRPGRRFQVDTVNNESAARSDKTKSAMDLAEESLDQLVKFVGLLQSGEKGFTS 863

Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEY 1037
             L  +++ +   +YDHLARV+EW    
Sbjct: 864  RLIPAQQFDFGGDYDHLARVSEWSTAE 890


>gi|197103667|ref|YP_002129044.1| hypothetical protein PHZ_c0201 [Phenylobacterium zucineum HLK1]
 gi|196477087|gb|ACG76615.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 1001

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 264/1049 (25%), Positives = 438/1049 (41%), Gaps = 77/1049 (7%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            P  F I    PF  ++   L      +        P  L+   + +PT+R  + +   F+
Sbjct: 10   PRWFNIPAHRPFAEDLARGLYEALADDG-------PEALSDALVLLPTRRGARAVADAFV 62

Query: 66   EITGKKSTILPIIKSLGDVVEEKFTADLLL-SYNLNPPVSNIQRLLELARLILIWRNKLP 124
               G ++ + P ++ LGD+   +   +    + +L   +  ++R  EL RL+      LP
Sbjct: 63   RAAGGRAVLPPQMRPLGDLEAGEPPFEPGDLALDLPAAIDPLRRRFELTRLVAGHWRLLP 122

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLL 183
                           ++ + A+ LA  L   +D ++ EE +  E L  L        W +
Sbjct: 123  GRE------------LTASAALELADALGAFLDSLQIEEAEAGEKLAGLVEADLAEHWRV 170

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPAT 242
            + +FL+ A   W  RL EL        ++ L+R  A+    +  +G ++ AGSTG+ PAT
Sbjct: 171  SREFLETALTEWPRRLAELGLVDVSERRVRLLRRLADVWASRPPQGVLVAAGSTGTAPAT 230

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
            A L++ +A  P GA+V+PGLD  +  + W  +                HPQ +L +LL  
Sbjct: 231  ADLLAVIAAAPRGAVVVPGLDDSLAESAWREVD-------------EQHPQGALRRLLAR 277

Query: 303  LDIKREDVKRLGNVSNEM---YGRSMVISKSFLPPDTSDMR-------NTDILENKIPNI 352
              I R+ V+              R  VI+++  PP  +            +     +  I
Sbjct: 278  TGIDRKHVEVWPAALAHQTQGRWRRRVINEALRPPRATADWLHAIEQLRAEADAEGLDPI 337

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
             +    ++L+ A  E E A   A+ LR +L+  +K +AL+T D+ LARRV  +L R+G+ 
Sbjct: 338  AEGLKGLSLVSARAEEEAATVAALLLREALETPEKTAALVTPDQVLARRVTAKLARWGVV 397

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
             D SAG PL+      +   +  A       + +  L+KHP  + G     L+R ++ LE
Sbjct: 398  PDSSAGEPLAGCRCGVLAGLVARAAVDPLAPVTLLALLKHPYVRLGLDGDDLARRRDVLE 457

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
               LRG +       L++ + ++                                   + 
Sbjct: 458  RHGLRGARPW-TWAGLRARLAEKGRGLDALP--------------------------LVD 490

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
             L    +   + C    +++  +     ++ +          LW    G+ +S L + +I
Sbjct: 491  RLEDLLSALQAACAEGPVAEAARAVTAAMEALAAGADGSTGELWAGHGGEAMSRLLAGLI 550

Query: 593  -ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
             ETG     +A  + D+++RL++GE+V+        L ILG +E+RL+  D L++ GL E
Sbjct: 551  HETGGVPPVSARGFADLLSRLMEGESVRAGGATHPRLRILGAIEARLVRADRLVVAGLEE 610

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
            GVWP+    +PFLSR M+  L L   E+ +G +AHDF  A     +I   S R    P +
Sbjct: 611  GVWPRGAPLDPFLSRPMRRTLGLPPPERRVGLSAHDFAQAACAAEVILLHSERREGQPAV 670

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
             SRWL RL  L      +         L W R LD        +RP P PP+EA+PR   
Sbjct: 671  KSRWLWRLETLARGAAVE--IPGRPEALAWARALDAPDDYRPARRPAPCPPVEARPRELF 728

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             + ++ L  DPYAV+AR IL L  +    +  +   RGT  H               P+ 
Sbjct: 729  VTRVETLTRDPYAVWARDILNLRPLERPDEPVEARARGTAIHAAFERFALDHPRDLPPDA 788

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK--M 889
              + + +     EK  +P         L  + +    E E + ++    I V    +  +
Sbjct: 789  AAIFEAMYVEELEKAGMPREALARESALAREAAAWVAELEARRRADGRAIHVEKTGRLAI 848

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
             ++   + L   ADRI+    G+  I DYKTG  P ++       PQL+L AA L  G F
Sbjct: 849  RVDGHEVVLGAKADRIEADPQGYGHILDYKTGRAPSQKVVDAGFSPQLTLTAAILAHGGF 908

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
              I       L Y+ +  +              + E +E++L     ++      +QP++
Sbjct: 909  DAIGPLVPGELVYLEVTGRRPAGREEVRAGVGESAEAAERALDGARRLLARYFRPDQPYV 968

Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
            S           S+YDHLARV EW    +
Sbjct: 969  SRTAPQFVKTYASDYDHLARVFEWSTSGE 997


>gi|162146538|ref|YP_001600997.1| hypothetical protein GDI_0714 [Gluconacetobacter diazotrophicus PAl
            5]
 gi|161785113|emb|CAP54657.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl
            5]
          Length = 1014

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 257/1055 (24%), Positives = 416/1055 (39%), Gaps = 72/1055 (6%)

Query: 8    VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67
            V TI P  PF   +                  +P       I +P++RA + L   F+  
Sbjct: 4    VVTIPPHVPFLDAVAT--------RWMAEIADDPQRSGDGLILLPSRRAARALTEAFLRH 55

Query: 68   TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
               +  +LP I  +G + E         + +L P V  ++RL  L RLIL   +   D+ 
Sbjct: 56   ADGRPMLLPRIAPIGSLDESALALSGQEALDLPPAVEPLRRLATLTRLILQAGDAFGDV- 114

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAAD 186
                         +   A  LA+ LAD++D  E  E    E L A     +   W L   
Sbjct: 115  ------------RTIDQAWPLAQALADLMDDAEWAECDLAERLPAAAEGDFAEHWHLTLR 162

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT---KGPIIIAGSTGSIPATA 243
            FL I +  W   L E    +P   Q+AL+ A+A             +   G T ++P+  
Sbjct: 163  FLSIVTGIWPAWLAEEGVMNPAARQVALLHAQARRWHASPLPGGERLWAVGFTDAMPSVL 222

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             ++  V   P G +VLPG+D  +  A W  + +              HPQ  +A+LL  +
Sbjct: 223  AVLDAVLAMPGGRLVLPGVDLSLDEATWTALPD-------------GHPQAGIARLLAGV 269

Query: 304  DIKREDVKRLGNVSNEM---YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
               R D+ + G+ S +       +            + +    + E            ++
Sbjct: 270  GRNRADLAQWGDPSGDAGSGDAGAACPVDRGAVLARALLPAAALGEWLRDTTPVAMDGLS 329

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            ++ A +++EEA +IA+ LR ++ E   ++AL+T DR LA RV +EL R+G+  D SAG P
Sbjct: 330  VLRAADQQEEAAAIALLLRQAIAEPGHRAALVTPDRGLAGRVAVELARWGVVADDSAGEP 389

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L  T  +  L  ++ A       +A+ +L+KHPLA  G        +   LE   LRG  
Sbjct: 390  LGATPPAIFLRLVVQAATGGLSPVALLSLLKHPLAACGLSPGACRASARLLERALLRGPA 449

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                I  L+  +              H       +  E     VD + +C+ PL+T    
Sbjct: 450  PRPGIDGLRDRLAVARDDA-------HGALADRPDAPEDLAGFVDRVERCLAPLLTLVAA 502

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                     ++   +                   LW  E+G  L    + +I     + A
Sbjct: 503  PAPGPVADLLAGLVEAAEALATTDDRAGAD---RLWAGEDGNALGQHLAALIAFCDVLPA 559

Query: 601  NAIEWID-IITRLIDGETVKPKI--------EKSSTLFILGTLESRLLNFDTLILGGLNE 651
                 +D ++   + G+TV+ +              +FI G +E+RL   +T++LG L E
Sbjct: 560  QGATILDGLLAASMAGQTVRSRRGLRGRDATALHPRIFIWGLMEARLQAVETMVLGALVE 619

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENNIPT 710
             VWP  T   P++SR M++ + L + E+ IGQAAHDF   A     ++ +   R +  PT
Sbjct: 620  TVWPPATDPGPWMSRPMRARVGLPSPERAIGQAAHDFVACACAAPRVVLSVPGRRDGAPT 679

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT- 769
            + +RWL RL                   L W  +LD     P    P    P  A     
Sbjct: 680  VPARWLVRLDAFLAGRDQA---LAAHPALSWLSRLDRPVDAPRPVAPPRPRPPLAARPRA 736

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             + +EI+  + DPYA++AR IL L  +   ++  D  D GT+ H  +    ++ + + + 
Sbjct: 737  LTITEIETWMRDPYAIHARHILGLRRLKEIEEPADAADYGTIVHAALDRWFRQPVERRSA 796

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI---QSSIEKIFVNIP 886
                 ++           L P +   W     +I+   ++ E      Q+          
Sbjct: 797  AGEAGLRATFAEELAAARLRPALAAWWAPRLARIAAWVVQAEAARASGQAGAVVTRTERS 856

Query: 887  AKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
              + +         L G ADRID    G + + DYKTG  P++++       QL LEAA 
Sbjct: 857  GTVELSGLPGGPFVLRGRADRIDRNGDGGLTLIDYKTGTLPRRKSVFAGWSSQLVLEAAM 916

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
             + G+F      +   L Y RL    +             D+L   S  NL  ++ +  +
Sbjct: 917  AERGAFGAELAGRARELLYWRLTGGPEAGEDLPVATGQELDDLIAASWDNLRGLIAMYDD 976

Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
              QP++SH    E      +Y  LARVAEW    D
Sbjct: 977  PAQPYLSHPHPEEGPRFA-DYARLARVAEWSAARD 1010


>gi|209543464|ref|YP_002275693.1| double-strand break repair protein AddB [Gluconacetobacter
            diazotrophicus PAl 5]
 gi|209531141|gb|ACI51078.1| double-strand break repair protein AddB [Gluconacetobacter
            diazotrophicus PAl 5]
          Length = 1014

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 257/1055 (24%), Positives = 416/1055 (39%), Gaps = 72/1055 (6%)

Query: 8    VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67
            V TI P  PF   +                  +P       I +P++RA + L   F+  
Sbjct: 4    VVTIPPHVPFLDAVAT--------RWMAEIADDPQRSGDGLILLPSRRAARALTEAFLRH 55

Query: 68   TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
               +  +LP I  +G + E         + +L P V  ++RL  L RLIL   +   D+ 
Sbjct: 56   ADGRPMLLPRIAPIGSLDESALALSGQEALDLPPAVEPLRRLATLTRLILQAGDAFGDV- 114

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAAD 186
                         +   A  LA+ LA+++D  E  E    E L A     +   W L   
Sbjct: 115  ------------RTIDQAWPLAQALAELMDDAEWAECDLAERLPAAAEGDFAEHWHLTLR 162

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT---KGPIIIAGSTGSIPATA 243
            FL I +  W   L E    +P   Q+AL+ A+A             +   G T ++P+  
Sbjct: 163  FLSIVTGIWPAWLAEEGVMNPAARQVALLHAQARRWHASPLPGGERLWAVGFTDAMPSVL 222

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             ++  V   P G +VLPG+D  +  A W  + +              HPQ  +A+LL  +
Sbjct: 223  AVLDAVLAMPGGRLVLPGVDLSLDEASWTALPD-------------GHPQAGIARLLAGV 269

Query: 304  DIKREDVKRLGNVSNEM---YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
               R D+ + G+  ++                    + +    + E            ++
Sbjct: 270  GRNRADLAQWGDPPHDAGSGDAGMACPVDRGAVLARALLPAAALGEWLRDTTPVAMDGLS 329

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            ++ A +++EEA +IA+ LR ++ E   ++AL+T DR LA RV +EL R+G+  D SAG P
Sbjct: 330  VLRAADQQEEAAAIALLLRQAIAEPGHRAALVTPDRGLAGRVAVELARWGVVADDSAGEP 389

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L  T  +  L  ++ A       +A+ +L+KHPLA  G        +   LE   LRG  
Sbjct: 390  LGATPPAIFLRLVVQAATGGLSPVALLSLLKHPLAACGLSPGACRASARLLERALLRGPA 449

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                I  L+  +              H       +  E     VD + +C+ PL+T    
Sbjct: 450  PRPGIDGLRDRLAVARDDA-------HGALADRPDAPEDLAGFVDRVERCLAPLLTLVAA 502

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                     ++   +                   LW  E+G  L    + +I     + A
Sbjct: 503  PAPGPVADLLAGLVEAAEALATTDDRAGAD---RLWAGEDGNVLGQHLAALIAFCDVLPA 559

Query: 601  NAIEWID-IITRLIDGETVKPKI--------EKSSTLFILGTLESRLLNFDTLILGGLNE 651
                 +D ++   + G+TV+ +              +FI G +E+RL   +T++LG L E
Sbjct: 560  QGATILDGLLAASMAGQTVRSRRGLRGRDATALHPRIFIWGLMEARLQAVETMVLGALVE 619

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENNIPT 710
             VWP  T   P++SR M++ + L + E+ IGQAAHDF   A     ++ +   R +  PT
Sbjct: 620  TVWPPATDPGPWMSRPMRARVGLPSPERAIGQAAHDFVACACAAPRVVLSVPGRRDGAPT 679

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT- 769
            + +RWL RL  L                L W  +LD     P    P    P  A     
Sbjct: 680  VPARWLVRLDALLAGRDQA---LAAHPALSWLSRLDRPVDAPRPVAPPRPRPPLAARPRA 736

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             + +EI+  + DPYA++AR IL L  +   ++  D  D GT+ H  +    ++   + + 
Sbjct: 737  LTITEIETWMRDPYAIHARHILGLRRLKEIEEPADAADYGTIVHAALDRWFRQPAERRSA 796

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI---QSSIEKIFVNIP 886
                 ++           L P +   W     +I+   ++ E      Q+          
Sbjct: 797  AGEAGLRATFAEELAAARLRPALAAWWAPRLARIAAWVVQAEAARASGQAGAVVTRTERS 856

Query: 887  AKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
              + +         L G ADRID    G + + DYKTG  P++++       QL LEAA 
Sbjct: 857  GTVELSGLPGGPFVLRGRADRIDRNGDGGLTLIDYKTGTLPRRKSVFAGWSSQLVLEAAM 916

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
             + G+F      +   L Y RL    +             D+L   S  NL  ++ +  +
Sbjct: 917  AERGAFGAELVGRARELLYWRLTGGPEAGEDLPVATGQELDDLIAASWDNLRGLIAMYDD 976

Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
              QP++SH R  E      +Y  LARVAEW    D
Sbjct: 977  PAQPYLSHPRPEEGPRFA-DYARLARVAEWSAARD 1010


>gi|148555592|ref|YP_001263174.1| double-strand break repair protein AddB [Sphingomonas wittichii RW1]
 gi|148500782|gb|ABQ69036.1| Double-strand break repair protein AddB [Sphingomonas wittichii RW1]
          Length = 991

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 254/1047 (24%), Positives = 400/1047 (38%), Gaps = 88/1047 (8%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            +P VFTI     F   +   L+             +PL LA   + VP  RA + +   F
Sbjct: 3    RPAVFTIPAHRAFADALAAGLIARH--------GPDPLGLARTVVLVPNNRAARAISDAF 54

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-------LNPPVSNIQRLLELARLIL 117
            +        +LP + ++GD   ++    LL   +       + P +  ++R + LARL  
Sbjct: 55   VRRAEGG-LLLPRLVAIGDPELDERLGGLLDPIDADAEEEPIPPAIDPLERQMILARLTA 113

Query: 118  IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-EK 176
              R    D             PI    AI LA  L   +D +  E+     L  L    +
Sbjct: 114  EARQAAGD-------------PIDGGEAIRLAGELGRTLDQMLIEQIPAARLRDLVALPE 160

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGS 235
                W  +   L      W   L           +  L+   A     +   G +I AG 
Sbjct: 161  LSEHWQRSLAMLDTILTRWPAELAARGRIDLAERRNRLLDRVARRWRHRPPPGAVIAAGI 220

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY--STHPQ 293
            + + PA ARL+  VA  P G +VLPGLD     A W  +    T    +       +HPQ
Sbjct: 221  SSTTPAVARLLGVVARLPEGMVVLPGLDTVSDEAEWRALGPHETGEDGARPPRPVESHPQ 280

Query: 294  YSLAKLLDFLDIKRED--VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
            Y+L +LLD +D+ R +    R G   +    R+  I+ +  P   +D  +       +P 
Sbjct: 281  YALKRLLDRMDVGRGEVATWRWGGGRDARSVRARAIANAMAPAAFTDKWHR------LPP 334

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
             ++  S V  IE  N  EEA  IA+ALR +++   + +AL+T DR LARRV   L R+GI
Sbjct: 335  AERRLSGVRAIELANPAEEAQVIALALREAIETPGRTAALVTPDRVLARRVTAHLARWGI 394

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              D SAG PLS T   ++L ++  A  +    + +  L+KHPL + G            L
Sbjct: 395  VADDSAGTPLSLTPAGTLLLAVAEAAAEGFAPVPLLALLKHPLVRRGAARGAWLDGARKL 454

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
            ++   RG +    +  +                        +   +  A+   D +   +
Sbjct: 455  DIAL-RGPRPPAGLDGIA--------------RYLRDGDGHARRARAPAIDWWDEVRPLL 499

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             PL    + +       ++ +              D       +   E    +       
Sbjct: 500  EPLEKAFSARTLAELLAALRETISTLADDAGWSGPDGRAAADLVAELEAWAPI------- 552

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                     +       +  L+D   V+P       L I G LE+RL + D ++LGGLNE
Sbjct: 553  ----GPAAFDPAGLAPTLRLLMDAVAVRPPQGGHPRLSIWGLLEARLQHADLMVLGGLNE 608

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
            GVWP   + +P+L+  ++++L L   E  IG +AHDF MA G   LI TR+ R+   PTI
Sbjct: 609  GVWPALPSPDPWLAPRIRAELGLPGLETRIGLSAHDFAMALGAPELIVTRARRDARAPTI 668

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            ASR+  RL  + G         R     +W   +D    +    RP+P PP+  +P   +
Sbjct: 669  ASRFWLRLEAMTGG------ITREHRLPNWAAAIDRPADRRFIARPEPAPPVADRPNVIA 722

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             + + +L  DP+A YA  +L+L  +     DP    RGT  H +    +K+         
Sbjct: 723  VTRLDRLQADPFAFYADAMLRLRPLDAVDADPTPAWRGTAVHAVFEAWMKQ-----DDCD 777

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE-KIQSSIEKIFVNIPAKMA 890
               +    ++        P +  +W     +      +    +       I   +  ++ 
Sbjct: 778  PDRLLPRAEAMLRDMAAHPVMQALWEPRLIEALRWVADRMREERAQGRRPIAAELDGRVE 837

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            +   GI LTG  DRID L  G + I DYKTG  P     +     QL L       G F 
Sbjct: 838  VA--GITLTGKVDRIDRLADGTLAIVDYKTGKPPSAAQVEAGYAMQLGLLGLIADRGGFD 895

Query: 951  QIDCRKVANLFYIRLKQKFK----IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
             I         Y  L +       +      K   +  +    +   L   V     G +
Sbjct: 896  GI-EGTPLAFEYWSLAKDRDAFGQVRSPVGGKSHVAPQDFVAHAAAILASAVERWLTGTE 954

Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEW 1033
            PF + L         ++YD L R+ EW
Sbjct: 955  PFTAKLAPEYSP--YADYDQLMRLDEW 979


>gi|332185717|ref|ZP_08387464.1| double-strand break repair protein AddB [Sphingomonas sp. S17]
 gi|332014075|gb|EGI56133.1| double-strand break repair protein AddB [Sphingomonas sp. S17]
          Length = 984

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 256/1051 (24%), Positives = 408/1051 (38%), Gaps = 97/1051 (9%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63
            ++P + TI     F   ++  L         R    +PL LA   I +PT R ++ +   
Sbjct: 5    RRPRLHTIPAHRGFADALVAGL--------MRRTGGDPLTLAQGMILLPTNRGVRAVTEA 56

Query: 64   FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ----RLLELARLILIW 119
            F+  +G    ILP + +LGD    +     L   +   P         R + LARL+   
Sbjct: 57   FVRASGGG-LILPRMVALGDPELGEAAGSALDPADAEAPPPPAIAPSARRMILARLVEEE 115

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK-NEKYG 178
            R +                P++ A A+ LA +LA  +D +  EE +  +L AL    +  
Sbjct: 116  RKR-------------AGQPVTAAEAVRLAGDLARTLDQMLIEEVEPAELAALDLGPELT 162

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTG 237
              W  A     +    W   L  +        +  L              G +  AG T 
Sbjct: 163  EHWQAALQTFSVVLDRWPAILARMGRIDAARRRTLLFDRIVTRWRDQPPAGFVCAAGVTD 222

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN--TTYSTHPQYS 295
            + PA AR++  V+  P G++V  GLD  +P   W+ +     +  +     +  THPQY+
Sbjct: 223  TAPAVARVLRCVSEMPGGSVVFAGLDLTMPAEEWDALGPHKPDPVTGRIRRSIETHPQYA 282

Query: 296  LAKLLDFLDIKREDVKRL--GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            L  LLD + + R++V     G   +    R   I+ +  P D +           +P   
Sbjct: 283  LKLLLDRMGVGRDEVTIWRGGGDYDAGAARGRAIANAMAPADFTGKW------TDLPAED 336

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
            +  S V+ IE     EEA +IA+ALR +++E  + +AL+T DR LARRV     R+ I I
Sbjct: 337  RRLSGVSTIELATPAEEAQAIALALREAVEEPGRTAALVTPDRALARRVAAHCRRWNILI 396

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            D +AG PLS  L  + L  L  A  +    + +  L+KHPL               +L+ 
Sbjct: 397  DDTAGRPLSILLPGTFLLQLAEAAAQHFAPLPLLALLKHPLIHGDMERVDWLDGVRSLDR 456

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
               RG + +  +  + + +                       D+  A      +   + P
Sbjct: 457  GL-RGPRPAPGLDGIAAHIA----------------------DRPTAAGFWAKVAPMLQP 493

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            +     +     G  ++         C Q +C D       LW    G+  +   S   E
Sbjct: 494  VGRTFGD-----GAQTLRGLLACLRECGQALCGD------ALWTGPAGRAAAEFLSGYEE 542

Query: 594  TGSCIKA--NAIEWIDIITRLIDGETVK--PKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                     +  +   ++  L+D   V+  P+  +   L I G +E+RL   D +I  GL
Sbjct: 543  QADHGPVRIDPADLPGLMRSLLDEIAVRAIPREGQHPRLAIYGPIEARLQTADLMIAAGL 602

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
            NEGVWP   A +P+L+  +++ L L   E+ IG AAHD   A G    I TR+ R+ + P
Sbjct: 603  NEGVWPGRPAPDPWLAPRIRAQLGLVGLEQRIGIAAHDLAQAMGAPRAILTRARRDASGP 662

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
            T+ASR+  RL  + G  F  +          W  +LD         RP P PP   +P  
Sbjct: 663  TLASRFWLRLQAMAGERFEGH-----PTLAAWAERLDRPDAYTPVDRPAPKPPARLRPTV 717

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S +E+ +L  DPYA YARR+L+L  +     DP    RGT  H+I+    K+       
Sbjct: 718  ISVTEVDRLKADPYAFYARRVLRLTPLDPVDADPSAAWRGTAVHDILEAWWKE-----DA 772

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
                 ++    +    +   P +  +W+    +             +    +      K 
Sbjct: 773  CAVEALRPRALAMLRDQRTHPMMRALWQPRLIEAIDWIAAEVAAKAAEGRHVLS-AEGKG 831

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
              +  G+ LTG  DRID    G + + DYKTG  P     ++    QL L     + G F
Sbjct: 832  EAKLAGVTLTGRFDRIDRTPDGGLVVIDYKTGKPPSAVAVREGFSLQLGLLGLIAERGGF 891

Query: 950  SQIDCRKVANLFYIRLKQKFK-------IDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
              +   K     Y  L +  +              + +   DE    +  N  +      
Sbjct: 892  EGV-AGKAGGFEYWSLGRSREGLGYIATPVDPEGKRDRIRTDEFVAIAAANFADAAGQWL 950

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033
             G+ PF + L         +EYD L R  EW
Sbjct: 951  TGDAPFTAKLVPEYAP--YAEYDQLMRRDEW 979


>gi|304320183|ref|YP_003853826.1| hypothetical protein PB2503_03042 [Parvularcula bermudensis HTCC2503]
 gi|303299086|gb|ADM08685.1| hypothetical protein PB2503_03042 [Parvularcula bermudensis HTCC2503]
          Length = 1015

 Score =  435 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 255/1052 (24%), Positives = 405/1052 (38%), Gaps = 82/1052 (7%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            P +FTI    PF   ++  L         R    +P  LA +TIY+P +RA + L     
Sbjct: 17   PAIFTIPQGVPFLEALVAPL--------MRAFEGDPAGLADLTIYLPNRRAARRLIDHLA 68

Query: 66   EITGKKSTILPIIKSLGDVVEEKFTADLLL---SYNLNPPVSNIQRLLELARLILIWRNK 122
                  + ILP ++ LGD+ E+              +   V  + R L LA L+   +  
Sbjct: 69   ASAPTGTVILPQLRVLGDITEDDLMFSAPDMVADEEVPLAVDPMDRRLILAHLLAQRKAA 128

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM--- 179
              D        +  S      + +  A  LA ++D    E      L ++  E       
Sbjct: 129  EGDTAAPARMSAAASPDWP--SLLAGADALASVLDSFHREALPLSALLSMTPEDLAGRAA 186

Query: 180  -WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP-IIIAGSTG 237
              W     FL I ++ W   L +         Q  LM A A+HL     GP I+IAG+ G
Sbjct: 187  DHWHEHLRFLSILAEAWPAILSKQGCIELSDRQTRLMTALADHLSATPDGPPILIAGALG 246

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            +  ATA LM +VA  P GA++LPG                      S     +HPQ +  
Sbjct: 247  ATEATAHLMESVAKSPRGAVILPGAMPMAADQ--------------STLLPPSHPQAAFQ 292

Query: 298  KLLDFLD--IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS-DMRNTDILENKIPNIQK 354
            + L  +      +       +++        +S +  P + + D            ++ +
Sbjct: 293  RWLRRVGGGASVDLSPWDERMTDRKQATRAFLSLALTPAEETGDWHRRFADFRDAYSLDE 352

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
              + ++   A    EEA  +A+ LR  L+   K + L+T DR+LARRV  +L ++ I +D
Sbjct: 353  ALAPLSFATAGTPNEEADFVALLLREVLETEGKTALLVTPDRDLARRVCAKLRQWDIRLD 412

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
             S G PL      + +    + +   +D +A+A LV H L   G       R        
Sbjct: 413  DSGGTPLYGAYRGTYIRQWAHWLGAPDDPVALAALVAHGLFLRGLTRSDKERLARR---- 468

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                             V  R+   +        +    E    L   L+  +   +   
Sbjct: 469  -----------------VDRRLRGMRPRDWQDTQRRLAGEGPSPLETELLQDLDAALRAF 511

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                T        + I+D                      LW +++G+ L++  S +++T
Sbjct: 512  QAATTQHERLRALIEIADRFAR-----------SADGDQLLWQDQDGEALAAQLSAMMQT 560

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                      +  +   L+ G  V         L +LG +E+RL + D +IL GL EG W
Sbjct: 561  AFLPDCPPAAFASLFEALL-GSAVIRTYGTHPRLTVLGLVEARLQSADRVILAGLTEGTW 619

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
            PK T  +PFL   ++  L L T +  +G++A DF        +I  RS + +  P + SR
Sbjct: 620  PKLTTADPFLPHNVRLALGLPTHDAEVGRSALDFVDHALGEEVILIRSEKSDRGPALPSR 679

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            WL RL  L                  W   L +         P P P     P   S S+
Sbjct: 680  WLTRLYNLIEAAKQTEATDITGRLRGWVGALRHPASVDPALPPMPRPAAALLPARLSVSD 739

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
            I QLI DPY+VYARR+L+L  +    ++P   +RGTLFH +   L K   ++ T E+   
Sbjct: 740  IGQLIRDPYSVYARRLLRLFPLDPLAQEPAERERGTLFHAVYERLAKVAPDRVTQEV--- 796

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF-LEHEEKIQSSIEKIFVNIPAKMAI-- 891
                +    +    P     ++  +  +   +F +  + + +      F  I  ++ +  
Sbjct: 797  FAHALAETIDDCLYPSECHDLYAMMGQRAGKAFSVISQTQRRDGATATFAEIEGELTVMA 856

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
                I L G ADRIDL   G   I DYK G  P  +      +PQLS+ A    AG F  
Sbjct: 857  GGRSIDLYGRADRIDLYPDGTYTIIDYKGGSAPTFKQ-DASFEPQLSVLAMMAAAGGFKD 915

Query: 952  IDCRKVANLFYIRLKQKFKIDCITNDKKKY------SADELSEKSLKNLIEIVTLLQNGE 1005
            +   +V  L Y  + +K        ++K               ++ +NL  ++T   +G+
Sbjct: 916  LRRGQVRRLAYTPMLRKEAWSVPFTEEKVPWMVAGEDLKAHLLETAQNLNRMMTEFVSGQ 975

Query: 1006 QPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
              F S LR   KSN + +YDHLAR  EW    
Sbjct: 976  FVFHSQLRP-FKSNSEGDYDHLARRREWAGMD 1006


>gi|326387826|ref|ZP_08209432.1| helicase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207872|gb|EGD58683.1| helicase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 998

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 233/1056 (22%), Positives = 392/1056 (37%), Gaps = 96/1056 (9%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            P V++IA    F   ++  L+     + F         LA +T+ +P++RA++ +   F+
Sbjct: 5    PQVYSIAAHRGFADALVAGLIPRYREDGFG--------LARLTLLLPSRRAVRAVTEAFV 56

Query: 66   EITGKKSTILPIIKSLGDVVEEKFTADLLLSY------NLNPPVSNIQRLLELARLILIW 119
              +G  + +LP +  +GD+  ++    L+         ++ P V              + 
Sbjct: 57   RASGG-ALMLPRMAVVGDLDLDETLGPLVDPLPDDAGGDIPPAVDPT-----------LR 104

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN----E 175
               L D+++              A  + LA+ +A+ ID +  EE   E L          
Sbjct: 105  LLILADLLRIEVASETPDHVPGEAALLRLARGVAETIDRLLVEEVTPERLLDPAVIGLVG 164

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAG 234
                 W  +          W   L E  A      +  L+RA A          P++ AG
Sbjct: 165  DLAEHWKDSTRLFAKVLYRWRAELDERGACDAPERRNRLLRALARRWRETPPAHPVVAAG 224

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST---- 290
             T + PA A L+  VA+ P GAI+LP LD  +   +W+ +                    
Sbjct: 225  VTSAAPAVAHLLRCVADLPGGAIILPDLDLALDQEVWDALGHAGAPADDGAVFGRGDIVT 284

Query: 291  HPQYSLAKLLDFLDIKREDVKRLG--NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
            HPQY L  LL+ + I R++V+       S     RS  IS  FLPP  S +        +
Sbjct: 285  HPQYHLKLLLNRMGIARDEVQAWHRAGPSAAPPARSRAISNLFLPPVASAIW------AR 338

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
            +P+  +  + V ++ + +  EE+++IA  +R +L++ +++ AL+T DR LA RV   L R
Sbjct: 339  LPSEDRSLAGVRIMTSAHPGEESLAIAALVRRALEQPERRVALVTPDRGLAERVIGHLQR 398

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
            + +  D SAG PL  T    +L +L     +    + +  L+ HPL + G          
Sbjct: 399  WNVGADDSAGRPLPQTAAGRLLLALAECWAERAAPVPLIALLGHPLVRAGEGRALWLDRV 458

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
              L                                  P        E  + A  L   ++
Sbjct: 459  RRL--------------------------DLALRGPRPGPGLDGVGEALQRARYLERDLI 492

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                          +    L ++D     V   + +C  E                    
Sbjct: 493  AWWESATALLAPLLAHAEPLPLADALAHLVEAAERLC-GEAIWAEADGRALAAFVEDWSG 551

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            +      + +  +  E   ++   ID   V+P     S L I G LE+R+   D +I  G
Sbjct: 552  AAGDARLAGVLVDPAELPALLRDAIDQVAVRPPYGGHSRLAIYGLLEARMNRADLVICAG 611

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
            LNEG WP   + +P L+  +   L +   +  IG AAHDF  A G+  ++ + +LR+   
Sbjct: 612  LNEGTWPTAPSADPVLAPAVLRALGIPGPDFRIGLAAHDFAAALGSPEVVLSHALRDAAG 671

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
            P + SR+L R+  + G              ++W   LD     PH  RP+P P  E +  
Sbjct: 672  PAVPSRFLLRIRAMLGQSIQTET-----AAIEWASALDQADPVPHSPRPRPMPSAEQRRV 726

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              + + + +L  DPY  YA  IL+L  +     DP    RGT  H I+    K       
Sbjct: 727  DIAATALDRLRGDPYQFYASAILRLSSLDPLDADPTPAWRGTAVHAILEAWHKAGAPPG- 785

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNIPA 887
                  +  +     +  +  P +  +W     +      E + ++              
Sbjct: 786  -----QLIVLAREALDAMSAHPLMRALWTPRLIEALEWIEEEQARLAGEGRTVAAFEQWG 840

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             + +   G+ + G ADRID L  G + I DYKTG  P      +    QL L     +  
Sbjct: 841  DITV--RGVKIKGRADRIDRLPDGTLAIVDYKTGSPPSPTMVAEGFALQLGLIGLIAERD 898

Query: 948  SFSQIDCRKVANLFYIRLKQK---------FKIDCITNDKKKYSADELSEKSLKNLIEIV 998
             F+ +   K     Y  L ++          +       +     DE    +   L + +
Sbjct: 899  GFANLHG-KARRFEYWSLSRRRDGSGFGWCREPVHDGKGRSGVLRDEFLPLTDDYLHDAL 957

Query: 999  TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWR 1034
                 G +PF + L         S+YD L R+ EW+
Sbjct: 958  DRWILGSEPFTARLNP--NLPGYSDYDQLMRLDEWQ 991


>gi|296283898|ref|ZP_06861896.1| helicase [Citromicrobium bathyomarinum JL354]
          Length = 977

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 231/1013 (22%), Positives = 386/1013 (38%), Gaps = 100/1013 (9%)

Query: 52   PTKRAIQELRSEFIEITG---KKSTILPIIKSLGDVVEEKFTADLLLSY---NLNPPVSN 105
            P+ RAI+ +   F+   G       +LP + ++GD+  ++    LL       + P V  
Sbjct: 23   PSGRAIRTVSEAFVRHMGDEGGAGLLLPRMVTIGDLSLDEALGPLLDPLGADEIPPAVDP 82

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                       L W      + +++   +P   P         A+ +A+ +D +  EE  
Sbjct: 83   T----------LRWLRLAALLAEEIGKGAPKGPP-----LFRQARMIAETMDRLLVEEIA 127

Query: 166  WEDLHAL----KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
             EDL               W  +          W   L  +        +  L    A+ 
Sbjct: 128  PEDLLGDRVLDVVGSVAGHWQDSLRRFARVQARWLAELQAMGRVDSATRRNQLFAHAAKS 187

Query: 222  LMK-GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    PI+ AG T + PA ARL+  V+  P GA++LP LD  +    W+ +     +
Sbjct: 188  WRAEPPATPIVAAGVTSAAPALARLLRVVSELPQGAVILPDLDLALSDEAWDELGRAGQS 247

Query: 281  ITSS-----NTTYSTHPQYSLAKLLDFLDIKREDVKRLG--NVSNEMYGRSMVISKSFLP 333
              +           THPQY L  LL  + + R +V++     ++     R+  +S  FLP
Sbjct: 248  DDADGERLGRHDAPTHPQYHLKLLLGRMGVNRGEVRQWHRRGLTAANPDRTHAVSALFLP 307

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393
            P  S          ++P+ ++  + V L+E  N  EEA ++A+A+R  L+E +K+ A++T
Sbjct: 308  PQASKSWV------ELPSEKRRLAAVQLLETGNPEEEAQAVALAVRRKLEEPQKRVAVVT 361

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
             DR+LARR+   L R+ I  D SAG PL  T     L  L   I +    + +   + HP
Sbjct: 362  PDRSLARRIVHHLRRWDIQADDSAGAPLCDTAAGRALLLLAQVIAERAAPVPLIAFLGHP 421

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                   E                      D +D      DR+   +    +   ++  +
Sbjct: 422  FVGVAGAEDS---------------GGARADWLDALRRFEDRLRGPRPAPGLAPLRAIAA 466

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            + D +        +   + PL+    +        +++   +                  
Sbjct: 467  KADVDA---WWGTVADRLAPLMERDEDAPLAELLGTLAQVLEEF-------------CGE 510

Query: 574  NLWFEEEGKTLSSLFSKII--ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
             +W  E+G+ L S    +    + +    +  E  D++T  ++   V+P       + + 
Sbjct: 511  AVWGREDGRALGSFVDDLRQQASAAGTMIDPREVHDVLTDAMERVAVRPAYGGHPRVAVY 570

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
            G LESR+   D +I  GLNEG WP   + +P L+  +   L +   E  IG AAHD   A
Sbjct: 571  GLLESRMARADLIICAGLNEGTWPGGASPDPLLAPPVLRALGVPGGEFRIGLAAHDLAGA 630

Query: 692  NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             G   ++ TR+  + N P I SR+  R+  L G     + +            L      
Sbjct: 631  LGAPQVLLTRAALDANGPAIPSRFFLRIKALLGDLAKRHEES---ELPALVDALRDADPA 687

Query: 752  PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
            P Y  P+P PP E +  T S + + +L +DPY  YA  IL+L        +P    +GTL
Sbjct: 688  PLYPVPQPCPPAEVRRVTISATALDRLRSDPYQFYANAILRLKERDPLDSEPSPAWQGTL 747

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
             H I+ E  K+            +  +   H    +  P    +W           +E+E
Sbjct: 748  AHAILEEWHKQG---------GALVDLATKHLGAMDAHPLTRALWEPRLMAALEW-IENE 797

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
                     + V    +      G+ +TG ADRID L  G   I DYKTG  P K   ++
Sbjct: 798  VSSDPDRRIVAVEQKGRHLF--SGVEITGTADRIDRLADGSYAIVDYKTGGPPSKRMVEE 855

Query: 932  LIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKID----------CITNDKKK 980
                QL      ++ G+++            Y  L +  K D           I N +  
Sbjct: 856  GFALQLGTLGLLVEEGAYADRGIEGVPTRFEYWSLGRDAKSDTGFGYVTTPLKIGNARTG 915

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033
               D+   ++ + L E +     G+ PF +      K  + + YD L R+ EW
Sbjct: 916  MEPDDFLPETRRYLAEALDTWILGDAPFTARPNPDLK--LYATYDQLMRLEEW 966


>gi|312113013|ref|YP_004010609.1| double-strand break repair protein [Rhodomicrobium vannielii ATCC
            17100]
 gi|311218142|gb|ADP69510.1| double-strand break repair protein [Rhodomicrobium vannielii ATCC
            17100]
          Length = 1091

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 245/1096 (22%), Positives = 418/1096 (38%), Gaps = 90/1096 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
              +   VF   P  PF   +  A+L+G L   F      P  + ++ +YVP++ A+  L+
Sbjct: 14   AARGSAVFACPPHRPFLPALAAAILDGAL---FGGGEPEPHDIPALNVYVPSQAAVTPLK 70

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTAD-------------LLLSYNLNPPVSNIQR 108
               ++++   +T LP I+ LGD       A              L  + ++  PV +I+R
Sbjct: 71   LALLDLSPCGATFLPRIRVLGDADPLDMFAAYAPHMDAGDALALLRDAVDVPKPVGDIER 130

Query: 109  LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
             + L+      +         +     L   ++  +A  +A ++A +ID    E      
Sbjct: 131  RVHLSA--AAMKAARDIHSTRMEFGEQLFSGVTATSAAKIAADIASLIDDAHRERADLAK 188

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
            +  L          ++   L+   K W               +  LM  EA  + + +  
Sbjct: 189  IDRLDRGHASGGEQISLQILRAVRKAWDAHKKRSRRLDREERRNRLMALEAAFI-RASDA 247

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            P+I+AGSTGS+ AT  LM  +      AIVL GLD  +  A W  I E            
Sbjct: 248  PVIVAGSTGSVAATMGLMEALGGRARSAIVLHGLDRALDDASWQAIAEH----------- 296

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG----RSMVISKSFLPPDTSDMRNTDI 344
              HPQ+ L +LL  L + R +V  L  V     G    R+  +S++  P  T+      +
Sbjct: 297  PEHPQHGLWQLLARLVVCRNEVSELETVRALPAGGDPIRAAFLSEAMRPASTTARWADYV 356

Query: 345  LENKIPNIQKC---------------------FSDVALIEADNEREEAISIAIALRMSLD 383
               K    +                          + L+EAD  +EEA+ +A+ LR +L+
Sbjct: 357  AARKAEGSRDAGATARDVWADVSLCDAPRGTLAPGLTLVEADTSQEEAVVVALILRAALE 416

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
            +     AL+T D  L  RV+  L  +G+  +    +P +     ++  +      K  DF
Sbjct: 417  DEAAHVALVTPDDALTARVRHALAAWGMASE----LPAAPRHAFALRVAATATSGKPEDF 472

Query: 444  MAIATL-VKHPLAKFGF-------------PEKYLSRAKNALELVALRGNKNSYDIMDLK 489
             A+  L +  P + +                     R    ++L A R       +  + 
Sbjct: 473  TALLRLGLLEPRSAYLRQRESDLTEADPGADRDRFLRLAELVDLGAARQMWRPASMDGIP 532

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNL 548
            + +        +         R+  E  + A LL   +L  ++PL        +     L
Sbjct: 533  AALARAQHAIASGEARHPAMRRIDAEAWDAARLLAGDVLDALSPLTENAADPASDAAPTL 592

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
                W       L  +              + G    SL          +  +  ++   
Sbjct: 593  PFRRWVAAHDEALARLAAIGLAC-------DAGDDAPSLGDAFGVDAPSLALDINDYAAF 645

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
               L  GE           L +L  L++RLL+ D ++LGGLNEG WP+    +P+L+R  
Sbjct: 646  FAELARGEPTPAAGSPHPRLSLLSPLDARLLSADVIVLGGLNEGAWPQTPGPSPWLNRQD 705

Query: 669  QSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
            ++ + L   E+ IGQAAHDF  +A     ++ TR+ + N      SRW+ R+  L     
Sbjct: 706  RAAIGLSPEERRIGQAAHDFASLAAAAPRVVLTRAKKANGSLARPSRWIARITTLARGTG 765

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                 + G  +L+  R             P+P PPL A+PR  S + I+    +PYA+YA
Sbjct: 766  RLAEIETGADWLEMARARRMPATVTPIAPPEPRPPLSARPRRLSVTAIETWFANPYAIYA 825

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
              IL L  +    +  D  D+GTL+H  +    +   ++   +    +   +D   E+  
Sbjct: 826  SFILDLKPLRRIGESHDARDKGTLYHAALNRFFEAYPDRVPDDAAARLVACLDRSAEEFG 885

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGIHLTGFAD 903
                    WR  F + +  F   E + +  +  +   +  K+ +     +    +T  AD
Sbjct: 886  FDLDAAPFWRPRFARFAEWFAATEAQRRDGLRLLKSEVGGKLKLVAEGAAGPFEVTARAD 945

Query: 904  RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            RIDL   G + I D+KT  N    +A++   PQL+LE      G+F+ +      +L YI
Sbjct: 946  RIDLGADGSLRIFDFKTSANAATTSARRG-APQLALEGMLAMEGAFAGLPAGGAPDLCYI 1004

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
                      I   K    ++E    +   L+  +    +   P+    R   +    ++
Sbjct: 1005 IASGGEPPGDIVTLK--VPSEEAIAAAKAGLLLRIARFDDEATPYAYEARAIFRDKADND 1062

Query: 1024 -YDHLARVAEWREEYD 1038
             Y HLARV EW    D
Sbjct: 1063 PYAHLARVKEWSAAAD 1078


>gi|103485654|ref|YP_615215.1| helicase [Sphingopyxis alaskensis RB2256]
 gi|98975731|gb|ABF51882.1| helicase [Sphingopyxis alaskensis RB2256]
          Length = 991

 Score =  386 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 255/1050 (24%), Positives = 409/1050 (38%), Gaps = 84/1050 (8%)

Query: 1    MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
            M  ++P +F+I     F   +   L++              L L    + +P+ RA   +
Sbjct: 1    MATRRPTLFSIPVQRAFADALAAGLIDRYA--------DGVLGLTEGIVLLPSNRARSAV 52

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLI 116
            ++ F+   G    ++P +  +GD   ++  A  L + +    L P +  ++R L LA LI
Sbjct: 53   QAAFVR-AGGAGLLMPRLAVIGDADLDENVALALDAVDMDAPLPPAIEPLRRRLLLAELI 111

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
              +                   P++ A A  LA  LA +ID +  EE     L  L    
Sbjct: 112  ERY-------------TPAGEPPVTGAAAFQLAGGLARVIDQLHYEEIPAAALVDLDLGA 158

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP-IIIAGS 235
            +   W  +   L++   +W + L           + AL+   A           ++ AG 
Sbjct: 159  FADHWRASLARLRLLVDHWPDVLAATGHIDRAARRNALLDRVAAAWRTAAPARFVVAAGI 218

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
            T + PA ARL+ TVA+   G +VLPGLD  + TA W  +     +   S     THPQY 
Sbjct: 219  TTAAPAIARLLRTVADMERGMVVLPGLDTAMATAEWEALGPTGPDPDRSARPLETHPQYH 278

Query: 296  LAKLLDFLDIKREDVKRLGNVSN--EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            L  LLD + I RE+V      S       RS  +S  F P D +             +++
Sbjct: 279  LKLLLDRMGIAREEVAEWEARSPFDGPEARSRFVSLLFAPADYTARWQA------AGDLE 332

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
               + +A     ++ +EA  IA+ +R +++   + +AL+T DR LA R+   L R+GI +
Sbjct: 333  AATAGIAGATFADDAQEAQGIALLMRHAVETPGRTAALVTPDRALAERIAAALARWGIAV 392

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            D SAG PL+ T   ++   LL  +    + +A+  L+ HPL + G P      A   L+L
Sbjct: 393  DDSAGQPLARTPPGAL-AMLLAELAADFNPVALIALLAHPLVRRGEPRTAWLDAVRQLDL 451

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
            +                L             +   +                 + +   P
Sbjct: 452  LLREPG-----------LAPGWAGVSARIAALAADRDARGHALAVELAPWWHQLGEAFVP 500

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            L+            ++           L+ +           W    G+ L+ LF +   
Sbjct: 501  LLAPFAGP-----PVAPDRLLAALRQGLEWLTG------EAAWTGPAGRMLAELFDRWTL 549

Query: 594  TGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                        ++  ++ +L+   +V+P       LFI G LE+RL   D +ILGGL+E
Sbjct: 550  ARGAGPARVAPADFPAMLGQLLGEASVRPPYGGHPRLFIWGLLEARLQRADLMILGGLDE 609

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
            G WP  T  +P+L+  ++  + L   E+  G AAHDF  A G   ++ TR+LR    P +
Sbjct: 610  GRWPAATQPDPWLAPGIRRLIGLPATERQQGMAAHDFAGALGAGEIVVTRALRSGGDPAV 669

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-YTTKQPHYKRPKPFPPLEAQPRTY 770
            ASR+  RL  L G      L   G    D   ++D          +P P PP + +PR  
Sbjct: 670  ASRFWLRLAALAGDLPQPAL--DGVPLTDLAARIDLPADDIEPAGKPCPAPPADRRPRRI 727

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S + + +L  DP+A YA +IL L  +      PD   RGT  H +    ++   N    E
Sbjct: 728  SVTAVDRLARDPFAYYANQILGLSPLAPLSAAPDPRWRGTRVHALFERWVRAGANAAAFE 787

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                  +      +   L       W                +       +      ++A
Sbjct: 788  AELAALR------DDPALDAIARAFWLPRIEPALRWAARQLIE-AEGRTALRAEAWGEIA 840

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            ++  GI LTG ADR+D L+ G + I DYKTG  P  + A   +D QL L     + G  +
Sbjct: 841  LD--GITLTGKADRVDRLRDGRLAIVDYKTGGAPNAKAAFDKLDNQLGLLGLIARRGGLA 898

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITN-------DKKKYSADELSEKSLKNLIEIVTLLQN 1003
             +D  ++A L Y  L+   K                  SA E  + +   L  +      
Sbjct: 899  GVDAAEIAALEYWSLRPDRKAGGAGKISSTYGPRSDLKSAAEAVDHAADALAGLAARYLF 958

Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033
            G+ PF         S    +YD L R  EW
Sbjct: 959  GDAPF-----APGDSATYGDYDQLMRRDEW 983


>gi|225630600|ref|YP_002727391.1| hypothetical protein WRi_008710 [Wolbachia sp. wRi]
 gi|225592581|gb|ACN95600.1| hypothetical protein WRi_008710 [Wolbachia sp. wRi]
          Length = 943

 Score =  349 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 218/1095 (19%), Positives = 382/1095 (34%), Gaps = 223/1095 (20%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             VFT+  +      +   L+     E  R        +  + + +P KR +  L + F  
Sbjct: 3    RVFTV--NVD--ESLFDVLVQHIFSEYER------EKIPEIKVILPCKRDVIALLNAFKN 52

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
               +K  ILP I SL ++ EE    DL+L+ +    +S I+R L L + IL W  K  D 
Sbjct: 53   YNAEKCIILPEIVSLENIDEE----DLILNLDRVKVISPIKRTLLLIQFILEWNRKNNDN 108

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
                               I LA +L  ++D I+  +            ++         
Sbjct: 109  FP-----------------IDLAYSLPSLLDKIQYTQM----------AEFDEHSKKIES 141

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            F+ +  + W + L +L     + ++   + +    L K     II  G          L+
Sbjct: 142  FINLLIETWNKILKDLGVVDILEHKSDYINSMITSLQKDQ--HIIFVGI----GKDKSLI 195

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              + + P G I+LP L+  I    W  + +K             H QY L  LLD+L++ 
Sbjct: 196  KAIYDLPFGEIILPNLNLKIKEKDWKLLDKK-------------HYQYCLKDLLDYLNVD 242

Query: 307  REDVKRLGNVSNE------------MYGRSMVISKSFLPPDTSDMRN------------- 341
            R DV  L    +                   + +++++P  ++ M               
Sbjct: 243  RRDVSFLPEACSPVLRHWDPENLTLNERTRWLYNRNWIPVSSTGMTPSTTQITCKLQCSY 302

Query: 342  ---TDILENKIPNIQKCFS--------------DVALIEADNEREEAISIAIALRMSLDE 384
                       P +   F               ++ +I  D+  EEA   ++ +    +E
Sbjct: 303  TKNQRAGMTGSPELDYVFDTTADLSKVSSGHIGNIEVITCDSREEEAQVTSLIIE---NE 359

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
              +  +L+  D+ LA R    L+R    I            + ++L   +  +      +
Sbjct: 360  GYENVSLVVFDKLLAAR-IACLSRQHSAIPE-------NYPYITLLLYSIEVLTSNWSSV 411

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
            A+ +L+KH L  FG+ ++  SR  +  E+  LR    ++    L   +++ I   K   H
Sbjct: 412  ALLSLLKHRLVTFGYTQEEYSRILSEFEIEILR----NFSTNGLSD-IINAINAHKKLKH 466

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                        KE  +L++  +     PL+           N  ISD     + C+  +
Sbjct: 467  ------------KEDILLIISKLEIIFNPLLNI--------INCPISDVVATHLQCINVL 506

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKI 622
                      + F E    + +     +     I+   +   +  I+T  ++ E      
Sbjct: 507  SG--------INFSELNSEIGNFTCNFLNACEGIEIKCSLELYSQILTLFLEKEFFS--- 555

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                        +  L +   +IL G NE    ++      L+ + +   NL +A++  G
Sbjct: 556  ------VASDLNKFSLYHNKVVILAGFNEAPSFQSP----LLNALTREKFNLPSAQEEQG 605

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
               +          +  TRSL            LQRL +L        LK+  Q Y DW 
Sbjct: 606  YFFYTLHNLFCASKVYITRSLSHRKPI-----LLQRLEIL--------LKEGKQPYRDWL 652

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
            R L+         +P P P  E +    +  S S I++LI +PY+ Y   IL L  +   
Sbjct: 653  RVLNTPECTVPCTQPMPKPQTEVRKEKMQVMSCSAIEKLIRNPYSFYVEYILGLKQLRDL 712

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
               P   +  T+ HNI+   ++ + +            I    F       +   +W   
Sbjct: 713  NFKPSILEFSTMVHNILARYLRNKKSP---------MSIAREAFSTSQF--NFSNMWWVR 761

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---------------------ESIGIHL 898
              KI  SF+E +E   +    + +       I                         I L
Sbjct: 762  LQKIIQSFVEFDETRSNY---VELEKNFSCPIFHIPARDTGSCDQYETAWMTNRPQEILL 818

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
            T   DR++ L SG V I DYK G  P  E       PQL L+A A++      +  R+V+
Sbjct: 819  TARCDRVEYLPSGQVAIIDYKLGSPPSNEEVMSGFFPQLILQALAVEY-----VTGREVS 873

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018
             L Y +L           D ++       ++   +L + ++   +   PFI+     +  
Sbjct: 874  ELAYWKLDYDKIKVISLRDYRQK-----MQEFQNDLPDFLSNYLSNSTPFIASPYFDKFL 928

Query: 1019 NIQSEYDHLARVAEW 1033
               S Y  L RV EW
Sbjct: 929  RFNS-YKQLERVGEW 942


>gi|73666892|ref|YP_302908.1| hypothetical protein Ecaj_0263 [Ehrlichia canis str. Jake]
 gi|72394033|gb|AAZ68310.1| conserved hypothetical protein [Ehrlichia canis str. Jake]
          Length = 911

 Score =  346 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 196/1035 (18%), Positives = 375/1035 (36%), Gaps = 138/1035 (13%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKR----AIQELRS 62
             VF++ P+  F   +            F +D  N    ++V I VP +        EL+ 
Sbjct: 3    KVFSVYPAESFLTVVAK----------FVFDVFN-DTFSNVIIIVPNQEDVELLCNELKL 51

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
             F +    K      I SL D+ ++        ++     +S I++LL L   I +W ++
Sbjct: 52   YFSDTVFGKI----KIMSLADIDQDLLVG----NHGSIKIMSPIRKLLLLMEFIKLWNSE 103

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
              +                    + ++  LA +++ I     +  +L  L +    +   
Sbjct: 104  NDEDYP-----------------LTMSYELATLLNEINVHCIELSNLENLFDCDLPVHCQ 146

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
              A FL   SK W E L E      + ++   + +  E+L K +    +I          
Sbjct: 147  KTAKFLFRLSKKWREVLKEEGVLDILEHRSLYINSLIEYLEKESLNSTVIFAGMAFDEFF 206

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
               +  +    N  I+LP +D  I  + W  +                H QY +  +LD 
Sbjct: 207  INFIQALYKLSNTKIILPYVDMTICQSEWELLD-------------ECHYQYCIKNVLDV 253

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            L I R+D+  LG+ S+ ++  S+     FL     +                 ++ V LI
Sbjct: 254  LMINRDDIIFLGSPSSSIFVNSVFNFNLFLEAYHRNEIQNY----------DDYNRVKLI 303

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
               ++ +EA  ++  ++   + +     + T +  L++R+   L    + +D S    L 
Sbjct: 304  TCVSDEDEAQIVSTLVK---ENSCNDLTIFTNNLLLSKRINSILDSQNL-LDKSDNSYLI 359

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             +     +  +L       + +++ +L+KHP     + ++      +  EL  +R     
Sbjct: 360  LS----FVLYILEVAISNWNPISLLSLLKHPFVTLEYVKEDYEALVSDFELKVIR----C 411

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
            Y   D  S                       +E     +   + I   + PLV  +    
Sbjct: 412  YSSCDFAS------------------IESNIKEHVPDLLFFWEKITSIMLPLVNVR---- 449

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                   IS   K  +TC+ N+          +    +   +   F+ +  + + IK   
Sbjct: 450  ----YEKISSIVKAHITCMNNLLKG-----NTVVSLNDSNKIEEFFNSLKNSCNGIKIYG 500

Query: 603  IE-WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
            I+ + +I+  ++                        L     +I  G NE  +  N+  N
Sbjct: 501  IDLYYEILLSILRSNFFSENY---------KLSCLNLSKKKVVIFAGFNEINYGVNSF-N 550

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
              L+  +++ L L + +K  G  A+          +  T+SL+        S W++RL +
Sbjct: 551  TLLNGWIRAKLGLPSIQKERGYFAYLLHSFFYADKIYITQSLKSFGKINEESVWVRRLKI 610

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQL 778
            LG     ++LK          + L    K   Y RP P P L+ +       S + ++ L
Sbjct: 611  LGELYDIEDLKC-AMHLRTQDKSLFDDVKNLVYLRPNPNPELDKRLGAFNILSSTALETL 669

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
            + +PY  Y   IL +       +     D G + HNI+ + +    NK+  +   L++  
Sbjct: 670  VKNPYVFYLSSILNILPCRGINEKFSMRDFGIIVHNILHKYL--LNNKSKCQCKDLVEIA 727

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
            +    +K    P ++ I    F KI+  F E   +    I++I         I S  I +
Sbjct: 728  VSELLDKYKNFPQVETILWPKFQKIAEQFFEMNLERDHYIDEIMTERFFSWKINS-NIKV 786

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
                DR++ L+ G V I DYKTG  P +      I  Q+ ++A  +K      I     +
Sbjct: 787  VSKCDRVECLRDGSVVIIDYKTGMIPSQSDINYGISLQMIIQALTVKQSLKKDI-----S 841

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018
             L Y ++  +             +  EL ++   +L +++       +PF +   +S   
Sbjct: 842  GLMYWKMSSED-----MKIISIDNYVELMKQLEIDLEQLILNYVTFMKPFTASCDMS--- 893

Query: 1019 NIQSEYDHLARVAEW 1033
               ++YD L R+ EW
Sbjct: 894  -RYTDYDLLTRIKEW 907


>gi|148260454|ref|YP_001234581.1| hypothetical protein Acry_1454 [Acidiphilium cryptum JF-5]
 gi|146402135|gb|ABQ30662.1| Inactivated superfamily I helicase-like protein [Acidiphilium cryptum
            JF-5]
          Length = 959

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 242/1043 (23%), Positives = 403/1043 (38%), Gaps = 99/1043 (9%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
             P+V  I+   PF  E+  A L+    +            A   +++PT+RA +   + F
Sbjct: 2    TPHVRFISADRPFLPELARAWLDEATRDGRDP--------ADGVLFLPTRRAARAAAAAF 53

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
            ++  G    I+P I +      ++    +L   +L P ++  +R   LARLIL    +  
Sbjct: 54   LDAKGG-PLIMPRIAA--IGAADEAALGILAGLDLPPAITAEERRAILARLILGMGGRDG 110

Query: 125  DIIKDLYPESPLSLPISPANAIWLAK-NLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183
                               +    A+ +LA             E L  +        W  
Sbjct: 111  APTTLAAALLLADDLALLLDTAAQAEIDLA-------------ETLPGIVAPDLAEHWQR 157

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPAT 242
              DFL I ++ W   L E  A  P   Q  L+ A+AE         P+ +AG   + PA 
Sbjct: 158  TLDFLSIVTRTWPAILAERGAVDPAVRQRMLIDAQAERWRLTPPAHPVWLAGLAAAPPAL 217

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             RL   VA  P+G +VLPG D  +P   W+ +               THPQ  L +L + 
Sbjct: 218  GRLARVVAGLPHGCVVLPGFDPDLPDNAWSMLDH-----------TPTHPQAGLNRLAEA 266

Query: 303  LDIKREDVKRL-GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
            + ++RE+V  L    +     R  ++ ++FLP   +                     +  
Sbjct: 267  IGVRREEVAPLREGGATGRETRVALLRRAFLPTAPAAD-----------IAAASADGLWR 315

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            ++A +E++EA +IA+ LR +L+   + +AL+T DR LA+RV  EL R GI  D SAG  L
Sbjct: 316  LDAADEQDEARAIALTLRHALETPGRHAALVTPDRGLAQRVAAELERLGIRADDSAGERL 375

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            + T  + +L  L  A     D + +  L+KHPL   G P                     
Sbjct: 376  ADTPPAVLLRLLAAAAASDYDAVPLLALLKHPLVNAGLPAGRC----------------- 418

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                                       ++ L            DH  +    L T+  + 
Sbjct: 419  ----------------RALARRLDLLLRAALPGPGFSAMRHAADHSTKPDEALSTFLADL 462

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-A 600
              +   LS+          L  +          LW  E G  LS   +  I     +   
Sbjct: 463  QVSLRPLSLGPAKTSPAGLLAGLVEAAEAIADELWTGEAGAALSEHLAVQIAALDALPDI 522

Query: 601  NAIEWIDIITRLIDGETVKPKIEKS--STLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
             A E + ++  ++    ++    +     + I G +E+RL   DTL+LGGL EGV+P   
Sbjct: 523  EATELVPLLDAVLGNARLRRPRARDANPRVAIWGMMEARLQRVDTLVLGGLVEGVFPAEP 582

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQ 717
               P+LSR M+    L    + IG+AAHD  +   +   +I +   R    P + SR+L 
Sbjct: 583  EPGPWLSRPMRRAARLPDDAERIGEAAHDLGILIASCDEVILSAPRRRGRAPAVPSRFLA 642

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            R+ +          +        W+ +LD  T +    RP+P PP  A+P +YS S++  
Sbjct: 643  RIDLALRGAGSALKQ---HPASHWSTRLDQPTLRIARPRPEPRPPARARPISYSISKVTT 699

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L++DPYA+YA  +L L  +   + + D    GT+ H+ +  + +     + P+    +  
Sbjct: 700  LLSDPYAIYAGEVLDLHTLNPLQAETDAALFGTITHDALKAVTRTPDWASAPDAAARLAH 759

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI---EKIFVNIPAKMAIESI 894
               S    + L   ++  W     +I+   +E E    + +   + I V +P +      
Sbjct: 760  AFTSELRGKRLRRALEAFWLVRLERIAEWIVEIERGRLADLGKADDIKVELPGEWRFGH- 818

Query: 895  GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
               + G ADRI+      + I DYKTG  P  +  +    PQL +EA   +AG F     
Sbjct: 819  -FTVKGRADRIERRGE-TLAIIDYKTGSPPADKAVEAGSAPQLPIEAVIAEAGGFPGFT- 875

Query: 955  RKVANLFYIRLKQK--FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
             KV  L Y +L                      + + +   +  ++    +   PF+   
Sbjct: 876  GKVTELAYWKLSGGATEGETRALFGGNAGPLRAVIDAARTQIPALLAYYADPATPFLDAP 935

Query: 1013 RLSEKSNIQSEYDHLARVAEWRE 1035
                K      +  ++R AEW+E
Sbjct: 936  HPGRKP-YDQPFAGISRRAEWQE 957


>gi|326403647|ref|YP_004283729.1| double-strand break repair protein AddB [Acidiphilium multivorum
            AIU301]
 gi|325050509|dbj|BAJ80847.1| double-strand break repair protein AddB [Acidiphilium multivorum
            AIU301]
          Length = 959

 Score =  343 bits (880), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 242/1043 (23%), Positives = 405/1043 (38%), Gaps = 99/1043 (9%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
             P+V  I+   PF  E+  A L+    +            A   +++PT+RA +   + F
Sbjct: 2    TPHVRFISADRPFLPELARAWLDEATRDGRDP--------ADGVLFLPTRRAARAAAAAF 53

Query: 65   IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
            ++  G    I+P I +      ++    +L   +L P ++  +R   LARLIL    +  
Sbjct: 54   LDAKGG-PLIMPRIAA--IGAADEAALGILAGLDLPPAITAEERRAILARLILGMGGRDG 110

Query: 125  DIIKDLYPESPLSLPISPANAIWLAK-NLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183
                               +    A+ +LA             E L  +        W  
Sbjct: 111  APTTLAAALLLADDLALLLDTAAQAEIDLA-------------ETLPGIVAPDLAEHWQR 157

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPAT 242
              DFL I ++ W   L E  A  P   Q  L+ A+AE         P+ +AG   + PA 
Sbjct: 158  TLDFLSIVTRTWPAILAERGAVDPAVRQRMLIDAQAERWRLTPPAHPVWLAGLAAAPPAL 217

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             RL   VA  P+G +VLPG D  +P   W+ +               THPQ  L +L + 
Sbjct: 218  GRLARVVAGLPHGCVVLPGFDPDLPDKAWSMLDH-----------TPTHPQAGLNRLAEA 266

Query: 303  LDIKREDVKRL-GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
            + ++RE+V  L    +     R  ++ ++FLP   +                     +  
Sbjct: 267  IGVRREEVAPLREGGATGRETRVALLRRAFLPTAPAAD-----------IAAASADGLWR 315

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            ++A +E++EA +IA+ LR +L+   + +AL+T DR LA+RV  EL R GI  + SAG  L
Sbjct: 316  LDAADEQDEARAIALTLRHALETPGRHAALVTPDRGLAQRVAAELERLGIRAEDSAGERL 375

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            + T  + +L  L  A     D + +  L+KHPL   G P                     
Sbjct: 376  ADTPPAVLLRLLAAAAASDYDAVPLLALLKHPLVNAGLPAGRC----------------- 418

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                                       ++ L            DH  +    L T+  + 
Sbjct: 419  ----------------RALARRLDLLLRAALPGPGFSAMRHAADHSTKPDEALSTFLADL 462

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-A 600
              +   LS+        + L  +          LW  E G  LS   +  I     +   
Sbjct: 463  QVSLRPLSLGPAKTSPASLLAGLVEAAEAIADELWTGEAGAALSEHLAVQIAALDALPDV 522

Query: 601  NAIEWIDIITRLIDGETVKPKIEKS--STLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
             A E + ++  ++    ++    +     + I G +E+RL   DTL+LGGL EGV+P   
Sbjct: 523  EATELVPLLDAVLGNARLRRPRARDANPRVAIWGMMEARLQRVDTLVLGGLVEGVFPAEP 582

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQ 717
               P+LSR M+    L    + IG+AAHD  +   +   +I +   R    P + SR+L 
Sbjct: 583  EPGPWLSRPMRRAARLPDDAERIGEAAHDLGILIASCDEVILSAPRRRGRAPAVPSRFLA 642

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            R+ +          +        W+ +LD  T +    RP+P PP  A+P +YS S++  
Sbjct: 643  RIDLALRGAGSALKQ---HPASHWSTRLDQPTLRIARPRPEPRPPARARPISYSISKVTT 699

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L++DPYA+YA  +L L  +   + + D    GT+ H+ +  + + R   + P+    +  
Sbjct: 700  LLSDPYAIYAGEVLDLHTLNPLQAETDAALFGTITHDALKAVTRTRDWASAPDAAARLAH 759

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI---EKIFVNIPAKMAIESI 894
               S    + L   ++  W     +I+   +E E    + +   + I V +P +      
Sbjct: 760  AFTSELRGKRLRRALEAFWLVRLERIAEWIVEIERGRLADLGKADDIKVELPGEWRFGH- 818

Query: 895  GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
               + G ADRI+      + I DYKTG  P  +  +    PQL +EA   +AG F     
Sbjct: 819  -FTVKGRADRIERRGE-TLAIIDYKTGSPPADKAVEAGSAPQLPIEAVIAEAGGFPGFT- 875

Query: 955  RKVANLFYIRLKQK--FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
             KV  L Y +L                      + + +   +  ++    +   PF+   
Sbjct: 876  GKVTELAYWKLSGGATEGETRALFGGNAGPLRAVIDAARTQIPALLAYYADPATPFLDAP 935

Query: 1013 RLSEKSNIQSEYDHLARVAEWRE 1035
                K      +  ++R AEW+E
Sbjct: 936  HPGRKP-YDQPFAGISRRAEWQE 957


>gi|99034830|ref|ZP_01314745.1| hypothetical protein Wendoof_01000432 [Wolbachia endosymbiont of
            Drosophila willistoni TSC#14030-0811.24]
          Length = 932

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 214/1079 (19%), Positives = 375/1079 (34%), Gaps = 202/1079 (18%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             VFT+  +      +   L+     E  R        +  V I +P KR +  L S F  
Sbjct: 3    RVFTV--NVD--ESLFDVLVQHIFSEYER------EKIPEVKIILPCKRDVIALLSAFKN 52

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
               KK  ILP I SL ++ EE    DL+L+ +    +   +R L L + IL W  K  D 
Sbjct: 53   HNAKKCIILPEIVSLENIDEE----DLILNLDRVKVIKPTKRTLLLIQFILEWNRKNNDN 108

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
                               I LA +L  ++D I++ +            ++        +
Sbjct: 109  FP-----------------IDLAYSLPSLLDKIQSTQTT-------DCYQFDEHSKKIEN 144

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            F+ + ++ W++ L +L     + ++   +      L K     II  G          L+
Sbjct: 145  FISLLTETWSKTLKDLEVVDILKHKSDYINNMIISLQKDQY--IIFVGI----GKDKSLI 198

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              + + P G I+LP L+  I    W ++ +K             H QY L  LLD+L + 
Sbjct: 199  RAIYDLPFGKIILPNLNLKIKEKDWKSLDKK-------------HYQYCLKDLLDYLKVD 245

Query: 307  REDVKRLGNVSNEMYGR------------SMVISKSFLPPDTSDMRNTDILENKIPNI-- 352
            R DV  L    + +                 + +++++P   + M          P    
Sbjct: 246  RRDVSFLPEACSPVPRHWDPENLTLNERTRWLYNENWIPVSATWMTEERAGITGSPEEYL 305

Query: 353  --------------QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
                               ++ +I  D+  EEA   ++ +    +E  +  +L+  D+ L
Sbjct: 306  DYVFDTTADLSKVSSGHVGNIEVITCDSREEEAQVTSLIIE---NEGYENISLVVFDKLL 362

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            A R    L+R    I            + ++L   +  +      +++ +L+KH L  FG
Sbjct: 363  AAR-IACLSRQHSAIPE-------NYPYITLLLYSIEVLTSNWSSVSLLSLLKHRLVTFG 414

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
            + ++  +R  +  E+  LR    +     + ++   +    K +                
Sbjct: 415  YTQEEYTRILSEFEIEILRNFSTNGLSDIINAINAHKKLKYKED---------------- 458

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
              +L++  +     PL+           N SI D     + C+  +         +    
Sbjct: 459  -ILLIISKLEVIFNPLLR--------SINCSIFDVVATHLQCINILS----GINFSELNS 505

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            E G    +  +     G  IK +   +  I+T  ++ E                  +  L
Sbjct: 506  EIGNFTCNFSNAC--EGVGIKCSLELYSQILTLFLEKEFFF---------VASDLNKFSL 554

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
             +   +IL G NE    ++      L+ + +   NL +A++  G   +          + 
Sbjct: 555  YHNKVVILAGFNEAPNFQSP----LLNALTREKFNLPSAQEEQGYFFYTLHNLFCASKVY 610

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
             TRSL            LQRL +L        LK+  Q Y DW R L+         +P 
Sbjct: 611  ITRSLSHRKPI-----LLQRLEIL--------LKEGKQPYRDWLRILNTPECTVPCTQPM 657

Query: 759  PFPPLEAQ---PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
            P P  E +    +  S S I++LI +PY+ Y   IL L  +      P   + GT+ HNI
Sbjct: 658  PKPQTEVRKEKMQVMSCSAIEKLIRNPYSFYVEYILGLKQLRDLNFKPSILEFGTMVHNI 717

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
            +   ++ + +            I    F       +   +W     KI  SF+E +E   
Sbjct: 718  LARYLRNKKSP---------MSIAREAFSTSQF--NFSNMWWVRLQKIIQSFVEFDETRS 766

Query: 876  SSIEKIFVNIPAKMAI---------------------ESIGIHLTGFADRIDLLKSGFVD 914
            +    +         I                     +   I L    DR++ L SG V 
Sbjct: 767  NY---VEWEKNFSCPIFHIPARDTGSCDQYETAWMTNKPQEISLIARCDRVEYLPSGQVA 823

Query: 915  ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
            I DYK G  P  E       PQL L+A A++      I  R+V+ L Y +L         
Sbjct: 824  IIDYKLGTPPSNEEVMSGFFPQLILQALAVEH-----ITKREVSELAYWKLDYDKIKVIS 878

Query: 975  TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033
              + +        ++   +L   ++   +   PFI+     +     S Y  L RV EW
Sbjct: 879  IQNYRYK-----MQELKNDLPGFLSNYLSNSTPFIASPYFDKFLRFNS-YKQLERVGEW 931


>gi|88657793|ref|YP_507616.1| hypothetical protein ECH_0820 [Ehrlichia chaffeensis str. Arkansas]
 gi|88599250|gb|ABD44719.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Arkansas]
          Length = 914

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 184/1032 (17%), Positives = 368/1032 (35%), Gaps = 129/1032 (12%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             +F++     F      A++     + F  +  N    +SV I VP +  ++ L  +   
Sbjct: 3    KIFSVYCPESFL-----AVVAKFAFDIFNDNSGNS---SSVIIIVPNQEDVKLLYGQLKL 54

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
                       + SL D+ ++    +    ++    ++ I++LL L   I +W ++  D 
Sbjct: 55   YFHATVLAQVKVMSLSDIDQDLLANE----HSFVRIMTPIRKLLLLMEFIKLWNSENGDN 110

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
                               + L   L+ +++ +        +L  L +         AA 
Sbjct: 111  YP-----------------LSLGYELSSLLNEMHVHCIPISNLECLFDYDLPAHCQKAAR 153

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            FL   SK W E L +      + ++   +    ++L        +I             +
Sbjct: 154  FLSELSKKWKEVLNKDEVLDILEHRSLYIGNLIKYLQDEVLNCTVIFAGMVFDNFFVNFI 213

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              +   PN  I+ P +D  I    W  +                H QY +  LLD L + 
Sbjct: 214  QELYKLPNSRIIFPYVDISIDEKDWQLLE-------------ECHYQYYVKSLLDILKVN 260

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            R D+  LG  ++ ++  S+     FL                       +S V LI   +
Sbjct: 261  RNDIVFLGEPNHSVFVSSVFNFNLFLEKYHQHEIQNYSD----------YSRVKLITCIS 310

Query: 367  EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
            + EEA  +++ ++ +++ +     + T +  L +R+   +    +    + G  + +   
Sbjct: 311  DEEEAQVVSMLIKENVNSSP---IVFTNNLLLTKRINSIVNAERLLDKPNVGYLILS--- 364

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
               +   L  +    + + + +L+KHP    G+ ++      ++ EL  +R         
Sbjct: 365  --FILHTLEVVMSKWNPIPLLSLLKHPFVTLGYVKEDYDALISSFELKVIRSYSGYDFFS 422

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
                                       +E     +   + I   I PLV  K +      
Sbjct: 423  ----------------------MENNVKEKVPDLLPFWEKITSVILPLVKVKHDV----- 455

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE-W 605
               IS   K  + C+QN+         N + +     +   F  +  + + IK   ++ +
Sbjct: 456  ---ISSIVKAHIVCIQNLLEGNLVIDSNGYSK-----IQEFFDDLQNSCNGIKVYGMDVY 507

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
             +I+T ++             +L         L     +I  G NE  +    +    L+
Sbjct: 508  YEILTSVLYSSF---------SLENYKLSTVNLFKRGIVIFAGFNEINYGV-NSCGTLLN 557

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
            R +++ L L + ++  G  A+          +  T+SL+        S W++RL +L   
Sbjct: 558  RWIRTKLGLPSIQREKGYFAYLLHSFFYADKIYITQSLKSFGKINEESIWIRRLGILAKL 617

Query: 726  DFFDNLKKRGQCYLDWTRKLD-YTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIKQLIND 781
               +NLK   + Y   + +     TK   Y RP+P P +  +       S + ++ L+ +
Sbjct: 618  YDIENLKC--EIYSKISDRFSCDDTKSLAYLRPQPNPDINNRVIAFNVLSTTSLETLVKN 675

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
            PY  Y   IL +       +     D G + HN++ + +    N N      L++     
Sbjct: 676  PYVFYLSNILNILPCKSINEKFSMRDFGIVVHNVLHKYL--LCNNNQHRYEDLVEIAASE 733

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
              +K    P ++ I    F KI+  F E   +    +++I         I S  I +   
Sbjct: 734  LLDKYKDFPQVETILWPKFQKIAEQFFEINLERAHYVDEIITERFFSWEINS-NIEVISR 792

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
             DR++ LK G V I DYKTG  P +      +  Q+ ++A  +K         ++++ L 
Sbjct: 793  CDRVECLKDGSVIIIDYKTGAIPSQSDINYGVALQMIIQALTVKQSL-----KKEISGLM 847

Query: 962  YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
            Y ++  +             +  EL +K    L +++       +PF +   +S+     
Sbjct: 848  YWKISSED-----MRIVPIDNYTELIKKLEVALKQLILDYVEFMKPFTASCDMSK----Y 898

Query: 1022 SEYDHLARVAEW 1033
            ++YD + RV EW
Sbjct: 899  ADYDLITRVKEW 910


>gi|68171127|ref|ZP_00544536.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999452|gb|EAM86092.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Sapulpa]
          Length = 914

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 184/1032 (17%), Positives = 367/1032 (35%), Gaps = 129/1032 (12%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             +F++     F      A++     + F  +  N    +SV I VP +  ++ L  +   
Sbjct: 3    KIFSVYCPESFL-----AVVAKFAFDIFNDNSGNS---SSVIIIVPNQEDVKLLYGQLKL 54

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
                       + SL D+ ++    +    ++    ++ I++LL L   I +W ++  D 
Sbjct: 55   YFHATVLAQVKVMSLSDIDQDLLANE----HSFVRIMTPIRKLLLLMEFIKLWNSENGDN 110

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
                               + L   L+ +++ +        +L  L +         AA 
Sbjct: 111  YP-----------------LSLGYELSSLLNEMHVHCIPISNLECLFDYDLPAHCQKAAR 153

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            FL   SK W E L +      + ++   +    ++L        +I             +
Sbjct: 154  FLSELSKKWKEVLNKDEVLDILEHRSLYIGNLIKYLQDEVLNCTVIFAGMVFDNFFVNFI 213

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              +   PN  I+ P +D  I    W  +                H QY +  LLD L + 
Sbjct: 214  QELYKLPNSRIIFPYVDISIDEKDWQLLE-------------ECHYQYYVKSLLDILKVN 260

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            R D+  LG  ++ ++  S+     FL                       +S V LI   +
Sbjct: 261  RNDIVFLGEPNHSVFVSSVFNFNLFLEKYHQHEIQNYSD----------YSRVKLITCIS 310

Query: 367  EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
            + EEA  +++ ++ +++ +     + T +  L +R+   +    +    + G  + +   
Sbjct: 311  DEEEAQVVSMLIKENVNSSP---IVFTNNLLLTKRINSIVNAERLLDKPNVGYLILS--- 364

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
               +   L  +    + + + +L+KHP    G+ ++      ++ EL  +R         
Sbjct: 365  --FILHTLEVVMSKWNPIPLLSLLKHPFVTLGYVKEDYDALISSFELKVIRSYSGYDFFS 422

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
                                       +E     +   + I   I PLV  K +      
Sbjct: 423  ----------------------MENNVKEKVPDLLPFWEKITSVILPLVKVKHDV----- 455

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE-W 605
               IS   K  + C+QN+         N + +     +   F  +  + + IK   ++ +
Sbjct: 456  ---ISSIVKAHIVCIQNLLEGNLVIDSNGYSK-----IQEFFDDLQNSCNGIKVYGMDVY 507

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
             +I+T ++             +L         L     +I  G NE  +    +    L+
Sbjct: 508  YEILTSVLYSSF---------SLENYKLSTVNLFKRGIVIFAGFNEINYGV-NSCGTLLN 557

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
            R +++ L L + ++  G  A+          +  T+SL+        S W++RL +L   
Sbjct: 558  RWIRTKLGLPSIQREKGYFAYLLHSFFYADKIYITQSLKSFGKINEESIWIRRLGILAKL 617

Query: 726  DFFDNLKKRGQCYLDWTRKLD-YTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIKQLIND 781
               +NLK   + Y   + +     TK   Y RP+P P +  +       S + ++ L+ +
Sbjct: 618  YDIENLKC--EIYSKISDRFSCDDTKSLAYLRPQPNPDINNRVIAFNVLSTTSLETLVKN 675

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
            PY  Y   IL +       +     D G + HN++ + +    N N      L++     
Sbjct: 676  PYVFYLSNILNILPCKSINEKFSMRDFGIVVHNVLHKYL--LCNNNQHRYEDLVEIAASE 733

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
              +K    P ++ I    F KI+  F E   +    +++I         I S  I +   
Sbjct: 734  LLDKYKDFPQVETILWPKFQKIAEQFFEINLERAHYVDEIITERFFSWEINS-NIEVISR 792

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
             DR++ LK G V I DYKTG  P +      +  Q+ ++A  +K         ++++ L 
Sbjct: 793  CDRVECLKDGSVIIIDYKTGAIPSQSDINYGVALQMIIQALTVKQSL-----KKEISGLM 847

Query: 962  YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
            Y ++  +             +  EL +K    L +++       +PF +   +S      
Sbjct: 848  YWKISSED-----MRIVPIDNYTELIKKLEVALKQLILDYVEFMKPFTASCDMS----RY 898

Query: 1022 SEYDHLARVAEW 1033
            ++YD + RV EW
Sbjct: 899  ADYDLITRVKEW 910


>gi|58696747|ref|ZP_00372288.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila
            simulans]
 gi|58537064|gb|EAL60192.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila
            simulans]
          Length = 901

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 209/1043 (20%), Positives = 364/1043 (34%), Gaps = 213/1043 (20%)

Query: 59   ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118
             L + F     +K  ILP I SL ++ EE    DL+L+ +    +S I+R L L + IL 
Sbjct: 3    ALLNAFKNYNAEKCIILPEIVSLENIDEE----DLILNLDRVKVISPIKRTLLLIQFILE 58

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
            W  K  D                    I LA +L  ++D I+  +            ++ 
Sbjct: 59   WNRKNNDNFP-----------------IDLAYSLPSLLDKIQYTQM----------AEFD 91

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238
                    F+ +  + W + L +L     + ++   + +    L K     II  G    
Sbjct: 92   EHSKKIESFINLLIETWNKILKDLGVVDILEHKSDYINSMITSLQKDQ--HIIFVGI--- 146

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
                  L+  + + P G I+LP L+  I    W  + +K             H QY L  
Sbjct: 147  -GKDKSLIKAIYDLPFGEIILPNLNLKIKEKDWKLLDKK-------------HYQYCLKD 192

Query: 299  LLDFLDIKREDVKRLGNVSNE------------MYGRSMVISKSFLPPDTSDMRN----- 341
            LLD+L++ R DV  L    +                   + +++++P  ++ M       
Sbjct: 193  LLDYLNVDRRDVSFLPEACSPVLRHWDPENLTLNERTRWLYNRNWIPVSSTGMTPSTTQI 252

Query: 342  -----------TDILENKIPNIQKCFS--------------DVALIEADNEREEAISIAI 376
                               P +   F               ++ +I  D+  EEA   ++
Sbjct: 253  TCKLQCSYTKNQRAGMTGSPELDYVFDTTADLSKVSSGHIGNIEVITCDSREEEAQVTSL 312

Query: 377  ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             +    +E  +  +L+  D+ LA R    L+R    I            + ++L   +  
Sbjct: 313  IIE---NEGYENVSLVVFDKLLAAR-IACLSRQHSAIPE-------NYPYITLLLYSIEV 361

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            +      +A+ +L+KH L  FG+ ++  SR  +  E+  LR    ++    L   +++ I
Sbjct: 362  LTSNWSSVALLSLLKHRLVTFGYTQEEYSRILSEFEIEILR----NFSTNGLSD-IINAI 416

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
               K   H            KE  +L++  +     PL+           N  ISD    
Sbjct: 417  NAHKKLKH------------KEDILLIISKLEIIFNPLLNI--------INCPISDVVAT 456

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLID 614
             + C+  +          + F E    + +     +     I+   +   +  I+T  ++
Sbjct: 457  HLQCINVLSG--------INFSELNSEIGNFTCNFLNACEGIEIKCSLELYSQILTLFLE 508

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
             E                  +  L +   +IL G NE    ++      L+ + +   NL
Sbjct: 509  KEFFS---------VASDLNKFSLYHNKVVILAGFNEAPSFQSP----LLNALTREKFNL 555

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
             +A++  G   +          +  TRSL            LQRL +L        LK+ 
Sbjct: 556  PSAQEEQGYFFYTLHNLFCASKVYITRSLSHRKPI-----LLQRLEIL--------LKEG 602

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIKQLINDPYAVYARRIL 791
             Q Y DW R L+         +P P P  E +    +  S S I++LI +PY+ Y   IL
Sbjct: 603  KQPYRDWLRVLNTPECTVPCTQPMPKPQTEVRKEKMQVMSCSAIEKLIRNPYSFYVEYIL 662

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
             L  +      P   +  T+ HNI+   ++ + +            I    F       +
Sbjct: 663  GLKQLRDLNFKPSILEFSTMVHNILARYLRNKKSP---------MSIAREAFSTSQF--N 711

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI-------------------- 891
               +W     KI  SF+E +E   +    + +       I                    
Sbjct: 712  FSNMWWVRLQKIIQSFVEFDETRSNY---VELEKNFSCPIFHIPARDTGSCDQYETAWMT 768

Query: 892  -ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
                 I LT   DR++ L SG V I DYK G  P  E       PQL L+A A++     
Sbjct: 769  NRPQEILLTARCDRVEYLPSGQVAIIDYKLGSPPSNEEVMSGFFPQLILQALAVEY---- 824

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
             +  R+V+ L Y +L           D ++       ++   +L + ++   +   PFI+
Sbjct: 825  -VTGREVSELAYWKLDYDKIKVISLRDYRQK-----MQEFQNDLPDFLSNYLSNSTPFIA 878

Query: 1011 HLRLSEKSNIQSEYDHLARVAEW 1033
                 +     S Y  L RV EW
Sbjct: 879  SPYFDKFLRFNS-YKQLERVGEW 900


>gi|58584530|ref|YP_198103.1| RecB exonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58418846|gb|AAW70861.1| RecB exonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 888

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 179/1041 (17%), Positives = 360/1041 (34%), Gaps = 170/1041 (16%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             +FT++    FF  ++  +      E      +           +P +  +  + S F  
Sbjct: 3    RIFTVSVDESFFDTLVQHIFFEYEKEKISKIKII----------LPCRSDVIAMLSAFKN 52

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
               KK  ILP I SL ++ E+    DL+L+ +    +   +R+L L + IL W  K  D 
Sbjct: 53   YDSKKCIILPEIVSLENIDEK----DLILNLDRIKFIKPTKRILLLIQFILEWNKKNNDY 108

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
                               I LA +L  ++D ++  +          + +         +
Sbjct: 109  FP-----------------IDLAYSLPSLLDKVQCIQIT-------DDYQLNDHSKKMEN 144

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            F+ +  + W++ L  L     + Y+   +      L +     II  G  G       L+
Sbjct: 145  FINLLVEAWSKTLKNLGVMDILKYKSDYINNMVISLQEDQ--HIIFVGI-GKGEIYKLLI 201

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              +   P G I+LP L+  I    W ++ ++             H QY L  LLD+L + 
Sbjct: 202  KAIYELPFGKIILPNLNLKIKEKDWKSLDKR-------------HYQYCLKNLLDYLSVS 248

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            RED+  L       +G  +   ++ +  +  D       +    +      ++ +I  D+
Sbjct: 249  REDISFLPEALPPAHGARICDQRTGMTAEYLDYIFDTTADLSKVS-NGYIENIEVITCDS 307

Query: 367  EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
              EE+  +++ +    +E  +  +L+  D+ LA R+    +                  +
Sbjct: 308  REEESQVMSLIIE---NEGYENVSLVVFDKLLAARITCSASENY--------------PY 350

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
             ++L   +  +    + +A+ +L+KH L  FG+ ++  S+  +  E+  LR         
Sbjct: 351  VTLLLYSIEVLTSNWNSVALLSLLKHRLVTFGYAQEEYSKILSEFEIEILRS-------- 402

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
                       T   +  V           KE  +++++ +   + PL+           
Sbjct: 403  ---------FNTSGLDDIVKVINIHKKLRYKEDILIIINKLETILNPLLN--------ST 445

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA--NAIE 604
            N  ISD     + C+  +         ++ F E    + +     +     +    +   
Sbjct: 446  NCPISDVVTAHLRCVSILS--------SVDFLELSNEMGNFTHDFLNACEGVAIECSLEL 497

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            +  I+T  +  E           L +    +  L +   +IL G N+    ++     FL
Sbjct: 498  YSQILTLFLRKEFF---------LAVSDLSKFSLYHNKVVILAGFNDIPSFQSP----FL 544

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
            + + +   +L +  +  G   ++         +                  L     +  
Sbjct: 545  NALTRKRFSLPSVREEQGYFLYNLRNLFCASKVYIIN-------------LLSNRKTILL 591

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIKQLIND 781
                  L+K    Y DW R L+         +P P P  + +    +    S +++LI D
Sbjct: 592  RRLEILLQKSKYPYRDWLRVLNMPEYVTPCIQPMPKPQTKIREEKMQVMPCSAVEKLIRD 651

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
            PY+ Y   +L L  +      P   + G + H+I+   ++ R +            I   
Sbjct: 652  PYSFYIEYVLNLKQLKDLNFKPSILEFGNMVHSILERYLRNRKSP---------MSIAQE 702

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH---- 897
             F       +   +W      I  SF+E ++   +   ++ +       +    +     
Sbjct: 703  VFSTSRF--NFSNMWWVRLQGIIQSFVEFDKARSN---RVELEKSFSYRVPVHNVKATWK 757

Query: 898  -----LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
                 LT   DR++ L +G   I DYK G  P  E       PQL L+A A++       
Sbjct: 758  LQEVSLTARCDRVEYLPNGQAVIIDYKLGSPPSNEEVMSGFFPQLILQALAVEY-----T 812

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
              ++V+ L Y +L           + ++       ++   +L + ++       PFI+  
Sbjct: 813  TGKEVSELAYWKLDYDKIKVISLKNYRQK-----VQEFQSDLPDFLSNYLKNTTPFIASP 867

Query: 1013 RLSEKSNIQSEYDHLARVAEW 1033
               +     S Y  L R+ EW
Sbjct: 868  YFDKFLRFNS-YKQLERIGEW 887


>gi|288927883|ref|ZP_06421730.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str.
            F0108]
 gi|288330717|gb|EFC69301.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str.
            F0108]
          Length = 957

 Score =  327 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 147/1065 (13%), Positives = 312/1065 (29%), Gaps = 167/1065 (15%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +   LL     +           L+ VT+  P KRA   L      +        P
Sbjct: 5    FLEYVAEDLLKKFGTD-----------LSRVTLVFPNKRASLFLNEHLARMADG-PLWSP 52

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
            +  ++  +  ++    +     L            +  L  I+           +     
Sbjct: 53   VYTTISQLFRDRSARIVADDIKL------------VCDLYRIYVQCTGSTETLDHFYGWG 100

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK-NEKYGMWWLLAA-DFLKIASKY 194
             L +S  + I   KNLAD  D+         ++H L            A   F    S  
Sbjct: 101  MLMLSDFDDID--KNLADAADVFRN----LSNIHELDDVSYLTGEQREALKRFFSNFSDD 154

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            +   L                +   +                         +        
Sbjct: 155  YNSELK---------------KRFLQLWQN----------FGDIYNRYNAHLQAEGLAYE 189

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
            GA+                    S +            Q    KL   L+   +      
Sbjct: 190  GALYREVACN----------ENVSFDADVYVFVGFNMLQKVEQKLFARLEKAGKAKFYWD 239

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                 M G +            +        + +I N       +  + A  E  +A  +
Sbjct: 240  FDRYYMEGVNNEAGHYIRQYLNAFPNELFNRDEEIYNNFCQEKKMQFVSASTETIQARFV 299

Query: 375  AIALR-MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
               L+  +  +  +K+A++  D NL + V   L     +++I+ G PL+ +   S + +L
Sbjct: 300  GHWLQNDTFVQAGRKTAVVLCDENLLQTVVHSLPPQVESVNITTGFPLAQSPVFSFVNAL 359

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            +                                +            ++ Y +  L     
Sbjct: 360  IALQTAGYT----------------------RSSGRYRLQYVRPVLRHPYGLF-LSENCS 396

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +AT     H  ++  R      E   LL   + + +  +  Y             +  
Sbjct: 397  KLLATL--EEHHTYYPLRQDLATDEGLTLLFADLEEGVADVQAY------------HARL 442

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGK--TLSSLFSKIIETGSCIKANAIEWIDIITR 611
             +  +  L+ V         +L  E   +  TL +   ++I     +  + I  + +IT+
Sbjct: 443  VEWMLQLLKCVGTSTQETNDHLMKEAIYRMYTLFNRLHELI-ISGDLSVDLITLLRLITQ 501

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            L+    +    E    L ++G LE+R L+FD ++L   NEG  PK      F+   ++  
Sbjct: 502  LVQATCIPFHGEPVVGLQVMGVLETRNLDFDNILLLSCNEGNMPKGVNDASFIPYSIRKA 561

Query: 672  LNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFD 729
              L T +  +   ++ F       +++    +    +  T   SR++ ++LV  G     
Sbjct: 562  HGLTTIDHKVAIYSYYFHRLLQRAKNVTILYNNSTEDGHTGEMSRFMLQMLVESGHQI-- 619

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                  +       ++    +    K+ +       +    S + I + +      +   
Sbjct: 620  ------ERLSLQAGQMPNVLQPHAVKKTQSIMEEMLKLEKLSPTAINRYLRCQLLFFYNI 673

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN----------KNTPEINHLMKQII 839
            +  L        D D    G +FH     + ++ ++          K+       +++++
Sbjct: 674  VAGLKESDDETDDIDNRTFGNIFHKSSQLIYEQLMDANSAVSDRAIKDFLADKSALQRVV 733

Query: 840  DSHFEKE-------NLPPH---IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--- 886
            D  F +E       N  P    + +I R +        L+ +  +      + +      
Sbjct: 734  DRAFNEELFKVSNTNQRPEYNGLQLINRGVIISYLKKLLQMDLALTP-FRILAMEKQVYN 792

Query: 887  ---AKMAIESIGIHLTGFADRIDLLKSG---FVDITDYKTGDNP-----KKETAQKL--- 932
                 +  +   + + G+ DR+D +  G    + + DYKTG  P       E        
Sbjct: 793  DVLFHVDGKQHPLKIGGYVDRLDEVDEGMGKVIRVVDYKTGRKPQMGVATFEDIFSGEKV 852

Query: 933  ------IDPQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITN--DKKKYSA 983
                     Q  L AA ++  +F       V+  L +I+     + D +     ++    
Sbjct: 853  TKNHADYFFQTFLYAAIVRDSAFWNAQKLPVSPALLFIQQASTEENDPVLRLGKERVDDV 912

Query: 984  DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                ++    L  ++  + + ++PF        +   +  Y  + 
Sbjct: 913  ATYRDEFWAGLQSLLEEIFDKDRPF--EPTEDRERCTRCPYRQVC 955


>gi|260911841|ref|ZP_05918408.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
            F0295]
 gi|260634052|gb|EEX52175.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
            F0295]
          Length = 957

 Score =  324 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 145/1072 (13%), Positives = 320/1072 (29%), Gaps = 181/1072 (16%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +   LL     +           L+ VT+  P KRA   L      +        P
Sbjct: 5    FLEYVAEDLLKKFGTD-----------LSRVTLVFPNKRASLFLNEHLARMADG-PLWSP 52

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
            +  ++  +  ++    +     L            +  L  I+           +     
Sbjct: 53   VYTTISQLFRDRSERIVADDIKL------------VCDLYRIYVQCTGSTETLDHFYGWG 100

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL--AADFLKIASKY 194
             L +S  + I   KNLAD  D+         ++H L +  Y           F    S  
Sbjct: 101  MLMLSDFDDID--KNLADATDVFRN----LSNIHELDDISYLTDEQREVLKRFFSNFSDD 154

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            +   L                +   +                         +        
Sbjct: 155  YNTELK---------------KRFLQLWQN----------FGDIYNRYNAHLQEEGLAYE 189

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
            GA+    +               S +  +         Q    +L   L+   +      
Sbjct: 190  GALYREVVCN----------ENVSFDAETYIFVGFNMLQKVEQRLFARLEKAGKAKFYWD 239

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
              S  M G +            +        + +I +  +    +  + A  E  +A  +
Sbjct: 240  FDSYYMEGANNEAGHYIRQYLDAFPNELFNRDEEIYDNFRQEKKLQFVSASTETIQARFV 299

Query: 375  AIALR-MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
               L+  +  +  +K+A++  D NL + V   L      ++I+ G PL+ +   S + +L
Sbjct: 300  GHWLQNDAFVQAGRKTAVVLCDENLLQTVVHSLPPQVERVNITTGFPLAQSPVFSFVNAL 359

Query: 434  LNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
            +                  +  +++HP +       +LS   + L       +       
Sbjct: 360  IALQTAGYTKNSGRYRLQYVRPVLRHPYS------LFLSENCSKLLSTLEEHHTYYPLRQ 413

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            DL +                           E   LL   + + +  +            
Sbjct: 414  DLTT--------------------------DEGLTLLFSDLEEGVADM------------ 435

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK--TLSSLFSKIIETGSCIKANAIE 604
             +  +   +  +  L+ V         +L  E   +  TL +   ++I     +  + I 
Sbjct: 436  QMYHARLVEWMLQLLKCVGTSTQETNDHLMKEAIYRMYTLFNRLHELI-ISGDLSVDLIT 494

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
             + +IT+L+   ++    E +  L ++G LE+R L+FD ++L   NEG  PK      F+
Sbjct: 495  LLRLITQLVQSTSIPFHGEPAVGLQVMGVLETRNLDFDNILLLSCNEGNMPKGVNDASFI 554

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVL 722
               ++    L T +  +   ++ F       +++    +    +  T   SR++ ++LV 
Sbjct: 555  PYSIRKAHGLTTVDHKVAIYSYYFHRLLQRAKNVTILYNNSTEDGHTGEMSRFMLQMLVE 614

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
             G           +       +     +    ++ +       +    S + I + +   
Sbjct: 615  SGHQI--------ERLSLQAGQTPNVLQPHAVRKTQSVMEEMLKLEKLSPTAINRYLRCQ 666

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN----------KNTPEIN 832
               +   +  L        D D    G +FH     + ++ ++          K+     
Sbjct: 667  LLFFYNIVAGLKESDDETDDIDNRTFGNIFHKSSQLIYEQLMDANSTVTDRAIKDFLADK 726

Query: 833  HLMKQIIDSHFEKE-------NLPPH---IDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
              +++++D  F +E       N  P    + +I R +        L+ +  +      + 
Sbjct: 727  SALQRVVDRTFNEELFKVSNTNQRPEYNGLQLINRGVIISYLKKLLQMDLALTP-FRILA 785

Query: 883  VNIP------AKMAIESIGIHLTGFADRIDLLKSG---FVDITDYKTGDNP-----KKET 928
            +           +  +   + + G+ DR+D +  G    + + DYKTG  P       E 
Sbjct: 786  MEKQVYNDVLFHVDGKQHPLKIGGYVDRLDEVDEGMGKVIRVVDYKTGRKPQAGVATFEE 845

Query: 929  AQKL---------IDPQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITN-- 976
                            Q  L AA ++  +F       V+  L +I+     + D +    
Sbjct: 846  IFSGEKVTKNHADYYFQTFLYAAIVRDSAFWNAHKLPVSPALLFIQQASAEENDPVLRLG 905

Query: 977  DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             ++        ++    L  ++  + + ++PF        +   +  Y  + 
Sbjct: 906  KERVDDVATYRDEFWAGLQSLLEEIFDKDRPF--EPTEDRERCTRCPYRQVC 955


>gi|282877530|ref|ZP_06286348.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
 gi|281300354|gb|EFA92705.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
          Length = 960

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 141/1075 (13%), Positives = 302/1075 (28%), Gaps = 192/1075 (17%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L+                 L+ V +  P KRA   +  +   ++  +    P
Sbjct: 5    FLKYVAQDLIAKFG-----------QDLSRVAVVFPNKRASLFMNEQLACLSD-RPIWSP 52

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               ++ D+        +  S  L            +  L   +                 
Sbjct: 53   SYITISDLFRRHSPFTVGDSIKL------------ICDLHKSFNACTGSD---------- 90

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWED----LHALKNEKYGMWWLLAADFLKIAS 192
                +        + L    D I+      +     L  +       +        KI  
Sbjct: 91   ---ETLDKFYGWGQLLLSDFDDIDKNMVDADKVFANLRDIHEFDDVSYLSEEQK--KILQ 145

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
             ++     + +  + +  +   + +  + +       +    S   I     L   VA +
Sbjct: 146  AFFKNF--DEDHDTELKRRFLNLWSHFKDIYHDFNQRL----SDQGIAYEGALYRQVAQN 199

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                     ++      ++                     Q     L   L    + +  
Sbjct: 200  E-------DIEFEYDQYVFVG---------------FNVLQKVEQALFKRLKDTGKALFY 237

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                   +                      D   +++        D+  + A  E  +A 
Sbjct: 238  WDFDRYYLADGKQEAGHFIRQYLDVFPNELDNQSDELYKQFTKPKDITYLSAPTENMQAR 297

Query: 373  SIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
             I   LR     E  K +A++  D  L + V   +      I+I+ G PL+ +  +S++ 
Sbjct: 298  YITTWLREKGRIEAGKNTAIVMCDEQLLQTVIHCIPPEAGKINITTGYPLAQSPVASLIN 357

Query: 432  SLLNAIFKL-------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
             LL                 A+   ++HP A++              E            
Sbjct: 358  VLLMLQTSGHILNTDKYRLAAVKRALRHPYAQYISENHQTLLTHLDTEKHYFP------- 410

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                      R     ++     +     +    L    +      +  L          
Sbjct: 411  ---------TRSELSMDDGLSLLFTDIDDDPTNSLLTTWI------LNVLKRIGQQGRD- 454

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE--TGSCIKANA 602
                                         + +F+E    + +L +++ +      +  N 
Sbjct: 455  ---------------------------NEDAFFQESVFRMYTLINRLSDLIAAGDLTINL 487

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
              +  ++ +LI   ++    E +  + ++G LE+R L+FD L++   NEG  PK  +   
Sbjct: 488  TTFERLMAQLIQATSIPFHGEPAEGIQVMGVLETRNLDFDHLLVLSCNEGNMPKGVSDTS 547

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLL 720
            F+   ++    L T +  +   A+ F         +  T +       T   SR++ +++
Sbjct: 548  FIPHTLREAYGLTTVKHKVAIYAYHFHRLIQRASDVTLTYNNSTEISHTGEMSRFMLQMM 607

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
            V  G           Q Y     +   T      ++ +       Q    S + I + + 
Sbjct: 608  VESGHPI--------QRYSMLCGQSMETHGPEVIEKNEQVMQALNQLEQLSPTAINRYLR 659

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------KKRINKNTPEINH 833
             P   Y   + +L      +   D    G +FH     +        ++    +  ++  
Sbjct: 660  CPLQFYYNILARLKEPEA-EDAVDNRMFGNIFHRSAELIYTHLKEKNQRIQASDIHDLRT 718

Query: 834  ---LMKQIIDSHFEKENL----------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
                ++Q +D  F +E               + +I R +     +  L+ + +  +    
Sbjct: 719  KGKRIEQFVDQAFNEELFNVSNKGYRPEYNGLQLINRRVIIDYLNRLLQID-EKLAPFVI 777

Query: 881  IFVNIPAKMAI------ESIGIHLTGFADRID--LLKSG--FVDITDYKTGDNPKKETA- 929
              +       I       S  + + G+ DR+D  +   G   + + DYKTG +       
Sbjct: 778  KSLEEKVSSTITFETAQGSHSLSIGGYIDRLDEIVNPDGTHRIRVIDYKTGKSMTSTPVD 837

Query: 930  -----------QKLID--PQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDC-- 973
                       +K  D   Q  L A+ +K           V+  L +I+       D   
Sbjct: 838  VDDIFTDEKLSEKHKDYYLQTFLYASIVKHHPQLNPSQLPVSPALLFIQQTAGEDYDPTL 897

Query: 974  ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            +   +K     E   K  +NL ++++ + N   PF        K      Y  L 
Sbjct: 898  LLEKEKVLDIGEHDAKFKENLQQLLSEIYNPSIPFA--PTSELKRCTYCAYRQLC 950


>gi|42520737|ref|NP_966652.1| hypothetical protein WD0912 [Wolbachia endosymbiont of Drosophila
            melanogaster]
 gi|42410477|gb|AAS14586.1| hypothetical protein WD_0912 [Wolbachia endosymbiont of Drosophila
            melanogaster]
          Length = 890

 Score =  321 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 203/1027 (19%), Positives = 358/1027 (34%), Gaps = 192/1027 (18%)

Query: 59   ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118
             L S F     KK  ILP I SL ++ EE    DL+L+ +    +   +R L L + IL 
Sbjct: 3    ALLSAFKNHNAKKCIILPEIVSLENIDEE----DLILNLDRVKVIKPTKRTLLLIQFILE 58

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
            W  K  D                    I LA +L  ++D I++ +            ++ 
Sbjct: 59   WNRKNNDNFP-----------------IDLAYSLPSLLDKIQSTQTT-------DCYQFD 94

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238
                   +F+ + ++ W++ L +L     + ++   +      L K     II  G    
Sbjct: 95   EHSKKIENFISLLTETWSKTLKDLEVVDILKHKSDYINNMIISLQKDQY--IIFVGI--- 149

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
                  L+  + + P G I+LP L+  I    W ++ +K             H QY L  
Sbjct: 150  -GKDKSLIRAIYDLPFGKIILPNLNLKIKEKDWKSLDKK-------------HYQYCLKD 195

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGR------------SMVISKSFLPPDTSDMRNTDILE 346
            LLD+L + R DV  L    + +                 + +++++P   + M       
Sbjct: 196  LLDYLKVDRRDVSFLPEACSPVPRHWDPENLTLNERTRWLYNENWIPVSATWMTEERAGI 255

Query: 347  NKIPNI----------------QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA 390
               P                       ++ +I  D+  EEA   ++ +    +E  +  +
Sbjct: 256  TGSPEEYLDYVFDTTADLSKVSSGHVGNIEVITCDSREEEAQVTSLIIE---NEGYENIS 312

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            L+  D+ LA R    L+R    I            + ++L   +  +      +++ +L+
Sbjct: 313  LVVFDKLLAAR-IACLSRQHSAIPE-------NYPYITLLLYSIEVLTSNWSSVSLLSLL 364

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
            KH L  FG+ ++  +R  +  E+  LR    +     + ++   +    K +        
Sbjct: 365  KHRLVTFGYTQEEYTRILSEFEIEILRNFSTNGLSDIINAINAHKKLKYKED-------- 416

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                      +L++  +     PL+           N SI D     + C+  +      
Sbjct: 417  ---------ILLIISKLEVIFNPLLR--------SINCSIFDVVATHLQCINILS----G 455

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
               +    E G    +  +     G  IK +   +  I+T  ++ E              
Sbjct: 456  INFSELNSEIGNFTCNFSNAC--EGVGIKCSLELYSQILTLFLEKEFFF---------VA 504

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                +  L +   +IL G NE    ++      L+ + +   NL +A++  G   +    
Sbjct: 505  SDLNKFSLYHNKVVILAGFNEAPSFQSP----LLNALTREKFNLPSAQEEQGYFFYTLHN 560

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
                  +  TRSL            LQRL +L        LK+  Q Y DW R L+    
Sbjct: 561  LFCASKVYITRSLSHRKPI-----LLQRLEIL--------LKEGKQPYRDWLRILNTPEC 607

Query: 751  QPHYKRPKPFPPLEAQ---PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                 +P P P  E +    +  S S I++LI +PY+ Y   IL L  +      P   +
Sbjct: 608  TVPCTQPMPKPQTEVRKEKMQVMSCSAIEKLIRNPYSFYVEYILGLKQLRDLNFKPSILE 667

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
             GT+ HNI+   ++ + +            I    F       +   +W     KI  SF
Sbjct: 668  FGTMVHNILARYLRNKKSP---------MSIAREAFSTSQF--NFSNMWWVRLQKIIQSF 716

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAI---------------------ESIGIHLTGFADRID 906
            +E +E   +    + +       I                     +   I L    DR++
Sbjct: 717  VEFDETRSNY---VELEKNFSCPIFHIPARDTGSCDQYETAWMTNKPQEISLIARCDRVE 773

Query: 907  LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
             L SG V I DYK G  P  E       PQL L+A A++      I  R+V+ L Y +L 
Sbjct: 774  YLPSGQVAIIDYKLGTPPSNEEVMSGFFPQLILQALAVEY-----ITKREVSELAYWKLD 828

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026
                      + +        ++   +L   ++   +   PFI+     +     S Y  
Sbjct: 829  YDKIKVISIQNYRYK-----MQELKNDLPGFLSNYLSNSTPFIASPYFDKFLRFNS-YKQ 882

Query: 1027 LARVAEW 1033
            L RV EW
Sbjct: 883  LERVGEW 889


>gi|57239004|ref|YP_180140.1| hypothetical protein Erum2730 [Ehrlichia ruminantium str.
            Welgevonden]
 gi|58578942|ref|YP_197154.1| hypothetical protein ERWE_CDS_02780 [Ehrlichia ruminantium str.
            Welgevonden]
 gi|57161083|emb|CAH57990.1| hypothetical protein Erum2730 [Ehrlichia ruminantium str.
            Welgevonden]
 gi|58417568|emb|CAI26772.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
            Welgevonden]
          Length = 912

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 187/1032 (18%), Positives = 369/1032 (35%), Gaps = 132/1032 (12%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             VF++  S  F   +    L+                ++++ + V +   +  L     +
Sbjct: 3    KVFSVHCSESFLNVVAEFTLDVFYSSTN--------SVSNIIVIVSSNEEMTLLDKLLAK 54

Query: 67   IT-GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125
             + G  S++   + SL D+  +      + + +    +S +++L+ L   I +W ++  D
Sbjct: 55   SSYGNYSSLKIKVISLSDIDHDVL----VNNSDFVKIISPLRKLMLLMEFIKLWNSEHCD 110

Query: 126  IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
                                + L+  L+ +++ + T          L           A 
Sbjct: 111  NYP-----------------LSLSYELSALLNEMYTHCIPLSSFENLFEYDLPEHSQKAV 153

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
             FL   SK WTE L + N    + ++   +     +L +G+    II             
Sbjct: 154  KFLSCFSKKWTEILQQENVLDILEHRSLYINTLIRYLEEGSSNSTIIFAGMAFNTLIIDF 213

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            + T+   PN  I+LP +D  I    W  +               +H QY +  LLD L I
Sbjct: 214  VRTLYKLPNTQIILPYVDVSIDEKNWKLLE-------------ESHYQYCVKNLLDVLKI 260

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
             R DV  LG  +N ++  S+     FL                   I      V +I   
Sbjct: 261  GRNDVVFLGKQNNRVFIDSIFNFDLFLEEYHKGRIQ----------ICDSCDYVQVITCM 310

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            ++ EE+  I+  ++       K  A+ T +  L++RV   +    I  ++     + +  
Sbjct: 311  SDEEESHVISALMKK---YKSKDVAVFTNNVLLSKRVDSIVNLENIPHELDVNYLILS-- 365

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                ++++L  +    + +++ +L+KHP    G+ E   S   +  EL  +R   +   +
Sbjct: 366  ---FVSNVLEVVISSWNPISLLSLLKHPFINLGYSEDEYSTLISNFELKVIRLYSSYDFV 422

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
                                         E     +   + I   + PLV  K       
Sbjct: 423  S----------------------IDGNVREKVPDLIHFWEKITSIVLPLVDVK------- 453

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE- 604
             + +IS   K  + CL+++                 + +   F       + I+ + I+ 
Sbjct: 454  -HCTISSIVKAHIVCLRDLLTGST--------VFSYEKIEGFFDNFQSACANIRMSGIDI 504

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            + +I+  ++              +         L   + +I  G NE  +      +  L
Sbjct: 505  YYEILISVLHNNLF---------VENYRLSSVNLYKREVVIFSGFNELNYGTGLH-STLL 554

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
            +  M+S L L + ++  G  A+       +  +  TRSL+        S W++++ ++  
Sbjct: 555  NNRMRSKLGLPSIQREKGYFAYMLYSFFYSDKIYITRSLKSFGKVNEESIWIKKIKIMAK 614

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLIND 781
               + NL++  + YL   +    +     Y RP+P P +  +       S + ++ L+ +
Sbjct: 615  IYNYKNLER--EDYLRSEKGCTNSVTNLCYLRPQPNPEINHRVMAFNILSTTAVEILVKN 672

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
            PY  Y   IL +       +     D G + HN++ + +    N+   +   L+K     
Sbjct: 673  PYVFYLNNILNILPYKDINEKFSMRDFGIIVHNVLHKYLVTPKNQ--QDYERLIKIAESE 730

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
               K    P ++ I    F +I+  F E      S+I+KI         I    + +   
Sbjct: 731  FLNKYKNFPQVETILWPKFQQIAEQFFEMNLNRNSNIDKIITEHFFSWEIN-NNVKIISK 789

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
             DR++ LK   + I DYKTG  P +    + I  Q+ ++A  +K      I     ++L 
Sbjct: 790  CDRVECLKDNSIAIIDYKTGVIPSQVDISRGIALQMIIQALTVKKSLKKNI-----SDLM 844

Query: 962  YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
            Y ++  +             + +E+ EK+   L E++       +PFI+    S      
Sbjct: 845  YWKIGAED-----IKVVSIDNYEEIMEKTEIALKELILEYLVNRKPFIA----SHDIAGF 895

Query: 1022 SEYDHLARVAEW 1033
              YD L R+ EW
Sbjct: 896  GSYDLLIRLKEW 907


>gi|58617000|ref|YP_196199.1| hypothetical protein ERGA_CDS_02730 [Ehrlichia ruminantium str.
            Gardel]
 gi|58416612|emb|CAI27725.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
          Length = 913

 Score =  311 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 177/961 (18%), Positives = 344/961 (35%), Gaps = 123/961 (12%)

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
             + SL D+  +      + + +    +S +++L+ L   I +W ++  D           
Sbjct: 67   KVISLSDIDHDVL----VNNSDFVKIISPLRKLMLLMEFIKLWNSEHCDNYP-------- 114

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                     + L+  L+ +++ + T          L           A +FL   SK WT
Sbjct: 115  ---------LSLSYELSALLNEMYTHCIPLSSFENLFEYDLPEHSQKAVEFLSCFSKKWT 165

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            E L + N    + ++   +     +L +G+    II             + T+   PN  
Sbjct: 166  EILQQENVLDILEHRSLYINTLIRYLEEGSSNSTIIFAGMAFNTLIIDFVRTLYKLPNTQ 225

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            I+LP +D  I    W  +               +H QY +  LLD L I R DV  LG  
Sbjct: 226  IILPYVDVGIDEKNWKLLE-------------ESHYQYCVKNLLDVLKIGRNDVVFLGKQ 272

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
            +N ++  S+     FL                   I      V +I   ++ EE+  I+ 
Sbjct: 273  NNRVFIDSIFNFDLFLEEYHKGRIQ----------ICDSCDYVQVITCMSDEEESHVISA 322

Query: 377  ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             ++       K  A+ T +  L++RV   +    +  ++     + +      ++++L  
Sbjct: 323  LMKK---YKSKDVAVFTNNVLLSKRVDSIVNLENLPHELDINYLILS-----FVSNVLEV 374

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            +    + +++ +L+KHP    G+ E   S   +  EL  +R   +   +           
Sbjct: 375  VVSFWNPISLLSLLKHPFINLGYSEDEYSTLISNFELKVIRLYSSYDFVS---------- 424

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                              E     +   + I   + PLV  K        + +IS   K 
Sbjct: 425  ------------IDGNVREKVPDLIHFWEKITSIVLPLVDVK--------HCTISSIVKA 464

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE-WIDIITRLIDG 615
             + CL+ +                 + +   F       + I+ + I+ + +I+  ++  
Sbjct: 465  HIVCLRGLLTGST--------VFSYEKIEGFFDNFQSACANIRMSGIDIYYEILISVLHN 516

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
                        +         L   + +I  G NE  +      +  L+  M+S L L 
Sbjct: 517  NLF---------VENYRLSSVNLYKREVVIFSGFNELNYGTGLH-STLLNNRMRSKLGLP 566

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            + ++  G  A+       +  +  TRSL+        S W++++ ++     + NL++  
Sbjct: 567  SIQREKGYFAYMLYSFFYSDKIYITRSLKSFGKVNEESIWIKKIKIMAKIYNYKNLER-- 624

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYARRILK 792
            + YL        +     Y RP+P P +  +       S + ++ L+ +PY  Y   IL 
Sbjct: 625  EDYLRSENGCTNSVTNLCYLRPQPNPEINHRVMAFNILSTTAVEILVKNPYVFYLNNILN 684

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
            +       +     D G + HN++ + +    N+   +   L+K        K    P +
Sbjct: 685  ILPYKDINEKFSMRDFGIIVHNVLHKYLVTPKNQ--QDYERLIKIAESEFLNKYKNFPQV 742

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
            + I    F +I+  F E      S+I+KI         I    + +    DR++ LK   
Sbjct: 743  ETILWPKFQQIAEQFFEMNLNRNSNIDKIITEHFFSWEIN-NNVKIISKCDRVECLKDNS 801

Query: 913  VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + I DYKTG  P +    + I  Q+ ++A  +K      I     ++L Y ++  +    
Sbjct: 802  IAIIDYKTGVIPSQLDISRGIALQMIIQALTVKKSLKKNI-----SDLMYWKIGAED--- 853

Query: 973  CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
                     + +E+ EK+   L E++       +PFI+    S        YD L R+ E
Sbjct: 854  --IKVVSIDNYEEIMEKTEIALKELILEYLVNRKPFIA----SHDIAGFGSYDLLIRLKE 907

Query: 1033 W 1033
            W
Sbjct: 908  W 908


>gi|315609028|ref|ZP_07883998.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315249232|gb|EFU29251.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 967

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 136/1090 (12%), Positives = 286/1090 (26%), Gaps = 205/1090 (18%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +   ++     +           L+   +  P KRA   L      +   +    P
Sbjct: 4    FLETVAHDIITKYGTD-----------LSRTAVVFPNKRASLFLNEHLARLAD-RPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               ++ D+              L            +  L   +           +     
Sbjct: 52   AYITISDLFRRHSKLATADPIKL------------ICDLHKSFVACTGLNETLDHFYGWG 99

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
             L +S         ++   +           D+H   +  +        + LK     ++
Sbjct: 100  QLLLSDF------DDIDKNMADAAKVFANLRDIHEFDDASFLTEEQK--EMLKKFFSNFS 151

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA-----GSTGSIPATARLMSTVAN 251
            +            +   L R   E       G I        G  G      +L   V  
Sbjct: 152  D-----------DHNSELKRRFLELWSH--FGDIFNDYNQRLGQQGLA-YEGKLYREVVE 197

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
            +P                        +    +         Q     L D L  + +   
Sbjct: 198  NPQ----------------------LTFEYDTYLFVGFNMMQKVELALCDRLKREGKARF 235

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                    M G +                      +   +  +   D+  I A  E  +A
Sbjct: 236  YWDYDHYYMSGDNEAGHYIRQYLAHYPNEIAPDDAHDPYDNLQRTKDITYISASTENIQA 295

Query: 372  ISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
              I+  LR +    +  ++A++ AD +L + V   L     +++I+ G PL  +   S++
Sbjct: 296  RYISTWLRENNRIADGSRTAIVMADESLLQTVVHCLPPEVKDVNITTGYPLQQSPFFSLV 355

Query: 431  TSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
              L                   +  L++HP   +  P+         L     R  +   
Sbjct: 356  MQLFALCTMGYQRQSNRYRLHFVNRLLRHPYTPYVSPK------YRDLIDDLNRHKRFYP 409

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
                L       +  +      P      + +     + ++  I      +      ++ 
Sbjct: 410  ARDSLT------LGDEGLELLFPDMGDFDNRKLIGWMLAVLKRIGVNARGVADPLFQESL 463

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                  ++   +L                                         +  +  
Sbjct: 464  FRSYTLLNRLKELM------------------------------------DAGDLTVDTA 487

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                +  +L     V    E    + ++G LE+R L+FD ++L   NEG  PK      F
Sbjct: 488  TLERLTGQLFQSTGVPFHGEPVVGIQVMGVLETRNLDFDHVLLLSANEGNLPKGINDASF 547

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLV 721
            +   ++    L T +  +   A+ F         +  T +    +  T   SR++ +L+V
Sbjct: 548  IPYSIRHAYGLTTIDNKVAIYAYYFYSLIQRATDVTMTYNNATEDGHTGEMSRFMLQLMV 607

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
              G        + GQ             ++    + K       +  + S + I   +  
Sbjct: 608  ESGHPIVRRSLQAGQEP--------KRKEETDITKDKAVEEQLNRFTSLSPTAINTYLRC 659

Query: 782  PYAVYARRILKLDFIP-HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH------- 833
                + R I  ++      +   D    G +FH     +            +        
Sbjct: 660  QKRFFYRYIAHIEEPDTPDEDAIDNRIFGNIFHKACQNIYLSFAGPGDVACDEKGEPQLL 719

Query: 834  ------------------LMKQIIDSHFEKENLPP----------HIDIIWRHLFHKISH 865
                               +++++D  F +E               + +I R++      
Sbjct: 720  HPLTIRQGDIDSYLKSKMRIEEVVDDAFREELFHVKRQGFRPEYNGLQLINRNVIVSYVR 779

Query: 866  SFLEHEEKIQSSIEKIFVNIP------AKMAIESIGIHLTGFADRID----LLKSGFVDI 915
              L  +    +    + + +                + + G  DR+D     L    + +
Sbjct: 780  QLLRLD-SRHTPFTILGLELKVFDTVTFTAGSAERTLQIGGSIDRLDAVASELGGERIRV 838

Query: 916  TDYKTG-----DNPKKETAQKLID---------PQLSLEAAALKAGSFSQIDCRKVA-NL 960
             DYKTG          E      D          Q  L +  +   S    +   V+  L
Sbjct: 839  IDYKTGNKAQAKIKTIEEIFSGEDISRKHTDYYLQTMLYSLIVDRSSRHNPEGEPVSPAL 898

Query: 961  FYIRLKQKFKIDCITN--DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018
             +I+     + D      D+K  SA    ++    L  ++T + +   PF++      + 
Sbjct: 899  LFIQHTTGDEYDPTLTLGDEKITSAGRYRDEFTDRLKGVLTDIFDLSHPFVA--TADRRH 956

Query: 1019 NIQSEYDHLA 1028
                 Y  + 
Sbjct: 957  CDTCPYRQIC 966


>gi|118593730|ref|ZP_01551099.1| hypothetical protein SIAM614_03453 [Stappia aggregata IAM 12614]
 gi|118433640|gb|EAV40303.1| hypothetical protein SIAM614_03453 [Stappia aggregata IAM 12614]
          Length = 429

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 137/426 (32%), Positives = 225/426 (52%), Gaps = 5/426 (1%)

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            ++ ++     + ILG +E+RL  FD  ILGGLNEG+WP+ T  +P+L+R M+ D+ L+  
Sbjct: 1    MRRRLPGDQRVQILGPMEARLQTFDFAILGGLNEGIWPQRTRNDPWLNRPMKRDMGLEPP 60

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
            E+ +G AAHDF    G R ++ +R+ R +  PT+ASRWLQRL  L G D    L+ +G  
Sbjct: 61   ERRLGAAAHDFAQGMGARRVLLSRAARSDGAPTVASRWLQRLTTLAGPDLTKQLEAQGAI 120

Query: 738  YLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
            Y     +LD          RP+P P L A+P++ S +EI++LI DPYA++AR +L+L  +
Sbjct: 121  YSALAAQLDRPEGAVRPASRPQPRPLLAARPKSLSITEIERLIRDPYAIFARHVLELQPV 180

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
                 +P   D+G L H+ + + +         +    + +I +  FE  +  P I  +W
Sbjct: 181  DPIGGEPGAADKGNLIHDALADFLLTWTGPFDDKAVKALTEIGEELFEPLDAFPAIRALW 240

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIGIHLTGFADRIDLLKSGFVD 914
               F KI+  F+ +E +    + + F+ I    +M +      L G ADRIDLL  G + 
Sbjct: 241  WPRFQKIAAGFVAYEARRSQHVSQRFLEIGGGVEMKLPGFDFRLRGRADRIDLLSGGGLS 300

Query: 915  ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKID- 972
            + DYKTG  P ++    L+ PQL LEAA ++   F  +     ++ L Y++LK   +   
Sbjct: 301  VVDYKTGQVPSQKQVDALLSPQLPLEAAMIRRFGFKDVPADAPISELLYLQLKGGSEPVI 360

Query: 973  CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
                + K+   ++L E + K L +++      +  ++S  R+  +  +  +YDHLAR  E
Sbjct: 361  EAPRNPKETPLEDLVEDAWKRLEQLIAHYVREDTGYLSRARVMRERQMGGDYDHLARTQE 420

Query: 1033 WREEYD 1038
            W    +
Sbjct: 421  WALGSE 426


>gi|288926529|ref|ZP_06420447.1| conserved hypothetical protein [Prevotella buccae D17]
 gi|288336671|gb|EFC75039.1| conserved hypothetical protein [Prevotella buccae D17]
          Length = 967

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 135/1090 (12%), Positives = 284/1090 (26%), Gaps = 205/1090 (18%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +   ++     +           L+   +  P KRA   L      +   +    P
Sbjct: 4    FLETVAHDIITKHGTD-----------LSRTAVVFPNKRASLFLNEHLARLAD-RPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               ++ D+              L            +  L   +           +     
Sbjct: 52   AYITISDLFRRHSKLATADPIKL------------ICDLHKSFVACTGLNETLDHFYGWG 99

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
             L +S         ++   +           D+H   +  +        + LK     ++
Sbjct: 100  QLLLSDF------DDIDKNMADAAKVFANLRDIHEFDDASFLTEEQK--EMLKKFFSNFS 151

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA-----GSTGSIPATARLMSTVAN 251
            +            +   L R   E       G I        G  G      +L   V  
Sbjct: 152  D-----------DHNSELKRRFLELWSH--FGDIFNDYNQRLGQQGLA-YEGKLYREVVE 197

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
            +P                        +    +         Q     L D L  + +   
Sbjct: 198  NPQ----------------------LTFEYDTYLFVGFNMMQKVELALCDRLKREGKARF 235

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                    M G +                      +   +  +   D+  I A  E  +A
Sbjct: 236  YWDYDHYYMSGDNEAGHYIRQYLAHYPNEIAPDDAHDPYDNLRRTKDITYISASTENIQA 295

Query: 372  ISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
              I+  LR +    +  ++A++ AD +L + V   L     +++I+ G PL  +   S++
Sbjct: 296  RYISTWLRENNRIADGSQTAIVMADESLLQTVVHCLPPEVKDVNITTGYPLQQSPFFSLV 355

Query: 431  TSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
              L                   +  L++HP   +   +         L     R  +   
Sbjct: 356  MQLFALCTMGYQRQSNRYRLHFVNRLLRHPYTPYVSSK------YRDLIDDLNRHKRFYP 409

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
                L       +  +      P      + +     + ++  I      +      ++ 
Sbjct: 410  ARDSLT------LGDEGLELLFPDMGEFDNRKLIGWMLAVLKRIGVNAREVADPLFQESL 463

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                  ++   +L                                         +  +  
Sbjct: 464  FRSYTLLNRLKELM------------------------------------DAGDLTVDTA 487

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                +  +L     V    E    + ++G LE+R L+FD ++L   NEG  PK      F
Sbjct: 488  TLERLTGQLFQSTGVPFHGEPVVGIQVMGVLETRNLDFDHVLLLSANEGNLPKGINDASF 547

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLV 721
            +   ++    L T +  +   A+ F         +  T +    +  T   SR++ +L+V
Sbjct: 548  IPYSIRHAYGLTTIDNKVAIYAYYFYSLIQRATDVTMTYNNATEDGHTGEMSRFMLQLMV 607

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
              G        + GQ             ++    + K       +  + S + I   +  
Sbjct: 608  ESGHPIVRRSLQAGQEP--------KRKEETDITKDKAVEEQLNRFTSLSPTAINTYLRC 659

Query: 782  PYAVYARRILKLDFIP-HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH------- 833
                + R I  ++      +   D    G +FH     +            +        
Sbjct: 660  QKRFFYRYIAHIEEPDTPDEDAIDNRIFGNIFHKACQNIYLSFAGPGDVACDEKGEPQLL 719

Query: 834  ------------------LMKQIIDSHFEKENLPP----------HIDIIWRHLFHKISH 865
                               +++++D  F +E               + +I R++      
Sbjct: 720  HPLTIRQGDIDSYLKSKMRIEEVVDDAFREELFHVKRQGFRPEYNGLQLINRNVIVSYVR 779

Query: 866  SFLEHEEKIQSSIEKIFVNIP------AKMAIESIGIHLTGFADRID----LLKSGFVDI 915
              L  +    +    + + +                + + G  DR+D     L    + +
Sbjct: 780  QLLRLD-SRHTPFTILGLELKVFDTVTFTAGSAERTLQIGGSIDRLDAVASELGGERIRV 838

Query: 916  TDYKTG-----DNPKKETAQKLID---------PQLSLEAAALKAGSFSQIDCRKVA-NL 960
             DYKTG          E      D          Q  L +  +   S    +   V+  L
Sbjct: 839  IDYKTGNKAQAKIKTIEEIFSGEDISRKHTDYYLQTMLYSLIVDRSSRHNPEGEPVSPAL 898

Query: 961  FYIRLKQKFKIDCITN--DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018
             +I+       D      D+K  SA    ++    L  ++T + +   PF++      + 
Sbjct: 899  LFIQHTTGDDYDPTLTLGDEKITSAGRYRDEFTDRLKGVLTDIFDLSHPFVA--TADRRH 956

Query: 1019 NIQSEYDHLA 1028
                 Y  + 
Sbjct: 957  CDTCPYRQIC 966


>gi|304382259|ref|ZP_07364766.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304336616|gb|EFM02845.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 963

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 143/1073 (13%), Positives = 313/1073 (29%), Gaps = 177/1073 (16%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L+                 L+ + I  P KRA   L  E  +    K    P
Sbjct: 5    FLQCVAQDLIEKYGNR-----------LSRIAIVFPNKRAALFLNEELAK-AAGKPLWSP 52

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               ++ D+        +     L   +S++ +         I  +  P      + +  L
Sbjct: 53   AYITISDLFRRHSRLTVGDPIKL---ISDLYKCFS-----DITGSNEPIDRFYGWGQLLL 104

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
            +        +  A  +   +  +       +DL  L  E+           LK    +++
Sbjct: 105  ADFDDIDKNMAEASRVFANLRDVHEY----DDLSYLTEEQKA--------LLKRFFHHFS 152

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            E                L                              L+ +      GA
Sbjct: 153  E-----------EQHSLLKEKFIRLWNN----------LYEVYRQFNDLIKSQGIAYEGA 191

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            +    ++                N            Q     L   L    +        
Sbjct: 192  LYREVVEDVGVKY----------NYDCYIFVGFNLLQKVEQTLFSKLKSDGKACFYWDFD 241

Query: 317  SNEMYGRSMVISKSFL---PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
               M      + ++               +  ++++ +  +   ++  I A  E  +A  
Sbjct: 242  KYYMPKEPSPVHEAGYYIGQYLKYFPNELNSHDDELYDNLRHPKEMTYISAPTENIQARY 301

Query: 374  IAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
            IA  LR +   E  +K+A++  + +L   V   L      ++I+ G PLS +  +++++ 
Sbjct: 302  IADWLRENGRIEAGRKTAIVLCNEDLLPTVIHCLPPEATQVNITTGYPLSQSPVAALVSQ 361

Query: 433  LLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
            LL                 +I+ L++HP A++         A+   E       K     
Sbjct: 362  LLVLRSYNKSNRRCRYRLSSISPLLRHPYARYISENSGRLLARLRSERRFFPEEKELTID 421

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              L  L     +    N     W            + L+  I   ++      T+     
Sbjct: 422  EGLTLLFHTEPSDAPENLQTCRW-----------LLTLIRRIAINLSAQRMEATDPLMQE 470

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
                +          ++                                   +  ++   
Sbjct: 471  SLFRMYTLLNRLCALIEE--------------------------------EDLAVDSNTL 498

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
              +I +L+   ++    E +  + ++G LE+R ++FD +++   NEG  PK      F+ 
Sbjct: 499  ERLIQQLVSSTSIPFHGEPAVGIQVMGMLETRNIDFDNILILSCNEGNMPKGLNDASFIP 558

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLG 723
              ++    L T +  +  +++ F       +H+    +       T   SR++ +LLV  
Sbjct: 559  HAIRQAYGLTTTDHKVAISSYYFHRLIQRAKHVTLVYNNATEEGKTGEMSRFMLQLLVES 618

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                     + G+            T     +        +      S + I + +  P 
Sbjct: 619  HQKIARQTLQAGRKP-----IFSKPTPIEKGEDVMQRLTQQLDY--ISPTAINRYLRCPL 671

Query: 784  AVYARRILKLD-FIPHFKKDPDRTDRGTLFHNIITELIKKRINK---------NTPEINH 833
              Y  ++  +       +++ D    G +FH     + K+ +++            +  H
Sbjct: 672  QFYYNQVAGIKEPENMEEEEIDNRSFGNIFHRASELIYKEHVHRETVTETDIDRFLKSPH 731

Query: 834  LMKQIIDSHFEKENL-----------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
            L+  I+   F++E                + +I + +        L+ +    +      
Sbjct: 732  LLAAIVKQAFDEELFNIKEANRQPMNYNGLQLINQKVIVHYLKQLLQIDR-RLAPFTIQG 790

Query: 883  VNI----PAKMAI--ESIGIHLTGFADRIDLLKSGF----VDITDYKTGD--NPKKETAQ 930
            +         +     ++ I + G  DR+D +        + + DYKTG    P+    +
Sbjct: 791  LEKKVITSFTITTSQGTLNIKVGGMVDRLDRVSDNQGGVLLRVVDYKTGSGQQPRLSDVE 850

Query: 931  KLID------------PQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITND 977
            ++ D             Q  L +  ++       D   V+  L +I+       D     
Sbjct: 851  EVFDTTKILTKHSDYYLQTLLYSLIVRTSKEYNPDDLPVSPALLFIQHSGADNYDPTLFF 910

Query: 978  KKKYSAD--ELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             K+  AD  + +E+     ++++T +     PFI       +      Y  L 
Sbjct: 911  GKERIADVRDYAEEYETRFMQVLTEIYEPSIPFIPTDNP--RICATCPYRQLC 961


>gi|225677121|ref|ZP_03788121.1| hypothetical protein WUni_006090 [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590825|gb|EEH12052.1| hypothetical protein WUni_006090 [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 903

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 198/1019 (19%), Positives = 351/1019 (34%), Gaps = 206/1019 (20%)

Query: 7   NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
            VFT+  +      +   L+     E  R        +  + + +P KR +  L S F  
Sbjct: 3   RVFTV--NVD--ESLFDVLVQHIFSEYER------EKIPEIKVILPCKRDVIALLSAFKN 52

Query: 67  ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
              +K  ILP I SL ++ EE    DL+L+ +    +S I+R L L + IL W  K  D 
Sbjct: 53  YNAEKCIILPEIVSLENIDEE----DLILNLDRVKVISPIKRTLLLIQFILEWNRKNNDN 108

Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
                              I LA +L   +D I++ +            ++        +
Sbjct: 109 FP-----------------IDLAYSLPSSLDKIQSTQTT-------DCYQFDEHSKKIEN 144

Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
           F+ + ++ W++ L +L     + ++   +      L K     II  G          L+
Sbjct: 145 FISLLTETWSKTLKDLEVVDILKHKSDYINNMITSLQKDQ--HIIFVGI----GKDKSLI 198

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
             + + P G I+LP L+  I    W  + +K             H QY L  LLD+L + 
Sbjct: 199 KAIYDLPFGKIILPNLNLKIKEKDWKLLDKK-------------HYQYCLKDLLDYLKVD 245

Query: 307 REDVKRLGNVS---------------NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
           R DV  L                           + +++++P   + M          P 
Sbjct: 246 RRDVSFLPEACSGVIPVPRHWDPENLTLNERTRWLYNENWIPVSATWMTEERAGITGSPE 305

Query: 352 I----------------QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395
                                 ++ +I  D+  EEA   ++ +    +E  +  +L+  D
Sbjct: 306 EYLDYVFDTTADLSKVSSGHVGNIEVITCDSREEEAQVTSLIIE---NEGYENISLVVFD 362

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
           + LA R    L+R    I            + ++L   +  +      +++ +L+KH L 
Sbjct: 363 KLLAAR-IACLSRQHSAIPE-------NYPYITLLLYSIEVLTSNWSSVSLLSLLKHRLV 414

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
            FG+ ++  +R  +  E+  LR    +     + ++   +    K +             
Sbjct: 415 TFGYTQEEYTRILSEFEIEILRNFSTNGLSDIINAINAHKKLKYKED------------- 461

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                +L++  +     PL+           N SI D     + C+  +          +
Sbjct: 462 ----ILLIISKLEVIFNPLLR--------SINCSIFDVVATHLQCINILSG--------I 501

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            F E    + +           ++   +   +  I+T  ++ E                 
Sbjct: 502 NFSELNSEIGNFTCNFSNACEGVEIKCSLELYSQILTLFLEKEFFS---------VASDL 552

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
            +  L +   +IL G NE    ++      L+ + +   NL +A++  G   +       
Sbjct: 553 NKFSLYHNKVVILAGFNEAPSFQSP----LLNALTREKFNLPSAQEEQGYFFYTLHNLFC 608

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
              +  TRSL            LQRL +L        L+     Y DW R L+       
Sbjct: 609 ASKVYITRSLSHRKPM-----LLQRLEIL--------LQGSKYPYRDWLRILNTPECTVP 655

Query: 754 YKRPKPFPPLEAQ---PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
             +P P P  E +    +  S S I++LI +PY+ Y   IL L  +      P   + GT
Sbjct: 656 CTQPMPKPQTEVRKEKMQVMSCSAIEKLIRNPYSFYVEYILGLKQLRDLNFKPSILEFGT 715

Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
           + HNI+   ++ + +            I    F       +   +W     KI  SF+E 
Sbjct: 716 MVHNILARYLRNKKSP---------MSIAREAFSTSQF--NFSNMWWVRLQKIIQSFVEF 764

Query: 871 EEKIQSSIEKIFVNIPAKMAI---ESIG---------------------IHLTGFADRID 906
           +E   +    + +       I    +                       I LT   DR++
Sbjct: 765 DETRSNY---VELEKSFSCPIFHIPARDTGSCDQYETAWMTDRDLIPQEILLTARCDRVE 821

Query: 907 LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL 965
            L SG V I DYK G  P  E       PQL L+A A++      I  R+V+ L Y +L
Sbjct: 822 YLPSGQVAIIDYKLGTPPSNEEVMSGFFPQLILQALAVEH-----ITKREVSELAYWKL 875


>gi|300726046|ref|ZP_07059504.1| conserved hypothetical protein [Prevotella bryantii B14]
 gi|299776653|gb|EFI73205.1| conserved hypothetical protein [Prevotella bryantii B14]
          Length = 955

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 146/1070 (13%), Positives = 310/1070 (28%), Gaps = 178/1070 (16%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   +++                L+ + +  P KRA   L  E   +   K    P
Sbjct: 4    FLQYIAQDIISKYGTN-----------LSRIAVVFPNKRASLFLNEELARLAD-KPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               ++ D+              L   + ++ ++           +         + +  +
Sbjct: 52   SYITISDLFRRHSKLQAGDPIKL---ICDLHKVFC-----SCTGSSESLDEFYGWGQLLI 103

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
            +        +  A  +   +  I       +D+  L +E+      +   F    S+   
Sbjct: 104  ADFDDIDKNMADADKVFANLKDIHE----LDDVTYLTDEQK----EMLQKFFSNFSEEHN 155

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             +L E         +   + +  + +       +I  G          L   V    +  
Sbjct: 156  TKLKE---------RFLSLWSHFDDIYHQFNTRLIEQGIA----YEGALYRKVVEDADIE 202

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                                   N  +         Q     L D L  + +        
Sbjct: 203  ----------------------FNFDTYLFVGFNMMQKVELSLCDRLQKQGKAKFYWDYD 240

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
               M                      D   + I +       V  I A  E  +A  ++ 
Sbjct: 241  DYYM---QTEAGTYIRQYLAHYPNELDNTNSNIYHNFTRPKQVTYISAATENIQARYVSE 297

Query: 377  ALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
             L+ +   E  +++A++ AD  L   V   L      ++++ G PL+ T  SS + +L+ 
Sbjct: 298  WLKANNRIEAGRRTAVVMADEALLNTVIHSLPEEVTKVNVTTGYPLAQTPVSSFVETLIQ 357

Query: 436  AI-------FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
                             +  +++HP A++           + + +V+ R   +  D+   
Sbjct: 358  LQTIGHPKDTDRFRLHQVNAILRHPYARYISD--NCKEVYDNINIVSKRYYPSMKDLAGE 415

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
               +    +     T   H +             LV  +   +     +  +        
Sbjct: 416  DENLALLFSDLSAETQYLHTK------------RLVTWLCDVLQCTGHHAKDDKDALFQE 463

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            S+     L    +  +                                 ++ +   +  +
Sbjct: 464  SLFRMYTLLNRLVGLMDT-----------------------------GDLEIDIQTFTRL 494

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            +T+LI   T+    E +  + ++G LE+R L+FD +++   NEG  PK    + F+   +
Sbjct: 495  LTQLIQSTTIPFHGEPAVGIQVMGVLETRNLDFDHVLILSCNEGNLPKGVNDSSFIPYSI 554

Query: 669  QSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTD 726
            +    L T +  +   A+ F         +    +    +  T   SR++ ++LV     
Sbjct: 555  RKAYGLTTVDNKVAIYAYYFHSLLQRAGDVTLIYNNSTEDGHTGEMSRFMLQMLVESPFL 614

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                  + GQ  +   R+           + +       Q  T S S I Q +      Y
Sbjct: 615  IKQKSLRAGQIPISTHRE--------AIPKDEIVLNKLQQINTLSPSAINQYLFCQLRFY 666

Query: 787  ARRILKLDFIPHFKKD-PDRTDRGTLFHNIITELIKKR------INKNTPE---INHLMK 836
             R I  +       +D  D    G +FH+       +          +  E      L+ 
Sbjct: 667  YRYIAGISEPDENDEDQIDNRIFGNIFHHASELFYNQFGKGAVIQQGDIDEYLKRPELLG 726

Query: 837  QIIDSHFEKENL-----------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
            +++D  F ++                + II R +        L  + ++      +   I
Sbjct: 727  KLVDEAFREDLFNIKDPHGYLPEYNGLQIINREVILNYILQLLRLDRELTP-FTILGTEI 785

Query: 886  PA------KMAIESIGIHLTGFADRID---LLKSG-FVDITDYKTGDNPKKE-------- 927
                    K++     + + G  DR+D    +  G  + + DYKTG  P ++        
Sbjct: 786  GVYMDTQIKISTGQRSLRIGGLIDRLDSINTMPEGERIRVVDYKTGVLPSRKVSSIDDIF 845

Query: 928  ------TAQKLIDPQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCIT--NDK 978
                          Q  L +  ++       D   V+  L +I+       D       +
Sbjct: 846  GTEFIHQMHSDYYLQSFLYSYIIRHNLKYNADNLPVSPALLFIQHTGGKDYDPTLMIGKE 905

Query: 979  KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            K    D  +++  K L E++T +      F       +       Y+ L 
Sbjct: 906  KVIDIDTYADEYSKKLHEVLTDIFEPVLSF--EPTEHKDRCTLCPYNKLC 953


>gi|198277204|ref|ZP_03209735.1| hypothetical protein BACPLE_03413 [Bacteroides plebeius DSM 17135]
 gi|198269702|gb|EDY93972.1| hypothetical protein BACPLE_03413 [Bacteroides plebeius DSM 17135]
          Length = 960

 Score =  301 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 150/1073 (13%), Positives = 299/1073 (27%), Gaps = 182/1073 (16%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F +++   L      +              V +  P KRA         + +  +    P
Sbjct: 7    FLKQVAADLYRKMNGD-----------FTKVAVVFPNKRASLFFNEYLAQESD-RPVWSP 54

Query: 77   IIKSLGDVVEEKFTADLLLSY----NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
               S+ ++  +        S     +L      I    E       W   L     D   
Sbjct: 55   AYVSISELFRQSSQWVTGDSIKLVCDLYKVFREITGSKESLDEFYFWGEMLISDFDDADK 114

Query: 133  ESP--LSLPISPANAIWLAKNLADIIDIIETEEKK--WEDLHALKNEKYGMWWLLAADFL 188
                  +L  +  +   L     D ++  + E     + +    +  +    ++   D L
Sbjct: 115  NMADTKALFSNLKDLNKLTGE-YDFLEEGQKEALSQFFRNFSIEQVTELKRRFISLWDVL 173

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
                  + E L E   +        +       + +      +  G          L S 
Sbjct: 174  GDIYTQYKELLREQGIAYEGMLYREVTETMD--VQQFPYDKYVFVGFNVLNKVEQTLFSK 231

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +                      +   +            + HP                
Sbjct: 232  L----------------------HEAGKALFYWDYDTFYLNKHPH--------------- 254

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                    + E   R++    S LP    D  N                ++  IE+  E 
Sbjct: 255  -------EAGEFIRRNLKNFPSELPSSLFDHLNH-------------PKEITFIESPTEN 294

Query: 369  EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
             +A  +   +R +L EN+K++A++  +  + + V   L     +I+I+ G PLS T   S
Sbjct: 295  GQARYLPQWIRKNLTENEKETAVVLCNEAMLQPVLHSLPDNVRHINITMGFPLSQTPAYS 354

Query: 429  ILTSLLNAI-------FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
             + +LL               F  + +++KHP  +    E         LE      N+ 
Sbjct: 355  FVKTLLELHIAGYNSRSGRYQFAEVISVLKHPYTQLLSEE------AAPLEKELTEKNRF 408

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                 +L                          E  E   LL       +          
Sbjct: 409  YPLPSEL--------------------------ERDEALSLLFKPCSHNLELCKR----- 437

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL-SSLFSKIIETGSCIKA 600
                    ++D  K      +         L  L+ E   K+         +     ++ 
Sbjct: 438  --------LADILKQVAQLYRKQAASTSDALDQLYREALFKSFTMVNRFHALLESKDLEV 489

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                +  ++ R++   ++    E +  + ++G LE+R L+F  +IL  +NEG  PK    
Sbjct: 490  QPTTFHRLLVRVMSTASIPFHGEPAIGMQVMGVLETRNLDFRHVILLSVNEGQLPKAGGD 549

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSL-RENNIPTIASRWLQR 718
              F+   ++    + T +  I   A+ F              +   +       SR++ +
Sbjct: 550  ASFIPYNLRKAFGMTTIDHKIAVYAYYFYRLLQRAEKATLLYNTVSDGMNRGEMSRFMLQ 609

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            LL+  G        +  Q  +  +      +     +    F          S S +   
Sbjct: 610  LLIEWGYPVQRKQLEAEQSPIASSPICIPKSPDIMKRMQSVFDVRVNPKALLSPSALNCY 669

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
            ++ P   Y + +  L        + D    G++FH     + K+            ++ +
Sbjct: 670  LDCPLKFYYKYVAGLAAPEEVSAEIDSAKFGSIFHYAAEHIYKELTAHGKVINKDTLEAL 729

Query: 839  IDSHF-------------------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
            +                       ++      + +I   +  +     L ++    +   
Sbjct: 730  LKEEVKLQNYVDNGFKELFFHLPADERPEYNGVQLINSAVILRYIQQLLRNDL-RHAPFT 788

Query: 880  KIFVNIPA--KMAIESIGIHLT----GFADRIDLLKSGFVDITDYKTG----DNPKKETA 929
             +         + I++    +     G  DR+D  K   + I DYKTG      P  E+ 
Sbjct: 789  FVGSEQRVMEDVEIQTPKGAIRSRMGGIIDRMD-SKDNVLRIVDYKTGGKADTPPSVESL 847

Query: 930  QKL------IDPQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITNDKK--- 979
                        Q  L AA +      + D RKVA  L YI          +   K+   
Sbjct: 848  FTPGPKRPNYVFQTFLYAAIVCRKLRERNDDRKVAPALLYIHRAAAEDYSPVVQLKESYN 907

Query: 980  ----KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                      L E+    L  ++  + N +  F       E      ++  + 
Sbjct: 908  KTTPVEDFSLLEEEFRTRLQALLEEIFNPDLSF--SQTEEEDRCTYCDFKEIC 958


>gi|265753492|ref|ZP_06088847.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235206|gb|EEZ20730.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 959

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 144/1065 (13%), Positives = 296/1065 (27%), Gaps = 164/1065 (15%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L   T              LA   +  P KRA         + +       P
Sbjct: 4    FLKLVAADLYKHTEGN-----------LAHTAVVFPNKRAGLFFNEYLAQESDS-PIWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               S+ ++       ++     L            +  L  I+R +              
Sbjct: 52   AYVSISELFRSLSPWEVGDPVKL------------VCELYKIFRRET------------- 86

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                +  +  +  + L    D  +      + L +              D          
Sbjct: 87   QSTETLDDFYFWGEMLISDFDDADKNRVDTDKLFS-----NLQDLRNIMDDYTFIDDEQE 141

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            E + +   +  +  + AL                I  G   S+ +       +       
Sbjct: 142  EAIRQFFQNFSIERRTALKERFISLWNVLGN---IYKGFRESLASQNIAYEGM------- 191

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-N 315
                     +   +   +                        L   L    + V     +
Sbjct: 192  ---------MYRHVIEHLDVDKLPYEKYIFVGFNVLNKVEHTLFTQLKDAGKAVFYWDYD 242

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                   R  V  ++      +       L  ++        +V  I +  E  +A  + 
Sbjct: 243  EFYMKENRQAVTHEAGEFIRRNLRDFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLP 302

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              +R +L   +K++A++  +  L + V   L     +++I+ G PLS T   S L +LL 
Sbjct: 303  QWIRNNLTTPEKETAVVLCNEALLQPVLHSLPAEVKHVNITMGFPLSQTPVYSFLIALLE 362

Query: 436  AIFKLN-------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
                          F ++ TL+KHP  +    +  L       E    R N+      +L
Sbjct: 363  LHTHGFNFKSGRYTFQSVVTLLKHPYTRQLTGQAELL------EKELTRNNRFYPLPGEL 416

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-CGN 547
                                                + + +  TPL              
Sbjct: 417  GKD---------------------------------EFLTRLFTPLSGNLNLCIRLSETL 443

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              ++   +   +  ++          +L+             +  E    +   +  +  
Sbjct: 444  QQVASIYQANTSGTEDTDAFNQLYRESLFKAYTTINRFRTLIEEDE----LTVQSETFRR 499

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            ++ +++    +    E +  + ++G LE+R L+F  L+L  +NEG  PK+   + F+   
Sbjct: 500  LLVKVLSTTNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYN 559

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725
            ++    + T E  I   A+ F         +    +   +       SR++ + L+    
Sbjct: 560  LRKAFGMTTIEHKIAVYAYYFYRLLQRAERITLIYNTSSDGLNRGEWSRFMLQFLIEWPH 619

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                   + GQ     +      T     +    F         +S S +   ++ P   
Sbjct: 620  PITRQFLEAGQSPQGTSSITVEKTPDVMRQMQSLFDVRANPKAKFSPSALNYYLDCPLKF 679

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMK----- 836
            Y R +  L        + D    G++FH     + K             +  L++     
Sbjct: 680  YYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKL 739

Query: 837  -QIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
               +D+ F+K               + +I   +  +     L+++    +    I   + 
Sbjct: 740  QDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDL-RYAPFTFIASEME 798

Query: 887  AKMAIESI---GI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935
                I+     G+    + G  DR+D  K G + I DYKTG         + L  P    
Sbjct: 799  VDEPIDIQTPKGVIKSRIGGIIDRMD-SKDGTLRIVDYKTGGDADTPPHVESLFIPDKKR 857

Query: 936  -----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
                 Q  L AA +      Q   +    L YI          +    +     E  E  
Sbjct: 858  SNYVFQTFLYAAIMCR---KQPTMKIAPALLYIHRAATETYSPVIQMGESRKPKEAVEDF 914

Query: 991  -------LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                    + L  ++  + N E+ F     + +      ++  L 
Sbjct: 915  SKYEKEYRERLQRLLEEIFNPEKSFTQTEIIEK--CTYCDFKALC 957


>gi|212693030|ref|ZP_03301158.1| hypothetical protein BACDOR_02537 [Bacteroides dorei DSM 17855]
 gi|212664397|gb|EEB24969.1| hypothetical protein BACDOR_02537 [Bacteroides dorei DSM 17855]
          Length = 959

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 145/1065 (13%), Positives = 296/1065 (27%), Gaps = 164/1065 (15%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L   T              LA   +  P KRA         + +       P
Sbjct: 4    FLKLVAADLYKHTEGN-----------LAHTAVVFPNKRAGLFFNEYLAQESDS-PIWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               S+ ++       ++     L            +  L  I+R +              
Sbjct: 52   AYVSISELFRSLSPWEVGDPVKL------------VCELYKIFRRET------------- 86

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                +  +  +  + L    D  +      + L +              D          
Sbjct: 87   QSTETLDDFYFWGEMLISDFDDADKNRVDTDKLFS-----NLQDLRNIMDDYTFIDDEQE 141

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            E + +   +  +  + AL                I  G   S+ +       +       
Sbjct: 142  EAIRQFFQNFSIERRTALKERFISLWNVLGN---IYKGFRESLASQNIAYEGM------- 191

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-N 315
                     +   +   +                        L   L    + V     +
Sbjct: 192  ---------MYRHVIEHLDVDKLPYEKYIFVGFNVLNKVEHTLFTQLKDAGKAVFYWDYD 242

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                   R  V  ++      +       L  ++        +V  I +  E  +A  + 
Sbjct: 243  EFYMKENRQAVTHEAGEFIRRNLRDFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLP 302

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              +R +L   +K++A++  +  L + V   L     +++I+ G PLS T   S L +LL 
Sbjct: 303  QWIRNNLTTPEKETAVVLCNEALLQPVLHSLPAEVKHVNITMGFPLSQTPVYSFLIALLE 362

Query: 436  AIFKLN-------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
                          F ++ TL+KHP  +    +  L       E    R N+      +L
Sbjct: 363  LHTHGFNFKSGRYTFQSVVTLLKHPYTRQLTGQAELL------EKELTRNNRFYPLPGEL 416

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-CGN 547
                                                + + Q  TPL              
Sbjct: 417  GKD---------------------------------EFLTQLFTPLSGNLNLCIRLSETL 443

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              ++   +   +  ++          +L+             +  E    +   +  +  
Sbjct: 444  QQVASIYQANTSGTEDTDAFNQLYRESLFKAYTTINRFRTLIEEDE----LTVQSETFRR 499

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            ++ +++    +    E +  + ++G LE+R L+F  L+L  +NEG  PK+   + F+   
Sbjct: 500  LLVKVLSTTNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYN 559

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725
            ++    + T E  I   A+ F         +    +   +       SR++ + L+    
Sbjct: 560  LRKAFGMTTIEHKIAVYAYYFYRLLQRAERITLIYNTSSDGLNRGEWSRFMLQFLIEWPH 619

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                   + GQ     +      T     +    F         +S S +   ++ P   
Sbjct: 620  PITRQFLEAGQSPQGTSSITVEKTPDVMRRMQSLFDVRANPKAKFSPSALNYYLDCPLKF 679

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMK----- 836
            Y R +  L        + D    G++FH     + K             +  L++     
Sbjct: 680  YYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKL 739

Query: 837  -QIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
               +D+ F+K               + +I   +  +     L+++    +    I   + 
Sbjct: 740  QDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDL-RYAPFTFIASEME 798

Query: 887  AKMAIESI---GI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935
                I+     G+    + G  DR+D  K G + I DYKTG         + L  P    
Sbjct: 799  VDEPIDIQTPKGVIKSRIGGIIDRMD-SKDGTLRIVDYKTGGDADTPPHVESLFIPDKKR 857

Query: 936  -----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
                 Q  L AA +      Q   +    L YI          +    +     E  E  
Sbjct: 858  SNYVFQTFLYAAIMCR---KQPTMKIAPALLYIHRAATETYSPVIQMGESRKPKEAVEDF 914

Query: 991  -------LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                    + L  ++  + N E+ F     + +      ++  L 
Sbjct: 915  SKYEKEYRERLQGLLEEIFNPEKSFTQTEIIEK--CTYCDFKALC 957


>gi|282880687|ref|ZP_06289389.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305413|gb|EFA97471.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
          Length = 952

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 144/1069 (13%), Positives = 295/1069 (27%), Gaps = 181/1069 (16%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +   LL                 L+ + +  P KRA   L     +++  +    P
Sbjct: 5    FLEYVAKDLLEKFGTN-----------LSHIAVVFPNKRASLFLNKYLAQLSD-RPLWSP 52

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               ++ D+  +  T  +     L   + ++ +       I     +    +   + E  L
Sbjct: 53   SYLTISDLFRQHSTLTVGDPIKL---ICDLHKSF-----ITCTGREDTLDVFYAWGELLL 104

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW-LLAADFLKIASKYW 195
            +        +  A  +   +  I       +D+  L           +   F        
Sbjct: 105  ADYDDIDKNLADADKVFANLQNIHE----LDDISYL-----SEHQKQILQKFFSNF---- 151

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                 + N  + +  +   + +    +       + + G          L   V +  N 
Sbjct: 152  -----DENHHTELKRRFIELWSHLSDIYHHFNEKLSLQGLA----YEGALYRNVVSDKN- 201

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
                  L       I+                     Q    +L   L    +       
Sbjct: 202  ------LSFEFDQYIFVG---------------FNVLQQVEQELFRHLKSMGKAKFYWDF 240

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                M       S              D     I    K    +  + A  E  +A  I+
Sbjct: 241  DDYYMSDEKQEASHFIRQYLDVFPNELDCHNADIYQQFKQPKQITYLSAPTETIQARYIS 300

Query: 376  IALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
              L+ +   E   K+A++  D ++ + V   +      ++I+ G PL+ +  +S++  LL
Sbjct: 301  EWLQHNGRMEAGIKTAIVMCDESILQTVIHCIPPEVSKVNITTGYPLAQSPVASLIHQLL 360

Query: 435  NAIFKLNDF------MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
                             +  ++ HP  K+      LS     L               +L
Sbjct: 361  KLQLSSYAHNGKYRLTEVKRMLSHPYIKY------LSENAPELMANLEENKHYFPTRKEL 414

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                                                         L            NL
Sbjct: 415  S----------------------------------------VDAGLTLVFKELVDDSTNL 434

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             +++W    +  +     D               TL +   ++I     ++     +  +
Sbjct: 435  YLTEWILEILQLIGKNGRDSEDAFFQ-ESVFRMYTLMNRLHELIH-SGDLRIQLTTYEKL 492

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            I +LI   ++    E +  + I+G LE+R L+FD +++   NEG  PK      F+   +
Sbjct: 493  ILQLIQNTSIPFHGEPAEGIQIMGVLETRNLDFDHILILSCNEGNMPKGVNDVSFIPYSI 552

Query: 669  QSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIP-TIASRWLQRLLVLGGTD 726
            +    L T +  +   A+ F         +  T +        +  SR++ ++LV  G  
Sbjct: 553  REAYGLTTVKHKVAIYAYYFHRLLQRASDITLTYNNSTEGSHKSEMSRFMLQMLVESGHP 612

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                    GQ             +    ++ +    +       S + I + +      Y
Sbjct: 613  IQKIAMLSGQEIKH--------HEAHPIEKKEMVMEVLYNMNQISPTAINRYMRCQLQFY 664

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----------TPEINHLMK 836
               I KL        D D    G +FH     +     +++              + L++
Sbjct: 665  YNTIAKLYEPEP-DNDIDNRMFGNIFHRSAELIYTSLQHESKWIEPTELNKLRTKSQLLE 723

Query: 837  QIIDSHFEKENLPP----------HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
            + +D  F +E               + +I R +        L+ + +  +    + +   
Sbjct: 724  RFVDQAFYEEIYKSKDKVRPIEYNGLQLINRKVIIDYLKRLLKID-EALAPFRILSLEER 782

Query: 887  AKMAI------ESIGIHLTGFADRIDL--LKSG--FVDITDYKTGDNPK--KETAQKLID 934
                I          I + G  DR+D      G   + + DYKTG          + +  
Sbjct: 783  VNTTISFETAQGLKTITVGGIIDRLDEVTDPDGTHRIRVVDYKTGRPATSVPTDVEDIFS 842

Query: 935  ------------PQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDC--ITNDKK 979
                         Q  L A  ++           V+  L +I+       D   + + +K
Sbjct: 843  DDNLTEKHKDYYLQTFLYANIVRQHQELNPHGLPVSPALLFIQRNPGDDFDPTLLLSKEK 902

Query: 980  KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                   S    K+L +++T + +   PF        K      Y  + 
Sbjct: 903  VSDIGTYSSDFSKHLQQVLTDMYDSSHPFT--PTQDNKRCTYCPYKRIC 949


>gi|237709836|ref|ZP_04540317.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229455929|gb|EEO61650.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 959

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 144/1065 (13%), Positives = 296/1065 (27%), Gaps = 164/1065 (15%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L   T              LA   +  P KRA         + +       P
Sbjct: 4    FLKLVAADLYKHTEGN-----------LAHTAVVFPNKRAGLFFNEYLAQESDS-PIWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               S+ ++       ++     L            +  L  I+R +              
Sbjct: 52   AYVSISELFRSLSPWEVGDPVKL------------VCELYKIFRRET------------- 86

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                +  +  +  + L    D  +      + L +              D          
Sbjct: 87   QSTETLDDFYFWGEMLISDFDDADKNRVDTDKLFS-----NLQDLRNIMDDYTFIDDEQE 141

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            E + +   +  +  + AL                I  G   S+ +       +       
Sbjct: 142  EAIRQFFQNFSIERRTALKERFISLWNVLGN---IYKGFRESLASQNIAYEGM------- 191

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-N 315
                     +   +   +                        L   L    + V     +
Sbjct: 192  ---------MYRHVIEHLDVDKLPYEKYIFVGFNVLNKVEHTLFTQLKDAGKAVFYWDYD 242

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                   R  V  ++      +       L  ++        +V  I +  E  +A  + 
Sbjct: 243  EFYMKENRQAVTHEAGEFIRRNLRDFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLP 302

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              +R +L   +K++A++  +  L + V   L     +++I+ G PLS T   S L +LL 
Sbjct: 303  QWIRNNLTTPEKETAVVLCNEALLQPVLHSLPAEVKHVNITMGFPLSQTPVYSFLIALLE 362

Query: 436  AIFKLN-------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
                          F ++ TL+KHP  +    +  L       E    R N+      +L
Sbjct: 363  LHTHGFNFKSGRYTFQSVVTLLKHPYTRQLTGQAELL------EKELTRNNRFYPLPGEL 416

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-CGN 547
                                                + + +  TPL              
Sbjct: 417  GKD---------------------------------EFLTRLFTPLSGNLNLCIRLSETL 443

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              ++   +   +  ++          +L+             +  E    +   +  +  
Sbjct: 444  QQVASIYQANTSGTEDTDAFNQLYRESLFKAYTTINRFRTLIEEDE----LTVQSETFRR 499

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            ++ +++    +    E +  + ++G LE+R L+F  L+L  +NEG  PK+   + F+   
Sbjct: 500  LLVKVLSTTNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYN 559

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725
            ++    + T E  I   A+ F         +    +   +       SR++ + L+    
Sbjct: 560  LRKAFGMTTIEHKIAVYAYYFYRLLQRAERITLIYNTSSDGLNRGEWSRFMLQFLIEWPH 619

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                   + GQ     +      T     +    F         +S S +   ++ P   
Sbjct: 620  PITRQFLEAGQSPQGTSSITVEKTPDVMRQMQSLFDVRANPKAKFSPSALNYYLDCPLKF 679

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMK----- 836
            Y R +  L        + D    G++FH     + K             +  L++     
Sbjct: 680  YYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKL 739

Query: 837  -QIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
               +D+ F+K               + +I   +  +     L+++    +    I   + 
Sbjct: 740  QDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDL-RYAPFTFIASEME 798

Query: 887  AKMAIESI---GI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935
                I+     G+    + G  DR+D  K G + I DYKTG         + L  P    
Sbjct: 799  VDEPIDIQTPKGVIKSRIGGIIDRMD-SKDGTLRIVDYKTGGDADTPPHVESLFIPDKKR 857

Query: 936  -----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
                 Q  L AA +      Q   +    L YI          +    +     E  E  
Sbjct: 858  SNYVFQTFLYAAIMCR---KQPTMKIAPALLYIHRAATETYSPVIQMGESRKPKEAVEDF 914

Query: 991  -------LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                    + L  ++  + N E+ F     + +      ++  L 
Sbjct: 915  SKYEKEYRERLQGLLEEIFNPEKSFTQTEIIEK--CTYCDFKALC 957


>gi|254881837|ref|ZP_05254547.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641142|ref|ZP_07995845.1| hypothetical protein HMPREF9011_01442 [Bacteroides sp. 3_1_40A]
 gi|254834630|gb|EET14939.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387273|gb|EFV68149.1| hypothetical protein HMPREF9011_01442 [Bacteroides sp. 3_1_40A]
          Length = 959

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 145/1065 (13%), Positives = 297/1065 (27%), Gaps = 164/1065 (15%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L   T              LA   +  P KRA         + +       P
Sbjct: 4    FLKLVAADLYKHTKGN-----------LAHTAVVFPNKRAGLFFNEYLAQESDS-PIWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               S+ ++       ++     L            +  L  I+R +              
Sbjct: 52   AYVSISELFRSLSPWEVGDPVKL------------VCELYKIFRRET------------- 86

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                +  +  +  + L    D  +  +   + L +              D          
Sbjct: 87   QSTETLDDFYFWGEMLISDFDDADKNKVDTDKLFS-----NLQDLRNIMDDYTFIDDEQE 141

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            E + +   +  +  + AL                I  G   S+ +       +       
Sbjct: 142  EAIRQFFQNFSIERRTALKERFISLWDVLGN---IYKGFRESLASQNIAYEGM------- 191

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-N 315
                     +   +   +                        L   L    + V     +
Sbjct: 192  ---------MYRHVIEHLDVDKLPYEKYVFVGFNVLNKVEHTLFTQLKDAGKAVFYWDYD 242

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                   R  V  ++      +       L  ++        +V  I +  E  +A  + 
Sbjct: 243  EFYMKENRQAVTHEAGEFIRRNLRDFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLP 302

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              +R +L   +K++A++  +  L + V   L     +++I+ G PLS T   S L +LL 
Sbjct: 303  QWIRNNLTTPEKETAVVLCNEALLQPVLHSLPAEVKHVNITMGFPLSQTPVYSFLIALLE 362

Query: 436  AIFKLN-------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
                          F ++ TL+KHP  +    +  L       E    R N+      +L
Sbjct: 363  LHTHGFNFKSGRYTFQSVVTLLKHPYTRQLTGQAELL------EKELTRNNRFYPLPGEL 416

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-CGN 547
                                                + + +  TPL              
Sbjct: 417  GKD---------------------------------EFLTRLFTPLSGNLNLCIRLSETL 443

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              ++   +   +  ++          +L+             +  E    +   +  +  
Sbjct: 444  QQVAGIYQANTSGTEDTDAFNQLYRESLFKAYTTINRFRTLIEEDE----LTVQSETFRR 499

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            ++ +++    +    E +  + ++G LE+R L+F  L+L  +NEG  PK+   + F+   
Sbjct: 500  LLVKVLSATNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYN 559

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725
            ++    + T E  I   A+ F         +    +   +       SR++ + L+    
Sbjct: 560  LRKAFGMTTIEHKIAVYAYYFYRLLQRAERITLMYNTSSDGLNRGEWSRFMLQFLIEWPH 619

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                   + GQ     +      T     +    F         +S S +   ++ P   
Sbjct: 620  PITRQFLEAGQSPQGTSPITVEKTPDVMRRMQSLFDVRANPKAKFSPSALNYYLDCPLKF 679

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMK----- 836
            Y R +  L        + D    G++FH     + K             +  L++     
Sbjct: 680  YYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKL 739

Query: 837  -QIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
               +D+ F+K               I +I   +  +     L+++    +    I   + 
Sbjct: 740  QDYVDTAFKKLFFNVPQNEKPEYNGIQLINSAVIARYLKQLLQNDL-RYAPFTFIASEME 798

Query: 887  AKMAIESI---GI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935
                I+     G+    + G  DR+D  K G + I DYKTG         + L  P    
Sbjct: 799  VDEPIDIQTPKGVIKSRIGGIIDRMD-SKDGTLRIVDYKTGGDADTPPHVESLFIPDKKR 857

Query: 936  -----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
                 Q  L AA +      Q   +    L YI          +    +     E  E  
Sbjct: 858  SNYVFQTFLYAAIMCR---KQPTMKIAPALLYIHRAATETYSPVIQMGEPRKPKEAVEDF 914

Query: 991  -------LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                    + L  ++  + N E+ F     + +      ++  L 
Sbjct: 915  SKYEKEYRERLQGLLEEIFNPEKSFTQTEIIEK--CTYCDFKALC 957


>gi|237725570|ref|ZP_04556051.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436257|gb|EEO46334.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 959

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 144/1065 (13%), Positives = 296/1065 (27%), Gaps = 164/1065 (15%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L   T              LA   +  P KRA         + +       P
Sbjct: 4    FLKLVAADLYKHTEGN-----------LAHTAVVFPNKRAGLFFNEYLAQESDS-PIWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               S+ ++       ++     L            +  L  I+R +              
Sbjct: 52   AYVSISELFRSLSPWEMGDPVKL------------VCELYKIFRRET------------- 86

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                +  +  +  + L    D  +      + L +              D          
Sbjct: 87   QSTETLDDFYFWGEMLISDFDDADKNRVDTDKLFS-----NLQDLRNIMDDYTFIDDEQE 141

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            E + +   +  +  + AL                I  G   S+ +       +       
Sbjct: 142  EAIRQFFQNFSIERRTALKERFISLWNVLGN---IYKGFRESLASQNIAYEGM------- 191

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-N 315
                     +   +   +                        L   L    + V     +
Sbjct: 192  ---------MYRHVIEHLDVDKLPYEKYIFVGFNVLNKVEHTLFTQLKDAGKAVFYWDYD 242

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                   R  V  ++      +       L  ++        +V  I +  E  +A  + 
Sbjct: 243  EFYMKENRQAVTHEAGEFIRRNLRDFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLP 302

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              +R +L   +K++A++  +  L + V   L     +++I+ G PLS T   S L +LL 
Sbjct: 303  QWIRNNLTTPEKETAVVLCNEALLQPVLHSLPAEVKHVNITMGFPLSQTPVYSFLIALLE 362

Query: 436  AIFKLN-------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
                          F ++ TL+KHP  +    +  L       E    R N+      +L
Sbjct: 363  LHTHGFNFKSGRYTFQSVVTLLKHPYTRQLTGQAELL------EKELTRNNRFYPLPGEL 416

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-CGN 547
                                                + + +  TPL              
Sbjct: 417  GKD---------------------------------EFLTRLFTPLSGNLNLCIRLSETL 443

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              ++   +   +  ++          +L+             +  E    +   +  +  
Sbjct: 444  QQVASIYQANTSGTEDTDAFNQLYRESLFKAYTTINRFRTLIEEDE----LTVQSETFRR 499

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            ++ +++    +    E +  + ++G LE+R L+F  L+L  +NEG  PK+   + F+   
Sbjct: 500  LLVKVLSATNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYN 559

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725
            ++    + T E  I   A+ F         +    +   +       SR++ + L+    
Sbjct: 560  LRKAFGMTTIEHKIAVYAYYFYRLLQRAERITLMYNTSSDGLNRGEWSRFMLQFLIEWPH 619

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                   + GQ     +      T     +    F         +S S +   ++ P   
Sbjct: 620  PITRQFLEAGQSPQGTSPITVEKTPDVMRRMQSLFDVRANPKAKFSPSALNYYLDCPLKF 679

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMK----- 836
            Y R +  L        + D    G++FH     + K             +  L++     
Sbjct: 680  YYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKL 739

Query: 837  -QIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
               +D+ F+K               + +I   +  +     L+++    +    I   + 
Sbjct: 740  QDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDL-RYAPFTFIASEME 798

Query: 887  AKMAIESI---GI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935
                I+     G+    + G  DR+D  K G + I DYKTG         + L  P    
Sbjct: 799  VDEPIDIQTPKGVIKSRIGGIIDRMD-SKDGTLRIVDYKTGGDADTPPHVESLFIPDKKR 857

Query: 936  -----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
                 Q  L AA +      Q   +    L YI          +    +     E  E  
Sbjct: 858  SNYVFQTFLYAAIMCR---KQPTMKIAPALLYIHRAATETYSPVIQMGEPRKPKEAVEDF 914

Query: 991  -------LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                    + L  ++  + N E+ F     + +      ++  L 
Sbjct: 915  SKYEKEYRERLQGLLEEIFNPEKSFTQTEIIEK--CTYCDFKALC 957


>gi|190570669|ref|YP_001975027.1| hypothetical protein WPa_0219 [Wolbachia endosymbiont of Culex
            quinquefasciatus Pel]
 gi|190356941|emb|CAQ54327.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex
            quinquefasciatus Pel]
          Length = 932

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 193/1090 (17%), Positives = 363/1090 (33%), Gaps = 224/1090 (20%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             VFT+  +      +   L+     E  R        +  + I +P KR +  L S F  
Sbjct: 3    RVFTVNVN----ESLFDVLVQHIFSEYER------EKIPEIKIILPCKRDVIALLSAFKN 52

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
                ++ ILP I SL ++ EE    DL+L+ +    ++  +R L L + IL W  K  D 
Sbjct: 53   Y---RTIILPEIVSLENIDEE----DLILNLDRVKVINPTKRTLLLIQFILEWNKKNNDN 105

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
                               I L  +L  ++   + E           + +        A+
Sbjct: 106  FP-----------------IDLVYSLPSLLQYTQIEG----------DYQLDEHSKKVAN 138

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            F+ +  K W++ L  L     + ++   +      L K     +I  G  G       L+
Sbjct: 139  FINLLIKTWSKTLKGLGVIDILKHKNDYINNMINFLQKDQ--HMIFIGI-GKGEIYKLLI 195

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              + + P G I+LP L+  +    W ++ +K             H Q+ L  LLD+L + 
Sbjct: 196  KAIYDLPFGKIILPNLNLKMNEKDWKSLDKK-------------HYQHCLKDLLDYLKVD 242

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-----DILENKIPNIQKCFSDVAL 361
            R DV  L    + +   S           T           D   +          ++ +
Sbjct: 243  RRDVSFLSEACSGVIPVSSTGMTEERAGITGSPEEYLDYIFDTTADLSEVGGGSIENIEV 302

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            I  D+  EEA   ++ ++   +E  + ++L   D+ LA R+   ++              
Sbjct: 303  ITCDSREEEAQVTSLIIK---NEGYENASLFVFDKLLADRMACTISENYSY--------- 350

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                  ++L   +  +    + +A+ +L+KH L  FG+ ++  +R  +  E+  LR    
Sbjct: 351  -----VTLLLYSIEILNSKWNGVALLSLLKHRLVTFGYAQEEYTRILSEFEIEVLRSFNT 405

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
            +     + ++   +    K +  +   + ++                    PL+      
Sbjct: 406  NGLKDIINAINTCKKLRHKEDILIIISKLKII-----------------FNPLLYL---- 444

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA- 600
                 N  I D     + C+  +         N+ F E    + +     +     +   
Sbjct: 445  ----VNYPIFDVASAHLQCVNVLS--------NINFLELNGEIGNFTRDFLNACEDVAIK 492

Query: 601  -NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   +  I+   +  +   P+             +  L +   ++L G N+    +   
Sbjct: 493  CSLELYSQILILFLKRKFFSPENN---------LDKFSLYHNKVVVLAGFNDIPNFQ--- 540

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             NPFLS + +   NL + ++  G   +      G   +  TR + +       S  L+RL
Sbjct: 541  -NPFLSALNREKFNLPSVQEEQGYFLYTLRNLFGAGKVYITRLVSD-----RKSILLRRL 594

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIK 776
             VL        L++    Y +W R L+         +P P P  E +    +  S S ++
Sbjct: 595  EVL--------LQEPKYPYRNWLRILNTPECIVPCTQPMPKPKTEVRQAKMQVMSCSAVE 646

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
            +LI +PY+ Y   IL L  +      P   + GT+ HNI+   ++             + 
Sbjct: 647  KLIRNPYSFYVEYILNLRQLKDLNFKPSILEFGTMVHNILARYLRN---------EKSLM 697

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA---IES 893
             I    F           +W     +I  SF+E +   ++   ++ +          I +
Sbjct: 698  NIAREIFSSNRFH--FSNMWWVRLQRIIQSFVELD---RTGNNQVELEKSFSYPIFHIPA 752

Query: 894  IGIHLTG--------------------------------------------------FAD 903
                L G                                                    D
Sbjct: 753  RDTQLRGCCTTSTKNKGVIPVLDYLDPKNLIANEHTRQLCNKSWSDTRMTEEILLTARCD 812

Query: 904  RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            R++ L  G V I DYK G  P  E       PQL L+A A++         ++V+ L Y 
Sbjct: 813  RVEYLPGGQVAIIDYKLGSPPSNEEVMSGFFPQLILQALAVEY-----TTKKEVSELAYW 867

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
            +L           D ++        +    L + ++       PFI+     +     + 
Sbjct: 868  KLDYDKIKVIALKDYRQK-----MHEFQNILPDFLSNYLRDTTPFIASPYFDKFLRF-NI 921

Query: 1024 YDHLARVAEW 1033
            Y  L R+ EW
Sbjct: 922  YKQLERIGEW 931


>gi|213019082|ref|ZP_03334889.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex
            quinquefasciatus JHB]
 gi|212995191|gb|EEB55832.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex
            quinquefasciatus JHB]
          Length = 936

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 193/1090 (17%), Positives = 363/1090 (33%), Gaps = 224/1090 (20%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             VFT+  +      +   L+     E  R        +  + I +P KR +  L S F  
Sbjct: 7    RVFTVNVN----ESLFDVLVQHIFSEYER------EKIPEIKIILPCKRDVIALLSAFKN 56

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
                ++ ILP I SL ++ EE    DL+L+ +    ++  +R L L + IL W  K  D 
Sbjct: 57   Y---RTIILPEIVSLENIDEE----DLILNLDRVKVINPTKRTLLLIQFILEWNKKNNDN 109

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
                               I L  +L  ++   + E           + +        A+
Sbjct: 110  FP-----------------IDLVYSLPSLLQYTQIEG----------DYQLDEHSKKVAN 142

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            F+ +  K W++ L  L     + ++   +      L K     +I  G  G       L+
Sbjct: 143  FINLLIKTWSKTLKGLGVIDILKHKNDYINNMINFLQKDQ--HMIFIGI-GKGEIYKLLI 199

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              + + P G I+LP L+  +    W ++ +K             H Q+ L  LLD+L + 
Sbjct: 200  KAIYDLPFGKIILPNLNLKMNEKDWKSLDKK-------------HYQHCLKDLLDYLKVD 246

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-----DILENKIPNIQKCFSDVAL 361
            R DV  L    + +   S           T           D   +          ++ +
Sbjct: 247  RRDVSFLSEACSGVIPVSSTGMTEERAGITGSPEEYLDYIFDTTADLSEVGGGSIENIEV 306

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            I  D+  EEA   ++ ++   +E  + ++L   D+ LA R+   ++              
Sbjct: 307  ITCDSREEEAQVTSLIIK---NEGYENASLFVFDKLLADRMACTISENYSY--------- 354

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                  ++L   +  +    + +A+ +L+KH L  FG+ ++  +R  +  E+  LR    
Sbjct: 355  -----VTLLLYSIEILNSKWNGVALLSLLKHRLVTFGYAQEEYTRILSEFEIEVLRSFNT 409

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
            +     + ++   +    K +  +   + ++                    PL+      
Sbjct: 410  NGLKDIINAINTCKKLRHKEDILIIISKLKII-----------------FNPLLYL---- 448

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA- 600
                 N  I D     + C+  +         N+ F E    + +     +     +   
Sbjct: 449  ----VNYPIFDVASAHLQCVNVLS--------NINFLELNGEIGNFTRDFLNACEDVAIK 496

Query: 601  -NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   +  I+   +  +   P+             +  L +   ++L G N+    +   
Sbjct: 497  CSLELYSQILILFLKRKFFSPENN---------LDKFSLYHNKVVVLAGFNDIPNFQ--- 544

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             NPFLS + +   NL + ++  G   +      G   +  TR + +       S  L+RL
Sbjct: 545  -NPFLSALNREKFNLPSVQEEQGYFLYTLRNLFGAGKVYITRLVSD-----RKSILLRRL 598

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIK 776
             VL        L++    Y +W R L+         +P P P  E +    +  S S ++
Sbjct: 599  EVL--------LQEPKYPYRNWLRILNTPECIVPCTQPMPKPKTEVRQAKMQVMSCSAVE 650

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
            +LI +PY+ Y   IL L  +      P   + GT+ HNI+   ++             + 
Sbjct: 651  KLIRNPYSFYVEYILNLRQLKDLNFKPSILEFGTMVHNILARYLRN---------EKSLM 701

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA---IES 893
             I    F           +W     +I  SF+E +   ++   ++ +          I +
Sbjct: 702  NIAREIFSSNRFH--FSNMWWVRLQRIIQSFVELD---RTGNNQVELEKSFSYPIFHIPA 756

Query: 894  IGIHLTG--------------------------------------------------FAD 903
                L G                                                    D
Sbjct: 757  RDTQLRGCCTTSTKNKGVIPVLDYLDPKNLIANEHTRQLCNKSWSDTRMTEEILLTARCD 816

Query: 904  RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            R++ L  G V I DYK G  P  E       PQL L+A A++         ++V+ L Y 
Sbjct: 817  RVEYLPGGQVAIIDYKLGSPPSNEEVMSGFFPQLILQALAVEY-----TTKKEVSELAYW 871

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
            +L           D ++        +    L + ++       PFI+     +     + 
Sbjct: 872  KLDYDKIKVIALKDYRQK-----MHEFQNILPDFLSNYLRDTTPFIASPYFDKFLRF-NI 925

Query: 1024 YDHLARVAEW 1033
            Y  L R+ EW
Sbjct: 926  YKQLERIGEW 935


>gi|294775535|ref|ZP_06741045.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|294450585|gb|EFG19075.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 959

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 144/1065 (13%), Positives = 297/1065 (27%), Gaps = 164/1065 (15%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L   T              LA   +  P KRA         + +       P
Sbjct: 4    FLKLVAADLYKHTEGN-----------LAHTAVVFPNKRAGLFFNEYLAQESDS-PIWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               S+ ++       ++     L            +  L  I+R +              
Sbjct: 52   AYVSISELFRSLSPWEVGDPVKL------------VCELYKIFRRET------------- 86

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                +  +  +  + L    D  +  +   + L +              D          
Sbjct: 87   QSTETLDDFYFWGEMLISDFDDADKNKVDTDKLFS-----NLQDLRNIMDDYTFIDDEQE 141

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            E + +   +  +  + AL                I  G   S+ +       +       
Sbjct: 142  EAIRQFFQNFSIERRTALKERFISLWDVLGN---IYKGFRESLASQNIAYEGM------- 191

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-N 315
                     +   +   +                        L   L    + V     +
Sbjct: 192  ---------MYRHVIEHLDVDKLPYEKYVFVGFNVLNKVEHTLFTQLKDVGKAVFYWDYD 242

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                   R  V  ++      +       L  ++        +V  I +  E  +A  + 
Sbjct: 243  EFYMKENRQAVTHEAGEFIRRNLRDFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLP 302

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              +R +L   +K++A++  +  L + V   L     +++I+ G PLS T   S L +LL 
Sbjct: 303  QWIRNNLTTPEKETAVVLCNEALLQPVLHSLPAEVKHVNITMGFPLSQTPVYSFLIALLE 362

Query: 436  AIFKLN-------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
                          F ++ TL+KHP  +    +  L       E    R N+      +L
Sbjct: 363  LHTHGFNFKSGRYTFQSVVTLLKHPYTRQLTGQAELL------EKELTRNNRFYPLPGEL 416

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-CGN 547
                                                + + +  TPL              
Sbjct: 417  GKD---------------------------------EFLTRLFTPLSGNLNLCIRLSETL 443

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              ++   +   +  ++          +L+             +  E    +   +  +  
Sbjct: 444  QQVAGIYQANTSGTEDTDAFNQLYRESLFKAYTTINRFRTLIEEDE----LTVQSETFRR 499

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            ++ +++    +    E +  + ++G LE+R L+F  L+L  +NEG  PK+   + F+   
Sbjct: 500  LLVKVLSATNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYN 559

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725
            ++    + T E  I   A+ F         +    +   +       SR++ + L+    
Sbjct: 560  LRKAFGMTTIEHKIAVYAYYFYRLLQRAERITLMYNTSSDGLNRGEWSRFMLQFLIEWPH 619

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                   + GQ     +      T     +    F         +S S +   ++ P   
Sbjct: 620  PITRQFLEAGQSPQGTSPITVEKTPDVMRRMQSLFDVRANPKAKFSPSALNYYLDCPLKF 679

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMK----- 836
            Y R +  L        + D    G++FH     + K             +  L++     
Sbjct: 680  YYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKL 739

Query: 837  -QIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
               +D+ F+K               + +I   +  +     L+++    +    I   + 
Sbjct: 740  QDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDL-RYAPFTFIASEME 798

Query: 887  AKMAIESI---GI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935
                I+     G+    + G  DR+D  K G + I DYKTG         + L  P    
Sbjct: 799  VDEPIDIQTPKGVIKSRIGGIIDRMD-SKDGTLRIVDYKTGGDADTPPHVESLFIPDKKR 857

Query: 936  -----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
                 Q  L AA +      Q   +    L YI          +    +     E  E  
Sbjct: 858  SNYVFQTFLYAAIMCR---KQPTMKIAPALLYIHRAATETYSPVIQMGEPRKPKEAVEDF 914

Query: 991  -------LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                    + L  ++  + N E+ F     + +      ++  L 
Sbjct: 915  SKYEKEYRERLQGLLEEIFNPEKSFTQTEIIEK--CTYCDFKALC 957


>gi|167762882|ref|ZP_02435009.1| hypothetical protein BACSTE_01246 [Bacteroides stercoris ATCC 43183]
 gi|167699222|gb|EDS15801.1| hypothetical protein BACSTE_01246 [Bacteroides stercoris ATCC 43183]
          Length = 963

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 138/1083 (12%), Positives = 303/1083 (27%), Gaps = 196/1083 (18%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L +    +           L+   I  P KRA           +  +    P
Sbjct: 4    FLQSVAQDLYSKIGND-----------LSRTAIVFPNKRASLFFNEYLAAQSD-RPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               ++ ++              L   V  + ++           ++ P      + E  +
Sbjct: 52   AYVNISELFRSLSPLKPGDPIRL---VCELYKVFR-----EETHSEEPLDDFYFWGELLI 103

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL------------- 183
            S        +  A  L   +  ++     ++ L   + E    ++               
Sbjct: 104  SDFDDADKNLVDADKLFSNLQDLKNIMDDYDFLDQEQEEAIQQFFQNFSIDKRTQLKEKF 163

Query: 184  --AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                D L    +++ + L EL  +        ++        +      +  G       
Sbjct: 164  ISLWDKLGDIYRHYRKNLSELGIAYEGMMYRHVIEELDT--DRLRYDRYVFVGFNVLNKV 221

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
                   + +    A+     D                    +   +   P Y       
Sbjct: 222  ETHFFQRLQDAGK-AMFYWDYDVFY-----------------TRLPHEQQPPYVHEAGEF 263

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L   +    +L                                     ++ +    +  
Sbjct: 264  ILRNLKLFPNQLPET--------------------------------AFDVLRHPKKIRF 291

Query: 362  IEADNEREEAISIAIALR-----MSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
            I A  E  +A  +   +R      +    +K++A++  +  L   V   +     N++I+
Sbjct: 292  ISAPTENAQARYLPQWVRTVVKSDTEASKEKENAIVLCNEALLLPVLHSIPPEVENVNIT 351

Query: 417  AGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
             G PL+ T   S + +L+               + A   ++KHP  +       LS    
Sbjct: 352  MGFPLAQTPVYSYINALMELQTTGYRRDTGRYTYEAALAVLKHPYTR------QLSATAE 405

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
             LE    + N+      +LK                           +     +  ++ +
Sbjct: 406  DLEKQLTKDNRFYPLPSELKK----------------DAFLEQVFTPQNGTAAICRYLTE 449

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             +  +      +                                      +G TL +   
Sbjct: 450  LLREVAVIYRQEKDEEDIF----------------------NQLYRESLFKGYTLINRLL 487

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
             +IE    +  +      ++ RL+    +    E +  + ++G LE+R L+F  LI+  L
Sbjct: 488  SLIEN-DGLSLHTDTLKRLMNRLLTATNIPFHGEPAIGMQVMGVLETRNLDFRNLIMLSL 546

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN- 707
            NEG  PK    + F+   ++    + T E      A+ F        ++    +   +  
Sbjct: 547  NEGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNSVYAYYFYRLIQRAENITLLYNTASDGL 606

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                 SR++ + LV    D      + GQ      +   + T +   +    +       
Sbjct: 607  NRGEMSRFMLQFLVESPHDISRQYLEAGQSPQQSLKIEIHKTDEVLQRMYNAYDIRRHPN 666

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI------- 820
              +S S +   ++     Y R +  L        + D    GT+FH     +        
Sbjct: 667  ALFSPSALNTYLDCRLRFYYRYVAGLKAPDEVSAEIDSALFGTIFHRSAELVYQDLTANG 726

Query: 821  KKRINKNTPEINH---LMKQIIDSHFEKENLPP---------HIDIIWRHLFHKISHSFL 868
            K+   ++  ++      ++  +D+ F++E                +I   +        L
Sbjct: 727  KEIRREDLEQLLRNDVRLQAYVDTAFKEEFFHVPAGEQPEYNGTQLIHSKVIASYLRQLL 786

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIES------IGIHLTGFADRIDLLKSGFVDITDYKTGD 922
             ++ +  +      +       +E       + +++ G  DR+D      + I DYKTG 
Sbjct: 787  RNDLQ-YAPFRMEGMEQKVTETLEIETPSGMLPLNIGGTIDRMDSKGD-TLRIVDYKTGG 844

Query: 923  NP-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
             P   E+ ++L  P         Q  L AA +      ++      +L YI         
Sbjct: 845  TPKTPESIEQLFTPADNRPNYIFQTFLYAAIMCRKQGLKVAP----SLLYIHRAASESYS 900

Query: 973  CITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
             +                    ++  + L  ++  + N E+PF        K     ++ 
Sbjct: 901  PVIEMGAPRQPKVPVNNFAFYEDEFRERLSALLQEIYNPEEPFTQTEDA--KKCEYCDFK 958

Query: 1026 HLA 1028
             L 
Sbjct: 959  RLC 961


>gi|150005967|ref|YP_001300711.1| hypothetical protein BVU_3465 [Bacteroides vulgatus ATCC 8482]
 gi|149934391|gb|ABR41089.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 959

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 144/1065 (13%), Positives = 297/1065 (27%), Gaps = 164/1065 (15%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L   T              LA   +  P KRA         + +       P
Sbjct: 4    FLKLVAADLYKHTEGN-----------LAHTAVVFPNKRAGLFFNEYLAQESES-PIWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               S+ ++       ++     L            +  L  I+R +              
Sbjct: 52   AYVSISELFRSLSPWEVGDPVKL------------VCELYKIFRRET------------- 86

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                +  +  +  + L    D  +  +   + L +              D          
Sbjct: 87   QSTETLDDFYFWGEMLISDFDDADKNKVDTDKLFS-----NLQDLRNIMDDYTFIDDEQE 141

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            E + +   +  +  + AL                I  G   S+ +       +       
Sbjct: 142  EAIRQFFQNFSIERRTALKERFISLWDVLGN---IYKGFRESLASQNIAYEGM------- 191

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-N 315
                     +   +   +                        L   L    + V     +
Sbjct: 192  ---------MYRHVIEHLDVDKLPYEKYVFVGFNVLNKVEHTLFTQLKDAGKAVFYWDYD 242

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                   R  V  ++      +       L  ++        +V  I +  E  +A  + 
Sbjct: 243  EFYMKENRQAVTHEAGEFIRRNLRDFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLP 302

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              +R +L   +K++A++  +  L + V   L     +++I+ G PLS T   S L +LL 
Sbjct: 303  QWIRNNLTTPEKETAVVLCNEALLQPVLHSLPAEVKHVNITMGFPLSQTPVYSFLIALLE 362

Query: 436  AIFKLN-------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
                          F ++ TL+KHP  +    +  L       E    R N+      +L
Sbjct: 363  LHTHGFNFKSGRYTFQSVVTLLKHPYTRQLTGQAELL------EKELTRNNRFYPLPGEL 416

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-CGN 547
                                                + + +  TPL              
Sbjct: 417  GKD---------------------------------EFLTRLFTPLSGNLNLCIRLSETL 443

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              ++   +   +  ++          +L+             +  E    +   +  +  
Sbjct: 444  QQVAGIYQANTSGTEDTDAFNQLYRESLFKAYTTINRFRTLIEEDE----LTVQSETFRR 499

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            ++ +++    +    E +  + ++G LE+R L+F  L+L  +NEG  PK+   + F+   
Sbjct: 500  LLVKVLSATNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYN 559

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725
            ++    + T E  I   A+ F         +    +   +       SR++ + L+    
Sbjct: 560  LRKAFGMTTIEHKIAVYAYYFYRLLQRAERITLMYNTSSDGLNRGEWSRFMLQFLIEWPH 619

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                   + GQ     +      T     +    F         +S S +   ++ P   
Sbjct: 620  PITRQFLEAGQSPQGTSPITVEKTPDVMRRMQSLFDVRANPKAKFSPSALNYYLDCPLKF 679

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMK----- 836
            Y R +  L        + D    G++FH     + K             +  L++     
Sbjct: 680  YYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKL 739

Query: 837  -QIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
               +D+ F+K               + +I   +  +     L+++    +    I   + 
Sbjct: 740  QDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDL-RYAPFTFIASEME 798

Query: 887  AKMAIESI---GI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935
                I+     G+    + G  DR+D  K G + I DYKTG         + L  P    
Sbjct: 799  VDEPIDIQTPKGVIKSRIGGIIDRMD-SKDGTLRIVDYKTGGDADTPPHVESLFIPDKKR 857

Query: 936  -----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
                 Q  L AA +      Q   +    L YI          +    +     E  E  
Sbjct: 858  SNYVFQTFLYAAIMCR---KQPTMKIAPALLYIHRAATETYSPVIQMGEPRKPKEAVEDF 914

Query: 991  -------LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                    + L  ++  + N E+ F     + +      ++  L 
Sbjct: 915  SKYEKEYRERLQGLLEEIFNPEKSFTQTEIIEK--CTYCDFKALC 957


>gi|218130935|ref|ZP_03459739.1| hypothetical protein BACEGG_02537 [Bacteroides eggerthii DSM 20697]
 gi|317476246|ref|ZP_07935497.1| hypothetical protein HMPREF1016_02480 [Bacteroides eggerthii
            1_2_48FAA]
 gi|217987279|gb|EEC53610.1| hypothetical protein BACEGG_02537 [Bacteroides eggerthii DSM 20697]
 gi|316907657|gb|EFV29360.1| hypothetical protein HMPREF1016_02480 [Bacteroides eggerthii
            1_2_48FAA]
          Length = 963

 Score =  296 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 150/1089 (13%), Positives = 316/1089 (29%), Gaps = 208/1089 (19%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L +    +           L+   I  P KRA           +  +    P
Sbjct: 4    FLQTVAQDLYSKIGSD-----------LSRTAIVFPNKRASLFFNEYLAAESD-RPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               ++ ++  +           L            +  L  ++  +              
Sbjct: 52   AYVNISELFRQLSPLKSGDPIRL------------VCELYKVFCEETHSEEPLDDFYFWG 99

Query: 137  SLPIS--------PANAIWLAKNLADIIDIIETEE-KKWEDLHALK----------NEKY 177
             L IS          +A  L  NL D+ +I++  +    E   A++            + 
Sbjct: 100  ELLISDFDDVDKNLVDANRLFCNLQDLKNIMDNYDFLDKEQEEAIQQFFQNFSIDKRTQL 159

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
               ++   D L    +++ + L EL  +        ++      L        +  G   
Sbjct: 160  KEKFISLWDKLGDIYRHYRKNLSELGIAYEGMMYRHVIEGLDTGL--LRYDRYVFVGFNV 217

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                  R    + +    A+     D                 I  +   +   P Y   
Sbjct: 218  LNKVETRFFQLLQDAGK-AMFYWDYD-----------------IFYTRLPHEQQPPYVHE 259

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                 L   +    +L                                     +  +   
Sbjct: 260  AGEFILRNLKLFPNQLPET--------------------------------AFDALRHPK 287

Query: 358  DVALIEADNEREEAISIAIALR-----MSLDENKKKSALITADRNLARRVKLELTRFGIN 412
             V  I A  E  +A  +   +R      +    +K++A++  +  L   V   +     N
Sbjct: 288  KVRFISAPTENAQARYLPEWVRTVMKNDAETSKEKENAIVLCNETLLLPVLHSIPPEVEN 347

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLS 465
            ++I+ G PL+ T   S +++L+               + A+  ++KHP  +       LS
Sbjct: 348  VNITMGFPLAQTPVYSYISALMELQTTGYRRDTGRYTYEAVLAILKHPYTR------QLS 401

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
             A + LE    + N+      +LK                           +     +  
Sbjct: 402  AAADDLEHQLTKDNRFYPLPSELKK----------------DAFLERVFTPQNGIASICR 445

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK--T 583
            ++ + +  +      +                         DE+     L+ E   K  T
Sbjct: 446  YLTELLREVAVVYRQEK------------------------DENDIFNQLYRESLFKSYT 481

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            L +    +IE    +         ++ RL+    +    E +  + ++G LE+R L+F  
Sbjct: 482  LVNRLLNLIE-SDGLTLQTDTLKRLMNRLLTSTNIPFHGEPAIGMQVMGVLETRNLDFRN 540

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRS 702
            LI+  LNEG  PKN   + F+   ++    + T E      A+ F        ++    +
Sbjct: 541  LIMLSLNEGQLPKNGGDSSFIPYNLRKAFGMTTIEHKNSVYAYYFYRLIQRAENITLLYN 600

Query: 703  LRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
               +       SR++ + LV    D      + GQ          + T +   +    + 
Sbjct: 601  TASDGLNRGEMSRFMLQFLVESPHDISREYLEAGQSPQHSLAIEIHKTNEVLQRMYNAYD 660

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI- 820
              +     +S S +   ++     Y R +  L        + D    GT+FH     +  
Sbjct: 661  IRQHPNALFSPSALNTYLDCRLKFYYRYVAGLKAPDEVSAEIDSALFGTIFHRSAELVYQ 720

Query: 821  ------KKRINKNTPEINH---LMKQIIDSHFEKENLPPHIDI---------IWRHLFHK 862
                  K+   ++  ++      ++  +D+ F++E      +          I   +   
Sbjct: 721  DLTTNGKEIRKEDLEQLLRNDVKLQTYVDNAFKEELFHVQANEQPEYNGTQLIHSKVIAS 780

Query: 863  ISHSFLEHEEKIQSSIEKIFVN------IPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
                 L ++    +      +       +  +  +  + +++ G  DR+D  K   + I 
Sbjct: 781  YLRQLLRNDL-HYAPFHMEAMEQKVTETVEIETPLGILPLNIGGTIDRMD-SKDDTLRIV 838

Query: 917  DYKTGDNP-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
            DYKTG  P   E  ++L  P         Q  L AA +      ++      +L YI   
Sbjct: 839  DYKTGGTPRTPENIEQLFVPADNRPNYIFQTFLYAAIMCRKQTLKVAP----SLLYIHRA 894

Query: 967  QKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
                   +                    ++  + L  ++  + N E+ F       +   
Sbjct: 895  ASENYSPVIEMGAPRQPKIPVSNFAFYEDEFRERLSALLKEIYNPEETFSQTEDNGK--C 952

Query: 1020 IQSEYDHLA 1028
               ++  L 
Sbjct: 953  EYCDFRSLC 961


>gi|323345277|ref|ZP_08085500.1| hypothetical protein HMPREF0663_12036 [Prevotella oralis ATCC 33269]
 gi|323093391|gb|EFZ35969.1| hypothetical protein HMPREF0663_12036 [Prevotella oralis ATCC 33269]
          Length = 973

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 133/1102 (12%), Positives = 302/1102 (27%), Gaps = 222/1102 (20%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
             F   +   ++                 L+ + +  P KRA   +    + +   K    
Sbjct: 3    AFLEYVAEDIIRKYGTN-----------LSKIVVVFPNKRASLFMNEYLVRV-AGKPIWA 50

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
            P   ++ ++              L   + ++ +           +          + +  
Sbjct: 51   PTYITISELFRRHSKLMEGDQIKL---ICDLHKTFT-----ACTKIDETLDHFYGWGQLL 102

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA------------LKNEKYGMWWLL 183
            L+        +  A  +   +  I   +     L                 E        
Sbjct: 103  LADFDDLDKNMADAHQVFANLKNIHEFD-DVSYLTDNQKKALQKFFNNFNEEHNSELKQR 161

Query: 184  AADF---LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
                    +     +   L     +        ++    +  +       I  G      
Sbjct: 162  FLSLWSNFETIYHDYNLCLERQGLAYEGALYRKVV---LDKDIVFEYDTYIFVGFNMMQK 218

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
            A   +   +                                                   
Sbjct: 219  AELTICDRLMKEGK---------------------------------------ARFYWDF 239

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
            D              +       +           +      D+ +  I +      ++ 
Sbjct: 240  DR-----------YFMPKSPAHNTHEAGHFVSQYLSRYPNELDVTDGAIYDNLNRKQEIT 288

Query: 361  LIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
             + A  E  +A  I+  L+     +  +K+A++ AD  L + V   L     N++I+ G 
Sbjct: 289  YLSATTEDAQARYISRWLQDEKRVQAGRKTAIVLADEGLLQTVIHCLPDTVKNVNITTGY 348

Query: 420  PLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            PL+ +  SS + +L+                  ++ +++HP A F             L 
Sbjct: 349  PLTLSPVSSFINTLIQLQTVGHVSNTDKFRLRNVSAVLRHPYAVFVSE------NCVDLL 402

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
                   +    I +L +                                          
Sbjct: 403  KNLQENRRYYPSIRELATD----------------------------------------D 422

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK--TLSSLFSK 590
             L     + +   G+ ++       +  L+ + +        L+ E   +  TL +  + 
Sbjct: 423  NLAFLFKDISRLDGDRNL-QLANWMIELLRRIGIRAKEDYDPLFKESLFRMYTLLNRLAG 481

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +IE    +  + + +  +I++LI   ++    E +  L I+G LE+R L+FD +++   N
Sbjct: 482  LIEN-GDLTVDGVTFQRLISQLIQSTSIPFHGEPAIGLQIMGVLETRNLDFDHILVLSCN 540

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIP 709
            EG  PK      F+   ++    L T +  +   A+ F      +  +    +    +  
Sbjct: 541  EGNMPKGVNDASFIPYSIRKAFGLTTIDNKVAIYAYYFYSLLQRSSDITLAYNTAAEDGK 600

Query: 710  T-IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
            T   SR++ +L++    +    + + GQ  +   R           ++      +     
Sbjct: 601  TGEMSRFMLQLMIESEFNIKYVMLRAGQKVVMPHR--------TPIEKTDEIITILNSFT 652

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHNIITELIKKRINKN 827
              S + I + +      Y   +L +      +    D    G +FH           +K 
Sbjct: 653  KISPTAINRYLRCQLQFYYNMVLGIKEPDEDEGGEIDNRIFGNIFHRSAELAYLHFASKE 712

Query: 828  T------------------PEINHLM------KQIIDSHFEKENL----------PPHID 853
                                +++ L+       +I+D  F +E               + 
Sbjct: 713  EIEEADGKLKLIRSLQIRKEDLDALLNNKAVIAEIVDRAFAEELFKLKEKHASIEYNGLQ 772

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIG----IHLTGFADRID- 906
            II R +        LE +           +       +    +G    + + G+ DR+D 
Sbjct: 773  IINREVIIGYLRQLLEIDR-RLVPFTIKALEQDVYATIEFPVLGESRVLKIGGYIDRLDE 831

Query: 907  --LLKSGFV-DITDYKTGDNPKK-----ETAQ-------KLID--PQLSLEAAALKAGSF 949
                ++G    + DYKTG+ P K     E          +  D   Q    +  ++    
Sbjct: 832  VKRDETGRYIRVIDYKTGNTPSKTTNTIEDVFSTDDISLRHTDYFLQSIFYSIIVRHSEQ 891

Query: 950  SQIDCRKVA-NLFYIR--LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                   V+  L +I+  + + +        +K    +E  E+  + L  ++  + + + 
Sbjct: 892  WNDRRLPVSPALLFIQHSMGENYDPVLKLGKEKINDVEEYYEEFKERLKNVLREIFDPKT 951

Query: 1007 PFISHLRLSEKSNIQSEYDHLA 1028
             F        K      Y+ L 
Sbjct: 952  DF--SPTPDTKRCNACPYNRLC 971


>gi|329960509|ref|ZP_08298897.1| hypothetical protein HMPREF9446_00456 [Bacteroides fluxus YIT 12057]
 gi|328532739|gb|EGF59526.1| hypothetical protein HMPREF9446_00456 [Bacteroides fluxus YIT 12057]
          Length = 970

 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 150/1094 (13%), Positives = 303/1094 (27%), Gaps = 211/1094 (19%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L + T  +           L+   I  P KRA           +  +    P
Sbjct: 4    FLQLVAHDLYSKTGND-----------LSRTAIVFPNKRASLFFNEYLAAESD-RPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD----IIKDLYP 132
               S+ ++  +           L            +  L  ++R +            + 
Sbjct: 52   AYVSISELFRQLSPLKPGDPIRL------------VCELYKVFREETHSEETLDDFYFWG 99

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL--------- 183
            E  +S        +  A  L   +  ++     ++ L   + E    ++           
Sbjct: 100  ELLISDFDDVDKNLVDADKLFTNLQDLKNIMDDYDFLDKEQEEAIRQFFQNFSIEKRTEL 159

Query: 184  ------AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
                    D L    +++ + L  L  +        +M   A    K      I  G   
Sbjct: 160  KNKFISLWDKLGDIYRHYRKNLTGLGIAYEGMMYRNVMEQLAT--DKLHYERYIFVGFNV 217

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                       + N    A+     D                    +       P Y+  
Sbjct: 218  LNKVETEFFLRLQNAGK-ALFYWDYDVFY-----------------TRLPREQKPPYTHE 259

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                 L        +L                                     ++ +   
Sbjct: 260  AGEFILRNLELFPNQLPET--------------------------------AFDVLRKPK 287

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKS-----------ALITADRNLARRVKLEL 406
             V  I A  E  +A  +   ++   ++NK  +           A++  +  L   V   +
Sbjct: 288  QVRFISAPTENAQARYLPEWIKEMKEKNKNSTGKDGKWKEKENAVVLCNEALLLPVLHSI 347

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGF 459
                 N++I+ G PL+ T   S + SL+               + A+  ++KHP      
Sbjct: 348  PSEVKNVNITMGFPLAQTPVYSFINSLVELQTTGYRNDTGRYTYEAVLAILKHPYTCQLS 407

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                       LE    + N+      +L+                           +  
Sbjct: 408  SS------AEGLEKQLTKDNRFYPLPSELRQ----------------DAFLEQVFTPQNG 445

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
               L  ++   +  +      +                         D       L+ E 
Sbjct: 446  THALCRYLTDLLREVAVIYRQEK------------------------DAEDIFNQLYRES 481

Query: 580  EGK--TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
              K  TL +    +IETG            ++ RL+    +    E +  + ++G LE+R
Sbjct: 482  LFKSYTLINRLVNLIETGELSSLRTDTLKRLLNRLLTSANIPFHGEPAIGMQVMGVLETR 541

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRH 696
             L+F  LI+  LNEG  PK   ++ F+   ++    + T E      A+ F        +
Sbjct: 542  NLDFRNLIMLSLNEGQLPKAGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAEN 601

Query: 697  LIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
            +    +   +       SR++ + LV    D      + GQ        +   T +   +
Sbjct: 602  ITLLYNTASDGLNRGEMSRFMLQFLVESPHDISYEYLEAGQSPQQTRDIIIDKTPEILER 661

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
              + +         +S S +   ++     Y R +  L        + D    GT+FH  
Sbjct: 662  MHRIYNIHRHPRALFSPSALNAYLDCRLKFYYRYVAGLKAPEEVSAEIDSALFGTIFHYS 721

Query: 816  ITELIKKRINKNTPEINHLMKQII----------DSHFEKENLPP---------HIDIIW 856
               + K     N       ++ ++          D+ F+++                +I 
Sbjct: 722  AELVYKDLTAHNKEIRKEDLEALLKNDVKLQAYVDNAFKEKFFHVSQTEQPEYNGTQLIH 781

Query: 857  RHLFHKISHSFLEHEEKIQSS-IEKIFVNI----PAKMAIESIGIHLTGFADRIDLLKSG 911
              +        L+++ +     +E +   +      + +   + + + G  DR+D     
Sbjct: 782  AKVIASYLRQLLKNDLQYAPFCMEAMEKEVDEVMEVETSAGKLSLKIGGTIDRMDSKGD- 840

Query: 912  FVDITDYKTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLF 961
             + I DYKTG  PK  E  ++L  P         Q  L A+ L      ++      +L 
Sbjct: 841  TLRIVDYKTGGTPKIPENIEQLFTPANNRPNYIFQTFLYASILCRRQPLKVAP----SLL 896

Query: 962  YIRLKQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRL 1014
            YI          I                    E+  + L +++  + + + PF      
Sbjct: 897  YIHRAASESYSPIIEMGASRQPKVPVNNFAFHEEEFRERLQKLLQEIFSPDTPFD--QTE 954

Query: 1015 SEKSNIQSEYDHLA 1028
              K     ++  L 
Sbjct: 955  DTKLCEYCDFRSLC 968


>gi|224539621|ref|ZP_03680160.1| hypothetical protein BACCELL_04529 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224518772|gb|EEF87877.1| hypothetical protein BACCELL_04529 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 965

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 143/1092 (13%), Positives = 301/1092 (27%), Gaps = 208/1092 (19%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L      +           L+ V I  P KRA           +  +    P
Sbjct: 4    FLQLVAQDLYKKIGND-----------LSRVAIVFPNKRASLFFNEHLAAQSD-RPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD----IIKDLYP 132
               S+ ++  +     L     L            +  L  ++R +            + 
Sbjct: 52   AYVSISELFRQLSPWKLGDPIRL------------VCELYKVFREETHSEETLDDFYFWG 99

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL--------- 183
            E  +S        +  A  L   +  ++     ++ L + + E    ++           
Sbjct: 100  ELLISDFDDVDKNLVDADRLFSNLQDLKNIMDDYDFLDSEQEEAIRQFFQNFSIERRTQL 159

Query: 184  ------AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
                    D L      + + L EL  +        +M        K      +  G   
Sbjct: 160  KEKFISLWDKLGDIYHGYRDNLAELGIAYEGMMYRYVMEEL--QPEKLKYDRYVFVGFNV 217

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                  R    + +    A+     D                    +       P Y+  
Sbjct: 218  LNKVETRFFERLRDA-GRALFYWDYDLFY-----------------TRLPREKTPPYTHE 259

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                 L   +     L                                     ++ +   
Sbjct: 260  AGEFILRNLKIFPNELPGT--------------------------------AFDVLRHPK 287

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKS-------ALITADRNLARRVKLELTRFG 410
            +V  I A  E  +A  +   +   +  +   +       A++  + +L   V   +    
Sbjct: 288  NVRFISAPTENAQARYLPEWVHAVMKNDPSGTPTQEKENAVVLCNESLLLPVLHSIPSEV 347

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKY 463
             N++I+ G PL+ T   S +++L+               + A+  ++KHP  +   P   
Sbjct: 348  KNVNITMGFPLAQTPVYSFISALIELQTNGYRRDTGRYSYEAVQAVLKHPYTRQLSPSAE 407

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                   LE    + N+      +LK                           +     L
Sbjct: 408  ------KLEKQLTKDNRFYPLPSELKQ----------------DEFLEQVFTPQTGISAL 445

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
              ++   +  +      +  T                              L+ E   K+
Sbjct: 446  CQYLTDTLREVSILYRQEQET------------------------DDIFNQLYRESLFKS 481

Query: 584  LSSLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             + +   +       +         ++ RL+    +    E +  + ++G LE+R L+F 
Sbjct: 482  YTLINRLLSLIDSGELNLQTDTLKRLLCRLLATSNIPFHGEPAIGMQVMGVLETRNLDFR 541

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTR 701
             LI+  LNEG  PK   ++ F+   ++    + T E      A+ F        ++    
Sbjct: 542  NLIMLSLNEGQLPKAGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLLY 601

Query: 702  SLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
            +   +       SR++ + LV    D      + GQ            T +   +  + +
Sbjct: 602  NTSSDGLNRGEMSRFMLQFLVESPHDISREYLEAGQSPQSGREIRIEKTPEIIARMYEKY 661

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
              +      +S S +   ++     Y R +  L        + D    GT+FH       
Sbjct: 662  SLVRHPKALFSPSALNAYLDCRLKFYYRYVAGLKAPDEVSAEIDSALFGTIFHRSAELAY 721

Query: 821  KKRINKNTPEINHLMKQII----------DSHFEKENLPP---------HIDIIWRHLFH 861
            K             ++Q++          D+ F++E                +I   +  
Sbjct: 722  KDLTANGKEIRKEDLEQLLRNDVKLQNYVDTAFKEEFFHVLPTERPEYNGTQLINAKVIA 781

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPA----KMAIESIGIHLT--GFADRIDLLKSGFVDI 915
                  L ++ +  +      +  P     ++      + L   G  DR+D      + I
Sbjct: 782  SYLRQLLRNDLQ-YAPFTMEGMEEPVNEIMEIETPQGKLALNIGGTIDRMDSKGD-TLRI 839

Query: 916  TDYKTGDNP-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRL 965
             DYKTG +P   E  ++L  P         Q  L A+ +      ++      +L YI  
Sbjct: 840  VDYKTGGSPKTPENIEQLFTPADGRPNYIFQTFLYASIMCRKQSLKVAP----SLLYIHR 895

Query: 966  KQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018
                    +    +               ++  + L  ++  + N E+PF       ++ 
Sbjct: 896  AASETYSPVIEMGEARQPKIPVNNFAFYEDEFRERLQNLLQEIYNPEEPFT--QTEDKRK 953

Query: 1019 NIQSEYDHLARV 1030
                ++  L R 
Sbjct: 954  CEFCDFRDLCRR 965


>gi|23009340|ref|ZP_00050425.1| COG3893: Inactivated superfamily I helicase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 643

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 173/626 (27%), Positives = 270/626 (43%), Gaps = 16/626 (2%)

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
                 ++   ++  + +A++EA +EREEA+  A+ALR +L+  +  +AL+T DR LA R
Sbjct: 5   RLDAGERLALAREGMAGLAVVEAADEREEALIAALALRETLETPRATAALVTPDRGLALR 64

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           V  EL R+GI  + SAG+ L+ +        +     +      +  L+ HP  + G   
Sbjct: 65  VSAELARWGIAAEDSAGLSLARSQAGRFARLVAELAAE-VAPARVIALLAHPFVRLGLTR 123

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
             + RA  ALE+  LRG            ++      + +   VP  + RL   D +LA 
Sbjct: 124 SEVVRAAAALEIGGLRGPAPIPK-NSFGGMLAAVGLQRASTERVPRAKKRLKPIDWDLAE 182

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            ++  +   + P               ++     L     + +      ++ +   +   
Sbjct: 183 TILRRLKDALGPF-----QAEDLPVTGNLVALAALHREACERMMDGPEDEIDDPSLDSLD 237

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-KSSTLFILGTLESRLLN 640
                L +   E      ++   +    T L    TV          L ILG LE+RLL+
Sbjct: 238 GLFDDLEAAAREELPGRFSD---YAAFFTALARDRTVACAQRNAHPRLRILGPLEARLLS 294

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
            D ++LGGL+E VWP     + FL+R M+  + L   E+ IGQAAHDF  A GT   + T
Sbjct: 295 VDRIVLGGLDEAVWPVRQTTDAFLNRPMRGQVGLSPPERRIGQAAHDFVQALGTHDAVVT 354

Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH--YKRPK 758
           R+ +    PT+ SR+LQRL   GG   +     RGQ        LD   + P    KRP 
Sbjct: 355 RAAKREGSPTVPSRFLQRLRAFGGDAVWSEAVGRGQRLRRLAAALDRGREAPPPRLKRPA 414

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
           P P     P   S +EI+ L+ DPY+++A+ IL L+ +      P   +RG+L H I+ +
Sbjct: 415 PKPDPALFPERLSVTEIETLVRDPYSIFAKHILGLEALEPLAVVPGAAERGSLIHKILGD 474

Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKE-NLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
             +            L+  I    F    +  P +   W   + +++ +FLE E   + S
Sbjct: 475 FSQAHPGALPAAAETLLYAIALDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEASQRRS 534

Query: 878 IEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935
           I  I      K+ I        L+  ADRI+    G   I D+KTG  P   T      P
Sbjct: 535 IRAIHAERSGKLTIPLGERTFTLSARADRIEQRADGGFCIVDFKTGTPPSNRTVFAGFSP 594

Query: 936 QLSLEAAALKAGSFSQIDCRKVANLF 961
           QL+LEAA L  G+F  +  R    L 
Sbjct: 595 QLTLEAAMLMRGAFEGLKARTAPILL 620


>gi|224023771|ref|ZP_03642137.1| hypothetical protein BACCOPRO_00487 [Bacteroides coprophilus DSM
            18228]
 gi|224016993|gb|EEF75005.1| hypothetical protein BACCOPRO_00487 [Bacteroides coprophilus DSM
            18228]
          Length = 971

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 140/1066 (13%), Positives = 314/1066 (29%), Gaps = 168/1066 (15%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F +++   L   T  +            A + +  P KRA         +    +    P
Sbjct: 18   FLKQVAHDLYTKTNGD-----------FAHLAVVFPNKRASLFFNEYLAQEAD-RPIWSP 65

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               S+ ++  +  +  +     L   V ++ R+           +K        + E  +
Sbjct: 66   AYVSISELFRQSSSLQVGDPIKL---VCDLYRVFR-----EATGSKETLDDFYFWGEMLI 117

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYW 195
            S        +     L   +           DL+AL ++  +           +  S+++
Sbjct: 118  SDFDDADKNLADTDALFSNL----------RDLNALADDYDFLEEGQK-----EAISQFF 162

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                  ++  + +  +   +      +                     +++        G
Sbjct: 163  HNF--SIHQVTELKQRFISLWNVLREVYT----------------RYRQVLREQGIAYEG 204

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +    +D          +  ++                   +L   L+   + +     
Sbjct: 205  MLYREVIDR---------LDVRTLPYQRYVFVGFNVLNKVEQELFHRLNEAGKALFYWDY 255

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
             +  +        +               L     +      ++  IE+  E  +A  + 
Sbjct: 256  DNFYLEKTPHEAGEFIRRNL---RNFPSELPASAFSNLNRPKEITYIESPTENGQARYLP 312

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              +R +L E++K++A++  + ++ + V   L     +++I+ G PLS T   S + +L+ 
Sbjct: 313  QWIRTNLTEDEKETAVVLCNESMLQPVLHSLPENVSHLNITMGFPLSQTPAYSFVNALME 372

Query: 436  AIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
                          F  + ++++HP  +   PE         LE    + N+      +L
Sbjct: 373  LHTAGYNPNNGRYRFDEVISVLRHPYTRQLSPE------AGKLEKALTQDNRFYPLPSEL 426

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                                      E  E   LL                 + +    +
Sbjct: 427  --------------------------EKDEALELLFQ-------------PREGNLSLCI 447

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL-SSLFSKIIETGSCIKANAIEWID 607
             +++  K    C Q            L+ E              +     ++     +  
Sbjct: 448  MLAEALKRMAACYQQQAASADAAFDQLYREALFNAFTLINRFHTLTESGELQVQPATFKR 507

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            ++TR++   ++    E +  + ++G LE+R L+F  LI+  +NEG  PK+  +  F+   
Sbjct: 508  LLTRVMSAASIPFHGEPAIGMQVMGVLETRNLDFRHLIMLSVNEGQLPKSGGEASFIPYN 567

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725
            ++    + T +  I   A+ F         +    +   +       SR++ + L+    
Sbjct: 568  LRKAFGMTTIDHKIAVYAYYFYRLLQRAEKVTLVYNTSTDGINRGEMSRFMLQFLIEWEY 627

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                 + +  Q            T     +    F          S S +   ++ P   
Sbjct: 628  PVRRMVLEAAQSPQTTAPITIEKTPDVMRRMQSVFDVRVNPKAFLSPSALNCYLDCPLKF 687

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF-- 843
            Y + + +L        + D +  G++FH+    + K             ++ ++      
Sbjct: 688  YYKYVAQLSAPDEVSAEVDASHFGSIFHDAAEHIYKDLTAHGKVINKEAIETLLKDEVRL 747

Query: 844  -----------------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                             E+      I +I   +  +     LE++    +          
Sbjct: 748  QEYVDNGFKKLFFNIPKEERAEYNGIQLINSAVITRYLKQLLENDL-RYAPFTFSGSEHF 806

Query: 887  AKMAIE---SIGI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935
                I+     GI    + G  DR+D  K G + I DYKTG         + L  P    
Sbjct: 807  VSEDIDIRTPRGILKSRIGGIIDRLD-TKDGTLRIVDYKTGGDADTPANVESLFLPDKKR 865

Query: 936  -----QLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
                 Q  L A+ +      +    +VA +L YI          +    +     E  E 
Sbjct: 866  SAYVFQTFLYASIVCRKLREKGSDLRVAPSLLYIHRAASQDYSPVIRMGEPRKEKEAVED 925

Query: 990  -------SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                     +NL +++ ++ N E  F  +   +E      ++  L 
Sbjct: 926  FSQYENLFRENLNQLLEVIFNPEIAF--NQTDNEDKCSFCDFRGLC 969


>gi|118590598|ref|ZP_01548000.1| hypothetical protein SIAM614_03446 [Stappia aggregata IAM 12614]
 gi|118437061|gb|EAV43700.1| hypothetical protein SIAM614_03446 [Stappia aggregata IAM 12614]
          Length = 590

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 190/595 (31%), Positives = 303/595 (50%), Gaps = 18/595 (3%)

Query: 4   KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63
           +   ++++ PS PF + ++  L++GTL+  FR    +PLLL SVT+Y+PT+RA + L   
Sbjct: 3   RSARLWSVPPSVPFLKTLVDTLVDGTLIPGFRP-LDDPLLLPSVTLYLPTRRAARLLPEL 61

Query: 64  FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-LNPPVSNIQRLLELARLILIWRNK 122
           F +  G +  +LP I+ +GD  E+  +         L P +  ++R L + RL+  W+  
Sbjct: 62  FQQRFGGRPVLLPAIRPVGDADEDAQSLTASADLEPLPPAMPLLERHLAMTRLVKAWKGM 121

Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
           L      L  + PL LP S A+A WLA +L  ++D +ETEE  W +L  L  E +  +W 
Sbjct: 122 LRREALSLRSDEPLGLPASTADAAWLAADLLTLMDEVETEEADWSELSGLVPEDHARYWQ 181

Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIPA 241
           +  DFL+I  + W   L EL    P   + AL+R EAE L +   +GP+I+AG TGS+PA
Sbjct: 182 ITLDFLQIVREAWPAHLAELKMMDPKARRSALIRREAERLERTPPRGPVIVAGVTGSVPA 241

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT-------SSNTTYSTHPQY 294
           TA L+  V+    G +VLPGLD H+    W  + +++   +           T  +HPQY
Sbjct: 242 TAELLKVVSRLEAGVVVLPGLDRHLDNRSWAVLGQRTGKASMRKGVAPKDAATLPSHPQY 301

Query: 295 SLAKLLDFLDIKREDVKRL-GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
           SL +LLD L   RE+V  L       +  R  ++S++  P DTSD     +      +  
Sbjct: 302 SLKQLLDRLGAAREEVATLGPEPDQGLLLREELVSEALRPADTSDGWTAYLDTRSETDRA 361

Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
           +    V+++ A NE +EA+S+AIALR +++   + +ALI+ DR L RRV  EL R+ I +
Sbjct: 362 RALDGVSIMTARNEADEALSVAIALREAIERQ-ESAALISPDRMLTRRVAAELARWNIQV 420

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
           D SAG PL  T  + +            D + +  L+KHPL + G P K +  A  ALE 
Sbjct: 421 DDSAGRPLDQTAPAILAILAAKLALGGCDPIDLLALLKHPLTRLGLPVKDIRSAARALER 480

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
             +RG +       L+ L +D    + +  H P W+     ED ++   LVD +   + P
Sbjct: 481 GVVRGPRARPGTAGLR-LAVDASREEVSKAHTPRWKKIHD-EDWDVIANLVDRLANALKP 538

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
           L     +     G + ++D  +  V  ++ + +D    +  L+  E G+ L+   
Sbjct: 539 LEELAGD----GGTILLTDLARRHVEVIEAISIDHEGSVAELYAGEAGEALAQFL 589


>gi|189463366|ref|ZP_03012151.1| hypothetical protein BACCOP_04083 [Bacteroides coprocola DSM 17136]
 gi|189429795|gb|EDU98779.1| hypothetical protein BACCOP_04083 [Bacteroides coprocola DSM 17136]
          Length = 972

 Score =  290 bits (742), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 156/1066 (14%), Positives = 305/1066 (28%), Gaps = 168/1066 (15%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F +++   L N T                 V I  P KRA         + +  +    P
Sbjct: 19   FLKQVAHDLYNKTEGN-----------FTKVAIVFPNKRASLFFNEYLAQESD-RPIWSP 66

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               S+ ++  +     +     L   V ++ ++ +         +K        + E  +
Sbjct: 67   TYVSISELFRQSSDLSIADPIKL---VCDLYKVFQ-----KATGSKETLDDFYFWGEMLI 118

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
            +        +     L   +  +            + N  +           +  S+++ 
Sbjct: 119  ADFDDADKNMADTHALFSNLKDLNEL---------MDNYDFLEEGQK-----EALSQFFH 164

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
                 +N  + +  +   M      +    K  +     + SI     L   V       
Sbjct: 165  NF--SINQVTELKQRFISMWNVLGDIYTEYKALLE----SQSIAYEGMLYRQVIEQ---- 214

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                             +  ++                    L   L+   + +      
Sbjct: 215  -----------------LDVEALPYNKYIFVGFNVLNKVEHTLFKKLNEAGKAMFYWDYD 257

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
            +  +        +               L     +      +V  IE+  E  +   +  
Sbjct: 258  TFYLNKTPHEAGEFIRRNL---RDFPSELPASFFDNLNQPKEVTFIESPTENGQVRYLPQ 314

Query: 377  ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             +R +L   +K++A++  +  L + V   L     +I+I+ G PLS T   S + +L+  
Sbjct: 315  WIRENLTSQEKETAVVLCNEALLQPVLHALPDNVKHINITMGFPLSQTPAYSFVNALMEL 374

Query: 437  IFKLNDF-------MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
                 +          + +++KHP  +   PE         LE    R N+      +LK
Sbjct: 375  HTSGYNPNNGRYLFAEVISVLKHPYTRQLSPE------AEKLEQNLTRDNRFYPLPSELK 428

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
                                                     +  L T + N    C    
Sbjct: 429  Q-------------------------------------DNVLELLFTPRRNNLDLCSM-- 449

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT--LSSLFSKIIETGSCIKANAIEWID 607
            +S+  K      Q            L+ E   KT  L + F  +IE    +   A  +  
Sbjct: 450  LSEALKEVAVIYQQQAASHSDAFDQLYRESLFKTYTLVNRFHTLIE-SKELNVQAGTFQR 508

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            ++TR++   ++    E +  + ++G LE+R L+F  LI+  +NEG  PK    + F+   
Sbjct: 509  LLTRVMSSSSIPFHGEPAIGMQVMGVLETRNLDFRHLIMLSVNEGQLPKAGGDSSFIPYN 568

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725
            ++    + T +  I   A+ F         +    +   +       SR++ + L+  G 
Sbjct: 569  LRKAFGMTTIDHKIAVYAYYFYRLMQRAEKVTLVYNTATDGINRGELSRFMLQFLIEWGY 628

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                   +  Q   D T  +   T     +    F          S S +   ++ P   
Sbjct: 629  PVLRKQLEAAQSPQDSTPIIIEKTPDVMERMKSVFDIRNNPKALISPSALNCYLDCPLKF 688

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE- 844
            Y + +  L        D D    G++FH     + K             ++ ++      
Sbjct: 689  YYKYVALLSAPDEVTADIDSAKFGSIFHYAAEHIYKALTAHGKLISKENLETLLKDEVRL 748

Query: 845  ------------------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                              ++     I +I   +  K     L ++    +    +     
Sbjct: 749  QTYVDNGFKELFFNLPPNEQPEYNGIQLINSAVIVKYIQQLLRNDL-RYAPFTFVGSEQR 807

Query: 887  -AK-MAI----ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935
              + + I      I   + G  DRID  K   + I DYKTG         Q L  P    
Sbjct: 808  IFENIEICTSTGDIQSRIGGIIDRID-SKGESLRIVDYKTGGDADTPANVQSLFIPDKKR 866

Query: 936  -----QLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITNDKKKYSADELSE- 988
                 Q  L A+ +      + D R VA  L YI          +    +     E  E 
Sbjct: 867  SNYVFQTFLYASIVCKKLREKNDSRLVAPALLYIHRAASENYSPVIQMGEPRKPKEPVEN 926

Query: 989  ------KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                     +NL  ++  + N +  F       E      ++  L 
Sbjct: 927  FAQYEGDFRENLKTLLEDIFNPDISFT--QTEIEDKCAYCDFRALC 970


>gi|157803845|ref|YP_001492394.1| hypothetical protein A1E_03370 [Rickettsia canadensis str. McKiel]
 gi|157785108|gb|ABV73609.1| hypothetical protein A1E_03370 [Rickettsia canadensis str. McKiel]
          Length = 928

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 172/1035 (16%), Positives = 338/1035 (32%), Gaps = 145/1035 (14%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
            A +  F       +++                   V I +P   +  EL+   I+    K
Sbjct: 2    AANYSFLESFAKYIIDKLGKGK------------EVQIILPNNFSCLELKKILIDKYKIK 49

Query: 72   STILPIIKS-LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
               LP+I   +  + ++   AD          +S I+ L  L+ +I  ++    +I + L
Sbjct: 50   ---LPVIIPFISIISKKNLDADY---------ISKIEELFILSEIITEYKELTFNIEESL 97

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                              AK L  + + +         +  ++      +W     FL+ 
Sbjct: 98   KA----------------AKILRKLFNDLILNNID---IKLIEVYNNSSYWQKIYKFLEY 138

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                W E +  +  S     +               +          SI    +    V 
Sbjct: 139  CFLRWQEEISPIMNSDSFCDRCKERSLYTNRRDDEQRSTKW-----RSIQYNQKQTKAVY 193

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                    +  +       I   I +    +         +  +    L         D 
Sbjct: 194  KLKLLHEEIIKIKNGHKQIILAGIFKPDPFLKKFKEELKDYIIHYNPSL------SARDF 247

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                +   E    +   + ++          +        N  +  ++++ +E  +  EE
Sbjct: 248  LHNVDDKQEFVEDTERRTAAYTNVHEDSSTGSTHKLPLDKNYARSLNNISYLEPHDIYEE 307

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A  IA           K+ A+IT +  L R     L ++   +    G  L  T    +L
Sbjct: 308  AKQIAYI---CSRNKDKRIAIITDNNKLKRVYCNFLDKYEDLL----GHDLRLTNIGELL 360

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            TS++  +    D   +  L+K+PL                LEL+    N+       L  
Sbjct: 361  TSIIKILCNNFDLKTLFLLLKNPLINCPM--------VQKLELMLSNKNRFISSPKYLLQ 412

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            L                     +E+ +E    L+D +                T    +I
Sbjct: 413  L------------------QFDNEDIREYCRNLIDILF---------------TNTPYNI 439

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS-CIKANAIEWIDII 609
             D         + +        P +W +E G  L    + +          +  ++  I 
Sbjct: 440  QDILVAAKEIAEKIL-------PTIWGKEGGTELLEFLTNLTAYCKYINPTDKKDFPKIF 492

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL-SRVM 668
            + L+       K  +++ + I    +  L  FD +IL   N   W  N   +P+L ++  
Sbjct: 493  SFLLSNIRYY-KNTEAANIIIGSPTDLVLCEFDLIILPHFNNENWSPNKQVHPWLLNKKA 551

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
               LN+   E      +  F +    + +I   + + +   T  S    +L         
Sbjct: 552  LQILNIDYDEIDSNLYSDYFNLFLQNKQVIILNAKKYDKKLTTTSNLFLKLQ-------- 603

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
             +          ++  +D   K       +        P T S ++I+ LI +PY  YA+
Sbjct: 604  KDCVSSHDSIAGFSNYMDTVFK--PQYNNESTALNTFFPTTLSVTDIETLIRNPYGFYAK 661

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRINKNTPEINHLMKQIIDSHFE 844
            +IL L    +  ++P  +D G   HN++ E  K    + +N N  +  + +  I +    
Sbjct: 662  KILGLRKKDNIWEEPKISDFGNFIHNVLEEYSKNYDKQYMNLNLLDKQNALINIGNHILY 721

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA--IESIGIHLTGFA 902
               LP +    W+      S +F+  + + + + ++I+  I  ++   I    I + G A
Sbjct: 722  STILPIYTKKAWQIKLVAFSKAFILFDIERRKNCKEIYFEIKGELRLNIAGQDIKIIGIA 781

Query: 903  DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN--- 959
            DRI++ KS  + I DYKTG  P K+  +  + PQL +E+  L    F++    K  N   
Sbjct: 782  DRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESLMLLENGFTEFYSCKSGNPVI 841

Query: 960  -----LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014
                 + Y+++      D      +     +   +    LI+++      +  F   L L
Sbjct: 842  NKEITIAYVKITS---TDPYIQTTEIALNIKTLNRHKAGLIKLLEHYITNKF-FSYDLNL 897

Query: 1015 SEKSNIQSEYDHLAR 1029
            S+     ++Y HL+R
Sbjct: 898  SK----YNDYLHLSR 908


>gi|329955054|ref|ZP_08296035.1| hypothetical protein HMPREF9445_00875 [Bacteroides clarus YIT 12056]
 gi|328526344|gb|EGF53359.1| hypothetical protein HMPREF9445_00875 [Bacteroides clarus YIT 12056]
          Length = 963

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 143/1089 (13%), Positives = 302/1089 (27%), Gaps = 208/1089 (19%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L +    +           L+   I  P KRA           +  +    P
Sbjct: 4    FLQLVAQDLYSKIGND-----------LSRTAIVFPNKRAGLFFNEHLAAQSD-RPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK----LPDIIKDLYP 132
               ++ ++  +           L            +  L  ++R +     P      + 
Sbjct: 52   AYVNISELFRQLSPLKSGDPIRL------------VCELYKVFREETHSEEPLDDFYFWG 99

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL--------- 183
            E  +S        +  A  L   +  ++     ++ L   + E    ++           
Sbjct: 100  ELLISDFDDVDKNLVDAGKLFSNLQDLKNIMDSYDFLDKEQEEAIQQFFQNFSIDKRTQL 159

Query: 184  ------AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
                    D L    + + + L EL  +        ++        +      +  G   
Sbjct: 160  KEKFISLWDRLGDIYRNYRKNLSELGIAYEGMMYRHVIEQLDT--DRLRYDRYVFVGFNV 217

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                  R    + +    A+     D                    +   +   P Y   
Sbjct: 218  LNKVETRFFQLLQDAGK-AMFYWDYDVFY-----------------TRLPHEQQPPYIHE 259

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                 L   +    +L                                     ++ +   
Sbjct: 260  AGEFILRNLKLFPNQLPET--------------------------------AFDVLRHPK 287

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKS-----ALITADRNLARRVKLELTRFGIN 412
             V  I A  E  +A  +   +R  +  + + S     A++  + +L   V   +     N
Sbjct: 288  IVRFISAPTENAQARYLPEWVRTVMKNHTETSKEKENAIVLCNESLLLPVLHSIPPEVEN 347

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLS 465
            ++I+ G PL+ T   S + +L+               +  +  ++KHP  +       LS
Sbjct: 348  VNITMGFPLAQTPVYSYINALMELQTTGYRRDTGRYTYETVLAVLKHPYTR------QLS 401

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
             A   LE    + N+      +LK                           +     +  
Sbjct: 402  AASEDLEKQLTKDNRFYPLPSELKK----------------DAFLERIFTPQNGISSICR 445

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK--T 583
            ++ + +  +      +                         DE      L+ E   K  T
Sbjct: 446  YLTELLREVAVVYRQEK------------------------DEEDIFNQLYRESLFKSYT 481

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            L +    +IE    +         ++ RL+    +    E +  + ++G LE+R L+F  
Sbjct: 482  LVNRLLSLIE-SDGLSLQTDTLKRLMNRLLTSTNIPFHGEPAIGMQVMGVLETRNLDFRN 540

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRS 702
            LI+  LNEG  PK    + F+   ++    + T E      A+ F        ++     
Sbjct: 541  LIMLSLNEGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNSVYAYYFYRLIQRAENITLLYD 600

Query: 703  LRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
               +       SR++ + LV    D      + GQ          + T +   +    + 
Sbjct: 601  TASDGLNRGEMSRFMLQFLVESPHDISREYLEAGQSPQHSREIEIHKTDEVLSRMYNTYD 660

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                    +S S +   ++     Y R +  L        + D    GT+FH     + +
Sbjct: 661  IRRHPNALFSPSALNTYLDCRLKFYYRYVAGLKAPDEVSAEIDSALFGTIFHRSAELVYQ 720

Query: 822  KRINKNTPEINHLMKQII----------DSHFEKENLPP---------HIDIIWRHLFHK 862
                         ++Q++          D+ F++E                ++   +   
Sbjct: 721  DLTANGKEIRKEDLEQLLRNDVKLQTYVDTAFKEELFHVPADERPEYNGTQLVHSKVIAS 780

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAK------MAIESIGIHLTGFADRIDLLKSGFVDIT 916
                 L ++ +  +      +             + ++ +++ G  DR+D  K+  + I 
Sbjct: 781  YLRQLLRNDLQ-YAPFHMEAMEQKVTETIEVNTPLGTLPLNIGGTIDRMD-SKNDTLRIV 838

Query: 917  DYKTGDNP-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
            DYKTG  P   E  ++L  P         Q  L AA +      ++      +L YI   
Sbjct: 839  DYKTGGTPKTPENIEQLFTPADNRPSYIFQTFLYAAIMCRKQTLKVAP----SLLYIHRA 894

Query: 967  QKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
                   +                    +   + L  ++  + N  +PF        K  
Sbjct: 895  ASESYSPVIEMGAPRQPKVPVYNFAFYEDDFRERLSALLQEIYNSGEPFT--QTKDTKKC 952

Query: 1020 IQSEYDHLA 1028
               ++  L 
Sbjct: 953  EYCDFKRLC 961


>gi|270297068|ref|ZP_06203267.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273055|gb|EFA18918.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 963

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 144/1082 (13%), Positives = 307/1082 (28%), Gaps = 194/1082 (17%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L      +           L+   I  P KRA           T  +    P
Sbjct: 4    FLQLVARDLYAKIGND-----------LSRTAIVFPNKRASLFFNEYLATETD-RPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               S+ ++  +           L   V  + ++          R++        + E  +
Sbjct: 52   AYVSISELFRQLSPLKSGDPIRL---VCELYKVFR-----EETRSEETLDDFYFWGELLI 103

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL---------LAADF 187
            S        +  A  L   +  ++     ++ L   + E    ++          L A F
Sbjct: 104  SDFDDVDKNLVDADKLFSNLQELKNIMDNYDFLDQEQEEAIRQFFQNFSIEKRTELKAKF 163

Query: 188  ------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                  L    +++   L EL  +        +M        +      +  G       
Sbjct: 164  ISLWDKLGDIYRHYRRNLTELGIAYEGMMYRNVMEQLDT--DRLRYDRYVFVGFNVLNRV 221

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
              R    + +    A+     D                    +       P Y+      
Sbjct: 222  ETRFFQLLQDAGK-AMFYWDYDVFY-----------------TRLPLEQKPPYTHEAGEF 263

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L   +    +L   S                                 ++ +   +V  
Sbjct: 264  ILRNLKLFPNQLPETS--------------------------------FDVLRKPKNVRF 291

Query: 362  IEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLELTRFGINIDISA 417
            I A  E  +A  +   +R + +       K +A++  + +L   V   +     N++I+ 
Sbjct: 292  ISASTENAQARYLPQWIRGNEELRTPSSFKDTAVVLCNESLLLPVLHSIPAEVKNVNITM 351

Query: 418  GIPLSTTLHSSILTSLLNAIFKLND-------FMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            G PL+ T   S + +L+               +  + TL+KHP  +   P          
Sbjct: 352  GFPLAQTPVYSFINALVELQTTGYHAGTGRYIYETVITLLKHPYTRQLSPNAETL----- 406

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
             E    R N+      +LK                           +     L  ++ + 
Sbjct: 407  -EKQLTRDNRFYPLPSELKQ----------------DAFLEQVFTPQNGIAALCSYLTEL 449

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +  +      +                                      +  TL +    
Sbjct: 450  LREVAVLYRQEKDVEDIF----------------------NQLYRESLFKSYTLVNRLLS 487

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +IETG            ++ RL+    +    E +  + ++G LE+R L+F  LI+  LN
Sbjct: 488  LIETGELSGVRTDTLKRLLNRLLTSANIPFHGEPAIGMQVMGVLETRNLDFRNLIMLSLN 547

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-I 708
            EG  PK    + F+   ++    + T E      A+ F        ++    ++  +   
Sbjct: 548  EGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENVTLLYNISSDGLN 607

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                SR++ + LV    +      + GQ          + T +   +    +        
Sbjct: 608  RGEMSRFMLQFLVESPHNISLEYLEAGQSPQQALEIEIHKTPEMLQQMFDAYDIHRRPKA 667

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------K 821
             +S S +   ++     Y R +  L  +     + D    GT+FH     +        +
Sbjct: 668  FFSPSALNAYLDCRLKFYYRYVAGLKALDEVSAEIDSALFGTIFHRSAELVYNELTTNGR 727

Query: 822  KRINKNTPEINH---LMKQIIDSHFEKENLPP---------HIDIIWRHLFHKISHSFLE 869
            +   ++  ++      ++  +D+ F+++                +I   +        L 
Sbjct: 728  EIRKEDLEQLLKDDVRLQAYVDNAFKEKFFHVPLTEQPEYNGTQLIHSKVIASYLRQLLR 787

Query: 870  HEEKIQSSIEKIFVNIPAK--MAIES----IGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
            ++ +  +      +    +  M I++    + + + G  DR+D      + I DYKTG  
Sbjct: 788  NDLQ-YAPFRMEGMEQDVREMMEIDTPQGKLALQIGGTIDRLDSKGD-TLRIVDYKTGGT 845

Query: 924  P-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
            P   E  ++L  P         Q  L AA L      ++      +L YI          
Sbjct: 846  PKTPENIEQLFTPADNRPNYIFQTFLYAAILCRKQSLKVAP----SLLYIHRAASESYSP 901

Query: 974  ITN-------DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026
            +              +     ++  + L  ++  + + E+ F        +     ++  
Sbjct: 902  VIEMGAPRQPKVPVNNFAFFEDEFRERLHGLLQEIFSQEETF--SQTEDTRKCEYCDFRS 959

Query: 1027 LA 1028
            L 
Sbjct: 960  LC 961


>gi|325298045|ref|YP_004257962.1| hypothetical protein Bacsa_0897 [Bacteroides salanitronis DSM 18170]
 gi|324317598|gb|ADY35489.1| hypothetical protein Bacsa_0897 [Bacteroides salanitronis DSM 18170]
          Length = 957

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 143/1066 (13%), Positives = 309/1066 (28%), Gaps = 163/1066 (15%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F +E+   L   T  +            + V +  P KRA        I  +       P
Sbjct: 4    FLQEVAHDLYQKTEGD-----------FSHVAVVFPNKRASLFFNECLIRESEH-PLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               S+ ++  +  +        L            +  L  ++R                
Sbjct: 52   AYISISELFRQSSSWQTGDPVKL------------VCDLYKVFRQVTGSSEP-------- 91

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                   N  +  + L    D  +      + L +                L   +  + 
Sbjct: 92   -----LDNFYFWGEMLIADFDDADKNLADTDALFS------------NLKELNALTDNYD 134

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
                    +    ++   M +  E   +      I             L+ +      G 
Sbjct: 135  FLEEGQKEALAQFFRNFSMDSVTELKQRFIS---IWDTLGDIYTRYKALLESQGIAYEGM 191

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                     +   +  T+        +               L   L+   + +      
Sbjct: 192  ---------MYRRVIETLDVSQLPYKTYVFVGFNVLNKVEHTLFQKLNDAGKALFYWDYD 242

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
               +        +                  +     +   ++   E+  E  +   +  
Sbjct: 243  MFYLKRTPHEAGEFIRRNLHDFPSELPAARFE---NLEQPKEITFAESPTENGQTRFLPQ 299

Query: 377  ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             LR +L + +K++A++  + +L + V   L     +I+I+ G PLS T   S   +LL  
Sbjct: 300  WLRKNLTQEEKETAIVLCNESLLQPVLHSLPENVKHINITMGFPLSQTPAYSFANALLEL 359

Query: 437  IFKLNDFM-------AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
                 D            +L+KH   +       +       E    + N+      +L 
Sbjct: 360  HTSGYDSRNGRYHFKETVSLLKHAYTRLLSSNAEML------EKELTKNNRFYPLPSEL- 412

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
                     +K+      ++   + E       L + + + +  +   +  +  T    +
Sbjct: 413  ---------EKDEALELLFKPCHTNE------ALCNTLSKALQQIA-MRYQEQKTDEKDA 456

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
                 +                        +  TL++ F  ++E    +      +  ++
Sbjct: 457  FDQLYR--------------------EALFKAFTLTNRFHTLLE-SKELDVKPDTFQRLL 495

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
            TR++   ++    E +  L ++G LE+R L+F  LI+  +NEG  PK  +   F+   ++
Sbjct: 496  TRVMASSSIPFHGEPAIGLQVMGVLETRNLDFRHLIMLSVNEGQLPKTGSDASFIPYNLR 555

Query: 670  SDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
                + T +  I   A+ F           +   +  +       SR++ + L+  G   
Sbjct: 556  KAFGMTTIDHKIAVYAYYFYRLLQRTEKATLVFNTATDGINRGEMSRFMLQYLIEWGYPI 615

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                 +  Q   +              +  + F          S S +   ++ P   Y 
Sbjct: 616  RRIRLETAQSPQNTAPICIEKDSDVLLRLRQSFDLKYNPKAVLSPSALNTYLDCPLKFYY 675

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----------TPEINHLMKQ 837
            + + +L+       + D    G++FH     + K                  +    ++ 
Sbjct: 676  KYVARLNTPDEVSPEIDAAKFGSIFHYAAEHIYKDLTAHGKVINKETLEKLLKDETRLQT 735

Query: 838  IIDSHFEKENLPP---------HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
             +D+ F++               I +I   +  +     L  + K  +    I    P +
Sbjct: 736  YVDNGFKELFFHLSPEEKPEYNGIQLINSAVILRYIKQLLNKDIK-YAPFTFIGSEQPVQ 794

Query: 889  MAIES---IGI---HLTGFADRIDLLKSGFVDITDYKTG----DNPKKETAQKLIDP--- 935
              IE     G+    + G  DRID +K     I DYKTG      P  ++          
Sbjct: 795  EDIEIHSTTGVFQSRIGGTIDRID-MKDNIFRIVDYKTGGHADTPPSIQSLFTPSAKRSN 853

Query: 936  ---QLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITNDKKKYSADELSE--- 988
               Q  L AA +      + D R+VA +L YI          +    +    + + +   
Sbjct: 854  YVFQTFLYAAIVCRMLQQKHDERQVAPSLLYIHQAASEDYTPVIRMGEPRKTEPVEDFAR 913

Query: 989  ---KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031
               +  +NL +++T + + E PF +            ++  L +  
Sbjct: 914  YESEFRENLDQLLTHIFSPEIPF-AQTD-ETDVCAFCDFKELCKRK 957


>gi|281420136|ref|ZP_06251135.1| putative DnaD and phage-associated domain protein [Prevotella copri
            DSM 18205]
 gi|281405936|gb|EFB36616.1| putative DnaD and phage-associated domain protein [Prevotella copri
            DSM 18205]
          Length = 995

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 142/1108 (12%), Positives = 299/1108 (26%), Gaps = 212/1108 (19%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
             F + +   +L                 L+ + +  P KRA   L      +T       
Sbjct: 3    AFLKYVARDILEKYGNN-----------LSDIAVVFPNKRAALFLNESLARLTDH-PIWS 50

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
            P   ++ D+  +  T  +     L            +  L   +           +    
Sbjct: 51   PSYITISDLFRKHSTLKVGDPIKL------------VCDLHKTFVACTGIDETLDHFYGW 98

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
              L I+         ++   +   E       ++H L +  Y               K++
Sbjct: 99   GQLLITDF------DDIDKNMAEAEKLFANLSNIHELDDISYLTEEQKTL-----IKKFF 147

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
            +    +        +   L +   +                         +        G
Sbjct: 148  SNFNDD--------HNSELKKRFLQLWSH----------FLDIYKQFNMRLEEQGLAYEG 189

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            A+    ++                             Q    KL D L  + +       
Sbjct: 190  ALYRKVVND----------ENIKFQHKKYLFVGFNMMQVVERKLCDRLMKEGKAHFYWDY 239

Query: 316  VSNE---MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                    +     I +                  +I +      D+  I A  E  +A 
Sbjct: 240  DDYYMQNNHEAGHYIREYLKYYPNELNDMPPHDFREIYHNFDNNKDITYISASTENIQAR 299

Query: 373  SIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGI-------------NIDISAG 418
             +   L+        KK A++ AD  L + V   L                    +I+ G
Sbjct: 300  YVNQWLKEKKRYKYGKKVAIVLADEGLLQSVIHSLPTNEDIKSLPDYSENDKLAYNITLG 359

Query: 419  IPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNA 470
             PL  T   S+L  L+                  +   ++HP  ++       L  A + 
Sbjct: 360  YPLQQTPFYSLLQQLIKLQGVGHPKHSNNYRLHNVLMALRHPYTRYISQNYSKLLSALDE 419

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
             +         S D  +  SL+   +                        + L+ ++L  
Sbjct: 420  QKQFYPTRPFLSMDGDEGLSLLFKDLGETATENEYN--------------LRLIQYLLDI 465

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +  +      ++      S+     L     + +                          
Sbjct: 466  LKTIGVNSKEQDDPLFQESLFRTYTLLNRLQELI-------------------------- 499

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
                   +  + I    +I +LI   ++    E +  + ++G LE+R L+F+ +++   N
Sbjct: 500  ---QTGDLAVDCITLERLIQQLIQSTSIPFHGEPAEGIQVMGVLETRNLDFEHILVLSCN 556

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIP 709
            EG  PK      F+   ++    L T +  +   A+ F       H +    +    +  
Sbjct: 557  EGKLPKGVNDASFIPYSLRKAYGLTTIDNKVAIYAYYFHSLLQRSHDITLCYNNATEDGQ 616

Query: 710  T-IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
            +   SR++ +LLV    D        GQ  L  T            ++           +
Sbjct: 617  SGEMSRFMLQLLVESHHDIERFSLVAGQNTLRPT--------YEPIEKKLHTLSQLKNLK 668

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHNIITELIKKRINKN 827
              + + +   +      Y + +  L       +D  D    G +FH           + +
Sbjct: 669  MLTPTFLNTYLRCEKQFYYKYVEGLIEPDEMDEDEVDNKVFGNIFHRAAELFYLGLASSD 728

Query: 828  T-------------------PEINHLMK------QIIDSHFEKENL----------PPHI 852
                                 ++   +K      +++D  F +E               +
Sbjct: 729  ALTTDGKGELKLTRPIVVSKEQLEQALKDESLVYRLVDQAFREELFKVSAAGYRPKYNGL 788

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN------IPAKMAIESIGIHLTGFADRID 906
             +I + +  +     +  +   Q+    + +       +  + +I ++ + + GF DR+D
Sbjct: 789  QLINKEVIARYIRQLVTIDM-RQAPFTILGLELVVKTDVEVETSIGNLSLSIGGFIDRLD 847

Query: 907  L-----LKSG-----FVDITDYKTGDNPK--KETAQKLIDP-----------QLSLEAAA 943
                    +G      + + DYKTG           ++ DP           Q  L +  
Sbjct: 848  AVAANGHANGNNLAERIRVIDYKTGRISTTRPRELSEVFDPSMLNKHTDYYLQSMLYSII 907

Query: 944  LKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITNDKKKY--SADELSEKSLKNLIEIVTL 1000
            ++           V+  L +I+       D      K+   S D   E+ +K L  ++  
Sbjct: 908  VRHNRNLNPAQEPVSPGLLFIQNAGAEDYDPTLKMGKELISSIDVYEEEFMKQLKILIAN 967

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            + + EQPF       +       Y  L 
Sbjct: 968  IFDKEQPF--RPTDDKHRCEYCPYAALC 993


>gi|317478933|ref|ZP_07938080.1| hypothetical protein HMPREF1007_01196 [Bacteroides sp. 4_1_36]
 gi|316904910|gb|EFV26717.1| hypothetical protein HMPREF1007_01196 [Bacteroides sp. 4_1_36]
          Length = 963

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 143/1082 (13%), Positives = 305/1082 (28%), Gaps = 194/1082 (17%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L      +           L+   I  P KRA           T  +    P
Sbjct: 4    FLQLVARDLYAKIGND-----------LSRTAIVFPNKRASLFFNEYLATETD-RPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               S+ ++  +           L   V  + ++          R++        + E  +
Sbjct: 52   AYVSISELFRQLSPLKSGDPIRL---VCELYKVFR-----EETRSEETLDDFYFWGELLI 103

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL---------LAADF 187
            S        +  A  L   +  ++     ++ L   + E    ++          L A F
Sbjct: 104  SDFDDVDKNLVDADKLFSNLQELKNIMDNYDFLDQEQEEAIRQFFQNFSIEKRTELKAKF 163

Query: 188  ------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                  L    +++   L EL  +        +M        +      +  G       
Sbjct: 164  ISLWDKLGDIYRHYRRNLTELGIAYEGMMYRNVMEQLDT--DRLRYDRYVFVGFNVLNRV 221

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
              R    + +    A+     D                    +       P Y+      
Sbjct: 222  ETRFFQLLQDAGK-AMFYWDYDVFY-----------------TRLPLEQKPPYTHEAGEF 263

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L   +    +L   S                                 ++ +   +V  
Sbjct: 264  ILRNLKLFPNQLPETS--------------------------------FDVLRKPKNVRF 291

Query: 362  IEADNEREEAISIAIALR--MSLDEN--KKKSALITADRNLARRVKLELTRFGINIDISA 417
            I A  E  +A  +   +R    L      K +A++  + +L   V   +     N++I+ 
Sbjct: 292  ISASTENAQARYLPQWIRGNEKLRTPSSFKDTAVVLCNESLLLPVLHSIPADVKNVNITM 351

Query: 418  GIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            G PL+ T   S + +L+               +  + TL+KHP  +       +   +  
Sbjct: 352  GFPLAQTPVYSFINALVELQTTGYHTGTGRYTYETVLTLLKHPYTRQLSSHAEVLERR-- 409

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                  + N+      +LK                           +     L  ++ + 
Sbjct: 410  ----LTQDNRFYPLPSELKQ----------------DAFLEQVFTPQNGIAALCSYLTEL 449

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +  +      +                                      +  TL +    
Sbjct: 450  LREVAVLYRQEKDVEDIF----------------------NQLYRESLFKSYTLVNRLLS 487

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +IETG            ++ RL+    +    E +  + ++G LE+R L+F  LI+  LN
Sbjct: 488  LIETGELSGVRTDTLKRLLNRLLTSANIPFHGEPAIGMQVMGVLETRNLDFRNLIMLSLN 547

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-I 708
            EG  PK    + F+   ++    + T E      A+ F        ++    +   +   
Sbjct: 548  EGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENVTLLYNTSSDGLN 607

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                SR++ + LV    +      + GQ          + T +   +    +   +    
Sbjct: 608  RGEMSRFMLQFLVESPHNISLEYLEAGQSPQQAREIEIHKTPEMLQQMFDAYNIHQRPKA 667

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------K 821
             +S S +   ++     Y R +  L        + D T  GT+FH     +        +
Sbjct: 668  FFSPSALNAYLDCRLKFYYRYVAGLKAPDEVSAEIDSTLFGTIFHRSAELVYNELTANGR 727

Query: 822  KRINKNTPEINH---LMKQIIDSHFEKENLPP---------HIDIIWRHLFHKISHSFLE 869
            +    +  ++      ++  +D+ F+++                +I   +        L 
Sbjct: 728  EIRKDDLEQLLKDDVRLQAYVDNAFKEKFFHVPLTEQPEYNGTQLIHSKVIASYLRQLLR 787

Query: 870  HEEKIQSSIEKIFVNIPAK--MAIES----IGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
            ++ +  +      +    +  M I++    + + + G  DR+D      + I DYKTG  
Sbjct: 788  NDLQ-YAPFRMEGMEQDVREMMEIDTPQGKLALQIGGTIDRLDSKGD-TLRIVDYKTGGT 845

Query: 924  P-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
            P   E  ++L  P         Q  L AA L      ++      +L YI          
Sbjct: 846  PKTPENIEQLFTPADNRPNYIFQTFLYAAILCRKQSLKVAP----SLLYIHRAASESYSP 901

Query: 974  ITN-------DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026
            +              +     ++  + L  ++  + + E+ F        +     ++  
Sbjct: 902  VIEMGAPRQPKVPVNNFAFFEDEFRERLHGLLQEIFSQEETF--SQTEDTRKCEYCDFRS 959

Query: 1027 LA 1028
            L 
Sbjct: 960  LC 961


>gi|189466028|ref|ZP_03014813.1| hypothetical protein BACINT_02392 [Bacteroides intestinalis DSM
            17393]
 gi|189434292|gb|EDV03277.1| hypothetical protein BACINT_02392 [Bacteroides intestinalis DSM
            17393]
          Length = 965

 Score =  287 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 147/1086 (13%), Positives = 301/1086 (27%), Gaps = 196/1086 (18%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L            P     L+ V I  P KRA           +  +    P
Sbjct: 4    FLQLVAQDLY-----------PKIGNDLSRVAIVFPNKRASLFFNEYLAMQSD-RPIWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               S+ ++  +           L   V  + ++          R++        + E  +
Sbjct: 52   AYVSISELFRQLSPWKSGDPIRL---VCELYKVFR-----EETRSEETLDDFYFWGELLI 103

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL------------- 183
            S        +  A  L   +  ++     ++ L + + E    ++               
Sbjct: 104  SDFDDVDKNLVDADRLFSNLQDLKNIMDDYDFLDSEQEEAIRQFFQNFSIERRTQLKEKF 163

Query: 184  --AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                D L     ++   L EL  +        +M        K      +  G       
Sbjct: 164  ISLWDKLGDIYHHYRRNLEELGIAYEGMMYRYVMEEL--QPDKLKYEHYVFVGFNVLNKV 221

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
              +    +      A+     D                    +       P Y+      
Sbjct: 222  ETKFFERLREAGK-ALFYWDYDVFY-----------------TRLPRENTPPYTHEAGEF 263

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L   +     L                                   + +  +   +V  
Sbjct: 264  ILRNLKIFPNELPEA--------------------------------VFDTLRKPKNVRF 291

Query: 362  IEADNEREEAISIAIALRMSLDEN-------KKKSALITADRNLARRVKLELTRFGINID 414
            I A  E  +A  +   +R     +       +K++A++  +  L   V   +     N++
Sbjct: 292  ISAPTENAQARYLPEWIRSVTKRDLPETPVKEKENAVVLCNEALLLPVLHSIPHEVKNVN 351

Query: 415  ISAGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
            I+ G PL+ T   S +++L+               + A+ +++KHP  +           
Sbjct: 352  ITMGFPLAQTPVYSFVSALIELQTTGYRRDTGRYQYEAVQSVLKHPYTRQLSTSAE---- 407

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
              +LE    R N+      +LK  V                              L  ++
Sbjct: 408  --SLEKQLTRDNRFFPLPSELKQDVFLEQMFTPKT----------------GISALCQYL 449

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
               +  +      +  T                      D+           +  TL + 
Sbjct: 450  TDMLREVAVLYRQEQET----------------------DDIFNQLYRESLFKSYTLINR 487

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
               +I+    +         ++ RL+    +    E +  + ++G LE+R L+F  LI+ 
Sbjct: 488  LLNLIDN-GELNIQIDTLRRLLCRLLATSNIPFHGEPAIGMQVMGVLETRNLDFRNLIML 546

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLREN 706
             LNEG  PK    + F+   ++    + T E      A+ F        ++    +    
Sbjct: 547  SLNEGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENVTLLYNTASE 606

Query: 707  N-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                   SR++ + LV           + GQ            T +   +  + +     
Sbjct: 607  GLNRGEMSRFMLQFLVESPHTISREYLEAGQSPQSGREIRVEKTPEIITRMHERYDVNRH 666

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
                +S S +   ++     Y R +  L        + D    GT+FH     + K    
Sbjct: 667  PRSLFSPSALNTYLDCRLKFYYRYVAGLKAPDEVSAEIDSALFGTIFHRAAELVYKDLTA 726

Query: 826  KNTPEINHLMKQIIDS----------HFEKENLPPHI---------DIIWRHLFHKISHS 866
                     + Q++ +           F++E     +          +I   +       
Sbjct: 727  NGKEIRKEDLDQVLRNDIKLQNYVDIAFKEEFFHVALTEKPEYNGTQLINAKVITSYLRQ 786

Query: 867  FLEHEEKIQSSI----EKIFVN-IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
             L ++ +         EK     I  + +   + +++ G  DRID  K   + I DYKTG
Sbjct: 787  LLRNDLQYAPFFMEGMEKKVTEIIEIETSQGKLALNIGGTIDRID-SKDDTLRIVDYKTG 845

Query: 922  DNP-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
             +P   E  ++L  P         Q  L A+ +      ++      +L YI        
Sbjct: 846  GSPKTPENIKQLFTPADGRPNYIFQTFLYASIMCRKQSLKVAP----SLLYIHRAASETY 901

Query: 972  DCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
              +    +               ++  + L  ++  + N E+ F        K     ++
Sbjct: 902  SPVIEMGEARQPKIPVNNFAFYEDEFRERLQTLLQEIYNPEEAFT--QTEDTKKCEFCDF 959

Query: 1025 DHLARV 1030
              L R 
Sbjct: 960  RELCRR 965


>gi|255009002|ref|ZP_05281128.1| hypothetical protein Bfra3_07667 [Bacteroides fragilis 3_1_12]
 gi|313146742|ref|ZP_07808935.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135509|gb|EFR52869.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 957

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 139/1087 (12%), Positives = 306/1087 (28%), Gaps = 210/1087 (19%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L +    +           L+   I  P KRA           +  +    P
Sbjct: 4    FLQLVAQDLYSKIGND-----------LSRTAIVFPNKRASLFFNEHLANQSD-QPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK----LPDIIKDLYP 132
               S+ ++ ++     L     L            +  L  ++R +            + 
Sbjct: 52   AYVSISELFQQLSVLKLGDPIRL------------VCELYKVFREETKSEESLDDFYFWG 99

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF----- 187
            E  +S        +  A  L   +  ++      +D + L  E+         +F     
Sbjct: 100  ELLISDFDDVDKNMVDADKLFTNLQDLKNV---MDDYNFLDEEQEQAIQQFFLNFSIEKR 156

Query: 188  -------------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234
                         L    + +   L E   +        ++               +  G
Sbjct: 157  TLLKEKFISLWDKLGNIYRQYRRNLEESGLAYEGMLYRNVIEHLEP--ESLKYDRYVFVG 214

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
                          + +    A+     D                               
Sbjct: 215  FNVLNKVETHFFRQLQSTGK-ALFYWDYDV------------------------------ 243

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
                    L  + +     G        R++ +  + LP              ++ +  +
Sbjct: 244  ----FYTQLPSQHKQRHEAGE----FINRNLKLFPNELPA-------------ELFDELR 282

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
                V  I +  E  +A  +   +R +L   +K++A++  +  L   V   +     N++
Sbjct: 283  KPKKVRFISSPTENAQARYLPEWIRENLSSEEKENAVVLCNEALLLPVLHSIPEEVRNVN 342

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSRA 467
            I+ G PL+ T   S + ++L               + A+ T++KHP  +         + 
Sbjct: 343  ITMGFPLAQTPVYSFINAILELQTSGYRTESGRYTYEAVQTILKHPYTRRLSDNAEPLQR 402

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
                     + N+      +LK                   + R  +        + +  
Sbjct: 403  ------ELTKTNRFYPFPSELK-------------------KDRFLDLLFTPRNGIRELC 437

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            +     L            N                   D+           +  TL++ 
Sbjct: 438  IYITELLKEVSILYRHEQEN-------------------DDIFNQLYRESLFKSFTLANR 478

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
               +I+    ++        ++ ++++   +    E +  + I+G LE+R L+F  L+L 
Sbjct: 479  LLNLIDN-GELQVRIDTLKRLLNKILNAANIPFHGEPAIGMQIMGVLETRNLDFRNLLLL 537

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLREN 706
             LNEG  PK+  ++ F+   ++    + T E      A+ F        ++    +   +
Sbjct: 538  SLNEGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLMYNTSSD 597

Query: 707  N-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKPFPPL 763
                   SR++ + L+    +      + GQ   +    R            +   F   
Sbjct: 598  GLNRGEWSRFMLQFLIEWSHEISREYLEAGQSPQNSRDIRITKTPEIIDRLYQTYDFSHN 657

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                   S S +   ++     Y R + +L        + D    GT+FH          
Sbjct: 658  ADALM-LSPSALNTYLDCRLKFYFRYVARLKAPDEVSAEIDSALFGTIFHRSAQLAYLDL 716

Query: 824  INKNTPEINHLMKQIIDS----------HFEKENLPP---------HIDIIWRHLFHKIS 864
                       +++++             F++E              + +I   +     
Sbjct: 717  TAHKQEIHKEDIERLLRDNVRLQNYVDTAFKEEFFHVPLDEKPEYNGVQLINSKVITSYL 776

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------IHLTGFADRIDLLKSGFVDITDY 918
               L ++ +  +    I +       I+  G      + + G  DR+D  K G + I DY
Sbjct: 777  RQLLRNDLQ-YAPFRMIGMEQKVTEDIQIEGPKGMLSLKIGGTIDRMD-SKEGTLRIVDY 834

Query: 919  KTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
            KTG +PK     ++L  P         Q  L AA +      ++      +L YI     
Sbjct: 835  KTGGSPKVPANVEQLFTPAEGRPNYIFQTFLYAAIMARQQTLKVAP----SLLYIHRAAS 890

Query: 969  FKIDCITNDKKKYSADELSE-------KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
                 +    +        +       +  + L+ ++  + N ++ F     L  K    
Sbjct: 891  ESYSPVIEMGEARKPKLPVDDFSVYEKEFRERLLALLEEIYNDQEEFTQTEDL--KKCEY 948

Query: 1022 SEYDHLA 1028
             ++  + 
Sbjct: 949  CDFKAMC 955


>gi|242280177|ref|YP_002992306.1| hypothetical protein Desal_2713 [Desulfovibrio salexigens DSM 2638]
 gi|242123071|gb|ACS80767.1| conserved hypothetical protein [Desulfovibrio salexigens DSM 2638]
          Length = 967

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 143/1042 (13%), Positives = 304/1042 (29%), Gaps = 166/1042 (15%)

Query: 11  IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG- 69
           I+    F   +   ++N +  +           L+ VT+ VP  R  + L+         
Sbjct: 9   ISWKEDFIENLATTIINDSDGD-----------LSKVTVIVPHHRPARYLKKALAASEQL 57

Query: 70  KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129
            K  ILP I S  D      +    L+      +  + ++  L  +I   RN+   ++  
Sbjct: 58  PKPCILPEIYSFSDF---VSSLIPKLTAEFPRKIGKLDQVGLLFNIIEKLRNESTGMLAK 114

Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
           +        P            LA +++ +  ++ K  +L  L   +   W     + L+
Sbjct: 115 M--------PTDLQLFFPWGTRLASLLEDLLRQDIKPRNLTML-QGEVLEWAAALLEELE 165

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
           I    + E L +   ++       L+              + +AG  G            
Sbjct: 166 IIFVRYMEELEKRGWTTSGLENRTLVENFNGLDDILKDRQLYLAGFYGVSGVEDMF---- 221

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                                                            L D L ++   
Sbjct: 222 ----------------------------------------------FRYLWDNLGLQ--- 232

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                +      GR                   + + +   N      ++   E  +   
Sbjct: 233 -VIWHSDPGLAAGRKGHF-AVREHRLWLQNWKAEAVSDHSANGSCQLPELKFFEGFDRHS 290

Query: 370 EAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
           +  +    +R  L  +  +  A++  D +L   V   L     +I+IS G PL  +  + 
Sbjct: 291 QLSA----MREELCSQKVEGCAVVLPDTSLLLPVMHHLPE--QDINISMGYPLERSALNG 344

Query: 429 ILTSLLNAIFKL----NDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
           ++ ++L            +  I  L++HP  K          R        ALR      
Sbjct: 345 LVEAVLKLQENRNGRTFYWKDILALIRHPYLKMLEVNGDQPLRTIFHQWENALRHGAPYA 404

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
           D+ D   +  D      +N                      + +  CI      +T    
Sbjct: 405 DVTDFVPVYSDDNGNLVDNPETTEELRS-------------EAVQICIDGFKDIETLSEL 451

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                ++S+  +     L             L  E   + ++ +  ++ E+    +    
Sbjct: 452 ADSLQAMSEMLRQRGGTLW--------NRYLLDSECLFRLMNEVIPELRESSISNEIFGQ 503

Query: 604 EWI-DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
                I  +L+  + V  + +  S + +LG LESRLLNF    +    +   P     +P
Sbjct: 504 SLCFSIFRQLLSSQRVSFEPDPISGMQVLGMLESRLLNFKRTFILDTVDEKLPGTDPYDP 563

Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMA-NGTRHLIYTRSLREN----NIPTIASRWLQ 717
            L   ++  L+L  + +    A ++F     G+                +  +I SR+++
Sbjct: 564 LLPDQLRHLLDLPDSRERESVATYNFYRLIMGSEESCIFYQSGVQPGLLDSKSIRSRFVE 623

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-----RKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
           +LL          +   G+ +           +         +  +       + +  S 
Sbjct: 624 QLLWEIEQQR-KEIITPGEEFPLKAVNFPVGAIVNNPAAIPKEPLQDKLENLLKFKGLSP 682

Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK---NTP 829
           S I   +  P   + R +  +       +D DR   G L H+++ + ++  +NK      
Sbjct: 683 SAIDCYVGCPKLFFFRYLSNVRESVTVDQDGDRAGFGDLIHSVLKDFLEPHLNKEICGKD 742

Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--A 887
                ++ +     E+++L P++    +    +   + L    K     + + +     A
Sbjct: 743 LDAQALQDLFMLRLERDSLYPNLAYDIKKSLEQAGKNRLALFLKSLKPTKIVELESDSQA 802

Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD----NPKKETAQ------------- 930
           ++ ++   + + G  DR+D    G   + DYKTG            +             
Sbjct: 803 ELEMDDFSVRIHGRVDRVDERA-GERYVLDYKTGRLHLPRKSFWEDENIWGPLLDDPQAI 861

Query: 931 -------------KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL-KQKFKIDCITN 976
                             QL L                       + L     ++    +
Sbjct: 862 YHDGTPFLEMIKNSADSLQLPLYLLM-----DHHTSGELPRQAALVELVTDGREMGLFDS 916

Query: 977 DKKKYSADELSEKSLKNLIEIV 998
                  +E+ E  +  L +++
Sbjct: 917 KTGDEEREEIIETKIPALTKVI 938


>gi|60681670|ref|YP_211814.1| hypothetical protein BF2191 [Bacteroides fragilis NCTC 9343]
 gi|60493104|emb|CAH07885.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 957

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 137/1083 (12%), Positives = 311/1083 (28%), Gaps = 202/1083 (18%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L      +           L+   I  P KRA           +  +    P
Sbjct: 4    FLQLVAQDLYCKIGND-----------LSRTAIIFPNKRASLFFNEHLANQSD-QPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII----KDLYP 132
               S+ ++ +      L     L            +  L  I+R +            + 
Sbjct: 52   AYLSISELFQHLSVLKLGDPIRL------------VCELYKIFREETNSDESLDDFYFWG 99

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAA- 185
            E  +S        +  A  L   +  ++     +E L   + +    ++           
Sbjct: 100  ELLISDFDDVDKNLVHADKLFTNLQDLKNVMDDYEFLDQEQEQAIQQFFQNFSIEKRTLL 159

Query: 186  --DF------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
               F      L    + + ++L EL  +        ++               +  G   
Sbjct: 160  KEKFISLWDKLGDIYRRYHKKLEELGFAYEGMLYRNVIEQLEP--DSLKYDCYVFVGFNV 217

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                       + N    A+     D                                  
Sbjct: 218  LNKVETHFFQQLQNAGK-ALFYWDYDVFY------------------------------- 245

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                                 ++  R     ++    + +     + L  ++ N      
Sbjct: 246  --------------------TQLPSRQKQRHEAGEFINRNLKLFPNELPAELFNELIKPK 285

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             V  I +  E  +A  +   +  +L   +K++A++  +  L   V   +     N++I+ 
Sbjct: 286  KVRFISSPTENAQARYLPQWVHENLSNEEKENAVVLCNEALLLPVLHSIPEVVRNVNITM 345

Query: 418  GIPLSTTLHSSILTSLLNAIFKLND-------FMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            G PL+ T   S + ++L               + A+ T++KHP  +    +    +    
Sbjct: 346  GFPLAQTPVYSFINAILELQTSGYRTDSGRYIYDAVQTVLKHPYTRRLSDKAEPLQR--- 402

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                  + N+      +LK                      +    +     L  +I + 
Sbjct: 403  ---ELTKTNRFYPFPSELKK----------------DKFLDILFTPRNGIRELCVYITEL 443

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +  +      +  +                      D+           +  TL +    
Sbjct: 444  LKEVSVLYRQEQES----------------------DDIFNQLYRESLFKSFTLVNRLLN 481

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +I+  + ++        ++ ++++   +    E +  + I+G LE+R L+F  L+L  LN
Sbjct: 482  LIDN-NELQVRIETLKRLLNKILNAANIPFHGEPAIGMQIMGVLETRNLDFRNLLLLSLN 540

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-I 708
            EG  PK+  ++ F+   ++    + T E      A+ F        ++    +   +   
Sbjct: 541  EGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLMYNTSSDGLN 600

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKPFPPLEAQ 766
                SR++ + L+    +      + GQ   +    R            R   F      
Sbjct: 601  RGEWSRFMLQFLIEWPHEISREYLEAGQSPQNSKEIRITKTPEIIDRLYRTYDFSRNPDA 660

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--- 823
                S S +   ++     Y R + +L        + D    GT+FH     +       
Sbjct: 661  LI-LSPSALNTYLDCRLKFYFRYVARLKAPDEVSAEIDSALFGTIFHRSAQLVYLDLTAN 719

Query: 824  -INKNTPEINHLMKQ----------IIDSHF-----EKENLPPHIDIIWRHLFHKISHSF 867
              + +  ++  L++                F     +++     I +I   +        
Sbjct: 720  KRDVHKEDLERLLRDNIRLQNYVDIAFKEIFFHVPIDEKPEYNGIQLINSKVITSYLRQL 779

Query: 868  LEHEEK----IQSSIEKIFVN-IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
            L ++ +        +E+  V  I  +  +  + + + G  DR+D  K G + I DYKTG 
Sbjct: 780  LRNDLQYAPFRMMGMEQEVVEDIRIEGPVGKLSLRIGGTIDRMD-SKEGTLRIVDYKTGG 838

Query: 923  NPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            +PK     ++L  P         Q  L AA +      ++      +L YI         
Sbjct: 839  SPKVPANIEQLFTPAEGRPNYIFQTFLYAAIMARQQALKVAP----SLLYIHRAASESYS 894

Query: 973  CITNDKKKY-------SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
             +    +               ++  + L++++  + + ++ F        K     ++ 
Sbjct: 895  PVIEIGEARKPKLPVDDFSVYEDEFRERLLKLLEEIYDDKEEFT--QTKDTKKCEYCDFK 952

Query: 1026 HLA 1028
             + 
Sbjct: 953  AMC 955


>gi|253565410|ref|ZP_04842865.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251945689|gb|EES86096.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 957

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 137/1083 (12%), Positives = 310/1083 (28%), Gaps = 202/1083 (18%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L      +           L+   I  P KRA           +  +    P
Sbjct: 4    FLQLVAQDLYCKIGND-----------LSRTAIIFPNKRASLFFNEHLANQSD-QPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII----KDLYP 132
               S+ ++ +      L     L            +  L  I+R +            + 
Sbjct: 52   AYLSISELFQHLSVLKLGDPIRL------------VCELYKIFREETNSDESLDDFYFWG 99

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAA- 185
            E  +S        +  A  L   +  ++     +E L   + +    ++           
Sbjct: 100  ELLISDFDDVDKNLVHADKLFTNLQDLKNVMDDYEFLDQEQEQAIQQFFQNFSIEKRTLL 159

Query: 186  --DF------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
               F      L      + ++L EL  +        ++               +  G   
Sbjct: 160  KEKFISLWDKLGDIYHRYHKKLEELGFAYEGMLYRNVIEQLEP--DSLKYDCYVFVGFNV 217

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                       + N    A+     D                                  
Sbjct: 218  LNKVETHFFQQLQNAGK-ALFYWDYDVFY------------------------------- 245

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                                 ++  R     ++    + +     + L  ++ N      
Sbjct: 246  --------------------TQLPSRQKQRHEAGEFINRNLKLFPNELPAELFNELIKPK 285

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             V  I +  E  +A  +   +  +L   +K++A++  +  L   V   +     N++I+ 
Sbjct: 286  KVRFISSPTENAQARYLPQWVHENLSNEEKENAVVLCNEALLLPVLHSIPEVVRNVNITM 345

Query: 418  GIPLSTTLHSSILTSLLNAIFKLND-------FMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            G PL+ T   S + ++L               + A+ T++KHP  +    +    +    
Sbjct: 346  GFPLAQTPVYSFINAILELQTSGYRTDSGRYIYDAVQTVLKHPYTRRLSDKAEPLQR--- 402

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                  + N+      +LK                      +    +     L  +I + 
Sbjct: 403  ---ELTKTNRFYPFPSELKK----------------DKFLDILFTPRNGIRELCVYITEL 443

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +  +      +  +                      D+           +  TL +    
Sbjct: 444  LKEVSVLYRQEQES----------------------DDIFNQLYRESLFKSFTLVNRLLN 481

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +I+  + ++        ++ ++++   +    E +  + I+G LE+R L+F  L+L  LN
Sbjct: 482  LIDN-NELQVRIETLKRLLNKILNAANIPFHGEPAIGMQIMGVLETRNLDFRNLLLLSLN 540

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-I 708
            EG  PK+  ++ F+   ++    + T E      A+ F        ++    +   +   
Sbjct: 541  EGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLMYNTSSDGLN 600

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKPFPPLEAQ 766
                SR++ + L+    +      + GQ   +    R            R   F      
Sbjct: 601  RGEWSRFMLQFLIEWPHEISREYLEAGQSPQNSKEIRITKTPEIIDRLYRTYDFSRNPDA 660

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--- 823
                S S +   ++     Y R + +L        + D    GT+FH     +       
Sbjct: 661  LI-LSPSALNTYLDCRLKFYFRYVARLKAPDEVSAEIDSALFGTIFHRSAQLVYLDLTAN 719

Query: 824  -INKNTPEINHLMKQ----------IIDSHF-----EKENLPPHIDIIWRHLFHKISHSF 867
              + +  ++  L++                F     +++     I +I   +        
Sbjct: 720  KRDVHKEDLERLLRDNIRLQNYVDIAFKEIFFHVPIDEKPEYNGIQLINSKVITSYLRQL 779

Query: 868  LEHEEK----IQSSIEKIFVN-IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
            L ++ +        +E+  V  I  +  +  + + + G  DR+D  K G + I DYKTG 
Sbjct: 780  LRNDLQYAPFRMMGMEQEVVEDIRIEGPVGKLSLRIGGTIDRMD-SKEGTLRIVDYKTGG 838

Query: 923  NPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            +PK     ++L  P         Q  L AA +      ++      +L YI         
Sbjct: 839  SPKVPANIEQLFTPAEGRPNYIFQTFLYAAIMARQQALKVAP----SLLYIHRAASESYS 894

Query: 973  CITNDKKKY-------SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
             +    +               ++  + L++++  + + ++ F        K     ++ 
Sbjct: 895  PVIEIGEARKPKLPVDDFSVYEDEFRERLLKLLEEIYDDKEEFT--QTEDTKKCEYCDFK 952

Query: 1026 HLA 1028
             + 
Sbjct: 953  AMC 955


>gi|325269865|ref|ZP_08136475.1| hypothetical protein HMPREF9141_1685 [Prevotella multiformis DSM
            16608]
 gi|324987838|gb|EGC19811.1| hypothetical protein HMPREF9141_1685 [Prevotella multiformis DSM
            16608]
          Length = 958

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 138/1089 (12%), Positives = 299/1089 (27%), Gaps = 213/1089 (19%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +   LL+    +           ++ + +  P KRA   L          +    P
Sbjct: 4    FLEYVAQDLLDKYGTD-----------MSGIAVVFPNKRASLFLNQALAR-MAGRPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               ++ D   +     +                  +  L   +     +           
Sbjct: 52   AYITISDFFRQHSELTVADPIK------------SICDLYKTYGEVTGN----------- 88

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKYGMWWLLAADFLK 189
             +  +        + L    D I+              DL  L +  Y      A   L 
Sbjct: 89   -VGETLDQFYGWGQLLLADFDDIDKNMADAHRVFSNIRDLRELDDISYLNEEQKA--ELH 145

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
                 + +                L         +                   + + + 
Sbjct: 146  RFFANFDDNPEG------------LKERFIMLWGR----------LNDIYNQFKKKLHSQ 183

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 G +    ++            +  T             Q    +L      + + 
Sbjct: 184  GLAYEGMLYREVVEED----------DIQTQYKHYVFVGFNVLQKVEQRLFKRFKDEEKA 233

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                      M   +   +      D           + + +      +++ I A  E  
Sbjct: 234  SFYWDYDRYYMRRTNEAGNYIRRWLDRFP-NALPNDCDDLYDNLDKEKEISFISAPTENL 292

Query: 370  EAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            +A  I   LR      + K++A++  D +L + V   +     +++++ G PL  T  +S
Sbjct: 293  QARFITEWLRDGDRYKDGKRTAIVLCDEHLLQTVIHCIPNEVESLNVTTGYPLQQTPIAS 352

Query: 429  ILTSLLNAIFKLNDFMA-------IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            ++T LL    +             +  +++HP  K+  P+                  + 
Sbjct: 353  MVTQLLTLQTEGFSVQEQGYRLHYVNRVLRHPYGKYLVPDV----------------AEV 396

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
               +   +   +   A      H           D+     LVD + + I  +       
Sbjct: 397  IERLNKERQFYITPQAGSLFEYHP---------GDRRHLPALVDWLAETIRTIGVNGATD 447

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                   SI     L       +                                 ++A+
Sbjct: 448  KDPLFEESIFRMFTLLTRLSDLM-----------------------------ASGDLEAD 478

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
             I +  ++T+LI   ++    E +  + ++G LE+R L+FD +++   NEG  PK    +
Sbjct: 479  KIIFRRLLTQLIAATSIPFHGEPARGVQVMGVLETRNLDFDHVLVLSCNEGNMPKGVDDS 538

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRL 719
             F+  +++   +L T E  +   ++ F       + + +  +       T   SR++ +L
Sbjct: 539  SFIPHLIRKAYDLTTIENKVSIYSYYFHSLIQRAKDITFLYNNSTKGSRTGEMSRFMLQL 598

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +V           + GQ  +         ++    K+ +       +   +S + I   I
Sbjct: 599  MVEWNHPIHRQTLQAGQEPMH--------SEAQAVKKDEAVRRKLDEISYFSPTAINTYI 650

Query: 780  NDPYAVYARRILKLDFIPHFK-KDPDRTDRGTLFHNIITELIKKRINK------------ 826
            + P   + + I  +         D D    G +FH     + +K + K            
Sbjct: 651  SCPLKYFFKYIAGIKENDETDVDDVDNRMFGNIFHAAAQLMYEKLLPKEVITAKDIDYLL 710

Query: 827  ---------NTPEINHLMKQIIDSHFEKENLPP-----------HIDIIWRHLFHKISHS 866
                     +   I   +  ++D  F  E                + +I R +  K  H 
Sbjct: 711  KTGKSTRPTSAGHIPATLDDVVDEAFATELFHQQAGSRKHPKLNGLQLINREVIIKYLHQ 770

Query: 867  FLEHEEKIQSSIEKIFVN--IPAKMAIESIG----IHLTGFADRIDL----LKSGFVDIT 916
             L  +    + +  I     +   + ++  G    I   G  DR+D          + + 
Sbjct: 771  LLRIDR-RMTPLRVIGHEFDVRQTLTVKVNGTEKQIETGGRIDRLDEICLNTDCSRLRVV 829

Query: 917  DYKTG--DNPKKETAQKLIDP-----------QLSLEAAALKAGSFSQIDCRKV--ANLF 961
            DYKTG       +   ++ DP           Q  L +              +     L 
Sbjct: 830  DYKTGGKAAEPLKNVDEVFDPKNIGKKSDYTMQAMLYSLIEARHDPEHNPDHRPVSPALL 889

Query: 962  YIRLKQKFKIDCIT--NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
            +I+         +   + ++   A    +   +NL E +  + N +  F+          
Sbjct: 890  FIQHAGGKDYSPVLSMDGEEITDATIYEKDFFRNLTEKLEEINNPDIAFV--PTDDWDRC 947

Query: 1020 IQSEYDHLA 1028
                Y  + 
Sbjct: 948  KYCPYKQMC 956


>gi|265763689|ref|ZP_06092257.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256297|gb|EEZ27643.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 957

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 137/1083 (12%), Positives = 311/1083 (28%), Gaps = 202/1083 (18%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L      +           L+   I  P KRA           +  +    P
Sbjct: 4    FLQLVAQDLYCKIGND-----------LSRTAIIFPNKRASLFFNEHLANQSD-QPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII----KDLYP 132
               S+ ++ +      L     L            +  L  I+R +            + 
Sbjct: 52   AYLSISELFQHLSVLKLGDPIRL------------VCELYKIFREETNSDESLDDFYFWG 99

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAA- 185
            E  +S        +  A  L   +  ++     +E L   + +    ++           
Sbjct: 100  ELLISDFDDVDKNLVHADKLFTNLQDLKNVMDDYEFLDQEQEQAIQQFFQNFSIEKRTLL 159

Query: 186  --DF------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
               F      L    + + ++L EL  +        ++               +  G   
Sbjct: 160  KEKFISLWDKLGDIYRRYHKKLEELGFAYEGMLYRNVIEQLEP--DSLKYDCYVFVGFNV 217

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                       + N    A+     D                                  
Sbjct: 218  LNKVETHFFQQLQNAGK-ALFYWDYDVFY------------------------------- 245

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                                 ++  R     ++    + +     + L  ++ N      
Sbjct: 246  --------------------TQLPSRQKQRHEAGEFINRNLKLFPNELPAELFNELIKPK 285

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             V  I +  E  +A  +   +  +L   +K++A++  +  L   V   +     N++I+ 
Sbjct: 286  KVRFISSPTENAQARYLPQWVHENLSNEEKENAVVLCNEALLLPVLHSIPEVVRNVNITM 345

Query: 418  GIPLSTTLHSSILTSLLNAIFKLND-------FMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            G PL+ T   S + ++L               + A+ T++KHP  +    +    +    
Sbjct: 346  GFPLAQTPVYSFINAILELQTSGYRTDSGRYIYDAVQTVLKHPYTRRLSDKAEPLQR--- 402

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                  + N+      +LK                      +    +     L  +I + 
Sbjct: 403  ---ELTKTNRFYPFPSELKK----------------DKFLDILFTPRNGIRELCVYITEL 443

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +  +      +  +                      D+           +  TL +    
Sbjct: 444  LKEVSVLYRQEQES----------------------DDIFNQLYRESLFKSFTLVNRLLN 481

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +I+  + ++        ++ ++++   +    E +  + I+G LE+R L+F  L+L  LN
Sbjct: 482  LIDN-NELQVRIETLKRLLNKILNAANIPFHGEPAIGMQIMGVLETRNLDFRNLLLLSLN 540

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-I 708
            EG  PK+  ++ F+   ++    + T E      A+ F        ++    +   +   
Sbjct: 541  EGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLMYNTSSDGLN 600

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKPFPPLEAQ 766
                SR++ + L+    +      + GQ   +    R            R   F      
Sbjct: 601  RGEWSRFMLQFLIEWPHEISREYLEAGQSPQNSKEIRITKTPEIIDRLYRTYDFSRNPDA 660

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--- 823
                S S +   ++     Y R + +L        + D    GT+FH     +       
Sbjct: 661  LI-LSPSALNTYLDCRLKFYFRYVARLKAPDEVSAEIDSALFGTIFHRSAQLVYLDLTAN 719

Query: 824  -INKNTPEINHLMKQ----------IIDSHF-----EKENLPPHIDIIWRHLFHKISHSF 867
              + +  ++  L++                F     +++     I +I   +        
Sbjct: 720  KRDVHKEDLERLLRDNIRLQNYVDIAFKEIFFHVPIDEKPEYNGIQLINSKVITSYLRQL 779

Query: 868  LEHEEK----IQSSIEKIFVN-IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
            L ++ +        +E+  V  I  +  +  + + + G  DR+D  K G + I DYKTG 
Sbjct: 780  LRNDLQYAPFRMMGMEQEVVEDIRIEGPVGKLSLRIGGTIDRMD-SKEGTLRIVDYKTGG 838

Query: 923  NPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            +PK     ++L  P         Q  L AA +      ++      +L YI         
Sbjct: 839  SPKVPANIEQLFTPAEGRPNYIFQTFLYAAIMARQQALKVAP----SLLYIHRAASESYS 894

Query: 973  CITNDKKKY-------SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
             +    +               ++  + L++++  + + ++ F        K     ++ 
Sbjct: 895  PVIEIGEARKPKLPVDDFSVYEDEFRERLLKLLEEIYDDKEEFT--QTEDTKKCEYCDFK 952

Query: 1026 HLA 1028
             + 
Sbjct: 953  AMC 955


>gi|301163213|emb|CBW22763.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 957

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 137/1083 (12%), Positives = 311/1083 (28%), Gaps = 202/1083 (18%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L      +           L+   I  P KRA           +  +    P
Sbjct: 4    FLQLVAQDLYCKIGND-----------LSRTAIIFPNKRASLFFNEHLANQSD-QPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII----KDLYP 132
               S+ ++ +      L     L            +  L  I+R +            + 
Sbjct: 52   AYLSISELFQHLSVLKLGDPIRL------------VCELYKIFREETNSDESLDDFYFWG 99

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAA- 185
            E  +S        +  A  L   +  ++     +E L   + +    ++           
Sbjct: 100  ELLISDFDDVDKNLVHADKLFTNLQDLKNVMDDYEFLDQEQEQAIQQFFQNFSIEKRTLL 159

Query: 186  --DF------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
               F      L    + + ++L EL  +        ++               +  G   
Sbjct: 160  KEKFISLWDKLGDIYRRYHKKLEELGFAYEGMLYRNVIEQLEP--DSLKYDCYVFVGFNV 217

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                       + N    A+     D                                  
Sbjct: 218  LNKVETHFFQQLQNAGK-ALFYWDYDVFY------------------------------- 245

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                                 ++  R     ++    + +     + L  ++ N      
Sbjct: 246  --------------------TQLPSRQKQRHEAGEFINRNLKLFPNELPAELFNELIKPK 285

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             V  I +  E  +A  +   +  +L   +K++A++  +  L   V   +     N++I+ 
Sbjct: 286  KVRFISSPTENAQARYLPQWVHENLSNEEKENAVVLCNEALLLPVLHSIPEVVRNVNITM 345

Query: 418  GIPLSTTLHSSILTSLLNAIFKLND-------FMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            G PL+ T   S + ++L               + A+ T++KHP  +    +    +    
Sbjct: 346  GFPLAQTPVYSFINAILELQTSGYRTDSGRYIYDAVQTVLKHPYTRRLSDKAEPLQR--- 402

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                  + N+      +LK                      +    +     L  +I + 
Sbjct: 403  ---ELTKTNRFYPFPSELKK----------------DKFLDILFTPRNGIRELCVYITEL 443

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +  +      +  +                      D+           +  TL +    
Sbjct: 444  LKEVSVLYRQEQES----------------------DDIFNQLYRESLFKSFTLVNRLLN 481

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +I+  + ++        ++ ++++   +    E +  + I+G LE+R L+F  L+L  LN
Sbjct: 482  LIDN-NELQVRIETLKRLLNKILNAANIPFHGEPAIGMQIMGVLETRNLDFRNLLLLSLN 540

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-I 708
            EG  PK+  ++ F+   ++    + T E      A+ F        ++    +   +   
Sbjct: 541  EGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLMYNTSSDGLN 600

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKPFPPLEAQ 766
                SR++ + L+    +      + GQ   +    R            R   F      
Sbjct: 601  RGEWSRFMLQFLIEWPHEISREYLEAGQSPQNSKEIRITKTPEIIDRLYRTYDFSRNPGA 660

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--- 823
                S S +   ++     Y R + +L        + D    GT+FH     +       
Sbjct: 661  LI-LSPSALNTYLDCRLKFYFRYVARLKAPDEVSAEIDSALFGTIFHRSAQLVYLDLTAN 719

Query: 824  -INKNTPEINHLMKQ----------IIDSHF-----EKENLPPHIDIIWRHLFHKISHSF 867
              + +  ++  L++                F     +++     I +I   +        
Sbjct: 720  KRDIHKEDLERLLRDNIRLQNYVDIAFKEIFFHVPIDEKPEYNGIQLINSKVITSYLRQL 779

Query: 868  LEHEEK----IQSSIEKIFVN-IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
            L ++ +        +E+  V  I  +  +  + + + G  DR+D  K G + I DYKTG 
Sbjct: 780  LRNDLQYAPFRMMGMEQEVVEDIRIEGPVGKLSLKIGGTIDRMD-SKEGTLRIVDYKTGG 838

Query: 923  NPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            +PK     ++L  P         Q  L AA +      ++      +L YI         
Sbjct: 839  SPKVPANIEQLFTPAEGRPNYIFQTFLYAAIMARQQALKVAP----SLLYIHRAASESYS 894

Query: 973  CITNDKKKY-------SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
             +    +               ++  + L++++  + + ++ F        K     ++ 
Sbjct: 895  PVIEIGEARKPKLPVDDFSVYEDEFRERLLKLLEEIYDDKEEFT--QTEDTKKCEYCDFK 952

Query: 1026 HLA 1028
             + 
Sbjct: 953  AMC 955


>gi|260592505|ref|ZP_05857963.1| conserved hypothetical protein [Prevotella veroralis F0319]
 gi|260535551|gb|EEX18168.1| conserved hypothetical protein [Prevotella veroralis F0319]
          Length = 960

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 141/1091 (12%), Positives = 307/1091 (28%), Gaps = 215/1091 (19%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +   LL+    +           LA + +  P KRA   L  E       K    P
Sbjct: 4    FLEHIAKDLLDKYGTD-----------LAHIAVVFPNKRASLFLNQELAR-LAGKPIWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               ++ D   +     +                  +  L   +                 
Sbjct: 52   AYITISDFFRQHSKLTVADPIK------------SVCDLYKSYIEVTGH----------- 88

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKYGMWWLLAADFLK 189
             +  +        + L    D I+              DLH L +  Y          L+
Sbjct: 89   -VDETLDQFYGWGQLLLADFDDIDKNMADTKMVFANIRDLHELDDVSYLTDEQKT--ELR 145

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
                 + +        +P G +   +   A           I            + + + 
Sbjct: 146  RFFANFDD--------NPEGIREKFITLWARLKD-------IYDNF-------KQRLRSQ 183

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 G +     + +     +                     Q     L   L    + 
Sbjct: 184  GLAYEGMLYRDVAEQNSIETKYEH----------YIFIGFNVLQKVEQHLFKHLKKDNKA 233

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                      M   +   +      D       +  +    N+      +  I A  E  
Sbjct: 234  SFYWDYDRYYMNSNNEAGTYIHQWLDKFPNSLPNDNDEIYDNLGN-DKQINFISAPTENL 292

Query: 370  EAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            +A  I   L+      + K++ ++  D +L + V   +      ++I+ G PL  T  +S
Sbjct: 293  QARYITEWLKEDNRYKDGKRTVIVLCDEHLLQTVIHCIPDEVKTLNITTGFPLKQTPIAS 352

Query: 429  ILTSLLNAIFKLNDFMA-------IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            ++  LL    +             ++ +++HP  K+   E         L        + 
Sbjct: 353  MVMQLLALQLEGYSQSEQGYRLRYLSRVLRHPYGKYLISE------AERLIEKIKEEKEF 406

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              ++ ++  L   +     +  H+P                                   
Sbjct: 407  YVNVNEISQLTYHQS----DKQHLPE---------------------------------- 428

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                    +  W   T+  +       ++            TL +    ++ +   ++A+
Sbjct: 429  --------LIHWLSDTIRIIGMNGAAVNKDPLFQESVFRMYTLLTRLYDLM-SSGDLEAD 479

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
             I +  ++ +LI   ++    E +  + ++G LE+R L+FD +++   NEG  PK     
Sbjct: 480  KIIFRRLLNQLITTTSIPFHGEPAQGVQVMGVLETRNLDFDHVLVLSCNEGNMPKGVDDA 539

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRL 719
             F+  +++    L T +  +   ++ F       + + +  +       T   SR++ +L
Sbjct: 540  SFIPHLIRKAYGLTTIDNKVSIYSYYFHGLIQRAKDVTFLYNNSTQGSQTGEMSRFMLQL 599

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +V           K GQ  +    ++          +         +   +S + I   I
Sbjct: 600  MVEWNHPIHRLALKAGQELMRIDTEI--------VYKDDAVMNKLDEIGRFSPTAINTYI 651

Query: 780  NDPYAVYARRILKLDFIPHFKK-DPDRTDRGTLFHNIITELIKKRINKN------TPEIN 832
                  Y + I+ +  +   ++ D D    G +FH     + +K + ++        ++ 
Sbjct: 652  RCSLKFYFKYIVGISELEDVEEDDIDGRLFGNIFHCAAQLMYEKLLPRDIITAKNIDDLL 711

Query: 833  H---------------LMKQIIDSHFEKENLPPHI-----------DIIWRHLFHKISHS 866
                             ++ I+D  F                     +I R +  K    
Sbjct: 712  KTGKSSQSITSGNSQLTLEDIVDEVFATTLFNKEAGTRTYPKLNGLQLINREVIVKYLRQ 771

Query: 867  FLEHEEKIQSSIEKIFVNIPA--KMAIESIG----IHLTGFADRIDL---LKSG-FVDIT 916
             L  + +  + +  +         + I+       + + G  DR+D          + + 
Sbjct: 772  LLRID-QRSAPLRVLAHEFDVNRSITIKVGDTEKELRVGGRVDRLDEVFSDSDKAQLRVV 830

Query: 917  DYKTGD--NPKKETAQKLIDP------------QLSLEAAALKAGSFSQIDCRKVA---N 959
            DYKTG       ++  ++ DP            Q    +   +A    +++    A    
Sbjct: 831  DYKTGGRVAAPLKSIDEVFDPKNVAFKKSDYTMQAMFYSLI-EAEHDDKLNPLHHAVSPA 889

Query: 960  LFYIRLKQKFKIDCIT--NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEK 1017
            L +I+         I     K+     E  E   ++LI+ +  L N    F S   L   
Sbjct: 890  LLFIQHAGGDDYSPILSMEGKEITDVTEYKEPFFEHLIQQLGDLFNRNIAFSSTDNL--N 947

Query: 1018 SNIQSEYDHLA 1028
            +     Y  + 
Sbjct: 948  ACSYCPYKQMC 958


>gi|53713423|ref|YP_099415.1| hypothetical protein BF2134 [Bacteroides fragilis YCH46]
 gi|52216288|dbj|BAD48881.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 957

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 137/1083 (12%), Positives = 311/1083 (28%), Gaps = 202/1083 (18%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   L      +           L+   I  P KRA           +  +    P
Sbjct: 4    FLQLVAQDLYCKIGND-----------LSRTAIIFPNKRASLFFNEHLANQSD-QPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII----KDLYP 132
               S+ ++ +      L     L            +  L  I+R +            + 
Sbjct: 52   AYLSISELFQHLSVLKLGDPIRL------------VCELYKIFREETNSDESLDDFYFWG 99

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAA- 185
            E  +S        +  A  L   +  ++     +E L   + +    ++           
Sbjct: 100  ELLISDFDDVDKNLVHADKLFTNLQDLKNVMDDYEFLDQEQEQAIQQFFQNFSIEKRTLL 159

Query: 186  --DF------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
               F      L    + + ++L EL  +        ++               +  G   
Sbjct: 160  KEKFISLWDKLGDIYRRYHKKLEELGFAYEGMLYRNVIEQLEP--DSLKYDCYVFVGFNV 217

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                       + N    A+     D                                  
Sbjct: 218  LNKVETHFFQQLQNAGK-ALFYWDYDVFY------------------------------- 245

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                                 ++  R     ++    + +     + L  ++ N      
Sbjct: 246  --------------------TQLPSRQKQRHEAGEFINRNLKLFPNELPAELFNELIKPK 285

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             V  I +  E  +A  +   +  +L   +K++A++  +  L   V   +     N++I+ 
Sbjct: 286  KVRFISSPTENAQARYLPQWVHENLSNEEKENAVVLCNEALLLPVLHSIPEVVRNVNITM 345

Query: 418  GIPLSTTLHSSILTSLLNAIFKLND-------FMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            G PL+ T   S + ++L               + A+ T++KHP  +    +    +    
Sbjct: 346  GFPLAQTPVYSFINAILELQTSGYRTDSGRYIYDAVQTVLKHPYTRRLSDKAEPLQR--- 402

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                  + N+      +LK                      +    +     L  +I + 
Sbjct: 403  ---ELTKTNRFYPFPSELKK----------------DKFLDILFTPRNGIRELCVYITEL 443

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +  +      +  +                      D+           +  TL +    
Sbjct: 444  LKEVSVLYRQEQES----------------------DDIFNQLYRESLFKSFTLVNRLLN 481

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +I+  + ++        ++ ++++   +    E +  + I+G LE+R L+F  L+L  LN
Sbjct: 482  LIDN-NELQVRIETLKRLLNKILNAANIPFHGEPAIGMQIMGVLETRNLDFRNLLLLSLN 540

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-I 708
            EG  PK+  ++ F+   ++    + T E      A+ F        ++    +   +   
Sbjct: 541  EGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLMYNTSSDGLN 600

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKPFPPLEAQ 766
                SR++ + L+    +      + GQ   +    R            R   F      
Sbjct: 601  RGEWSRFMLQFLIEWPHEISREYLEAGQSPQNSKEIRITKTPEIIDRLYRTYDFSRNPNA 660

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--- 823
                S S +   ++     Y R + +L        + D    GT+FH     +       
Sbjct: 661  LI-LSPSALNTYLDCRLKFYFRYVARLKAPDEVSAEIDSALFGTIFHRSAQLVYLDLTAN 719

Query: 824  -INKNTPEINHLMKQ----------IIDSHF-----EKENLPPHIDIIWRHLFHKISHSF 867
              + +  ++  L++                F     +++     I +I   +        
Sbjct: 720  KRDIHKEDLERLLRDNIRLQNYVDIAFKEIFFHVPIDEKPEYNGIQLINSKVITSYLRQL 779

Query: 868  LEHEEK----IQSSIEKIFVN-IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
            L ++ +        +E+  V  I  +  +  + + + G  DR+D  K G + I DYKTG 
Sbjct: 780  LRNDLQYAPFRMMGMEQEVVEDIRIEGPVGKLSLKIGGTIDRMD-SKEGTLRIVDYKTGG 838

Query: 923  NPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            +PK     ++L  P         Q  L AA +      ++      +L YI         
Sbjct: 839  SPKVPANIEQLFTPAEGRPNYIFQTFLYAAIMARQQALKVAP----SLLYIHRAASESYS 894

Query: 973  CITNDKKKY-------SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
             +    +               ++  + L++++  + + ++ F        K     ++ 
Sbjct: 895  PVIEIGEARKPKLPVDDFSVYEDEFRERLLKLLEEIYDDKEEFT--QTKDTKKCEYCDFK 952

Query: 1026 HLA 1028
             + 
Sbjct: 953  AMC 955


>gi|296448613|ref|ZP_06890483.1| double-strand break repair protein AddB [Methylosinus trichosporium
            OB3b]
 gi|296253885|gb|EFH01042.1| double-strand break repair protein AddB [Methylosinus trichosporium
            OB3b]
          Length = 520

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 130/522 (24%), Positives = 216/522 (41%), Gaps = 13/522 (2%)

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
            A      I   +  L        +      ++   +     L+ +   E        + E
Sbjct: 2    ADADWRAIEDALARLDAALAPLATLPAEAPLTARVRAHAEALERIIGAEAAGEGAEQWLE 61

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                L++    +             +     RL               L ILG LE+RLL
Sbjct: 62   LVDALAAAGGGLAFDA-------GGYSSFFDRLAFETAAPSPRRAHPRLKILGLLEARLL 114

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
            + D ++L GL+E +WP       FL+R M++ L L   E+ IGQ AHDF +A   R ++ 
Sbjct: 115  DADLVLLAGLDETIWPPQAETGAFLNRTMRAQLGLSPPERRIGQTAHDFSLAFCAREVVL 174

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
            +RS + +  PT+ SR++ RL  L G + F   K RG         LD+  +     RP P
Sbjct: 175  SRSRKRDGSPTVVSRFVARLAALAGEN-FSACKARGDRARALAAALDHPAEIRAAARPLP 233

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
             PP+E +P   S + I++L  DPY+V+A  +L+L  +P    +    + G   H  + + 
Sbjct: 234  RPPVELRPVRLSVTRIEKLRRDPYSVFAEHVLRLAPLPPLGAEKGAREIGVAVHAALAKF 293

Query: 820  IKKRI-NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
             +         + +  +  +  +   +    P                 L  E + +   
Sbjct: 294  SEAHPKGPLPEDASERLLILARAELAEFLDDPSFIAFQWPRLETGLRHALAFERERRKIA 353

Query: 879  EKIFVNIPAKMAIE---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935
             + F+ I  +  +         L+  ADRI+L  +G   + DYKTG  P  +       P
Sbjct: 354  SETFIEIRGEWRLPLADGGVFTLSCVADRIELDAAGAAFVVDYKTGTPPSVKQVDAGFSP 413

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            QL+LEAA ++AG+F  I  R V+   Y+RL  K   +      K  S  ++  +   NL+
Sbjct: 414  QLTLEAAMIEAGAFPPIGVRAVSGAAYVRLGGKDGGETRELKFKDKSFSDVVAEHRANLL 473

Query: 996  EIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            E++   ++   P+ S     E ++   +YDHLARVAEW  + 
Sbjct: 474  ELLNQFRDPATPYPSRP-FVEFASRYGDYDHLARVAEWSRDG 514


>gi|237716367|ref|ZP_04546848.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407969|ref|ZP_06084517.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644252|ref|ZP_06722021.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294807962|ref|ZP_06766741.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229444014|gb|EEO49805.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354777|gb|EEZ03869.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640416|gb|EFF58665.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294444846|gb|EFG13534.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 959

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 146/1087 (13%), Positives = 306/1087 (28%), Gaps = 204/1087 (18%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
              F + +   L      +           L+   +  P KRA           +  +   
Sbjct: 2    QSFLQLVAHDLYAKIGND-----------LSRTALIFPNKRANLFFNEYLAGESD-QPIW 49

Query: 75   LPIIKSLGDVVEEKFTADLLLSY----NLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
             P   S+ D+ ++               L        +  E       W   L     D+
Sbjct: 50   SPAAMSISDLFQKLSVQKSGDPIRLVCELYKVFKEETQSQETLDDFYFWGELLISDFDDV 109

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK----------NEKYGMW 180
                     +         ++L +++D    E    E   A++            +    
Sbjct: 110  DKNM-----VDADKLFSNLQDLKNLMDDY--EFLDKEQEEAIQQFFQNFSIERRTELKEK 162

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
            ++   D L     ++ E L EL  +        ++        +      I  G      
Sbjct: 163  FISLWDKLGTIYHHYRENLTELGIAYEGMLYRNVIEQLDT--DQLKYDKYIFVGFNVLNK 220

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                                          +  + +    +   +       Q    +  
Sbjct: 221  VEN-------------------------EFFRKLKDAGKALFYWDYDIFYTQQIRKHEAG 255

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
            +FL                   R++    + LP                 +  K    + 
Sbjct: 256  EFLK------------------RNLGEFPNELPESFF-------------DTFKEPKKIR 284

Query: 361  LIEADNEREEAISIAIALR-------MSLDENKKKSALITADRNLARRVKLELTRFGINI 413
             I A  E  +A  +   ++          +E +K++A++  +  L   V   + +   N+
Sbjct: 285  YISASTENAQARFLPEWIKMITDNHSQIAEEKEKENAVVLCNEALLLPVLHSIPQEVKNV 344

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSR 466
            +I+ G PL+ T   S + + +               + A++ ++KHP  +          
Sbjct: 345  NITMGFPLAQTPIYSFINAAMELQTNGYRSDTGRFTYEAVSAILKHPYTRQISS------ 398

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                LE    + N+      +LK                           +     L D+
Sbjct: 399  HAGPLERELTKTNRFYPLPSELKQ----------------DDFLATLFTPRNGIKELCDY 442

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
            +++ I  + T    +                           +     L+ E   ++ + 
Sbjct: 443  LIELIKDISTIYRKEGEY------------------------NDIFNQLYRESLFQSHTK 478

Query: 587  LFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
            +           +         +IT+++    +    E +  + ++G LE+R L+F  LI
Sbjct: 479  INRLYSLIESGELSIRTDTLKRLITKVLTASNIPFHGEPAIGMQVMGVLETRNLDFRNLI 538

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLR 704
            +  LNEG  PK+  ++ F+   ++    + T E      A+ F        ++    +  
Sbjct: 539  ILSLNEGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLLYNTS 598

Query: 705  ENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
             +       SR++ +LLV G  D      + GQ            T +   +  + +   
Sbjct: 599  SDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSIQEIQIEKTPEVLRRIYRTYDST 658

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                   S S +   ++     Y R +  L        + D    GT+FH          
Sbjct: 659  NPSSVILSPSALNAYLDCRLRFYYRYVAGLKTPDEVSAEIDSALFGTIFHLSAQLAYTDL 718

Query: 824  INKN----TPEINHLMKQI------IDSHFEKENLPPH---------IDIIWRHLFHKIS 864
                      +I  L++        +D  F++E              I +I   +     
Sbjct: 719  TANGKMIQKEDIERLLRNEVKLQSYVDQAFKEELFKVAPEEKPEYNGIQLINSKVIVSYL 778

Query: 865  HSFLEHEEKIQSSIEKIFVNIPA--KMAI--ESIGIHLT--GFADRIDLLKSGFVDITDY 918
               L ++ +  +  E + +      ++ I        L   G  DR+D  K   + I DY
Sbjct: 779  KQLLRNDLQ-YTPFEMVAMEKKVSEEITIQTGQGPFTLRLGGTIDRMD-AKESTLRIVDY 836

Query: 919  KTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
            KTG +PK     ++L  P         Q  L AA +       +       L YI     
Sbjct: 837  KTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRKQSLMVAPA----LLYIHRAAS 892

Query: 969  FKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
                 +    +               ++  + L  ++  + N ++PF+       K    
Sbjct: 893  ESYSPVIEMGEPRKPKIPVNNFAFFEDEFRERLQALLEEIFNEKEPFM--QTEDTKKCSY 950

Query: 1022 SEYDHLA 1028
             ++  + 
Sbjct: 951  CDFKAIC 957


>gi|298481371|ref|ZP_06999564.1| conserved hypothetical protein [Bacteroides sp. D22]
 gi|298272575|gb|EFI14143.1| conserved hypothetical protein [Bacteroides sp. D22]
          Length = 959

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 146/1087 (13%), Positives = 306/1087 (28%), Gaps = 204/1087 (18%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
              F + +   L      +           L+   +  P KRA           +  +   
Sbjct: 2    QSFLQLVAHDLYAKIGND-----------LSRTALIFPNKRANLFFNEYLAGESD-QPIW 49

Query: 75   LPIIKSLGDVVEEKFTADLLLSY----NLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
             P   S+ D+ ++               L        +  E       W   L     D+
Sbjct: 50   SPAAMSISDLFQKLSVQKSGDPIRLVCELYKVFKEETQSQETLDDFYFWGELLISDFDDV 109

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK----------NEKYGMW 180
                     +         ++L +++D    E    E   A++            +    
Sbjct: 110  DKNM-----VDADKLFSNLQDLKNLMDNY--EFLDKEQEEAIQQFFQNFSIERRTELKEK 162

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
            ++   D L     ++ E L EL  +        ++        +      I  G      
Sbjct: 163  FISLWDKLGTIYHHYRENLTELGIAYEGMLYRNVIEQLDT--DQLKYDKYIFVGFNVLNK 220

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                                          +  + +    +   +       Q    +  
Sbjct: 221  VEN-------------------------EFFRKLKDAGKALFYWDYDIFYTQQIRKHEAG 255

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
            +FL                   R++    + LP                 +  K    + 
Sbjct: 256  EFLK------------------RNLGEFPNELPESFF-------------DTFKEPKKIR 284

Query: 361  LIEADNEREEAISIAIALR-------MSLDENKKKSALITADRNLARRVKLELTRFGINI 413
             I A  E  +A  +   ++          +E +K++A++  +  L   V   + +   N+
Sbjct: 285  YISASTENAQARFLPEWIKMITDNHSQIAEEKEKENAVVLCNEALLLPVLHSIPQEVKNV 344

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSR 466
            +I+ G PL+ T   S + + +               + A++ ++KHP  +          
Sbjct: 345  NITMGFPLAQTPVYSFINAAMELQTNGYRSDTGRFTYEAVSAILKHPYTQQISS------ 398

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                LE    + N+      +LK                           +     L D+
Sbjct: 399  HAGPLERELTKTNRFYPLPSELKQ----------------DDFLTTLFTPRNGIKELCDY 442

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
            +++ I  + T    +                           +     L+ E   ++ + 
Sbjct: 443  LIELIKDISTIYRKEGEY------------------------NDIFNQLYRESLFRSHTK 478

Query: 587  LFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
            +           +         +IT+++    +    E +  + ++G LE+R L+F  LI
Sbjct: 479  INRLYSLIESGELSIRTDTLKRLITKVLTASNIPFHGEPAIGMQVMGVLETRNLDFRNLI 538

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLR 704
            +  LNEG  PK+  ++ F+   ++    + T E      A+ F        ++    +  
Sbjct: 539  ILSLNEGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLLYNTS 598

Query: 705  ENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
             +       SR++ +LLV G  D      + GQ            T +   +  + +   
Sbjct: 599  SDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSIQEIQIEKTPEVLRRIYRTYDST 658

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                   S S +   ++     Y R + +L        + D    GT+FH          
Sbjct: 659  NPSSVILSPSALNAYLDCRLRFYYRYVARLKTPDEVSAEIDSALFGTIFHLSAQLAYTDL 718

Query: 824  INKN----TPEINHLMKQI------IDSHFEKENLPPH---------IDIIWRHLFHKIS 864
                      +I  L++        +D  F++E              I +I   +     
Sbjct: 719  TANGKMIQKEDIERLLRNEVKLQSYVDQAFKEELFKVAPEEKPEYNGIQLINSKVIVSYL 778

Query: 865  HSFLEHEEKIQSSIEKIFVNIPA--KMAI--ESIGIHLT--GFADRIDLLKSGFVDITDY 918
               L ++ +  +  E + +      ++ I        L   G  DR+D  K   + I DY
Sbjct: 779  KQLLRNDLQ-YTPFEMVAMEKEVSEEITIQTGQGPFTLRLGGTIDRMD-AKESTLRIVDY 836

Query: 919  KTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
            KTG +PK     ++L  P         Q  L AA +       +       L YI     
Sbjct: 837  KTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRKQSLMVAPA----LLYIHRAAS 892

Query: 969  FKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
                 +    +               ++  + L  ++  + N ++PF        K    
Sbjct: 893  ESYSPVIEMGEPRKPKIPVNNFAFFEDEFRERLQALLEEIFNEKEPFT--QTEDTKKCSY 950

Query: 1022 SEYDHLA 1028
             ++  + 
Sbjct: 951  CDFKAIC 957


>gi|72160927|ref|YP_288584.1| ATP-dependent DNA helicase [Thermobifida fusca YX]
 gi|71914659|gb|AAZ54561.1| putative ATP-dependent DNA helicase [Thermobifida fusca YX]
          Length = 1044

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 146/1056 (13%), Positives = 296/1056 (28%), Gaps = 117/1056 (11%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +     ++ A+++                 A V +   +++A QELR        +++
Sbjct: 42   PGTGKTTTIVEAIVDRVENRGVDP--------AHVLVLTFSRKAAQELRERITARL-RRT 92

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
               P+  +           +     +  P      RLL     ++  R  L   + D  P
Sbjct: 93   VREPLALTFHSYAYALIRREFQRVGDHAP------RLLSGPEQLMEVRELLKGELADGAP 146

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
              P        +    A+ L D +  ++      +D+  L        W+ A  FL+  +
Sbjct: 147  GWPEQ-LRPMLHTRGFAEELRDFLMRVQERGLHADDVRELGRRHGREDWVAAGGFLERYT 205

Query: 193  KYWTERLVELNASSPVGY--QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
              +    V     + +       L   + +   +  +  + +     + PA   L+  +A
Sbjct: 206  GRFDIAPVPTFNYAELVRVAANLLNDPDIQARERAARKVVFVDEYQDTDPAQEELLHALA 265

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                  +V+   D       +     ++           T     +      L   R   
Sbjct: 266  GDGRDLVVV--GDPDQSIYGFRGAEVRNILNFPDRFRTPTGDPAPVVA----LHTCRRSG 319

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
              L  VS  +  R   +               +   N +P          ++ A++   E
Sbjct: 320  AELLRVSRALAQRLPAV-------PGPGGEGVNAHRNLVPAEGTPPGRARMLLAESPVHE 372

Query: 371  AISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTL 425
            A  IA  LR +   +     + + L+ +       ++  L    + + +     PL++  
Sbjct: 373  AAVIADLLRRAHLIDGVPWSRMAVLVRSVTRHVPVLRRALIAADVPVTVDGDDLPLASEP 432

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                +  LL   F        A       A        L R   AL  + L         
Sbjct: 433  LVRSMLLLLRCAFHPERLDEEAAHNLLTSAFGEADALGLRRLGRALRQLELDAGGRRP-- 490

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
                       A      H P     +  E +  A  +   +      +      +    
Sbjct: 491  ---------AAALLAEILHDPRDLVMVDPEVRAPAERIATLLRLVRDSIAEGANAEEVLW 541

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
                 S      +   Q            L         ++ +   +  GS         
Sbjct: 542  RMWHHSGLADTLLRASQAGGRHGAAADRELDSVMALFERAARYCDRLPPGSPEGF----L 597

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
             D+  + I G+T+  +  +  T+ IL    S+ L +D +++ G+ EG WP    +   L 
Sbjct: 598  EDLEAQEIPGDTLAEQAPQGETVRILTAHRSKGLEWDLVVVAGVQEGTWPDLRLRGSLLG 657

Query: 666  RVMQSDLNLKTAE---------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                 D     AE         +   +    +      R  +   ++   ++    SR+L
Sbjct: 658  VEQLLDTVGGFAETSPAAVVSKQLDEERRLFYVALTRARRELVVTAVGGEDVEERPSRFL 717

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP------------------- 757
              L    G         R          L  T   PH   P                   
Sbjct: 718  TELG--LGEPERLATGYRWLSLPALVADLRATLLDPHTDEPVRRAAAAHLARLADAGVRG 775

Query: 758  --------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               LE +    S S++++                +         
Sbjct: 776  ADPAEWYALTELSDSSPLVLEGEQIRISPSQVEKFTTCELRWLLETAAGAEKRRA----- 830

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
              +  G++ H +         N + PE+   M QI     +            R    ++
Sbjct: 831  -ASGIGSIVHALARI---AAENPDLPELLRRMDQIWSD-LDFGGPWYAEKQ--RERAEEM 883

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
               FL+ +++  +  E +      ++ +    I ++G  DR++    G   I D KTG  
Sbjct: 884  LQRFLDWQKE--NPRELVATEKKFRVEV--GNIEISGQVDRLERDAEGRGVIVDIKTGTA 939

Query: 924  PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
                   +   PQL +   AL   +F      +      +++  +          +   A
Sbjct: 940  VPDREISRH--PQLGVYQLALLMAAFEHYGLVEPGGAALLQIGDRKTAKEQ---TQPALA 994

Query: 984  DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
            D+   +  + L++ V     G + F +    S +  
Sbjct: 995  DDADPEWPQRLVQKVAAGMAGAR-FRAKATPSCRHC 1029


>gi|307565977|ref|ZP_07628435.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307345165|gb|EFN90544.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 962

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 134/1074 (12%), Positives = 286/1074 (26%), Gaps = 213/1074 (19%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +   LL                 LA V +  P KRA   L  E  +         P
Sbjct: 4    FLSYVAEDLLRKY-----------QDNLAHVAVVFPNKRAALFLNQEIAQRADG-PVWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
               ++ ++   +    +         L+    +I    E       W   L     D+  
Sbjct: 52   NYITISELFRTQSDLIIADPIKSICILHKVYMDITHKAEPLDQFYGWGELLLADFDDIDK 111

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---------KNEKYGMWWLL 183
               L+        +   K L  +      +    E +  L           +     +  
Sbjct: 112  N--LAPTEKLLGLLSANKELESL------DYLTPEQISELKKVFTNISVDEDSLRRRFQE 163

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243
                L      +  RL  L  +        ++  E   L        +  G         
Sbjct: 164  FWSKLFDIYTEYKRRLRALGLAYEGMLYRDVIEKERFSL---PYKKYVFVGFNVLQKVEQ 220

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             L        + A      D +                                  L   
Sbjct: 221  ELF---YKLKDKAAFYWDYDNYY---------------------------------LSKG 244

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                  ++R   +                              +++ N      D++ I 
Sbjct: 245  REAGRYIQRWLEMFP---------------------NELPHYNHEVFNNLDAPKDISFIA 283

Query: 364  ADNEREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            +  E  +A  I   L+ +    + +K+A++  D +L + V   +      ++++ G PL 
Sbjct: 284  SPTENMQARYITTWLKENSRYKDGRKTAIVLCDESLLQTVIHCVPTEVEELNVTTGYPLR 343

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             +L +S +  L+    +    M                                      
Sbjct: 344  QSLIASFIAQLIRLQVEGYSLME------------------------------------- 366

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                        R+         P+ +   S  ++ LA +  D     +      +   +
Sbjct: 367  ---------EKFRLRYATRVLRHPYAKYVWSNAEELLAKMNADRQFYVL--WEGIEYCPH 415

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC---IK 599
                 L+   W       +      E               LS L   +         + 
Sbjct: 416  DAQNMLAFVKWLAQITKVVGINGASEGDPFFQESVFRMYTLLSRLIELMTAEEDGSYYLD 475

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             + I +  + T+L++  +V    E +  + I+G LE+R L+F+ +++   NEG  PK   
Sbjct: 476  RDIIIFRRLFTQLVNATSVPFHGEPAKGVQIMGVLETRNLDFEHVLILSCNEGNMPKGVD 535

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQ 717
               F+   ++    L T    +   ++ F         +    +     + T   SR++ 
Sbjct: 536  DASFIPHAIRHAFELTTVNNKVSIFSYYFHRLIQRAGDVTILYNNSTQGVKTGEMSRFML 595

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            +L+V      +       + Y     +  +       ++ +           +S + I  
Sbjct: 596  QLMVE-----WSKPSCLVRRYTLKAGQQQHKISIEPVQKDERVMEKLVHIPKFSPTAINT 650

Query: 778  LINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHNIITELIKKR---INKNTPEINH 833
             I  P   + + ++ ++      +D  D    G +FH     +             +I  
Sbjct: 651  FITCPVKFFYKYVVGIEEQNVVDEDSIDNRIFGNIFHKAAELMYNDIFCAKELTKADIEK 710

Query: 834  LMKQ--IIDSHFEKENLPP----------------HIDIIWRHLFHKISHSFLEHEEKIQ 875
            ++ +  ++DS  E+                      + I+ + +  K     L  +  + 
Sbjct: 711  VILKPNVLDSVIEEAIALELFNKKDFKKGSKLNLNGLQILNKEVVKKYLVRLLRLDYDVA 770

Query: 876  SSIEKIF---VNIPAKMAIESIGI--HLTGFADRIDL----LKSG----FVDITDYKTGD 922
                      V    ++++        + G  DR+D+    L+       + + DYKTG 
Sbjct: 771  PIRVIAHEFDVEDEVEISLMGKPYKKRIGGRVDRLDVATYMLEKNTMIRRMRVVDYKTGR 830

Query: 923  --NPKKETAQKLID-----------PQLSLEAAALKAGSFSQIDCRKVA----------- 958
                       +              Q  L    +      Q                  
Sbjct: 831  KEAKPMADVPSIFSADNIKNKSDYVMQAMLYGLLIADNKVKQAPKTSPELFNKEHRPVAP 890

Query: 959  NLFYIRLKQKFKIDCIT--NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
             L +I+   K     I   + ++     +  ++ +  L  ++  L + EQPF  
Sbjct: 891  ALLFIQKTNKKAYSPIVVIDKQEVIDVAKYRDEFMSELKAVLERLYDKEQPFTP 944


>gi|325860083|ref|ZP_08173209.1| hypothetical protein HMPREF9303_1087 [Prevotella denticola CRIS
            18C-A]
 gi|325482368|gb|EGC85375.1| hypothetical protein HMPREF9303_1087 [Prevotella denticola CRIS
            18C-A]
          Length = 957

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 137/1089 (12%), Positives = 305/1089 (28%), Gaps = 213/1089 (19%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +   LL     +           ++ V +  P KRA   L               P
Sbjct: 3    FLEYVAQDLLKKYGTD-----------MSDVAVVFPNKRASLFLNQALAR-MAGHPLWSP 50

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               ++ D   +     +                  ++ L   +     +           
Sbjct: 51   AYVTISDFFRQHSGLTVADPIK------------SISDLYKTYVEVTGN----------- 87

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKYGMWWLLAADFLK 189
             +  +        + L    D I+              +L  L +  Y      A   L 
Sbjct: 88   -VGETLDQFYGWGQLLLADFDDIDKNLADARLIFSNISNLRELDDISYLNDEQKA--ELH 144

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
                 + ++        P G +   +               +              + + 
Sbjct: 145  RFFANFDDK--------PEGIRERFI--------------TLWDRLNDIYNRFREKLRSQ 182

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 G +     +       +                     Q    ++      + + 
Sbjct: 183  ELAYEGMLYRDVAEQADIQTRYQH----------YAFVGFNVLQKVEQRVFKRFKEEEKA 232

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                      M GR+            +   +     +++ +      +++ + A  E  
Sbjct: 233  DFYWDYDRYYM-GRTNEAGNYIRQWLDTFPNSLPNDNDELYDNLGKEKEISFVSAPTENL 291

Query: 370  EAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            +A  I   LR      +   +A++  D +L + V   +      ++I+ G PL  T  +S
Sbjct: 292  QARYITEWLRKDGRYKDGTHTAIVLCDEHLLQTVIHCIPSEVETLNITTGYPLQQTPIAS 351

Query: 429  ILTSL-------LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            ++T L        +   +      ++ +++HP  K+  P          LE ++      
Sbjct: 352  MVTQLLILQTEGYSVQEQGYRLHHVSRVLRHPYGKYLIPNVS-----EVLEQLSKDHRFY 406

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                                                  A  L+++               
Sbjct: 407  IPP----------------------------------RAGTLLEYHPS------------ 420

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                   +++DW    +  +      +   L          TL +  S ++ TG  ++A+
Sbjct: 421  -DRQHLPALADWLTRNIRLIGVNGAADKDPLFE-ESVFRMFTLLTRLSDLM-TGGDLEAD 477

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
             + +  ++T+L+   ++    E +  + ++G LE+R L+FD +++   NEG  PK    +
Sbjct: 478  KVVFRRLLTQLVSSTSIPFHGEPARGVQVMGVLETRNLDFDHVLVLSCNEGNMPKGVDDS 537

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRL 719
             F+  +++   +L T +  +   ++ F       + + +  +       T   SR++ +L
Sbjct: 538  SFIPHLIRKAYDLTTVDNKVSIYSYYFYSLIQRAKDITFLYNNSTQGSRTGEMSRFMLQL 597

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +V           + GQ  +          +     + +       +   +S + I   I
Sbjct: 598  MVEWNHPIHRMTLQAGQVPMR--------CEAKAVTKDEAVLNKLDEISYFSPTAINTYI 649

Query: 780  NDPYAVYARRILKLDFIPHFK-KDPDRTDRGTLFHNIITELIKKRINKN----------- 827
            +     Y + I +++        D D    G +FH+    +  K + K            
Sbjct: 650  SCHLKYYFKYIAEINEKEETDIDDVDNRMFGNIFHSAAQLMYGKLLPKEVITDKNIDYVL 709

Query: 828  ----------TPEINHLMKQIIDSHFEKENLPP-----------HIDIIWRHLFHKISHS 866
                         I   M  ++D  F  E                + +I R +  K  + 
Sbjct: 710  KTGKSAQPFTADGIKSTMDDVVDEAFATELFHQQPGSRRHPRLNGLQLINREVIKKYLYQ 769

Query: 867  FLEHEEKIQSSIEKIFVN--IPAKMAIESIG----IHLTGFADRIDL----LKSGFVDIT 916
             L  +    + +  I     +   + I   G    I   G  DR+D      +   + + 
Sbjct: 770  LLRIDR-RTAPLRVIGHEFNVKRTLLINVNGTEKQIETGGRIDRLDEVLVGTEKARLRVV 828

Query: 917  DYKTG--DNPKKETAQKLIDP-----------QLSLEAAALKAGSFSQIDCRKV--ANLF 961
            DYKTG       +  + + DP           Q  L +              +     L 
Sbjct: 829  DYKTGSKTAEPLKNVEAVFDPKNIEKKSDYTMQAMLYSLIESRYDILHNPGHRPVSPALL 888

Query: 962  YIRLKQKFKIDC--ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
            +I+           I + ++        +  L+ L E +  + N + PF     L  +  
Sbjct: 889  FIQHSGGEDYTPVIIMDGEEMTDVTLYEKDFLRKLTETLEEIHNPDVPFAPTDDL--ERC 946

Query: 1020 IQSEYDHLA 1028
                Y  + 
Sbjct: 947  RYCPYRQMC 955


>gi|319902332|ref|YP_004162060.1| hypothetical protein Bache_2509 [Bacteroides helcogenes P 36-108]
 gi|319417363|gb|ADV44474.1| hypothetical protein Bache_2509 [Bacteroides helcogenes P 36-108]
          Length = 989

 Score =  271 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 144/1085 (13%), Positives = 295/1085 (27%), Gaps = 170/1085 (15%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
            +PF + +   L +                L+   I  P KRA           +  +   
Sbjct: 2    TPFLQLVAHDLHSKIG-----------DDLSRTAIVFPNKRASLFFNEYLAAES-TRPLW 49

Query: 75   LPIIKSLGDVVEEKFTADLLLSY----NLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
             P   S+ ++                  L        R  E       W   L     D 
Sbjct: 50   SPAYVSISELFRRLSPLKQGDPIRLTCELYKVFRQETRSEETLDDFYFWGELLISDFDDA 109

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEE-KKWEDLHAL----------KNEKYGM 179
                      +  +A  L  NL D+ DI++ ++    E   A+          K  +   
Sbjct: 110  DK--------NLVDAARLFANLRDLKDIMDDQDFLDPEQEEAIRQFFLNFSIEKRTELKA 161

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
             ++   D L      + E L  L  +        ++        +      +  G     
Sbjct: 162  RFISLWDKLGDIYHRYRENLTRLGIAYEGMLYRNVIEQLDT--DQLRYDRYVFVGFNVLN 219

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS-----NTTYSTHPQY 294
                     + +    A+     D              +               +  P+ 
Sbjct: 220  KVETHFFLRLQDAGK-AMFYWDYDTFYTRMPHQQTPPYNHEAGEFILRNLKLFPNQLPET 278

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            +   L     +           +  +       + +    + +     D  ++ +     
Sbjct: 279  AFDTLRLPKQVTFISAPTENAQARHLPQWIRETTGTQRAEEATSRERKDGTDDTLRTKAA 338

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
                +                          +K++A++  + +L   V   +     N++
Sbjct: 339  ANDGIT------------------------KEKENAVVLCNESLLLPVLHSIPPTVKNVN 374

Query: 415  ISAGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
            I+ G PL  T   S + SL+               + A+  ++KHP  +   P       
Sbjct: 375  ITMGFPLVQTPVYSFINSLMELQTTGYRSDTGRYTYEAVLAVLKHPYTRLLSP------L 428

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
               LE    + N+      +L+                                  +  +
Sbjct: 429  AETLERQLTQNNRFYPLPSELRQ------------------------------DTFLTRV 458

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                + +                    ++TV   +    D+           +  T+++ 
Sbjct: 459  FTPQSSISALCLYLTDL--------LREVTVIYRRKDDSDDIFNQLYRESLFKSYTIANR 510

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
               +IET             ++ RL+    +    E +  + ++G LE+R L+F  LI+ 
Sbjct: 511  LLNLIETEELNGLRTDTLKRLLGRLLTSANIPFHGEPAIGMQVMGVLETRNLDFRNLIIL 570

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA-NGTRHLIYTRSL-RE 705
             LNEG  PK   +  F+   ++    + T E      A+ F        ++    S   +
Sbjct: 571  SLNEGQLPKAGGEASFIPYNLRRAFGMTTIEHKNAVYAYYFYRLVQRAENITLLYSTASD 630

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                   SR++ + L+    D      + GQ            T +   +  + +     
Sbjct: 631  GMNRGEMSRFMLQFLIESPHDISLRYLEAGQSPQSTREIRIDKTPEILERMYRTYDIRRN 690

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
                +S S +   ++     Y R I +L        + D    GT+FH       +    
Sbjct: 691  SKALFSPSALNAYLDCRLKFYYRYIAQLKAPNEVSAEIDSALFGTIFHYSAQLAYEALTT 750

Query: 826  KNTPEINHLMKQII----------DSHFEKENLPP---------HIDIIWRHLFHKISHS 866
                     ++ ++          D+ F+KE                +I   +       
Sbjct: 751  HGKEIRKEALEALLKNDTRLQSYVDNAFKKEFFHVPSTEQPEYNGTQLIHSKVIASYLRQ 810

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIG------IHLTGFADRIDLLKSGFVDITDYKT 920
             L ++ +  +      +  P    IE+        + + G  DR+D      + I DYKT
Sbjct: 811  LLRNDLQ-YAPFNMEAMEKPVDETIETDTPLGKLLLKIGGTIDRMDSKGD-TLRIVDYKT 868

Query: 921  GDNPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
            G  PK  E  ++L  P         Q  L AA +      ++       L YI       
Sbjct: 869  GGVPKIPENIEQLFTPSTSRPNYIFQTFLYAAIMCRKQPLKVAPA----LLYIHKAASES 924

Query: 971  IDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
               +                    ++  + L  ++  + + E PF       +      +
Sbjct: 925  YSPVIEMGAPRQPKIPISNFALHEDEFRERLQTLLREIYSRETPFDQTEDTKQ--CEFCD 982

Query: 1024 YDHLA 1028
            +  L 
Sbjct: 983  FRSLC 987


>gi|163754617|ref|ZP_02161739.1| hypothetical protein KAOT1_17018 [Kordia algicida OT-1]
 gi|161325558|gb|EDP96885.1| hypothetical protein KAOT1_17018 [Kordia algicida OT-1]
          Length = 921

 Score =  271 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 150/1019 (14%), Positives = 322/1019 (31%), Gaps = 173/1019 (16%)

Query: 44   LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            ++++T+ +P+KRA   L+ E  +    K++  P I S+ ++VEE      + +  L    
Sbjct: 19   ISNLTLVLPSKRAGVFLKHELSQQIQ-KTSFAPNILSIEELVEEISGYTSVSNTEL---- 73

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                    L     +++   P   ++              +    A+ L    + I+   
Sbjct: 74   --------LFEFYTVYKELTPKDAQE-----------PFDSFSKWAQILLQDFNEIDRYL 114

Query: 164  KKWEDL-HALKNEKYGMWWL----------LAADF---LKIASKYWTERLVELNASSPVG 209
               +D+ + L   +    W               F   L+      T R+ +   +    
Sbjct: 115  ISHKDIFNYLSAIQRIQQWSPDKEPSDLMNNYLKFWDKLEHYYGALTNRITQKGIAYQGL 174

Query: 210  YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
                 + +   +L K         G      A  +++               L+  +   
Sbjct: 175  VYREAVDSLEFYLQKNEDKKHYFIGFNALNTAEEKIIQEF------------LEVGLAEI 222

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
            +W+           ++  +   P++  +  L     +    ++                 
Sbjct: 223  LWD-----------TDHVFFDDPEHDASLFLRRHRYEWNYFQKHDFSW------------ 259

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKK 387
                               + N      ++ +I       +A  I   L      DE  +
Sbjct: 260  -------------------VANNFSSKKNIDIIGIPKNVTQAKYIGEILQTLQKQDETLQ 300

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
              A++  D  L       L +    ++I+ G PL     ++                   
Sbjct: 301  DVAVVLGDEQLLIPCLNSLPQEIERLNITMGFPLKDIPLAT------------------- 341

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
                       F   Y+ +  +  +    +   N     +L+ L          +     
Sbjct: 342  ----------TFNNLYILQEHHRNDTFYYKNIINVLSDTNLRPLFQQEDKNLAADIIEYI 391

Query: 508  WQSRLSEEDKELA-VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              + +     E+       H+      L TY  +K       +I +   L       +  
Sbjct: 392  QTNNIIYVSTEVIVARFPKHVQDIAEMLFTYWNDKPKL----AIQNCVTLIRRLKTKLIE 447

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
            D  + L  L +      + +    + +       +    + +   +I  ET+  K E   
Sbjct: 448  DREQHLLALEYLYRFNEVFNQLQHLTKQ-HNYITDIKSLLALYKEIISTETLDFKGEPLQ 506

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYIGQAA 685
             L ++G LE+R+L+F T+IL  +NEG+ P   + N F+   ++   NL T  EK      
Sbjct: 507  GLQLMGMLETRVLDFKTVILSSVNEGILPSGKSNNSFIPFDLKKQFNLPTYKEKDAIYTY 566

Query: 686  HDFEMANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
            H + + +   ++    +   +       SR+L +L      +               T +
Sbjct: 567  HFYRLLHRAENVYLLYNTEADGLNGGERSRFLMQLETYNMPNHTLTQNVVIPTVPKITHQ 626

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
            +    K    +        +   + +S S +   I +P   Y ++IL ++     ++   
Sbjct: 627  MQEVQK----EASMQKRMKDIANKGFSPSALTSYIRNPIDFYYQKILGINEYEAVEETVA 682

Query: 805  RTDRGTLFHNIITELIKKRINK--NTPEINHLMKQI-------IDSHFEKENLPPHIDII 855
                GT+ H+ +  L K    K   T +I  + K +           + + N+    ++I
Sbjct: 683  ANTLGTVVHDTLELLYKPFEGKIIATEDIKAMFKNVEPLVVENFKKTYGEGNIHRGKNLI 742

Query: 856  WRHLFHKISHSFLEHEEKIQSSI---EKIFVNI--PAKMAIESIGIH--LTGFADRIDLL 908
              ++  +   +FL+ E +   S      + +     AK+ I  +     + G  DR+D L
Sbjct: 743  IFNVAKRYVTNFLQQELQTLKSGKTLRILQIEQTLKAKVDIPELDFPVYIGGKVDRVDEL 802

Query: 909  KSGFVDITDYKTGDNPKKETAQK------------LIDPQLSLEAAAL-KAGSFSQIDCR 955
              G + I DYKTG    +   +                 Q+   A  + +  +F Q    
Sbjct: 803  -DGVMRIIDYKTGKV-SQGDVEIVDWDLLTQDYKFSKSFQVLAYAYMIYQKQAFQQ--ET 858

Query: 956  KVANLFYIRLKQKF-----KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
            +   + +  L+  F     K    + +K +    E  +  +  L +++  + N E PF 
Sbjct: 859  EAGIISFKNLQSGFLKFGTKDSARSRNKNQLITAETLDDFVVELKQLILEICNMEIPFT 917


>gi|271969569|ref|YP_003343765.1| superfamily I DNA and RNA helicase-like protein [Streptosporangium
            roseum DSM 43021]
 gi|270512744|gb|ACZ91022.1| Superfamily I DNA and RNA helicase-like protein [Streptosporangium
            roseum DSM 43021]
          Length = 1051

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 125/1035 (12%), Positives = 275/1035 (26%), Gaps = 110/1035 (10%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
            +  T+V+      ++P     V +   +++A +ELR   I    +++T  P+  +     
Sbjct: 31   IVETVVDRIERRGVDPE---RVLVLTFSRKAAEELRER-ITGRMRRTTRTPLALTFHSYA 86

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                  + +L+  + P      RLL     +L  R  L   ++D  P  P          
Sbjct: 87   YALLRREAVLAGGVPP------RLLTGPEQLLEVRRLLHGELEDGAPHWP-DDMREALKT 139

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE--LN 203
               A+ L D +          ++L  L        W+ A  F       +   +      
Sbjct: 140  RGFAQELRDFLSRAAERGLDGDELVELGRLHGRADWVAAGRFADRYQSRFDLDMEPVLDY 199

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
            +         L   E     +     +++     + PA   L+  +A    G  ++   D
Sbjct: 200  SDLIRTAAGLLADPEVRLRERAAYDVVLVDEYQDTDPAQEFLLQQLAG--EGRDLIAVGD 257

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +     +       +   +          +  L + R     L   S  +  R
Sbjct: 258  PDQSIYGFRGADVRGIMRFPESFPGAD----GENAPVIALRVCRRSGSELLRASRRVAAR 313

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
                                   +          DV ++  D   +EA  +A  LR +  
Sbjct: 314  ------------LPATPGGAAHRDLRALPDAEPGDVRVLVTDGATQEAAVVADTLRRAHL 361

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGI-----PLSTTLHSSILTSLLNAIF 438
             +    + +      A R    L R  +   +   +     PL        L  L+    
Sbjct: 362  LDGVPWSRMAVLVRSATRQVPLLRRALVTAGVPVVVGGGELPLFQEPGVRPLIRLIQVAL 421

Query: 439  KLNDFMAIAT--LVKHPLAKFGF---PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                        L+   L             +      E +     ++  D    + +  
Sbjct: 422  HPETLDEAMAEELLTGALGGTDMVGVRRLRRALRIAEHEAMTHPDERDMVDHSGERDVAG 481

Query: 494  DRI--ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
             R                 R+       A  L   +      +    T ++        +
Sbjct: 482  PRSSGELLVAALKDVRELVRVEPHVALPAERLAKLVSGAAEAVRQGGTAEDVLWTVWQAT 541

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
               +       +          +L         ++ F   +          +   D++ +
Sbjct: 542  GLAEKWTGVSVSGGFRGTMADRDLDAVVALFDHAARFVDRLPHAGVE----VFVDDLVAQ 597

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
             I G+++  +   + ++ IL    S+ L +D +++ G+ EG WP    +   LS      
Sbjct: 598  EIPGDSLADRAPDTDSVRILTAHRSKGLEWDVVVVAGVQEGAWPDLRLRGSILSTDDMVA 657

Query: 672  LNLKTAEKY-------------IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
                +  +                +    +  A   R  +   ++   +     SR+L  
Sbjct: 658  RAEGSEHENPAAVSAALASQLLAEERRLFYVAATRARTRLIVTAVGGEDSEERPSRFLTE 717

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR---------------------- 756
            L+     +   + + R          L      P                          
Sbjct: 718  LVPGAAEETAVDERSRWLSMSALVADLRSAVSDPTRPASLRRAAAEHLARLAAEGVSGAH 777

Query: 757  -----------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++              +              
Sbjct: 778  PNEWYALTPISDDRPLSWPDDVVRISPSAVENFTKCGLRWLLETSVGASGTDA------A 831

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
               GT+ H +    +       + +        I    +   +  +     R +  ++  
Sbjct: 832  RGLGTVIHALA---VLAATGMPSEDTLGKRLDEIWHELDFGGVWYNRKQ--RKVAEQMIS 886

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-P 924
             F+   +   +  E + +       + S G+ + G  DR++    G   I D KTG N P
Sbjct: 887  KFVRWHQD--NPRELVGLEEAFTAMV-SEGVQIKGRVDRVERDAEGRAVIIDIKTGKNGP 943

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
            K    ++   PQL +   A   G+F +    +      +++             +   A+
Sbjct: 944  KDAEIERH--PQLGVYQLAALLGAFQRHGMTEPGGAALVQVGDAAGKKDAKEQAQPPLAE 1001

Query: 985  ELSEKSLKNLIEIVT 999
            +      +++++ V 
Sbjct: 1002 DADPGWARDMVDTVA 1016


>gi|260642335|ref|ZP_05415442.2| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
 gi|260622483|gb|EEX45354.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
          Length = 957

 Score =  270 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 140/1072 (13%), Positives = 306/1072 (28%), Gaps = 176/1072 (16%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
             PF + +   L      +           L+   +  P KRA         E +  +   
Sbjct: 2    QPFLQLVAHDLYTKIGND-----------LSRTVLVFPNKRANLFFNEYLAEESD-QPIW 49

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
             P   S+ D++++           L            +  L  +++ +            
Sbjct: 50   SPAAMSISDLLQKLSVQKAGDPIRL------------VCELYKVFKEET----------- 86

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
                  +  +  +  + L    D ++      + L +                LK     
Sbjct: 87   --ESRETLDDFYFWGELLISDFDDVDKNMVDADKLFS------------NLQDLKNLMDD 132

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI-PATARLMSTVANHP 253
            + E L E         +        E   +  +  I +    G I       ++ +    
Sbjct: 133  Y-EFLDEEQ---EEAIRQFFQNFSIERRTELKEKFISLWDKLGIIYHRYREKLAELGIAY 188

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
             G +    ++          +                       +    L    + +   
Sbjct: 189  EGMLYRNVIEQ---------LDTDRLKYDKYVFVGFNVLNKVEKEFFQKLQKAGKAMFYW 239

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
                      S   +  F+  +  D    + L     +I +    +  I A  E  +A  
Sbjct: 240  DYDLFYTQRISKHEAGEFIKRNLID--FPNELPESYFDIFRKPKKIRYISASTENAQARF 297

Query: 374  IAIALRMSLDENKKKS-----ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            +   ++ +     +       A++  +  L   V   + +   N++I+ G PL+ T   S
Sbjct: 298  LPEWVKATQTHTTQIVSEKENAIVLCNEALLLPVLHSIPQDVQNVNITMGFPLAQTPVYS 357

Query: 429  ILTSLLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
             + + +               + A++ ++KHP  +              LE    + N+ 
Sbjct: 358  FINAAMELQTNGYRPDTGRFTYEAVSKILKHPYTRQLSD------HATRLERELTKTNRF 411

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                 +LK                      +    +     L D++L+ I  +      +
Sbjct: 412  YPLPSELKK----------------DDFLTILFTPQSNIRELCDYLLRLIKSISILYRKE 455

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKA 600
                                             L+ E   ++   +           +  
Sbjct: 456  GEY------------------------DDIFNQLYRESIFQSHLKINRLYSLIESGELSV 491

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                   +IT+++    +    E +  L I+G LE+R L+F  LI+  LNEG  PK   +
Sbjct: 492  RTDTLKRLITKVLTASNIPFHGEPAIGLQIMGVLETRNLDFRNLIMLSLNEGQLPKAGGE 551

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQR 718
            + F+   ++    + T E      A+ F        ++    +   +       SR++ +
Sbjct: 552  SSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQ 611

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            LLV G  +      + GQ   +        T +   +  + +   + +    S S +   
Sbjct: 612  LLVEGPHEITREYLEAGQSPQNTLEIQIEKTPEILRRLYRAYDTAQPESVILSPSALNTY 671

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT----PEINHL 834
            ++     Y R +  L        + D    GT+FH                    ++  L
Sbjct: 672  LDCRLRFYYRYVAGLKTPDEVSAEIDSALFGTIFHLSAQLAYTDLTANGKMIQREDLERL 731

Query: 835  MKQI------IDSHFEKENLPPH---------IDIIWRHLFHKISHSFLEHEEKIQSSIE 879
            ++        +D  F++E              + +I   +        L ++ +  +  E
Sbjct: 732  LRDEIKLQGYVDQAFKQELFKVAPEEKPEYNGVQLINSKVIVSYLKQLLRNDLQ-YTPFE 790

Query: 880  KIFVNIPAK------MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-KETAQKL 932
             + +            A+  + + L G  DR+D  K G + I DYKTG +PK     ++L
Sbjct: 791  MVAMEKKVSEKITIQTALGPLTLRLGGTIDRMD-AKEGTLRIVDYKTGGSPKIPANIEQL 849

Query: 933  IDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
              P         Q  L AA +       +       L YI          +    +    
Sbjct: 850  FTPSETRPNYIFQTFLYAAIMSRKQPLMVAPA----LLYIHRAASESYSPVIEMGEPRKP 905

Query: 984  DELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                       ++  + L  ++  + + ++ F     +  K     ++  + 
Sbjct: 906  KIPVNNFAFFEDEFRERLQALLEEIFDEKELFTQTEDI--KKCAYCDFKAIC 955


>gi|302346509|ref|YP_003814807.1| hypothetical protein HMPREF0659_A6763 [Prevotella melaninogenica ATCC
            25845]
 gi|302150929|gb|ADK97190.1| conserved hypothetical protein [Prevotella melaninogenica ATCC 25845]
          Length = 958

 Score =  270 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 139/1092 (12%), Positives = 289/1092 (26%), Gaps = 219/1092 (20%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +   LL     +           +A + +  P KRA   L      +        P
Sbjct: 4    FLEHVAADLLKKYGND-----------MAHIAVVFPNKRAALFLNQALARLADG-PVWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSY----NLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLY 131
               ++ D   +     +        +L    +       E       W   L     D+ 
Sbjct: 52   AYITISDFFRQHSELTIADPIKSICDLYKSYIEVTGNTNETLDHFYGWGQLLLADFDDID 111

Query: 132  PESP--------LSLPISPANAIWLAKN----LADIIDIIETEEKKWEDLHALKNEKYGM 179
                        +S      +  +L       L          +   E +     E++  
Sbjct: 112  KNMANAEMVFSNISNLKELDDISYLTDEQKVELRRFF---ANFDDDPEGI----RERFIT 164

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
             W      L      + +RL     +        ++    +  ++      +  G     
Sbjct: 165  LWNK----LNDIYNDFKQRLKSQKLAYEGMLYRDVVE---KTKIEAQYECYVFVGFNVLQ 217

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
                                                                 Q    + 
Sbjct: 218  KVE--------------------------------------------------QLLFKRF 227

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            L     +             M   +   +      D       +  +    N+ K   D+
Sbjct: 228  LK----EERASFYWDYDRYYMKPTNEAGNYIRCWLDKFPNALPNDSDELYDNLGK-EKDI 282

Query: 360  ALIEADNEREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAG 418
             +I A  E  +A  I   LR +    + K++A++  D +L + V   +      ++++ G
Sbjct: 283  NIISAPTENLQARYITEWLRENERYKDGKRTAIVLCDEHLLQTVIHCIPDEVETLNVTTG 342

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
             PL  T  +S++T L     +                            ++       R 
Sbjct: 343  YPLQQTPIASMVTQLWALQTEGYSVQE----------------------QSYRLHYVNRV 380

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
             ++ Y       +                 +     E                       
Sbjct: 381  LRHPYGKYLTPKVAEIIERLNSERQFYVKPKEGSIFEYHPS------------------- 421

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                       + +W   T+  +      +   L           L+ L   +I     +
Sbjct: 422  ----DKQNLQVLVNWLAETIRFIGVNGAADKDPLFEESVFRMYTLLTRLSDLMIN--GDL 475

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
             A+ I +  ++T+LI   ++    E +  + ++G LE+R L+FD +++   NEG  PK  
Sbjct: 476  DADKIIFRRLLTQLIAATSIPFHGEPARGVQVMGVLETRNLDFDHVLVLSCNEGNMPKGI 535

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWL 716
                F+  +++    L T +  +   ++ F       + + +  +       T   SR++
Sbjct: 536  DDASFIPHLIRKAYELTTIDNKVSIYSYYFHSLIQRAKDVTFLYNNSTQGSHTGEMSRFI 595

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
             +L+V           + GQ  +          +    ++ +       +   +S + I 
Sbjct: 596  LQLMVEWNHPIHRLTLQAGQEPMH--------CEAEVVEKNEAVLNRLDEISYFSPTAIN 647

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPD-RTDRGTLFHNIITELIKKRINKN-------- 827
              I      Y + I  ++ +     D       G +FH     + +K + +         
Sbjct: 648  TYITCQLKYYFKYIAGINELDEVDVDDVDNRMFGNIFHTAAQLMYEKLLPREVITAKNID 707

Query: 828  -------------TPEINHLMKQIIDSHFEKENLPP-----------HIDIIWRHLFHKI 863
                         +      +  I+D  F  E                + +I R +  K 
Sbjct: 708  YLLKTGKSTQSLTSGNAELTLDDIVDEAFATELFHQQRGVKKHPKLNGLQLINREVIIKY 767

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIG----IHLTGFADRID---LLKS-GFV 913
             H  L  +    + +  I    P    + I   G    I   G  DR+D   +      +
Sbjct: 768  LHQLLRIDR-RSAPLRVIGHEFPVKRSLTINVNGLEKQIETGGRIDRLDEILVDSDSARL 826

Query: 914  DITDYKTG--DNPKKETAQKLID-----------PQLSLEAAALKAGSFSQIDCRKV--A 958
             + DYKTG       ++  ++ D            Q  L +              +    
Sbjct: 827  RVVDYKTGGKAAESLKSVDEMFDSKNLSKKSDYTMQAMLYSLIEAKNDSEHNPNHRAVSP 886

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELS--EKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016
             L +I+         + +  K+   D     E  L+NL E +  + N    F      + 
Sbjct: 887  ALLFIQHAGSEDYTPVLSIDKEEVTDVTVYEEDFLRNLTEKLEEIHNPNIAFA--PTDNT 944

Query: 1017 KSNIQSEYDHLA 1028
             S     Y  + 
Sbjct: 945  DSCQYCPYKQMC 956


>gi|261879279|ref|ZP_06005706.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270334110|gb|EFA44896.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 987

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 141/1103 (12%), Positives = 307/1103 (27%), Gaps = 213/1103 (19%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F + +   +L              P  L+ V I  P KRA   L     E    +    P
Sbjct: 5    FLQHVAKDILAKH-----------PEGLSDVAIVFPNKRASLFLNQALYEE-AGRPLWSP 52

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               ++ D+  +     +              ++L + +L   + +         +  S  
Sbjct: 53   AYITISDLFRQHSEWSVPD------------QILLVFKLYNTFCHVTGSDEPLDHFYSWG 100

Query: 137  SLPI--------SPANAIWLAKNL--------ADIIDIIETEEKKWEDLHALKNEKYGMW 180
             L +        + A+A  L  NL           +   + E  +        N +    
Sbjct: 101  QLLLADFDDLDKNMADADKLFINLEAWQEMKDFSFLSEAQRESLENFFGKMFDNTEMQRR 160

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
            +      L      + + L     +                                   
Sbjct: 161  FNDTWRHLAEIYHCFRQELQTEKMAY---------------------------------- 186

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                L   VA                                          Q    +L 
Sbjct: 187  -EGMLYRQVAETK----------------------HIEFRYKHYIFIGFNLLQKVEQQLF 223

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKS--FLPPDTSDMRNTDILENKIPNI----QK 354
              L  +             ++  S        +L    +++  T I  +   +       
Sbjct: 224  RRLKAEGRAEFYWDYDKYYIHNNSEAGKYISGYLDKFPNELSPTRISGDLSHDAVYDNMS 283

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINI 413
               DV  I A  E  +A  ++  L+     ++  ++A++  + +L   V   L     N+
Sbjct: 284  APKDVTYISAPTENIQARYVSEWLKQGDRIKDGSRTAIVLGNESLLETVIHCLPEEVDNV 343

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKL-------NDFMAIATLVKHPLAKFGFPEKYLSR 466
            +I+ G PL+++  S+++  LLN   +             I  +++HP AK+   +   + 
Sbjct: 344  NITTGYPLASSPVSTLVNVLLNLQLRGRVENTDKYRLKYINQVLRHPYAKYISDD--CAL 401

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
              N L          +    +    + D  A  K +       S                
Sbjct: 402  LLNELNTHKHYFPTRTLLTGEYDEAMADLFADVKEDNGKLPVLSW--------------- 446

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
                I  ++      +    N  + +      T +  +                 +    
Sbjct: 447  ----IAGILKRIGVGSREEKNPLMHESVFRMYTLINRLDDIMIATT---------ENAGL 493

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
             +  I E       +      ++T++I   T+    E    + ++G LE+R L+FD ++L
Sbjct: 494  SYGNIDEESGRQIVSVAILQRLLTQVIQSTTIPFHGEPLLGIQVMGVLETRNLDFDHVLL 553

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRE 705
               NEG  PK+     F+   +++   L T E  +   A+ F         +  T +   
Sbjct: 554  LSCNEGNLPKSVNDASFIPHSLRAGYELTTVENKVAIYAYYFYSLLQRAEDITLTYNNST 613

Query: 706  NNIPT-IASRWLQR--LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
            +       SR++ +  +             + GQ      R+          ++      
Sbjct: 614  DEGQRGEMSRFMLQFMVENADRQHISFKTLQSGQSVTLIRRR--------PIEKNAIIRQ 665

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI-PHFKKDPDRTDRGTLFHNIITELIK 821
                    S S I + +      Y   +  L       + + D    G +FH        
Sbjct: 666  QLDSIDRLSPSAINRYLRCQLQFYYNTVCHLREESNDDEDEIDNVTFGNIFHRSAELTYL 725

Query: 822  KRIN---------------KNTPEINHLMKQIIDSHF------EKENLPPHIDIIWRHLF 860
                               K+   ++  + Q                    +  + + + 
Sbjct: 726  DLSAHYTKPVTSGGIDTFLKDKSILDRHIDQAFREILFKVNDSRFSPQYNGLQRLNKKVV 785

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPA----KMAIES--IGIHLTGFADRIDLLK-SGF- 912
                   L  ++++    + + +           ++     + + G  DR+D ++  G  
Sbjct: 786  RLYLERLLTLDKQLTP-FDILTLEGSFYDNLTFEVQGKQRTLRVGGQIDRLDRIQMDGQP 844

Query: 913  -VDITDYKTGDNPK--KETAQKLIDPQ----------L--SLEAAALKAG--SFSQIDCR 955
             + + DYKTG        T + + +PQ          L   L A  ++ G  +   ++  
Sbjct: 845  VIRVVDYKTGRPLSSLPSTVEDIFEPQYIDTKHTAYYLQAFLYAGIIRHGKEARKSVNPE 904

Query: 956  KV---ANLFYIRLKQKFKIDCIT-------NDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
            ++     LF+IR       +            +  +  D   ++ ++ L  ++  + + +
Sbjct: 905  QLPVSPALFFIRQTASDNYNPTLSFSVGRGKREMIHDIDTRYDEFIQALQNLMGSIFDPD 964

Query: 1006 QPFISHLRLSEKSNIQSEYDHLA 1028
            Q F+          I   Y ++ 
Sbjct: 965  QSFL--PTEDGTRCISCPYKNIC 985


>gi|311746369|ref|ZP_07720154.1| hypothetical protein ALPR1_08178 [Algoriphagus sp. PR1]
 gi|126575254|gb|EAZ79586.1| hypothetical protein ALPR1_08178 [Algoriphagus sp. PR1]
          Length = 954

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 129/1061 (12%), Positives = 289/1061 (27%), Gaps = 161/1061 (15%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F R     +L+  +             L  +T+ +P +RA          +   + T +P
Sbjct: 4    FLRNTAKEILDSGV------------DLQKLTVVLPNRRAGLFFTQHLGSLI-TEPTWMP 50

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR-NKLPDIIKDLYPESP 135
             +K++ ++  +           L         + EL R+      +         + E  
Sbjct: 51   EVKTIEEIFYDLAGNRPADDLTL---------IFELFRVYQELNPDAETFDRFYFWGEMI 101

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
            L         +  A  L   +  I+  E    DL  L + +            ++  ++W
Sbjct: 102  LKDFNDVDQFMANASKLYHHLSEIKELE---SDLSFLNDSQV-----------ELIKQFW 147

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
            +    +         +    +      +         A    S  A + ++         
Sbjct: 148  SSFERQ--------DRDHQEKFLKFWQLLNPLYTSFQASLAVSGLAYSGMLYR------- 192

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
                          +  ++   +    +           +   L+       +       
Sbjct: 193  -------------KVVESLDTITRPEKTHYFIGFNAFTGTEEVLIKHYLTDFDAKIFWDI 239

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
             +  +  R       F       +      +    +I+   + +       +  +A  + 
Sbjct: 240  DTYYLEDRVQEAGLFFRDYQKDKVFGPTFPKETPSHIEDRKASIKTYATPLKTNQANLVG 299

Query: 376  IAL--RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
              L    + +  ++   ++  D  +   V   L      ++++ G P+      S L ++
Sbjct: 300  SILDKIPAGERWEETVVIL-PDEQMLFPVLHTLPEQVDKVNVTMGYPVKNAPVYSFLEAV 358

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            L              L+      F         +   L+       +   D M L    L
Sbjct: 359  LEMQ--RFIKEEDGKLL------FYHTAVKNLLSSIYLKNEQPGFAEELMDEMQL----L 406

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
            ++I    +  H       +  +  +                            N S+  +
Sbjct: 407  NQIHVSADKLHKGGKLYHMIFQKLD----------------------------NQSLFPY 438

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                +  L     +E  +   L+         +   +I      +  N   +I +  ++ 
Sbjct: 439  LAELMEALAERLEEEPLQRSYLYQC---FKQLTRLREIFAGQDTLSINREFFIRLFRQIF 495

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                +  + E    L I+G LESR L+F  +I+  +NE  +P     N  +   ++    
Sbjct: 496  REVKLPFEGEPLQGLQIMGVLESRNLDFKRVIICNMNEDSFPPAAGLNSMIPFNIRKAFG 555

Query: 674  LKTAEKYIGQAAHDFEMAN-GTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNL 731
            L   E+     A+ F         +    +   +       SR++Q++ V  G +  + +
Sbjct: 556  LPVQEQNDSIYAYTFYRLLHSAEEVHMIYTTASDQGKAGEKSRYIQQMGVELGREIAEEV 615

Query: 732  KKRGQCYLDWTRK-LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
                          +    +                  ++S S +   ++     Y + +
Sbjct: 616  IYIPIDQKSPEEITIQKNNEVLGLLDKYLIDEHGRSQTSFSPSALSVFLDCRLKFYLQYL 675

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK---------NTPEINH-----LMK 836
              +       ++ D    G L H  +  L +    +         +  +++       ++
Sbjct: 676  ANIQEKQEVNEEIDAAVFGNLAHLSMEILYQDFAKRKGRTLLEKSDFDDLSKTWVFPAIE 735

Query: 837  QIIDS--HFEKENLPP--HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA-- 890
            + I    H E E          I R +  K  H  L+ ++   +    I +    K    
Sbjct: 736  KAIRQFYHLEDETDTKLNGQMAIARDVLQKYLHQILKVDKDS-APFRLISLEKEKKYTAG 794

Query: 891  IESIG------IHLTGFADRIDLLKSGFVDITDYKTGD-------NPKKETAQK----LI 933
            IE         + L G  DR+D  + G V + DYK+G         P             
Sbjct: 795  IEIETSKGKQIVSLKGIIDRVDEHQ-GSVRLIDYKSGQDNKNFPDVPSLFDRDHKSRNKA 853

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF------KIDCITNDKKKYSADELS 987
              Q        +A + S     K A      +          +        +        
Sbjct: 854  AMQTMFYGLIYQATNPSNKLPLKPAIFNLREMFSDDFNPYLQEKIPYKTGIEVDDYRNYE 913

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            E+    L  ++  + N + PF     L  K      Y  + 
Sbjct: 914  EEYSTGLKTLLGDIYNPDIPFDQTEDL--KKCAYCPYKEIC 952


>gi|288802441|ref|ZP_06407880.1| conserved hypothetical protein [Prevotella melaninogenica D18]
 gi|288334969|gb|EFC73405.1| conserved hypothetical protein [Prevotella melaninogenica D18]
          Length = 958

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 138/1092 (12%), Positives = 287/1092 (26%), Gaps = 219/1092 (20%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +   LL     +           +A + +  P KRA   L      +        P
Sbjct: 4    FLEHVAADLLKKYGND-----------MAHIAVVFPNKRAALFLNQALARLADG-PVWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSY----NLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLY 131
               ++ D   +     +        +L    V       E       W   L     D+ 
Sbjct: 52   AYITISDFFRQHSELTIANPIKSICDLYKSYVEVTGNTNETLDHFYGWGQLLLADFDDID 111

Query: 132  PESPLS--------LPISPANAIWLAKN----LADIIDIIETEEKKWEDLHALKNEKYGM 179
                 +              +  +L       L             ++D      E++  
Sbjct: 112  KNMANTEMVFSNICNLKELDDISYLTDEQKVELRRFF-------ANFDDNSEGIRERFIT 164

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
             W      L      + +RL     +        ++    +  ++      +  G     
Sbjct: 165  LWNK----LNDIYNDFKQRLKSQKLAYEGMLYRDVVE---KTKIEAQYECYVFVGFNVLQ 217

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
                 L          +                +  E    I      +         +L
Sbjct: 218  KVEQLLFKLFLKEEKASFYW-----DYDRYYMKSTNEAGNYIRCWLDKFPNALPNDNDEL 272

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
             D L  +                                                   ++
Sbjct: 273  YDNLGKE--------------------------------------------------KEI 282

Query: 360  ALIEADNEREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAG 418
             +I A  E  +A  I   LR +    + K++A++  D +L + V   +      ++++ G
Sbjct: 283  NIISAPTENLQARYITEWLRENERYKDGKRTAIVLCDEHLLQTVIHCIPDEVETLNVTTG 342

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
             PL  T  +S++T L     +                            ++       R 
Sbjct: 343  YPLQQTPIASMVTQLWALQTEGYSVQE----------------------QSYRLHYVNRV 380

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
             ++ Y       +                 +     E                       
Sbjct: 381  LRHPYGKYLTPKVAEIIERLNSERQFYVKPKEGSIFEYHPS------------------- 421

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                       + +W   T+  +      +   L           L+ L   +I     +
Sbjct: 422  ----DKQNLQVLVNWLAETIRFIGVNGAADKDPLFEESVFRMYTLLTRLSDLMIN--GDL 475

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
             A+ I +  ++T+LI   ++    E +  + ++G LE+R L+FD +++   NEG  PK  
Sbjct: 476  DADKIIFRRLLTQLIAATSIPFHGEPARGVQVMGVLETRNLDFDHVLVLSCNEGNMPKGI 535

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWL 716
                F+  +++    L T +  +   ++ F       + + +  +       T   SR++
Sbjct: 536  DDASFIPHLIRKAYELTTIDNKVSIYSYYFHSLIQRAKDVTFLYNNSTQGSHTGEMSRFI 595

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
             +L+V           + GQ  +          +    ++ +       +   +S + I 
Sbjct: 596  LQLMVEWNHPIHRLTLQAGQEPMH--------CEAEVVEKNEAVLKRLDEISYFSPTAIN 647

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPD-RTDRGTLFHNIITELIKKRINKN-------- 827
              I      Y + I  ++ +     D       G +FH     + +K + +         
Sbjct: 648  TYITCQLKYYFKYIAGINELDEVDVDDVDNRMFGNIFHTAAQLMYEKLLPREVITAKNID 707

Query: 828  -------------TPEINHLMKQIIDSHFEKENLPP-----------HIDIIWRHLFHKI 863
                         +      +  I+D  F  E                + +I R +  K 
Sbjct: 708  YLLKTGKSTQSLTSGNAELTLDDIVDEAFATELFHQQRGVKKHPKLNGLQLINREVIIKY 767

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIG----IHLTGFADRID---LLKS-GFV 913
             H  L  +    + +  I    P    + I   G    I   G  DR+D   +      +
Sbjct: 768  LHQLLRIDR-RSAPLRVIGHEFPVKRSLTINVNGLEKQIETGGRIDRLDEILVDSDSARL 826

Query: 914  DITDYKTG--DNPKKETAQKLID-----------PQLSLEAAALKAGSFSQIDCRKV--A 958
             + DYKTG       ++  ++ D            Q+ L +              +    
Sbjct: 827  RVVDYKTGGKAAESLKSVDEMFDSKNLSKKSDYTMQVMLYSLIEAKNDSEHNPNHRAVSP 886

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELS--EKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016
             L +I+         + +  K+   D     E  L+NL E +  + N    F      + 
Sbjct: 887  ALLFIQHAGSEDYTPVLSIDKEEVTDVTVYEEDFLRNLTEKLEEIHNPNIAFA--PTDNT 944

Query: 1017 KSNIQSEYDHLA 1028
             S     Y  + 
Sbjct: 945  DSCQYCPYKQMC 956


>gi|327314683|ref|YP_004330120.1| hypothetical protein HMPREF9137_2480 [Prevotella denticola F0289]
 gi|326945634|gb|AEA21519.1| conserved hypothetical protein [Prevotella denticola F0289]
          Length = 958

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 143/1097 (13%), Positives = 301/1097 (27%), Gaps = 229/1097 (20%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +   LL     +           ++ V +  P KRA   L      + G      P
Sbjct: 4    FLEYVAQDLLKKYGTD-----------MSDVAVVFPNKRASLFLNQALARMAGH-PLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSY----NLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLY 131
               ++ D   +     +        +L    V     + E       W   L     D+ 
Sbjct: 52   AYVTISDFFRQHSGLTVADPIKSICDLYKTYVEVTGNVGETLDQFYGWGQLLLADFDDID 111

Query: 132  PESPLSLPISPANAIWLAKNLADIID----------IIETEEKKWEDLHALKNEKYGMWW 181
                               NL ++ D           +      ++D      E++   W
Sbjct: 112  K-----NLADARLIFSNISNLRELDDISYLNDEQKAELHRFFANFDDKPEGIRERFITLW 166

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                  L      + E+L     +        +                  AG       
Sbjct: 167  DR----LNDIYNRFREKLRSQELAYEGMLYRDVAEQ---------------AGIQ----- 202

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
                                                 T             Q    ++  
Sbjct: 203  -------------------------------------TRYQHYAFVGFNVLQKVEQRIFK 225

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                + +           M GR+                +     +++ +      +++ 
Sbjct: 226  RFKDEEKADFYWDYDRYYM-GRTNEAGNYIRQWLDRFPNSLPNDNDELYDNLGKEKEISF 284

Query: 362  IEADNEREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            + A  E  +A  I   LR      +   +A++  D +L + V   +      ++I+ G P
Sbjct: 285  VSAPTENLQARYITEWLRKDGRYKDGTHTAIVLCDEHLLQTVIHCIPSEVETLNITTGYP 344

Query: 421  LSTTLHSSILTSL-------LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            L  T  +S++T L        +   +      ++ +++HP  K+  P          LE 
Sbjct: 345  LQQTPIASMVTQLLILQTEGYSVQEQGYRLHHVSRVLRHPYGKYLIPNVS-----EVLEQ 399

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
            ++                                            A  L+++       
Sbjct: 400  LSKDHRFYIPP----------------------------------RAGTLLEYHPS---- 421

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
                           +++DW    +  +      +   L          TL +  S ++ 
Sbjct: 422  ---------DRQHLPALADWLTRNIRIIGVNGAADKDPLFE-ESVFRMFTLLTRLSDLM- 470

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
             G  ++A+ + +  ++T+L+   ++    E +  + ++G LE+R L+FD +++   NEG 
Sbjct: 471  AGGDLEADKVVFRRLLTQLVSSTSIPFHGEPARGVQVMGVLETRNLDFDHVLVLSCNEGN 530

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-I 711
             PK    + F+  +++   +L T +  +   ++ F       + + +  +       T  
Sbjct: 531  MPKGVDDSSFIPHLIRKAYDLTTIDNKVSIYSYYFYSLIQRAKDITFLYNNSTQGSRTGE 590

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
             SR++ +L+V           + GQ      R       +              +   +S
Sbjct: 591  MSRFMLQLMVEWNHPIRRMTLQAGQV---PMRCEAKAVTKDKA-----VLNKLDEISYFS 642

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFK-KDPDRTDRGTLFHNIITELIKKRINKN--- 827
             + I   I+     Y + I +++        D D    G +FH+    + +K + K    
Sbjct: 643  PTAINTYISCHLKYYFKYIAEINENEETDIDDVDNRMFGNIFHSAAQLMYEKLLPKEVIT 702

Query: 828  ------------------TPEINHLMKQIIDSHFEKENLPP-----------HIDIIWRH 858
                                 I   M  ++D  F  E                + +I R 
Sbjct: 703  DKNIDYVLKTGKSAQPFTADGIKSTMDDVVDEAFATELFHQQPGSRRHPRLNGLQLINRE 762

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVN--IPAKMAIESIGIH----LTGFADRIDL----L 908
            +  K  +  L  +      +  I     +   + I    I       G  DR+D      
Sbjct: 763  VIKKYLYQLLRIDRGTAP-LRVIGHEFNVKRTLLINVNRIEKQIETGGRIDRLDEVFVGT 821

Query: 909  KSGFVDITDYKTGD--NPKKETAQKLIDP-----------QLSLEAAALKAGSFSQIDCR 955
            +   + + DYKTG       +  + + DP           Q  L +              
Sbjct: 822  EKARLRVVDYKTGSKTAEPLKNVEAVFDPKNIEKKSDYTMQAMLYSLIESRYDILHNPGH 881

Query: 956  KV--ANLFYIRLKQKFKIDC--ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
            +     L +I+           I + ++        +  L+ L E +  + N + PF   
Sbjct: 882  RPVSPALLFIQHSGGEDYTPVIIMDGEEMTDVTLYEKDFLRKLTETLEEIHNPDVPFAPT 941

Query: 1012 LRLSEKSNIQSEYDHLA 1028
              L  +      Y  + 
Sbjct: 942  DDL--ERCKYCPYRQMC 956


>gi|255036136|ref|YP_003086757.1| hypothetical protein Dfer_2374 [Dyadobacter fermentans DSM 18053]
 gi|254948892|gb|ACT93592.1| hypothetical protein Dfer_2374 [Dyadobacter fermentans DSM 18053]
          Length = 968

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 144/1055 (13%), Positives = 302/1055 (28%), Gaps = 175/1055 (16%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L  V I VPT+RA   L  E    T  +  + P I ++ D VE     ++    +L   
Sbjct: 18   SLDRVQIVVPTRRAAFFLMREMAGET-TEPLMSPGIMAIDDFVESICRLEIEDPVHL--- 73

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                     L  L   +R   PD+  D                +  A  L   +D I+  
Sbjct: 74   ---------LFDLYETFREIDPDVQFD--------------RFMGWASVLLSDLDKIDQY 110

Query: 163  EKKWEDL-HALKNEKYGMWWLLAA-------------------DFLKIASKYWTERLVEL 202
              K + L   L        W  +                    + +    + + +RL+  
Sbjct: 111  LVKTDFLFEYLSEAHALSRWQESLPEGRSLNSEGGSRQYFSLFENIHQVYRSFRQRLLAK 170

Query: 203  NASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
              +        L    A       +   I  AG      +   +++ +       ++   
Sbjct: 171  GKAYRGMAYRELATDIANLSADLPEMERIYFAGFNAFTTSERVIVTALVKAKKAEVLWDS 230

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
               ++         +       S                                     
Sbjct: 231  DRYYMSENTVVEAGKSLREYQRSKEFGE---------------------WNWTGD----- 264

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA----IA 377
                                          +      + L    N   +           
Sbjct: 265  -----------------------------ELLSTEKHITLYGVPNATLQTKVAGELYQRM 295

Query: 378  LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
             R   ++    +A++ AD NL   +   L     +++++ G+ +  +L  +++  +    
Sbjct: 296  KRFEAEDAPVPTAIVLADENLLLPMLYSLDEEVRDLNVTMGLSMRNSLLYTLVDGIFELQ 355

Query: 438  FKLNDFMAIA-TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
              + +  + +  L++ P       +            +        Y+ + L  L   + 
Sbjct: 356  QNVVELRSRSGKLIRIPKFGHKSVD-----------KILNHPFIRHYEHVALTPLEDGQT 404

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
              Q+    +            E  V L D        L T+    N+     S     +L
Sbjct: 405  IIQRTLREITEGNQVFL--SSEELVTLGD-NHPLFQILFTHWQKNNAQQVIRSFYQLIEL 461

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                 ++       +   L++     TL   F + IE  + +          +  LI   
Sbjct: 462  LREVYKDYKNALETEYLYLFY-----TLLKQFEQTIEERAEL-ITLRTLKSFMFELIRQT 515

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
             +    E  S L I+G LE+R L+F+ +I+  +NEGV P+   +N  +       + L T
Sbjct: 516  RIPFSGEPVSNLQIMGMLETRALDFERIIILSVNEGVIPQAKRQNSLIPFDAAQAVGLPT 575

Query: 677  AEKYIGQAAHDFEMAN-GTRHLIYTR-SLRENNIPTIASRWLQRLL-VLGGTDFFDNLKK 733
             +      ++ F         +     S  +       SR+++++   L   +    ++ 
Sbjct: 576  HQHQEAVMSYHFYRLLQRASEVHILYTSTNDAPGGGEKSRFVRQIEYELAQYNPLIRIEN 635

Query: 734  RGQCYLDWTRK-LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
            +   +    R+ L+    +                +    + + + I      Y + I  
Sbjct: 636  KTVVFEAQARQELEEVVHKDDALIAAIRA--YLDGKGIYPTHLNEFIRCSMQFYLKHIAG 693

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITE----LIKKRINKNTPEINHLMKQIIDSHFEKENL 848
            +      +++      GT  H  +            + +  EI  ++++  D  F+    
Sbjct: 694  VKEKEEVEEELGMDKIGTWLHASLERLDLEFFLLDKDPSEEEIVQVLREEFDRLFKGYVT 753

Query: 849  PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES------IGIHLTGFA 902
               ++ I+  +  +   +FL H    +   + +    P    I+         + L G  
Sbjct: 754  NLGLNRIYYQIGEQQILTFLRHHMAQKPRRQILAAEQPLHTRIQLVLQGAFTPVRLGGKI 813

Query: 903  DRIDLLKSGFVDITDYKTGDN----------PKKET--------AQKLIDPQLSLE-AAA 943
            DRI+L + G + + DYKTG            P             +     QL +     
Sbjct: 814  DRIELGEDGILYVMDYKTGSVELTGKQKLADPVAREEVIRADPDRKMGYVRQLWIYEYLM 873

Query: 944  LK----------AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
             +           G+        V + FY     K  I        + +  E  EKS   
Sbjct: 874  YRRMKEENGLKLRGNTYNFGEYAVKSGFYSFRDPKNLIANPLELTDQLAPGEFIEKSEVI 933

Query: 994  LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            L +I+ ++ + + PF         +    ++  + 
Sbjct: 934  LTDILNVMLDPDVPF--RKTDDLTTCKFCDFTGIC 966


>gi|296270933|ref|YP_003653565.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
 gi|296093720|gb|ADG89672.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
          Length = 1074

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 131/1052 (12%), Positives = 282/1052 (26%), Gaps = 108/1052 (10%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +     ++ A+++         +         + +   +++A +ELR         ++
Sbjct: 43   PGTGKTTTIVEAVVHRVERRGIAPE--------RILVLTFSRKAAEELRERITARLQ-RT 93

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLY 131
            T  P+  +             +L     P + +  +RLLE+ RL+            +  
Sbjct: 94   TRSPLAFTFHGYAYALLRRAAVLRGEPPPRLLTAPERLLEIRRLLQG--------ELEDG 145

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                 +           A+ L D +          + L  L  E+    W  A  F    
Sbjct: 146  ARHWPAEMRELLKTRGFAQELLDFLSRAAERGLDGDALVRLGRERGRPDWEAAGRFFNRY 205

Query: 192  SKYWTERLVELNASSPVGYQIA---LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
               +    V      P   + A   L    A    +     +++     + PA   L+  
Sbjct: 206  HDRFDVDPV-PTIDYPELIRTAAGLLRDEAARRRERDAYDAVLVDEYQDTDPAQELLLQQ 264

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +A   +G  ++   D       +      +                 +  L         
Sbjct: 265  LAG--DGRELIVVGDPDQSIYGFRGADPGAIMRFPERFRTRDGRPAPVVAL--------R 314

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
            + +R G        R      +   P  +   +     + +P       +V ++ A +  
Sbjct: 315  ECRRFGEALLAASRRVAARLPAAPAPTVAPAGDPGGHRDLVPADGLEPGEVRVLIAGSAS 374

Query: 369  EEAISIAIALRMSLD----ENKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLST 423
            +EA  +A  LR +        ++ + L+         ++  L+  G+ + ++    PL  
Sbjct: 375  QEAAVVADVLRRAHLIDGVPWRRMAVLVRTAVRQVPLLRRALSAAGVPVAVAGDELPLVQ 434

Query: 424  TLHSSILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
               +  L +LL         D      L+  PL           R               
Sbjct: 435  EPGARPLITLLRVAVNPAALDIGTAEELLTGPLGGTDVIGVRRLRRALRAAEQEAAAAAA 494

Query: 482  SYDIMDLKSLV-LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
              D                      P   S +       A  +   +      +  ++  
Sbjct: 495  EADGQATLPFTPRSSDELLIAALRDPRELSGVEPHIAAPAERVARLLAIAREGVRRHRPA 554

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
            ++        S   +              +   +L         ++ F+  +        
Sbjct: 555  EDVLWDIWQASGLAERWTAESLAGGTRGAQADRDLDGVVALFDHAARFTDRLPKAGVE-- 612

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
              +   D++ R I G+T+     +   + IL    ++ L +D +++ G+ EG+WP    +
Sbjct: 613  --VFLDDLLHREIAGDTLAEAAPEGDAVRILTAHRAKGLEWDVVVVAGVQEGIWPDLRLR 670

Query: 661  NPFL-------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
               L                 ++     T+     +    +      R  +   ++   +
Sbjct: 671  GSLLGVDELVELTDRSMPEGDRAAAAALTSRLLDEERRLFYVAVTRARRRLVVTAVGGAD 730

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP---------- 757
                 SR+L  LL  G      + + R          L      P    P          
Sbjct: 731  TEERPSRFLTELLPAGAEPAAVDDRMRWLSLPALVADLRAAVCDPKRPEPVRRAAAAHLA 790

Query: 758  -----------------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                                                S S +++             +   
Sbjct: 791  RLARAGVPGAAPGEWYALTELSDDRPLTWPDGAVRVSPSAVERFTECALRWLLETAVGTG 850

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                          G + H I           +  ++   +  + D  F+      +   
Sbjct: 851  NGGP------NQHVGVVVHAIA---ALAAEGGDETDLVRRLDDVWDR-FDFGGAWFNRKQ 900

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914
                +   +   F   + +    +  + V  P    +   G+ +TG  DR++  + G   
Sbjct: 901  REAAV--GMIERFARWQRERVREL--VAVEEPFTARV-GPGVLITGRVDRLERDRQGRPV 955

Query: 915  ITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
            I D KTG   PK +   +   PQL +   A   G+F +    +      +    K     
Sbjct: 956  IVDIKTGSGKPKNDEIDRH--PQLGVYQLAALLGAFERHGLARSPGGASLLHVGKAAERG 1013

Query: 974  ITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
                 ++  AD+      + L+  V     G 
Sbjct: 1014 AVEQTQRALADDPDPGWAERLVTTVARGMAGS 1045


>gi|284033230|ref|YP_003383161.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
 gi|283812523|gb|ADB34362.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
          Length = 1076

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 123/1038 (11%), Positives = 264/1038 (25%), Gaps = 111/1038 (10%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +     ++ A+++         D         V +    ++A  ELR       G+ +
Sbjct: 50   PGTGKTTTLVEAVVDRVANRGLSAD--------QVLVLTFGRKAATELRDRITTRLGRTT 101

Query: 73   TILPIIKSLGDVVEEKFT-ADLLLSYNLNPPVS-NIQRLLELARLILIWRNKLPDIIKDL 130
              +P + +                ++++   +    ++ L L+ ++           +++
Sbjct: 102  RSMPSM-TFHSFCYALLRRFTPADAFDVPLRLPSGPEQSLRLSEVL--------GGSREV 152

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                                 +  +I          EDL A+        W+   DF + 
Sbjct: 153  GVVHWPRSLHPALKTRGFTDEVQAVIGKARQLGLDPEDLSAIGQSASRPEWVAVGDFFEE 212

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
              +      V   +       I   + E +  ++     + +     + P   +L+  +A
Sbjct: 213  YLQILDHEQVLDYSELIHRAVILAQQPEVQAKLREEFKVVFVDEYQDTDPGQTKLLQAIA 272

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                  +V+   D       +     +     +      T    +   L       R   
Sbjct: 273  GDGRDLVVV--GDPDQSIYTFRGADVRGLLRFTEEFPTVTGEPAAQIALAT----TRRFG 326

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
              L  VS  +  R  V                                V          E
Sbjct: 327  TTLLRVSRNVVNRLGVPGTLDRET------FERFRNPDASGCVFGPGKVEANLYSTSGAE 380

Query: 371  AISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTL 425
               IA  LR +  +        + L+ +       ++  L   GI +D++    PLS   
Sbjct: 381  LEHIADLLRRAHVQDGVAWHDMAVLVRSGSRSIPPLRRALAAAGIPVDVAGDELPLSREP 440

Query: 426  HSSILTSLLNAIFKLNDF--MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                +   L A+          +  L   PL      +                G +   
Sbjct: 441  AVRPMLLALRAVADPATLTVDVVRALALSPLGAMDAGQLRRLARVLRKRDREAAGGQRLP 500

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
               D            +     P      +   +   V L + +L+    L         
Sbjct: 501  RSSD---------ELLREALMEPLLLDEQASPAEARFVALGERLLKARNILTAGAAPDEV 551

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                 S S W +       +          +L         +       E     K  + 
Sbjct: 552  MWSLWSESPWLRRLRGQANSGGEVARAANRDLDSLCALFDAAG----RAEEQVGFKGVSA 607

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
               ++ +  I  +       + + + ++    S+ L +  +++  + EG WP    +   
Sbjct: 608  FLSELESLEIAADNRYDATYRENGVQLMTAHRSKGLQWRLVVVASVQEGQWPDLRRRGSL 667

Query: 664  LSRVMQSDLNL---KTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQR 718
            L         L    +A   + +    F +A       LI T            SR L  
Sbjct: 668  LEPDRLGPDGLVEPLSAGALLAEERRLFYVAITRARERLIVTAVQAPEADGDQPSRLLAE 727

Query: 719  L-------------------------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
            L                          VL        LK+     L    +       P 
Sbjct: 728  LDIPVKLVAGRPRRPLSLPGLVADLRCVLADPASSAALKRVAADKLAQLAEATDERGYPL 787

Query: 754  YKRPKPFPPLEAQPR--------------TYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                 P      + R                + S +  +++ P   + +R    +     
Sbjct: 788  VPTADPDRWWGVRERTKSERPIAVPDQPVPLTGSALTTIVDCPLRWFLQRRAGGETPST- 846

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
                     G + H +   +    +  +  E+N  + + + +  E E+         R  
Sbjct: 847  ----SAIGFGMVLHTLADAVATGTLPPDADELNGWLDK-VWTQLEFESAWISDR--ERVE 899

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG---IHLTGFADRIDLLKSGFVDIT 916
              +    F+   +        I   +   + +       + + G  DR++    G + + 
Sbjct: 900  AEQALRRFVAWHQGR-PDRRMIGSEVEFSVLLPDADHPAVQVKGRMDRVEQDADGKIRVI 958

Query: 917  DYKTGD-NPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
            D KTG   P K    + +  QL++   A          +  +      ++L+        
Sbjct: 959  DLKTGRTAPTKPAVARHV--QLAIYQRAIASRQLKLLGEDAESGGAELVQLRHDDSGLPK 1016

Query: 975  TNDKKKYSADELSEKSLK 992
               +      E     L 
Sbjct: 1017 VQGQAPLEPGENGRTWLD 1034


>gi|284036574|ref|YP_003386504.1| hypothetical protein Slin_1658 [Spirosoma linguale DSM 74]
 gi|283815867|gb|ADB37705.1| hypothetical protein Slin_1658 [Spirosoma linguale DSM 74]
          Length = 1039

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 151/1093 (13%), Positives = 313/1093 (28%), Gaps = 180/1093 (16%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L  V + +PT+RA+     E   ++  +  + P   ++ D + +     L+ S +L   
Sbjct: 18   SLNDVWVILPTRRAVSTFLDELAALSD-RPFLAPHALAVDDFITQAAGVQLIDSVSL--- 73

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                     L  L  +++   P               +     I  A  L    D I+  
Sbjct: 74   ---------LFELYDVFKEIDP--------------LVEFEQFIGWASILLSDFDRIDQY 110

Query: 163  EKKWEDL-HALKNEKYGMWWL--------------------LAADFLKIASKYWTERLVE 201
                 +L   L   K    W                        + +  A     +RL E
Sbjct: 111  LVNPHELFSYLTAAKALERWQVDMPSSAKPIVETPGTTRYFKLFENIHTAYHALHQRLNE 170

Query: 202  LNASSPVGYQIALMRAEAEH-LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
               +        L +              +   G      A   ++  + +    A ++ 
Sbjct: 171  QRLAYRGMAYRLLAQQVEPLIRDNLAYERVYFVGFNALSKAEEHIIRVLVDAKK-AELIW 229

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              D +          E       +   +S      LA+L + L    ++++ +G  +   
Sbjct: 230  DADLYYMNDRRQEAGEFLRRYKDNGWLFSRQNHADLAQLSNNLLGSEKNIRVVGVPN--- 286

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
                                 T +        Q+  S V                   R 
Sbjct: 287  -----------------ASMQTKVAGKIYSEWQRADSAV------------------PRD 311

Query: 381  SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK- 439
            +   + K  A++ AD  L   V   L     +++++ G+ L ++L  +++ +L       
Sbjct: 312  AATPSPKT-AIVLADETLLVPVLYALDENVTDLNVTMGLSLRSSLLFTLVDTLFEMQRTV 370

Query: 440  --------------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                                +  L+ HP  K     + L    + L    +   +  +  
Sbjct: 371  HEFRTKDGRDLKIPKFHHRHVVKLLNHPFLKQYERIRGLMWPGDVLSTGEILPPEPLFQW 430

Query: 486  MDLK---------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
            +  +         +        Q +      ++   +EE  +      D I   +  +  
Sbjct: 431  IAKEIVKNQRVYLTERDMLELGQDDPLVRVLFRRWPNEEPMKAIRTFYDLIE-LLRDVYR 489

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP------NLWFEEEGKTLS---SL 587
               +              K     L                       + G  +    + 
Sbjct: 490  TSQDAIEIEYLYLFFTLLKQLEATLDRQGEGAQGAGRGVPVPKARNRGQGGTAILDTGAP 549

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
               +                 +  LI   ++    E  S L I+G LE+R L+FD +I+ 
Sbjct: 550  VPMLHVHEPSAAVTVRSLKQFLYELIRQTSIPFTSEGKSQLQIMGMLETRALDFDRVIIL 609

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSD--LNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLR 704
             +NEG+ P++   N  +   + +D  + L T  +     A+ F         ++   +  
Sbjct: 610  SVNEGILPQSRKLNSLIPFDIAADENIKLPTYSEQEAVMAYHFYRLLQRASEVVLLYTTS 669

Query: 705  EN---NIPTIASRWLQRLLVLG-----GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
             +   N     SR++++L         G         R     +           P  + 
Sbjct: 670  TDAYGNSKGEPSRFIRQLEHELVPRSNGLVRISYPTVRFGRTSEKKETSLTELSVPKTES 729

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
             +         +    S + Q ++     Y  RI+ +      ++     + G+  H ++
Sbjct: 730  VRDGLINLLITKGLYPSYLNQFVSCSMRFYFSRIVNISEEEDIEEKMGAAEFGSWLHKVM 789

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKEN----LPPHIDIIWRHLFHKISHSFLEHEE 872
              L  +   K  P    ++K +++  F   N    +   ++++   L  K+   F + ++
Sbjct: 790  ERLDLEYRLKALPIDESIIKMLLEEEFASTNKGRVIESGMNLLLYDLAQKLMLDF-QRQQ 848

Query: 873  KIQSSIEKIFVNIPAK----MAIESIG---IHLTGFADRIDLLKSGFVDITDYKTGDN-- 923
                 +  I      +    ++IE  G   + + G  DRI+ L    + I DYKTG    
Sbjct: 849  NALPGLTVIGTEQTLETYLTVSIEGRGAVRVRIAGKVDRIERLGD-QIRIVDYKTGKVDL 907

Query: 924  --PKKETA----------QKLIDPQLSLEAAAL-----KAGSFS---------QIDCRKV 957
                 +                  QL L          + G              +   V
Sbjct: 908  SEKTPKDLSDRLLNDGGDDAGKMRQLWLYRYLALKNISEYGGLPRDRAKRDIFNAEGMPV 967

Query: 958  ANLFYIR--LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015
               FY    +   FK + +       S  +  E S   L +++  L + EQPF       
Sbjct: 968  EAGFYSFRDVNGGFKTNPVRFGDND-SPGQYIEDSEDLLRQLIQQLLDPEQPF--RKTDQ 1024

Query: 1016 EKSNIQSEYDHLA 1028
             ++    +Y  + 
Sbjct: 1025 IETCQFCDYKGIC 1037


>gi|148284069|ref|YP_001248159.1| hypothetical protein OTBS_0148 [Orientia tsutsugamushi str. Boryong]
 gi|146739508|emb|CAM79214.1| hypothetical protein OTBS_0148 [Orientia tsutsugamushi str. Boryong]
          Length = 942

 Score =  264 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 157/997 (15%), Positives = 336/997 (33%), Gaps = 92/997 (9%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L  V + +P  +  QEL+   +    K++ +LP + +L   +     A           
Sbjct: 27   SLDKVKVILPYSQQCQELKKIIMLTAQKEAMLLPDVLTLKQFITSFIAASNYS------- 79

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                   L +   +  +     + +     +      I   +A+ L+  L  +   +E++
Sbjct: 80   -------LSICCQLSSYEQ---EAVLSKIIQQHNQQQIRLGDALKLSGKLLHLFQQLESQ 129

Query: 163  EKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
            +     L    ++     +W     FL +A   W++     +  S       L      +
Sbjct: 130  QINLTQLKDFVDQMDSSEYWQNTYKFLSLAYIEWSKLYSNSSYDSKSDIFSQLQDLLKSN 189

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
            L       +I+AG   +      +   V +   G ++ P                     
Sbjct: 190  LSS---NIVILAGLLPTSKLELIIFKEVLSLEFGNVIFP---------------PIYLEE 231

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
               +   S++  Y     +   +I  +DV  L              +K     +  D+  
Sbjct: 232  LCYSVKNSSNTLYDFQYFVKSCNISLDDVTYL-----AKEIALPTKNKPIQLSEFLDLPK 286

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNL 398
             +++ +          D+  ++ +++ +EA  +A  +   L   +    K  ++T   + 
Sbjct: 287  LNLVASDTKFNSDIPIDIEYVKVNSQYDEAKLVAAMIHNYLIKANAKHNKILVVTTTSSF 346

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
               + + L+++ IN      + +   L  + +  L + +           L+K PL    
Sbjct: 347  TTLLTMHLSKYQINYANLTNVDIKQLLEINFILVLADLVSSNFSISKFINLIKTPLLTSS 406

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                 KN +   +LK ++LD                    +D  
Sbjct: 407  SS-----------NKFENLILKNKFQQSELKQILLDL----------------TISKDDS 439

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                    IL  +  L  Y       C  L            +  +   E      +W  
Sbjct: 440  ELQKWATFILSALDNLWIYYNCNTILCDQL-----------IIDLLQAAEKLTEGKIWQF 488

Query: 579  EEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            +  K +S +  ++I         +  ++ +++T L+       + + ++ + I G   + 
Sbjct: 489  QFSKRISDVLKEVIHIAKQFGNIDIRDFSNVLTELVTMIKFNYEHDYNANVVITGADSAI 548

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            LL+ D +I+   N   WP N+ +NP+L++ + S L L     +  +  +         H+
Sbjct: 549  LLSADYIIIPEFNNDHWPGNSIQNPWLNQAIYSKLGLIERNAHYDRKQYILYTILQKAHV 608

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD-WTRKLDYTTKQPHYKR 756
              T S    +  T  S+++ +L +L   +    ++                         
Sbjct: 609  SLTNSQFTASGKTNDSQFILKLQLLAFKNPLIRIRVNDLKLQHNQNYTSVDNKSTTFQIS 668

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                       +T S ++I+ LI +PY  YA+ IL+L  +        +   G   H +I
Sbjct: 669  SGMLLSSADIVKTISATDIEMLIRNPYGFYAKNILRLKPVILNDDQLTQAKFGDFIHTVI 728

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
                    +    ++ +    I     +  N      ++W    H+++  F+  + + ++
Sbjct: 729  HRYTICYKDMEESKLINYFIDIGKQLIDCYNCSSFAKMVWLTKLHQLAEEFVRFDMERRN 788

Query: 877  SIEKIFVNIPAKMAIESIGIHLT--GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
               KIF     ++++      L     ADRI+  ++G   I D+KTG  P K+  Q  I 
Sbjct: 789  EGFKIFSEQLGQISLNINNHALNIMAIADRIEYSQNGECYIIDFKTGTVPNKKEVQHGIA 848

Query: 935  PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
             QL +E+  L  G F  +       + YI++        +    +     E+ +K    L
Sbjct: 849  TQLIIESIILYKGGFKDLPTIMPNKIIYIKITS---TKPLLEFTEITVDQEMLDKHELGL 905

Query: 995  IEIVTLLQ-NGEQPFISHLRLSEKSNIQSEYDHLARV 1030
            +E++     +G   F S +   + +   + Y HLAR 
Sbjct: 906  VELLQYYIKDGGVFFPSPVD--KLAPKYNNYKHLARY 940


>gi|126662604|ref|ZP_01733603.1| hypothetical protein FBBAL38_04595 [Flavobacteria bacterium BAL38]
 gi|126625983|gb|EAZ96672.1| hypothetical protein FBBAL38_04595 [Flavobacteria bacterium BAL38]
          Length = 925

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 138/1043 (13%), Positives = 309/1043 (29%), Gaps = 172/1043 (16%)

Query: 14   SSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST 73
            S+ F  ++   +L+ + +E           L++  I +P KRA   L     E     ++
Sbjct: 3    STTFLDKLSQTILSQSDIE-----------LSNCLIVLPNKRAKVFLLESLKERI-NSTS 50

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE 133
              P I S+ D +++               +  I+ L E   + L    K      + +  
Sbjct: 51   FAPSIISIEDFIKDISGLR---------TIDPIELLFEFYEVYLSVTEKAKQQTFEEFAT 101

Query: 134  SPLSLPISPA--NAIWLAK----NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
               +        +   L      +    I+ ++    +  +   L  + +  +W      
Sbjct: 102  WAKTAIQDFNEIDRYLLDPNHVFSYLKDIEALKRWNLEPSNTTKL-IDTHIEFWAK---- 156

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            L +  + +   L++             ++                A  T +I        
Sbjct: 157  LPLYYESFYNHLLQKGIGYQGLLYREAVKNL--------------AAFTATITNQIY--- 199

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
                                                           +  K+   L  + 
Sbjct: 200  --------------------------------------FAGFNALNQAEEKIFKHLANEN 221

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            +           +                      +     + N      ++ +I     
Sbjct: 222  KAKIYWDIDEVFLNDSYHDAGLFIRKFKKEWKPFVNQDFEWVVNHFSEEKNIEIIGTPKS 281

Query: 368  REEAISIAIALR--MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
              +A  +   +    + + + +K+A++  D NL   V   L      ++I+ G P     
Sbjct: 282  IGQAKIVGTIVEKIQAKNPHLEKTAIVLGDENLLLTVLYGLPETVDALNITMGYPSKNNP 341

Query: 426  HSSILTSLLNAIFKL---------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
               +++ L                  +  +  ++ HPL +       +            
Sbjct: 342  AQLLISKLFKMHSNAKQRNEMSYTFYYKEVLDVLNHPLVEPYCKVNDVVNVIQNNNFTFF 401

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
               K      +                    + +  ++  + L     D I   +  L  
Sbjct: 402  SNQKLFSLYDE-------------------KYPNSENKFFQLLFTRWDDAISDILANLNA 442

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                                 +T    +  D+  +     F        +  +   ET +
Sbjct: 443  I-------------------LLTIKSYLSNDDDEEKVTKAFVYSVFKTINKLTNYHETYN 483

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             I+ +      I  ++ID   V  + E  S L ++G LESR+L+F+ +I+  +NEG +P 
Sbjct: 484  QIE-SLPSLQAIYKQIIDLAEVSFEGEPLSGLQVMGVLESRVLDFENVIITSVNEGKFPA 542

Query: 657  NTAKNPFLSRVMQSDLNLKTA-EKYIGQAAHDFEMANGTRHLIYTRSLRENN-IPTIASR 714
              ++N F+   ++ +L L T  EK      H + +    +++    +           SR
Sbjct: 543  GKSQNSFIPYDVKKELGLPTYKEKDAIYCYHFYHLLLRAKNVWLLYNTDNEGIDAGEKSR 602

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            ++ +L +                  +           P   +        A  + +S S 
Sbjct: 603  FITQLEIEKQPKHTITSTIYNAVLPEKA---YEPVTIPKTDKILTRLQEIASEKGFSPSS 659

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE---- 830
            +   I +P   Y +RIL+++     +++      GT+ HN + EL    +N+        
Sbjct: 660  LTNYIRNPLQFYMQRILRINEAEDVEENIAANTLGTIIHNALEELYTPYLNQFLALHHIE 719

Query: 831  -----INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE---KIQSSIEKIF 882
                 I+ ++ +     +++  +    +++   +  +  ++FL+ E+   +   +I+ + 
Sbjct: 720  AMETKIDEVILKHFKEIYKEGEITKGKNLLAFEVAKRNVYNFLQVEKKDIEAGQAIKVLL 779

Query: 883  VNIPAKMAIE----SIGIHLTGFADRIDLLKSGFVDITDYKTGDN--PKKE--------- 927
            +       IE       I + G  DRI+   +G + I DYKTG       +         
Sbjct: 780  LEASLSCEIEVKSFPFPIKIAGKVDRIEER-NGAIRIIDYKTGKVDGNSLKVIDFTDLTS 838

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA--DE 985
              +     QL   A   +     +        + +  +K  F    +   K+        
Sbjct: 839  DIKNEKIIQLLCYALMFENHELKKNKEVSAGIVSFKNMKSGFLPFGLGKGKEAEIVVSTN 898

Query: 986  LSEKSLKNLIEIVTLLQNGEQPF 1008
              E     L  ++  + N E PF
Sbjct: 899  TLEDFKSELETLIVEIFNVEIPF 921


>gi|86143637|ref|ZP_01062013.1| hypothetical protein MED217_00050 [Leeuwenhoekiella blandensis
            MED217]
 gi|85829680|gb|EAQ48142.1| hypothetical protein MED217_00050 [Leeuwenhoekiella blandensis
            MED217]
          Length = 900

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 136/1012 (13%), Positives = 286/1012 (28%), Gaps = 176/1012 (17%)

Query: 42   LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
            L L    + +P+KRA             + +  LP   S+ ++VEE           L  
Sbjct: 17   LPLTQTVVVLPSKRAGNFFLQRLKLQLQETTCFLPKTISIEELVEEISGLTAASQTQL-- 74

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
                    +EL                          P S  N +   + L    + I+ 
Sbjct: 75   -------QVELYHTYQTHFEG--------------DNPESFLNFLGWGQTLLGDFNEIDR 113

Query: 162  EEKK-------WEDLHALKNEKYGMWWLLA------ADFLKIASKYWTERLVELNASSPV 208
                          +  L +        L          +    +++ + L  L      
Sbjct: 114  HLIDTNSFFDYLSAIKELNHWSTDQDSQLISNYLIFWKSISSYYEHYKQHLERLGLGYQG 173

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                  +     +L +  +  ++  G      A  +++      PN   +   +D     
Sbjct: 174  MLYRKAVENLERYLDQNEE-YVLFCGFNALNTAEQKIIDRFLERPN-TKIYWDID----- 226

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
                                  H      K           +K+    +++ +       
Sbjct: 227  --------------PYFLEDQNHVASRFIKT---------YLKKWNAAADKNFA------ 257

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
                                  +      ++          +   +   L    +    +
Sbjct: 258  -----------------FPVEQSNFNVEKNITATGIAQHVGQVKYVGQLLENLSNAELNE 300

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI----FKLNDFM 444
            +A+I  D +L   +   L     +++++ G+PL     ++   S          +   + 
Sbjct: 301  TAVILGDEHLLLPLLNSLPASIKHLNVTMGLPLEQVAQAAFFESWFQLQINKQGQGYYYK 360

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
             + +L+    A                E   L+      +++ L+   +       N   
Sbjct: 361  DVLSLLDQQYAILLLD----------GEREILKRTITEKNLIYLEPQFIIDSNASDNAKL 410

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
            +       S    E  +  +  I + +                                 
Sbjct: 411  LFSSWQNSSSSALEYILESIQAIKEIL--------------------------------- 437

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                 +    L F      L +    +         +          L+  ET+  K + 
Sbjct: 438  --FPQKNWLQLEFLHAFLELFTRLKNL-NDTYTYLNDLRTLKQFYKELLSQETLDFKGDP 494

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT-AEKYIGQ 683
               L I+G LESR+L+F  +I+  LNEG +P   ++N F+   ++ +  L T  EK    
Sbjct: 495  YQGLQIMGVLESRVLDFKNIIITSLNEGTFPSGKSQNSFIPFDLKIEAKLPTYREKDAIY 554

Query: 684  AAHDFEMANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
            A H F +    + +    +           SR+L +L       +    +          
Sbjct: 555  AYHFFRILQRAQKVNLIYNNEAGGLNSGEKSRFLLQLATDPNARYQYQEQSASAPVSLEP 614

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
              L    K P           +     +S S +   I +P   Y + +L ++ +   +  
Sbjct: 615  VTLKQVEKTPEIIEA----IKKHAASGFSPSALSTYIRNPIDFYYKYVLGVEELEAVEDV 670

Query: 803  PDRTDRGTLFHNIITELIKKRI-----NKNTPEINHLMKQIIDSHFE----KENLPPHID 853
                  GT+ H  +  L K  +      +   +I   +   +   FE      N+    +
Sbjct: 671  IAHNTLGTVVHESLENLYKPYLNTILTEEILQQILKQVNAEVQHQFELHYNALNIKTGKN 730

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKI---FVNIPAKMAIESIGIHLTGFADRIDLLKS 910
            +I  ++  +   +FL  E +   S ++I    +     + + +  I L G  DR+D L++
Sbjct: 731  LIIFNVAKQFVLNFLNLELQSVKSGKEIIIKALEAKYTIQL-TPEIKLKGTVDRLD-LEN 788

Query: 911  GFVDITDYKTGDNPKKETA------------QKLIDPQLSLEAAALKAGSFSQIDCR-KV 957
                I DYKTG   + +              ++    Q+   A  L       +    + 
Sbjct: 789  KVTRILDYKTGKVDRGQLVIKDWETLISDYKKQSKAFQVLCYALMLSKS--EGLPGACEA 846

Query: 958  ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
              + +  L   F       D    S  EL +   + L++++  + +   PF 
Sbjct: 847  GIISFKNLNSGFLKLSQDKDTAVTS--ELLQTFEEYLLKLINEILDINTPFT 896


>gi|256396909|ref|YP_003118473.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
 gi|256363135|gb|ACU76632.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
          Length = 1134

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 126/1089 (11%), Positives = 287/1089 (26%), Gaps = 124/1089 (11%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +     ++ A+++ T  +     P        V I   +++A  ELR           
Sbjct: 50   PGTGKTHTLVEAVISKTDPDRAALRPD------QVLILTFSRKAASELRDRIGRRLPLSG 103

Query: 73   TILPIIKSLGDVVEEKFTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
               P+  +             D  L       +S  ++ + +  L+    +         
Sbjct: 104  V-APLATTFHSFCYALVRRFQDPELFTEPIRLLSGPEQDVFVRDLVSGSIDVGIGGGALG 162

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                      +       A+ L  ++           +L           W  A+ F + 
Sbjct: 163  ERIQWPQDLRAALATRGFAEELRTVLARARELGLDPTELAQAARRADRGDWYAASAFFEE 222

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                   + V           +   + +    ++     + +     + P+  RL+  +A
Sbjct: 223  YLDVLDVQGVLDYGELVHRAVLLAGQEDVRRELRHDFRAVFVDEYQDTDPSQVRLLQALA 282

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
               +GA ++   D       +     +                   A L          +
Sbjct: 283  G--DGADLVVFGDPDQSIYQFRGADVRGILDFPEAFRRMDGSPADTAVLRTSRRCGPALL 340

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
            K   +++  M           LP +          E  + + +     V +        E
Sbjct: 341  KASRDLTRRMP-------IPLLPTEKVREHRDLAAEGPVADGEPIEGSVQVFTFPTPNTE 393

Query: 371  AISIAIALRMSLDENKKKS----ALITADRNLARRVKLELTRFGINIDISAGI-PLSTTL 425
              +I   +R +  E+         L+ +       ++  L   G+ +D S    PL+   
Sbjct: 394  LDNIVDMVRRAHLEDGVPWDEIAVLVRSATRSIPALRRALIAAGVPVDTSGDELPLAAEP 453

Query: 426  HSSILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
              ++L   L                L+  PL      E          E  A   N    
Sbjct: 454  AVAVLLQALRVADNEAALTPDVARALLSGPLGGMDAFELRKLARALRAEERAANQNGVRG 513

Query: 484  DIMDLKSLVLDRIA--------------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
               +  ++V +                   +     P     + E+  E A  L   +L+
Sbjct: 514  VPAEHSAVVPELARITEPSVNGVRPSEVLLREALAEPARLVAMDEDVAEPARRLGMLLLR 573

Query: 530  CITPLVTYKTNKNSTCGNLSISD------WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                L    + + +     S                 L+               + +   
Sbjct: 574  TRQILRGGGSVERALWELWSGGGDERDRNRAHRWPERLERTAQRGGNTGRAADRDLDAVC 633

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            +   ++   E  +  +       D+  + + G+++  +  +   + ++   +S+ L +  
Sbjct: 634  VLFDYAARAEDRATGRGVRNFIADLEAQELAGDSMAAQSSRGGAVRLMSAHKSKGLQWRF 693

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY-------IGQAAHDFEMANGTRH 696
            +I+ G+ +G+WP    +   L   +     L++ E+          +    +  A   R 
Sbjct: 694  VIVAGVQDGLWPDLRLRGSLLQADLIGRNGLRSMEEIPTASTLLAEERRLFYVAATRARE 753

Query: 697  LIYTRSLR-----ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT--- 748
             +   ++      ++      SR++  L V         L+KR          L      
Sbjct: 754  RLVVTAVDSALIGDDAAAEAPSRFVYELGVEVQP--LPGLRKRALAIPALVADLRRVLTD 811

Query: 749  -------------------TKQPHYKRPKPFPPLEAQPRT-------------------Y 770
                                 Q    RP        +                       
Sbjct: 812  PKSSDQLRQAAAERLARLADAQAGDGRPLVPSAHPDKWWGLVEETASEQPVRDPAKPLLL 871

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S S++  +       +                      G + H +  E+ K         
Sbjct: 872  SASQVAAIDECSLRWFLDHEAAAHEQKTV-----ALGFGNVVHVLADEVAKGDTPARLDV 926

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
            +   + ++ D     E                    FL      +  +          + 
Sbjct: 927  LMERLDRVWDR-LSFEAQWQSPQQKEEAR--AALERFLAWHVTDRGRLLHS-SEQEFDVR 982

Query: 891  I----------ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSL 939
            +          E   + + G  DR++  ++G V + D+KTG   P K  AQ+   PQL++
Sbjct: 983  LNVGAGDSEDGEGFDLRIRGSFDRVETDEAGLVYVVDFKTGKNVPTKNEAQEH--PQLAV 1040

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE-KSLKNLIEIV 998
                ++ G+   +   +      + L++          ++  S +   E    K L  + 
Sbjct: 1041 YQLVVREGAIQGV-SNESGGAELVFLREGDAAGLPKTAEQDPSLELPGETPIEKKLATMA 1099

Query: 999  TLLQNGEQP 1007
              + +    
Sbjct: 1100 ARVLDENFA 1108


>gi|78356630|ref|YP_388079.1| hypothetical protein Dde_1587 [Desulfovibrio desulfuricans subsp.
            desulfuricans str. G20]
 gi|78219035|gb|ABB38384.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
            desulfuricans str. G20]
          Length = 997

 Score =  259 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 143/1079 (13%), Positives = 294/1079 (27%), Gaps = 155/1079 (14%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            P V  I   + F + ++  +   T  E                I  P  R  + L   F 
Sbjct: 9    PPVAIIPWQNDFLQALLRYVTEHTDGET-----------GRAVIVFPHSRPRRYLLDLFR 57

Query: 66   EITG-KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
                  +  ++P I  + + +    TA           +  + R+  L   +        
Sbjct: 58   TSPDIPRPCLIPQILPVSEFLSAVSTAGSTAQ---PRTIELLDRVGLLLECVRELGIGEQ 114

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKN---------LADIIDIIETEEKKWEDLHALKNE 175
                   P S    P  P +A+ L            LA +++    +  + +D H +   
Sbjct: 115  PPSAGEMPASATFTPRGPLSALPLTDARRFFPWGMRLAALLEDFYNQGLEPDDYHYM-EG 173

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
                +     + L    + +T RL   N ++P         A            I IAG 
Sbjct: 174  DVVDFAARLLEQLGSIHRLYTGRLDAENWTTPGYDAFRAAHAADSLPAMFAGKIIFIAGF 233

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
             G      ++ +T+ +     +VL                       + + +   H    
Sbjct: 234  YGLTGVEKKVFTTLRSACGAHMVLHT-------------DPALAAKKTVHWSCKEH---- 276

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
                                                     S +         +   +  
Sbjct: 277  ----------------------------------------ESLLEQWQAGTVLLEEPEDR 296

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
             + +   E  +   +  ++   L  +  ++ ++SA++  D  +   +   L R   +++I
Sbjct: 297  HATIEYHEGFDLHSQLDALQKKLTQT--DSLEQSAVVLPDSGMLMPLLHHLPR--KDVNI 352

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKL----NDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
            S G PL  +  + +L ++++           +  I  L++HP  K      + +R    +
Sbjct: 353  SMGYPLGKSPLAQLLDTIMDLQEGRTPSGYPWRRIIDLIRHPYLKMLS--LHNARPLQQV 410

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                 R  +      D ++L ++ +A                  D E    LV  I    
Sbjct: 411  FRHMERSVRQGARHTDPRNLQIEYLAEADATGAGTAAV------DDEALAALVSRIFDL- 463

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
                   T          ++       T L     D  ++ P             + +  
Sbjct: 464  -----TLTRWERVSTPQQLAGVLADMCTLLLEQGADMWKRFPVDAECMYRLMHRVIPALR 518

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
              T    + ++     I+  +++ E V  + E  + L ++G LE+RLL F  + +    E
Sbjct: 519  ESTVRDAELDSGLLYTILREVMNAERVPFEAEPLTGLQVMGMLEARLLRFRRVYVLDATE 578

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLREN---- 706
               P   A +P L   ++  L L         +A++F     G R +             
Sbjct: 579  NNLPGVPANDPLLPENLRGLLGLPDIRHRERVSAYNFFRLIKGAREVTLLYQAGTTQSGL 638

Query: 707  -NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT---RKLDYTTKQPHYKRPKPFPP 762
             +     SR+L+ L+          L+         +     +                 
Sbjct: 639  FDEKKQRSRFLEELIWQDEQRTGRLLQAGTPPLHAVSYSIPAISLHDAVIPRSATIDDRI 698

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
             E   R  S + +   +  P + +  R+ ++       +  D    G L H ++ E    
Sbjct: 699  RELLARPVSATMLDSYLRCPVSFFYERLCRIAPAEQVNEGDDHLGVGDLMHAVLQEFFTP 758

Query: 823  RINK---NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS-HSFLEHEEKIQSSI 878
               +           +  +         L   +      +                  + 
Sbjct: 759  YAGQEITRGQLDAKALTGLFHQRLHSSGLQDTLPYDSYCMLSVAGPERLTRFLNNQPETT 818

Query: 879  EKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA------- 929
              + +    +  +E+ G    + G  DR+D    G   + DYKTG   K           
Sbjct: 819  RILKLEEALEAKVEAGGSTYWIAGRLDRVDER-DGCDIVLDYKTGTARKPAQDVWKSEDL 877

Query: 930  --------------------QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969
                                  L   QL           ++    R   N  +I L+   
Sbjct: 878  WEKIARWHPAAEDDPLPLLSDALRSIQLPFYLYL-----YATACGRPAGNAGWIALRDSG 932

Query: 970  KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            K + +     +      +   +  +I  +         F        K      Y +L 
Sbjct: 933  KEEMLFTAAGRDEVQHAAAHQIPAIIGFLLQHMTTSSCFRPRR---GKHCDWCFYANLC 988


>gi|222475020|ref|YP_002563435.1| hypothetical protein AMF_308 [Anaplasma marginale str. Florida]
 gi|222419156|gb|ACM49179.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
          Length = 946

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 156/1057 (14%), Positives = 321/1057 (30%), Gaps = 176/1057 (16%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             V T+  S  F   +    +   +                  + VP+    Q L  E  +
Sbjct: 24   RVLTVHCSESFVETVARYAIAHRIDA----------------VVVPSSTDAQLLSHEVSK 67

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
            +T   + +   I +   V           +   +  +    +LL LA+ +  W       
Sbjct: 68   LTAHGANL--DILAFTSVD-------GCAATAYDASMGAAGQLLLLAQFVAQWSAAHRAD 118

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
                       L                      T     + L    +++         D
Sbjct: 119  YPLQIASELSLLLDEL-----------------HTNCVGPDALQVFGDDELSGR-CRMID 160

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            FL     +W +       +        L+              I++AG       T  L 
Sbjct: 161  FLCDLVPWWEQERKSRGLAPSGCGIGPLVEGFERS-----GKRIMVAGIVFGKVFTRFLR 215

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              + +  +  IVLP +D  +    W T+             +S H QY + +LL  L + 
Sbjct: 216  LLMHSVSDAVIVLPYVDLGLSDREWQTL-------------HSEHYQYYVMQLLKNLGVG 262

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            R +V+RLG V        +   +                   +        D+ LI   +
Sbjct: 263  RNEVERLGQVKVNHVVERLFNFELTSH---------------LAMNYGTGEDIELIACSS 307

Query: 367  EREEAISIAIALRMSLDENKK-----------KSALITADR---NLARRVKLEL------ 406
            E EEA+ +   L+    E  +            +A     +   ++ +     L      
Sbjct: 308  EAEEAVKVVEILKSCTTEAHRGAKAEFSCIGGWAASAKPTQTAVDVDKDTIRSLEGKSVT 367

Query: 407  --------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
                     R    + I A       + S+++   +  +    + + +  ++KHPL + G
Sbjct: 368  FVGSDSLAARVDALLRIGANYCDYDEIISALVLCSIEVVVSSGNAVQLLCMLKHPLVRLG 427

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
            +      +     E+  +RG+  +                                E+ +
Sbjct: 428  YDADEYRKLLAEFEIRVVRGHSAT----------------------GFEAIGSAIREEFQ 465

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                    +++ I+P++  +          +I +     V CL+ +      KL      
Sbjct: 466  QLEEFWRKVVEAISPMINVREGS-------TIGEIAAAHVQCLERL----MNKLDTSECT 514

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                 +S+ FS        +   ++     +  L+       +  K   + +        
Sbjct: 515  HALNKISTFFSLFDNYCMGVAVFSLTSYKEVCTLLVRAFFTIERNKLFGVNLAT------ 568

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
               D +IL G +E  +      +  L+  ++  L L   E+Y G+  +        + L 
Sbjct: 569  --RDAVILSGFSEAEFK--PRCSHLLNNWVRERLGLPLLEEYCGRMMYVLYSFFYAKKLR 624

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
             T+S     +      W++ L  L        LK R + Y      +        ++   
Sbjct: 625  ITKSAESFGVAVAEPIWIRYLTFL--------LKDRTERYAATQAVVSSNVVADPHRASA 676

Query: 759  PFPPLEAQPRTYSFS---EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
            P P L+ + +  S      +  LI++PY  Y + ILK+                 + H I
Sbjct: 677  PNPGLDVRKKAMSVLTAKAVDTLISNPYVFYVQYILKMFPTKTVNTQHSVRGFNIIAHKI 736

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            + E +     +      +L+ +I    F+      P+  ++W   F +++ +F   + + 
Sbjct: 737  LREYLVSIGTEAGD--YNLLLEIAKRQFDAIAVTHPYAHVLWWPKFEEMARNFFAVDSER 794

Query: 875  QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
            +S+  +          + S  I +    DR++ +K G V +   K G  P K   +    
Sbjct: 795  RSAASRTESGKSFVWYV-SEEIQVIARCDRVEYMKDGSVMVACNKVGAAPSKADMRCGFA 853

Query: 935  PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
                   A + A   ++     VA+  Y ++             +     E+   + +  
Sbjct: 854  S-----RAIVDAVCVAESTGANVASFAYWKIAP-----WTVEVVQVEDCAEVIHAAKQGF 903

Query: 995  IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031
             E++        PF       E  +  S Y+ L+R+ 
Sbjct: 904  KELLLRYAEQMTPFSPR----EDFSTFSAYELLSRIR 936


>gi|269127955|ref|YP_003301325.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
 gi|268312913|gb|ACY99287.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
          Length = 1059

 Score =  258 bits (659), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 131/1064 (12%), Positives = 282/1064 (26%), Gaps = 133/1064 (12%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +     ++ A+++            +P     V +   +++A +ELR        +++
Sbjct: 43   PGTGKTTTIVEAVVD-----RIERRGCDPE---RVLVLTFSRKAAEELRHRITGRL-RRT 93

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLY 131
            T  P+  +           D +      P + S  ++LLE+ RL+        +      
Sbjct: 94   TRAPLALTFHGYAHALLRRDAIRRGQEPPRLLSAPEQLLEVRRLL--------EGEAADG 145

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                             A+ L D +          ++L  L   K    W+    F+   
Sbjct: 146  AVHWPRRLHEALTTRGFAEELRDFMLRAAERGYGPQELEELGYLKGRDDWVAIGRFMNRY 205

Query: 192  SKYW--TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
             + +     L              L   E     +     + +     + PA   L+  +
Sbjct: 206  EQRFAVDPVLTYDYTDLIEAAAALLAEEEVRFQERAAYDAVFVDEYQDTDPAQEHLLKHL 265

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
            A      +V+   D       +     +           +      +  L +     R  
Sbjct: 266  AGDGRDLVVV--GDPDQSIYGFRGADVRGIMDFPHRFPTADGRPAPVVALRE----CRRM 319

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
               +   S  +  R                 +        P       +V ++ AD+  +
Sbjct: 320  SPAILEASRRIARR------------LPAGPSAAEHRALRPRQGAEDGEVHVVIADSPGQ 367

Query: 370  EAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTT 424
            EA  +A  LR +         + + L+ +       ++  L + G+ + ++    PL   
Sbjct: 368  EAALVADELRRAHLLEGVPWSRMAVLVRSAVRQVPPLRRALAQAGVPVVVAGDELPLMGE 427

Query: 425  LHSSILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
                    LL A  +           L+  PL         L R K AL  V      + 
Sbjct: 428  PAVRPFLMLLRAALEKGYLTGEVAEELLTGPLGG--ADALTLRRLKRALREVETLSGGDR 485

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                 L + + D       +                      + +   +       T + 
Sbjct: 486  PVGELLVAALEDPRELLLVHP---------------KVRAPAERVAHLLQVARQGGTAEE 530

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                    S      +               +L         ++ F+  +          
Sbjct: 531  VLWNVWQASGLADAWLEQSAKGGARGAAADRDLDAVVVLFERAARFTDRMPQAG----PE 586

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    I G+T+  +  +   + IL    ++ L ++ +I+ G+ EGVWP    +  
Sbjct: 587  LFVAEISGEEIAGDTIADQAPEGEAVRILTAHRAKGLEWEVVIVAGVQEGVWPDLRLRGS 646

Query: 663  FLSRVMQ-------------------SDLNLKTAEKYIGQAAHDFEMA-NGTRHLIYTRS 702
             L                        +      A K + +    F +A    R  +   +
Sbjct: 647  LLGVEELIEHHAGSDLADLLAEGGRGTAAGASMAAKLLDEERRLFYVAVTRARRRLVVTA 706

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP--- 759
            +  ++     SR+L  L          + K R          L      P   +P     
Sbjct: 707  VGGDDTEERPSRFLNELAPGALERSELDEKTRWLSLPALVADLRAVVTDPSRPQPLRRAA 766

Query: 760  ------------------------------FPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                                                +  T S S+++             
Sbjct: 767  AAHLARLARAGVRGAHPDSWYAITALSDPRPAFTADEQITISPSQVETFTTCGLRWLLAS 826

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             +        +        G + H +    +         E        I       +  
Sbjct: 827  AVGARDGGPDEL----ATMGKVVHAVAE--LAGSHGDLAEEDVAQRLDEIWKELNFGSSW 880

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909
                   +    K+   FL       + +  + +    ++ +    + + G  DR +  +
Sbjct: 881  YSGKQREQA--AKMVDKFLAWHRANPNEL--VALEEDFQVEL--GRVVIRGRIDRAERDE 934

Query: 910  SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969
             G   + D KT    K    +    PQL +   A+  G+  +    +      +++ +  
Sbjct: 935  HGRAVVVDIKT-SAQKVPDKELARHPQLGVYQYAVTLGALQRHGLVEPGGAVLVQVGKGS 993

Query: 970  KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
              +     ++   A++      K L+E+V     GE  F +   
Sbjct: 994  YENKAREQRQPPPAEDGDPDWPKKLVEVVATGMAGEV-FQARPN 1036


>gi|189184253|ref|YP_001938038.1| hypothetical protein OTT_1346 [Orientia tsutsugamushi str. Ikeda]
 gi|189181024|dbj|BAG40804.1| hypothetical protein OTT_1346 [Orientia tsutsugamushi str. Ikeda]
          Length = 946

 Score =  258 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 162/1012 (16%), Positives = 346/1012 (34%), Gaps = 118/1012 (11%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L  V + +P  +  QEL+   +    K++ +LP + +L   +   F A    S ++   
Sbjct: 27   SLDKVKVILPYSQQCQELKKIIMLTARKEAMLLPDVLTLKQFIT-SFIAASNYSLSICCQ 85

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +S+ ++   L+++I                      PI   +A+ L+  L  +   +E++
Sbjct: 86   LSSYEQEAALSKIIQQHNQ----------------QPIRLGDALKLSGKLLQLFQQLESQ 129

Query: 163  EKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
            +     L    ++     +W     FL  A   W++     +  S       L      +
Sbjct: 130  QINLTQLKDFVDQIDSSEYWQNTYKFLSFAYIEWSKLYSNSSCDSKSDIFSQLQDLLKSN 189

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
            L       +I+AG   +      +   V +   G ++LP         +  ++   S  +
Sbjct: 190  LSS---NIVILAGLLPTSKLELVIFKGVLSCKLGHVILP---PIYLEELCYSVKNSSDTL 243

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                        Y     +   +I  +D+  L            +    FL     ++ +
Sbjct: 244  ------------YDFQYFVKSCNISLDDITYLAKAIALPTKNKPIQLSEFLGLPKLNLVS 291

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNL 398
                     NI     D+  ++ +++ +EA  +A  +   L   +    K  ++T   + 
Sbjct: 292  DADATKFNSNI---PIDIEYVKVNSQYDEAKLVAAMIHNYLIKANTQHNKILVVTTTPSF 348

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
               + + L+++ IN      + +   L  + +  L + +           L+K       
Sbjct: 349  TTLLTMHLSKYQINYANLTNVDIKQLLEINFILVLADLVSSNFSISKFINLIK------- 401

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                      ++         KN +   +LK ++LD                    +D  
Sbjct: 402  ----TSLLTSSSSNKFENLILKNKFQQSELKQILLDL----------------TISKDDS 441

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                    IL  +  L  Y  +    C            +   +N+          +W  
Sbjct: 442  ELQKWATFILSALDDLWIYYNSNTILCD-----QLIIGLLQAAENLTEG------KIWQF 490

Query: 579  EEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            +  K +S +  ++I         +  ++ +++T L+       + + ++ + I G   + 
Sbjct: 491  QFSKRISDVLKEVIHIAKQFGNIDIRDFSNVLTELVTMIKFNYEHDYNANVVITGADSAI 550

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            LL+ D +I+   N   WP N+ +NP+L++ + S L L     +  +  +         H+
Sbjct: 551  LLSADYIIIPEFNNDHWPGNSIQNPWLNQAIYSKLGLIERNAHYDRKQYILYTILQKAHV 610

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL---DWTRKLDYTTKQPHY 754
                S    +  T  S+++ +L +L   +    ++          ++T  +         
Sbjct: 611  SLINSQFTASSKTTDSQFILKLQLLAFKNPLIRIRVNDLKLQYNQNYTSNVVDNKSTTFQ 670

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
              P          +T S ++I+ LI +PY  YA+ IL+L  +        +   G   H 
Sbjct: 671  ILPGILLSSADIVKTISATDIEMLIRNPYGFYAKNILRLKPVILNDDQLTQAKFGDFIHK 730

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            +I        +    ++ +    I     +  N      +IW    H+++  F+  + + 
Sbjct: 731  VIHRYTICYKDMEESKLINYFIDIGKQLIDCYNCSSFAKMIWLTKLHQLAEEFVRFDMER 790

Query: 875  QSSIEKIFVNIPAKMAIESIGIHLTGFA---------------DRIDLLKSGFVDITDYK 919
            ++   KIF                +G                 DRI+  ++G   I D+K
Sbjct: 791  KNEGFKIFSEQ-------------SGQISLNINNNALNIIAIADRIEYSQNGECYIIDFK 837

Query: 920  TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
            TG  P K+  Q+ I  QL +E+  L  G F  +       + YI++        +    +
Sbjct: 838  TGTVPNKKEVQQGIATQLIIESIILYRGGFKNLPAMMPNKIIYIKITS---TKPLLEFTE 894

Query: 980  KYSADELSEKSLKNLIEIVTLLQ-NGEQPFISHLRLSEKSNIQSEYDHLARV 1030
                 E+ +K    L+E++     +G   F S +   + +   + Y HLAR 
Sbjct: 895  ITVDQEMLDKHELGLVELLQYYIKDGGVFFPSPVD--KLAPKYNNYKHLARY 944


>gi|255002999|ref|ZP_05277963.1| hypothetical protein AmarPR_01685 [Anaplasma marginale str. Puerto
            Rico]
          Length = 937

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 156/1057 (14%), Positives = 321/1057 (30%), Gaps = 176/1057 (16%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             V T+  S  F   +    +   +                  + VP+    Q L  E  +
Sbjct: 15   RVLTVHCSESFVETVARYAIAHRIDA----------------VVVPSSTDAQLLSHEVSK 58

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
            +T   + +   I +   V           +   +  +    +LL LA+ +  W       
Sbjct: 59   LTAHGANL--DILAFTSVD-------GCAATAYDASMGAAGQLLLLAQFVAQWSAAHRAD 109

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
                       L                      T     + L    +++         D
Sbjct: 110  YPLQIASELSLLLDEL-----------------HTNCVGPDALQVFGDDELSGR-CRMID 151

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            FL     +W +       +        L+              I++AG       T  L 
Sbjct: 152  FLCDLVPWWEQERKSRGLAPSGCGIGPLVEGFERS-----GKRIMVAGIVFGKVFTRFLR 206

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              + +  +  IVLP +D  +    W T+             +S H QY + +LL  L + 
Sbjct: 207  LLMHSVSDAVIVLPYVDLGLSDREWQTL-------------HSEHYQYYVMQLLKNLGVG 253

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            R +V+RLG V        +   +                   +        D+ LI   +
Sbjct: 254  RNEVERLGQVKVNHVVERLFNFELTSH---------------LAMNYGTGEDIELIACSS 298

Query: 367  EREEAISIAIALRMSLDENKK-----------KSALITADR---NLARRVKLEL------ 406
            E EEA+ +   L+    E  +            +A     +   ++ +     L      
Sbjct: 299  EAEEAVKVVEILKSCTTEAHRGAKAEFSCIGGWAASAKPTQTAVDVDKDTIRSLEGKSVT 358

Query: 407  --------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
                     R    + I A       + S+++   +  +    + + +  ++KHPL + G
Sbjct: 359  FVGSDSLAARVDALLRIGANYCDYDEIISALVLCSIEVVVSSGNAVQLLCMLKHPLVRLG 418

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
            +      +     E+  +RG+  +                                E+ +
Sbjct: 419  YDADEYRKLLAEFEIRVVRGHSAT----------------------GFEAIGSAIREEFQ 456

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                    +++ I+P++  +          +I +     V CL+ +      KL      
Sbjct: 457  QLEEFWRKVVEAISPMINVREGS-------TIGEIAAAHVQCLERL----MNKLDTSECT 505

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                 +S+ FS        +   ++     +  L+       +  K   + +        
Sbjct: 506  HALNKISTFFSLFDNYCMGVAVFSLTSYKEVCTLLVRAFFTIERNKLFGVNLAT------ 559

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
               D +IL G +E  +      +  L+  ++  L L   E+Y G+  +        + L 
Sbjct: 560  --RDAVILSGFSEAEFK--PRCSHLLNNWVRERLGLPLLEEYCGRMMYVLYSFFYAKKLR 615

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
             T+S     +      W++ L  L        LK R + Y      +        ++   
Sbjct: 616  ITKSAESFGVAVAEPIWIRYLTFL--------LKDRTERYAATQAVVSSNVVADPHRASA 667

Query: 759  PFPPLEAQPRTYSFS---EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
            P P L+ + +  S      +  LI++PY  Y + ILK+                 + H I
Sbjct: 668  PNPGLDVRKKAMSVLTAKAVDTLISNPYVFYVQYILKMFPTKTVNTQHSVRGFNIIAHKI 727

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            + E +     +      +L+ +I    F+      P+  ++W   F +++ +F   + + 
Sbjct: 728  LREYLVSIGTEAGD--YNLLLEIAKRQFDAIAVTHPYAHVLWWPKFEEMARNFFAVDSER 785

Query: 875  QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
            +S+  +          + S  I +    DR++ +K G V +   K G  P K   +    
Sbjct: 786  RSAASRTESGKSFVWYV-SEEIQVIARCDRVEYMKDGSVMVACNKVGAAPSKADMRCGFA 844

Query: 935  PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
                   A + A   ++     VA+  Y ++             +     E+   + +  
Sbjct: 845  S-----RAIVDAVCVAESTGANVASFAYWKIAP-----WTVEVVQVEDCAEVIHAAKQGF 894

Query: 995  IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031
             E++        PF       E  +  S Y+ L+R+ 
Sbjct: 895  KELLLRYAEQMTPFSPR----EDFSTFSAYELLSRIR 927


>gi|153806227|ref|ZP_01958895.1| hypothetical protein BACCAC_00482 [Bacteroides caccae ATCC 43185]
 gi|149130904|gb|EDM22110.1| hypothetical protein BACCAC_00482 [Bacteroides caccae ATCC 43185]
          Length = 953

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 131/1067 (12%), Positives = 306/1067 (28%), Gaps = 170/1067 (15%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
              F + +   L      +           L+   +  P KRA           +  +   
Sbjct: 2    QSFLQLVAHDLYAKIGND-----------LSRTVLIFPNKRANLFFNEYLAGESD-QPIW 49

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
             P   S+ D+ ++           L            +  L  +++ +            
Sbjct: 50   SPAAMSISDLFQKLSVQKTGDPIRL------------VCELYKVFKEETESQ-------- 89

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
                  +  +  +  + L    D ++      + L +                LK     
Sbjct: 90   -----ETLDDFYFWGELLISDFDDVDKNLVDADKLFS------------NLQDLKSLMDD 132

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            +     E   +    ++   +    E   K      +            + ++ V     
Sbjct: 133  YEFLDKEQEEAIQQFFRNFSIERRTELKEKFIS---LWDKLGTIYHHYRKNLTEVGIAYE 189

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
            G +    ++          +                       +    L    + +    
Sbjct: 190  GMLYRNVIEQ---------LNTDQLKYDKYIFVGFNVLNKVEKEFFRKLQKADKAIFYW- 239

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
               +  Y + +   ++    + +     + L     +  K    +  I A  E  +A  +
Sbjct: 240  -DYDIFYTQQIKKHEAGEFINRNLKDFPNELPASYFDSLKKPKKIRYISASTENAQARFL 298

Query: 375  AIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
               +R +   +N+K++A++  +  L   V   +     N++I+ G PL+ T   S + + 
Sbjct: 299  PEWIRTTFSSDNEKENAVVLCNETLLLPVLHSIPEEVKNVNITMGFPLAQTPVYSFINAA 358

Query: 434  LNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
            +               +  ++ ++KHP  +    +  +      +E    + N+      
Sbjct: 359  MELQTNGYRFDTGRFTYETVSAILKHPYTRQLSTKADI------IERELTKTNRFYPLPS 412

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            +LK                           +     L D+++  I  + T    +     
Sbjct: 413  ELKQ----------------DEFLANLFTPRNGIKELCDYLIGLIKDISTLYRKEGEY-- 454

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKANAIEW 605
                                  +     L+ E   ++   +           +       
Sbjct: 455  ----------------------NDIFNQLYRESLFQSFLKINRLYSLIESGELNIQPHTL 492

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
              +I++++    +    E +  + ++G LE+R L+F  L++  LNEG  PK   ++ F+ 
Sbjct: 493  KRLISKVLTSSNIPFHGEPAIGMQVMGVLETRNLDFRNLVMLSLNEGQLPKTGGESSFIP 552

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLG 723
              ++    + T E      A+ F        ++    +   +       SR++ +LLV G
Sbjct: 553  YNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQLLVEG 612

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
              +      + GQ      +     T++   +    +     +    S S +   ++   
Sbjct: 613  PHEITREYLEAGQSPQSTPKIEIPKTQKILERLYHIYDVTNPKSLILSPSALNTYLDCRL 672

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMKQ-- 837
              Y R I  L        + D    GT+FH        +  +        ++  L++   
Sbjct: 673  RFYFRYIAGLKTPEEVSAEIDSALFGTIFHRSAELAYTELTSNGQMIQKEDLERLLRNDV 732

Query: 838  ----IIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                 +D  F++E              + +I   +        L ++ +  +  E + + 
Sbjct: 733  KLQGYVDQAFKEEFFKVKPEEKPEYNGVQLINSKVITSYLRQLLRNDLQ-YAPFEMVAME 791

Query: 885  IPAK------MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP-- 935
                        +    + L G  DR+D  K   + I DYKTG NPK     ++L  P  
Sbjct: 792  QAVSEKITIQTDLGPFTVRLGGTIDRMD-AKESTLRIVDYKTGGNPKIPANIEQLFTPSE 850

Query: 936  -------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS- 987
                   Q  L A+ +      ++       L YI          +    +         
Sbjct: 851  TRPNYIFQTFLYASIMCRQQTLKVAPA----LLYIHRAASDSYSPVIEMGEPRQPKIPVN 906

Query: 988  ------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                  ++  K L  ++  + +  +PF     +  K     ++  + 
Sbjct: 907  NFTFFEDEFRKRLQTLLEEIFSENEPFTQTEDI--KKCSYCDFKAIC 951


>gi|188995319|ref|YP_001929571.1| hypothetical protein PGN_1455 [Porphyromonas gingivalis ATCC 33277]
 gi|188594999|dbj|BAG33974.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277]
          Length = 1007

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 140/1126 (12%), Positives = 289/1126 (25%), Gaps = 236/1126 (20%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
            PF R++                      +  +      +RA    +     I+  K    
Sbjct: 3    PFLRQIAAHYYKEYG-----------EDIHRLCFVFQGRRAGLFFKRHLSGISA-KPLFA 50

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI----LIWRNKLPDIIKDLY 131
            P   +L D++                P   + R   L  L      IW    P      +
Sbjct: 51   PRTTNLKDLLLGLS------------PYKELDRTALLFELYNTYKEIWPQAEPFDQFIFW 98

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW---------- 181
             +  L         +  AK L   +      E  +  L   +      +W          
Sbjct: 99   GDIILKDFNEIDKHLVSAKALYSNLKDFREMENDFSFLSEKQIAAIRSFWESFSPASGQM 158

Query: 182  -----LLAADF---LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM---------- 223
                     DF   L      + +RL +             +    +             
Sbjct: 159  ENGCQQSFLDFWKLLSPLYIRFNQRLADQGNGYHGMILRHTVDRLRQRETSVRELLSSAD 218

Query: 224  ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                      +  G     PA   ++  +             D  +  +  N       +
Sbjct: 219  RGGNADPDKYVFVGLFALSPAEEYILVRI-KAEGICDFCFDDDLSLLHSAGNLTGTILDH 277

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                                                                    +  +
Sbjct: 278  NKEIF------------------------------------------------GKQTPWQ 289

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITAD 395
             +           K   D+ +I   +E  +A  +   +     E         +A+I  D
Sbjct: 290  ESSENGQTSSLEDKPAPDIRIIRTASEIVQAKLLPQLIEELYPEGYSDKEGIQTAIILPD 349

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK--------LNDFMAIA 447
              +   V   L      I+++ G PLS +  S  +   +    +             A+ 
Sbjct: 350  TGMLMPVLNSLAETVGRINVTMGYPLSQSAISIFVEKWIRVQAEIRLIQKVPHFRTDAVL 409

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             L+   L      +       N          +      +L +L+  R          P 
Sbjct: 410  DLLNSVLLTPLLTDHSRDLLSNREVTKQYYVPEERLWGDELTNLLFSR----------PD 459

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
               +L +    L   + + +                            L           
Sbjct: 460  SGQQLLDRLFLLLEKIAESM----------------------------LFQPADSEYDQS 491

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
            E      L      + + +    ++E    +  +      ++  L+ G ++  + E    
Sbjct: 492  EETNNMELEQIYHYRNILNRLRGLVE-SYAMDMSVRSAALLLQGLVSGVSIPFEGEPLVG 550

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
            L I+G  ++R L+F  LI+  +NEG  P    +   +   ++    L   E      ++D
Sbjct: 551  LQIMGIDQTRSLDFKHLIILSVNEGKLPSRVYETTMIPYTLRRGYGLPVNEVNEATQSYD 610

Query: 688  FEMANGTRHLI--YTRSLRENNIPTIASRWLQRLLVL---------------GGTDFFDN 730
            F         +     +  +       SR+++++  L                       
Sbjct: 611  FFRLIQRAESVTMLYDARSDQLGGGEESRYIRQMRFLFDMPLKVQELHLTGSLPHSPAIC 670

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
            ++K G+      R L+Y  ++            E +    S S I   +  P   Y   +
Sbjct: 671  VRKEGEVLTKLHRFLEYDNEESL--------DPEERLSALSASSINTYVACPLRFYFENV 722

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKK----------RINKNTPEINHLMKQIID 840
              +       +     D GT+ H  +  + K            +++     N  + +I+ 
Sbjct: 723  RGIREENASDELMAANDFGTVVHRSMELIYKPCCGGGIVSSDILSRWLDPKNATIARIVR 782

Query: 841  SHFEKENLPPH--------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI- 891
              + +E L           ++ ++  +  K     LEH++ +      I      K +  
Sbjct: 783  QAYTEEYLRSANTQGALSGLNHLYCIMIEKYVRRILEHDKSLAP-FRYIDSERRVKGSFS 841

Query: 892  --ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK--------------KETAQKLID- 934
                  + L G  DRID L      I DYK+GD                  ++ +     
Sbjct: 842  LSNGSRVRLHGIIDRIDELNEECRRIVDYKSGDTTTELGSWDLMFQHPIAGKSKKHPTAI 901

Query: 935  PQLSLEAAALK-----AGSFSQIDCRKV--ANLFYIRLKQKFKIDCITND-----KKKYS 982
             Q  L A   K      G  S++             + K+ +    +  +     ++   
Sbjct: 902  AQTLLYALMAKMQMENEGEGSELPLCPTIYGFKELYKQKEDYTGVVVLKEVGKAIEQITD 961

Query: 983  ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             D++ E   + L   +  L + + PF     +  ++     +  L 
Sbjct: 962  FDQICEMFEERLRTCLDELFDPDIPFTETEDI--RTCSYCPFASLC 1005


>gi|298387755|ref|ZP_06997306.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
 gi|298259611|gb|EFI02484.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
          Length = 954

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 144/1074 (13%), Positives = 297/1074 (27%), Gaps = 183/1074 (17%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
              F + +   L      +           L+   +  P KRA           +  +   
Sbjct: 2    QSFLQLVAHDLYAKIGND-----------LSRTVLVFPNKRANLFFNEHLAGESD-QPIW 49

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK----LPDIIKDL 130
             P   S+ D+  +           L            +  L  ++R +            
Sbjct: 50   SPAAMSISDLFRKLSVQKAGDPIRL------------VCELYKVFREETESQETLDDFYF 97

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            + E  +S        +  A  L   +  ++     +E L   + E           F + 
Sbjct: 98   WGELLISDFDDVDKNLVDADKLFSNLQDLKNLMDDYEFLDKEQEE-------AIQQFFQN 150

Query: 191  ASKYWTERLVELN---ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
             S      L E                    AE                  I     L  
Sbjct: 151  FSIERRTVLKEKFISLWDKLGTIYHRYRENLAEL----------------GIAYEGMLYR 194

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             V         L          I+      +   T          +       D    K+
Sbjct: 195  NVIEQ------LDTTRLKYDKYIFVGFNVLNKVETKFFQLLQDADKAMFYWDYDLFYTKQ 248

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                  G        R++ +  + LP                 +  +   ++  I A  E
Sbjct: 249  IVKHEAGE----FINRNLKLFPNELPESCF-------------DTLRKPKNIRYISASTE 291

Query: 368  REEAISIAIALRMSL--DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
              +A  +   ++ +L     +K++A++  +  L   V   + +   N++I+ G PL+ T 
Sbjct: 292  NAQARFLPEWVQSTLSTANEEKENAVVLCNEALLLPVLHSIPQEVKNVNITMGFPLAQTP 351

Query: 426  HSSILTSLLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
              S + + +               +  ++ ++KHP  +                    R 
Sbjct: 352  VYSFINAAMELQTNGYRTATGRFTYETVSAILKHPYTRQLSINAEPLE----------RE 401

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
               +     L S +                        +     L D++ + I  +    
Sbjct: 402  LTKTNRFYPLPSELKM------------DDFLIKLFTPRSGIKELCDYLTELIKDISLLY 449

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
              ++                                     +  T  +    +IET   +
Sbjct: 450  REESEYNDIF----------------------NQLYRESLFKSYTTINRLYSLIET-GEL 486

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                     ++++++    +    E +  + ++G LE+R L+F  +IL  LNEG  PK+ 
Sbjct: 487  NVRTDTLRRLVSKVLTASNIPFHGEPAIGMQVMGVLETRNLDFRNIILLSLNEGQLPKSG 546

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWL 716
              + F+   ++    + T E      A+ F        ++    +   N       SR++
Sbjct: 547  GDSSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLLYNTSSNGLNRGEESRFM 606

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
             +LLV G         + GQ     T      T +   +    +     Q    S S + 
Sbjct: 607  LQLLVEGPHKITREYLEAGQSPQGTTDISIEKTPEVFERLRCSYDCSNPQSYILSPSALN 666

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEIN 832
              ++     Y R + +L        + D    GT+FH                    ++ 
Sbjct: 667  AYLDCRLKFYYRYVARLKAPDEVSAEIDSALFGTIFHLSAQLAYTDLTANRKIIQKEDLE 726

Query: 833  HLMKQII-----------DSHF----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
             L++  +              F    +++     + +I   +        L ++ +  + 
Sbjct: 727  RLLRNEVKLQNYVDLAFKQELFKVPADEKPEYNGVQLINSKVIVSYLKQLLRNDLQ-YAP 785

Query: 878  IEKIFVNIPA--KMAI----ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQ 930
             E + +  P   K+ I      I + L G  DR+D  K   + I DYKTG +P      +
Sbjct: 786  FEMVAMEKPVAEKITIQTGQGPITLRLGGTIDRMD-AKDTTLRIVDYKTGGSPKTPANIE 844

Query: 931  KLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
            +L  P         Q  L AA +      ++      +L YI          +    +  
Sbjct: 845  QLFTPSETRPNYIFQTFLYAAIMSRQQSLKVAP----SLLYIHRAASESYSPVIEMGEPR 900

Query: 982  SADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                         ++  + L  ++  + +  +PF        K     ++  + 
Sbjct: 901  QPKIPVNNFAFFEDEFRERLQRLLKEIFDENEPFT--QTEDTKKCAYCDFKAIC 952


>gi|297562751|ref|YP_003681725.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
            43111]
 gi|296847199|gb|ADH69219.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
            43111]
          Length = 1060

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 130/1022 (12%), Positives = 292/1022 (28%), Gaps = 109/1022 (10%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
            +  ++V+   +   +P   + V +   +++A QELR        +++T  P+  +     
Sbjct: 42   IVESVVDRIDHRGTDP---SRVLVLTFSRKAAQELRERITARL-RRTTREPLALTFHSYA 97

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                  +     +L P      RLL     ++  R  L     D   + P          
Sbjct: 98   YALIRREFQRMGDLPP------RLLSGPEQLMEVRELLRGEALDGAADWPER-LRPALET 150

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
               A+ L D +   +      ++L AL  ++    W+ AA FL   +  +    V     
Sbjct: 151  RGFAEELRDFLMRAQERGMGPDELAALGRDRDRDDWVAAAGFLDRYTGRFDIAPVPTLNY 210

Query: 206  SPVGY--QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
            + +       L         +     + +     + PA   L+  +A   +G  ++   D
Sbjct: 211  AELVRVAANLLSDPGVRERERAAHEAVFVDEYQDTDPAQEELLRALAG--DGRDLVAVGD 268

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +     +           +          +  L   R   + L + S  +  R
Sbjct: 269  PDQSIYAFRGAEVRGILDFPRRFPTA----RRTEAPVVALRTCRRSGRALLSASRGLTRR 324

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
                    LP   S   + +   +  P       +V ++ AD+  +EA  IA  LR +  
Sbjct: 325  --------LPAVASARGHVNEHRDLTPAEGVPDGEVRVLLADSAAQEAAVIADTLRRAHL 376

Query: 384  ENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLN--A 436
             +       + L+ +       ++  LT   + + + A   P++       + +L+    
Sbjct: 377  VDGVPWSDMAVLVRSSTRQLPVLRRALTAASVPVAVGADDLPVAAEPIVRPMLALIRYGL 436

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                 D  A   L+  P  +                 +    +  ++          +  
Sbjct: 437  APAELDEDAARELLTSPFGEADTVRLRRLVRALRRLDLDRAHDGGAHGGAPEGDASREGA 496

Query: 497  ATQK------------NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              ++            +    P   + +  E    A  +   +             +   
Sbjct: 497  REERSGAYRPSAQLLVDALRDPAELTLVDPEIAAPATRVAQALRTVRDLNARGADAEQVL 556

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                  S      +               +L         ++ +   +  GS     A  
Sbjct: 557  WELWRDSGLADRLLRASLAGGRRGAAADRDLDAVVALFESAARYCDRLPPGS----PAGF 612

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
              D+  + I G+++  +  +   + IL    S+ L +  +++ G  EG WP    +   L
Sbjct: 613  LEDLAAQEIPGDSLAERAPEGEAVRILTAHRSKGLEWGLVVVAGAQEGDWPDLRLRGSLL 672

Query: 665  SRVMQSDLNLKTAEKY---------IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
                  D ++ +A+             +    +      R  +   ++   +     SR+
Sbjct: 673  GVEELVDTDVHSADSSGAALASKLLDEERRLFYVALTRARRTLVVTAVGGEDTDERPSRF 732

Query: 716  LQR------------LLVLGGTDFFDNLKK-----------RGQCYLDWTRKLDYTTK-Q 751
            L              L  L       +L+            R        R  +   +  
Sbjct: 733  LNEMGVGEPEPVSTGLRWLSLPSLVADLRSVVTDPGAPEPLREAAATHLARLAEEGVRGA 792

Query: 752  PHYKRPKPFPPLEAQP-------RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
               +     P  + +P          S S+++   N        R               
Sbjct: 793  DPAEWYALTPFTDDRPLAEEEDTIRVSPSQVESFTNCQLRWLLERAAGA----------S 842

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
              D  +    ++  +       +TP+        I +  +            R     + 
Sbjct: 843  SGDSASALGTVVHAVAVLVAQGSTPDEISGRMDEIWADLDFGGPWQARAQ--RDRADTMV 900

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924
               ++ E    +  E +      ++ +   GI +TG  DR++    G   + D KTG N 
Sbjct: 901  RKLVDWEAA--NDRELVVTEEGFRVDV--GGIEITGRVDRLERDDQGRAVVVDIKTGKN- 955

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
              +       PQL +   A+  G+F+++   +      +++ +K +              
Sbjct: 956  --KADDLARHPQLGVYQMAVLKGAFAKLGLTEPGGAALVQVGEKIQRAREQPQPPLSEDP 1013

Query: 985  EL 986
            + 
Sbjct: 1014 DP 1015


>gi|253568130|ref|ZP_04845541.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842203|gb|EES70283.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 954

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 140/1046 (13%), Positives = 288/1046 (27%), Gaps = 172/1046 (16%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L+   +  P KRA           +  +    P   S+ D+  +           L   
Sbjct: 19   DLSRTVLVFPNKRANLFFNEYLAGESD-QPIWSPAAMSISDLFRKLSVQKAGDPIRL--- 74

Query: 103  VSNIQRLLELARLILIWRNK----LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
                     +  L  ++R +            + E  +S        +  A  L   +  
Sbjct: 75   ---------VCELYKVFREETESQETLDDFYFWGELLISDFDDVDKNLVDADKLFSNLQD 125

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN---ASSPVGYQIALM 215
            ++     +E L   + E           F +  S      L E                 
Sbjct: 126  LKNLMDDYEFLDKEQEE-------AIQQFFQNFSIERRTVLKEKFISLWDKLGTIYHRYR 178

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
               AE                  I     L   V         L          I+    
Sbjct: 179  ENLAEL----------------GIAYEGMLYRNVIEQ------LDTTRLKYDKYIFVGFN 216

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
              +   T          +       D    K+      G   N    R         P +
Sbjct: 217  VLNKVETKFFQLLQDADKAMFYWDYDLFYTKQIAKHEAGEFINRNLKR--------FPNE 268

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--DENKKKSALIT 393
              +     + +           ++  I A  E  +A  +   ++ +L     +K++A++ 
Sbjct: 269  LPESCFDTLRKP---------KNIRYISASTENAQARFLPEWVQSTLSTANEEKENAVVL 319

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAI 446
             +  L   V   + +   N++I+ G PL+ T   S + + +               +  +
Sbjct: 320  CNEALLLPVLHSIPQEVKNVNITMGFPLAQTPVYSFINAAMELQTNGYRTATGRFTYETV 379

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            + ++KHP  +                    R    +     L S +              
Sbjct: 380  SAILKHPYTRQLSINAEPLE----------RELTKTNRFYPLPSELKM------------ 417

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                      +     L D++ + I  +      ++                        
Sbjct: 418  DDFLIKLFTPRSGIKELCDYLTELIKDISLLYREESEYNDIF------------------ 459

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                         +  T  +    +IET   +         ++++++    +    E + 
Sbjct: 460  ----NQLYRESLFKSYTTINRLYSLIET-GELNVRTDTLRRLVSKVLTASNIPFHGEPAI 514

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             + ++G LE+R L+F  +IL  LNEG  PK+   + F+   ++    + T E      A+
Sbjct: 515  GMQVMGVLETRNLDFRNIILLSLNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHKNAVYAY 574

Query: 687  DFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
             F        ++    +   N       SR++ +LLV G         + GQ     T  
Sbjct: 575  YFYRLIQRAENITLLYNTSSNGLNRGEESRFMLQLLVEGPHKITREYLEAGQSPQGTTDI 634

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                T +   +    +     Q    S S +   ++     Y R + +L        + D
Sbjct: 635  SIEKTPEVFERLRCSYDCSNPQSYILSPSALNAYLDCRLKFYYRYVARLKAPDEVSAEID 694

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF-------------------EK 845
                GT+FH                     +++++ +                     ++
Sbjct: 695  SALFGTIFHLSAQLAYTDLTANRKIIQKEELERLLRNEVKLQNYVDLAFKQELFKVPADE 754

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI----ESIGIHLT 899
            +     + +I   +        L ++ +  +  E + +  P   K+ I      I   L 
Sbjct: 755  KPEYNGVQLINSKVIVSYLKQLLRNDLQ-YAPFEMVAMEKPVAEKITIQTGQGPITFRLG 813

Query: 900  GFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDP---------QLSLEAAALKAGSF 949
            G  DR+D  K   + I DYKTG +P      ++L  P         Q  L AA +     
Sbjct: 814  GTIDRMD-AKDTTLRIVDYKTGGSPKTPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQS 872

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQ 1002
             ++      +L YI          +    +               ++  + L  ++  + 
Sbjct: 873  LKVAP----SLLYIHRAASESYSPVIEMGEPRQPKIPVNNFAFFEDEFRERLQRLLKEIF 928

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028
            +  +PF        K     ++  + 
Sbjct: 929  DENEPFT--QTEDTKKCAYCDFKAIC 952


>gi|282858263|ref|ZP_06267449.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
 gi|282588972|gb|EFB94091.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
          Length = 964

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 144/1078 (13%), Positives = 307/1078 (28%), Gaps = 191/1078 (17%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +   LLN             P  LA + +  P KRA   L  E   I+       P
Sbjct: 4    FLSYVAKDLLNKY-----------PNGLARIAVVFPNKRAALFLNQEIARISDS-PVWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
               ++ +   E+ T  +  S      L+    +I +  E       W   L     D+  
Sbjct: 52   AYITISEFFREQSTLTVSDSIKNICILHKVYMDITKKTETLDQFYGWGELLLADFDDIDK 111

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
                            A+ +  ++    +  K+ E L  L  E+                
Sbjct: 112  NLAP------------AEKVFGLL----SANKEMESLDYLTPEQVAE-----------LQ 144

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            K +T    + +         +L +   E   K                   R + T    
Sbjct: 145  KVFTNINTDED---------SLRKRFHEFWNKLF----------DIYTEYKRRLRTQGMA 185

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
              G +    ++ +            +              Q    +L  FL+   +    
Sbjct: 186  YEGMLYRDVIENN----------NLTLPYDRYIFIGFNVLQQVEQRLFTFLNEADKAAFY 235

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                +  +              +       D       N+     D++ I +  E  +A 
Sbjct: 236  WDYDNYYLKTGREAGRYIQRWLERFPNELKDNDHTIFSNL-DRDKDISFIASPTENMQAR 294

Query: 373  SIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
             I   L+ +    + +K+A++  D NL + V   +      ++++ G PL  +L SS +T
Sbjct: 295  YITQWLKENDRYLDGRKTAIVLCDENLLQTVIHCIPTEVETLNVTTGYPLQQSLISSFVT 354

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
             ++                          E+          L          +  +L   
Sbjct: 355  QIIKLQVDGYS----------------LTEQRFRLRYANRVLRHPYAKYVWSNAEELLQQ 398

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            +      ++   +V          D +  +  V+ +   I  +      +       S+ 
Sbjct: 399  I-----NEEKQFYVLWEGMDYHPHDAQNMLAFVEWLANIIRQVGINGRTQADPLFQESVF 453

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                L    +  + + E                             +  + I +  ++ +
Sbjct: 454  RMYTLLSKFVDLMTVQEDGSYY------------------------LDHDIIIFRRLLVQ 489

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            L +  +V    E +  + I+G LE+R L+FD +++   NEG  PK      F+   ++  
Sbjct: 490  LTNATSVPFHGEPAQGVQIMGVLETRNLDFDHVLILSCNEGNMPKGVDDASFIPHAIRHA 549

Query: 672  LNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFD 729
              L T    I   ++ F         +    +           SR++ + +V      + 
Sbjct: 550  FELTTVNNKISIFSYYFHRLIQRASDVTILYNNSTQGIKTGEMSRFMLQFMVE-----WT 604

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
              +++   Y+    +  +        + +           +S + I   I  P   Y + 
Sbjct: 605  KTERKIHRYVLKAGQEQHNFIAEPITKDRRVMAKLLHISKFSPTAINTFIACPVKFYYKY 664

Query: 790  ILKLDFIPHFKKD-PDRTDRGTLFHNIITELIKKRINKNTPEIN---------HLMKQII 839
            ++ +D      +D  D    G +FH     + K                    +++  II
Sbjct: 665  VVGIDTQDIVDEDSIDNRVFGNIFHKAAELMYKDIFKGEEVSAATIGTILAKPNMLNSII 724

Query: 840  DSHFEKENLPP------------HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF----V 883
            D     E                 + ++ + +  K     L  ++   + I+ +     V
Sbjct: 725  DQAIASELFNRKDFLKGNKLNLNGLQLLNKEVIKKYLLQLLRLDQA-VAPIKVLAHEFDV 783

Query: 884  NIPAKMAIESIGI--HLTGFADRIDL----LKS----GFVDITDYKTGDNPKK--ETAQK 931
                ++ I        + G  DR+D+    L        + + DYKTG    K       
Sbjct: 784  EDDVEVNIAGKLYKKRVGGRVDRLDMATYALGDHTTIKRLRVVDYKTGRAEAKPMPDIPS 843

Query: 932  LIDPQLS-----------LEAAALKAGSF--------SQIDCRK---VANLFYIRLKQKF 969
            +  P+L            L +  +             +  +         L +I+   K 
Sbjct: 844  IFSPELLDKKSDYVMQSMLYSLLMAENKVKIQNGILPANFNPHHLPVTPALLFIQYASKK 903

Query: 970  KIDCIT--NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
                I   + ++     +  ++ +++L  ++  L +  +PF     L  K      + 
Sbjct: 904  DYSPIVCIDKEEVTDVSKYHKEFMESLASVLESLYDETKPFTPTDNL--KLCGYCPFK 959


>gi|29346467|ref|NP_809970.1| hypothetical protein BT_1057 [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338363|gb|AAO76164.1| putative exonuclease [Bacteroides thetaiotaomicron VPI-5482]
          Length = 954

 Score =  255 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 144/1074 (13%), Positives = 297/1074 (27%), Gaps = 183/1074 (17%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
              F + +   L      +           L+   +  P KRA           +  +   
Sbjct: 2    QSFLQLVAHDLYAKIGND-----------LSRTVLVFPNKRANLFFNEHLAGESD-QPIW 49

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK----LPDIIKDL 130
             P   S+ D+  +           L            +  L  ++R +            
Sbjct: 50   SPAAMSISDLFRKLSVQKAGDPIRL------------VCELYKVFREETESQETLDDFYF 97

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            + E  +S        +  A  L   +  ++     +E L   + E           F + 
Sbjct: 98   WGELLISDFDDVDKNLVDANKLFSNLQDLKNLMDDYEFLDKEQEE-------AIQQFFQN 150

Query: 191  ASKYWTERLVELN---ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
             S      L E                    AE                  I     L  
Sbjct: 151  FSIERRTVLKEKFISLWDKLGTIYHRYRENLAEL----------------GIAYEGMLYR 194

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             V         L          I+      +   T          +       D    K+
Sbjct: 195  NVIEQ------LDTTRLKYDKYIFVGFNVLNKVETKFFQLLQDADKAMFYWDYDLFYTKQ 248

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                  G        R++ +  + LP                 +  +   ++  I A  E
Sbjct: 249  IVKHEAGE----FINRNLKLFPNELPESCF-------------DTLRKPKNIRYISASTE 291

Query: 368  REEAISIAIALRMSL--DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
              +A  +   ++ +L     +K++A++  +  L   V   + +   N++I+ G PL+ T 
Sbjct: 292  NAQARFLPEWVQSTLSTANEEKENAVVLCNEALLLPVLHSIPQEVENVNITMGFPLAQTP 351

Query: 426  HSSILTSLLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
              S + + +               +  ++ ++KHP  +                    R 
Sbjct: 352  VYSFINAAMELQTNGYRTATGRFTYETVSAILKHPYTRQLSINAEPLE----------RE 401

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
               +     L S +                        +     L D++ + I  +    
Sbjct: 402  LTKTNRFYPLPSELKM------------DDFLIKLFTPRSGIKELCDYLTELIKDISLLY 449

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
              ++                                     +  T  +    +IET   +
Sbjct: 450  REESEYNDIF----------------------NQLYRESLFKSYTTINRLYSLIET-GEL 486

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                     ++++++    +    E +  + ++G LE+R L+F  +IL  LNEG  PK+ 
Sbjct: 487  NVRTDTLRRLVSKVLTASNIPFHGEPAIGMQVMGVLETRNLDFRNIILLSLNEGQLPKSG 546

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWL 716
              + F+   ++    + T E      A+ F        ++    +   N       SR++
Sbjct: 547  GDSSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLLYNTSSNGLNRGEESRFM 606

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
             +LLV G         + GQ     T      T +   +    +     Q    S S + 
Sbjct: 607  LQLLVEGPHKITREYLEAGQSPQGTTDISIEKTPEVFERLRCSYDCSNPQSYILSPSALN 666

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEIN 832
              ++     Y R + +L        + D    GT+FH                    ++ 
Sbjct: 667  AYLDCRLKFYYRYVARLKAPDEVSAEIDSALFGTIFHLSAQLAYTDLTANRKIIQKEDLE 726

Query: 833  HLMKQII-----------DSHF----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
             L++  +              F    +++     + +I   +        L ++ +  + 
Sbjct: 727  RLLRNEVKLQNYVDLAFKQELFKVPADEKPEYNGVQLINSKVIVSYLKQLLRNDLQ-YAP 785

Query: 878  IEKIFVNIPA--KMAI----ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQ 930
             E + +  P   K+ I      I + L G  DR+D  K   + I DYKTG +P      +
Sbjct: 786  FEMVAMEKPVAEKITIQTGQGPITLRLGGTIDRMD-AKDTTLRIVDYKTGGSPKTPANIE 844

Query: 931  KLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
            +L  P         Q  L AA +      ++      +L YI          +    +  
Sbjct: 845  QLFTPSETRPNYIFQTFLYAAIMSRQQSLKVAP----SLLYIHRAASESYSPVIEMGEPR 900

Query: 982  SADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                         ++  + L  ++  + +  +PF        K     ++  + 
Sbjct: 901  QPKIPVNNFAFFEDEFRERLQRLLKEIFDENEPFT--QTEDTKKCAYCDFKAIC 952


>gi|260170421|ref|ZP_05756833.1| hypothetical protein BacD2_01003 [Bacteroides sp. D2]
 gi|315918777|ref|ZP_07915017.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692652|gb|EFS29487.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 959

 Score =  255 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 138/1046 (13%), Positives = 299/1046 (28%), Gaps = 167/1046 (15%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L+   +  P KRA           +  +    P   S+ D+ ++           L   
Sbjct: 19   DLSRTALIFPNKRANLFFNEYLAGESD-QPIWSPAAMSISDLFQKLSVQKSGDPIRL--- 74

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                     +  L  +++ +                  +  +  +  + L    D ++  
Sbjct: 75   ---------VCELYKVFKEETQSQ-------------ETLDDFYFWGELLISDFDDVDKN 112

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                + L +                LK     +      L+       Q        E  
Sbjct: 113  MVDADKLFS------------NLQDLKNLMDDY----EFLDKEQEEAIQQFFQNFSIEKR 156

Query: 223  MKGTKGPIIIAGSTGSI-PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +  +  I +    G+I       ++ +     G +    ++          +       
Sbjct: 157  TELKEKFISLWDKLGTIYHRYRTNLTELGIAYEGMLYRNVIEQ---------LDTDQLKY 207

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                                 L    + +       +  Y + +   ++      +    
Sbjct: 208  DKYIFVGFNVLNKVENDFFSKLKDAGKALFYW--DYDIFYTQQIKKHEAGEFLKRNLEEF 265

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS-------ALITA 394
             + L     N  K    +  I A  E  +A  +   ++   D++ + +       A++  
Sbjct: 266  PNELPENFFNSFKEPKKIRYISASTENAQARFLPEWIKAMTDDHSQIAEEKEKENAVVLC 325

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIA 447
            +  L   V   + +   N++I+ G PL+ T   S + + +               + A++
Sbjct: 326  NEALLLPVLHSIPQEVKNVNITMGFPLAQTPVYSFINAAMELQTNGYRSDTGRFTYEAVS 385

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             ++KHP  +       LS     LE    + N+      +LK                  
Sbjct: 386  AILKHPYTQ------QLSSHAGPLERELTQTNRFYPLPSELKQ----------------D 423

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                     +     L D++++ I  + T    +                          
Sbjct: 424  DFLTTLFTPRNGIKELCDYLIELIKYISTIYRKEGEY----------------------- 460

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
             +     L+ E   ++ + +           +         +IT+++    +    E + 
Sbjct: 461  -NDIFNQLYRESLFQSHTKINRLYSLIESGELNIRTDTLKRLITKVLTSSNIPFHGEPAI 519

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             + ++G LE+R L+F  LI+  LNEG  PK+   + F+   ++    + T E      A+
Sbjct: 520  GMQVMGVLETRNLDFRNLIILSLNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHKNAVYAY 579

Query: 687  DFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
             F        ++    +   +       SR++ +LLV G  D      + GQ        
Sbjct: 580  YFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEI 639

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                T +   +  + +          S S +   ++     Y R +  L        + D
Sbjct: 640  RVEKTPEVLRRLYRAYDSTHPNSVILSPSALNAYLDCRLRFYYRYVAGLKTPDEVSAEID 699

Query: 805  RTDRGTLFHNIITELIKKRINKN----TPEINHLMKQ------IIDSHFEKENL------ 848
                GT+FH                    ++  L++        +D  F++E        
Sbjct: 700  SALFGTIFHLSAQSAYTDLTAAGKTIQKEDLERLLRNDVKLQSYVDQAFKEELFKVSPEE 759

Query: 849  ---PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI--ESIGIHLT-- 899
                  I +I   +        L ++ +  +  E + +      ++ I        L   
Sbjct: 760  KPEYNGIQLINSKVIVSYLKQLLRNDLQ-YTPFEMVAMEKKVSEEITIQTGQGPFTLRLG 818

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSF 949
            G  DR+D  K   + I DYKTG +PK     ++L  P         Q  L AA +     
Sbjct: 819  GTIDRMD-AKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQS 877

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQ 1002
              +       L YI          +    +               ++  + L  ++  + 
Sbjct: 878  LMVAPA----LLYIHRAASENYSPVIEMGEPRKPKIPVNNFAFFEDEFRERLQALLEEIF 933

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028
            + E+PF        K     ++  + 
Sbjct: 934  SEEEPFT--QTEDTKKCSYCDFKAIC 957


>gi|313675648|ref|YP_004053644.1| hypothetical protein Ftrac_1546 [Marivirga tractuosa DSM 4126]
 gi|312942346|gb|ADR21536.1| hypothetical protein Ftrac_1546 [Marivirga tractuosa DSM 4126]
          Length = 941

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 148/1059 (13%), Positives = 295/1059 (27%), Gaps = 171/1059 (16%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F  E+   L      +           +++ T+  P +RA              +    P
Sbjct: 5    FLEELAHTLYTQLGKD-----------ISNYTVIFPNRRAGLFFNRAL-RKLINEPIWAP 52

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL----LELARLILIWRNKLPDIIKDLYP 132
               ++ D V +K    +    +L   +  + +      E       W + L     D+  
Sbjct: 53   EAMAIEDFVRQKSNYAVPDQLSLVFSLHEVFQKHAPFKEDFEQFYFWGDMLVKDFNDVDH 112

Query: 133  ESPLSLP--ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                + P   +      LA       D ++  EK W+   A K +     +    + L  
Sbjct: 113  YMADARPLFANLLEWKKLADTDFLTEDQVQLIEKFWKSFEA-KPKDAQEKFARNWNILFP 171

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
              + + ++L   N +                 ++ +   +I AG          ++S   
Sbjct: 172  VYQDFKQKLKAENQAYNGMLYRDYAEKLKAGELQISVH-LIFAGFNALTKTEEIIIS--E 228

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                GA +   +D +                                             
Sbjct: 229  AVKQGAQIYWDMDAYY-------------------------------------------- 244

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                                F       +      E     I K    + + E      +
Sbjct: 245  -------AAPENTMQEAGNFFREYSKHPILGKTFPEVLPDRIIKETPQINITEVKGNIAQ 297

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A  +   L     +  +K+A+I  D +L   V   L      ++++ G PL       ++
Sbjct: 298  AKFLGQLLSEQKIDQPEKTAIILGDESLLFPVLYALPEAIQKVNVTMGYPLRFASIYQLM 357

Query: 431  TSLLNAIFKL--------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
               L               +   +  ++KHP       +   ++  +      +R     
Sbjct: 358  NICLYLQKNKREETGKITFNHRDVLKILKHPFVGNLLGDVAKTKIHHIESNNIIR----- 412

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                                  +    S   EE+  L +L  D        L T     +
Sbjct: 413  --------------------LELRDLYSENEEENTLLEILFNDGSDNYFLYLRTILQYVH 452

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                  +  ++       +  +          L      +  + +   I           
Sbjct: 453  QEQIESTEQEFISEIYKQINQLEQIISEFKLVLDINAFIRLFNRIIQSIR---------- 502

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
                           V    E    + I+G LESR L+F+ +    ++E  +P       
Sbjct: 503  ---------------VPFSGEPLEGIQIMGVLESRNLDFENIYFLSMSEDNFPGGANNQS 547

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRLL 720
            F+   ++    L T E+     A+ F       +   +   S          SR+L +L 
Sbjct: 548  FIPYNIRKAYGLPTLEQRDAIYAYLFNRLLQRSNQLHLMYNSDNSGGKGGEPSRYLLQLQ 607

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
               G        +           +  T ++            E +    S S +K  +N
Sbjct: 608  YELGIQTQKVKLQSLNQDPQAASPVSITVEKNEAIWQILKSYNEKRF--LSASALKTYLN 665

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-----INHLM 835
                 Y R I  L       +D D  D G + H+++ +L    +N+         +   +
Sbjct: 666  CRLQFYFRYIAGLKERDEVSEDLDAADFGNILHHVMEKLYGSVLNQLLDANKIILLKKDI 725

Query: 836  KQIIDSHFEK---------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNI 885
             + I   F +         E      +II R +  ++    L ++ +I    ++K+    
Sbjct: 726  DKFIKEEFAELYGKKEKVSEFEFEGRNIIIRDVVKRMVVQILNYDAQIAPFTVKKVEGEY 785

Query: 886  PAKMAIESIG-IHLTGFADRIDLLKSGFVDITDYKTG----DNPKKETA-------QKLI 933
               +A+E    I L G  DR+D   +  + + DYK+G      P  E+        +   
Sbjct: 786  EFAIALEDGQKIRLQGSIDRLDEQGT-SIRVIDYKSGGDEVKFPDIESLFDRNHKDRNGA 844

Query: 934  DPQLSLEAAA-LKAGSFSQIDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEK 989
              Q  + +   +K+  F +          Y         F      N K+  +A+ L E+
Sbjct: 845  AMQTLIYSYLFIKSDEFEEGKNVVPG--LYNGKGIFNSDFSEKLKLNKKELNNAEVLMEE 902

Query: 990  SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
              K L  ++T +   EQ F        ++     Y  + 
Sbjct: 903  FEKGLKNLLTEIFISEQAF--EQTEKLENCTYCAYKTIC 939


>gi|313203010|ref|YP_004041667.1| hypothetical protein Palpr_0523 [Paludibacter propionicigenes WB4]
 gi|312442326|gb|ADQ78682.1| hypothetical protein Palpr_0523 [Paludibacter propionicigenes WB4]
          Length = 972

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 141/1044 (13%), Positives = 304/1044 (29%), Gaps = 156/1044 (14%)

Query: 42   LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              +++++   P +RA    +    +I   K    P I ++ +                  
Sbjct: 18   ESISNLSFVFPNRRAGLFFQRYISQIAA-KPIFSPEILTINECFSMASQWQTAD------ 70

Query: 102  PVSNIQRLLELARLILIWRN----KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID 157
                  RL  L RL  I+               + E  LS           A+ L   I 
Sbjct: 71   ------RLSNLFRLYRIYIEQSGSDESFDSFVFWGEMLLSDFDDVDKYRVDARQLFTNIT 124

Query: 158  IIETEEKKWEDLHALKNEKYGMWWL---------------LAADFLKIASKYWTERLVEL 202
             ++  ++ +      + E    +W                     L    + +   L+  
Sbjct: 125  ELKQIDQMFNIFTEKQVEAIRQFWSNFVPVTEGKSQEDFIATWKILLPVYEQFRAELIAE 184

Query: 203  NASSPVGYQIALMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
            N ++       +           +  +   +  G     P    LM+ +      A    
Sbjct: 185  NTATEGMICRDVADRLRAKEPVSELEEKQFVFIGFNALNPCERTLMAELKKRGQ-ADFYW 243

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              D             +  +  +S         +                  +      +
Sbjct: 244  DYD---------AAELRDADNQASRFYAENIHLFPSK-------------YEIDADVESL 281

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
              + + +         +    + + +              LI  D               
Sbjct: 282  QEKEIELIAVPSAVGQTKQVYSILNKLYPTENDDKDKS-QLITTDY-------------Q 327

Query: 381  SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                N   +A++  D +L   +   L      ++++ G PL +T  S ++  +     ++
Sbjct: 328  LPTTNWINTAVVLPDESLLVPLLHSLPAQIGKVNVTMGFPLKSTPVSGLIEHIFELQCRM 387

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
                   +     ++     +       +    +  +  +N++  +D   L  + +    
Sbjct: 388  RTSGDRISFYHQTVSNILNHQYIALLCGDEANRITHQMAENNWIYIDADELKRNELLATI 447

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                                   + ++L  +  L       +    N  +          
Sbjct: 448  FVPQTDT-------------QTFLPYLLHILRTLQNGWQQASGEEHNYQL---------- 484

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                           +  +   T++ +   +      +  +    + +  +L  G T+  
Sbjct: 485  ------------ECDFLYQYYVTINRMSDIMKAKPMDVGMSMETLVRLTRQLTSGITIPF 532

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
              E    L ++G LE+R L+F+ LI+   NEGV+P  ++ N F+   ++    L T E  
Sbjct: 533  IGEPLDGLQVMGVLETRGLDFENLIITSFNEGVFPAKSSNNSFIPYNLRRGFELPTTEHQ 592

Query: 681  IGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                A++F       + + +    R   + T   SR++ +L                  +
Sbjct: 593  DAITAYNFYRLIHRAKRIYFLYDSRTEGMQTGEVSRFMHQLHYHYDVKVQKKTVSFDIGF 652

Query: 739  -LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                  ++D T      ++   F   E      S S I   I+ P   Y  ++  ++   
Sbjct: 653  GSPQAIQIDKTAAV--MEKLLRFTSSEKYSPALSASSINTYIDCPLQFYLTKVENVEQTD 710

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKN--TPEINHLMKQII-----------DSHFE 844
               +  +    GTLFH ++  L      +   + + + L+K  +             +F+
Sbjct: 711  EVAETVEANMFGTLFHKVMENLYLPYKGQLMQSDDFDSLIKNTLKIDLEINSAFSREYFK 770

Query: 845  KEN----LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI----GI 896
            K+N         +++   +  K     L+ ++K  +  + I       +         G+
Sbjct: 771  KKNNAVVQLEGNNLLIASVLRKYILQVLKIDQK-YAPFKYIGSEEKFTIKYPIQNTKTGV 829

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNP----KKETAQKL-------IDPQLSLEAAALK 945
            ++ GF DRID  K G + I DYKTG         +   +           Q  L     +
Sbjct: 830  NIKGFIDRIDE-KEGRLRILDYKTGSGKLDFRNLDEVFEHDKDNRPKFVLQTFLYCILYQ 888

Query: 946  -AGSFSQIDCRKVANLFYIRLKQKFKIDCIT----NDKKKYSADELSEKSLKNLIEIVTL 1000
                 S +       +FYIR   K   D +     + +K    ++ +E   K+L   +  
Sbjct: 889  DENKVSNLTP----GIFYIRDLFKEDFDTVLINKESKEKVTDFEQYNEAFRKHLTTCLDE 944

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEY 1024
            + N E PF     L  K      Y
Sbjct: 945  MFNPEVPFTQTSNL--KVCQYCPY 966


>gi|288800137|ref|ZP_06405596.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
            F0039]
 gi|288333385|gb|EFC71864.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
            F0039]
          Length = 958

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 146/1073 (13%), Positives = 301/1073 (28%), Gaps = 184/1073 (17%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +   ++                 LA + I  P KRA   +          K    P
Sbjct: 4    FLEAVAKDIIAKYGTN-----------LADIAIVFPNKRAALFMNEYLAR-IANKPLWSP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               ++ D+        +     L            +  L   +                 
Sbjct: 52   SYLTISDLFYRNTDLVVGDQIKL------------VCDLHRSFTECT------------- 86

Query: 137  SLPISPANAIWLAKNLADIIDI----IETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
             L  +  +     + L    D     +    K + ++  L       +        +I  
Sbjct: 87   GLDETLDHFFNWGQLLLSDFDDVDKNMAEASKVFANIQNLHELDDISYLSEQQK--EIIK 144

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            K++       N  S +  +   + ++ E +       +   G +        +   V   
Sbjct: 145  KFFINFKDNHN--SELKQRFLNLWSKLEDIYNNFNARLKQQGIS----YEGAIYREVIEQ 198

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
             N       LD      ++                     Q    +L + +  + +    
Sbjct: 199  KN-------LDLPHKHYLFVG---------------FNLLQKVEQELFNIIKKEGKAKFY 236

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                                          D   + I N  K   D+  I A     +A 
Sbjct: 237  WDFDKYYTINNQQEAGYYIKQYLAIYPNELDNSNDSIYNCFKKEKDITYISATTNNIQAR 296

Query: 373  SIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            +IA  L+ +   +  K + ++  D  L   V   L      ++I+ G PL  T  SS++ 
Sbjct: 297  NIADWLQQNDRIKAGKDTVIVLCDETLLPTVLHCLPEEVDKVNITMGFPLQQTHISSLVK 356

Query: 432  SLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
            SL+                  +  ++ HP   +   +         L +           
Sbjct: 357  SLITLQLIGRINNEDRFRLKYVDEILNHPYCHYISEKNK------ELYVSLHEKRNYYPT 410

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              +L           + +  +    S  +   +     LVD I+  +  +       +  
Sbjct: 411  SKEL-----------QIDDCLTKVFSSPANIHETHFASLVDWIIDIVELIGNNTKEADDP 459

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                S+     L       +                               + +  + + 
Sbjct: 460  LLKESVFRMFTLLNRVSSLI-----------------------------KSNDLIVDLVT 490

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
               +I + I   T+    E    + I+G LE+R L+F  +++   NEG  PK+   + F+
Sbjct: 491  LKGVIDQFIQSTTIPFHGEPIEGIQIMGVLETRNLDFKHILMISCNEGNMPKSLHDSSFI 550

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRENNIP-TIASRWLQRLLVL 722
               ++   NL   +  I   A+ F         +  + +        +  SR++ +L+V 
Sbjct: 551  PYSIRKAYNLTIIDHKIAIFAYYFYRLIQRPQDITISYNNATAFGQNSEMSRFMIQLMVE 610

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
                         Q            T+     + K    +       S S I + +  P
Sbjct: 611  SKHSIKRQALLTNQYL--------EPTQNKCISKSKEIMNILNGIEKISPSAINEYLKCP 662

Query: 783  YAVYARRILKLDFIP-HFKKDPDRTDRGTLFHNIITELIKKRINKNT----------PEI 831
            +  Y  +IL +       +   D    G ++H     + KK ++KN            + 
Sbjct: 663  FKFYYSKILGIREPEIEQEGALDNRTYGNVYHRSAELIYKKIMDKNNVVSKESIEKIRKS 722

Query: 832  NHLMKQIIDSHFEKENL-------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIF 882
               ++Q +D  F +           P  + +       I +  ++  ++ +  + I    
Sbjct: 723  RATIEQCVDEAFSELVFKTTSSKYRPKYNGLQLVNRESIINYLIKMLQQDEASAPITIKG 782

Query: 883  VNIPAKMAI------ESIGIHLTGFADRIDLLK---SGF-VDITDYKTGDNP--KKETAQ 930
            + +     I      E   + + GF DR+D ++    G  + + DYKTG       +  +
Sbjct: 783  LELRINSEISFISNNEKRSLTIKGFIDRLDEVRHESEGRMIRVIDYKTGRPSLKHPKDVE 842

Query: 931  ------------KLIDPQLSLEAAALKAGSFSQIDCRKVA-NLFYIR-LKQK-FKIDCIT 975
                             Q  L +  ++       +   V+  L YI+ +  +  KI    
Sbjct: 843  DVFNRTKIHETKADYYLQTMLYSNVVRDNIELNKEQLPVSPCLVYIQNIGSETNKIHLEL 902

Query: 976  NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             ++  Y         + NL  ++  + N E PF +    S        Y  L 
Sbjct: 903  KNEPIYDIKLYQIDFMANLQGVLGEIFNSEIPFTATQDTS--WCKFCTYSKLC 953


>gi|295084360|emb|CBK65883.1| RecB family exonuclease [Bacteroides xylanisolvens XB1A]
          Length = 959

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 140/1046 (13%), Positives = 303/1046 (28%), Gaps = 167/1046 (15%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L+   +  P KRA           +  K    P   S+ D+ ++           L   
Sbjct: 19   DLSRTVLVFPNKRANLFFNEYLAGESD-KPIWSPAAMSISDLFQKLSVQKSGDPIRL--- 74

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                     +  L  +++ +                  +  +  +  + L    D ++  
Sbjct: 75   ---------VCELYKVFKEETRSQ-------------ETLDDFYFWGELLISDFDDVDKN 112

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                + L +                LK     +      L+       Q        E  
Sbjct: 113  MVDADKLFS------------NLQDLKNLMDDY----EFLDKEQEEAIQQFFQNFSIEKR 156

Query: 223  MKGTKGPIIIAGSTGSI-PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +  +  I +    G+I       ++ +     G +    ++          +       
Sbjct: 157  TELKEKFISLWDKLGTIYHRYRANLTELGIAYEGMLYRNVIEQ---------LDTDQLKY 207

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                           +     L    + +       +  Y + +   ++      +    
Sbjct: 208  DKYIFVGFNVLNKVESDFFRKLKDAGKALFYW--DYDIFYTQQIKKHEAGEFLKRNLEEF 265

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS-------ALITA 394
             + L     N  K    +  I A  E  +A  +   ++   +++ + +       A++  
Sbjct: 266  PNELPESFFNTFKEPKKIRYISASTENAQARFLPGWIKAITNDHSQITVEKEKENAVVLC 325

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIA 447
            +  L   V   + +   N++I+ G PL+ T   S + +++               + A++
Sbjct: 326  NEALLLPVLHSIPQEVKNVNITMGFPLAQTPVYSFINAVMELQTNGYHSDTGRFTYEAVS 385

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             ++KHP  +       LS     LE    + N+      +LK                  
Sbjct: 386  AILKHPYTQ------QLSSHAGPLERELTQTNRFYPLPSELKQ----------------D 423

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                     +     L D++++ I  + T    +                          
Sbjct: 424  DFLTTLFTPRNGIKELCDYLIELIKNISTIYRKEGEY----------------------- 460

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
             +     L+ E   ++ + +           +         +IT+++    +    E + 
Sbjct: 461  -NDIFNQLYRESLFQSHTKINRLYSLIESGELNIRTDTLKRLITKVLTSSNIPFHGEPAI 519

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             + ++G LE+R L+F  LI+  LNEG  PK+   + F+   ++    + T E      A+
Sbjct: 520  GMQVMGVLETRNLDFRNLIILSLNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHKNAVYAY 579

Query: 687  DFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
             F        ++    +   +       SR++ +LLV G  D      + GQ        
Sbjct: 580  YFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEI 639

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                T +   +  + +          S S +   ++     Y R +  L        + D
Sbjct: 640  RVEKTPEVLRRIYRAYDSTHPNSLVLSPSALNAYLDCRLRFYYRYVAGLKTPDEVSAEID 699

Query: 805  RTDRGTLFHNIIT----ELIKKRINKNTPEINHLMKQ------IIDSHFEKENL------ 848
                GT+FH        +L          ++  L++        +D  F+KE        
Sbjct: 700  SALFGTIFHLSAQLAYTDLTATGKTIQKEDLERLLRNDVKLQSYVDQAFKKELFKVSPEE 759

Query: 849  ---PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI--ESIGIHLT-- 899
                  I +I   +        L ++ +  +  E + +      ++ I        L   
Sbjct: 760  KPEYNGIQLINSKVIVSYLKQLLRNDLQ-YTPFEMVAMEKKVSEEITIQTGQGPFTLRLG 818

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSF 949
            G  DR+D  K   + I DYKTG +PK     ++L  P         Q  L AA +     
Sbjct: 819  GTIDRMD-AKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQS 877

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQ 1002
              +       L YI          +    +               ++  + L  ++  + 
Sbjct: 878  LMVAPA----LLYIHRAASENYSPVIEMGEPRKPKIPVNNFAFFEDEFRERLQTLLEEIF 933

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028
            + E+PF        K     ++  + 
Sbjct: 934  SEEEPFT--QTEDTKKCSYCDFKAIC 957


>gi|160886080|ref|ZP_02067083.1| hypothetical protein BACOVA_04087 [Bacteroides ovatus ATCC 8483]
 gi|156108893|gb|EDO10638.1| hypothetical protein BACOVA_04087 [Bacteroides ovatus ATCC 8483]
          Length = 959

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 140/1046 (13%), Positives = 303/1046 (28%), Gaps = 167/1046 (15%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L+   +  P KRA           +  K    P   S+ D+ ++           L   
Sbjct: 19   DLSRTVLVFPNKRANLFFNEYLAGESD-KPIWSPAAMSISDLFQKLSVQKSGDPIRL--- 74

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                     +  L  +++ +                  +  +  +  + L    D ++  
Sbjct: 75   ---------VCELYKVFKEETRSQ-------------ETLDDFYFWGELLISDFDDVDKN 112

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                + L +                LK     +      L+       Q        E  
Sbjct: 113  MVDADKLFS------------NLQDLKNLMDDY----EFLDKEQEEAIQQFFQNFSIEKR 156

Query: 223  MKGTKGPIIIAGSTGSI-PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +  +  I +    G+I       ++ +     G +    ++          +       
Sbjct: 157  TELKEKFISLWDKLGTIYHRYRANLTELGIAYEGMLYRNVIEQ---------LDTDQLKY 207

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                           +     L    + +       +  Y + +   ++      +    
Sbjct: 208  DKYIFVGFNVLNKVESDFFRKLKDAGKALFYW--DYDIFYTQQIKKHEAGEFLKRNLEEF 265

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS-------ALITA 394
             + L     N  K    +  I A  E  +A  +   ++   +++ + +       A++  
Sbjct: 266  PNELPESFFNTFKEPKKIRYISASTENAQARFLPGWIKAITNDHSQITVEKEKENAVVLC 325

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIA 447
            +  L   V   + +   N++I+ G PL+ T   S + +++               + A++
Sbjct: 326  NEALLLPVLHSIPQEVKNVNITMGFPLAQTPVYSFINAVMELQTNGYRSDTGRFTYEAVS 385

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             ++KHP  +       LS     LE    + N+      +LK                  
Sbjct: 386  AILKHPYTQ------QLSSHAGPLERELTQTNRFYPLPSELKQ----------------D 423

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                     +     L D++++ I  + T    +                          
Sbjct: 424  DFLTTLFTPRNGIKELCDYLIELIKNISTIYRKEGEY----------------------- 460

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
             +     L+ E   ++ + +           +         +IT+++    +    E + 
Sbjct: 461  -NDIFNQLYRESLFQSHTKINRLYSLIESGELNIRTDTLKRLITKVLTSSNIPFHGEPAI 519

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             + ++G LE+R L+F  LI+  LNEG  PK+   + F+   ++    + T E      A+
Sbjct: 520  GMQVMGVLETRNLDFRNLIILSLNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHKNAVYAY 579

Query: 687  DFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
             F        ++    +   +       SR++ +LLV G  D      + GQ        
Sbjct: 580  YFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEI 639

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                T +   +  + +          S S +   ++     Y R +  L        + D
Sbjct: 640  RVEKTPEVLRRIYRAYDSTHPNSLVLSPSALNAYLDCRLRFYYRYVAGLKTPDEVSAEID 699

Query: 805  RTDRGTLFHNIIT----ELIKKRINKNTPEINHLMKQ------IIDSHFEKENL------ 848
                GT+FH        +L          ++  L++        +D  F+KE        
Sbjct: 700  SALFGTIFHLSAQLAYTDLTATGKTIQKEDLERLLRNDVKLQSYVDQAFKKELFKVSPEE 759

Query: 849  ---PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI--ESIGIHLT-- 899
                  I +I   +        L ++ +  +  E + +      ++ I        L   
Sbjct: 760  KPEYNGIQLINSKVIVSYLKQLLRNDLQ-YTPFEMVAMEKKVSEEITIQTGQGPFTLRLG 818

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSF 949
            G  DR+D  K   + I DYKTG +PK     ++L  P         Q  L AA +     
Sbjct: 819  GTIDRMD-AKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQS 877

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQ 1002
              +       L YI          +    +               ++  + L  ++  + 
Sbjct: 878  LMVAPA----LLYIHRAASENYSPVIEMGEPRKPKIPVNNFAFFEDEFRERLQTLLEEIF 933

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028
            + E+PF        K     ++  + 
Sbjct: 934  SEEEPFT--QTEDTKKCSYCDFKAIC 957


>gi|269958928|ref|YP_003328717.1| hypothetical protein ACIS_00878 [Anaplasma centrale str. Israel]
 gi|269848759|gb|ACZ49403.1| hypothetical protein ACIS_00878 [Anaplasma centrale str. Israel]
          Length = 937

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 154/1036 (14%), Positives = 320/1036 (30%), Gaps = 134/1036 (12%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             V T+  S  F   +    +   +                  + VP+    Q L  E  +
Sbjct: 15   RVLTVHCSESFVETVARYAIAHRIDA----------------VVVPSSTDAQLLSHEVSK 58

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
            +T   + +   I +   V           +   +  +S   +LL LA+ +  W       
Sbjct: 59   LTAHGANL--DILAFTSVD-------GCAATAYDASMSAAGQLLLLAQFVAQWNAAHRAD 109

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
                       L                      T     + L    +++         D
Sbjct: 110  YPLQIASELSLLLDEL-----------------HTNCVGPDALQVFGDDELSGR-CRMVD 151

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            FL     +W +       +        L+              +++AG       T  L 
Sbjct: 152  FLCDLVPWWEQERKSCGLAPSGCGIGPLVEGFERS-----GRRVMVAGIVFGKIFTRFLR 206

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              + +  +  IVLP +D  +    W T+             +S H QY + +LL  L + 
Sbjct: 207  LLMHSVSDAVIVLPYVDLGLSDREWQTL-------------HSEHYQYYVMQLLKDLGVG 253

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            R +V+RLG V        +   +                   +        D+ LI   +
Sbjct: 254  RNEVERLGQVKVNHVVERLFNFELTSH---------------LAMDYGTGKDIELIACSS 298

Query: 367  EREEAISIAIALR----MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL- 421
            E EEA+ +   L+     +    K + + I+     A+  +  +      I    G  + 
Sbjct: 299  EAEEAVKVVEILKSCTTEAHCGAKAEFSRISGWAASAKPTQTAVDVDKDTIRFLEGKSVT 358

Query: 422  --STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
               +   ++ + +LL       D+  I + +     +         +    L+   +R  
Sbjct: 359  FVGSDSLAARVDALLRIGANYCDYDEIISALVLCSIEVVVSSGDAVQLLCMLKHPLVRLG 418

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
             ++ +   L +    R+    + T           E+ +        +++ I+P++  + 
Sbjct: 419  YDADEYCKLLAEFEIRVVRGHSATGF-EAIGSAIREEFQQLEEFWRKVVEAISPMINVRE 477

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
                     +I +     V CL+ +      KL           + + FS        + 
Sbjct: 478  GS-------TIGEIAAAHVQCLERL----MNKLDTSECTHALNKICTFFSLFDNYCMGVA 526

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              ++     +  L+       +  K   + +           D  +L G +E  +     
Sbjct: 527  VFSLTSYKEVCTLLVRAFFTVERNKLFGVNLAT--------RDAAVLAGFSEAEFK--PR 576

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             +  L+   +  L L   E+Y G+  +        + L  T+S +   +      W++ L
Sbjct: 577  CSHLLNNWARERLGLPLLEEYCGRMMYVLYSFFYAKKLRITKSAKSFGVAVAEPIWIRYL 636

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS---EIK 776
              L        LK R + Y      +        Y+   P P L+ + +  S      + 
Sbjct: 637  TFL--------LKDRTERYAATQAVVGSNVVTDPYRASAPNPGLDVRKKAMSVLTAKAVD 688

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
             LI++PY  Y + ILK+                 + H I+ E +     +      +L+ 
Sbjct: 689  TLISNPYVFYVQYILKMFPTKTVNTQHLVRGFNIIAHKILREYLVSIGTEAGD--YNLLL 746

Query: 837  QIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
            +I    F+      P+  ++W   F +++ +F   + + +S+  +          + S  
Sbjct: 747  EIAKRQFDAIAVTHPYAHVLWWPKFKEMARNFFVVDSERRSAASRTESGKSFVWHV-SEE 805

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            I +    DR++ +K G V +   K G  P K   +           A + A   ++    
Sbjct: 806  IQVIARCDRVEYMKDGSVMVACNKVGAAPSKADMRCGFAS-----RAIVDAVCVAESTGA 860

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015
             VA+  Y ++             +     E+   + +   E++        PF       
Sbjct: 861  NVASFAYWKIAP-----WTVEVVQVEDCAEVIHAAKQGFKELLLRYAERMTPFSPR---- 911

Query: 1016 EKSNIQSEYDHLARVA 1031
            E  +  S Y+ L+R+ 
Sbjct: 912  EDFSTFSAYELLSRIR 927


>gi|237720846|ref|ZP_04551327.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449681|gb|EEO55472.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 959

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 140/1057 (13%), Positives = 300/1057 (28%), Gaps = 189/1057 (17%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L+   +  P KRA           +  K    P   S+ D+ ++           L   
Sbjct: 19   DLSRTVLVFPNKRANLFFNEYLAGESD-KPIWSPAAMSISDLFQKLSVQKSGDPIRL--- 74

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                     +  L  +++ +                  +  +  +  + L    D ++  
Sbjct: 75   ---------VCELYKVFKEETRSQ-------------ETLDDFYFWGELLISDFDDVDKN 112

Query: 163  EKKWEDLHA--------LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
                + L +        + + ++           +   +++    +E         +  L
Sbjct: 113  MVDADKLFSNLQDLKNLMDDYEFLDKEQE-----EAIQQFFQNFSIEK--------RTEL 159

Query: 215  MRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
                     K      +  + +A     I     L   V         L          I
Sbjct: 160  KEKFISLWDKLGTIYHRYRVNLAELG--IAYEGMLYRNVIEQ------LDTDQLKYDKYI 211

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
            +      +   +          +       D    ++      G                
Sbjct: 212  FVGFNVLNKVESDFFRKLKDAGKALFYWDYDIFYTQQIKKHEAGEFLKRNLE-------- 263

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS- 389
                        + L     N  K    +  I A  E  +A  +   ++   +++ + + 
Sbjct: 264  ---------EFPNELPESFFNTFKEPKKIRYISASTENAQARFLPGWIKAITNDHSQITV 314

Query: 390  ------ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK---- 439
                  A++  +  L   V   + +   N++I+ G PL+ T   S + +++         
Sbjct: 315  EKEKENAVVLCNEALLLPVLHSIPQEVKNVNITMGFPLAQTPVYSFINAVMELQTNGYRS 374

Query: 440  ---LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                  + A++ ++KHP  +       LS     LE    + N+      +LK       
Sbjct: 375  DTDRFTYEAVSAILKHPYTQ------QLSSHAGPLERELTQTNRFYPLPSELKQ------ 422

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                                +     L D++++ I  + T    +               
Sbjct: 423  ----------DDFLTTLFTPRNGIKELCDYLIELIKNISTIYRKEGEY------------ 460

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDG 615
                        +     L+ E   ++ + +           +         +IT+++  
Sbjct: 461  ------------NDIFNQLYRESLFQSHTKINRLYSLIESGELNIRTDTLKRLITKVLTS 508

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +    E +  + ++G LE+R L+F  LI+  LNEG  PK+   + F+   ++    + 
Sbjct: 509  SNIPFHGEPAIGMQVMGVLETRNLDFRNLIILSLNEGQLPKSGGDSSFIPYNLRKAFGMT 568

Query: 676  TAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKK 733
            T E      A+ F        ++    +   +       SR++ +LLV G  D      +
Sbjct: 569  TIEHKNAVYAYYFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQLLVEGPHDITREYLE 628

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
             GQ            T +   +  + +          S S +   ++     Y R +  L
Sbjct: 629  AGQSPQSTQEIRVEKTPEVLRRIYRAYDSTHPNSLVLSPSALNAYLDCRLRFYYRYVAGL 688

Query: 794  DFIPHFKKDPDRTDRGTLFHNIIT----ELIKKRINKNTPEINHLMKQ------IIDSHF 843
                    + D    GT+FH        +L          ++  L++        +D  F
Sbjct: 689  KTPDEVSAEIDSALFGTIFHLSAQLAYTDLTATGKTIQKEDLERLLRNDVKLQSYVDQAF 748

Query: 844  EKENL---------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI- 891
            +KE              I +I   +        L ++ +  +  E + +      ++ I 
Sbjct: 749  KKELFKVSPEEKPEYNGIQLINSKVIVSYLKQLLRNDLQ-YTPFEMVAMEKKVSEEITIQ 807

Query: 892  -ESIGIHLT--GFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP---------QLS 938
                   L   G  DR+D  K   + I DYKTG +PK     ++L  P         Q  
Sbjct: 808  TGQGPFTLRLGGTIDRMD-AKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTF 866

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-------EKSL 991
            L AA +       +       L YI          +    +               ++  
Sbjct: 867  LYAAIMSRQQSLMVAPA----LLYIHRAASENYSPVIEMGEPRKPKIPVNNFAFFEDEFR 922

Query: 992  KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            + L  ++  + + E+PF        K     ++  + 
Sbjct: 923  ERLQTLLEEIFSEEEPFT--QTEDTKKCSYCDFKAIC 957


>gi|293369071|ref|ZP_06615668.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292635839|gb|EFF54334.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 984

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 140/1046 (13%), Positives = 303/1046 (28%), Gaps = 167/1046 (15%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L+   +  P KRA           +  K    P   S+ D+ ++           L   
Sbjct: 44   DLSRTVLVFPNKRANLFFNEYLAGESD-KPIWSPAAMSISDLFQKLSVQKGGDPIRL--- 99

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                     +  L  +++ +                  +  +  +  + L    D ++  
Sbjct: 100  ---------VCELYKVFKEETRSQ-------------ETLDDFYFWGELLISDFDDVDKN 137

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                + L +                LK     +      L+       Q        E  
Sbjct: 138  MVDADKLFS------------NLQDLKNLMDDY----EFLDKEQEEAIQQFFQNFSIEKR 181

Query: 223  MKGTKGPIIIAGSTGSI-PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +  +  I +    G+I       ++ +     G +    ++          +       
Sbjct: 182  TELKEKFISLWDKLGTIYHRYRANLTELGIAYEGMLYRNVIEQ---------LDTDQLKY 232

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                           +     L    + +       +  Y + +   ++      +    
Sbjct: 233  DKYIFVGFNVLNKVESDFFRKLKDAGKALFYW--DYDIFYTQQIKKHEAGEFLKRNLEEF 290

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS-------ALITA 394
             + L     N  K    +  I A  E  +A  +   ++   +++ + +       A++  
Sbjct: 291  PNELPESFFNTFKESKKIRYISASTENAQARFLPGWIKAITNDHSQITVEKEKENAVVLC 350

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIA 447
            +  L   V   + +   N++I+ G PL+ T   S + +++               + A++
Sbjct: 351  NEALLLPVLHSIPQEVKNVNITMGFPLAQTPVYSFINAVMELQTNGYRSDTGRFTYEAVS 410

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             ++KHP  +       LS     LE    + N+      +LK                  
Sbjct: 411  AILKHPYTQ------QLSSHAGPLERELTQTNRFYPLPSELKQ----------------D 448

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                     +     L D++++ I  + T    +                          
Sbjct: 449  DFLTTLFTPRNGIKELCDYLIELIKNISTIYRKEGEY----------------------- 485

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
             +     L+ E   ++ + +           +         +IT+++    +    E + 
Sbjct: 486  -NDIFNQLYRESLFQSHTKINRLYSLIESGELNIRTDTLKRLITKVLTSSNIPFHGEPAI 544

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             + ++G LE+R L+F  LI+  LNEG  PK+   + F+   ++    + T E      A+
Sbjct: 545  GMQVMGVLETRNLDFRNLIILSLNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHKNAVYAY 604

Query: 687  DFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
             F        ++    +   +       SR++ +LLV G  D      + GQ        
Sbjct: 605  YFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEI 664

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                T +   +  + +          S S +   ++     Y R +  L        + D
Sbjct: 665  RVEKTPEVLRRIYRAYDSTHPNSLVLSPSALNAYLDCRLRFYYRYVAGLKTPDEVSAEID 724

Query: 805  RTDRGTLFHNIIT----ELIKKRINKNTPEINHLMKQ------IIDSHFEKENL------ 848
                GT+FH        +L          ++  L++        +D  F+KE        
Sbjct: 725  SALFGTIFHLSAQLAYTDLTATGKTIQKEDLERLLRNDVKLQSYVDQAFKKELFKVSPEE 784

Query: 849  ---PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI--ESIGIHLT-- 899
                  I +I   +        L ++ +  +  E + +      ++ I        L   
Sbjct: 785  KPEYNGIQLINSKVIVSYLKQLLRNDLQ-YTPFEMVAMEKKVSEEITIQTGQGPFTLRLG 843

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSF 949
            G  DR+D  K   + I DYKTG +PK     ++L  P         Q  L AA +     
Sbjct: 844  GTIDRMD-AKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQS 902

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQ 1002
              +       L YI          +    +               ++  + L  ++  + 
Sbjct: 903  LMVAPA----LLYIHRAASENYSPVIEMGEPRKPKIPVNNFAFFEDEFRERLQTLLEEIF 958

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028
            + E+PF        K     ++  + 
Sbjct: 959  SEEEPFT--QTEDTKKCSYCDFKAIC 982


>gi|56416656|ref|YP_153730.1| hypothetical protein AM419 [Anaplasma marginale str. St. Maries]
 gi|56387888|gb|AAV86475.1| hypothetical protein AM419 [Anaplasma marginale str. St. Maries]
          Length = 946

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 158/1057 (14%), Positives = 322/1057 (30%), Gaps = 176/1057 (16%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             V T+  S  F   +    +   +                  + VP+    Q L  E  +
Sbjct: 24   RVLTVHCSESFVETVARYAIAHRIDA----------------VVVPSSTDAQLLSHEVSK 67

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
            +T   + +   I +   V           +   +  +S   +LL LA+ +  W       
Sbjct: 68   LTAHGANL--DILAFTSVD-------GCAATAYDASMSAAGQLLLLAQFVAQWSAAHRAD 118

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
                       L                      T     + L    +++         D
Sbjct: 119  YPLQIASELSLLLDEL-----------------HTNCVGPDALQVFGDDELSGR-CRMID 160

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            FL     +W +       +        L+              I++AG       T  L 
Sbjct: 161  FLCDLVPWWEQERKSRGLAPSGCGIGPLVGGFERS-----GKRIMVAGIVFGKIFTRFLR 215

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              + +  +  IVLP +D  +    W T+             +S H QY + +LL  L + 
Sbjct: 216  LLMHSVSDAVIVLPYVDLGLSDREWQTL-------------HSEHYQYYVMQLLKDLGVG 262

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            R +V+RLG V        +   +                   +        D+ LI   +
Sbjct: 263  RNEVERLGQVKVNHVVERLFNFELTSH---------------LAMNYGTGEDIELIACSS 307

Query: 367  EREEAISIAIALRMSLDENKK-----------KSALITADR---NLARRVKLEL------ 406
            E EEA+ +   L+    E  +            +A     +   ++ +     L      
Sbjct: 308  EAEEAVKVVEILKSCTTEAHRGAKAEFSCIGGWAASAKPTQTAVDVDKDTIRSLEGKSVT 367

Query: 407  --------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
                     R    + I A       + S+++   +  +    D + +  ++KHPL + G
Sbjct: 368  FVGSDSLAARVDALLRIGANYCDYDEIISALVLCSIEVVVSSGDAVQLLCMLKHPLVRLG 427

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
            +      +     E+  +RG+                      +            E+ +
Sbjct: 428  YDADEYCKLLAEFEIRVVRGH----------------------SAAGFEAIGSAIREEFQ 465

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                   ++++ I+P+V  +          +I +     V CL+ +      KL      
Sbjct: 466  QLEEFWRNVVEAISPMVAVREGS-------TIGEIAAAHVQCLERL----MDKLDTSACT 514

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                 +S+ FS        +   ++     +  L+       +  K   + +        
Sbjct: 515  HALNKISTFFSLFDNYCVGVAVFSLTSYKEVCTLLVRAFFTVERNKLFGVNLAT------ 568

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
               D  +L G +E  +      +  L+  ++  L L   E+Y G+  +        + L 
Sbjct: 569  --RDAAVLAGFSEAEFK--PRCSHLLNNWVRERLGLPLLEEYCGRMMYVLYSFFYAKKLR 624

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
             T+S +   +      W++ L  L        LK R + Y      +        Y+   
Sbjct: 625  ITKSAKSFGVAVAEPIWIRYLTFL--------LKDRTERYAATQAVVGSNVVTDPYRASA 676

Query: 759  PFPPLEAQPRTYSFS---EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
            P P L+ + +  S      +  LI++PY  Y + ILK+                 + H I
Sbjct: 677  PNPGLDVRKKAMSVLTAKAVDTLISNPYVFYVQYILKMFPTKTVNTQHLVRGFNIIAHKI 736

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            + E +     +      +L+ +I    F+      P+  ++W   F +++ +F   + + 
Sbjct: 737  LREYLVSIGTEAGD--YNLLLEIAKRQFDAIAVTHPYAHVLWWPKFKEMARNFFAVDSER 794

Query: 875  QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
            + +  +          + S  I +    DR++ +K G V +   K G  P K   +    
Sbjct: 795  RYAASRTESGKSFVWHV-SEEIQVIARCDRVEYMKDGSVMVACNKVGAAPSKADMRCGFA 853

Query: 935  PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
                   A + A   ++     VA+  Y ++             +     E+   + +  
Sbjct: 854  S-----RAIVDAVCVAESTGANVASFAYWKIAP-----WTVEVVQVEDCAEVIHAAKQGF 903

Query: 995  IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031
             E++        PF       E  +  S Y+ L+R+ 
Sbjct: 904  KELLLRYAEQMTPFSPR----EDFSTFSAYELLSRIR 936


>gi|299145464|ref|ZP_07038532.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
 gi|298515955|gb|EFI39836.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
          Length = 959

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 137/1046 (13%), Positives = 300/1046 (28%), Gaps = 167/1046 (15%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L+   +  P KRA           +  +    P   S+ D+ ++           L   
Sbjct: 19   DLSRTALVFPNKRANLFFNEYLAGESD-QPIWSPAAMSISDLFQKLSVQKSGDPIRL--- 74

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                     +  L  +++ +                  +  +  +  + L    D ++  
Sbjct: 75   ---------VCELYKVFKEETRSQ-------------ETLDDFYFWGELLISDFDDVDKN 112

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                + L +                LK     +      L+       Q        E  
Sbjct: 113  MVDADKLFS------------NLQDLKNLMDDY----EFLDKEQEEAIQQFFQNFSIEKR 156

Query: 223  MKGTKGPIIIAGSTGSI-PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +  +  I +    G+I       ++ +     G +    ++          +  +    
Sbjct: 157  TELKEKFISLWDKLGTIYHRYRANLTELGIAYEGMLYRNVIEQ---------LDTEQLKY 207

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                                 L    + +       +  Y + +   ++      +    
Sbjct: 208  DKYIFVGFNVLNKVENDFFRKLKDAGKALFYW--DYDIFYTQQIKKHEAGEFLKRNLEEF 265

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS-------ALITA 394
             + L   + N  K    +  I A  E  +A  +   ++   +++ + +       A++  
Sbjct: 266  PNELPESLFNTFKEPKKIRYISASTENAQARFLPGWIKAITNDHSQIAVEKEKENAVVLC 325

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIA 447
            +  L   V   + +   N++I+ G PL+ T   S + + +               + A++
Sbjct: 326  NEALLLPVLHSIPQEVKNVNITMGFPLAQTPVYSFINAAMELQTNGYRSDTGRFTYEAVS 385

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             ++KHP  +       LS     LE    + N+      +LK                  
Sbjct: 386  AILKHPYTQ------QLSSHAGPLERELTQTNRFYPLPSELKQ----------------D 423

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                     +     L D++++ I  + T    +                          
Sbjct: 424  DFLTTLFTPRNGIKELCDYLIELIKNISTIYRKEGEY----------------------- 460

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
             +     L+ E   ++ + +           +         +IT+++    +    E + 
Sbjct: 461  -NDIFNQLYRESLFQSHTKINRLYSLIESGELNIRTDTLKRLITKVLTSSNIPFHGEPAI 519

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             + ++G LE+R L+F  LI+  LNEG  PK+   + F+   ++    + T E      A+
Sbjct: 520  GMQVMGVLETRNLDFRNLIILSLNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHKNAVYAY 579

Query: 687  DFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
             F        ++    +   +       SR++ +LLV G  D      + GQ        
Sbjct: 580  YFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEI 639

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                T +   +  + +          S S +   ++     Y R I  L        + D
Sbjct: 640  RVEKTPEVLRRIYRAYDSTNPNSVILSPSALNAYLDCRLRFYYRYIAGLKTPDEVSAEID 699

Query: 805  RTDRGTLFHNIITELIKKRINKN----TPEINHLMKQ------IIDSHFEKENL------ 848
                GT+FH                    ++  L++        +D  F++E        
Sbjct: 700  SALFGTIFHLSAQLAYTDLTAAGKTIQKEDLERLLRNDVKLQSYVDQAFKEELFKVSPEE 759

Query: 849  ---PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI--ESIGIHLT-- 899
                  I +I   +        L ++ +  +  E + +      ++ I        L   
Sbjct: 760  KPEYNGIQLINSKVIVSYLKQLLRNDLQ-YTPFEMVAMEKKVSEEITIQTGQGPFTLRLG 818

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSF 949
            G  DR+D  K   + I DYKTG +PK     ++L  P         Q  L AA +     
Sbjct: 819  GTIDRMD-AKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQS 877

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQ 1002
              +       L YI          +    +               ++  + L  ++  + 
Sbjct: 878  LMVAPA----LLYIHRAASENYSPVIEMGEPRKPKIPVNNFAFFEDEFRERLQALLEEIF 933

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028
            + E+ F        K     ++  + 
Sbjct: 934  SEEETFT--QTEDTKKCSYCDFKAIC 957


>gi|120437694|ref|YP_863380.1| hypothetical protein GFO_3373 [Gramella forsetii KT0803]
 gi|117579844|emb|CAL68313.1| conserved hypothetical protein [Gramella forsetii KT0803]
          Length = 927

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 151/1022 (14%), Positives = 291/1022 (28%), Gaps = 189/1022 (18%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L+ VT  +P+KRA   L  E   I+  K+   P I S+ +  E     + + + +    
Sbjct: 27   PLSEVTFILPSKRAGSYLIKELSSISD-KNLFSPTIYSIEEFTEVVSGLESIDNTS---- 81

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                     L     ++ +   +   + +              I  A+NL    + I+  
Sbjct: 82   --------SLFEFYDVYEDLTEENSLEDFET-----------FITWAQNLIHDFNEIDRY 122

Query: 163  EKKWE-DLHALKNEKYGMWW----------LLAADF---LKIASKYWTERLVELNASSPV 208
               ++   + L   +    W               F   L    +  + +L+  N     
Sbjct: 123  LIDYKPFFNYLAGIQDINHWYLKDEKTDLIKRYLKFWKNLPGFYEALSRKLLSKNQGYQG 182

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                       ++     +  + I G      +   ++  +            L+  +  
Sbjct: 183  LIYRKAAENITDYAATHKQKHVFI-GFNALNASEQLIIQNL------------LETKLAE 229

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              W+       +                                           +   S
Sbjct: 230  IYWDLDKTFYKDP------------------------------------------AHGAS 247

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
                    +     D   N++           LI       +A  +   L        + 
Sbjct: 248  IFIRDYFKNWKYYQDNEPNELSENFGKEKQFELIGVPKNIGQAKYLGEILTNLNSAQLEN 307

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI---FKLNDFMA 445
            +A++  +  L   V   L     +++I+ G P+     +S+  SL            +  
Sbjct: 308  TAIVLGEEELLLPVLNSLPEEIQDLNITMGFPVKNAPINSLFESLFQIHINKTDTYYYKD 367

Query: 446  IATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
            + +++ H    P+ K    E  +      L  +  +   +S+                  
Sbjct: 368  VISIINHPSFNPILKNYAEELIIKINSENLIYLEPKKIISSFP----------------- 410

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
             T +    +       +   + +  + Q I  L T+   +                    
Sbjct: 411  -TEIKELITACFNPKNDAVSIFISDVQQIIQNLKTHLKKEED------------------ 451

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                         L F      L +    + ET   +K            ++  ET+  +
Sbjct: 452  ----------KIALEFLYHFHILFNKLQNLNETYPHLK-TIKSLYGFYREMVGTETLDFQ 500

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT-AEKY 680
                  L ++G LESR L+F+T+I+  LNEGV P   + N F+   ++ +  L T  EK 
Sbjct: 501  GRPFQGLQLMGMLESRALDFETVIITSLNEGVLPAGKSDNSFIPYDLKQEYKLPTYREKD 560

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                 H + +    +++    +   +       SR++ +L +                  
Sbjct: 561  AVYTYHFYRLLQRAKNVYLLYNTEADGLNSGEKSRFITQLEIENLKTHTLRKLLISPEVP 620

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
               + L    K P                 +S S +   I +P   Y + +L +      
Sbjct: 621  GINKNLKEVRKTPEIM----DKLKSLANSGFSPSALTTYIRNPLDFYHQYVLGVRDQEEV 676

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKN-TPEINHLMKQIIDSHFEKE--------NLPP 850
            ++       GT+ H+ +  L K    K  T EI     +I D     E         L  
Sbjct: 677  EETVAFNTLGTVVHDALENLYKPYEGKLITEEIIQGFIKIADREIANEFSKTYSKIPLEK 736

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIE---KIFVNIPAKMAIESI----GIHLTGFAD 903
              +++   +  +  H+FL  E K     E    I +    K+ +        ++L G  D
Sbjct: 737  GKNLLIFEVAKRYLHNFLRFELKRLKQGEEIQIIQIEKDLKVKLPIEKLPFSVYLRGKVD 796

Query: 904  RIDLLKSGFVDITDYKTGDNPKKE-------TAQKLID-----PQLSLEA-AALKAGSFS 950
            R +  KS    I DYKTG    +           K  D      Q+   A          
Sbjct: 797  RFENSKS-TPRIIDYKTGKVESRNLNVTDWGEITKDYDNYSKSFQVLTYASLIALEKGLK 855

Query: 951  QIDCRKVANLFYIRLKQK----FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                 +   + +  LK       K +  T  K      E  E     L  ++  + N E 
Sbjct: 856  --FPAEAGIVSFKNLKSGFLKFEKREAGTRQKDSLITGETLEMFQNELKNLIMEICNPEI 913

Query: 1007 PF 1008
            PF
Sbjct: 914  PF 915


>gi|303237137|ref|ZP_07323707.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|302482524|gb|EFL45549.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
          Length = 961

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 148/1085 (13%), Positives = 305/1085 (28%), Gaps = 208/1085 (19%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F  E+   L+                 L+ + +  P KRA   L  E  + +       P
Sbjct: 8    FLAEVAQDLIKKYGNN-----------LSKIAVVFPNKRASLFLNEELAKRSDG-PIWSP 55

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               ++ ++  ++    +                  L  L   +  K              
Sbjct: 56   SYITISELFRQQSALTIADPIK------------SLCVLYKTYIEKT------------- 90

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKK-------WEDLHALKNEKYGMWWLLAADFLK 189
                +        + L    D I+             +DLH L    Y          L 
Sbjct: 91   GKSETLDEFYSWGQLLLADFDDIDKNMADAKMIFRNLKDLHELDTIDYLSEEQKT--ELS 148

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
                 ++        ++ +  +   + ++   +    K  +              L   V
Sbjct: 149  RFFANFS------GDTTVLKERFLNLWSKLYDIYCDFKAKLKAEELA----YEGMLYRDV 198

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                N                        T   +         Q    KL   L  + + 
Sbjct: 199  VEKKN----------------------YPTQYETYIFIGFNVLQTVEQKLFSALKKEGKA 236

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                      +   +          D       +     + N  +   +V  + A  E  
Sbjct: 237  RFYWDFDHYYLKATNEAGVYINKWFDKFPNEFDNNS--DLYNHFEDEKEVHYVSAPTENL 294

Query: 370  EAISIAIALRMSLDEN-KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            +A  I+  L         K++A++  + +L + V   +      I+++ G PLS T  SS
Sbjct: 295  QARYISEWLLEKERYKAGKRTAVVMCNESLLQTVIHCVPTEVDLINVTTGYPLSQTPISS 354

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            ++               +  L     +            +       LR     Y I D 
Sbjct: 355  MV-------------WQLIALQTEGYSASED------AFRLKFITHVLRHPYGKYLIADA 395

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
               +      ++               D +  +  VD                       
Sbjct: 396  SEKLTTLRLNKQFYIKGQDIGFIHVNHDNQHIIEFVDW---------------------- 433

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK--TLSSLFSKIIETGSCIKANAIEWI 606
                        ++N+ +        L+ E   +  TL +  S+++     + A+     
Sbjct: 434  --------LSEMVKNIAIGGKENDDQLFQESTFRMYTLLNKLSELM-KSGDLIADYAILR 484

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             ++++LI   ++    E +  + I+G LE+R L+FD ++L   NEG  PK    N F+  
Sbjct: 485  RLLSQLISSTSIPFHGEPAHGVQIMGVLETRNLDFDNVLLLSCNEGNMPKGVNDNSFIPH 544

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGG 724
            +++    L T +  +   ++ F       +H+    +       T   SR++ +L+V   
Sbjct: 545  IIRKAYGLTTIDNKVAIFSYYFHRILQRAKHVTLLYNNSTQGTKTAEMSRFMLQLMVESN 604

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
             +      + GQ  ++ T  +    +    K              +S + I         
Sbjct: 605  LNIKQIALQAGQEPMNLTTSILQKDEVVMAK--------LNHISYFSPTAINTYRRCELM 656

Query: 785  VYARRILKLDFIP-HFKKDPDRTDRGTLFHNIITELIKKRINKN---TPEINHLM----- 835
             Y + + +L     + + D D    G +FH     + ++ + +      +I  ++     
Sbjct: 657  FYYKYLAQLKEPDNNEEDDIDNRIFGNIFHLAAELIYERLLPREVITKEDIEKVLKSGKS 716

Query: 836  -------------KQIIDSHFEKENLPP-----------HIDIIWRHLFHKISHSFLEHE 871
                           +I   F +E                + II + +  K+    LE +
Sbjct: 717  VQSPTMGNTNITIDDVIAEAFARELFLQNNGMKRLPKLNGLQIIKQQVIKKLLLQMLELD 776

Query: 872  EKIQSSIEKIFVNIP----AKMAIESI--GIHLTGFADRIDL--LKSGF--VDITDYKTG 921
             K  + +  I           + I      I + G  DR+D   L +G   + + DYKTG
Sbjct: 777  -KRTAPMRVIKHEFDIHKTLSLDINGTKKEIKVGGRVDRLDEVNLGTGREQLRVVDYKTG 835

Query: 922  D--NPKKETAQKLIDP------------QLSLEAAALKAGSFSQIDCRK--VANLFYIRL 965
            +      +  + + +P            Q  L +   +          K     L +I+ 
Sbjct: 836  NKVAAGLKDVEAIFNPSNIAKNKSDYTFQALLYSLIEQTEDAENNPQHKQVSPALLFIQH 895

Query: 966  KQKFKIDCITNDKKKYSADEL--SEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
             +      I     +   D L  +E+    L + +  L   E          +    Q  
Sbjct: 896  AKSEDYSPILKLGNEDILDSLTYAEEFETLLKKELEGLFTKE---TFEPTTIKDICKQCP 952

Query: 1024 YDHLA 1028
            Y  + 
Sbjct: 953  YQQIC 957


>gi|149278326|ref|ZP_01884464.1| hypothetical protein PBAL39_12232 [Pedobacter sp. BAL39]
 gi|149231092|gb|EDM36473.1| hypothetical protein PBAL39_12232 [Pedobacter sp. BAL39]
          Length = 970

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 148/1086 (13%), Positives = 306/1086 (28%), Gaps = 193/1086 (17%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
            PF RE+   L+     E           L    I    KR +  L++   ++   K    
Sbjct: 3    PFLREVAEDLVARLGAE-----------LHHAAIVFNNKRPVPYLQNHLADVI-GKPFWS 50

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK-----LPDIIKDL 130
            P   ++ +        ++              +   L +   +   +     L   +   
Sbjct: 51   PSFFTIQEFFALSTRLEIAD---------GFTQFFTLLQQYNLLLAEEGSKPLNPDVFYP 101

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL-------- 182
                 LS      N +  A  L + +  I   E+ ++ L   +      +W         
Sbjct: 102  IARIILSDFAQIDNDLVNAGQLFEELKDIAIIERDFQHLSPEQQAFLEQFWSSFSAGKQL 161

Query: 183  -------LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM---KGTKGPIII 232
                        +      +   L     ++       L   +A+         +G ++ 
Sbjct: 162  NHQEQFIRMWRRMPKLYAGFHAALEAKGLTTMAHVYRLLAEGKADRPEFVADFARGKLVF 221

Query: 233  AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
            AG      A A +         G       D ++             NI       +   
Sbjct: 222  AGFNALSNAEAEIFKRWQKEEKGLFYFDTDDYYMKDDTQEAGLFLRKNIERLGLPNALVE 281

Query: 293  QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
            Q    +L+  +  + +  K  G  +     +  ++    +                    
Sbjct: 282  Q---KELIRSIQKEVKVYKTQGQTAQAKILQQELLQDYPML------------------- 319

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
                         + R+ A  IA+ L         +S L+   + +    +       I+
Sbjct: 320  -------------DSRDNAGKIALILA-------DESLLLPVLQTIPTSYQTVEGLNSID 359

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLS 465
            ++++ G PL  +    +    L+              +  +   + HPL      ++ + 
Sbjct: 360  LNVTMGYPLLASSIFGLADLWLSIQSQLTEGKKDTVYYREVEAFLSHPLTGVAAEQRDVL 419

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                                                             + + LA  LV+
Sbjct: 420  -------------------------------------------------QQEILAGQLVE 430

Query: 526  HILQCITP-LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
              L  +   L+        + G  +IS   ++    L+    D+  K             
Sbjct: 431  VPLSRLQESLLWELFFSRVSGGLTAISSLQQVFKRILERQLEDKTLKQTEADLFAATIKE 490

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             +     +E     +      + +I + I G  V    E    + ++G LESR L+F+ +
Sbjct: 491  LNRLHDTLE-LYASRLPLPFVLSLIQKAIQGIAVPLSGEPLQGIQVMGLLESRSLDFEHV 549

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRS- 702
             + GLNEGV P+      F+   ++    L   E     +A+ F      +R +    + 
Sbjct: 550  YVLGLNEGVVPQVNVSPSFIPDSIRRAYGLPVLENQDAISAYMFYRLLQRSRKVSLVYNG 609

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
              ++N     SR+L++L    G  F    + +       +      T     +       
Sbjct: 610  QADDNNTGEPSRFLRQLEFESGYTFKYYDQSQALAIETVSDFSIPKTGAVLERLHAYLEG 669

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
              A     S + I   +N P   + + I K++      ++ +    G+  H ++      
Sbjct: 670  HAAYQPRLSATAITTYLNCPIQFFYKYIAKIEEPKELAENLEANSIGSTLHLVLERFYAG 729

Query: 823  RINKNTP-------EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH----- 870
                +              + ++  S F                  ++  + +       
Sbjct: 730  LKADDDHITKARISGARKALGELCKSAFATVMFDQEEARAEHSGMEQVMLAIVAEYANVI 789

Query: 871  --EEKIQSSIEKIFVN------IPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKT 920
               ++ Q+    I +       IP  + ++     + L G  DR+D   +G V I DYKT
Sbjct: 790  LDHDEQQAPFTLIELENDEDYKIPFTIKVQGEERRVTLFGIIDRVDQR-NGVVRIVDYKT 848

Query: 921  GD----NPKKETAQKLIDP-------QLSLEAAALKAGSFSQIDCRKVANLFYI--RLKQ 967
            G         E   +   P       Q        +      I   +     YI  ++++
Sbjct: 849  GRDEIGYSSIEELFERDSPQQNKALVQTLFYTYVYEQA--RGIRGVEPN--LYIVRKMRE 904

Query: 968  KFKIDCITNDKKKYSAD-ELSEKSLKNLIEIVT----LLQNGEQPFISHLRLSEKSNIQS 1022
            +  +      +KK     E  E   +N   ++      L +   PF SH    E   +  
Sbjct: 905  EGTLFYSRESRKKVLLQAEHLEALKENFSSLLRLKLEELFDPSVPF-SHTTAMEN-CVYC 962

Query: 1023 EYDHLA 1028
             Y +L 
Sbjct: 963  PYSNLC 968


>gi|218885869|ref|YP_002435190.1| hypothetical protein DvMF_0765 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756823|gb|ACL07722.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1100

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 136/990 (13%), Positives = 258/990 (26%), Gaps = 96/990 (9%)

Query: 2   HNKKPNVFTI-APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
             + P  F I    + F   +   L+  T                      P  R  + L
Sbjct: 36  AGRGPRPFLIFPWDTDFLAGLTATLIEATNGRP-----------GDAVFVFPHGRPGRYL 84

Query: 61  RSEFIEITGK-KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIW 119
                      +  +LP + ++  +           +     P+  + R+  L   +   
Sbjct: 85  VDRIRRAPDIVRPCLLPRVFTVRQMFTLLRAHAEDPTARPARPIPLLDRVGLLMDCVRGL 144

Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179
                ++ + L                     LA +++    + +  ED   +   +   
Sbjct: 145 ARPGDELYEHLAATDQ-------RRFFPWGVRLAALMEEFFVQNRVPEDYQYM-EGQVAP 196

Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------------- 226
           +       L    + +   L E   ++P       +R        G              
Sbjct: 197 FAAALLGALGRIHEAYAAALTERGWTTPGFDAFRSVRLLPGPDETGRATERPDGFTLPPL 256

Query: 227 --KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                + +AG +        L   +  H    + L                         
Sbjct: 257 LAGKRLFVAGFSTLTGTEEALFLHLWRHEGATVCLHT-----------DAAVAELGGRPV 305

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
           + T   H      + L                +  +         S L     ++R    
Sbjct: 306 HWTCEDH-----VRWLTSWRAGAALACPPSGHTPSITFHEGYDLHSQLLVMERELRADSG 360

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
                P+     S      +     E+   +I      DE     A++  D  L   V  
Sbjct: 361 DAPDAPSANATPSGNLKESSLTPAIESTENSIPPAPDADELAGT-AVVLPDTGLLMPVLH 419

Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF--GFPEK 462
            L     +++IS G PL  +    ++ +L+          ++A   + P A     F   
Sbjct: 420 HLP--DKDVNISMGYPLVRSTLVRLVETLMRLQETARPAASLALPEQGPEAGPGDTFAAP 477

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
             S    +      R          LK L LD     ++  H+     R      +   L
Sbjct: 478 GGSDTAPSTMCYHWRTVIECIRHPYLKMLELDGERPLRDLFHLMENVVRGGASYVDPRAL 537

Query: 523 LVDHILQCIT-----PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             +   +                          +D        +  +C         LW 
Sbjct: 538 AREVAQKAPGGEHGPAAALLHRVLELCLTRWEAADTPARVADVVGALCDLLLAHGGTLWE 597

Query: 578 EE--EGKTLSSLFSKIIETGSCIKANAIEWID-----IITRLIDGETVKPKIEKSSTLFI 630
               + + L  L  ++I      +     +       I+   +  E V  +    + L +
Sbjct: 598 RFPIDAECLFRLMQRVIPALRDCELADTPFPREVLHTILRETLREERVPFEATPLAGLQV 657

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           LG LE+RLL F  +I+    E   P     +P L   +++   L  + +    AAH+F  
Sbjct: 658 LGMLETRLLRFRRVIVLDATEDRLPGAPGHDPLLPDSLRAMAGLPDSRRRERVAAHNFHR 717

Query: 691 ANG-TRHLIYTRSLRENNIPTI-----ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                   +       +    +      SR+++ LL          L   GQ  L     
Sbjct: 718 LLAGAEQAVLCYQTGVDRSGLLDEKKIRSRFVEELLWREERAR-GGLLSPGQPPLHAAAC 776

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPR----TYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                +       +     +A  R      S S +   +  P   +  R+  L       
Sbjct: 777 TVRPFRSAPRPIERTTAINDALERLLDAPVSPSTLDAWLTCPVRFFHERLAGLAPPDEVN 836

Query: 801 KDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
           +  D    G L H ++ +          +        + ++         L   +     
Sbjct: 837 EGDDPIAVGDLLHKVLLDFHLPHKGREVRRDELSAEHLTRLFLQRLGASGLSAQLPPDAL 896

Query: 858 HLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAIESIG------IHLTGFADRIDLL-- 908
            +        L      Q      + +  P +  I+  G        L G  DR+DL   
Sbjct: 897 LMLEVAGPERLGRYLSRQPERFTVLELEEPVEATIDVPGSAGRRIRRLHGRVDRVDLRDF 956

Query: 909 KSGF-VDITDYKTGDN---PKKETAQKLID 934
           + G    I DYKTG     P   +   L +
Sbjct: 957 EDGQGAVILDYKTGKVEWKPSAWSDDALWE 986


>gi|218516573|ref|ZP_03513413.1| hypothetical protein Retl8_24496 [Rhizobium etli 8C-3]
          Length = 507

 Score =  245 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 215/506 (42%), Positives = 294/506 (58%), Gaps = 9/506 (1%)

Query: 94  LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
             + +L  P+SN  R LELARLIL WRNKLP+I++ ++ +SPL  P SPA+AIWLA+NLA
Sbjct: 1   PATIDLAQPLSNTARQLELARLILAWRNKLPEIVRHIHSDSPLVAPASPADAIWLARNLA 60

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
           ++ID IETE+  W +L  L    Y  WW L A+FL+IAS +W  RL EL  SSP  ++ A
Sbjct: 61  ELIDSIETEDLDWSELSKLDTGDYAAWWQLTAEFLQIASAFWPARLAELGKSSPARHRNA 120

Query: 214 LMRAEAEHLMKG-TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
           ++RAEA  L      GPIIIAGSTGS+PATA L+S VAN   G IVLPGLD  +P   W 
Sbjct: 121 ILRAEAARLSATKPGGPIIIAGSTGSVPATADLISAVANLREGVIVLPGLDLAMPEEHWQ 180

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
            +  +      +N    +HPQY L+ LL  L + R DV  L     ++  R+ ++S++  
Sbjct: 181 MVAPEPVPGQHANPASRSHPQYGLSSLLKRLRLTRADVSTLDRPDADLDRRAEILSRALA 240

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---- 388
           P + +        E     +   F+DV+LIEA NEREEA +IA+ALR++L+   +     
Sbjct: 241 PAEATSDWGIWKSELPGGALTSAFNDVSLIEAANEREEATAIAVALRLALERPGQDGESR 300

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
           +ALIT DRNLARRV  EL+RFGI  D SAG PLS T   S+L  LL A  +  D +AI +
Sbjct: 301 AALITPDRNLARRVMAELSRFGILADDSAGTPLSATPQGSLLQLLLEASLRPGDPVAIVS 360

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
           L+KHPLA+FG     L+ A  ALEL+ALRG     DI  L+ L+  ++A Q  + H P W
Sbjct: 361 LLKHPLARFGLERNALTFATEALELLALRGGVAEVDIGALEPLLTHQLAEQALDRHAPQW 420

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVT----YKTNKNSTCGNLSISDWTKLTVTCLQNV 564
           +  L  E  + A  L   + +   PL      ++        + ++S+W + T   L+ V
Sbjct: 421 RKALPTEAADAAFELAGRVSRATEPLAAALVRHRPEDRGKTASFTLSEWAQRTGRALEAV 480

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSK 590
             D    L +LW  E G  L+SL  +
Sbjct: 481 AADPQGNLADLWSNEAGDALASLLGE 506


>gi|91215421|ref|ZP_01252392.1| hypothetical protein P700755_09913 [Psychroflexus torquis ATCC
            700755]
 gi|91186373|gb|EAS72745.1| hypothetical protein P700755_09913 [Psychroflexus torquis ATCC
            700755]
          Length = 900

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 146/999 (14%), Positives = 300/999 (30%), Gaps = 154/999 (15%)

Query: 44   LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            L      +P++RA Q    E ++    +S I+P I+S+ + +E+     L         +
Sbjct: 17   LDHCRFVLPSRRAAQAFSKELLQRNQGESFIVPPIQSIEEFIEDVSEVKL---------I 67

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            +N++ L E   +     +                      +     +++    + I+  +
Sbjct: 68   NNLETLFEFYNIYKDHTD--------------PKHQEPIDHVYNWGQSIIQDFNEIDRYQ 113

Query: 164  KKWEDL-HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                     +K  K    W  +                          +  L+    E  
Sbjct: 114  IDANQFFGNIKAIKDIEHWSKS------------------------DVKTELVENYIEFW 149

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +  K    +             + +      G   L         A+ N       +  
Sbjct: 150  ERLPKYYHEL----------KANLKSKNKAYQGMAYL--------EAVKNIEAYSKNSSR 191

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            +               +   +  +          +      + +          +    +
Sbjct: 192  NFYLLGFNALNTCEEVIFQTIIDQNRGKVFWDIDNYLYD--NHIAGMFLRHYSKTWPYYS 249

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402
                    N      ++ +     +  +A  +   L    +    ++ALI  D  L + +
Sbjct: 250  RESLVPSTNSYLNKKEINIYGVPKKIGQAKLVGDLLSKMSEGELNETALILGDETLLQPI 309

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI---FKLNDFMAIATLVKHPLAKFGF 459
               L      ++++ G+PL  T   S    L            F  +  L  HP+ +   
Sbjct: 310  LNSLPDNIKKVNVTMGLPLHQTNMVSFFEVLFKIRSQNEDRLHFKTLLELSGHPVLRK-- 367

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                    +  L+ +  R +KN+      +  +                    S +  + 
Sbjct: 368  ------AYQKELQSIETRIHKNNIIFQSKEDFL-------------------KSCQSFDS 402

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
             ++L+  +   I                 S+ ++    +  ++ +  +    +  L +  
Sbjct: 403  DLILIFKLSIFIKDC--------------SVDEFLANCLKIIEILKPNFSSDVLQLEYLF 448

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
              K L +    ++E  S +  +   +  I   ++  ET+  +      L I+G LESR+L
Sbjct: 449  GFKKLFTKLKNLME-SSELIKDFKVFHLIYIDILSSETLDFEGSPYEGLQIMGMLESRVL 507

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--L 697
            +F  +I+  LNEGV P   ++N F+   ++    L T ++     A+ F           
Sbjct: 508  DFKNVIITSLNEGVLPSGKSQNSFIPFDLKKAYKLPTYKEKDAIYAYHFFRLIQRSSQCH 567

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
                +          SR+L +L +                       L    K P     
Sbjct: 568  FIYNNATSGIEKAEKSRFLTQLEIFKAPQHSVKNHTAVSNTQQKKTILKEVRKTPQ---- 623

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
                         S S +   I +P   Y R +L +  + H ++D      GT+ H+ + 
Sbjct: 624  MIEKLESLFQYGISPSALAAYIRNPIDFYRRYVLDIKEVDHIEEDISFRTHGTVIHDCLD 683

Query: 818  ELIKKRINKNTP---------EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
             L      K            E  +++K + +  F KE L    ++I   +  +    FL
Sbjct: 684  FLYSNYKGKLLDSSDIDSMLKEYPNVIKTLFEKKFPKEALQNGKNLIDFKIAKQQIKRFL 743

Query: 869  EHEEKIQSSIEKIFVN----IPAKMAIESIGI--HLTGFADRIDLLKSGFVDITDYKTGD 922
              E++I  S + I +         + I+ I     L G  DRID L +  + I DYKTG 
Sbjct: 744  IQEKEIVKSNQVIILELENIAEKSITIDDIDFSIKLKGAVDRID-LCNNQLRIIDYKTGR 802

Query: 923  NPKK------------ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ-KF 969
               K            E  +     Q+   +   +      +    +A +  I L+  K 
Sbjct: 803  VESKDLKIAENWTDFIEDYKYSKAFQVLFYSLLKE----EDLGENGMAGI--ISLRNLKS 856

Query: 970  KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
                 +  K   +   L       L  ++  + + E PF
Sbjct: 857  GFMTCSQTKTNLTLKSLLPDFKIQLKSLILEILDPEIPF 895


>gi|298207225|ref|YP_003715404.1| hypothetical protein CA2559_03200 [Croceibacter atlanticus HTCC2559]
 gi|83849861|gb|EAP87729.1| hypothetical protein CA2559_03200 [Croceibacter atlanticus HTCC2559]
          Length = 911

 Score =  244 bits (621), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 157/1013 (15%), Positives = 310/1013 (30%), Gaps = 175/1013 (17%)

Query: 42   LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              L+     +P++RA+  L+    + T  K+T LP I S+   +E+              
Sbjct: 17   QDLSKPIFILPSQRAVSFLKQLMAKRT-NKATFLPEIYSIESFIEKVAGLQQ-------- 67

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             + N   L +L  + +   NK      + +                 A+ +    + I+ 
Sbjct: 68   -IDNTTTLFKLYEVYISLINKEDQETFETFS--------------GWAQTIIGDFNEIDR 112

Query: 162  EEKKWEDL-HALKNEKYGMWWLLAAD---FLKIASKYWTER----------LVELNASSP 207
                 ++  + L   K    W LA +    ++   K+W +           L+       
Sbjct: 113  YLIPSDEFFNYLSEIKDKDHWYLADEKTTLIENYLKFWKQLPQLYNALYSSLISSKKGYQ 172

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                         +L    K  I I G      A   ++       + A V   LD    
Sbjct: 173  GLIYREAANNIDTYLSTNNKTHIFI-GFNALNNAEQHIIQQSIK-KDCAEVFWDLDEVFY 230

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               ++                ++H   S  K                             
Sbjct: 231  NDTFH---------------DASHFIRSYYKN---------------------------- 247

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
                        +  +  +    +      ++++I    +  +A ++   L         
Sbjct: 248  -----------WKVFENKQFNGGHNFSNKKEISIIGTPKKIGQAKAVGQILNDIPANKLS 296

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
             +A+I  D  L   +   + +   +++I+ G+PL     +S    L          +   
Sbjct: 297  STAVILGDETLLLPLLNAIPKHIKDVNITMGLPLQKVPLASFFELLFTLQLNNTSEL--- 353

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
               KH L  F  P        + L +V+     N   I    SL+    A +     +  
Sbjct: 354  -YYKHVLELFNHPSLQYVLEVSKLNVVSYINTGNIVSIK-FDSLIAQSSAEESEIVKLLF 411

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
              S  + E        +  IL+ I  L    + + S                        
Sbjct: 412  SSSENNPEH------FISRILKIIQYLKQNLSVEQSVLR--------------------- 444

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                     +      L +    ++ T S I  N      I   ++  ET+    +K   
Sbjct: 445  --------EYLYRFNVLFNKLEHLLSTFSHIS-NISVLHTIYKDMLSNETLDFIGKKHDG 495

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYIGQAAH 686
            L I+G LE+R+L+F+ +I+  +NEG+ P   + N +L   ++ +  L T  EK      H
Sbjct: 496  LQIMGVLETRVLDFENIIITSVNEGILPSGKSANSYLPYDLKKEYGLPTYKEKDAIYTYH 555

Query: 687  DFEMANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGG--TDFFDNLKKRGQCYLDWTR 743
             + M           +    +      SR++ +L V          N           T 
Sbjct: 556  FYHMLQRCNQAHIIFNTEAGDLNSGEKSRFITQLQVEAQNYPKHSYNNLITLPKVPKITS 615

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
            +L    K                   +S S +   + +P   Y R +L +      ++  
Sbjct: 616  QLRTVQKTAQVM----DQIKYRAKSGFSPSALTLYMRNPIDFYTRYVLGVGDTEEVEETV 671

Query: 804  DRTDRGTLFHNIITELIKKRINKNT-PEINHLMKQIIDSHFEKE--------NLPPHIDI 854
                 GT+ H+ + +L    I +    +I  +M    D     E        +L   +++
Sbjct: 672  AYNTLGTVVHDTLEQLYTPYIGELLNADIIKVMTTKADKQVALEFNNTYSKSSLDKGMNL 731

Query: 855  IWRHLFHKISHSFLEHEEKI---QSSIEKIFVNIP--AKMAIESI--GIHLTGFADRIDL 907
            +   +  +  H+FL+ E+K       I+ + +       + I  I   ++L G  DR++ 
Sbjct: 732  LIFEVAKRYVHNFLKLEKKRLDNGEDIQILKIEEDNNVPITINGIDFPVNLRGKVDRVEK 791

Query: 908  LKSGFVDITDYKTG-------DNPKKETAQKLIDP-----QLSLEAAALKAGSFSQIDCR 955
              +G   I DYKTG            +      D      Q+   A  +       ++  
Sbjct: 792  T-NGITRIIDYKTGNVDLAKVTVKSWDDLNTDYDKYSKSFQILQYAYMM-HLKTPFLNPI 849

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
            +   + +  LK  F       + +  +  E  +   + L +++  + N   PF
Sbjct: 850  EAGIISFKNLKSGFLPFNYNKNTEITT--ETFKAFSEQLEQLIKDICNPNIPF 900


>gi|319952836|ref|YP_004164103.1| hypothetical protein Celal_1290 [Cellulophaga algicola DSM 14237]
 gi|319421496|gb|ADV48605.1| hypothetical protein Celal_1290 [Cellulophaga algicola DSM 14237]
          Length = 918

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 145/1032 (14%), Positives = 299/1032 (28%), Gaps = 167/1032 (16%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
              F  E++  L    +                    +P+KRA   L++   +    K+  
Sbjct: 11   QSFIEEVVQELTENGI------------DFTETIFILPSKRAGTFLKNTISKNLQ-KTIF 57

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
             P I S+   +E     +           S+ ++L  L +  L                S
Sbjct: 58   APEIYSIESFIELISELNYA---------SSTEQLFTLYKSYL--------------ATS 94

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL--KNEKYGMWWLL-AADFLKIA 191
                  S  +     + +    + I+      + + +     ++   ++       +   
Sbjct: 95   TEKDKDSFLSFSKWGQTVLQDFNEIDRYLVDTKAIFSHLSAIQELNTYFQEEPTQMIADY 154

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             K+W      L A      Q  L +  A           +I                   
Sbjct: 155  VKFWNN----LEALYTNFNQTLLEKNLASQGYAYRTANTLIDDY---------------- 194

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                  +   LD       +N + +   NI       S    Y                 
Sbjct: 195  ------IHKTLDKKFVFIGFNALNKAEENIIQQILEKSNAHIY----------------- 231

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                 +  +       S        +     +     I        ++ LI       +A
Sbjct: 232  -WDIDTYFLNDTLHDASLFIRQHKKNWNYFKEHSLKGISENFDSKKNIQLIGVPKNVSQA 290

Query: 372  ISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
              +   L    D      K++A++  D NL   +   +      I+I+ G P+  T  + 
Sbjct: 291  KYVGNLLEKIHDSQPALLKQTAIVLGDENLLNPILNAIPEKIERINITMGYPIHKTPLAV 350

Query: 429  ILTSLLNA----IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
            +                 +  +  L+ HP  +        + A      +  R       
Sbjct: 351  LFNLYFELWLTKESNGWFYQHLLNLLAHPYIQIYLQTDKTNNASAIANKIKTRN------ 404

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                                   W    +++  + A  L +                ++ 
Sbjct: 405  -----------------------WIFVKTKQLAQAAPELKELTTILFN---------DTA 432

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                +    +   +  L+    D       L +     TL +    ++   S I  +   
Sbjct: 433  LTPKNFIRRSLAIIAVLKQKFQD-SGSHLELEYLYRFHTLFNQLELMVNEHSFIT-DIKS 490

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
               +   LI  ET+  + E      I+G LESR L+F+T+I+  +NEG+ P   + N F+
Sbjct: 491  LQSLYKELIGTETLDFQGEPLQGTQIMGMLESRNLDFETVIITSVNEGILPSGKSNNSFI 550

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLR-ENNIPTIASRWLQRLLVL 722
               ++    L T ++      + F       +++    +           SR +++LL  
Sbjct: 551  PFDLKKIYGLPTYKEKDAVYTYHFYRLLQRAKNVYIVYNTEPHVLEGNEKSRLIKQLLTD 610

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
                            +     L+   K                 + +S + +   + +P
Sbjct: 611  DNLSENIKEITGSAAVVSANIPLERIEKSADLIE----QLKVLSEKGFSPTSLSNYVRNP 666

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----KNTPEINHLMKQ 837
               Y + IL+++ I   ++       GT+ H+ + +L +  +      ++   +   ++ 
Sbjct: 667  IDFYKKSILRINDINEVEESLAANTFGTIVHDTLEDLYQPFVGAYLVKESLENLLPKIEG 726

Query: 838  IIDSHFEKENLPPHI----DIIWRHLFHKISHSFLEHEEK--IQSSIEKIFVNIPAKMAI 891
             +  +F K      I    ++I   +  +   +F++ E K   Q  I+ I +     + +
Sbjct: 727  TVQHNFAKTYADGDITRGKNLIAYTVILRYIENFIKLELKEIQQHKIKIISLEQMLNVEL 786

Query: 892  ESIG----IHLTGFADRIDLLKSGFVDITDYKTGDNPKK-----------ETAQKLIDPQ 936
            E  G    I L G  DR+D +  G   I DYKTG    +           E   K    Q
Sbjct: 787  EIPGISHKIRLRGKLDRVDEI-DGATRIIDYKTGKVESRNVKITAWNDLIENYDKSKAFQ 845

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L   A  +       I+  K   + +  L            ++   +  L  +    L  
Sbjct: 846  LLCYAIMIDK--VKPIETIKAGIISFKNLNSGTLYFSEKRTEEINKSTLL--EFKNVLDT 901

Query: 997  IVTLLQNGEQPF 1008
            ++  + N + PF
Sbjct: 902  LIQEIFNPDIPF 913


>gi|218672989|ref|ZP_03522658.1| hypothetical protein RetlG_15865 [Rhizobium etli GR56]
          Length = 431

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 200/428 (46%), Positives = 270/428 (63%), Gaps = 7/428 (1%)

Query: 52  PTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRL 109
           PT+RA++ LRSEF+++ G +S ILPII+ LG+  ++   F   L  + +L  P+SN  RL
Sbjct: 1   PTRRAVRVLRSEFVDLLGGRSAILPIIRPLGETDDDSGYFDEALPATIDLAQPLSNTARL 60

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
           LELARLIL WRNKLP+I++ ++ +SPL  P SPA+AIWLA+NLA++ID IETE+  W +L
Sbjct: 61  LELARLILAWRNKLPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWSEL 120

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKG 228
             L    Y  WW L A+FL+IAS +W  RL EL  SSP  ++ A++RAEA  L      G
Sbjct: 121 SKLDTGDYAAWWQLTAEFLQIASAFWPARLSELGKSSPARHRNAILRAEAARLSAAKPSG 180

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
           P+IIAGSTGS+PATA L++ VA+ P G IVLPGLD  +P   W  +  +      +N   
Sbjct: 181 PVIIAGSTGSVPATADLIAAVADLPEGVIVLPGLDLAMPEGHWQMVAPEPAPGQHANPAS 240

Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
            +HPQY L+ LL  L + R DV  L     ++  R+ ++S++  P + +    T   E  
Sbjct: 241 RSHPQYGLSSLLKRLRLTRADVSILDRPGADLDRRAEILSRALAPAEATSDWGTWKSELP 300

Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKL 404
              +   F+DVALIEA NEREEA +IA+ALR++L+   +     +ALIT DRNLARRV  
Sbjct: 301 AGALTSAFNDVALIEAANEREEATAIAVALRLALERPGQDGESRAALITPDRNLARRVMA 360

Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
           EL+RFGI  D SAG PLS T   ++L  LL A  +  D +A   L+KHPLA+FG     L
Sbjct: 361 ELSRFGILADDSAGTPLSATPQGTLLQLLLEAALRPGDPVATVALLKHPLARFGLERDTL 420

Query: 465 SRAKNALE 472
             A  ALE
Sbjct: 421 ISATEALE 428


>gi|213961883|ref|ZP_03390149.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
 gi|213955672|gb|EEB66988.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
          Length = 909

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 143/1016 (14%), Positives = 282/1016 (27%), Gaps = 172/1016 (16%)

Query: 41   PLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN 100
            P  +  +      KR    L+  F E     +TI P    + D+         + +  L 
Sbjct: 16   PNKIERLVFVTTGKRPALFLKKHFAEQVKH-ATIAPEFIGIADLFTRISGVQSISNLPL- 73

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
                    L E            PD  ++                +   +        I+
Sbjct: 74   --------LFEFYDCYTKTCKDTPDSFEE---------------FLSWGQTALKDFSEID 110

Query: 161  TEEKKWEDL-HALKNEKYGMWW----------LLAADF---LKIASKYWTERLVELNASS 206
                  + +   +   K    W               F   L         +L E+    
Sbjct: 111  QYLVNPDKIFPYIHALKEAEHWSGMDELSEMQKKHLAFWNSLGDYYFALNSKLTEMGKGY 170

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                    +    ++L   T    I  G      A                         
Sbjct: 171  GGFIAKKAVEKLPKYLQTHTNTIHIFVGFNALSKAE------------------------ 206

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                                      Q+ +  +L  +  +          +  +   +  
Sbjct: 207  --------------------------QHVIQSILMDIGGE----IYWDGDTYFLNNPTHD 236

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
                      S           I +  +   ++ L        +A S+A  L+ +  +  
Sbjct: 237  AGFFLRKYTNSWRYYQTHKPKFIQSNYEKEKELYLTGVPKSINQAHSVAELLKNTPTKAL 296

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL-NDFMA 445
            +K+ALI AD NL   V   +     +++I+ G PL  T  + +  +              
Sbjct: 297  EKTALIIADENLLIPVLQAVQP-KTSVNITMGYPLQQTPLNDLFVAYFRLHLSKSFYHKD 355

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
            I  L+  P       E         +       N        L   V +           
Sbjct: 356  ILNLLSQPFLHTLLKE----EVVRHISQYIKTHNLTYITRKKLFESVDESEHEMLTLLFP 411

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                  L     + A+ L+  +   I P                                
Sbjct: 412  DAKGKALITTLIDNAITLIYRLKAQIDPESN----------------------------- 442

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                  L    +      L +   ++ E       +          ++   ++  + E  
Sbjct: 443  ----THLLTQEYAYRFFQLFNQLKQLQEQ-YGYIDSVKTLYHFYLDVLQKSSLNFRGEPL 497

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
              L ++G LESR L+FD +I+  +NEGV P   + +  +   ++  L L T ++     +
Sbjct: 498  EGLQVMGVLESRSLDFDRVIITSVNEGVLPLGKSGDSLIPYDVKHVLELPTFKERDAVYS 557

Query: 686  HDFEM-ANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDF-FDNLKKRGQCYLDWT 742
            ++F       + +        +++ +   SR++ +LL          +  K  + Y    
Sbjct: 558  YNFYRILQRAKQVHLFYDTEMDSLKSKEKSRFILQLLAEKIPTHKVIHQIKAPKVYPAIL 617

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
            R L                      +  S S +   I +P   Y +++L +      ++ 
Sbjct: 618  RPL-----TIEKTTAVIDALKVLAEKGISPSALTTYIRNPLTFYEQQVLHIYEEKEVEET 672

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPE-----INHLMKQIIDSHFEKENLPPHIDI--- 854
             +    G + H  + +L    +N+   E     +  L+   I+  FE+E           
Sbjct: 673  VEARTFGNIVHGTLEDLYTPFLNEILTEEHIKKMQPLVLPTIEKRFEEEYRSTDFRTGKN 732

Query: 855  -IWRHLFHKISHSFLEH---EEKIQSSIEKIFVNIPAKMAIESI----GIHLTGFADRID 906
             +  ++  K   SFL     E K  + I  +++    K+  ++      I+  G  DR+D
Sbjct: 733  WLIFNVIEKYVRSFLALELNEIKSGTEIIPLYLEQKIKIPFQAPHLPFPIYFKGIIDRVD 792

Query: 907  LLKSGFVDITDYKTGDNPKKE-----------TAQKLIDPQLSLEAAALKAGSFSQIDCR 955
               +G + I DYKTG   + +             +     QL   A  +           
Sbjct: 793  RR-NGVLHIIDYKTGIVEETDVRIKDWNNLITDIKYGKAFQLLTYAYMITKHLNIN-KKM 850

Query: 956  KVANLFYIRLKQKFKIDC--ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
             VANL + RL++        I  +K      +      +   E++  + +   PF 
Sbjct: 851  IVANLSFKRLQKGLLPFHTYIDKEKDYDVTAKTLALYSEYTEELLREIFDINTPFY 906


>gi|332519378|ref|ZP_08395845.1| hypothetical protein LacalDRAFT_0457 [Lacinutrix algicola 5H-3-7-4]
 gi|332045226|gb|EGI81419.1| hypothetical protein LacalDRAFT_0457 [Lacinutrix algicola 5H-3-7-4]
          Length = 917

 Score =  240 bits (613), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 145/1022 (14%), Positives = 315/1022 (30%), Gaps = 181/1022 (17%)

Query: 42   LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              L+++   +P+KRA   LR E   +   K+   P I S+ + VE+      + +  L  
Sbjct: 17   EDLSNIHFILPSKRAGVFLRQELSRVV-NKTIFSPYILSIEEFVEDLAQLKSVTNTEL-- 73

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
                      L      +    P   ++ +            +    A+ L    + I+ 
Sbjct: 74   ----------LFEFYNTYLQLTPKKEQEQFE-----------SFSKWAQILLQDFNEIDR 112

Query: 162  EEKKWEDL-HALKNEKYGMWWLL----------AADF---LKIASKYWTERLVELNASSP 207
                 + +   L   K    W L             F   LK+  K ++  L++      
Sbjct: 113  YLIPQDKIFDYLSAIKTLDHWSLDDNKTDVVKNYLKFWDKLKLYYKDYSTSLIKQKIGYQ 172

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                   +     +    +   + + G      A   ++  +    + A +   +D    
Sbjct: 173  GLIYREAVENIQHYSNTTSNKHVFL-GFNALNTAEETIIQELLK-NDLASIYWDIDKVFI 230

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
                +     +    +S   ++ +P                      + S  +       
Sbjct: 231  ENKIHDAGLFTRQHKNSWKYFANNP------------------FNWVSTSYSIP------ 266

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--DEN 385
                                          ++ +        +A +I   L      + +
Sbjct: 267  -----------------------------KNIEVYGVPKNIGQAKAIGNILSEIAVNNPS 297

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA---IFKLND 442
             K +A++  D NL   V   +      ++++ G PL +   +S+   L +      +   
Sbjct: 298  FKSTAVVLGDENLLVPVLNSIPIAVDKLNVTMGFPLKSIPLASLFEQLFSIHKKHTEKFY 357

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            +  + +L+ H      F    ++ A + +E +                  L     +K+N
Sbjct: 358  YKDVISLLSHQFISSLFVINEVNYALDLIEKIKKNNLVY-----------LSLSDLKKDN 406

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
            T V                            ++    +       ++I    K+      
Sbjct: 407  TQVHD--------------------------VLDLLFSNWDNKATIAIEIVFKIINKIKD 440

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
             + L++   L +L +     +L +   ++  T S +  +      I   L+  ET+  + 
Sbjct: 441  FLSLNKDSNLISLEYLYRFNSLFNELYRLNGTYSHVN-DISALFSIYNELLSSETLDFQG 499

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYI 681
            E    L ++G LESR+L+F+ +I+  +NEGV P     N F+   ++ + NL T  EK  
Sbjct: 500  EPLQGLQVMGMLESRVLDFENVIISSVNEGVLPSGKTNNSFIPFDVKLENNLPTYKEKDA 559

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                H + +    +++    +   +       SR++ +L +        N+         
Sbjct: 560  VYTYHFYRLLQRAKNIYILYNTEADILTGGEKSRFINQLELENIHQIKHNIIAPKVP--- 616

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
               K++   K+    +           R +S S +   I +P   Y + +L +  +   +
Sbjct: 617  ---KINSKLKEIEKTQAVLNQIKTVANRGFSPSSLTNYIRNPIDFYYQSLLGVKELEDVE 673

Query: 801  KDPDRTDRGTLFHNIITELIKKRINK-NTPEINHLMKQIID--------SHFEKENLPPH 851
            +       GT+ H+ +  L K  + K    E    MK ++D          +   ++   
Sbjct: 674  ETVAANTMGTVVHDTLETLYKPFLEKYIKVEDIERMKPLVDVTITHNFSRIYADGDMTKG 733

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSI---EKIFVNIPAKMAIESIG----IHLTGFADR 904
             ++I   +  +   +FL  E K        + + +   +++A+        + L G  DR
Sbjct: 734  KNLIIFEIAKRYVENFLSLEIKDLKKGNTIKILALENRSEIALNIPELNFKVQLRGTVDR 793

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQ-------------KLIDPQLSLEAAALKAGSFSQ 951
            +D   +G   I DYKTG                           Q+   A  +       
Sbjct: 794  VDEY-NGLTRIIDYKTGKVES-NQVAVIDWEDLTTDYKKYSKSFQILAYAYMMNKEKPLN 851

Query: 952  IDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD-----ELSEKSLKNLIEIVTLLQNGEQ 1006
                +   + +  L   F         +    D     E      + L +++  + N + 
Sbjct: 852  F-PIEAGIISFKNLNGGFIKFAKKETIRAKVKDTLITIETLNSFFEELKKLIIEICNPDI 910

Query: 1007 PF 1008
             F
Sbjct: 911  NF 912


>gi|313157476|gb|EFR56895.1| conserved hypothetical protein [Alistipes sp. HGB5]
          Length = 960

 Score =  240 bits (612), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 135/1084 (12%), Positives = 287/1084 (26%), Gaps = 194/1084 (17%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
             F  E+   L                  L+   +  P++RA              +    
Sbjct: 3    GFLEEVAGDLYARYG-----------EGLSERAVLFPSRRARLFFVDALTR-IAGRPMWQ 50

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN--KLPDIIKDLYPE 133
            P   ++ D++ E                    R+  +  L  ++      P      + +
Sbjct: 51   PEWVTVDDLMSEISGLHAGD------------RVRLITELYKVYSEFHTEPFDKFYFWGD 98

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKK-----WEDLHAL-------KNEKYGMWW 181
              L+   +       A+ L   I  I+  E          L  L       +        
Sbjct: 99   MLLTDFDTIDKYRIDAQMLFRNISEIKEIEADISYLTPAQLQILSFWSSLGEEADLSEEK 158

Query: 182  LLAADF---LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTG 237
                     L    + +  RLV L  +     Q A     AE           ++AG   
Sbjct: 159  RRFLAIWKTLGPVYRKFRRRLVSLGIAYNGMVQRAAADRIAEGAFAFPEPRRYVVAGFNA 218

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                  +L   +A            D +              +  +              
Sbjct: 219  LSECEKQLFKFLAVAAE-TDFYWDYDAYYKDNPEQEAGMFVRSNVALFPP---------- 267

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                                     R+     +                 +        +
Sbjct: 268  -------------------------RTEFAHDNMRGEKEVVSVAAVSNAVQCKYAAAILA 302

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            D+    A    +E   +A  L+ +L    K++A++  D NL   +   L      ++++ 
Sbjct: 303  DL----ARRRAQEDPEVAAGLKPAL---GKETAVVLTDENLLLPLLYALPADIGRVNVTM 355

Query: 418  GIPLSTTLHSSILTSLLNAIFKL--------NDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            G PL  +L  + +  L+                   +A ++ HP        +  +    
Sbjct: 356  GFPLRQSLAYTFVERLVELQNHRRKKGGGWTFYHADVAGILAHPYV-----AECDAALTR 410

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
             +    +R    S D   L                    ++ L +     A    +    
Sbjct: 411  TMHEEIVRDRWISVDAAWL-------------------GRNELLKRIFSPAAEWRELSDY 451

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             +  +                 ++  +    +  +          L  E           
Sbjct: 452  LLGVIAAVARQPYEGDDARQRVEFLAVIAEQVTKLRNSLDECDIELATEV---------- 501

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                           +  ++ R +    +  + E    + I+G LE+R ++F+ +IL  +
Sbjct: 502  ---------------YTSLLRRHLQTLRIPFEGEPLEGIQIMGILETRNVDFENVILLSM 546

Query: 650  NEGVWP-KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI--YTRSLREN 706
            N+  +P  + A++ F+   +++   L T E + G  A+ F         +     S  ++
Sbjct: 547  NDDNFPGNHVAQSSFIPYNLRAAYELPTPEHHEGVYAYYFYRLIQRAKSVHMLYCSHADD 606

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                  SR++ +L    G D             +         K     R          
Sbjct: 607  KSTGEPSRYIYQLDYESGFDVRKIEVGVDVNLAETAPI--EVAKDGEVMRRLERFVDAES 664

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
            P   S +   + +  P   Y   + +L+      ++ D    GT+ H  +  L  + + +
Sbjct: 665  PAALSPTAFFRYVACPLRFYFHSVARLEADDEISEEVDAPMFGTILHAAVQTLYARIVGE 724

Query: 827  NTP-----------EINHLMKQIIDS-HFEKENLPPHIDIIWRHLFHKISHSFLE----- 869
              P           E+   +++ I+  + + E            L   I   +L      
Sbjct: 725  EHPGQTLRAMIRSGEVAAAVERAINENYLQDERASAEDYTGNLLLVKDIVTRYLRGGVMP 784

Query: 870  HEEKIQSSIEKIFVNIPAKMAIE------SIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
            ++    +      +      +         + +   G ADRID+L  G + + DYKTG  
Sbjct: 785  YDAAHDA-FAVSGLEERVAYSFPFRAGERELEMKFGGIADRIDMLGDGALRVVDYKTGAP 843

Query: 924  P------------KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
                           +     I  Q  L +  L        +      L+Y+R   +   
Sbjct: 844  HLEFDGVESLFTGTGKQRLSNI-LQTLLYSMILHHTRGCDAEPA----LYYVRSMNRPDY 898

Query: 972  DCITNDKKKYSADE----LSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHL 1027
                +DK+            E+  + L   +  + +   PF         +    ++  +
Sbjct: 899  SPQLDDKQLGVRGARYTLYRERFEELLRAQLAEMYDPAVPF--RQCEDADTCKFCDFRII 956

Query: 1028 ARVA 1031
             +  
Sbjct: 957  CKRG 960


>gi|34540333|ref|NP_904812.1| hypothetical protein PG0517 [Porphyromonas gingivalis W83]
 gi|34396645|gb|AAQ65711.1| hypothetical protein PG_0517 [Porphyromonas gingivalis W83]
          Length = 960

 Score =  240 bits (612), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 129/1040 (12%), Positives = 267/1040 (25%), Gaps = 212/1040 (20%)

Query: 102  PVSNIQRLLELARLI----LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID 157
            P   + R   L  L      IW    P      + +  L         +  AK L   + 
Sbjct: 18   PYKELDRTALLFELYNTYKEIWPQAEPFDQFIFWGDIILKDFNEIDKHLVSAKALYSNLK 77

Query: 158  IIETEEKKWEDLHALKNEKYGMWW---------------LLAADF---LKIASKYWTERL 199
                 E  +  L   +      +W                   DF   L      + +RL
Sbjct: 78   DFREMENDFSFLSERQVAAIRSFWESFSPASGQMENGCQQSFLDFWKLLSPLYIRFNQRL 137

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGT-------------KGPIIIAGSTGSIPATARLM 246
             +             +    +                       +  G     PA   ++
Sbjct: 138  ADQGNGYHGMILRHTVDRLRQRETSVRELLSSADRGGNAHPDKYVFVGLFALSPAEEYIL 197

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              +             D  +  +  N       +                          
Sbjct: 198  VRM-KAEGICDFCFDDDLSLLHSAGNLTGTILDHNKEIF--------------------- 235

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                                          +  + +           K   D+ +I   +
Sbjct: 236  ---------------------------GKQTPWQESSENGQTSSLEDKPAPDIRIIRTAS 268

Query: 367  EREEAISIAIALRMSLDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPL 421
            E  +A  +   +     E         +A+I  D  +   V   L      I+++ G PL
Sbjct: 269  EIVQAKLLPQLIEELYPEGYSDKEGIETAIILPDTGMLMPVLNSLAETVGRINVTMGYPL 328

Query: 422  STTLHSSILTSLLNAIFK--------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            S +  S  +   +    +             A+  L+   L      +       N    
Sbjct: 329  SQSAISIFVEKWIRVQAEIRLIQKVPHFRTDAVLDLLNSVLLTPLLTDHSRDLLSNREVT 388

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                  +      +L  L+  R          P    +L +    L   + + +      
Sbjct: 389  KQYYVPEERLWGDELTDLLFSR----------PDSGQQLLDRLFLLLEKIAESM------ 432

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
                                  L           E      L      + + +    ++E
Sbjct: 433  ----------------------LFQPADSEYDQSEETNNMELEQIYHYRNMLNRLRGLVE 470

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                +  +      ++  L+ G ++  + E    L I+G  ++R L+F  LI+  +NEG 
Sbjct: 471  -SYAMDMSVRSAALLLQGLVSGVSIPFEGEPLVGLQIMGIDQTRSLDFKHLIILSVNEGK 529

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI--YTRSLRENNIPTI 711
             P    +   +   ++    L   E      ++DF         +     +  +      
Sbjct: 530  LPSRVYETTMIPYTLRRGYGLPVNEVNEATQSYDFFRLIQRAESVTMLYDARSDQLGGGE 589

Query: 712  ASRWLQRLLVL---------------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
             SR+++++  L                       ++K G+      R L+   ++     
Sbjct: 590  ESRYIRQMHFLFDMPLKVQELHLTGSLPHSPAICVRKEGEVLTRLHRFLECDNEESL--- 646

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                   E +    S S I   +  P   Y   +  +       +     D GT+ H  +
Sbjct: 647  -----DPEERLSALSASSINTYVACPLRFYFENVRGIREENASDELMAANDFGTVVHRSM 701

Query: 817  TELIKK----------RINKNTPEINHLMKQIIDSHFEKENLPPH--------IDIIWRH 858
              + K            +++     N  + +I+   + +E L           ++ ++  
Sbjct: 702  ELIYKPCCGGGIVSSDILSRWLDPKNATIARIVRQAYTEEYLRSANTQGALSGLNHLYCI 761

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDI 915
            +  K     LEH++ +      I      K +        + L G  DRID L      I
Sbjct: 762  MIEKYVRRILEHDKSLAP-FRYIDSERRVKGSFSLSNGSRVRLHGIIDRIDELNEECRRI 820

Query: 916  TDYKTGDNPK--------------KETAQKLID-PQLSLEAAALK-----AGSFSQIDCR 955
             DYK+GD                  ++ +      Q  L A   K      G  S++   
Sbjct: 821  VDYKSGDTTTELGSWDLMFQHPIAGKSKKHPTAIAQTLLYALMAKMQMENEGEGSELPLC 880

Query: 956  KV--ANLFYIRLKQKFKIDCITND-----KKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
                      + K+ +    +  +     ++    D++ E   + L   +  L + + PF
Sbjct: 881  PTIYGFKELYKQKEDYTGVVVLKEVGKAIEQITDFDQICEMFEERLRTCLDELFDPDIPF 940

Query: 1009 ISHLRLSEKSNIQSEYDHLA 1028
                 +  ++     +  L 
Sbjct: 941  TETEDI--RTCSYCPFASLC 958


>gi|298376810|ref|ZP_06986765.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298266688|gb|EFI08346.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 959

 Score =  240 bits (612), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 137/1056 (12%), Positives = 288/1056 (27%), Gaps = 191/1056 (18%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            + +    P +R     +    E+        P I ++ D+  +          ++     
Sbjct: 21   SRLAFVFPNRRTGLFFQKYLSEVADI-PLFSPTILTINDLFIQLSGKQSADRISM----- 74

Query: 105  NIQRLLELARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                L  L  + I    +         + E  L+        +  A+ L   +  +   E
Sbjct: 75   ----LFTLYDIYIRQSGSTETFDEFLYWGEMLLNDFDDIDKYMANARMLFSNVTDLREIE 130

Query: 164  KKWEDLHALKNEKYGMWWL---------LAADFLK------IASKYWTERLVELNASSPV 208
              ++ L   +      +W              FL          + +   L         
Sbjct: 131  NDFDFLSDEQIAAIRSFWSSFYPRGDTPNQQQFLAVWQVLYDLYEEFRATLAAEGKGYEG 190

Query: 209  GYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                 ++ +             I+  G      +                          
Sbjct: 191  MIFREVVESMERGESPDLPYEQIVFVGLNALSVSEE------------------------ 226

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
                                            L    I       + +   +   ++   
Sbjct: 227  ---------------------------RFLAQLQKRKIADFYWDYVSDKVTDPDNKASYF 259

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL------RMS 381
                     S M        K+P  +K  +++ +I   +   +A  +   L         
Sbjct: 260  VSRNRKSFPSSM--------KLPPEEKVKTEIEVIGIPSGIGQAKHVYTLLSDWCKEAEM 311

Query: 382  LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-- 439
              E   ++A+I  D +L   V   +      I+++ G PL+ T  +S++  +L       
Sbjct: 312  SSEEALRTAVILPDEHLLIPVLNAIPEQIRRINVTMGYPLAGTPVASLIEYILALQKNVR 371

Query: 440  ------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                  L  F  +  ++ H       PE       ++L       NK      +L     
Sbjct: 372  YIDRNPLFYFRDVLPVLNHRYILSTSPEI-----ISSLVKEITENNKIYISHTELGKT-- 424

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                              +            D++++ +  L                S  
Sbjct: 425  --------------PLLEILFTPVTGVEAFSDYLIKVLEELNKVM------------SAL 458

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +            D  ++    +F    +    +    IE           +  ++ R+ 
Sbjct: 459  SDEEEEDAPQRTNDLEQEFIFHYFTTVNRMKEVMKDARIE------MKIDTFFRLLKRVT 512

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            D  T+    +  S L I+G LE+R L+FD LI+  +NEG++P+  A N F+   ++    
Sbjct: 513  DTITIPFHGDPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAANSFIPYNLRRGFG 572

Query: 674  LKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNL 731
            L T E      A+ F        H+      R N + T   SR++ +L           +
Sbjct: 573  LPTYEHQDSVWAYHFYRLIERASHVSLLYDTRSNGLQTGEVSRFVHQLHYH------YEV 626

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP---RTYSFSEIKQLINDPYAVYAR 788
              R +  +               +          +    +  S S I   ++ P   Y  
Sbjct: 627  PMRDKLVVYNVSSSKTPPLAVPKREDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFS 686

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------------KKRINKNTPEINHLM 835
             +  +       +  +    G++ H ++ EL              K            + 
Sbjct: 687  VVEGIREEEEVSETIESDVFGSILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIA 746

Query: 836  KQIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI-- 891
            +      F+ E +       +    +  K     LE + K+      I         I  
Sbjct: 747  RAFASEFFKTEVVRSLTGQNYLIGEMIRKYVEKILERDGKLTP-FVYIESERKINGLISL 805

Query: 892  -ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP----------QLSL 939
             +   I L GF DR+D ++   + I DYK+G       + + L +           Q+ +
Sbjct: 806  SDYSEIRLKGFIDRVDEVRD-AIRIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFM 864

Query: 940  EAAALKAGSFSQIDCRKVANLFYIR-LKQKFKIDCI------TNDKKKYSADELSEKSLK 992
                    + ++    +   ++Y+R L        +         +K       ++   +
Sbjct: 865  YCWMYAHLTENKGKTIQP-GIYYVRSLFADPFDPSVYHRIERGKSEKVEDFSGYAQAFEE 923

Query: 993  NLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             L   +  + N E PF      + K+     +  + 
Sbjct: 924  GLRGCLDEIFNPEIPFT--QTPTGKACSYCPFKGIC 957


>gi|260061424|ref|YP_003194504.1| hypothetical protein RB2501_07485 [Robiginitalea biformata HTCC2501]
 gi|88785556|gb|EAR16725.1| hypothetical protein RB2501_07485 [Robiginitalea biformata HTCC2501]
          Length = 911

 Score =  240 bits (612), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 145/1038 (13%), Positives = 284/1038 (27%), Gaps = 167/1038 (16%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
              F   ++  L            P      +S    +P+KRA   L++   +     + +
Sbjct: 2    QSFLDSVLDDL------------PEWQSDPSSFVFVLPSKRAGFFLKNRMAQR-ATSTFL 48

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
             P I S+ D V E        + +L            L RL     ++     +      
Sbjct: 49   SPHIWSIEDFVAEISGLRYAGTLHL------------LFRLYEACLDQEGIQQE------ 90

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
                  S A+       L    +  +      + L                  L     +
Sbjct: 91   ------SFADFTKWGPTLLQDFNEADRYLVDTDRLFE------------TLAALNEIRNW 132

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
              +             QIA  +  A    +                     ++       
Sbjct: 133  TPDGSSTPMM----DRQIAFWKNLAPIYSRFRTN-----------------LAGEGLAYQ 171

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
            G             A             ++  T          +++  L  K        
Sbjct: 172  GMAYRAAASQLASYAAARGDVRYIFIGFNALNTAED-------RIIQQLLEKPGSRIYWD 224

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
               + +                 D  +       I N      ++ ++       +A   
Sbjct: 225  ADPHYIDNPVHDAGHFMR-KHLRDWPSLRTGLAGIQNHFASPRNIRMVGIPKSVAQAKYC 283

Query: 375  AIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
               L     E+ +     AL+  D  L   V   L      ++I+   P+  +  + +  
Sbjct: 284  GSLLGELYAEDPEGIENTALVLGDEALLTPVLHALPAEIPAVNITMSYPIRHSPMAQLFD 343

Query: 432  SLLNA----IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             LL        +      +  L+ HP  +  F        +    +  +R N    D   
Sbjct: 344  LLLEMRIRKTAEGWRVPQLLVLIAHPYLQSWFRSLDFEPTRGR--MYLIRENLYYADSDA 401

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
            L+++ L     +          S  ++  +++   L     +   PL             
Sbjct: 402  LEAMGLPVTVRELLLPPPGAPPSDHAKNLEDITRALKPVYQKAGDPLQ------------ 449

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
                                       L +      L +   ++      +  +      
Sbjct: 450  ---------------------------LEYLFHFNQLFNQLIQLTGAYPFVS-DLKSLQL 481

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +  +L+  E V  + +  S L ++G LESR L+FDT+I+  +NEG+ P   +   F+   
Sbjct: 482  LYRQLLADEKVDFEGQPLSGLQVMGMLESRNLDFDTVIITSVNEGILPSGKSNASFIPFD 541

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLREN-NIPTIASRWLQRLLV-LGG 724
            ++ +  + T ++      + F       R ++   +           SR++ +L      
Sbjct: 542  VKREFGMPTYKEKDAVYTYHFYRLLQRARRVVICYNTEPEVIEGGEPSRFINQLRTDPVL 601

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                +      +   +   +L         +R       E     +S + + + I DP  
Sbjct: 602  GPQTELAFAVPETGAERPGELRIHKGPELLER-----LQEMASSGFSPTSLSRFIADPLL 656

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----KNTPEINHLMKQII 839
             Y R +L LD     ++       GT+ H+ + EL +          N  E+ +     I
Sbjct: 657  FYQRNVLGLDETEELEETVAANTFGTVLHDALEELYRPLEGAFLNRDNLAELRNRSDSAI 716

Query: 840  DSHFEKENLPPHIDI----IWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAKMAIES 893
            +  F K  L          I   +  +    FL  E        I  + V    +  +  
Sbjct: 717  ERAFRKNYLRDGKARGKNLIALQVLRQHLDHFLGSEVTRAEKHRIRILGVEKKFRQELAV 776

Query: 894  IG----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKE-----------TAQKLIDPQLS 938
             G    + L G  DRI+ +  G V I DYKTG     E              +    Q+ 
Sbjct: 777  PGLQHPVTLKGTVDRIEEV-DGQVRIVDYKTGKVTPAELRVSEWESLRTEPDRAKAFQVL 835

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQK---FKIDCITNDKKKYSADELSEKSLKNLI 995
              A        S     K   + +  L      F +       ++    +      + L 
Sbjct: 836  CYALLYA--GDSGTLPEKAGVVSFKNLGAGYQWFGVRTAPRQTEEQIHADTLTAFREVLH 893

Query: 996  EIVTLLQNGEQPFISHLR 1013
            E++  + N   PF +   
Sbjct: 894  ELLLEVFNPAVPFEARPA 911


>gi|228471357|ref|ZP_04056158.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
 gi|228306858|gb|EEK15971.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
          Length = 999

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 152/1040 (14%), Positives = 325/1040 (31%), Gaps = 120/1040 (11%)

Query: 43   LLASVTIYVPTKRAIQEL-RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
             L    + VPTKRA   L R    ++  K +TILP I ++ + + E     +L +  L  
Sbjct: 23   PLRDQLVVVPTKRAATFLQRELVAQLQDKPATILPRIVTIDEWITEMSGRVILDNTAL-- 80

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
                   +  L  +   +         +      LS             +LA  +  +E 
Sbjct: 81   -------ISILYEVYATYLANQKLGQVETDQMLSLSQTERMLRDFQD-MDLA--LADVEM 130

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP--VGYQIALMRAEA 219
                 E+L  L +  Y           +   ++W   L + +  SP       A +  + 
Sbjct: 131  LLINLENLDDLDSYAYLDEEER-----EAIKEFWRG-LSDQDLDSPQGGYRHFATVWRDI 184

Query: 220  EHLMKGTKGPIIIAGSTGS-------IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
              L       + +A   G+          +  L+  +  +   A+ L          ++N
Sbjct: 185  YQLFNVRLADLKVAYRAGAYRIVAEDTFTSDDLLRALRRYSGSAVSLVNF-----VGLYN 239

Query: 273  TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
                +   I    +  +   Q  L      +D + +  + L N  ++      ++    L
Sbjct: 240  LTPAERAIIKKLQSADADALQVQLYWQRVSIDAEGDFNEHLYNTIDKNA---KLLGGVVL 296

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALI 392
              D +     ++    + +  +    V  + A+   +E  +    LR          A++
Sbjct: 297  DEDFTRKYAPEVHLLSLNSTIQQPQVVNDLIAE-ITQEDDTALEELR---------IAIV 346

Query: 393  TADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              D      +   L      +++++ G PL  T  ++ +                  L  
Sbjct: 347  LNDEKTLIPLMNSLKQPACTSLNVTMGYPLQYTSVATWIRRY---------------LNI 391

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            + L           +   +   + L          DL + ++DRIA           ++ 
Sbjct: 392  YGLVSSSETRVERVKLTCSRLKLWLTAPLTRKLFGDLTTALMDRIALHHYAITASELRTI 451

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            + E   +    +   +L  +TP +T           L +                D+   
Sbjct: 452  IEEVAGDADEAVRQRLLDLLTPSLTGVGLLTRIGQLLELLKGLTTATDEETEEATDDDES 511

Query: 572  LPNLWFEEEGKTLSSLFSKII------ETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
            + ++   E    +    +++       E    +         ++ +L+   ++  +    
Sbjct: 512  IDHVILSEALDQIVRYVTQVSNLLQSSEGIHHLLNAPKPVAYLLEQLMAVGSIPFEGAPL 571

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
              L ++G LE+R L FD +I+  + EG  PK++     +  +++S  ++ T        A
Sbjct: 572  EGLQVMGFLETRTLTFDYVIMLNVQEGDLPKSSHTTTLIPDMLRSAFDMTTYRTEDDTNA 631

Query: 686  HDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            + F     G + +   +  R  +      SR++ ++  L      ++        LD   
Sbjct: 632  YHFYRLIQGAKRVYLLQDTRPKSISSMEPSRYVDQIRYLTNLSLDESTYADS---LDARN 688

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
            + + T  +   +  +    + +  +T+S S++    N  Y  Y ++I  +          
Sbjct: 689  EQEQTVAKTDEEVHRYMEQIASGDKTFSPSDLITYYNCAYQFYLKKIKGIGEPRQEPGVV 748

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE-----NLPPHIDIIWRH 858
             + + G++ H  +    K      T E++ L   +     ++      +     D I   
Sbjct: 749  TQIELGSMVHAYLEWFYKGLKK--TSEVSDLEHTVSRDKLQELYKKIVSDKSAPDEILLT 806

Query: 859  LFHKISHSFLE---HEEKIQSSIEKIFVNIP-----AKMAIESI---GIHLTGFADRIDL 907
               +     +E      +   S++ +           +   ++     IHLTG  DR+D+
Sbjct: 807  DLERYISKAIEIDKRLLQAGHSLQLLASETKMTNLCFEWTDDNGQNHTIHLTGQPDRVDI 866

Query: 908  LKSGFVDITDYKTGDNPKKETAQK-------------------LIDPQLSLEAAALKAGS 948
            +      I DYKTG   K +T ++                       Q  L A      +
Sbjct: 867  IDGKDYRIVDYKTGAIKKPKTVEELDTDTLDAWRKMASNCKLGGYILQSCLYAMLYAQLA 926

Query: 949  FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
               I   +     Y           I  D+   S  E    +L  L ++VT   N     
Sbjct: 927  EEGISKIQPT--LY------SLAPAIPADEGAISFKETV--ALDELKKLVTHYLNELVAL 976

Query: 1009 ISHLRLSEKSNIQSEYDHLA 1028
                          +Y  + 
Sbjct: 977  KFDQTKVLDVCKYCDYKTIC 996


>gi|150007829|ref|YP_001302572.1| hypothetical protein BDI_1187 [Parabacteroides distasonis ATCC 8503]
 gi|149936253|gb|ABR42950.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
          Length = 959

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 138/1056 (13%), Positives = 288/1056 (27%), Gaps = 191/1056 (18%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            + +    P +R     +    E+        P I ++ D+  +          ++     
Sbjct: 21   SRLAFVFPNRRTGLFFQKYLSEVADI-PLFSPTILTINDLFIQLSGKQSADRISM----- 74

Query: 105  NIQRLLELARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                L  L  + I    +         + E  L+        +  A+ L   +  +   E
Sbjct: 75   ----LFTLYDIYIRQSGSTETFDEFLYWGEMLLNDFDDIDKYMANARMLFSNVTDLREIE 130

Query: 164  KKWEDLHALKNEKYGMWWL---------LAADFLK------IASKYWTERLVELNASSPV 208
              ++ L   +      +W              FL          + +   L         
Sbjct: 131  NDFDFLSDEQIAAIRSFWSSFYPRGDTPNQQQFLAVWQVLYDLYEEFRATLAAEGKGYEG 190

Query: 209  GYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                 ++ +             I+  G      +                          
Sbjct: 191  MIFREVVESMERGESPDLPYEQIVFVGLNALSVSEE------------------------ 226

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
                                            L    I       + +   +   ++   
Sbjct: 227  ---------------------------RFLAQLQKRKIADFYWDYVSDKVTDPDNKASYF 259

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL------RMS 381
                     S M        K+P  +K  +++ +I   +   +A  +   L         
Sbjct: 260  VSRNRKSFPSSM--------KLPPEEKVKTEIEVIGIPSGIGQAKHVYTLLSDWCKEAEM 311

Query: 382  LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-- 439
              E   ++A+I  D +L   V   +      I+++ G PL+ T  +S++  +L       
Sbjct: 312  SSEEALRTAVILPDEHLLIPVLNAIPEQIRRINVTMGYPLAGTPVASLIEYILALQKNVR 371

Query: 440  ------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                  L  F  +  ++ H       PE       ++L       NK      +L     
Sbjct: 372  YIDRNPLFYFRDVLPVLNHRYILSTSPEI-----ISSLVKEITENNKIYISHTELGKT-- 424

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                              +            D++++ +  L                S  
Sbjct: 425  --------------PLLEILFTPVTGVEAFSDYLIKVLEELNKVM------------SAL 458

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +            D  ++    +F    +    +    IE           +  ++ R+ 
Sbjct: 459  SDEEEEDAPQRTNDLEQEFIFHYFTTVNRMKEVMKDARIE------MKIDTFFRLLKRVT 512

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            D  T+    E  S L I+G LE+R L+FD LI+  +NEG++P+  A N F+   ++    
Sbjct: 513  DTITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAANSFIPYNLRRGFG 572

Query: 674  LKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNL 731
            L T E      A+ F        H+      R N + T   SR++ +L           +
Sbjct: 573  LPTYEHQDSVWAYHFYRLIERASHVSLLYDTRSNGLQTGEVSRFVHQLHYH------YEV 626

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP---RTYSFSEIKQLINDPYAVYAR 788
              R +  +               +          +    +  S S I   ++ P   Y  
Sbjct: 627  PMRDKLVVYNVSSSKTPPLAVPKREDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFS 686

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------------KKRINKNTPEINHLM 835
             +  +       +  +    G++ H ++ EL              K            + 
Sbjct: 687  VVEGIREEEEVSETIESDVFGSILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIA 746

Query: 836  KQIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI-- 891
            +      F+ E +       +    +  K     LE + K+      I         I  
Sbjct: 747  RAFASEFFKTEVVRSLTGQNYLIGEMIRKYVEKILERDGKLTP-FVYIESERKINGLISL 805

Query: 892  -ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP----------QLSL 939
             +   I L GF DR+D ++   + I DYK+G       + + L +           Q+ +
Sbjct: 806  SDYSEIRLKGFIDRVDEVRD-AIRIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFM 864

Query: 940  EAAALKAGSFSQIDCRKVANLFYIR-LKQKFKIDCI------TNDKKKYSADELSEKSLK 992
                    + ++    +   ++Y+R L        +         +K       ++   +
Sbjct: 865  YCWMYAHLTENKGKTIQP-GIYYVRSLFADPFDPSVYHRIERGKSEKVEDFSGYAQAFEE 923

Query: 993  NLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             L   +  + N E PF      + K+     +  + 
Sbjct: 924  GLRGCLDEIFNPEIPFT--QTPTGKACSYCPFKGIC 957


>gi|256820664|ref|YP_003141943.1| hypothetical protein Coch_1837 [Capnocytophaga ochracea DSM 7271]
 gi|256582247|gb|ACU93382.1| conserved hypothetical protein [Capnocytophaga ochracea DSM 7271]
          Length = 909

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 141/1022 (13%), Positives = 291/1022 (28%), Gaps = 186/1022 (18%)

Query: 42   LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              +  +      KR    L+  F E     +TI P    + D+                 
Sbjct: 17   DKIERLVFVTTGKRPALFLKKHFAEQIKH-ATIAPEFIGIADLFTRISDVQ--------- 66

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            P+SN+  L E     +      PD  ++                +   +        I+ 
Sbjct: 67   PISNLPLLFEFYDCYVKTCKDTPDSFEE---------------FLSWGQTALKDFSEIDQ 111

Query: 162  EEKKWEDL----HAL-------KNEKYGMWWLLAADF---LKIASKYWTERLVELNASSP 207
                 + +    HAL         ++          F   L         +L ++     
Sbjct: 112  YLVNPDKIFPYIHALKEVEHWSGMDELSEMQKKHLAFWNSLGDYYFALNSKLTKMGKGYG 171

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                   +    ++L   +    I  G      A                          
Sbjct: 172  GFIAKKAVEELPKYLQTHSNSIHIFVGFNALSKAE------------------------- 206

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
                                     Q+ +  +L  L  +          +  +   +   
Sbjct: 207  -------------------------QHVIQSILMDLGGE----IYWDGDTYFLNNPTHDA 237

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
                     S           I +  +   ++ L        +A S+A  L+ +  +  +
Sbjct: 238  GFFLRKYINSWRYYQTHKPKFIQSNYEKEKELYLTGVPKSINQAHSVAELLKNTPAKALE 297

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL-NDFMAI 446
            K+ALI AD NL   V   +     +++I+ G PL  T  + +  +              I
Sbjct: 298  KTALIIADENLLIPVLQAVQP-KTSVNITMGYPLQQTPLNDLFVAYFRLHLSKSFYHKDI 356

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              L+  P       E         +       N        L   V +      +     
Sbjct: 357  LNLLSQPFLHTLLKE----EVVRHISQYIKTHNLTYITRKKLFESVDETEHEMLSLLFPD 412

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                 L     + A+ L+  +   I P                                 
Sbjct: 413  AKGKALIITLIDNAITLIYRLKAQIDPESN------------------------------ 442

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                 L    +      L +   ++ E       +          ++   ++  + E   
Sbjct: 443  ---THLLTQEYAYRFFQLFNQLKQLQEQ-YGYIDSVKTLYHFYLDVLQKSSLNFRGEPLE 498

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L ++G LESR L+F+ +I+  +NEGV P   + N  +   ++ +L L T ++     ++
Sbjct: 499  GLQVMGVLESRSLDFERVIITSVNEGVLPLGKSDNSLIPYDVKYELELPTYKERDAVYSY 558

Query: 687  DFEM-ANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
            +F       + +        N++ +   SR++ +LL                       +
Sbjct: 559  NFYRILQRAKQVHLFYDTEMNSLKSKEKSRFILQLLAEKIPTH------------KVVHQ 606

Query: 745  LDYTTKQPHYKRPK--------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
            +      P   RP                  +  S S +   I +P   Y +++L++   
Sbjct: 607  IKAPEVYPAVLRPINIKKTTSVIDALKALAEKGISPSALTTYIRNPLTFYEQQVLQVYEE 666

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE---------INHLMKQIIDSHFEKEN 847
               ++  +    G + H I+ +L    +N+   E         +   +++  +  +   +
Sbjct: 667  KEVEETVEARTFGNIVHGILEDLYTPFLNEILTEEHIKKMQLLVLPTIEKRFEEEYRSTD 726

Query: 848  LPPHIDIIWRHLFHKISHSFLEH---EEKIQSSIEKIFVNIPAKMAIESIG----IHLTG 900
                 + +  ++  K   SFL     E K    I  +++    K+  ++      ++  G
Sbjct: 727  FRTGKNWLIFNVIEKYVRSFLTLELNEIKSGIEIIPLYLEQKIKIPFQASHLPFLVNFKG 786

Query: 901  FADRIDLLKSGFVDITDYKTGDNPKKE-----------TAQKLIDPQLSLEAAALKAGSF 949
              DR+D   +G + I DYKTG   + +             +     QL   A  +    F
Sbjct: 787  IIDRVDRR-NGVLHIIDYKTGIVEETDVRIKDWNNLITDIKYGKAFQLLTYAYMITQ-HF 844

Query: 950  SQIDCRKVANLFYIRLKQKFK--IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
               +   VANL + RL++ F      I   K      +      +   +++  + + E+P
Sbjct: 845  KIDEPMIVANLSFKRLQKGFLRFHTYIDKVKDCDVTAQTLALYSQYTEQLLQEIFDIERP 904

Query: 1008 FI 1009
            F 
Sbjct: 905  FY 906


>gi|167753575|ref|ZP_02425702.1| hypothetical protein ALIPUT_01852 [Alistipes putredinis DSM 17216]
 gi|167658200|gb|EDS02330.1| hypothetical protein ALIPUT_01852 [Alistipes putredinis DSM 17216]
          Length = 948

 Score =  238 bits (606), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 128/1068 (11%), Positives = 282/1068 (26%), Gaps = 179/1068 (16%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
             F +E+   L +                ++S+++  P++RA             ++    
Sbjct: 3    GFLQEVAADLYDRYG-----------DDISSLSVLFPSRRARLFFIDALS-GIAERPLWQ 50

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII--KDLYPE 133
            P   ++ +++ E     +              R+  +  L  ++    P+       + E
Sbjct: 51   PRWTTIDELMSEISGLRIGD------------RVRLVTELYKVYSEFHPESFDKFYFWGE 98

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193
              L+   +    +  A  L   +  I+  E     L  +               LKI   
Sbjct: 99   MLLTDFDTIDKYLIDADMLFRNLADIKELEADVSYLSPV--------------QLKII-- 142

Query: 194  YWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
             +     +  + S    +   +         G                    + ++    
Sbjct: 143  AFWANFTDETSLSEEKRRFLAV-----WQTLGPVYRTF-----------RERLRSLGMAY 186

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
             G +                                        +L  FL    E     
Sbjct: 187  TGMVHRA------AAERIKAGGFAFPESRRFVVAGFNALSECEKRLFKFLSTAAETDFYW 240

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
               +                                 +  +    +  I   +   +   
Sbjct: 241  DYDTYYTDNADQEAGMFLREN----RILFPARRELSHDHFRSPKRIEAISTVSNAVQCKY 296

Query: 374  IAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            +A  LR    E     K++A++  D NL   +   L      ++++ G PL  +L  S +
Sbjct: 297  VASILRELAAEQGPLGKETAVVLTDENLLLPLLHALPAEIGKVNVTMGYPLKQSLSYSFV 356

Query: 431  TSLLNAIFKL--------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
              L+                   +  L+ HP              +   E+V  R    +
Sbjct: 357  ERLIELQNHARQKEGKPLFYHADVLGLLSHPYI---LESDPSRIVRMQEEIVRNRRITVA 413

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
             + +    L+                         E      D++L  I  +        
Sbjct: 414  AEWLACTPLLATLFR------------------SVEGWRGFSDYLLAVIAQIARMPYEDT 455

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                        +  V  L  +  +  +   +L   E                   + + 
Sbjct: 456  E----------ARRRVEFLNVISEEVIKLRNSLNNCEI------------------ELSI 487

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
              +  ++ R +    +  + E    + ++G LE+R L+F  +IL  +N+  +P +     
Sbjct: 488  SIYTSLLRRHLQTLRIPYEGEPLEGIQVMGILETRNLDFRNVILLSMNDDNFPGSVVTGT 547

Query: 663  -FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRL 719
             F+   +++   L T E + G  A+ F           +   +  ++      SR++ +L
Sbjct: 548  SFIPYNLRAAYALPTPEHHEGVYAYYFYRLLQRAENVRMLYCAHADDKTTGEQSRYIYQL 607

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                  +     ++ G              KQ               P   S +   + +
Sbjct: 608  EYETPFEILR--REVGIDVNRMETLPIEVPKQGETAEKLARFLAPDDPVRLSPTAFFRYV 665

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
              P   Y   + +L+      ++ D    GT+ H  +  L    + K        ++ + 
Sbjct: 666  ACPLRFYFHSVARLEPDDEISEEVDAPMFGTILHAALQRLYAPFVGKTG--YGEALRALT 723

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSF------------------LEHEEKIQSSIEKI 881
             S   ++ +   I+  +          +                  +   +         
Sbjct: 724  RSSEVEKAVVAAINENYLQDVEATVEDYSGNLLLVKDIVIRYIRGGVLPYDAAHDDFTVE 783

Query: 882  FVNIPAKMAIE------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNP----KKETAQK 931
             +               S+ +   G ADRID L  G + + DYKTG+        E   +
Sbjct: 784  GLEERIGQEFAFESAGKSLRVVFGGLADRIDRLPDGTLRVVDYKTGEPHLDFQGVEALFR 843

Query: 932  LID-------PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK----K 980
                       Q  L +  L        +      L+Y+R   +        D++     
Sbjct: 844  GEAKQRQSNILQTLLYSMMLFHSRGVDAEPT----LYYVRAMHRDDYSSRLVDRELGRTG 899

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                E  E   + L E +  + +   PF      +E +    ++  + 
Sbjct: 900  VRYSEYREPFERLLRETLAEMFDPAIPFR-QCEDAEHTCRYCDFREIC 946


>gi|212702576|ref|ZP_03310704.1| hypothetical protein DESPIG_00600 [Desulfovibrio piger ATCC 29098]
 gi|212674017|gb|EEB34500.1| hypothetical protein DESPIG_00600 [Desulfovibrio piger ATCC 29098]
          Length = 993

 Score =  237 bits (604), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 136/1084 (12%), Positives = 302/1084 (27%), Gaps = 160/1084 (14%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
            ++F+     PF   +  A     L    R             I VP  R  + L   +  
Sbjct: 6    HIFS--WQHPFLPALKQA---TDLWSGGRPG--------DAVIIVPHNRPWRYLVDIYAA 52

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
                 + +LP + SL D+V         +            R   L   + + R+ + D+
Sbjct: 53   --AGATGLLPKVLSLPDMVRLWRMHASPVPL----------RTACLLDRVALLRDCVLDL 100

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
              + +        ++P   +     LA++++ +  +    +DL  +   +          
Sbjct: 101  ADEDHELEKRFGDLAPGAFLPWGIRLANLLEELLGQNMVTDDLPFID--EVSPPAAALLG 158

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEA---EHLMKGTKGPIIIAGSTGSIPATA 243
             L      +   L +   ++P        R      + L      P+++AG +       
Sbjct: 159  ALGRIRDAYVAALAQKGWTTPGHDFWLAARHAEDIPDLLRPADGHPVLLAGFSLLTETED 218

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             L+ ++     GA V    D  +               ++ +     H Q        +L
Sbjct: 219  ILLRSLWQA--GARVCLHTDPAL-------ARHDEDGRSAVHWACQEHVQ--------WL 261

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
               +   +     +                      +        + +  K       ++
Sbjct: 262  QRWQATARPWEEDTPSPAD--------------DGQKWHYFAGYDLHSQLKALQ--RDLD 305

Query: 364  ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
            A +E                     + L+T    L   +     +    ++IS G PL  
Sbjct: 306  APSEA------------------STAILLTHGDLLLPVLHHLPDKE---VNISMGYPLDR 344

Query: 424  TLHSSILTSLLNAIFKL-----NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
            +    +L SL              +  +   ++HP          L  +    E    + 
Sbjct: 345  SPLFHLLDSLFRLHEGRDKDGLFYWRHLLACLRHPYLGM------LQASAPEGETGTGQP 398

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
             +     ++ +     R+    +           ++E       L     +         
Sbjct: 399  LRPLLRRLERRIRSGRRLVALDDLLDTLAEGEGCADETTGPDGPLPPPSPERALLEELLH 458

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN--LWFEEEGKTLSSLFSKIIE-TG 595
                      +++      +     +            L  E   + +     ++     
Sbjct: 459  LLLEDFGDVATLAGLAGALLRLSDFLTRHGQAVWERFPLDAEALYRLVRHCVPELQHNAL 518

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
            S  +        +  +L+  + +  + +    + +LG LESRLL FD + +    + V P
Sbjct: 519  SGEEMLPRLLHGLARQLLQQQRIPFEADPLGGVQVLGMLESRLLQFDRIFIVDATDDVLP 578

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT---- 710
                ++P L   ++  L L  A +    A+H         R + +     +         
Sbjct: 579  GAPGQDPLLPDSLRRILGLPDARRRERAASHTLYRLCACAREVRFYWQESQGRSGLMDSK 638

Query: 711  -IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK----RPKPFPPLEA 765
               SR++++L+          + K G   L                    +       + 
Sbjct: 639  KARSRFVEQLIW-AHEQRTGAILKPGTPPLAVATCAVAPMPPRELSLKRNQALQDAMRDF 697

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
                 S + +   +  P +   + + +   +    +  D  + G++ H+++ +L +    
Sbjct: 698  LAAPISPTALDTYLRCPLSFVWKHLCRFRPVQEVNEKDDPAEVGSVLHDVLQQLYRPYRG 757

Query: 826  KNTPE---INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
            K          +M+  +    EK +L   +      +F   +   LE     Q +   + 
Sbjct: 758  KPVGAGTFDMAVMRAELQHQIEKHDLRTQLPPDSLMMFSMAAPRRLEEYLCNQPAATILE 817

Query: 883  VNIPAKMAI--ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-------------- 926
            +  P    I          G  DR+D  + G + I DYKTG                   
Sbjct: 818  LEYPLTQVIRCNGREYTFKGRLDRLDRREDG-LCIVDYKTGIINSPAGALWDDEALFLQM 876

Query: 927  ETAQKLIDP----------------------QLSLEAAALKAGSFSQIDCRKVANLFYIR 964
               +    P                      QL      L A  F+++      +   + 
Sbjct: 877  AQVRDARLPLEDRRRLAAVVFDQLAEKLRMIQLPAYLCMLHAAGFTELH-----DAALVE 931

Query: 965  LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
            L+ K +   +   +     DE   +    L  ++  +++G   F        +     +Y
Sbjct: 932  LRDKGREYWLFGPRLDLDNDERIRQCFDVLSLLLWHMEHGPD-FTGRP---GEGCRWCDY 987

Query: 1025 DHLA 1028
              L 
Sbjct: 988  QALC 991


>gi|218256866|ref|ZP_03474368.1| hypothetical protein PRABACTJOHN_00020 [Parabacteroides johnsonii DSM
            18315]
 gi|218225911|gb|EEC98561.1| hypothetical protein PRABACTJOHN_00020 [Parabacteroides johnsonii DSM
            18315]
          Length = 988

 Score =  237 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 157/1083 (14%), Positives = 318/1083 (29%), Gaps = 169/1083 (15%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
            PF  ++     +    E            + +    P +R     +    E++ +K    
Sbjct: 3    PFLYQVASLFYSKYGAEV-----------SRLAFVFPNRRTGLFFQKYLSEVS-EKPLFS 50

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIW-RNKLPDIIKDLYPES 134
            P I ++ D+  +          ++         L +L  + L    +         + E 
Sbjct: 51   PTILTINDLFVQLSGKQTADRISM---------LFKLYDIYLNHSGSSETFDEFLYWGEM 101

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------------ 182
             L+        +  A+ L   +  +   E  +  L   +      +W             
Sbjct: 102  LLNDFDDIDKYMVDARMLFTNVTDLREIENDFSFLSPEQIAAIRTFWSSFYPKGDTPNQE 161

Query: 183  ---LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGS 238
                    L        E L              ++    ++         ++  G    
Sbjct: 162  QFLAVWQILYALYTDLRETLAAEGKGYEGMIFREVVEQMEKNECCDLPYTKVVFVGLNAL 221

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
              A  R +S +                I    W+  + K T+  +  + +      +L +
Sbjct: 222  SVAEERFLSELQK------------REIADFYWDYASPKVTDPDNKASYFVE---RNLRR 266

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
                L ++  ++K     SN        +S    P  T                      
Sbjct: 267  FPSQLQVESGELKVESEDSNAKP-----LSTFISPLST--------------------PK 301

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKS------ALITADRNLARRVKLELTRFGIN 412
            V +I   +   +A  +   L     E++  +      A+I  D +L   V   +      
Sbjct: 302  VEVIGIPSGIGQAKQVHSILSELCREDEMSAEEALRTAVILPDEHLLIPVLNAIPEQIKR 361

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFK--------LNDFMAIATLVKHPLAKFGFPEKYL 464
            I+++ G PL+ T  +S++  +L             +  F  +  ++ H       PE   
Sbjct: 362  INVTMGYPLAGTPVASLMEYILALQKNIRYVDRRPVFYFRDVLPILNHRYISTTSPE--- 418

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                + L       NK      DL    L                  +            
Sbjct: 419  --VVSDLVKDISENNKIYISYDDLDKTSL----------------LSILFTPVTAVETFS 460

Query: 525  DHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
            D+++  +  L    ++ K       S ++      + L  +   E   + +        T
Sbjct: 461  DYLINVLQELNKAVESGKLKVESEDSNAEPLSTFNSQLSTINDIEQEFIFHY-----FAT 515

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            ++ +   + E    +K +   +  ++ R+ D  T+    E  S L I+G LE+R L+FD 
Sbjct: 516  VNRMKEVMREANVEMKID--TYFRLLKRVTDTITIPFHGEPLSGLQIMGVLETRALDFDR 573

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRS 702
            LI+  +NEG++P   A N F+   ++    L T E      A+ F        H+     
Sbjct: 574  LIILSMNEGIFPLRKAANSFIPYNLRRGFGLPTYEHQDSVWAYHFYRLIYRASHVSLLYD 633

Query: 703  LRENNIPT-IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
             R N + T   SR++ +L         + L                 T++      +   
Sbjct: 634  TRSNGLQTGEVSRFVHQLHYHYEEPIQNKLVVYNVSSSKTPALQVAKTEEV---MNRLVA 690

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI- 820
                  R  S S +   ++ P   Y   +  +       +  +    G++ H ++ EL  
Sbjct: 691  FRSGGTRAISASAVNTYLDCPLKFYFSVVEGIREEEEVSETIESNVFGSILHKVMEELYQ 750

Query: 821  ------------KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR--HLFHKISHS 866
                        K            + +   +  F+ + + P     +    +  K    
Sbjct: 751  PFCGKMVTADLLKAIRKDTPMLTGAIARAFAEIFFKTDIVRPLTGQNFLIGEMIRKYVEK 810

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIG---IHLTGFADRIDLLKSGFVDITDYKTGDN 923
             LE + K+      I      K          I L GF DRID ++   V I DYK+G  
Sbjct: 811  VLERDAKLTP-FRYIESEKQIKCLFPLTDKSNIQLKGFIDRIDEVRD-TVRIIDYKSGSG 868

Query: 924  PKK-ETAQKLIDP----------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
              +  + + L D           Q+ + A         Q+       ++Y+R       D
Sbjct: 869  TTQFTSVEALFDKEDTDRSKAVMQVFMYAWMY---GTVQLSTAIQPGIYYMRTLFSPSFD 925

Query: 973  CIT-------NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
                        ++             +L   +  + + E PF+     + K+ +   + 
Sbjct: 926  PGIYRRTDRFKTEQVLDFANYHADFENSLRNCLDEIFDTETPFV--QTPNGKACVYCPFK 983

Query: 1026 HLA 1028
             + 
Sbjct: 984  DIC 986


>gi|301310143|ref|ZP_07216082.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|300831717|gb|EFK62348.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 959

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 141/1056 (13%), Positives = 293/1056 (27%), Gaps = 191/1056 (18%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            + +    P +R     +    E+        P I ++ D+  +          ++     
Sbjct: 21   SRLAFVFPNRRTGLFFQKYLSEVADT-PLFSPTILTINDLFIQLSGKQSADRISM----- 74

Query: 105  NIQRLLELARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                L  L  + I    +         + E  L+        +  A+ L   +  +   E
Sbjct: 75   ----LFILYDIYIRQSGSTETFDEFLYWGEMLLNDFDDIDKYMANARMLFSNVTDLREIE 130

Query: 164  KKWEDLHALKNEKYGMWWL---------LAADFLK------IASKYWTERLVELNASSPV 208
              ++ L   +      +W              FL          + +   L         
Sbjct: 131  NDFDFLSDEQIAAIRSFWSSFYPRGDTPNQQQFLAVWQVLYDLYEEFRATLAAEGKGYEG 190

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                 ++ +                                             D     
Sbjct: 191  MIFREVVESMERGES--------------------------------------PDLPYEQ 212

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             ++  +   S +                 + L  L  +         VS+++       S
Sbjct: 213  IVFVGLNALSVSEE---------------RFLAQLQKREIADFYWDYVSDKVTDPDNKAS 257

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL------RMSL 382
                    S          K+P  +K  +++ +I   +   +A  +   L          
Sbjct: 258  YFVSRNLKS-----FPSSMKLPPEEKVKTEIEVIGIPSGIGQAKHVYTLLSDWCKEAEMS 312

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK--- 439
             E   ++A+I  D +L   V   +      I+++ G PL+ T  +S++  +L        
Sbjct: 313  SEEALRTAVILPDEHLLIPVLNAIPEQIRRINVTMGYPLAGTPVASLIEYILALQKNVRY 372

Query: 440  -----LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                 L  F  +  ++ H       PE       ++L       NK      +L+     
Sbjct: 373  IDRNPLFYFRDVLPVLNHRYILSTSPEI-----ISSLVKEITENNKIYISHTELEKT--- 424

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                             +            D++++ +  L                S  +
Sbjct: 425  -------------PLLEILFTPVTGVEAFSDYLIKVLEELNKVM------------SALS 459

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                        D  ++    +F    +    +    IE           +  ++ R+ D
Sbjct: 460  DEEEEDAPQRTNDLEQEFIFHYFTTVNRMKEVMKDARIE------MKIDTFFRLLKRVTD 513

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              T+    E  S L I+G LE+R L+FD LI+  +NEG++P+  A N F+   ++    L
Sbjct: 514  TITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAANSFIPYNLRRGFGL 573

Query: 675  KTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLK 732
             T E      A+ F        H+      R N + T   SR++ +L           + 
Sbjct: 574  PTYEHQDSVWAYHFYRLIERASHVSLLYDTRSNGLQTGEVSRFVHQLHYH------YEVP 627

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP---RTYSFSEIKQLINDPYAVYARR 789
             R +  +               +          +    +  S S I   ++ P   Y   
Sbjct: 628  MRDKLVVYNVSSSKTPPLAVPKREDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSV 687

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------------KKRINKNTPEINHLMK 836
            +  +       +  +    G++ H ++ EL              K            + +
Sbjct: 688  VEGIREEEEVSETIESDVFGSILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIAR 747

Query: 837  QIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--- 891
                  F+ E +       +    +  K     LE + K+      I         I   
Sbjct: 748  AFASEFFKTEVVRSLTGQNYLIGEMIRKYVEKILERDGKLTP-FVYIESERKINGLISLS 806

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP----------QLSLE 940
            +   I L GF DR+D +    + I DYK+G       + + L +           Q+ + 
Sbjct: 807  DHSEIRLKGFIDRVDEVLD-AIRIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMY 865

Query: 941  AAALKAGSFSQIDCRKV-ANLFYIR-LKQKFKIDCI------TNDKKKYSADELSEKSLK 992
                    F++   + +   ++Y+R L        +         +K       ++   +
Sbjct: 866  CWMYAH--FTENKGKTIQPGIYYVRSLFSDPFDPSVYHRIERGKSEKVEDFSGYAQAFEE 923

Query: 993  NLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             L   +  + N E PF      + K+     +  + 
Sbjct: 924  GLRGCLDEIFNPEIPFT--QTPTGKACSYCPFKGIC 957


>gi|325675755|ref|ZP_08155439.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707]
 gi|325553726|gb|EGD23404.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707]
          Length = 1094

 Score =  235 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 125/1062 (11%), Positives = 277/1062 (26%), Gaps = 122/1062 (11%)

Query: 30   LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT------------GKKSTILPI 77
            LV+      +      SV +   ++RA   +R +  E                ++T  P+
Sbjct: 53   LVDAAVARIVAGEDPESVLVLTQSRRAATAIREQITERLLAAEHDPESPGVQPRATREPL 112

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            ++++                N  P      RL+  A    + R  L   I D     P  
Sbjct: 113  VRTVHSYAFAVLRLQAAAHGNPPP------RLITGAEQDAVLRELLRGDIADGGGMWPER 166

Query: 138  LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
            L  +       A  L +++          EDL  L        W+ A  F    + ++ +
Sbjct: 167  LRPALGMT-GFAVELRNLMLRANERGLGPEDLIDLGYAHDKAEWVAAGRF----AAHYEQ 221

Query: 198  RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
             ++   A          M A            +I A  T        L    A   +  +
Sbjct: 222  GMLLRGAVG--------MEAPEATAPALDAAELISAALTAFATDRDLLRRERARVRHLLV 273

Query: 258  VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
                        +   I   + +   +         +  A       +          + 
Sbjct: 274  DDAQHLDPQAAQLVRLIGTGTASTAIAGDPDQAIFAFRGADPRFLTGLADRGDPAQVILD 333

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
                    V   +                              +       +EA  +A  
Sbjct: 334  TNFRAAPAVARVAGRIAGLLPGNPPHRGAAVPVTEDDTDGRAVVRVLSTPAKEAALVADT 393

Query: 378  LRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTS 432
            LR +   +     + + +  +   +   ++  L   G+ +  +A   PL+     + L S
Sbjct: 394  LRRAHLIDGVPWSEMAIVARSVPRVLPPLRRALLSAGVPVTTAASELPLAKQHGVAGLLS 453

Query: 433  LLNAIFKL-NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            ++ A+            L+  P+           R       +A  G++      D   L
Sbjct: 454  VMRALVGGEFTGEDAIALLSGPIGGAEPVSLRRLRRGLRRVELASGGDR------DSAEL 507

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            +   +    +   V H    L++ +      ++  + +   PL   +  +         +
Sbjct: 508  LRALLVDGPDADGVAHLLPGLTDVESLSLRRVLKVLRRARVPLQRGRGIEEVLWAAWQAT 567

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
               +              +   +L         ++ +   +               ++ +
Sbjct: 568  GLERRWAAASAFGGPIGAQADRDLDAVVALFDAAANYVDRLPRAQLSGFVDY----LVEQ 623

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
             I G      +    T+ +L    +    +  +++ G+ EG+WP   A+   L      +
Sbjct: 624  AIPGPAPMRAVASQETVTVLSAHSAAGRQWRVVVVLGVQEGLWPSLGARGTLLGTEELIE 683

Query: 672  L--NLKTAEKYIGQAA--------HDFEMANGTRHLIYTRSL--RENNIPTIASRWLQRL 719
            +   L   +K + + A              +  R  +   ++     +   + SR++  L
Sbjct: 684  ITSGLGEVDKTLSRTAPLLAEERRLFLVACSRARDSLLVTAVDSSSGDTELVRSRFVDDL 743

Query: 720  LVLGGT------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR----- 768
            L               +   R         +L      P      P     A  +     
Sbjct: 744  LRGADDLDVDEVAPVTDDTPRVLALPALVAELRSVVCDPDVAVADPERQQRAAHQLARLA 803

Query: 769  --------------------------------TYSFSEIKQLINDPYAVYARRILKLDFI 796
                                              S S I+ + N P      R       
Sbjct: 804  EAGVRGAHPDQWYGTSAPSSDVGLWDPEDGPVPLSPSTIELIANCPLRWMLERHGG---- 859

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
                 D      GTL H     L++       P+      +      +  +       + 
Sbjct: 860  --SDGDNTHAIAGTLVH----TLVQALAGHIPPDQVDHALETAWDSVDLGSEWFSRRELE 913

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-----GIHLTGFADRIDLLKSG 911
            R     +  +F +     +S + +I V +     +E        + + G  DR++    G
Sbjct: 914  RTR--GMLDNFADWLRGTRSELTEIGVEVAVDGVLEPRTEGEATVRIRGRIDRLERDSDG 971

Query: 912  FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
               + D KT      +   +    QL+    A   G    +   +      + + +  K 
Sbjct: 972  RPVVIDVKTAKAAVTKEQAEQHA-QLAAYQVAAARGLIDGVPASQPGGARLVFVAKPHKK 1030

Query: 972  DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
            +  T   +    D+        + +     +     F++ + 
Sbjct: 1031 EGSTQRIQSALDDDGVALWENVIHDAAAATRGPT--FLARIN 1070


>gi|256840087|ref|ZP_05545596.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739017|gb|EEU52342.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 959

 Score =  235 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 139/1055 (13%), Positives = 295/1055 (27%), Gaps = 189/1055 (17%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            + +    P +R     +    E+        P I ++ D+  +          ++     
Sbjct: 21   SRLAFVFPNRRTGLFFQKYLSEVADI-PLFSPTILTINDLFIQLSGKQSADRISM----- 74

Query: 105  NIQRLLELARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                L  L  + I    +         + E  L+        +  A+ L   +  +   E
Sbjct: 75   ----LFTLYDIYIRQSGSTETFDEFLYWGEMLLNDFDDIDKYMANARMLFSNVTDLREIE 130

Query: 164  KKWEDLHALKNEKYGMWWL---------LAADFLK------IASKYWTERLVELNASSPV 208
              ++ L   +      +W              FL          + +   L         
Sbjct: 131  NDFDFLSDEQIAAIRSFWSSFYPRGDTPNQQQFLAVWQVLYDLYEEFRATLAAEGKGYEG 190

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                 ++ +                                             D     
Sbjct: 191  MIFREVVESMERGES--------------------------------------PDLPYEQ 212

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             ++  +   S +                 + L  L  +         VS+++       S
Sbjct: 213  IVFVGLNALSVSEE---------------RFLAQLQKREIADFYWDYVSDKVTDPDNKAS 257

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL------RMSL 382
                    S          K+P  +K  +++ +I   +   +A  +   L          
Sbjct: 258  YFVSRNLKS-----FPSSMKLPPEEKVKTEIEVIGIPSGIGQAKHVYTLLSDWCKEAEMS 312

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK--- 439
             E   ++A+I  D +L   V   +      I+++ G PL+ T  +S++  +L        
Sbjct: 313  SEEALRTAVILPDEHLLIPVLNAIPEQIRRINVTMGYPLAGTPVASLIEYILALQKNVRY 372

Query: 440  -----LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                 L  F  +  ++ H       PE       ++L       NK      +L      
Sbjct: 373  IDRNPLFYFRDVLPVLNHRYILSTSPEI-----ISSLVKEITENNKIYISHTELGKT--- 424

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                             +            D++++ +  L                S  +
Sbjct: 425  -------------PLLEILFTPVTGVEAFSDYLIKVLEELNKVM------------SALS 459

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                        D  ++    +      T++ +   + +    +K +   +  ++ R+ D
Sbjct: 460  DEEEEDAPQRTNDLEQEFIFHY----FTTVNRMREVMRDACVEMKID--TFFRLLKRVTD 513

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              T+    E  S L I+G LE+R L+FD LI+  +NEG++P+  A N F+   ++    L
Sbjct: 514  TITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAANSFIPYNLRRGFGL 573

Query: 675  KTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLK 732
             T E      A+ F        H+      R N + T   SR++ +L           + 
Sbjct: 574  PTYEHQDSVWAYHFYRLIERASHVSLLYDTRSNGLQTGEVSRFVHQLHYH------YEVP 627

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP---RTYSFSEIKQLINDPYAVYARR 789
             R +  +               +          +    +  S S I   ++ P   Y   
Sbjct: 628  MRDKLVVYNVSSSKTPPLAVPKREDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSV 687

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------------KKRINKNTPEINHLMK 836
            +  +       +  +    G++ H ++ EL              K            + +
Sbjct: 688  VEGIREEEEVSETIESDVFGSILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIAR 747

Query: 837  QIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--- 891
                  F+ E +       +    +  K     LE + K+      I         I   
Sbjct: 748  AFASEFFKTEVVRSLTGQNYLIGEMIRKYVEKILERDGKLTP-FVYIESERKINGLISLS 806

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP----------QLSLE 940
            +   I L GF DR+D +    + I DYK+G       + + L +           Q+ + 
Sbjct: 807  DHSEIRLKGFIDRVDEVLD-AIRIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMY 865

Query: 941  AAALKAGSFSQIDCRKVANLFYIR-LKQKFKIDCI------TNDKKKYSADELSEKSLKN 993
                   + ++    +   ++Y+R L        +         +K       ++   + 
Sbjct: 866  CWMYAHLTENKGKTIQP-GIYYVRSLFADPFDPSVYHRIERGKSEKVEDFSGYAQAFEEG 924

Query: 994  LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            L   +  + N E PF      + K+     +  + 
Sbjct: 925  LRGCLDEIFNPEIPFT--QTPTGKACSYCPFKGIC 957


>gi|312140618|ref|YP_004007954.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311889957|emb|CBH49274.1| putative UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi
            103S]
          Length = 1105

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 126/1062 (11%), Positives = 277/1062 (26%), Gaps = 122/1062 (11%)

Query: 30   LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT------------GKKSTILPI 77
            LV+      +      SV +   ++RA   +R +  E                ++T  P+
Sbjct: 64   LVDAAVARIVAGEDPESVLVLTQSRRAATAIREQITERLLAAEHDPESPGVQPRATREPL 123

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            ++++                N  P      RL+  A    + R  L   I D     P  
Sbjct: 124  VRTVHSYAFAVLRLQAAAHGNPPP------RLITGAEQDAVLRELLRGDIADGGGMWPER 177

Query: 138  LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
            L  +       A  L +++          EDL  L        W+ A  F    + ++ +
Sbjct: 178  LRPALGMT-GFAVELRNLMLRANERGLGPEDLIDLGYAHDKAEWVAAGRF----AAHYEQ 232

Query: 198  RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
             ++   A          M A            +I A  T        L    A   +  +
Sbjct: 233  GMLLRGAVG--------MEAPEATAPALDAAELISAALTAFATDRDLLRRERARVRHLLV 284

Query: 258  VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
                        +   I   + +   +         +  A       +          + 
Sbjct: 285  DDAQHLDPQAAQLVRLIGTGTASTAIAGDPDQAIFAFRGADPRFLTGLADRGDPAQVILD 344

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
                    V   +                              +       +EA  +A  
Sbjct: 345  TNFRAAPAVARVAGRIAGLLPGNPPHRGAAVPVTEDDTDGRAVVRVLSTPAKEAALVADT 404

Query: 378  LRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTS 432
            LR +   +     + + +  +   +   ++  L   G+ +  +A   PL+     + L S
Sbjct: 405  LRRAHLIDGVPWSEMAIVARSVPRVLPPLRRALLSAGVPVTTAASELPLAKQHGVAGLLS 464

Query: 433  LLNAIFKL-NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            ++ A+            L+  P+           R       +A  G++      D   L
Sbjct: 465  VMRALVGGEFTGEDAIALLSGPIGGAEPVSLRRLRRGLRRVELASGGDR------DSAEL 518

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            +   I    +   V H    L++ +      ++  + +   PL   +  +         +
Sbjct: 519  LRALIVDGPDADGVAHLLPGLTDVESLSLRRVLKVLRRARVPLQRGRGIEEVLWAAWQAT 578

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
               +              +   +L         ++ +   +               ++ +
Sbjct: 579  GLERRWAAASAFGGPIGAQADRDLDAVVALFDAAANYVDRLPRAQLSGFVDY----LVEQ 634

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
             I G      +    T+ +L    +    +  +++ G+ EG+WP   A+   L      +
Sbjct: 635  AIPGPAPMRAVASQETVTVLSAHSAAGRQWRVVVVLGVQEGLWPSLGARGTLLGTEELIE 694

Query: 672  L--NLKTAEKYIGQAA--------HDFEMANGTRHLIYTRSL--RENNIPTIASRWLQRL 719
            +   L   +K + + A              +  R  +   ++     +   + SR++  L
Sbjct: 695  ITSGLGEVDKTLSRTAPLLAEERRLFLVACSRARDSLLVTAVDSSSGDTELVRSRFVDDL 754

Query: 720  LVLGGT------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR----- 768
            L               +   R         +L      P      P     A  +     
Sbjct: 755  LRGADDLDVDEVAPVTDDTPRVLALPALVAELRSVVCDPDVAVADPERQQRAAHQLARLA 814

Query: 769  --------------------------------TYSFSEIKQLINDPYAVYARRILKLDFI 796
                                              S S I+ + N P      R       
Sbjct: 815  EAGVRGAHPDQWYGTSAPSSDVGLWDPEDGPVPLSPSTIELIANCPLRWMLERHGG---- 870

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
                 D      GTL H     L++       P+      +      +  +       + 
Sbjct: 871  --SDGDNTHAIAGTLVH----TLVQALAGHIPPDQVDHALETAWDSVDLGSEWFSRRELE 924

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-----GIHLTGFADRIDLLKSG 911
            R     +  +F +     +S + +I V +     +E        + + G  DR++    G
Sbjct: 925  RTR--GMLDNFADWLRGTRSELTEIGVEVAVDGVLEPRTEGEATVRIRGRIDRLERDSDG 982

Query: 912  FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
               + D KT      +   +    QL+    A   G    +   +      + + +  K 
Sbjct: 983  RPVVIDVKTAKAAVTKEQAEQHA-QLAAYQVAAARGLIDGVPASQPGGARLVFVAKPHKK 1041

Query: 972  DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
            +  T   +    D+        + +     +     F++ + 
Sbjct: 1042 EGSTQRIQSALDDDGVALWENVIHDAAAATRGPT--FLARIN 1081


>gi|314923609|gb|EFS87440.1| UvrD/REP helicase [Propionibacterium acnes HL001PA1]
          Length = 1061

 Score =  234 bits (597), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 118/1003 (11%), Positives = 259/1003 (25%), Gaps = 106/1003 (10%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 49  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMAARLRQE 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A S    +IAL R   +  
Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAESVHRARIALTRPGTDVE 210

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSS 308

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 309 RLRRRANHSTSTDAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368

Query: 400 RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAI-----FKLNDFMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L                +ATL+ +P
Sbjct: 369 DVIATILAAEGIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQLSSRDVATLLSNP 428

Query: 454 LAKFGFPEKYLSRAKNAL-------ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
           LA       +       L         +      +       KS   D  +  ++ +   
Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSEDASTAE 488

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              +            L   +      +        S               +   ++  
Sbjct: 489 LDTACEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWASSLRR 548

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                      + +G       ++  +T + I         +    I  +  +   E   
Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGITGGQRLIEVVRQEQIPADRARESDEDRD 608

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT----AEKYIG 682
            + ++     +   FD + + GL EG WP        +     S   L      +E    
Sbjct: 609 GVSVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVATPGWSENLRA 668

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQRLLVLGG 724
           +        +  RH + + S+         S                    L  L+    
Sbjct: 669 ETRLLLVACSRARHQLLSCSVDSAEEGKRPSGLVAGLPHIEDNADSLNFTSLTELVGELR 728

Query: 725 TDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               D  +  G                    R +        +++  P     A     S
Sbjct: 729 QVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEIELS 788

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            S + +L+  P   +  R          +        G+L H I     +     + PE 
Sbjct: 789 ASHVGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AENMDQWSLPEA 840

Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
              ++         E                    F    +     +    V +   + +
Sbjct: 841 LAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVRVDGTITV 897

Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
            S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A + +G    
Sbjct: 898 PSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVVASGGVEI 956

Query: 952 IDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSL 991
           I    V+    + L+    K + +   + +         +++ 
Sbjct: 957 IGPASVSGAELVHLRIGAGKGQANPKIDYQSGLVDVPWPDEAE 999


>gi|313822552|gb|EFS60266.1| UvrD/REP helicase [Propionibacterium acnes HL036PA2]
          Length = 1061

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 49  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +G    I    V+    + L+    I          S
Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987


>gi|314989616|gb|EFT33707.1| UvrD/REP helicase [Propionibacterium acnes HL005PA3]
 gi|315084653|gb|EFT56629.1| UvrD/REP helicase [Propionibacterium acnes HL027PA2]
 gi|328754849|gb|EGF68465.1| UvrD/REP helicase [Propionibacterium acnes HL020PA1]
          Length = 1061

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 49  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +G    I    V+    + L+    I          S
Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987


>gi|327327124|gb|EGE68903.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL096PA3]
          Length = 1061

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 49  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +G    I    V+    + L+    I          S
Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987


>gi|160888167|ref|ZP_02069170.1| hypothetical protein BACUNI_00575 [Bacteroides uniformis ATCC 8492]
 gi|156862302|gb|EDO55733.1| hypothetical protein BACUNI_00575 [Bacteroides uniformis ATCC 8492]
          Length = 773

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 107/733 (14%), Positives = 230/733 (31%), Gaps = 107/733 (14%)

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL 406
            ++ +   +V  I A  E  +A  +   +R + +       K +A++  + +L   V   +
Sbjct: 91   DVLRKPKNVRFISASTENAQARYLPQWIRGNEELRTPSSFKDTAVVLCNESLLLPVLHSI 150

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND-------FMAIATLVKHPLAKFGF 459
                 N++I+ G PL+ T   S + +L+               +  + TL+KHP  +   
Sbjct: 151  PAEVKNVNITMGFPLAQTPVYSFINALVELQTTGYHAGTGRYIYETVITLLKHPYTRQLS 210

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
            P           E    R N+      +LK                           +  
Sbjct: 211  PNAETL------EKQLTRDNRFYPLPSELKQ----------------DAFLEQVFTPQNG 248

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
               L  ++ + +  +      +                                      
Sbjct: 249  IAALCSYLTELLREVAVLYRQEKDVEDIF----------------------NQLYRESLF 286

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
            +  TL +    +IETG            ++ RL+    +    E +  + ++G LE+R L
Sbjct: 287  KSYTLVNRLLSLIETGELSSVRTDTLKRLLNRLLTSANIPFHGEPAIGMQVMGVLETRNL 346

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLI 698
            +F  LI+  LNEG  PK    + F+   ++    + T E      A+ F        ++ 
Sbjct: 347  DFRNLIMLSLNEGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENVT 406

Query: 699  YTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
               ++  +       SR++ +  V    +      + GQ          + T +   +  
Sbjct: 407  LLYNISSDGLNRGEMSRFMLQFQVESPHNISLEYLEAGQSPQQAREIEIHKTPEMLQQMF 466

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
              +   +     +S S +   ++     Y R +  L        + D T  GT+FH    
Sbjct: 467  DAYNIHQRPKAFFSPSALNAYLDCRLKFYYRYVAGLKAPDEVSAEIDSTLFGTIFHRSAE 526

Query: 818  ELI-------KKRINKNTPEINH---LMKQIIDSHFEKENLPP---------HIDIIWRH 858
             +        ++    +  ++      ++  +D+ F+++                +I   
Sbjct: 527  LVYNELTANGREIRKDDLEQLLKDDVRLQAYVDNAFKEKFFHVPLTEQPEYNGTQLIHSK 586

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAK--MAIES----IGIHLTGFADRIDLLKSGF 912
            +        L ++ +  +      +    +  M I++    + + + G  DR+D      
Sbjct: 587  VIASYLRQLLRNDLQ-YAPFRMEGMEQDVREMMEIDTPQGKLALQIGGTIDRLDSKGD-T 644

Query: 913  VDITDYKTGDNP-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFY 962
            + I DYKTG  P   E  ++L  P         Q  L AA L      ++      +L Y
Sbjct: 645  LRIVDYKTGGTPKTPENIEQLFTPADNRPNYIFQTFLYAAILCRKQSLKVAP----SLLY 700

Query: 963  IRLKQKFKIDCITN-------DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015
            I          +              +     ++  + L  ++  + + E+ F       
Sbjct: 701  IHRAASESYSPVIEMGAPRQPKVPVNNFAFFEDEFRERLHGLLQEIFSQEETF--SQTED 758

Query: 1016 EKSNIQSEYDHLA 1028
             +     ++  L 
Sbjct: 759  TRKCEYCDFRSLC 771


>gi|313812633|gb|EFS50347.1| UvrD/REP helicase [Propionibacterium acnes HL025PA1]
          Length = 1061

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 123/1010 (12%), Positives = 263/1010 (26%), Gaps = 120/1010 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 49  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949

Query: 945 KAGSFSQIDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSL 991
            +G    I    V+    + L+    K + +   + +         +++ 
Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGKGQANPKVDYQSGLVDVPWPDEAE 999


>gi|50842800|ref|YP_056027.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           KPA171202]
 gi|50840402|gb|AAT83069.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           KPA171202]
 gi|315105904|gb|EFT77880.1| UvrD/REP helicase [Propionibacterium acnes HL030PA1]
          Length = 1061

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 123/998 (12%), Positives = 255/998 (25%), Gaps = 117/998 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 49  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMAARLRQE 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A S    +IAL R   +  
Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAESVHRARIALTRPGTDVE 210

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSS 308

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 309 RLRRRANHSTSTDAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368

Query: 400 RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAI-----FKLNDFMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L                +ATL+ +P
Sbjct: 369 DVIATILAAEGIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQLSSRDVATLLSNP 428

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSEDASTAE 488

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +G    I    V+    + L+    I          S
Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987


>gi|314966447|gb|EFT10546.1| UvrD/REP helicase [Propionibacterium acnes HL082PA2]
 gi|315103756|gb|EFT75732.1| UvrD/REP helicase [Propionibacterium acnes HL050PA2]
 gi|327327269|gb|EGE69045.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL103PA1]
          Length = 1061

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 119/1003 (11%), Positives = 258/1003 (25%), Gaps = 106/1003 (10%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 49  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMAARLRQE 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A S    +IAL R   +  
Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAESVHRARIALTRPGTDVE 210

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSS 308

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 309 RLRRRANHSTSTDAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368

Query: 400 RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAI-----FKLNDFMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L                +ATL+ +P
Sbjct: 369 DVIATILAAEGIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQLSSRDVATLLSNP 428

Query: 454 LAKFGFPEKYLSRAKNAL-------ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
           LA       +       L         +      +       KS   D  +  ++ +   
Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSEDASTAE 488

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              +            L   +      +        S               +   ++  
Sbjct: 489 LDTACEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWASSLRR 548

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                      + +G       ++  +T + I         +    I  +  +   E   
Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGITGGQRLIEVVRQEQIPADRARESDEDRD 608

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA----EKYIG 682
            + ++     +   FD + + GL EG WP        +     S   L  A    E    
Sbjct: 609 GVSVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWSENLRA 668

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQRLLVLGG 724
           +        +  RH +   S+         S                    L  L+    
Sbjct: 669 ETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLPHIEDNADSLNFTSLTELVGELR 728

Query: 725 TDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               D  +  G                    R +        +++  P     A     S
Sbjct: 729 QVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEIELS 788

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            S + +L+  P   +  R          +        G+L H I     +     + PE 
Sbjct: 789 ASHVGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AENMDQWSLPEA 840

Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
              ++         E                    F    +     +    V +   + +
Sbjct: 841 LAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVRVDGTITV 897

Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
            S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A + +G    
Sbjct: 898 PSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVVASGGVEV 956

Query: 952 IDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSL 991
           I    V+    + L+    K + +   + +         +++ 
Sbjct: 957 IGPASVSGAELVHLRIGAGKGQANPKIDYQSGLVDVPWPDEAE 999


>gi|313792360|gb|EFS40459.1| UvrD/REP helicase [Propionibacterium acnes HL110PA1]
 gi|313816226|gb|EFS53940.1| UvrD/REP helicase [Propionibacterium acnes HL059PA1]
 gi|313832979|gb|EFS70693.1| UvrD/REP helicase [Propionibacterium acnes HL056PA1]
 gi|314960466|gb|EFT04568.1| UvrD/REP helicase [Propionibacterium acnes HL002PA2]
 gi|314962479|gb|EFT06579.1| UvrD/REP helicase [Propionibacterium acnes HL082PA1]
 gi|314972836|gb|EFT16933.1| UvrD/REP helicase [Propionibacterium acnes HL053PA1]
 gi|314983660|gb|EFT27752.1| UvrD/REP helicase [Propionibacterium acnes HL005PA1]
 gi|315085338|gb|EFT57314.1| UvrD/REP helicase [Propionibacterium acnes HL002PA3]
 gi|315109403|gb|EFT81379.1| UvrD/REP helicase [Propionibacterium acnes HL030PA2]
 gi|327329832|gb|EGE71587.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL096PA2]
 gi|327443714|gb|EGE90368.1| UvrD/REP helicase [Propionibacterium acnes HL043PA2]
 gi|327443749|gb|EGE90403.1| UvrD/REP helicase [Propionibacterium acnes HL013PA2]
 gi|332675732|gb|AEE72548.1| putative helicase [Propionibacterium acnes 266]
          Length = 1061

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 49  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +G    I    V+    + L+    I          S
Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987


>gi|255013470|ref|ZP_05285596.1| hypothetical protein B2_06150 [Bacteroides sp. 2_1_7]
          Length = 959

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 140/1055 (13%), Positives = 292/1055 (27%), Gaps = 189/1055 (17%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            + +    P +R     +    E+        P I ++ D+  +          ++     
Sbjct: 21   SRLAFVFPNRRTGLFFQKYLSEVADI-PLFSPTILTINDLFIQLSGKQSADRISM----- 74

Query: 105  NIQRLLELARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                L  L  + I    +         + E  L+        +  A+ L   +  +   E
Sbjct: 75   ----LFTLYDIYIRQSGSTETFDEFLYWGEMLLNDFDDIDKYMANARMLFSNVTDLREIE 130

Query: 164  KKWEDLHALKNEKYGMWWL---------LAADFLK------IASKYWTERLVELNASSPV 208
              ++ L   +      +W              FL          + +   L         
Sbjct: 131  NDFDFLSDEQIAAIRSFWSSFYPRGDTPNQQQFLAVWQVLYDLYEEFRATLAAEGKGYEG 190

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                 ++ +                                             D     
Sbjct: 191  MIFREVVESMERGES--------------------------------------PDLPYER 212

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             ++  +   S +                 + L  L  +         VS+++       S
Sbjct: 213  IVFVGLNALSVSEE---------------RFLAQLQKREIADFYWDYVSDKVTDPDNKAS 257

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL------RMSL 382
                    S          K+P  +K  +++ +I   +   +A  +   L          
Sbjct: 258  YFVSRNLKS-----FPSSMKLPPEEKIKTEIEVIGIPSGIGQAKHVYTLLSDWCKEAEMS 312

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK--- 439
             E   ++A+I  D +L   V   +      I+++ G PL+ T  +S++  +L        
Sbjct: 313  SEEALRTAVILPDEHLLIPVLNAIPEQIRRINVTMGYPLAGTPVASLIEYILALQKNVRY 372

Query: 440  -----LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                 L  F  +  ++ H       PE       ++L       NK      +L      
Sbjct: 373  IDRNPLFYFRDVLPVLNHRYILSTSPEI-----ISSLVKEITENNKIYISHTELGKT--- 424

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                             +            D++++ +  L                S  +
Sbjct: 425  -------------PLLEILFTPVTGVEAFSDYLIKVLEELNKVM------------SALS 459

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                        D  ++    +F    +    +    IE           +  ++ R+ D
Sbjct: 460  DEEEEDAPQRTNDLEQEFIFHYFTTVNRMKEVMKDARIE------MKIDTFFRLLKRVTD 513

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              T+    E  S L I+G LE+R L+FD LI+  +NEG++P+  A N F+   ++    L
Sbjct: 514  TITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAANSFIPYNLRRGFGL 573

Query: 675  KTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLK 732
             T E      A+ F        H+      R N + T   SR++ +L           + 
Sbjct: 574  PTYEHQDSVWAYHFYRLIERASHVSLLYDTRSNGLQTGEVSRFVHQLHYH------YEVP 627

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP---RTYSFSEIKQLINDPYAVYARR 789
             R +  +               +          +    +  S S I   ++ P   Y   
Sbjct: 628  MRDKLVVYNVSSSKTPPLAVPKREDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSV 687

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------------KKRINKNTPEINHLMK 836
            +  +       +  +    G++ H ++ EL              K            + +
Sbjct: 688  VEGIREEEEVSETIESDVFGSILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIAR 747

Query: 837  QIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--- 891
                  F+ E +       +    +  K     LE + K+      I         I   
Sbjct: 748  AFASEFFKTEVVRSLTGQNYLIGEMIRKYVEKILERDGKLTP-FVYIESERKINGLISLS 806

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP----------QLSLE 940
            +   I L GF DR+D ++   + I DYK+G       + + L +           Q+ + 
Sbjct: 807  DYSEIRLKGFIDRVDEVRD-AIRIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMY 865

Query: 941  AAALKAGSFSQIDCRKVANLFYIR-LKQKFKIDCI------TNDKKKYSADELSEKSLKN 993
                   + ++    +   ++Y+R L        +         +K       ++   + 
Sbjct: 866  CWMYAHLTENKGKTIQP-GIYYVRSLFADPFDPSVYHRIERGKSEKVEDFSGYAQAFEEG 924

Query: 994  LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            L   +  + N E PF      + K+     +  + 
Sbjct: 925  LRGCLDEIFNPEIPFT--QTPTGKACSYCPFKGIC 957


>gi|330995680|ref|ZP_08319578.1| hypothetical protein HMPREF9442_00643 [Paraprevotella xylaniphila YIT
            11841]
 gi|329574739|gb|EGG56300.1| hypothetical protein HMPREF9442_00643 [Paraprevotella xylaniphila YIT
            11841]
          Length = 937

 Score =  232 bits (591), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 147/1097 (13%), Positives = 288/1097 (26%), Gaps = 250/1097 (22%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F R +   L++                L  VT+  P KRA   +  +   ++  +    P
Sbjct: 4    FIRLIAQDLIHRFGTN-----------LRDVTVVFPNKRAGLFMNQQLAAVS-GRPVWAP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
              +++ ++ +                       L +  L  ++   +P+           
Sbjct: 52   RYRTISELFDTLSDFTRCDDI------------LSVCELHRVYAALVPN----------- 88

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDL-------HALKNEKYGMWWLLAA---- 185
              P S        + +    D I+        L         L +  +       A    
Sbjct: 89   --PESLDRFYGWGEIMLSDFDDIDKHLADPHKLFSNIQSIKELDHSDFLTPRQEEALKHF 146

Query: 186  --------------DFLK------IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
                           FL            +  RL E            +    AE   + 
Sbjct: 147  FEDFSIEGNSRLKEKFLALWNRMDDIYATFNARLKEKGMLYEGALYKDVAEHLAERADRI 206

Query: 226  TKG-PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                  +  G         RL S +      A+     D                    S
Sbjct: 207  PADMTYVFVGFNVLNDVEKRLFSYLQERGQ-ALFYWDYDVMYV-------------GEKS 252

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                 T  + +L +  + L+    D  +          R   I+ +        +     
Sbjct: 253  RFEAGTFIRQNLKEFPNALEETCFDNFK-------NPPRIEFIATTSENAQARYIPQWLD 305

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
                 P                                    + +A++  + +L + V  
Sbjct: 306  SALTKPE-----------------------------------QDTAIVLCNESLLQPVLH 330

Query: 405  ELTRFGINI-----DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
             L            +I+ G P++ T   S + +LL+      D        +        
Sbjct: 331  SLPDATSPHPVKRTNITMGFPMTDTPVYSFINALLSLQTDGYDRDRRCFRAEQEKIVHSH 390

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
            P   L       + +     +N   ++ ++SL+    A                      
Sbjct: 391  PYAPLL----EEQEIFCPHAENHALLVYIRSLLEGLAAAFGRQKDRKDDVYN-------- 438

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
              L  + + +    +  +         ++  S   +L  T L                  
Sbjct: 439  -QLYHEALYRAHQVVSRFIRLTEDRTLDVQPSTLRRLLRTVLGT---------------- 481

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                                                 T+    E +  L ++G LE+R L
Sbjct: 482  ------------------------------------TTIPFHGEPAVGLQVMGVLETRNL 505

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI- 698
            NF  +++  +NEG+ PK      F+   ++    L T +  I   A  F         I 
Sbjct: 506  NFRHILMLSVNEGMLPKAVNDTSFIPYHLREVFGLTTIQHKIAVYAFYFYRLVQHTERIT 565

Query: 699  -YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
                   +       SR+L++LL          + + GQ            T +      
Sbjct: 566  FMYNIATDGLNKNEMSRFLRQLLAETDFPVELKILQSGQAVPADNGMEAAKTPEVMDILR 625

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
            + +   +   R  S S +   I+ P   Y +++ ++      +   D    GT+FH    
Sbjct: 626  RNYGSGQPGSRPLSPSALNAYIDCPLKFYYQQVARIRTPKDPQNGLDNALFGTIFHEAAE 685

Query: 818  ELIKKRINKNTPEINHLMKQIID-------------------SHFEKENLPPHIDIIWRH 858
             + +K   +N       ++++++                      E         ++ R 
Sbjct: 686  LVYQKLAERNPVIRRQDIERLLEGGETALLPYIEASFLKNFFEGREDTVFYNGQLLVARK 745

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------SIGIHLTGFADRID--LLKS 910
            +        L   +          +      +++       + I + G  DR+D   +  
Sbjct: 746  VMASYLRQLL-FHDSRMEQFVLEEMEQEHHRSVDIISDGHPLSIDIGGKIDRMDTVRMPD 804

Query: 911  -------GFVDITDYKTGDNPKKE-TAQKLIDP---------QLSLEAAALKAGSFSQID 953
                     + I DYKTG  P+K  + ++LI P         Q+ L A  +      Q  
Sbjct: 805  ETTGQKVETLRIVDYKTGGTPEKAISMEQLIQPAEHRPSYIFQIFLYAWVMTG---EQKC 861

Query: 954  CRKVANLFYIRLKQKFKIDC--ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
                A LF++        D   + N ++        E+  K L  ++  L N E PF   
Sbjct: 862  PVSPA-LFFVHKSNAEDYDPTIVFNRERVTDFSRFKEEFQKMLQGVLEELFNPEIPF--R 918

Query: 1012 LRLSEKSNIQSEYDHLA 1028
                 K     +Y  L 
Sbjct: 919  QTSVPKICAYCDYKLLC 935


>gi|313820643|gb|EFS58357.1| UvrD/REP helicase [Propionibacterium acnes HL036PA1]
 gi|314924886|gb|EFS88717.1| UvrD/REP helicase [Propionibacterium acnes HL036PA3]
          Length = 1058

 Score =  232 bits (591), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 46  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 425

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +G    I    V+    + L+    I          S
Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 984


>gi|228473669|ref|ZP_04058419.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228274883|gb|EEK13698.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 911

 Score =  232 bits (591), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 151/1030 (14%), Positives = 318/1030 (30%), Gaps = 161/1030 (15%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F  ++I   L                    V    P +R+   LR  F E    K+ I P
Sbjct: 2    FLEQVIEDYLENYADTPTG----------EVIFITPHRRSALFLRKIFSEKV-HKAAISP 50

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL--YPES 134
               +L +++E                + ++Q L +L ++         D  +    +   
Sbjct: 51   EFITLDNLLERISGI---------KKMPDLQGLFQLYKVYKEHTESEVDDFEKFVGWGRM 101

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
                       +   K++   ++ I+  E  W        E+         +F +    Y
Sbjct: 102  LWKDFSDIDQYLIAYKDIFPYMEAIKEVE-HWS-----VGEELTPMQQRHLEFWRTLGTY 155

Query: 195  WTER---LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
            +      + +                   +     +   +  G      A  +++  +  
Sbjct: 156  YNAIHKVMYQQKQGYQGFIARIAYEQIDAYRQANKEKLHLFVGFNALSVAQEKIIQYI-- 213

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                      L+       W+       N  S+      +                    
Sbjct: 214  ----------LEEMQADIYWDIEKHFLNNQHSAGYFIENYL------------------- 244

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                                              + K    +K   ++ +     +  + 
Sbjct: 245  ------------------------KRWKYYQRERKPKWITEEKTLPEIKIYGTPKQVNQI 280

Query: 372  ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
              +   L    +E  +++A++ +D ++   +   +    + I+I+ G PL  T    +++
Sbjct: 281  HLLTTLLDEIPEEEWEQTAIVLSDSDMLLPLLQAIDTNKLPINITMGYPLQQTPVHDLIS 340

Query: 432  SLLNA-IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            +     I        I  L++ P       E Y         +     +     I+DL  
Sbjct: 341  AYFKLYISGRWYHKEIKALLEQPFLTNLLSENYKKDTI--TYINEHNFSYVYKKILDL-- 396

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                                 + EED+EL  LL D              ++     +  I
Sbjct: 397  --------------------YVKEEDRELINLLFD--------------DEKDISVSKLI 422

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
             +  KL     +++   +   + NL +      L +     ++       +      I  
Sbjct: 423  ENVIKLLFFIKESLEKSDKENVLNLEYIYNFYELFNQIH-YLQKKYNYIDSVKSLYYIYN 481

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
             L+  + +  + E    L I+G LE++ ++F  +++  +NEG++PK  A N  +   +++
Sbjct: 482  DLLVKQKLSFRGEPLRGLQIMGVLEAQNIHFKNVLITSMNEGIFPKGNAVNSLIPFDVRA 541

Query: 671  DLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFF 728
            +L L T ++     ++ F      T   I   +   +    +  SR++ +LL        
Sbjct: 542  NLGLPTYKESDYMYSYYFYRILQHTHRAILLYNTDTDGLRGSERSRFVLQLLSDYRIRSQ 601

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                +      +                       + +   +S S +   + +P   Y +
Sbjct: 602  VKFPEVKIIKQNQIEIEKDKNIIEKLVAIATKIDPKHRK-GFSPSSLTTYVRNPIDFYQQ 660

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----KNTPEINHLMKQIIDSHF 843
            +IL +      ++  +    GT+ H I+  L    +N     KN  EI   +++  +  F
Sbjct: 661  QILDIRDEAEVEEIVEDRSLGTIIHRILELLYTPYVNSIISKKNIDEIRKKVRETTEIVF 720

Query: 844  EKENLPPHI---DIIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAKMAIESIGIH- 897
            ++      I   +I  +    +    FL  +EK  S   +  + V    ++ I+      
Sbjct: 721  KEYQQNDEISGKNIFVQQTIEEYVMKFLAIDEKNVSENVVTLLSVEQKIQIDIKFDEFPF 780

Query: 898  ---LTGFADRIDLLKSGFVDITDYKTGDNPKKETA--------------QKLIDPQLSLE 940
                 G  DR++   +  + I DYK+G    +E                +     QL + 
Sbjct: 781  PICFNGTIDRVERRGN-DIYIVDYKSG-IVDREDVKLSDKGWENLILDYKYSKAFQLLMY 838

Query: 941  AAAL-KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD-ELSEKSLKNLIEIV 998
            A  L K G     D   V N  + RLK  F       DK+    D ++ E+  + LIE++
Sbjct: 839  AYLLFKMGIIQDADNVYVGNYSFRRLKLGFIGFRNQKDKEISLVDSQVREEFEQKLIELL 898

Query: 999  TLLQNGEQPF 1008
              + + E PF
Sbjct: 899  KEIYDPELPF 908


>gi|289428079|ref|ZP_06429782.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|289158679|gb|EFD06880.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|313825513|gb|EFS63227.1| UvrD/REP helicase [Propionibacterium acnes HL063PA1]
 gi|314978139|gb|EFT22233.1| UvrD/REP helicase [Propionibacterium acnes HL072PA2]
 gi|315088602|gb|EFT60578.1| UvrD/REP helicase [Propionibacterium acnes HL072PA1]
          Length = 1058

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 46  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 425

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +G    I    V+    + L+    I          S
Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 984


>gi|239833144|ref|ZP_04681473.1| double-strand break repair protein AddB [Ochrobactrum intermedium
           LMG 3301]
 gi|239825411|gb|EEQ96979.1| double-strand break repair protein AddB [Ochrobactrum intermedium
           LMG 3301]
          Length = 406

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 148/408 (36%), Positives = 214/408 (52%), Gaps = 34/408 (8%)

Query: 1   MHNKKPN-----VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKR 55
           M  ++P      +F+I P +PF      ALL G LVE F  +P +PL LA+ TIYVPT+R
Sbjct: 4   MSARRPRDGKQRLFSIPPGTPFLPAFARALLEGRLVEGFPGNPSDPLALANATIYVPTRR 63

Query: 56  AIQELRSEFIEITGKK-------------------STILPIIKSLGDVVEEKFTADLLLS 96
           A + LRS  ++I   K                   S ILP IK LGDV E+    +   S
Sbjct: 64  AARALRSILVDINPAKGLSAKAVSGFAFGNASEKKSAILPTIKPLGDVDEDAAFFNAGSS 123

Query: 97  Y--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
              ++NPP+   +RLL LARLI  WR  LP  ++ L+    +S+P + ++AIWLA++LA 
Sbjct: 124 GVFDINPPIGTAERLLLLARLIRPWRESLPSHVRALFGVDDVSVPATTSDAIWLARDLAG 183

Query: 155 IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
           ++D +ET+  KW +L  +  E    WW +   FL I +  W + L E   S+P  ++  L
Sbjct: 184 LMDQVETDGAKWSELATIAPEDLADWWQVTLGFLNIVTNLWPDILAERKLSNPAAHRNDL 243

Query: 215 MRAEAEHLM-KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
           + +E + L      GP+I+AGSTGSIPATA L+S +A  PNGA+VLPGLD  +  A W  
Sbjct: 244 IWSEVKRLRTHPPAGPVIVAGSTGSIPATAELISAIAELPNGAVVLPGLDRDLDDAAWQL 303

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
           +        + N +   HPQ+ L KLLD +   REDV+ L ++      R  V+S++  P
Sbjct: 304 L-----ASATDNPSTYGHPQFGLRKLLDAMQTLREDVEHLDDMPASKRLRERVVSEALRP 358

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            +T+D      +E    ++      + LIEA NER         L   
Sbjct: 359 AETTDAWGKLDMEAD--SLHAAAQTIDLIEAANERGGGAGRRSRLARC 404


>gi|327329921|gb|EGE71675.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL097PA1]
          Length = 1058

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 123/1010 (12%), Positives = 263/1010 (26%), Gaps = 120/1010 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 46  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 425

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946

Query: 945 KAGSFSQIDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSL 991
            +G    I    V+    + L+    K + +   + +         +++ 
Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGKGQANPKVDYQSGLVDVPWPDEAE 996


>gi|262381670|ref|ZP_06074808.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296847|gb|EEY84777.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 959

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 140/1055 (13%), Positives = 292/1055 (27%), Gaps = 189/1055 (17%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            + +    P +R     +    E+        P I ++ D+  +          ++     
Sbjct: 21   SRLAFVFPNRRTGLFFQKYLSEVADT-PLFSPTILTINDLFIQLSGKQSADRISM----- 74

Query: 105  NIQRLLELARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                L  L  + I    +         + E  L+        +  A+ L   +  +   E
Sbjct: 75   ----LFTLYDIYIRQSGSTETFDEFLYWGEMLLNDFDDIDKYMANARMLFSNVTDLREIE 130

Query: 164  KKWEDLHALKNEKYGMWWL---------LAADFLK------IASKYWTERLVELNASSPV 208
              ++ L   +      +W              FL          + +   L         
Sbjct: 131  NDFDFLSDEQIAAIRSFWSSFYPRGDTPNQQQFLAVWQVLYDLYEEFRATLAAEGKGYEG 190

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                 ++ +                                             D     
Sbjct: 191  MIFREVVESMERGES--------------------------------------PDLPYER 212

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             ++  +   S +                 + L  L  +         VS+++       S
Sbjct: 213  IVFVGLNALSVSEE---------------RFLAQLQKREIADFYWDYVSDKVTDPDNKAS 257

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL------RMSL 382
                    S          K+P+ +K  +++ +I   +   +A  +   L          
Sbjct: 258  YFVSRNLKS-----FPSSMKLPSEEKVKTEIEVIGIPSGIGQAKHVYTLLSDWCKEAEMS 312

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK--- 439
             E   ++A+I  D +L   V   +      I+++ G PL+ T  +S++  +L        
Sbjct: 313  SEEALRTAVILPDEHLLIPVLNAIPEQIRRINVTMGYPLAGTPVASLIEYILALQKNVRY 372

Query: 440  -----LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                 L  F  +  ++ H       PE       ++L       NK      +L      
Sbjct: 373  IDRNPLFYFRDVLPVLNHRYILSTSPEI-----ISSLVKEITENNKIYISHTELGKT--- 424

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                             +            D++++ +  L                S  +
Sbjct: 425  -------------PLLEILFTPVTGVEAFSDYLIKVLEELNKVM------------SSLS 459

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                        D  ++    +F    +    +    IE           +  ++ R+ D
Sbjct: 460  DEEEEDATQRTNDLEQEFIFHYFTTVNRMREVMKDARIE------MKIDTFFRLLKRVTD 513

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              T+    E  S L I+G LE+R L+FD LI+  +NEG++P+  A N F+   ++    L
Sbjct: 514  TITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAANSFIPYNLRRGFGL 573

Query: 675  KTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLK 732
             T E      A+ F        H+      R N + T   SR++ +L           + 
Sbjct: 574  PTYEHQDSVWAYHFYRLIERASHVSLLYDTRSNGLQTGEVSRFVHQLHYH------YEVP 627

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP---RTYSFSEIKQLINDPYAVYARR 789
             R +  +               +          +    +  S S I   ++ P   Y   
Sbjct: 628  MRDKLVVYNVSSSKTPPLAVPKREDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSV 687

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------------KKRINKNTPEINHLMK 836
            +  +       +  +    G++ H ++ EL              K            + +
Sbjct: 688  VEGIREEEEVSETIESDVFGSILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIAR 747

Query: 837  QIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--- 891
                  F+ E +       +    +  K     LE + K+      I         I   
Sbjct: 748  AFASEFFKTEVVRSLTGQNYLIGEMIRKYVEKILERDGKLTP-FVYIESERKINGLISLS 806

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP----------QLSLE 940
            +   I L GF DR+D +    + I DYK+G       + + L +           Q+ + 
Sbjct: 807  DHSEIRLKGFIDRVDEVLD-AIRIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMY 865

Query: 941  AAALKAGSFSQIDCRKVANLFYIR-LKQKFKIDCI------TNDKKKYSADELSEKSLKN 993
                   + ++    +   ++Y+R L        +         +K       ++   + 
Sbjct: 866  CWMYAHLTENKGKTIQP-GIYYVRSLFADPFDPSVYHRIERGKSEKVEDFSGYAQAFEEG 924

Query: 994  LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            L   +  + N E PF      + K+     +  + 
Sbjct: 925  LRGCLDEIFNPEIPFT--QTPTGKACSYCPFKGIC 957


>gi|314986297|gb|EFT30389.1| UvrD/REP helicase [Propionibacterium acnes HL005PA2]
          Length = 1058

 Score =  232 bits (590), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 123/998 (12%), Positives = 256/998 (25%), Gaps = 117/998 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 46  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 425

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I + +  P   +  R          +        G+L H I         
Sbjct: 779 AGEIELSASHIGEFLACPRGWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +G    I    V+    + L+    I          S
Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 984


>gi|315077695|gb|EFT49746.1| UvrD/REP helicase [Propionibacterium acnes HL053PA2]
          Length = 1061

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 124/998 (12%), Positives = 256/998 (25%), Gaps = 117/998 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 49  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLA 399
            +      +       VA + A +       IA  LR +        +  A++T      
Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADSVAWRSMAVVTRHGGEL 368

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +G    I    V+    + L+    I          S
Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987


>gi|313827480|gb|EFS65194.1| UvrD/REP helicase [Propionibacterium acnes HL063PA2]
          Length = 1058

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 46  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 425

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAAALRS 545

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +G    I    V+    + L+    I          S
Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 984


>gi|315080857|gb|EFT52833.1| UvrD/REP helicase [Propionibacterium acnes HL078PA1]
          Length = 1061

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 132/998 (13%), Positives = 262/998 (26%), Gaps = 117/998 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +                  
Sbjct: 49  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRI-------------V 94

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           VS  +RLL         R  L       +PE       + A     A ++  +   +  E
Sbjct: 95  VSPSKRLLTAPEQEFRMRELLAARDMSDWPEE----LRTCAGTAQFASDVRVMASRLRQE 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHETLWALWQGSSWAASLRS 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 662 WSENLRAETRLLLVACSLARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +G    I    V+    + L+    I          S
Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987


>gi|313764134|gb|EFS35498.1| UvrD/REP helicase [Propionibacterium acnes HL013PA1]
 gi|314914864|gb|EFS78695.1| UvrD/REP helicase [Propionibacterium acnes HL005PA4]
 gi|314929975|gb|EFS93806.1| UvrD/REP helicase [Propionibacterium acnes HL067PA1]
 gi|315101552|gb|EFT73528.1| UvrD/REP helicase [Propionibacterium acnes HL046PA1]
 gi|327452205|gb|EGE98859.1| UvrD/REP helicase [Propionibacterium acnes HL087PA3]
 gi|328753881|gb|EGF67497.1| UvrD/REP helicase [Propionibacterium acnes HL087PA1]
          Length = 1061

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 49  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLANP 428

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +G    I    V+    + L+    I          S
Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987


>gi|332876742|ref|ZP_08444500.1| hypothetical protein HMPREF9074_00220 [Capnocytophaga sp. oral taxon
            329 str. F0087]
 gi|332685301|gb|EGJ58140.1| hypothetical protein HMPREF9074_00220 [Capnocytophaga sp. oral taxon
            329 str. F0087]
          Length = 937

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 142/1068 (13%), Positives = 299/1068 (27%), Gaps = 192/1068 (17%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F R +   L++                L  VT+  P KRA   +  +   ++  +    P
Sbjct: 4    FIRLIAQDLIHRFGTN-----------LRDVTVVFPNKRAGLFMNQQLAAVS-GRPVWAP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
              +++ ++ +                       L +  L  ++   +PD           
Sbjct: 52   RYRTISELFDSLSDFTRCDDI------------LSVCELHRVYAALVPD----------- 88

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDL-------HALKNEKYGMWWLLAADFLK 189
              P S        + +    D I+        L         L +  +           +
Sbjct: 89   --PESLDRFYGWGEIMLSDFDDIDKHLADPHKLFSNIQSIKELDHSDFLTPRQE-----E 141

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
                ++ +  +E N          L         +      I A                
Sbjct: 142  ALKHFFEDFSIEGN--------SRLKEKFLALWNRMDD---IYATFN------------- 177

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
            A      ++  G             T++     +              +L  +L  + + 
Sbjct: 178  ARLKEKGMLYEGALYKDVAEHLAERTDRIPADMTYVFVGFNVLNDVEKRLFSYLQKRGQA 237

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            +         +  +S   + +F+  +  +    + LE    +  K    +  I   +E  
Sbjct: 238  LFYWDYDVMYVGEKSRFEAGTFIRQNLKE--FPNALEETCFDNFKNPPRIEFIATTSENA 295

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
            +A  I   L  +L E ++ +A++  + +L + V           D ++  P+  T     
Sbjct: 296  QARYIPQWLDSALTEPEQDTAIVLCNESLLQPVL------HSLPDATSPHPVKRTNI--- 346

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
                   +        + + +   L+          R   A +   +R +  +  + +  
Sbjct: 347  ------TMGFPMTDTPVYSFINALLSLQTDGYDRDRRCFRAEQEKIVRSHPYAALLEEQD 400

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
                                             L+ +I   +  L      +        
Sbjct: 401  IFCPHAEN-----------------------HALLVYIRSLLEGLAAAFGQQKDR----- 432

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG-SCIKANAIEWIDI 608
                              +      L+ E   +    +   I  T    +         +
Sbjct: 433  ------------------KDDVYSQLYHEALYRAHQVISRFIRLTENRTLDVQPSTLRRL 474

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            +  ++   T+    E +  L ++G LE+R LNF  +++  +NEG+ PK      F+   +
Sbjct: 475  LRTVLGTTTIPFHGEPAVGLQVMGVLETRNLNFRHILMLSVNEGMLPKAVNDTSFIPYHL 534

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLI--YTRSLRENNIPTIASRWLQRLLVLGGTD 726
            +    L T +  I   A  F         I        +       SR+L++LL      
Sbjct: 535  REVFGLTTIQHKIAVYAFYFYRLVQRTERITFMYNIATDGLNKNEMSRFLRQLLAETDFP 594

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                + + GQ            T +      + +   +   R  S S +   I+ P   Y
Sbjct: 595  VELKILQSGQAVPADNGMEAAKTPEVMDILRRNYGSGQPSSRPLSPSALNAYIDCPLKFY 654

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID------ 840
             +++  +      +   D    GT+FH     + +K   +N       ++++++      
Sbjct: 655  YQQVAHIRQPKDPQNGLDNALFGTIFHEAAELIYRKLTERNPVIRRQDIERLLEGGETTL 714

Query: 841  -------------SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
                            E         ++ R +        L H+           +    
Sbjct: 715  LPYIEASFLKNFFEGREDTVFYNGQLLVARKVMASYLRQLLAHD-SRMEQFVLEEMEQEH 773

Query: 888  KMAIE------SIGIHLTGFADRID--LLKS-------GFVDITDYKTGDNPKKE-TAQK 931
              +++       + I + G  DR+D   +           + I DYKTG  P+K  + ++
Sbjct: 774  HRSVDIISDGHPLSIDIGGKIDRMDTVRMPDETTGQEVETLRIVDYKTGGTPEKAVSMEQ 833

Query: 932  LIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC--ITNDKKK 980
            L+ P         Q+ L A  +      Q      A LF++        D   + N ++ 
Sbjct: 834  LVQPAEHRPSYIFQIFLYAWVMTG---EQKRPVSPA-LFFVHKSNAEDYDPTIVFNRERV 889

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                   E   K L  ++  L N E PF        K     +Y  L 
Sbjct: 890  TDFSRFKEDFQKMLQGVLEELFNPEIPF--RQTSVPKICAYCDYKLLC 935


>gi|315092776|gb|EFT64752.1| UvrD/REP helicase [Propionibacterium acnes HL060PA1]
          Length = 1058

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 119/1003 (11%), Positives = 258/1003 (25%), Gaps = 106/1003 (10%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 46  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMAARLRQE 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A S    +IAL R   +  
Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAESVHRARIALTRPGTDVE 207

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSS 305

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 306 RLRRRANHSTSTDAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365

Query: 400 RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAI-----FKLNDFMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L                +ATL+ +P
Sbjct: 366 DVIATILAAEGIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQLSSRDVATLLSNP 425

Query: 454 LAKFGFPEKYLSRAKNAL-------ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
           LA       +       L         +      +       KS   D  +  ++ +   
Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSEDASTAE 485

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              +            L   +      +        S               +   ++  
Sbjct: 486 LDTACEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWASSLRR 545

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                      + +G       ++  +T + I         +    I  +  +   E   
Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGITGGQRLIEVVRQEQIPADRARESDEDRD 605

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA----EKYIG 682
            + ++     +   FD + + GL EG WP        +     S   L  A    E    
Sbjct: 606 GVSVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWSENLRA 665

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQRLLVLGG 724
           +        +  RH +   S+         S                    L  L+    
Sbjct: 666 ETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLPHIEDNADSLNFTSLTELVGELR 725

Query: 725 TDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               D  +  G                    R +        +++  P     A     S
Sbjct: 726 QVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEIELS 785

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            S + +L+  P   +  R          +        G+L H I     +     + PE 
Sbjct: 786 ASHVGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AENMDQWSLPEA 837

Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
              ++         E                    F    +     +    V +   + +
Sbjct: 838 LAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVRVDGTITV 894

Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
            S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A + +G    
Sbjct: 895 PSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVVASGGVEV 953

Query: 952 IDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSL 991
           I    V+    + L+    K + +   + +         +++ 
Sbjct: 954 IGPASVSGAELVHLRIGAGKGQANPKIDYQSGLVDVPWPDEAE 996


>gi|189501876|ref|YP_001957593.1| hypothetical protein Aasi_0454 [Candidatus Amoebophilus asiaticus
            5a2]
 gi|189501882|ref|YP_001957599.1| hypothetical protein Aasi_0460 [Candidatus Amoebophilus asiaticus
            5a2]
 gi|189497317|gb|ACE05864.1| hypothetical protein Aasi_0454 [Candidatus Amoebophilus asiaticus
            5a2]
 gi|189497323|gb|ACE05870.1| hypothetical protein Aasi_0460 [Candidatus Amoebophilus asiaticus
            5a2]
          Length = 969

 Score =  231 bits (589), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 135/1076 (12%), Positives = 292/1076 (27%), Gaps = 180/1076 (16%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F  E+   L     V            +      +P ++A++  +          +  LP
Sbjct: 8    FLEEVTEDLFQQYTVA----------DITRSIFILPGQKAVERFQQVLCNKIDNPA-WLP 56

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
             + +L   +E+     +  + +L         L+ L +    ++                
Sbjct: 57   QVLTLEPWIEQCSKITIAPNLDL---------LVLLYQTFQQFKAA-------------- 93

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG-----MWWLLAADFLKIA 191
                           L    DI++        L A   E+            A    +  
Sbjct: 94   --DEPFERFYGWGNMLLQDFDILDKCLVDPNQLFANLYEQKAITLTYEHLSEAQK--EAI 149

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              +W                    +   +                     TA L+     
Sbjct: 150  QSFWKSF---------EKRLSTQQQDFLKLWEILPHIY---------KRFTAELIKKGIG 191

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
            +                   N   E   N                 K+  +L        
Sbjct: 192  YAGLC---------YRELYNNLTKELLINYKHFFFIGFNALHPVEEKIFAWLHSNISTQF 242

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                 +  M  ++           T     T   +     IQ  F  +   EA+   E+ 
Sbjct: 243  YWDTDAYYMNDKNQEAGYYLRHHQTKPYFQTSFKKPFPARIQNNFKKINFFEANTAAEQV 302

Query: 372  ISIAIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
              ++  L+  +++        ++ ++ A+ +L   +   L     +++ + G P++ T  
Sbjct: 303  ELVSSQLQQLINQEGNSFQPHQAVIVLANEDLFLPMLHALPTNLQSVNTTLGYPITYTAS 362

Query: 427  SSILTSLLNAI---------FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
              ++  +L                   AI  L+KH   K+           +    +   
Sbjct: 363  YQLIEQILALQITTQQPTCPAGYFPTQAIIALLKHTPIKY-----CNQALASETIQLLTN 417

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
               +      L                +     R +    ++A  ++D +      L   
Sbjct: 418  HYTSYTSQKILSEASE-----------LYQAIFRPASSTIDIAQYVIDVMTLVKAQLEA- 465

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                                          +      L  E  G+ +  L    +     
Sbjct: 466  ------------------------------QEDSSLALEEEALGELIKQLSYIQVIITPL 495

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             K +   +I +  +LI    +  K + S+  + IL   E+  L+F  + + G+NEG  P 
Sbjct: 496  YKVSIERFIQLFRQLIRSLQLTFKEKTSAKGIQILRIWETANLDFKYVFIVGMNEGNLPA 555

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIG-QAAHDFEMAN-GTRHLIYTRSL-RENNIPTIAS 713
            +TA+  F+   ++    L T + +     A+ F       + +  T +       P   S
Sbjct: 556  STAQGSFIPYNLRKGYGLPTMDIFQATLDAYYFYRLLQRAQQVYITYNTPSSATNPKEVS 615

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
            R+L +LL         +              +         K  +       + R+ + +
Sbjct: 616  RYLWQLLYESKLPIEQHYINTAIYTPTICPIIIKKDDGVLLKLEEFVVKNGQEKRSLTPA 675

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFK-KDPDRTDRGTLFHNIITELIKKR--------- 823
             +   +      Y R IL+L        +D D    G+LFH ++ +L             
Sbjct: 676  ALNTYLGCSLRFYFRYILQLQVPQQLLIEDTDAIRFGSLFHKVMEKLYAPLQIARKGSMV 735

Query: 824  INKNTPEINHLMKQIIDSHFEKE------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
               +  ++   ++ II   F                +I + +  K+ +  LE ++K    
Sbjct: 736  QKNDLEKLKSQLQAIIAEVFSNALYSNHILQWGGEHLIEQEVMQKVVNKILEIDKKHTP- 794

Query: 878  IEKIFVNIPAKMAI-------ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETA 929
               + + +  + ++           + L+G  DRID  +   + + DYKTG      E  
Sbjct: 795  FTLVGIEVGKQQSLMIHFRLTSDKVVALSGIIDRIDQKQD-SIRVIDYKTGGDEKYVEQI 853

Query: 930  QKLID----------PQLSLEAAA----LKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
              L D           Q    A          ++  +         +        +    
Sbjct: 854  SNLFDRSTAQKTKVIFQTFFYAWLFKKHANNSAYKIMPGIVNTRSAFNTNFDPRLMVKQV 913

Query: 976  NDKKKYSADELSE---KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            + K     ++++    +    L  ++  + + + PFI              Y  + 
Sbjct: 914  DTKDYRYIEDITPYQSEFETGLELLLQEILDPQIPFI--QTEDHFQCATCPYKRIC 967


>gi|86131070|ref|ZP_01049669.1| probable DNA repair protein [Dokdonia donghaensis MED134]
 gi|85818481|gb|EAQ39641.1| probable DNA repair protein [Dokdonia donghaensis MED134]
          Length = 896

 Score =  231 bits (589), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 138/1010 (13%), Positives = 302/1010 (29%), Gaps = 176/1010 (17%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            ++   +P++RA   LR +  +    K++  P I S+ + +          + +L      
Sbjct: 19   NLIFILPSRRAGNTLRKKIAQR-AHKTSFAPQIFSIEEFISHITGLKSASNVDL------ 71

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
               +  L         K                 +S       A+++    + I+     
Sbjct: 72   ---IFNLFESYTEVVEKE--------------KLVSFQTFCGWAQSILSDFNEIDRFLLD 114

Query: 166  WEDLHAL--KNEKYGMWWLLA--------ADF---LKIASKYWTERLVELNASSPVGYQI 212
             + +       ++    W  +         DF   L      + E+ +  +A        
Sbjct: 115  QKKVFNHLKDIKELSDHWSSSTNEIVVNYIDFWNNLLEIYTVFCEKSLHTDAVHQGYIYR 174

Query: 213  ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
              +     +                           +++      V  G         +N
Sbjct: 175  QAVEVIEHY---------------------------ISSSTQVRHVFLG---------FN 198

Query: 273  TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             +      I  +         Y                       + +       +    
Sbjct: 199  ALNTAEQQIIQAILASGNSEIY------------------WDTEKSFIKNPYHETNLFIK 240

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALI 392
                     +    +   +      ++       +  +A ++   L  +  +   K+A+I
Sbjct: 241  KYKRDWAYYSANDFSWSFDNYSTSKNINTYACSQDVLQAKTLGTILEKTSQDALSKTAII 300

Query: 393  TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA----IFKLNDFMAIAT 448
              D  L   V   L      ++I+ GIP+  T  +S    LL+           +  +  
Sbjct: 301  LGDEALLLPVLNALPTHIHKVNITMGIPIGKTPTASFFEQLLSLKKNPQTNGYYYKDVLK 360

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            ++++P+                      +   +   I     ++L+ +  +  N     +
Sbjct: 361  VLRNPIT---------QALLKETATTLQQEIISKNLIYISTGVLLNTVNQEHLNIAKTLF 411

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                      ++  L     Q I+ L T                              DE
Sbjct: 412  LEWNDNPKLAVSNCL-----QIISDLRTIY----------------------------DE 438

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
             +    + +        +    ++E    I  +   +I     +I  ET+  K +    L
Sbjct: 439  TQNSLQVEYLYGFYVAFNKLKTLMEVREHIS-DISTFILFYRDIISSETIDLKGDPDQGL 497

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYIGQAAHD 687
             I+G LESR+L++D +IL  +NEG+ P   ++N ++   ++   +L T  EK    A H 
Sbjct: 498  QIMGVLESRVLDYDHVILTSVNEGILPSGKSQNSYIPYDLKKLYDLPTYSEKDAVYAYHF 557

Query: 688  FEMANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
            + + +    +    +   +    +  SR+++++   G  +                 ++ 
Sbjct: 558  YHLLHRASTVDLLYTTHSSGLGSSEQSRFIRQIEEEGIHNLTKYTVTPASHSTSKKSQVI 617

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
              T +            +   R  S S +   + +P   Y R IL +D     ++     
Sbjct: 618  AKTPEV------VTKLSQFLKRGISPSALTTYLRNPVLFYERYILGIDSSDEVEETVAAN 671

Query: 807  DRGTLFHNIITELIKKR-----INKNTPEINHLMKQIIDSHFEKENLPPHIDI----IWR 857
              GT+ HN + EL K              +   ++Q + + F+ E    HI      I  
Sbjct: 672  TMGTIVHNTLEELYKPHIGIILTEDILKNLIKGIEQEVRNQFKSEYGLTHIQEGKNKIIY 731

Query: 858  HLFHKISHSFLEHEEKIQSSIEKI---FVNIPAK-MAIESIGIHLTGFADRIDLLKSGFV 913
             +  +  H++L+ E  +    + +    V    + +++    I L G  D ++   +G +
Sbjct: 732  AVICRYVHNYLKREISLLKKGDTVIIQAVEDDLRDISLTD-TITLRGKVDLVEQR-NGHL 789

Query: 914  DITDYKTGDN-------PKKETAQKL-----IDPQLSLEAAALKAGSFSQIDCRKVANLF 961
            +I DYKTG            E             Q+ + A  L      Q        + 
Sbjct: 790  NIIDYKTGKVTQTDLNLKSYEDLLLPEGKFEKAFQVLMYAFMLHKKKPLQF-PVNAGIIS 848

Query: 962  YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
            +  L+  F       +++  +AD L  +    L  +V  + +   PF   
Sbjct: 849  FKNLQSGFLPFKYNRNQEI-TADTLL-EFEAVLKRLVKEILDPSIPFTER 896


>gi|295130854|ref|YP_003581517.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|291375110|gb|ADD98964.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|313771952|gb|EFS37918.1| UvrD/REP helicase [Propionibacterium acnes HL074PA1]
 gi|313801692|gb|EFS42932.1| UvrD/REP helicase [Propionibacterium acnes HL110PA2]
 gi|313807184|gb|EFS45677.1| UvrD/REP helicase [Propionibacterium acnes HL087PA2]
 gi|313809681|gb|EFS47415.1| UvrD/REP helicase [Propionibacterium acnes HL083PA1]
 gi|313819378|gb|EFS57092.1| UvrD/REP helicase [Propionibacterium acnes HL046PA2]
 gi|313830017|gb|EFS67731.1| UvrD/REP helicase [Propionibacterium acnes HL007PA1]
 gi|313838406|gb|EFS76120.1| UvrD/REP helicase [Propionibacterium acnes HL086PA1]
 gi|314967656|gb|EFT11755.1| UvrD/REP helicase [Propionibacterium acnes HL037PA1]
 gi|314975742|gb|EFT19837.1| UvrD/REP helicase [Propionibacterium acnes HL045PA1]
 gi|315095787|gb|EFT67763.1| UvrD/REP helicase [Propionibacterium acnes HL038PA1]
 gi|315098849|gb|EFT70825.1| UvrD/REP helicase [Propionibacterium acnes HL059PA2]
 gi|327442648|gb|EGE89302.1| UvrD/REP helicase [Propionibacterium acnes HL043PA1]
 gi|327453454|gb|EGF00109.1| UvrD/REP helicase [Propionibacterium acnes HL092PA1]
 gi|328761487|gb|EGF75011.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL099PA1]
          Length = 1058

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 46  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 425

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +G    I    V+    + L+    I          S
Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 984


>gi|314920397|gb|EFS84228.1| UvrD/REP helicase [Propionibacterium acnes HL050PA3]
 gi|314956489|gb|EFT00777.1| UvrD/REP helicase [Propionibacterium acnes HL027PA1]
 gi|314957333|gb|EFT01436.1| UvrD/REP helicase [Propionibacterium acnes HL002PA1]
 gi|327452696|gb|EGE99350.1| UvrD/REP helicase [Propionibacterium acnes HL083PA2]
 gi|328752852|gb|EGF66468.1| UvrD/REP helicase [Propionibacterium acnes HL025PA2]
          Length = 1058

 Score =  230 bits (586), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 46  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLANP 425

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +G    I    V+    + L+    I          S
Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 984


>gi|315223786|ref|ZP_07865635.1| conserved hypothetical protein [Capnocytophaga ochracea F0287]
 gi|314946232|gb|EFS98232.1| conserved hypothetical protein [Capnocytophaga ochracea F0287]
          Length = 909

 Score =  230 bits (586), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 139/1015 (13%), Positives = 296/1015 (29%), Gaps = 172/1015 (16%)

Query: 42   LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              +  +      KR    L+  F E     +TI P    + D+                 
Sbjct: 17   DKIERLVFVTTGKRPALFLKKHFAEQIKH-ATIAPEFIGIADLFTRISDLQ--------- 66

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            P+SN+  L E     +      PD  ++                +   +        I+ 
Sbjct: 67   PISNLPLLFEFYDCYVKTCKDTPDSFEE---------------FLSWGQTALKDFSEIDQ 111

Query: 162  EEKKWEDL-HALKNEKYGMWW----------LLAADF---LKIASKYWTERLVELNASSP 207
                 + +   +   K    W               F   L         +L E+     
Sbjct: 112  YLVNPDKIFPYIHVLKEVEHWSGMDELSEMQKKHLAFWNSLGDYYFALNSKLTEMGKGYG 171

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                   +    ++L   +    I  G      A                          
Sbjct: 172  GFIAKKAVEELPKYLQTHSNSIHIFVGFNALSKAE------------------------- 206

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
                                     Q+ +  +L  L  +          +  +   +   
Sbjct: 207  -------------------------QHVIQSILMDLGGE----IYWDGDTYFLNNPAHDA 237

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
                     S           I +  +   ++ L        +A S+A  L+ +  +  +
Sbjct: 238  GFFLRKYINSWRYYQTHKPKFIQSNYEKEKELYLTGVPKSINQAHSVAELLKNTPAKALE 297

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL-NDFMAI 446
            K+ALI AD NL   V   +     +++I+ G PL  T  + +  +           +  I
Sbjct: 298  KNALIIADENLLIPVLQAVQP-KTSVNITMGYPLQQTPLNDLFVAYFRLHLSKSFYYKDI 356

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              L+  P       E         +     + N        L   V +            
Sbjct: 357  LNLLSQPFLHTLLKE----EVVCHISEFIKKHNLTYITRKKLFESVDETEHEMLTLLFP- 411

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                     D +   L++  I   IT + + K   +       ++               
Sbjct: 412  ---------DAKGKALIITLIDNAITLIYSLKAQIDPESNTHLLTQ-------------- 448

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                      +      L +   ++ E       +          ++   ++  + E   
Sbjct: 449  ---------EYAYRFFQLFNQLKQLQEQ-YGYIDSVKTLYHFYLDVLQKSSLNFRGEPLE 498

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L ++G LESR L+F+ +I+  +NEGV P   + +  +   ++ +L L T ++     ++
Sbjct: 499  GLQVMGVLESRSLDFERVIITSVNEGVLPLGKSDSSLIPYDVKYELELPTYKERDAVYSY 558

Query: 687  DFEM-ANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDF-FDNLKKRGQCYLDWTR 743
            +F       + +        N++ +   SR++ +LL    +     +  K  + Y    R
Sbjct: 559  NFYRILQRAKQVHLFYDTEMNSLKSKEKSRFILQLLAEKISTHKVVHQIKAPEVYPAVLR 618

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
             L+                     +  S S +   I +P   Y +++L++      ++  
Sbjct: 619  PLNIKKTTSVI-----DALKALAEKGISPSALTTYIRNPLTFYEQQVLQVYEEKEVEETV 673

Query: 804  DRTDRGTLFHNIITELIKKRINKNT---------PEINHLMKQIIDSHFEKENLPPHIDI 854
            +    G + H  + +L    +N+           P +   +++  +  +   +     + 
Sbjct: 674  EVRTFGNIVHGTLEDLYTPFLNEILTEEHIKKMQPLVLPTIEKCFEEEYRSTDFRTGKNW 733

Query: 855  IWRHLFHKISHSFLEH---EEKIQSSIEKIFVNIPAKMAIESIG----IHLTGFADRIDL 907
            +  ++  K   SFL     E K  + I  +++    K+  ++      ++  G  DR+D 
Sbjct: 734  LIFNVIEKYVRSFLTLELNEIKSGTEIIPLYLEQKIKIPFQASHLPFLVNFKGIIDRVDR 793

Query: 908  LKSGFVDITDYKTGDNPKKE-----------TAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
              +G + I DYKTG   + +             +     QL      +    F   +   
Sbjct: 794  R-NGVLHIIDYKTGIVEETDVRIKDWENLITDIKYGKAFQLLTYTYMITQ-HFKIDEPMI 851

Query: 957  VANLFYIRLKQKFK--IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
            VANL + RL++ F      I   K      +      +   +++  + + E+PF 
Sbjct: 852  VANLSFKRLQKGFLRFHTHIDKVKDCDVTAQTLALYSQYTEQLLQEIFDIERPFY 906


>gi|302385433|ref|YP_003821255.1| ATP-dependent nuclease subunit B [Clostridium saccharolyticum WM1]
 gi|302196061|gb|ADL03632.1| ATP-dependent nuclease subunit B [Clostridium saccharolyticum WM1]
          Length = 1148

 Score =  230 bits (586), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 120/941 (12%), Positives = 265/941 (28%), Gaps = 128/941 (13%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
                 L  ++  +       E L+    +            + +  + + + + +   ++
Sbjct: 117  GFISQLKSMLSELYQYGITPEMLNQGIPDNVSPMLRQKLSDISVIYQGFKDYIRDKYITT 176

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                   ++              I + G TG  P   R++  + N+    IV   +D   
Sbjct: 177  EEIL--DVLCRVLPRSELIKNSVITLDGYTGFTPVQYRILKLLLNYSKRVIVTVTIDPSE 234

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL--GNVSNEMYGRS 324
                                  S    + L +L       +E    L        +    
Sbjct: 235  --------NLNRKTGVQELFHMSRQMIWKLNELAKETGTGKEKDILLKNHPAVRFLGAAV 286

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
                +     +  D    ++   K  + Q     + LI+A N  +E   +  ++   +  
Sbjct: 287  TESREGTYGENALDFLEQNLYRYKGISCQDAPGSIRLIKAINPMDEVAFVIRSIEEEIRY 346

Query: 385  NK---KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                 +  A+IT D    +  +  +    GI   +     +       ++ + +  I K 
Sbjct: 347  QGLRYRDMAVITGDIGGYSNEIIHQFQLNGIPYFLDDKKSILKNSMVELIRAAMEIIQKD 406

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
              + ++   ++  L      E+   R +N +  + +RG K      +             
Sbjct: 407  FTYESVFRYLRTGLITAKEDEEKADRLENYVIAMGIRGFKKWDSQWE------------- 453

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK--TNKNSTCGNLSISDWTKLTV 558
                   W     E + E      + I+  +  L      T+        +++     T 
Sbjct: 454  ------GWYRGGKELNLEELNRYREEIMAPLRRLKAAFGETDSTVASMTRAVTALLMETG 507

Query: 559  TCLQNVC-----LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
               + +               + + +    +  LF ++         +  E+ +I+    
Sbjct: 508  IQEKMLAYEEKFRAMGEFTLAMEYSQVYGLVMDLFDRLAGLLGEEHVSRREYGEILDAGF 567

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                V         + +     +RL +   L   G+N+G+ P    K+   +   +  L 
Sbjct: 568  SEIQVGLIPATLDRVVVGDITRTRLDHIKVLFFVGVNDGIVPVKKEKSSLFTDREREFLG 627

Query: 674  ------LKTAEKYIGQAAHDFEMANGTRH--LIYTRSLREN-NIPTIASRWLQRLLVLGG 724
                    TA +   +      +A       L+ + +           S  +  L  L  
Sbjct: 628  DHQMELAPTAREEGFRQRFYLYLALTKPEKRLVLSYAAMNGSGKSLRPSTLIGELKKLFP 687

Query: 725  TDFFDN---------LKKRGQCYLDWTR------------KLDYTTKQPHYKRPKPFPPL 763
                 +         +++      D  R            +L     +    R +     
Sbjct: 688  GLSEASPSRLSVPLTMREAKDRLADGLRDYGKRGEERRFLELLRAFLKSGEHREEGKRLT 747

Query: 764  EAQPR--------------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
            EA                       + S + ++Q  +  YA +    L+L      + + 
Sbjct: 748  EAAFHAYEEKGIGKLAAKALYGSVISGSVTRMEQYASCAYAHFLSYGLELMERQ--EYEL 805

Query: 804  DRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFEKENL----PPHI 852
               D G LFH+ I    ++   +          E   L+ + +    E+           
Sbjct: 806  AAMDIGNLFHDAIGLWFQRMKEEGRDFKTLTEEERKSLVHECVTKVTEEYGNTILKSSAR 865

Query: 853  DIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIE---SIGIHLTG 900
            +        +I+    +   E+  +     +   +          M I       IHL G
Sbjct: 866  NAYLAGKVERITDRTVWALSEQLKKGDFVPVGFEVSFSAADQLKAMRIPLSKEEAIHLRG 925

Query: 901  FADRIDLLKSGFVD---ITDYKTGDNP-KKETAQKLIDPQLSLE--AAALKAGSFSQIDC 954
              DR+DL +        I DYK+G       +    +  QL +   AA        +   
Sbjct: 926  RIDRLDLCEDEEAVYVKIIDYKSGSTSFDLSSLYYGLQLQLVVYMDAALEMEERRVEDKP 985

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
               A +FY  +      D + + + + + +E+S K  K L 
Sbjct: 986  VVPAGIFYYNIN-----DPVIDREGEMTDEEVSGKIQKQLR 1021


>gi|154492641|ref|ZP_02032267.1| hypothetical protein PARMER_02275 [Parabacteroides merdae ATCC 43184]
 gi|154086946|gb|EDN85991.1| hypothetical protein PARMER_02275 [Parabacteroides merdae ATCC 43184]
          Length = 976

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 150/1067 (14%), Positives = 312/1067 (29%), Gaps = 149/1067 (13%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
            PF  ++     +    E            + +    P +R     +    E++ +K    
Sbjct: 3    PFLYQVASLFYSEYGAEV-----------SRLAFVFPNRRTGLFFQKYLSEVS-EKPLFS 50

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIW-RNKLPDIIKDLYPES 134
            P I ++ D+  +          ++         L +L  + L    +         + E 
Sbjct: 51   PTILTINDLFVQLSGKQAADRISM---------LFKLYDIYLRHSGSSETFDEFLYWGEM 101

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
             L+        +  A+ L   +  +   E  +  L                + +     +
Sbjct: 102  LLNDFDDIDKYMADARMLFTNVTDLREIENDFSFLSP--------------EQIAAIRTF 147

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            W+    + +  +P   Q   +              I+ A  T    A    ++T      
Sbjct: 148  WSSFYPKGD--TPNQEQFLAVWQ------------ILYALYTDLREA----LATEGKGYE 189

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
            G I    ++        +         T            +  + L  L  +        
Sbjct: 190  GMIFREVVEQMEKDECCDL------PYTKVVFVGLNALSVAEERFLSGLQKRGIADFYWD 243

Query: 315  NVSNEMYG-RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
              S ++    +               +  +  +  I N       + +I   +   +A  
Sbjct: 244  YASPKVTDPDNKASYFVERNLRQFPSQLIENGQLTIDNEDDDKKKIEVIGIPSGIGQAKQ 303

Query: 374  IAIALRMSLDENKKKS------ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
            +   L     E++  +      A+I  D +L   V   +      I+++ G PL+ T  +
Sbjct: 304  VCSILNELCKEDEMSAEEALRTAVILPDEHLLIPVLNAIPEQIKRINVTMGYPLAGTPVA 363

Query: 428  SILTSLLNAIFK--------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            S++  +L             +  F  +  ++ H       PE       + L       N
Sbjct: 364  SLMEYILALQKNIRYVDRRPVFYFRDVLPILNHRYISTTSPE-----VVSNLVKNISENN 418

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
            K      DL                       +            D+++  +  L     
Sbjct: 419  KIYISYDDLNKT----------------PLLSILFTPVTAVETFSDYLINVLQELNK--A 460

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
             +       S++  T+   T    +      +   ++      T++ +   + E    +K
Sbjct: 461  VEGGKLKVESVNSDTEPLSTFNSQLSTINDIEQEFIFHYFA--TVNRMKEVMREANVEMK 518

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   +  ++ R+ D  T+    E  S L I+G LE+R L+FD LI+  +NEG++P   A
Sbjct: 519  ID--TYFRLLKRVTDTITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPLRKA 576

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQ 717
             N F+   ++    L T E      A+ F        H+      R N + T   SR++ 
Sbjct: 577  ANSFIPYNLRRGFGLPTYEHQDSVWAYHFYRLIYRASHVSLLYDTRSNGLQTGEVSRFVH 636

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            +L         + L                 T++      +         R  S S +  
Sbjct: 637  QLHYHYEEPIQNKLVVYNVSSSKTPALQVAKTEEV---MNRLADFRSGGTRAISASAVNT 693

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------------KKRI 824
             ++ P   Y   +  +       +  +    G++ H ++ EL              K   
Sbjct: 694  YLDCPLKFYFSVVEGIREEEEVSETIESNVFGSILHKVMEELYQPFCGKMVTADLLKAIR 753

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIF 882
                     + +   +  F+ + + P     +    +  K     LE + K Q+    I 
Sbjct: 754  KDTPMLTGAVARAFAEIFFKTDIVRPLTGQNFLIGEMIRKYVEKVLERDAK-QTPFRYIE 812

Query: 883  VNIPAKMAIESIG---IHLTGFADRIDLLKSGFVDITDYKTGDNPKK-ETAQKLIDP--- 935
                 K          I L GF DRID ++   V I DYK+G    +  + + L D    
Sbjct: 813  SEKKIKCLFPLTDKSNIQLKGFIDRIDEVRD-VVRIIDYKSGGGTTQFTSVEALFDKADT 871

Query: 936  -------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT-------NDKKKY 981
                   Q+ + A             +    ++Y+R       D            ++  
Sbjct: 872  DRSKAVMQVFMYAWMYNRSVQLSTAIQP--GIYYMRTLFSSSFDPGIYHRTDRFKTEQVL 929

Query: 982  SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                       +L   +  + + E PF+     + K+ +   +  + 
Sbjct: 930  DFANYRTDFEDSLRNCLDEIFDTETPFV--QTPNGKACMYCPFKDIC 974


>gi|297626181|ref|YP_003687944.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp.
            shermanii CIRM-BIA1]
 gi|296921946|emb|CBL56506.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp.
            shermanii CIRM-BIA1]
          Length = 1123

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 126/1077 (11%), Positives = 296/1077 (27%), Gaps = 157/1077 (14%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD--VVE 86
             LVE           +  + +   ++ A Q LR+  +      S + P+I ++    +  
Sbjct: 36   ALVEAVAQRVEAGAHMDRLVVLTWSRPAAQRLRARIVARLAS-SQLAPVITTVPGWCLAL 94

Query: 87   EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
            ++    L     L   ++  ++ +++  L++     L                 +    +
Sbjct: 95   QRRFGHLDADGQLPHVLTGPEQQMQVRELVVQLGRDL-----------WPESVRAAIATM 143

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              ++ L   +     +    +DL  L        W+    F +        +     A  
Sbjct: 144  AFSQELRTGMARARQQGLDPDDLVRLGRRTGREEWVSMGLFFENYLDVLDAQPAWDYAEL 203

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                ++ L+ A    ++      +          +   L+  V     G  V    D   
Sbjct: 204  VHRTRLLLLEAPVSSVLTEEIEGVFCDEFAELDRSQIALLEQVHQV--GIPVAATADPQS 261

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +     ++          +  P      L   L       +              +
Sbjct: 262  SVFAFRGADPRAVADFGRRFEVTGLPGPERIDLSTSLRGTAGLQR-------------GI 308

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--- 383
             S     P       T   E    +       +     +    E   +A  LR +     
Sbjct: 309  ASLIARNPVAGGGSGTRPHEAGAVSGADRAEQIVCRSYETAAAEIAGVAEDLRTARLAGV 368

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK---- 439
               +++ +  A R     +   L   GI +++ AG  ++ +  + ++T +          
Sbjct: 369  MWSQQAVICRAGRGQLGTIARGLANQGIPVEV-AGSDIALSEQACVVTLMDALAVALGFS 427

Query: 440  ---LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                 D   +  L+  PL      +    R               S  +  ++  ++ R 
Sbjct: 428  RRVPPDPDQLDRLLLSPLTSL---DPTALRRVGGALWHEAASGTTSDPMTLVRQFLMRRA 484

Query: 497  ATQKNNTHVPHWQSR-----------------------------------LSEEDKELAV 521
                 +  VP   ++                                    ++ D E   
Sbjct: 485  GDHLPSPVVPPATAQDVGALVHRPDTSGAAPTDVTTPPTGPTAQTATSALPTDPDLEPVR 544

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             L   +      ++  +   +        +DW         +      +   +L      
Sbjct: 545  ELAALLGDAAARIMRGEGAYDVLWRLWDGTDWPSRLRGEALSGSASSGQANSDLDAVLAL 604

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
              +++   ++               ++  + I G+  +    +   + +L    ++ L +
Sbjct: 605  FDVAARHMELTGQKGAETL----IAEVSGQEIPGDQARESDPRGRGVQVLTAHRAKGLEW 660

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSD-----LNLKTAEKYIGQAAHDFEMANGTRH 696
            D +I+ G  EG WP N      LS  +             A     + A     +   + 
Sbjct: 661  DRVIIMGAAEGSWPGNRRGAGLLSAELLDADDPGLAPAPGAWMQQERRAFVLAASRARKE 720

Query: 697  LIYTRSLRENNIPTIASRWLQRL-------------------------LVLGGTDFFDNL 731
            L+ T +L   +    ASR+++ L                          V         L
Sbjct: 721  LVITANLGSGDEQAQASRFVRELGGQVLAVPHDTRRPRSLQGLVGELRRVTADQRSTAGL 780

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL------------------------EAQP 767
            ++     L     +    ++       P                              + 
Sbjct: 781  REAAAHQLGQLAVVRDDQQRALVPGADPRSWWGLGGLSGRHGTPSPAGVGEPEGPTRDKA 840

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
               S + +++LI  P   +     +      F         G++ H +    +   ++++
Sbjct: 841  IRLSVTGLQKLIACPRQWFLDVAARGATTGGF-----AAGVGSVIHLLAEHAVTDHLSED 895

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDI--IWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
                   +   +D  +   ++        I R   H++   F   +    + +  + V +
Sbjct: 896  ------QLHDALDEAWNDLDVHQQGWRTLIERSRAHEMITRFERWQGGQPTEVLGVEVPV 949

Query: 886  PAKMAIESIGIHLTGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAA 943
                 I    + L G  DR++  + SG + I D+KTG   P +  A    + QL+    A
Sbjct: 950  RHTFVIGGQPLELVGSIDRLERDRTSGRIRIIDFKTGSRAPSRTEAAS--NLQLAAYQLA 1007

Query: 944  LKAGSFSQI----DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            +  G+  ++         A L ++RL    +   +     +   D+    + + L  
Sbjct: 1008 VMRGACRELTGSTPAMDGALLVFLRLPAGARDPLLLKVVGQPGLDDHPYPAAEQLAN 1064


>gi|282853718|ref|ZP_06263055.1| UvrD/REP helicase [Propionibacterium acnes J139]
 gi|282583171|gb|EFB88551.1| UvrD/REP helicase [Propionibacterium acnes J139]
          Length = 1085

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 119/1004 (11%), Positives = 260/1004 (25%), Gaps = 106/1004 (10%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 73   RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 129

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                ++   +  L+                        + A     A ++  +   +  E
Sbjct: 130  ----EQEFRMRELLAA-----------RDISDWPEELRTCAGTAQFASDVRVMAARLRQE 174

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 175  GCDPQDLTEAGTASGVPEWRMLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 234

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 235  VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 287

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                           +L + +D   +        +         + +S          ++
Sbjct: 288  ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSS 332

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
             +  +   +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 333  RLRRHANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 392

Query: 400  RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
              +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 393  DVIATILAAEGIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 452

Query: 454  LAKFGFPEKYLSRAKNAL-------ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            LA       +       L         +      +       KS   D  +   +     
Sbjct: 453  LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSGDAITAE 512

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
               +            L   +      +        S               +   ++  
Sbjct: 513  LDTACEVYSVPPSLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWASSLRR 572

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                       + +G       ++  +T + I         +    I  +  +   E   
Sbjct: 573  RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRD 632

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA----EKYIG 682
             + ++     +   FD + + GL EG WP        +     S   L  A    E    
Sbjct: 633  GVSVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWSENLRA 692

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQRLLVLGG 724
            +       ++  RH +   S+         S                    L  L+    
Sbjct: 693  ETRLLLVASSRARHQLLLCSVDSAEEGKRPSGLVAGLPHIEDNADSLSFASLTELVGELR 752

Query: 725  TDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
                D  +  G                    R +        +++  P           S
Sbjct: 753  RVIADESESPGVRTEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQDDMDGEIELS 812

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S + +L+  P   +  R         F+        G+L H I     +     + P+ 
Sbjct: 813  ASHVGELLTCPRRWFMTRRAGASSGSAFRASI-----GSLVHRIC---AENMDQWSLPKA 864

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
               ++         E                    F    +     +    V +   + +
Sbjct: 865  LAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVRVDGTITV 921

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
             S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A + +G    
Sbjct: 922  PSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVVASGGVEA 980

Query: 952  IDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSLK 992
            I    V+    + L+    K + +   + +         +++  
Sbjct: 981  IGPTSVSGAELVHLRIGAGKGQANPKVDYQNGLVDVPWPDEAEA 1024


>gi|46580468|ref|YP_011276.1| hypothetical protein DVU2063 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449887|gb|AAS96536.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234210|gb|ADP87064.1| hypothetical protein Deval_1915 [Desulfovibrio vulgaris RCH1]
          Length = 984

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 119/933 (12%), Positives = 236/933 (25%), Gaps = 126/933 (13%)

Query: 11  IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG- 69
           +     F   +        L    R     P       +  P  R  + L        G 
Sbjct: 18  VPWDCDFLEAV--------LQLALRLTRNRP---GDAVLVFPHGRPRRHLIDRLRNAPGV 66

Query: 70  KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129
            K  +LP + ++ ++                  V  + R+  L   +        D+   
Sbjct: 67  PKPCLLPQMYTVQELF---TRIRAEREQRPPQTVGLLDRVGLLLECV-------TDLASP 116

Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
             P           +       L+ +++   ++  + +DL  +   +   +     + L 
Sbjct: 117 GTPLCEALTAGGQRHFFPWGARLSALLEDCFSQGLRPDDLTHM-EGQVAPFAASLLENLG 175

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
              + +T  L+E   S+P       +              +IIAG         RL   +
Sbjct: 176 RIHERYTLALMERGWSTPGFDAFRAVDGLEGTPSCLEGRTVIIAGFAALNGTEERLFEHL 235

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
             H    I L                         + T   H                  
Sbjct: 236 WRHCGADICLHT-----------DAAVARMGQERVHWTCEDH------------------ 266

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                                        + +       +   +     V+  E  +   
Sbjct: 267 --------------------------VRWLTSWRAEAELLHAPRAFKPRVSFCEGYDLHS 300

Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
           +   +   L+ +  E+   +A++  D  L   V   L      ++IS G PL  +    +
Sbjct: 301 QLHELGTLLQNT--EDLSSTAVVLPDTGLLMPVLHHLPT--KAVNISMGYPLVRSTLFRL 356

Query: 430 LTSLLNAIFKL-----NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
           L +L+             +     L++HP  K    E    R    +  +     +    
Sbjct: 357 LETLMRLQETRGSNGLYHWRECIDLIRHPYLKMLEVEGT--RPLPEVFHMVEDRLRGGTR 414

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
             DL +++ + +A                                C T L    +     
Sbjct: 415 FADLATVMEEALAETDVAPGTQDL---------------------CRTLLDLCLSRWERA 453

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               ++++        L     D   + P             + +      +        
Sbjct: 454 STPAALAEAVGFLCAVLLERGGDLWERFPIDAECLFRLMQRVIPALRESELAATAFPQDV 513

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
              I+   +  E V  + +    L +LG LESRLL F  +I+    +   P     +P L
Sbjct: 514 LFTILRETVRAERVPFEADPIGGLQVLGMLESRLLTFRRVIVLDATDDRLPGAPPNDPLL 573

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPT-----IASRWLQR 718
              ++  + L  A +     AH+F         +                    SR+++ 
Sbjct: 574 PDSLRPQVGLPDARRRERITAHNFHRLLAGAEEVNLLWQAGVERSGLLDDKKARSRFVEE 633

Query: 719 LLVLGGTDFFDNLKKRGQCYLDW---TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
           +L           +             R  + T +                 R  S S +
Sbjct: 634 MLWHEERAAGRLFRPGEGPLGTVTCTVRPFESTPRHILKTDAVRDALARFFERPVSPSRL 693

Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEIN 832
              +  P+  Y   + +L       +  D    GTL H  +                   
Sbjct: 694 DAYLTCPFRFYHEHLCRLAPPDEVIEGEDPAAVGTLLHEALNRFYAPWRGIEVTRDRLDP 753

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAK--M 889
            ++++       +  L          +        L      Q     +  +       +
Sbjct: 754 EMLERHFRQSLHESGLADRFPADALAMLETAGPERLRRFLARQPDRTVVLHLEEAFTADV 813

Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
            ++     L G  DR+D    G   + DYKTG 
Sbjct: 814 EVDGRTRRLGGRLDRVDRRGEG-AVVLDYKTGS 845


>gi|302879643|ref|YP_003848207.1| hypothetical protein Galf_2444 [Gallionella capsiferriformans ES-2]
 gi|302582432|gb|ADL56443.1| hypothetical protein Galf_2444 [Gallionella capsiferriformans ES-2]
          Length = 902

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 159/1026 (15%), Positives = 310/1026 (30%), Gaps = 177/1026 (17%)

Query: 49   IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
            + +P   A   L        G  + +LP + +L D  +            +   VS    
Sbjct: 2    VLLPNYHAAGPLAQALSAAAGLPALLLPQMTTLADWAQS-----------IPLAVSVQSD 50

Query: 109  LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
               L  L    R++                    A+   L++ L  ++D +        +
Sbjct: 51   TQRLLTLYQALRDRNW---------------FPDADLWSLSRELLTLMDELTRHHVSLPE 95

Query: 169  LHALKNEKYGMWWLL----AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
                 + +    +      A  F           +   +           +   A+ +  
Sbjct: 96   STEAFSRQLVAAYQAQSGVAMQFEARVVHELWYAMAAHDELDVTAAYQQRLAILAQQVTM 155

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                                             VL   D   P   +             
Sbjct: 156  P------------------------------LFVLQTCDLDAPEMRF------------- 172

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                       LA   + + +   D++ L  +       S  + +     D      + +
Sbjct: 173  -----------LAACRERVRVTVFDLRELLGMDAGCALLSAALQQELHGEDLRSAAQSRV 221

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
                + +       + L  A    +EA +  + +R  L E K   A++  DR +ARR++ 
Sbjct: 222  AGVALTD------RIGLFGAHGMEQEAQAADVQVRRWLLEGKTAIAVVVQDRMVARRLRA 275

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L R  + +    G   +T   S++L   L A+     +  +  L+K P           
Sbjct: 276  LLERARVMVQDETGWTFATLSVSTVLMRWLEAVQGDFYYQDVLDLLKSPFLF-------- 327

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                                      ++  + A Q       H       E    A    
Sbjct: 328  ----------------------AENQVLRKQAAYQFEQLVRRHGVVLHLNEHIAAAEREA 365

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
              ++  +  L        +   + S+S W       L  +    H    +   ++  + L
Sbjct: 366  PELVPALVRLRQAARLLTAR--HASLSGWLSALHQSLDLLG-VIHGWRQDAAGQQLMQLL 422

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
            +    ++         +  EW   +++ +D  T +     S  +       +R   FD +
Sbjct: 423  ALWQEEL--QADTTSCSFSEWRRWLSQQLDLNTYRDLSVDSP-VLFTHLAATRWRCFDAV 479

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL 703
            +L G + G  P       + +  +++ L L  +     Q   D          ++ T   
Sbjct: 480  LLLGCDAGHLPAPVNAGLWFNDAVRTTLGLPLSCVQQDQVRDDLLSLLAMNGTVLATWQA 539

Query: 704  RENNIPTIASRW---LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK---------- 750
              N  P + S +   L+ + +L       N++  G   L   R  D   K          
Sbjct: 540  NCNGEPNLLSPYFEMLRAMHLLAFGHDLMNVELGGLLPLAQVRIQDSDRKGLPRTTKVLH 599

Query: 751  ----------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                      Q   K P+P  P E  P+  S S    L+  PY  +AR +L L+ +   +
Sbjct: 600  TKFLREGCRIQDPAKMPRPVVPPELIPQKISPSGYNSLVACPYQYFARHVLHLNELDDVR 659

Query: 801  KDPDRTDRGTLFHNIITELIKKRI---NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
            +D D+ D GT  H ++     +     +++  E   ++++I D  F       ++   W 
Sbjct: 660  EDLDKRDYGTWVHEVLQRFHAEIPQLGSRDKGEAERVLRRISDEVFANALAHDYLAQAWL 719

Query: 858  HLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG--FVD 914
              +  +  ++L  + +I++         +P ++A+    + L G  DR+D+         
Sbjct: 720  LRWQGLIPAYLHWQLEIEADGWRYHAAEVPFEVAVSG-NLLLRGRLDRVDVSVENADAFA 778

Query: 915  ITDYKTGDNPKKETAQK--LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYKT      +   K    D QL+  A             +      ++ L       
Sbjct: 779  VIDYKTQSIQGLKNKLKSPGEDVQLACYA-----------HVQAAKTAAFVSLDDD---- 823

Query: 973  CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
             +         DEL++ +L  L EI   ++ G     +H    EK     E   L R+ E
Sbjct: 824  TVQAVSPDEEIDELAQLTLARLGEIFAQIREG-AGMPAHGT--EKICAYCEMKGLCRLGE 880

Query: 1033 WREEYD 1038
            W E  D
Sbjct: 881  WEESQD 886


>gi|315090099|gb|EFT62075.1| UvrD/REP helicase [Propionibacterium acnes HL110PA4]
          Length = 1061

 Score =  229 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 119/1004 (11%), Positives = 260/1004 (25%), Gaps = 106/1004 (10%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 49   RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                ++   +  L+                        + A     A ++  +   +  E
Sbjct: 106  ----EQEFRMRELLAA-----------RDISDWPEELRTCAGTAQFASDVRVMAARLRQE 150

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 151  GCDPQDLTEAGTASGVPEWRMLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 211  VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                           +L + +D   +        +         + +S          ++
Sbjct: 264  ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSS 308

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
             +  +   +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 309  RLRRHANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368

Query: 400  RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
              +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 369  DVIATILAAEGIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428

Query: 454  LAKFGFPEKYLSRAKNAL-------ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            LA       +       L         +      +       KS   D  +   +     
Sbjct: 429  LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSGDAITAE 488

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
               +            L   +      +        S               +   ++  
Sbjct: 489  LDTACEVYSVPPSLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWASSLRR 548

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                       + +G       ++  +T + I         +    I  +  +   E   
Sbjct: 549  RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRD 608

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA----EKYIG 682
             + ++     +   FD + + GL EG WP        +     S   L  A    E    
Sbjct: 609  GVSVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWSENLRA 668

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQRLLVLGG 724
            +       ++  RH +   S+         S                    L  L+    
Sbjct: 669  ETRLLLVASSRARHQLLLCSVDSAEEGKRPSGLVAGLPHIEDNADSLSFASLTELVGELR 728

Query: 725  TDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
                D  +  G                    R +        +++  P           S
Sbjct: 729  RVIADESESPGVRTEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQDDMDGEIELS 788

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S + +L+  P   +  R         F+        G+L H I     +     + P+ 
Sbjct: 789  ASHVGELLTCPRRWFMTRRAGASSGSAFRASI-----GSLVHRIC---AENMDQWSLPKA 840

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
               ++         E                    F    +     +    V +   + +
Sbjct: 841  LAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVRVDGTITV 897

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
             S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A + +G    
Sbjct: 898  PSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVVASGGVEA 956

Query: 952  IDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSLK 992
            I    V+    + L+    K + +   + +         +++  
Sbjct: 957  IGPTSVSGAELVHLRIGAGKGQANPKVDYQNGLVDVPWPDEAEA 1000


>gi|88607521|ref|YP_505426.1| hypothetical protein APH_0849 [Anaplasma phagocytophilum HZ]
 gi|88598584|gb|ABD44054.1| conserved hypothetical protein [Anaplasma phagocytophilum HZ]
          Length = 936

 Score =  229 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 151/1041 (14%), Positives = 310/1041 (29%), Gaps = 177/1041 (17%)

Query: 48   TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            T+ VP +   + L+  F +  G +  I   + +  ++V+  +  D+              
Sbjct: 8    TVVVPNRSDAECLQFYFSKQCGIEDNI--EVLAFSEIVKSAYEDDIEARAGA-------- 57

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
             LL   + I  W                            LAK L  ++D I       +
Sbjct: 58   -LLLCMQFIEEWNALRHTDYPA-----------------SLAKELLLMLDEIYLNCTDLD 99

Query: 168  DL-HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
             L  +L+ E    +  L ++FL   +++W                IA +       +  +
Sbjct: 100  RLSTSLEEEDLFGYRCLTSEFLIDFARWWKST------GHSNASAIAQVERF-FSELCLS 152

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
               + +AG   +   +  L S   +     I+LP LD  +P   W T+            
Sbjct: 153  GKKVAVAGIASNRAFSELLRSIFESISESFIILPDLDLEMPENKWKTLE----------- 201

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H QY   KLLD L I RE+V  L               +     D       +   
Sbjct: 202  --MGHYQYRFMKLLDELGIGREEVSILDQRDKNHLVDLAFNFEIPSLSDERYCHIKEQ-- 257

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR---------- 396
                       ++ L+   +E EEA  +    +     +     +               
Sbjct: 258  ----------QNIELVICGSENEEARKVIEIAQRYCCASGNDRDVFCGTEKNANNAVSTN 307

Query: 397  ------------------NLARRVKLELTRFGINIDISAGIP--------LSTTLHSS-- 428
                              +        +         S  +         L  T      
Sbjct: 308  NTASSSALNNNIALSQYASEIAGYTRSIQGACTVFLGSDSLSSRIYSTLSLRDTEEVRCD 367

Query: 429  -------ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                   ++  ++  +    D   + +++KH +   G+ +K    A              
Sbjct: 368  DEHVISTLMLCVIEVVVSEGDAAHLLSMIKHGMVTIGYEDKEAYGAA------------- 414

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
               +   ++ ++ + A               S E +E    +V+ I   +          
Sbjct: 415  ---VCQFETEIIRKHAVSGFEAITHAVYEVGSAESREYWRRVVEAIGPFME--------- 462

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-A 600
                G  S+ +  +  +  ++N+       +     +   + + + F  +       K  
Sbjct: 463  --LDGKHSLGEIIQAHLKSIRNLVGGNSAYVKRDNCDGIFENIEAFFRNLTAYCKGKKIF 520

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                +  I   L++      K  ++    +           + +I+ G NEG +     +
Sbjct: 521  TVRNYKHICKDLLE---CYFKDARNDIFSVGSV------RSEVVIISGFNEGGF-APVRR 570

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
            +  L+  ++  L + T E Y G            + L  TRS+      T A   ++ L 
Sbjct: 571  SSLLNNTIRKKLKIPTDEGYKGIFLSILYNLFHAKRLYITRSVESCGKVTEAPLLIRYLD 630

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-- 778
             L  +    +              +D +     +   +P P LE + + +S    + L  
Sbjct: 631  FLLSSFSNASKSSSDSTVSSVDLNIDKSAYLSKFLC-EPNPKLEVRSQVFSVLTAEALGM 689

Query: 779  -INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
             I++PYA Y+R +L +  +          +      +I    ++   N         +  
Sbjct: 690  LISNPYAFYSRYVLGIYPVKSVNTGNMAKNFAVTVRSI---FLQYLKNMGLGSDYSALID 746

Query: 838  IIDSHFEKE-NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
            I    F       P+I+ +W   F  ++ +F + + + + ++  I V       + S GI
Sbjct: 747  IAKREFATVCKSYPYIEKLWWPRFEAMAENFFQADRERKCNVSAIEVESDFTWDV-SEGI 805

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             +    D +  L+ G   +  YK G  P +   Q                G    I   +
Sbjct: 806  KVISKCDSVSYLRDGSPLVVCYKIGMVPSQVDIQCGF----------ASRGIIDSICVSE 855

Query: 957  V-----ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
                  A+  Y R+  +          +     ++ + + + L   +   Q    PF   
Sbjct: 856  SNEKKDASFAYWRITPES-----VEITEIKDLPDVIKAAKEGLQNFLVKFQEEMIPFYPR 910

Query: 1012 LRLSEKSNIQSEYDHLARVAE 1032
               S+      EY+  +R+ E
Sbjct: 911  EDFSKFV----EYELFSRIRE 927


>gi|291513844|emb|CBK63054.1| RecB family exonuclease [Alistipes shahii WAL 8301]
          Length = 946

 Score =  229 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 134/1060 (12%), Positives = 285/1060 (26%), Gaps = 175/1060 (16%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F  E+   L                  L+   I  P++RA              +    P
Sbjct: 4    FLHEVAEDLYARYG-----------EGLSERAILFPSRRARLFFVDALT-GIAGRPMWQP 51

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN--KLPDIIKDLYPES 134
               ++ D+  E                    R+  +  L  I+      P      + + 
Sbjct: 52   RWVTVDDLTTEISGLRTGD------------RVRLITELYKIYSEYHAEPFDKFYFWGDM 99

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
             L+   +       A  L   I  I+  E     +  L   +                ++
Sbjct: 100  LLTDFDTIDKYRIDAAMLFRNISEIKEIEAD---ISYLTPAQLQ------------ILRF 144

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            W+    E + S      +A+ +       +  +                  +S +    N
Sbjct: 145  WSTLADETDLSEEKRRFLAIWKTLGPVYARFRER-----------------LSELGIAYN 187

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
            G +     D                                  +L  FL    E      
Sbjct: 188  GMVQRAAADRI------RGEGYAFPEARQYVVAGFNALSECEKQLFRFLSTAAETDFYWD 241

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
              S                             +   +  +   ++  + A +   +    
Sbjct: 242  YDSYYKDRPEQEAGMFVRENVV----QFPPRGDVSHDNMERPKELTAVAAVSNAVQCKHA 297

Query: 375  AIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
            A  LR         K++A++  D NL   +   L      ++++ G PL  +L  + +  
Sbjct: 298  AAILRELAARGPLDKRTAVVLTDENLLLPLLYALPPEIGKVNVTMGYPLRASLAYTFVER 357

Query: 433  LLNAIFKL--------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
            L+                      ++ HP        +       A++   +R  + S D
Sbjct: 358  LVELQAHRRTKGAGCTFYHADAVGILAHPYVADSDARE-----TRAMQDEIVRERRISVD 412

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
               L                                    D +    +P   ++      
Sbjct: 413  AAWLGR---------------------------------NDLLRMIFSPAAAWRE----- 434

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                 +SDW    V  +     +   +   + F        S     ++    I+     
Sbjct: 435  -----LSDWLLRVVAAVARTPYEGDDRRQRVEFLAVISEEISKLRNSLDEC-DIELTTEV 488

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP-KNTAKNPF 663
            +  ++ R +    +  + E    + ++G LE+R L+F+ ++L  +N+  +P  + A+  F
Sbjct: 489  YTSLLRRHLQTVRIPYEGEPLEGVQVMGILETRNLDFENVVLLSMNDDNFPGNHMAQASF 548

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMA-NGTRHLI-YTRSLRENNIPTIASRWLQRLLV 721
            +   +++   L T E + G  A+ F       R +     S  ++      SR++ +L  
Sbjct: 549  VPYNLRAAYGLPTPEHHEGVYAYYFYRLVQRARRVWMLYCSHADDKSTGEPSRYIYQLDY 608

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
              G      ++      L  T  ++   K     +            T S +   + +  
Sbjct: 609  ESGF-PVRKVEVGVDVNLAETDPIE-VAKDEGIMQRLGRFTDPESKATLSPTAFFRYVAC 666

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-TPEINHLMKQII- 839
            P   Y   + +L       ++ D    GT+ H  + +L  + + +    E    M +   
Sbjct: 667  PLRFYFHSVARLQADDEIAEEVDAPMFGTILHAAVQKLYARIVGEAHPGETLRAMIRTGE 726

Query: 840  ----------DSHFEKENLPPHIDIIWRHLFHKISHSFLEH----EEKIQSSIEKIFVNI 885
                      +++ +              L   I   +L       +          +  
Sbjct: 727  IAAAVEAAINENYLQDPAATTDDYTGNLLLVKDIVTRYLRGGVMPYDAAHDGFTVTGLEQ 786

Query: 886  P----AKMAIESIGI--HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID----- 934
                          +     G ADRID L  G + + DYKTG    +    + +      
Sbjct: 787  EVAYGFDFTAAGRPLCMKFAGIADRIDALDDGTLRVVDYKTGAPHLEFAGMESLFRGEGK 846

Query: 935  ------PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE--- 985
                   Q  L A  L        +      L+Y+R   +       +D++         
Sbjct: 847  QRLSNILQTLLYAMMLYRTRGVDAEPA----LYYVRAMNRPDYLPTLDDRETGVRGGRYT 902

Query: 986  -LSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
              +E+  + + + +  L +   PF         +    ++
Sbjct: 903  LYAERFEELVRQTLAELYDPSVPF--RQCEDADTCNFCDF 940


>gi|119715744|ref|YP_922709.1| UvrD/REP helicase [Nocardioides sp. JS614]
 gi|119536405|gb|ABL81022.1| UvrD/REP helicase [Nocardioides sp. JS614]
          Length = 1060

 Score =  229 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 137/1059 (12%), Positives = 297/1059 (28%), Gaps = 116/1059 (10%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +     ++ A+++       + D         V     +++A ++LR       G+  
Sbjct: 27   PGTGKTTTLVEAIVDRIESRGAKPD--------EVLALTFSRKAAEQLRDRVTARLGR-- 76

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
                 + +        F   L+  Y+         RLL      ++ R  L D  + +  
Sbjct: 77   ----TMSTTMSSTFHSFAYALIRRYSPAELYEAPLRLLSAPEQDVVLRELLTDHPESVVW 132

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
               L+  +        A+ +  ++     +      L AL   +    ++ A  FL    
Sbjct: 133  PDSLARALGTR---GFAREVHSVLSRAREKGLDGVALQALGEAEGLPEYVAAGLFL---- 185

Query: 193  KYWTERLVELNASSPVGY-QIALMRAEAEHLM-KGTKGPIIIAGSTGSIPATARLMSTVA 250
              +   L    A+      + A + AE      +   G + +     + P    L+  +A
Sbjct: 186  DQYLTNLDSQGATDYADLIRRATIEAETHRDELRARIGAVFVDEYQDTDPGQVALLRALA 245

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                  +V+   D H     +     +      +    +      +  L           
Sbjct: 246  GDGRDLVVV--GDPHQSIYGFRGAEVRGILEFPTAFPRTDGAPADVVALRTTRRFGPRL- 302

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                     +     V  +  LP    +   +  L  +          V +   D ER E
Sbjct: 303  ---------LIASQRVAGRLALPGSIPEEARSAFLAPEAQPNPLGDGRVLVRTFDTERAE 353

Query: 371  AISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDI-SAGIPLSTTL 425
            A  +A  LR +  E      + + L+ + R     ++  L   G+ +++ S  +PL    
Sbjct: 354  AEHLADLLRRAHLEDDVPWDQMAVLVRSGRTSIPPLRRALGAAGVPVEVASDEVPLVRDP 413

Query: 426  HSSILTSLLNAIFK---LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
                L   L A+       D   +  +                       L A    + +
Sbjct: 414  AVLPLLDALRAVVDLDTRPDEGEVEHVAPENGWSLDPARAEGLLLGPLGGLDAGDLRRLA 473

Query: 483  YDIMDLKSLVLDRIATQKNNTHV--------PHWQSRLSEEDKELAVLLVDHILQCITPL 534
              +   +       A     +          P +   L   +   A  L   +L     L
Sbjct: 474  RRLRTREKEQGKAEARTPRTSRDLVRRVVVEPGFLDGLDGPEVVRARALAQLLLDAREAL 533

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                + +       S + W       +        R   +L        +++   +  + 
Sbjct: 534  RVGASAEELLWTLWSRTGWPARLRRSVDLGGGAARRAHRDLDSVCALFDVAARADEQRDH 593

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                         ++ + I  +T+  +  + + + +L    ++ L +  +++  + +  W
Sbjct: 594  VGVRAF----LATLVQQQIPADTLAERGARGAAVRLLTAHRAKGLEWRLVVVAHVQQDGW 649

Query: 655  PKNTAKNPFLSRVMQSDLNLKTA----EKYIGQAAHDFEMANGTR-HLIYTRSLRENNIP 709
            P    ++  L      +  +       E  + +    +      R  L+ T     ++  
Sbjct: 650  PDLRRRSTLLQADRIGEHGVVPPVSTRELLMEERRLFYVACTRARQRLVVTAVASPDDEG 709

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP-------- 761
               SR+L  L V  G +       R         +L  T   P    P            
Sbjct: 710  EQPSRFLDELGV--GVERVVGRPPRPLSLPGLVAELRRTLADPETSEPLREAAARRLARL 767

Query: 762  -------------------------PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                                         QP   S S ++ +   P   +  R       
Sbjct: 768  APEVRIADPSSWWGTRAATRSVEPIRDPGQPVPVSASVLEAVAVCPTQWFLEREAGGSAR 827

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHIDII 855
                      + G L H +   +    +         ++ + +D+ +++ +   P     
Sbjct: 828  -----AHQSANLGELLHALAQRVAAGELEP----AVEVLMEHVDAVWDRLDFRTPWSRAR 878

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGF 912
                       FL+      +  E I    P    +       + ++G+ADR++L   G 
Sbjct: 879  EHDRVRAAIGRFLQWHLA--NPRELIATEAPFTTVVALEGGEQVKISGYADRVELDADGH 936

Query: 913  VDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDC---RKVANLFYIRLKQK 968
            V + D K+G   P     +  +  QL L   A+  G+ + +        A L  + L   
Sbjct: 937  VVVVDLKSGRTKPSNRAVEGHV--QLGLYQYAVDHGALADLAPGAHAGGAELVQLGLTDG 994

Query: 969  FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
             +   +     +       +   + L     LL+    P
Sbjct: 995  GEAAVVQAQDAQPEDGPARDDLRRRLDHAAALLRAETFP 1033


>gi|120602212|ref|YP_966612.1| hypothetical protein Dvul_1165 [Desulfovibrio vulgaris DP4]
 gi|120562441|gb|ABM28185.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4]
          Length = 984

 Score =  229 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 122/933 (13%), Positives = 237/933 (25%), Gaps = 126/933 (13%)

Query: 11  IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG- 69
           +   S F   +        L    R     P       +  P  R  + L        G 
Sbjct: 18  VPWDSDFLEAV--------LQLALRLTRNRP---GDAVLVFPHGRPRRHLIDRLRNAPGV 66

Query: 70  KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129
            K  +LP + ++ ++                  V  + R+  L   +        D+   
Sbjct: 67  PKPCLLPQMYTVQELF---TRIRAEREQRPPQTVGLLDRVGLLLECV-------TDLASP 116

Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
             P           +       L+ +++   ++  + +DL  +   +   +     + L 
Sbjct: 117 GTPLCEALTAGGQRHFFPWGARLSALLEDCFSQGLRPDDLTHM-EGQVAPFAASLLENLG 175

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
              + +T  L+E   S+P       +              +IIAG         RL   +
Sbjct: 176 RIHERYTLALMERGWSTPGFDAFRAVDGLEGTPSCLEGRTVIIAGFAALNGTEERLFEHL 235

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
             H    I L                         + T   H                  
Sbjct: 236 WRHCGADICLHT-----------DAAVARMGQERVHWTCEDH------------------ 266

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                                        + +       +   +     V+  E  +   
Sbjct: 267 --------------------------VRWLTSWRAEAELLHAPRAFKPRVSFCEGYDLHS 300

Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
           +   +   L+ +  E+   +A++  D  L   V   L      ++IS G PL  +    +
Sbjct: 301 QLHELGTLLQNT--EDLSSTAVVLPDTGLLMPVLHHLPT--KAVNISMGYPLVRSTLFRL 356

Query: 430 LTSLLNAIFKL-----NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
           L +L+             +     L++HP  K    E    R    +  V     +    
Sbjct: 357 LETLMRLQETRGSNGQYHWRECIDLIRHPYLKMLEVEGT--RPLPEVFHVVEDRLRGGTR 414

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
             DL +++ + +A                                C T L    +     
Sbjct: 415 FADLATVMEEALAETDVAPGTQDL---------------------CRTLLDLCLSRWERA 453

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               +++D        L     D   + P             + +      +        
Sbjct: 454 STPAALADAVGFLCAVLLERGGDLWERFPIDAECLFRLMQRVIPALRESELAATAFPQDV 513

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
              I+   +  E V  + +    L +LG LESRLL F  +I+    +   P     +P L
Sbjct: 514 LFTILRETVRAERVPFEADPIGGLQVLGMLESRLLTFRRVIVLDATDDRLPGAPPNDPLL 573

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPT-----IASRWLQR 718
              ++  + L  A +     AH+F         +                    SR+++ 
Sbjct: 574 PDSLRPQVGLPDARRRERITAHNFHRLLAGAEEVNLLWQAGVERSGLLDDKKARSRFVEE 633

Query: 719 LLVLGGTDFFDNLKKRGQCYLDW---TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
           +L           +             R  + T +                 R  S S +
Sbjct: 634 MLWHEERAAGRLFRPGEGPLGTVTCTVRPFESTPRHILKTDAVRDALARFFERPVSPSRL 693

Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEIN 832
              +  P+  Y   + +L       +  D    GTL H  +                   
Sbjct: 694 DAYLTCPFRFYHEHLCRLAPPDEVIEGEDPAAVGTLLHEALNRFYAPWRGIEVTRDRLDP 753

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAK--M 889
            ++++       +  L          +        L      Q     +  +       +
Sbjct: 754 EMLERHFRQSLHESGLADRFPADALAMLETAGPERLRRFLARQPDRTVVLHLEEAFTADV 813

Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
            ++     L G  DR+D    G   + DYKTG 
Sbjct: 814 EVDGRTRRLGGRLDRVDRRGEG-AVVLDYKTGS 845


>gi|289425545|ref|ZP_06427322.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|289154523|gb|EFD03211.1| UvrD/REP helicase [Propionibacterium acnes SK187]
          Length = 1058

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 123/998 (12%), Positives = 256/998 (25%), Gaps = 117/998 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 46  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ + 
Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNS 425

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510
           LA       +       L            ++    ++     + + ++       S   
Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485

Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                             +   ++   + +    L +  T   +       S W     +
Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +   + + S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A +
Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +G    I    V+    + L+    I          S
Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 984


>gi|307328514|ref|ZP_07607688.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
 gi|306885782|gb|EFN16794.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
          Length = 1118

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 122/1060 (11%), Positives = 268/1060 (25%), Gaps = 120/1060 (11%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +     ++ A      V     +  +P     + +   +++A  ELR       G  S
Sbjct: 81   PGTGKTTTLVEA------VARRVREGADPE---RLLVLTFSRKAAVELRDRMAARLGGAS 131

Query: 73   TILPIIKSLGDVVEEKFTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
               P   +          A  D+ L  +    +S  ++ + +  L+        +    +
Sbjct: 132  A--PRATTFHSYCYALVRAHQDVDLFVDPLRLLSGPEQDVVVRELLAGQAELAREGRAFV 189

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                      +       A  +  ++            L           W  AA FL  
Sbjct: 190  R---WPDDLRACLTTRGFADEVRAVLARSRELGLGPRALGEFAERTGRPDWSAAAGFLAE 246

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                   + V   A       +   R E    + G    + +     +  A  RL+  +A
Sbjct: 247  YLDVLDAQGVLDYAELVHRAVLLAGRPEVAAELAGRYDAVFVDEYQDTDVAQGRLLGALA 306

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                G  +L   D       +             +   +                +  D+
Sbjct: 307  G--GGRTLLAFGDPDQSIYAFRGADVGGILRFREDFPRADG--------------RPADM 350

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
            + L               +       + +    +  ++     +    V          E
Sbjct: 351  EVLTVSRRSGAVLLAATRRITGRMPLTRLPARAVRAHRELAAVRDGGRVEAYTYPTAGAE 410

Query: 371  AISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTL 425
              ++A  LR +  E     ++ + L+ A       V+  LT  G+ +++     PL    
Sbjct: 411  LDNVADILRRAHLEDGVPWREMAVLVRAGGRSIPGVRRALTSAGVPVEVDGDDIPLRHEP 470

Query: 426  HSSILTSLLNAIFKLNDF-----------MAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
              + L + L A                      TL+  PL      +          E  
Sbjct: 471  AVAPLLTALRAAATAALPDSGGLSAVLGVETALTLLTSPLGGMDAADLRRLGRALREEER 530

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
            +          + L   + +      ++                 A  L   +      L
Sbjct: 531  SAGRAVPRPSDVLLAEALAEPERLAVHDPAY-----------ARGAQRLGPLLRTAREAL 579

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                T + +       + W        Q           +L         ++      E 
Sbjct: 580  ARGGTAEQALWQLWDGTSWPGRLERAAQRGGTAGRNADRDLDAVCALFETAA----RAEE 635

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
             +  +       +I  + I  +T+  ++ +   + ++    ++ L +  +++ G+ EG+W
Sbjct: 636  RTGGRGALNFLEEIDAQDIAADTLSRRMVRPDAVRLMTAHRAKGLEWALVVVAGVQEGLW 695

Query: 655  PKNTAKNPFLSRVMQSDLN----LKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIP 709
            P    +   L             L        +    +  A   +  L+ T     +   
Sbjct: 696  PDLRRRGSLLEADRIGRDGLAEPLPPGALLAEERRLFYVAATRAKERLVVTAVKAASEDG 755

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK-------------- 755
               SR+L  L V           +R         +L  TT  P                 
Sbjct: 756  DQPSRFLTELGV--PPTDVTQRPRRPLSVAALVAELRATTVDPDASEALRDAAARRLARL 813

Query: 756  --------RPKPFPPLEAQPRTYS-FSEIKQLINDPYAVYARRILKL------------- 793
                    RP        +       +  +  + D     A     L             
Sbjct: 814  AALRDEEGRPLVPAAHPHRWWGLHEPTHSEVPLRDRDRPVALSGSALDQLVNTCSLQWFL 873

Query: 794  -DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
               +            G + H ++ + +          +       +      +      
Sbjct: 874  GREVKADAPSTAAQGFGNVVH-VLADEVASGRTPADLAVLMERLDSVWDALAFDAPWKSR 932

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI--GIHLTGFADRIDLLKS 910
                +         FL      +     +       + +E+    + + G  DR++    
Sbjct: 933  QEKEQAR--AALERFLHWHVMERGGRTPVATEHSFDVTLEADVYKVRIRGSMDRVETDGE 990

Query: 911  GFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQI---DCRKVANLFYIRLK 966
            G   + D+KTG     +   +    PQL+    A++ G+   +      +      ++L+
Sbjct: 991  GHAYVVDFKTGKQAVTRGDVEHH--PQLAAYQLAVREGAVDDLFEGGRPEAGGAELVQLR 1048

Query: 967  QKFKIDCITNDKKKYSADELSEKSL--KNLIEIVTLLQNG 1004
            Q        +D  K  A E  +     + L      + + 
Sbjct: 1049 QGAAKKDGGDDVPKVQAQEPPDGEWVGQLLATAAGRVLDE 1088


>gi|238650911|ref|YP_002916767.1| hypothetical protein RPR_05775 [Rickettsia peacockii str. Rustic]
 gi|238625009|gb|ACR47715.1| hypothetical protein RPR_05775 [Rickettsia peacockii str. Rustic]
          Length = 838

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 131/709 (18%), Positives = 259/709 (36%), Gaps = 103/709 (14%)

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
            P  ++    ++  E ++  EE   I+           ++ A++T +  L R     L ++
Sbjct: 204  PASKQISDGISYYEPNDIYEETKQISYI---CSRNKDRRIAIVTNNNKLKRVYCNFLDKY 260

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
               +    G  L  T    +LTS++  +    D   +  L+K+PL               
Sbjct: 261  EDLL----GNDLRLTNIGELLTSIIKILCNNFDLKPLFLLLKNPLINCP--------TVQ 308

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
             LEL+    N+       L  L                     + + +E    L+D +  
Sbjct: 309  QLELMLSNKNRFISSPKYLLQL------------------QFDNADIREYCRNLIDILF- 349

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                          T    +I     LT    + +        P +W +E G  L    +
Sbjct: 350  --------------TDTPHNIQAILTLTKEITEKLL-------PTIWEKEGGAELLEFLT 388

Query: 590  KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
             +          +  ++  I + L+       K   ++++ I    +  L  FD +IL  
Sbjct: 389  NLTAYSKYINSTDKKDFPKIFSFLLSNIKYY-KNTDAASIIIGRPEDLALCEFDLIILPH 447

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
             N   W  +   +P+LS+     LN+   E      +  F +    + ++   + + +  
Sbjct: 448  FNNENWTLSAKAHPWLSKKALQILNIDYDEIAPTLYSDYFNLFLQNKQIVILNAKKYDGK 507

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
             ++ S     L +  G+    +L      Y      +D   K  + K  +   P    P 
Sbjct: 508  LSVPSNLF--LKLEKGSVSPRDLITGSSNY------MDTVVKPRYDKSIEIHSPY--FPT 557

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRI 824
            T S +EI+ LI +PY  YA++IL L    H  ++P  +D G L H ++ E  K    + I
Sbjct: 558  TLSVTEIETLIRNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYDKQYI 617

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            N N  +  + +  I +       LP +    W+      S +F+  + + + + ++I+  
Sbjct: 618  NLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFE 677

Query: 885  IPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
               ++ +      I + G ADRI++ KS  + I DYKTG  P K+  +  + PQL +E+ 
Sbjct: 678  TKGELRLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESL 737

Query: 943  ALKAGSFSQIDCRKVAN----------------------LFYIRLKQKFKIDCITNDKKK 980
             L    F++ +   +                        + Y+++      +   +  + 
Sbjct: 738  MLLENGFTKCNSLSLLCHPQPLLCYSRESRNPVINNNITIAYVKITS---TEPYVHTTEI 794

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
              + E   +    L++++      +  F   L LS+     ++Y HL+R
Sbjct: 795  ALSIETLNRHKAGLVKLLEHYITNKF-FSYDLNLSK----YNDYLHLSR 838



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 44/223 (19%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            +  F +     +++    +              V I +P   +  EL+    +    K 
Sbjct: 3   ANYSFLKSFAEYIIDKLGKD------------TKVQIILPNNFSCLELKKILTDKYKIK- 49

Query: 73  TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
             LPII     ++ +K  +D          +S I+ LL L+ +I  ++            
Sbjct: 50  --LPIIIPFNSLISKKTDSDY---------ISKIEELLILSSIITEYKE----------- 87

Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
                LP++   ++  A+ L  + + +         +  ++      +W     FL+   
Sbjct: 88  -----LPLNKNESLKAAELLRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCF 139

Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
             W E +      +   Y++ L++ E   +  G    +I+AG 
Sbjct: 140 LRWQEEISFTQKQTKAVYKLKLLQEEIIKIKTG-HKQVILAGI 181


>gi|111023338|ref|YP_706310.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
 gi|110822868|gb|ABG98152.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
          Length = 1098

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 141/1044 (13%), Positives = 277/1044 (26%), Gaps = 127/1044 (12%)

Query: 30   LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT-------GKKSTILPIIKSLG 82
            LV+             SV +   +KRA   +R E            G ++T  P+++++ 
Sbjct: 64   LVDVAVDRIAGGEDPESVLVLTQSKRAAGRVREEVTAALIGHDEHHGPRATREPLVRTVH 123

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                           N  P      RL+  A    + R  L   I D     P       
Sbjct: 124  SYAFAVLRLQAAAHGNPPP------RLITGAEQDAVLREMLHGDIADGGEMWPER-LRPA 176

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                  A  L D++          EDL  L        W+ A  F               
Sbjct: 177  LALGGFAVELRDLMLRSSERGLGPEDLIRLGQRHSRPEWVAAGMFAARYEH--------- 227

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                        +  EA            + G+  +  AT   +          +++   
Sbjct: 228  -----GMLLRGAVGVEAPEATAPALDAAELIGAALTAFATDPDLLRTERARVRHLLVDDA 282

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
                P A        +   T+          Y              D      V   +  
Sbjct: 283  QHLDPQAAELVRLLGTGTRTTVVAGDPDQSIYGFRGADPTFLADLADKGDPRQVLLPVNF 342

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            RS     +     TS +       +  P      + V ++      +EA  +A  LR + 
Sbjct: 343  RSSAEVATTAARITSRLPGHLPHRSWSPAQDGGRTSVRVLS--TVAKEAALVADTLRRAH 400

Query: 383  DENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAI 437
              +     + + ++ +       ++  L   G+ +  +A   PL+     S L  +L A+
Sbjct: 401  LLDGVPWSEMAVIVRSVPRALAPLRRALLGAGVPVTTAASELPLARQHGVSGLMLVLRAL 460

Query: 438  -FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
              +         L+  P+          +       L             D  S  L R+
Sbjct: 461  SGQEFTGEDALALLAGPVGG--------AEPVALRRLRRGLRRAELASGGDRDSAELLRL 512

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                         ++L++ +      ++  + +   PL   +  ++        +   + 
Sbjct: 513  VLVGETDSTRRVTAKLTDVEAASLNRVLSVLRKAKVPLDRGRGIEDVLWAAWQATGLERR 572

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                         +   +L         ++ +   +      +A    ++D +T      
Sbjct: 573  WSAVSARGGPIGAQADRDLDAVVALFDAAASYVDRLP-----RAQLAGFVDYLTGQAIPT 627

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---- 672
            T          + +L    +    +D + + G+ EG+WP   A+   L      DL    
Sbjct: 628  TRNVSAVPVDAVSVLSAHSAAGREWDVVAVAGVQEGLWPSLRARGSLLGTEALIDLTAGV 687

Query: 673  --NLKTAEKYIGQAA--------HDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLL 720
                +TA  ++ + A              +  R  +   ++     +   + SR++  LL
Sbjct: 688  SDGSETAADWMSRTAPLLAEERRLFLVACSRARRSLLVTAVDSASGDADLVHSRFVDELL 747

Query: 721  VLGGTDFF-------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR----- 768
                           ++   R         +L      P      P     A  +     
Sbjct: 748  SGDQDSDVVEAVVQAEDPATRVLALPALVAELRSVVCDPDVAESDPARQERAARQLARLA 807

Query: 769  --------------------------------TYSFSEIKQLINDPYAVYARRILKLDFI 796
                                            + S S I  L   P      R       
Sbjct: 808  DAGVRGAHPDQWYGTAEPSTGVALWNEEDGPVSLSPSTIDLLNTCPLRWLLERHGGT--- 864

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
                 D      GTL H     L++    +  P+      +      +  +       + 
Sbjct: 865  ---DGDNTHAIAGTLVH----TLVQALAGRIPPDQVARALENAWDSIDLGSQWYSRRELD 917

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFADRIDLLKSG 911
            R     +  +F       +S + ++ V +     +E        I L G  DR++    G
Sbjct: 918  RTR--DMLATFTAWLGNTRSELTEVGVEVAVDGVLEPREEGSPTIRLRGRIDRLERDAEG 975

Query: 912  FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
               I D KT  +P  +   +    QL+    A   G+       K      + + +  + 
Sbjct: 976  RPVIVDVKTARSPVTKDDAQQHA-QLAAYQVAAAVGAIDGEPASKPGGARLVFVAKPHRK 1034

Query: 972  DCITNDKKKYSADELSEKSLKNLI 995
            +  T   +   +DE  E  L  + 
Sbjct: 1035 EGATQRVQAPLSDEDLETWLAVIH 1058


>gi|314983239|gb|EFT27331.1| UvrD/REP helicase [Propionibacterium acnes HL110PA3]
          Length = 1058

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 119/1004 (11%), Positives = 260/1004 (25%), Gaps = 106/1004 (10%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 46  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 103 ----EQEFRMRELLAA-----------RDISDWPEELRTCAGTAQFASDVRVMAARLRQE 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 148 GCDPQDLTEAGTASGVPEWRMLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSS 305

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +  +   +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 306 RLRRHANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365

Query: 400 RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 366 DVIATILAAEGIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 425

Query: 454 LAKFGFPEKYLSRAKNAL-------ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
           LA       +       L         +      +       KS   D  +   +     
Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSGDAITAE 485

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              +            L   +      +        S               +   ++  
Sbjct: 486 LDTACEVYSVPPSLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWASSLRR 545

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                      + +G       ++  +T + I         +    I  +  +   E   
Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRD 605

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA----EKYIG 682
            + ++     +   FD + + GL EG WP        +     S   L  A    E    
Sbjct: 606 GVSVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWSENLRA 665

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQRLLVLGG 724
           +       ++  RH +   S+         S                    L  L+    
Sbjct: 666 ETRLLLVASSRARHQLLLCSVDSAEEGKRPSGLVAGLPHIEDNADSLSFASLTELVGELR 725

Query: 725 TDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               D  +  G                    R +        +++  P           S
Sbjct: 726 RVIADESESPGVRTEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQDDMDGEIELS 785

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            S + +L+  P   +  R         F+        G+L H I     +     + P+ 
Sbjct: 786 ASHVGELLTCPRRWFMTRRAGASSGSAFRASI-----GSLVHRIC---AENMDQWSLPKA 837

Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
              ++         E                    F    +     +    V +   + +
Sbjct: 838 LAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVRVDGTITV 894

Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
            S    + G  DR++    G   + D KTG +   +  ++    Q+ +  A + +G    
Sbjct: 895 PSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVVASGGVEA 953

Query: 952 IDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSLK 992
           I    V+    + L+    K + +   + +         +++  
Sbjct: 954 IGPTSVSGAELVHLRIGAGKGQANPKVDYQNGLVDVPWPDEAEA 997


>gi|296132524|ref|YP_003639771.1| ATP-dependent nuclease subunit B [Thermincola sp. JR]
 gi|296031102|gb|ADG81870.1| ATP-dependent nuclease subunit B [Thermincola potens JR]
          Length = 1154

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 120/1029 (11%), Positives = 268/1029 (26%), Gaps = 146/1029 (14%)

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
                  G    I   + S   +           +     P+  + + + L RL+   R +
Sbjct: 50   ALAHNYGLGGIIRAQVLSFRRLAWRVLQETGGAAR---VPIGELGKRMVLRRLLDHHRGE 106

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN--EKYGMW 180
            L    +              A+    A  LA  I  ++       DL       ++    
Sbjct: 107  LRVFARS-------------ADRPGFADALARSIGEMKIYRVGPGDLALAAEKTDETPGL 153

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
                   L +  + +   L      +     + L+  + +         + + G TG  P
Sbjct: 154  LNAKLQDLALIYREFDAFLA--GCYTDPDDYLTLLAEKLDGSSTLEGAEVWVDGFTGFTP 211

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                ++  +        V   L+             +         T+ T       ++ 
Sbjct: 212  QEHYVIEKILGKAERVHVTLCLEP-------KDTGRELQEQDLFYPTWET-----FREIT 259

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
            D        ++    +   +  R                                   + 
Sbjct: 260  DRAQKTGVKIEPPVLLDAAIPFRFQNSDSL--------AHLERCYFRHPTETAGAGEGIE 311

Query: 361  LIEADNEREEAISIAIAL----RMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
            L  A N R E  ++A  +    R      +    L+         +      + I   + 
Sbjct: 312  LAAAVNRRAEVEAVARKIVYLCREQNYRWRDIGILLRDLGPYRDLIADVFQDYDIPFFMD 371

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
                +       ++ S +  + K   +  +   +K  L      +  L         +  
Sbjct: 372  CKRNMLHHPLVELIRSAVETVIKDWSYEPLFRCLKTDLLPVSREDTDLLENYVLAHGIRG 431

Query: 477  RGNKNSYDIMDLKSLVLDRIAT-QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                 S     L+   L   A             +R   +      L  +++ Q    + 
Sbjct: 432  YARWASGPWHYLRQFTLGEDAEPAPEEKAELAAVNRGRLQVVSSLGLFTENLRQA-GNIA 490

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                   +   +L + +         ++    E  +       +    ++SLF +++E  
Sbjct: 491  EITAAVYTLLEDLHVPEILHKWAQEAESAGRLEQAR----EHLQVWGGITSLFDEMVEAI 546

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                 +  +++ ++   ++   +         + +     +R  N   L + G NEG  P
Sbjct: 547  GEESVSLEDYLAVLEAGLESLRLGLIPPGLDQVVVGTMDRTRSANTRALFILGANEGALP 606

Query: 656  KNTAKNPFLSRVMQSDLNLKT-------AEKYIGQAAHDFEMANGTRH-LIYTRSLREN- 706
               A +   +   +  L             K   +    +         L  +  L +  
Sbjct: 607  ARQADDGIFNDSERERLAEAGVVLAAGGRRKAFDEQYLIYMALTRASEKLWLSFPLADEE 666

Query: 707  NIPTIASRWLQRLLVL-------------------GGTDFFDNLKKRGQCYLDWTRKLDY 747
                  S  ++R+  L                   GG ++F + ++         R+L  
Sbjct: 667  GRALTPSPVIRRIKELFPGLNETFYQVDKLPDGTAGGLEYFIHPQRVLADLAVQLRELKA 726

Query: 748  TTKQPHYKR---------------------------------PKPFPPLEAQPRTYSFSE 774
                                                      P+    L  QP   S S 
Sbjct: 727  GRAIDPVWWDVYNWFNGSADGRGRLAKVLRGVFHTNTEKRISPEVSRALYGQPLKASVSR 786

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRI 824
            I++    P+A +A   L+L             D G  FH  +               +  
Sbjct: 787  IEKFKACPFAHFAGYGLRLKER--LLFRLAAPDMGEFFHAALKLFNDRLAERGVDWAQLS 844

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHSFLE--HEEKIQSSIEKI 881
             ++  ++   + + +    + E L       +      +  +       E   +S    +
Sbjct: 845  REDCGDLATQVVEELAPQLQSEILLSTARYRYLTGKLKRSVNRAAAVLAEHARRSIFRPV 904

Query: 882  FVNIPA---------KMAIESIG-IHLTGFADRIDLLKSGF---VDITDYKTGDNP-KKE 927
             V +            + +   G +HL G  DR+D+ ++     + + DYK+ DN     
Sbjct: 905  GVELSFGAGGELPPVTVELAGGGTLHLVGRIDRLDVARTEEADYLRVIDYKSSDNRLSLA 964

Query: 928  TAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
                 +  QL      AL   +           + Y  +K+      +       S D++
Sbjct: 965  EIYYGLRLQLLTYLHVALTHSARLVGRPGLPGAVLYFTVKE-----PVIRSAGPMSPDQV 1019

Query: 987  SEKSLKNLI 995
             ++ +K L 
Sbjct: 1020 EKEIMKKLK 1028


>gi|332291755|ref|YP_004430364.1| hypothetical protein Krodi_1112 [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169841|gb|AEE19096.1| hypothetical protein Krodi_1112 [Krokinobacter diaphorus 4H-3-7-5]
          Length = 898

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 127/1006 (12%), Positives = 299/1006 (29%), Gaps = 176/1006 (17%)

Query: 50   YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
             +P++RA   L  +        ++  P + S+ + +          + +L         +
Sbjct: 23   ILPSRRAGNTLTKKIASR-AITTSFAPKVFSIEEFISHVTGLKSASNIDL---------I 72

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
              L        +K                          A+++    + I+       D+
Sbjct: 73   FILFESYKEVVSKE--------------KLADFQTFCGWAQSILSDFNEIDRFLLNQSDV 118

Query: 170  HAL--KNEKYGMWWLLA--------ADF---LKIASKYWTERLVELNASSPVGYQIALMR 216
                   ++    W  +         DF   L      +  + ++  A          + 
Sbjct: 119  FNHLKDIKELSDHWSSSKNELVLNYIDFWNSLFDIYTVFCSKSLDKGAVHQGYVYRQAVE 178

Query: 217  AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                +                           + + PN   V  G         +N +  
Sbjct: 179  TIEHY---------------------------IHSSPNVRHVFIG---------FNALNT 202

Query: 277  KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
                                 +L+  L  +           + +       +       +
Sbjct: 203  AEQ------------------QLIQALLSEGNAEIYWDTEKSFLNNPFHETNSFVKNYKS 244

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                 +    N   +      ++A      +  +A ++   L     +    +A++  + 
Sbjct: 245  KWSYYSSNPFNWTFDNYSSHKNIATYACSQDILQAKTLGTILSKISSQELSNTAIVLGEE 304

Query: 397  NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA----IFKLNDFMAIATLVKH 452
            +L   V   L R    ++I+ G+PLS T  +S    L+            F  +  ++++
Sbjct: 305  SLLLPVLNALPRTIQKVNITMGLPLSKTPTASFFDQLITLKKNPHKNGYYFKDVLNILRN 364

Query: 453  PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
            PL+      +        LE   +  N     +  L  L         N      +++  
Sbjct: 365  PLSVSLLGSQ-----TEYLEHEIITNNLIFISVPRLAELS----GDSANTVFNLLFKTWN 415

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
                  +   +       I  L                                D     
Sbjct: 416  ENPKDAVINCIR-----IIEALRELF----------------------------DTGNNT 442

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
              L +        +   ++++    IK +   +I     ++  ET+  + +    L I+G
Sbjct: 443  LQLEYIYGFYVAFNKLKQLMDAQDHIK-DIPTFIHFYREILSSETIDLRGDPEQGLQIMG 501

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYIGQAAHDFEMA 691
             LESR+L++  +I+  +NEG+ P   ++N ++   ++   NL T  EK    A H + + 
Sbjct: 502  VLESRVLDYKHVIITSVNEGILPSGKSQNSYIPYDLKKLYNLPTYSEKDAVYAYHFYHLL 561

Query: 692  NGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            +    +    +        +  SR+++++   G  +   ++            K++    
Sbjct: 562  HRACTVDLLYTTHSTGLGSSEKSRFIRQIEEEGIHNIKKHVVTPSTI------KIEERLP 615

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                             +  S S +   + DP   Y R +L ++     ++       GT
Sbjct: 616  HIPKDTAIIDSLKNLFKKGISPSALTTYLRDPIVFYERYVLGINSSNEVEETVAANTMGT 675

Query: 811  LFHNIITELIKKRINKNT-----PEINHLMKQIIDSHF----EKENLPPHIDIIWRHLFH 861
            + HN + EL K  + +        E+  +++  + + F       ++    + I   +  
Sbjct: 676  IVHNTLEELYKPHVEQQLTVTIIEELLTMIEVEVRNQFKLVYGLNHITEGKNKIVYAIVT 735

Query: 862  KISHSFLEHEEKIQSSIEKI---FVNIPAK-MAIESIGIHLTGFADRIDLLKSGFVDITD 917
            +   ++L+ E+ +    + +    V    + + + +  I L G  D ++   +G V+I D
Sbjct: 736  RYVENYLKREKGLLKKGDIVIIKSVEDDLRNIQL-TEDIFLRGKVDLVEQR-NGNVNIVD 793

Query: 918  YKTGDNPKKETAQKLI------------DPQLSLEAAALKAGSFSQIDCRKVANLFYIRL 965
            YKTG   +K+                    Q+ + A  L            V  + +  L
Sbjct: 794  YKTGKVAQKDLNLSAFNDLLLPEGKFEKAFQVLMYAYMLSKKKPLDF-PVSVGIISFKNL 852

Query: 966  KQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
            +  +       +++    ++   +    L  ++  + N E PF   
Sbjct: 853  QSGYLPFRYNKNEQVT--EDTLLEFEVVLKSLIAEILNPEIPFAQR 896


>gi|302524414|ref|ZP_07276756.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
 gi|302433309|gb|EFL05125.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
          Length = 1057

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 132/1064 (12%), Positives = 268/1064 (25%), Gaps = 155/1064 (14%)

Query: 36   YDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS---------TILPIIKSLGDVVE 86
             +  +P     V +   ++RA   LR++                     P+++++     
Sbjct: 51   AEGADPES---VLLLTTSRRAADALRADLTRRLTSDPDQESPLPRTVSEPLVRTVHSYAF 107

Query: 87   EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
                 +        P      RLL  A   ++ R  L   +++     P           
Sbjct: 108  SLLRLEARAEELPPP------RLLAGAEQDVVVRELLEGDLEEGATSWPEQ-LRPALTVP 160

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A+ L D++          EDL  L + +    W+ A  F     +    +    NA  
Sbjct: 161  GFAEELRDLLMRAAERGLGPEDLTELGHRQDREEWVAAGQFWAQYEEVTQLQGAGGNALG 220

Query: 207  PV-------------GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
                                    E     +G    + +  +    P   +L+ T+ +  
Sbjct: 221  LPAAPALDAAELVTSALLALEDDEELRERERGRVRHLFVDDAHHLDPLQVQLIRTIGHTA 280

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
                 +   D       +                          KL    D   +    L
Sbjct: 281  E--EFVVAGDPDQSVFSFRGADP---------------------KLFADSDNDGDRTVML 317

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
                     R     ++ +    + +         +    K    V +        EA  
Sbjct: 318  TTSH-----RLAPTVRAAVAKLGATLPGASPHRKLVTPPGKRGGKVRVRLMPTPAAEASW 372

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG-----IPLSTTLHSS 428
            IA  LR +   +    + +        R  L L R      +  G     +PL+      
Sbjct: 373  IADQLRRAHLVDGVPWSEMAVLVRSPARTFLVLQRALRAAGVPIGSATEELPLAKHSAVR 432

Query: 429  ILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
             L ++L    +    D      L+   L           R       +A  G ++S    
Sbjct: 433  PLLAVLRIAAEPELLDVDIAEMLLSSSLGGADPLALRRLRRGLRRLELAGGGQRSS---- 488

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
                                     L++ +      + + +      +   +  +     
Sbjct: 489  ---------DELLVEALRGGDILVGLADNEALPVRRVGNLLSITHQAVSRGEGVEQVLWE 539

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                S   +  +  +        +   +L         +  ++  +   S     A    
Sbjct: 540  LWQASGLQERLLRLVDRGGSLGAQADRDLDAVVALFDSAGRYADRLPKASV----AAFAD 595

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             + ++ I G+T+ P       + +L    S    +  + + G+ EG WP    +   L  
Sbjct: 596  YLSSQNIAGDTLAPAAIPGEGVSLLTAHASAGREWTVVAVAGVQEGAWPDLRLRGSLLGV 655

Query: 667  VMQSDLNLKTAEKY---------IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
                DL     E             +    +  A+  R  +   ++   +     SR+L 
Sbjct: 656  ERLVDLLSGVDEHDKVSAIAPILAEERRLFYLAASRARRTLLVTAVAGEDE--QPSRFLD 713

Query: 718  RLLVLGGTDFFDN----LKKRGQCYLDWTRKLDYTTKQP--------------------- 752
             L   G  D   +       R     +   +L                            
Sbjct: 714  DLEENGADDGMLDSRMKPPGRSLVLAELVGELREVVCDDKADPERRKRAAKQLARLAAAG 773

Query: 753  ------------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                             +            S S ++ L+  P      R    D      
Sbjct: 774  VPGAHPDTWYGLPEASTEDPVHGPGDLMRISPSTVEILVKCPLRWLIERHGGSDPAQ--- 830

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
                    GTL H     L +     +T E             +            R   
Sbjct: 831  ---LAAVTGTLVHG----LAQAIAGGSTEEQIQAALDEAWVRVDAGAPW--FSRRERSRV 881

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG----IHLTGFADRIDLLKSGFVDIT 916
             ++  +F+   EK +  + +  V    ++ +        + L G  DR+++ K G   I 
Sbjct: 882  EQMLRNFVSWLEKSRQELIEAGVEQDIEVELPMGDEEVRVLLRGRVDRVEMDKDGRPVIV 941

Query: 917  DYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
            D KTG  P     A+K   PQL+    A+  G+              + + +       T
Sbjct: 942  DIKTGKVPVSGADAEKH--PQLAAYQLAVLLGAVE--GKNTPGGAKLVYVAKGNNKTGAT 997

Query: 976  NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
               +    ++   + L+ +          +  + +H        
Sbjct: 998  QRDQPPMDEDNGREWLELVRSAAAAAVGPD--YQAHENADCDRC 1039


>gi|152981969|ref|YP_001352314.1| hypothetical protein mma_0624 [Janthinobacterium sp. Marseille]
 gi|151282046|gb|ABR90456.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 892

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 149/1030 (14%), Positives = 284/1030 (27%), Gaps = 152/1030 (14%)

Query: 11   IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK 70
            I PS+ F+ +   ALL   L+ + R   +    L+S+ + V T   IQ L+S      G 
Sbjct: 8    IPPSAAFWDDAARALLQSDLLADTRQSAV--RDLSSLRVVVSTFAHIQLLKSALGRQLGG 65

Query: 71   KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
             + I P I SL + +       LL         +  +RL+ L              ++  
Sbjct: 66   -AFIPPTITSLSEYIR------LLPPQAGTTAAAPSERLMSLY-----------ADLRQH 107

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                 L       + + LA+ L  + D +       E   +                   
Sbjct: 108  AWLKKLFSARRNTDLLPLAEILLTLSDELTQAML-PELKVSPDVAD-------------- 152

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                W   L +L+  +                 +      I+                  
Sbjct: 153  --ARWQAALEQLSPVARNLLSDETQLVWTIWKSQLDASDAIV------------------ 192

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                          H    +     +    +   +   +   + +               
Sbjct: 193  --------------HRFAQMMRIAAQAQLPLFWISPVAADALEQAFLDAYQQQRPVVAIT 238

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                              +       +                     ++L  A N   E
Sbjct: 239  LDWHA-------------QYINTTYAAAWPEMLDDVVPADLPLATPPGLSLYAAHNLEAE 285

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A + A  +   L + K   A++  DR +ARR++  L R  + +    G  LSTT  ++ L
Sbjct: 286  AKAGAQTIMDWLQQGKTNIAIVAQDRVVARRIRALLERAQVIVADETGWKLSTTRAAAAL 345

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             S L  +    + +A+   +K P        K      + L                   
Sbjct: 346  ASWLELVAARAETIALLDFLKSPFVFANTDNKADLVMASEL------------------- 386

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                              +        EL    +  I      +              ++
Sbjct: 387  ----------------ALRRANVLGGWELVGDALTVIPAAQNMVKLLAQQATGFSKGKTL 430

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW-IDII 609
             DW   +   L  +          L  +  G  +  L   I +  + +            
Sbjct: 431  CDWITASQQTLDALG-----MRGALQADGAGAQVLQLLQDIEQDCTAVGHVFSFAEWRAF 485

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
              L    T   ++ +   + +L    +RL +FD ++L G +    P    +  F + V++
Sbjct: 486  LNLQLEATAYVQLNRDRRVVMLPLNGARLRSFDAVLLVGADAEHLPSQPTETLFFANVVR 545

Query: 670  SDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
             +L L T E    Q   D          ++ +    +N  P   S W++RL +       
Sbjct: 546  RELGLATRESRQRQQLRDVTELLAANEQVLMSWQAHKNGEPNPVSPWIERLELSLARAGL 605

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
              +                         P P      +P   S S    L+  PY  +A 
Sbjct: 606  PKI------ARHHVGIAPRHLTPVPLTMPAPHAA-ALRPHKLSASGYNSLVACPYQFFAT 658

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
            R+L L  +      P++ D G   H I+     +           L+++I D  F     
Sbjct: 659  RMLGLSGLDELSDMPEKRDYGDWLHQILAIFHTRLHEVTLAGRATLLREISDQVFGLALD 718

Query: 849  PPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAK--MAIESIGIHLTGFADRI 905
                 + +   + K   ++LE   + ++     +      +  +  +   I L G  DR+
Sbjct: 719  KSAAALGYYARWQKAMPAYLEWLAEREAQGWHFVLGEEKFEKILRWDDGEIILHGRVDRM 778

Query: 906  DLLKSGFVDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
            D   +G   + DYK T  +  ++  ++  D QL              +    ++N  YI 
Sbjct: 779  DENATGERAVLDYKSTNQSALRDKLKQGEDHQLPFYGL---------LSDVPLSNALYIP 829

Query: 965  LKQKFKIDCITNDKKKYSADELSE-KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
            L+               +  +    +   ++  I                  E      +
Sbjct: 830  LEASKDKIKEVESPDYDNWQQSLSVQIASSMRAIAHDAPMPATG-------PESVCQYCD 882

Query: 1024 YDHLARVAEW 1033
               L R   W
Sbjct: 883  VRGLCRKGAW 892


>gi|288921365|ref|ZP_06415645.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288347217|gb|EFC81514.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 1148

 Score =  227 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 131/1021 (12%), Positives = 259/1021 (25%), Gaps = 129/1021 (12%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE            AS+ +   ++RA + LR       G  +   P   +        
Sbjct: 35   TLVEAVARRVEAGADPASLLVLTFSRRAARHLRERLAVRLGAGAVG-PAAWTFHAWCLAL 93

Query: 89   FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
                   +       S   RLL         R+ L +  ++L   +              
Sbjct: 94   LRVYGADTA------SGGPRLLSGPEQDARLRD-LLEGSRELGRPAWPDALAGALGTRGF 146

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
            A+ +  ++            L  +        W   A+F                A    
Sbjct: 147  AEEVRMLMARAREVGVDPPALARIARRVGRADWKAVAEFYGDYLDALGAEGAIDYADLVH 206

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                   +      ++     + +     + PA  RL++ VA      +V    D     
Sbjct: 207  SAANLTAQQPVLASLRQRYQAVFVDEYQDTDPAQERLLAAVAGGGGDLVVF--GDPDQAI 264

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +     +      +               +  L   R         S  +  R     
Sbjct: 265  YAFRGAQVRGLLDFPARFPSRD----GSPAPVTALRRCRRMAPAPLAASRRVAARLPSAG 320

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK- 387
                             +    +       V++        EA ++A  LR    EN   
Sbjct: 321  LPVR-------YVRAHRDLVPADSAAGPGQVSVRTYPTAGAEAEAVADLLRREHLENGVG 373

Query: 388  --KSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKL---N 441
                A++         ++  LT  G+ + +  G  P++    + +L + L          
Sbjct: 374  WADMAVLVRSTAGLGVLRRVLTASGVPVSVGGGELPVAREPAAELLLTALRCADDPSRHL 433

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
                   L+  PL         L      L  +      +      L        A  + 
Sbjct: 434  TPETARALLTSPLGG--ADPAGLRALGRELRALDAATTVSPAQDDALARDAAADDAPAQE 491

Query: 502  NTHVPHWQSRLS-------------------------------EEDKELAVLLVDHILQC 530
            +   P      +                               +E       L   +   
Sbjct: 492  DVPSPDGGDEHAGAARMPGTPASSSELLRAAVADPQRMLLMVPDELAAPVHRLGQLLRTV 551

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
               L      +++     S S W                    +L   +    L     +
Sbjct: 552  RAELRRGGAPEDALWTLWSASGWGPRLERASAAGGAAGRSADRDL---DAVVALFDAVER 608

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            + E        A    ++  + I  +T + +  + +T+ +L    S+ L +  +++ G+ 
Sbjct: 609  LGERRGPGFGVASVVSELTHQQIAPDT-ETRAGRPATVRLLTAHRSKGLEWQVVVVCGVQ 667

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNL--------KTAEKYIGQAAHDFEMAN--GTRHLIYT 700
            +GVWP    ++  L        +         +T ++ +      F +A     R L+ T
Sbjct: 668  DGVWPDLRQRHSLLGAEQLDAPHRGGGGVRPPRTRDELLADERRLFYVALTRARRRLVVT 727

Query: 701  RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR---- 756
                 ++     SR+L  L V        +   R    +     L   T  P        
Sbjct: 728  AVDGADDDGEQPSRFLDELGVQVEK--VRSRSVRPLTLVGLVAALRRLTVDPDASAAMRS 785

Query: 757  ---------------------PKPFPPLE----------------AQPRTYSFSEIKQLI 779
                                 P   P                     P   S S +  L 
Sbjct: 786  AAAVRLAALAAARDGAGRTLVPAAHPNRWWGLVDVTSSSVPVVAPDGPIALSGSSLSGLA 845

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                  +     +        +       G + H +  E+   R       ++  +  ++
Sbjct: 846  TCGLRWFLEHEAQAAEPASAAQG-----FGKVVHALADEVSSGRTPARMDALDARL-DLV 899

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
                E ++              +    FL+     +  +    V     + +    + L 
Sbjct: 900  WRQLEFDSRWRSEQERSAAR--EALRRFLDWHAARRREVVASEVRFACDIEVAGRVVRLR 957

Query: 900  GFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
            GF DR++L   G V + D+KTG   P +   Q     QL     A++ G+  ++     A
Sbjct: 958  GFIDRVELDDDGRVHVVDFKTGRAAPSRRDLQTHA--QLGSYQLAVREGALDRVLDEAAA 1015

Query: 959  N 959
             
Sbjct: 1016 G 1016


>gi|332882565|ref|ZP_08450177.1| hypothetical protein HMPREF9074_05984 [Capnocytophaga sp. oral taxon
            329 str. F0087]
 gi|332679365|gb|EGJ52350.1| hypothetical protein HMPREF9074_05984 [Capnocytophaga sp. oral taxon
            329 str. F0087]
          Length = 921

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 152/1044 (14%), Positives = 300/1044 (28%), Gaps = 180/1044 (17%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
            P+ +E+I  +L              P  +  +      KR    L+  F E     +TI 
Sbjct: 2    PYLKEVIADVLENY-----------PDKIERLVFVTTGKRPALFLKKYFAEQVKH-ATIA 49

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
            P    + D+                 P+S +  L E          +      D + E  
Sbjct: 50   PEFIGIADLFTRISGVQ---------PISTLPLLFEFYDCYTKVHQEQHKDTPDNFEE-- 98

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDL-HALKNEKYGMWW----------LLA 184
                      +   +        I+      E +   +   K    W             
Sbjct: 99   ---------FLSWGQTALKDFSEIDQYLVNPEKIFPYIHALKEVEHWSGMDERTEMQEKY 149

Query: 185  ADF---LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              F   L        +RL EL            +    E+L   T    I  G       
Sbjct: 150  LAFWRRLGDYYFALNKRLEELGKGYGGYIAKKAVEKLPEYLQTHTDTIHIFVGFNALSEG 209

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
              +++ ++     G  +    D +      +                     Y L K L 
Sbjct: 210  EQKVIQSIL-IDIGGEIYWDGDTYFLKNQTHEAG------------------YFLRKYLK 250

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                                      + +  P         +   +             L
Sbjct: 251  NWRY--------------------YNTLNHTPKFIGSHYEEEKEFH-------------L 277

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
                    +A S+A  L+       +K+ALI AD NL   +   +   G  ++I+ G PL
Sbjct: 278  TGVPKNVNQAHSVAALLKELPSAELEKTALIIADENLLIPMLQSVQT-GTAVNITMGYPL 336

Query: 422  STTLHSSILTSLLNAIFKL-NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
              T  + + T+           +  +  L+  P        +          +  +    
Sbjct: 337  QQTPLNDLFTTYFRLHLSKSFYYKDVLNLLSQPFLHSLLSAEA---------VTTIATYI 387

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
               ++  L       +     +            +DK     L+D+ ++ I  L +    
Sbjct: 388  KENNLTYLSR--EKLLENTPKDQQEILNLLFPKGKDKAFITTLIDNAIKLIYQLKSTLDP 445

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
            +N+                          + +    +      L +  S +++       
Sbjct: 446  ENA--------------------------QHVLIQEYAYRFYELFNQLS-LLQKRYGHID 478

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            +          ++   T+  + E    L ++G LESR L+F+ +I+  +NEGV P   + 
Sbjct: 479  SVKTLYHFYLDVLQKSTLNFRGEPLEGLQVMGVLESRSLDFENVIITSVNEGVLPLGKSD 538

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENN-IPTIASRWLQR 718
            N  +   ++ +LNL T  +     +H+F       +          N+      SR++ +
Sbjct: 539  NSLIPYDVKCELNLPTYRERDAVYSHNFYHILQRAKKAYLFYDTEMNSLKSREKSRFILQ 598

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            LL           + +       T+      K P           E   +  S S +   
Sbjct: 599  LLTEKVPTHKVTHQIKAPEVYATTQSPLSIEKTPEVM----ARLREMAEKGLSPSALTTY 654

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI-------NKNTPEI 831
            I +P   Y + +L++      ++  +    G + H  + +L +           ++  E+
Sbjct: 655  IRNPLTFYEQYVLQIHEEREVEETVEARTFGEIVHGTLEDLYEIPRSKNKILTEEDIKEM 714

Query: 832  NHLMKQIIDSHFEKE----NLPPHIDIIWRHLFHKISHSFLEH---EEKIQSSIEKIFVN 884
             + +K  I+  FEKE    +     + +  ++  K   SFL     E K    I+ + + 
Sbjct: 715  QNKLKCAIEVRFEKEYKNTDFKSGKNWLIFNVIEKYIRSFLSFELSEIKNNCQIKVLLLE 774

Query: 885  IPAKMAIE------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE----------- 927
                  +          ++  G  DR+DL       + DYKTG   + +           
Sbjct: 775  EKIT-KVPFCSDKLPFPVYFKGIIDRVDLRDD-EYYVIDYKTGVVERTDVRLKEWENLTQ 832

Query: 928  TAQKLIDPQLSLEAAALKAGSFS-QIDCRKVANLFYIRLKQKFKID-CITNDKKKYSAD- 984
              +     QL   A  L       Q     VAN  + R++   +      + ++  S D 
Sbjct: 833  DIKYGKAFQLLTYAYMLAQQDPKYQEKTMTVANFSFKRMQLGLQPFHTYIDKQENRSIDS 892

Query: 985  ELSEKSLKNLIEIVTLLQNGEQPF 1008
                       +++  + +   PF
Sbjct: 893  NTLNLYKDYTEKLLLEIFDEHTPF 916


>gi|312898122|ref|ZP_07757514.1| putative ATP-dependent nuclease subunit B [Megasphaera
           micronuciformis F0359]
 gi|310620790|gb|EFQ04358.1| putative ATP-dependent nuclease subunit B [Megasphaera
           micronuciformis F0359]
          Length = 1152

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 127/1020 (12%), Positives = 276/1020 (27%), Gaps = 173/1020 (16%)

Query: 46  SVTIYVP---TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            V + VP   T  A +     + E    +  +   I     +  +        +  L   
Sbjct: 49  KVLLIVPDQGTYEAERR----YAESLQGRGFMGTRISGFSRLARQVTQGGSGDTVVL--- 101

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            ++  + L L RL   W      + + +                  A   +  I    + 
Sbjct: 102 -NDFDKRLVLRRLADAWAPSFTVLQQAMGQP-------------GFAATASAFITECRSF 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               E L                  + +  + + E L            +  +  +A   
Sbjct: 148 GIDAETLKNAGKALETGVLKQKISDISLLYEKYDEYLQTR--FGSTRDLLTALAEDACRD 205

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
                  I I G     P   +++  +A      ++   ++                   
Sbjct: 206 EFLQGAYIWIDGFQWFTPQQMQVIQALARCAEETVITLTMNPDALDG------------- 252

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                     Q     L        E  + L  +   ++ R++  S         D   +
Sbjct: 253 ----------QQRETALHRR---AYEAYESLCRLFPAVHVRAVGDSAYSTLRAFRDDFFS 299

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRN-LA 399
            + + +  ++      +  ++ +   EE   +A  +   L + ++     +IT   +   
Sbjct: 300 TVPKFQDASV----EGIRAVQCNTRHEEVRYVAGQICHLLRQGRRLKDITVITRTSDPYN 355

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           R  K     +G+        P++T  +   +T++   +F   +  A+  L+K  L  F  
Sbjct: 356 RICKQVFAEYGLPCFTDYRRPMTTHPYVEAVTAVREILFSHLNNDALFRLLKTDLLPFSR 415

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
            E                          L + +      +  +      + R    D   
Sbjct: 416 REVDDLEN------------------YSLAAGIRPLRWLKDEDFTYMPERLRNRCGDLSY 457

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLS-ISDWT-----KLTVTCLQNVCLDEHRKLP 573
              +   I   + PL  ++  K S       +  WT     +  +   Q     E R+  
Sbjct: 458 INDIRRRIFHIMEPLFPFRGEKKSLYEWAGILWQWTYDTQMQSLLASWQEEAEAEGRQEE 517

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
               E+  K +++L ++++E     + +  E+ D++   +              + +   
Sbjct: 518 AREHEQVSKKVTALLTRMVELCGNDEISGKEFCDLLEEGLAESEFTLIPPTLDRITVTSI 577

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-------SDLNLKTAEKYIGQAAH 686
                +    + + G+N+GV+P +  ++  L+   +         L   +  K   +   
Sbjct: 578 DRGYTMRSPIVFVCGVNDGVFPVHYGEDGLLNDKERNFLKNCGLPLGPDSRFKTFQERFF 637

Query: 687 DFEMANGTRH-LIYTRSLRENNIPT-IASRWLQRLLVLG---------------GTDFFD 729
            +         L  T SL +      + S W+  L+  G                 D+  
Sbjct: 638 FYLALTRADEYLHITWSLADEGGEALMPSPWVGLLVNRGYVKAESDTGTITVKNRADYLV 697

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR--------------------- 768
           N +          R      +            L                          
Sbjct: 698 NARAALHFLPSALRSAKDGKRIDDIWWALYDWALLNGYDDSVHTIGAGLFYNSRAQDLSK 757

Query: 769 -------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                          S + ++     P+A +A+  LKL      + D    D GTL H +
Sbjct: 758 GLIESLFLKNKTLRGSVTLLEAYRKCPFAFFAKYGLKLKERQ--EYDFAAPDLGTLVHAV 815

Query: 816 ITELIKKRINKNTPEINHLMKQIID-----------SHFEKENLPPHIDIIWRHLFHKIS 864
           +  + ++ + +  P       +I+                   +        ++      
Sbjct: 816 LRCIGERLLEEGRPWRELKDDEILSLCTVETERAAAEAANNILMSDAYFRQIKNRVVATL 875

Query: 865 HSFLEHEE--KIQSSIEKIFVNIPA---------KMAIESI-GIHLTGFADRIDLLK-SG 911
              +         S      +  P             +     + L G  DR+D L+  G
Sbjct: 876 VRTVRQLRDFSEGSEFSVRALEQPFGTKGAWKGLSFNLPDGVKVELVGQIDRVDTLELDG 935

Query: 912 F--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
              + I DYK+G            ++ QL L  A  +    S+      A   Y R++  
Sbjct: 936 RTFILIVDYKSGKKSITLPEVYSGLELQLFLYMAVARRNLGSK---AVPAGAVYCRVRND 992


>gi|88601851|ref|YP_502029.1| ATP-dependent nuclease subunit B-like protein [Methanospirillum
            hungatei JF-1]
 gi|88187313|gb|ABD40310.1| ATP-dependent nuclease subunit B-like protein [Methanospirillum
            hungatei JF-1]
          Length = 1140

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 153/1170 (13%), Positives = 304/1170 (25%), Gaps = 266/1170 (22%)

Query: 49   IYVPTKRAIQELRSEFIEITGKKSTILP-IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            + +PT R I+ +R + I+      T LP  I +  D+           +  + P  S   
Sbjct: 36   LILPTHRLIRMVRDQLIK---SGITFLPDHICTPDDLCRYLIDRYGDGTVLIKPETS--- 89

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
              L L  L+   +++L        P                 ++L  ++ +I   E  + 
Sbjct: 90   -RLLLVDLLKKHQDELTLFFAQKNPSPRAV------------QDLQILMQVIIRREIDYP 136

Query: 168  DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
                    +           + +    +   L E N           +    +      +
Sbjct: 137  ACLGPLQSEKS-------HQISLLISAYQHILSENNLVDQDTLLSWTIDFLKKRDPTDIR 189

Query: 228  ---GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                 + I G    +P   RL+ T+     G  +   L       I++   +  +  +  
Sbjct: 190  SIIRHVHIFGLFEPMPLEKRLICTLGEV--GETLHYTLPDGKDPDIFSDTGDWLSYGSEE 247

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                +   Q                                             M     
Sbjct: 248  VIPSTGMEQ--------------------------------------------QMTTIFC 263

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLAR-R 401
             +    +    F  ++ +   +   E   +   +    +   + +  A+ T D    R  
Sbjct: 264  HDPSGNDDYLNFPHISGMGFSDPATEMREVIREIVRLHEIGVSYEDIAIATPDFRSTRVY 323

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                 T  GI +  S G  L ++   +   S+ + I K   +  +  +++ P  +F +  
Sbjct: 324  ALEACTDSGIPVRPSQGSLLQSSPLIAYYLSIFDLIEKGMRYDELVRVIQSPYCRFRWEP 383

Query: 462  KYLSR------------------AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            +  +                          +  R        +D +  + D +    +  
Sbjct: 384  EEDADQKSGDQKKSGKRDSRYKYLSYKNFDLLCRTYGLDGGHIDWEKRLPDVLLFSDDEG 443

Query: 504  HVPHWQSRLSEEDK---------ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                                       L    I   I  ++             +I +  
Sbjct: 444  DEQPLPDGQGFVQSKKPVSRTYHPRRPLEKQEIADTIEGIIRLVGIIKRLRDKRTIREHI 503

Query: 555  KLTVTCLQNVCLD----EHRKLPNLWFEEE-------GKTLSSLFSKIIETG------SC 597
                T L+ +        H    N W  +E         TL S    +  TG        
Sbjct: 504  WHFKTILKEIGSPVPGLAHANSLNAWLTDEEYLDLSSFHTLLSELQDLSGTGVISYLNPA 563

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +    I++I  +  ++  ++       +S + + G  E    ++  + L  LNEG  P+ 
Sbjct: 564  VPVTFIDFIGAVRHVLQEKS-GNVSPDASGVILTGIREIAHQHYPYVFLVSLNEGHIPRL 622

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRW 715
            T + PF +    S ++ +T    + Q  + F  A      HL  +    ++    ++S +
Sbjct: 623  TTRLPFTNSSENSRMDTRTLSDILRQEKYQFITALAAGTTHLYLSWYEHKDERTVLSSVF 682

Query: 716  LQRLLVLGGTDFFDN---------------------------LKKRGQCYLDWTRKLDYT 748
            +  L        +                               +R + Y+     L   
Sbjct: 683  IDYLKSSTLLPEWGRGSDEGGYSGFPGDMEASYSAGVCIHNSEWERSRSYIPEDVLLSSL 742

Query: 749  TKQPHYKR---------------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
             ++   +R                             +   ++S S ++     P+  Y 
Sbjct: 743  VQRISIERTYRFRLNRSEYDGIIGDDQIIRSALHFQFSPAYSWSASMLETYAKCPFRFYL 802

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITEL--------IKKRINKNTPEINHLMKQII 839
             R+L +  +P    D     +G L H I++          +             L++ I 
Sbjct: 803  ERVLHIRPLPDIGSDIPPETKGNLIHVIMSRFKRTMHENRLLPIKEAGFDTALSLIRDIA 862

Query: 840  DSHFEKENLPPHIDIIWRHLFHKI----------SHSFLEHEEKIQS---------SIEK 880
            +   +K    P+   +W     +I             F+  E    S             
Sbjct: 863  EEECDKV---PYTTPLWIAKKRQIMGGEDIGGGILERFIMTEIDRLSPDEDGRVPHQFTP 919

Query: 881  IFVNIPAKMAIESIG-------------------------------------IHLTGFAD 903
             F                                                  I   G  D
Sbjct: 920  RFFEYSFGAVRGPDDDPDSRTEPVDLLAIQRELKKSQNPGQNDRDTSESENSIRFIGKID 979

Query: 904  RIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
            RIDL   G   I DYKTG   P      ++   QL L   A +      I   K     Y
Sbjct: 980  RIDLTPDGLFGIIDYKTGKNIPGSSDLTRMTALQLPLYLLAYQH-----ISSNKPVFGSY 1034

Query: 963  IRLKQKF----------KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP-FISH 1011
            I+L++K               +   K   S  +  E     L   ++ + +     F   
Sbjct: 1035 IQLQRKILHSIPLYDPTLKQTLPKGKLPRSEPQWQEILENALHSSISHVHDIRNGLFPIQ 1094

Query: 1012 LRLSEKSNIQSEYDHLARV--------AEW 1033
                  ++    Y  + R          EW
Sbjct: 1095 ATTECNADWYCPYKTICRFQPDRGSQLGEW 1124


>gi|327403658|ref|YP_004344496.1| hypothetical protein Fluta_1666 [Fluviicola taffensis DSM 16823]
 gi|327319166|gb|AEA43658.1| hypothetical protein Fluta_1666 [Fluviicola taffensis DSM 16823]
          Length = 949

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 152/1069 (14%), Positives = 298/1069 (27%), Gaps = 224/1069 (20%)

Query: 42   LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
            L   +V I VP++R I  L+    +I   K  + P I ++   +++              
Sbjct: 17   LDFQNVCIVVPSERMISYLQRAIYQIYQ-KPVLSPKIITIDLWIQDLS------------ 63

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            PV  I +   L  L  I+++                   S  + +   + L    D I+ 
Sbjct: 64   PVPIIDKTSLLFELYEIFKD-----------NPVELNVNSFDSFMTWGQILLSDFDEIDR 112

Query: 162  EEKKWEDL-HALKNEKYGMWWL--------------LAADFLKIASKYWTERLVELNASS 206
                 + L   L++ +    W                  D LK       ERL   + ++
Sbjct: 113  YIVPADQLFKNLRDIREIENWSFNSEELSKGQLQFMAFWDKLKPYYFALEERLKTQSVTT 172

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                             +      I AG      +   +M  ++     A +L   D   
Sbjct: 173  KGKAYRHFSTNIDLAFKEDKDAQFIFAGFNALSKSEIEIMRQLSKL-GRASILMDSDEFY 231

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                 +   +                      L   L++K         ++ ++  R + 
Sbjct: 232  FYNSIHEAGQFQ------------------RDLCRKLELKSLPFIENHLLTKQLDIRVVE 273

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
              +                                            +   L+    +  
Sbjct: 274  CPQFTAQA-------------------------------------QVVGSELKKLTSQQL 296

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN----- 441
             ++ ++ AD +L   +   L     + +I+ G+PL  T   S +  +             
Sbjct: 297  NETLVLLADESLLSSILKHLPAEIGHANITVGLPLRQTSLRSWVDLIFRLQESFLRRGNS 356

Query: 442  --DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
               +        HP          +       E+  +     S +   L    LD     
Sbjct: 357  SIYYRDFIQFAHHPFI------LGVLSTSEKKEIQNIESRIISNNWHFLDRKKLDLSERL 410

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                 +     +    D + A+ L+  +   +                     W      
Sbjct: 411  SVLNQLIFEPWKN---DWKKALQLIQQLNTQLDL-------------------WLDDANE 448

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
              + +     +    L                I      + +   +  +       ET+ 
Sbjct: 449  LERAIVRRFDQSNIALQN--------------ILARKYPEMSLASFRTLFNGNWSNETIA 494

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                    L I+G LE+R L+F  + + GLNEG  P   + N  +   ++    L T  +
Sbjct: 495  YFGNPLEGLQIMGLLETRGLDFKRVFVFGLNEGSMPPLNSINTIIPMDLRKYFELPTPRE 554

Query: 680  YIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
              G  AH F         ++ T S        +  SR++Q++ +        N   R Q 
Sbjct: 555  KQGLFAHHFYRLLHSAEEMLITYSSASEAVGSSEPSRYIQQIELEL---AQVNPNIRIQK 611

Query: 738  YLDWTRKLDYTTKQPHYKRPKP-FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                    +        K P+      E      SFS + + +  P   Y R +L+    
Sbjct: 612  SFYKAGNNEKIEIAEITKTPEVIDRIYEVLQNGISFSMLDKFMACPLDFYYRYVLRFGEE 671

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINK------------NTPEINHLMKQI------ 838
               ++D +    GT+ H ++ +L    ++K             T +    M++       
Sbjct: 672  NKVEEDIESNTLGTIIHAVLEDLFTPFVDKFDDSGRKIAGKVMTEDDLTKMEKEVPLLVS 731

Query: 839  --IDSHF--EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-----IEKIFVNIPAKM 889
               ++HF  +K       + I   +  ++  + L  +  I S      +  + +    + 
Sbjct: 732  KSFENHFSQDKNTWQTGTNHINFEVAKEMVVNVLRRDRAILSENPEKALFILGLEKKYET 791

Query: 890  AI---------ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE------------- 927
             I         + + I L+G  DRID    G   I DYK+G    ++             
Sbjct: 792  TIQFPEFARNNQPLEIRLSGICDRIDQF-DGVHRIIDYKSGSVNAEKVELKKTKNQETYE 850

Query: 928  -----TAQKLID-----PQLSLEAAALKAGSFSQID--CRKVANLFYIRLKQKFKIDCIT 975
                   +K         QL +         F +      K     +  +K+      + 
Sbjct: 851  EAILLDKRKGKSTQKHVLQLLIYCYLY----FKETGIMTDKAGIFSFRSIKESPHFLKLP 906

Query: 976  NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
             D KK    E  EK    L+  ++ + +   PF          +    Y
Sbjct: 907  EDFKKEDIPEFFEKI---LVNTISEMLDKTSPFT-----HNVDSKYCAY 947


>gi|134299274|ref|YP_001112770.1| UvrD-like DNA helicase, C terminal [Desulfotomaculum reducens MI-1]
 gi|251764588|sp|A4J4E2|ADDB_DESRM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|134051974|gb|ABO49945.1| UvrD-like DNA helicase, C terminal protein [Desulfotomaculum reducens
            MI-1]
          Length = 1155

 Score =  225 bits (574), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 137/1050 (13%), Positives = 266/1050 (25%), Gaps = 153/1050 (14%)

Query: 59   ELRSEFIEITGKKSTIL--PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
            E+R    +  G+ S IL  P   +     E        L   +   V + +RL    R++
Sbjct: 21   EVRQRLRQNQGESSIILLVPEQATFQ--YEYMLATTPELKGMIWAQVLSFRRLA--FRVL 76

Query: 117  LIWRNKLPDIIKDLYPESPLSLPIS-----------PANAIWLAKNLADIIDIIETEEKK 165
                      I DL  +  L   +             A     A +LA  +  ++    +
Sbjct: 77   QEMGGAARAHIDDLGKKMVLRRILEQRKSELKVFHRAAKQPGFADSLASALSELKLYRIE 136

Query: 166  WEDLHALKNEKYGMWWLLA--------ADFLKIASKYWTERLVELNASSPVGYQIALMRA 217
             ++L              A           L +      E L     + P  Y   L + 
Sbjct: 137  PQELQK-----GIQHMQEAPGSAIRDKLADLSLLYNDLEEFLSGR-FTDPDDYLNLLAQR 190

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                        I I G TG  P    ++  +    +   V    D        + +   
Sbjct: 191  LPGS-RTVQGAEIFIDGFTGFTPQEYGVIEQMLGTADRVHVALCFDPMYLQEPCDELEFF 249

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
               + +               LLD     R  ++       E   R    S         
Sbjct: 250  YPTVET------------YHTLLDMAGALRISLEPPIICGKETPVRFQKDSAIAHLEKYY 297

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSALIT 393
                                 V+L+   N R E  + A  +    R      +    ++ 
Sbjct: 298  FRHPLQA--------SDAAQGVSLVACANRRAEVEAAAREIIRLCREEELSWRDIVVVLR 349

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
               N +  +       GI + I     +       ++ S L  I +   +  +   +K  
Sbjct: 350  DLTNYSDLINTIFNDHGIPVFIDEKRNVLHHPLVELIRSALEVITQHWAYDPVFRYLKTD 409

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L      +         LE   L          D +     R  T   +  +   ++   
Sbjct: 410  LIPVQRDDVD------RLENYVLAHGIRGNRWNDNRDWTYRRQYTLGEDCDIDDNEAEQL 463

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT--KLTVTCLQNVCLDEHRK 571
             +   +    ++HI      +      +  T     + +       +           R 
Sbjct: 464  AQLNVVRYAAIEHINNFSKKVANCGNVRQITTALFELLESLSVAERMEAWAKEAEVAGRL 523

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
            +      +    +  L  +I+E     + N  E++ ++   ++   +         + + 
Sbjct: 524  IEAKEHAQIWDNVILLLDEIVEAMGEQELNLEEYLQVLEAGLESLKLGLIPPGLDQVVVG 583

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAA 685
                SR  N    ++ G+++GV P    +    S   +  L          A + +    
Sbjct: 584  TLERSRNPNVKAALVLGISDGVLPARPVEEGLFSDYEREALREIGLNLAPGARRKLFDEQ 643

Query: 686  HDFEMAN--GTRHLIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLKKRGQ------ 736
            +    A    +  L  +    ++     + S  +QR+  L      + L           
Sbjct: 644  YLIYTALTRASSRLWLSYPQADDEGKALMPSPVIQRVKELLPLIQEEILPVEPPCLGGDL 703

Query: 737  --------CYLDWTRKLDYTTKQPHY---------------------------------- 754
                            L  T                                        
Sbjct: 704  AFIANPSRSLSYLAAMLRETVAGRLVDPVWQDVYSWFVQQPQYQESCRRVLAGLYHVNQE 763

Query: 755  --KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                P     L       S S +++    P++ +    LKL     F       D G  F
Sbjct: 764  TSLPPSMGRRLYGSRLRASVSRLERFTTCPFSHFLSHGLKLKERSQF--KLAAPDLGQFF 821

Query: 813  HNIITELIKKRINKNTPE----------INHLMKQIIDSHFEKENLPPHIDIIWR-HLFH 861
            H  +    ++    +             I   + + +    + E L       +      
Sbjct: 822  HAALKLFAERIKALSLDWGQLSRGQIITITGEIVEELAPQLQNEILLSTARHRYLIKKLR 881

Query: 862  KISHSFL--EHEEKIQSSIEKIFVNIPAKMAIESIGIHL----------TGFADRIDLLK 909
            +     +    E   + S   + V I      E   + L           G  DRID   
Sbjct: 882  RTLERAVVTLAEHARRGSFRPVAVEIGFGDNAELPAVQLDLADHCQMEMAGRIDRIDSAC 941

Query: 910  SGFVD---ITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIR 964
             G      + DYK+G    K       +  QL      AL+            A + Y  
Sbjct: 942  EGGQHYYSLIDYKSGQPDIKLADIVHGLKLQLLTYLDVALRYSKQLTQQEALPAAMLYFS 1001

Query: 965  LKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            ++  F        +++   + L +  +K L
Sbjct: 1002 VRDPFVASTGPMTEEEAEKNLLKQLKMKGL 1031


>gi|332829180|gb|EGK01844.1| hypothetical protein HMPREF9455_01992 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 963

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 146/1045 (13%), Positives = 301/1045 (28%), Gaps = 156/1045 (14%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
            PF   +  A                   ++  T   P +RA    +    +    +    
Sbjct: 3    PFLYNVAQAYYKSYG-----------QDISRYTFVFPNRRAGIFFQHYLSQ-IAGRPIFS 50

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL-ILIWRNKLPDIIKDLYPES 134
            P I ++ D+ E+                  I+ L  L  + I +  +         + E 
Sbjct: 51   PEILTVTDLFEKLS---------PYKKADRIEMLFLLYDIYIRVSSSTETFDEFLYWGEM 101

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
             L+        +  A+ L   I  ++  +  ++ L   + E    +W    +FL I    
Sbjct: 102  LLNDFDDVDKYLVDAQQLFRNIHDLKEIDAGFDYLTESQIEAIRRFWS---NFLPI---- 154

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
                      +      + +     +                    +    +        
Sbjct: 155  --------GENDKKKDFLEMWEVLFQ-----------------LYTSLREQLHNKGMAYE 189

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
            G I        +   + N I  K           + H   S   LL +L  ++       
Sbjct: 190  GMIF-----RDVTERLANNIDYKLPFEKVIFVGLNGH-SKSEETLLKYLHKRKIADFYWD 243

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
              S  +       S          M     L  +   +      V +I   +   +A  +
Sbjct: 244  YSSPLVRDPQNKASFFIDRNK---MLFPTQLTLEPEELSLDLPVVEVIGIPSAVGQAKYV 300

Query: 375  AIALRMSLDENKKK-------SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
               ++  +DE +         +AL+  D NL       +      I+++ G  L  +  S
Sbjct: 301  HTIIKSLMDEQQITSSTQAMNTALVLPDENLLLPALYSIPGEIDKINVTMGYSLGNSSIS 360

Query: 428  SILTSLLNAIFK--------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
             ++  +                 +  +  ++ H        ++      N ++      +
Sbjct: 361  GLMEHVFELQRNIRRSENYTGFYYKPVLAILNHRYITNVASDEAKVLRTNIIQYNKTTVS 420

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                    L  L+                              +  ++   ++ L T  +
Sbjct: 421  SQDLQSHPLFQLI---------------------FRPVFNWQDIPYYLQSILSTLNTTLS 459

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
                                            +   +  E  KT++ +   +      + 
Sbjct: 460  VNEKNEEK--------------DEDINARSIDIECEFIVEYYKTINKMDEALRNVLPEMS 505

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   +  ++ +LI G +V  + E  S L I+G LE+R L+FD LI+  +NEG++P   A
Sbjct: 506  VD--TYFKLLRKLIVGISVPFRGEPLSGLQIMGVLETRALDFDNLIILSMNEGIFPLKKA 563

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQ 717
             + F+   ++   +L T E      ++ F       + +      R   + T   SR+  
Sbjct: 564  ASSFIPYNLRKGFDLPTYEHQDSIFSYHFYRMINRAKRIYLLYDTRTEGLQTGEVSRYYN 623

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            ++  L    F    K                 K P          L+   +  S S I  
Sbjct: 624  QIKHLYNDSFDIREKLAVYKVSSTESLAISIQKTPQIMEKM-NVFLQGGDKRLSASSINT 682

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-TPEINH--- 833
             +N P   Y   +  ++      +  + +  GT+FH+I+  L +    K  T ++ H   
Sbjct: 683  YLNCPLQFYFSVVENMEEEDEIAETIEASTFGTIFHSIMEWLYEPFKGKMITADLLHNIS 742

Query: 834  ----LMKQIIDSHFEKENLPPH-------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
                L+ ++I+  F +              + +   +  K     L  + K+   I    
Sbjct: 743  KNNKLLTEMIERSFAENYFKSEKVKRLTGQNYLTGEVLRKYIRQVLATDAKLTPFIYIDS 802

Query: 883  VN-IPAKMAIESIGIH-LTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935
               I     + S  +  L G  DR+D +  G   I DYKTG    + +  + L D     
Sbjct: 803  EERIKKDYPLPSGKVVSLKGIIDRVDEVS-GHTRIIDYKTGKGVLRYKEMKDLFDKEMKD 861

Query: 936  ------QLSLEAAALKAGSFSQIDCRKVANLFYIR------LKQKFKIDCITNDKKKYSA 983
                  Q+ + +         +I       ++Y+R                  D +    
Sbjct: 862  RPKAVMQVFMYSHLYMLDHPDKILE---PGIYYLRNLFDTKFDPDVISKSGRGDGRITDF 918

Query: 984  DELSEKSLKNLIEIVTLLQNGEQPF 1008
             E   +        +  + + + PF
Sbjct: 919  SEYRPEFTGYFDACLEEIFDPQVPF 943


>gi|323483648|ref|ZP_08089032.1| ATP-dependent nuclease subunit B [Clostridium symbiosum WAL-14163]
 gi|323403075|gb|EGA95389.1| ATP-dependent nuclease subunit B [Clostridium symbiosum WAL-14163]
          Length = 1175

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 136/948 (14%), Positives = 260/948 (27%), Gaps = 126/948 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF----LKIA 191
            L L  S  + I     L  ++          E L  L +E     W          + + 
Sbjct: 106  LKLFGSHLDKIGFIGELKSMLSEFFQYGITAEVLEELVSEADKENWSAMLKQKLNDMVVL 165

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             + + +   +            L R   +         + + G TG  P   RL+  +  
Sbjct: 166  HRAFKKYTEDKKCIVKEEILEMLCRVLPDS-ELIRGSVVTLDGYTGFTPVQYRLLELLLQ 224

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
            +    +V   +D                +  S     S H    L  L       RE+  
Sbjct: 225  YCRRVVVTITMDPEENPY--------RESGPSHLFHMSKHTVCRLTDLAAQTGAGREEDI 276

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
             L       +           P      +       +          V L ++D   +E 
Sbjct: 277  LLLQYPAYRFK--------NSPELQFIEKELFRFRGRKYEESSGAPGVVLFQSDTPLKEV 328

Query: 372  ISIA---IALRMSLDENKKKSALIT-ADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
              IA     L        +  A++T A  + +R +  +     I   I     +      
Sbjct: 329  QMIAGEIERLIKQEKYRYRDIAVVTGALDDYSREIVRQFETNRIPAFIDYKKNIMGNPMV 388

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             +L + L  + K   + ++   +K  L                LE  AL     S+   D
Sbjct: 389  ELLRAALEVMQKNFSYESMFRYLKTGLVTDKQEMLS------RLENYALALGIRSFKRWD 442

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
            +    + R A   N   +  ++  +    + L  +                    +    
Sbjct: 443  MAWEAVYRGAELINLEELNAFREEILTPLRPLKDVFGSRKSTVREKTEALVHFLEALHIE 502

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D+                       + +    + +LF +I            E+ D
Sbjct: 503  EKLQDYEAEFRET--------GEVSLEKEYSQVYGLVITLFDRITALLGDEAVGKKEYSD 554

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            I+    +   V         + +     +RL +   L   G+N+G+ P  + +   L+  
Sbjct: 555  ILDAGFEEIKVGLIPAVVDRVVVGDITRTRLSHIKVLFFAGVNDGIVPSASGRGGILTEA 614

Query: 668  MQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQR 718
             +  L         TA +          +     +  L  + +    +      S  + +
Sbjct: 615  ERRSLKSRQVELAPTAREEGFLQRLYLYLVMTKPSDRLYLSYAASSSDGKSLRPSGLIGQ 674

Query: 719  LLVLGGTDFFDNLKK---------------------------------------RGQCYL 739
            +L +          +                                       R + Y 
Sbjct: 675  VLKMFPEKRVMRADEKQMAAWSLPLGKRRVIEGLKDYGSSRQDSRFMELFGFFLRSELYR 734

Query: 740  DWTRKLDYTTKQPHYKR---PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
            D  R+L   +   +  R         + +     S + ++Q  +  YA +    L+L   
Sbjct: 735  DELRQLVEASFYTYEDRGIGRTAAKEIYSATLHGSVTRMEQYASCAYAHFLAYGLELSER 794

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFEKEN-- 847
                 +    D G LFH  I    K+   +N         +   L+ + +    +     
Sbjct: 795  --PVYELAAADIGNLFHGSIDLYFKRMKEENRSFREISEEDRKKLVSECVSDVTKDYGNT 852

Query: 848  -LPPHIDIIWRHL-FHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIE---S 893
             +       +      +I+    +   E+  +   E     +          M I     
Sbjct: 853  IMSSSARNQYLERKVRRITDRTVWALTEQLKKGDFEPAGFEVTFSPADNLKAMKIPVSKE 912

Query: 894  IGIHLTGFADRIDLLKSGFVD---ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSF 949
              IHL G  DRIDL + G +    I DYKTG        A   +  QL +   A      
Sbjct: 913  EAIHLKGRIDRIDLCEDGDLLYLKIIDYKTGKTKFDLMEAYYGLQLQLVVYMDAALEKEQ 972

Query: 950  SQIDCRKV--ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
             +   +KV  A +FY  +      D +   KK+   +E  +  L+ L 
Sbjct: 973  RKHPDKKVVPAGIFYYNIA-----DPMVERKKEMDEEETKQAILEQLR 1015


>gi|325279706|ref|YP_004252248.1| hypothetical protein Odosp_0998 [Odoribacter splanchnicus DSM 20712]
 gi|324311515|gb|ADY32068.1| hypothetical protein Odosp_0998 [Odoribacter splanchnicus DSM 20712]
          Length = 938

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 137/1068 (12%), Positives = 302/1068 (28%), Gaps = 183/1068 (17%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
            + F + +   ++     +            A +TI  P KRA   L  E       +   
Sbjct: 2    ASFLQLLAKDIIRKYGTD-----------FADLTIIFPNKRAGLFLAEELSRQID-RPVW 49

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
            +P I +L + +E+        + +L      I +L +    +     K  D     +   
Sbjct: 50   MPEILTLTEYIEKHSGLKKAETLSL------IIKLYKSYTAVSGSSEKFEDFYF--WGNM 101

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW---------LLAA 185
             L+        +  AK+L   +  ++  +  +  L   + +    +W             
Sbjct: 102  LLADFDDIDKYLVDAKDLFSNLIALKELDLNFPYLTEEQIKAIHRFWKSFNPEKFSREQQ 161

Query: 186  DFLKI------ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
            +FLK+         ++   L E         +         +        I+IAG     
Sbjct: 162  EFLKVWDKLYATYTHFKTHLAETGICYEGMNERYFCEHIETYAH---PEHILIAGFNALN 218

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
                ++  +       A      D                  T+     + H      KL
Sbjct: 219  LCEKKIF-SFWQDSGIARFYWDYD---------------IYYTADEHQEAGHYIRENLKL 262

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
                                                       ++      N +     +
Sbjct: 263  F----------------------------------------PNELDIEHFNNFRYNGKTI 282

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
              +   +   +A  +        +EN +++A++  +  +   V   +  +   I+++ G 
Sbjct: 283  EYLAVPSTIGQAKLLPALTESLREENPRQTAIVLCEEQMLIPVMHSIPEYFSKINVTMGY 342

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            P                  +     A+ +++                     +L      
Sbjct: 343  P-----------------ARNTSVAALISML--------------------CDLKNYARQ 365

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
            +        K ++         +      Q   +  +++  V +++  L          +
Sbjct: 366  EGDTTYYYYKPVIALLNHKLIKDLCPEEIQQITNYINQKNIVYVIEKSLHFHELTRAIFS 425

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
            +       + +     L    +     D   K        + + L + F +       I+
Sbjct: 426  SDQHEKIPVYLLKILNLLTRSVLKEEADPIEKEFVFTVYTQIQNLQNTFEE-----EGIE 480

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                 ++ II ++I   ++    E    L ++G +E+R+L+F+ LI+   NEG+ PK T 
Sbjct: 481  PENKLYMQIINKVIGNLSIPFSGEPLEGLQLMGLMETRMLDFNHLIILSANEGILPKTTL 540

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQ 717
               F+   ++    L T E      A+ F           I   S  +       SR+L 
Sbjct: 541  PASFIPYNLRFGFRLPTPEHQDAVFAYYFYRLLQRSRDIHILYTSGVKGMNGGEMSRFLY 600

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            ++    G    +   +      +         K P            ++ +T S S +  
Sbjct: 601  QIKYESGLTVAERNFQNPISTQNPKEI--RIGKTPPILH-ILERYTRSEDQTISPSALNT 657

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-TPEINHLMK 836
             +      Y + I ++       ++ D    G +FH     L         T      + 
Sbjct: 658  YMECSLKFYFKYIAQIKEKEELAEELDHRLLGNIFHECSESLYATIPGGEITKAAIDTIL 717

Query: 837  Q---IIDSHFEKENL-----------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
                +I+ H  +  L               + +   +  K       +++KI      + 
Sbjct: 718  ANGSLIEEHIRRSYLKVYDPKISRLIDSGSNELILGVIKKYLREMFSYDKKICP-FRLLA 776

Query: 883  VNIPAKMAIESI------GIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-ETAQKLIDP 935
            +     + ++         + + GF DRID      + + DYKTG +    +T   + DP
Sbjct: 777  MENRFHVPVKIGIEGQEKTVFVGGFIDRIDRT-DQGIRVIDYKTGADTTAFKTIASVFDP 835

Query: 936  ----------QLSLEAAALKAGSFSQ---IDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
                      Q  +          S+   I       L +    + +      + +   +
Sbjct: 836  ANPTRNKAAFQTMVYCLMYDHVHPSEQPLIPGIYSTKLLF---GKDYDFRLKCDKELIQN 892

Query: 983  ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
                 ++   +L +++  L + E PF       EK      Y  + R 
Sbjct: 893  FRYYQQEFSDHLRQLLEELFSPEHPFCQTDN--EKKCRTCSYAGICRR 938


>gi|90415965|ref|ZP_01223898.1| hypothetical protein GB2207_01992 [marine gamma proteobacterium
            HTCC2207]
 gi|90332339|gb|EAS47536.1| hypothetical protein GB2207_01992 [marine gamma proteobacterium
            HTCC2207]
          Length = 923

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 132/911 (14%), Positives = 258/911 (28%), Gaps = 86/911 (9%)

Query: 185  ADFLKIASKYWTERLVE----------LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234
                   ++ W E++                  V + +     E +         + I G
Sbjct: 26   QRLAAKITQAWGEQISADLTQSCSAWKQPRVYSVDHWLRACWDELQDQNHSLVRGLAIVG 85

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS-----NTTYS 289
            +  S     R ++          V    D       WN   ++      S       +  
Sbjct: 86   TQQSRYYWERAIADDGLEQPVNFVKLAGDTLKALENWNLRADQVPGENPSVEYFKRWSGR 145

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                    KLL      +   +     +       MV      PP  + +  T   +   
Sbjct: 146  FDELLRRNKLLTIQRSWQLVGQGFDCSALNREAEIMVYGFQSTPPLQAALIATASSQVTR 205

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA--LITADRNLARRVKLELT 407
                   ++V  IEA++  +E    A      L  N ++    ++    +  +RV   + 
Sbjct: 206  LESVNSSTEVVRIEAEDSPQELRLAASWAAQQLKINPEQRIGIVVPELNSSLQRVARVVN 265

Query: 408  RFGINIDI----------------SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
                 +D                 SAG  L  T        ++  +           L+ 
Sbjct: 266  EALNTVDNNTSLENPDGVKVIANISAGTALRDTPMVHSALLMIGLLKDKRPLSEWLHLLY 325

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             P + F                  ++  K +     L   +       K+N      +  
Sbjct: 326  SPYSAFDQLPLSFRA------DSEIQLRKRNRFDFSLSQFITAVTPKHKSNDDGLDNKDN 379

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNS-TCGNLSISDWTKLTVTCLQNVCLDEHR 570
              +E               + PL   +  +        S + W +  V  L ++     R
Sbjct: 380  QLDESD------------ALNPLRHMRDYERRQINSQQSFAAWGEFFVGYLTDLGWPGKR 427

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
               ++ +++       L          I+         + +L       P+   +  L I
Sbjct: 428  TANSIEYQQRQHWNRLLEQFTGLDNLGIEVGLSTAFKHLQQLAQDSVFHPQTADAP-LQI 486

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDF 688
            LG LE   L FD L +  ++   +P + A N  L    Q    +     E+ +  A    
Sbjct: 487  LGLLEGSGLRFDQLWIVDMHSQNFPASVAINQLLPAEFQRLHQMPHSLPERELEIANQLL 546

Query: 689  EMA-NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
            +   N +  LI +            S  +  +  LG     ++ K               
Sbjct: 547  QSYKNNSGRLIVSHPKIRGEEQLDPSPLISDIP-LGSHKVLNSHKLFDSPQPHPPWLYQD 605

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
               Q    +  P+ P     R  S + +K     P+  +    LK + +    +     D
Sbjct: 606  YQCQLLADQAPPYSPRLETIRGGS-NLLKNQSICPFNAFVTHRLKAEPLEEPSQGLSALD 664

Query: 808  RGTLFHNIITELI------KKRINKNTPEINHLMKQIIDSHFEKENLP------PHIDII 855
            RG+L H I+  L             +  ++   +   I+    +               +
Sbjct: 665  RGSLLHEILFRLWGIWKTSATLQALSDQQLQQQLATTIEQTLTEWAPRHPILRGDRFRGL 724

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
             +    K+   +LE E+      E + +     +    + I+L    DR+D +    + I
Sbjct: 725  EQQRLEKLLTQWLEEEKLR-PPFEVVELESKNSVRFGDLEINL--RLDRVDQIGD-KLLI 780

Query: 916  TDYKTGDNP-KKETAQKLIDPQLSLEAAA----LKAGSFSQIDCRKVANLFYIRLKQKFK 970
             DYK+G       +  + +DPQL L   A        +F+QI   K+    ++      K
Sbjct: 781  IDYKSGAVKESSWSGTRPVDPQLPLYVLASNPRANGCAFAQIKGGKIK---FVG-STDSK 836

Query: 971  IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ-PFISHLRLSEKSNIQSEYDHLAR 1029
                          +   + +      ++ L +       S     +      +Y  L  
Sbjct: 837  FLASEKVTGDTDLSQQWAEQIDAWQSALSNLADEFVNGHASVEVYDQTQFGYQDY--LLP 894

Query: 1030 VAEWREEYDIS 1040
            +  W EE DI+
Sbjct: 895  LNRWSEEADIN 905


>gi|326383309|ref|ZP_08204997.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198059|gb|EGD55245.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
          Length = 1101

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 117/1061 (11%), Positives = 273/1061 (25%), Gaps = 136/1061 (12%)

Query: 25   LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI------TGKKSTILPII 78
            L+  T V       ++P     V +    +RA  +LR+E          +   +   P++
Sbjct: 57   LIVDTAVARLLDPGVDPES---VLVLAANRRAATQLRAEITRRVLSAGGSLGGALREPLV 113

Query: 79   KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
            +++                N  P      RL+  +   +I R  L   ++D     P S 
Sbjct: 114  RTVHSYAFAVLRLQASAHGNPPP------RLITGSEQDVILRELLAGDVEDGADYWPAS- 166

Query: 139  PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                      A+ L D++          +DL  L        W+ A    +   +     
Sbjct: 167  LRPALTTDGFAQALRDLMMRAAERGLGPQDLAELGRTHDRPEWVAAGHAFRQYEE----- 221

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                            +  +A            + GS  S  AT   +          ++
Sbjct: 222  ---------GMLLRGAVGLDAPEASVTAVDAAELIGSALSAFATDPDVLAGQRQRIRHVL 272

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
            +       P A        +   ++   + +    +              D     ++  
Sbjct: 273  VDDAQHLDPQAASLIRLIGTGADSTVVASDTDQSVFGFRGADPRFANAVADDDPDRDILL 332

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILE---NKIPNIQKCFSDVALIEADNEREEAISIA 375
            E   R      +        +             P+  +      +    +  +EA ++A
Sbjct: 333  ENDFRGSPAVNAVGRALALRLPGARPHRYPTAAEPDDPEHRGHADVRVFSSAAKEATAVA 392

Query: 376  IALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSIL 430
              +R +   +     + + ++ +       ++   +  G+ +   A  IP+      +  
Sbjct: 393  DMMRRAHLFDGVPWSEMAVIVRSVPRALPAIRRAFSSAGVPMATPATDIPIHRQRAVAAF 452

Query: 431  TSLLNAIFK--LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            + +L         D   +  L+  P      P       +    +   RG +        
Sbjct: 453  SLVLRVAGGGPPLDADEVTALLTGP-VGAADPTNLRRLRRGIRRIDEARGRE-------- 503

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
               +        +   +  +   L++ +      +   +    T        + +     
Sbjct: 504  ADSLDSLARALDDPELMGTYLGGLTDFEAIALKQVRKVVDAARTAHTAGVGVEETLWRAW 563

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            S S   +              +   ++         +  F+  +     +      ++D 
Sbjct: 564  SASGLERRWTAQSLRGGRGGDQADRDMDAMLAMFEAAGTFADNLPAAGVLG-----FVDY 618

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            + +L      +  +    ++ ++    +    +D + + G+ +G+WP   ++   L    
Sbjct: 619  LGQLQIPRESRVAVSGVESVAVVSAHAAAGREWDVVAVPGVLDGLWPSLRSRGSVLHTPA 678

Query: 669  QSDL-----------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
              DL             + A     +           R  +   ++ + +     SR++ 
Sbjct: 679  LIDLLSGVGADAVDTVARGAVMLADERRLLLVACTRARSRLLVTAIEDGSGDASPSRFVP 738

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDW-------------------TRKLDYTTKQPHYKRPK 758
             +    G       +   +  LD                        D +       R  
Sbjct: 739  EIAEALGGYGATEPESADEIPLDPGVRRVLSLPSLVAELRAVAVAGADASGGPDERTRVA 798

Query: 759  ------------------------------PFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                                          P    E  PRT S S +  L          
Sbjct: 799  AALLADLAQAGVSGAAPADWFGLVGPSTEVPLWTPENGPRTLSPSNVDALTKCSLRWMLE 858

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
            R            D ++   GTL H     L++           +     +         
Sbjct: 859  RHGG------RDGDAEQAVTGTLVH----TLVQAVAGNLDRTEVNAALHEVWERVSSPAQ 908

Query: 849  PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI---------GIHLT 899
                  +       +  +F +     +  +    V +     + +           + L 
Sbjct: 909  WYSARELE--RAEGMLTNFRDWLRISREDLTAAGVEVEVDATLPTGVDDHGNALLPVRLV 966

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
            G  DR++    G   + D KTG NP        + PQL+    AL+ G  + +   +   
Sbjct: 967  GRMDRLETDSRGRPVVVDVKTGKNP-VRAVDAEVHPQLATYQLALRLGGVTGLGSTEPGG 1025

Query: 960  LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
               + +    K        +     E  ++ +  + E    
Sbjct: 1026 GRLVYVASANKKTGAAQRVQPPLTPEQVDEWISVVREAARA 1066


>gi|320008692|gb|ADW03542.1| UvrD/REP helicase [Streptomyces flavogriseus ATCC 33331]
          Length = 1156

 Score =  224 bits (570), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 129/1091 (11%), Positives = 265/1091 (24%), Gaps = 145/1091 (13%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE            A + +   +++A  ELR       G   T  P   +        
Sbjct: 66   TLVEAVARRVAGGTDPARILVLTFSRKAAVELRDRMAARLGG--TRGPQATTFHSYCYAL 123

Query: 89   FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A        +    +S  ++ + +  L+     +L      L          +     
Sbjct: 124  VRAHQDADLFADPLRLLSGPEQDVTVRELLAG---QLGLEQAGLAHVRWPGELRACLTTR 180

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++          + L A         W  AA FL         + V   A  
Sbjct: 181  GFADEVRAVLARSRELGLGPDALAAFARRTGRPDWSAAAQFLAEYLDVLDAQGVLDYAEL 240

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP--------NGAIV 258
                 +   R E    +      + +     + PA  RL+  +A +          G  +
Sbjct: 241  VHRAVLLAERPEVAAQLARNYDAVFVDEYQDTDPAQVRLLHALAGNRGSTAPGTGGGRTL 300

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
            +   D       +                 +                +   V  L     
Sbjct: 301  IAFGDPDQSIYAFRGADVNGILDFPDTFRRADG--------------EPAPVGVLTTSRR 346

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                              + + +  +  ++  +  +    V          E  +IA  L
Sbjct: 347  SGAHLLEATRLLTRRMPLTRLPSDKVRAHRELSAVREGGRVEAYTYPTPSTELENIADLL 406

Query: 379  RMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSL 433
            R +  E     +  + L+ A       V+  LT  G+ ++I     PL      + L + 
Sbjct: 407  RRAHLEEGVPWRDMAVLVRAGGRSIPAVRRALTSAGVPLEIDGDDLPLRHEPAVAPLLTA 466

Query: 434  LNAIF-------KLNDFMAIATLVKHPLAKFGFP-------------------------- 460
            L  +           D  +   + + P A                               
Sbjct: 467  LRTVATAALRLGAPEDPDSAEAVEEDPEAGEAPAGDVSDDTGSGGRGTGTDGGRGAGTAD 526

Query: 461  --EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK---------------NNT 503
              +           L  L     S D  DL+ L       ++                  
Sbjct: 527  GYDVAPGGLDTETALTLLASPLGSMDAADLRRLGRALRDEERAAGNRVPPPSGYLLARAL 586

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
              P             A  L   + +    L    T + +     + + W          
Sbjct: 587  AEPERLVTHDPAYARGAQRLGALLRKARELLEGGGTAEEALWTLWNGTPWPGRLERAALR 646

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                      +L         ++      E  +  +       ++  + I  +T+  +  
Sbjct: 647  GGAGGRNADRDLDAVCALFDTAA----RAEERTGGRGALNFLEEVDAQDIAADTLSRRAV 702

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
            +   + ++    S+ L +  +++ G+ EG+WP    +   L         L         
Sbjct: 703  RPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGAL 762

Query: 684  AA----HDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
             A      +  A   R  L+ T      +     SR+L  L             +R    
Sbjct: 763  LAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGT--EPRDVTGRPRRPLAV 820

Query: 739  LDWTRKLDYTTKQPHYK----------------------RPKPFPPLEAQPRTY-SFSEI 775
                 +L  TT  P                         +P        +       +  
Sbjct: 821  ASLVAELRATTVDPGASEALRDAAARRLARLAALTDDEDQPLVPAAHPHRWWGLNEPTRS 880

Query: 776  KQLINDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNIITELIK 821
            +  + D     A     L                +            G + H ++ + + 
Sbjct: 881  EVPLRDRDRPVALSGSALDQLANTCALQWFLGREVKADAPATAAQGFGNVVH-VLADEVA 939

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                    ++       +      +                    FL      ++     
Sbjct: 940  SGRTAADLDVLMERLDSVWDGLVFDAPWKSQQEKDHAR--AALERFLRWHVMDRAGRTPT 997

Query: 882  FVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLS 938
                   + +E+    + + G  DR++    G   + D+KTG   P K+       PQL+
Sbjct: 998  ASEHDFDVTLEAGEYAVRIRGSMDRVEQDAEGRAYVVDFKTGKGAPTKDEVAAH--PQLA 1055

Query: 939  LEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL--KN 993
            +   A++ G+  ++             ++L+Q        +   K  A E    +     
Sbjct: 1056 VYQLAVREGAVDEVFDGRRPDAGGAELVQLRQPAPKKEGGDALPKVQAQEPLSGAWVSDL 1115

Query: 994  LIEIVTLLQNG 1004
            L      + + 
Sbjct: 1116 LATAAGRVLDE 1126


>gi|260425185|ref|ZP_05779178.1| putative ATP-dependent nuclease subunit B [Dialister invisus DSM
            15470]
 gi|260404426|gb|EEW97973.1| putative ATP-dependent nuclease subunit B [Dialister invisus DSM
            15470]
          Length = 1028

 Score =  223 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 132/1028 (12%), Positives = 265/1028 (25%), Gaps = 187/1028 (18%)

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
             A+NL ++   ++        LH     + G         L +  K + + L      S 
Sbjct: 9    FAENLMNLFHQLDMFCISETALHDASLAEEGTPLGRKLADLSLLYKNYHDYLHTR--FSY 66

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
             G    L+  E        +  I I G  G  P   R++S + +          L     
Sbjct: 67   EGSLFDLLAGEIPKSEILRRSRIWIDGFNGMTPQKIRIVSALIHTAEEVTFTLPL-PDAK 125

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              + N I  +  N+ +  +    H                 D   L  +      R   +
Sbjct: 126  EGLSNEIFARPANLYALLSEKEPHF----------------DSVTLPEMKRFRCPRLRCL 169

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLD 383
            +  +     S                     + ++ A +   EA  I+  +    R    
Sbjct: 170  AADYFQNVPSPCPLPKETSPVPE------KGIHIVSAPDSHAEADFISRRILSLVRDKNL 223

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI------ 437
              +    L+ +       ++   +R+GI +      P++      +L  LL+ I      
Sbjct: 224  RWRDILVLLRSADTYTDPLERSFSRYGIPVFTDEKQPMNNHPLVMLLDGLLHFIKAESRG 283

Query: 438  -FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
              +      I  ++K  +      +       + LE   L+ +          +    R 
Sbjct: 284  KNRGFTREHIFRILKTEIFPSFPTD-----MIDKLENYVLKYHIRFSTWQKPWAFRDYRS 338

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS-ISDWT- 554
              Q+         ++ +      A    + +L  + P +       S     + +  W  
Sbjct: 339  IDQEPAPLSDKEITKQNT-----ANTWREKVLSLLNPFLAGWKEALSAEDKCAFLYRWLT 393

Query: 555  -KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
             +     L      E  K       +  K + SL  +I+           E   I+T  +
Sbjct: 394  EQQIPETLSVWDELEFEKTKKRPHLQVWKKVLSLLDEIVHVTGKDILPEEELCGILTDGL 453

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM----- 668
               T          + +             + + G  EG +PK    + F +        
Sbjct: 454  SALTFSMIPPTLDHVTVTSMDRGYAAEAKVVFIPGALEGSFPKKIDDSGFFTETEKQVLL 513

Query: 669  ---QSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRS-LRENNIPTIASRWLQRLLVLG 723
               + +L     E    +  + +         L  +      +      S  L+RL  LG
Sbjct: 514  KSARINLGNNLMELVQEEQFYTYLALTRASDALYLSYPAAAADGSAAEPSFLLERLKALG 573

Query: 724  ---------GTDFFDNLKK-------------------RGQCYLDWTRKLDYTT------ 749
                         + +                      R     +W    D+        
Sbjct: 574  YYTENMEILPPSPYHDDPSFFANPNQALSLLPEILRNGRPSPTGNWAALKDWAEGNEYRE 633

Query: 750  --------------KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                               K       ++      S ++++   + PY  + R  + ++ 
Sbjct: 634  LMESKLAGLRYQNTAARLPKMLARKLFMKGGRFYGSVTKLQNYRSCPYQYFLRYGIGIEE 693

Query: 796  IPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEK 845
                  + D  D G   H  I +            ++  ++   +I+  + + I    + 
Sbjct: 694  RNT--GEADYLDYGNYLHAGIHQFGEILKSQNRQWRQATDEEIEKISEDITEKITPRIKA 751

Query: 846  ENLPPHIDIIWRHL-----FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG---IH 897
            + L       +        F +    F +     QS  + + +     + I +       
Sbjct: 752  DALSSDQSAKYTRRVLDQTFRRALQRFRQW--SRQSGFDTLDMEKEFYLRISASPTDSFT 809

Query: 898  LTGFADRIDLLKSGFV-DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            LTG  DR+D    G    + DYKTG          + +  QL     AL           
Sbjct: 810  LTGKIDRVDT--DGRYAAVCDYKTGSPKLSLNEIMEGLSLQLITYLLALSKT--KDTKDL 865

Query: 956  KVANLFYIRLKQKFKIDCITNDK------------------------------------- 978
              A + YI L  + K   +  +                                      
Sbjct: 866  LPAAMMYIYLHGRPKSISVPPNGIPHPKGKENTNGIFLNDPDVLRTLDSQSGTDDGFIGV 925

Query: 979  ---------------KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
                                + L   + K LI +   L++GE         +        
Sbjct: 926  SYVKDGSVKKTSPVLTAEEFEALKALTEKILIRLYNRLESGEIAIHPVKNGTLSPCSYCP 985

Query: 1024 YDHLARVA 1031
            Y  + R  
Sbjct: 986  YRSICRFD 993


>gi|266620645|ref|ZP_06113580.1| ATP-dependent nuclease subunit B [Clostridium hathewayi DSM 13479]
 gi|288867732|gb|EFD00031.1| ATP-dependent nuclease subunit B [Clostridium hathewayi DSM 13479]
          Length = 1159

 Score =  223 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 127/941 (13%), Positives = 255/941 (27%), Gaps = 117/941 (12%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
                 L  ++  +       + L A   E          + + +  K + E + +   ++
Sbjct: 117  GFIGQLKSMLSELYQYGITPDMLEAKIPETTSPMLRQKLEDISVIYKAFQEYIRDRYITT 176

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                   ++              I + G TG  P   RL+     +    +V   +D  +
Sbjct: 177  EEIL--DVLCRHLPESKLIRDSVITLDGYTGFTPVQYRLLDLFLRYSRRVVVTVTVDPAV 234

Query: 267  PTAIWNTITEKS-----TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            P      + +            +      H +  L  +LD     R   +R      E  
Sbjct: 235  PERGKRGVQDLFYMSCEMIDKLNALARQNHVKRELDIVLDEHPAVR--YRRGAKRRAEQE 292

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC-FSDVALIEADNEREE----AISIAI 376
             R    + +  P  ++       L      +      ++ L++A N  EE       I  
Sbjct: 293  ARVERKALTVSPASSALDFLEQNLYRYSGRVYSGKAEEIRLVQAVNPAEEISCVVREIGK 352

Query: 377  ALRMSLDENKKKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
             LR       +  A+IT D       +  +     I   +     +       ++ + L 
Sbjct: 353  MLREGYR--YRDMAVITGDIGSFAGELIHQFDASEIPYFLDDKKSILKNPMVELVRAALE 410

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             I K   +  +   ++  L      E+ L R +N +  + +RG+K      +       R
Sbjct: 411  TIQKDFSYETMFRYLRTGLVVKPEDERKLDRLENYVIAMGIRGHKRWNTPWEG----WYR 466

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                 N   +   +  +            +      T          +      +     
Sbjct: 467  GGRDLNLEELNQLREEIMAPLTAFIEAFREEGRTVRTMSEAVVRLLEALSVEEKLLARES 526

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                        +     +  + +    +  L  ++       K +  E+ +I+      
Sbjct: 527  AFQE--------QGEFGLSKEYGQVYGLVVDLMDRLARLLGEEKVSRREYAEILDAGFSE 578

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-- 673
              V         + +     +RL +   L   G+N+G+ P+    +   +   +  L   
Sbjct: 579  IKVGLIPAAVDRIVVGDITRTRLDHIKILFFIGVNDGIVPQKKENSSLFTDKEREFLGSH 638

Query: 674  ----LKTAEKYIGQAAHDFEMANGTRH--LIYTRSLREN-NIPTIASRWLQRL------- 719
                  T      +      +A       L  + S  +        S  L  L       
Sbjct: 639  HIELAPTVRVESFRQRFYLYLALTKPEERLYLSYSAMDASGKSLRPSILLGELKKLFPQL 698

Query: 720  -------LVLGGTDFFDNLKKRG--------------------------QCYLDWTRKLD 746
                    V G        + R                           +   +   KL 
Sbjct: 699  TAVAASDEVAGIPFSIREARGRLTRGLRNYGISREDSEFLELFRHFMMNEEQRESVEKLV 758

Query: 747  YTTKQPHYKR---PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                  + +R         L       S + ++Q  +  YA +    L+L      + + 
Sbjct: 759  DAAFYAYEERGIGKMAAKALYGTVLGGSVTRLEQYASCAYAHFLNYGLELAERQ--QYEL 816

Query: 804  DRTDRGTLFHNIITELIKKRINK-------NTPEINHLMKQIIDSHFEKEN---LPPHID 853
               D G LFH+ I    K+   +          E   L+  ++    E+     L     
Sbjct: 817  AAMDIGNLFHDSIDLCFKRMKEQGGDWKTIGEEERKALVHGVVTEVTEEYGNTILKSSAR 876

Query: 854  IIWRHL-FHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIESIG---IHLTG 900
              W      KI+    +   E+  +     +   +          M I       +HL G
Sbjct: 877  NAWLARKVEKITDRTIWALAEQLKKGDFTPVGFEVSFSAADNLKAMKIPLSEAEALHLKG 936

Query: 901  FADRIDLLKSGFVD---ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
              DR+DL +        I DYK+G            +  QL +   A       +   + 
Sbjct: 937  RIDRMDLCEDEEHIYVKIIDYKSGGTSFDLTALYYGLQLQLVVYMDAALEMEERRNPDKT 996

Query: 957  V--ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            V  A +FY  +      D +   +   S + +  + LK L 
Sbjct: 997  VIPAGIFYYNIN-----DPVIEREGDMSPEAIDRRILKELR 1032


>gi|256831951|ref|YP_003160678.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
 gi|256685482|gb|ACV08375.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
          Length = 1059

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 130/988 (13%), Positives = 289/988 (29%), Gaps = 83/988 (8%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+VE  R+     +    V +   T+     LR+   ++         I ++   +   
Sbjct: 37  HTMVELVRHAVHRGVSTERVLVLAATRHLASVLRTRITQVIDV-PVRGAIARTAPALAYS 95

Query: 88  KFTADLLLS-YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
             +A        L   ++  ++   LA+++      L        P  P S+P    +  
Sbjct: 96  LLSAHAAAQSQPLPRLITGPEQDHLLAQILAGHAQGLVP-----APAWPPSVPPQTLSLR 150

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA-- 204
                L D+   +        +L  L        W  AA  L           ++ +   
Sbjct: 151 GFRDELRDLFMRVAEHGLTSGELFELGQRHERPDWCAAAQVLAEYDTVVELSSMQPDVGR 210

Query: 205 -SSPVGYQIALMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
              P     +     +      + T   +I+  +     AT  L+  +    +GA ++  
Sbjct: 211 RDDPARIVSSAADILSHWDTGGRPTYDLVIVDDAQEMTAATVALLQVLHR--DGARIVMA 268

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE-- 319
            D  +    +   + +  N  +   T           L           +R+  V++   
Sbjct: 269 GDPDMTVQGFRGASPRHLNQATFPRTAPGGFAAERLTLSTVWRSHPAVRERVREVTSAIA 328

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
             G       +    + +        + K   + +    V    A +   E  +I   LR
Sbjct: 329 SAGIVAHRRATSRHVNRAQDPQASPPDEKPTTVSRTQPGVEAHLAPSIHVETSAIVNTLR 388

Query: 380 MSLDEN---KKKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLN 435
               +        A+I       +R++  L R  + + +    + L        L  +L 
Sbjct: 389 HWHIDEAIAWSSMAVIARSTAHLQRIRRALERAQVPVTVLGTDVALRDEPAVRGLLDVLA 448

Query: 436 AIFKLN-DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                  D   +  +++            + + +  L    LR             L++D
Sbjct: 449 LARDDTIDLDLVLRVLQGVYGG--LDSLGIRQLRRHLRSAELR----QDGARTSDELLID 502

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            +AT +++ H       ++         ++      +          ++     ++ D  
Sbjct: 503 LMATIRDHGHHDIPPHHVAAAAIGRLTAMIQAACTVMQ-----GHTHDAQTALWAVWDAA 557

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           ++  T       D           +    L       ++              I  + + 
Sbjct: 558 QVAPTWRHIALSDSPASGRAHDDLDAVMALFRSAETHVDRMPDPSVE-SFIAFIEAQDLP 616

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ----- 669
            +++  + +    + +L    +    +  +I+  L +G+WP  T ++  L  +       
Sbjct: 617 ADSLAIRNQSDHVVSLLTPQAAAGRQWQRVIITALQDGIWPNLTLRDSLLGSLHLVDILT 676

Query: 670 ---------SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT------IASR 714
                     D   +T   +    +    ++    H++ T    +   P+          
Sbjct: 677 GRASEDGGPRDSAARTDILHDELRSFALSLSRAQEHVMLTAVDDDEQSPSPFLHLAAPQP 736

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK---------RPKPFPPLEA 765
               L    G     ++    +  L      +   +               P   P    
Sbjct: 737 RPITLGDESGPLDMRSVTTAARAALHQALLREDAEQAHQLASLLAAMEPHTPASDPHTWY 796

Query: 766 QPRTYSFS-----EIKQLINDPYAVYARRILKLDFIPHFKKDPDRT----DRGTLFHNII 816
           Q    S +     E+  L   P  V   +   L +          +      GTL H++ 
Sbjct: 797 QAHPVSTTLPLFHELTTLPLSPSRVDVAQTCSLRWALETSGGQPASGLSQSVGTLIHDV- 855

Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI-IWRHLFHKISHSFLEHEEKIQ 875
                               Q++D  +++ NLPP       R     +     ++   ++
Sbjct: 856 -------AAHAPMGTITQFTQLLDERWDQLNLPPGWPAQRLRSQAQTMVGKLAQYTSMVR 908

Query: 876 SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935
             + ++ V  P  + I      ++G  DR+++L+SG   I D KTG       A   ++P
Sbjct: 909 DDVVEVLVEHPFTVEIAGA--RISGSIDRVEILRSGDARIVDLKTGRT-APTQADTQVNP 965

Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYI 963
           QL +   A+  G+   ++    A+L YI
Sbjct: 966 QLGIYQLAVLHGAVPGVEHTHGADLLYI 993


>gi|298530046|ref|ZP_07017448.1| putative DNA repair protein [Desulfonatronospira thiodismutans
            ASO3-1]
 gi|298509420|gb|EFI33324.1| putative DNA repair protein [Desulfonatronospira thiodismutans
            ASO3-1]
          Length = 904

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 109/816 (13%), Positives = 258/816 (31%), Gaps = 90/816 (11%)

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              L      A+W++   ++    S+     T         ++     R   +        
Sbjct: 123  WNLQDQQDPALWSSPDHRAFLEWSTAFRDYTQG----RGWMEEARHTRHVARMFEKGCLP 178

Query: 320  MYGRSMVISKSFL-PPDTSDMRNTDILENKIPNIQKC--FSDVALIEADNEREEAISIAI 376
                 ++     L P     +   D L  KI +++       + L+   +  +E  + A+
Sbjct: 179  CPAHLVLAGLENLSPVQEHILDVLDGLGCKINHLEPARNDPAITLMPLADREQEMRTCAL 238

Query: 377  ALRMSLD-ENKKKSALITADRNLARRVKLE--------------LTRFGINIDISAGIPL 421
             +R  L+ +++++  ++  D    R+  +               L       D+S G PL
Sbjct: 239  WVRTKLESDHEQRIGVVVPDLYSVRQEIIHTFDAVLHPDTAFEPLPPEKRAYDLSLGRPL 298

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            S          LL+          ++ ++  P  K    E         L         +
Sbjct: 299  SGYPLIRSALHLLDLRLDPLPLETVSAVLNSPFLKGAKSETPARSGLETLLRKTREPQIS 358

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
               ++D  +      +                                    L  ++   
Sbjct: 359  FSFLLDKAADSSKSWSCLVLARS-----------------------------LKAFQARI 389

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                     S W +     LQ++       L +  ++   +  ++   ++      + + 
Sbjct: 390  KELPSTQPPSAWAQDLDLLLQDLGWPGDITLSSHEYQTV-QAFNACLKRLAGLDRVMPST 448

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
             +         I  ET+         + I+G LE+   +FD L + GL +  WP++   +
Sbjct: 449  GMSQATQTLSRILNETIFQPEPPEVRVRIMGMLEAESESFDELWIMGLTDQAWPQSPEPS 508

Query: 662  PFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQR 718
            PFL   +Q  L++   + +  +  A          T   I +   RE ++  + S  L+ 
Sbjct: 509  PFLPVSLQKHLDMPRSSPQHELDYARRIMHRLLQNTSRAILSYPCREEDLELLPSPLLRE 568

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            +         +  +       D    L    +  +++  +  P  +A         ++  
Sbjct: 569  I------SGLEFNEPGLLPDPDPWAGLSPGEQLKYFQNEQAPPLSQASRAPGGTGVLRSQ 622

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT------PEIN 832
               P+  +AR  +    +          +RG + H  +    +   ++            
Sbjct: 623  ALCPFQAFARHRMHARSLEEPVVGLGPPERGIIMHAALEYFWQSCRDQAALLNLTGDRRL 682

Query: 833  HLMKQIIDSHFEKEN------LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
             ++ Q +D    + +      +      + R     +   +L  EE+ Q   +   +   
Sbjct: 683  QMIDQAVDQAIREMHSQRPQTMTSRFQELERERLQDLLQEWLALEEQRQP-FQVQELEKR 741

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAAL- 944
            + ++I  + +++   ADR+D L+ G + + DYK+G     +   ++ ++PQ+ L      
Sbjct: 742  SNISINGLELNV--VADRMDRLEDGRLVVIDYKSGRHAMSEWFKKRPVEPQVPLYTLFCP 799

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK-------YSADELSEKSLKNLIEI 997
            +  +       +     ++ L Q+  I                   DEL +   K+L ++
Sbjct: 800  EHVAGVYFGVVRKGECAFVGLGQEDGIVPGCKGFASHKLTSHYQHWDELLQDWKKSLEKL 859

Query: 998  VTLLQNGEQPFISHLRL-SEKSNIQSEYDHLARVAE 1032
                  G+    + +   S  +  Q + + + R+ E
Sbjct: 860  AQEFMQGQ----ARVDPESPNACRQCDLESICRIFE 891


>gi|239982164|ref|ZP_04704688.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 1079

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 122/1040 (11%), Positives = 255/1040 (24%), Gaps = 140/1040 (13%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE+             + +   ++RA  +LR    +     +   P   +        
Sbjct: 22   TLVESVAARLAAGTPPERILVLTFSRRAAVDLRDRMAQRLSTATA--PRATTFHSFCYAL 79

Query: 89   FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A             +S  ++ + +  L+             ++         +     
Sbjct: 80   VRAHQDADLFAEPLRLLSGPEQDVAVRELLAGQIELGRQGRARVH---WPDELRACLTTR 136

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++          + L           W  AA FL         +     A  
Sbjct: 137  GFADEVRAVLARSRELGLGADALAEFARRGGRPDWSAAASFLAEYLDLLDAQGTLDYAEL 196

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP--------NGAIV 258
                 +   R E    +  T   + +     + PA  RL+  +A +          G  +
Sbjct: 197  VHRAVLLAERPETARQLAETYDAVYVDEYQDTDPAQVRLVRALAGNHGPAVPGAGGGRTL 256

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
            +   D       +                 +                    V  L     
Sbjct: 257  VAFGDPDQSIYAFRGADVNGILEFPETFRRADG--------------APAPVAVLTTGRR 302

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                              + +    +  ++  +  +    V          E  +IA  L
Sbjct: 303  SGAHLVEATRLVTRRMPLTRLSADTVRAHRSLSPARDGGRVEAYTYPTTGAELDNIADIL 362

Query: 379  RMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSL 433
            R +  E      + + L+ +  +    V+  LT  G+ +DI     PL      + L + 
Sbjct: 363  RRAHLEEGVPWGEMAVLVRSGGHTIPAVRRALTSAGVPLDIDGNDLPLRHEPAVAPLLTA 422

Query: 434  -----------------------------LNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
                                          +      D     TL+  PLA     ++  
Sbjct: 423  LRAAATAALQDRAEEEAGPVPEPEPDAGTQDTAPAWLDTETALTLLASPLAALDAADQRR 482

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                   E  A            L   +                +    E     A LL 
Sbjct: 483  LGRALRDEERAAGNPLPPPSDTLLARALA------------EPERLVTHEGYAHGARLLG 530

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
            + + +  T L    + + +       + W +      +           +L         
Sbjct: 531  ELLRRARTLLAKGGSAEEALWELWDGTTWPQRLERSARRGGAAGRNADRDLDAVCALFAT 590

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
            ++      E  +  +       +I  + I  +T+  +  +   + ++    S+ L +  +
Sbjct: 591  AA----RAEERTGGRGALNFLAEIEAQDIAADTLTRRAARPDAVRLMTAHRSKGLEWRLV 646

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNL---KTAEKYIGQAAHDFEMA--NGTRHLIY 699
            ++ G+ EGVWP    +   L         L         + +    F +A       L+ 
Sbjct: 647  VVAGVQEGVWPDLRRRGSLLEADRIGRDGLAEPLPPGALLAEERRLFYVAATRAAERLVV 706

Query: 700  TRSLRENNIPTIASRWLQRLLVL-------------------------GGTDFFDNLKKR 734
            T            SR+L  L V                                  L++ 
Sbjct: 707  TAVKAPAEDGDQPSRFLSELGVEPKDVSSRPRRPLSVAALVAELRATTVDPRVSATLREA 766

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--------------YSFSEIKQLIN 780
                L     L     +P      P      +  T               S S + QL N
Sbjct: 767  AAHRLAKLAALTDEDGRPLVPTAHPDRWWGMREPTRSQVPLRDRDAPVVLSGSALDQLAN 826

Query: 781  -DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                  +  R      +            G + H ++ + +         ++       +
Sbjct: 827  TCALQWFLGR-----EVKADAPASAAQGFGNVVH-VLADEVASGRTPADLDVLMERLDSV 880

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IH 897
                  +     +         +    FLE     ++    +       + + +    + 
Sbjct: 881  WDALAFDAPWKSVQEKENAR--QALERFLEWHTLDRAGRTPVASEHDFDITLGAGPYEVR 938

Query: 898  LTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR- 955
            + G  DR++    G   + D+KTG   P          PQL++   A+  G+   +    
Sbjct: 939  IRGSMDRVEQDPRGRAYVVDFKTGKQAPTAAEVAHH--PQLAVYQLAVTEGAVDPLFDGV 996

Query: 956  --KVANLFYIRLKQKFKIDC 973
              +      + L+Q      
Sbjct: 997  RPEPGGAELVHLRQPAPKKE 1016


>gi|328884880|emb|CCA58119.1| ATP-dependent DNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 1088

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 130/1077 (12%), Positives = 262/1077 (24%), Gaps = 153/1077 (14%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE              + +   +++A  ELR       G +    P   +        
Sbjct: 34   TLVEAVAARVAQGTDPERLLVLTFSRKAAVELRDRMAARLGGR--RPPQATTFHSYCYAL 91

Query: 89   FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A  D  L       +S  ++ L +  L+    +        L          +     
Sbjct: 92   IRAHQDAELFAEPLRLLSGPEQDLAVRELLAGHIDLEK---AGLGGIRWPDELRACLTTR 148

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++          + L           W  AA FL          L       
Sbjct: 149  GFADEVRAVLARSRELGLAPDALARFAERVGRPDWKAAAAFLAEYLDV----LDLQGVLD 204

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                    +   AE +   +   I +     + PA  RL+  +A    G +V    D   
Sbjct: 205  YTELVHRAV-LLAEDISLPSYDAIYVDEYQDTDPAQVRLLHALAGGGRGTVV-AFGDPDQ 262

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +            +    +          +  L   R     L   +  +  R  +
Sbjct: 263  SIYAFRGADVNGILDFPTAFGGAD---------VRVLRTARRSGATLLGATRLLAQRMPM 313

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
                        +    +  ++     +               EA +IA  LR +  E+ 
Sbjct: 314  PR----------LPADRVRAHRDLTATRDGGRTEAYTYPTASAEAENIADLLRRAHLEDG 363

Query: 387  ---KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIF---- 438
               +  A++T        ++  LT  G+ ++  A   PL      + L   L A+     
Sbjct: 364  VPWQDMAVLTRAAATLPSLRRALTSAGVPVETDAADTPLRHEPAVAPLLLALRAVAQVAG 423

Query: 439  -----------------------------------------KLNDFMAIATLVKHPLAKF 457
                                                     +         L+  PLA  
Sbjct: 424  GRSARAEGASTTGRPARAEGAGTTGHGAAPGPEPVEPGAATEWLTTETALELLASPLAGV 483

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                  L R   AL               D+                 P   +       
Sbjct: 484  --DPADLRRLGRALRDEERAAGTKVPAPSDV---------LLTRALAEPERLAAHDPSYT 532

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
              A  L   + +  T L    T + +     + + W                    +L  
Sbjct: 533  RGAHRLGKLLQETRTLLADGGTAEEALWVLWNGTPWPGRLERAALRGGPAGRNADRDLDA 592

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                   ++   + +     +        ++  + I  +T+  +  +   + ++    S+
Sbjct: 593  VCALFETAARAEERVGGRGVLNF----LEELDAQDIAADTLTRRHTRPDAVRLMTAHRSK 648

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA----HDFEMANG 693
             L +  +++ G+ EG+WP    +   L         L          A      +  A  
Sbjct: 649  GLEWSLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEERRLFYVAATR 708

Query: 694  TR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             R  L+ T            SR+L  L             +R         +L  TT  P
Sbjct: 709  ARNRLVVTAVKAAAEDGDQPSRFLSELG--AEPKDVPGRPRRPLAVPALVAELRATTVDP 766

Query: 753  HYKRPK-----------------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                                         P    +     +  +   + + D     A  
Sbjct: 767  DASPALRDAAAQRLAELAALTDEDGQPLVPAAHPDRWWGLFEPTRGPEPLRDRDRPVALS 826

Query: 790  ILKL--------------DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
               L                +            G + H ++ + +         ++    
Sbjct: 827  PSSLDNLVSTCSLQWFLGREVKAAAPATAAQGFGNVVH-VLADEVASGRTPADLDVLMAR 885

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
               +      +                    FL      +             + +E+  
Sbjct: 886  LDSVWDALAFDAPWKSAQEKQHARV--ALERFLSWHVMDRGGRTPAASEHGFDVTLEAGE 943

Query: 896  --IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
              + + G  DR++  + G   + D+KTG   P K+       PQL++   A++ G+  ++
Sbjct: 944  YEVRIRGSMDRVETDEHGRAYVVDFKTGKSAPTKDEVAHH--PQLAVYQLAVREGALDEV 1001

Query: 953  DCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL--KNLIEIVTLLQNG 1004
                  +      ++L+Q        +   K  A E        + L      + + 
Sbjct: 1002 FDGRRPEPGGAELVQLRQAAPQKEGGDALPKVQAQEPLAGEWVGELLATAAGRVLDE 1058


>gi|134097673|ref|YP_001103334.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910296|emb|CAM00409.1| possible ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL
            2338]
          Length = 1051

 Score =  221 bits (563), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 131/1024 (12%), Positives = 272/1024 (26%), Gaps = 128/1024 (12%)

Query: 24   ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT-----GKKSTILPII 78
             L+     +  R+  + P    +V +   ++RA   +R+E          G ++   P++
Sbjct: 42   TLIAEVAADRIRHGGVAPE---NVLVLCASRRAAARMRAEITRRLTASDDGLRTAPEPLV 98

Query: 79   KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
            +++            +      P      RLL       + R+ L   +++  P+ P   
Sbjct: 99   RTVHSYAFAVLRLQAVREQMPAP------RLLNGPDQDALVRDLLQGDLEEGAPDWPER- 151

Query: 139  PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                 +    A+ L D++          + L  L        W+ A  F           
Sbjct: 152  LRPALSVPGFAEELRDLLLRAAERGVGPDGLVELGRRHDRPEWVAAGRF----------- 200

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                        Q   +                +  S      T   +  V       ++
Sbjct: 201  ----------ARQYEQVTLLRGGGDAAGMDAAELVSSALLAFDTDPDLLHVERQRVRHLL 250

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
            +       P   W      ST              ++            +       V  
Sbjct: 251  VDDAQHLDPQQYWLLQRLGSTAAEFVLAGDPDQAVFTFRGADPGSVRDADPDGGNTVVLT 310

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
              +  S  +  +        +                   V +    +E +EA  +A  L
Sbjct: 311  VDHRMSKAVRAAVQRLAER-LPGAGPQRRLAEPEDCPGGSVQVRLHASEAQEAAWVADQL 369

Query: 379  RMSLDENKKKS---ALITADRNLARR--VKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            R +   +       A++     L+     +  L      +     +PL+       L +L
Sbjct: 370  RRAHLLDGVPWSDMAVVVRSTGLSLPVLRRALLAASVPLVLPVDDVPLAQRTAVRPLLTL 429

Query: 434  LNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            L    +    D  + A L+   L           R       +A  G+++S D+      
Sbjct: 430  LRCAGRPQALDPDSAAELLASSLGGADPLALRRLRRGLRRLELAAGGSRSSGDL------ 483

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
                              + L +     A  +   +      +   ++ +         S
Sbjct: 484  -------LVEVLRGDDALAALDDSSAGPARKVAHLLKVAREAVDDGRSVEEVLWRVWQAS 536

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
               +  +T  +   +   +   +L         ++ +   +               +  +
Sbjct: 537  GLQQRWLTVAERGGITGAQADRDLDAVVSLFEAAAQYVDRLPGADVAGFADY----LTGQ 592

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-- 669
             I G ++ P   K + + +L    +    ++ + + G+ EG WP    +   L       
Sbjct: 593  QIAGSSLAPSAPKENAVSVLTAHAAAGQEWEVVAIPGVQEGTWPDLRLRGSLLGVERLVD 652

Query: 670  -------SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL-- 720
                   +D    TA     +       A+  R  +   ++R  +     SR+L  L   
Sbjct: 653  VLSGVDAADRVSATAPLLAEERRLLLVAASRARSGLLVSAVRGEDE--QPSRFLDELEGV 710

Query: 721  --VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------------------PKPF 760
                   +      +RG    +   +L                             P   
Sbjct: 711  VSDPDSAERPIARPERGLVLAELVGELRQVVCDVQAPARRRERAAAQLARLADAGVPGAH 770

Query: 761  PPLE---------------AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
            P                   +P   S S +  L   P    A R                
Sbjct: 771  PDTWYGLPPSSCQSPLVEGDEPVRVSPSTVDTLSKCPLRWMAERHGG------QDTAELA 824

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
            +  GTL H     L++   +  T E  H          +            R    ++  
Sbjct: 825  SVTGTLVHA----LVQAAADGATEEQLHRALDEAWESVDAGAPW--FSRKERARVERMIE 878

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIG----IHLTGFADRIDLLKSGFVDITDYKTG 921
            SF       ++ + ++ V     + IE       + L G  DR++    G   + D KTG
Sbjct: 879  SFQAWLVASRAELTQVGVERDLDLTIEGRDGGPSLRLRGRVDRLEADGEGRPVVVDVKTG 938

Query: 922  DNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
              P  K  A++   PQL++   A   G+F+     +      + + +         ++ +
Sbjct: 939  KTPVSKNDAEEH--PQLAVYQLAAALGAFNDGAWTEPGGARLLYVAKPEARTGAATERVQ 996

Query: 981  YSAD 984
               D
Sbjct: 997  RGLD 1000


>gi|262203379|ref|YP_003274587.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
 gi|262086726|gb|ACY22694.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
          Length = 1129

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 124/1077 (11%), Positives = 277/1077 (25%), Gaps = 149/1077 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI------------TGK 70
             AL+    V   R   + P     V +   +++A   LR E                   
Sbjct: 68   TALIVDAAVARLRAPDVEPES---VLVLASSRQAAATLREEITRRVLAGSDATDGRRALG 124

Query: 71   KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
             +   P+++++                N  P      RL+  +   ++ R  L   I+D 
Sbjct: 125  GALREPLVRTVHSYAFAILRLQASAHNNPPP------RLITGSEQDVVLRELLAGDIEDG 178

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                P             A+ L D++          E+L AL        W+ AA     
Sbjct: 179  AGYWPA-HLRPALGTDGFAQALRDLMMRAAERGAGPEELAALGRRHRRPEWVAAAR---- 233

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
            A   + + ++              +  EA            + GS  S  AT   +    
Sbjct: 234  AYAQYEQNMLLRG----------AVGLEAPGASAPAVDAAELVGSALSAFATDPELLIAQ 283

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----KLLDFLDIK 306
                  +++       P A        +   ++     +    +       +  D L   
Sbjct: 284  RARIRHLLVDDAQHLDPQAAQLVKLIGTGTTSTLIAADTDQSVFGFRGADPRFADDLAEP 343

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
              D   L + +     +   + +           +         +       V +    +
Sbjct: 344  GSDRDILLDTNFRSEAQIERVGRVLASRLPGARPHPYPQAP-AESPATGAGGVQVRVFGS 402

Query: 367  EREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISA-GIPL 421
              +EA ++A  LR +   +     + + ++ +       ++      G+ +   A G+PL
Sbjct: 403  SAKEATAVADLLRRAHLFDGVPWSRMAVIVRSVSLALPPLRRAFRSAGVPLTTPASGLPL 462

Query: 422  STTLHSSILTSLLN--------AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
                    L  +L         A     D    A L+  P+           R       
Sbjct: 463  HRQRAVVALMLVLRVVAARTTPAQADDFDIEDAAALLSGPIGAADPGAMRRLRRGVRRSS 522

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                 +    D       +    +   +      ++  L++ ++     ++D +      
Sbjct: 523  EKRGDDGAQQDS------LTALRSAILDPLLAARYREDLTDAERAPLDRVLDVVAAAEKV 576

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
                +  + +       +   +              +   +L         ++ F+  + 
Sbjct: 577  HTAGRGLEETLWAGWQATGLERRWAASAVRGGPGGEQADRDLDAVMAMFEAAANFADTLP 636

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                       ++  + +L      +     S ++ +L    +    +D + + G+ +G+
Sbjct: 637  AAG-----PAGFVHYLGQLQIPRDSRTATAASDSVTVLSAHAAVGREWDVVAVAGVLDGL 691

Query: 654  WPKNTAKNPFLSRVMQSDL-----------NLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
            WP   ++   L+     DL             + A     +           R  +   +
Sbjct: 692  WPSLRSRGSVLATGQLVDLLDGVDPDAVDKLARPAAAIADERRLLLVACTRARRRLLVTA 751

Query: 703  LRENNIPTIASRWLQRLLVLG--------------GTDFFDNLKKRGQCYLDWTRKLDYT 748
            + + +     SR++  +                       D    R          L   
Sbjct: 752  VEDGSGEASPSRFIGEIADALAGSTQDADADTPAPEELPLDPGVDRVLSLPSLVATLRSV 811

Query: 749  TKQPHYKRP------------------------------------KPFPPLEAQPRTYSF 772
                  + P                                     P    +      S 
Sbjct: 812  VTAGVGEMPDERTMAAARLLARLADADVPGAHPRDWYGLAAPSSDAPLWTPDDGAVVLSP 871

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            S +  L          R            D      G+L H     L++    +  P   
Sbjct: 872  SNVDALTRCSLRWLLERNGG------RDGDGTPALTGSLVH----TLVQAVAGELDPTEV 921

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                + I    +          +       +  +F E     +S ++++ V +     I 
Sbjct: 922  TEALRAIWDRVDTGAGWYSARELE--RAESMLVNFREWLRISRSDLDEVGVELAVDATIP 979

Query: 893  SIG----IHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG 947
            +      + L G  DR++   +G   + D KT   P  K  AQ     QL+    AL  G
Sbjct: 980  ATPDDPAVRLRGRMDRLERDGAGRPVVVDVKTAKTPISKADAQDHA--QLAAYQVALAHG 1037

Query: 948  SFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
              +  D      +      + +    +        +   + EL ++ +  +      
Sbjct: 1038 GLTGADDAVVSAEPGGARLVYVSSANRNSGAAERVQAPLSPELLDEWITVVRHAARA 1094


>gi|291006368|ref|ZP_06564341.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 1058

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 131/1024 (12%), Positives = 272/1024 (26%), Gaps = 128/1024 (12%)

Query: 24   ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT-----GKKSTILPII 78
             L+     +  R+  + P    +V +   ++RA   +R+E          G ++   P++
Sbjct: 49   TLIAEVAADRIRHGGVAPE---NVLVLCASRRAAARMRAEITRRLTASDDGLRTAPEPLV 105

Query: 79   KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
            +++            +      P      RLL       + R+ L   +++  P+ P   
Sbjct: 106  RTVHSYAFAVLRLQAVREQMPAP------RLLNGPDQDALVRDLLQGDLEEGAPDWPER- 158

Query: 139  PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                 +    A+ L D++          + L  L        W+ A  F           
Sbjct: 159  LRPALSVPGFAEELRDLLLRAAERGVGPDGLVELGRRHDRPEWVAAGRF----------- 207

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                        Q   +                +  S      T   +  V       ++
Sbjct: 208  ----------ARQYEQVTLLRGGGDAAGMDAAELVSSALLAFDTDPDLLHVERQRVRHLL 257

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
            +       P   W      ST              ++            +       V  
Sbjct: 258  VDDAQHLDPQQYWLLQRLGSTAAEFVLAGDPDQAVFTFRGADPGSVRDADPDGGNTVVLT 317

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
              +  S  +  +        +                   V +    +E +EA  +A  L
Sbjct: 318  VDHRMSKAVRAAVQRLAER-LPGAGPQRRLAEPEDCPGGSVQVRLHASEAQEAAWVADQL 376

Query: 379  RMSLDENKKKS---ALITADRNLARR--VKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            R +   +       A++     L+     +  L      +     +PL+       L +L
Sbjct: 377  RRAHLLDGVPWSDMAVVVRSTGLSLPVLRRALLAASVPLVLPVDDVPLAQRTAVRPLLTL 436

Query: 434  LNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            L    +    D  + A L+   L           R       +A  G+++S D+      
Sbjct: 437  LRCAGRPQALDPDSAAELLASSLGGADPLALRRLRRGLRRLELAAGGSRSSGDL------ 490

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
                              + L +     A  +   +      +   ++ +         S
Sbjct: 491  -------LVEVLRGDDALAALDDSSAGPARKVAHLLKVAREAVDDGRSVEEVLWRVWQAS 543

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
               +  +T  +   +   +   +L         ++ +   +               +  +
Sbjct: 544  GLQQRWLTVAERGGITGAQADRDLDAVVSLFEAAAQYVDRLPGADVAGFADY----LTGQ 599

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-- 669
             I G ++ P   K + + +L    +    ++ + + G+ EG WP    +   L       
Sbjct: 600  QIAGSSLAPSAPKENAVSVLTAHAAAGQEWEVVAIPGVQEGTWPDLRLRGSLLGVERLVD 659

Query: 670  -------SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL-- 720
                   +D    TA     +       A+  R  +   ++R  +     SR+L  L   
Sbjct: 660  VLSGVDAADRVSATAPLLAEERRLLLVAASRARSGLLVSAVRGEDE--QPSRFLDELEGV 717

Query: 721  --VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------------------PKPF 760
                   +      +RG    +   +L                             P   
Sbjct: 718  VSDPDSAERPIARPERGLVLAELVGELRQVVCDVQAPARRRERAAAQLARLADAGVPGAH 777

Query: 761  PPLE---------------AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
            P                   +P   S S +  L   P    A R                
Sbjct: 778  PDTWYGLPPSSCQSPLVEGDEPVRVSPSTVDTLSKCPLRWMAERHGG------QDTAELA 831

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
            +  GTL H     L++   +  T E  H          +            R    ++  
Sbjct: 832  SVTGTLVHA----LVQAAADGATEEQLHRALDEAWESVDAGAPW--FSRKERARVERMIE 885

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIG----IHLTGFADRIDLLKSGFVDITDYKTG 921
            SF       ++ + ++ V     + IE       + L G  DR++    G   + D KTG
Sbjct: 886  SFQAWLVASRAELTQVGVERDLDLTIEGRDGGPSLRLRGRVDRLEADGEGRPVVVDVKTG 945

Query: 922  DNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
              P  K  A++   PQL++   A   G+F+     +      + + +         ++ +
Sbjct: 946  KTPVSKNDAEEH--PQLAVYQLAAALGAFNDGAWTEPGGARLLYVAKPEARTGAATERVQ 1003

Query: 981  YSAD 984
               D
Sbjct: 1004 RGLD 1007


>gi|220904251|ref|YP_002479563.1| hypothetical protein Ddes_0978 [Desulfovibrio desulfuricans subsp.
            desulfuricans str. ATCC 27774]
 gi|219868550|gb|ACL48885.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
            desulfuricans str. ATCC 27774]
          Length = 1000

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 126/1080 (11%), Positives = 279/1080 (25%), Gaps = 154/1080 (14%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
                PF   +   L   T                S  + VP  R  + +   +       
Sbjct: 10   PWQRPFLPALKEHLHEITGGRP-----------GSALVIVPHNRPWRYMAQLYAA--DGY 56

Query: 72   STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            + +LP +  L D V     +      +    +            + +    +  + ++  
Sbjct: 57   TGLLPKVLPLADAVGIWRASGSAAPLHTANTLDR----------VALLHACVNTLSREDE 106

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
              +     +  A  +     LA +++ +  +  +  D+     ++           L   
Sbjct: 107  TLAARFARMDMALFLPWGLRLAALLEEMYGQMVEIRDIAH-VEDEVAAPAAALLGALGRI 165

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAE---HLMKGTKGPIIIAGSTGSIPATARLMST 248
            S  +   L+E N ++P    + L R +A     L      P+++AG          L+  
Sbjct: 166  SHAYESALLEKNWTTPGLDLLNLARGDAPIPPLLQPQDGRPVLVAGFYLLTGGEDHLLRC 225

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +     GA +    D  +          +                  LA  +     +  
Sbjct: 226  LWQA--GADICLHGDPALAENSRPHWACEE-----------------LAAWMRRWKARAA 266

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
               +L              +        + +       +      +  +      +    
Sbjct: 267  TALQLDEDEKNHRPEYRFFAGYDCHSQLAALHRDLKRADPTDGTAEKTTRPENDGSPIPV 326

Query: 369  EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            E               +   +A++  D +L   V   L     ++++S G PL  +  + 
Sbjct: 327  E---------------SGHSTAIVLTDSSLLMPVLHHLP--HKDVNVSMGYPLERSPLNR 369

Query: 429  ILTSLLNAIF-----KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
            +L  LL             +  +   ++HP                              
Sbjct: 370  LLDGLLRLQATRSDEGRYYWRHLLQCLRHPYVNMLRTRDA------------------YG 411

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
              + L+  +       +  T        + E   +L   L   + + +  LV        
Sbjct: 412  QPLLLRDALRPLERIIREGTRFVDLDEVILECRGQLPEALAQLLEETLEALV---RAPAG 468

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                  ++       + L+    D  R  P            ++        +       
Sbjct: 469  AATTEDMARVLHGLCSFLRCRGDDLWRHFPLDAEAMYRLMRQTVPVLRENLLARTPFPLT 528

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                +   ++  E V  + +  + L +LG LE+RLL+F  + +    +   P N A++P 
Sbjct: 529  TLHGMTREVLGQERVPFEADPLTGLQVLGMLETRLLHFGRVFIVDATDDRLPGNPAQDPL 588

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSL-----RENNIPTIASRWLQ 717
            L   ++  L L  + +    AAH         + + +            +     SR+++
Sbjct: 589  LPDSLRQVLGLPDSRRRERAAAHTLYRLCAGAQEVSFFWQEGISRSSLFDGKKSRSRFVE 648

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ---PRTYSFSE 774
            +LL          L            ++                            S + 
Sbjct: 649  QLLWQEELARGAVLAPGEPPLETAVCEVRAAASGEKQLERSADMNDALARLLREPLSATR 708

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEI 831
            +   +  P     + +  L       +  D    GT  H+ +  L +  +N   ++    
Sbjct: 709  LDVYLQCPLRFAWQYLCGLRPPKEINEGDDPAAVGTCIHDTLKALYEPYLNKTVRSGDIS 768

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH-SFLEHEEKIQSSIEKIFVNIPAKM- 889
               ++       E   L   +      +  + +    +   E   + +  + +    K+ 
Sbjct: 769  AETVRARFYEQLEAHGLRKLLPADSCLMLEEAAPMRLMRFLENQPADVTIMALEKELKVP 828

Query: 890  -AIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-------------------------N 923
              +        G  DR+D    G   + DYKTG                           
Sbjct: 829  LRLAGRDYAFVGAMDRVDWR-DGLFYVLDYKTGGIKKLDGSLWTDLAFFSRAGQLCDTLT 887

Query: 924  PKKETAQKLI---------------DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
            P +E  +  +                 QL    A  +A          +++   + L+  
Sbjct: 888  PAQEAGESHLQQLEALFSQLRERLPSLQLPCYLAMAQASGM-----TPLSDAALVELRDD 942

Query: 969  FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             +   +         D         L  +  L       F +      K      Y  L 
Sbjct: 943  GREHPLFGGLVDEDLDAALGFCRTAL-ALPLLHMEYSPCFAARPD---KHCRWCPYAGLC 998


>gi|311898255|dbj|BAJ30663.1| putative UvrD/REP helicase family protein [Kitasatospora setae
            KM-6054]
          Length = 1090

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 117/1059 (11%), Positives = 264/1059 (24%), Gaps = 117/1059 (11%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE       +      V +   +++A  ELR       G  +   P   +        
Sbjct: 48   TLVEAVARRVADGTAPERVLVLTFSRKAAMELRDRMTARIGATA---PQATTFHSFCYAL 104

Query: 89   FTADLLLS--YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A             +S  ++ + +  L+        D    +          +     
Sbjct: 105  LRAHQAPEEYAEPLRLLSGPEQDVMVRELLAGGAE---DAKAGVGTIGWPLDLRACLTTR 161

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++           +L           W  AA FL         R V   A  
Sbjct: 162  GFADEVRAVLARSRELGLGERELERFAAGVDRPDWAAAAHFLAEYLDVLDLRGVLDYAEL 221

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 +   R +    ++     + +     + PA  RL+  +A   +G  ++   D   
Sbjct: 222  VHRAVLLAERPDVSARLRERYDVVFVDEYQDTDPAQVRLLRRLAG--DGRDLVAVGDPDQ 279

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +                ++      +      L + R     L   + E+  R   
Sbjct: 280  SIYAFRGADVNGILEFPDAFRHADGRPAEVK----VLRVSRRSGAVLLAATRELARR--- 332

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
                        +    +  ++     +    V +        E  S+A  LR +  E  
Sbjct: 333  -------MPMGRLPADKLAAHRALLPSREGGAVEVYTYPTPGAELDSVADLLRRAHLEDG 385

Query: 385  --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441
                + + L+ A       V+  L   G+ ++I     PL        L   L    +  
Sbjct: 386  VPWGEMAVLVRAGSRTIPAVRRALAAAGVPLEIDGDDLPLREESAVVPLLLALRVCAEG- 444

Query: 442  DFMAIATLVKHPLAKFGFPEKY--LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
               A+   + H L             R          R    +     +     + I   
Sbjct: 445  -PGALTADLAHTLLTGPLAALDGSDLRRLGRTLREEERRALAADGAPGVVRPAEELIREA 503

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
             ++  +                 L+  + + +    + +              W +    
Sbjct: 504  LDHPELLALLDTPYARRAHELGTLLRKVRELLAGGASAEDALWELWDGS--RRWRERLER 561

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                          +L         ++   + +              ++  + I  +T+ 
Sbjct: 562  AALRGGPAGRNADRDLDALCALFETAARAEERVTGHRG---ALDLLAEVEAQDIAADTLH 618

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
             +  +   + ++    S+ L +  +++ G+ EG+WP    +   L         L     
Sbjct: 619  VRAVRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLT 678

Query: 680  YIGQAA----HDFEMANGTR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
                 A      +  A   +  L+ T            SR+L+ L           + +R
Sbjct: 679  PAALLAEERRLFYVAATRAKDRLVVTAVKAPAEDGDEPSRFLRELYRETLDPRTGRVLER 738

Query: 735  GQCY----------------------------LDWTRKLDYTTKQPHYKRPKP------- 759
                                             D + +L     +               
Sbjct: 739  TPRVKVADVTARPRRPLSVPALVAELRAVTVDPDRSPQLRRAAAERLATLAAATDEDGRP 798

Query: 760  ---------------------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                                       QP   S S ++QL       +         +  
Sbjct: 799  LVPAAHPDQWWGLDDPTAAPHPLREPDQPVRLSGSGLEQLETCTLQWFLE-----KDVKA 853

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
                      G + H +  E+   R   +   +   +   +      +          + 
Sbjct: 854  GTTASAAQGFGNVVHALADEVGSGRTPADLAVLMERL-DTVWDALAFDAPWKSTQ--EKG 910

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDIT 916
                    FL      +     +       + ++  G  + + G  DR++   +G   + 
Sbjct: 911  EARAALERFLRWHVLERERAT-VATEHGFDLTLDVGGVAVRIRGSMDRVEADAAGRAYVV 969

Query: 917  DYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK----VANLFYIRLKQKFKI 971
            D+KTG   P  ++  +    QL++   A+  G+   +   +          ++L+   K 
Sbjct: 970  DFKTGKHVPTDKSLPEHR--QLAVYQLAVGNGALDGLPGFEHGAVPGGAELVQLRTPDKK 1027

Query: 972  DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
            D      ++   +E +      L++    +        +
Sbjct: 1028 DPEAPKVQRQLPEESTPWIEDLLVQTAGKVLAERFTPTA 1066


>gi|328907790|gb|EGG27553.1| UvrD/REP helicase [Propionibacterium sp. P08]
          Length = 1093

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 127/1006 (12%), Positives = 261/1006 (25%), Gaps = 127/1006 (12%)

Query: 44   LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            L+ V +   T+ + Q LR+  +      + + P + ++  +                   
Sbjct: 74   LSDVLVLAQTRPSAQALRTALVRRLAG-AHLEPQVMTVHALARRIVA------------- 119

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  +RLL         R  L       +P+       + A     A ++  +   +  E 
Sbjct: 120  SPSRRLLTAPEQEFRMRELLAARDMSDWPDE----LRTCAGTAQFASDVRVMAARLRQEG 175

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
               +DL           W +   FL               A +    +IAL R  A+  +
Sbjct: 176  CDPQDLTDAGVTWGVPEWRVLGPFLADYLDVLDLEGTLDYAEAVHRARIALTRPGADIEV 235

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            +     +I         +  R +S +A      ++    D       +     +      
Sbjct: 236  RSRIKLLICDDVVECDSSQIRFLSQIARCHIPCVLTA--DPDQTIYGFRGAVAE------ 287

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                          +L + +D   +        +         + +S      +   ++ 
Sbjct: 288  --------------RLDEVIDEFPDVSVHHLATNYRNSQHIAEVVESLRTRMPAVPSSSQ 333

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLAR 400
            +      +       VA + A +       IA  LR +   +    +  A++T       
Sbjct: 334  LRRRANHSAVTEDGTVAAVRAPSMTRLVRKIAGTLRHAHVADGVAWRNMAVVTRHGGELG 393

Query: 401  RVKLELTRFGINIDISAGIPLST-----TLHSSILTSLLNAIFKLNDFM-AIATLVKHPL 454
             +   L    I +  S      +     T   + L   +            +ATL+ +PL
Sbjct: 394  IIATVLAAEDIPVLRSRDEHALSDINAVTHIVNALAIAVALASGRQPSDRDVATLLSNPL 453

Query: 455  AKFGFPEKYLSRAKNAL------------------ELVALRGNKNSYDIMDLKSLVLDRI 496
            A       +       L                           N       ++ V  R 
Sbjct: 454  AGIDRSLVHRLETWCRLVRGIDIDWPLLGELGADPMAAVAAERGNERPEDGSRAEVDGRA 513

Query: 497  ATQKNN----THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                       H  +          +   ++V  + +    L +  +   +       S 
Sbjct: 514  EEAGKEGSETAHEAYSVPPGLRALAQPLAMMVQRVQRAADLLRSDASCHEALWALWQGSS 573

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
            WT    +          R L  L    +    +   + I      I+             
Sbjct: 574  WTSSLRSRALAGDSAADRDLDGLCSLFDMADGAQTMAGIAGARRLIEVVR-------QEQ 626

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            I  +  +   E    + ++     +   FD + + GL EG WP +      +     S  
Sbjct: 627  IPADRARESDEDRDGVSVVTAHRVKGREFDVVAVCGLEEGNWPADNHTGSLVRADRWSPD 686

Query: 673  NLKTA----EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--- 725
            +L  A    E    +        +  R  +   ++         S  +  L  +      
Sbjct: 687  SLVAAPGWSENLRAETRLLLVACSRARRQLLLCTVESAEEGKRPSGLVAGLPHVEDHVDS 746

Query: 726  --------------------DFFDNLKKRGQCYLDWTRKL-DYTTKQPHYKRP------- 757
                                     ++   Q  LD  R       +      P       
Sbjct: 747  LNFTSLTELVGELRRVVVDNSELPGVRAEAQALLDDLRVEKHRGRQLVPQADPSTWWCQG 806

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
             P     A     S S I +L+  P   +  R         F+        G+L H I  
Sbjct: 807  APHQADVAGEIELSASHIGELLTCPRRWFMTRRAGASSGSAFQASI-----GSLVHRICA 861

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSFLEHEEKIQS 876
            E +                  ++  + + ++                   F    +    
Sbjct: 862  ENMGHWSLPG-------ALTELEEAWPEIDVTAEWQRNAKLADAKAAVQRFDGWLQSRHR 914

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936
             +    V +   + + S    + G  DR++    G   + D KTG +  +ET +     Q
Sbjct: 915  QLIGTEVRVDGTIEVPSGTARVRGSIDRLERDAEGACYVVDLKTGASQSEETKRSHR-LQ 973

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            + +  A + +G    I  + V+    + L+       ++      S
Sbjct: 974  IGVYQAVVASGGVKTIGPKPVSGAELVHLQIGAGKGKLSPKVDHQS 1019


>gi|333024560|ref|ZP_08452624.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071]
 gi|332744412|gb|EGJ74853.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071]
          Length = 1146

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 122/1086 (11%), Positives = 254/1086 (23%), Gaps = 144/1086 (13%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             TLVE+             + +   +++A   LR       G      P   +       
Sbjct: 66   ETLVESVAARVAAGADPERLLVLTFSRKAAVSLRDRMALRIG--PASAPRATTFHSYGYA 123

Query: 88   KFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
               A      +  P   +S  ++ L +  L+     +     +            +    
Sbjct: 124  LVRAHQEAGPDGTPVRLLSGPEQDLAVRELLEG---ETALAAQGRGRVRWPGQLRACLTT 180

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
               A  +  ++            LH   +      W  AA FL         + V   A 
Sbjct: 181  RGFADEVRAVLARSRELGLDPAALHRFASRTGRPDWQAAAAFLAEYLDVLDLQGVIDYAE 240

Query: 206  SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                  +   R +    +      + +     + PA  RL+  +A    G  +L   D  
Sbjct: 241  LVHRADLLARRPDVAKDLAQAYDAVYVDEYQDTDPAQVRLLEALAG--QGRTLLAFGDPD 298

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                 +                                      V  L            
Sbjct: 299  QSIYAFRGADVNGILDFPDAF--------------RTTGGAPAPVAVLPTARRAARRVLD 344

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                  L    + +    +  ++     +      +    +   E   +A  LR +  E+
Sbjct: 345  ATRALTLRIPLTRLPAAAVRAHRDQLPTREGGGAEVYTCPSPGAETDHVADLLRRAHLED 404

Query: 386  KKKS---ALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441
                   A++    +    ++  LT  G+ +D +    PL        L + L    +  
Sbjct: 405  DVPWGDMAVLLRAGSRLPALRRSLTAAGVPVDTAGDELPLRLEPAVQPLLTALRVTAEAE 464

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY------------------ 483
                     + P        K  S      E   + G  +                    
Sbjct: 465  ARGETPQAGETPPVGQTPAGKGESEPVREGESGPVPGADSGPEAEGEPVPVGEIQPVPVP 524

Query: 484  --------------------DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                                 +  + +  L R+                   D  LA  L
Sbjct: 525  QPSPEPSWIATETAVDLLASPLCGMDAADLRRLGRALRAEERAGGNPVPPPSDVLLARAL 584

Query: 524  VD--------------------HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
             +                     + +  + L    T + +     + + W        + 
Sbjct: 585  AEPERLIAHDAAYAKAARELGLLLARTRSLLAKGGTAEEALWELWNGTRWPARLERASRR 644

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                      +L         ++      E  +  +       +   + I  +T+  +  
Sbjct: 645  GGAAGRNADRDLDAVCALFATAA----RAEERTGGRGALNFLAETEAQEIAADTLSGRTV 700

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
            +   + ++    ++ L +  +++ G+ EGVWP    +   L         L         
Sbjct: 701  RPDAVRLMTAHRAKGLQWRLVVVAGVQEGVWPDLRQRGSLLEADRIGSDGLAEPLTPGAL 760

Query: 684  AA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
             A                L+ T            SR+L  L V           +R    
Sbjct: 761  LAEERRLFYVAATRAADRLVVTAVKAPAEDGDQPSRFLTELGV--EPRHLTVRPRRPLAV 818

Query: 739  LDWTRKLDYTTKQPHYKRPK-----------------------PFPPLEAQPRTYSFSEI 775
                 +L  TT  PH                            P             +  
Sbjct: 819  PALVAELRATTVDPHASPALREAAARRLARLAALTDGDGRPLVPTAHPGTWWGLADETVN 878

Query: 776  KQLINDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNIITELIK 821
            +  + DP    A     L                +            G + H ++ + + 
Sbjct: 879  EVPVRDPAQPLALSASALGQLVDVCALQWFLGREVRAEAPASTAQGFGNVVH-VLADEVA 937

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
               +    ++       +      +                    FL      ++    +
Sbjct: 938  TGRSPADLDVLMERLDTVWDGLAFDAPWKSAQERENAR--AALERFLRWHVLDRTGRTPV 995

Query: 882  FVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLS 938
                P  + + +    I + G  DR+D   +G   + D+KTG   P  +       PQL+
Sbjct: 996  ASEHPFDVTLPAGDHEIRIRGTMDRVDADAAGRAYVVDFKTGKNAPTADEVDHH--PQLA 1053

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
            +   A+  G+   +          + L+ +       + K +       +     L E  
Sbjct: 1054 VYQRAVAEGA---VGPLTPGGAELVHLRLEASKKDPLSPKVQPQEPPEGDWLPDLLTEAA 1110

Query: 999  TLLQNG 1004
              + N 
Sbjct: 1111 ARVLNE 1116


>gi|296448463|ref|ZP_06890345.1| double-strand break repair protein AddB [Methylosinus trichosporium
           OB3b]
 gi|296254015|gb|EFH01160.1| double-strand break repair protein AddB [Methylosinus trichosporium
           OB3b]
          Length = 500

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 149/501 (29%), Positives = 247/501 (49%), Gaps = 19/501 (3%)

Query: 7   NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
           NVF+I P + F      ALL+G ++         PL LA  TIYVPT+RA + L ++   
Sbjct: 5   NVFSIPPGASFLGAFTRALLDGEIIPGL-SRASGPLALAETTIYVPTRRAARALAAQLAA 63

Query: 67  ITGKKSTILPIIKSLGDVVEEKFTA-----DLLLSYNLNPPVSNIQRLLELARLILIWRN 121
                + +LP I  LGD+ E++ +A     ++     L P V+ I R L LA L+L W  
Sbjct: 64  AIETPAALLPRILPLGDLDEQEASALFHAEEIGSDDALAPAVAEIDRRLTLAALVLHWAK 123

Query: 122 KLPDIIK--------DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
            L   I         +  P   L +  SPA+A  LA+ LA ++D    E+   + L +L 
Sbjct: 124 SLRHAIVAIDPLGRIEHDPREMLLVAPSPASACALAEELARLVDEFIIEDVDPKALGSLA 183

Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIII 232
            + +  ++ +   FL+IA + W + L E         + AL+ A+ + L +   +GP+I 
Sbjct: 184 EDAHDRYFAITTHFLRIALEDWPKILKERECIDGATRRKALVAAQIDALTRGAARGPVIA 243

Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
            GSTG+ P TARL++ +     GA+VLPGLD  +  A W  + E      +      THP
Sbjct: 244 LGSTGAQPTTARLIAAIERLETGAVVLPGLDLEMDEASWRRVGE---TSVAREEAAVTHP 300

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
           Q  L +L+  + + R +V+R+G     +  R  +++ +  P D++D+      E    + 
Sbjct: 301 QAMLKRLIGIIGVARAEVRRIGAPPAAIEARGRLLAAALKPADSTDLW-RAFREAHGASF 359

Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
               + V+ IEA +EREEA+++A+ +R +L+   + +AL+T DR +ARRV  EL R+ I 
Sbjct: 360 DAALAGVSFIEAADEREEALALALCMREALETPGRTAALVTPDRMIARRVCAELARWDIE 419

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
           +D SAG PL+ T   ++   +  ++      +  A L+ HPL   G     ++R    +E
Sbjct: 420 VDDSAGRPLAATPIGALARLVAASLEDGVSAVDAAALLAHPLTSLGLGRAEIARIAPLVE 479

Query: 473 LVALRGNKNSYDIMDLKSLVL 493
           +  LR  +     +   +   
Sbjct: 480 IGVLRNVERRPGPLAEMAAAA 500


>gi|23098636|ref|NP_692102.1| ATP-dependent deoxyribonuclease subunit B [Oceanobacillus iheyensis
            HTE831]
 gi|81746700|sp|Q8ERW6|ADDB_OCEIH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|22776863|dbj|BAC13137.1| ATP-dependent deoxyribonuclease subunit B [Oceanobacillus iheyensis
            HTE831]
          Length = 1166

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 119/990 (12%), Positives = 259/990 (26%), Gaps = 143/990 (14%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHAL-----KNEKYGMWWL---LAADFLKIASKYWTER 198
                 L  ++  ++  E   +DL                          L    + +   
Sbjct: 118  GFLGQLETMLTELKRYEITPDDLRMQQSHLTDFVHQSPSEQGLTRKLSDLIYIYETF--I 175

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                        Q+ L+  + +         I I G     P    +++ +    N   V
Sbjct: 176  YALQGTYVDSEDQLQLLIQQIKQSSILNNADIYIDGFHSFTPQEQSVLTELMKTSNSITV 235

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               LD       W                  +   + L +L     +  ED   L  +  
Sbjct: 236  ALTLD-----DPWKE-----DASELDLFYQPSQTYHVLKQLAWEAGVPVEDPIILDTLEG 285

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                R                      +++     +    + + EA + R E   IA  +
Sbjct: 286  NFQNR------------PYFAHMEKYFDSRPAPAYEGEVPIEIFEAVHPRAEVEGIAQQV 333

Query: 379  RMSLDEN---KKKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
               + +N    +  AL+          ++     + + + I    P+       ++ S+L
Sbjct: 334  LELIRDNRYRYRDIALLIRQPEVYHDLIETIFNDYELPVFIDEKRPMLHHPLIELIRSIL 393

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGN-KNSYDIMDLKSLV 492
              +       AI  ++K  L      E  L   + + LE   +    ++ +  +      
Sbjct: 394  EVVQGNWRNDAIFRVLKTGLIPSADDEFPLTMDSIDQLENYVIEFGIRSRHQWIGENKWK 453

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT-YKTNKNSTCGNLSIS 551
              R     ++      +     E +E      D ++  I  +    +         +++ 
Sbjct: 454  YQRFRGFDSSAQTDRER-----ELQESMNRYRDQVISAIATVDEQLRAATTVKDLCIAMY 508

Query: 552  DWTKLT-----VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
             W +       +   +    D+         E+    +  LF +++E     K +   + 
Sbjct: 509  QWLEELKIPDQLEVTRKYYDDQGLPEKGREQEQVWDAVIQLFDEMVEIAGEEKMDLSVFQ 568

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
              +   I+             + +     SR+ N     L G+NEG+WP     +  +  
Sbjct: 569  VALDAGIETLQFSHVPPSMDHIIVGTIDRSRMSNIRCAFLLGVNEGIWPMKPTSDGMIDE 628

Query: 667  VMQ---SDLNLKTAEKYIGQA-----AHDFEMANGTRHLIYTRSLRENNIPT-IASRWLQ 717
              +       LK A+    Q                  L  +  L +      + S+ + 
Sbjct: 629  AERLLLEQNGLKLADTSERQLLDDWFYMYLAFTVAKDRLKISYLLSDEEGKAKMPSQLIH 688

Query: 718  RLLVLGGTDFFDNLKKRGQC--------------YLDWTRKLD--------YTTKQPHYK 755
            R+  L        L +  +                   T +L                Y+
Sbjct: 689  RVEELFPATKNHILLQDPEDESNTRRFVSTELKSRSALTAQLAKFKKGYPIDPIWWEVYQ 748

Query: 756  RPKPFPPLEAQPRT----------------------------YSFSEIKQLINDPYAVYA 787
                  P                                    S S ++      Y  +A
Sbjct: 749  WYVEHHPQGGTTHRVLQGLHYENKPESLQKDTVEQLYPKRIQASVSRLETYYRCSYQHFA 808

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI----------NHLMKQ 837
            +  L L+         D  D G LFH  + ++ +    +                +    
Sbjct: 809  KYSLNLEERRT--YKLDAPDIGQLFHEALKKITEWIHAEGNDFSALTKSQSSHYANRAVT 866

Query: 838  IIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPA------- 887
             +    + + L         +    ++     F+  E+   S    + + +         
Sbjct: 867  ELSPVLQHQILHSSNRYAYIQKKLEEVIARATFVLGEQARLSHFSPVGLELGFGDGNNQI 926

Query: 888  ---KMAIESI-GIHLTGFADRID--LLKSG-FVDITDYKTGDNP-KKETAQKLIDPQLSL 939
                M +E+   + L G  DR+D   L++  ++ I DYK+             I  Q+  
Sbjct: 927  PSLSMLLENGYELVLRGRIDRVDKAELENNLYLRIIDYKSSSKGLDLTEVYYGIALQMLA 986

Query: 940  EA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL---- 994
                 L             A + Y  +         +  +     +   +  ++ L    
Sbjct: 987  YLDVVLTHSEKWLGQQADPAGVLYFHVHNPMISAKGSMTEADIEEELFKQYKMQGLLLSN 1046

Query: 995  IEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
             EIV ++ +  +   S +  +        Y
Sbjct: 1047 EEIVKMMDSSLETGSSQIVPAALKKNGGFY 1076


>gi|282866609|ref|ZP_06275651.1| UvrD/REP helicase [Streptomyces sp. ACTE]
 gi|282558511|gb|EFB64071.1| UvrD/REP helicase [Streptomyces sp. ACTE]
          Length = 1137

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 126/1088 (11%), Positives = 260/1088 (23%), Gaps = 158/1088 (14%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE            A + +   +++A  ELR       G      P   +        
Sbjct: 66   TLVEAVAARVAAGTDPARMLVLTFSRKAAVELRDRMATRLGG--ARGPQATTFHSYCYAL 123

Query: 89   FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A        +    +S  ++ + +  L+     ++      L          +     
Sbjct: 124  VRAHQDADLFADPLRLLSGPEQDVAVRELLAG---QVGLERSGLAHVRWPDELRACLTTR 180

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++          + L A         W  AA FL         + V   A  
Sbjct: 181  GFADEVRAVLARSRELGLGPDALAAFARRTGRPDWSAAAQFLAEYLDVLDAQGVLDYAEL 240

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP-------NGAIVL 259
                 +   R E    +  +   + +     + P+  RL+  +  +         G  ++
Sbjct: 241  VHRAVLLAERPEVASRLAESYDAVFVDEYQDTDPSQVRLLHALTGNRTAAPGTGGGRTLI 300

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
               D       +                                      V  L      
Sbjct: 301  AFGDPDQSIYAFRGADVNGILDFPDTFRRFDG--------------APAPVGVLTTSRRS 346

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                             + + +  +  ++  +  +    V          E  +IA  LR
Sbjct: 347  GAQLLAATRLLTRRMPLTRLPSDKVRAHRELSAAREGGRVETYTYPTASTELENIADLLR 406

Query: 380  MSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLL 434
             +  E     +  + L+ A       V+  LT  G+ +++      L      + L + L
Sbjct: 407  RAHLEDGVPWRDMAVLVRAGGRSLPSVRRALTSAGVPLEVDGDDLALRHEPAVAPLLTAL 466

Query: 435  NAIF-------------------------------------------KLNDFMAIATLVK 451
              +                                            +  D     TL+ 
Sbjct: 467  RTVATAALRRPGDEAPGANALEAEAPGDGDGTTAPGEAPAPDTAEGTRPLDTETALTLLA 526

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             PL         L R   AL                                  P     
Sbjct: 527  SPLG--SMDAADLRRLGRALRDEERAAGNRLPPPSG---------ELLARALAEPERLVT 575

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                    A  L   + +    L    T + +       + W                  
Sbjct: 576  HDPAYARGAQRLGALLRKARELLEGGGTAEEALWTLWDGTPWPGRLERAALRGGAAGRNA 635

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              +L         ++      E  +  +       ++  + I  +T+  +  +   + ++
Sbjct: 636  DRDLDAVCALFDAAA----RAEERTGGRGALNFLEEVDAQDIAADTLSRRSVRPDAVRLM 691

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA----HD 687
                S+ L +  +++ G+ EG+WP    +   L         L          A      
Sbjct: 692  TAHRSKGLEWRVVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEERRLF 751

Query: 688  FEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
            +  A   R  L+ T      +     SR+L  L V           +R         +L 
Sbjct: 752  YVAATRARERLVVTAVKAPADDGDQPSRFLTELGV--EPRDVTGRPRRPLAVAALVAELR 809

Query: 747  YTTKQPHY-----------------------------------------KRPKPFPPLEA 765
             TT  P                                            R +       
Sbjct: 810  ATTVDPAASEALRDAAAHRLARLAALTDDEGHPLVPAAHPYRWWGLNEPTRSEVPLRDRD 869

Query: 766  QPRTYSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
             P   S S + QL N      +  R      +            G + H ++ + +    
Sbjct: 870  HPVVLSGSALDQLANTCALQWFLGR-----EVKADAPATAAQGFGNVVH-VLADEVASGR 923

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                 ++       + +    +          +         FL      ++    +   
Sbjct: 924  TPADLDVLMERLDSVWNGLVFDAPWKSQQEKDQAR--DALERFLRWHVMDRAGRTPVAGE 981

Query: 885  IPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEA 941
                + +E+    + + G  DR++    G   + D+KTG   P K+       PQL++  
Sbjct: 982  HAFDVTLEAGEYAVRIRGSMDRVEQDTEGRAYVVDFKTGKAAPTKDEVAAH--PQLAVYQ 1039

Query: 942  AALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL--KNLIE 996
             A++ G+  ++      +      ++L+Q        +   K  + E          L  
Sbjct: 1040 LAIREGAVDEVFDGRRPESGGAELVQLRQGAPKKEGGDALPKVQSQEPLSGEWVPDLLAT 1099

Query: 997  IVTLLQNG 1004
                + + 
Sbjct: 1100 AAGRVLDE 1107


>gi|331005036|ref|ZP_08328441.1| RecB family exonuclease [gamma proteobacterium IMCC1989]
 gi|330421164|gb|EGG95425.1| RecB family exonuclease [gamma proteobacterium IMCC1989]
          Length = 921

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 102/732 (13%), Positives = 210/732 (28%), Gaps = 83/732 (11%)

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRV----- 402
            + +       +  +E DN   E  + A   R ++++    +  +I  +    R+      
Sbjct: 204  LASPNYTPKTLQRVEFDNSDAEMQAAAQWARTTVEQQADVRIGIIVPNLGQCRQQVERAF 263

Query: 403  -----KLEL----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL-----NDFMAIAT 448
                          R+ +  + SAG PL  T   +    LL    +       D   +  
Sbjct: 264  ISEFEAHSFNPTTERYTLPFNFSAGTPLGDTPLIAATLQLLKLQEQRGRSQEWDTEYLVH 323

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
             +  P       E     A   L          +     L+       +   +       
Sbjct: 324  CLLSPFWGNYTSELERRTA---LVSKLQSLGTFTISGDTLRYWAEKIESKLNSANENE-- 378

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                          L D++ Q         +      G    S W ++ +  L  +    
Sbjct: 379  ------------RRLFDYLNQFHQ-----FSTSTINKGKHLPSRWIEIFLQQLDILQWPG 421

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
             R   +  +++  +    L        S + A          + +            S +
Sbjct: 422  ERTPDSQEYQQ-TQLWYQLLESFAGLDSVLNAVDNNTAIQQLQSMANHMPFQAKVPDSPI 480

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH-- 686
             ILG LE   L+F    + GL++ VWP   + N  L   +Q + N+  A      A    
Sbjct: 481  QILGILEGAGLHFSHCWVMGLHQQVWPPAPSPNSLLPIRLQREHNMPHASSLRELAYAQS 540

Query: 687  --DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
              D    +    +I++    E++      R L   L+          +       +W   
Sbjct: 541  LTDNYR-HCADTIIFSTPAHEDDGEQ---RLLASQLISDIPLTELTTQATDDGLENWYHS 596

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
            L  +            P              K    +P+  + +  L             
Sbjct: 597  LQNSRDLELIDCADA-PAFTGNQLVGGAGLFKSQAENPFDSFVKYRLGAPLPIDAVNGFS 655

Query: 805  RTDRGTLFHNIITELIKKRINK--NTPEINHLMKQIIDSHF----------EKENLPPHI 852
              ++G + HN +  + ++  N+       +  + ++I              + ++L   +
Sbjct: 656  HIEKGHILHNGLAAIWQQLKNQESLLALSDTALAELITEQVNIAISDIKRHKPKHLSDPL 715

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
              I      ++   +L  E+K       + +     +    + I++    DR+D L+ G 
Sbjct: 716  CKIESERQSQLITQWLALEKKR-PPFTVVAIEEARTITFNGMNINI--RIDRVDQLQDGR 772

Query: 913  VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFS----QIDCRKVANLFYIRLKQ 967
              I DYKTG +       ++  +PQL L A                   VA+  +  L  
Sbjct: 773  YLIIDYKTGKSNINAWKGERPKEPQLPLYALTYSENVNEVKGISFAQINVADQHFKGLGD 832

Query: 968  KFKIDCITNDKK-----KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEK--SNI 1020
                  I   +K       + +       + L  ++     G+      +   ++     
Sbjct: 833  GDIASGINPIEKNKMGLPNTWESTIAHWQQKLDSLLNEFTQGDC----RIEYLDEIAKTY 888

Query: 1021 QSEYDHLARVAE 1032
              +Y  + R  E
Sbjct: 889  AGDYLRINRFHE 900


>gi|323141944|ref|ZP_08076801.1| conserved domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413579|gb|EFY04441.1| conserved domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 1069

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 111/942 (11%), Positives = 258/942 (27%), Gaps = 163/942 (17%)

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                + + L   N     G     M    +   K     I I             +  +A
Sbjct: 174  FYLLYRQYLENNNWYDLEGKYRLAMEMLQKQDCKIPWKHIYICDFFSLDQVQINFLQALA 233

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
             H +  ++       +        +++     S              K +         +
Sbjct: 234  KHVDDLVI------SMSYEGRRVSSDEKAKYESIT------------KFMRASTNTVNAL 275

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
            K LG     +        +    P    MR    L +    +      V      ++ +E
Sbjct: 276  KILGATVASLAA-----EELGQAPAGVAMRQLRHLGHAPAPVPA--EGVESYCFASDEQE 328

Query: 371  AISIAIALRM--SLDENKKKSALI-TADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
               +   ++   + ++      ++   D +L   ++     +G+ + +     L     +
Sbjct: 329  MRWVLKRIKQQLAHEKCAANRIVVAVRDFSLYSGLRQLADEYGVPVSLPQTTALVAQPLA 388

Query: 428  SILTSLLNAIFKLNDFMA-IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
             +L  LL A  +  +  A    L+   L +  F     + +    +       +      
Sbjct: 389  VMLRLLLTAAGRGREAAAAYLELLSCELLRLFFDVDVETASSLRTQTYFKTRQEAMQKAH 448

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            +L                        + E  +     ++   +    +  Y         
Sbjct: 449  ELL---------------------GDATELWQQLDAFIET-TKAEAAISEYAEQLTQLVQ 486

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG--SCIKANAIE 604
            +L + +        L    +     L  L  ++          +  E    S  K    +
Sbjct: 487  SLPLEERL----GSLHKQGVPLDFMLACLRSKDAVLKAVQQLVRDYEVAKNSDYKLTLSQ 542

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            W  ++   +    +  +  +   +        + L+FD++ + GL EG +P+   +N   
Sbjct: 543  WNSLLQEALGQVQLTLRFGRRDGVLFTEVGNVQGLSFDSVYIMGLREGEFPQAKNENWIY 602

Query: 665  SRVMQSDL-----NLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRWLQ 717
            +   +  L     +L T      + A+ F  A     + LI T    E+   ++AS +L+
Sbjct: 603  NDTERKQLADAGYDLPTVGSSFDEDAYFFAQAVCAAQKELILTW--HEDVGESLASSYLE 660

Query: 718  RLLVL---------------------------GGTDFFDNLKKRGQCYLDWTR------- 743
             +  L                              + + + +                  
Sbjct: 661  EIWKLFLQPGSEDKRLDKDYVKAQTLPDFGVASAEEAYSDKRFAAADLPKIAELSGQKAP 720

Query: 744  -KLDYTTKQPHYKRPKPFPPLEAQPR--------------TYSFSEIKQLINDPYAVYAR 788
                    +    R    P      +               +S S ++     P+   A 
Sbjct: 721  SAEQQLAAKADILRKAQQPEYNGDLQNSLPTKLLRKQIGSRFSASRLEAYAACPFRFLAE 780

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---------KNTPEINHLMKQII 839
            ++                D G + H  +   ++  +            T E+  + + + 
Sbjct: 781  KVWLAQAAEEADDLLQPRDAGDILHQTLKSFVEPYLGSKIIGETMADLTEELEAVFEDVC 840

Query: 840  DSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHE---EKIQSSIEKIFVNIPAK--- 888
             +          ++   I  + +    ++   +L  E   ++         V        
Sbjct: 841  TAALNDGGSTVASVNEDIWQVEKQRLWRMLVRWLRFEYADQQRWGGFRPQAVEWNFSSKN 900

Query: 889  -----MAI-ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
                 + + +   + L G  DRID        ITDYK+G  P     ++ +D QL +   
Sbjct: 901  GKPLYLTLSDGSDVSLIGRVDRIDSDGE-HAFITDYKSGTPPTGSAMEQGLDLQLPVYLL 959

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFK--------------IDCITNDKKKYSADELSE 988
            A+ A S  Q+    V+   Y  LK+  +                    +  + + D   +
Sbjct: 960  AVAALSKEQLA---VSGGCYYSLKEGKRKSAFLLESVGNSDLPYKKPKNAAELTWDSFKQ 1016

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
            +  + L + +  +  G+      L    + ++      + RV
Sbjct: 1017 EKEQLLKDYIERIYAGDFA----LAGCRRCDVYCPLHDICRV 1054


>gi|291454012|ref|ZP_06593402.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
 gi|291356961|gb|EFE83863.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 1125

 Score =  219 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 122/1040 (11%), Positives = 255/1040 (24%), Gaps = 140/1040 (13%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE+             + +   ++RA  +LR    +     +   P   +        
Sbjct: 68   TLVESVAARLAAGTPPERILVLTFSRRAAVDLRDRMAQRLSTATA--PRATTFHSFCYAL 125

Query: 89   FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A             +S  ++ + +  L+             ++         +     
Sbjct: 126  VRAHQDADLFAEPLRLLSGPEQDVAVRELLAGQIELGRQGRARVH---WPDELRACLTTR 182

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++          + L           W  AA FL         +     A  
Sbjct: 183  GFADEVRAVLARSRELGLGADALAEFARRGGRPDWSAAASFLAEYLDLLDAQGTLDYAEL 242

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP--------NGAIV 258
                 +   R E    +  T   + +     + PA  RL+  +A +          G  +
Sbjct: 243  VHRAVLLAERPETARQLAETYDAVYVDEYQDTDPAQVRLVRALAGNHGPAVPGAGGGRTL 302

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
            +   D       +                 +                    V  L     
Sbjct: 303  VAFGDPDQSIYAFRGADVNGILEFPETFRRADG--------------APAPVAVLTTGRR 348

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                              + +    +  ++  +  +    V          E  +IA  L
Sbjct: 349  SGAHLVEATRLVTRRMPLTRLSADTVRAHRSLSPARDGGRVEAYTYPTTGAELDNIADIL 408

Query: 379  RMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSL 433
            R +  E      + + L+ +  +    V+  LT  G+ +DI     PL      + L + 
Sbjct: 409  RRAHLEEGVPWGEMAVLVRSGGHTIPAVRRALTSAGVPLDIDGNDLPLRHEPAVAPLLTA 468

Query: 434  -----------------------------LNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
                                          +      D     TL+  PLA     ++  
Sbjct: 469  LRAAATAALQDRAEEEAGPVPEPEPDAGTQDTAPAWLDTETALTLLASPLAALDAADQRR 528

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                   E  A            L   +                +    E     A LL 
Sbjct: 529  LGRALRDEERAAGNPLPPPSDTLLARALA------------EPERLVTHEGYAHGARLLG 576

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
            + + +  T L    + + +       + W +      +           +L         
Sbjct: 577  ELLRRARTLLAKGGSAEEALWELWDGTTWPQRLERSARRGGAAGRNADRDLDAVCALFAT 636

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
            ++      E  +  +       +I  + I  +T+  +  +   + ++    S+ L +  +
Sbjct: 637  AA----RAEERTGGRGALNFLAEIEAQDIAADTLTRRAARPDAVRLMTAHRSKGLEWRLV 692

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNL---KTAEKYIGQAAHDFEMA--NGTRHLIY 699
            ++ G+ EGVWP    +   L         L         + +    F +A       L+ 
Sbjct: 693  VVAGVQEGVWPDLRRRGSLLEADRIGRDGLAEPLPPGALLAEERRLFYVAATRAAERLVV 752

Query: 700  TRSLRENNIPTIASRWLQRLLVL-------------------------GGTDFFDNLKKR 734
            T            SR+L  L V                                  L++ 
Sbjct: 753  TAVKAPAEDGDQPSRFLSELGVEPKDVSSRPRRPLSVAALVAELRATTVDPRVSATLREA 812

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--------------YSFSEIKQLIN 780
                L     L     +P      P      +  T               S S + QL N
Sbjct: 813  AAHRLAKLAALTDEDGRPLVPTAHPDRWWGMREPTRSQVPLRDRDAPVVLSGSALDQLAN 872

Query: 781  -DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                  +  R      +            G + H ++ + +         ++       +
Sbjct: 873  TCALQWFLGR-----EVKADAPASAAQGFGNVVH-VLADEVASGRTPADLDVLMERLDSV 926

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IH 897
                  +     +         +    FLE     ++    +       + + +    + 
Sbjct: 927  WDALAFDAPWKSVQEKENAR--QALERFLEWHTLDRAGRTPVASEHDFDITLGAGPYEVR 984

Query: 898  LTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR- 955
            + G  DR++    G   + D+KTG   P          PQL++   A+  G+   +    
Sbjct: 985  IRGSMDRVEQDPRGRAYVVDFKTGKQAPTAAEVAHH--PQLAVYQLAVTEGAVDPLFDGV 1042

Query: 956  --KVANLFYIRLKQKFKIDC 973
              +      + L+Q      
Sbjct: 1043 RPEPGGAELVHLRQPAPKKE 1062


>gi|239908037|ref|YP_002954778.1| hypothetical protein DMR_34010 [Desulfovibrio magneticus RS-1]
 gi|239797903|dbj|BAH76892.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 996

 Score =  219 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 148/1035 (14%), Positives = 301/1035 (29%), Gaps = 125/1035 (12%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
                V +  P +RA + L     E+ G    +  ++  +  + E         +      
Sbjct: 37   DFTDVVVLFPLRRAARHLCDRLAELPGLPKPL--LLPEIAAIGEWTAALGADCAPVPPVM 94

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +  + R+  L  ++        +           + P    +       LA+I++ +  +
Sbjct: 95   LDALDRVAILHDIVRDIAATASED---------EAFPADITDFFPWGLELAEIMEELFRQ 145

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                +DL  L+ +            L    + + +RL++    +P               
Sbjct: 146  GIPGQDLAHLEGQVLAP-AAALLGRLGAIHQRYRQRLLDEGLGTPGLLAALAAENAPAVA 204

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +     +   G      A   L+ T+                +   +W+     +    
Sbjct: 205  ERFAGKRLFACGFAVLTGAEKTLLQTLWKK------------GLLELVWHADPALADGGR 252

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
              +     H                   KRL                  L       R T
Sbjct: 253  PIHFACREH-------------------KRLLADWKAKAVVLGDGKARKLRAKADPSRGT 293

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402
             +L+    N+      +  IEA +   E   +  AL  + D   + +A++  D  L   V
Sbjct: 294  LVLDADAANLSS--KKLRFIEAHDLHAELKGLEEALSEAPDL--ESTAIVLPDTGLLSPV 349

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSIL-----TSLLNAIFKLNDFMAIATLVKHPLAKF 457
               L R   +++IS G PL+ +  + +L                 +  +  L++HP  K 
Sbjct: 350  LHILPR--RDVNISMGYPLARSSLARLLETILALQETRLERGRYHWRELIALLRHPYLKM 407

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                   +    A+        +       +  L L     + +    P        E  
Sbjct: 408  L--RLGAAEPLRAVFHGLEAAIRQ--GGAYVDPLALPLAGGEDDEPPSP--------EAL 455

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             LA  ++   L     + T +   N+  G   +    +      +   +D       L+ 
Sbjct: 456  ALAGRVLGVCLAAFDAVDTPRALGNALAGLCDLLLDPEHCGDAWERFLIDAE----CLFR 511

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
               G   +    ++ +        A     ++ RL+  E    + E  + L +LG LE+R
Sbjct: 512  LAAGIVPALTSGRLADAA----LPAPTLFALLRRLLADERAPFEAEPLTGLQVLGVLETR 567

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRH 696
            LL+F  L L    E   P     +P L   ++  + L  + +    AA++      G   
Sbjct: 568  LLSFKRLFLLDAVEAKLPGAPRYDPLLPDTLRRLMGLPDSRERDLVAAYNLYRLFFGAEE 627

Query: 697  LIYTRSLRENNIPTIA-----SRWLQRLLVLGGTDFFDNLKKRGQCY----LDWTRKLDY 747
            +                    SR++++LL          LK          L        
Sbjct: 628  ITVFYRTGSPGSGLFEDKPGRSRFVEQLLWEEEKRLGRVLKPGEPPVSILRLPPCPIPAS 687

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                P             + +  S S     +  P   + R +  L  +    ++ DR  
Sbjct: 688  DPAVPVTGEVADRLAAYLETQKLSASFFDAYLACPLRFFYRYLSPLSPLAEVAEEGDRAA 747

Query: 808  RGTLFHNIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
             G + H ++ +     +N++          +  + ++          +    + L  +  
Sbjct: 748  VGEVVHEVLRDFFTPYLNRDIDAADLDAAALADLFETRLAGHAAFAALPPDGQLLLTRTG 807

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYKTGD 922
             + L            + +      ++E+ G    LTG ADRID  + G V I DYKTG 
Sbjct: 808  RAKLAEAVAATPRTTILALETDLTASLETGGRTYPLTGRADRIDQREDG-VVILDYKTGR 866

Query: 923  NPKK---------------------------ETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
             PK                            + A +    QL L         +      
Sbjct: 867  PPKGQGRFWTDDHLWDRLAADPLAADDALFEDIASRAGSVQLPLYCWL-----YHAARGE 921

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS-HLRL 1014
              A+   + L+ K +   +   ++    +  ++   +N+ +++  +        S   R 
Sbjct: 922  TPADAAVVELRDKGQERPLFGPRQ--DPETRAQAITRNVPQLLGAVLRHLANIPSFRPRP 979

Query: 1015 SEKSNIQSEYDHLAR 1029
                    E+    R
Sbjct: 980  DNNRCPYCEFRQACR 994


>gi|260206547|ref|ZP_05774038.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289575917|ref|ZP_06456144.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289540348|gb|EFD44926.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
          Length = 1055

 Score =  219 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 128/1077 (11%), Positives = 266/1077 (24%), Gaps = 145/1077 (13%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-- 70
            P +     ++ A +             +P     V +   + R     RS       +  
Sbjct: 27   PGTGKSTLLVEAAVAHIG------AGTDPES---VLLLTGSGRMGMRARSALTTALLRSR 77

Query: 71   ------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
                   +   P+++++              + +  P      RLL  A    I R  L 
Sbjct: 78   TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALP------RLLTSAEQDAIIRELLA 131

Query: 125  DIIKDLYP--ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
               +D      +  +           A  L +++           +L  L   +    W+
Sbjct: 132  GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWI 191

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
             A  F +   +              V      +   A            + G+     A 
Sbjct: 192  AAGQFAQRYEQ--------------VMLLRGAVGLAAPQATAPALSAAELVGAALEAFAV 237

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA--KLL 300
               +          +++       P A        +    +          +     +  
Sbjct: 238  DPELLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPT 297

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFSDV 359
              L             S  +                   R     +  +I         V
Sbjct: 298  GLLADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSV 357

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS 416
             +  A +   EA  IA ALR +   +       A+I      A R+   L   G+ +   
Sbjct: 358  TVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPP 417

Query: 417  A-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            A G PLS       L ++L A     D      L+  P+           R         
Sbjct: 418  AVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRT------L 471

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
             R             LV         +        R+       A       L    P  
Sbjct: 472  QRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDP-- 529

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                 +++       S   +  +   ++      +   +L        ++  +       
Sbjct: 530  -----RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYV-----S 579

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                A+    ++ +T L            +  + +L    +    +D +++ GL +G+WP
Sbjct: 580  RTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWP 639

Query: 656  KNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
                +   L            ++       L   E+ +   A            + + + 
Sbjct: 640  NTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAG 699

Query: 704  RENNIPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
               +   + S +   +        +            L     +                
Sbjct: 700  GGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDD 759

Query: 762  PLEAQP--------------------------------------RTYSFSEIKQLINDPY 783
                                                         T + S ++ L + P 
Sbjct: 760  ADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPL 819

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
               A R    +           +  G++ H +  E       ++  ++   + + +  H 
Sbjct: 820  RWLAERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHL 867

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHL 898
                     +         +  +F++   + +S + ++ V +    A+E        I L
Sbjct: 868  PFGAQWYSAN--ELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRL 925

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
             G ADR++   +G + I D KTG  P  +   +    QL++   A+  G     D    A
Sbjct: 926  RGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGA 984

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013
             L Y+       +     D        L+  +      +V  L        FI+   
Sbjct: 985  RLVYVGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQFIARRN 1034


>gi|215413075|ref|ZP_03421776.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A]
 gi|294993861|ref|ZP_06799552.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 210]
 gi|298526679|ref|ZP_07014088.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            94_M4241A]
 gi|298496473|gb|EFI31767.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            94_M4241A]
 gi|326902571|gb|EGE49504.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis W-148]
          Length = 1055

 Score =  219 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 129/1077 (11%), Positives = 266/1077 (24%), Gaps = 145/1077 (13%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-- 70
            P +     ++ A +             +P     V +   + R     RS       +  
Sbjct: 27   PGTGKSTLLVEAAVAHIG------AGTDPES---VLLLTGSGRMGMRARSALTTALLRSR 77

Query: 71   ------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
                   +   P+++++              + +  P      RLL  A    I R  L 
Sbjct: 78   TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALP------RLLTSAEQDAIIRELLA 131

Query: 125  DIIKDLYP--ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
               +D      +  +           A  L +++           +L  L   +    W+
Sbjct: 132  GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWI 191

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
             A  F +   +              V      +   A            + G+     A 
Sbjct: 192  AAGQFAQRYEQ--------------VMLLRGAVGLAAPQATAPALSAAELVGAALEAFAV 237

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA--KLL 300
               +          +++       P A        +    +          +     +  
Sbjct: 238  DPELLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPT 297

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFSDV 359
              L             S  +                   R     +  +I         V
Sbjct: 298  GLLADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSV 357

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS 416
             +  A +   EA  IA ALR +   +       A+I      A R+   L   G+ +   
Sbjct: 358  TVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPP 417

Query: 417  A-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            A G PLS       L ++L A     D      L+  P+           R         
Sbjct: 418  AVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRT------L 471

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
             R             LV         +        R+       A       L    P  
Sbjct: 472  QRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDP-- 529

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                 +++       S   +  +   ++      +   +L        ++  +       
Sbjct: 530  -----RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYV-----S 579

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                A+    ++ +T L            +  + +L    +    +D +++ GL +G+WP
Sbjct: 580  RTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWP 639

Query: 656  KNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
                +   L            ++       L   E+ +   A            + + + 
Sbjct: 640  NTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAG 699

Query: 704  RENNIPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
               +   + S +   +        +            L     +                
Sbjct: 700  GGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDD 759

Query: 762  PLEAQP--------------------------------------RTYSFSEIKQLINDPY 783
                                                         T + S ++ L + P 
Sbjct: 760  ADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPL 819

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
               A R    +           +  G++ H +  E       ++  ++   + + +  H 
Sbjct: 820  RWLAERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHL 867

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHL 898
                     +         +  +F++   + +S + K+ V +    A+E        I L
Sbjct: 868  PFGAQWYSAN--ELARHRAMIQAFVQWRAQSRSELTKVGVEVDIDGALEDGSGQARKIRL 925

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
             G ADR++   +G + I D KTG  P  +   +    QL++   A+  G     D    A
Sbjct: 926  RGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGA 984

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013
             L Y+       +     D        L+  +      +V  L        FI+   
Sbjct: 985  RLVYVGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQFIARRN 1034


>gi|300691832|ref|YP_003752827.1| helicase, C_term RecB family exonuclease [Ralstonia solanacearum
           PSI07]
 gi|299078892|emb|CBJ51553.1| putative helicase, C_term RecB family exonuclease [Ralstonia
           solanacearum PSI07]
          Length = 961

 Score =  219 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 152/962 (15%), Positives = 283/962 (29%), Gaps = 108/962 (11%)

Query: 10  TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEI 67
             AP   F      A           +D        +  + VPT   I  +R        
Sbjct: 5   AFAPGPAFLSHAADA-------AWRFFDAHATDAPGAGVVVVPTAAQIPGVRGALHASAK 57

Query: 68  TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI--LIWRNKLPD 125
                 +LP I +LG      +  DL     L    S + RLL + + +    W  +   
Sbjct: 58  AAGALRLLPRILTLG-----HWLLDLPPEPGLPAARSTLSRLLAVQQALKTQAWLREALG 112

Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
              +        + ++ ++ +       D  D  ETE +      AL       +  L+ 
Sbjct: 113 AQDEAALWGVAQVLVTVSDELSQRWLTLDAADS-ETEGRHDALEAALSAALERTYAQLSE 171

Query: 186 DFL----KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
            FL    +I   +W        AS P+  ++  MR   + L     GP++    T    A
Sbjct: 172 RFLGTESRIVLTFWQLL---SGASDPIPVRLRAMRRLLDAL----CGPVVWMSPTDPEGA 224

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
               ++  A       +            W         +             +   LL 
Sbjct: 225 DLDFLTRAAGRVPVLRI---------GYDWQAREHAPAAVAPVTH-------AAFRDLL- 267

Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                   +             +   ++  LP                         + +
Sbjct: 268 --------LHAWSECGTVAQQATQACAEVELP----------------------PPGLRI 297

Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
             A    +EA   A  L   L+  ++  AL+  DR +ARRV+  L R  + +    G  L
Sbjct: 298 ASAARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKL 357

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
           STT  ++ L   ++ +    D  A+  L+K P                  EL       N
Sbjct: 358 STTRAAAALMRWIDVVQGDGDTAALLDLLKSPFCLRDADAPSSVAPAWVAELERRVRRHN 417

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                        R+        +    +     D      L + +      L+  +   
Sbjct: 418 VSGGWG-------RLRRLVAERGMNADAADADAGDGPPTGRLAERL-----GLLADEAAL 465

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
               G+ ++  W  L    L  + +    +  +   +          S      +  + +
Sbjct: 466 WRRAGHATLDAWVTLLAGTLDRLRMRTGLQNDDAGRQLLDWLDRLRVSVHGSADAGARFS 525

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
             EW  +++ L++          +   + IL    +R+  FD +++ G ++   P    +
Sbjct: 526 LQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPE 585

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQR 718
             F S  ++ +L L    +   Q A D   +      ++ T         P   S WL+R
Sbjct: 586 WLFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPNRLSGWLER 645

Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
           L                   L   R+                      P T S +    L
Sbjct: 646 LQRRLAVAGTRVDVPVVLPALQTARQ---------PTDMPAPAAPALVPSTLSAAAYNSL 696

Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLM 835
              PY  +  R+L+L  +     + ++ D G L H I+    ++ ++    +  +   L+
Sbjct: 697 RRCPYQFFVGRMLRLGELEEVSDELEKRDIGELLHAILHRFHRQLLDTPMADPADRLALL 756

Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAIESI 894
           + + D  F          + +   +  +  S+L  +   ++         + A+ +I   
Sbjct: 757 QTLTDERFGPLLAEDGHALRFYRRWQGVMTSYLAWQAAREAEGWRFEAGEVDAETSIALP 816

Query: 895 G---IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK--LIDPQLSLEAAALKAGSF 949
           G   + L G  DR+D      V + DYKT          K    D QL            
Sbjct: 817 GAQALRLRGRIDRVDTHPEHGVAVLDYKTQSPIALARKAKMPFEDCQLPFYGLLDARAGA 876

Query: 950 SQ 951
             
Sbjct: 877 GG 878


>gi|256374999|ref|YP_003098659.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
 gi|255919302|gb|ACU34813.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
          Length = 1050

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 129/1061 (12%), Positives = 276/1061 (26%), Gaps = 149/1061 (14%)

Query: 30   LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS-------TILPIIKSLG 82
            + E             SV +    +RA + LR+    +  +            P+++++ 
Sbjct: 51   IAETAARRVHAGAAPESVLVLTANRRAAESLRAHLTALIRRTPDGELLPVVREPLVRTVH 110

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                    A  +      P      RLL       + R  +   ++    + P       
Sbjct: 111  SYAFAVLRARAVRDGEPPP------RLLAGPEQDAVVRELITGDVEAGARDWPER-LRPA 163

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                  A  L D++          EDL AL        W+ A  F +   +     L   
Sbjct: 164  LALPGFAGELRDLLLRAVERGLAPEDLVALGEGHGRDEWVAAGLFGEQYEQV--SLLASQ 221

Query: 203  NASSPVGYQIALMRAEAEHL--------MKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
              +        +  A              +     + +  +    P    L+  V +  +
Sbjct: 222  GLAPAYDAAELVDNALLAFENDEELLSGERARVRHVYVDDAQHLDPLQHALIRAVGSAAD 281

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
                L   D       +     +              PQ  L++                
Sbjct: 282  --EFLLFGDPDQAVFSFRGADPRLL-------VDGDSPQVVLSR---------------- 316

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                    R     ++      S +          P  +   + V L    +E +EA  +
Sbjct: 317  ------SHRLPSAVRAATAGLASRLPGASPAREVSPVGEGGTTQVRL--FASEAQEASWV 368

Query: 375  AIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSI 429
            A  LR +   +     + + ++ +       ++  L   G+ + +    +PL+     + 
Sbjct: 369  ADRLRRAHLVDGVPWSRMAVVVRSATRSLPVIQRALLAAGVPVAVPGTDLPLARQPAVTP 428

Query: 430  LTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            L +LL         D    A L+  PL         L R +  L  + +   ++      
Sbjct: 429  LLALLRCAAVPGSLDEDTAAMLLSSPLGG--ADPLALRRLRRGLRRLEIAAGRDRPSGEL 486

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
            L  ++ DR                  + +   A  +   +      +    + +      
Sbjct: 487  LVEVIEDRDRLAALE-----------DAESAPARRVARLLRTARDSIRRGSSVEVVLWDL 535

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE-GKTLSSLFSKIIETGSCIKANAIEWI 606
               +      V           +   +L       +T +    ++        A+ +E  
Sbjct: 536  WQDTGLQDRWVAMSSRHGTTGMQADRDLDAVVALFETAAKYVDRLPGASPDGFADYLEAQ 595

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             I+   +              + +L    S    ++ + + G+ EG WP    +   L  
Sbjct: 596  HIVGDTLAA-----AAPVGEAVAVLTAHASAGQEWEVVAVPGVQEGTWPDLRLRGSLLGV 650

Query: 667  VMQSDL-------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
                DL           A     +        +  R ++   ++R        SR+L  L
Sbjct: 651  ERLVDLVSGVGAGASAVAPLLAEERRLLLVATSRARRVLLVSAVR--GEDAQPSRFLDEL 708

Query: 720  LVLGGTDFFDN--LKKRGQCYLDWTRKLDYTTKQPHYKRPK------------------- 758
               G  +        +RG    +   +L      P     +                   
Sbjct: 709  EDAGEGETERRITPPERGLVLAELVGELRRVVCDPGESEDRRDRAATQLARLAADGVPGA 768

Query: 759  --------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                               E    + S S ++ L   P      R    D          
Sbjct: 769  HPDTWYGLAPVTTDVPLWTEEHTVSVSPSTVETLSKCPVRWVVERHGGQDPAE------L 822

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
             +  GTL H +              E          +  +            R    ++ 
Sbjct: 823  ASITGTLVHALAQAAASGAGEAELKEKLDE----AWTAVDAGAPW--FSRRERMRVERML 876

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIE----SIGIHLTGFADRIDLLKSGFVDITDYKT 920
             +FL      +  + ++ V     + +        + + G  DR++  + G   + D KT
Sbjct: 877  DAFLAWLSASRGQLTQVSVEEEISVDLPKVEGGPRLKVRGRVDRLETDRDGRPVVVDIKT 936

Query: 921  GDNP-KKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDK 978
               P  ++ AQ+   PQL++   A   G F+ +           + + ++ K       +
Sbjct: 937  AKTPVSRKDAQEH--PQLAVYQLASALGGFTHLGLATDPGGAALLYVAKENKKTGAAQLE 994

Query: 979  KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
            +    ++     L+ + E           + +         
Sbjct: 995  QTPLDEQGVRVWLERVQEAAGSSVGP--GYRAEENPDCDRC 1033


>gi|15610338|ref|NP_217718.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Rv]
 gi|15842788|ref|NP_337825.1| UvrD/Rep family helicase [Mycobacterium tuberculosis CDC1551]
 gi|148663061|ref|YP_001284584.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra]
 gi|148824398|ref|YP_001289152.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis F11]
 gi|167968317|ref|ZP_02550594.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            H37Ra]
 gi|253800238|ref|YP_003033239.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435]
 gi|254233813|ref|ZP_04927138.1| hypothetical protein TBCG_03137 [Mycobacterium tuberculosis C]
 gi|254365825|ref|ZP_04981870.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            str. Haarlem]
 gi|254552299|ref|ZP_05142746.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis '98-R604
            INH-RIF-EM']
 gi|297635849|ref|ZP_06953629.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207]
 gi|297732845|ref|ZP_06961963.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN R506]
 gi|306777524|ref|ZP_07415861.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001]
 gi|306786069|ref|ZP_07424391.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003]
 gi|306790436|ref|ZP_07428758.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004]
 gi|306794957|ref|ZP_07433259.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005]
 gi|306805002|ref|ZP_07441670.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu008]
 gi|306969292|ref|ZP_07481953.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009]
 gi|306973643|ref|ZP_07486304.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010]
 gi|307081352|ref|ZP_07490522.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011]
 gi|313660178|ref|ZP_07817058.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN V2475]
 gi|3242281|emb|CAA16669.1| POSSIBLE ATP-DEPENDENT DNA HELICASE [Mycobacterium tuberculosis
            H37Rv]
 gi|13883114|gb|AAK47639.1| helicase, UvrD/Rep family [Mycobacterium tuberculosis CDC1551]
 gi|124599342|gb|EAY58446.1| hypothetical protein TBCG_03137 [Mycobacterium tuberculosis C]
 gi|134151338|gb|EBA43383.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            str. Haarlem]
 gi|148507213|gb|ABQ75022.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra]
 gi|148722925|gb|ABR07550.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            F11]
 gi|253321741|gb|ACT26344.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435]
 gi|308214072|gb|EFO73471.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001]
 gi|308329222|gb|EFP18073.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003]
 gi|308333054|gb|EFP21905.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004]
 gi|308336740|gb|EFP25591.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005]
 gi|308348311|gb|EFP37162.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu008]
 gi|308353145|gb|EFP41996.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009]
 gi|308356887|gb|EFP45738.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010]
 gi|308360887|gb|EFP49738.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011]
 gi|323718066|gb|EGB27248.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551A]
 gi|328459973|gb|AEB05396.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207]
          Length = 1055

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 128/1077 (11%), Positives = 266/1077 (24%), Gaps = 145/1077 (13%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-- 70
            P +     ++ A +             +P     V +   + R     RS       +  
Sbjct: 27   PGTGKSTLLVEAAVAHIG------AGTDPES---VLLLTGSGRMGMRARSALTTALLRSR 77

Query: 71   ------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
                   +   P+++++              + +  P      RLL  A    I R  L 
Sbjct: 78   TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALP------RLLTSAEQDAIIRELLA 131

Query: 125  DIIKDLYP--ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
               +D      +  +           A  L +++           +L  L   +    W+
Sbjct: 132  GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWI 191

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
             A  F +   +              V      +   A            + G+     A 
Sbjct: 192  AAGQFAQRYEQ--------------VMLLRGAVGLAAPQATAPALSAAELVGAALEAFAV 237

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA--KLL 300
               +          +++       P A        +    +          +     +  
Sbjct: 238  DPELLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPT 297

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFSDV 359
              L             S  +                   R     +  +I         V
Sbjct: 298  GLLADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSV 357

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS 416
             +  A +   EA  IA ALR +   +       A+I      A R+   L   G+ +   
Sbjct: 358  TVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPP 417

Query: 417  A-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            A G PLS       L ++L A     D      L+  P+           R         
Sbjct: 418  AVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRT------L 471

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
             R             LV         +        R+       A       L    P  
Sbjct: 472  QRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDP-- 529

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                 +++       S   +  +   ++      +   +L        ++  +       
Sbjct: 530  -----RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYV-----S 579

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                A+    ++ +T L            +  + +L    +    +D +++ GL +G+WP
Sbjct: 580  RTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWP 639

Query: 656  KNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
                +   L            ++       L   E+ +   A            + + + 
Sbjct: 640  NTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAG 699

Query: 704  RENNIPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
               +   + S +   +        +            L     +                
Sbjct: 700  GGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDD 759

Query: 762  PLEAQP--------------------------------------RTYSFSEIKQLINDPY 783
                                                         T + S ++ L + P 
Sbjct: 760  ADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPL 819

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
               A R    +           +  G++ H +  E       ++  ++   + + +  H 
Sbjct: 820  RWLAERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHL 867

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHL 898
                     +         +  +F++   + +S + ++ V +    A+E        I L
Sbjct: 868  PFGAQWYSAN--ELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRL 925

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
             G ADR++   +G + I D KTG  P  +   +    QL++   A+  G     D    A
Sbjct: 926  RGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGA 984

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013
             L Y+       +     D        L+  +      +V  L        FI+   
Sbjct: 985  RLVYVGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQFIARRN 1034


>gi|303248299|ref|ZP_07334561.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
 gi|302490324|gb|EFL50236.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
          Length = 1002

 Score =  218 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 147/1069 (13%), Positives = 299/1069 (27%), Gaps = 145/1069 (13%)

Query: 11   IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG- 69
            I  +  FF  +   L+  T  +                +  P +RA + L      +   
Sbjct: 7    IPWTEEFFGAVAERLVAATGGD-----------FRDTLVIFPLRRAARHLCDRLAAMPEL 55

Query: 70   KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129
             K  +LP I ++GD   +   + +         +  + R+  L  ++     +       
Sbjct: 56   PKPVLLPEITAVGDWAADVGASFMP---TPPAVLDTLDRVALLYDIVREIAAE------H 106

Query: 130  LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
               + P + P   A        LA++++ +        DL  L   +           L 
Sbjct: 107  GGGDQPGAFPTDMARFFPWGLELAELMEELFRHNVPGRDLEYL-EGQVVPPAAALLARLG 165

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
                 + E+++E   ++P            E   +     I   G   +  A   L + +
Sbjct: 166  TIYARYREKMLEAGLATPGLLLALAGENAKEAAARLAGKRIFACGFAVASGAEKALFTAL 225

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                N   +L   D  +                           ++  +   +L      
Sbjct: 226  WRQGN-LEMLWHGDPALANPGARV-------------------HFACLEQKRWLGTLNAR 265

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
               +         R              D  +   L             +   E  +   
Sbjct: 266  AGCITGGKARRARRK-------------DDPDRPTLVLGAGTANLSSKKLRFFEGHDLHA 312

Query: 370  EAISIAIALRM-SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            +  ++   L      +    +A++  D  L   V   L R   +++IS G PL+ +  + 
Sbjct: 313  QLKALEGCLAEGQAADGLDGTAIVLPDTGLLSPVLHILPR--KDVNISMGYPLARSSLAR 370

Query: 429  IL-----TSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLSRAKNALELVALRGNKN 481
            +L                 +  +  L++HP  K      ++ L    +ALE    +G   
Sbjct: 371  LLETILTLQETRLDAGRYHWRELVALIRHPYLKMLHTGDDEPLRAVFHALEAALRQGG-- 428

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                    + V        +    P                  + +  C   L T  T  
Sbjct: 429  --------AFVDPLTLEFGDEEAPPPE----------------EALALCREVLGTCLTAF 464

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF--SKIIETGSCIK 599
                   ++ +        L             L   E    L++    +      +   
Sbjct: 465  EDVDTPRALGNAVGGLCELLLAPARCGDAWERFLIDAECLFRLATNVVPALTGGRLADAV 524

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                    ++ RL+  E    + E  + L +LG LE+RLL+F  + +    E   P    
Sbjct: 525  LPRETLFALLRRLLADERAPFEAEPLTGLQVLGVLETRLLSFRRVFVLDAVEDKLPGAAP 584

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-----IAS 713
              P L   ++  L L  + +    AA++      G   +        +         + S
Sbjct: 585  YEPLLPDPLRRLLKLPDSRERDLVAAYNIYRLFFGAEEITVFYRTGSSGTGLFEDKPVRS 644

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYL----DWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
            R++++LL          L                  +     P               + 
Sbjct: 645  RFVEQLLWEEEKRLGRVLLPGEAPVSLVSVPLCPIPEGDAAMPKSPAVAERLGAYLGEKR 704

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S + +   +  P   + R +  L  +    ++ DR   G + H+ + E     + ++  
Sbjct: 705  LSATFLDTYLTCPLRFFYRYLTPLTPLAEVAEEGDRAAVGQVVHDTLKEFFTPYLGRDID 764

Query: 830  EINHLMKQIIDSHFEKENLPPHIDII---WRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
              +     + D    +  + P  + +    R L  +   + L            + +   
Sbjct: 765  AADIDAAALADLFETRLRVHPAYEALPPDGRLLLLRAGRTRLAAMAAGLPRTTPVALETE 824

Query: 887  AKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET---------------- 928
               +IE    G  L G  DR+D  + G + I DYKTG  P                    
Sbjct: 825  LAASIETAGRGFLLGGRLDRVDRREDG-IVILDYKTGGLPALTQSLWDDEALWGRLSRFT 883

Query: 929  ------------AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
                        A+++   QL L      A           A+  ++ LK+  +   +  
Sbjct: 884  APDDDPELLETVARRVGSLQLPLYCWLYAAS-----QGETPADAAFVELKETGREKPLFG 938

Query: 977  DKKKYSA-DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
             ++  SA +E        L+  V    +    F    R  ++     ++
Sbjct: 939  PRRDQSAREEAITGQTPALLAFVLRHLSMATRF--SPRPDDRRCAYCDF 985


>gi|226365846|ref|YP_002783629.1| ATP-dependent DNA helicase [Rhodococcus opacus B4]
 gi|226244336|dbj|BAH54684.1| putative ATP-dependent DNA helicase [Rhodococcus opacus B4]
          Length = 1108

 Score =  218 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 135/1044 (12%), Positives = 269/1044 (25%), Gaps = 127/1044 (12%)

Query: 30   LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT-------GKKSTILPIIKSLG 82
            LV+             SV +   +KRA   +R E            G ++T  P+++++ 
Sbjct: 74   LVDVAVDRIAGGEDPESVLVLTQSKRAAGRVREEVTAALIGHDEHHGPRATREPLVRTVH 133

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                           N  P      RL+  A    + R  L   I D     P       
Sbjct: 134  SYAFAVLRLQAAAHGNPPP------RLITGAEQDAVLREMLQGDIADGGEMWPER-LRPA 186

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                  A  L D++          EDL  L        W+ A  F               
Sbjct: 187  LPLGGFAVELRDLMLRSSERGLGPEDLIELGRRHDRTEWVAAGMFAARYEH--------- 237

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                        +  EA            + G+  +  AT   +          +++   
Sbjct: 238  -----GMLLRGAVGVEAPEATAPALDAAELIGAALTAFATDPDLLRAERDRVRHLLVDDA 292

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
                P A        +   T+          Y              D      V   +  
Sbjct: 293  QHLDPQAAELVRLVGTGTRTTVVAGDPDQSIYGFRGADPTFLAHLADKGDPRQVLLPVNF 352

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            RS     +     TS +          P      +   ++      +EA  IA  LR + 
Sbjct: 353  RSSADVATTAARITSRLPGHLPHRIWTPAQDGGRTSARVLGTA--AKEAALIADTLRRAH 410

Query: 383  DENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAI 437
              +     + + ++ +       ++  L   G+ +  +A   PL+     S L  +L A+
Sbjct: 411  LLDGVPWSEMAVIVRSVPRALAPLRRALLGAGVPVTTAASELPLARQHGVSGLMLVLRAL 470

Query: 438  -FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
              +         L+  P+          +       L             D  S  L R+
Sbjct: 471  SGQEFTGEDALALLAGPVGG--------AEPVALRRLRRGLRRAELASGGDRDSAELLRL 522

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                         ++L++ +      ++  + +   PL   +  ++        +   + 
Sbjct: 523  LLVGETGSTRRVTAKLTDVEAASLNRVLSVLRKARVPLERGRGIEDVLWAAWQATGLERR 582

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                         +   +L         ++ +   +      +A    ++D +T      
Sbjct: 583  WSAASARGGPIGAQADRDLDAVVALFDAAASYVDRLP-----RAQLAGFVDYLTGQAIPT 637

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673
                 +     + +L    +    +D + + G+ EG+WP   A+   L      DL    
Sbjct: 638  ARTVSVVPRDAVSVLSAHAAAGREWDVVAVAGVQEGLWPSLRARGSLLGTEALIDLTSGV 697

Query: 674  -----------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRL- 719
                        +TA     +        +  R  +   ++     +   + SR++  L 
Sbjct: 698  SDGSETAADRMSRTAPLLAEERRLFLVACSRARRSLLVTAVDSASGDADLVHSRFVDELL 757

Query: 720  ------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR----- 768
                            +   R         +L      P      P     A  +     
Sbjct: 758  AGEQDSDAEEAALPAVDPATRVLALPALVAELRSVVCDPDVADSDPARQERAARQLARLA 817

Query: 769  --------------------------------TYSFSEIKQLINDPYAVYARRILKLDFI 796
                                            + S S +  L   P      R       
Sbjct: 818  EAGVRGAHPDQWYGTAEPSTGVALWNAEDGPVSLSPSTVDLLNTCPLRWLLERHGG---- 873

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
                 D      GTL H     L++    +   +      +      +  +       + 
Sbjct: 874  --RDGDNTHAIAGTLVH----TLVQALAGRIPADQVERALENAWESIDLGSQWYSRRELD 927

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFADRIDLLKSG 911
            R     +  +F       +S + ++ V +     +E        I L G  DR++    G
Sbjct: 928  RTR--DMLATFTAWLGNTRSELTEVGVEVAVDGVLEPREEGSPTIRLRGRIDRLERDAEG 985

Query: 912  FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
               I D KT  +P  +   +    QL+    A   G+       K      + + +  + 
Sbjct: 986  RPVIVDVKTARSPVTKDNAQQHA-QLAAYQVAAAIGAIDGEPASKPGGARLVFVAKPHQK 1044

Query: 972  DCITNDKKKYSADELSEKSLKNLI 995
            +  T   +   ++E  E  L  + 
Sbjct: 1045 EGATQRVQAPLSEEALESWLAVIH 1068


>gi|254495648|ref|ZP_05108570.1| endonuclease [Legionella drancourtii LLAP12]
 gi|254355218|gb|EET13831.1| endonuclease [Legionella drancourtii LLAP12]
          Length = 842

 Score =  218 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 96/701 (13%), Positives = 212/701 (30%), Gaps = 100/701 (14%)

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK-LELTRFGIN--IDIS 416
             ++ A + +EE   +   L++ LDE  ++  ++  D           L +       +IS
Sbjct: 210  KVLAAQDAQEEYQQLMAWLQVKLDEGNQRIGVVVPDLQQKSPTLQRTLAQHFDPALFNIS 269

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
             G  LS     +     LN   +L +    A L++ P       E               
Sbjct: 270  LGQTLSEFPLVAHALCWLNLDTQLLNHHQAALLLQSPYLGGAQEEFLARS------EYLQ 323

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
             G       +   + + D  A                                    L  
Sbjct: 324  DGTLLENQHLPFTTFISDLEANTPK--------------------------------LAA 351

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
               + +      S+ +W       L ++       L +  ++   +           +  
Sbjct: 352  LLKHISPYPKEASVHEWIDYFQERLNSLGFPGDYGLNSENYQCFNRFTLLFDELRQLSLL 411

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
              + N  E ++ + +L+   T+    + ++ + I G LE+    FD+L + GL +   P+
Sbjct: 412  SARLNKAEALEAL-QLLTQNTIFQAQKTTAIVQISGLLEASGCEFDSLWVMGLTDQCLPQ 470

Query: 657  NTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIAS 713
                + F+   +Q +L +      + +  A    +        ++++ +  + + P +  
Sbjct: 471  KVHLSAFIPPQLQRELLMPHSLPARELQFAQQTLKRLQSSAESVVFSYAKLQADNPNLPC 530

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
              +            +                    +    +     P    +  T   +
Sbjct: 531  SLITNHPHFELLPSSNQTPG--------------CDELSALEEHYTVPIQSEEHITGGTA 576

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI------KKRINKN 827
             +      P+  +A   L+           D  +RG + H ++  L       +   N +
Sbjct: 577  ILANQAKCPFKAFAEHRLRAKAASQTTDGLDAKERGQIIHKVMELLWQTLESQQALFNLD 636

Query: 828  TPEINHLMKQIIDSHFE------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
              ++   ++Q I S          E+    I  +      ++  + LE E++  S     
Sbjct: 637  EHQLEQHIEQAIQSALAPLKEQHPESFSAFIQEVEYIRLKRLVCACLEWEKQR-SPFTIA 695

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-ETAQKLIDPQLSLE 940
             +     + +  +   +    DR+D +      + DYK+     K    ++  +PQL L 
Sbjct: 696  ALEQSYTINLAGLDFRV--RVDRLDQVADKKW-VIDYKSSLPSSKPWNEERPKEPQLLLY 752

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKYSADELSEK 989
            A             +++  L +++LK               I  I + KK+   D   + 
Sbjct: 753  ALL----------DKQINTLLFMQLKTGKISCSGFSEEKQGISGIGSLKKEEQWDNCRDN 802

Query: 990  SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
              + L  +    Q G  P             Q +Y +L R 
Sbjct: 803  WHQQLTRLAEEFQQGHCP---PQPAQLTLCQQCDYQNLCRF 840


>gi|31794379|ref|NP_856872.1| ATP-dependent DNA helicase [Mycobacterium bovis AF2122/97]
 gi|121639087|ref|YP_979311.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
            Pasteur 1173P2]
 gi|215432161|ref|ZP_03430080.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis EAS054]
 gi|219559254|ref|ZP_03538330.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17]
 gi|224991579|ref|YP_002646268.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
            Tokyo 172]
 gi|260202355|ref|ZP_05769846.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289444773|ref|ZP_06434517.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289571424|ref|ZP_06451651.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17]
 gi|289755321|ref|ZP_06514699.1| UvrD/Rep family helicase [Mycobacterium tuberculosis EAS054]
 gi|31619975|emb|CAD95319.1| POSSIBLE ATP-DEPENDENT DNA HELICASE [Mycobacterium bovis AF2122/97]
 gi|121494735|emb|CAL73216.1| Possible ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
            Pasteur 1173P2]
 gi|224774694|dbj|BAH27500.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
            Tokyo 172]
 gi|289417692|gb|EFD14932.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289545178|gb|EFD48826.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17]
 gi|289695908|gb|EFD63337.1| UvrD/Rep family helicase [Mycobacterium tuberculosis EAS054]
          Length = 1055

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 128/1077 (11%), Positives = 264/1077 (24%), Gaps = 145/1077 (13%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-- 70
            P +     ++ A +             +P     V +   + R     RS       +  
Sbjct: 27   PGTGKSTLLVEAAVAHIG------AGTDPES---VLLLTGSGRMGMRARSALTTALLRSR 77

Query: 71   ------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
                   +   P+++++              + +  P      RLL  A    I R  L 
Sbjct: 78   TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALP------RLLTSAEQDAIIRELLA 131

Query: 125  DIIKDLYP--ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
               +D      +  +           A  L +++           +L  L   +    W+
Sbjct: 132  GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWI 191

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
             A  F +   +              V      +   A            + G+     A 
Sbjct: 192  AAGQFAQRYEQ--------------VMLLRGAVGLAAPQATAPALSAAELVGAALEAFAV 237

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA--KLL 300
               +          +++       P A        +    +          +     +  
Sbjct: 238  DPELLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPT 297

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFSDV 359
              L             S  +                   R     +  +I         V
Sbjct: 298  GLLADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSV 357

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS 416
             +  A +   EA  IA ALR +   +       A+I      A R+   L   G+ +   
Sbjct: 358  TVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPP 417

Query: 417  A-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            A G PLS       L ++L A     D      L+  P+           R         
Sbjct: 418  AVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRT------L 471

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
             R             LV         +        R+       A       L    P  
Sbjct: 472  QRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDP-- 529

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                 +++       S   +  +   ++      +   +L        ++  +       
Sbjct: 530  -----RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYV-----S 579

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                A+    ++ +T L            +  + +L    +    +D +++ GL +G+WP
Sbjct: 580  RTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWP 639

Query: 656  KNTAKNPFLSRVMQ------------SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
                +   L                     L   E+ +   A            + + + 
Sbjct: 640  NTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAG 699

Query: 704  RENNIPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
               +   + S +   +        +            L     +                
Sbjct: 700  GGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDD 759

Query: 762  PLEAQP--------------------------------------RTYSFSEIKQLINDPY 783
                                                         T + S ++ L + P 
Sbjct: 760  ADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPL 819

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
               A R    +           +  G++ H +  E       ++  ++   + + +  H 
Sbjct: 820  RWLAERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHL 867

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHL 898
                     +         +  +F++   + +S + ++ V +    A+E        I L
Sbjct: 868  PFGAQWYSAN--ELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRL 925

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
             G ADR++   +G + I D KTG  P  +   +    QL++   A+  G     D    A
Sbjct: 926  RGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGA 984

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013
             L Y+       +     D        L+  +      +V  L        FI+   
Sbjct: 985  RLVYVGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQFIARRN 1034


>gi|67459016|ref|YP_246640.1| hypothetical protein RF_0624 [Rickettsia felis URRWXCal2]
 gi|75536548|sp|Q4ULU8|Y624_RICFE RecName: Full=Uncharacterized protein RF_0624
 gi|67004549|gb|AAY61475.1| unknown [Rickettsia felis URRWXCal2]
          Length = 856

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 134/717 (18%), Positives = 251/717 (35%), Gaps = 113/717 (15%)

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
              ++  E ++  EEA++IA           K+ A+IT +  L R     L R+   +   
Sbjct: 209  DGISYYEPNDIYEEAVAIAYI---CSRNKDKRIAIITNNNKLKRVYCNFLDRYEDLL--- 262

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
             G  L  T    +LTS++  +    D   +  L+K+PL            A   LE++  
Sbjct: 263  -GNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLINCS--------ATQKLEVMLS 313

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
              N+       L  L                     +E+ KE    L+D +         
Sbjct: 314  NKNRFISSPKYLLQL------------------QFDNEDTKEYCRNLIDILF-------- 347

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                   T    +I D   LT    + +        P +W +E G  L    + +     
Sbjct: 348  -------TDNPHNILDILTLTKEIAEKLL-------PTIWEKEGGAELVEFLTNLTAYSK 393

Query: 597  -CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                 +  ++  I + L+       K   S+ + I    +  L  FD +IL   N   W 
Sbjct: 394  YINSMDKKDFPKIFSFLLSNIKYY-KNTDSANIIIAPPEDLALCTFDLIILPHFNNENWT 452

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
                 +P+LS+     LN+   E      +  F +    + +I   + + +   ++ S  
Sbjct: 453  PTAKSHPWLSKKALQILNIDYNETASTLYSDYFNLFLQNKQVIILNAKKYDGKLSVPSNL 512

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT----YS 771
              +L  +     +    + G         +D        ++        A   +     S
Sbjct: 513  FLKLQDVIPAVHYVIPAEAGIHL-----DMDSRRCWNDIRKDDIGDESTAHSHSFPSVLS 567

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRINKN 827
             ++I+ LI +PY  YA++IL L    +  ++P  +D G   H ++ E  K    + IN N
Sbjct: 568  VTDIETLIRNPYGFYAKKILGLRKKDNIWEEPKISDFGNFIHKVLEEYSKNYDKQFINLN 627

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
              +  + +  I +       LP +    W+      S +F+  + + + + ++I+     
Sbjct: 628  LLDKQNALINIGNHILYGTILPNYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFETKG 687

Query: 888  KMA--IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
            ++   I    I + G ADRI++ KS  + I DYKTG  P K+  +  + PQL +E+  L 
Sbjct: 688  ELRLNIAGQDIKIIGIADRIEISKSNHITILDYKTGTIPTKKEIELGLSPQLIIESLMLL 747

Query: 946  AGSF------------------SQIDCRKVAN---------------LFYIRLKQKFKID 972
               F                         +                 + Y+++      +
Sbjct: 748  ENGFNIKNENTIVNSVGLGYKARGATPIIIGETTSNDVGKPKSIDYTIAYVKITS---TE 804

Query: 973  CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
                  +   + E   K    LI+++       + F   L LS+     ++Y HL+R
Sbjct: 805  PYVQTTEIALSIETLNKHKAGLIKLLEYYVT-NKSFSYDLNLSK----YNDYLHLSR 856



 Score = 66.5 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 73/218 (33%), Gaps = 46/218 (21%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F +     +++                   V I +P   +  EL+    +    K   LP
Sbjct: 7   FLKSFAEYIIDKL------------EKGTEVQIILPNNFSCLELKKILTDKYKIK---LP 51

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
           II     ++ +K  +D          VS I+ LL ++++I  +++   +  + L      
Sbjct: 52  IIIPFNSLISKKTDSDY---------VSKIEELLIISKIITEYKDLQFNKNESLKA---- 98

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                       A+ L  +I+ +         +  ++      +W     FL+     W 
Sbjct: 99  ------------AEILRKLINDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCFLRWQ 143

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234
           E +      +   +++ L++ E   +       II+ G
Sbjct: 144 EEISLTQKQTKAIHKLKLLQEEIIRIKN---KQIILVG 178


>gi|260188245|ref|ZP_05765719.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289448885|ref|ZP_06438629.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289421843|gb|EFD19044.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
          Length = 1055

 Score =  217 bits (553), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 128/1077 (11%), Positives = 265/1077 (24%), Gaps = 145/1077 (13%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-- 70
            P +     ++ A +             +P     V +   + R     RS       +  
Sbjct: 27   PGTGKSTLLVEAAVAHIG------AGTDPES---VLLLTGSGRMGMRARSALTTALLRSR 77

Query: 71   ------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
                   +   P+++++              + +  P      RLL  A    I R  L 
Sbjct: 78   TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALP------RLLTSAEQDAIIRELLA 131

Query: 125  DIIKDLYP--ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
               +D      +  +           A  L +++           +L  L        W+
Sbjct: 132  GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRPGRPEWI 191

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
             A  F +   +              V      +   A            + G+     A 
Sbjct: 192  AAGQFAQRYEQ--------------VMLLRGAVGLAAPQATAPALSAAELVGAALEAFAV 237

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA--KLL 300
               +          +++       P A        +    +          +     +  
Sbjct: 238  DPELLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPT 297

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFSDV 359
              L             S  +                   R     +  +I         V
Sbjct: 298  GLLADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSV 357

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS 416
             +  A +   EA  IA ALR +   +       A+I      A R+   L   G+ +   
Sbjct: 358  TVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPP 417

Query: 417  A-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            A G PLS       L ++L A     D      L+  P+           R         
Sbjct: 418  AVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRT------L 471

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
             R             LV         +        R+       A       L    P  
Sbjct: 472  QRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDP-- 529

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                 +++       S   +  +   ++      +   +L        ++  +       
Sbjct: 530  -----RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYV-----S 579

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                A+    ++ +T L            +  + +L    +    +D +++ GL +G+WP
Sbjct: 580  RTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWP 639

Query: 656  KNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
                +   L            ++       L   E+ +   A            + + + 
Sbjct: 640  NTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAG 699

Query: 704  RENNIPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
               +   + S +   +        +            L     +                
Sbjct: 700  GGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDD 759

Query: 762  PLEAQP--------------------------------------RTYSFSEIKQLINDPY 783
                                                         T + S ++ L + P 
Sbjct: 760  ADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPL 819

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
               A R    +           +  G++ H +  E       ++  ++   + + +  H 
Sbjct: 820  RWLAERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHL 867

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHL 898
                     +         +  +F++   + +S + ++ V +    A+E        I L
Sbjct: 868  PFGAQWYSAN--ELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRL 925

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
             G ADR++   +G + I D KTG  P  +   +    QL++   A+  G     D    A
Sbjct: 926  RGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGA 984

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013
             L Y+       +     D        L+  +      +V  L        FI+   
Sbjct: 985  RLVYVGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQFIARRN 1034


>gi|313837605|gb|EFS75319.1| UvrD/REP helicase [Propionibacterium acnes HL037PA2]
 gi|314972544|gb|EFT16641.1| UvrD/REP helicase [Propionibacterium acnes HL037PA3]
          Length = 1069

 Score =  217 bits (553), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 127/1006 (12%), Positives = 261/1006 (25%), Gaps = 127/1006 (12%)

Query: 44  LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           L+ V +   T+ + Q LR+  +      + + P + ++  +                   
Sbjct: 50  LSDVLVLAQTRPSAQALRTALVRRLAG-AHLEPQVMTVHALARRIVA------------- 95

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           S  +RLL         R  L       +P+       + A     A ++  +   +  E 
Sbjct: 96  SPSRRLLTAPEQEFRMRELLAARDMSDWPDE----LRTCAGTAQFASDVRVMAARLRQEG 151

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              +DL           W +   FL               A +    +IAL R  A+  +
Sbjct: 152 CDPQDLTDAGVTWGVPEWRVLGPFLADYLDVLDLEGTLDYAEAVHRARIALTRPGADIEV 211

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
           +     +I         +  R +S +A      ++    D       +     +      
Sbjct: 212 RSRIKLLICDDVVECDSSQIRFLSQIARCHIPCVLTA--DPDQTIYGFRGAVAE------ 263

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                         +L + +D   +        +         + +S      +   ++ 
Sbjct: 264 --------------RLDEVIDEFPDVSVHHLATNYRNSQHIAEVVESLRTRMPAVPSSSQ 309

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLAR 400
           +      +       VA + A +       IA  LR +   +    +  A++T       
Sbjct: 310 LRRRANHSAVTEDGTVAAVRAPSMTRLVRKIAGTLRHAHVADGVAWRNMAVVTRHGGELG 369

Query: 401 RVKLELTRFGINIDISAGIPLST-----TLHSSILTSLLNAIFKLNDFM-AIATLVKHPL 454
            +   L    I +  S      +     T   + L   +            +ATL+ +PL
Sbjct: 370 IIATVLAAEDIPVLRSRDEHALSDINAVTHIVNALAIAVALASGRQPSDRDVATLLSNPL 429

Query: 455 AKFGFPEKYLSRAKNAL------------------ELVALRGNKNSYDIMDLKSLVLDRI 496
           A       +       L                           N       ++ V  R 
Sbjct: 430 AGIDRSLVHRLETWCRLVRGIDIDWPLLGELGADPMAAVAAERGNERPEDGSRAEVDGRA 489

Query: 497 ATQKNN----THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                      H  +          +   ++V  + +    L +  +   +       S 
Sbjct: 490 EEAGKEGSETAHEAYSVPPGLRALAQPLAMMVQRVQRAADLLRSDASCHEALWALWQGSS 549

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
           WT    +          R L  L    +    +   + I      I+             
Sbjct: 550 WTSSLRSRALAGDSAADRDLDGLCSLFDMADGAQTMAGIAGARRLIEVVR-------QEQ 602

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           I  +  +   E    + ++     +   FD + + GL EG WP +      +     S  
Sbjct: 603 IPADRARESDEDRDGVSVVTAHRVKGREFDVVAVCGLEEGNWPADNHTGSLVRADRWSPD 662

Query: 673 NLKTA----EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--- 725
           +L  A    E    +        +  R  +   ++         S  +  L  +      
Sbjct: 663 SLVAAPGWSENLRAETRLLLVACSRARRQLLLCTVESAEEGKRPSGLVAGLPHVEDHVDS 722

Query: 726 --------------------DFFDNLKKRGQCYLDWTRKL-DYTTKQPHYKRP------- 757
                                    ++   Q  LD  R       +      P       
Sbjct: 723 LNFTSLTELVGELRRVVVDNSELPGVRAEAQALLDDLRVEKHRGRQLVPQADPSTWWCQG 782

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
            P     A     S S I +L+  P   +  R         F+        G+L H I  
Sbjct: 783 APHQADVAGEIELSASHIGELLTCPRRWFMTRRAGASSGSAFQASI-----GSLVHRICA 837

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSFLEHEEKIQS 876
           E +                  ++  + + ++                   F    +    
Sbjct: 838 ENMGHWSLPG-------ALTELEEAWPEIDVTAEWQRNAKLADAKAAVQRFDGWLQSRHR 890

Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936
            +    V +   + + S    + G  DR++    G   + D KTG +  +ET +     Q
Sbjct: 891 QLIGTEVRVDGTIEVPSGTARVRGSIDRLERDAEGACYVVDLKTGASQSEETKRSHR-LQ 949

Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
           + +  A + +G    I  + V+    + L+       ++      S
Sbjct: 950 IGVYQAVVASGGVKTIGPKPVSGAELVHLQIGAGKGKLSPKVDHQS 995


>gi|126179445|ref|YP_001047410.1| ATP-dependent nuclease subunit B-like protein [Methanoculleus
           marisnigri JR1]
 gi|125862239|gb|ABN57428.1| ATP-dependent nuclease subunit B-like protein [Methanoculleus
           marisnigri JR1]
          Length = 1049

 Score =  217 bits (553), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 142/1037 (13%), Positives = 272/1037 (26%), Gaps = 158/1037 (15%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L+  + E  +    +P         VPT    +E+     E       +   + +L    
Sbjct: 15  LDAFIAEFRKAAARDPFG---TVFIVPTSHLAREIVRRLGEE--GVPVVADAVTTLPGFA 69

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
            + F             +S  +  L LAR++   R  L                      
Sbjct: 70  RKVFLDYATSET----LISGAESRLVLARILAAGRYPLLCTGAV---------------- 109

Query: 146 IWLAKNLADIIDIIETEEKK-WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                +LA + D+I   +      L  L   K           +      +   L E + 
Sbjct: 110 ----DDLATLFDVILMRKVDYPAALGDLATAKSIE--------IARLFDAYRRFLDEHDL 157

Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                     +R  A+    G    + I G  G +P   R   +    P   + + GL  
Sbjct: 158 VDESTLFARTVRLLAD---TGWFRTVYIYGLFGPMP---RAGGSHYARPPRTVFVYGLFE 211

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
            +P        +   ++  S   +     Y+    +   D +      + +       RS
Sbjct: 212 PMPLE-----RDLLFSLRESAEEFHYSIPYTGNPAIFTDDGEWLHPDAVISGDAPDTRRS 266

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--SL 382
            + +                          C   V L E  +   E  +IA  +R   + 
Sbjct: 267 RLAALFSR-----------------SEPVDCCGFVRLAERRDREGEVRAIAQEIRDLVAA 309

Query: 383 DENKKKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                + A+   D   A     E    FG+    S G  LS +     L  +     +  
Sbjct: 310 GVRPDEIAVAFPDFASALPYVEEVFPDFGVPYAASDGRALSASPLVRALLDVAMVPARGY 369

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
               +  L   P   F             L++ +      + +  +  + +      ++ 
Sbjct: 370 RREDVVALATSPYLPFTGGC--------ELDIFSREARITAGNWDERLAALARAAGEERG 421

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
               P        E           + +    L   +  K       +     +      
Sbjct: 422 RPDTPESAKSRLAEKVAAIESARKTVRELFADLSALEATKTLAGHIAAYRSVLERWQAPA 481

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                D                + +   ++       K +  E+  ++ ++  G     +
Sbjct: 482 MPEDGDPDLLEDEARNLGGFSGILAALERLARLLPDEKMSLAEFSSLLAQVAAGTRTGRR 541

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                   +     +  L    L +GGL EG  P+ T + PF +      L  ++ E  +
Sbjct: 542 RSNGGVRVVGVREVAH-LAVPYLFVGGLVEGTMPRLTTRLPFTTDAETRRLGTRSREDIL 600

Query: 682 GQAAHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
            +  + F  A       +  +    E   P + S ++  +      + + +         
Sbjct: 601 REERYYFTAALLSARTRVYLSYPAAEGATPLVHSGFVDAVREAFSPETWGSNDFPDSGLA 660

Query: 740 DWTRKLDYTTKQP-HYKRPKPFPPLEAQPR------------------------------ 768
              R      +       P P P  EA  R                              
Sbjct: 661 AARRAGALLARGEFPVGMPCPIPVREAVRRLNIENYHRKAGYDSPYDGMLDDDPAILAAL 720

Query: 769 --------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
                    +S + ++   + P+  Y  R+L L  +P    D    +RG+L H I     
Sbjct: 721 AERFGEGAVFSPTALETYADCPFRFYLERVLGLAPLPEADPDLTAQERGSLVHRIAYRFY 780

Query: 821 KKRINKNT--------PEINHLMKQIIDSHFEKENLPPHIDIIWRHLF-------HKISH 865
                            +    +        ++           +            +  
Sbjct: 781 SGWTCDGNGPVTGACYADALRRILDAGREEADRFTFETPAWAADKEHLLGSPAAGKGVLE 840

Query: 866 SFLEHEEK-IQSSIEKIFVNIPAK------------------MAIESIGIHLTGFADRID 906
            FL HE +   S        +                     + +    I L G  DR+D
Sbjct: 841 RFLRHEAEVAASRFVPHAFEVSFGLPLVPGEVDAVSIPDAVAIPLGEETIRLRGRVDRVD 900

Query: 907 LLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL 965
           +L  G   ITDYKTG + P+    +     QL L   A++    +      VA  +YI  
Sbjct: 901 VLTDGRFMITDYKTGSSHPRLRDIEAGKALQLPLYLRAVE----TLTGREGVAGTYYILR 956

Query: 966 KQKFKIDCITNDKKKYS 982
           + +     +  D     
Sbjct: 957 RGEVTNKPVFWDAGLKD 973


>gi|255534060|ref|YP_003094432.1| ATP-dependent nuclease subunit B [Pedobacter heparinus DSM 2366]
 gi|255347044|gb|ACU06370.1| ATP-dependent nuclease subunit B [Pedobacter heparinus DSM 2366]
          Length = 951

 Score =  217 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 132/1058 (12%), Positives = 285/1058 (26%), Gaps = 195/1058 (18%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
            PF +E+   L+                 L    I    KR    L+    ++  KK    
Sbjct: 3    PFLQEVAADLVARFG-----------DGLQHCAIIFNNKRPAAYLQKHLADLI-KKPFFS 50

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
            P   ++ +   +     +   Y          +   L ++      +            P
Sbjct: 51   PSFFTVQEFFAKWTNYRIADFY---------IQFFTLHKIYNQLLKEEGMESISGNKFFP 101

Query: 136  LSLPISPANA-----IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW-------LL 183
            L+  I    A     +  A  +   ++ I    K ++ L   + +    +W         
Sbjct: 102  LAKIILADFAQIDIDLVDADKIYRDLEDISVINKDFDYLSPEQYQYLSQFWTSYSEGKHK 161

Query: 184  AADFLKI--------ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
                L I            +   L E    +                           G 
Sbjct: 162  RQQELFIKMWRRMPKLYHQFHTALKEQGFVTNGAVYR---------------------GL 200

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
                      +        G I+  G +                                
Sbjct: 201  AEGNAGEQNFIK---GFDKGKIIFAGFNALSNAE-------------------------- 231

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
             AK+   L    + +      S  +              +   +   ++ EN    I+  
Sbjct: 232  -AKVFVNLQKAGKALFYFDADSYYLDDPLQEAGLFLR-KNIYQLGIKNVFENNPSLIRTE 289

Query: 356  FSDVALIEADNEREEAISIAIALRM--SLDENKKKSALITADRNLARRVKLELTRFGI-- 411
               V +     +  +A  +   L+   + +   +   ++ AD +L       +       
Sbjct: 290  KHCVDVYSVQGQTAQAKILNNILKEDYANEAESQSVVVVLADESLLIPTLQTIPTNHNGR 349

Query: 412  --NIDISAGIPLSTTLHSSILTSLLNAIFK-----LNDFMAIATLVKHPLAKFGFPEKYL 464
               ++++ G  L+ +    ++        +        +  +   + HPL       +  
Sbjct: 350  ELELNVTMGFALAASGVYGLIDLWSGCQLEIQQTGRLSYKNVEAFLTHPLTGLRQAMRDK 409

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                   E           +   L  +   ++                     E+   L+
Sbjct: 410  INTALLAEKEIEVPYTRLVNQKGLFEVFFKKLLHAG-----------------EVMEQLL 452

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
            + +   +  L      K         ++     +  L  +     + + +          
Sbjct: 453  EVMNFVLARLSHAGNLKKID------AELFAKAIQELNRLYDTFGKHVDHEE-------- 498

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
                                 I ++ + + G  V    +    + ++G LE+R LNFD +
Sbjct: 499  -----------------IPFIISLVQKAVMGLAVPLSGDPLKGIQVMGLLETRNLNFDKV 541

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTR-S 702
            ++ G NEG+ PK++  N F+   ++    L   E     +A+           + +   S
Sbjct: 542  VMLGFNEGIVPKSSVGNSFIPDSIRRVYGLPVLENQDAISAYMVYRLIQRASDVSFVYNS 601

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
            L ++      SR L++L    G +F  +                        ++      
Sbjct: 602  LTDDATSGEPSRILKQLAYESGFEFNYHTLDLNVRTEPLKEITIKKEGNEAIQQG--LQR 659

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK- 821
               + +T S S + Q I +P   +   I  +          +  + G++ H ++    K 
Sbjct: 660  YLNKQKTLSPSALTQYILNPIDFFFNYIAGIKEPKEISAVVEANEVGSILHKVMEYFYKD 719

Query: 822  ----KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE-------H 870
                +       E    +  +    F                  K+  + +E        
Sbjct: 720  CIRQEITLPLLKEKRKKIPALTQKAFAAVIFNNPEKQAEFKGMQKVILAIVEAYVNIIVS 779

Query: 871  EEKIQSSIEKIFVN--IPAKMAIESIG----IHLTGFADRIDLLKSGFVDITDYKTGD-N 923
            +++ Q+      +   + A ++    G    I + G  DR+D LK G   I DYKTG   
Sbjct: 780  QDERQTPFMIESLEQWVEADISFPLGGRAASIRIGGIIDRVD-LKDGITRIIDYKTGSDK 838

Query: 924  PKKETAQKLIDP----------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
               +   +L +           Q  L     +   FS     +     Y+      +   
Sbjct: 839  LNYKDIPELFNTDGKHINKALIQTLLYTYIYEQ--FSGKTAVEPN--LYVVKTMSQEGVW 894

Query: 974  ITNDKKKYS---ADELSEKSLKNLIEIVTLLQNGEQPF 1008
              + ++  S    +E+  + L  L E +T L   E P+
Sbjct: 895  FKSGRQSLSGSYLEEVKPEFLSALKEKLTELF--EAPY 930


>gi|305665913|ref|YP_003862200.1| hypothetical protein FB2170_06515 [Maribacter sp. HTCC2170]
 gi|88710688|gb|EAR02920.1| hypothetical protein FB2170_06515 [Maribacter sp. HTCC2170]
          Length = 916

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 129/1007 (12%), Positives = 297/1007 (29%), Gaps = 160/1007 (15%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
                 +P+KRA   LR+   +IT   +   P I S+ + +                  +N
Sbjct: 21   DTIFILPSKRAGTFLRNSLAKITSN-TIFSPEIFSIEEFIGNISGLSTA---------TN 70

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             ++L EL    L      P+   D                    + L   I+ I+     
Sbjct: 71   TRQLFELYYAYLEQNKGNPEHFLDFS---------------KWGQTLLQDINEIDRYLID 115

Query: 166  WEDL-HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
             + L   L   +    W             +            + +   L +       +
Sbjct: 116  VDGLFSNLSAIQEINHW-------------YLASEKTKMVEDYIKFWNNLHQLYIAFNER 162

Query: 225  GTKGPIIIAGSTGS--IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
              +  I   G  G     A  ++ + +  + +   +  G         +N +    +N  
Sbjct: 163  LLQKKI---GHQGLIYRKAHEKVETYLEANKSTQHIFIG---------FNALNTSESN-- 208

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                            ++  +   +         +  +                      
Sbjct: 209  ----------------IIQRILETKNAQIYWDADTYYLNDPIHDAGYFIRDHKKKWPYLQ 252

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLA 399
            +     I        ++ +        +   +   LR   +EN       A++ +D  L 
Sbjct: 253  NNTLKGISTTFLQEKNIQIAGVPKNVSQVKFVGSLLRTLNNENSDTLKRTAIVLSDEALL 312

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA----IFKLNDFMAIATLVKHPLA 455
              +   +      ++I+ G PL+ +   +      N           +  +   +     
Sbjct: 313  NPLLNAIPSEIEKVNITMGYPLNKSPFDNFFNQFFNLYITKQNNGWYYKNVLNFLSDANT 372

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                 ++            +L       ++  L + +++ +A   N T    +       
Sbjct: 373  HLLLDDQD------ENMPESLISGIKLNNLTFLNNNIINSLAKNPNKTLTQLF------- 419

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
              E        I  C+  +   KT   ++   L++ +  +                    
Sbjct: 420  -FEQIPSPNQFIEHCLQIISILKTKLQASENKLALEELFR-------------------- 458

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   ++ +   ++I       ++      +   L+  E +  K +    L ++G LE
Sbjct: 459  -----FYSVFNQMQQLI-KEHDFISDLKSLQALFVELLSMENLDFKGDPLEGLQLMGMLE 512

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694
            SR L+F+T+I+  +NEG+ P   + N F+   ++    L T ++      + F       
Sbjct: 513  SRNLDFETVIITSVNEGIIPSGKSNNSFVPLDLKRAFGLPTFKEKDAVYTYHFYRLLQRA 572

Query: 695  RHLIYTRSLRENNIP-TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
            +++    +   + +     SR + +L          +         +   +++   +   
Sbjct: 573  KNVYLVYNTEPDVLEGGERSRLITQL---LTDTNIKDNITEFIAVPEIKVEINKENQITK 629

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                      E   + +S S +   I +P   Y + +L ++ +   ++       GT+ H
Sbjct: 630  DA-SLVNLIKELATKGFSPSSLSNYIRNPMDFYKQNLLGINDLMEVEETVAANTFGTIIH 688

Query: 814  NIITELIKKRINK-----NTPEINHLMKQIIDSHFEK----ENLPPHIDIIWRHLFHKIS 864
            + + +L K  I +         +   +  ++  HF K     N     ++I  ++  K  
Sbjct: 689  DTLEDLYKPFIGRYLNKEVLKGMKANITALVKKHFAKTYSNLNTIQGKNLIAYNVIIKYV 748

Query: 865  HSFLEHEEK--IQSSIEKIFVNIPAKMAIE----SIGIHLTGFADRIDLLKSGFVDITDY 918
             +F++ E K    S I+ + +    ++ +        + L G  DRID  K G + I DY
Sbjct: 749  ENFIDLEIKQCQDSQIKILGLEEKMEITMNMPELGFPVKLKGKLDRIDE-KDGVLRILDY 807

Query: 919  KTGDNPKKETAQKL------------IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
            K+G        +                 QL   A      +   ++  +   + +  L 
Sbjct: 808  KSGKVM-LNQVEIFDWSLITEDFKFSKAFQLLCYALMFNDKA--PLNQLEAGIVSFKNLN 864

Query: 967  QKFKIDCITNDKKKYSAD-----ELSEKSLKNLIEIVTLLQNGEQPF 1008
                       +   S D     E  +     L  ++  + +   PF
Sbjct: 865  AGTLSFATKEKRNSRSKDKTITTETLKTFSTELKRLIIEICDPNIPF 911


>gi|30250112|ref|NP_842182.1| hypothetical protein NE2178 [Nitrosomonas europaea ATCC 19718]
 gi|30139219|emb|CAD86089.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
          Length = 909

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 111/730 (15%), Positives = 239/730 (32%), Gaps = 86/730 (11%)

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRVK------- 403
            +      +  +   + R+E    A  +R  L+EN   + AL+  +    R +        
Sbjct: 223  LSGQPDRIGKLACADGRDEIRQAARWIRQRLEENPAARIALVVPELAAQREMICQTLDEV 282

Query: 404  ---LELTRFGIN----IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
                 L     +     ++S G PL      S+   +L     + +   ++ +++     
Sbjct: 283  LIPQALQPEHHDRVRSYNLSLGKPLDRYPPVSLALDVLGLSETVIELPHVSRVLRSSFIA 342

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
             G  E       +A                 L+      +  QK  T+        S   
Sbjct: 343  GGDREMNARALLDAR----------------LRESGEWNLTLQKLLTNAARSGQPYSCPL 386

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                             L         +    S  +W +     L+ +     R L +  
Sbjct: 387  LAEC-------------LSNLMKQVKVSLAPTSPGEWAQRFGQWLKAIGWPGERGLSSEE 433

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            ++        L             +  E +  +  ++ G   +P+  ++  + +LG  E+
Sbjct: 434  YQVIQAWQGVLREFSTLDWVIRSVSLTEALQQLRHMVAGTIFQPESAEAP-VQVLGLFET 492

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEM-ANG 693
              L FD L + GL++GV+P ++  NPFL   +Q +++    +A + +  AA   +     
Sbjct: 493  SGLQFDYLWIMGLHDGVFPASSRPNPFLPLTLQREVDAPHSSARRELRVAAALLQRITTN 552

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
               ++ +   R+ +    +S  +     L         +   +  +  +R+ +       
Sbjct: 553  ATEVVISYPQRKGDEILDSSPLIDAFPALSEEMLAMGTQSAWRDSVYHSRQQE------- 605

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                   P              K     P+  +A   L    +   +   +   RGTL H
Sbjct: 606  VLSEDVAPTFVGTGIPGGSKLFKLQAACPFRAFAELRLVARPLGRIQIGLNALVRGTLLH 665

Query: 814  NIITELIKKR------INKNTPEINHLMKQIIDSHFEKENLP------PHIDIIWRHLFH 861
             ++  +  +        N +  E+N L+   ++    +            +  +     H
Sbjct: 666  RVMEMVWAELDSLAALANLSPGELNALVAGKVNEAIYEIAPRYPHTFGERLQALESKRLH 725

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
             +  ++LE E++           +  ++ +  + I+L    DRID L+ G   + DYKTG
Sbjct: 726  ALVLAWLEMEKQR-PPFRVSGREMETELELNGLRINL--RIDRIDTLEEGGELLIDYKTG 782

Query: 922  DNP-KKETAQKLIDPQLSLEAAA-----LKAGSFSQIDCRKVA----NLFYIRLKQKFKI 971
            +         +  +PQL L + A     L   +F++I    +A        + +      
Sbjct: 783  EVKASAWFGDRPDEPQLPLYSLAFTDDGLAGIAFARIRAGDIAFEGVASEEVSILGIKSF 842

Query: 972  DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS--NIQSEYDHLAR 1029
            + + + ++  S DE+     + + ++V     GE    + +   +        E   L R
Sbjct: 843  ENLRHTREAASWDEVLAGWRQTIEQLVQDFMAGE----ARVSPKQYPQTCTYCELKPLCR 898

Query: 1030 VAEWREEYDI 1039
            + E  E  D 
Sbjct: 899  IGESLEAVDD 908


>gi|169630597|ref|YP_001704246.1| ATP-dependent DNA helicase [Mycobacterium abscessus ATCC 19977]
 gi|169242564|emb|CAM63592.1| Probable ATP-dependent DNA helicase [Mycobacterium abscessus]
          Length = 1058

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 132/1037 (12%), Positives = 266/1037 (25%), Gaps = 122/1037 (11%)

Query: 30   LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI----EITGKKSTILPIIKSLGDVV 85
            LV+         +  ASV +   + RA  ELR+       E     +   P+++++    
Sbjct: 41   LVDIVAAHTAAGVNPASVLVLTGSNRASAELRNRISAAVFERCAGVAIREPMVRTVHSYA 100

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                 A      N  P      RL+  A    I R  L    +D     P SL  + A A
Sbjct: 101  FAVLAAHAACQGNPPP------RLITAAEQDSIVRELLCGNAEDNSGSWPASLRPALATA 154

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
               A  + D++           +L A+        W+  A   +   +            
Sbjct: 155  -GFATGVRDLMARCTERGVDARELRAIGRRHNRPEWIAVAGLAREYEE------------ 201

Query: 206  SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
              V    + +   A        G   + GS     A    M          +++      
Sbjct: 202  --VMLLRSAVGMAAPQATVPALGAAELVGSALETFAVEPGMLAAERDRIELLLVDDAQHL 259

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
             P A                        +        L     D +    +         
Sbjct: 260  DPQAALLVRLLAERAGFCVIAGDPNQTVFGFRGADTQLLQVSADSR--TTMIELDGSHRC 317

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                + L    +           I  ++   + V L     E  EA  +   LR S   +
Sbjct: 318  AAPIAELANSVARRLPGSSPARVIHGVENGPAAVRLAAVPTETAEASLVVDLLRRSHLID 377

Query: 386  K----KKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHSSILTSLLNAIFKL 440
                 + + ++ +       +   L   G+ +   S   P+++      L   ++A    
Sbjct: 378  GVPWSRMAVIVRSVPRSGAALCRALQSAGVPVHAESYDGPVASVPAVHALLLAVSAAQGG 437

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
                   TL   PL +       L R +  L                L++++++   T  
Sbjct: 438  VTHEDAVTLATGPLGRV--DPVALRRLRRQLLRAEEAAGGERGSAELLRAVLVEADETHL 495

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                        ++        +   I        +  +  +      + S   +     
Sbjct: 496  AAL---------TDIQAAPLRRVRAVIGAAREATASGASVLDVLWAAWTRSGLQRRWDGL 546

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
             Q       +   +L   +   +L  L S+ +     I    +        L+   T + 
Sbjct: 547  SQRGGPLGAQADRDL---DAVSSLFDLASEHVARTPGIGVTGLIDHIRSLALVGQRTTRL 603

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK----------NPFLSRVMQS 670
            +      + I+    +    +D + + G+ EG+WP    +          +        +
Sbjct: 604  EP---DAVAIVSAHAAVGREWDVVAIPGVQEGLWPNTAVRGGVLRTQELMDVLAGIEHAA 660

Query: 671  DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE----NNIPTIASRWLQRLLVLGGTD 726
             ++         +      +    R ++ T    E       P +ASR+L  L+      
Sbjct: 661  HVDGSAVALAEERRLLLLAVGRAARRVLITAVENENADMGGGPAMASRFLTELMAAHPEW 720

Query: 727  FFDNLKK-----RGQCYLDWTRKLDYTTKQP----------------------------- 752
                 +      R     +   +L      P                             
Sbjct: 721  VISEYRPGAAQSRVLTAANLVGELRAVVTAPVEAVTDARRRAAARQLARLAAAGVPGADP 780

Query: 753  -------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                        +P    E  P   S S ++ L+  P      R    D           
Sbjct: 781  ESWYGLGDVSDERPLWLAEDGPVRVSPSNVETLMACPLRWMLERHGGTDLTDPR------ 834

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
               GTL H ++    +        +               E+     +       H++  
Sbjct: 835  RALGTLVHELVGVHAED------SDAMCRALDKAWESMPFESQWYARN--ELRRHHELLE 886

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIG---IHLTGFADRIDLLKSGFVDITDYKTGD 922
            +F       +  + ++   I     +   G   + L G  DR++    G   + D KTG 
Sbjct: 887  AFTTWRASTRGELTEVGREIGVDGVLSRAGQPQVRLVGRIDRLERDAEGRPVVIDIKTGK 946

Query: 923  NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +P  +   +    QL+    A   G               + + +    D  T   +   
Sbjct: 947  SPATKDDAQQHA-QLAAYQVAAAEGLIEGEPAGAPGGGRLVYIAKPNLDDGATQRHQDPL 1005

Query: 983  ADELSEKSLKNLIEIVT 999
                 +   +++     
Sbjct: 1006 TPAAQDAWRESIHNAAA 1022


>gi|314927514|gb|EFS91345.1| UvrD/REP helicase [Propionibacterium acnes HL044PA1]
          Length = 1066

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 127/1006 (12%), Positives = 261/1006 (25%), Gaps = 127/1006 (12%)

Query: 44  LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           L+ V +   T+ + Q LR+  +      + + P + ++  +                   
Sbjct: 47  LSDVLVLAQTRPSAQALRTALVRRLAG-AHLEPQVMTVHALARRIVA------------- 92

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           S  +RLL         R  L       +P+       + A     A ++  +   +  E 
Sbjct: 93  SPSRRLLTAPEQEFRMRELLAARDMSDWPDE----LRTCAGTAQFASDVRVMAARLRQEG 148

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              +DL           W +   FL               A +    +IAL R  A+  +
Sbjct: 149 CDPQDLTDAGVTWGVPEWRVLGPFLADYLDVLDLEGTLDYAEAVHRARIALTRPGADIEV 208

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
           +     +I         +  R +S +A      ++    D       +     +      
Sbjct: 209 RSRIKLLICDDVVECDSSQIRFLSQIARCHIPCVLTA--DPDQTIYGFRGAVAE------ 260

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                         +L + +D   +        +         + +S      +   ++ 
Sbjct: 261 --------------RLDEVIDEFPDVSVHHLATNYRNSQHIAEVVESLRTRMPAVPSSSQ 306

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLAR 400
           +      +       VA + A +       IA  LR +   +    +  A++T       
Sbjct: 307 LRRRANHSAVTEDGTVAAVRAPSMTRLVRKIAGTLRHAHVADGVAWRNMAVVTRHGGELG 366

Query: 401 RVKLELTRFGINIDISAGIPLST-----TLHSSILTSLLNAIFKLNDFM-AIATLVKHPL 454
            +   L    I +  S      +     T   + L   +            +ATL+ +PL
Sbjct: 367 IIATVLAAEDIPVLRSRDEHALSDINAVTHIVNALAIAVALASGRQPSDRDVATLLSNPL 426

Query: 455 AKFGFPEKYLSRAKNAL------------------ELVALRGNKNSYDIMDLKSLVLDRI 496
           A       +       L                           N       ++ V  R 
Sbjct: 427 AGIDRSLVHRLETWCRLVRGIDIDWPLLGELGADPMAAVAAERGNERPEDGSRAEVDGRA 486

Query: 497 ATQKNN----THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                      H  +          +   ++V  + +    L +  +   +       S 
Sbjct: 487 EEAGKEGSETAHEAYSVPPGLRALAQPLAMMVQRVQRAADLLRSDASCHEALWALWQGSS 546

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
           WT    +          R L  L    +    +   + I      I+             
Sbjct: 547 WTSSLRSRALAGDSAADRDLDGLCSLFDMADGAQTMAGIAGARRLIEVVR-------QEQ 599

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           I  +  +   E    + ++     +   FD + + GL EG WP +      +     S  
Sbjct: 600 IPADRARESDEDRDGVSVVTAHRVKGREFDVVAVCGLEEGNWPADNHTGSLVRADRWSPD 659

Query: 673 NLKTA----EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--- 725
           +L  A    E    +        +  R  +   ++         S  +  L  +      
Sbjct: 660 SLVAAPGWSENLRAETRLLLVACSRARRQLLLCTVESAEEGKRPSGLVAGLPHVEDHVDS 719

Query: 726 --------------------DFFDNLKKRGQCYLDWTRKL-DYTTKQPHYKRP------- 757
                                    ++   Q  LD  R       +      P       
Sbjct: 720 LNFTSLTELVGELRRVVVDNSELPGVRAEAQALLDDLRVEKHRGRQLVPQADPSTWWCQG 779

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
            P     A     S S I +L+  P   +  R         F+        G+L H I  
Sbjct: 780 APHQADVAGEIELSASHIGELLTCPRRWFMTRRAGASSGSAFQASI-----GSLVHRICA 834

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSFLEHEEKIQS 876
           E +                  ++  + + ++                   F    +    
Sbjct: 835 ENMGHWSLPG-------ALTELEEAWPEIDVTAEWQRNAKLADAKAAVQRFDGWLQSRHR 887

Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936
            +    V +   + + S    + G  DR++    G   + D KTG +  +ET +     Q
Sbjct: 888 QLIGTEVRVDGTIEVPSGTARVRGSIDRLERDAEGACYVVDLKTGASQSEETKRSHR-LQ 946

Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
           + +  A + +G    I  + V+    + L+       ++      S
Sbjct: 947 IGVYQAVVASGGVKTIGPKPVSGAELVHLQIGAGKGKLSPKVDHQS 992


>gi|296107860|ref|YP_003619561.1| RecB family exonuclease, hypothetical [Legionella pneumophila 2300/99
            Alcoy]
 gi|295649762|gb|ADG25609.1| RecB family exonuclease, hypothetical [Legionella pneumophila 2300/99
            Alcoy]
          Length = 831

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 100/703 (14%), Positives = 218/703 (31%), Gaps = 104/703 (14%)

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR---FGINIDIS 416
             +  A +++ E   +   L   + + KK+  ++  +      V   + R        +IS
Sbjct: 197  EVFSAKDKKTEYQELMTWLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFEPNLFNIS 256

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
             G PLS     S     L+    L +    A L++ P       E               
Sbjct: 257  LGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFLQRS---------- 306

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                                    +           S   K     +  H  +    L  
Sbjct: 307  ------------------------DYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKN 342

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                   T    ++ +W +L    L  +       L +  ++   +           +  
Sbjct: 343  MNFYPEKT----TLDEWIELFQERLNGIGFPGDYVLNSEDYQCFNRFTMIFDEFRQLSLI 398

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                   E  + + +LID    +P+   S  + ILG LE+    FD+L + GL +   P+
Sbjct: 399  SSHLTKTEAFETLKQLIDNTIFQPQKSNSP-IQILGLLEASGCEFDSLWVMGLTDRCLPQ 457

Query: 657  NTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIAS 713
             T  +PF+   +Q +L +      + +  A    +     +   +++    +++ P +  
Sbjct: 458  QTRLSPFIPFELQRELGMPHSIPARELQYAKQILQRLQRGSMETVFSYPQFDDDTPNLPC 517

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
              +            +    +                    +     P    +  +   S
Sbjct: 518  SLIIHYPAYLSRPADNKTNVQS--------------CLVPLEENYEVPVKPDESISGGTS 563

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------ 827
             +      P+   A+  LK + +       D  ++G L H I+  L ++  N+       
Sbjct: 564  LLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEHLIKLK 623

Query: 828  TPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
              E+   + Q I            +  P  +  +      +I  S+LE E++     +  
Sbjct: 624  PAELERFIDQAIQGALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQR-PPFKIT 682

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNPKKETAQKLIDPQLS 938
             +     + +  +   +    DR+D + +    + DYK+   G  P     ++ ++PQL 
Sbjct: 683  GLEENHSINLAGLDFKV--RVDRLDEVGNKQW-VIDYKSTLPGGKP--WNEERPMEPQLL 737

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKYSADELS 987
            L A   +          ++  L  I+LK                  I   K+  S ++  
Sbjct: 738  LYALLNE----------QINTLLLIQLKTGKIKLSGFSEEKWDTKEINTLKEDESWEDYR 787

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
            ++ L+ L  +   +++    + S    +     + ++ +L R 
Sbjct: 788  QRWLEQLTHLAEEIKS---GYCSPRPQNLNICQRCDFQNLCRF 827


>gi|148359813|ref|YP_001251020.1| RecB family transporter exonuclease [Legionella pneumophila str.
            Corby]
 gi|148281586|gb|ABQ55674.1| RecB family exonuclease, hypothetical [Legionella pneumophila str.
            Corby]
          Length = 848

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 100/703 (14%), Positives = 218/703 (31%), Gaps = 104/703 (14%)

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR---FGINIDIS 416
             +  A +++ E   +   L   + + KK+  ++  +      V   + R        +IS
Sbjct: 214  EVFSAKDKKTEYQELMTWLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFEPNLFNIS 273

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
             G PLS     S     L+    L +    A L++ P       E               
Sbjct: 274  LGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFLQRS---------- 323

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                                    +           S   K     +  H  +    L  
Sbjct: 324  ------------------------DYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKN 359

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                   T    ++ +W +L    L  +       L +  ++   +           +  
Sbjct: 360  MNFYPEKT----TLDEWIELFQERLNGIGFPGDYVLNSEDYQCFNRFTMIFDEFRQLSLI 415

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                   E  + + +LID    +P+   S  + ILG LE+    FD+L + GL +   P+
Sbjct: 416  SSHLTKTEAFETLKQLIDNTIFQPQKSNSP-IQILGLLEASGCEFDSLWVMGLTDRCLPQ 474

Query: 657  NTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIAS 713
             T  +PF+   +Q +L +      + +  A    +     +   +++    +++ P +  
Sbjct: 475  QTRLSPFIPFELQRELGMPHSIPARELQYAKQILQRLQRGSMETVFSYPQFDDDTPNLPC 534

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
              +            +    +                    +     P    +  +   S
Sbjct: 535  SLIIHYPAYLSRPADNKTNVQS--------------CLVPLEENYEVPVKPDESISGGTS 580

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------ 827
             +      P+   A+  LK + +       D  ++G L H I+  L ++  N+       
Sbjct: 581  LLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEHLIKLK 640

Query: 828  TPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
              E+   + Q I            +  P  +  +      +I  S+LE E++     +  
Sbjct: 641  PAELERFIDQAIQGALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQR-PPFKIT 699

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNPKKETAQKLIDPQLS 938
             +     + +  +   +    DR+D + +    + DYK+   G  P     ++ ++PQL 
Sbjct: 700  GLEENHSINLAGLDFKV--RVDRLDEVGNKQW-VIDYKSTLPGGKP--WNEERPMEPQLL 754

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKYSADELS 987
            L A   +          ++  L  I+LK                  I   K+  S ++  
Sbjct: 755  LYALLNE----------QINTLLLIQLKTGKIKLSGFSEEKWDTKEINTLKEDESWEDYR 804

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
            ++ L+ L  +   +++    + S    +     + ++ +L R 
Sbjct: 805  QRWLEQLTHLAEEIKS---GYCSPRPQNLNICQRCDFQNLCRF 844


>gi|283852070|ref|ZP_06369344.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B]
 gi|283572460|gb|EFC20446.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B]
          Length = 989

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 146/1067 (13%), Positives = 301/1067 (28%), Gaps = 146/1067 (13%)

Query: 11   IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE-ITG 69
            I  +  FF  +   L+  T  +                +  P +RA + L          
Sbjct: 7    IPWTEEFFAGVADRLVAETGGD-----------FQDTLVIFPLRRAARHLCDRLAAMPGL 55

Query: 70   KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129
             K  +LP I ++GD      +    L+      +  + R+  L  ++     +       
Sbjct: 56   PKPLLLPEITAVGDWA---TSLGASLAPTPPVMLDVLDRVSLLHDIVREIAPE------- 105

Query: 130  LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
               E+    P+           LA++++ +       +DL  L   +           L 
Sbjct: 106  --AEATGEFPLDMTRFFPWGLELAELMEALFRHNIPGKDLDYL-EGQVLPPAAALLSRLG 162

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
                 + ERL+    ++P              + +     +   G +    A   L   +
Sbjct: 163  AIHARYRERLLAEGLATPGLCLSLAAGKAQVAVERLAGRRVFACGFSVLSGAEKALFKAL 222

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                    +L   D  +                                          +
Sbjct: 223  WRS-GSLEMLWHGDPALADPGGRVHFACL------------------------------E 251

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
             KR     N          +          R T +L+    N+      +   E  +   
Sbjct: 252  QKRWLGDWNARAVVLQGGRRRRSRQKGDPDRPTLMLDATTANLSS--KRLRFFEGHDLHA 309

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
            +  ++   L  +  E+ + +A++  D  L   V   L R   +++IS G PL+ +  + +
Sbjct: 310  QLKALETCLAEA--EDLEDTAIVLPDTGLLSPVLHILPR--KDVNISMGYPLARSSLARL 365

Query: 430  L-----TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
            L                 +  +  L++HP  K             AL      G +    
Sbjct: 366  LETILALQETRLASGRYHWRTLVALLRHPYLKML--RVGEEEPLRALFHTLEAGLRQGGA 423

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              D  +L +       +                       + +  C   L T  T  +  
Sbjct: 424  FADPLALEIGGEDGPPDP----------------------EALALCRQVLHTCLTGFSDV 461

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                ++ +        L +           L   E    L++     + +G    A   +
Sbjct: 462  DTPRTLGNALAGLCELLLDPDHAGDAWERFLIDAECLFRLATGVVPALTSGRLADAVLPQ 521

Query: 605  W--IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
                 ++ RL+  E V  + E  + L ++G LE+RLL+F  + +    E   P +    P
Sbjct: 522  ATLFALLRRLLADERVPFEAEPLTGLQVMGVLETRLLSFRRVFVLDAVEDKLPGSAPYEP 581

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTR------SLRENNIPTIASRW 715
             L   ++  L L  + +    AA++      G   +          +    +   + SR+
Sbjct: 582  LLPDTLRRLLALPDSRERDLVAAYNIYRLFFGAEEITVFYRTGAPGAGLFEDSKPVRSRY 641

Query: 716  LQRLLVL----GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            +++LL       G              L            P               +  S
Sbjct: 642  VEQLLWEEEKRLGRVLTPGEPPVSLITLPLCPIPPADASLPRSPAVAERLDSYLSTKKLS 701

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             +     +  P   + R +  L  +    ++ DR   G + H ++ E     + ++    
Sbjct: 702  ATFFDTYLACPLRFFYRYLSPLAPLAEVAEEGDRAAVGEVVHEVLREFFAASLGRDIDAA 761

Query: 832  NHLMKQIIDSHFEKENLPPHIDII---WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
            +     + D +  +    P    +    + L  +   + L H          + +     
Sbjct: 762  DINAAALADLYETRMRQSPACQALPPDGQLLLLRAGRTRLMHMAASMPRTTPLALETELG 821

Query: 889  MAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-------------------- 926
             ++E       L G ADR+D  + G + I DYKTG  P                      
Sbjct: 822  ASLETAGRTYLLAGRADRLDRREEG-LVILDYKTGSVPSLPVAVWGDEGFWSRIARWRGP 880

Query: 927  --------ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                    E A+++   QL L      A           A+  ++ L+       +   +
Sbjct: 881  ADDPGLFEEAARRIGSVQLPLYCWLYAAS-----KGETPADAAFVELRDAGAEKPLFGPR 935

Query: 979  -KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
                  ++   +   +L+  +       Q F    R  ++     ++
Sbjct: 936  LDPAGREDAIVRQTPDLLAFLLRHLATAQAFP--PRPDDRRCPYCDF 980


>gi|332885567|gb|EGK05813.1| hypothetical protein HMPREF9456_02077 [Dysgonomonas mossii DSM 22836]
          Length = 963

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 151/1049 (14%), Positives = 310/1049 (29%), Gaps = 162/1049 (15%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
            PF   +  A           Y   +   ++  T   P +RA    +    +I   K    
Sbjct: 3    PFLYNVAQA-----------YYKADGQNISRYTFVFPNRRAGVFFQHYLSQIAD-KPIFS 50

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK-LPDIIKDLYPES 134
            P I ++ D+ E+                  I+ L  L  +                + E 
Sbjct: 51   PQILTIADLFEQLS---------PYKKADRIEMLFMLFNIYKQVGKTNETFDEFLYWGEM 101

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
             L+        +  A+ L   I  ++  +  +  L                  +++  ++
Sbjct: 102  LLNDFDDIDKYLVDAQQLFRNIKDLKDIDAGFSYLTE--------------TQIEVIRRF 147

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            W+  L               +    +         ++    +         ++       
Sbjct: 148  WSNFLP--------------VGENEKKKDFLEMWEVLFQLYSSL----RYQLAEKDQAYE 189

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
            G I    +D       ++   +                  S  KLL +L  K        
Sbjct: 190  GMIFRDVID------SFSKNPDYELPYEKIIFIGLNGHSKSEEKLLTYLHKKGIADFYWD 243

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
              S  +       S           +    L  +   +      V  I   +   +A  +
Sbjct: 244  YSSPLVRDPQNKASFFMDKNKV---QFPSQLSLQPEELSFDQPTVEAIGIPSSIGQAKYV 300

Query: 375  AIALRMSLDE-------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
               ++  L E           +AL+  D NL       + +    I+I+ G  L+ +  S
Sbjct: 301  HTIIKSLLAENQIVSSDQAMNTALVLPDENLLLPTLYSIPQEIDKINITMGYSLNNSSVS 360

Query: 428  SILTSLLNAIFK--------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
             ++  +                 +  +  ++ H        E+  +  ++ L+   +  +
Sbjct: 361  GLMEHIFELQKNVRRSENSAGFYYKPVLAILNHRYITNIAGEEAKNLRQSILQYNKIIVS 420

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                +I  L  L+   I    +                       +++   ++ L     
Sbjct: 421  VKELEIHPLFILIFKTIDNWYDAP---------------------EYLKNILSTLRKSLY 459

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
             +                      +       +   +  E  KT++ +   +       +
Sbjct: 460  TQKEKENE--------------DELISARSVDIEGEFIVEYYKTINKMNDALQNVS--FE 503

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             N   +  ++ +LI   +V    E  S L I+G LE+R L+FD LI+  +NEG++P   A
Sbjct: 504  MNIETYFKLLKKLIVNISVPFTGEPLSGLQIMGVLETRALDFDNLIILSMNEGIFPLKRA 563

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQ 717
             + F+   ++   +L T E      A+ F       + +      R   + +   SR+ +
Sbjct: 564  TSSFIPYNLRKGFDLPTYEHQDSIFAYHFYRLINRAKRIYLLYDTRTEGLQSGEVSRYFK 623

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            ++  L    F    K         T  L  +  +    + K    L+   +  S S I  
Sbjct: 624  QIKHLYADSFDIKEKLTVYKVSS-TESLPISISKTPEIQEKMNVFLQGGDKQLSASAINM 682

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-TPEINHLMK 836
             +N P   Y   +  +       +  + +  GT+FH+I+  L +    K  T ++ H ++
Sbjct: 683  YLNCPLQFYFSVVENMAEEDEVVETIEASMFGTIFHSIMEWLYEPFKGKMITADLLHKIR 742

Query: 837  QIIDSHFEKENLPPHIDIIWR----------------HLFHKISHSFLEHEEKIQSSIEK 880
            +  D     EN+       +                  +  K     L  +  +   I  
Sbjct: 743  K--DEKLLTENIERSFAENYFKTDKIKKLTGQNYLTGEVLRKYIKQVLVTDAGLTPFIY- 799

Query: 881  IFVNIPAKMA--IE-SIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP- 935
            +      KM   +     + L GF DR+D LK G   I DYKTG    + +  + L D  
Sbjct: 800  VDSEERIKMEYSLPSGKTVSLKGFIDRVDELK-GRTRIIDYKTGKGVLRYKEMKDLFDKD 858

Query: 936  ---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT------NDKKK 980
                     Q+ + +        ++I       ++Y+R     K +         ND   
Sbjct: 859  LKDRPKAVMQVFMYSHLYMRKYPNKIIE---PGIYYLRNLFDSKFEPGVINKSGRNDDHI 915

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
                   E+  +     +  + + E  F 
Sbjct: 916  TDFSMYREEFKEYFDMCLDEIFDPEVSFT 944


>gi|299067241|emb|CBJ38438.1| putative helicase, C_term RecB family exonuclease [Ralstonia
           solanacearum CMR15]
          Length = 966

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 152/962 (15%), Positives = 292/962 (30%), Gaps = 107/962 (11%)

Query: 10  TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEI 67
             AP   F      A           +D        +  + VPT   I  +R        
Sbjct: 5   AFAPGPAFLPHAADA-------AWRFFDAHATDAPGAGVVVVPTAAQIPGVRGALHASAQ 57

Query: 68  TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI--LIWRNKLPD 125
                 +LP I +LG      +  DL    +L    S + RLL + + +    W  +   
Sbjct: 58  AAGALRLLPRILTLG-----HWLLDLPPEADLPAARSTLSRLLAVQQALKTQAWLREALG 112

Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
              +        + ++ ++ +       D  D  ET+ +      AL       +  L+ 
Sbjct: 113 AQDEAALWGVAQVLVTVSDELSQRWLTLDAADS-ETDGRHDALETALSTALERTYAQLSE 171

Query: 186 DFL----KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
            FL    +I   +W    +   AS P+  ++  MR   + L     GP++    T    A
Sbjct: 172 RFLGTESRIVLTFWR---LLSGASDPIPVRLRAMRRLLDALR----GPVVWMSPTDPEGA 224

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
               ++  A       +                  ++    +     +TH  +    L  
Sbjct: 225 DLDFLTRAAGRVPVLRI--------------GYDWQAREPVAEAAAPATHGAFRTLLL-- 268

Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                                     +++  P                         + +
Sbjct: 269 ---------HAWPECGTVAPQAVEASTEAERP----------------------PPGLRI 297

Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
             A    +EA   A  L   L+  ++  AL+  DR +ARRV+  L R  + +    G  L
Sbjct: 298 ASAARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKL 357

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
           STT  ++ L   ++ +    D  A+  L+K P                  EL      +N
Sbjct: 358 STTRAAAALMRWIDVVQGDGDTAALLDLLKSPFCLRDAEAPSSVAPAWVAELERRVRRRN 417

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                     +   +A +  +T V                  +         L+  +   
Sbjct: 418 VSGGWG---RLRRLVAPRGTDTEVAEAADTGDGPPAGRLAERL--------GLLADEAAL 466

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
               G+ ++  W  L    L  + +    +  +   +          S      +  + +
Sbjct: 467 WRRAGHATLEAWVTLLAGTLDRLRMRAGLQNDDAGRQLLDWLDRLRVSVHGSADAGARFS 526

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
             EW  +++ L++          +   + IL    +R+  FD +++ G ++   P    +
Sbjct: 527 LQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPE 586

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQR 718
             F S  ++ +L L    +   Q A D   +      ++ T         P   S WL+R
Sbjct: 587 WLFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPNRLSGWLER 646

Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
           L           ++      L   +     T  P    P   P       T S +    L
Sbjct: 647 LQRRLAAA---GMRIDVPVVLPALQTARQPTDMPAPAAPVLVP------STLSAAAYNSL 697

Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLM 835
              PY  +  R+L+L  +     + ++ D G + H I+    ++ ++    +  +   L+
Sbjct: 698 RRCPYQFFVGRMLRLGELEEVSDELEKRDIGEVLHAILHRFHRQLLDTPMADPVDRFALL 757

Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAIESI 894
           + + D  F          + +   +  +  S+L  +   ++         + A+ +I   
Sbjct: 758 QTLTDERFAPLLAEDGHVLRFYRRWQGVMPSYLAWQAAREADGWRFEAGEVDAEASIALT 817

Query: 895 G---IHLTGFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLI-DPQLSLEAAALKAGSF 949
           G   +HL G  DRID      V + DYKT          +    D QL            
Sbjct: 818 GAPALHLRGRIDRIDTHPEHGVAVLDYKTQSPIALARKVKAPFEDCQLPFYGLLDARAGA 877

Query: 950 SQ 951
             
Sbjct: 878 GG 879


>gi|29829619|ref|NP_824253.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606727|dbj|BAC70788.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
            MA-4680]
          Length = 1129

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 137/1066 (12%), Positives = 261/1066 (24%), Gaps = 150/1066 (14%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE+             V +   +++A  ELR       G  +   P   +        
Sbjct: 66   TLVESVAARIARGGDPERVLVLTFSRKAAVELRDRMALRMG--AARAPQATTFHSFCYAL 123

Query: 89   FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A  D+ L       +S  ++ + +  L+    +        L          +     
Sbjct: 124  VRAHQDVGLFVEPLRLLSGPEQDVAVRGLLAGQPDLER---LGLAHVRWPDELRACLTTR 180

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++            L +         W+ A+ FL         + V   A  
Sbjct: 181  GFADEVRAVLARSRELGLSPGALRSFAARIGRPDWMAASAFLAEYLDVLDLQGVLDYAEL 240

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 +   R      +      + +     + PA ARL+  +A    G  ++   D   
Sbjct: 241  VHRAVLLARRPGVAERLAAHYDAVYVDEYQDTDPAQARLLHALAGS--GRTLVAFGDPDQ 298

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +                 +          ++ L   R     L   +  +  R   
Sbjct: 299  SIYTFRGADVNGILDFPDAFPRAD----GRPAPVEVLRTSRRSGAGLLAATRLLTQR--- 351

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
                 +P +              P      ++V          E  +IA  LR +  E  
Sbjct: 352  -----MPLNRLPAEKVRAHRELAPVRDGGHAEV--YTYPTPGTELDNIADVLRRAHLEDG 404

Query: 385  --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIF--- 438
                + + L+ A       V+  LT  G+ +DI     PL      + L + L A+    
Sbjct: 405  VPWGEMAVLVRAGSRTIPTVRRALTAAGVPLDIDGNDLPLRHEPAVTPLLTALKAVAEAE 464

Query: 439  ----------------------------------------KLNDFMAIATLVKHPLAKFG 458
                                                       D     TL+  PLA   
Sbjct: 465  ADASGTDASGTHAESSGPAGPAASPEPAGSAEPVEPARESSWLDTETALTLLASPLAGM- 523

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                 L R   AL         +     D    +L R   +               +   
Sbjct: 524  -DAADLRRLGRALREEERAAGNHVPPPSD---ELLARALAEPERLVAHDPAYARGAQRLG 579

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            + +      L            +                         D           
Sbjct: 580  VLLRKARERLAGGRARRRRALWELWDGTPWPQRLARAARRGGAAGRNADRDL-------- 631

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
             +        +   E  +  +       +I  + I  +T+  +  +   + ++    S+ 
Sbjct: 632  -DAVCALFATAARAEERTGGRGALNFLEEIDAQDIAADTLTRRAVRPDAVRLMTAHRSKG 690

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA----HDFEMANGT 694
            L +  +++ G+ EG+WP    +   L         L          A      +  A   
Sbjct: 691  LEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEERRLFYVAATRA 750

Query: 695  RH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
            R  LI T      +     SR+L  L V           +R         +L  TT  P 
Sbjct: 751  RERLIVTAVKAPADDGDQPSRFLTELGV--EPKDVTGRPRRPLSVAALVAELRATTVDPR 808

Query: 754  YK----------------------RPKPFPPLEAQPRT-------------------YSF 772
                                    RP        +                       S 
Sbjct: 809  VSDTLREAAARRLARLAALGDEDGRPLVPSAHPYRWWGMYEPTESKVPLRNRDQPVVLSG 868

Query: 773  SEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            S + QL N      +  R      +            G + H ++ + +         ++
Sbjct: 869  SALDQLANTCSLQWFLGR-----EVKADAPATAAQGFGNVVH-VLADEVASGHTPADLDV 922

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
                   + +    +                    FL+     ++    +       + +
Sbjct: 923  LMERLDSVWNALAFDAPWKSAQEKENARV--ALERFLQWHVMDRAGRTPVASEHDFDVTL 980

Query: 892  ESI--GIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGS 948
            E+    + + G  DR++    G   + D+KTG   P      +   PQL++   A+  G+
Sbjct: 981  EAGSYEVRIRGSMDRVEADGEGRAYVVDFKTGKQAPTAAEVGRH--PQLAVYQLAVSEGA 1038

Query: 949  FSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
              +       +      ++L+Q            K  A E  E   
Sbjct: 1039 VDEAFDGVRPEPGGAELVQLRQGAAKRDGGEALPKVQAQEPLEGEW 1084


>gi|313886767|ref|ZP_07820474.1| hypothetical protein HMPREF9294_1146 [Porphyromonas asaccharolytica
            PR426713P-I]
 gi|312923808|gb|EFR34610.1| hypothetical protein HMPREF9294_1146 [Porphyromonas asaccharolytica
            PR426713P-I]
          Length = 996

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 152/1081 (14%), Positives = 318/1081 (29%), Gaps = 171/1081 (15%)

Query: 27   NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86
            +  L +  R    N   L    + VPTKRA   L+ E +      +TILP I ++ + + 
Sbjct: 5    DNFLSQVVRRLRSNGTPLREQLLVVPTKRAGTFLQRELVAQLADAATILPRIVTIDEWIT 64

Query: 87   EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD---IIKDLYPESPLSLPISPA 143
            E     +L +  L         +  L  +   +  +  +       +   S     +   
Sbjct: 65   EMSGRVILDNTAL---------ISILYEVYAAYLAEQGEEKAATDQMLRLSQTERMLRDF 115

Query: 144  NAIWLAKN----LADIIDIIETEEKKWEDLHALKNEKYGMWW-------------LLAAD 186
              + LA      L   ++ ++  +  +  L   + E    +W                  
Sbjct: 116  QDMDLALANVEMLLGNLEELDAFD-DYSFLTEEECEAIRKFWTTLPKDFFKKPQGEEYLH 174

Query: 187  F---LKIASKYWTERLVELNASSPVGYQIALMRA---------EAEHLMKGTKGPIIIAG 234
            F    +   K +  RL EL  +        +            E           +   G
Sbjct: 175  FSVVWREIYKRFNARLTELGVAYRAAAYRLVAERDFTDDDLLKELRRHSGSKISLVSFIG 234

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
                 PA  +++  +      AI +           W  ++  +T+  +       H   
Sbjct: 235  LYNLTPAEQKIIKKLQIASAEAINV--------QLYWQKVSLDATDEFT------DHLYR 280

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            ++ + ++ L  +  D       S +++  S+  +        S +      + K P    
Sbjct: 281  TIEQNVELLGGEIIDGGVARVYSPKIHLLSLNSTILQPQVVNSLIDKIIEHDPKAP---- 336

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
                           E + IAI L         +  LI   ++L +     L       +
Sbjct: 337  ---------------EELRIAIVL-------NDEKTLIPLMKSLKQPTCTSL-------N 367

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
            ++ G PL  T  ++ +   LN              +  PL      E    +   +   +
Sbjct: 368  VTMGYPLQYTSVATWIRRYLNIFG-----------LVSPL----DRELARVKLTCSRLQL 412

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
             L          +L + ++D+IA           +  + E        +   +L+ +TP 
Sbjct: 413  WLAAPLTRKLFGELTTTLMDQIALHHYAITASELRKIIEELTNGADEAVRQLLLEILTPS 472

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-- 592
             T K           +    +L          +E         +             +  
Sbjct: 473  FTGKELLGR------VGQLLELLKGTSSVPEEEEDEPADEPIDQVILSEALDQIILYVTQ 526

Query: 593  --------ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
                    E+   +         ++ +L+   ++  +      L ++G LE+R L FD +
Sbjct: 527  VSNLLQPNESDRHLLDTPSHVAYLLEQLLAVGSIPFEGAPLEGLQVMGFLETRTLTFDYV 586

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSL 703
            I+  + EG  PK++     +  +++   ++ T        A+ F     G + +   +  
Sbjct: 587  IMLNVQEGDLPKSSHTTTLIPDLLRRAAHMTTYRTEDDTNAYHFYRLIQGAKEVYLLQDT 646

Query: 704  RENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
            R  +      SR++ ++  L      ++              +   T Q    R      
Sbjct: 647  RPKSISSMEPSRYVDQIRYLTNLQLQESAY--ADPLEARDETVSQITGQDEEVRDYLEQL 704

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
               +  T+S S++      PY  Y ++I  +           + + G++ H  + +  K 
Sbjct: 705  TSGER-TFSPSDLITYYKCPYQFYLKKIKGVGEPRPEPGVVTQIELGSIVHEYLEQFYKG 763

Query: 823  RINKNTPEI----------NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
             + K    I             +  I       ++ P     I      +     LE + 
Sbjct: 764  LVQKAGDVITRDQLEHKVSRQTLTDIYKEIVSDKSAPDD---ILLTDLERYISKALEIDR 820

Query: 873  KIQSS---IEKIFVNIPAK---MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
             +  S   ++ +      K       +  I++TG  DR+D +  G   I DYKTG   + 
Sbjct: 821  LLLGSSGTLQLLASETKIKNVPFQWGTHTIYMTGQPDRVDKVSGGVCRIVDYKTGSIKQP 880

Query: 927  ETAQK-------------------LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
            +  +K                       Q  L A          I+  +     Y     
Sbjct: 881  KKLKKLSFDTLTSWRFQKNNYKLGGYMLQSYLYALLYAQQPEVGIEELQPT--LYSLAPA 938

Query: 968  KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHL 1027
                +      +    + + E   K L  +V    + E+ F       +    + +Y  +
Sbjct: 939  VPASEGAIYLDEPKDLNAIKEIVFKYLDLLV----DPEKKFF--QTPVQDICKECDYKTI 992

Query: 1028 A 1028
             
Sbjct: 993  C 993


>gi|52842482|ref|YP_096281.1| endonuclease [Legionella pneumophila subsp. pneumophila str.
            Philadelphia 1]
 gi|52629593|gb|AAU28334.1| RecB family exonuclease, hypothetical [Legionella pneumophila subsp.
            pneumophila str. Philadelphia 1]
          Length = 858

 Score =  215 bits (548), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 101/704 (14%), Positives = 219/704 (31%), Gaps = 106/704 (15%)

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR---FGINIDIS 416
             +  A +++ E   +   L   + + KK+  ++  +      V   + R        +IS
Sbjct: 224  EVFSAKDKKTEYQELMTWLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFEPNLFNIS 283

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
             G PLS     S     L+    L +    A L++ P       E               
Sbjct: 284  LGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFLQRS---------- 333

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                                    +           S   K     +  H  +    L  
Sbjct: 334  ------------------------DYLQESKLLQDQSFPTKLFIEDIAHHTPKLAELLKN 369

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                   T    ++ +W +L    L  +       L +  ++   +           +  
Sbjct: 370  MNFYPEKT----TLDEWIELFQERLNGIGFPGDYVLNSEDYQCFNRFTMIFDEFRQLSLI 425

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                   E  + + +LID    +P+   S  + ILG LE+    FD+L + GL +   P+
Sbjct: 426  SSHLTKKEAFEALKQLIDNTIFQPQKSNSP-IQILGLLEASGCEFDSLWVMGLTDRCLPQ 484

Query: 657  NTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIAS 713
             T  +PF+   +Q +L +      + +  A    +     +   +++    +++ P +  
Sbjct: 485  QTRLSPFIPFELQRELGMPHSIPARELQYAKQILQRLQRGSVETVFSYPQFDDDTPNLPC 544

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
              +            +    +                    +     P    +  +   S
Sbjct: 545  SLITHYPAYLSRPADNKTNVQS--------------CLVPLEENYEVPVKPDESISGGTS 590

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------ 827
             +      P+   A+  LK + +       D  ++G L H I+  L ++  N+       
Sbjct: 591  LLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEHLIKLK 650

Query: 828  TPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
              E+   + Q I            +  P  +  +      +I  S+LE E++     +  
Sbjct: 651  PAELERFIDQAIQGALNPIRQQHSQTFPDLVANVEYMRLKRIILSYLEWEKQR-PPFKIT 709

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNPKKETAQKLIDPQLS 938
             +     + +  +   +    DR+D + +    + DYK+   G  P     ++ ++PQL 
Sbjct: 710  GLEENHSINLAGLDFKV--RVDRLDEVGNKQW-VIDYKSTLPGGKP--WNEERPMEPQLL 764

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKYSADELS 987
            L A   +          ++  L  I+LK              +   I   K+  + ++  
Sbjct: 765  LYALLNE----------QINTLLLIQLKTGKIKLSGFSEEKWETKEINTLKEDENWEDYR 814

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSE-KSNIQSEYDHLARV 1030
            ++ L+ L  +   +++G  P     R        + ++ +L R 
Sbjct: 815  QRWLEQLTHLAEEIKSGYCP----PRPQNLTICQRCDFQNLCRF 854


>gi|239929060|ref|ZP_04686013.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 1114

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 129/1085 (11%), Positives = 264/1085 (24%), Gaps = 159/1085 (14%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE+             V +   ++RA  ELR       G  +   P   +        
Sbjct: 22   TLVESVAARIARGGDPERVLVLTFSRRAAVELRDRMALRMG--AARAPRATTFHSFCYAL 79

Query: 89   FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A  D  L       +S  ++ + +  L+    +        L          +     
Sbjct: 80   IRAHQDSDLFVEPLRLLSGPEQDVTVRELLAGQADLER---LGLAHVRWPDELRACLTTR 136

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++          E L+A         W  A+ FL         + V   A  
Sbjct: 137  GFADEVRAVLARSRELGLDPEALNAFARRIGRPDWRAASAFLAEYLDVLDLQGVLDYAEL 196

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 +   R E    +      + +     + PA  RL+  +A    G  ++   D   
Sbjct: 197  VHRAVLLARRPETARQLTARYDAVYVDEYQDTDPAQVRLLHALAG--GGRTLVAFGDPDQ 254

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +                 +          +  L   R     L   +  +  R  +
Sbjct: 255  SIYAFRGADVNGILEFPYAFRRAD----GRPAPVGVLRTSRRSGAALLAATRLVTQRMPL 310

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
                        +    +  ++     +    V +        E  +IA  LR +  E  
Sbjct: 311  PR----------LPAEKVRAHRELTAAREGGRVEVYTYPTPGTELDNIADILRRAHLEDG 360

Query: 385  --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTS--------- 432
               +  + L+ A       V+  LT  G+ +D+     PL      + L +         
Sbjct: 361  LPWRDMAVLVRAGSRTLPAVRRALTSAGVPVDVDGDDLPLRHEPAVAPLLTALRAVATAA 420

Query: 433  -------------LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
                                     A A   +             +  +      A    
Sbjct: 421  AEGRGRGAGTVPGAARTAADEATGEAAADEDRPGPGAEEDRPGAAAAEERPGPGAAEDRP 480

Query: 480  KNSY-------------------------DIMDLKSLVLDRIATQKNNTHVPHW------ 508
                                         D  DL+ L       ++   +          
Sbjct: 481  GAGPGEGPEPCWLDTETARTLLTSPLAGMDAADLRRLGRALREEERAAGNPLPPPSDELL 540

Query: 509  ---------QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                      +         A  L   + +    L    T + +       + W +    
Sbjct: 541  ARALAEPERLTVHDPAYARGAQRLGALLRKARERLAGGGTAEEALWDLWDGTPWPQRLER 600

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
              +           +L         ++      E  +  +       +I    I  +T+ 
Sbjct: 601  AARRGGAAGRNADRDLDAVCALFATAA----RAEERTGGRGALNFLEEIEAEDIAADTLT 656

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
             +  +   + ++    S+ L +  +++ G+ EG+WP    +   L         L     
Sbjct: 657  RRAVRPDAVRLMTAHRSKGLEWSLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLT 716

Query: 680  YIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
                 A                L+ T      +     SR+L  L V           +R
Sbjct: 717  PGALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGV--EPRDVTGRPRR 774

Query: 735  GQCYLDWTRKLDYTTKQPHYK----------------------RPKPFPPLEAQPRT--- 769
                     +L  TT  P                         RP        +      
Sbjct: 775  PLSVAALVAELRATTVDPRASDALRRAAAHRLARLAALADDDGRPLVPAAHPYRWWGMFE 834

Query: 770  ----------------YSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                             S S ++QL +      +  R      +            G + 
Sbjct: 835  PTESRVPLRNRDQPVVLSGSALEQLAHTCALQWFLGR-----EVKADAPATAAQGFGNVV 889

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H +  E+       +   +   +   + +    +                    FL+   
Sbjct: 890  HALADEVASGHTPADLDVLMERL-DSVWNALAFDAPWKSAQEKENARV--ALERFLKWHV 946

Query: 873  KIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETA 929
              ++    +       + +E+    + + G  DR++    G   + D+KTG   P     
Sbjct: 947  MDRAGRTPVAGEHDFDVTLEAGDYQVRIRGQMDRVETDGDGRAYVVDFKTGKQAPSSAEV 1006

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
             +   PQL++   A++ G+  ++      +      ++L+Q   +        K  A + 
Sbjct: 1007 ARH--PQLAVYQLAVREGAVDEVFGGTRPEPGGAELVQLRQGAAVRDGGETLPKVQAQQP 1064

Query: 987  SEKSL 991
             E   
Sbjct: 1065 LEGEW 1069


>gi|197302902|ref|ZP_03167953.1| hypothetical protein RUMLAC_01630 [Ruminococcus lactaris ATCC 29176]
 gi|197297983|gb|EDY32532.1| hypothetical protein RUMLAC_01630 [Ruminococcus lactaris ATCC 29176]
          Length = 1125

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 140/1071 (13%), Positives = 286/1071 (26%), Gaps = 150/1071 (14%)

Query: 48   TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
             + VP +  +Q  R                I +L   +   +     +     P + +  
Sbjct: 35   LVLVPEQFTMQTQRDLCAAHPRGGIM---NIDAL-SFMRLAYRVFEEVGREEQPVLDDEG 90

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
            + L + R+     + L  +  +L  +  +S              +  +I         ++
Sbjct: 91   KNLVIRRIAGKLEDDLKVLKGNLKKQGYIS-------------EVKSVISEFVQYGVDFD 137

Query: 168  DLHALKNEKYGM-WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
             L           +       ++   + + E L +   +      + ++           
Sbjct: 138  KLDDFMEGLSQESYLYYKLQDIRKVYEGFEEYLRDRYIT--KEEMLDVLARAVCDSELLK 195

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
               I + G TG  P   RL+S +       IV   +D      I+               
Sbjct: 196  GSVIALDGFTGFTPVQIRLISELLKVSEKVIVTVEIDRREDPFIYRH--------PYQLF 247

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
              S     SL K       + E+   L         R     +           +    +
Sbjct: 248  ALSKQMVTSLVKTAQDAGAEVEESVCLYEKVPY---RFRENPEMAFLESELFRYSRRQYK 304

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVK 403
             K    + C   ++L E  N REEA  +A ++R  + E     +  A+I AD NL     
Sbjct: 305  KKKEESETCSGAISLHETKNPREEARYVAESIRKLVREKDYRYRDIAVIAADLNLYADAL 364

Query: 404  L-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                  F I + +     +        L SLL    +   + ++   ++  L  F   E 
Sbjct: 365  EKACELFEIPVFMDHKKSILLNSFVEYLRSLLAMAEQNFTYESVFRHLRTGLCGFTDEEI 424

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                       +               + V    +T +      +    +  E     + 
Sbjct: 425  DRLENYCLALDIKGYKKWQQ-------AWVRRTPSTGEKELEELNHLRVIFVEKTMGLIQ 477

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            ++    + +  +               + +  +  +T L+    D         + +  +
Sbjct: 478  VLKQKKKTVRDVT-------QAVYEYLVQEKLQQKITQLEKKFQDRGELALAKEYAQVYR 530

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             +  LF K +      +    ++ +++   ++   V         + I     +R+ N  
Sbjct: 531  IVMELFDKFVSLLGEEEIALKDYCELLDAGLEEAKVGVIPPSLDQVMIGDVERTRIKNIK 590

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTRH 696
             L   G N+ + P NT     LS   +             A++ I        +      
Sbjct: 591  ALFFVGANDTLLPGNTGVGGLLSECDREQFQKKEISLSPGAKEKIYIQKFYLYLNLTKPT 650

Query: 697  --LIYTRSLRENNIPT-IASRWLQRLLVLGGT---------DFFDNLKKRGQCYLDWTRK 744
              L  + +       +   S  +Q L+ L             +      R    L     
Sbjct: 651  KFLFLSWAKASGEGKSLRPSYLIQELMRLFPDLKPVDEEEKSWQQCEMTRRTGILRLAEG 710

Query: 745  LDYTTKQPHYKRPKPFPPLEA----------------------------------QPRTY 770
            L    +    +  + +                                        P   
Sbjct: 711  LREKEQGLDAQWKELYTWFAGDEKSRSVVEKLLRAGFYKKEAGMLGSQMAEKLYLDPERV 770

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S + +++  +  YA +    L+L          +  D G + H  +    +K   +    
Sbjct: 771  SVTRLEKFASCAYAHFLSYGLRLSDRET--YGFEAMDLGNIAHQALERFARKAEEEKLDW 828

Query: 831  ---INHLMKQIIDSHFEKENLP--------PHIDIIWRHLFHKISHS--FLEHEEKIQSS 877
                     ++ID   E   L            +    +   ++     +    +  Q  
Sbjct: 829  VTMPEERRTELIDESVESSVLDYGNTVLFSSARNEYMIYRIKRLIRRSVWALTRQMEQGD 888

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD---ITDYKTGD-NPKKETAQKLI 933
             +                   +G  DRID  +        +TDYKTG       +    +
Sbjct: 889  FKPAGYEFKFG----------SGKIDRIDTCEDENRVYVKVTDYKTGRKVFDITSFYHGL 938

Query: 934  DPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQKFKIDCITNDKKKYSA-------- 983
              QL +   A       +   ++   A +FY R++        T++K + S         
Sbjct: 939  QLQLPVYLNAALEAEGKRYPGKEIVPAGIFYYRIQDPIVAREKTDEKTEESILKELKLDG 998

Query: 984  -----DELSEKSLKNLIEIVTLL-----QNGEQPFISHLRLSEKSNIQSEY 1024
                 +E+ E    NL            QNG     S     EK      Y
Sbjct: 999  LVNGEEEVIEHLEANLTGSSLYYPLRRNQNGLLGSASKALPQEKFETVLAY 1049


>gi|323701382|ref|ZP_08113056.1| ATP-dependent nuclease subunit B [Desulfotomaculum nigrificans DSM
            574]
 gi|323533641|gb|EGB23506.1| ATP-dependent nuclease subunit B [Desulfotomaculum nigrificans DSM
            574]
          Length = 1161

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 124/1026 (12%), Positives = 258/1026 (25%), Gaps = 137/1026 (13%)

Query: 59   ELRSEFIEITGKKSTIL--PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
            E+R E          IL  P   +     E        L   L   V + +RL    R++
Sbjct: 21   EIRQELRRSQEGAPIILLVPEQATFQ--YEYMLAGTPGLKGILRAQVLSFRRLA--YRVL 76

Query: 117  LIWRNKLPDIIKDLYPESPLSLPIS-----------PANAIWLAKNLADIIDIIETEEKK 165
                      I +L     L   +             A     A +LA  +  ++     
Sbjct: 77   QEVGGAARAHIGELGKRMVLRRLLEQRKSELKIFHRAAKQPGFADSLAGTLAELKLYRIS 136

Query: 166  WEDL----HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
              DL      L   +     L   + L +      E L     + P  Y   L       
Sbjct: 137  PADLQRGQAELLKNRQDSALLDKLNDLILLYSDLEEFLAGR-FTDPDDYLNLLAERLHNS 195

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                    I I G TG  P    ++  +    N   V    D  +     +        +
Sbjct: 196  -PSVKGAEIYIDGFTGFTPQEYGVIEKLLITANRINVALCFDPALANGSCSETDVFYPTV 254

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
             +          + L ++   L +  E    L    +                + +    
Sbjct: 255  ETY---------HHLREMASSLRVAIEPATFLSMPESADRVPPRFAH------NPAVAHL 299

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSALITADRN 397
                  +   + +    + L+   N R E  + A  +    R      +    ++    N
Sbjct: 300  ERNYFQRPGEVCQQADGIKLVACANRRAEVEAAAREIIGLCRDHGLRWRDIVVMLRDLDN 359

Query: 398  LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             +  +       GI + I     +       ++ S L  + +   +  +   +K  L   
Sbjct: 360  YSHLISTVFQDHGIPVFIDQKRSVLHHPLVDLMRSALEVVIQQWAYDPVFRYLKTDLVPV 419

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKS-LVLDRIATQKNNTHVPHWQSRLSEED 516
               +            +      +  D    K   +       +  T   +  +++  + 
Sbjct: 420  LRDDVDKLENYVLAHGIRGSRWTDGRDWTYRKHYTLEQEDRLYQQETGELNAINQVRYQA 479

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                    D + +    +    T       +L +    +      +       R +    
Sbjct: 480  VSHLKSFADSVARA-QNVRDITTALFELLASLDVPGRLERWAREAEE----RSRLIEARE 534

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
              +    +  L  +I+E     K    E+  ++   ++   +         + +     S
Sbjct: 535  HAQLWNNVLMLLDEIVEALGDEKLTLEEYAQVLEAGLESLRLGIIPPGLDQVVVGTLERS 594

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFE 689
            R  N    ++ G+++GV P    ++   S   +         L      K   +    + 
Sbjct: 595  RNPNVKAALVLGISDGVLPARPGEDGLFSDFERELLKQQGITLAPGARRKLFDEQYLIYV 654

Query: 690  MANGTRH-LIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---------- 737
                    L  +    ++     + S+ + R+  L        ++               
Sbjct: 655  ALTRASDFLWLSYPQADDEGKALVTSQVIARVKELLPNLREQVIQVEPPDPGREIDFIAS 714

Query: 738  -------YLDWTRKLDYTTKQPHYKRP----------------------------KPFPP 762
                        R++          +                              P P 
Sbjct: 715  RDRSLSYLAAMLREVKAGRPVDPMWQDVYTWFARQPELRGQCRRVLAGLEHVNQEAPLPS 774

Query: 763  LEAQPR-----TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
               +         S S +++  + P+A +    L+L     F       D G  FH  + 
Sbjct: 775  GIGRKLYGSKLRASVSRLEKFTSCPFAHFLSHGLRLQERDTF--KLAAPDLGQFFHAALK 832

Query: 818  ELIKKRINKNTPEI----------NHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKISHS 866
                +   +                  +   +    + E L       +  +   +I   
Sbjct: 833  LFTHRLQEQGRDWAALTRTEAVTMAGEIVNELAPRLQNEILLSSARHRYLINKLRRIVER 892

Query: 867  FL--EHEEKIQSSIEKIFVNIPAKMAIESIGIH----------LTGFADRIDLLKSGF-- 912
             +    E   + S   + + I   +  E   +           L G  DRID    G   
Sbjct: 893  AVLTLTEHARRGSFRPVALEIGFGVPGELPPVTFDLAGGGSMELVGRIDRIDAACEGGQQ 952

Query: 913  -VDITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKF 969
             ++I DYK+G+   K       +  QL      AL+            A + Y  +K   
Sbjct: 953  YLNIIDYKSGETELKLADIYHGLRLQLLTYLDVALRYAHQLVKQPALPAGMLYFTVKDPL 1012

Query: 970  KIDCIT 975
                  
Sbjct: 1013 VSSSGP 1018


>gi|54295115|ref|YP_127530.1| hypothetical protein lpl2195 [Legionella pneumophila str. Lens]
 gi|53754947|emb|CAH16435.1| hypothetical protein lpl2195 [Legionella pneumophila str. Lens]
          Length = 858

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 220/704 (31%), Gaps = 106/704 (15%)

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR---FGINIDIS 416
             +  A +++ E   +   L   + + KK+  ++  +      V   + R        +IS
Sbjct: 224  EVFSAKDKKTEYQELMTWLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFEPNLFNIS 283

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
             G PLS     S     L+    L +    A L++ P       E               
Sbjct: 284  LGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFLQRS---------- 333

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                                    +           S   K     +  H  +    L  
Sbjct: 334  ------------------------DYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKN 369

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                   T    ++ +W +L    L  +       L +  ++   +           +  
Sbjct: 370  MNFYPEKT----TLDEWIELFQERLNGIGFPGDYVLNSEDYQCFNRFTMIFDEFRQLSLI 425

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                   E  + + +LID    +P+   S  + ILG LE+    FD+L + GL++   P+
Sbjct: 426  SSYLTKKEAFEALKQLIDNTIFQPQKSNSP-IQILGLLEASGCEFDSLWVMGLSDRCLPQ 484

Query: 657  NTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIAS 713
             T  +PF+   +Q +L +      + +  A    +     +   +++    E++ P +  
Sbjct: 485  QTRLSPFIPFELQRELGMPHSIPARELQYAKQILQRLQRGSVETVFSYPQFEDDTPNLPC 544

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
              +            +    +                    +     P    +  +   S
Sbjct: 545  SLITHYPAYLSRPADNKTNVQS--------------CLVPLEENYEVPVKPDESISGGTS 590

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------ 827
             +      P+   A+  LK + +       D  ++G L H I+  L ++  N+       
Sbjct: 591  LLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEQLIKLK 650

Query: 828  TPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
              E+   + Q I            +  P  +  +      +I  S+LE E++     +  
Sbjct: 651  PAELEQFIDQAIQDALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQR-PPFKIT 709

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNPKKETAQKLIDPQLS 938
             +     + +  +   +    DR+D + +    + DYK+   G  P     ++ ++PQL 
Sbjct: 710  GLEENHSINLAGLDFKV--RVDRLDEVGNKQW-VIDYKSTLPGGKP--WNEERPMEPQLL 764

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKYSADELS 987
            L A   +          ++  L  I+LK              +   I   K+  + ++  
Sbjct: 765  LYALLNE----------QINTLLLIQLKTGKIKLSGFSEEKWETKEINTLKEDENWEDYR 814

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSE-KSNIQSEYDHLARV 1030
            ++ L+ L  +   +++G  P     R        + ++ +L R 
Sbjct: 815  QRWLEQLTHLAEEIKSGYCP----PRPQNLTICQRCDFKNLCRF 854


>gi|91205399|ref|YP_537754.1| endonuclease [Rickettsia bellii RML369-C]
 gi|122425724|sp|Q1RIZ9|Y584_RICBR RecName: Full=Uncharacterized protein RBE_0584
 gi|91068943|gb|ABE04665.1| RecB family exonuclease [Rickettsia bellii RML369-C]
          Length = 832

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 100/470 (21%), Positives = 186/470 (39%), Gaps = 28/470 (5%)

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
            P++W +E G  LS   + + E    I  +  ++  I   L+    VK      S + I  
Sbjct: 374  PDIWEKEGGAELSEFLNNLTEFSGSINVSKKDFPKIFALLLSN--VKYYKNIESKIIIGS 431

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              E  L  FD +IL   N   W   T  +P+LS+  +  LN+   E      ++ F++  
Sbjct: 432  PEELALSRFDLVILPHFNSDNWSNTTTTHPYLSKEAKQILNIDYDEITPKLYSNYFDLLL 491

Query: 693  GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
                +I   + +     +       +L          ++  +  C +     LD TT   
Sbjct: 492  QNEEVIILNAKKYAGKLSTPCNLFLKLSN-KNVIPNKSVIPQLDCGISGVIFLDSTTSTQ 550

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                          P   S ++I+ LI +PY  YA++ILKL       ++P  +D G   
Sbjct: 551  DDIEQAAH--STFFPNILSVTDIETLIRNPYGFYAKKILKLRTQDKIWEEPKISDFGNFI 608

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H ++ E  K    +N  +    +  I ++      LP +    W+     +S +F+  + 
Sbjct: 609  HKVLEEYSKNYDQQNMLDQQQALLNIGNNILHSTILPTYTKKTWQTKLTLLSKAFILFDM 668

Query: 873  KIQSSIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
            + + + +KI+  I  +  + I    I + G ADRI++ KS  + I DYKTG  P K+  +
Sbjct: 669  ERRKNCQKIYFEIKGELNLNIAGQNIKIIGIADRIEISKSNCITILDYKTGTIPTKKEIE 728

Query: 931  KLIDPQLSLEAAALKAGSF-------------SQIDCRKVANLFYIRLKQKFKIDCITND 977
              + PQL +E+  +    F                +  +   + Y+++      +     
Sbjct: 729  LGLSPQLIIESLMILENGFNISHSYAPLCHSCESGNPIENITIAYVKITS---TEPYVQT 785

Query: 978  KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHL 1027
             +   + E  EK  + LI ++       + F+  L +S+     ++Y HL
Sbjct: 786  TEISLSMETLEKHKQGLIRLLEYYVK-NKSFVYDLDMSK----YNDYLHL 830



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 76/219 (34%), Gaps = 43/219 (19%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F ++    +++    EN R           + I +P   +  +L+    +    ++  LP
Sbjct: 7   FLQDFAEFIVSKFGKENLRK---------ELKIILPNSLSCTKLKGLLTDNYNVQN--LP 55

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
           II     ++ +K +++          +S ++ L  L+++I  ++                
Sbjct: 56  IIIPFNAIISKKDSSEDY--------MSKMEELFTLSKIITEYKK--------------- 92

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
            L  +P  A+  A  L  +   +         +  ++      +W     FL+ +   W 
Sbjct: 93  -LDFTPEEALKAAGILNKLFADLVNNNVD---IKLIETYNNSEYWQNIYKFLEYSFLKWQ 148

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
           +   + + +  +   +  +        K +   +I+AG 
Sbjct: 149 KNEKQSSNNYKLKLLLEEIAR-----TKNSCKQVILAGI 182


>gi|291437397|ref|ZP_06576787.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340292|gb|EFE67248.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 1126

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 129/1085 (11%), Positives = 264/1085 (24%), Gaps = 159/1085 (14%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE+             V +   ++RA  ELR       G  +   P   +        
Sbjct: 34   TLVESVAARIARGGDPERVLVLTFSRRAAVELRDRMALRMG--AARAPRATTFHSFCYAL 91

Query: 89   FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A  D  L       +S  ++ + +  L+    +        L          +     
Sbjct: 92   IRAHQDSDLFVEPLRLLSGPEQDVTVRELLAGQADLER---LGLAHVRWPDELRACLTTR 148

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++          E L+A         W  A+ FL         + V   A  
Sbjct: 149  GFADEVRAVLARSRELGLDPEALNAFARRIGRPDWRAASAFLAEYLDVLDLQGVLDYAEL 208

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 +   R E    +      + +     + PA  RL+  +A    G  ++   D   
Sbjct: 209  VHRAVLLARRPETARQLTARYDAVYVDEYQDTDPAQVRLLHALAG--GGRTLVAFGDPDQ 266

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +                 +          +  L   R     L   +  +  R  +
Sbjct: 267  SIYAFRGADVNGILEFPYAFRRAD----GRPAPVGVLRTSRRSGAALLAATRLVTQRMPL 322

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
                        +    +  ++     +    V +        E  +IA  LR +  E  
Sbjct: 323  PR----------LPAEKVRAHRELTAAREGGRVEVYTYPTPGTELDNIADILRRAHLEDG 372

Query: 385  --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTS--------- 432
               +  + L+ A       V+  LT  G+ +D+     PL      + L +         
Sbjct: 373  LPWRDMAVLVRAGSRTLPAVRRALTSAGVPVDVDGDDLPLRHEPAVAPLLTALRAVATAA 432

Query: 433  -------------LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
                                     A A   +             +  +      A    
Sbjct: 433  AEGRGRGAGTVPGAARTAADEATGEAAADEDRPGPGAEEDRPGAAAAEERPGPGAAEDRP 492

Query: 480  KNSY-------------------------DIMDLKSLVLDRIATQKNNTHVPHW------ 508
                                         D  DL+ L       ++   +          
Sbjct: 493  GAGPGEGPEPCWLDTETARTLLTSPLAGMDAADLRRLGRALREEERAAGNPLPPPSDELL 552

Query: 509  ---------QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                      +         A  L   + +    L    T + +       + W +    
Sbjct: 553  ARALAEPERLTVHDPAYARGAQRLGALLRKARERLAGGGTAEEALWDLWDGTPWPQRLER 612

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
              +           +L         ++      E  +  +       +I    I  +T+ 
Sbjct: 613  AARRGGAAGRNADRDLDAVCALFATAA----RAEERTGGRGALNFLEEIEAEDIAADTLT 668

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
             +  +   + ++    S+ L +  +++ G+ EG+WP    +   L         L     
Sbjct: 669  RRAVRPDAVRLMTAHRSKGLEWSLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLT 728

Query: 680  YIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
                 A                L+ T      +     SR+L  L V           +R
Sbjct: 729  PGALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGV--EPRDVTGRPRR 786

Query: 735  GQCYLDWTRKLDYTTKQPHYK----------------------RPKPFPPLEAQPRT--- 769
                     +L  TT  P                         RP        +      
Sbjct: 787  PLSVAALVAELRATTVDPRASDALRRAAAHRLARLAALADDDGRPLVPAAHPYRWWGMFE 846

Query: 770  ----------------YSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                             S S ++QL +      +  R      +            G + 
Sbjct: 847  PTESRVPLRNRDQPVVLSGSALEQLAHTCALQWFLGR-----EVKADAPATAAQGFGNVV 901

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H +  E+       +   +   +   + +    +                    FL+   
Sbjct: 902  HALADEVASGHTPADLDVLMERL-DSVWNALAFDAPWKSAQEKENARV--ALERFLKWHV 958

Query: 873  KIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETA 929
              ++    +       + +E+    + + G  DR++    G   + D+KTG   P     
Sbjct: 959  MDRAGRTPVAGEHDFDVTLEAGDYQVRIRGQMDRVETDGDGRAYVVDFKTGKQAPSSAEV 1018

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
             +   PQL++   A++ G+  ++      +      ++L+Q   +        K  A + 
Sbjct: 1019 ARH--PQLAVYQLAVREGAVDEVFGGTRPEPGGAELVQLRQGAAVRDGGETLPKVQAQQP 1076

Query: 987  SEKSL 991
             E   
Sbjct: 1077 LEGEW 1081


>gi|256785339|ref|ZP_05523770.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 1121

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 130/1103 (11%), Positives = 275/1103 (24%), Gaps = 162/1103 (14%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +     ++ ++ +            +P     + +   +++A  ELR       G  +
Sbjct: 15   PGTGKTTTLVESVADRI------ARGGDPE---RILVLTFSRKAAVELRDRMALRIG--A 63

Query: 73   TILPIIKSLGDVVEEKFTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
               P   +          A  D  L       +S  ++ + +  L+    +        L
Sbjct: 64   ARAPRATTFHSFGYALVRAHQDSDLFVEPLRLLSGPEQDVTVRELLAGQVDLER---LGL 120

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                      +       A  +  ++          + L A         W  AA FL  
Sbjct: 121  AHVRWPDELRACLTTRGFADEVRAVLARSRELGLGPDALAAFARRIGRPDWRAAAVFLAE 180

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                   + V   A       +   R E    +      + +     + PA  RL+  +A
Sbjct: 181  YLDVLDLQGVLDYAELVHRAVLLARRPEVAAHLTAQYDAVYVDEYQDTDPAQVRLLHALA 240

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
            +   G  ++   D       +            +    +          +  L   R   
Sbjct: 241  D--GGRTLVAFGDPDQSIYAFRGADVNGILDFPTAFPRAD----GRPAPVGVLRTARRSG 294

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
              L   +  +  R             + +    +  ++     +    V          E
Sbjct: 295  SGLLAATRLLTQR----------MPLTRLPADKVRAHRELTPVRGGGRVEAYTYPTAGTE 344

Query: 371  AISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTL 425
              +IA  LR +  E     +  + L+ A       ++  LT  G+ +DI     PL    
Sbjct: 345  LDNIADILRRAHLEDGVPWRDMAVLVRAGSRTIPTLRRALTSAGVPLDIDGDDLPLRHEP 404

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAK----------------------------- 456
              + L + L A+ +        T  +                                  
Sbjct: 405  AVAPLLTALRAVAEAEADTGARTGERPGAVGSEADADPRADADAGGDPEIDPDADPDIDP 464

Query: 457  -----FGFPEKYLSRAKNALELVALRGNKNSY------------DIMDLKSLVLDRIATQ 499
                     E   +  K +    A R ++  +             +  + +  L R+   
Sbjct: 465  DADADAYVDEGGDAATKPSRGEHAYRADEPCWLSTETALTLLTSPLAGMDAADLRRLGRA 524

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVD--------------------HILQCITPLVTYKT 539
              +             D+ LA  L +                     + +    L    +
Sbjct: 525  LRDERRAAGNPLPPPSDELLAQALAEPERLAVHDPAYARGAQRLGALLRKARERLAGGGS 584

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
             + +       + W        +           +L         ++      E  +  +
Sbjct: 585  AEEALWDLWDGTPWPTRLERSARRGGAAGRNADRDLDAVCALFATAA----RAEERTGGR 640

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                   +I    I  +T+  +  +   + ++    S+ L +  +++ G+ EG+WP    
Sbjct: 641  GALNFLEEIDAEDIAADTLARRAVRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRR 700

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAA----HDFEMANGTRH-LIYTRSLRENNIPTIASR 714
            +   L         L          A      +  A   R  L+ T      +     SR
Sbjct: 701  RGSLLEADRIGRDGLAEPLSPGALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSR 760

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK---------------- 758
            +L  L V           +R         +L  TT  P    P                 
Sbjct: 761  FLTELGV--EPADVTGRPRRPLAVAALVAELRATTVDPRVSEPLREAAARRLARLAALTD 818

Query: 759  -------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL--------------DFIP 797
                   P          +  +E K  + D           L                + 
Sbjct: 819  EDGRPLVPSAHPYRWWGMWDPTESKVPLRDRDQPVTLSGSALDQLANTCALQWFLGREVK 878

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                       G + H +  E+       +   +   +   + +    +           
Sbjct: 879  ADAPATTAQGFGNVVHVLADEVASGHTPADLAVLMERL-DSVWNALAFDAPWKSAQEKAN 937

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI--GIHLTGFADRIDLLKSGFVDI 915
                     FL+     ++    +       + +E+    + + G  DR++    G   +
Sbjct: 938  ARV--ALERFLKWHVMDRAGRTPVASEHDFDVTLEAGEYEVRIRGQMDRVETDADGRAYV 995

Query: 916  TDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKI 971
             D+KTG   P      +   PQL++   A++ G+  +       +      + L+Q    
Sbjct: 996  VDFKTGKQAPTSSEVARH--PQLAVYQLAVREGAVDEAFDGVRPQPGGAELVHLRQGAPK 1053

Query: 972  DCITNDKKKYSADELSEKSLKNL 994
                    K  A E  E      
Sbjct: 1054 RDGGETLPKVQAQESQEGPEGEW 1076


>gi|146298459|ref|YP_001193050.1| hypothetical protein Fjoh_0696 [Flavobacterium johnsoniae UW101]
 gi|146152877|gb|ABQ03731.1| hypothetical protein Fjoh_0696 [Flavobacterium johnsoniae UW101]
          Length = 919

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 142/1015 (13%), Positives = 296/1015 (29%), Gaps = 167/1015 (16%)

Query: 42   LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              L+  TI +P KRA   L     + T  K+ + P I S+ D V++  +   + S  L  
Sbjct: 20   DKLSETTIVLPNKRAKVFLIEALKKET-SKTILSPEIISIEDFVQDVASIRSIDSIEL-- 76

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
                   L E   + L   +K      +L+                 AK L    + I+ 
Sbjct: 77   -------LFEFYEVYLSVTDKQHQQSFELFANW--------------AKTLLQDFNEIDR 115

Query: 162  EEKKW-EDLHALKNEKYGMWW----LLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
                    L  LK+ +    W          L+    +W                  L+ 
Sbjct: 116  YLLDPYHVLSYLKDIEDIKKWGIEVENKTKLLENYIDFWK-----------------LLP 158

Query: 217  AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
               + L        I  G  G I         V N  +                      
Sbjct: 159  MYYDSLYNHLLNKSI--GYQGLIYRE-----AVNNLNH--------------------FS 191

Query: 277  KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
             + +  +           +  K++  L    +           +                
Sbjct: 192  NTISNRNFIFAGFNALNAAEEKIVQHLLALDQAKIYWDVDQTFLNDPYHDAGLFVRRFKE 251

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALI 392
            S           I +      ++ +I       +A      +   +++N      K A++
Sbjct: 252  SWKHYKSHPFEWIVDDFSQTKNIEVIGTPKTIGQAKIAGSIIEDLINKNPAASLDKVAVV 311

Query: 393  TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL--------NDFM 444
              + NL   V   L      ++I+ G          ++                    + 
Sbjct: 312  LGEENLLIPVLYSLPSSVGALNITMGYSGKNNPSQILVAKFFKMHTNALSRAGNYVFYYK 371

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
             +  ++ H L +      +L R         +  NK                        
Sbjct: 372  DVLDVLTHSLVEPYANVNHLVRIIKENNYTFITLNKIL---------------------- 409

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                                  +    + L +    K        + + + + +   Q+ 
Sbjct: 410  ---------------------DLNPNPSKLFSLLFQKWENGSVAVLENISAVLLLIKQSF 448

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
              D   +     F      + +           I  N      I  ++ID   V  + E 
Sbjct: 449  SNDNEEEKIAKTFVYAVFKVINKLINYYSQHKHID-NIDTLHAIYKQIIDVAEVSFEGEP 507

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYIGQ 683
               L I+G LESR+L+FDT+I+  +NEG +P   ++N F+   ++ +L L T  EK    
Sbjct: 508  LRGLQIMGVLESRVLDFDTVIVTSMNEGKFPAGKSQNSFIPYDVKKELGLPTFKEKDAIY 567

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
              H + +    +++    +   + +     SR++ +L V   +                 
Sbjct: 568  TYHFYHLLQRAKNIYLIYNTENDGLDAGERSRFITQLEVEKKSRHNLTFDIYNPVLPTTA 627

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
                                 E     +S S +   I +P   Y ++IL++  +   +++
Sbjct: 628  YL----PMVIPKSDAVMERLKEIALSGFSPSALTSYIRNPTEFYFQKILRIREVEEVEEN 683

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPE---------INHLMKQIIDSHFEKENLPPHID 853
                  GT+ H  +  L    + K   E         ++  + +     +++  +    +
Sbjct: 684  IALNTLGTIIHETLKALYDPFVEKFISESDILNCFKLLDDEVLKQFKLVYKEGEIKKGRN 743

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSI---EKIFVNIPAKMAIESI----GIHLTGFADRID 906
            ++   +  +   +FL+ E +   +    + I +    +  +        + + G  DRI+
Sbjct: 744  LLAFEVAKRNVSNFLKIELESIKNGDTIKIIALEKTFERELVHSELPFPVLIKGNVDRIE 803

Query: 907  LLKSGFVDITDYKTGDNPKKE-----------TAQKLIDPQLSLEAAALKAGSFSQIDCR 955
             L++G + I DYKTG   K               +     Q+   A   +  +       
Sbjct: 804  -LRNGKIRIVDYKTGKVEKTNIVLKSWNGLTQELKNDKIIQVLAYAFMYEQLAGE--TPI 860

Query: 956  KVANLFYIRLKQKFKIDCITNDK--KKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
            +V  + +  LK  F       DK  +   +  +    ++ ++ ++  + +   PF
Sbjct: 861  EVGIISFKNLKSGFLSFGFKEDKDLEVTVSKAILNSYVEEIVLLLKEIFDLSIPF 915


>gi|54298166|ref|YP_124535.1| hypothetical protein lpp2223 [Legionella pneumophila str. Paris]
 gi|53751951|emb|CAH13375.1| hypothetical protein lpp2223 [Legionella pneumophila str. Paris]
          Length = 858

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 101/704 (14%), Positives = 219/704 (31%), Gaps = 106/704 (15%)

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR---FGINIDIS 416
             +  A +++ E   +   L   + + KK+  ++  +      V   + R        +IS
Sbjct: 224  EVFSAKDKKTEYQELMTWLEKKIQQGKKQIGVVVPNLEQESSVLQRVLRDCFEPNLFNIS 283

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
             G PLS     S     L+    L +    A L++ P       E               
Sbjct: 284  LGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYIGKAKDEFLQRS---------- 333

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                                    +           S   K     +  H  +    L  
Sbjct: 334  ------------------------DYLQESKLLQDQSFPTKLFIEDVAYHTPKLAELLKN 369

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                   T    ++ +W +L    L  +       L +  ++   +           +  
Sbjct: 370  MNFYPEKT----TLDEWIELFQERLNGIGFPGDYVLNSEDYQCFNRFTMIFDEFRQLSLI 425

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                   E  + + +LID    +P+   S  + ILG LE+    FD+L + GL +   P+
Sbjct: 426  SSHLTKKEAFETLKQLIDNTIFQPQKSNSP-IQILGLLEASGCEFDSLWVMGLTDRCLPQ 484

Query: 657  NTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIAS 713
             T  +PF+   +Q +L +      + +  A    +     +   +++    +++ P +  
Sbjct: 485  QTRLSPFIPFELQRELGMPHSMPARELQYAKQILQRLQRGSMETVFSYPQFDDDTPNLPC 544

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
              +            +    +                    +     P    +  +   S
Sbjct: 545  SLITHYPAYLSRSADNKTNVQS--------------CLVPLEENYEVPVKSDESISGGTS 590

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------ 827
             +      P+   A+  LK + +       D  ++G L H I+  L ++  N+       
Sbjct: 591  LLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEHLIKLK 650

Query: 828  TPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
              E+   + + I            +  P  I  +      +I  S+LE E++     +  
Sbjct: 651  PAELERFIDEAIQGALNPIRQRHSQAFPDLIANVEYMRLKRIILSYLEWEKQR-PPFKIT 709

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNPKKETAQKLIDPQLS 938
             +     + +  +   +    DR+D + +    + DYK+   G  P     ++ ++PQL 
Sbjct: 710  GLEENHSINLAGLDFKV--RVDRLDEVGNKQW-VIDYKSTLPGGKP--WNEERPMEPQLL 764

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKYSADELS 987
            L A   +          ++  L  I+LK              +   I   K+  + ++  
Sbjct: 765  LYALLNE----------QINTLLLIQLKTGKIKLSGFSEEKWETKEINTLKEDENWEDYR 814

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSE-KSNIQSEYDHLARV 1030
            ++ L+ L  +   +++G  P     R        + ++ +L R 
Sbjct: 815  QRWLEQLTHLAEEIKSGYCP----PRPQNLTICQRCDFQNLCRF 854


>gi|326798724|ref|YP_004316543.1| ATP-dependent nuclease subunit B [Sphingobacterium sp. 21]
 gi|326549488|gb|ADZ77873.1| ATP-dependent nuclease subunit B [Sphingobacterium sp. 21]
          Length = 970

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 138/1100 (12%), Positives = 305/1100 (27%), Gaps = 227/1100 (20%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
            PF +E+   L+     E           L  + I    KR    ++    E+   K    
Sbjct: 3    PFLKEVANDLIARFGSE-----------LKDIAIIFNNKRPEVYMKKYLAELI-GKPIWS 50

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
            P   ++       F                + ++L L +     + ++            
Sbjct: 51   PSFFTVQQFFNNAFVEREAD---------KLTQILTLYQCYNAIQQRIN----------- 90

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDL------HALKNEKYGMWWLLAADF-- 187
                +S      +A+ + +    ++ +  +  ++       AL  +++  +      F  
Sbjct: 91   -GKTMSIERFYPMAETILNDFAQLDYDLVEPNEVYTELYDIALIEKQFPHFSEEQLSFMA 149

Query: 188  ------------------------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                                    L +    + + L E   ++   +  +  + +     
Sbjct: 150  QFWSTFNSEKHSYIQDRFIELWKTLPLLYTDFHQALKERGLATNSQFYRSFAKGDETSPS 209

Query: 224  -KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
                   ++  G      A A L          A+    +D +    +            
Sbjct: 210  YIYQFKQLVFVGFNALNKAEALLFKKWQK-EKRALFYFDVDRYYLDDVQQEAGAF----- 263

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                         L + L+   +    +  LG   N++  R   I        T+  +  
Sbjct: 264  -------------LRRNLNSHGL----LHALGAPFNQLADRKQNIKIVQTTSYTAQAKLL 306

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402
            D       +       +                              A++ AD  L    
Sbjct: 307  DSFLVDKKSTDAISQGL-----------------------------IAVLLADERLLIPT 337

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
               +       +I+ G P+S +    I+   L    +           K  L  +   E 
Sbjct: 338  LQSIPVSIET-NITMGFPISQSPIYGIVDLWLRIQERYLQQ-------KSDLIYYKDVEI 389

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
            +L                                          H      +  KE    
Sbjct: 390  FL-----------------------------------------SHPLIHTPDPIKEQVQQ 408

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNL--SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
            L+        PL   +    ++  +         K     ++ +      K    + +  
Sbjct: 409  LIYTNHYINVPLAELQAVSRTSFFDKRTDGRYLIKNLQEIIREIFQIRKEKELLTYPDAA 468

Query: 581  -GKTLSSLFSKIIETGSCIKANAIEW-IDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                +  + +++ +  S + + ++E+ I +I + + G T   + +  S + ++G LE+R 
Sbjct: 469  IFTEVFKILNQLYDALSTLPSLSVEFTISLIRKSLQGITAAIEGDPLSGVQVMGLLETRN 528

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHL 697
            L+F  + + G+NEG+ PK ++   F+   ++    L   E     +A+ F         +
Sbjct: 529  LDFKEIYILGVNEGILPKTSSSATFIPDSIRRAHGLPVLENQEALSAYLFYRLMQRAEQI 588

Query: 698  IYTRSLR-ENNIPTIASRWLQRLLVLGGTDFFDNLKKR--GQCYLDWTRKLDYTTKQPHY 754
                +   + N     SR++++L      +F +  +++           ++    +    
Sbjct: 589  TLVYNGHVDENSSGEISRFVKQLQFESHFNFIELKQQQIIKTNEAPPAMEIKKVNEIGKI 648

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
             +         +P   S +     +  P   + + + K+       +D +    G++ H 
Sbjct: 649  LQSYLNRDNSLRP-GISATAFTTFLQSPLLFFLKYVAKIKEPQLLTEDFEANRIGSIIHE 707

Query: 815  IITELIKKRINKNTPEINHLMKQIIDS-----------------HFEKENLPPHIDIIWR 857
            I+    ++    +       +K  +                    +   N P   + I  
Sbjct: 708  IMQWFYEELKRVSPHITAQRIKDQLSRLDHLCLKATAKDFYGNPAYFDINSPSSTEKIVL 767

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFVN------IPAKMAIESIG--IHLTGFADRIDLLK 909
             +  + +  F+ H+ K       I +       I   + ++     + L G  DR+D  K
Sbjct: 768  EIVKEYAQIFIHHDLKNTP-FTIIELENKQDYVIDFPITVDGKESSVKLYGIIDRVDE-K 825

Query: 910  SGFVDITDYKTGD-NPKKETAQKLIDP----------QLSLEAAALKAGSFSQIDCRKVA 958
             G + I DYKTG           L DP          Q        +     +     V 
Sbjct: 826  DGKIRIVDYKTGSDALDYTDIDSLFDPSSGKFNKALLQTLFYTYIYE----KKTGKIGVE 881

Query: 959  NLFYI--RLKQKF-----KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
               Y+  RL+Q+      K         + S     E     L +++  L N + PF   
Sbjct: 882  PNLYVARRLRQEGSLFYTKSRGSKFLLSEASLSSFKEAFELRLRQVLEDLFNQQIPF--K 939

Query: 1012 LRLSEKSNIQSEYDHLARVA 1031
                        Y    R  
Sbjct: 940  HDPRIDLPYNDHYQEFFRSG 959


>gi|226305705|ref|YP_002765665.1| ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
 gi|226184822|dbj|BAH32926.1| putative ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
          Length = 1103

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 128/1070 (11%), Positives = 291/1070 (27%), Gaps = 136/1070 (12%)

Query: 30   LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT-------GKKSTILPIIKSLG 82
            LV+             SV +   ++RA  ++R +            G ++T  P+++++ 
Sbjct: 61   LVDLAVQKISGGEDPESVLVLTQSRRAATQVREQITAGLLGYEQERGPQATREPLVRTVH 120

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                           N  P      RL+  A    + R  L   I+D     P       
Sbjct: 121  SYAFAVLRLQAAAHGNAPP------RLITGAEQDSVLREMLRGDIEDGALRWPER-LRPA 173

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                  A  L D++          EDL  L  ++    W+ A  F +   +         
Sbjct: 174  LGLNGFAVELRDLMLRANERGLGPEDLVKLGKKRGRPEWVAAGRFAEAYEQ--------- 224

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                        +  EA            + G+  +  AT   +          +++   
Sbjct: 225  -----GVLLRGSVGVEAPEATAPALDAAELIGAALTAFATDPELLRSERARIRHLLVDDA 279

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----KLLDFLDIKREDVKRLGNVSN 318
                P A        +    +          +         L  L  + ++ + +  V+ 
Sbjct: 280  QHLDPQAAQLVRLIGTGTAGTVIAGDPDQSVFGFRGADSAFLLGLAERGDERQIVLPVTY 339

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                    I+         ++ +   + + + +     + V ++      +EA  +A  L
Sbjct: 340  RNNADVASIAAKIAARLPGNLAHRIAVPSDLTDENPGRASVRVLG--TTAKEAAVVADTL 397

Query: 379  RMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSL 433
            R +   +       + ++ +       ++  L   G+ +  +A  +PL+     S L  +
Sbjct: 398  RRAHLLDGIAWSDMAVIVRSVPRTLAPLRRALLAAGVPVTTAATELPLARQHGVSGLLLV 457

Query: 434  LNAIFKL-NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            L A+            L+  P+           R       +A              S +
Sbjct: 458  LRALGGDQFTGDDALALMAGPIGGAEPVTLRRLRRGLRRVELA-------SGSDRDSSEL 510

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            L  I   ++         +L++ +      ++  + +   PL      +         + 
Sbjct: 511  LRLILIDEDRAQSKRLMGKLTDVEAAALNRVLSVLRKARVPLERGLGVEEVLWAAWQATG 570

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT-R 611
              +              +   +L         ++ +   +            ++D +T +
Sbjct: 571  LERRWAAASARGGPIGSQADRDLDAVVALFDAAANYVDRLPRS-----QLSGFVDYLTSQ 625

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
             I  ++    +     + ++    +    +  + + G+ EG+WP   A+   L      D
Sbjct: 626  EIPTDSRSRSVIAPDAVTVVSAHAAAGREWAVVAVAGVQEGLWPSLRARGSLLRTEALID 685

Query: 672  L------NLKTAEKYIGQAA--------HDFEMANGTRHLIYTRSLR--ENNIPTIASRW 715
            L         +A + + + A              +  R  +   ++     +   + SR+
Sbjct: 686  LVNGVSDGSDSAAERLSRTAPLLAEERRLFLVACSRARRRLLITAVESASGDTDLVPSRF 745

Query: 716  LQRLLVLGGTD----------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKR--------- 756
            +  L+                  +    R         +L      P             
Sbjct: 746  VDELIRGDAYSDDPSSDLDVVAPETGDTRVLSLPALVAQLRSVVCDPDIAHFDPEKHSRA 805

Query: 757  ----------------------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                                          P    E  P + S S I+ L   P      
Sbjct: 806  ARQLARLAAAGVRGAHPDQWYGTAEPSTAAPMWQPEDGPVSLSPSTIELLETCPLRWVFE 865

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
            R            D      GTL H     L++    +  P+      +      +  + 
Sbjct: 866  RHGG------SDGDNTHAIAGTLVH----TLVQALAGRIPPDQVEKALENAWESIDLGSQ 915

Query: 849  PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFAD 903
                  + R    ++  +F       +  + ++ V +  +  +E        + L G  D
Sbjct: 916  WYSRRELNRTR--EMLATFTAWMNATRGELTEVGVEVAVEGVLEPREEGAPAVKLRGRID 973

Query: 904  RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            R++    G   + D KT  NP    A +    QL+    A   G+ +     +      +
Sbjct: 974  RLERDTQGRPVVVDVKTARNPVSNEAAQSHA-QLAAYQVAAAEGAIAGEPATQPGGARLV 1032

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
             + +  K D      +     E  E     +       Q  +  +++ + 
Sbjct: 1033 FVAKSNKKDGAAQRVQPPLTAEAVEMWRDVIHNAAAATQGPQ--YLARVN 1080


>gi|157827002|ref|YP_001496066.1| endonuclease [Rickettsia bellii OSU 85-389]
 gi|157802306|gb|ABV79029.1| RecB family exonuclease [Rickettsia bellii OSU 85-389]
          Length = 846

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 100/470 (21%), Positives = 186/470 (39%), Gaps = 28/470 (5%)

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
            P++W +E G  LS   + + E    I  +  ++  I   L+    VK      S + I  
Sbjct: 388  PDIWEKEGGAELSEFLNNLKEFSGSINVSKKDFPKIFALLLSN--VKYYKNIESKIIIGS 445

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              E  L  FD +IL   N   W   T  +P+LS+  +  LN+   E      ++ F++  
Sbjct: 446  PEELALSRFDLVILPHFNSDNWSNTTTTHPYLSKEAKQILNIDYDEITPKLYSNYFDLLL 505

Query: 693  GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
                +I   + +     +       +L          ++  +  C +     LD TT   
Sbjct: 506  QNEEVIILNAKKYAGKLSTPCNLFLKLSN-KNVIPNKSVIPQLDCGISGVIFLDSTTSTQ 564

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                          P   S ++I+ LI +PY  YA++ILKL       ++P  +D G   
Sbjct: 565  DDIEQAAH--STFFPNILSVTDIETLIRNPYGFYAKKILKLRTQDKIWEEPKISDFGNFI 622

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H ++ E  K    +N  +    +  I ++      LP +    W+     +S +F+  + 
Sbjct: 623  HKVLEEYSKNYDQQNMLDQQQALLNIGNNILHSTILPTYTKKTWQTKLTLLSKAFILFDM 682

Query: 873  KIQSSIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
            + + + +KI+  I  +  + I    I + G ADRI++ KS  + I DYKTG  P K+  +
Sbjct: 683  ERRKNCQKIYFEIKGELNLNIAGQNIKIIGIADRIEISKSNCITILDYKTGTIPTKKEIE 742

Query: 931  KLIDPQLSLEAAALKAGSF-------------SQIDCRKVANLFYIRLKQKFKIDCITND 977
              + PQL +E+  +    F                +  +   + Y+++      +     
Sbjct: 743  LGLSPQLIIESLMILENGFNISHSYAPLCHSCESGNPIENITIAYVKITS---TEPYVQT 799

Query: 978  KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHL 1027
             +   + E  EK  + LI ++       + F+  L +S+     ++Y HL
Sbjct: 800  TEISLSMETLEKHKQGLIRLLEYYVK-NKSFVYDLDMSK----YNDYLHL 844



 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 80/228 (35%), Gaps = 44/228 (19%)

Query: 8   VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67
           +F I+    F ++    +++    EN R           + I +P   +  +L+    + 
Sbjct: 13  IFMIS-DISFLQDFAEFIVSKFGKENLRK---------ELKIILPNSLSCTKLKGLLTDN 62

Query: 68  TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
              ++  LPII     ++ +K +++          +S ++ L  L+++I  ++       
Sbjct: 63  YNVQN--LPIIIPFNAIISKKDSSEDY--------MSKMEELFTLSKIITEYKK------ 106

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
                     L  +P  A+  A  L  +   +         +  ++      +W     F
Sbjct: 107 ----------LDFTPEEALKAAGILNKLFADLVNNNVD---IKLIETYNNSEYWQNIYKF 153

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
           L+ +   W +   + + +  +   +  +        K +   +I+AG 
Sbjct: 154 LEYSFLKWQKNEKQSSNNYKLKLLLEEIAR-----TKNSCKQVILAGI 196


>gi|89098017|ref|ZP_01170903.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. NRRL B-14911]
 gi|89087180|gb|EAR66295.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. NRRL B-14911]
          Length = 1163

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 120/951 (12%), Positives = 256/951 (26%), Gaps = 135/951 (14%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLH----ALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                 +  ++   +    +   L      L++ +           +++  K + E L  L
Sbjct: 118  GFIGQMEQMLTEFKRYCIEPGALAGKREELESRRGSRGLQDKLHDMELIYKQFEEGL--L 175

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                       L+  +A          + I G     P    ++  +        V   L
Sbjct: 176  GKYVDSEDYFRLLTEKAGMSEYLKNAEVYIDGFYSYTPQEYMIIEQLIRVCKRVTVTFTL 235

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            D    TA+                       + ++          + V  +  ++     
Sbjct: 236  DRPYKTAV-----------------PEDLHLFRMSA------ESYQSVYEIAGMAGAEME 272

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            + ++++      + S         ++        ++V + +A N R E    A  ++   
Sbjct: 273  QEVLLNGQQRWDNDSLRHMERAFSSRPAEPFAGKANVHIAQAVNRRAEIEGAAREIKRLA 332

Query: 383  DENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             E     K  AL+  + ++   +       +GI   I     +       ++ S L  I 
Sbjct: 333  AEEGYRFKDIALLMRNGSVYHDIIETIFDDYGIPFFIDQKRTMMNHPLIELIRSSLEVIT 392

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                +  +   VK  L      +   +    + LE   L                  RI 
Sbjct: 393  GYWRYEPVFRAVKTELLFPSRADLGVIREKMDKLENYVLAYGVQGEKWTKKDRWNYRRIR 452

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVD----HILQCITPLVTYKTNKNSTCGNLSISDW 553
              +    V     +  EE+      L+      + + +    + +    +    L   D 
Sbjct: 453  GLEFEQIVQTDLEKEREEELNQMRDLIAAPILRLSRRLKKADSGRRLCEAVYLYLEELDI 512

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                    +    D+   +     ++    +  L  + +E     K +  ++  I+   +
Sbjct: 513  PTKLERW-KLEEEDKGNLVKAREHDQAWNAVMELLDQFVEMLGDEKISMKQFASILDSGM 571

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL- 672
            +             +      +SRL +     + GLNEGV P    +   L+   +  L 
Sbjct: 572  ESLRFSLVPPAMDQVLAADLDKSRLSDIKAAFVIGLNEGVLPGKFTEEGVLADADREKLL 631

Query: 673  --NLKTAE-KYIGQAAHDF--EMANGTR--HLIYTRS-LRENNIPTIASRWLQRLLVLGG 724
               LK A    +     DF    A  T   HL  +     E     + S ++ R   L  
Sbjct: 632  QSGLKIAHGSKVRLLDEDFLAYRAFSTPSSHLYISYPLANEEGKALMPSPYISRANELFP 691

Query: 725  TDFFDNLKKRGQCYL-------------------------------------------DW 741
                                                                        
Sbjct: 692  EAGQLMWMADPFELPEEEQLLFAMNEDTSLSYLASQLQMNKRGYKISGIWWDVYNYYHAH 751

Query: 742  TRKLDYTTKQPHYKRPK---------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
             R  D   K       +             L  +    S S ++   + P++ +A+  LK
Sbjct: 752  PRLGDTARKVLSSLHYENRTARLSEEAAKELYGETIQASVSRMELFHSCPFSHFAQHGLK 811

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT----------PEINHLMKQIIDSH 842
            L     F+   +  D G LFH  +  + +  ++K             ++     +++   
Sbjct: 812  LRDRKVFR--LEAPDIGDLFHAALKFIAETVMDKRMSWSDMTRQECEKLAKEAVEMLAPK 869

Query: 843  FEKENLPPHIDIIWRHL-FHKISHS--FLEHEEKIQSSIEKIFVNIPA--KMAIESIGIH 897
             + E L       +       I     ++  E    S    + + +    K  +  +   
Sbjct: 870  LQNEILLSSNRHFYIKRKLENIISRASYILSEHSRASGFSPVGLELGFGPKDKLPPLSFK 929

Query: 898  LT--------GFADRIDLLKSG---FVDITDYKTGDNP-KKETAQKLIDPQLSLEA-AAL 944
            L         G  DR+D  ++    ++ + DYK+             +  Q+       +
Sbjct: 930  LRNGTNMELVGRIDRVDKAENENGVYLRVIDYKSSARDLNISEVYYGLALQMLTYLDIII 989

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                         A + Y  +      + I N  K  + DE+ E+  K   
Sbjct: 990  THSGDIAGKKADPAGVMYFHV-----HNPIVNSPKLLTLDEIEEEIFKKFK 1035


>gi|124006749|ref|ZP_01691580.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123987657|gb|EAY27357.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 1030

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 143/1089 (13%), Positives = 318/1089 (29%), Gaps = 171/1089 (15%)

Query: 37   DPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLS 96
            D      L  + + +PT+R+   LR  F+      +   P I ++ D V E    D   +
Sbjct: 14   DHHGTEGLKGLCVVMPTRRSCHVLR-HFMVAQKVDAEDFPTILTIDDFVTETTQTDTSSA 72

Query: 97   YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156
              L         LLEL  +      ++       +    L         +  AK L   +
Sbjct: 73   IVL---------LLELYDVFRKIDPEIKLEKFTSWGYVLLKDFEQIDRNLVDAKKLFSNL 123

Query: 157  DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
              I+    +  +L   +       +    + L+     + ERL     +        L  
Sbjct: 124  SDIKN--IERWNLGEQQITTKISRYFKLWENLQETYTQFQERLTSNGQAYMGMLYRKLAN 181

Query: 217  AEAEHLMKGTKGPIIIA-GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
               E L++  K    +  G      +   +   +       +     D ++   I N   
Sbjct: 182  EIDELLIQPDKYNQFVFIGFNALTKSEESIFKQLVKKGKAEVFWDTDDYYMREGIENKAG 241

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                         + + Q       + L   +++V+ +   +  + GR+           
Sbjct: 242  MFLKQYKKDWAGDAWNFQG------NHLQETKKEVQVISVANASLQGRA----------- 284

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395
            T+ +     +     N     +                               +A++ +D
Sbjct: 285  TNQLLENWAINPLKANTNGQGTG---------------------------GSDTAIVLSD 317

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN-------------------- 435
             N+   +   L++    ++I+ G+ L  +   +++ +L                      
Sbjct: 318  ENILVPLIHSLSKEYAGMNITMGLALRNSALFNLVDALFEQNQTKIRVVLEQEEEKEEEE 377

Query: 436  ---AIFKL--------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                              + +I  L+ HP  +  F  K  +      E       +    
Sbjct: 378  KDQTATDDKKPEKVSKFSYRSIIKLLNHPFIR-QFERKVEAEITTEGETRPGFIQEVVRF 436

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
            I     + L + A   + T  P ++   ++++            Q    L +   N    
Sbjct: 437  INKNNQIFLSQAALL-DFTETPLFKEDKTDDELARIHQQAPAFRQLFEILFSSWKNALDA 495

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                      +  +  L             + + E+ + + +     I T      +   
Sbjct: 496  IACF------EQLMELLNF-----ETNQFEIKYAEQFREILNDLKFFIRTRRG-FISIHT 543

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            +   + +      V    EKS++L +L  +E+R ++FD +IL  +NE + PK    N F+
Sbjct: 544  FKIFLYQAFREAKVAFDSEKSTSLQVLSLVETRNIDFDNVILLSVNETILPKGKKSNSFI 603

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTR-SLRENNIPTIASRWLQRLLV- 721
               +     L T        ++ F       + +     S  +       SR L +L   
Sbjct: 604  PFDISQSYGLPTYVDQEAMLSYHFYRLLQRAKKVAILHVSPSDTYGGYEKSRLLLQLQHD 663

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
            L   +    +K +   +       +         +      ++      S   I   I+ 
Sbjct: 664  LSQYNPEIKVKNQVGRFRKSDEYEEQGLVIQKNTQVM-DKLMQKFKEGLSPWHINAFISC 722

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK----RINKNTPEINHLMKQ 837
                Y  +I ++      ++       G++ H I+ ++ ++          P I   + +
Sbjct: 723  SLKYYFNQIAEIGNSIVVEESLGADKFGSIVHEILEDIYRELSAKHKEIEAPHIEAELPE 782

Query: 838  IIDSHFEKENLPPHIDIIW-------RHLFHKISHSFLEHEE----KIQSSIEKIFVN-- 884
            + +   EK     + + +        + L      +FL+++     +  +  E + +   
Sbjct: 783  VQNRVNEKFLQEEYANYLQTGENFITKKLATNFVTNFLKNQAKEAKENGAPFEILSLENK 842

Query: 885  ---------------IPAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGDNP--- 924
                              +  +      + + G  DRID +    V I DYKTG      
Sbjct: 843  NRWTDPQEAFSPVLSAQFEAEVNGQVTEVKIKGITDRIDKIGE-KVRIIDYKTGLVEKKD 901

Query: 925  ---KKETAQKLID-------PQLSLE-----AAALKAG----SFSQIDCRKVANLFYIRL 965
                 +  ++L+         QL L         ++ G       ++  ++  +     L
Sbjct: 902  VKLSNDDLERLVSDTKADKVRQLWLYKYILSKLIIEKGEYYIGEHKLTEKEPISAGIYSL 961

Query: 966  KQ------KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
            +       + K      +    +  E   KS   L EI+  + +  QP          + 
Sbjct: 962  RNLKEGLLELKSSVKDQELFSETLHEYVHKSEIYLQEIIHNMADETQP--IERTPDINTC 1019

Query: 1020 IQSEYDHLA 1028
            +   Y  + 
Sbjct: 1020 VYCAYKGIC 1028


>gi|229490969|ref|ZP_04384802.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121]
 gi|229322085|gb|EEN87873.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121]
          Length = 1120

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 127/1067 (11%), Positives = 281/1067 (26%), Gaps = 130/1067 (12%)

Query: 30   LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT-------GKKSTILPIIKSLG 82
            LV+             SV +   ++RA  ++R +            G ++T  P+++++ 
Sbjct: 78   LVDLAVQKISGGEDPESVLVLTQSRRAATQVREQITAGLLGYEQERGPQATREPLVRTVH 137

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                           N  P      RL+  A    + R  L   I+D     P       
Sbjct: 138  SYAFAVLRLQAAAHGNAPP------RLITGAEQDSVLREMLRGDIEDGALRWPER-LRPA 190

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                  A  L D++          EDL  L  ++    W+ A  F +   +         
Sbjct: 191  LGLNGFAVELRDLMLRANERGLGPEDLVKLGKKRGRPEWVAAGRFAEAYEQ--------- 241

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                        +  EA            + G+  +  AT   +          +++   
Sbjct: 242  -----GVLLRGSVGVEAPEATAPALDAAELIGAALTAFATDPELLRSERARIRYLLVDDA 296

Query: 263  DCHIPTAI--WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
                P A      I   +     +     +   +  A     L +     +R   +    
Sbjct: 297  QHLDPQAAQLVRLIGTATAGTVIAGDPDQSVFGFRGADSAFLLGLAERGDERQIVLPTTF 356

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
               + V S +              +        +     ++       +EA  +A  LR 
Sbjct: 357  RNNADVASIAAKIAARLPGNLAHRIAVPSDLTDEDPGRASVRVLGTTAKEAAVVADTLRR 416

Query: 381  SLDENK----KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLN 435
            +   +       + ++ +       ++  L   G+ +  +A  +PL+     S L  +L 
Sbjct: 417  AHLLDGIAWSDMAVIVRSVPRTLAPLRRALLAAGVPVTTAATELPLARQHGVSGLLLVLR 476

Query: 436  AIFKL-NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            A+            L+  P+           R       +A              S +L 
Sbjct: 477  ALGGDQFTGDDALALMAGPIGGAEPVTLRRLRRGLRRVELA-------SGSDRDSSELLR 529

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
             I   ++         +L++ +      ++  + +   PL      +         +   
Sbjct: 530  LILIDEDRAQSKRLMGKLTDVEAAALNRVLSVLRKARVPLERGLGVEEVLWAAWQATGLE 589

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            +              +   +L         ++ +   +               + ++ I 
Sbjct: 590  RRWAAASARGGPIGSQADRDLDAVVALFDAAANYVDRLPRSQLAGFVDY----LTSQEIP 645

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-- 672
             ++    +     + ++    +    +  + + G+ EG+WP   A+   L      DL  
Sbjct: 646  TDSRSRSVITPDAVTVVSAHAAAGREWAVVAVAGVQEGLWPSLRARGSLLRTEALIDLVN 705

Query: 673  ----NLKTAEKYIGQAA--------HDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQR 718
                   +A + + + A              +  R  +   ++     +   + SR++  
Sbjct: 706  GVSDGSDSAAERLSRTAPLLAEERRLFLVACSRARRRLLITAVESASGDTDLVPSRFVDE 765

Query: 719  L----------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------------ 756
            L                   +    R         +L      P                
Sbjct: 766  LIRGDVYADDPSSDLDVVAPETGDTRVLSLPALVAQLRSVVCDPDIAHFDPEKHSRAARQ 825

Query: 757  -------------------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                                       P    E  P + S S I+ L   P      R  
Sbjct: 826  LARLAAAGVRGAHPDQWYGTAEPSTAAPMWQPEDGPVSLSPSTIELLETCPLRWVFERHG 885

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
                      D      GTL H     L++    +  P+      +      +  +    
Sbjct: 886  G------SDGDNTHAIAGTLVH----TLVQALAGRIPPDQVEKALENAWESIDLGSQWYS 935

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFADRID 906
               + R    ++  +F       +  + ++ V +  +  +E        + L G  DR++
Sbjct: 936  RRELNRTR--EMLATFTAWMNATRGELTEVGVEVAVEGVLEPREEGAPAVKLRGRIDRLE 993

Query: 907  LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
                G   + D KT  NP    A +    QL+    A   G+ +     +      + + 
Sbjct: 994  RDTEGRPVVVDVKTARNPVSNEAAQSHA-QLAAYQVAAAEGAIAGEPATQPGGARLVFVA 1052

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
            +  K D      +     E  E     +       Q  +  +++ + 
Sbjct: 1053 KSNKKDGAAQRVQPPLTAEAVEMWRDVIHNAAAATQGPQ--YLARVN 1097


>gi|307611113|emb|CBX00755.1| hypothetical protein LPW_24591 [Legionella pneumophila 130b]
          Length = 831

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 220/704 (31%), Gaps = 106/704 (15%)

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR---FGINIDIS 416
             +  A +++ E   +   L   + + KK+  ++  +      V   + R        +IS
Sbjct: 197  EVFSAKDKKTEYQELMTWLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFEPNLFNIS 256

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
             G PLS     S     L+    L +    A L++ P       E               
Sbjct: 257  LGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFLQRS---------- 306

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                                    +           S   K     +  H  +    L  
Sbjct: 307  ------------------------DYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKN 342

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                   T    ++ +W +L    L  +       L +  ++   +           +  
Sbjct: 343  MNFYPEKT----TLDEWIELFQERLNGIGFPGDDVLNSEDYQCFNRFTMIFDEFRQLSLI 398

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                   E  + + +LID    +P+   S  + ILG LE+    FD+L + GL++   P+
Sbjct: 399  SSYLTKKEAFEALKQLIDNTIFQPQKSNSP-IQILGLLEASGCEFDSLWVMGLSDRCLPQ 457

Query: 657  NTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIAS 713
             T  +PF+   +Q +L +      + +  A    +     +   +++    E++ P +  
Sbjct: 458  QTRLSPFIPFELQRELGMPHSIPARELQYAKQILQRLQRGSVETVFSYPQFEDDTPNLPC 517

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
              +            +    +                    +     P    +  +   S
Sbjct: 518  SLITHYPAYLSRPADNKTNVQS--------------CLVPLEENYEVPVKPDESISGGTS 563

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------ 827
             +      P+   A+  LK + +       D  ++G L H I+  L ++  N+       
Sbjct: 564  LLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEQLIKLK 623

Query: 828  TPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
              E+   + Q I            +  P  +  +      +I  S+LE E++     +  
Sbjct: 624  PDELERFIGQAIQGALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQR-PPFKIT 682

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNPKKETAQKLIDPQLS 938
             +     + +  +   +    DR+D + +    + DYK+   G  P     ++ ++PQL 
Sbjct: 683  GLEENHSINLAGLDFKV--RVDRLDEVGNKQW-VIDYKSTLPGGKP--WNEERPMEPQLL 737

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKYSADELS 987
            L A   +          ++  L  I+LK              +   I   K+  + ++  
Sbjct: 738  LYALLNE----------QINTLLLIQLKTGKIKLSGFSEEKWETKEINTLKEDENWEDYR 787

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSE-KSNIQSEYDHLARV 1030
            ++ L+ L  +   +++G  P     R        + ++ +L R 
Sbjct: 788  QRWLEQLTHLAEEIKSGYCP----PRPQNLTICQRCDFQNLCRF 827


>gi|256005815|ref|ZP_05430766.1| ATP-dependent nuclease subunit B [Clostridium thermocellum DSM 2360]
 gi|255990216|gb|EEU00347.1| ATP-dependent nuclease subunit B [Clostridium thermocellum DSM 2360]
 gi|316941648|gb|ADU75682.1| ATP-dependent nuclease subunit B [Clostridium thermocellum DSM 1313]
          Length = 1146

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 133/1066 (12%), Positives = 291/1066 (27%), Gaps = 172/1066 (16%)

Query: 47   VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
            + + VP +   Q  R   I + G    +   + S   +    F     ++Y   P + + 
Sbjct: 34   LVLLVPEQFTFQAERD-LISVLGTGGILKTEVLSFSRIAYRTFNEAGGITY---PHIHSA 89

Query: 107  QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
             + + L R++   +                 +    A+       L+ +I   +      
Sbjct: 90   GKCMILYRILDKMK-------------GSFRVFSKTADRQGFVNTLSTLITEFKKYNVTP 136

Query: 167  EDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            EDL  +  E +           L      + + + E     P        +     +   
Sbjct: 137  EDLEKVSKELEEDNPMKEKLMELTAIYDLFEKTIAERYR-DPDDDLTLAAKKL-GSIPLY 194

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
                I I G TG  P   +++  +        +    D                +   ++
Sbjct: 195  DGAEIWIDGFTGFTPQEYQIIGQLMKKAQRVNISFCTD--------------CLDGDLND 240

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
            T   +  + +  KL+          K  G         +      F            + 
Sbjct: 241  TDIFSSIKTAYRKLVK-------MAKENGIPVEPSVVLNSKPLFRFSQSPELSHLEQYLY 293

Query: 346  ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARR 401
                    +   D++L  + N   E  + A  +     +     ++ A++T + +   + 
Sbjct: 294  AYPYKTYNEKTKDISLFSSVNMFAEVEACARDIVRLCRDRGMRYREIAVVTGNLDGYEKL 353

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            ++   + +GI   I   + +       ++ S+L+   +   + A+   +K  L       
Sbjct: 354  IEAVFSEYGIPCFIDRKVDIVNHPLVRLIMSMLDIFIENWSYEAVFRYLKTGLTGID--- 410

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                 + + LE   L          + +                     +  EE KEL  
Sbjct: 411  ---RESIDRLENYVLACGIRGSCWTETEEW---------KMVPELIPNEKSLEEAKELLE 458

Query: 522  LLVDHILQCITPLVTYK----TNKNSTCGNLSISDWTKLT-----VTCLQNVCLDEHRKL 572
             +     Q + PL+ ++      K ++    S+ D+         +        +     
Sbjct: 459  DVNRIRAQVVAPLMEFRKKTKGRKKASDFCASLYDFLCTLGIPEKIEDAIEKFRESGNLN 518

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
                + +    +  +F   +E          ++  I+        +         + +  
Sbjct: 519  LANEYSQVWNAVMEVFDHTVEVMGDETFGIEKFARILEIGFGECKIGLIPASLDQVLVGS 578

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAA 685
               SR      L + G N+GV+P    +   LS   ++       +L   T  +      
Sbjct: 579  LERSRSHEIKALYILGANDGVFPPAVMEEGILSDQDRAVLNNAGIELASDTRTQAFDGQY 638

Query: 686  HDFEMANGT-RHLIYTRS-LRENNIPTIASRWLQRLLVL--------------GGTDFFD 729
              +        +L  + S           S  + RL  L                 +  +
Sbjct: 639  LIYRALTTAGNYLRISWSIADHEGRTLRPSLVVFRLRKLFLNITETSNILPSGSLEEEME 698

Query: 730  NLKKRGQCYLDWTRKLDYTT---KQPHYKRPKPFPPLEAQPRTY---------------- 770
             L      +      L       +     +                              
Sbjct: 699  LLSGNSPAFKSMVSALRQKADGKEIKPVWQEAYRWFAVQDEWRGKCEALRAAFQYKNLAQ 758

Query: 771  -----------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                             S S +++    P+A Y +  L               D GT  H
Sbjct: 759  PVSREKIAALYGEPAVSSVSRLEKYTACPFAFYVQYGLGAKERQ--IYSLRPPDVGTFMH 816

Query: 814  NIITELIK-------KRINKNTPEINHLMKQIIDSHFEKE---NLPPHIDIIWRH-LFHK 862
             +I +  +          + +    +  + +I+D   EK     +              +
Sbjct: 817  AVIEKFSRMVAKRNISWRDLDRDWCSEKVSEIVDEMLEKMQGSGIAASRRYTALTLRLKR 876

Query: 863  ISHS--FLEHEEKIQSSIEKIFVNIPAK---------MAIESIG-IHLTGFADRID--LL 908
            +     +L  E   +SS E +   +            + ++S   IHLTG  DR+D    
Sbjct: 877  VVARAVWLIAEHIRRSSFEPVAYEVGFGENGKYPPIVIELDSGEKIHLTGRIDRVDALKT 936

Query: 909  KSGF-VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQ-IDCRKVANLFYIRL 965
            + G  + I DYK+G    K       +  QL     AL     +   +      + Y ++
Sbjct: 937  EDGTYLRIVDYKSGGKDFKLSDVFYGLQIQLITYLDALWESGEADENNPVLPGGVLYFKI 996

Query: 966  KQKFKIDCITNDKKKYSADELSEKSLKNLI---------EIVTLLQ 1002
                  D I     + + +E+ +  +K L          +++  + 
Sbjct: 997  D-----DPIIRGNGRMTEEEIEKAIMKQLRMKGLLLADVKLIREMD 1037


>gi|125974532|ref|YP_001038442.1| DNA helicase/exodeoxyribonuclease V, subunit B [Clostridium
            thermocellum ATCC 27405]
 gi|281419056|ref|ZP_06250073.1| ATP-dependent nuclease subunit B [Clostridium thermocellum JW20]
 gi|251764585|sp|A3DH20|ADDB_CLOTH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|125714757|gb|ABN53249.1| DNA helicase/exodeoxyribonuclease V, subunit B [Clostridium
            thermocellum ATCC 27405]
 gi|281407205|gb|EFB37466.1| ATP-dependent nuclease subunit B [Clostridium thermocellum JW20]
          Length = 1146

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 133/1069 (12%), Positives = 291/1069 (27%), Gaps = 178/1069 (16%)

Query: 47   VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
            + + VP +   Q  R   I + G    +   + S   +    F     ++Y   P + + 
Sbjct: 34   LVLLVPEQFTFQAERD-LISVLGTGGILKTEVLSFSRIAYRTFNEAGGITY---PHIHSA 89

Query: 107  QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
             + + L R++   +                 +    A+       L+ +I   +      
Sbjct: 90   GKCMILYRILDKMK-------------GSFRVFSKTADRQGFVNTLSTLITEFKKYNVTP 136

Query: 167  EDLH----ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            EDL      L+ +            L      + + + E     P        +     +
Sbjct: 137  EDLEKVSKELEEDNPVKE---KLMELTAIYDLFEKTIAERYR-DPDDDLTLAAKKL-GSI 191

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
                   I I G TG  P   +++  +        +    D                +  
Sbjct: 192  PLYDGAEIWIDGFTGFTPQEYQIIGQLMKKAQRVNISFCTD--------------CLDGD 237

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
             ++T   +  + +  KL+          K  G         +      F           
Sbjct: 238  LNDTDIFSSIKTAYRKLVK-------MAKENGIPVEPSVVLNSKPLFRFSQSPELSHLEQ 290

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-L 398
             +         +   D++L  + N   E  + A  +     +     ++ A++T + +  
Sbjct: 291  YLYAYPYKTYNEKTKDISLFSSVNIFAEVEACARDIVRLCRDRGMRYREIAVVTGNLDGY 350

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
             + ++   + +GI   I   + +       ++ S+L+   +   + A+   +K  L    
Sbjct: 351  EKLIEAVFSEYGIPCFIDRKVDIVNHPLVRLIMSMLDIFIENWSYEAVFRYLKTGLTGID 410

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                    + + LE   L          + +                     +  EE KE
Sbjct: 411  ------RESIDRLENYVLACGIRGSCWTETEEW---------KMVPELIPNEKSLEEAKE 455

Query: 519  LAVLLVDHILQCITPLVTYK----TNKNSTCGNLSISDWTKLT-----VTCLQNVCLDEH 569
            L   +     Q + PL+ ++      K ++    S+ D+         +        +  
Sbjct: 456  LLEDVNRIRAQVVAPLMEFRKKTKGRKKASDFCASLYDFLCTLGIPEKIEDAIEKFRESG 515

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                   + +    +  +F   +E          ++  I+        +         + 
Sbjct: 516  NLNLANEYSQVWNAVMEVFDHTVEVMGDETFGIEKFARILEIGFGECKIGLIPASLDQVL 575

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIG 682
            +     SR      L + G N+GV+P    +   LS   ++       +L   T  +   
Sbjct: 576  VGSLERSRSHEIKALYILGANDGVFPPAVMEEGILSDQDRAVLNNAGIELASDTRTQAFD 635

Query: 683  QAAHDFEMANGT-RHLIYTRS-LRENNIPTIASRWLQRLLVL--------------GGTD 726
                 +        +L  + S           S  + RL  L                 +
Sbjct: 636  GQYLIYRALTTAGNYLRISWSIADHEGRTLRPSLVVFRLRKLFLNITETSNILPSGSLEE 695

Query: 727  FFDNLKKRGQCYLDWTRKLDYTT---KQPHYKRPKPFPPLEAQPRTY------------- 770
              + L      +      L       +     +                           
Sbjct: 696  EMELLSGNSPAFKSMVSALRQKADGKEIKPVWQEAYRWFAVQDEWRGKCEALRAAFQYKN 755

Query: 771  --------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                                S S +++    P+A Y +  L               D GT
Sbjct: 756  LAQPVSREKIAALYGEPAVSSVSRLEKYTACPFAFYVQYGLGAKERQ--IYSLRPPDVGT 813

Query: 811  LFHNIITELIK-------KRINKNTPEINHLMKQIIDSHFEKE---NLPPHIDIIWRH-L 859
              H +I +  +          + +    +  + +I+D   EK     +            
Sbjct: 814  FMHAVIEKFSRMVAKRNISWRDLDRDWCSEKVSEIVDEMLEKMQGSGIAASRRYTALTLR 873

Query: 860  FHKISHS--FLEHEEKIQSSIEKIFVNIPAK---------MAIESIG-IHLTGFADRID- 906
              ++     +L  E   +SS E +   +            + ++S   IHLTG  DR+D 
Sbjct: 874  LKRVVARAVWLIAEHIRRSSFEPVAYEVGFGENGKYPPIVIELDSGEKIHLTGRIDRVDA 933

Query: 907  -LLKSGF-VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQ-IDCRKVANLFY 962
               + G  + I DYK+G    K       +  QL     AL     +   +      + Y
Sbjct: 934  LKTEDGTYLRIVDYKSGGKDFKLSDVFYGLQIQLITYLDALWESGEADENNPVLPGGVLY 993

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLI---------EIVTLLQ 1002
             ++      D I     + + +E+ +  +K L          +++  + 
Sbjct: 994  FKID-----DPIIRGNGRMTEEEIEKAIMKQLRMKGLLLADVKLIREMD 1037


>gi|251796230|ref|YP_003010961.1| ATP-dependent nuclease subunit B [Paenibacillus sp. JDR-2]
 gi|247543856|gb|ACT00875.1| ATP-dependent nuclease subunit B [Paenibacillus sp. JDR-2]
          Length = 1175

 Score =  214 bits (544), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 105/1018 (10%), Positives = 256/1018 (25%), Gaps = 132/1018 (12%)

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
                     +    P+I  + +    +    LL   +L+  +    + L   RL      
Sbjct: 20   DAIRAKLQGEPDGAPLIMLVPEQATFQTEYALLKDTSLSGTIRA--QALSFRRLAFRVMQ 77

Query: 122  KLPDIIKDLYPE---------------SPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
            +          +                 L L  S A      + L +++   +      
Sbjct: 78   ETGGTALIPISDNGKHMMLFKIIHRLGKQLELFQSGAEQPGFIERLGELLTEWKRYGIDA 137

Query: 167  EDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
              L       +           L++      + L  L         +  + A   +    
Sbjct: 138  NLLKEKTASVEDSTLLDRKLHDLRLVYDKLEQEL--LGLYIDSEDYLTQLIAGYAYAPAM 195

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
                + I G  G  P     + T+        V   LD            E    +   +
Sbjct: 196  QGAHLWIDGFHGFTPKEYDALGTLIASSAEVTVALTLDRPYDN------GEMPHELELFH 249

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
             T  T+    L+ L     +   D   LG  +   +  S +++                 
Sbjct: 250  PTAETY--GKLSALAAQAGVSVYDTVVLGEGAPTRFLGSTMLAHLEKHYGGRTPMLIPDK 307

Query: 346  ENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSALITADRNLARR 401
            +    +   C   ++L  + N R E  + A  +    R      +  + ++         
Sbjct: 308  KMLAVDSPAC--GLSLHASANRRAEVEAAARDMVRRAREEGLRWRDMAVMVRNAAEYTDY 365

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            ++     + I   +              + S L  +     + A+   +K  L       
Sbjct: 366  IQTIFDDYEIPYFLDQKNNTVHHPLVEFIRSALETVLHGWHYEAVFRCIKTELLFPIDGS 425

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                   + LE   L    + +  +D          + ++        S  ++ + +  +
Sbjct: 426  MS-RELFDRLENYVLAAGVDGWKWLDRSRWKPFMQQSLEDEPDTVSEPSAKAKREFQAIM 484

Query: 522  LLVDHILQCITPLV-------TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
               + I+  +             K    +    L  +D         +        +   
Sbjct: 485  AAREAIVPPLRRFEQSLKKASNVKDMCEALYKLLDHADAADRLERWSREDSASGRTQRAR 544

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                +    +  L  +++E           +  ++   ++   +           I    
Sbjct: 545  S-HRQLWDGVMQLLDQLVEMVGDEDMPPELFAGMVETGLENLKLAAVPPALDQALIGSMD 603

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDF 688
             +R  +     + G N+GV P    ++  L+   +  L            + +       
Sbjct: 604  RTRSGDVKICYVLGANDGVMPMRIQEDGVLTEQERERLAEEGLVMAPGVRRRLLDERFLI 663

Query: 689  EMAN--GTRHLIYTRSLRENNIPTI-ASRWLQRLLVL--------GGTDFFDNLKKRGQ- 736
              A    ++HL  + +  +    T+  S  ++++  L           +    ++   Q 
Sbjct: 664  YNALTTASQHLWISWAQADEEGKTLLPSEVIRQVRQLFPGIPVYQKAGEPTPGMETGDQR 723

Query: 737  -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------------- 770
                         +             PF                               
Sbjct: 724  SYIEHPQRTLAYLITELRAWRQGSEIAPFWWDVYNWFAIRPEWQDKLQLMNASLSFSNQE 783

Query: 771  ------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                              S S +++ ++ P+  +A   L+L          +  D G LF
Sbjct: 784  TVLTTTTAEQLYGTKLKASVSRMERFVSCPFQHFAIHGLRLRERQM--YRLEAPDVGQLF 841

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP--------PHIDIIWRHLFHKIS 864
            H  ++ L      +        +++      ++                        +I 
Sbjct: 842  HAALSRLAGGVGQRWGSMPEAQIREAAAKAVDELAPRLQSQILLSSGRFQYIARKLKEIV 901

Query: 865  --HSFLEHEEKIQSSIEKIFVNIPA-------KMAIE---SIGIHLTGFADRIDLLKSGF 912
               + +  E   ++  + + + +          + I       + + G  DR+D  ++  
Sbjct: 902  AQAAVILSEHSRRAQFQPVGLEVDFGPDGTLPSLVIPLDNGGTMEIIGRIDRVDAAETEE 961

Query: 913  ---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRL 965
               + + DYK+     K E     +  Q+      L   +   +      A + Y  +
Sbjct: 962  GLLLRVLDYKSSATQLKLEEVAFGLSLQMLTYLDVLVTHASEWLGKPASPAGVLYFHV 1019


>gi|300771530|ref|ZP_07081405.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
            33861]
 gi|300761519|gb|EFK58340.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
            33861]
          Length = 979

 Score =  214 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 134/1104 (12%), Positives = 317/1104 (28%), Gaps = 220/1104 (19%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
            PF +E+   L+                 L    I    KR    L     EI   K    
Sbjct: 3    PFLKEVAEDLVAKFG-----------DHLQDCAIIFNNKRPATYLNQYLSEIYQ-KPFWS 50

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
            P + ++ +   +    ++   Y          +   L  L      K      ++    P
Sbjct: 51   PSVFTIQEFFAQSTNLNIADFY---------TQFFTLFNLYNELLIKESGKQIEMDKFFP 101

Query: 136  -----LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                 LS           A  L   ++ I    ++++ L   +++    +W         
Sbjct: 102  VAKTILSDFGQIDMDNVEADRLFKELEDIAVINQQFDFLTEEQHQFLSRFW--------- 152

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA-----GSTGSIPATARL 245
                         + +   ++                  +        G T       +L
Sbjct: 153  ------------TSYTEGKHKRQQENFIRMWRRMPLLYRLFHDALKAKGLTTMGQIYRQL 200

Query: 246  MSTVANHPN-------GAIVLPGLDCHIPTAI-----WNTITEKSTNITSSNTTYSTHPQ 293
                 ++P        G I+L G +    T       W    +      + +        
Sbjct: 201  AHQTCSNPQFVNNFDKGRIILVGFNALSQTEAIIFKRWQDQGKTLFYFDTDS-------- 252

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            Y L   L    +       L  + NE+  +  +I++   P                    
Sbjct: 253  YYLNDPLHEAGLFLRKNIDLYGLKNELNNQRSLINELTTPT------------------- 293

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITADRNLARRVKLELTR 408
                   + +   +  +A  +   L    ++ K+      + ++ AD +L       +  
Sbjct: 294  ------TVYKVQGQTTQAKILNQVLSEDYEQLKQDPSYGQTVIVLADESLLLPTLQTIPS 347

Query: 409  FGINI----DISAGIPLSTTLHSSILTSL----LNAIFKL------NDFMAIATLVKHPL 454
               +I    +++ G+  +++    +        ++ +           +  +   + HPL
Sbjct: 348  DEQSIQVNLNVTMGLGYTSSSLFGLADLWLSHQVDMMNTRSAEELNVPYRTVEKFLTHPL 407

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                  ++    A    E + +   +       +      ++    +             
Sbjct: 408  IAVDEKKRTQVLAAFVKEQLVVIPLERLVQQKGIFQFFFQKVTDPLS------------- 454

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                    L   +   +  L      + +       ++    T+  L  +     + +  
Sbjct: 455  --------LTRELKSLLEYLAKRHLEQQNLRQLD--AELFVKTIQELNRMHDTLAQHIQT 504

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                                 S           +I + ++  +V    +  S L ++G L
Sbjct: 505  ---------------------SGNNFAPRFAAALIRKALEAISVPLSGDPLSGLQVMGLL 543

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA-NG 693
            E+R LNFD +++ GLN+G+ P+N+  N F+   ++    L   E     +A+ F      
Sbjct: 544  ETRNLNFDHVVILGLNDGIIPQNSVGNSFIPDSLRRAYGLPVLENQDAISAYIFYRLVQR 603

Query: 694  TRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             + L +   SL + +     SR+L++L      +F    + + Q                
Sbjct: 604  AKKLSFVYNSLTDESNTGEPSRFLKQLEFESNFEF----RYQDQHLQIKVEDQQELVIPK 659

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                        +  RT S S +   I +P   + + + ++       +  +  + GT+ 
Sbjct: 660  TTAIMDKLGLYLSGERTLSASALTTYIANPIDFFYKYVAEISEPEEVNEVVEANNLGTIL 719

Query: 813  HNIITELIKKRINKNT-------PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
            H  + +   +   ++         +    + ++I+ +F KE  P +   I      ++  
Sbjct: 720  HGTMEDFYNQLKAESNFISPERIAQKRKELSKLIEHNFIKEFYPENTKKIHFTGIQRVIM 779

Query: 866  SFLEH-------EEKIQSSIEKIFVNIPAKMAIESIG-------IHLTGFADRIDLLKSG 911
            + ++         ++  +    + +     +  E          IH+ G  DR+D+ + G
Sbjct: 780  AIVKEYIHIILDHDERAAPFTILQMEEEMTVPFEFNDSNGRKQVIHMKGIIDRVDIGQDG 839

Query: 912  FVDITDYKTGDNP-KKETAQKLID----------PQLSLEAAALKAGSFSQIDCRKVANL 960
               I DYKTG +    ++ ++  +           Q        +      I   +    
Sbjct: 840  VTRIVDYKTGSDELDYKSLEEAFNTDGKKLNKALVQTLFYTYVFEKA--KNIKNVEPN-- 895

Query: 961  FYI--RLKQKF----------KIDCITNDKKKYSADELSEKSLKNLIEIVT----LLQNG 1004
             Y+  ++K                       +  + +   +  +    ++      L + 
Sbjct: 896  LYVVRKMKNGGTLFQTKVEFTDDKNKVKKADQDLSGDFLAEEKERFAHLLASKLQELFDP 955

Query: 1005 EQPFISHLRLSEKSNIQSEYDHLA 1028
            + PF   +    ++ I S Y  L 
Sbjct: 956  QVPF--RVSQHSENYIFSPYKSLM 977


>gi|319650047|ref|ZP_08004196.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. 2_A_57_CT2]
 gi|317398228|gb|EFV78917.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. 2_A_57_CT2]
          Length = 1168

 Score =  214 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 117/967 (12%), Positives = 263/967 (27%), Gaps = 145/967 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM------WWLLAADFLK 189
            L L    A+     + +  ++   +      ++L   + ++                 L+
Sbjct: 107  LKLFQRAADKNGFIQQIEQMMTEFKRYCVAPDELAE-RQQQLSGTGKSNKALQDKLHDLE 165

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            +  K + E L      +       L+  +A H        + I G     P    ++  +
Sbjct: 166  LIYKNFEESLA--GKYTDSEDYFRLLAEKASHSEYLKNAEVYIDGFYSFTPQEYSIVEQL 223

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                    +   LD     +    +        +  T              + L I+   
Sbjct: 224  MKQCKNVTITLTLDKQFKHSATEELHLFRMAGENYQTIKE-------MASRNRLGIE--- 273

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                           MVI++       S        +++        +D+ + +A N R 
Sbjct: 274  --------------EMVITEQKRWCSPSLRHLEAHFDSRPAEAFLGEADIHIGQAVNRRA 319

Query: 370  EAISIAIALRMSLDENK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTL 425
            E   +A  +   +  +    +  A++  + ++    ++     + I   I     +    
Sbjct: 320  EIEGVARKINKLVRTDGYRYRDIAVLARNGQDYHDMIETVFHDYEIPFFIDQKRTMLNHP 379

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNSYD 484
               ++ S L  I     +  I   VK  L          L    + LE   L        
Sbjct: 380  LVELIRSTLEIINGNWRYEPIFRAVKTELIFPSKLNAGKLREQMDRLENYVLAYGIQGDK 439

Query: 485  IMDLKSLVLDRIATQK-NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
                K  +  RI   +         + R+ +E  +L  ++   IL+    L      +  
Sbjct: 440  WTKKKRWIYRRIRGLEFEAVAQTDSEKRIEDELSDLREMITGPILRLHRRLKKAADGRGY 499

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLP--NLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                    +   + V   +    +E +     +    +    +  L  + +E     +  
Sbjct: 500  CEALFLYLEELDVPVKIEKWKSAEEEKGNLVKSREHGQAWNAIMELLDQYVEMLGEEEVT 559

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
               +  ++   ++             +       SRL +     + GLNEGV P   +++
Sbjct: 560  LKRFASVLDAGLESLRFTLVPPAIDQVMAADLERSRLTDIKAAFVIGLNEGVIPAKFSED 619

Query: 662  PFLSRVMQSDLN------------LKTAEKYIGQAAHDFEMANGTRHLIYTRS-LRENNI 708
              L+   +  LN                E++I   A        +  L  +     E   
Sbjct: 620  GVLADDDREILNTNGMKLAPGSRTRLLDEEFIAYKAF----VTPSEKLFISYPLANEEGK 675

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCY-----LDWTRKLDYTTKQ------------ 751
              + S +++RL  L       +             L++   L+                 
Sbjct: 676  ALMPSPYIKRLGDLFPDCRQHSFMSDPAELPETEQLEYADNLNTALSYLTSQLQLKKRSY 735

Query: 752  ----------------PHYKRPKPF-------------------PPLEAQPRTYSFSEIK 776
                              ++RP                        L       S S ++
Sbjct: 736  PIYDLWWDVYNCYLNNEQWRRPALKVLSSLNYENRTLQLGADISKELYGDHIQASVSRME 795

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK---NTPEINH 833
               + P++ +A+  L+L          +  D G LFH  +  + +  + +    T     
Sbjct: 796  LFHSCPFSHFAQHGLRLRERQ--VYRLEAPDIGDLFHAALKFIAETVMTQKLSWTDMTRE 853

Query: 834  LMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFV 883
              + +     E              +     +    +I     ++  E    S    + +
Sbjct: 854  QCEILAKEAVEMLAPKLQNEILLSSNRHHYIKRKLEQIISRASYVISEHAKSSGFSPVGL 913

Query: 884  NIPA--KMAIESIGIHLT--------GFADRIDLLKS--GF-VDITDYKTGDNP-KKETA 929
             +    K  + S+   L         G  DR+D  +   G  + + DYK+          
Sbjct: 914  ELGFGPKGELPSLVFPLKNGTKMELVGRIDRVDKAQDTNGTFLRVIDYKSSSKDLNVSEV 973

Query: 930  QKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
               I  Q+       +   +         A + Y  +      + I +  K  + +++ +
Sbjct: 974  YYGIALQMLTYLDIIIAHSNSLIGTEADPAGVLYFHV-----HNPIVSTSKMLTLEDIEQ 1028

Query: 989  KSLKNLI 995
            +  K   
Sbjct: 1029 ELYKKFK 1035


>gi|157825678|ref|YP_001493398.1| hypothetical protein A1C_03000 [Rickettsia akari str. Hartford]
 gi|157799636|gb|ABV74890.1| hypothetical protein A1C_03000 [Rickettsia akari str. Hartford]
          Length = 888

 Score =  214 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 135/727 (18%), Positives = 254/727 (34%), Gaps = 91/727 (12%)

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
            P  ++    ++  E ++  EEA  IA           K+ A+IT +  L R     L R+
Sbjct: 204  PASKRISDCISYYEPNDIYEEAQQIAYI---CSRNKDKRIAIITNNNKLKRVYCNFLDRY 260

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRA 467
               +    G  L  T    +LTS++  +    D   +  L+K+PL         +   + 
Sbjct: 261  EDLL----GNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLISNPTQLNSENFRQN 316

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
            +   +      +    D +    L+L       ++          +E+ KE    L+D +
Sbjct: 317  EFKSKSAERTISSFVNDAVQKLELMLSNKNRFISSPQYLLQLQFDNEDTKEYCRNLIDIL 376

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                            +    +I D   LT    + +        P +W +E G  L+  
Sbjct: 377  F---------------SDNPHNILDILTLTKEIAEKLL-------PTIWEKEGGAELAEF 414

Query: 588  FSKIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
             + +          +  ++  I + L+       K   S+++ I    +  L  FD +IL
Sbjct: 415  LTNLTAYSKYINSTDKKDFPKIFSFLLSNIKYY-KNTDSTSITIGAPEDLALCAFDFIIL 473

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
               N   W      +P+LS      LN+   E      +  F +    + +I   + + +
Sbjct: 474  PHFNNENWTPTAKAHPWLSNKALQILNIDYNEITPTLYSDYFNLFLQNKQVIILNAKKYD 533

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
               ++ S     L           +       LD        T        +P     + 
Sbjct: 534  GKLSVPSNLFLMLQN------VIPIPYYVIPRLDRGSHKIIDTVIKPRYDNRPTAQSTSF 587

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----K 822
            P   S ++I+ LI +PY  YA++IL L    +  ++P  +D G   H ++ E  K    +
Sbjct: 588  PSVLSVTDIETLIRNPYGFYAKKILGLRPKDNIWEEPKISDFGNFIHKVLEEYSKNYDKQ 647

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
             +N N  +    +  I +       LP +    W+      S +F+  + + + + ++I+
Sbjct: 648  YVNLNLLDKQAALINIGNHILYGTILPTYTKKTWQIKLTAFSKAFILFDIERRKNCKEIY 707

Query: 883  VNIPAKMA--IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
                 ++   I    I + G ADRI++ KS  + I DYKTG  P K++ +  + PQL +E
Sbjct: 708  FETNGELRLNIAGQDIKIIGIADRIEISKSNNITIMDYKTGTIPTKKSIELGLSPQLIIE 767

Query: 941  AAALKAGSFSQID--------------------------CRKVANL------------FY 962
            +  L    F   D                            +V+N              Y
Sbjct: 768  SLMLLENGFITFDVTPWLDHGVHKKIKKDWIPRSSREMMEVEVSNATRPNNGNPEISIAY 827

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022
            +++      +      +   + E   K    LI ++       + F   L LS+     +
Sbjct: 828  VKITS---TEPYVQTMEIALSIETLNKHKAGLIRLLEYYVT-NKSFSYDLNLSK----YN 879

Query: 1023 EYDHLAR 1029
            +Y HL R
Sbjct: 880  DYLHLIR 886



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 44/218 (20%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F +     +++                   V I +P   +  EL     +    K   LP
Sbjct: 7   FLKSFAEYIIDKLAKG------------TEVQIILPNNCSCLELTKILADQYNIK---LP 51

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
            I     ++ ++  +D          VS I+ LL ++++I  +++   +  + L      
Sbjct: 52  SIIPFNSLMSKQTDSDY---------VSKIEELLIISKIITEYKDLQCNKHESLKA---- 98

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                       AK L  + + +         +  ++      +W     FL+     W 
Sbjct: 99  ------------AKILRKLFNDLIINNID---IKLIEIYNNSNYWQKIYKFLEYCFLRWQ 143

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234
           E +      +   Y++ L+ AE   +       II+AG
Sbjct: 144 EEISFTQKQTKASYKLKLLHAEIIRIKN-RNKQIILAG 180


>gi|226314560|ref|YP_002774456.1| ATP-dependent nuclease subunit B [Brevibacillus brevis NBRC 100599]
 gi|226097510|dbj|BAH45952.1| ATP-dependent nuclease subunit B [Brevibacillus brevis NBRC 100599]
          Length = 1165

 Score =  214 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 139/1052 (13%), Positives = 296/1052 (28%), Gaps = 156/1052 (14%)

Query: 53   TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
             ++    LR         K    P+I  + +    +    L     L   +    ++L  
Sbjct: 19   HRQMQARLRE--------KPLGSPMILLVPEQASFQEEYALATLPELGGVIG--TQVLSF 68

Query: 113  ARLILIWRNKLPD----IIKDLYPESPLSLPIS-----------PANAIWLAKNLADIID 157
             RL      +L D     + DL     L + +             A     A  L  +I 
Sbjct: 69   GRLAHRLMQELGDLTTVPVDDLGKHMVLRMLLERHKEELNVFGRSATQPGFAAQLGRLIS 128

Query: 158  IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217
              ++    +   H+   E  G         L++    +   L E            +   
Sbjct: 129  ECKSYGVSFT--HSENVEWGGANLNQKIHDLRLIMNAYEAYLSE-GYCDADDILNRVATM 185

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
              + +    +  I I G TG      RL+  +  H     +   LD +   A  + +   
Sbjct: 186  VRDSMYI-KQAEIFIDGFTGFTNQELRLIEQLMQHAKQVTIALTLDPNERDASVDELGLF 244

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                         HP     + L  +  +         +   +       S  +L     
Sbjct: 245  -------------HPTLRTYQALTLMARESGVSIAKPLL---LTEAQRFKSSPWLRQVEQ 288

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSALIT 393
                    +  IP+      +V ++ A N R E  ++A+ L    R      K  + L+ 
Sbjct: 289  VYFQW--GDPPIPDQPGRADEVTMLSAVNRRAEVEAVALKLLTLSREEGYRWKDMAILLR 346

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                 A  +    T +GI   +     +       ++ S L  I     + A+   +K  
Sbjct: 347  EIGTYADEISAVFTEYGIPHFLDQKRSVMHHPLVELVRSALEVIVTRWRYDAVFRCLKTD 406

Query: 454  LAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
            L       E    +  + LE   L      Y   +         A  + +  +   + + 
Sbjct: 407  LLLLDITDEHTARKEIDRLENYVLAHGVFGYQWAEESPWHFRGQAGAEEDAQIDELRRKY 466

Query: 513  SEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            +         +       +  + +       +      +  W        Q    ++   
Sbjct: 467  AAPLLSFEKEMKQATGLNVQEMTLALYNLLIALDVPNKLEHW--------QRKAENDGDL 518

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                   +    L  L  +++E       N   +  ++   ++   +         + I 
Sbjct: 519  DAAQVHGQVWTGLIELMDQVVEVMGDESMNLATFARVLDSGLETIELGLVPPALDQVLIG 578

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAA 685
                SR  +   L L G+NEG+ P    +   L    +  L         +A++ +    
Sbjct: 579  AMERSRQPDVKALFLLGVNEGIIPLRPKEEGILDEAERERLAEMGMSLAPSAKQKLMAEP 638

Query: 686  HDFEMANGTR--HLIYTRSLRE-NNIPTIASRWLQRLLVLGGTDF--------------- 727
            +    A       LI + +L +      + S    R+  +                    
Sbjct: 639  YLLYQAMTRPSERLILSCALADEEGKALLPSSVFTRIREVLPDIPHQVFYNEPTGQYETD 698

Query: 728  ---FDNLKKRGQCYLDWTRKLDYTTKQP--------HYKRPKPFPPLEAQ---------- 766
                 + ++  +  L   R +  T + P         Y R  P    E            
Sbjct: 699  AFLLGHPRRVFRHLLTLLRSMKKTGELPDFWWEVYDWYIRASPDVKREQWLLSGLRYFNR 758

Query: 767  ---------------PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                               S S +++  + P++ ++   L+L          +R D G L
Sbjct: 759  PQELDLETSTTLYGKQLKMSVSRLERFQSCPFSHFSSHGLRLAER--TMYKLERFDVGEL 816

Query: 812  FHNIITELIKKRINKNT------PEINHLMKQIIDSHFEKENLPPHIDIIWRHL-----F 860
            FH  +   ++K    N        + +  +  ++            +    R+       
Sbjct: 817  FHASLKRAVEKMNEDNLEWSKLTEDNSMQLANVVVEELVPATRSSILTRTARYRYLSGKL 876

Query: 861  HKISHS--FLEHEEKIQSSIEKIFVNIPAK---------MAIESI-GIHLTGFADRIDLL 908
             +      ++  E   +S    + + +            + +E+   + L G  DR+D  
Sbjct: 877  KRAVGRAIYVLGEHAKRSRFAPVGLEVSFGPNSDLPGLALTLENGVELQLIGRIDRVDQS 936

Query: 909  KSGF---VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYI 963
                   + + DYK+             ++ QL +    + A +   +    ++  +FY 
Sbjct: 937  LDSEVPYLRVIDYKSSPKQLSLSDVWNGLNLQLLVYLDVVVANAEEWLGKKAEMGGVFYY 996

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            ++      D     K+  +ADE +++  K L 
Sbjct: 997  QVA-----DPFVTAKRLLTADEAAKERAKRLR 1023


>gi|291549062|emb|CBL25324.1| ATP-dependent nuclease subunit B [Ruminococcus torques L2-14]
          Length = 1146

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 123/932 (13%), Positives = 258/932 (27%), Gaps = 141/932 (15%)

Query: 151  NLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKYWTERLVELNASSPVG 209
             +  +I         +E L +         +       ++   + + + L +   +    
Sbjct: 144  EVKSVISEFTQYGIDFEQLDSFMEGLNPESYLYYKLKDIRKVYEGFEDYLRDKYIT--KE 201

Query: 210  YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
              + ++              I + G TG  P   RL+  +    +  ++   +D      
Sbjct: 202  ELLDVLSQAVPEAKMLKDSVIAMDGFTGFTPVQNRLIGELLKVCDKIMLTVEIDRREDPF 261

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS-NEMYGRSMVIS 328
            ++                   HP Y L  L   +     +V +   V  +E        S
Sbjct: 262  VYK------------------HP-YQLFALSKQMVTSLTEVAQEVRVEIDEPVWLCKNPS 302

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQ-KCFSDVALIEADNEREEAISIAIALRMSLDENK- 386
              F           ++          +    ++L E    +EEA  +A  +R  + E   
Sbjct: 303  YRFKENPEMAFLEEELFRYSRRKYSGEKMRSISLHEVHTPQEEAQYVAEEIRRLVREEGY 362

Query: 387  --KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
              ++ A+I +D +           R+ I + +     +        L SLL  + +   +
Sbjct: 363  RYREIAVIASDLSTYADALEKACDRYEIPVFMDHKKSILLNSFVEYLRSLLVMVEQNYTY 422

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
             ++   ++  L  F   E                      D+   K      +      T
Sbjct: 423  ESVFRYLRTSLCGFTRDEVDRLENYCLAL-----------DLKGFKKWDQVWVRKTPMTT 471

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-------DWTKL 556
                      +E+ E    L    ++ +TPL T    +  T   ++++       +  + 
Sbjct: 472  ----------KEELEELNHLRMRFVEKLTPLHTVLKKRKKTVKEITLAVYEYLVQEKIQE 521

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
             +  L+    ++        + +  + +  LF K +E     +    E+ +++   ++  
Sbjct: 522  QLAELEQKFQEDGELALAKEYAQIYRIVLELFDKFVELLGEEEIPLKEYCELLDAGLEEA 581

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673
             V         + I     +R+ N   L   G N+ + P N      LS   +       
Sbjct: 582  KVGVIPPSLDQVVIGDMERTRIKNIRALFFVGANDTLLPGNAGARGLLSERDRKQFQEKK 641

Query: 674  ---LKTAEKYIGQAAHDFEMANGTRH--LIYTRSL-RENNIPTIASRWLQRLLVL----- 722
                   ++ +        M        L  + +           +  +Q L+ L     
Sbjct: 642  MNLSPGPKEKLYIQKFYLYMNLTKPSELLYLSWAKVSGEGKALRPAYLIQDLMRLFPVLV 701

Query: 723  ----GGTDFFDNLKKRGQCYLDWTRKLDYTT----------------------------- 749
                      D+   R    L     L                                 
Sbjct: 702  PVEEDRKGLLDHEMMRKSGLLQIAEGLREREHGLDDSWKELYRWFVKDEQSQETLKQMIE 761

Query: 750  -----KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                 K       +    L   P+  S + +++  +  YA +    L+L      K   +
Sbjct: 762  AGFYRKDEPSLGSRVAKELFLDPKRVSVTRLERFASCAYAHFLNYGLRLSERE--KYGFE 819

Query: 805  RTDRGTLFHNIITELIKKRINKNTPE---INHLMKQIIDSHFEKENLP--------PHID 853
              D G + H  +     K   +            +++ID   E+  L            +
Sbjct: 820  AMDLGNIAHQALERFAHKVEEEGLDWVTMPEEKRERLIDESVEESILDYGNTVLFSSARN 879

Query: 854  IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
                H   ++ +   +   ++                          +G  DRID  +  
Sbjct: 880  EYMIHRIKQLINRSVWALTQQMAAGDFVPSGCEFKFG----------SGKIDRIDTCEDE 929

Query: 912  FVD---ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRL 965
                  +TDYKTG            +  QL +   A       +   ++V  A +FY R+
Sbjct: 930  NAVYVKVTDYKTGRKAFDITAFYHGLQMQLPVYLNAALEIERQKNPEKEVLPAGIFYYRI 989

Query: 966  KQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
            +        T  + + S   L E  L  LI  
Sbjct: 990  QDPIVKKEETKAEVEQSI--LKELKLDGLINA 1019


>gi|300783059|ref|YP_003763350.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
 gi|299792573|gb|ADJ42948.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
          Length = 1057

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 132/1044 (12%), Positives = 261/1044 (25%), Gaps = 127/1044 (12%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG---------KKST 73
             ALL          +  +P     V +   ++++   LR++                ++ 
Sbjct: 39   TALLASAATRRIA-EGADPES---VLVLTTSRKSADALRADITRRLTADPEQARPLPRTV 94

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE 133
              P+++++          + +      P      RLL  A   ++ R  L   + +    
Sbjct: 95   REPLVRTVHSYAYSLLRLEAMAEELPPP------RLLAGAEQDVVVRELLAGDLDEEAEY 148

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193
             P  L  +       A+ L D++           DL  L   +    W+ A  F     +
Sbjct: 149  WPEQLRPALL-VPGFAEELRDLLMRAAERGLGPGDLAELGRRRGREEWIAAGQFWAQYEE 207

Query: 194  YWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
                +    NA                           +  S          +       
Sbjct: 208  VTQLQGAGGNALGVA--------------SAPALDAAELVTSALLALEDDDELRERERTR 253

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
               + +       P           T              +S       L    +     
Sbjct: 254  VRHLFVDDAHHLDPLQTSLVRMIGHTAAEFVVAGDPDQNVFSFRGADARLFADADPDGSR 313

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
                   +  +  +  +      + +         +P        V +        EA  
Sbjct: 314  TVTLTTAHRLAPAVRLAVAKIGAT-LPGASPHRKIVPPAGASGGTVRVRVMPTPAAEASW 372

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG-----IPLSTTLHSS 428
            IA  LR +   +    + I        R  L L R      +  G     +PL+      
Sbjct: 373  IADQLRRAHLVDGVPWSEIAVLVRSPARTFLVLQRALRAAGVPIGSATEELPLAKQPAVR 432

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
             L ++L               +    A  G     L R +  L  + L G          
Sbjct: 433  PLLAVLKLAPSPELLDIDLAEMLLSSALGGADPLALRRLRRGLRRLELAGGGQRSS---- 488

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                                 + L++ + E    +   +      +   +  +       
Sbjct: 489  -------DELLVEALRGGDILAGLADAEAEPVRRVGGLLRVTHQAVARGEGVEQVLWQLW 541

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
              S      +   +       +   +L         +  +   +   S     A     +
Sbjct: 542  RESGLQDKLLKQAERGGSLGAQADRDLDAVVALFDAAGRYVDRLPRSSV----ASFADYL 597

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
              + I G+T+ P    S  + +L    +    +  + + G+ EG WP    +   L    
Sbjct: 598  GAQRIAGDTLAPAAVPSDGVSLLTAHAAAGREWTVVAVAGVQEGAWPDLRLRGSVLGVER 657

Query: 669  QSDLNLKTAEKYIGQAA--------HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
              DL     +  + Q A          +   +  +  +   ++   +     SR+L  L 
Sbjct: 658  LKDLMAGVDDDAVSQTAPILAEERRLFYLAMSRAKQTLLVTAVSGEDE--QPSRFLDDLE 715

Query: 721  VLGGTDFFDN----LKKRGQCYLDWTRKLDYTTKQP------------------------ 752
              G  D   +       R     +   +L                               
Sbjct: 716  ENGADDGGLDSRMKPPGRSLVLAELVGELREVVCDDKADPARRRRAAKQLARLAEARVPG 775

Query: 753  ----------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
                           +P  P        S S ++ L   P      R    D        
Sbjct: 776  AHPSTWYGLLPASSDEPVHPPGD-LIRISPSTVEILTKCPLRWMIERHGGSDPAQ----- 829

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                  GTL H     L +   + +T               +            R    +
Sbjct: 830  -LAAVTGTLVHG----LAQAVASGSTDAELQAALDEAWVRVDAGAPW--FSRRERRRVEQ 882

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFADRIDLLKSGFVDITD 917
            +  +F    E+ +  +++  V    ++ + +       + L G  DR++L   G   I D
Sbjct: 883  MLRNFTTWLEQSRKELKEAGVEQDIEVELPAGSEDEVRVLLRGRVDRVELDAEGRPVIVD 942

Query: 918  YKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
             KTG  P     A+    PQL+    A+  G+         A L Y+    K        
Sbjct: 943  IKTGKVPVSGAEAEAH--PQLAAYQLAVLLGAIEGRTEAGGARLVYV---AKANNKTGAT 997

Query: 977  DKKKYSADELSEKSLKNLIEIVTL 1000
            ++ +   DE+  K    L++    
Sbjct: 998  ERSQPPLDEVGGKQWLELVQKAAA 1021


>gi|17545908|ref|NP_519310.1| hypothetical protein RSc1189 [Ralstonia solanacearum GMI1000]
 gi|17428203|emb|CAD14891.1| probable homologous recombinational repair protein [Ralstonia
           solanacearum GMI1000]
          Length = 962

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 151/962 (15%), Positives = 284/962 (29%), Gaps = 107/962 (11%)

Query: 10  TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEI 67
             AP   F      A           +D        +  + VPT   I  +R        
Sbjct: 5   AFAPGPAFLPHAADA-------AWRFFDAHATDAPGAGVVVVPTAAQIPGVRGALHASAQ 57

Query: 68  TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI--LIWRNKLPD 125
                 +LP I +LG      +  DL     L    S + RLL + + +    W  +   
Sbjct: 58  AAGALRLLPRILTLG-----HWLLDLPPEAGLPAARSTLSRLLAVQQALKTQAWLREALG 112

Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
              +        + ++ ++ +       D  D  ET+ +      AL       +  L+ 
Sbjct: 113 AQDEAALWGVAQVLVTVSDELSQRWLTLDAADS-ETDGRHDALETALSAALERTYAQLSE 171

Query: 186 DFL----KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
            FL    +I   +W        AS P+  ++  MR   + L     GP++    T    A
Sbjct: 172 RFLGTESRIVLTFWRLL---SGASDPIPVRLRAMRRLLDALR----GPVVWMSPTDPEGA 224

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
               ++  A       +                  ++          +TH  +    L  
Sbjct: 225 DLDFLTRAAGRVPVLRI--------------GYDWQAREPVPEAAAPATHGAFRTLLL-- 268

Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                                     +++  P                         + +
Sbjct: 269 ---------HAWPECGTVAPQAVEASAEAERP----------------------PPGLRI 297

Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
             A    +EA   A  L   L+  ++  AL+  DR +ARRV+  L R  + +    G  L
Sbjct: 298 ASAARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKL 357

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
           STT  ++ L   ++ +    D  A+  L+K P                  EL       N
Sbjct: 358 STTRAAAALMRWIDVVQGDGDTAALLDLLKSPFCLRDAEAPSSVAPAWVAELERRVRRHN 417

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                                             D   A  L + +      L+  +  +
Sbjct: 418 VSGGWG------RLRRLVALRGTDTDVAEAADTGDGPPAGRLAERL-----GLLADEAAQ 466

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
               G+ ++  W  L    L  + +    +  +   +          S      +  + +
Sbjct: 467 WRRAGHATLEAWVTLLAGTLDRLRMRAGLQNDDAGRQLLDWLDRLRVSVHGSADAGARFS 526

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
             EW  +++ L++          +   + IL    +R+  FD +++ G ++   P    +
Sbjct: 527 LQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPE 586

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQR 718
             F S  ++ +L L    +   Q A D   +      ++ T         P   S WL+R
Sbjct: 587 WLFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPNRLSGWLER 646

Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
           L           ++      L   +     T  P    P   P       T S +    L
Sbjct: 647 LQRRLAAA---GMRIDVPVVLPALQTARQPTDMPAPAAPVLVP------STLSAAAYNSL 697

Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLM 835
              PY  +  R+L+L  +     + ++ D G + H I+    ++ ++    +  +   L+
Sbjct: 698 RRCPYQFFVGRMLRLGELEEVSDELEKRDIGEVLHAILHRFHRQLLDTPMADPADRLALL 757

Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAIESI 894
           + + D  F          + +   +  +  S+L  +   ++         + A  +I   
Sbjct: 758 QALTDERFAPLLAEDGHALRFYRRWQGVMASYLAWQAAREADGWRFEAGEVDADASIALP 817

Query: 895 G---IHLTGFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLI-DPQLSLEAAALKAGSF 949
           G   + L G  DRID      V + DYKT          +    D QL            
Sbjct: 818 GAQALRLRGRIDRIDTHPEHGVAVLDYKTQSPIALARKVKAPFEDCQLPFYGLLDARAGA 877

Query: 950 SQ 951
             
Sbjct: 878 GG 879


>gi|289769236|ref|ZP_06528614.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
 gi|289699435|gb|EFD66864.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 1165

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 132/1087 (12%), Positives = 271/1087 (24%), Gaps = 153/1087 (14%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE+             + +   +++A  ELR       G  +   P   +        
Sbjct: 66   TLVESVADRIARGGDPERILVLTFSRKAAVELRDRMALRIG--AARAPRATTFHSFGYAL 123

Query: 89   FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A  D  L       +S  ++ + +  L+    +        L          +     
Sbjct: 124  VRAHQDSDLFVEPLRLLSGPEQDVTVRELLAGQVDLER---LGLAHVRWPDELRACLTTR 180

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++          + L A         W  AA FL         + V   A  
Sbjct: 181  GFADEVRAVLARSRELGLGPDALAAFARRIGRPDWRAAAVFLAEYLDVLDLQGVLDYAEL 240

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 +   R E    +      + +     + PA  RL+  +A+   G  ++   D   
Sbjct: 241  VHRAVLLARRPEVAAHLTAQYDAVYVDEYQDTDPAQVRLLHALAD--GGRTLVAFGDPDQ 298

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +            +    +          +  L   R     L   +  +  R   
Sbjct: 299  SIYAFRGADVNGILDFPTAFPRAD----GRPAPVGVLRTARRSGSGLLAATRLLTQR--- 351

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
                      + +    +  ++     +    V          E  +IA  LR +  E  
Sbjct: 352  -------MPLTRLPADKVRAHRELTPVRGGGRVEAYTYPTAGTELDNIADILRRAHLEDG 404

Query: 385  --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441
               +  + L+ A       ++  LT  G+ +DI     PL      + L + L A+ +  
Sbjct: 405  VPWRDMAVLVRAGSRTIPTLRRALTSAGVPLDIDGDDLPLRHEPAVAPLLTALRAVAEAE 464

Query: 442  DFMAIATLVKHPLAK----------------------------------FGFPEKYLSRA 467
                  T  +                                           E   +  
Sbjct: 465  ADTGARTGERPGAVGSEADADPRADADAGGDPEIDPDADPDIDPDADADAYVDEGGDAAT 524

Query: 468  KNALELVALRGNKNSY------------DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
            K +    A R ++  +             +  + +  L R+     +             
Sbjct: 525  KPSRGEHAYRADEPCWLSTETALTLLTSPLAGMDAADLRRLGRALRDERRAAGNPLPPPS 584

Query: 516  DKELAVLLVD--------------------HILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            D+ LA  L +                     + +    L    + + +       + W  
Sbjct: 585  DELLAQALAEPERLAVHDPAYARGAQRLGALLRKARERLAGGGSAEEALWDLWDGTPWPT 644

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                  +           +L         ++      E  +  +       +I    I  
Sbjct: 645  RLERSARRGGAAGRNADRDLDAVCALFATAA----RAEERTGGRGALNFLEEIDAEDIAA 700

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
            +T+  +  +   + ++    S+ L +  +++ G+ EG+WP    +   L         L 
Sbjct: 701  DTLARRAVRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLA 760

Query: 676  TAEKYIGQAA----HDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
                     A      +  A   R  L+ T      +     SR+L  L V         
Sbjct: 761  EPLSPGALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGV--EPADVTG 818

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPK-----------------------PFPPLEAQP 767
              +R         +L  TT  P    P                        P        
Sbjct: 819  RPRRPLAVAALVAELRATTVDPRVSEPLREAAARRLARLAALTDEDGRPLVPSAHPYRWW 878

Query: 768  RTYSFSEIKQLINDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFH 813
              +  +E K  + D           L                +            G + H
Sbjct: 879  GMWDPTESKVPLRDRDQPVTLSGSALDQLANTCALQWFLGREVKADAPATTAQGFGNVVH 938

Query: 814  NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
             +  E+       +   +   +   + +    +                    FL+    
Sbjct: 939  VLADEVASGHTPADLAVLMERL-DSVWNALAFDAPWKSAQEKANARV--ALERFLKWHVM 995

Query: 874  IQSSIEKIFVNIPAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQ 930
             ++    +       + +E+    + + G  DR++    G   + D+KTG   P      
Sbjct: 996  DRAGRTPVASEHDFDVTLEAGEYEVRIRGQMDRVETDADGRAYVVDFKTGKQAPTSSEVA 1055

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
            +   PQL++   A++ G+  +       +      + L+Q            K  A E  
Sbjct: 1056 RH--PQLAVYQLAVREGAVDEAFDGVRPQPGGAELVHLRQGAPKRDGGETLPKVQAQESQ 1113

Query: 988  EKSLKNL 994
            E      
Sbjct: 1114 EGPEGEW 1120


>gi|229541420|ref|ZP_04430480.1| ATP-dependent nuclease subunit B [Bacillus coagulans 36D1]
 gi|229325840|gb|EEN91515.1| ATP-dependent nuclease subunit B [Bacillus coagulans 36D1]
          Length = 1167

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 138/1063 (12%), Positives = 307/1063 (28%), Gaps = 153/1063 (14%)

Query: 58   QELRSEFIEITGKKST--ILPIIKS------------LGDVVEEKFTADLLLSYNLNPPV 103
            +E+R + +   G      ++P   +            LG ++  +  +   L++ +   V
Sbjct: 20   REIRQKLLGDPGGAPLIYLVPEQMTFLSETRLAHDPELGGMIRAQVYSFTRLAWKILQEV 79

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
              I R    +  + +   K+ +  K+      LS+    A+      N+  I+   +   
Sbjct: 80   GGISRTHVSSSGLNMLIRKILEDQKEE-----LSVFTRAADKTGFIDNVERILTEFKRFC 134

Query: 164  KKWEDLHA----LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
                 L      ++              L+   + + ++L            + L+ +  
Sbjct: 135  VSPAQLQEKRASIEEADGERVLSDKLHDLECVYQAYEQKLE--GKYIDSEDYLRLLASAI 192

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
            E         I I G     P    ++  +        V    D       +  +     
Sbjct: 193  EKSRYLDDAEIYIDGFHTFNPQEYLVIGELLKKCRRVTVALTTDR-----AFRGMQPDDL 247

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
             +         H      +L     I+ E+   L         R    S  FL     ++
Sbjct: 248  YLFRMPGEAYAHI----YELARAFQIETEEDVALYE-----PVRFRHESLRFLQSRFEEL 298

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADR 396
                             S + + +A+N R E   +A ++R ++ E     +  AL+  + 
Sbjct: 299  PFPSFPGE---------SSIEIWQANNRRAEIEGVARSIREAVMEGSCRYRDIALLVRNG 349

Query: 397  NLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
               + +       + +   I    P+       ++ S L  I     +  +   +K  L 
Sbjct: 350  EAYQDLIETVFYDYDVPYFIDRKRPMLNHPLIELIRSTLEIIRGNWRYEPVFRAIKTELL 409

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                  + L    + LE   L            K     RI   +        + R  E+
Sbjct: 410  FPPGDTRMLREKMDRLENYCLAYGIQGERWTSRKRWEYRRIRGLELENLPQTDEERKIEQ 469

Query: 516  DKELAVLLVD----HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            +     LLV      + + +    T K    +    L   +  +                
Sbjct: 470  ELNELRLLVTAPILRLSRRLKRARTGKALCEALYLYLEELEIPEKLEALRLEKEEAGDLV 529

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                  ++    +  +  + +E      A+  ++  I+   ++             + + 
Sbjct: 530  AAR-EHDQAWDEVMGVLDQYVEILGDEPADVGKFSAIMETGLESLKFSIVPPALDQVLVA 588

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL------KTAEKYIGQAA 685
               +SRL +     + G+N+GV P   +++  L+   +  L L        +++ +    
Sbjct: 589  NLEQSRLSDVKLAFIIGVNDGVMPAKISEDGVLNDEEREYLRLTGLEIMPGSKRRLLDEE 648

Query: 686  HDFEMANGTR--HLIYTRSLREN-NIPTIASRWLQRLLVLGGT---------DFFDNLKK 733
              F  A  T    L+ +  L +      + S ++ R+  +                  K+
Sbjct: 649  FIFYRALTTPSEKLVLSFPLADEEGKALLPSPFINRIEDMFPARGGALWVNDPAELEEKQ 708

Query: 734  RGQCYLDWTRKLDYTTKQPHYKR---PKPFPPLEAQPRTY-------------------- 770
            +          + + T Q   K+   P      +                          
Sbjct: 709  QAAYISHPAAAIAFVTSQLQLKKRGYPMADFWWDTYNFYMEHPEWKNRAAHAFSSLFYQN 768

Query: 771  --------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                                S S ++Q    P++ ++   L+L     F+   D  + G 
Sbjct: 769  KARKLSEKTSRELYGDHILASVSRMEQFFTCPFSHFSTYGLRLRERDVFR--LDAPNIGD 826

Query: 811  LFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL- 859
            LFH  +  +            +   + + E+       +    + + L       +    
Sbjct: 827  LFHGALKWISDTLQREGIPWSEITKQQSMELAKAAVDDLAPKLQHQILLSSKRYQYIKRK 886

Query: 860  FHKISHS--FLEHEEKIQSSIEKIFVNIPAKM--AIESIGIHLT--------GFADRID- 906
              ++     ++      +S  E + + +       +  +   L         G  DR+D 
Sbjct: 887  LEQVVGRASYILSVHAKRSGFEPVAMELAFGPKKELPPLSFTLKNGAKMELQGRIDRVDK 946

Query: 907  -LLKSGF-VDITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFY 962
               ++G  V I DYK+  +          +D Q+       +        +    A + Y
Sbjct: 947  AESENGVYVRIIDYKSSAHKLDLTNVYYGLDLQMLTYLDLIMTYSKQLTGEETIPAGVLY 1006

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
              L      D + + +K  SA+E+ E+ LK+      LL + E
Sbjct: 1007 FHL-----HDPLISAEKMLSAEEIEEEILKDFRMRGLLLDSPE 1044


>gi|254785005|ref|YP_003072433.1| hypothetical protein TERTU_0822 [Teredinibacter turnerae T7901]
 gi|237686099|gb|ACR13363.1| conserved hypothetical protein [Teredinibacter turnerae T7901]
          Length = 909

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 126/895 (14%), Positives = 277/895 (30%), Gaps = 98/895 (10%)

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             + W + L     +    +  +      +         +I      S P T  L+++VA 
Sbjct: 60   YQGWLQDL-WQRLTLDGRHPRSAQVLMTQQQEMLLWETVI-----TSHPDTPPLLNSVAT 113

Query: 252  HPNGAIVLPGLDC-HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
              N       +    +P   + T     ++        + H Q     LL F ++     
Sbjct: 114  AKNAQDAWRLVCEWALPVDSFETDELLQSHQLFLAWVAAFHEQCQQRGLLTFSELSGVIC 173

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI----------PNIQKCFSDVA 360
              L +        +  +    +     D     +   +               +    V+
Sbjct: 174  DALTHSDPAAAVATWRLPNQIVMYGFDDQAPALLQLLEALTGCGCQLIHVAEPEPTPQVS 233

Query: 361  LIEADNEREEAISIAIALRMSLDENK-KKSALITADRNLARR--------------VKLE 405
            L    + + E  S+A     ++     ++  ++  D +  R               +   
Sbjct: 234  LCSFSDPQAELESVATWCYQAIAAQPVQQIGVVIPDLSARRAEVERHFNRVFDPHGILPT 293

Query: 406  LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
              +     ++SAG PL+           L       +    + L+  P            
Sbjct: 294  TPQHAPGFNMSAGQPLAQVPVMQAALQALQLNRARLELETASALLLSPFLGIQSE----- 348

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLV 524
                                +  ++L+  R+  Q   +         + E   +  + L 
Sbjct: 349  --------------------LAARALLDVRLREQGELSPSRQLLRTSAAEFCDDEGLPLC 388

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
            +H    +            +      S+W  + +  LQ +     R L  L +++  +  
Sbjct: 389  EHWYHALDDFDKLAKQYGPSA--RLPSEWLPVFMAQLQCLGWPGDRTLDTLEYQQV-QVW 445

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             +   +           A      + R +  +       + S + ILG+LE+  L FD L
Sbjct: 446  QTCLDEFAALDVVTAPMAWSEALSLLRRLLQQRSFQPQTRISPVQILGSLEAAGLPFDQL 505

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEM-ANGTRHLIYTR 701
             + GL++  WP   + NP L   +Q   N    +AE+    A +  +        + ++ 
Sbjct: 506  WVMGLDDEAWPPAPSPNPLLPLAVQVAHNTPQSSAEREFRYARNLTQRWLASASQVTFSY 565

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
            +   ++     S  +Q          F   ++    +  W +    + +    +      
Sbjct: 566  AATRDDKQLQPSPLVQ---------AFAQTREAVPLFTAWEQLQWQSREMESIEDTNAGG 616

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
              E Q      + ++     P+  +AR  L+   +P      D  +RG L H+ +  + +
Sbjct: 617  VAEVQRIRGGAAILRDQAACPFQAFARHRLRASEVPEVVLGLDAAERGNLLHHAMEIVWR 676

Query: 822  KRINK--NTPEINHLMKQIIDSHFEKENLPPHID--------IIWRHLFHKISHSFLEHE 871
            K  ++     + N  +  ++D                      +       +  ++LE E
Sbjct: 677  KLGDQAGLLAQSNERLLALVDEAIADALRDIRRKSFVGFRFVELETRRLAGLVCAWLELE 736

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETAQ 930
            +K  +    +F      + +  + + +    DR+D L  G + + DYKTG    K    +
Sbjct: 737  KKR-APFTVVFNESRKDLTLAGLPLSV--RYDRVDALADGGLFVIDYKTGLTAVKSWEGE 793

Query: 931  KLIDPQLSLEAAA----LKAGSFSQIDCRKVA--NLFYIR-LKQKFKIDCITNDKKKYSA 983
            +   PQ+ L A A    + A +F+QI+ R++A   L  +  +    K    +        
Sbjct: 794  RPDQPQVPLYAIANREKVVAAAFAQINSREIALKGLADVPDVAPGLKHPADSGLDLPGVW 853

Query: 984  DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
             +L  +  + L ++ +    GE       ++   +    E     R+       D
Sbjct: 854  KDLLAQWQQTLEQLASDFLAGEAAVA--PKVPGSTCRYCELKGFCRIR--SVTDD 904


>gi|21223552|ref|NP_629331.1| ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
 gi|9714471|emb|CAC01313.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
          Length = 1159

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 132/1081 (12%), Positives = 271/1081 (25%), Gaps = 147/1081 (13%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE+             + +   +++A  ELR       G  +   P   +        
Sbjct: 66   TLVESVADRIARGGDPERILVLTFSRKAAVELRDRMALRIG--AARAPRATTFHSFGYAL 123

Query: 89   FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A  D  L       +S  ++ + +  L+    +        L          +     
Sbjct: 124  VRAHQDSDLFVEPLRLLSGPEQDVTVRELLAGQVDLER---LGLAHVRWPDELRACLTTR 180

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++          + L A         W  AA FL         + V   A  
Sbjct: 181  GFADEVRAVLARSRELGLGPDALAAFARRIGRPDWRAAAVFLAEYLDVLDLQGVLDYAEL 240

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 +   R E    +      + +     + PA  RL+  +A+   G  ++   D   
Sbjct: 241  VHRAVLLARRPEVAAHLTAQYDAVYVDEYQDTDPAQVRLLHALAD--GGRTLVAFGDPDQ 298

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +            +    +          +  L   R     L   +  +  R   
Sbjct: 299  SIYAFRGADVNGILDFPTAFPRAD----GRPAPVGVLRTARRSGSGLLAATRLLTQR--- 351

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
                      + +    +  ++     +    V          E  +IA  LR +  E  
Sbjct: 352  -------MPLTRLPADKVRAHRELTPVRGGGRVEAYTYPTAGTELDNIADILRRAHLEDG 404

Query: 385  --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441
               +  + L+ A       ++  LT  G+ +DI     PL      + L + L A+ +  
Sbjct: 405  VPWRDMAVLVRAGSRTIPTLRRALTSAGVPLDIDGDDLPLRHEPAVAPLLTALRAVAEAE 464

Query: 442  DFMAIATLVKHPLAK----------------------------FGFPEKYLSRAKNALEL 473
                  T  +                                     E   +  K +   
Sbjct: 465  ADTGARTGERFGALGSEADADPRADADADADADADAYVDADADAYVDEGGDAATKLSRGE 524

Query: 474  VALRGNKNSY------------DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
             A R ++  +             +  + +  L R+     +             D+ LA 
Sbjct: 525  HAYRADEPCWLSTETALTLLTSPLAGMDAADLRRLGRALRDERRAAGNPLPPPSDELLAQ 584

Query: 522  LLVD--------------------HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
             L +                     + +    L    + + +       + W        
Sbjct: 585  ALAEPERLAVHDPAYARGAQRLGALLRKARERLAGGGSAEEALWDLWDGTPWPTRLERSA 644

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            +           +L         ++      E  +  +       +I    I  +T+  +
Sbjct: 645  RRGGAAGRNADRDLDAVCALFATAA----RAEERTGGRGALNFLEEIDAEDIAADTLARR 700

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
              +   + ++    S+ L +  +++ G+ EG+WP    +   L         L       
Sbjct: 701  AVRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSPG 760

Query: 682  GQAA----HDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
               A      +  A   R  L+ T      +     SR+L  L V           +R  
Sbjct: 761  ALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGV--EPADVTGRPRRPL 818

Query: 737  CYLDWTRKLDYTTKQPHYKRPK-----------------------PFPPLEAQPRTYSFS 773
                   +L  TT  P    P                        P          +  +
Sbjct: 819  AVAALVAELRATTVDPRVSEPLREAAARRLARLAALTDEDGRPLVPSAHPYRWWGMWDPT 878

Query: 774  EIKQLINDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNIITEL 819
            E K  + D           L                +            G + H +  E+
Sbjct: 879  ESKVPLRDRDQPVTLSGSALDQLANTCALQWFLGREVKADAPATTAQGFGNVVHVLADEV 938

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                   +   +   +   + +    +                    FL+     ++   
Sbjct: 939  ASGHTPADLAVLMERL-DSVWNALAFDAPWKSAQEKANARV--ALERFLKWHVMDRAGRT 995

Query: 880  KIFVNIPAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQ 936
             +       + +E+    + + G  DR++    G   + D+KTG   P      +   PQ
Sbjct: 996  PVASEHDFDVTLEAGEYEVRIRGQMDRVETDADGRAYVVDFKTGKQAPTSSEVARH--PQ 1053

Query: 937  LSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
            L++   A++ G+  +       +      + L+Q            K  A E  E     
Sbjct: 1054 LAVYQLAVREGAVDEAFDGVRPQPGGAELVHLRQGAPKRDGGETLPKVQAQESQEGPEGE 1113

Query: 994  L 994
             
Sbjct: 1114 W 1114


>gi|83749758|ref|ZP_00946734.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551]
 gi|207743471|ref|YP_002259863.1| homologous recombinational repair protein [Ralstonia solanacearum
            IPO1609]
 gi|83723578|gb|EAP70780.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551]
 gi|206594868|emb|CAQ61795.1| homologous recombinational repair protein [Ralstonia solanacearum
            IPO1609]
          Length = 959

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 153/1042 (14%), Positives = 292/1042 (28%), Gaps = 113/1042 (10%)

Query: 10   TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEI 67
              AP   F      A           +D        +  + VPT   I  +R        
Sbjct: 5    AFAPGPAFLPHAADA-------AWRFFDAHAAQAPGAGVVVVPTAAQIPGVRGALHASAQ 57

Query: 68   TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
             G    +LP I +LG      +  DL    +L    S + RLL + + +           
Sbjct: 58   AGGVPRLLPRILTLG-----HWLLDLPPEPSLPAARSPLSRLLAVQQALKT--------- 103

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
                           A    +A+ L  + D +       +   +  + ++ +        
Sbjct: 104  --QAWLREALGAQDDAALWGVAQVLVTVSDELSQRWLTLDAADSETDGRHDVLEAA---- 157

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            L  A ++   +L E    +     +   R  +              G++  IP   R M 
Sbjct: 158  LSAALEHTYAQLSERFLGTESRIVLTFWRLLS--------------GASDPIPVRLRAMR 203

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             + +   G +V           +                             +  L I  
Sbjct: 204  RLLDALRGPMVWMSPTDPEGADLDFLTRAAGR--------------------VPVLRIGY 243

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            +   R                   L   +                ++    + +  A   
Sbjct: 244  DWQAREPAPEAAAPATHAAFRNLLLHAWSECGTAAQPAAEASAEAERPPPGLRIAGAARF 303

Query: 368  REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
             +EA   A  L   L+  ++  AL+  DR +ARRV+  L R  + +    G  LSTT  +
Sbjct: 304  EDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKLSTTRAA 363

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            + L   L+ +    D  A+  L+K P                  EL      +N      
Sbjct: 364  AALMRWLDVVQGDGDTAALLDLLKSPFCLREADAPSSVAPAWVAELERRVRRRNVSGGWG 423

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                +  +  T  +   V          ++                L+  +       G+
Sbjct: 424  RLRRLAAQRGTDTDAADVTDATDAGPLAERL--------------GLLADEAALWRRAGH 469

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             ++  W  L    L  + +    +  +   +          S      +  + +  EW  
Sbjct: 470  ATLEAWVTLLAGTLDRLRMRTGLQNDDAGRQLLDWLDRLRVSVHGSADAGARFSLQEWRA 529

Query: 608  IITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            +++ L++          +   + IL    +R+  FD +++ G ++   P    +  F S 
Sbjct: 530  LLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPEWLFFSN 589

Query: 667  VMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQRLLVLGG 724
             ++ +L L    +   Q A D   +      ++ T         P   S WL+RL     
Sbjct: 590  DVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPNRLSGWLERLQRRL- 648

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                  ++      L   +     T  P              P T S +    L   PY 
Sbjct: 649  --AVAGMRIDAPVVLPALQTASRPTDMPAPA------APALVPATLSAAAYNSLRRCPYQ 700

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDS 841
             +  R+L+L  +     + ++ D G L H I+    ++ ++    +  +   L++ + D 
Sbjct: 701  FFVGRMLRLGELGEVSDELEKRDVGELLHAILHRFHRQLLDTPMADPADRLALLQSLTDE 760

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAI---ESIGIH 897
             F          + +   +  +  S+L  +   ++         + A  +I       + 
Sbjct: 761  RFGSLLAEDGHALRFYRRWQDVMPSYLAWQAAREAEGWRFEAGEVDADTSIALPGGQALR 820

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK--LIDPQLSLEAAALKAGSFSQIDCR 955
            L G  DRID      V + DYKT          K    D QL          +       
Sbjct: 821  LRGRIDRIDTHPEHGVAVLDYKTQSPIALARKAKTPFEDCQLPFYGLLDARAAVGGWVSL 880

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015
                        +               D L+E+  K++  +                  
Sbjct: 881  DG--------DARGDKRETGLPDFTEVVDWLTEQMGKDMTALAAGAPLPAFG-------D 925

Query: 1016 EKSNIQSEYDHLARVAEWREEY 1037
            E +        L R   W    
Sbjct: 926  ESACRYCAARGLCRKGYWSAGA 947


>gi|257054746|ref|YP_003132578.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017]
 gi|256584618|gb|ACU95751.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017]
          Length = 1066

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 128/1036 (12%), Positives = 271/1036 (26%), Gaps = 129/1036 (12%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGK---------KSTILPIIKSLGDVVEEKFTADLLLS 96
            SV +   +++A   LR++                ++   PI++++            +  
Sbjct: 58   SVLVLTASRQAADALRADITRRLTGHRGERAGEVRTVREPIVRTVHSYAFAVLRLQAVRD 117

Query: 97   YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156
                P      RLL      ++ R  L   ++   P+ P             A+ L D++
Sbjct: 118  GLPVP------RLLSGPEQDVVVRELLAGDLERGAPDWPE-PLRPALAVPGFAEELRDLL 170

Query: 157  DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY-WTERLVELNASSPVGYQIALM 215
                      EDL  L + +    W+ A  F +   +    + +            +   
Sbjct: 171  LRAAERGLGPEDLIKLGHRQGRDEWVAAGRFWRQYEEVTLLQGVGGHAVGESGAPALDAA 230

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
               A  L++    P ++AG                      + +       P        
Sbjct: 231  ELVASALVELEGDPELLAG---------------EQARVRHLFVDDAQHLDPLQYRLVRL 275

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
               T   +          +S       L    +       V    +    V+ ++     
Sbjct: 276  LAETASDAVLAGDPDQSVFSFRGADPRLFADADPDGDRTVVLTRSHRLDPVVHEAVGRIA 335

Query: 336  TSDM--RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393
             +                 ++    V    +     EA  IA  LR +   +    + + 
Sbjct: 336  ATLPGTSAHRASVPTPTRGREGRGKVRTRLSPTPAAEAAWIADQLRRAHLLDGVPWSQMA 395

Query: 394  ADRNLARRVKLELTRF-----GINIDISAGIPLSTTLHSSILTSLLNAIFKL--NDFMAI 446
                   R    L R           ++  +PL+       L ++L A       D    
Sbjct: 396  VLMRSVSRSLPVLQRALTMAGIPVAAVTEELPLARQPAVRPLLTVLWAAADPRVLDAETA 455

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              L+  PL           R       +   G ++S                        
Sbjct: 456  EMLLSSPLGGADPLALRRLRRGLRRLELVAGGERSS-------------DELLVEALRDG 502

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
               + L++ +      +   +      + +    ++        S      V        
Sbjct: 503  DVLAGLADAEAAPVRRVSRLLTVAREAMRSGAGVEDVLWQVWQASGLQDRLVAQAAKGGT 562

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
               R   +L         +  +   +     +         + ++ I G+++ P   + S
Sbjct: 563  LGMRADRDLDAVVALFDAARRYVDRLPKAGVLGFVEY----LSSQHIAGDSLAPVAVRGS 618

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG---- 682
             + +L    +    +  + + GL EG+WP    +   L      DL     +  +     
Sbjct: 619  GVSLLTAHGAVGREWSVVAILGLQEGMWPDLRLRGSVLGVERLVDLLSGVDDDAVATVSA 678

Query: 683  -------QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL-------GGTDFF 728
                   +    +  A+  RH +   +++  +     SR+   L+         GG D  
Sbjct: 679  TAPLLAEERRLFYVAASRARHTLLVSAVQGEDE--QPSRFFFDLVDAGVDTERGGGPDVR 736

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------------------------------ 758
               ++RG    +   +L         +  +                              
Sbjct: 737  LVARERGLTLAELVGELRAAVTDTELEPRRRKLAARQLARLARDGVPGAHPEQWYGLAGN 796

Query: 759  ---PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                      +    S S +  L+  P      R    D              GTL H  
Sbjct: 797  SSDRPLREPDEVIRVSPSVVDTLVKCPLRWLLERHGGTDPAQ------LSAVTGTLVHA- 849

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
               L +        +          +  +            R     +  SFL    + +
Sbjct: 850  ---LAQAAAEGTDEQTLWKELDEAWAKVDAGAPW--FSRKERVRVEGMVRSFLTWLRQSR 904

Query: 876  SSIEKIFVNIPAKMAIESIG----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
              + +  V    ++++        + LTG  DR++L   G   + D KT  +P  + A  
Sbjct: 905  DELTQHAVEQDMRVSLPEAEGEPSVALTGRVDRLELDAEGRPVVIDLKTSKSPVAKDAAA 964

Query: 932  LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
               PQL++   A   G+FS            + + +       T  ++    +E + + L
Sbjct: 965  -EHPQLAVYQLATLLGAFSG-HKGHTGGARLLYVGKPNAKTGATVREQPALDEETARRWL 1022

Query: 992  KNLIEIVTLLQNGEQP 1007
              + +          P
Sbjct: 1023 NEVRKAAVDTVGPTYP 1038


>gi|160938157|ref|ZP_02085513.1| hypothetical protein CLOBOL_03051 [Clostridium bolteae ATCC BAA-613]
 gi|158438961|gb|EDP16717.1| hypothetical protein CLOBOL_03051 [Clostridium bolteae ATCC BAA-613]
          Length = 1196

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 123/968 (12%), Positives = 264/968 (27%), Gaps = 151/968 (15%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
                 L   I  +       + L  ++ E          + L++    + E +     + 
Sbjct: 127  GFIGQLKSQISELYQYGITPDMLRDVRGEADSPLLAQKLEDLEVIYSGFREYIESHYIT- 185

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 + ++  E           I++ G TG  P   RL+     H    +    +D   
Sbjct: 186  -AEEILDILCRELPKWEPLKDSIILLDGYTGFTPVQYRLVELFLMHAREVVCTVTID--- 241

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                           +  N    +  Q+        +       K+ G    E    S  
Sbjct: 242  ---------------SRENAYKESSIQHLFYMSRHTVCRVASMAKQHGIPKKEDIICSRR 286

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
             +  +      D    ++        +     + + +  N   EA  +   +   + E  
Sbjct: 287  PAWRYDESPELDFLEQNLYRYSGRTWEGKEERIQVYKGRNPAGEAAYVCSRIEQMIKEEG 346

Query: 387  ---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               + +A+IT D  +  R +  +    GI   +     +       ++ + L  +     
Sbjct: 347  MRYRDAAVITGDLPSYGRELAHQFDEAGIPYFLDDKKSILENPMVELIRAALEMVKD-FS 405

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELV-----ALRGNKNSYDIMDLKSLVLDRIA 497
            + +    +K  L            A +                      +    + DR+ 
Sbjct: 406  YESAFRYLKTGLVYDKAGSTEERAAADTAADTSGDAGEADAGSGFNGSREHAEQMTDRLE 465

Query: 498  TQKNNTHVPHWQSRLSEEDKELAV-------LLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                   +  W+   S  +++           L  + +  + PL   +    +     +I
Sbjct: 466  NYVRALGIRGWKRWDSCWERQYRGGEKLNLKELNQYRMWILEPLRPLREAFKAEGA--TI 523

Query: 551  SDWTKLTVTCLQNVCLDE---------------HRKLPNLWFEEEGKTLSSLFSKIIETG 595
            +  T      L+++ L E                 +     + +    +  LF ++    
Sbjct: 524  ASVTAALRQFLEHMELREKLEEYRDFFLERKEPGDENLAREYGQVYDRVLELFERLEGLL 583

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
               KA+   +I I+        V         + +     SRL     L   G+NEG  P
Sbjct: 584  GAEKADMKNYIQILDAGFQEIQVGVIPATVDQVMVGDITRSRLEAVKVLFFVGVNEGTVP 643

Query: 656  KNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRSL-REN 706
            +       LS   ++ L         T ++          +     +R L+ T +    +
Sbjct: 644  QRKNGGSLLSDRDRAALRKMDIELAPTVKEDGCIQKFYLYLMMSKPSRQLVLTYAGLTPD 703

Query: 707  NIPTIASRWLQ------------------------RLLVLGGTDFFDNLKKRGQCYLDW- 741
                  S  +                         R            ++++G+   +  
Sbjct: 704  GKSQRPSNLMGEVGKLFPGMKTLDEHSVEWPVRTGRDARELLIQGLRGMQEQGEDDRERE 763

Query: 742  --------------------TRKLDYTTKQPHYKR---PKPFPPLEAQPRTYSFSEIKQL 778
                                 R+L       + +R         L  +    S + ++Q 
Sbjct: 764  DAAFMQLFQHFYTSQEHRDKVRQLVDAAFYSYEERGIGRAAARALYGRELQGSVTRLEQF 823

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
             +  YA + R  L+L      + + +  D G LFH  I        ++        + + 
Sbjct: 824  ASCAYAHFLRYGLELMERQ--EYELEAVDMGNLFHQSIDRCFASMKDRGQDW--RELTEE 879

Query: 839  IDSHFEKENL-------------PPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFV 883
                  KE +                 +        +I+    +   E+  +   E +  
Sbjct: 880  GRKSLVKECVTQVTEEYGNTIMSSSARNAYLAGRVERITDRTIWALAEQVKKGDFEPVGF 939

Query: 884  NIPAK-------MAI---ESIGIHLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETA 929
             +          M I   E   + L G  DR+D    +      I DYK+G         
Sbjct: 940  EVSFSAIDNLKAMRIGLSEDEELQLRGRIDRMDLCRDEDHVYVKIIDYKSGTTSFDLAAL 999

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRLKQKFKIDCITNDKKKYSADELS 987
               +  QL +   A       +   ++V  A +FY  +      D I + ++     ++ 
Sbjct: 1000 FYGLQLQLVVYMDAAVEMEERRHPDKEVVPAGIFYYHIG-----DPIADKQEGMDERDIE 1054

Query: 988  EKSLKNLI 995
            ++ LK L 
Sbjct: 1055 KQILKQLR 1062


>gi|229084225|ref|ZP_04216509.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-44]
 gi|228699103|gb|EEL51804.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-44]
          Length = 1165

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 113/940 (12%), Positives = 253/940 (26%), Gaps = 138/940 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            L +    A      ++L  +I   +       +++ +    +                 L
Sbjct: 102  LYVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSGDEQKLLANKIYDL 161

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           I I G     P    ++  
Sbjct: 162  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSDYVKGAEIYIDGFHSFSPQELEIIRQ 219

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +  +     V   +D        + +                        L     +  E
Sbjct: 220  LMIYGARITVTLTVDEKTLAQPVSELD-----------------------LFYQTVLTYE 256

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
             VK+L          ++ + +       +        E++     +   D+ L  A N R
Sbjct: 257  KVKQLAREEKIAVENTIPMREQPRFHSPALAHLEAEFESRPSKKFQSEPDITLYTAANLR 316

Query: 369  EEAISIAIALRMSLDENK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             EA  +A  +R  + E     +  A++  +  +    +K   T + I   +    P+S  
Sbjct: 317  AEAEGVAREIRRLVAEEGYRYRDVAVLLRNGESYYDVMKTLFTDYDIPHFVDEKRPMSHH 376

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483
                 + S L  I     + A+   +K  L       K  +    +  E   L       
Sbjct: 377  PLIECIRSALEVISGNWRYDAVFRCIKTELLYPLDVRKESMREEMDEFENYCLAYGVQGK 436

Query: 484  DIMDLKSLVLDR---IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                 +     R   +      T             +++    +  + +      +    
Sbjct: 437  RWTADEPWTYRRYRSLDGAGTQTDSEREMEEKINRLRDVVRTPIIRLQKRFKRATSVMQM 496

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
              +    L   +  K            E   L     ++  + + +L    +E     K 
Sbjct: 497  CEAMYLFLEELEVPKKLEDLRMR-AEAEGNFLFASDHDQVWEEVMNLLDTFVEMLGEEKM 555

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            +   +ID+IT  ++             + I     +R+ N     + G NEG+ P   + 
Sbjct: 556  SRAMFIDVITTGLEALQFANIPPSLDQVLIANIDRTRISNVRAAFVIGANEGIIPAAPSD 615

Query: 661  NPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIA 712
               LS   +        +L   T +  + +    ++     +  L  +  L +    ++ 
Sbjct: 616  EGMLSDEERESLATAGVELAPTTRQTLLEEQFVIYQTVTRVSEKLYISCPLADEEGKSLL 675

Query: 713  SR----------------WLQRLLVLGGTDFFDNLKKRGQCYLDWTRK------------ 744
            S                 ++   +         +     +  L +  +            
Sbjct: 676  SSSFIKKVKRMFPSVKEVFITNDVNDLSRQAQISYVATPEVTLSYVTQQLQNWKRYGFEG 735

Query: 745  ------------LDYTTKQPHYKRPKPFPPLEAQPRTYSF---------------SEIKQ 777
                        +     Q    R         + +  S                S ++ 
Sbjct: 736  NLDFWWDVYNFYVTSPDWQQKSSRVLSSLFYRNRAQKLSPVVSRDLYGDKIKGSVSRMEL 795

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI--NKNTPEINHLM 835
                 YA +A+  L L     F    D  D G LFH  + ++  K +  N+   +++   
Sbjct: 796  FNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKE 853

Query: 836  KQIIDSHFEKENLPPHIDIIWR---------HLFHKIS--HSFLEHEEKIQSSIEKIFVN 884
             + + +   +E  P     I               +I    S +  E    S    + + 
Sbjct: 854  CEHLAAVVIEEIAPLLQRQILLSSNRNHYLKQKLQQIIFRTSLILREHAKSSGFVPVDLE 913

Query: 885  IPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYKTG-DNPKKET 928
            +P  M    ++  +   L         G  DR+D    ++G  + I DYK+         
Sbjct: 914  VPFGMGGTGSLPPMEFTLANGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSTKALDLTE 973

Query: 929  AQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965
                +  Q+      + + +     +      A + Y  +
Sbjct: 974  VYYGLALQMLTYLDVVISNANTWMKKDQTASPAGVLYFHI 1013


>gi|289640616|ref|ZP_06472788.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
 gi|289509505|gb|EFD30432.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
          Length = 1162

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 127/1027 (12%), Positives = 261/1027 (25%), Gaps = 125/1027 (12%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            T+VE       + L  A++ +   ++RA +ELR          +  +P+  +        
Sbjct: 66   TIVEAVARRVRDGLDPAAILVLTFSRRAARELRERITWRL-GAAVGVPLAWTFHAWCYAL 124

Query: 89   FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
                      + P      RLL         R+ L    +   P  P +           
Sbjct: 125  LRLYRPDPLGVPP------RLLSGPEQDAQLRDLLAGTREVGRPRWPAA-LAGCLTTRGF 177

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
            A+    ++          + L  L  +     W   A F                     
Sbjct: 178  AEETRAMLARAREVGLDPDALARLARDTGRADWAAMATFYADYLDALDHVGAIDYPELVQ 237

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
               +     +    ++     + +     + PA  RL+  VA    GA ++   D     
Sbjct: 238  RAALVAESDDVGAQLRRRYQAVFVDEYQDTDPAQERLLRAVAG--GGADLVVVGDPDQSI 295

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +     +      +   +       +  L     +    +     V+           
Sbjct: 296  YGFRGAEVRGLLEFPARFPHVDGRAADVVTLRRCRRLGPVALAVSREVARR--------- 346

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
               +P       +       +         V          +A  IA  LR     N   
Sbjct: 347  ---IPATGLPAGHLRAHRELVAAGPPVAERVEARTYTTTGAQAEGIADLLRREHLGNGTP 403

Query: 389  S---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                A++      +  +   +   G      AG  L      ++   LL           
Sbjct: 404  WERMAVLVRSATRSMLLLRRMLVAGGVPVEVAGDELPPARDGTVAPLLLALRCVDGPPNE 463

Query: 446  IATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            +     H L        +    RA       A R    +  +   ++    R+A     +
Sbjct: 464  LTAQAAHTLLTSPLGGADPGALRALGRALRAAERVAIAAGAVATARTDGAGRLAGLPAES 523

Query: 504  HVPHWQSRLS-------------------------EEDKELAVLLVDHILQCITPLVTYK 538
              P  ++                            E     A  L + +           
Sbjct: 524  AAPGGRAGGPAMPASSAELLRQAVVDPDRALLMVEERLAGPARRLGELLRSARAVRAAGG 583

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
            T+++      S S W +                  +L   +    L +   +  +     
Sbjct: 584  TSEDVLWVLWSGSGWPRRLERASAAGGAAGRAADRDL---DAVVALFAAVGRSSDRHGPG 640

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                    ++  + I G+ +  +  +   + +L    S+ L +D +++ G+ +G WP   
Sbjct: 641  TGIGPVLDELEQQQIAGDVLTERPARPDVVRLLTAHRSKGLEWDVVVVCGVQDGEWPDLR 700

Query: 659  AKNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPT 710
             +   L         L       T  + +      F +A     R L+ T      +  T
Sbjct: 701  TRYSLLEAERLERPELGGVREPVTRAELLADERRLFYVALTRARRRLVVTAVDSAEDQGT 760

Query: 711  IASRWLQRLLVL-------------------------------GGTDFFDNLKKRGQCYL 739
              SR+   L                                     +    +++     L
Sbjct: 761  SPSRFFHELAEAERLGVVVTRGRSRPARPLTLPSAVAALRRAAVDPESTPAMRQAAAARL 820

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPL--------------EAQPRTYSFSEIKQLINDPYAV 785
                       +P     +P                     P   S S +  L+  P   
Sbjct: 821  ARLAAAVDDAGRPLVPAARPGRWWGLVEVTSGEVPVVAPDAPVRLSGSSLSGLVTCPTRW 880

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
            +           + +        G + H +  E+   R   +   ++  + ++      +
Sbjct: 881  FLEHEAHAQGTSNAEMG-----FGKVVHALADEVATGRTPPDLGALDTRLDRVWRHLGYE 935

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK--MAIESIGIHLTGFAD 903
                                 FL      +     +   +P    +A+    + L GF D
Sbjct: 936  AQWRSEQQRAAARQAL---ARFLVWHAAAR-GRRLVASEVPFSCDLAVGGRTVRLRGFVD 991

Query: 904  RIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDC---RKVAN 959
            RI+L  +G V + D+KTG   P      +   PQL +   A++ G+ +        +   
Sbjct: 992  RIELDDAGRVHVVDFKTGRTAPSGTDVARH--PQLGIYQLAVRGGAVASAGPGSGAEPGG 1049

Query: 960  LFYIRLK 966
               + L+
Sbjct: 1050 AELVHLR 1056


>gi|294794376|ref|ZP_06759512.1| putative ATP-dependent deoxyribonuclease subunit B [Veillonella sp.
            3_1_44]
 gi|294454706|gb|EFG23079.1| putative ATP-dependent deoxyribonuclease subunit B [Veillonella sp.
            3_1_44]
          Length = 1164

 Score =  212 bits (538), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 118/1005 (11%), Positives = 249/1005 (24%), Gaps = 146/1005 (14%)

Query: 109  LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
               L RL++  + K             L L          +  L  +            D
Sbjct: 93   RAMLLRLVMKRKQKE------------LGLLEQATKRPEFSSVLQQLFSEFRAFRVGPAD 140

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
            L                  L I    + E L              ++ A  +  +     
Sbjct: 141  LERGAETVKNNVLQKKLRELAICMSAYEEELSRHGERDIDPIM-EIVEALPQSPLME-NS 198

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
             + I G     P    L+ T+ +    A++   +D  +     N                
Sbjct: 199  HVFIDGFHWFTPTHYELIYTLFDLAKEAVIT--IDLPMAPKALNLARR------------ 244

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
              H      ++ D L  +                    +                     
Sbjct: 245  GEHLFSRPLEIYDTLVARYGFNINW-------------VGFDGKRGPQIVQELEANYFAS 291

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLD----ENKKKSALITADRNLARRVKL 404
                    + + LI   N   EA ++A  +   ++       +   ++  +         
Sbjct: 292  PSKKNTTDATIPLIRGYNREREADAVARRILAYIESSEEARYRDVCIMLRESETYGDTLE 351

Query: 405  -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
                R+GI   I    P+       +LT+L + +       ++  L+K  L         
Sbjct: 352  KVFARYGIPHFIDRQRPMKNHPLGELLTALFDIVRHNYSRDSMFLLLKTDLMPLTREAVD 411

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                   LE               L+     +      +       ++  E   ++    
Sbjct: 412  ELENYV-LEFGIDHYKWERESWPYLRGFHEGQDEESHVDAPRRARVNKAREIIMDILSPW 470

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
             D          T         G L I    +      ++      ++      E+    
Sbjct: 471  FDFAANAEGH--TGAEWGTQLYGLLEILQVPERLYEWAKDAETIGDQESKAS-HEQMYNA 527

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            + S   +I            E + ++   +              + I          +  
Sbjct: 528  VLSFIDEISMVMKDEILTLDEMMLLLEEGLSDVNYSMIPPSLDHVVITTIERGYSQWWPK 587

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNL--------KTAEKYIGQAAHDFEMANGTR 695
            + + GLN+GV+P++      +    + +L             + +         M   + 
Sbjct: 588  VFVMGLNQGVFPQSMGDEGLIKDKERQELADAGITLAEGALPKAFNENFLLYLAMTRASD 647

Query: 696  HLIYTRSLR-ENNIPTIASRWLQRLLVLG------------GTDFFDNLKKRG------- 735
             L  + +   E+      S   +RL  LG              D   +   R        
Sbjct: 648  SLTLSYAGSGEDGTGLEPSLVAKRLESLGYIDQVVDIPLSIAPDTEADYVWRPLQSLSLL 707

Query: 736  -QCYLD----------------WTRKLDYTTKQPHYKRPKPFPPLEAQ------------ 766
             + +                  W R+ +    +            +              
Sbjct: 708  SERWGALFSGYEVNPLWWGLYNWARESETYRPRLAEVSRGIRDNNDVPVITQDLVNGLFL 767

Query: 767  ---PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI--- 820
                 + S + +++    P+  YA+  LKL+      +     + GT  H  +  L    
Sbjct: 768  SKGYMSGSVTRLERYQQCPFKFYAQYGLKLEPR--PVRSFGAPEIGTFLHANLERLGNYL 825

Query: 821  ----KKRINKNTPEINHLMKQIIDSHFEK----ENLPPHIDIIWRHLFHKISHSFLEH-- 870
                K+  + +  E  +L + + D   ++    E               +  H  ++   
Sbjct: 826  LENNKQWRDLDEEEQENLCRTVADEILQENQLGEETSDAYQKAIEQRVQRTLHVTVDRLV 885

Query: 871  EEKIQSSIEKIFVNIPAK-------MAIESIG---IHLTGFADRIDL--LKSGFV-DITD 917
            E   +S  +  ++            + +       + L G  DRID           + D
Sbjct: 886  EWSKRSDFDTKYLEQDFGRQGGWDPIRVSLGEDRYLRLIGQIDRIDEYTRDDQTYGMVID 945

Query: 918  YKTGDNP-KKETAQKLIDPQLSLEAAALK-AGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
            YK+G      +     +  QL     AL+ A   +       A + Y  +K         
Sbjct: 946  YKSGGAHVTAQDVYYGLKLQLMTYLLALESAYGKTHGGSMSPAAVVYSYVKNPKIPADAP 1005

Query: 976  NDKKKYSADELSEKSLKNL------IEIVTLLQNGEQPFISHLRL 1014
               +   +      + +N       IE++T + N    + S    
Sbjct: 1006 ISYEDAVSLANESDAWQNSGYFSDDIELLTHIDNKFLSYGSKRGP 1050


>gi|326335404|ref|ZP_08201591.1| hypothetical protein HMPREF9071_1057 [Capnocytophaga sp. oral taxon
            338 str. F0234]
 gi|325692170|gb|EGD34122.1| hypothetical protein HMPREF9071_1057 [Capnocytophaga sp. oral taxon
            338 str. F0234]
          Length = 911

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 148/1029 (14%), Positives = 308/1029 (29%), Gaps = 160/1029 (15%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +I   L   +  +             +    P +R+   LR  + +    K TI P
Sbjct: 2    FLERVIDDFLENYVDYSTE----------DIIFVTPFRRSALFLRKIYAQKL-HKVTISP 50

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
               +L +++E                +S+IQ L EL  +     +   D  +       L
Sbjct: 51   EFITLDNLLERISGIR---------KMSDIQGLFELYHIYKENTDTERDDFEKFIGWGQL 101

Query: 137  S--LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG--MWWLLAADFLKIAS 192
                     + +   K++   ++ I+  E  W     L   +     +W      L    
Sbjct: 102  LWNDFSDIDHYLIPQKDIFPYMEAIKEAE-HWSVGEELTPIQKRYLTFWRN----LGSYY 156

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            K     +++             +     +  K  K   I  G      A   ++  +   
Sbjct: 157  KNLRSEMLQQRLGYQGFIAREAVSQLDVYKSKNEKKLHIFVGFNALTKAQEHIIQYILEE 216

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
              G  +   ++ ++           +            + Q  L K +    I R     
Sbjct: 217  MKG-DIYWDIEKYLLEG-----EHSAGYFIKKYINEWRYYQGRLPKWIKDTPINR----- 265

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                                                         ++A+     +  +  
Sbjct: 266  ---------------------------------------------NIAIYGTPKQVNQVH 280

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
             +   L    +    ++A++ +D ++   +   +    + I+I+ G PL  T    + +S
Sbjct: 281  LLTDILEKLPETELDQTAIVLSDSDMLLPLLQSIDTHKLPINITMGYPLQQTPLHDLFSS 340

Query: 433  LLNA-IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
                 I        +  L+  P     F E               +   +  +  +L  +
Sbjct: 341  FFKLYISGKWYHKEVKALLMQPFLSNLFSED------------YKKNTISFINEYNLIYI 388

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
                +     +           +        L++++L+ +                    
Sbjct: 389  YKKHLEKYVKDADKILIDLIFDDTKNISVSRLIENVLRFL-------------------- 428

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                      +++  DE     NL +      L +     ++       N      +   
Sbjct: 429  ------FIIRESLEKDESSNKLNLEYLYNFYELFNQLD-FLQRKYGFIENIKSLYYLYND 481

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            L+  + +  + E    L I+G LE++ + F  +++  LNEG++PK  +KN  +   ++++
Sbjct: 482  LLAKQKLNFRGEPLQGLQIMGILEAQNIQFKNVLVTSLNEGIFPKGNSKNSLIPFDVRTN 541

Query: 672  LNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFD 729
            L L T ++      + F      T   I   +        +  SR++ +L      +   
Sbjct: 542  LELPTYKQEDYVYTYYFYRILQHTNKAILFYNTDTEGLKGSEKSRFILQLFSALRIEPTI 601

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
               +           L         K            R +S S +   I +P   Y ++
Sbjct: 602  KSPEVKIVEHQPIEVLKNREIINKLKDIATGKDK-KHGRGFSSSALTSYIMNPIIFYQQQ 660

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-NTPEINHLMKQ----IIDSHFE 844
            IL +      ++  +    G + H ++  L    I K    E    M++    ++   F 
Sbjct: 661  ILDVKDEKEVEEIVENRSFGDIIHRVLQILYTPYIGKILFKENIKQMREKVSLVVRKIFI 720

Query: 845  KENLPPHI---DIIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPA--KMAIESIGIH 897
            +      I   ++       +  H FL  +EK  S   +E +F+      ++  E     
Sbjct: 721  EYQKNEDITGKNVFILKTIEEYIHKFLSVDEKNVSEQIVELLFLEKKILTEVRYEEFDFP 780

Query: 898  L--TGFADRIDLLKSGFVDITDYKTGDNPKKETA---QKLIDP-----------QLSLEA 941
            +   G  DR++   +G + I DYKTG   ++      +K  +            QL + A
Sbjct: 781  ILYNGTLDRVEKR-NGAIYIVDYKTGRV-EQRQITLTEKHWEKLIIDFKYSKAFQLLMYA 838

Query: 942  AALKAGS-FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-EKSLKNLIEIVT 999
              L+            V N  +  LK  F    I + K   S D     K  + LI ++T
Sbjct: 839  YLLRKSGKVEDDIPIYVGNYSFKNLKPGFLGFKIASGKPMVSIDNAILTKFEEKLIALLT 898

Query: 1000 LLQNGEQPF 1008
             + +   PF
Sbjct: 899  EIYDPSIPF 907


>gi|94311070|ref|YP_584280.1| DNA helicase/exodeoxyribonuclease V subunit B [Cupriavidus
            metallidurans CH34]
 gi|93354922|gb|ABF09011.1| ATP-dependent nuclease, subunit B [Cupriavidus metallidurans CH34]
          Length = 976

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 170/1058 (16%), Positives = 317/1058 (29%), Gaps = 122/1058 (11%)

Query: 10   TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG 69
            +  P   F  +   A         +  D   P       I VPT   I  +R        
Sbjct: 5    SFPPGPSFLDQAATA-------TWYFLDHCGPAA-TGAHIVVPTAAQIPGVRQALDAAAR 56

Query: 70   --KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
               +  +LP + +LG            L+ +  P   +  RLL + + I           
Sbjct: 57   AAGQPRLLPRVLTLG---HWLLDLPPDLAADPTPTRGHAARLLAVQQAI----------- 102

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
            +            +   A  LA+ L  I D +     +   +    + +       AA  
Sbjct: 103  RSQDWLRTAFGAQTEGAAWGLAQTLLSISDELSARWLEDAAIRGDDDLEGDDSDERAALL 162

Query: 188  LKIASKYWTERLVE----------------LNASSPVGYQIALMRAEAEHLMKGTKGPII 231
                 + +                           P+  +   ++  A+ +     GP++
Sbjct: 163  QGALQRTYAHLSERFLGQEAQIVLAFWQMLSGPDDPLPARRRALQRMAQQVA----GPVV 218

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
              G T   P  AR +           V            W   +E         T  +  
Sbjct: 219  WIGPTSPEPVEARFLEQAGELVPTLEV---------GYDWTGASEAGGESDWYRTLLALW 269

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
            P                              R    S +   P  +       L  ++P 
Sbjct: 270  P----------------------------EARRDGDSSADSEPFAAPPALPAALSAELPA 301

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
             +     V +I +    +EA + A  L   L+E ++  AL+  DR +ARR +  L R G 
Sbjct: 302  ERPR---VRVIGSARFEDEAAAAADQLVQWLNEGRRHVALVAHDRVVARRARALLARAGA 358

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
             +    G  LSTT  ++ L    + + +  D  A+  L+K P      P      A  AL
Sbjct: 359  PVRDETGWKLSTTRAAAALMRWFDVLARDGDSAALLDLLKSPFC---LPAFEHRGAAIAL 415

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                +R    +     L  L  +R                 + E  +  + +       I
Sbjct: 416  MERRIRRAVVTGGWARLAHLFAERERAAGA------LVDAETMEASDAELQIRAAARTLI 469

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
              L               +  W       L  + +       +   +             
Sbjct: 470  ATLADEAAQWPRGLAQQPLHVWLGRLDAMLDTLDMRVALAADDAGRQLLDALAKLGDLPD 529

Query: 592  IETGSCIKANAIEWIDIITRLIDGETV-KPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
             ETGS    N  E+  +++ L++     +P  +  S + IL    +R+  FD +++ G +
Sbjct: 530  DETGSHATLNQQEFRAMLSALLESVAYKEPSAQSQSRITILPLNGARMRRFDGVVVVGCD 589

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSL-RENNI 708
            +   P + A+  F S  M+ +L L+  E    Q A D   +      ++ T         
Sbjct: 590  DAQLPSSAAELMFFSNQMRRELGLEDREARFAQQARDLAEVLLNNSDVVLTWQRIGSRGE 649

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
            P   S W++RL             + G           + T       P P  P E  P 
Sbjct: 650  PHHVSGWIERLS--------ACCARAGTPIEASATPALHDTFAQPAGMPAPVAP-ERVPE 700

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI---N 825
             +S      L   PY  +A R+L L  +     D ++ D G L H ++ +  ++      
Sbjct: 701  RWSAQAYNTLRRCPYQFFASRMLGLSGLDTLSDDLEKRDIGNLLHRVLLQYHEEIHASGE 760

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKIFVN 884
            +++      +++I D+ F K+       I +   + ++  S++  + +  ++        
Sbjct: 761  RDSDRRLARLREISDTSFGKQIAEDGNAISYYRRWMEVLPSYVAWQAEREEAGWHWRGGE 820

Query: 885  IPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSL 939
              A + +   + + + L G  DR+D    G   + DYKT      +++      D QL+ 
Sbjct: 821  FDAGVDVAMPDGVPLRLAGRIDRLDKGPDGAHAVLDYKTQPASRLRRKAGDAEEDCQLAF 880

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
                      +         L  ++   +        +              + L   V 
Sbjct: 881  YGLL-----RADAVAGSWVALEGVKQGGRDSSPGAQREVDLPEFQAAVTWLERQLRHDVV 935

Query: 1000 LLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
             L+ G +           +    +   L R   W    
Sbjct: 936  RLRQGAK---LPAIGDAAACTYCDARGLCRKGFWESTA 970


>gi|88856785|ref|ZP_01131439.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1]
 gi|88813953|gb|EAR23821.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1]
          Length = 1033

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 131/1030 (12%), Positives = 275/1030 (26%), Gaps = 119/1030 (11%)

Query: 12  APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
           AP S     ++       + E       +P     + +   T+++   LR          
Sbjct: 40  APGSGKTETLVE-----VVAERVHSRGWSPE---QIVVLSATRQSATALRDRLASRID-A 90

Query: 72  STILPIIKSLGDVVEEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDL 130
            T+ P+ ++   +  E       ++ +  P + +  ++   +A L+        +I    
Sbjct: 91  PTLGPMARTANSLAFEVIREAAAVAGDGAPTLLTGAEQDQIIAELLA------GEIADGS 144

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
               P  L             L D++           DL  L        W+ A+ F+  
Sbjct: 145 GAPWPSHLDAEVRRLRGFRTELRDLMMRCVEFGVTPRDLAQLGERNDRPEWVAASAFIS- 203

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIPATARLMSTV 249
                     + +  +      A       H         +I+  +     AT  L+  +
Sbjct: 204 VYDAVKASYRDRHFDASELLAEAAALIAEGHYAAVDRLRLVIVDDAHELTEATISLLRAL 263

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
           A    G  ++   D  + T  +                        L++  + L+++   
Sbjct: 264 A--TRGITIIGFGDPDLTTGSFRGAQPG-----------------VLSRWAEQLELENCQ 304

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
              L +V          +         S +       +         S +   +     E
Sbjct: 305 TLFLSSVHRHSASLRSAVIDVTQRVGVSGLIEQRKSMSVATE----PSSIHSFQLSTPAE 360

Query: 370 EAISIAIALRMSL---DENKKKSALITADRNLARRVKLELTR-FGINIDISAGIPLSTTL 425
           E   IA  LR           + A+I    +L   +  +L     +    SA   +    
Sbjct: 361 EVAFIARHLREKHVLESVPWSRMAVIVRTGSLIPSLARQLRTLEVVTSVSSARSAVRDEF 420

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
             + L  LL    +     A + +     +  GF    L R K AL   AL         
Sbjct: 421 SVNGLIVLLELALERRTLDAASAVELLSSSVGGFDAVSLRRLKAALRHEALGAEIYDSAD 480

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
             +   +             P   + +       A  +  ++ +         T +    
Sbjct: 481 QLIAQALA-----------APAGFTSIETRVSRQAAAVAKNLHETAAAGAAGDTIEELLW 529

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
           G    S       T      +       +L       + +  F +            +  
Sbjct: 530 GAWQRSGLADRWFTQALGSGVVAEEANRHLDAVVALFSSAKRFVERRPDAPAN----VFL 585

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            + ++  +  +T+  +     ++ +          FD +++ G+ E VWP    +   L 
Sbjct: 586 TEWLSADVAEDTLAARSI-VDSVTVGTPASVIGQEFDVVVVAGVQENVWPNLRVRGSLLG 644

Query: 666 RVMQSDL----NLKTAEKYIGQAAHDFEMANGT-----RHLIYTRSLRENNIPTIASRWL 716
                 +     L  A++       +  M         R ++ T    ++N   + S +L
Sbjct: 645 AHDLPRVLAGEKLAVADRRREVLHDELRMFAQAISRATREVLVTAVEGDDN---MPSPFL 701

Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ------------------------- 751
             +                       R+L  +                            
Sbjct: 702 TLIPSPDEPVRARPPLSLRGLVGVLRRELTTSANPGAAASSLARLAREGVPGADPSSWYG 761

Query: 752 ---PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
              P    P             S S ++   + P      ++               ++ 
Sbjct: 762 LRSPSTTAPLVDLSEPDAKVRVSPSRMESFESCPLHWAIDQLGG-------STSNTASNL 814

Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSF 867
           GTL H +               +     ++  ++ ++ E        + +H        F
Sbjct: 815 GTLIHGVAETATDFNAEALFKAVEDRWSEMSFEASWQSEAEKLRAKKLTQH-LATYLRDF 873

Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
                   +  E I   +   + +E     L+G  DR+++       I D KTG N    
Sbjct: 874 TA------NGGELISNEMGFTLPLEQA--LLSGKIDRVEMYGGTTAVIVDLKTGKNEPST 925

Query: 928 TAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
                  PQL+    A  +G+   +    +      + L    K     + K++   DE 
Sbjct: 926 DKAVADHPQLAAYQLAFASGAVEGVPEGLENGGAKLVVLSPSAKTRDYVDPKQQPMNDEE 985

Query: 987 SEKSLKNLIE 996
            E   + +IE
Sbjct: 986 LELFRQRVIE 995


>gi|88801967|ref|ZP_01117495.1| hypothetical protein PI23P_04872 [Polaribacter irgensii 23-P]
 gi|88782625|gb|EAR13802.1| hypothetical protein PI23P_04872 [Polaribacter irgensii 23-P]
          Length = 917

 Score =  211 bits (537), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 144/1016 (14%), Positives = 287/1016 (28%), Gaps = 174/1016 (17%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
               +    +P++RA   L+    +        LP   ++   V++    +   S  L   
Sbjct: 18   SFENAVFILPSQRAKVFLKQTLKDKISVG--FLPETLNIEQFVQQVSELEKADSIQL--- 72

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                     L     I+++   D             P S       A  +    + I+  
Sbjct: 73   ---------LFHFYTIYKSLEKD-------------PDSFDTFSSWAFTVLQDFNEIDQN 110

Query: 163  EKK-------WEDLHALKNEKYGMWWLLA------ADFLKIASKYWT---ERLVELNASS 206
              K         D+  LK       +           FL+  + ++      L+E     
Sbjct: 111  LLKTKEIFIYLRDIQRLKKWSVSGTFTETELMKDHYSFLEKLNHFYPPLYAFLIEKKIGY 170

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                     +   E+L K  +      G      A   L   V            LD + 
Sbjct: 171  QGLMYREACKKVDEYLEKNKRKKFFFIGFNALNKAEEFLFQKV------------LDTNN 218

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                W+       +                                           +  
Sbjct: 219  ADIYWDLDAAFFNS-------------------------------------------NHQ 235

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
                                  + N       + +I A     +       L    D   
Sbjct: 236  AGTFIRKYTKEWKYYQRNALKTLSNSFSQPKKIEVIGASKNTTQLKYAGEILENFTDF-- 293

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
            K +ALI AD  L       L +    I+I+ G PL     +S+  S+             
Sbjct: 294  KNTALILADETLLPITLNSLPKNINAINITMGYPLKDIPTTSLFFSIFQLFVSQEKLQKT 353

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A             E Y       L+  ++     S +     +  +  I  +       
Sbjct: 354  A-----------VNEFYHKDVVRFLKHQSM-HPLFSKNTQSFVTSFITEIGEENYIFIRK 401

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                    ++      L+  I    T                SI+D+ +  +  ++ +  
Sbjct: 402  KQLEVAVIKESAEVRELISSIFSPYT----------------SINDFLERILNLIRFLKE 445

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSK-IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
            +       L  E   +  +       ++       +         +LI  ET+  + E  
Sbjct: 446  EVTG----LEKEYLFRFYTVFTQLKTLQKEYEYFTDLKTLTLFFKQLIASETLSFQGEPL 501

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
              L ++G LE+R+L+F+ +IL   NEGV P  + +N F+   ++    L T  +     +
Sbjct: 502  RGLQLMGMLETRVLDFENIILTSTNEGVLPAGSQQNSFIPFDVKLAFGLPTYREKDAIFS 561

Query: 686  HDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            + F       +++    +   +       SR++ +L ++       N+    +     T 
Sbjct: 562  YHFFRLIQRAKNIFILYNTEHDAFGSGEKSRFVTQLEMMRPDIIQKNI--APKVIPSKTE 619

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
              + +  +   +R       E   +  S S +   +++P + Y +++LK+      ++  
Sbjct: 620  LKEVSKNEATLER-----LKELATKGISPSALTNYLHNPISFYKQKVLKIKEFDEVEETV 674

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPE---------INHLMKQIIDSHFEKENLPPHIDI 854
                 GT+ H  + EL +  + K                L+ +     F+  +L    + 
Sbjct: 675  AFNTLGTVVHEALDELYRPFVGKFLSLTNVVNMQKIAKDLVIKHFKLQFKNGDLKTGKNR 734

Query: 855  IWRHLFHKISHSFLEHEEKIQSS----IEKIFVNIPA--KMAIESIGI--HLTGFADRID 906
            +   + ++   +FL  E  +       ++ I        ++ IE I     L G  DR+D
Sbjct: 735  LIFEVANRFVANFLSKEIDLLQDEKNQLKIIATEENLATEITIEGIDFPIKLHGQVDRVD 794

Query: 907  LLKSGFVDITDYKTG-------DNP---KKETAQKLIDPQLSLEAAALKAGSFSQI-DCR 955
             L +G + I DYKTG         P        + L   Q+ L A               
Sbjct: 795  EL-NGVLRIIDYKTGMVAATNLRVPEFENVRDEKHLKAIQVLLYAYLFTKNKKHDFSQPL 853

Query: 956  KVANLFYIRLKQKF---KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
            +     +  L   F                  E  +  ++ L + +  +      F
Sbjct: 854  EAGIYSFKNLHSGFLAIDFAPARKAPDTNITSEKLDAFIEELKKCILEIFTPTTGF 909


>gi|205372884|ref|ZP_03225692.1| ATP-dependent nuclease, subunit B [Bacillus coahuilensis m4-4]
          Length = 1158

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 115/952 (12%), Positives = 241/952 (25%), Gaps = 134/952 (14%)

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
             ++     K + D++   +    + E +      +           L+I  + +     E
Sbjct: 113  ASDKPGFVKQVEDMLIEFKRYLVEPETIMGETESRVLSD---KLHDLEIIFREFELATKE 169

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                      + L+ +  E         I I G     P    ++  +        +   
Sbjct: 170  KYID--SEDYLTLLSSSIERSSYLKDADIYIDGFHSFTPQEYAVIQALMERTKRVTIAFT 227

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            +D                         +  P     +L    +     ++ +   S    
Sbjct: 228  IDRS-----------------------TQLPYGETKQLFRMTEESISKIESIAYSSQIQQ 264

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
               +V+         +        E +        S V ++EA N R E   IA  +R  
Sbjct: 265  DPMIVLDTQARFKSQTIAHLERHWETRPSVPSNESSYVTIVEAANPRAEIEGIAREIRRL 324

Query: 382  LDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
              E     +  AL   +      +       + I   +     +       ++ S L  I
Sbjct: 325  AREEGYRYRDIALFLRNSADYGDIIETIFYDYDIPFFMDQKRTMLNHPLIELVRSTLETI 384

Query: 438  FKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                 + A+   VK  L        K L    + LE   L          +       R 
Sbjct: 385  HSHWRYEAVFRAVKTDLLFPLDQSPKKLREKMDRLENYVLAYGIKGSSWTNKDRWRYRRF 444

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS----TCGNLSISD 552
               +        + R  E +     L +   +  +   +                L   D
Sbjct: 445  RGLELTDSPQTDEEREKEHEINELRLFISAPILRLGRRMKRGNTVRDYCISLYQFLEELD 504

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              +      Q+   D    +     ++    +  L  + +E     K +   + DI+   
Sbjct: 505  IPQKLERFAQS-ANDRGDVIAAREHDQAWNAVVDLLDQYVEILGDSKISVKRFSDILDAG 563

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            I+          +  + +     SRL N     + G+N+GV P        LS   ++  
Sbjct: 564  IETMKFSLVPPSNDQVIVADLELSRLANIRAGFVIGVNDGVLPSKFQDEGILSAEDRTSF 623

Query: 673  N------LKTAEKYIGQAAHDFEMANGTR--HLIYTRS-LRENNIPTIASRWLQRLLVLG 723
                     T+   +         A  T    L  + +   +     ++S +++R+  L 
Sbjct: 624  ANRGVQLAPTSTVKLEDEEFVAYKAFTTPSERLYISYALANDEGKALMSSPYIKRINELL 683

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK-------------RPKPFPPLEAQPRT- 769
                   + +         +K   +                    +  P           
Sbjct: 684  PNIRTQLVVQEPSELHVKFQKSYASHPTVSISYVTTQLQLGLRGYQVAPVWWDVYNYYMK 743

Query: 770  --------------------------------------YSFSEIKQLINDPYAVYARRIL 791
                                                   S S ++   + P++ +A   L
Sbjct: 744  SSHYQEKVHRILTSLFYQNRTKKLSEETSKELYGESILGSVSRMELFNSCPFSHFASHGL 803

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDS 841
            KL          +  D G LFH  +  +           K     +  ++     +++  
Sbjct: 804  KLREREM--YRLEAPDIGELFHGALKWISDMMNDQNRSWKDLNKADCRKLAQHAVEVLAP 861

Query: 842  HFEKENLPPHIDIIWRHL-FHKISHS--FLEHEEKIQSSIEKIFVNIPAK--MAIESIGI 896
              +K+ L       +       I      +  E+   S    + + +       +     
Sbjct: 862  RLQKQILLSSNRHHYIKRKLELILERASLVLSEQAKVSGFTPVGLELGFGPNGELPPFAF 921

Query: 897  HLT--------GFADRIDL-LKSGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAAL 944
             L         G  DR+D  +K     + I DYK+             I  Q+      +
Sbjct: 922  TLKNGIKMELQGRIDRVDKGVKDEQTFLRIIDYKSSQKDLDLTEVYYGISLQMLTYLDIV 981

Query: 945  -KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                            + Y  +      D +   KK  + D++ E+  K+  
Sbjct: 982  LTHSEKLVQSKGYPGGVLYFHI-----HDPLVKSKKLLTVDQIEEEIFKSFR 1028


>gi|227536349|ref|ZP_03966398.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
            33300]
 gi|227243725|gb|EEI93740.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
            33300]
          Length = 979

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 138/1099 (12%), Positives = 318/1099 (28%), Gaps = 210/1099 (19%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
            PF +E+   L+                 L    I    KR    L     EI   K    
Sbjct: 3    PFLKEVAEDLVAKFG-----------DHLQDCAIIFNNKRPATYLNQYLSEIYQ-KPFWS 50

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
            P + ++ +   +    ++   Y          +   L  L      K      ++    P
Sbjct: 51   PSVFTIQEFFAQSTHLNVADFY---------TQFFTLFNLYNELLIKESGKQIEMDKFFP 101

Query: 136  -----LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                 LS           A  L   ++ I    ++++ L   +++    +W         
Sbjct: 102  VAKTILSDFGQIDMDNVEADRLFKELEDIAVINQQFDFLTEEQHQFLSRFW--------- 152

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA-----GSTGSIPATARL 245
                         + +   ++                  +        G T       +L
Sbjct: 153  ------------TSYTEGKHKRQQENFIRMWRRMPLLYRLFHDALTAKGLTTMGQIYRQL 200

Query: 246  MSTVANHPN-------GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
                 ++P        G I+L G    +                +     +    Y L  
Sbjct: 201  AHQTCSNPQFVNNFDKGRIILVGF-NALSQTEAIVFKRWQDQGKTLFYFDTDS--YYLND 257

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
             L    +       L  + NE+  +  +I +   P                         
Sbjct: 258  PLHEAGLFLRKNIDLYGLKNELNNQCSLIDELTTPT------------------------ 293

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKK-----SALITADRNLARRVKLELTRFGINI 413
              + +   +  +A  +   L    ++ K+      + ++ AD +L       +     +I
Sbjct: 294  -TVYKVQGQTTQAKILNQVLSEDYEQLKQDPSYGQTVIVLADESLLLPTLQTIPSDEQSI 352

Query: 414  ----DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL----------VKHPLAKFGF 459
                +++ G+  +++    +    L+    +    +   L          + HPL     
Sbjct: 353  QVNLNVTMGLGYTSSSLFGLADLWLSHQVDMMSPRSAEELNVPYKTVEKFLTHPLIAVDE 412

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
             ++    A    E + +   +       +      ++                       
Sbjct: 413  KKRTQVLAAFVKEQLVVIPLERLVQQKGIFQFFFQKVRD--------------------- 451

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
            A+ L   +   +  L      + +       ++    T+  L  +     + +       
Sbjct: 452  ALSLTKELKSLLEYLAKRHLEQQNLRQLD--AELFVKTIQELNRMHDTLAQHIQT----- 504

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                            S           +I + ++  +V    +  S L ++G LE+R L
Sbjct: 505  ----------------SGNNFAPRFAAALIRKALEAISVPLSGDPLSGLQVMGLLETRNL 548

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA-NGTRHLI 698
            NFD +++ GLN+G+ P+N+  N F+   ++    L   E     +A+ F       + L 
Sbjct: 549  NFDHVVILGLNDGIIPQNSVGNSFIPDSLRRAYGLPVLENQDAISAYIFYRLVQRAQKLS 608

Query: 699  YTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
            +   SL + +     SR+L++L      +F    + + Q                     
Sbjct: 609  FVYNSLTDESNTGEPSRFLKQLEFESNFEF----RYQDQHLQIKVEDQQELVIPKTTVIM 664

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
                   +  RT S S +   I +P   + + + ++       +  +  + GT+ H  + 
Sbjct: 665  DKLGLYLSGNRTLSASALTTYIANPIDFFYKYVAEISEPEEVNEVVEANNLGTILHGAME 724

Query: 818  ELIKKRINKN---TPEINHL----MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
            +   +   ++   +PE        + ++I+ +F KE  P +   I      ++  + ++ 
Sbjct: 725  DFYNQLKAESNFISPERIAQKRKDLTKLIEHNFIKEFYPENTKKIHFTGIQRVIMAIVKE 784

Query: 871  -------EEKIQSSIEKIFVNIPAKMAIESIG-------IHLTGFADRIDLLKSGFVDIT 916
                    ++  +    + +     +  E          IH+ G  DR+D+ + G   I 
Sbjct: 785  YIHIILDHDERSAPFTILQMEEEMIVPFEFNDSYGRKQIIHMKGIIDRVDIGQDGVTRIV 844

Query: 917  DYKTGDNP-KKETAQKLID----------PQLSLEAAALKAGSFSQIDCRKVANLFYI-- 963
            DYKTG +    ++ ++  +           Q        +      I   +     Y+  
Sbjct: 845  DYKTGSDELDYKSLEEAFNTDGKKLNKALVQTLFYTYVFEKA--KNIRNVEPN--LYVVR 900

Query: 964  RLKQKF----------KIDCITNDKKKYSADELSEKSLKNLIEIVT----LLQNGEQPFI 1009
            ++K                       +  + +   +  +  +E++      L + + PF 
Sbjct: 901  KMKNGGTLFQTKVEFTDDKNKVKKADQDLSGDFLAEEKERFVELLASKLQELFDPQVPF- 959

Query: 1010 SHLRLSEKSNIQSEYDHLA 1028
              +    ++ I S Y  L 
Sbjct: 960  -RVSQHSENYIFSPYKSLM 977


>gi|311067548|ref|YP_003972471.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus
            atrophaeus 1942]
 gi|310868065|gb|ADP31540.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus
            atrophaeus 1942]
          Length = 1166

 Score =  211 bits (536), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 115/1041 (11%), Positives = 270/1041 (25%), Gaps = 151/1041 (14%)

Query: 58   QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
              L   E  +  G    I   + S   +          ++    P V++    + L +LI
Sbjct: 44   TFLMEYELAKTPGIGGMIRAQVFSFSRLAWRVLQHTGGMNR---PFVTSTGIQMLLRKLI 100

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE- 175
               + +               +    ++     + +  ++   +    + ED+  +    
Sbjct: 101  EEHKQE-------------FKVYQKASDKSGFTEQVERMLTEFKRYCLEPEDIRRMIESG 147

Query: 176  ---KYGMWWLLA--ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
                Y    +L      L I  +   + L            + L+  +  +        +
Sbjct: 148  TATDYRDERVLTDKLHDLYILYQQMEKSLENQYLH--SEDYLTLLAEQVPYAEDLKGAHV 205

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
             + G     P   R+++ +             D        + +        +       
Sbjct: 206  YVDGFYQFTPQEFRVLTQLMAQAEHVTFSLTADKPSHVQAPDELDLFRMTGKTY------ 259

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
               Y L +    L +              +  R +  +K +                   
Sbjct: 260  ---YQLHQAASELHLD-------------ITNRELTETKRYQQTPELAHLEAMYDARPAV 303

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LEL 406
               +      +++A N R E   IA  +   + +     K  A++       + +     
Sbjct: 304  PFLEKQEAFTVMQAANRRTELEGIAREIHALVRDKGLRYKDMAILARQPEDYKDMVKEIF 363

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-S 465
              + I   I     +        + S L+ I     + A+   VK  L       K +  
Sbjct: 364  ADYEIPYFIDGKASMLNHPLVEFIRSSLDVIKGNWRYEAVFRCVKTELLFPLDRPKNIIR 423

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH---WQSRLSEEDKELAVL 522
               + LE   +               V  R  +  ++            +  + ++  V 
Sbjct: 424  EQVDQLENYCIAYGIKGDRWTRGDRFVYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVP 483

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
             +  + + +    T +    +    L  +D         Q    D  R +      +   
Sbjct: 484  PLFRLQKRMKQAKTVQDMAEALYLYLEETDIPLKLDQERQRAEEDG-RIIEAQQHNQAWD 542

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             +  L  + +E     + +   +  ++    +             +F+     SR+    
Sbjct: 543  AVIQLLEEFVEMMGEDEISLSLFQQMMETGAESLKFALIPPALDQVFVGNMDLSRMYGTR 602

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR- 695
               + G N+GV P     +  LS   +       + L +  +      H    MA  +  
Sbjct: 603  CTFVIGANDGVLPARPEDDGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMALSSPS 662

Query: 696  -HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQC---------------- 737
              L  +  + +    T+  S  ++RL  L        L    +                 
Sbjct: 663  DRLYVSYPIADAEGKTLLPSTVVKRLTELFPEHQERLLTNEPEQVSDCEQLLYLVNKSVA 722

Query: 738  ---------------------YLDWTRKLDYTTK--------------QPHYKRPKPFPP 762
                                 +  +   ++   +              +           
Sbjct: 723  QSYTASQFRLWLKEYDISDVWWSAYNVLMNEPDRLNSKKLFSSLFFRNEVKPLERAVSRQ 782

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            L  +    S S ++     P++ +A   L L     F    +  D G LFH+ +  +  +
Sbjct: 783  LYGEHIHGSVSRMETFNACPFSHFASHGLHLKERQFF--KLEAPDIGQLFHSSLKLISDR 840

Query: 823  RINKNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LE 869
               +     +             ++++     ++  L  +     +    KI      + 
Sbjct: 841  LREQKLDWRDLTKDQCNKFSYEAVERLAPKLQKEILLSSNRHYYVKEKLQKIVARVSGIL 900

Query: 870  HEEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDIT 916
             E    S    + + +    K  +  +   L         G  DR+D  +S     + I 
Sbjct: 901  SEHAKASGFAPVGLELGFGGKGPLPPLTFTLKNGCTMELVGRIDRVDKAESSKGLLLRIV 960

Query: 917  DYKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
            DYK+             +  Q+      ++   +         A + Y  +      D +
Sbjct: 961  DYKSSDKGLDLSEVYYGLALQMLTYLDLSITYSADWLGMKATPAGVLYFHI-----HDPM 1015

Query: 975  TNDKKKYSADELSEKSLKNLI 995
                     DE+ ++  K   
Sbjct: 1016 IQASVPLGLDEIEQEIFKKFK 1036


>gi|317502901|ref|ZP_07960998.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315665984|gb|EFV05554.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 923

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 90/523 (17%), Positives = 175/523 (33%), Gaps = 57/523 (10%)

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
            +    +     +N   +               TL +    +I     + A+   +  +I 
Sbjct: 412  AWIVDILQEIGKNYTAEGEDAPLVHESIFRTYTLFNRLDALI-ACGDLVADFNIYNKLIN 470

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
            +LI   +V    E    L I+G LE+R L+FD +++   NEG  PK      F+   ++ 
Sbjct: 471  QLISSTSVPFHGEPIVGLQIMGVLETRNLDFDHVLVLSCNEGNMPKGVNDTSFIPYAVRK 530

Query: 671  DLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFF 728
               L T +  +   A+ F         +  T +   +   T   SR++ +L+V  G +  
Sbjct: 531  AFGLTTIDNKVAIYAYYFHSLLQRATDITLTYNKAASKTATGEMSRFMLQLMVESGQNIH 590

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                   Q  L         + +    + +       Q    S + I   +      Y R
Sbjct: 591  FKNLNASQNPLQ--------SIKKPIVKNQEVMRNIYQTDRLSPTAITTYLRCQMRFYYR 642

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN---------TPEINHLMKQII 839
             I  +    + + + D    G +FH       + + NK+           +   L+ +II
Sbjct: 643  YIAGIKEPDNEEDEIDNRIFGNIFHRAAELFYESKCNKDVVQKQDIINALKDKSLLPRII 702

Query: 840  DSHFEKENL---------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
            +  F ++              + II R +  +     L  ++K+      + +  P +M 
Sbjct: 703  EEAFREKLFNVKDDKNITYNGLQIINRQVIIEYIKRLLAIDQKLTP-FSILGLEKPIEMP 761

Query: 891  IESIG------IHLTGFADRID-LLKSGF--VDITDYKTGD--NPKKETAQKLIDP---- 935
             +         I L G  DRID + ++G   + + DYKTG       ++   + +P    
Sbjct: 762  FDINTQEGLKQISLFGNIDRIDKIDENGSTCIRVVDYKTGSNDKTSIKSVDDIFNPEKIE 821

Query: 936  -------QLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITN--DKKKYSADE 985
                   Q  L +  L        +   V+ +L +I+         I             
Sbjct: 822  SHSDYYLQALLYSIMLYNNRNLNPNHLPVSPSLLFIQHATGDDYTPILKFGKDIITDVSI 881

Query: 986  LSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             +E  L  L E++  + N +  F  +   + K      Y  + 
Sbjct: 882  YTEDFLTKLKELIEDIFNPDIAF--NPTENTKRCQYCPYREIC 922



 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/441 (12%), Positives = 123/441 (27%), Gaps = 91/441 (20%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F + +   +L+    +           L+ +TI  P KRA   L  E + ++  K    P
Sbjct: 4   FLQYVAEDILHKYGTD-----------LSRITIIFPNKRASLFLNEELVRLS-NKPLWSP 51

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL-------ELARLILIWRNKLPDIIKD 129
              ++ ++     +  +     L   + ++ ++        E       W   L     D
Sbjct: 52  NYLTISELFRAHSSKSVGDQIKL---ICDLHKIFNECTGSDETLDHFYGWGQVLLADYDD 108

Query: 130 LYPESPLSLPI--------SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
           +      +  I           +A +L     +++          ED+ +   E++   W
Sbjct: 109 IDKNMGDAHLIFKSIKDIHEFDDASYLNDEQKELLKKFFANFT--EDITSKLKERFINLW 166

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                  +     + ERL +   +        ++  E    +       I  G       
Sbjct: 167 SN----FEEIYTKFNERLSQQGLAYEGALYREVVGKE---QLDFHSDIYIFVGFNMMQTV 219

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
             +L   +                     W+      +          T+ +  L    +
Sbjct: 220 EQKLCERLLKQGK------------AKFYWDFDDYFMSEKHGLKHEAGTYIRQYLKYFPN 267

Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
            LD   + +                                           +   D+  
Sbjct: 268 ELDTTDKAIYCN---------------------------------------FERPKDITY 288

Query: 362 IEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
           + A  E  +A  I+  L+        +++A++ AD NL   V   L+     ++I+ G P
Sbjct: 289 LSATTENIQARYISTWLKDPKRVAAGRRTAIVLADENLLPTVIHCLSPNLKYVNITTGYP 348

Query: 421 LSTTLHSSILTSLLNAIFKLN 441
           L  T  +S +  L+       
Sbjct: 349 LQHTPIASFVRLLVMLQTMGY 369


>gi|254478457|ref|ZP_05091834.1| ATP-dependent nuclease subunit B [Carboxydibrachium pacificum DSM
            12653]
 gi|214035628|gb|EEB76325.1| ATP-dependent nuclease subunit B [Carboxydibrachium pacificum DSM
            12653]
          Length = 1200

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 130/939 (13%), Positives = 267/939 (28%), Gaps = 127/939 (13%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
               K +++ I   +  +     L     +   +      + L +    + E L   N   
Sbjct: 158  GFVKKISEAITEFKRFDVTPFQLIDASEKIEKLGLKEKLEDLALIYSSFEEVL-HKNYID 216

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                   L +   + L         I G TG  P   +++  +    +   V   LD  I
Sbjct: 217  EEDELDLLSKKLEKSLQ-FEGAEFWIDGFTGFTPKQYKVIEKLLKKASRVSVTLTLDPSI 275

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                               +   TH  Y+  K  + L    +  +  G    E    +  
Sbjct: 276  D------------------SIDPTHLFYTTKKTEEKL---IKICETNGISVEEPVNLNKG 314

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
            I K F           +   +      +   ++++ +A N   E   +A  +   + +  
Sbjct: 315  IPKRFEHNKELAFLEKNFFSHPYEIYNEETKNISIFKATNMYSEVEEVARDIARLIRDEH 374

Query: 385  -NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                   + T D +   + VK   + +GI   I   I ++       + S+     K   
Sbjct: 375  MRYSDIVVATKDLKRYYKLVKAIFSHYGIPHFIDLKINITNNPIIVYVISIFEIYLKNWS 434

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            + ++   +K         E  L       E   L          +     +D        
Sbjct: 435  YESVFRYLKTGFTGIDKEEINLL------ENYVLANGIKGNKWKERWEYRIDYKTDSLLM 488

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                        E +E   L ++      +     K         L  +   +     ++
Sbjct: 489  EEREKQIINKVNEVRERVYLPLEKFYTRFSHSKNVKEACEVLYDFLVENKLPEKIEKFIE 548

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                          + +    +  +  +++E     K +  ++  +I+   D   +    
Sbjct: 549  EFKNRGE-FDTANQYAQIWDIVVDVLDQMVEVLGEEKISLEQFARLISIGFDEYQIASIP 607

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-------SDLNLK 675
                 + +      +  N   L L G N+GV+P ++ +    S   +        +L+  
Sbjct: 608  PALDEVLVTSVDRMKSHNSKVLYLLGANDGVFPASSFEEGIFSDEERNLLSSLDLELDRD 667

Query: 676  TAEKYIGQAAHDFEMANGTRHLI-YTRS-LRENNIPTIASRWLQRLLVLGG--------- 724
            T  K   +    +         +  +             S  + RL  +           
Sbjct: 668  TKAKVFEEQFLVYTALTSASEFLKISYPIADHEGRSLRPSIIISRLRRIFPKIKVSTNIV 727

Query: 725  --TDFFDNLKKRGQCYL---------------------------------DWTRKLDYTT 749
                  +NL +                                       +W +KL+ T 
Sbjct: 728  EMDTDEENLNRVTVPLPTFNEMIKSFKKWNITGKIHPIWLEVYKWYRTKDEWKKKLEDTL 787

Query: 750  K------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
            +      Q     P     L  +   +S S +++    P+A + +  LK           
Sbjct: 788  EGFVYDNQIKRIPPLKIKKLYGEEMEFSVSRLEKYAACPFAYFVQYGLKAKERK--IYGF 845

Query: 804  DRTDRGTLFHNIITELIKKRINK-------NTPEINHLMKQIIDSHFEK---ENLPPHID 853
            +  D G   HN++ E+ K    +       +    N  +  I++   +K     L     
Sbjct: 846  EPPDLGIFMHNVLNEIAKALEKEELTWQEIDKEWCNDAVDIIVEEMVDKIPGYILKSSSR 905

Query: 854  IIWRH-LFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAI---ESIGIHLTG 900
              +      ++     ++  E   +SS   +   +          + I       I L G
Sbjct: 906  YRYLANRLKRVLSKAVWIISEHMKRSSFVPLGHEVAFGENQKYPPIKIVLSNGEEIKLIG 965

Query: 901  FADRIDLLK-SGF--VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
              DR+D+L+  G   V I DYK+G            ++ QL +   A+   +F       
Sbjct: 966  RIDRVDVLEKEGETYVRIIDYKSGDKTLDLSDVLYGLELQLLVYLDAILESAFEGKANLS 1025

Query: 957  VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
             A +FY ++      D I    K  S +EL ++ +K L 
Sbjct: 1026 PAGIFYFKID-----DPIVRADKDISDEELYKEIMKRLR 1059


>gi|20806784|ref|NP_621955.1| ATP-dependent nuclease [Thermoanaerobacter tengcongensis MB4]
 gi|81482923|sp|Q8RCZ1|ADDB_THETN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|20515246|gb|AAM23559.1| ATP-dependent nuclease [Thermoanaerobacter tengcongensis MB4]
          Length = 1159

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 130/939 (13%), Positives = 267/939 (28%), Gaps = 127/939 (13%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
               K +++ I   +  +     L     +   +      + L +    + E L   N   
Sbjct: 117  GFVKKISEAITEFKRFDVTPFQLIDASEKIEKLGLKEKLEDLALIYSSFEEVL-HKNYID 175

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                   L +   + L         I G TG  P   +++  +    +   V   LD  I
Sbjct: 176  EEDELDLLSKKLEKSLQ-FEGAEFWIDGFTGFTPKQYKVIEKLLKKASRVSVTLTLDPSI 234

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                               +   TH  Y+  K  + L    +  +  G    E    +  
Sbjct: 235  D------------------SIDPTHLFYTTKKTEEKL---IKICETNGISVEEPVNLNKG 273

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
            I K F           +   +      +   ++++ +A N   E   +A  +   + +  
Sbjct: 274  IPKRFEHNKELAFLEKNFFSHPYEIYNEETKNISIFKATNMYSEVEEVARDIARLIRDEH 333

Query: 385  -NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                   + T D +   + VK   + +GI   I   I ++       + S+     K   
Sbjct: 334  MRYSDIVVATKDLKRYYKLVKAIFSHYGIPHFIDLKINITNNPIIVYVISIFEIYLKNWS 393

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            + ++   +K         E  L       E   L          +     +D        
Sbjct: 394  YESVFRYLKTGFTGIDKEEINLL------ENYVLANGIKGNKWKERWEYRIDYKTDSLLM 447

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                        E +E   L ++      +     K         L  +   +     ++
Sbjct: 448  EEREKQIINKVNEVRERVYLPLEKFYTRFSHSKNVKEACEVLYDFLVENKLPEKIEKFIE 507

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                          + +    +  +  +++E     K +  ++  +I+   D   +    
Sbjct: 508  EFKNRGE-FDTANQYAQIWDIVVDVLDQMVEVLGEEKISLEQFARLISIGFDEYQIASIP 566

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-------SDLNLK 675
                 + +      +  N   L L G N+GV+P ++ +    S   +        +L+  
Sbjct: 567  PALDEVLVTSVDRMKSHNSKVLYLLGANDGVFPASSFEEGIFSDEERNLLSSLDLELDRD 626

Query: 676  TAEKYIGQAAHDFEMANGTRHLI-YTRS-LRENNIPTIASRWLQRLLVLGG--------- 724
            T  K   +    +         +  +             S  + RL  +           
Sbjct: 627  TKAKVFEEQFLVYTALTSASEFLKISYPIADHEGRSLRPSIIISRLRRIFPKIKVSTNIV 686

Query: 725  --TDFFDNLKKRGQCYL---------------------------------DWTRKLDYTT 749
                  +NL +                                       +W +KL+ T 
Sbjct: 687  EMDTDEENLNRVTVPLPTFNEMIKSFKKWNITGKIHPIWLEVYKWYRTKDEWKKKLEDTL 746

Query: 750  K------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
            +      Q     P     L  +   +S S +++    P+A + +  LK           
Sbjct: 747  EGFVYDNQIKRIPPLKIKKLYGEEMEFSVSRLEKYAACPFAYFVQYGLKAKERK--IYGF 804

Query: 804  DRTDRGTLFHNIITELIKKRINK-------NTPEINHLMKQIIDSHFEK---ENLPPHID 853
            +  D G   HN++ E+ K    +       +    N  +  I++   +K     L     
Sbjct: 805  EPPDLGIFMHNVLNEIAKALEKEELTWQEIDKEWCNDAVDIIVEEMVDKIPGYILKSSSR 864

Query: 854  IIWRH-LFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAI---ESIGIHLTG 900
              +      ++     ++  E   +SS   +   +          + I       I L G
Sbjct: 865  YRYLANRLKRVLSKAVWIISEHMKRSSFVPLGHEVAFGENQKYPPIKIVLSNGEEIKLIG 924

Query: 901  FADRIDLLK-SGF--VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
              DR+D+L+  G   V I DYK+G            ++ QL +   A+   +F       
Sbjct: 925  RIDRVDVLEKEGETYVRIIDYKSGDKTLDLSDVLYGLELQLLVYLDAILESAFEGKANLS 984

Query: 957  VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
             A +FY ++      D I    K  S +EL ++ +K L 
Sbjct: 985  PAGIFYFKID-----DPIVRADKDISDEELYKEIMKRLR 1018


>gi|290968023|ref|ZP_06559572.1| putative ATP-dependent nuclease subunit B [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781929|gb|EFD94508.1| putative ATP-dependent nuclease subunit B [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 1124

 Score =  210 bits (535), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 121/1014 (11%), Positives = 263/1014 (25%), Gaps = 169/1014 (16%)

Query: 55  RAIQELR---------SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           RA   L              E    K      +     +                  VS 
Sbjct: 30  RAALFLVPDQATYTMERRLAERMPGKGYTGIQVVGFSRLAYLVLQERGCKR----AAVSE 85

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           + R+L L RL+    ++L             ++    A     ++ +   I+   +    
Sbjct: 86  LGRMLVLQRLLRQMESEL-------------TVLRKAAVQPHFSETVGTFIEECRSFCVS 132

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
              L A+               +    + +T  L            +  + AE ++    
Sbjct: 133 PAALQAVATTVSDPSLADKLQDIARVYEAYTRVLTAR--FGNADDLLTALAAEIKYAGFL 190

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
              P+++ G     P   +++  +  +     V   LD                     N
Sbjct: 191 QHIPVLVDGFQWFTPQQLQVLEQLEKYAGSLTVTLSLD-------------------GEN 231

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                       +  +     R                S  I       + +        
Sbjct: 232 LASQAGETALFHRSYETYGALRRLFPH-----------SEQICLPPRLTNGAARMAHAFF 280

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---SALITADRNLARRV 402
                   +  + + + E  ++  E   +A  +     +  +      ++       +  
Sbjct: 281 RPVPAVRSRATAGIHIWECTSKEAEIEGVAKKIIQLCRQGYRYKDFLLVVRTSEEYNQLA 340

Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
           +   + + I +      P+++      + SLL        + A+  L+K  L      + 
Sbjct: 341 ERIFSMYRIPLFSDYQRPMASHPIVETVVSLLQVFRTSWTYEALFQLLKSDLFPISRDDA 400

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                               Y I   + L          +       +R+  + ++L + 
Sbjct: 401 DALENYCLA-----------YGIQGGQWLADKAWYDDGTDARTASGINRIRRQVRDLLLP 449

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
                    T L T+ T   +    L +    +           D          E+  K
Sbjct: 450 CWQESRSSHT-LQTWCTLLYTWLKRLQVPATLRRWRQ----EDADAGCPGEAKEHEQVWK 504

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
            L +   +I+      +    ++  I+   +              + +        L   
Sbjct: 505 ELLAFLQEIVTLCGEEEMGLEDFAVILEDGLKTLKFSLIPPTLDHVTLTSVERGYTLQGK 564

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTR- 695
           T+ + G+N+G++PK   +        +  L          +     Q  + F +A     
Sbjct: 565 TVFICGMNDGIFPKRNREEGLFHDGERQQLEKAGLYLAPGSRFRSLQEKYLFYLAVTRSL 624

Query: 696 -HLIYTRSLREN-NIPTIASRWLQRLLVLG------------------------------ 723
             +  T +L +        S W+++LL  G                              
Sbjct: 625 QEVYLTYALADESGAAREPSLWIRQLLERGYVDGVRTVSDGISPGEEAAAITSAEAAVRL 684

Query: 724 GTDFFDNLKKRGQCYLDWTRKLDY--------------------TTKQPHYKRPKPFPPL 763
                      G+    W    D                         P           
Sbjct: 685 LPGQLQPAVDGGEVAPVWWALYDQLLRTSQKQAVRQAVRGLFHTNVAAPLTASVVRRLFA 744

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                  S ++ +Q    P+A +AR  L+L+     +      D G L H  +  +    
Sbjct: 745 PQGILHGSVTKFEQYGTCPFAFFARYGLQLEARQ--RYRFVAPDLGLLVHGALKYMGDAL 802

Query: 824 INKNTPEINHLMKQIIDSHFEK-ENLPPHID-------IIWRHLFHKISHSFLEHEEKIQ 875
           + +     +  M+QI +   +  E   P +          +RH+  ++  + +    +++
Sbjct: 803 LREGKQWRDLEMRQIPEYCRQATEVTAPSVRQDILMSNAYFRHIKERLIQTLIRTVRRLR 862

Query: 876 SSIEKI-----FVNIPAKM----------AIESIG-IHLTGFADRIDLLKSGF---VDIT 916
              E        + I               + S G + ++G  DR+D+L+ G    V + 
Sbjct: 863 EFSEVSNFQMKGLEIAFGGKNGVWEPLQFTLPSGGKVSISGQIDRLDMLQEGEISYVAVI 922

Query: 917 DYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969
           DYK+G   P  +     +D QL             +      A + Y  ++   
Sbjct: 923 DYKSGRKEPALQPVFLGLDLQLLTYMIVALRQLGEK---AVPAAVLYCYVRDDK 973


>gi|84494609|ref|ZP_00993728.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
 gi|84384102|gb|EAP99982.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
          Length = 1047

 Score =  210 bits (535), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 131/1032 (12%), Positives = 278/1032 (26%), Gaps = 124/1032 (12%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
             +   L+   + +  R D           +   ++R    LR +     G  ST  P+ +
Sbjct: 45   TIAVELVAAHVADGVRPD--------QCLLLASSRRDAARLRDQVTARVGGTST-EPLAR 95

Query: 80   SLGDVVEEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
            +          A   L  +  P + S  ++ + L  L+    +        + P  P  +
Sbjct: 96   TFPSFGFGVLRAAAALDGDPPPRLLSGPEQDVVLRELLAGHASGE-----SVGPRWPERV 150

Query: 139  PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
             +           L D++          +DL  L        W+  A+ L+   +     
Sbjct: 151  KL-ALPTRAFRAELRDLLMRAVELGLDPDDLLELGVRHGRDEWVAGAELLREYDEV--TA 207

Query: 199  LVELNASSPVG-----YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
            L+   A  P               +    +      +++  +    PA  RL+  + +  
Sbjct: 208  LLTPGAFDPAWILGAAASALAGDDDLARSLTAGLRLVVVDDAQEMTPAALRLLEVLRHVA 267

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
              A ++   D    T  +                                     +   L
Sbjct: 268  PAAGIVLIGDPDSATQTFRGGDPTLLA---------------------------REWAVL 300

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF---SDVALIEADNEREE 370
            G+    +  RS  + +  L    +   +  +L +      +         +    +  +E
Sbjct: 301  GDGPTVVLPRSHRLPEGLLSVTNAVAGHIGVLGDVAHRRAEACVEGGSSEVHLLRSASQE 360

Query: 371  AISIAIALRMSL---DENKKKSALITADRNLARRVKLELTRFGINI-DISAGIPLSTTLH 426
            A  IA  LR +    D      A+I   ++ +  ++  L   G+ +    A +P+     
Sbjct: 361  AGFIAARLRAAHLLDDVPWSDMAVIVRGQSRSAGLRRALQSSGVPVSAAEAELPVRDEPS 420

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
               L +LL  +  L    A    V   L     P       +      ALR  +      
Sbjct: 421  VRPLLTLLQVVADLALGRAEDVPVDVALDVLVSPLGAADPVELRRLRRALRREELDAGGS 480

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
                 ++  +  +         + R  +    +    V+             + +     
Sbjct: 481  RTSDELIAEVLLRPAVHDRLGIEGRSVQRIGRMIRAGVEACGAVEGEWGPGVSAEGILWA 540

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                S                  R   +L         ++ + + +   S          
Sbjct: 541  MWDASRLAGQWRETALGGGAAGARTDRDLDAVLAVLRAAATYGERLPGSSPEAF----LQ 596

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             ++ + + G+T+  +     ++ +L    +    +  +++ G+ EG WP    +   L  
Sbjct: 597  HVLGQDVPGDTLAARAPTGESVSLLTPQSAAGRQWPLVVVAGVQEGSWPDLRLRGSLLGS 656

Query: 667  VMQSDL---NLKTAEKYIGQAAHDFEMAN-----GTRHLIYTRSLRENNIPTIASRWLQR 718
                D+           +    HD               +   ++R  +        +  
Sbjct: 657  QDLVDVVRGRAGGHRAALAAVRHDETRLFHVAVSRASRSLLVTAVRSEDEQPSPYLDVVD 716

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR----------------PKPFPP 762
             L         +   R          L         +R                P   P 
Sbjct: 717  PLPDDADRREASDWARPVTLPALVGALRRDVVSDDMRRRGGAITGLARLARAGVPGADPA 776

Query: 763  LEAQPRTYS---------------FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                    S                S I    +        ++     +        + D
Sbjct: 777  SWWVLHGLSDERPRRGPADPVRVGPSAIDGFTSCQLKWALTKVGGDGPM------IGQRD 830

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL-FHKISHS 866
             GTL H I  E                M+  +D  + +  LP       +      +   
Sbjct: 831  IGTLIHEIAAE---------GDADAATMRATLDERWPRLGLPQGWSTDLKRRQAEGMVDR 881

Query: 867  FLEHEEKIQS-SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-P 924
                 ++  +   +++      K+ +    I L+G  DR+D+  SG V + DYKTG + P
Sbjct: 882  LARFFDENTAVGWQRLAAESRMKVEL--GRIVLSGTVDRLDVSPSGEVRVIDYKTGSSKP 939

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
            K     +    QL     A+  G F  ++  +  +    + + +          +   + 
Sbjct: 940  KASDVPRHG--QLGAYQLAVIEGGFEDVEVPQSSSGAALLHVGKAAGKATTMQVQPPLAE 997

Query: 984  DELSEKSLKNLI 995
            DE      + LI
Sbjct: 998  DE-DPGWAERLI 1008


>gi|134093953|ref|YP_001099028.1| hypothetical protein HEAR0707 [Herminiimonas arsenicoxydans]
 gi|133737856|emb|CAL60901.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 854

 Score =  210 bits (535), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 145/993 (14%), Positives = 277/993 (27%), Gaps = 149/993 (15%)

Query: 50   YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
             V T   IQ L++         + I P + SL + + +       L  +     +  +RL
Sbjct: 2    LVSTFAHIQLLKNALARQIDG-AFIPPTMTSLSEYIRQ-------LPPDGATATAASERL 53

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            + L              ++       L       + + LA+ L  + D +          
Sbjct: 54   MSLY-----------ADLRQHAWLKKLFSARRNTDLLPLAEILLALSDELTQAMLPS--- 99

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
                 +     W  A + L   ++           S        + +++ +         
Sbjct: 100  LKASPDAGYARWQAALEQLSPVARNL--------LSDETQLVWTIWKSQLDASDANVIRY 151

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
                          RL+  V +       +  +        +         +T     + 
Sbjct: 152  ----------AQMMRLVQQVEHIQQPLFWISPVAPDAMEQAFLDAYGARQALTVLTLDWH 201

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
             H                                             +         +  
Sbjct: 202  AH-------------------------------------SVHSTYAAAWPEMLVDEMDSA 224

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
                     + L  A N   EA + A  +   L + K   A++  DR +ARR++  L R 
Sbjct: 225  ALSLATPPGLKLHAAQNMEAEARAGAQTVIDWLQQGKTNIAIVAQDRVVARRIRALLERA 284

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
             I +    G  LSTT  +S + + L  +    + + +   +K P       +K       
Sbjct: 285  QIVVADETGWKLSTTRAASAIAAWLELVAARAETVGLLDFLKSPFVFADMADKAELVMV- 343

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                                        ++             +  D   A      ++ 
Sbjct: 344  ----------------------------SEIALQRAKVLSGWEAVSDALTAAPAAQKMMT 375

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             +              G  ++ +W   T   L  +          L  +  G  L  L  
Sbjct: 376  LLA------QQAAGFTGRKTLCEWIAATQQMLVTLG-----MRDALQADAAGAQLLQLLQ 424

Query: 590  KIIETG--SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
             + +         +  EW   +   ++ +      +    + +L    +RL +FD ++L 
Sbjct: 425  DVAQDCVQVGHTFSFAEWRAFLNLQLEAKAFVQVNQDK-RVVMLPLNGARLRSFDAVLLV 483

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLREN 706
            G +    P    +  F + V++ +L L T E    Q   D          ++ +    +N
Sbjct: 484  GADAEHLPSQPMETLFFANVVRRELGLATRESRQRQQLRDVTELLSANDCVVLSWQAHKN 543

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
              P   S W++RL +         L           +      +      P P  P    
Sbjct: 544  GEPNPVSPWIERLELCLARACLAPL------AKHEVQIAPRHLQPTPVLMPAPAAPQLL- 596

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
            P+  S S    L+  PY  +A R+L L  I      P++ D G   H I+ +  +     
Sbjct: 597  PQKLSASGYNSLVACPYQFFATRMLGLSGIDDVSDMPEKRDYGDWLHKILAQFHQTLQEA 656

Query: 827  --NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFV 883
                 E   L++QI D  F  E       + +   + K   ++LE   + +S     +  
Sbjct: 657  PVPLAERAPLLQQISDRIFAHELDKSAAALGYYARWQKAMPAYLEWIAERESQGWHFVLG 716

Query: 884  NIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYK-TGDNPKKETAQKLIDPQLSLE 940
                +  +  E   I L G  DR+D   SG   + DYK T     ++  ++  D QL   
Sbjct: 717  EEKFEKLLRWEDGEIVLHGRVDRMDENASGERAVLDYKSTNQGALRDKLRQGEDHQLPFY 776

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
                       +    ++   Y+ L+                  +  E+      +IV  
Sbjct: 777  GL---------LSGTALSAALYVPLEATRDKIKEVEAPDYEVWQQNLEE------QIVRN 821

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033
            +Q             E      +   L R   W
Sbjct: 822  MQAITHGAPLPATGPEPVCQYCDVRGLCRKGAW 854


>gi|270159331|ref|ZP_06187987.1| putative exonuclease [Legionella longbeachae D-4968]
 gi|289165849|ref|YP_003455987.1| hypothetical protein LLO_2529 [Legionella longbeachae NSW150]
 gi|269987670|gb|EEZ93925.1| putative exonuclease [Legionella longbeachae D-4968]
 gi|288859022|emb|CBJ12950.1| hypothetical protein LLO_2529 [Legionella longbeachae NSW150]
          Length = 861

 Score =  210 bits (534), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 90/709 (12%), Positives = 218/709 (30%), Gaps = 99/709 (13%)

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN-LARRVKLELTRF 409
            ++++  S + ++ A +++EE   + + L + L E   +  ++  +    +  ++  LT  
Sbjct: 219  DLKEKSSKIEMLAAQDDKEEYQQLMLWLHLKLQEGNHRIGVVVPNLEKESNLLQRILTNH 278

Query: 410  GIN--IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
                  +IS G PLS     +     LN           + L++ P   +   E      
Sbjct: 279  FEPTLFNISLGQPLSDFPLVAHALCWLNLDDFTLSQHQASLLLQSPYLGYSKEEFIGRAE 338

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
                 ++  R                                              ++ +
Sbjct: 339  YLQEGILLERHVI--------------------------------------PLKDFINEL 360

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                  L    +   +     +  +W  L    L+ +       L +  ++   + ++  
Sbjct: 361  HYYTPKLSQLLSLLIAYPAMATPQEWVCLFQDRLRVMGFPGDYGLNSENYQCLNRFITLF 420

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
                            E ++     +   T+    + ++ + + G LE+    FD+L + 
Sbjct: 421  DEFRQLAVFNTNLTKAEALEAFHH-LTHHTIFQAQKNNAPIQVTGLLEASGCEFDSLWVM 479

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMAN-GTRHLIYTRSLR 704
            GL +   P     + F+   +Q +L++     E+ +  A    +        ++++    
Sbjct: 480  GLTDQCLPNKVRLSAFVPSYLQRELSMPHSLPERELQFARQILQRLQKSADSVVFSFPQL 539

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
            + + P +    +            ++   + +                  +     P L 
Sbjct: 540  QGDNPNLPCSLITTFPHFTLLPEPNSSIYQPKYIT--------------VEEHFSLPVLP 585

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
             +  T   + +      P+  +A   L+           +  +RG L H ++  L +   
Sbjct: 586  EERITGGTAILSNQAKCPFKAFAEHRLRAKAPLQTTDGLNHQERGKLIHKVMELLWQALE 645

Query: 825  --NKNTPEINHLMKQIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEK 873
               K      H++ + ID               +L   +  +      ++ +++LE E++
Sbjct: 646  SQEKLKLLAPHIVDRYIDEAIHTALSHLNQRINSLSASLQEVESARLKRLIYTYLEWEKQ 705

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-ETAQKL 932
                     +     + +  + I +    DR+D +      + DYK+     K    ++ 
Sbjct: 706  RAP-FTIAALEHSYSINLAGLDIQV--RIDRLDQVADKKW-VIDYKSTLPTSKPWHEERP 761

Query: 933  IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKY 981
             +PQL L A              ++     ++LK               I+ IT+ KK  
Sbjct: 762  KEPQLLLYALL----------DDQINTFLLMQLKSGKIYCAGLSEEKQAINGITSLKKDE 811

Query: 982  SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
            +  E  +   K L  +    Q   Q +            + +Y +L R+
Sbjct: 812  TWTECRKTWQKQLTHLAMEFQ---QGYCPPQPAHLSICQRCDYQNLCRI 857


>gi|297616710|ref|YP_003701869.1| ATP-dependent nuclease subunit B [Syntrophothermus lipocalidus DSM
            12680]
 gi|297144547|gb|ADI01304.1| ATP-dependent nuclease subunit B [Syntrophothermus lipocalidus DSM
            12680]
          Length = 1147

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 119/969 (12%), Positives = 262/969 (27%), Gaps = 131/969 (13%)

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
            P + +  + + L RL+   R++L    +              A        LA  I  ++
Sbjct: 85   PFLGDNGKRMVLCRLLEENRHRLKAFAR-------------VAKQPGFYDRLAQAIGELK 131

Query: 161  TEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
                K EDL   L + +           L +  + + + L E     P  Y     R   
Sbjct: 132  AYHVKPEDLQQVLASWQGESLAKDKLADLLVIYRGFQQVL-EGRLIDPDDYLDFCARKIG 190

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
            E         + + G  G  P    ++ ++    +    L  LD               T
Sbjct: 191  ESQTC-QGSEVWVDGFKGFTPQEYEVLVSLLKTSSRVNFLLCLDPG-----------ALT 238

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                    +          L        E    L    N +       + + L  +    
Sbjct: 239  KTVKREEVFFCTYNTYTRLLQIANRAGVEVEPALILGENGLPRFRENEALAHLEREFPAW 298

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKKKSALITADR 396
                               + L+ A++ R E  ++A  +       +   +  A++  D 
Sbjct: 299  PGRVFSGKV--------QGLKLVAAEDRRAEVEAVAREILALCREREYRFRDIAVLVRDL 350

Query: 397  NLA-RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            ++    V      +G+   + +  P+++     ++ S L  +     + A+   +K  L 
Sbjct: 351  SIYGELVPQVFQVYGLPCFVDSRRPVTSYPLIELVRSALEVVLSGWSYEAVFRFLKTDLV 410

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                 E            +  +G++ +   +                T      +R+ E+
Sbjct: 411  PVSREEVDELENYVLAHGI--KGSRWADGKLWAYRRRYSLGEEDPEETADLARINRIREK 468

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                     + +    T   +           L +    +      +     E       
Sbjct: 469  AVAALAWFEEQVKNSPTA-GSVTRALYLLLEQLGVRKELEAWSRAAEAEGRLEE----AA 523

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
               E       L  ++++       +  E++ ++   + G T+         +F+     
Sbjct: 524  EHAEVYNQFLGLLDEMVDALEDYPVSLEEYLRVLDAGLGGLTLGLIPPGLDQVFVGSLER 583

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL-------KTAEKYIGQAAHDF 688
            SR        + G+N+GV P+   ++  LS   +++L +          E+   +    +
Sbjct: 584  SRPSEVKAAFILGVNDGVLPQPPRRDGLLSEKERAELAIFGVELAPGRQERLFEEQFLVY 643

Query: 689  EMANGTRH-LIYTRSLRENNIPTI-ASRWLQRLLVL--------------GGTDFFDNLK 732
                     L  +    +     + AS  + RL  +              GG      + 
Sbjct: 644  TGLTRASEYLWVSYPRADEEGRAMNASPVIDRLREVFPSIEVATVSLEPPGGAGDLAYVA 703

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT----------------------- 769
              G+       +L                    +                          
Sbjct: 704  VPGRALSFLAARLREAGSLGALDPVWAGAYKWLKKNHTQALHRVLEGFFYRNEEQPLGGD 763

Query: 770  -----------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                        S S+++Q  + P+A + R  L+              D GT FH+ +  
Sbjct: 764  LAQRLYGYPLHLSVSQLEQFASCPFAYFIRYGLRAKEKET--AKIRPADLGTFFHDALKR 821

Query: 819  LIKKRINKNT-------PEINHLMKQIIDSHFEKENLP----PHIDIIWRHLFHKISH-- 865
             +++   +          E   L  +I+                          +I    
Sbjct: 822  FVEEVKIRRLAWETVGRDECRELADEIVSEMVTAMESEMQTLSERRRYLVSKLKEIVEVS 881

Query: 866  SFLEHEEKIQSSIEKIFVNIPAK------MAIESIGIHLT--GFADRIDLLKSGF---VD 914
            ++   E         + + +         + ++   + L   G  DR+D   +G    + 
Sbjct: 882  AWAVAEHLACGDFRPVGLELEIGRNGIPPLVVDDGDVKLKLVGKVDRVDAAPNGEGVYLR 941

Query: 915  ITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+G    K +     +  QL     A ++  +         A +FY  +K      
Sbjct: 942  VIDYKSGSTGFKLDEVYYGLRLQLIAYLDAVVENAAVLWGKEAVPAGVFYFEVKNPLIQG 1001

Query: 973  CITNDKKKY 981
             +   +K  
Sbjct: 1002 NVDGPEKAE 1010


>gi|291562494|emb|CBL41310.1| ATP-dependent nuclease subunit B [butyrate-producing bacterium SS3/4]
          Length = 1182

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 122/1027 (11%), Positives = 278/1027 (27%), Gaps = 136/1027 (13%)

Query: 49   IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
            +  P +  +Q  + E + +     T+   I S   +    F+   L        + +  +
Sbjct: 36   VVTPEQATMQA-QKEIVRLHPNHGTLNIDIVSFERLAYRIFSELSLPQ---PEVLDDTGK 91

Query: 109  LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
             + L RL     ++L             ++  S  N       +  ++  +       ED
Sbjct: 92   NMVLRRLAGEKMDEL-------------TMFSSHLNRPGFISEIKSMLSELYQYGATPED 138

Query: 169  LHALKNEKYGMW-WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
            L A    ++           +++  + + E   E   +  +   + ++   A+       
Sbjct: 139  LKAQTAGEHVGQILAAKLSDMEVIFEAFREFTKEKYIT--LEELLDVLCQVADQSALLKD 196

Query: 228  GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
              +++ G TG  P   RL+  +        V           +     E      S   T
Sbjct: 197  STMVLDGYTGFTPVQYRLIGILLKLCRNVFVTVSATMEPGMDLTAESDETDLFDMSRKMT 256

Query: 288  YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                    L +L +      +  + L      +          F      D         
Sbjct: 257  GK------LKQLAEENGA--KIYQDLVFSKRPLVR--------FRNSPALDHLERTFFRY 300

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK- 403
                      ++ L++A +  +E   I   +   + ++    +  AL+  D     R   
Sbjct: 301  PYTRYHGGEREIMLVQAKDPADEIDFITNRIEELVKKDGYRYRDIALVCGDLPGYGREIT 360

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
                   I + +     +S      ++ S L+ + K  D+ ++   ++  L         
Sbjct: 361  RSFEENRIPLFLDENRDVSGNPLIRLIQSALDILQKGFDYESMFRYLRTGLVTEETEAVD 420

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                      +      +                 +          +   E+  E   +L
Sbjct: 421  RLEIYVRAMGIRGFAKWD----------AAWEKTFEGGENLNLVEMNAFREKIMEPLRVL 470

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
             +       P+             L   +  +       +  +D   +     +EE    
Sbjct: 471  RERCAGRGVPVAVVTDALKELLETLGAEEKLEQFSERFADSGMDREAR----EYEEIYDL 526

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            +  LF K          +  E+ +I++      +V      +  +       +RL     
Sbjct: 527  VIELFEKFKSLLGDECVSRREYAEILSAGFSELSVGMIPAGADRVVCGDLKRTRLDKIKV 586

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TR 695
            L   G+++GV P + +K    +   +  L         TA +          +     + 
Sbjct: 587  LFFLGVSQGVVPADHSKGGLFTDNEREILKKNSMELAPTAREEGFMERFYLYLMMTKPSD 646

Query: 696  HLIYTRSL-RENNIPTIASRWLQRL----------LVLGGTDFFDNLKKRGQCYLDWTRK 744
             LI +          T  S  +  +                    ++   G+  L W ++
Sbjct: 647  QLILSYPTVTAEGKQTRPSGIIGEMKKRFPDLFIRETEAEKRPDVSVTAAGRAILSWLQE 706

Query: 745  LDYTTKQPHYKRP----------------------------------KPFPPLEAQPRTY 770
             D      + K                                         L       
Sbjct: 707  PDRLMDPENEKARELYSFLSSDEAKAKEMEDLAKAVAYSYKKGGIGRAAARELYGTLLRG 766

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S + ++      Y+ +    L L      + + D +D G LFH  +    +   +     
Sbjct: 767  SVTRMEGYAGCAYSHFLNHGLGLRA--GREYELDLSDMGNLFHQSLDTFFRNVRDHGKDF 824

Query: 831  I---NHLMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEHE--EKIQSS 877
                +   + ++    E+ +             +        +I+   +     +  +  
Sbjct: 825  RTITDAERRALVKRAVEEVSAKYRNTIMKSSARNAYLEKKVERITDRTVRALIYQIRKGD 884

Query: 878  IEKIFVNIPAKMAIE---SIGIHLTGFADRIDLLKSGF---VDITDYKTGDNP-KKETAQ 930
             E     +     I       ++L G  DR+D+ +      V I DYK+G          
Sbjct: 885  FEPEAFEVDVSTRIPLKDGEAVNLRGRIDRMDVFEDEDKIYVKIMDYKSGSTSFDLALLY 944

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
              +  QL +   A      S+   ++   A +FY  +      D + + +   + +E+  
Sbjct: 945  HGLQLQLVVYMDAALKLQESRHPGKQAVPAGIFYYHID-----DPVIDREDGMTDEEIEA 999

Query: 989  KSLKNLI 995
              L+ L 
Sbjct: 1000 GILRKLR 1006


>gi|294792590|ref|ZP_06757737.1| putative ATP-dependent nuclease, subunit B [Veillonella sp. 6_1_27]
 gi|294456489|gb|EFG24852.1| putative ATP-dependent nuclease, subunit B [Veillonella sp. 6_1_27]
          Length = 1164

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 115/978 (11%), Positives = 240/978 (24%), Gaps = 134/978 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
            L L          +  L  +            DL                  L I    +
Sbjct: 108  LGLLEQATKRPEFSSVLQQLFSEFRAFRVGPVDLERGAESVKNKVLQKKLRELAICMSAY 167

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             E L              ++ A  +  +      + I G     P    L+ T+ +    
Sbjct: 168  EEELSRHGERDIDPIM-EIVEALPQSPLME-NSHVFIDGFHWFTPTHYELIYTLFDLAKE 225

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            A++   +D  +     N                  H      ++ D L  +         
Sbjct: 226  AVIT--IDLPMAPKALNLARR------------GEHLFSRPLEIYDTLVARYGSSINW-- 269

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                       I                             + + LI   N   EA ++A
Sbjct: 270  -----------IGFDGKRGPQIVQALESNYFASPSKKNSTDATIPLIRGYNREREADAVA 318

Query: 376  IALRMSLD----ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSIL 430
              +   ++       +   ++  +             R+GI   I    P+       +L
Sbjct: 319  RRILAYVESSEEARYRDVCIMLRESETYGDTLEKVFARYGIPHFIDRQRPMKNHPLGELL 378

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            T+L + +       ++  L+K  L                LE               L+ 
Sbjct: 379  TALFDIVRHNYSRDSMFLLLKTDLMPLTREAVDELENYV-LEFGIDHYKWERESWPYLRG 437

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                +      +       ++  E   ++     D          T         G L I
Sbjct: 438  FHEGQDEESHVDAPRRARVNKARETIMDILSPWFDFAANAEGH--TGAEWGTQLYGLLEI 495

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
                +      ++      ++      E+    + S   +I            E + ++ 
Sbjct: 496  LQVPERLYEWAKDAETIGDQESKAS-HEQMYNAVLSFIDEISMVMKDEILTLDEMMLLLE 554

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
              +              + I          +  + + GLN+GV+P++      +    + 
Sbjct: 555  EGLSDVNYSMIPPSLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSMGDEGLIKDKERQ 614

Query: 671  DLNL--------KTAEKYIGQAAHDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLV 721
            +L             + +         M   +  L  + +   E+      S  ++RL  
Sbjct: 615  ELADAGITLAEGALPKAFNENFLLYLAMTRASDSLTLSYTGSGEDGTGLEPSLVVKRLES 674

Query: 722  LG------------GTDFFDNLKKRG---------------------------------- 735
            LG              D   +   R                                   
Sbjct: 675  LGYIDQAVDIPLSIAPDTEADYVWRPLQSLSLLSERWGALFSGYEVNPLWWGLYNWARES 734

Query: 736  ----QCYLDWTRKLDYTTKQPHYKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRI 790
                    +  R +      P   +             + S + +++    P+  YA+  
Sbjct: 735  ETYRPRLAEVLRGIRDNNDVPVITQDLVNGLFLSKGYMSGSVTRLERYQQCPFKFYAQYG 794

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELI-------KKRINKNTPEINHLMKQIIDSHF 843
            LKL+      +     + GT  H  +  L        K+  + +  E  +L + + D   
Sbjct: 795  LKLEPR--PVRSFGAPEIGTFLHANLERLGNYLLENNKQWRDLDEEEQENLCRTVADEIL 852

Query: 844  EK----ENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAK-------MA 890
            ++    E               +  H  ++   E   +S  +  ++            + 
Sbjct: 853  QENQLGEETSDAYQKAIEQRVQRTLHVTVDRLIEWSKRSDFDTKYLEQDFGRQGGWDPIR 912

Query: 891  IESIG---IHLTGFADRIDLL--KSGFV-DITDYKTGDNP-KKETAQKLIDPQLSLEAAA 943
            +       + L G  DRID           + DYK+G      +     +  QL     A
Sbjct: 913  VPLGENRYLRLIGQIDRIDEYTKNDQTYGMVIDYKSGGAHVTAQDVYYGLKLQLMTYLLA 972

Query: 944  LK-AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL------IE 996
            L+ A   +       A + Y  +K            +   +      + +N       IE
Sbjct: 973  LESAYGKTHGGSMSPAAVVYSYVKNPKIPADAPISYEDAVSLANESDAWQNSGYFSDDIE 1032

Query: 997  IVTLLQNGEQPFISHLRL 1014
            ++T + N    + S    
Sbjct: 1033 LLTHIDNKFLSYGSKRGP 1050


>gi|142439|gb|AAA22200.1| ATP-dependent nuclease [Bacillus subtilis]
 gi|2226191|emb|CAA74481.1| ATP-dependent nuclease [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1166

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 123/1040 (11%), Positives = 275/1040 (26%), Gaps = 149/1040 (14%)

Query: 58   QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
              L   E  +       I   + S   +          +S    P +++    + L +LI
Sbjct: 44   TFLMEYELAKTPDMGGMIRAQVFSFSRLAWRVLQHTGGMSR---PFLTSTGVQMLLRKLI 100

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE- 175
               + +               +    ++       +  ++   +    + ED+  +    
Sbjct: 101  EEHKQE-------------FKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMAESG 147

Query: 176  ---KYGMWWLLA--ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
               +Y    +L+     L I  +   + L +          + L+              I
Sbjct: 148  TASEYRGERVLSEKLHDLSILYQQMEKSLADQYLH--SEDYLTLLAEHIPLAEDIKGAHI 205

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
             + G     P   R++  +  H          D        + +        +       
Sbjct: 206  YVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTY------ 259

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
               Y L +    L++     +  G             ++                     
Sbjct: 260  ---YRLHQKAKELNLDITYKELSG-------------TERHTKTPELAHLEAQYEARPAI 303

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LEL 406
               +    + +++A N R E   IA  +   + E     K  A++       + +     
Sbjct: 304  PYAEKQEALTVMQAANRRAELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVF 363

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLS 465
              + I   I     +        + S L+ +     + A+   VK  L      P+  + 
Sbjct: 364  ADYEIPYFIDGKASMLNHPLIEFIRSSLDVLKGNWRYEAVFRCVKTELLFPLNEPKAKVR 423

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
               + LE   +                  R  +  ++      +  +     +    +V 
Sbjct: 424  EQVDQLENYCIAYGIKGDRWTKGDRFQYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVP 483

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKT 583
             + Q    +   KT +          + T + +     +    D+ R +     ++    
Sbjct: 484  PLFQLQKRMKKAKTVQEKAEALYRYLEETDVPLKLDQERQRAEDDGRIIEAQQHQQAWDA 543

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            +  L  + +E     + +   +  +I    +  T          +F+     SR+     
Sbjct: 544  VIQLLEEFVEMMGDDEISLDLFQQMIEAGAESLTFSLIPPALDQVFVGNMDLSRMYGTSC 603

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR-- 695
              + G N+GV P    +N  LS   +       + L +  +      H    MA  +   
Sbjct: 604  TFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSD 663

Query: 696  HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLD-------------- 740
             L  +  + +    T+  S  ++RL  L        L    +   D              
Sbjct: 664  RLYVSYPIADAEGKTLLPSMIVKRLEELFPHHKERLLTNEPEQVSDEEQLMYVVNKSVAQ 723

Query: 741  ---------WTRKLDYTTKQ----------------------------PHYKRPKPFPPL 763
                     WTR+ D +                                          L
Sbjct: 724  SFTASQLRLWTREYDISDVWWSTYNVLMSEQDRLQSKKLFSSLFFRNEVKQLERSVSRQL 783

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
              +    S S ++     P++ +A   L L     F    +  D G LFH+ +  +  + 
Sbjct: 784  YGERIQGSVSRMETFNACPFSHFASHGLHLKERQFF--KLEAPDIGQLFHSSLKLISDRL 841

Query: 824  INKNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEH 870
             ++     +             ++++     ++  L  +     +    KI      +  
Sbjct: 842  RDEKLDWRDLTKEQCELFSYDAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILS 901

Query: 871  EEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITD 917
            E    S    I + +    K  +  +   L         G  DR+D  +S     + I D
Sbjct: 902  EHAKASGFVPIGLELGFGGKGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVD 961

Query: 918  YKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
            YK+             +  Q+      ++   +         A + Y  +      D + 
Sbjct: 962  YKSSDKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMRATPAGVLYFHI-----HDPMI 1016

Query: 976  NDKKKYSADELSEKSLKNLI 995
                    DE+ ++  K   
Sbjct: 1017 QSNLPLGLDEIEQEIFKKFK 1036


>gi|282849709|ref|ZP_06259093.1| putative ATP-dependent nuclease subunit B [Veillonella parvula ATCC
            17745]
 gi|282580646|gb|EFB86045.1| putative ATP-dependent nuclease subunit B [Veillonella parvula ATCC
            17745]
          Length = 1164

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 112/978 (11%), Positives = 242/978 (24%), Gaps = 134/978 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
            L L          +  L  +            DL                  L I    +
Sbjct: 108  LGLLEQATKRPEFSSVLQQLFSEFRAFRVGPADLERGAETVKNNVLQKKLRELAICMSAY 167

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             E L              ++ A  +  +      + I G     P    L+ T+ +    
Sbjct: 168  EEELSRHGERDIDPIM-EIVEALPQSPLME-NSHVFIDGFHWFTPTHYELIYTLFDLAKE 225

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            A++   +D  +     N                  H      ++ D L  +         
Sbjct: 226  AVIT--IDLPMAPKALNLAHR------------GEHLFSRPLEIYDTLVARYGSSINW-- 269

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                       +                             + + LI   N   EA ++A
Sbjct: 270  -----------VGFDGKRGPQIVQELEANYFASPSKKNTTDATIPLIRGYNREREADAVA 318

Query: 376  IALRMSLD----ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSIL 430
              +   ++       +   ++  +             R+GI   I    P+       +L
Sbjct: 319  RRILAYIESSKEARYRDVCIMLRESETYGDTLEKVFARYGIPHFIDRQRPMKNHPLGELL 378

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            ++L + +       ++  L+K  L                LE               L+ 
Sbjct: 379  SALFDIVRHNYSRDSMFLLLKTDLMPLSREAVDELENYV-LEFGIDHYKWERESWPYLRG 437

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                +      +       ++  +   ++     D          T         G L I
Sbjct: 438  FHEGQDEESHVDAPRRARVNKARQTIMDILSPWFDFAANAEGH--TGAEWGTQLYGLLEI 495

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
                +      ++      ++      E+    + S   +I            E + ++ 
Sbjct: 496  LQVPERLYEWAKDAETIGDQESKAS-HEQMYNAVLSFIDEISMVMKDEILTLDEMMLLLE 554

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
              +              + I          +  + + GLN+GV+P++      +    + 
Sbjct: 555  EGLSDVNYSMIPPSLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSMGDEGLIKDKERQ 614

Query: 671  DLNL--------KTAEKYIGQAAHDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLV 721
            +L             + +         M   +  L  + +   E+      S   +RL  
Sbjct: 615  ELADAGITLAEGALPKAFNENFLLYLAMTRASDSLTLSYAGSGEDGTGLEPSLVAKRLES 674

Query: 722  LG------------GTDFFDNLKKRG--------QCYLD----------------WTRKL 745
            LG              D   +   R         + +                  W R+ 
Sbjct: 675  LGYIDQVVDIPLSIAPDTEADYVWRPLQSLSLLSERWGALFSGYEVNPLWWGLYNWARES 734

Query: 746  DYTTKQPHYKRPKPFPPLEAQ---------------PRTYSFSEIKQLINDPYAVYARRI 790
            +    +            +                   + S + +++    P+  YA+  
Sbjct: 735  ETYRPRLAEVSRGIRDNNDVPVITQDLVNGLFLSKGYMSGSVTRLERYQQCPFKFYAQYG 794

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELI-------KKRINKNTPEINHLMKQIIDSHF 843
            LKL+      +     + GT  H  +  L        K+  + +  E  +L + + D   
Sbjct: 795  LKLEPR--PVRSFGAPEIGTFLHANLERLGNYLLENNKQWRDLDEEEQENLCRTVADEIL 852

Query: 844  EK----ENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAK-------MA 890
            ++    E               +  H  ++   E   +S  +  ++            + 
Sbjct: 853  QENQLGEETSDAYQKAIEQRVQRTLHVTVDRLVEWSKRSDFDTKYLEQDFGRQGGWDPIR 912

Query: 891  IESIG---IHLTGFADRIDL--LKSGFV-DITDYKTGDNP-KKETAQKLIDPQLSLEAAA 943
            +       + L G  DRID           + DYK+G      +     +  QL     A
Sbjct: 913  VSLGEDRYLRLIGQIDRIDEYTRDDQTYGMVIDYKSGGAHVTAQDVYYGLKLQLMTYLLA 972

Query: 944  LK-AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL------IE 996
            L+ A   +       A + Y  +K            +   +      + +N       IE
Sbjct: 973  LESAYGKTHGGSMSPAAVVYSYVKNPKIPADAPISYEDAVSLANESDAWQNSGYFSDDIE 1032

Query: 997  IVTLLQNGEQPFISHLRL 1014
            ++T + N    + S    
Sbjct: 1033 LLTHIDNKFLSYGSKRGP 1050


>gi|221308900|ref|ZP_03590747.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis subsp.
            subtilis str. 168]
 gi|221313224|ref|ZP_03595029.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis subsp.
            subtilis str. NCIB 3610]
 gi|221318147|ref|ZP_03599441.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis subsp.
            subtilis str. JH642]
 gi|221322422|ref|ZP_03603716.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis subsp.
            subtilis str. SMY]
 gi|255767242|ref|NP_388943.2| ATP-dependent deoxyribonuclease subunit B [Bacillus subtilis subsp.
            subtilis str. 168]
 gi|239938591|sp|P23477|ADDB_BACSU RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|225184869|emb|CAB12902.2| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis subsp.
            subtilis str. 168]
          Length = 1166

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 123/1040 (11%), Positives = 274/1040 (26%), Gaps = 149/1040 (14%)

Query: 58   QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
              L   E  +       I   + S   +          +S    P +++    + L +LI
Sbjct: 44   TFLMEYELAKTPDMGGMIRAQVFSFSRLAWRVLQHTGGMSR---PFLTSTGVQMLLRKLI 100

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE- 175
               + +               +    ++       +  ++   +    + ED+  +    
Sbjct: 101  EEHKQE-------------FKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMAESG 147

Query: 176  ---KYGMWWLLA--ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
               +Y    +L+     L I  +   + L +          + L+              I
Sbjct: 148  TASEYRGERVLSEKLHDLSILYQQMEKSLADQYLH--SEDYLTLLAEHIPLAEDIKGAHI 205

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
             + G     P   R++  +  H          D        + +        +       
Sbjct: 206  YVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTY------ 259

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
               Y L +    L++     +  G             ++                     
Sbjct: 260  ---YRLHQKAKELNLDITYKELSG-------------TERHTKTPELAHLEAQYEARPAI 303

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LEL 406
               +    + +++A N R E   IA  +   + E     K  A++       + +     
Sbjct: 304  PYAEKQEALTVMQAANRRAELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVF 363

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLS 465
              + I   I     +        + S L+ +     + A+   VK  L      P+  + 
Sbjct: 364  ADYEIPYFIDGKASMLNHPLIEFIRSSLDVLKGNWRYEAVFRCVKTELLFPLNEPKAKVR 423

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
               + LE   +                  R  +  ++      +  +     +    +V 
Sbjct: 424  EQVDQLENYCIAYGIKGDRWTKGDRFQYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVP 483

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKT 583
             + Q    +   KT +          + T + +     +    D+ R +     ++    
Sbjct: 484  PLFQLQKRMKKAKTVQEKAEALYRYLEETDVPLKLDQERQRAEDDGRIIEAQQHQQAWDA 543

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            +  L  + +E     + +   +  +I    +  T          +F+     SR+     
Sbjct: 544  VIQLLEEFVEMMGDDEISLDLFQQMIEAGAESLTFSLIPPALDQVFVGNMDLSRMYGTSC 603

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR-- 695
              + G N+GV P    +N  LS   +       + L +  +      H    MA  +   
Sbjct: 604  TFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSD 663

Query: 696  HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLD-------------- 740
             L  +  + +    T+  S  ++RL  L        L    +   D              
Sbjct: 664  RLYVSYPIADAEGKTLLPSMIVKRLEELFPHHKERLLTNEPEQVSDEEQLMYVVNKSVAQ 723

Query: 741  ---------WTRKLDYTTKQ----------------------------PHYKRPKPFPPL 763
                     WTR+ D +                                          L
Sbjct: 724  SFTASQLRLWTREYDISDVWWSTYNVLMSEQDRLQSKKLFSSLFFRNEVKQLERSVSRQL 783

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
              +    S S ++     P++ +A   L L     F    +  D G LFH+ +  +  + 
Sbjct: 784  YGERIQGSVSRMETFNACPFSHFASHGLHLKERQFF--KLEAPDIGQLFHSSLKLISDRL 841

Query: 824  INKNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEH 870
              +     +             ++++     ++  L  +     +    KI      +  
Sbjct: 842  REQKLDWRDLTKEQCELFSYDAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILS 901

Query: 871  EEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITD 917
            E    S    I + +    K  +  +   L         G  DR+D  +S     + I D
Sbjct: 902  EHAKASGFVPIGLELGFGGKGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVD 961

Query: 918  YKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
            YK+             +  Q+      ++   +         A + Y  +      D + 
Sbjct: 962  YKSSDKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMRATPAGVLYFHI-----HDPMI 1016

Query: 976  NDKKKYSADELSEKSLKNLI 995
                    DE+ ++  K   
Sbjct: 1017 QSNLPLGLDEIEQEIFKKFK 1036


>gi|332300661|ref|YP_004442582.1| hypothetical protein Poras_1481 [Porphyromonas asaccharolytica DSM
            20707]
 gi|332177724|gb|AEE13414.1| hypothetical protein Poras_1481 [Porphyromonas asaccharolytica DSM
            20707]
          Length = 996

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 159/1084 (14%), Positives = 324/1084 (29%), Gaps = 177/1084 (16%)

Query: 27   NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86
            +  L +  R    N   L    + VPTKRA   L+ E +      +TILP I ++ + + 
Sbjct: 5    DNFLSQVVRRLRSNGTPLREQLLVVPTKRAGTFLQRELVAQLVDAATILPRIVTIDEWIT 64

Query: 87   EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD---IIKDLYPESPLSLPISPA 143
            E     +L +  L         +  L  +   +  +  +       +   S     +   
Sbjct: 65   EMSGRVILDNTAL---------ISILYEVYAAYLAEQGEEKAATDQMLRLSQTERMLRDF 115

Query: 144  NAIWLAKN----LADIIDIIETEEKKWEDLHALKNEKYGMWW-------------LLAAD 186
              + LA      L   ++ ++  +  +  L   + E    +W                  
Sbjct: 116  QDMDLALANVEMLLGNLEELDAFD-DYSFLTEEECEAIRKFWTTLPKDFFKKPQGEEYLH 174

Query: 187  F---LKIASKYWTERLVELNASSPVGYQIALMRA---------EAEHLMKGTKGPIIIAG 234
            F    +   K +  RL EL  +        +            E           +   G
Sbjct: 175  FSVVWREIYKRFNTRLTELGVAYRAAAYRLVAERDFTDDDLLKELRRHSGSKISLVSFIG 234

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
                 PA  +++  +      A+ L           W  ++  +T+  +       H   
Sbjct: 235  LYNLTPAEQKIIKKLQIASAEALNL--------QLYWQKVSLDATDEFT------DHLYR 280

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            ++ + ++ L  +  D       S +++  S+  +        S +      + K P    
Sbjct: 281  TIEQNVELLGGEIIDGGVARVYSPKIHLLSLNSTILQPQVVNSLIDKIIEHDPKAP---- 336

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
                           E + IAI L         +  LI   ++L +     L       +
Sbjct: 337  ---------------EELRIAIVL-------NDEKTLIPLMKSLKQPTCTSL-------N 367

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
            ++ G PL  T  ++ +   LN              +  PL      E    +   +   +
Sbjct: 368  VTMGYPLQYTSVATWIRRYLNIFG-----------LVSPL----DRELARVKLTCSRLQL 412

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
             L          +L + ++D+IA           +  + E        +   +L+ +TP 
Sbjct: 413  WLAAPLTRKLFGELTTTLMDQIALHHYAITASELRKIIEELTNGADEAVRQPLLEILTPS 472

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-- 592
             T K           +    +L          +E         +             +  
Sbjct: 473  FTGKELLGR------VGQLLELLKGTSSVPEEEEDEPADEPIDQVILSEALDQIILYVTQ 526

Query: 593  --------ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
                    E+   +         ++ +L+   ++  +      L  +G LE+R L FD +
Sbjct: 527  VSNLLQPNESDRHLLDTPSHVAYLLEQLLAVGSIPFEGAPLEGLQEMGFLETRTLTFDYV 586

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSL 703
            I+  + EG  PK++     +  +++   ++ T        A+ F     G + +   +  
Sbjct: 587  IMLNVQEGDLPKSSHTTTLIPDLLRRAAHMTTYRTEDDTNAYHFYRLIQGAKEVYLLQDT 646

Query: 704  RENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP- 761
            R  +      SR++ ++  L       NL+ +   Y D     D T  Q   K  +    
Sbjct: 647  RPKSISSMEPSRYVDQIRYL------TNLQLQEAAYADPLEARDETVSQITGKDEEVRDY 700

Query: 762  --PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
               L +  RT+S S++      PY  Y ++I  +           + + G++ H  + + 
Sbjct: 701  LEQLTSGERTFSPSDLITYYKCPYQFYLKKIKGVGEPRPEPGVVTQIELGSIVHEYLEQF 760

Query: 820  IKKRINKNTPEI----------NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
             K  + K    I             +  I       ++ P     I      +     LE
Sbjct: 761  YKGLVQKAGDVITRDQLEHKVSRQTLTDIYKEIVSDKSAPDD---ILLTDLERYISKALE 817

Query: 870  HEEKIQSS---IEKIFVNIPAK---MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
             +  +  S   ++ +      K       +  I++TG  DR+D +  G   I DYKTG  
Sbjct: 818  IDRLLLGSSGTLQLLASETKIKNVPFQWGTHTIYMTGQPDRVDKVSGGICRIVDYKTGSI 877

Query: 924  PKKETAQK-------------------LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
             + +  +K                       Q  L A          I+  +     Y  
Sbjct: 878  KQPKKLKKLSFDTLTSWRFQKNNYKLGGYMLQSYLYALLYAQQPEVGIEELQPT--LYSL 935

Query: 965  LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
                   +      +    + + E   K L  +V    + E+ F       +    + +Y
Sbjct: 936  APAVPASEGAIYLDEPKDLNAIKEIVFKYLDLLV----DPEKKFF--QTPVQDICKECDY 989

Query: 1025 DHLA 1028
              + 
Sbjct: 990  KTIC 993


>gi|294674329|ref|YP_003574945.1| hypothetical protein PRU_1650 [Prevotella ruminicola 23]
 gi|294472070|gb|ADE81459.1| conserved hypothetical protein [Prevotella ruminicola 23]
          Length = 879

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 80/556 (14%), Positives = 176/556 (31%), Gaps = 60/556 (10%)

Query: 520  AVLLVDHI-LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            A   ++ I       L+              +  W       +            +    
Sbjct: 337  ARRWIESIKRHPYATLMPDDFASQRYTDIQPLLHWLISLTQTIATSKSPIIDSPLDTESL 396

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                TL +  S +++    +K + I    ++ +LI   ++    E +  + ++G LE+R 
Sbjct: 397  FRMYTLLNRLSGLVD-SGVLKVDVITLQRLVVQLISTTSIPFHGEPAEGIQVMGVLETRN 455

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHL 697
            L+FD ++L   NEG  P+      F+   ++    L T +  +    H F       + +
Sbjct: 456  LDFDHVLLLSCNEGNMPRGVNDTSFIPYALRKAYGLTTIDYKVSIYEHYFHRLLQRAKDV 515

Query: 698  IYTRS-LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ-CYLDWTRKLDYTTKQPHYK 755
                +    +      SR++ +L+V           K GQ   L   + ++ T +     
Sbjct: 516  TILYNNATSDGKTAEMSRFMLQLMVENKIPITFQTLKAGQTPQLHAPQAINKTPEV---- 571

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP-DRTDRGTLFHN 814
              +            S + I   +      + R + +L      + D  D    G +FH 
Sbjct: 572  MSQLQRRFAKDAGGISPTAINTYLRCQLRFFYRYVCELKEPDSTEDDLIDNRLFGNIFHK 631

Query: 815  IITELIK----------KRINKNTPEINHLMKQIIDSHFEKENLP-----------PHID 853
                + +               +  +    +++++D   ++E                + 
Sbjct: 632  AAQLVYEYLVATKATITTMAIDDLLKEEVTIERVVDEAIKQEFFHINDASRPLPPLDGLQ 691

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS--- 910
            +I R +  K     LE +    +    + +  P  + + +   ++ G  DR+D +     
Sbjct: 692  LINREVIIKYLRQLLECDR-RLAPFSILGLEKPVNITLNNQ--YIAGVIDRLDSITDPET 748

Query: 911  --GFVDITDYKTGDNP-----------KKETAQKLID--PQLSLEAAALKAGSFSQIDCR 955
                + + DYKTG               +E  +   D   Q  L A  ++    S+    
Sbjct: 749  GLERIRVVDYKTGSRQMKAMPDVAAIFSQEAIKDHSDYFLQTLLYAHIVR----SKTPQM 804

Query: 956  KVANLFYIRLKQKFKIDCITN--DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
                L +I+       D       +      + S++ +  L + +  + N +  F+    
Sbjct: 805  VSPCLLFIQHAGSEDYDPTLKIGKEAITDIADYSDEFITLLRQQLDDIYNAQIAFV--PT 862

Query: 1014 LSEKSNIQSEYDHLAR 1029
              +       Y  L R
Sbjct: 863  DDQHRCETCPYAALCR 878



 Score = 99.6 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/460 (13%), Positives = 116/460 (25%), Gaps = 106/460 (23%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F   +   LL+                L+ V +  P KRA   L         +K    P
Sbjct: 4   FLEHVAEDLLSRYGTN-----------LSRVAVVFPNKRASLFLNEHLAR-LAQKPLWSP 51

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
              ++ D+        +     L   V  + R+      I    ++  D           
Sbjct: 52  AYITISDLFRSHSKLQVADPILL---VCELHRVFTACTGI----DETLDHFYGWGQLLLS 104

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                  N     K LA++            D+H L +  Y           ++  ++++
Sbjct: 105 DFDDLDKNMAPADKVLANL-----------RDIHELDDTSYLTPEQR-----EMIKRFFS 148

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
               E        +   L                          A  + ++       GA
Sbjct: 149 NFSEE--------HNTELKERFLRLWSH----------IGEIYHAYNQQLAEKQLAYEGA 190

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
           +                         +         Q     L   L+ + + +      
Sbjct: 191 LYRQVATDETLE----------FEYDTYVFIGFNLLQKVEQTLFSRLEKQGKAIFYQDTD 240

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
               +                                     + LI A  E  +A  I+ 
Sbjct: 241 EVPPH------------------------------------HINLISAPTENIQARYISE 264

Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
            L      + +K+A++  +  L + V   L      I+I+ G PL  T  +S++ +L+N 
Sbjct: 265 WLDADRINDGRKTAIVLCNEGLLQTVIHCLPENVDKINITTGYPLGQTSIASLINTLINM 324

Query: 437 IFKLNDFMA-------IATLVKHPLAKFGFPEKYLSRAKN 469
                           I ++ +HP A     +    R  +
Sbjct: 325 QVHGYSLRKQTFARRWIESIKRHPYATLMPDDFASQRYTD 364


>gi|182436135|ref|YP_001823854.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
            griseus NBRC 13350]
 gi|178464651|dbj|BAG19171.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
            griseus NBRC 13350]
          Length = 1184

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 134/1096 (12%), Positives = 263/1096 (23%), Gaps = 154/1096 (14%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE+           A V +   +++A  ELR       G  +   P   +        
Sbjct: 65   TLVESVAARVNRGADPARVLVLTFSRKAAVELRDRMAARLG--AARGPQATTFHSFCYAL 122

Query: 89   FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A        +    +S  ++ + +  L+    +        L          S     
Sbjct: 123  VRAHQDADLFADPLRLLSGPEQDVTVRELLAGQLDLEK---AGLAHVRWPDELRSCLTTR 179

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++          + L A         W  AA FL         + V   A  
Sbjct: 180  GFADEVRAVLARSRELGLGPDALAAFARRTGRPDWSAAAQFLAEYLDILDAQGVLDYAEL 239

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG----------- 255
                 +   R E    + G+   + +     + PA  RL+  +A +              
Sbjct: 240  VHRAVLLAERPEVAERLAGSYDAVYVDEYQDTDPAQVRLLHALAGNRGRTPEYTRGRGEE 299

Query: 256  ----AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK-----------LL 300
                     G       A            T           Y+                
Sbjct: 300  GRGDGGRGDGGRGEEARAGGARSEAARGGRTLIAFGDPDQSIYTFRGADVNGILDFPDAF 359

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
               D     V  L        G              + +    +  ++ P   +    V 
Sbjct: 360  RRADGDPAPVGVLTTSRRSGAGLLAATRLLTRRMPLTRLPADMVRAHRDPAAVRDGGRVE 419

Query: 361  LIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDIS 416
                     E  +IA  LR +  E+     + + L+ A       V+  LT  G+ +++ 
Sbjct: 420  TYTYPTASTELENIADLLRRAHLEDGVPWQEMAVLVRAGGRSLPAVRRALTSAGVPLEVD 479

Query: 417  AGI-PLSTTLHSSILTSLLNAIFKLNDFMAI-------------ATLVKHPLAKFGFPEK 462
                PL      + L + L  +        +                   P    G  + 
Sbjct: 480  GDDLPLRHEPAVAPLLTALRTVATAALRGLLDGDRDETDGAGRDEADGADPGETAGADQG 539

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDR--------------------------- 495
              + A       A R    +   +D ++ +                              
Sbjct: 540  DTAGADPGETAGAGRAGARTSSWLDTETALTLLTSPLGSMDAADLRRLGRALRDEERAAG 599

Query: 496  -------IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                             P             A  L   + +    L    T + +     
Sbjct: 600  IRVPAPSDELLARALAEPERLVTHDPAYAHGAQRLGALLRKARELLEGGGTAEEALWALW 659

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            + + W                    +L         ++      E  +  +       ++
Sbjct: 660  NGTPWPGRLERAALRGGAGGRNADRDLDAVCALFETAA----RAEERTGGRGALNFLEEV 715

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
              + I  +T+  +  +   + ++    S+ L +  +++ G+ EG+WP    +   L    
Sbjct: 716  DAQDIAADTLSRRTARPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADR 775

Query: 669  QSDLNLKTAEKYIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
                 L          A                L+ T      +     SR+L  L V  
Sbjct: 776  IGRDGLAEPLTPGALLAEERRLFYVAATRARDRLVVTAVKAPADDGDQPSRFLTELGV-- 833

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY----------------------------- 754
                     +R         +L  TT  P                               
Sbjct: 834  EPRDVTGRPRRPLAVAALVAELRATTVDPAASEALREAAAHRLARLAALTDDEGQPLVPA 893

Query: 755  ------------KRPKPFPPLEAQPRTYSFSEIKQLIN-DPYAVYARRILKLDFIPHFKK 801
                         R         QP T S S + QL N      +  R      +     
Sbjct: 894  AHPYRWWGLEEPTRSAVPLRDRDQPVTLSGSALDQLANTCALQWFLGR-----EVKADAP 948

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
                   G + H ++ + +         ++       + +    +          +    
Sbjct: 949  ATAAQGFGNVVH-VLADEVASSRTPADLDVLMERLDSVWNGLAFDAPWKSEQEKDQAR-- 1005

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYK 919
                 FL      +             + +E+    + + G  DR++    G   + D+K
Sbjct: 1006 AALERFLHWHVLDRGGRTPTASEHDFDVTLEAGEYAVRIRGSMDRVEQDAEGRAYVVDFK 1065

Query: 920  TGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCIT 975
            TG   P K+       PQL++   A++ G+  ++      +      ++L+Q        
Sbjct: 1066 TGKGAPTKDEVATH--PQLAVYQLAVREGAVDEVFDGRRPEPGGAELVQLRQPAPKKEGG 1123

Query: 976  NDKKKYSADELSEKSL 991
            +   K  A E      
Sbjct: 1124 DAFPKVQAQEPLAGEW 1139


>gi|291483546|dbj|BAI84621.1| ATP-dependent deoxyribonuclease subunit B [Bacillus subtilis subsp.
            natto BEST195]
          Length = 1166

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 123/1040 (11%), Positives = 274/1040 (26%), Gaps = 149/1040 (14%)

Query: 58   QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
              L   E  +       I   + S   +          +S    P +++    + L +LI
Sbjct: 44   TFLMEYELAKTPDMGGMIRAQVFSFSRLAWRVLQHTGGMSR---PFLTSTGVQMLLRKLI 100

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE- 175
               + +               +    ++       +  ++   +    + ED+  +    
Sbjct: 101  EEHKQE-------------FKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMAESG 147

Query: 176  ---KYGMWWLLA--ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
               +Y    +L+     L I  +   + L +          + L+              I
Sbjct: 148  TASEYRGERVLSEKLHDLSILYQQMEKSLADQYLH--SEDYLTLLAEHIPLAEDIKGAHI 205

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
             + G     P   R++  +  H          D        + +        +       
Sbjct: 206  YVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTY------ 259

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
               Y L +    L++     +  G             ++                     
Sbjct: 260  ---YRLHQKAKELNLDITYKELSG-------------TERHTKTPELAHLEAQYEARPAV 303

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LEL 406
               +    + +++A N R E   IA  +   + E     K  A++       + +     
Sbjct: 304  PYAEKQEALTVMQAANRRAELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVF 363

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLS 465
              + I   I     +        + S L+ +     + A+   VK  L      P+  + 
Sbjct: 364  ADYEIPYFIDGKASMLNHPLIEFIRSSLDVLKGNWRYEAVFRCVKTELLFPLNEPKAKVR 423

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
               + LE   +                  R  +  ++      +  +     +    +V 
Sbjct: 424  EQVDQLENYCIAYGIKGDRWTKGDRFQYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVP 483

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKT 583
             + Q    +   KT +          + T + +     +    D+ R +     ++    
Sbjct: 484  PLFQLQKRMKKAKTVQEKAEALYRYLEETDVPLKLDQERQRAEDDGRIIEAQQHQQAWDA 543

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            +  L  + +E     + +   +  +I    +  T          +F+     SR+     
Sbjct: 544  VIQLLEEFVEMMGDDEISLDLFQQMIEAGAESLTFSLIPPALDQVFVGNMDLSRMYGTSC 603

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR-- 695
              + G N+GV P    +N  LS   +       + L +  +      H    MA  +   
Sbjct: 604  TFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSD 663

Query: 696  HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLD-------------- 740
             L  +  + +    T+  S  ++RL  L        L    +   D              
Sbjct: 664  RLYVSYPIADAEGKTLLPSMIVKRLGELFPHHKERLLTNEPEQVSDEEQLMYVVNKSVAQ 723

Query: 741  ---------WTRKLDYTTKQ----------------------------PHYKRPKPFPPL 763
                     WTR+ D +                                          L
Sbjct: 724  SFTASQLRLWTREYDISDVWWSTYNVLMSAPDRLQSKKLFSSLFFRNEVKQLERSVSRQL 783

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
              +    S S ++     P++ +A   L L     F    +  D G LFH+ +  +  + 
Sbjct: 784  YGERIQGSVSRMETFNACPFSHFASHGLHLKERQFF--KLEAPDIGQLFHSSLKLISDRL 841

Query: 824  INKNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEH 870
              +     +             ++++     ++  L  +     +    KI      +  
Sbjct: 842  REQKLDWRDLTKEQCELFSYDAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILS 901

Query: 871  EEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITD 917
            E    S    I + +    K  +  +   L         G  DR+D  +S     + I D
Sbjct: 902  EHAKASGFVPIGLELGFGGKGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVD 961

Query: 918  YKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
            YK+             +  Q+      ++   +         A + Y  +      D + 
Sbjct: 962  YKSSDKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMRATPAGVLYFHI-----HDPMI 1016

Query: 976  NDKKKYSADELSEKSLKNLI 995
                    DE+ ++  K   
Sbjct: 1017 QSNLPLGLDEIEQEIFKKFK 1036


>gi|300704440|ref|YP_003746043.1| helicase, c_term recb family exonuclease [Ralstonia solanacearum
           CFBP2957]
 gi|299072104|emb|CBJ43436.1| putative helicase, C_term RecB family exonuclease [Ralstonia
           solanacearum CFBP2957]
          Length = 963

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 156/954 (16%), Positives = 286/954 (29%), Gaps = 106/954 (11%)

Query: 10  TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEI 67
             AP   F      A           +D        +  + VPT   I  +R        
Sbjct: 5   AFAPGPAFLSHAADA-------AWRFFDAHAAQAPGTGVVVVPTAAQIPGVRGALHASAQ 57

Query: 68  TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI--LIWRNKLPD 125
            G    +LP I +LG      +  DL     L    S + RLL + + +    W  +   
Sbjct: 58  AGGVPRLLPRILTLG-----HWLLDLPPEPGLPAARSPLSRLLAVQQALKTQAWLREALG 112

Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
              D        + ++ ++ +       D  D  ET+ +      AL       +  L+ 
Sbjct: 113 AQDDAALWGVAQVLVTVSDELSQRWLTLDAADS-ETDGRHDALEAALSAALERTYAQLSE 171

Query: 186 DFL----KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
            FL    +I   +W        AS P+  ++  MR   + L     GP++    T    A
Sbjct: 172 RFLGTESRIVLTFWRLL---SGASDPIPVRLRAMRRLIDALR----GPLVWMSPTDPEGA 224

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
               +   A                                                   
Sbjct: 225 DFDFLMRAAGRVPV---------------------------------------------- 238

Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
            L I  +   R                   L   +       +        ++    + +
Sbjct: 239 -LRIGYDWQAREPAPEAAAPATHAAFRNLLLHAWSECGTAAQLAPEASAEAERPPPALRI 297

Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
             A    +EA   A  L   L+  ++  AL+  DR +ARRV+  L R  + +    G  L
Sbjct: 298 AGAARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKL 357

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
           STT  ++ L   L+ +    D  A+  L+K P                  EL      +N
Sbjct: 358 STTRAAAALMRWLDVVQGDGDTAALLDLLKSPFCLREADAPSSVAPDWVAELERRVRRRN 417

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                        R    + +T      +  + +   LA  L + +      L+  +   
Sbjct: 418 VSGGWG-----RLRRLVAQRDTDAEGADASDATDAGPLAGRLAERL-----GLLADEAAL 467

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
               G+ ++  W  L    L  + +    +  +   +          S      +  + +
Sbjct: 468 WRRAGHATLEAWVTLLAGTLDRLRMRAGLQSDDAGRQLLDWLDRLRVSVHGGADAGARFS 527

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
             EW  +++ L++          +   + IL    +R+  FD +++ G ++   P    +
Sbjct: 528 LQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPE 587

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQR 718
             F S  ++ +L L    +   Q A D   +      ++ T         P   S WL+R
Sbjct: 588 WLFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPNRLSGWLER 647

Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
           L           ++      L   +     T  P              P T S +    L
Sbjct: 648 LQRRL---AVAGMRIDAPVVLPALQTASRPTDMPAPA------APALVPATLSAAAYNSL 698

Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLM 835
              PY  +  R+L+L  +     + ++ D G L H I+    ++ ++    +  +   L+
Sbjct: 699 RRCPYQFFVGRMLRLGELGEVSDELEKRDVGELLHAILHRFHRQLLDTPMADPADRLALL 758

Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAI--- 891
           + + D  F          + +   +  +  S+L  +   ++         + A  +I   
Sbjct: 759 QSLTDERFGSLLAEDGHALRFYRRWQNVMPSYLAWQAAREAQGWRFEAGEVDADTSIALP 818

Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK--LIDPQLSLEAAA 943
               + L G  DRID      V + DYKT          K    D QL      
Sbjct: 819 GGQALRLRGRIDRIDTHPEHGVAVLDYKTQSPIALARKAKTPFEDCQLPFYGLL 872


>gi|239625644|ref|ZP_04668675.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519874|gb|EEQ59740.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1176

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 121/984 (12%), Positives = 262/984 (26%), Gaps = 166/984 (16%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
                 L   I  +       + L  +  E          + L++    + + + E   + 
Sbjct: 91   GFINQLKSQISELYQYGITPDMLRDVMREAGSPLLKQKLEDLELIYSGFRQYIEEHYIT- 149

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 + ++  E           I++ G TG  P   RL+     H    +    +D   
Sbjct: 150  -AEEILDILCRELPKWEVLKDSVILLDGFTGFTPVQYRLVELFLLHARKVLCSVTIDPRA 208

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                                      Q+     +    + R D     +   +       
Sbjct: 209  NAY------------------QEGSIQHLFY--MGKHTVCRLDYMARHHGIAKEPDVICS 248

Query: 327  ISKSFLPPDTSDMRNTDIL--ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
               ++   ++ D+   +            +    V + ++     EA  +   +   + E
Sbjct: 249  RRPAWRFLESPDLDFLEQNLYRYYGNVWDRPADHVVIYKSRGPAGEAAYVCSRIEQMVQE 308

Query: 385  NK---KKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                 + +A+IT D     R         GI   +     +       ++ + L  I + 
Sbjct: 309  EGLRYRDAAVITGDLASYGRELAHQFDEAGIPYFLDDKKSIMENPLVELIRAALETI-RD 367

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALE---------------LVALRGNKNSYDI 485
              + ++   +K  L      +  +  A +  E                            
Sbjct: 368  FSYESVFRYLKTGLVYDRAEDGDVPGAGDVSEAGDVLDFGNLTSLGNAGQPEEAVEFDGS 427

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE----------LAVLLVDHILQCITPLV 535
             +   L+ DR+        +  W+   S+ +K                   IL+ + PL 
Sbjct: 428  REHAGLMTDRLENYVRALGIRGWKRWESQWEKPCRGGEKLNLKELNAYRQWILKPLRPLR 487

Query: 536  TYKTNKNSTCGN--LSISDWTKLTV---------TCLQNVCLDEHRKLPNLWFEEEGKTL 584
                 + +T G+   ++ ++ +               +         L   + +   + L
Sbjct: 488  EAFKEEGATIGSVTAALREYLERMGLRGKLEDYSEFFRGRGNPGDENLVREYSQVYDRVL 547

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
              LF ++       K +   +  I+        V         + +     SRL +   L
Sbjct: 548  E-LFERLEGLLGAEKTDMKNYPQILDAGFGEIKVGVIPATIDQVMVGDITRSRLEDVKVL 606

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRH 696
               G+NEG  P+  +    L+   ++           TA +          +     +R 
Sbjct: 607  FFVGVNEGTVPQRKSGASLLTDRDRAVFKEFNMELAPTAREDGCIQKFYLYLMMAKPSRR 666

Query: 697  LIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL----------DWTRKL 745
            L+ T +           S  +  +  L       + +                 D  RKL
Sbjct: 667  LVLTYAGMSSEGKSQRPSSLIGEVEKLFPGIAVQDEESVDWPVRTVRDGREMLIDGLRKL 726

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTY----------------------------------- 770
                +  H K P+     E                                         
Sbjct: 727  REEKEGEHAKAPEGRDAEENAFMELYRYFYCSDEHREKVRQLVDAAFYSYEERGIGRAAA 786

Query: 771  ----------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
                      S + ++Q  +  YA + +  L+L      + + +  D G LFH  I    
Sbjct: 787  RALYGQSLQGSVTRLEQFASCAYAHFLKYGLELMERQ--EYELEAVDMGNLFHQSIDRCF 844

Query: 821  KKRINKNTPEI-----------NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS--F 867
                 +                   + ++ + +          +        +I+    +
Sbjct: 845  AVMKERGQDWRGLTEEGRKQLVKECVARVTEEYGNTIMASSARNAYLAGRVERITDRTIW 904

Query: 868  LEHEEKIQSSIEKIFVNIPAK-------MAI---ESIGIHLTGFADRIDLLKSGFVD--- 914
               E+  +   E     +          M I   E   + L G  DR+DL +        
Sbjct: 905  ALAEQVKKGDFEPTGFEVSFSAIDNLKAMRISLSEDEELQLRGRIDRLDLCEDEQHVYVK 964

Query: 915  ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRLKQKFKI 971
            I DYK+G            +  QL +   A           ++V  A +FY  +      
Sbjct: 965  IIDYKSGTTSFDLAALYYGLQLQLVVYMDAAVEMEERNHPDKEVVPAGIFYYHIN----- 1019

Query: 972  DCITNDKKKYSADELSEKSLKNLI 995
            D + + ++  + +E+ ++ L+ L 
Sbjct: 1020 DPLADKQEGMTVEEIEKQILRQLR 1043


>gi|15892473|ref|NP_360187.1| hypothetical protein RC0550 [Rickettsia conorii str. Malish 7]
 gi|81528292|sp|Q92I70|Y550_RICCN RecName: Full=Uncharacterized protein RC0550
 gi|15619629|gb|AAL03088.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 838

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 132/709 (18%), Positives = 261/709 (36%), Gaps = 103/709 (14%)

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
            P  ++    ++  E ++  EE   I+           ++ A++T +  L R     L ++
Sbjct: 204  PASKQISDGISYYEPNDIYEETKQISYI---CSRNKDRRIAIVTNNNKLKRVYCNFLDKY 260

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
               +    G  L  T    +LTS++  +    D   +  L+K+PL               
Sbjct: 261  EDLL----GNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLINCP--------TVQ 308

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
             LEL+    N+       L  L                     +E+ +E    L+D +  
Sbjct: 309  QLELMLSNKNRFISSPKYLLQL------------------QFDNEDIREYCRNLIDILF- 349

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                          T    +I     LT    + +        P +W +E G  L    +
Sbjct: 350  --------------TDTPHNIQAILTLTKEITEKLL-------PTIWEKEGGAELLEFLT 388

Query: 590  KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
             +          +  ++  I + L+       K   ++++ I    +  L  FD +IL  
Sbjct: 389  NLTAYSKYINSTDKKDFPKIFSFLLSNIKYY-KNTDAASIIIGRPEDLALCEFDLIILPH 447

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
             N   W  +   +P+LS+     LN+   E      +  F +    + ++   + + +  
Sbjct: 448  FNNENWTLSAKAHPWLSKQALQILNIDYDEIAPTLYSDYFNLFLQNKQIVILNAKKYDGK 507

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
             ++ S     L +  G+    +L      Y      +D   K  + K  +   P  + P 
Sbjct: 508  LSVPSNLF--LKLEKGSVSPRDLITGSSNY------MDTVVKPRYDKSIEIHSP--SFPT 557

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRI 824
            T S +EI+ LI +PY  YA++IL L    H  ++P  +D G L H ++ E  K    + I
Sbjct: 558  TLSVTEIETLIKNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYDKQYI 617

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            N N  +  + +  I +       LP +    W+      S +F+  + + + + ++I+  
Sbjct: 618  NLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFE 677

Query: 885  IPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
               ++ +      I + G ADRI++ KS  + I DYKTG  P K+  +  + PQL +E+ 
Sbjct: 678  TKGELRLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESL 737

Query: 943  ALKAGSFSQIDCRKVAN----------------------LFYIRLKQKFKIDCITNDKKK 980
             L    F++ +   +                        + Y+++      +   +  + 
Sbjct: 738  MLLENGFTKCNSLSLLCHPQPLLCYSRESRNPVINNNITIAYVKITS---TEPYVHTTEI 794

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
              + E   +    L++++      +  F   L LS+     ++Y HL+R
Sbjct: 795  TLSIETLNRHKAGLVKLLEHYITNQF-FSYDLNLSK----YNDYLHLSR 838



 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 44/219 (20%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F +     +++    +              V I +P   +  EL+    +    K   LP
Sbjct: 7   FLKSFAEYIIDKLGKD------------TKVQIILPNNFSCLELKKILTDKYKIK---LP 51

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
           II     ++ +K  +D          +S I+ LL L+ +I  ++                
Sbjct: 52  IIIPFNSLISKKIDSDY---------ISKIEELLILSSIITEYKE--------------- 87

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
            LP++   ++  A+ L  + + +         +  ++      +W     FL+     W 
Sbjct: 88  -LPLNKNESLKAAELLRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCFLRWQ 143

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
           E +      +   Y++ L++ E   +  G    +I+AG 
Sbjct: 144 EEISFTQKQTKAVYKLKLLQEEIIKIKTG-HKQVILAGI 181


>gi|212640055|ref|YP_002316575.1| ATP-dependent nuclease, subunit B [Anoxybacillus flavithermus WK1]
 gi|212561535|gb|ACJ34590.1| ATP-dependent nuclease, subunit B [Anoxybacillus flavithermus WK1]
          Length = 1167

 Score =  209 bits (531), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 129/1005 (12%), Positives = 272/1005 (27%), Gaps = 146/1005 (14%)

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW-------LLAAD 186
              L+L    A+     + L  ++   +        L     E+                 
Sbjct: 117  EQLTLFRKAADKRGFIEQLEQMLTEYKRYCVTPATLKQ-TEEQLRRHATANETVLADKLK 175

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
               +  + + +++            + L+  +  H     +  I + G     P    ++
Sbjct: 176  DTAMIFEQFEQQMAHHYVD--SEDYLRLLAEKIRHSSYMKRARIYMDGFYEFTPQEYMVI 233

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              +  H     V   LD            +   ++     T+ T+ Q     L + + I+
Sbjct: 234  EQLFIHCPHVTVALTLDAPY--------EQLPDDLHVFRNTWRTYAQLRDIALQNGVPIE 285

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            + +  R          R +       P                   +K    + + EA  
Sbjct: 286  KVEQLRHNVRHKHEELRHLEAHYDDRPVC---------------KWEKQTEAIIIGEATT 330

Query: 367  EREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLS 422
             R E   IA  +   + +     +  AL+  +    R V       + I   I    P+ 
Sbjct: 331  RRAEIEGIAREIIRLVRDEGYRYRDIALLIRNVGDYRNVLKTVFADYRIPYFIDEKEPML 390

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK-NALELVALRGNKN 481
                   L + + A+     + A+   VK           +  R   + LE   L     
Sbjct: 391  DHPFIEWLRASMEAVRTNFRYEAVFRAVKTDFFFHLDQPVHDMRMAMDQLENYVLAFGIQ 450

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE--EDKELAVLLVDHILQCITPLVTYKT 539
                 +  +    +     +       +    +  E ++L +  +  + + +    T + 
Sbjct: 451  GDKWTEHWTYRKYKGLEGVHAPQTDEEKRYEQQLNEWRKLVISPLLVLQKRLKQAKTGRE 510

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
               +           +                +     E+  +    L  + +E      
Sbjct: 511  QCEALYAYAEHLQIPQKLERLRDEAEERGDLSVARH-HEQVWQAFIDLLDQYVEILGDET 569

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   ++ II    +          +  + I     SRL N     L G+NEGV P    
Sbjct: 570  LSLETFLTIIETGFESLQFSLVPPATDQVLIAHFDRSRLSNIRCTFLVGVNEGVIPMRKN 629

Query: 660  KNPFLSRVMQSDL-------NLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPT- 710
             +  LS   +  L          + E+ + +    +     +   L  T +L      T 
Sbjct: 630  DDGMLSETDRELLYHYSLHVAPASRERMLDEPFLLYLALVSSSERLYVTYALSNEQEKTL 689

Query: 711  IASRWLQRL---------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY--KRPKP 759
            + S +++RL         +  G   F   L+++     +    L    +Q     ++   
Sbjct: 690  LPSMFIKRLTDMFPNVTKMQWGTDPFLLPLQQQLAYVTNDVATLGPLVQQLEAWKRQYAI 749

Query: 760  FPPLEAQPRT-----------------------------------------YSFSEIKQL 778
             P                                                  S S ++  
Sbjct: 750  EPMWWDVYNAYVQHEQWKERIAVVVRALFYENRAKRLNKQLAKELYGKKVKASISRMETF 809

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN------ 832
               P+A +A   LKL     F+      D G LFH  +  +  +   +  P         
Sbjct: 810  NRCPFAHFAAHGLKLKERTVFQ--LKAPDMGQLFHQALKVIADRLRQEQLPWSQLSKQQC 867

Query: 833  -----HLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS--HSFLEHEEKIQSSIEKIFVNI 885
                   ++QI     ++  L  H     +     I    + +  E   +S    I V +
Sbjct: 868  EQLSYEAVEQIAPYIQQEVLLSTHRYRYMKKKLQTIMTKATTVLSEHAKRSGFVPIGVEL 927

Query: 886  PAKM--AIESIGIHLT--------GFADRIDL--LKSGF-VDITDYKT-GDNPKKETAQK 931
                   +  +   L+        G  DR+D    + G  + + DYK+            
Sbjct: 928  GFGDGEPLPPLTFTLSDGTVLQFVGRIDRVDQAMSEQGVLLRVIDYKSKQKTLDLTEVYY 987

Query: 932  LIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  Q+      +   +   +      A + Y  +      + +    +     EL +K 
Sbjct: 988  GLALQMLAYLDIVLEYAEKLVGTSAFPAGVLYFPI-----HNPMMKVNEWLDEHELEKKF 1042

Query: 991  LKNL---------IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026
            L+            + V L+    +P  S L +  + N    +  
Sbjct: 1043 LEQFKMGGYVLADEKTVRLMDEHVEPGTSSLIIPVRLNKNGTFAQ 1087


>gi|192361853|ref|YP_001982656.1| hypothetical protein CJA_2193 [Cellvibrio japonicus Ueda107]
 gi|190688018|gb|ACE85696.1| conserved hypothetical protein [Cellvibrio japonicus Ueda107]
          Length = 972

 Score =  209 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 99/760 (13%), Positives = 215/760 (28%), Gaps = 61/760 (8%)

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             E    + S N          L K      +  E    L    +    +  +I+ +    
Sbjct: 210  GEFHARLASLNLVTQEQAMARLLKAYQQGVLSPEPAIWLLGFDDIPPLQQQLIATASHTY 269

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
                    D              ++      ++   A +    + + +    +  A +  
Sbjct: 270  QLIPGARVDKARLARTQCITSEQEMLAAARWSQAILAENAQAMIGIIVPNLGQCRAQLER 329

Query: 395  DRNLARRVKLELT---RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
                       L    RF +  + SAGIPL +T   +    LL           I  L+ 
Sbjct: 330  AFTSVFEPLSVLPEHMRFTLPFNFSAGIPLGSTPLVAASLELLGLYQNHWPMEDICQLLL 389

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             P       E  L      L        +      DL+                     +
Sbjct: 390  SPFWGHADAELVLRS---QLVNQLRELGRFHISGSDLRYWAQKL------------ATPK 434

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                  E A  L +     +  L+  +  +  + G    S W++L    LQ++     R+
Sbjct: 435  AGGNTAETANRLAE--ETFLNYLLHLEAQRRDSFGKHPASYWSELFNRLLQHLDWPGERR 492

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
            L +   ++  +    L          ++ +  E +  + ++      + +   S  + IL
Sbjct: 493  LDSQEHQQLAQWNQLLEDFAQLDACGLQLSYGEALQHLRQIAAKTPFQAQTPLSP-IQIL 551

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA---HDF 688
            G LE   L F    + GL+   WP   + NP L   +Q    +  A              
Sbjct: 552  GALEGSGLVFSHCWVMGLHHRQWPAAASPNPLLPINLQRQQQMPHASAERELVFARSLTQ 611

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                    ++++ +   ++     S  ++ + +        +       Y     +    
Sbjct: 612  HYRQCAGQVVFSCASSLDDQELSPSALIRDIPLTPLEQLVPDANSLLADYWQQLLQSRQL 671

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                    P      + +      S  K+    P+  +AR  L               +R
Sbjct: 672  EAIEDNTGPAV---GKDENIRGGASIFKEQAACPFNAFARLRLGARIPEAPVTGFSAIER 728

Query: 809  GTLFHNIITELIKKRINKNTPEINHL--MKQIIDSHFEKENLPPHIDI----------IW 856
            G + HN + +L +   ++ +        +++ + +      +                + 
Sbjct: 729  GNMLHNALADLWRWLRDQASLLALDEESLQKQLHTFVNTAVMDTARLRGSSVSAFYTQLE 788

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL-KSGFVDI 915
            +     +   +L+ E +   +   + +  P ++    I + L    DRID L ++  + +
Sbjct: 789  QERLQALLREWLQRERER-PAFTVVAIEHPIEVTYAGIPLRL--RIDRIDQLIETNELLL 845

Query: 916  TDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL--------K 966
             DYKTG         ++  +PQL L A          +   +   + + ++         
Sbjct: 846  IDYKTGHPSINSWFGERPDEPQLPLYAL---------VCPPQPGAIAFAQINAHGCEWKG 896

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                       K      +      ++L  +      G  
Sbjct: 897  TGQLDINHPGIKPAGDWAQQLSDWQQHLSRLAESFLAGTA 936


>gi|157964483|ref|YP_001499307.1| endonuclease [Rickettsia massiliae MTU5]
 gi|157844259|gb|ABV84760.1| RecB family exonuclease [Rickettsia massiliae MTU5]
          Length = 846

 Score =  209 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 133/709 (18%), Positives = 260/709 (36%), Gaps = 103/709 (14%)

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
            P  ++    ++  E ++  EE   IA           ++ A++T +  L R     L ++
Sbjct: 212  PASKQISDGISYYEPNDIYEETKQIAYI---CSRNKDRRIAIVTNNNKLKRVYCNFLDKY 268

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
               +    G  L  T    +LTS++  +    D   +  L+K+PL               
Sbjct: 269  EDLL----GNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLINCP--------TVQ 316

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
             LEL+    N+       L  L                     +E+ +E    L+D +  
Sbjct: 317  QLELMLSNKNRFISSPKYLLQL------------------QFDNEDIREYCRNLIDILF- 357

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                          T    +I     LT    + +        P +W +E G  L    +
Sbjct: 358  --------------TDTPHNIQAILTLTKEITKKLL-------PTIWEKEGGAELLEFLT 396

Query: 590  KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
             +          +  ++  I + L+       K   ++++ I    +  L  FD +IL  
Sbjct: 397  NLTAYSKYINSTDKKDFPKIFSFLLSNIK-HYKNTNTTSIIIGRPEDLALCEFDLIILPH 455

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
             N   W  +   +P+LS+     LN+   E      +  F +    + ++   + + +  
Sbjct: 456  FNNENWTLSAKAHPWLSKKALQILNIDYDEIAPTLYSDYFNLFLQNKQIVILNAKKYDGK 515

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
             ++ S     L +  G+    +L      Y      +D   K  + K  +   P  + P 
Sbjct: 516  LSVPSNLF--LKLEKGSVSPRDLITGSSNY------MDTVVKPRYDKSIEIHSP--SFPT 565

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRI 824
            T S +EI+ LI +PY  YA++IL L    H  ++P  +D G L H ++ E  K    + I
Sbjct: 566  TLSVTEIETLIRNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYDKQYI 625

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            N N  +  + +  I +       LP +    W+      S +F+  + + + + ++I+  
Sbjct: 626  NLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFE 685

Query: 885  IPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
               ++ +      I + G ADRI++ KS  + I DYKTG  P K+  +  + PQL +E+ 
Sbjct: 686  TKGELRLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESL 745

Query: 943  ALKAGSFSQIDCRKVAN----------------------LFYIRLKQKFKIDCITNDKKK 980
             L    F++ +   +                        + Y+++      +      + 
Sbjct: 746  MLLENGFTKCNSLSLLCHPQPLLCYSRESGNPVMNNNITIAYVKITS---TEPYVQTTEI 802

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
              + E   +    L++++       + F   L LS+     ++Y HL+R
Sbjct: 803  ALSIETLNRHKAGLVKLLEHYIT-NKCFSYDLNLSK----YNDYLHLSR 846



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 73/219 (33%), Gaps = 44/219 (20%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F +     +++                   V I +P   +  EL+    +    K   LP
Sbjct: 15  FLKSFAEYIIDKLGKG------------TEVQIILPNNFSCLELKKILTDKYKIK---LP 59

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
           II     ++ +K  +D          +S I+ LL L+ +I  ++                
Sbjct: 60  IIIPFNSLISKKNDSDY---------ISKIEELLILSSIITEYKE--------------- 95

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
            LP +   ++  A+ L  + + +         +  ++      +W     FL+     W 
Sbjct: 96  -LPFNKNESLKAAELLRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCFLRWQ 151

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
           E +      +   Y+  L++ E    +K     +I+AG 
Sbjct: 152 EEISCTQKQTKAVYKFKLLQ-EKIIKIKKGHKQVILAGI 189


>gi|295109448|emb|CBL23401.1| ATP-dependent nuclease subunit B [Ruminococcus obeum A2-162]
          Length = 1112

 Score =  209 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 106/924 (11%), Positives = 242/924 (26%), Gaps = 133/924 (14%)

Query: 150 KNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
             +  +I      E   E++   + + +      +    + +  + + E L +   +S  
Sbjct: 120 DEVKSLISEFMQYEVHEEEMDKMINDAEGKPLLQMKLKDVSVLYQAFREYLSDHFMTSEE 179

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                ++  E     K     +I+ G TG  P    ++  +        V   +D     
Sbjct: 180 VL--EVLAKEIPFSQKLRGSTVILDGYTGFTPVQHTVIRELLAVCKKVSVTVTMDV---- 233

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
                  E           Y +H      K+L  L               E        S
Sbjct: 234 -----REELPAKGKPHELFYMSH------KMLRSL-------SEFTKDMEEPVWIKSGSS 275

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---- 384
             F           ++   +  +  K   +V + +A     E    A  +   + +    
Sbjct: 276 SRFADSPALGFLEQNLFRYRRRSYDKEQKEVQIFQAGTPEREMQETARRIIRLVRDSQYR 335

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
             + + +           +      GI   I     +        + + L  + +   + 
Sbjct: 336 YGQIAVITGNLEEYGSIARHVFEEAGIPFFIDEKHSILMNPFVEYVRAALEMVSQGFSYE 395

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
           ++   ++  ++             + LE   L    + +   D   + L R    ++   
Sbjct: 396 SVFRYLRCGMSDIS------RSETDRLENYVLALGIHGFRKWDEGWVRLSRDMDPESIME 449

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
           + + + R   E + LA                       +     ++    L        
Sbjct: 450 LNNIRERFVTEVRSLAEGFAGKKKTVAEYSRCLYEFIVQSRVQEKLAVQELLFKQHGDRA 509

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                       + +    + +L  K++      K +A E+  ++   +    V      
Sbjct: 510 --------MEKEYAQIYGIVMNLLDKMVSILGEEKVSAEEYRQLLETGMGQAKVALIPPG 561

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAE 678
              + +     +RL +   L   G+NEG  PKNT     L+ + +  L           +
Sbjct: 562 IDQVLVGDMERTRLKDIRALFFAGVNEGCIPKNTESGGILTEMDRDFLGGQGIELAPGPK 621

Query: 679 KYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
           + +        +     +  L  + S+           +L R +            +  Q
Sbjct: 622 ELMNMQRFYLYLNFTKPSERLCLSYSMSNGKGEATGPAFLIRTVQTLFPKLKTERAEEPQ 681

Query: 737 CYLDWTRKLDYTTKQ--------------------------PHYKRPKPFPPLEAQPRT- 769
             L+     +   +                               R      +EA     
Sbjct: 682 NELELIETPNTAVEYFLSGLTDEEKRKDNLIFAELYSWYLNSPIYRTATKKLIEAAFIRK 741

Query: 770 -------------------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                               S + +++     +A + +  L++      + +    D G 
Sbjct: 742 PVDQISKSVAKALYGEVSPNSATRLERFSACAFAHFLKYGLEVKER--AEYEFKAMDMGN 799

Query: 811 LFHNIITELIKKRINKNTPE---INHLMKQIIDSHFEKENLP--------PHIDIIWRHL 859
           + H  + +   +   +        + +   I D   ++ +             +      
Sbjct: 800 VIHQALEDFAAELHRRKLDWSVLSDEMRDAIADECLDRISADYGNTILQSSARNRYMIER 859

Query: 860 FHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL--LKSGFVD- 914
             +I     +   E+      +     +     I        G  DR+D+          
Sbjct: 860 TRRILRRTVWALQEQLRNGKFQPEGFEVS----IGG------GRIDRLDIMKTDDKVYVK 909

Query: 915 ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRLKQKFKI 971
           I DYKTG       +    +  QL +   A       +    +V  A +FY  +K     
Sbjct: 910 IIDYKTGNTTFDLVSIYYGLQMQLVVYMDAAVKAEQRKYPDAEVKPAGIFYYNVK----- 964

Query: 972 DCITNDKKKYSADELSEKSLKNLI 995
           D +   + +   D L  +  K L 
Sbjct: 965 DPMLQKEMEDDLDGLDPEIFKKLK 988


>gi|225020701|ref|ZP_03709893.1| hypothetical protein CORMATOL_00708 [Corynebacterium matruchotii ATCC
            33806]
 gi|224946647|gb|EEG27856.1| hypothetical protein CORMATOL_00708 [Corynebacterium matruchotii ATCC
            33806]
          Length = 1079

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 125/1050 (11%), Positives = 288/1050 (27%), Gaps = 146/1050 (13%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK---KSTILPIIKSLG 82
            +   L++              + I   +K+A   LR   +        KS    +++S+ 
Sbjct: 71   VTSLLLDTVARRIEAGEDPERILIVAASKQAASRLRRGIVARVATSHYKSAGT-MVRSVH 129

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
             +              L   ++  ++   +  L+        +  ++  P+ P+++    
Sbjct: 130  SLAFALLRRMRDEKLRL---ITGAEQDAVIRELLQGHSELTGEGQQEQGPQVPITIWPEE 186

Query: 143  AN----AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                   +  A+ L D +          EDL  L  E +   W+ A  FL+     + + 
Sbjct: 187  CRDGIVMVGFARGLRDFLLRTVERGLGPEDLERLGEEHHRPMWVAAGKFLRE----YEQV 242

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
            +      S    ++  M  E +   + +   +I+  +    P +A L++   +  N A++
Sbjct: 243  MSLGGTHSLSASELVSMALEHDVPPEISYSTVIVDDAQHLDPKSAELVARFIDQANFAVI 302

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
                D       +     +       +     H  Y +                      
Sbjct: 303  --AGDPDQSVFRFRGARPQFLQHHPVDHELRLHTSYRVQA-------------------- 340

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                                          +   +   +        +    A  I    
Sbjct: 341  ------------------------RPGAPGVHFHRADSTGNMFEFVADRIRRARLI---- 372

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAI 437
                D   +  A++     +   ++  L   G+ + I    I LS     S L   + A+
Sbjct: 373  ---DDVQWRDIAVVVRSVGMITPIRRALLAAGVPVHIDPTDIVLSQQRIVSALILAVRAV 429

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                    +  L   P+                   +   G          +  +     
Sbjct: 430  HHGLTLAELEELALGPIGGADAVTLRRLLRGLRQVELRRTGAVADAFQTPTRRSLEVLSE 489

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                    P   + + +   +    ++  I Q I       + +       S ++  K  
Sbjct: 490  LVLEPEPDPGLVAEVEQVLTDREQDILGRIRQVIAAGRQGGSVEEVLWEIWSATNLDKHL 549

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                        +   +L         +  + +     +           I  + +    
Sbjct: 550  SAVSMRGGAAGSQADRDLDAVMALFDAAGDWVERRPNSTIDAF----ITHIEEQELPTGV 605

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----- 672
               ++     + I+    +    + T+I+ G+ E  WP  +       +    DL     
Sbjct: 606  RDRRLVVPDAVNIVTAHATSGQEWHTVIICGVQEDSWPSLSETGTLFGQEELVDLIDDGI 665

Query: 673  ----NLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN--IPTIASRWLQRLLVLGGT 725
                 +    + + +    F MA     + +   ++ + +   P   SR+++  +     
Sbjct: 666  APGTTIARVTEQLREERRLFHMATSRATNTLIITAVDDPDAAEPQEPSRFVRDYMQPDSP 725

Query: 726  DFFDNLKKR--------GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            +     ++R            L +TR L         +R    P    + R  +  ++ +
Sbjct: 726  EDPWEPQERVVGEQQIDVDNPLTYTRLLSAPAIVAELRRVVTNPDETQRARNQAARQLAR 785

Query: 778  LI------NDPYAVY----------------------ARRILKLDFIP----HFKKDPDR 805
            L         P   +                      A  +  L          ++    
Sbjct: 786  LAEAGVPGAHPDQWWGIAGPSTTRSLPVSSLSPSRIEAGMVCPLRATMSRIFTEEELAFP 845

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RG L H     +          + +    +I+D++ E    P  +       +  +  
Sbjct: 846  LLRGRLLHAFAEAVALNV------DSDVARLKIMDAYQEILAAPTWLRSYRLDTWRTVLD 899

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NP 924
                  E  +   E++ V + A++ I   G+ L G  DR++    G   I D+K+G  +P
Sbjct: 900  RTKMWIETHRHIFEQVGVEVEAEVTIA-EGMKLRGRIDRLEKTMDGDYHIVDFKSGTNSP 958

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQID---------CRKVANLFYIRLKQKFKIDCIT 975
             ++T    I  QL      L  G+F                V     +    +     I 
Sbjct: 959  SEKTIADHI--QLLTYQLILHHGAFDGTKIRTARSTESGMTVDGATLVY--PEKDTKNIW 1014

Query: 976  NDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
            +  +    +E   +    L +++  L+  E
Sbjct: 1015 SITQAAKTEEQLAEFENQLPDLLQELRGPE 1044


>gi|119475988|ref|ZP_01616340.1| hypothetical protein GP2143_05345 [marine gamma proteobacterium
            HTCC2143]
 gi|119450615|gb|EAW31849.1| hypothetical protein GP2143_05345 [marine gamma proteobacterium
            HTCC2143]
          Length = 934

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 109/858 (12%), Positives = 248/858 (28%), Gaps = 100/858 (11%)

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD--I 305
               +    A++ P        A + T+ +    + S+    +       A L++++D  I
Sbjct: 96   VAESSYGSALLRPSATAQQAIAAFRTLVDWRQEVRSAALRATLLTSDDSAALMNWIDQFI 155

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDT-------------SDMRNTDILENKIPNI 352
               D  R    +              L                             +   
Sbjct: 156  DLCDKNRWLVSAQIPAQLLNAFQTGSLSHCGEILGVGFEDIVPLHQALLDAAGNFVLEQQ 215

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLEL----- 406
            +   + V  +  D   +E  + A+  + ++ ++     A++  +    R V   +     
Sbjct: 216  RHDPAAVKTVVCDTSEQELQAAAVWAKQAIKNDPAATVAIVVPELTAQRHVVQRIVQEVF 275

Query: 407  --------------------------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                                          ++ + SAG PL+     +     L   F  
Sbjct: 276  EPGYNEPSCGDNNDNNDKASIISLSSAPRNLSFNFSAGYPLTDAPVIAAALDALALGFVK 335

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             D   +  + + P       +     + + L                L+ L         
Sbjct: 336  LDSETMVRICQSPFYCVSEADNE---SVSQLVSKLFGEKAFELSTAKLRQLASQTA---- 388

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                         ++    +  +       +  + T   + ++       S+W  L    
Sbjct: 389  ------------DKKSAGASEAVAWPFSDALQNIATLTRD-HTIRRPRPASEWILLLQGI 435

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
            L  V     R+L ++ F++  +    + S  +        +  E +  +   I G  V  
Sbjct: 436  LNTVGWPGLRRLDSIEFQQVAQWPQIIQSLQMLDDVLPPMSFSEVVGQLHS-IAGRQVFQ 494

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAE 678
                 S+L +LGTLE+  L+F  L L  +++  WP + + NP L   +Q    +   +AE
Sbjct: 495  PQTADSSLQVLGTLEAAGLHFSHLWLTSMSDQSWPPSPSPNPLLPYSLQRQQGMPHASAE 554

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
            + +  A    +    +  ++   S+   ++ P   S    R   +               
Sbjct: 555  RELDYARSLTDRFLHSADIMIVSSVSVIDDTPATISALFARFPQIQMDALLGRPLSSLLP 614

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
              +  R+   +     Y           +      +        P+  +    L +  +P
Sbjct: 615  LTEIRRRFLESKLTEEYLPGDAPILQADERVRGGATLFASQSACPFRAFLSHRLGVRGLP 674

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ----------IIDSHFEKEN 847
              +   +  DRG+L H     + ++  ++ T    +  +Q           +    ++ +
Sbjct: 675  VAEIGLNAADRGSLLHRACELIWQQLKSQKTLLALNNSEQMSLCEETSQYAVRELDQRRS 734

Query: 848  LPPHID--IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
            L        +       + +++L  E +    I K      A+   +   + L    DRI
Sbjct: 735  LHLGARYQRLECERLKLLLNTWLNFERERGDFIVK---ETEARKVFQHGHLKLETRIDRI 791

Query: 906  DLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFS----QIDCRKVANL 960
            D L  G + + DYKT      +   ++  +PQL L    ++    +         ++   
Sbjct: 792  DQLADGSLAVIDYKTSTTSIARWWGERPEEPQLPLYGMLVELAGDAVSGVGFAELRIEGC 851

Query: 961  FYIRLKQKFKIDCITN-------DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
                +  +   +           D    + ++L     K L  +      G+        
Sbjct: 852  ELKGIGDEDSPEAALRWQDKVKNDASVLNWEQLKRHWEKVLTALANDFVAGKAAVDPRNA 911

Query: 1014 LSEKSNIQSEYDHLARVA 1031
                +    ++    RV 
Sbjct: 912  PQ--TCQYCDFSSACRVD 927


>gi|165933138|ref|YP_001649927.1| ATP-dependent nuclease subunit B [Rickettsia rickettsii str. Iowa]
 gi|165908225|gb|ABY72521.1| ATP-dependent nuclease subunit B [Rickettsia rickettsii str. Iowa]
          Length = 838

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 133/709 (18%), Positives = 261/709 (36%), Gaps = 103/709 (14%)

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
            P  ++    ++  E ++  EE   I+           ++ A++T +  L R     L ++
Sbjct: 204  PASKQISDGISYYEPNDIYEETKQISYI---CSRNKDRRIAIVTNNNKLKRVYCNFLDKY 260

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
               +    G  L  T    +LTS++  +    D   +  L+K+PL               
Sbjct: 261  EDLL----GNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLINCP--------TVQ 308

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
             LEL+    N+       L  L                     +E+ +E    L+D +  
Sbjct: 309  QLELMLSNKNRFISSPKYLLQL------------------QFDNEDIREYCRNLIDILF- 349

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                          T    +I     LT    + +        P +W +E G  L    +
Sbjct: 350  --------------TDTPHNIQAILTLTKEITEKLL-------PTIWEKEGGAELLEFLT 388

Query: 590  KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
             +          +  ++  I + L+       K   ++++ I    +  L  FD +IL  
Sbjct: 389  NLTTYSKYINSTDKKDFPKIFSFLLSNIKYY-KNTDAASIIIGRPEDLALCEFDLIILPH 447

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
             N   W  +   +P+LS+     LN+   E      +  F +    + ++   + + +  
Sbjct: 448  FNNENWTLSAKAHPWLSKKALQILNIDYDEIAPTLYSDYFNLFLQNKQIVILNAKKYDGK 507

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
             ++ S     L +  G+    +L      Y      +D   K  + K  +   P  + P 
Sbjct: 508  LSVPSNLF--LKLEKGSVSPRDLITGSSNY------MDTVVKPRYDKSIEIHSP--SFPT 557

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRI 824
            T S +EI+ LI +PY  YA++IL L    H  ++P  +D G L H ++ E  K    + I
Sbjct: 558  TLSVTEIETLIRNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYNKQYI 617

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            N N  +  + +  I +       LP +    W+      S +F+  + + + + ++I+  
Sbjct: 618  NLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFE 677

Query: 885  IPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
               ++ +      I + G ADRI++ KS  + I DYKTG  P K+  +  + PQL +E+ 
Sbjct: 678  TKGELRLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESL 737

Query: 943  ALKAGSFSQIDCRKVAN----------------------LFYIRLKQKFKIDCITNDKKK 980
             L    F+Q +   +                        + Y+++      +   +  + 
Sbjct: 738  MLLENGFTQCNSLSLLCHPQPLLCYSRESRNPVINNNITIAYVKITS---TEPYVHTTEI 794

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
              + E   +    L++++      +  F   L LS+     ++Y HL+R
Sbjct: 795  ALSIETLNRHKAGLVKLLEHYITNKF-FSYDLNLSK----YNDYLHLSR 838



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 44/219 (20%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F +     +++    +              V I +P   +  EL+    +    K   LP
Sbjct: 7   FLKSFAKYIIDKLGKD------------TKVQIILPNNFSCLELKKILTDKYKIK---LP 51

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
           II     ++ +K  +D          +S I+ LL L+ +I  ++                
Sbjct: 52  IIIPFNSLISKKNDSDY---------ISKIEELLILSSIITEYKE--------------- 87

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
            LP++   ++  A+ L  + + +         +  ++      +W     FL+     W 
Sbjct: 88  -LPLNNNESLKAAELLRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCFLRWQ 143

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
           E +      +   Y++ L++ E   +  G    +I+AG 
Sbjct: 144 EEISFTQKQTKAVYKLKLLQEEIIKIKTG-HKQVILAGI 181


>gi|157828426|ref|YP_001494668.1| hypothetical protein A1G_03115 [Rickettsia rickettsii str. 'Sheila
            Smith']
 gi|157800907|gb|ABV76160.1| hypothetical protein A1G_03115 [Rickettsia rickettsii str. 'Sheila
            Smith']
          Length = 838

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 133/709 (18%), Positives = 261/709 (36%), Gaps = 103/709 (14%)

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
            P  ++    ++  E ++  EE   I+           ++ A++T +  L R     L ++
Sbjct: 204  PASKQISDGISYYEPNDIYEETKQISYI---CSRNKDRRIAIVTNNNKLKRVYCNFLDKY 260

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
               +    G  L  T    +LTS++  +    D   +  L+K+PL               
Sbjct: 261  EDLL----GNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLINCP--------TVQ 308

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
             LEL+    N+       L  L                     +E+ +E    L+D +  
Sbjct: 309  QLELMLSNKNRFISSPKYLLQL------------------QFDNEDIREYCRNLIDILF- 349

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                          T    +I     LT    + +        P +W +E G  L    +
Sbjct: 350  --------------TDTPHNIQAILTLTKEITEKLL-------PTIWEKEGGAELLEFLT 388

Query: 590  KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
             +          +  ++  I + L+       K   ++++ I    +  L  FD +IL  
Sbjct: 389  NLTTYSKYINSTDKKDFPKIFSFLLSNIKYY-KNTDAASIIIGRPEDLALCEFDLIILPH 447

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
             N   W  +   +P+LS+     LN+   E      +  F +    + ++   + + +  
Sbjct: 448  FNNENWTLSAKAHPWLSKKALQILNIDYDEIAPTLYSDYFNLFLQNKQIVILNAKKYDGK 507

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
             ++ S     L +  G+    +L      Y      +D   K  + K  +   P  + P 
Sbjct: 508  LSVPSNLF--LKLEKGSVSPRDLITGSSNY------MDTVVKPRYDKSIEIHNP--SFPT 557

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRI 824
            T S +EI+ LI +PY  YA++IL L    H  ++P  +D G L H ++ E  K    + I
Sbjct: 558  TLSVTEIETLIRNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYNKQYI 617

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            N N  +  + +  I +       LP +    W+      S +F+  + + + + ++I+  
Sbjct: 618  NLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFE 677

Query: 885  IPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
               ++ +      I + G ADRI++ KS  + I DYKTG  P K+  +  + PQL +E+ 
Sbjct: 678  TKGELRLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESL 737

Query: 943  ALKAGSFSQIDCRKVAN----------------------LFYIRLKQKFKIDCITNDKKK 980
             L    F+Q +   +                        + Y+++      +   +  + 
Sbjct: 738  MLLENGFTQCNSLSLLCHPQPLLCYSRESRNPVINNNITIAYVKITS---TEPYVHTTEI 794

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
              + E   +    L++++      +  F   L LS+     ++Y HL+R
Sbjct: 795  ALSIETLNRHKAGLVKLLEHYITNKF-FSYDLNLSK----YNDYLHLSR 838



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 44/219 (20%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F +     +++    +              V I +P   +  EL+    +    K   LP
Sbjct: 7   FLKSFAKYIIDKLGKD------------TKVQIILPNNFSCLELKKILTDKYKIK---LP 51

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
           II     ++ +K  +D          +S I+ LL L+ +I  ++                
Sbjct: 52  IIIPFNSLISKKNDSDY---------ISKIEELLILSSIITEYKE--------------- 87

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
            LP++   ++  A+ L  + + +         +  ++      +W     FL+     W 
Sbjct: 88  -LPLNNNESLKAAELLRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCFLRWQ 143

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
           E +      +   Y++ L++ E   +  G    +I+AG 
Sbjct: 144 EEISFTQKQTKAVYKLKLLQEEIIKIKTG-HKQVILAGI 181


>gi|238018400|ref|ZP_04598826.1| hypothetical protein VEIDISOL_00226 [Veillonella dispar ATCC 17748]
 gi|237864871|gb|EEP66161.1| hypothetical protein VEIDISOL_00226 [Veillonella dispar ATCC 17748]
          Length = 1158

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 117/978 (11%), Positives = 248/978 (25%), Gaps = 134/978 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
            L L          +  L  +            DL                  L I    +
Sbjct: 108  LGLLEQATKRPEFSSVLQQLFSEFRAFRVGPTDLERGAESVKNKVLQKKLRELAICMAAY 167

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             E +              ++ A  +  +      + I G     P    L+ T+ +    
Sbjct: 168  EEEISRHGERDIDPIM-EIVEALPQSPLME-NSHVFIDGFHWFTPTHYELIYTLFDLAKE 225

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            A++   +D  +     N                  H      ++ D L  +         
Sbjct: 226  AVIT--IDLPMAPKALNLARR------------GEHLFSRPLEIYDTLVARYGTRINW-- 269

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                       +  +                          + + LI   N   EA ++A
Sbjct: 270  -----------VGFNGKRGPQIVQELEANYFTSPSKQNSTDTTIPLIRGYNREREADAVA 318

Query: 376  IALRMSLD----ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSIL 430
              +   ++       +   ++  +            TR+GI   I    P+       +L
Sbjct: 319  RRILAYVESSPEARYRDVCIMLRESETYGDTLEKVFTRYGIPHFIDRQRPMKNHPLGELL 378

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            T+L + +       ++  L+K  L                LE               L+ 
Sbjct: 379  TALFDIVRHSYSRDSMFLLLKTDLMPLTREAVDELENYV-LEFGIDHYKWERESWPYLRG 437

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                +      +       ++  +   ++     D          T         G L I
Sbjct: 438  FHEGQDEESHLDAPRRARINQARQTIMDILSPWFDFAAHSEGH--TGAEWGEQLYGLLEI 495

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
                +      ++      ++      E+    + S   +I            E + ++ 
Sbjct: 496  LQVPQRLYEWAKDAETVGDQESKAS-HEQMYNAVISFIDEISMVMKDEVLTLDEMMLLLE 554

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
              +              + I          +  + + GLN+GV+P++      +    + 
Sbjct: 555  EGLSDVNYSMIPPSLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSMGDEGLIKDKERQ 614

Query: 671  DLNL--------KTAEKYIGQAAHDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLV 721
            +L             + +         M   +  L  + +   E+      S  ++RL  
Sbjct: 615  ELADAGITLAEGALPKAFNENFLLYLAMTRASDSLTLSYASSGEDGTGLEPSLVVKRLES 674

Query: 722  LG------------GTDFFDNLKKRG--------QCYLD----------------WTRKL 745
            LG              D   +   R         + +                  W R+ 
Sbjct: 675  LGYVGKAVDIPLSIEPDTEADYVWRPLQSLSLLSERWGALFSGHEVNPLWWGLYNWARES 734

Query: 746  DYTTKQPHYKRPKPFPPLEAQ---------------PRTYSFSEIKQLINDPYAVYARRI 790
            D    +            +                   + S + +++    P+  YA+  
Sbjct: 735  DTYRPRLAEVSRGIRDNNDVPVITKDLVNGLFLSKGYMSGSVTRLERYQQCPFKFYAQYG 794

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELI-------KKRINKNTPEINHLMKQIIDSHF 843
            LKL+      +     + GT  H  +  L        K+  + N  E  +L + + D   
Sbjct: 795  LKLEPRR--VRSFGAPEIGTFLHANLERLGNYLLENNKQWRDLNEEEQQNLCRSVADEIL 852

Query: 844  EK----ENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAK-------MA 890
            ++    E               +  H  ++   E   +S  +  ++            + 
Sbjct: 853  QENQAGEETSDAYQKAIEQRVQRTLHVTVDRLVEWSKRSDFDTKYLEQDFGRQGGWDPIR 912

Query: 891  IESIG---IHLTGFADRIDL-LKSGFVD--ITDYKTGDNP-KKETAQKLIDPQLSLEAAA 943
            +       + L G  DRID   + G     + DYK+G      +     +  QL     A
Sbjct: 913  VPLGEDRYLRLIGQIDRIDEYTRDGQTYGMVIDYKSGGAHVTAQDVYYGLKLQLMTYLLA 972

Query: 944  LK-AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL------IE 996
            L+ A   +Q      A + Y  +K            +   A      + +N       +E
Sbjct: 973  LESAYGNTQGQSMTPAAVVYSYVKNPKIPADAPISYEDAVALAKESDAWQNSGYFSDDVE 1032

Query: 997  IVTLLQNGEQPFISHLRL 1014
            ++T + N    + S    
Sbjct: 1033 LLTHIDNKFLSYGSKRGP 1050


>gi|292492976|ref|YP_003528415.1| hypothetical protein Nhal_2968 [Nitrosococcus halophilus Nc4]
 gi|291581571|gb|ADE16028.1| conserved hypothetical protein [Nitrosococcus halophilus Nc4]
          Length = 912

 Score =  208 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 120/864 (13%), Positives = 234/864 (27%), Gaps = 100/864 (11%)

Query: 217  AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
              +    +     +I   S           +  A           L      +++ T   
Sbjct: 83   LLSPLQEQSLWERVIYDSSYSGALLQVPATARTAQEAWQLWHAWRL-PLQDQSLFVTEDT 141

Query: 277  KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN---VSNEMYGRSMVISKSFLP 333
            ++    +    +       +   LD   +    ++ LG                  +   
Sbjct: 142  QAFLEWARAFEHHC----QVGHWLDHARLPEAVIQMLGARQISLPATVILVGFDEYTPQQ 197

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS--AL 391
             +         +  +    Q     V  +   +  EE  S A   R  L+   ++    +
Sbjct: 198  QEFFVALVEQGVMLQALASQGKPERVMRVPLVDGVEEITSAARWARRRLEGAPREKIGVI 257

Query: 392  ITADRNLARRVKLELTRFGIN-------------IDISAGIPLSTTLHSSILTSLLNAIF 438
            +     L  +V                        +IS   PL+          +L    
Sbjct: 258  VPQLEFLRAQVVRIFDEIFHPEAVLPGREGIERAYNISLAQPLAHNPLVHTALLILELTK 317

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                 + +  L++ P       E       +A                            
Sbjct: 318  GELSLVEMGALLRSPFLGEAEREFSRRALLDAY--------------------------L 351

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
            +K            +    E A             L  +K          S S W +   
Sbjct: 352  RKTREARVSLGRLGAAAVSEGAEGAAYCCPALGERLQQFKAELAQLPARQSPSGWARSFA 411

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              LQ +     R L +   +        + S     G          I    RL+     
Sbjct: 412  RWLQLLGWPGERSLNSEEQQAVSAWRKGVQSFASLDGVVPSLKQSAAIGKFRRLLADTLF 471

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--T 676
            +P+      + ++GTLE+    FD + + GL++GVWP     NP L   +Q    L   +
Sbjct: 472  QPESPPVP-VQVMGTLEAAGERFDGVWILGLHDGVWPPAPRPNPLLPVELQRHHRLPHAS 530

Query: 677  AEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            AE+ +  A             +I +   RE +     S  +  L  +          +  
Sbjct: 531  AERELAYARMVTARLLASAPTVIVSHPCREGDSDLRPSPLIAELPPIPPEALELASIEPY 590

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
               +  T   +    +         P  +        + +K     P+  +A   L    
Sbjct: 591  THQIQLTAMGETLADRQG------PPLAKGTQVEGGTALLKAQAACPFRAFAEYRLGAQG 644

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
            +          D+G L H+ +  L ++  ++       ++        +          I
Sbjct: 645  LEEPSVGLAALDQGILIHSALHYLWERLEDQ------QILLTHTAEELQTLVAEAAKQAI 698

Query: 856  W---RHLFHKISHSFLE--------------HEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                       +  F                 ++K +     +       + +  IG  L
Sbjct: 699  AGQMAVRPQTFTERFTAIEQERLELLLLEWLEQDKQRPPFTVLHQEKSQPLNLGGIG--L 756

Query: 899  TGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAA----LKAGSFSQID 953
               ADRID L++G   I DYKTG   P     ++  +PQL L   A    + A  F+Q+ 
Sbjct: 757  ITRADRIDRLENGERVIIDYKTGRPDPHHWFGERPEEPQLPLYCIAHKEPVVAVLFAQVR 816

Query: 954  CRKVANLFYIRLKQKFKIDCITND-----KKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
              ++    Y+ + +        +D     +   + + L ++  + L  +   L      +
Sbjct: 817  RGEMK---YLGVTKAAGSVPGISDFTHVAEGPENWEGLLDQWSQVLHALAEELM---AGY 870

Query: 1009 ISHLRLSEKSNIQSEYDHLARVAE 1032
             +      KS        L R+ E
Sbjct: 871  AAVAPRDTKSCDYCALPGLCRIGE 894


>gi|34580532|ref|ZP_00142012.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28261917|gb|EAA25421.1| unknown [Rickettsia sibirica 246]
          Length = 838

 Score =  208 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 132/709 (18%), Positives = 262/709 (36%), Gaps = 103/709 (14%)

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
            P  ++    ++  E ++  EE   I+           ++ A++T +  L R     L ++
Sbjct: 204  PASKQISDGISYYEPNDIYEETKQISYI---CSRNKDRRIAIVTNNNKLKRVYCNFLDKY 260

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
               +    G  L  T    +LTS++  +    D   +  L+K+PL               
Sbjct: 261  EDLL----GNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLINCP--------TVQ 308

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
             LEL+    N+       L  L                     +E+ +E    L+D +  
Sbjct: 309  QLELMLSNKNRFISSPKYLLQL------------------QFDNEDIREYCRNLIDILF- 349

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                          T    +I     LT    + +        P +W +E G  L    +
Sbjct: 350  --------------TDTPHNIQAILTLTKEITEKLL-------PTIWEKEGGAELLEFLT 388

Query: 590  KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
             +          +  ++  I + L+       K   ++++ I    +  L  FD +IL  
Sbjct: 389  NLTAYSKYINSTDKKDFPKIFSFLLSNIKYY-KNTDAASIIIGRPEDLALCEFDLIILPH 447

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
             N   W  +   +P+LS+     LN+   E      ++ F +    + ++   + + +  
Sbjct: 448  FNNENWTLSAKAHPWLSKKALQILNIDYDEIAPTLYSNYFNLFLQNKQIVILNAKKYDGK 507

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
             ++ S     L +  G+    +L      Y      +D   K  + K  +   P  + P 
Sbjct: 508  LSVPSNLF--LKLEKGSVSPRDLITGSSNY------MDTVVKPRYDKSIEIHSP--SFPT 557

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRI 824
            T S +EI+ LI +PY  YA++IL L    H  ++P  +D G L H ++ E  K    + I
Sbjct: 558  TLSVTEIETLIRNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYDKQYI 617

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            N N  +  + +  I +       LP +    W+      S +F+  + + + + ++I+  
Sbjct: 618  NLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFE 677

Query: 885  IPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
               ++ +      I + G ADRI++ KS  + I DYKTG  P K+  +  + PQL +E+ 
Sbjct: 678  TKGELQLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESL 737

Query: 943  ALKAGSFSQIDCRKVAN----------------------LFYIRLKQKFKIDCITNDKKK 980
             L    F++ +   +                        + Y+++      +   +  + 
Sbjct: 738  MLLENGFTKCNSLSLLCHPQPLLCYSRESRNPVINNNITIAYVKITS---TEPYVHTTEI 794

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
              + E   +    L++++      +  F   L LS+     ++Y HL+R
Sbjct: 795  ALSIETLNRHKAGLVKLLEHYITNKF-FSYDLNLSK----YNDYLHLSR 838



 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 44/219 (20%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F +     +++    +              V I +P   +  EL+    +    K   LP
Sbjct: 7   FLKSFAEYIIDKLGKD------------TKVQIILPNNFSCLELKKILTDKYKIK---LP 51

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
           II     ++ +K  +D          +S I+ LL L+ +I  ++                
Sbjct: 52  IIIPFNSLISKKIDSDY---------ISKIEELLILSSIITEYKE--------------- 87

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
            LP++   ++  A+ L  + + +         +  ++      +W     FL+     W 
Sbjct: 88  -LPLNKNESLKAAELLRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCFLRWQ 143

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
           E +      +   Y++ L++ E   +  G    +I+AG 
Sbjct: 144 EEISFTQKQTKAVYKLKLLQEEIIKIKTG-HKQVILAGI 181


>gi|89894432|ref|YP_517919.1| hypothetical protein DSY1686 [Desulfitobacterium hafniense Y51]
 gi|122483027|sp|Q24WW7|ADDB_DESHY RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|89333880|dbj|BAE83475.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1220

 Score =  208 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 125/987 (12%), Positives = 255/987 (25%), Gaps = 124/987 (12%)

Query: 61  RSEFIEITGKKSTILPIIKSLGDVV----EEKFTADLLLSYNLNPPVSNIQRLLE----- 111
           R E  + + +    LP+I  + +      E     D      L   V + +RL       
Sbjct: 19  RQEIHKESQEHPEGLPLILLVPEQATHQMEMSLAHDPQSGGILRAQVLSFRRLGWRVFSE 78

Query: 112 ----LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
                  +I     ++      L   S L +    A    +A  LA  I   +      +
Sbjct: 79  VGGGGKAVIGEVGKRMLLRRLLLNHRSDLRVFARSATRPGMADLLAQAIAEFKIYRITPD 138

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
            L  +++       L     L    +   + L    A  P      L+  +         
Sbjct: 139 QLRGIEDAD--ELLLQKTHELAFLYEELNKSLGTA-ARDPDDELN-LVAGKISQAPFLQG 194

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
             I + G  G  P    ++  +        V   LD  +         +  T        
Sbjct: 195 AKIWVDGFKGFTPQELYVIQAMLGTAAEITVSLPLDPELL--------KAGTPRFKPGEE 246

Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
               P+ +   L+D     +  +  +       + ++ +                   ++
Sbjct: 247 LFYEPRQTYQGLVDLAREAKASISHVFLTETHRFEKAGLKHLERFYNAYPTQTFPGGDDS 306

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVK- 403
             P+       +AL  A N+R E   +A  LR    E  +     +++T D    + +  
Sbjct: 307 TAPD----PLGIALFPAANKRAEVEGVARELRRLAREEGRTWRDCSVVTRDLPGYQGIIE 362

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
                  I   +    P+       +L S +  + K   +  +   +K            
Sbjct: 363 QVFNAHEIPYFLDHKRPVIHHPLLELLLSAIETVQKDWAYEPLFRCLKTDFFPCSKDRID 422

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                  LE   L    +       +S         K  T   +   ++  +        
Sbjct: 423 ------RLENYCLAYGIHGSAWKGNRSWSYYPDPNHKEETAGLNETRQIIYDLFSPFDQA 476

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
           +    +   P VT      +    L      +      +            L  +     
Sbjct: 477 IRPHPEAGGPSVTVAQITEAIYELLIRLKVPEHLQEWAEAAHSRGDLAEAQLQNQ-IWDA 535

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
           +  +  +++        +  ++  I+T  ++   +         + +     SR      
Sbjct: 536 VIQVLDELVAGLGEEVMDLSDFAMILTSGLENLQLGLIPPGYDQVLVGSLDRSRNPETAV 595

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-------KYIGQAAHDFEMANGTRH 696
           L L G N+G+ P   +       + +  L  K          +   +    +      R 
Sbjct: 596 LFLLGANDGILPGKPSDEGVFDELERLRLESKGIMLAPKGKVQVYEEQYFIYTALTRARE 655

Query: 697 -LIYTRS-LRENNIPTIASRWLQRLL-------------VLGGTDFFDNLKKRGQCYLDW 741
            L  +     E       S  + RL                       +       Y   
Sbjct: 656 QLYISYPLTDEEGRGLTVSPVIHRLKMIFPGLPEKYLSLDEEEPGALPHPYALLPAYALH 715

Query: 742 TRKLDYTTKQPHYKRP---------KPFPPLEAQPRTY---------------------- 770
            +KL   +      +            FP ++   +                        
Sbjct: 716 LQKLRQGSSLSPLWQAIRLWFLSQTAAFPQVQLLEKGLRDQNEEGKLPQPLARQLYGKRL 775

Query: 771 --SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
             S S ++     P+A +A+  LKL             D G  FH ++ +       +  
Sbjct: 776 VTSVSRLELFARCPFAHFAQYGLKLKERS--NYRLSPPDMGQFFHAVLHDYAIALRERGL 833

Query: 829 P------EINHLMKQIIDS----HFEKENLPPHIDIIWR-HLFHKISHSFLE--HEEKIQ 875
                  E +  +            + + L  +    +  H   +  H  +    E   Q
Sbjct: 834 DWGELSKEQSWQLVNETAEPIALQLQNKILLSNARYRYLTHKLKRTVHHAVRVLGEHARQ 893

Query: 876 SSIEKIFVNIPA---------KMAI-ESIGIHLTGFADRIDLLKSGF---VDITDYKTGD 922
                + + +           ++ +     + L G  DRID    G    + I DYK+ +
Sbjct: 894 GVFLPMELEVKFGPQEALPPLEVPLSGGNSLLLRGQIDRIDGAVLGHEIYLRIFDYKSRE 953

Query: 923 NP-KKETAQKLIDPQLSLEAAALKAGS 948
                      +D QL     A   G+
Sbjct: 954 AHVSLNQIYHGLDLQLLAYLDAALQGA 980


>gi|313894261|ref|ZP_07827826.1| putative ATP-dependent nuclease subunit B [Veillonella sp. oral taxon
            158 str. F0412]
 gi|313441085|gb|EFR59512.1| putative ATP-dependent nuclease subunit B [Veillonella sp. oral taxon
            158 str. F0412]
          Length = 1176

 Score =  208 bits (528), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 115/978 (11%), Positives = 248/978 (25%), Gaps = 134/978 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
            L L          +  L  +            DL                  L I    +
Sbjct: 108  LGLLEQATKRPEFSSVLQQLFSEFRAFRVGPNDLERGAESVKNKVLQKKLQELAICMAAY 167

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             E +              ++ A  +  +      + I G     P    L+ T+ +    
Sbjct: 168  EEEISRHGERDIDPIM-EIVEALPQSPLME-NSHVFIDGFHWFTPTHYELIYTLFDLAKE 225

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            A++   +D  +     N                  H      ++ D L  +         
Sbjct: 226  AVIT--IDLPMAPKALNLARR------------GEHLFSRPLEIYDTLVARYGSNINW-- 269

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                       +                             + + LI   N   EA ++A
Sbjct: 270  -----------VGFDGKRGPQIVQELEANYFTSPSKQNSTDTTIPLIRGYNREREADAVA 318

Query: 376  IALRMSLD----ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSIL 430
              +   ++       +   ++  +             R+GI   I    P+       +L
Sbjct: 319  RRILAYVESSPEARYRDVCIMLRESETYGDTLEKVFGRYGIPHFIDRQRPMKNHPLGELL 378

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            T++ + +       ++  L+K  L                LE               L+ 
Sbjct: 379  TAIFDIVRHNYSRDSMFLLLKTDLMPLSREAVDELENYV-LEFGIDHYKWERESWPYLRG 437

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                +      +       ++  +   E+     D          T         G L  
Sbjct: 438  FHEGQDEEGHGDAPRRARVNQARQTIMEILSPWFDFAAHSEGH--TGAEWGEQLYGLLET 495

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
                +      Q+      ++      E+    + S   +I            E + ++ 
Sbjct: 496  LQVPQRLYEWAQDAETVGDQESKAS-HEQMYNAVISFIDEISMVMKDEVLTLDEMMLLLE 554

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
              +              + I          +  + + GLN+GV+P++      +    + 
Sbjct: 555  EGLSDVNYSMIPPSLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSMGDEGLIKDKERQ 614

Query: 671  DL---NLKTAE----KYIGQAAHDFEMANGTRH-LIYTRSLR-ENNIPTIASRWLQRLLV 721
            +L    +  AE    K   +    +         L  + +   E+      S  ++RL  
Sbjct: 615  ELAEAGITLAEGALPKAFNENFLLYLAMTRASDSLTLSYASSGEDGTGLEPSLVVKRLES 674

Query: 722  LG------------GTDFFDNLKKRG--------QCYLD----------------WTRKL 745
            LG              D   +   R         + +                  W R+ 
Sbjct: 675  LGYVDKAVEIPLSIAPDTESDYVWRPLQSLSLLSERWGALFSGHEVNPLWWGLYNWARES 734

Query: 746  DYTTKQPHYKRPKPFPPLEAQ---------------PRTYSFSEIKQLINDPYAVYARRI 790
            D    +            +                   + S + +++    P+  YA+  
Sbjct: 735  DTYRPRLGEVSRGIRDNNDVPVITKDLVNGLFLSKGYMSGSVTRLERYQQCPFKFYAQYG 794

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELI-------KKRINKNTPEINHLMKQIIDSHF 843
            LKL+      +     + GT  H  +  L        K+  + N  +  +L + + +   
Sbjct: 795  LKLEPRR--VRSFGAPEIGTFLHANLERLGNYLLDNNKQWRDLNEEDQQNLCRTVAEEIL 852

Query: 844  EK----ENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAK-------MA 890
            ++    E               +  H  ++   E   +S  +  ++            + 
Sbjct: 853  QENQGGEETSDAYQKAIEQRVQRTLHVTVDRLVEWSKRSDFDTKYLEQDFGRQGGWDPIR 912

Query: 891  IESIG---IHLTGFADRIDL-LKSGFVD--ITDYKTGDNP-KKETAQKLIDPQLSLEAAA 943
            +       + L G  DRID   + G     + DYK+G      +     +  QL     A
Sbjct: 913  VPLGEDRYLRLIGQIDRIDEYTRDGQTYGMVIDYKSGGAHVTAQDVYYGLKLQLMTYLLA 972

Query: 944  LKAG-SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL------IE 996
            L++    +Q +    A + Y  +K            +   +      + +N       IE
Sbjct: 973  LESSYGKTQGESIVPAAVVYSYVKNPKIPADAPISYEDAVSLAKESDAWQNSGYFSDDIE 1032

Query: 997  IVTLLQNGEQPFISHLRL 1014
            ++T + N    + S    
Sbjct: 1033 LLTHIDNKFLSYGSKRGP 1050


>gi|325982039|ref|YP_004294441.1| putative DNA repair protein [Nitrosomonas sp. AL212]
 gi|325531558|gb|ADZ26279.1| putative DNA repair protein [Nitrosomonas sp. AL212]
          Length = 923

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 102/732 (13%), Positives = 235/732 (32%), Gaps = 92/732 (12%)

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLD------------------ENKKKSALIT 393
              +  + +   E  N +EE    AI  R  ++                     + + +  
Sbjct: 220  WPQSLATIQRFEYTNSQEEIYQAAIWARSKIETVSNSVNSVRVGIVVPALMKYRNTLIRI 279

Query: 394  ADRNLARRVKLELT---RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
                +   ++L L    +     ++S G+ L+      I    L  + +  +F  I+  +
Sbjct: 280  FKEVMHPDIRLALPGAKQNIAPFNVSLGLALTNYPLIDIAFVGLALLDQKVEFNRISYWL 339

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
            + P       E       +A      +  + S   + L+ L +                 
Sbjct: 340  RSPFLAGSENEMSQRVLLDA------QIRRFSEPEISLERLFILVSRASGGKECPI---- 389

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                            +L C++ L  ++  +     + ++  + ++    LQ +     R
Sbjct: 390  ----------------LLHCLSVLRIFRQTRLPQSDSHTV--FARIIAEVLQILGFPGER 431

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
             L +  F+   K    + +         K +  E +  + ++      +P+      + I
Sbjct: 432  GLDSSEFQTLKKWQMLVANFAALDQVNAKTSYPEAVSRLRQMAANTLFQPETPNVP-VQI 490

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK---TAEKYIGQAAHD 687
            +   E+  + FD L + GL++  WP  +  NPFL   +Q    L    T E         
Sbjct: 491  IDVFEATGMEFDHLWVMGLSDEQWPLRSHPNPFLPLELQRKAKLPWGSTLESSAYCQRLT 550

Query: 688  FEMANGTRHLIYTRSL--RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
                +  + +I +      + +   + S  L R  +        ++++  +  +      
Sbjct: 551  RNWLSSAKDVILSYPRYSNDRDGHELKSSPLIR-SIPLREAVILDMEQHHERIIQSCEM- 608

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                     +       +  Q      S IK     P+  +A+  L +  +       + 
Sbjct: 609  ---EYIVDCESSPLGKEMAKQGIKGGTSVIKDYAACPFRAWAKHRLSITGLDAPHTGLNA 665

Query: 806  TDRGTLFHNIITELIKKRINKNTPE--INHLMKQIID----------SHFEKENLPPHID 853
             +RG L H ++ +L ++   K   +   +H ++++++            +    L     
Sbjct: 666  AERGLLVHQVLAQLWQQLKTKEALDDISDHNLERMLEGITNSVILQMEQYRPIALSGRFA 725

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913
             I +    ++   +L  E+K  SS   I         I+   + L    DRID L+ G  
Sbjct: 726  QIEQRRLFRLVLEWLVEEKKR-SSFRMIAAEEK--CLIQIGDLILNARLDRIDELEDGQW 782

Query: 914  DITDYKTGDNPKKETA-QKLIDPQLSLEAAAL---KAGSFSQIDCRKVANLFYIRLKQKF 969
             + DYKT     +    ++  +PQL L        +  + +     K   + ++ + ++ 
Sbjct: 783  IVIDYKTSRKSIQSMIGERPDEPQLPLYLVMAGMKQQAAGAAFAVIKRGEMGFMAVAREA 842

Query: 970  KIDCITNDKKKYS-------ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS--NI 1020
             +        +          ++L E   ++L  + T   NG+    + +          
Sbjct: 843  DLLPGIKAFSQLEKCTRFNTWEDLIEAWRQSLTNLATGFCNGD----ARVNPKNFPVTCK 898

Query: 1021 QSEYDHLARVAE 1032
              +     R+ E
Sbjct: 899  FCDMQLFCRIHE 910



 Score = 41.4 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 28/221 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEF--IEITGKKSTI-LPIIKSLGDVVEEKFTADLLLSYNLNP 101
           A   +  P +R    L  +F   +I  KK+      I     ++E  +   L        
Sbjct: 21  ADSLVVTPNRRLALALNEKFNQDQIKQKKTAWYSADILPFSSLIERIYLESL-----YVK 75

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
           PV  +  LL + +  ++W + +                   + A  LA            
Sbjct: 76  PVVTLPLLLTVYQEQVLWESIILSSEAGKALLRISQTARLVSEAWHLAHA---------- 125

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
               W  +H L +           +FL  A + +         +        +       
Sbjct: 126 ----WRLIHRLGDIVPNED---VREFLSWA-ETYQNITTLTRQTDQARICDLITEQYEFL 177

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
            +K     II  G     P     +  + ++    +V+   
Sbjct: 178 DIKKP-SRIICYGFDVITPQQILFLKKL-SNCGCEVVIANP 216


>gi|281423245|ref|ZP_06254158.1| conserved hypothetical protein [Prevotella oris F0302]
 gi|281402581|gb|EFB33412.1| conserved hypothetical protein [Prevotella oris F0302]
          Length = 923

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 77/521 (14%), Positives = 162/521 (31%), Gaps = 57/521 (10%)

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
               +      N   +               TL +    +I     ++A+   +  +I +L
Sbjct: 414  IVDILQEVGHNYTAEGEEDPLVQESIFRMYTLFNRLEALI-AAGDLEADFNIYNRLINQL 472

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            I   +V    E    L I+G LE+R L+FD +++   NEG  PK      F+   ++   
Sbjct: 473  ISSTSVPFHGEPVIGLQIMGVLETRNLDFDHILVLSCNEGNMPKGVNDTSFIPYAIRKAF 532

Query: 673  NLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFF-D 729
             L T +  +   A+ F       + +    +   +   T   SR++ +++V         
Sbjct: 533  GLTTIDNKVAIYAYYFHSLLQRAQDVTLAYNKATSKTATGEMSRFMLQMIVESQQKIQFR 592

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
            NL  +     +  + +    K            +       S + +   +      Y R 
Sbjct: 593  NLNAQQVPMQNIKKAIVKKPKV---------MEVINSIERISPTALTTYLRCQMRFYYRY 643

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK------RINKNTPEINH---LMKQIID 840
            +  +    + + + D    G +FH       +           +  +      L+ ++++
Sbjct: 644  VAGIKEPDNEEDEIDNRIFGNIFHRAAELFYQDKNHGGIIHESDIEDALKDKSLLTRLVE 703

Query: 841  SHFEKENLPP---------HIDIIWRHLFHKISHSFLEHEEKIQSS---IEKIFVNIPAK 888
              F ++              + +I R +        L+ + K+        +  V    +
Sbjct: 704  RAFREKLFEVNETREIKYNGLQLINRQVIIDYLKRLLQIDRKLTPFSILGLEESVEKAFE 763

Query: 889  MAIESIG--IHLTGFADRIDLLKSGF---VDITDYKTGDNPK-----------KETAQKL 932
            +        I+L G  DRID ++      + + DYKTG N              E     
Sbjct: 764  IDTPQGPKQIYLFGNIDRIDEIQDNHGAFIRVVDYKTGSNNSMNVKNIDDIFNPEKIDNH 823

Query: 933  ID--PQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITN--DKKKYSADELS 987
             D   Q  L +  L+           V+  L +I+       D       +         
Sbjct: 824  TDYYLQAILYSLILRNEHPINAANHPVSPALLFIQHATGKDYDPTLQLDKQPITDVANYQ 883

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             + +  L  ++  + N +  F  +     K      Y ++ 
Sbjct: 884  SEFMDQLKVLIEDIFNPDISF--NPTEKTKQCQYCPYRNIC 922



 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 60/468 (12%), Positives = 131/468 (27%), Gaps = 98/468 (20%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F + +   +L+                L+ +TI  P KRA   L  E       +    P
Sbjct: 4   FLQYVAEDILHKNGTN-----------LSRITIVFPNKRASLFLNEELAR-MANRPIWSP 51

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL-------ELARLILIWRNKLPDIIKD 129
              ++ ++  E     +     L   + ++ ++        E       W   L     D
Sbjct: 52  TYITISELFREHSDKTVGDQIKL---ICDLHKIFNACTGSCETLDHFYGWGQVLLTDFDD 108

Query: 130 LYPESP--------LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
           +             L       +A +L +   +++          +D+ +   E++   W
Sbjct: 109 IDKNMGDAHQIFTNLKNIHELDDASYLTEEQKELLKKF--FGNFSDDIASKLKERFINLW 166

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                  +     + E L +   +        ++    +  +       I  G       
Sbjct: 167 SN----FEEIYTRFKECLAQQGLAYEGALYREVVE---KTEIDFQNDNYIFVGFNMMQIV 219

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
             +L   +      A      D +              N         T+ +  L    +
Sbjct: 220 EQKLCERLQKLGK-AHFYWDFDDYY-----------MKNQYGIKHEAGTYIRQYLKYFPN 267

Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
            LD+  + +                                           +   ++  
Sbjct: 268 ELDVTNKQIYAN---------------------------------------FEQPKNITY 288

Query: 362 IEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
           + A  E  +A  I+  L+ +   ++ +++A++ AD NL   V   L     +++I+ G P
Sbjct: 289 LSATTENIQARYISTWLKQNGRIDDGRRTAIVLADENLLPTVIHCLPPELKHVNITTGYP 348

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMA-------IATLVKHPLAKFGFPE 461
           L     +S +  L+N                    L++HP  K+   E
Sbjct: 349 LQHAPIASFVRLLINLHTMGYSANRHSFSKKWRTMLMRHPYMKYIENE 396


>gi|269798727|ref|YP_003312627.1| ATP-dependent nuclease subunit B-like protein [Veillonella parvula
            DSM 2008]
 gi|269095356|gb|ACZ25347.1| ATP-dependent nuclease subunit B-like protein [Veillonella parvula
            DSM 2008]
          Length = 1185

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 116/978 (11%), Positives = 249/978 (25%), Gaps = 134/978 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
            L L       +  +  L  +           +DL                  L I    +
Sbjct: 108  LGLLEQATKRLEFSSVLQQLFSEFRAFRVGPDDLERGAEFVKNNVLQKKLRELAICMSAY 167

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             E L              ++ A  +  +      + I G     P    L+ T+ +    
Sbjct: 168  EEELSRHGERDIDPIM-EIVEALPQSPLME-NSHVFIDGFHWFTPTHYELIYTLFDLSKE 225

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            A++   +D  +     N                 + P      L+        +      
Sbjct: 226  AVIT--IDLPMAPKALNLARR--------GEHLFSRPLEIYDTLVARYG-SSINWVGFDG 274

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                   R +  +    P                         + LI   N   EA ++A
Sbjct: 275  KRGPQIVRELESNYFISPSKK----------------NSTDETIPLIRGYNREREADAVA 318

Query: 376  IALRMSLD----ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSIL 430
              +   ++       +   ++  +            TR+GI   I    P+       +L
Sbjct: 319  RGILAYVESSEEARYRDVCIMLRESETYGDTLEKVFTRYGIPHFIDRQRPMKNHPLGELL 378

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            T+L + +       ++  L+K  L                LE               L+ 
Sbjct: 379  TALFDIVRHNYSRDSMFLLLKTDLMPLTREAVDELENYV-LEFGIDHYKWERESWPYLRG 437

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                +      +       ++  +   ++     D      +   T         G L  
Sbjct: 438  FYEGQDEESHLDAPRRARVNKARQTIMDVLSPWFD--FAAYSDGHTGAEWGAQLYGLLET 495

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
                +     +++      ++      E+    + S   +I            E + ++ 
Sbjct: 496  LQVPERLYEWVKDAETVGDQESKAS-HEQMYNAVLSFIDEISMVMKDEILTLDEMMLLLE 554

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
              +              + I          +  + + GLN+GV+P++      +    + 
Sbjct: 555  EGLSDVNYSMIPPSLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSMGDEGLIKDKERQ 614

Query: 671  DL---NLKTAE----KYIGQAAHDFEMANGTRH-LIYTRSLR-ENNIPTIASRWLQRLLV 721
            +L    +  AE    K   +    +         L  + +   E+      S  ++RL  
Sbjct: 615  ELANAGITLAEGALPKAFNENFLLYLAMTRASDSLTLSYAGSGEDGTGLEPSLVVKRLES 674

Query: 722  LG------------GTDFFDNLKKRGQ--------------------------------- 736
            LG              D   +   R                                   
Sbjct: 675  LGYVDQTVEIPLSIAPDTEADYVWRPLQSLSLLSERWGALFSGYEVNPLWWGLYNWARES 734

Query: 737  -----CYLDWTRKLDYTTKQPHYKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRI 790
                    + +R +      P   +             + S + +++    P+  YA+  
Sbjct: 735  ETYRSRLAEVSRGIRDNNDVPVITQDLVNGLFLSKGYMSGSVTRLERYQQCPFKFYAQYG 794

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELI-------KKRINKNTPEINHLMKQIIDSHF 843
            LKL+      +     + GT  H  +  L        K+  + +  E  +L + + D   
Sbjct: 795  LKLEPR--PVRSFGAPEIGTFLHANLERLGNYLLENNKQWRDLDEEEQANLCRTVADEIL 852

Query: 844  EK----ENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAK-------MA 890
            ++    E               +  H  ++   E   +S  +  ++            + 
Sbjct: 853  QENQLGEETSDAYQKAIEQRVQRTLHVTVDRLVEWSKRSDFDTKYLEQDFGRQGGWDPIR 912

Query: 891  IESIG---IHLTGFADRIDLLKSGFV---DITDYKTGDNP-KKETAQKLIDPQLSLEAAA 943
            +       + L G  DRID    G      + DYK+G      +     +  QL      
Sbjct: 913  VPLGEDRYLRLIGQIDRIDEYTRGGQTYGMVIDYKSGGAHVTAQDVYYGLKLQLMTYLLV 972

Query: 944  LK-AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL------IE 996
            L+ A   +       A++ Y  +K            +   +      + +N       IE
Sbjct: 973  LESAYGKTHGGSMSPASVVYSYVKNPKIPADAPISYEDAVSLANESDAWQNSGYFSDDIE 1032

Query: 997  IVTLLQNGEQPFISHLRL 1014
            ++T + N    + S    
Sbjct: 1033 LLTHIDNKFLSYGSKRGP 1050


>gi|321314787|ref|YP_004207074.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus subtilis
            BSn5]
 gi|320021061|gb|ADV96047.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus subtilis
            BSn5]
          Length = 1166

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 123/1040 (11%), Positives = 274/1040 (26%), Gaps = 149/1040 (14%)

Query: 58   QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
              L   E  +       I   + S   +          +S    P +++    + L +LI
Sbjct: 44   TFLMEYELAKTPDMGGMIRAQVFSFSRLAWRILQHTGGMSR---PFLTSTGVQMLLRKLI 100

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE- 175
               + +               +    ++       +  ++   +    + ED+  +    
Sbjct: 101  EEHKQE-------------FKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMAESG 147

Query: 176  ---KYGMWWLLA--ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
               +Y    +L+     L I  +   + L +          + L+              I
Sbjct: 148  TASEYRGERVLSEKLHDLSILYQQMEKSLADQYLH--SEDYLTLLAEHIPLAEDIKGAHI 205

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
             + G     P   R++  +  H          D        + +        +       
Sbjct: 206  YVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTY------ 259

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
               Y L +    L++     +  G             ++                     
Sbjct: 260  ---YRLHQKAKELNLDITYKELSG-------------TERHTKTPELAHLEAQYEARPAV 303

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LEL 406
               +    + +++A N R E   IA  +   + E     K  A++       + +     
Sbjct: 304  PYAEKQEALTVMQAANRRAELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVF 363

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLS 465
              + I   I     +        + S L+ +     + A+   VK  L      P+  + 
Sbjct: 364  ADYEIPYFIDGKASMLNHPLIEFIRSSLDVLKGNWRYEAVFRCVKTELLFPLNEPKAKVR 423

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
               + LE   +                  R  +  ++      +  +     +    +V 
Sbjct: 424  EQVDQLENYCIAYGIKGDRWTKGDRFQYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVP 483

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKT 583
             + Q    +   KT +          + T + +     +    D+ R +     ++    
Sbjct: 484  PLFQLQKRMKKAKTVQEKAEALYRYLEETDVPLKLDQERQRAEDDGRIIEAQQHQQAWDA 543

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            +  L  + +E     + +   +  +I    +  T          +F+     SR+     
Sbjct: 544  VIQLLEEFVEMMGDDEISLDLFQQMIEAGAESLTFSLIPPALDQVFVGNMDLSRMYGTSC 603

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR-- 695
              + G N+GV P    +N  LS   +       + L +  +      H    MA  +   
Sbjct: 604  TFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSD 663

Query: 696  HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLD-------------- 740
             L  +  + +    T+  S  ++RL  L        L    +   D              
Sbjct: 664  RLYVSYPIADAEGKTLLPSMIVKRLEELFPYHKERLLTNEPEQVSDEEQLMYVVNQSVAQ 723

Query: 741  ---------WTRKLDYTTKQ----------------------------PHYKRPKPFPPL 763
                     WTR+ D +                                          L
Sbjct: 724  SFTASQLRLWTREYDISDVWWSTYNVLMSEPDRLQSKKLFSSLFFRNEVKQLERSVSRQL 783

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
              +    S S ++     P++ +A   L L     F    +  D G LFH+ +  +  + 
Sbjct: 784  YGERIQGSVSRMETFNACPFSHFASHGLHLKERQFF--KLEAPDIGQLFHSSLKLISDRL 841

Query: 824  INKNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEH 870
              +     +             ++++     ++  L  +     +    KI      +  
Sbjct: 842  REQKLDWRDLTKEQCELFSYDAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILS 901

Query: 871  EEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITD 917
            E    S    I + +    K  +  +   L         G  DR+D  +S     + I D
Sbjct: 902  EHAKASGFVPIGLELGFGGKGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVD 961

Query: 918  YKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
            YK+             +  Q+      ++   +         A + Y  +      D + 
Sbjct: 962  YKSSDKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMRATPAGVLYFHI-----HDPMI 1016

Query: 976  NDKKKYSADELSEKSLKNLI 995
                    DE+ ++  K   
Sbjct: 1017 QSNLPLGLDEIEQEIFKKFK 1036


>gi|219668858|ref|YP_002459293.1| ATP-dependent nuclease subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|251764587|sp|B8FXD8|ADDB_DESHD RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|219539118|gb|ACL20857.1| ATP-dependent nuclease subunit B [Desulfitobacterium hafniense
           DCB-2]
          Length = 1218

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 125/987 (12%), Positives = 255/987 (25%), Gaps = 124/987 (12%)

Query: 61  RSEFIEITGKKSTILPIIKSLGDVV----EEKFTADLLLSYNLNPPVSNIQRLLE----- 111
           R E  + + +    LP+I  + +      E     D      L   V + +RL       
Sbjct: 17  RQEIHKESQEHPEGLPLILLVPEQATHQMEMSLAHDPQSGGILRAQVLSFRRLGWRVFSE 76

Query: 112 ----LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
                  +I     ++      L   S L +    A    +A  LA  I   +      +
Sbjct: 77  VGGGGKAVIGEVGKRMLLRRLLLNHRSDLRVFARSATRPGMADLLAQAIAEFKIYRITPD 136

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
            L  +++       L     L    +   + L    A  P      L+  +         
Sbjct: 137 QLRGIEDAD--ELLLQKTHELAFLYEELNKSLGTA-ARDPDDELN-LVAGKISQAPFLQG 192

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
             I + G  G  P    ++  +        V   LD  +         +  T        
Sbjct: 193 AKIWVDGFKGFTPQELYVIQAMLGTAAEITVSLPLDPELL--------KAGTPRFKPGEE 244

Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
               P+ +   L+D     +  +  +       + ++ +                   ++
Sbjct: 245 LFYEPRQTYQGLVDLAREAKASISHVFLTETHRFEKAGLKHLERFYNAYPTQTFPGGDDS 304

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVK- 403
             P+       +AL  A N+R E   +A  LR    E  +     +++T D    + +  
Sbjct: 305 TAPD----PLGIALFPAANKRAEVEGVARELRRLAREEGRTWRDCSVVTRDLPGYQGIIE 360

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
                  I   +    P+       +L S +  + K   +  +   +K            
Sbjct: 361 QVFNAHEIPYFLDHKRPVIHHPLLELLLSAIETVQKDWAYEPLFRCLKTDFFPCSKDRID 420

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                  LE   L    +       +S         K  T   +   ++  +        
Sbjct: 421 ------RLENYCLAYGIHGSAWKGNRSWSYYPDPNHKEETAGLNETRQIIYDLFSPFDQA 474

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
           +    +   P VT      +    L      +      +            L  +     
Sbjct: 475 IRPHPEAGGPSVTVAQITEAIYELLIRLKVPEHLQEWAEAAHSRGDLAEAQLQNQ-IWDA 533

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
           +  +  +++        +  ++  I+T  ++   +         + +     SR      
Sbjct: 534 VIQVLDELVAGLGEEVMDLSDFAMILTSGLENLQLGLIPPGYDQVLVGSLDRSRNPETAV 593

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-------KYIGQAAHDFEMANGTRH 696
           L L G N+G+ P   +       + +  L  K          +   +    +      R 
Sbjct: 594 LFLLGANDGILPGKPSDEGVFDELERLRLESKGIMLAPKGKVQVYEEQYFIYTALTRARE 653

Query: 697 -LIYTRS-LRENNIPTIASRWLQRLL-------------VLGGTDFFDNLKKRGQCYLDW 741
            L  +     E       S  + RL                       +       Y   
Sbjct: 654 QLYISYPLTDEEGRGLTVSPVIHRLKMIFPGLPEKYLSLDEEEPGALPHPYALLPAYALH 713

Query: 742 TRKLDYTTKQPHYKRP---------KPFPPLEAQPRTY---------------------- 770
            +KL   +      +            FP ++   +                        
Sbjct: 714 LQKLRQGSSLSPLWQAIRLWFLSQTAAFPQVQLLEKGLRDQNEEGKLPQPLARQLYGKRL 773

Query: 771 --SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
             S S ++     P+A +A+  LKL             D G  FH ++ +       +  
Sbjct: 774 VTSVSRLELFARCPFAHFAQYGLKLKERS--NYRLSPPDMGQFFHAVLHDYAIALRERGL 831

Query: 829 P------EINHLMKQIIDS----HFEKENLPPHIDIIWR-HLFHKISHSFLE--HEEKIQ 875
                  E +  +            + + L  +    +  H   +  H  +    E   Q
Sbjct: 832 DWGELSKEQSWQLVNETAEPIALQLQNKILLSNARYRYLTHKLKRTVHHAVRVLGEHARQ 891

Query: 876 SSIEKIFVNIPA---------KMAIESIG-IHLTGFADRIDLLKSGF---VDITDYKTGD 922
                + + +           ++ +     + L G  DRID    G    + I DYK+ +
Sbjct: 892 GVFLPMELEVKFGPQEALPPLEVPLSGGNSLLLRGQIDRIDGAVLGHEIYLRIFDYKSRE 951

Query: 923 NP-KKETAQKLIDPQLSLEAAALKAGS 948
                      +D QL     A   G+
Sbjct: 952 AHVSLNQIYHGLDLQLLAYLDAALQGA 978


>gi|167761629|ref|ZP_02433756.1| hypothetical protein CLOSCI_04041 [Clostridium scindens ATCC 35704]
 gi|167660772|gb|EDS04902.1| hypothetical protein CLOSCI_04041 [Clostridium scindens ATCC 35704]
          Length = 1141

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 252/950 (26%), Gaps = 126/950 (13%)

Query: 151  NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA---ADFLKIASKYWTERLVELNASSP 207
             +  +I      +   E+L      +              +++  + + E L +   +  
Sbjct: 121  EVKSVISEFAQYDITEEELER--VMETAGEESRLYYKLKDIQVLYRGFMEYLEKKYIT-- 176

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                + ++              +++ G TG  P   RL+  +  H    ++   +D    
Sbjct: 177  KEELLDVLSQMVCKSDMLKNSTVVLDGFTGFTPVQNRLLLELMIHCRKVVITVTMDDRED 236

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              ++                   H   +L +L     I  ++   L              
Sbjct: 237  PYVYQH--------PYQLFGLGKHMVTTLMRLARDHRIAVDEPVCLYGRPPYR------- 281

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK- 386
               F   D+      ++         K    + +    N +EEA+++A A+R  + +   
Sbjct: 282  ---FKDHDSLAFLERNLFRYHGKGFGKEPESIGIHVTRNPKEEAMAVAGAIRALVRKEGY 338

Query: 387  --KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
              ++  +I ++ ++           + I   +     +        + SLL+   +   +
Sbjct: 339  RYREIGVIVSNMDVYGDDLEQAFAMYEIPAFMDHKRSILLNSFVEYIRSLLDMAEQNFTY 398

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
             ++   ++  LA F F E                       I   K      +   K   
Sbjct: 399  ESVFRFLRTNLAGFNFDEVDRLENY-----------VIGLGIKGYKRWQEKWVRRLKGME 447

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                                VD +L  +        +         + +  ++ +  L+ 
Sbjct: 448  EEELEALNHCRIILVEK---VDGLLYVLKQRSKTVRDITMALYEFMVREDLQVKLAALEE 504

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                E +      + +  + +  LF K +E     K +  E+  ++   ++   V     
Sbjct: 505  RFQAEGKLALAKEYAQVYRIVIELFDKFVELLGDEKVSLNEYCKLLDAGLEEARVGVIPP 564

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL------KTA 677
                +       +RL +   L   G N+   P +  +   LS   +              
Sbjct: 565  SVDQVVAGDVQRTRLKDIKALFFVGANDTYLPGSLLRTGLLSERDREKFARERLSLSPGG 624

Query: 678  EKYIGQAAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            ++          M     +  L    S    +      S  +Q L  L       + + R
Sbjct: 625  KEQAYIQKFYLYMNLTKPSEQLNIYYSKVSADGKSIRPSYLIQELRRLFPLLSVQDEEGR 684

Query: 735  GQCYLDWTRKL---------------DYTTKQPHYKRPKPFPPLEAQPRTY--------- 770
                 + T K+                    +  Y   K  P  +++  +          
Sbjct: 685  ALALREITEKMGIGYLIRGFQGNGEGMDAAWKELYTWYKKSPKWQSKVESLIKAGYYRRP 744

Query: 771  -------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                               S + +++     +A +    L L      + D    D G +
Sbjct: 745  MDGLTEAVAKRLYGEEFEDSITRMERFQTCAFAHFLTYGLNLQERQ--EYDFQAVDMGNV 802

Query: 812  FHNIITELIKKRINKN-------TPEINHLMKQIIDSHFEKEN----LPPHIDIIWRHLF 860
             HN +    +K   +          +    + + ++                +       
Sbjct: 803  CHNALERFSRKVEKEGCGWVGLKEEKRASFIDESVEEAITDYGNSVLYSSARNEYMIVRM 862

Query: 861  HKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF---VDI 915
             ++     +   ++      +                    G  DRID  + G    V +
Sbjct: 863  KRMLERTVWALTKQLSAGDFQPSAYEFRFA----------NGKIDRIDTCEDGDKVYVKV 912

Query: 916  TDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRLKQKFKID 972
             DYKTG            +  QL +   A       +   ++V  A +FY R++      
Sbjct: 913  LDYKTGSKAFDVVALYHGLQLQLMVYMEAAVKAEQKKHKEQEVVPAGVFYYRIQDPLVDK 972

Query: 973  CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022
                  ++    EL    + NL + V           S     + +   S
Sbjct: 973  QEEAAVEEALLKELKPDGMINLKDEVLQHLEHRTEGESLAVPVKFNKNGS 1022


>gi|229003979|ref|ZP_04161784.1| ATP-dependent nuclease, subunit B [Bacillus mycoides Rock1-4]
 gi|228757255|gb|EEM06495.1| ATP-dependent nuclease, subunit B [Bacillus mycoides Rock1-4]
          Length = 1177

 Score =  207 bits (526), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 127/1016 (12%), Positives = 274/1016 (26%), Gaps = 155/1016 (15%)

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
            +   I   G  ++I   + S   +  +        S      +      + L +++   +
Sbjct: 54   QQALIGNEGVSASIRAQVFSFSRLAWKVLQEVGGASRLH---IDEAGVHMLLRKIVEARK 110

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKY 177
              L              +    A      ++L  +I   +       +++ +    +   
Sbjct: 111  EGL-------------YVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHS 157

Query: 178  GMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
                          L++  + +   L+         Y   L+    +         I I 
Sbjct: 158  SGDEQKLLANKMYDLQLLYEDFERALIGKYL-DSEDYLQLLVEKLPDSDY-VKGAEIYID 215

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
            G     P    ++  +        +   +D    +   + +                   
Sbjct: 216  GFHSFSPGELEIIRQLMICGARITITLTVDEKTLSQPTSELD------------------ 257

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                 L     +  E VK+L          ++ + +       +        E++     
Sbjct: 258  -----LFYQTVLTYEKVKQLAREEKIAVESTISMREQPRFLSPALAHLEAEFESRPSKKF 312

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRF 409
            +   D+ L  A N R E   +A  +R  +   +   +   ++  +  +    +K   T +
Sbjct: 313  QSEPDITLYTAANLRAEVEGVAREIRRLVAEEEYRYRDITVLLRNGESYYDVMKTLFTDY 372

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAK 468
             I   I    P+S       + S L  I     + AI   +K  L       K  +    
Sbjct: 373  DIPHFIDEKRPMSHHPLIECIRSALEVISGNWRYDAIFRCIKTELLYPLDVRKESMREEM 432

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH-- 526
            +  E   L            +     R  +      +     R  EE       +V    
Sbjct: 433  DEFENYCLAYGVQGKRWTADEPWTYRRYRSLDGVNGMQTDSEREMEEKINRLRDVVRTPI 492

Query: 527  --ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
              + + +    +      +    L   D  K            E   L     ++  + +
Sbjct: 493  ISLQKRLKRASSVVQMCEAVYLFLEELDVPKKLEDLRMR-AEAEGNFLFASDHDQVWEEV 551

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             +L    +E     K +   +ID++T  ++             + I     SRL +    
Sbjct: 552  MNLLDTFVEMLGEEKMSRSMFIDVMTTGLEALQFANIPPSLDQVLIANIDRSRLSDIRAA 611

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMANGTRH- 696
             + G NEG+ P   +    LS   +        +L   T +  + +    ++        
Sbjct: 612  FVIGANEGIIPAAPSDEGMLSDEEREFLVTAGVELAPTTRQTLLEEQFVIYQTVTRASEK 671

Query: 697  LIYTRSLREN-NIPTIASRW---------------------------------------- 715
            L  +  L +      ++S +                                        
Sbjct: 672  LYISCPLADEEGKTLLSSSFIKKVKRMFPCVKEVFVTNDVNDLSRQVQISYVATPEVTLS 731

Query: 716  --------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------P 761
                     +R    G  DF+ ++        +W +K         Y+            
Sbjct: 732  YVTQQLQNWKRYGFEGNLDFWWDVYNFYVTSPEWKQKSSRVLSSLFYRNRAQKLSSVVSR 791

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
             L       S S ++      YA +A+  L L     F    D  D G LFH  + ++  
Sbjct: 792  DLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKKIAD 849

Query: 822  KRI--NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---------HLFHKIS--HSFL 868
            K +  N+   +++    + + +   +E  P     I               +I    S +
Sbjct: 850  KLLRENRTWADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRNYYLKQKLQQIIFRTSLI 909

Query: 869  EHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-V 913
              E    S    + + +P  M    ++  +   L         G  DR+D    ++G  +
Sbjct: 910  LREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFL 969

Query: 914  DITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965
             I DYK+             +  Q+      + + +     +      A + Y  +
Sbjct: 970  RIIDYKSSTKALDLTEVYYGLALQMLTYLDVVISNANTWMKKDGTASPAGVLYFHI 1025


>gi|228996314|ref|ZP_04155958.1| ATP-dependent nuclease, subunit B [Bacillus mycoides Rock3-17]
 gi|228763418|gb|EEM12321.1| ATP-dependent nuclease, subunit B [Bacillus mycoides Rock3-17]
          Length = 1166

 Score =  207 bits (526), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 127/1016 (12%), Positives = 273/1016 (26%), Gaps = 155/1016 (15%)

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
            +   I   G  ++I   + S   +  +        S      +      + L +++   +
Sbjct: 43   QQALIGNEGVSASIRAQVFSFSRLAWKVLQEVGGASRLH---IDEAGVHMLLRKIVEARK 99

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKY 177
              L              +    A      ++L  +I   +       +++ +    +   
Sbjct: 100  EGL-------------YVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHS 146

Query: 178  GMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
                          L++    +   L+         Y   L+    +         I I 
Sbjct: 147  SGDEQKLLANKMYDLQLLYDDFERALIGKYL-DSEDYLQLLVEKLPDSDY-VKGAEIYID 204

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
            G     P    ++  +        +   +D    +   + +                   
Sbjct: 205  GFHSFSPGELEIIRQLMICGARITITLTVDEKTLSQPTSELD------------------ 246

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                 L     +  E VK+L          ++ + +       +        E++     
Sbjct: 247  -----LFYQTVLTYEKVKQLAREEKIAVESTISMREQPRFLSPALAHLEAEFESRPSKKF 301

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRF 409
            +   D+ L  A N R E   +A  +R  +   +   +   ++  +  +    +K   T +
Sbjct: 302  QSEPDITLYTAANLRAEVEGVAREIRRLVAEEEYRYRDITVLLRNGESYYDVMKTLFTDY 361

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAK 468
             I   I    P+S       + S L  I     + AI   +K  L       K  +    
Sbjct: 362  DIPHFIDEKRPMSHHPLIECIRSALEVISGNWRYDAIFRCIKTELLYPLDVRKESMREEM 421

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--- 525
            +  E   L            +     R  +      +     R  EE       +V    
Sbjct: 422  DEFENYCLAYGVQGKRWTAGEPWTYRRYRSLDGVNGMQTDSEREMEEKINRLRDVVRTPI 481

Query: 526  -HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
              + + +    +      +    L   D  K            E   L     ++  + +
Sbjct: 482  IRLQKRLKRASSVVQMCEAVYLFLEELDVPKKLEDLRMR-AEAEGNFLFASDHDQVWEEV 540

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             +L    +E     K +   +ID++T  ++             + I     SRL +    
Sbjct: 541  MNLLDTFVEMLGEEKMSRSMFIDVMTTGLEALQFANIPPSLDQVLIANIDRSRLSDIRAA 600

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMANGTRH- 696
             + G NEG+ P   +    LS   +        +L   T +  + +    ++        
Sbjct: 601  FVIGANEGIIPAAPSDEGMLSDEEREFLVTAGVELAPTTRQTLLEEQFVIYQTVTRASEK 660

Query: 697  LIYTRSLREN-NIPTIASRW---------------------------------------- 715
            L  +  L +      ++S +                                        
Sbjct: 661  LYISCPLADEEGKTLLSSSFIKKVKRMFPCVKEVFVTNDVNDLSRQVQISYVATPEVTLS 720

Query: 716  --------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------P 761
                     +R    G  DF+ ++        +W +K         Y+            
Sbjct: 721  YVTQQLQNWKRYGFEGNLDFWWDVYNFYVTSPEWKQKSSRVLSSLFYRNRAQKLSSVVSR 780

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
             L       S S ++      YA +A+  L L     F    D  D G LFH  + ++  
Sbjct: 781  DLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKKIAD 838

Query: 822  KRI--NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---------HLFHKIS--HSFL 868
            K +  N+   +++    + + +   +E  P     I               +I    S +
Sbjct: 839  KLLRENRTWADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRNYYLKQKLQQIIFRTSLI 898

Query: 869  EHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-V 913
              E    S    + + +P  M    ++  +   L         G  DR+D    ++G  +
Sbjct: 899  LREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFL 958

Query: 914  DITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965
             I DYK+             +  Q+      + + +     +      A + Y  +
Sbjct: 959  RIIDYKSSTKALDLTEVYYGLALQMLTYLDVVISNANTWMKKDGTASPAGVLYFHI 1014


>gi|325291020|ref|YP_004267201.1| DNA helicase/exodeoxyribonuclease V, subunit B [Syntrophobotulus
            glycolicus DSM 8271]
 gi|324966421|gb|ADY57200.1| DNA helicase/exodeoxyribonuclease V, subunit B [Syntrophobotulus
            glycolicus DSM 8271]
          Length = 1147

 Score =  207 bits (526), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 132/1024 (12%), Positives = 276/1024 (26%), Gaps = 143/1024 (13%)

Query: 64   FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123
             I + G        + S   +    F     ++Y   P +    + + L R++   ++ L
Sbjct: 50   LIAVLGTGGIFQTEVLSFRRLAFRVFNEAGGITY---PHIHQAGKCMILYRILHKMKDSL 106

Query: 124  PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWL 182
                          +  + A+       +A++I  ++        L  +    +   +  
Sbjct: 107  -------------KVFANSADRQGFVNTIAELITELKQYHISPHRLEEVSGEFEDDNFLK 153

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                 L      + E L E          + L  A+           I I G  G     
Sbjct: 154  DKLLELSSIYAVFEEALRER--YHDSDDDLTLAAAKIPETRTYDGAEIWIDGFDGFTVQE 211

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
              ++ ++        V    D          I         + T  + H      KL+  
Sbjct: 212  YSVIESLLGKAGRISVSLCADGP-------GIGPAGGLDIFAPTKEAYH------KLVKV 258

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                R ++++   +      R    S+              +             D+AL 
Sbjct: 259  AQASRTEMEKPLLLETAHLPRFKNSSEL-------AHLERYLNTYPYQTYDSKTKDIALF 311

Query: 363  EADNEREEAISIA-IALRMSLDEN--KKKSALITADRNLARRVKLE-LTRFGINIDISAG 418
             A N   E  + A   +R   D+N   +   ++  + +  +         +GI   +   
Sbjct: 312  SAANIFSEIEAAARDIIRQCRDQNMRFRDITVVAGNLDKYQSFIEIIFAEYGIPYFLDRK 371

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
            + ++      +L ++L+   +   + A+   +K  L+     +            +    
Sbjct: 372  VEITNHPLVRLLLAMLDIFGENWSYEAVFRYLKTGLSGIEQEKIDRLENYVLACGIRGSR 431

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                 +   +    L    +           +R+  E                       
Sbjct: 432  WTKQEEWT-MSPDFLPDEKSSGQYREQLEEINRIRLEVAGPLQEFRGKTKGRRQTAEICT 490

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
               +  C     +   +      Q+             + +    L  +F +I+E     
Sbjct: 491  AVYDFLCRIGVPAKLEQSIAEFRQS-----GEVNLASEYAQVWNILMEVFDQIVEIMGDE 545

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
            K +   + DI+   +    V         + +     S+      L + G+N+GV+P   
Sbjct: 546  KLSLKRFADILKTGLAQFKVGLIPASLDQVLVGSPERSKSHKIKALYVLGVNDGVFPSAI 605

Query: 659  AKNPFLSRVMQSDLNLKTAE-------KYIGQAAHDFEMANGT-RHLIYTRSLRENNIPT 710
             K   LS   ++ L     E       +   +    +++   +  +L  +  + +    T
Sbjct: 606  IKENILSDPDRAVLGKTGIELAKDTRTQAFDEQYLIYKVLTTSGNYLRLSWPIADQEGKT 665

Query: 711  -IASRWLQRLLVL--------------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
               S  + R+  L               G +  + +  +   +    + L          
Sbjct: 666  LRPSIIISRIRKLFPMVAETGNVLTSTAGAEELELITGQASAFSQMVQALRRKADGREIS 725

Query: 756  RPK----------------------------PFPPLEAQPRT--------YSFSEIKQLI 779
            R                                PP+               S S +++  
Sbjct: 726  RLWRDTCIWFAGQEEWRDRCRAVRAAFLYKNIAPPISGDKVAALYGQPAYASVSRLERYT 785

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-------NTPEIN 832
              P+A Y +  L               D GT  H +I    ++   +       +     
Sbjct: 786  ACPFAFYVQYGLGAKERK--IYRFSPPDVGTFMHGVIEAFSRQVAEQALSWRELDKEWCE 843

Query: 833  HLMKQIIDSHFEKE---NLPPHIDIIWRH-LFHKISHSFLEH--EEKIQSSIEKIFVNIP 886
              + QI+D    K     L              ++    +    E   +S  E +   + 
Sbjct: 844  IKVSQIVDEMLAKMQGTGLAASKRYTALTMRLKRVLVRAVRLIAEHIRRSGFEPLGYEMD 903

Query: 887  AK---------MAIESIG-IHLTGFADRID--LLKSGF-VDITDYKT-GDNPKKETAQKL 932
                       + +ES   IHL G  DR+D      G  + I DYK+     K       
Sbjct: 904  FSESGDFPPIVIELESGEKIHLVGRIDRVDALKTAEGTYLRIVDYKSNNKEFKLADVYYG 963

Query: 933  IDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
            +  QL     A+       I        L Y R+      D +    K+ S +E+ +  +
Sbjct: 964  MQIQLMTYLDAIWENKGLDIPRPLLPGGLLYFRID-----DPLIRGSKQTSKEEIEQAIM 1018

Query: 992  KNLI 995
            K L 
Sbjct: 1019 KQLK 1022


>gi|158312779|ref|YP_001505287.1| UvrD/REP helicase [Frankia sp. EAN1pec]
 gi|158108184|gb|ABW10381.1| UvrD/REP helicase [Frankia sp. EAN1pec]
          Length = 1135

 Score =  207 bits (526), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/1011 (12%), Positives = 265/1011 (26%), Gaps = 119/1011 (11%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE            AS+ +   ++RA + LR  F    G  +   P   +        
Sbjct: 30   TLVEAVARRIEAGADPASLLVLTFSRRAARHLRERFAVRLGAAAVG-PAAWTFHAWCLGL 88

Query: 89   FTADLLL-SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
              A            +S  ++   L  LI        +  ++L             N   
Sbjct: 89   LRAYGAATPLGGFRLLSGPEQDARLRDLI--------EGSRELGRPVWPDPLAGCLNTRG 140

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
             A+ +  ++            L  +        W   A+F                A   
Sbjct: 141  FAEEIRMLLTRAREIGVDPPALARIARRVGRSDWAAVAEFYSDYLDALGAEGALDYADLV 200

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                      +    ++     + +     + PA  RL++ VA      +V    D    
Sbjct: 201  HAAANLAAEPDVLAQLRQRYRAVFVDEYQDTDPAQERLLTAVAGGGGDLVVF--GDPDQS 258

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               +     +      +    +      +A L     +                  +   
Sbjct: 259  IYAFRGAEVRGLLDFPNRFPRADGSPAPVAALRRCRRMAPA------------PLAASRR 306

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK- 386
              + LP     +R+     + +         VA         EA +IA  LR    EN  
Sbjct: 307  VAASLPSAGLPVRHVRAHRDLVSAGAVGPGQVAARTYPTAGAEAAAIAELLRREHLENGV 366

Query: 387  --KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKL--- 440
                 A++         ++  LT  G+ + ++ G  P +    +++L + L         
Sbjct: 367  DWDDMAVLVRSTAPLGLLRRVLTAAGVPVSVAGGELPPAREPAAALLLTALRCADDPAVQ 426

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
                    L+  PL             +      A R    +            R +T +
Sbjct: 427  LTPETARALLTSPLGGADPAGLRALGRELRAHDAAARAAARAAARGTAARGTTARDSTAR 486

Query: 501  NN----------------------------------THVPHWQSRLSEEDKELAVLLVDH 526
            +                                            + +E       L   
Sbjct: 487  DAVGPIALPEPRSAPEADGSVLGLPASSAELLREAVADPERVLLAVPDELAAPVRRLGRL 546

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
            +      L      +++     + S+W                    +L   +    L  
Sbjct: 547  LRTVRAELRRGAAPEDALWTLWTASEWGPRLERASAVGGPAGRSADRDL---DAVVALFD 603

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
               ++ E        +    ++  + I  ET + +  + +T+ +L    S+ L ++ +++
Sbjct: 604  AVGRLGERRGPGFGVSSVVEELTRQQIAPETAQARAGRPATVRLLTAHRSKGLEWEVVVV 663

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSD------LNLKTAEKYIGQAAHDFEMAN--GTRHLI 698
             G+ +GVWP    ++  L                +T E+ +      F +A     R L+
Sbjct: 664  CGVQDGVWPDLRQRHTLLGAEQLDSPRNGGVRPPRTREELLADERRLFYVALTRARRRLV 723

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGG-------------------------TDFFDNLKK 733
             T     ++     SR+L  L V                             +    +++
Sbjct: 724  VTAVDGADDDGEQPSRFLAELGVQVESVRARPPRPLTLVGLVAALRRLTVDPEASAAMRE 783

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                 L         T +       P         T S   +           +      
Sbjct: 784  AAGVRLAALAAASDETGRALVPAAHPDRWWGLLDVTSSDVPVVAPDAPIRLSGSSLSGLS 843

Query: 794  D---------FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                           +        G + H +  E+   R       ++  +  ++  H E
Sbjct: 844  SCGLRWFLEHEANAAEPASPAQGFGKVVHALADEVTTGRTEARLEALDARL-DLVWRHLE 902

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK--MAIESIGIHLTGFA 902
             ++         R    +    FLE     +   E +   +     + +    + L GF 
Sbjct: 903  FDSRWRS--EQERAAAREALGRFLEWHAAQR-GREVVASEVRFSCDIEVAGRVVRLRGFI 959

Query: 903  DRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
            DR++L  +G V + D+KTG   P +         QL     A++ G+   +
Sbjct: 960  DRVELDDAGRVHVVDFKTGRTPPSRRDLATHA--QLGSYQLAVREGALDPV 1008


>gi|331082718|ref|ZP_08331841.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
            6_1_63FAA]
 gi|330400337|gb|EGG79979.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
            6_1_63FAA]
          Length = 1144

 Score =  207 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 123/925 (13%), Positives = 252/925 (27%), Gaps = 127/925 (13%)

Query: 158  IIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +   E   EDL  +                +K   + + + L E +  +        M 
Sbjct: 128  ELRQYEISAEDLEDILENLASSPELYYKLQDIKTLYQGFFDYL-EGSFITQEEVLD-AMG 185

Query: 217  AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
              A    K     +++ G TG  P   +L+ T+ +      V           I      
Sbjct: 186  RVAPLSKKLKDSVLVLDGYTGFTPIQIQLLETLLDICQEIYVTVT--------IAAGEDP 237

Query: 277  KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
                        S     SL ++     I  ++         E  G          P   
Sbjct: 238  YKMGSPHELFYLSKQTVASLLRIAKEKKISWKEYW-----IPEGKGTYQGRFADNPPMAF 292

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALIT 393
             +       + K P  Q     V + EA N   E    A  +R  +       +  A+IT
Sbjct: 293  LEKNVFRYRKKKYPKPQNA---VQIYEAQNPASEMEMTAGQIRRLVRTKGYRYRDFAVIT 349

Query: 394  ADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
             D  +          R+ I   I     +        L + ++ I +   + ++  +++ 
Sbjct: 350  GDMQVYAPAASRAFKRYEIPCFIDEKHSVFLNPFVEYLRAAVDMIVENFSYESVFRMLRC 409

Query: 453  PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
             L      E                       I        + + + +     P    ++
Sbjct: 410  GLNDISTEEADRLENYVIAM-----------GIRGFSRWQQEWVRSYR--GENPEECVQI 456

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
                  L         +  TP  + +T   +    ++ +   K      +N    E    
Sbjct: 457  DRIRASLVEKWQPFYKKMKTPDASVRTYTEALYEYITANKIQKKLKEFTKNF-EAEGNLS 515

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
                + +  + + +L  K++E     K    E+ +I+   +    V      S  + +  
Sbjct: 516  LVKEYSQIYEIVMNLLDKLVEILGDKKVRIREFKEILEAGLSEAKVGIIPPTSDQVLVGD 575

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-------- 684
               +RL +   +   G+NEG  PK       LS + + +L     E+ +  A        
Sbjct: 576  MERTRLKDIKIVFFVGVNEGKIPKEQQAGKLLSDLNREELKGSLKERGLSLAPTAKENLY 635

Query: 685  ---AHDFEMANG-TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDN-----LKKR 734
                + +      +  +  + S    N  P   S  + ++  L      +       + +
Sbjct: 636  TQKFYLYLNLTKPSERIYLSYSRLSSNGEPLSPSFLVSQIQKLFPDAIREWDVPLFAESK 695

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY------------------------ 770
                   + ++    +               +                            
Sbjct: 696  YGALDKLSEEIRKQDRTSPVFEELMSWFTSQKDYAELINGLIDAAYYVNPQESISKGVAE 755

Query: 771  ---------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                     S S ++Q      + +    L L      + + +  D GT  HN +    +
Sbjct: 756  ALYGTELSNSASRLEQFAKCACSHFLSYGLMLRER--VRYEFNMADMGTFLHNSLDLFAR 813

Query: 822  KRINK-----NTPEINHLMK------QIIDSHFEKENLPPHIDIIWRHLFHKISHS--FL 868
            K   +     +  +            ++++   E   L    +    +   ++     + 
Sbjct: 814  KVREQGKSWIDLEDAERDALAENCVTEVVEKSGETILLSSARNAYIINRVKRMVKRSVWA 873

Query: 869  EHEEKIQSSIEKIFVNIPA-------KMAIE---SIGIHLTGFADRIDLLKSGF----VD 914
               +  Q                    +  +      +HL G  DRID+ +       V 
Sbjct: 874  LQNQLKQGEFYPALTEWAFGEKDNIDSLNFDLATGQKLHLKGRIDRIDVCQDKENHLYVK 933

Query: 915  ITDYKTGDNP-KKETAQKLIDPQLSLE---AAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
            + DYK+G            +  QL+L    A  L+   F      + A +FY        
Sbjct: 934  VIDYKSGTTQLDLIKLYYGLQIQLALYLNAALELEKKRFPD-KIVQPAGVFYYN-----T 987

Query: 971  IDCITNDKKKYSADELSEKSLKNLI 995
             D I N +   + +   E+ LK L 
Sbjct: 988  KDPILNKEDVKNPENPQEEILKKLK 1012


>gi|304403944|ref|ZP_07385606.1| ATP-dependent nuclease subunit B [Paenibacillus curdlanolyticus YK9]
 gi|304346922|gb|EFM12754.1| ATP-dependent nuclease subunit B [Paenibacillus curdlanolyticus YK9]
          Length = 1207

 Score =  207 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 116/935 (12%), Positives = 256/935 (27%), Gaps = 118/935 (12%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-------EKYGMWWLLAADFL 188
            L L           + L +++   +        L  L                +     L
Sbjct: 108  LRLFQGAGGQPGFIERLGELLTEWKRYGVDNGRLADLVGTASASEGGAASPLLVRKLHDL 167

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++  +        L A       +  +              I I G  G  P     ++ 
Sbjct: 168  RLIYEAMELETAHLYAD--AEDYLTYLARGYALSPSLHGAEIWIDGFHGFTPKEYEALAA 225

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        V   LD            ++   +   + +  T+ Q  L +L +   +   
Sbjct: 226  IIGSAANVTVNLTLDRPYDG------GDRPHELELFHPSAQTYIQ--LRELAEAGGVDIA 277

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
             V  L      +   +     + +    +  R     +  + + Q+    ++L  A N R
Sbjct: 278  SVTSLDEALPRLPRFAHSPVLAHVERHYATRRPMADTKASMFDPQRPEGQISLHAAPNRR 337

Query: 369  EEAISIAIALRMSLDENK---KKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTT 424
             EA +    +     E     +  A++  +         EL   + I   +      S  
Sbjct: 338  AEAEAAVRDMVRRAREEGYRWRDMAIMVRNATDYTDYLTELMQDYQIPYFLDQKRTASHH 397

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK--NALELVALRGNKNS 482
                 + S L  +     + A+   +K  L   G  E      +  + LE  AL    + 
Sbjct: 398  PLVEFIRSSLETVLHGWKYDAVFRCMKTELLFPGENEASRLTRESFDLLENYALAAGIDG 457

Query: 483  YDIMDLKSLVLD-----RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            +  +++KS           A     T     + ++  E +E  V  +  +   +      
Sbjct: 458  WRWLEIKSWRPLVRESLEQAEAAEATRTELERFQVVLEAREAIVAPLRQLSDALQGARNV 517

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
            +T   +    L  +          +        +       +   ++ +L  +++E    
Sbjct: 518  RTMCEALYVLLDQAGAADRLERWSRADAEAGRVRQARS-HRQLWDSVMALLDQLVEMTGD 576

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
               +   +  +IT  +D   +         + I     +R        + G N+GV P  
Sbjct: 577  EPLSPELFAGMITTGLDSLKLASVPPSLDQVLIGSVDRTRSGEVKVCYVLGANDGVLPMR 636

Query: 658  TAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIP 709
              ++  L+   +  L         +  + +         A     RHL  + ++ +    
Sbjct: 637  MQEDGVLTEQERDMLADAGMQLAPSVRRRLLDERFMIYNALSAPSRHLWVSYAMADEEGK 696

Query: 710  T-IASRWLQRLLVLGG---------------------------TDFFDNLKKRGQCY--- 738
            +   S  ++ L  +                                  +L  + + +   
Sbjct: 697  SLHPSELIRHLRAMFPSLAERGIYSDPLAAMSTEEQLSFATRPHAALPHLIAKLREWRQG 756

Query: 739  -----------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------TYSFSEI 775
                              +W   L   T    Y+  +P  P E            S S +
Sbjct: 757  AAIQPLWWDVFSWYAIRPEWQEALRRRTASLDYRNEEPPLPPETATMLYGERLRASVSRM 816

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            ++ ++ P+  +A   L+L          +  D G LFH  ++ +  K   +     +   
Sbjct: 817  ERFVSCPFQHFASYGLRLQER--AVYRIEAPDIGQLFHAALSRVADKFGRRWGAVTDEQA 874

Query: 836  KQIIDSHFEKENLP--------PHIDIIWRHLFHKIS--HSFLEHEEKIQSSIEKIFVNI 885
                    ++                         I    + +  +   ++S   + + I
Sbjct: 875  AAAASEVVDELAPRLQSEILLSSGRHRFMLGRLKAIISQAAIMLGDHARRASFHPVGLEI 934

Query: 886  PA--KMAIE--------SIGIHLTGFADRID--LLKSG-FVDITDYKTGDNP-KKETAQK 931
                +  +            + L G  DR+D    + G  + + DYK+     + E    
Sbjct: 935  DFGPEGTLPSLVVPLPDGGEVELVGRIDRVDAAETEDGLLLRVLDYKSSATSLRLEEVAF 994

Query: 932  LIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRL 965
             +  Q+       L  GS       K A + Y  +
Sbjct: 995  GLSLQMLAYLDVILTHGSNWLGKEVKPAGVLYFHV 1029


>gi|229586675|ref|YP_002845176.1| RecB family exonuclease [Rickettsia africae ESF-5]
 gi|228021725|gb|ACP53433.1| RecB family exonuclease [Rickettsia africae ESF-5]
          Length = 838

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 132/709 (18%), Positives = 261/709 (36%), Gaps = 103/709 (14%)

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
            P  ++    ++  E ++  EE   I+           ++ A++T +  L R     L ++
Sbjct: 204  PASKQISDGISYYEPNDIYEETKQISYI---CSRNKDRRIAIVTNNNKLKRVYCNFLDKY 260

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
               +    G  L  +    +LTS++N +    D   +  L+K+PL               
Sbjct: 261  EDLL----GNDLRLSNIGELLTSIINILCNNFDLKLLFLLLKNPLINCP--------TVQ 308

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
             LEL+    N+       L  L                     +E+ +E    L+D +  
Sbjct: 309  QLELMLSNKNRFISSPKYLLQL------------------QFDNEDIREYCRNLIDIL-- 348

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                                 +D        L        + LP +W +E G  L    +
Sbjct: 349  --------------------FTDTPHNIQAILILTKEITEKLLPTIWEKEGGAELLEFLT 388

Query: 590  KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
             +          +  ++  I + L+       K   ++++ I    +  L  FD +IL  
Sbjct: 389  NLTAYSKYINSTDKKDFPKIFSFLLSNIKYY-KNTDAASIIIGRPEDLALCEFDLIILPH 447

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
             N   W  +T  +P+LS+     LN+   E      +  F +    + ++   + + +  
Sbjct: 448  FNNENWTLSTKAHPWLSKKALQILNIDYDEIAPTLYSDYFNLFLQNKQIVILNAKKYDGK 507

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
             ++ S     L +  G+    +L      Y      +D   K  + K  +   P  + P 
Sbjct: 508  LSVPSNLF--LKLEKGSVSPRDLITGSSNY------MDTVVKPRYDKSIEIHSP--SFPT 557

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRI 824
            T S +EI+ LI +PY  YA++IL L    H  ++P  +D G L H ++ E  K    + I
Sbjct: 558  TLSVTEIETLIRNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYDKQYI 617

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            N N  +  + +  I +       LP +    W+      S +F+  + + + + ++I+  
Sbjct: 618  NLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFE 677

Query: 885  IPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
               ++ +      I + G ADRI++ KS  + I DYKTG  P K+  +  + PQL +E+ 
Sbjct: 678  TKGELQLNIIGQDIKIIGIADRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESL 737

Query: 943  ALKAGSFSQIDCRKVAN----------------------LFYIRLKQKFKIDCITNDKKK 980
             L    F++ +   +                        + Y+++      +   +  + 
Sbjct: 738  MLLENGFTKCNSLSLLCHPQPLLCYSRESKNPVINNNITIAYVKITS---TEPYVHTTEI 794

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
              + E   +    L++++      +  F   L LS+     ++Y HL+R
Sbjct: 795  ALSIETLNRHKAGLVKLLEHYITNKF-FSYDLNLSK----YNDYLHLSR 838



 Score = 61.9 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 75/219 (34%), Gaps = 44/219 (20%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F +     +++    +              V I +P   +  EL+    +    K   LP
Sbjct: 7   FLKSFAEYIIDKLGKD------------TKVQIILPNNFSCLELKKILTDKYKIK---LP 51

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
           II     ++ +K  +D          +S I+ LL L+ +I  ++                
Sbjct: 52  IIIPFNSLISKKIDSDY---------ISKIEELLILSSIITEYKE--------------- 87

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
            LP++   ++  A+ L  + + +       + +          +W     FL+     W 
Sbjct: 88  -LPLNKNESLKAAELLRKLFNDLIINNINIKLIE---VYNNSNYWQKIYKFLEYCFLRWQ 143

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
           E +      +   Y++ L++ E   +  G    +I+AG 
Sbjct: 144 EEISFTQKQTKAVYKLKLLQEEIIKIKTG-HKQVILAGI 181


>gi|251764597|sp|B7GM52|ADDB_ANOFW RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
          Length = 1154

 Score =  206 bits (524), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 129/1005 (12%), Positives = 272/1005 (27%), Gaps = 146/1005 (14%)

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW-------LLAAD 186
              L+L    A+     + L  ++   +        L     E+                 
Sbjct: 104  EQLTLFRKAADKRGFIEQLEQMLTEYKRYCVTPATLKQ-TEEQLRRHATANETVLADKLK 162

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
               +  + + +++            + L+  +  H     +  I + G     P    ++
Sbjct: 163  DTAMIFEQFEQQMAHHYVD--SEDYLRLLAEKIRHSSYMKRARIYMDGFYEFTPQEYMVI 220

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              +  H     V   LD            +   ++     T+ T+ Q     L + + I+
Sbjct: 221  EQLFIHCPHVTVALTLDAPY--------EQLPDDLHVFRNTWRTYAQLRDIALQNGVPIE 272

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            + +  R          R +       P                   +K    + + EA  
Sbjct: 273  KVEQLRHNVRHKHEELRHLEAHYDDRPVC---------------KWEKQTEAIIIGEATT 317

Query: 367  EREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLS 422
             R E   IA  +   + +     +  AL+  +    R V       + I   I    P+ 
Sbjct: 318  RRAEIEGIAREIIRLVRDEGYRYRDIALLIRNVGDYRNVLKTVFADYRIPYFIDEKEPML 377

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK-NALELVALRGNKN 481
                   L + + A+     + A+   VK           +  R   + LE   L     
Sbjct: 378  DHPFIEWLRASMEAVRTNFRYEAVFRAVKTDFFFHLDQPVHDMRMAMDQLENYVLAFGIQ 437

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE--EDKELAVLLVDHILQCITPLVTYKT 539
                 +  +    +     +       +    +  E ++L +  +  + + +    T + 
Sbjct: 438  GDKWTEHWTYRKYKGLEGVHAPQTDEEKRYEQQLNEWRKLVISPLLVLQKRLKQAKTGRE 497

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
               +           +                +     E+  +    L  + +E      
Sbjct: 498  QCEALYAYAEHLQIPQKLERLRDEAEERGDLSVARH-HEQVWQAFIDLLDQYVEILGDET 556

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   ++ II    +          +  + I     SRL N     L G+NEGV P    
Sbjct: 557  LSLETFLTIIETGFESLQFSLVPPATDQVLIAHFDRSRLSNIRCTFLVGVNEGVIPMRKN 616

Query: 660  KNPFLSRVMQSDL-------NLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPT- 710
             +  LS   +  L          + E+ + +    +     +   L  T +L      T 
Sbjct: 617  DDGMLSETDRELLYHYSLHVAPASRERMLDEPFLLYLALVSSSERLYVTYALSNEQEKTL 676

Query: 711  IASRWLQRL---------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY--KRPKP 759
            + S +++RL         +  G   F   L+++     +    L    +Q     ++   
Sbjct: 677  LPSMFIKRLTDMFPNVTKMQWGTDPFLLPLQQQLAYVTNDVATLGPLVQQLEAWKRQYAI 736

Query: 760  FPPLEAQPR-----------------------------------------TYSFSEIKQL 778
             P                                                  S S ++  
Sbjct: 737  EPMWWDVYNAYVQHEQWKERIAVVVRALFYENRAKRLNKQLAKELYGKKVKASISRMETF 796

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN------ 832
               P+A +A   LKL     F+      D G LFH  +  +  +   +  P         
Sbjct: 797  NRCPFAHFAAHGLKLKERTVFQ--LKAPDMGQLFHQALKVIADRLRQEQLPWSQLSKQQC 854

Query: 833  -----HLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS--HSFLEHEEKIQSSIEKIFVNI 885
                   ++QI     ++  L  H     +     I    + +  E   +S    I V +
Sbjct: 855  EQLSYEAVEQIAPYIQQEVLLSTHRYRYMKKKLQTIMTKATTVLSEHAKRSGFVPIGVEL 914

Query: 886  PAKM--AIESIGIHLT--------GFADRIDL--LKSGF-VDITDYKT-GDNPKKETAQK 931
                   +  +   L+        G  DR+D    + G  + + DYK+            
Sbjct: 915  GFGDGEPLPPLTFTLSDGTVLQFVGRIDRVDQAMSEQGVLLRVIDYKSKQKTLDLTEVYY 974

Query: 932  LIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  Q+      +   +   +      A + Y  +      + +    +     EL +K 
Sbjct: 975  GLALQMLAYLDIVLEYAEKLVGTSAFPAGVLYFPI-----HNPMMKVNEWLDEHELEKKF 1029

Query: 991  LKNL---------IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026
            L+            + V L+    +P  S L +  + N    +  
Sbjct: 1030 LEQFKMGGYVLADEKTVRLMDEHVEPGTSSLIIPVRLNKNGTFAQ 1074


>gi|291538109|emb|CBL11220.1| ATP-dependent nuclease subunit B [Roseburia intestinalis XB6B4]
          Length = 1179

 Score =  206 bits (524), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 117/949 (12%), Positives = 247/949 (26%), Gaps = 126/949 (13%)

Query: 150  KNLADIIDIIETEEKKWEDLHALKNEKYGMW-WLLAADFLKIASKYWTERLVELNASSPV 208
              +  +I  +       + L     ++       L    +    + +TE L         
Sbjct: 120  GEVKSLISELMQYNVSPDALAEFLEKEPLGEGLRLKMQDVLTMYQGFTEYLK--GRYITA 177

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
               + L+   AE         I++   TG  P   RLM  +        V   +D     
Sbjct: 178  EEVLELLYDVAEESELLRNSVIVLDEFTGFTPIQNRLMEKLLVLAKKVSVSVTMDVREDF 237

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
                 + E       +          SL K+ +   +  E+   L             ++
Sbjct: 238  YQCRGVHELFAMSKKTV--------ASLLKVAELCKVPVEEPLVLPTGKQ-----RRYVN 284

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-- 386
             + L     ++        +    ++    + +    N REE    A  +     EN   
Sbjct: 285  AADLYFMEQNLFRPGAGSYRYKASEQSMQHIRITSLKNPREELKFAAREIVRLTRENGYR 344

Query: 387  -KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
             +  A++T D       V     ++ I   I     +        + ++L  I     + 
Sbjct: 345  YRDIAVVTGDVQQYGNYVPEIFEQYHIPYFIDQTKNILFHPFIECIRAILEMIEYDFSYE 404

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
            ++   ++  LA     E   S  +           +       L    +DR+        
Sbjct: 405  SVFRFLRCGLAARVVTEAKNSDKEPDPAATEDLTQQPETGSHGLTEQEIDRLENYVLARG 464

Query: 505  VPHWQSRLSE----------EDKELAVLLVDHILQCITPLVTYKTNKN-----STCGNLS 549
            +                   ED      + + + +   PL+     K+      T    S
Sbjct: 465  IRGASRWSRPWTFVMPDGTLEDMARLNEIREAVYENFKPLLEAFRGKDNTVSTQTYELYS 524

Query: 550  ISDWT--KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +      +  +    N       +     +++  K +  L  K+            E+ D
Sbjct: 525  LIRRLNMEQLLKERGNFFEAHGNQARAKEYDQIYKIVMDLLDKVTSLLGDETMTIREYSD 584

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            I+    +   V      + T+ +     +RL +   L   G+N+GV PK   +   +S+ 
Sbjct: 585  ILDAGFEAAKVGIIPPGNDTVTVGDIERTRLNHVKILFFVGVNDGVVPKAGNQGGIISQF 644

Query: 668  MQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYT-RSLRENNIPTIASRWLQR 718
             +  +          A + +        +     +  L  T   +  +      S  +  
Sbjct: 645  EREKMAEYHLELAPGAREKVFIQKFYLYLNMTKPSERLYVTFCRVNSDGKALRRSYLIGT 704

Query: 719  LLVLGGTDFF---------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
            LL L               +               L    +            L  +   
Sbjct: 705  LLKLFPQLAVEEPSEEETLEGALTAESALPFLMEGLTKPVEDEEAWTALLAWYLSDEGER 764

Query: 770  Y---------------------------------SFSEIKQLINDPYAVYARRILKLDFI 796
                                              S + ++Q     +A Y    L+L   
Sbjct: 765  EKVMQLFDAAFGAHKDDAISKAVTKALYGNTLENSVTRLEQFAACAFAHYLSYGLRLKER 824

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFE----K 845
                +     D G ++H+++    K     +             L+ Q ++         
Sbjct: 825  E--LQQFASVDMGNIYHDVLERFAKGIELSDYTWFDIPEKAQEALLSQSMEDAIAGSGIG 882

Query: 846  ENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIESIG- 895
            +      +          +    +    +  +         +          +  +    
Sbjct: 883  DVFEDARNSYLLKRMEATAKRTIWALMLQVRKGKFVPSGFEVSFSRAERLDAVQFQLGED 942

Query: 896  --IHLTGFADRID--LLKSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLE---AAALKA 946
              + L G  DR+D           I DYK+G            +  QL +    A  L  
Sbjct: 943  EKMRLRGRIDRVDTYETDDKVYVKIIDYKSGNTTFSLLNFYYGLQLQLVVYMNAALELTK 1002

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              +   D  + A +FY  +      D + +   + S +E+    L+ L 
Sbjct: 1003 KKYKGKD-TEPAGIFYYHIT-----DPMVDADGQESEEEIRRSILEQLK 1045


>gi|251764596|sp|A8FBR0|ADDB_BACP2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
          Length = 1169

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 114/1075 (10%), Positives = 282/1075 (26%), Gaps = 153/1075 (14%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSL 81
             A+L   + E  R DPL P     +   VP +  +  L   E  + +     I   + S 
Sbjct: 16   TAILEE-IKEQLRLDPLGPP----IIFLVPDQ--MTFLMEYELAKTSEAGGMIRAKVFSF 68

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
              +           +           R    +  I +   K+ +  KD +      +   
Sbjct: 69   TRLAWSILQQTGGAN-----------RQFVTSTGIQMLLRKVIEEQKDKFK-----VFKK 112

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNE----KYGMWWLLA--ADFLKIASKYW 195
             ++     + +   +   +      E++  +  E    +Y      A     L +  +  
Sbjct: 113  ASDKPGFVEQIEKTMAEFKRYCMLPEEIEKISVESMLSEYTEERRAAEKLHDLHVLYQQM 172

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             E L +          + L+  +     +     I I G     P    ++  +  H   
Sbjct: 173  EEHLQDEYVH--SEDYLNLLAQQIPSAEEIKGAHIYIDGFYQFTPQQLLVIEQLLLHAAK 230

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
                  +D        N +        +          + L +L         +      
Sbjct: 231  VTAAFTVDQSYHDRQPNELDLFRMTGKTY---------FQLYQLAKECGADISETIF--- 278

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                   R+     +              ++      Q+    + + ++ ++R E   +A
Sbjct: 279  ------ERNHRHLYTPDLAYLEHQYEQRPVQP----YQENTPHLTVSKSASKRAEIEGVA 328

Query: 376  IALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILT 431
              +   + E     +  +++    +  +         + I   I     +       ++ 
Sbjct: 329  RDILDLVREKGLRLRDISVVARHVDDYKDTLKEVFRDYDIPFFIDGNESMQYHPLIELIR 388

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            S L+ I     + A+   VK          +       + LE   +          +   
Sbjct: 389  SSLDVIKGNWRYEAVFRCVKTEFLFPLEITKNKAREQADQLENYCIAYGVKGERWTNGSR 448

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                R  +   +      +  + +   ++   +   + Q    L   +  ++        
Sbjct: 449  FHYRRFQSLDEDFRQTDQEIEMEQMLNDVKEWITPPLYQLQKRLKNAQKVRDMVEAVYVF 508

Query: 551  SDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             +  ++       +    +  R    +   +    +  L  + ++     + +   +  +
Sbjct: 509  LEEIQVPDKLEKARLEAEEAGRLAEAMQHGQVWDAVIQLMDEFVDMLGDEELSFPLFQQM 568

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            I   +              +FI     SR+     + + G+N+GV P   +    LS   
Sbjct: 569  IDTGLASLKFALIPPSLDQVFIGSMDLSRMYQVKCMFIIGVNDGVIPARPSDESVLSEDD 628

Query: 669  Q-------SDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRE-NNIPTIASRWLQRL 719
            +       ++L     E+ + +    ++  +  + HL  + +  +      + S  ++  
Sbjct: 629  REWLKRAGAELAETGKERLLDEQFLIYQALSSPSHHLYLSYAASDAEGRSLLPSPLIKYC 688

Query: 720  LVLGG-------------------------------------TDFFDNLKKRGQCYLDWT 742
              L                                         + +     G  +  + 
Sbjct: 689  QELMPNHQQALYVLDPELLEDDEQLKFVANEHVSLSYTISQLQQWLNQYPISGVWWSVYN 748

Query: 743  RKLDYTTKQ--------------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
              +    +                   +P     L       S S +++     ++ +A 
Sbjct: 749  YLMTSPNRDVSKNIMSSLFFTNRAKPLKPNVTKELYGDHIQGSVSRMEKFNACAFSHFAS 808

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-----------INHLMKQ 837
              LKL          +  D G LFH+ +  +    + +                 H ++Q
Sbjct: 809  HGLKLK--DRQFYKLEAPDIGQLFHSALKHISDTLVEQKKDWKNLTKEDCVTYSRHAIEQ 866

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEHEEKIQSSIEKIFVNIPAKMAIESIG 895
            +     ++  L  +     +    KI      +  E    S    + + +          
Sbjct: 867  LAPRLQKEILLSSNRHAYIKEKLQKILIRVSSILSEHAKVSGFSPVGLELGFGGQGPLPP 926

Query: 896  IH----------LTGFADRIDLLKSGF----VDITDYKTGDNP-KKETAQKLIDPQLSLE 940
                        L G  DR+D    G     + I DYK+ +           +  Q+   
Sbjct: 927  FTFQLKNGCTMELVGRIDRVDK-AEGSKGLFLRIVDYKSSEKGLDLAEVYYGLALQMLTY 985

Query: 941  AAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
                   S   +      A + Y  +   F    I   + +   +   +  +K L
Sbjct: 986  LDLTITYSKEWLGIEATPAGILYFHIHDPFIQAPIPLAEDEIEQEIFKKFKMKGL 1040


>gi|157691775|ref|YP_001486237.1| ATP-dependent deoxyribonuclease subunit B [Bacillus pumilus SAFR-032]
 gi|157680533|gb|ABV61677.1| ATP-dependent deoxyribonuclease subunit B [Bacillus pumilus SAFR-032]
          Length = 1173

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 114/1075 (10%), Positives = 282/1075 (26%), Gaps = 153/1075 (14%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSL 81
             A+L   + E  R DPL P     +   VP +  +  L   E  + +     I   + S 
Sbjct: 20   TAILEE-IKEQLRLDPLGPP----IIFLVPDQ--MTFLMEYELAKTSEAGGMIRAKVFSF 72

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
              +           +           R    +  I +   K+ +  KD +      +   
Sbjct: 73   TRLAWSILQQTGGAN-----------RQFVTSTGIQMLLRKVIEEQKDKFK-----VFKK 116

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNE----KYGMWWLLA--ADFLKIASKYW 195
             ++     + +   +   +      E++  +  E    +Y      A     L +  +  
Sbjct: 117  ASDKPGFVEQIEKTMAEFKRYCMLPEEIEKISVESMLSEYTEERRAAEKLHDLHVLYQQM 176

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             E L +          + L+  +     +     I I G     P    ++  +  H   
Sbjct: 177  EEHLQDEYVH--SEDYLNLLAQQIPSAEEIKGAHIYIDGFYQFTPQQLLVIEQLLLHAAK 234

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
                  +D        N +        +          + L +L         +      
Sbjct: 235  VTAAFTVDQSYHDRQPNELDLFRMTGKTY---------FQLYQLAKECGADISETIF--- 282

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                   R+     +              ++      Q+    + + ++ ++R E   +A
Sbjct: 283  ------ERNHRHLYTPDLAYLEHQYEQRPVQP----YQENTPHLTVSKSASKRAEIEGVA 332

Query: 376  IALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILT 431
              +   + E     +  +++    +  +         + I   I     +       ++ 
Sbjct: 333  RDILDLVREKGLRLRDISVVARHVDDYKDTLKEVFRDYDIPFFIDGNESMQYHPLIELIR 392

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            S L+ I     + A+   VK          +       + LE   +          +   
Sbjct: 393  SSLDVIKGNWRYEAVFRCVKTEFLFPLEITKNKAREQADQLENYCIAYGVKGERWTNGSR 452

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                R  +   +      +  + +   ++   +   + Q    L   +  ++        
Sbjct: 453  FHYRRFQSLDEDFRQTDQEIEMEQMLNDVKEWITPPLYQLQKRLKNAQKVRDMVEAVYVF 512

Query: 551  SDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             +  ++       +    +  R    +   +    +  L  + ++     + +   +  +
Sbjct: 513  LEEIQVPDKLEKARLEAEEAGRLAEAMQHGQVWDAVIQLMDEFVDMLGDEELSFPLFQQM 572

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            I   +              +FI     SR+     + + G+N+GV P   +    LS   
Sbjct: 573  IDTGLASLKFALIPPSLDQVFIGSMDLSRMYQVKCMFIIGVNDGVIPARPSDESVLSEDD 632

Query: 669  Q-------SDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRE-NNIPTIASRWLQRL 719
            +       ++L     E+ + +    ++  +  + HL  + +  +      + S  ++  
Sbjct: 633  REWLKRAGAELAETGKERLLDEQFLIYQALSSPSHHLYLSYAASDAEGRSLLPSPLIKYC 692

Query: 720  LVLGG-------------------------------------TDFFDNLKKRGQCYLDWT 742
              L                                         + +     G  +  + 
Sbjct: 693  QELMPNHQQALYVLDPELLEDDEQLKFVANEHVSLSYTISQLQQWLNQYPISGVWWSVYN 752

Query: 743  RKLDYTTKQ--------------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
              +    +                   +P     L       S S +++     ++ +A 
Sbjct: 753  YLMTSPNRDVSKNIMSSLFFTNRAKPLKPNVTKELYGDHIQGSVSRMEKFNACAFSHFAS 812

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-----------INHLMKQ 837
              LKL          +  D G LFH+ +  +    + +                 H ++Q
Sbjct: 813  HGLKLK--DRQFYKLEAPDIGQLFHSALKHISDTLVEQKKDWKNLTKEDCVTYSRHAIEQ 870

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEHEEKIQSSIEKIFVNIPAKMAIESIG 895
            +     ++  L  +     +    KI      +  E    S    + + +          
Sbjct: 871  LAPRLQKEILLSSNRHAYIKEKLQKILIRVSSILSEHAKVSGFSPVGLELGFGGQGPLPP 930

Query: 896  IH----------LTGFADRIDLLKSGF----VDITDYKTGDNP-KKETAQKLIDPQLSLE 940
                        L G  DR+D    G     + I DYK+ +           +  Q+   
Sbjct: 931  FTFQLKNGCTMELVGRIDRVDK-AEGSKGLFLRIVDYKSSEKGLDLAEVYYGLALQMLTY 989

Query: 941  AAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
                   S   +      A + Y  +   F    I   + +   +   +  +K L
Sbjct: 990  LDLTITYSKEWLGIEATPAGILYFHIHDPFIQAPIPLAEDEIEQEIFKKFKMKGL 1044


>gi|225174782|ref|ZP_03728780.1| ATP-dependent nuclease subunit B [Dethiobacter alkaliphilus AHT 1]
 gi|225169909|gb|EEG78705.1| ATP-dependent nuclease subunit B [Dethiobacter alkaliphilus AHT 1]
          Length = 1147

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 128/1009 (12%), Positives = 261/1009 (25%), Gaps = 139/1009 (13%)

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
            E  ++ G  +     + S   +      +       L P +S + R + L RL+   + +
Sbjct: 50   ELAQMCGGGTFRA-QVLSFRRLAYHLLQSKG----GLPPVMSELGRQMVLRRLLQESQAE 104

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            L    +              A      + LA  I  +       E L            L
Sbjct: 105  LTIFGR-------------AAQQPRFCEQLAVQIRELNNYLVSPEMLKNQAASPETGEAL 151

Query: 183  LA-ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
             +    L      +       +   P      L  A  E         + + G  G  P 
Sbjct: 152  RSKLSDLSTVFAAYRTFTA-GSFMDPEDTLAILAAAVEEG-ALPAGTRVWVDGFAGFTPQ 209

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
              +++S + +      V   LD          I  +       + T  T+ Q  L +L+ 
Sbjct: 210  EFQVLSALFSTAEHVEVALCLDP-------RHIPAQPQEDELFHPTLETYLQ--LRRLVG 260

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
               +     ++L     +           F   +   +         + +  +   ++ L
Sbjct: 261  EAGVPALPPEQLPLDEKQTR---------FAHSEALQVLEAGFGRLPVESYPREAEEIRL 311

Query: 362  IEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRVKLELTRFGINIDISA 417
            + A   R E  ++A  +   + E     +   +I  D +     V      + I   +  
Sbjct: 312  VTAAGTRAEVEAVACDILHLVREKGWRFRDIGMILRDFSRYHDLVAAIFQEYQIPFFVDE 371

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
                +       L S L+A         +  L+K  L              + LE  A  
Sbjct: 372  RRSATHHPLVEFLRSALDAAQANFALEPVLQLLKTDLLPIS------RETADKLENYARA 425

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                    +D K        +   +           EE  E   +           +   
Sbjct: 426  HGIRGSRWLDGKPWSFRLRLSLDESRDTATETDAHLEEINEGKTVFGRIFTPFNRQVGGS 485

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                   C  +     +      LQN   ++          +    +  L  +I+ T   
Sbjct: 486  ARPAADFCRAIWALLESTDAELQLQNWSEEDANPATAAQHRQVWSGVVELLEQIVSTLGE 545

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
             + +  E+  I+   ++  T+         + +     SR        + GL+EG +P  
Sbjct: 546  RQISLQEFSQILQAGLEALTLGLVPAGLDQVIVGSVERSRQPRLRAAYVLGLSEGDFPAR 605

Query: 658  TAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIP 709
              +   L+   +        DL +   +K   +    +     +   L  +  L +    
Sbjct: 606  LKEEGLLADEEREALQENGVDLAVTKRQKLFHEQYLSYIALTRSSEYLWVSCPLADEEGK 665

Query: 710  T-IASRWLQRLLVLGGTDFFD---NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                S    RL      +      N     +                            +
Sbjct: 666  AKRPSALFNRLRETFPYNDVHFFGNTPDSKEDLHALAGAEKSAAALLLQAGGVAAGGAMS 725

Query: 766  QPRTY----------------------------------------------SFSEIKQLI 779
                                                               S S ++Q  
Sbjct: 726  DFWAAAYNEALSIPQVYNRMRMLWPSLTERNHIAPLPAETVLEILGTELKSSVSRLEQFA 785

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-------EIN 832
              P+A +AR +L+L     F+   +  + G  FH+ +    +    +          E  
Sbjct: 786  RCPFAHFARYVLRLQERHEFR--VEAPEMGNFFHHALRLFAESLQAEGLDWAQLETEEAQ 843

Query: 833  HLMKQIIDSHFEKE----NLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIP 886
              M  I++    +      L             +     +    E   +S  + + V + 
Sbjct: 844  ARMNSIVEELIPRLQGEILLSSARMRYLAERLKETLAQAVAALTEHARRSQFKTVAVEMS 903

Query: 887  AK--------MAIESIGIHLTGFADRIDLLKSGF---VDITDYKTGDNP---KKETAQKL 932
                      +      + L G  DRIDL ++     + + DYK+   P   K       
Sbjct: 904  FGSGKTPAWQLRCGQTQLKLYGQIDRIDLAEAEGKAWLRVIDYKS--TPIELKLSDVWHG 961

Query: 933  IDPQLSLEAAALKAGSFS-QIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
            +  QL    A +K  + +      + A   Y  + + ++       +  
Sbjct: 962  LSLQLLAYLAVVKENARAFSALPAESAGALYFGIHKPYERLDNPPPEAV 1010


>gi|309782348|ref|ZP_07677074.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
 gi|308918884|gb|EFP64555.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
          Length = 947

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 161/1044 (15%), Positives = 303/1044 (29%), Gaps = 125/1044 (11%)

Query: 10   TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEI 67
              AP   F      A         +R+   +     + TI VPT   I  +R        
Sbjct: 5    AFAPGPAFLSRAADA--------AWRFLDAHAQSPGTATIVVPTAAQIPGVRGALHASAQ 56

Query: 68   TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
                  +LP I +LG      +  DL          + + RLL + + +           
Sbjct: 57   AAGTPRLLPRILTLG-----HWLLDLPPEAGSPAGRTPLSRLLAVQQALKT--------- 102

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
                           A    +A+ L  + D +       +  H+  + +        A+ 
Sbjct: 103  --QAWLREALGAQDDAALWGVAQVLVTVSDELSQRWLTLDAAHSGADGRADELESALAEA 160

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            L+        +L E    +     +   R  +              G+   IP   R M 
Sbjct: 161  LERTY----AQLSERFLGTESRIVLTFWRLLS--------------GAADPIPMRLRAMQ 202

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             + +   G IV           +             S       P               
Sbjct: 203  RLLDELRGPIVWMSPTDPEAVDLDFLQRAAERVPVLSIGYDWNAP--------------- 247

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                            +    ++ L     +        +     Q     + +  A   
Sbjct: 248  -------ESGASAAPSTHADFRNLLLHAWPECATPAQAADDAAAAQLPAPILRIAGAARF 300

Query: 368  REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
             +EA   A  L   L+  ++  AL+  DR +ARRV+  L R  + +    G  LSTT  +
Sbjct: 301  EDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKLSTTRAA 360

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            + L   ++ +    D  A+  L+K P           + A  A     +R +  S     
Sbjct: 361  AALMRWVDVVQGDGDTAALLDLIKSPFCLRDADAGTATPAWVAELERRVRRHNVSGGWGR 420

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
            L+ LV DR A+           +       + A L                       G+
Sbjct: 421  LRRLVTDRPASDAEGEAKVSRLADRLGVLADEAALWRRA-------------------GS 461

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             ++  W  L    L  + +    +  +   +          S    T +  + +  EW  
Sbjct: 462  ATLDAWVTLLAGTLDRLHMRTGLQNDDAGRQLLDWIDRLRTSIHGSTDAGARFSLTEWRA 521

Query: 608  IITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            +++ L++          +   + IL    +R+  FD +++ G ++   P    +  F S 
Sbjct: 522  LLSMLLESAVFSEPSPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPEWLFFSN 581

Query: 667  VMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQRLLVLGG 724
             ++ +L L    +   Q A D   +      ++ T         P   S WL+RL     
Sbjct: 582  DVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPHRLSGWLERLQRRL- 640

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                  ++      L   +     T  P    P   P       T S +    L   PY 
Sbjct: 641  --AVSGVRIDTSVTLPSLQTTSQPTDMPAPAAPTLVP------STLSAAAYNSLRRCPYQ 692

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDS 841
             +  R+L+L  +     + ++ D G + H I+    ++ +     +  +   L++ I D 
Sbjct: 693  FFVGRMLRLGELEEVSDELEKRDIGEILHAILHRFHRQLLETPMHDPADRLSLLQTITDE 752

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAI---ESIGIH 897
             F          + +   +  +  S+L  +   ++         +    +I   +   + 
Sbjct: 753  QFGPLLAEDGNALRFYRRWLGVMPSYLAWQAAREADGWRFEAGEVDVDTSITLPDERALR 812

Query: 898  LTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            L G  DRID+     V + DYKT       +       D QL              +   
Sbjct: 813  LRGRIDRIDVHDEHGVAVLDYKTQSQMALVRRAKTPFEDCQLPFY----------GVLDA 862

Query: 956  KVANLFYIRLKQ--KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
            +  +  ++ L    +     +         D L E+  K++  +                
Sbjct: 863  RADSGGWVSLDGEARGDKRDVALPDFTQVVDWLIEQMQKDMTALAAGAPLPAFG------ 916

Query: 1014 LSEKSNIQSEYDHLARVAEWREEY 1037
              E +        L R   W E  
Sbjct: 917  -DESACRYCAARGLCRKGYWTEGA 939


>gi|228990220|ref|ZP_04150189.1| ATP-dependent nuclease, subunit B [Bacillus pseudomycoides DSM 12442]
 gi|228769503|gb|EEM18097.1| ATP-dependent nuclease, subunit B [Bacillus pseudomycoides DSM 12442]
          Length = 1176

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 127/1016 (12%), Positives = 273/1016 (26%), Gaps = 155/1016 (15%)

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
            +   I   G  ++I   + S   +  +        S      +      + L +++   +
Sbjct: 54   QQALIGNEGVSASIRAQVFSFSRLAWKVLQEVGGASRLH---IDEAGVHMLLRKIVEARK 110

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKY 177
              L              +    A      ++L  +I   +       +++ +    +   
Sbjct: 111  EGL-------------YVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHS 157

Query: 178  GMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
                          L++    +   L+         Y   L+    +         I I 
Sbjct: 158  SGDEQKLLANKMYDLQLLYDDFERALIGKYL-DSEDYLQLLVEKLPDSDY-VKGAEIYID 215

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
            G     P    ++  +        +   +D    +   + +                   
Sbjct: 216  GFHSFSPGELEIIRQLMICGARITITLTVDEKTLSQPTSELD------------------ 257

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                 L     +  E VK+L          ++ + +       +        E++     
Sbjct: 258  -----LFYQTVLTYEKVKQLAREEKIAVESTISMREQPRFLSPALAHLEAEFESRPSKKF 312

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRF 409
            +   D+ L  A N R E   +A  +R  +   +   +   ++  +  +    +K   T +
Sbjct: 313  QSEPDITLYTAANLRAEVEGVAREIRRLVAEEEYRYRDITVLLRNGESYYDVMKTLFTDY 372

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAK 468
             I   I    P+S       + S L  I     + AI   +K  L       K  +    
Sbjct: 373  DIPHFIDEKRPMSHHPLIECIRSALEVISGNWRYDAIFRCIKTELLYPLDVRKESMHEEM 432

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--- 525
            +  E   L            +     R  +      +     R  EE       +V    
Sbjct: 433  DEFENYCLAYGVQGKRWTADEPWTYRRYRSLDGVNGMQTDSEREMEEKINRLRDVVRTPI 492

Query: 526  -HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
              + + +    +      +    L   D  K            E   L     ++  + +
Sbjct: 493  IRLQKRLKRASSVVQMCEAVYLFLEELDVPKKLEDLRMR-AEAEGNFLFASDHDQVWEEV 551

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             +L    +E     K +   +ID++T  ++             + I     SRL +    
Sbjct: 552  MNLLDTFVEMLGEEKMSRSMFIDVMTTGLEALQFANIPPSLDQVLIANIDRSRLSDIRAA 611

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMANGTRH- 696
             + G NEG+ P   +    LS   +        +L   T +  + +    ++        
Sbjct: 612  FVIGANEGIIPAAPSDEGMLSDEEREFLVTAGVELAPTTRQTLLEEQFVIYQTVTRASEK 671

Query: 697  LIYTRSLREN-NIPTIASRW---------------------------------------- 715
            L  +  L +      ++S +                                        
Sbjct: 672  LYISCPLADEEGKTLLSSSFIKKVKRMFPSVKEVFVTNDVNDLSRQVQISYVATPEVTLS 731

Query: 716  --------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------P 761
                     +R    G  DF+ ++        +W +K         Y+            
Sbjct: 732  YVTQQLQNWKRYGFEGNLDFWWDVYNFYVTSPEWKQKSSRVLSSLFYRNRAQKLSSVVSR 791

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
             L       S S ++      YA +A+  L L     F    D  D G LFH  + ++  
Sbjct: 792  DLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKKIAD 849

Query: 822  KRI--NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---------HLFHKIS--HSFL 868
            K +  N+   +++    + + +   +E  P     I               +I    S +
Sbjct: 850  KLLRENRTWADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRNYYLKQKLQQIIFRTSLI 909

Query: 869  EHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-V 913
              E    S    + + +P  M    ++  +   L         G  DR+D    ++G  +
Sbjct: 910  LREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFL 969

Query: 914  DITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965
             I DYK+             +  Q+      + + +     +      A + Y  +
Sbjct: 970  RIIDYKSSTKALDLTEVYYGLALQMLTYLDVVISNANTWMKKDGTASPAGVLYFHI 1025


>gi|305679906|ref|ZP_07402716.1| UvrD/REP helicase [Corynebacterium matruchotii ATCC 14266]
 gi|305660526|gb|EFM50023.1| UvrD/REP helicase [Corynebacterium matruchotii ATCC 14266]
          Length = 1079

 Score =  205 bits (522), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 122/1050 (11%), Positives = 281/1050 (26%), Gaps = 146/1050 (13%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK---KSTILPIIKSLG 82
            +   L++              + I   +K+A   LR   +        KS    +++S+ 
Sbjct: 71   VTSLLLDTVARRIEAGEDPERILIVAASKQAASRLRRGIVARVATSHYKSAGT-MVRSVH 129

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
             +              L   ++  ++   +  L+        +  ++  P+ P+++    
Sbjct: 130  SLAFALLRRMRDEKLRL---ITGAEQDAVIRELLQGHSELTGEGQQEQGPQVPITIWPEE 186

Query: 143  AN----AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                   +  A+ L D +          EDL  L  E +   W+ A  FL+     + + 
Sbjct: 187  CRDGIVMVGFARGLRDFLLRTVERGLGPEDLERLGEEHHRPMWVAAGKFLRE----YEQV 242

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
            +      S    ++  M  E +   + +   +I+  +    P +A L++   +  N A++
Sbjct: 243  MSLGGTHSLSASELVSMALEHDVPPEISYSTVIVDDAQHLDPKSAELVARFIDQANFAVI 302

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
                D       +     +       +     H  Y +                      
Sbjct: 303  --AGDPDQSVFRFRGARPQFLQHHPVDHELRLHTSYRVQA-------------------- 340

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                                          +   +   +        +    A  I    
Sbjct: 341  ------------------------RPGAPGVHFHRADSTGNMFEFVADRIRRARLI---- 372

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAI 437
                D   +  A++     +   ++  L   G+ + I    I LS     S L   + A+
Sbjct: 373  ---DDVQWRDIAVVVRSVGMITPIRRALLAAGVPVHIDPTDIVLSQQRIVSALILAVRAV 429

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                    +  L   P+                   +   G   +      +  +     
Sbjct: 430  HHGLTLAELEELALGPIGGADAVTLRRLLRGLRQVELRRTGAVAAAFQTPTRRSLEVLSE 489

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                    P   + + +   +    ++  I Q I       + +       S ++  K  
Sbjct: 490  LVLEPEPDPGLVAEVEQVLTDREQDILGRIRQVIAAGRQGGSVEEVLWEIWSATNLDKHL 549

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                        +   +L         +  + +     +           I  + +    
Sbjct: 550  SAVSMRGGAAGSQADRDLDAVMALFDAAGDWVERRPNSTIDAF----ITHIEEQELPTGV 605

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----- 672
               ++     + I+    +    + T+I+ G+ E  WP  +       +    DL     
Sbjct: 606  RDRRLVVPDAVNIVTAHATSGQEWHTVIICGVQEDSWPSLSETGTLFGQEELVDLIDDGI 665

Query: 673  ----NLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN--IPTIASRWLQRLLVLGGT 725
                 +    + + +    F MA     + +   ++ + +   P   SR+++  +     
Sbjct: 666  APGTTIARVTEQLREERRLFHMATSRATNTLIITAVDDPDAAEPQEPSRFVRDYMQPDSP 725

Query: 726  DFFDNLKKR--------GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            +     ++R            L +TR L         +R    P    + R  +  ++ +
Sbjct: 726  EDPWEPQERVVGEQQIDVDNPLTYTRLLSAPAIVAELRRVVTNPDETQRARNQAARQLAR 785

Query: 778  LI------NDPYAVY--------------------------ARRILKLDFIPHFKKDPDR 805
            L         P   +                                +  I   ++    
Sbjct: 786  LAEAGVPGAHPDQWWGIAGPSTTRSLPVSSLSPSRIEAGMACPLRATMSRIFTEEELVFP 845

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RG L H     +    +N ++      +                  +        +  
Sbjct: 846  LLRGRLLHAFAEAVA---LNVDSDVARLKIMDAYQEILAAPIWLRSHRLDTW---RTVLD 899

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-P 924
                  E  +   E++ V + A++ I   G+ L G  DR++    G   I D+K+G N P
Sbjct: 900  RTKMWIETHRHIFEQVGVEVEAEVTIA-EGMKLRGRIDRLEKTMDGDYHIVDFKSGTNHP 958

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQID---------CRKVANLFYIRLKQKFKIDCIT 975
             ++T    I  QL      L  G F                V     +    +     I 
Sbjct: 959  SEKTIADHI--QLLTYQLILHHGVFDGTKIRTARSTESGMTVDGATLVY--PEKDTKNIW 1014

Query: 976  NDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
            +  +    +E   +    L +++  L+  E
Sbjct: 1015 SITQAAKTEEQLAEFEDQLPDLLQALRGPE 1044


>gi|187928126|ref|YP_001898613.1| hypothetical protein Rpic_1033 [Ralstonia pickettii 12J]
 gi|187725016|gb|ACD26181.1| conserved hypothetical protein [Ralstonia pickettii 12J]
          Length = 951

 Score =  205 bits (522), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 159/1051 (15%), Positives = 314/1051 (29%), Gaps = 135/1051 (12%)

Query: 10   TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE--I 67
              AP   F      A         +R+   +     + TI VPT   I  +RS       
Sbjct: 5    AFAPGPAFLSRAADA--------AWRFLDAHAQSPGTATIVVPTAAQIPGVRSALHANAQ 56

Query: 68   TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI--LIWRNKLPD 125
                  +LP I +LG      +  DL          + + RLL + + +    W  +   
Sbjct: 57   AAGTPRLLPRILTLG-----HWLLDLPPEAGSPAGRTPLSRLLAVQQALKTQAWLREALG 111

Query: 126  IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-ALKNEKYGMWWLLA 184
               D        + ++ ++   L++    +       +++ + L  AL       +  L+
Sbjct: 112  AQDDAALWGVAQVLVTVSD--ELSQRWLTLDAAHSGADRRPDALESALAEALERTYAQLS 169

Query: 185  ADFL----KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
              FL    +I   +W        A+ P+  ++  MR   + L     GPI+    +    
Sbjct: 170  ERFLGTESRIVLTFWRLL---SGAADPIPMRLRAMRRLLDEL----HGPIVWMSPSDPEA 222

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                 +   A       +            WN     ++   S++  +     ++     
Sbjct: 223  VDLDFLQRAAERVPVLSI---------GYDWNAPEAGTSATPSTHADFRDLLLHA----- 268

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                                                 +        +   + +     + 
Sbjct: 269  -----------------------------------WPECATAAQAADDGADARMQAPILR 293

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            +  A    +EA   A  L   L+  ++  AL+  DR +ARRV+  L R  + +    G  
Sbjct: 294  IAGATRFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWK 353

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            LSTT  ++ L   ++ +    D  A+  LVK P           + A  A     +R + 
Sbjct: 354  LSTTRAAAALMRWVDVVQGDGDTAALLDLVKSPFCLRDADAGTATPAWVAELERRVRRHN 413

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
             S     L+ LV DR A   +       +     +   +                  +  
Sbjct: 414  VSGGWGRLRRLVADRPANDADADADGEAKVSRLADRLGVLAD---------------EAA 458

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                 G+ ++  W  L    L  + +    +  +   +          S    T +  + 
Sbjct: 459  LWRRVGSATLDAWVTLLAGTLDRLHMRTGLQNDDAGRQLLDWIDRLRASIHGSTDAGARF 518

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
            +  EW  +++ L++          +   + IL    +R+  FD +++ G ++   P    
Sbjct: 519  SLTEWRALLSMLLESAVFSEPSPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQP 578

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQ 717
            +  F S  ++ +L L    +   Q A D   +      ++ T         P   S WL+
Sbjct: 579  EWLFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPHRLSGWLE 638

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL                   L  T +                      P T S +    
Sbjct: 639  RLQRRLAVCGVRIDTSVVLPSLQTTSQ---------PAGMPAPAAPVLVPSTLSAAAYNS 689

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHL 834
            L   PY  +  R+L+L  +     + ++ D G + H I+    ++ +     +  +   L
Sbjct: 690  LRRCPYQFFVGRMLRLGELEEVSDELEKRDIGEILHAILHRFHRQLLEVPMHDPADRQAL 749

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAI-- 891
            ++ I D  F          + +   +  +  S+L  +   ++         +    +I  
Sbjct: 750  LQAITDEQFGPLLAEDGNALRFYRRWLGVMPSYLAWQAAREADGWRFEAGEVDVDTSITL 809

Query: 892  -ESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKAGS 948
             +   + L G  DRID+     V + DYKT       +       D QL           
Sbjct: 810  RDERPLRLRGRIDRIDVHDEHGVAVLDYKTQSQMVLVRRAKAPFEDCQLPFY-------- 861

Query: 949  FSQIDCRKVANLFYIRLKQ--KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
               +   +     ++ L    +     +         D L E+  K++  +         
Sbjct: 862  --GVLDARAVAGGWVSLDGEARGDKRDVALPDFTQVVDWLIEQMQKDMTALSAGAPLPAF 919

Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
                     E +        L R   W +  
Sbjct: 920  G-------DESACRYCAARGLCRKGYWTDGA 943


>gi|299140512|ref|ZP_07033650.1| conserved hypothetical protein [Prevotella oris C735]
 gi|298577478|gb|EFI49346.1| conserved hypothetical protein [Prevotella oris C735]
          Length = 923

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/520 (14%), Positives = 160/520 (30%), Gaps = 55/520 (10%)

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
               +      N   +               TL +    +I T   ++A+   +  +I +L
Sbjct: 414  IVDILQEVGHNYTAEGEEDPFVQESIFRMYTLFNRLEALI-TAGDLEADFNIYNRLINQL 472

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            I   +V    E    L I+G LE+R L+FD +++   NEG  PK      F+   ++   
Sbjct: 473  ISSTSVPFHGEPVIGLQIMGVLETRNLDFDHILILSCNEGNMPKGVNDTSFIPYAIRKAF 532

Query: 673  NLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDN 730
             L T +  +   A+ F       + +    +   +   T   SR++ +++V         
Sbjct: 533  GLTTIDNKVAIYAYYFHSLLQRAQDITLAYNKATSKTATGEMSRFMLQMMVESQQKIQFR 592

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
                 Q  +           +    +      +       S + +   +      Y R +
Sbjct: 593  NLNAQQVPMQ--------NIKKAIVKNPKVMEVINSIERISPTALTTYLRCQMRFYYRYV 644

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKK------RINKNTPEINH---LMKQIIDS 841
              +    + + + D    G +FH       +           +  +      L+ ++++ 
Sbjct: 645  AGIKEPDNEEDEIDNRIFGNIFHRAAELFYQDKNHGGIIHESDIEDALKDKSLLTRLVER 704

Query: 842  HFEKENLPP---------HIDIIWRHLFHKISHSFLEHEEKIQSS---IEKIFVNIPAKM 889
             F ++              + +I R +        L+ ++K+        +  V    ++
Sbjct: 705  AFREKLFEVNETRDIKYNGLQLINRQVIIDYLKRLLQIDQKLTPFSILGLEESVEKAFEI 764

Query: 890  AIESIG--IHLTGFADRIDLLKSGF---VDITDYKTGDNPK-----------KETAQKLI 933
                    I+L G  DRID ++      + + DYKTG N              E      
Sbjct: 765  DTPQGPKQIYLFGNIDRIDEIQDNHGAFIRVVDYKTGSNNSMNVKNIDDIFNPEKIDNHT 824

Query: 934  D--PQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITN--DKKKYSADELSE 988
            D   Q  L +  L+           V+  L +I+       D       +          
Sbjct: 825  DYYLQAILYSLILRNEHPINAANHPVSPALLFIQHATGKDYDPTLQLDKQPITDVANYQS 884

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            + +  L  ++  + N +  F        K      Y ++ 
Sbjct: 885  EFMDRLKVLIEDIFNPDISFD--PTEKTKQCQYCPYRNIC 922



 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/468 (13%), Positives = 132/468 (28%), Gaps = 98/468 (20%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F + +   +L+                L+ VTI  P KRA   L  E       +    P
Sbjct: 4   FLQYVAEDILHKNGTN-----------LSRVTIVFPNKRASLFLNEELAR-MANRPIWSP 51

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL-------ELARLILIWRNKLPDIIKD 129
              ++ ++  E     ++    L   + ++ ++        E       W   L     D
Sbjct: 52  TYITISELFREHSDKTVVDQIKL---ICDLHKIFNACTGSCETLDHFYGWGQVLLTDFDD 108

Query: 130 LYPESP--------LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
           +             L       +A +L +   +++          +D+ +   E++   W
Sbjct: 109 IDKNMGDAHQIFTNLKNIHELDDASYLTEEQKELLKKF--FGNFSDDIESKLKERFINLW 166

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                  +     + E L +   +        ++    +  +       I  G       
Sbjct: 167 SN----FEEIYTRFNECLAQQGLAYEGALYREVVE---KTEIDFQNDNYIFVGFNMMQIV 219

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
             +L   +      A      D +              N         T+ +  L    +
Sbjct: 220 EQKLCERLQKLGK-AHFYWDFDDYY-----------MKNQYGIKHEAGTYIRQYLKYFPN 267

Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
            LDI  + +                                           +   ++  
Sbjct: 268 ELDITNKQIYAN---------------------------------------FEQPKNITY 288

Query: 362 IEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
           + A  E  +A  I+  L+ +   ++ +++A++ AD NL   V   L     +++I+ G P
Sbjct: 289 LSATTENIQARYISTWLKQNGRIDDGRRTAIVLADENLLPTVIHCLPPELKHVNITTGYP 348

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMA-------IATLVKHPLAKFGFPE 461
           L     +S +  L+N                    L++HP  K+   +
Sbjct: 349 LQHAPIASFVRLLINLHTMGYSANRHSFSKKWRTMLMRHPYMKYIENQ 396


>gi|220934454|ref|YP_002513353.1| DNA helicase/exodeoxyribonuclease V, subunit B [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219995764|gb|ACL72366.1| DNA helicase/exodeoxyribonuclease V, subunit B [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 958

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 143/909 (15%), Positives = 277/909 (30%), Gaps = 120/909 (13%)

Query: 69  GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK 128
           G ++ + P I SL   V E+         +  P + +  R L L   +            
Sbjct: 65  GVEALLGPRITSLRQWVMEQ------DPAHGAPLLGDHGRELMLFEALREHPQLFERH-- 116

Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW------- 181
                          +   L   L ++   +          +    ++    +       
Sbjct: 117 ---------------DTWRLVDTLLELFRELTLSGATPPAAYEAFVQRLREAYGLGGDDS 161

Query: 182 ---LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTG 237
                     +I    W   L +             +RA A         G +  AG   
Sbjct: 162 ACLEPLGREARIVHTLWHAWLEQQRQEGREDPDARYLRALACLEPGNIPPGSLYAAGYDE 221

Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            +PA   L++ +        ++                  +       T+    PQ   +
Sbjct: 222 LLPAETALLNGLTREGRLHWLV---------------GLPAAPGMPQPTSDGADPQTPFS 266

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
             LD               ++    R   ++ +   P                       
Sbjct: 267 AFLDQ-----------AFDTDGAPLRERALAFAQRHPS-----------------SPATP 298

Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            +AL+ A++   +A ++ I +R  L E  +   ++T DR LARR++  L R GI++D   
Sbjct: 299 RLALLGAEDAEAQAAALDIRIRAWLLEGHRHIGVVTDDRRLARRLRALLERAGIDLDDPG 358

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
           G  LSTT  ++ L   L A+ +  ++  +  ++K P       E++L       + V LR
Sbjct: 359 GWALSTTRAAAALERWLEALEEDFEYQPLMDVLKSPFVFPERTEEHLFAVYRLEQDVMLR 418

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            N         ++L   R    K    +     R +     L   L +            
Sbjct: 419 ENIP-------RNLARMREHLFKRARRLGPASERSTRAVASLLDALEE---------AAV 462

Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                         DW       L+ +         +L  +  G+ L      +      
Sbjct: 463 PFRGLVRGAARPAGDWLAALQESLRRLG-----MQASLEADPAGRRLLEEVRAMAADLGS 517

Query: 598 IK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                +  E+   + R+++    +P    +  + ++   E+ L  FD LI+   +    P
Sbjct: 518 RPLSMDWREFRTWLGRVLETRHFRPHPRPAP-VRLMSLGETALARFDALIIAAADGEHLP 576

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASR 714
            +       +  ++  L L+     + +    F         ++ T        P   + 
Sbjct: 577 GHEPVRALFNDGVRHALGLEAWHDRVARQQGRFRRLLEAAPRVLITWQRERGGGPQRPAP 636

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYL-----DWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
           W++ +       +   L+               +  D        +RP P  P    P  
Sbjct: 637 WVELIDAFHRLAWGAPLRDEALEAWLKTPDALVQSPDTAPLPATPQRPAPLLPAAHVPAK 696

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
            S S  + LI+ PY  YA R L L       +   + D G   H  +            P
Sbjct: 697 LSASAHQDLIDCPYRFYAARGLGLAPPEELAEALSKADYGERVHLCLQAFHGGTPELPGP 756

Query: 830 -----------EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
                      E   L++ I  + FEK+     +   W   +  +  ++L+   +   + 
Sbjct: 757 WQGPLDEAHRAEAQTLLETISKAVFEKDLEDNFMHRGWLARWRALIPAYLDWAIERAEAW 816

Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
           +     +  ++A+ +  + L G  DR+D  ++G   + DYKTG  P ++        QL 
Sbjct: 817 QVQDTEVSREVALATGTV-LKGRLDRVDAGEAGQ-GVIDYKTGTPPAQKEVDAGEAVQLP 874

Query: 939 LEAAALKAG 947
             A  L+  
Sbjct: 875 TYALLLEDS 883


>gi|163839981|ref|YP_001624386.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953457|gb|ABY22972.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 1073

 Score =  205 bits (521), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 115/1019 (11%), Positives = 237/1019 (23%), Gaps = 115/1019 (11%)

Query: 34   FRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADL 93
             R    + +  A V +  P++ A   LR        +  +  P  +S      +      
Sbjct: 60   VRRVNHDDVDPAKVLLLAPSRVAAARLRDALSARLDRTVSTSP-ARSWASYAFDILRRAQ 118

Query: 94   LLSY-----NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
                      +   +S  ++ L +  L+      L                         
Sbjct: 119  AEGLVPNADRVPKLISGPEQDLFIRELLAGHALGLAP------GPQWPEELHEALLTRGF 172

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
             + +  + D I        DL  L  E     W  AA   +         L       P 
Sbjct: 173  RQEVRQLFDRIVDNGLLPSDLVELGRENNRPDWQAAAQLYREYRDL--IELKNPGCYDPA 230

Query: 209  ---GYQIALMRAEAEHLMKGTKGP--IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                    L  A  + L +  +    I++     +  A   L+  +     G  +L    
Sbjct: 231  GIVRAASELFDANPDWLARERERHSLILVDDLQETGRAVHGLLRRIGT---GQEMLATAC 287

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +         +       +     S  +L   L                    
Sbjct: 288  PDTVVQGFRGARPDRVGLVRDELGANEAVLSSSHRLNQPLAAAW---------------- 331

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL- 382
              +  +          R  D   ++     +    V+ +   ++ ++   +A  +     
Sbjct: 332  LRIAERIAQSKGGHKARQLDFPADEPTVGPESEQVVSGVVVGSDVQQRRFVAERIMHFHV 391

Query: 383  --DENKKKSALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFK 439
              +   +  A+I             L   GI + ISA   P+        L         
Sbjct: 392  DRERPLRDMAVIVRTGAQVAAFGRYLVSHGIPVRISAAETPVRDEPAVRPLLLAYRVAVT 451

Query: 440  L--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                D      L+   +      +    R    L       N       +L    L R A
Sbjct: 452  PELLDAELAVDLLTSRIGGLSSVQI---RRVRKLLRAEEIANGGVRGSDELLVEGLQRPA 508

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                        +R++      +  + +      + L         +          +  
Sbjct: 509  QLAALGVDGRAAARMATVLAAGSQAMTEPGANPQSVLWALWDATGLST---------EWA 559

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               L+                   +       +                 ++ + +  +T
Sbjct: 560  TAALREDANGSRADRDLDAMMALFQAAERYVEQSPAASPEAFVEY-----LLNQELPMDT 614

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            +  + E    + ++    +    +  +I+ GL EGVWP N  +   L      ++    A
Sbjct: 615  LAARAESGDAVEVMTPASAAGRQWPVVIVAGLQEGVWPNNRLRGELLGSQYLVEVLELGA 674

Query: 678  EKYIGQAAH-------------DFEMANGTRHLIYTRSLRENNIP--------------- 709
                  AA                   +     +    +   +                 
Sbjct: 675  ASARRLAAVQRMRDIRYDELRSFATAISRASERLICVGVSSEDEQPSGFLDLVDPWPIED 734

Query: 710  ---------TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
                         + L+ L+            +R           +         R    
Sbjct: 735  NDGLRPLTDVRRPKTLRALVAELRQANERGANERDSDDRAEQPAAEAARVLAELARNAVP 794

Query: 761  PPLEAQPRTYSFSEIKQLIND--------PYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                +     +       I          P  + A     L +         + D     
Sbjct: 795  GADPSSWWGLAPLSSTDPILPVDAVVPVSPSKIEAVHESALSWFLQAAGGEAQLDLARSL 854

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
              +I  + +     N  E+   +     +    EN              ++      +  
Sbjct: 855  GTLIHGIAQDLPAGNAEELLAELANRWPALGLPENWETAAQ---LRRAERMLRKLAGYLR 911

Query: 873  KIQSSIEK-IFVNIPAKMAIESIGI-HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETA 929
             I +   + + V     + +    I  L G  DR++L   G + + D KTG   P     
Sbjct: 912  LISAQGHELVGVEQGFGIEVPGARIAALKGIVDRLELTAEGTLIVVDLKTGKNKPTAAQV 971

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
            ++   PQL     A K G+F QI     V     ++L                   + +
Sbjct: 972  EQH--PQLGAYQVAAKHGAFEQIAPTASVGGAALVQLGDGTDKYDPQFQAPVDPEHDWA 1028


>gi|120402800|ref|YP_952629.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
 gi|119955618|gb|ABM12623.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
          Length = 1038

 Score =  205 bits (521), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 114/1043 (10%), Positives = 263/1043 (25%), Gaps = 113/1043 (10%)

Query: 27   NGTLVENFRYDPLNPLLLASVTIYVPTKR----AIQELRSEFIEITGKKSTILPIIKSLG 82
            +  LV+             SV +   + R    A   + +  +    + +   P+++++ 
Sbjct: 33   SSLLVDTAAAHIAAGCDPESVLLLTGSSRLSAQARAAITTALLGAGARSAVREPLVRTVH 92

Query: 83   DVVEEKFTADLLLSYNLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                         + +  P  +++ ++   +  L+            D  P         
Sbjct: 93   SYAFAVLRLAAQRNGSPPPRLITSAEQDGIIRELLAGDVED-----GDASPVRWPERLRP 147

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
              + +  A  L D++            L  +        W  A  F +   +        
Sbjct: 148  ALSTVGFATELRDLMARCSERGVDPLALQRIGRAAGRPEWQAAGRFAQAYEQ-------- 199

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                  V    A +   A        G   + G+     AT   +          +++  
Sbjct: 200  ------VMLLRAAVGMAAPQATVPALGAAELVGAALEAFATDADLLAAERARVQLLLVDD 253

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                 P A        +    +          +        L         L        
Sbjct: 254  AQHLDPQAARLVEVLATGAELAVIAGDPHQTVFGYRGADPALLRGEGPALTLTRSHRCAN 313

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
              +  I         ++                    V +  A +   E+  IA ALR +
Sbjct: 314  PVADAIGAVGRRLPGAEATREF-------TGSDAPGSVTVQIAASPHAESALIADALRRA 366

Query: 382  LDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNA 436
               +     + + ++ +   +   +   LT  G+ +D+     PL+       L ++L A
Sbjct: 367  HLVDGVPWSQMAVIVRSVPRMGAALGRALTAAGVPLDLPQPEVPLAEQPAVRALLTVLEA 426

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                 D      LV  P+ +         R           G  +   +  L+       
Sbjct: 427  TADGLDGERALALVTGPIGRVDPISLRQLRRALRRAAPESPGGFSDLLVDALQRDTPALA 486

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
              Q                       +   +             +++       S   K 
Sbjct: 487  DGQAR-----------------ALRRVCAVLTAARRSAREGSDPRHTLWQAWHRSGLQKR 529

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
             +   +       +   +L        ++  +            +    +D IT L    
Sbjct: 530  WLAASERGGPAGAQADRDLDAVTAMFDVAEQYVARTAGA-----SLRGLVDHITALALPP 584

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---- 672
              + +      + +L    +    ++ ++L G+ EG+WP  + +   L+     D+    
Sbjct: 585  ARRDEAAP-DAVALLSAHSALGHEWEFVVLAGVQEGLWPNVSPRGGVLATQQLVDVIDGV 643

Query: 673  ---NLKTAEKYIGQAAHDFEMAN----GTRHLIYTRSLRENNIPTI--ASRWLQRLLVLG 723
                  T        A ++ +        R  +   ++  +        S +   L  L 
Sbjct: 644  CAPGQHTLSSRAPLLAEEWRLLIAAMGRARSRLLVTAVDSDCGDDAMLPSSFCHELAALA 703

Query: 724  -GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ--LIN 780
                       R    L  +  +                              +      
Sbjct: 704  TEPQSQPAPPVRAPRVLAPSALVGRLRSVVCAAPGAVDDVERDCAAAQLARLAEAGVHGA 763

Query: 781  DPYAVYARRILKLDFIPHFKKD----PDRTDRGTLFHNIITELIKKRINKNTPEINHLM- 835
            DP + Y  R L          +       +    L    +  L+++       ++   + 
Sbjct: 764  DPASWYGSRELSSAEPLWEDGEQVVTLSPSTLQMLSDCPLRWLLERHGGSRGRDVRSTLG 823

Query: 836  --------------------KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
                                 + +      +      +   R    ++  +FL   E  +
Sbjct: 824  SLVHALVSESGRTESQLLNGLEKVWEELPFDAQWYSDN--ERVRHLEMLSTFLRWREGTR 881

Query: 876  SSIEKIFVNIPAKMAIESIG-----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
              + ++   I     I +       + L G  DR++    G + + D KTG +P  +   
Sbjct: 882  GELTEVGTEIEVDGQIAAPDGELPAVRLRGRLDRLERDSEGRLVVIDLKTGKSPVSKDDA 941

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
            +    QL++   A+ AG  +  D      L Y+    K      T   +     +   + 
Sbjct: 942  QSHA-QLAMYQLAVAAGLLADGDEPGGGRLVYL---GKTTGGGATERHQDALTPDGRAEW 997

Query: 991  LKNLIEIVTLLQNGEQPFISHLR 1013
             + +       Q  +  F + + 
Sbjct: 998  DEQVHRAAAATQGPQ--FTARVN 1018


>gi|317484426|ref|ZP_07943340.1| endonuclease [Bilophila wadsworthia 3_1_6]
 gi|316924314|gb|EFV45486.1| endonuclease [Bilophila wadsworthia 3_1_6]
          Length = 1110

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 150/1133 (13%), Positives = 293/1133 (25%), Gaps = 152/1133 (13%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
               P    +   + F   +   ++  T  +             +  +     R  + LR 
Sbjct: 2    TPSPPFRIVPWDTDFLDALKNGVMKATRGQP-----------GNAVVVFMHDRPRRYLRE 50

Query: 63   EFIEITG-KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
             F       K  ++P + +  ++              L      + ++  L+R +     
Sbjct: 51   RFRYAPDVPKPCLIPRMFTEREL---MAAFRQEQHQKLRREAGKLDQIALLSRCVRELAE 107

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
               ++   L            A        LA++++   T+    ED+      +   + 
Sbjct: 108  PDTELCMQLAKT-------DDAGFFPWGVRLAELLEECFTQGLTPEDMLY-TEGEVAPFG 159

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE---------HLMKGTKGPIII 232
                  L      + + L+E + ++P      +  A  E                  I++
Sbjct: 160  AALLGSLGKIFHRYRDALIESDLTTPGFDAFVVASALEEGTDGDDLPPLPDFLAGRAILL 219

Query: 233  AGSTGSIPATARLMSTVANH-------------PNGAIVLPGLDCHIPTAIWNTITEKST 279
            AG          L   +  H              NG       +     A W   T  + 
Sbjct: 220  AGFGMLTGTENTLFRYLWRHGAQVFLHVDPALAENGQGHWACTEQSNWIADWKADTVLAC 279

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD---T 336
                          Y L   LD L     +++R   ++  +  RS     S LP     T
Sbjct: 280  PSPGKKPKIHYFAGYDLHSQLDALRGDLIELERKDRLAAALKARSTTQQLSLLPSSENGT 339

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--------- 387
            +             N     S V                   R       +         
Sbjct: 340  ASTLPETSASGNADNKDSITSKVLGGRGKGGPGGKGRGKPLFRRVPSPFPRWARPNPAPI 399

Query: 388  -----KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL-- 440
                   A+  A       V   L R   + +IS G PL  +L   +L ++L A  +   
Sbjct: 400  PTSQLDIAVALAHSGALLPVLHHLPR--KDCNISLGYPLERSLLFRLLETVLEARNRRQP 457

Query: 441  ---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                 +  +A LV+HP  +         R         LR      D   +         
Sbjct: 458  NGTTHWKTLADLVRHPYLRLLEANGISLRDIFQNMETRLRNGSRHADAHAV-------AE 510

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
               ++         ++E    +  LL   +   +       T          + D   + 
Sbjct: 511  GAADDFFAASSLPNVAEAMPAIRELLNRILRDTVDTWARVHTLGGLADALSGLCDTLLVY 570

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI-----DIITRL 612
             +          +      F  + + L  L  ++I                    ++  L
Sbjct: 571  GSGNDEDGAGNGKADIWSRFPIDAECLFRLMQRVIPALKDNGMADTPLPWPLMQAMLLEL 630

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            +  E V  + +  + L +LG LE+RLL F  + L  + +   P    ++P L   +++ L
Sbjct: 631  VRAERVPFEADPLTGLQVLGMLETRLLRFSRVFLVDVTDDRLPGAPIRSPLLPDSLRALL 690

Query: 673  NLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLREN-----NIPTIASRWLQRLLVLGGTD 726
             L         AA+ F         +              +     SR ++ L+      
Sbjct: 691  GLPDTRNREQLAAYTFHRLIAGADEVWLYWQEGVETSGLFDGKKQRSRLVEELIWQEEQA 750

Query: 727  FFDNLKKRGQCYLDWT---RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                LK   +         R      K              +     S + +   +  P 
Sbjct: 751  RGQRLKPGREPLRTAALDVRPPVRVRKVVPKTPAIREQIAASLKHPLSATRLDAYLTCPL 810

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN------------KNTPEI 831
              Y  R+  +  I    +D D    G L HN++ +     +             +     
Sbjct: 811  RYYYERLCAIAPIDEVNEDDDPAAVGVLLHNVLRDFYAPAVGKTVRRDAQSGDPELPFLD 870

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI---FVNIPAK 888
               ++ +  +  +   L   +      +        L    + Q    ++        A+
Sbjct: 871  EKALRALFRTALDASGLEAALPPESAAMLSVTGPERLGMFLRAQPEQTEVLSLEEEYDAE 930

Query: 889  MAIESIGIHLTGFADRIDLLK--------SGFVDITDYKTGDNP---------------- 924
            + +      LTG  DR+D  +             I DYKTG                   
Sbjct: 931  IRVGGRIRRLTGNLDRVDWREQEDPEGAIDEGAVILDYKTGRIKALRPDIWADDAFWDAL 990

Query: 925  -KKETAQKLIDP-----------------QLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
              ++ A+   +P                 QL           + Q   + V +  ++ L 
Sbjct: 991  DPEKAAEAASEPDPEHDFLPIMAQRIPTVQLLYYCYL-----YGQATGKPVLDAAFVALG 1045

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
            +      +          E +   +  LI  + L       F        +  
Sbjct: 1046 EDGGERPLFGKGMTIEERERALSLIPRLIGFILLHMELCPEFRPREGAHCRWC 1098


>gi|283795556|ref|ZP_06344709.1| putative ATP-dependent nuclease [Clostridium sp. M62/1]
 gi|291077225|gb|EFE14589.1| putative ATP-dependent nuclease [Clostridium sp. M62/1]
          Length = 1184

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 111/1009 (11%), Positives = 260/1009 (25%), Gaps = 140/1009 (13%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                  +     L+      + ++ + + L ++    + +L      L            
Sbjct: 66   SFERLAYRIFEELAVETPAVLDDMGKSMVLRKVAAGRKKELRLFGSHLDKS--------- 116

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                     L  ++          E L  +               +    + + E   + 
Sbjct: 117  ----GFIGELKSMMSEFFQYGITGEALKEMAEGTQSAMLRQKLSDMSELYEGFREYTKDR 172

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
              +      + ++              + + G TG  P   RL+  +  +     V   +
Sbjct: 173  FIA--KEEILDILCRVIPRSELIKDSVVTLDGYTGFTPVQYRLLELLLTYCRQVTVTITM 230

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV------KRLGNV 316
            +                         S+H    L  L       R +             
Sbjct: 231  NPEENPY--------REKPIQHLFHLSSHTVCRLTDLAASSGAGRTEDILLKGDCPRFRE 282

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENK------IPNIQKCFSDVALIEADNEREE 370
            S E+      + +     +  + +  +    +              S + L +A+N   E
Sbjct: 283  SPELSKIERELFRYGRRGEQKEGKQEEGKRKEEKQNQTGCGAPHRKSGLILHQAENPIRE 342

Query: 371  AISIAIALRMSLDENK---KKSALIT-ADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
               +   +   + +     +  A++T A  + +  +  +     I   + +   +     
Sbjct: 343  IQFVCAQIERLVKKEGYRYRDIAVVTGALSDYSGELTRQFQENKIPCFLDSKKNILGNPM 402

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              +L + +  + +   + ++   +K  +A     +         LE          Y   
Sbjct: 403  VELLRASMETLTEDFSYESVFRYLKTGMAVEDVEKLS------RLENYVKALGIRGYKRW 456

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            + +   + R     N   +  ++ ++    + L  +  D                     
Sbjct: 457  NSRWERVYRDGELLNLDELNEFREQIVAPFRPLREVFSDRSSSVREMTAALVHFLEEIHA 516

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
               + +W K      +              + +    +  LF ++         +  E+ 
Sbjct: 517  EEKLGEWEKRFSEMGEA--------ELEKEYSQIYGLVMELFDRVAALLGDEVVSRREYA 568

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             I+    +   V         +       +RL +   L   G+N+G+ P    +   L+ 
Sbjct: 569  QILDAGFEEIKVGLIPAVVDRVVAGDLTRTRLSHIKALFFVGVNDGIVPSAVRRGGILTE 628

Query: 667  VMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRS-LRENNIPTIASRWLQ 717
              +  L         TA +          +     +  L  T S           S  + 
Sbjct: 629  AERRLLKEKGVELAPTAREEGFLERLYLYLVMTKPSDTLFLTWSQTSAAGKGLRPSSLIG 688

Query: 718  R---LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------ 768
            +   L         D  ++         R L    ++      +P      +        
Sbjct: 689  QVKSLFPELTETRSDEFEEAAWSLPAGRRALIGGLRERSASSSQPKFLELYRRFYTDSGY 748

Query: 769  ---------------------------------TYSFSEIKQLINDPYAVYARRILKLDF 795
                                               S + +++     YA +    L+L  
Sbjct: 749  REMTRRLVEASFCSYEDRGIGRTAAGRLYSPILRGSVTRMERYAACAYAHFLNFGLELRE 808

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFEKEN- 847
                + +    D G +FH+ I    K    +          +   L+ + + +   +   
Sbjct: 809  RR--EYELAAADIGNMFHSSIDLFFKTMKEEGRSFRTLSPEDRKELVGRCVSAVTAEYGN 866

Query: 848  ---LPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIESIG 895
                    +        +I+    +   E+  +   E     +          M I    
Sbjct: 867  TVVSASSRNEYLGRRVERITDRTVWALTEQLKKGDFEPAGFELTFTPADNLKAMKIPVSR 926

Query: 896  ---IHLTGFADRIDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS 948
               +HL G  DR+DL +      V I DYKTG    +       +  QL +   A     
Sbjct: 927  TEAVHLQGRIDRMDLCEDEDKIYVKIIDYKTGQTKFELTELFYGLQMQLVVYLDAAMEKE 986

Query: 949  FSQIDCRKV--ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              +   ++V  A +FY  +      D +    +    +E  E+ L+ L 
Sbjct: 987  QRKHPDKQVVPAGIFYYNIA-----DPMVEKSEDMDEEETQEEILRALR 1030


>gi|295095006|emb|CBK84097.1| ATP-dependent nuclease, subunit B [Coprococcus sp. ART55/1]
          Length = 1234

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 101/913 (11%), Positives = 229/913 (25%), Gaps = 133/913 (14%)

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
           +     +  ++  +       + + A +               +++  + + E      +
Sbjct: 116 MGFIDEMKSMMSELFQYAVDRDSIDAVMDKLDKDSLVYRKMHDIRLIYERFEE-YNRDGS 174

Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                  I L+    +         + + G TG  P    L+  +         +  +D 
Sbjct: 175 YIVAEQLIELLAECVDRSDMLAHSHLYLDGFTGFTPVQMELIRKLMTRVESMTFVFTIDA 234

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                    I                  Q  +        +  ++   + +       R 
Sbjct: 235 SQ-------IGFTKPKEYELFRLTKETVQALVR-------MAGDEHVDILDNVVMCQNRR 280

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
               +             ++       +     D+ ++  D   +EA  IA  +R  + +
Sbjct: 281 PYRFE---KSMELAGLEANLFRYPHGRVAGDDGDIHVVAVDRAADEAEYIAGRIRELVRD 337

Query: 385 NK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                K  A++  D +++AR  +  +  + I + I A + L     S  + + L  +   
Sbjct: 338 KGYRYKDIAVVAGDLQDVARYYRQAMDEYDIPVFIDANVSLKGDPCSDTIRAFLGVMTDN 397

Query: 441 NDFMAIATLVKHPLAKFGFPEKY------LSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
             F ++  L+K  +      +        L R              +           + 
Sbjct: 398 FSFDSVFRLLKSGMTGVDQDDIERMENYVLLRNLRGYRSWTKEITDDRNPDYAADMESIR 457

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               +             S   K       + +   +  L      ++            
Sbjct: 458 AQIMELFPDKCIDVWKPTSPGSKNTVRTYTESLYNFLAQLDVCGKLESHKKVLYE----- 512

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                        + R      +      + +LF K+       K    E+  I+   I 
Sbjct: 513 -------------QERWDEGDAYGRIFDKVVALFEKMEAIIGDEKLTVKEYAGILDAGIA 559

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-- 672
              +         + +     SRL +   L + G+NEG+ PK   K   LS   +  L  
Sbjct: 560 DMEIGIVPPTIDRVVVGDMTRSRLNHIKVLFMAGVNEGIIPKPAKKGRILSGADRQSLEN 619

Query: 673 ---NLKTAEKYIGQ--AAHDFEMANGTRHLI--YTRSLRENNIPTIASRWLQRLLVLGGT 725
               L  ++K        + +        +I    R + E+      S  + R+  +   
Sbjct: 620 CGIELAPSDKTNAYIEQFYIYTTLTKASDMIYVLYRKIGEDLKSMKPSYLIDRIKNIFPD 679

Query: 726 DFFDNLKKRGQCYLDWTRKLD---------YTTKQPHYKR-------------------- 756
              +     GQ        L             +     R                    
Sbjct: 680 IRTEEYDVDGQMPETAAGALRYIIRHSDDVEAGETLDAVRKLLSKMGYGRQLRSINFGQN 739

Query: 757 ---------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                    P     +  +    S S++++     +  +    L L             +
Sbjct: 740 YVNSSKNLSPDTVRLIYGENLVESVSKLERYAECQFKYFLTYGLSLRERET--YRIGAAN 797

Query: 808 RGTLFHNIITE---LIKKRIN-----KNTPEINHLMKQIIDSHFEKENLP----PHIDII 855
            G + H+ + +    ++   +      +  E+     +  +   E E  P          
Sbjct: 798 VGNILHSTMEKIFSFVRMFRDNDWVHLDEAELEQKAVKFANESAEDEAGPYFEDSSRAAY 857

Query: 856 WRHLFHKISHSFLEHEEK--IQSSIEKIFVNIPAKMA-----IE--------SIGIHLTG 900
            + L   ++               ++          +     I+         + + L G
Sbjct: 858 MKKLLADVASRTARTLRTFIRCGEMDPENFERRFNTSENADNIDRYIFNLPNGLTMSLKG 917

Query: 901 FADRIDL---LKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAAL------KAGSFS 950
             DRID     +  +  I DYK+       +     +  QL    A        +     
Sbjct: 918 VIDRIDEFTDDRDAYFKIIDYKSSDKKLDIDKVLGGLQMQLVTYGAIACELEKRRMAQLG 977

Query: 951 QIDCRKVANLFYI 963
           +     V  L Y 
Sbjct: 978 RPGGIHVGGLLYY 990


>gi|296332486|ref|ZP_06874947.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus subtilis
            subsp. spizizenii ATCC 6633]
 gi|305673767|ref|YP_003865439.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus subtilis
            subsp. spizizenii str. W23]
 gi|296150404|gb|EFG91292.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus subtilis
            subsp. spizizenii ATCC 6633]
 gi|305412011|gb|ADM37130.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus subtilis
            subsp. spizizenii str. W23]
          Length = 1166

 Score =  204 bits (518), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 122/1040 (11%), Positives = 271/1040 (26%), Gaps = 149/1040 (14%)

Query: 58   QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
              L   E  +       I   + S   +          +S    P +++    + L +LI
Sbjct: 44   TFLMEYELAKTPDMGGMIRAQVFSFSRLAWRVLQHTGGMSR---PFLTSTGVQMLLRKLI 100

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE- 175
               + +               +    ++       +  ++   +    + ED+  +    
Sbjct: 101  EEHKQE-------------FKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMAESG 147

Query: 176  ---KYGMWWLLA--ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
               +Y    +L+     L I  +   + L +          + L+              I
Sbjct: 148  TASEYRGERVLSEKLHDLSILYQQMEKSLADQYLH--SEDYLTLLAEHIPLAEDIKGAHI 205

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
             + G     P   R++  +  H          D        + +        +       
Sbjct: 206  YVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTY------ 259

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
               Y L +    L++     +  G              +                     
Sbjct: 260  ---YRLHQKAKELNLDITYKELSG-------------IERHTQTPELAHLEAQYEARPAI 303

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LEL 406
               +      +++A N R E   IA  +   + E     K  A++       + +     
Sbjct: 304  PYAEKQEAFTVMQAANRRAELEGIAREIHTLVREKGYRYKDVAILARQPEDYKDMVKEVF 363

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLS 465
              + I   I     +        + S ++ +     + A+   VK  L      P+  + 
Sbjct: 364  ADYEIPYFIDGKASMLNHPLIEFIRSSIDVLKGNWRYEAVFRCVKTELLFPLNEPKTKVR 423

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
               + LE   +                  R  +  ++      +  +     +    +V 
Sbjct: 424  EQVDQLENYCIAYGIKGDRWTKGDRFHYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVP 483

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH--RKLPNLWFEEEGKT 583
             + Q    +   KT +          + T + +   Q     E   R +     ++    
Sbjct: 484  PLFQFQKRMKKAKTVQEKAEALYRYLEETDVPLKLDQERQRAEEDGRIIEAQQHQQAWDA 543

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            +  L  + +E     + +   +  ++    +  T          +F+     SR+     
Sbjct: 544  VIQLLEEFVEMMGDDEISLDLFQQMMEAGAESLTFSLIPPALDQVFVGNMDLSRMYGTSC 603

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR-- 695
              + G N+GV P    +N  LS   +       + L +  +      H    MA  +   
Sbjct: 604  TFVLGANDGVLPARPDENGVLSDDDREWLKTIGIELSSGGRERLLDEHFLIYMAFSSPSD 663

Query: 696  HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLD-------------- 740
             L  +  + +    T+  S  ++RL  L        L    +   D              
Sbjct: 664  RLYVSYPIADAEGKTLLPSIVIKRLEELFPQHKERLLTNEPEQVSDEEQLMYVVNKSVAQ 723

Query: 741  ---------WTRKLDYTTKQ----------------------------PHYKRPKPFPPL 763
                     WTR+ D +                                          L
Sbjct: 724  SFTASQLRLWTREYDISDVWWSTYNVLMSEPDRLQSKKLFSSLFFRNEVKQLERSVSRQL 783

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
              +    S S ++     P++ +A   L L     F    +  D G LFH+ +  +  + 
Sbjct: 784  YGERIQGSVSRMETFNACPFSHFASHGLHLKERQFF--KLEAPDIGQLFHSSLKLISDRL 841

Query: 824  INKNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEH 870
              +     +             ++++     ++  L  +     +    KI      +  
Sbjct: 842  REQKMNWRDLTKEQCELFSYDAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILS 901

Query: 871  EEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITD 917
            E    S    I + +    K  +  +   L         G  DR+D  +S     + I D
Sbjct: 902  EHAKASGFVPIGLELGFGGKGPLPPLTFKLKNGCTMELVGRIDRVDKAESSKGLLLRIVD 961

Query: 918  YKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
            YK+             +  Q+      ++   +         A + Y  +      D + 
Sbjct: 962  YKSSDKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMRATPAGVLYFHI-----HDPMI 1016

Query: 976  NDKKKYSADELSEKSLKNLI 995
                    DE+ ++  K   
Sbjct: 1017 QSNLPLGLDEIEQEIFKKFK 1036


>gi|194014167|ref|ZP_03052784.1| ATP-dependent nuclease subunit B [Bacillus pumilus ATCC 7061]
 gi|194013193|gb|EDW22758.1| ATP-dependent nuclease subunit B [Bacillus pumilus ATCC 7061]
          Length = 1169

 Score =  204 bits (518), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 112/1075 (10%), Positives = 280/1075 (26%), Gaps = 153/1075 (14%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSL 81
             A+L   + E  R DPL P     +   VP +  +  L   E  + +     I   + S 
Sbjct: 16   TAILEE-IKEQLRLDPLGPP----IIFLVPDQ--MTFLMEYELAKTSEAGGMIRAKVFSF 68

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
              +           +           R    +  I +   K+ +  KD +      +   
Sbjct: 69   TRLAWSILQQTGGAN-----------RQFVTSTGIQMLLRKVIEEQKDKFK-----VFKK 112

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALK----NEKYGMWWLLA--ADFLKIASKYW 195
             ++     + +   +   +      ED+  +     + +Y      A     L +  +  
Sbjct: 113  ASDKPGFVEQIEKTMAEFKRYCMLPEDIEKISASSMHSEYTEERRAAEKLHDLHVLYQQM 172

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             + L +          + L+  +     +     I I G     P    ++  +  +   
Sbjct: 173  EQHLQDEYVH--SEDYLTLLSQQIPSAEEIKGAHIYIDGFYQFTPQQLLVIEQLLLYAAK 230

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
                  +D        N +        +          + L +L         +      
Sbjct: 231  ITAAFTVDRSYHDRQPNELDLFRMTGKTY---------FQLYQLAKECGADISENIF--- 278

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                   R+     +              ++      Q+    + + ++ N+R E   +A
Sbjct: 279  ------ERNHRHLYTPDLAYLEHQYEHRPVQP----YQENTPHLTVSKSANKRAEIEGVA 328

Query: 376  IALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILT 431
              +   + E     +  +++    +  +         + I   I     +       ++ 
Sbjct: 329  RDILDLVREKGLRLRDISIVARHVDDYKDTLKEVFRDYDIPFFIDGNESMQYHPLIELIR 388

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            S L+ I     + A+   VK          +       + LE   +          +   
Sbjct: 389  SSLDVIKGNWRYEAVFRCVKTEFLFPLEITKNKAREQADQLENYCIAYGVKGERWTNGSR 448

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                R  +   +      +  + +   ++   +   + Q    L   +  ++        
Sbjct: 449  FHYRRFQSLDEDFGQTDQEIEMEQMLNDVKEWIASPLYQLQKRLKKAQKVRDMVEAVYVF 508

Query: 551  SDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             +  ++       +    +  R    +   +    +  L  + ++     + +   +  +
Sbjct: 509  LEEIQVPDKLEKARLEAEEAGRLAEAMQHGQVWDAVIQLMDEFVDMLGDEELSFPLFQQM 568

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            I   +              +FI     SR+       + G+N+GV P   +    LS   
Sbjct: 569  IDTGLASLKFALIPPSLDQVFIGSMDLSRMYQVKCTFIIGVNDGVIPARPSDESVLSEDD 628

Query: 669  Q-------SDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRE-NNIPTIASRWLQRL 719
            +       ++L     E+ + +    ++  +  + HL  + +  +      + S  ++  
Sbjct: 629  REWLKRAGAELAETGKERLLDEQFLIYQALSSPSHHLYLSYAASDAEGRSLLPSTLIKYC 688

Query: 720  LVLGG-------------------------------------TDFFDNLKKRGQCYLDWT 742
              L                                         + +     G  +  + 
Sbjct: 689  QELMPNHQQALYVLDPEQLEDDEQLKFVANEHVSLSYTISQLQQWLNQYPISGVWWSVYN 748

Query: 743  RKLDYTTKQ--------------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
              +    +                   +P     L       S S +++     ++ +A 
Sbjct: 749  YLMTSPHRDVSKNIMSSLFFTNRAKPLKPNVTKELYGDHIQGSVSRMEKFNACAFSHFAS 808

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-----------INHLMKQ 837
              LKL          +  D G LFH+ +  +    + +                 H ++Q
Sbjct: 809  HGLKLK--DRQFYKLEAPDIGQLFHSALKHISDTLVEQKKDWKNLTKEDCVTYSRHAIEQ 866

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEHEEKIQSSIEKIFVNIPAKMAIESIG 895
            +     ++  L  +     +    KI      +  E    S    + + +          
Sbjct: 867  LAPRLQKEILLSSNRHAYIKEKLQKILIRVSSILSEHAKLSGFSPVGLELGFGGQGPLPP 926

Query: 896  IH----------LTGFADRIDLLKSGF----VDITDYKTGDNP-KKETAQKLIDPQLSLE 940
                        L G  DR+D    G     + I DYK+ +           +  Q+   
Sbjct: 927  FTFQLKNGCTMELVGRIDRVDK-AEGSKGLLLRIVDYKSSEKGLDLAEVYYGLALQMLTY 985

Query: 941  AAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
                   S   +      A + Y  +        I   + +   +   +  +K L
Sbjct: 986  LDLTITYSKEWLGVEATPAGILYFHIHDPLIQAPIPLAEDEIEQEIFKKFKMKGL 1040


>gi|329939646|ref|ZP_08288947.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329301216|gb|EGG45111.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 1158

 Score =  204 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 127/1097 (11%), Positives = 263/1097 (23%), Gaps = 143/1097 (13%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE+             + +   ++RA  ELR       G  +   P   +        
Sbjct: 66   TLVESVAARIARGTDPERILVLTFSRRAAVELRDRLALRIG--AERAPRATTFHSFGYAL 123

Query: 89   FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A  D  L       +S  ++ + +  L+             L          +     
Sbjct: 124  VRAHQDSGLFVEPLRLLSGPEQDVTVRGLLAGQPELER---LGLAHVRWPEDLRACLTTR 180

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++            L A         WL A+ FL         + V   A  
Sbjct: 181  GFADEVRAVLARSRELGLDPAALEAFARRIGRPDWLAASAFLAEYLDVLDLQGVVDYAEL 240

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 +   R E    +      + +     + PA  RL+  +A    G  ++   D   
Sbjct: 241  VHRAVLLARRPEVAARLAAQYDAVYVDEYQDTDPAQVRLLHALAG--GGRTLVAFGDPDQ 298

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +                 +                +   V+ L             
Sbjct: 299  SIYAFRGADVGGILEFPDAFARADG--------------RPAPVRVLTASRRSGAALLAA 344

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
                      + +    +  ++     +    V +        E  +IA  LR +  E  
Sbjct: 345  TRLLTRRMPLTRLPAEKVRAHRELTAAREGGRVEVRTYPTPGTELDNIADILRRAHLEDG 404

Query: 385  --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFK-- 439
                + + L+ A       V+  LT  G+ +D+     PL      + L + L A+ +  
Sbjct: 405  VPWGEMAVLVRAGARGVPGVRRALTAAGVPLDVDGDDLPLRHEPAVAPLLTALRAVARAE 464

Query: 440  --------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE------------------- 472
                      D    A        +    E      ++  +                   
Sbjct: 465  ATEGGAAEGPDAEDAAEEHDEHDERDEHDEHDERDERDERDEQDEQGGGDAHDGDDTKDD 524

Query: 473  ----------LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                       +       +  +  + +  L R+                   D  LA  
Sbjct: 525  ANTGTADCWLDIETALALLASPLAGMDAADLRRLGRALREEERAAGSPVPPPSDALLARA 584

Query: 523  LVDHIL-------QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            L +                      + +           +               +  + 
Sbjct: 585  LAEPERLVAHDPSYARGAQRLGALLRRTRECLADGGTAEEALWELWNGTPWPARLERSSR 644

Query: 576  WFEEEGKTLSSLFS---------KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                 G+                   E     +       +I  + I  +T+  +  ++ 
Sbjct: 645  RGGAAGRNADRDLDAVCALFATAARAEERVGGRGALNFLEEIEAQDIAADTLTRRAVRAD 704

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA- 685
             + ++    S+ L +  ++L G+ EG+WP    +   L         L          A 
Sbjct: 705  AVRLMTAHRSKGLEWHLVVLAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSQGALLAE 764

Query: 686  ---HDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                 +  A   +  L+ T      +     SR+L  L V           +R       
Sbjct: 765  ERRLFYVAATRAKERLVVTAVKAPADDGDQPSRFLTELGV--EPKDVTGRPRRPLSVSAL 822

Query: 742  TRKLDYTTKQPHYKRPK-----------------------PFPPLEAQPRTYSFSEIKQL 778
              +L  TT  P                             P          +  +E K  
Sbjct: 823  VAELRATTVDPEASPALREAAARRLARLAALADEDGQPLVPSAHPYRWWGMFEPTESKVP 882

Query: 779  INDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
            + D     A     L                +            G + H ++ + +    
Sbjct: 883  LRDRDKPVALSGSALDQLARTCALQWFLGREVKADVPATAAQGFGNVVH-VLADEVASGR 941

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE---KIQSSIEKI 881
                 E+       + +    +                    FL+        ++    +
Sbjct: 942  TPADLEVLMERLDSVWNALAFDAPWKSAQEKAHAR--AALERFLKWHVDSGGQRAGRTPV 999

Query: 882  FVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLS 938
                   + + +    + + G  DR++    G   + D+KTG   P      +   PQL+
Sbjct: 1000 ASEQDFDVTLGAGDYEVRIRGSMDRVETDGEGRAYVVDFKTGKQAPSAAEVARH--PQLA 1057

Query: 939  LEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL--KN 993
            +   A++ G+  ++      +      + L+Q         +  K  A E  E     + 
Sbjct: 1058 VYQLAVREGAVDEVFDGTRPEPGGAELVHLRQGAARRDGGEELPKVQAQEPLEGQWVGEL 1117

Query: 994  LIEIVTLLQNGEQPFIS 1010
            L      + +      +
Sbjct: 1118 LATAAGKVLDERFSPTA 1134


>gi|239947253|ref|ZP_04699006.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
            scapularis]
 gi|239921529|gb|EER21553.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
            scapularis]
          Length = 908

 Score =  204 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 128/743 (17%), Positives = 250/743 (33%), Gaps = 97/743 (13%)

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
            P  ++  + ++ +E  N  EEA  IA           K+ A+IT +  L R     L ++
Sbjct: 200  PASKQISNGISYLEPANIYEEARQIAYI---CSRNKDKRIAIITNNNKLKRVYCNFLDKY 256

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM-------------AIATLVKHPLAK 456
               +    G  L  T  S +LTS++  +    D                I  L      +
Sbjct: 257  EDLL----GNDLRLTNISELLTSIIKILCNNFDLKLLFLLLKNPLINCPIGQLNSQSFRQ 312

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA---TQKNNTHVPHWQSRLS 513
              F  K   R       +  + +  S  + D    +   ++      ++          +
Sbjct: 313  DEFKSKSAQRTIVREHRLNSKNSPVSSFVNDSVQKLELMLSNKNRFISSPKYLLQLQFDN 372

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            E+ KE    L+D +                T    +I D         + +      +  
Sbjct: 373  EDTKEYCRNLIDILF---------------TDNPHNIPDILIAAKGIAEKLLPTIWEEEG 417

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIK-----ANAIEWIDIITRLIDGETVKPKIEKSSTL 628
             +   E    L++  S                N  ++  I + L+       K   S+++
Sbjct: 418  GVELLEFLTNLTAYLSTSFPQKRESDKYINLTNKKDFPKIFSFLLSNIKYY-KNTDSASI 476

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             I    +  L  FD +IL   N   W      +P+LS+     LN+   E      +  F
Sbjct: 477  IIGSPEDLALCGFDLIILPHFNNENWTLTAKAHPWLSKKALQILNIDYNEIAPTLYSDYF 536

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
             +    + ++   + + +    + S    +L +             G   ++ +  +   
Sbjct: 537  NLFLQNKQIVILNAKKYDGKLLVPSNLFLKLQL----KHVIPWLDHGIHTINRSNNIF-- 590

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                   R          P   S ++I+ LI +PY  YA++IL L    +  ++P  +D 
Sbjct: 591  LDPAIKSRDDKVASSTFFPAVLSVTDIETLIRNPYGFYAKKILGLRKKDNIWEEPKISDF 650

Query: 809  GTLFHNIITELIK----KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
            G   H ++ E  K    + IN N  +  + +  I +       LP +    W+      S
Sbjct: 651  GNFIHKVLEEYSKNHDKQYINLNLLDKQNALINIGNHILYSTILPNYTKKTWQIKLTAFS 710

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMA--IESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
             +F+  + + + + ++I+     ++   I    I + G ADRI++ KS  + I DYKTG 
Sbjct: 711  KAFILFDIERRKNCKEIYFETKGELQLNIAGQDIKIIGIADRIEISKSNNITILDYKTGT 770

Query: 923  NPKKETAQKLIDPQLSLEAAALKAGSF--SQIDCRKVANLFYIRLKQK------------ 968
             P ++  +  + PQL +E+  L    F  ++      +    IRL  +            
Sbjct: 771  IPTRKEIELGLSPQLIIESLMLLENGFYTARFRKLDTSEFSDIRLCSRTFVRSAGSVVNS 830

Query: 969  ----------------------FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                                     +      +   + E   +    L++++      + 
Sbjct: 831  SCLKLSESSCINKEITIAYVKITSTEPYVQITEIALSIETLNRHKAGLVKLLEHYITNKF 890

Query: 1007 PFISHLRLSEKSNIQSEYDHLAR 1029
             F  +L LS+     ++Y HL R
Sbjct: 891  -FSYNLNLSK----YNDYLHLMR 908



 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 70/190 (36%), Gaps = 32/190 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V I +P   +  EL+    +    K   LPII     ++ +K  +D          VS 
Sbjct: 20  EVQIILPNNFSCLELKKILTDKYKIK---LPIIIPFNSLISKKTDSDY---------VSK 67

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           I+ LL ++++I  +++                LP +   ++  A+ L  + + +      
Sbjct: 68  IEELLIISKIITEYKD----------------LPFNKNESLKAAEILRKLFNDLIINNID 111

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
              +  ++      +W     FL+     W E +      +   Y++ L++ E   +   
Sbjct: 112 ---IKLIEVYNNSNYWQKIYKFLEYCFLRWQEEISFTQKQTKAVYKLKLLQEEIIRIKN- 167

Query: 226 TKGPIIIAGS 235
               II+AG 
Sbjct: 168 RNKQIILAGI 177


>gi|239826205|ref|YP_002948829.1| ATP-dependent nuclease subunit B [Geobacillus sp. WCH70]
 gi|239806498|gb|ACS23563.1| ATP-dependent nuclease subunit B [Geobacillus sp. WCH70]
          Length = 1171

 Score =  204 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 127/955 (13%), Positives = 252/955 (26%), Gaps = 142/955 (14%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHA---LKNEKYGMWWLLAADF----LKIASKYWTERL 199
               K L D+I   +      + L        E+               + I  +     L
Sbjct: 123  GFIKQLHDMITECKRYCVTPQHLREHVKALTEQGKKPAEKVLADKLNDISIIYEELERSL 182

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
            +           + L+  +           I I G     P    ++  +  H     V 
Sbjct: 183  LNHYID--SEDYLRLLSEKIPQSRYLRNAEIYIDGFHQFTPQEYMVLEQLLIHCKRVTVA 240

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              +D                 +     T  T+       LL+ + I+   +        +
Sbjct: 241  LTVDGPYD-------DRLPNELHLFYLTAKTYHDIRQMALLNDVAIEETMIL-------D 286

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
               R    + + L             E       +    V + EA N R E  +IA  + 
Sbjct: 287  RNMRHQEKALAHLEAY--------YHERPAVVYSEETEAVNVYEAANRRAEIEAIAREIV 338

Query: 380  MSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              + +     +  ALI  +    R  VK     F I   +    P+       +L + + 
Sbjct: 339  HLVRDKGYRYRDIALIVRNTEDYRDLVKTIFYDFHIPYFMDEKEPMHHHPLIELLRASME 398

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSR-AKNALELVALRGNKNSYDIMDLKSLVLD 494
             I     + ++   +K  L      +    R A + LE   L          + +     
Sbjct: 399  IITSRWRYESVFRAIKTDLLFPVEEDIVALREAMDQLENYVLAYGIKGEKWTNGERW--- 455

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               T +    +       ++E+K+    L +       PL   +       G  S+ +  
Sbjct: 456  ---TYRRYQALEGLSIPQTDEEKQYEEKLNEWRDIIAAPLSKLERRMRRAKGGRSLCEAI 512

Query: 555  KLTVTCLQ---------NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
             L +  LQ             ++ R +     E+    +  L ++ +E          E+
Sbjct: 513  YLFLEELQIPRKLEKMSKEAEEQGRLMEARQHEQVWNAVIDLLNQYVEMLGDESIPVTEF 572

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
              II   +D             + I     SRL++     + G+NEG+ P    ++  L+
Sbjct: 573  AKIIETGLDRLEFSLVPPAMDQVIIAQLDRSRLIDVKCAFIIGVNEGIIPAKAKEDGLLA 632

Query: 666  RVMQSDLN------LKTAEKYIGQAAHDFEMANGTR--HLIYTRS-LRENNIPTIAS--- 713
               +  L            + +        +A  +    L  T     E       S   
Sbjct: 633  ETERELLQQFGTRVAPGGREQLFYEPFFIYLALTSPSERLYVTYPLANEEGKALSPSIII 692

Query: 714  ---------------------------------------RWLQRLLVLGGTDFFDNLKK- 733
                                                     + +L           L   
Sbjct: 693  KHLTDLFPNLQKRVCGNDPLDAPFAEQHEFVTVPRATLTYLVTQLQAWKRNYSIAPLWWD 752

Query: 734  ------RGQCYLDWTRKLDYTTKQPHYKRP---KPFPPLEAQPRTYSFSEIKQLINDPYA 784
                    Q +    RK        +   P   +    L  +    S S ++Q    P++
Sbjct: 753  VYNFYVSDQQWRSHARKAIAGVFYTNEATPLKKEISKRLYGKKIQASVSRMEQFQKCPFS 812

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHL 834
             +    L+L     F+   D  D G LFH+ +  +           +    K   +++  
Sbjct: 813  HFVSHGLRLKERAVFR--LDAPDIGQLFHSALKIISDRLREAKIDWRHLSKKQCEQLSME 870

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHL-FHKISHSF--LEHEEKIQSSIEKIFVNIPA---- 887
              + I    +++ L       +       +      +  E    SS   I + +      
Sbjct: 871  AVEQIAPLIQQQILLSSNRYYYMKRKLQNVIARTTNVLSEHAKASSFVPIGLELEFGPNG 930

Query: 888  -----KMAIESIGI-HLTGFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDPQL 937
                    +    +  L G  DR+D  +S     + + DYK+             +  Q+
Sbjct: 931  VLPPLTFRLPDGTVMELVGRIDRVDKAESSRGVLLRVIDYKSSAKTLNLTEVYYGLALQM 990

Query: 938  SLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
                  +   +   +      A + Y  +             +K    +L E+  
Sbjct: 991  LTYLDIVLTYAEQLVGKEAFPAGILYFHVHNPIIKSDQLLYDEKEVERKLLEQFK 1045


>gi|291535311|emb|CBL08423.1| ATP-dependent nuclease, subunit B [Roseburia intestinalis M50/1]
          Length = 1174

 Score =  204 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 117/949 (12%), Positives = 248/949 (26%), Gaps = 126/949 (13%)

Query: 150  KNLADIIDIIETEEKKWEDLHALKNEKYGMW-WLLAADFLKIASKYWTERLVELNASSPV 208
              +  +I  +     + + L     ++       L    +    + +TE L         
Sbjct: 115  GEVKSLISELMQYNVRPDALAEFLEKEPLGEGLRLKMQDVLTMYQGFTEYLK--GRYITA 172

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
               + L+   AE         I++   TG  P   RLM  +        V   +D     
Sbjct: 173  EEVLELLYDVAEESELLRNSVIVLDEFTGFTPIQNRLMEKLLVLAKKVSVSVTMDVREDF 232

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
                 + E       +          SL K+ +   +  E+   L              +
Sbjct: 233  YKCRGVHELFAMSKKTV--------ASLLKVAELCKVPVEEPLILPTGKQ-----RRYAN 279

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-- 386
             + L     ++        +    ++    + ++   N REE    A  +     EN   
Sbjct: 280  AADLYFMEQNLFRPGAGSYRYKAPEQSMQHIRIMSLKNPREELKFTAREIVRLTRENGYR 339

Query: 387  -KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
             +  A++T D       V     ++ I   I     +        + ++L  I     + 
Sbjct: 340  YRDIAVVTGDVQQYGNYVPEIFEQYHIPYFIDQTKNILFHPFIECIRAILEMIEYDFSYE 399

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
            ++   ++  LA     E   S  +           +       L    +DR+        
Sbjct: 400  SVFRFLRCGLAARVVTEAKNSDKEPDPAATEDLTQQPETGSHGLTEQEIDRLENYVLARG 459

Query: 505  VPHWQSRLSE----------EDKELAVLLVDHILQCITPLVTYKTNKN-----STCGNLS 549
            +                   ED      + + + +   PL+     K+      T    S
Sbjct: 460  IRGASRWSRPWTFVMPDGTLEDMARLNEIREAVYENFKPLLEAFRGKDNTVSTQTYELYS 519

Query: 550  ISDWT--KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +      +  +    N       +     +++  K +  L  K+            E+ D
Sbjct: 520  LIRRLDMEQLLKERGNFFEAHGNQARAKEYDQIYKIVMDLLDKVTSLLGDETMTIREYSD 579

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            I+    +   V      + T+ +     +RL +   L   G+N+GV PK   +   +S+ 
Sbjct: 580  ILDAGFEAAKVGIIPPGNDTVTVGDIERTRLNHVKILFFVGVNDGVVPKAGNQGGIISQF 639

Query: 668  MQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYT-RSLRENNIPTIASRWLQR 718
             +  +          A + +        +     +  L  T   +  +      S  +  
Sbjct: 640  EREKMAEYHLELAPGAREKVFIQKFYLYLNMTKPSERLYVTFCRVNSDGKALRRSYLIGT 699

Query: 719  LLVLGGTDFFD---------NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
            LL L      +                        L    +            L  +   
Sbjct: 700  LLKLFPQLAVEEPSEEETLEGALTAESALPFLMEGLTKPVEDEEAWTALLAWYLSDEGER 759

Query: 770  Y---------------------------------SFSEIKQLINDPYAVYARRILKLDFI 796
                                              S + ++Q     +A Y    L+L   
Sbjct: 760  EKVMQLFDAAFGAHKDDAISKAVTKALYGNTLENSVTRLEQFAACAFAHYLSYGLRLKER 819

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFEK---- 845
                +     D G ++H+++    K     +             L+ Q ++         
Sbjct: 820  E--LQQFASVDMGNIYHDVLERFAKGIELSDYTWFDIPEKAQEALLSQSMEDAIAGSGIG 877

Query: 846  ENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIESIG- 895
            +      +          +    +    +  +         +          +  +    
Sbjct: 878  DVFEDARNSYLLKRMEATAKRTIWALMLQVRKGKFVPSGFEVSFSRAERLDAVQFQLGED 937

Query: 896  --IHLTGFADRID--LLKSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLE---AAALKA 946
              + L G  DR+D           I DYK+G            +  QL +    A  L  
Sbjct: 938  EKMRLRGRIDRVDTYETDDKVYVKIIDYKSGNTTFSLLNFYYGLQLQLVVYMNAALELTK 997

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              +   D  + A +FY  +      D + +   + S +E+    L+ L 
Sbjct: 998  KKYKGKD-TEPAGIFYYHIT-----DPMVDADGQESEEEIRRSILEQLK 1040


>gi|144899272|emb|CAM76136.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
            MSR-1]
          Length = 316

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 109/253 (43%), Gaps = 5/253 (1%)

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
             DPY +YA+++LKL  +P    DP   D G+L H  + + +         +    +  + 
Sbjct: 2    RDPYGLYAKKVLKLKALPEIDADPGAADYGSLVHEAVEQFLLAYPQSLPDDAEAKLLAVG 61

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES--IGIH 897
            ++ F +    P +   W   F  ++     HE+K +  +  I   I   + +E       
Sbjct: 62   EAVFAQALERPGVWAFWWPRFRAVARWLAAHEKKRRPELAAIHTEIKGALEMEGPAGPFL 121

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
            L   ADR+D+LK G + + DYKTG  P  +       PQL LEAA  + G F  I    V
Sbjct: 122  LHARADRVDVLKDGTLALIDYKTGQPPSPKEVAAGYAPQLPLEAAIARFGGFDGIAPAAV 181

Query: 958  ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEK 1017
            + + Y RLK   +              +L++ +L+ L  ++    +   P+ +       
Sbjct: 182  SQMLYWRLKGGAEGGE--EKSAGADPKQLTDDALEGLYGLIAAFDDANTPYEARPHPDR- 238

Query: 1018 SNIQSEYDHLARV 1030
            +   S+Y HLARV
Sbjct: 239  APKYSDYLHLARV 251


>gi|241662729|ref|YP_002981089.1| hypothetical protein Rpic12D_1125 [Ralstonia pickettii 12D]
 gi|240864756|gb|ACS62417.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 947

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 161/1044 (15%), Positives = 302/1044 (28%), Gaps = 125/1044 (11%)

Query: 10   TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE--I 67
              AP   F      A         +R+   +     + TI VPT   I  +R        
Sbjct: 5    AFAPGPAFLSRAADA--------AWRFLDAHAQPPGTATIVVPTAAQIPGVRGALHAGAQ 56

Query: 68   TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
                  +LP I +LG      +  DL          + + RLL + + +           
Sbjct: 57   AAGTPRLLPRILTLG-----HWLLDLPPEAGSPAGRTPLSRLLAVQQALKTL-------- 103

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
                           A    +A+ L  + D +       +  H+  + +        A+ 
Sbjct: 104  ---AWLREALGAQDDAALWGVAQVLVTVSDDLSQRWLTLDAAHSGADGRADELESALAEA 160

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            L+        +L E    +     +   R  +              G+   IP   R M 
Sbjct: 161  LERTY----AQLSERFLGTESRIVLTFWRLLS--------------GAADPIPMRLRAMQ 202

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             + +   G IV           +             S       P               
Sbjct: 203  RLLDELRGPIVWMSPTDPEAVDLDFLQRAAERVPVLSIGYDWNAP--------------- 247

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                            +    ++ L     +        +     Q     + +  A   
Sbjct: 248  -------ESGASAAPSTHADFRNLLLHAWPECATPAQAADDAAAAQLPAPILRIAGAARF 300

Query: 368  REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
             +EA   A  L   L+  ++  AL+  DR +ARRV+  L R  + +    G  LSTT  +
Sbjct: 301  EDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKLSTTRAA 360

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            + L   ++ +    D  A+  L+K P           + A  A     +R +  S     
Sbjct: 361  AALMRWVDVVQGDGDTAALLDLIKSPFCLRDADAGTATPAWVAELERRVRRHNVSGGWGR 420

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
            L+ LV DR A+           +       + A L                       G+
Sbjct: 421  LRRLVTDRPASDAEGEAKVSRLADRLGVLADEAALWRRA-------------------GS 461

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              +  W  L    L  + +    +  +   +          S    T +  + +  EW  
Sbjct: 462  AKLDAWVALLAGTLDRLHMRTGLQNDDAGRQLLDWIDRLRTSIHGSTDAGARYSLTEWRA 521

Query: 608  IITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            +++ L++          +   + IL    +R+  FD +++ G ++   P    +  F S 
Sbjct: 522  LLSMLLESAVFSEPSPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPEWLFFSN 581

Query: 667  VMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQRLLVLGG 724
             ++ +L L    +   Q A D   +      ++ T         P   S WL+RL     
Sbjct: 582  DVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPHRLSGWLERLQRRL- 640

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                  ++      L   +     T  P    P   P       T S +    L   PY 
Sbjct: 641  --AVSGVRIDTSVTLPSLQTTSQPTDMPAPAAPTLVP------STLSAAAYNSLRRCPYQ 692

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDS 841
             +  R+L+L  +     + ++ D G + H I+    ++ +     +  +   L++ I D 
Sbjct: 693  FFVGRMLRLGELEEVSDELEKRDIGGILHAILHRFHRQLLETPMHDPADRLSLLQTITDE 752

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAI---ESIGIH 897
             F          + +   +  +  S+L  +   ++         +    +I   +   + 
Sbjct: 753  QFGPLLAEDGNALRFYRRWLGVMPSYLAWQAAREADGWRFEAGEVDVDTSITLSDERALR 812

Query: 898  LTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            L G  DRID+     V + DYKT       +       D QL              +   
Sbjct: 813  LRGRIDRIDVHDEHGVAVLDYKTQSQMALVRRAKTPFEDCQLPFY----------GVLDA 862

Query: 956  KVANLFYIRLKQ--KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
            +  +  ++ L    +     +         D L E+  K++  +                
Sbjct: 863  RADSGGWVSLDGEARGDKRDVALPDFTQVVDWLIEQMQKDMTALAAGAPLPAFG------ 916

Query: 1014 LSEKSNIQSEYDHLARVAEWREEY 1037
              E +        L R   W E  
Sbjct: 917  -DESACRYCAARGLCRKGYWTEGA 939


>gi|240172136|ref|ZP_04750795.1| ATP-dependent DNA helicase [Mycobacterium kansasii ATCC 12478]
          Length = 1051

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 131/1033 (12%), Positives = 262/1033 (25%), Gaps = 140/1033 (13%)

Query: 55   RAIQELRSEFIEIT----GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL 110
            RA   L S  +  +    G+ +   P+++++          +   +    P      RLL
Sbjct: 64   RARSALTSALLRSSRIGSGRSAVREPLVRTVHGYAYALLRRNAERTGEGPP------RLL 117

Query: 111  ELARLILIWRNKLPDIIKDLYPE--SPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
              A    I R  L   ++D      +         +    A  L +++           D
Sbjct: 118  TSAEQDAIIRELLAGDLEDAAASQSAWPQHLWPALSTAGFANELRNLLARCFERGVDPWD 177

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
            L  L        W+ A  F +   +              V    +     A        G
Sbjct: 178  LERLGRRCGHPEWIAAGRFARQYEQ--------------VMLLRSAAGMAAPQATARALG 223

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
               + G+     A    +          +++       P A        +    +     
Sbjct: 224  AAELVGAALDAFAVDPGLLAAERARVRLLLVDDAQQLDPQAARLVRALVAGTERAVVAGD 283

Query: 289  STHPQYSLA----KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                 +         L    +    +  L          +  +S                
Sbjct: 284  PNQAVFGFRGGEPAGLLGGAVDGGRLVTLTVSHRCAPAVARAVSGITRRLPGG------S 337

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLAR 400
               +I    +    VA+  A +   EA  IA  LR +   +     + + ++ +    A 
Sbjct: 338  AGKQIEGTGEQDGSVAVRLATSAHAEAAMIADTLRRAHVIDGVPWSQMAVIVRSVPRAAA 397

Query: 401  RVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
            R+   L   G+ + + + G  LS     + L ++L A            L+  P+ +   
Sbjct: 398  RLPRALAAAGVPVAMPTMGGSLSQEPAPAALLTVLAATADGLTGERALALLTGPIGRVDP 457

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                  R          RG            L        +++      Q+      + +
Sbjct: 458  VTLRQLRRT------LQRGRSGDSPGDFGDVLAQTLSPEAESHPQFSGPQAGPLRRVRAV 511

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
                     Q   P  T     + +                L          +      E
Sbjct: 512  LAAAARCHRQGQDPRYTLWAAWHRSGLQ----------SRWLTASERGGPAGVQAARDLE 561

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
               TL  +  + +   S   A+    I+ +T L         + ++  + +L    +   
Sbjct: 562  LVTTLFDITDQYVSRTSG--ASLRGLIEYVTALQLPPVSAEPVSQTQQVTVLSAHAALGH 619

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQ------------SDLNLKTAEKYIGQAAHD 687
             +D +++ GL EG+WP    +   L+                +   L   E+ +  AA  
Sbjct: 620  EWDLVVIAGLQEGLWPNTIPRGGVLATQRLLDELDGVTQSASARAPLLAEERRLLVAAMG 679

Query: 688  FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG-----GTDFFDNLKKRGQCYLDWT 742
                      +   +      P + S +   +  L                R        
Sbjct: 680  RARRRLLVTAVDNDAGGGGQEPALPSAFFFEIARLADGGGEPAAAQAESAPRVLSAAAVV 739

Query: 743  RKLDYTTKQPHYKRPKPFPP-----------------------------------LEAQP 767
             +L      P                                                  
Sbjct: 740  GRLRAVVCAPDGTVDDAARACAATQLARLAMAGVAGADPDGWHGLIPVSTSEPLYGSGDV 799

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             T + S ++ L   P      R                +  G++ H +I         ++
Sbjct: 800  VTLTPSSLQTLSECPLRWLTERHGGAKPRELR------SAVGSVLHALI-----AGPGRS 848

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
               +   + ++        +               +  SF+E   + +  + ++ V I  
Sbjct: 849  EAHLLAELDRVWRRLPFDASWYSS---NELARHRAMIQSFVEWRARTRGELTEVGVEIEV 905

Query: 888  KMAI-----ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
               +     +   I L G  DR++   +G + I D KTG  P  +   +    QL++   
Sbjct: 906  DGVLQTRRDDGGKIRLRGRVDRLERDGAGRLVIVDVKTGKTPVSKDDAQQHA-QLAMYQL 964

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
            A+  G     D    A L Y          C T    +   D L+  +      +V    
Sbjct: 965  AVAEGMVPAGDEPGGARLVY-------PGKCATTGATERQQDPLTPATRDQWRGLVRQAA 1017

Query: 1003 NGEQP--FISHLR 1013
                   FI+   
Sbjct: 1018 EAMAGPQFIARRN 1030


>gi|296118828|ref|ZP_06837404.1| helicase, UvrD/Rep family [Corynebacterium ammoniagenes DSM 20306]
 gi|295968317|gb|EFG81566.1| helicase, UvrD/Rep family [Corynebacterium ammoniagenes DSM 20306]
          Length = 1087

 Score =  203 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 122/1087 (11%), Positives = 280/1087 (25%), Gaps = 152/1087 (13%)

Query: 6    PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL----R 61
            P + T    +     M   +++       R +         V     T++A Q+L    R
Sbjct: 35   PKLVTAGAGAGKTETMASRVVSLVANGYVRPE--------QVLGLTFTRKAAQQLEQRIR 86

Query: 62   SEFIEITGKKSTILP---IIKSLGDVV-----EEKFTADLLLSYNLNPPVSNIQRLLELA 113
            +  I++        P   + ++L  +       + +  +L+  Y L  PV    RL+  A
Sbjct: 87   NSLIQLRDTG-LFAPGSDVAQALESIAPKVMTYDAYAGELVSEYGLYLPVEPSARLITDA 145

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIETE-EKKWEDL 169
                I    + +   ++   + ++      N + LA N+ +++   D I         D 
Sbjct: 146  ERFAIAHEIVSNHSGEMTTTTSVATVAQ--NVLKLADNMGNVLMSQDDIREHARIMLSDA 203

Query: 170  HAL-----KNEKYGMWWLLAADFLKI------ASKYWTERLVELNASSPVGYQIALMRAE 218
              L        ++        D  KI        +    +  EL   S         R  
Sbjct: 204  TELPKARKSGPEFSKDLQKILDVQKIRVEYLELVEELQRQQHELGVVSFGEQMTFAARVA 263

Query: 219  AEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVAN--HPNGAIVLPGLDCHIPTAIW 271
            +       + +     +++     +  +   L+ ++          V    D       W
Sbjct: 264  SAQPGIGAIQRQRYRVVMLDEYQDTSHSQRVLLRSLFGGTPHPELSVTAVGDPMQAIYGW 323

Query: 272  NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
               T ++ N    +            +L                          +   + 
Sbjct: 324  RGATTENLNAFIRDFPLEDDTPAPQDQLTVSWRNPSRV----------------LELANV 367

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---- 387
            +  D     +   ++           DV L   + + +E   +A+ ++   +++++    
Sbjct: 368  VADDIFAGAHPRPVDRLSARPGADEGDVQLGYFETQEQEREFVALHMKKIYEQSQQVEID 427

Query: 388  ----------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                       +A++      A  +   L   G+  +I     L        + ++   +
Sbjct: 428  DTGRATKKSLSAAILVRTNRHAAEIGRHLQAHGVPYEIVGLGGLLWEPEIQDMVAIATML 487

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD----LKSLVL 493
             +  D  A   ++  PL   G  +      +      A           D    L++ + 
Sbjct: 488  VRPQDSAAALRILAGPLCGLGMTDINALHKRVENMTGAAEERIVYSPGDDPLDHLRAQLQ 547

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
             ++                +  D   A    D   + I  L +   +        S+SD 
Sbjct: 548  QQVDNATTKRPEQILGLADAVADMGEAERYTDEGRERIEKLASKLRHLRGYSLGKSLSDL 607

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                 T           ++           L      +           ++++D+     
Sbjct: 608  FADIETTFN-----LRTEVLARDSVGGATHLDKFADIVASYQGDTVGGLLDYLDLAREHE 662

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT------------AKN 661
            +G            + +L   +S+ L ++ + +   +   +                  +
Sbjct: 663  NGLDPGEVPAVDDRVLVLTVHKSKGLEWEHVCVLHADSTTYGAKANSFITKVEQVPDEDD 722

Query: 662  PFLSRVMQSDLNLKTA------------------EKYIGQAAHDFEMANGTRHLIYTRSL 703
                                                   ++A  F +A        T + 
Sbjct: 723  VIEPEPQYDKNGEPKPITRTDYGKAAKALEQQYKADNAEESARLFYVAMTRTEKSLTVTG 782

Query: 704  R-------ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ--------------CYLDWT 742
                     +        +L+ L         +      +               +L+ T
Sbjct: 783  GGTNSFKPGHGSKKGPYLYLEMLAEKFPDLVVEWTVPDEEPEDATGQGLESGVFPFLEPT 842

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK- 801
                   K     R         +      S+   LI + +      +L++         
Sbjct: 843  PAAVRGAKLVEAARADLPEAQSGEEFGLWESDATALIEE-HRALTTPVLEVPMPSELTAS 901

Query: 802  -----DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
                   D  +        +         + T   + L ++       +E+  P    + 
Sbjct: 902  DVVNLATDPDEFARRRRRPVPFKPNSYAKRGTAFHSWLEERFGMEALLEEDELPGTGEVP 961

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
                  +   FLE E   +S      V  P +    S G  L G  D +     G   + 
Sbjct: 962  VADVEALKEKFLESEWANRS---PYAVETPFR--FNSGGQILNGRMDAVFKEPDGSWFVV 1016

Query: 917  DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
            D+KTG  P+    +     QL++     + G    I   +     +  +   F  +    
Sbjct: 1017 DWKTGRPPQGRDME-HAALQLAIY----REGWRRIIADGQPIRAGFHYVSDNFTFEPRNL 1071

Query: 977  DKKKYSA 983
               +  A
Sbjct: 1072 PDGEELA 1078


>gi|312194643|ref|YP_004014704.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311225979|gb|ADP78834.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 1140

 Score =  203 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 116/993 (11%), Positives = 252/993 (25%), Gaps = 108/993 (10%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE           L S+ +   ++RA +EL           +   P+  +       +
Sbjct: 73   TLVEAVARRVEAGQELGSILVLTFSRRAARELSERITARV-GAAFGGPVAWTFHSWCYAQ 131

Query: 89   FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
              A  +        ++  +R   L  LI        D  ++L      +           
Sbjct: 132  LRAYPMAGDPAPRLLTGPERFTRLRELI--------DGSRELGRPGWPAPLEVCLRTRGF 183

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
            A+ +  ++  +         L  L        W   A F                     
Sbjct: 184  AEEVEALLARVREVGLDPASLEELAARARRPDWAALARFYTDYLDNLGYDGALDYPELGH 243

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                 +   E    ++     + +     + PA  RL++ +     G  ++   D     
Sbjct: 244  RAARLVEDPERGQPIRDRYRAVFVDEYQDTDPAQERLLAAL--TAGGGDLVAFGDPDQSI 301

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +     +      +    +          +  L + R     +   S E+  R     
Sbjct: 302  YAFRGARVRGLLDFPARFRRAD----RSPADVLALGVSRRMSPPVLAASREVASR----- 352

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---N 385
               LP     +          P       +V  +   +E  E  +IA  LR         
Sbjct: 353  ---LPVSGLPVWALRAHRRLAPAEPDHAGEVEALSFPSEGAETEAIADLLRREHLTRAVP 409

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKL--ND 442
              + A++T        V   LT  G+ +D++    PL+    +++L + L          
Sbjct: 410  WHEMAVLTRSAEALPAVARALTAAGVPVDLAGDEPPLAERPAAALLLTALRCADDPGSLT 469

Query: 443  FMAIATLVKHPLAKFGFPEKYLS--------------RAKNALELVALRGNKNSYDIMDL 488
                 +L+  PL                             A    + +   +S      
Sbjct: 470  TADARSLLLSPLGGADPAGLRALGRALRDHARSAPGEAVAAADGADSDQAPGSSVGWPAG 529

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                 + I     +         +  E    AV +   +      L    T +++     
Sbjct: 530  LVSSAELIRDLVADPGSLPGP--VPAELARPAVQVGSLLALVGRRLRAGVTPQDALWALW 587

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
              + W         +      R        +    L     ++ E             D+
Sbjct: 588  EGTAWPARLRRVSASGYGAARR--AAEADLDAVVALFDAAGRLGERRGPGGGAQGLIADL 645

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
             ++    +       +   + +L    ++ L +D +++ G+ +G WP   A++  L    
Sbjct: 646  TSQDFAADDRAGAEVRPDAVRLLTAHRAKGLEWDVVVIRGVQDGAWPDLRAQHSLLGTEQ 705

Query: 669  QSDLNL-------KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP------------ 709
                            +++  +    +      RH +   ++                  
Sbjct: 706  LDAPQRGGLRPPETPRDRWAEERRLFYVAVTRARHRLVVTAVDAVGADGARRSELLAELG 765

Query: 710  --------------TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                          T+ S       +         L++  +  L     +     +P   
Sbjct: 766  VRITSGASWTPRPLTLPSLVATLRRLAADPGATPALRQAARRRLATLAAVTDHADRPLVL 825

Query: 756  RPKPFPPLEAQPRTYSFSEIKQL--------------INDPYAVYARRILKLDFIPHFKK 801
               P     A+  T S   +                  +     +               
Sbjct: 826  SAHPDRWWGARDETASDVPVAAPTAPIPLSGSSLSSLRDCSLRWFLEHEAHAGQP----- 880

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
                   G + H +  E+   R   +   ++  +  ++      E               
Sbjct: 881  ATTAQSFGRVVHALADEVTAGRTPADLAALDARL-DLVWRQLAFEAQWRSDQERTAAR-- 937

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
            +    FL+     +     +         + ++   + L G  DRI+L   G V + D+K
Sbjct: 938  QALARFLDWHAAER-GRAVLGSEARFGIDLTVDGRPVRLRGSMDRIELDDGGQVHVVDFK 996

Query: 920  TGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
            TG          + +  QL     A++ G+   
Sbjct: 997  TGRSAVSPREIAEHV--QLGTYQLAVREGAVDD 1027


>gi|290957555|ref|YP_003488737.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
 gi|260647081|emb|CBG70180.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
          Length = 1121

 Score =  203 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 130/1104 (11%), Positives = 266/1104 (24%), Gaps = 150/1104 (13%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE            A V +   +++A  ELR       G  +   P   +        
Sbjct: 22   TLVEAVAGRVARGADPARVLVLTFSRKAAVELRDRMALRMG--AARAPQATTFHSFCYAL 79

Query: 89   FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A  D  L       +S  ++ + +  L+    +        L          +     
Sbjct: 80   IRAHQDSDLFVEPLRLLSGPEQDVAVRALLAGQPDLER---LGLAHVRWPDELRACLTTR 136

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++          EDL A         W+ A+ FL         + V   A  
Sbjct: 137  GFADEVRAVLARSRELGLAPEDLRAFATRIGRPDWIAASAFLAEYLDVLDLQGVLDYAEL 196

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 +   R      +      + +     + PA  RL+  +A    G  ++   D   
Sbjct: 197  VHRAVLLAGRPGVAERLAARYDAVYVDEYQDTDPAQVRLLRALAG--GGRTLVAFGDPDQ 254

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +            S               +  L   R     L   +  +  R   
Sbjct: 255  SIYTFRGADVNGILEFPSAFPRVD----GRPAPVVVLRHSRRSGAELLTATRLLTQR--- 307

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
                      + +    +  ++     +    V +        E  +IA  LR +  E+ 
Sbjct: 308  -------MPLTRLPAEKVRAHRELRPVRDGGRVEVYTYPTPGTELDNIADVLRRAHLEDG 360

Query: 387  ----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKL- 440
                + + L+ A       ++  LT  G+ ++I     PL        L + L A+ +  
Sbjct: 361  VPWSEMAVLVRAGARTIPSMRRALTAAGVPLEIDGDDLPLRHEPAVQPLLTALRAVARAE 420

Query: 441  ---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD--- 494
                D  A A     P+      E +    +        R                    
Sbjct: 421  LETADAAAPAEEPDGPVPDGPVEEPHGPSEEPHGPSGEPREPSGDPSGEPHDPSADPSGQ 480

Query: 495  ------------------RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC------ 530
                               + T+   T +    + +   D       +    +       
Sbjct: 481  PHDRGGDPSAEPGPPRTSWLDTETALTLLASPLAGMDTADLRRLGRALREEERAGGNPVP 540

Query: 531  -------ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                      L   +            +      +   +            LW   +G  
Sbjct: 541  PPSDELLTRALAEPERLVAHDPVYARGAQRLGALLRKARERLAGGGTTEEALWELWDGTP 600

Query: 584  LSSLF---------------------------SKIIETGSCIKANAIEWIDIITRLIDGE 616
                                            +   E  +          +I    I  +
Sbjct: 601  WPRRLERAARRGGAAGRNADRDLDAVCALFATAARAEERTGGLGALNFLAEIEAEDIAAD 660

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            T+  +  +   + ++    S+ L +  +++ G+ EG+WP    +   L         L  
Sbjct: 661  TLTGRAVRPDAVRLMTAHRSKGLQWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAE 720

Query: 677  AEKYIGQAA----HDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
                    A      +  A   R  L+ T      +     SR+L  L V          
Sbjct: 721  PLTPGALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLAELGV--EPRDVTGR 778

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPK-----------------------PFPPLEAQPR 768
             +R         +L  TT  P    P                        P         
Sbjct: 779  PRRPLSVASLVAELRATTVDPRVSEPLREAAALRLARLAALSDEDGRPLVPSAHPYRWWG 838

Query: 769  TYSFSEIKQLINDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHN 814
             +  +E K  + +           L                +            G + H 
Sbjct: 839  MFEPTESKVPLRNRDQPVVLSGSALDQLANTCALQWFLGREVKADAPATAAQGFGNVVH- 897

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            ++ + +         ++       + +    +                    FL+     
Sbjct: 898  VLADEVASGRTPADLDVLMERLDSVWNALAFDAPWKSEQEKQHARV--ALERFLKWHVMD 955

Query: 875  QSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQK 931
            ++    +       + +E+    + + G  DR++    G   + D+KTG          +
Sbjct: 956  RTGRTPVASEHDFDVTLEAGDYEVRIRGSMDRVETDTEGRAYVVDFKTGKQAVSSGEVTR 1015

Query: 932  LIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
               PQL++   A++ G+  +       +      ++L+Q            K  A E  +
Sbjct: 1016 H--PQLAVYQLAVREGAVDEPFGGVRPEAGGAELVQLRQGAARKNGGETVPKVQAQEPLQ 1073

Query: 989  KSL--KNLIEIVTLLQNGEQPFIS 1010
                   L      + +      +
Sbjct: 1074 GEWVGDLLATAAGKVLDERFSPTA 1097


>gi|145225244|ref|YP_001135922.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
 gi|145217730|gb|ABP47134.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
          Length = 1038

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 121/1041 (11%), Positives = 270/1041 (25%), Gaps = 110/1041 (10%)

Query: 27   NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS----EFIEITGKKSTILPIIKSLG 82
            +  LV+             SV +   + R   ++R+      +   G+ +   P+++++ 
Sbjct: 33   SSLLVDTAVAHIAAGCDPESVLLLTGSARLSVQVRASITSALLGAGGRAAVREPLVRTVH 92

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY--PESPLSLPI 140
                         + +  P      RL+  A    I R  L   ++D    P        
Sbjct: 93   SYAFGVLRLAAQRNGSPPP------RLITSAEQDGIIRELLAGDVEDGPASPVRWPEQLR 146

Query: 141  SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
               + +  A  L D++            L  +        W  A  F +   +       
Sbjct: 147  PALSTVGFATELRDLMARCSERGIDPVALQRIGRHAGRPEWQAAGRFAQAYEQ------- 199

Query: 201  ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                   +    + +   A        G   + G+     A    + +        +++ 
Sbjct: 200  -------IMLLRSAVGMAAPQATVPALGAAELVGAALEAFAMDADLLSAERSRVQLLLVD 252

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
                  P A        +    +          +        L         L       
Sbjct: 253  DAQHLDPQAARLVEVLAAGAELTVIAGDPHQTVFGYRGADPALLRGDGPALILNRSHRCA 312

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
               +  I+        +D         +          +A+  A +   E+  IA ALR 
Sbjct: 313  APLADAIAAITRRLPGADASREFTGRAE-------QGTLAVRIAASPHAESALIADALRR 365

Query: 381  SLD----ENKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLN 435
            +         + + ++ +       +   L   G+ ++      PL+       L ++L 
Sbjct: 366  AHLVDGVPWDRMAVIVRSVPRTGASLGRALAAAGVPVEDPHPDVPLANQPAVQALLTVLE 425

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            A  +  D      LV  P+ +         R      + A         +  L+  V   
Sbjct: 426  ATAEKLDGERALALVTGPIGRVDPVSLRQLRRTLRRGVTAPDRGFGELLVEALERDVAAL 485

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                                       L   +             + +     + S   K
Sbjct: 486  PDEHAR-----------------ALRRLRAVLTSARRSAEQGGDPRQTLWQAWNRSGLQK 528

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
              +   +       +   +L        ++  + +     S                +  
Sbjct: 529  RWLAAAERGGPAAAQAERDLDAVTALFDVAEQYVERTAGASLRGLIDHI------TGLSL 582

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL--- 672
               +        + ++    +    +D ++L GL EG+WP  + +   L+     D+   
Sbjct: 583  PPARGDARSGDAVALISAHAALSGEWDFVVLAGLQEGLWPNVSPRGGVLATQHLVDVIDG 642

Query: 673  ------NLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLREN--NIPTIASRWLQRLLVLG 723
                   L +    + +       A    R  +   ++  +  +   + S +   L  + 
Sbjct: 643  VAAPGQRLSSRAPLLAEERRLLIAAMGRARSRVLVTAVDSDSGDEAALPSPFCHELAAMA 702

Query: 724  -GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE--AQPRTYSFSEIKQLIN 780
                    L  R    L     +            +        A  +    +       
Sbjct: 703  TEPVPEPALPIRAPRVLSPAAVVGRLRSVVCAGSDEVSEDERVCAAAQLARLATAGVHGA 762

Query: 781  DPYAVYARRILKLDFIPHFKKD----PDRTDRGTLFHNIITELIKKRINKNTPE------ 830
            DP + Y  R L  D       D       +    L    +  L+++       +      
Sbjct: 763  DPSSWYGARELSSDEPLWDGDDHVVTLSPSTLQMLADCPLRWLLERHGGARGRDVRSTLG 822

Query: 831  ------------INHLMKQIIDSHFEKENLPPHIDI-IWRHLFHKISHSFLEHEEKIQSS 877
                           ++   +D  + K            R    ++  +FL+     +  
Sbjct: 823  SLVHALVSESGTAESVLLDELDKVWGKLPFDAQWHSDNERIRHLEMLATFLKWRSDTRGE 882

Query: 878  IEKIFVNIPAKMAI-----ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
            + ++   I     +     +  G+ + G  DR++    G + + D KTG +P  +   + 
Sbjct: 883  LTEVGTEIDVDGVVAGGEGDGPGVRVRGRLDRLERDSEGRLVVVDVKTGKSPVSKDDAQA 942

Query: 933  IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
               QL++   A+ AG  +  D      L Y+    K      T   +     E+ E    
Sbjct: 943  HA-QLAMYQLAVAAGLIADGDEPGGGRLVYL---GKTTGGRATERHQDAVTPEVRELWEA 998

Query: 993  NLIEIVTLLQNGEQPFISHLR 1013
             + E     Q     F++ + 
Sbjct: 999  RVHEAAAATQGPS--FVARVN 1017


>gi|325261822|ref|ZP_08128560.1| putative ATP-dependent nuclease subunit B [Clostridium sp. D5]
 gi|324033276|gb|EGB94553.1| putative ATP-dependent nuclease subunit B [Clostridium sp. D5]
          Length = 1120

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 103/897 (11%), Positives = 235/897 (26%), Gaps = 119/897 (13%)

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKYWTERLVELNASSPVG 209
            +  +I         +E L           +       ++   + +   L +   +    
Sbjct: 121 EVKSVISEFTQYGIGFEKLDEFMEGLAPESYLYYKLQDIRRVYEGFENYLADKYIT--KE 178

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             + ++     H        +++ G TG  P   +L+  +       +V   +D      
Sbjct: 179 ELLDVLSDAVPHSELLKNSVVVLDGFTGFTPVQNKLLGELMRVCRNVVVTAVMDSREDPY 238

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
           ++                          +++  L     + +     +  +Y R     K
Sbjct: 239 VYKH---------------PYQLFALSRQMVTSLVQTARENRAQVEEAVCLYSRPFYRFK 283

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--- 386
                   +       + +    Q     +++    N ++EA  +A  +R  + E     
Sbjct: 284 DNEVLGFLEAELFRYSKKQYEREQDV---LSVHVVRNPKQEAEYVASGIRHLVREKGLRY 340

Query: 387 KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
           +  A+I +D +            +GI I +     +        + SLL    +   + +
Sbjct: 341 RDIAVIASDMDAYAVCMEKACDTYGIPIFMDHKKSILLNAFVEYVRSLLAMAEQNFSYES 400

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           +   ++  +A F        R  + +E   L      Y       +       ++  + +
Sbjct: 401 VFRYLRTGMAGFT------RREIDQMENYVLALGLKGYKKWQAAWVRRTSGMEEEALSEL 454

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
              + R  E+   L  +L                        + + +         +   
Sbjct: 455 NGLRVRFVEQLDALVYVLKQPSKTVKDVTAAVYDFLAKQQAQVRLKEMEVRFQEQGELAL 514

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                      + +  +    LF K +E     + +  E+ +++   ++   V       
Sbjct: 515 A--------KEYAQVYRITIELFDKFVELLGDERISLKEYCELLDAGMEEAKVGVIPPSL 566

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEK 679
             + I     +RL +   L   G N+ + P +  +   LS   +             A++
Sbjct: 567 DQVVIGDVERTRLKDIKALFFVGANDTLLPGSLGQGGLLSERDREQFAGQKISLSPGAKE 626

Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRE---NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                     M         + S             +  +Q L  L       + + +G 
Sbjct: 627 KTYIQKFYLYMNLTKPTKYLSISFSRVSAEGKTLRPAYLVQDLRRLFPLLKIRDEETKGL 686

Query: 737 CYLDWTR--------------------------------------KLDYT--TKQPHYKR 756
              + T                                        LD     K P    
Sbjct: 687 AQTELTEKTAMNYLVQGLRERALGVNEEWKELYTWYVKHAAGTEKILDAAFFKKTPERLT 746

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                 +      +S + +++  +  YA +    L+L          +  D G + H  +
Sbjct: 747 KTAAEMMYGDASRFSVTRLERFASCAYAHFLTYGLRLSDREA--YQFEAMDLGNIAHQSM 804

Query: 817 TELIK-------KRINKNTPEINHLMKQIIDSHFEKEN----LPPHIDIIWRHLFHKISH 865
               K         I         L+++ ++                +        K+ H
Sbjct: 805 ERFAKKADINQVSWIGMPEEMRAQLIEESVEESIVDYGNTVLYSTARNEYMITRIKKLIH 864

Query: 866 S--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF---VDITDYKT 920
              +   E+  +         +             +G  DRID  +      V +TDYKT
Sbjct: 865 RSVWALTEQLRKGDFVPSGYEMKFG----------SGKIDRIDTCEDEEKIYVKVTDYKT 914

Query: 921 GDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQKFKIDCI 974
           G            +  QL +   A       +   ++   A +FY R+K        
Sbjct: 915 GSRSFDITAFYHGLQMQLPVYLNAAMDMEQKKHPGQEIQPAGIFYYRMKDPIVEKEK 971


>gi|163786813|ref|ZP_02181261.1| hypothetical protein FBALC1_16547 [Flavobacteriales bacterium ALC-1]
 gi|159878673|gb|EDP72729.1| hypothetical protein FBALC1_16547 [Flavobacteriales bacterium ALC-1]
          Length = 919

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 148/1004 (14%), Positives = 305/1004 (30%), Gaps = 144/1004 (14%)

Query: 42   LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
            L    +   +P+KRA   L+     +  ++    P I S+ + VEE        +  L  
Sbjct: 17   LKFEDLRFVLPSKRAGVFLKHHLSTLL-EQPIFAPHILSIEEFVEELSGLQNTSNTEL-- 73

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
                      L +L   ++    +               S  +    A+ L    + I+ 
Sbjct: 74   ----------LFKLYESYKELTIEA-----------DLESFDSFSKWAQILLQDFNEID- 111

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                      L  ++                 Y      ELN  S    Q  L++   + 
Sbjct: 112  --------RYLIPQEQ-------------IFDYLNAI-KELNHWSLEATQTELIKNHLKF 149

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
              +     +     T S+    +    +  +   A  L          I   +   + N 
Sbjct: 150  WKRLKDYYLT---FTESLLQNKKGYQGLI-YREAAENLEAYIESNADKIHVFLGFNALNE 205

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            + S             +++  L                +               +     
Sbjct: 206  SES-------------RIIQGLLQNDLAHIYWDIDKTFIEDPIHDAGLFTRNHKSKWKYF 252

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSALITADRNLA 399
             +   N I +         +I       +A  I   L      ++N    A++  + NL 
Sbjct: 253  KNEPFNWITSHYCNKKKTEVIGIPKLIGQAKYIGQLLEDISKTNKNLSSVAVVLGEENLL 312

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
              V   + +                     +T L   +     F+ +A+L +H  A    
Sbjct: 313  IPVLNSIPKA--------------------VTQLNVTMGLPLQFVPLASLFEHLYAIHKN 352

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
              +             +    +   I  L       I+ +  +    +    ++ E+   
Sbjct: 353  NPQNF-------YYKDVISILSHPSIYPLFKTESKNISGEIIDYIQKNNLVYITVEN--- 402

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
                +         L+            +++   + L      N    + +    L +  
Sbjct: 403  ----LKKTNNIHNELLDLLFKSWEDNSKVALKSCSDLIFKMKANFDNSKKKNSLELEYLY 458

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
               +L +  +++      +  N      I   L+  ET+  K E    L I+G LESR+L
Sbjct: 459  RFNSLFNQLNELNNNHKYLN-NVSILHTIYKELLSLETLDFKGEPLEGLQIMGMLESRVL 517

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYIGQAAHDFEMANGTRHLI 698
            +F+T+I+  +NEG+ P     N F+   ++ + NL T  EK      H + +    +++ 
Sbjct: 518  DFETVIISSVNEGILPSGKTNNSFIPFDVKVENNLPTYKEKDAVYTYHFYRLLQRAKNVY 577

Query: 699  YTRSLR-ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
               +   +       SR++ +L + G                     ++   KQ      
Sbjct: 578  ILYNTEVDTLKGGEKSRFITQLEIEGIHKIKHITISPEVPI------IESPLKQIPKTPL 631

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
                      + +S S +   I +P   Y  +IL +      +++      G++ HN + 
Sbjct: 632  VTEKIKALALKGFSPSSLTNYIRNPIDFYFEKILGVKEFEDVEENIAANTLGSVIHNSLE 691

Query: 818  ELIKKRIN-----KNTPEINHLMKQIIDSHF----EKENLPPHIDIIWRHLFHKISHSFL 868
            +L K         ++     H +KQI+  HF    +  +     ++I   +  +   +F+
Sbjct: 692  DLYKPLEGSFLTVEHLKTFKHQIKQIVTKHFKGLYKDGDFSKGKNLIIFEIAQRYISNFI 751

Query: 869  EHEEKI---QSSIEKIFVNIP--AKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTG 921
              E +     + I+ I +       + I+ +   I L G  DRID L +G   + DYK+G
Sbjct: 752  TSEIESLNNGNQIKIIAIEADETIDIEIDGLVFPIKLNGKVDRIDEL-NGVTRVIDYKSG 810

Query: 922  DNPKKE-------TAQKLIDP-----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969
               + +             D      Q+   A  +   S  ++   +   + +  LK+ F
Sbjct: 811  KVEQNKVEIVNWEDLTTDYDKYSKSFQILCYAYMMHKKSLIEL-PVEAGIISFKNLKEGF 869

Query: 970  KIDCITNDKKKYSADELSEK-----SLKNLIEIVTLLQNGEQPF 1008
                        + D+L  +         L ++V  + N    F
Sbjct: 870  LNFGKKESSHSRTKDQLITEETLCNFETELKKLVLEICNPNIDF 913


>gi|325286151|ref|YP_004261941.1| hypothetical protein Celly_1242 [Cellulophaga lytica DSM 7489]
 gi|324321605|gb|ADY29070.1| hypothetical protein Celly_1242 [Cellulophaga lytica DSM 7489]
          Length = 910

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 113/733 (15%), Positives = 232/733 (31%), Gaps = 84/733 (11%)

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                                          D              ++ +        +A 
Sbjct: 223  WDLDEYFYSDPVHDAGFFIRQFSKQWYYFKDKPLQVTNGNYLTPKNITITGVPKNVSQAK 282

Query: 373  SIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
             I   L    ++ K      A++  D  L   +   +      I+I+ G PL  +   S+
Sbjct: 283  YIGSVLGKLYNDKKSMLTNTAVVLGDETLLNPLINAIPEEINGINITMGFPLHKSPLESL 342

Query: 430  LTSLLNAI----FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
             + L +       K   +  + T++ HP  +  F  +  +          ++     Y  
Sbjct: 343  FSQLFDLYIRKDEKGWYYQHVTTVLNHPYIQLLFATEDNTINAADAICNQIKSRNWIYVD 402

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
            +    L+                                          +     K++  
Sbjct: 403  VAKLQLISSTSN-------------------------------------LDLLFYKSNLT 425

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
              + I     L +   + +          L +      L +  + ++     +  +    
Sbjct: 426  VPVFIKKCLALILAVKEKINA--EGNGLELEYLYRFHQLFNQLNNLVVKYPFLN-DLQSL 482

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
              +   L+  ET+  K E    L I+G LESR L+F+T++L  +NEG+ P   + N F+ 
Sbjct: 483  FGLYKELLSSETLDFKGEPLKGLQIMGMLESRNLDFETVLLTSVNEGILPSGKSNNSFIP 542

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIP-TIASRWLQRLLVLG 723
              ++    L T ++      + F       +++    +   + +     SR +++L    
Sbjct: 543  FDIKKMYGLPTYKEKDAVYTYHFYRLLQRAKNIHLVYNTEPDVLEGGEVSRLIRQL---L 599

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                  N       + +                             +S + +   I +P 
Sbjct: 600  ADSNISNYITETIAFPEIKSPKKKVVSIQKDAHLM-ELIKGIAAYGFSPTSLSNYIRNPL 658

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQI--- 838
              Y + ILK++ +   ++       GT+ H  + EL +  +N      ++  L+ +I   
Sbjct: 659  DFYKKNILKINELEEVEETVAANTFGTIVHETLDELYQPFVNTFLEAEQLKALLPKINST 718

Query: 839  IDSHFEKE----NLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAKMAIE 892
            +  HF       +L    ++I  ++  K   +F++ E +      I+ I + +  K AI 
Sbjct: 719  VRKHFAIHYKNVSLEEGKNLIAFNVVLKYVENFIKLEIESAKKHKIKIIGLELSLKTAIN 778

Query: 893  SIG----IHLTGFADRIDLLKSGFVDITDYKTGDNPKK-----------ETAQKLIDPQL 937
              G    +H+ G  DRID +  G + + DYKTG   ++           E   K    QL
Sbjct: 779  VPGVNFPVHIKGKLDRIDEI-DGVLRVIDYKTGKVEQRNLNLSNWEDIVEEYDKSKAFQL 837

Query: 938  SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
               A          +D  +     +  +K         N     + D L  K  K L ++
Sbjct: 838  LCYAYMYNH--LVPVDKVEAGIFSFKNIKAGILKFS-ENKNSIITQDTLL-KFTKELHKL 893

Query: 998  VTLLQNGEQPFIS 1010
            V  + + +QPF++
Sbjct: 894  VGAICDPDQPFVA 906



 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 70/266 (26%), Gaps = 40/266 (15%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L ++   +P+KRA   L++   + T   +   P I+S+ D VE                
Sbjct: 18  SLENLIFVLPSKRAGTFLKNAISKHT-SSTIFAPEIQSIEDFVENISGLAYA-------- 68

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S+ Q+L EL +          D                          L    + I+  
Sbjct: 69  -SSTQQLFELYKAYTTTVKGEQDTFY---------------AFSKWGTTLLQDFNEIDRY 112

Query: 163 EKKWEDL-HALKNEKYGMWWL-------------LAADFLKIASKYWTERLVELNASSPV 208
               + +   L   +    W                 + L+     +   L +       
Sbjct: 113 LVDTKKIFSHLNAVQEINHWTVEKDKSTIITNYMAFWNSLEELYTAFNTSLKQDGLGHQG 172

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                       ++   +K   +  G      A   ++ T+  + N A +   LD +  +
Sbjct: 173 LVYREACANLNAYIQSTSKQKHLFIGFNALNTAEELIIQTILENTN-AEIYWDLDEYFYS 231

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQY 294
              +         +     +   P  
Sbjct: 232 DPVHDAGFFIRQFSKQWYYFKDKPLQ 257


>gi|328911094|gb|AEB62690.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus
            amyloliquefaciens LL3]
          Length = 1166

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 116/1036 (11%), Positives = 263/1036 (25%), Gaps = 152/1036 (14%)

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
            E  +       I   + S   +          ++    P V+     + L +LI   +  
Sbjct: 50   ELAKTPDIGGMIRAQVFSFSRLAWRVLQHTGGMNR---PFVTTTGVQMLLRKLIEEHK-- 104

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
                           +    ++     + +  ++   +    + ED+  +        + 
Sbjct: 105  -----------HDFKVYQKASDKTGFTEQVERMLTEFKRYCIEPEDVRRMAESGTASEYR 153

Query: 183  ------LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST 236
                       L I  +     L            + L+  +           + + G  
Sbjct: 154  GERMLSEKLHDLGILYQQMERSLA--GHYLHSEDYLTLLAQQIPLADVIKGARVYVDGFY 211

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
               P   R++  +  H          D        + +       ++          Y L
Sbjct: 212  QFTPQELRVLEQLIMHAEHVTFSLTADSPSAEQAPDELDLFRMTGSTY---------YKL 262

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
             +    L+      K L                            +              
Sbjct: 263  YQTAKELNADIS-CKELHGTKR------------HQHVPELACIESQYDVRPAAVYTGGQ 309

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGIN 412
                +I+A N R E   IA  ++  + +        + LI    +    +K     +G+ 
Sbjct: 310  EAFTVIQAQNRRAELEGIAREIQSLVRDRGYRYRDMAILIRQPEDYKDLLKEVFADYGLP 369

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNAL 471
              I     +        + S L+ +     + A+    K  L      PE+ +    + L
Sbjct: 370  YFIDGKASMQHHPLIEFIRSSLDVVKGNWRYEAVFRCAKTELLFPLDQPEQKIREQVDQL 429

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
            E   +          + +  V  R  +   +      +  +     E    + + +++  
Sbjct: 430  ENYCIAYGIKGERWTNGERFVYRRFVSLDEDFAQTDQEIEMEHMLNETREWMAEPLIRLQ 489

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR--KLPNLWFEEEGKTLSSLFS 589
              L   KT ++         + T + +   +     E     +      +    +  L  
Sbjct: 490  NRLKKAKTVQSMAEALYLFLEDTDVPLKLDRKRQQAEEAGNMIEAQQHGQAWDAVIQLLE 549

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            +        + +   +  ++    +             +F+     SR+       + G 
Sbjct: 550  EFTGMMGEDEMSLALFQQMLETGTESLHFSLIPPALDQVFVGNMDLSRMYGTSCTFVIGA 609

Query: 650  NEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR--HLIYTR 701
            N+GV P    +N  LS   +       + L +A +      H    MA  +    L  T 
Sbjct: 610  NDGVLPARPDENGVLSDDDREWLKAVGVELSSAGRERLLDEHFLIYMALSSPSDRLYVTY 669

Query: 702  SLRENNIPTI-ASRWLQRLLVLGGTD---------------------------------- 726
             + +    T+  S  + RL  L                                      
Sbjct: 670  PIADAEGKTLLPSIVVNRLGELFPDHQEKLSAADPEQVSEEEQLQYLVNKQVAQTYTASQ 729

Query: 727  ---FFDNLKKRGQCYLDWTRKLDYTT---------------KQPHYKRPKPFPPLEAQPR 768
               +    +     +  +   +                   +     RP     L  +  
Sbjct: 730  LRLWTREYEISDVWWSAYNVLMKEPDHERAKKLFSSLFFRNEAKRLDRP-VSRQLYGEHI 788

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S ++      ++ +A   L+L     F    +  D G LFH+ +  +  +   +  
Sbjct: 789  KGSVSRMEAFNACQFSHFASHGLQLKERQFF--KLEAPDIGQLFHSSLKLISDRLREQKL 846

Query: 829  PEIN-----------HLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSF--LEHEEKI 874
               +             ++++     +KE L       + +    KI      +  E   
Sbjct: 847  EWRDLTKDQCRNFSYDAVERLAPR-LQKEILLSSNRHFYVKEKLQKIVTRVSGILSEHAK 905

Query: 875  QSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITDYKTG 921
             S    I + +       +  +   L         G  DR+D  +S     + I DYK+ 
Sbjct: 906  ASGFVPIGLELGFGGSGPLPPLTFTLKNGCTMELVGRIDRVDKAESSKGLLLRIVDYKSS 965

Query: 922  -DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
                        +  Q+      ++   +         A + Y  +      D +     
Sbjct: 966  DKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMKATPAGVLYFHI-----HDPMIQASL 1020

Query: 980  KYSADELSEKSLKNLI 995
                DE+ ++  K   
Sbjct: 1021 PMDLDEIEQEIFKKFK 1036


>gi|86134921|ref|ZP_01053503.1| conserved hypothetical protein [Polaribacter sp. MED152]
 gi|85821784|gb|EAQ42931.1| conserved hypothetical protein [Polaribacter sp. MED152]
          Length = 912

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 131/1033 (12%), Positives = 280/1033 (27%), Gaps = 167/1033 (16%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
            +   + E              V   +P++RA   ++ EF          LP I ++   +
Sbjct: 1    MQSFISETLDDILQTTQTFEDVVFILPSQRAKVFVKQEFKNKISVG--FLPEILNIEQFI 58

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIW-RNKLPDIIKDLYPESPLSLPISPAN 144
            ++        +  L         L     +     +N     +   +  + L        
Sbjct: 59   QQVSGVQKADNIQL---------LFHFYSIYKNVEKNADAFDVFSSWALTVLQDFNELDQ 109

Query: 145  AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
             +   K++   +  IE    KW      K            + L +    +   L++ N 
Sbjct: 110  HLVNTKDIFIYLRDIERLR-KWSVKGTFKETDLIRDHYSFLEKLNVYYDAFYAFLIDKNI 168

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                      ++     L +         G      +  +L   V    N  I       
Sbjct: 169  GYQGLMYREAVKKIDHFLSQNRNKKFFFIGFNALNKSEEKLFQRVLELGNSEIYW----- 223

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
             I  A +N+                                                  S
Sbjct: 224  DIDEAFFNS--------------------------------------------------S 233

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
                K     ++            I N      ++ +I A     +   +   L      
Sbjct: 234  HQAGKFIRKYESEWKYFEKNQLKTIGNSFSNTKNIKVIGAAKNTTQIKYVGEILEEM--P 291

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI------- 437
            +   +AL+ AD  L       L +    I+I+ G PL     +S+L ++           
Sbjct: 292  SFANTALVLADETLLPITLNSLPKAINAINITMGYPLKDVPTTSLLFAIFQLYTSQEKLQ 351

Query: 438  ---FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                    +  +   +KH           L  + +       + N+      D++ L+ +
Sbjct: 352  KTTLNQFYYKDVIRFLKHQSIYK------LLCSVDVFTTQIAKNNQTFIAESDIELLLKN 405

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               + KN  H          +     + L+D +   +  L                 ++ 
Sbjct: 406  EDDSIKNVIHNLFKPFISVTDFINQILALIDVLKVEVNTLEK---------------EYL 450

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                T    +   +         +   +    L      +        ++ + ++   + 
Sbjct: 451  FRFYTAFTQLKTLQTEFEYFTDLKTLSQFFKQLIDSESLSFQGEPLKGLQLMGMLETRVL 510

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                      +  +    + ++  + FD  I                         +  L
Sbjct: 511  DFENVILTSANEGVLPASSQQNSFIPFDVKI-------------------------EFGL 545

Query: 675  KTAEKYIGQ-AAHDFEMANGTRHLIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLK 732
             T  +     + H F +    +++    +   +       SR++ +L +L         K
Sbjct: 546  PTYREKDAIFSYHFFRLMQRAKNIYILYNTEHDVFGSGEKSRFVTQLEMLRTDIV---HK 602

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                  +     L    K             E     +S S +   + +P A Y ++ILK
Sbjct: 603  IVSPKVVAQHTALKQVAKNNDVLE----RLKEIAKSGFSPSSLTNYLYNPIAFYKQKILK 658

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE---------INHLMKQIIDSHF 843
            +      ++       GT+ H  + EL K  + K   E            L+ +     F
Sbjct: 659  IKEFDDVEETVAYNTLGTIVHETLDELYKPFVGKFLQEENVEEMQKIAKDLIIKYFKIEF 718

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS----IEKIFVNI--PAKMAIESIGI- 896
            +  ++    + +   + ++   +FL  E  +       ++ +       A++ ++ +   
Sbjct: 719  KNGDISTGKNRLIFEVANRFVANFLTKERALLKDENNQLKIVATEENLSAEITVDGLDFP 778

Query: 897  -HLTGFADRIDLLKSGFVDITDYKTGDNPKK----------ETAQKLIDPQLSLEAAALK 945
              L G  DR+D L +G + I DYK+G                  ++    Q+ L A    
Sbjct: 779  IKLHGNVDRVDEL-NGELRIIDYKSGMVKSPELKVLDFNALREKEQYKAIQVLLYAFLYT 837

Query: 946  AGS-FSQIDCRKVANLFYIRLKQKFKI---DCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
                F      K     +  L + F          + +     E  E+ +  L E +  +
Sbjct: 838  KSKNFDFTKNLKGGIYSFKNLNEGFLSINFSSSYKNPETNITQEKLEEFISQLKEYLLEI 897

Query: 1002 QNGEQPFISHLRL 1014
             N EQ F+    L
Sbjct: 898  YNMEQEFLEPADL 910


>gi|188586471|ref|YP_001918016.1| ATP-dependent nuclease subunit B [Natranaerobius thermophilus
            JW/NM-WN-LF]
 gi|251764608|sp|B2A611|ADDB_NATTJ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|179351158|gb|ACB85428.1| ATP-dependent nuclease subunit B [Natranaerobius thermophilus
            JW/NM-WN-LF]
          Length = 1186

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 132/1082 (12%), Positives = 298/1082 (27%), Gaps = 164/1082 (15%)

Query: 59   ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELA--RLI 116
             +     E         PII  + +    +    +L   +    +S   RL  L+  RL 
Sbjct: 17   YIIDSITEQLKAAPDGDPIIFLVPEQATFQMEQAILRRSD----ISGFSRLHILSFQRLS 72

Query: 117  LIWRNKLPDIIKDLYPE---------------SPLSLPISPANAIWLAKNLADIIDIIET 161
                 +   I K    +                 L +    A     ++ L+ +I     
Sbjct: 73   QKVLEEQGGIAKADLSDTGKEMIIKNILLQRKDDLEILEKVAVKSGFSEKLSRLISEARM 132

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL-MRAEAE 220
             E   E L  +  E   +        +      +   L                 + E  
Sbjct: 133  YEITPEMLEQISQELDLIHLKQKLQEISQVFTDYETFLQHQGYHHQEDRLSKAGQKMEGN 192

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
            ++         I G +G  P   +L+  +    +   +   L             +    
Sbjct: 193  NISFLAGSTCYIDGFSGFTPQELKLLEGLLTKCSNIELALTLPPQF-------TGKIDDE 245

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
            +   + T  T+ Q     + + ++IK+       N  +    RS      F         
Sbjct: 246  LHLFHPTLKTYNQVWELAVNNDIEIKKSKHFPNENEEH----RSASSLPRFKDNPALAHL 301

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN 397
              +  +NKI       + ++++E  N R E   IA  +++ + ++    K  A+I  +  
Sbjct: 302  EKEWGKNKINPYDSEPTGLSIVEGTNLRNEIDKIAREIKLLVRDHGMRYKDIAVIVRELE 361

Query: 398  LARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
                V       + I   +    P+        L S +  +    D+  +  ++K  L  
Sbjct: 362  SYEPVIKAVFNDYKIPHFLDRKEPVHHHPLVEFLRSSVETVISNWDYEPLFRMLKTGLLP 421

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI--ATQKNNTHVPHWQSRLSE 514
                E +          ++ +  K       + +  L+R   A    N       + +  
Sbjct: 422  ISSEEIFQVENYVLAHGISGKDWKKQGKWNFIANFDLERENIAPSNRNKQYLSEINSIKG 481

Query: 515  EDKELAVLL---VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            + ++  +     +  I +  +    +K  +      LS+ + +      ++ + ++   +
Sbjct: 482  KVRDTLLEFDSKLRGINKSESLSAQFKNQEAEEDNLLSVREISTYLWELIEQLQIEYQLE 541

Query: 572  LPNLWFE------------EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
              +L  E            +   T+  L  +++      K    E++ II   +    + 
Sbjct: 542  EWSLEAEERKDFVEMQLHNQLWDTVIDLLDQMVTFLGEQKVTLSEYLQIIESGLANIKLG 601

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------ 673
                    + +     SR      L + G+++G++P     +  +    +  L       
Sbjct: 602  LLPATLDQVLVGTADRSRYHEIKVLFMAGVSDGLYPAKIDDDGIIDDRERITLRQHDVEF 661

Query: 674  LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPT-----------IASRWLQRLL 720
              T E+ + Q  +         ++ L  +    ++   T                L +  
Sbjct: 662  APTTEQKLYQEQYLIYNVLTQPSQKLYLSYPAADSEGRTMSPSTIISDIQEMFPELFQEY 721

Query: 721  VLGGTD---------------------------FFDNLKKRGQCYLDWT----------- 742
               G +                             + L +  Q  L +            
Sbjct: 722  QNDGPENDEDFRQYIIDGKKAVSNLIKLINKVGHPEKLAEDKQQLLAYLINEHPDLFYST 781

Query: 743  ---RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
               + LDY        + +    L       S S ++     P+  +A + L+L    +F
Sbjct: 782  PEIKALDYKKSLSPLTQ-EVIDKLYPNKIATSVSGLESFCQCPFRHFAEQNLRLKEREYF 840

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNT----------PEINHLMKQIIDSHFEKENLP 849
            +   +    G  +H  +     K    N             +   + +++    +   L 
Sbjct: 841  R--LEPASLGLFYHAGLKLFWDKLQENNLTWHKLKTEEREALVSEIVEVLSERLKNRILL 898

Query: 850  PHID--------IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA---------KMAIE 892
                                ++   +             +   I           ++ + 
Sbjct: 899  ASERYKYFKKKLHELLSRAVEVLSWY-----SDDKGFYPVGSEIGFGKDEPLSTLELELP 953

Query: 893  SIG---IHLTGFADRID---LLKSGFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAAL 944
            S     + L G  DRID        ++ + DYK G +           +D QL+      
Sbjct: 954  SFPNKKVQLKGRIDRIDTGKKDGDLYLRVIDYK-GKSKNLELRDLYYGLDLQLAAYMTVA 1012

Query: 945  KAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
               S      +     + Y  +      + +    K  S  +  +K    L     L+ +
Sbjct: 1013 MRNSDKLTGDQMFPGGMLYFGV-----ENPVVPTDKPVSPAQARDKLKSTLKMRGYLIDD 1067

Query: 1004 GE 1005
             E
Sbjct: 1068 EE 1069


>gi|328552684|gb|AEB23176.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus
            amyloliquefaciens TA208]
          Length = 1166

 Score =  202 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 116/1036 (11%), Positives = 264/1036 (25%), Gaps = 152/1036 (14%)

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
            E  +       I   + S   +          ++    P V+     + L +LI   +  
Sbjct: 50   ELAKTPDIGGMIRAQVFSFSRLAWRVLQHTGGMNR---PFVTTTGVQMLLRKLIEEHK-- 104

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
                           +    ++     + +  ++   +    + ED+  +        + 
Sbjct: 105  -----------HDFKVYQKASDKTGFTEQVERMLTEFKRYCIEPEDVRRMAESGTASEYR 153

Query: 183  ------LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST 236
                       L I  +     L            + L+  +           + + G  
Sbjct: 154  GERMLSEKLHDLGILYQQMERSLA--GHYLHSEDYLTLLAQQIPLADVIKGARVYVDGFY 211

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
               P   R++  +  H          D        + +       ++          Y L
Sbjct: 212  QFTPQELRVLEQLIMHAEHVTFSLTADSPSAEQAPDELDLFRMTGSTY---------YKL 262

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
             +    L+      K L                            +              
Sbjct: 263  YQTAKELNADIS-CKELHGTKR------------HQHVPELACIESQYDVRPAAVYTGGQ 309

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGIN 412
                +I+A N R E   IA  ++  + +        + LI    +    +K     +G+ 
Sbjct: 310  EAFTVIQAQNRRAELEGIAREIQSLVRDRGYRYRDMAILIRQPEDYKDLLKEVFADYGLP 369

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNAL 471
              I     +        + S L+ +     + A+    K  L      PE+ +    + L
Sbjct: 370  YFIDGKASMQHHPLIEFIRSSLDVVKGNWRYEAVFRCAKTELLFPLDQPEQKIREQVDQL 429

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
            E   +          + +  V  R  +   +      +  +     E    + + +++  
Sbjct: 430  ENYCIAYGIKGERWTNGERFVYRRFVSLDEDFAQTDQEIEMEHMLNETREWMAEPLIRLQ 489

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR--KLPNLWFEEEGKTLSSLFS 589
              L   KT ++         + T + +   +     E     +      +    +  L  
Sbjct: 490  NRLKKAKTVQSMAEALYLFLEDTDVPLKLDRKRQQAEEAGNMIEAQQHGQAWDAVIQLLE 549

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            +        + +   +  ++    +             +F+     SR+       + G 
Sbjct: 550  EFTGMMGEDEMSLALFQQMLETGTESLHFSLIPPALDQVFVGNMDLSRMYGTSCTFVIGA 609

Query: 650  NEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR--HLIYTR 701
            N+GV P    +N  LS   +       + L +A +      H    MA  +    L  T 
Sbjct: 610  NDGVLPARPDENGVLSDDDREWLKAVGVELSSAGRERLLDEHFLIYMALSSPSDRLYVTY 669

Query: 702  SLRENNIPTI-ASRWLQRLLVLGGTD---------------------------------- 726
             + +    T+  S  + RL  L                                      
Sbjct: 670  PIADAEGKTLLPSIVVNRLGELFPDHQEKLSAADPEQVSEEEQLQYLVNKQVAQTYTASQ 729

Query: 727  ---FFDNLKKRGQCYLDWTRKLDYTT---------------KQPHYKRPKPFPPLEAQPR 768
               +    +     +  +   +                   +    +RP     L  +  
Sbjct: 730  LRLWTREYEISDVWWSAYNVLMKEPDHERAKKLFSSLFFRNEAKRLERP-VSRQLYGEHI 788

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S ++      ++ +A   L+L     F    +  D G LFH+ +  +  +   +  
Sbjct: 789  KGSVSRMEAFNACQFSHFASHGLQLKERQFF--KLEAPDIGQLFHSSLKLISDRLREQKL 846

Query: 829  PEIN-----------HLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSF--LEHEEKI 874
               +             ++++     +KE L       + +    KI      +  E   
Sbjct: 847  EWRDLTKDQCRNFSYDAVERLAPR-LQKEILLSSNRHFYVKEKLQKIVTRVSGILSEHAK 905

Query: 875  QSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITDYKTG 921
             S    I + +       +  +   L         G  DR+D  +S     + I DYK+ 
Sbjct: 906  ASGFVPIGLELGFGGSGPLPPLTFTLKNGCTMELVGRIDRVDKAESSKGLLLRIVDYKSS 965

Query: 922  -DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
                        +  Q+      ++   +         A + Y  +      D +     
Sbjct: 966  DKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMKATPAGVLYFHI-----HDPMIQASL 1020

Query: 980  KYSADELSEKSLKNLI 995
                DE+ ++  K   
Sbjct: 1021 PMELDEIEQEIFKKFK 1036


>gi|297202229|ref|ZP_06919626.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148065|gb|EDY54288.2| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 1152

 Score =  202 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 137/1099 (12%), Positives = 264/1099 (24%), Gaps = 169/1099 (15%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE+           A V +   +++A  ELR       G  +   P   +        
Sbjct: 42   TLVESVASRIARGGDPARVLVLTFSRKAAVELRDRMALRIG--AARAPQATTFHSFCYAL 99

Query: 89   FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A  D  L       +S  ++ + +  L+    +        L          +     
Sbjct: 100  VRAHQDSELFVEPLRLLSGPEQDVTVRELLAGQPDLER---LGLAHVRWPDDLRACLTTR 156

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++            L A         W  AA FL         + V   A  
Sbjct: 157  GFADEVRAVLARSRELGLGPGALDAFARRIGRPDWRAAAAFLAEYLDVLDLQGVLDYAEL 216

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 +   R E    +      + +     + PA  RL+  +A    G  ++   D   
Sbjct: 217  VHRAVLLARRPEVAERLAAQYDAVFVDEYQDTDPAQVRLLHALAG--GGRTLVAFGDPDQ 274

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +                 +       A  ++ L   R     L   +  +  R   
Sbjct: 275  SIYAFRGADVNGILDFPYAFPRAD----GRAAPVEVLRTSRRSGAGLLAATRLVTQR--- 327

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
                      + +    +  ++     +    V +        E  +IA  LR +  E  
Sbjct: 328  -------MPLTRLPAEKVRAHRELAPVREGGRVEVFTYPTPGTELDNIADILRRAHLEDG 380

Query: 385  --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441
                + + L+ A       V+  LT  G+ +DI     PL      + L + L A+    
Sbjct: 381  VAWGEMAVLVRAGSRTIPTVRRALTAAGVPLDIDGDDLPLRHEPAVAPLLTALRAVATAE 440

Query: 442  DFMAIATL------------------------------------VKHPLAKFGFPEKYLS 465
               +                                                G       
Sbjct: 441  AAESGVRPEEVRPDESAASDQGAASEERSSDEEAASMTGPSAEEAASGPRPPGPRPPVEE 500

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
             A            + S       S+    + T+   T +    + +   D       + 
Sbjct: 501  AASAQPSPDDETAPEESPADSGAPSVEDCWLDTETALTLLASPLAGMDAADLRRLGRALR 560

Query: 526  HILQC-----------------ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
               +                    P      +     G   +          L N    E
Sbjct: 561  DEERAAGNALPPPSDVLLARALAEPERLAVHDPAYARGAQRLGALLGKARERLANGGSAE 620

Query: 569  HRKLPNL----WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL------------ 612
                       W     +      +        + A    +                   
Sbjct: 621  EALWDLWEGTPWPGRLERAARRGGAAGRNADRDLDAVCALFATAARAEERTGGRGALNFL 680

Query: 613  -------IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                   I  +T+  +  +   + ++    S+ L +  +++ G+ EG+WP    +   L 
Sbjct: 681  EEIDAEDIAADTLTRRAVRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLE 740

Query: 666  RVMQSDLNLKTAEKYIGQAA----HDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLL 720
                    L          A      +  A   R  L+ T      +     SR+L  L 
Sbjct: 741  ADRIGRDGLAEPLTPGALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELG 800

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK----------------------RPK 758
            V           +R         +L  TT  P                         RP 
Sbjct: 801  V--EPKDVTGRPRRPLSVAALVAELRATTVDPRVSDTLREAAARRLARLAALADEDGRPL 858

Query: 759  PFPPLEAQPRT-------------------YSFSEIKQLIN-DPYAVYARRILKLDFIPH 798
                   +                       S S + QL N      +  R +K D    
Sbjct: 859  VPSAHPYRWWGMFEPTESKVPLRNRDQPVVLSGSALDQLANTCALQWFLGREVKADAPAT 918

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
                      G + H +  E+       +   +   +   + +    +            
Sbjct: 919  V-----AQGFGNVVHVLADEVASGHTPADLAVLMERL-DSVWNALAFDAPWKSAQEKENA 972

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI--GIHLTGFADRIDLLKSGFVDIT 916
                    FL+     ++    +       + +E+    + + G  DR++    G   + 
Sbjct: 973  RV--ALERFLKWHVMDRTGRTPVASEHDFDVTLEAGEVEVRIRGQMDRVEADAEGRAYVV 1030

Query: 917  DYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKID 972
            D+KTG  P      +    PQL++   A++ G+  +       +      ++L+Q     
Sbjct: 1031 DFKTGKQPVSSAEVEHH--PQLAVYQLAVREGAVDEAFDGVRPEPGGAELVQLRQGAPKR 1088

Query: 973  CITNDKKKYSADELSEKSL 991
                   K  A E  +   
Sbjct: 1089 DGGETLPKVQAQEPLQGEW 1107


>gi|297584274|ref|YP_003700054.1| ATP-dependent nuclease subunit B [Bacillus selenitireducens MLS10]
 gi|297142731|gb|ADH99488.1| ATP-dependent nuclease subunit B [Bacillus selenitireducens MLS10]
          Length = 1157

 Score =  202 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 140/965 (14%), Positives = 288/965 (29%), Gaps = 146/965 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKY 194
              +             L  +I   +   +  ED+ A+  ++            L +    
Sbjct: 106  FRVFEHATGTAGFIDKLESMITECKRYNQSAEDIEAMAEDESLPVGLKDKLYDLSLIMNK 165

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
             +E+   +  +       +L   + ++     +  I + G     P     +  +     
Sbjct: 166  ISEQTASVRLA--SEDDFSLAIEQVKYSEMLKEAMIAVDGYHHFSPLEEAFLHELMTSSK 223

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT-----YSTHPQYSLAKLLDFLDIKRED 309
              I+   LD          +        ++NT       + H Q  L   + F +  R  
Sbjct: 224  QVIMALTLDKLPSAD--EELDPFDLFFETANTAQRTLIAANHLQIGLKPAVHFEERTRFQ 281

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
             K L ++      R                           +     S V ++ A N+R 
Sbjct: 282  KKGLRHLEAMSNQR-------------------------PADPSDDHSGVNIVAAVNKRA 316

Query: 370  EAISIAIALRMSLDE---NKKKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTL 425
            E   IA  +R  + +     K  A+++ + +  R  ++       I + + A        
Sbjct: 317  EIRFIAREIRRLVRQENYRYKDFAVLSRNPDDYRDLIEHIFEEEQIPVFVDAKRSAIHHP 376

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                + SLL+ + K   +  +   +K  L      +       +  E + L    N Y  
Sbjct: 377  LIEFVRSLLDIVSKNWRYDDVIRCLKTELTFPI-DQSVTREHLDTFENITLALGLNGYQW 435

Query: 486  MDLKSL----VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
             D +         R A +    H       L +   +  +   D I      + +     
Sbjct: 436  YDYEQWNKRLQFYRAAKEGEEDHTITLMHDLHKIMVDPLIQFHDKITSQ-NTVNSIIEAL 494

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
             +    LS+ +          +  LD+ R       ++  K L S+F +  E     K N
Sbjct: 495  FNLLVALSVPEKLASFR----DQALDKGRLQEARDHDQIWKELISIFDQASEACGQDKMN 550

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
             I + +++   ++  +          +       SRL +     L G N+GV P    ++
Sbjct: 551  PITFNNMLDTGLESISYSIIPPALDQVVAASMATSRLSDISCTFLIGANDGVIPMPAEES 610

Query: 662  PFLSRVMQSDL------NLKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIPTIAS 713
             F+S   +  L          AE+ +    +    A  +    LI +  L ++       
Sbjct: 611  AFMSDRERVTLLESGHELAPAAERQLLNEQYLVYQAQTSPKDRLIISYLLSDDEGKAKQP 670

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY------------TTKQPHYKRPKPFP 761
              +   +          +       LD + + DY            T +   +KR  P P
Sbjct: 671  SIILNHVKEMFPALKTEIAVESPADLDISDEDDYFISSPEGTQSFLTERLQRWKRGYPLP 730

Query: 762  PLEA------------------------------------------QPRTYSFSEIKQLI 779
             +                                            Q  T S S ++Q  
Sbjct: 731  DIWWSVYNWYMSERTYAPTVRTSLTSLFYDNNPGSLSKTAARGLYGQKMTASVSRLEQYY 790

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEIN 832
            +  +  +A   L+L    +F+   D  D G LFH+ + EL      +         PE  
Sbjct: 791  SCAFKQFANYGLRLREREYFR--LDAPDIGILFHDALKELTANLKQEGRSFTELSEPEAV 848

Query: 833  HLMKQIIDSH---FEKENLPPHIDIIW-RHLFHKIS--HSFLEHEEKIQSSIEKIFVNIP 886
               K I+++      +  L     + +      ++    + +  E+  ++  +   V + 
Sbjct: 849  RRSKNIVENLAPKINRNILKSSFRLRYILSKLEQVVIRAAMILMEQAKRTGFQPEAVELG 908

Query: 887  A---------KMAIESI-GIHLTGFADRIDL--LKSG-FVDITDYKTGDNP-KKETAQKL 932
                         ++    + L G  DR+D      G ++ + DYK+             
Sbjct: 909  FGTGSDLPPLSYTLDDGTTVELAGRIDRVDSANTPEGFYIRVIDYKSSKTDLSLSDVYYG 968

Query: 933  IDPQLSLEAAALKAGS--FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
            +  Q+ +   A+   +  FS  +    A + Y  +        I +D  K + +E +++ 
Sbjct: 969  LAMQMLVYLDAIMKNAAYFSNGEDVIPAGMLYFHVHN----PVIKSDSGKLTPEEAAQRM 1024

Query: 991  LKNLI 995
            LK   
Sbjct: 1025 LKEFK 1029


>gi|308173039|ref|YP_003919744.1| ATP-dependent deoxyribonuclease subunit B [Bacillus amyloliquefaciens
            DSM 7]
 gi|307605903|emb|CBI42274.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus
            amyloliquefaciens DSM 7]
          Length = 1166

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 116/1036 (11%), Positives = 263/1036 (25%), Gaps = 152/1036 (14%)

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
            E  +       I   + S   +          ++    P V+     + L +LI   +  
Sbjct: 50   ELAKTPDIGGMIRAQVFSFSRLAWRVLQHTGGMNR---PFVTTTGVQMLLRKLIEEHK-- 104

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
                           +    ++     + +  ++   +    + ED+  +        + 
Sbjct: 105  -----------HDFKVYQKASDKTGFTEQVERMLTEFKRYCIEPEDVRRMAESGTASEYR 153

Query: 183  ------LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST 236
                       L I  +     L            + L+  +           + + G  
Sbjct: 154  GERMLSEKLHDLGILYQQMERSLA--GHYLHSEDYLTLLAQQIPLADVIKGARVYVDGFY 211

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
               P   R++  +  H          D        + +       ++          Y L
Sbjct: 212  QFTPQELRVLEQLIMHAEHVTFSLTADSPSAEQAPDELDLFRMTGSTY---------YKL 262

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
             +    L+      K L                            +              
Sbjct: 263  YQTAKELNADIS-CKELHGTKR------------HQHVPELACIESQYDVRPAAVYTGGQ 309

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGIN 412
                +I+A N R E   IA  ++  + +        + LI    +    +K     +G+ 
Sbjct: 310  EAFTVIQAQNRRAELEGIAREIQSLVRDRGYRYRDMAILIRQPEDYKDLLKEVFADYGLP 369

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNAL 471
              I     +        + S L+ +     + A+    K  L      PE+ +    + L
Sbjct: 370  YFIDGKASMQHHPLIEFIRSSLDVVKGNWRYEAVFRCAKTELLFPLDQPEQKIREQVDQL 429

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
            E   +          + +  V  R  +   +      +  +     E    + + +++  
Sbjct: 430  ENYCIAYGIKGERWTNGERFVYRRFVSLDEDFAQTDQEIEMEHMLNETREWMAEPLIRLQ 489

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR--KLPNLWFEEEGKTLSSLFS 589
              L   KT ++         + T + +   +     E     +      +    +  L  
Sbjct: 490  NRLKKAKTVQSMAEALYLFLEDTDVPLKLDRKRQQAEEAGNMVEAQQHGQAWDAVIQLLE 549

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            +        + +   +  ++    +             +F+     SR+       + G 
Sbjct: 550  EFAGMMGEDEMSLALFQQMLETGTESLHFSLIPPALDQVFVGNMDLSRMYGTSCTFVIGA 609

Query: 650  NEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR--HLIYTR 701
            N+GV P    +N  LS   +       + L +A +      H    MA  +    L  T 
Sbjct: 610  NDGVLPARPDENGVLSDDDREWLKAVGVELSSAGRERLLDEHFLIYMALSSPSDRLYVTY 669

Query: 702  SLRENNIPTI-ASRWLQRLLVLGGTD---------------------------------- 726
             + +    T+  S  + RL  L                                      
Sbjct: 670  PIADAEGKTLLPSIVVNRLGELFPDHQEKLSAADPEQVSEEEQLQYLVNKQVAQTYTASQ 729

Query: 727  ---FFDNLKKRGQCYLDWTRKLDYTT---------------KQPHYKRPKPFPPLEAQPR 768
               +    +     +  +   +                   +     RP     L  +  
Sbjct: 730  LRLWTREYEISDVWWSAYNVLMKEPDHERAKKLFSSLFFRNEAKRLDRP-VSRQLYGEHI 788

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S ++      ++ +A   L+L     F    +  D G LFH+ +  +  +   +  
Sbjct: 789  KGSVSRMEAFNACQFSHFASHGLQLKERQFF--KLEAPDIGQLFHSSLKLISDRLREQKL 846

Query: 829  PEIN-----------HLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSF--LEHEEKI 874
               +             ++++     +KE L       + +    KI      +  E   
Sbjct: 847  EWRDLTKDQCRNFSYDAVERLAPR-LQKEILLSSNRHFYVKEKLQKIVTRVSGILSEHAK 905

Query: 875  QSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITDYKTG 921
             S    I + +       +  +   L         G  DR+D  +S     + I DYK+ 
Sbjct: 906  ASGFVPIGLELGFGGSGPLPPLTFTLKNGCTMELVGRIDRVDKAESSKGLLLRIVDYKSS 965

Query: 922  -DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
                        +  Q+      ++   +         A + Y  +      D +     
Sbjct: 966  DKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMKATPAGVLYFHI-----HDPMIQASL 1020

Query: 980  KYSADELSEKSLKNLI 995
                DE+ ++  K   
Sbjct: 1021 PMELDEIEQEIFKKFK 1036


>gi|291333832|gb|ADD93515.1| hypothetical protein GB2207_01992 [uncultured marine bacterium
            MedDCM-OCT-S04-C13]
          Length = 890

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 118/700 (16%), Positives = 216/700 (30%), Gaps = 70/700 (10%)

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-KKSAL 391
            PP    +        +    Q    D  L+   + ++E I+        L +N  ++  L
Sbjct: 193  PPLQQAVIAQATDCQQPITPQPVDGDGWLVACADPQQELIAATQWAAQQLADNPNQRIGL 252

Query: 392  ITADRNLARRVKLELTRF-------GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
            +  + + +      LT          + ++ISAG  L  T        LL          
Sbjct: 253  VIPELDHSLAQVSRLTAESLTEKGVDVAVNISAGTSLLETTLVRSAVELLGIFQYQRPLS 312

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
                L+  P + F      +         + L   K       L+  +    A  + + H
Sbjct: 313  QWLELLYSPYSVFSQLPMQVL------VDIELAVRKCKAFDFTLERFLNHVSAAVRLSPH 366

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                           A  +   +         ++ N        S S W       L ++
Sbjct: 367  ---------------ADSIAVQLKSIFECRSNHRKNNKIR---QSFSQWRAFFECSLSDL 408

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                H KL    +++       L          I+         + + +  + V      
Sbjct: 409  GWPGHHKLNTFEYQQREHWQRLLEQFCRLDNLGIEVGLTTARKHLVQ-MAQDAVFHPQTG 467

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIG 682
             + L ILG LE   L FD L + G++   +P     NP L    Q    +     E+ + 
Sbjct: 468  DAPLQILGLLEGAGLKFDQLWILGMHSQNFPAAVNINPLLPADFQRCHAMPHSLPERELN 527

Query: 683  QAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
             A   +       R LI +  L        AS  +  +  +       N++++       
Sbjct: 528  IAKALWRDYRSNARRLIASYPLLRGEEQLTASPLVLDVTRVALDQLVGNIRRQP------ 581

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
               L+   +             E +        +K   + P+  +A   L  + +     
Sbjct: 582  -HWLERPDETELVAEATIAYNPEREKIKGGSMLLKNQSSMPFNAFAIHRLWAEPLQQPIA 640

Query: 802  DPDRTDRGTLFHNIITELIKKRINK------NTPEINHLMKQIIDSHFEKEN------LP 849
                 DRG L H+I+  L  +  N       N  +I+  ++Q+I+             L 
Sbjct: 641  GLTAKDRGILLHDILYRLWGEWRNAAHLHSLNEQQISDALEQVIEQSLTALGTQHPVLLG 700

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909
                 +      K+  ++L HE+    + + I     A +    + I L    DRID + 
Sbjct: 701  SRFRQLEHSRLQKLIIAWLTHEKSR-PAFDVIGREQVASVDFGDLQITL--RLDRIDQI- 756

Query: 910  SGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAA----LKAGSFSQIDCRKVANLFYIR 964
             G   + DYK+G+  P      +  DPQL L   A        +F+QI    +    +I 
Sbjct: 757  DGQSLVIDYKSGEVTPSHWQGDRPKDPQLPLYIMATNPQASGCAFAQIKGGNIK---FIG 813

Query: 965  LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004
            + +    D         +  E  E+  K L  +     +G
Sbjct: 814  IGESSFFDQQAV---IDNWPEQREQWRKALSNLAREFSSG 850


>gi|226325450|ref|ZP_03800968.1| hypothetical protein COPCOM_03255 [Coprococcus comes ATCC 27758]
 gi|225206193|gb|EEG88547.1| hypothetical protein COPCOM_03255 [Coprococcus comes ATCC 27758]
          Length = 1034

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 113/917 (12%), Positives = 253/917 (27%), Gaps = 143/917 (15%)

Query: 151 NLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
            +  +I  +       + +   +       +       +++  + + E L +   +    
Sbjct: 121 EVKSVISELTQYNISPDGMDDMITEADESSYLAWKLKDIQVMYQAFEEYLADKYIT--KE 178

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             + ++    +         I++ G TG  P   +++  + +H    ++   +D      
Sbjct: 179 EILDILCNVMDKSRMLKDSVIVLDGFTGFTPLQNKVLGEMLHHCQKVMITVTMD--KRED 236

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
            +    +      S     S        K+L    +                        
Sbjct: 237 PYVMKDKYQLFALSKQMVTSLVKIAGEEKVLVEEPVCLYQEPVW---------------- 280

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENK 386
            F           ++        ++  S+V +  A N R E    A  +R      +   
Sbjct: 281 RFKNAPALAFLEKELFRYSGRTYREKQSNVRVYAAANPRMEVECAAQRIRFLIRKKEYRY 340

Query: 387 KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
           ++ A+I +D NL           + I + +     +        + SLL    +     +
Sbjct: 341 REIAVIASDMNLYADEIEKIFREYEIPVFMDYKRNVLLNSFVEYIRSLLAMAEQNFSAES 400

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           +   ++  L  F   E  L                    I   K      I   K+ T  
Sbjct: 401 VFRFLRTDLVGFTGEELDLLENYVLAL-----------GIRGYKKWQEKWIRRAKDTT-- 447

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-------DWTKLTV 558
                   EE+ E+   L    ++    LV     +  T  +++++       +  +  V
Sbjct: 448 --------EEELEVLNHLRVCFVEKTEDLVFVLKQRQKTVRDVTLAICEFLEKEEIQKQV 499

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
             L+N   +         + +  + +  LF K +      +    E+ +++   ++   +
Sbjct: 500 KVLENQFTEAGELALAKEYAQIYRVVMELFDKFVSLLGDERIALKEYRELLDAGMEEARI 559

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                    +       +RL +   LIL G+N+ + P N +    +S   +        E
Sbjct: 560 GVITPSLDEVMAGDIERTRLKDIRALILLGVNDSLIPGNASAGGLISDRDRERFE----E 615

Query: 679 KYIGQA------------AHDFEMANGTRHLIYTRSLRENNIPTIASRWL---------- 716
           + I  A                 M   T  L+ T S    +  +  + +L          
Sbjct: 616 RGIALAPGTREKSYIQKFYLYLHMTKPTEELMLTYSKVSADGKSRRAAYLIGDLKRMYTK 675

Query: 717 ----------QRLLVLGGTDFFDNLKKRGQ------------------CYLDWTRKLDYT 748
                          +       +L +  Q                     DW  K+   
Sbjct: 676 LSVFNMDQYGMETKEMLPQTGIGSLIEGLQNPKKMEEGSWQELYRWYCAQEDWNEKVHDL 735

Query: 749 TKQPHYKRPK-----PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
            +   Y+RP+                 S S +++      A +    L+L        + 
Sbjct: 736 ARINRYRRPEDNLTLQTARKLYGDWAPSISRLEKFAACACAHFLTYGLRLKERE--VYEF 793

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEIN---HLMKQIIDSHFEKENLP--------PHI 852
              D G +FH  + +  ++   +            +Q      ++  +            
Sbjct: 794 AALDFGNIFHKALEKYARRVEREGLEWTEVTKEQQEQFASESVDESIVDYSNTVIYSSAR 853

Query: 853 DIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID--LL 908
           +        ++ +   +   ++  + S +     +             +G  DRID    
Sbjct: 854 NAYIVPRMKRMMNRTVWAMTKQLRKGSFKPEGYEVSFG----------SGKIDRIDTCET 903

Query: 909 KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIR 964
           +      I DYKTG            +  QL +           +   +K   A +FY R
Sbjct: 904 EDQVYVKILDYKTGAKSFDMAAFYHGLQMQLVVYMEEAVRLEERKHPGKKIVPAGIFYYR 963

Query: 965 LKQKFKIDCITNDKKKY 981
           +K       +  +K   
Sbjct: 964 MKDPIVGKELDEEKTGR 980


>gi|153812829|ref|ZP_01965497.1| hypothetical protein RUMOBE_03236 [Ruminococcus obeum ATCC 29174]
 gi|149831041|gb|EDM86130.1| hypothetical protein RUMOBE_03236 [Ruminococcus obeum ATCC 29174]
          Length = 1109

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 107/925 (11%), Positives = 245/925 (26%), Gaps = 135/925 (14%)

Query: 150 KNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
             +  +I      E + E+L   +++        +    + +  + + E L +   +   
Sbjct: 120 DEVKSLISEFMQYEVRKEELDKMIQDASDKPLLQMKLKDVAVLYEAFREYLSDHFMT--A 177

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              + ++  E     K     +++ G TG  P    ++  +        V   +D     
Sbjct: 178 EEVLEVLAKEIPFSEKLKGSTVVLDGYTGFTPVQHTVIRELLQVCEHVTVTVTMDV---- 233

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
                  +           Y +H      K++  L     D+K       E         
Sbjct: 234 -----REQLLAKGKPHELFYMSH------KMIRSLSEFTRDMK-------EPIWVKAGAE 275

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE----AISIAIALRMSLDE 384
             F      +    ++         +   +V + +A N   E    A  I+  +R     
Sbjct: 276 SRFAKAPALNFLEQNLFRYHRGAYNEEQKEVQIFQAGNPEREMEETARRISRLVREHGYR 335

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
             + + +           +       I   +     +        L + L    +   + 
Sbjct: 336 YGQIAVITGNLEEYGSIARHVFDAAEIPFFVDEKHSVLMNPFVEYLRAALEMTVQGFSYE 395

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA-TQKNNT 503
           ++   ++  ++     E  +                 +  I   +      +   +  + 
Sbjct: 396 SVFRYLRCGMSDLSRREVDILENY-----------VIALGIRGFRKWNETWVRIYRGMDP 444

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
            V    + + E   E    L +        +  Y            I +  K+     + 
Sbjct: 445 AVIMDLNEIREHFTEEVRELAEGFSGKKKTVGEYSRYLYDFIVKRQIQEKLKVQELHFKQ 504

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                  K     + +    +  L  K++        +  E+  ++   +    V     
Sbjct: 505 QGDRAREK----EYAQIYGIIMDLLDKMVSILGEEVVSPEEFRQLLETGMTQAKVALIPP 560

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTA 677
               + I     +RL +   L   G+NEG  PKNT     L+ + +  L           
Sbjct: 561 GIDQVLIGDMERTRLKDIRALFFVGVNEGCIPKNTESGGILTEMDRDFLGNQGIELAPGP 620

Query: 678 EKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
           ++ +        +     +  L  + S        +   +L R +     +      ++ 
Sbjct: 621 KELMNMQRFYLYLNLTKPSESLCLSYSRSNGKGEAVGPAFLIRTIQTLFPEIHIERAEKP 680

Query: 736 QCYLDWTRKLDYTT----------------------------------------KQPHYK 755
           +  LD     + +                                         +    +
Sbjct: 681 EKELDLLETPNTSVGYLLENLTDEEKRKENQLFAELYSWYLNSPDYCTMTKKLTEAAFLR 740

Query: 756 RP------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
           +P           L  +      + +++     +A + +  L+L      + +    D G
Sbjct: 741 KPVDQISKSVAKALYGEISPNGATRLERFSACAFAHFLKYGLELTER--AEYEFRAMDMG 798

Query: 810 TLFHNIITELIKKRINKNT---PEINHLMKQIIDSHFEKENLP--------PHIDIIWRH 858
            + H  + E   +   K        +     I D+  +K               +     
Sbjct: 799 NIIHQALEEFAVELRQKQLNWRELSDEERDTIADNCLDKIAADYGNTILQSSARNYYMIE 858

Query: 859 LFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD-- 914
              +I     +   E+      E     +     I        G  DR+D+++       
Sbjct: 859 RTRRILRRTVWALQEQLKNGRFEPEGFEVA----IGG------GRIDRLDVMQEEDRVYV 908

Query: 915 -ITDYKTGDNP-KKETAQKLIDPQLSLE--AAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
            I DYKTG+      +    +  QL +   AA             + A +FY  +K    
Sbjct: 909 KIIDYKTGNTSFDLVSIYYGLQMQLVVYMDAAMQAEQRKHPDCQVRPAGIFYYNVK---- 964

Query: 971 IDCITNDKKKYSADELSEKSLKNLI 995
            D +   + +   DEL  +  K L 
Sbjct: 965 -DPMLQKEMEEDLDELDPEIFKKLK 988


>gi|229496673|ref|ZP_04390387.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
            35406]
 gi|229316570|gb|EEN82489.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
            35406]
          Length = 1020

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 151/1094 (13%), Positives = 322/1094 (29%), Gaps = 207/1094 (18%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L       P++RA    R E  +    + +  P I ++  + E+               
Sbjct: 24   ELHQCCFVFPSQRAGTFFRYELSKRL-TQPSFSPQIITVESLTEKLSGLKSAQR------ 76

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                Q++  L R I+  R +L           PL    +P      A+ L    + I+  
Sbjct: 77   ---TQQVCLLYREIVTLREELG---------FPLDEKSNPHLPFDHAEKLLSDFNDIDNY 124

Query: 163  EKKWED----LHALKN------------------------------EKYGMWWLLAADFL 188
              + ++    L AL +                              E+    +      +
Sbjct: 125  LVEPDEIFHNLKALDDLTSLDYISPEQKEAIEIFFGYLSKVNSDKKERLEELFSAMTTEM 184

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  L               + E   +  +            P+   ++  
Sbjct: 185  QLLYHRFRATLESLGLGYSGMLARRAAELDEETFDRNLQKL--------LSPSVRHIIVA 236

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
                  G   L   +  I   +  T    ST+        + H                 
Sbjct: 237  ------GLYHLSTAEREILKRLKRTNNHYSTSFYWEEVKLANH-------------TTPS 277

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
            D   L                      T      ++    +   +K    + +++  ++ 
Sbjct: 278  DWGFLIG-------------------KTMQESKQELGGEWLSTQEKGVPKIDIVQIPSDI 318

Query: 369  EEAISIAIALRMSLDENKKKS-----ALITADRNLARRVKLELTRFGINIDISAGIPLST 423
              +  +   L+  + +  +       A+   + N    +   L      I+I+ G PL  
Sbjct: 319  GRSKLVPTLLQELIGDAPRAVEDLQCAIALPEVNTLLPLLDALQGISHPINITMGYPLHL 378

Query: 424  TLHSSILTSLLNAIF--------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            +  +  L   +            +L    A+  L+KHPL+             +      
Sbjct: 379  SSVAVWLHRYIELQQFTRWSEKGELLPLDALEHLIKHPLSN--------LLVSSEELSPL 430

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                + +Y  +D + +             +         E      +L+  ++  +  L 
Sbjct: 431  NEALRYNYYYIDYQKICALYPQDLPEPLRLLI-------EPISDKSVLIQRLITLLNRLA 483

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
            +    +       + S      V  ++ +          + F ++ + L      ++   
Sbjct: 484  SLL-QEEDNDAEEADSKAEAGHVHYIRVL---------EIEFVKKLRDLVIQVGNLLPLM 533

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                A       ++ +L++ ET+  + E    L I+G LESRL+NFD LI+   NEG  P
Sbjct: 534  GD-TAERTILYRLLFKLVEEETLPFEGEPLEGLQIMGFLESRLINFDYLIIPESNEGALP 592

Query: 656  KNTAKNP-FLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIAS 713
                 N  ++   ++   N+ T +      A+ F       R + +     ++      S
Sbjct: 593  HKRPINRGYIPYNVRLGYNMPTYQSDDYTEAYYFYRLISRARRVFFIV---DSRSEKEPS 649

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-HYKRPKPFPPLEAQPRTYSF 772
            R+L +L  L      ++  K         + +    +      R       +   +  S 
Sbjct: 650  RFLAQLRYLFHLTPQEHTVKVSMLATQTPKIVIPKDEAAMTVLREYTTSNRDDIKKALSA 709

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK------ 826
            S +      P   Y + I ++  I          D GT+ H+++  L +    K      
Sbjct: 710  SSLSTYALCPLQFYYKYIRQIPEIEERTDLLSPGDFGTVIHDVMQHLYEPYEGKLLSSQD 769

Query: 827  -----NTPEINHLMKQIIDSHFEKENLPPH---------IDIIWRHLFHKI--SHSFLEH 870
                 +       +  I++S++ +  L  +           +  R +  ++     F   
Sbjct: 770  YEWLIDPHTSLPRISTIVNSYYAQNVLHQNSTPKEIEGMHQMYIRMIMEEVYAVLKFDAQ 829

Query: 871  EEKIQSSIEKIFVNIPAKM--AIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGD---- 922
              +    +  +       M   +    I +   GF DR+D +  G + I DYKTG     
Sbjct: 830  YIRRGHQLAYVASEQRIDMIEPLPELGIDVRFKGFIDRLDEV-DGLLRIVDYKTGSDSQT 888

Query: 923  ---------NPKKETAQKLIDPQLSLEAAAL---------KAGSFSQIDCR--KVANLFY 962
                       +K   +K I  Q+ L + A+         +    + +  R  +V    Y
Sbjct: 889  FKDWNQLYFAQEKSQHRKAIA-QIFLYSEAVLRLVENGRAQQEGLNWLQPRHNRVQPSLY 947

Query: 963  IRLKQ----KFKIDCITNDKKKYSADELSEKSLK----NLIEIVTLLQNGEQPFISHLRL 1014
             +LK     K   + +    +    D  + +        L E++  L + + PF      
Sbjct: 948  -QLKGMCSNKESYNPLIRFNQTEIEDYATSEIRDSYCHELHEVLLRLFSPDVPFA--QTE 1004

Query: 1015 SEKSNIQSEYDHLA 1028
             E++     +  + 
Sbjct: 1005 DEEACRYCAFKAIC 1018


>gi|119963788|ref|YP_948453.1| ATP-dependent DNA helicase (UvrD/REP) [Arthrobacter aurescens TC1]
 gi|119950647|gb|ABM09558.1| putative ATP-dependent DNA helicase (UvrD/REP) [Arthrobacter
            aurescens TC1]
          Length = 1118

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 140/1092 (12%), Positives = 277/1092 (25%), Gaps = 160/1092 (14%)

Query: 24   ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
             +L  + V   R D L+P     + +  P + A   LR  F     +  +  P  ++   
Sbjct: 59   TVLVESAVRRVREDGLDPE---QILVLAPGRHAAAALRDTFTGRLDRSLSTTP-ARTWAS 114

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
               +              P++   +LL      LI +  L    +  +         +  
Sbjct: 115  YAFDVIRRAKAEGI---LPLTRPPKLLSGPEQDLIIKELLEGHSRPGFQLPWPEDLTAAL 171

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                    +  + D I    +  EDL  L  E     W+ AA+           R+ E  
Sbjct: 172  PTRGFRHEIRQLFDRIIESGRTAEDLVGLAYECGRPDWMAAAELYSEYRDVLDLRMPE-- 229

Query: 204  ASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
            A  P G      +   +        +     I++  +  S PA   L+   A+   G  V
Sbjct: 230  AFDPAGIITTARQIFQDSPEFLAAERQRLQLILVDDAQESNPAVFELL---ADIGEGKDV 286

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
            +           +        +   S    +         L   L +       +     
Sbjct: 287  VVTYSPDTVVQGFRGARPDLVSELPSLLGGTQQ-----KVLERPLSVTHRHTPEVAEAWT 341

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
             + GR   IS+         M      E            V      +   E   +A  +
Sbjct: 342  RVAGR---ISQRSGGQLARQMEQPQRPEGTGQATTSDHGRVEGHVLPSAVHELRYVAQRI 398

Query: 379  RMSLDENKK---KSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLL 434
              +     +     A+I  +     +++  L+  GI + +  A   +   +    L    
Sbjct: 399  LEAQLRESREFSDIAVIVRNGGQISQLQRYLSGQGIPVRVPVADSAVRDEVAVRPLLEAF 458

Query: 435  NAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
              +            +L+   +      E    R     E ++  G ++S          
Sbjct: 459  AIVLDPGKLTPETAVSLLTSRIGGATAIELRRLRQSLRREELSGGGGRSS---------- 508

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                A        P   + L  E      L                  ++        + 
Sbjct: 509  ---DALLVEALLQPGALASLGIEGSSARRLARMIAAGTAAAAEPGANAESVLWALWHATG 565

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
             +               R   +L         +  F   +               ++ + 
Sbjct: 566  LSSRWTETALEGGNAGARADRDLDAMMALFHTAERFVDQLPGSG----PEQFLDYLLNQE 621

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            +  +T+  + +  + + I+    +    +  +I+ GL EGVWP    +   L   + +D 
Sbjct: 622  LPMDTLAARAQLEACVEIMTPASAAGREWPVVIVAGLQEGVWPNTRLRGELLGSTVYADA 681

Query: 673  -----------NLKTAEKYIGQ--AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
                          +  + I            +  R ++   ++   +     S +L  +
Sbjct: 682  VEHGVDYALKRGPLSRLRDIRYDELRSFSTAVSRAREVLICTAVSSEDE--QPSAFLDYV 739

Query: 720  LVLGGTD--FFDNLKKRGQCYLDWTRKLDYTTKQPHY--------------------KRP 757
              LG  +         R         +L    +                          P
Sbjct: 740  APLGSGEYKRDYTPVDRPMTLRALVAELRQHAQSEDAGTGINGTAHEAARILARLAGTEP 799

Query: 758  KPFPPLEAQPRTY------------------SFSEIKQLINDPYAVYARRILKLDFIPHF 799
                                           S S+++ +   P   + +           
Sbjct: 800  AVPGAHPDSWWGLAALSSYEAVVPAGGTVSVSPSKVEAVHKSPLDWFVQAAGGEAATDF- 858

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
                     GTL H+I  EL     + +  E    + +   +   K+N       +    
Sbjct: 859  -----ARSLGTLVHSIAQEL----PDASGAEYVAELVRRWPTLGMKDNWEG---KLDFQR 906

Query: 860  FHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIESIGI-------------------HLT 899
               +     ++           + V    ++ +  I +                    L 
Sbjct: 907  AELMVRKLAQYVLIMRSEGRSLLAVEHDFEVQLPDIAVNAGGTGDPHAPDEEAVRHAVLR 966

Query: 900  GFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK-- 956
            G  DR+++   G + I D KTG   P K    K   PQL    AA+  G+F     R+  
Sbjct: 967  GQVDRLEIDPEGRLVIVDLKTGKRQPGKAEVAKH--PQLGAYQAAVLRGAFLDAGTREET 1024

Query: 957  --------------VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
                                 +L  K K   +       S D       ++L+     L 
Sbjct: 1025 NDAGSLAGSGHGFVPGGAVLAQLGTKTKSPAVQQQDPLDSTDN----WAESLVNEAAALM 1080

Query: 1003 NGEQPFISHLRL 1014
             G   F +    
Sbjct: 1081 AGAT-FEARHDP 1091


>gi|300857961|ref|YP_003782944.1| hypothetical protein cpfrc_00543 [Corynebacterium pseudotuberculosis
            FRC41]
 gi|300685415|gb|ADK28337.1| hypothetical protein cpfrc_00543 [Corynebacterium pseudotuberculosis
            FRC41]
          Length = 1074

 Score =  200 bits (509), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 116/1044 (11%), Positives = 265/1044 (25%), Gaps = 181/1044 (17%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTI--LPIIKSLGDVVE------------EKFTA 91
             +     T++A Q+L         + + +  L  I   G++              + +  
Sbjct: 63   RILGLTFTRKAAQQLSQRIRGRLEQLAGMDALRDIDPSGELSYKLEAIAPTVSTYDSYAG 122

Query: 92   DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
             L+  Y L  PV    RL+    L  I  + + +    L  ++               + 
Sbjct: 123  SLIREYGLLLPVEPTSRLITETELFQIAYDIVINYSGSLDTQTQPVNA---------TEK 173

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYG--------------------MWWLLAADFLKIA 191
            L  ++  I+      +D+    +                            +    +   
Sbjct: 174  LLSLVSEIDNHIVSPQDIVEETDAFLSVLDDVEAASKRGLNQILIGWKQRQIIRKQMLPM 233

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLM 246
                 + L   N  +         R   E        +     +++     +  A   L+
Sbjct: 234  VAMLKQHLAYNNLMTFGEQMSLAARLAEENPQVGASQRDRYSVVLLDEYQDTGHAQRVLL 293

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
             ++ +   GA V    D       W   T  +      +                 L  +
Sbjct: 294  RSLFS---GAAVTAVGDPMQSIYGWRGATSANLERFREDFA---------------LGEE 335

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                + L            + ++       +       ++           +V L    +
Sbjct: 336  PAQKRELTVSFRNPPEVLQLANEVSREVLGAPDNPRRTVQPLSSREGAPHGEVTLGFFPS 395

Query: 367  EREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
              +E   +A  L  +     +   +A++   +  +  + LEL   G+ ++I     L   
Sbjct: 396  AEKEREFVADQLAEAYKNRGESFTAAVLVRKKRHSAPIALELQSRGVPVEIVGLSGLIDI 455

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
               + L ++   + +  D  +   ++  P    G  +      + A      +  +    
Sbjct: 456  PEVADLIAIAAMLIRPQDTKSALRILAGPHVGLGAADILALADRAANLAGRGKAEREEKK 515

Query: 485  IMDLKSLVLDRIATQKNNTH-----VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
               L+ L      T                      ++  A    D  L+ +  L +   
Sbjct: 516  TDPLERLEQIIAETLPKAPESVVGLAEAVADLDVPREEGAATRYSDEGLRRLQLLASELR 575

Query: 540  NKNSTCGNLSISDW---TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
               +     S+ D     +        V   E                + + S      +
Sbjct: 576  YLRTHSLGHSLPDLFADIERVFGIRTEVLQREDPHSDGAPGTVHLDRFAEVISDFARVPN 635

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
               +  ++++++     DG        +S  + IL   +++ L +  + +   +   +  
Sbjct: 636  ATLSQFLDYLELSRSQGDGLEPGEVQVRSDRVQILTVHKAKGLEWQIVSVMHADSSTYKT 695

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKY-----------------------------------I 681
             T+        + S L     E                                      
Sbjct: 696  TTSTWLSNESAVPSALRGDAREDDSLVGAPVWYIDSAESPADLKKQGEAHIAEFRAVEEE 755

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW-------------------------- 715
              A   +         +   +  +    +    +                          
Sbjct: 756  ENARLFYVALTRAEERVLVTASTDITKASPPGPYAHLDMLRTKFPDCVVEWFDGESDDAL 815

Query: 716  ---LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--- 769
               L  + V       +         +D    ++       +++       E    +   
Sbjct: 816  EPPLPEIGVFPQELRPEGADAVKAAMVDLPELIEDGELFERWEQEVTALIEEHHQLSTPV 875

Query: 770  --------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                     + S+I  L  DP   +ARR  +               RGT FH  +     
Sbjct: 876  VPVELGLELTASDIVNLSQDP-QAFARRRRRPVPFKPNSY----AKRGTAFHQWLENRFG 930

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                 +  E+       ID   +                  +   FL+ E   +      
Sbjct: 931  ATALLDADELPG-----IDDALDG------------TELETLKARFLDSEWADR---TPE 970

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
            +V  P +++I      + G  D +     G   + D+KTG  P +   ++ +  QL++  
Sbjct: 971  YVEHPFEVSI--GEHIVRGRMDAVFRDADGRWIVVDWKTGQPPTEAAERRSVSLQLAVYR 1028

Query: 942  AALKAGSFSQIDCRKVANLF-YIR 964
             A        +D  +V  LF Y+ 
Sbjct: 1029 LAWAR--LQGVDPSEVQALFHYVG 1050


>gi|302330242|gb|ADL20436.1| Putative helicase [Corynebacterium pseudotuberculosis 1002]
          Length = 1074

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 116/1044 (11%), Positives = 265/1044 (25%), Gaps = 181/1044 (17%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTI--LPIIKSLGDVVE------------EKFTA 91
             +     T++A Q+L         + + +  L  I   G++              + +  
Sbjct: 63   RILGLTFTRKAAQQLSQRIRGRLEQLAGMDALRDIDPSGELSYKLEAIAPTVSTYDSYAG 122

Query: 92   DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
             L+  Y L  PV    RL+    L  I  + + +    L  ++               + 
Sbjct: 123  SLIREYGLLLPVEPTSRLITETELFQIAYDIVINYSGSLDTQTQPVNA---------TEK 173

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYG--------------------MWWLLAADFLKIA 191
            L  ++  I+      +D+    +                            +    +   
Sbjct: 174  LLSLVSEIDNHIVSPQDIVEETDAFLSVLDDVEAASKRGLNQILIGWKQRQIIRKQMLPM 233

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLM 246
                 + L   N  +         R   E        +     +++     +  A   L+
Sbjct: 234  VAMLKQHLAYNNLMTFGEQMSLAARLAEENPQVGASQRDRYSVVLLDEYQDTGHAQRVLL 293

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
             ++ +   GA V    D       W   T  +      +                 L  +
Sbjct: 294  RSLFS---GAAVTAVGDPMQSIYGWRGATSANLERFREDFA---------------LGEE 335

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                + L            + ++       +       ++           +V L    +
Sbjct: 336  PAQKRELTVSFRNPPEVLQLANEVSREVLGAPDNPRRTVQPLSSREGAPHGEVTLGFFPS 395

Query: 367  EREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
              +E   +A  L  +     +   +A++   +  +  + LEL   G+ ++I     L   
Sbjct: 396  AEKEREFVADQLAEAYKNRGESFTAAVLVRKKRHSAPIALELQSRGVPVEIVGLSGLIDI 455

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
               + L ++   + +  D  +   ++  P    G  +      + A      +  +    
Sbjct: 456  PEVADLIAIAAMLIRPQDTKSALRILAGPHVGLGAADILALADRAANLAGRGKAEREEKK 515

Query: 485  IMDLKSLVLDRIATQKNNTH-----VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
               L+ L      T                      ++  A    D  L+ +  L +   
Sbjct: 516  TDPLERLEQIIAETLPKAPESVVGLAEAVADLDVPREEGAATRYSDEGLRRLQLLASELR 575

Query: 540  NKNSTCGNLSISDW---TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
               +     S+ D     +        V   E                + + S      +
Sbjct: 576  YLRTHSLGHSLPDLFADIERVFGIRTEVLQREDPHSDGAPGTVHLDRFAEVVSDFARVPN 635

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
               +  ++++++     DG        +S  + IL   +++ L +  + +   +   +  
Sbjct: 636  ATLSQFLDYLELSRSQGDGLEPGEVQVRSDRVQILTVHKAKGLEWQIVSVMHADSSTYKT 695

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKY-----------------------------------I 681
             T+        + S L     E                                      
Sbjct: 696  TTSTWLSNESAVPSALRGDAREDDSLVGAPVWYIDSAESPADLKKQGEAHIAEFRAVEEE 755

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW-------------------------- 715
              A   +         +   +  +    +    +                          
Sbjct: 756  ENARLFYVALTRAEERVLVTASTDITKASPPGPYAHLDMLRTKFPDCVVEWFDGESDDAL 815

Query: 716  ---LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--- 769
               L  + V       +         +D    ++       +++       E    +   
Sbjct: 816  EPPLPEIGVFPQELRPEGADAVKAAMVDLPELIEDGELFERWEQEVTALIEEHHQLSTPV 875

Query: 770  --------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                     + S+I  L  DP   +ARR  +               RGT FH  +     
Sbjct: 876  VPVELGLELTASDIVNLSQDP-QAFARRRRRPVPFKPNSY----AKRGTAFHQWLENRFG 930

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                 +  E+       ID   +                  +   FL+ E   +      
Sbjct: 931  ATALLDADELPG-----IDDALDG------------TELETLKARFLDSEWADR---TPE 970

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
            +V  P +++I      + G  D +     G   + D+KTG  P +   ++ +  QL++  
Sbjct: 971  YVEHPFEVSI--GEHIVRGRMDAVFRDADGRWIVVDWKTGQPPTEAAERRSVSLQLAVYR 1028

Query: 942  AALKAGSFSQIDCRKVANLF-YIR 964
             A        +D  +V  LF Y+ 
Sbjct: 1029 LAWAR--LQGVDPSEVQALFHYVG 1050


>gi|21323542|dbj|BAB98169.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum ATCC
            13032]
          Length = 1073

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 125/1051 (11%), Positives = 274/1051 (26%), Gaps = 170/1051 (16%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPI---IKSLGDVV------------EEKFT 90
             V     T++A Q+L     +     + + P    I   G +              + + 
Sbjct: 68   QVLGLTFTRKAAQQLSQRIRKRLETLAGV-PRLKDIDPTGQLEKNLQAITPTVSTYDSYA 126

Query: 91   ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
              L+  Y L  PV    RL+    L  I RN + +   +L      +             
Sbjct: 127  GTLIREYGLLLPVEPSARLITQTELYHIARNVVNNYDGELTATQTPATVTEY-------- 178

Query: 151  NLADIIDIIETEEKKWEDLHAL----------------KNEKYGMW---W---LLAADFL 188
             L  ++  ++      ED+                   + +        W    +A    
Sbjct: 179  -LLKLVSEMDNHMVTAEDIREESDPFIKLFDELPKGKGQRDNLNAEMTKWRDTQVARLQY 237

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATA 243
                K   E L      +                +  +  +     +++     +  +  
Sbjct: 238  LPLVKALKEELHNQAVVTFGEQMSKAAHLASTHPQVGYSQRRRFRVVMLDEYQDTSHSQR 297

Query: 244  RLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             L+S++    + G  V    D       W   T  +      +              +  
Sbjct: 298  VLLSSLFGGTDPGLTVNAVGDPMQAIYGWRGATAANLENFVDDFPV-----------IHL 346

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                R     L            + +        S    T  ++   P       +V+L 
Sbjct: 347  DGKTRAPKNELTTSWRNPPEVLTLANAVSREVLGSPDAPTRTVQPLQPREGAPTGEVSLG 406

Query: 363  EADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTRFGINIDISAG 418
                  +E   +A  +    +  ++     +A++   +  +  +  ELT+ GI ++I   
Sbjct: 407  WFGTAAQEREFVADEMVKHWNAREEKGTFTAAVLVRKKRHSAPMAEELTKRGIPVEIVGL 466

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
              L      + L SL   + + +D  A   ++  P    G  +    + +       +  
Sbjct: 467  SGLLDIPEIADLISLATMLVRPHDNRAALRILAGPHVGLGVADLQRLQGRARNIAGRVSR 526

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
             +   +   L  L                  +  +  D        +  L  +  L T  
Sbjct: 527  ERREKNPDPLAELDAIIEEATAIEPEAVVGLA-DAVADLGEGDRFSEEGLSRLKRLATQL 585

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                      S++D      T          R+ P+         L     ++   G   
Sbjct: 586  RYLRKYSLGRSVADIFADIETVFNIRTEVLSRQDPHADGAAGTVHLDKFAEEVASHGGIG 645

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                +++ ++     +G        +S  + IL   +++ L +D + +   +   +    
Sbjct: 646  LPELLDYFELAKDQEEGLEPGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADASTYDAKA 705

Query: 659  AKN----PFLSRVMQSDLNLKTAEK--------------------------YIGQAAHDF 688
            +        +   ++ D      E                               +   +
Sbjct: 706  STWLKNVTMIPSSLRGDAGTGAPEMDTSEADDRKALEDSGKEYTSEVREGLREENSRLFY 765

Query: 689  EMANGTRHLIYTRSLRENNIPT---IASRWLQRL----------LVLGGTDFFDNLKKRG 735
                 +  ++       +   T   +    L+ L             G     +  K   
Sbjct: 766  VGITRSERVLLVTGSALDESGTKAKVPYGHLEILRDKAPECVVSWWEGEEGDVEKQKPAE 825

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKP--------------------------FPPLEAQPRT 769
              +                 R +P                                 PR 
Sbjct: 826  GVFPQLLAADSSGADLVRGPRAEPNNEGGLESLWEKEVSALIDEHRRLSNPIVEVETPRE 885

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             + +++  + N+P    ARR+ +               RGTLFH  + +        +  
Sbjct: 886  LTATDLVSMKNNPEQF-ARRMRRPVPFKPNTY----AKRGTLFHQWLEDRFGSTALLDET 940

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
            E+  + +   D  F +                 +  +FL    + +      FV  P ++
Sbjct: 941  ELPGIDEDYSDDAFIE-----------------LRDAFLGSTWENR---TPEFVEHPFEV 980

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
             I      + G  D +     G   + D+KTG  P        I  QL++   A      
Sbjct: 981  TI--GEHVIRGRMDAVFHT-DGTWMVVDWKTGRTPTGPEMDAAII-QLAVYRLAWAR--L 1034

Query: 950  SQIDCRKVANLF-YIRLKQKFKIDCITNDKK 979
              ++  +V   F Y+     F+ + +   ++
Sbjct: 1035 KGLEPEEVRAAFHYVAHDHTFEPNDLPTQEE 1065


>gi|325109168|ref|YP_004270236.1| hypothetical protein Plabr_2614 [Planctomyces brasiliensis DSM 5305]
 gi|324969436|gb|ADY60214.1| hypothetical protein Plabr_2614 [Planctomyces brasiliensis DSM 5305]
          Length = 1129

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 145/1104 (13%), Positives = 316/1104 (28%), Gaps = 165/1104 (14%)

Query: 44   LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            +  V    PT R+ Q +    ++         P + +     E         +  LNP  
Sbjct: 34   IGEVLWLTPTHRSAQAVLKRLLD-DDLACCWAPGVMTFEQFAERVLRGAGQPASLLNPA- 91

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               +R + +   I   R            +  L      A        L   I  ++ EE
Sbjct: 92   ---ERRMLVKSTISDVRR-----------DGELQYFNRVAETRGFGNQLGRFIAELKREE 137

Query: 164  KKWE-DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA--E 220
               +  L+ L +             L +    + +R++  +   P G      R      
Sbjct: 138  AWPDLWLNQLTDRPDSP----KDRELGLLYDRYQQRMLAWDKYDPEGRFWLARRELTNGR 193

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                     +++ G +        ++  +A                   +   +  ++ +
Sbjct: 194  WDAFPELQLVVVDGFSDFTTTQQEMLLLLA--------------DHAREVLLALPGETGS 239

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                  + S     +L        I+                +      +  P     + 
Sbjct: 240  DRPELFSRSGGTAAALRATAKRRQIETAVW---------NGQKQEQTVLASRPIGLQTLA 290

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNL 398
                   +     +    V  + A   + E   +A A++  L +    ++ ++       
Sbjct: 291  RNLFKNVRRIIPAEVAEGVHCVAALGHQAETREVARAVKQLLLDGVPAEEISVTCRQPEE 350

Query: 399  ARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH-PLAK 456
               +     +  G+   I   +P+S+   +   +++L  I +   +  +  L++H PL+ 
Sbjct: 351  YAALVDSVFSDAGLPYQIDRTLPVSSLPLARAFSAILGTIQEDWSYATLKKLLRHTPLSW 410

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
              +           +  V    N     +  L++L       +       +         
Sbjct: 411  ADWDNAAQR--CRNVLHVLRLLNLQGGRLEILRTLQSLASRAEVERDAEENETFNDRSAL 468

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
               A   +  + + + PL    +        L+I           +    +         
Sbjct: 469  YREAHETLAKLDEQLRPLAKSGSYSEQVGRLLAIGRELFTDNQSKEKTEQETPTSASGRS 528

Query: 577  FEEEGKTLSSLFSKIIE------TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
            +E +   L+ +  +  E           + +  ++ + +      + + P+  ++  + I
Sbjct: 529  WESQWDLLAGMLRESAEFQDRLSKPPGRRVSWADFTEWLEDQFQSQMLPPEKARAGHVLI 588

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH---- 686
            L   ++R L+   L + GL EG +P    + PF S   +   N       +  A +    
Sbjct: 589  LNAEQARHLDVPYLFVMGLQEGSFPSRQGQPPFYSEQERRQWNQTGINLIVEGARYQEEM 648

Query: 687  -DFEMANGT--RHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKR-------- 734
              F        R L  T S       P  AS + Q +  L   +     +          
Sbjct: 649  LLFYRLVTRAQRQLTLTYSRVNSTGGPLYASPFYQAVRELFTAESLGEQQVGSLSPVPEQ 708

Query: 735  --------------------GQCYLDWTRKLDYTTKQPHYKRPKPFP------------- 761
                                    L W       +   H  R                  
Sbjct: 709  NELLTASDCRLRSVVEMGGKDAALLSWWASQPDLSPSFHSLRAAARMNSHRFETPGFTAY 768

Query: 762  --------------PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                                 T+S S ++   + PY  +   IL LD +   +   D   
Sbjct: 769  EGLLEAGDNRRWLQQRFPADYTFSASRLEGYASCPYRFHLDHILGLDPVQSPRLATDHRR 828

Query: 808  RGTLFHNIITELIKKRINKNTPE-INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
            RG + H+++  L     + +T E +    +Q++   FE+      +      +  ++   
Sbjct: 829  RGNVVHDLLAGLYDSADDSSTAEGLADRFQQMVVEAFERTLSRSELRQALDEVEQQLLTE 888

Query: 867  FLEHEEKIQ------------SSIEKIFVNIPAK--------------MAIESIG--IHL 898
            + +  +               S     +  +                 +A       + +
Sbjct: 889  WADLYDAQAESYYDQYAADWVSPPRPQYRELTFGREDATSEQNESFPPVAFGDGEDVVLV 948

Query: 899  TGFADRIDL--LKSGFVD-ITDYKTGDNP--KKETAQKLIDPQLSLEAAALKAGSFSQID 953
             G  DRID+  L  G V  + DYKTG+ P  K E   +    QL+L A A+        D
Sbjct: 949  EGRIDRIDVGELAEGPVFNLIDYKTGEPPRMKAEQLSRGTQLQLALYAVAITRLKLVGED 1008

Query: 954  CRKVANLFYIRLKQKFKIDCITNDKKKYSA--DELSEKSLKNLIEIVTLL----QNGEQP 1007
                  + Y  +++K  +  +T   KK++   +E+  +  + L  ++  +    ++G+ P
Sbjct: 1009 AV-PYLIGYWGIREKGFVPQLTKSGKKWTPLSEEMLREWEQTLDRLLPHMVACLRDGQFP 1067

Query: 1008 FISHLRLSEKSNIQSEYDHLARVA 1031
                    E       Y  + R+ 
Sbjct: 1068 ---VFNEDEHCVSFCPYRMVCRIG 1088


>gi|154685513|ref|YP_001420674.1| hypothetical protein RBAM_010790 [Bacillus amyloliquefaciens FZB42]
 gi|251764577|sp|A7Z367|ADDB_BACA2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|154351364|gb|ABS73443.1| AddB [Bacillus amyloliquefaciens FZB42]
          Length = 1166

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 114/1041 (10%), Positives = 262/1041 (25%), Gaps = 151/1041 (14%)

Query: 58   QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
              L   E  +       I   + S   +          ++    P V+     + L +LI
Sbjct: 44   TFLMEYELAKTPDIGGMIRAQVFSFSRLAWRVLQHTGGMNR---PFVTTTGVQMLLRKLI 100

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
               +++               +    ++     + +  ++   +    + ED+  +    
Sbjct: 101  EEHKHE-------------FKVYQKASDKTGFTEQVERMLTEFKRYCIEPEDVRRMAESG 147

Query: 177  YGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
                +            L I  +     L            + L+  +           +
Sbjct: 148  TASEYRGERMLSEKLHDLGILYQQMERSLA--GHYLHSEDYLTLLAQQIPLADVVKGAHV 205

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
             + G     P   R++  +  H          D        + +       ++       
Sbjct: 206  YVDGFYQFTPQELRVLEQLIMHAEHVTFSLTADSPSAEQAPDELDLFRMTGSTY------ 259

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
               Y L +    L+      K L                            +        
Sbjct: 260  ---YKLYQTAKELNADIS-CKELHGTKR------------HQHAPELACIESQYDVRPAA 303

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL 406
                      +++A N R E   IA  ++  + +        + LI    +    +K   
Sbjct: 304  AYTGGQEAFTVMQAQNRRAELEGIAREIQSLVRDGGYRYKDMAILIRQPEDYKDLLKEVF 363

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLS 465
              +G+   I     +        + S L+ +     + A+    K  L      PE+ + 
Sbjct: 364  ADYGLPYFIDGKASMQHHPLIEFIRSSLDVVKGNWRYEAVFRCAKTELLFPLDQPEQKIR 423

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
               + LE   +            +  V  R  +   +      +  +     E    +  
Sbjct: 424  EQVDQLENYCIAYGIKGERWTSGERFVYRRFVSLDEDFAQTDQEIEMEHMLNETKEWMAA 483

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR--KLPNLWFEEEGKT 583
             +++    +   KT ++         + T + +   +     E     +      +    
Sbjct: 484  PLVKLQNRMKKAKTVQSMAEALYLFLEDTDVPLKLDRKRQRAEEAGNMIEAQQHGQAWDA 543

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            +  L  +        + +   +  ++    +             +F+     SR+     
Sbjct: 544  VIQLLEEFAGMMGEDEISLALFQQMLETGTESLHFSLIPPALDQVFVGNMDLSRMYGTSC 603

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR-- 695
              + G N+GV P    +N  LS   +       + L +A +      H    MA  +   
Sbjct: 604  TFVIGANDGVLPARPDENGVLSDDDREWLKAVGVELSSAGRERLLDEHFLIYMALSSPSD 663

Query: 696  HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTD---------------------------- 726
             L  +  + +    T+  S  + RL  L                                
Sbjct: 664  RLYVSYPIADAEGKTLLPSIVVNRLGELFPDHQEKLSAADPEQVSEEEQLQYLVNKQVAQ 723

Query: 727  ---------FFDNLKKRGQCYLDWTRKLDYTT---------------KQPHYKRPKPFPP 762
                     +    +     +  +   +                   +    +RP     
Sbjct: 724  TYTASQLRLWTREYEISDVWWSAYNVLMKEPDHRRAKKLFSSLFFRNEAKRLERP-VSRQ 782

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            L  +    S S ++      ++ +A   L+L     F    D  D G LFH+ +  +  +
Sbjct: 783  LYGEHIKGSVSRMEAFNACQFSHFASHGLQLKERQFF--KLDAPDIGQLFHSSLKLISDR 840

Query: 823  RINKNTPEINH----------LMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSF--LE 869
               +     +              + +    +KE L       + +    KI      + 
Sbjct: 841  LREQKLEWRDLTKDQCRNFSYEAVERLAPKLQKEILLSSNRHFYVKEKLQKIVTRVSGIL 900

Query: 870  HEEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDIT 916
             E    S    + + +       +  +   L         G  DR+D  +S     + I 
Sbjct: 901  SEHAKASGFVPVGLELGFGGSGPLPPLTFTLKNGCTMELVGRIDRVDKAESSKGLLLRIV 960

Query: 917  DYKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
            DYK+             +  Q+      ++             A + Y  +      D +
Sbjct: 961  DYKSSDRGLDLAEVYYGLALQMLTYLDLSITHSEDWLGMKATPAGVLYFHI-----HDPM 1015

Query: 975  TNDKKKYSADELSEKSLKNLI 995
                     DE+ ++  K   
Sbjct: 1016 IQASLPMGLDEIEQEIFKKFK 1036


>gi|15604268|ref|NP_220784.1| hypothetical protein RP403 [Rickettsia prowazekii str. Madrid E]
 gi|81554846|sp|Q9ZDC8|Y403_RICPR RecName: Full=Uncharacterized protein RP403
 gi|3860960|emb|CAA14860.1| unknown [Rickettsia prowazekii]
 gi|292572014|gb|ADE29929.1| RecB family exonuclease [Rickettsia prowazekii Rp22]
          Length = 870

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 138/727 (18%), Positives = 250/727 (34%), Gaps = 113/727 (15%)

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
            P+     ++++  E +N  +EA  IA           K  A++T D  L +     L + 
Sbjct: 204  PSYNHMSNNISYSEPNNIYQEAKQIAYI---CELNKDKHIAIVTNDNKLKKVYCNFLDQK 260

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
              ++    G  L  T   ++L +++  I    D   +  L+K+PL            A  
Sbjct: 261  YSDLL---GNDLRLTNIGALLNAIIKIICNDFDLKLLFLLLKNPLINCH--------AVQ 309

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
             LEL+    N+       L  L                      EE +E  V L+D +  
Sbjct: 310  KLELMLSNKNRFISSPKYLLQL------------------QFDDEEIREYCVNLIDILF- 350

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                          T    +I+D   LT    + +        PN+W +E G  L    +
Sbjct: 351  --------------TNNPHNITDILILTQQIAEKLL-------PNIWEQEGGTVLIEFLT 389

Query: 590  KIIETGSCIKANAI-EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
             +I     I      ++  I + L+       K   SS + I    +  L  FD +IL  
Sbjct: 390  NLISYSKHINLTNKKDFPKIFSFLLSNIK-HYKNIDSSRIIIGQPEDLALCRFDLIILPH 448

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK-YIGQAAHDFEMANGTRHLIYTRSLRENN 707
             N   W  N   +P LS+     LN+   +       +  F +    + ++   + + N 
Sbjct: 449  FNNEHWSSNAKPHPLLSKKALQILNIDYDDAITTTLYSDYFNLLLQNKQIVILNAKKYNG 508

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
              + A     RL +      F+   K+           ++T  Q  +K           P
Sbjct: 509  KLSAACNLFLRLQLKYVIPCFECDIKKKLFTPAINSLDEHTKPQDDHK---LTTISNTFP 565

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK- 826
               S ++I+ LI +PY  YA++IL L    +  ++P  +D G   H ++ +  K    + 
Sbjct: 566  SVLSVTDIETLIRNPYGFYAKKILGLHKKDNIWEEPKISDFGNFIHKVLEKYSKNYDKQY 625

Query: 827  ---NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
               N  +    +  I ++      LP +    W+      S +F+  + + + + +KI+ 
Sbjct: 626  VYLNLHDKQAALINIGNNILYSTILPAYTKKTWQIKLTAFSKTFILFDIERRKNCKKIYF 685

Query: 884  NIPAKMA--IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
             I  ++   I    I + G ADRI++ KS ++ I DYKTG  P K+  +  + PQL +E 
Sbjct: 686  EIKGELRLNIAGQDIKIIGIADRIEVSKSNYITILDYKTGTIPTKKEIEFGLSPQLIIEG 745

Query: 942  AALKAGSF--SQIDCRKVANL-------------------------------------FY 962
              L    F     +  + +                                        Y
Sbjct: 746  LMLIENGFNIESFNNLETSQFSNIHFCKGNFICSTEQMVNPSYLNHYKSSYINTKLTIAY 805

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022
            +++      +      +     E   K    LI ++       + F          +  +
Sbjct: 806  VKITS---TEPYIQTIEIDLNIETLHKHKVGLIRLLEYYVT-NKSFS----YDFNLSNYN 857

Query: 1023 EYDHLAR 1029
            +Y HL R
Sbjct: 858  DYWHLTR 864



 Score = 62.2 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 71/219 (32%), Gaps = 44/219 (20%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F +     +++                   V I +P      +L+    +    K   LP
Sbjct: 7   FLQNFAEYIIDQLKKGI------------EVQIILPNNFLCLKLKKILTDKYKIK---LP 51

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
           II     +  +K  +D          +S I+ L  L+ +I  ++                
Sbjct: 52  IIIPFNFIFSKKNESDY---------ISKIEELFILSSIITEYKA--------------- 87

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
            LP +   ++  A+ L  + + +         +  ++      +W     FL+     W 
Sbjct: 88  -LPFNLEESLKAAEILRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCFLTWK 143

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
           + +      +   ++  L++ E   + K  +  II+AG 
Sbjct: 144 KTIALTQKYTKTIHKFNLLQEEIIKIKK-RENRIILAGI 181


>gi|311743791|ref|ZP_07717597.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272]
 gi|311312921|gb|EFQ82832.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272]
          Length = 1050

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 110/1032 (10%), Positives = 272/1032 (26%), Gaps = 116/1032 (11%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +     ++  + +    +  + D         V +   +++A +E+R+      G  +
Sbjct: 48   PGTGKTTTLVELVADRIGHDEVQPD--------QVLMLTFSRKAAEEMRARVAARLGGTA 99

Query: 73   TILPIIKSLGDVVEEKFT--ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
              +    +            AD          ++  ++   LA L+              
Sbjct: 100  APV-RAMTFHAWCYALVRQFADPEEFAAPPTLMTAAEQDAVLAELLAGH----------- 147

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             P +  +           A  +   +  + +  +  +DL  L  +     W   AD L+ 
Sbjct: 148  DPSTWPAGLRPALRTRGFATEVGGFLSSLASGGRTTDDLRRLAADLDRPAWARVADALEE 207

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                   + +   A   V     L   EA   ++     +++     +      ++  + 
Sbjct: 208  YGAVTDAQNLTDYAELVVRASALLDDPEASAAVRHDLRLVVVDEYQDTDTLQVEVLRKLV 267

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                   ++   D       +      +    + +   +          +  L   R   
Sbjct: 268  GPAQ--QLVAVGDHDQSVYGFRGADVANMARFTDHFEGAE---------VRALRTTRRFG 316

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
             R+         R+   +                    +  +     +V ++       E
Sbjct: 317  PRI---------RAAATAVLPPGQPGGLPVEVVRQHRDLACVAASEGEVEILTFATPAAE 367

Query: 371  AISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLH 426
               IA  LR    E  +     A++        R+   L    +  +++    PL     
Sbjct: 368  VEHIAQLLRREHLEGGRPWSDLAVLVRTSAQLDRLHRALVAADVPCEVAGDEIPLVAEPA 427

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              +L   L A  +L     +   + H L             +        R  +++    
Sbjct: 428  VRVLLGALGAADRLARGEELEPELAHTLLTGPLAGMDAPDLR-----SFARRLRDTDRET 482

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
              + L+   ++      H     +R   E    A  LV             +  +     
Sbjct: 483  PSRVLLARAVSGLHAGDHELDPAARRLAELLARAADLVQR----------REPPEQVLWE 532

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                +DW +      ++   D      +L    +        +   E     +       
Sbjct: 533  LWDGTDWPRRLDLAWESGGADRAAADRDL----DAVVALFHHAARSEERHTRRTVQAFLA 588

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            D+ ++ +  + +     + + + ++    ++ L +  +++ G+ E +WP  TA+   L  
Sbjct: 589  DLRSQQLPADRLADSTARPAAVRLMTAHRAKGLEWPVVVVAGVQEDIWPNLTARPSLLRP 648

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLG-- 723
             +     +   ++   +    +         +   ++   +      SR++  L   G  
Sbjct: 649  DLLDGSPVTARDRLHEERRVLYVALTRAGERLVVTAVDPGSAEAEGPSRFVAELAAAGSD 708

Query: 724  ---GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK------------------------- 755
               G +       R          L      P  +                         
Sbjct: 709  HGFGVESRLGRPSRPMSLRSVITALRRCAADPDPEVRASAAGLLARIAGHGSPNARVAHP 768

Query: 756  ----------RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                      R +       Q    S S I  +       +             +     
Sbjct: 769  DTWWGLVDPTRSEAPLRDPEQSLGLSGSSITSITGCSLKWFLS-----SEANGSRGSSTA 823

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
               G + H +  +++++ + + T          +      E          R   H+   
Sbjct: 824  QGFGLVVHAVAADVVRRGLERPTAAELQAHLDAVWHRLGHETAWIGER--ERAEAHQALA 881

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NP 924
             F         +         A++ ++   + L G  DR++L   G V I D+K     P
Sbjct: 882  RFATWHAANARTPLAAEHEFRAELVVDGETVVLRGSMDRVELDAEGRVHIVDFKNSKHAP 941

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
                  +   PQL +   A+             + L  +R+            + + +  
Sbjct: 942  AAAEVLQH--PQLGVYQLAIATEGIEGHHEVGGSELVQLRIPAGSATPDAPKVQVQPAPA 999

Query: 985  ELSEKSLKNLIE 996
            + +   + +L+ 
Sbjct: 1000 DPTASFVHDLVR 1011


>gi|108798374|ref|YP_638571.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119867471|ref|YP_937423.1| UvrD/REP helicase [Mycobacterium sp. KMS]
 gi|108768793|gb|ABG07515.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119693560|gb|ABL90633.1| UvrD/REP helicase [Mycobacterium sp. KMS]
          Length = 1051

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 111/1018 (10%), Positives = 269/1018 (26%), Gaps = 127/1018 (12%)

Query: 60   LRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-VSNIQRLLELARLILI 118
            +    ++   ++    P+++++              + +  P  +++ ++   +  L+  
Sbjct: 76   VTRRLLDGGARQVVRAPLVRTVHSYAFAVLRLAAQRNGDAPPRLITSAEQDGIIRELLAG 135

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
                      D    +  +           A  L D++            L  L      
Sbjct: 136  DLED-----GDRSAVAWPAALRPALTTAGFATELRDLMARCTERGVDPVALQRLGRLSRR 190

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238
              W  A  F +   +              +    + +   A        G   + G+   
Sbjct: 191  PEWAAAGRFAQAYEQ--------------IMLLRSAVGMAAPQATTPALGAAELVGAALE 236

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
              A    +     +  G +++       P A        +    +          +    
Sbjct: 237  AFAMDADLLAAERNRIGLLLVDDAQHLDPQAARLVRVLAAGADLTVFAGDPDQSVFGYR- 295

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ-KCFS 357
                       ++     +  +                   R        + N   +   
Sbjct: 296  -----GADPALLRTEEGSAIVLTRSHRCAPAVARAMSGIARRLPGPRPEFVGNEDGRGDG 350

Query: 358  DVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINI 413
             VA+  A     E+  IA ALR +   +     + + ++ +       +   LT  G+ +
Sbjct: 351  SVAVRVAATAHAESALIADALRRAHLVDGVPWSEMAVIVRSLPRAGAPLARALTAAGVPV 410

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            D+ A  PL     +  L ++L A            L+  P+ +         R       
Sbjct: 411  DLPAAAPLVEEPAARALLTVLEATADGLTGAQAEALLSGPVGRVDPVTMRQVRRALRRAD 470

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
             +    + +  ++D               T      S +S E +     +   +      
Sbjct: 471  GSQPPREFTDLLVD-------------ALTGPLPAASDVSAELQRPLRRVRSVLAAARRS 517

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            +      +++       S   +  +   +       +   +L        ++  +     
Sbjct: 518  VDDGLDPRHTLWQAWHRSGLQRRWLAASERGGAAGAQADRDLDAVTALFDVADQYVTRTA 577

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
              S         +D +  L      + +      + +L    +    +D +++ GL EG+
Sbjct: 578  GASV-----RGLLDHVAALGLPPGRRGERRDPEAVAVLSAHAALAGEWDLVVVAGLQEGL 632

Query: 654  WPKNTAKNPFLSRVMQ-----------SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
            WP    +   L                SD     A     +           R  +   +
Sbjct: 633  WPNTIPRGGVLGTQRLVDVLDGVTDSASDAVSTRAPLLAEERRLLIAALGRARRRVLVTA 692

Query: 703  LRENNI--PTIASRWLQRLLVLG-GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR--- 756
            +  ++     + S + Q L  L            R    L  +  +              
Sbjct: 693  VDSDSGAEAMLPSPFCQELTALATDPGDGPPAPVRAPRVLAPSALVGRLRAVVCAPDGAV 752

Query: 757  ------------------------------------PKPFPPLEAQPRTYSFSEIKQLIN 780
                                                 +P    E Q  T S S ++ L +
Sbjct: 753  DDAARECAAAQLARLAAAGVPGADPGQWHAMTALSTDEPLWNDEQQVVTLSPSTLQALTD 812

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             P      R    D           +  G+L H +++E       +   ++ + ++++  
Sbjct: 813  CPLRWLLERHGGRDGRDVR------SAVGSLLHALVSE-----PGRTESQLLNDLERVWA 861

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG----- 895
                +                 +  +F +   + +  + ++   I     +         
Sbjct: 862  DLPYEAQWHAD---NELTRHQAMLSAFEQWRAQTRRELTEVGTEIDVDGVVCDADDGRPA 918

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            + + G  DR++   +G + + D KTG +P  +        QL++   A+ AG  ++ D  
Sbjct: 919  VRVRGRLDRLERDSAGRLVVVDIKTGKSPVTKD-DAQRHAQLAMYQLAVAAGLLAEGDVP 977

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
                L Y+    K      T  ++     E   +  +++ E     Q     F++ + 
Sbjct: 978  GGGKLVYL---GKSGAAGPTEREQDALTPETVAQWRQDVGEAAAATQGP--GFVARVN 1030


>gi|302205690|gb|ADL10032.1| Putative UvrD-helicase [Corynebacterium pseudotuberculosis C231]
 gi|308275925|gb|ADO25824.1| Putative helicase [Corynebacterium pseudotuberculosis I19]
          Length = 1074

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 115/1044 (11%), Positives = 265/1044 (25%), Gaps = 181/1044 (17%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTI--LPIIKSLGDVVE------------EKFTA 91
             +     T++A Q+L         + + +  L  I   G++              + +  
Sbjct: 63   RILGLTFTRKAAQQLSQRIRGRLEQLAGMDALRDIDPSGELSYKLEAIAPTVSTYDSYAG 122

Query: 92   DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
             L+  Y L  PV    RL+    L  I  + + +    L  ++               + 
Sbjct: 123  SLIREYGLLLPVEPTSRLITETELFQIAYDIVINYSGSLDTQTQPVNA---------TEK 173

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYG--------------------MWWLLAADFLKIA 191
            L  ++  I+      +D+    +                            +    +   
Sbjct: 174  LLSLVSEIDNHIVSPQDIVEETDAFLSVLDDVEAASKRGLNQILIGWKQRQIIRKQMLPM 233

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLM 246
                 + L   N  +         R   E        +     +++     +  A   L+
Sbjct: 234  VAMLKQHLAYNNLMTFGEQMSLAARLAEENPQVGASQRDRYSVVLLDEYQDTGHAQRVLL 293

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
             ++ +   GA V    D       W   T  +      +                 L  +
Sbjct: 294  RSLFS---GAAVTAVGDPMQSIYGWRGATSANLERFREDFA---------------LGEE 335

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                + L            + ++       +       ++           +V L    +
Sbjct: 336  PAQKRELTVSFRNPPEVLQLANEVSREVLGAPDNPRRTVQPLSSREGAPHGEVTLGFFPS 395

Query: 367  EREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
              +E   +A  L  +     +   +A++   +  +  + LEL   G+ ++I     L   
Sbjct: 396  AEKEREFVADQLAEAYKNRGESFTAAVLVRKKRHSAPIALELQSRGVPVEIVGLSGLIDI 455

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
               + L ++   + +  D  +   ++  P    G  +      + A      +  +    
Sbjct: 456  PEVADLIAIAAMLIRPQDTKSALRILAGPHVGLGAADILALADRAANLAGRGKAEREEKK 515

Query: 485  IMDLKSLVLDRIATQKNNTH-----VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
               L+ L      T                      ++  A    D  L+ +  L +   
Sbjct: 516  TDPLERLEQIIAETLPKAPESVVGLAEAVADLDVPREEGAATRYSDEGLRRLQLLASELR 575

Query: 540  NKNSTCGNLSISDW---TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
               +     S+ D     +        V   E                + + S      +
Sbjct: 576  YLRTHSLGHSLPDLFADIERVFGIRTEVLQREDPHSDGAPGTVHLDRFAEVVSDFARVPN 635

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
               +  ++++++     DG        +S  + IL   +++ L +  + +   +   +  
Sbjct: 636  ATLSQFLDYLELSRSQGDGLEPGEVQVRSDRVQILTVHKAKGLEWQIVSVMHADSSTYKT 695

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKY-----------------------------------I 681
             T+        + S L     E                                      
Sbjct: 696  TTSTWLSNESAVPSALRGDAREDDSLVGAPVWYIDSAESPADLKKQGEAHIAEFRAVEEE 755

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW-------------------------- 715
              A   +         +   +  +    +    +                          
Sbjct: 756  ENARLFYVALTRAEERVLVTASTDITKASPPGPYAHLDMLRTKFPDCVVEWFDGESDDAL 815

Query: 716  ---LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--- 769
               L  + V       +         +D    ++       +++       E    +   
Sbjct: 816  EPPLPEIGVFPQELRPEGADAVKAAMVDLPELIEDGELFERWEQEVTALIEEHHQLSTPV 875

Query: 770  --------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                     + S+I  L  DP   +ARR  +               RGT FH  +     
Sbjct: 876  VPVELGLELTASDIVNLSQDP-QAFARRRRRPVPFKPNSY----AKRGTAFHQWLENRFG 930

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                 +  E+       ID   +                  +   FL+ E   +      
Sbjct: 931  ATALLDADELPG-----IDDALDG------------TELETLKARFLDSEWADR---TPE 970

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
            +V  P +++I      + G  D +     G   + D+KTG  P +   ++ +  QL++  
Sbjct: 971  YVEHPFEVSI--GEHIVRGRMDAVFRDADGRWIVVDWKTGQPPTEAAERRSVSLQLAVYR 1028

Query: 942  AALKAGSFSQIDCRKVANLF-YIR 964
             A        ++  +V  LF Y+ 
Sbjct: 1029 LAWAR--LQGVEPSEVQALFHYVG 1050


>gi|83589345|ref|YP_429354.1| ATP-dependent deoxyribonuclease subunit B [Moorella thermoacetica
            ATCC 39073]
 gi|123525009|sp|Q2RL78|ADDB_MOOTA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|83572259|gb|ABC18811.1| ATP-dependent deoxyribonuclease subunit B [Moorella thermoacetica
            ATCC 39073]
          Length = 1151

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 112/944 (11%), Positives = 227/944 (24%), Gaps = 122/944 (12%)

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-----KYGMWWLLAA 185
                 L L    A +    + LA  I  ++       DL  +        +         
Sbjct: 102  AHRDDLGLFAPLAGSPGFIEQLAHTIAELKLYRVTPADLDRILERYRETGREQTILARKL 161

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
              L +  +     L            + L+              + + G  G  P    +
Sbjct: 162  RDLALVYRELETYLA--GRYLDPDDYLTLLAGRLPEAAFIRGARVWVDGFNGFTPQEEAV 219

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            +  +        V   LD  +                +          + L +L     +
Sbjct: 220  LQALMAVAEQVTVTLCLDPTLRHRRLGETELFHPTGETY---------HRLRQLALAAGV 270

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
            + ED   L                 F                 +   +   + + L+ A 
Sbjct: 271  RVEDDVCLAGTPPR-----------FREAPALAHLEAHFGRWPLRPFRGDAAGIRLVAAA 319

Query: 366  NEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            N R E  + A  +     E     ++ + L+         +      F I + I    P+
Sbjct: 320  NRRVEVEAAAREILRLAREENLSWRQMAVLVRDLEPYHDLIVNTFRDFNIPLFIDRRRPV 379

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                   ++ + L A+ +   +  +   +K  L      E  L       E   L     
Sbjct: 380  GHHPLVELVRAALEAVLEDWAYDPVFRYLKSDLVPVPREEIDLL------ENYVLAHGIR 433

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                 D +          +  +             +E A   +      +          
Sbjct: 434  GRRWRDSRPWQYGNSRDLETPSPPGSAAGETINAIRERASCHLRRFDGALRGRQLTGREI 493

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
             +   +L         +                   E+  + L  L  +++         
Sbjct: 494  TAALFDLLQELGVPERLAAWSRQAAAAGDLDAAQEHEQIWEGLMDLLEELVLALGDTSLE 553

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
              E+  I+   ++   ++        +       SR        + G+ EGV P    ++
Sbjct: 554  LEEYAAILDTGLESLKLRLIPPALDQVVAGTLDRSRQPELQAAFVLGVGEGVLPARLPED 613

Query: 662  PFLSRVMQ---SDLNLKTAEKYIGQAAH-----DFEMANGTRHLIYTRSLRENNIPTI-A 712
               S   +       L+ A     +  H        +    R+L  +  L +     +  
Sbjct: 614  ATFSDREREELRAAGLELAPTGTLRLFHEEFLAYLALTRSRRYLWLSYPLADAEGKALSP 673

Query: 713  SRWLQRLLVL--------------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR-- 756
            S  ++RL  L              GG D    L    Q      R L      P   +  
Sbjct: 674  SPLVRRLRQLLPGLREETAGTELPGGDDDLVYLTTPRQAAGHLARLLGRGRPLPPLWQEV 733

Query: 757  ------------------------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                                          P+    L  +P   S S+++     P+  +
Sbjct: 734  YRWLHQDARGQKMLGLLEGGGYRNQVDPLEPELARGLYPRPLRLSISQLETFAGCPFRYF 793

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------EINHLMK 836
                L L          D    G  +H  +   +++   +              I   + 
Sbjct: 794  LSYGLGLQERR--LYQVDPAGMGQFYHAALKLFVEELGRRGLDWGRLSDNEAAAIISQVV 851

Query: 837  QIIDSHFEKENLPPHIDI-IWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPAKMA--- 890
              +    + E L         R    +     +E  +E   +     + V          
Sbjct: 852  DSLAPALQHEILSSSARYGYLRKKLEQTLQRVMEVLNEHARRGEFRPLAVETSFGCRGKL 911

Query: 891  -------IESIGIHLTGFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDPQLSL 939
                        + L G  DRID+ +      + + DYK+             +  QL L
Sbjct: 912  PPLQLDAGPGRRVFLEGRVDRIDVARRQGRPYLRVIDYKSSPTTLDLTAVYYGLALQLPL 971

Query: 940  EAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYS 982
               A    +   +    + A + Y  ++           K+  +
Sbjct: 972  YLRAALDAAPELLGEAAEPAGMLYFAVRNPLIRQRGPVGKEAAA 1015


>gi|52079564|ref|YP_078355.1| ATP-dependent deoxyribonuclease subunit B [Bacillus licheniformis
            ATCC 14580]
 gi|52784928|ref|YP_090757.1| hypothetical protein BLi01156 [Bacillus licheniformis ATCC 14580]
 gi|319646647|ref|ZP_08000876.1| AddB protein [Bacillus sp. BT1B_CT2]
 gi|81386041|sp|Q65LK0|ADDB_BACLD RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|52002775|gb|AAU22717.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus licheniformis
            ATCC 14580]
 gi|52347430|gb|AAU40064.1| AddB [Bacillus licheniformis ATCC 14580]
 gi|317391235|gb|EFV72033.1| AddB protein [Bacillus sp. BT1B_CT2]
          Length = 1166

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 120/1041 (11%), Positives = 271/1041 (26%), Gaps = 151/1041 (14%)

Query: 58   QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
              L   E  +      TI   + S   +          ++    P ++     + L RLI
Sbjct: 44   TFLMEYELSKTPDLGGTIRAQVYSFSRLAWRVLQHTGGMNR---PFLTGTGIQMLLRRLI 100

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
               +                 +  + ++     + +  ++   +      + +  +    
Sbjct: 101  EEHK-------------GEFKVYQNASDKSGFTEQVERMLTEFKRHCLPPQSIRDMMEGT 147

Query: 177  YGMWWLL------AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
                +            L I      E L            + L+  +  +  +     +
Sbjct: 148  GKSEYEDERILSDKLHDLYILYSKLEENLENQYV--QSEDYLTLLAEQIPYAEEIRNAAV 205

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
             + G     P    ++  +  H          D        N +        +       
Sbjct: 206  YVDGFHQFTPQEMSVLEQLMVHAEEITFSLTADKPFTANSPNDLHLFRMTGKAY------ 259

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
               Y L +    L +   +V+             +  +K                E    
Sbjct: 260  ---YDLYQKAKELGLDPSEVR-------------LEETKRHRHHPELQHLERYFDERPAK 303

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD-RNLARRVKLEL 406
                    + +++A N R E   IA  +   + + +   +  A+I  +  +    +K   
Sbjct: 304  PYPGQTESLRIMQASNRRTEIEGIAREIHSLIRQGRFRLRDIAVIARNVEDYKDTIKEVF 363

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
                +   I     +       ++ S L+ I     + A+   VK  L       K   R
Sbjct: 364  KDCELPFFIDGKESMQNHPLIELIRSTLDIIKGNWRYEAVFRCVKTELLFPEGQPKERLR 423

Query: 467  A-KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH---WQSRLSEEDKELAVL 522
               + LE   +               V  R A+   +            +  E K   V 
Sbjct: 424  EQIDQLENYCIAYGIKGDRWTSKDPFVYRRYASLDEDFAKTDKEIETENMLNELKGWIVP 483

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
             +  + + +    T +    +    L  +D         + +  +  R   +   E+   
Sbjct: 484  PIHRLQKRLKKAETVREMAEAVYLYLEEADVPMKLEQ-ERRLAEEGGRIAESRQHEQVWD 542

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             +  L  + +E     + +   +  +I   ++             +FI     SR+    
Sbjct: 543  AVIQLLDEFVEMMGTERISFALFQQMIETGLESLKFALIPPALDQVFIGNMDLSRMYGTK 602

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQ-------SDLNLKTAEKYIGQAAHDFEMANGTR 695
               L G+N+G+ P   A +  LS   +       + L     E+ + +    +   +   
Sbjct: 603  CTFLIGVNDGILPARPADDGVLSDEDREWLKRNGAQLAATGREQLLDENFLIYMTLSSPS 662

Query: 696  H-LIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQ----------------C 737
              L  +  + ++   T+  S  ++RL  L        L    +                 
Sbjct: 663  EKLYVSYPIADSEGKTLLPSTVVKRLNELFPDSEEKMLIHEPEQLDDEAQLEFLVNKGIA 722

Query: 738  YLDWTRKL---------------------DYTTKQ--------------PHYKRPKPFPP 762
                  +L                     +   +                          
Sbjct: 723  LSHLAGQLGIWTRQYAISDVWWSTYNFLMNEPDRIFSQNILSSLFFRNKVENLNRHVSRD 782

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            L  +    S S ++     P++ +A   LKL     F    +  D G LFH+ +  +  +
Sbjct: 783  LYGEHIQGSVSRMETFKACPFSHFASHGLKLKERQFF--KLEAPDIGQLFHSALKLISDR 840

Query: 823  RINKNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LE 869
                     +             ++++     ++  L  +     +    KI      + 
Sbjct: 841  LHELKLDWRDLTKAQCETLSSDAVERLAPKLQKEILLSSNRHHYVKQKLQKIIARVSGIL 900

Query: 870  HEEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDIT 916
             E    S    + + +    K  +  +   L         G  DR+D  +S     + I 
Sbjct: 901  SEHAKASGFAPVGIELGFGGKGPLPPMRFTLKNGCTMELVGRIDRVDKAESSKGLLLRIV 960

Query: 917  DYKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
            DYK+             +  Q+      ++   +         A + Y  +      D +
Sbjct: 961  DYKSSDKGLDLAEVYYGLALQMLTYLDLSITHSTDWLGMKASPAGVLYFHV-----HDPM 1015

Query: 975  TNDKKKYSADELSEKSLKNLI 995
                     DE+ ++  K   
Sbjct: 1016 IQASVPLGLDEIEKEIFKKFK 1036


>gi|145294939|ref|YP_001137760.1| hypothetical protein cgR_0885 [Corynebacterium glutamicum R]
 gi|140844859|dbj|BAF53858.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1070

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 125/1051 (11%), Positives = 273/1051 (25%), Gaps = 170/1051 (16%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPI---IKSLGDVV------------EEKFT 90
             V     T++A Q+L     +     + + P    I   G +              + + 
Sbjct: 65   QVLGLTFTRKAAQQLSQRIRKRLETLAGV-PRLKDIDPTGQLEKNLQAITPTVSTYDSYA 123

Query: 91   ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
              L+  Y L  PV    RL+    L  I RN + +   +L      +             
Sbjct: 124  GTLIREYGLLLPVEPSARLITQTELYHIARNVVNNYDGELTATQTPATVTEY-------- 175

Query: 151  NLADIIDIIETEEKKWEDLHAL----------------KNEKYGMW---W---LLAADFL 188
             L  ++  ++      ED+                   + +        W    +A    
Sbjct: 176  -LLKLVSEMDNHMVTAEDIREESDPFIKLFDELPKGKGQRDNLNAEMTKWRDTQVARLQY 234

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATA 243
                K   E L      +                +  +  +     +++     +  +  
Sbjct: 235  LPLVKALKEELHNQAVVTFGEQMSKAAHLASTHPQVGYSQRRRFRVVMLDEYQDTSHSQR 294

Query: 244  RLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             L+S++    + G  V    D       W   T  +      +              +  
Sbjct: 295  VLLSSLFGGTDPGLTVNAVGDPMQAIYGWRGATAANLENFVDDFPV-----------IHL 343

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                R     L            + +        S    T  ++   P       +V+L 
Sbjct: 344  DGKTRAPKNELTTSWRNPPEVLTLANAVSREVLGSPDAPTRTVQPLQPREGAPTGEVSLG 403

Query: 363  EADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTRFGINIDISAG 418
                  +E   +A  +    +  ++     +A++   +  +  +  ELT+ GI ++I   
Sbjct: 404  WFGTAAQEREFVADEMVKHWNAREEKGTFTAAVLVRKKRHSAPMAEELTKRGIPVEIVGL 463

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
              L      + L SL   + +  D  A   ++  P    G  +    + +       +  
Sbjct: 464  SGLLDIPEIADLISLATMLVRPQDNRAALRILAGPHVGLGVADLQRLQGRARNIAGRVSR 523

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
             +   +   L  L                  +  +  D        +  L  +  L T  
Sbjct: 524  ERREKNSDPLAELDAIIEEATAVEPEAVVGLA-DAVADLGEGDRFSEEGLSRLKRLATQL 582

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                      S++D      T          R+ P+         L     ++   G   
Sbjct: 583  RYLRKYSLGRSVADIFADIETVFNIRTEVLSRQDPHADGAAGTVHLDKFAEEVASHGGIG 642

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                +++ ++     +G        +S  + IL   +++ L +D + +   +   +    
Sbjct: 643  LPELLDYFELAKDQEEGLEPGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADASTYDAKA 702

Query: 659  AKN----PFLSRVMQSDLNLKTAEK--------------------------YIGQAAHDF 688
            +        +   ++ D      E                               +   +
Sbjct: 703  STWLKNVTMIPSSLRGDAGTGAPEMDTSEADDRKALEDSGKEYTSEVREGLREENSRLFY 762

Query: 689  EMANGTRHLIYTRSLRENNIPT---IASRWLQRL----------LVLGGTDFFDNLKKRG 735
                 +  ++       +   T   +    L+ L             G     +  K   
Sbjct: 763  VGITRSERVLLVTGSALDESGTKAKVPYGHLEILRDKAPECVVSWWEGEEGDVEKQKPAE 822

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKP--------------------------FPPLEAQPRT 769
              +                 R +P                                 PR 
Sbjct: 823  GVFPQLLATDSSGADLVRGPRAEPNNEGGLESLWEKEVSALIDEHRRLSNPIVEVETPRE 882

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             + +++  + N+P    ARR+ +               RGTLFH  + +        +  
Sbjct: 883  LTATDLVSMKNNPEQF-ARRMRRPVPFKPNTY----AKRGTLFHQWLEDRFGSTALLDET 937

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
            E+  + +   D  F +                 +  +FL    + +      FV  P ++
Sbjct: 938  ELPGIDEDYSDDAFIE-----------------LRDAFLGSTWENR---TPEFVEHPFEV 977

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
             I      + G  D +     G   + D+KTG  P        I  QL++   A      
Sbjct: 978  TI--GEHVIRGRMDAVFHT-DGTWMVVDWKTGRTPTGPEMDAAII-QLAVYRLAWAR--L 1031

Query: 950  SQIDCRKVANLF-YIRLKQKFKIDCITNDKK 979
              ++  +V   F Y+     F+ + +   ++
Sbjct: 1032 KGLEPEEVRAAFHYVAHDHTFEPNDLPTQEE 1062


>gi|332704301|ref|ZP_08424389.1| hypothetical protein Desaf_3201 [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554450|gb|EGJ51494.1| hypothetical protein Desaf_3201 [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 973

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 142/1003 (14%), Positives = 278/1003 (27%), Gaps = 144/1003 (14%)

Query: 8   VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67
           V  I     F   +   LL                 L    I  P  R  + L     E 
Sbjct: 4   VVLIPWQEHFIHRLRDYLLETYG-----------QGLRDSVIVFPHARPARYLTLALAEA 52

Query: 68  TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
            G K+ ILP + S  + V +       L          + R+  L  +I           
Sbjct: 53  AGGKAVILPRMLSESEWVHQLHARLHRLPARQP---GQLDRVGLLYEVIEQQHAT----- 104

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
                     +P+           LA++I+      ++ EDL  +  ++   W     + 
Sbjct: 105 ---GQGLLSRMPMDRKALFPWCLRLAELIEEFLRAGRRPEDLPGM-EDEVQPWAAALLER 160

Query: 188 LKIASKYWTERLVELNASSPVGYQIA-LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
           L      +   + E N ++P         RA+    +       ++     ++P     +
Sbjct: 161 LSGIFDTYLRIMEERNLATPGMESWRVAQRADEAASLLAQSRAPVVLAGFYALPGAHERI 220

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
                    A ++                         + +   H     A LL    ++
Sbjct: 221 FRSVWRRGLATLVW------------HTDPALAEGKCGHWSAQAH-----ADLLKRWGVR 263

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            E      +       R                   +  + K                  
Sbjct: 264 AELYPAAADEEQPASIRFHQGFDLHSQLTALRDELQENQDAKETT--------------- 308

Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
                                 +A+I  D  +   V   L     +++++ G PL+ T  
Sbjct: 309 ---------------------DTAVIIPDEGMLVPVLHHLP--DRDVNVTMGYPLTRTSL 345

Query: 427 SSILTSLLNAIF-----KLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNK 480
             +L ++L             +  +  L++HP  K     E+   R         +R  +
Sbjct: 346 YDLLETVLRLQETSEGPGRYYWREVINLLRHPYLKMLRLDEREPLRLAFHAMEEEVRRGE 405

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
              D + L                  + +    E  ++L   ++   L     + T    
Sbjct: 406 KYLDPLAL------------PVPDTAYPEGLEPEAVEDLRQEVLHACLTAFENIETLAG- 452

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                    ++   +  ++ L+    D  R         +      +      T S    
Sbjct: 453 ---------LASALRGLLSILRTYGSDLWRIFLIDAECLDRVLRGVIPELESSTISEQSL 503

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                  ++ R    + V  + +  + L ++G LE+RLLNF  L +    E   P   A 
Sbjct: 504 PRDTIFSLLRRYAREKRVAFEADPITGLQVMGFLETRLLNFRKLYVLDATEEKIPGAPAG 563

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY------TRSLRENNIPTIASR 714
           +P L   ++  L L  + +    +A+ F                  +     +   + SR
Sbjct: 564 DPLLPDPLRHRLGLPNSRERDYVSAYTFYRLVRASKQTLILYQSGVQPGGILDGKALRSR 623

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCY---LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
           ++++LL          +K         L   R L                 L       S
Sbjct: 624 FIEQLLWEEERKSGRIIKPGQPPLSVSLPTVRPLTLHGHGLAKAEALQDRLLGRLQGKVS 683

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            S +   +  P   + + +  L  +    +D D  + G L H ++ E ++    +  P  
Sbjct: 684 SSLLDCYLGCPLRFFYQYLTPLKAVEEVGEDGDPMELGNLVHEVLREFLQPYKGRPLPAG 743

Query: 832 N---HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                 +  +      +      +    R    +     +    +         + +P +
Sbjct: 744 ALDPAALSGLFLERLRQAPFYLQLGQDGRLSLERTGPHRMALFARGTPETLIRELELPVR 803

Query: 889 --MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA--------------QKL 932
              +++     L G  DR+D  + G V I DYKTG  P    A              +  
Sbjct: 804 ASFSLDGREYLLEGRLDRVDEREGGDV-ILDYKTGSPPSPSQALFLDEELWTRMDSWRSG 862

Query: 933 IDPQLSLEAAALKAG--------SFSQIDCRKVANLFYIRLKQ 967
            DPQL  E +A             ++QI  R  +   ++ L+ 
Sbjct: 863 SDPQLLGELSAAVGSLQMPTYLYLYNQISGRTASEAAWVSLRD 905


>gi|19552002|ref|NP_600004.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389665|ref|YP_225067.1| DNA helicase II protein [Corynebacterium glutamicum ATCC 13032]
 gi|41325000|emb|CAF19481.1| PROBABLE DNA HELICASE II PROTEIN [Corynebacterium glutamicum ATCC
            13032]
          Length = 1070

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 125/1051 (11%), Positives = 274/1051 (26%), Gaps = 170/1051 (16%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPI---IKSLGDVV------------EEKFT 90
             V     T++A Q+L     +     + + P    I   G +              + + 
Sbjct: 65   QVLGLTFTRKAAQQLSQRIRKRLETLAGV-PRLKDIDPTGQLEKNLQAITPTVSTYDSYA 123

Query: 91   ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
              L+  Y L  PV    RL+    L  I RN + +   +L      +             
Sbjct: 124  GTLIREYGLLLPVEPSARLITQTELYHIARNVVNNYDGELTATQTPATVTEY-------- 175

Query: 151  NLADIIDIIETEEKKWEDLHALKN--------------------EKYGMWW--LLAADFL 188
             L  ++  ++      ED+    +                     +   W    +A    
Sbjct: 176  -LLKLVSEMDNHMVTAEDIREESDPFIKLFDELPKGKGQRDNLNAEMTKWRDTQVARLQY 234

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATA 243
                K   E L      +                +  +  +     +++     +  +  
Sbjct: 235  LPLVKALKEELHNQAVVTFGEQMSKAAHLASTHPQVGYSQRRRFRVVMLDEYQDTSHSQR 294

Query: 244  RLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             L+S++    + G  V    D       W   T  +      +              +  
Sbjct: 295  VLLSSLFGGTDPGLTVNAVGDPMQAIYGWRGATAANLENFVDDFPV-----------IHL 343

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                R     L            + +        S    T  ++   P       +V+L 
Sbjct: 344  DGKTRAPKNELTTSWRNPPEVLTLANAVSREVLGSPDAPTRTVQPLQPREGAPTGEVSLG 403

Query: 363  EADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTRFGINIDISAG 418
                  +E   +A  +    +  ++     +A++   +  +  +  ELT+ GI ++I   
Sbjct: 404  WFGTAAQEREFVADEMVKHWNAREEKGTFTAAVLVRKKRHSAPMAEELTKRGIPVEIVGL 463

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
              L      + L SL   + + +D  A   ++  P    G  +    + +       +  
Sbjct: 464  SGLLDIPEIADLISLATMLVRPHDNRAALRILAGPHVGLGVADLQRLQGRARNIAGRVSR 523

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
             +   +   L  L                  +  +  D        +  L  +  L T  
Sbjct: 524  ERREKNPDPLAELDAIIEEATAIEPEAVVGLA-DAVADLGEGDRFSEEGLSRLKRLATQL 582

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                      S++D      T          R+ P+         L     ++   G   
Sbjct: 583  RYLRKYSLGRSVADIFADIETVFNIRTEVLSRQDPHADGAAGTVHLDKFAEEVASHGGIG 642

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                +++ ++     +G        +S  + IL   +++ L +D + +   +   +    
Sbjct: 643  LPELLDYFELAKDQEEGLEPGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADASTYDAKA 702

Query: 659  AKN----PFLSRVMQSDLNLKTAEK--------------------------YIGQAAHDF 688
            +        +   ++ D      E                               +   +
Sbjct: 703  STWLKNVTMIPSSLRGDAGTGAPEMDTSEADDRKALEDSGKEYTSEVREGLREENSRLFY 762

Query: 689  EMANGTRHLIYTRSLRENNIPT---IASRWLQRL----------LVLGGTDFFDNLKKRG 735
                 +  ++       +   T   +    L+ L             G     +  K   
Sbjct: 763  VGITRSERVLLVTGSALDESGTKAKVPYGHLEILRDKAPECVVSWWEGEEGDVEKQKPAE 822

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKP--------------------------FPPLEAQPRT 769
              +                 R +P                                 PR 
Sbjct: 823  GVFPQLLAADSSGADLVRGPRAEPNNEGGLESLWEKEVSALIDEHRRLSNPIVEVETPRE 882

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             + +++  + N+P    ARR+ +               RGTLFH  + +        +  
Sbjct: 883  LTATDLVSMKNNPEQF-ARRMRRPVPFKPNTY----AKRGTLFHQWLEDRFGSTALLDET 937

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
            E+  + +   D  F +                 +  +FL    + +      FV  P ++
Sbjct: 938  ELPGIDEDYSDDAFIE-----------------LRDAFLGSTWENR---TPEFVEHPFEV 977

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
             I      + G  D +     G   + D+KTG  P        I  QL++   A      
Sbjct: 978  TI--GEHVIRGRMDAVFHT-DGTWMVVDWKTGRTPTGPEMDAAII-QLAVYRLAWAR--L 1031

Query: 950  SQIDCRKVANLF-YIRLKQKFKIDCITNDKK 979
              ++  +V   F Y+     F+ + +   ++
Sbjct: 1032 KGLEPEEVRAAFHYVAHDHTFEPNDLPTQEE 1062


>gi|311029444|ref|ZP_07707534.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus sp.
            m3-13]
          Length = 1171

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 111/960 (11%), Positives = 251/960 (26%), Gaps = 139/960 (14%)

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHAL-----KNEKYGMWWLLAADFLKIASKYWTE 197
            A      + +  +I   +      E L        ++        + A  L      + +
Sbjct: 114  AEQFGFIEQMESMITEFKRYCVTPELLQDEIVRIGEDASISEHEKMLAKKLTDILVVYRQ 173

Query: 198  RLVE-LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
                           + L+  +  +     K  I I G     P    ++  +  H N  
Sbjct: 174  LEATLEGKYLDGEDYLQLLAEKIPNSSYIQKADIFIDGFHSFTPQELEVLKELMKHANSV 233

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
             V    D          +       T+            L  +      + E+   L + 
Sbjct: 234  TVALTADKPYDEEAPYDLHLFRETGTTY---------QRLKDIALEEGCELEEPVLLKDT 284

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                +  S+                    + +   +    SDV++++A N R E   IA 
Sbjct: 285  PRFQHADSL-------------RHMEQYFDVRPTVVYPEKSDVSILQAVNRRAEMEGIAR 331

Query: 377  AL----RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
             +    R   +  K  + ++    +    V      + I   +     +       +L S
Sbjct: 332  EIVSLVRDKDNRYKDIAVIVRNAESYIDLVNTVFKDYDIPFFVDQKRTMLHHPLVELLRS 391

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPE-KYLSRAKNALELVALRGNKNSYDIMDLKSL 491
             L  I +   + ++   VK         +   +    + LE   L      +     +  
Sbjct: 392  SLEVISRNWRYESVFRCVKTDFFYSLDQDINEMREKTDKLENYCLSYGIQGHRWTATEPW 451

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL-SI 550
               R      +T  P+ Q+      ++    L   I++ +  L        +      ++
Sbjct: 452  KYRRF--FSVDTEGPYVQTDEEVAYEKEINELRTMIVEPLHMLEKRWKKAKTIDAYCKAL 509

Query: 551  SDWTKLT-----VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
             ++ +       +        +E         E+  K +  +  +++E       +   +
Sbjct: 510  YEYMEDLKIPQKLEARMKKAEEEGNLSSAKENEQVWKAIIQMLDQMVELIGEHPISLSMF 569

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            + ++   ++             + +     SRL +     + G+N+GV P       F+S
Sbjct: 570  MKMVESGLESLRFSLVPPAIDQVIVANFDLSRLTDIKHSFVIGVNDGVIPAKIKDEGFIS 629

Query: 666  RVMQSDL-----NLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIPT-IASRWL 716
               +  L      L           H        + + HL  + +L +    T + S ++
Sbjct: 630  EEERELLSNYGMELAPTSLERLLDEHFLVYTSFLSPSHHLYISYALADEEGKTLLPSSYI 689

Query: 717  QRL----------------LVLGGTDFFDNLKKRGQCYLDWTRKL--------------- 745
            +R+                  L   +    +        +   +L               
Sbjct: 690  KRIKEMFPSLEEKLLLNEPAELTSEEQLRYIHTPSTTLSNLAVQLQTWMKKYPVEPIWWD 749

Query: 746  ---------DYTTKQPHYKRPK------------PFPPLEAQPRTYSFSEIKQLINDPYA 784
                     ++  K     R                  L       S S +++     ++
Sbjct: 750  VYNTLLESEEWQDKTEQVLRSLFYKNEAKKLKQKVSRELYGNFMEASVSRMEKFSACAFS 809

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHL 834
             +A   LKL          +  D G LFH  +  +           K    ++   +   
Sbjct: 810  HFASHGLKLKERK--IYRLEAPDIGQLFHAALKHISDKLRQSGNDWKNLTKQDCEVLAKE 867

Query: 835  MKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK--- 888
               I+    + E L         +     I      +  +    S    + + +      
Sbjct: 868  AVHILAPKLQGEILLSSNRFHYIKRKLETIITRASQILSDHSKASKFTPVGLELGFGKQE 927

Query: 889  ------MAIESI-GIHLTGFADRIDLLKSGF----VDITDYKTG-DNPKKETAQKLIDPQ 936
                  + + +   + L G  DR+D    G     + I DYK+             +  Q
Sbjct: 928  ELPPIQINLPNGVTMELVGRIDRVDK-AEGSRGLLLRIIDYKSSNKALDLTEVYYGLALQ 986

Query: 937  LSLEAAAL-KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            +      +              A + Y  +      + +         D + E+  K+  
Sbjct: 987  MLTYLDIVISHSKGWLGSEATPAGVMYFHV-----HNPMIKTNGMKPEDIIEEEIFKSFK 1041


>gi|291302042|ref|YP_003513320.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
 gi|290571262|gb|ADD44227.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
          Length = 1040

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 127/1018 (12%), Positives = 269/1018 (26%), Gaps = 121/1018 (11%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
              LVE+        +  A + +    +R    LR +      +  + +P + S   +   
Sbjct: 54   AVLVESVAARVKEGVDPADMLVLGFGRRGAARLRRDISARLARTGSEVP-VYSFPALAFA 112

Query: 88   KFTADLLLSYNLNP-PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
               A         P  +   ++ + +  L+                              
Sbjct: 113  VLRAAANRHDAPAPQLLKGPEQDVIIRELLA------------HDAVEWPEAVRPALGTR 160

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  L D++            L  L  E     W+ AADF+         R +   A+ 
Sbjct: 161  TFAAQLRDLLLRATERGISAPRLARLGREHDRPEWVAAADFMTRYVDVLALRSLTGGATY 220

Query: 207  PVGY--QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                  + A      +  +        +       PA   L+  VA    GA ++   D 
Sbjct: 221  DSAEIVRAAASELADDPELVPPPKFTFVDEVQDLDPAQLELLRLVAG--QGANLVAFGDA 278

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
               T  +     +           +                          V+     RS
Sbjct: 279  DSATFGFRGADVRLLREFGDRFPTADG-------------------DPAPEVNLATCHRS 319

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
                 +        +R TD    + P  +     V +    +  ++A  IA  LR++   
Sbjct: 320  ASALLNATSLVAKKLRGTDRFRARAPRPEVGAGQVEVAALRSAAQQAAYIARQLRVAHLR 379

Query: 385  NK----KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFK 439
                  + + ++ +       V+  L   G+ ++I+A    LS       L +++     
Sbjct: 380  EGVAWSQMAVIVKSAAEHLPVVERALRHAGVPVEIAAIDQALSARPIVRHLLTIIQCGLN 439

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                     +        G       R +  L  +A   +                +   
Sbjct: 440  PKSLDEDTAVALLHSVYGGADSLSERRLRQELRRLAHAADVFRSPG-------ELLVEAL 492

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
            ++   +         E       L++ +      +              ++ +   L+  
Sbjct: 493  RDPAELTALPEEPWAEPPRRIAGLMECVRSATGSVEDVL---------WAVWERADLSRR 543

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
              +     + R +      +   TL    +   +      A+ +    ++ +++  +T  
Sbjct: 544  LARRAVSRDSRAVAADGDLDAMMTLFDWAADFADRLPGAGAD-VFAAHVLEQVLPADTRA 602

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL----- 674
             +  +  T+ +L    ++ L +D +++ G+ EG WP    +   +      +        
Sbjct: 603  AQARRGETVQLLTAHSAKGLQWDLVVVAGVQEGTWPNLRPRGSIMGSEALVETVTSGTVV 662

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
             T    + +    F +A          +   +      SR+++ L +           +R
Sbjct: 663  DTMTLLLDEERRLFYVAATRARDRLIVTCVADEDENQPSRFIEELGITVERPA---RLER 719

Query: 735  GQCYLDWTRKLDYTTKQPHYKR----------------PKPFPPLEAQPRTY-------- 770
                     +L      P  +R                P   P      R          
Sbjct: 720  PMTLPSLVAELRLAACGPAGRRKDAAIAQLSVLAKQAVPGADPEEWWGLRPISDHAPLIL 779

Query: 771  -------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                   S S ++ +          R    +            + G L H          
Sbjct: 780  PGERVKVSPSTVELVEQCGLRWMLERHGGTEPSG------LPQEIGNLVHA------AAE 827

Query: 824  INKNTPEINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
                T +    M   +  H  K     P            +   F    E     +  + 
Sbjct: 828  AAAVTDDPRQAMADFVAQHLAKLPFEAPWKAKQDSERVRSMVDKFASWLESNNRDL--VA 885

Query: 883  VNIPAKMAIESIG----IHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQL 937
                  + +          L+G  DR++    G + + D KTG  P     A+   +PQL
Sbjct: 886  AEKRFTVKLPDGPPGVTTELSGAVDRLERDLHGRLHVVDIKTGKTPISAAEAET--NPQL 943

Query: 938  SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            +    A++AG+F++    +      +      K   +       S D+ S    K L 
Sbjct: 944  AAYQVAVEAGAFAEHG-LEAGGATLVYPASSTKAASVREQPALPSVDDPSWAHRKVLK 1000


>gi|323697652|ref|ZP_08109564.1| hypothetical protein DND132_0232 [Desulfovibrio sp. ND132]
 gi|323457584|gb|EGB13449.1| hypothetical protein DND132_0232 [Desulfovibrio desulfuricans
           ND132]
          Length = 974

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 128/950 (13%), Positives = 273/950 (28%), Gaps = 129/950 (13%)

Query: 8   VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67
           V  I   + F   +   +                     +T+  P  R  + L+      
Sbjct: 4   VLLIPWQTDFMPVLADKVAAS-------------DAPGKLTVLFPHNRPRRHLKGLLAAH 50

Query: 68  TG-KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
              ++   +P + S+ D V         L  +L P        L+L  ++      L   
Sbjct: 51  PAMQRPAFMPEMTSIADFV-------AGLHRDLAPAPPVRANQLDLVEMLRRIVADLRGR 103

Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
            K L    P          +     LA ++D +  ++ + +DL  +   +   +     +
Sbjct: 104 RKGLLARLPELDREP---FLPWGMLLARLMDDLLRQDLEPQDLEYM-EGEVSAYAAALLE 159

Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            L+     +                  L R +A            +            L 
Sbjct: 160 QLRAIHTEY------------------LARLDARGWTTPGLSARFV---------LDHLD 192

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
                     ++  G                                Y+L+   D L   
Sbjct: 193 EAAETLRGRTLLAAGF-------------------------------YALSGTEDRLFRD 221

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK---CFSDVALIE 363
             +   L  + +     +      +   + +       +  ++           D+   E
Sbjct: 222 LWERGILTPLLHSDPALAEGGRAHWATAEHTAWLARWGVRPELVPGLDTTPRAPDIRFCE 281

Query: 364 ADNEREE-AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN--IDISAGIP 420
             +   + A        +   +  +++A++  D      V   L         +IS G P
Sbjct: 282 GFDRHSQLAGLTGDMGELLARDTLERTAVVLPDEGALLPVLHLLPEVDPELEPNISMGYP 341

Query: 421 LSTTLHSSILTSLLNAIFKL----NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
           L+ T  + ++ +LL            +  +  L++HP  +    E    R         +
Sbjct: 342 LARTSLARLIETLLVLRENRENSRCYWKDVVALIRHPYLRLLGSENRPLRPVFQFWEAII 401

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
           R      D +  +    D      +                E   LL + + +C+T   +
Sbjct: 402 RRGDKFLDPLAWEPDWDDDALKDVDR--------------AEAGPLLAEVLDRCLTGFAS 447

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
             T          ++         L +  L +   L  L      +   +          
Sbjct: 448 ATTLAQLGEALAGLAAMLHARGEKLWHTYLLDAECLFRLTNSVIPQLKGAEICF------ 501

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
               +      ++ R++D E V  + +  + L +LG LE+RLL+FD L +    E   P 
Sbjct: 502 -EPLDQSTLHAMLRRMLDQERVSFEPDPLTGLQVLGVLETRLLHFDKLFILDAVEERLPG 560

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLREN----NIPTI 711
               +P L   ++  L L  A +    + ++F     G R  +            +  ++
Sbjct: 561 TNPFDPLLPDPLRRLLGLPDAHERDNVSGYNFYRLLMGAREAVIYYQNGVQPGLLDQKSV 620

Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLD---WTRKLDYTTKQPHYKR-PKPFPPLEAQP 767
            SR++++LL          L                L    +        +         
Sbjct: 621 RSRFVEQLLWERELSAGRLLTPEDGIVRTVTFPAGALPAGPEPVPATEGGRRALTAFLTA 680

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
           +  S S +   +N P   + + +  +  +    ++ DR++ G+L H+++ + +   +   
Sbjct: 681 KGLSPSALDTYMNCPKRFFYQYLSGVRPVDSVDEEGDRSEFGSLVHDVLKKFLLPHVGTG 740

Query: 828 TPEI---NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                     +       F    L   + +  R    +     LE     Q     + + 
Sbjct: 741 EDLAGLDPAPLLTAFSETFRAGPLFARLPLDTRTALMEAGRYRLEQFVAAQQPATLLGLE 800

Query: 885 IPAKMAI--ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
            P +  +  + + I   G  DR++  ++G V I DYKTG     +     
Sbjct: 801 QPLEGVLAQDGLDIPFKGRMDRVERRENG-VFILDYKTGGAQLPKARFWG 849


>gi|317125679|ref|YP_004099791.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043]
 gi|315589767|gb|ADU49064.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043]
          Length = 1053

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 119/1003 (11%), Positives = 262/1003 (26%), Gaps = 106/1003 (10%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV-S 104
               +    + A   LR          ST   + ++   +      A+  L  +  P + +
Sbjct: 62   ECLLLAAGRTAAGALRERVTARLAGTSTQS-LARTWQALGFGILRAEAALRGDPPPRLLN 120

Query: 105  NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
              ++   L  L+    +       D    +                 L D++       +
Sbjct: 121  GPEQDAILRDLLAGHASG------DAPGPAWPESVRDALATRGFRNELRDLLMRAVEHGQ 174

Query: 165  KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE---- 220
              ED+  L  E     W+ AA  L+   +     L    A  P     +      +    
Sbjct: 175  GPEDVLRLGVEHDRPEWVAAAQVLREYDEV--TALSRHGAYDPAWVLTSAADLLEDDPSA 232

Query: 221  -HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +      +++  +     A ARL+  V+    G  ++   D       +     +  
Sbjct: 233  LARLHERLRLVVVDDAQEMTSAAARLLRVVSR--GGLRIVLLGDPDSAVQTFRGADPRFL 290

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                 +              +        +   L          + V S+          
Sbjct: 291  AHGWESLG------------VSRPGAVPRETVVLSVGHRLPAPVADVASRVVRRIGALGG 338

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADR 396
                 ++          + V +    +  +E   IA  LR +           A++    
Sbjct: 339  GEQRSVQPAPGR-----ATVDVALLRSVAQETSHIASVLRRAHLVEGVPWTEMAVVVRGS 393

Query: 397  NLARRVKLELTRFGINI-DISAGIPLSTTLHSS-ILTSLLNAIFKLNDFMAIATLVKHPL 454
              A  ++  L + G+ +   +A  P+        +LT L  A+        +   V    
Sbjct: 394  GRAATLRRALAQAGVPVGAATAETPVRDENAVRPLLTLLGEAVRIARGPRHVLDPVTVTD 453

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                      +     L  V  R             L+ + +        +       + 
Sbjct: 454  LVLSPIGGSDTVGLRRLRRVLRREELADGGGRSSDELLAELVRNPLWAGRLGEVGRPAAR 513

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                LA  +   ++          T ++        +                  R   +
Sbjct: 514  VAGALAAGVEAALVGADGRWGAGVTAESVLWAIWQGAGVADAWRRQALAGGPGAERADRD 573

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
            L         +  F   + +    K        I+ + + G+T+    +  + + ++   
Sbjct: 574  LDAVLGLFDAARAFVDRLPSAGPDKFV----EHILGQDVPGDTLLVGGQTGAQVSLVTPQ 629

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
             +    +  +++ G+ EGVWP    +   L      D+  +    +    A         
Sbjct: 630  SAAGREWRLVVVAGVQEGVWPDLRLRGSILGSEDLVDVVGQRPVGFRAAQAAVRYDETRL 689

Query: 695  RHLIYTRSLRE------NNIPTIASRWLQRLLVLGGTDFFDNLKK-----RGQCYLDWTR 743
             H+  TRS          N     S +L  +    G    D ++      R         
Sbjct: 690  FHVAVTRSTERLLVTAVGNEDEQPSVYLDLVDPPEGGRLADEVRPHTEVSRPMSLPGLVG 749

Query: 744  KLDYTTKQPHYKRPKP-------------------------------FPPLEAQPRTYSF 772
            +L      P     +P                                   E +P   S 
Sbjct: 750  ELRREVVSPDPGVAEPALALLAAAAAADVRGADPGRWWALRDVTTDQPVRREGEPVHVSP 809

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            S++          +   +                  GTL H+I+ E              
Sbjct: 810  SKVTYFSECGLRWFLTSVGGDGP------SLGAASVGTLVHDIVAE--------RPHATR 855

Query: 833  HLMKQIIDSHFEKENLPPH-IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
              +   +D+ + +  L    +    R   H +   ++ + E +    E + +    ++ +
Sbjct: 856  EELVAEVDARWGRLGLRRGWVTERTRREAHDMVSRYVAYRESVAREWEPVGIETEFRVTV 915

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFS 950
                  + G  DRI+  + G + I D KTG + P +    +    QL     A+ +  F 
Sbjct: 916  GRA--VVAGRVDRIERDRQGRLRIVDLKTGTSKPTQAELAQHG--QLGAYQVAVASQGFP 971

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
             +   + A    + + +            + +  +  +     
Sbjct: 972  TLGA-ESAGAALVFIGKGGLSGLRPAVLSQPALADSDDPDWAR 1013


>gi|119503959|ref|ZP_01626040.1| hypothetical protein MGP2080_09423 [marine gamma proteobacterium
            HTCC2080]
 gi|119459962|gb|EAW41056.1| hypothetical protein MGP2080_09423 [marine gamma proteobacterium
            HTCC2080]
          Length = 875

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 98/709 (13%), Positives = 207/709 (29%), Gaps = 87/709 (12%)

Query: 364  ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR----------FGINI 413
              + R E++++A        +N   +A++  D N  R       R            + +
Sbjct: 193  FPSRRAESMAVAKWAAQRHRDNAGSTAIVLLDFNRDRPELEYQLRQEFDCLGARYAALPV 252

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLND----FMAIATLVKHPLAKFGFPEKYLSRAKN 469
            + S+G+PLS T         L      +        +  L++ P    G     ++    
Sbjct: 253  NFSSGMPLSKTPMFRDALMALRVASAYDSVALLRSEVLALLRSPFLHGGEDLDGIALL-- 310

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                              L+    D  +   +   + H     + E              
Sbjct: 311  -----------------QLRKACTDLTSEHIDKRDLNHLAETFAPEAH------------ 341

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             +T +        ST G    S W  +  + L+         L +L +++  +   +L  
Sbjct: 342  -LTQVFKTLRTDRSTRGKRLPSRWLDVIRSVLRLWQWPGRAALDSLEYQQFERLEVALDE 400

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
             +++     + +  + I +  + +D   V     +   + + G  E   L FD L + GL
Sbjct: 401  LVMQDCITGELSFQQVILLWEQCLDDR-VFQPKTEEGAVQVFGPQEVVGLRFDALWICGL 459

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
              G+ P+     PFL   +Q  L L  ++           +A     +    S R  +  
Sbjct: 460  QSGLLPQRPQLLPFLPNWLQRHLGLLNSD----------SVALEASAVALLNSFRATHGE 509

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK--PFPPLEAQP 767
              AS   +   +                         +    P     +           
Sbjct: 510  VRASYASEHEGLEILPSHLARPIASDDSPTQQQAPKHWPEPSPLELLDEGNVVVGDADIQ 569

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
                 S I    N P+  +    L    +          +RG + H+ +    +   + +
Sbjct: 570  WGGGASLISNQSNCPFRAWVSHRLGPADVAAPVFGLTPAERGNIVHDALRFTWEILKDSH 629

Query: 828  TPEI--NHLMKQIIDSHFEKENLPPHIDI-----------------IWRHLFHKISHSFL 868
            +        ++ +     E+                          +       + +S+L
Sbjct: 630  SLRAMNATQIESLTRESTERAVQALERRAERRHCNVRKRVGSACLDLEIQRVAALLNSWL 689

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKE 927
            E E + + +   I      ++ +    + L    DRID L+ G   + DYKTG       
Sbjct: 690  ELEAQREGNFSVIEQEDSHELTL--GSLILNLRPDRIDQLEGGRQVVIDYKTGAVHRSSW 747

Query: 928  TAQKLIDPQLSLEAAA---LKAGSFSQIDCRKVANLFY---IRLKQKFKIDCITNDKKKY 981
               +  D QL L A     ++  +F ++    V  +F    + L  K         + + 
Sbjct: 748  LGDRPSDAQLPLYALLNDSVEGVAFGRVHQEGVEYVFLGEALGLGGKELPLEDQVKRYEV 807

Query: 982  SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
            +  E  E+  +     +  L +      + +    ++        + R 
Sbjct: 808  APLESWEELRRTWRGRLERLADDFVRGHAAIDPQPQACRYCALGSVCRY 856


>gi|225574651|ref|ZP_03783261.1| hypothetical protein RUMHYD_02728 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038119|gb|EEG48365.1| hypothetical protein RUMHYD_02728 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1111

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 113/1016 (11%), Positives = 278/1016 (27%), Gaps = 139/1016 (13%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I VP +  +Q  +   +++      +   + S   +    F     +  +  P +    
Sbjct: 35  VILVPEQFTMQT-QKRLVQMHPGGGILNIDVLSFERLAYRVFE---EVGGDDAPLLEETG 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
           + L L +++   + +LP +   +     +             + +  ++  +   +   E
Sbjct: 91  KSLVLQKIVQDKKKELPYLGVQMKKPGCI-------------QEMKSLVSELMQYDVGEE 137

Query: 168 DLHALK-NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
            L  L    +           +    + + E L E   +        ++    E   K  
Sbjct: 138 TLGELVKRSEDQALLHCKLQDIHRIYEGFREYLKERFLT--GEEVPDVLCRVIEKSKKFQ 195

Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
            G  ++ G TG  P   +L+  +        V   +D          +  +  +      
Sbjct: 196 GGIFVLDGYTGFTPIQNKLIRELMLLGEQVYVTVTMD----------VKAQRLSGKYQLF 245

Query: 287 TYSTHPQYSLAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
           + S   +  L KL     + +++E     G  S       +   +  L      +   + 
Sbjct: 246 SMSGKMRDQLLKLAGEARVAVEKEQWVLPGENSRFGKNPELNFLEQHLFRYHRVVYEREP 305

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
               +   +    +V           A  I   +R       + + +     +     + 
Sbjct: 306 QALALTRWENPLQEVKGT--------AAEILRLVREKGYRYGEIAVITGDLPSYGTYARQ 357

Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             ++  I   I     +        L + +  I     + +    ++  ++     E   
Sbjct: 358 VFSQAQIPYFIDEKHSILMNPFVEFLRAAVEMIVDRFSYESCFRYLRCGMSSLSLEEID- 416

Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                 L+          Y       + L     ++    +  ++ +  +E   L     
Sbjct: 417 -----ELDNYVTALGIRGYSKWKETWVRLYPGLDEERILELNRYREQFLKEISWLVQGFR 471

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
             +              +       +           +        K     + +    +
Sbjct: 472 GGVKTVRERSCALYQFISDNEMQEKL--------KIQELEFAGRKDKAMEKEYAQIYGIV 523

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             L  K++E     K +A E+  ++   +    V      S  + +     +RL     L
Sbjct: 524 MRLLDKMVEILGDEKVSAREYQQLLEAGLTEAKVALIPPSSDQVLVGDMERTRLKEIKVL 583

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTRH-- 696
              G+NEG  PK++++   L+++ +             A + +GQ+     +        
Sbjct: 584 FFLGVNEGNIPKDSSRGGLLTQMDREFFQEEKIELAPDARELLGQSRFYLYLNLTKPQDF 643

Query: 697 LIYTRSLRENNIPTIASRWL----------QRLLVLGGTDFFDNLKKRG----------- 735
           L  + S        +++ +L           RL    G+      +  G           
Sbjct: 644 LYLSYSQANAKGEGLSAAYLVGTIQKLFPALRLRCGQGSSLEGLQRPSGSLDYFLEGLQE 703

Query: 736 --------------------QCYLDWTRKLDYT---TKQPHYKRPKPFPPLEAQPRTYSF 772
                               + Y     +L                    L  +   Y  
Sbjct: 704 YEYGQETKVWRELYRWYQKDESYRPQVNRLVEAFFSENPQDRISKAVAKALYGEVSPYGA 763

Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---P 829
           + ++Q     +A + R  L++      + +    D G + H  +    +K  ++      
Sbjct: 764 TRLEQYAACAFAHFLRYGLQVTER--VQYEFSGMDLGNVMHKALEIFARKVRDQRLSWGE 821

Query: 830 EINHLMKQIIDSHFEKENLPP--------HIDIIWRHLFHKISHS--FLEHEEKIQSSIE 879
                 ++++    ++               +        ++ +   +   E+  +   +
Sbjct: 822 LSREDRERLVSESLQEVTEDYGNTILHSCARNEYLIRRTQRVLNRTAWALQEQLRRGDFQ 881

Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSG---FVDITDYKTGDNP-KKETAQKLIDP 935
                +  +           G  DR+D+ +     +V + DYKTG+           +  
Sbjct: 882 PEGFEVAFEG----------GRIDRVDICEDENKVYVKVMDYKTGNVSFDLVALYHGLQL 931

Query: 936 QLSLE---AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
           QL +    A  ++   +        A +FY  +K       I  D  K     L E
Sbjct: 932 QLMVYLDAALLVEQKKYPD-REVIPAAIFYYNIKDPMIKASIEEDIGKVEQKILRE 986


>gi|126434058|ref|YP_001069749.1| UvrD/REP helicase [Mycobacterium sp. JLS]
 gi|126233858|gb|ABN97258.1| UvrD/REP helicase [Mycobacterium sp. JLS]
          Length = 1051

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 116/1022 (11%), Positives = 272/1022 (26%), Gaps = 135/1022 (13%)

Query: 60   LRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-VSNIQRLLELARLILI 118
            +    ++   ++    P+++++              + +  P  +++ ++   +  L+  
Sbjct: 76   VTRRLLDGGARQVVRAPLVRTVHSYAFAVLRLAAQRNGDAPPRLITSAEQDGIIRELLAG 135

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
                      D    +  +           A  L D++            L  L      
Sbjct: 136  DLED-----GDRSAVAWPAALRPALTTAGFATELRDLMARCTERGVDPVALQRLGRLSRR 190

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238
              W  A  F +   +              +    + +   A        G   + G+   
Sbjct: 191  PEWAAAGRFAQAYEQ--------------IMLLRSAVGMAAPQATTPALGAAELVGAALE 236

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
              A    +        G +++       P A        +    S          +    
Sbjct: 237  AFAMDADLLAAERSRIGLLLVDDAQHLDPQAARLVRVLAAGADLSVFAGDPDQSVFGFR- 295

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFS 357
                       +      +  +       S           R      E           
Sbjct: 296  -----GADPALLHMEEGSAVVLTRSHRCASAVARAISGIARRLPGQRQEFVGSEDGGGDG 350

Query: 358  DVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINI 413
             VA+  A     E+  IA ALR +   +     + + ++ +       +   LT  G+ +
Sbjct: 351  SVAVRVAATAHAESALIADALRRAHLVDGVAWSEMAVIVRSLPRAGAPLARALTAAGVPV 410

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            D+ A  PL     +  L ++L A            L+  P+ +         R       
Sbjct: 411  DLPAAAPLVEEPAARALLTVLEATADGLTGAQAEALLSGPVGRVDPVTMRQVRRALRRAD 470

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
             +    + +  +++               T      S +S E +     +   +      
Sbjct: 471  GSQPPREFTDLLVE-------------ALTGPLPAASDVSAELQRPLRRVRSVLAAARRS 517

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            +      +++       S   +  +   +       R   +L        ++  +     
Sbjct: 518  VDDGLDPRHTLWQAWHRSGLQRRWLAASERGGAAGARADRDLDAVTALFDVADQYVTRTA 577

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
              S         +D +  L      + +      + +L    +    +D +++ GL EG+
Sbjct: 578  GASV-----RGLLDHVAALGLPPGRRGERRDPEAVAVLSAHAALAGEWDFVVIAGLQEGL 632

Query: 654  WPKNTAKNPFL----------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            WP    +   L                S  + +   L   E+ +  AA         R +
Sbjct: 633  WPNTIPRGGVLGTQRLVDVLDGVTDSASDAVSTRAPLLAEERRLLIAAF----GRARRRV 688

Query: 698  IYTRSLRENNIPT-IASRWLQRLLVLG-GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
            + T    ++     + S + Q L  L    D       R    L  +  +          
Sbjct: 689  LVTAVDSDSGAEALLPSPFCQELTALATDPDDGPPAPLRAPRVLAPSALVGRLRAVVCAP 748

Query: 756  R---------------------------------------PKPFPPLEAQPRTYSFSEIK 776
                                                     +P    E Q  T S S ++
Sbjct: 749  DGAVDDAARECAAAQLARLAAAGVPGADPGQWHAMTTLSTDEPLWNDEQQVVTLSPSTLQ 808

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
             L + P      R    D           +  G+L H +++E       +   ++ + ++
Sbjct: 809  ALTDCPLRWLLERHGGRDGRDVR------SAVGSLLHALVSE-----PGRTESQLLNDLE 857

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG- 895
            ++      +                 +  +F +   + +  + ++   I     +     
Sbjct: 858  RVWADLPYEAQWHAD---NELTRHQAMLSAFEQWRAQTRRELTEVGTEIDVDGVVCDADD 914

Query: 896  ----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
                + + G  DR++   +G + + D KTG +P  +        QL++   A+ AG  ++
Sbjct: 915  GRPAVRVRGRLDRLERDSAGRLVVVDIKTGKSPVTKD-DAQRHAQLAMYQLAVAAGLLAE 973

Query: 952  IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
             D      L Y+    K      T  ++     +   +  +++ E     Q     F++ 
Sbjct: 974  GDVPGGGKLVYL---GKSGAAGPTEREQDALTPDTVAQWRQDVGEAAAATQGP--GFVAR 1028

Query: 1012 LR 1013
            + 
Sbjct: 1029 VN 1030


>gi|260887199|ref|ZP_05898462.1| ATP-dependent nuclease subunit B [Selenomonas sputigena ATCC 35185]
 gi|260863261|gb|EEX77761.1| ATP-dependent nuclease subunit B [Selenomonas sputigena ATCC 35185]
          Length = 1151

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 112/968 (11%), Positives = 244/968 (25%), Gaps = 139/968 (14%)

Query: 45  ASVTIYVP---TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
           +++ + +P   T RA + L      +              G                   
Sbjct: 39  SALVLLLPEHATYRAERRL----AAMMAGAGEGFVRGLVFG-FKRFARHVLQETGGAAAA 93

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            ++++ + L L R++      L    +              A      + L   ++ + +
Sbjct: 94  RITSVGKRLLLKRILAEEGESLQAFAR-------------AAKQRGFTQTLERAMEEMRS 140

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                + L   +              L +    + E++      +  G  +  +  +   
Sbjct: 141 YGIDGDALLQAQPALADDDLCRKLADLALIYSRYREKMA--GRYNDTGDMLDALAEKIPS 198

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                   + + G +   P   ++++ +        +    D            E +   
Sbjct: 199 SRLLEGAEVWVDGFSFFNPQERKILAALFQKAKNVHITLTFDP---------TDEAAMQR 249

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
             S           L +L   + I              +  R    S +    + +    
Sbjct: 250 EGSLFYRQAQTLQQLRRLAQEMQIPVRV--------RSLEERRRFQSDALAAIERTAFSF 301

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNL 398
             + +          + VAL+EA   R E  + A  +     E     +  A++T D   
Sbjct: 302 PLVPQ-------AGAAGVALVEAATRRLEMEAAAADIVRLCREKGLRWRDIAILTRDEAA 354

Query: 399 ARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
              +    L   GI               + ++ S    + +   + A+   +K    K 
Sbjct: 355 YGDMLALTLEDCGIPYFRDNKREGVHHPLAELVRSAFEVL-RGWRYDAMFRALKTGFFKK 413

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
              +  L         +         D    +   LD                  S   +
Sbjct: 414 TRGQIDLLENYVLEFGIRGSSWTMEEDWHWHRRRSLDEEEEGATQKEAERLCQINSC--R 471

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                 +      +    T +    +    L   D  +              R   +   
Sbjct: 472 RAVAEPLQEFAAQVKAASTVRGYAEALYRLLLALDVPQTLERWADE-AEKAGRLAESREH 530

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            +    + SL  ++ ET         E+ D++   +D   +         + +    ++ 
Sbjct: 531 RQIWDDVISLLEQMAETSGDETIKVREFEDVLGDGLDALQISLIPPGLDYVTVADFDQNS 590

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ---SDLNLKTA----EKYIGQAAHDFEM 690
           + N   + + G NEGV P+ + +   LS   +    +  L+      E    +    ++ 
Sbjct: 591 VENARAIYILGANEGVMPRRSQEKGLLSDADRLHLKEAGLELPQGSVEGSFNERFLLYKG 650

Query: 691 ANGTRH-LIYTRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKRG----------QCY 738
               R  L  + +L +      + +  L ++  +        +   G          Q  
Sbjct: 651 FTEARDYLWVSYALADTEGKALLPASLLGQIRTVLPAVSLQTVPLEGAERRLFAGGRQAV 710

Query: 739 LDWTRKLD--------------------------------------YTTKQPHYKRPKPF 760
                 L                                       +   +   K     
Sbjct: 711 TALAAALRSYREKGTLDPFWCDVYNWALGERKMSIVLQKVLQGIFSHAAAELLPKELAAA 770

Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL- 819
              + +    S +  +     P+  +AR  L L             D G L H  + E  
Sbjct: 771 LYTKNRRLRGSVTRFESFRACPFQHFARYGLHLAER--PAHGFRTLDLGVLLHAALREFG 828

Query: 820 ---------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLE 869
                     +    +   EI H +  ++    + E L              + +   L 
Sbjct: 829 ERLKKDGRRWRDVGEEECGEILHEILGLLAPRLQNEILLSSKQYENLLVRIEETAKKALV 888

Query: 870 H--EEKIQSSIEKIFVNIPAK-----------MAIESIGIHLTGFADRIDLLKSGFV-DI 915
              E    S    +                     +   + +TG  DRID+ ++G    I
Sbjct: 889 RLIELDAASEFRPVAFERSFGRGAGSLPPLTYALADGSSLEITGQIDRIDMDEAGRYFLI 948

Query: 916 TDYKTGDN 923
            DYKTG  
Sbjct: 949 LDYKTGAA 956


>gi|313904429|ref|ZP_07837806.1| ATP-dependent nuclease subunit B [Eubacterium cellulosolvens 6]
 gi|313470765|gb|EFR66090.1| ATP-dependent nuclease subunit B [Eubacterium cellulosolvens 6]
          Length = 1155

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 116/1005 (11%), Positives = 273/1005 (27%), Gaps = 148/1005 (14%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                  +     +  +  P + +I + L + ++I   + KL  + + L     +S   S 
Sbjct: 66   SFNRLAWRVFAEVGGDDLPVLEDIGKSLIVQKVIAARQEKLKVMERALGRPGAVSQMKS- 124

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAADFLKIASKYWTERL 199
                        +I  +     + EDL          +     L  + ++     + + +
Sbjct: 125  ------------LISELMQYRVEPEDLDEWIRRGEAAHRGRLSLKLEDIRTVYTAFRDYI 172

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
             E   +         +              I++ G TG  P   +++  + +      V 
Sbjct: 173  DEHYLTKEEV--PERLCHVIGDSTLVKDSVIVLDGFTGFTPVQHQVVRELLSLA--LKVR 228

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              L       +    +E              H  Y + +    L + +E       ++  
Sbjct: 229  VVLTVPSSEELERGKSEHRLF----------HMSYEMYR--KVLGLAKESRC---EIAPV 273

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
             +  +    +    P  + +        +         ++ + +A +  +E   IA  + 
Sbjct: 274  RWIEAGEKGRFAGSPALAYLEQNLFRSRRREAYAGEQKEITVTQAKDPEQEIRMIAEQIL 333

Query: 380  MSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              +       +  A+++ D +   R+     +  GI   +     + T      + S ++
Sbjct: 334  RMVRREGYRYRDFAVVSGDLSTYGRLAENVFSECGIPFFVDQKKAVMTNPMVEFIRSAID 393

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             + +   + ++   ++  L              + +E              D       R
Sbjct: 394  MVVQNYSYDSVFRFLRTGLGDLS------REETDRMENYCRALGIRGRKKYDESWTRCPR 447

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
               +         + + ++E +E    +        +                 +++   
Sbjct: 448  YMDKDELLLYNEIREKFADETREFHEAMHRRNTTVKSKAEAVYRLLAGHGIQRKMAEMKL 507

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                    V            + +    +  L  KI+E     K    ++  I+    + 
Sbjct: 508  CFQENGDAVSAG--------EYGQIYGAVIDLLDKIVEVLGEEKMKLADFQSILDAGFEE 559

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-- 673
              +         +       +RL     L   G+NEG+ PK  A    LS   +  L   
Sbjct: 560  INIGLVPPGEDQVMTGDIERTRLRKIRVLFFAGVNEGIVPKPVAAKGILSEHDRQILAGD 619

Query: 674  ----LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRE-NNIPTIAS-------RWLQRL 719
                  T+++ + Q      ++    +  L  + S         + S       R   RL
Sbjct: 620  SVELSPTSKEQMYQQRFYLYLSMTKPSDRLCLSYSRSGVEGGALLPSYLIGVVKRLYSRL 679

Query: 720  LVLGGTDFFDNLKK------------------------RGQCYLDWTRKLDYTTKQPHYK 755
             +    + +                              G  + +  R L  + +     
Sbjct: 680  EIRSAEEIYRKDPTLLLETPKGRMSLLLQGLQKIPDELPGADFNELLRTLWQSEEGREEA 739

Query: 756  RP----------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
            +                 +    L       S + ++      +  +    L+L      
Sbjct: 740  QRLLSAVSTKNPAKGIGMQLARMLYGDKLQVSITRLEDFAECSFRHFLDYGLRLRERE-- 797

Query: 800  KKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDSHFEKENLP------- 849
            + + +  D G++ H  +    K       +     +    ++ D   ++           
Sbjct: 798  EYEFNAADYGSILHKALERYAKILGKREIRWGTLGDGERNRVADEALDEVAFDYGNTIMQ 857

Query: 850  -PHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKM--AI--------ESIGI 896
                +        +I H   +   E+    S E        +    +        +   +
Sbjct: 858  SSQRNRHMLERIREILHRTVWALDEQIRMGSFEPTDFEFRFRTNEEVKSLHFSLEDGTEM 917

Query: 897  HLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQI 952
             LTG  DRID    + G    I DYKTG            +  QL++   A+        
Sbjct: 918  KLTGTVDRIDDCRTEGGHYVKIIDYKTGKTTLDLGQLYYGLQLQLTVYLNAVMECRQKAE 977

Query: 953  DCRKV--ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
               +V  A +FY  +   +         +  + D+  E+ LK L 
Sbjct: 978  PGAEVLPAGIFYYHIDDPWI--------EPTAEDQRLEEILKKLR 1014


>gi|291613180|ref|YP_003523337.1| hypothetical protein Slit_0711 [Sideroxydans lithotrophicus ES-1]
 gi|291583292|gb|ADE10950.1| conserved hypothetical protein [Sideroxydans lithotrophicus ES-1]
          Length = 869

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 110/767 (14%), Positives = 239/767 (31%), Gaps = 66/767 (8%)

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             E+     +     +   + +   L          +++             V     +  
Sbjct: 160  GEELDAGRAYQQRLAKLAEQARQPLFVLRTSDWCALEQRFLDEYAGRAAVEVFDLRKMDA 219

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
                + +      +  +I      +    A +  +EA + A+ +R+ L   K+  A++  
Sbjct: 220  QWGSLLHESSAGLRSQSIASLGGKLGFFAATSLEQEARAAAMQVRLWLQAGKRDIAIVAQ 279

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
            DR +ARR++  L R  I +    G   +T   S++L   L A+        +  L+K P 
Sbjct: 280  DRVVARRMRALLERAEIMVADETGWTFATLSVSTVLDRWLTALQSDFYHHDLLDLLKSPF 339

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                        A   LE +  +                                     
Sbjct: 340  IFADMTASERKSAVYQLEQLLRKQGVV--------------------------------- 366

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGN--LSISDWTKLTVTCLQNVCLDEHRKL 572
               E    LV+H      PL   +        +   ++++W       LQ + +D     
Sbjct: 367  AGLEKFSALVEHETVLHQPLARLRQAAALLEQHKKRTLAEWLAALRESLQVLSIDSGLLQ 426

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
             +   +  G   +       + G        EW   + + +            S +    
Sbjct: 427  DDAGMQLLGALETWQQELTADEGR---YRFPEWRRWLAQQL-DTQTYRDNSIDSQVRFTH 482

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
               +R   FD ++L G +    P       + +  ++S LNL T      +   D     
Sbjct: 483  LAATRWRAFDAVLLLGCDADHLPSVADGGRWFNDAVRSSLNLPTRAINAERQRDDLLSLL 542

Query: 693  GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
                 +     ++ N           +L       + +     +       +     + P
Sbjct: 543  ALNDCVLVTWQKDRNGEAGLLSPYLEILRDLHLLTWGDDLAESELPAYLAAEEARAVELP 602

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
               +P P    E  P   S S    L+  PY  YAR IL+L+ +   ++  ++ D G   
Sbjct: 603  QSAQPAPVVQKEIIPTGVSISAYNSLVACPYQFYARHILRLNELDEVQEGIEKRDYGERV 662

Query: 813  HNIITELIKKRI---NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            H I+    ++       +   +   ++QI +  F            W   + K   +++E
Sbjct: 663  HAILQRFHERYPRVSEHSRDTMEVALRQISEEVFADLLQQDFEARAWLARWFKALPAYIE 722

Query: 870  HEEKIQS-SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT--GDNPKK 926
             +   ++     +         +E  G+ L G  DR+D+       + DYKT      + 
Sbjct: 723  WQMVNEAQGWRYVESESAFDWELE--GVRLRGRIDRLDMNGQQK-RVLDYKTQSDQVLRN 779

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
            +  +   D QL+                 + A+  ++ ++       + + + +     L
Sbjct: 780  KLREPGEDVQLACY-----------AYAHEAADAAFLSIESGK----VKSVEPEGDVPLL 824

Query: 987  SEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033
            ++ + + L++++  ++ G     ++    ++  I  E   + R  EW
Sbjct: 825  AQLNAERLVQVMGKIR-GGTGLPANGI--DQVCIHCEMRGVCRKGEW 868


>gi|160895395|ref|ZP_02076165.1| hypothetical protein CLOL250_02953 [Clostridium sp. L2-50]
 gi|156862966|gb|EDO56397.1| hypothetical protein CLOL250_02953 [Clostridium sp. L2-50]
          Length = 1128

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 123/940 (13%), Positives = 264/940 (28%), Gaps = 150/940 (15%)

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD--FLKIASKYWTERLVELN 203
            +     +  ++  I     K + +  +  E+     ++A     ++   + +     E  
Sbjct: 116  LGFVDEMKSMMSEIFQYNIKQDTIDEI-MEQISEDSVVAGKMQDIRHIYEEFEAFAGERY 174

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                    + L+              +   G TG  P    L+  +    +       LD
Sbjct: 175  IV--AEQLVELLTRHVGQSKLVCGSSLYFDGFTGFTPVQLELVEKLMTCADDLTFSFTLD 232

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +  I +      +  T         L +      ++ E    L    N   G 
Sbjct: 233  D--RDQKYEHIKDYELFYLTKTTIKK------LTEAAAAAGVEIESPVVLPGTINYRLGE 284

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
            +  +               ++  +     ++    + L    + ++E + +A  +R  + 
Sbjct: 285  NRELFFLER----------NLFRSPYQKWKQPLERIHLTATGDAQDEIVFVASTIRRLVR 334

Query: 384  ENK---KKSALITADRNLARR-VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
            E     K  A++  D   A    +  +  + I + I A   L     +  + S+L  +  
Sbjct: 335  EKGYRYKDIAIVAGDLEQASHIYERVMDEYEIPVFIDANACLKANPCAETIRSVLAVLAD 394

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
               + ++   +K  +    F +  L            RG +                   
Sbjct: 395  DFSYDSVFRFLKAGMTDLSFEDIELLENYA-----LKRGVRGYSRWN------------- 436

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV- 558
                 V     + S  + E        +   I  +   K                ++ + 
Sbjct: 437  ---RAVSENYEKTSPVNIEEIRQAFMKMFGDIRKVFADKKAVTKDYVEALYDFLLQIHMY 493

Query: 559  ---TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                  +N   +E+R      + +  +    LF KI E     K +  E+ +I+   +  
Sbjct: 494  EKLEARKNELYEENRINEGDAYGQIFEKTVRLFDKIAELLGDTKMSVKEFYEIVDTGLSD 553

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS----- 670
              V         + I     SRL +   L    +N+G+ PK   K   LS   +      
Sbjct: 554  IEVGVVPPTVDRVLIGDITRSRLNHIKVLFFTSVNDGIVPKAPKKGRILSDRDRDILSDC 613

Query: 671  DLNLKTAEKYIGQ----------------------------------------------- 683
             L L  ++K                                                   
Sbjct: 614  GLELAPSDKQNSYIEQFYIYTILTKPSDYLYISYHKLSASLESMRPSYLLGRISSIFPSL 673

Query: 684  AAHDFEMANGTRHLI---YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
             A +++ A+     +     R LR  +     SR L R+L   G         +G+ Y +
Sbjct: 674  QAEEYDAASCMPDTVNRSLRRILRAEDSEDAESRILTRILTEKGFAGELTAIYKGRTYRN 733

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
               +L           P+    L  +    S S+++      +A + +  L+L       
Sbjct: 734  VAEQL----------PPETIALLYGRYLHASVSKLELYARCGFAYFLKYGLRLKEREM-- 781

Query: 801  KDPDRTDRGTLFHNIITELIKKRIN------KNTPEINHLMK------QIIDSHFEKENL 848
               D  + G + H+++  L K+  +      +N PE   ++       +  +        
Sbjct: 782  YQVDVRNVGVILHSVMEGLFKQVRDTRNNDWENFPEDERMLMVTELVNRAAEESAGDFFE 841

Query: 849  PPHIDIIWRHLFHKISHSFLEHEEK--IQSSIEKIFVNIPAK----------MAIES-IG 895
                +     +  +++ +     +K     S++   +                 + + I 
Sbjct: 842  DNARNAYMLQMIERMAQTSAGMLQKHIRLGSMKPGMLEKTFDSAKDEVGSYLFELPNQIQ 901

Query: 896  IHLTGFADRIDL-LKSGFVDI--TDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQ 951
            + + G  DR+D+  + G V I   DYK+       E        QL   +A         
Sbjct: 902  MSINGKIDRVDVEEEDGTVYIKVIDYKSSARKLSLEEILNGEQLQLVTYSAIAYEIEKMI 961

Query: 952  IDCR--KVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
               +  ++A L Y            +         E S++
Sbjct: 962  YPDKNIQIAGLLYYSFDDPVIEIESSEIDTDTEQPEFSDQ 1001


>gi|160934432|ref|ZP_02081819.1| hypothetical protein CLOLEP_03305 [Clostridium leptum DSM 753]
 gi|156867105|gb|EDO60477.1| hypothetical protein CLOLEP_03305 [Clostridium leptum DSM 753]
          Length = 1125

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 107/922 (11%), Positives = 252/922 (27%), Gaps = 130/922 (14%)

Query: 149 AKNLADIIDIIETE----EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
           ++ L +++     E      + EDL A  +               +    +   LV  + 
Sbjct: 113 SRELVELMLSALKEFKMCGIRPEDLKAAADRLEEGNLRKKIRETGLVMAAYEA-LVSQSY 171

Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
             P+     L +   E         +++    G       ++S V       ++   +D 
Sbjct: 172 IDPLDDLTRL-KNVLEVTPFFKGYTVMVDAFAGFTAQELEVLSLVLRQAKETVISVCVDQ 230

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                          N     +         + K +  L    +D          +    
Sbjct: 231 D----------PAKDNGMGLFSP--------VKKTVRQLRRITKDYHIPLAPPIRLPHGK 272

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
              ++     +    R   +   ++P        + L  A +  EEA  +A  ++  + E
Sbjct: 273 RFQNEELKLLEQVIYRQERLESGEVP------GHIVLYNASDIYEEADFVARRIQKLVQE 326

Query: 385 NK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                ++  +I  +    R V    L  +GI   +    PL      +++ S L  +   
Sbjct: 327 EGYRYREITVIARETESYRGVLDAALESYGIPYFMDQPEPLEEKPLMTLVLSALECVQSG 386

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
                +  L+K  L +    E         L  ++ R     + +               
Sbjct: 387 YRSDELFRLLKTGLTELQTEEIAALENYALLWNLSGRRWLEPFTMH-------------- 432

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                    +   ++  E    L + +++ +        +         +    +     
Sbjct: 433 -PRGFSPEMTEEDQKKLEGLNRLRETVMEPLAQFEESLRSGTGKGIAYGVYQLLERLNAA 491

Query: 561 LQNVCLDEH-----RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                + +                    L  +  ++         +   W ++   ++  
Sbjct: 492 QNIRRMADELENMGEWNLAQEQIRLWDMLMEILDQMALVLKEQHLSPRRWSELFQLVVQS 551

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS---DL 672
           E +    +    + + G   SR      + L G  EG +P+        S   +     +
Sbjct: 552 EEIAFIPQGVDEVSVGGADRSRPAAPRAVFLIGAEEGEFPRTPVSAGVFSDAERRLMISM 611

Query: 673 NLKTAEKYIGQA---AHDFEMANGTR--HLIYTRSLRENNIPTI-ASRWLQRLLVLGGT- 725
            L   +     A    +   MA  +    L  + +  + +      S  ++ +  +    
Sbjct: 612 GLPLYDSLEKLAVEERYLAYMAAVSPSERLFVSYASSDLSGGARSPSSLVREVRKIFPEC 671

Query: 726 -------DFFDNLKKRGQCYLDWTRKL----------------------DYTTKQPHYKR 756
                  + F +L    +   +    L                      D          
Sbjct: 672 PVADRSQEAFSDLLWSPEPAFELAASLWREPSEREETLKRYFGGLPEYQDRLEAVGRAAS 731

Query: 757 PKPFPPLEAQPR--------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
            +P      +            S S+I++     +  + R  L            D  + 
Sbjct: 732 EEPIAFQNPENAQKLFGSNLRVSASQIEKYYLCRFQYFCRYGLGAKERKP--AVFDALEY 789

Query: 809 GTLFHNIITELIKKRINKNTP-----EINHLMKQIIDSHFEK-----ENLPPHIDIIWRH 858
           G++ H ++  +++    +        E+   +++++DS+ E      E   P    +   
Sbjct: 790 GSVMHYLLENMLRAFSGETLASMKKQELLAEIRRLLDSYVETNLGGWEEKSPRFRYL-LA 848

Query: 859 LFHKISHSFLEHEEK--IQSSIEKIFVNIPAK---------MAIESIG-IHLTGFADRID 906
                +   L H  K   QS        +            + I   G I + G  DR+D
Sbjct: 849 RLADTAQMLLSHLGKELAQSDFVPADFELSIGKGKELEPLVLEIPGGGQISVEGKIDRVD 908

Query: 907 LLK---SGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
           +++     ++ + DYKTG    K       ++ Q+ L    +     S+      A + Y
Sbjct: 909 VMEKPSGKYIRVVDYKTGSKDFKLSDVLYGLNMQMLLYLDTVWKNGKSRYGSVLPAGILY 968

Query: 963 IRLKQKFKIDCITNDKKKYSAD 984
           +   +        +  +K   +
Sbjct: 969 VPAARPSVSAQWGDSGEKLEKE 990


>gi|296138859|ref|YP_003646102.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
 gi|296026993|gb|ADG77763.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
          Length = 1094

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 136/1059 (12%), Positives = 276/1059 (26%), Gaps = 154/1059 (14%)

Query: 46   SVTIYVPTKRAIQELRSEFIEI-------TGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98
            SV I   +KR+   LR E            G  ++  P+++++  +           +  
Sbjct: 87   SVLILTGSKRSAVALRRELSARVLADRGRAGVHASGEPLVRTVHSLAFAVLRLQAAHAGA 146

Query: 99   LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
              P      RL+  +    + R  L   + D     P             A  L D+   
Sbjct: 147  PPP------RLITGSEQDAVVRELLRGHVDDGGAFWPER-LRPALVTGGFAGALRDLFAQ 199

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER----LVELNASSPVGYQIAL 214
                    E++  L        W  AA  L+   +    R    L    A +P      L
Sbjct: 200  AAQRGAGPEEIDELAARYDRPEWAAAAAALREYQQTTLLRGSVGLAGPTAVAPAVDAAEL 259

Query: 215  MRAEAEHL---------MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
            + A    L          +     +++  +    P  + L+  +       ++    D  
Sbjct: 260  IDAAVTALAGDDALLAQQRERIRFLLVDDAQNLDPLASALIRLLGTGTELTVI--AGDPD 317

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                 +   +                      + L  LD+  E    L         RS 
Sbjct: 318  QAINSFRGAST---------------------RFLQSLDVPAERDIVL--------ERSF 348

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--- 382
               +                   +   +      A+       +EA +IA  LR      
Sbjct: 349  RFGEEITATVNRVSSRLPNRFGSVAPERPRPGSAAVRLFSTAAKEADAIAAMLRREHVLG 408

Query: 383  -DENKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKL 440
                +  + ++ +       ++  L   G+ + ++A   PL+       L S + A  + 
Sbjct: 409  GVPWEDMAIVVRSVSASVAPLRRALAYAGVPVTVAADDVPLARQRAVHALLSTVRAACEP 468

Query: 441  --NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
               D      L+  P+           R        +                  + +  
Sbjct: 469  ESLDPAEAVALLSGPVGGGDPLTLRRVRRAVRRADPSDERG------------SAEILGA 516

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                +           E +   V  V   +          T +       S++  +    
Sbjct: 517  VVAGSVDFAPYRAALTELEAEPVERVLAAVHAARAAAVEGTVEEVLWAAWSVTGLSGRWG 576

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                       +   +L         ++ F+  + T S   A  IE+I+ +         
Sbjct: 577  ALALRGGSVGEQADRDLDAVMGLFDAAADFTDTLPTAS--PARFIEYIEQLHIPRASGGG 634

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD------- 671
            + +   +  + ++    +    +D + + G+ EG WP    +   L      D       
Sbjct: 635  RRETPTTPGVTVVSAHGAAGREWDVVAVAGVQEGRWPNLRRRGGLLGTEELLDALDGIDP 694

Query: 672  LNLKTAEKYI----GQAAHDFEMANGTRHLIYTRS--LRENNIPTIASRWLQRLLVLGGT 725
              L T  + +     +        +  R  +   +    + +   + SR+LQ +   G  
Sbjct: 695  AALPTVSRSLPLLAEERRLLLVACSRARRTLLITAVDTADGDGDLVPSRFLQGIAPSGEE 754

Query: 726  DFF------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK--------------------- 758
            D        ++              L      P  +  +                     
Sbjct: 755  DPETYTPAVESEPAASLDLRTLVATLRAAACDPRREESERAHAARQLARLAADRVPGAHP 814

Query: 759  -------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                         P    +  P   S S ++ L          R            D  +
Sbjct: 815  DSWYGLAGASTDDPLWQPDDGPVALSPSNVEALSACALRWMLERFGG------SDGDSAK 868

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
               G L H     L++    +   +      + +    + E        + R    ++  
Sbjct: 869  QATGNLVH----TLVQAVAGRIPKDEVTRSLEKVWDRVDLEADWFARRELIRT--EEMLE 922

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIES----IGIHLTGFADRIDLLKSGFVDITDYKTG 921
            SF       +S + +  V +P    IE       + + G  DR++    G   + D KTG
Sbjct: 923  SFRAWLAGSRSELTEAGVEVPIDTVIEGTDGAPDVQIRGRVDRLERDPLGRTVVVDVKTG 982

Query: 922  DN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               P +   Q     QL     A+  G    +             K   K      ++  
Sbjct: 983  RTLPSQADGQAHA--QLRTYQVAIAHGGLGGVPETPGGGKLLYVAKPHNKTGATVREQDA 1040

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
             +  +  ++ L  + E     +  E  F + L  S +  
Sbjct: 1041 LTPAD-VDEWLGVIREAARRTRGPE--FAATLNASCQHC 1076


>gi|227832527|ref|YP_002834234.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
            ATCC 700975]
 gi|262183605|ref|ZP_06043026.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
            ATCC 700975]
 gi|227453543|gb|ACP32296.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
            ATCC 700975]
          Length = 1070

 Score =  198 bits (502), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 129/1026 (12%), Positives = 269/1026 (26%), Gaps = 123/1026 (11%)

Query: 46   SVTIYVPTKRAIQELRSEF------IEITGKKSTILPIIKSLGDVV-----EEKFTADLL 94
             V     T++A Q+L          +  +G  +   P  +++ ++       + +  DL+
Sbjct: 70   QVLGLTFTRKAAQQLEQRIRRQLLTLRSSGILAPGSPAAEAVENIAPNVSTYDSYAGDLV 129

Query: 95   LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK---- 150
              Y L  PV    R++  A    I    + +    L  +S ++     A  + LA+    
Sbjct: 130  REYGLLMPVEPNARIITEAERYAIAHEVVSNYTGSLSTDSAVATV--TATLLKLAETMDG 187

Query: 151  NLADIIDIIETEEKKWEDLHALKNE---------KYGMWW--LLAADFLKIASKYWTERL 199
             L D  D+ E E+   +    L+               +              +   +  
Sbjct: 188  ELKDPQDLYEHEDIFRKTAEDLEKSKRTKGEFGKDLQKYLDTQRLRLEYLPLVEALKKEQ 247

Query: 200  VELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTV-ANHP 253
             E    +                            I++     +  A   L+ ++     
Sbjct: 248  SERGVITFGEQMSIAATLAKNFPLLGEQQSARYRVIMLDEYQDTSHAQRILLRSLFGGER 307

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
             G  V    D       W   T ++     ++            +L              
Sbjct: 308  EGLSVTAVGDPMQSIYGWRGATAENLEAFVTDFPQPDGTPAPKDQLTTSWR--------- 358

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
                       + ++        S       ++   P        V L    +E EE   
Sbjct: 359  ------NPSTVLSLANDVASKLFSLSPGERPVDELSPKPTAPAGKVELGYFASEDEERAF 412

Query: 374  IAIALRMSLDENKK----KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
            IA  LR   +   +     +A++      +  +   L   G+  +I     L        
Sbjct: 413  IAEHLRRLYESTPEGEDFSAAVLVRTNRQSPLIAAALDEVGVPNEIFGLGGLLWQPEIQD 472

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
            L ++   + +  D  A   ++  P+   G  +     ++      A  G         L 
Sbjct: 473  LVAVATLLVRPQDTAAALRVLTGPMCGLGIADIQALHSRQRNLAGATEGRTRWNGGDPLD 532

Query: 490  SLVLDRI---ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
             L        A   +             E    +   ++ + +  + L   +T       
Sbjct: 533  HLATQVEEITAEGPDQVLGLADALADLGERDRYSAEGLERMEEVSSKLRYLRTYSLGKTL 592

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
            N  ++D   L     + +   +  +            L +    +        A  ++++
Sbjct: 593  NDIVADIELLFGLRTEVLASGKPGR---------ATHLDAFADFVAGFHGDGLAGLLDYL 643

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK------ 660
            ++     DG  +       + + I+   +++ L ++ + +   +   +            
Sbjct: 644  ELAKEKEDGLELGEVPLVRNRVQIMTVHKAKGLEWEHVCVVHADSSSYKAQAETFLTKIE 703

Query: 661  ---------NPFLSRVMQSDLNLK-------TAEKYIGQAAHDFEMANGTRHLIYT---- 700
                     +     V +SD +           E    +AA  F +A        T    
Sbjct: 704  KAPGDEDVIDVPEDAVTRSDFDKACTAFKEQNREFQAEEAARLFYVAMTRTESTLTVTGS 763

Query: 701  -RSLRENNIPTIASRWLQRL--------------LVLGGTDFFDNLKKRGQCYLDWTRKL 745
              +  +         +LQ L                    +    L+            L
Sbjct: 764  GTNRLKGKSKKGPYSYLQLLADKHPELVGHWDIPETPVEEEEGSALQASFPSLSPQPEAL 823

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI-----LKLDFIPHFK 800
            +            P P  + +       E   LI +  A+ A  +      +L       
Sbjct: 824  NAAEAVRAAMEDLP-PLRDGEVFGLWEQEASALIEEHKALQAPVVDVELPGELTASDMVA 882

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
               D T         I         + T     L  +        E+  P       H  
Sbjct: 883  MSADPTQFARRQRRPIPFKPNSYAKRGTAFHAWLEDRFGAPALLGEDELPGSHDEPDHDL 942

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
              +  SFL  E   +      FV  P ++ I      + G  D +     G   I D+KT
Sbjct: 943  ESLKESFLASEWAQR---TPAFVEAPFEITIGDS--VVRGRMDAVFQQPDGSWLIVDWKT 997

Query: 921  GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
            G  P+          QL++ A A +      I         +  + + + ++        
Sbjct: 998  GRRPQGAALASA-QIQLAVYAEAWRR-----IHGVDTVRAAFYYVYENYLLEPDDLPAGA 1051

Query: 981  YSADEL 986
              A+ L
Sbjct: 1052 RLAELL 1057


>gi|90021649|ref|YP_527476.1| DNA helicase/exodeoxyribonuclease V subunit B [Saccharophagus
            degradans 2-40]
 gi|89951249|gb|ABD81264.1| DNA helicase/exodeoxyribonuclease V, subunit B [Saccharophagus
            degradans 2-40]
          Length = 935

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 99/729 (13%), Positives = 214/729 (29%), Gaps = 67/729 (9%)

Query: 361  LIEADNEREEAISIAIALRMSLDENKKK-SALITADRNLARRVKLEL------------- 406
            LIE  +   E  +IA     +L +N      ++  +    R                   
Sbjct: 218  LIECVDWETEIETIARWAHQTLRQNPSTQIGIVIPNLQKHRSQIECAFIRQFDNDYLLNP 277

Query: 407  --TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
              +      ++S G PL+     +    L   + K         L++             
Sbjct: 278  TSSGADKPYELSIGSPLAEEPCIADALLLTQLLHKKLTKEEALDLIRSEFWGQN---TEA 334

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                          + ++  + +L S    RI T  +            E+ K+  +   
Sbjct: 335  RLLALQGLNDWPMTSVDTIRLTELLSKAEKRIETANDL---------NKEQFKDGFIEAT 385

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
            D +      L             L    W       L+ +    +R L +  ++   +  
Sbjct: 386  DEMTTSNRILEAI-QLYRLAAHKLDFQHWNGFLKRFLKTLNWPGNRTLNSREYQAVEQFK 444

Query: 585  SSLFSKIIETG---SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
              L   +++              ++  + + +  +  + +  +   + I GTLE+  L+F
Sbjct: 445  LILDELLVDQRCFIGSNLVTFPAYVAHLRQRLSEKVFQQQTPRKP-IQISGTLEAIGLSF 503

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMAN-GTRHLI 698
            D   +       +P++   N FL   +Q        + +K +  A     + +     + 
Sbjct: 504  DKCWVANTTRSQFPESPQPNAFLPLALQKAFATPRSSPQKELDYAEQLLTIFSECANEVT 563

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
            ++ S    +     S  L  +      +           Y   +   +++        P 
Sbjct: 564  FSYSKTAEDEHQQVSPLLPPMASKKLDEEQLAKNLYFDKYNTASAYRNFSVFSDLCGLP- 622

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                  +       + +     +P   Y    L                RG + HN++  
Sbjct: 623  LKHSEASIKIRRGVNALSTYAVNPLYAYLVHRLGAKQPNPVYVGISPPQRGNILHNVLET 682

Query: 819  LIKKRIN--------KNTPEINHLMKQIIDSHFEKEN------LPPHIDIIWRHLFHKIS 864
              +   N        +N       ++ +I  +   E       LPP +  + +     + 
Sbjct: 683  FWEATKNSAALKTKLENQAAFLAELEALISDNVNAELHKHLQYLPPQLLELEKERCLSVL 742

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL------LKSGFVDITDY 918
              +L  E      I          + ++ I  ++    DR+D         +G   + DY
Sbjct: 743  VQWLTLESYRAPFI-VAATENAYAIELKPISFNV--RVDRVDSPTSASGEPTGNSILIDY 799

Query: 919  KTGDNP-KKETAQKLIDPQLSLEAAALKAGSFS-QIDCRKVANLFYIRLKQKFKIDCITN 976
            KTG  P        L++PQL +     +  + +  +   +  N  ++ + +        +
Sbjct: 800  KTGSTPLSLLQRAPLVEPQLPVYTQLKELSASAVALGQLQPNNCTFVGIGEDAIQIDGVD 859

Query: 977  DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS--EKSNIQSEYDHL---ARVA 1031
               K +  +L +   K L      L    + F     L+       +S ++HL    R  
Sbjct: 860  APSKLNKYDLPDTWEKVLDWWQQELMKSVKGFSEGNALNITTVKTYESRFEHLQPIVRKT 919

Query: 1032 EWREEYDIS 1040
            E  +  DIS
Sbjct: 920  EQEKMADIS 928


>gi|330839035|ref|YP_004413615.1| ATP-dependent nuclease subunit B [Selenomonas sputigena ATCC 35185]
 gi|329746799|gb|AEC00156.1| ATP-dependent nuclease subunit B [Selenomonas sputigena ATCC 35185]
          Length = 1144

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 112/968 (11%), Positives = 246/968 (25%), Gaps = 139/968 (14%)

Query: 45  ASVTIYVP---TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
           +++ + +P   T RA + L +            L  +                 +     
Sbjct: 32  SALVLLLPEHATYRAERRLAAMMAGAGEGFVRGL--VFGFKRFARHVLQETGGAA---AA 86

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            ++++ + L L R++      L    +              A      + L   ++ + +
Sbjct: 87  RITSVGKRLLLKRILAEEGESLQAFAR-------------AAKQRGFTQTLERAMEEMRS 133

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                + L   +              L +    + E++      +  G  +  +  +   
Sbjct: 134 YGIDGDALLQAQPALADDDLCRKLADLALIYSRYREKMA--GRYNDTGDMLDALAEKIPS 191

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                   + + G +   P   ++++ +        +    D            E +   
Sbjct: 192 SRLLEGAEVWVDGFSFFNPQERKILAALFQKAKNVHITLTFDP---------TDEAAMQR 242

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
             S           L +L   + I              +  R    S +    + +    
Sbjct: 243 EGSLFYRQAQTLQQLRRLAQEMQIPVRV--------RSLEERRRFQSDALAAIERTAFSF 294

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNL 398
             + +          + VAL+EA   R E  + A  +     E     +  A++T D   
Sbjct: 295 PLVPQ-------AGAAGVALVEAATRRLEMEAAAADIVRLCREKGLRWRDIAILTRDEAA 347

Query: 399 ARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
              +    L   GI               + ++ S    + +   + A+   +K    K 
Sbjct: 348 YGDMLALTLEDCGIPYFRDNKREGVHHPLAELVRSAFEVL-RGWRYDAMFRALKTGFFKK 406

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
              +  L         +         D    +   LD                  S   +
Sbjct: 407 TRGQIDLLENYVLEFGIRGSSWTMEEDWHWHRRRSLDEEEEGATQKEAERLCQINSC--R 464

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                 +      +    T +    +    L   D  +              R   +   
Sbjct: 465 RAVAEPLQEFAAQVKAASTVRGYAEALYRLLLALDVPQTLERWADE-AEKAGRLAESREH 523

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            +    + SL  ++ ET         E+ D++   +D   +         + +    ++ 
Sbjct: 524 RQIWDDVISLLEQMAETSGDETIKVREFEDVLGDGLDALQISLIPPGLDYVTVADFDQNS 583

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ---SDLNLKTA----EKYIGQAAHDFEM 690
           + N   + + G NEGV P+ + +   LS   +    +  L+      E    +    ++ 
Sbjct: 584 VENARAIYILGANEGVMPRRSQEKGLLSDADRLHLKEAGLELPQGSVEGSFNERFLLYKG 643

Query: 691 ANGTRH-LIYTRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKRG----------QCY 738
               R  L  + +L +      + +  L ++  +        +   G          Q  
Sbjct: 644 FTEARDYLWVSYALADTEGKALLPASLLGQIRTVLPAVSLQTVPLEGAERRLFAGGRQAV 703

Query: 739 LDWTRKLD--------------------------------------YTTKQPHYKRPKPF 760
                 L                                       +   +   K     
Sbjct: 704 TALAAALRSYREKGTLDPFWCDVYNWALGERKMSIVLQKVLQGIFSHAAAELLPKELAAA 763

Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL- 819
              + +    S +  +     P+  +AR  L L             D G L H  + E  
Sbjct: 764 LYTKNRRLRGSVTRFESFRACPFQHFARYGLHLAER--PAHGFRTLDLGVLLHAALREFG 821

Query: 820 ---------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLE 869
                     +    +   EI H +  ++    + E L              + +   L 
Sbjct: 822 ERLKKDGRRWRDVGEEECGEILHEILGLLAPRLQNEILLSSKQYENLLVRIEETAKKALV 881

Query: 870 H--EEKIQSSIEKIFVNIPAK-----------MAIESIGIHLTGFADRIDLLKSGFV-DI 915
              E    S    +                     +   + +TG  DRID+ ++G    I
Sbjct: 882 RLIELDAASEFRPVAFERSFGRGAGSLPPLTYALADGSSLEITGQIDRIDMDEAGRYFLI 941

Query: 916 TDYKTGDN 923
            DYKTG  
Sbjct: 942 LDYKTGAA 949


>gi|299822107|ref|ZP_07053993.1| ATP-dependent nuclease subunit B [Listeria grayi DSM 20601]
 gi|299815636|gb|EFI82874.1| ATP-dependent nuclease subunit B [Listeria grayi DSM 20601]
          Length = 1161

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 96/936 (10%), Positives = 247/936 (26%), Gaps = 128/936 (13%)

Query: 130  LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
            L  +  L +    A        +A +   I+  E + E    +   +           ++
Sbjct: 101  LAEQDKLKIFQRAAMKRGFYGEIASLFKEIKQSELRTEAFAEVAP-ELTTSTADKLHDIQ 159

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            +    +   L            + L+           +  +II G          ++  +
Sbjct: 160  LLFDRYENMLA--GKYMESEDYLRLLTNSISRSTYIKQATVIIDGFDSFTEQELSVIGAL 217

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                    +              ++ +++ +      +   H +  L ++ +     + +
Sbjct: 218  MEGSESVRIAL------------SLPDETASNRLDAYSLFQHGKEYLDRITEMARQTQIE 265

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            +         +    +  +K    P+  ++      E+         + + + +A+N R 
Sbjct: 266  I---------LPRLHLESNKRTNDPELRELELLFSEESAPKRYVGENTSLHIHQANNRRA 316

Query: 370  EAISIAIALRMSLD----ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            EA  IA  +R  +     + K  + L+         V        +   +     ++   
Sbjct: 317  EAEGIARKIRELVASRQFDYKDIAVLVRGVDKYETLVSRAFQGNEVPYFLDKKRTMADHP 376

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL------ELVALRGN 479
                + S L A+ +   +  I   ++            L+R +  L      E       
Sbjct: 377  FIEFIRSTLEAVQQNWRYENIFQAIRTEFFFDLETPNPLNRKQADLLENYCIENGIKAKW 436

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
            +       +   V          T             +      ++ +       V+   
Sbjct: 437  RWQKKGDWIYQKVKGLTIELAPQTDEELAMQETINTLRYRIQKPLEALETAFEDAVSGID 496

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
               +    L      +      +               E+    +  +  + +E      
Sbjct: 497  YGTALYRYLENVQAAERLEMWREQ-AEANDLLELAREHEQAWTAVMGMLDEFVEILGDDP 555

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   +++++T  +D             + +     +RLL    L + G N+GV P    
Sbjct: 556  LDFDTFLEVVTTGLDALEFSLLPPTLDQVIVSDMDVARLLRVKVLFIAGANDGVLPLRKK 615

Query: 660  KNPFLSRVMQSDL---------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
                LS   +  +          L +        A+       +  L  +    ++    
Sbjct: 616  DGGILSDDDRVAISEQGVPIRSGLTSHLIEEEHLAYRLFT-TASSQLYLSYPAADDEGKL 674

Query: 711  IASR-----------------WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
            +                    +L    +L   +  D ++ +       T +L    +   
Sbjct: 675  LTESNYLRKIKAHFEMLTEEIYLNDPSLLPIREQSDYVRAKEATLSQLTAQLQLYKRGYP 734

Query: 754  YK------------------------------------RPKPFPPLEAQPRTYSFSEIKQ 777
                                                  R +    L  +    S S +++
Sbjct: 735  VASVWWDAYNYFIRKSDWSAVVKHVLGSLFYGNRTQPIRSETAANLFGENIFASVSRMEK 794

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKN 827
              +  +  +A+  LKL+    F       D G +FH  +  +               +  
Sbjct: 795  FFSCEFQHFAQYGLKLEERAEF--KLQAVDMGEVFHGAMEWISNEIKRRQQEWGSLTDLE 852

Query: 828  TPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSF--LEHEEKIQSSIEKIFVN 884
              EI     + +    + E L         ++   +I      + +++   S+   + + 
Sbjct: 853  CQEIARDAIRYLAPKIQHEILLSTKRMAYIQYKLEQIIARATHVLNKQAKVSAFRPLGLE 912

Query: 885  IPAKMAIESIGIHLT----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQ 930
            +   +  +   + +           G  DRID+ K      + I DYK+  +  +     
Sbjct: 913  VDFGIKGQLPPMQIKLDKQRELLLQGRVDRIDVAKEEDRSFLRIIDYKSSSHDLRLTEVY 972

Query: 931  KLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRL 965
              +  Q+      +   +   I    + A + Y  +
Sbjct: 973  YGLALQMLTYLDIVVQNAQKLIGKQAEPAGVLYFHM 1008


>gi|167462208|ref|ZP_02327297.1| ATP-dependent nuclease, subunit B [Paenibacillus larvae subsp. larvae
            BRL-230010]
 gi|322383646|ref|ZP_08057397.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae
            subsp. larvae B-3650]
 gi|321151858|gb|EFX44801.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae
            subsp. larvae B-3650]
          Length = 1200

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 142/1083 (13%), Positives = 309/1083 (28%), Gaps = 157/1083 (14%)

Query: 58   QELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN--------IQRL 109
            +    E      +K    P+I  + D    +   +L+ S NL+  +            R+
Sbjct: 16   RYCLDEIRNSLKQKPEGDPLIYLVPDQATFQAELELVSSDNLSGMIRAQVLSFHRLAWRV 75

Query: 110  LE----LARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++    +ARL +     KL         E  L    S    +    +L  +    +    
Sbjct: 76   MQEEGGIARLPVDETGKKLLLHKLLHEQEKQLVYFQSTYEQLGFVDHLNRLFTEWKRYCV 135

Query: 165  KWEDLHA----LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
              E+L      L  +   +        L      +  RL            ++L+  +  
Sbjct: 136  TPEELGEYIGRLDGQNSSLVLQQKLQDLHHLYGAFESRLS--GEYLDGEDTLSLLAEQIP 193

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                       + G  G  P   R++  +     G  V   LD            E+   
Sbjct: 194  QSSFIRSATFWMDGFHGFTPQELRVVEALMKTSRGVTVTLTLDRPYY------AGERPDE 247

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
            +     T  T    SL +LLD  +I   ++  L       Y  + +++      D     
Sbjct: 248  LDLFYPTGKTM--SSLQELLDQANIGPAELIHLQPKKAPRYEHTTMLAYLEQHYDKRIGI 305

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN 397
                      + +   S + +  A N R E    A  +   + E     +  A++  +  
Sbjct: 306  GVC----TYSSDEDKESPLQIRAAVNRRAEVEGTAREILHLVREQGARWRDVAVLVRNME 361

Query: 398  LARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
              R +     + +GI         +     S  L S L  I +   + A+   VK     
Sbjct: 362  EYRELIATTFSDYGIPHFFDQKRSVFHHPLSEYLRSALEVISRNWRYEAVFRCVKTDFLL 421

Query: 457  FG-----------------FPEKYLSRAKNALELVALRGNKNSYDIMDLKSL--VLDRIA 497
                                  +   R  + LE  AL       D  + K    +     
Sbjct: 422  PWPLPVEPDSEGEKLLKEREAIREQRRLLDRLENYALAFGIQGRDWTETKPWDKLFKVSL 481

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI---SDWT 554
              +++  V   +SR  E+       + + +L     +   KT K        +   +   
Sbjct: 482  EDEDSEVVKQRESRELEQLNRTRNQIAEPLLALQKRMARAKTVKQRCEALYRLLLDTHVP 541

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            +   +   N  L E +        +   ++  +  +++E       +   +  ++   ++
Sbjct: 542  ERLESWSMNCVL-EGKPEKAREHAQLWDSVIQMLDQMVEMMGEEVLSLDLFAKLVDTGLE 600

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-- 672
               +         + +     +R       ++ G+NEGV P    ++  L+   +  L  
Sbjct: 601  SIQMGLVPPSLDQVLVGSMDRTRSTRIKYAVVLGVNEGVIPAAVPEDGVLTEPERELLLD 660

Query: 673  -NLKTAE---KYIGQAAHDFEMANG--TRHLIYTRSLRENNIPT-IASRWLQRLLVL--- 722
              +  A+   + +         A    +  LI + +L +    + + S  +++L  L   
Sbjct: 661  SGVPMADGGRRKLLDEQFIIYSALSVPSEKLILSYALADEEGKSLLPSELVKQLRNLFPD 720

Query: 723  ----------------GGTDFFDNLKKRGQCYLD---------------WTRKLDYTTKQ 751
                                 F    +R   YL                W    ++  +Q
Sbjct: 721  VKEELVLTEPGVLMDSAEHLPFLAHPERVLSYLAVQLKQWMRGTAIASIWWEVYNWFARQ 780

Query: 752  PHYKRP-------------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
            P ++R                         L  Q    S S +++    P++ +A   L+
Sbjct: 781  PEWRRRLSVMDDSLLFTNKEQKLPESTSRLLYGQKLRASVSRMERYAACPFSHFASYGLR 840

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI----------NHLMKQIIDSH 842
            L          +  D G LFH  +++   +   +               + L+   +   
Sbjct: 841  LQERK--IYRLEAPDIGQLFHAALSQFANQLRTEQVEWAGLTPEECGRRSSLVMDQLAPR 898

Query: 843  FEKENLPPHID-IIWRHLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAK---------MA 890
             + E L              ++    + +  E   +   + + + I              
Sbjct: 899  LQGEILLSSKRYHYIASKLKQVVTKAAVVLGEHAKRGEFKPLGMEIDFGPGKDLPPLVFQ 958

Query: 891  IE-SIGIHLTGFADRIDLLKSGF----VDITDYKTGDNP-KKETAQKLIDPQLSLEA-AA 943
            ++    + + G  DR+D    G     + + DYK+             +  Q+       
Sbjct: 959  LDNGCTMEIIGRIDRVDQ-AEGSEGLLLRVIDYKSSAASLNLAEVYYGLSLQMLTYLDVI 1017

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
            +             A + Y  +      + I   K + ++ +  ++ +K       L+ +
Sbjct: 1018 ITHAKTWLGIPATPAGVLYFHV-----HNPILQQKNRITSQDAQKELMKRFKMRGLLMAD 1072

Query: 1004 GEQ 1006
             + 
Sbjct: 1073 PQI 1075


>gi|303231697|ref|ZP_07318420.1| putative ATP-dependent nuclease subunit B [Veillonella atypica
            ACS-049-V-Sch6]
 gi|302513646|gb|EFL55665.1| putative ATP-dependent nuclease subunit B [Veillonella atypica
            ACS-049-V-Sch6]
          Length = 1176

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 112/978 (11%), Positives = 262/978 (26%), Gaps = 161/978 (16%)

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
            + I      +   +      + L L    A     +  L  +     +     ++L +  
Sbjct: 86   QSISQLGRTMLLSLVMKRKGNELGLLSQAAKRPEFSSVLQGLFSEFRSFRIGPDELESGA 145

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
            +             L +    + E L              L+ A  +  +      + + 
Sbjct: 146  DRVSNGVLQKKLRELALCMSAYEEELQLHGQIDGDPIMD-LVHALPQSPLME-NCHVFVD 203

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
            G     P    L+  + +    +++       +P      +                   
Sbjct: 204  GFHWFTPVHFELLYMLFDLAVESVIT----VDLPADPKRILANTGHYGI----------- 248

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                + ++ L+   ++                +  + F     + +  +           
Sbjct: 249  --FNRSVEILENLYKEYG------------KKLSFQHFTGHKGTPVLQSLEENFFHGKRN 294

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKL-ELTR 408
                 + L+ A N   EA  +A  +   ++ N     +   ++  +            TR
Sbjct: 295  TTDEHIPLVSAYNREREADWVARDILSYIESNPNARYRDICIMLRESETYGDTLEKVFTR 354

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
            +GI        P++      ++T LL  +        +  L+K  L            A 
Sbjct: 355  YGIPHFGDRQRPMNNHPLGELMTDLLGIVKHSYSRDIMFRLLKTDLTPLS------REAV 408

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
            + LE   L    +           + R+    +       +        E        I+
Sbjct: 409  DELENYVLEFGIDHLQWERDNWSYMRRVTGLSDEEQPDAPRH-------ERVNASRQAIM 461

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK------ 582
              + P   +  + ++  G    ++W K   T L+ + + +     +L  E +G       
Sbjct: 462  DILIPWFDFAASSDAHTG----AEWCKHIYTVLEALQVPQRLYEWSLEAERDGDLESKAS 517

Query: 583  ------TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                   +     +++           E I ++   +D             + I     +
Sbjct: 518  HEQMYNAVIGFLDEMMVLTDTETLTLDEMIALLEEALDNVHYSMIPPSLDHVVITTIERA 577

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---NLKTAE----KYIGQAAHDFE 689
               ++  + + GLN+GV+P+N      +    +  L    +  AE    K   +    + 
Sbjct: 578  YSQSWPRVYVMGLNQGVFPQNMGDEGLIKDREREALAEAGIVLAEGALPKAFNENFLLYL 637

Query: 690  MANGTRH-LIYTRSLRENNIPTIASRW-LQRLLVLG----------------GTDFFDNL 731
                    L  + +   +    + S   ++RL  LG                  ++    
Sbjct: 638  AMTRAEEYLTISYAGSNDEGEGLESSLVIKRLQSLGFCTSPIEVPFTIQDGTEDEYLWRP 697

Query: 732  KKRGQCYLDWTRKLDYTTKQPHY-----------KRPKPFPPLEAQ-------------- 766
             +      +    L                       +P     ++              
Sbjct: 698  YQSLSLLSERWGALFSGVPVSPLWWGLYNWARYDAAYRPRLEDVSRGIRDNNDVPVIAPE 757

Query: 767  ----------PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                        + S + +++    P+  YA+  LKL+      +     + GT  H  +
Sbjct: 758  LVNGLFLKRGYMSGSVTRLEKYRQCPFKFYAQYGLKLEPRK--VRSFGAPEIGTFLHANL 815

Query: 817  TEL-------IKKRINKNTPEINHLMKQIIDSHFEK--------ENLPPHIDIIWRHLFH 861
              L        K+  + +      L  ++     E+              I+        
Sbjct: 816  ERLGTQLLSEHKQWRDLDETAQQELCARVAADILEENRYDEDEKTAYDKAIEERVVRTLQ 875

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPA---------KMAIESIG-IHLTGFADRIDLL-KS 910
            K     ++     +SS + +++             K+++     + L G  DRID   + 
Sbjct: 876  KTVSRLVDW--SSRSSFDTMYLEQDFGRPNGWDSIKVSLGDDRYLRLVGQIDRIDEYNRD 933

Query: 911  GFVD--ITDYKTGDNPKKET-AQKLIDPQLSLEAAALKAGSFSQI--DCRKVANLFYIRL 965
            G     + DYK+G            +  QL     AL+  ++ +        A + Y  +
Sbjct: 934  GHTYGMVIDYKSGSTSVNAQEIYYGLKLQLMTYLLALE-SAYKKHHDQPMTPAAVVYTYV 992

Query: 966  KQKFKIDCITNDKKKYSA 983
            K            ++  A
Sbjct: 993  KNPRTPAGEPVSYEEAKA 1010


>gi|225010265|ref|ZP_03700737.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C]
 gi|225005744|gb|EEG43694.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C]
          Length = 910

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 135/1042 (12%), Positives = 288/1042 (27%), Gaps = 186/1042 (17%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
            +PF  E+   ++             NP   ++     P+KRA     +   +    K+  
Sbjct: 2    TPFLAEITDKIIKE-----------NP-DFSNTIWVFPSKRAGVFAANYL-KKNNSKTIF 48

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
             P   S+   +                 +        L  L   +              +
Sbjct: 49   APEFLSIEAFITRL------------AVIEPASTETSLCLLYESYLE------------T 84

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL-HALKNEKYGMWWL----------L 183
             +    S ++ I     +    + I+      + L   ++N +    W            
Sbjct: 85   GIKDKESFSSFIGWGTTILQDFNEIDRYGVTAKKLYTHIQNLQEVSHWALEEDKTEMVKA 144

Query: 184  AADF---LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
               F   L    + +T++++                  A+ L+          G      
Sbjct: 145  YLKFWEILPELYERFTKKMLAQGIGHQGLLYKKAKENIAQFLIDLPATTFYFIGFNALNT 204

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
            + + ++                                              QY L+   
Sbjct: 205  SESDII----------------------------------------------QYILS--- 215

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI-LENKIPNIQKCFSDV 359
                 ++            +                +     +   E            V
Sbjct: 216  -----EKRGSIFWDLDQYFLENPLHEAGYFMRKHLKNWPYFQESKPEGVSNRYTSTEKKV 270

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
             +        +A  I   L     E    +A++  D  L   V   +   G+  +I+ G 
Sbjct: 271  NIYGVPKSVSQAQLIGEILNEFSQEQVLNTAIVLGDEELLNPVIHAIP-NGLKANITMG- 328

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
                                    + +ATLV H                  L        
Sbjct: 329  -------------------APLSGVPMATLVAH---------------LFDLHTNNYSNG 354

Query: 480  KNSYDIMD-LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
             +   + D L    +  +        V  +     +++        D+I        T  
Sbjct: 355  WHIKQVQDVLTHPYIKLLVEGNQYNAVNTFIYHCQKQNISSLST--DYINVAFNTSHTII 412

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
            +       N+  + +       L+ +     +        E     S +F  +    +  
Sbjct: 413  SLLFKDKANVP-ATFVSRFQELLRVLNDFSEKNKQPQISSEV-NYFSEIFDGLSAQLTTF 470

Query: 599  KA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                N      I    +  + +    +    L ++G LESR L+F+T+I+  +NEG+ P 
Sbjct: 471  PFIDNLSGLKKIYLETLSKKRLSFSGDALEGLQLMGMLESRNLDFETVIISHVNEGILPG 530

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASR 714
              + N ++   ++    L + ++     A+ F       +++    +   + +     SR
Sbjct: 531  GKSTNSYIPLSLKKIFGLPSFKEKDAVYAYHFYRLLQRAKNVYLLYNTATDVLEGGEPSR 590

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            ++ +L           ++   Q  +     +     +    +      L+     +S S 
Sbjct: 591  FVHQLKT----QGIAKVQVNDQLAMPILDAVTPPLIEIKKDQSVIDQLLQKAKSGFSPSA 646

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-----P 829
            +   I +P   Y R +LKL      ++       GT+ H+ +  L    I +        
Sbjct: 647  LNTYIRNPIDFYKRYVLKLKDPEILEELIAYNTFGTIVHDSLQALYTPAIGQVLTENHFK 706

Query: 830  EINHLMKQIIDSHFEKENLP----PHIDIIWRHLFHKISHSFLEHEEK--IQSSIEKIFV 883
            E N  +  I+   FEK + P       ++I   +  +    FLE++++   +  I    +
Sbjct: 707  EFNQQLPHILTHFFEKHHSPTKSLKGKNLIAFSVLLQYLKDFLEYDQECAKKEPIYIESL 766

Query: 884  NIPAKMAIESIGIH----LTGFADRIDLLKSGFVDITDYKTGDNPKKE-----------T 928
                +M ++  G+       G  DR+D   +G   I D+KTG     +           +
Sbjct: 767  EKEYQMTLQIPGVSESVLFIGSLDRVDKR-NGVTHIIDFKTGAVKPTDLKLKDWDGLNNS 825

Query: 929  AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS--ADEL 986
             ++    QL   A              K     +   +  +     T      +  A++ 
Sbjct: 826  PERAKVLQLLSYALLYSQN--HGNTPVKTGIYSFKNTQDGYMFFEDTLKPSNKNIVAEDT 883

Query: 987  SEKSLKNLIEIVTLLQNGEQPF 1008
                 + L+ I+  L N E PF
Sbjct: 884  CNAFKEVLVGILQELFNIETPF 905


>gi|118470846|ref|YP_886307.1| helicase, UvrD/Rep family protein [Mycobacterium smegmatis str. MC2
            155]
 gi|118172133|gb|ABK73029.1| helicase, UvrD/Rep family protein [Mycobacterium smegmatis str. MC2
            155]
          Length = 1045

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 111/1005 (11%), Positives = 261/1005 (25%), Gaps = 130/1005 (12%)

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY- 131
               P+++++              + +  P      RL+  A    I R  L   ++D + 
Sbjct: 86   VREPLVRTVHSYAFAVLRLAAQRNGDPPP------RLITSAEQDGIIRELLAGDLEDGHR 139

Query: 132  -PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             P                A  L D++            L  L        WL A  F + 
Sbjct: 140  SPVGWPEQLWPALTTAGFATELRDLMARCTERGVDPIALQRLGRTAKRPEWLAAGRFAQA 199

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
              +              +    + +   A        G   + G+          +    
Sbjct: 200  YEQ--------------IMLLRSAVGMAAPQATVPALGAAELVGAALEALGADDELLDTE 245

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
             +    +++       P A        +    +          +        L       
Sbjct: 246  RNRIKLLLVDDAQHLDPQAARLVRALAAGTGLTVIAGDPDQSVFGYRGADPVLLRDDT-- 303

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                               +                       +    V +  A +   E
Sbjct: 304  ---HPAITLTQSYRCAPEIASAITGLGQRLPGVSDTRHWTGNPQREGTVTVRLAASTHAE 360

Query: 371  AISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTL 425
               IA ALR +   +     + + ++ +   +   +   LT  G+ +  +   +P+    
Sbjct: 361  GTMIADALRRAHLVDGIPWSQMAVIVRSVPRVGTALARALTAAGVPVQDNGTDVPVGRQP 420

Query: 426  HSSILTSLLNA-IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
             ++ L ++L+       D  +   L+  P+ +         R           G++   D
Sbjct: 421  AAAALLTVLDVTATGHLDADSAVALLTGPIGRVDPVTLRQLRRALR----RADGSQPPRD 476

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              DL    ++R     +  H                  L   +        +    + + 
Sbjct: 477  FGDLLVDAIEREPKGLSAEH------------ARTLRRLRAVLTAARRSDASGADPRYTL 524

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                  S   +  +   +       +   +L        ++  +            +   
Sbjct: 525  WQAWHASGLQRRWLAASERGGSVGAQADRDLDAVTTLFDVADQYVNRTAGA-----SLRG 579

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
             +D +TRL            +  + +L    +    +D +++ G+ EG+WP    +   L
Sbjct: 580  LVDHVTRLGAAVARTEPETAAEAVAVLSVHGALAGEWDFVVIAGVQEGLWPNMIPRGGVL 639

Query: 665  ------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI- 711
                        + +    ++ +       +      M      ++ T    +    ++ 
Sbjct: 640  GTQHLVDVLDGVADMTDRTVSTRAPLVAEERRLLMAAMGRARTRVMITAVDSDTGDESLL 699

Query: 712  ASRWLQRLLVLGGTDFFDNLK--KRGQCYLDWTRKLDYTTKQPH---------------- 753
             S +   +         +      R         +L      P                 
Sbjct: 700  PSPFCAEISAWATEPVAEPPLVAPRVLAPSALVGRLRAVVCAPDGAVDDDARACAAAQLA 759

Query: 754  --------------------YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                                    +P         T S S ++ L + P      R    
Sbjct: 760  RLAAAGVPGADPSQWHAMTSLTTEEPLWSEPGHVVTLSPSTLQMLTDCPLRWLLERHGGD 819

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
            D           +  G+L H +++E       K   ++ + ++++ D             
Sbjct: 820  DGRDVR------STVGSLVHALVSE-----PGKTESQLVNELEKVWDDLPYDAKWYSD-- 866

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI-----ESIGIHLTGFADRIDLL 908
                     +  +F    E  +  + ++   IP +  +      + G+ + G  DR++  
Sbjct: 867  -NELARHRAMLETFTRWREDTRRQLTEVATEIPVEGIVVEPGENTPGVRVRGRLDRLERD 925

Query: 909  KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
            ++G + + D KTG +P  +   +    QL++   A+ AG     D      L Y+    K
Sbjct: 926  EAGRLVVVDLKTGKSPVTKDDAQNHA-QLAMYQLAVAAGLLDDGDEPGGGKLVYL---GK 981

Query: 969  FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
                  T  ++     +   + L+ + E           F++ + 
Sbjct: 982  AGAAGATEREQDPLTPDKRAEWLETVGEAAAATAGPR--FVARVN 1024


>gi|318060453|ref|ZP_07979176.1| ATP-dependent DNA helicase [Streptomyces sp. SA3_actG]
          Length = 1839

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 124/1057 (11%), Positives = 251/1057 (23%), Gaps = 134/1057 (12%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             TLVE+             + +   +++A   LR       G      P   +       
Sbjct: 21   ETLVESVAARVEAGADPERLLVLTFSRKAAVSLRDRMALRIG--PASAPRATTFHSYGYA 78

Query: 88   KFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
               A      +  P   +S  ++ L +  L+     +     +            +    
Sbjct: 79   LVRAHQEAGPDGTPVRLLSGPEQDLAVRELLEG---ETALAAQGRGRVRWPGQLRACLTT 135

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
               A  +  ++            LH   +      W  AA FL         + V   A 
Sbjct: 136  RGFADEVRAVLARSRELGLDPAALHRFASRTGRPDWQAAAAFLAEYLDVLDLQGVIDYAE 195

Query: 206  SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                  +   R +    +      + +     + PA  RL+  +A    G  +L   D  
Sbjct: 196  LVHRADLLARRPDVAKDLAQAYDAVYVDEYQDTDPAQVRLLEALAG--QGRTLLAFGDPD 253

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                 +                                      V  L        G   
Sbjct: 254  QSIYAFRGADVNGILDFPDTF--------------RTTGGAPAPVAVLPTARRAARGVLD 299

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                  L    + +    +  ++     +      +    +   E   +A  LR +  E+
Sbjct: 300  ATRALTLRIPLTRLPAAAVRAHRDQLSTREGGSAEVYTCPSPGAETDHVADLLRRAHLED 359

Query: 386  KKKS---ALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441
                   A++    +    ++  LT  G+ +D +    PL        L + L    +  
Sbjct: 360  DVPWGDMAVLLRAGSRLPALRRSLTAAGVPVDTAGDELPLRLEPAVQPLLTALRVTAEAE 419

Query: 442  DFMAIATLVKHPLAKF-----------------------------------GFPEKYLSR 466
                     + P                                         P    S 
Sbjct: 420  ARGETPQAGETPPVGETPAGEGESGPAPEGDSVPEAEGEPVPEGEIQPVPLPQPSPEPSW 479

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQK---------------NNTHVPHWQSR 511
                  +  L       D  DL+ L     A ++                    P     
Sbjct: 480  IATETAVDLLASPLCGMDAADLRRLGRALRAEERAGGNPVPPPSDVLLARALAEPERLIA 539

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                  + A  L   + +  + L    T + +     + + W        +         
Sbjct: 540  HDAAYAKAARELGLLLARTRSLLAKGGTAEEALWELWNGTRWPTRLERASRRGGAAGRNA 599

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              +L         ++      E  +  +       +   + I  +T+  +  +   + ++
Sbjct: 600  DRDLDAVCALFATAA----RAEERTGGRGALNFLAETEAQEIAADTLSGRTVRPDAVRLM 655

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA-----H 686
                ++ L +  +++ G+ EGVWP    +   L         L          A      
Sbjct: 656  TAHRAKGLQWRLVVVAGVQEGVWPDLRQRGSLLEADRIGSDGLAEPLTPGALLAEERRLF 715

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                      L+ T            SR+L  L V           +R         +L 
Sbjct: 716  YVAATRAADRLVVTAVKAPAEDGDQPSRFLTELGV--EPRHLTVRPRRPLAVPALVAELR 773

Query: 747  YTTKQPHYKRPK-----------------------PFPPLEAQPRTYSFSEIKQLINDPY 783
             TT  PH                            P             +  +  + DP 
Sbjct: 774  ATTVDPHASPALREAAARRLARLAALTDGDGRPLVPTAHPGTWWGLADETVNEVPVRDPA 833

Query: 784  AVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
               A     L                +            G + H ++ + +    +    
Sbjct: 834  QPLALSASALGQLVDVCALQWFLGREVRAEAPASTAQGFGNVVH-VLADEVATGRSPADL 892

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
            ++       +      +                    FL      ++    +    P  +
Sbjct: 893  DVLMERLDTVWDGLAFDAPWKSAQEKENAR--AALERFLRWHVLDRTGRTPVASEHPFDV 950

Query: 890  AIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKA 946
             + +    I + G  DR+D   +G   + D+KTG   P  +       PQL++   A+  
Sbjct: 951  TLPAGDHEIRIRGTMDRVDADAAGRAYVVDFKTGKNAPTADEVDHH--PQLAVYQRAVAE 1008

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
            G+   +     A L ++RL+   K       +     
Sbjct: 1009 GAVGPLTPGG-AELVHLRLEASKKDPLSPKVQPPGPP 1044


>gi|218134062|ref|ZP_03462866.1| hypothetical protein BACPEC_01952 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991437|gb|EEC57443.1| hypothetical protein BACPEC_01952 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1091

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 122/998 (12%), Positives = 280/998 (28%), Gaps = 119/998 (11%)

Query: 48  TIYVPTKR-AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
            + VP +       + + +++    S I   I S   +    F    L    +   + + 
Sbjct: 35  LVIVPEQYTMAT--QKKLVQLHPGHSIIRTDILSFQRLASRVFAELGLEGQTI---LDDT 89

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
            + L + +++   R +L     +L                     +  +I  +       
Sbjct: 90  GKNLIIRKVMENHRKELRAFAGNLDKT-------------GFVSEVKSVISELLQYAIAP 136

Query: 167 EDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
           +D+  +                +++  + + E       +S     ++L+          
Sbjct: 137 DDMPQIITAVAGNGALADKLTDIEVVYRAFMEYTERDYITSES--LLSLLAQHVHESELI 194

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
               I I G TG  P    L++ +        V   +D                  ++ +
Sbjct: 195 KGSVIAIDGFTGFTPVQYGLLARLLETAAEVYVTVTID------------------SNEH 236

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                 P+   A  +    I         +            +  F           ++ 
Sbjct: 237 INVQDGPESLFA--MSKETISSLLRIADESHVEVAPYTLCEHTYRFDRAPELAFLEQNMF 294

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRV 402
                  +    ++ +      +EE   IA  +     E     +  A+++AD      +
Sbjct: 295 RYNGRVYRDEPENIEIYCGITPKEELQFIAAEILRLTREQGIRYRDIAVVSADIETYGML 354

Query: 403 KL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                 +  I   +     +        + S +  I     + ++   ++  +      E
Sbjct: 355 AANIFEQNDIPAFVDYKRNIMNNPMIEFMRSGIAVIESGYSYESMFRFLRSGITAITPNE 414

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
             L         +  RG K  Y   D   +  +R        +   +++    E  + A 
Sbjct: 415 TDLLENYCLALGI--RGRKRWYSQWDRNYIKKNREKADLTQLNELRYRTVKILEPLDRAY 472

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                    +  L        +    ++ SD           + L+E   L + +  +  
Sbjct: 473 TAASGTTVSVGEL------LEALYEFVAASDIEHKMNELADRLELNEENALASQY-RQIY 525

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
             + SLF +I       K    E+  ++   ++   V      +  + I     +RL N 
Sbjct: 526 PKVMSLFDEIYSLLGEEKIKRKEFARLLDSGLEEIKVGLIPPTADCVLIGDMQRTRLDNI 585

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTR 695
             L   G+N+G+ PK +     LS + +  L          A K          M     
Sbjct: 586 KVLFFAGVNDGIVPKKSENKGILSELDRYILENASVTLSPDARKKAFIERFYLYMNLTKP 645

Query: 696 --HLIYTRSLRE-NNIPTIASRWLQ-----------RLLVLGGTDFFDNLKKRGQCYLDW 741
              L  T + R  +      S +++           R       D +  + K  + +   
Sbjct: 646 SWKLYLTYAARGIDARERRPSYFVRTMYKLYPKLSMRTCDDMNNDMWLTIPKADKEWNIK 705

Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
             +++                        S + ++Q  +  +A + R  L LD       
Sbjct: 706 DSQINLVQAAADAL--------YGTDVRESVTRLEQFASCEFAHFLRYGLGLDERD--VY 755

Query: 802 DPDRTDRGTLFHNIITELIKK-------RINKNTPEINHLMKQIIDSHFEKENL----PP 850
               +D G++ H  +  +  +         +    + + ++ +++D+   +         
Sbjct: 756 TISASDTGSILHKSMECISSEVIRSGMSFADMKDEQRHEIVGRVVDTVAAEYGNAVFKDS 815

Query: 851 HIDIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIES----IGIHLTGFAD 903
             +        +++   +      Q            +   + +        + L G  D
Sbjct: 816 SRNEYMIEKVKELTQRTV-WAIGRQLEQEQFVPESFEVRFSLPMNESVSKRKVELVGSID 874

Query: 904 RIDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--- 956
           RID+ + G    + I DYKTG+           +  QL             ++   K   
Sbjct: 875 RIDVCEDGDNIYIKIIDYKTGNEKFSLYKTYYGLRIQLMTY-MIAAMEHEKKLHPGKNIV 933

Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            A  FY        +       ++ S +++ +K L  L
Sbjct: 934 PAGAFYY-------VVDDPIVDRQDSREKVEKKILAQL 964


>gi|225570786|ref|ZP_03779809.1| hypothetical protein CLOHYLEM_06889 [Clostridium hylemonae DSM 15053]
 gi|225160248|gb|EEG72867.1| hypothetical protein CLOHYLEM_06889 [Clostridium hylemonae DSM 15053]
          Length = 1116

 Score =  197 bits (500), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 115/1004 (11%), Positives = 265/1004 (26%), Gaps = 148/1004 (14%)

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + S G +    F      +    P + +  + L L R+   + +KL  +  ++     +S
Sbjct: 64   VLSFGRLAYRVFEETGGGAL---PVLDDEGKNLILRRIAGSYEDKLKVLKGNMKKLGYIS 120

Query: 138  LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKYWT 196
                          +  +I      +   E+L  +                + +  K ++
Sbjct: 121  -------------EVKSVISEFTQYDIGEEELERVMETAGPDSRLYYKLKDILLLYKGFS 167

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            E L E   +      + ++   A          +++ G TG  P   RL+  +       
Sbjct: 168  EYLEEKYIT--KEELLDVLSRMAGQSELLKDSTVVLDGFTGFTPVQNRLLLELMRCCRDV 225

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            IV   +D      ++                  THP    A     +       +     
Sbjct: 226  IVTVTMDDREDPYVY------------------THPYQLFAISRQMVTSLIRIARESSIE 267

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
              E           F   D        +              V++  A N  EEA+++A 
Sbjct: 268  VKEPVCLYSRPLPRFRGNDALAFLERSLFRYGQSVYGGEQEAVSVHAARNPEEEALAVAG 327

Query: 377  ALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTS 432
             +R  +       ++  +I +D N            +GI + +     +        + S
Sbjct: 328  RVRNLVRTKGYRYREIGVIASDMNTYGDYLEQAFDMYGIPVFMDHKRSILLNSFVEYIRS 387

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            LL+ + +   + ++   ++  LA F   E                       I   +   
Sbjct: 388  LLHMVQQRFSYESVFRFLRTDLAGFTGEEVDELENYVL-----------GLGIKGYRKWQ 436

Query: 493  LDRIATQ-KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
               +              +       E        + Q    +               + 
Sbjct: 437  EKWVRRLKGMKEEDLGRLNHYRTVFVEKVDGFNYVLRQRKKTVRDITMAVYDFMVQEELQ 496

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
               K      Q              + +  + +  LF K +        +  E+I ++  
Sbjct: 497  VKLKRQEEAFQRSGELA----LAREYAQVYRIVLELFDKFVALLGDEPVSLDEYIKLLDA 552

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
             ++   V         +       +RL +   L   G N+   P    +   LS   +  
Sbjct: 553  GLEEARVGVIPPSPDQVVAGDVERTRLKDIKALFFVGANDSFLPGALGQGGLLSEHDRQQ 612

Query: 672  LN------LKTAEKYIGQAAHDFEMANGTR----HLIYTRSLRENNIPTIASRWLQRLLV 721
             +         +++          M          + Y+  +  +   +  S  +Q L  
Sbjct: 613  FSKEKLALSPGSKEKAYIQKFYLYMNLTKPSDLLEVYYS-KVSSDGRSSRPSYLIQELRR 671

Query: 722  LGGTDFFDNLKKRGQCY---------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
            L      ++ +++                   L           +  +   +  P  + +
Sbjct: 672  LFPHLSVEDEEEKELHLQEMTKETAVSRLIDGLGSADIQADAGWKELFSWYRRSPEFKDR 731

Query: 767  PRTY----------------------------SFSEIKQLINDPYAVYARRILKLDFIPH 798
                                            S + +++     +A +    L L     
Sbjct: 732  LERLIEAGYYTYTMDGLTRSAAKRLYGDTFEDSITRMERYSTCAFAHFLTYGLGLTERQ- 790

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDSHFEKEN-------- 847
             + +    D G + H+ + +  K+        T   +   ++ ++   E+          
Sbjct: 791  -EYEFQAVDLGNVCHSALEKYSKRVEEAGRDWTDISDGQQREWVEQSVEEAVTDYGNSVL 849

Query: 848  LPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
                 +        ++     +   E+      +     +              G  DR+
Sbjct: 850  YSSARNEYMIGRMKRMLSRTIWALTEQLSAGDFKPAGYELRFA----------NGKIDRV 899

Query: 906  DLLKSGF---VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--AN 959
            D  + G    V + DYKTG       +  + +  QL +   A       +   ++V  A 
Sbjct: 900  DTCEDGGKIYVKVLDYKTGMKAFDIVSLYEGLQLQLMVYMDAAVKLEQRRNPGKEVVPAG 959

Query: 960  LFYIRL------KQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
            +FY R+      K + + +      K+   D +  +  + L  +
Sbjct: 960  VFYYRIQDPLVEKSEGEEERREAVLKELKPDGIMSQEEEVLSHL 1003


>gi|295401124|ref|ZP_06811098.1| ATP-dependent nuclease subunit B [Geobacillus thermoglucosidasius
            C56-YS93]
 gi|294976917|gb|EFG52521.1| ATP-dependent nuclease subunit B [Geobacillus thermoglucosidasius
            C56-YS93]
          Length = 1172

 Score =  197 bits (500), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 122/966 (12%), Positives = 243/966 (25%), Gaps = 142/966 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA---LKNEKYGMWWLLAADF----L 188
            L L     +     + L D+I   +      + L        E+               +
Sbjct: 110  LKLFGRAVDKAGFIQQLHDMITECKRYCVAPQHLREHVKFLEEQGKRPAEKVLADKLNDI 169

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
             I  +     L+           + L+  +  H        I I G     P    ++  
Sbjct: 170  SIVYEELERSLLNHYIH--SEDYLRLLAEKIPHSRYLRNAEIYIDGFHQFTPQEYMVLEQ 227

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +  H     V   +D                           H  Y  AK    +     
Sbjct: 228  LLIHCKRVTVSLTVDAPYDD----------------WLPNELHLFYLTAKTYHDIRQMAL 271

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                    +  +         +    +                  +    + + EA N R
Sbjct: 272  ANGIALEDAIILEKNMRHQEGALAHLEAH------YHARPAVAFSEKTDSIIVYEAANRR 325

Query: 369  EEAISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTT 424
             E  +IA  +   + +     +  ALI  +    R  VK   + F I   +     +   
Sbjct: 326  AEVEAIAREIVRLVRDEGYRYRDIALIVRNTEDYRDLVKTIFSDFHIPYFMDEKESMHHH 385

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNSY 483
                +L + +  I     + ++   +K  L    G     L  A + LE   L       
Sbjct: 386  PLIELLRASMEIITSRWRYESVFRAIKTDLLFPVGEDTATLREAMDRLENYVLAYGIKGE 445

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
               + +        T +    +       ++E+K+    L         PL   +     
Sbjct: 446  KWTNGERW------TYRRYQALEGLSVPQTDEEKQYEEKLNQWRDMIAAPLSKLERRMRR 499

Query: 544  TCGNLSISDWTKLTVTCLQ---------NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                 S+ +   L +  LQ             ++ R +     E+    +  LF++ ++ 
Sbjct: 500  AKDGRSLCEAIYLFLEELQIPRKLEKMSKEAEEQGRLMEARQHEQVWNAVIDLFNQYVDM 559

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                     E+  II   +D             + I     SRL++     + G+NEGV 
Sbjct: 560  LGSEPVPLAEFAKIIETGLDRLEFSLVPPAIDQVIIAQLDRSRLIDVKCAFIVGVNEGVI 619

Query: 655  PKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRS-LRE 705
            P    ++  L+   +  L            + +        +A    +  L  T     E
Sbjct: 620  PAKAKEDGLLAETEREILQQFGTRVAPGGREQLFYEPFFIYLALTCPSERLYVTYPLANE 679

Query: 706  NNIPTIAS------------------------------------------RWLQRLLVLG 723
                   S                                            + +L    
Sbjct: 680  EGKALSPSLIIKQLADLFPNLQKHVCGNDPLDAEHAEQQAFITVPRATLTYLVAQLQAWK 739

Query: 724  GTDFFDNLK-------KRGQCYLDWTRKLDYTTKQPHYKRP---KPFPPLEAQPRTYSFS 773
                   L             +    RK        +   P   +    L  +    S S
Sbjct: 740  RHYSIAPLWWDVYNFYASDPQWRKQARKAIAGLFYTNAATPLKKEISKRLYGKKIQASVS 799

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI-- 831
             ++Q    P++ +    L+L     F+   D  D G LFH  +  +  +           
Sbjct: 800  RMEQFQKCPFSHFVSHGLRLKERDVFR--LDAPDIGQLFHYALKIISDRLREAKIDWRYL 857

Query: 832  ---------NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEHEEKIQSSIEK 880
                        ++QI     ++  L  +     +     +      +  E    S    
Sbjct: 858  SKQQCEQLSAEAVEQIAPLIQQQVLLSSNRYHYMKRKLQNVVARTTNVLSEHAKASGFVP 917

Query: 881  IFVNIPA---------KMAIESIGI-HLTGFADRIDLLKSGF---VDITDYKTG-DNPKK 926
            I + +              +    +  L G  DR+D  +S     + + DYK+       
Sbjct: 918  IGLELEFGPNGALPPLTFRLPDGTVMELVGRIDRVDKAESSRGVLLRVIDYKSSAKTLNL 977

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYSADE 985
                  +  Q+      +   +   +      A + Y  +             +K +  +
Sbjct: 978  AEVYYGLALQILTYLDIVLTYAEQLVGKEAFPAGILYFHVHNPIIKSDQLLHDEKEAERK 1037

Query: 986  LSEKSL 991
            L E+  
Sbjct: 1038 LLEQFK 1043


>gi|312112100|ref|YP_003990416.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y4.1MC1]
 gi|311217201|gb|ADP75805.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y4.1MC1]
          Length = 1172

 Score =  197 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 121/966 (12%), Positives = 243/966 (25%), Gaps = 142/966 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA---LKNEKYGMWWLLAADF----L 188
            L L     +     + L D+I   +      + L        E+               +
Sbjct: 110  LKLFGRAVDKAGFIQQLHDMITECKRYCVAPQHLREHVKFLEEQGKRPAEKVLADKLNDI 169

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
             I  +     L+           + L+  +  H        I I G     P    ++  
Sbjct: 170  SIVYEELERSLLNHYIH--SEDYLRLLAEKIPHSRYLRNAEIYIDGFHQFTPQEYMVLEQ 227

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +  H     V   +D                           H  Y  AK    +     
Sbjct: 228  LLIHCKRVTVSLTVDAPYDD----------------WLPNELHLFYLTAKTYHDIRQMAL 271

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                    +  +         +    +                  +    + + EA N R
Sbjct: 272  ANGIALEDAIILEKNMRHQEGALAHLEAH------YHARPAVAFPEKTDSIIVYEAANRR 325

Query: 369  EEAISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTT 424
             E  +IA  +   + +     +  ALI  +    R  VK   + F I   +     +   
Sbjct: 326  AEVEAIAREIVRLVRDEGYRYRDIALIVRNTEDYRDLVKTIFSDFHIPYFMDEKESMHHH 385

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR-AKNALELVALRGNKNSY 483
                +L + +  I     + ++   +K  L      +    R A + LE   L       
Sbjct: 386  PLIELLRASMEIITSRWRYESVFRAIKTDLLFPVEEDTAALREAMDRLENYVLAYGIKGE 445

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
               + +        T +    +       ++E+K+    L         PL   +     
Sbjct: 446  KWTNGERW------TYRRYQALEGLSVPQTDEEKQYEEKLNQWRDMIAAPLSKLERRMRR 499

Query: 544  TCGNLSISDWTKLTVTCLQ---------NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                 S+ +   L +  LQ             ++ R +     E+    +  LF++ ++ 
Sbjct: 500  AKDGRSLCEAIYLFLEELQIPRKLEKMSKEAEEQGRLMEARQHEQVWNAVIDLFNQYVDM 559

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                     E+  II   +D             + I     SRL++     + G+NEGV 
Sbjct: 560  LGSEPIPLAEFAKIIETGLDRLEFSLVPPAIDQVIIAQLDRSRLIDVKCAFIVGVNEGVI 619

Query: 655  PKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRS-LRE 705
            P    ++  L+   +  L            + +        +A    +  L  T     E
Sbjct: 620  PAKAKEDGLLAETEREILQQFGTRVAPGGREQLFYEPFFIYLALTCPSERLYVTYPLANE 679

Query: 706  NNIPTIAS------------------------------------------RWLQRLLVLG 723
                   S                                            + +L    
Sbjct: 680  EGKALSPSLIIKQLADLFPNLQKHVCGNDPLDAEHAEQQAFITVPRATLTYLVAQLQAWK 739

Query: 724  GTDFFDNLK-------KRGQCYLDWTRKLDYTTKQPHYKRP---KPFPPLEAQPRTYSFS 773
                   L             +    RK        +   P   +    L  +    S S
Sbjct: 740  RHYSIAPLWWDVYNFYASDPQWRKQARKAIAGLFYTNAATPLKKEISKRLYGKKIQASVS 799

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI-- 831
             ++Q    P++ +    L+L     F+   D  D G LFH  +  +  +           
Sbjct: 800  RMEQFQKCPFSHFVSHGLRLKERDVFR--LDAPDIGQLFHYALKIISDRLREAKIDWRYL 857

Query: 832  ---------NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEHEEKIQSSIEK 880
                        ++QI     ++  L  +     +     +      +  E    S    
Sbjct: 858  SKQQCEQLSAEAVEQIAPLIQQQVLLSSNRYHYMKRKLQNVVARTTNVLSEHAKASGFVP 917

Query: 881  IFVNIPA---------KMAIESIGI-HLTGFADRIDLLKSGF---VDITDYKTG-DNPKK 926
            I + +              +    +  L G  DR+D  +S     + + DYK+       
Sbjct: 918  IGLELEFGPNGALPPLTFRLPDGTVMELVGRIDRVDKAESSRGVLLRVIDYKSSAKTLNL 977

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYSADE 985
                  +  Q+      +   +   +      A + Y  +             +K +  +
Sbjct: 978  AEVYYGLALQILTYLDIVLTYAEQLVGKEAFPAGILYFHVHNPIIKSDQLLHDEKEAERK 1037

Query: 986  LSEKSL 991
            L E+  
Sbjct: 1038 LLEQFK 1043


>gi|73541803|ref|YP_296323.1| DNA helicase/exodeoxyribonuclease V, subunit B [Ralstonia eutropha
            JMP134]
 gi|72119216|gb|AAZ61479.1| DNA helicase/exodeoxyribonuclease V, subunit B [Ralstonia eutropha
            JMP134]
          Length = 957

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 166/1046 (15%), Positives = 319/1046 (30%), Gaps = 123/1046 (11%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKR--AIQELRSEFIEITGK 70
            P   F  +   A         F  D       A   + VPT        +  +       
Sbjct: 8    PGPDFLDQAAAA-------AWFFLDRCGVSE-AGAHVIVPTAAQIPGVRMALDAAARAAG 59

Query: 71   KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
            +  +LP + +LG  + +       L     P  S+  RLL + + +              
Sbjct: 60   QPRLLPRVLTLGHWLLD-------LPPEGAPVRSHAARLLAVQQAVRA-----------Q 101

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                      + + A  LA+ L  I D + T   +   +   +         L    L+ 
Sbjct: 102  DWLRRSFGAQTESAAWGLAQTLLSICDELNTRWLEDVAVSDGEAMDGTDRAALLQGALER 161

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
               + +ER++   +           R         +       G    +P+  R +  +A
Sbjct: 162  TYAHLSERMLGEES-----------RIVLAFWQALS-------GPDDPLPSRRRALRRLA 203

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
               +G +V        P                +    +      L    D+        
Sbjct: 204  QQLSGPVVWIAPTPPTPIEG-------------AFLRDADELVPVLEIGYDWSGAAEAQE 250

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                +    ++  + +   +  P  T            +P + +    + +I      +E
Sbjct: 251  PGWYDTLISLWPEARISDAADAPAFT----------PALPTLPEGRPAIRVIGTARFEDE 300

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A + A  L   L+  ++  AL+  DR +ARRV+  L R G  +    G  LSTT  ++ L
Sbjct: 301  AAAAADQLVQWLNAGRRNIALVAHDRVVARRVRALLARAGAPVRDETGWKLSTTRAAAAL 360

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
                + + +  D  A+  L+K P     FP+     A  AL    +R +  S     L+ 
Sbjct: 361  MRWFDLLVRDGDTAALLDLLKSPFCLPDFPD---RGAAIALIERQVRRDNVSGGWDRLRH 417

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            L                  +   + + + A  +     + +T L               +
Sbjct: 418  L--------PRALPAALADADADDTEIKRAEAVRRSAGELLTILADEAARWPRGLAQHPL 469

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
            S W       L  + +           +              ET S    +  E+  +++
Sbjct: 470  SMWLGCLDGTLDALGMRAALAADEAGRQLLDALARLQDLPSDETSSHATLSQAEFRAMLS 529

Query: 611  RLIDGETV-KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
             L++     +P    ++ + IL    +R+  FD +++ G ++   P + A+  F S  M+
Sbjct: 530  ALLESVAYKEPSAASAARITILPLNGARMRRFDGVVVVGCDDAQLPSSAAELMFFSNQMR 589

Query: 670  SDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDF 727
             +L L+  E    Q A D   +      ++ T         P   S W++RL        
Sbjct: 590  RELQLEDRESRFAQQARDLAEVLLNNDDVVLTWQRLGGRGEPKHVSGWIERLS------- 642

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                 + G         L + T       P P  P       +S      L   PY  +A
Sbjct: 643  -ACCARAGVAIEASMAPLVHQTFAETQGMPAPAAPQLVPA-RWSAQAYNMLRRCPYQFFA 700

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIID 840
             R+L L  +     D ++ D G L H ++    ++ + +          E    +++I D
Sbjct: 701  GRMLGLAGLDAVSDDLEKRDIGELLHRVLLRYHRELLARRERGETVPEAERLDRLREISD 760

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAIE---SIGI 896
              F          I +   + ++  S++  + + ++         I A + +       I
Sbjct: 761  DVFGALMAEDGNAIGYYRRWCEVLPSYVTWQTEREAQGWFWRGGEIDAGVDLPMPDGKPI 820

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETA--QKLIDPQLSLEAAALKAGSFSQIDC 954
             L G  DR+D    G   + DYKT    + +    +   D QL                 
Sbjct: 821  RLNGRIDRLDQGPGGAHAVLDYKTQSAARLKRKTSEVEEDCQLPFYGLL----------R 870

Query: 955  RKVANLFYIRLKQ-KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
                   ++ L+  +     +  +      D       + L + V  L+ G     + L 
Sbjct: 871  ADAVGGSWVALEGVRDGAASLQREVDLPDFDAAVAWLERQLRDDVMRLREG-----ARLP 925

Query: 1014 LSEK--SNIQSEYDHLARVAEWREEY 1037
                  + +      L R   W    
Sbjct: 926  AFGDASACMYCSARGLCRKGFWESTA 951


>gi|207723137|ref|YP_002253536.1| homologous recombinational repair protein (partial sequence c
            terminus) [Ralstonia solanacearum MolK2]
 gi|206588330|emb|CAQ35293.1| probable homologous recombinational repair protein (partial sequence
            c terminus) [Ralstonia solanacearum MolK2]
          Length = 755

 Score =  196 bits (498), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 111/697 (15%), Positives = 213/697 (30%), Gaps = 53/697 (7%)

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
             +    + +  A    +EA   A  L   L+  ++  AL+  DR +ARRV+  L R  + 
Sbjct: 88   DRPPPGLRIAGAARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVP 147

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            +    G  LSTT  ++ L   L+ +    D  A+  L+K P                  E
Sbjct: 148  VRDETGWKLSTTRAAAALMRWLDVVQGDGDTAALLDLLKSPFCLREADAPSSVAPAWVAE 207

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
            L      +N          +  +  T  +   V              A  L + +     
Sbjct: 208  LERRVRRRNVSGGWGRLRRLAAQRGTDTDAADVTD------------AGPLAERL----- 250

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
             L+  +       G+ ++  W  L    L  + +    +  +   +          S   
Sbjct: 251  GLLADEAALWRRAGHATLEAWVTLLAGTLDRLRMRTGLQNDDAGRQLLDWLDRLRVSVHG 310

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNE 651
               +  + +  EW  +++ L++          +   + IL    +R+  FD +++ G ++
Sbjct: 311  SADAGARFSLQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDD 370

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIP 709
               P    +  F S  ++ +L L    +   Q A D   +      ++ T         P
Sbjct: 371  AQLPSAQPEWLFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEP 430

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
               S WL+RL           ++      L   +     T  P              P T
Sbjct: 431  NRLSGWLERLQRRL---AVAGMRIDAPVVLPALQTASRPTDMPAPA------APALVPAT 481

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---K 826
             S +    L   PY  +  R+L+L  +     + ++ D G L H I+    ++ ++    
Sbjct: 482  LSAAAYNSLRRCPYQFFVGRMLRLGELGEVSDELEKRDVGELLHAILHRFHRQLLDTPMA 541

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNI 885
            +  +   L++ + D  F          + +   +  +  S+L+ +   ++         +
Sbjct: 542  DPADRLALLQSLTDERFGSLLAEDGHALRFYRRWQDVMPSYLDWQAAREAEGWRFEAGEV 601

Query: 886  PAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK--LIDPQLSLE 940
                +I       + L G  DRID      V + DYKT          K    D QL   
Sbjct: 602  DVDTSIALPGGQALRLRGRIDRIDTHPEHGVAVLDYKTQSPIALARKAKTPFEDCQLPFY 661

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
                   +                   +               D L+E+  K++  +   
Sbjct: 662  GLLDARAAVGGWVSLDG--------DARGDKRETGLPDFTEVVDWLTEQMGKDMTALAAG 713

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
                           E +        L R   W    
Sbjct: 714  APLPAFG-------DESACRYCAARGLCRKGYWSAGA 743


>gi|153813841|ref|ZP_01966509.1| hypothetical protein RUMTOR_00047 [Ruminococcus torques ATCC 27756]
 gi|317501977|ref|ZP_07960161.1| hypothetical protein HMPREF1026_02105 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145848237|gb|EDK25155.1| hypothetical protein RUMTOR_00047 [Ruminococcus torques ATCC 27756]
 gi|316896657|gb|EFV18744.1| hypothetical protein HMPREF1026_02105 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 1131

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 118/916 (12%), Positives = 254/916 (27%), Gaps = 138/916 (15%)

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKYWTERLVELNASSPVG 209
            +  ++         +E L     E     +     D ++   + + E L E   +    
Sbjct: 121 EVKSVLSEFAQYGVDFERLDDFMKEVPPESYLHYKLDDIRTIYEKFEEYLSEKYIT--KE 178

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             + ++     +        + + G TG  P   RL+  + +     ++   +D      
Sbjct: 179 EMLDVLSDAVPYSDILKGSVVAMDGFTGFTPVQNRLIGELFSVCEKVMITVTMD------ 232

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
                  ++  +           +  +  L+     K+ +++    +      R    S+
Sbjct: 233 -----GRENPYVYEHPYQIFALGKQMVTSLMKIAGEKKTEIEEPICLFERPVYRFRDCSE 287

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--- 386
                       T++              V+L E  +  +EA  +A ++R  +       
Sbjct: 288 M-------AFLETELFRYSGAKYNGSCESVSLHEVRSPGKEAKYVAESIRRLVRTKGYRY 340

Query: 387 KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
           +  A+I +D N+   V       F I + +     +        + SLL  I +   + +
Sbjct: 341 RDIAVIASDMNVYADVLEKACASFDIPVFMDHKKSILLNSFVEYVRSLLGMIQENFTYES 400

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           +   ++    +F   E                       I   K          K     
Sbjct: 401 VFRYLRSGYCEFTEDEIDRLENYCLAL-----------GIKGYKKWQQAWARKTKEA--- 446

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-------DWTKLTV 558
                   EE+ E    L    ++ I PL+     K  T  +++++       +  +  +
Sbjct: 447 -------DEEEVEKLNHLRVKFVEKIDPLMFVSRQKKKTVLDITLAVYEFIAGEHLQEKL 499

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              Q    ++        +E+  + +  LF K  E          E+ +++    +   V
Sbjct: 500 EQQQKFFAEQGELTLAKEYEQIYRIVMELFDKFSELLGDEPITLKEYCELLDAGFEEAKV 559

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN----- 673
                    + I     +R+ +   L   G N+ + P N      LS   +         
Sbjct: 560 GVIPPSIDQVVIGDVERTRMKDIRALFFVGANDVLLPGNAGTGGILSERDREKFKEKDIS 619

Query: 674 -LKTAEKYIGQAAHDFEMANGTRH--LIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFD 729
                ++ I         A       L  + S           +  +Q L  L       
Sbjct: 620 LSPGPKEKIYIQKFYLYTALTKPTELLSLSWSKVSGEGKSLRPAYLIQELRRLFPNLSVV 679

Query: 730 NLKKRGQCYLDWTRK--LDYTTKQPHYKR------------------------------- 756
           + + R     + TR+  ++   K    +R                               
Sbjct: 680 DEENRKLSDREITRRGGIEKVAKGICSRRLGLDNEWKELYTWFQKDGRNKKEIESILNAG 739

Query: 757 ----------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                     P+    L +     S + +++  +  YA +    L+L      +   +  
Sbjct: 740 FLHKTDTRLAPELTKELYSDRNRVSVTRLEKFASCAYAHFLSYGLRLSDRE--EYGFEAL 797

Query: 807 DRGTLFHNIITELIK---KRINKNTPEINHLMKQIIDSHFEKEN--------LPPHIDII 855
           D G + H  +    K    +  K       L  ++ID   E+               +  
Sbjct: 798 DLGNIAHKSLETFSKKADAQKMKWQEIPEALRDEMIDESVEESVIDYGNTVLFSSARNEY 857

Query: 856 WRHLFHKISH---SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
                 ++       L  + + +         +             +G  DRID      
Sbjct: 858 MITRIKRLIRTSVWALTKQIE-KGDFLPSGYEMQFG----------SGKIDRIDTCFDND 906

Query: 913 VD---ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLK 966
                +TDYKTG  +         +  QL +   A       +   +    A +FY R++
Sbjct: 907 CVYVKVTDYKTGMKSFDITALYHGLQMQLPVYLNAALDVEQRKHPHKTIVPAGIFYYRIQ 966

Query: 967 QKFKIDCITNDKKKYS 982
                +  T D  + S
Sbjct: 967 DPIVSEEKTQDAVERS 982


>gi|118575660|ref|YP_875403.1| superfamily I helicase [Cenarchaeum symbiosum A]
 gi|118194181|gb|ABK77099.1| superfamily I helicase [Cenarchaeum symbiosum A]
          Length = 977

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 109/1066 (10%), Positives = 261/1066 (24%), Gaps = 187/1066 (17%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
              +VE   +   N      +     +++A  E+     E           + +     ++
Sbjct: 30   RVIVERVLHMVRNGADPGRILCLTFSEKAAGEMLGRLKESIDTTEM---DVCTFHSFAKQ 86

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                      +  P    +     ++                L     +  P        
Sbjct: 87   ILE-------DNEPESGIVTSRGTISGPAGAAWAAAHIDEFKLGSHRVVIRPHEV----- 134

Query: 148  LAKNLADIIDII---ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                +  I++ I   + E     +L      +           L    + +   L E+  
Sbjct: 135  ----IRKIMEGISGFKRELVTPGELEKYLEGEENGE----LKDLCSVYQRYQGHLREMGI 186

Query: 205  SSPVGYQIALMRAEAEHLMK-----GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                      +R             G    I++     +  A   L+  +A +     + 
Sbjct: 187  IDFDDMVSEAVRLFRARDDVRSEYGGRYSHILVDELQDANYAQLELVRLIAGN-----IT 241

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
               D +     +              T  +                            + 
Sbjct: 242  AVGDENQSIYGFQGAYTSGFENFDDITGGA-------------------------ETISL 276

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                    + + L         +      +         V ++E  +E  EA  IA  + 
Sbjct: 277  NNNYRCTKTIAGLAAQCIANTPSGSQAGAVHPEGSP---VEIVECADEDSEAACIADRIV 333

Query: 380  MSLDENKKKS----ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                   + +    A++T      ++   EL   G+    S G  + +   +  L + L 
Sbjct: 334  QIRSPGGESAGYSIAVLTRKIADGKKFSDELELRGVPARYSGGDGIFSAGPARELLTYLE 393

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
                         L+                          +      DI  + +     
Sbjct: 394  IARAPASAGGEINLL------------------------MKKHGIPEGDIAVINTEAKKA 429

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                 +         R            +  +++ +  ++T   + +       I+    
Sbjct: 430  AYNDIHGNDHVLEVIRRGGNSGVRKKAELAGLVRRLDKVITLAGSYSPGTLAYHIAVPLA 489

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                 L++    EH            +    L ++          +    +  +      
Sbjct: 490  GLFRNLEDGAGAEH-----------LREACRLATEYDLLDPRGGLDG--LVGYLWAANSD 536

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR----VMQSD 671
            + ++   +    + +    +S+   FD + +    E   P       +         +  
Sbjct: 537  KNLRSDADAGGAVEVTTIHKSKGREFDAVFIADAVEDRLPLKYKGRKYQVPTTLLHGRRP 596

Query: 672  LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTI--ASRWLQRLLVLGGTDFF 728
               +       +    +      +  L  T S    +  T    SR+L+ +         
Sbjct: 597  QGKEKDRHMQEERRLLYVAMTRAKKNLCITYSKEYASKKTESKPSRFLEEMQFRSNPLVR 656

Query: 729  DNLKKRGQCYLD--------WTRKLDYTTK------------------------------ 750
              +   G                +                                    
Sbjct: 657  TFVFAGGPAQGAGTASTVSGLQEEAMRAVSVGDHGTAVQKVTDLAALEYMKEHGGLDGFV 716

Query: 751  QPHYKRPKP-----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
             P  + P P       P +  P   S ++I      P   +   ++ +   P        
Sbjct: 717  PPAARSPSPGLGAGAGPAKPAPLRLSSTKIGTYKKCPLMYWFAHVMTIPSPPGI-----P 771

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR--HLFHKI 863
               G + H ++ ++   ++N  TP+    +  +++    K  +        +       +
Sbjct: 772  MVMGGVIHKVLEKITDAQMNGQTPDEAGAL-AMLEGQL-KYAVYDSRTSFEQSKEEAESM 829

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
               F++      S  + I V    ++ I        G  DR++    G + + DYKTG  
Sbjct: 830  ISWFVKW--SAGSPNKPIAVEKKFELEIAGAEF--RGSIDRVERTPDGGLVLIDYKTGRT 885

Query: 924  P-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
                    +  D QL+L A A K   + ++  + V  L Y  L+    ++   ++    S
Sbjct: 886  KVSPGKIAE--DVQLNLYAEAAKK-LYKELPEKAV--LLY--LESGETVEYRLDEASVKS 938

Query: 983  ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            A           I  +    +G +        +  + +  +Y  + 
Sbjct: 939  A-----------IGRIEEYVDGIREGRFDPTPAVSTCMFCDYSGMC 973


>gi|51473593|ref|YP_067350.1| hypothetical protein RT0391 [Rickettsia typhi str. Wilmington]
 gi|81390120|sp|Q68WX4|Y391_RICTY RecName: Full=Uncharacterized protein RT0391
 gi|51459905|gb|AAU03868.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
          Length = 864

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 137/717 (19%), Positives = 242/717 (33%), Gaps = 115/717 (16%)

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            +++  E +N  EEA  IA           K  A++T D  L +     L +   ++    
Sbjct: 212  NISYSEPNNIYEEAKQIAYI---CELNKDKHIAIVTNDNKLKKVYCNFLDQKYSDLL--- 265

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L  T    +LT+++  I    D   +  L+K+PL                LEL+   
Sbjct: 266  GNDLRRTNIGELLTAIIKIICNNFDLKLLFLLLKNPLINCHS--------VQKLELMLSN 317

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
             N+       L  L                     +EE KE    L+D +          
Sbjct: 318  QNRFISSPKYLLQL------------------QFENEELKEYCANLIDILF--------- 350

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG-S 596
                  T    +I+    LT    + +        P +W +EEG+ L    + +I     
Sbjct: 351  ------TNNPHNITGILTLTQEIAEKLL-------PTIWEKEEGEVLIEFLTNLISYSKH 397

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                N  ++  I + L+       K   SS++ I    +  L  FD +IL   N   W  
Sbjct: 398  INLMNKKDFPKIFSFLLSNIK-HYKNTDSSSIIIGQPEDLVLCRFDLIILPHFNNEHWSP 456

Query: 657  NTAKNPFLSRVMQSDLNLKTAEK-YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
            N   +P LS+     LN+   +          F +    + ++   + + N   + +   
Sbjct: 457  NAKPHPLLSKKALQILNIDYNDAITTMLYTDYFNLLLQNKQIVILNAKKYNGKLSTSCNL 516

Query: 716  LQRLLV-LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
              RL +      F   L       LD   + D+                 + P   S ++
Sbjct: 517  FLRLQLKHVIPWFDPKLLTPATNSLDIKSQDDHKLTT----------ISHSFPSVLSVTD 566

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK----NTPE 830
            I+ LI +PY  YA++IL L    +  ++P  +D G   H ++ +  K    +    N  +
Sbjct: 567  IESLIRNPYGFYAKKILGLYKKDNIWEEPKISDFGNFIHKVLEKYSKNYDKQYVCLNLLD 626

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                +  I +       LP +   IW+      S +F+  + + + + ++I+  I  ++ 
Sbjct: 627  KQAALINIGNHILYSTILPAYTKKIWQIKLTAFSKTFILFDIERRKNCKEIYFEIKGELR 686

Query: 891  --IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
              I    I + G ADRI++ KS  + I DYKTG  P K+  +  + PQL +E   L    
Sbjct: 687  LNIAGQNIKIIGIADRIEVSKSNDITILDYKTGTIPTKKEIEFGLSPQLIIECLMLLENG 746

Query: 949  F--SQIDCRKVANLFYIRLKQK----------------------------------FKID 972
            F        + + L  I + +                                      +
Sbjct: 747  FNIKSFSNLETSQLSNIHIGRDTVICSRAQVVNPSYLKNYKSSCINKKLTIAYVRITSTE 806

Query: 973  CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
                  +     E   K    LI ++       + F          +  ++Y HL R
Sbjct: 807  PYIQTTEIDLNIETLHKHKAGLIRLLEYYVT-NKSFS----YDFNLSNYNDYRHLTR 858



 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 72/219 (32%), Gaps = 44/219 (20%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F +     +++                   V I +P      +L+   I+    K   LP
Sbjct: 7   FLQNFAEYIIDKLKKGI------------EVQIILPNNLLCLKLKQILIDKYKIK---LP 51

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
           II     +  +K  +D          +S I+ L  L+ +I  ++                
Sbjct: 52  IIIPFNAIFFKKNESDY---------ISKIEELFILSSIITEYKE--------------- 87

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
            LP +   ++  A+ L  + + +         +  ++      +W     FL+I    W 
Sbjct: 88  -LPFNLEESLKSAEILRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEICFLKWK 143

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
           + +      +   ++  +++ E   + K     II+AG 
Sbjct: 144 KAISLTQKYTKTIHEFNILQEEIIKIKK-RDKRIILAGI 181


>gi|113868366|ref|YP_726855.1| hypothetical protein H16_A2392 [Ralstonia eutropha H16]
 gi|113527142|emb|CAJ93487.1| two domain protein: Inactivated superfamily I helicase and RecB
            family exonuclease [Ralstonia eutropha H16]
          Length = 955

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 159/1043 (15%), Positives = 307/1043 (29%), Gaps = 119/1043 (11%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEITGK 70
            P   F  +   A         F      P   A   + VPT   I  +R           
Sbjct: 8    PGPDFLDQAATA------AWYFLDRCGAPEAGAH--VVVPTAAQIPGVRQALDAAARASG 59

Query: 71   KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
               +LP + +LG  + +       L     P  S   RLL + + +           +  
Sbjct: 60   SPRLLPRVLTLGHWLLD-------LPPEGAPVRSPAARLLAVQQAV-----------RGQ 101

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                      +   A  L++ L  I D +     +     A   +   +     A  L+ 
Sbjct: 102  DWLRRAFGAQNETAAWGLSQTLLSICDELNARWLE----DAAIRDDDEIDGDDRAGLLQG 157

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
            A +     L E          +A  +A +              G    +PA  R +  ++
Sbjct: 158  ALERTYSHLSERFLGEEARIVLAFWQALS--------------GPDDPLPARRRALRELS 203

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                G ++        P                         + +  +    L    +  
Sbjct: 204  QQLRGPVIWIAPTPPTP------------------------LEAAFLRDAAELVPVLQVG 239

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                            +   +      D          +P +      + ++ +    +E
Sbjct: 240  YDWTGQGGSDADWYQTLLALWPEARIVDDAEAVAPAPAMPALPPQRPSIRVVGSARFEDE 299

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A + A  L   L+E +++ AL+  DR +ARR +  L R G  +    G  LSTT  ++ L
Sbjct: 300  AAAAAAQLVQWLNEGRRQVALVAHDRVVARRARALLARAGAPVRDETGWKLSTTRAAAAL 359

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
                + + +  D  A+  L+K P      PE     A  AL    +R    +     L+ 
Sbjct: 360  MRWFDLLVRDGDTAALLDLLKSPFC---LPEVAGRGAAIALLERQVRREGITGGWARLRQ 416

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            L            H P    + + ED+  A          I  L               +
Sbjct: 417  LF----------GHAPTAAQQAATEDEGAAEAPRHAAHALIAVLADEAARWPRGLAQHPL 466

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
            + W +     L  + +       +   +            + ETG     +  E+  +++
Sbjct: 467  ATWLERLDGMLDGLGMRAALAADDAGSQLLDALARLQELPLDETGGHATLSQGEFRAMLS 526

Query: 611  RLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
             L++    K         + IL    +R+  F+ +++ G ++   P + A+  F S  M+
Sbjct: 527  ALLESVAYKEPSASGPARITILPLNGARMRRFEGVVIVGCDDAQLPSSAAELMFFSNQMR 586

Query: 670  SDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDF 727
             +L+L+  E    Q A D   +      ++ T         P   S W++RL        
Sbjct: 587  RELDLEDREARFAQQARDLAEVLLNNDDVVLTWQRYGSRGEPHHVSGWIERLA------- 639

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                 + G           + T       P P       P  +S      L   PY  +A
Sbjct: 640  -ACCARAGVSIEASAAAQAHETFADPQGMPAPAAEPALVPVRWSAQAYNMLRRCPYQFFA 698

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIID 840
             R+L L  +     + ++ + G   H+++    K    +               + +I +
Sbjct: 699  GRMLGLAGLETVSDELEKREIGEHLHHVLLRYHKDLQARRERGETLAEDRRLARLAEISE 758

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAKMAIE---SIGI 896
            + F          I +   + ++  S++  +   ++         + A + +       +
Sbjct: 759  AVFGALMAEDGNAIAYYRRWREVMPSYVAWQSAREAEGWFWRGGELDAGIDLPMPDGQPL 818

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLEAAALKAGSFSQIDC 954
             LTG  DR+D    G   + DYKT    + +   A+   D QL                 
Sbjct: 819  RLTGRIDRLDQGPGGAHAVLDYKTQSATRLKRKLAEVGEDCQLPFYGLL----------R 868

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014
               A   ++ L+   +       +      E +   L+   ++   +    Q        
Sbjct: 869  ADAAAGSWVSLEGAREGAAAAQREVGLPDFEAAVIWLER--QMRDDVMRLRQGARLPAFG 926

Query: 1015 SEKSNIQSEYDHLARVAEWREEY 1037
               + +      L R   W    
Sbjct: 927  DASACLYCTARGLCRKGFWESTA 949


>gi|251764598|sp|A9KTE7|ADDB_CLOPH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
          Length = 1147

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 118/913 (12%), Positives = 249/913 (27%), Gaps = 112/913 (12%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
              + +  II  +       ++L  + +  K           +    + + E L +    
Sbjct: 117 GFVEEMKSIISELAQYSIHTDELQKMKEVAKGKPLLNHKLTDIMTIYQAYEEFLQDKY-I 175

Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
           +       L     +         I + G TG  P+  +L+S +        V   +D  
Sbjct: 176 NSEEILDLLCDVIDDSSFVNDSE-ICLDGFTGFTPSQYKLLSHLMKKAKSVTVTITMDES 234

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLA-KLLDFLDIKREDVKRLGNVSNEMYGRS 324
                              N     H  + L+ K+ + L       K        +   +
Sbjct: 235 Q-----------------INRKQEEHQLFYLSGKMAEKLTDLAITQKIEIKPPILVASEN 277

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI---ALRMS 381
              S  F           +I      +  +   D+++  A +   EA    I    L   
Sbjct: 278 GGYSYRFHNSMALSALEKNIFRYPYKSFTEEQDDISITAAKDPMAEARHAVIEITRLLRE 337

Query: 382 LDENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
            +   K  A+++    +   +   EL   GI   +     + T      L S L+ +   
Sbjct: 338 EEYRYKDIAIVSGAMEVYGDIVKRELELAGIPCFVDHKKNILTNPVVEFLRSALDVVTHN 397

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
            D+ AI   +K  L  F   E  L       E   +          + +     +   + 
Sbjct: 398 FDYEAIFRFLKCGLTDFTMDEIDL------FENYVIAFGIRGKYRYEHEWERKYKTNYEV 451

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
           +   + + +  + +E   L   L          +        +      I  + +     
Sbjct: 452 DLEKINYVRECILKEFTPLYETLTSKKSSVRECVNALYNLLCTYHIEEKIHIFVEKFKAQ 511

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
            +        KL    +E+  + +  +F +++E          E+ DI+        V  
Sbjct: 512 GEK-----EDKLRAKEYEQIYRMVLEIFDRMVELLGEDVLPLKEFRDILDTGFREAKVGL 566

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLK 675
                  + +     +RL +   L   G+N+G+ PK       LS   +      ++ L 
Sbjct: 567 IPPSIDQILVGDIERTRLKDIKALFFLGVNDGIVPKANPGGGILSDAERQLFADHEIELS 626

Query: 676 TAEKYIGQAAHDFEMANGTR---HLIYTRSLRENNIPTIASRWLQR----------LLVL 722
             ++        +   N T+    L    S  + +  +I + +L            +   
Sbjct: 627 PTKRQTAYLTEFYLYLNLTKPQNKLYLYYSKLDVSGKSIRASYLLGKISKIFPKLKIYDA 686

Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY------------ 770
                 D L    Q        L     +      + +    +                 
Sbjct: 687 DRKSREDELLGTDQGLSYLISVLRDYEGEQPKLWREVYHLYVSGQIKGRISLDKVLQGVF 746

Query: 771 -----------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                                  S + +++     +A + +  L L+     +      D
Sbjct: 747 YQNYEQGLTKEVARKLYGETLLGSVTRMEKYAACAFAHFLQYGLSLEERQ--EYKISMPD 804

Query: 808 RGTLFHNIITELIKKRINKN------TPEINHLM-KQIIDSH---FEKENLPPHIDIIWR 857
            G+LFH  +    K     +        ++   + ++ +      F    L       + 
Sbjct: 805 IGSLFHEALERFSKALKELDISWHELPEDVRISLGERCVREAVENFGNGILESSKRSAYL 864

Query: 858 H-LFHKISHSFLE--HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK-SGFV 913
                +I     +    +  Q   E                ++L G  DR+DL +  G +
Sbjct: 865 ATRVERILQRTTKTLTHQLQQGVFEPGSYEQYFSH--ADRYLNLRGRIDRVDLYEQDGKL 922

Query: 914 D--ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQK 968
              + DYK+G            +  QL +  +A       Q    +   A +FY  L   
Sbjct: 923 YVKVIDYKSGSTSFDLMNLYYGLQLQLGVYLSAAMELMKEQYPNHEIHPAGVFYYNLDDP 982

Query: 969 FKIDCITNDKKKY 981
                 + ++   
Sbjct: 983 IVTKSSSVEEDIE 995


>gi|160881548|ref|YP_001560516.1| ATP-dependent nuclease subunit B [Clostridium phytofermentans ISDg]
 gi|160430214|gb|ABX43777.1| ATP-dependent nuclease subunit B [Clostridium phytofermentans ISDg]
          Length = 1171

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 118/913 (12%), Positives = 249/913 (27%), Gaps = 112/913 (12%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
               + +  II  +       ++L  + +  K           +    + + E L +    
Sbjct: 141  GFVEEMKSIISELAQYSIHTDELQKMKEVAKGKPLLNHKLTDIMTIYQAYEEFLQDKY-I 199

Query: 206  SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
            +       L     +         I + G TG  P+  +L+S +        V   +D  
Sbjct: 200  NSEEILDLLCDVIDDSSFVNDSE-ICLDGFTGFTPSQYKLLSHLMKKAKSVTVTITMDES 258

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLA-KLLDFLDIKREDVKRLGNVSNEMYGRS 324
                               N     H  + L+ K+ + L       K        +   +
Sbjct: 259  Q-----------------INRKQEEHQLFYLSGKMAEKLTDLAITQKIEIKPPILVASEN 301

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI---ALRMS 381
               S  F           +I      +  +   D+++  A +   EA    I    L   
Sbjct: 302  GGYSYRFHNSMALSALEKNIFRYPYKSFTEEQDDISITAAKDPMAEARHAVIEITRLLRE 361

Query: 382  LDENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
             +   K  A+++    +   +   EL   GI   +     + T      L S L+ +   
Sbjct: 362  EEYRYKDIAIVSGAMEVYGDIVKRELELAGIPCFVDHKKNILTNPVVEFLRSALDVVTHN 421

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             D+ AI   +K  L  F   E  L       E   +          + +     +   + 
Sbjct: 422  FDYEAIFRFLKCGLTDFTMDEIDL------FENYVIAFGIRGKYRYEHEWERKYKTNYEV 475

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
            +   + + +  + +E   L   L          +        +      I  + +     
Sbjct: 476  DLEKINYVRECILKEFTPLYETLTSKKSSVRECVNALYNLLCTYHIEEKIHIFVEKFKAQ 535

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
             +        KL    +E+  + +  +F +++E          E+ DI+        V  
Sbjct: 536  GEK-----EDKLRAKEYEQIYRMVLEIFDRMVELLGEDVLPLKEFRDILDTGFREAKVGL 590

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLK 675
                   + +     +RL +   L   G+N+G+ PK       LS   +      ++ L 
Sbjct: 591  IPPSIDQILVGDIERTRLKDIKALFFLGVNDGIVPKANPGGGILSDAERQLFADHEIELS 650

Query: 676  TAEKYIGQAAHDFEMANGTR---HLIYTRSLRENNIPTIASRWLQR----------LLVL 722
              ++        +   N T+    L    S  + +  +I + +L            +   
Sbjct: 651  PTKRQTAYLTEFYLYLNLTKPQNKLYLYYSKLDVSGKSIRASYLLGKISKIFPKLKIYDA 710

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY------------ 770
                  D L    Q        L     +      + +    +                 
Sbjct: 711  DRKSREDELLGTDQGLSYLISVLRDYEGEQPKLWREVYHLYVSGQIKGRISLDKVLQGVF 770

Query: 771  -----------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                                   S + +++     +A + +  L L+     +      D
Sbjct: 771  YQNYEQGLTKEVARKLYGETLLGSVTRMEKYAACAFAHFLQYGLSLEERQ--EYKISMPD 828

Query: 808  RGTLFHNIITELIKKRINKN------TPEINHLM-KQIIDSH---FEKENLPPHIDIIWR 857
             G+LFH  +    K     +        ++   + ++ +      F    L       + 
Sbjct: 829  IGSLFHEALERFSKALKELDISWHELPEDVRISLGERCVREAVENFGNGILESSKRSAYL 888

Query: 858  H-LFHKISHSFLE--HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK-SGFV 913
                 +I     +    +  Q   E                ++L G  DR+DL +  G +
Sbjct: 889  ATRVERILQRTTKTLTHQLQQGVFEPGSYEQYFSH--ADRYLNLRGRIDRVDLYEQDGKL 946

Query: 914  D--ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQK 968
               + DYK+G            +  QL +  +A       Q    +   A +FY  L   
Sbjct: 947  YVKVIDYKSGSTSFDLMNLYYGLQLQLGVYLSAAMELMKEQYPNHEIHPAGVFYYNLDDP 1006

Query: 969  FKIDCITNDKKKY 981
                  + ++   
Sbjct: 1007 IVTKSSSVEEDIE 1019


>gi|323489924|ref|ZP_08095146.1| ATP-dependent nuclease subunit B [Planococcus donghaensis MPA1U2]
 gi|323396431|gb|EGA89255.1| ATP-dependent nuclease subunit B [Planococcus donghaensis MPA1U2]
          Length = 1158

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 134/1057 (12%), Positives = 300/1057 (28%), Gaps = 160/1057 (15%)

Query: 53   TKRAIQELRSEFIEITGKKSTIL--PIIKSLG------------DVVEEKFTADLLLSYN 98
            T+   +E+  E           L  P   S               ++  +      L++ 
Sbjct: 15   TRFVQEEIVDELKRQADGDPIFLIVPDQMSFSTEYRLAAAYNMNGMIRAQAVTFKRLAWR 74

Query: 99   LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
            +   V  I R         +    L +  ++ +      L    A        +  ++  
Sbjct: 75   VLQEVGGISRREVDTFGYRMLIRSLLEDNREEF-----QLFRRAAGKRGFTDQIEQLVKE 129

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAA----DFLKIASKYWTERLVELNASSPVGYQIAL 214
                     +L+A++                  L++       RL ++   S     +AL
Sbjct: 130  FARYCVDCGELNAIRFSLVEAGAPKTLLDKAQDLELILTEIENRLGKVFVDSEG--HLAL 187

Query: 215  MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
            +  +  H        I I G          ++  +  H     +   +D           
Sbjct: 188  LSEKIPHSDLIKSSTIYIDGFVTFTAREYEILFELMKHAKSVTIALPMDEKTDP------ 241

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
                 N   S    S +  + L +      I  ++   L                     
Sbjct: 242  -----NDEQSLFYQSANTAHRLTEQAAKEGIDIDNSVYL---------------ALPRRF 281

Query: 335  DTSDMRNTDILENKIPNIQ-KCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSAL 391
               ++ + +   +  P  + +   +V+L+EA N R E  ++A A+R  +    +  + A+
Sbjct: 282  MNPELEHIERHFDDFPIQKIQGQGNVSLVEASNRRAEMHAVARAIRDQVRNGFRYNEIAI 341

Query: 392  ITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            +     +   +     +++ I   IS    +          S+L ++     + +I   V
Sbjct: 342  LYRQPEIYDELIHTIFSQYEIPYFISQKKSMLHHPLIEFSRSVLESVVSNYSYESIFRAV 401

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
            K  L     P        + LE   +          D K     +    + +T +   + 
Sbjct: 402  KTDLFFPQGPATKWRERSDLLENFVIANGIYGERWFDEKRWFYKKYRGLEFHTSIQTDEE 461

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT---------CL 561
              ++ +      L+        PL   K     +     I++   L +           L
Sbjct: 462  LAAQVELHAVRDLIR------EPLAQLKEQLKLSKTGRDIAESLFLFIEKMDVYAKIQDL 515

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            +     EHR L     E+       +  + +      + +    + I+    +       
Sbjct: 516  REREESEHRLLAATEHEQAWNQWVGVLDQFVLMFGEKEVDLPTAVKILDEGFETLEFSRI 575

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LK 675
                  + +     +RL++  ++ + G N+GV PK   ++  L+   +            
Sbjct: 576  PPSLDQVMVSKIDLARLMDIKSVFVVGANDGVLPKRIEQDGLLTDTDREWFAQIGFELAP 635

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRS---LRENNIPTIASRWLQ--------------- 717
            T++  +    +    A  +   + T S     E     + S ++Q               
Sbjct: 636  TSKMRLMDETYMVYRAFTSASDLLTVSFPIADEEGKALLPSLYIQKLKDMLSIDTVPAVI 695

Query: 718  ---RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ----------------------- 751
                L+ +   ++  + +          R  + + +                        
Sbjct: 696  DPEELVDVSPMEYISHPRASLAYLTSQLRSGELSAEWRAVYHYYEEDPFWSSIINRILSP 755

Query: 752  -----PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                     R     PL   P + S S ++     P+A Y    L+L+     +      
Sbjct: 756  IKPNKADPLREAIAEPLYGTPISSSVSRVETYYGCPFAHYVAYGLRLEERS--QYKLAAP 813

Query: 807  DRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDSHFEKENL--------PPHIDII 855
              G LFH  I  +  + +      +       + +     E+ +           H    
Sbjct: 814  AMGDLFHAAIKWISDEVLRLGISWSSLTQKQCQNLAKEAIEQLSPYFVNHILISSHRYRY 873

Query: 856  WRHLFHKISH--SFLEHEEKIQSSIEKIFVNIPA---------KMAIE-SIGIHLTGFAD 903
             +H    I    +++  +    S    I + +           +++++    +++ G  D
Sbjct: 874  IQHKLEGIIRQTAYMLSKHAKVSGFVPIALEVGFGPKETIPPLEISLDRGRKMNVRGRID 933

Query: 904  RIDLLK-SGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVA 958
            RID     G   + I DYK+             +  Q       AL        +  + A
Sbjct: 934  RIDSTDIHGKPYLRIVDYKSSKQGLDLSNVYHGLSLQTFTYLDVALTHSERWLGEEAEPA 993

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
             + Y  +      + +    K  +A+EL E+  K+  
Sbjct: 994  GVLYFHM-----HNPMLKLTKLLTAEELDEEMAKSFK 1025


>gi|331088207|ref|ZP_08337126.1| hypothetical protein HMPREF1025_00709 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330408451|gb|EGG87917.1| hypothetical protein HMPREF1025_00709 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 1131

 Score =  195 bits (496), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 118/916 (12%), Positives = 254/916 (27%), Gaps = 138/916 (15%)

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKYWTERLVELNASSPVG 209
            +  ++         +E L     E     +     D ++   + + E L E   +    
Sbjct: 121 EVKSVLSEFAQYGVDFERLDDFMKEVPPESYLHYKLDDIRTIYEKFEEYLSEKYIT--KE 178

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             + ++     +        + + G TG  P   RL+  + +     ++   +D      
Sbjct: 179 EMLDVLSDAVPYSDILKGSVVAMDGFTGFTPVQNRLIGELFSVCEKVMITVTMD------ 232

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
                  ++  +           +  +  L+     K+ +++    +      R    S+
Sbjct: 233 -----GRENPYVYEHPYQIFALGKQMVTSLMKIAGEKKTEIEEPICLFERPVYRFRDCSE 287

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--- 386
                       T++              V+L E  +  +EA  +A ++R  +       
Sbjct: 288 M-------AFLETELFRYSGAKYNGSCESVSLHEVRSPGKEAKYVAESIRRLVRTKGYRY 340

Query: 387 KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
           +  A+I +D N+   V       F I + +     +        + SLL  I +   + +
Sbjct: 341 RDIAVIASDMNVYADVLEKACASFDIPVFMDHKKSILLNSFVEYVRSLLGMIQENFTYES 400

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           +   ++    +F   E                       I   K          K     
Sbjct: 401 VFRYLRSGYCEFTEDEIDRLENYCLAL-----------GIKGYKKWQQAWARKTKEA--- 446

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-------DWTKLTV 558
                   EE+ E    L    ++ I PL+     K  T  +++++       +  +  +
Sbjct: 447 -------DEEEVEKLNHLRVKFVEKINPLMFVSRQKKKTVLDITLAVYEFIAGEHLQEKL 499

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              Q    ++        +E+  + +  LF K  E          E+ +++    +   V
Sbjct: 500 EQQQKFFAEQGELTLAKEYEQIYRIVMELFDKFSELLGDEPITLKEYCELLDAGFEEAKV 559

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN----- 673
                    + I     +R+ +   L   G N+ + P N      LS   +         
Sbjct: 560 GVIPPSIDQVVIGDVERTRMKDIRALFFVGANDVLLPGNAGTGGILSERDREKFKEKDIS 619

Query: 674 -LKTAEKYIGQAAHDFEMANGTRH--LIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFD 729
                ++ I         A       L  + S           +  +Q L  L       
Sbjct: 620 LSPGPKEKIYIQKFYLYTALTKPTELLSLSWSKVSGEGKSLRPAYLIQELRRLFPNLSVV 679

Query: 730 NLKKRGQCYLDWTRK--LDYTTKQPHYKR------------------------------- 756
           + + R     + TR+  ++   K    +R                               
Sbjct: 680 DEENRKLSDREITRRGGIEKVAKGICSRRLGLDNEWKELYTWFQKDGRNKKEIESILNAG 739

Query: 757 ----------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                     P+    L +     S + +++  +  YA +    L+L      +   +  
Sbjct: 740 FLHKTDTRLAPELTKELYSDRNRVSVTRLEKFASCAYAHFLSYGLRLSDRE--EYGFEAL 797

Query: 807 DRGTLFHNIITELIK---KRINKNTPEINHLMKQIIDSHFEKEN--------LPPHIDII 855
           D G + H  +    K    +  K       L  ++ID   E+               +  
Sbjct: 798 DLGNIAHKSLETFSKKADAQKMKWQEIPEALRDEMIDESVEESVIDYGNTVLFSSARNEY 857

Query: 856 WRHLFHKISH---SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
                 ++       L  + + +         +             +G  DRID      
Sbjct: 858 MITRIKRLIRTSVWALTKQIE-KGDFLPSGYEMQFG----------SGKIDRIDTCFDND 906

Query: 913 VD---ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLK 966
                +TDYKTG  +         +  QL +   A       +   +    A +FY R++
Sbjct: 907 CVYVKVTDYKTGMKSFDITALYHGLQMQLPVYLNAALDVEQRKHPHKTIVPAGIFYYRIQ 966

Query: 967 QKFKIDCITNDKKKYS 982
                +  T D  + S
Sbjct: 967 DPIVSEEKTQDAVERS 982


>gi|332312756|gb|EGJ25851.1| ATP-dependent helicase/deoxyribonuclease [Listeria monocytogenes str.
            Scott A]
          Length = 1163

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 124/965 (12%), Positives = 278/965 (28%), Gaps = 124/965 (12%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L     L +     +       LA++   ++ EE   ED+                  
Sbjct: 103  AALDQRDKLKIFSRATSRKGFYAELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKIHD 161

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + I  + + E L   +        + L+  +        +  I+I G T        ++ 
Sbjct: 162  ISIIYQKYEELLA--DKFLENEDYLRLLAEKITESDYLNQTEIVIDGFTSFSQQELTVIG 219

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   V   L+      I + + E S    S+         Y+L +L     I  
Sbjct: 220  ALMRKCDKVTVSLALNV---PEIKHGLDEYSMFKASTEAY------YALLELAKLNGINV 270

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K               ++ ++        +                 ++++ +A+N 
Sbjct: 271  EEDKFFLENKRAKTESLAFLANAWGHNKFMAFKEE-------------PHNLSVHQANNR 317

Query: 368  REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   +A  +R       +    A++T +  +     +  +  + I I I     +S  
Sbjct: 318  RAEIEGVAREIRQLTLNGYRYQDMAILTRNLGDYDVLCETVMESYNIPIFIDKKRAMSKH 377

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         +  + R   + LE   L     + 
Sbjct: 378  PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLRRKADILENYVLENGIQNK 437

Query: 484  DIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNK 541
               + +   +  +I     N      +   ++        L+ + L  +   L   KT  
Sbjct: 438  WKWEKEGDWIYRKIRGLSTNVLPQTDEEIQTQSIINEMRSLIVNPLSTLELNLKKAKTGM 497

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599
                      +               E +    L    E+    +S+L  + +E      
Sbjct: 498  EFALALYHFLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSAISALLDEFVEVLGEET 557

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   +++II   +D             + +     ++LL+   +   G+N+GV P    
Sbjct: 558  LDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 617

Query: 660  KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI 711
             N  LS   +  L         +A+  IG+            +  L  +    +     +
Sbjct: 618  DNGILSDQDRDALRAEVSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 677

Query: 712  -----------------ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                              S +L    +L   +    ++ +       T +L    +    
Sbjct: 678  SESNYLRKIKGQFKKLSESVYLTDPGLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPL 737

Query: 755  ------------------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778
                                                 + K    L  +    S S +++ 
Sbjct: 738  SSVWWDAYNSYFENGKESRMAKQVLSSLYYENKTKPLQEKTAKNLFGETIHASVSRMEKF 797

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829
             +  +  +A+  LKL+   HF+      D G +FH  +  +  +    N           
Sbjct: 798  FSCEFQHFAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGSLTDQEC 855

Query: 830  -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885
             ++  L    +    + E L         ++   +I      + +E+   S+   + + +
Sbjct: 856  RQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 915

Query: 886  PAKMAIESIGIHLT----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQK 931
               +  +   + ++          G  DRID+ +      + I DYK+  +         
Sbjct: 916  DFGLKGDIPPLKISLQANSELLLQGRIDRIDMAEQEDRTFLRIIDYKSSSHDLALTEVYY 975

Query: 932  LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  Q+      +   +   I    + A + Y  +  ++         +  + +      
Sbjct: 976  GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKNSK 1035

Query: 991  LKNLI 995
            +K LI
Sbjct: 1036 MKGLI 1040


>gi|47092375|ref|ZP_00230165.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes str. 4b
            H7858]
 gi|226224876|ref|YP_002758983.1| ATP-dependent deoxyribonuclease (subunit B) [Listeria monocytogenes
            Clip81459]
 gi|47019152|gb|EAL09895.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes str. 4b
            H7858]
 gi|225877338|emb|CAS06052.1| Putative ATP-dependent deoxyribonuclease (subunit B) [Listeria
            monocytogenes serotype 4b str. CLIP 80459]
 gi|328465846|gb|EGF37034.1| ATP-dependent helicase/deoxyribonuclease subunit B [Listeria
            monocytogenes 1816]
          Length = 1157

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 124/965 (12%), Positives = 278/965 (28%), Gaps = 124/965 (12%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L     L +     +       LA++   ++ EE   ED+                  
Sbjct: 97   AALDQRDKLKIFSRATSRKGFYAELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKIHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + I  + + E L   +        + L+  +        +  I+I G T        ++ 
Sbjct: 156  ISIIYQKYEELLA--DKFLENEDYLRLLAEKITESDYLNQTEIVIDGFTSFSQQELTVIG 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   V   L+      I + + E S    S+         Y+L +L     I  
Sbjct: 214  ALMRKCDKVTVSLALNV---PEIKHGLDEYSMFKASTEAY------YALLELAKLNGINV 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K               ++ ++        +                 ++++ +A+N 
Sbjct: 265  EEDKFFLENKRAKTESLAFLANAWGHNKFMAFKEE-------------PHNLSVHQANNR 311

Query: 368  REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   +A  +R       +    A++T +  +     +  +  + I I I     +S  
Sbjct: 312  RAEIEGVAREIRQLTLNGYRYQDMAILTRNLGDYDVLCETVMESYNIPIFIDKKRAMSKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         +  + R   + LE   L     + 
Sbjct: 372  PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLRRKADILENYVLENGIQNK 431

Query: 484  DIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNK 541
               + +   +  +I     N      +   ++        L+ + L  +   L   KT  
Sbjct: 432  WKWEKEGDWIYRKIRGLSTNVLPQTDEEIQTQSIINEMRSLIVNPLSTLELNLKKAKTGM 491

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599
                      +               E +    L    E+    +S+L  + +E      
Sbjct: 492  EFALALYHFLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSAISALLDEFVEVLGEET 551

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   +++II   +D             + +     ++LL+   +   G+N+GV P    
Sbjct: 552  LDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611

Query: 660  KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI 711
             N  LS   +  L         +A+  IG+            +  L  +    +     +
Sbjct: 612  DNGILSDQDRDALRAEVSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671

Query: 712  -----------------ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                              S +L    +L   +    ++ +       T +L    +    
Sbjct: 672  SESNYLRKIKGQFKKLSESVYLTDPGLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPL 731

Query: 755  ------------------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778
                                                 + K    L  +    S S +++ 
Sbjct: 732  SSVWWDAYNSYFENGKESRMAKQVLSSLYYENKTKPLQEKTAKNLFGETIHASVSRMEKF 791

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829
             +  +  +A+  LKL+   HF+      D G +FH  +  +  +    N           
Sbjct: 792  FSCEFQHFAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGSLTDQEC 849

Query: 830  -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885
             ++  L    +    + E L         ++   +I      + +E+   S+   + + +
Sbjct: 850  RQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909

Query: 886  PAKMAIESIGIHLT----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQK 931
               +  +   + ++          G  DRID+ +      + I DYK+  +         
Sbjct: 910  DFGLKGDIPPLKISLQANSELLLQGRIDRIDMAEQEDRTFLRIIDYKSSSHDLALTEVYY 969

Query: 932  LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  Q+      +   +   I    + A + Y  +  ++         +  + +      
Sbjct: 970  GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKNSK 1029

Query: 991  LKNLI 995
            +K LI
Sbjct: 1030 MKGLI 1034


>gi|326776761|ref|ZP_08236026.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
 gi|326657094|gb|EGE41940.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
          Length = 1208

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 136/1120 (12%), Positives = 271/1120 (24%), Gaps = 178/1120 (15%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLVE+           A V +   +++A  ELR       G  +   P   +        
Sbjct: 65   TLVESVAARVNRGADPARVLVLTFSRKAAVELRDRMAARLG--AARGPQATTFHSFCYAL 122

Query: 89   FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              A        +    +S  ++ + +  L+    +        L          S     
Sbjct: 123  VRAHQDADLFADPLRLLSGPEQDVTVRELLAGQLDLEK---AGLAHVRWPDELRSCLTTR 179

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A  +  ++          + L A         W  AA FL         + V   A  
Sbjct: 180  GFADEVRAVLARSRELGLGPDALAAFARRTGRPDWSAAAQFLAEYLDILDAQGVLDYAEL 239

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG----------- 255
                 +   R E    + G+   + +     + PA  RL+  +A +              
Sbjct: 240  VHRAVLLAERPEVAERLAGSYDAVYVDEYQDTDPAQVRLLHALAGNRGRTPEYTRGRGEE 299

Query: 256  ----AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK-----------LL 300
                     G       A            T           Y+                
Sbjct: 300  GRGDGGRGDGGRGEEARAGGARSEAARGGRTLIAFGDPDQSIYTFRGADVNGILDFPDAF 359

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
               D     V  L        G              + +    +  ++ P   +    V 
Sbjct: 360  RRADGDPAPVGVLTTSRRSGAGLLAATRLLTRRMPLTRLPADMVRAHRDPAAVRDGGRVE 419

Query: 361  LIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDIS 416
                     E  +IA  LR +  E+     + + L+ A       V+  LT  G+ +++ 
Sbjct: 420  TYTYPTASTELENIADLLRRAHLEDGVPWQEMAVLVRAGGRSLPAVRRALTSAGVPLEVD 479

Query: 417  AGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE--- 472
                PL      + L + L  +       A+  L+     +    ++  +      E   
Sbjct: 480  GDDLPLRHEPAVAPLLTALRTVA----TAALRGLLDGDRDEADGADRDEADGAGRDEAGG 535

Query: 473  --------------------------------------LVALRGNKNSYDIMDLKSLVLD 494
                                                    A R        +D ++ +  
Sbjct: 536  ADPGETGGAYQGDTAGADPGETAGADPGETGGADPGETGGAGRAGARMSSWLDTETALTL 595

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLV------DHILQCITPLVTYKTNKNSTC-GN 547
              +   +       +   +  D+E A  +       + + + +       T+  +   G 
Sbjct: 596  LTSPLGSMDAADLRRLGRALRDEERAAGIRVPAPSDELLARALAEPERLVTHDPAYAHGA 655

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNL----WFEEEGKTLSSLFSKIIETGSCIKANAI 603
              +    +     L+     E           W     +      +        + A   
Sbjct: 656  QRLGALLRKARELLEGGGTAEEALWALWNGTPWPGRLERAALRGGAGGRNADRDLDAVCA 715

Query: 604  EWIDIITRL-------------------IDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             +                          I  +T+  +  +   + ++    S+ L +  +
Sbjct: 716  LFETAARAEERTGGRGALNFLEEVDAQDIAADTLSRRTARPDAVRLMTAHRSKGLEWRLV 775

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA-----HDFEMANGTRHLIY 699
            +L G+ EG+WP    +   L         L          A                L+ 
Sbjct: 776  VLAGVQEGLWPDLRRRGSLLEADRIGGDGLAEPLTPGALLAEERRLFYVAATRARDRLVV 835

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY----- 754
            T      +     SR+L  L V           +R         +L  TT  P       
Sbjct: 836  TAVKAPADDGDQPSRFLTELGV--EPRDVTGRPRRPLAVAALVAELRATTVDPAASEALR 893

Query: 755  ------------------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778
                                                 R         QP T S S + QL
Sbjct: 894  EAAAHRLARLAALTDDEGQPLVPAAHPYRWWGLEEPTRSAVPLRDRDQPVTLSGSALDQL 953

Query: 779  IN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
             N      +  R      +            G + H ++ + +         ++      
Sbjct: 954  ANTCALQWFLGR-----EVKADAPATAAQGFGNVVH-VLADEVASSRTPADLDVLMERLD 1007

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-- 895
             + +    +          +         FL      +             + +E+    
Sbjct: 1008 SVWNGLAFDAPWKSEQEKDQAR--AALERFLHWHVLDRGGRTPTASEHDFDVTLEAGEYA 1065

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
            + + G  DR++    G   + D+KTG   P K+       PQL++   A++ G+  ++  
Sbjct: 1066 VRIRGSMDRVEQDAEGRAYVVDFKTGKGAPTKDEVASH--PQLAVYQLAVREGAVDEVFD 1123

Query: 955  R---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
                +      ++L+Q        +   K  A E      
Sbjct: 1124 GRRPEPGGAELVQLRQPAPKKEGGDAFPKVQAQEPLAGEW 1163


>gi|229828349|ref|ZP_04454418.1| hypothetical protein GCWU000342_00407 [Shuttleworthia satelles DSM
            14600]
 gi|229792943|gb|EEP29057.1| hypothetical protein GCWU000342_00407 [Shuttleworthia satelles DSM
            14600]
          Length = 1199

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 94/960 (9%), Positives = 247/960 (25%), Gaps = 140/960 (14%)

Query: 150  KNLADIIDIIETEEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
              +  ++  +       ++   L      G  +   A+ L +  + + E +         
Sbjct: 116  DEIKSLLTEMAQYGIGPKEFADLAELTDMGSSFRRKAEDLSVIYRAFREAIE--GRYITA 173

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC---- 264
               +  +    +         I I G TG  P   ++++ +    +   V   +D     
Sbjct: 174  EEVLERLAQLMDQSALIKDAVIAIDGFTGFTPIQKQVLAQMMRLASSIYVTLTMDPGERI 233

Query: 265  ---HIPTAIWNTITEKSTN----------ITSSNTTYSTHPQYSLAKLLDFL-----DIK 306
               H+   ++    E                      + +P+++ A +L +L       K
Sbjct: 234  TGSHLDYELFAMTKEMGEGLVRLAGENRCPIEEPVCLTGNPRFASAPMLAYLEANLFRPK 293

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                 +  +  +         + +      +     +               + L  A +
Sbjct: 294  SRPYGKELSGLDGKETAGCSQADTKETASCAQSDAKENASRAQGESDPKMRQIRLGRAAS 353

Query: 367  EREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
             R+E       +R  + +        + +     + A        +  +   +     + 
Sbjct: 354  FRDELAFAGEEIRKKIRDQGGRYRDFAIVCANLSDYADYAGQIFDKMDLPYYLDQEQDIL 413

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
                   + S L+   +     ++   ++  LA     +  L         +        
Sbjct: 414  FHPLVEFILSSLSLFTEDFSEESLMQQLRSGLAGIDPSDADLLERYIHARRIRGFARYRR 473

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                 +++   +++        V   +  +  +  +    + +         +       
Sbjct: 474  PFSGRVRNFSQEQM------LRVEQLRKGIVADISDFRQSMCEENAVTRDRALAIYAYLQ 527

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                    +   +  +    N C  E  ++           +     K+ +     K + 
Sbjct: 528  --------AHEVEEKLEARANACRAEGDEIAASIHSRVFGLVMETLEKMSDLLGEEKMSL 579

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             ++  ++   +   +V        ++ I     +RL +  TL + G ++   P++   + 
Sbjct: 580  SDFAQLLEAGLRAISVGTVPPSFDSVVIGDLERTRLEHIKTLYVLGASDAAIPRSAESSG 639

Query: 663  FLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTIASR 714
              S+  +  L            +          +A    +  L+ + +   ++   +   
Sbjct: 640  LFSQAEREKLREKQIDLAPGDRERAFMQRFYLYLALTKPSEQLVVSYARLSSDGSALRES 699

Query: 715  WLQRL----------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR-------- 756
            +L  L            L G      L             L   +++   +         
Sbjct: 700  YLIGLICRLFPGLGVENLEGRADLQRLVTAPAALDYLPDALRSLSEKEPSREEGQLACAI 759

Query: 757  -------------------------------PKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                                            +    +       S S ++Q     YA 
Sbjct: 760  YEVLKEDKNFTDRAEELFKTAFSEQGQDRLSERLIKRVSGDLIQGSVSRLEQFCRCAYAY 819

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-------PEINHLMKQI 838
            Y R    L      + + D  D G L H  +    K+   +          +   L+++ 
Sbjct: 820  YLRY--GLLLQEEEEPEIDFLDMGNLHHQTLEFFSKRMKERKLSWKEISDSDAEALLEEA 877

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHS---------FLEHEEKIQSSIEKIFVNIPA-- 887
              +   +       +++      ++            +   E+  +         +    
Sbjct: 878  FRNAVGQM---ERAELLENRRQAQVIRRMKSVLRCSIWALREQVTRGDFVPEEFEMSFGP 934

Query: 888  -----KMAIESIG---IHLTGFADRID--LLKSGFVD-ITDYKTG-DNPKKETAQKLIDP 935
                  M  +      + L+G  DR+D      G    + DYK+G            +  
Sbjct: 935  RDQLSSMRFQLGEREKLQLSGKIDRVDCMRTPEGIYVKVMDYKSGNQKLDLTRLYHGLQI 994

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            QL L  +A              A LFY  + +          ++    +E+ E  L  L 
Sbjct: 995  QLVLYMSAALEKLGRGEKKAHPAGLFYFHIDE-----PWVKSREGAGPEEIQEDILDELK 1049


>gi|289577483|ref|YP_003476110.1| ATP-dependent nuclease subunit B [Thermoanaerobacter italicus Ab9]
 gi|289527196|gb|ADD01548.1| ATP-dependent nuclease subunit B [Thermoanaerobacter italicus Ab9]
          Length = 1153

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 120/948 (12%), Positives = 254/948 (26%), Gaps = 142/948 (14%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
               K +++ I  ++  E   + L  +      +        + +    + E L   N   
Sbjct: 117  GFIKKISETITELKRFEVSPDKLLEIAETIDYLGLREKLRDISLIYSKFEESL-HQNYID 175

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                   L     E+  +       I G TG  P   R++  +    +   V   +D   
Sbjct: 176  QEDELALLAEKL-EYSSQFEGAEFWIDGFTGFTPKQYRVIEKLLKKASRVNVTLCMDTSC 234

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                ++ I       T+  T         L ++    +I  E    L   + + +  S  
Sbjct: 235  ---NFSEIDTTDLFYTTKKTEDK------LLEICQRNNISYEKPVDLNGGTPKRFRESEE 285

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
            +S       +   +                 D++L +A N   E    A  +   + +  
Sbjct: 286  LSFLEKHFFSYPYKV----------YPSETKDISLFKAVNVYSEVEETARDIIRLVRDKG 335

Query: 387  ---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                +  +   D     + VK   +++GI   I   I +        +TSL +   K   
Sbjct: 336  LRYSEIVVAARDLNRYHKLVKAIFSQYGIPYFIDLKIEIKNNPIIVFITSLFDIHLKRWS 395

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            + ++   +K   A     +  L         +     K       L          ++  
Sbjct: 396  YESVFRYLKTGFANLEIEDISLIENYVLANGIKGDKWKEEAWNYRLDYRFDRLTMEEEEK 455

Query: 503  THVPHWQSRLSEEDKELAVLL--VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
              +        +    L                  T             I    +     
Sbjct: 456  EIIEKVNEIKEKITIPLQGFYKKFSKSKNVREACGTLYDFLVEMGLPQKIQKLIEKFKE- 514

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                   E        + +    +  +  +++E     K    ++  I++   D   +  
Sbjct: 515  -------EKEYDTANQYAQVWDIVVDVLDQLVEVIGGEKVTVEQFAKILSIGFDEYQIGT 567

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-- 678
                   + +      +  N   L + G+N+G++P +      L+   +  L     E  
Sbjct: 568  IPPALDEVLVTSVDRMKSHNAKALYIIGVNDGIFPASHFDERILTDEDREILTSHDVELD 627

Query: 679  -----KYIGQAAHDFEMANG-------------------TRHLIYTR------------- 701
                 K   +    +                           +I +R             
Sbjct: 628  NDTKTKVFEEQFLVYTALTSTSKFLRISYPIADHEGKSMRPSIIISRLKKIFPKIKQFSN 687

Query: 702  ------SLRENNIPTIASR---------------------WLQRLLVLGGTDFFDNLKKR 734
                  +    N  +  S                      WL         D +     R
Sbjct: 688  VVEMDTAEENLNRVSTPSPTFNEMITAIKKWDVTDKIHPLWLDVYKWYAKNDRWKPRLTR 747

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                + +T +++                L      +S S +++    P+A + +  LK  
Sbjct: 748  ALEGIYYTNQVEKVPAHK-------MKKLYGDKLRFSVSRLEKYAACPFAYFVQYGLKAR 800

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINK-------NTPEINHLMKQIIDSHFEKEN 847
                     +  D G   HNI+    K    +       +    +  +  I+D   +K  
Sbjct: 801  ERK--IYSFEPPDLGIFMHNILDRFSKALEEEELTWQEVDKEWCDEAVSIIVDDMIQKIP 858

Query: 848  L----PPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPA---------KMAI- 891
                              +I  +  ++  E   +SS + +   +           K+ + 
Sbjct: 859  GYILNSSPRYKFLAERLKRILSNAVWIVSEHIKRSSFKPVDHEVAFGDNQKYPPIKIELS 918

Query: 892  ESIGIHLTGFADRIDL---LKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAG 947
                I+L G  DRID+       ++ I DYK+G            ++ QL +   A+   
Sbjct: 919  NGEEINLIGRIDRIDIFKKEDEAYIRIIDYKSGNKTLDLSDVFYGLELQLLIYLDAILES 978

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            +  +      A +FY ++        I    K  S ++L ++  K L 
Sbjct: 979  AIKEGTTLNPAGVFYFKID-----YPIIKADKDMSDEDLQKEIFKRLR 1021


>gi|295702781|ref|YP_003595856.1| ATP-dependent nuclease subunit B [Bacillus megaterium DSM 319]
 gi|294800440|gb|ADF37506.1| ATP-dependent nuclease, subunit B [Bacillus megaterium DSM 319]
          Length = 1166

 Score =  195 bits (494), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 116/972 (11%), Positives = 245/972 (25%), Gaps = 142/972 (14%)

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADF 187
            + +  L L  + +      + L  ++   +        L  +K +               
Sbjct: 102  HQKEELRLFANSSEQAGFIEELEKMVKEFKQYTVDAPSLEEMKKKLQAEDEKVLADKLHD 161

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            L +      ++L+           + L+  +        +  I + G     P    ++ 
Sbjct: 162  LHLIYGELEKQLMTKYVD--GEDYLKLLSEKVASSAYLAQAKIYVDGFHHYTPQELTVLV 219

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +        +    D      I N +        +            L  L     I  
Sbjct: 220  ELMKVCREVKIAVTSDYSYQDFIPNDLHLFRLTSETYQE---------LMGLAAENGIDI 270

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            ++                                    E   P  Q    ++ L+ A + 
Sbjct: 271  QEPILFNEQKR------------HQNSPELAYLERYYDERPTPEFQSEPENIQLLPAVSR 318

Query: 368  REEAISIAIALRMSLDENK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLST 423
            R E   IA  +   + +     +  ALI  +  +    ++     + I   I     +  
Sbjct: 319  RAEVEGIAREVLSLVRDRGYRYRDIALIVRNAEDYHDLLQTIFQDYEIPYFIDQKRAMFH 378

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK-NALELVALRGNKNS 482
                  + S+L  +     +  I  +VK  L      + +  R + + LE   L      
Sbjct: 379  HPLVEFVRSVLEVVSGSWRYETIFRVVKTDLLFPLSSDVHRLREEMDELENYVLAYGIQG 438

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                  +     +  + ++       +    E+       ++   +  +         K 
Sbjct: 439  SKWTSKEPFTYRKYRSLEDMNLGKTDEELAFEQKINELKNMIVPPIYSLQQ-----KLKQ 493

Query: 543  STCGNLSISDWTKLT--------VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
               G     +  +          +  L+N C +E +       E+  K +  LF + +E 
Sbjct: 494  GKIGKEKAEELYRFLTNLDIPQKIEALRNRCEEEGKLQEAREHEQVWKAILHLFDQFVEM 553

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                K +   + D+    +D             + +     SRL +     + G+N+GV 
Sbjct: 554  MGEEKVSISLFADLFETGLDSMQFALVPPALDQVVVASFERSRLSDIKASFVLGVNDGVI 613

Query: 655  PKNTAKNPFLSRVMQSDL---NLKT----AEKYIGQAAHDFEMANGTRH-LIYTRS-LRE 705
            P     +  LS   +  L    L       +K   +    +   + +   L  +     E
Sbjct: 614  PAKPKSDGLLSEKEREQLLESGLLLAPTGRQKLFDEQFLIYLALSSSSEKLYVSYPLANE 673

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                 + S  + R+  L        L        +  +    T                 
Sbjct: 674  EGKTLLPSLVINRVKELFPLLQEKLLMTEPTDLEEEKQVDYITNPLTSIAHLASQLQGWK 733

Query: 766  QPRTYS----------------------------------------------------FS 773
            +    S                                                     S
Sbjct: 734  RHYPMSSAWWDVYNFYVENPDWNSYSRKVLSSLFYKNEAKRLTKKTSQRLYGKHIQASVS 793

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII----------TELIKKR 823
             +++    PYA +A   LKL     F       D G LFH  +           +  K  
Sbjct: 794  RMEKFEACPYAHFASHGLKLKERKVF--KLAAPDIGELFHAALKMISDELRGGQKEWKNL 851

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKISHS--FLEHEEKIQSSIEK 880
              K+  +++      +    + E L       +  H   +I      +  E    S    
Sbjct: 852  TRKDCQQLSTAAVNELAPRLQNEILLSSNRHHYLTHKLQQIIERASLVLSEHAKMSGFVP 911

Query: 881  IFVNIPA--KMAIE--------SIGIHLTGFADRIDLLKSGF---VDITDYKTG-DNPKK 926
            + + +       +            + L G  DR+D  +S     + I DYK+       
Sbjct: 912  VGLELGFGPSAELPSMQFTLPNGHTMELVGRIDRVDKAESSKGLLLRIVDYKSSDKALNL 971

Query: 927  ETAQKLIDPQLSLEAAAL---KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
                  +  Q+      +                A + Y  +      + + N  K    
Sbjct: 972  VEVYYGLSLQILAYLDIVVTYAEQLLHDNRGALPAGVLYFHV-----HNPMINSTKALQP 1026

Query: 984  DELSEKSLKNLI 995
            D++  +  K   
Sbjct: 1027 DQIEAEIFKKFK 1038


>gi|254480462|ref|ZP_05093709.1| hypothetical protein GPB2148_3550 [marine gamma proteobacterium
            HTCC2148]
 gi|214039045|gb|EEB79705.1| hypothetical protein GPB2148_3550 [marine gamma proteobacterium
            HTCC2148]
          Length = 869

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 105/722 (14%), Positives = 221/722 (30%), Gaps = 95/722 (13%)

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRVKLELTRFGI 411
                + +      + ++E  +IA        ++      ++ AD N  R     L R   
Sbjct: 193  AAGEATIQARSYADRQQELSAIARWAAQEYQDDPDCSLGILLADMNGDRAPLEFLMRREF 252

Query: 412  ----------NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                       ++ S GI L           +L+   +      +  LV          +
Sbjct: 253  DSLGDKYNSLPVNFSTGITLDRAPVIRDALRILSVCGETLPMTDLLGLVNSRFTDCNEAD 312

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                R    L                     L     ++ N     + SR  +   E  +
Sbjct: 313  SD--RVVRLLHQ-------------------LFDDGEEQLNLGRLRFLSRSVKAGGEQGL 351

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             + + +  C                    SDW K     L          L +L F++  
Sbjct: 352  AMGERLASCSE--------LRLQRLTQRPSDWVKSICDVLGVWAWPGEGPLDSLEFQQVE 403

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
                +L           + N    + ++ R      +       S + +LG LE+  L F
Sbjct: 404  AWYKALQEFSGLDSLAGRVNFHTALGMLKRCCQNR-ISQPQTADSGIQVLGPLEAAGLPF 462

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANGT-RHLI 698
            D++   GL    WP  +  NPF+   +Q   ++   ++E+    A+   +         I
Sbjct: 463  DSIWFCGLQGNRWPAPSRPNPFIPMALQRKHDMPHSSSEREWNYASTLTDQYRAACDRFI 522

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
             + S + +  P + S  L    +    +  +      + +L        + +Q    +  
Sbjct: 523  ASYSRQLDGAPEVPSPLLGAFPL----EHMEATVLIPEQWLAQASA--SSLEQNLNAQAP 576

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                 E          ++Q  N P+  +A + L L+ +  ++      DRG++ H+ +  
Sbjct: 577  MVSKSEMSHIRGGSGILQQQANCPFRAFASKRLLLEPLGDYRAGLSAADRGSILHDALYV 636

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEK----------ENLPPHIDII--------WRHLF 860
            L  +  +      +  +  +     ++            +P  + ++             
Sbjct: 637  LWGEIND------SAALHALGREALDEKIASASAAAINAVPESVRLLVGMHCLDLESQRL 690

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
             K+   +++ E       + +    P    +  + + L    DR+D L+ G   + DYK+
Sbjct: 691  QKLMTQWVQLELARNP-FKVVAREEPIDFKLGELSLSL--RVDRVDELEDGSRIVIDYKS 747

Query: 921  GDNP-KKETAQKLIDPQLSLEAAA--LKAGSFSQIDCRK--------VANLFYIRLKQKF 969
            G +       ++   PQL L   A  ++A SF+Q+  R         V  +  ++     
Sbjct: 748  GRSSLADWLGERPSQPQLPLYGLAENVQALSFAQVRARDCRMQGLGSVEGIAGVQ---SD 804

Query: 970  KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
                +           L  +  +NL ++ T    G     + +     +        L R
Sbjct: 805  IAKAVKRYSDCEDWSSLMTQWQQNLGKLATDFLAG----YAQVDPLPAACNYCGLQALCR 860

Query: 1030 VA 1031
            V 
Sbjct: 861  VD 862


>gi|297543795|ref|YP_003676097.1| ATP-dependent nuclease subunit B [Thermoanaerobacter mathranii subsp.
            mathranii str. A3]
 gi|296841570|gb|ADH60086.1| ATP-dependent nuclease subunit B [Thermoanaerobacter mathranii subsp.
            mathranii str. A3]
          Length = 1153

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 120/948 (12%), Positives = 253/948 (26%), Gaps = 142/948 (14%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
               K +++ I  ++  E   + L  +      +        + +    + E L   N   
Sbjct: 117  GFIKKISETITELKRFEVSPDKLLEIAETIDYLGLREKLRDISLIYSKFEENL-HQNYID 175

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                   L     E+  +       I G TG  P   R++  +    +   V   +D   
Sbjct: 176  QEDELALLAEKL-EYSSQFEGAEFWIDGFTGFTPKQYRVIEKLLKKASRVNVTLCMDTSC 234

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                ++ I       T+  T         L ++    +I  E    L   + + +  S  
Sbjct: 235  ---NFSEIDTTDLFYTTKKTEDK------LLEICQRNNISYEKPVDLNGGTPKRFRESEE 285

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
            +S       +   +                 D++L +A N   E    A  +   + +  
Sbjct: 286  LSFLEKHFFSYPYKV----------YPSETKDISLFKAVNVYSEVEETARDIIRLVRDKG 335

Query: 387  ---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                +  +   D     + VK   +++GI   I   I +        +TSL +   K   
Sbjct: 336  LRYSEIVVAARDLNRYHKLVKAIFSQYGIPYFIDLKIEIKNNPIIVFITSLFDIHLKRWS 395

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            + ++   +K   A     +  L         +     K       L          ++  
Sbjct: 396  YESVFRYLKTGFANLEIEDISLIENYVLANGIKGDKWKEEAWNYRLDYRFDRLTMEEEEK 455

Query: 503  THVPHWQSRLSEEDKELAVLL--VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
              +        +    L                  T             I    +     
Sbjct: 456  EIIEKVNEIKEKITIPLQGFYKKFSKSKNVREACGTLYDFLVEMGLPQKIQKLIEKFKE- 514

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                   E        + +    +  +  +++E     K    ++  I++   D   +  
Sbjct: 515  -------EKEYDTANQYAQVWDIVVDVLDQLVEVIGGEKVTVEQFAKILSIGFDEYQIGT 567

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-- 678
                   + +      +  N   L + G+N+G++P +      L+   +  L     E  
Sbjct: 568  IPPALDEVLVTSVDRMKSHNAKALYIIGVNDGIFPASHFDERILTDEDREILTSHDVELD 627

Query: 679  -----KYIGQAAHDFEMANG-------------------TRHLIYTR------------- 701
                 K   +    +                           +I +R             
Sbjct: 628  NDTKTKVFEEQFLVYTALTSTSKFLRISYPIADHEGKSMRPSIIISRLKKIFPKIKQFNN 687

Query: 702  ------SLRENNIPTIASR---------------------WLQRLLVLGGTDFFDNLKKR 734
                  +    N  +  S                      WL         D +     R
Sbjct: 688  VVEMDTAEENLNRVSTPSPTFNEMITAIKKWDVTDKIHPLWLDVYKWYAKNDRWKPGLTR 747

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                + +T +++                L      +S S +++    P+A + +  LK  
Sbjct: 748  ALEGIYYTNQVEKVPAHK-------MKKLYGDKLRFSVSRLEKYAACPFAYFVQYGLKAR 800

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINK-------NTPEINHLMKQIIDSHFEKEN 847
                     +  D G   HNI+    K    +       +    +  +  I+D   +K  
Sbjct: 801  ERK--IYSFEPPDLGIFMHNILDRFSKALEEEELTWQEVDKEWCDEAVSIIVDDMIQKIP 858

Query: 848  L----PPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIE-- 892
                              +I  +  ++  E   +SS + +   +          + I   
Sbjct: 859  GYILNSSPRYKFLAERLKRILSNAVWIVSEHIKRSSFKPVDHEVAFGDNQKYPPIKIGLS 918

Query: 893  -SIGIHLTGFADRIDL---LKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAG 947
                I+L G  DRID+       ++ I DYK+G            ++ QL +   A+   
Sbjct: 919  NGEEINLIGRIDRIDIFKKEDEAYIRIIDYKSGNKTLDLSDVFYGLELQLLIYLDAILES 978

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            +  +      A +FY ++        I    K  S ++L ++  K L 
Sbjct: 979  AIKEGTTLNPAGVFYFKID-----YPIIKADKDMSDEDLQKEIFKRLR 1021


>gi|229822912|ref|ZP_04448982.1| hypothetical protein GCWU000282_00204 [Catonella morbi ATCC 51271]
 gi|229787725|gb|EEP23839.1| hypothetical protein GCWU000282_00204 [Catonella morbi ATCC 51271]
          Length = 1178

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 107/993 (10%), Positives = 267/993 (26%), Gaps = 140/993 (14%)

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             P+S+I +++ + RL+  ++++L              +          A+ LA + D + 
Sbjct: 88   KPISSIGQIMLIKRLLARYQDQL-------------QVFRGQVKHQGFAEKLAQLFDELY 134

Query: 161  TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
              + + E+L                  L +  + + + +          + +  + +  +
Sbjct: 135  LGQIQPENLSQ--VPDLNQQEAKRLAELALLYQGFIQEIE--GQVLGHYHDLQRLDSYLK 190

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                     +++           +L++T+        +   L                  
Sbjct: 191  AHPLNRPTYLVVDHHYFFNGQQLQLLTTLIQQCQAVWITLPLS--------QQAARSKAY 242

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     T+ Q  L      L +                 +    +         +  
Sbjct: 243  DPLIEVARHTYGQMQLLAQSLHLPVA--------EDWTINQVQEGYQANILTLAQAFENH 294

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN 397
                 +     + +  + V   E D  + E    +  +   + +     +   ++T D +
Sbjct: 295  LRLAPQELSQPLNQVKTHVIW-EHDAIQTEVRHTSNKIHQLVSQEGYRYRDILVLTRDMD 353

Query: 398  LARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
              R +   L  +  I       + +        L S L           I  ++K  L  
Sbjct: 354  RYRPLVTALFEQNDIPYFYDHAVIMGQHPLVLWLESGLKLYRYRYQLADIFGILKSGLWL 413

Query: 457  FGFPEKYLSRA--------------KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
                   ++                 + LE V L      Y    L        A +   
Sbjct: 414  PADLRAAMAENPQDGPVLEEEFKAQVDLLENVVLANGYVGYRFAQLSFEWRFDQADRPYV 473

Query: 503  THVPHWQSRLSEEDKELAVL--LVDHILQC-ITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                    +   +  +      L D      +  L ++   K +      + +       
Sbjct: 474  NAAGQVTGQTYGQVVQALRESFLADFAPYQDLAQLTSFSGQKAAEWLYQWLEEVGVKDRL 533

Query: 560  CLQNVCLDEHRKLPNLW-FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              +     E   L     +E+  +TL++   +  +     +    E+ +++   ++  T 
Sbjct: 534  IARRDQAIEKGDLALSRQYEQVWQTLTASLDEFYQLYGEAELTFSEFQELLLTGLNEATF 593

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--LKT 676
                     + +      ++  +    + G +E   PK+  ++  LS   +  L   L  
Sbjct: 594  HIIPPALDQVMVTSMESPQVQAYKVCFVLGADELTLPKHHQEDSLLSVANRQSLGESLLP 653

Query: 677  AEKYIGQAAHDF---------EMANGTRHLIYTRSLRENNIPTIASRWLQRL-------- 719
             ++    + H++          + + +  L  +    +       S +LQ+L        
Sbjct: 654  YQQLRQSSQHNYSLELLMTQQVLLSASDRLYLSYVAMKGQQTVKLSPYLQQLAKQFHLPI 713

Query: 720  -------------------------------------------LVLGGTDFFDNLKKRGQ 736
                                                             DF   +  +  
Sbjct: 714  KTYTHTLIHQNQVKLSRLEFGRYPVQMSSLLQLVHHYSQQKDRPSAAFLDFLTLMASQNP 773

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                   +L    + P    P+    L  Q  T S S+++Q   DPY+ +    LK+   
Sbjct: 774  HTWVLLAQLFQFNQLPQNLTPETALALFGQKMTASVSKLEQYYQDPYSHFLLYGLKIRPR 833

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN-HLMKQIIDSHFEKENLPPHID-I 854
               +   +    G  +H+ + +  + +  +   E N   ++ ++           +    
Sbjct: 834  QQLE--LNAAGAGDYYHDFLDKFTQAQEARPDFETNFASIQTLMAEDLRFNIFGTNPRMH 891

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIE--KIFVNIPAK--------MAIESIGIHLTGFADR 904
            + +    +    FL        ++    +   +           + ++   + L G  DR
Sbjct: 892  LIKRKLDQHLRQFLNVSLAQSQALTVQPVATELVFGSKQEAGLILPLDKGSLTLRGKIDR 951

Query: 905  IDLLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
            ID   S     + DYK+G            +D Q+          +  +    +    FY
Sbjct: 952  IDADPSQNYYQVVDYKSGKKTFNLVDFYYGLDLQVLTYL----KVASQRYPHAQAVGAFY 1007

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              L   F    +   +    + +  + +   L 
Sbjct: 1008 QSLAGGF--VKVDGKQMARLSQDGLDLAKNQLH 1038


>gi|315445541|ref|YP_004078420.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
 gi|315263844|gb|ADU00586.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
          Length = 1038

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 121/1041 (11%), Positives = 267/1041 (25%), Gaps = 110/1041 (10%)

Query: 27   NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS----EFIEITGKKSTILPIIKSLG 82
            +  LV+             SV +   + R   ++R+      +   G+ +   P+++++ 
Sbjct: 33   SSLLVDTAVAHIAAGCDPESVLLLTGSARLSAQVRASITSALLGAGGRAAVREPLVRTVH 92

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY--PESPLSLPI 140
                         + +  P      RL+  A    I R  L   ++D    P        
Sbjct: 93   SYAFGVLRLAAQRNGSPPP------RLITSAEQDGIIRELLAGDVEDGPASPVRWPEQLR 146

Query: 141  SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
               + +  A  L D++            L  +        W  A  F +   +       
Sbjct: 147  PALSTVGFATELRDLMARCSERGIDPVALQRIGRHAGRPEWQAAGRFAQAYEQ------- 199

Query: 201  ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                   +    + +   A        G   + G+     A    + +        +++ 
Sbjct: 200  -------IMLLRSAVGMAAPQATVPALGAAELVGAALEAFAMDADLLSAERSRVQLLLVD 252

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
                  P A        +    +          +        L         L       
Sbjct: 253  DAQHLDPQAARLVEVLAAGAELTVIAGDPHQTVFGYRGADPALLRGDGPALILNRSHRCA 312

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
               +  I+        +D         +          +A+  A +   E+  IA ALR 
Sbjct: 313  APLADAIAAITRRLPGADASREFTGRGE-------QGTLAVRIAASPHAESALIADALRR 365

Query: 381  SLD----ENKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLN 435
            +         + + ++ +       +   L   G+ ++      PL+       L ++L 
Sbjct: 366  AHLVDGVPWDRMAVIVRSVPRTGASLGRALAAAGVPVEDPHPDVPLANQPAVQALLTVLE 425

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            A  +  D      LV  P+ +         R      + A         +  L   V   
Sbjct: 426  ATAEKLDGERALALVTGPIGRVDPVSLRQLRRTLRRGVTAPDRGFGELLVEALGRDVAAL 485

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                                       L   +             + +     + S   K
Sbjct: 486  PDEHAR-----------------ALRRLRAVLTAARRSAEQGGDPRQTLWQAWNRSGLQK 528

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
              +   +       +   +L        ++  + +     S                +  
Sbjct: 529  RWLAAAERGGPAAAQAERDLDAVTALFDVAEQYVERTAGASLRGLIDHI------TGLSL 582

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD---- 671
               +        + ++    +    +D ++L GL EG+WP  + +   L+     D    
Sbjct: 583  PPARDDARSGDAISLISAHAALSGEWDFVVLAGLQEGLWPNVSPRGGVLATQHLVDVIDG 642

Query: 672  -----LNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLREN--NIPTIASRWLQRLLVLG 723
                   L +    + +       A    R  +   ++  +  +   + S +   L  + 
Sbjct: 643  VAAPGHRLSSRAPLLAEERRLLIAAMGRARSRVLVTAVDSDSGDEAALPSPFCHELAAMA 702

Query: 724  -GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE--AQPRTYSFSEIKQLIN 780
                    L  R    L     +            +        A  +    +       
Sbjct: 703  TEPVPEPALPIRAPRVLSPAAVVGRLRSVVCAGSDEVSEDERVCAAAQLARLATAGVHGA 762

Query: 781  DPYAVYARRILKLDFIPHFKKD----PDRTDRGTLFHNIITELIKKRINKNTPE------ 830
            DP + Y  R L  D       D       +    L    +  L+++       +      
Sbjct: 763  DPSSWYGARELSSDEPLWDGDDHVVTLSPSTLQMLADCPLRWLLERHGGARGRDVRSTLG 822

Query: 831  ------------INHLMKQIIDSHFEKENLPPHIDI-IWRHLFHKISHSFLEHEEKIQSS 877
                           ++   +D  + K            R    ++  +FL+     +  
Sbjct: 823  SLVHALVSESGTAESVLLDELDKVWGKLPFDAQWHSDNERIRHLEMLATFLKWRSDTRGE 882

Query: 878  IEKIFVNIPAKMAIES-----IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
            + ++   I     +        G+ + G  DR++    G + + D KTG +P  +   + 
Sbjct: 883  LTEVGTEIDVDGVVAGGDGDGPGVRVRGRLDRLERDSEGRLVVVDVKTGKSPVSKDDAQA 942

Query: 933  IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
               QL++   A+ AG  +  D      L Y+    K      T   +     E+ E    
Sbjct: 943  HA-QLAMYQLAVAAGLIADGDEPGGGRLVYL---GKTTGGRATERHQDAVTPEVRELWEA 998

Query: 993  NLIEIVTLLQNGEQPFISHLR 1013
             + E     Q     F++ + 
Sbjct: 999  RVHEAAAATQGPS--FVARVN 1017


>gi|303229709|ref|ZP_07316495.1| putative ATP-dependent nuclease subunit B [Veillonella atypica
            ACS-134-V-Col7a]
 gi|302515606|gb|EFL57562.1| putative ATP-dependent nuclease subunit B [Veillonella atypica
            ACS-134-V-Col7a]
          Length = 1176

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 106/968 (10%), Positives = 252/968 (26%), Gaps = 141/968 (14%)

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
            + I      +   +      + L L    A     +  L  +     +     ++L +  
Sbjct: 86   QSISQLGRTMLLSLVMKRKGAELGLLSQAAKRPEFSSVLQGLFSEFRSFRIGPDELESGA 145

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
                          L +    + E L              L+ A  +  +      + + 
Sbjct: 146  QRVSNGVLQKKLQELALCMSAYEEELQLHGQIDGDPIMD-LVHALPQSPLME-NCHVFVD 203

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
            G     P    L+  + +    +++       +P      +  K  +             
Sbjct: 204  GFHWFTPVHFELLYMLFDLAVESVIT----VDLPADPKRILANKGRHGI----------- 248

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                + ++ L+   ++                +  +SF     + +  +           
Sbjct: 249  --FNRSVEILENLYKEYGT------------KLFFQSFTGHRGTPVLQSLEEHFFHGKHN 294

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLD----ENKKKSALITADRNLARRVKL-ELTR 408
                 + L+ A N   EA  +A  +   ++       +   ++  +            TR
Sbjct: 295  TTAEHIPLVSAYNRECEADWVARDILSYIESSPNARYRDICIMLRESETYGDTLEKVFTR 354

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
            +GI        P++      ++T LL  +        +  L+K  L            A 
Sbjct: 355  YGIPHFGDRQRPMNNHPLGELMTDLLGIVKHSYSRDIMFRLLKTDLTPLT------REAV 408

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
            + LE   L    +           +  +A   +       +       ++  + ++    
Sbjct: 409  DELENYVLEFGIDHLQWERDNWSYMRYVAGLSDEEQPDAPRHARVNASRQAIMDILIPWF 468

Query: 529  QCITPLVTYKTNKNSTCGNLSISDW--TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
               T    +   +        + +    +           D   +      E+    +  
Sbjct: 469  DFATSSDAHTGAEWCKHIYRVLEELQVPQRLYEWSLEAERDGDLESKAS-HEQMYNAVIG 527

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
               +++           E I ++   +D             + I     +   ++  + +
Sbjct: 528  FLDEMMVLTDTETLTLDEMIALLEEALDNVHYSMIPPSLDHVAITTIERAYSQSWPRVYV 587

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDL---NLKTAE----KYIGQAAHDFEMANGTR-HLI 698
             GLN+GV+P+N      +    +  L    L  AE    K   +    +        HL 
Sbjct: 588  IGLNQGVFPQNMGDEGLIKDREREALAEAGLVLAEGALPKAFNENFLLYLAMTRAEQHLT 647

Query: 699  YTRSLRENNIPTIASRW-LQRLLVLG----------------GTDFFDNLKKRGQCYLDW 741
             + +   +    + S   ++RL  LG                  ++     +      + 
Sbjct: 648  ISYAGSNDEGEGLESSLVIKRLQSLGFCTSPIEVPFTIQDGTEDEYLWRPYQSLSLLSER 707

Query: 742  TRKLDYTTKQPHYKR-----------PKPFPPLEAQ------------------------ 766
               L                       +P     ++                        
Sbjct: 708  WGALFSGVPVSPLWWGLYNWARHDGAYRPRLEDVSRGIRDNNDVPVIAPELVTGLFLKRG 767

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL------- 819
              + S + +++    P+  YA+  LKL+      +     + GT  H  +  L       
Sbjct: 768  YMSGSVTRLEKYRQCPFKFYAQYGLKLEPRK--VRSFGAPEIGTFLHANLERLGTQLLSE 825

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEK--------ENLPPHIDIIWRHLFHKISHSFLEHE 871
             K+  + +      L  ++     E+              I+        K     ++  
Sbjct: 826  HKQWRDLDETAQQELCARVAADILEENRYDEDEKTAYDKAIEERVVRTLQKTVSRLVDW- 884

Query: 872  EKIQSSIEKIFVNIPA-------KMAIESIG---IHLTGFADRIDLL-KSGFVD--ITDY 918
               +SS + +++            + +       + L G  DRID   + G     + DY
Sbjct: 885  -SSRSSFDTMYLEQDFGRPNGWDSIKVSLGEDRYLRLVGQIDRIDEYNRDGHTYGMVIDY 943

Query: 919  KTGDNPKKET-AQKLIDPQLSLEAAALKAGSFSQI--DCRKVANLFYIRLKQKFKIDCIT 975
            K+G            +  QL     AL+  ++ +        A + Y  +K         
Sbjct: 944  KSGSTSVNAQEIYYGLKLQLMTYLLALE-SAYKKHHDQPMTPAAVVYTYVKNPRTPAGEP 1002

Query: 976  NDKKKYSA 983
               ++  A
Sbjct: 1003 VSYEEAKA 1010


>gi|325663488|ref|ZP_08151898.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
            4_1_37FAA]
 gi|325470387|gb|EGC73618.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
            4_1_37FAA]
          Length = 1136

 Score =  194 bits (492), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 114/965 (11%), Positives = 259/965 (26%), Gaps = 131/965 (13%)

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
            R + L  +       L         E  L +       +     +  +I      +   E
Sbjct: 82   RRIVLDDI----GKSLLLRKAAGDMEGELKVLGGNIRRLGYISEVKSVISEFTQYDVSAE 137

Query: 168  DLHALKNEKYGM---WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
            +L  +          +W      ++   + + E L            + +  A  +    
Sbjct: 138  ELERVMESGEIGPQLYWK--LHDIQKLQEKFGEYL--QGKYITGEELLDVFSAVVQQSEI 193

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                 +++ G TG  P   R++  +        V   +D                     
Sbjct: 194  LKDSVVVLDGFTGFTPVQNRVLGQLLKICRKVTVTVTIDQREDPYQLK------------ 241

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                  +  ++L+K +    +     + +          +          +         
Sbjct: 242  ----HKYQLFTLSKQMVTGLVHIAAEENIEVEPPVQLYGNRGEVPVRFRENLPLAFLEQN 297

Query: 345  LENKIPNIQKCFSD-VALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLA 399
            L      +     D ++L    N +EE++ I   +   +          + +++     A
Sbjct: 298  LFRYTKRVYDNKQDMLSLHAVKNPKEESVFIVSEILRLVRTKGYRYRDMAVIVSDMETYA 357

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
              ++      G+   +     +        L SLL  I +   + +    ++  L  F  
Sbjct: 358  EYMERAFRICGVPFFMDHKRSVLLNSFVEYLRSLLAMIDENFSYESTFRFLRTNLTGFTR 417

Query: 460  PEKYLSRA-KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
             E         AL +   +  K  +      +   D +              R++E  K 
Sbjct: 418  EEVDDVENYVVALGIRGYKKWKEMWVRQSPHADAEDMLRWNAFRQKFIEKLERITEVLKR 477

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                + +        LV  +  +      +   +  +L +                  + 
Sbjct: 478  RKKTVREVTEAIYAFLVQEEMQQKIGIYEVQFQERGQLVLA---------------KEYA 522

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            +  + +  LF K  E     + +  E+ +++   +    V         + +     +RL
Sbjct: 523  QIYRIVLELFDKFTELLGEEQISLGEYRELLDAGLQEAKVGVIPPGIDQVVVGDIERTRL 582

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMAN 692
             +   L L G+N+   P        LS   +             A++          +  
Sbjct: 583  QDVKVLFLAGVNDTWLPGKQGAGGLLSEYDRERFQEQKVALAPGAKEQAYIQKFYLYLHL 642

Query: 693  G--TRHLIYTRSL-RENNIPTIASRWLQRL-----------------------LVLGGTD 726
               + +L  T S           +  +  L                              
Sbjct: 643  TKPSEYLYLTFSKISSEGKSLRPAYLIADLKRMYPELLVEEEEDKPFWEKELTPETALPY 702

Query: 727  FFDNLKKRGQCY--------------LDWTRKLDYTTKQPHYKRP------KPFPPLEAQ 766
              + L+ R + +                W  +++      H KRP      +    L   
Sbjct: 703  LVEGLQVRSETFGGAWKELYTWYRKHPKWHAQMEQLLAANHLKRPHDQLSEEVARKLYGT 762

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
                S + +++     YA +    LKL+            D G +FH+ + +  KK    
Sbjct: 763  ILENSVTRLEKFSACAYAHFLTYGLKLEER--AVYGFKPVDLGNIFHSAMEQFSKKLEEH 820

Query: 827  ---NTPEINHLMKQIIDSHFEKEN--------LPPHIDIIWRHLFHKISHS--FLEHEEK 873
                T     L +Q+I+   E                +        ++     +   ++ 
Sbjct: 821  QVTWTTVSEELREQLIEESVEAGVTNYGNAVLYSSSRNEYVITRMKRLLRRTVWALTKQL 880

Query: 874  IQSSIEKIFVNIPAK---------MAI-ESIGIHLTGFADRIDLLKSGFVD---ITDYKT 920
             +         I            +++ E   + L G  DR+DL +        + DYKT
Sbjct: 881  EKGDFVPAGYEISFGNLAHLESVNLSLSEHARMRLRGKIDRVDLYEDEEHVYVKVIDYKT 940

Query: 921  G-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQKFKIDCITND 977
            G    +       +  QL +   A+      +   ++   A +FY ++K  F    +  +
Sbjct: 941  GAKAFQLGEMYHGLQLQLIVYLNAVMEMEEQKHPEKEIVPAGIFYYQMKDPFVEKEVREN 1000

Query: 978  KKKYS 982
              + +
Sbjct: 1001 LGEKA 1005


>gi|297538866|ref|YP_003674635.1| putative DNA repair protein [Methylotenera sp. 301]
 gi|297258213|gb|ADI30058.1| putative DNA repair protein [Methylotenera sp. 301]
          Length = 915

 Score =  193 bits (491), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 109/700 (15%), Positives = 205/700 (29%), Gaps = 94/700 (13%)

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRVKLELTRFGIN---- 412
            +V    A +   E  +     +  L EN K + A+I+      RR   +L     +    
Sbjct: 220  EVKHFAAVDANSECRAAVAWAKQKLTENPKAQLAIISPALGSIRRELADLLDDTFHSETL 279

Query: 413  ----------IDISAGIPLSTTLHSSILTSLLNAIFKLND--FMAIATLVKHPLAKFGFP 460
                       D S G+ L+          LL       D  F  +  L++         
Sbjct: 280  HSSLYETPRCYDFSLGLALTEYAIVHSALQLLRLAASKADLIFDEVTPLLQDVYWGSQQE 339

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                  A+  L+    R    SY +  L                +    +++S       
Sbjct: 340  ----LDARAQLDAHLRRNMSASYHLESLIKQASKLQTNGILLDELLENLTQIS------- 388

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
                             +           +S W    V  L  +   + R L +  F+ +
Sbjct: 389  -----------------RFQNQQGKQRQVLSAWVTDFVQLLDELHWAKTRSLSSHEFQTQ 431

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
               L  L             +A   +  IT L +    + + +    + ILG LE+  + 
Sbjct: 432  QAFLKCLKELSSLDAIFGNVSASAAVQKITELCNATMFQSEAKGDIRIQILGLLETPAVQ 491

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK---TAEKYIGQAAHDFEMANGTRHL 697
             D +    +N+  WP     NP L   +Q +        A +    +     +      +
Sbjct: 492  LDAVWALNMNDQHWPPAVKLNPLLPADLQRNRGTPNASAAVQSQFASLVHQRLMTCAPEV 551

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
            I++ + +E+      S  L+    L        L +R          L            
Sbjct: 552  IFSYATKEDERELRPSPLLEIQSDLQTPSTIQTLTER----------LAQPASLQFLDDF 601

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
                 L  +      +        P   + +  L    +       D   RG+L H ++ 
Sbjct: 602  IAPAVLPDENIRGGVNLFAAQAKCPAWAFYQYRLGAAKLETPVDGLDTMSRGSLLHKVLQ 661

Query: 818  ELIKK------RINKNTPEINHLMKQIIDSHFEKENL------PPHIDIIWRHLFHKISH 865
                             P +N  +   I+   +  +       PP +  I R+  H++  
Sbjct: 662  LFWLDCETLSNLKALFPPLLNEKIDTAIEKSIQALSDEINYHIPPQVLQIERNRLHQLMQ 721

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP- 924
            ++L  E +  +           ++ +E + ++L+   DRID L  G + + DYKT     
Sbjct: 722  AWLTLELER-ADFVVDACEKKFELDVEGLKLNLS--IDRIDKLAEGGLVVIDYKTSAAVS 778

Query: 925  -KKETAQKLIDPQLSLEAAALK------AGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
                   ++ +PQL +            A SF++I   +     +I L  +  +      
Sbjct: 779  NSSWAEDRISEPQLPIYVVLALKYEQVVAVSFAKIRSDETK---FIGLSAERDVLPKVTA 835

Query: 978  KKKY----------SADELSEKSLKNLIEIVTLLQNGEQP 1007
              K             D L E    +L  I   ++ G   
Sbjct: 836  LAKVRENSAFYGFGDWDALLEHWYTSLTNIAQEIKAGVAG 875


>gi|331087019|ref|ZP_08336094.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
            9_1_43BFAA]
 gi|330409469|gb|EGG88912.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
            9_1_43BFAA]
          Length = 1136

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/964 (11%), Positives = 265/964 (27%), Gaps = 129/964 (13%)

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
            R + L  +       L         E  L +  S    +     +  +I      +   E
Sbjct: 82   RRIVLDDI----GKSLLLRKAAGDMEGELKVLGSNIRRLGYISEVKSVISEFTQYDVGAE 137

Query: 168  DLHALKNEKYGM---WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
            +L  +          +W      ++   + + E L            + +  A  +    
Sbjct: 138  ELERVMESGEIGPQLYWK--LHDIQKLQEKFGEYL--QGKYITGEELLDVFSAVVQQSEI 193

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                 +++ G TG  P   R++  +        V   +D                     
Sbjct: 194  LKDSVVVLDGFTGFTPVQNRVLGQLLKICRKVTVTVTIDQREDPYQLK------------ 241

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                  +  ++L+K +    +   + + +          +          +         
Sbjct: 242  ----HKYQLFTLSKQMVTGLVHIAEEENIEVEPPVQLYGNRGEVPVRFRENLPLAFLEQN 297

Query: 345  LENKIPNIQKCFSD-VALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLA 399
            L      +     D ++L    N +EE++ I   +   +          + +++     A
Sbjct: 298  LFRYTKRVYDNKQDMLSLHAVKNPKEESVFIVSEILRLVRTKGYRYRDMAVIVSDMETYA 357

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
              ++      G+   +     +        L SLL  I +   + +    ++  L  F  
Sbjct: 358  EYMERAFRICGVPFFMDHKRSVLLNSFVEYLRSLLAMIDENFSYESTFRFLRTNLTGFTR 417

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
             E         +  + +RG K   ++         R +   +   +  W +   ++  E 
Sbjct: 418  EEVDDVENY--VVALGIRGYKKWKEMW-------VRQSPHADAEDMLRW-NAFRQKFIEK 467

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
               L + +      +        +        +  +  +   +    +  + +    + +
Sbjct: 468  LERLTEVLKCRKKTVREVTEAIYAFLVQ----EEMQQKIGIYEVQFQERGQLVLAKEYAQ 523

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
              + +  LF K  E     + +  E+ +++   +    V         + +     +RL 
Sbjct: 524  IYRIVLELFDKFTELLGEEQISLGEYRELLDAGLQEAKVGVIPPGIDQVVVGDIERTRLQ 583

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG 693
            +   L L G+N+   P        LS   +             A++          +   
Sbjct: 584  DVKVLFLAGVNDTWLPGKQGAGGLLSEYDRERFQEQKVALAPGAKEQAYIQKFYLYLHLT 643

Query: 694  --TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKR---------------- 734
              + +L  T S           +  +  L  +      +  + R                
Sbjct: 644  KPSEYLYLTFSKISSEGKSLRPAYLIADLKRMYPELLVEEEEDRPFWEKELTPETALPYL 703

Query: 735  -----------GQCY----------LDWTRKLDYTTKQPHYKRP------KPFPPLEAQP 767
                       G  +            W  +++      H KRP      +    L    
Sbjct: 704  VEGLQVRSETFGGAWKELYTWYRKHPKWHAQMEQLLAANHLKRPHDQLSEEVARKLYGTI 763

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK- 826
               S + +++     YA +    +KL+            D G +FH+ + +  KK     
Sbjct: 764  LENSVTRLEKFSACAYAHFLTYGMKLEER--TVYGFKPVDLGNIFHSAMEQFSKKLEEHQ 821

Query: 827  --NTPEINHLMKQIIDSHFEKEN--------LPPHIDIIWRHLFHKISHS--FLEHEEKI 874
               T     L +Q+I+   E                +        ++     +   ++  
Sbjct: 822  VTWTTVSEELREQLIEESVEAGVTNYGNAVLYSSSRNEYVITRMKRLLRRTVWALTKQLE 881

Query: 875  QSSIEKIFVNIPAK---------MAI-ESIGIHLTGFADRIDLLKSGFVD---ITDYKTG 921
            +         I            +++ E   + L G  DR+DL +        + DYKTG
Sbjct: 882  KGDFVPAGYEISFGNLAHLESVNLSLSEHARMRLRGKIDRVDLYEDEEHVYVKVIDYKTG 941

Query: 922  -DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQKFKIDCITNDK 978
                +       +  QL +   A+      +   ++   A +FY ++K  F    +  + 
Sbjct: 942  AKAFQLGEMYHGLQLQLIVYLNAVMEMEEQKHPEKEIVPAGIFYYQMKDPFVEKEVRENL 1001

Query: 979  KKYS 982
             + +
Sbjct: 1002 GEKA 1005


>gi|256825725|ref|YP_003149685.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689118|gb|ACV06920.1| DNA/RNA helicase, superfamily I [Kytococcus sedentarius DSM 20547]
          Length = 1083

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 116/1026 (11%), Positives = 261/1026 (25%), Gaps = 74/1026 (7%)

Query: 27   NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86
            +  +VE           L+ V +  PT+     LR    E     +T +P + S      
Sbjct: 31   STRVVEEVVAHLEAGGDLSQVLVLTPTRLTATMLRERLEERWPHATTGMP-VHSHQAFGF 89

Query: 87   EKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                    L+    P + +   +   LA L+              +PE+      +    
Sbjct: 90   AVLGHHARLTDAPAPTLLTGADQDAVLAELLASAAQDDAAADAAGWPEA----VRAALGT 145

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYG----MWWLLAADFLKIASKYW---TER 198
                  + D+            +L    + +        W  A   ++   +     ++ 
Sbjct: 146  QGFRDQVRDLFMRAVEHGVTAGELAEFDDRQGPDGTPGLWRAAGRLMREYEQVTALSSQA 205

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             V+          + ++  E      G    +++  +      T  LM  +A     A  
Sbjct: 206  AVDAAWVVAAAADLLVVDDEVAEDAAGRLQLVLVDDAQELTAGTLALMDALARRTPRARW 265

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
            +   D       +      +    + +      P     +    L      +        
Sbjct: 266  VLAGDPDAAVQGFRGARPGAFLEWARDGVSEVLP--CSHRHGPALRAVAGRIAERIGAHG 323

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
              + R    +            +       +        + A +   +   E   ++  L
Sbjct: 324  VEHRRPGPRADGEGSGGPGVAPSEAGDGPGVAGGSVRPEEAAALVFPSVHAELSHVSTVL 383

Query: 379  RMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLHSSILTSLL 434
            R             A++   R    +V+  L R G+ + +S G  P++     + L  L+
Sbjct: 384  RREHVLAGVPWGRMAVVARGRGRTEQVRRALERAGVPVQVSGGGQPVTGQPVVATLLDLV 443

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
             A   L      A   +   +     ++ ++    +      + +      +        
Sbjct: 444  VAALDLARLRPGAFAGQGAGSAAVVDQERITGWLTSPVGGLDQTSVRRLRRVLRAEAGAP 503

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               T                E +      +  +   +   V          G     D  
Sbjct: 504  TGVTSGELLEQAVLDPAHPWERRGAETGALRRLATALHAGVAAARRTPDGRGWALGVDAE 563

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK--------ANAIEWI 606
             +       + L    +   L     G+        ++   +  +        A    ++
Sbjct: 564  TVLWAVWDGLGLASGWQRQALAGGVAGRRADRELDAVLGLFAAAEQFVERRPGAGPDVFV 623

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            D +              +   + +L    +    ++ + + G+  GVWP    +   +  
Sbjct: 624  DWMRSSQVARDSLVLGRQRDAVQVLTPQTAAGHEWEVVSVVGVQAGVWPDLRLRGSLVGS 683

Query: 667  VMQSDL--------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
                DL          + A     +              +   ++R+      A   L  
Sbjct: 684  SRLVDLVEGRAATVADELASVRHDETRQFLVACTRATRCLLVTAVRDTEESPSALLNLVE 743

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYT-----------TKQPHYKRPKPFPPLEAQP 767
             L  G  +      +                             P   R  P        
Sbjct: 744  PLPDGAEERPWAPWEPPLDLRHQVALARRELLAAAGADTGEDSAPGEHRIDPGARAAWAA 803

Query: 768  RTYSFSEIKQLINDPYAVYARRI---LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
               +    +     P   +A R     +  +          +  GT     +   +    
Sbjct: 804  ELAALVRSEVPRAHPEQWWALRQVTSARAPWPADTVPSVRPSALGTYQDCALRWFLSTHG 863

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPP---------------HIDIIWRHLFHK--ISHSF 867
                P  +  +  ++     +    P                   +W     +  ++   
Sbjct: 864  GSTPPGRSQELGILLHDLLAERPEDPVPALAAEAERRWAELGSPEVWWSRRERERMAEWL 923

Query: 868  LEHEEKIQSSIEK-IFVNIPAKMAIESIGIHLTGFADRIDLLK-SGFVDITDYKTGDNPK 925
              +E   + S  + +   +P  +A+E+ G+ L G  DR++    SG + + D KTG    
Sbjct: 924  RRYEIYRRESGRELVGTELP--LAVEAEGVRLAGRVDRLERHPSSGALHVADLKTGFVGP 981

Query: 926  KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE 985
                    +PQL     A+ AG+F Q           ++L    +I  I   +      E
Sbjct: 982  PSEL--PGNPQLGAYQVAVAAGAFEQ--GTVAGGASLVQLDSGERIGTIDRRQPPLDEGE 1037

Query: 986  LSEKSL 991
            +  +  
Sbjct: 1038 VDHRER 1043


>gi|256821958|ref|YP_003145921.1| hypothetical protein Kkor_0733 [Kangiella koreensis DSM 16069]
 gi|256795497|gb|ACV26153.1| conserved hypothetical protein [Kangiella koreensis DSM 16069]
          Length = 913

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 103/720 (14%), Positives = 233/720 (32%), Gaps = 93/720 (12%)

Query: 360  ALIEADNEREEAISIAIALRM----SLDENKKK---SALITADRN---------LARRVK 403
             ++  ++ REE  +     R     +L +N  +    A++  +           L + + 
Sbjct: 217  QVLSFNSMREEFKTAIHQARDSVIKALKDNPDQPFRCAIVVPELEKHKALIERLLWQELT 276

Query: 404  LELTRFGINI----DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
              L      +    DIS G  L+         +LL  +    +   +  L+  P      
Sbjct: 277  PSLEPEQQPVVGIYDISLGESLNRQPLVVTALNLLKFLNGSIEAQVLQQLLLSPYF---- 332

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                                K          L+ DR   +K        +  +S E  +L
Sbjct: 333  -------------------GKPKASGTGHDQLLSDRARLEKFLRKSHKQRFAIS-ELSDL 372

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
            A             + +  + +      L+++DW K   + L        R L +  ++ 
Sbjct: 373  AQQAKITSSSFADLIESLSSAQQLVKTKLTLADWVKRLTSILDAAEWPGMRTLQSREYQ- 431

Query: 580  EGKTLSSLFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
              +TL   F+++ +         +    ++++++LI  +    ++ K+  + ++G LE+ 
Sbjct: 432  VQQTLYDCFNQLRQFQVFYPEVISFSSLLELLSQLIAEKQFHQELPKAP-IQVMGLLETL 490

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANGT- 694
             L FD L L G    V P     NPF+ +       +   +A++    A   F     + 
Sbjct: 491  GLEFDQLWLTGATYQVLPAQPNPNPFIDKQTLKQHQMPGSSAQREYEYAQQLFNSLLASG 550

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
              +  +    + +   + S ++                      ++ +R+ D        
Sbjct: 551  DDVTVSYPRFDGSSELLPSPFIAEFPEQTIAANARLAPDFINQIVESSRREDSVESY--- 607

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
             +     PL            +  IN P+  Y    LK+      ++  +  +RG+L H 
Sbjct: 608  -QDTHGQPLATGVVKGGTGFFRDQINCPFKAYMSYRLKVKEFEEVEQGLNAMERGSLVHT 666

Query: 815  IITELIKKR------INKNTPEINHLMKQIIDSHFEKEN------LPPHIDIIWRHLFHK 862
            ++    K+        +K+  +++ L++  + S  ++ +                    K
Sbjct: 667  VLEAFWKEHDSNEILTDKSESQLSSLIEPYLASVLDEYSEQFYYLQLADFADNEFQRLLK 726

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
                 L+ + K       +       + IE +  +L    DRID ++ G + I DYKTG 
Sbjct: 727  QLVEALQVDAKRLP-FTSLPPEQDQSITIEGLTFNL--KVDRIDEVEDG-LLIIDYKTGT 782

Query: 923  NPKKE-----TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF-------K 970
              + +           +PQL+L A             + +A + +  +  K         
Sbjct: 783  PTRAKLYPKNKELAPEEPQLALYAI--------NQGDKPIAGVSFFNINAKEVRYQGVAD 834

Query: 971  IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
                    K+ +  E     ++     ++ +    +   + +    ++    ++    R+
Sbjct: 835  TIENLALDKRSAIKEPMSDIIERWQLQMSEVARDIKAGTAIVDP--RNCDYCDFASACRI 892


>gi|303326805|ref|ZP_07357247.1| RecB family exonuclease [Desulfovibrio sp. 3_1_syn3]
 gi|302862793|gb|EFL85725.1| RecB family exonuclease [Desulfovibrio sp. 3_1_syn3]
          Length = 997

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 137/1082 (12%), Positives = 299/1082 (27%), Gaps = 177/1082 (16%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
                PF  ++   L + +   +            S  + VP  R  + L   + +   +K
Sbjct: 26   PWQRPFLPDLKAVLEDCSGGRS-----------GSALLIVPHNRPWRYLLQLYAKE--RK 72

Query: 72   STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
              +LP + +L D+V+        +  +     + + R+  L   +            D  
Sbjct: 73   PRLLPKVLTLADMVKVWRAGTSDVPLHTA---NMLDRVALLHGCVQNLTE-------DDA 122

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
              S     +  A  +     LA +++ +  +  +  DL      +           L   
Sbjct: 123  ALSARFARMDMALFLPWGLRLAALLEEMLGQGLETADLAY-VENEVAAPAAALLGALGRI 181

Query: 192  SKYWTERLVELNASSPVGYQ---IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
             + +   L E   ++P   Q             L+ G + P+++AG +        L+ +
Sbjct: 182  GRAYLAALNERRWTTPGLDQYMASRQASHIPPLLVPGAERPVLVAGFSVLSGTEDVLLRS 241

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +     GA +    D                    ++   + H     A  L     + +
Sbjct: 242  LWRA--GAHICLHTDP------------ALAGNEPAHWACAEH-----AAWLRRWQARAK 282

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                   +      R                                   ++     +  
Sbjct: 283  PAVEPAALEAAHKPR-----------------------------------LSFFAGYDCH 307

Query: 369  EEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
             +  ++   L      N +   +A++  D  L   V   L     ++++S G PL+ +  
Sbjct: 308  SQLQAMRDTLEKDTKTNGRMPSTAVLLTDSALLMPVLHHLP--DKDVNVSMGYPLTRSPL 365

Query: 427  SSILTSLLNAIFKL-----NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            + +L +LL             +  +   ++HP                    +     + 
Sbjct: 366  NRLLDALLRLQEGRSEDGRYYWRTLLQCLRHPYLNMLR--------------IEDESGRT 411

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
             +    L+ L        +            +     L  LL   +   +  L   ++ +
Sbjct: 412  LFLRDALRRLEALVRTGNRFVDPAALADECRAALPAPLDTLLSQCLAITVEALSAARSTE 471

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
            +       I D+       +      +   +  L          +  ++           
Sbjct: 472  DIAECLHGICDFLLAYGGDMWRHFPLDAEAMFRLMRHAAPILRETCLAQT-------PFP 524

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                  I  ++++ E V  + E  + L +LG LE+RLL+F+ +++    +   P N A++
Sbjct: 525  PAVLHGITRQVLEQERVPFEAEPLTGLQVLGMLETRLLHFERVLIVDATDDKLPGNPAQD 584

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLREN-----NIPTIASRW 715
            P L   ++  L L  A +    AAH           + +            +     SR+
Sbjct: 585  PLLPDSLRQVLGLPDARRRERTAAHTLYRLCAGAEEVHFFWQEGITRSALFDGKKSRSRF 644

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR----TYS 771
            +++L+          L   G+  L   R     ++      P+      A         S
Sbjct: 645  VEQLIWE-EEQRRGALLTPGEEPLAGARCTVRASQVLPKSLPRGAGLDTALQHLLREPLS 703

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNT 828
             + +   +  P     + + +L       +  D    G   HN +  L +  ++   +  
Sbjct: 704  TTRLDVYLQCPLRFAWQYLCRLAPQREINEGDDPAAVGICIHNTLRALYEPYLHKEVRRG 763

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIP- 886
                  ++       E  +L   +      +    +   LE     Q      + +    
Sbjct: 764  DISMETVRARFYEALEAADLRRILPADSCLMLETAAPLRLERFLARQPESALILALEEKL 823

Query: 887  -AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-----------------------D 922
               + +       TG  DR+D    G + + DYKTG                        
Sbjct: 824  NVDLDLNGQRYAFTGTLDRLDRR-DGLLYVLDYKTGTIKRHDGSLWTDAPFFERVAQACS 882

Query: 923  NPKKET----------------AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
             P  +                  Q+L   QL    + +KA      +     +   + LK
Sbjct: 883  APGIKAQTAMGEDRMSALFEELRQRLPSLQLPCYLSMIKAK-----NMGAPGDAALVELK 937

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026
            +      +     +            +L  +V         F +      +      Y  
Sbjct: 938  EDGAEIPLFGGLAEEDLTAALAYCDLSL-ALVLRHLESAPHFAARPD---RHCAWCPYAG 993

Query: 1027 LA 1028
            L 
Sbjct: 994  LC 995


>gi|254853389|ref|ZP_05242737.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503]
 gi|300763921|ref|ZP_07073917.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes FSL N1-017]
 gi|258606757|gb|EEW19365.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503]
 gi|300515262|gb|EFK42313.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes FSL N1-017]
          Length = 1157

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 124/965 (12%), Positives = 278/965 (28%), Gaps = 124/965 (12%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L     L +     +       LA++   ++ EE   ED+                  
Sbjct: 97   AALDQRDKLKIFSRATSRKGFYAELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKIHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + I  + + E L   +        + L+  +        +  I+I G T        ++ 
Sbjct: 156  ISIIYQKYEELLA--DKFLENEDYLRLLAEKITESDYLNQTEIVIDGFTSFSQQELTVIG 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   V   L+      I + + E S    S+         Y+L +L     I  
Sbjct: 214  ALMRKCDKVTVSLALNV---PEIKHGLDEYSMFKASTEAY------YALLELAKLNSINV 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K               ++ ++        +                 ++++ +A+N 
Sbjct: 265  EEDKFFLENKRAKTESLAFLANAWGHNKFMAFKEE-------------PHNLSVHQANNR 311

Query: 368  REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   +A  +R       +    A++T +  +     +  +  + I I I     +S  
Sbjct: 312  RAEIEGVAREIRQLTLNGYRYQDMAILTRNLGDYDVLCETVMESYNIPIFIDKKRAMSKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         +  + R   + LE   L     + 
Sbjct: 372  PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLRRKADILENYVLENGIQNK 431

Query: 484  DIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNK 541
               + +   +  +I     N      +   ++        L+ + L  +   L   KT  
Sbjct: 432  WKWEKEGDWIYRKIRGLSTNVLPQTDEEIQTQSIINEMRSLIVNPLSTLELNLKKAKTGM 491

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599
                      +               E +    L    E+    +S+L  + +E      
Sbjct: 492  EFALALYHFLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSAISALLDEFVEVLGEET 551

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   +++II   +D             + +     ++LL+   +   G+N+GV P    
Sbjct: 552  LDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611

Query: 660  KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI 711
             N  LS   +  L         +A+  IG+            +  L  +    +     +
Sbjct: 612  DNGILSDQDRDALRAEVSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671

Query: 712  -----------------ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                              S +L    +L   +    ++ +       T +L    +    
Sbjct: 672  SESNYLRKIKGQFKKLSESVYLTDPGLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPL 731

Query: 755  ------------------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778
                                                 + K    L  +    S S +++ 
Sbjct: 732  SSVWWDAYNSYFENGKESRMAKQVLSSLYYENKTKPLQEKTAKNLFGETIHASVSRMEKF 791

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829
             +  +  +A+  LKL+   HF+      D G +FH  +  +  +    N           
Sbjct: 792  FSCEFQHFAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGSLTDQEC 849

Query: 830  -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885
             ++  L    +    + E L         ++   +I      + +E+   S+   + + +
Sbjct: 850  RQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909

Query: 886  PAKMAIESIGIHLT----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQK 931
               +  +   + ++          G  DRID+ +      + I DYK+  +         
Sbjct: 910  DFGLKGDIPPLKISLQANSELLLQGRIDRIDMAEQEDRTFLRIIDYKSSSHDLALTEVYY 969

Query: 932  LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  Q+      +   +   I    + A + Y  +  ++         +  + +      
Sbjct: 970  GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKNSK 1029

Query: 991  LKNLI 995
            +K LI
Sbjct: 1030 MKGLI 1034


>gi|294497407|ref|YP_003561107.1| ATP-dependent nuclease subunit B [Bacillus megaterium QM B1551]
 gi|294347344|gb|ADE67673.1| ATP-dependent nuclease, subunit B [Bacillus megaterium QM B1551]
          Length = 1166

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 116/969 (11%), Positives = 246/969 (25%), Gaps = 136/969 (14%)

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADF 187
            + +  L L  + +      + L  ++   +        L  +K +               
Sbjct: 102  HQKEELRLFANSSEQAGFIEELEKMVKEFKQYTVDAPSLEEMKKKLQAEDEKVLADKLHD 161

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            L +      ++L+           + L+  +        +  I + G     P    ++ 
Sbjct: 162  LHLIYGELEKQLMTKYVD--GEDYLKLLSEKVASSAYLAQATIYVDGFHHYTPQELTVLV 219

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +        +    D      I N +        +            L  L     I+ 
Sbjct: 220  ELMKVCREVKIAVTSDYSYQDFIPNDLHLFRLTSETYQE---------LMGLAAENGIEI 270

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            ++                                    E   P  Q    ++ L+ A + 
Sbjct: 271  QEPIVFNEQKR------------HQNSPELAYLERYYDERPTPEFQSEPENIQLLPAVSR 318

Query: 368  REEAISIAIALRMSLDENK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLST 423
            R E   IA  +   + +     +  ALI  +  +    ++     + I   I     +  
Sbjct: 319  RAEVEGIAREVLSLVRDRGYRYRDIALIVRNAEDYHDLLQTIFRDYEIPYFIDQKRAMFH 378

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK-NALELVALRGNKNS 482
                  + S+L  +     +  I   VK  L      + +  R + + LE   L      
Sbjct: 379  HPLVEFVRSVLEVVSGSWRYETIFRAVKTDLLFPLSSDVHQLREEMDELENYVLAYGIQG 438

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                  +     +  + ++       +    E+       ++   +  +      K  K 
Sbjct: 439  SKWTSKEPFTYRKYRSLEDMNLGKTDEELAFEQKINELKNMIVPPIYSLQQ--KLKQGKI 496

Query: 543  STCGNLSISDWTKLT-----VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                  ++  +         +  L+N C +E +       E+  K +  LF + +E    
Sbjct: 497  GKEKAEALYRFLTNLDIPQKIEALRNRCEEEGKLQEAREHEQVWKAILHLFDQFVEMMGE 556

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
             K +   + D+    +D             + +     SRL +     + G+N+GV P  
Sbjct: 557  EKVSISLFADLFETGLDSMQFALVPPALDQVVVASFERSRLSDIKASFVLGVNDGVIPAK 616

Query: 658  TAKNPFLSRVMQSDL---NLKT----AEKYIGQAAHDFEMANGTRH-LIYTRS-LRENNI 708
               +  LS   +  L    L       +K   +    +   + +   L  +     E   
Sbjct: 617  PKSDGLLSEKEREQLLESGLLLAPTGRQKLFDEQFLIYLALSSSSEKLYVSYPLANEEGK 676

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
              + S  + R+  L        L        +  +    T                 +  
Sbjct: 677  TLLPSLVINRVKELFPLLQEKLLMTEPTDLEEEKQVDYITNPLTSIAHLASQLQGWKRHY 736

Query: 769  TYS----------------------------------------------------FSEIK 776
              S                                                     S ++
Sbjct: 737  PMSSAWWDVYNFYVENPDWNSYSEKVLSSLFYQNEAKRLTKKTSQRLYGKHIQASVSRME 796

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII----------TELIKKRINK 826
            +    PYA +A   LKL     F       D G LFH  +           +  K    K
Sbjct: 797  KFEACPYAHFASHGLKLKERKVF--KLAAPDIGELFHAALKMISDELRGGQKEWKNLTRK 854

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKISHS--FLEHEEKIQSSIEKIFV 883
            +  +++      +    + E L       +  H   +I      +  E    S    + +
Sbjct: 855  DCQQLSTAAVHELAPRLQNEILLSSNRHHYLTHKLQQIIERASLVLSEHAKMSGFVPVGL 914

Query: 884  NIPA--KMAIE--------SIGIHLTGFADRIDLLKSGF---VDITDYKTG-DNPKKETA 929
             +       +            + L G  DR+D  +S     + I DYK+          
Sbjct: 915  ELGFGPSAELPSMQFTLPNGHTMELVGRIDRVDKAESSKGLLLRIVDYKSSDKALNLVEV 974

Query: 930  QKLIDPQLSLEAAAL---KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
               +  Q+      +                A + Y  +      + + N  K    D++
Sbjct: 975  YYGLSLQILAYLDIVVTYAEQLLHDNRGALPAGVLYFHV-----HNPMINSTKALQPDQI 1029

Query: 987  SEKSLKNLI 995
              +  K   
Sbjct: 1030 EAEIFKKFK 1038


>gi|254931620|ref|ZP_05264979.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262]
 gi|293583173|gb|EFF95205.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262]
          Length = 1157

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 124/965 (12%), Positives = 278/965 (28%), Gaps = 124/965 (12%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L     L +     +       LA++   ++ EE   ED+                  
Sbjct: 97   AALDQRDKLKIFSRATSRKGFYAELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKIHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + I  + + E L   +        + L+  +        +  I+I G T        ++ 
Sbjct: 156  ISIIYQKYEELLA--DKFLENEDYLRLLAEKITESDYLNQTEIVIDGFTSFSQQELTVIG 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   V   L+      I + + E S    S+         Y+L +L     I  
Sbjct: 214  ALMRKCDKVTVSLALNV---PEIKHGLDEYSMFKASTEAY------YALLELAKLNGINV 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K               ++ ++        +                 ++++ +A+N 
Sbjct: 265  EEDKFFLENKRAKTESLAFLANAWGHNKFMAFKEE-------------PHNLSVHQANNR 311

Query: 368  REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   +A  +R       +    A++T +  +     +  +  + I I I     +S  
Sbjct: 312  RAEIEGVAREIRQLTLNGYRYQDMAILTRNLGDYDVLCETVMESYNIPIFIDKKRAMSKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         +  + R   + LE   L     + 
Sbjct: 372  PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLRRKADILENYVLENGIQNK 431

Query: 484  DIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNK 541
               + +   +  +I     N      +   ++        L+ + L  +   L   KT  
Sbjct: 432  WKWEKEGDWIYRKIRGLSTNVLPQTDEEIQTQSIINEMRSLIVNPLSTLELNLKKAKTGM 491

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599
                      +               E +    L    E+    +S+L  + +E      
Sbjct: 492  EFALALYHFLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSAISALLDEFVEVLGEET 551

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   +++II   +D             + +     ++LL+   +   G+N+GV P    
Sbjct: 552  LDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611

Query: 660  KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI 711
             N  LS   +  L         +A+  IG+            +  L  +    +     +
Sbjct: 612  DNGILSDQDRDALRAEVSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671

Query: 712  -----------------ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                              S +L    +L   +    ++ +       T +L    +    
Sbjct: 672  SESNYLRKIKGQFKKLSESVYLTDPGLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPL 731

Query: 755  ------------------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778
                                                 + K    L  +    S S +++ 
Sbjct: 732  SSVWWDAYNSYFENGKESRMAKQVLSSLYYENKTKPLQEKTAKNLFGETIHASVSRMEKF 791

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829
             +  +  +A+  LKL+   HF+      D G +FH  +  +  +    N           
Sbjct: 792  FSCEFQHFAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGSLTDQEC 849

Query: 830  -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885
             ++  L    +    + E L         ++   +I      + +E+   S+   + + +
Sbjct: 850  RQMAKLTMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909

Query: 886  PAKMAIESIGIHLT----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQK 931
               +  +   + ++          G  DRID+ +      + I DYK+  +         
Sbjct: 910  DFGLKGDIPPLKISLQANSELLLQGRIDRIDMAEQEDRTFLRIIDYKSSSHDLALTEVYY 969

Query: 932  LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  Q+      +   +   I    + A + Y  +  ++         +  + +      
Sbjct: 970  GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKNSK 1029

Query: 991  LKNLI 995
            +K LI
Sbjct: 1030 MKGLI 1034


>gi|227505537|ref|ZP_03935586.1| superfamily I DNA and RNA helicase [Corynebacterium striatum ATCC
            6940]
 gi|227197834|gb|EEI77882.1| superfamily I DNA and RNA helicase [Corynebacterium striatum ATCC
            6940]
          Length = 1069

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 117/1038 (11%), Positives = 257/1038 (24%), Gaps = 143/1038 (13%)

Query: 46   SVTIYVPTKRAIQEL----RSEFIEITGKKST------------ILPIIKSLGDVVEEKF 89
             V     T++A Q+L    R + I++                  I P + +      + +
Sbjct: 69   KVLGLTFTRKAAQQLEQRIRKQLIKLRDSGIVQPGTAAAEALENIAPKVAT-----YDSY 123

Query: 90   TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
              DL+  Y L  PV    R++  A    I  + + +    L     L             
Sbjct: 124  AGDLVREYGLLMPVEPTARIITDAERYAIAHDVVVNYGGKLSASQSLGHV---------T 174

Query: 150  KNLADIIDIIETEEKKWEDLHALKN-------------EKYGMWWLLAADFLK------- 189
              L  +   ++      +++                  +    +     +FL        
Sbjct: 175  DTLLKLAQAMDNGLLDPDEIREHARIFTATAYDLEKTSKNGPEFAKEVQNFLNKQQLRVE 234

Query: 190  --IASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPAT 242
                 +   E        +              H             +++     +  A 
Sbjct: 235  YLPLVEALKEEQAARGVITFGEQMAIAAALAESHPQVGEQQSQRFNVVMLDEYQDTSHAQ 294

Query: 243  ARLMSTV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
              L+ ++      G  V    D       W   T ++      +   +        +L  
Sbjct: 295  RVLLRSLFGGVRPGVSVTAVGDPMQSIYGWRGATAENLAAFVEDFPQADGSPAPKDQLTI 354

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                                 +++ ++        ++      ++   P       +V L
Sbjct: 355  SWR---------------NPQQTLTLANDVAGHLFAETGGPRPVDELSPRDNAPEGEVKL 399

Query: 362  IEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGINIDISA 417
                +E EE   +A  L+  LD  ++     +A++      +  +   L   G+  +I  
Sbjct: 400  AYFASENEEREFVANHLKSQLDACEEPSRFSAAVLVRTNKQSPLISQALDAVGVPNEIVG 459

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
               L        L ++   + +  D  A   ++  P+   G  +     A+      A  
Sbjct: 460  LGGLLWQPEIQDLIAVATILLRPQDTNAALRVLTGPMCGLGVKDLKELLARQRNLAGASD 519

Query: 478  --GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                +  ++  D    +  ++A               +  D           L  +  L 
Sbjct: 520  ESAGRLRWEGGDPVEHLAAQLAELTKEDTSQVLGLADALADLGERERYSAAGLARMEELS 579

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                +  +   + S+SD             +   R       +  G T    F+ I+   
Sbjct: 580  AKLRHLRTYSLSKSLSDL------FADIEAMFNIRTEVLANGQLGGTTHLDTFADIVAGF 633

Query: 596  SCIKA-NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                    ++++ +     DG T          + I+   +S+ L +  + +   +   +
Sbjct: 634  HGDSLGALLDYLSMAREHEDGLTPGEVPAVDGRVQIMTVHKSKGLEWKHVCVLHADSSSY 693

Query: 655  PKNTAKNPFLSR----------------------VMQSDLNLKTAEKYIGQAAHDFEMAN 692
                     L                                   +    +AA  F +A 
Sbjct: 694  KAQAETFLTLVEKAPTDADVIELEPDAVKRSAFGKACEAYKESVRQNQREEAARLFYVAM 753

Query: 693  GTRHLIYT-----RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                   T      + +          +L+ L                    +    L  
Sbjct: 754  TRTESTLTVTGSGTNRKGGKAQKGPYEYLELLREKHSDLVSHWDVPATPEEAEALTTLRE 813

Query: 748  TTKQPHYKRPKPFP--------------PLEAQPRTYSFSEIKQLINDPYAVYARRIL-- 791
             T       P                      +       E   LI +  A+ A  +   
Sbjct: 814  GTFPSLRANPDALRGADLVLDAMEELPTLRAGETFELWEQEAGALIEEYAALKAPVVDVE 873

Query: 792  ---KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
               +L          D           +         + T     L ++        EN 
Sbjct: 874  LPTELTASDMVSLSSDPIQFARRQRRPVPFKPNAYAKRGTAFHAWLEERFGSPALLSENE 933

Query: 849  PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908
             P  D         +  +FL      +      +V  P ++ +      + G  D +   
Sbjct: 934  LPGSDEQPEQDLESLKDAFLNSPWAQR---TPEYVEAPFEITVGES--VVRGRMDAVFRE 988

Query: 909  KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
              G   I D+KTG  P     +   + QL++ A A +      +   +     +  ++  
Sbjct: 989  ADGTWLIVDWKTGRPPAGAAMRAA-EIQLAVYAEAWRR-----VHKAENVRAAFFYVRDG 1042

Query: 969  FKIDCITNDKKKYSADEL 986
            +  +       K   + L
Sbjct: 1043 YFFEPRNLPTGKELVELL 1060


>gi|167748813|ref|ZP_02420940.1| hypothetical protein ANACAC_03587 [Anaerostipes caccae DSM 14662]
 gi|167651783|gb|EDR95912.1| hypothetical protein ANACAC_03587 [Anaerostipes caccae DSM 14662]
          Length = 1117

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/917 (10%), Positives = 235/917 (25%), Gaps = 120/917 (13%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNAS 205
                +          +   E L       +      L    + +  + + + + +    
Sbjct: 117 GFIDEMKSFFAETYQYDVSLEKLKEAVKSFENTDSLTLKMKDIVLVLEKFEDYMKDRYLV 176

Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                 + ++  +     K     I I G TG  P   +++  +  +    +    +D  
Sbjct: 177 --SEQLLDVLAQKITESEKLKGATIYIDGFTGFTPIQNKVLKKLLPYAKKIVAAFTIDEK 234

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +      +                 L ++     +       L   +        
Sbjct: 235 RAGGPYRDYELFAMPKKEI---------SQLKEMAVRQGVPILPDVILHPNAAGSKELRH 285

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
           +    F  P                  +    D+ +    N +EE+  I   +   + + 
Sbjct: 286 LEQNLFRYPFHV--------------YRGKTKDIRVCCLKNPKEESRYILGCIEHLVRKE 331

Query: 386 K---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
               K   ++T D    +         FGI   I     L        + S L  I    
Sbjct: 332 GYRYKDLVVLTGDMETYQPELEKCFEDFGIPCFIDGNRALRNNPCVETILSALKMIQMDF 391

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
            +  +   +K   +     E  L         +      N        +    +   Q  
Sbjct: 392 SYEMVFRYLKSGFSALEPEETDLLENFVIASGIRGYARWNRPFKSRAFTKEEMKQINQSR 451

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
            T +        E  ++  + +++ +       +T                   L +   
Sbjct: 452 ETFM-KETGPFKEGIRKRGITVLERLTHLHGFFLTLDIQGQMERKKEEFEAAGDLAMA-- 508

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                          +++    + ++  ++ E     + +  E+  ++   +   TV   
Sbjct: 509 -------------KTYDQIYGEVLNIMDQMAEILGEEELSFDEFCAVLETGLSEMTVGVI 555

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------NLK 675
                 + +     +R+     L   G+NEGV PK +     ++   + +L         
Sbjct: 556 PPGLDQVIVGDIERTRVEGVKVLFFAGINEGVVPKPSKGGGLVTDSQREELLKAGISLAP 615

Query: 676 TAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLK 732
            A        +   +A       L  T +  +++  +   S  + R+  L      D   
Sbjct: 616 GAANQAYMEQYYLYLAMSKPDEKLYLTYASMDSSGESKAPSYLIGRIEKLFPGLKKDLDL 675

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY---------------------- 770
           +    Y     +  +  K       KP   + A                           
Sbjct: 676 QETPVYSVSEARERFVEKLQELGEEKPDQEMAALYEVLNERKLVSPYLDAYFYSNEEKNL 735

Query: 771 ---------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                          S + +++     +A + +  L+L        +    D G +FH  
Sbjct: 736 DRHLTTLLYGKELENSVTRVEKFSGCAFAHFLQYGLRLRER--LVHEILPMDMGQVFHRT 793

Query: 816 ITELIKKRINKNTPEIN--HLMKQIIDSHFEKENL------PPHIDIIWRHLFHKISHS- 866
           +  + ++       +      +  +++   +++            +   +    +++   
Sbjct: 794 LQFVGQEGSWDWEDDRERDRFVDSMVERALDEDPDKKEIFESSSRNQYTKERIRRMAKRA 853

Query: 867 -FLEHEEKIQSSIEKIFVNIPAKMAI----------ESIGIHLTGFADRIDLLKSGF--- 912
            +   ++  +         +                +   +  TG  DR+D  +      
Sbjct: 854 VWAVEQQIKRGEFTPYEYELGFSADDGLSCANLSLKDGTKMKFTGVIDRVDCYEDEENLY 913

Query: 913 VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQKF 969
           + I DYK+G+           +  QL +   A+      +   ++   A +FY  +    
Sbjct: 914 LKIIDYKSGNMQFDFTKILNGLQVQLVVYMNAILELEGKKYPEKRMVPAGMFYFHVDDPV 973

Query: 970 KIDCITNDKKKYSADEL 986
                  + +      L
Sbjct: 974 IAPKTDGEPEIEVLKNL 990


>gi|254825169|ref|ZP_05230170.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194]
 gi|255519746|ref|ZP_05386983.1| ATP-dependent deoxyribonuclease (subunit B) [Listeria monocytogenes
            FSL J1-175]
 gi|293594412|gb|EFG02173.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194]
          Length = 1157

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 124/965 (12%), Positives = 279/965 (28%), Gaps = 124/965 (12%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L     L +     +       LA++   ++ EE   ED+                  
Sbjct: 97   AALDQRDKLKIFSRATSRKGFYAELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKIHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + I  + + E L   +        + L+  +        +  I+I G T        ++ 
Sbjct: 156  ISIIYQKYEELLA--DKFLENEDYLRLLAEKITESDYLNQTEIVIDGFTSFSQQELTVIG 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   V   L+      I + + E S    S+         Y+L +L     I  
Sbjct: 214  ALMRKCDKVTVSLALNV---PEIKHGLDEYSMFKASTEAY------YALLELAKLNGINV 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K               ++ ++        +                 ++++ +A+N 
Sbjct: 265  EEDKFFLENKRAKTESLAFLANAWGHNKFMAFKEE-------------PHNLSVHQANNR 311

Query: 368  REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   +A  +R       +    A++T +  +     +  +  + I I I     +S  
Sbjct: 312  RAEIEGVAREIRQLTLNGYRYQDMAILTRNLGDYDVLCETVMESYNIPIFIDKKRAMSKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         +  + R   + LE   L     + 
Sbjct: 372  PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLRRKADILENYVLENGIQNK 431

Query: 484  DIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNK 541
               + +   +  +I     N      +   ++        L+ + L  +   L   KT  
Sbjct: 432  WKWEKEGDWIYRKIRGLSTNVLPQTDEEIQTQSIINEMRSLIVNPLSTLELNLKKAKTGM 491

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599
                      +               E +    L    E+   ++S+L  + +E      
Sbjct: 492  EFALALYHFLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGKET 551

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   +++II   +D             + +     ++LL+   +   G+N+GV P    
Sbjct: 552  LDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611

Query: 660  KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI 711
             N  LS   +  L         +A+  IG+            +  L  +    +     +
Sbjct: 612  DNGILSDQDRDALRAEVSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671

Query: 712  -----------------ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                              S +L    +L   +    ++ +       T +L    +    
Sbjct: 672  SESNYLRKIKGQFKKLSESVYLTDPGLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPL 731

Query: 755  ------------------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778
                                                 + K    L  +    S S +++ 
Sbjct: 732  SSVWWDAYNSYFENGKESRMAKQVLSSLYYENKTKPLQEKTAKNLFGETIHASVSRMEKF 791

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829
             +  +  +A+  LKL+   HF+      D G +FH  +  +  +    N           
Sbjct: 792  FSCEFQHFAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGSLTDQEC 849

Query: 830  -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885
             ++  L    +    + E L         ++   +I      + +E+   S+   + + +
Sbjct: 850  RQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909

Query: 886  PAKMAIESIGIHLT----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQK 931
               +  +   + ++          G  DRID+ +      + I DYK+  +         
Sbjct: 910  DFGLKGDIPPLKISLQANSELLLQGRIDRIDMAEQEDRTFLRIIDYKSSSHDLALTEVYY 969

Query: 932  LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  Q+      +   +   I    + A + Y  +  ++         +  + +      
Sbjct: 970  GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKNSK 1029

Query: 991  LKNLI 995
            +K LI
Sbjct: 1030 MKGLI 1034


>gi|78043948|ref|YP_361000.1| exonuclease RexB [Carboxydothermus hydrogenoformans Z-2901]
 gi|123575607|sp|Q3AA34|ADDB_CARHZ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|77996063|gb|ABB14962.1| exonuclease RexB [Carboxydothermus hydrogenoformans Z-2901]
          Length = 1090

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 119/939 (12%), Positives = 238/939 (25%), Gaps = 170/939 (18%)

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
           L +    A+     ++L  +         K E+L    +E     W+L    LK     +
Sbjct: 105 LQILQKAADNPGFIEDLLKLFKEFRRYRVKPENLEKASSE--IENWMLQQK-LKDVYLLY 161

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
              L +          +      A          + I G     P    ++ T+      
Sbjct: 162 KLYLEKFGEEYTSEGLLEKFLEYAPKSKFLAGAKVFIDGFYTFTPLELEVIKTLLKTCAE 221

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             V    +              +  I           +Y  ++LL               
Sbjct: 222 VTVTLPTEYDPGIFNRLYSEALNLGIKVKELKLEKIERYRASELL--------------- 266

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC-FSDVALIEADNEREEAISI 374
                                            +P+       +++LI A N  EE    
Sbjct: 267 ------------------------HLAQNYYPLLPDPYSGSLENLSLIAAANPLEEMEKA 302

Query: 375 AIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
           A  +R               LI  D      +K     +G+ + +  G+         +L
Sbjct: 303 ARIIRYLAKFKGYKLSDILVLIPEDGYYISNIKTVFNEYGLPVYVDKGLAFDHHGLYFLL 362

Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
                 +    +  A    +K  L      E +                           
Sbjct: 363 KG----VLGEFNREAAINCLKSGLLNLTADEVFALENY---------------------- 396

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            +L R    +       W+   S           +   +    ++++             
Sbjct: 397 -LLSRGLDGEKLVLKEAWEDPNSS--------YWESWEKGFGEIISFSQILPLINTYREF 447

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
           S   K  +     + +   R++ +   E   +  ++L ++I E     + N   + + + 
Sbjct: 448 SQSLKQLL-----LKIGVPRRISDENGERFWQAFTNLLTEIEEVFGAERLNPTTFAEELL 502

Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
             +   ++K   +    +   G+          +I+ G  EG +P   A     +   ++
Sbjct: 503 AYLAKLSLKTIPKGLDQVRAGGSKRYWTGEARAVIILGAVEGKFPSPPAAGLIFTEEERA 562

Query: 671 -------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRL--- 719
                  +L+    ++      H F      R  +  +         +     L      
Sbjct: 563 KLKKVGLELSPLIRQRLKEDNFHVFLALTRARERVYVSYPRVSLTGESFTPALLVDWLKK 622

Query: 720 --LVLGGTDFFDNLKKRGQCYLDWTRK-----------------------LDYTTKQPHY 754
               L   +     +   Q       +                       L         
Sbjct: 623 AFPNLKSEEGSYGNETTPQALTRLLSREMVKVKKNGELPFIAQGAFNALLLSKPELITKI 682

Query: 755 KRPKPFPP----------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
            R     P               +T S S ++   + P   + + ++K +    F   P+
Sbjct: 683 ARAFATNPGKIKLNAGFKEFLPSKTLSVSRLETYYSCPLKYFLKYLIKAEEREIF--TPE 740

Query: 805 RTDRGTLFHNIITELIKKRINKN------TPEINHLM---------KQIIDSHFEKENLP 849
            T+ G L H  + E+IK    K         E    +         ++  +         
Sbjct: 741 ATEIGALLHGAVAEIIKTVREKGQKLSTLLAEDLKTLVYQAFTKAQQEYGEKFLATYRGR 800

Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK---------MAIESIGIHLTG 900
             ++ ++  LF  I  +    E    +        I              +      L G
Sbjct: 801 YFLNRLYLMLFKAI-EALAYFEG--FTKFTPFGEEIAFGEKERLKSPVFEVNGEKYTLAG 857

Query: 901 FADRIDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             DRID+ ++     + I DYKTG      +     I+ QL               +   
Sbjct: 858 KIDRIDVYENNGKTYLRIIDYKTGSISISLDEVVGGINLQLLTYLLVASENKELFGENLV 917

Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            A  FY R    F+   +    +  S +EL E+  KN  
Sbjct: 918 PAGAFYFR----FQNPMLDEKAEGLSMEELKEEVYKNFR 952


>gi|38233329|ref|NP_939096.1| putative helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199589|emb|CAE49245.1| Putative helicase [Corynebacterium diphtheriae]
          Length = 1076

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 113/1037 (10%), Positives = 262/1037 (25%), Gaps = 141/1037 (13%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI--LPIIKSLGD 83
            +   +V       ++P     V     T++A Q+L     +   + + I  L  +   G 
Sbjct: 46   MAARVVWLVASGLVDPD---RVLGLTFTRKAAQQLSKRIRDRLEQLAGIDNLRDLDPTGA 102

Query: 84   VV------------EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            +              + +   L+  Y L  PV    RL+    L  I  + +      L 
Sbjct: 103  LATKLEAIAPTVSTYDSYAGRLISEYGLLLPVEPSSRLISQTELFQIAHSIVSAHTGALN 162

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG------------- 178
              +  +   S          L  ++  ++       D+                      
Sbjct: 163  TSNSPNTVTST---------LISLVSEMDNHMVSPTDIEEESAAFLAMIEDVEATSKRAP 213

Query: 179  -------MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGT 226
                       +  + L    +     L + +  +         R  AE        +  
Sbjct: 214  SKEVYKWRDTQVLRNELLPLVQQLKTHLADNHLMTFGEQMSLAARLAAENPQVGASQRNR 273

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
               I++     +  A   L+ ++     G  V    D       W   T  +     ++ 
Sbjct: 274  YQIIMLDEYQDTGHAQRVLLKSLFA---GTAVTAVGDPMQSIYGWRGATAANLERFLTDF 330

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
              +  P                  K L            + ++               ++
Sbjct: 331  GSNGSP---------------ATKKELTVSFRNPPEVLDLANRVSRELLGVPEDPRRPVQ 375

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRV 402
               P        V L    +  EE   +A  L  + +++       +A++   R  +  +
Sbjct: 376  PLEPGPAALNGIVRLGFFPSMDEERSYVADHLAQAYEQHDGDHPFTAAVLVRKRKHSAAI 435

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
             LEL + G+ ++I     L      + L ++   + +  D  A   ++  P    G  + 
Sbjct: 436  ALELQQRGVPVEIVGLAGLLGIPEVADLVAIATLLVRPYDTQAAMRILAGPSVGLGMADL 495

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV- 521
                 +        R          L+ L      T  ++       +    +  E    
Sbjct: 496  MALSDRAYNLSGRDRRATTELSRDPLERLKQIIADTTPSDQDSIVGLAEAVADLDERLDS 555

Query: 522  ----LLVDHILQCITPLVTYKTNKNSTCGNLSISDW---TKLTVTCLQNVCLDEHRKLPN 574
                       + +  L        +   + S+ D     +        V   E  +   
Sbjct: 556  SDGPRYSAKGSERLRTLAARLRYLRTNSLSNSLPDLFADIERVFGIRTEVLQREDPRSDG 615

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                      + +            +  ++++ +     +G         +  + IL   
Sbjct: 616  ATGTAHLDRFAEVVQDFSRIPGANLSLLLDYLSLAESEENGLEPGEVQVTADRVQILTVH 675

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----------------NLKTAE 678
            +++ L +  + +   +   +    +     +  + S L                 + T +
Sbjct: 676  KAKGLEWQHVAVLHADANTYVAKASTWLTNASAVPSALRGDAKGDEDLVGAPVFEIDTPD 735

Query: 679  KYIGQ-------------------AAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQ 717
                                    A   +         +   +  +     P +   +L 
Sbjct: 736  TAAELAKAGKAHIADFKQVAAEENARLFYVAITRAEQQVLVTASADPSKKRPVLPYEYLT 795

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-----------HYKRPKPFPPLEAQ 766
             L      D  +   +RG+               P              + +P    +  
Sbjct: 796  MLRNDF-PDSVEEWHERGEAEDYVPPAPQEAVFPPNYIVVGAEDVFAAMQKQPDLISDDD 854

Query: 767  PRTYSFSEIKQLINDPYAVYARRIL-----KLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                   E+  LI +   + A  +      +L          +  +        +     
Sbjct: 855  LFERWEKEVSALIEEHEQLSAPVVAVNIGVELTATDIVNLAKNPENFAQRRRRPVPFKPN 914

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHI-DIIWRHLFHKISHSFLEHEEKIQSSIEK 880
                + T     L  +        E   P I + +      ++  +FL+ E   +     
Sbjct: 915  SYAKRGTAFHEWLENRFGAEALLDETELPGIGEELDDSDLDRLKEAFLDSEWADR---TP 971

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
              V  P +++I      + G  D +     G   + D+KTG  P     ++ +  QL++ 
Sbjct: 972  EHVEHPFEVSI--GRHIVRGRMDAVFKNSDGRWIVVDWKTGQPPTDNHEKESVAMQLAVY 1029

Query: 941  AAALKAGSFSQIDCRKV 957
              A        +D    
Sbjct: 1030 RLAWARLQGIDVDRVDA 1046


>gi|332653420|ref|ZP_08419165.1| putative ATP-dependent nuclease [Ruminococcaceae bacterium D16]
 gi|332518566|gb|EGJ48169.1| putative ATP-dependent nuclease [Ruminococcaceae bacterium D16]
          Length = 1117

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 123/996 (12%), Positives = 262/996 (26%), Gaps = 149/996 (14%)

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                     L       P + +  RLL + + +     +L             ++   P
Sbjct: 62  SFSRLANRVFLAAGGVGEPELDSGGRLLLMYQAVKAVSQEL-------------TVYARP 108

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
           +      +NL   +D +++   + + L     E  G         L +    + + L   
Sbjct: 109 SRRPAFLENLLATVDELKSCCVQPQLLLQAGEEVEGPE-GDKLRDLGLICGAY-QALTAR 166

Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGP--IIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
            A  P   +  L R   +           + + G T   P    +++ +    +   V  
Sbjct: 167 TALDP---RDRLTRTAEKLSTCPWAEDMDLWLDGFTDFTPQQGEVLAQLMAQAHQITVTL 223

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D          I                 P    A +L  L  +R     +  +S+  
Sbjct: 224 TCDHLEEDEGGTGIF---------------SPARRTAAMLLRLAKERGISCEVETLSSNC 268

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
             +   ++K       S                 C   V L  A   R E    A  +R 
Sbjct: 269 SSKVSALNKVEQELFGSQ-----------GEPVPCEGAVELHRALTPRSEVEWAASRIRT 317

Query: 381 SLDENK---KKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
            + E     +   +   D    + +      R+ + +  SA   +      +++T+ L  
Sbjct: 318 LVREEGLRYRDIEVTARDFGTYQPLIESVFPRYQVPVFASAMTDILEKPILTLVTAALET 377

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           +     +  +   +K  L      ++ L         +       +              
Sbjct: 378 VAGGYRYDDVFRYLKTGLTDLPEEDRDLLENYVLKWNLRGSRWTQTKPWT---------- 427

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS----- 551
                  H   +   + EEDK L   L     Q   PL   + N N T    +I+     
Sbjct: 428 ------MHPRGYGFPMMEEDKVLLERLDRARRQVAEPLELLRKNTNKTGEGQAIALYSFL 481

Query: 552 ---DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
                 +     +  +   E   L    + +  + +     +  +          E+  +
Sbjct: 482 ENIGLPERLEERVAALRQREQPALAE-EYRQLWEIVCGGLEQCAQLLGETPMELEEFAAL 540

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
              ++    V         +    T      +   L L G ++   P+ +     LS   
Sbjct: 541 FRLVLSQYDVGTIPVSLDRVTAGETTRQTGQHGKVLFLLGADDASIPQVSTPAGLLSDDD 600

Query: 669 QS-----DLNLKTAEKYIGQAAHDFEMANGTR---HLIYTRSLRENNIPTIASRWLQR-- 718
           +S      L L    + +             R    LI +   +          +L    
Sbjct: 601 RSLLASYGLELNQTARDLLYREMTTVYLTCARPTQKLIVSWPGQSGAGEERRPCFLVERL 660

Query: 719 ---------------------------LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
                                      L   G +    +       Y     +LD   + 
Sbjct: 661 RLLFSDLTVEREEDLYGRFRLQAPLPALEQAGRSQSAHDALLALPEYAPLVERLDRAARW 720

Query: 752 PHYKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
              +  +P            S S + +  +  ++ + R  L+ +            + GT
Sbjct: 721 ERGRLSRPAVERLYGHRVPMSASRMDKYKSCHFSYFMRYGLQAEPRKP--AGFTAPEYGT 778

Query: 811 LFHNIITELIK------------------KRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
             H ++  ++K                  +R ++        +KQ +             
Sbjct: 779 FVHYVLEHVLKDDAFQQTTLPGWEDEQDQERRDRVAELTRQAVKQYVREELGGLEQQSER 838

Query: 853 DIIWRHLFHKISHSFLEHEEK--IQSSIEKIFVNIPA---------KMAIESIGIHLTGF 901
                    +   + +++  +    S    I   +           ++ +  + + +TGF
Sbjct: 839 FQYLFRRLLRSVQAVVDNVTQEIWASKFRPISFELGFGSGKDLPPVELTVGDVTLSITGF 898

Query: 902 ADRID-LLKSGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
            DR+D   K G   + + DYKTG            +  Q+ L    L+     +   + V
Sbjct: 899 VDRVDGWEKDGRLYLRVVDYKTGRKSFDLTEVWNGLGLQMLLYLFTLEDRG-EKFYGKPV 957

Query: 958 ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
                + L  +  I   +      +  +  +K L  
Sbjct: 958 KGAGVLYLPARDAIIKGSRSMSDDAWRKQLDKELTR 993


>gi|307267169|ref|ZP_07548677.1| ATP-dependent nuclease subunit B [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917820|gb|EFN48086.1| ATP-dependent nuclease subunit B [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 1153

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 126/952 (13%), Positives = 263/952 (27%), Gaps = 150/952 (15%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
               K ++++I  ++  E   E L  +      +        + +    + E L   N   
Sbjct: 117  GFIKKVSEVITELKRFEVTPEKLLEITETIDNLGLREKLKDISLIYSKFEESL-HQNYID 175

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                   L     E+  +       I G TG  P   R++  +    +   V   +D   
Sbjct: 176  QEDELTLLAEKL-EYSSQFEGAEFWIDGFTGFTPKQYRVIEKLLKKASRVNVTLCMDTSH 234

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
             +   +T     T   + +             +    +I  E    L     E +  S  
Sbjct: 235  NSYEIDTTDLFYTTKKTEDKLLE---------ICQRNNISYEKPVYLNGEIPERFRESEE 285

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
            +S       +   +                 D+++ +A N   E    A  +   + +  
Sbjct: 286  LSFIEKHLFSYPYKVYLKE----------TEDISIFKAVNVYSEVEETARDIIRLVRDEG 335

Query: 387  ---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                   + T D     + +K   +++GI   I   I +        +TSL +   K   
Sbjct: 336  FRYSDIVVATRDLNRYHKLIKAIFSQYGIPYFIDLKIEIKNNPIIVFITSLFDIHLKRWS 395

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            + ++   +K         +  L         +     K       L      R       
Sbjct: 396  YESVFRYLKTGFTDLEKEDINLIENYVLANGIKGDKWKEEVWNYRLN----YRFDRLSIE 451

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCI------TPLVTYKTNKNSTCGNLSISDWTKL 556
                    R++E  +++A  L D   +            T             I    + 
Sbjct: 452  EDEKEIIERVNEIKRKIATSLQDFYKKFSKSKNIKEACGTLYDFLVEMKLPQKIEKLIEK 511

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                       E        + +    +  +  +++E     K    ++  I++   D  
Sbjct: 512  FKE--------EKEYDTANQYAQVWDIVVDVLDQLVEVMGEEKVTVEQFAKILSIGFDEY 563

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS------ 670
             +         + +      +  N   L + G+N+G++P    +   L+   +       
Sbjct: 564  QIGSIPPALDEVLVTSVDRMKSHNAKALYIIGVNDGIFPAALFEEGILTDGDREILASHN 623

Query: 671  -DLNLKTAEKYIGQAAHDFEMANG-------------------TRHLIYTR--------- 701
             +L+  T  K   +    +                           +I +R         
Sbjct: 624  VELDRDTKTKIFEEQFLVYTALTSTSKFLRISYPIADHEGKSLRPSIIISRLKKIFPKIK 683

Query: 702  ----------SLRENNIPTIASR---------------------WLQRLLVLGGTDFFDN 730
                      +    N  +  S                      WL        ++ +  
Sbjct: 684  QFSNVVEMDTAEENLNRVSTPSPTFNEMVSAVKKWDITNKMHPLWLDVYKWYAKSESWKP 743

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
               R    L +T +++                L      +S S +++    P+A + +  
Sbjct: 744  KLTRALEGLYYTNQVEKVPAHK-------VKKLYGDEMYFSVSRLEKYAACPFAYFVQYG 796

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-------PEINHLMKQIIDSHF 843
            LK      F  +P   D GT  HN++    K    +            +  +  I+D   
Sbjct: 797  LKAKERKIFSFEPP--DLGTFMHNVLDRFSKALEEEGLTWQDIDREWCDEAVAIIVDDMI 854

Query: 844  EK---ENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MA 890
            +K     L       +      ++  +  ++  E   +SS   +   +          + 
Sbjct: 855  QKIPGYILNSSPRYKYLAERLKRVLSNAVWVVSEHIKRSSFVPLDHEVAFGDNQKYPPIK 914

Query: 891  I---ESIGIHLTGFADRIDL---LKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAA 943
            I       I+L G  DR+D+       ++ I DYK+G            ++ QL +   A
Sbjct: 915  IVLSNGEEINLIGRIDRVDIFEKEDEAYIRIIDYKSGNKTLDLSDVFYGLELQLLIYLDA 974

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            +   + +       A +FY ++      D I    K  S +EL  +  K L 
Sbjct: 975  ILESAINGNTNLNPAGIFYFKID-----DPIIKADKDISDEELQMQIFKKLR 1021


>gi|183981381|ref|YP_001849672.1| ATP-dependent DNA helicase [Mycobacterium marinum M]
 gi|183174707|gb|ACC39817.1| ATP-dependent DNA helicase [Mycobacterium marinum M]
          Length = 1057

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 119/1059 (11%), Positives = 266/1059 (25%), Gaps = 126/1059 (11%)

Query: 27   NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT--------GKKSTILPII 78
            +  LV+             SV +   + R     RS              G+ +   P++
Sbjct: 32   SALLVQAAIAHIAAGADPESVLLLTGSGRMGMWARSSLTTALLRSHTTGTGRAAVREPLV 91

Query: 79   KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL--YPESPL 136
            +S+              + +  P      RLL  A    I R  L   ++D      +  
Sbjct: 92   RSVHSYAYAVLRRAAERTGDAPP------RLLTSAEQDAIIRELLAGDLEDGPSARSAWP 145

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
               +        A  L +++           +L  L        W  A  F +   +   
Sbjct: 146  RHLLPALTTAGFATELRNLLARCAERGVDPMELERLGRRSGRPEWAAAGRFARQYEQ--- 202

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
                       V    A +            G   + GS     A+   +          
Sbjct: 203  -----------VMLLRAAVGTATPQATAPALGAAELVGSALEAFASDPELLAAERARLRF 251

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            +++       P A        +    +          +          +           
Sbjct: 252  LLVDDAQQLDPQAARLVEVLAAGAEFALIAGDPNQAVFGFRGGEPAGLLGGPLDGGPAVT 311

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                +  +  ++++           +          +     V L    +    AI+ A+
Sbjct: 312  LTMSHRCAPAVARAVSGIARRLPGGSAGRHIDGTGTEDGSVTVRLAATAHAEAAAIADAL 371

Query: 377  ALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHSSILTSL 433
                 +D     + + ++ +   +A R+   L   G+ +     G  L+       L ++
Sbjct: 372  RRAHLVDGVPWSQMAVIVRSVPRVAARLPRALAAAGVPVSIPPIGGSLAEEPAVGALLTV 431

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            L A  +  +      L+  P+ +         R      +      ++  D  DL     
Sbjct: 432  LAATAEGLNADQALALITGPIGRVDPVTLRQLRRTLRRAV----AGRSPEDFGDL----- 482

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +AT   +       +  ++        L             ++  ++      +    
Sbjct: 483  -LVATLSEDGRPAVGSAGSNQPPGPQFGPLRRVRAVLAAATRCHRAGQDPRYILWAAWHR 541

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            + L    L  +       +      E    L  +  + +   S    +    ++ +  L 
Sbjct: 542  SGLQNRWLAAIDRGGPAGVQATRNLEAVTALFDITDQYVSRTSGASLSG--LLEHVAALQ 599

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD-- 671
                 +  + ++  + +L    +    +D +++ GL +G+WP    +   L+     D  
Sbjct: 600  LPRVSEEPVAQNEQVRVLSAHAALGHEWDLVVIAGLQDGLWPNTIPRGGVLATQRLLDEL 659

Query: 672  ------LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI----ASRWLQRLLV 721
                   + +       +      M    R L+ T    + +         S +   +  
Sbjct: 660  DGVSGNASARAPLLAEERRLLLAAMGRARRQLLVTAVDGDTSGGGQQAALPSEFFFEIAQ 719

Query: 722  LGGTD--FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL---------------- 763
                D              L     +                                  
Sbjct: 720  WANGDSQAVAAPPVSAPRVLSAAAVVGRLRGVVCAPDGAVDDAARQCAATQLARLAKAGV 779

Query: 764  ----------------------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                                       T + S ++ L + P    A R    +       
Sbjct: 780  AGADPAGWHGLIPVSTTAALYGAGDVVTLTPSTLQTLNDCPLRWLAERHGGTNPRDLR-- 837

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
                   G++ H +I E        +  ++   + + +      E               
Sbjct: 838  ----ATIGSVLHALIAE-----PGASEEQLLAELAR-VWKLLPFEADW--FSSNELARHR 885

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-----SIGIHLTGFADRIDLLKSGFVDIT 916
             +  +F+E   + +S + ++ V I     ++        I L G  DR++   +G + I 
Sbjct: 886  AMIQAFVEWRGQTRSELTEVGVEIDIDGVLDAARDDGGAIRLRGRVDRLERDGAGRLVIV 945

Query: 917  DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
            D KT   P  +   +    QL++   A+  G          A L Y              
Sbjct: 946  DIKTAKTPVSKDDAQQNA-QLAMYQLAVAEGMVEAGAEPGGARLVY-------PGKSAAA 997

Query: 977  DKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013
               +   D L+  +      +V           FI+   
Sbjct: 998  GAAQRDQDPLTPAARDQWRNLVRQAAEAAAGPHFIARRN 1036


>gi|118618003|ref|YP_906335.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99]
 gi|118570113|gb|ABL04864.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99]
          Length = 1057

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 119/1059 (11%), Positives = 265/1059 (25%), Gaps = 126/1059 (11%)

Query: 27   NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT--------GKKSTILPII 78
            +  LV+             SV +   + R     RS              G+ +   P++
Sbjct: 32   SALLVQAAIAHIAAGADPESVLLLTGSGRMGMRARSSLTTALLRSHTTGTGRAAVREPLV 91

Query: 79   KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL--YPESPL 136
            +S+              + +  P      RLL  A    I R  L   ++D      +  
Sbjct: 92   RSVHSYAYAVLRRAAERTGDAPP------RLLTSAEQDAIIRELLAGDLEDGPSAGSAWP 145

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
               +        A  L +++           +L  L        W  A  F +   +   
Sbjct: 146  RHLLPALTTAGFATELRNLLARCAERGVDPMELERLGRRSGRPEWAAAGRFARQYEQ--- 202

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
                       V    A +            G   + GS     A+   +          
Sbjct: 203  -----------VMLLRAAVGTATPQATAPALGVAELVGSALEAFASDPELLAAERARLRF 251

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            +++       P A        +    +          +          +           
Sbjct: 252  LLVDDAQQLDPQAARLVEVLAAGAEFALIAGDPNQAVFGFRGGEPAGLLGGPLDGGPAVT 311

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                +  +  ++++           +          +     V L    +    AI+ A+
Sbjct: 312  LTMSHRCAPAVARAVSGIARRLPGGSAGRHIDGTGTEDGSVTVRLAATAHAEAAAIADAL 371

Query: 377  ALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHSSILTSL 433
                 +D     + + ++ +   +A R+   L   G+ +     G  L+       L ++
Sbjct: 372  RRAHLVDGVPWSQMAVIVRSVPRVAARLPRALAAAGVPVSIPPIGGSLAEEPAVGALLTV 431

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            L A  +  +      L+  P+ +         R      +      ++  D  DL     
Sbjct: 432  LAATAEGLNADQALALITGPIGRVDPVRLRQLRRTLRRAV----AGRSPEDFGDL----- 482

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +AT   +       +  ++        L             ++  ++      +    
Sbjct: 483  -LVATLSEDGRPAVGSAGSNQPPGPQFGPLRRVRAVLAAATRCHRAGQDPRYILWAAWHR 541

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            + L    L  +       +      E    L  +  + +   S    +    ++ +  L 
Sbjct: 542  SGLQNRWLAAIDRGGPAGVQATRNLEAVTALFDITDQYVSRTSGASLSG--LLEHVAALQ 599

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD-- 671
                 +  + ++  + +L    +    +D +++ GL +G WP    +   L+     D  
Sbjct: 600  LPRVSEEPVAQNEQVGVLSAHAALGHEWDLVVIAGLQDGSWPNTIPRGGVLATQRLLDEL 659

Query: 672  ------LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI----ASRWLQRLLV 721
                   + +       +      M    R L+ T    + +         S +   +  
Sbjct: 660  DGVSGNASARAPLLAEERRLLLAAMGRARRQLLVTAVDGDTSGGGQQAALPSEFFFEIAQ 719

Query: 722  LGGTD--FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL---------------- 763
                D              L     +                                  
Sbjct: 720  WANGDSQAVAAPPVSAPRVLSAAAVVGRLRGVVCAPDGAVDDAARQCAATQLARLAKAGV 779

Query: 764  ----------------------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                                       T + S ++ L + P    A R    +       
Sbjct: 780  AGADPAGWHGLIPVSTTAALYGAGDVVTLTPSTLQTLNDCPLRWLAERHGGTNPRDLR-- 837

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
                   G++ H +I E        +  ++   + + +      E               
Sbjct: 838  ----ATIGSVLHALIAE-----PGASEEQLLAELAR-VWKLLPFEADW--FSSNELARHR 885

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAI-----ESIGIHLTGFADRIDLLKSGFVDIT 916
             +  +F+E   + +S + ++ V I     +     +   I L G  DR++   +G + I 
Sbjct: 886  AMIQAFVEWRGQTRSELTEVGVEIDIDGVLDAARDDGGAIRLRGRVDRLERDGAGRLVIL 945

Query: 917  DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
            D KT   P  +   +    QL++   A+  G          A L Y              
Sbjct: 946  DIKTAKTPVSKDDAQQNA-QLAMYQLAVAEGMVEAGAEPGGARLVY-------PGKSAAA 997

Query: 977  DKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013
               +   D L+  +      +V           FI+   
Sbjct: 998  GAAQRDQDPLTPAARDQWRNLVRQAAEAAAGPHFIARRN 1036


>gi|253996792|ref|YP_003048856.1| DNA helicase/exodeoxyribonuclease V subunit B [Methylotenera mobilis
            JLW8]
 gi|253983471|gb|ACT48329.1| DNA helicase/exodeoxyribonuclease V, subunit B [Methylotenera mobilis
            JLW8]
          Length = 897

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 99/769 (12%), Positives = 224/769 (29%), Gaps = 68/769 (8%)

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
            +    +     +   + S         Q +         I      +       +    +
Sbjct: 131  LWQQAFQARCGELNALESVRYLDWQLSQLANVGSGLPCRIAFAGFDQTAPQEKRLREILI 190

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                      T+           + +            A     +  ++   +   L E 
Sbjct: 191  ARGVQVEDYVTTANEPAQAQHVCLEHDDAECRAAVAWAAQYLAAQPDAVIAIVTPRLGEV 250

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI-FKLNDFM 444
            + + A +  D      V+  L       + S G PL+          LL  +      + 
Sbjct: 251  RSQLADLLDDVLYPESVRPSLAALPRRYNFSLGTPLAQQPVVQAALHLLRLVTAYQLAYA 310

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
             ++ ++  P       E       +A     L         +       D     +    
Sbjct: 311  DVSAMLLSPFWSASQQEADARALLDARMREKLPAQFTLASFIAFAQKQHDEGLNLQQLLQ 370

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
              +            A                              + W ++  T L+++
Sbjct: 371  DLNAVVAAVPSKLAHA------------------------------AQWGEVLDTLLEHM 400

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                 R + +L ++       +L           + +A + +  + ++   +  +P+ E+
Sbjct: 401  RWPGERTISSLEYQAINAWQKALQQLAQLDVLGRRISANQAVAYLQQICTNQVFQPETEQ 460

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
            +  + ILG +E      D +    +N+ +WP     NP L   +Q    L  A+  I   
Sbjct: 461  TPAIQILGIMEGLSAPVDAIWCMHMNDHIWPPPARPNPLLPAFIQRTAGLPNADDSIQAT 520

Query: 685  AH---DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                    + +  + + ++ S         AS  +  +  L                   
Sbjct: 521  FAATIHHRLLHSAQQITFSSSRTSGESQLRASPLMHDIPTLDTDIPLAET---------L 571

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYS--FSEIKQLINDPYAVYARRILKLDFIPHF 799
              +L  +  +          P+  +    S     +K     P   + +  L    +   
Sbjct: 572  AEQLSASAHETLMHMDDHMAPIVEEGDHVSGGTGLLKAQAICPAWAFYQYRLGAKALKTP 631

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINH-----LMKQIIDSHFEK-----ENLP 849
                D   RG+L H+++     KR   +  +++       +KQ +    E      +   
Sbjct: 632  TSGLDNMMRGSLVHDVLERFWNKRHFADLRDMSADDFILALKQAVSLTLEDFATETDVAS 691

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909
            P I  +       +   +L+ E++   + + I   +   + I  I + L    DR+  L+
Sbjct: 692  PAILELEHERLFNLVGDWLQFEKERGVAFKMIGCEVSKLVQICGIEVTL--KIDRVHELE 749

Query: 910  SGFVDITDYKTGDNPKKET--AQKLIDPQLSLEAAALKAG--SFSQI--DCRKVANLFYI 963
            +G ++  DYKTG  PK +     ++ +PQL + A+       + + I     KVA+  + 
Sbjct: 750  NGGLEFIDYKTGQTPKTKNWGEDRITEPQLPIYASFYAENTQAVTGIYFGMVKVADHAFS 809

Query: 964  RLKQ-----KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
             + +     +         +       L +    ++ +I   L+ GE  
Sbjct: 810  GVGEVNFETEQAKRKPAFTQNFVDWPHLLQHWKASIEDIALELKAGEAA 858


>gi|315283381|ref|ZP_07871589.1| ATP-dependent nuclease subunit B [Listeria marthii FSL S4-120]
 gi|313612971|gb|EFR86905.1| ATP-dependent nuclease subunit B [Listeria marthii FSL S4-120]
          Length = 1157

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 118/960 (12%), Positives = 275/960 (28%), Gaps = 136/960 (14%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L  +  L +     +       LA++   ++ EE   ED+                  
Sbjct: 97   AALDQKDELKIFSKATSRKGFYSELANLFKEMKQEEVSIEDMVN-SASNLSTSVNSKVHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + +  + + + L +    +    ++   +      +   +  I+I G T        ++ 
Sbjct: 156  ISLIYQKYEQLLADKFLENEDYLRLLAEKIVESDYLN--QTEIVIDGFTSFSKQELTVIG 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   V   L+      I + + E S    S++        Y+L  L     I+ 
Sbjct: 214  ELMRKCDKVTVSLTLNV---PEIQHGLDEYSMFKASTDAY------YALLDLAKLSGIQV 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E  K               ++ ++        +                S++ + +A+N 
Sbjct: 265  EQDKFFLANKRAKTDSLEFLANAWGHNKFMAFKGE-------------PSNLKIHQANNR 311

Query: 368  REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   IA  +R         +  A++T +  +     +  +  + I I I     ++  
Sbjct: 312  RAEIEGIAREIRQLTLSGYRYRDMAILTRNLGDYDILCETVMESYDIPIFIDKKRAMAKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK             L R  + LE   L     + 
Sbjct: 372  PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITENSSALRRKSDILENYVLENGIQNK 431

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
               + +   + R     +   +P     +  +       + +     + PL T + N   
Sbjct: 432  WKWEKEGDWVYRKIRGLSTNVLPQTDEEIHTQSI-----INEMRNMILAPLSTLENNLRK 486

Query: 544  TCGNLSISDWT----------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
                +  +             +   +  Q    ++         E+   ++S+L  + +E
Sbjct: 487  ANTGMEFALALYHYLEQVKAVERLESWRQR-AEEQGYLELAREHEQAWSSISALLDEFVE 545

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                   + I + +II   +D             + +     ++LL+   +   G+N+GV
Sbjct: 546  VLGKETLDLISFTEIIATGLDALEFSLLPPSLDQVVLADMENAKLLDMKVIFAIGMNDGV 605

Query: 654  WPKNTAKNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRE 705
             P        LS   +  L         +A+  IG+            +  L  +    +
Sbjct: 606  MPLRQKDKGILSDQDRDALRAEDSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAAD 665

Query: 706  NNI-----------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL--- 745
                                    S +L    +L   +  + ++ +       T +L   
Sbjct: 666  EEGKVLSESNYLRKIKGQFKELNESVYLTDPSLLSDEEQSNYIRSKQATLGLLTSQLQMY 725

Query: 746  ------------------DYTTKQPHYKRPKPFPPLEAQPRTY---------------SF 772
                              +   +    K+       E + +                 S 
Sbjct: 726  KRGYPLSNVWWDAYNSYFEDAKESRMAKQVLSSLYYENKTKPLQEITAKNLFGETIHASV 785

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-- 830
            S +++  +  +  +A+  LKL+   HF+      D G +FH  +  +  +    N     
Sbjct: 786  SRMEKFFSCEFQHFAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGN 843

Query: 831  -INHLMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHS--FLEHEEKIQSSIE 879
                  +Q+                          ++   +I      + +E+   S+  
Sbjct: 844  LTEEECRQMAKQAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFR 903

Query: 880  KIFVNIPAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-K 925
             + + +   +  +   +           L G  DRID+ +      + I DYK+  +   
Sbjct: 904  PVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLA 963

Query: 926  KETAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
                   +  Q+      +   +   I    + A + Y  +  ++         +  S +
Sbjct: 964  LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAISKE 1023


>gi|154502321|ref|ZP_02039381.1| hypothetical protein RUMGNA_00134 [Ruminococcus gnavus ATCC 29149]
 gi|153796946|gb|EDN79366.1| hypothetical protein RUMGNA_00134 [Ruminococcus gnavus ATCC 29149]
          Length = 1116

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 112/923 (12%), Positives = 260/923 (28%), Gaps = 134/923 (14%)

Query: 151 NLADIIDIIETEEKKWEDL----HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
            +  +I         +E+L      L  E +  +       +++  + + + L E   + 
Sbjct: 120 EVKSVISEFTQYGVGFEELDVLMENLDEESFLYY---KLSDIRMIYEGFEQFLAEKYIT- 175

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                + ++              I + G TG  P   RL+  + +      VL  ++   
Sbjct: 176 -KEELLDVLSQMVAKSEILKNSVIALDGFTGFTPVQNRLLGELMSICK--EVLITVEMDG 232

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               +                 S      L ++     I+  D   L +           
Sbjct: 233 REDAFRYTHPYQL------FALSKQMVTGLVQIAGERKIEIADPIYLYDKPVYR------ 280

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
               F          +++              +++  A +   EA   A  +R  + E  
Sbjct: 281 ----FRSNPELGFLESELFRYSRKQYPDETDHLSVYAAGSPDMEAKLTAQKIRRLVREKG 336

Query: 387 ---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              +  A+I +D       ++   T + I + +     +        + S+L+ + +   
Sbjct: 337 YHYRDIAVICSDMGTYADHLERACTEYQIPVFMDYKKSILLNAFVEYVRSVLSMVEQDFS 396

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
           + ++   ++    +F   E                   N    + L+     +    +  
Sbjct: 397 YESVFRFLRTGFTEFTRDEIDRLE--------------NYVVAVGLRGYKKWQAVWARKT 442

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
           +     +  +    +   V +   ++  +        +         + +  +  +  ++
Sbjct: 443 SSADEEELAVLNGLRVRFVEMTQSLVFVLKQRKKTVRDICEAVYRFFVENQIQQKLKVME 502

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
           N   ++        + +  + +  LF K  E       +  E+ +++   ++   V    
Sbjct: 503 NCFAEKKELALAKEYAQIYRIVLELFDKFAELLGDEGISLKEYCELLDAGLEEAKVGVIP 562

Query: 623 EKSSTLFILGTLESRL-LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ------SDLNLK 675
                + I     +RL  N   L   G N+ + P N  +   L+   +            
Sbjct: 563 PGMDQVVIGDVQRTRLKSNLKALFFVGANDTLLPGNMGQGGLLTERDREWFQKEKQALSP 622

Query: 676 TAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWL----------------- 716
            A++          M        L  + S   ++  T+   +L                 
Sbjct: 623 GAKEKTYIQKFYLYMNLTKPEEFLHISYSKVSSDGKTLRPAYLVWDLKKLFPKLVVTEEE 682

Query: 717 ---------------------QRLLVLGGTDFFDNL--KKRGQCYLDWTRKLDYT--TKQ 751
                                 R   LG  + +  L    R        R LD     K+
Sbjct: 683 ALLMTQRELTLGEGLEFVIRGVRDRYLGVDESWKELYTWYRQNEGQKVDRILDAGFFKKK 742

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
           P     +    L  + + +S + +++     YA +    L L      + + +  D G +
Sbjct: 743 PDALTGEEAAELYGEKKQFSVTRMERFSACAYAHFLTYGLHLSDRE--RYEFEAMDLGNI 800

Query: 812 FHNIITELIKKRINKNTP-------EINHLMKQIIDSHFEKEN----LPPHIDIIWRHLF 860
            H  +    +K   K  P       + + ++++ ++   +            +       
Sbjct: 801 AHQSMERFARKAQEKRMPWPKLEEVQRDAMIEESVEESIKDYGNTVLYSTARNEYMIVRI 860

Query: 861 HKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD---I 915
            ++     +    +  +   E     +             +G  DRID  +   V    +
Sbjct: 861 KQLIRRSVWALTRQMEKGDFEPSGYEMNFG----------SGKIDRIDTCEDEDVVYVKV 910

Query: 916 TDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC--RKVANLFYIRLKQKFKID 972
           TDYKTG  +         +  QL +   A       +      + A +FY R+K      
Sbjct: 911 TDYKTGMKSFDIVALYHGLQMQLPVYLNAALELEERRAPGKTVEPAGIFYYRIKD----- 965

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
                 ++     L EK LK L 
Sbjct: 966 --PIVDREKDDHALEEKILKELR 986


>gi|299138775|ref|ZP_07031953.1| putative DNA repair protein [Acidobacterium sp. MP5ACTX8]
 gi|298599411|gb|EFI55571.1| putative DNA repair protein [Acidobacterium sp. MP5ACTX8]
          Length = 898

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 104/851 (12%), Positives = 253/851 (29%), Gaps = 79/851 (9%)

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL-DCHIPTAIWNTI 274
            R       +      ++ G+     AT     ++A+    A  L    +       + T 
Sbjct: 74   RLLLNEAQEHDLWREVVTGTREGDEATLGSSDSLADMARQAWNLAHAYNATERLRAFATT 133

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             +  T    + T      Q           + R+ ++     +      +          
Sbjct: 134  HDARTFAGWAETFARGCEQRGYLSRAALETVLRQHIEAGTLTAPTHVTLAGFGDWVPART 193

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALIT 393
            +  D   +  +++ +    +  +  A+++AD+E++E +++A  +R  +++    +  ++ 
Sbjct: 194  ELLDAMRSVFVQHAMDVPLQLGAQRAIVQADDEQDELLALARWIRNFVEQRPSARVGVLL 253

Query: 394  ADRNLARRVKLELTRFG--------------INIDISAGIPLSTTLHSSILTSLLNAIFK 439
             D    R     L R                   + S+G PLS+    +    L      
Sbjct: 254  PDMEKDRAELETLFREILAPELQQIGIDLSSTPYEFSSGKPLSSLPMIAAALDLARWTQG 313

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
              +   ++ L+  P       +   ++                +D  DL+      +  +
Sbjct: 314  PLELGKVSALLLSPYLGTSGGQNQSAQ----------------FDAYDLRQA--KLLRPE 355

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
             +   + +   + S     LA          + PL  +     +       +DW +    
Sbjct: 356  IDLPSLLYLAQQSSRGTAPLA---------WLQPLNAFFKRNENRGTPRGFADWAEFLRG 406

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
              +       R L    F+        L           + +    +  + R     T+ 
Sbjct: 407  LAKAANWPGERPLTGDEFQATIAWDHLLDQMATLDFRGRRVSFSTALRTLERQ-ANATLF 465

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT--- 676
                  + + ++    +  + FD ++     +  WP     NP L   +Q+ L +     
Sbjct: 466  APPSNDAPVQVMTPANALGMTFDAVLFARATDANWPPVERSNPLLGWGLQASLGMPGTSQ 525

Query: 677  AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                         + + +  +++T +    +     S  +  L        +  +  R  
Sbjct: 526  PRATERAQYALDRLLSSSSDVLFTYARENADGDQRLSPAIAELD-------WQQVAARDL 578

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                                    PPL +         ++      +  +A   L    +
Sbjct: 579  NPASPAALQVTEEIVEDI---ASLPPLPSSNVRGGARVLQLQAACGFRAFAEIRLGATEL 635

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNT------PEINHLMKQIIDSHFEKEN--- 847
                   D  + G+L H  ++   ++  +++            L+ + ID   +K+    
Sbjct: 636  EASDAGFDARENGSLLHGAMSRFWEEVQSQSALQAMSRDARAQLLGRCIDQALDKDLNIQ 695

Query: 848  --LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
                     + +    ++   +L+ E +        ++     + I  + + L    DR+
Sbjct: 696  GRWDEAYVALQKERLQRVLLQWLDKEMERGP-FTVQYIEHDELIDIGPLDLKL--RIDRL 752

Query: 906  DLLKSGFVDITDYKTGDN--PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV---ANL 960
            D+++ G V + DYKT  +  PK    ++  +PQL L A    AG    +   KV    ++
Sbjct: 753  DIVE-GGVFLVDYKTSYSSDPKNWLGERPDEPQLPLYALLPGAGELKGLAFAKVRPGRDM 811

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
             ++  +    +   T  +         E+    L  +      G+            + +
Sbjct: 812  KWLGYQDAEGLIPGTPARTVLDMQSQVEEWRTTLTTLAESFAGGDATVHPKDYPM--TCV 869

Query: 1021 QSEYDHLARVA 1031
                  L R+ 
Sbjct: 870  HCAQRLLCRLD 880


>gi|297531124|ref|YP_003672399.1| ATP-dependent nuclease subunit B [Geobacillus sp. C56-T3]
 gi|297254376|gb|ADI27822.1| ATP-dependent nuclease subunit B [Geobacillus sp. C56-T3]
          Length = 1172

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 125/963 (12%), Positives = 262/963 (27%), Gaps = 136/963 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-------KYGMWWLLAADFL 188
            L L    A+     + L ++I   +       +L                         +
Sbjct: 112  LKLFGRAADKHGFIEQLNEMITECKRYCLTPGELRRHAEAFEDGPDQPGRRLLADKLSDV 171

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
             +  +   + L  +         + L+              I I G     P    ++  
Sbjct: 172  ALVYEELEKSL--IGHYLDSEDYLRLLAEHIPRSSYLRDADIYIDGFHHFAPQEYMIIEQ 229

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +  H     V   +D                 +        T+ Q     L + + I   
Sbjct: 230  LLRHCRRVTVCLTIDRPYD-------DGMPDELHLFYLPAQTYRQLRELALSNDIAI--- 279

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
            +   + + +     R++V  ++                  +         V L EA N R
Sbjct: 280  EEPIVLSANRRHEDRALVHLEA------------QFHRRPLLPYGAKTDAVHLYEASNRR 327

Query: 369  EEAISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTT 424
             E  ++A  +   + +     +  ALI       R  VK     FGI   +    P+   
Sbjct: 328  AEIEAVAREIIRLVRDEGARYRDIALIIRQTEAYRDLVKTVFFDFGIPYFMDEKEPMHHH 387

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483
                ++ + L  +     + A+   VK  L      + +    A + LE   L       
Sbjct: 388  PLIELVRAALETVVTRWRYEAVFRAVKTDLLFPTDGDLHMWREAADKLENYVLAYGIKGD 447

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
               + +     R    +    +   Q+    + +++     + +   +  L         
Sbjct: 448  KWTNNERWAYLR---YQALDGLNVPQTNEERQFEDMLNEWREALAPPLRRLERRLRRAED 504

Query: 544  TCGNL-SISDWTKLTV-----TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
              G   ++  + +          +      + R +     E+    +  L  + +E    
Sbjct: 505  GRGFCMALYLFLEELQIPKKLEKMSAQAEADGRLVEARQHEQAWNAVVDLLDQYVEMLGT 564

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                  E++ II   +D             + +     SRL++     + G N+GV P  
Sbjct: 565  ESLPLAEFVKIIEAGLDRLEFSLVPPAMDQVIVAQLDRSRLIDIKYAFVIGANDGVIPAK 624

Query: 658  TAKNPFLSRVMQ---SDLNLKTAEKYIGQAAHD-----FEMANGTRHLIYTRSLREN-NI 708
              ++  ++ V +    +L +  A     Q  +D       +   +R L  T  L +    
Sbjct: 625  VKEDGLMAEVEREQLRELGVALAPGGREQLFYDPFFVYLALVCPSRRLYVTYPLADGEGK 684

Query: 709  PTIASRWLQRLLVLGGTDFFD------------------NLKKRGQCYL----------- 739
              + S  +++L  L                            +  Q YL           
Sbjct: 685  ALMPSPLIKQLTELFPHAPVHLCGNDPFDAPAEKAEAFVTAPRATQTYLISQLRAWKRNY 744

Query: 740  -----------------DWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIK 776
                             DW  ++ +      Y              L  +    S S ++
Sbjct: 745  GIDPLWWDVYNTFIGHQDWKEQVRHAVSALFYTNGATPLKKQWSQRLYGKKIQASVSRME 804

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINK 826
            Q    PYA +A   L+L     F+   +  D G LFH  I ++           ++    
Sbjct: 805  QFQKCPYAHFASHGLRLKERNVFR--LEAPDVGQLFHAAIKQIADRLREQHLDWRELSRP 862

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL-FHKISHSF--LEHEEKIQSSIEKIFV 883
            +   ++    + I    +++ L       +       +      +  E    S    I +
Sbjct: 863  DCERLSAEAIERIAPLIQQQVLSSSHRYEYMKRKLKHVVARTTHVLSEHARASGFVPIGL 922

Query: 884  NIPA---------KMAIESIGI-HLTGFADRIDLLKSGF---VDITDYKTG-DNPKKETA 929
             +           +  +    +  L G  DR+D  +S     + I DYK+          
Sbjct: 923  ELSFGPNGDLPPLRFRLPDGTVMELVGRIDRVDKAESSQGVLLRIIDYKSSAKTLDLTEV 982

Query: 930  QKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
               +  Q+      +   +   +      A + Y  +           D +   A +L E
Sbjct: 983  YYGLALQMLTYLDIVLTYAEQLVGQPALPAGVLYFHIHNPIVQAKQWVDDEVEMAKKLLE 1042

Query: 989  KSL 991
               
Sbjct: 1043 PFR 1045


>gi|169826778|ref|YP_001696936.1| ATP-dependent nuclease subunit B [Lysinibacillus sphaericus C3-41]
 gi|251764607|sp|B1HN89|ADDB_LYSSC RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|168991266|gb|ACA38806.1| ATP-dependent nuclease subunit B [Lysinibacillus sphaericus C3-41]
          Length = 1169

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 118/968 (12%), Positives = 246/968 (25%), Gaps = 138/968 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA----LKNEKYGMWWLLAADFLKIA 191
             SL    A      + +  ++            L      LK            + L + 
Sbjct: 107  FSLFRQAAGKRGFTEEIETLLKEFSRYSVNSSVLAEVKESLKAIDAPNTLQAKTNDLYVV 166

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +   ERL      S       ++  + ++     +  I I G T        L+  +  
Sbjct: 167  LQALEERLGTTYVDSEG--YYPILTEQLKYAETMKQATIYIDGFTAFTVRELELVRELLK 224

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                  V+           ++ I E        +    T+    L  + +   I  E   
Sbjct: 225  VTKHVTVVL---------PFDHIDEAFDEQALFHEAALTN--QRLHDIANEEGIDVEPPL 273

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                           +  +F                 +P+ +K   DV + EA N R E 
Sbjct: 274  HFYYTQRFQSEDLQHVEANFANM--------------VPHTKKTSGDVMVFEASNRRAEV 319

Query: 372  ISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHS 427
             +IA  +     E     +   L+     L   +      ++ I I  +    +      
Sbjct: 320  HAIAREITKLTREYGYRYQDIVLLYRQAELYDPLITSIFQQYEIPIFTNTKKTMLHHPLI 379

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIM 486
             +  S L  +     +  +   VK  L      E        + LE   L          
Sbjct: 380  ELSRSALEIMTSNWKYEPVFRSVKTDLFFPLQAELTIWRERADRLENYCLAQGIYGERWF 439

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTC 545
            +       +    + ++ V   + R  + + E     +   L+ +   L    T K+   
Sbjct: 440  EEPRWFYKKYRGLEFHSRVQTDEERAMQAEIEAIRDEIRQPLKSLQDKLSIASTGKDIAT 499

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLP--NLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                + +  ++          +  R         E+      ++  + +      + +  
Sbjct: 500  ALFELVESLQVYEKLQAMKDRELERGDALAASEHEQAWNEWINVLDQFVYMFGEQEMSVE 559

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
            E   I+    D             + +     +RL N     + G+N+GV+P        
Sbjct: 560  EAAKILDEGFDTLEFSRIPPTLDEVMVATVDLARLSNIKVAFVLGMNDGVYPTRMEYEGL 619

Query: 664  LSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIPTIASRW 715
            LS   +   +        T+   + Q    F  A  T    L  T    +     + S  
Sbjct: 620  LSDTEREWFSQIGYELAPTSSNRLLQENFLFYRAASTPSNKLYLTYPTADEEGKALLSSL 679

Query: 716  LQ--------------------------RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
                                         LL      +  + +      +   R+ +++ 
Sbjct: 680  YIKKFIGNDKIAGLLSGVQAERVVMDPIELLDESALPYLRHPRTALAHLMVQLRQAEHSR 739

Query: 750  KQPHYKRPKPFPPLEAQPRTY---------------------------------SFSEIK 776
            +             +                                       S S I+
Sbjct: 740  ELAPEWLALQKFYQQDPYWALIFDRVHYPITHKNEAEPLETYITQELYGQKLTSSVSRIE 799

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN---H 833
            +    P++ +    L+L+     +   +    G LFH  +  + ++        I     
Sbjct: 800  KYFRCPFSHFTTYGLRLEER--AEYRLETFAMGDLFHEALKWITEETHRLQLSWIRLTKQ 857

Query: 834  LMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFV 883
             +KQ+     E+                   +    +I    +    +    S  + I +
Sbjct: 858  QIKQLARQAVEQIVPVFSHQILLSSARYRYIQRKLIRIVERTMMALTQHANVSHFKPIAI 917

Query: 884  NIPAKM----AIESIGIHL--------TGFADRID---LLKSGFVDITDYKTGDNP-KKE 927
                       +  + I L         G  DRID   +    ++ I DYK+        
Sbjct: 918  EASFGPGQHEQLPPLEIDLTSGKKMFMRGRIDRIDSATIDDRSYLRIVDYKSSARDLDLN 977

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCR-KVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
                 +  Q+          S   +    + A + Y+ +              +   D L
Sbjct: 978  EVYYGLSLQVLTYLDVAMENSTYWLPGETEPAGVLYVHVHNPMLKLDKDMTDSEIEEDRL 1037

Query: 987  SEKSLKNL 994
             +  +K L
Sbjct: 1038 KQYKMKGL 1045


>gi|241895872|ref|ZP_04783168.1| ATP-dependent deoxyribonuclease, subunit B [Weissella
            paramesenteroides ATCC 33313]
 gi|241870915|gb|EER74666.1| ATP-dependent deoxyribonuclease, subunit B [Weissella
            paramesenteroides ATCC 33313]
          Length = 1188

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 116/970 (11%), Positives = 253/970 (26%), Gaps = 143/970 (14%)

Query: 158  IIETEEKKWEDLHALKNEKYGMW-WLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             ++     W+D+  + ++        +    L    +   + L +          +AL  
Sbjct: 136  ELKQSGLSWDDVTDIADKLTNQETLQMKLYDLATIGQSLEDELAQRGQYLSSDLLLALKV 195

Query: 217  AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
              A      +     I   +        L+  +  +  G  +    D             
Sbjct: 196  YLATEKTDISHHYFFINDYSQMTSPERGLVEALITYAGGVTIALPADD------------ 243

Query: 277  KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
              +   + +        Y    L   L       K     +     R M           
Sbjct: 244  -GSASLTESAISENDLFYRPKNLGRQLRDAAVTHKIPVIANTIEAQRKMSSGML----AV 298

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLDENKKKSALIT 393
             D       +  I +       + + +     +E   +A  +R    +     +   L+T
Sbjct: 299  EDFWIKYAQQGIIRDSYDADDAIEIWQTHTRYQEVEQMARLIRQEVAAGKHRYRDYLLMT 358

Query: 394  ADRNLARR-VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
             D       +     R+ I I +    P+S     + L  LL+          +  L+K 
Sbjct: 359  RDLGQYENIMPAVFARYEIPIFMDLDRPMSAHPLVAFLDKLLHLAPA-YTMTDVMGLLKT 417

Query: 453  PLAKFGFPEK-YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             L             A    E   L  N   +   D      DR A   ++       + 
Sbjct: 418  ELLIPDGVLLADYREALAETENYVLAKNIAGWQWTDKTPWQYDRQALTSDDEVTRERVAS 477

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI---SDWTKLTVTCLQNVCLDE 568
               +   +   +   +   +  L    T +       +        K  +    N  +++
Sbjct: 478  KDAQLAMIHDQISQTVAPFLHHLQQAPTAREMARELYNFITQIGIQKRLINWRDN-AIEQ 536

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                     E+  +   S+    ++             D+ T   D             +
Sbjct: 537  GDLWSAQQPEQVWRVFISILDDFVQVFDSEVMTLEVLQDVFTAAFDSAKYAGIPATMDQV 596

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA---------EK 679
             I  +   +   ++T+I+ G      P  T     L    ++ L              E+
Sbjct: 597  HISESGIVQRTGYETVIVFGATNHNLPAVTRIKAILHDGDRAILQPALPDNVFLKETSEQ 656

Query: 680  YIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLL----------------- 720
             + Q +     A     + LI+T +  + +     S ++ R+                  
Sbjct: 657  QMAQESLLMYRAMMVADQRLIWTYATSDGDGSQQPSTYVTRIQKQFQLPLVQFDALPDPM 716

Query: 721  ------------------VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY-------- 754
                              ++            GQ    W   +    K   Y        
Sbjct: 717  SHHVDDYVGTPTSTIAQIIIANRQAKQRGTVDGQLSAAWRNLIQQVQKIAPYQLQHLLGS 776

Query: 755  ---------KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                      +P     L       S S ++    +PY  + +  L+L      +     
Sbjct: 777  LHYQNEPEKLQPVLVNTLFGHDLKASISRLESYSRNPYEFFLQYGLRLQERQVLQ--LTP 834

Query: 806  TDRGTLFHNIITELI------KKRINKNTPEINHLMKQ-IIDSHFEKENL-------PPH 851
             ++GTL H ++ +L       ++ +   T +    ++Q I+      ++           
Sbjct: 835  AEKGTLMHAMLEQLFQTLVTKQQVLGALTDDQLRHLEQDILQGLLTSDDPTYDIFNSSSR 894

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEK--IFVNIPAKMA----------IESIGIHLT 899
            +  + + L  ++  + +  +           I V     +           +    + + 
Sbjct: 895  MRFLTQQLAIQVHETMISMKRGQLLDGGVHTIGVEAGFGLPQSQLKPVEYDMPFGRVKVR 954

Query: 900  GFADR---IDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLE-AAALKAGSFSQIDC 954
            G  DR   ++     F+ I DYK+         A   ++ QL     A L       +  
Sbjct: 955  GKVDRYDLVETNAGNFLTIVDYKSSKRVFDYSKAYAGLELQLMTYWTAMLMNKDV--LPA 1012

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014
             ++    +  L+  +            S ++L+  +L+ L       Q  EQ      R 
Sbjct: 1013 GEMGGALFWTLQNPW-----------ISMNDLTGDTLQQLQSAADK-QAIEQG-----RY 1055

Query: 1015 SEKSNIQSEY 1024
                    +Y
Sbjct: 1056 RGVLRTNDDY 1065


>gi|147678000|ref|YP_001212215.1| ATP-dependentnuclease subunitB [Pelotomaculum thermopropionicum SI]
 gi|251764609|sp|A5D1P4|ADDB_PELTS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|146274097|dbj|BAF59846.1| ATP-dependentnuclease subunitB [Pelotomaculum thermopropionicum SI]
          Length = 1157

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 134/1049 (12%), Positives = 278/1049 (26%), Gaps = 144/1049 (13%)

Query: 55   RAIQ-ELRSEFIEITGKKSTIL--PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE 111
            RA    +R E +        IL  P   +    +E    A   LS  +   V + +RL  
Sbjct: 16   RACLEAIRKELLARPYGPPLILLVPEQATFQ--IEYALAATPGLSGFIRARVLSFRRLA- 72

Query: 112  LARLILIWRNKLPDIIKDLYPESPLSLPISPAN-----------AIWLAKNLADIIDIIE 160
              R++          I +L     L   +                   A  LA  +  ++
Sbjct: 73   -YRVLREVGGAARAHIGELGKRMVLRRLLEQRRSELRVLGRSSGRPGFADTLARTLGEMK 131

Query: 161  TEEKKWEDLH----ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
            T     ++L      L+ +          + L        + L      +     + L+ 
Sbjct: 132  TYCIGPDELARAAFDLREKGGAALLADKLEDLAKLCFDLEDYLA--GRFTDPDDYLNLLA 189

Query: 217  AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
               E   +     + + G +G  P   R+++ +A   +   +    D          ++ 
Sbjct: 190  DCLELSAEVRGTEVWVDGFSGFTPQEYRVLAALARTASRVNITLCADP-------AALSG 242

Query: 277  KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF-LPPD 335
            K    +       T+ +     L + + ++R  +        +    S +    F  P  
Sbjct: 243  KIDETSLFFPVRETYDRLLKMALQERIPLERPLILGGNTARFKSPAISHLEKYFFVRPAP 302

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395
                 +  ++     N +     V           A  I    R      +    L+   
Sbjct: 303  PCLNCSEGVVLAAAANPKAEAEGV-----------AREITALCRDRGYRYRDIVILLRDV 351

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
             + A  +       GI + I    P+       ++ S L A+ +   F  +   +K  L 
Sbjct: 352  DSYAGLISSIFADHGIPVFIDQKRPVMHHPMVELVRSALEAVTEDWAFDPVFRYLKTDLV 411

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                 E  L           +RG++ +          L        N        +++  
Sbjct: 412  PLSREEVDLLENYVLAHG--IRGSRWTDGRPWEYRRELTLEEDPGLNGSESVELEKVNRI 469

Query: 516  DKELAVLLVDHILQCITP--LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
              +    L++     +    +    T   +    L + +  +      +     E  +  
Sbjct: 470  RHQATADLLEFCRSFMQAKNVREMSTALFNLLTGLKVPEQLESWSRQAEKEGRLEAAREH 529

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +L         ++L  +++E          E+  +I   ++   +         + +   
Sbjct: 530  SL----VWSGFTALLDQVVEALGDEVLEPGEYAAVIDAGLESLRLGLIPPGLDQVLVASL 585

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-------KYIGQAAH 686
              SR        + G+N+GV P  T      S + +  L     E       K+  +   
Sbjct: 586  ERSRNPEMRAAFVMGVNDGVLPARTFDQGIFSDLERERLKAAGLELAPGGRRKFFEEQYL 645

Query: 687  DFEMANGTRH-LIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL----- 739
             +     +   +  +  L +      + S  + R+  L                L     
Sbjct: 646  VYIALTRSSERIYLSYPLADGEGRALMPSPIVARVKELLPDVEERVWPVEPNAALLDDLE 705

Query: 740  -------------DWTRKLDYTTKQPHYK------------------------------- 755
                            R+     +                                    
Sbjct: 706  FVTGPRRTLSYLASQMREFKAGRRIDPLWWDVYSWFAAGEMREHCKRVLSGLFHSNREDR 765

Query: 756  -RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
              P     L  +P   S S +++    P+A +    LKL     F    D  D G  FH 
Sbjct: 766  LPPAVSMALYGRPLRASVSGLEKFRACPFAHFLSYGLKLKERAIF--KLDAPDLGRFFHA 823

Query: 815  IITELIKKRINKNTP----------EINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKI 863
             +     +   +             E+   +  ++      E L       +      + 
Sbjct: 824  ALKLFGDRVREQGLDWGQLDREQCQEMAGEVVDLLAPRLSSEILLSTARRRYLTGKLRRT 883

Query: 864  SHS--FLEHEEKIQSSIEKIFVNIPA--KMAIESIGIHL--------TGFADRIDLLKSG 911
                  +  E   +S    + + +       + +    L        +G  DRI+   S 
Sbjct: 884  VQRAALVLAEHSRRSKFRPVGLELSFGPDGDLPAPVFTLADGSEMAVSGRIDRIEAAPSD 943

Query: 912  F---VDITDYKTGDNPKK-ETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLK 966
                + I D+K+G    K       +  QL      AL+              + Y R+ 
Sbjct: 944  EGVYLRIIDFKSGKVTVKLTDIYHGLKLQLLAYLDVALEHARTLTGGNGLPGAVLYFRI- 1002

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLI 995
                   +  D      +E+  + LK L 
Sbjct: 1003 ---DDPLVNTDGPVPPGEEVEREILKKLR 1028


>gi|317470348|ref|ZP_07929739.1| ATP-dependent nuclease subunit B protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316902152|gb|EFV24075.1| ATP-dependent nuclease subunit B protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 1117

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 91/917 (9%), Positives = 235/917 (25%), Gaps = 120/917 (13%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNAS 205
                +          +   E L       +      L    + +  + + + + +    
Sbjct: 117 GFIDEMKSFFAETYQYDVSLEKLKEAVKSFENTDSLTLKMKDIVLVLEKFEDYMKDRYLV 176

Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                 + ++  +     K     I I G TG  P   +++  +  +    +    +D  
Sbjct: 177 --SEQLLDVLAQKITESEKLKGATIYIDGFTGFTPIQNKVLKKLLPYAKKIVAAFTIDEK 234

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +      +                 L ++     +       L   +        
Sbjct: 235 RAGGPYRDYELFAMPKKEI---------SQLKEMAVRQGVPILPDVILHPNAAGSKELRH 285

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
           +    F  P                  +    D+ +    N +EE+  I   +   + + 
Sbjct: 286 LEQNLFRYPFHV--------------YRGKTKDIRVCCLKNPKEESRYILGCIEHLVRKE 331

Query: 386 K---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
               K   ++T D    +          GI   I     L        + S L  I    
Sbjct: 332 GYRYKDLVVLTGDMETYQPELEKCFEDSGIPCFIDGNRALRNNPCVETILSALKMIQMDF 391

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
            +  +   +K   +     E  L         +      N        +    +   Q  
Sbjct: 392 SYEMVFRYLKSGFSALEPEETDLLENFVIASGIRGYARWNRPFKSRAFTKEEMKQINQSR 451

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
            T +        E  ++  + +++ +       +T                   L +   
Sbjct: 452 ETFM-KETGPFKEGIRKRGITVLERLTHLHGFFLTLDIQGQMERKKEEFEAAGDLAMA-- 508

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                          +++    + ++  ++ E     + +  E+  ++   +   TV   
Sbjct: 509 -------------KTYDQIYGEVLNIMDQMAEILGEEELSFDEFCAVLETGLSEMTVGVI 555

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------NLK 675
                 + +     +R+     L   G+NEGV PK +     ++   + +L         
Sbjct: 556 PPGLDQVIVGDIERTRVEGVKVLFFAGINEGVVPKPSKGGGLVTDSQREELLKAGISLAP 615

Query: 676 TAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLK 732
            A        +   +A       L  T +  +++  +   S  + R+  L      D   
Sbjct: 616 GAANQAYMEQYYLYLAMSKPDEKLYLTYASMDSSGESKAPSYLIGRIEKLFPGLKKDLDL 675

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY---------------------- 770
           +    Y     +  +  K   +   KP   + A                           
Sbjct: 676 QETPVYSVSEARERFVEKLQEFGEEKPDQEMAALYEVLNERKLVSPYLDAYFYSNEEKNL 735

Query: 771 ---------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                          S + +++     +A + +  L+L        +    D G +FH  
Sbjct: 736 DRHLTTLLYGKELENSVTRVEKFSGCAFAHFLQYGLRLRER--LVHEILPMDMGQVFHRT 793

Query: 816 ITELIKKRINKNTPEIN--HLMKQIIDSHFEKENL------PPHIDIIWRHLFHKISHS- 866
           +  + ++       +      +  +++   +++            +   +    +++   
Sbjct: 794 LQFVGQEGSWDWEDDRERDRFVDSMVERALDEDPDKKEIFESSSRNQYTKERIRRMAKRA 853

Query: 867 -FLEHEEKIQSSIEKIFVNIPAKMAI----------ESIGIHLTGFADRIDLLKSGF--- 912
            +   ++  +         +                +   +  TG  DR+D  +      
Sbjct: 854 VWAVEQQIKRGEFTPYEYELGFSADDGLSCANLSLKDGTKMKFTGVIDRVDCYEDEENLY 913

Query: 913 VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQKF 969
           + I DYK+G+           +  QL +   A+      +   ++   A +FY  +    
Sbjct: 914 LKIIDYKSGNMQFDFTKILNGLQVQLVVYMNAILELEGKKYPEKRMVPAGMFYFHVDDPV 973

Query: 970 KIDCITNDKKKYSADEL 986
                  + +      L
Sbjct: 974 IAPKTDREPEIEVLKNL 990


>gi|126652434|ref|ZP_01724606.1| ATP-dependent nuclease, subunit B [Bacillus sp. B14905]
 gi|126590705|gb|EAZ84820.1| ATP-dependent nuclease, subunit B [Bacillus sp. B14905]
          Length = 1169

 Score =  192 bits (486), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/968 (12%), Positives = 246/968 (25%), Gaps = 138/968 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA----LKNEKYGMWWLLAADFLKIA 191
             SL    A      + +  ++            L      LK            + L + 
Sbjct: 107  FSLFRQAAGKRGFTEEIETLLKEFSRYSVNSSVLAEVTESLKAIDAPNTLQAKTNDLHVV 166

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +   ERL      S       ++  + ++     +  I I G T        L+  +  
Sbjct: 167  LQALEERLGTTYVDSEG--YYPILTEQLKYAETMKQATIYIDGFTAFTVRELELVRELLK 224

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                  V+           ++ I E        +    T+    L  + +   I  E   
Sbjct: 225  VTKQVTVVL---------PFDHIDEAFDEQALFHEAALTN--QRLHDIANEEGIDVEAPL 273

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                                               N +P  +K   DV + EA N R E 
Sbjct: 274  HFYYT--------------QRFQSEDLQHVEANFGNMVPQTKKTSGDVMVFEASNRRAEV 319

Query: 372  ISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHS 427
             +IA  +     E+    +   L+     L   +      ++ I I  +    +      
Sbjct: 320  HAIAREITKLTREDGYRYQDIVLLYRQAELYDPLITSIFQQYEIPIFTNTKKTMLHHPLI 379

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIM 486
             +  S L  +     +  +   VK  L      E        + LE   L          
Sbjct: 380  ELSRSALEIMTSNWKYEPVFRSVKTDLFFPLQAELTIWRERADRLENYCLAQGIYGERWF 439

Query: 487  DLKSLVLDRIATQKNNTHVP-HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
            +       +    + ++ V    +  +  E + +   +   + +    L    T K+   
Sbjct: 440  EEARWFYKKYRGLEFHSRVQTDEERAMQAEIEAIRDEIRQPLKEFQDKLSIAPTGKDVAT 499

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLP--NLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                + +  ++          +  R         E+      ++  + +      + +  
Sbjct: 500  ALFELVESLQVYEKLQAMKDRELERGDALAASEHEQAWNEWINVLDQFVYMFGEQEMSVE 559

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
            E   I+    D             + +     +RL N     + G+N+GV+P        
Sbjct: 560  EAAKILDEGFDTLEFSRIPPTLDEVMVATVDLARLSNIKVGFVLGMNDGVYPTRMEYEGL 619

Query: 664  LSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIPTIASRW 715
            LS   +   +        T+   + Q    F  A  T    L  T    +     + S  
Sbjct: 620  LSDTEREWFSQIGYELAPTSSNRLLQENFLFYRAATTPSDKLYLTYPTADEEGKALLSSL 679

Query: 716  LQ--------------------------RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
                                         LL      +  + +      +   R+ +++ 
Sbjct: 680  YIKKFIGNDQTAGLLSGIQAERVVMDPIELLDGNALPYLRHPRTALAHLMVQLRQAEHSR 739

Query: 750  KQPHYKRPKPFPPLEAQPRTY---------------------------------SFSEIK 776
            +             +                                       S S I+
Sbjct: 740  ELAPEWLALQKFYQQDPYWALIFDRVHYPITHKNEAQPLETYITQELYGKKLTSSVSRIE 799

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN---H 833
            +    P++ +    L+L+     +   +    G LFH  +  + ++        I     
Sbjct: 800  KYFRCPFSHFTTYGLRLEER--AEYRLETFAMGDLFHEALKWITEETHRLQLSWIRLTKQ 857

Query: 834  LMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFV 883
             +KQ+     E+                   +    +I    +    +    S  + I +
Sbjct: 858  QIKQLARQAVEQIVPVFSHQILLSSARYRYIQRKLIRIVERTMMALTQHANVSHFKPIAI 917

Query: 884  NIPAKM----AIESIGIHL--------TGFADRID---LLKSGFVDITDYKTGDNP-KKE 927
                       +  + I L         G  DRID   +    ++ I DYK+        
Sbjct: 918  EASFGPGQHEQLPPLEIDLTSGKKMFMRGRIDRIDSATIDDRSYLRIVDYKSSARDLDLN 977

Query: 928  TAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
                 +  Q+      A++  S+      + A + Y+ +              +   D L
Sbjct: 978  EVYYGLSLQVLTYLDVAMENSSYWLPGETEPAGVLYVHVHNPMLKLDKDMTDSEIEEDRL 1037

Query: 987  SEKSLKNL 994
             +  +K L
Sbjct: 1038 KQYKMKGL 1045


>gi|332637523|ref|ZP_08416386.1| ATP-dependent helicase/deoxyribonuclease subunit B [Weissella cibaria
            KACC 11862]
          Length = 1182

 Score =  192 bits (486), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 102/946 (10%), Positives = 240/946 (25%), Gaps = 120/946 (12%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEK-YGMWWLLAADFLKIASKYWTERLVELNAS 205
                  A  I  ++     W+++  + +         +    L +  +   + L   N  
Sbjct: 125  GFISQFASQILELKQAGLSWQEVRDMADALTQQGTLQMKLHDLALIGEALDQELATRNQY 184

Query: 206  SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                   AL    A      +     I G +        ++  +     G  +    D  
Sbjct: 185  LSSQLLAALRVYLATEKTDVSHHYYFINGYSQMTTPERGVVEALIERAGGVTIALPADD- 243

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                         +   ++ +       Y   +L   L     D +     S+    R +
Sbjct: 244  ------------GSASVTAESLSENDLFYRPKRLAQQLRQFATDHQVAVTASSVTMQRPV 291

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD-- 383
              + + +          +    K         D+A+ +A    +E   +A  +R  +   
Sbjct: 292  SETITTVESF---WIAYEQEGVKPNGQTPTPKDLAIWQATTRYQEIEQMARMIRQEVASG 348

Query: 384  -ENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                +   L+T D      +      R+ I + +    P++     + L  L        
Sbjct: 349  KRRYRDFMLMTRDLGQYENMLPAVFARYQIPVFMDLDRPMAAHPLVAFLDKLFRLAPA-Y 407

Query: 442  DFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
                +  L+K  L             A    E   L  N   +   D +    DR     
Sbjct: 408  TIADVMGLLKTELLIPEDVTVAEYREALAETENYVLAKNTPGWRWTDKQPWQFDRNVADS 467

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
            ++  +    +    +   +   +   +   +  L      +              +    
Sbjct: 468  DDEVLREHVAEKDAQLALIHDQISTVVAPFLADLAQAPDAREMARRLYLFLTEIGMQQRL 527

Query: 561  LQN--VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
            L      + +         E+  +T   +    +           E  +++    D    
Sbjct: 528  LAWRDEAIAQGDLWTAQQPEQVWRTFIGVLDDFVTVFDHTPMTIAELQELLKAAFDSAKY 587

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                     + +  +   +   + T+I+ G      P  T     L    +  L  +  E
Sbjct: 588  TGIPATMDQVRVSESGIVQRQGYHTVIVFGATSVNLPATTRTKALLHDGDREILQDRLPE 647

Query: 679  KYIGQAA-----------HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL-------- 719
                +                 M      LI+  +  +       S ++ RL        
Sbjct: 648  HAFLRETSEQQMAQESLLMYSAMMTAADRLIWLYATSDGEGSQQPSTYVTRLMKQFNVPV 707

Query: 720  --------------------------------LVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                                                       L    Q       ++  
Sbjct: 708  RHFAALPDPNTMRIGDYVGTVDSTLAHLVSVNRQAANQQPAGTLSSAWQTLQQQVSQMAP 767

Query: 748  TTKQP----HYKRPKPFPPLEAQPRTY-------SFSEIKQLINDPYAVYARRILKLDFI 796
                        R +P   L +            S S ++    +P+  + +  L+L   
Sbjct: 768  DKTARVMGGLTYRNEPQQILASLMSQLFSNDLKVSISRLENYAKNPFEFFLQYGLRLKER 827

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKN--------------TPEINHLMKQIIDSH 842
               +      ++GTL H I+ +L  + I ++                 I + + +  D+ 
Sbjct: 828  QVLQ--LTPAEKGTLMHTILEQLFAELIRQDKTLSELTDSELENLERNILNGLLRSGDAT 885

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK--IFVNIPAKM----------A 890
            F+  +    +  + + L  ++  + L  +           + V     +           
Sbjct: 886  FDIFSSSARMTFLTQRLAAQVHDTVLNMKRGQLVDGGVHTLGVEAGFGLPQSKLKPVQYE 945

Query: 891  IESIGIHLTGFADR--IDLLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKA 946
            +    + + G  DR  +    +G    I DYK+G        A   ++ QL     A+ A
Sbjct: 946  LPLGKVTVRGKVDRYDLVETPTGNFLTIVDYKSGKRTFDYTQAFAGLELQLMTYWTAMLA 1005

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
             + + +   ++    +  L+  +                 ++ +  
Sbjct: 1006 NA-TVLPPSEMGGAVFWSLQNPWIKVKDIAGDTLAELQTQADVAAA 1050


>gi|46908501|ref|YP_014890.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes serotype 4b
            str. F2365]
 gi|81565412|sp|Q71X98|ADDB_LISMF RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|46881773|gb|AAT05067.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes serotype 4b
            str. F2365]
          Length = 1157

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 124/965 (12%), Positives = 276/965 (28%), Gaps = 124/965 (12%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L     L +     +       LA++   ++ EE   ED+                  
Sbjct: 97   AALDQRDKLKIFSRATSRKGFYAELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKIHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + I  + + E L   +        + L+  +        +  I+I G T        ++ 
Sbjct: 156  ISIIYQKYEELLA--DKFLENEDYLRLLAEKITESDYLNQTEIVIDGFTSFSQQELTVIG 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   V   L+      I + + E S    S+         Y+L +L     I  
Sbjct: 214  ALMRKCDKVTVSLALNV---PEIKHGLDEYSMFKASTEAY------YALLELAKLNSINV 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K               ++ ++        +                 ++++ +A+N 
Sbjct: 265  EEDKFFLENKRAKTESLAFLANAWGHNKFMAFKEE-------------PHNLSVHQANNR 311

Query: 368  REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   +A  +R       +    A++T +  +     +  +  + I I I     +S  
Sbjct: 312  RAEIEGVAREIRQLTLNGYRYQDMAILTRNLGDYDVLCETVMESYNIPIFIDKKRAMSKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         +  + R   + LE   L     + 
Sbjct: 372  PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLRRKADILENYVLENGIQNK 431

Query: 484  DIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNK 541
               + +   +  +I     N          ++        L+ + L  +   L   KT  
Sbjct: 432  WKWEKEGDWIYRKIRGLSTNVLPQTDGEIQTQSIINEMRSLIVNPLSTLELNLKKAKTGM 491

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599
                      +               E +    L    E+    +S+L  + +E      
Sbjct: 492  EFALALYHFLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSAISALLDEFVEVLGKET 551

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   +++II   +D             + +     ++LL+   +   G+N+GV P    
Sbjct: 552  LDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611

Query: 660  KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI 711
             N  LS   +  L         +A+  IG+            +  L  +    +     +
Sbjct: 612  DNGILSDQDRDALRAEVSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671

Query: 712  -----------------ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                              S +L    +L   +    ++ +       T +L    +    
Sbjct: 672  SESNYLRKIKGQFKKLSESVYLTDPGLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPL 731

Query: 755  ------------------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778
                                                 + K    L  +    S S +++ 
Sbjct: 732  SSVWWDAYNSYFENGKESRMAKQVLSSLYYENKTKPLQEKTAKNLFGETIHASVSRMEKF 791

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829
             +  +  +A+  LKL+   HF+      D G +FH  +  +  +    N           
Sbjct: 792  FSCEFQHFAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGSLTDQEC 849

Query: 830  -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885
             ++  L    +    + E L         ++   +I      + +E+   S+   + + +
Sbjct: 850  RQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909

Query: 886  PAKMAIESIGIHLT----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQK 931
               +  +   + ++          G  DRID+ +      + I DYK+  +         
Sbjct: 910  DFGLKGDIPPLKISLQANSELLLQGRIDRIDMAEQEDRTFLRIIDYKSSSHDLALTEVYY 969

Query: 932  LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  Q+      +   +   I    + A + Y  +  ++         +    +      
Sbjct: 970  GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIVKELQKNSK 1029

Query: 991  LKNLI 995
            +K LI
Sbjct: 1030 MKGLI 1034


>gi|308177922|ref|YP_003917328.1| ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745385|emb|CBT76357.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117]
          Length = 1070

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 134/1035 (12%), Positives = 271/1035 (26%), Gaps = 133/1035 (12%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
              L++         L   S+ I  PT+     +R E      +++   P++++      +
Sbjct: 40   HLLIDTAVAHLDAGLDPQSLLIIGPTRLTAASIRDELSRR-AQRTFTEPVVRTWSSYAFD 98

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL-YPESPLSLPISPANAI 146
                       L P +    RLL       +  + L      L       +         
Sbjct: 99   LIRR--ARVEGLLPQLERAPRLLSGPEQDTLIGHLLEGHSAGLTEGPQWPTELELAVETR 156

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
               K + +  D +     +  D+  L  +     W  AA F +         L    A  
Sbjct: 157  GFRKEIREFFDRVSELGLEPADIADLGQQAKRPEWHAAALFYQEYRDLLD--LGSAEAFD 214

Query: 207  PVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
            P G      +   E     H  +     I++     +  +  RL+S +        ++  
Sbjct: 215  PAGLITRAAQILEENQGFLHEEQDRMALILVDDLQEATLSQHRLLSLLGKDRA---MVAF 271

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                     +        +  + N  ++T  + S  +L   L +  +  +    + + + 
Sbjct: 272  AAPDSVVQGFRGARTDELHRFAQNYAHTT--EASFMELTGGLRMSPQITEAWKRIVSRVP 329

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
              + +  ++    +TS+                       +  +N   E   IA  +   
Sbjct: 330  LAAGLRGRTIEALNTSEHELCQA-----------------LVFENSTLEERFIAQRIVHL 372

Query: 382  LDENKK---KSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHSSILTSLLNAI 437
                 +     A++  + +  R     L   GI +    A IPL        L  LL+  
Sbjct: 373  NLYENRSLADIAIVVRNGSQVRSFSRFLEGQGIGVQVPPAEIPLKDEGAVRPLLDLLDLA 432

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
            F  +       +    L+++G       R    L               +L    L   A
Sbjct: 433  FSDSLTDDPLLMQNLLLSRYGMSTALEIRRIRQLLRQQEAEAGGRRSSQELLETCLREPA 492

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                         RL      L   L        T L                       
Sbjct: 493  LADKLGKPGFGLKRLLSMYGALQEELNSGTATPETALWAMWEASGRAKAWR--------- 543

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               L                    +       ++         +      I+ + +  ++
Sbjct: 544  EEALGTGTAARRADHDLDAVLSLFQAAERFVDQLPGASVKQFID-----HILHQDLPMDS 598

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            +  +     T+ +L T  +    +  + + GL EG WP    +   L     +D      
Sbjct: 599  LATRAAGGQTVTVLTTAAAAGKQWPVVFIPGLQEGSWPNLRLRGELLGSNALADAAEHGI 658

Query: 678  EKYIGQAAHDFEMANGTRHL-----IYTRSLRE------NNIPTIASRWLQRLLVLGGTD 726
            +    +             L       +R+  +      +N  +  S +L  +       
Sbjct: 659  DFLATRTPTHLVRQIRNDELRSFSNAVSRAQDQLICTAVDNEDSQPSSFLDLVEPPCPEG 718

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP------------------------ 762
                   R +       +L  T ++         P                         
Sbjct: 719  REPTAVPRIRSLPALVAELRSTAEKAKAASLGAVPAPADVEAHSLYQDAVHVLGRLAHAE 778

Query: 763  ------------------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                                     E QPR  S S+++ L+  P   + +          
Sbjct: 779  QPVRGAHPSSWWGLSPVTTTEPVIPEDQPRRVSPSKVETLVKSPLNWFVQSAGGTAAHDF 838

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
                      GTL H+I  E        +  E   +++Q      EK             
Sbjct: 839  ------AASLGTLIHSIAEE----HPEASGSEYERILEQRWPE-LEKLENWEGQR--DFD 885

Query: 859  LFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIESIG---IHLTGFADRIDLLKSGFVD 914
              + +   F  +     Q   E +   +P ++ + +     I L G  DR++   +G V 
Sbjct: 886  RANGMLRKFAAYCVTMRQEGRELVAREMPFQVEVPAADGSHIQLRGIIDRVEADANGKVR 945

Query: 915  ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID-----CRKVANLFYIRLKQKF 969
            + D KTG +   +    L   QL +   A++ G+  + +       + A    + +    
Sbjct: 946  VVDLKTGSSAPTKE-ATLEHLQLGVYQTAIQLGALQEHEETAGLPDEPAGASLVYVGTNT 1004

Query: 970  KIDCITNDKKKYSAD 984
            K   +         D
Sbjct: 1005 KSASVREQPSIGDED 1019


>gi|145589487|ref|YP_001156084.1| hypothetical protein Pnuc_1306 [Polynucleobacter necessarius subsp.
            asymbioticus QLW-P1DMWA-1]
 gi|145047893|gb|ABP34520.1| DNA helicase/exodeoxyribonuclease V, subunit B [Polynucleobacter
            necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 994

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 156/1080 (14%), Positives = 308/1080 (28%), Gaps = 145/1080 (13%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
             ++P  + I P++   +E+   + N  +  N R             + + T   +  +R 
Sbjct: 11   QQQPYSWAITPNAGALKELANGIWNCAVQTNQRP-----------LVVLSTAGPLMGVRR 59

Query: 63   EFI----EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118
                            LP + S  D +E         ++      S+++R L        
Sbjct: 60   ALEVYRPADLPNHLAFLPQVISFQDWLE-----AAPGAWKFPKKQSDLERWL-------- 106

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
                +   ++            S   A  LA+ +    D +                   
Sbjct: 107  ---GVYSTLRKHPDLQAWFKAESETGAWGLAQAIVKACDTLSKA--------------VS 149

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238
                     + +  + +     + N    V  +      +A                   
Sbjct: 150  PHLQ---KQIHVFMQQYESDQDQQNKIGEVWGREVQTLLDATIQEAYRG----------- 195

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
                      V    N  +        +    +      + ++ +     + H Q     
Sbjct: 196  -----MARKVVDQEANVLLTFWRYTASVSDPAFRNQFAIAAHLHALAQAQAVH-QARPLI 249

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI-----Q 353
             ++  D    D + + ++ ++    +  I                   +K          
Sbjct: 250  WVETADPTPIDQEIIADLLHQYAQLAPAIEVKMDWSAVGLWPEAIQGGDKSTQAVQNVHH 309

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
                   L+ A    E A + A  +   L + K   AL+  DR +ARR +  L R G  +
Sbjct: 310  AQIEGWRLVSAKRFEELAWTAAKTIEQHLIDGKTNLALVAQDRLVARRARALLARLGPAL 369

Query: 414  DISA--GIPLSTTLHSSILTSLLNAIFKLNDFMA---IATLVKHPLAKFGFPEKYLSRAK 468
            +I+   G  LSTT  ++ L S L  I    D  +   +   +++P               
Sbjct: 370  NIADETGWKLSTTRAAAALNSWLELIQSPKDGPSVKVLLEFLQNPFLDIEKI------LN 423

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
               +       +    +M  K+                +     S       + L+  + 
Sbjct: 424  REKDFCIGLIAELEDILMASKAESGWTTFYLAIERAQQYAVKTASAIPSSALLELLQFVR 483

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
            +        K + N     L  +       T L+     +               +   F
Sbjct: 484  ERHHEWSKLKVDCNKAYKLLQANLQATGMATSLEKDSAGKQ-----------LLEVLKSF 532

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK-SSTLFILGTLESRLLNFDTLILG 647
                           EW+ +I  +++G + + +     + L IL    +RL  FD ++L 
Sbjct: 533  DLHRPDHQLTVMRLNEWLSLIKTVVEGASYQEEGGDARANLSILPLSSARLREFDAIVLV 592

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRE 705
            G +E   P  +    F S  +   L   T E    Q A D        ++  +  +S  +
Sbjct: 593  GCDEQQLPAYSEPPLFFSDALNQLLKTSTIEMQFVQQARDLSQLLVSCSQVDLLWQSKSK 652

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
            N  P   S W+QRL                  +   + ++     +P+          E 
Sbjct: 653  NGEPLRPSAWIQRLQ-------------SKVDWHALSPQIQKRVFEPNPIDMAVAHFEED 699

Query: 766  QPRTYS--FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
             P   S   S  K L + PY  Y R +L L  I    +  D +  G   H ++       
Sbjct: 700  LPMPLSMSPSAYKALRDCPYRYYVRSLLGLRKIKSVDEGFDASLAGQTLHQVLKSFYHSL 759

Query: 824  I-------------NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
                           +    +   +    +  F          +     + K   SF++ 
Sbjct: 760  KTEEHKNPNLKTQDEERHEWMEARLNMESEQEFAPLIEGDARVMGALRDWQKQIPSFIDW 819

Query: 871  EEKI-QSSIEKIFVNIPAKMAIESIG-------IHLTGFADRIDLLKSGF--VDITDYKT 920
            + +  Q+  +     +     +           I + GFADR D+         + DYK 
Sbjct: 820  QLQREQAGWQYFDGELKVGFDLPFADIDGNFKTIRIEGFADRFDIHIDDSKLASVIDYKN 879

Query: 921  GDNPKKETAQKLI--DPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQK--FKIDCIT 975
                + +   + +  DPQL + A AA ++    ++  R+V    ++ LK     +     
Sbjct: 880  QRFERVKQRAEHLLDDPQLLIYARAANESQENHKLLGRQVKQAEWVALKADLSKEAQKAA 939

Query: 976  NDKKKYSADELSEKSLKNLIEIVTLLQN--GEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033
              ++     E+  +    + E V  L +    Q F       E      E   + R   W
Sbjct: 940  RSQEVQEMPEMMMQFSAQITEDVQGLWSKKPMQAF-----APEGVCQYCEARGICRKGFW 994


>gi|304385835|ref|ZP_07368179.1| DNA helicase/exodeoxyribonuclease V, subunit B [Pediococcus
            acidilactici DSM 20284]
 gi|304328339|gb|EFL95561.1| DNA helicase/exodeoxyribonuclease V, subunit B [Pediococcus
            acidilactici DSM 20284]
          Length = 1187

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 119/1068 (11%), Positives = 292/1068 (27%), Gaps = 169/1068 (15%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTK---RAIQELRSEFIEIT 68
              S      +   ++     +  R               VP     ++  +L  +  E +
Sbjct: 9    PASVDHLDAVAETIIELQQQQKQRKIYY----------LVPNHIKFQSEIQLLQKLREKS 58

Query: 69   GK-KSTILP---IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
                         I S+  +         +  Y   P ++N    + L R+I+  +++L 
Sbjct: 59   DSAGPVFAQKDIQILSISRLAWFFLRNSSIYQY---PRLTNSSTSMLLYRIIVEHQDELL 115

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL----HALKNEKYGM- 179
                         L  +    + L + +   +   +      E+L      L   +    
Sbjct: 116  -------------LFHNIDAQLGLIQEITSQLAEFKQGNVSPENLSQIIDQLAENEDPQL 162

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
              +     L I    + E + +           AL    A+  M       +I+G +   
Sbjct: 163  DLMAKLHDLNIIYTAYDEAI-QQKFVDSSDILRALTDQLAK--MDLHAQSFVISGFSNFT 219

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
                 L+ T+       ++                         +         +   KL
Sbjct: 220  AEELNLIQTLIKANATVVI----------------DLVMERNPLNEKLSENSLFFENEKL 263

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
               ++    + +        +  + +      L           +      N  +  + V
Sbjct: 264  FFRINEWARENRIQVVSPRVVTKKRVNDDLRKLERYWVASTQGQLG----QNGHEQNNSV 319

Query: 360  ALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVK-LELTRFGINID 414
             ++E ++   E   +A A+R  +      N    +++T   +    +      +F I I 
Sbjct: 320  EVLEFNSRYAEVEHVATAIRQMMTKDDRLNFSDFSVLTRHLSDYDTIIKPIFDQFDIPIF 379

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK----YLSRAKNA 470
                + +       ++ +L +   +   +  +  L+K  L +             ++   
Sbjct: 380  YDMQVAMKNHPLLELINALFDVQKRHFRYEDVMRLLKTGLLRPENDADPDGKDFVKSVQI 439

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--RLSEEDKELAVLLVDHIL 528
             E   LR        +        R             +   R   E K+  V  V+   
Sbjct: 440  TENYVLRQGIYGSKWLQKAPWQYQRFNDVDMEQQTDEEREINRRINEIKDYVVKTVNPFF 499

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
              +           +    L  +   +  +        D +        E+  +T  ++ 
Sbjct: 500  NQLAVAENGAEAAKALYQFLIRNHVDQRLLAWRDQWIEDGNLAKAA-EPEQTWETFVTML 558

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
             + ++       ++  +I ++    +  T          + I  +   ++++   + + G
Sbjct: 559  DEFVDILGDQPFDSNNFIGLLNAGFENATYSQIPSTLDQVLISESGMVQMMDRKVVFIIG 618

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTA---------EKYIGQAAH--DFEMANGTRHL 697
              +   P+    N FLS+  ++ ++ + A         E+ + Q  +        G++ L
Sbjct: 619  ATDRAMPEQIQDNDFLSQEGKAQVSDQLADDQFLKMSNERQMRQEPYLNYLTFMIGSQRL 678

Query: 698  IYTRSLRE-NNIPTIASRWLQRLLVLGGTDFF---------------------------- 728
            I+T   R  +      S +++R+      +                              
Sbjct: 679  IFTYPKRGNDGTDFKLSPYVERIKAYFEIEVQCLPSRPAVDQPLIQPFIGSKRSTLSHLV 738

Query: 729  -------DNLKKRGQCYLDWTRKLDYTTKQPHYKR---------------PKPFPPLEAQ 766
                   ++ +     +      L+        +R               P     L   
Sbjct: 739  QYARSMKESKQPADVRWNLIYSILEAGRWHDLTERLMGSLSYKNVPRKLKPDIVTQLYGD 798

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
                S S++++   + Y+ + +  LKL        D    D G  FH  +  L+K     
Sbjct: 799  KIYASVSKLEEFFRNEYSYFLKYGLKLQERET--ADLSPADTGQYFHAAMDNLVKVITQA 856

Query: 827  NT---PEINHLMKQIIDSHFEKENLPPHIDII--------WRHLFHKISHSFLE--HEEK 873
            +          +KQ+     E        D           R+   +   + +    ++ 
Sbjct: 857  DLNFNEVNQTQIKQVTKRVLENMRQDSQFDQFNSTYRMGYLRNQLDRTVETMVTAIFKQL 916

Query: 874  IQSSIEKIFVNIPAK------------MAIES-IGIHLTGFADRIDLLK-SGF--VDITD 917
             Q+ +  I                     +     +++ G  DRID +   G   + + D
Sbjct: 917  AQTRMRPIASEQMFGQIGLKEGLPALNFKVNGKQEVNVRGKIDRIDKINIEGQPYLGVVD 976

Query: 918  YKTGDNP-KKETAQKLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962
            YK+         A   +  Q+ L    ++         +  ++++  Y
Sbjct: 977  YKSSTRKFDFADAYYGLAMQMLLYLDVVQQNRQRIDPHEQARLSSALY 1024


>gi|305679610|ref|ZP_07402420.1| phage prohead protease, HK97 family [Corynebacterium matruchotii ATCC
            14266]
 gi|305660230|gb|EFM49727.1| phage prohead protease, HK97 family [Corynebacterium matruchotii ATCC
            14266]
          Length = 1095

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 131/1060 (12%), Positives = 288/1060 (27%), Gaps = 147/1060 (13%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE---------------EKFT 90
             V     T++A Q+L     +  G+ + I P I +L                    + F 
Sbjct: 64   QVLGLTFTRKAAQQLGKRINDRLGQLAGI-PDIAALDPSGRLANRLRSAGPTTSTYDAFA 122

Query: 91   ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
              L+  + L  PV    R++    L  I    + +   +L         +     + L  
Sbjct: 123  GKLVGEFGLLLPVEPSSRIISQTELYRIAVQVVNEYEGELSMRHTTGHVVDT--LLTLTA 180

Query: 151  NLADII---DIIETEEKKWEDLHALKNEKYGMW---------WLLAA----DFLKIASKY 194
             L + +     ++ E   +  L                    W        + L + +K 
Sbjct: 181  ELDNHMVDERELKIESLLFAQLCEELPPAKRQRKKPNQKILGWQETQFHRIELLPLVTK- 239

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV 249
              +RL + N  +         R   E+       +     +++     +  A   L+ ++
Sbjct: 240  LKDRLKDENLVTFGEQMSLAARLAVENPSVGKVLRNRYKVVMLDEYQDTSHAQRMLLRSL 299

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 G  V    D       W   T  + N   ++      PQ            +   
Sbjct: 300  FA---GGAVTAVGDPMQSIYGWRGATAANLNRFVTDFAID--PQ------------EPAV 342

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
               L            + +        +       ++           D+ L       +
Sbjct: 343  KNELTISFRNPPEVLHLANAVATTVLGAPSDPNRPVQPLSSPPSAVAGDIQLGYFPTIAD 402

Query: 370  EAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            E   +A  L    +         +A++         +  E  R GI  +I     L    
Sbjct: 403  EREFVADTLAELYNNRDTAKPFTAAVLVRQNAHTGPIAKEFQRRGIPYEIVGINGLLDVP 462

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
              + + ++   + +  D  A   ++  P    G  +      + A EL     +  + D 
Sbjct: 463  EVADMVAVATMLIRPTDSAAALRILGGPAVGLGVRDIQALA-RRAGELSGRATSGKATDS 521

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT-YKTNKNST 544
            +D    + + IA               +  D        +   + +  L +  +  + + 
Sbjct: 522  VDPAVKLGEEIAEVLAADAENIVGLTDAIADLGEPEKYSEEGYRRLGRLSSQLRRLRQTV 581

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                S+ D        +        R+ P L        L  L  ++    +       +
Sbjct: 582  AAGSSLPDLFAEIERVMGIRTEVLSRENPRLDGAVGTIHLDKLHQEVANFATIPNTTLSQ 641

Query: 605  WIDIITRL---IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
             +D  T       G  +     ++  + IL   +++ L ++T+ +   N   + K  A  
Sbjct: 642  LLDYFTEARCQESGLELGEVQVRNDRVQILTVHKAKGLEWNTVCVLHANNRDYDKTRAST 701

Query: 662  PFLSRVM----------------------------QSDLNLKTAEKYIGQ--------AA 685
               +  M                            ++ L  + A                
Sbjct: 702  WLTNPAMVPSTLRGDAAESGDTVGSPVLDTSWLENRAQLEAECAAHIEEFRQSLSEESTR 761

Query: 686  HDFEMANGTRHLIYTRSLRENNIPTIA---SRWLQ-----------RLLVLGGTDFFDNL 731
              +         +   +   ++        S +L                       D  
Sbjct: 762  LFYVAVTRAAQRLIVTASALDDNERDTEPCSNFLLIKRNASTDSIVAWHDPAEAAATDTS 821

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
             +  +     T      TK                 ++          ND + ++ + + 
Sbjct: 822  DEPSEVQQSPTGMFPKPTKTVDLLTGADLVRKAIAQQSVGDPIAFNQDNDLFQLWEKDVT 881

Query: 792  KLDF----------IPHFKKDPDRTD----------RGTLFHNIITELIKKRINKNTPEI 831
             L                  +   TD                  +     +   + T   
Sbjct: 882  ALIEEYQRLQSDIVEVELSPELTATDIVALKQNPEQFARRQRRPVPFKPNRYAKRGTEFH 941

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
            + L ++        E+  P +D         ++   F+       +    +FV  P +++
Sbjct: 942  SWLEQRFGAPTLLDESELPGMDEEITPGQLQELKDKFVA---GQFADRTPMFVEQPFEVS 998

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            I+  GI + G  D +   +SG   I D+KTG  P +   + L+  QL++   A       
Sbjct: 999  ID--GIVIRGRMDAVFRDESG-WHIVDWKTGQLPSRADMRYLM-MQLAVYRIAWAQ--LQ 1052

Query: 951  QIDCRKV-ANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
             ID  ++ A+ +Y+R  +    D + ++++      L+ +
Sbjct: 1053 GIDPDEIHASFYYVRYDKLSSADNLPSEREIAETLRLAAQ 1092


>gi|261418925|ref|YP_003252607.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y412MC61]
 gi|319765742|ref|YP_004131243.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y412MC52]
 gi|261375382|gb|ACX78125.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y412MC61]
 gi|317110608|gb|ADU93100.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y412MC52]
          Length = 1172

 Score =  190 bits (483), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 128/960 (13%), Positives = 256/960 (26%), Gaps = 130/960 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI----- 190
            L L    A+     + L ++I   +       +L                  L       
Sbjct: 112  LKLFGRAADKHGFIEQLNEMIAECKRYCLTPGELRRHAEAFEDGPSQPGRRLLADKLSDV 171

Query: 191  --ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
                +     L  +         + L+              I I G     P    ++  
Sbjct: 172  ALVYEELERSL--IGHYLDSEDYLRLLAEHIPRSSYLRDADIYIDGFHHFAPQEYMIIEQ 229

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +  H     V   +D                 +        T+ Q     L + + I   
Sbjct: 230  LLLHCRRVTVCLTIDRPYD-------DGMPDELHLFYLPAQTYRQLRELALSNDIAI--- 279

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
            +   + + +     R++V  ++                  +         V L EA N R
Sbjct: 280  EEPIVLSANRRHEDRALVHLEA------------QFHRRPLLPYGAKTDAVHLYEASNRR 327

Query: 369  EEAISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTT 424
             E  ++A  +   + +     +  ALI       R  VK     FGI   +    P+   
Sbjct: 328  AEIEAVAREIIRLVRDEGARYRDIALIIRQTEAYRDLVKTVFFDFGIPYFMDEKEPMHHH 387

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483
                ++ + L  +     + A+   VK  L      + +    A + LE   L       
Sbjct: 388  PLIELVRAALETVVTRWRYEAVFRAVKTDLLFPTDGDLHMWREAADKLENYVLAYGIKGD 447

Query: 484  DIMDLKSLVLDR-IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
               + +     R  A    N      + +  +   E    L   + +    L   +  + 
Sbjct: 448  KWTNNERWAYRRYQALDGLNVPQTDEERQFEDMLNEWREALAAPLRRLERRLRRAEDGRG 507

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKL--PNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                     +  ++     +     E           E+    +  L  + +E       
Sbjct: 508  FCMALYLFLEELQIPKKLEKMSAQAEADGRLVEARQHEQAWNAVVDLLDQYVEMLGAESL 567

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
               E++ II   +D             + +     SRL++     + G N+GV P    +
Sbjct: 568  PLAEFVKIIEAGLDRLEFSLVPPAMDQVIVAQLDRSRLIDIKYAFVIGANDGVIPAKVKE 627

Query: 661  NPFLSRVMQ---SDLNLKTAEKYIGQAAHD-----FEMANGTRHLIYTRSLREN-NIPTI 711
            +  ++ V +    +L +  A     Q  +D       +   +R L  T  L +      +
Sbjct: 628  DGLMAEVEREQLRELGVALAPGGREQLFYDPFFVYLALVCPSRRLYVTYPLADGEGKALM 687

Query: 712  ASRWLQRLLVLGGTDFFD------------------NLKKRGQCYL-------------- 739
             S  +++L  L                            +  Q YL              
Sbjct: 688  PSPLIKQLTELFPHAPVHLCGNDPFDAPAEKAEAFVTAPRATQTYLISQLRAWKRNYGID 747

Query: 740  --------------DWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIKQLI 779
                          DW  ++ +      Y              L  +    S S ++Q  
Sbjct: 748  PLWWDVYNTFIGHRDWKEQVRHAVSALFYTNGATPLKKQWSQRLYGKKIQASVSRMEQFQ 807

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTP 829
              PYA +A   L+L     F+   +  D G LFH  I ++           ++    +  
Sbjct: 808  KCPYAHFASHGLRLKERNVFR--LEAPDVGQLFHAAIKQIADRLREQHLDWRELSRPDCE 865

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHL-FHKISHSF--LEHEEKIQSSIEKIFVNIP 886
             ++    + I    +++ L       +       +      +  E    S    I + + 
Sbjct: 866  RLSAEAVERIAPLIQQQVLSSSHRYEYMKRKLKHVVARTTHVLSEHARASGFVPIGLELS 925

Query: 887  A---------KMAIESIGI-HLTGFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKL 932
                      +  +    +  L G  DR+D  +S     + I DYK+             
Sbjct: 926  FGPNGDLPPLRFRLPDGTVMELVGRIDRVDKAESSQGVLLRIIDYKSSAKTLDLTEVYYG 985

Query: 933  IDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
            +  Q+      +   +   +      A + Y  +           D +   A +L E   
Sbjct: 986  LALQMLTYLDIVLTYAEQLVGQPALPAGVLYFHIHNPIVQAKQWVDDEVEMAKKLLEPFR 1045


>gi|317153566|ref|YP_004121614.1| hypothetical protein Daes_1856 [Desulfovibrio aespoeensis Aspo-2]
 gi|316943817|gb|ADU62868.1| hypothetical protein Daes_1856 [Desulfovibrio aespoeensis Aspo-2]
          Length = 966

 Score =  190 bits (483), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 156/1070 (14%), Positives = 313/1070 (29%), Gaps = 167/1070 (15%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
            +V  I   + F   +   L                   + +T+  P  R  + L++   +
Sbjct: 3    HVTLIPWQADFIPALGRLL-------------AGRDDFSDLTVLFPHNRPRRYLKAFLRD 49

Query: 67   ITG-KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125
             T   +   LP + S+ D       A L    +  P V    R L+L  ++      L  
Sbjct: 50   HTALPRPVFLPRMVSIADF-----VAGLRRDLSDQPVV--QARQLDLVEMLRTVVADLRR 102

Query: 126  IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
              + L                                      L  +  E +  W +  A
Sbjct: 103  DGRGL-----------------------------------LARLPEMDREAFLPWGIRLA 127

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
                   +  T+          V    A +  +   +       +   G T         
Sbjct: 128  RLADDILRQDTDPDDLAYMDGEVSPYAAALLEQLSAIHHAYVTRLFARGWTTPGLDWRFA 187

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
               +A            D  +  A +  ++     +                        
Sbjct: 188  TRNIAQVAG-----HLADTPMVAAGFYALSGAEDTLFRRLWED----------------- 225

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD---VALI 362
                   L  V +     +      +   + +   +   ++  IP  +        +   
Sbjct: 226  -----DILHPVIHSDPALATGEEPHWSTAEHTAWLHRWRVKAVIPPGEDVPLSGPVIRFC 280

Query: 363  EADNEREEAISIAIALRMSLDEN--KKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            E  +   +  ++A  +R ++        +A+I  D      V   L     + +IS G P
Sbjct: 281  EGFDRHSQLAAMADDMREAMAAGSGLDDTAVILPDEGALMPVLHHLPE--DDPNISMGYP 338

Query: 421  LSTTLHSSILTSLLNAIFKL-----NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            L  T  + ++ ++L             +  +  L++HP  +   PE    R    +   A
Sbjct: 339  LERTALARLVETILTLQENRLGDGRYHWRDVVALIRHPYLRLLGPEHKPLRTLFQVWEAA 398

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            +R  +   D +  +    D I    + +             + L   ++ H L    P+ 
Sbjct: 399  IRRGERHIDPLAWEPPYADEILDSVDQS-----------VAEPLRRAVLHHCLTAFEPVA 447

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
            +     ++  G   ++         L +  L +   L  L       T S +        
Sbjct: 448  SLDDLGDALAG---LAAMLHAHGERLWHTYLVDAECLFRL-------TTSVVPQLRGAEA 497

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
            S +  +      ++  +I  E V  + E  + L +LG LE+RLL+F  L +    E   P
Sbjct: 498  SPLPLSQPVLFSMLRSMIGQERVSFEPEPLAGLQVLGVLETRLLHFRRLFILDAVEERLP 557

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLREN----NIPT 710
                 +P L   ++  L L  A +    + ++F     G R  +            +  +
Sbjct: 558  GTNPFDPLLPDPLRRLLGLPDARQRDHVSGYNFHRLLMGAREAVVYYQSGIQPGLLDQKS 617

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA----- 765
            + SR++++LL          L + G   +        T        P      EA     
Sbjct: 618  VRSRFVEQLLWE-REKREGRLTEPGDPRIRIVTFPAGTVPTGPAPIPATQAVREALLRTL 676

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
            + R  S S + + +N P   Y   +  +  +    ++ DR++ G+L H+++ E +   I 
Sbjct: 677  ETRGLSPSSLDRYLNCPKLFYYASLSGVRPVDEIAEEGDRSEFGSLIHDVLREFLTPHIG 736

Query: 826  KNTP---EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
              T         +  + +   +   L   + +  R          L    + Q       
Sbjct: 737  VGTDLGSLDPAPLVALYEERLKTSELFRQLPVDTRMALLMTGRHRLRAFVESQEPATLTG 796

Query: 883  VNIPAKMAIESIGIHL--TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP----- 935
            +    +  +E+ G+ +  TGF DRI+    G + I DYKTG     +      DP     
Sbjct: 797  LEQRLETTLETDGMTIGFTGFLDRIERRSEG-IMILDYKTGGVTVPKKTFWGDDPLWARV 855

Query: 936  -----------------------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
                                   QL              +      +   I+L +  +I+
Sbjct: 856  AHYDPAAPDPLLLTDLSASLRSVQLPAYLYLYSR-----VHGEIPHDAGLIKLAEDGRIE 910

Query: 973  CITNDKKKYS-ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
             +   K       E+ E+ + +L+  +     G   F +           
Sbjct: 911  RLFGPKWPDDHRSEIVEEMIPHLLATLVRHMTGAAEFPAQPGRQCDWCAF 960


>gi|299535965|ref|ZP_07049284.1| ATP-dependent nuclease subunit B [Lysinibacillus fusiformis ZC1]
 gi|298728570|gb|EFI69126.1| ATP-dependent nuclease subunit B [Lysinibacillus fusiformis ZC1]
          Length = 1169

 Score =  190 bits (483), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 115/968 (11%), Positives = 250/968 (25%), Gaps = 138/968 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA----LKNEKYGMWWLLAADFLKIA 191
             SL    A      + +  ++            L      LK           A+ L + 
Sbjct: 107  FSLFRQAAGKRGFTEEIETLLREFSRYSVNSSVLAEVTESLKAIDAPNTLQAKANDLHVV 166

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +   ERL      S       ++    ++     +  I I G T        L+  +  
Sbjct: 167  LQALEERLGTTYVDSEG--YYPILTEHLKYAETMKRATIYIDGFTAFTVRELELVRELLK 224

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                  V    D          +  ++                 L  +     I  E   
Sbjct: 225  VTKQVTVALPFDHIDEAYDEQALFHEAALTN-----------QRLHDIAKEEGIDVELPL 273

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                       R        +    +D+          P  +K   DV ++EA N R E 
Sbjct: 274  HFY-----KTQRFHSKDLQHVEAKFADLE---------PQTKKTSGDVTVLEASNRRAEV 319

Query: 372  ISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHS 427
             +IA  +     E+    +   L+    +L   +      ++ I I  +    +      
Sbjct: 320  HAIAREITKLTREDGFRYQDIVLLYRQADLYDPLITSIFQQYEIPIFTNTKKTMLHHPLI 379

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIM 486
             +  S L  +     +  +   VK  L      E        + LE   L          
Sbjct: 380  ELSRSALEVMTSNWKYEPVFRGVKTDLFFPLQAELTIWRERADRLENYCLAQGIYGERWF 439

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTC 545
            +       +    + ++ V   + R  + + E     +   L+ +   L + K  ++   
Sbjct: 440  EEARWFYKKYRGLEFHSRVQTDEERAMQAEIEAIRDEIRQPLKLLQDKLDSAKNGRDIAT 499

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLP--NLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                + +  ++          +  R         E+      ++  + +      + +  
Sbjct: 500  ALFELIESLQVYDKLQAMKDRELERGDALAASEHEQAWNEWIAVLDQFVYMFGEQEMSVE 559

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
            +   I+    D             + +     +RL N     + G+N+GV+P        
Sbjct: 560  QAAKILDEGFDTLEFSRIPPTLDEVMVATVDLARLSNIKVAFVIGMNDGVYPTRMEYEGL 619

Query: 664  LSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIPTIASRW 715
            LS + +   +        T+   + Q    F  A  T    L  T    +     + +  
Sbjct: 620  LSDIEREWFSQIGYELAPTSTNRLLQENFLFYRAITTPSNKLYMTYPTADEEGKALLASL 679

Query: 716  LQ--------------------------RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
                                         LL      +  + +      +   R+ +++ 
Sbjct: 680  YMKKIIGNDKKAGLLSGVSIERVVIDPIELLDGDVLPYLRHPRTALAHLMVQLRQAEHSR 739

Query: 750  KQPHYKRPKPFPPLEAQPRTY---------------------------------SFSEIK 776
            +             +                                       S S I+
Sbjct: 740  ELAPEWLALQRFYKQDPYWALIFDRVLYPITHKNEAEPLETYITQELYGQKLTSSVSRIE 799

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN---H 833
            +    P++ +    L+L+     +   +    G LFH  +  + ++   +    I     
Sbjct: 800  KYFRCPFSHFTTYGLRLEER--AEYRLETFAMGDLFHEALKWITEETHRQQLSWIRLTTK 857

Query: 834  LMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFV 883
             +KQ+     E+                   +    +I    +    +    S  + I +
Sbjct: 858  QIKQLARQAVEQIVPVFSHQILLSSARYRYIQRKLIRIVERTMTALTQHANVSHFKPIAI 917

Query: 884  NIPAKM----AIESIGIHL--------TGFADRID---LLKSGFVDITDYKTGDNP-KKE 927
                       +  + I L         G  DR+D   +    ++ I DYK+        
Sbjct: 918  EASFGPGQHEQLPPLEIDLTGGKKMFMRGRIDRVDSATIDDRSYLRIVDYKSSARDLDLN 977

Query: 928  TAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
                 +  Q+      A++  S+      + A + Y+ +              +   D L
Sbjct: 978  EVYYGLSLQVLTYLDVAMENSSYWLAGEAEPAGVLYVHVHNPMLKLDKDLTDSEIEEDRL 1037

Query: 987  SEKSLKNL 994
             +  +K L
Sbjct: 1038 KQYKMKGL 1045


>gi|56419216|ref|YP_146534.1| ATP-dependent deoxyribonuclease subunit B [Geobacillus kaustophilus
            HTA426]
 gi|81347987|sp|Q5L264|ADDB_GEOKA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|56379058|dbj|BAD74966.1| ATP-dependent deoxyribonuclease subunit B [Geobacillus kaustophilus
            HTA426]
          Length = 1167

 Score =  190 bits (483), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 133/958 (13%), Positives = 263/958 (27%), Gaps = 126/958 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH----ALKNEKYGMWWLLAADFLKIA 191
            L L    A+     + L ++I   +       +L     A ++        L AD L   
Sbjct: 107  LKLFGRAADKHGFIEQLNEMITECKRYCLTPGELRRHAKAFEDGPDQPGRRLLADKLSDV 166

Query: 192  SKYWTERLVEL-NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
            +  + E    L          + L+              I I G     P    ++  + 
Sbjct: 167  ALVYEELERSLIGHYLDSEDYLRLLAEHIPRSSYLRDADIYIDGFHHFAPQEYMIIEQLL 226

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
             H     V   +D                 +        T+ Q     L + + I   + 
Sbjct: 227  RHCRRVTVCLTIDRPYD-------DGMPDELHLFYLPAQTYRQLRELALSNDIAI---EE 276

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
              + + +     R++V  ++                  +         V L EA N R E
Sbjct: 277  PIVLSANRRHEDRALVHLEA------------QFHRRPLLPYGAKTDAVHLYEASNRRAE 324

Query: 371  AISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLH 426
              ++A  +   + +     +  ALI       R  VK     FGI   +    P+     
Sbjct: 325  IEAVAREIIRLVRDEGARYRDIALIIRQTEAYRDLVKTVFFDFGIPYFMDEKEPMHHHPL 384

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDI 485
              ++ + L  +     + A+   VK  L      + +    A + LE   L         
Sbjct: 385  IELVRAALETVVTRWRYEAVFRAVKTDLLFPTDGDLHMWREAADKLENYVLAYGIKGDKW 444

Query: 486  MDLKSLVLDR-IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
             + +     R  A    N      + +  +   E    L   + +    L   +  +   
Sbjct: 445  TNNERWAYRRYQALDGLNVPQTDEERQFEDMLNEWREALAAPLRRLERRLRRAEDGRGFC 504

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKL--PNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                   +  ++     +     E           E+    +  L  + +E         
Sbjct: 505  MALYLFLEELQIPKKLEKMSAQAEADGRLVEARQHEQAWNAVVDLLDQYVEMLGTESLPL 564

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             E++ II   +D             + +     SRL++     + G N+GV P    ++ 
Sbjct: 565  AEFVKIIEAGLDRLEFSLVPPAMDQVIVAQLDRSRLIDIKYAFVIGANDGVIPAKVKEDG 624

Query: 663  FLSRVMQ---SDLNLKTAEKYIGQAAHD-----FEMANGTRHLIYTRSLREN-NIPTIAS 713
             ++ V +    +L +  A     Q  +D       +   +R L  T  L +      + S
Sbjct: 625  LMAEVEREQLRELGVALAPGGREQLFYDPFFVYLALVCPSRRLYVTYPLADGEGKALMPS 684

Query: 714  RWLQRLLVLGGTDFFD------------------NLKKRGQCYL---------------- 739
              +++L  L                            +  Q YL                
Sbjct: 685  PLIKQLTELFPHAPVHLCGNDPFDAPAEKAEAFVTAPRATQTYLISQLRAWKRNYGIDPL 744

Query: 740  ------------DWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIKQLIND 781
                        DW  ++ +      Y              L  +    S S ++Q    
Sbjct: 745  WWDVYNTFIGHRDWKEQVRHAVSALFYTNGATPLKKQWSQRLYGKKIQASVSRMEQFQKC 804

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEI 831
            PYA +A   L+L     F+   +  D G LFH  I ++           ++    +   +
Sbjct: 805  PYAHFASHGLRLKERNVFR--LEAPDVGQLFHAAIKQIADRLREQHLDWRELSRPDCERL 862

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHL-FHKISHSF--LEHEEKIQSSIEKIFVNIPA- 887
            +    + I    +++ L       +       +      +  E    S    I + +   
Sbjct: 863  SAEAVERIAPLIQQQVLSSSHRYEYMKRKLKHVVARTTHVLSEHARASGFVPIGLELSFG 922

Query: 888  --------KMAIESIGI-HLTGFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLID 934
                    +  +    +  L G  DR+D  +S     + I DYK+             + 
Sbjct: 923  PNGDLPPLRFRLPDGTVMELVGRIDRVDKAESSQGVLLRIIDYKSSAKTLDLTEVYYGLA 982

Query: 935  PQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
             Q+      +   +   +      A + Y  +           D +   A +L E   
Sbjct: 983  LQMLTYLDIVLTYAEQLVGQPALPAGVLYFHIHNPIVQAKQWVDDEVEMAKKLLEPFR 1040


>gi|294495717|ref|YP_003542210.1| UvrD/REP helicase [Methanohalophilus mahii DSM 5219]
 gi|292666716|gb|ADE36565.1| UvrD/REP helicase [Methanohalophilus mahii DSM 5219]
          Length = 1018

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 118/1080 (10%), Positives = 294/1080 (27%), Gaps = 191/1080 (17%)

Query: 36   YDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL 95
             +  +P     +     +++A  E+        G+ S I   + +      +        
Sbjct: 44   DEGFSPD---RILALTFSEKAAGEMEERIENRIGESSGI--TVSTFHSYCNDLLK----- 93

Query: 96   SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155
             ++L   ++   RL+          +       D +    +++P  P     L  +L + 
Sbjct: 94   EFSLYAGINQGTRLIS-----QEHSHVWGINNIDSFGFENIAIPNRP---YDLITSLLEG 145

Query: 156  IDIIETEEKKWEDLHALKN---EKYGMWWLL----AADFLKIASKYWTERLVELNASSPV 208
            +  +       ++L        ++               L     ++ E   + N     
Sbjct: 146  VSQLHDHLVGPQELQEYVKRKLDENIDEQERDDLLKLADLARFYSHYQEYKRDHNFMDYD 205

Query: 209  GYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                 + R         + ++     +++     +  A   L++ +A+  N   V    D
Sbjct: 206  DMISMVCRLLESNEVVRNQIRNRYDYVLVDEFQDTNYAQLYLINLIADGTNLTCV---AD 262

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +      +                     L+ + + R                
Sbjct: 263  DDQCIYRFRGAYLSNIKQLQD-----------YYASLEKIPLDRNY-------------- 297

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
                S+           N +  +  + +       + +++  ++  EA  +A  ++  ++
Sbjct: 298  -RSSSQIVQLSQQLIATNPEREDKTLHSHNGDGEKIKVVKTPDDTSEANWVADEIQRLIE 356

Query: 384  EN---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
            E      +  ++T  R   ++    L    I ++    + L          + ++ +   
Sbjct: 357  EENIAPDEIFVLTRKRADGKKYSDALKGKMIPVEYVGNLQLKNYPIVQEALAYMHIVADP 416

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             +                               +  R   + +D+  + ++        +
Sbjct: 417  FNNGIAFA------------------------RILAREGVSEHDLQKINTMAKKLSRETE 452

Query: 501  NNTHVPHWQSRLSEEDKELAV-LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                  +   +   +D  +    LV  IL  +  L+ Y+ N   +     +         
Sbjct: 453  LEGDGIYSVLQHYLDDVPIIQKALVKSILTRLNELIDYRKNHLPSDTVKYLLSEKTDLYK 512

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETV 618
                          +        +L+S+   +       + A A+E+++++  L  G+  
Sbjct: 513  -----SQLLADTFTSRRNIHILNSLTSMVEDLELVDGGSEFARAVEYLELVFNLDIGDE- 566

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF-LSRVMQSDLNLKTA 677
              +  + +T+ ++   +S+      + +  L +   P    K  F + R ++  +     
Sbjct: 567  --ETSEENTVKVMTIHQSKGKEAKVVFVCDLADRHLPLRFTKKQFRVPRELEKGVQRDVE 624

Query: 678  E---KYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTI--ASRWLQRLLVL--------- 722
            +       +    +      R  L  T   +          S ++ +L            
Sbjct: 625  DKILHLEEERRLAYVAMTRAREKLYLTFPEKYAGNKRGVKPSEFVTQLDYESNPLIEYIE 684

Query: 723  ------------------------------GGTDFFDNLKKRGQCYLDWTRKLDYTT--- 749
                                           G        +            D      
Sbjct: 685  TDRLQDTETVVTESPLKKKQDEYLRLMNMYAGQGQMKQALESLVVLTQLKEIEDKGNLAV 744

Query: 750  --------------KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                          ++      +  PPL      +S S+++Q +  P       +L +  
Sbjct: 745  FNIEDFLKTTPRDIEELEALVNEEMPPLVDSDMRFSASKVRQYMECPLKFKYSNVLNIPI 804

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                         GT  H++  +L +    +       L  +I+D  ++           
Sbjct: 805  PQK-----TFFQTGTDVHSVFEQLSR-YRMQGKSIDMELANRILDETWDGSVFDSQTHEQ 858

Query: 856  -WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914
                   ++   + E E+   +    I V     + ++       G  DRID    G   
Sbjct: 859  QELDRVRQMLEYWFEFEKSNVNET--IAVEEKFNLKLDGAQF--GGVIDRIDQTPEGEYI 914

Query: 915  ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV-ANLFYIRLKQKFKIDC 973
            + DYKT  +P  +  +   D QL+L   A++     +     V A L Y+    +     
Sbjct: 915  VIDYKTSKSPLSKN-KMPEDVQLALYCQAVR----ERYGKYPVKAGLMYVNPNIRDLRLM 969

Query: 974  ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033
              N  +  S        L  + EIV  ++  +  F      +       +Y  +    EW
Sbjct: 970  DVNQSQINS-------VLDGVREIVADIKAED--FEIREEPN---CYFCDYKGIC---EW 1014


>gi|306835515|ref|ZP_07468529.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC
            49726]
 gi|304568572|gb|EFM44123.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC
            49726]
          Length = 1059

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 123/993 (12%), Positives = 261/993 (26%), Gaps = 134/993 (13%)

Query: 46   SVTIYVPTKRAIQEL----RSEFIEITGKKSTI--LPIIKSLGDVV-----EEKFTADLL 94
             V     T++A Q+L    R + I++      +   P  ++L ++       + +  +L+
Sbjct: 67   EVLGLTFTRKAAQQLEQRIRRQLIQLRDSGLIVPGSPAAEALNNIAPTVATYDSYAGELV 126

Query: 95   LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
              Y L  PV    R++  A    I  + + +    L  E  L               L  
Sbjct: 127  REYGLLVPVEPSARIITEAERFAIAYDVVKNYGGKLSDEKTLGSITEV---------LLK 177

Query: 155  IIDIIETEEKKWEDLHALKNE----------------KYGMWWLLAA--DFLKI----AS 192
            I   ++   K  +D+     +                +Y            L++      
Sbjct: 178  ITSDMDNSLKDPDDIAEFARDFRADIDNLEKAPRTKGEYSKDLQKYINVQDLRVQYVPLI 237

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMS 247
            +       E    +         R   EH             +++     +  A   L+ 
Sbjct: 238  EELKRTQAEQQVITFGEQMSVAARLAQEHPAVGKQQAQRYRVVMLDEYQDTSYAQRVLLR 297

Query: 248  TV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
            ++         V    D       W   T ++      +   +        +L       
Sbjct: 298  SLFGGEHKDISVTAVGDPMQAIYGWRGATSENLTAFVEDFPQADGTPAPKDQLTTSWRNP 357

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                             S  +  +              ++       K   ++ L    +
Sbjct: 358  -----------------SGALELANSVAAGVFGGGPRPVDELHAAPHKGEGEIELGYFAS 400

Query: 367  EREEAISIAIALRM---SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
            E EE   IA  LR    + + +  ++A++         +   L    +  +I+    L  
Sbjct: 401  EDEEHEFIAQKLRQQWDAREGDGFRAAVLVRTNRQTAAIAAALDAVDVPNEINGLGGLLW 460

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                  L +L   + +  D  A   +   P+   G  +     A+      A +      
Sbjct: 461  QPEIQDLVALATMLVRPEDAQAALRIFAGPICGLGMGDIQALAARQKNLAGAKQERLQWE 520

Query: 484  DIMD----LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
            + MD    L++ +    A   + T           E        +  + +    L   +T
Sbjct: 521  EGMDPEEYLRAQLAQLTAEGPDQTVGLADALADLGERDRYTPQGLARMEEVSAKLRYLRT 580

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
               S   +   +D   +     + +                G T    F+ I+       
Sbjct: 581  YSLSKPLSDLFADIEAIFNIRTEVLARGSAG----------GATHLDKFADIVAGFHGDS 630

Query: 600  A-NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI------------- 645
                ++++++     DG  +      +  + I+   +++ L ++ +              
Sbjct: 631  LYALLDYLELAREHEDGLGLGEVPASTDRVQIMTVHKAKGLEWEHVYVVHADSSSYKAQA 690

Query: 646  ---------LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
                     + G N+ +     A                       +AA  F +A     
Sbjct: 691  ETFLSKIEKVPGDNDYIEVSPDAVTRSEFEKACKAFLDDDRAHNAEEAARLFYVALTRTE 750

Query: 697  LIYT-----RSLRENNIPTIASRWLQRL---------LVLGGTDFFDNLKKRGQCYLDWT 742
               T      + R          +L+RL               +  +      +  L   
Sbjct: 751  STLTVTGSGTNNRTGKAKKGPYEYLERLKETFPQYVGEWTVPEEPVETSAHAAESGLFPA 810

Query: 743  RKLD----YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL-----KL 793
             + D                       +       ++  LI +  ++    +      +L
Sbjct: 811  LEADPDSLAGADAVLAAMEDLPELSHGETFELWEQDVGALIEEYKSLQQPVVDVELPSEL 870

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                      D           +         + T     L ++        E   P ID
Sbjct: 871  TASDMVALGSDPLQFARRQRRPVPFKPNSYAKRGTAFHAWLEERFGSPALLGEEELPGID 930

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913
                    ++  SFL  E   +   +  FV  P ++ I S    + G  D +  L     
Sbjct: 931  EPEDFDLEELKESFLNSEWAQR---QPDFVEAPFEITIGSA--VVRGRMDAVFRLADDTW 985

Query: 914  DITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             + D+KTG  PK    +     QL++ A A + 
Sbjct: 986  MVVDWKTGRPPKGTAMEAAKI-QLAVYAEAWRR 1017


>gi|50954628|ref|YP_061916.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951110|gb|AAT88811.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 1043

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 118/1025 (11%), Positives = 257/1025 (25%), Gaps = 109/1025 (10%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
            AP +     ++ AL    L   +    +  L  +         R    L           
Sbjct: 45   APGTGKTTALVEALAERVLGRGYAPGEVLALSASRAAATALRDRLALRL---------GV 95

Query: 72   STILPIIKSLGDVVEEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDL 130
             T  P+ ++   +  +        +    P + +  ++   +A L+         +    
Sbjct: 96   PTPGPLARTATSLAFQLARERARRTGEEPPRLLTGGEQDRIIAELLA------GQLEDGT 149

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             P  P  L     +       L ++I            L  L        W  AA F+  
Sbjct: 150  GPLWPDVLGPEVRSLRGFRTELRELIARCAERGVSPARLSELGTITGREGWRAAAGFIAE 209

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                                  + +    +         + +     +  AT  L+  +A
Sbjct: 210  YQSVLDSY--RGRFVDAAELIASAVAIVRDGSPLDCLRAVFVDDLQEATVATVALLRALA 267

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
            +   G  ++   D  + +  +      +     +                    + R  +
Sbjct: 268  S--RGVAIIAFGDPDVASTAFRGAEATALGQLGARLGVP---------------VTRFVL 310

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                  +  +   +  +++          R       +         +V +I A +   E
Sbjct: 311  ATAHRQTPVLRELTARMTERIGTAAAGVQRVASAGRGEPERTGGTRPEVVIISAVSTPSE 370

Query: 371  AISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLH 426
            A  +A  LR     +       A++         +   L    +    S AG  L     
Sbjct: 371  AARLARRLRERRLLDGVPWGEMAVVVRSGAHIPGLARALAVAEVPTKTSIAGRALRDVFA 430

Query: 427  SSIL--TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
            +  L   + +            A L+  P            R     E +A  GN+ + D
Sbjct: 431  ARQLITLAGIEVGALELTPERAAELLLGPFGGLDSISLRRLRLALRQEELASDGNRAADD 490

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
            +                    P   + +       A  L + +        T  T +   
Sbjct: 491  L-------------LVEALADPARLATIDSSPARRAARLAETLRSGREKAATGSTIEELL 537

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                  S   +  +   +   +       +L       T +  F +              
Sbjct: 538  WHAWERSGLARRWMEQSERSGIVADEANRHLDGVVALFTAARRFVERFPERPASDFV--- 594

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
             ++++   +  +T+  +      + +  +  +    F+ + +  L E VWP    +   L
Sbjct: 595  -VELLGADVPEDTLAAQTA-GDAVLVCTSSATIGREFEVVAVARLQESVWPNLRLRGSLL 652

Query: 665  SRVMQSDLNLKTAEKYIGQAA---------HDFEMANGTRHLIYTRSLRENNIPTIASRW 715
                          +   Q A             ++     ++ T ++ ++  P+   R 
Sbjct: 653  HPQELGSALDGRKTETEDQRAQVLGDELRMFALAVSRARGQVLLTATVNDDEQPSPFLRL 712

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT-------------------------- 749
               L      D    L  RG       R +                              
Sbjct: 713  AGELAAPDTEDSIHPLSLRGMVGRLRRRLVTTGAPEAAAALARLADAGVEGADPADWYGL 772

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
             +P  + P             S S +      P A +   +                  G
Sbjct: 773  AEPTTEEPLVDLTDPEAGVRLSPSRLGTFEKSPLAWFVEEMAASPSSLT-------AGIG 825

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            T+ H ++ E               + ++  +  FE   +        R L   +S    +
Sbjct: 826  TVVHAVMEEASATGEFGVDALWAGIEQRWAELAFESPWVEERERRRTRGLVGGVSDYLRD 885

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKET 928
             E   ++    +      ++ +      + G  DR++    G V + D KTG   P    
Sbjct: 886  FE---RAGGRLLGSEGEFELRLGRA--RIGGKIDRVEATPDGTVVLVDLKTGRTVPSAAE 940

Query: 929  AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                   QL     AL+ G+  +   R       + + +  +        +     E  E
Sbjct: 941  TASHA--QLGAYQLALEHGAIEEAGERPPGGAKLLFVAKGVRGKPYRELVQDRVDAEGLE 998

Query: 989  KSLKN 993
            +  + 
Sbjct: 999  RLKQR 1003


>gi|326202080|ref|ZP_08191950.1| ATP-dependent nuclease subunit B [Clostridium papyrosolvens DSM 2782]
 gi|325987875|gb|EGD48701.1| ATP-dependent nuclease subunit B [Clostridium papyrosolvens DSM 2782]
          Length = 1148

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 112/935 (11%), Positives = 248/935 (26%), Gaps = 133/935 (14%)

Query: 147  WLAKNLADIIDIIETEEKKWED----LHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                 L+ +I  ++    + +     L  L  + Y +        +K+    +   L   
Sbjct: 117  GFVNTLSTLITELKRYNVRADSFDEVLEGLTEDNYLLH---KLKEIKLIYSEFDNMLESR 173

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
               +    ++ L+ ++ +     +K  I I G  G  P    ++S +        +    
Sbjct: 174  YRDT--DDELTLLASKLDSTEMYSKAEIWIDGFAGFTPQEVEVISKLIQQTENVYITMCT 231

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            D         +    +    S              K +   +     +     +++    
Sbjct: 232  DVLFDEMQSGSTDVFAAVKKSC------------KKFVSIAEASDVKILPPVGLNSANLP 279

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA-IALRMS 381
            R     +              +        Q+  +D+ L E+ N   E    A   +R  
Sbjct: 280  RFKESRELQSQEANYFAYPYRV-------YQQPTTDIELFESVNIYAEIEECARDIIRQC 332

Query: 382  LDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             D     K   + T +      +      ++ I   I +   ++      ++ S+L    
Sbjct: 333  RDNDMQFKDITVATRNLTGYENLIEVIFEQYNIPCFIDSKTEITNHPLVRMVLSMLEIFT 392

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
            +   + A+   +K  L         L         +         +              
Sbjct: 393  ENWSYEAVFRYLKSGLTGIEDTRIDLLENYVLACGIRGSRWTQEAEWNTSIEF-RPDDKQ 451

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
               N  +    +    E +E  +   +      T    + T        + + +  +  +
Sbjct: 452  SPENDEMLLQVNVTRNEVREPLLRFRNRTKGRRTA-EDFCTGIYEYLVEIGVEERIRDYI 510

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                       +      +++    L  +F +++E          ++ ++    +    +
Sbjct: 511  DSFTQNG----QLRLAGEYQQVWNILMDVFDQVVEVMGDETFGIEKFANVFKIGLAEYKI 566

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------D 671
                     + I      R      L + G N+GV+P        LS   +        +
Sbjct: 567  SSIPASLDQVLIGSIEHLRSHEIKALYILGTNDGVFPSAGISEGVLSDKDRDVLNKKGIE 626

Query: 672  LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRS-LRENNIPTIASRWLQRLL--------- 720
            L   T  K   +    +      ++ L  +             S  + R+          
Sbjct: 627  LASDTKSKAFDELYLIYRTLTMPKNFLRISWPIADHEGRTMRPSTIISRMRKIFPNITEK 686

Query: 721  -VLGGTDFFDNLK------------------------KRGQCYLDWTRKLDYTTKQ---- 751
              +      +N                          + G  + +         +     
Sbjct: 687  NNILKPAGVNNNIDLIASPVPSFNQLVSILRQKNEGIEPGHMWKELFAWFSAQEEWKQKC 746

Query: 752  -----PHYKRPKPFPPLEAQPRTY-------SFSEIKQLINDPYAVYARRILKLDFIPHF 799
                     R    P  +A+ R         + S +++  + P+A Y +  L        
Sbjct: 747  DAMINALKYRNIAVPVDKAKIRELYGKNPYFTVSRLEKYTSCPFAFYVQYGLGARERK-- 804

Query: 800  KKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDSHFEK-----EN 847
                   D GT  H +I    K            +    +  + +I+D            
Sbjct: 805  IYRLSPPDVGTFMHAVIERFSKMVDENNYSWREIDRQWCSDEVSKIVDELLASMKNTILG 864

Query: 848  LPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK---------MAIESIG- 895
                   +      ++     +L  E   +SS E +   +            + ++S   
Sbjct: 865  GSKRFKAL-AVRLKRVVTRAVWLIAEHIRRSSFEPVGYEVEFGEGGAYPPIVIELDSGEK 923

Query: 896  IHLTGFADRIDLL--KSGF-VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
            I L G  DRID L   +G  + I DYK+G  + K       +  QL     AL   S + 
Sbjct: 924  IKLVGRIDRIDTLSTDNGKYLRIVDYKSGDKDFKLSDVYYGLQMQLITYLDALWESSENS 983

Query: 952  IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
             +      + Y R+      D +       S +E+
Sbjct: 984  GEKALPGGILYFRVD-----DPMIKGTGSSSPEEI 1013


>gi|145294938|ref|YP_001137759.1| hypothetical protein cgR_0884 [Corynebacterium glutamicum R]
 gi|140844858|dbj|BAF53857.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1016

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 123/1056 (11%), Positives = 283/1056 (26%), Gaps = 171/1056 (16%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL--PIIKSLGD 83
            ++  +V+            +S+ +   +K A   LR E  E   +   +   P+++S+  
Sbjct: 53   VSSAVVDTVLERIRQGWEPSSMLVVATSKEAASRLRQEISESVAQMDYVSEGPLVRSVHS 112

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            V              L   ++  ++   +  L+            D              
Sbjct: 113  VAFALIRDASDDDVRL---ITGAEQDAVIRELLRGHA--------DDGRGGWPQEQREGL 161

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
              +  A+ L D +          ++L  L        W+ A +FL+     + + +    
Sbjct: 162  RMVGFARQLRDFLLRAVERGVGPDELVELGERFERANWVAAGEFLRE----YKQVMKLSG 217

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
            A S       +  A            + I  +    P +A L+S     P   + +   D
Sbjct: 218  AHSFSAS-ELVTEALRGPEPSVKYRGVFIDDAQHLDPKSAELVSRF--FPEAELAVVAGD 274

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +           S +                                      
Sbjct: 275  PQQSVFRFRGANPDFLTKLSVD-------------------------------------- 296

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
               +        ++ +   +        +        LI+  +  E    IA+ +R +  
Sbjct: 297  -HEVVLKGRRKASTSIVVAETESAHADLLADTVRRAHLIDGRSWSE----IAVIVRSA-- 349

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND 442
                          +   ++  L   G+ + IS   + L+     + +   L A+ +  +
Sbjct: 350  -------------GMIAPIRRTLLAAGVPVHISPTDVVLAEQRIVAAMILGLRALTESLN 396

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             + +  L+  P+         L R    L    ++       I  L+SL+ +  A     
Sbjct: 397  AIELEDLLLGPIGG--ADPVTLRRLLRGLRQAEMKMGGQRRAIEVLRSLLEESDAEM--- 451

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                     L++ +  L   +   +      L  + + +       S +D +        
Sbjct: 452  ------LGFLTDRELNLLERVRSVLEAGREALAEHGSIEEVLWALWSATDLSNSLSAISL 505

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                   +   +L         +  + +   +           + I  + +     + + 
Sbjct: 506  RGGASGSQADRDLDAMMALFDAAGDYVERYPSAGVRSF----ILHISEQELPTGMRERRG 561

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK------- 675
                 + +L    +    +  +I+  + EG WP        L +    DL  +       
Sbjct: 562  AIPEAVEVLTAHATTGREWKRVIVAEVQEGSWPSLGETGTLLGQEEFVDLMDEGIDPDII 621

Query: 676  ---TAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRL---------LV 721
               +AE+   +    +     +   +   ++   +++     SR+L+ L           
Sbjct: 622  ISRSAERLAEERRLFYLATTRSTESLLVTAVNSPDSDEVREPSRFLELLSQPIVVLEGEE 681

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------------------------- 756
                   + +  R         +L      P   R                         
Sbjct: 682  ASAIAEPEEIGHRLLSIPAMVAELRRVVNDPRDPRRKQAARQLSRLAEAGIPGANPAEWT 741

Query: 757  ----PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                P     L     + S S I+QL+N P      R      +   ++ P    +GTL 
Sbjct: 742  NLRTPSTDEELIKGAVSLSPSRIEQLLNCPLRAVLDR------LDSEEETPIAMLKGTLV 795

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H     +          +     +++  ++ +  N+P          F +I        +
Sbjct: 796  HAFAEAVAGGV------DAALAEEKVTSAYMQLANVPSWSRESTEIAFRRILSRTDTWLK 849

Query: 873  KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
              ++   ++   +   + I+   + + G  DR++  KSG + + D+KTG           
Sbjct: 850  TSRADFTEVGTEMDVSVTIDD-SVSIRGRMDRLERNKSGELVVVDFKTGKTQIAAK-DMG 907

Query: 933  IDPQLSLEAAALKAGSF---------SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
              PQL     AL  G                  V     +          +    +    
Sbjct: 908  DHPQLFAYQLALSKGVLHGDKISDPNPGETPDPVGGGLLVY--PATDTKAVGQRMQDPKT 965

Query: 984  DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
             E  +     L  +   L+       + +  +  + 
Sbjct: 966  QEDLDDFAAMLPGLAEHLRGPNL--FARVNPTCSTC 999


>gi|313622691|gb|EFR93053.1| ATP-dependent nuclease subunit B [Listeria innocua FSL J1-023]
          Length = 1157

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 121/951 (12%), Positives = 277/951 (29%), Gaps = 134/951 (14%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
                 LA +   ++ EE   ++L                  + +  + + E L       
Sbjct: 116  GFYSELAKLFKEMKQEEISVDELEK-SAANLSTSVSSKVHDISLIYQKYEELLA--GKFL 172

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 + L+  +        +  III G T        ++  +    +   V   L+   
Sbjct: 173  ENEDYLRLLADKIIESDYLNQTEIIIDGFTSFSKQELTVIEKLMQKCDKVTVSLTLNV-- 230

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               I   + E S    S+         ++L ++     I+ E  K L             
Sbjct: 231  -PEIHKGLEEFSMFKASTEAY------FALLEMAKLNKIQVEPEKTLIENKRANSDSLAF 283

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--E 384
            ++ ++               NK  + +   +D+ + +A+N R E   +A  +R       
Sbjct: 284  LANAW-------------GGNKYSSYEGGVNDLTIHQANNRRAEMEGVAREIRQLTLNGY 330

Query: 385  NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
              +  A++T +  +     +  +  F I I I     ++       + S ++AI     +
Sbjct: 331  RYRDIAILTRNISDYDILCETVMESFDIPIFIDKKRAMAKHPFIEFIRSSIDAILFNWKY 390

Query: 444  MAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              I   VK             + R  + LE   L     +    + +   + R     + 
Sbjct: 391  EPIFQAVKTEFFFDVAENTTIMRRKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLST 450

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT-------- 554
              +P      ++E+     ++ +     + PL T + N  +    +  +           
Sbjct: 451  NVLP-----QTDEELATQSVINEMRKLIVEPLSTLENNITNAKTGIEFAMALYHYLEQVK 505

Query: 555  -KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                +   + V  +          E+   ++S L  + +E     + +   + +IIT  +
Sbjct: 506  AVEHLESWRQVAEENGYLELAREHEQAWSSISELLDEFVEVLGEEELDINSFSEIITTGL 565

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            D             + +     ++LLN   +   G+N+GV P        LS   +  L 
Sbjct: 566  DALEFSLLPPSLDQVVLADMENAKLLNMKVIFAIGMNDGVMPLRQKDKGILSDQDRDSLR 625

Query: 674  L------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI-------------- 711
            +       +A+  IG+            +  L  +    +     +              
Sbjct: 626  VENSNLKPSAKNNIGEEDLLAYKIMSLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFK 685

Query: 712  ---ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL---------------------DY 747
                S +L    +L   +    ++ +       T +L                     + 
Sbjct: 686  NLNESVYLTDPSLLNDKEQSSYIRSKQATLGLLTSQLQMYKRGYPLSNVWWDAYNSYFEN 745

Query: 748  TTKQPHYKRPKPFPPLEAQPRTY---------------SFSEIKQLINDPYAVYARRILK 792
            + +    K+       E   +                 S S +++  +  +  +A+  LK
Sbjct: 746  SEESEAAKQVLSSLYYENNTKPLQETTAKNLFGENIHASVSRMEKFFSCEFQHFAQYGLK 805

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSH 842
            L+            D G +FH  +  +                +   ++  L    +   
Sbjct: 806  LEER--AHYKLQAVDMGEIFHGAMEWISAELKRTNRDWGNLTEEECRQMAKLAMTFLAPK 863

Query: 843  FEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIH-- 897
             + E L         ++   +I      + +E+   S+   I + +   +  +   +   
Sbjct: 864  IQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPIGLEVDFGLKGDIPPLKIP 923

Query: 898  --------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALK 945
                    L G  DRID  +      + I DYK+  +          +  Q+      + 
Sbjct: 924  LQSDSELLLQGRIDRIDAAEQDNRTFLRIIDYKSSSHDLALTEVYYGLALQMLTYLDIVV 983

Query: 946  AGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              +   I    + A + Y  +  ++         +  + +      +K LI
Sbjct: 984  TNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIARELQKSSKMKGLI 1034


>gi|77164501|ref|YP_343026.1| hypothetical protein Noc_0987 [Nitrosococcus oceani ATCC 19707]
 gi|76882815|gb|ABA57496.1| DNA helicase/exodeoxyribonuclease V, subunit B [Nitrosococcus oceani
            ATCC 19707]
          Length = 911

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 112/712 (15%), Positives = 208/712 (29%), Gaps = 80/712 (11%)

Query: 360  ALIEADNEREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLEL------------ 406
              +   +  EE    A   R  L+    +K  +I  +    R     +            
Sbjct: 225  RRVALADTIEEITVAARWARHRLEHSPGEKIGVIVPELEFLRVQVARIFDDILHPEAVLP 284

Query: 407  --TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
               R     ++S   PL+          +L         + +   ++ P       E   
Sbjct: 285  GRGRIERAYNLSLAQPLADNPLVHTALLILELSKGELSMVEMGAFLRSPFVGAAEQEFSH 344

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                                   L + +      + +   +        EED        
Sbjct: 345  RAL--------------------LDAYLRKTREERVSLERLWKAAITAREEDA------N 378

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
                     L  +K   +S       S W +     LQ +     R L +  ++      
Sbjct: 379  HRCPALGERLQQFKVEVDSLPARQPPSGWAQSFTCWLQLLGWPGERPLDSEEYQAVSAWH 438

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             S+ S                I     L+     +P+      + ++G LE+    FD  
Sbjct: 439  KSIQSFSSLDRVVPSLKKNVAIGKFRHLLVETLFQPENPIVP-VQVMGVLEAAGEQFDAA 497

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTR 701
             + GL++G+WP     NP L   +Q    L   +AE+ +       E        +I + 
Sbjct: 498  WMLGLHDGIWPTAPRPNPLLPIELQRHYRLPHASAERELAYTRVVTERLLASAPVVIVSH 557

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
              RE +     S  +  L  +         + +      +  ++  T +       +  P
Sbjct: 558  PRREGDRDLRPSPLIAELASVLPE------RLQLASVESYVNEIQQTGRMETLVDAQGPP 611

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                         +K     P+  +A   L    +       +  D+G L H  +  L +
Sbjct: 612  LEAGAQVGGGTGLLKAQAACPFRAFAEYRLGAKGLEEPSVGLESLDQGILIHVALQYLWE 671

Query: 822  KRINKNTPEI--NHLMKQIIDSHFEKENLPPHI--DIIWRHLFHKISHSFLEHEE----- 872
            K  N++T        +  +I    ++           I+   F  I    LE        
Sbjct: 672  KLQNQHTLLSCSAEELHGLIAEAAKQAIATQTAVRPRIFTERFTAIEQERLEQLLLEWLE 731

Query: 873  --KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKKETA 929
              K +     +         +   G+ L   ADRID L+SG   I DYKTG + P+    
Sbjct: 732  RDKQRPPFAVLHQERSQ--PLNLGGLSLDTRADRIDQLESGERVIVDYKTGRSNPRHWFG 789

Query: 930  QKLIDPQLSLEAAA----LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND-----KKK 980
            ++  +PQL L   A    L A  F+Q+   +   + Y+ + ++                 
Sbjct: 790  ERPEEPQLPLYCIAHEAPLAAVLFAQVRRGE---MKYLGVTKEEGSMPEVAVFTRVAGGL 846

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
             S +EL  +  + L  +   +      + +       S        L R+ E
Sbjct: 847  DSWEELLARWFQVLHALAVEVVE---GYAAVAPRDANSCDYCALPGLCRIKE 895


>gi|16801432|ref|NP_471700.1| hypothetical protein lin2369 [Listeria innocua Clip11262]
 gi|81525574|sp|Q929A8|ADDB_LISIN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|16414892|emb|CAC97596.1| addB [Listeria innocua Clip11262]
          Length = 1157

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 120/951 (12%), Positives = 278/951 (29%), Gaps = 134/951 (14%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
                 LA +   ++ EE   ++L                  + +  + + E L       
Sbjct: 116  GFYSELAKLFKEMKQEEISVDELEK-SAANLSTSVSSKVHDISLIYQKYEELLA--GKFL 172

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 + L+  +        +  III G T        ++  +    +   V   L+   
Sbjct: 173  ENEDYLRLLADKIIESDYLNQTEIIIDGFTSFSKQELTVIEKLMQKCDKVTVSLTLNV-- 230

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               I   + + S    S+         ++L ++     I+ E  K L             
Sbjct: 231  -PEIHKGLEDFSMFKASTEAY------FALLEMAKLNKIQVEPEKILLENKRANSDSLAF 283

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--E 384
            ++ ++              +NK  + +   +D+ + +A+N R E   +A  +R       
Sbjct: 284  LANAW-------------GDNKYSSYEGGANDLTIHQANNRRAEMEGVAREIRQLALNGY 330

Query: 385  NKKKSALITADR-NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
              +  A++T +  +     +  +  F I I I     ++       + S ++AI     +
Sbjct: 331  RYRDIAILTRNIGDYDILCETVMESFDIPIFIDKKRAMAKHPFIEFIRSSIDAILFNWKY 390

Query: 444  MAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              I   VK             + R  + LE   L     +    + +   + R     + 
Sbjct: 391  EPIFQAVKTEFFFDVAENATIMRRKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLST 450

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT-------- 554
              +P      ++E+     ++ +     + PL T + N       +  +           
Sbjct: 451  NVLP-----QTDEELATQSVINEMRNLIVEPLSTLENNITKAKTGIEFAMALYHYLEQVK 505

Query: 555  -KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                +   + V  +          E+   ++S L  + +E     + +   + +IIT  +
Sbjct: 506  AVEHLESWRQVAEENGYLELAREHEQAWSSISELLDEFVEVLGEEELDVNSFSEIITTGL 565

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            D             + +     ++LLN   +   G+N+GV P        LS   +  L 
Sbjct: 566  DALEFSLLPPSLDQVVLADMENAKLLNMKVIFAIGMNDGVMPLRQKDKGILSDQDRDSLR 625

Query: 674  L------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI-------------- 711
            +       +A+  IG+            +  L  +    +     +              
Sbjct: 626  VENSNLKPSAKNNIGEEDLLAYKIMSLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFK 685

Query: 712  ---ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL---------------------DY 747
                S +L    +L   +    ++ +       T +L                     + 
Sbjct: 686  NLNESVYLTDPSLLNDKEQSSYIRSKQATLGLLTSQLQMYKRGYPLSNVWWDAYNSYFED 745

Query: 748  TTKQPHYKRPKPFPPLEAQPRTY---------------SFSEIKQLINDPYAVYARRILK 792
            + +    K+       E + +                 S S +++  +  +  +A+  LK
Sbjct: 746  SKESEAAKQVLSSLYYENKTKPLQETTAKNLFGENIHASVSRMEKFFSCEFQHFAQYGLK 805

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSH 842
            L+            D G +FH  +  +                +   ++  L    +   
Sbjct: 806  LEER--AHYKLQAVDMGEIFHGAMEWISAELKRTNRDWGNLTEEECRQMAKLAMTFLAPK 863

Query: 843  FEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIH-- 897
             + E L         ++   +I      + +E+   S+   I + +   +  +   +   
Sbjct: 864  IQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPIGLEVDFGLKGDIPPLKIP 923

Query: 898  --------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALK 945
                    L G  DRID  +      + I DYK+  +          +  Q+      + 
Sbjct: 924  LQSDSELLLQGRIDRIDAAEQDDRTFLRIIDYKSSSHDLALTEVYYGLALQMLTYLDIVV 983

Query: 946  AGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              +   I    + A + Y  +  ++         +  + +      +K LI
Sbjct: 984  TNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIARELQKSSKMKGLI 1034


>gi|254434433|ref|ZP_05047941.1| hypothetical protein NOC27_1364 [Nitrosococcus oceani AFC27]
 gi|207090766|gb|EDZ68037.1| hypothetical protein NOC27_1364 [Nitrosococcus oceani AFC27]
          Length = 904

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 112/712 (15%), Positives = 208/712 (29%), Gaps = 80/712 (11%)

Query: 360  ALIEADNEREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLEL------------ 406
              +   +  EE    A   R  L+    +K  +I  +    R     +            
Sbjct: 218  RRVALADTIEEITVAARWARHRLEHSPGEKIGVIVPELEFLRVQVARIFDDILHPEAVLP 277

Query: 407  --TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
               R     ++S   PL+          +L         + +   ++ P       E   
Sbjct: 278  GRGRIERAYNLSLAQPLADNPLVHTALLILELSKGELSMVEMGAFLRSPFVGAAEQEFSH 337

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                                   L + +      + +   +        EED        
Sbjct: 338  RAL--------------------LDAYLRKTREERVSLERLWKAAITAREEDA------N 371

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
                     L  +K   +S       S W +     LQ +     R L +  ++      
Sbjct: 372  HRCPALGERLQQFKVEVDSLPARQPPSGWAQSFTCWLQLLGWPGERPLDSEEYQAVSAWH 431

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             S+ S                I     L+     +P+      + ++G LE+    FD  
Sbjct: 432  KSIQSFSSLDRVVPSLKKNVAIGKFRHLLVETLFQPENPIVP-VQVMGVLEAAGEQFDAA 490

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTR 701
             + GL++G+WP     NP L   +Q    L   +AE+ +       E        +I + 
Sbjct: 491  WMLGLHDGIWPTAPRPNPLLPIELQRHYRLPHASAERELAYTRVVTERLLASAPVVIVSH 550

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
              RE +     S  +  L  +         + +      +  ++  T +       +  P
Sbjct: 551  PRREGDRDLRPSPLIAELASVLPE------RLQLASVESYVNEIQQTGRMETLVDAQGPP 604

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                         +K     P+  +A   L    +       +  D+G L H  +  L +
Sbjct: 605  LEAGAQVGGGTGLLKAQAACPFRAFAEYRLGAKGLEEPSVGLESLDQGILIHVALQYLWE 664

Query: 822  KRINKNTPEI--NHLMKQIIDSHFEKENLPPHI--DIIWRHLFHKISHSFLEHEE----- 872
            K  N++T        +  +I    ++           I+   F  I    LE        
Sbjct: 665  KLQNQHTLLSCSAEELHGLIAEAAKQAIATQTAVRPRIFTERFTAIEQERLEQLLLEWLE 724

Query: 873  --KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKKETA 929
              K +     +         +   G+ L   ADRID L+SG   I DYKTG + P+    
Sbjct: 725  RDKQRPPFAVLHQERSQ--PLNLGGLSLDTRADRIDQLESGERVIVDYKTGRSNPRHWFG 782

Query: 930  QKLIDPQLSLEAAA----LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND-----KKK 980
            ++  +PQL L   A    L A  F+Q+   +   + Y+ + ++                 
Sbjct: 783  ERPEEPQLPLYCIAHEAPLAAVLFAQVRRGE---MKYLGVTKEEGSMPEVAVFTRVAGGL 839

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
             S +EL  +  + L  +   +      + +       S        L R+ E
Sbjct: 840  DSWEELLARWFQVLHALAVEVVE---GYAAVAPRDANSCDYCALPGLCRIKE 888


>gi|159039659|ref|YP_001538912.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
 gi|157918494|gb|ABV99921.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
          Length = 1096

 Score =  190 bits (481), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 120/1048 (11%), Positives = 250/1048 (23%), Gaps = 135/1048 (12%)

Query: 30   LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK---KSTILPIIKSLGDVVE 86
            LVE         +    V +   ++R    LR            +    P++++      
Sbjct: 36   LVEAVAARVAEGVDPERVLVLTFSRRQAASLRQRIEARIAGDGHRVLREPLVRTFPAYAF 95

Query: 87   EKFTADLLLSYNL-NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                             ++  ++ L +  L+ +   +      D  P             
Sbjct: 96   GLLRRAAAERGEPSPRLLTGPEQDLIIRELLDLVGEE-----PDNDPVGWPEDLRPALRT 150

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN-- 203
               A  L D++           +L  L        W  AA FL+        R V     
Sbjct: 151  RAFAAQLRDLLMRAAERGIGPVELARLGERLGRADWPAAARFLREYVAVLALRDVGNRGS 210

Query: 204  -ASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
             A  P     +      +        +     + +     + PA   L++TVA      +
Sbjct: 211  IAYDPAELVRSATGMLLDDPALLAAERRRLAHVYVDEYADTDPAQQDLLATVAGDGKALV 270

Query: 258  VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
            VL   D    T  +                 ++    +              ++    ++
Sbjct: 271  VLA--DPDSSTYAFRGADPGGVVTFPHRFRTASGAPAAQVVFTTSYRAAPRLLEAHARLA 328

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
              + G                           P          +    +   EA  +A A
Sbjct: 329  RRLRG-------------------PATHRRLRPLPTAATGTAEVRTFRSAASEAAWLAHA 369

Query: 378  LRMSLDENKKKSALITADRNLARRVKLELTRFGIN-----IDISAGIPLSTTLHSSILTS 432
            LR +   +    A +        R    L R         +     +PL      + L  
Sbjct: 370  LRAAHLLDGVPWAEMAVLVRSTARQLPSLRRALHAAGVPTVVHGEDLPLHLQPAVAPLLL 429

Query: 433  LLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            LL         D  A   L+  PL           R +  L ++AL           +  
Sbjct: 430  LLRCALAPDRLDEEAAVALLHSPLGG--ADPLAERRLRQGLRVMALAAGDRRPSGELITE 487

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK-NSTCGNLS 549
             + D       +         ++              +     L         +   + +
Sbjct: 488  ALRDPAELAGIDRRWAEPAQTVAGLLAVARETAARPGVTAEEVLWAVWRASGLAELWSAA 547

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
            ++                      +L         ++ F+  +          +    ++
Sbjct: 548  LARTPATAGEGDVARRRRAEAADRDLDAVMVLFDAAARFTDRLPGARVE----VFLDHVL 603

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
             + +  +T+ P  ++   + +L    ++ L +D + + G+ EGVWP    +   L     
Sbjct: 604  GQDLPADTLAPTADRGDAVRLLTAHAAKGLEWDVVAVAGVQEGVWPDLRLRGSLLGSERL 663

Query: 670  SDL-------------------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
             D+                    L   E+ +   A            + + ++  ++   
Sbjct: 664  VDVLAGRSAGAGPRASVVGQTSALLDEERRLFHVAVTRARRRLLVSAVASATVGGDDHDE 723

Query: 711  IASRWLQRL-------------------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
              SR+L  L                             +   R         +L      
Sbjct: 724  QPSRFLHELGVADPPPAAAAGPDGDAASDEARTAPLPLSRPPRALTLASLVAELRAAVTD 783

Query: 752  PHYKRPKPFPPL---------------------------------EAQPRTYSFSEIKQL 778
            P     +                                      + +P   + S ++  
Sbjct: 784  PASPALRRRAAAAELARLAAEGVAGAHPSDWWGLRPLSDDRPLVADGEPVRVTPSGMESA 843

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
            +         R                   G L H              + +   L+  +
Sbjct: 844  LRCSLRWLLERHGGSAPAGA------AQGVGNLVHAA-----AMLAESASSDRRALLDYV 892

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                   E     +    R     +    L         +  I      ++      + L
Sbjct: 893  ASRFDAIELAARWMVGPERARAEAMVDKLLRWLATNPRRLLAIEHEFAVRLNDPRHPVDL 952

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
             G  DR+++   G + + D KTG +     A     PQL    AA++AG+F++    +  
Sbjct: 953  VGRVDRLEVDADGRLVVVDLKTGKSTAVTAADLAEHPQLGAYQAAVEAGAFAEFGA-ESG 1011

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADEL 986
                ++L    K     +          
Sbjct: 1012 GAALVQLGTAAKDAREQSQPPAGEGPAA 1039


>gi|317497578|ref|ZP_07955896.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
            5_1_63FAA]
 gi|316895137|gb|EFV17301.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
            5_1_63FAA]
          Length = 1126

 Score =  190 bits (481), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 104/921 (11%), Positives = 242/921 (26%), Gaps = 125/921 (13%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
                 L      +   +   EDL  + +           + + +  + + + + E     
Sbjct: 125  GFIDELKSFFAEVYQYDVSMEDLKKITDGMKEEGLRSKMEDILLVMENFEDYIKERYLI- 183

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 + ++  + E   K       + G TG  P   +++  +        V   LD   
Sbjct: 184  -SEQLLDVLAQKVERSEKLKNATFYLDGFTGFTPIQRKVLEKLLKIGENVYVGLTLDGRY 242

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR-EDVKRLGNVSNEMYGRSM 325
              + +      + +             Y L KL          D+    +  +    R +
Sbjct: 243  VRSQYREYELFAMSKKEK---------YELIKLAQDAGTPVMPDIICWPDERDSKELRHL 293

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                             +I        +    D+ +    N R+E+ ++A  +   + E 
Sbjct: 294  ---------------EQNIERYPYEIYKDEPEDIKIRCFMNPRQESRTVANEIERFVREE 338

Query: 386  K---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                K   ++TAD +  +           I   +     L        L S+L  I K  
Sbjct: 339  GYRYKDIVVLTADLDSYQNELEKSFDDLHIPYFVDVNRKLLNNPCIETLLSVLKMIQKDF 398

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
             +  +   +K   + F   E            +      N      L S         ++
Sbjct: 399  SYDMVFRYLKSGFSNFTMEEADFLENYVLACGIRGFARWNRPFASKLFS--------DED 450

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                   + R  EE   L   L          L+       +      +    ++     
Sbjct: 451  VGRAEALRIRFIEEVGTLKTGLKRRGSTVKRKLIYLYEFLETLDVEGKMVKKQEMFEASG 510

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
              +            + +  + +  L  ++ E     K +  +++ ++   ++   +   
Sbjct: 511  DLIAAAT--------YAKVYEQVIDLLEQMAEILGEEKFSYDDFLSVLESGLEEMQIGVI 562

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-----LKT 676
                  + I     +R      L   G+NEGV P        ++   +  L      L  
Sbjct: 563  PPSLDQVMIGDMKRTRTEEVKILFFLGINEGVIPAANGGGGVVNDHQREVLETYGINLAP 622

Query: 677  AEKYIGQAAHDFEMANGTR---HLIYTRSLRE-NNIPTIASRWLQRLLVL-------GGT 725
              K        +     ++    L  +  + +        S +++R+  +          
Sbjct: 623  GIKQSAYMEQFYLYLTVSKPTDRLYLSYRMMDAAGNNNRPSYFIERIQRIFPKLKVTMQE 682

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
            +       R +        L           P+    ++                     
Sbjct: 683  EEVQTGYTREEALDQMILCLQEMEFDERDDDPEKMKWMQTLYHALKELEPVGDYVDARFY 742

Query: 771  ----------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                                  S + +++     ++ + +  L+L        +   TD 
Sbjct: 743  TNQALPLSKELIHDLYGDTISGSVTRMEKFAGCAFSHFMQYGLRLRKR--LVHEILPTDM 800

Query: 809  GTLFHNIITELIKKRINKNTPEINHL------MKQIIDSHFEKENLPPHIDIIWRHLFHK 862
            G +FH  +  + K+   K   + +        ++Q +    ++     H +        +
Sbjct: 801  GKVFHKTMELVGKRSDWKFADDASRDEFVELMVEQAVTDIQKELFESSHRNEYVLERMKR 860

Query: 863  ISHS--FLEHEEKIQSSIEKIFVNIPA-------KMAI---ESIGIHLTGFADRIDLLKS 910
            IS    +   +   +         I          M     +   +  +G  DR+D ++ 
Sbjct: 861  ISKRAVWAMEQHIKRGDFTPEEYEIAFGEENHLDSMTFALEDGEKMFFSGVVDRMDSIED 920

Query: 911  GF---VDITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRL 965
                 + I DYK+G            +  QL +   A ++            A +FY  +
Sbjct: 921  DENKYLKIIDYKSGKQKFDFAKIFHGLQMQLIIYMNAMMELYEKKTGKRVYPAGMFYFHM 980

Query: 966  KQKFKIDCITNDKKKYSADEL 986
                      N+ +     +L
Sbjct: 981  DDPIVNVEHENEAEDKILKDL 1001


>gi|227502912|ref|ZP_03932961.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
 gi|227076334|gb|EEI14297.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
          Length = 1059

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 132/1016 (12%), Positives = 265/1016 (26%), Gaps = 180/1016 (17%)

Query: 46   SVTIYVPTKRAIQEL----RSEFIEITGKKSTI--LPIIKSLGDVV-----EEKFTADLL 94
             V     T++A Q+L    R + I++      +   P  ++L ++       + +  +L+
Sbjct: 67   EVLGLTFTRKAAQQLEQRIRRQLIQLRDSGLIVPGSPAAEALNNIAPTVATYDSYAGELV 126

Query: 95   LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
              Y L  PV    R++  A    I  + + +    L  E  L               L  
Sbjct: 127  REYGLLVPVEPSARIITEAERFAIAYDVVKNYGGKLSDEKTLGSITEV---------LLK 177

Query: 155  IIDIIETEEKKWEDLHALKNE----------------KYGMWWLLAA--DFLKI----AS 192
            I   ++   K  +D+     +                +Y            L++      
Sbjct: 178  ITSDMDNSLKDPDDIAEFARDFRADIDNLEKAPRTKGEYSKDLQKYINVQDLRVQYVPLI 237

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMS 247
            +       E    +         R   EH             +++     +  A   L+ 
Sbjct: 238  EELKRTQAEQQVITFGEQMSVAARLAQEHPAVGKQQAQRYRVVMLDEYQDTSYAQRVLLR 297

Query: 248  TV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
            ++         V    D       W   T ++      +   +        +L       
Sbjct: 298  SLFGGEHKDISVTAVGDPMQAIYGWRGATSENLTAFVEDFPQADGTPAPKDQLTTSWRNP 357

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                             S  +  +              ++       K   ++ L    +
Sbjct: 358  -----------------SGALELANSVAAGVFGGGPRPVDELHAAPHKGEGEIELGYFAS 400

Query: 367  EREEAISIAIALRM---SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
            E EE   IA  L+    + + +  ++A++         +   L    +  +I+    L  
Sbjct: 401  EDEEHEFIAQKLKQQWDAREGDGFRAAVLVRTNRQTAAIAAALDAVDVPNEINGLGGLLW 460

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                  L +L   + +  D  A   +   P+   G  +     A+      A +      
Sbjct: 461  QPEIQDLVALATMLVRPEDAQAALRIFAGPICGLGMGDIQALAARQKNLAGAKQERLQWE 520

Query: 484  DIMD----LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
            + MD    L++ +    A   + T           E        +  + +    L   +T
Sbjct: 521  EGMDPEEYLRAQLAQLTAEGPDQTVGLADALADLGERDRYTPQGLARMEEVSAKLRYLRT 580

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
               S   +   +D   +     + +                G T    F+ I+       
Sbjct: 581  YSLSKPLSDLFADIEAIFNIRTEVLARGSAG----------GATHLDKFADIVAGFHGDS 630

Query: 600  A-NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL------------ 646
                ++++++     DG  +      +  + I+   +++ L ++ + +            
Sbjct: 631  LYALLDYLELAREHEDGLELGEVPASTDRVQIMTVHKAKGLEWEHVYVVHADSSSYKAQA 690

Query: 647  ----------GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
                       G N+ +     A                       +AA  F +A     
Sbjct: 691  ETFLSKIEKVPGDNDYIEVSPDAVTRSEFEKACKAFLDDDRAHNAEEAARLFYVALTRTE 750

Query: 697  LIYT-----RSLRENNIPTIASRWLQRLL--------------------VLGGTDFFDNL 731
               T      + R          +L+RL                                
Sbjct: 751  STLTVTGSGTNNRTGKAKKGPYEYLERLKETFPQYVGEWTVPEEPVETSAHAAESGLFPA 810

Query: 732  KKRGQCYLDWTRKL---------------------DYTTKQPHYKRPKPFPPLEAQPRTY 770
             +     L     +                     D       YK  +        P   
Sbjct: 811  LEADPDSLAGADAVLAAMEDLPELSHGETFELWEQDAGALIEEYKSLQQPVVDVELPSEL 870

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            + S++  L +DP    ARR  +               RGT FH  + E           E
Sbjct: 871  TASDMVALGSDPLQF-ARRQRRPVPFKPNSY----AKRGTAFHAWLEERFGSPALLGEEE 925

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
            +                  P ID        ++  SFL  E   +   +  FV  P ++ 
Sbjct: 926  L------------------PGIDEPEDFDLEELKESFLNSEWAQR---QPDFVEAPFEIT 964

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            I S    + G  D +  L      + D+KTG  PK    +     QL++ A A + 
Sbjct: 965  IGSA--VVRGRMDAVFRLADDTWMVVDWKTGRPPKGTAMEAAKI-QLAVYAEAWRR 1017


>gi|270289912|ref|ZP_06196138.1| ATP-dependent helicase/deoxyribonuclease subunit B [Pediococcus
            acidilactici 7_4]
 gi|270281449|gb|EFA27281.1| ATP-dependent helicase/deoxyribonuclease subunit B [Pediococcus
            acidilactici 7_4]
          Length = 1187

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 119/1068 (11%), Positives = 291/1068 (27%), Gaps = 169/1068 (15%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTK---RAIQELRSEFIEIT 68
              S      +   ++     +  R               VP     ++  +L  +  E +
Sbjct: 9    PASVDHLDAVAETIIELQQQQKQRKIYY----------LVPNHIKFQSEIQLLQKLREKS 58

Query: 69   GK-KSTILP---IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
                         I S+  +         +  Y   P ++N    + L R+I+  +++L 
Sbjct: 59   DSAGPVFAQKDIQILSISRLAWFFLRNSSIYQY---PRLTNSSTSMLLYRIIVEHQDELL 115

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL----HALKNEKYGM- 179
                         L  +    + L + +   +   +      E+L      L   +    
Sbjct: 116  -------------LFHNIDAQLGLIQEITSQLAEFKQGNVSPENLSQIIDQLAENEDPQL 162

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
              +     L I    + E + +           AL    A+  M       +I+G +   
Sbjct: 163  DLMAKLHDLNIIYTAYDEAI-QQKFVDSSDILRALTDQLAK--MDLHAQSFVISGFSNFT 219

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
                 L+ T+       ++                         +         +   KL
Sbjct: 220  AEELNLIQTLIKANATVVI----------------DLVMERNPLNEKLSENSLFFENEKL 263

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
               ++    +          +  + +      L           +      N  +  + V
Sbjct: 264  FFKINEWARENGIQVVSPRVVTKKRVNDDLRKLERYWVASTQGQLGL----NGHEQNNSV 319

Query: 360  ALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVK-LELTRFGINID 414
             ++E ++   E   +A A+R  +      N    +++T   +    +      +F I I 
Sbjct: 320  EVLEFNSRYAEVEHVATAIRQMMTKDDRLNFSDFSVLTRHLSDYDTIIKPIFDQFDIPIF 379

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK----YLSRAKNA 470
                + +       ++ +L +   +   +  +  L+K  L +             ++   
Sbjct: 380  YDMQVAMKNHPLLELINALFDVQKRHFRYEDVMRLLKTGLLRPENDADPDGKDFVKSVQI 439

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--RLSEEDKELAVLLVDHIL 528
             E   LR        +        R             +   R   E K+  V  V+   
Sbjct: 440  TENYVLRQGIYGSKWLQKAPWQYQRFNDVDMEQQTDEEREINRRINEIKDYVVKTVNPFF 499

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
              +           +    L  +   +  +        D +        E+  +T  ++ 
Sbjct: 500  NQLAVAENGAEAAKALYQFLMRNHVDQRLLAWRDQWIEDGNLAKAA-EPEQTWETFVTML 558

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
             + ++       ++  +I ++    +  T          + I  +   ++++   + + G
Sbjct: 559  DEFVDILGDQPFDSNNFIGLLNAGFENATYSQIPSTLDQVLISESGMVQMMDRKVVFIIG 618

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTA---------EKYIGQAAH--DFEMANGTRHL 697
              +   P+    N FLS+  ++ ++ + A         E+ + Q  +        G++ L
Sbjct: 619  ATDRAMPEQIQDNDFLSQEGKAQVSDQLADDQFLKMSNERQMRQEPYLNYLTFMIGSQRL 678

Query: 698  IYTRSLRE-NNIPTIASRWLQRLLVLGGTDFF---------------------------- 728
            I+T   R  +      S +++R+      +                              
Sbjct: 679  IFTYPKRGNDGTDFKLSPYVERIKAYFEIEVQCLPSRPAVDQPLIQPFIGSKRSTLSHLV 738

Query: 729  -------DNLKKRGQCYLDWTRKLDYTTKQPHYKR---------------PKPFPPLEAQ 766
                   ++ +     +      L+        +R               P     L   
Sbjct: 739  QYARSMKESKQPADVRWNLIYSILEAGRWHDLTERLMGSLSYKNVPRKLKPDIVTQLYGD 798

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
                S S++++   + Y+ + +  LKL        D    D G  FH  +  L+K     
Sbjct: 799  KIYASVSKLEEFFRNEYSYFLKYGLKLQERET--ADLSPADTGQYFHAAMDNLVKVITQA 856

Query: 827  NT---PEINHLMKQIIDSHFEKENLPPHIDII--------WRHLFHKISHSFLE--HEEK 873
            +          +KQ+     E        D           R+   +   + +    ++ 
Sbjct: 857  DLNFNEVNQTQIKQVTKRVLENMRQDSQFDQFNSTYRMGYLRNQLDRTVETMVTAIFKQL 916

Query: 874  IQSSIEKIFVNIPAK------------MAIES-IGIHLTGFADRIDLLK-SGF--VDITD 917
             Q+ +  I                     +     +++ G  DRID +   G   + + D
Sbjct: 917  AQTRMRPIASEQMFGQIGLKEGLPALNFKVNGKQEVNVRGKIDRIDKINIEGQPYLGVVD 976

Query: 918  YKTGDNP-KKETAQKLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962
            YK+         A   +  Q+ L    ++         +  ++++  Y
Sbjct: 977  YKSSTRKFDFADAYYGLAMQMLLYLDVVQQNRQRIDPHEQARLSSALY 1024


>gi|313617558|gb|EFR89884.1| ATP-dependent nuclease subunit B [Listeria innocua FSL S4-378]
          Length = 1157

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 120/951 (12%), Positives = 278/951 (29%), Gaps = 134/951 (14%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
                 LA +   ++ EE   ++L                  + +  + + E L       
Sbjct: 116  GFYSELAKLFKEMKQEEISVDELEK-SAANLSTSVSSKVHDISLIYQKYEELLA--GKFL 172

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 + L+  +        +  III G T        ++  +    +   V   L+   
Sbjct: 173  ENEDYLRLLADKIIESDYLNQTEIIIDGFTSFSKQELTVIEKLMQKCDKVTVSLTLNV-- 230

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               I   + + S    S+         ++L ++     I+ E  K L             
Sbjct: 231  -PEIHKGLEDFSMFKASTEAY------FALLEMAKLNKIQVEPEKILLENKRANSDSLAF 283

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--E 384
            ++ ++              +NK  + +   +D+ + +A+N R E   +A  +R       
Sbjct: 284  LANAW-------------GDNKYSSYEGGANDLTIHQANNRRAEMEGVAREIRQLALNGY 330

Query: 385  NKKKSALITADR-NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
              +  A++T +  +     +  +  F I I I     ++       + S ++AI     +
Sbjct: 331  RYRDIAILTRNIGDYDILCETVMESFDIPIFIDKKRAMAKHPFIEFIRSSIDAILFNWKY 390

Query: 444  MAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              I   VK             + R  + LE   L     +    + +   + R     + 
Sbjct: 391  EPIFQAVKTEFFFDVAGNATIMRRKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLST 450

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT-------- 554
              +P      ++E+     ++ +     + PL T + N       +  +           
Sbjct: 451  NVLP-----QTDEELATQSVINEMRNLIVEPLSTLENNITKAKTGIEFAMALYHYLEQVK 505

Query: 555  -KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                +   + V  +          E+   ++S L  + +E     + +   + +IIT  +
Sbjct: 506  AVEHLESWRQVAEENGYLELAREHEQAWSSISELLDEFVEVLGEEELDVNSFSEIITTGL 565

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            D             + +     ++LLN   +   G+N+GV P        LS   +  L 
Sbjct: 566  DALEFSLLPPSLDQVVLADMENAKLLNMKVIFAIGMNDGVMPLRQKDKGILSDQDRDSLR 625

Query: 674  L------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI-------------- 711
            +       +A+  IG+            +  L  +    +     +              
Sbjct: 626  VENSNLKPSAKNNIGEEDLLAYKIMSLPSDKLFLSYPAADEEGKVLSXXXYLRKIKGQFK 685

Query: 712  ---ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL---------------------DY 747
                S +L    +L   +    ++ +       T +L                     + 
Sbjct: 686  NLNESVYLTDPSLLNDKEQSSYIRSKQATLGLLTSQLQMYKRGYPLSNVWWDAYNSYFED 745

Query: 748  TTKQPHYKRPKPFPPLEAQPRTY---------------SFSEIKQLINDPYAVYARRILK 792
            + +    K+       E + +                 S S +++  +  +  +A+  LK
Sbjct: 746  SKESEAAKQVLSSLYYENKTKPLQETTAKNLFGENIHASVSRMEKFFSCEFQHFAQYGLK 805

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSH 842
            L+            D G +FH  +  +                +   ++  L    +   
Sbjct: 806  LEER--AHYKLQAVDMGEIFHGAMEWISAELKRTNRDWGNLTEEECRQMAKLAMTFLAPK 863

Query: 843  FEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIH-- 897
             + E L         ++   +I      + +E+   S+   I + +   +  +   +   
Sbjct: 864  IQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPIGLEVDFGLKGDIPPLKIP 923

Query: 898  --------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALK 945
                    L G  DRID  +      + I DYK+  +          +  Q+      + 
Sbjct: 924  LQSNSELLLQGRIDRIDAAEQDDRTFLRIIDYKSSSHDLALTEVYYGLALQMLTYLDIVV 983

Query: 946  AGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              +   I    + A + Y  +  ++         +  + +      +K LI
Sbjct: 984  TNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIARELQKSSKMKGLI 1034


>gi|254514375|ref|ZP_05126436.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
 gi|219676618|gb|EED32983.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
          Length = 885

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 99/738 (13%), Positives = 227/738 (30%), Gaps = 69/738 (9%)

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
             ++S+  LPP    +        ++    +      +   ++   E    A   R  L++
Sbjct: 184  ALLSQDDLPPLHQALCEASTSWQRVTLPVQTARHQPIRSFNDPAAELQMAAHWCRQKLEQ 243

Query: 385  --NKKKSALITADRNLARRVKLELTR---------FGINIDISAGIPLSTTLHSSILTSL 433
                + + +++       R++  L +           + ++ S G  L           +
Sbjct: 244  DPQGRYAVVLSDMHADRDRLEYYLRKEFACLTKNYASLPVNFSTGFTLDRVPLVRDALRI 303

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                        + ++++    +     K              R       + D+   ++
Sbjct: 304  FEFGLPEVTVENVISILQSRFIRPLSYRKDKRERCIRRLRELARERIPQRVMRDVLDDLI 363

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
            D+                                      ++   TN          S W
Sbjct: 364  DKGMGAA-----------------------------PWDAVLQLDTNGRWQRRARPPSQW 394

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
             +     L      +   L +L +++  +   +L +              E +  +  L+
Sbjct: 395  LEPFRAILAAWGWSQGAALDSLEYQQALQWQEALDAFATLDLFTGALTFAEAVQSLRELL 454

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
              +  +P+ E  + + +LG LE+  L FD + + G++   WP     NP+L   +Q +  
Sbjct: 455  SEQQFQPRTEDQA-VQVLGPLETTGLRFDAIWITGMSADRWPAAAQPNPYLPHSLQREQG 513

Query: 674  LKTAEKYIGQA---AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
            +  A+    +    A   +   G   +  +   + +    + S  +  +     ++ +  
Sbjct: 514  MPHADAGWERRWAKARWDQWVAGAGEIQTSYLSQRDGAEALPSPLIAVVPGCVESEDWAM 573

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
             ++       W  +           +P P    E   +    S ++Q    P+  +A   
Sbjct: 574  DRR-------WLAQASTAAFDAVDLKPVPLTEDERAYQGVGASVLEQQSACPFQAFAATR 626

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE--INHLMKQIIDSHFE---- 844
            L+    P        ++RGTL H  + +L     +        +  ++  I+   +    
Sbjct: 627  LQAMQTPTLAAGLLPSERGTLLHRALYDLWGSLGDSAGLALIADEALRAAIERAVDYAQG 686

Query: 845  ------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                   + +   +  + R     +   +L  E +            P +  +    + L
Sbjct: 687  GLLKERLDVVGGDLLSLERQRLDVVLRRWLALERERSDDFAVTGREEPREHQL--GELRL 744

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
                DRID L  G   I DYK+G      K   ++   PQL L A      +       K
Sbjct: 745  RLRIDRIDQLHDGAKLIIDYKSGAIGSVNKWFEERPSRPQLPLYALLTPPAAGIAYASLK 804

Query: 957  VANLFYIRLKQKFKIDCITNDKKKYSADEL--SEKSLKNLIEIVTLLQNGEQPFISHLRL 1014
                 +  + ++  I  I + +K  S +E+        +    +TLL +      S +  
Sbjct: 805  PGAEGFRGVGEREFIKGIDSAEKHLSDNEVGGMTALRAHWTRELTLLADEFVAGHSAVDP 864

Query: 1015 SEKSNIQSEYDHLARVAE 1032
            + ++    +   L R+ E
Sbjct: 865  TVEACRYCQRFSLCRLGE 882


>gi|94987516|ref|YP_595449.1| endonuclease [Lawsonia intracellularis PHE/MN1-00]
 gi|94731765|emb|CAJ55128.1| RecB family exonuclease [Lawsonia intracellularis PHE/MN1-00]
          Length = 979

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 94/714 (13%), Positives = 208/714 (29%), Gaps = 105/714 (14%)

Query: 382  LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL---NAIF 438
             ++ +  +A++  +      +   L     N +IS G PL+ +L   +L ++        
Sbjct: 304  HEDIQTSTAIVLTNSKSLLPILHHLP--HKNCNISLGYPLNKSLLFRLLENIFKIRELQQ 361

Query: 439  KLND--FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            +     + ++  L++HP  +F   + +   +        +   +   D+      V    
Sbjct: 362  EDGTIYWKSLLHLIRHPYLRFLKIDGFELYSLLHKLEQWIVNGQKYIDLNMFFREVEY-- 419

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                          +  +  +   +LL   I   +   +T  T           +D+  +
Sbjct: 420  ----------EQPHKKYDFSESECLLLKQLIKVTVENCITIDTLAK-------FADFLSI 462

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                L     +  ++ P             + +      +    +      ++  LI  E
Sbjct: 463  LCDFLLQFGYESWQRFPLDAECLFRLVHKVIPALKDNRMAHTVLSWDLLQSMVVALIHDE 522

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
             V  + +  + L +LG LE+RLL+F  + L  + +   P N  ++  L   ++  L L  
Sbjct: 523  RVPFEADPITGLQVLGMLETRLLHFSKVFLIDVTDDQLPGNPIRSSLLPDSLRKILGLPN 582

Query: 677  AEKYIGQAAHDFEMANG-TRHLIYTRSL-----RENNIPTIASRWLQRLLVLGGTDFFDN 730
            A       A+ F       + +                    SR+++ +L         +
Sbjct: 583  AHDRDVLTAYTFYRLLAGAKEVYLYWQEGIEVSNSFEGKKQKSRFVEEILWE-EEQSIGS 641

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKP--------FPPLEAQPRTYSFSEIKQLINDP 782
                G   L+           P  +R +                    S +++   +  P
Sbjct: 642  QITPGDYILNIA----KPEVSPPLRRRRHIIKTPAIQRQLNSILSHPVSATQLDTYLMCP 697

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN---TPEINHLMKQII 839
               Y  R+  +  +    +D D    G L H ++       + K        N  ++ + 
Sbjct: 698  LRFYFERVAMVRPVEVVNEDDDPASVGQLLHKVLKVFFMDYVGKECIKEDLSNERLRMLF 757

Query: 840  DSHFEKEN-----LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNIPA--KMAI 891
                          P    ++      K+   FL      Q      I++       + I
Sbjct: 758  KEELLSSGLINSLPPESSMMLSLSGPEKLV-RFL----SRQPDKTKIIYLEKYFQATLQI 812

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP----------KKETAQKLIDP------ 935
                  L G  DR+D   +  V I DYKTG                +  +  D       
Sbjct: 813  NGNTRVLEGILDRVDKRGNEGVIIFDYKTGRIKNNSDKLWQDESIWSNLESFDLTSCIEH 872

Query: 936  ------------------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
                              QL       +          ++ +  +I L +      +  D
Sbjct: 873  PEKADELLFTLSEKISTIQLLYYIYLYR-----DATGEEIQDAAFISLGEDGAEYWLMRD 927

Query: 978  KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE-KSNIQSEYDHLARV 1030
                  +++    +  L++ +         +   +R  E +      +++L +V
Sbjct: 928  LAANIKEDIILNKIPKLLKFLLYHME----YRLEIRPHEGRHCNWCSWNNLCKV 977



 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 72/270 (26%), Gaps = 29/270 (10%)

Query: 4   KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63
           + P    I     F   +   ++  T              L    +     R  + L + 
Sbjct: 2   QGPPFLIIPWERDFLECLSSIIIKETDG-----------HLDKAAVIFMHDRPRRYLTAY 50

Query: 64  FIEITG-KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
           F +     K  ILP I ++ ++        L    +L      + ++  L   +      
Sbjct: 51  FQQHPELSKPCILPYILTIQEL---LSCLYLEQHTSLCYEAGLLDQVDLLFSCVEQLSAL 107

Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
              +   L     +               LA + +   T+  K  DL      +   +  
Sbjct: 108 NVSLFNLLSKGGEVG-------FFPWGLQLASVFEECFTQGLKPRDLLY-TEGEVAPFGT 159

Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT----KGPIIIAGSTGS 238
                L      + ++L +   ++P      L     +          +  I +AG +  
Sbjct: 160 ALLASLGQIFLLYKQKLEQEGMTTPALKAYVLAEQIRQSTFDLPSFLKQKSIFLAGFSTL 219

Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                 +   +     GA +   +D  +  
Sbjct: 220 TGTENIIFRYLWE--KGAKICLHVDSSLAD 247


>gi|289435608|ref|YP_003465480.1| hypothetical protein lse_2247 [Listeria seeligeri serovar 1/2b str.
            SLCC3954]
 gi|289171852|emb|CBH28398.1| addB [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 1157

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 124/967 (12%), Positives = 288/967 (29%), Gaps = 139/967 (14%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L  +  L +     +       LA++   ++ EE    DL     +            
Sbjct: 97   AALDQKEKLKVFSRATSRKGFYSELANLFKEMKQEEVSITDLEE-SAKMLPTSVNNKVHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + +  + + E L            + L+  +        +  III G          ++ 
Sbjct: 156  ISLIYQKYEELLA--GKFLENEDYLKLLADKIAESDYLNQTEIIIDGFNSFSKQELTVIE 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   +   L+      I   + E S    S+         YSL +     +I  
Sbjct: 214  KLMQKCDKLTISLTLNV---PEIERGLEEFSMFRASTEAY------YSLLETAKLNNIPV 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E++K L             ++  +                   + Q   +++ + +A+N+
Sbjct: 265  EEIKLLLENKRAKTPPLEFLANVWGQNKF-------------ASFQGETTNLNIHQANNK 311

Query: 368  REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   IA  +R       +    A++T +  +     +  +  + I I I     ++  
Sbjct: 312  RAEIEGIAREIRELTSNGYRYKDIAILTRNLGDYDVLCETVMEDYNIPIFIDKKRAMAKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG-FPEKYLSRAKNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK             + R  + LE   L     + 
Sbjct: 372  PFIEFIRSSLDAIQFNWKYEPIFQAVKTEFFFDSAENAADMRRKSDILENYVLENGIQNK 431

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
               + +   + R         +       ++E+  +  ++ +   + +TPL T + N   
Sbjct: 432  WKWEKEGDWIYR-----KIRGLSINVLPQTDEELNIQNMINEMKNRIVTPLSTLEINLAK 486

Query: 544  TCGNLSISDWT---------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                + ++               +   +    +          E+   ++++L  + +E 
Sbjct: 487  AKTGIELALALYHYLEQVQAAEHLEAWRRTAEENGYLELAREHEQAWTSITALLDEFVEV 546

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                      +++II   +D             + +     ++LL+   +   G+N+GV 
Sbjct: 547  LGEESLELSSFMEIIITGLDALEFSLLPPSLDQVILSDMENAKLLDMKVIFAIGMNDGVM 606

Query: 655  PKNTAKNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLREN 706
            P        LS   +  L         +A+  IG+            +  L  +  + + 
Sbjct: 607  PLRQKDKGILSDQDRESLREQNSSLKPSAKNNIGEEDLLAYKIVSLPSDKLFLSYPVADE 666

Query: 707  NIPT--------------------------------IASRWLQRLLVLGGTD-FFDNLKK 733
                                                  SR+++      G       + K
Sbjct: 667  EGKVLSESNYLRKIKGQFKNLNEEIYLTDPSLLSDEEQSRYIRSKRAALGLLTSQLQMYK 726

Query: 734  RGQC-----YLDWTRKLDYTTK---------------QPHYKRPKPFPPLEAQPRTYSFS 773
            RG       +  +    D   +               +    +      L  +    S S
Sbjct: 727  RGYPLSNVWWDAYNSYFDDKKESKNAKQVLSSLYYENKTEALQEATAKGLFGEDIHASVS 786

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP---- 829
             +++  +  +  +A+  LKL+   HF+      D G +FH  +  + ++    N      
Sbjct: 787  RMEKFFSCEFQHFAQYGLKLEERAHFQ--LQAVDMGEIFHAAMEWISEELKRNNLDWGNL 844

Query: 830  ------EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEK 880
                  E+  L  + +    + E L         ++   +I      + +E+   S+   
Sbjct: 845  TVEECKELAKLAMKFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRP 904

Query: 881  IFVNIPAKMAIESIGIH----------LTGFADRIDLL-KSGF--VDITDYKTGDNP-KK 926
            + + +   +  +   +           L G  DRID+  +     + I DYK+  +    
Sbjct: 905  VGLEVDFGLKGDIPPLKIPLQSNRELLLQGRIDRIDVAEEDNRTFLRIIDYKSSSHDLAL 964

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADE 985
                  +  Q+      +   +   I    + A + Y  +      +     +K+ + +E
Sbjct: 965  TEVYYGLALQMLTYLDIVVTNAQKMIGKSAEPAGVLYFHM-----HNQFVQAEKELTEEE 1019

Query: 986  LSEKSLK 992
            L+++  K
Sbjct: 1020 LAKEIQK 1026


>gi|325963969|ref|YP_004241875.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
            Sphe3]
 gi|323470056|gb|ADX73741.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
            Sphe3]
          Length = 1115

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 135/1096 (12%), Positives = 280/1096 (25%), Gaps = 152/1096 (13%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
            AP +     ++ A ++    +    +         + I  P++ +   LR  F     + 
Sbjct: 84   APGTGKTTVLVEAAVSRVFRDGVDPE--------RMLILAPSRLSADALRDRFTARLDRS 135

Query: 72   STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
             +  P  ++      +              P+S+  RLL      LI +  L        
Sbjct: 136  LSTTP-ARTWASYAFDVIRRAKAEGI---LPLSSAPRLLSGPEQDLIIKELLEGHRLPGL 191

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                              + +  + D I    +  EDL  L ++     W+ AA      
Sbjct: 192  ELPWPEDVEGALETRGFRQEVRQLFDRIIESGRTPEDLVRLGHQCGRPDWIAAAALYAEY 251

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLM 246
                  R+ E  A  P G   A  +   +        +     I++     + PA   L+
Sbjct: 252  RDVLDLRMPE--AFDPAGIITAARQIFQDAPGFLAAERDRLQVILVDDIQEANPAVFELL 309

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
               A+   G               +               + ++        L       
Sbjct: 310  ---ADVAGGKDCYVAFSPDTVVQGFRGARPDLVAELPRLLSPNS--PVVERPLRYAHRHA 364

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
             E  +    ++  +  R                           + ++    V      +
Sbjct: 365  PELAEAWLGLAGRISQR---------------AGGQLARRLDKLDGEQPSGAVEAHLVQS 409

Query: 367  EREEAISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDIS-AGIPLS 422
               E   +A  +      + +     A+I  + +     +  L+  GI + +  A   + 
Sbjct: 410  AVHELRYVAQRILDQHINHGRDLAQLAVIVRNGSQVSEFQRYLSGQGIAVRVPVAESAVR 469

Query: 423  TTLHSSILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
              +    L                A  +L+   +      E    R     E +   G +
Sbjct: 470  DEVAVRPLLDAFAIALDPDLLTPEAAVSLLTSRIGGATSIELRRLRQSLRREELLGGGGR 529

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
             S              A        P   S L  E +                       
Sbjct: 530  TS-------------DALLVEALLEPGALSTLGIEGRAARRTARMIQAGRTAAAEPGANA 576

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
            ++      + +   +              R   +L         +  +   +        
Sbjct: 577  ESVLWALWNSTGLDRAWTETALAGGPHGARADRDLDAMMALFHTAERYVDQMPGAG---- 632

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                   ++ + +  +T+  + +    + +L    +    +  +I+ GL EGVWP    +
Sbjct: 633  PEQFLEYLLNQELPMDTLAARAQVDDAVELLTPASAAGREWPVVIIPGLQEGVWPNTRLR 692

Query: 661  NPFL-------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
               L             +  +Q D   +  +    +        +  R L+   ++  ++
Sbjct: 693  GELLGSTLYSDAVEHGAAYALQRDPLSRLRDIRYDELRSFSTAVSRARELLVCTAVSSDD 752

Query: 708  IPTIASRWLQRLLVLGGTDFFDN--LKKRGQCYLDWTRKLDYTTKQP------------- 752
                 S +L  +  L            +R         +L    +               
Sbjct: 753  --DQPSSFLDYVAPLPPDQDGRPFTAVERPMTLRALVAELRQHAQLDGKETPQAEEAARV 810

Query: 753  ----HYKRPKPFPPLEAQPRTY------------------SFSEIKQLINDPYAVYARRI 790
                    P                               S S+++ +   P   + +  
Sbjct: 811  LAHLAAAEPPVAGAHPQSWWGLLPLTSSEAVVPPAGTVFVSPSKVETVQKSPLDWFVQAA 870

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
                              GTL H I  EL       + PE    + +   +   K+N   
Sbjct: 871  GGEAATDF------ARSLGTLVHAIAQEL----PEASGPEYVAELVRRWPALGMKDNWEG 920

Query: 851  HIDIIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIESIGI--------HLTGF 901
                +       +     ++           + V    ++A+  I +         L G 
Sbjct: 921  ---RLDFQRAEAMVRKLAQYVLLMRSEGRSLVGVEQDFEVALGRIPVDGAGDREAVLRGQ 977

Query: 902  ADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFS---QIDCRK- 956
             DR++L   G + I D KTG   P K    +   PQL    AA+ AG F     +     
Sbjct: 978  VDRLELDSEGRLVIVDLKTGKRQPSKGELSRH--PQLGAYQAAVLAGGFGSGMDLPAAPL 1035

Query: 957  VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016
                   +L    K   I    ++    +  E    ++++    +  G   F +    S+
Sbjct: 1036 PGGAVLAQLGTGAKNPAI----QQQDPIDPQENWAMDMVKEAAAVMGGSA-FEARHDPSK 1090

Query: 1017 KSNIQSEYDHLARVAE 1032
             S+      H  R+ E
Sbjct: 1091 SSHGG----HGCRLPE 1102


>gi|300114628|ref|YP_003761203.1| putative DNA repair protein [Nitrosococcus watsonii C-113]
 gi|299540565|gb|ADJ28882.1| putative DNA repair protein [Nitrosococcus watsonii C-113]
          Length = 912

 Score =  189 bits (479), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 109/680 (16%), Positives = 198/680 (29%), Gaps = 64/680 (9%)

Query: 377  ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             +   L+  + + A I  D      V     R     ++S   PL+ +        +L  
Sbjct: 257  IIVPELEFLRAQVARIFDDVFHPEAVLPGRGRMERAYNLSLAQPLADSPLVHTALLILEL 316

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                     +  L++ P       E                          L + +    
Sbjct: 317  SKGELSMAEVGALLRSPFVGAAEQEFSHRAL--------------------LDAYLRKTR 356

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                +   +        EED                 L  +K   +S       S W + 
Sbjct: 357  EETVSLERLWKAAITAREEDAA-----HHGYPVLGEGLQQFKAEVDSLPARQPPSGWVQS 411

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                LQ +     R L +  ++       S  S                I    RL+   
Sbjct: 412  FTRWLQMLGWPGERPLDSEEYQAVSAWHKSTQSFSSLDRVVPSLKKNAAIGKFRRLLMET 471

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK- 675
              +P+      + ++G LE+    FD   L GL++G+WP     NP L   +Q    L  
Sbjct: 472  LFQPENPIVP-VQVMGVLEAAGEQFDAAWLLGLHDGIWPMAPRPNPLLPIDLQRRHRLPH 530

Query: 676  -TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
             +AE+ +       E        +I +   RE +     S  +  L            + 
Sbjct: 531  ASAERELAYTRVVTERLLASAPMVIVSHPCREGDKDLRPSPLIAEL------APVPPERL 584

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
            +      +  ++  T +       +  P             +K     P+  +A   L  
Sbjct: 585  QLASVDAYVNEIQRTGRMETLVDAQGPPLEAGTQVAGGTGLLKAQAACPFRAFAEYRLGA 644

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI--NHLMKQIIDSHFEKENLPPH 851
              +       +  D+G L H  +  L +K  N++T        ++ ++    ++      
Sbjct: 645  KRLEEPSVGLEALDQGILIHVALQYLWEKLQNQHTLLSCNAEELQALVAKAAKQAIATQT 704

Query: 852  IDIIWR--HLFHKISHSFLEHEE-------KIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                      F  I    LE          K +     +         +   G+ L   A
Sbjct: 705  AVRPQTFTERFTAIEQERLEQLLLEWLERDKQRPPFAVLHQEKSQ--PLNLGGLSLDTRA 762

Query: 903  DRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAA----LKAGSFSQIDCRKV 957
            DRID L+SG   I DYKTG + P+    ++  +PQL L        L A  F+Q+   + 
Sbjct: 763  DRIDQLESGERVIVDYKTGRSNPRHWFGERPEEPQLPLYCITHKVPLAAVLFAQVRRGET 822

Query: 958  ANLFYIRLKQKFKIDCITN-----DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
                Y+ + ++                  S +EL  +  + L  +   +      + +  
Sbjct: 823  K---YLGVTKEEGSIPEVAIFTRVADGLDSWEELLARWSQVLHALAAEVM---AGYAAVA 876

Query: 1013 RLSEKSNIQSEYDHLARVAE 1032
                 S        L R+ E
Sbjct: 877  PRDANSCDYCALPGLCRINE 896


>gi|86742479|ref|YP_482879.1| UvrD/REP helicase [Frankia sp. CcI3]
 gi|86569341|gb|ABD13150.1| UvrD/REP helicase [Frankia sp. CcI3]
          Length = 1103

 Score =  189 bits (479), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 132/1041 (12%), Positives = 263/1041 (25%), Gaps = 118/1041 (11%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             TLVE             S+ +   ++RA  ELR       G +          G     
Sbjct: 55   ATLVEAVAARIEAGADPRSILVLTFSRRAAGELRERITARLGAEGGAG---GGPGAWTFH 111

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
             +   LL ++    P   + RLL         R+ +    +D  P  P    +       
Sbjct: 112  AWCLALLRAHERPAPPGGL-RLLSGPEQDSRLRDLIEGSREDGRPVWPE-PLVGCLRTRG 169

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
              + +  ++        +   L  L        W   A+F ++    +            
Sbjct: 170  FTEEVRALLARAREVGLEPVALAQLARRTGRPDWAALAEFYEMYLDVFGFEGAVDYTDLV 229

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                +    AE    ++G    + +     + PA  RL+  VA      +     D    
Sbjct: 230  HRAVVVAESAEGGAWLRGRYRHVFVDEYQDTDPAQERLLEAVAGGGGNLV--VLGDPDQS 287

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               +            +               +  L   R         S  +  R    
Sbjct: 288  IYAFRGAEVAGLLGFPARFPRLD----GEPAPIVALRRCRRMAPAPLAASRHVARR---- 339

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK- 386
                +P     +       + +         V          EA S+A  LR    EN  
Sbjct: 340  ----IPAAGLPVAAIRAHRDLVGRADAGAGQVQARTFPGTGAEAESVADLLRREHLENGV 395

Query: 387  --KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKL--- 440
                 A++        R++  L   G+ +       P++    +++L   L         
Sbjct: 396  AWDAMAVLVRTAERIGRLRRVLAAAGVPVSADGDDLPVAQEPAAALLLLALRCAEDPAGA 455

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
                A  TL+  PL         L     AL  +                        + 
Sbjct: 456  LTVDAARTLLTSPLGG--ADPAGLRALGRALRTLERDAGSEHP--------APSAELLRA 505

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS-TCGNLSISDWTKLTVT 559
                  HW + + ++       +   +      L               S S+W      
Sbjct: 506  AVAEPDHWLATIPDDLAGPVRRVGGLLRTAGQALRDSSGAPQDALWALWSASEWPARLRH 565

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                          +L          +   +    G  +   A    ++  + I G+ +K
Sbjct: 566  ASAAGGAAGRAADRDLDAVVALFDAVTRLGQRRGPGGGV---ASLVAELTRQQIAGDVLK 622

Query: 620  PKIE--KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL--- 674
            P  E  +   + +L    ++ L ++ +++ G+ +G WP    ++  L        +    
Sbjct: 623  PAGESVRRRGVRLLTAHRAKGLEWEVVVVCGVQDGTWPDLRERHSLLGAEQLDAPSRGGL 682

Query: 675  ---KTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
                T +  +      F +A     R L+ T      +  ++ SR+L+ L V    +   
Sbjct: 683  RPPLTRQDLLADERRLFYVALTRARRRLVVTAVNSPEDDGSLPSRFLEELGVAV--EHVP 740

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPH----------------------YKRPKPFPPLEAQP 767
                R    +     L     +P                         RP          
Sbjct: 741  GRPARPLTLVGLVATLRRLATEPDSSPVMRSAAQARLAALAAARDQAGRPLVPAAHPDTW 800

Query: 768  RTY-------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                                  S S +  +       +                      
Sbjct: 801  WGLLDPTTSDVPVVPVAGPIRLSGSSLSSIGACSLRWFLEHEAYA-----VTPASTAQGF 855

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            G + H +  E+   R   +   ++  +  +              +             + 
Sbjct: 856  GKVVHALADEVTTGRTPADLAALDARLDTVWRQLDFDARWRSDQERAAAREALARFLDWH 915

Query: 869  EHEEKIQSSIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
              E   +     I   +     + +    + L GF DR++L ++G V + D+KTG     
Sbjct: 916  AAERGRR----VIDAEVRFSCDLRVAGRDVQLRGFIDRLELDEAGRVHVIDFKTGRT-AV 970

Query: 927  ETAQKLIDPQLSLEAAALKAGSF-------------SQIDCRKVANLFYIRLKQKFKIDC 973
              A+    PQL     A++AG+              +            ++L++      
Sbjct: 971  APAELATHPQLGSYQLAVRAGALDDVLAAAAPDQPGADQPRAVPGGAELVQLRRDAGAAA 1030

Query: 974  ITNDKKKYSADELSEKSLKNL 994
                           ++   L
Sbjct: 1031 AGPRLPGERPGPPEVQAQSAL 1051


>gi|225020702|ref|ZP_03709894.1| hypothetical protein CORMATOL_00709 [Corynebacterium matruchotii ATCC
            33806]
 gi|224946648|gb|EEG27857.1| hypothetical protein CORMATOL_00709 [Corynebacterium matruchotii ATCC
            33806]
          Length = 1095

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 128/1079 (11%), Positives = 289/1079 (26%), Gaps = 148/1079 (13%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
            +   +V       ++P     V     T++A Q+L     +  G+ + I P I +L    
Sbjct: 47   MAARVVWLVANGLIDPD---QVLGLTFTRKAAQQLGKRINDRLGQLAGI-PDIAALDPSG 102

Query: 86   E---------------EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
                            + F   L+  + L  PV    R++    L  I    + +   +L
Sbjct: 103  RLANRLRSAGPTTSTYDAFAGKLVGEFGLLLPVEPSSRIISQTELYRIAVQVVNEYEGEL 162

Query: 131  YPESPLSLPISPANAIWLAKNLADII---DIIETEEKKWEDLHALKNEKYGMW------- 180
                     +     + L   L + +     ++ E   +  L                  
Sbjct: 163  SMRHTTGHVVDT--LLTLTAELDNHMVDERELKIESLLFAQLCEELPPAKRQRKKPNQKI 220

Query: 181  --WLLAA----DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGP 229
              W        + L + +K   +RL + N  +         R   E+       +     
Sbjct: 221  LGWQETQFHRIELLPLVTK-LKDRLKDENLVTFGEQMSLAARLAVENPSVGKVLRNRYKV 279

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            +++     +  A   L+ ++     G  V    D       W   T  + N   ++    
Sbjct: 280  VMLDEYQDTSHAQRMLLRSLFA---GGAVTAVGDPMQSIYGWRGATAANLNRFVTDFAID 336

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
              PQ            +      L            + +        +       ++   
Sbjct: 337  --PQ------------EPAVKNELTISFRNPPEVLHLANAVATTVLGAPSDPNRPVQPLS 382

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLE 405
                    D+ L       +E   +A  L    +         +A++         +  E
Sbjct: 383  SPPSAVAGDIQLGYFPTIADERQFVADTLAELYNNRDTAKPFTAAVLVRQNAHTGPIAKE 442

Query: 406  LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
              R GI  +I     L      + + ++   + +  D  A   ++  P    G  +    
Sbjct: 443  FQRRGIPYEIVGINGLLDVPEVADMVAVAIMLIRPTDSAAALRILGGPAVGLGVRDIQAL 502

Query: 466  RAKNALELVALRGNKNSYDIMD---LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
              +           K +  +     L+  + + +A    N            E ++ +  
Sbjct: 503  ARRAGELSGRASSGKTTDSVDPAVKLEEEIAEVLAADAENIVGLTDAIADLGEPEKYSEE 562

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
                + +  + L   +    +      +    +  +     V   E+ +L          
Sbjct: 563  GYRRLGRLSSQLRRLRQTVAAGSSLPDLFAEIERVMGIRTEVLSRENPRLDGAVGTIHLD 622

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             L    +      +   +  +++     R   G  +     +S  + IL   +++ L ++
Sbjct: 623  KLHQEVANFATIPNTTLSQLLDYFTEARRQESGLELGEVQVRSDRVQILTVHKAKGLEWN 682

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVM----------------------------QSDLNL 674
            T+ +   N   + K  A     +  M                            ++ L  
Sbjct: 683  TVCVLHANNRDYDKTRASTWLTNPAMVPSTLRGDAAESGDTVGSPVLDTSWLENRAQLEA 742

Query: 675  KTAEKYIGQ--------AAHDFEMANGTRHLIYTRSLRENNIPT---IASRWLQRLLVLG 723
            + A                  +         +   +   ++        S +L       
Sbjct: 743  ECAAHIEEFRQSLSEESTRLFYVAVTRAAQRLIVTASALDDNERDIEPCSNFLLMKRNAS 802

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL--IND 781
                            D +       + P    PKP   ++         +        D
Sbjct: 803  TDSIVAWHDPAEAAAADTSDGPSEVQQSPIGMFPKPTKTVDLLTGADLVRKAIAQQSAGD 862

Query: 782  PYAVYARRIL-----------------------------KLDFIPHFKKDPDRTDRGTLF 812
            P A      L                             +L          +        
Sbjct: 863  PIAFNQDNDLFQLWEKDVTALIEEYQRLQSDIVEVELSPELTATDIVALKQNPEQFARRQ 922

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHSFLEHE 871
               +     +   + T   + L ++        E+  P +D         ++   F+   
Sbjct: 923  RRPVPFKPNRYAKRGTEFHSWLEQRFGAPTLLDESELPGMDEEITPGQLQELKDKFVA-- 980

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
                +    +FV  P +++I+  GI + G  D +   +SG   I D+KTG  P +   + 
Sbjct: 981  -GQFADRTPMFVEQPFEVSID--GIVIRGRMDAVFRDESG-WHIVDWKTGQLPSRADMRY 1036

Query: 932  LIDPQLSLEAAALKAGSFSQIDCRKV-ANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
            L+  QL++   A        ID  ++ A+ +Y+R  +    D + ++++      L+ +
Sbjct: 1037 LM-MQLAVYRIAWAQ--LQGIDPDEIHASFYYVRYDKLSSADNLPSEREIAETLRLAAQ 1092


>gi|138894262|ref|YP_001124715.1| ATP-dependent deoxyribonuclease subunit B [Geobacillus
            thermodenitrificans NG80-2]
 gi|196248139|ref|ZP_03146841.1| ATP-dependent nuclease subunit B [Geobacillus sp. G11MC16]
 gi|134265775|gb|ABO65970.1| ATP-dependent deoxyribonuclease, subunit B [Geobacillus
            thermodenitrificans NG80-2]
 gi|196212923|gb|EDY07680.1| ATP-dependent nuclease subunit B [Geobacillus sp. G11MC16]
          Length = 1172

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 120/957 (12%), Positives = 248/957 (25%), Gaps = 125/957 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA----LKNEKYGMWWLLAADFLKIA 191
            L L    A+     + L ++I   +      ++L      L++        L AD L   
Sbjct: 112  LKLFGRAADKSGFVEQLHEMIAECKRYCLTPDELRRHAGVLESGSGQPGRRLLADKLSDV 171

Query: 192  SKYWTERLVEL-NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
            +  + E    L          + L+              I I G     P    ++  + 
Sbjct: 172  ALVYEELERSLLGHYLDSEDYLRLLVEHIPRSSYLHGADIYIDGFHHFSPQEYMVIEQLL 231

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
            +      V    D      + + +                +      + L  L +  + +
Sbjct: 232  HRCRRVTVCLTADRPYDVGMPDELDLF-------------YLPAQTYRQLRELALANDIM 278

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                 V +                              +   +     + L EA N R E
Sbjct: 279  IESPVVLSVNRR---------HQDKALAHLEEQFHRRPLLPYEAETDAICLYEAANRRAE 329

Query: 371  AISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLH 426
              ++A  +   + +     +  ALI       R  VK     F I   +    P+     
Sbjct: 330  IEAVAREIIRLVRDEGARYRDIALIIRQTEAYRDLVKTVFFDFDIPYFMDEKEPMHYHPL 389

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDI 485
              ++ + L  +     + A+   VK  L      +      A + LE   L         
Sbjct: 390  IELVRAALETVVTRWRYEAVFRAVKTDLLFPVDGDLAMWREAADKLENYVLAHGVKGEKW 449

Query: 486  MDLKSLVLDR-IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
               +     R  A    N      + +  ++  E    L   + +    L      +   
Sbjct: 450  TSDERWTYRRYQALDGLNVPQTDEERQFEDKLNEWREALAAPLRRLERRLRRAADGRGLC 509

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKL--PNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                   +  ++     Q     E           E+    +  L  + +E         
Sbjct: 510  TALYLFLEELQIPKKLEQMSAQAEADGRLVEARQHEQAWNAVVDLLDQYVEMLGAEPLPL 569

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             E+  II   +D             + +     SRL++     + G+N+GV P       
Sbjct: 570  AEFAKIIEAGLDRLEFALVPPAIDQVIVAQLDRSRLIDVKYAFIIGVNDGVIPAKVKDEG 629

Query: 663  FLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLREN-NIPTIAS 713
             ++ V +  L            + +        +A    +R L  T  L +      + S
Sbjct: 630  LVAEVEREQLRELGVALAPGGREQLFYDPFFVYLALACPSRRLYVTYPLADGEGKALMPS 689

Query: 714  RWLQRL----------------------------------------------LVLGGTDF 727
              +++L                                                 G    
Sbjct: 690  PLIKQLVQLFPRVSVHLCGNDPFDAPEEKPETFVTVPRATQTYLISQLRAWKRNYGIDPL 749

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP-----RTYSFSEIKQLINDP 782
            + ++      + +W  +++       Y          ++         S S ++Q    P
Sbjct: 750  WWDVYNVLISHPEWRARVEQAVSGLFYTNQAVLKREWSRRLYGKKIQASVSRMEQFQKCP 809

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE----------IN 832
            YA +A   L+L     F+   +  D G LFH  I ++  +   ++             ++
Sbjct: 810  YAHFASHGLRLKERNVFR--LEAPDVGQLFHAAIKQIADRVREQHLDWKQLSRSECERLS 867

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHL-FHKISHSF--LEHEEKIQSSIEKIFVNIPA-- 887
                + I    +++ L       +       +      +  E    S    +   +    
Sbjct: 868  AEAVERIAPLIQQQVLSSSNRYEYMKRKLKNVVARTTHVLSEHARASGFAPVGFELSFGP 927

Query: 888  KMAIESIGIHLT--------GFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDP 935
               +  +   L         G  DR+D  +S     + I DYK+             +  
Sbjct: 928  GGDLPPLRFQLRDGTVMELVGRIDRVDKAESSQGVLLRIIDYKSSAKTLDLTEVYYGLAL 987

Query: 936  QLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
            Q+      +   +   +      A + Y  +           D +   A +L E   
Sbjct: 988  QMFTYLDIVLTYAEQLVGEPALPAGVLYFHIHNPIIQAKQWLDNEMEVARKLLEPFR 1044


>gi|19552001|ref|NP_600003.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389664|ref|YP_225066.1| helicase, UVRD/REP family [Corynebacterium glutamicum ATCC 13032]
 gi|21323541|dbj|BAB98168.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum ATCC
            13032]
 gi|41324999|emb|CAF19480.1| HELICASE, UVRD/REP FAMILY [Corynebacterium glutamicum ATCC 13032]
          Length = 1016

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 124/1056 (11%), Positives = 283/1056 (26%), Gaps = 171/1056 (16%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL--PIIKSLGD 83
            ++  +V+            +S+ +   +K A   LR E  E   +   +   P+++S+  
Sbjct: 53   VSSAVVDTVLERIRQGWEPSSMLVVATSKEAASRLRQEISESVAQMDYVSEGPLVRSVHS 112

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            V              L   ++  ++   +  L+            D              
Sbjct: 113  VAFALIRDASDDDVRL---ITGAEQDAVIRELLRGHA--------DDGRGGWPQEQREGL 161

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
              +  A+ L D +          ++L  L        W+ A +FL+     + + +    
Sbjct: 162  RMVGFARQLRDFLLRAVERGVGPDELVELGERFERANWVAAGEFLRE----YKQVMKLSG 217

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
            A S       +  A            + I  +    P +A L+S        A+V    D
Sbjct: 218  AHSFSAS-ELVTEALRGPEPSVKYRGVFIDDAQHLDPKSAELVSRFFPEAELAVV--AGD 274

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +           S +                                      
Sbjct: 275  PQQSVFRFRGANPDFLTKLSVD-------------------------------------- 296

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
               +        ++ +   +        +        LI+  +  E    IA+ +R +  
Sbjct: 297  -HEVVLKGRRKASTSIVVAETESAHADLLADTVRRAHLIDGRSWSE----IAVIVRSA-- 349

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND 442
                          +   +   L   G+ + IS   + L+     + +   L A+ +  +
Sbjct: 350  -------------GMIAPIWRTLLAAGVPVHISPTDVVLAEQRIVAAMILGLRALTESLN 396

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             + +  L+  P+         L R    L    ++       I  L+SL+ +  A     
Sbjct: 397  AIELEDLLLGPIGG--ADPVTLRRLLRGLRQAEMKMGGQRRAIEVLRSLLAESDAEM--- 451

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                     L++ +  L   +   +      L  + + +       S +D +        
Sbjct: 452  ------LGFLTDRELNLLERVRSVLEAGREALAEHGSIEEVLWALWSATDLSNSLSAISL 505

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                   +   +L         +  + +   +           + I  + +     + + 
Sbjct: 506  RGGASGSQADRDLDAMMALFDAAGDYVERYPSAGVRSF----ILHISEQELPTGMRERRG 561

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK------- 675
                 + +L    +    +  +I+  + EG WP        L +    DL  +       
Sbjct: 562  AIPEAVEVLTAHATTGREWKRVIVAEVQEGSWPSLGETGTLLGQEEFVDLVDEGIDPDII 621

Query: 676  ---TAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRL---------LV 721
               +AE+   +    +     +   +   ++   +++     SR+L+ L           
Sbjct: 622  ISRSAERLAEERRLFYLATTRSTESLLVTAVNSPDSDEVREPSRFLELLSQPIVVLEGEE 681

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------------------------- 756
                   + +  R         +L      P   R                         
Sbjct: 682  ASAIAEPEEIGHRLLSIPAMVAELRRVVNDPRDPRRKQAARQLSRLAEAGIPGANPAEWT 741

Query: 757  ----PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                P     L     + S S I+QL+N P      R      +   ++ P    +GTL 
Sbjct: 742  NLRTPSTDEELIKGAVSLSPSRIEQLLNCPLRAVLDR------LDSEEETPIAMLKGTLV 795

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H     +          +     +++  ++ +  N+P          F +I        +
Sbjct: 796  HAFAEAVAGGV------DAALAEEKVTSAYMQLANVPSWSRESTEIAFRRILSRTDTWLK 849

Query: 873  KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
              ++   ++   +   + I+   + + G  DR++  KSG + + D+KTG           
Sbjct: 850  TSRADFTEVGTEMDVSVTIDD-SVSIRGRMDRLERNKSGELVVVDFKTGKTQIAAK-DMG 907

Query: 933  IDPQLSLEAAALKAGSF---------SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
              PQL     AL  G                  V     +          +    +    
Sbjct: 908  DHPQLFAYQLALSKGVLHGDKISDPNPGETPDPVGGGLLVY--PATDTKAVGQRMQDPKT 965

Query: 984  DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
             E  +     L  +   L+      ++ +  +  + 
Sbjct: 966  QEDLDDFAAMLPGLAEHLRGPNL--LARVNPTCSTC 999


>gi|82701855|ref|YP_411421.1| hypothetical protein Nmul_A0722 [Nitrosospira multiformis ATCC 25196]
 gi|82409920|gb|ABB74029.1| DNA helicase/exodeoxyribonuclease V, subunit B [Nitrosospira
            multiformis ATCC 25196]
          Length = 930

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 139/943 (14%), Positives = 270/943 (28%), Gaps = 107/943 (11%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             LA  L    D I+               +    W  A   +   S +      +   S+
Sbjct: 35   RLAITLRREFDRIQ-------------AAQGISAWAAA--DILPVSAFIERIYEDALYST 79

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
               +   L+ +  E  +         A    S+  +ARL        +   +LP     +
Sbjct: 80   HASHLPQLLTSAQEQFLWEEVVVQSAAPLLLSVAESARLAREAWRLAHEWQLLPRFGKFV 139

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL-----GNVSNEMY 321
                    +  S    +            L  L+  L               G  S    
Sbjct: 140  LNEDCRAFSAWSHRYKNVTRKARQIDHARLCTLVTGLCGSPGIAIPQRLICYGFDSVTPQ 199

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
              +++        +  +M  TD   ++          V  +E D   +E    A+  R  
Sbjct: 200  WAALLAKLEEAGCEVDEMTRTDPAAHRFEVPYSPNRTVHRVECDVSNDEIYQAAVWARAR 259

Query: 382  LDEN--------------KKKSALITADRNLARRVKLELT--RFGINIDISAGIPLSTTL 425
            ++++               + S +      +   V+  L      +  +IS G+ LS+  
Sbjct: 260  IEKDSTARVGIVVPPLSEYRSSLVRIFSSVMDPDVRQALPGVPRHMPFNISLGVALSSYP 319

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                   +L  I    +F   + L++ P       E                        
Sbjct: 320  LVHTAFLVLELIQGEIEFERASLLLRSPFLAGAETEMLPRAR------------------ 361

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              L + +  R         +     R   E+     LLV  +  C        T+     
Sbjct: 362  --LDAKLRKRAEPVITLERLLVLVKR---ENNANCPLLVKLLWDCEKFCKKMSTDVQR-- 414

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
                 S   +     LQ V     R   +  ++   K    L    +     I  +  + 
Sbjct: 415  ----PSTLARAISDILQLVGFPGERAPDSSEYQTLKKWQDVLAGLALLDNVTIGMSYRQA 470

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            I  +  +      +P+      + ILG  E+  + FD L + GL++  WP     NPFL 
Sbjct: 471  ISHLRGVAADTLFQPETPDVP-IQILGVFEAGGMMFDHLWVMGLSDEAWPLQPRPNPFLP 529

Query: 666  RVMQSDLNLK---TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI---PTIASRWLQRL 719
              +Q    L     A      +         ++ +I + +    +        S  +  +
Sbjct: 530  IELQRAERLPLGSPAATLELASRFTEGWLAASKEVILSHARHSGSSDTRELAPSPLIAHI 589

Query: 720  LVLGGTD-FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                           + +  +   R+L+    +P                    + IK  
Sbjct: 590  ATSDIRLFGLLPDYVKHRDLIHQGRRLERIKDEP--APGIVSGKGGEGRARGGVAVIKDQ 647

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL--MK 836
               P+   A   L  + +       D  +RGTL H ++ ++ ++  NK+  +      ++
Sbjct: 648  AACPFRALALHRLHAEGLKTPHPGLDAGERGTLVHEMLAQVWERIKNKSALDALAEDELR 707

Query: 837  QIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
             ++ S   +            L   +  + +    +++  +LE E K       +     
Sbjct: 708  TLLTSAAGEVIARMSARHSHTLSERLARVEQRRLVRLAREWLEEERKR-GDFTVVSTEAR 766

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA--QKLIDPQLSLEAA-A 943
              + I   G+ L    DR+D L  G   + DYKT   P       ++  +PQL L    A
Sbjct: 767  KSIEI--GGLALDTRLDRVDELADGRRIVIDYKT-RAPSVNAMLGERPDEPQLPLYLVAA 823

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND-------KKKYSADELSEKSLKNLIE 996
                +       +   + Y  L +   +              +  S + L     + L+ 
Sbjct: 824  EVNAAAIAFAQVRAGEMRYTALARDNDLLPDVKGFAQSRHIDRYDSWEALVAAWFEALVS 883

Query: 997  IVTLLQNGEQPFISHLRLSEKS--NIQSEYDHLARVAEWREEY 1037
            +VT   NG     S +   +        +   L R+ E     
Sbjct: 884  VVTDFSNG----HSQVDPKKYPQTCRTCDVQPLCRIYERAATD 922


>gi|311739798|ref|ZP_07713632.1| superfamily I DNA and RNA helicase [Corynebacterium pseudogenitalium
            ATCC 33035]
 gi|311304871|gb|EFQ80940.1| superfamily I DNA and RNA helicase [Corynebacterium pseudogenitalium
            ATCC 33035]
          Length = 1059

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 115/1041 (11%), Positives = 271/1041 (26%), Gaps = 167/1041 (16%)

Query: 46   SVTIYVPTKRAIQELRSEFIEIT--GKKSTILPIIKSLGDVVE------------EKFTA 91
             V     T++A Q+L           + S ++P     G+V E            + +  
Sbjct: 67   QVLGLTFTRKAAQQLEQRIRRQLIKLRDSGLIP---PGGEVAEALENIAPKVATYDSYAG 123

Query: 92   DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
            +L+  Y L  PV    R++  A    +  + + +    L  +  L+        +  +++
Sbjct: 124  ELVREYGLLVPVEPTARIITEAERYSLAYDVVRNYTGQLEDDRALATITET--LLKFSQD 181

Query: 152  LADIIDI---IETEEKKW-EDLHALKNEK--YGMWWLLAADFLK---------IASKYWT 196
            + + +     I    + +  D+  L   +     +      +++            +   
Sbjct: 182  IDNGLKDTSHIAEHARDFRADIDNLDKSQKNGPEYSKALLGYIQTQERRVQYVPLLEALK 241

Query: 197  ERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
            +   E    +         R   +H             +++     +  A   L+ ++  
Sbjct: 242  KEQSERQVITFGEQMAVAARVARDHPVVGKQQSQRYKVVMLDEYQDTSYAQRVLLRSLFG 301

Query: 252  HPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                   V    D       W   T ++      +   +        +L           
Sbjct: 302  GDQEDLSVTAVGDPMQAIYGWRGATSENLTAFVEDFPVAPGTSAPKDQLTTSWRNP---- 357

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                         S  +  +    +         ++       K   ++ L   ++E  E
Sbjct: 358  -------------SGALDLANSVAEGVFEGVERPVDELSAAPHKGEGEIQLAYFESEVRE 404

Query: 371  AISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
               +A  L+   ++ +     +A++      +  +   L + G+  +I     L      
Sbjct: 405  REFVAEYLKEQWEKREGDTFSAAVLVRKNRHSAPIAAALDKAGVPNEIIGLGGLLWQPEI 464

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
              L ++   + +  D  A   L+  P+   G  +     ++      A          MD
Sbjct: 465  QDLVAIATMLVRPEDLPAAVRLLAGPICGLGISDIQALASRQRNLAGAREERLRWEPGMD 524

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
             +  +  ++                     +    L +        L   +         
Sbjct: 525  PEDYLRAQLEDVTAEEPDQRV------GLADALADLGERDRYTPQGLARMEEVSAKLRHL 578

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA-NAIEWI 606
             + S    L         L   R          G T    F+ I+           +++ 
Sbjct: 579  RTYSLSKPLVDIFADIEALFNIRTEVLARGSAGGATHLDKFADIVAGFHGDSLYALLDYF 638

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI--------------------- 645
             +     DG  +      +  + I+   +++ L ++ +                      
Sbjct: 639  ALALEKEDGLDLGEVPAATDRVQIMTAHKAKGLEWEHVCVVHADSSSYSAKAETFLSRID 698

Query: 646  -LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---- 700
             + G ++ +     A+     +    +     +     ++A  F +A        T    
Sbjct: 699  KVPGDDDYIEVPEDAQKRSHFQNACEEFKKADSAIKAEESARLFYVALTRTESTLTVTGS 758

Query: 701  -RSLRENNIPTIASRWLQRL---------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
              +            +L+RL               +  ++       +       +    
Sbjct: 759  GTNNLNGKNKKAPYEYLERLKEQFPQYVVEWSVPDEPSEDDFGESAQFPALQASPEAVAG 818

Query: 751  QPHYKRPKPFPPLEAQ------------------------------PRTYSFSEIKQLIN 780
                       P  ++                              P   + S++  L  
Sbjct: 819  ADLVLEAMEELPDLSRGETFELWEQEAGALIEEYKALQQPVVDVELPSELTASDMVALRA 878

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
            DP    ARR  +               RGT FH  + +           E+         
Sbjct: 879  DPLQF-ARRQRRPVPFKPNSY----AKRGTAFHAWLEDRFGSPALLGEEEL--------- 924

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
                     P ID        ++  +FL  E    +  +   V  P ++ I      + G
Sbjct: 925  ---------PGIDEPEDFDLEELKEAFLNSEW---AERQPEHVEAPFEITIGES--VVRG 970

Query: 901  FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
              D +  L+ G   + D+KTG  P+ E        QL++ A A +      I   +    
Sbjct: 971  RMDAVFRLEDGTWMVVDWKTGRPPQGEAMDAAKI-QLAVYAEAWRR-----IHGGEKIRA 1024

Query: 961  FYIRLKQKFKIDCITNDKKKY 981
             +  +   +  +     + + 
Sbjct: 1025 AFYYVHDGYTFEPARLPRGEE 1045


>gi|116747927|ref|YP_844614.1| ATP-dependent nuclease subunit B-like [Syntrophobacter fumaroxidans
            MPOB]
 gi|116696991|gb|ABK16179.1| ATP-dependent nuclease subunit B-like [Syntrophobacter fumaroxidans
            MPOB]
          Length = 908

 Score =  188 bits (477), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 120/812 (14%), Positives = 230/812 (28%), Gaps = 83/812 (10%)

Query: 258  VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
            +  G+D          +  +                +  A L + L      +    +  
Sbjct: 113  LRYGIDPGEGDPANRLVEWRRGVWKEYRDALRALLLFHPASLPERLG---SFLSLNPDAV 169

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
                  +      +                 +P  Q      A++ AD E+E    +   
Sbjct: 170  PSKTVIAGFEFAGYWEKKLFSRLADTHGALALPLPQVKAKPRAVVYADREQEVFGLLGDL 229

Query: 378  LRMSLDENKKKSALITADRNLARRVK---------LELTRFGINIDISAGIPLSTTLHSS 428
            +R + +    + A++  DR     +           +L       ++ AG  L++     
Sbjct: 230  IRGAGEGRLHELAVVLLDRGTYAPILSQHLKDLLGAQLEGENAAYNLLAGDVLTSQSLWR 289

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
                 L+          + +L++ P   +                   R  +       L
Sbjct: 290  AALLPLDFCLGGESGTQLFSLLRSPYYGYFGARGRALA-------QWDRVWREQGIEKGL 342

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
             +L+      +           R   E  E    L D                    G  
Sbjct: 343  TALLGSLGGRE-------DVLPRRGAELTEGLGALTDR-------------------GTR 376

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            + S+W+    +  + +   E   + N       + L+ L              A E+   
Sbjct: 377  AASEWSAGLRSFWKQM---EFPVIANERDRIAWQRLTGLLDGFDAELGDSSMRAAEFAAW 433

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            +T   +   V+P   + + + ++G LE R L F  L + G   GV P+     PFLS   
Sbjct: 434  LTAAGEKAPVQPSGFEDAGIQVIGELELRGLAFKRLFVPGFLSGVIPQPARSLPFLSVRE 493

Query: 669  QSDLNLKTAEKYIGQAAHDFEMA-NGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTD 726
            +  +   TAE     AAH F       R  + +R L  E   P + S +           
Sbjct: 494  RRLVLGGTAESQFEFAAHLFGQVQAAARETVVSRPLLGEGGEPCLPSPFWPASEETMAPV 553

Query: 727  FFDNLKKRGQCYLDW--------TRKLDYTTKQPHYKRPKPFPPLEAQPRTY------SF 772
                          W           ++               P   +          S 
Sbjct: 554  IPWRHDLPVMQRARWVRDGIEGIAAAMERKEPAGKTHAGGESAPDLYRAERLRFPSEVSV 613

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPE 830
            SE++ L+      + R IL L+ +P   +  D   RG   H ++    ++          
Sbjct: 614  SELELLLACAGRFFLRVILGLEALPVPTRGLDAAVRGRKIHALLAGFGRRLRGIPGGHER 673

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHK----------ISHSFLEHEEKIQS-SIE 879
                + +++D    K+         WR    +          +   +L  E         
Sbjct: 674  EPEALCRLLDEMVRKDIEEQARVAHWRVELARLLGGAEGAPGLLKEWLALECSRFGEGWR 733

Query: 880  KIFVNIPAK-MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA-QKLIDPQL 937
                      + +    + + G  DR+DL         DYKTG  P  +   +    PQL
Sbjct: 734  WTAFEPSFDNLKLRDCPVGIKGRLDRLDLHSELGCICWDYKTGAAPGMKEVLEDFKAPQL 793

Query: 938  SLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
             +   A++ G    I  R+V     YI L+   K++           +    +    L E
Sbjct: 794  PVYLLAVRKGLVPAIGDRRVTLAAGYIALQSVRKLNHCLVIGADERMESFLSQWESVLAE 853

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                +    +  ++ L + +    + +Y+ L 
Sbjct: 854  ---KIDAARRGQLAPLWVLQPCEERCDYECLC 882


>gi|307571853|emb|CAR85032.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes L99]
          Length = 1163

 Score =  188 bits (477), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 122/967 (12%), Positives = 278/967 (28%), Gaps = 128/967 (13%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L  +  L +     +       LA++   ++ EE   ED+                  
Sbjct: 103  AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIEDMVQ-SATNLSTSVNNKVHD 161

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + +  + + E L +    +   Y   L    A+         I+I G T        ++ 
Sbjct: 162  ISLIYQKYEELLADKFLENE-DYLRLLAEKIADSDYLNR-TEIVIDGFTSFSKQELTVIG 219

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   V   L+      I + + E S    S+         Y+L +L      + 
Sbjct: 220  ELMRKCDKVTVSLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 270

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K               ++ ++        +N                ++ + +A+N 
Sbjct: 271  EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 317

Query: 368  REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   IA  +R  +      +  A++T +  +     +  +  + I   I     ++  
Sbjct: 318  RAEIEGIAREIRQLVLNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 377

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         +  L  R  + LE   L     + 
Sbjct: 378  PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 437

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKN 542
               + +   + R     +   +P     +  +       +   I+  +  L    +  K 
Sbjct: 438  WKWEKEGDWVYRKIRGLSTNVLPQTDEEIHMQSI--INEMRSLIVNPLATLELNLRKAKT 495

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLP-----NLWFEEEGKTLSSLFSKIIETGSC 597
                 L++  + +      +     +  +           E+   ++S+L  + +E    
Sbjct: 496  GMEFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGE 555

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
               +   + +II   +D             + +     ++LL+   +   G+N+GV P  
Sbjct: 556  ETLDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLR 615

Query: 658  TAKNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI- 708
                   S   +  L         +A+  IG+            +  L  +    +    
Sbjct: 616  QKDKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGK 675

Query: 709  ----------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD------ 746
                                S +L    +L   +    ++ +       T +L       
Sbjct: 676  VLSESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGY 735

Query: 747  --YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIK 776
               +     Y                             +      L  +    S S ++
Sbjct: 736  TLSSVWWDAYNSYFENEKESIMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRME 795

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP------- 829
            +  +  +  YA+  LKL+   HF+      D G +FH  +  +  +    N         
Sbjct: 796  KFFSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLTEE 853

Query: 830  ---EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFV 883
               ++  L    +    + E L         ++   +I      + +E+   S+   + +
Sbjct: 854  ECKQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGL 913

Query: 884  NIPAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETA 929
             +   +  +   +           L G  DRID+ +      + I DYK+  +       
Sbjct: 914  EVDFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEV 973

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
               +  Q+      +   +   I    + A + Y  +  ++         +  + +    
Sbjct: 974  YYGLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKS 1033

Query: 989  KSLKNLI 995
              +K LI
Sbjct: 1034 SKMKGLI 1040


>gi|217963571|ref|YP_002349249.1| ATP-dependent nuclease subunit B [Listeria monocytogenes HCC23]
 gi|251764606|sp|B8DF43|ADDB_LISMH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|217332841|gb|ACK38635.1| ATP-dependent nuclease subunit B [Listeria monocytogenes HCC23]
          Length = 1157

 Score =  188 bits (477), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 122/967 (12%), Positives = 278/967 (28%), Gaps = 128/967 (13%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L  +  L +     +       LA++   ++ EE   ED+                  
Sbjct: 97   AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIEDMVQ-SATNLSTSVNNKVHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + +  + + E L +    +   Y   L    A+         I+I G T        ++ 
Sbjct: 156  ISLIYQKYEELLADKFLENE-DYLRLLAEKIADSDYLNR-TEIVIDGFTSFSKQELTVIG 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   V   L+      I + + E S    S+         Y+L +L      + 
Sbjct: 214  ELMRKCDKVTVSLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K               ++ ++        +N                ++ + +A+N 
Sbjct: 265  EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311

Query: 368  REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   IA  +R  +      +  A++T +  +     +  +  + I   I     ++  
Sbjct: 312  RAEIEGIAREIRQLVLNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         +  L  R  + LE   L     + 
Sbjct: 372  PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKN 542
               + +   + R     +   +P     +  +       +   I+  +  L    +  K 
Sbjct: 432  WKWEKEGDWVYRKIRGLSTNVLPQTDEEIHMQSI--INEMRSLIVNPLATLELNLRKAKT 489

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLP-----NLWFEEEGKTLSSLFSKIIETGSC 597
                 L++  + +      +     +  +           E+   ++S+L  + +E    
Sbjct: 490  GMEFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGE 549

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
               +   + +II   +D             + +     ++LL+   +   G+N+GV P  
Sbjct: 550  ETLDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLR 609

Query: 658  TAKNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI- 708
                   S   +  L         +A+  IG+            +  L  +    +    
Sbjct: 610  QKDKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGK 669

Query: 709  ----------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD------ 746
                                S +L    +L   +    ++ +       T +L       
Sbjct: 670  VLSESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGY 729

Query: 747  --YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIK 776
               +     Y                             +      L  +    S S ++
Sbjct: 730  TLSSVWWDAYNSYFENEKESIMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRME 789

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP------- 829
            +  +  +  YA+  LKL+   HF+      D G +FH  +  +  +    N         
Sbjct: 790  KFFSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLTEE 847

Query: 830  ---EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFV 883
               ++  L    +    + E L         ++   +I      + +E+   S+   + +
Sbjct: 848  ECKQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGL 907

Query: 884  NIPAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETA 929
             +   +  +   +           L G  DRID+ +      + I DYK+  +       
Sbjct: 908  EVDFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEV 967

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
               +  Q+      +   +   I    + A + Y  +  ++         +  + +    
Sbjct: 968  YYGLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKS 1027

Query: 989  KSLKNLI 995
              +K LI
Sbjct: 1028 SKMKGLI 1034


>gi|251764595|sp|A4IKW6|ADDB_GEOTN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
          Length = 1167

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 120/957 (12%), Positives = 248/957 (25%), Gaps = 125/957 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA----LKNEKYGMWWLLAADFLKIA 191
            L L    A+     + L ++I   +      ++L      L++        L AD L   
Sbjct: 107  LKLFGRAADKSGFVEQLHEMIAECKRYCLTPDELRRHAGVLESGSGQPGRRLLADKLSDV 166

Query: 192  SKYWTERLVEL-NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
            +  + E    L          + L+              I I G     P    ++  + 
Sbjct: 167  ALVYEELERSLLGHYLDSEDYLRLLVEHIPRSSYLHGADIYIDGFHHFSPQEYMVIEQLL 226

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
            +      V    D      + + +                +      + L  L +  + +
Sbjct: 227  HRCRRVTVCLTADRPYDVGMPDELDLF-------------YLPAQTYRQLRELALANDIM 273

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                 V +                              +   +     + L EA N R E
Sbjct: 274  IESPVVLSVNRR---------HQDKALAHLEEQFHRRPLLPYEAETDAICLYEAANRRAE 324

Query: 371  AISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLH 426
              ++A  +   + +     +  ALI       R  VK     F I   +    P+     
Sbjct: 325  IEAVAREIIRLVRDEGARYRDIALIIRQTEAYRDLVKTVFFDFDIPYFMDEKEPMHYHPL 384

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDI 485
              ++ + L  +     + A+   VK  L      +      A + LE   L         
Sbjct: 385  IELVRAALETVVTRWRYEAVFRAVKTDLLFPVDGDLAMWREAADKLENYVLAHGVKGEKW 444

Query: 486  MDLKSLVLDR-IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
               +     R  A    N      + +  ++  E    L   + +    L      +   
Sbjct: 445  TSDERWTYRRYQALDGLNVPQTDEERQFEDKLNEWREALAAPLRRLERRLRRAADGRGLC 504

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKL--PNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                   +  ++     Q     E           E+    +  L  + +E         
Sbjct: 505  TALYLFLEELQIPKKLEQMSAQAEADGRLVEARQHEQAWNAVVDLLDQYVEMLGAEPLPL 564

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             E+  II   +D             + +     SRL++     + G+N+GV P       
Sbjct: 565  AEFAKIIEAGLDRLEFALVPPAIDQVIVAQLDRSRLIDVKYAFIIGVNDGVIPAKVKDEG 624

Query: 663  FLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLREN-NIPTIAS 713
             ++ V +  L            + +        +A    +R L  T  L +      + S
Sbjct: 625  LVAEVEREQLRELGVALAPGGREQLFYDPFFVYLALACPSRRLYVTYPLADGEGKALMPS 684

Query: 714  RWLQRL----------------------------------------------LVLGGTDF 727
              +++L                                                 G    
Sbjct: 685  PLIKQLVQLFPRVSVHLCGNDPFDAPEEKPETFVTVPRATQTYLISQLRAWKRNYGIDPL 744

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP-----RTYSFSEIKQLINDP 782
            + ++      + +W  +++       Y          ++         S S ++Q    P
Sbjct: 745  WWDVYNVLISHPEWRARVEQAVSGLFYTNQAVLKREWSRRLYGKKIQASVSRMEQFQKCP 804

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE----------IN 832
            YA +A   L+L     F+   +  D G LFH  I ++  +   ++             ++
Sbjct: 805  YAHFASHGLRLKERNVFR--LEAPDVGQLFHAAIKQIADRVREQHLDWKQLSRSECERLS 862

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHL-FHKISHSF--LEHEEKIQSSIEKIFVNIPA-- 887
                + I    +++ L       +       +      +  E    S    +   +    
Sbjct: 863  AEAVERIAPLIQQQVLSSSNRYEYMKRKLKNVVARTTHVLSEHARASGFAPVGFELSFGP 922

Query: 888  KMAIESIGIHLT--------GFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDP 935
               +  +   L         G  DR+D  +S     + I DYK+             +  
Sbjct: 923  GGDLPPLRFQLRDGTVMELVGRIDRVDKAESSQGVLLRIIDYKSSAKTLDLTEVYYGLAL 982

Query: 936  QLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
            Q+      +   +   +      A + Y  +           D +   A +L E   
Sbjct: 983  QMFTYLDIVLTYAEQLVGEPALPAGVLYFHIHNPIIQAKQWLDNEMEVARKLLEPFR 1039


>gi|223936290|ref|ZP_03628203.1| ATP-dependentnuclease subunitB [bacterium Ellin514]
 gi|223895152|gb|EEF61600.1| ATP-dependentnuclease subunitB [bacterium Ellin514]
          Length = 1129

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 113/975 (11%), Positives = 250/975 (25%), Gaps = 131/975 (13%)

Query: 84  VVEEKFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
           +  E+    +  S    PP  +    RL+ L  L+   R++L              L  +
Sbjct: 66  LSFERLAFFVFNSLQKPPPQMLDEEGRLMVLRSLLARKRDEL-------------KLFRA 112

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG-MWWLLAADFLKIASKYWTERLV 200
            A     A++L+ ++  ++  +   E LH L  + +           L    + + + L 
Sbjct: 113 SARLAGFAQHLSRVLRELQHHQLTPESLHELAEQVHAVEGLSYKLHDLGTMLRDYLDWLQ 172

Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
             +                E       G + + G T   P    L++ +  H   A +  
Sbjct: 173 AHHLQDGDNLLTFATEVLREPHAPLNFGEMWVDGFTDLSPQELDLLAQIIPHVPQATLTF 232

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
            LD      I         +  S         Q   A       +   ++ +     +  
Sbjct: 233 CLDQVPTERI------SWLSNWSVPRRTYDRCQKRFA------GLPNVELSKELLARHMN 280

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
             R +  S               +              + +I   N   EA   A  +  
Sbjct: 281 RSRFLNNSPLHHLEQHWAEPKPFVDAATAARPYSLRESLRVITCTNPEAEATLAAREVLR 340

Query: 381 SLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
            +    +    + L+    N    +     R+ I   +     +S    + +  + L  +
Sbjct: 341 FVRSGGRFREVTILVRKLDNYHEALANTFKRYDIPYFLDRREAVSHHPLAELTRNALRTV 400

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                       +K  L      E      +           ++   I D   L      
Sbjct: 401 AFSWSRDDWFAALKTGLVPAEDTEIDRLENEALARGWKGSTWQHPILIHDNPELTEWAEN 460

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
            ++         +    +                    + +    +           +  
Sbjct: 461 LRRKIVPPFKNLAVNMGQQSNRP---------------SGRHLAAALRDFWQSLKVDETL 505

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                        +L         + +++    +            EW+ I+   +    
Sbjct: 506 QEWSDAEIAGSDSQLAPPIHLTVWEQMNAWLENVELAFPTETLPLREWLPILEAGLANLN 565

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----- 672
           V         + I     SR  +    ++ G+NEGV+P    ++  L+   + +L     
Sbjct: 566 VGVIPPALDQVLIGAIDRSRNPDIRLALVLGMNEGVFPAPPEQSVLLTDADREELKKKDV 625

Query: 673 --NLKTAEKYIGQAAHDFEMANGTRHLIYTRSL--RENNIPTIASRWLQRLLVLGGTDFF 728
                T ++   +  + +      R  +   S        P   S +L +L  L  +   
Sbjct: 626 ELGASTRQQIGHERYYGYVACTRARQRVVLTSAIFDAAGKPLNPSPFLSQLKQLFPSLET 685

Query: 729 DNLK---------------------------------KRGQCYLDWTRKLDY-----TTK 750
           +                                         +       +      TT 
Sbjct: 686 ETFPKSLDWRKSEHANELIVPLLRNQVQSPISKVQGVSALNKFPALAALRERLKHFSTTP 745

Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                 P+    L       S S ++Q    P+  +    L+ +    F+   D  D+G 
Sbjct: 746 TEESLSPELAERLYGPALRTSVSRMEQFAACPFKFFVHSGLRAEERKKFE--LDIRDQGN 803

Query: 811 LFHNIITELI-------KKRINKNTPEINHLMKQII--------DSHFEKENLPPHIDII 855
             H ++           K+  + +  E    +K I         D   +          +
Sbjct: 804 FQHEVLASFHEQLKTENKRWRDISPQEARERIKSIALTMMVSYRDGLLQVSEETRFTARV 863

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--------KMAIE-SIGIHLTGFADRID 906
                     + +    +  +  +   V +P         ++ +     + L G  DRID
Sbjct: 864 LTESLQDFVETLVGWMGQQYA-FDPKAVELPFGEDLFPAWELELGKDHKLLLHGRIDRID 922

Query: 907 -----LLKSGFV-DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFS----QIDCR 955
                      +  + DYK+          +  +  QL+     L+          +   
Sbjct: 923 ICRESEDAEEALCVVVDYKSSQKQLDPLLMEHGLQLQLAAYLNVLRHWPDPRPIFGVQRL 982

Query: 956 KVANLFYIRLKQKFK 970
             + +FY+ L+ ++ 
Sbjct: 983 IPSGVFYVNLRGRYD 997


>gi|333030117|ref|ZP_08458178.1| hypothetical protein Bcop_0989 [Bacteroides coprosuis DSM 18011]
 gi|332740714|gb|EGJ71196.1| hypothetical protein Bcop_0989 [Bacteroides coprosuis DSM 18011]
          Length = 955

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 161/482 (33%), Gaps = 56/482 (11%)

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                +         +I +++    +    E +  + ++G LE+R L+F  L++  +NEG 
Sbjct: 481  DSGELPIKISTLKHLIDKVLSSANIPFHGEPAIGMQVMGVLETRNLDFKNLVMLSVNEGQ 540

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTI 711
             PK+ +++ F+   ++    + T E      A+ F        ++    +   +      
Sbjct: 541  LPKSVSESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLIYNTASDGLNKGE 600

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP---HYKRPKPFPPLEAQPR 768
             SR++ +LLV           + G             T +      +R     P   +  
Sbjct: 601  ISRFMLQLLVEWPHSIERKHIEAGHALTTTPDIQFDKTPEVFQKLKERYDISLPNHEKAI 660

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-- 826
              S S +   ++     Y R I  L        + D    G++FH     + K   ++  
Sbjct: 661  -LSPSALNTYLDCKLKFYYRYIAGLKAPNEVSDEIDAALFGSIFHRAAETIYKDLADRQG 719

Query: 827  --------NTPEINHLMKQIIDSHFEK------ENLPPHIDIIWR---HLFHKISHSFLE 869
                       +I   +++ ID+ F+K      E   P  + I      +        L+
Sbjct: 720  WIKKEDIQALLKIKPRIQEHIDNAFKKLFFKIDETQKPEYNGIQLVNSRVICSYIEQLLK 779

Query: 870  HEEKIQSSIEKIF----VNIPAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKT-GD 922
            H+ +  +  + +     V     ++  S    I + G  DR+D LK G + I DYKT G 
Sbjct: 780  HDLE-YAPFQIVGMEKTVEEQMTVSTPSGQYSIKIGGNIDRLD-LKEGILRIVDYKTGGT 837

Query: 923  NPKKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
                +   +L +P         Q  L A+ +      Q+      +L YI          
Sbjct: 838  AKTPQDISQLFEPAIDRPNYVFQTFLYASIVSNKVKYQVAP----SLLYIHRAAAEDYSP 893

Query: 974  ITNDKKKY-------SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026
            +    +         +   + ++      E++  L   +  F        ++    ++  
Sbjct: 894  VIQMGQPRKEKIAITNFKMVEDEFKNKRQELIKDLFERDICFTQTEFP--ETCQYCDFKG 951

Query: 1027 LA 1028
            L 
Sbjct: 952  LC 953



 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/440 (11%), Positives = 112/440 (25%), Gaps = 78/440 (17%)

Query: 44  LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           L+ V I  P KRA           +  +    P   S+ ++++      +     L    
Sbjct: 20  LSRVAIVFPNKRASLFFNEYLALESQ-QPIWSPSYHSISELLQSLSDIQIGDDIKL---- 74

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                +  L  +                         +  +  +  + L    D I+   
Sbjct: 75  -----ISLLYNVFEKHTE----------------SKETLDDFYFWGELLLSDFDDIDKNR 113

Query: 164 KKWE-------DLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
              E       DL  L    ++      AA       +++    +E         +  L 
Sbjct: 114 VDAENLFTNLKDLKDLVDTYEFLDEEQEAA-----IQQFFDNFSLEK--------RTILK 160

Query: 216 RAEAEHLMKGTKGPIIIAG--STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
                   K                I     L             L   D      ++  
Sbjct: 161 DRFISLWDKLGNIYTSFKEELFKEKIAYEGMLYRHNIEQ------LDTNDLQYDHYVFVG 214

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
               +   +          +              +             G  +  +    P
Sbjct: 215 FNVLNKVESLFFEKLRDADRALFYW-------DYDQFYTSYKGFTHEAGVFINRNLDLFP 267

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393
              S     ++ +            +  I +  E  +A  +   +  +L E +K +A++ 
Sbjct: 268 NQLSPECFNELNKP---------KKITYISSSTETAQARFLPQWIENNLGEKEKVTAVVL 318

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL-------NDFMAI 446
            +  L   V   +     N++I+ G PL+ T   S++ +L+    +         ++ +I
Sbjct: 319 CNEALLLPVLHSIPSKVQNLNITMGFPLAQTPICSLIKALMELQNQGYNAKQGYYNYQSI 378

Query: 447 ATLVKHPLAKFGFPEKYLSR 466
             ++KHP  +          
Sbjct: 379 LAVLKHPYTRQLSTTAKDLE 398


>gi|255282637|ref|ZP_05347192.1| ATP-dependent nuclease subunit B [Bryantella formatexigens DSM 14469]
 gi|255266930|gb|EET60135.1| ATP-dependent nuclease subunit B [Bryantella formatexigens DSM 14469]
          Length = 1162

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 125/1053 (11%), Positives = 283/1053 (26%), Gaps = 152/1053 (14%)

Query: 48   TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
             + VP +  +Q  R   + +      +   I S   +    F         +   +  + 
Sbjct: 35   LVIVPEQFTMQTQRE-LVRLHPDGGLLNIDILSFQRLAHRIFEEVGADKRTV---LEELG 90

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
            + L L R     +++L  +  +L     L    S              I  +   +   E
Sbjct: 91   KTLLLRRAASRVQDELKVLKGNLKKMGYLQQMKSM-------------ISELTQYDIDSE 137

Query: 168  DLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
             +  L +  +           +++  + + E L            +  +   A       
Sbjct: 138  KMERLLQQAEQKPSLFYKLKDIRLLYESFQEELE--GKYITAEETLEALCQVARQSAILK 195

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
               + I G TG  P   +L+  + +      V   +             E       +  
Sbjct: 196  GCVVAIDGFTGFTPVQNKLLRELFSLAEQVYVTVTIRAQEEFYRIRGEHELFYLSKKTIR 255

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN-----------EMYGRSMVISKSFLPPD 335
            + +   Q +  ++L  + ++ + + R                      +    +     +
Sbjct: 256  SLAHTAQEAGCEILPPVVMEWKTLPRFTKSPELGFLEAYLFGGGKAQWTEPAEEPVRSAN 315

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---SALI 392
                  T       P        ++L  A N  +EA   A  +R  L +  +    + ++
Sbjct: 316  PHTAEETARSGEAEPECASSGCAISLHTAANPVQEAHFAARTIRALLRQGYRYQDIAVIV 375

Query: 393  TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                + +  +      + I   + +   + +      L ++L+ I +     ++   ++ 
Sbjct: 376  GDLPSYSSYIPQVFGEYKIAYFMDSTRTVFSNPLVEFLRAVLDMIQQDFTCASVFRYLRT 435

Query: 453  PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
             L +    +  +                          L        +           L
Sbjct: 436  GLCRIDAQKLDMLENYV---------------------LAAGVRGFSRWREPFTRAVDFL 474

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNST-----CGNLSISDWTKLTVTCLQNVCLD 567
             EE   L   L   I++ + PLV+      +T      G  ++     +           
Sbjct: 475  DEEQLALCEELRSLIMEPLLPLVSCMRQARTTAREKTEGLHTLLCHYNIQQQLADMEKQF 534

Query: 568  EHRKLPNLWFEEEG--KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                   L  E  G    +  +F K+ E          E+ +++    +   V+     +
Sbjct: 535  RADGQAELEKEFAGIYAMVIGIFDKLAELLREEALTLQEYTELLEAGFEEARVRLIPPSA 594

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEK 679
              + +     SRL +   LI  GLN+G  P   A    LS + +  L         T  +
Sbjct: 595  DRVQVGDLERSRLTDIKVLIFLGLNDGWVPATGAGGGLLSDMERETLMESRVELAPTTRQ 654

Query: 680  YIGQAAHDFEMANG--TRHLIYTRSLRENNIPTIASRWLQR------------------- 718
                      +        L  + S    +   +   ++ R                   
Sbjct: 655  NSYIQRFYLYLNLTKPRERLYLSCSKATADGSLLRPSYVMRTIGRLFPGLSVHDEDVCES 714

Query: 719  -----------LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                       L  L    +    ++    +L+               +           
Sbjct: 715  FSSRVETPQNALAYLLEGFWSIRERQPSGEWLELYNWYRRKEDTKKQVQRLVEAAFLTFD 774

Query: 768  RTY----------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
             +                 S S +++  +  +A + +  L+L      +      D G +
Sbjct: 775  ESGIGRKAARELYGEVLVNSVSRLEKFASCAFAHFLQYGLRLQERE--EYVFRPVDMGRV 832

Query: 812  FHNIITELIKKRIN---KNTPEINHLMKQIIDSHFEKENL--------PPHIDIIWRHLF 860
            FH+ I    +K              +  + I+    + +             +       
Sbjct: 833  FHSAIELYSRKVEESGYDWFRIPEEVRDRFIEEAVNEVSAAYGQQILHDSARNEAMIGRM 892

Query: 861  HKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGI----------HLTGFADRIDLL 908
             +I     +  H +            +    A E   +           L G  DRID+ 
Sbjct: 893  KRIMRRTVWALHRQIQSGHFYPANFEVSFSQAEELEAVNIALSPEEKMRLQGRIDRIDVC 952

Query: 909  K-SGFVD--ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFY 962
            +    V   + DYK+G+           +  QL +   A           ++   A +FY
Sbjct: 953  EKEEQVYVKVIDYKSGNTSFDLVALYYGLQLQLVVYLNAAMELEKKVHPEKEIVPAGIFY 1012

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              +      D +    ++ + +E+++K L+ L 
Sbjct: 1013 YHM-----QDPLVETDEELTPEEINKKLLRQLR 1040


>gi|167765656|ref|ZP_02437709.1| hypothetical protein CLOSS21_00144 [Clostridium sp. SS2/1]
 gi|167712631|gb|EDS23210.1| hypothetical protein CLOSS21_00144 [Clostridium sp. SS2/1]
 gi|291559892|emb|CBL38692.1| ATP-dependent nuclease, subunit B [butyrate-producing bacterium
            SSC/2]
          Length = 1126

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 107/921 (11%), Positives = 248/921 (26%), Gaps = 125/921 (13%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
                 L      +   +   EDL  + +           + + +  + + + + E     
Sbjct: 125  GFIDELKSFFAEVYQYDVSMEDLKKITDGMKEEGLRSKMEDILLVMENFEDYIKERYLI- 183

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 + ++  + E   K       + G TG  P   +++  +        V   LD   
Sbjct: 184  -SEQLLDVLAQKVEQSEKLKNATFYLDGFTGFTPIQRKVLEKLLKIGKNVYVGLTLDGRY 242

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR-EDVKRLGNVSNEMYGRSM 325
              + +      + +             Y L KL          D+    +  +    R +
Sbjct: 243  VRSQYREYELFAMSKKEK---------YELIKLAQDAGTPVMPDIICWPDERDSKELRHL 293

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                             +I        +    D+ +    N R+E+ ++A  +   + E 
Sbjct: 294  ---------------EQNIERYPYEIYKDEPEDIKIRCFMNPRQESRTVANEIERFVREE 338

Query: 386  K---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                K   ++TAD +  +           I   +     L        L S+L  I K  
Sbjct: 339  GYRYKDIVVLTADLDSYQNELEKSFDDLHIPYFVDVNRKLLNNPCIETLLSVLKMIQKDF 398

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
             +  +   +K   + F   E            +      N      L S         ++
Sbjct: 399  SYDMVFRYLKSGFSNFTMEEADFLENYVLACGIRGFARWNRPFASKLFS--------DED 450

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                   + R  EE   L   L          L+       +      +    ++     
Sbjct: 451  VGRAEALRIRFIEEVGTLKTGLKRRGSTVKRKLIYLYEFLETLDVEGKMVKKQEMFEASG 510

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
              +            + +  + +  L  ++ E     K +  +++ ++   ++   +   
Sbjct: 511  DLIAAAT--------YAKVYEQVIDLLEQMAEILGEEKLSYDDFLSVLESGLEEMQIGVI 562

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-----LKT 676
                  + I     +R      L   G+NEGV P        ++   +  L      L  
Sbjct: 563  PPSLDQVMIGDMKRTRTEEVKILFFLGINEGVIPAANGGGGVVNDHQREVLETYGINLAP 622

Query: 677  AEKYIGQAAHDFEMANGTR---HLIYTRSLRE-NNIPTIASRWLQRLLVLGG-------- 724
              K        +     ++    L  +  + +        S +++R+  +          
Sbjct: 623  GIKQSAYMEQFYLYLTVSKPTDRLYLSYRMMDAAGNNNRPSYFIERIQRIFPKLKVTMQE 682

Query: 725  ---------TDFFDNL-----------KKRGQCYLDWTRKLDYTTK-------------- 750
                      +  D +           +      + W + L +  K              
Sbjct: 683  EEVQTGYTKEEALDQMILCLQEMEFDERDDDPEKMKWMQTLYHALKELEPVGDYVDARFY 742

Query: 751  --QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
              Q      +    L     + S + +++     ++ + +  L+L        +   TD 
Sbjct: 743  TNQALPLSKELIHDLYGDTISGSVTRMEKFAGCAFSHFMQYGLRLRKR--LVHEILPTDM 800

Query: 809  GTLFHNIITELIKKRINKNTPEINHL------MKQIIDSHFEKENLPPHIDIIWRHLFHK 862
            G +FH  +  + K+   K   + +        ++Q +    ++     H +        +
Sbjct: 801  GKVFHKTMELVGKRSDWKFADDASRDEFVELMVEQAVTDIQKELFESSHRNEYVLERMKR 860

Query: 863  ISHS--FLEHEEKIQSSIEKIFVNIPA-------KMAI---ESIGIHLTGFADRIDLLKS 910
            IS    +   +   +         I          M     +   +  +G  DR+D ++ 
Sbjct: 861  ISKRAVWAMEQHIKRGDFTPEEYEIAFGEENHLDSMTFALEDGEKMFFSGVVDRMDSIED 920

Query: 911  GF---VDITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRL 965
                 + I DYK+G            +  QL +   A ++            A +FY  +
Sbjct: 921  DENKYLKIIDYKSGKQKFDFAKIFHGLQMQLIIYMNAMMELYEKKTGKRVYPAGMFYFHM 980

Query: 966  KQKFKIDCITNDKKKYSADEL 986
                      N+ +     +L
Sbjct: 981  DDPIVNVEHENEAEDKILKDL 1001


>gi|260589314|ref|ZP_05855227.1| ATP-dependent nuclease subunit B [Blautia hansenii DSM 20583]
 gi|260540395|gb|EEX20964.1| ATP-dependent nuclease subunit B [Blautia hansenii DSM 20583]
          Length = 1144

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 138/1005 (13%), Positives = 272/1005 (27%), Gaps = 143/1005 (14%)

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + S   +     T        L   +    + + L R+    + +L  +   +  +  +S
Sbjct: 64   VLSFERLAFRVLTEMGESQRTL---LEETGKSMVLRRVAQEKKKELKILGAKMDKQGYVS 120

Query: 138  LPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWT 196
               S  +              +   E   EDL   L++             +K   + + 
Sbjct: 121  QMKSMVS-------------ELRQYEISTEDLEDVLEDLSSSPELYYKLQDIKTLYQGFF 167

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            + L E +  +        M   A    K     +++ G TG  P   +L+ T+       
Sbjct: 168  DYL-EGSFITQEEVLD-AMGRVAPQSKKLKDSVLVLDGYTGFTPIQLQLLETLLEICEEV 225

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
             V           +                  S     SL ++     I  ++       
Sbjct: 226  YVTVT--------VAAGEDPYKMGSPHELFYLSRQTVASLLRIAKDKKISWKEYW----- 272

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
              E  G      K   P    +         K P  Q     V + EA N   E    A 
Sbjct: 273  IPEGRGEYQGRFKDNPPMAFLEKNVFRYRRKKYPKQQDA---VQIYEAQNPASEMEMTAG 329

Query: 377  ALRMSLDENK---KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
             +R  +       +  A+IT D    A        R+ I   I     +        L +
Sbjct: 330  EIRRLVRTKGYRYRDFAVITGDMQVYAPAAARAFARYEIPCFIDEKHSVFLNPFVEYLRA 389

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
             ++ I +   + +I  +++  L      E                       I       
Sbjct: 390  AVDMIVENFSYESIFRMLRCGLNDISTEEADRLENYVIAM-----------GIRGFSRWQ 438

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
             + + + +     P    ++ +    L         +  TP  + +T   +    ++ + 
Sbjct: 439  QEWVRSYR--GENPEECVQIDKIRASLVEKWEPFYKKMKTPDASVRTYTEALYQYITANK 496

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              +      +N    E        + +  + + +L  K++E     K    E+ +I+   
Sbjct: 497  IQEKLKEFTRNF-EAEGNLSLVKEYSQIYEIVMNLLDKLVEILGDKKVRIREFKEILEAG 555

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            +    V      S  + +     +RL +   +   G+NEG  PK       LS + + +L
Sbjct: 556  LSEAKVGIIPPTSDQVLVGDMERTRLKDIKIVFFVGVNEGKIPKEQQAGKLLSDLNREEL 615

Query: 673  NLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLRENNIPTIASR-WLQRLL 720
                 E+ +  A            + +         IY    R ++     S  +L   +
Sbjct: 616  KGSLKERGLSLAPTAKENLYTQKFYLYLNLTKPSERIYLSYSRLSSSGEAMSPSFLVAQI 675

Query: 721  VLGGTDFFDNLKKRG------QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY---- 770
                 D                     + ++    +               +        
Sbjct: 676  QKLFPDAVREWDVPLFAESKYGALDRLSEEMRKQDRTSPVFEELMSWFTSQKEYGELVNR 735

Query: 771  -----------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                                         S S ++Q      + +    L L      + 
Sbjct: 736  LIDAAYYVNPQESISKGVAEALYGTELSNSASRLEQFAKCACSHFLSYGLMLRER--VRY 793

Query: 802  DPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFEKEN----LPP 850
            +    D GTL HN +    +K   +          E + L +  +    EK      L  
Sbjct: 794  EFSMADMGTLLHNSLDLFARKVREQGKSWVDLEDEERDTLAEDCVTEVVEKSGETILLSS 853

Query: 851  HIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPA-------KMAIE---SIGIHL 898
              +    +   ++     +   ++  Q                    +  +      +HL
Sbjct: 854  ARNAYTINRVKRMVKRSVWALQKQLKQGEFYPALTEWAFGEKDNIDSLNFDLESGQKLHL 913

Query: 899  TGFADRIDLLKSGF----VDITDYKTGDNP-KKETAQKLIDPQLSLE---AAALKAGSFS 950
             G  DRID+ +       V + DYK+G            +  QL+L    A  L+   F 
Sbjct: 914  KGRIDRIDVCQDKENHLYVKVIDYKSGTTQLDLIKLYYGLQIQLALYLNAALELEKKRFP 973

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 + A +FY         D I N +   + +   E+ LK L 
Sbjct: 974  DKF-VQPAGVFYYN-----TKDPILNKEDVKNPENPQEEILKKLK 1012


>gi|315503767|ref|YP_004082654.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315410386|gb|ADU08503.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 1250

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 129/1073 (12%), Positives = 265/1073 (24%), Gaps = 148/1073 (13%)

Query: 30   LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT---GKKSTILPIIKSLGDVVE 86
            LVE         +    + +    +R   ELR          G +    P++++      
Sbjct: 156  LVEAVAARVAEGVDPERILVLTFGRRGATELRHRIEARIAEGGHRVIREPLVRTFPAYAF 215

Query: 87   EKFTADLLLSYNL-NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                             ++  ++ L +  L+ +   +  D      P             
Sbjct: 216  GLLRRAAAERGEPSPRLLTGPEQDLIIRELLDVVGEEPGDD-----PVGWPEDLRPALRT 270

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN-- 203
               A+ L D++           +L  L  +     W  AA FL+        R V     
Sbjct: 271  RAFAQQLRDLLMRAAERGVGPVELARLGEKLGRADWPAAARFLREYVAVLALRDVSNRGS 330

Query: 204  -ASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
             A  P     A      +        +     + +     + PA   L++ VA    G  
Sbjct: 331  VAYDPAELVRAATGMLLDDPELLAAERRRLTHVYVDELADTDPAQLDLLAVVAG--GGRS 388

Query: 258  VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
            ++   D    T  +                 ++    +   L        E    L   +
Sbjct: 389  LVAFADPDSSTYAFRGADPAGVTTFPHRFRTASGAPAAQVTLTTSYRAGPE----LLAAT 444

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
              +  R                          P        V ++   +   E+  +A A
Sbjct: 445  ARLARRLR---------------GPAGHRRLHPLPGVPAGTVEVLTFRSATSESAWLAHA 489

Query: 378  LRMSLDENKKKSALITADRNLARRVKLELTRF-----GINIDISAGIPLSTTLHSSILTS 432
            LR +   +    + +        R    L R         +     +PL      + L  
Sbjct: 490  LREAHLLDGVPWSRMAVLVRSTGRQLPSLRRALHTAGVPTVVHGEDLPLHLQPAVAPLLL 549

Query: 433  LLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            LL    +    D  A   L+  PL           R +  L  +AL           L  
Sbjct: 550  LLRCALEPDRLDEEAAVALLHSPLGG--ADPLAERRLRQGLRALALAAGDRRPSGELLVE 607

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
             + D                 ++                    L        S       
Sbjct: 608  ALRDPAELATIERRWAAPAQAVAHLLATARETAGRPGATVEDVLWAVWR--ESGLAERWA 665

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
               T+      ++      R        +    L    ++  +     +   +    ++ 
Sbjct: 666  GAITRGRAATGEHETAQRWRAEAADRDLDAVLVLFDAAARFTDRLPGAR-TEVFLDHVLG 724

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
            + +  +T+    ++   + +L    ++ L +D + + G+ EGVWP    +   L      
Sbjct: 725  QELPADTLAAAADRGDAVRLLTAHAAKGLEWDLVAVAGVQEGVWPDLRLRGSLLGSERLV 784

Query: 671  DLNLKTAE-------------KYIGQAAHDFEMANGTRHLIY------TRSLRENNIPTI 711
            D+    A+               + +    F +A              + ++  ++    
Sbjct: 785  DVLAGRADGAGLRASLVGQTSALLDEERRLFHVAISRARRRLLVTAVASAAVGGDDHEEQ 844

Query: 712  ASRWLQRLLVL-----------------------------------------------GG 724
             SR+L  L                                                   G
Sbjct: 845  PSRFLHELAAADPPATGGGGTAPTGPAPNGPNPNGPNPTGNGPTRTATRGGIVDGPVPHG 904

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI----- 779
             +   +            R L  +      +     P      R  +  E+ +L      
Sbjct: 905  DEHPQDGPPAALPVTLPPRGLTLSALVAELRTAVTDPATPITRRHAAAGELARLAAAGVP 964

Query: 780  -NDPYAVYARRILKLDFIPHFKKDP---DRTDRGTLFHNIITELIKKRINKNTPEIN--- 832
               P   +  R L  D     + +P     +   +     +  L+++             
Sbjct: 965  GAHPDDWWGLRGLSDDRPLVDEGEPVRVTPSAMESALRCSLRWLLERHGGSGPASAAQGV 1024

Query: 833  ------------------HLMKQIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEK 873
                                + + + + F+  E     +    R     +    L     
Sbjct: 1025 GNLVHAAAMLAEDASVDREALLEYVAARFDAIELAARWMAGPERQRAEAMVDKLLRWLAG 1084

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
                +  I      ++   S  + LTG  DR+++   G + + D KTG +      +   
Sbjct: 1085 NPRRLLAIEHEFAVRLDDPSRPVELTGRVDRLEVDDEGRLVVIDLKTGKSTAVTEREVAE 1144

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
             PQL    AA++AG F++    +      ++L    +              E 
Sbjct: 1145 HPQLGAYQAAVEAGGFAEFG-EEPGGAALVQLGTGARDAKEQTQAAAGEGPEA 1196


>gi|225388059|ref|ZP_03757783.1| hypothetical protein CLOSTASPAR_01793 [Clostridium asparagiforme DSM
            15981]
 gi|225045882|gb|EEG56128.1| hypothetical protein CLOSTASPAR_01793 [Clostridium asparagiforme DSM
            15981]
          Length = 1216

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 130/990 (13%), Positives = 264/990 (26%), Gaps = 169/990 (17%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
                 L   I  +       +DL  L+ E            L +  + + + + +   + 
Sbjct: 125  GFINQLKSQISELCQYGITPQDLELLQGETENPLLKQKLGDLGLIFQEFKDYIADHYIT- 183

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 + ++  E           I + G TG  P   R++           +   LD   
Sbjct: 184  -AEEILDILCRELPRSEMLKNSVIFLDGYTGFTPVQYRIVE--------LFITHALDVVC 234

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               +         +   +    S H    LA +     ++ ++   L         R   
Sbjct: 235  AVTVDYGADPYRESGIQNLFYMSKHTVCRLAAMAKAGGVELKEDVILD---RRPAWR--- 288

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
                F      D    ++        +     V L       EE   +   +   + E  
Sbjct: 289  ----FAQSPALDFLEQNLYRYNGRAWKGEQDQVKLFCGQTPEEEVRYVKSRIESLVREQG 344

Query: 387  ---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               +  A+ T D     R    +  + GI   +     +       ++ ++L A+ +   
Sbjct: 345  LRYRDMAVATGDLAAYGREITRQFDQAGIPFFMDDKKSILENPMVELIRAVLEAV-RDFS 403

Query: 443  FMAIATLVKHPLAKFGFP---------------------EKYLSRA----KNALELVALR 477
            +  +   +K  L                                 A       + L    
Sbjct: 404  YENVFRYLKTGLVYDRAEGTADEAQPVWENAAGADSGGEAIDWEEASDGELADVLLGETG 463

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE----------LAVLLVDHI 527
            G  +     +  +++ DR+        +  W+   S+ + +                  I
Sbjct: 464  GGADRRYSREEAAVMTDRLENYVRALGINGWKRWDSQWEAQFKGAENLNLQELNAFRQWI 523

Query: 528  LQCITPL-------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFE 578
            L  + PL        T  +   +    L   +  +              R   NL   + 
Sbjct: 524  LAPLRPLREAMSKDATVASVTQALRNYLESMELREKLEEYQAYFAARGLRGDENLAREYG 583

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            +    +  LF ++       KA    +  I+        V         + +     +RL
Sbjct: 584  QVYDRVEELFERLTGLLGDEKAERKSYAQILDAGFGEIQVGVIPATIDQVMVGDITRTRL 643

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMA 691
                 L   G+N+GV P+       L    +        +L     E    Q  + + M 
Sbjct: 644  DGVQVLFFVGVNDGVVPQRKNGGSLLGDRDREFFKAHRLELAPTAREDGCMQKFYLYLML 703

Query: 692  NG-TRHLIYTRSLRE-NNIPTIASRWLQRL------------------------------ 719
            +  +R L+ T + R  +      S  L  +                              
Sbjct: 704  SKPSRRLVITYAGRSADGKSLRPSVLLGEVYKLFPGLTAEDGSTVKWPVQTPRDGKETLI 763

Query: 720  -----------LVLGGTDFFDNLKKR-----------GQCYLDWTRKLDYTTKQPHYKR- 756
                                D+  +R            + Y +  + L       + +R 
Sbjct: 764  QGLKTYRDLKEPDAADGALEDSQWERKFLELYRWFFGQEDYREEVKLLVQAAFYSYEERG 823

Query: 757  --PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                    L  +    S + ++Q  +  YA + R  L+L      + + +  D G LFH 
Sbjct: 824  IGRAAARALYGKILQGSVTRLEQYASCAYAHFLRYGLELMERR--EYELEAVDMGNLFHQ 881

Query: 815  IITELI-------KKRINKNTPEINHLMKQIIDSHFEKEN----LPPHIDIIWRHLFHKI 863
             I           +   N        L+K+ +            +             ++
Sbjct: 882  SIDRCFQVMKAQGRDWRNLTEEGRQGLVKESVSQVVADYGNTIMMSTARYAYLAGRVERM 941

Query: 864  SHS--FLEHEEKIQSSIEKIFVNIPAK-------MAI---ESIGIHLTGFADRIDLLKSG 911
            +    +   E+  +   E     +          M I       + L G  DR+DL + G
Sbjct: 942  TDRTIWALAEQVKRGDFEPAGFEVSFSAVDNLKAMRIALSPDEELQLRGRIDRMDLCEDG 1001

Query: 912  FVD---ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRL 965
                  I DYK+G            +  QL +   A       +   ++V  A +FY  +
Sbjct: 1002 GTLYVKIIDYKSGGTSFDLAALYYGLQLQLVVYLDAALEMEERKNPGKEVVPAGIFYYNI 1061

Query: 966  KQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                  D +   K+  + +E+ ++ L+ L 
Sbjct: 1062 -----QDPLVEKKEAMTPEEIEQQILRQLR 1086


>gi|121535717|ref|ZP_01667520.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans
           Nor1]
 gi|121305682|gb|EAX46621.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans
           Nor1]
          Length = 1160

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 123/981 (12%), Positives = 250/981 (25%), Gaps = 144/981 (14%)

Query: 53  TKRAIQELRSEFIEITGKKSTIL--PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL 110
           T R +  +R    +       +L  P   +     E +  A   LS  +   V   +RL 
Sbjct: 15  TSRCLDAIRERLRQAPDGPPLLLIVPEQATFQ--AERELAATPGLSGFVRAHVMGFRRLA 72

Query: 111 --ELAR-------LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
              LA         +     +L            L L    A     A  LA +I   +T
Sbjct: 73  YRVLAETGGGAAPHLTDLGKRLVLRRLLTERRDELKLLGQAAAQRTFADTLASLIWEFKT 132

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                + + A                L +  K + + L      +     + L+ A+   
Sbjct: 133 YGIAPDKVAAASERLGATPLAAKLHDLALLYKAFEDFL--QGRYTDPEDCLRLLAAKIPA 190

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                   + + G     P    ++  + +      V   LD   P A  +       + 
Sbjct: 191 ATLTRGAEVWVDGFEWFTPQEYGVLEALLSAAKDVTVTLCLDE--PDAPHHADETALFHR 248

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
           +            SL      L +   +               ++ +             
Sbjct: 249 SWKTR-------QSLRARAARLGVSCRE--------------EVLTAVRRFQAPILAYVE 287

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSALITADRN 397
               + + P  +     + + EA N R E   IA  +    R      +  + L+     
Sbjct: 288 RYANDARPPAWRGDKQGLTIAEAANRRTEVEGIARDMIRLCRDEGYRWRDMAVLLRDMDG 347

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
               V+  L  + I        P      + ++ S L  + +   +  +   +K  L   
Sbjct: 348 YIDLVETVLADYDIPFFSDRQRPAVHHPLAELIRSALEVVTERWAYEPVFRCLKTDLFPL 407

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
              E  L      +    +RG++ + D        L      + +     +  R++    
Sbjct: 408 SRDEIDLLENY--VLEFGIRGSRWTKDEPWTFVRRLSLDEDAEPDERQQAYLDRINAIRC 465

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             A  L+    Q +T   T +    +  G L+  D                         
Sbjct: 466 RAAKPLI-RFEQALTQAETVREMTAALYGLLADLDVPATLEKWA-AAASTARDPEQEREH 523

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            +   ++  L  +I++T      +  ++  ++   ++G T          + +   L   
Sbjct: 524 RQIWHSIVDLLDQIVDTCGEQPMSLTDYAAVVNEGLEGLTFNIIPPGLDHVTV-TPLTRA 582

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-------KYIGQAAHDFEM 690
            L    + L G+N+GV P+   +   LS   +++L     E           +    +  
Sbjct: 583 RLAAKVVYLPGVNDGVLPERGREEGLLSDRERAELASLGLELGPTREADVFAEQFVVYTA 642

Query: 691 ANGTR-HLIYTRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC----------- 737
                  L  +  L +        S  ++RL  L G +    L                 
Sbjct: 643 LTRASDRLWVSFPLADAEGKALAPSLIIRRLKELSGIEALKPLPVEPPPGAEDEYIVHPR 702

Query: 738 --------------------------------YLDWTRKLDYTT--------KQPHYKRP 757
                                             D    L            +Q      
Sbjct: 703 RSLAALAAGLRPALAGQPVGTLWRDLYNWAVARPDLAADLRRAVAGLFHRNQEQALPPEL 762

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
                        S +  +     P+  +AR  L L             D G  FH  + 
Sbjct: 763 AQRLYRRQGKLRGSVTRFEGFQACPFQHFARYGLALKER--AVAQLKAPDFGQFFHAALR 820

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH------------------- 858
           +   +   + T +     ++  D   E+        +                       
Sbjct: 821 QFGLRIEKELTADNQRRWQRWGDVQDEEIGPLCEAIVQELAPKLQNEILLSSAQYRSITR 880

Query: 859 LFHKISHSFLEHEEK--IQSSIEKIFVNIPAK----------MAIESIGI-HLTGFADRI 905
              +     +    +   +S  + + +               + +    +  L G  DR+
Sbjct: 881 RLQRTLQRTVTRLVRLDRRSRFKPVALEQAFGRDGAALPALVLTLRDGTVLELVGQIDRL 940

Query: 906 DLLKSGFVD---ITDYKTGDN 923
           D+ +        + DYK G  
Sbjct: 941 DMAEHQGRRLLAVIDYKAGGA 961


>gi|313636694|gb|EFS02364.1| ATP-dependent nuclease subunit B [Listeria seeligeri FSL S4-171]
          Length = 1056

 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 124/962 (12%), Positives = 285/962 (29%), Gaps = 134/962 (13%)

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
           L +     +       LA++   ++ EE    DL     +            + +  + +
Sbjct: 4   LKVFSRATSRKGFYSELANLFKEMKQEEVSIIDLEE-SAKMLPTSVNNKVHDISLIYQKY 62

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
            E L            + L+  +        +  III G          ++  +    + 
Sbjct: 63  EELLA--GKFLENEDYLKLLADKIAESDYLNQTEIIIDGFNSFSKQELTVIEKLMQKCDK 120

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +   L+      I   + E S    S+         YSL +     +I  E++K L  
Sbjct: 121 LTISLTLNV---PEIERGLEEFSMFRASTEAY------YSLLETAKLNNIPVEEIKLLLE 171

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                      ++  +                   + Q   +++ + +A+N+R E   IA
Sbjct: 172 NKRAKTPPLEFLANVWGQNKF-------------ASFQGETTNLNIHQANNKRAEIEGIA 218

Query: 376 IALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
             +R       +    A++T +  +     +  +  + I I I     ++       + S
Sbjct: 219 REIRELTSNGYRYKDIAILTRNLGDYDVLCETVMEDYNIPIFIDKKRAMAKHPFIEFIRS 278

Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            L+AI     +  I   VK             + R  + LE   L     +    + K  
Sbjct: 279 SLDAIQFNWKYEPIFQAVKTEFFFDSAADAADMRRKSDILENYVLENGVQNKWKWEKKGD 338

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            + R         +       ++E+  +  ++ +   + + PL T +TN       + ++
Sbjct: 339 WIYR-----KIRGLSINVLPQTDEELNIQNMINEMKNRIVIPLSTLETNLAKAKTGIELA 393

Query: 552 DWT---------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                          +   +    +          E+   ++++L  + +E         
Sbjct: 394 LALYHYLEQVQAAEHLEAWRRTAEENGYLELAREHEQAWTSITALLDEFVEVLGEESLEL 453

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             +++II   +D             + +     ++LL+   +   G+N+GV P       
Sbjct: 454 SSFMEIIITGLDALEFSLLPPSLDQVILSDMENAKLLDMKVIFAIGMNDGVMPLRQKDKG 513

Query: 663 FLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPT---- 710
            LS   +  L         +A+  IG+            +  L  +  + +         
Sbjct: 514 ILSDQDRESLREQNSSLKPSAKNNIGEEDLLAYKIVSLPSDKLFLSYPVADEEGKMLSES 573

Query: 711 ----------------------------IASRWLQRLLVLGGTD-FFDNLKKRGQC---- 737
                                         SR+++      G       + KRG      
Sbjct: 574 NYLRKIKGQFKNLNEEIYLTDPSLLSDEEQSRYIRSKRAALGLLTSQLQMYKRGYPLSNV 633

Query: 738 -YLDWTRKLDYTTK---------------QPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
            +  +    D   +               +    +      L  +    S S +++  + 
Sbjct: 634 WWDAYNSYFDDKKESKNAKQVLSSLYYENKTEALQEATAKGLFGEDIHASVSRMEKFFSC 693

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------EI 831
            +  +A+  LKL+   HF+      D G +FH  +  + ++    N            E+
Sbjct: 694 EFQHFAQYGLKLEERAHFQ--LQAVDMGEIFHAAMEWITEELKRNNLDWGILTVGECKEL 751

Query: 832 NHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK 888
             L  + +    + E L         ++   +I      + +E+   S+   + + +   
Sbjct: 752 AKLAMKFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFG 811

Query: 889 MAIESIGIH----------LTGFADRIDLL-KSGF--VDITDYKTGDNP-KKETAQKLID 934
           +  +   +           L G  DRID+  +     + I DYK+  +          + 
Sbjct: 812 LKGDIPPLKIPLQSNRELLLQGRIDRIDVAEEDNRTFLRIIDYKSSSHDLALTEVYYGLA 871

Query: 935 PQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
            Q+      +   +   I    + A + Y  +  +F        +++ + +      +K 
Sbjct: 872 LQMLTYLDIVVTNAQKMIGKSAEPAGVLYFHMHNQFVQAEKELTEEEIAKEIQKASKMKG 931

Query: 994 LI 995
           LI
Sbjct: 932 LI 933


>gi|171779649|ref|ZP_02920605.1| hypothetical protein STRINF_01486 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
 gi|171281751|gb|EDT47185.1| hypothetical protein STRINF_01486 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
          Length = 1080

 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 119/969 (12%), Positives = 272/969 (28%), Gaps = 147/969 (15%)

Query: 129  DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188
              + ++ L +           K L D+   ++T      DL  L             + L
Sbjct: 95   SHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLDLKEL-------HSAEKQEDL 147

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMS 247
                    + L+     +         +  + HL    +  + +I G T        L+S
Sbjct: 148  VKIFLAVNDILLANQYDNQSKIAFFTKQVASGHLDDALENVVLVIDGFTRFSAEEEDLVS 207

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +       I+          A ++T      ++                + L      +
Sbjct: 208  LLEEKCAQVIIGTYSSQKAYKATFSTGNVYQASLD-------------FLRSLAAKFQTQ 254

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
             +       S E + +   + ++     TSD+  T   +                   N+
Sbjct: 255  PEYVESSQKSQEAFAKLSKLFEAKHDFTTSDITLTHDDKEHYAIWDVI----------NQ 304

Query: 368  REEAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424
            +EE   +A A+R  L +  +     ++  D +  R        ++ I         +S  
Sbjct: 305  KEEVEHVAKAIRHKLHQGYRYKDILVLLGDVDSYRLQIGKIFDKYEIPYYFGKAESMSDH 364

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                 + SL            +  L+K  L      +                       
Sbjct: 365  PLVHFIDSLERVKRYRFRMEDVVNLLKTGLYGSFTQDDLDL------------------- 405

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                +  ++      ++        +   EE       + + I+    PL+T    +   
Sbjct: 406  ---FEQYLIYADIKGQSKFAKEFTIAYKGEEHLAYINGMREQIM---APLLTLFKAQKQL 459

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRK--------LPNLWFEEEGKTLSSLFSKIIETGS 596
                  S   +  +T L+ + L E+ +              E+  +T + +  +      
Sbjct: 460  G-----SSLLEKLMTFLRAISLPENLERTVATFSENEQEKHEQVWRTFTGILEQFQTIFG 514

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
              K +  E++ ++   +     +        + +             +   G+ +  +PK
Sbjct: 515  QEKLSLDEFLALLRSGMLAAQYRVVPASVDVVSVKSYDLVEPHTNKFVFALGMTQSHFPK 574

Query: 657  NTAKNPFLSRVMQSDLNLKTAE--KYIGQAAH-----DFEMAN----GTRHLIYTRSLRE 705
                   +S   ++ +N  TA+  ++   +        F   +     T  L+ +     
Sbjct: 575  IAQNRSLISDEERAKVNETTADNQRFDVISRENIKKNHFAALSLFNSATEELVLSLPQIA 634

Query: 706  NNIPTIASRWLQRLL-----------------------------------VLGGTDFFDN 730
            N      S +L  L                                     L   +  + 
Sbjct: 635  NESEDKESSYLAELASFGVPVLVKGRNRLSTDAEDIGNYKAFLSRVIEVNRLAIEEDREL 694

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPF---------------PPLEAQPRTYSFSEI 775
             K+    +    R L         + P                       +P   S S +
Sbjct: 695  SKEEQTFWSVAVRYLRKKLANEGVELPLIKDNMQTKPVSAEVIETHFPSDEPINLSSSAV 754

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
                N+ Y  + + +L L  +      PD  + GT  H +   ++K   ++   +  +  
Sbjct: 755  TTFYNNQYKYFLQYVLGLQEVETIH--PDARNHGTYLHRVFELVMKDASDQAFDDKLNRA 812

Query: 836  KQI--IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
             Q    +  F+              +   I+ S      +  + I+      P ++ + +
Sbjct: 813  IQTTNAEDAFKFVYEEDEESRYSLTVLEDIARSTATILRQD-AQIQVENEEEPFELMLAN 871

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQI 952
              + + G  DR+D L  G + + DYK+  N    +     ++PQL     AL+       
Sbjct: 872  A-VRIRGIIDRVDRLSDGSLGVVDYKSSHNTFDIQKFYNGLNPQLVTYMQALRDKKIKS- 929

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
            +  K+    Y+ +      +   +     + +++ E   K L     L    E+ ++S+ 
Sbjct: 930  ESDKIFGAMYLHM-----QEPKVDLSSVATTEKILENLSKELRYR-GLFLEDEKGYLSNG 983

Query: 1013 RLSEKSNIQ 1021
                  ++ 
Sbjct: 984  NYHLNDSVY 992


>gi|238926788|ref|ZP_04658548.1| ATP-dependent deoxyribonuclease subunit B [Selenomonas flueggei ATCC
            43531]
 gi|238885320|gb|EEQ48958.1| ATP-dependent deoxyribonuclease subunit B [Selenomonas flueggei ATCC
            43531]
          Length = 1198

 Score =  187 bits (474), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 115/1001 (11%), Positives = 263/1001 (26%), Gaps = 150/1001 (14%)

Query: 93   LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL 152
            L       P +S+I R + L  ++L    +L    + ++                  + L
Sbjct: 80   LETGGEHLPRISDIGRRILLKDILLQHSRELSVFQRSVHKR-------------GFTEVL 126

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF--LKIASKYWTERLVELNASSPVGY 210
               I  ++ +    + L    +   G    L+A    L         R+      +    
Sbjct: 127  GHTIAELKRDRLSSDHLRQAADVSTGEHARLSAKLTELATIMDELAARME--GRLTDHTD 184

Query: 211  QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD-CHIPTA 269
            ++  + A+           + + G     P    +   +    +   V   +D     T 
Sbjct: 185  RMERLAAQLIDAPFLRGAELWVDGFDFFNPQELAVFRALFRVVDTVHVSLTMDGRDDGTH 244

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
            ++  + E   +      +Y T                    +              ++  
Sbjct: 245  VFTNLPENIYDTGLFARSYQTMHL---------------LQQIFTEEQPSAEIGIRLMPV 289

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--- 386
                           L             + ++EA N R E  + A  +     +N    
Sbjct: 290  QHRARTEGLRLLEAQLFGHGHITPAKDDSIRIVEAANPRLEVETAAADILRLARDNGYRY 349

Query: 387  KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
            ++ A++  D +L   +        GI   +    P +    + +L ++    ++   +  
Sbjct: 350  REIAVLVRDVDLYGDLLSLAFADCGIPFYLDVKRPSAHHPLAELLRAVAQMTWRGWAYET 409

Query: 446  IATLVKH---PLAKFGFPE------KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            +   ++    PL      E           A + LE   L     S              
Sbjct: 410  VFRALRTGFFPLLGTEEDEDAPPLCADWQEAVDRLENYCLAYGIRSESQWTATEPWDFVQ 469

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL--SISDWT 554
                    +   +      +++    L   I + ++ L  +     ST      ++ D+ 
Sbjct: 470  RR-VTEHELHLDEEEERLREEQWLDHLRRRIAEPLSLLTGHLRRHESTARVRTKALYDFL 528

Query: 555  KLTV-----TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
                              E R        +   +  +LF +++E       ++ ++ +++
Sbjct: 529  DELCVPQTLRLWSETADREGRLADAAAHRQIWSSCMALFDQLVEVRGDDPLSSRDYEELL 588

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
            +  +D  ++         + +    ++ +     + + G N G+ P+    +   S    
Sbjct: 589  SDGLDAMSIALIPPGLDHVTVASFDQNSIAGARAVFVIGANAGIMPRAGTTSGVFSDTEL 648

Query: 670  SDLNLKT--------------AEKYIGQAAHDFEMAN--GTRHLIYTRSLRE-NNIPTIA 712
              +                    +      +           +L  + +L   +      
Sbjct: 649  LFIGESLQTAGADSGHTVFGGRTQQSFLERYQLYRGFTEARDYLWVSYALSSVDGSTLAP 708

Query: 713  SRWLQRLL-----------VLGGTDFFDNLKKRGQCYLDWTRKLDY-------------- 747
            S  + RL             L G D    L      +   T  L                
Sbjct: 709  SPLIARLRRISSSFFSIPLALAGRDDPLLLSAPYPAFSHLTAALREKKERGEMPAMWGDV 768

Query: 748  ------------------------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                                      +               +  + S + ++     P+
Sbjct: 769  YNWMLQDAVMQPLLRRMLHGLFLPPREVSIPAPVAARLFTRDRRLSGSTTRLETFRQCPF 828

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT---ELIKKRINKNTPEINHLMKQIID 840
              +A   L+L      + +    D GTL H I+    E ++     +         + I+
Sbjct: 829  RHFAMYGLRLQQRD--RYEFQSNDFGTLLHGILRGYGEWVRSAYGNDWCAALAEAPEKIE 886

Query: 841  SHFEKENLPPH-----IDIIWRHLFHKI---SHSFLEHE--EKIQSSIEKIFVNIPAKMA 890
               ++     H         +RH   +I   +   ++H       SS       I     
Sbjct: 887  ELLQELIPQVHSTVLMSRASYRHRIERIRCTAQQTIQHLTSWAAASSFHPYGFEISFGRR 946

Query: 891  -----------IESIGIHLTGFADRIDLLKSGF-VDITDYKTGDNP-KKETAQKLIDPQL 937
                        + + + L G  DR+D++       + DYKTG         +  +  QL
Sbjct: 947  NDGVRLADFPLADGMTLSLRGQIDRLDVMDHHAYYLVLDYKTGATSLLLPEIRHGLKMQL 1006

Query: 938  SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
             L    ++  S         A + Y  +K       +  D+
Sbjct: 1007 LLYLFVVR--SILDTGEVFPAGMLYAPVKNPIVPCNVRLDE 1045


>gi|187251692|ref|YP_001876174.1| ATP-dependent nuclease subunit B-like protein [Elusimicrobium minutum
            Pei191]
 gi|186971852|gb|ACC98837.1| ATP-dependent nuclease subunit B-like protein [Elusimicrobium minutum
            Pei191]
          Length = 994

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 127/1084 (11%), Positives = 291/1084 (26%), Gaps = 197/1084 (18%)

Query: 24   ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
              L G L E       NP  L  V +  P+ R  + L+    E  G  +        +  
Sbjct: 9    GALEGALKEVVAGIKQNP--LEKVLVLTPSSRLSRYLQIFLTENYGSTAN-------ISF 59

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            +     +A +   +          + L  A+ +  +  K       L     +S   S  
Sbjct: 60   MKFSALSAKIDAEFTAP-----NTKKLLSAQHLQNFILKNIVGENGLVKRVYISALKSTL 114

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE-L 202
              +  A  +   +     E        A   ++   +       L    + +   L    
Sbjct: 115  RDMADALIVPATLKEHAAEG-------AFGAKEDNEYMSA----LADTYERYQRALSSVP 163

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
               S   Y  +++          +   +I  G          + + V  +    +     
Sbjct: 164  GMRSYKEYFESVVENIPASKFLSSFKAVIFYGFYDFTGTQLEIFNAVRQNYKTIMFF--- 220

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
              +  T  +   ++   +                      L + +E V+           
Sbjct: 221  -PYRKTQAYKFTSKFFESNI--------------------LGMSKETVE----------- 248

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                      P         D L N + + +    ++ +I A     E  + A  +    
Sbjct: 249  --------LEPAPGVLGAAEDALFNHLISGEAENKNIRIISASGVNGELFAAAKTILELT 300

Query: 383  DENK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
            + N     + AL           +     +  I ++ S    L +        +LLN   
Sbjct: 301  ENNGYKFSEIALCARVLEPYKNNLINIFEQNKIPLNTSLEFGLLSHPLGIFCFNLLNLAH 360

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                   + +++K                                +   L    L     
Sbjct: 361  NGFYREDVLSVIKSQYFAVK------------------------NNWRALAQNSLV---- 392

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                  +  W++ ++++D       +  +    T L  +         +       +  V
Sbjct: 393  ---ERGLEQWENLINKKDPAYDSSFLSFLTNLGTQLGFFNKPYPWDVLSKHAVKILEDFV 449

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                 +   E      +    +     + FS + E+         E+++ +   +  ++V
Sbjct: 450  D-ANILTEGEKTVFNTI---VDTIIQINQFSLVRESAKE-----KEFLEELNEALKEQSV 500

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------ 672
                     +     +  R  +F  +IL G+NE V+P+   ++P L    +  L      
Sbjct: 501  GKVQNSELGVTAGDVMGLRGQHFKVVILLGVNEKVFPQIVREDPLLRDKFRRTLRDVQGF 560

Query: 673  --NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGG----- 724
                K       +  + F +++    L  +    +     +  S +L  +    G     
Sbjct: 561  WIGQKLDRFEEEKLFYYFTLSSAREKLFLSFQRSDEEGKAVVPSLYLTEVCRAAGIELEK 620

Query: 725  ---------------------------------TDFFDNLKKRGQCYLDWTRKLDYTTK- 750
                                                 +N+K  G  +       +     
Sbjct: 621  NITNISRRELEKYFQTPQEFLNSKEMLTKIFSFPSVEENIKAAGFDWDALASYYNAAKAM 680

Query: 751  --------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF--K 800
                                     + +S S ++ L   P   +  + L LD       +
Sbjct: 681  SARSSLGAYDGIVNYGDEIFSSLSKKGFSASALQNLAECPMRFFFIKALGLDEEADILKR 740

Query: 801  KDPDRTDRGTLFHNIITELIKKR-INKNTPEINHLMKQIID-----SHFEKENLPPHIDI 854
                   +GT++H I+  +  +     +       +++I+        +++  L P +  
Sbjct: 741  DAIASNIKGTIYHKILQRVYTEIDREISMDSALAALEKIMALEMSFERYKEFGLYPVVWQ 800

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIGIHLTGFADRIDLLKSGF 912
            +           F++ + +       +     A  K       I L G+ DRID      
Sbjct: 801  VITEKMAAALQEFVKKDVESMEGFAPVMFEAAAAAKHDFAGEEIKLHGYIDRIDRRG-KE 859

Query: 913  VDITDYKTGDNPKKET----AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
              I DYKT      +            Q  +    L   +  + +     +  ++ ++  
Sbjct: 860  YRIIDYKTSQR-SVKDLKKVIFNKKYLQPVIY-WILA-SALKEFEEMNNTSFSFLNIEDG 916

Query: 969  FKIDCITNDKKKYSAD-ELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHL 1027
            +        ++  SA+ +L +    N I+++T      + FI+     E +     + ++
Sbjct: 917  Y------FRRELTSAEFDLIKDKFDNFIKLLTGFIKHGKFFINE---GENNCKYCTFANV 967

Query: 1028 ARVA 1031
             R  
Sbjct: 968  CRKG 971


>gi|242373133|ref|ZP_04818707.1| ATP-dependent nuclease Rex subunit B [Staphylococcus epidermidis
            M23864:W1]
 gi|242349084|gb|EES40685.1| ATP-dependent nuclease Rex subunit B [Staphylococcus epidermidis
            M23864:W1]
          Length = 1155

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 280/989 (28%), Gaps = 145/989 (14%)

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIA 191
            ES L L  S +     ++ LA+ I   +      + L    +E           + + + 
Sbjct: 104  ESELKLYRSQSRYYGFSEKLAEQIQDFKKYSVTPDHLEQFISEHQLQTRTQHKLEDISLI 163

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             ++   R+      +        +   ++      +  I I G         R++  +  
Sbjct: 164  YRHLEARMSGE-FITTEDSLEQFIDQMSQS-EWLKRAEIFIDGFHNFSTLEYRMIEALVQ 221

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
            H     VL   D +              ++    +   TH    L  +   L+I+    +
Sbjct: 222  HAKKVTVLLTTDGNQDQ----------FSLFRKPSEVLTH----LEDIASHLNIELNKTQ 267

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                   E      + S       T                    + + ++E+ + REE 
Sbjct: 268  FNHRYRFENKDLKHLESDFDALQMTPQGH---------------SNAIEILESSSMREEV 312

Query: 372  ISIAIALRMSLDEN---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
              +A  +   + ++    +  A++  D + A         + I  +I     +S      
Sbjct: 313  NELARRILRDVRDHQLRFQDIAILYRDESYAYLFDSIFPLYDIPFNIDTKKSMSHHPIME 372

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            ++ SL+  I    +  A+  L K  +              + LE  AL         +D 
Sbjct: 373  MIRSLIEVIQSNWNINAMLRLFKTDILTSQLKNSSYL--IDLLENFALERGVYGKRWLDE 430

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLS-EEDKELAVLLVDHILQ---CITPLVTYKTNKNST 544
                +++       +H    + R + EE   L   ++D +L     ++   T +    + 
Sbjct: 431  DIFNVEQFNKMGRKSHALTPEERETYEEVIRLKNHVIDKVLYFEKAMSEATTVRDFATAF 490

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
              ++   +     +T    +             ++       +   ++        +  +
Sbjct: 491  YESMEYFELPNQLMTERDEL-DVAGAHQQAEEIDQIWNGFIQILDDLVTVFDTQDMSLKQ 549

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            ++++    ++        +    + I     +++ N   + + G+N+G  P+  + +  +
Sbjct: 550  FLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYMVGMNDGSLPQPVSSSSLI 609

Query: 665  SRVMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSLRENNI-PTIASR 714
            +   +             T++      A      M    + + ++ SL  N+      S 
Sbjct: 610  TDEEKKYFEQNADIELSPTSDILQMDEAFVCYIAMTRARQKVTFSYSLMGNSGDEKEISP 669

Query: 715  WLQRLLVLGGTDFFDNLKKRGQ-------------------CYLDWTRKLDYTTKQPHYK 755
            +L ++  +       N+ +  +                       W  + D   +     
Sbjct: 670  FLSQIKDMYHHLEITNIHQEHEEQPISLMQHVHQTKIELFDALRAWLDQEDVDIRWLDAY 729

Query: 756  RPKPFPPLEAQ-----------------------------PRTYSFSEIKQLINDPYAVY 786
            +         +                                 S S  +     P+  Y
Sbjct: 730  QVIRDDERLNRGLDYLITSLTYDNETIQLNESLTQQLYGKTINASVSRFEGYQQCPFKHY 789

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            A   L+L+     K +    D G +FH+++  +  +            ++ + +   E  
Sbjct: 790  ASHGLRLNER--TKYELQNFDLGDIFHSVLKHISDRVEGDFKNLDRKKIRALTEEALEMI 847

Query: 847  NLPPHIDII--------WRHLFHKISHSFLEHEEKI--QSSIEKIFVNIPAK-------- 888
                  +++               I  + L   +     S           +        
Sbjct: 848  LPKVQFNLLNSSAYYKYLSRRIGSIVETTLSALKYQTGFSKFVPQRFETGFRKSPKNKEE 907

Query: 889  ------MAIESIGIHLTGFADRIDLL--KSGFVD-ITDYKTGDNP---KKETAQKLIDPQ 936
                     + I I++ G  DRID           I DYK+  +            +  Q
Sbjct: 908  LVAQPLHTKQGIPINIRGQIDRIDTYTKGDHSYVNIIDYKSSTSSATLDLTKVYYGLQMQ 967

Query: 937  LSLEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSL 991
            +      +    +    + I   K   L Y  + + + K +  +   ++    EL +   
Sbjct: 968  MMTYMDIVLQNQERLGLTDI--VKPGGLLYFHVHEPRIKFENWSKIDEEKLDKELIKSFK 1025

Query: 992  -KNL----IEIVTLLQNGEQP-FISHLRL 1014
               L     E++  + +  +P F S +  
Sbjct: 1026 MSGLLNSDEEVIDAIDSRMEPSFTSDIVP 1054


>gi|165924170|ref|ZP_02220002.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
 gi|165916385|gb|EDR34989.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
          Length = 680

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 105/696 (15%), Positives = 213/696 (30%), Gaps = 76/696 (10%)

Query: 362  IEADNEREEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGI----NIDIS 416
            +   N   E  ++A         E  +K   +  D    R   L L         + +IS
Sbjct: 34   VNFQNSEMEIQTMARWAYAQWEKEPNQKIGCVMPDLTQHRTQVLRLFTEIFGSSEHFNIS 93

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
                L+    + I    L       D M + T+ +         +               
Sbjct: 94   VAESLTQIPLTQIALKCLELDPFKIDIMQLGTVFRSSYINSRTVDVC------------- 140

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV--LLVDHILQCITPL 534
                       L + +  ++    +    P +      + +       L       +   
Sbjct: 141  -----------LAAQLDVKLRESAHWQANPAFILYHLHQLQPHFQSTTLTTRCQTWL--- 186

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                     +   L  S W +     L  +     R L +  +++  +  + L       
Sbjct: 187  ------SKRSSTRLFPSAWAQQFSEELTAIGWPGQRSLDSKEYQQWKRWENLLHEYAALD 240

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                +      + ++ +L      +P   ++S++ ILG LE+    FD L + GLN+  W
Sbjct: 241  TFTQQQTRKNALQLLRQLAHHTLFQPMSSQNSSIQILGLLETTGHYFDKLWIAGLNDKKW 300

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIPTI 711
            P   + NPFL   +Q    +  A                      +I +  L+E +I   
Sbjct: 301  PPVASPNPFLPLSLQRRCQMPHASAKREMEYTLQLQNRLLKSAPAIILSTPLQEGDIQLS 360

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
             S  ++    +   D       +   +      L         +  +     E +P +  
Sbjct: 361  TSPLIRHFPEINNEDL------QLPAWQPLKAHLFKIKMLETIEDAQAPALQENEPMSGG 414

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE- 830
               ++     P+  +A+  L+   +       +  +RG   H  +  + KK  +  T   
Sbjct: 415  SGLLQSQSICPFQAFAKVRLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNS 474

Query: 831  -INHLMKQIIDSHF-----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
              +  ++ IID        +++ + P      +    ++  ++L  E+K     E     
Sbjct: 475  SSDGELENIIDETITHLISQEKLIQPLFLNTEKKRLKQLIKNWLLLEKKR-PPFEVSQRE 533

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLE-A 941
                + I    + L    DRID        I DYKTG     +     +L   QL L  A
Sbjct: 534  TKRHIKI--GPLRLEVRIDRID----NNCFIIDYKTGGQNSVDDWFGDRLKSIQLPLYCA 587

Query: 942  AALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
             A +     +++++  +K+     I   +KF            + +EL  +    L  + 
Sbjct: 588  YAAREATGIAYAEVRSQKMTFKGLISANEKFNSFSEVK-PSPLAWNELIRRWKMQLYHLA 646

Query: 999  TLLQNGEQPFISHLRL--SEKSNIQSEYDHLARVAE 1032
                +G+    + +    S+          L R+ E
Sbjct: 647  VDFSSGK----ADVDPLDSKTVCKVCHLHSLCRIGE 678


>gi|194290035|ref|YP_002005942.1| helicase, c_term recb family exonuclease [Cupriavidus taiwanensis LMG
            19424]
 gi|193223870|emb|CAQ69879.1| Putative helicase, C_term RecB family exonuclease [Cupriavidus
            taiwanensis LMG 19424]
          Length = 957

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 156/1046 (14%), Positives = 300/1046 (28%), Gaps = 123/1046 (11%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P   F  +   A         F      P   A V +    +        +       + 
Sbjct: 8    PGPDFLEQAATA------AWYFLDRCGAPEAGAHVVVPTAAQIPGGRQALDAAARAAGRP 61

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
             +LP + +LG  + +       L     P  S   RLL + + +           +    
Sbjct: 62   RLLPRVLTLGHWLLD-------LPPEGAPVRSPAARLLAVQQAV-----------RGQDW 103

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
                    +   A  L++ L  I D +     +   +             L    L    
Sbjct: 104  LRRAFGAQNETAAWGLSQTLLAICDELSARWLEDAAIRDDDEIDGDDRAGLLQGALARTY 163

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
             +    L E          +A  +A +              G    +PA  R +  ++  
Sbjct: 164  SH----LSERFLGEEARIVLAFWQALS--------------GPDDPLPARRRALRELSQQ 205

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
              G ++        P                         + +  +    L         
Sbjct: 206  LRGPVIWIAPTPPTP------------------------LEAAFLRDAAELVPVLRVGYD 241

Query: 313  LGNVSNEMYGRSMVISKSFLPPD--TSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                 +   G    +   +        D          +P +      V +I      +E
Sbjct: 242  WSGQDDGDAGWYHALLALWPEARIAGDDESAVQAAPPAMPALPPRRPSVRVIGCARFEDE 301

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A + A  L   L+  +++ AL+  DR +ARR +  L R G  +    G  LSTT  ++ L
Sbjct: 302  AAAAAAQLVQWLNAGRRQVALVAHDRVVARRARALLARAGAPVRDETGWKLSTTRAAAAL 361

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
                + + +  D  A+  L+K P      P+     A  AL    +R    +     L+ 
Sbjct: 362  MRWFDLLLRDGDTAALLDLLKSPFC---LPDVAARGAAIALLEHQVRREGITGGWARLRQ 418

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            L            H P    + + + ++            IT L               +
Sbjct: 419  LFA----------HAPASTLQDAGDGEDADQAPRRAAHGLITVLADEAARWPRGFAQHPL 468

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
            + W +     L  + +       +   +              ETG     +  E+  +++
Sbjct: 469  ATWLERLDGMLDGLGMRAALAADDAGSQLLDALARLQELPRDETGGHATLSQGEFRAMLS 528

Query: 611  RLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
             L++    K         + IL    +R+  F+ +++ G ++   P + A+  F S  M+
Sbjct: 529  ALLESVAYKEPSASGPARITILPLNGARMRRFEGVVIVGCDDAQLPSSAAELMFFSNQMR 588

Query: 670  SDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDF 727
             +L+L+  E    Q A D   +      ++ T         P   S W++RL        
Sbjct: 589  RELDLEDREARFAQQARDLAEVLLNNDDVVLTWQRYGSRGEPHHVSGWIERLA------- 641

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                 + G           + T       P P       P  +S      L   PY  +A
Sbjct: 642  -ACCARAGVSIEGAATPQAHETFADVRGMPAPAAEPALVPVRWSAQAYNMLRRCPYQFFA 700

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-------PEINHLMKQIID 840
             R+L L  +     + ++ D G   H ++    K+   +          +    + +I D
Sbjct: 701  GRMLGLAGLETVSDELEKRDIGETLHRVLLTYHKELHARRERGETLSDDQRLARLGEISD 760

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAKMAIE---SIGI 896
              F          I +   + ++  S++  +   ++         I A + +       +
Sbjct: 761  EVFGALMAEDGNAIAYYRRWREVLPSYVAWQSAREAEGWFWRGGEIDAGIDLPMPDGQPL 820

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLEAAALKAGSFSQIDC 954
             LTG  DR+D    G   + DYKT    + +   A+   D QL                 
Sbjct: 821  RLTGRIDRLDQGPGGAHAVLDYKTQSATRLKRKLAEVEEDCQLPFYGLL----------R 870

Query: 955  RKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
               A   ++ L   +        +      +       + + + V  L+ G     + L 
Sbjct: 871  ADAAAGSWVSLEGAREGAPAAQREVGLPDFEAAVTWLERQMRDDVMRLRQG-----ARLP 925

Query: 1014 LSEK--SNIQSEYDHLARVAEWREEY 1037
                  + +      L R   W    
Sbjct: 926  AFGDASACVYCTARGLCRKGFWDSTA 951


>gi|284802714|ref|YP_003414579.1| hypothetical protein LM5578_2470 [Listeria monocytogenes 08-5578]
 gi|284995856|ref|YP_003417624.1| hypothetical protein LM5923_2421 [Listeria monocytogenes 08-5923]
 gi|284058276|gb|ADB69217.1| hypothetical protein LM5578_2470 [Listeria monocytogenes 08-5578]
 gi|284061323|gb|ADB72262.1| hypothetical protein LM5923_2421 [Listeria monocytogenes 08-5923]
          Length = 1163

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 123/965 (12%), Positives = 276/965 (28%), Gaps = 124/965 (12%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L  +  L +     +       LA++   ++ EE   ED+                  
Sbjct: 103  AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKVHD 161

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + +  + + E L   +        + L+  +        +  I+I G T        ++ 
Sbjct: 162  ISLIYQKYEELLA--DKFLENEDYLRLLAEKIADSDYLNQTEIVIDGFTSFSKQELTVIG 219

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   +   L+      I + + E S    S+         Y+L +L      + 
Sbjct: 220  ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 270

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K               ++ ++        +N                ++ + +A+N 
Sbjct: 271  EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 317

Query: 368  REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   IA  +R         +  A++T +  +     +  +  + I   I     ++  
Sbjct: 318  RAEIEGIAREIRQLALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 377

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         +  L  R  + LE   L     + 
Sbjct: 378  PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 437

Query: 484  DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
               + +   + R     +   +P    +  +     E+  L+V+ +      L   KT  
Sbjct: 438  WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 497

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599
                      +               E +    L    E+   ++S+L  + +E      
Sbjct: 498  EFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGEET 557

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   + +II   +D             + +     ++LL+   +   G+N+GV P    
Sbjct: 558  LDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 617

Query: 660  KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI--- 708
                 S   +  L         +A+  IG+            +  L  +    +      
Sbjct: 618  DKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 677

Query: 709  --------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-------- 746
                              S +L    +L   +    ++ +       T +L         
Sbjct: 678  SESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYTL 737

Query: 747  YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778
             +     Y                             +      L  +    S S +++ 
Sbjct: 738  SSVWWDAYNSYFENEKESIMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRMEKF 797

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829
             +  +  YA+  LKL+   HF+      D G +FH  +  +  +    N           
Sbjct: 798  FSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLKEEEC 855

Query: 830  -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885
             ++  L    +    + E L         ++   +I      + +E+   S+   + + +
Sbjct: 856  KQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 915

Query: 886  PAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQK 931
               +  +   +           L G  DRID+ +      + I DYK+  +         
Sbjct: 916  DFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEVYY 975

Query: 932  LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  Q+      +   +   I    + A + Y  +  ++         +  + +      
Sbjct: 976  GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKSSK 1035

Query: 991  LKNLI 995
            +K LI
Sbjct: 1036 MKGLI 1040


>gi|220929197|ref|YP_002506106.1| ATP-dependent nuclease subunit B [Clostridium cellulolyticum H10]
 gi|251764557|sp|B8I2Y3|ADDB_CLOCE RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|219999525|gb|ACL76126.1| ATP-dependent nuclease subunit B [Clostridium cellulolyticum H10]
          Length = 1149

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 109/921 (11%), Positives = 240/921 (26%), Gaps = 135/921 (14%)

Query: 147  WLAKNLADIIDIIETEEKKWED----LHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                 L+ +I  ++    + E     L  L ++ Y          +K+    +   LV+ 
Sbjct: 117  GFVNTLSTLITELKRYNVRAESFDEVLQGLADDNYLSH---KLKEIKLIYSEFDSMLVDR 173

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
               +    ++ L+ ++ E      K  I I G  G  P    ++S +        +    
Sbjct: 174  YRDT--DDELTLLSSKLEGTEIYAKSEIWIDGFAGFTPQEVEVISKLIQQAENVHITMCT 231

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            D        +     +    S     S    Y +  L                V      
Sbjct: 232  DILFDDVQADLTDVFAAVKKSCKKFVSIAESYGVKIL--------------PPVCLNTPN 277

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                     L    ++  +      ++P       D+ L E+ N   E    A  +    
Sbjct: 278  LPRFKDSRELQSLETNYCSYSYRAYQLP-----TQDIELFESVNIYTEIEECARDIIKQC 332

Query: 383  DENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             +N    K   + T +      +      ++ I   I +   ++      ++ S+L    
Sbjct: 333  RDNGMQFKDITVATRNLTGYENLIGVIFEQYNIPCFIDSKTEITNHPLVRMVLSMLEIFT 392

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
            +   + ++   +K  L      +  +         +         D              
Sbjct: 393  ENWSYESVFRYLKSGLTGIDNTKIDILENYVLACGIRGSRWTQEADWNTSIEF-RPDDGQ 451

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDH---ILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            +  N  +    ++   E +E  +   +                           I ++ +
Sbjct: 452  KPENDEMLLNINKTRNEIREPLIRFRNRTKGRRTAGDFCAGIYEYLVEIGVEQRIRNYIE 511

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                  Q              +++    L  +F + +E  +       ++ ++    +  
Sbjct: 512  KFTQSGQLRLAG--------EYQQVWNILMDVFDQAVEVMADETFGLEKFANVFKIGLAE 563

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +         + +      R      L + G N+GV+P        LS   +  L+ +
Sbjct: 564  YKISSIPASLDQVLVGSIEHIRSHEIKALYILGTNDGVFPSAGMSEGVLSDADREVLDKR 623

Query: 676  TAE-------KYIGQAAHDFEMANGTRH-LIYTRS-LRENNIPTIASRWLQRLLVL---- 722
              E       +   +    +      ++ L  +             S  + R+  +    
Sbjct: 624  GIELASDTKTRAFDEQYLIYRTLTTPKNYLRLSWPIADHEGRTMRPSTIISRMRKIFPKV 683

Query: 723  ----------GGTDFFDNLKKRGQCYLDWTRKLDYTTK---------------------- 750
                            D +      +      L    +                      
Sbjct: 684  TEKSNIVKPSADKQHIDLIASPIPAFNQLVCALRQKNEGIEQGEIWREIFAWFSGQDEWK 743

Query: 751  -------QPHYKRPKPFPPLEAQPRTY-------SFSEIKQLINDPYAVYARRILKLDFI 796
                        R    P  +++ R         + S +++  + P+A Y +  L     
Sbjct: 744  QKCDAMINALKYRNIAAPVDKSKIRELYGKSPYFTVSRLEKYTSCPFAFYVQYGLGARER 803

Query: 797  PHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDSHFEK---- 845
                      D GT  H +I    K            +    +  + +I+D   +     
Sbjct: 804  K--IYRMSPPDVGTFMHAVIERFSKMVDENNYSWREFDRQWCSEQVSKIVDELLDSMKNT 861

Query: 846  -ENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK---------MAIES 893
                      +      ++     +L  E   +SS E +   +            + ++S
Sbjct: 862  ILGGSKRFKAL-AVRLKRVVTRAVWLITEHIRRSSFEPVGYEVDFGDGGAYPPMVIELDS 920

Query: 894  IG-IHLTGFADRID--LLKSGF-VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS 948
               I L G  DRID    ++G  + I DYK+G+   K       +  QL     AL   S
Sbjct: 921  GEKIRLVGRIDRIDALRAENGTYLRIVDYKSGEKDFKLSDVYYGLQMQLITYLDALWEYS 980

Query: 949  FSQIDCR-KVANLFYIRLKQK 968
                  +     + Y R+   
Sbjct: 981  DKSNGEKIIPGGILYFRIDDP 1001


>gi|16804307|ref|NP_465792.1| hypothetical protein lmo2268 [Listeria monocytogenes EGD-e]
 gi|224500934|ref|ZP_03669241.1| hypothetical protein LmonFR_00185 [Listeria monocytogenes FSL R2-561]
 gi|81507825|sp|Q8Y510|ADDB_LISMO RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|16411738|emb|CAD00346.1| addB [Listeria monocytogenes EGD-e]
          Length = 1157

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 123/965 (12%), Positives = 276/965 (28%), Gaps = 124/965 (12%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L  +  L +     +       LA++   ++ EE   ED+                  
Sbjct: 97   AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKVHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + +  + + E L   +        + L+  +        +  I+I G T        ++ 
Sbjct: 156  ISLIYQKYEELLA--DKFLENEDYLRLLAEKIADSDYLNQTEIVIDGFTSFSKQELTVIG 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   +   L+      I + + E S    S+         Y+L +L      + 
Sbjct: 214  ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K               ++ ++        +N                ++ + +A+N 
Sbjct: 265  EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311

Query: 368  REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   IA  +R         +  A++T +  +     +  +  + I   I     ++  
Sbjct: 312  RAEIEGIAREIRQQALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         +  L  R  + LE   L     + 
Sbjct: 372  PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431

Query: 484  DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
               + +   + R     +   +P    +  +     E+  L+V+ +      L   KT  
Sbjct: 432  WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 491

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599
                      +               E +    L    E+   ++S+L  + +E      
Sbjct: 492  EFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGEET 551

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   + +II   +D             + +     ++LL+   +   G+N+GV P    
Sbjct: 552  LDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611

Query: 660  KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI--- 708
                 S   +  L         +A+  IG+            +  L  +    +      
Sbjct: 612  DKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671

Query: 709  --------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-------- 746
                              S +L    +L   +    ++ +       T +L         
Sbjct: 672  SESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYTL 731

Query: 747  YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778
             +     Y                             +      L  +    S S +++ 
Sbjct: 732  SSVWWDAYNSYFENEKESIMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRMEKF 791

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829
             +  +  YA+  LKL+   HF+      D G +FH  +  +  +    N           
Sbjct: 792  FSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLTEEEC 849

Query: 830  -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885
             ++  L    +    + E L         ++   +I      + +E+   S+   + + +
Sbjct: 850  KQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909

Query: 886  PAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQK 931
               +  +   +           L G  DRID+ +      + I DYK+  +         
Sbjct: 910  DFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEVYY 969

Query: 932  LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  Q+      +   +   I    + A + Y  +  ++         +  + +      
Sbjct: 970  GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKSSK 1029

Query: 991  LKNLI 995
            +K LI
Sbjct: 1030 MKGLI 1034


>gi|229918201|ref|YP_002886847.1| ATP-dependent nuclease subunit B [Exiguobacterium sp. AT1b]
 gi|229469630|gb|ACQ71402.1| ATP-dependent nuclease subunit B [Exiguobacterium sp. AT1b]
          Length = 1145

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 106/961 (11%), Positives = 251/961 (26%), Gaps = 138/961 (14%)

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
            + +      L         E  L+L     N     + L  +I +++    + E L  L 
Sbjct: 85   QFLDQTGTHLLLRRVVEMSEERLTLFRRTMNQFGFYEELNQLISMLKRGLVEPEHLLRL- 143

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
              +      L    L I  + + + + E  +     Y   +++   E     T   + + 
Sbjct: 144  -SEQAQHRALKLQDLSIIYEGFLK-MTEGKSLHAEDYFNVMLQIIPE--TDLTDVHVYVD 199

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
            G          ++  +A   +  ++L              I   S    +     +    
Sbjct: 200  GFNEFSEQELAVLVALAEKVDVDVLLT-------------IDPVSLYRLNPLFGPTQRTL 246

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD-ILENKIPNI 352
                +LL                  ++  R  +    +     S         +      
Sbjct: 247  MRFKELL---------------AERQIPSRDELYDTVYRYTHPSLRYLEATFDQLTAEPY 291

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTR 408
                + + L  A +   E  +    +     E     +  AL++   +         L +
Sbjct: 292  TGSENRIDLHAAVDRTVEVEAAVREVIRLTREEGYRYRDIALVSRSLDEYGDLESQALQK 351

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
             G+   +    P+       +L + +    +     ++   +K  L        +   + 
Sbjct: 352  MGLPYFLDERQPMLDHPLVELLKATIEIALRGYREESVFRALKTELV--VLDPVHRRTSV 409

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
            + LE   +      Y   D   L        +  +        +  E       +++   
Sbjct: 410  DRLEAFVIERGIKHYHWHDEWQLRRRSGEEARLTSEELD----IEVELNRSRERVIETFD 465

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKL--TVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
              ++ L   KT +  T    +  +   +   +T  ++  ++E   L      +    +  
Sbjct: 466  PLLSDLKQAKTMQAYTHAMYAFLERVGVSDCLTHWRDEAIEEAELLEAREHTQVWDAVLH 525

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            L  ++         +   ++ ++   +D             L I   +  RL++   + L
Sbjct: 526  LLEQLEAAAPEETLSTDLFLQMMDTGLDSLRYALIPPSLDQLTITDYVRGRLIDKKVVFL 585

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMANG-TRHLI 698
             G NE   P  T ++  L+                 T   +  +  + ++     +  L 
Sbjct: 586  LGANEDQIPLVTTQSKLLTDQDLDFMHENGLRAGKATEHLFDDETYYLYKAVTAPSERLY 645

Query: 699  YTRSL-RENNIPTIASRWL----------------------------------------- 716
             + +L          +R++                                         
Sbjct: 646  ISYALVDRTGKAVQPARFIADLKARLHQNVIKTHFAEAGEHRPRDQFAFLTNVNQTAAVT 705

Query: 717  -QRLLVLGGTDFFDNLK----------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
               L  L       ++             G+  L       +    P     +    L  
Sbjct: 706  ALELQRLSRHYPIQDMWFAVYNELLKHPDGRERLQLLTSALFYQNIPESLDDRVAKSLYT 765

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI----- 820
                 S S ++     P+  +A   L+L          +  D G L+H  I  +      
Sbjct: 766  PSIRASVSRLETFQACPFKHFASYGLRLKERR--LYRLEAPDIGNLYHRTIEHMSQTVKM 823

Query: 821  --KKRINKNTPEINHLMKQIIDSHFEKENLPP-----HIDIIWRHLFHKISHSFLEH--E 871
              K+  +    E +HL +Q +      E         +     +     +     E   E
Sbjct: 824  DGKEWRDVTPDECSHLAEQAV-ELVTPEIQHAILMSSNRYAYLKKKLTDVVSKTAEVLIE 882

Query: 872  EKIQSSIEKIFVNIPA-KMAIESIGIHLT--------GFADRID---LLKSGFVDITDYK 919
            +  +   +     +         +   L+        G  DR+D   +    +V I DYK
Sbjct: 883  QSKRDGFDPEAFELAFGSGQFPPVSFTLSNGATCELVGRIDRVDTAMVHDQLYVRIVDYK 942

Query: 920  TGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
            +             +  Q+ +     ++       +    A   Y  + +       + +
Sbjct: 943  SSKREVDFAEIYYGLAMQMLIYLKVLIEQAEVWTKENVAPAAALYFHVHRPLVPPASSEE 1002

Query: 978  K 978
            +
Sbjct: 1003 E 1003


>gi|254282614|ref|ZP_04957582.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
 gi|219678817|gb|EED35166.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
          Length = 815

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/858 (12%), Positives = 238/858 (27%), Gaps = 95/858 (11%)

Query: 217  AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI-- 274
                   +     +I      +  +  +  +  +       VL   +  +       +  
Sbjct: 1    MLTALEERLLWQEVIERDMAATGFSLLQPTAAASEAMRCRDVLLRHEVPVDDFSVRRLFG 60

Query: 275  --TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
              ++    +T      +   Q  LA   D L    +      + SN      +       
Sbjct: 61   WDSDCQRFLTWLEHFDTALIQSHLATQADCLRACADVG---SSESNPGETVDLFHCYDLQ 117

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALI 392
            P   + +       +  P  Q   +   L      + E   +A          K  + ++
Sbjct: 118  PLVIAALDRQVQARSISPTEQPETALPPLTTFPTRQAELAEVARWAADRHRAGKGTTVIV 177

Query: 393  TADRNLARRVKLELTRFGI----------NIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
             AD    R +     R              ++ S G+PLS T     L   L  +    D
Sbjct: 178  LADMASDRALLEYALRAEFDCLDARYNELPVNFSLGMPLSATPMYRSLLCALRLMLTSVD 237

Query: 443  FMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
               +  L   P         E         L  +     + +     L            
Sbjct: 238  RSDLLFLFTSPFLPLACRSEESPQLLVIQQLFALGKPNLECTDIRHYLAK---------- 287

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                          +     + ++D   + +   V              + +W  L    
Sbjct: 288  -------------HDPTSPLISIIDRQREELRGRVQLG-----------LGEWHSLFRRM 323

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
            L++        L +L F++  +  +             +    E ++++  +++    +P
Sbjct: 324  LEHWGWPARDGLDSLEFQQFDRLDNVFDDFESLASVRPEVALSEALNLLESVLNDTVFQP 383

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
            K E ++ + +LG  E+  L FD     G      P       F+   +Q+  +  TA+  
Sbjct: 384  KTEATA-IQVLGPREATGLTFDAFWFCGARSTAVPGVPRLLGFIPAALQNQYHFPTADYA 442

Query: 681  IGQAA--HDFEMANGTR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
                      +           +    E+ +    S              +  L+   Q 
Sbjct: 443  SMLQKSEVTLQGFRAASIEFYASWYQFEDGVEQYPSPVFPSCSTPQDIPDYWLLRTSAQR 502

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                   L+     P           E        + +++    P+  + RR + +    
Sbjct: 503  AEIPIDILEDDYGIP--------IDAEDGTSVGGSAILREQAECPFKAWVRRRIAVSAPE 554

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNT------PEINHLMKQIIDSHFEKENLPPH 851
              +      +RG L H ++ E+  + IN++         + +L++ ++D  F +      
Sbjct: 555  PEQLGLSPIERGNLLHAVLYEVWGRIINRDQLLALSMDGLENLVRGVLDQIFGEHIHQDV 614

Query: 852  IDIIWRHLFH-------KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
               +             ++   +L  E       + +      ++ +  +   L    DR
Sbjct: 615  RRRVGAACLELEALCTYRVVLDWLLLERSRNGDFQVVSREDSRRLDLGGLTFSL--RVDR 672

Query: 905  IDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
            ID L SG + + DYK+G          ++  DPQL   A +            K  +L +
Sbjct: 673  IDRLASGEMLMIDYKSGGVGSASYWFGERPSDPQLPAYALSQDRVQGIAWARLKAGDLKF 732

Query: 963  IRLKQK---------FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
            I L  +          K         + +  ++ E     L  +      G     + + 
Sbjct: 733  IALGGELGLNAEKPLSKQLAALGLPPETTWSQVLEGWRDALTNLAAEFGEG----YAAVD 788

Query: 1014 LSEKSNIQSEYDHLARVA 1031
               ++    +   + R+ 
Sbjct: 789  PQPRACDFCDLQGVCRIR 806


>gi|326389379|ref|ZP_08210947.1| ATP-dependent nuclease subunit B [Thermoanaerobacter ethanolicus JW
            200]
 gi|325994742|gb|EGD53166.1| ATP-dependent nuclease subunit B [Thermoanaerobacter ethanolicus JW
            200]
          Length = 1153

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 126/952 (13%), Positives = 266/952 (27%), Gaps = 150/952 (15%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
               K ++++I  ++  E   E L  +      +        + +    + E L   N   
Sbjct: 117  GFIKKVSEVITELKRFEVTPEKLLEITETIDNLGLREKLKDISLIYSKFEESL-HQNYID 175

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                   L   + E+  +       I G TG  P   R++  +    +   +   +D   
Sbjct: 176  QEDELTLLAE-KIEYSSQFEGAEFWIDGFTGFTPKQYRVIEKLLKKASRVNITLCMDTSN 234

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
             +A  +T     T   + +             +    +I  E    L     + +  S  
Sbjct: 235  ISAEIDTTDLFYTTKKTESKLLE---------ICQRNNISYEKPVNLNIGIPQRFKESEE 285

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
            +S       +   +                 D+++ +A N   E    A  +   + +  
Sbjct: 286  LSFIEKHLFSYPYKVYLKE----------TEDISIFKAVNVYSEVEETARDIIRLVRDEG 335

Query: 387  ---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                   + T D     + +K   +++GI   I   I +        +TSL +   K   
Sbjct: 336  FRYSDIVVATRDLNRYHKLIKAIFSQYGIPYFIDLKIEIKNNPIIVFITSLFDIHLKRWS 395

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            + ++   +K         +  L         +     K       L      R       
Sbjct: 396  YESVFRYLKTGFTDLEKEDINLIENYVLANGIKGDKWKEEVWNYRLN----YRFDRLSIE 451

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCI------TPLVTYKTNKNSTCGNLSISDWTKL 556
                    R++E  +++A  L D   +            T             I    + 
Sbjct: 452  EDEKEIIERVNEIKRKIATPLQDFYKKFSKSKNIKEACGTLYDFLVEMKLPQKIEKLIEK 511

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                       E        + +    +  +  +++E     K  A ++  I++   D  
Sbjct: 512  FKE--------EKEYDTANQYAQVWDIVVDVLDQLVEVMGEEKVTAEQFAKILSIGFDEY 563

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS------ 670
             +         + +      +  N   L + G+N+G++P +  +   L+   +       
Sbjct: 564  QIGSIPPALDEVLVTSVDRMKSHNAKALYIIGVNDGIFPASLFEEGILTDGDREILASHN 623

Query: 671  -DLNLKTAEKYIGQAAHDFEMANG-------------------TRHLIYTR--------- 701
             +L+  T  K   +    +                           +I +R         
Sbjct: 624  VELDRDTKTKIFEEQFLVYTALTSTSKFLKISYPIADHEGKSMRPSIIISRLKKIFPKIK 683

Query: 702  ----------SLRENNIPTIASR---------------------WLQRLLVLGGTDFFDN 730
                      +    N  +  S                      WL        ++ +  
Sbjct: 684  QFSNVVEMDTAEENLNRVSTPSPTFNEMVSAVKKWDITNKMHPLWLDVYKWYAKSESWKP 743

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
               R    L +T ++                 L      +S S +++    P+A + +  
Sbjct: 744  KLTRALEGLYYTNQVKKVPAHK-------VKKLYGDEMYFSVSRLEKYAACPFAYFVQYG 796

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-------PEINHLMKQIIDSHF 843
            LK      F  +P   D GT  HN++    K    +            +  +  I+D   
Sbjct: 797  LKAKERKIFSFEPP--DLGTFMHNVLDRFSKALEEEGLTWQDIDREWCDEAVAIIVDDMI 854

Query: 844  EK---ENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MA 890
            +K     L       +      ++  +  ++  E   +SS   +   +          + 
Sbjct: 855  QKIPGYILNSSPRYKYLAERLKRVLSNAVWVVSEHIKRSSFVPLDHEVAFGDNQKYPPIK 914

Query: 891  I---ESIGIHLTGFADRIDL---LKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAA 943
            I       I+L G  DR+D+       ++ I DYK+G            ++ QL +   A
Sbjct: 915  IVLSNGEEINLIGRIDRVDIFEKEDEAYIRIIDYKSGNKTLDLSDVFYGLELQLLIYLDA 974

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            +   + +       A +FY ++      D I    K  S +EL  +  K L 
Sbjct: 975  ILESAINGNTNLNPAGIFYFKID-----DPIIKADKDISDEELQMQIFKKLR 1021


>gi|284992623|ref|YP_003411177.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
 gi|284065868|gb|ADB76806.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
          Length = 1062

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 118/1046 (11%), Positives = 261/1046 (24%), Gaps = 124/1046 (11%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            T+VE         +    + +   ++RA  ELR         ++   P+ ++        
Sbjct: 55   TIVEAVAARIDGGVDPEQILVLTFSRRAAAELRDRVAARVA-RTIREPLARTFHSYAYGV 113

Query: 89   FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
                 LL     P      RLL  A    +    L   +            +        
Sbjct: 114  LRRAALLRGEAPP------RLLTAAEQDALVAELLRGDLAGEGAVRWPESLLPALTTAGF 167

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF---LKIASKYWTERLVELNAS 205
               L +++          E L A   E     WL AA F    +  + + T    + +  
Sbjct: 168  RGELRELLLRATERGVDAELLAAWSRETGNEAWLHAAAFQEQYEAVTAFSTAGGGDASGY 227

Query: 206  SPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
             P     A +    +        +     + +     + PA   L+  +A      +   
Sbjct: 228  DPAELVRAAIAELEDDPALLRAERERARWLFVDEYQDTDPAQVELLQLLAGGGGDLV--V 285

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              D       +     +            +            L + R     L +VS  +
Sbjct: 286  VGDPDQAVYTFRGAEPRGIVEFPERFRTVS----GRPAPRLSLGVCRRSGPALLDVSRRV 341

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
                              +                     +    +   EA  +A  LR 
Sbjct: 342  AE---------------ALPGPWEHRRLAAVEGAEEGAAEVHVFGSASVEAAYVADTLRR 386

Query: 381  SLDENKKKS---ALITADRNLARRVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNA 436
            +   +       A++         ++  LT  G+ +++ +  +PL+     + L + L A
Sbjct: 387  AHLVDGVPWSGMAVVVRTALAIGPLRRALTSAGVPVEVGTDDLPLAAQPAVAPLLAALGA 446

Query: 437  IFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            +            +  P    L         +   +     V +   +   D  +  + +
Sbjct: 447  LLPRPGAEPGTLALDEPGAEALLTSALGGATVLDLRRLRRAVRIAQARRGVDADERGAPL 506

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
               +  +     +P   +R        A  + D +      L    + ++        S 
Sbjct: 507  ATALTDEGLLEELPDAVAR-------PARRVADVLAAGRVALARDGSAEDVLWAMWQRSG 559

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                                 +L         ++ F   + + +           +  + 
Sbjct: 560  LAGRWARASAAGGAAGAVADRDLDAVVALFDAAAGFVDRLPSATVGAFV----EHLSAQE 615

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD- 671
            + G     +   +  + +L    S+ L +D + + G+ EG+WP    +   L   +  + 
Sbjct: 616  LPGVGGAGRESATDAVRLLTAHASKGLEWDVVCVAGVQEGIWPDLRDRGTLLGTEVLVER 675

Query: 672  ------LNLKTAEKYIGQAAHDFEMANGTRHLIYT-----RSLRENNIPTIASRWLQRLL 720
                    L    + + +    F +A               +L   +    ASR+L  ++
Sbjct: 676  VAGIDGAVLDRRVQMLAEERRLFYVACTRARRRLVVTAVEGALDGPDAGATASRFLDLVV 735

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK---------------------- 758
                         R         +L      P  +  +                      
Sbjct: 736  PPPDDGRPLTPLPRSLTLPALVAELRRAVSDPQTEPARRSAAAAVLRRLADEGVPGASPA 795

Query: 759  -----------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                            + +      S I+     P       +                 
Sbjct: 796  DWWGLAPLSDDAPLVPDGEAVRVRPSAIETFQRCPLKWVLGAVGAEASPDAT------RT 849

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
             G+  H +  ++ +       P              +                  +   F
Sbjct: 850  VGSAVHAVAQQVAEGLPAAGAPAALAEELD----QLDLGPGWADQRQRIAAR--DMLDRF 903

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
            L       +  E +       + +      + G  DR++   +G + + D KTG +    
Sbjct: 904  LRWHAA--NGRELLAAEADFDVTVGRA--RIRGQVDRLERDGAGRLVVIDLKTGRS-AAR 958

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
                    QL+    A+ AG+F +           +++    K      D     A    
Sbjct: 959  DIDTHG--QLAAYQVAVAAGAFGEHGEA-PGGAALLQVGSGSKAKEQAQDP--LPAGVPV 1013

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLR 1013
             ++     E+V  + +G       +R
Sbjct: 1014 GETWAG--ELVAQVGDGMGAGTFEVR 1037


>gi|254831296|ref|ZP_05235951.1| hypothetical protein Lmon1_08057 [Listeria monocytogenes 10403S]
          Length = 1157

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 123/965 (12%), Positives = 275/965 (28%), Gaps = 124/965 (12%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L  +  L +     +       LA++   ++ EE   ED+                  
Sbjct: 97   AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKVHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + +  + + E L   +        + L+  +        +  I+I G T        ++ 
Sbjct: 156  ISLIYQKYEELLA--DKFLENEDYLRLLAEKIADSDYLNQTEIVIDGFTSFSKQELTVIG 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   +   L+      I + + E S    S+         Y+L +L      + 
Sbjct: 214  ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K               ++ ++        +N                ++ + +A+N 
Sbjct: 265  EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311

Query: 368  REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   IA  +R         +  A++T +  +     +  +  + I   I     ++  
Sbjct: 312  RAEIEGIAREIRQLALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         +  L  R  + LE   L     + 
Sbjct: 372  PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431

Query: 484  DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
               + +   + R     +   +P    +  +     E+  L+V+ +      L   KT  
Sbjct: 432  WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 491

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599
                      +               E +    L    E+   ++S+L  + +E      
Sbjct: 492  EFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGEET 551

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   + +II   +D             + +     ++LL+   +   G+N+GV P    
Sbjct: 552  LDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611

Query: 660  KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI--- 708
                 S   +  L         +A+  IG+            +  L  +    +      
Sbjct: 612  DKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671

Query: 709  --------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-------- 746
                              S +L    +L   +    ++ +       T +L         
Sbjct: 672  SESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYTL 731

Query: 747  YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778
             +     Y                             +      L  +    S S +++ 
Sbjct: 732  SSVWWDAYNSYFENEKESTMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRMEKF 791

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829
             +  +  YA+  LKL+   HF+      D G +FH  +  +  +    N           
Sbjct: 792  FSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLKEEEC 849

Query: 830  -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885
             ++  L    +    + E L         ++   +I      + +E+   S+   + + +
Sbjct: 850  KQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909

Query: 886  PAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQK 931
               +  +   +           L G  DRID+ +      + I DYK+  +         
Sbjct: 910  DFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEVYY 969

Query: 932  LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  Q+      +   +   I    + A + Y  +  ++            + +      
Sbjct: 970  GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDGAIAKELQKSSK 1029

Query: 991  LKNLI 995
            +K LI
Sbjct: 1030 MKGLI 1034


>gi|254826844|ref|ZP_05231531.1| addB [Listeria monocytogenes FSL N3-165]
 gi|258599222|gb|EEW12547.1| addB [Listeria monocytogenes FSL N3-165]
          Length = 1157

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 123/965 (12%), Positives = 275/965 (28%), Gaps = 124/965 (12%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L  +  L +     +       LA++   ++ EE   ED+                  
Sbjct: 97   AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKVHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + +  + + E L   +        + L+  +        +  I+I G T        ++ 
Sbjct: 156  ISLIYQKYEELLA--DKFLENEDYLRLLAEKIADSDYLNQTEIVIDGFTSFSKQELTVIG 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   +   L+      I + + E S    S+         Y+L +L      + 
Sbjct: 214  ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K               ++ ++        +N                ++ + +A+N 
Sbjct: 265  EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311

Query: 368  REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   IA  +R         +  A++T +  +     +  +  + I   I     ++  
Sbjct: 312  RAEIEGIAREIRQLALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         +  L  R  + LE   L     + 
Sbjct: 372  PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431

Query: 484  DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
               + +   + R     +   +P    +  +     E+  L+V+ +      L   KT  
Sbjct: 432  WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 491

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599
                      +               E +    L    E+   ++S+L  + +E      
Sbjct: 492  EFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGEET 551

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   + +II   +D             + +     ++LL+   +   G+N+GV P    
Sbjct: 552  LDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611

Query: 660  KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI--- 708
                 S   +  L         +A+  IG+            +  L  +    +      
Sbjct: 612  DKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671

Query: 709  --------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-------- 746
                              S +L    +L   +    ++ +       T +L         
Sbjct: 672  SESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYTL 731

Query: 747  YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778
             +     Y                             +      L  +    S S +++ 
Sbjct: 732  SSVWWDAYNSYFENEKESTMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRMEKF 791

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829
             +  +  YA+  LKL+   HF+      D G +FH  +  +  +    N           
Sbjct: 792  FSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLKEEEC 849

Query: 830  -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885
             ++  L    +    + E L         ++   +I      + +E+   S+   + + +
Sbjct: 850  KQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909

Query: 886  PAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQK 931
               +  +   +           L G  DRID+ +      + I DYK+  +         
Sbjct: 910  DFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEVYY 969

Query: 932  LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  Q+      +   +   I    + A + Y  +  ++            + +      
Sbjct: 970  GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDGAIAKELQKSSK 1029

Query: 991  LKNLI 995
            +K LI
Sbjct: 1030 MKGLI 1034


>gi|291525356|emb|CBK90943.1| ATP-dependent nuclease, subunit B [Eubacterium rectale DSM 17629]
          Length = 1156

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 123/1053 (11%), Positives = 294/1053 (27%), Gaps = 175/1053 (16%)

Query: 48   TIYVP------TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
             + VP      T+R       + ++++  K+ +   + S   +    F    + +  +  
Sbjct: 35   LVIVPEQFTMQTQR-------QLVDLSENKAIMNIDVLSFKRLAYRVFDELGITNLTV-- 85

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             +    + L L +L     +KL  I ++L     +S              +  ++  +  
Sbjct: 86   -LEETGKNLVLRKLAAQEADKLGVIGRNLNRIGYIS-------------EVKSLLSELVQ 131

Query: 162  EEKKWEDL-HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 E+L   + +             + +  + + + + +   +      + ++   AE
Sbjct: 132  YNISPEELGRYIASGMLSDTLSDKLKDVLVLYEAFEKFMQDKYIT--AEEILNVLSNVAE 189

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                     I     TG  P   +L+  +        V   +DC     I+ +   +   
Sbjct: 190  ESAILRNSVIAFDEFTGFTPIQNQLIKKLFVISKKIYVTLTIDC--REDIFKSRGMQELF 247

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                             K L  +            + ++ Y  +     SF         
Sbjct: 248  DMPK----------RTVKSLTEMAAFYGIEVEEPIILDKNYRLAENEELSF--------M 289

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRN 397
               +   +  + +K    + +    + ++E   IA  +   +       +  A++T D N
Sbjct: 290  EQQLFRKRRCSFKKAPKHIHIDCLRDPKQELTKIARRINELVRNENLRYRDIAIVTGDVN 349

Query: 398  LAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            +    V+    ++ I   I A   +        + S+ +   +     A+   ++   ++
Sbjct: 350  IYAGYVREIFDKYNIPYFIDATQEILFHPFIEFIRSIPDIAAQNFSADAVFRFLRCGFSE 409

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                E  +                    +    +     +   K+              D
Sbjct: 410  LLDSEIDVLENYVLAC-----------GVRGKSAWDKKWVRLPKHKAGY----------D 448

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-----DWTKLTVTCL--QNVCLDEH 569
             EL     ++I++ + P+    ++K ST  +  ++         +       +   LD  
Sbjct: 449  IELLNQSREYIMELLKPVYQVFSDKKSTVKDYVLAIYKLIVLLDIPDKLAKKEQALLDAG 508

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
             +  +  + +  K +  LF K +        +A E+  I+   +D   V        T+ 
Sbjct: 509  DQTASKEYGQIYKIVMQLFEKYVAVLGDECMDAEEFTQILDAGLDAADVAVIPPGYDTVT 568

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQ 683
            I     +RL N   +   G+N+G+ PK   +   +S+  +  L          A +    
Sbjct: 569  IGDIERTRLTNIKVMFFAGVNDGIVPKAAGRGGIISQYEREALKELDIELAPGAREQAFI 628

Query: 684  AAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGT------DFFDNLKKR 734
                  +     +R L  + +           S  +  L  +         +  + L   
Sbjct: 629  QRFYLYLNMTKPSRELYISYTRLDSEKKAAQPSYLIGILKGMFPELVVTETEDVEQLLDI 688

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA----------------------------- 765
                      L         +        +A                             
Sbjct: 689  SSRQSALDYLLSNEVDDRWCEIAAAVMLYDASVSDAGDGNEVDDKEFTQKNSVERLINAR 748

Query: 766  -------------------QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                               +    S +  +Q     YA +    L+L      +      
Sbjct: 749  FEHYSKDPISRNVARSIYGRHMEGSITRFEQFARCAYAHFLNYGLRLTERE--ESGFTSL 806

Query: 807  DRGTLFHNIITELIKKRINKNTPE-------INHLMKQIIDSHFEKENLPPHIDIIW--- 856
            D G ++H  +    KK   ++T          + L  + I+   ++       D      
Sbjct: 807  DMGNIYHEALERYSKKLDRESTDWFSVTDAKRDELAMEAINEVIDEYAGFGIFDTAESQH 866

Query: 857  -----RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE---SIGIHLTGFADRID-L 907
                 + +F +    +    +  + S            +++    + + + G  DR D  
Sbjct: 867  SISHMKAVFKQTV--WALTTQIRRGSFVPERFEFSFYESLDMANDVTVDIKGRVDRTDTY 924

Query: 908  LKSGFVD--ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC--RKVANLFY 962
               G +   + DYK+G               QL++   A+       +     +   + Y
Sbjct: 925  TDEGRLFVKVLDYKSGNTVFDLVKLYYGTQLQLAVYMDAVMEQKKEALKQVSVEPGGMLY 984

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              +              + S +E+++  LK L 
Sbjct: 985  YHIDDPVIDLKDVTPGTELSEEEINQMILKKLK 1017


>gi|304436812|ref|ZP_07396778.1| possible ATP-dependent deoxyribonuclease subunit B [Selenomonas sp.
            oral taxon 149 str. 67H29BP]
 gi|304370184|gb|EFM23843.1| possible ATP-dependent deoxyribonuclease subunit B [Selenomonas sp.
            oral taxon 149 str. 67H29BP]
          Length = 1198

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 115/1008 (11%), Positives = 267/1008 (26%), Gaps = 146/1008 (14%)

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                     L       P +S+I R + L  ++L    +L    + ++            
Sbjct: 71   FRRLARQVLLETGGEHLPRISDIGRRILLKDILLQHSRELSVFQRSVHKR---------- 120

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                  + L   I  ++ +    + L    +   G    L+A   ++A+           
Sbjct: 121  ---GFTEVLGHTIAELKRDRLSSDHLRQAADVSTGEHARLSAKLTELATIMDELAARMEG 177

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
              +    ++  + A+           + + G     P    +   +    +   V   +D
Sbjct: 178  RLTDHTDRMERLAAQLIDAPFLRGAELWVDGFDFFNPQELAVFRALFRVVDTVHVSLTMD 237

Query: 264  -CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
                 T ++  + E   +      +Y T                    +           
Sbjct: 238  GRDDGTHVFTNLPENIYDTGLFARSYQTMHL---------------LQQIFTEEQPSAQI 282

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
               ++                 L             + ++EA N R E  + A  +    
Sbjct: 283  GIRLMPVQHRARTEGLRLLEAQLFGHGHITPAKDDSIRIVEAANPRLEVETAAADILRLA 342

Query: 383  DENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             +N    ++ A++  D +L   +        GI   +    P +    + +L ++    +
Sbjct: 343  RDNGYRYREIAVLMRDVDLYGDLLSLAFADCGIPFYLDVKRPSAHHPLAELLRAVAQMTW 402

Query: 439  KLNDFMAIATLVKH---PLAKFGFPE------KYLSRAKNALELVALRGNKNSYDIMDLK 489
            +   +  +   ++    PL      E           A + LE   L     S       
Sbjct: 403  RGWAYETVFRALRTGFFPLLGTEEDEDAPPLCADWQEAVDRLENYCLAYGIRSESQWTAT 462

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL- 548
                           +   +      +++    L   I + ++ L  +     ST     
Sbjct: 463  EPWDFVQRR-VTEHELHLDEEEERLREEQWLDHLRRRIAEPLSLLTGHLRRHESTARART 521

Query: 549  -SISDWTKLTV-----TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
             ++ D+                   E R        +   +  +LF +++E       ++
Sbjct: 522  KALYDFLDELCVPQTLRLWSETADREGRLADAAAHRQIWSSCMALFDQLVEVRGDDPLSS 581

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             ++ ++++  +D  ++         + +    ++ +     + + G N G+ P+    + 
Sbjct: 582  RDYEELLSDGLDAMSIALIPPGLDHVTVASFDQNSIAGARAVFVIGANAGIMPRAGTTSG 641

Query: 663  FLSRVM----------------QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE- 705
              S                    +    +T + ++ +            +L  + +L   
Sbjct: 642  VFSDTELLFIGESLQTAGADSGHTVFGGRTQQSFLERYQLYRGFTEARDYLWVSYALSSV 701

Query: 706  NNIPTIASRWLQRLL-----------VLGGTDFFDNLKKRGQCYLDWTRKLDY------- 747
            +      S  + RL             L G D    L          T  L         
Sbjct: 702  DGSTLAPSPLIARLRRISSSFFSIPLALAGRDDPLLLSAPYPALSHLTAALREKKERGEM 761

Query: 748  -------------------------------TTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
                                             +               +  + S + ++
Sbjct: 762  PAMWGDVYNWMLQDAVMQPLLRRMLHGLFLPPREVSIPAPVAARLFTRDRRLSGSTTRLE 821

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT---ELIKKRINKNTPEINH 833
                 P+  +A   L+L      + +    D GTL H I+    E ++     +      
Sbjct: 822  TFRQCPFRHFAMYGLRLQQRD--RYEFQSNDFGTLLHGILRGYGEWVRSAYGNDWCAALA 879

Query: 834  LMKQIIDSHFEKENLPPH-----IDIIWRHLFHKI---SHSFLEHE--EKIQSSIEKIFV 883
               + I+   ++     H         +RH   +I   +   ++H       SS      
Sbjct: 880  EAPEKIEELLQELIPQVHSTVLMSRASYRHRIERIRCTAQQTIQHLTSWAAASSFHPYGF 939

Query: 884  NIPAKMA-----------IESIGIHLTGFADRIDLLKSGF-VDITDYKTGDNP-KKETAQ 930
             I                 + + + L G  DR+D++       + DYKTG         +
Sbjct: 940  EISFGRRNDGVRLADFPLADGMTLSLRGQIDRLDVMDHHAYYLVLDYKTGATSLLLPEIR 999

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
              +  QL L    ++  S         A + Y  +K       +  D+
Sbjct: 1000 HGLKMQLLLYLFVVR--SILDTGEAFPAGMLYAPVKNPIVPCNVRLDE 1045


>gi|315658705|ref|ZP_07911575.1| ATP-dependent nuclease subunit B [Staphylococcus lugdunensis
           M23590]
 gi|315496336|gb|EFU84661.1| ATP-dependent nuclease subunit B [Staphylococcus lugdunensis
           M23590]
          Length = 1155

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 114/930 (12%), Positives = 248/930 (26%), Gaps = 139/930 (14%)

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKY 194
           L L  S A     ++ LA+ I   +      EDL +L  +           + + +    
Sbjct: 107 LKLYHSQAKYYGFSEKLAEQIQDFKKYVVTPEDLQSLVTQHSLPTRMQHKLEDIALIYNA 166

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           +  ++           ++              +  I I G          ++  +  +  
Sbjct: 167 FERQIA--GRYITSEDKLKQFINVMPQSQWLKRAEIYIDGFHNFSSLEYDIIKHLVKYAK 224

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
              VL   D              S     S           L ++   L+I         
Sbjct: 225 KVTVLLTTD--------GNTDPFSLFRKPSEVLQH------LEEIAAELNITLNRKHFNQ 270

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                 +    +  +          +                  + ++EA + REE   +
Sbjct: 271 QHRFTNHDLVHLEQEFDALQINPIQQQ---------------GHIQILEAASIREEVNEV 315

Query: 375 AIALRMSLDEN---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
           A  +  +  E     +  A++  D + A  +   L +F I   I     ++      ++ 
Sbjct: 316 ARQIIKATREQHLRYQDIAILYRDESYAYLLASILPQFDIPFHIDIKKSMTHHPIMEMVR 375

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
           SL+  +       A+  L K  +  +           + LE   L          D    
Sbjct: 376 SLIEVVRTNWSTDAMLRLFKTDILTYQIKNSSYL--IDLLENFVLERGITGKRWFDESRF 433

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH----ILQCITPLVTYKTNKNSTCGN 547
            ++         H    + + + E        V H      Q +    T      +   +
Sbjct: 434 QIEHFQKMGRKEHQLTPEEQETFEKVVQLKDDVVHKILYFEQAMNDAHTVIDYATAFYES 493

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
           +   +     +T    +  D HR       ++    +  +   ++      + +   + +
Sbjct: 494 MEYFELPNQLMTIRDTLEAD-HRYEEAEEIDQIWNGIIQILDDLVTVFGTTEMSLQRFNE 552

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
           ++   ++        +    + I     +++ N   + + G+N+GV P+  A    +S  
Sbjct: 553 VLDIGLEQLEFAMIPQTLDQVSIGSMDLAKVDNKAKVFMVGMNDGVIPQPIASTSLISDE 612

Query: 668 MQSDLNLKTAEK--------YIGQAAHDFEMANGT-RHLIYTRSLRENNI-PTIASRWLQ 717
            +     +T  +         + +A   +       + + ++ SL  N+      S +L 
Sbjct: 613 EKKFFETQTHIELSPTSDVLQMDEAFVCYIAMTRATQQVTFSYSLMGNSGDEKEISPFLS 672

Query: 718 RLLVL----------------------GGTDFFDNLKKRGQCYLD--------------- 740
           ++  L                       G     +L +  + +LD               
Sbjct: 673 QIKQLYTNMQIDNLNYVHAQQPLLLVEHGHQTKIHLFEALRAWLDDEIVADTWIDTYQVM 732

Query: 741 ------------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                           L Y         P             S S  +     P+  YA 
Sbjct: 733 RDDAQLNDGLDYLLTSLTYDNHTVQLSDPLAQQLYGKAIN-ASVSRFEGYQQCPFKHYAS 791

Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
             L+L+     K      D G +FH+++  +  +            +KQ+     E+   
Sbjct: 792 HGLRLNER--TKYQLQNFDLGDIFHSVLKYISDRVNGDFKHLNAKTIKQLTSEALEEILP 849

Query: 849 PPHIDII--------WRHLFHKISHSFLEHE--EKIQSSIEKIFVNIPAK---------- 888
               +++               I  + L     +   S  +        +          
Sbjct: 850 KVQFNLLNSTAYYRYLSQRIGAIIETTLGALKYQSSYSKFKPQRFETGFRRKPHQDDLMA 909

Query: 889 ---MAIESIGIHLTGFADRIDLL--KSGFVD-ITDYKTGDNPKK---ETAQKLIDPQLSL 939
                 + I I++ G  DRID           I DYK+     K   +     +  Q+  
Sbjct: 910 ESLQTTQGIPINIRGQIDRIDTYTEDDQSYVNIIDYKSSKESAKLDLKKVYYGLQMQMMT 969

Query: 940 EAAAL----KAGSFSQIDCRKVANLFYIRL 965
               +    +    S     K   L Y  +
Sbjct: 970 YMDIVLQNHERLGLSDT--VKPGGLLYFHV 997


>gi|255323798|ref|ZP_05364924.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum SK141]
 gi|255298978|gb|EET78269.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum SK141]
          Length = 1059

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 114/1041 (10%), Positives = 269/1041 (25%), Gaps = 167/1041 (16%)

Query: 46   SVTIYVPTKRAIQELRSEFIEIT--GKKSTILPIIKSLGDVVE------------EKFTA 91
             V     T++A Q+L           + S ++P     G+V E            + +  
Sbjct: 67   QVLGLTFTRKAAQQLEQRIRRQLIKLRDSGLIP---PGGEVAEALENIAPKVATYDSYAG 123

Query: 92   DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
            +L+  Y L  PV    R++  A    +  + + +    L  +  L+        +  +++
Sbjct: 124  ELVREYGLLVPVEPTARIITEAERYSLAYDVVRNYTGQLEDDRALATITET--LLKFSQD 181

Query: 152  LADIIDI---IETEEKKW-EDLHALKNEK--YGMWWLLAADFLK---------IASKYWT 196
            + + +     I    + +  D+  L   +     +     +++             +   
Sbjct: 182  IDNGLKDTSHIAEHARDFRADIDNLDKSQKNGPEYSQKLLEYIHTQERRVQYVPLLEALK 241

Query: 197  ERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
            +   E    +         R   +H             +++     +  A   L+ ++  
Sbjct: 242  KEQSERQVITFGEQMAVAARVARDHPVVGKQQSQRYKVVMLDEYQDTSYAQRVLLRSLFG 301

Query: 252  HPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                   V    D       W   T ++      +   +        +L           
Sbjct: 302  GDQEDLSVTAVGDPMQAIYGWRGATSENLTAFVEDFPVAPGTPAPKDQLTISWRNP---- 357

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                         S  +  +    +         ++       K   ++ L   D+E  E
Sbjct: 358  -------------SGALDLANSVAEGVFEGVERPVDELSAAPHKGEGEIQLAYFDSEARE 404

Query: 371  AISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
               +A  L+   D+ +     +A++      +  +   L + G+  +I     L      
Sbjct: 405  REFVAEYLKDQWDKREGDTFSAAVLVRINRHSAPIAAALDKAGVPNEIIGLGGLLWQPEI 464

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
              L ++   + +  D  A   ++  P+   G  +     ++      A          MD
Sbjct: 465  QDLVAIATMLVRPEDLPAAVRVLAGPICGLGISDIQALASRLRNLAGAREERLRWEPGMD 524

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
             +  +  ++                     +    L +        L   +         
Sbjct: 525  PEEYLRAQLEDVTAEEPDQRV------GLADALADLGERDRYTPQGLARMEEVSAKLRHL 578

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA-NAIEWI 606
             + S    L         L   R          G T    F+ I+           +++ 
Sbjct: 579  RTYSLSKPLVDIFADIEALFNIRTEVLARGSAGGATHLDKFADIVAGFHGDSLYALLDYF 638

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT-----AKN 661
             +     DG  +      +  + I+   +++ L ++ + +   +   +           +
Sbjct: 639  ALALEKEDGLDLGEVPAATDRVQIMTAHKAKGLEWEHVCVVHADSSSYSAKAETFLSRID 698

Query: 662  PFLSRVMQSDLNLKTAEK-----------------YIGQAAHDFEMANGTRHLIYT---- 700
                     ++     ++                    ++A  F +A        T    
Sbjct: 699  KVPGDDDYIEVPEDAEKRSDFHNACEEFKKADSAIKAEESARLFYVALTRTESTLTVTGS 758

Query: 701  -RSLRENNIPTIASRWLQRL---------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
              +            +L+RL               +  ++       +       +    
Sbjct: 759  GTNNLNGKNKKAPYEYLERLKEQFPQYVVEWSVPDEPSEDDYGESAQFPALQASPEAVAG 818

Query: 751  QPHYKRPKPFPPLEAQ------------------------------PRTYSFSEIKQLIN 780
                       P  ++                              P   + S++  L  
Sbjct: 819  ADMVLEAMEELPDLSRGETFELWEQEAGALIEEYKALQQPVVDVELPSELTASDMVALRA 878

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
            DP    ARR  +               RGT FH  + +           E+         
Sbjct: 879  DPLQF-ARRQRRPVPFKPNSY----AKRGTAFHAWLEDRFGSPALLGEEEL--------- 924

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
                     P ID        ++  +FL  E    +  +   V  P ++ I      + G
Sbjct: 925  ---------PGIDEPEDFDLEELKEAFLNSEW---AERQPEHVEAPFEITIGEA--VVRG 970

Query: 901  FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
              D +  L+ G   + D+KTG  P+ E        QL++ A A +      I   +    
Sbjct: 971  RMDAVFRLEDGTWMVVDWKTGRPPQGEAMDAAKI-QLAVYAEAWRR-----IHGGEKIRA 1024

Query: 961  FYIRLKQKFKIDCITNDKKKY 981
             +  +   +  +     + + 
Sbjct: 1025 AFYYVHDGYTFEPARLPRGEE 1045


>gi|319891942|ref|YP_004148817.1| ATP-dependent nuclease, subunit B [Staphylococcus pseudintermedius
            HKU10-03]
 gi|317161638|gb|ADV05181.1| ATP-dependent nuclease, subunit B [Staphylococcus pseudintermedius
            HKU10-03]
          Length = 1154

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 111/993 (11%), Positives = 272/993 (27%), Gaps = 145/993 (14%)

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL-AADFLKI 190
             ++ L L  S    +  +  + + I   E      E +  +  + +           + +
Sbjct: 102  AQTELKLYRSQVGYMGFSTKVREQIQDFEKYAVTPEMVSDMATDAHLEPRTRHKLHDIGL 161

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
              +    R+     ++       +            +  I I G         +L+  + 
Sbjct: 162  IYEKLQARMSSEYITAEAMMNRLV--TLIPQSKWLKQAEIYIDGFHNFSTQEYQLIEALV 219

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
             H          +                                  K  + L    E  
Sbjct: 220  KHVKSVTFALTTNGDQDA------------------------LSMFRKPSESLRHFEEMA 255

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
             R+G        R    ++      +           +  +       + ++EA   REE
Sbjct: 256  HRVGQPL----ERLYFYTQHRFKAPSLTTLEQQFDALQPESHHTADEGIRILEAPTTREE 311

Query: 371  AISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
               +A A+   + E     +  A++  D +    +   L ++ I  +I     ++     
Sbjct: 312  VNEVARAILRDVREKQYRYQDIAILYRDPSYVYLLDAILPQYDIPYNIDVKKSMTHHPIM 371

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             +L +L+  +     F  +  L+K  +     P+       + LE  A+    +    +D
Sbjct: 372  EMLRALIEVLQTEWQFEPLMRLLKTNVLTQMMPDSAYL--VDLLENFAIERGIHGKRWLD 429

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
             +   L++        + P      +EE+      ++D   +    L+ ++         
Sbjct: 430  PQYFELNQFRKMGIRPNDPL-----TEEETATFERVIDLKTKVFNQLLNFEEKLAQGSNA 484

Query: 548  LSIS----------DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             + +          +     +T    +   + +       ++    L  +   ++     
Sbjct: 485  KAFATYFYEAMEGFELPNQLMTQRDMLDE-QGQHEAAEEIDQIWNGLIRVLDDVVTVFGD 543

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                   +++++   ++        +    + I     +++ N   + + G+N+GV P+ 
Sbjct: 544  RDMTLTRFLEVLDVGLNELEFSMIPQTLDQVTIGTMDLAKVDNKKHVYMIGMNDGVMPQA 603

Query: 658  TAKNPFLSRVMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSLREN-N 707
               +  +S   +             T++      A    F M   T  + ++ SL +   
Sbjct: 604  INGSGLISDNEKKAFETYAGVQLSPTSDILQMDEAFVCYFAMTRATETVTFSYSLMDASG 663

Query: 708  IPTIASRWLQRL----LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
                 S +L  +      L          +     ++   +      +            
Sbjct: 664  AEREKSPFLNDIRQMFRNLDIIQLTHQHARDTLSLIEHPHQTKVHLFEAFKTWLDEGLIS 723

Query: 764  EAQPRTYSFSEIKQLIND------------------------------------------ 781
            +    TY+       +ND                                          
Sbjct: 724  DTWFTTYAVMAQYPQLNDGLTHLKSALTYNNDTVQLDGELTTQLYGKAIHASVSRFEGYQ 783

Query: 782  --PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
              P+  Y    L+L+     K      D GT+FH+++  + +K   +        + Q+ 
Sbjct: 784  NCPFKHYTSHGLRLNER--TKYQLQNFDLGTIFHDVLKYIAEKVEGRFNQLTELQIAQLT 841

Query: 840  DSHFEKENLPPHIDII--------WRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK- 888
            +   E        +++               I  +  +    +   S  + I      + 
Sbjct: 842  NDALETLLPHVQFNLLNSTSYYRYLSQRIGAIVQATLYAMKYQTSHSQFKPIAFEKSFRK 901

Query: 889  -------------MAIESIGIHLTGFADRIDLL--KSGFVD-ITDYKTGDNPKKET---A 929
                            + + I++ G  DRID    ++     I DYK+  +         
Sbjct: 902  SPKDASELKAETLYTSQGMPIYIRGQIDRIDTYQKENKSFVNIIDYKSSSSSASLDLVKV 961

Query: 930  QKLIDPQLSLEAAALKAGS--FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
               +  Q+                ++  K     Y+ + Q        +D +    DE  
Sbjct: 962  YYGLQMQMMTYMDIALQNKERLGLVEEVKPGGFLYMYVHQFRDEKRAWSDIEVAKLDEAF 1021

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
             KS + L  ++    +  + +   L    KS+I
Sbjct: 1022 LKSYQ-LQGLLNNDVDVLEAYDERLTAGFKSDI 1053


>gi|47097166|ref|ZP_00234732.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes str. 1/2a
            F6854]
 gi|254899031|ref|ZP_05258955.1| hypothetical protein LmonJ_04444 [Listeria monocytogenes J0161]
 gi|254937155|ref|ZP_05268852.1| ATP-dependent nuclease [Listeria monocytogenes F6900]
 gi|47014471|gb|EAL05438.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes str. 1/2a
            F6854]
 gi|258609759|gb|EEW22367.1| ATP-dependent nuclease [Listeria monocytogenes F6900]
          Length = 1157

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 123/965 (12%), Positives = 276/965 (28%), Gaps = 124/965 (12%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L  +  L +     +      +LA++   ++ EE   ED+                  
Sbjct: 97   AALDQKDKLKIFSRATSRKGFYSDLANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKVHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + +  + + E L   +        + L+  +        +  I+I G T        ++ 
Sbjct: 156  ISLIYQKYEELLA--DKFLENEDYLRLLAEKIADSDYLNQTEIVIDGFTSFSKQELTVIG 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   +   L+      I + + E S    S+         Y+L +L      + 
Sbjct: 214  ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K               ++ ++        +N                ++ + +A+N 
Sbjct: 265  EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311

Query: 368  REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   IA  +R         +  A++T +  +     +  +  + I   I     ++  
Sbjct: 312  RAEIEGIAREIRQLALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         +  L  R  + LE   L     + 
Sbjct: 372  PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431

Query: 484  DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
               + +   + R     +   +P    +  +     E+  L+V+ +      L   KT  
Sbjct: 432  WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 491

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599
                      +               E +    L    E+   ++S L  + +E      
Sbjct: 492  EFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISVLLDEFVEVLGEET 551

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   + +II   +D             + +     ++LL+   +   G+N+GV P    
Sbjct: 552  LDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611

Query: 660  KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI--- 708
                 S   +  L         +A+  IG+            +  L  +    +      
Sbjct: 612  DKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671

Query: 709  --------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-------- 746
                              S +L    +L   +    ++ +       T +L         
Sbjct: 672  SESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYTL 731

Query: 747  YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778
             +     Y                             +      L  +    S S +++ 
Sbjct: 732  SSVWWDAYNSYFENEKESIMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRMEKF 791

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829
             +  +  YA+  LKL+   HF+      D G +FH  +  +  +    N           
Sbjct: 792  FSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLTEEEC 849

Query: 830  -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885
             ++  L    +    + E L         ++   +I      + +E+   S+   + + +
Sbjct: 850  KQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909

Query: 886  PAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQK 931
               +  +   +           L G  DRID+ +      + I DYK+  +         
Sbjct: 910  DFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEVYY 969

Query: 932  LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  Q+      +   +   I    + A + Y  +  ++         +  + +      
Sbjct: 970  GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKSSK 1029

Query: 991  LKNLI 995
            +K LI
Sbjct: 1030 MKGLI 1034


>gi|212218646|ref|YP_002305433.1| ATP-dependent nuclease subunit B [Coxiella burnetii CbuK_Q154]
 gi|212012908|gb|ACJ20288.1| ATP-dependent nuclease subunit B [Coxiella burnetii CbuK_Q154]
          Length = 872

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 105/696 (15%), Positives = 214/696 (30%), Gaps = 76/696 (10%)

Query: 362  IEADNEREEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGI----NIDIS 416
            +   N   E  ++A         E  +K   +  D    R   L L         + +IS
Sbjct: 226  VNFQNSEMEIQTMARWAYAQWEKEPNQKIGCVMPDLTQHRTQVLRLFTEIFGSSEHFNIS 285

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
                L+    + I    L       D M + T+ +         +               
Sbjct: 286  VAESLTQIPLTQIALKCLELDPFKIDIMQLGTVFRSSYINSRTVDVC------------- 332

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV--LLVDHILQCITPL 534
                       L + +  ++    +    P +      + +       L       +   
Sbjct: 333  -----------LAAQLDVKLRESAHWQANPAFILYHLHQLQPHFQSTTLTTRCQTWL--- 378

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                     +   L  S W +     L  +     R L +  +++  +  + L       
Sbjct: 379  ------SKRSSTRLFPSAWAQQFSEELTAIGWPGQRSLDSKEYQQWKRWENLLHEYAALD 432

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                +      + ++ +L      +P   ++S++ ILG LE+    FD L + GLN+  W
Sbjct: 433  TFTQQQTRKNALQLLRQLAHHTLFQPMSSQNSSIQILGLLETTGHYFDKLWIAGLNDKKW 492

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIPTI 711
            P   + NPFL   +Q    +  A                      +I +  L+E +I   
Sbjct: 493  PPVASPNPFLPLSLQRRCQMPHASAKREMEYTLQLQNRLLKSAPAIILSTPLQEGDIQLS 552

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
             S  ++    +   D       +   +      L         +  +     E +P +  
Sbjct: 553  TSPLIRHFPEINNEDL------QLPAWQPLKAHLFKIKMLETIEDAQAPALQENEPMSGG 606

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE- 830
               ++     P+  +A+  L+   +       +  +RG   H  +  + KK  +  T   
Sbjct: 607  SGLLQSQSICPFQAFAKVRLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNS 666

Query: 831  -INHLMKQIIDSHF-----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
              +  ++ IID        +++ + P      +    ++  ++L  E+K     E     
Sbjct: 667  SSDGELENIIDETITHLISQEKLIQPLFLNTEKKRLKQLIKNWLLLEKKR-PPFEVSQRE 725

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLE-A 941
                + I    + L    DRID        I DYKTG     +     +L   QL L  A
Sbjct: 726  TKRHIKI--GPLRLEVRIDRID----NNCFIIDYKTGGQNSVDDWFGDRLKSIQLPLYCA 779

Query: 942  AALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
             A +     +++++  +K+     I   +KF            + +EL  +    L  + 
Sbjct: 780  YAAREATGIAYAEVRSQKMTFKGLISANEKFNSFSEVK-PSPLAWNELIRRWKMQLYHLA 838

Query: 999  TLLQNGEQPFISHLRL--SEKSNIQSEYDHLARVAE 1032
                +G+    + +    S+        + L R+ E
Sbjct: 839  VDFSSGK----ADVDPLDSKTVCKVCHLNSLCRIGE 870


>gi|291527057|emb|CBK92643.1| ATP-dependent nuclease, subunit B [Eubacterium rectale M104/1]
          Length = 1156

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 123/1053 (11%), Positives = 294/1053 (27%), Gaps = 175/1053 (16%)

Query: 48   TIYVP------TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
             + VP      T+R       + ++++  K+ +   + S   +    F    + +  +  
Sbjct: 35   LVIVPEQFTMQTQR-------QLVDLSENKAIMNIDVLSFKRLAYRVFDELGITNLTV-- 85

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             +    + L L +L     +KL  I ++L     +S              +  ++  +  
Sbjct: 86   -LEETGKNLVLRKLAAQEADKLGVIGRNLNRIGYIS-------------EVKSLLSELVQ 131

Query: 162  EEKKWEDL-HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 E+L   + + +           + +  + + + + +   +      + ++   AE
Sbjct: 132  YNISPEELGRYIASGRLSDTLSDKLKDVLVLYEAFEKFMQDKYIT--AEEILNVLSNVAE 189

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                     I     TG  P   +L+  +        V   +DC     I+ +   +   
Sbjct: 190  ESAILRNSVIAFDEFTGFTPIQNQLIKKLFVISKKIYVTLTIDC--REDIFKSRGMQELF 247

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                             K L  +            + ++ Y  +     SF         
Sbjct: 248  DMPK----------RTVKSLTEMAAFYGIEVEEPIILDKNYRLAENEELSF--------M 289

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRN 397
                   +  + +K    + +    + ++E   IA  +   +       +  A++T D N
Sbjct: 290  EQQFFRKRRCSFKKVPKHIHIDCLRDPKQELTKIARRINELVRNENLRYRDIAIVTGDVN 349

Query: 398  LAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            +    V+    ++ I   I A   +        + S+ +   +     A+   ++   ++
Sbjct: 350  IYAGYVREIFDKYNIPYFIDATQEILFHPFIEFIRSIPDIAAQNFSADAVFRFLRCGFSE 409

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                E  +                    +    +     +   K+              D
Sbjct: 410  LLDSEIDVLENYVLAC-----------GVRGKSAWDKKWVRLPKHKAGY----------D 448

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-----DWTKLTVTCL--QNVCLDEH 569
             EL     ++I++ + P+    ++K ST  +  ++         +       +   LD  
Sbjct: 449  IELLNQSREYIMELLKPVYQVFSDKKSTVKDYVLAIYKLIVLLDIPDKLAKKEQALLDAG 508

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
             +  +  + +  K +  LF K +        +A E+  I+   +D   V        T+ 
Sbjct: 509  DQTASKEYGQIYKIVMQLFEKYVAVLGDECMDAEEFTQILDAGLDAADVAVIPPGYDTVT 568

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQ 683
            I     +RL N   +   G+N+G+ PK   +   +S+  +  L          A +    
Sbjct: 569  IGDIERTRLTNIKVMFFAGVNDGIVPKAAGRGGIISQYEREALKELDIELAPGAREQAFI 628

Query: 684  AAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGT------DFFDNLKKR 734
                  +     +R L  + +           S  +  L  +         +  + L   
Sbjct: 629  QRFYLYLNMTKPSRELYISYTRLDSEKKAAQPSYLIGILKGMFPELVVTETEDVEQLLDI 688

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA----------------------------- 765
                      L         +        +A                             
Sbjct: 689  SSRQSALDYLLSNEVDDRWCEIAAAVMLYDASVSDAGDGNEVDDKEFTQKNSVERLINAR 748

Query: 766  -------------------QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                               +    S +  +Q     YA +    L+L      +      
Sbjct: 749  FEHYSKDPISRNVARSIYGRHMEGSITRFEQFARCAYAHFLNYGLRLTERE--ESGFTSL 806

Query: 807  DRGTLFHNIITELIKKRINKNTPE-------INHLMKQIIDSHFEKENLPPHIDIIW--- 856
            D G ++H  +    KK   ++T          + L  + I+   ++       D      
Sbjct: 807  DMGNIYHEALERYSKKLDRESTDWFSVTDAKRDELAMEAINEVIDEYAGFGIFDTAESQH 866

Query: 857  -----RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE---SIGIHLTGFADRID-L 907
                 + +F +    +    +  + S            +++    + + + G  DR D  
Sbjct: 867  SISHMKAVFKQTV--WALTTQIRRGSFVPERFEFSFYESLDMANDVTVDIKGRVDRTDTY 924

Query: 908  LKSGFVD--ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC--RKVANLFY 962
               G +   + DYK+G               QL++   A+       +     +   + Y
Sbjct: 925  TDEGRLFVKVLDYKSGNTVFDLVKLYYGTQLQLAVYMDAVMEQKKEALKQVSVEPGGMLY 984

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              +              + S +E+++  LK L 
Sbjct: 985  YHIDDPVIDLKDVTPGTELSEEEINQMILKKLK 1017


>gi|117924279|ref|YP_864896.1| DNA helicase/exodeoxyribonuclease V, subunit B [Magnetococcus sp.
            MC-1]
 gi|117608035|gb|ABK43490.1| DNA helicase/exodeoxyribonuclease V, subunit B [Magnetococcus sp.
            MC-1]
          Length = 916

 Score =  185 bits (469), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 94/704 (13%), Positives = 202/704 (28%), Gaps = 80/704 (11%)

Query: 364  ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL--------------ELTRF 409
              ++ +E +++A  +R  L+   +   ++  +    +                       
Sbjct: 241  FADQEQELLAMARWVRQQLEAGVRNIGVVAPNLPEIKSGLARTLAAVLTPGFDRPHSPPQ 300

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
             + ++IS+G  L+ T   +    LL+ + +     A A L++ P    G   +    A  
Sbjct: 301  PLPVNISSGSALAHTPVVADALLLLHFLQEPLLPAAWAALLRSPYFSGGEKGRDSRGAL- 359

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                        +     L    + R+      +    ++        EL   L      
Sbjct: 360  -------EAKLRALGCFSLNVTQMCRLLETHKRSENSWYERINRLAQLELDKAL------ 406

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                                +  W       L+ +      +  +    +       L +
Sbjct: 407  -------------------PLGRWAARVSRWLELMGWPGTDRALDSREYQAVSAWRDLLT 447

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            +         A   E    + + +            + + ++G LES    FD L L  +
Sbjct: 448  QWAALEHTAPALPWESALGLLQGMALRRDFQPDGGEAPVRVMGVLESAGERFDALWLLDM 507

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMAN-GTRHLIYTRSLREN 706
             +  WP     NPFL   +Q    +   +AE+ +  A    +      + ++ +    + 
Sbjct: 508  RDEQWPPAPMPNPFLPLALQRQWGMPRASAERELTFARQITQRLRQAAKTVVVSWCRSDG 567

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
            +   + S     L          +                +         P   PP    
Sbjct: 568  DRDFLISPLWSDLP---LAPVTASPPDYPLDAQLIAAAGRWQAYDGAASIPLTCPPQSV- 623

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
                  + +K   + P+  +A   L+   +       D   RGTL H ++ +  K   ++
Sbjct: 624  -LPGGAALVKNQASCPFKAFALHRLQAKGLEVTVPGADDRRRGTLAHVMLEKFWKTVQSE 682

Query: 827  NTPEINHLMKQIIDSHFEKENLPP------HIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
                   + ++                       + +    ++   +++ E         
Sbjct: 683  ANLRQARIAQRQQWVAQAVAAALQKWTVQGDFAGLEQQRLQQLMARWIDVELARAPGFVV 742

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-ETAQKLIDPQLSL 939
                 P K+AI    + L    DR+D L  G   + DYK+G    K     ++ DPQL L
Sbjct: 743  EVAEDPQKLAIAGATLEL--RLDRLDRLADGRHLLIDYKSGQPTTKDWQGPRMSDPQLPL 800

Query: 940  EAAALKAGSFSQIDCRKVANLF-------YIRLKQKFKI-------DCITNDKKKYSADE 985
                  A     +     A+L        +I + ++ ++         +  + +  S   
Sbjct: 801  YTLLSHAQGALHVAGLAFASLKANKGDKPWIGMGEEAELLPGLKAWKPVGEESQAQSWPA 860

Query: 986  LSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
               +  + L E+V     G           +K     +   L R
Sbjct: 861  QLSEWRQWLTELVEAFMAGSA--AVDPHEGDKGCGYCDLSPLCR 902



 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/608 (8%), Positives = 137/608 (22%), Gaps = 47/608 (7%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTIL---PIIKSLGDVVEEKFTADLLLSYNLNP 101
           A   +    +R  + LR    E    +  I    P + + G  +E  +    + +  +  
Sbjct: 30  AGAVVVTVNRRLARWLRHRHGEAKMAQGLIAWATPDLLAWGSWLERCWR-QAVATAAVQG 88

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
               + RL+   +  LIW   +          SP         A  L          +  
Sbjct: 89  KARELPRLMNGEQERLIWSAVVRQSEVGQSLLSPHGAAEGARQAWVL----------LAQ 138

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                E L      +           L+   + + +RL              L+   A  
Sbjct: 139 WGVTQELLRQQPEPE-------TQVLLQWI-EAYQQRLQREGLLDAQQLSSQLLSRAACW 190

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA------------ 269
                   +I+AG     P     +  +A      +     +   P +            
Sbjct: 191 Q---PPRQLIVAGFDDVSPQMQHFLQVLAGEHGVMVNQWLPEPLQPHSMQRWGFADQEQE 247

Query: 270 -------IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
                  +   +     NI                 L   L    +              
Sbjct: 248 LLAMARWVRQQLEAGVRNIGVVAPNLPEIKSGLARTLAAVLTPGFDRPHSPPQPLPVNIS 307

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
               ++ + +  D   + +                       +  R+   ++   LR   
Sbjct: 308 SGSALAHTPVVADALLLLHFLQEPLLPAAWAALLRSPYFSGGEKGRDSRGALEAKLRALG 367

Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
             +   + +        R       R      +     L     ++ ++  L  +     
Sbjct: 368 CFSLNVTQMCRLLETHKRSENSWYERINRLAQLELDKALPLGRWAARVSRWLELMGWPGT 427

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             A+ +     ++ +       +  ++    +           M L+             
Sbjct: 428 DRALDSREYQAVSAWRDLLTQWAALEHTAPALPWESALGLLQGMALRRDFQPDGGEAPVR 487

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQC--ITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                  +    +   L  +  +         P +     +       S           
Sbjct: 488 VMGVLESAGERFDALWLLDMRDEQWPPAPMPNPFLPLALQRQWGMPRASAERELTFARQI 547

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
            Q +       + +    +  +             + + A+  ++  +  +LI       
Sbjct: 548 TQRLRQAAKTVVVSWCRSDGDRDFLISPLWSDLPLAPVTASPPDYP-LDAQLIAAAGRWQ 606

Query: 621 KIEKSSTL 628
             + ++++
Sbjct: 607 AYDGAASI 614


>gi|315304459|ref|ZP_07874742.1| ATP-dependent nuclease subunit B [Listeria ivanovii FSL F6-596]
 gi|313627173|gb|EFR96023.1| ATP-dependent nuclease subunit B [Listeria ivanovii FSL F6-596]
          Length = 1157

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 127/967 (13%), Positives = 283/967 (29%), Gaps = 139/967 (14%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L  +  L +     +       LA++   ++ EE    DL                  
Sbjct: 97   AALDKKEELKVFSRATSRKGFYSELANLFKEMKQEEISINDLEESART-LPTSVTNKVHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + +  + + E L            + L+  +           III G          ++ 
Sbjct: 156  ISLIYQKYEELLT--GKFLENEDYLRLLAEKITESDYLNDTEIIIDGFNSFSKQELTVIE 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   V   L+      I + + E S   TS+          +L ++    +I  
Sbjct: 214  RLMQKCDKVTVSLTLNV---PNIQDGLEEYSMFKTSTEIYL------ALLEIAKLNNIDI 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K L             ++ ++     +                   +++++ +A+N 
Sbjct: 265  EEGKLLTENKRAKAASLAFLTNTWGQNKFAAFEGE-------------ATNLSIHQANNR 311

Query: 368  REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   IA  +R       + K  A++T +  +     +  +  + I I I     ++  
Sbjct: 312  RAEIEGIAREIRKLTLNGYSYKDIAILTRNLGDYDVLAETVMEAYDIPIFIDKKREMAKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK-YLSRAKNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         E   + R  + LE   L     + 
Sbjct: 372  PFVEFIRSSLDAIQFNWKYEPIFQAVKTEFFFDIMEEAADMRRKSDILENYVLENGIQNK 431

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
                 +   + R     +   +P      ++E+     ++ +   + + PL T + N + 
Sbjct: 432  WKWQKEGDWIYRKIRGLSTNVLPQ-----TDEELSTQNVINEMRNRIVIPLSTLEMNLSK 486

Query: 544  TCGNLSISDWT---------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                   +               +   + V  D          E+   ++S+L  + +E 
Sbjct: 487  ASTGQEFALALYHYIEQVQAVEHLESWRRVAEDNGYLELAREHEQAWNSISALLDEFVEV 546

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                  +   +I+I+   +D             + +     ++LL    +   G+N+GV 
Sbjct: 547  LGEESLDLTSFIEIVVTGLDALEFSLLPPALDQVVLSDMENAKLLEMKVIFAIGMNDGVM 606

Query: 655  PKNTAKNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLREN 706
            P        LS   +  L         +A+  IG+            +  L  +    + 
Sbjct: 607  PLRQKDKGILSDQDRDFLREQNSNLKASAKNNIGEEDLLAYKIVSLPSDKLFLSYPAADE 666

Query: 707  NIPTIASR-----------------WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL---- 745
                +                    +L    +L   +    ++ R       T +L    
Sbjct: 667  EGKVLTESNYLRKIKGQFKNLSEAVYLTDPSLLNEEEQSSYIRSRQAVLGILTSQLQMYK 726

Query: 746  ----------------------DYTTKQP----------HYKRPKPFPPLEAQPRTYSFS 773
                                    T KQ              +      L  +    S S
Sbjct: 727  RGYPVSNVWWDAYNSYFDDKEESRTAKQVFSSLYYENKTAPLQETTAKGLFGENIHASVS 786

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE--- 830
             +++  +  +  +A+  LKL+   HF+      D G +FH  +  +  +    N      
Sbjct: 787  RMEKFFSCEFQHFAQYGLKLEERAHFQ--LQAVDMGEIFHAAMEWISAELKRNNMDWGSL 844

Query: 831  -------INHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEK 880
                   +  L    +    + E L         ++   +I      + +E+   S+   
Sbjct: 845  NIEECKHLAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRP 904

Query: 881  IFVNIPAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KK 926
            + + +   +  +   +           L G  DRID+ +      + I DYK+  +    
Sbjct: 905  VGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDRIDVAEQDNRTFLRIIDYKSSAHDLAL 964

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADE 985
                  +  Q+      +   +   +    + A + Y  +      +      K+ + D+
Sbjct: 965  TEVYYGLALQMLTYLDIVVMNAQKMLGKNAEPAGVLYFHM-----HNQFVQSDKELTEDQ 1019

Query: 986  LSEKSLK 992
            L+++  K
Sbjct: 1020 LAKEVQK 1026


>gi|289551203|ref|YP_003472107.1| ATP-dependent nuclease, subunit B [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180735|gb|ADC87980.1| ATP-dependent nuclease, subunit B [Staphylococcus lugdunensis
           HKU09-01]
          Length = 1155

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 110/929 (11%), Positives = 244/929 (26%), Gaps = 137/929 (14%)

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKY 194
           L L  S A     ++ LA+ I   +      EDL +L  +           + + +    
Sbjct: 107 LKLYHSQAKYYGFSEKLAEQIQDFKKYVVTPEDLQSLVTQHSLPTRMQHKLEDIALIYNA 166

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           +  ++           ++              +  I I G          ++  +  +  
Sbjct: 167 FERQIA--GRYITSEDKLKQFINVMPQSQWLKRAEIYIDGFHNFSSLEYDIIKHLVKYAK 224

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
              VL   D              S     S           L ++   L+I         
Sbjct: 225 KVTVLLTTD--------GNTDPFSLFRKPSEVLQH------LEEIAAELNITLNRKHFNQ 270

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                 +    +  +          +                  + ++EA + REE   +
Sbjct: 271 QHRFTNHDLVHLEQEFDALQINPIQQQ---------------GHIQILEAASIREEVNEV 315

Query: 375 AIALRMSLDEN---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
           A  +  +  E     +  A++  D + A  +   L +F I   I     ++      ++ 
Sbjct: 316 ARQIIKATREQHLRYQDIAILYRDESYAYLLASVLPQFDIPFHIDIKKSMTHHPIMEMVR 375

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
           SL+  +       A+  L K  +  +           + LE   L          D    
Sbjct: 376 SLIEVMRTNWSTDAMLRLFKTDILTYQIKNSSYL--IDLLENFVLERGITGKRWFDESRF 433

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH----ILQCITPLVTYKTNKNSTCGN 547
            ++         H    + + + E        V H      Q +    T      +   +
Sbjct: 434 QIEHFQKMGRKEHQLTPEEQETFEKVVQLKDDVVHKILYFEQAMNDAHTVIDYATAFYES 493

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
           +   +     +T    +  D HR       ++    +  +   ++      + +   + +
Sbjct: 494 MEYFELPNQLMTIRDTLEAD-HRYEEAEEIDQIWNGIIQILDDLVTVFGTTEMSLQRFNE 552

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
           ++   ++        +    + I     +++ N   + + G+N+GV P+  A    +S  
Sbjct: 553 VLDIGLEQLEFAMIPQTLDQVSIGSMDLAKVDNKAKVFMVGMNDGVIPQPIASTSLISDE 612

Query: 668 MQSDLNLKTAEK--------YIGQAAHDFEMANGT-RHLIYTRSLRENNI-PTIASRWLQ 717
            +     +T  +         + +A   +       + + ++ SL  N+      S +L 
Sbjct: 613 EKKFFETQTHIELSPTSDVLQMDEAFVCYIAMTRATQQVTFSYSLMGNSGDEKEISPFLS 672

Query: 718 RLLVL------------GGTDFFDNLKKRGQCYLDWTRKL-----DYTTKQPHYKRPKPF 760
           ++  L                    ++   Q  +     L     D           +  
Sbjct: 673 QIKQLYTNMQIDNLNYVHAQQPLLLVEHGHQTKIHLFEALRAWLDDEIVADTWIDTYQVM 732

Query: 761 PPLEAQPRTY-------------------------------SFSEIKQLINDPYAVYARR 789
                                                    S S  +     P+  YA  
Sbjct: 733 RDDAQLNDGLDYLLTSLTYDNHTVQLSDQLAQQLYGKAINASVSRFEGYQQCPFKHYASH 792

Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
            L+L+     K      D G +FH+++  +  +            +KQ+     E+    
Sbjct: 793 GLRLNER--TKYQLQNFDLGDIFHSVLKYISDRVNGDFKHLNAKTIKQLTSEALEEILPK 850

Query: 850 PHIDII--------WRHLFHKISHSFLEHE--EKIQSSIEKIFVNIPAK----------- 888
              +++               I  + L     +   S  +        +           
Sbjct: 851 VQFNLLNSTAYYRYLSQRIGAIIETTLGALKYQSSYSKFKPQRFETGFRRKPHEDELMAE 910

Query: 889 --MAIESIGIHLTGFADRIDLL--KSGFVD-ITDYKTGDNPKK---ETAQKLIDPQLSLE 940
                + I I++ G  DRID           I DYK+     K   +     +  Q+   
Sbjct: 911 SLQTTQGIPINIRGQIDRIDTYTEDDQSYVNIIDYKSSKESAKLDLKKVYYGLQMQMMTY 970

Query: 941 AAAL----KAGSFSQIDCRKVANLFYIRL 965
              +    +    S     K   L Y  +
Sbjct: 971 MDIVLQNHERLGLSDT--VKPGGLLYFHV 997


>gi|323464967|gb|ADX77120.1| exonuclease RexB [Staphylococcus pseudintermedius ED99]
          Length = 1154

 Score =  185 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 112/993 (11%), Positives = 273/993 (27%), Gaps = 145/993 (14%)

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL-AADFLKI 190
             ++ L L  S    +  +  + + I   E      E +  +  + +           + +
Sbjct: 102  AQTELKLYRSQVGYMGFSTKVREQIQDFEKYAVTPEMVSDMATDAHLEPRTRHKLHDIGL 161

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
              +    R+     ++       +            +  I I G         +L+  + 
Sbjct: 162  IYEKLQARMSSEYITAEAMMDRLV--TLIPQSKWLKQAEIYIDGFHNFSTQEYQLIEALV 219

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
             H     +    +                                  K  + L    E  
Sbjct: 220  KHVKSVTLALTTNGDQDA------------------------LSMFRKPSESLRHFEEMA 255

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
             R+G        R    ++      +  +        +  +       + ++EA   REE
Sbjct: 256  HRVGQPL----ERLYFHTQYRFKAPSLTVLEQQFDALQPESHHTADEGIRILEAPTTREE 311

Query: 371  AISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
               +A A+   + E     +  A++  D +    +   L ++ I  +I     ++     
Sbjct: 312  VNEVARAILRDVREKQYRYQDIAILYRDPSYVYLLDAILPQYDIPYNIDVKKSMTHHPIM 371

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             +L +L+  +     F  +  L+K  +     P+       + LE  A+         +D
Sbjct: 372  EMLRALIEVLRTEWQFEPLMRLLKTNVLTQMMPDSAYL--VHLLENFAIERGIYGKRWLD 429

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
             +   L++        + P      +EE+      ++D   +    L+ ++         
Sbjct: 430  PQYFELNQFRKMGIQPNDPL-----TEEEAATFERVIDLKTKVFNQLLNFEEKLAQGSNA 484

Query: 548  LSIS----------DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
             + +          +     +T    +   + +       ++    L  +   ++     
Sbjct: 485  KAFATYFYEAMEGFELPNQLMTQRDMLDE-QGQHEAAEEIDQIWNGLIRVLDDVVTVFGD 543

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                   +++++   ++        +    + I     +++ N   + + G+N+GV P+ 
Sbjct: 544  RDMTLTRFLEVLDVGLNELEFSMIPQTLDQVTIGTMDLAKVDNKKHVYMIGMNDGVMPQA 603

Query: 658  TAKNPFLSRVMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSLREN-N 707
               +  +S   +             T++      A    F M   T  + ++ SL +   
Sbjct: 604  INGSGLISDNEKKAFETFAGVQLSPTSDILQMDEAFVCYFAMTRATETVTFSYSLMDASG 663

Query: 708  IPTIASRWLQRL----LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
                 S +L  +      L          +     ++   +      +            
Sbjct: 664  AEREKSPFLNDVRQMFRNLDIIQLTHQHARDTLSLIEHPHQTKVHLFEAFKTWLDEGLIS 723

Query: 764  EAQPRTYSFSEIKQLIND------------------------------------------ 781
            +    TY+       +ND                                          
Sbjct: 724  DTWFTTYAVMAQYPQLNDGLTHLKSALTYNNDTVQLDGELTTQLYGKAIHASVSRFEGYQ 783

Query: 782  --PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
              P+  Y    L+L+     K      D GT+FH+++  + +K   +        + Q+ 
Sbjct: 784  NCPFKHYTSHGLRLNER--TKYQLQNFDLGTIFHDVLKYIAEKVEGRFNQLTELQIAQLT 841

Query: 840  DSHFEKENLPPHIDII--------WRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK- 888
            +   E        +++               I  +  +    +   S  + I      + 
Sbjct: 842  NDALETLLPHVQFNLLNSTSYYRYLSQRIGAIVQATLYAMKYQTSHSQFKPIAFEKSFRK 901

Query: 889  -------------MAIESIGIHLTGFADRIDLL--KSGFVD-ITDYKTGDNPKKET---A 929
                            + + I++ G  DRID    ++     I DYK+  +         
Sbjct: 902  SPKDASELKAETLYTSQGMPIYIRGQIDRIDTYQKENKSFVNIIDYKSSSSSASLDLVKV 961

Query: 930  QKLIDPQLSLEAAALKAGS--FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
               +  Q+                ++  K     Y+ + Q        ND +    DE  
Sbjct: 962  YYGLQMQMMTYMDIALQNKERLGLVEEVKPGGFLYMYVHQFRDEKRAWNDIEAAKLDEAF 1021

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
             KS + L  ++    +  + +   L    KS+I
Sbjct: 1022 LKSYQ-LQGLLNNDVDVLEAYDERLTAGFKSDI 1053


>gi|116671303|ref|YP_832236.1| UvrD/REP helicase [Arthrobacter sp. FB24]
 gi|116611412|gb|ABK04136.1| UvrD/REP helicase [Arthrobacter sp. FB24]
          Length = 1150

 Score =  185 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 131/1123 (11%), Positives = 285/1123 (25%), Gaps = 165/1123 (14%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
            AP +     +I A +          D L+P  +    +  P++ A   LR  F     + 
Sbjct: 78   APGTGKSTVLIEAAV-----RRAERDGLDPERM---LVLAPSRLAADSLRDRFTARLNRS 129

Query: 72   STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
             +  P  ++      +             P    +          LI +  L        
Sbjct: 130  LSTTP-ARTWASYAFDLIRRAKAEGILPLPRPPRLL---SGPEQDLIIKELLEGHTLPGL 185

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                     +        + +  + D I    +   DL AL  +     W+ AA      
Sbjct: 186  ELPWPDDLGAALETRGFRQEVRQLFDRIIESGRTPADLVALAQQCNRPDWIAAAALYAEY 245

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLM 246
                  R+ E  A  P G   A  +   +        +     I++     + PA   L+
Sbjct: 246  RDVLDLRMPE--AFDPAGIITAARQIFQDAPEFLAAERERLQLILVDDIQEANPAVFELL 303

Query: 247  STVANHPNGAIVLP---------GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            + +A   +  +            G    +   + + +        S     +        
Sbjct: 304  ADIAAGKDAYVAFSPDTVVQGFRGARPDLTAELPHLLAPADATGRSPRDAAAPGT-ALER 362

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
             L           +   +V+  +  R+   S   L          +              
Sbjct: 363  PLWRTHRHTPAVAQAWLSVAGRISQRAGSQSARRLESAEPPSNRPESGAVP------ACG 416

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINID 414
             V      +  +E   +A  +  +   +++     A+I  +     +++  L   GI + 
Sbjct: 417  GVEGHILPSPVQELRYVAQRILDAHLNDRRELGDIAVIVRNGGQLNQLQRHLAGHGIPVR 476

Query: 415  IS-AGIPLSTTLHSSILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
            +  A   +   +    L                A   L+   +      E    R     
Sbjct: 477  VPVAESAVRDEVAVRPLLDAYAVALDPAVLTPEAAVALLTSRIGGATSIELRRLRQSLRR 536

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
            E +   G + S  ++    L    +AT           +R+ E  +E A           
Sbjct: 537  EEILGGGGRTSDALLVESLLEPGALATTGIEGRSARRVARMIEAGREAARA--------- 587

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
                      N+     ++ + T L                      +    L     + 
Sbjct: 588  -------PGANAETVLWALWNSTGLAARWTDAALAGGAAGARADRDLDAMMALFHTAERY 640

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            ++       +      ++++ +  +T+  + +    + ++    +    +  +I+ GL E
Sbjct: 641  VDQLPGSGPD-QFLEYLLSQELPMDTLAARAQLEDAVELMTPASAAGREWPVVIIAGLQE 699

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ-------------AAHDFEMANGTRHLI 698
            GVWP    +   L   + +D      +  +                       +  R L+
Sbjct: 700  GVWPNTRLRGELLGSTLFADAVEHGVDHALQLGPISRLREIRYDELRSFSTAVSRARELL 759

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTD--FFDNLKKRGQCYLDWTRKLDYTTKQP---- 752
               ++   +     S +L  +  L            +R         +L    +      
Sbjct: 760  ICTAVSSEDE--QPSSFLDYVAPLHPGQDRRTFTPVERPMTLRALVAELRQHAQLDGRFA 817

Query: 753  -------------HYKRPKPFPPLEAQPRTY------------------SFSEIKQLIND 781
                             P                               S S+++ +   
Sbjct: 818  AESVEAARVLARLAAAEPSVPGAHPDSWWGLAALSSEERIVPPGGTVFVSPSKVESVQKS 877

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
            P   + + +                  GTL H I  +L     +         + +++  
Sbjct: 878  PLDWFIQAVGGEAATDF------ARSLGTLVHAIAQDLPDASGS-------EYLVELVRR 924

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIES------- 893
                         +       +     ++           + V    ++ +         
Sbjct: 925  WPALGMKDNWEGKLDFQRAEGMVRKLAQYVLVMRSEGRSLVGVERDFEVKLPDIVDIPQP 984

Query: 894  --------------IGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLS 938
                              L G  DR+++   G + I D KTG   P K    +   PQL 
Sbjct: 985  ETLVPAATDAEPEVRSAVLRGQVDRLEIDAEGRLVIVDLKTGKRQPSKADLARH--PQLG 1042

Query: 939  LEAAALKAGSFSQIDCRK---------VANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
               AA+ AG F++    +                +L    K   I   +    +D     
Sbjct: 1043 AYQAAVVAGGFTEPGTAEGDLQSGDSQPGGAVLAQLGTSSKSPGIQVQEPLDGSDN---N 1099

Query: 990  SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
               +++     L +G   F +    ++  +      H  R+ E
Sbjct: 1100 WALDMVNDAARLMSGSV-FEARHDPAKSGHGG----HGCRLPE 1137


>gi|307354471|ref|YP_003895522.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571]
 gi|307157704|gb|ADN37084.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571]
          Length = 1004

 Score =  185 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 151/1086 (13%), Positives = 302/1086 (27%), Gaps = 201/1086 (18%)

Query: 25   LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
            ++   ++   R +   P     +     +++A  E+     + T         I +    
Sbjct: 36   VITEKILHMIRENGAKPE---EILALTFSEKAAAEMAERLEKETDISRL---TIATFHSF 89

Query: 85   VEEKFTADLLLSYNLNPPVSNIQRLL-ELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
              E    ++L +      +S    L+   ++LI  W  K  D       E   + P    
Sbjct: 90   CLEVLEDNVLDTG-----ISFNSGLISRTSQLI--WGMKSIDSFGFEAVEIGNNGPSVI- 141

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL--------AADFLKIA--SK 193
                  +++ D I     E    ED+     EK                +D LK+    +
Sbjct: 142  ------ESIIDGISRFRDELISAEDIEEYLEEKNAQETSADEDIYLGKLSDLLKVYREYE 195

Query: 194  YWTERLVELNASSPVGYQIALMRA--EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +  R   L+    +   + L R   +     +     I++     +  A   L+  + +
Sbjct: 196  NYKRREELLDFDDMIHETVRLFRNKPDIRRQYENRFRYILVDEFQDTNYAQLELIKLLTS 255

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                  +    D       +    E + +  + +                          
Sbjct: 256  GH----LCIVGDDDQSIYRFRGACEGNVDEFAGHFKDH---------------------- 289

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                    +        K                   + + +     V + E  NE  EA
Sbjct: 290  ----KKVVLEENYRNTGKILRVARQLIECADGSCTKNLRSNRGEGEPVIVAECSNENTEA 345

Query: 372  ISIAIALRMSLDEN--KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
              +A  +   + E     + A++   R+   +    L    I  + +             
Sbjct: 346  GYVADEIESLMGEGFLPGEIAILCRKRSECGKFHKILDSRNIPCEFTGDAEFFAIPVIKD 405

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
              S L A+                          L+R      +      + +     ++
Sbjct: 406  AVSYLKAVANPA-----------------ESAIPLNRMMRQAGVSETAILEINTGAKQIR 448

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
                           V     R   E+        D     I  +       ++     +
Sbjct: 449  -------REGGKGDGVLEAMKRCGTEE--------DPDTIVIREVAENVDALSAARHKKT 493

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
            +    +  V     +   +   +  L    E     S  +   E G  +       + ++
Sbjct: 494  LPALVREIVLRTGKLYSKDREGVAALNRLYEIALEFSRINPSGEIGDLLDH-----LSLL 548

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
              L          +  S + I+   +S+   F  + +  L E  +P N    PF   V  
Sbjct: 549  RDL--SGDFGVNEKTGSGVRIMTVHQSKGKEFSAVFVTDLAERRFPLNYRSKPFRVPVDL 606

Query: 670  SDLNLKTAEKYIGQ----AAHDFEMANGTRH-LIYTRSLR--ENNIPTIASRWLQRLLVL 722
            S       ++            +      +  L  TR++R  EN   +  S +L  +  L
Sbjct: 607  SKSIRPGDDEKELYKQEERRLLYVAMTRAKEKLYLTRAIRYGENKNDSKPSVFLTEIDYL 666

Query: 723  ------------------------GGTD----------------FFDNLKKRGQC----Y 738
                                    GG                     + + R        
Sbjct: 667  NNTDISIVSTDGGKNGKDNLISATGGPAEDPFSEENKLMKEAVAAIADKRYRSAVGKILA 726

Query: 739  LDWTRKLDY------------TTKQPHYKRPKPFPP-LEAQPRTYSFSEIKQLINDPYAV 785
            L++ R LD               ++P   R KP P          S S +K   + P   
Sbjct: 727  LEYVRSLDEGKEFDNREFLNIPFEKPAVPRRKPEPLIKPGDGTRLSASALKLYDDCPLRF 786

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
               +IL++               GT  H II  L K ++   TP +    + +++  +  
Sbjct: 787  KFEKILRI-PTEPRTY----FSLGTTAHLIIEHLTKMKMGGETPSMEKA-EDLLERFWSP 840

Query: 846  ENLPPHIDIIW-RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
            +           R       +++LE E    +    +   +  ++ +        G+ DR
Sbjct: 841  DAYSSQKHEREDRTRLIAHLNNYLEWEM--NNPNIPVETEMEFEIRVLGTPFT--GYIDR 896

Query: 905  IDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            ++  +SG   + DYKT   P  K  A++  D QL+L A  +K    +     KV+ LFY 
Sbjct: 897  LERTESGGYAVVDYKTSKTPMSKNDAKE--DIQLNLYALCVKEK--TGSLPEKVS-LFY- 950

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ-PFISHLRLSEKSNIQS 1022
             L +   +D I + +   +  E +E         +  +  G+  P  S       + +  
Sbjct: 951  -LDKGKMVDYIPDYESISAFLENAEPV-------IDRIFAGDFEPKESR------NCLYC 996

Query: 1023 EYDHLA 1028
            +Y  L 
Sbjct: 997  DYRILC 1002


>gi|163815443|ref|ZP_02206816.1| hypothetical protein COPEUT_01606 [Coprococcus eutactus ATCC 27759]
 gi|158449080|gb|EDP26075.1| hypothetical protein COPEUT_01606 [Coprococcus eutactus ATCC 27759]
          Length = 1258

 Score =  185 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 108/917 (11%), Positives = 238/917 (25%), Gaps = 135/917 (14%)

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW-LLAADFLKIASKYWTERLVELNA 204
            +     +  ++  +       E++     +             +++  + + E     + 
Sbjct: 125  MGFVDEMKSMMSELFQYAVDREEIDMAMEQMDSESSTYRKLHDIRLIYEKFEEH-NANDQ 183

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                     L+ A  E     +K  +   G TG  P   +L++ + +H         +D 
Sbjct: 184  YIVAEQLSQLLAANVEKSQFISKSHMYFDGFTGFTPVQMKLVTQLMSHAASVTFAFDIDP 243

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                                      +  + L K       K      +  + N +    
Sbjct: 244  D----------------RIGLAKPKEYELFRLTKETIAAICKAAADVHVDILDNVVMCGQ 287

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
              I   F           +I       I      + L+  D  R+EA+ +A  +R  + E
Sbjct: 288  GEIPYRFRDDPCLAAFERNIFRYPHQKINGAADSIKLVRTDRARDEALYVASQIRKLVRE 347

Query: 385  NK---KKSALITADR-NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                 K  A++  D  ++A   +  +  + I + I     L     S  + + L  +   
Sbjct: 348  KGYRYKDIAVVAGDLHDVAGYYRQAMDEYRIPVFIDENTALRGDPCSDTVRAFLAVMSDN 407

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
              F ++  L+K         E      +        R  +                  + 
Sbjct: 408  FSFNSVFRLLKSG-----MTEVAYMDVERMENYALKRNLRGYKSW-----------LKEI 451

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-----VTYKTNKNSTCGNLSISDWTK 555
             + +   +   +    +++  +  +  +    P       T           L      +
Sbjct: 452  TDKNNSDYAQEMDSIRRQIVSIFGEDCIDVYKPSSPNSKDTVTNYTKELYNFLDELHVCE 511

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                  + +   E        + +    + +LF K++      K    E+  ++   I  
Sbjct: 512  KLEERRKRLYE-EKLFDEGDAYGQIFDKIVALFDKVVTILGDEKMTVKEYAGVLEAGISD 570

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-- 673
              +         + +     SRL +   L   G+NEG+ PK   K   LS   + +L   
Sbjct: 571  MEIGIVPPTIDRVVVGDMTRSRLNHVKALFFTGVNEGIIPKPAKKGKILSNGDRQNLEKC 630

Query: 674  ---LKTAEKYIGQ--AAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
               L  ++K        + +           I  R + E+      S  + R+  +    
Sbjct: 631  GVTLAPSDKTNAYIEQFYIYTSLTKPSDNLYIVFRKMGEDMNAVGPSYLVDRIRNIFPDI 690

Query: 727  FFDNLKKRGQ------------------------------------------CYLDWTRK 744
              ++     Q                                           +L   + 
Sbjct: 691  EIEDYDLDSQIPETVNGALRYLVSRYDEVGSDGTLQAVKRLIEQQGGNTEYATWLGAMQS 750

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                  +     P+    L     T S S++++     +  + +  L L          +
Sbjct: 751  GYDYVNETKTLSPETVRLLYGTELTESVSKLEKYAECQFKYFLQYGLGLMDRET--YQLN 808

Query: 805  RTDRGTLFHNIITELIKKRINK----NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
              + G + H+ + ++ +    K            +        +        +       
Sbjct: 809  AANVGIILHSSMQKMFEYIKTKCGNNWADITETELADRAVEFVDASADDEAAEYFEDSSR 868

Query: 861  HKISHSFLEHEEKIQS----------SIEKIFVNIPAKMA-IESI------------GIH 897
                  FLE      +           +           + +                + 
Sbjct: 869  AAYVKKFLEDIAVRTAKTLRTFVLCGDMHPENFERYFDTSKLGDGIENYIFKLPNGMTMS 928

Query: 898  LTGFADRIDL-LKSGFVD--ITDYKTG-DNPKKETAQKLIDPQLSLEAAA---LKAGSFS 950
            L G  DR+D  +  G V   I DYK+      K+     +  QL    A    L+    +
Sbjct: 929  LKGVIDRVDEYVSDGDVYFKIIDYKSSDQKIDKDRVLAGLQMQLVTYGAIAYELEKRRMN 988

Query: 951  QID----CRKVANLFYI 963
            ++        V  L Y 
Sbjct: 989  ELGRSSEQVHVGGLLYY 1005


>gi|153209588|ref|ZP_01947448.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
 gi|120575307|gb|EAX31931.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
          Length = 862

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 105/696 (15%), Positives = 214/696 (30%), Gaps = 76/696 (10%)

Query: 362  IEADNEREEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGI----NIDIS 416
            +   N   E  ++A         E  +K   +  D    R   L L         + +IS
Sbjct: 216  VNFQNSEMEIQTMARWAYAQWEKEPNQKIGCVMPDLTQHRTQVLRLFTEIFGSSEHFNIS 275

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
                L+    + I    L       D M + T+ +         +               
Sbjct: 276  VAESLTQIPLTQIALKCLELDPFKIDIMQLGTVFRSSYINSRTVDVC------------- 322

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV--LLVDHILQCITPL 534
                       L + +  ++    +    P +      + +       L       +   
Sbjct: 323  -----------LAAQLDVKLRESAHWQANPAFILYHLHQLQPHFQSTTLTTRCQTWL--- 368

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                     +   L  S W +     L  +     R L +  +++  +  + L       
Sbjct: 369  ------SKRSSTRLFPSAWAQQFSEELTAIGWPGQRSLDSKEYQQWKRWENLLHEYAALD 422

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                +      + ++ +L      +P   ++S++ ILG LE+    FD L + GLN+  W
Sbjct: 423  TFTQQQTRKNALQLLRQLAHHTLFQPMSSQNSSIQILGLLETTGHYFDKLWIAGLNDKKW 482

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIPTI 711
            P   + NPFL   +Q    +  A                      +I +  L+E +I   
Sbjct: 483  PPVASPNPFLPLSLQRRCQMPHASAKREMEYTLQLQNRLLKSAPAIILSTPLQEGDIQLS 542

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
             S  ++    +   D       +   +      L         +  +     E +P +  
Sbjct: 543  TSPLIRHFPEINNEDL------QLPAWQPLKAHLFKIKMLETIEDAQAPALQENEPMSGG 596

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE- 830
               ++     P+  +A+  L+   +       +  +RG   H  +  + KK  +  T   
Sbjct: 597  SGLLQSQSICPFQAFAKVRLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNS 656

Query: 831  -INHLMKQIIDSHF-----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
              +  ++ IID        +++ + P      +    ++  ++L  E+K     E     
Sbjct: 657  SSDGELENIIDETITHLISQEKLIQPLFLNTEKKRLKQLIKNWLLLEKKR-PPFEVSQRE 715

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLE-A 941
                + I    + L    DRID        I DYKTG     +     +L   QL L  A
Sbjct: 716  TKRHIKI--GPLRLEVRIDRID----NNCFIIDYKTGGQNSVDDWFGDRLKSIQLPLYCA 769

Query: 942  AALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
             A +     +++++  +K+     I   +KF            + +EL  +    L  + 
Sbjct: 770  YAAREATGIAYAEVRSQKMTFKGLISANEKFNSFSEVK-PSPLAWNELIRRWKMQLYHLA 828

Query: 999  TLLQNGEQPFISHLRL--SEKSNIQSEYDHLARVAE 1032
                +G+    + +    S+        + L R+ E
Sbjct: 829  VDFSSGK----ADVDPLDSKTVCKVCHLNSLCRIGE 860


>gi|111225392|ref|YP_716186.1| putative ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111152924|emb|CAJ64672.1| putative ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 1170

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 131/996 (13%), Positives = 264/996 (26%), Gaps = 106/996 (10%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD---- 83
             TLVE             S+ +   ++RA  ELR       G   +        G     
Sbjct: 72   ATLVEAVAARIEAGADPRSILVLTFSRRAAGELRERITARLGPGGSASRGGPGSGGGPGA 131

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                 +   LL +++   P     RLL         R  +    +D  P  P  L  +  
Sbjct: 132  WTFHAWCLALLRAHDRPAPHGGF-RLLSGPERDSRLRELIEGSREDGRPVWPPQLARALG 190

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                  + +  ++        +   L  L        W   A+F ++    +        
Sbjct: 191  -TRGFTEEVRALLARAREVGLEPVGLAQLARRTDRPDWAALAEFYEMYLDVFGFEGALDY 249

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
            A       +    AEA   ++     + +     + PA  RL+  VA      +V    D
Sbjct: 250  ADLVHRAVVVAEGAEAGEALRARYRHVFVDEYQDTDPAQERLLRAVAGGGRDLVVF--GD 307

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +                    P       +  L   R         S  +  R
Sbjct: 308  PDQSIYAFRGAEVAGLLDFPQRFGT---PGRGGGAPIVALRTGRRMAPAPLLASRHVARR 364

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
                    +P     +       + I         V +    +   EA ++A  LR    
Sbjct: 365  --------IPAAGLPVAEIRAHRDLIGRTDLGAGRVQVRTYPSAGAEAEAVADLLRREHL 416

Query: 384  ENKKKS---ALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFK 439
            EN       A++    +   R++  LT  G+ + +     P++    +++L   L     
Sbjct: 417  ENATPWPAMAVLVRTADRIARLRRVLTAAGVPVSVDGDDLPVAQEPAAALLLLALRCADN 476

Query: 440  L---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALE-----------LVALRGNKNSYDI 485
                    A  TL+  PL                                 R        
Sbjct: 477  PAGALTADAARTLLTSPLGGADPAGLRELGRALRAFDRDAGAGDRDAGAGDRDAGGGDRD 536

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT-YKTNKNST 544
               +         ++       W  R+++     A  + D ++     L     + + + 
Sbjct: 537  AGARQPAASAELVRQAVADPDRWLVRVADPVARPARRVGDLLVVARRALREPAGSPEQAL 596

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                S S W +  V               +L   +    L    +++ +        A  
Sbjct: 597  WALWSASGWQQALVAASAAGGAAGRAADRDL---DAVVALFDAVARLAQRRGPGTGAASL 653

Query: 605  WIDIITRLIDGETVKPKI--EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
              ++  + I  + + P     +   + +L    ++ L +D + + G+ +G+WP    ++ 
Sbjct: 654  VDELGRQQIAADAIAPVGEDARRRGVRLLTAHRAKGLEWDVVAVCGVQDGIWPDLRERHS 713

Query: 663  FLSRVMQSDLNL------KTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIASR 714
             L                 T +  +      F +A     R L+ T     ++  ++ SR
Sbjct: 714  LLGAEQLDAPARGGLRPPLTRQDLLADERRLFYVALTRARRRLLVTAVNSPDDDGSLPSR 773

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------------------ 756
             L  L V            R    +     L     +P                      
Sbjct: 774  LLDELGVAVEN--ISGRPARPLTLVGLVATLRRLATEPTSSPALRAAARRRLAALAAARD 831

Query: 757  -------PKPFPPLEAQPRTYSFSEIKQLIN----------------DPYAVYARRILKL 793
                   P   P         + S++  +                       +       
Sbjct: 832  DAHRPLVPAAHPTTWWGLLDVTDSDVPVVAPGAPLRLSGSSLSSIGTCSLRWFLEH---- 887

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                           G + H +  E+   R   +   ++  +  +      +       +
Sbjct: 888  -EAHAVTVASTAQGFGKVVHALADEVTTGRTPADLAALDARLDTVWRHLDYEARWRSDQE 946

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIGIHLTGFADRIDLLKSG 911
                        ++   E   +     +   +    ++ +    + L GF DR++L  +G
Sbjct: 947  RAAAREALARFLAWHAGERGRR----VVDAEVRFTCRLHVAGREVMLRGFIDRLELDDAG 1002

Query: 912  FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             V + D+KTG +     A+    PQL     A++ G
Sbjct: 1003 RVHVIDFKTGRSAPGR-AELATHPQLGSYQLAVRTG 1037


>gi|238923930|ref|YP_002937446.1| AddB [Eubacterium rectale ATCC 33656]
 gi|238875605|gb|ACR75312.1| AddB [Eubacterium rectale ATCC 33656]
          Length = 1156

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 122/1053 (11%), Positives = 291/1053 (27%), Gaps = 175/1053 (16%)

Query: 48   TIYVP------TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
             + VP      T+R       + ++++  K+ +   + S   +    F    + +  +  
Sbjct: 35   LVIVPEQFTMQTQR-------QLVDLSENKAIMNIDVLSFKRLAYRVFDELGITNLTV-- 85

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             +    + L L +L     +KL  I ++L     +S              +  ++  +  
Sbjct: 86   -LEETGKNLVLRKLAAQEADKLGVIGRNLNRIGYIS-------------EVKSLLSELVQ 131

Query: 162  EEKKWEDL-HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 E+L   + +             + +  + + + + +   +      + ++   AE
Sbjct: 132  YNISPEELGRYIASGMLSDTLSDKLKDVLVLYEAFEKFMQDKYIT--AEEILNVLSNVAE 189

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                     I     TG  P   +L+  +        V   +DC     I+ +   +   
Sbjct: 190  ESAILRNSVIAFDEFTGFTPIQNQLIKKLFVISKKIYVTLTIDC--REDIFKSRGMQELF 247

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                             K L  +            + ++ Y  +     SF         
Sbjct: 248  DMPK----------RTVKSLTEMAAFYGIEVEEPIILDKNYRLAENEELSF--------M 289

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRN 397
               +   +  + +K    + +    + ++E   IA  +   +       +  A++T D N
Sbjct: 290  EQQLFRKRRSSFKKAPKHIHIDCLRDPKQELTKIARRINELVRNENLRYRDIAIVTGDVN 349

Query: 398  LAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            +    V+    ++ I   I A   +        + S+ +   +     A+   ++    +
Sbjct: 350  IYAGYVREIFDKYNIPYFIDATQEILFHPFIEFIRSIPDIAAQNFSADAVFRFLRCGFTE 409

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                E  +                    +    +     +   K+              D
Sbjct: 410  LSASEIDVLENYVLAC-----------GVRGKSAWDKKWVRLPKHKAGY----------D 448

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-----DWTKLTVTCL--QNVCLDEH 569
             EL     ++I++ + P+    ++K ST  +  ++         +       +   LD  
Sbjct: 449  IELLNQSREYIMELLKPVYQVFSDKKSTVKDYVLAIYKLIVLLDIPDKLAKKEQALLDAG 508

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
             +  +  + +  K +  LF K +        +A E+  I+   +D   V        T+ 
Sbjct: 509  DQTASKEYGQIYKIVMQLFEKYVAVLGDECMDAEEFTQILDAGLDAADVAVIPPGYDTVT 568

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQ 683
            I     +RL N   +   G+N+G+ PK   +   +S+  +  L          A +    
Sbjct: 569  IGDIERTRLTNIKVMFFAGVNDGIVPKAAGRGGIISQYEREALKELDIELAPGAREQAFI 628

Query: 684  AAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGT------DFFDNLKKR 734
                  +     +R L  + +           S  +  L  +         +  + L   
Sbjct: 629  QRFYLYLNMTKPSRELYISYTRLDSEKKAAQPSYLIGILKGMFPELVVTETEDVEQLLDI 688

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA----------------------------- 765
                      L         +        +A                             
Sbjct: 689  SSRQSALDYLLSNEVDDRWCEIAAAVMFYDASVSDAGDGNEVDDKAFTQKNSVERLINAR 748

Query: 766  -------------------QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                               +    S +  +Q     YA +    L+L      +      
Sbjct: 749  FEHYSKDPISRNVARSIYGRHMEGSITRFEQFARCAYAHFLNYGLRLTERE--ESGFTSL 806

Query: 807  DRGTLFHNIITELIKKRINKNTPE-------INHLMKQIIDSHFEKENLPPHIDIIW--- 856
            D G ++H  +    KK   ++T          + L  + I+   ++       D      
Sbjct: 807  DMGNIYHEALERYSKKLDRESTDWFSVTDAKRDELAMEAINEVIDEYAGFGIFDTAESQH 866

Query: 857  -----RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE---SIGIHLTGFADRIDLL 908
                 + +F +    +    +  + S            +++    + + + G  DR D  
Sbjct: 867  SISHMKAVFKQTV--WALTTQIRRGSFVPERFEFSFYESLDMANDVTVDIKGRVDRTDTY 924

Query: 909  KSGFVD---ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC--RKVANLFY 962
                     + DYK+G               QL++   A+       +     +   + Y
Sbjct: 925  TDEDRLFVKVLDYKSGNTVFDLVKLYYGTQLQLAVYMDAVMEQKKEALKQVSVEPGGMLY 984

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              +              + S +E+++  LK L 
Sbjct: 985  YHIDDPVIDLKDVTPGTELSEEEINQMILKKLK 1017


>gi|117928983|ref|YP_873534.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
 gi|117649446|gb|ABK53548.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
          Length = 1095

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 117/1001 (11%), Positives = 248/1001 (24%), Gaps = 120/1001 (11%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L +V +    +R+  ELR         +++  P+ ++          AD +      P 
Sbjct: 68   ALENVLVLTGQRRSAAELRRRIALRL-GRTSREPLARTFHSYAFGVLCADAIQRGEPPP- 125

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                 RLL  A   +I R  L   +       P             A+ L + +      
Sbjct: 126  -----RLLTSAEQDVIIRELLRGDLDRGATGWPER-LRPALPTRGFARELREFLQQAVQR 179

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                +D+  L  +     W+    F +  S+     L +     P    +A      EH 
Sbjct: 180  GLTPDDVARLGRQAGRDDWVAIGRFAREYSQV--TALRDAAGYDPAELILAATALLQEHP 237

Query: 223  M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                  +     +++     + PA  RL+  + +   GA ++   D       +      
Sbjct: 238  QLLESCRVRHALVVVDEYEETDPAQRRLLRAITS---GAALVIAADPDQSVYGFRGADPL 294

Query: 278  STNITSSNTTYSTHPQYSLAKLLDF----LDIKREDVKRLGNVSNEMYGRSMVISKS--- 330
                  S+          L +        L   R   +RL  V       +     +   
Sbjct: 295  GVREFLSDFADQRPRVVVLGRAYRGGPALLAAVRRLAERLPVVVPPGVSAAAYRGLAVGA 354

Query: 331  --------------FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                                +       ++ +          V +        +A  IA 
Sbjct: 355  EAGAVRALAGAGAGVAGAGAAAADGDGSVDVRAGAGADGDGSVDVRAFATPGAQAAYIAY 414

Query: 377  ALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLHSSILTS 432
             LR +           A++         ++  LT  G+ + +     P+        L  
Sbjct: 415  HLRHAHLVEGLGWTAMAVLVRSAAQIPPLRRALTAAGVPVRVPEQSSPIVDVPIVRHLLL 474

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
             L                             + RA            +        +   
Sbjct: 475  ALRIAAGQPLLDVERAPTAAASLAEELVAGPIGRADPLQLRRLRIALRRLDRAAGGERSS 534

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
               +A   N+          +          ++   + +T      T +       + + 
Sbjct: 535  AVVLAQVLNDPRDLEVIDEQAAAPALRVARAIEAGRRAVTEPAA--TAETVLWEIWNATG 592

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                      +          +L         +S +   +         A+    ++ + 
Sbjct: 593  LATELYAQALSGGAVGAAADRDLDAVMALFAAASRYVDRLPRAGA----ALFADYLLGQE 648

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL-------- 664
            I  +T+  +  +   + +L    ++   +D ++L G+ EGVWP    +   L        
Sbjct: 649  IPTDTLAARAPEPDGVDLLTAHAAKSREWDVVVLAGVQEGVWPDLRRRGSLLGLRDFLDV 708

Query: 665  -----------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
                                 + +     +    +  A+  R  +   ++  +    I S
Sbjct: 709  LDGRIADAADRGPGGSIRTLEERSAALAEERRLCYLAASRARRKLIVTAVSGDQE--IPS 766

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP--------------------- 752
            R+L  +  L   +       RG         L    +                       
Sbjct: 767  RFLDDIDPLDADERPLTRPPRGLDLPSLLGDLRRAAETADDAVARRAAGHLAQLAAAGIP 826

Query: 753  ----------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
                                 + +P   S S ++     P                  + 
Sbjct: 827  GAAPDGWYGLPAPSTDQPLRRDDEPVPVSPSRLELFTRCPLRWLLESCGG------RGRS 880

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                  GT  H                    L   + D+                 +  +
Sbjct: 881  SASQVVGTAVHRAAATFSVDVA----QLRERLDAALADTDLGTGWFAAAQRDRAAAMVER 936

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
            ++          ++    + V    ++ +      LTG  DR++    G + + D KTG 
Sbjct: 937  LAAWMA------RNPRRLLAVERDFQVTVGRA--LLTGRVDRLEQDDDGRLYVVDLKTGR 988

Query: 923  NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
               ++ A     PQL     A+  G+F +      A L ++
Sbjct: 989  RAVRK-ADLAEHPQLGAYQVAVVEGAFDEGRTPAGAALLFL 1028


>gi|317052676|ref|YP_004113792.1| putative DNA repair protein [Desulfurispirillum indicum S5]
 gi|316947760|gb|ADU67236.1| putative DNA repair protein [Desulfurispirillum indicum S5]
          Length = 915

 Score =  184 bits (467), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 98/791 (12%), Positives = 228/791 (28%), Gaps = 70/791 (8%)

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
             A     T   + +  +         + + +++  + + +     L         +  ++
Sbjct: 160  QAFLRWATIFESTLKENRWIDQARLPHLVERMIRKVALPQPSRLFLMGFDELSPVQIRLL 219

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER------EEAISIAIALRMS 381
                    T              ++    S+     A +          A  IAI +   
Sbjct: 220  EAVMARGCTVIQVIAQDHCALGGHVAMADSESEYWSAAHWALARLQVNPAARIAIVIPQ- 278

Query: 382  LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL- 440
            L++ + +   +       +      +R     +I+AG  L++     I   LL+ + +  
Sbjct: 279  LEQVRHQVESVFDAVFYPQWDFSPESRLRTAYNITAGRTLASVPMVDIALLLLDRLHRNV 338

Query: 441  -NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                  I+ ++  P       E       +                     L   +  + 
Sbjct: 339  ELTQAEISGILLSPFLPGYGEEFNHRVLLDL-------------------QLRQRQQVSL 379

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               T +    SR      +    L   + +  +                    W++    
Sbjct: 380  PLATVIRLAASRHCPRLVKFLRELGAGMQELRSR-------------KARPGQWSERLSQ 426

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
             L        R+L +  ++      + L++         +    + + +I+ +      +
Sbjct: 427  LLTRAGWPGDRRLNSDEYQALEAWNTMLYTFSHCDPIVAELPLGDALKLISTMAHQTIHQ 486

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK---T 676
            P     + + ++G LE+   +FD + + GL++  WP     NP +   +Q    L     
Sbjct: 487  PHSYGEAPVQVMGMLEAGGAHFDAMWIMGLHDEAWPAEPRPNPLIPGAVQRLHQLPRSSP 546

Query: 677  AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
              ++   +A           +I++    E +     S  +     L        L+    
Sbjct: 547  RREWEYASALTHRFLESADEVIFSYPASEGDRHLRPSPLITGRRELS----LRELRLEEA 602

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                   +L  T      +                 S +K     P+      IL     
Sbjct: 603  TATSPLGQLLATASLQTLEDTHAHGLPADTLLRGGASVLKDQALCPFRGIGLHILGATAP 662

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE--INHLMKQIIDSHFEKENLP----- 849
                   +   RG L H+ + ++  K  +    +       +Q I+    +         
Sbjct: 663  CGALAGVNPMVRGILLHSALEDIWNKLESSRGLQKMEARKRRQFIEDSLGRAIQRLQHEL 722

Query: 850  -----PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                 P +  +   +  +    +LE+E+          +     +++  + + L    DR
Sbjct: 723  NITIAPALAQMEVQMQAQWIDDWLEYEKTR-PPFTVASLERYHHISLGGLQLKL--KVDR 779

Query: 905  IDLLKSGFVDITDYKTGDNPKK-ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF-- 961
            ID L++G   + DYKTG    +    ++  DPQL L A  L+  S   +    +      
Sbjct: 780  IDQLENGQHVLIDYKTGQASARDWEGERPADPQLPLYAVTLQDTSIGAVAYALINREACH 839

Query: 962  YIRLKQKFKIDCITND-KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
            +  L  +  +         + S   + +     L  +   + +G   + +     + S  
Sbjct: 840  FRGLAMEEGMLPELGALPDQQSWQTMLQNWKAALENLAGEITSG---YGAISPRDDTSCR 896

Query: 1021 QSEYDHLARVA 1031
                  L R+ 
Sbjct: 897  YCPLPLLCRID 907


>gi|209364041|ref|YP_001424667.2| ATP-dependent nuclease subunit B [Coxiella burnetii Dugway 5J108-111]
 gi|207081974|gb|ABS76477.2| ATP-dependent nuclease subunit B [Coxiella burnetii Dugway 5J108-111]
          Length = 872

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 105/696 (15%), Positives = 212/696 (30%), Gaps = 76/696 (10%)

Query: 362  IEADNEREEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGI----NIDIS 416
            +   N   E  ++A         E  +K   +  D    R   L L         + +IS
Sbjct: 226  VNFQNSEMEIQTMARWAYAQWEKEPNQKIGCVMPDLTQHRTQVLRLFTEIFGSSEHFNIS 285

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
                L+    + I    L       D M + T+ +         +               
Sbjct: 286  VAESLTQIPLTQIALKCLELDPFKIDIMQLGTVFRSSYINSRTVDVC------------- 332

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV--LLVDHILQCITPL 534
                       L + +  ++    +    P +      + +       L       +   
Sbjct: 333  -----------LAAQLDVKLRESAHWQANPAFILYHLHQLQPHFQSTTLTTRCQTWL--- 378

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                     +   L  S W +     L  +     R L +  +++  +  + L       
Sbjct: 379  ------SKRSSTRLFPSAWAQQFSEELTAIGWPGQRSLDSKEYQQWKRWENLLHEYAALD 432

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                +      + ++ +L      +P   ++S++ ILG LE+    FD L + GLN+  W
Sbjct: 433  TFTQQQTRKNALQLLRQLAHHTLFQPMSSQNSSIQILGLLETTGHYFDKLWIAGLNDKKW 492

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIPTI 711
            P   + NPFL   +Q    +  A                      +I +  L+E +I   
Sbjct: 493  PPVASPNPFLPLSLQRRCQMPHASAKREMEYTLQLQNRLLKSAPAIILSAPLQEGDIQLS 552

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
             S  ++    +   D       +   +      L         +  +     E +P +  
Sbjct: 553  TSPLIRHFPEINNEDL------QLPAWQPLKAHLFKIKMLETIEDAQAPALQENEPMSGG 606

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE- 830
               ++     P+  +A+  L+   +       +  +RG   H  +  + KK  +  T   
Sbjct: 607  SGLLQSQSICPFQAFAKVRLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNS 666

Query: 831  -INHLMKQIIDSHF-----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
              +  ++ IID        +++ + P      +    ++  ++L  E+K     E     
Sbjct: 667  SSDGELENIIDETITHLISQEKLIQPLFLNTEKKRLKQLIKNWLLLEKKR-PPFEVSQRE 725

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLE-A 941
                + I    + L    DRID        I DYKTG     +     +L   QL L  A
Sbjct: 726  TKRHIKI--GPLRLEVRIDRID----NNCFIIDYKTGGQNSVDDWFGDRLKSIQLPLYCA 779

Query: 942  AALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
             A +     +++++  +K+     I   +KF            + +EL  +    L  + 
Sbjct: 780  YAAREATGIAYAEVRSQKMTFKGLISANEKFNSFSEVK-PSPLAWNELIRRWKMQLYHLA 838

Query: 999  TLLQNGEQPFISHLRL--SEKSNIQSEYDHLARVAE 1032
                +G+      +    S+          L R+ E
Sbjct: 839  VDFSSGKAG----VDPLDSKTVCKVCHLHSLCRIGE 870


>gi|154498366|ref|ZP_02036744.1| hypothetical protein BACCAP_02355 [Bacteroides capillosus ATCC
           29799]
 gi|150272677|gb|EDM99855.1| hypothetical protein BACCAP_02355 [Bacteroides capillosus ATCC
           29799]
          Length = 1118

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 110/928 (11%), Positives = 245/928 (26%), Gaps = 122/928 (13%)

Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
           +      L            L +   P+        L   +D +++     + L     E
Sbjct: 82  LDAGGRLLLMYAALQAVAGELKVYGRPSRKPEFLSGLIATVDELKSCCVTPKHLWTAGEE 141

Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
             G       D L +    +   L    A+ P      L     +         + + G 
Sbjct: 142 ADGPEGDKLLD-LSLIYGAYEA-LTARRAADPRDRVTRLAEGLEKSGWAKGMD-VYLDGF 198

Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
           T   P    ++  +    N   V    D          I              + H   S
Sbjct: 199 TDFTPQETLVIKALLKQANSVTVALTCDSLDDERDSAGI-----------FAPARHTARS 247

Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
           L +L     +                   +  +++   P+        + +       + 
Sbjct: 248 LLRLARENGVPART--------------EIQENRAKEGPEELAFLEAHLFDAPETPWAEK 293

Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRVKLELTRFGI 411
            + ++L +A +   E    A  +   + E     +  A+           ++    R+G+
Sbjct: 294 PAHISLFKAGSPYAEVEYTAGEILRLVQEEGYRFRDIAVTARSMEGYGELIETIFARYGV 353

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
            + ++    +      +++TS L A+     +  +   +K  L      ++ L       
Sbjct: 354 PVFLAKMSDILQKPILALITSALAAVAGDYQYDDLFRYLKTGLTGVSEEDRDLLENYALK 413

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
             +         D                   H   +   +  ED+ L   L     Q I
Sbjct: 414 WDLRGSRWTQKGDWT----------------MHPKGYGLPVRPEDEALLARLNAVRRQVI 457

Query: 532 TPLVTYKTNKNSTC-----GNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTL 584
            PL   + N + T         +  +   L     +     + R  P L   + +    L
Sbjct: 458 APLEELRKNPDHTGLGHTKALYAFLERIGLPERLEERTAALQERGEPALAQEYSQLWDIL 517

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
            +   +  +        A E+  + + ++    V         +           +   +
Sbjct: 518 CNALEQCAQIVGDTPMEADEFARLFSLVLSQYDVGAIPVSLDRVTAGEMPRLAHKHCKAV 577

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYIGQAAHDFEMANGTRH 696
            L G ++G  P+       L+   +S L           T +            A     
Sbjct: 578 FLLGADDGAIPQAAPSPGLLNDDDRSLLASYGLELAPTLTEKLNRELTIVYETCALAGER 637

Query: 697 LIYTRSLRENNIPTIASRWL---QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
           L  + +   +        +L    R L        +   +           L+   + P 
Sbjct: 638 LSVSWAAMGSGGEEQRPAFLIPRLRGLFPALRPVTEAELEGAFRLSAPRPALELAGRYPE 697

Query: 754 YKRPKPFPPLEAQ---------------------------PRTYSFSEIKQLINDPYAVY 786
             +     P  A                                S S + +  +  ++ +
Sbjct: 698 AAQALRAMPEYAPLVERMEQAAGLTRGKLSRAAVDALYGSRVPMSASRMDKYKSCHFSYF 757

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT----------PEINHLMK 836
            +  LK +     K      + GT  H ++  + +    ++              + +++
Sbjct: 758 MQYGLKAEPRK--KAGFQAPEYGTFVHYVLEHVFQSEEWRDENGGVDGDKLDALTDEIVE 815

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPA------- 887
           + I                      K   + + +  EE   S  + I   +         
Sbjct: 816 RYIKEELGGLAEETPRFRYLFQRLLKPVRAVVRNVAEELSASDFKPIAFELGFGSGKDLP 875

Query: 888 --KMAIESIGIHLTGFADRID-LLKSGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEA 941
             ++ ++ + I ++GF DR+D  +K G   + + DYKTG            +  Q+ L  
Sbjct: 876 PVELEVDGVTISISGFVDRVDGWVKDGRLNLRVVDYKTGRKSFDLTDVWNGMGLQMLLYL 935

Query: 942 AALKAGSFSQIDCRK--VANLFYIRLKQ 967
             L+          +   A + Y+  + 
Sbjct: 936 FTLQKEGRDLFGGHEIDPAGVLYLPARD 963


>gi|331092165|ref|ZP_08340995.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401937|gb|EGG81511.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 1110

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 107/923 (11%), Positives = 251/923 (27%), Gaps = 145/923 (15%)

Query: 150 KNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
             +  ++          + L  + +  + G ++      +    + ++  L +   ++  
Sbjct: 120 GEMKSVLSEFAQYNIDVDTLDKMADSVEEGTYFQWKLKDIAKVYEGFSRYLSDKYITNEE 179

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              + ++              I   G TG  P   ++M  + +     +V   +D     
Sbjct: 180 --LLDVLCHVIGKSDILKDSVIAFDGFTGFTPVQDKVMKELLHVCKKVVVTVTID----- 232

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
                           N    THP Y L  L   L          G  +     R  ++ 
Sbjct: 233 -------------ERENPYTFTHP-YQLFALSKRLVT--------GLTALAKEERVEIVE 270

Query: 329 KSFLPPDTSDMRNTDILENKIP---------NIQKCFSDVALIEADNEREEAISIAIALR 379
              LP + +     +     +          +       ++L  A   ++E   +   +R
Sbjct: 271 PVCLPQNPAYRFRENPPLAFLEKHLFRYTTDSFSGEQESLSLHCAKMPKDETAFVMQEIR 330

Query: 380 MSLDENK---KKSALITADRNLARRVKLELTR-FGINIDISAGIPLSTTLHSSILTSLLN 435
             +       +  A+I  +         ++   + I I +     +        + SLL 
Sbjct: 331 HLVRIKGYRYRDIAIIAGNIATYADYMEKMAEVYTIPIFMDYKRSVLLNSFVEYIRSLLA 390

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
              +   + ++   ++  L  F   +  +                    I   K      
Sbjct: 391 MAEQNLTYESVFRFLRTGLTGFSREDIDILENYVIAM-----------GIKGYKKWNEKW 439

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
           + T    T +   +     E +   V ++  ++  +       T    T  +  + +  +
Sbjct: 440 VRTY---TGLSEEELEKVNEIRSEFVKMIQDVMSVLKKRRKTVTEITLTLHSFFMQEKLQ 496

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
             +   +    + +       + +  + +  +F K IE          E+  ++    + 
Sbjct: 497 EKLVKYEETFQENNEPALAKEYAQIYRIVIEIFDKFIELLGDEYLPLKEYCALLDAGFEE 556

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL- 674
             V         + +     +RL     L   G N+   P N A N  LS   +      
Sbjct: 557 AKVGVIPPGIDEVIVGDMERTRLKEVKVLFFVGANDVFIPGNQAGNGLLSEQDRKIFEAR 616

Query: 675 -----KTAEKYIGQAAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTD 726
                   ++ I        M     +  +  + S    +      + +LQ L  L    
Sbjct: 617 KIPLAPNGKEKIYIQKFYLYMNLTKPSEKVYVSYSKVSGDGKGIRPAYFLQDLKRLYPML 676

Query: 727 FFDNLKKR---------------------------GQCYL----------DWTRKLDYTT 749
             +  +++                              +L          DW   +D   
Sbjct: 677 HVNEEEEKKFTELELTKKAGITYIISGLQRRREEITDEWLELYTSYRKDEDWEGIIDNLI 736

Query: 750 KQPHYKRPKPFPPLEAQP------RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
           +   YK P+     +            S + +++     +A +    L+L      +   
Sbjct: 737 EAGFYKMPEDRLSKQMAEKLYGEKIEGSVTRLERFAACAFAHFLSYGLRLKERK--EYRF 794

Query: 804 DRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDSHFEKEN----LPPHI 852
           +  D G +FH  I    +                   L+++ +++               
Sbjct: 795 EAVDLGNIFHRAIEIFSRNLVKSGYTWTTLPKEVAEELIEESVETSITDYGNTVLYSSAR 854

Query: 853 DIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID--LL 908
           +        ++     +   ++  +         +              G  DRID    
Sbjct: 855 NEYMITRIKRMMKRTVWALAKQLEKGDFVPSGYEVSFG----------KGKIDRIDIYET 904

Query: 909 KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIR 964
           +      + DYKTG       +    +  QL++           +   +KV  A LFY +
Sbjct: 905 EDRVYVKVIDYKTGTKTFSLASLYHGLQLQLAMYMNMAVELERRKQPEKKVVPAGLFYYQ 964

Query: 965 LKQKFKIDCITNDKKKYSADELS 987
           +K     D I +  ++   +E  
Sbjct: 965 MK-----DPIIDKVEEDKWEETV 982


>gi|95929584|ref|ZP_01312326.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
 gi|95134281|gb|EAT15938.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
          Length = 881

 Score =  184 bits (466), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 101/701 (14%), Positives = 218/701 (31%), Gaps = 87/701 (12%)

Query: 367  EREEAISIAIALRMSLDENKKKSALITADRNLARR-----VKLELTRFGIN-------ID 414
            E EE ++ A   R  L++     A++  +    +         EL+R            +
Sbjct: 219  ESEELLAAARWARQCLEQQVGIVAVVVPELERLQGEVQTIFSRELSRSAYPDRVPMDTFN 278

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
            +S G PL+     +   +LL       DF  ++ L++ P    G  E             
Sbjct: 279  MSLGYPLADQGMVAAALTLLQLQDS-LDFDQLSYLLRCPWFAGGIDEWQQRAL------- 330

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                                  A       V     RL  + +    +L          L
Sbjct: 331  ----------------FERQLRADNVLRLSVSDLLYRLRHQPQAPRGMLH---------L 365

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
            V            ++ +DW +   + LQ +       L +  ++        + + +   
Sbjct: 366  VEQLQRWQGEHDKIAPADWVEHLNSFLQQIGWPGDASLDSRGYQVFAAWQDKVLTPVARL 425

Query: 595  GSC-IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
            G         + +  + RL      +PK +    L I+G LE+  L FD L L G  E V
Sbjct: 426  GVVSATMTPGQLVSWVCRLSREILFQPKAQDH-RLQIIGLLETAGLTFDALWLCGAGEQV 484

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAE--KYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT 710
            +P   + NPFL   +Q    +  ++       A    E      + ++ + +  +   P 
Sbjct: 485  FPGGLSFNPFLPVALQKQSQMPHSDLFHEADYARLLLERLQHAAQQMVISYAQNKEERPC 544

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
              S +L +L            +  G  +   +            + P        +P + 
Sbjct: 545  RCSPYLSQLPW------QQCQETDGVDWNGVS-----LEAIDDCRAPSLSSAQLEEPLSG 593

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--INKNT 828
                +K+    P+  +    + +  +   +       RG L H ++ ++ +         
Sbjct: 594  GTGLLKEQAQCPFKAFIHYRVGVRALDVPQPGLTSRRRGDLLHRVLQQVWQCLGSHAGLL 653

Query: 829  PEINHLMKQIIDSHF-------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
               +  ++++I                   +  + +     +   +L+ E + +    + 
Sbjct: 654  DYDDTALRELIAEQVVAVLDGTRFAGHERALLAVEKQRLESLVLEWLDVERQREPFNVQS 713

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA-QKLIDPQLSLE 940
                  +  ++   + L    DRID+   G + + DYKTG     +   + L++PQL + 
Sbjct: 714  VEE---RQQLQVGPLRLNTIPDRIDMTADGRMIVLDYKTGQISVGDLVGEVLLEPQLPVY 770

Query: 941  AAALKAGSFSQIDCRKV--ANLFYIRLKQKFKIDCITN--------DKKKYSADELSEKS 990
            A     G  + I   +V      +  +  + ++              +   +  EL +  
Sbjct: 771  ALHGVQGDVAAISFAQVRHGRCAFKGVSAEDEVLPGVRSVERSRGVKEGIANWTELIDHW 830

Query: 991  LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031
             ++       + +G+        +  K     +   L R+ 
Sbjct: 831  RQHAQCTAQAVVDGDATVTP---IHAKVCQFCDLKGLCRID 868


>gi|118466579|ref|YP_883296.1| helicase, UvrD/Rep family protein [Mycobacterium avium 104]
 gi|118167866|gb|ABK68763.1| helicase, UvrD/Rep family protein [Mycobacterium avium 104]
          Length = 1042

 Score =  184 bits (466), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 114/1022 (11%), Positives = 257/1022 (25%), Gaps = 135/1022 (13%)

Query: 59   ELRSEFIEITG-KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL 117
             L +  +   G   +   P+++++              +    P      RL+  A    
Sbjct: 68   ALTTALLRSAGAGPAVREPLVRTVHGYAYAVLRRAAERAGEAPP------RLVTSAEQDA 121

Query: 118  IWRNKLPDIIKDL--YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
            I R  L   + D      +  +      +    A  L +++          + L  L   
Sbjct: 122  IIRELLAGDLADGPRAATAWPAALRPALSTAGFATELRNLLARCAERGVDPQALERLGRR 181

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
                 W+ A  F +   +              V    A +   A        G   + G+
Sbjct: 182  CRRPEWVAAGQFARQYEQ--------------VMLLRAAVGTAAPEATTPALGAAELVGA 227

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
                 A    +          +++       P A        +    +          + 
Sbjct: 228  ALEAFAVDAELLAAERGRIRVLLVDDAQQLDPQAARLVRVLAAGADLALIAGDPNQAVFG 287

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQK 354
                          +      +  +                   R        +I     
Sbjct: 288  FR------GGDPGSLLDGAAPAVTLTTSHRCAPAVARAVSGVAGRLPGSSAGRRIEGAGP 341

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFG 410
                VA+  A +   EA +IA ALR +   +     + + ++ +      R+   L   G
Sbjct: 342  GEGSVAVRLAASAHAEAAAIADALRRAHLVDGVPWSQMAVIVRSVPRAGARLPRALAAAG 401

Query: 411  INIDISAGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            + +   A   PL+       L ++L A     D      L+  P+ +         R   
Sbjct: 402  VPVTAPAASGPLAEQPAVRALLTVLLATADGLDGQRALALLTGPIGRVDPVSLRQLR--- 458

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
               L      +   D  +L    L   A                         +   +  
Sbjct: 459  -RNLQRANAGRPPGDFAELLVEALTGTAP-------------PPGALFRALRRVRAVLDA 504

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                    +  +         S   +  ++  +       +   +L        ++  + 
Sbjct: 505  AGRCHRDGQDPRYILWAAWHRSGLQRRWLSVSERGGPAAAQAGRDLDSVTALFDITDDYV 564

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                      A+    ++ +  L         +  +  + +L    +    +D +++ GL
Sbjct: 565  -----SRTSGASLRGLVEHVAALQLPGAGPVPVATAEQVSVLSAHAALGREWDFVVIAGL 619

Query: 650  NEGVWPKNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
             +G+WP    +   L            S        L   E+ +  AA            
Sbjct: 620  QDGLWPNTVPRGGVLGTQRLLDVLDGVSADASVRAPLLAEERRLLVAAMGRARQRLLVTA 679

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL-------------------------K 732
            + + +   ++   + S +   +    G D                               
Sbjct: 680  VDSDTDGSDHEAALPSPFCYEIAQWAGEDVETAALQPVSAPRVLSAAALVGRLRGVVCAP 739

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS---------------FSEIKQ 777
                  LD         +      P   P         S                S ++ 
Sbjct: 740  DGAVDELDRRCAATQLARLAQAGVPGADPASWHGLIPVSTAEPLRGGGDVVTLTPSTMQT 799

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L + P    A R    D           +  G++ H +I      + +++  E+   + +
Sbjct: 800  LTDCPLRWLAERHGGTDPRDLR------SAIGSVVHALI-----AQPHRSPAELVAELDR 848

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESI 894
                                     +  +F +     + ++ ++ V +     +   +  
Sbjct: 849  AWRHLPFAAQWHSD---NELARHRAMLEAFAQWRANTRGALTEVGVEVEIDGTLSTGDGR 905

Query: 895  GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF-SQID 953
             + L G  DR++   +G + I D KTG  P  +   +    QL+L   A+  G   +   
Sbjct: 906  EVRLRGRVDRLERDAAGRLVIVDVKTGKTPVSKDDAQQHA-QLALYQLAVAHGLLGAAGG 964

Query: 954  CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISH 1011
              +      + + +      +  ++     D L+  +     E +    +      FI+ 
Sbjct: 965  DAEPGGARLVYVGKAAASGVVEREQ-----DPLTAAAADQWREALRRAADATAGPQFIAR 1019

Query: 1012 LR 1013
              
Sbjct: 1020 RN 1021


>gi|166032802|ref|ZP_02235631.1| hypothetical protein DORFOR_02517 [Dorea formicigenerans ATCC 27755]
 gi|166027159|gb|EDR45916.1| hypothetical protein DORFOR_02517 [Dorea formicigenerans ATCC 27755]
          Length = 1134

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 113/931 (12%), Positives = 251/931 (26%), Gaps = 134/931 (14%)

Query: 151  NLADIIDIIETEEKKWEDLHAL--KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
             +  ++   +  +   E+L  +     +    +    D L++    + + L +   +   
Sbjct: 121  EVKSVLSEFDQYDIGEEELRQMKAVAGENSRLYYKLQD-LEVLYIGFKKYLEDRFVT--K 177

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
               +  +    +      +  I++ G TG  P   RL+  +       IV   +D     
Sbjct: 178  EELLDALCRVVKGSDILKESTIVLDGFTGFTPVQNRLLGELLEVCREVIVTVTMDDRENP 237

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             ++                   H   SL ++     +  E+   L       +  +  + 
Sbjct: 238  YVYKH--------PYQLFALGKHTVTSLIQIAAERKVSVEEALCLYERPLYRFCDNSAME 289

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-- 386
                                    ++    V +  A N REEA+  A  +R  +      
Sbjct: 290  FLERNIF----------RYSKECYKEKQGAVRIHVARNPREEAMKAAGRVRNLVRTKGYR 339

Query: 387  -KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
             +   +I ++  +           + I + +     +        + SLLN +     + 
Sbjct: 340  YRDIGVIVSNMEVYGDDLGQAFDIYEIPVFMDHKRSILLNSFVEYIRSLLNMVKDNFSYE 399

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
            ++   ++  L+ F + E                    +  I   K      I   K    
Sbjct: 400  SVFRFLRTNLSGFTYGEVDELENY-----------VIALGIRGYKKWQESWIRRPKYLEE 448

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                    +       V  VD ++  +        +         + +  +L +      
Sbjct: 449  ENLEILNHNRV---RLVEKVDTLVYVLRQRSKTVKDVTMALYEFMVREELQLKLQRQSEA 505

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
              +         + +  + L  LF K +E          E++ ++   ++   V      
Sbjct: 506  FQEAGELALAKEYSQVYRILIELFDKFVELLGDENVTMDEYLKLLDAGLEEARVGVIPPG 565

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL------KTAE 678
               + +     +RL +   LI  G N+   P    ++  L+   +              +
Sbjct: 566  IDQVVVGDMQRTRLKDIKALIFVGANDTFLPGALIRSGLLTERDRDKFATGKIHLSPGGK 625

Query: 679  KYIGQAAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            +   +      M     +  L    S    +      S  +Q +  L      ++ +K+ 
Sbjct: 626  EKAYEQKFYLYMNLTKPSETLDIYYSKVSADGKSIRPSYLIQEMQRLFSGLEIEDEEKQA 685

Query: 736  QCYLDWTRKL--------------DYTTKQPHYKRPKPFPPLEAQPRTY----------- 770
                +WT KL                   Q  Y   K  P  + +               
Sbjct: 686  FSAQEWTPKLGMQKVIRGFQDGNAMDQEWQELYSWYKRQPQWQYRVEELMKSGFYTRPAD 745

Query: 771  -----------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                             S + I++     +A +    L+L        +    D G + H
Sbjct: 746  GLTKEVAKQLYGEHFQDSITRIERFSACAFAHFLTYGLRLRERQT--YEFQPLDLGNVCH 803

Query: 814  NIITELIKKRINK---NTPEINHLMKQIIDSHFEKEN--------LPPHIDIIWRHLFHK 862
            + +    +K   +    T       ++ ID   E                +        +
Sbjct: 804  SALEYYSRKLKEEHLSWTEIEEEKRQEYIDDSVEHAISDYGNSVLYSSARNEYMIERMKR 863

Query: 863  ISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL--LKSGFVD-ITD 917
            +     +   ++        +   +  +           G  DR+DL   K      + D
Sbjct: 864  LLTRTIWALTKQLEAGDFVPVAYEMRFE----------NGKIDRVDLCKDKDKVYVKVLD 913

Query: 918  YKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRLKQKFKI--- 971
            YKTG            +  QL +   A    +       +V  A +FY RL         
Sbjct: 914  YKTGSKAFDVVALYHGLQLQLMVYMDAAVKMTQKHYPDSEVIPAGVFYYRLNDPLVEKKV 973

Query: 972  --------DCITNDKKKYSADELSEKSLKNL 994
                      +  + K      L +++L++L
Sbjct: 974  VGEEEEIWQKVLKELKVDGVMNLKDETLEHL 1004


>gi|254912828|ref|ZP_05262840.1| ATP-dependent nuclease [Listeria monocytogenes J2818]
 gi|293590825|gb|EFF99159.1| ATP-dependent nuclease [Listeria monocytogenes J2818]
          Length = 1157

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 123/965 (12%), Positives = 276/965 (28%), Gaps = 124/965 (12%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L  +  L +     +      +LA++   ++ EE   ED+                  
Sbjct: 97   AALDQKDKLKIFSRATSRKGFYSDLANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKVHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + +  + + E L   +        + L+  +        +  I+I G T        ++ 
Sbjct: 156  ISLIYQKYEELLA--DKFLENEDYLRLLAEKIADSDYLNQTEIVIDGFTSFSKQELTVIG 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   +   L+      I + + E S    S+         Y+L +L      + 
Sbjct: 214  ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K               ++ ++        +N                ++ + +A+N 
Sbjct: 265  EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311

Query: 368  REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   IA  +R         +  A++T +  +     +  +  + I   I     ++  
Sbjct: 312  RAEIEGIAREIRQLALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         +  L  R  + LE   L     + 
Sbjct: 372  PFIEFIRSSLDAILFNCKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431

Query: 484  DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
               + +   + R     +   +P    +  +     E+  L+V+ +      L   KT  
Sbjct: 432  WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 491

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599
                      +               E +    L    E+   ++S L  + +E      
Sbjct: 492  EFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISVLLDEFVEVLGEET 551

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   + +II   +D             + +     ++LL+   +   G+N+GV P    
Sbjct: 552  LDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611

Query: 660  KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI--- 708
                 S   +  L         +A+  IG+            +  L  +    +      
Sbjct: 612  DKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671

Query: 709  --------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-------- 746
                              S +L    +L   +    ++ +       T +L         
Sbjct: 672  SESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYTL 731

Query: 747  YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778
             +     Y                             +      L  +    S S +++ 
Sbjct: 732  SSVWWDAYNSYFENEKESIMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRMEKF 791

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829
             +  +  YA+  LKL+   HF+      D G +FH  +  +  +    N           
Sbjct: 792  FSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLTEEEC 849

Query: 830  -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885
             ++  L    +    + E L         ++   +I      + +E+   S+   + + +
Sbjct: 850  KQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909

Query: 886  PAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQK 931
               +  +   +           L G  DRID+ +      + I DYK+  +         
Sbjct: 910  DFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEVYY 969

Query: 932  LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  Q+      +   +   I    + A + Y  +  ++         +  + +      
Sbjct: 970  GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKSSK 1029

Query: 991  LKNLI 995
            +K LI
Sbjct: 1030 MKGLI 1034


>gi|153855192|ref|ZP_01996376.1| hypothetical protein DORLON_02390 [Dorea longicatena DSM 13814]
 gi|149752361|gb|EDM62292.1| hypothetical protein DORLON_02390 [Dorea longicatena DSM 13814]
          Length = 1112

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 117/919 (12%), Positives = 245/919 (26%), Gaps = 128/919 (13%)

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLL--AADFLKIASKYWTERLVELNASSPV 208
            +  +I      +   E+L  +  +       L      +++    + + L E   +   
Sbjct: 121 EVKSVISEFTQYDIGEEELDDM-IDSLDEESRLYYKLKDIRLLYDGFQDYLRERYIT--K 177

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              + ++  E           +++ G TG  P   RL+  +  +  G  +   +D     
Sbjct: 178 EELLDVLSREVRESELLKNSTVVLDGFTGFTPVQNRLILELMKYCKGVWITVIMDERENP 237

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             +                   HP          +       +       E         
Sbjct: 238 YSYR------------------HPYQLFGLSKQMVTTLISLAREEHIAVEEPVCLYGYPV 279

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---EN 385
           K F           +I        +K   ++ +  A N  EEA+++A  +R  +      
Sbjct: 280 KRFEKNKELAFLERNIFRYGAGTYEKEVKNLGIHVARNPGEEAMAVAEEIRKLIRKERYR 339

Query: 386 KKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
            ++  +I +D N+           +GI + +     +        L SLLN   K   + 
Sbjct: 340 YREIGVIVSDMNVYGDYLEQAFETYGIPVFMDHKRSILLNSFVEYLRSLLNMAEKNFSYE 399

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
           ++   ++  LA F + E         LE   +      Y     + +   +   ++    
Sbjct: 400 SVFRFLRTNLAGFSYEEVD------ELENYVIGLGIRGYKDWQNRWIRRMKGMEEEELER 453

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
           + H++ ++ E+   L  +L           +              +    +      +  
Sbjct: 454 LNHYRVQMVEKVDNLMFVLKQKRKTVKDITLAVYEFMVQENIQERLKKTEEEFHEAGELA 513

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                       + +  + +  LF K +           E+  ++   ++   V      
Sbjct: 514 LA--------KEYSQIYRIIIELFDKFVALLGEEPVGLSEYCKLLDAGLEEARVGVIPPS 565

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA------- 677
              +       +RL +   L   G N+   P    +   LS   +               
Sbjct: 566 VDQVVAGDMQRTRLKDIRALFFVGANDCFLPGALLRTGLLSERDREKFRQADHALSAGGK 625

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRL---------------- 719
           EK   Q  + +         +     +   +      S  +Q L                
Sbjct: 626 EKAYVQKFYLYMNLTKPSEKLKVYYSKVSADGKALRPSYLIQELLRLYPDVKVRDEDEKE 685

Query: 720 ------------LVLGGTDFFDNLKKRGQCY-------LDWTRKLDYTTKQPHYKRPK-- 758
                         L       NL    Q           W  K+D      +Y+RP+  
Sbjct: 686 LVQKELTEKTGVKYLIRGLQEKNLDVTWQELYTWYQKDPKWKEKVDELLTAWYYRRPEDP 745

Query: 759 ----PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                   L  +    S + +++  +   A +    L+L        +    D G + H+
Sbjct: 746 LSESVAKQLYGENFEGSITRMERYASCACAHFLAYGLRLKERS--VYEFKAVDLGNVCHS 803

Query: 815 IITELIKKR--INKNTPEINHLMKQIIDSHFEKEN--------LPPHIDIIWRHLFHKIS 864
            +    KK       T       K++ID   E                +        ++ 
Sbjct: 804 ALELFSKKASEAGGWTILTEEQRKELIDECVEAAITDYGNSVLYSSARNEQLIVRMKQML 863

Query: 865 HS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL--LKSGFVD-ITDYK 919
               +    +            +              G  DR+D+   +      + DYK
Sbjct: 864 ERTVWALTNQLKAGDFVPEAYELRF----------FGGKIDRVDVCETEEQVYVKVMDYK 913

Query: 920 TG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRLKQKFKIDCITN 976
           TG            +  QL +   A       +   ++V  A +FY R++          
Sbjct: 914 TGSKAFDIIALYHGLQLQLMIYMDAAIEFQKKRHPEKEVVPAGVFYYRIQN-------PI 966

Query: 977 DKKKYSADELSEKSLKNLI 995
             K    +E  +  LK L 
Sbjct: 967 VDKTKDKEEAEQAVLKQLK 985


>gi|220913224|ref|YP_002488533.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
 gi|219860102|gb|ACL40444.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
          Length = 1115

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 124/1046 (11%), Positives = 260/1046 (24%), Gaps = 138/1046 (13%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
            AP +     ++ + +     +              + I  PT+ A   LR  F     + 
Sbjct: 89   APGTGKTTVLVESAVERVHRDGLDPAG--------ILILAPTRLAADFLRDRFTARLDRS 140

Query: 72   STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
             +  P  ++      +              P++   RLL      LI +  L        
Sbjct: 141  LSTTP-ARTWASYAFDLIRRAKAEGI---IPLARPPRLLSGPEQDLIIKELLEGHRLPGL 196

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                 +            + +  + D I    +   DL  L        W+ AA      
Sbjct: 197  ELPWPADLGGALETRGFRQEVRQLFDRIIESGRTPADLAELGKACGRQDWIAAAALYSEY 256

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLM 246
                  R+ E  A  P G   A  +   +        +     I++     + PA   L+
Sbjct: 257  RDVLDLRMPE--AFDPAGIITAARQIFQDAPEFLAAERQRLQLILVDDIQEANPAVYELL 314

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
               A+   G   L           +               +           L     + 
Sbjct: 315  ---ADIAAGKDCLVTSSPDTVVQGFRGARPDLVAELPRLLSPDATVLER--PLWHAHRLA 369

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                +    V+  +  R+                   +              V      +
Sbjct: 370  PAVAEAWLGVAGRISQRA----------------GGQLSRRLEQTAGDAPGRVEAHLVPS 413

Query: 367  EREEAISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDIS-AGIPLS 422
               E   +A  +        +     A+I  +      ++  L+  GI + +  A   + 
Sbjct: 414  AVHELRYVAQRILDQHIGQGRSLTDVAVIVRNGGQVSELQRYLSGQGIPVRVPVAESAVR 473

Query: 423  TTLHSSILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
              +    L                A  +L+   +      E    R     E +   G +
Sbjct: 474  DEVAVRPLLDAYAIALDTALLTPEAAVSLLTSRIGGATPLELRRLRQSLRREELTAGGGR 533

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
             S  ++    L    + +           +R+ +  ++ A                    
Sbjct: 534  GSDSLLVEALLEPGALGSLGIEGRAARRTARMIQSGRQAARQ----------------PG 577

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
             N+     ++   T L+    +                +    L     + ++       
Sbjct: 578  ANAESVLWALWSATGLSAAWTETALAGGPHGARADRDLDAMMALFHTAERYVDQMPGAGP 637

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                   ++ + +  +T+  + +    + I+    +    +  +++ GL EGVWP    +
Sbjct: 638  E-QFLEYLLNQELPMDTLAARAQVDDAVEIMTPASAAGRQWPVVLIAGLQEGVWPNTRLR 696

Query: 661  NPFL-------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
               L             S  +Q D   +  +    +        +    L+   ++   +
Sbjct: 697  GELLGSTLYADAVEHGTSYALQRDPLSRLRDIRYDELRSFSTAVSRAEELLICTAVASED 756

Query: 708  IPTIASRWLQRLLVLGGTDFFDN--LKKRGQCYLDWTRKLDY------------------ 747
                 S +L     L   +        +R         +L                    
Sbjct: 757  --DQPSSFLDYAAPLAPGEDARGFTAVERPMTLRALVAELRQHAQLEGAQAQEAARVLAG 814

Query: 748  -TTKQPHYKRPKPFPPLEAQPRT-------------YSFSEIKQLINDPYAVYARRILKL 793
                +P      P      QP T              S S+++ +   P   + +     
Sbjct: 815  LAAAEPPVPGAHPDSWWGIQPLTSTDAVVPPGSTVFVSPSKVESVQKSPLDWFVQAAGGE 874

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                           GTL H I  ++ +    +   E+              ++      
Sbjct: 875  AATDF------ARSLGTLVHAIAQDMPEASGQEYVAELARR-----WPQLGMKDNWEG-- 921

Query: 854  IIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIE--------SIGIHLTGFADR 904
             +       +     ++      S    + V     +A+              L G  DR
Sbjct: 922  RLDHQRAEAMVRKLAQYVLVMRGSGRSLLGVEQDFDVALGEVLLDDASPREAVLRGQVDR 981

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF---SQIDCRKVANLF 961
            +++   G + I D KTG     +T +    PQL    AA+ AG F   S           
Sbjct: 982  LEIDGEGRLVIVDLKTGKRQPGKT-ELASHPQLGAYQAAVLAGGFGDGSDTGQTLPGGAV 1040

Query: 962  YIRLKQKFKIDCITNDKKKYSADELS 987
              +L    K   +   +     D  +
Sbjct: 1041 LAQLGTTAKSPAVQEQEPLDPQDNWA 1066


>gi|224499010|ref|ZP_03667359.1| hypothetical protein LmonF1_04633 [Listeria monocytogenes Finland
            1988]
          Length = 1157

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 122/965 (12%), Positives = 275/965 (28%), Gaps = 124/965 (12%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L  +  L +     +       LA++   ++ EE    D+                  
Sbjct: 97   AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIGDMVK-SATNLSTSVNNKVHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + +  + + E L   +        + L+  +        +  I+I G T        ++ 
Sbjct: 156  ISLIYQKYEELLA--DKFLENEDYLRLLTEKIADSDYLNQTEIVIDGFTSFSKQELTVIG 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   +   L+      I + + E S    S+         Y+L +L      + 
Sbjct: 214  ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E+ K               ++ ++        +N                ++ + +A+N 
Sbjct: 265  EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311

Query: 368  REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   IA  +R         +  A++T +  +     +  +  + I   I     ++  
Sbjct: 312  RAEIEGIAREIRQLALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                 + S L+AI     +  I   VK         +  L  R  + LE   L     + 
Sbjct: 372  PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431

Query: 484  DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
               + +   + R     +   +P    +  +     E+  L+V+ +      L   KT  
Sbjct: 432  WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 491

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599
                      +               E +    L    E+   ++S+L  + +E      
Sbjct: 492  EFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGEET 551

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   + +II   +D             + +     ++LL+   +   G+N+GV P    
Sbjct: 552  LDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611

Query: 660  KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI--- 708
                 S   +  L         +A+  IG+            +  L  +    +      
Sbjct: 612  DKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671

Query: 709  --------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-------- 746
                              S +L    +L   +    ++ +       T +L         
Sbjct: 672  SESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYTL 731

Query: 747  YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778
             +     Y                             +      L  +    S S +++ 
Sbjct: 732  SSVWWDAYNSYFENEKESIMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRMEKF 791

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829
             +  +  YA+  LKL+   HF+      D G +FH  +  +  +    N           
Sbjct: 792  FSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLTEEEC 849

Query: 830  -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885
             ++  L    +    + E L         ++   +I      + +E+   S+   + + +
Sbjct: 850  KQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909

Query: 886  PAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQK 931
               +  +   +           L G  DRID+ +      + I DYK+  +         
Sbjct: 910  DFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEVYY 969

Query: 932  LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  Q+      +   +   I    + A + Y  +  ++         +  + +      
Sbjct: 970  GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKSSK 1029

Query: 991  LKNLI 995
            +K LI
Sbjct: 1030 MKGLI 1034


>gi|329924036|ref|ZP_08279299.1| ATP-dependent nuclease subunit B [Paenibacillus sp. HGF5]
 gi|328940875|gb|EGG37183.1| ATP-dependent nuclease subunit B [Paenibacillus sp. HGF5]
          Length = 1176

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 109/1032 (10%), Positives = 264/1032 (25%), Gaps = 137/1032 (13%)

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
              +   G +  +   + S   +           +      +S   + + L +++   + +
Sbjct: 50   ALVNAGGIRGMMRAQVLSFRRLAYRVMQETGGAA---KVAISEEGKRMLLYKILRRRKEE 106

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKY- 177
            L                            L+++   ++          E L  + +    
Sbjct: 107  LHMFGASGEQH-------------GFVGKLSELYTEMKRYCIDASCVEEQLGQMVSGSGN 153

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
                    + +    + +   +            ++L     E         I I G  G
Sbjct: 154  SPMLRRKLEDIVTVFRDFELEISRFY-MDEEDTLVSLAEGVTESEYIKRAD-IWIDGFHG 211

Query: 238  SIPATARLMSTVANHPNGAIVLPGLD-CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
              P   R++  +  H     +   LD  +    + + +        +            L
Sbjct: 212  FTPQEYRVLREIIAHAKRVTIALTLDKPYKNGTVPHELDLFHPTAVTYIK---------L 262

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              ++D + ++ E      +V       SM+                D   +   +  +  
Sbjct: 263  KGIIDEIGLEAEHRILHPDVLPRFQESSMLAHLERGYDRKRRWAEPDEGPDTASSPNRGR 322

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGIN 412
              + L  A + R E       +     E      + +  +    +    +      +G+ 
Sbjct: 323  KGLLLHAASHRRAEIEGALREMLRLAQEEGARYREMAVFVRNMGDYEHLMGPLFREYGVP 382

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
              +              + S L+ I +   +  +   VK  L              + LE
Sbjct: 383  YFLDQKRSELHHPLVEFIRSALDVIGRRWRYEDVFRCVKTDLLLPLDGSLT-REDMDRLE 441

Query: 473  LVALRGNKNSYDIMDLKSL--VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
               L          D +    +      +  +           E  +++    +    + 
Sbjct: 442  NHVLASGIQGTRWTDGRPWKGIPSLSLEEGESEIRNQDGMAAIEYARKVITEPLHAFEKR 501

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +    +      +    L      +     L    LD  R        +    +  L  +
Sbjct: 502  MKKAASAMDQSTAVYRLLEECAVPEKL-ELLSRAALDAGRPEEAREHRQVWGAVLGLLDQ 560

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            I+E     K +   +  ++   +    +         + I     +R        L G+N
Sbjct: 561  IVEMMGAEKLSTELFTGVLGTGLTEMKMALVPPSLDQVLIGSMDRTRTGGVKYAFLLGIN 620

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF--------EMANGTRHLIYTR- 701
            +GV P     +  L+   +  L  +  E     +             + + ++ L  +  
Sbjct: 621  DGVLPAQFQDDGILTEPERVRLEDRGLELAPSISRRLLDERFLIYNALTSASKQLWVSYP 680

Query: 702  SLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH------ 753
            +  +   P + S  ++ L ++     +        GQ  L+         K         
Sbjct: 681  AADDEGKPLLPSEVVRHLKMMFQLEEELLFPRPHAGQSALEQGGYAVRPDKTLAYLAGRL 740

Query: 754  --------------------YKRPKPFPPLEAQPRTYS---------------------- 771
                                 ++P   P L     + S                      
Sbjct: 741  RDWRNGEEIPDLWWHVYNWYAEQPGLRPRLTTMLSSLSYRNEARPLKLETSRQLYGTKLR 800

Query: 772  --FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII-------TELIKK 822
               S +++ +  P++ +A   LKL             D G LFH  +           + 
Sbjct: 801  TSVSRMERFVACPFSHFASHGLKLK--DRQLYRLQAPDIGQLFHAALSSMAVKFQSQHRS 858

Query: 823  RINKNTPEINHLMKQIIDSH---FEKENLPPHIDIIWRHL-FHKISHS--FLEHEEKIQS 876
              +    E     +  +D      + E L       +       I      +  E+  + 
Sbjct: 859  WGDLTAEECLREAEATVDRLAPMLQGEILLSSKRYGYISRKLKNIVGRASVILGEQARRG 918

Query: 877  SIEKIFVNIPAK---------MAIESIG-IHLTGFADRIDLLKSGF---VDITDYKTGDN 923
              E I + +              + +   + + G  DR+D+ +      + + DYK+   
Sbjct: 919  KFEPIGLELDFGPGKPLPPLAFELPNGTKMEIVGRIDRVDMARGEHGIMLRVIDYKSSQK 978

Query: 924  P-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKY 981
              +       +  Q+      L   +   +  +   A   Y  +      D +       
Sbjct: 979  DLRLHEVYYGLSLQMLTYLDVLLTFAEEWLGEQALPAGTLYFHV-----HDPVLQSANGM 1033

Query: 982  SADELSEKSLKN 993
            + ++ +E+ LK 
Sbjct: 1034 TPEQAAEELLKR 1045


>gi|317132411|ref|YP_004091725.1| hypothetical protein Ethha_1457 [Ethanoligenens harbinense YUAN-3]
 gi|315470390|gb|ADU26994.1| hypothetical protein Ethha_1457 [Ethanoligenens harbinense YUAN-3]
          Length = 1128

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 109/999 (10%), Positives = 258/999 (25%), Gaps = 130/999 (13%)

Query: 59  ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118
           E+    ++  G  + +   + S   + +  F      +      +    R+L ++     
Sbjct: 42  EMERALLQTVGPAACLHVEVLSFSRMAQRVFGLCGGAAG---RAIDGCGRVLVMSMAAKQ 98

Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
             + L    +              A++   AK + + +  ++      + L A   +   
Sbjct: 99  VADLLQVYHRQ-------------ADSPAFAKAMVEAVAELKYCGVAPDMLAAAGGQMDD 145

Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238
                    L +  + +      L +    G      + E           ++I    G 
Sbjct: 146 DALAGKLADLSLLLQTYDALCSRLFSDDLDGIARLAEKLEDCLF--FEGKTVVIDAFKGF 203

Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
                R++  +    +   V    D          +                     L  
Sbjct: 204 TAPQKRVLGHILRQSDDVYVTLCADRLEDAEQGLGLFSPVQKTAGE-----------LLH 252

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
           L   L++       LG                             +   +        S 
Sbjct: 253 LARKLEVAVAKPVLLGPPRR-------------FAAPEIAALEERVFRPEAAPFNGEASA 299

Query: 359 VALIEADNEREEAISIAI---ALRMSLDENKKKSALITADRNLARRVK-LELTRFGINID 414
           + ++ A N  EE   +A     L  + +    +  +I+    L   +      ++GI + 
Sbjct: 300 LRIVSAGNLYEEVQFVAREIARLVQTGEARYDEMVVISRGLPLYNGILDPVCNKYGIPLF 359

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
           + A   +S     + ++  L  +       A+   +K  LA     E            +
Sbjct: 360 LDARRDVSAHPLMAFVSGALELLAGNFRQEAVLRYLKTGLAGLSTVEIAQLENYLYTWNL 419

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
             R    +                      +   + R+ E  + LA  L           
Sbjct: 420 QGRTAWQTEWTDHPDGFGSTAQPDDARLRTLNALRLRVMEPVETLAAALEQ--------- 470

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                   +    L+     +           +  ++L +  + +    L  +  ++   
Sbjct: 471 ADGAGQAQALYAFLTGMQVERQMAEACARFAQNGEQELED-EYRQVWDKLIGMLEQMAAV 529

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                    E + ++   I    +         +        R  +   + + GL +GV+
Sbjct: 530 LGERAVTVPELLRMLRLAIGATELAHIPPTLDQVTAGDAERIRAGDAAYVFVIGLADGVF 589

Query: 655 PKNTAKNPFLSRVMQSDLNL-----KTAEKYIGQAAHDFEMA--NGTRHLIYTRSLRENN 707
           PK  +         +  + L       AE+ + +       A    +R L       +  
Sbjct: 590 PKTGSGGILTDSEREQLIRLGLELSPPAEERLVEERFIAYQAFACASRALYLCCPRSDTK 649

Query: 708 IPT-IASRWLQRLLVLGGTD-----------------------------------FFDNL 731
                +S +L ++  L                                            
Sbjct: 650 GKVIQSSPYLAQVQALFPHAMRCDASCGPLDAIWSGQSAFEQLASRFRERDGFSAALRAC 709

Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRP--KPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
            +         R L+   ++   +         L  +    S S ++      +  + R 
Sbjct: 710 FESRPEDAIRLRALERAAEKRPARLTDHAAARALFGERMHISPSRLEAYGQCRFLYFCRY 769

Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL---------MKQIID 840
              +  +P  + +    + GTL H ++  L++        E++           +    D
Sbjct: 770 --GMKALPRRRAELAAPEVGTLVHFVLEHLLQAHPGGQLAELSRAQLEEETGLLLTDFAD 827

Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK--IQSSIEKIFVNIPAKMAI------- 891
            +       P           +     ++       QS    +   +P  +         
Sbjct: 828 GYLGGLENKPERFKHLFLRLRETVLRLIDRLAAEFSQSRFVPVDFELPIGIDGEVPPTVL 887

Query: 892 ---ESIGIHLTGFADRIDLLKSGF---VDITDYKTGDNPKK-ETAQKLIDPQLSLEAAAL 944
              +   I + G  DR+D+LK+G    + + DYKTG    +       ++ Q+ +    L
Sbjct: 888 PLQDGGAIAVEGKVDRVDILKNGDRAYLRVVDYKTGSKSFQFADVLYGLNLQMFIYLFTL 947

Query: 945 KAGSFSQIDCRK--VANLFYIRLKQKFKIDCITNDKKKY 981
              +  +   R+   A + Y   +Q           ++ 
Sbjct: 948 CDQAAERYGVRELLPAGVLYFPARQPDVETPHGAAPEEV 986


>gi|308069948|ref|YP_003871553.1| ATP-dependent nuclease subunit B [Paenibacillus polymyxa E681]
 gi|305859227|gb|ADM71015.1| ATP-dependent nuclease subunit B [Paenibacillus polymyxa E681]
          Length = 1189

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/969 (10%), Positives = 260/969 (26%), Gaps = 129/969 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKK----WEDLHAL-KNEKYGMWWLLAADFLKI 190
            LSL     + +     L  +   ++          E L  +    +           + +
Sbjct: 109  LSLFKDSGDQLGFVDRLNTLFTELKQYGNDTRPVPEQLERMNAAGESTPILRGKLKDISL 168

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
              + +   L           ++   +     L       I + G     P   +++  + 
Sbjct: 169  IYEDFERELTLKYIDGEDTLRMLAEQIAESSL--VRGADIWMDGYRRFTPHEYKVVEQLM 226

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
             H +   V    +            +    +   + + +T+    L  + D L I+ +  
Sbjct: 227  LHASSLTVALTCNRSY------ESGQLPHELDLFHPSAATY--VKLKGMADELMIETQTQ 278

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC-----FSDVALIEAD 365
                +       R  +          + +RN + L  +   +++         + L  A 
Sbjct: 279  LLRPDPLPRFKERPALAYLEANFEHRTGLRNQEQLRMRQQKLREQWTEEQPEGIKLYAAA 338

Query: 366  NEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            N R E       +R    +      + +  +    +    V+    ++ + + +     +
Sbjct: 339  NRRAELEGAVREMRRLARDEGARYREMALFVRHIEDYEPWVEPIFKQYEVPVFLDQRRSV 398

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                   ++ + L+ + +   +  +   VK  L              + LE   L     
Sbjct: 399  LHHPLVELIRASLDIVQRRWRYEDVFRAVKTDLLLPLDGRVS-REEMDRLENYVLACGIQ 457

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV----DHILQCITPLVTY 537
                 D +        + +      + +   + +  EL   ++        + +    T 
Sbjct: 458  GSRWTDGRPWQAVPSLSLELEEQERNRRRDETLDLMELCRDVIVTPLRAFEKRVGKARTA 517

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                 +    L  ++        +     +  +        +    +  L  +I+E    
Sbjct: 518  LEKCEAVYLLLEDAEIGHKLDAFIHQ-AEEAGKPEQAKEHRQVWDAVLELLDQIVEMMGD 576

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
             + +   +  ++   +    +         + +  T  +R+       + G+NEGV P  
Sbjct: 577  ERLDTSLFAGVLETGLAEFRMGLVPPALDQVLVGNTDRTRVSGIQHAFVLGMNEGVMPAV 636

Query: 658  TAKNPFLSRVMQSDLNLKTAE-------KYIGQAAHDFEMANGT-RHLIYTRSLRENNI- 708
              ++  L+   ++ LN +  E       + + +    +       + L  + ++ +    
Sbjct: 637  FHEDGVLNEQERTALNERGVELAPDMTRRLLDERFLAYTALTSAGKSLWMSYAVTDEEGK 696

Query: 709  ---PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF----- 760
               P+   R ++ L               G  +        + ++       +       
Sbjct: 697  SLLPSELVRHVRHLFPSLDERPLAGYPLPGDAWTTQWEYASHPSEALPQLIAQLRHWRRG 756

Query: 761  -----PPLEAQPR----------------------------------------TYSFSEI 775
                 P  E                                              S S +
Sbjct: 757  GDILSPWWEVYNWYASQQGREKDKLRQLLTSLFYENHAEMQKETSRRLYGSKLRTSVSRM 816

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-------- 827
            ++ +  P++ +A   L+L             D G LFH ++ E+     N+N        
Sbjct: 817  ERFVACPFSHFASHGLRLKERQM--YRLKAPDIGQLFHAVLGEMAINLRNRNVSWGSLST 874

Query: 828  ---TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIF 882
                 E    ++++      +  +              I      +  E   + S E I 
Sbjct: 875  EECRQEAESTVERLAPRLQGEILMSSKRYGYILRKLKDIVSRASLILGEHARRGSFEPIG 934

Query: 883  VNIPA--KMAIESIGIHL--------TGFADRIDLLKSGF----VDITDYKTGDNP-KKE 927
            + +       +  +   L         G  DR+D+   G     + + DYK+     K  
Sbjct: 935  LELDFGPGQQLPPLSFRLDNGVVMEIVGRIDRVDV-AEGEKGLLLRVIDYKSSQKDFKLH 993

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
                 +  Q+      L   +   +      A   Y  +      + +       SA++ 
Sbjct: 994  EVYYGLSLQMLTYLDVLLNAAEGWLGETAYPAGTLYFHV-----HNPMLQSPNGLSAEQA 1048

Query: 987  SEKSLKNLI 995
             ++ LK   
Sbjct: 1049 RQELLKRFK 1057


>gi|284048670|ref|YP_003399009.1| ATP-dependent nuclease subunit B-like protein [Acidaminococcus
            fermentans DSM 20731]
 gi|283952891|gb|ADB47694.1| ATP-dependent nuclease subunit B-like protein [Acidaminococcus
            fermentans DSM 20731]
          Length = 1003

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 122/962 (12%), Positives = 250/962 (25%), Gaps = 151/962 (15%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD-FLKIASKYWTERLVELNAS 205
                +L  + D         +    +         L   D  L      ++  +      
Sbjct: 105  GFRDSLLGLFDEFSRNGLDPDTYQRILMNWNREGALRNKDMDLAKLYLVYSTLVSGQKLE 164

Query: 206  SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                      +   E      +     +      P   RL+  +       + L   D  
Sbjct: 165  DLSQSYARAAKVLEEGGSVPWQQC-FFSEFYQLDPVQLRLLKALGRCCPVEMGL-FYDPK 222

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
             P     T       +          P     + L  L  + +                 
Sbjct: 223  RPELSQVTEKIYGDLLGDGFQPVPEEPVKDKPEDLAALAREWK----------------- 265

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
                                             + L E  ++ +E      +++  L + 
Sbjct: 266  ----------------------PGAKCGLAADHIHLGEGASQEQEIRLALTSIKERLQDG 303

Query: 385  -NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
               ++  ++       + +     ++GI   +     L +      LT LL A  +  D 
Sbjct: 304  VQPEEILVLVRKLQDYQGLVRSFAQYGIPCRLPLPADLKSQPLPDFLTKLLAAAGEKWDL 363

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
                 L + PL                L     R N +        S     +A  +   
Sbjct: 364  SLWQALFRCPLM--------------ELLFQTDRENLDFLYTQAYFSSAGAFLAHVRRKE 409

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
             V                 LVD + Q  TP                   W +L      +
Sbjct: 410  LVSAGFW-----------DLVDFLQQDHTPEAWRDGLTEWLDRWQLARTWGQLHKEGKVD 458

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
            +   +       +  +   +L   + +  E  S +  +  +        +   ++     
Sbjct: 459  LDQVKLLAGTEDFVRKTLDSLVKTWEQCGEEKSALGLD--KIRTFWKDSLAQASLPLTPG 516

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----- 678
            +   + +    E +   F  + + G+ EG++P    ++   S   +++LN    E     
Sbjct: 517  EPRGIPVREAGEIQGAAFPYVYILGVREGMFPAVKRESWLYSDQERAELNALGLELSLTA 576

Query: 679  KYIGQAAHDF--EMANGTRHLIYTRSLRENNI---------------------------- 708
            + +    + F    A  +R L  +    E                               
Sbjct: 577  RALDTDRYFFGSAAALASRELHLSWYSDEEGGASPYITGLDHFYAPDSLPVTVYEADPDR 636

Query: 709  ---PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
               P + +  L     LG  +    L   G  + D T+      ++P        P +  
Sbjct: 637  CASPALLTNCLAEQEWLGPREKETLLAAVGTDFSDRTQSARRRWEEPDSPWNGTVPGVVK 696

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
            +P   S S +   +  P+A    R+ KL      +  P     G L H  +   +   + 
Sbjct: 697  KPLHLSASSLDAFLQCPFAALVSRVWKLVPWEEQEPWPAPDVVGNLLHQTLAAFLGNHLQ 756

Query: 826  KNTPE-----INHLMKQIIDSHFEKENLP---------PHIDIIWRHLFHKISHSFLEHE 871
                      +   ++Q+    F++ +            HI   +           L++E
Sbjct: 757  TGLEAKDREILEQELEQVYQGIFDRFHQEGKIPDSPLLDHIRERYGKELRTWLRGELDYE 816

Query: 872  EKIQSSIEKIFVNIPA----------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
             + Q  ++   V                 ++   +  +G  DRID        + DYKTG
Sbjct: 817  ARDQLGLKPWKVEWSFGREHSPWPALTRTVDGKKVWFSGQIDRIDSNG-KTWSLLDYKTG 875

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID--------- 972
              P  +   +    QL L   AL      ++D   +    Y++L    +           
Sbjct: 876  QPPTGQDILQGRAVQLPLYLEALAVLG--EVDPEAILGGGYVQLCSGERKGGIWDKAVKD 933

Query: 973  --CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
                    +     +  E + + + + V  ++ G+ P     R S           L R+
Sbjct: 934  AFPWMQKARPPEKKQALEAAQQAMDQAVREIREGKFP----ARPSGTCPGWCPARDLCRI 989

Query: 1031 AE 1032
             E
Sbjct: 990  GE 991


>gi|222150841|ref|YP_002559994.1| ATP-dependent nuclease subunit B [Macrococcus caseolyticus
           JCSC5402]
 gi|222119963|dbj|BAH17298.1| ATP-dependent nuclease subunit B [Macrococcus caseolyticus
           JCSC5402]
          Length = 1118

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 125/1001 (12%), Positives = 289/1001 (28%), Gaps = 147/1001 (14%)

Query: 58  QELRSEFIEITGKKS------TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL- 110
            E+          +        I P   +    +E+  + D ++  ++   + +  RL  
Sbjct: 16  HEIIERIKSQLKGQPLGDPIIMIAPRQSTFQ--IEQALSHDAMIKGSMRTAIYSFDRLFW 73

Query: 111 --------ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                      + I     ++         +  L    S +     ++ +A +I  ++  
Sbjct: 74  RLESEEGSTKLQHISNSGVEMLTYQILNEHKDELKRFQSTSAYFGFSQKMAAVISELKKY 133

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL-NASSPVGYQIALMRAEAEH 221
                D++ L  ++     +   D L    + +T    ++          +  +    E 
Sbjct: 134 NVTPSDVYTLLGKEMD---VRTKDKLHDIYEVYTALEEKMSGQYMQTEDMLVALCKMIET 190

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                   I I G          ++ ++A H     +   +D   P  ++   TE   +I
Sbjct: 191 SKTIRNADIYIDGFYNFTTVEYMVIQSLAQHAKSLTIALTIDQTDPV-LFRKTTETLNHI 249

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            +           +L   +D + +       L          +M+ +        S    
Sbjct: 250 KTYLHE------RALTYHVDNMHVSYRFNDEL----------NMLENSFSREVSISH--- 290

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLA 399
                            + L +  +   EA  IA  +   +   E  K   ++  D +  
Sbjct: 291 --------------TEHIHLSQHASVPAEAAHIAHKIMDLVRKGERFKDIVVLYRDESYV 336

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           +++     +  I         +       ++ SLL+A         +   +K  L    F
Sbjct: 337 KQLIDVCRKHQIPYHTDYKELMIHHKAIELIRSLLDAFKTNMRMEHLFRALKTGLIAHEF 396

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
             +      + LE V +       D++  + L                 +    ++  + 
Sbjct: 397 KREEDLLLIDMLENVMIERGMYYDDLIHKRKLFY-------------DEKDVYEQDQWDA 443

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLS------ISDWTKLTVTCLQNVCLDEHRKLP 573
            +  +D++L  I P      N  S     S      +S      +   +++  D   +  
Sbjct: 444 LLQYIDYLLSVIEPFKERIVNAQSGRAFASAIYSFMLSISLPEYLMQHKDMAKDNGEQYI 503

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            L F++    L+ +    +     +  +     DII             +    + IL  
Sbjct: 504 ALTFDQILTGLNQVLDDFVLIMDEVTLDYKVMCDIIDVGFLALEYNAPPQGLDQIQILNL 563

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS------DLNLKTAEKYIGQAAHD 687
             +++ N   + + G+N+ + P+   ++  ++   +       D+ L      + Q    
Sbjct: 564 DLAKVENKKYVFVCGVNDDILPRPMKEDALITDQEKRMMQEIGDIQLAPTTDVLIQDEWF 623

Query: 688 --FEMANGTRH-LIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC------ 737
             +      +H +  + SL   N      SR+L RL      +  D              
Sbjct: 624 VFYNAVTHAQHSVYISYSLMNMNQEAMRPSRYLARLERQLHLEVQDMTLDMNPEDCITTY 683

Query: 738 ---YLDWTRKLDYTTKQPHYKRPKPFPPLEA------------------------QPRTY 770
                     ++  T        +  P  E                              
Sbjct: 684 HAGIKHAVSHIEDDTWSDVVAVYETDPQFEHVFKLRHYRNQSEMLAEHEVSRLYGDTIKA 743

Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
           S S  +      +  +A   L+L               G +FH+ +  L +K  ++    
Sbjct: 744 SVSRFETFNQCAFKHFANHGLRLKERLP--YQFQSFQLGNIFHDALRHLSEKFKDQVLQV 801

Query: 831 INHLMKQIIDSHFEKENLPPHIDIIW---------RHLFHKISHSFLEHEEKIQ-SSIEK 880
              ++   ID + +      H ++++         + +   +  +F   + + + S+ + 
Sbjct: 802 DAAVIASEIDDYLKASLPSVHYEVLYSKHYYQYIVKQIRTILLSTFTAIQRQTKYSNFKM 861

Query: 881 IFVNIPA--KMAIESI--------GIHLTGFADRIDLLKS---GFVDITDYKTGDNP-KK 926
                      A+++          I +TG  DRID+L S    +V I DYK+       
Sbjct: 862 ARFETKFGKGGALDTQIYRFGKNKKIEITGQIDRIDILPSPEKDYVRIIDYKSRQTDLDL 921

Query: 927 ETAQKLIDPQLSLEA-AALKAGSFSQID-CRKVANLFYIRL 965
           +     +  Q+       L   +   +      A + Y  +
Sbjct: 922 KQVYYGLQMQMLTYMDVVLSNTARLGLKSDVIPAGMLYFHV 962


>gi|224476067|ref|YP_002633673.1| putative ATP-dependent nuclease subunit B [Staphylococcus carnosus
            subsp. carnosus TM300]
 gi|251764615|sp|B9DIT7|ADDB_STACT RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|222420674|emb|CAL27488.1| putative ATP-dependent nuclease subunit B [Staphylococcus carnosus
            subsp. carnosus TM300]
          Length = 1155

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 120/967 (12%), Positives = 265/967 (27%), Gaps = 139/967 (14%)

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK-YGMWWLLAADFLKIA 191
             S L+L  S       +  L++ I   +      E L    +E             + + 
Sbjct: 105  RSELNLYQSQTKYYGFSAKLSEQIQDFKKYAVSPEQLEQFISENPLQTRTQDKLHDIALV 164

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             ++  ERL +   SS       + + +    +K  +  I I G         +++  +A 
Sbjct: 165  YRHLEERLADNFVSSEDTLYKFIEKMDESKWLK--RAEIYIDGFHNFSTLEYQIIEKLAQ 222

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITS-SNTTYSTHPQYSLAKLLDFLDIKREDV 310
                  +L  L  +     ++   + S+ +T         +  ++L +       +  D+
Sbjct: 223  CAKSVSIL--LTTNGDKDPFSLFRKTSSTLTHIEEIAQRQNIDFNLRRFTKQERFENRDL 280

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
              L              ++ F                   +      ++ ++E  N REE
Sbjct: 281  SHL----------EHSFNEVFF------------------DKAAAEGNINILETSNVREE 312

Query: 371  AISIA-IALRMSLDEN--KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
              +IA   +R + +EN   +  A++  D   A  ++     F I  +I     ++     
Sbjct: 313  VNAIARDIIRKAREENIRFQDVAVLYRDETYAHLMESVFPEFDIPFNIDTKKSMTHHPVM 372

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             ++ SLL  I     F  +  L K  +    F +       + LE   L         +D
Sbjct: 373  EMIRSLLEVIESKWSFEPLMRLFKTQVLTKKFKDNRYL--TDILENYVLERGIYGQRWLD 430

Query: 488  LKSLVLDRIATQKNNTHV-PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
             K   +++                   +   +L   ++D IL+    L    T +     
Sbjct: 431  DKYFKIEQFNLMGLKRQPMTEETEADYQRVIDLKNYVIDKILRFEKALAEADTAETYAAA 490

Query: 547  NLSISD---WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                 +        +T    + L           ++           +       +    
Sbjct: 491  FYEAFEQFNLPSQLMTERDELDLAGE-HQQAEELDQVWNGFIQTLDDLATVFGNREMTQK 549

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
             ++++    ++        +    + I     +++ N   + + G+N+G  P+  + +  
Sbjct: 550  RFLELFDVGLEQLEFVMIPQTLDQVSIGSMDLAKVDNKKHIYMLGMNDGTMPQAISNSGL 609

Query: 664  LSRVMQSDLN-------LKTAEKYIGQAAH--DFEMANGTRHLIYTRSLRE-NNIPTIAS 713
            +S   +             TA+      A      M   + H+ ++ SL   NN     S
Sbjct: 610  ISDDEKKYFQEETQLELSPTADVLQMDEAFVCYIAMTRASTHVTFSYSLMGLNNDDKEVS 669

Query: 714  RWLQRLLVL------------GGTDFFDNLKKRGQCYLDWTRKLD-------YTTKQPHY 754
             ++Q +  L               +    ++   Q  +    +L                
Sbjct: 670  PFIQNIRDLYTNLDVLNVQYAAQHNPLTVMEHPHQTKIALFEELQSWLNHELTAETWLEA 729

Query: 755  KRPKPFPPLEAQ-----------------------------PRTYSFSEIKQLINDPYAV 785
             +        ++                                 S S  +     P+  
Sbjct: 730  YQAMLHNERLSRGLQYLTSALTFDNKTIQLNQSLSKALYGDKINASVSRFEGYQQCPFKH 789

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
            Y    L+L+     K   +  D G +FH+++  +  K         +  ++++     E 
Sbjct: 790  YTSHGLRLNER--TKYKLENFDLGDIFHSVLKYIADKIHGDFRNLTDASIRKLTQEALEN 847

Query: 846  ENL--------PPHIDIIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK------- 888
                                     I  S L   +   +             +       
Sbjct: 848  ILPEVQYNLLNSSAYYRYMSVRIGAIVQSTLTALKYQGTFSKFRPQAFEKSFRKNPKSNE 907

Query: 889  -------MAIESIGIHLTGFADRIDL--LKSGFVD-ITDYKT---GDNPKKETAQKLIDP 935
                      + I I++ G  DRID    K      I DYK+               +  
Sbjct: 908  QLAAESLYTSQGISINIRGQIDRIDTFNSKDRSFVNIIDYKSSGYSGTLDLTKVYYGLQM 967

Query: 936  QLSLEA-AALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCI-TNDKKKYSADELSEKSLK 992
            Q+       L+      +    +   L Y  + +            +    +EL +    
Sbjct: 968  QMMTYMDVVLQNKERLNLAETTEPGGLLYFHVHEPRVNFANWAEMDEDKRQEELLKSFK- 1026

Query: 993  NLIEIVT 999
             L  ++ 
Sbjct: 1027 -LNGLIN 1032


>gi|227810115|ref|ZP_03989028.1| predicted protein [Acidaminococcus sp. D21]
 gi|226904695|gb|EEH90613.1| predicted protein [Acidaminococcus sp. D21]
          Length = 1037

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 107/999 (10%), Positives = 260/999 (26%), Gaps = 173/999 (17%)

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179
                 + I+ L  +  L    + A+      ++  ++  +ET     ED           
Sbjct: 109  ARIASEAIEYLVGKELLPYFRTLADKKGFCDSVVQLLTELETCHVTGEDFKNAVLSWNRE 168

Query: 180  WWL--LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
                      + +    +   + E +     G   A +    +         +  +    
Sbjct: 169  EKRGGEKDKEIALILSAYEALMNERHLCDLNGLYDAALDVLQDPGAILPWEKLYFSEFNE 228

Query: 238  SIPATARLMSTVANHPNGA--IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
                   L+  +    + +  +        +  A      +   +               
Sbjct: 229  LTGLQMALVKALGKRVSISFGLFYDESRPDLSEATRKLEEDLLGDGYEK----------- 277

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
                                           I          D+        K       
Sbjct: 278  -------------------------------IIAPKKVSRPEDLAYFAETFPKATGDAVA 306

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINI 413
               + L EA +   E   +   ++  L       +  L+  + N  + +   +  +G+  
Sbjct: 307  AQHIYLGEASSVDSEIKMVLTDVKKKLKSGVAPHEILLLVRNLNDYQGLGRYMEEYGLLS 366

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLSRAKNAL 471
             ++    L+       LT L  A    +D M +  L+K  L +  F      +       
Sbjct: 367  TLADVTDLAGQPLPLFLTKLWEAALTKDDTMPLLALMKTTLMQELFHVDRIAVGHLVEES 426

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED--KELAVLLVDHILQ 529
             +            +   S +       +       W+  L E     +L         +
Sbjct: 427  YIETPGFLLERISHLSGVSDLKPLFEALQTPKTCTQWRDYLDERLTEWDLVRTFGRLHQE 486

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                L   K    S     +  D  +     + +  L         +++E          
Sbjct: 487  GKVTLSEVKIMAQSEDFVRAFFDRLEALFEAVGSKDLSVGLGDIFSYWKEA--------- 537

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                                   + G T+         + ++   + + + +  + + G+
Sbjct: 538  -----------------------LIGTTITLTPSHEEGIRVMEASDIQGVPYPYVYILGV 574

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLN-----LKTAEKYIGQAAHDFEMA--NGTRHLIYTRS 702
             +G++P  + ++   S   +++L      L T+ + + +    F  A     + +  +  
Sbjct: 575  RDGLFPAISRESWLYSDEERTELAALDIPLGTSARRLARDRFFFASAVSLAEKEVHLSWF 634

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ-----------CYLDWTRKLDYTTKQ 751
              +      AS +++RL           +                 YL     L      
Sbjct: 635  ADDEGG---ASYYIERLRHFFTPHALPFVTYHSDVHDCYSEPQMVRYLMEAENLGEKEAT 691

Query: 752  PHYKRPKPF---------------------PPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
                                             + +    S S++   +  P+      +
Sbjct: 692  YLADHVDAKILLRAQDEKNRFAPKSLYNGYLGPQEETLHLSASQLDGFLTCPFMYLFTHV 751

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---------PEINHLMKQIIDS 841
             KLD        P     G L H  ++  + + + +            E++   +     
Sbjct: 752  WKLDVKEAKTAFPTPDVVGNLIHLTLSRFMGRHLGEALFTKELEMLWQELSEAYQAAYTE 811

Query: 842  HFEKENLPPHID--------IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------ 887
                 ++P              W   + ++    +++EEK  + +    V          
Sbjct: 812  MERNGDIPRSRYSDHIRKSYEEWLKRWLRME---VDYEEKSPTGVTVCAVEKAFGRKGAA 868

Query: 888  ----KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
                 + ++   ++L+G  DRID  +SG   I DYKTG  P      +    QL L    
Sbjct: 869  WPPYDLTVDGKKVYLSGQIDRIDRSESG-YLIMDYKTGGRPTTARMDEGKAVQLPLYIKV 927

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKI-----------DCITNDKKKYSADELSEKSLK 992
            L+      +  +++    Y  ++   ++                  +    +++ + S  
Sbjct: 928  LERNL--GLIDQQIFGAIYGDIRTGRRVGGMWSSVGKAAKEAPKSVRGKDMEDVLKISEN 985

Query: 993  NLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031
             +   V  +++G+  F +    + K         + R+ 
Sbjct: 986  VIAAAVRRMRSGD--FAAEP-YNGKCPDYCPARDICRIK 1021


>gi|314918022|gb|EFS81853.1| UvrD/REP helicase [Propionibacterium acnes HL050PA1]
          Length = 916

 Score =  182 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 114/927 (12%), Positives = 231/927 (24%), Gaps = 116/927 (12%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+ V +   T+ + Q LR+  +   G  + + P + ++  +      +           
Sbjct: 46  RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               ++   +  L+                        + A     A ++  +   +  E
Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +DL           W +   FL               A +    +IAL R  A+  
Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++     +I    T   P+  RL++ +A      ++    D       +     +     
Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                          +L + +D   +        +         + +S          ++
Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399
            +      +       VA + A +       IA  LR +   +    +  A++T      
Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365

Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLN-----DFMAIATLVKHP 453
             +   L   GI +  S     LS     + + + L     L          +ATL+ +P
Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLANP 425

Query: 454 LAKFGFPEKYLSRAKNALELVALRGN--------------KNSYDIMDLKSLVLDRIATQ 499
           LA       +       L                          +  D  S   D    +
Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
            +     +          +   ++   + +    L +  T   +       S W     +
Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +R L  L    +    +   + I      I+             I  +  +
Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677
              E    + ++     +   FD + + GL EG WP        +     S   L  A  
Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658

Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717
             E    +        +  RH +   S+         S                    L 
Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764
            L+        D  +  G                    R +        +++  P     
Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A     S S I +L+  P   +  R          +        G+L H I         
Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             + PE    ++         E                    F    +     +    V 
Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSG 911
           +   + + S    + G  DR++    G
Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEG 914


>gi|315645968|ref|ZP_07899089.1| ATP-dependent nuclease subunit B [Paenibacillus vortex V453]
 gi|315278729|gb|EFU42043.1| ATP-dependent nuclease subunit B [Paenibacillus vortex V453]
          Length = 1176

 Score =  182 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 114/1032 (11%), Positives = 259/1032 (25%), Gaps = 137/1032 (13%)

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
              +   G +  +   + S   +           +      +S   + + + +++   + +
Sbjct: 50   ALVNAGGIRGMMRAQVLSFRRLAYRVMQETGGAA---KVAISEEGKRMLMYKILRRRKEE 106

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKY- 177
            L                      +     L+++   ++          E L  + +    
Sbjct: 107  LQLFGASGEQ-------------LGFVGKLSELYTEMKRYCIDASCVEEQLSQMMSGSGN 153

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
                    + +    + +   +  L  +       +L    A+         I I G  G
Sbjct: 154  SPMLRRKLEDIVTVFRDFELEISRLY-TDEEDTLASLAEGVADSEYIKRAD-IWIDGFHG 211

Query: 238  SIPATARLMSTVANHPNGAIVLPGLD-CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
              P   R++  + +H N   +   LD  ++  A+ + +        +            L
Sbjct: 212  FTPQEYRVLGELIHHANHVTIALTLDKPYMDGAVPHELDLFHPTAVTYIK---------L 262

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              + D L +  E       V        ++                    N         
Sbjct: 263  KGIADELGMDAEHHMLHPEVPPRFQDSPVLAHLERGYDRKKRWTGAYGDGNHEDKENGRR 322

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGIN 412
              + L  A + R E       +     E      + +  +    +    V      + I 
Sbjct: 323  EGLLLHAASHRRAEIEGALREMLRLAQEEGARFREMAVFVRNMGDYEHLVGPLFKEYDIP 382

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
              +              + S L+ I +   +  +   VK  L              + LE
Sbjct: 383  YFLDQKRSELHHPLVEFIRSALDIIGRRWRYEDVFRCVKTDLL-LPLDGSLNREDMDRLE 441

Query: 473  LVALRGNKNSYDIMDLKSL--VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
               L    + Y   D +    +         N  +     +  E  + +    +    + 
Sbjct: 442  NHVLASGIHGYRWTDGRPWKGIPSLSLEDGENEVLNLDGMQAIEYARRVIAEPLHAFEKR 501

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +    T      +    L   D  +     L    LD  R        +    +  L  +
Sbjct: 502  MKKAATAMDQSTAVYRLLEECDVPEKL-ELLSRAALDAGRPEEAREHRQVWGAVLDLLDQ 560

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            I+E     K +   +  ++   +    +         + I     +R        L G+N
Sbjct: 561  IVEMMGAEKLSTELFTGVLDTGLTEMKMALVPPSLDQVLIGSMDRTRTGGVKYAFLLGIN 620

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAE-------KYIGQAAHDFEMANGTRH-LIYTR- 701
            +GV P     +  L+   +  L  +  E       + + +    +         L  +  
Sbjct: 621  DGVLPAQFQDDGILTEPERLHLEDRGLELAPSISRRLLDERFLIYNALTSASEQLWVSYP 680

Query: 702  SLRENNIPTIASRWLQRLLVLGG--TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK---- 755
            +  +     + S  ++ L ++              GQ   +  R      K   Y     
Sbjct: 681  AADDEGKTLLPSEVIRHLKLMFQIDETPLYPRPHAGQSVPEQERYAARPDKTLAYLTGRL 740

Query: 756  ------RPKPFPPLEAQPR----------------------------------------T 769
                     P                                                  
Sbjct: 741  RDWRNGEDIPHIWWHMYNWFAQKPEFRPRLESMLSSLSYRNEAQPLKEETSRQLYGTKLR 800

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII-------TELIKK 822
             S S +++ +  P++ +A   LKL             D G LFH  +           + 
Sbjct: 801  TSVSRMERFVACPFSHFASHGLKLRERQ--LYRLQAPDIGQLFHAALSSMAVKFQSEHRS 858

Query: 823  RINKNTPEINHLMKQIIDSH---FEKENLPPHIDIIWRHL-FHKISHS--FLEHEEKIQS 876
              + +  E     +  +D      + E L       +       I      +  E+  + 
Sbjct: 859  WGDLSADECLREAEATVDRLAPMLQGEILLSSKRYGYISRKLKNIVGRASVILGEQARRG 918

Query: 877  SIEKIFVNIPAKM--AIESIGIHL--------TGFADRIDLLKSGF---VDITDYKTGDN 923
              E I + +       +  +   L         G  DR+D+ +      + + DYK+   
Sbjct: 919  KFEPIGLELDFGPGKPLPPLTFELLNGVKMEVVGRIDRVDMARGEHGIMLRVIDYKSSQK 978

Query: 924  P-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKY 981
              +       +  Q+      L   +   +  +   A   Y  +      D +       
Sbjct: 979  DLRLHEVYYGLSLQMLTYLDVLLTFAEDWLGEQALPAGTLYFHV-----HDPVLQSANGM 1033

Query: 982  SADELSEKSLKN 993
            + ++ +E+ LK 
Sbjct: 1034 TPEQAAEELLKR 1045


>gi|310643060|ref|YP_003947818.1| ATP-dependent nuclease subunit b [Paenibacillus polymyxa SC2]
 gi|309248010|gb|ADO57577.1| ATP-dependent nuclease subunit B [Paenibacillus polymyxa SC2]
          Length = 1188

 Score =  182 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 103/970 (10%), Positives = 251/970 (25%), Gaps = 132/970 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKK----WEDLHAL-KNEKYGMWWLLAADFLKI 190
            LSL     + +     L  +   ++          E L  +    +           + +
Sbjct: 109  LSLFKDSGDQLGFVDRLNTLFTELKQYGNDARSVPEQLERMHAAGESAPILRGKLKDIGL 168

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
              + +   L            + ++  +           I + G     P   +++  + 
Sbjct: 169  IYEDFERELTLKYID--GEDTLRMLTEQIAQSSLIRGADIWMDGYRRFTPHEYKVVEQLM 226

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
             H +   V    +            +    +   + + +T+    L  + D L I+ +  
Sbjct: 227  LHASSLTVALTCNRSY------ESGQLPHELDLFHPSAATY--VKLKGMADELMIETQTQ 278

Query: 311  KRLGNVSNEMYGRSMVISKS----FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                +       R  +              +  +   + + +          + L  A N
Sbjct: 279  LLRPDPMPRFKERPALAYLEANFEHRTGLWNQEQRMRLQQLREQWADTQPEGIKLYAAAN 338

Query: 367  EREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
             R E       +R    E      + +  +    +    V+    ++ + + +     + 
Sbjct: 339  RRAELEGAVREMRRLAREEGARYREMALFVRHIEDYEPWVEPIFKQYQVPVFLDQRRSIL 398

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
                  ++ + L+ + +   +  +   VK  L              + LE   L      
Sbjct: 399  HHPLVELIRASLDIVQRRWRYEDVFRAVKTDLLLPLDGRVS-REQMDRLENYVLACGIQG 457

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                D +     +     +       ++R  +E  +L  L  D I+  +           
Sbjct: 458  SRWTDGRPW---QAVPSLSLELEEQERNRQRDETLDLMELCRDVIVTPLHAFEKRMGKAR 514

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHR------KLPNLWFEEEGKTLSSLFSKIIETGS 596
            +                    +    H+              +    +  L  +I+E   
Sbjct: 515  TALEKCEAVYLLLEDAEIGHKLDAFIHQAEESGNPEQAKEHRQVWDAVLELLDQIVEMMG 574

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
              + +   +  ++   +    +         + +  T  +R+       + G+NEGV P 
Sbjct: 575  DERLDTALFAGVLETGLAEFRMGLVPPALDQVLVGNTDRTRVSGIQHAFVLGMNEGVMPA 634

Query: 657  NTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGT--RHLIYTRS-LRENN 707
               ++  L+   ++ LN           + +         A  +  + L  + +   E  
Sbjct: 635  VFHEDGVLNEQERTALNEQGVDLAPDMTRRLLDERFLAYTALTSAGKSLWMSYAVTDEEG 694

Query: 708  IPTIAS---RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF---- 760
             P + S   R +++LL              G  +        + ++       +      
Sbjct: 695  KPLLPSELVRHVRQLLPGLDERPLAGYPLPGDAWTTQWEYASHPSEALPQLIAQLRHWRR 754

Query: 761  ------PPLEAQPR----------------------------------------TYSFSE 774
                  P  E                                              S S 
Sbjct: 755  GGDILSPWWEVYNWYASQQGREKDKLRQLLTSLFYENHAEMQKETSRRLYGSKLRTSVSR 814

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------- 827
            +++ +  P++ +A   L+L             D G LFH  + E+      +N       
Sbjct: 815  MERFVACPFSHFASHGLRLKERQM--YRLKAPDIGQLFHAALGEMAINLRERNVSWGSLS 872

Query: 828  ----TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKI 881
                  E    ++++      +  +              I      +  E   + S E I
Sbjct: 873  TEECRQEAESTVERLAPRLQGEILMSSKRYGYILRKLKDIVSRASLILGEHARRGSFEPI 932

Query: 882  FVNIPA--KMAIESIGIHL--------TGFADRIDLLKSGF----VDITDYKTGDNP-KK 926
             + +       +  +   L         G  DR+D+   G     + + DYK+     K 
Sbjct: 933  GLELDFGPGQLLPPLSFRLDNGVVMEIVGRIDRVDV-AEGEKGLLLRVIDYKSSQKDLKL 991

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADE 985
                  +  Q+      L   +   +      A   Y  +      + +       SA++
Sbjct: 992  HEVYYGLSLQMLTYLDVLLNAAEEWLGETAYPAGTLYFHV-----HNPMLQSPNGLSAEQ 1046

Query: 986  LSEKSLKNLI 995
              ++ LK   
Sbjct: 1047 ARQELLKRFK 1056


>gi|258652354|ref|YP_003201510.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
 gi|258555579|gb|ACV78521.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
          Length = 1099

 Score =  182 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 129/1013 (12%), Positives = 251/1013 (24%), Gaps = 148/1013 (14%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +     ++ A+    +V     +         + +   ++RA  EL S   +     +
Sbjct: 68   PGTGKTATLVEAVAERIMVRGVPPE--------QILVLTFSRRAAAELTSRITQRL-SVT 118

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
            T  P++++L              S    P        L  A        +L     D   
Sbjct: 119  TREPMVRTLHGYAFAVLRRQAARSGESIP-------RLLAAGESDHVVRELLAGHLDGEG 171

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
                        +   A  L +++            L      +    W  AA F +   
Sbjct: 172  GGWPEALRPALGSPTFAAELRELLLRTAERGIGPSRLAEWGRRRRRPEWQAAARFAREYQ 231

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--------GPIIIAGSTGSIPATAR 244
                 R        P   Q  L RA    L               + +       PA AR
Sbjct: 232  DVADLRQGTAGLG-PALDQAELTRAALALLADDAVLAHEQGLVRRLFVDEYQDVDPAQAR 290

Query: 245  LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
            L+  +++  +  +V+   D       +      +    +   T S    + L        
Sbjct: 291  LIDRLSSGADELVVV--GDPDQSIYAFRGSQPGAMRRITVEKTVSLDVSHRL-------- 340

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                                     +      + +       +     +   ++V +   
Sbjct: 341  --------------------RPAVLTATRRVAAALPGGWPHRDLTSAGEPRPAEVVVRTF 380

Query: 365  DNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIP 420
                 EA  +A  LR +         + + L+ +       V+  L   G+        P
Sbjct: 381  STAASEAAFLADELRRAHLRGGLAWSRMAVLVRSPAADLPVVRRALAVAGVPCATGLVDP 440

Query: 421  LSTTLHSSILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
             S       +  LL+   +           L+  P            R +  +   A  G
Sbjct: 441  GSDDPVVRSILRLLDCALEPARLTGERAIDLMTAPGFGMDTDAVRRLRRRLRVAHPANSG 500

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                              A       +         ED    V+    +L+ +  +    
Sbjct: 501  PT----------------ADLVAAALLGAPLPEDLPEDLSAPVIAARTLLESVRSVAEDP 544

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
              +                +           R   +L         +      +      
Sbjct: 545  DPRVPLWRAWQGLGLADALLAASLRGGRAGFRADRSLDAVLGLFDAAGELVARLPYAGVR 604

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                 E  D    L       P       + +L    ++ L +D + L G++EG WP   
Sbjct: 605  AF-LAEVSDRRIGLDPAGARGPGGPGGHGVALLSAHSAKGLEWDMVCLAGVSEGRWPVLR 663

Query: 659  AKNPFLSRVMQSDLNL---------KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
             +   L      D                  + +    F +A          +    +  
Sbjct: 664  RRQSLLGLDELLDAEDGVASGNIDGPGGGDALNEERRLFYVAATRTRGRLV-ATSVADQD 722

Query: 710  TIASRWLQRLLVLGG-----TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP------- 757
            T+ SR+L  L           +  D  ++R     D    L      P    P       
Sbjct: 723  TVPSRFLTELAGPAELPHGWPEQPDGSRRRRLQLTDLVADLRRAVTDPTTPEPTATAAAR 782

Query: 758  --------------------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                                         P  +  P T S S ++ L   P      R  
Sbjct: 783  QLARLAAAGVDGAHPRDWFGLAGLSTSAAPVADGAPVTLSPSTVEALTRCPLRAVLERRG 842

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
                    + +      G + H ++  L +     +                 + NLPP 
Sbjct: 843  ARSGTSQQQIE------GIVMHALVDGLARGVPRADLVAEMERFLA------GRTNLPPW 890

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-------SIGIHLTGFADR 904
            +    R     +  +      ++ +    +         +           + + G ADR
Sbjct: 891  LIARTRRALELMLTAAQTWMAELPADRRPVATEAQLSTWLPQSDEAGRGRPVKVNGRADR 950

Query: 905  IDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
            ID    G + I D+KTG   P +   ++  + QL++   AL+ G+ + +   +
Sbjct: 951  IDQAPDGSMIIVDFKTGASVPSRAAVEQ--NAQLAVYQLALRLGAGADLATPE 1001


>gi|258406097|ref|YP_003198839.1| putative DNA repair protein [Desulfohalobium retbaense DSM 5692]
 gi|257798324|gb|ACV69261.1| putative DNA repair protein [Desulfohalobium retbaense DSM 5692]
          Length = 913

 Score =  182 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 120/882 (13%), Positives = 240/882 (27%), Gaps = 93/882 (10%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            L  + +         +    +     L   E           ++ AG+       A  + 
Sbjct: 69   LSRSYQTIWSDPASPDVPRLLTPAQELAVWEDAVQQSPEGRRLLNAGAAARSAREAWQLW 128

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
                    AI             W                 S     +L  LL       
Sbjct: 129  QEYCLNEEAIQAEAGPDTEAFLGWAAA--FRDRCRKRQWLDSGRLPRALRGLLAQGKGDI 186

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
             +   L         +  ++           +     ++          S VA +   + 
Sbjct: 187  PEEVTLAGFDLVSPMQQELVQTLSEAGCPVWVLQPQEVQ----------SRVACVPCADA 236

Query: 368  REEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGIN------------- 412
            R+E    A   R  L+E+   +   ++   + +   V   L                   
Sbjct: 237  RQEMDDAARWARELLEESASIRIGIVVPNLQAVREDVLEALEAVLEPERLLPWGGDTPSC 296

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            I++S G P++ T        LL              L++      G  E           
Sbjct: 297  INVSLGGPVAETAVGRCALGLLRLGRTTFKTEDFGALLRSRHWAGGESEWAARA------ 350

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
                          +L++ V      Q   T    + +R  E D                
Sbjct: 351  --------------ELEAAVYAVGEPQWTRTLAEFFLARHGETDCPETAR---------- 386

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
             L  +    +      S S W +     L++V        P+  ++        L     
Sbjct: 387  ALHRFWARLDDLPRKQSWSQWAETFGEVLRSVGWPGASGQPSASYQAVEAWQECLEGLEQ 446

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
                   A   E +  + +L      +P+      + +LG LE+    FD L + GL + 
Sbjct: 447  FDQVLEPAGYGEALQRLEQLARETLFQPESGHHP-VQVLGLLEAAGSRFDALWVMGLTDE 505

Query: 653  VWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMA-NGTRHLIYTRSLRENNIP 709
            VWP     +P L   +Q   ++    A++ +  A             ++++   R+ +  
Sbjct: 506  VWPPAARPHPLLPHALQIHSDMPHCAAQRELRFARQVTHRLSTAAPEVVFSLPQRDGDRE 565

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
               S  L     +   +                 +L    +            +E     
Sbjct: 566  LQPSPLLADHPRIARDELL------PTTVPSLWEQLGQAAEPHWELDEGAPALVEGTRLR 619

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI------KKR 823
                 +K     P+  + R  L+   +   +      +RG L H  +          ++ 
Sbjct: 620  GGTGTLKAQALCPFQAFGRFRLQAAAVRPPEPGITALERGNLVHKALETFWAEMQTRERL 679

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPP------HIDIIWRHLFHKISHSFLEHEEKIQSS 877
               +   I    ++      E+               +      ++   +   E +    
Sbjct: 680  QGASAETIAATARKGAQKGVEQLAERRPMTLTGRHRELEEDRLTRLLEQWAARELERTPF 739

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936
                 V    ++     G  L    DR+D L  G + + DYKTG+       A +L++PQ
Sbjct: 740  AV---VEREHRVEASFAGARLRIVCDRVDRLDDGRLAVVDYKTGEIRVSDWFAPRLLEPQ 796

Query: 937  LSLEAAALK-AGSFSQIDCRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSE 988
            L L A   +   +   +   K  +L Y  +    ++       + +  + +  +  EL E
Sbjct: 797  LPLYALLAETEVAGIFVARIKTGHLEYAGVVGDDQVHLRCRACESMKANAEGLTWQELLE 856

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
                 L ++V+    GE          ++S    +   L R+
Sbjct: 857  VWRGLLTQLVSEYMRGECAVA--PVEEKRSCRFCDLRSLCRL 896


>gi|212212386|ref|YP_002303322.1| ATP-dependent nuclease subunit B [Coxiella burnetii CbuG_Q212]
 gi|212010796|gb|ACJ18177.1| ATP-dependent nuclease subunit B [Coxiella burnetii CbuG_Q212]
          Length = 862

 Score =  182 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 105/696 (15%), Positives = 213/696 (30%), Gaps = 76/696 (10%)

Query: 362  IEADNEREEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGI----NIDIS 416
            +   N   E  ++A         E  +K   +  D    R   L L         + +IS
Sbjct: 216  VNFQNSEMEIQTMARWAYAQWEKEPNQKIGCVMPDLTQHRTQVLRLFTEIFGSSEHFNIS 275

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
                L+    + I    L       D M + T+ +         +               
Sbjct: 276  VAESLTQIPLTQIALKCLELDPFKIDIMQLGTVFRSSYINSRTVDVC------------- 322

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV--LLVDHILQCITPL 534
                       L + +  ++    +    P +      + +       L       +   
Sbjct: 323  -----------LAAQLDVKLRESAHWQANPAFILYHLHQLQPHFQSTTLTTRCQTWL--- 368

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                     +   L  S W +     L  +     R L +  +++  +  + L       
Sbjct: 369  ------SKRSSTRLFPSAWAQQFSEELTAIGWPGQRSLDSKEYQQWKRWENLLHEYAALD 422

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                +      + ++ +L      +P   ++S++ ILG LE+    FD L + GLN+  W
Sbjct: 423  TFTQQQTRKNALQLLRQLAHHTLFQPMSSQNSSIQILGLLETTGHYFDKLWIAGLNDKKW 482

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIPTI 711
            P   + NPFL   +Q    +  A                      +I +  L+E +I   
Sbjct: 483  PPVASPNPFLPLSLQRRCQMPHASAKREMEYTLQLQNRLLKSAPAIILSAPLQEGDIQLS 542

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
             S  ++    +   D       +   +      L         +  +     E +P +  
Sbjct: 543  TSPLIRHFPEINNEDL------QLPVWQPLKAHLFKIKMLETIEDAQAPALQENEPMSGG 596

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE- 830
               ++     P+  +A+  L+   +       +  +RG   H  +  + KK  +  T   
Sbjct: 597  SGLLQSQSICPFQAFAKVRLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNS 656

Query: 831  -INHLMKQIIDSHF-----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
              +  ++ IID        +++ + P      +    ++  ++L  E+K     E     
Sbjct: 657  SSDGELENIIDETITHLISQEKLIQPLFLNTEKKRLKQLIKNWLLLEKKR-PPFEVSQRE 715

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLE-A 941
                + I    + L    DRID        I DYKTG     +     +L   QL L  A
Sbjct: 716  TKRHIKI--GPLRLEVRIDRID----NNCFIIDYKTGGQNSVDDWFGDRLKSIQLPLYCA 769

Query: 942  AALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
             A +     +++++  +K+     I   +KF            + +EL  +    L  + 
Sbjct: 770  YAAREATGIAYAEVRSQKMTFKGLISANEKFNSFSEVK-PSPLAWNELIRRWKMQLYHLA 828

Query: 999  TLLQNGEQPFISHLRL--SEKSNIQSEYDHLARVAE 1032
                +G+    + +    S+          L R+ E
Sbjct: 829  VDFSSGK----ADVDPLDSKTVCKVCHLHSLCRIGE 860


>gi|288905007|ref|YP_003430229.1| ATP-dependent deoxyribonuclease (subunit B) [Streptococcus
            gallolyticus UCN34]
 gi|288731733|emb|CBI13294.1| ATP-dependent deoxyribonuclease (subunit B) [Streptococcus
            gallolyticus UCN34]
          Length = 1080

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 116/962 (12%), Positives = 263/962 (27%), Gaps = 131/962 (13%)

Query: 129  DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188
              + ++ L +           K L D+   ++T      DL  L             + L
Sbjct: 95   SHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLDLTEL-------HSAEKQEDL 147

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP-IIIAGSTGSIPATARLMS 247
                    + L+     +         + EA HL    +   ++I G T        L+ 
Sbjct: 148  VKIFLAVNDILLANQYDNQSKIAYFAKQVEAGHLDATLENVSLVIDGFTRFSAEEEYLVR 207

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +       I+      +     +               +     Q SL   L  L  K 
Sbjct: 208  LLEEKCAQVII----GTYSSQKAYRAA-----------FSTGNVYQASL-DFLRGLAAKF 251

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                       +    S    ++F           D   + +          A+ +  N+
Sbjct: 252  HVQ-------PQYVESSQKSHEAFSKLSKLFEAKHDFTSSDVTLTADDKKHYAIWDVINQ 304

Query: 368  REEAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424
            +EE   +A A+R  L +  +     ++  D +  R        ++ I         +S  
Sbjct: 305  KEEVEHVAKAIRHKLYQGYRYKDILVLLGDVDSYRLQIGKIFDKYDIPYYFGKAESMSDH 364

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                 + SL            +  L+K  L                       GN    D
Sbjct: 365  PLVHFIDSLERVKRYRFRTEDVVNLLKTGL----------------------YGNFKQED 402

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
            +   +  ++      ++            ++       + + I+  +  L   +  + S+
Sbjct: 403  LDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNRMREQIMTPLLALFKAQKQRGSS 462

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                 ++    + +       +    +      E+  +T + + ++        K +  +
Sbjct: 463  LLEKLMTFLHAIHLPDNLEGMVATFSENEQEKHEQVWRTFTGILTQFQTIFGQEKLSLDD 522

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
             + +I   +     +        + +             +   G+ +  +PK    +  +
Sbjct: 523  CLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNKFVFALGMTQAHFPKIAQNSSLI 582

Query: 665  SRVMQSDLNLKTAE--KYIGQAAH-----DFEMAN----GTRHLIYTRSLRENNIPTIAS 713
            S   ++ +N  T +  ++   +        F   +     T  L+ +     N      S
Sbjct: 583  SDEERAQINESTDDNQRFDIVSRENIKKNHFAALSLFNSATEELVLSLPQIANEAEDTES 642

Query: 714  RWLQRLL-----------------------------------VLGGTDFFDNLKKRGQCY 738
             +L  L                                     L   +  +  K+    +
Sbjct: 643  SYLTELASFGVPVLAKGRNRLSTDAEDIGNYKALLSRVIEVNRLAIEEERELSKEEQTFW 702

Query: 739  LDWTRKLDYTTKQPHYKRPKP---------------FPPLEAQPRTYSFSEIKQLINDPY 783
                R L         + P                       +P + S S +    N+ Y
Sbjct: 703  SVAVRYLRKKLAAEGIELPLIKDNMQTKTVSADVIEARFPSDEPISLSSSAVTTFYNNQY 762

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI--IDS 841
              + + +L L  +      PD  + GT  H +   ++K   N +         Q   ++ 
Sbjct: 763  KYFLQYVLGLQEVETIH--PDARNHGTYLHRVFELVMKDDSNHSFDSKLDKAIQTTNLED 820

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
             F+              +   I+ S         + I+        ++ I    + + G 
Sbjct: 821  DFKFVYEEDEESRYSLTVLEDIARSTATILRDD-AQIQVESEEETFELMIA-NSVRIRGI 878

Query: 902  ADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
             DR+D L  G + I DYK+  N    +     + PQL     AL+       +   +   
Sbjct: 879  IDRVDRLSDGSLGIVDYKSSRNTFDIQKFYNGLSPQLVTYVQALRDKKGLS-ESEHIFGA 937

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
             Y+ +++           +K   +   E + + L          E+ ++++ R     ++
Sbjct: 938  MYLHMQEPKVDLSSVATTEKILENLAKELTYRGL------FLEDEKAYLANGRYHLNDSL 991

Query: 1021 QS 1022
             S
Sbjct: 992  YS 993


>gi|320107767|ref|YP_004183357.1| putative DNA repair protein [Terriglobus saanensis SP1PR4]
 gi|319926288|gb|ADV83363.1| putative DNA repair protein [Terriglobus saanensis SP1PR4]
          Length = 927

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 113/908 (12%), Positives = 258/908 (28%), Gaps = 100/908 (11%)

Query: 174  NEKYGMWWLL--AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231
             E+    W       +    +  W + L+E   +  +    A  R      ++ T     
Sbjct: 52   REEGRSGWQAPQILTWDGWVADQWRKMLIE-GVTDCILLNRAQERRVWMRAIEATADSGS 110

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
            +  ST ++   A   + + +  N           +                         
Sbjct: 111  LL-STRAMGEMASDTTRLLSQWNAHEAFTTFQTGVSGP-----DVALFGRWLKTFERICD 164

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
             Q  ++  L    +         +V                     +             
Sbjct: 165  EQRWVSGSLAASRLASTVRGGGFSVPVVEILLVGFDRVLPSQGVVIEAMEERGASVDHAE 224

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRVKLELTRF- 409
              K    ++L    ++REE ++ A  ++  L        A++  D +  R     + R  
Sbjct: 225  QPKQAESLSLATCADDREELLACASWVKDLLACEGSGTIAVVVPDLDETREEIDRVFRER 284

Query: 410  ------------GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
                            + S G  LS T        LL  +    +   ++ +V+ P    
Sbjct: 285  IAPWSYEMGSESAPPFEFSLGDALSKTTMVRDALLLLRWLHGPIELEQVSQIVRSPFLGN 344

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                      +   +   LR  K     ++L+      I  + + T              
Sbjct: 345  EADVSE----RARFDAQVLRRRKRLSLELELREAAKMLIFVKGDATPHTS---------- 390

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                  +  +   +         +         SDW+ L    L+       R   +  F
Sbjct: 391  ------LQSLSTALMQAQKLAQPRLKKAMGW--SDWSDLVREVLETAGWPGPRSADSREF 442

Query: 578  EEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRL--IDGETVKPKIEKSSTLFILGT 633
            +     L   +  +++  + + A    + + ++++ L  +  ET+     + + + I+G 
Sbjct: 443  Q-----LRKRWDDLLDELAGMDALGERVTYEEMLSTLRSMAEETLFAPQSRGARIQIMGP 497

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK---TAEKYIGQAAHDFEM 690
            +E+   +F  +     ++  WP+ ++ +P L   +Q +  +     A  +    +    +
Sbjct: 498  MEAAGSHFQGVWFLHADDMRWPRKSSTSPLLPWTLQKEAGMPGAAPAMDFAFARSVTERL 557

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            A+    ++++ ++         S  +  L  L                      +D   +
Sbjct: 558  ASSAAEVVFSYAVTRAAGTMRPSPAVMALGGLNAWG------------RAVVDTVDTAVE 605

Query: 751  Q-PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                 +   P P L  +         +      +  +A   L               +RG
Sbjct: 606  VMEEVEDSTPLPALTGERLRGGAQIFELQAACSFRAFAEARLFSAQPDEVDPGMSAPERG 665

Query: 810  TLFHNIITELIKKRINKNTPEINH--------------LMKQIIDSHFE--KENLPPHID 853
               H  + +  ++   +   E                 ++   I    E    +      
Sbjct: 666  NATHEALEKFWRRTKTQAELERLSTEIDPVSGRTKRDVVLDTCIAEALEVSDSSWERAYI 725

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG-- 911
             I     H++   +LE E K     E  +     +  +    +HL    DR+D +     
Sbjct: 726  SIQHQRLHELLSRWLEIERKRPVPFEVRYTEHEVEETM-IGDLHLRLRVDRVDEIAGENG 784

Query: 912  -FVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAG-----SFSQIDCRKVANLFYIR 964
                + DYKTG  +P +    +   PQL L A A + G      F+ +   +  +L+   
Sbjct: 785  PEFVLIDYKTGRCSPSEWLGDRPDKPQLPLYAIAGELGNVGGIGFASLRPAE-KDLWLRG 843

Query: 965  LKQKFKIDCITNDKK-KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
            + +   +      +      D+  ++  + L+E+      G+           K+     
Sbjct: 844  MTRTPDVFPPLRKRSADLDFDQQIQEWQETLLELADSFAAGDAAVGPKKYP--KTCEHCG 901

Query: 1024 YDHLARVA 1031
               L R+ 
Sbjct: 902  QRLLCRLD 909


>gi|238916497|ref|YP_002930014.1| hypothetical protein EUBELI_00554 [Eubacterium eligens ATCC 27750]
 gi|238871857|gb|ACR71567.1| Hypothetical protein EUBELI_00554 [Eubacterium eligens ATCC 27750]
          Length = 1109

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 113/903 (12%), Positives = 247/903 (27%), Gaps = 102/903 (11%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALK-----NEKYGMWWLLAADFLKIASKYWTERLVE 201
                +  +I  +   + K + +         + +         D + +    +    ++
Sbjct: 117 GFVSEMKSVISEMLQYDIKPDVMQDAAGAAYSDSEGSAALQYKLDDIVLVYNAF-AEYID 175

Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
            N  +       L     E   +     I+  G TG  P    LM+ + +      V   
Sbjct: 176 KNYITKEEILDKLCSKVTES-ERIKNCEIVFDGFTGFTPVQYNLMTILLSMCPKIYVSLT 234

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
           +D            E         +         L K+ D   +K  +   +   +    
Sbjct: 235 IDASERENSVRGREELFFMSKDCVS--------KLYKICDEEHVKVLEPVYIAGKAVPGK 286

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
              + ++  F   +  D    ++  N      +   ++ + E    +EE    A  +   
Sbjct: 287 NVIVNVNSRFKNSEELDFLEQNLFRNNSGRFNQKTDNIVIYEGAVAKEELTFAAGEIIRL 346

Query: 382 LDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                    + A++TAD +   ++    L +  I   +     ++     + +   L  I
Sbjct: 347 TRLCGYRYNEIAIVTADMDGYGKLAANILKQNDIPYFLDYKRHVTDNPFIAAINGALGII 406

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                + +I   ++  ++     +  L         +  RG  +   I   +  V +   
Sbjct: 407 ENNYSYDSILGFLRTGMSGMEREDIDLLDNYCVAVGIRGRGKWHEPWIRKFRGTVNNT-- 464

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                             D E    L   I   + PL     +K S     +++D  K  
Sbjct: 465 ------------------DLEKLNSLRTMITDMLDPLEEVLKSKES-----NVADMVKAL 501

Query: 558 VTCLQNVCLDE------HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
              L    +++        +     + +  K +  +  K+       K    E+  I+  
Sbjct: 502 YEFLVREDMEQKVSVLNDSEYTGDEYVQLYKKVIEVLDKMYALLGSEKVGIKEFNKILAS 561

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
                 +    + +  + I     +RL N   +   G+N+G  PK       LS   +  
Sbjct: 562 GFQEIKIGLIPQTNDCVVIGDIERTRLDNIKVMFFVGINDGNVPKKADSRSVLSESDREY 621

Query: 672 LNL------KTAEKYIGQAAHDFEMAN--GTRHLIYTRS-LRENNIPTIASRWLQRLLVL 722
           L         +  +          +        L  + +         + S  ++ +  +
Sbjct: 622 LEDKGIVMSASVREKAFTQRFYLYLIMTKSAEKLYMSYAVKNSEGAALMPSYIIRSMRKM 681

Query: 723 GGTDFFDNLKKRGQ----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                  + K   Q      +         T+            L       S +  +  
Sbjct: 682 FSHCLKLSYKDTAQQNSYVTIPQAANSFDNTEIAANVDEDIIDSLTGGRLVGSVTSFENF 741

Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---PEINHLM 835
              P   Y R  + L     F       + G + H +I E+  +            +   
Sbjct: 742 AECPLRYYLRYGVDLKEREEF--TFSPVNFGVVLHAVIREVCDEIKKNGESYYLISDEKR 799

Query: 836 KQIIDSHFEKENL--------PPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885
           ++++                     +         ++    +   E+             
Sbjct: 800 REMVKRSVAAITDIYQNSILKDSSRNSFMIKRMEDLADRTVWAMGEQLKCGDFVPFVFEH 859

Query: 886 PAKMAIESIGIH--LTGFADRIDLLKSGF---VDITDYKTGDNPKKET-----AQKLIDP 935
              M +        ++G  DR+D+ ++G    V I DYKTG     +          ID 
Sbjct: 860 KFNMEVGDGDRKQLMSGTIDRVDICENGTDVYVRIIDYKTGK----KDFNIVKTYYGIDI 915

Query: 936 QLSLEAAALKAGSFSQIDCRK---VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
           QL +   A      +++   K    A +FY  +                SA+E+ +K   
Sbjct: 916 QLMVYMEAAMK-LVAKMRPGKNVIPAGVFYYNISDPIVSATT------ESAEEIEDKIKG 968

Query: 993 NLI 995
            L 
Sbjct: 969 ELR 971


>gi|77919307|ref|YP_357122.1| hypothetical protein Pcar_1709 [Pelobacter carbinolicus DSM 2380]
 gi|77545390|gb|ABA88952.1| DNA helicase/exodeoxyribonuclease V, subunit B [Pelobacter
            carbinolicus DSM 2380]
          Length = 896

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 98/715 (13%), Positives = 217/715 (30%), Gaps = 90/715 (12%)

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL-------------TR 408
            +   +  +E    A  +R  L+   ++  ++  D    +     +               
Sbjct: 217  VAYADVEQEVRCCARWVRHLLEGKAERIGVVVLDMTAYQSRLQRIFREELSPGALLPGAD 276

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
                 ++S G PL      +    LL+   +     +++ L++ P       E++     
Sbjct: 277  AEKAFNLSLGTPLLNEGMVTTAFELLSL-GRTVSLDSLSYLLRSPFVWGHLSEQHARAVL 335

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
            +                          +   +            +    +  +   D   
Sbjct: 336  DR------------------------ELRNLRMGQLPLKQAMVHARRGFKKKLGCCDLFS 371

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
            + +  + +   +            W +   T L+     + R   +  ++        L 
Sbjct: 372  RQLEMIDSLLKDAQ----PRLPGAWARHFATLLETCQWSKDRPFNSREYQVFTAWKELLA 427

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                           E + ++ RL      +P+  +   + +LG LE+  + FD L + G
Sbjct: 428  GMACLDAVSAPMKRGEALRLLRRLAADAVFQPEGSEG-RVQVLGALEAAGMQFDALWVLG 486

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-AHDFEM--ANGTRHLIYTRSLRE 705
             +E V+P     +PF+   +Q  L +  A+       AH       N    L+ +     
Sbjct: 487  AHEDVFPAPARPHPFIPVALQRRLEMPHADAARELDFAHKVAQRLLNAAPQLVVSWPEGL 546

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
            +      S  + +L  +         ++          +L+              P    
Sbjct: 547  DGRERQPSPLIHQLPPIV--PVLAESRQPAALIQAVAGRLEQ------IADSSGPPIEAG 598

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
               +     +K     P+  +AR  L    +       D  DRG+L H ++    K   N
Sbjct: 599  SRISGGTGILKDQALCPFRAFARHRLGARALATASLGFDGLDRGSLVHRVLEWFWKDIGN 658

Query: 826  K------NTPEINHLMKQIIDSHFEKENLPPHI------DIIWRHLFHKISHSFLEHEEK 873
                   ++  +  L+ + ID   E+      +        +       +   +L  E K
Sbjct: 659  WQSLTALDSAALQQLLVKYIDQALEELEAERRVPFSKSQKHLESSRLLALLGEWLAIEAK 718

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETAQKL 932
               +     +    +       + L    DRID L  G   I DYKTG  + +     + 
Sbjct: 719  R-PTFTVDTLEAWHREKF--GPLTLQTRIDRIDRLADGSQVIIDYKTGLASVRDWLGARP 775

Query: 933  IDPQLSLEAAA-----LKAGSFSQIDCRKVANLFYIRLKQKFKIDC----------ITND 977
            ++PQL L         L A +F+++         +I + +   +            +  +
Sbjct: 776  VEPQLPLYTLGRTGSDLSAVAFAKVRRGDSG---FIGIGRDDDLIPGIAATDGHRQLEAE 832

Query: 978  KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
                + ++L     + L ++     +G+   I     S+K+  + +   L R++E
Sbjct: 833  TDIATWEDLLLFWRRTLQQLGRDFCDGQA--IVDPINSQKACDRCDLQPLCRISE 885


>gi|315640912|ref|ZP_07896008.1| exonuclease RexB [Enterococcus italicus DSM 15952]
 gi|315483330|gb|EFU73830.1| exonuclease RexB [Enterococcus italicus DSM 15952]
          Length = 1183

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 104/960 (10%), Positives = 261/960 (27%), Gaps = 139/960 (14%)

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-GMWWLLAADFLKIA 191
            ++ L L     + +   + L  +    +      E LH +  +             L   
Sbjct: 109  QADLQLFRGEISKLGFVQQLVSLYAEFQQGGVSVEALHLMGEKDNASAEIEEKLHELSQI 168

Query: 192  SKYWTERLVELN--ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
               + ++L+E     + P+      + ++  ++ + +K   II G +   P    L++T+
Sbjct: 169  FGRYEQQLLEKEVSLAQPLIELTNYLVSKLINVSEFSKTMFIITGFSSFKPDEKGLIATL 228

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                   I L      + T+  +   +                          + I  ++
Sbjct: 229  MQLGQVKIDLLLDHPALNTSPLDLFFDAQKTYDYFLNFAKD----------QSIPILFDN 278

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                 + S+  +       ++                      +     + + +AD+ + 
Sbjct: 279  KVVANDQSDNRFVVEQFFRQTQNGQTFI-------------KDKAVDDYLHVWQADSIQT 325

Query: 370  EAISIAIALRMSL--------DENKKKSALITADRNLARRVKLE-LTRFGINIDISAGIP 420
            E   +A+ +R  +        ++  K   L  A+ +  R         + I + ++    
Sbjct: 326  EMHQVALEIRRIVAGETELGKEKTYKDIQLFLAEEDKYRPYLASIFAEYEIPVYVNEKKK 385

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL----------AKFGFPEKYLSRAKNA 470
            +        L ++++          I  L +  L            F   +    +  + 
Sbjct: 386  MVQHPLVQFLETIVDLDRYYYRLTDIIRLYRTELYVPHYVKEAYPDFSRQQIQFQQLIDV 445

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
             E +AL  N +    +  K   +     ++         S  + + ++     +   L  
Sbjct: 446  TENIALAQNFHGKRWISAKDWQVYSFDAEQEMPVETTDLSLKTNKLRQAFRRDIHGFLIK 505

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I    T+          L  +   +  +                   E+    L + F +
Sbjct: 506  IKQAETFAEATRMLYDFLLKNGVDQQLLAWRNEAVQAGELDQAR-NHEQTWSALMATFDE 564

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
             +        +   + +++   +   T          + +     +R    D + + G  
Sbjct: 565  FVHLFGDTPFDWSVYTNLLIHSLTNVTFGKIPTSIDQVQVNRIDLARPAQADVVFVLGAT 624

Query: 651  EGVWPKNTAK--------NPFLSRVMQSDLNLKTAEKYIGQAAH--DFEMANGTRHLIYT 700
            E   P+              +L+  +  +  +   ++ + +  H     +  G +    +
Sbjct: 625  ETALPRKQENQTLLDSNEREWLNEQLLGERLMDPVKENLRKEPHVGYSLLLAGAKRTYLS 684

Query: 701  RSLRENNIPTI-ASRWLQRLLVL-----------------------------GGTDFFDN 730
                      +  S ++QRLL                                 +     
Sbjct: 685  YPASSETEQFVKPSPYIQRLLDWQMVTATKKASLKKEIVPTEVVGTYRGLIRRISQIERQ 744

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY-------------------S 771
             K+         R+L     Q   +       + +  +                     S
Sbjct: 745  SKQEKLPLPTVWRQLKQKVLQSPLREVAEMVFMSSDFQNIPVSLTKEQAEKLYGSSLYSS 804

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRI 824
             S ++   N  Y  + +  L+L               G  FH+ +   +           
Sbjct: 805  VSRLETYHNCEYRYFVQYGLRLKERD--IYGLTSAVTGEFFHDALDRFLSLLIRDQLSLT 862

Query: 825  NKNTPEINHLMKQIIDSHFEKE----NLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSI 878
            N        L+++++ S F              +   H   +      ++  E+  +S  
Sbjct: 863  NLTEEMRQSLVEEVLKSIFGDARYQILASSSRMMFLYHQLSQTIQRVSWVIQEQAKRSKF 922

Query: 879  EKIFVNIPA------------KMAIESIG-IHLTGFADRIDL--LKSGFVD-ITDYKTGD 922
                  +              ++ + + G +H+ G  DRID   +       + DYK+  
Sbjct: 923  SPAQTEVLFGQIAAKKGISGLEIPLNNGGKLHVRGKIDRIDHVYVGDQAYIGVVDYKSSA 982

Query: 923  NP-KKETAQKLIDPQLSLEA--AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
            +      A   +  QL      A + A      +  K A  FY+ ++     +    D++
Sbjct: 983  HDFSITDAYYGLAMQLLTYLDVALMDAAELIGQETAKPAGAFYLHVQDPILKEEENLDQQ 1042


>gi|169831438|ref|YP_001717420.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis
            audaxviator MP104C]
 gi|251764586|sp|B1I494|ADDB_DESAP RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|169638282|gb|ACA59788.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis
            audaxviator MP104C]
          Length = 1165

 Score =  181 bits (458), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 122/1014 (12%), Positives = 255/1014 (25%), Gaps = 143/1014 (14%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                  +     +     P V ++ + + LAR++   RN+L    +              
Sbjct: 67   SFRRLAWRVFSEVGGAARPHVGDVGKRMMLARILARRRNELRLFGR-------------A 113

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKN----EKYGMWWLLAADFLKIASKYWTER 198
            A     +  LA ++  ++T     E L                    + L++    +   
Sbjct: 114  AGQYGFSGTLAGVLSELKTYLVTPEALEQAVRMLPGTAETDSLQAKLEDLRLLYTDFERE 173

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
            L            + L+ A            + + G  G  P    ++  +        V
Sbjct: 174  LA--GKYIDPDDYLTLLAARLGESPTLRAAEVWVDGFAGFTPQEYAVLEALLKAAARVNV 231

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               LD                         +   +  LA+L     ++ E    L     
Sbjct: 232  ALCLDP-----------RSGRREDLELFQVTRDTRARLAELARKNGVELERPVELAGPPA 280

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                        F           +              ++ L+ A + R E    A  +
Sbjct: 281  R-----------FRANPALAHLEREFFRRPTKKFAGPPENLRLVAAASRRAEVEGAAREI 329

Query: 379  RMSLDENK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                 E     +  +L+  +  +    V      +GI   I    P+       ++ S L
Sbjct: 330  LRLSRERGWRWRDVSLVVRNLADYHELVATVFADYGIPCFIDRKRPVRHHPLVELIRSAL 389

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
              + +   +  +   +K  L      +  L         +      +  D    +S  L+
Sbjct: 390  ETVTENWTYDPVFRYLKTDLVPVSRGDVDLLENYVLAHGIKGAKWADPEDWHYRRSDALN 449

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            R          P  + R   E               +      +          ++ D  
Sbjct: 450  RPVPNGTGAPAPSDRDRYLREKVNRIRR--RAARHLLDFQRRVQAAGTVRELTAALYDLL 507

Query: 555  KLT-----VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
                    +         E R        +    +  L  +++ET         E+  I+
Sbjct: 508  SDLDVPGRIEEWSREAETEGRLEAAREHRQLWDGVVELLDQVVETLGDEALTPEEYGRIL 567

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
               +DG  +         + +     SR  +     + G++EGV P         +   +
Sbjct: 568  DSGMDGLQLALIPPALDQVLVGSLERSRNPDIRAAFVLGVSEGVLPGRHGGTGLFTDRER 627

Query: 670  S-------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLREN-NIPTIASRWLQRLL 720
                    ++   T  K   +    +       H L  +  L +        S  + RL 
Sbjct: 628  EVLLAAGLEVAPDTRRKVYEEQYLVYIALTRAGHYLWVSYPLADEEGGALAPSSVIPRLR 687

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTK------------------------------ 750
             L      + L    +           T                                
Sbjct: 688  ELFPGLREETLALEPEGTAPGADLPYVTAPGRTLGFLVTRLRDWKSGVTVDPVWWSVFNW 747

Query: 751  ----------------------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                                  +     P+  P L       S S +++    P+A +AR
Sbjct: 748  FAAHAGWRERCAPVLAGLFYENREPRLDPELTPELYGSRLVVSVSRLEEFRGCPFAHFAR 807

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE----------INHLMKQI 838
              L+L      +      D G  FH  +     +                  +   + + 
Sbjct: 808  YALRLKERDVCR--LAAPDIGLFFHAALKTFEDRLREAGMEWDALESADCTRLASAVVEE 865

Query: 839  IDSHFEKENLPPHIDIIWRH-LFHKISHSF--LEHEEKIQSSIEKIFVNIPAK------- 888
            +    + E L     + +      ++      +       S  + + V +          
Sbjct: 866  LAPQLQSEVLLSSPRLRFLTGKLERVVERTAGVMAAHARHSRFQPVAVEVAFGPGRDVPG 925

Query: 889  --MAIESIG-IHLTGFADRIDL---LKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEA 941
                +   G + L G  DR+D+     + ++ + DYK G  +   +     ++ QL +  
Sbjct: 926  PAYPLPGGGSVELAGRIDRVDVAHTDNAAYLRVIDYKAGPRSLALDDVYYGLNLQLLVYL 985

Query: 942  AA-LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
             A L+  +       + A  FY R++             + +   L    L+ L
Sbjct: 986  EAGLREAAALAGRECRPAGAFYFRVQNPLLKGGTPVPPAEVAPRLLKAFRLQGL 1039


>gi|71906107|ref|YP_283694.1| hypothetical protein Daro_0467 [Dechloromonas aromatica RCB]
 gi|71845728|gb|AAZ45224.1| conserved hypothetical protein [Dechloromonas aromatica RCB]
          Length = 912

 Score =  181 bits (458), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 131/881 (14%), Positives = 246/881 (27%), Gaps = 77/881 (8%)

Query: 168  DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
             L      +      +      +    W   L +    S +      + A +E L+    
Sbjct: 12   RLAQTLRGELPAEQAVWRTRQALTLGQWLATLADEALLSGIADLPVALDAFSERLL---W 68

Query: 228  GPIIIAGSTGSIPATARL-MSTVANHPNGAIVLPGLDCHIPTAIWNT------ITEKSTN 280
              +I A  T + P      M+  A        +  L                   +    
Sbjct: 69   EKVIAAALTEAAPLFDIQGMAASAAEAQALCRVWKLKPGGGELSDEAKLFIGWQADFDKR 128

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
              ++    +   Q  L +L+         V  L            +++   +     +  
Sbjct: 129  CRAAGWIDAAGLQRQLIELIAAGHFALPSVIILAGFDRYTPLEQDLMAALAVRGVIVESS 188

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLA 399
                +E               +   +   E  ++    R  L      +  ++  D    
Sbjct: 189  PDFPVEGSAQ---------ERLACADVEAECHAVVAWAREQLVARPDCRLGIVAPDLAGV 239

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
            R     L              L   LH +++      + +  +F     L   PL + G 
Sbjct: 240  RDRLEFL--------------LDDVLHPALIRPDAAEVPRCFNFSLGRALADLPLIRVGL 285

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                L   +  +E   L G   +      ++    R                      +L
Sbjct: 286  DLLALGSGRAKVEQGRLSGLLLAGGWSAAEAEADGRARLDAALRRDL-PYFTTLPALIKL 344

Query: 520  AVLLVD----HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            A  L +       Q I  L  +     +    L    W+ +   CL+       R L + 
Sbjct: 345  AGRLAENEPPLCPQTIAALEAFVETAGAATRKLLPGQWSGVFRNCLKAAGWPGDRPLSSH 404

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             F+        L                E +  +++L      +P+      + +LG LE
Sbjct: 405  EFQARQAFGEVLDGFGRLDALLGPLAFAEAVRRLSQLCRQRLFQPETRGRPAIQVLGVLE 464

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA---AHDFEMAN 692
            S  L FD L + G+N+  WP     NP L   M   +    A   +           +++
Sbjct: 465  SAGLGFDALWVMGMNDDQWPPPPRPNPLLPAEMLRAVGAAHASAEVELDFARRVHVRLSH 524

Query: 693  GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
                + ++ +  E N     S  +  + + G  +       R    +         +   
Sbjct: 525  SAPVVTFSYARAEGNRVLRPSPLIAGIPLAGEKNAELETLARQMAGVA-------VSSVD 577

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                    P  E +  +     ++     P   Y +  L  + +    +  D   RGTL 
Sbjct: 578  QIDDALAPPVAEGEKVSGGSWVLRAQAICPAWAYYQYRLGGEAMEEPVEGLDPAARGTLV 637

Query: 813  HNIITELIKKRINKNTPEI--NHLMKQIIDSHFEKEN----------LPPHIDIIWRHLF 860
            H  +        + +          +Q I     K            LP     +     
Sbjct: 638  HEALEAFWTAIASFDALVALDEAAREQAISEAVGKALQHFELDRRTTLPARFRELEAARL 697

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
             K+   +L+ E +     E +    PA++ IE  GI +    DRID L  G   I DYKT
Sbjct: 698  AKLLDLWLQVEARRGLPFEVVACEQPAEVEIE--GIKVKMVVDRIDRLADGRQIIIDYKT 755

Query: 921  GDN--PKKETAQKLIDPQLSLEAAA----LKAGSFSQIDCRKVANLFYIRLKQ------- 967
            G     K    Q++ +PQL + AA     + A  F+++   K         K        
Sbjct: 756  GAAIDTKNWAEQRITEPQLPIYAALVNDEVTAVVFAKVLLDKPGFAGVADEKDILPGVQG 815

Query: 968  -KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
                   I +  +      +     + L  +   ++ G+  
Sbjct: 816  IGDDKQKIFDPAEFPDWIAVITHWRERLHAVAKEVKAGQAG 856


>gi|253574627|ref|ZP_04851967.1| ATP-dependent nuclease subunit B [Paenibacillus sp. oral taxon 786
            str. D14]
 gi|251845673|gb|EES73681.1| ATP-dependent nuclease subunit B [Paenibacillus sp. oral taxon 786
            str. D14]
          Length = 1180

 Score =  181 bits (458), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 114/964 (11%), Positives = 234/964 (24%), Gaps = 139/964 (14%)

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHA----LKNEKY-GMWWLLAADFLKIASKYWTE 197
             + + L   +A +   ++     +  L      L+  +            L +    + E
Sbjct: 114  GDQLGLIDRIAGLYTEMKKYNVDFSALREHYQLLEQTEGESPLLKDKMHDLSLLFAEYDE 173

Query: 198  RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
             L  L   +     +  +   A          I I G     P     +  +        
Sbjct: 174  ELSRLYIDN--EDHVVKLAQGASKSAYLRGAEIWIDGFHTFTPQEYTAILALLKTAASVT 231

Query: 258  VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
            V   LD                            P  +  KL      +  +V     + 
Sbjct: 232  VSLTLDRVYS-----------NGNLPHELNLFYTPASAFVKLSRLAAEEGIEVLPAELLE 280

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
               + R     +S                 K    Q     ++L  A + R E    A  
Sbjct: 281  ARPFPRFR---ESETLSYLESAYERRSPWPKSEPPQDLEQALSLHRAASRRAEVEGAARE 337

Query: 378  LRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            +     E     +  + L+    +    +   +  +GI   +     +        + + 
Sbjct: 338  MVRLAREEGVRWRDMALLVRNLGDYEELLAPTMEAYGIPYFLDQKASMLYHPMIEFIRAA 397

Query: 434  LNAIFKLNDFMAIATL--------VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
            L+ +     +  +           +   L +            + ++       +     
Sbjct: 398  LDVVLGFWRYEDVFRCVKSEFLLPLDGSLTREHMDVLENYALASGIQGYRWFDGRPWKSA 457

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              L     D+ A             R               I +             +  
Sbjct: 458  PSLSLEQEDQTAASVKAMEQLQLLERCRAAVAGPLSAFEKEIRKA----KNAADMCAAVF 513

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
              L   +  +        +   E +    +   +    +  +  +I+E           +
Sbjct: 514  HLLERVEAAQRLDVLAHRMVR-EGKPRQAMEHRQLWSAVLDVLDQIVEMMGDEPLELELF 572

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
              ++   +    V         + I  T  +R      L L G+NEG+ P N  +   LS
Sbjct: 573  AGVLETGLKELKVSLVPPSLDQVLIGSTERTRSGQVKHLFLLGINEGIMPANLQEEGVLS 632

Query: 666  RVMQSDLNLKTAEKYIGQAA-------HDFEMANGTRH-LIYTRSLRENNI----PTIAS 713
               +  L     E   G A          +E  +G    L  +    +       P+   
Sbjct: 633  EQERERLAELGLELAPGLARKLLDERFLIYEALSGASRSLWLSYPAADGEGGALLPSEVI 692

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLD--------------------------------- 740
            R ++R+                    D                                 
Sbjct: 693  RHVKRIFPGLTERPLLLTPGPASRSADPMASQLEFVSRPGPALNALIGQLRLWKAGESIS 752

Query: 741  --WTRKLD----YTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLI 779
              W R L+        +    R               P     L  +    S S ++Q  
Sbjct: 753  PLWWRVLEWYKTRPEWESKAARLLTSLDYRNRVRGLTPATSRRLYGKRLRTSVSRMEQFS 812

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------KKRINKNTPEIN 832
              P+A +A   LKL             D G LFH  ++++        +   +    E  
Sbjct: 813  ACPFAHFASHGLKLKERQ--LYRLQAPDIGQLFHAALSQMAITFKAQNRSWGSLTPEEAI 870

Query: 833  HLMKQIIDSH---FEKENLPPHIDIIWRHL-FHKISHS--FLEHEEKIQSSIEKIFVNIP 886
                  +D      + E L       +       I      +  E+  + S E +   + 
Sbjct: 871  QAANSAVDELAPKLQGEILLSSKRYGYISRKLKAIVGRASLILGEQARRGSFEPVGQELD 930

Query: 887  A--KMAIESIGIHL--------TGFADRIDLLKSGF---VDITDYKTGDNP-KKETAQKL 932
                  +  +   L         G  DR+D+ +      + + DYK+     K       
Sbjct: 931  FGPGRPLPPLTFELPNGCVMEIVGRIDRVDMAEGEQGLLLRVIDYKSSQTDLKLHEVYYG 990

Query: 933  IDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
            +  Q+      L + + + +      A   Y  +      + +       SA++  ++ L
Sbjct: 991  LSLQMLTYLDVLLSSAEAWLGQPALPAGTLYFHV-----HNPLLQSSNGMSAEQAQQELL 1045

Query: 992  KNLI 995
            K   
Sbjct: 1046 KRFK 1049


>gi|149178400|ref|ZP_01856990.1| ATP-dependent deoxyribonuclease subunit B [Planctomyces maris DSM
            8797]
 gi|148842717|gb|EDL57090.1| ATP-dependent deoxyribonuclease subunit B [Planctomyces maris DSM
            8797]
          Length = 1125

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 127/1080 (11%), Positives = 311/1080 (28%), Gaps = 172/1080 (15%)

Query: 50   YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              PT R+ +++  + +          P + +     E    +       L      I + 
Sbjct: 43   LSPTVRSRRQVLDQLL-SPEMPVCFAPHVFTFEAFAETILQSLDQPVQTLP----EISKR 97

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
              L  ++            DL     +    S A        ++  I  ++ EE   E  
Sbjct: 98   YLLRSIVD-----------DLVAAGQIQYFSSIAGTTGFLDLISHFISELKREEIWPEQF 146

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTK 227
                            + L +    +   L E+      G   +   A  E      G  
Sbjct: 147  SEACGRLKTDSRQKDQE-LALIYDRYQVALHEMRRYDSEGRFWSARTALQEGMWGPFGQF 205

Query: 228  GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
              I++ G          ++  +A   +  ++   L+ ++        +  +  +  +   
Sbjct: 206  DLIVLDGFADFTHTQYEILELLAARTSRLLISLPLENNLRRQDLFAKSVVARQVLENRLP 265

Query: 288  YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
             + H                                 +   +       S +        
Sbjct: 266  GTIH--------------------------------CVACERDAPASSRSQICEALFDNP 293

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLE 405
            +          + ++    +R E   +A+ ++  L +    ++ +L+         +  E
Sbjct: 294  RGIKPSPSAEQIKVLAVAGQRNELEVLAVEIKQLLLQGVPPEEISLVFRSTLEYGDLIHE 353

Query: 406  -LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L+  GI   +      S       + + L        F ++ +++        +PE   
Sbjct: 354  TLSAAGIPYFLGQEQEFSRFPVIRAIFTFLQIELDNWSFDSLMSILDSNYFSPDWPEYKS 413

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLV-LDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
              A   L  +      +S     L +L    R A +    +    + +    + E A  L
Sbjct: 414  GTAVRCLSRILRELKIDSGKTDILNALEKEYRKANELCTRYPDQPKRQAILLEMESAYHL 473

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL------QNVCLDEHRKLPNLWF 577
               +      L   +         +S+++   L           + +   +         
Sbjct: 474  AKRLSSETQKLRGKELFVTWIEILISLANEFGLPKAWSSEEPGTEALDQRDQLVWERFQK 533

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                        +          + + +  ++  L++ +T+  + E++  + +L   + R
Sbjct: 534  LLFHAVAEVDQIEQFHQREAAPLDLLTFRSLLLDLLEQQTLALQTEETGRVQVLDASQLR 593

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-----LKTAEKYIGQAAHDFEMAN 692
             L+   L++GGL+E  +P++  ++   S   + +LN     LK       +    F    
Sbjct: 594  NLSVPYLLVGGLSEASFPRSHREDCLYSEKDRGELNEYGLSLKRHANQQQEEMLLFYEVM 653

Query: 693  GT--RHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFF---------------DNLKKR 734
                + LI +  ++     P  AS +L  L+ L                       +  R
Sbjct: 654  TRFSKRLILSYPAISSTGQPLFASPYLTALMDLFEPGALSVRQVGELNPLPRREQAMSAR 713

Query: 735  GQCYLDWTRK-----------LDYTTKQPHY----------------------------- 754
                L                L+    Q                                
Sbjct: 714  DLRILAIDELKRDQPGLFLQILEEPGFQATARNILSAVEMAVARFEQEGFTEYEGIMVSA 773

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
               +       Q   +S ++++  +  P+  + + +L ++     +   +   RG   H+
Sbjct: 774  ATRQAIHERFPQDYEFSTTQLELYLACPFQFFVQNVLGIEVPEPPELRTNFLQRGIHVHS 833

Query: 815  IITELIKKRINKN-------TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
            I+T L ++  ++          ++  L  ++++      ++   +  +   +  +I   +
Sbjct: 834  ILTRLYEQLGSEGDNTQLYEADQVEPLFLELLEKRVSDSDVESKLQQVLLSIEKQILKDW 893

Query: 868  L------------EHEEKIQSSIEKIFVNIPAK---------------MAIESI--GIHL 898
                           EE   +    +   +P                 + + +      +
Sbjct: 894  GGLFAEQSVTYGQLFEELWDTVPAIVGREVPFGKVPGEPDPSQRQYQHLTLGTGTRETRV 953

Query: 899  TGFADRIDL---LKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
             G  DRID+       + +I DYKTG   P     +     QL+L   A +       D 
Sbjct: 954  RGQIDRIDVGTINGQKYFNIIDYKTGRSVPSSTEIRTGKKLQLALYLIAARRLGMIDADA 1013

Query: 955  RKVANLFYIRLKQKFKIDCI----TNDKKKYSADEL--SEKSLKNLI-EIVTLLQNGEQP 1007
             +  +L Y ++++   +  +        +  S ++L   E +L+ L+  +   +++G  P
Sbjct: 1014 -EPFHLGYWKIQESGFVMPLHSARKRMIEPISPEDLEVLEVTLEGLVPHLAAFIRSGFFP 1072


>gi|293115646|ref|ZP_06604557.1| putative ATP-dependent nuclease subunit B [Butyrivibrio crossotus
           DSM 2876]
 gi|292809251|gb|EFF68456.1| putative ATP-dependent nuclease subunit B [Butyrivibrio crossotus
           DSM 2876]
          Length = 1105

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 109/910 (11%), Positives = 239/910 (26%), Gaps = 110/910 (12%)

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                     +  +I  ++      + L  +             + + +    +   + +
Sbjct: 119 AGRRQGFVSEMKSMISELKQYGITPDMLKEIAVSAGSDRLRDKLEDISLIYSEFENYIRD 178

Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
              +  V  +  L+    ++        ++  G TG  P   RL+  +A      IV   
Sbjct: 179 RFVT--VEDKPELLYRFIDNSDLLKGSTVVFDGFTGFTPVQYRLIEKIALQAENIIVTVT 236

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
           +                     +         Y     +  L +  ++V+    +     
Sbjct: 237 IS-------------SPAINNINTDMGMDELFYMSKDTIRKLGVIADNVRIPFLMQRIES 283

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
             S      F      +    +I             D+ + E  N +EE    A A+   
Sbjct: 284 DHSKY---RFRNSPALNFLEENIFRYNGSTFGGSTEDIHISEHLNGKEEIQYAAAAILKE 340

Query: 382 LDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
           +  +        +I  D++             GI   +     L        +  ++  I
Sbjct: 341 VRTHGYRFNDIGVILGDKDNFANETARIFKESGIPFFMDNKRSLIGNPMVEYIRGIIALI 400

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
            +   + A+  ++K+ L  F   +                    ++ I          + 
Sbjct: 401 KERFSYEAVFRVLKNGLCGFERDKV-----------NIFEDYILAFGINGFDRYCEKFVR 449

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
             K+        +       E+       I +  + +       +         +  +  
Sbjct: 450 AYKSKEMGLDVIN-------EVREDFCCLISEFYSDMTKGTKASDYVNAVYDFME-KENL 501

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              ++ +  +   +     F +    + +L  +I +          E+ +I+    +   
Sbjct: 502 YEEMKMLADNTEDEDKAEEFRKSYGHVVTLLERIYDMLGDEPMTVKEFAEIMDAGFEEIK 561

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL--- 674
           V      +  + +     SR+ N   L + G NEG+ PK    +  LS   +  L+    
Sbjct: 562 VGIIPPSNDCVMVGDLERSRIDNIKVLFVLGANEGIIPKTGDNHGILSEDERMTLSDMQI 621

Query: 675 ---KTAEKYIGQAAHDFEMANGTRH--LIYTRSL-RENNIPTIASRWLQRLLVL------ 722
               T ++ +        +        L  +     ++      SR +  +  +      
Sbjct: 622 VLSPTPKEKVFMQNFYLYLNFTRPENTLYLSYGRYNDDGKEIRPSRVIGIISDMYDIKPY 681

Query: 723 --GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK------------------------- 755
               TDF  N +       D+ +  DY   +                             
Sbjct: 682 HPDITDFLTNRQNSFHLVSDYAKIKDYDADKNLAAVISYFVNDDVYGNIIKKIIDSFNEN 741

Query: 756 ------RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                   +    L ++  T S S I+      ++ +    L +      +      D G
Sbjct: 742 VMSDNLTKEAAKMLYSENLTASVSRIETYAGCAFSHFLTYGLGIGERQ--EHKITNIDIG 799

Query: 810 TLFHNIITELIKKRINKNT---PEINHLMKQIIDSHFEKENLP--------PHIDIIWRH 858
            +FH  +  +    +          +   K  ++  F+K               +   + 
Sbjct: 800 DIFHKTLEYMGCTLMENGLNFGSLSDEERKDFVNVAFDKITADYKYSFFKESAANEFLKM 859

Query: 859 LFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF---V 913
               I +   +   E+    S             I   G+ + G  DRID+        +
Sbjct: 860 RLSDIVNRTVWAMGEQINAGSFIPAAFEHNFIRNIN--GMTVNGKIDRIDIASENGSNYI 917

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            I DYK+G+N   KE        QL +                  A +FY  LK      
Sbjct: 918 KIIDYKSGENTISKEEILTGEKLQLLIYLDEALKEYEKDSVKAVPAAVFYNTLKDPVTDK 977

Query: 973 CITNDKKKYS 982
                    S
Sbjct: 978 KDALQDFIPS 987


>gi|298372051|ref|ZP_06982041.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str.
            F0058]
 gi|298274955|gb|EFI16506.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str.
            F0058]
          Length = 961

 Score =  180 bits (457), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 129/1073 (12%), Positives = 294/1073 (27%), Gaps = 179/1073 (16%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F   +   ++     +           L+ V +  P  R+           T  K    P
Sbjct: 3    FLDLVAKDIIARFGND-----------LSEVVMVFPNTRSRIFFDEYIANATD-KPLFSP 50

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
              +    +  +  +     +  L         +  L ++ +    +  +  +        
Sbjct: 51   RYEDFDSLFRQASSLREADNLML---------ISILYKIYVKHFYRNREETETFDEFFFF 101

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA--LKNEKYGMWW-LLAADFLKIASK 193
                           L    D I+      + L+      E+    +  L  + + + ++
Sbjct: 102  GET------------LLRDFDEIDKYLIDAKKLYRNIADLEQLSDDFEHLTQEQVNLLNR 149

Query: 194  YWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
            ++ +                +               I+    +         ++      
Sbjct: 150  FFADIKTNP---------TRIKDNFISVWS------ILADVYSDF----KAELTAKGLAY 190

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
            NG I             WN I+  S N  +              KL++ L    + +   
Sbjct: 191  NGMIYRDV------IEKWN-ISAPSYNKANYVFVGFNVLSVCEEKLMENLR--PQSLYYW 241

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
                       +   K          +       +  NI+K   ++++I    E  +A  
Sbjct: 242  DYDEYFFDNPFVEAGKFIKKNME---KFPPAAVFETHNIEK-PKNISIISTSTEVAQASY 297

Query: 374  IAIAL--RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            I   +      +     +A++  +          +      I+++ G PL+ T     + 
Sbjct: 298  IPTFIDSLKKKEWLAPDTAIVFCNEQTLLPAMRFIPTNVDKINVTMGFPLNQTPVYDFII 357

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
             LLN   K                             + L ++            +L+ L
Sbjct: 358  RLLNLQQKGIKNGKF-------------------HHTHVLSIINHYYTSLIVGDTELQDL 398

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
                I  +   +        L     E +  +++++L+ +  +     + ++    +++ 
Sbjct: 399  KDKIIDNRLFLSTAEELNIPLIFRRIETSEDMINYLLEIVQAVGIKAKDADADFARINLL 458

Query: 552  -DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
             +        L  +     +                           +       I +I 
Sbjct: 459  NEAIFRVFRILNRISDLTSQGY-------------------------LDIKLPTLISLIK 493

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
            R++  E+V    E +  L ++G LE+R L+FD LI+  LNEG+ PK   +  F+ + ++ 
Sbjct: 494  RILSAESVPFHGEPARGLQLMGMLETRNLDFDNLIIMSLNEGIMPKAEQQASFIPQFIRR 553

Query: 671  DLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFF 728
             + +   E      A+ F        ++  + S   N  + +  SR+L +++        
Sbjct: 554  SVGMSCLEHQDAIFAYYFYRLLQRADNVALSYSTASNGIVKSEMSRFLMQIITELPNHEK 613

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP--LEAQPRTYSFSEIKQLINDPYAVY 786
                           +     K P                    S + I   I+ P   Y
Sbjct: 614  IRRISIQSDVSPTVNQPIVIEKTPSVMERIINKFSITGKSNIQLSPTAINSFIDCPLQFY 673

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN-------------- 832
             R I  +        + D    GT+ H  I  + +                         
Sbjct: 674  LRYIEGVKEPDELTDELDNKILGTVIHRTIEIIYRHLGGIAPLIAEKNRNSFTPFEVSRA 733

Query: 833  ---------HLMKQIIDSHFEKE--------NLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
                      L+ ++++  F  E        +L     +I+  +        L  +    
Sbjct: 734  KIEQYAGNHKLIDELLEKAFSVEFFGRPTPRSLYNGEHLIYFGVARNFIRKILLFDAAN- 792

Query: 876  SSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK------ 926
            +      +    +  I     I + + G+ DR+  +K   + + DYK      K      
Sbjct: 793  APFVIHKMEGYERHTISLANGISVDIGGYVDRM-RIKDNTLFVDDYKVSTAENKLGTLSG 851

Query: 927  ------ETAQKLIDPQLSLEAAALKAGSFSQIDCRK-VANLFYI-RLKQKFKIDCITNDK 978
                  +   K I  Q       +             V  L Y+ R+K       I   +
Sbjct: 852  LFEENAKKHPKHI-LQAFYYGLIMS----KNYPTNDIVPLLLYLPRIKSDIPYIKIGTGQ 906

Query: 979  KKYSADEL---SEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                 ++    + +    L   +  + +  +PF +    S +S    ++ ++ 
Sbjct: 907  NAIGINDFRLIASEFEAMLCSKIEEIFDPTKPFEA--NTSTESCQWCDFKNIC 957


>gi|225375923|ref|ZP_03753144.1| hypothetical protein ROSEINA2194_01559 [Roseburia inulinivorans DSM
            16841]
 gi|225212244|gb|EEG94598.1| hypothetical protein ROSEINA2194_01559 [Roseburia inulinivorans DSM
            16841]
          Length = 1143

 Score =  180 bits (457), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 117/992 (11%), Positives = 272/992 (27%), Gaps = 147/992 (14%)

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
            R++      L         +  LS+     N +     +  +I  +       E L    
Sbjct: 84   RVLEETGKNLVLRKLAGEQKKNLSVLGGNLNRMGYISEVKSLISELTQYNVSPEKLDTFL 143

Query: 174  NEKYGMW-WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232
              +       L    + +    ++E L     +S     +    AE  +++K     I+ 
Sbjct: 144  ETEDVGETLRLKMQDISVMYHSFSEYLQGQYITSEEVLSLLCDAAEDSNIIKD--SVIVF 201

Query: 233  AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
               TG  P   +L+  +       IV   +D            E  +    + +      
Sbjct: 202  DEFTGFTPIQNQLLRKLLVLSERIIVSVTMDAGEDFYHCRGEQELFSMSKKTVSV----- 256

Query: 293  QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
               L K+ + L +  E+   L +  N            +    +      ++        
Sbjct: 257  ---LMKMAEELHVTVEEPVVLSDGKNHR----------YKNAPSLYFMEQNLFRPYYHKW 303

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVK-LELTR 408
            ++   ++ ++   N REE   +A  +   + E     K  A++T D +L           
Sbjct: 304  RQKEDELRIVSLKNPREELHFVAREITKFVREKQYCYKDIAVVTGDVSLYDNYVDEIFAA 363

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
            + I   +     +        + ++L  +     + ++   ++  L      +  L    
Sbjct: 364  YDIPYFLDQTRTILFHPFIEFIRAVLEVVELDFSYESVFRFLRCGLTDITEQQIDLLENY 423

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
               + +  R                                    +E+      + + I 
Sbjct: 424  VLAKGIRGRKKWEKQWTFVFDDT---------------------EKENLTEMNEVREKIY 462

Query: 529  QCITPLVTYKTNKNSTCGNLS-ISDWTKLTV-----TCLQNVCLDEHRKLPNLWFEEEGK 582
                PL    T   +     + + +  +           +     +  ++    + +  K
Sbjct: 463  GFFAPLSEAFTQGKTVRDETTVLYELIEKLEIEQKLKQKELEFERQGNQVKAKEYAQIYK 522

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             +  LF K+++          E+ DI+    +   V      +  + I     +RL +  
Sbjct: 523  IVMDLFDKVVDFLGDEVLPVKEYADILDAGFEAARVGVIPPGNDKVTIGDIERTRLNHIK 582

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANGTRH 696
             L   G+N+GV PK       +S+  +  +          A + +        +      
Sbjct: 583  ILFFIGVNDGVVPKAGNAGGIISQFEREKMVACHLELAPGAREKVFIQRFYLYLNVTKPS 642

Query: 697  --LIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKR------------------- 734
              L  T S    +      S ++  LL +      + +++                    
Sbjct: 643  DFLYVTFSKVNADGKALRRSYFVGTLLKMFPEKTVEEIEETTSADCIMTPKSSMAFFLEG 702

Query: 735  ----------------------------GQCYLDWTRKLDYTTKQPHYKRP---KPFPPL 763
                                           +   T KL  T  + H   P        L
Sbjct: 703  LQDDDRASDFSQVEKRKLWNALSKFYLTDSEWKPETEKLLKTAYEVHSDEPISHAVTQAL 762

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                   S + +++     YA Y    L+L      +      D G ++H+ +    ++ 
Sbjct: 763  YGTVLENSVTRLERFAACAYAHYLNYGLRLKERQLLE--FASVDMGNIYHDALEHFSRRV 820

Query: 824  I-------NKNTPEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEH 870
                    N         +++ ++             ++   +      +      +   
Sbjct: 821  EKSEYTWFNIPEDVQETFIEESMNDAIAGCKNAGAFENVRNRYLTGRMRQTIKRTVWALT 880

Query: 871  EEKIQSSIEKIFVNIPAKM--AIESIGIHLT--------GFADRID--LLKSGFVD-ITD 917
             +  +         +       +++I   L+        G  DR+D           I D
Sbjct: 881  TQIQKGKFVPSDFEVSFSRADKLDAIRFQLSDEEKMNLLGRIDRVDTYETSDKVYVKIID 940

Query: 918  YKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDC--RKVANLFYIRLKQKFKIDCI 974
            YK+G+           +  QL +   A       +      + A +FY  ++    +D +
Sbjct: 941  YKSGNTSFSLVNLYHGLQLQLVVYMNAALELEEKRHPGKKAEPAGIFYYHIQNPI-VDGL 999

Query: 975  TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
             N+ +    + + E+    L  +V    + E 
Sbjct: 1000 GNETEAEIRNSVLEQLK--LNGLVN--DDPEI 1027


>gi|29654532|ref|NP_820224.1| ATP-dependent nuclease subunit B [Coxiella burnetii RSA 493]
 gi|29541799|gb|AAO90738.1| ATP-dependent nuclease subunit B [Coxiella burnetii RSA 493]
          Length = 862

 Score =  180 bits (457), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 105/698 (15%), Positives = 214/698 (30%), Gaps = 76/698 (10%)

Query: 360  ALIEADNEREEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGI----NID 414
              +   N   E  ++A         E  +K   +  D    R   L L         + +
Sbjct: 214  RRVNFQNSEMEIQTMARWAYAQWEKEPNQKIGCVMPDLTQHRTQVLRLFTEIFGSSEHFN 273

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
            IS    L+    + I    L       D M + T+ +         +             
Sbjct: 274  ISVAESLTQIPLTQIALKCLELDPFKIDIMQLGTVFRSSYINSRTVDVC----------- 322

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV--LLVDHILQCIT 532
                         L + +  ++    +    P +      + +       L       + 
Sbjct: 323  -------------LAAQLDVKLRESAHWQANPAFILYHLHQLQPHFQSTTLTTRCQTWL- 368

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
                       +   L  S W +     L  +     R L +  +++  +  + L     
Sbjct: 369  --------SKRSSTRLFPSAWAQQFSEELTAIGWPGQRSLDSKEYQQWKRWENLLHEYAA 420

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
                  +      + ++ +L      +P   ++S++ ILG LE+    FD L + GLN+ 
Sbjct: 421  LDTFTQQQTRKNALQLLRQLAHHTLFQPMSSQNSSIQILGLLETTGHYFDKLWIAGLNDK 480

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIP 709
             WP+  + NPFL   +Q    +  A                      +I +  L+E +I 
Sbjct: 481  KWPRVASPNPFLPLSLQRRCQMPHASAKREMEYTLQLQNRLLKSAPAIILSAPLQEGDIQ 540

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
               S  ++    +   D       +   +      L         +  +     E +P +
Sbjct: 541  LSTSPLIRHFPEINNEDL------QLTAWQPLKAHLFKIKMLETIEDAQAPALQENEPMS 594

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
                 ++     P+  +A+  L+   +       +  +RG   H  +  + KK  +  T 
Sbjct: 595  GGSGLLQSQSICPFQAFAKVRLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTL 654

Query: 830  E--INHLMKQIIDSHF-----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
                +  ++ IID        +++ + P      +    ++  ++L  E+K     E   
Sbjct: 655  NSSSDGELENIIDETITHLISQEKLIQPLFLNTEKKRLKQLIKNWLLLEKKR-PPFEVSQ 713

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLE 940
                  + I    + L    DRID        I DYKTG     +     +L   QL L 
Sbjct: 714  RETKRHIKI--GPLRLEVRIDRID----NNCFIIDYKTGGQNSVDDWFGDRLKSIQLPLY 767

Query: 941  -AAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
             A A +     +++++  +K+     I   +KF            + +EL  +    L  
Sbjct: 768  CAYAAREATGIAYAEVRSQKMTFKGLISANEKFNSFSEVK-PSPLAWNELIRRWKMQLYH 826

Query: 997  IVTLLQNGEQPFISHLRL--SEKSNIQSEYDHLARVAE 1032
            +     +G+    + +    S+          L R+ E
Sbjct: 827  LAVDFSSGK----ADVDPLDSKTVCKVCHLHSLCRIGE 860


>gi|152965139|ref|YP_001360923.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
 gi|151359656|gb|ABS02659.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
          Length = 1098

 Score =  180 bits (457), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 125/1048 (11%), Positives = 264/1048 (25%), Gaps = 100/1048 (9%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
            L   +      D L P     V +  P++R+   LR + +    +++T  P  ++     
Sbjct: 39   LRELVATRVERDGLAPD---RVLVLAPSRRSADLLRDD-LSRRLRRTTGQPAARTPQSYA 94

Query: 86   EEKFTADLLLSYNLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLY------------- 131
                           P  +S  ++   LA L+            D               
Sbjct: 95   FGLLRLVHARDGAPPPRLISGAEQDAILAELLRGHLAVTSPEGPDAAELPELDPAGASTA 154

Query: 132  ------PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
                  P  P  +P +          L D++           DL  L        W  AA
Sbjct: 155  TGGLRVPGWPSDVPRASWGLRSFRNELRDLLMRAVERGLGPADLADLGRAHARPEWCAAA 214

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIP 240
            D L+         L   +A  P G     + A           +     + +  +     
Sbjct: 215  DLLEEYLAV--NALGRADAYDPAGVVDEAVAALRAEPELLAAERARWDLVAVDDAHDLSE 272

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
            A  RL+  VA    G  ++   D    T  +     ++    +        P+  +    
Sbjct: 273  AALRLLEVVAG---GRDLVLATDPDSVTQGFRGADARTAAELADRFG----PRPGVGATT 325

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
              L         L  VS  +  R   +  +                   P +      V 
Sbjct: 326  VVLGTDHRQRPLLHAVSRAVSTRIGALGGA-----------PQRAARPAPEVAVERGRVE 374

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS- 416
            +    +  +EA  +A  LR     +       A++         ++  L   G+ + +  
Sbjct: 375  VAVLASATQEASWVAQRLRRRHLLDGVPWSQMAVVVRSAGHTAALRRSLAAAGVPLAVPL 434

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIA--TLVKHPLAKFGFPEKYLSRAKNALELV 474
            A +P+        L S L  +         A   LV  PL           R       +
Sbjct: 435  AEVPVRDEPAVRPLLSALTVVLDPAALDDAAARELVTSPLGGADVVALRRLRQSLRRSEL 494

Query: 475  ALRGNKNSY----DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
            A  G + S       +                          +        L++    + 
Sbjct: 495  AAGGGRTSDAVLTSALAGALAAPATDLAAATGDLALLGADDPALGPAVRVALVLQAGRRA 554

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE-EEGKTLSSLFS 589
            +       + +         S              + E         + +    L     
Sbjct: 555  LAAAAAGTSAETVLWHLWDASGLAARWQRAALAGAVVEGADAGRADRDLDAVLALFEAAG 614

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            +  +      +       ++   +  +T+  +   +  + +     +    +D +++ G+
Sbjct: 615  RFEDRFPGAGSARRFLDQLMAAEVPSDTLADRAPDAGAVTLTTPQGAVGREWDLVVVAGV 674

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE---- 705
             EGVWP    +   L      D+         G      E      H+  TR+  E    
Sbjct: 675  QEGVWPDLRLRGSVLGAQALVDVLQGRDPDGPGARRAVLEDELRLFHVAVTRAREELVVT 734

Query: 706  --NNIPTIASRWL--------QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
               +     S +L         R       +       R         +L      P   
Sbjct: 735  AVRDEDERPSAFLDVVADAAGLRTRADEEEEPGLATVPRAVSLPALVARLRQVVCAPDAV 794

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP------------ 803
                     A       +      +       + +     +    ++             
Sbjct: 795  ETPQRRAAAAARLAELAAAGVAGADPSEWYGVQELTDDGALRGPGEEVPVSPSRVESFER 854

Query: 804  ---------DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH-ID 853
                          G      I  L+ +  ++        +++ +D  +    LP   + 
Sbjct: 855  CGLRWLLESSGARPGDSTGQAIGNLVHRIASEAPEADAFELRRRLDLLWPTLGLPDGWVA 914

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913
               R    ++     E+    ++      V +   + ++     + G  DR++    G  
Sbjct: 915  ETARARALRMVDKLAEYHRDARAEGR-TLVGVELDVDVQVGRARVRGRVDRLERDAEGRA 973

Query: 914  DITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
             + D KTG   P +   ++   PQL +   A + G+F             + ++      
Sbjct: 974  VVVDLKTGKVQPSRAEVER--SPQLGVYQLAAQEGAFPAPPTGPTGTGGAVLVQLGGTQK 1031

Query: 973  CITNDKKKYSADELSEKSLKNLIEIVTL 1000
                  ++   ++       +L+     
Sbjct: 1032 KAPVQHQRALDEDDDPGWAADLLARAAE 1059


>gi|322373658|ref|ZP_08048194.1| ATP-dependent nuclease subunit B [Streptococcus sp. C150]
 gi|321278700|gb|EFX55769.1| ATP-dependent nuclease subunit B [Streptococcus sp. C150]
          Length = 1106

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 136/965 (14%), Positives = 274/965 (28%), Gaps = 137/965 (14%)

Query: 129  DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188
                +  L +             L D+   ++       DL  L   +         + L
Sbjct: 95   SHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTILDLQYLDQAE-------KQEDL 147

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMS 247
                    + L+  +  +     +      + HL K     + +I G T        L++
Sbjct: 148  VKIFSAAQDLLLAGDFDNQSKLSVFFEEINSGHLDKALSHTVLVIDGFTRFSAEEEALIA 207

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +  ++          A +        ++              L  L     +  
Sbjct: 208  LLNEKCHQIVIGTYASQKAYKANFVYGNVYQASVDF------------LRTLAQTYKVTP 255

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            + V       N  + R   + +S     T D + TD  +            + + E  N+
Sbjct: 256  DYVTT-DKEGNPSFARISHLLESRHDFSTIDEQLTDQDK----------EALQVWEVVNQ 304

Query: 368  REEAISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            REE   +A ++R  L + K+      L+  + +   +V     +F I         +S+ 
Sbjct: 305  REEVAQVAKSIRQLLADGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSH 364

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                 + SL            +  LVK  L      E                   N  D
Sbjct: 365  PLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFTQEDLDL----------FEYYVNFAD 414

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
            I      + D  A  ++              D +    L   +++ +  L+  +  K S+
Sbjct: 415  IKGRHKFLSDFTANSRDKY------------DLDRINALRSQLVEPLDKLLNSRKQKGSS 462

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                 ++    + V         +  +      E+  K  + L  +I         +  +
Sbjct: 463  LLKKLVAFLETVQVPSQMAALTAKASEAEKEQNEQVWKAFTQLLEQIETIFGDESLSVDD 522

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            ++ I+   +     +        + +      +  +   +   G+ +  +PK       L
Sbjct: 523  FLSILRSGMLACDYRTVPATVDVVNVKKYDLVQPHSAPYVFALGMTQSHFPKVGQNKSLL 582

Query: 665  SRVMQSDLNLKTAEKY--------IGQAAHDFEMAN---GTRHLIYTRSLRENNIPTIAS 713
            S   +S +N  T E            Q  H   M+     +  L+ ++    N      S
Sbjct: 583  SDEERSRINEATDEHRSLDIVTQSNNQRGHFVAMSLFNAASEQLVLSQPQILNETLDDMS 642

Query: 714  RWLQRLLVLGG---------------------------------------TDFFDNLKKR 734
             +L+ LL LG                                                  
Sbjct: 643  VYLKELLDLGISLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSQLDADLDKETQTFWSV 702

Query: 735  GQCYLD---------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
               YL              +D  T      +         +P   S S +    N+ Y  
Sbjct: 703  AVRYLRKRLDKDQVLIPNVIDDVTTTKVDDQVMQLVFPGEEPLKLSASALTTFYNNQYLY 762

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHF 843
            + R +L L+ +      PD    GT  H +   ++     +N  +           +  F
Sbjct: 763  FLRYVLGLEELESIH--PDARHHGTYLHRVFERVMGDSSLENFDDKLEKAIAQTNQEQPF 820

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
            E          + R +   I+ S         + ++         + +    I +TG  D
Sbjct: 821  ELLYTEDQESRLSRQILEDIARSTASVLR-DNAFVKVEREEAKFDLLLA-NSIKITGIID 878

Query: 904  RIDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANL 960
            R+D L  G + + DYK+G N      QK    + PQL     AL+     ++D  ++   
Sbjct: 879  RVDRLTDGALGVVDYKSGKN--VFDIQKFYNGLSPQLVTYLEALRQT--YKVDANQLFGA 934

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
             Y+ ++          +  ++  D+L+  + K L     L    E   ++      +  +
Sbjct: 935  MYLHMQDP------QLNLAQFGLDKLAAHAHKELT-YKGLFVASETEHLAGGNYDLQKTV 987

Query: 1021 QSEYD 1025
               YD
Sbjct: 988  --TYD 990


>gi|94970648|ref|YP_592696.1| DNA helicase/exodeoxyribonuclease V, subunit B [Candidatus Koribacter
            versatilis Ellin345]
 gi|94552698|gb|ABF42622.1| DNA helicase/exodeoxyribonuclease V, subunit B [Candidatus Koribacter
            versatilis Ellin345]
          Length = 906

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 94/757 (12%), Positives = 207/757 (27%), Gaps = 95/757 (12%)

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
             R     ++      +      +L  +  + +     +A     +  +E  + A+  R  
Sbjct: 183  DRFTPAQEALWRALRNAGCEVTVLAPESESNKDHARGLA---CADPSDEIRTSALWARKK 239

Query: 382  LDENK--KKSALITADRNLARRVKLELTRFGIN-------------IDISAGIPLSTTLH 426
            L+EN   +   ++     L                            +IS G PLS    
Sbjct: 240  LEENPSARVGVIVPRLEGLRETFATIFEDVLHPENRLLTRTATARAFEISLGRPLSEHPM 299

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
                  +L       +    + L++      G  E       +                 
Sbjct: 300  VRAALRILRLATSSLNAEEFSALLRSRYIAGGTNEASARALVD----------------F 343

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            +L+  +   +   +  +     +   + +  ++                     K +  G
Sbjct: 344  ELRRKLRATVTLAQVLSGKAEEKVVGAPKMAKMLRAF---------------FAKPAKTG 388

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
             L+ ++W       L+ +         +L  EE   +                       
Sbjct: 389  KLTHTEWAAEAQRILRIMGWPGDEGEFSLNSEEFQVSKKWEELLKDFCALDQALPLKTAS 448

Query: 607  DIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            +++  L           ++    + I+G L +    FD L   GL++  WP+    NPF+
Sbjct: 449  EMLRELERAAAEATFAAENEAAPVQIVGPLAASGETFDALWFCGLSDETWPQKGHPNPFI 508

Query: 665  SRVMQSDLNLKTAEKYIGQ---AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
               +Q                       +       + +   R ++     S  L  +  
Sbjct: 509  PFALQKSAGAPNTSAEWNLRDGERRTARLLQSANECVLSWPQRNDDGELRPSPLLAGVP- 567

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                   +    R    L     L+    +              + +    + ++     
Sbjct: 568  --PATDLEIADVRDWNSLQKGALLERYDDEKAPAIA------NEELKRRGTTVLQWQSGC 619

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE----------- 830
            P+  +A+  L  + +       +  +RG +    +  + ++    +              
Sbjct: 620  PFRAFAQTRLAAEKLEESPLGANAIERGNIVDTALRFVWEELRESSNLNGGIPTMTLEFV 679

Query: 831  INHLMKQIIDSHF--EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
            I   +++ +   F   +E+       I R    K+ H +L+ E K               
Sbjct: 680  IAGAIERALLEEFPSGEESWLVRHREIERERLSKLVHDWLDVERKRHPFHSVR---SQVN 736

Query: 889  MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETAQKLIDPQLSLEAAA-- 943
            + ++   + L G  DR+D    G   + DYKT             +  +PQL + A    
Sbjct: 737  VTVKLGELELKGRIDRLDQTVDGEYVVIDYKTTRKDLATSLWEMPRPQEPQLPIYAVGQQ 796

Query: 944  -----LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND-KKKYSADELSEKSLKNLIEI 997
                 +   +F+Q+   K     Y  L  + +I   + +  K     E        L ++
Sbjct: 797  LESHEVAGVAFAQVRAGKPK---YSGLATRKEIFGDSKNLAKFGEFAETLATWQPELEKL 853

Query: 998  VTLLQNGEQPFISHLRLS--EKSNIQSEYDHLARVAE 1032
               L  G       +       +        L R+AE
Sbjct: 854  AGELLAGHAEVDPKVPPGVTNTTCRHCHLGSLCRIAE 890


>gi|160872018|ref|ZP_02062150.1| conserved hypothetical protein [Rickettsiella grylli]
 gi|159120817|gb|EDP46155.1| conserved hypothetical protein [Rickettsiella grylli]
          Length = 889

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 99/729 (13%), Positives = 212/729 (29%), Gaps = 111/729 (15%)

Query: 346  ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405
               +P+ +  +  +AL    + ++   +I   +   ++       + T            
Sbjct: 214  RISLPDKETEYQTMALWAYQSFQQSKKNIGCLIPHLVERRTHLLTIFTDIFTECAP--HS 271

Query: 406  LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
            +       +I+AG PL           +L+       F ++ +L++ P       E+   
Sbjct: 272  IDP--PPFNIAAGNPLLEFGLIQTALLILDLKAIN-TFSSLHSLLRSPYIGGFQREQSPR 328

Query: 466  RAKNA-LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
             + +  L     R + N    +  +        + K    +    +              
Sbjct: 329  ASLDIFLRGAENRLSLNQLITISEEQTCFILSRSLKTLLGLIKKYTCHFLAKP------- 381

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
                                      S W+   V  L        R      ++     L
Sbjct: 382  --------------------------SFWSAYFVKKLHAFSWPGDRPFIREEYQ-----L 410

Query: 585  SSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKS-STLFILGTLESRL 638
               +S+++   + +     + +    +  +   I     + K       + +LG L++  
Sbjct: 411  LDCWSELLTAFAGLDFILGEISHDTALRHLRCHIANTLFQMKTLHDDPPIQVLGLLDAAG 470

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-----G 693
            + FD L + G ++  WP     NPF+   +Q             +  +   M        
Sbjct: 471  MYFDELWVMGFDDKTWPAPAKPNPFIPYALQR--GQPIPSSSSEREYYFAAMLTKNLTAH 528

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
             + LI++ + +  +     S ++Q L  +   D           Y    +K+  + +  +
Sbjct: 529  AKKLIFSTAKQHLDETLRPSVFIQSLPEIKLNDL------HLPPYSTMAKKIMESQEWEY 582

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD--FIPHFKKDPDRTDRGTL 811
            Y         +          ++     P+  +AR  LK             D  +RG L
Sbjct: 583  YSDECIALTEDNFISG--TQLLQSQAACPFQAFARWRLKARTHPFFPQNNGLDARERGIL 640

Query: 812  FHNIITELIKKRINKNT------PEINHLMKQIIDSHF------EKENLPPHIDIIWRHL 859
            FH ++ +   K  N+ T        +N  +   I++               +   + R  
Sbjct: 641  FHRVLEQFWNKIKNQETLLSLTQHALNQHIHDAINTCLKIWSKKRPIIFKTYFATLERQR 700

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
               +  + ++ E++      +        + +      L+   DRID L      I DYK
Sbjct: 701  LSSLLSTLIDLEKQR-PHFSETQHEKKQHLKL--GPFILSLRIDRIDKLDGNDAMIIDYK 757

Query: 920  TGDNPKKETAQKLID-PQLSLEAAALKAGSFSQIDCRKVANLFYI--------------- 963
            T    K +   +  D PQL L             D + V +                   
Sbjct: 758  TSRPQKIDWLDERCDYPQLPLYCL---------SDPKTVRSFSVWYCHRNRITLKGLSEE 808

Query: 964  --RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
               LK    +  +      +   +L +    +L ++    Q G      H +    +  Q
Sbjct: 809  ETSLKPLTPLKKLKTSHALHHWSDLLKHWQLSLEKLALEFQQGVN--HIHPKRGATTCRQ 866

Query: 1022 SEYDHLARV 1030
             +   L RV
Sbjct: 867  CDLQLLCRV 875


>gi|261405599|ref|YP_003241840.1| ATP-dependent nuclease subunit B [Paenibacillus sp. Y412MC10]
 gi|261282062|gb|ACX64033.1| ATP-dependent nuclease subunit B [Paenibacillus sp. Y412MC10]
          Length = 1176

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 111/1031 (10%), Positives = 262/1031 (25%), Gaps = 135/1031 (13%)

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
              +   G +  +   + S   +           +      +S   + + L +++   + +
Sbjct: 50   ALVNAGGIRGMMRAQVLSFRRLAYRVMQETGGAA---KVAISEEGKRMLLYKILRRRKEE 106

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKY- 177
            L                            L+++   ++          E L  + +    
Sbjct: 107  LHMFGASGEQH-------------GFVGKLSELYTEMKRYCIDASCVEEQLGQMVSGSGN 153

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
                    + +    + +   +             +L     E         I I G  G
Sbjct: 154  SPMLRRKLEDIVTVFRDFEVEISRFY-MDEEDTLASLAEGVTESEYIKRAD-IWIDGFHG 211

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
              P   R++  +  H     +   LD                 +   + T  T+    L 
Sbjct: 212  FTPQEYRVLQEIIVHAKRVTIALTLDKPYRN------GTVPHELDLFHPTAVTYI--KLK 263

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
             ++D + ++ E      +V        M+                D   +   +  +   
Sbjct: 264  GIIDEIGLEAEHRILHPDVLPRFQESPMLAHLERGYDRKKRWAEPDEGPDTASSPNRGRK 323

Query: 358  DVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINI 413
             + L  A + R E       +     E      + +  +    +    +      +G+  
Sbjct: 324  GLLLHAASHRRAEIEGALREMLRLAQEEGARYREMAVFVRNMGDYEHLMGPLFREYGVPY 383

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
             +              + S L+ I +   +  +   VK  L              + LE 
Sbjct: 384  FLDQKRSELHHPLVEFIRSALDVIGRRWRYEDVFRCVKTDLLLPLDGSLT-REDMDRLEN 442

Query: 474  VALRGNKNSYDIMDLKSL--VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
              L          D +    V      +  +           E  +++    +    + +
Sbjct: 443  HVLASGIQGTRWTDGRPWKGVPSLSLEEGESEIRNQDGMAAIEYARKVITEPLHAFEKRM 502

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
                +      +    L      +     L    LD  R        +    +  L  +I
Sbjct: 503  KKAASATDQSTAVYRLLEECAVPEKL-ELLSRAALDAGRPEEAREHRQVWGAVLGLLDQI 561

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            +E     K +   +  ++   +    +         + I     +R        L G+N+
Sbjct: 562  VEMMGAEKLSTELFTGVLGTGLTEMKMALVPPSLDQVLIGSMDRTRTGGVKYAFLLGIND 621

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF--------EMANGTRHLIYTR-S 702
            GV P     +  L+   +  L  +  E     +             + + ++ L  +  +
Sbjct: 622  GVLPAQFQDDGILTEPERVHLEDRGLELAPSISRRLLDERFLIYNALTSASKQLWVSYPA 681

Query: 703  LRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH------- 753
              +   P + S  ++ L ++     +        GQ  L+         K          
Sbjct: 682  ADDEGKPLLPSEVVRHLKLMFQLEEEPLFPRPHAGQSALEQEGYAVRPDKTLAYLAGRLR 741

Query: 754  -------------------YKRPKPFPPLEAQPRTYS----------------------- 771
                                ++P   P L     + S                       
Sbjct: 742  DWRNGEEIPDLWWHVYNWYAEQPGLRPRLTTMLSSLSYRNEARPLKLETSRQLYGTKLRT 801

Query: 772  -FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII-------TELIKKR 823
              S +++ +  P++ +A   LKL             D G LFH  +           +  
Sbjct: 802  SVSRMERFVACPFSHFASHGLKLRERQ--LYRLQAPDIGQLFHAALSSMAVKFQSQHRSW 859

Query: 824  INKNTPEINHLMKQIIDSH---FEKENLPPHIDIIWRHL-FHKISHS--FLEHEEKIQSS 877
             +    E     +  +D      + E L       +       I      +  E+  +  
Sbjct: 860  GDLTAEECLREAEATVDRLAPMLQGEILLSSKRYGYISRKLKNIVGRASVILGEQARRGK 919

Query: 878  IEKIFVNIPAK---------MAIESIG-IHLTGFADRIDLLKSGF---VDITDYKTGDNP 924
             E I + +              + +   + + G  DR+D+ +      + + DYK+    
Sbjct: 920  FEPIGLELDFGPGKPLPPLAFELPNGTKMEIVGRIDRVDMARGEHGIMLRVIDYKSSQKD 979

Query: 925  -KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYS 982
             +       +  Q+      L   +   +  +   A   Y  +      D +       +
Sbjct: 980  LRLHEVYYGLSLQMLTYLDVLLTFAEEWLGEQALPAGTLYFHV-----HDPVLQSANGMT 1034

Query: 983  ADELSEKSLKN 993
             ++ +E+ LK 
Sbjct: 1035 PEQAAEELLKR 1045


>gi|171463386|ref|YP_001797499.1| inactivated superfamily I helicase-like protein [Polynucleobacter
            necessarius subsp. necessarius STIR1]
 gi|171192924|gb|ACB43885.1| inactivated superfamily I helicase-like protein [Polynucleobacter
            necessarius subsp. necessarius STIR1]
          Length = 991

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 167/1084 (15%), Positives = 310/1084 (28%), Gaps = 156/1084 (14%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
             K+P  + I P+S    ++   + +  +  N R             + + T   +  +R+
Sbjct: 11   QKQPQAWAITPNSQALAQLARGVWDCAVQTNQRP-----------LVVLSTAGPLIGVRA 59

Query: 63   EFIE----ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118
               +            LP + S  D +E         ++      S+++R L +   +  
Sbjct: 60   ILEQNRPKDLLSSIAFLPQVISFTDWLE-----AAPGAWKFPKKQSDLERWLGVYATLRK 114

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
             +N                   + + A  LA+ +    D              L      
Sbjct: 115  HKNLQA-----------WFKAETESGAWGLAQAIVKACD-------------TLSTAVSS 150

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238
                    F++            L        Q +L                    ST +
Sbjct: 151  QVQKQILGFIQKNQ----AETSNLGELCLSEAQASL-------------------DSTVA 187

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
               +      V       +        +    +      +T++ +  +     P      
Sbjct: 188  KVYSGMACKIVDQETKVLLEFWRYTASVSDPAFRNQFAIATHLEAIKSANPARPLI---- 243

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
             ++  D    D + +G + NE    + VI       D      +   E+      +   +
Sbjct: 244  WVETADPTPIDQEIIGALLNEYAQYAPVIEVKMDWHDVGLWSESIGAEDGDQARTQALEN 303

Query: 359  V--------ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
            V         LI A    E A + A  +   L   K   AL+  DR +ARR +  L+R G
Sbjct: 304  VKRTQNKGWRLIAAKRFEELAWAAAKTIEQHLINGKTNLALVAQDRLVARRARALLSRLG 363

Query: 411  INID--ISAGIPLSTTLHSSILTSLLNAIFKLND---FMAIATLVKHPLAKFGFPEKYLS 465
              ++     G  LSTT  ++ L S L  I    D      +   +++P            
Sbjct: 364  PALNIRDETGWKLSTTRAAAALNSWLELIKAPKDGPSAKTLLEFLQNPFL---------- 413

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                 L  +  R  +          L+         +     W++     +        +
Sbjct: 414  ----DLGKILNRDAEACIG------LIAGLEDILVGSKAESGWKTFHIAIEGAQVNAAKN 463

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
                  T L                          L  V L       +L  +  GK L 
Sbjct: 464  ASAMPGTVLFELLQFARERHHEWLTLQVDCNKAYQLLQVNLQATGMAQSLEKDSAGKQLL 523

Query: 586  SLFSKIIETGSCI---KANAIEWIDIITRLIDGETVKPKI-EKSSTLFILGTLESRLLNF 641
             +      + +          EW+ ++  +I+G + +    E  +TL IL    +R+ +F
Sbjct: 524  EVLKTFDLSKTQYQQTSVRLSEWLSLLKTVIEGASYQEAGKEAKATLSILPLSSTRMRDF 583

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYT 700
            + +++ G +E   P  +    F S  +   L   T      Q + D          +   
Sbjct: 584  EAVVVVGCDEQQLPAYSEPPLFFSDALNQLLKTSTIAMQFVQQSRDLSQLLVSCPSVDLL 643

Query: 701  R-SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
              S   N  P   S W+QRL      +      K+                 P       
Sbjct: 644  WQSKSNNGEPLRPSAWIQRLQNQVEWEAIPVQLKK-----------RAFEATPMVMTVAH 692

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
            F      P + S S  K L + PY  Y R +L L     F +  D +  G   H ++   
Sbjct: 693  FEEDLPMPLSMSPSAYKALRDCPYRYYVRSLLSLRKNKEFDEGFDASLAGQTLHKLLKRF 752

Query: 820  IKKRI-----NKNTPEINHLMKQIIDSHFEKENLPPHIDIIW--------RHLFHKISHS 866
                      N +        +  ++      +      +I            + K   S
Sbjct: 753  YHALKTHELTNPSLKTDEDQRRAWMEQSLNDYSEQEFAALIEGDARVMGTLRDWQKQIPS 812

Query: 867  FLEHEEKI-QSSIEKIFVNIPAKMAIESIG-------IHLTGFADRIDLLKSGF--VDIT 916
            F++ + +  Q+  E     +     +           I + G+ADR D+         + 
Sbjct: 813  FIDWQLQREQAGWEYFDGEVKVGFNLPFQDADGNIKMIRIEGYADRYDVNVDNSKIASVI 872

Query: 917  DYKTGDNPKKETAQKLI--DPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQK--FKI 971
            DYK     K +   + I  DPQL + A AA +    +++   +V    ++ LK       
Sbjct: 873  DYKNQRFEKVKARAEHILDDPQLLIYAKAANEEQESNKLTGYQVQQAEWVALKADISKGE 932

Query: 972  DCITNDKKKYSADELSEKSLKNLIEIVTLL--QNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
                  ++      +  +    + E V  L  +   Q F       E      E   + R
Sbjct: 933  QKAVRSQEVADMPAIMRQFTVQMTEDVEQLWAKKPMQAF-----APEGICQYCEARGICR 987

Query: 1030 VAEW 1033
               W
Sbjct: 988  KGIW 991


>gi|239815307|ref|YP_002944217.1| exonuclease-like protein [Variovorax paradoxus S110]
 gi|239801884|gb|ACS18951.1| exonuclease-like protein [Variovorax paradoxus S110]
          Length = 864

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 115/816 (14%), Positives = 214/816 (26%), Gaps = 78/816 (9%)

Query: 233  AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
            AG      A A  +  +A            +                   S      +  
Sbjct: 103  AGFAAERFALAGRVVELAYQLAPLAAAALPEVRGSEWAQRAAQVADAGSESEWFRIESAL 162

Query: 293  QYSLAKLLDFLDIKREDVKRLG-NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
                           + + R       +            L      +     +   +  
Sbjct: 163  IRVAVAWAANSGYATDVLLRDTVRAQVDALIVLEGFQADPLTQTLCSLWGDRAIHLSLVP 222

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                 +  A   A +  +EA   A  +   L E +   ALI  DR L RR+  +L   G+
Sbjct: 223  ASPAATTAAAHVAADPEDEAELAAACVLRHLAEGRAPVALIATDRALTRRIGAQLQAQGV 282

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
                  G  LSTT  ++ + S L A         +   +K                    
Sbjct: 283  TAHDETGWKLSTTRAAATVMSALRACAHDAGSDQVLEWLKSG------------------ 324

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                           D  +L    +  +     V  W +   +  +      +  +    
Sbjct: 325  --------------ADGDALATQALEARLRREGVREWSAWCGQAARSEKPQDIALLPFT- 369

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK-TLSSLFSK 590
                  +  + +   +  ++DW +     L+     E         +  G   L +    
Sbjct: 370  ---EAVEGRRMAMARSRPLADWLRALRELLEAGEQWEPLAADMAGAKVIGALWLDADAHG 426

Query: 591  IIETGSCIKANAIEWIDIITRLIDGET-VKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
              +     +    E+   +  +++  + V P   ++  + +L   +     F  +++ G 
Sbjct: 427  DDDEFPGGRHTLAEFTAWVRDVLEDASFVPPAGNEAPQVVVLPLHQLLGRAFGAVVIPGC 486

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRENNI 708
            ++   P +       S   +++L L   E         +  A       +  R    +  
Sbjct: 487  DDRRLPASPEPPGNWSAAQRAELGLPARETLEAAQRSAWAAALCNPCCEVLWRQSDASGE 546

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
            P   S  +Q L +                 L          +        P P  E  P 
Sbjct: 547  PVRPSPLVQALQL--------------DHALQMAADPRTPREVALQPTAYPTPSGELLPL 592

Query: 769  T-YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
               S S  + L   PY  +A R L L        + D+ D G   H  +    +    K 
Sbjct: 593  RNISTSVYEDLRRCPYRFFALRQLGLRSADELDAEVDKRDFGNWLHAALGHFHEALKEKP 652

Query: 828  TPEINHL---MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            T +       +    +    +  L     + +   +  +   +L+     ++S   +F  
Sbjct: 653  TSDAAERVAYISAAAERATREFGLSDAEFLPFAAAWPAVRDGYLQWLAGHEASGA-VFAE 711

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT-GDNPKKETAQKL-IDPQLSLEAA 942
                M      + L G  DRID +  G   + DYKT      KE  +    D QL+  AA
Sbjct: 712  SEPWMEQPLGSLQLVGRLDRIDRMPDGQAFVIDYKTESAAVTKERVKDPTEDTQLAFYAA 771

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA-DELSEKSLKNLIEIVTLL 1001
             +                 Y+ + +K              A D L    L +   I    
Sbjct: 772  LVAD---------DTLRAAYVNVGEKSSGTQTVEQPVVVEARDALVAGILDDFTRIAEGA 822

Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
                    +                L R   W  E 
Sbjct: 823  ALPPLGEGA-------VCDYCAARGLCRKDFWEIEQ 851


>gi|161830979|ref|YP_001597081.1| hypothetical protein COXBURSA331_A1374 [Coxiella burnetii RSA 331]
 gi|161762846|gb|ABX78488.1| conserved hypothetical protein [Coxiella burnetii RSA 331]
          Length = 862

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 105/698 (15%), Positives = 214/698 (30%), Gaps = 76/698 (10%)

Query: 360  ALIEADNEREEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGI----NID 414
              +   N   E  ++A         E  +K   +  D    R   L L         + +
Sbjct: 214  RRVNFQNSEMEIQTMARWAYAQWEKEPNQKIGCVMPDLTQHRTQVLRLFTEIFGSSEHFN 273

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
            IS    L+    + I    L       D M + T+ +         +             
Sbjct: 274  ISVAESLTQIPLTQIALKCLELDPFKIDIMQLGTVFRSSYINSRTVDVC----------- 322

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV--LLVDHILQCIT 532
                         L + +  ++    +    P +      + +       L       + 
Sbjct: 323  -------------LAAQLDVKLRESAHWQANPAFILYHLHQLQPHFQSTTLTTRCQTWL- 368

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
                       +   L  S W +     L  +     R L +  +++  +  + L     
Sbjct: 369  --------SKRSSTRLFPSAWAQQFSEELTAIGWPGQRSLDSKEYQQWKRWENLLHEYAA 420

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
                  +      + ++ +L      +P   ++S++ ILG LE+    FD L + GLN+ 
Sbjct: 421  LDTFTQQQTRKNALQLLRQLAHHTLFQPMSSQNSSIQILGLLETTGHYFDKLWIAGLNDK 480

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIP 709
             WP+  + NPFL   +Q    +  A                      +I +  L+E +I 
Sbjct: 481  KWPRVASPNPFLPLSLQRRCQMPHASAKREMEYTLQLQNRLLKSAPAIILSAPLQEGDIQ 540

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
               S  ++    +   D       +   +      L         +  +     E +P +
Sbjct: 541  LSTSPLIRHFPEINNEDL------QLTAWQPLKAHLFKIKMLETIEDAQAPALQENEPMS 594

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
                 ++     P+  +A+  L+   +       +  +RG   H  +  + KK  +  T 
Sbjct: 595  GGSGLLQSQSICPFQAFAKVRLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTL 654

Query: 830  E--INHLMKQIIDSHF-----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
                +  ++ IID        +++ + P      +    ++  ++L  E+K     E   
Sbjct: 655  NSSSDGELENIIDETITHLISQEKLIQPLFLNTEKKRLKQLIKNWLLLEKKR-PPFEVSQ 713

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLE 940
                  + I    + L    DRID        I DYKTG     +     +L   QL L 
Sbjct: 714  RETKRHIKI--GPLRLEVRIDRID----NNCFIIDYKTGGQNSVDDWFGDRLKSIQLPLY 767

Query: 941  -AAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
             A A +     +++++  +K+     I   +KF            + +EL  +    L  
Sbjct: 768  CAYAAREATGIAYAEVRSQKMTFKGLISANEKFNSFSEVK-PSPLAWNELIRRWKMQLYH 826

Query: 997  IVTLLQNGEQPFISHLRL--SEKSNIQSEYDHLARVAE 1032
            +     +G+    + +    S+          L R+ E
Sbjct: 827  LAVDFSSGK----ADVDPLDSKTVCKVCHLHSLCRIGE 860


>gi|210617938|ref|ZP_03291824.1| hypothetical protein CLONEX_04056 [Clostridium nexile DSM 1787]
 gi|210149077|gb|EEA80086.1| hypothetical protein CLONEX_04056 [Clostridium nexile DSM 1787]
          Length = 1134

 Score =  180 bits (455), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 110/904 (12%), Positives = 239/904 (26%), Gaps = 121/904 (13%)

Query: 150 KNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
             +  +I      + + E L  +  E K           +K     + E L E   +   
Sbjct: 120 GEVKSVISEFTQYDIQEETLEQMIEEVKDSSNLYYKLQDIKTIYHGFREYLREKYIT--G 177

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              + ++              +++ G TG  P   +L+  +       ++   +      
Sbjct: 178 EELLDVLCTVVGESKILKDSVVVLDGFTGFTPVQNKLLRELFGVCKRVVIT--VTMEQKE 235

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             ++          S              +++  L    ++ K        +Y R +   
Sbjct: 236 NPFSYKHPYQLFALS-------------KQMVTSLITIAKETKTDVEEPIYLYDRPIYRF 282

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-- 386
           +        +       + +    Q C   + +  A N +EE    A  +R         
Sbjct: 283 RENTALAFLEAHLFRYSKEQYEKEQDC---IQVYCAKNPKEEVDFAAQKIRNLARTRGYR 339

Query: 387 -KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
            ++ A+I +D N            + I I +     +        + SLL  + +   + 
Sbjct: 340 YREIAIIASDLNTYGNQIEKIFGEYQIPIFMDHKRSILLNSFVEYVRSLLAMVEQNFSYE 399

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
           ++   ++  L  F   E              +     +  I   K      I   +    
Sbjct: 400 SVFRYLRTGLTGFSDEEID-----------IVENYVIALGIRGYKKWQEKWIRRARGMEE 448

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
               +    +E     + + D  +       T      +    L   +  K         
Sbjct: 449 TELERINDIKERF--LIQVEDVTMVLTKRNKTVSEVTKALYDFLVKEELQKKVKEYEIRF 506

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
             D         + +  + +  LF K +E     +    E+ +++   ++   V      
Sbjct: 507 GNDGELA-LEKEYGQVYRIVIELFDKFVELLGEEQIALKEYCELLDAGLEEAKVGVIPPS 565

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAE 678
              +       +R+ +   + L G N+   P        LS   +             A+
Sbjct: 566 LDQVVAGDIERTRIKDIKAVFLLGANDMYIPGKENAGGILSEHDRELFQKGGVVLAPGAK 625

Query: 679 KYIGQAAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKR- 734
           +          +     +  L  T S    +      +  +Q L  +       +   + 
Sbjct: 626 EKAFIQKFYLYLLMTKPSEQLYVTYSKVSADGKTLRPAYLIQDLRRMYKKMEIQDADCQP 685

Query: 735 -------------------------GQCY----------LDWTRKLDYTTKQPHYKRP-- 757
                                    G  +            W +K++   +   Y++P  
Sbjct: 686 DKKELTPKSGFAYLIEKLQKKHEGLGTEWQELYTWYRQNPKWRKKIEQIVEACFYEKPKD 745

Query: 758 ----KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
               +    L       S + +++     YA +    L L      +      D G +FH
Sbjct: 746 GLTTRTAQRLYGTILENSVTRLEKFSACAYAHFLSYGLNLRERE--EYTFQAIDLGNIFH 803

Query: 814 NIITELIKKRINKN-----TPEINHLMKQIID------SHFEKENLPPHIDIIWRHLFHK 862
           + I    KK   +       PE+                +          +        +
Sbjct: 804 SAIEHFAKKLEAEGYTWTTLPEVRREELIEESVEESIVDYGNTILYSSARNEYIIKRLKR 863

Query: 863 ISHS--FLEHEEKIQSSIEKIFVNIPA---------KMAIESIG-IHLTGFADRID--LL 908
           +     +   ++  +         I            +A++  G + L G  DR+D    
Sbjct: 864 MMRRTVWALTKQLEKGDFMPGGYEISFGGASGLSTSDIALDGHGRMRLRGKIDRVDICED 923

Query: 909 KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDC-RKVANLFYIR 964
           +      + DYKTG            +  QL L    AL+  S          A +FY +
Sbjct: 924 EDNVYVKVIDYKTGAKAFDLGELYYGLQLQLVLYLNTALELESRKNHGKTVIPAGIFYYQ 983

Query: 965 LKQK 968
           +K  
Sbjct: 984 MKDP 987


>gi|73663118|ref|YP_301899.1| ATP-dependent nuclease subunit B [Staphylococcus saprophyticus subsp.
            saprophyticus ATCC 15305]
 gi|123642146|sp|Q49WA5|ADDB_STAS1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|72495633|dbj|BAE18954.1| putative ATP-dependent nuclease subunit B [Staphylococcus
            saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1153

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 118/986 (11%), Positives = 269/986 (27%), Gaps = 136/986 (13%)

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-ALKNEKYGMWWLLAADFLKIA 191
            +S L L  S       ++ L + I   +      + L   +               + + 
Sbjct: 104  QSELRLYQSQVKYYGFSEKLYEQIQDFKKYAVSPQQLETYIAENNLQTRTKHKLQDIALV 163

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             K+  +R+     S+    Q  +   +    +K  +  I I G         +++ ++  
Sbjct: 164  YKHLEDRINGEYVSTEDSLQRFIEMMDQSEWLK--RAEIYIDGFHNFSTLEYQIIQSLVK 221

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
            +     ++   D                ++    +   TH +    ++ + L+I+    +
Sbjct: 222  YAKKVTIVLTTD----------GDRDLFSLFRKPSESLTHIE----EIANNLNIQLHSRQ 267

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
             L         R +      L  + + ++   I             +V ++EA   REE 
Sbjct: 268  FLDVQ------RFIHNDLKHLEQNFNALQFEPIP---------TEGNVEILEASGMREEI 312

Query: 372  ISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
              +A  +     E  +     A++  D + A  ++  L ++ I  +I     ++      
Sbjct: 313  NEVARRILRENREQGRRFQDIAILYRDESYAYLMESILPQYDIPYNIDVKSSMTHHPIME 372

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            ++ SL+  I     F  +  L K  +    F +       + LE   L         +D 
Sbjct: 373  MIRSLIEVIQTGWQFDPLMRLFKTNILTKKFKDSQYL--IDILENFVLERGIYGKRWIDD 430

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP----LVTYKTNKNST 544
            K   +++             + R + E        V   +           T      + 
Sbjct: 431  KYFDIEQFRKMGLKRQPLTDEERETFERVIQLKNDVMKKVMLFEEKINNASTAIAFATAF 490

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               +   D     +T    + ++          ++    L  +   ++        +   
Sbjct: 491  YEAMEAFDLPSQLMTDRDTLDVNGE-HKKAEEIDQIWNGLIQILDDLVTVFDDQSMSKTR 549

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            ++++    ++        +    + I     +++ N   + L G N+GV P+    +  +
Sbjct: 550  FLELFDIGLEQLEFIMIPQTLDQVSIGTMDLAKVDNKQHVYLVGANDGVLPQTVTASSLI 609

Query: 665  SRVMQSDLN-------LKTAEKYIGQAAH--DFEMANGTRHLIYTRSLRENNIPT-IASR 714
            +   +             TA+      A      M     H+ ++ +L   +      S 
Sbjct: 610  TDEEKKYFQEQSSIELSPTADILQMDEAFVCYIAMTRSRAHVTFSYALMGASGDVKEPSP 669

Query: 715  WLQRLLVL------------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------ 756
            +L ++  L               +    ++   Q  +     L                 
Sbjct: 670  FLHQIQQLYTNLEVQNIHHQHQAEPLRLMEHPHQTKIALFESLKAWLDDELVAETWLDTY 729

Query: 757  ------------------------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                                          P     L       S S  +     P+  +
Sbjct: 730  QVMRNDTRLNDGLTYLLSALTYDNQTVQLNPSLSKALYGSTINASVSRFEGYQACPFKHF 789

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            A   L+L+     K   +  D G +FH ++  + +K            + ++      + 
Sbjct: 790  ASHGLRLNER--TKYKLENFDLGDIFHRVLKFISEKVNGDFKNLNPKQIHKLTTEALSEI 847

Query: 847  NLPPHIDII--------WRHLFHKISHSFLEHEEKIQS--SIEKIFVNIPAK-------- 888
                  +++               I  + L   +   S             +        
Sbjct: 848  LPEVQFNLLNSTAYYRYLSQRIGAIVETTLTALKYQGSHTKFTPQRFEASFRRKPKDQSE 907

Query: 889  ------MAIESIGIHLTGFADRIDLLKSGF---VDITDYKTGD---NPKKETAQKLIDPQ 936
                     + I I++ G  DRID  + G    V+I DYK+               +  Q
Sbjct: 908  LLATPLQTKQGIPINIRGQIDRIDTYQQGDESFVNIIDYKSSKYSGTLDLTKVYYGLQMQ 967

Query: 937  LSLEAAALKAGS--FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            +      +          D  K   L Y  + +           +     E        L
Sbjct: 968  MMTYMDIVLQNKSRLGLTDMTKPGGLLYFHVHEPRIKLAWNQLSEDKRDTEFINSFK--L 1025

Query: 995  IEIVTLLQNGEQPFISHLRLSEKSNI 1020
              ++    +    F + L  S  S+I
Sbjct: 1026 SGLLNSATSVLDAFDTRLEPSYNSDI 1051


>gi|330721703|gb|EGG99704.1| RecB family exonuclease [gamma proteobacterium IMCC2047]
          Length = 464

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/468 (17%), Positives = 163/468 (34%), Gaps = 44/468 (9%)

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            ++TR++     + +  ++  + +LG LE   LNFD + L GLN+ +WP     NPF+   
Sbjct: 3    LLTRVLGSTDFQAQTPQTP-IQVLGMLEGSGLNFDAVWLVGLNDHLWPAAANPNPFIPIP 61

Query: 668  MQSDLNLK--TAEKYIGQAAHDFE-MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
            MQ    +   + E+ +  +        + +  +I + SL   + P  AS  +   +    
Sbjct: 62   MQQQFAMPHASPERELQFSRELLRDYLHSSAQVIASYSLNNGDEPLRASSLIDDFVATTK 121

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHY-KRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                         Y +     +       Y     P   ++ +      + +K     P+
Sbjct: 122  DQLNLVTDTSHPFYRELANSSESFRALEPYNDDTGPTLNIDTERVVGGSALLKDQAACPF 181

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL--MKQIIDS 841
              +A   L    +P      D   RGT+ H  + +L     + +T        ++Q +  
Sbjct: 182  RAFANHRLSARDLPEPSYHLDAAQRGTVLHAALEQLWLTLKDSSTLIARDATVLQQDMSD 241

Query: 842  HFEKENLPPHIDI----------IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
               K   P                      ++   +L+ E+   +  + +       + I
Sbjct: 242  AVRKALKPLIAQRDDLFGAVYTDNEAQRLQRLLARWLQIEKSRSA-FDVVATEKALVINI 300

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFS 950
              + + +    DRID L  G + + DYKTG  +  K   ++L +PQL L    +   S  
Sbjct: 301  ADMPLRV--RVDRIDRLDDGSLMLIDYKTGFCSTSKWQGERLEEPQLPLYMVTMAGISEP 358

Query: 951  QIDCRKVANLFYIRL-----------------KQKFKIDCITNDKKKYSADELSEKSLKN 993
            Q +  ++ +L + R+                    + I+         S  +++++ L++
Sbjct: 359  QGEQDRIESLAFARINIDQQGFVGISAQEGVAAGVYSIEKSRGWDASLSWSDINQQWLQS 418

Query: 994  LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV---AEWREEYD 1038
            L  +       +    +   L   +        L R+    E   E D
Sbjct: 419  LESLANEF---KTGVATVAPLQNNTCQFCHLHSLCRIHQLNELSSEAD 463


>gi|306831078|ref|ZP_07464239.1| ATP-dependent nuclease subunit B [Streptococcus gallolyticus subsp.
            gallolyticus TX20005]
 gi|304426644|gb|EFM29755.1| ATP-dependent nuclease subunit B [Streptococcus gallolyticus subsp.
            gallolyticus TX20005]
          Length = 1082

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 123/1044 (11%), Positives = 279/1044 (26%), Gaps = 150/1044 (14%)

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
                +    K        +   +  EK  A L L  +       + R  ++AR   +   
Sbjct: 19   EAVAQADAGKRVF---YIAPNSLSFEKERAVLELLPDEASFAITVTRFAQMAR-YFVLNE 74

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAK---------------NLADIIDIIETEEKKW 166
                + + +       +     +                      L D+   ++T     
Sbjct: 75   AQAQVKESIDDNGLAMIFYRALSHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTV 134

Query: 167  EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
             DL  L             + L        + L+     +         + EA HL    
Sbjct: 135  LDLTEL-------HSAEKQEDLVKIFLAVNDILLANQYDNQSKIAYFAKQVEAGHLDATL 187

Query: 227  KGP-IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
            +   ++I G T        L+S +       I+      +     +              
Sbjct: 188  ENVSLVIDGFTRFSAEEEYLVSLLEEKCAQVII----GTYSSQKAYRAA----------- 232

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
             +     Q SL   L  L  K            +    S    ++F           D  
Sbjct: 233  FSTGNVYQASL-DFLRGLAAKFH-------AQPQYVESSQKSHEAFSKLSKLFEAKHDFT 284

Query: 346  ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVK 403
             + +          A+ +  N++EE   +A A+R  L +  +     ++  D +  R   
Sbjct: 285  SSDVTLTADDKKHYAIWDVINQKEEVEHVAKAIRHKLYQGYRYKDILVLLGDVDSYRLQI 344

Query: 404  L-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                 ++ I         +S       + SL            +  L+K  L        
Sbjct: 345  GKIFDKYDIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRTEDVVNLLKTGL-------- 396

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                           GN    D+   +  ++      ++            ++       
Sbjct: 397  --------------YGNFKQEDLDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNR 442

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            + + I+  +  L   +  + S+     ++    + +       +    +      E+  +
Sbjct: 443  MREQIMTPLLALFKAQKQRGSSLLEKLMTFLHAIHLPDNLEGMVATFSENEQEKHEQVWR 502

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
            T + + ++        K +  + + +I   +     +        + +            
Sbjct: 503  TFTGILTQFQTIFGQEKLSLDDCLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNK 562

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE--KYIGQAAH-----DFEMAN--- 692
             +   G+ +  +PK    +  +S   ++ +N  T +  ++   +        F   +   
Sbjct: 563  FVFALGMTQAHFPKIAQNSSLISDEERAQINESTDDNQRFDIVSRENIKKNHFAALSLFN 622

Query: 693  -GTRHLIYTRSLRENNIPTIASRWLQRLL------------------------------- 720
              T  L+ +     N      S +L  L                                
Sbjct: 623  SATEELVLSLPQIANEAEDTESSYLTELASFGVPVLAKGRNRLSTDAEDIGNYKALLSRV 682

Query: 721  ----VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP---------------FP 761
                 L   +  +  K+    +    R L         + P                   
Sbjct: 683  IEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLAAESIELPLIKDNMQTKTVSADVIEAR 742

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                +  + S S +    N+ Y  + + +L L  +      PD  + GT  H +   ++K
Sbjct: 743  FPSDELISLSSSAVTTFYNNQYKYFLQYVLGLQEVETIH--PDARNHGTYLHRVFELVMK 800

Query: 822  KRINKNTPEINHLMKQI--IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
               N +         Q   ++  F+              +   I+ S         + I+
Sbjct: 801  DDSNHSFDSKLDKAIQTTNLEDDFKFVYEEDEESRYSLTVLEDIARSTATILRDD-AQIQ 859

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLS 938
                    ++ I    + + G  DR+D L  G + I DYK+  N    +     + PQL 
Sbjct: 860  VESEEETFELMIA-NSVRIRGIIDRVDRLSDGSLGIVDYKSSRNTFDIQKFYNGLSPQLV 918

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
                AL+       +   +    Y+ +++           +K   +   E + + L    
Sbjct: 919  TYVQALRDKKGLS-ESEHIFGAMYLHMQEPKVDLSSVATTEKILENLAKELTYRGL---- 973

Query: 999  TLLQNGEQPFISHLRLSEKSNIQS 1022
                  E+ ++++ R     ++ S
Sbjct: 974  --FLEDEKAYLANGRYHLNDSLYS 995


>gi|312863156|ref|ZP_07723394.1| ATP-dependent nuclease subunit B [Streptococcus vestibularis F0396]
 gi|311100692|gb|EFQ58897.1| ATP-dependent nuclease subunit B [Streptococcus vestibularis F0396]
          Length = 1106

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 135/943 (14%), Positives = 272/943 (28%), Gaps = 137/943 (14%)

Query: 151  NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
             L D+   ++       DL  L         +   + L        + L+  +  +    
Sbjct: 117  QLVDLYKELQQANMTVLDLQHLDQ-------VEKQEDLVRIISAAQDLLLAGDFDNQSKL 169

Query: 211  QIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
                    + HL K     + +I G T        L++ + +  +  +V          A
Sbjct: 170  SAFFKEITSGHLDKALSNTVLVIDGFTRFSAEEEALVALLNDKCHQIVVGTYASQKAYRA 229

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             +        ++              L  L     +  + V       N  + R   + +
Sbjct: 230  NFVYGNVYQASVDF------------LRTLAQTYKVTPDYVTT-DKEGNLSFARISRLLE 276

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK- 388
            S     T D + T+  ++           + + E  N++EE   +A ++R  L + K+  
Sbjct: 277  SRHDFSTVDEKVTEQDKH----------ALQVWEVVNQKEEVAQVAKSIRQLLADGKRYK 326

Query: 389  --SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+  + +   +V     +F I         +S+      + SL            +
Sbjct: 327  DILVLLGDEESYKLQVGQIFRKFDIPYYFGKEESMSSHPLVQFVDSLERIKRYNYRTEDL 386

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              LVK  L                 EL       N  DI      + D  A  ++     
Sbjct: 387  LNLVKSGLHGGF----------AQEELDLFEYYVNFADIKGRHKFLSDFTANSRDKY--- 433

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                     D +    L   +L+ +  L+  +  K S+     +     + V        
Sbjct: 434  ---------DLDKLNALRSQLLEPLDKLLNSRKQKGSSLLKKLVVFLEAVQVPSKMAALT 484

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
             +  +      E+  K  + L  ++         +  +++ I+   +     +       
Sbjct: 485  AKASEAEKEQNEQVWKVFTQLLEQVETIFGKETLSVDDFLSILRSGMSACDYRTVPATVD 544

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY------ 680
             + +      +  +   +   G+ +  +PK       LS   +S +N  T E        
Sbjct: 545  VVNVKKYDLIQPYSAPYVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVT 604

Query: 681  --IGQAAHDFEMAN---GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL---- 731
                Q  H   M+     +  L+ ++    N      S +L+ LL LG            
Sbjct: 605  QSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDDMSVYLKELLDLGLPLVEKGRNRFE 664

Query: 732  -----------------------------------KKRGQCYLD---------WTRKLDY 747
                                                     YL              +D 
Sbjct: 665  AKGDQIGNYRDLLSTVIALNSSHLDVDLDKDTQTFWSVAVRYLRKRLDKDQVLIPTVIDD 724

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
             T     ++         +P   S S +    N+ Y  + R +L L+ +      PD   
Sbjct: 725  VTTTKVDEQVMQLVFPGEEPLKLSASALTTFYNNQYLYFLRYVLGLEELESIH--PDARH 782

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISH 865
             GT  H +   ++    ++N  +           +  FE          + R +   I+ 
Sbjct: 783  HGTYLHRVFERVMGDSSSENFDDKLEKAIAQTNQEQPFEILYTEDQESRLSRQILEDIAR 842

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925
            S         + ++         + +    I +TG  DR+D L  G + + DYK+G N  
Sbjct: 843  STASVLRDNAA-VKVEREEAKFDLLLA-NSIKITGIIDRVDRLTDGALGVVDYKSGKN-- 898

Query: 926  KETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
                QK    + PQL     AL+     ++D  ++    Y+ ++                
Sbjct: 899  VFDIQKFYNGLSPQLVTYLEALRQT--YKVDADQLFGAMYLHMQDPQLNLAKFG------ 950

Query: 983  ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
             D+L+ ++ K L     L    E   ++      +  +   YD
Sbjct: 951  LDKLAAQAHKELT-YKGLFVASETEHLAGGNYDLQKTV--TYD 990


>gi|149371104|ref|ZP_01890699.1| hypothetical protein SCB49_05445 [unidentified eubacterium SCB49]
 gi|149355890|gb|EDM44448.1| hypothetical protein SCB49_05445 [unidentified eubacterium SCB49]
          Length = 908

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 89/436 (20%), Positives = 162/436 (37%), Gaps = 41/436 (9%)

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +  +LI   T+  K +    L I+G LESR+L+F  +I+  +NEG  P   +   F++  
Sbjct: 475  LYKQLIGTTTLDYKGDAYDGLQIMGVLESRVLDFKNVIMTSVNEGTLPSGKSNASFITYD 534

Query: 668  MQSDLNLKTA-EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGT 725
            ++   NL    EK    A H +      ++     +   + I T   SR++++L V    
Sbjct: 535  LKQQYNLPKYTEKDAIYAYHFYHAIQRAQNCTLLYNTHSDGINTGEKSRFIKQLEVYNLP 594

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
            +        G    D +  +  T K+                   S S +   I +P   
Sbjct: 595  EHNLTKSVIG-HTTDISAPVKKTVKKTDAVMDIIKKIGTRYY---SPSALTAYIRNPIDF 650

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-----KKRINKNTPEINHLMKQIID 840
            Y +RILKL  +   ++       GT+ HN +  L      K+   +N   +  L++  + 
Sbjct: 651  YFQRILKLKELEEVEETVAANTMGTIVHNTLENLYTPLINKRLTAENLKALLPLIENEVK 710

Query: 841  SHFEKE----NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV---NIPAKMAIES 893
              F  E    +     ++I   +  K   +F++ E K  ++  +I V       K  +E 
Sbjct: 711  RQFTDEYKEGDYTKGKNLIIFEVVKKFVQNFIQLELKDVAAGNEIVVQSLEEEFKETLEI 770

Query: 894  I----GIHLTGFADRIDLLKSGFVDITDYKTGDNPK-----------KETAQKLIDPQLS 938
                  + + G  DRID   +G + I DYKTG               KE  +     Q+ 
Sbjct: 771  PSINSSVIIGGKVDRIDRY-NGTLRIIDYKTGKVAASDLYVIDWDVIKEEYKYSKAFQVL 829

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS-----LKN 993
              A   +          +   + +  L   F    I       + + + + +      + 
Sbjct: 830  TYAFICQKK--YGFTTAEAGIISFKNLNAGFLKFGIKPSPNARTVNTIIDAAVLENYKEQ 887

Query: 994  LIEIVTLLQNGEQPFI 1009
            LI +++ + N E PF 
Sbjct: 888  LITVISEIYNPEIPFT 903



 Score =  105 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 66/446 (14%), Positives = 122/446 (27%), Gaps = 95/446 (21%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           +   L +   Y   N   LA +TI +P+KRA   L +   + T   +T  P + ++   +
Sbjct: 1   MQTFLEDTLDYLEDNYQSLADLTIVLPSKRAGGFLMNHLKKRTKH-TTFSPRVINIESFI 59

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
           EE     ++ +  L            L +    + +      K+ + E            
Sbjct: 60  EEVADLKIIDNTQL------------LFKSYAAYLSLKKIKEKESFEEYS---------- 97

Query: 146 IWLAKNLADIIDIIETEEKKWED-LHALKNEKYGMWW----------LLAADF---LKIA 191
              A  L    + I+      +   + L + +    W              +F   L   
Sbjct: 98  -SWATTLLGDFNEIDRYLLDHDSFFNYLTSIQDVNHWYLNSEKTPLIQNYLNFWESLPEF 156

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
            +   + L++ N                 ++    +   I  G      A   +M  + +
Sbjct: 157 YEKLKDDLLKTNTGYQGLVNRIATEEIEHYISANKQTKHIFVGFNALNKAEQVIMQELVS 216

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
             N A +L   D +                        TH      +L            
Sbjct: 217 A-NMAEILWDTDQY-------------------FIKNKTHSVSLFMRL------------ 244

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                                          D       N  K    + L+EA     + 
Sbjct: 245 ----------------------YLKEWPLYKDKPFTTTQNNFKLPKTIHLVEASKNISQV 282

Query: 372 ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
             +   L     E   ++A+I AD  L   +   L      ++++ G+PL+T    S   
Sbjct: 283 KYVGNLLSNMPKEEINQTAIILADEALLIPMLHSLPENVEKVNVTMGVPLTTFPLVSFFD 342

Query: 432 SLLNA---IFKLNDFMAIATLVKHPL 454
            LL           F  I  ++ HP 
Sbjct: 343 ILLQFKFKQGDHIYFRDIINILSHPF 368


>gi|114566669|ref|YP_753823.1| ATP-dependent nuclease subunit B [Syntrophomonas wolfei subsp. wolfei
            str. Goettingen]
 gi|114337604|gb|ABI68452.1| DNA helicase/exodeoxyribonuclease V, subunit B [Syntrophomonas wolfei
            subsp. wolfei str. Goettingen]
          Length = 1124

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 115/956 (12%), Positives = 263/956 (27%), Gaps = 144/956 (15%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
                 ++ ++   +    + EDL     E            + I  +++   + E     
Sbjct: 117  GFINQISQLMADFKQRHIRPEDLQLDAEEMPDQIIKEKLKDISIIYQHFNRYM-EGRYID 175

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
               Y   L+    EH        + I G T   P T +++  +        +   LD   
Sbjct: 176  SEDYMDLLIEKL-EHYTSLKNARVWIDGFTTFAPQTLKIIEKIMVMARDTTICFTLDPDT 234

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                          +        +  Q       + L  +   V        +    + +
Sbjct: 235  WD---------IAELDLFQLPGRSFRQIRAMVRKNALQEEIIQVDPRPAEMLKSPEINHL 285

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
             ++ F  P  +                K   ++ L  A N   E  ++A    +   +  
Sbjct: 286  EAELFAYPGKT--------------FAKKPQNIELFAASNIYSEVEALAAEFLLLARQGY 331

Query: 387  K--KSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
            +    A++  D +     ++     +GI   +     + +     ++ + L  + +   +
Sbjct: 332  RWKDMAVVCHDLDRYGSLIRRTFRDYGIPCFMDRKRDIMSHPIIELILAALEILSRGYRY 391

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
              + T +K   +     E  +           ++GNK   D     +  L  +  ++   
Sbjct: 392  EDVFTYLKTGFSDLTVDEVEILENYAL--EYGIKGNKWKEDFSYGDAESLIELNQKRLLF 449

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
              P     +  +       +   +   +     Y   +  T   L+     +        
Sbjct: 450  TKPLEDLGVMLKGNNTIREMAQALFAFLERENIYSKLEKWTNDLLARGFLEEA------- 502

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                           +    +  +  +++E     K N  E+  I+        +K    
Sbjct: 503  -----------SESSQLWNAMIEILKQMVEIMGEQKVNLKEFKRILEAGFLSLEIKIIPT 551

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---NLKT---A 677
                + +     S+  +   L + G+N+G+ P    +   LS   +  L    L      
Sbjct: 552  TVDQVLLGDIQRSKSHDIKCLYVIGVNDGILPSLGREEGILSETEKEALQEKGLDLGYER 611

Query: 678  EKYIGQAAHDFEMANG--TRHLIYTRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            E    +       A       + ++ +L +        S  + +L ++  +         
Sbjct: 612  EMIWEEERFLIYSALAKPAERIYFSYALADEEGRALRPSLLIDQLRMIFPSLSLKTNLLE 671

Query: 735  GQCYL------------DWTRKLDYTTKQPHYK--------------------------- 755
             + +                 KL         +                           
Sbjct: 672  DRQWQLQMVATPESSFKHLVEKLRLGLDGKELEDFWWDVYRWYFEQESWQCSRKLLLQGL 731

Query: 756  ----RPKPFPPLEAQ-----PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                +P+P  P  ++     P   S S ++Q ++ P+A + R    L        + +  
Sbjct: 732  FHQNQPEPIEPQVSRRLFGTPLRSSVSRLEQFVSCPFAHFVRY--GLQPQERKNYELNSP 789

Query: 807  DRGTLFHNIITEL---IKKRINKNTPEINHLMKQIIDSHFEKENLPPH--------IDII 855
            D G LFH+ +      +++   +           IID+  ++                  
Sbjct: 790  DLGLLFHDSLLHFSHKLRENNRQWLDLSKEECYAIIDTVVDEIVPSFGRGIFNSHPRYQY 849

Query: 856  WRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPA---------KMAIESIG-IHLTGFAD 903
              +   +IS    ++  E   Q   +     +           ++ +E+   + L G  D
Sbjct: 850  LLNRLKRISRRAVWILTEHIQQGDFKPWDYEVAFGRGGMLPAVEIDLENGEKLILEGRID 909

Query: 904  RIDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLE--AAALKAGSFSQIDCRKV 957
            R+DLL+      V I DYK+G            +  QL +   A         +      
Sbjct: 910  RVDLLEFEESCYVRILDYKSGQQDFHLSEVFHGLSLQLMVYLKALMTAWEQMEKKQAV-P 968

Query: 958  ANLFYIR-----LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
            A +FY +     +  + KI  +   +                 +IV  +      +
Sbjct: 969  AGVFYFKIDDPMINSEEKIVEVVEKEIAKKLKLKGLVLADA--KIVRRMDREVNGY 1022


>gi|41409399|ref|NP_962235.1| hypothetical protein MAP3301c [Mycobacterium avium subsp.
            paratuberculosis K-10]
 gi|41398230|gb|AAS05851.1| hypothetical protein MAP_3301c [Mycobacterium avium subsp.
            paratuberculosis K-10]
          Length = 1044

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 113/1022 (11%), Positives = 256/1022 (25%), Gaps = 137/1022 (13%)

Query: 59   ELRSEFIEITG-KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL 117
             L +  +   G   +   P+++++              +    P      RL+  A    
Sbjct: 72   ALTTALLRSAGAGPAVREPLVRTVHGYAYAVLRRAAERAGEAPP------RLVTSAEQDA 125

Query: 118  IWRNKLPDIIKDL--YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
            I R  L   + D      +  +      +    A  L +++          + L  L   
Sbjct: 126  IIRELLAGDLADGPRAATAWPAALRPALSTAGFATELRNLLARCAERGVDPQALERLGRR 185

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
                 W+ A  F +   +              V    A +   A        G   + G+
Sbjct: 186  CRRPEWVAAGQFARQYEQ--------------VMLLRAAVGTAAPEATTPALGAAELVGA 231

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
                 A    +          +++       P A        +    +          + 
Sbjct: 232  ALEAFAVDAELLAAERGRIRVLLVDDAQQLDPQAARLVRVLAAGADLALIAGDPNQAVFG 291

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQK 354
                          +      +  +                   R        +I     
Sbjct: 292  FR------GGDPGSLLDGAAPAVTLTRSHRCAPAVARAVSGVAGRLPGSSAGRRIEGAGP 345

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFG 410
                VA+  A +   EA +IA ALR +   +     + + ++ +      R+   L   G
Sbjct: 346  GEGSVAVRLAASAHAEAAAIADALRRAHLVDGVPWSQMAVIVRSVPRAGARLPRALAAAG 405

Query: 411  INIDISAGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            + +   A   PL+       L ++L A     D      L+  P+ +         R   
Sbjct: 406  VPVTAPAASGPLAEQPAVRALLTVLLATADGLDGQRALALLTGPIGRVDPVSLRQLR--- 462

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
               L      +   D  +L    L   A                         +   +  
Sbjct: 463  -RNLQRANAGRPPGDFAELLVEALTGTAP-------------PPGAPFRALRRVRAVLDA 508

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                    +  +         S   +  ++  +       +   +L        ++  + 
Sbjct: 509  AGRCHRDGQDPRYILWAAWHRSGLQRRWLSVSERGGPAAAQAGRDLDSVTALFDITDDYV 568

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                      A+    ++ +  L         +  +  + +L    +    +D +++ GL
Sbjct: 569  -----SRTSGASLRGLVEHVAAL--QLPGAEPVATAEQVSVLSAHAALGREWDFVVIAGL 621

Query: 650  NEGVWPKNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
             +G+WP    +   L            S        L   E+ +  AA            
Sbjct: 622  QDGLWPNTVPRGGVLGTQRLLDVLDGVSADASVRAPLLAEERRLLVAAMGRARQRLLVTA 681

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL--KKRGQCYLDWTRKLDYTTKQPHYK 755
            + + +   +    + S +   +    G D              L     +          
Sbjct: 682  VDSDTDGSDREAALPSPFCYEIAQWAGEDAEPAALQPVSAPRVLSAAALVGRLRGVVCAP 741

Query: 756  R-----------------------PKPFPPLEAQPRTYS---------------FSEIKQ 777
                                    P   P         S                S ++ 
Sbjct: 742  DGAVDELDRRCAATQLARLAKAGVPGADPASWHGLIPVSTAEPLRGGGDVVTLTPSTMQT 801

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L + P    A R    D           +  G++ H +I      + +++  E+   + +
Sbjct: 802  LTDCPLRWLAERHGGTDPRDLR------SAIGSVVHALI-----AQPHRSPAELVAELDR 850

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESI 894
            +                        +  +F +     + ++ ++ V +     +   +  
Sbjct: 851  VWRHLPFAAQWHSD---NELARHRAMLEAFAQWRANTRGALTEVGVEVEIDGTLSTGDGR 907

Query: 895  GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF-SQID 953
             + L G  DR++   +G + I D KTG  P  +   +    QL+L   A+  G   +   
Sbjct: 908  EVRLRGRVDRLERDAAGRLVIVDVKTGKTPVSKDDAQQHA-QLALYQLAVAHGLLGAAGG 966

Query: 954  CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISH 1011
              +      + + +      +  ++     D L+  +     E +    +      FI+ 
Sbjct: 967  DAEPGGARLVYVGKAAASGVVEREQ-----DPLTAAAADQWREALRRAADATAGPQFIAR 1021

Query: 1012 LR 1013
              
Sbjct: 1022 RN 1023


>gi|323341190|ref|ZP_08081437.1| exonuclease RexB [Lactobacillus ruminis ATCC 25644]
 gi|323091384|gb|EFZ34009.1| exonuclease RexB [Lactobacillus ruminis ATCC 25644]
          Length = 1170

 Score =  178 bits (452), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 114/1034 (11%), Positives = 284/1034 (27%), Gaps = 157/1034 (15%)

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
            P +S+    + + R++   +++L              +     +       LA  +  ++
Sbjct: 92   PRISSAGSNMIIYRILRDLKDEL-------------QVFSGGESQPGFITQLAKQMTELQ 138

Query: 161  TEEKKWEDLHALKNEKYGM------WWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
                  ED+  +  +                  L +    + E       ++     + +
Sbjct: 139  NGCIMPEDVMQMAEKLPKESLGSKALLRSKLHDLALVYTRFIEMTSGRYLAN-----MEI 193

Query: 215  MRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
            +    ++L          +I+G          L+  +  +    +V   L+         
Sbjct: 194  LTELTQYLEKIDLQNSCFLISGFNQMTAREMLLVEKLIENAESVVVDLVLNHPY------ 247

Query: 273  TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             + E   +        + + Q           +  +   +   VS ++            
Sbjct: 248  -VDEPPKSGDLFYRAGNLYYQLYAHAHKSKSPVMLDTYAKKTRVSQDLCNLEDY------ 300

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKS 389
                    N+    +           V +  A    EE    A  +R  +       K  
Sbjct: 301  ------WINSVAGFSAKEKATFENDSVKIYGAKTRTEEIRFAAAKIRQMVAVEGYRYKDF 354

Query: 390  ALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
             ++T   +L + V      +  + I +     +S      +L +L     +   +  +  
Sbjct: 355  LILTRHLDLYKNVLEPIFAKAKVPIFVDLQKKVSDHPLVELLNALFAVKRRHYRYNDMMR 414

Query: 449  LVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            L+K  L      +     R  +  E + L+        +  K  +  R       T    
Sbjct: 415  LLKTELLIPKDLKVETYRRMLDQTENLILKFGYEGSAWLKEKDWIYYRFGESDFGTRT-D 473

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLTVTCLQNV 564
             + R+++E   +   + + +      +   +  + +    ++        K      QN+
Sbjct: 474  AEDRITKEVNVIRRYVKEILPPFFKQIDEAENGRKAAVCLVNFLVDNGVKKRLEDWRQNL 533

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
               +     +   E+       +  + +E    +     ++++++    D    +     
Sbjct: 534  ME-QGLLQESERPEQVWNLFCQMMDEFVENLGDLPFEEEDFLNLLQTGFDAGEYRRVPAS 592

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS---DLNLKTAEKYI 681
               + I  T   +  +   + + G  + V P        LS   +S   +  L +  + +
Sbjct: 593  LDEVSISETGMVQPTDRKVVFMIGSTDLVMPDRIQNKSLLSDGDRSLMLENALLSENQVL 652

Query: 682  GQAAH----------DFEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFD- 729
             + +                + T  LI+T     + +     S +++R+      +  + 
Sbjct: 653  DETSEKSMLSEPFLNYLAFLSPTEKLIFTYPHGNDADGGIKMSPYVERIKQHFLLEELEI 712

Query: 730  ---------------------NLKKRGQCYLDWTRKLDYTTKQPHYKRPK---------- 758
                                            + +++    K    +  +          
Sbjct: 713  SEFDKLSTPKGTIEDLICEIRRHADEKNSVPAFWKQVYAKMKTVDAEMTEKVMSSLRYRN 772

Query: 759  -PFPPLEAQPRTY-------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
             P        R         S S+++    +PY  + R  L L     F+        G+
Sbjct: 773  IPEQLTAQNARKLYGKELNTSISKLETFYKNPYEYFLRYGLGLMERDVFE--MSAASTGS 830

Query: 811  LFHNIITELIKKRINKNT---PEINHLMKQIIDS---------------------HFEKE 846
             FH ++    +     N       +    +I +                        E+ 
Sbjct: 831  YFHAVLDAFFRLLFKNNLTLKNLSSEQFNEIFEETTSLVSKDPQFMILKSSNRMGFIERL 890

Query: 847  NLPPHIDIIWRHLFHKI--SHSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGIHLTG 900
                    +W     +       L  E         + V    K  +    +   +++ G
Sbjct: 891  LNDTLSQTLWAVRNQRNYGHVRTLRTEAL----FGHVGVEEGLKGLLIKTPKGNQVNVRG 946

Query: 901  FADRIDLL---KSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
              DRID        ++ + DYK+G        A   I  QL     AL+  +   +   +
Sbjct: 947  KIDRIDETIGAGDKYLGVIDYKSGARKFNYAQAYYGIALQLLTYLDALEQNAELVLPNEQ 1006

Query: 957  --VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI----EIVTLLQNGEQPFIS 1010
              +A   Y+ L+            ++ +   ++    + L+    ++++ L    +   S
Sbjct: 1007 SKLAGALYLHLQNPRLKPSEVKADEQKTL--IASHGYQGLLVSDPDLLSTLDETVEEKSS 1064

Query: 1011 HLRLSEKSNIQSEY 1024
             L L  K      Y
Sbjct: 1065 SLFLPFKRLSGGTY 1078


>gi|291571373|dbj|BAI93645.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 879

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 116/900 (12%), Positives = 248/900 (27%), Gaps = 181/900 (20%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
                    L   +  + + L +             +  +          P++I G     
Sbjct: 103  HNSRRIRDLAQVTNLYKQELFKQGYIDQDELFWQAINFQ------PKPQPLLIYGYFQPQ 156

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            P     ++ VA   +   VLP             I    +                    
Sbjct: 157  PDQVEFINLVAG-EDSIWVLPTGKAEFFAKNREAIAYLESEGW----------------- 198

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
                                         +     +  +    + L+N   +  +  ++V
Sbjct: 199  -----------------------------QVNYQENNDNFSLGEQLQNCFVDKGEITNNV 229

Query: 360  ALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELT-RFGINIDIS 416
                  N   E   +   ++  + E  + ++  L+T D      + L++   + + + + 
Sbjct: 230  QCHIYSNLEAEVRGVLSQVKQLMIEGISAREIVLVTQDEKTYAPLLLDMAWEYQLPLRLF 289

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
              IPL      S +  L+  I     F + A L+ HPLA      +    A+        
Sbjct: 290  YKIPLRNIRLGSWIALLIEVIENNFPFESTAKLLHHPLA-QYLTYQQWLEARQKRPHN-- 346

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                       L       +                   + +     VDHI Q       
Sbjct: 347  -----------LAEWQELGLNLSLLK-----------FPESDTRQNWVDHIKQVFKFFDI 384

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
             K +   +   ++ ++     V   +      +R+       E    L            
Sbjct: 385  RKNSSQWSREIVAFNELEAAWVELSKPNGDRLNRQEFCQDILEIISKLKVPMQ------- 437

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                                           + +   L  +  ++  + L G  EG+ P 
Sbjct: 438  --------------------------PGKGGIEVHTPLSLQGASYPHVFLIGFQEGILPP 471

Query: 657  NTAKNPFLSRVMQSDLN-----LKTAEKYIGQAAHDFEMANGTRHLIYT--RSLRENNIP 709
                +P L       L+     L+TA     +    F        +  T   + +    P
Sbjct: 472  AIENDPVLDFYESRRLSQLGITLETAIDIAQRNELCFYELLRIPTISLTFSCAEQHYKKP 531

Query: 710  TIASRWLQRLLVLGGTDFF---DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
             I S +  RL +           ++++  + YL    KL          +          
Sbjct: 532  LIPSPYATRLGLEMTPPPLLNLASIEEARRYYLQQPEKLSNDVLVNDIIKNWQVEQRRES 591

Query: 767  PRT------------------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
              +                  +S S++  L   P+  +A  +L L      + +   +  
Sbjct: 592  GESPDEYDGVIGVGVDYENRIFSASQLLALGQCPFKWFATYLLGLKEPSEAEAEITGSLG 651

Query: 809  GTLFHNIITEL---------IKKRINKNTPEINHLMKQIIDSH----FEKENLPPHIDII 855
            G L+H  +  L         +++   ++  E     +  + +     F+K        + 
Sbjct: 652  GRLYHRCLELLLTDIKNQTDLRRLERQDINEALSQAEAALKAEENVNFDKFMGWEARRLE 711

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
              ++      +    E+ ++S+ E I             G+ +T   DRID   +G + +
Sbjct: 712  GLNMLELNLQA----EDFLRSNAEIISCENSFNAEW--YGLKVTARVDRIDRTPTG-LLV 764

Query: 916  TDYK-TGDNP---KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
             DYK TG  P   K ++ Q  I+ Q+ L   A+    F ++    V       LK++  +
Sbjct: 765  LDYKTTGSLPLGIKDDSGQAKINIQMPLYQQAIAQN-FKEVQQVDVK---LYSLKKQRYL 820

Query: 972  DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031
                 D      +  +++  + L +       G   +       ++     ++D + R  
Sbjct: 821  PAKVTDPAI--LEAFADEVKQRLQQ-------GN--YPVAPDQKQQVCQYCQFDSVCRKG 869


>gi|300857960|ref|YP_003782943.1| hypothetical protein cpfrc_00542 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685414|gb|ADK28336.1| hypothetical protein cpfrc_00542 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205689|gb|ADL10031.1| Putative ATP-dependent DNA helicase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330241|gb|ADL20435.1| Putative ATP-dependent DNA helicase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275924|gb|ADO25823.1| Putative ATP-dependent DNA helicase [Corynebacterium
           pseudotuberculosis I19]
          Length = 1062

 Score =  178 bits (451), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 117/954 (12%), Positives = 258/954 (27%), Gaps = 78/954 (8%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK--STILPIIK 79
           +  L+  T+ E  R         +++ +   +K     LR+        +  +    +++
Sbjct: 81  VSTLIMDTVAERLRRG----EDPSNILVIAASKEGATRLRTGIAARLSGESYTAAATMVR 136

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
           S+  +      +       L   ++  ++   +  L+                +      
Sbjct: 137 SVHSLAFALLRSLSGEDLRL---ITGAEQDAVIRELLQGHNE------DSEAAQIWPQET 187

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
                 +  A+ L D +          EDL  L N  +   W  A  FL+     + + +
Sbjct: 188 RDALGFVGFARGLRDFLLRAVERGLSPEDLERLGNTYHRPMWKAAGAFLRE----YEQTM 243

Query: 200 VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
               A S       +      H+       +I+  +    P +A+L+  +  +    I+ 
Sbjct: 244 ALGGAKSLSAS-ELVSTVLEYHIPDQGWRTVIVDDAQHLDPKSAQLIGELLRYAEFGII- 301

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
            G D       +   + +      +          +  +L +      E+  +      +
Sbjct: 302 -GGDPEQSVFHFRGASPEFLTKYPAEHQL---MLKTTRRLPETTARIVENQGQHFEYVAD 357

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
              R+ +I           +R+T ++      +      V +   D    E   +A  + 
Sbjct: 358 KIRRAHLIDGVPWDDIAVIVRSTGLIAPIRRALLAAGVPVQVDPTDIILSEQRIVASMIL 417

Query: 380 MSLDENKK------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
                + +      +  L+             L R    +++S G              L
Sbjct: 418 AVRAIHGELNNRELEDLLLGPIGGADSVTLRRLYRGLRKVEMSRGGS-------RRAIEL 470

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN------KNSYDIMD 487
           L  +           L+          E  +      + L   +           +    
Sbjct: 471 LKILISPRPSEEQNDLIGEAEEVLSERELQILERTRRVLLRGAQPGSVEEVLWAIWHETG 530

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC-ITPLVTYKTNKNSTCG 546
           L + +                    +    + A   V+      I   + +   +    G
Sbjct: 531 LANHLQAVSLRGGAAGSQADRDLDAAMALFDAAGDWVERRPTAGIVSFMRHIAEQELPTG 590

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                      V  L        +    +             S      +       E  
Sbjct: 591 VRDRRQIRTQAVQLLTAHAALGQQWHTVIVAGV------QEGSWPSLGETGTLFGQEELT 644

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
           D+I   I+  T+  + +            ++      L +  + +         + F+  
Sbjct: 645 DLIDSGIEPNTIVMRSKDRLDEERRLFHVAKSRATHRLYITAVEDPASNDVAEPSRFIEE 704

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
           +  S    ++ E     A  D  +    +       +R  ++P + +   + +       
Sbjct: 705 LDPSFFQQQSQENEASYA--DLSVPLAPKDTGLEDYIRLLSVPAMVAELRREVRNSDSPQ 762

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK----PFPPLEAQPRTYSFSEIKQLINDP 782
                ++R Q      R         H +       P      Q R+ S S I+Q +  P
Sbjct: 763 -----RRRDQAARQLARLASAGVPGAHPEEWWGEGGPSTDQPLQQRSISPSLIEQGLTCP 817

Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                    +LD +   ++ P +  +G+L H     + +   ++   E+        ++ 
Sbjct: 818 LRA------RLDAVIEGEETPFQMLKGSLAHAYAEAIARGVESETAKEL------TTEAF 865

Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
               N P       +  + ++     E      +  E + V       I   GI + G  
Sbjct: 866 LRLLNAPAWQQETEKAAWIRMIERLEEWITVSAARYELVGVETSVNTKIA-EGITIRGRI 924

Query: 903 DRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
           DRI+  + G   I DYKTG      +        QL     AL  G  S     
Sbjct: 925 DRIERTQDGAYRIIDYKTGTRGLSAKEVADH--KQLMAYQLALSKGKLSDTGDV 976


>gi|300310195|ref|YP_003774287.1| inactivated superfamily I helicase [Herbaspirillum seropedicae SmR1]
 gi|300072980|gb|ADJ62379.1| inactivated superfamily I helicase [Herbaspirillum seropedicae SmR1]
          Length = 924

 Score =  178 bits (451), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 153/1036 (14%), Positives = 306/1036 (29%), Gaps = 133/1036 (12%)

Query: 11   IAPSSPFFREMIPALLN--GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT 68
            I PS  F+++ +  LL+    L +  +      L  + V + VP     Q  ++      
Sbjct: 8    IPPSPDFWQQAVRQLLHPGQPLGQALQAQAGAALDFSGVQLMVPAFSHAQNFKAALSREL 67

Query: 69   GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK 128
             ++  I P I +L  ++  +   +           S  +RL++L   +            
Sbjct: 68   -RRPYIAPRINTLSGLLAMQPPGEDAPP-------SESERLMQLYAQLREHGWLKKMFSA 119

Query: 129  DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188
                +           +  L+  L   I     E+           +        A   L
Sbjct: 120  RRNADLLPLAHTLLDLSDELSLALLPEIRASAGEDAIAGRWTQALAQLLAPLAPSAHAML 179

Query: 189  -KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
             + A+  W    ++L+A   +  +   M   A         P+I    T   P  A  ++
Sbjct: 180  SEEAALVWQIWKIQLDARDRIVQRFDAMLDLAARASL----PLIWVSPTEPEPLDAAFLA 235

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
              A H    IV            W+                                   
Sbjct: 236  AYAQHQPVRIVTLD---------WSRAAMAPLY--------------------------P 260

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
              +   G +  E  G +    +                   +              A + 
Sbjct: 261  LYLSAWGELVREEEGPAPAYEEFAASAPPEASAAAPSALPLLCP------------ASDL 308

Query: 368  REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
               A+  A  +   L + K + A++  DR  ARR++  L R  +++    G  LSTT  +
Sbjct: 309  ENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADETGWKLSTTRAA 368

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            + L +  + +    +  A+  L+K P      P         A  ++ +       +I  
Sbjct: 369  AALAAWNDLVSARGETNALLDLLKSPFVFPADP-------GRADRVMRIEARLRRANIAG 421

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                +    A  ++                             +  ++T         G 
Sbjct: 422  DWQALQTAFADARDPDD--------------------------LQCILTLARQAARFGGR 455

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW-I 606
             ++S W +      + + +D       L  +  G+    +  +I      ++        
Sbjct: 456  KTLSQWCETQRRLCEALGMD-----AALREDGAGQQCLLMLDEIAAEQGALQDQFSFAEW 510

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
              +  L    T      K   + +L    +RL  FD +++ G +    P    +  F S 
Sbjct: 511  RALLNLRLDATSYMPPIKDRRVVMLPLNGARLRRFDAVLVIGADAAHLPSPPQETLFFSN 570

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             ++ +LNL T      Q   D          ++      ++  P   S W++RL +    
Sbjct: 571  AVRRELNLATRATRQRQQLRDLVELLCINPEVVLCWQTHQDGEPNPVSPWIERLELKLAQ 630

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                 L++         ++L           P P  P +  P T S S     +  PY  
Sbjct: 631  QGAAPLQR--LELPPPVQQLRA----LPSSMPAPSAP-DLLPPTLSASGFGSFLACPYQF 683

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN--TPEINHLMKQIIDSHF 843
            +A+R+L++  +    + P++ D G+  H I+ +      + +   P    L+ Q  +  F
Sbjct: 684  FAQRMLRVAVMDELSEMPEKRDYGSWLHEILYKYHAHLRDNDTPLPARAALLAQFSEEVF 743

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV---NIPAKMAIESIGIHLTG 900
            ++E       + +   + K+  ++L    + ++   +      +    +     GI L G
Sbjct: 744  QREMQRHPAALAFHARWQKVMPAYLLWANEREAEGWQFAFGEESQSQTLQWSDGGIELYG 803

Query: 901  FADRIDLLKSGFVDITDYKTGDNPKKET-AQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
              DR+D  + G   + DYKT          ++  D QL+                  + +
Sbjct: 804  RLDRVDRNEQGQRALLDYKTRSAASLRQKVKEDDDHQLAFYGLLA---------GGVIEH 854

Query: 960  LFYIR--LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEK 1017
              Y+   L    K               L ++    +  +                  E 
Sbjct: 855  AHYVALELGPDKKTGDAAAPDFARRQKMLQQQITTTMQAVAHGAALPANG-------IES 907

Query: 1018 SNIQSEYDHLARVAEW 1033
                 E   L R   W
Sbjct: 908  VCQYCEMRGLCRKGAW 923


>gi|167038395|ref|YP_001665973.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacter
            pseudethanolicus ATCC 33223]
 gi|167038871|ref|YP_001661856.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacter sp.
            X514]
 gi|300913541|ref|ZP_07130858.1| ATP-dependent nuclease subunit B [Thermoanaerobacter sp. X561]
 gi|307723444|ref|YP_003903195.1| ATP-dependent nuclease subunit B [Thermoanaerobacter sp. X513]
 gi|320116799|ref|YP_004186958.1| ATP-dependent nuclease subunit B [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
 gi|251764631|sp|B0KDB8|ADDB_THEP3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|251764632|sp|B0K212|ADDB_THEPX RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|166853111|gb|ABY91520.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacter sp.
            X514]
 gi|166857229|gb|ABY95637.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacter
            pseudethanolicus ATCC 33223]
 gi|300890226|gb|EFK85371.1| ATP-dependent nuclease subunit B [Thermoanaerobacter sp. X561]
 gi|307580505|gb|ADN53904.1| ATP-dependent nuclease subunit B [Thermoanaerobacter sp. X513]
 gi|319929890|gb|ADV80575.1| ATP-dependent nuclease subunit B [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
          Length = 1149

 Score =  178 bits (451), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 122/940 (12%), Positives = 273/940 (29%), Gaps = 129/940 (13%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
               K ++++I   +  E   E L                  L +    + E L +     
Sbjct: 117  GFIKKISEVITEFKRFEVTPEKLMDTAESIQKEGLREKLRELSLIYGKFDELLHQKYID- 175

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 + L+  + E+  +       I G TG  P   +++  +      A V   L    
Sbjct: 176  -EEDALTLLAEKLEYSEQFKGAEFWIDGFTGFTPKQYKVLEKL--LKKAARVSVTLTMDT 232

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                 +      T   + +          L K+    +I  E    L     + + ++  
Sbjct: 233  SKDSIDNTDLFYTTKKTEDK---------LLKICYENNISYEKPVDLNEGVPKRFEKNEE 283

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
            ++       +   +             K   +++L +A N   E    A  +   + +  
Sbjct: 284  MAFLEKHLFSYPYKI----------YSKDTKNISLFKAVNVYSEVEETAREIIRLVRDEN 333

Query: 385  -NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                   +   D +   + +K   + +GI   I   + +        +TSL     K   
Sbjct: 334  LRYSDIVVTARDLKRYHKLIKTIFSHYGIPHFIDLKLDIKNNPIIVYITSLFEIYLKNWS 393

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            + ++   +K         +            +  +G K   +        LD++   ++ 
Sbjct: 394  YESVFRHLKTGFTNLNKEDISFLENYVLANGI--KGGKWKEEWKYSFRNRLDKLFDDQDE 451

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                   + +     E               +        +      I    +  +   +
Sbjct: 452  KEALEKVNTIKNGISEPLNKFYKDFSNA-NTVREACEILYNFLVERDIPQRIENLIREFK 510

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                 E     +    +    +  +  +++E     K N   +  I+    +   +    
Sbjct: 511  ENKEFEIANQYS----QIWDIVVDVLDQMVEVMGEEKINIDLFSKILDIGFEAYQIGSIP 566

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLK 675
                 + +      +  N   L + G N+G++P ++ +   L+   +        +L+  
Sbjct: 567  PALDEVLVTSVDRMKSHNAKALFVIGANDGIFPASSFEEGILTDEDRQILTSYEVELDRD 626

Query: 676  TAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIA-----SRW------LQRLLVLG 723
            T  K   +    +     T   L  +  + ++   ++      SR+      + +   + 
Sbjct: 627  TKAKVFEEQFLVYTALTSTSKFLRISYPIADHEGRSLRPSIIISRFKRIFPQITQFSNVI 686

Query: 724  GTDFFDNLKKRGQC------------------------YLD----------WTRKLDYTT 749
              D  +    R                           +LD          W ++++   
Sbjct: 687  EMDTDEENLHRVSSPDPTFNEMIKSFKEWDIKDKINSLWLDVYNWYSNKEVWRKRIEKVL 746

Query: 750  K------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
            +      Q           L      +S S +++    P+A + +  LK           
Sbjct: 747  EGFNYSNQVRVIPSAKIKRLYKDEINFSVSRLEKYAACPFAYFVQYGLKAKERK--IYSF 804

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE-----------KENLPPHI 852
            D  D G   HN++ E+ K    ++      L ++  D               +  L    
Sbjct: 805  DPPDLGIFMHNVLNEVSKALEKEDKTW-EDLDREYCDEVVNIVVDNMLKGVSEHILKSSP 863

Query: 853  DIIWRH-LFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAI---ESIGIHLT 899
               +      ++  +  ++  E   +SS       +          + I       I+L 
Sbjct: 864  RYEYLSKRLTRVLSNAVWVISEHIKRSSFIPSGHEVAFGENQMYPPIKIILSNGEEINLI 923

Query: 900  GFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            G  DR+D+ + G    + I DYK+G    K E     ++ QL +   A+   +  +    
Sbjct: 924  GRIDRVDVFEKGEESYIRIIDYKSGNKELKLEDVFYGLELQLLIYLDAILESADKENTDI 983

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            K A +FY R+      D I    K  + +EL ++ LK L 
Sbjct: 984  KPAGIFYFRID-----DPIVKADKDITDEELQKEILKKLR 1018


>gi|256751133|ref|ZP_05492015.1| ATP-dependent nuclease subunit B [Thermoanaerobacter ethanolicus
            CCSD1]
 gi|256750039|gb|EEU63061.1| ATP-dependent nuclease subunit B [Thermoanaerobacter ethanolicus
            CCSD1]
          Length = 1149

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 122/940 (12%), Positives = 273/940 (29%), Gaps = 129/940 (13%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
               K ++++I   +  E   E L                  L +    + E L +     
Sbjct: 117  GFIKKISEVITEFKRFEVTPEKLMDTAESIQKEGLREKLRELSLIYGKFDELLHQKYID- 175

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 + L+  + E+  +       I G TG  P   +++  +      A V   L    
Sbjct: 176  -EEDALTLLAEKLEYSEQFKGAEFWIDGFTGFTPKQYKVLEKL--LKKAARVSVTLTMDT 232

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                 +      T   + +          L K+    +I  E    L     + + ++  
Sbjct: 233  SKDSIDNTDLFYTTKKTEDK---------LLKICYENNISYEKPVDLNEGVPKRFEKNEE 283

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
            ++       +   +             K   +++L +A N   E    A  +   + +  
Sbjct: 284  MAFLEKHLFSYPYKI----------YSKDTKNISLFKAVNVYSEVEETAREIIRLVRDEN 333

Query: 385  -NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                   +   D +   + +K   + +GI   I   + +        +TSL     K   
Sbjct: 334  LRYSDIVVTARDLKRYHKLIKTIFSHYGIPHFIDLKLDIKNNPIIVYITSLFEIYLKNWS 393

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            + ++   +K         +            +  +G K   +        LD++   ++ 
Sbjct: 394  YESVFRHLKTGFTNLDKEDISFLENYVLANGI--KGGKWKEEWKYSFRNRLDKLFDDQDE 451

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                   + +     E               +        +      I    +  +   +
Sbjct: 452  KEALEKVNTIKNGISEPLNKFYKDFSNA-NTVREACEILYNFLVERDIPQRIENLIREFK 510

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                 E     +    +    +  +  +++E     K N   +  I+    +   +    
Sbjct: 511  ENKEFEIANQYS----QIWDIVVDVLDQMVEVMGEEKINIDLFSKILDIGFEAYQIGSIP 566

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLK 675
                 + +      +  N   L + G N+G++P ++ +   L+   +        +L+  
Sbjct: 567  PALDEVLVTSVDRMKSHNAKALFVIGANDGIFPASSFEEGILTDEDRQILTSYEVELDRD 626

Query: 676  TAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIA-----SRW------LQRLLVLG 723
            T  K   +    +     T   L  +  + ++   ++      SR+      + +   + 
Sbjct: 627  TKAKVFEEQFLVYTALTSTSKFLRISYPIADHEGRSLRPSIIISRFKRIFPQITQFSNVI 686

Query: 724  GTDFFDNLKKRGQC------------------------YLD----------WTRKLDYTT 749
              D  +    R                           +LD          W ++++   
Sbjct: 687  EMDTDEENLHRVSSPDPTFNEMIKSFKEWDIKDKINSLWLDVYNWYSNKEVWRKRIEKVL 746

Query: 750  K------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
            +      Q           L      +S S +++    P+A + +  LK           
Sbjct: 747  EGFNYSNQVRVIPSAKIKRLYKDEINFSVSRLEKYAACPFAYFVQYGLKAKERK--IYSF 804

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE-----------KENLPPHI 852
            D  D G   HN++ E+ K    ++      L ++  D               +  L    
Sbjct: 805  DPPDLGIFMHNVLNEVSKALEKEDKTW-EDLDREYCDEVVNIVVDNMLKGVSEHILKSSP 863

Query: 853  DIIWRH-LFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAI---ESIGIHLT 899
               +      ++  +  ++  E   +SS       +          + I       I+L 
Sbjct: 864  RYEYLSKRLTRVLSNAVWVISEHIKRSSFIPSGHEVAFGENQMYPPIKIILSNGEEINLI 923

Query: 900  GFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            G  DR+D+ + G    + I DYK+G    K E     ++ QL +   A+   +  +    
Sbjct: 924  GRIDRVDVFEKGEESYIRIIDYKSGNKELKLEDVFYGLELQLLIYLDAILESADKENTDI 983

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            K A +FY R+      D I    K  + +EL ++ LK L 
Sbjct: 984  KPAGIFYFRID-----DPIVKADKDITDEELQKEILKKLR 1018


>gi|257459107|ref|ZP_05624226.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
 gi|257443492|gb|EEV18616.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
          Length = 970

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 132/1024 (12%), Positives = 265/1024 (25%), Gaps = 132/1024 (12%)

Query: 56   AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115
            + + LR+     +G    + P I +L +  E+      L+          I R L + + 
Sbjct: 14   SSRALRAALQNESGG--VLAPRI-TLAEFYEKALFVPDLV------ACGEIDRALFMKQA 64

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
            +   +               L  P      +   + L      + TE      + AL   
Sbjct: 65   VSESKR----------AGERLKFPNELYEFMRNREYLFGFFKELATERVS---IDALDLS 111

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
                W+    + L+  +  +   L E      +    AL      +L    +  I I G 
Sbjct: 112  DTYAWYAEHFEILRKLAGAYARILREHGFYDEITL-PALYELNESYLRGFERIEINIDG- 169

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
                     +    A      +VL      + +     + E           Y  +    
Sbjct: 170  -NPSAFEFEVFKRAAEL--SEVVLSFRATTLNSKPVRAVEELCGISLELGFAYRVNLSTG 226

Query: 296  LAKLLDFL---------DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                 + L           +   ++               I+   +     D      L 
Sbjct: 227  EISSRELLSVGGAVVCRGFELRSLQASYVFEKISSFVRAGIAPESIAVILPDESFAGTLR 286

Query: 347  NKIPNIQKCFSDVALIEADNEREE--------AISIAIALRMSLDENK--KKSALITAD- 395
                 I +      ++      +            I+  L+ +          A  + D 
Sbjct: 287  LYDERIARARGSHRMLNFAMGEKLKDNLFYVTLEKISQCLKEARTPKFGVDYRAFKSPDG 346

Query: 396  ---RNLARRVKLELTRFGINIDISAGIPLSTTLHS----------SILTSLLNAIFKLND 442
                     V+  L       D SA    +    +          + L  +    F+  +
Sbjct: 347  GFLDAEDSAVQQNLALGNFASDNSASQNFAQQNSAFDCEIFSNSKTDLNFMSAREFENTE 406

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY-----------DIMDLKSL 491
               I   +    A     + +        E +     ++                 L+  
Sbjct: 407  NFEILREISAERANSAEEQSFSLDLAEFQEPLECAQQRDYSVSAKRQEPSRKQQGSLRYS 466

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            +       +          +     +       D   Q   P        +         
Sbjct: 467  MQLEHIELEEEDGYSKSPKQRDRFRRSKIREGADEYPQRSNPQELDLFFASVGVDEALFG 526

Query: 552  DWT---------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
            ++          +     +  +          L  +E+ K    L   ++        + 
Sbjct: 527  EFACDFAKQVSFEHFEALITKLACLPKISDALL--QEKLKEPLYLIKILLRKFKDENLSL 584

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
               ID+   L++   +K    +   + ++G LESR L FD +I+   N+ + PK ++   
Sbjct: 585  GNLIDLF--LLEISRIKLDDVRGGKVTVMGLLESRGLQFDGVIIPDFNDDLVPKRSSGEM 642

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLV 721
            FL+  +++   L +           ++      +               + SR+L+    
Sbjct: 643  FLNSALRARAGLISHADRENLQRFYYDGLLRGAKKSAICYLQSVEK---LPSRFLKSF-- 697

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                +   + +   + YL          K     +  P    +      SFS +   +  
Sbjct: 698  ----EVQQDAEFSQEDYLRLFG--REEFKPALCGQEDPVARHDFFAEELSFSRLDTFLEC 751

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
                Y R +  L      K   D    G + H     L ++             + I   
Sbjct: 752  KRKYYYRYVFGLK--EGLKFGEDNALLGKILHTSFQRLYER---AGMKFSMEKFRSIYSQ 806

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
               +  +      +      K++     HE+            +  K  ++  G+ L+G 
Sbjct: 807  LAREAGIARFDVELELKAVEKLARLLEGHEQ----IWSFSGSEVSLKGELD--GVRLSGR 860

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
             DRID  K+G   I DYK G    K+  +K    QL+   A L                 
Sbjct: 861  IDRIDEDKAGRKFIIDYKRGSA--KKHMEK---FQLTFYRALLAQEC----------ECA 905

Query: 962  YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
            Y+ LK                     E   + L  I     + E  F      + +S   
Sbjct: 906  YLSLKDCAFAAPGDKTPS-------LENLRETLSSIGKEFAS-EVAFT--RTEAVQSCEY 955

Query: 1022 SEYD 1025
             +Y 
Sbjct: 956  CDYK 959


>gi|70726985|ref|YP_253899.1| hypothetical protein SH1984 [Staphylococcus haemolyticus JCSC1435]
 gi|123659796|sp|Q4L4Y2|ADDB_STAHJ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|68447709|dbj|BAE05293.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 1162

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 112/956 (11%), Positives = 261/956 (27%), Gaps = 138/956 (14%)

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
               ++ L++ I   +      E LH  L++           + + +  +Y+ ER+     
Sbjct: 117  YGFSEKLSEQIQDFKKYSVTPEHLHTFLQDNDLKTRTRHKLEDISLIYQYFEERINGE-F 175

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
             +        +   ++      +  + I G         +++  +        VL   D 
Sbjct: 176  ITSEDSLNHFIDILSQS-EWIKRAEVYIDGFHNFSTLEYQIIKALVQSAKKVTVLLTTD- 233

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                       E   ++    +   TH    L ++   L+I                 + 
Sbjct: 234  ---------GNEDPFSLFRKPSEVLTH----LKEIAKDLNI---------------ELQQ 265

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
                + +   +   ++     +    N       + ++E+ + REE   +A  +     +
Sbjct: 266  QFFKQQYRFNNKDLIQLEQQFDALQINPIAYDGSINILESSSIREEVNEVARQIIKDTRD 325

Query: 385  ---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                 +  A++  D   A      L ++ I  +I     ++      ++ SLL  I    
Sbjct: 326  KQYRYQDIAILYRDEAYAYLFDSVLPQYDIPFNIDTKRSMTHHPIMEMVRSLLEVIQTNW 385

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
            +   +  L+K  +    F +       + LE   +         +D K   +D       
Sbjct: 386  NISPMMRLIKTNILTNHFKDSAYL--IDLLENFVVERGVYGKRWLDEKLFSIDNFTKMGR 443

Query: 502  NTHVPHWQSRLSEEDKELA-VLLVDHI---LQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              H    + R   E        ++D I    + +      +    +    +   D  K  
Sbjct: 444  KEHKLTTEEREDFEQVVHLKNDIIDKILTFEKAMNEAENVRGFATAFYETMEAFDLPKYL 503

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
            +T    + +D  R       ++    L  +   ++      +     ++++    ++   
Sbjct: 504  MTHRDQLDVDG-RHEEAEEIDQIWNGLIQILDDLVTVFDNEEMTLKRFLEVFDIGLEQLE 562

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL--- 674
                 +    + I     +++ N   + + G+N+G  P+  + +  ++   +        
Sbjct: 563  FVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGMNDGAMPQPVSSSSLITDEEKKVFEQQAQ 622

Query: 675  ----KTAEKYIGQAAH--DFEMANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDF 727
                 T++      A      M  G+  + ++ SL          S ++ ++  L     
Sbjct: 623  VELSPTSDILQMDEAFVCYIAMTRGSEQVTFSYSLMGAQGEDKEKSPFIDQIQGLFNGLE 682

Query: 728  FDNLKKRGQCYL-------------------DWTRKLDYTTKQPHYKRPKPFPPL----- 763
              N+  +                         W              +            
Sbjct: 683  VMNIHYQHNAQPLSLMEHPHQTKVVLFESLKAWLEAEMVADVWVDAYQVMRDNDKLNNGL 742

Query: 764  ------------------------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                                           S S  +   + P+  YA   L+L+     
Sbjct: 743  EYLLTALTYDNETVKLDEPLAASLYGSTINASVSRFEGYNDCPFKHYANHGLRLNER--T 800

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI-----DI 854
            K   +  D G +FH  +  +  K         N  +  +     E             + 
Sbjct: 801  KYKLENFDLGNIFHTALKYISDKVDGDFKNLDNKKIHALTVEALENVLPQVQFNLMDSNA 860

Query: 855  IWR---HLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK--------------MAIESIG 895
             +R        I  S L+       +   +        +              +  + I 
Sbjct: 861  YYRYVSKRIGVIVESTLKALRYQNKNTKFKPQRFEAGFRKTPNNSEELIAQPLITKQGIP 920

Query: 896  IHLTGFADRIDLL--KSGFVD-ITDYKTGDNPKK---ETAQKLIDPQLSLEAAALKAGS- 948
            +++ G  DRID           I DYK+ +   K   +        Q+          + 
Sbjct: 921  VNIRGQIDRIDAYTKDDKSYINIIDYKSSNPSAKLDLKKVYYGKQMQMMTYMDIALQNAQ 980

Query: 949  -FSQIDCRKVANLFYIRLKQKFK--IDCITNDKKKYSADELSEKSLKN--LIEIVT 999
                 +  K   L Y  +  +     D    +    + D+L +  LK   L  +V 
Sbjct: 981  RLGLSNEIKPGGLLYFHVHDERLSFKDWGELEDDALTQDKLEQAFLKEYKLRGLVN 1036


>gi|325953681|ref|YP_004237341.1| hypothetical protein Weevi_0035 [Weeksella virosa DSM 16922]
 gi|323436299|gb|ADX66763.1| hypothetical protein Weevi_0035 [Weeksella virosa DSM 16922]
          Length = 896

 Score =  178 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 134/1032 (12%), Positives = 283/1032 (27%), Gaps = 185/1032 (17%)

Query: 17   FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
            F  +++  LL             +   L   T+ +P KR +   +  F + T +   +LP
Sbjct: 4    FIDKVVDELL------------KDTEKLLQTTLVLPGKRPMLFFKKAFQQKTSQ--VVLP 49

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
             + S+ + V E     L         +S +                L      L      
Sbjct: 50   KMISIEEFVSEMANVQL---------ISGLSLWFFAYNSYEKVFPDLETFDDFLKW---- 96

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA--LKNEKYGMWW--LLAADF---LK 189
              P +  +   L  +L D  D         E +    L+  +           +F   +K
Sbjct: 97   -APTTLKDFDDLDASLVDT-DHFFEYMVSIERIKNWGLEIGEADKHTLIQRHLEFNERVK 154

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            +    + + L+    +              + +    +   + AG      A   ++  +
Sbjct: 155  LFYNQFRKDLLTEKKAYYGLANRLAAEQINQAINSPIE--YVFAGFNALTKAEEAILFGL 212

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
              +   A +    D +                          PQ      L     K + 
Sbjct: 213  -ENEQKAKIFWDADEYYLQ-----------------------PQQESGAFLRRHKKKTKK 248

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                                                     N       + +        
Sbjct: 249  QWSWTF-----------------------------------NDFASPKQIQVTGISKNVA 273

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
            +A  +   LR   +E  K +ALI AD  L   +   +     +I+IS GIPL     +  
Sbjct: 274  QAKYVNELLRHKTEEELKNTALILADEMLLPALLNAMPNNVKHINISMGIPLKNIPLAHF 333

Query: 430  LTSLLNAIFKL--------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              S+L                F  I  ++++P  K      +  +    L  +    NK 
Sbjct: 334  FKSILELHMNREKLGNSTAFYFKNILDILENPSLKI-----FHCKNDEQLIAIIHSQNKV 388

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
               +  L+  ++                             L+  I + I  L       
Sbjct: 389  FSSVKFLQDFLI-------------DSIFSPLFSRPNNLNDLLSIIEKFIADLFVNPKID 435

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
            N                    ++  +      +  F         L      +      +
Sbjct: 436  NDLMREYLF-----YFQQIFTSLRTEIATLKASTSFRTLYLLYQKLLQSETLSFIGEPLD 490

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
             ++ + ++   +           +  +  LG   +  + +D     GLN           
Sbjct: 491  GLQVMGLLETRLINFDHLIMTSVNDGILPLGRQNNTFIPYDIRKEKGLNTFTENDAIYAY 550

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL-RENNIPTIASRWLQRLL 720
             F                           A   + + +  +   +       SR+L+++ 
Sbjct: 551  HF---------------------YRLLSRA---KTVHFLYNTDSDAMGSGEKSRFLEQIA 586

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
                 +   N  K     +   + +      P   +        A+    S + +   I 
Sbjct: 587  YESSHEVVINYAKPHFEIIPKNKLV-----IPKTPKTMEKLIDWAENIGISPTLLSTYIR 641

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE---------I 831
            +P   Y R IL  D     ++       G + H  +  L +  +N    E         +
Sbjct: 642  NPIEFYERVILSNDETEEAEETISAKTLGKIVHGTLETLYQDYLNIALHEKDFEEIKNKV 701

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE--KIQSSIEKIFVNIP--A 887
            + +++  +   +++  L    +++ +++  KI    L+ ++    ++ +  +F+      
Sbjct: 702  DEVLEANLKKEYKEGELDRGENLLIKNVARKIVEGVLQRDKKIAQENELVILFLEKKYNF 761

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP----KKETAQKLID-------PQ 936
             M I    + + GF DRID + +G   I DYKTG         +  +++ +        Q
Sbjct: 762  LMDIGDRKVKVKGFIDRIDSV-NGTKRIIDYKTGKIDNLNLASDKIEEVFEMDNKAKYLQ 820

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L   A         Q +  +++      L ++                ++ E SL     
Sbjct: 821  LITYAHLYYNEIQQQEEEIQLSIYPIKFLNKEPIYLHYNKSTMITY--KIVEDSLTYFQN 878

Query: 997  IVTLLQNGEQPF 1008
            ++  + N E PF
Sbjct: 879  LIREILNPEIPF 890


>gi|269796046|ref|YP_003315501.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098231|gb|ACZ22667.1| DNA/RNA helicase, superfamily I [Sanguibacter keddieii DSM 10542]
          Length = 1124

 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 116/1031 (11%), Positives = 262/1031 (25%), Gaps = 116/1031 (11%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-VS 104
            SV +   T+R    LR       G  +    ++++         TA    +    P  V+
Sbjct: 72   SVLVLGATRRGAGHLRDTLAARLGL-TVRGAVVRTAPSAAFTVLTARAQAAGEPAPTLVT 130

Query: 105  NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
              ++ L L  L+          +       P ++P          + L D++        
Sbjct: 131  GPEQDLVLGELLAGHAAGEGVDV-----GWPATVPAETLELRGFREELRDLLMRAAERGL 185

Query: 165  KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA---SSPVGYQIALMRAEAEH 221
              EDL  L        W+ A    +        R +  +A     P G      R     
Sbjct: 186  GPEDLVTLGRRHSRPEWVAAGRLYEEYLAVMALRGLTPDAGERYDPAGIVDEAARTLETW 245

Query: 222  LM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                +     +++     +  ATARL   +A   +GA ++   D       +   T    
Sbjct: 246  EADDRPRWDLVVVDDYQEATAATARLCHVLAG--DGARLVLLADPDTSAQAFRGATPALV 303

Query: 280  NITSSNTTYSTHPQ-------YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS-F 331
               S+ +  ++            L   +  L         L +V   +      +     
Sbjct: 304  GRASAGSPPTSRSLDLDAGSTGELGAQVHTLGTVWRHGAVLRDVVRSVTQEIGSVGAVEH 363

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KK 388
                   +                   V      +   E   +A  LR           +
Sbjct: 364  RRAPARSLDAAAAAAEASDGTDSTDGTVETAVLPSPALEEAHVAKTLRAEHLVRGTAWSQ 423

Query: 389  SALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSS-ILTSLLNAIFKLNDFMAI 446
             A++    +   R++  L   G+ + +    +PL        +L +L  +          
Sbjct: 424  MAVVARSGSELVRLRRALGGAGVPVAVVGTDVPLRDEPAVRPLLRALRASATGDLAPEVA 483

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              L+  PL           R     E +A  G +               +     +    
Sbjct: 484  VELLTSPLGGIDAVGLRRLRRALRGEELAGGGGR----------TSDALLVEALGDPARV 533

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                            +++     +         +       + +D  +   +   N   
Sbjct: 534  VTLPSDVVRAPRRVARVLEAGRTALEAPGA--NAQTVLWALWAAADVAETWRSIAVNGGP 591

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
               R   +L         +  F + +   + +         + ++ +  +T+      S 
Sbjct: 592  GAARADRDLDAVMAVFRAAETFVERVPQATAVAF----ADHVESQDLPADTLAKGAAASD 647

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-----------NLK 675
            T+ +L    +    ++ +++ G+ +G WP    ++  L      D+              
Sbjct: 648  TVQLLTPAGAAGGEWEVVVVAGVQDGTWPDLRLRDSMLGSQALVDVLSGRSQDATSTGRD 707

Query: 676  TAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
                 +      F +A       +   ++R+ +        L      G      ++   
Sbjct: 708  ARRAVLADELRAFAVAVSRASRRLVVTAVRDVDSEPSVFVDLVSPDDDGSDTEPPDVFAA 767

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------- 779
                      L                   A     + S   +                 
Sbjct: 768  PLDLRGVVSTLRTELAAALSMDGAAGSAGSAGSAGSAGSAGSEGAARTAAPASTARAASV 827

Query: 780  --------------NDPYAVYARRILKLDFIPHFKKDP---------------------- 803
                           DP + Y    L          +                       
Sbjct: 828  AGLLARLAGAGVGEADPTSWYGSAELSTPAALRAPDETVPVSPSKVEQVHRCALRWALES 887

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI-IWRHLFHK 862
                 G+     +  L+     +     +  +   +D  + +  +P        R     
Sbjct: 888  AGGTAGSALSQSVGNLVHDIARELPAAGHAELAAELDRRWHELGMPDGWPATQTRRRADA 947

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
            +     ++  +I      + V    ++ +      L G  DR++      V +TD KTG 
Sbjct: 948  MVRRLADYYTEISGE---VLVEESFEVQVGRA--VLRGSVDRLERSGEDGVRVTDLKTGR 1002

Query: 923  -NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR-KVANLFYIRLKQKFKIDCITNDKKK 980
              P    A    + QL     A+++G+F ++    +      + +    +       +  
Sbjct: 1003 GIPSVAEAAT--NAQLGAYQLAVESGAFPELGPGVRSVGAQLVFVGDGARGATRRTQEAL 1060

Query: 981  YSADELSEKSL 991
             + ++   ++L
Sbjct: 1061 ETGEDSWARTL 1071


>gi|228477218|ref|ZP_04061856.1| ATP-dependent nuclease subunit B [Streptococcus salivarius SK126]
 gi|228251237|gb|EEK10408.1| ATP-dependent nuclease subunit B [Streptococcus salivarius SK126]
          Length = 1130

 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 134/965 (13%), Positives = 275/965 (28%), Gaps = 137/965 (14%)

Query: 129  DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188
                +  L +             L D+   ++       DL  L         +   + L
Sbjct: 119  SHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQ-------VEKQEDL 171

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMS 247
                    + L+  +  +            + HL K     + +I G T        L++
Sbjct: 172  LRIFSAAQDLLLAGDFDNQSKLSAFFKEITSGHLDKALGNTVLVIDGFTRFTAEEEALVA 231

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             + +  +  ++          A +        ++              L  L     +  
Sbjct: 232  LLNDKCHQIVIGTYASQKAYRANFVYGNVYQASVDF------------LRTLAQTYKVTP 279

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            + V       N  + R   + +S     T D + TD  +            + + E  N+
Sbjct: 280  DYVTT-DKEGNPSFARISRLLESRHDFSTVDEQLTDQDK----------QALQVWEVVNQ 328

Query: 368  REEAISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            +EE   +A ++R  L + K+      L+  + +   +V     +F I         +S+ 
Sbjct: 329  KEEVAQVAKSIRQLLADGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEESMSSH 388

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                 + SL            +  LVK  L      E                   N  D
Sbjct: 389  PLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDL----------FEYYVNFAD 438

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
            I      + D  A  ++              D +    L   +++ +  L+  +  K S+
Sbjct: 439  IKGRHKFLSDFTANSRDKY------------DLDQLNTLRSQLVEPLDKLLNSRKQKGSS 486

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                 +     + V         +  +      E+  K  + L  ++         +  +
Sbjct: 487  LLKKLVVFLEAVQVPSQMASLTAKASEAEKEQNEQVWKAFTQLLEQVETIFGEETLSVDD 546

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            ++ I+   +     +        + +      +  +   +   G+ +  +PK       L
Sbjct: 547  FLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKSLL 606

Query: 665  SRVMQSDLNLKTAEKY--------IGQAAHDFEMAN---GTRHLIYTRSLRENNIPTIAS 713
            S   +S +N  T E            Q  H   M+     +  L+ ++    N      S
Sbjct: 607  SDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDDMS 666

Query: 714  RWLQRLLVLGGTDFFDNL---------------------------------------KKR 734
             +L+ LL LG                                                  
Sbjct: 667  VYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDADLDKETQTFWSV 726

Query: 735  GQCYLD---------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
               YL              +D  T      +         +P   S S +    N+ Y  
Sbjct: 727  AVRYLRKRLDKDQVLIPNVIDDVTTTKVDDQVMQLVFPGEEPLKLSASALTTFYNNQYLY 786

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHF 843
            + R +L L+ +      PD    GT  H +   ++    ++N  +           +  F
Sbjct: 787  FLRYVLGLEELESIH--PDARHHGTYLHRVFERVMGDSSSENFDDKLEKAIAQTNQEQPF 844

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
            E          + R +   I+ S         + ++         + +    I +TG  D
Sbjct: 845  ELLYTEDQESRLSRQILEDIARSTASVLRDNAA-VKVEREEAKFDLLLA-NSIKITGIID 902

Query: 904  RIDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANL 960
            R+D L  G + + DYK+G N      QK    + PQL     AL+     ++D  ++   
Sbjct: 903  RVDRLTDGALGVVDYKSGKN--VFDIQKFYNGLSPQLVTYLEALRQT--YKVDADQLFGA 958

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
             Y+ ++          +  ++  D+L+ ++ K L     L    E   ++      +  +
Sbjct: 959  MYLHMQDP------QLNLAQFGLDKLAAQAHKELT-YKGLFVASETEHLAGGNYDLQKTV 1011

Query: 1021 QSEYD 1025
               YD
Sbjct: 1012 --TYD 1014


>gi|319793173|ref|YP_004154813.1| exonuclease-like protein [Variovorax paradoxus EPS]
 gi|315595636|gb|ADU36702.1| exonuclease-like protein [Variovorax paradoxus EPS]
          Length = 851

 Score =  177 bits (449), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 98/707 (13%), Positives = 193/707 (27%), Gaps = 75/707 (10%)

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
            +     L   +       +  A   A +  +EA   A  +   L E +   ALI  DR L
Sbjct: 210  LWGDHALHLSLVPANTSVAPAASHVAADPEDEAELAAACVLRHLAEGRAPVALIATDRAL 269

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
             RR+  +L   GI      G  LSTT  ++ L S L A         +   +K       
Sbjct: 270  TRRISAQLKAQGIVTHDETGWKLSTTRAAATLMSALRACAHDAASDQVLEWLKSG----- 324

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        D  +L +  +  +     +  W +  S   + 
Sbjct: 325  ---------------------------ADGDALAVQALEVRLRREGLRDWSAWCSLVARS 357

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                 V  +          +  + S   +  +++W +     L+               +
Sbjct: 358  EKPNDVALLPYT----EAIEARRASMMKSRPVAEWLRALRELLEGSGQWTPLADDMAGGK 413

Query: 579  E-EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET-VKPKIEKSSTLFILGTLES 636
                  L +      +     +    E+   +  +++  + V P  +++  + +L   + 
Sbjct: 414  VIAALWLDADSHGDADEFPGGRHTLAEFTAWVRDVLEDASFVPPTGDQAPRVIVLPLYQL 473

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
                F  +++ G ++   P +       S   + +L L + E         +  A     
Sbjct: 474  LGRAFGAVVIPGCDDRRLPASPEPPGNWSAAQRLELGLPSRETLEAAQRSAWAAALHNPW 533

Query: 697  LIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                    +    P   S  +Q L +        + +      +  T     +       
Sbjct: 534  CELVWRQSDASGEPVRPSPLVQALQLDHVLQPTVDPRPARDVTVQPTAVPTPSGALLPL- 592

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                        +  S S  + L   PY  +A R L L        + D+ D G   H +
Sbjct: 593  ------------QNISTSVYEDLRRCPYRFFALRQLGLRSADELDVEVDKRDFGNWLHAV 640

Query: 816  ITELIKKR---INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            +    +       ++  E    +++       +  L     + +   +  +   +L    
Sbjct: 641  LGHFHEALIETPTQDAHERVAFIEEAAQRATREYGLSDAEFLPFAAAWPAVRDGYLVWLA 700

Query: 873  KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA--Q 930
              +     +FV           G+ L G  DR+D    G   + DYKT      +     
Sbjct: 701  GHEVGGA-VFVESEPWKEQPLGGLRLVGRLDRVDRTSDGQAFVIDYKTESASVTKERVKD 759

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA-DELSEK 989
               D QL+  AA +                 Y+ + +K              A D L   
Sbjct: 760  PTEDTQLAFYAALVAD---------DTLRAAYVNVGEKSSGTQTVEQPAVVEARDALVAG 810

Query: 990  SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREE 1036
             + +   I            +                L R   W   
Sbjct: 811  IMSDFTRIAEGAALPPLGEGA-------VCDYCAARGLCRKDFWEVS 850


>gi|297571781|ref|YP_003697555.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932128|gb|ADH92936.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
          Length = 1044

 Score =  177 bits (449), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 109/1018 (10%), Positives = 266/1018 (26%), Gaps = 141/1018 (13%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADL-LLSYNLNP 101
            + + +  P +RA  ELR+  +   G   + T    ++S+        +A    +      
Sbjct: 57   SRIAVLSPDRRAATELRNTLVTDMGVLGEGT---RVQSIAAFAFGIVSAYAQAVGRREPE 113

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             +S   +   +  +I +         +        ++    A+         D+I     
Sbjct: 114  LLSGPDQDALIKDIIDV-------STRYYPSGMLGTINPDVASLEAFRSEYRDLITRAAE 166

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW----------TERLVELNASSPVGYQ 211
                   L     +     W++ A+ ++                 +R       +     
Sbjct: 167  LGITSSQLAQYGEQADNPSWVIGAELMEKYEDALAVQAAVGHQNPDRTDHSRIVTQAAAF 226

Query: 212  IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
            I      AE  +  T   + +        A   L+  + +  NG  V+   D       +
Sbjct: 227  IQQWGGHAELSLCPTWDWVFVDDLANCTLALRSLLRVLQD--NGTCVVVCGDPDAGVQSY 284

Query: 272  NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                 +   +     T              +    +         S     R+       
Sbjct: 285  RGGIHQLQALIEQPRTAGGLGARRYVLAHRYRGGGQLAPYISKVTSGIHVSRAA------ 338

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---K 388
                           +     +  FS    + A    EE   +A  +R   +E+      
Sbjct: 339  ----------QQRSADYTYAPECAFSGHTFVSAH---EEIAYLAQRMRHIHNESGVAYAD 385

Query: 389  SALITADRNLARRVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNAIFKLND----F 443
             A+ T  R+    ++  L   GI +    +  PL      S L  ++     + +     
Sbjct: 386  MAVFTRSRSGHENLRHALMDHGIPVQPLPSVTPLRFQGAVSDLLLMIKTACGMGEEAEIA 445

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
             AI TL+  P   +          +     +   G +          L+        NN 
Sbjct: 446  EAIRTLLVGPFFGYTAAHIAALNRQMHGWEIFYGGKRQG------DRLLAAMFEEGPNNP 499

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                 +        E     V              + + +        D         + 
Sbjct: 500  AADIPEFNKIRSVAERIRRAVQ-------------SEQRAERVLWEAWDGLGKAEEWREE 546

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
            V     +        +    L  +  ++ +              +  + +  +++     
Sbjct: 547  VLAGGVQADIADANLDAVIQLFRVAQRLADRDPANALIGDLIRVLEEQDVPEDSIARTSA 606

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD-------LNLK- 675
             +  + ++        ++  + +  +N+G+WP    +NP                     
Sbjct: 607  GAEGISVVSPTAGIGRSWGYVFISQVNDGIWPNLRLRNPLTRVPELVSIVVGSELAGAPV 666

Query: 676  -----TAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWL--QRLLVLGGTDF 727
                  AE    +              +  T    ++NIP+    WL       L     
Sbjct: 667  QGIQQVAEVLDDELRMLLFCMTRATDGVEITCVESDDNIPSRFVPWLFSDDSGALLTHHS 726

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------------------- 768
               +      ++   R+             + +    A+                     
Sbjct: 727  HAAVTLDSATFIGQLRQAQRQGHDRIAASARDYLQKMAEHDIAGMGQKLWVDDLEYTKRE 786

Query: 769  -------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                     S S ++ ++  P                   +      GTL H I  E   
Sbjct: 787  SEDVETIRISPSAVENMLTCPLRGVLD-----SANGQSLGNASLAHVGTLVHQIAEE--- 838

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                +   ++       + + F+         +  R +   +     ++  +  ++ ++ 
Sbjct: 839  --TEEPDLDMMRARLDELWAVFDFGTDLADQQLYERAV--GMVTKLHQYLTENPATEQR- 893

Query: 882  FVNIPAKMAIESIGIHLTGFADRI---DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
               + A++  +  G+ ++G  DR+   D+  S  V + D+KTG +  ++       PQL 
Sbjct: 894  --ELYARVERD--GLVVSGKIDRLEFSDMDPS-AVRVVDFKTGKSSPRKE-DADRVPQLL 947

Query: 939  LEAAALKAGSF----SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
            +    ++ G            +      + + +  +       ++     E ++++ +
Sbjct: 948  IYQWLVEQGGVIMPEGGQTPTRSLGARLVHIGK--ETQGYGLTEQSELDAERTKEAEQ 1003


>gi|314933178|ref|ZP_07840543.1| ATP-dependent nuclease subunit B [Staphylococcus caprae C87]
 gi|313653328|gb|EFS17085.1| ATP-dependent nuclease subunit B [Staphylococcus caprae C87]
          Length = 1155

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 119/960 (12%), Positives = 275/960 (28%), Gaps = 139/960 (14%)

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIA 191
            ++ L L  S +     ++ LA+ I   +      + L+    E           + + + 
Sbjct: 104  DTELKLYRSQSKYYGFSEKLAEQIQDFKKYSVTPDHLNQFIKEHQLQTRTQHKLEDITLI 163

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             K    R+     ++    +  + +          +  I I G         R++  +  
Sbjct: 164  YKELESRMSGEFITTENSLERFIDQMSKSEW--LRRAEIFIDGFYNFSTLEYRMIEALVQ 221

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
            H     VL   D                ++    +   TH +    +L   L+      +
Sbjct: 222  HAKSVTVLLTTDGDQDP----------FSLFRKPSEVLTHLEDIANQLNIQLNKTLFHQR 271

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                  + M+  S   +    P   S                   + V ++E+ N REE 
Sbjct: 272  FRFKNDDLMHLESDFDALQMTPLSHS-------------------NHVEILESSNIREEV 312

Query: 372  ISIAIALRMSLDEN---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
              +A  +   + +N    +  A++  D + A       + + I  +I     +S      
Sbjct: 313  NELARRIIRDVRDNQLRFQDIAILYRDESYAYLFDSIFSLYDIPFNIDTKKSMSHHPIME 372

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            ++ SL+  I    +  ++  L K  +    F         + LE  AL         +D 
Sbjct: 373  MIRSLIEVIQSNWNINSMLRLFKTDVLTAQFKHSSYL--IDLLENFALERGVYDKRWLDE 430

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLS-EEDKELAVLLVDHILQ---CITPLVTYKTNKNST 544
            +   +D+       +H    Q + + EE   L   ++D +L     ++   T +    + 
Sbjct: 431  EVFHVDQFNKMGRKSHALTPQEKETYEEVIRLKNNVIDKVLYFEKAMSEAHTVRDFATAF 490

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
              ++   +     +T    +     +       ++    L  +   ++      +    +
Sbjct: 491  YESMEYFELPNQLMTERDEL-DVAGKHQQAEEIDQIWNGLIQILDDLVTVFDTQEMTLKQ 549

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            ++++    ++        +    + I     +++ N   + + G+N+G  P+  + +  +
Sbjct: 550  FLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYMVGMNDGSLPQPVSSSSLI 609

Query: 665  SRVMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSLREN-NIPTIASR 714
            +   +             T++      A      M      + ++ SL  N       S 
Sbjct: 610  TDEEKKYFEQNAQIELSPTSDILQMDEAFVCYIAMTRACEKVTFSYSLMGNSGEEKEISP 669

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYL----------------DWTRKLDYTTKQPHYKRPK 758
            +L ++  L       N++++ +                      R LD+      +    
Sbjct: 670  FLSQIKDLYHNLDIVNIQRQHEEQPIGLMQHVHQTKIELFDTLRRWLDHEDVDIRWLDAY 729

Query: 759  PFPPLEAQPRT--------------------------------YSFSEIKQLINDPYAVY 786
                 + +                                    S S  +     P+  Y
Sbjct: 730  QVIRDDERLNEGLDYLITSLTYDNETVQLNETLTKQLYGKTINASVSRFEGYQQCPFKHY 789

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            A   L+L+     K +    D G +FH+++  +  +            ++ + +   E  
Sbjct: 790  ASHGLRLNERS--KYELQNFDLGDIFHSVLKHISDRVEGDFKNLDRKKIRALTEEALELI 847

Query: 847  NLPPHIDII--------WRHLFHKISHSFLEHEEKI--QSSIEKIFVNIPAK-------- 888
                  +++               I  + L   +     S           +        
Sbjct: 848  LPKVQFNLLNSTAYYKYLSRRIGSIVETTLNALKYQTGFSKFVPQRFETGFRKSPKNRDE 907

Query: 889  ------MAIESIGIHLTGFADRIDLL--KSGFVD-ITDYK--TGDNP-KKETAQKLIDPQ 936
                     + I I++ G  DRID           I DYK  TG            +  Q
Sbjct: 908  LVAKPLHTRQGIPINIRGQIDRIDTYTKDDHSYVNIIDYKSSTGSATLDLTKVYYGLQMQ 967

Query: 937  LSLEAAALKAG----SFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSL 991
            +      +         + I   K   L Y  + + + K D  +   ++    EL +   
Sbjct: 968  MMTYMDIVLQNKDRLGLTDI--VKPGGLLYFHVHEPRIKFDNWSKIDEEKLNKELIKSFK 1025


>gi|150024265|ref|YP_001295091.1| hypothetical protein FP0155 [Flavobacterium psychrophilum JIP02/86]
 gi|149770806|emb|CAL42271.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 922

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 149/402 (37%), Gaps = 35/402 (8%)

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
           I  ++ID   V  + E  S L I+G LESR+L+F+T+I+  LNEG +P     N F+   
Sbjct: 492 IYKQVIDLAEVSFEGEPLSGLQIMGVLESRVLDFETVIITSLNEGKFPAGKTVNSFIPYD 551

Query: 668 MQSDLNLKTA-EKYIGQAAHDFEMANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725
           ++ +L L T  EK      H + +    +++    +   +       SR++ +L V    
Sbjct: 552 VKRELGLPTYKEKDAIYTYHFYHLLQRAKNIYLLYNTESDGLDGGEKSRFITQLEVEKQP 611

Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                 +       +       T   P  K         A  + +S S +   I +P   
Sbjct: 612 KHNLTHEIIQPVVPNIAS---KTIVIPKAKSAMIRLKEIATGKGFSPSALTTYIRNPIQF 668

Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR---------INKNTPEINHLMK 836
           Y +RIL +      +++      GT+ H  +  L K           +NK     N  + 
Sbjct: 669 YFQRILSIRESEEVEENIALNTLGTIIHQTLEALYKPIINKFLTTDDLNKMLAVANDEVL 728

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI---FVNIPAKMAIES 893
           +     +++  +    +++   +  +   +FL  E+K   + + +    +  P +  +E 
Sbjct: 729 KQFKEIYKEGEVKKGKNLLAFEVAKRNVFNFLIEEKKQIENGDVVKILALETPLERILED 788

Query: 894 I----GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE-----------TAQKLIDPQLS 938
                 I + G  DRI++  +  + I DYKTG   K               +     QL 
Sbjct: 789 NSLPFPIKIAGNVDRIEIR-NNKIRIIDYKTGKVEKNSVQLKDWNGLTLDIKNDKIIQLL 847

Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
             A   +  +       +   + +  +K  F    I   K+ 
Sbjct: 848 CYAFMYEKQA--NGLEIEAGIISFKNMKGGFLPFGIKQGKEI 887



 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 60/456 (13%), Positives = 123/456 (26%), Gaps = 99/456 (21%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F   ++  LL+               +L+  TI +P KRA   L   F +      T  P
Sbjct: 6   FLENLVSKLLSEKKT-----------ILSETTIILPNKRAKIFLLEAFKKKLPH-FTFAP 53

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
            I S+ D ++E      + S  L         L E   + L    K      + +     
Sbjct: 54  EITSIEDFIQEIANIRSIDSIEL---------LFEFYTVYLSVTAKEKQQTFEQFSNWGK 104

Query: 137 SLPISPA--NAIWLAK----NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
           +L       +   L      +    I++I+    + ED   L  + Y  +W      L +
Sbjct: 105 TLLQDFNEIDRYLLDPKHVFSYLQDIEVIKRWGIEIEDKTTL-IDNYLEFW----KLLPL 159

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
               +   L               +    E +       I+ AG      A  +++  + 
Sbjct: 160 YYDTFYTHLKNKEIGYQGLIYREAVTNLEEFITAFKNKKIVFAGFNALNQAEEKIVQQLI 219

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
              + A +   +D        +                              L ++R   
Sbjct: 220 -AKDIASIYWDIDAVFLNDYSHDAG---------------------------LFVRRFKS 251

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                 +N     S   S+                            ++ +I       +
Sbjct: 252 SWSHYKTNPFEWVSTNFSE--------------------------DKNIQIIGTAKAIGQ 285

Query: 371 AISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
           A  ++  +   + +N      K AL+  D N+   +   L     +++I+ G        
Sbjct: 286 AKIVSGIINKQISDNPNASLDKVALVLGDENMLIPMLHSLPASVGSLNITMGYSSKNNPI 345

Query: 427 SSILTSLLNAIFKL---------NDFMAIATLVKHP 453
             ++  L                  +  +  ++ +P
Sbjct: 346 QLLIAKLFKMHNNALNRSESSYVFYYKDVLDVLSNP 381


>gi|300779590|ref|ZP_07089446.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium ATCC
            33030]
 gi|300533700|gb|EFK54759.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium ATCC
            33030]
          Length = 1100

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 129/1081 (11%), Positives = 263/1081 (24%), Gaps = 181/1081 (16%)

Query: 46   SVTIYVPTKRAIQEL-------------RSEFIEITGKKSTILPIIKSLGDVV--EEKFT 90
             V     T++A  EL               + +        +   ++ +   V   + F 
Sbjct: 65   EVLGLTFTRKAAHELGRRIRTRLEKLAANEQLVRHLDPSGGLAETLEVIAPTVSTYDAFA 124

Query: 91   ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             DL+  Y L  PV    RL+  A L  I  + + +    L      +  +S         
Sbjct: 125  GDLIREYGLLVPVEPDARLITDAELHSIAWDVVSNHGGALLDGVDANPGVSTVV-----D 179

Query: 151  NLADIIDIIETEEKKWEDLHALKNE-------------------KYGMW--WLLAADFLK 189
             L  ++  +  +      +                         +   W           
Sbjct: 180  TLLRLVANMGNDLMPPSRVREEAEAFIDNVAALPRGRAKEQYAKEVRGWIDKQRLRAAYT 239

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATAR 244
              ++  +  L E    +         +  + H       +G    +++     +  A   
Sbjct: 240  DLAEELSRELRERGVVTFNEQMSVAAQLASNHPSVGESQRGRFRVVMLDEYQDTSHAQRV 299

Query: 245  LMSTV--------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
            L+ ++        A HP+   V    D       W   T  +      +   +       
Sbjct: 300  LLRSLFGENRDDLARHPHPLTVTAVGDPMQAIYGWRGATAANLQAFVDDFPLADGASAPK 359

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
            A+L                         + ++ S              +E   PN     
Sbjct: 360  AQLTTSWR---------------NPPEVLALANSVSSAVLGAPGPQRAVEPLNPNPASDP 404

Query: 357  SDVALIEADNEREEAISIAIALR-----MSLDENKKKSALITADRNLARRVKLELTRFGI 411
             +V +       EE  ++A  L         +     SA++      +  +   L   GI
Sbjct: 405  GNVEVGFYGPVDEEIAAVADMLAADFHEQLAEHGDVSSAVLVRKNKQSALIAEALEERGI 464

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              +I     L T    +   ++   +    D  A   ++  P    G  +      +   
Sbjct: 465  PYEIVGLAGLLTVPEVADAVAVAKMLVHPQDSAAALRILAGPACGLGLKDITALSRRAVN 524

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE------DKELAVLLVD 525
                   +++   +  L      R   Q   T +         E        +    L +
Sbjct: 525  LAGGRAHDQDDSAVAGLGPDADPRERLQAQLTDLIREAENAVGENERSVGLADAVADLGE 584

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
                    L   +   +        S   +L       V +   R        + G    
Sbjct: 585  PERYTEEGLARLQVLSSQLRALRMRSLGKRLPDLFDDIVSIFGIRTEVLSRPSDTGTVHL 644

Query: 586  SLFSKIIETGSCIKANA-IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
              F++ + +         + ++++ T   DG            + IL   +++ L + T+
Sbjct: 645  DKFAETVASYPGADLEGFLNYLELATEHEDGLAPGTVANTGDRVQILTAHKAKGLEWRTV 704

Query: 645  ILGGLNEGVWPKNTAK-------------NPFLSRVMQSDLNLK--------TAEKYIGQ 683
             +   +   +                           +SD            TAE     
Sbjct: 705  AVAHADAATYGGTAETFLGYVATVPDDSYTALAEADTRSDFQKLTNQYKKDKTAELAEES 764

Query: 684  AAHDFEMANGTRHLIYTRSLR---ENNIPTIASRWLQRLLVLGG---------TDFFDNL 731
            A   +         +   +         P            +           TD   ++
Sbjct: 765  ARLFYVAVTRAERRLLVTASGISPTRKKPVEPYSHFLPFRDMAEVLSWWDGTVTDELTDI 824

Query: 732  KKR---GQCYLDWTRKLDYTTKQPHYKRPKP---------------------------FP 761
            ++R      Y      +D   +     +  P                             
Sbjct: 825  REREGFWPHYSAEPAAVDAAERVNAALKDLPQLTAGELYGLWERDVTALIEEHEATMSPS 884

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                 P   + S+I  L  +P    ARR  +               RGT FH  I     
Sbjct: 885  VPVIMPAMLTASDIVALRANPEQF-ARRARRPVPFKPNSY----AKRGTAFHEWIEGFFG 939

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
             R   +  E+               N  P +D                 E    +     
Sbjct: 940  ARPLLDDDEL-------------PGNTEPDVDATTLARLK------ASFEASHWAQRAPA 980

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLL------KSGFVDITDYKTGDNPKKETAQKLIDP 935
             +  P ++ + S  +   G  D +           G   I D+KTG  P+    +     
Sbjct: 981  HIEHPFEIDLGSASV--RGRIDAVYRDAPTPEAPHGSWTIVDWKTGAKPQATEMRAAK-L 1037

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            QL++   A K  +   +      N  +  ++           ++    + L   + + L 
Sbjct: 1038 QLAVYREAWKRIAGDGL----PVNAVFFYVRTGEDFAPHDLPERGELEELLQTAAARGLE 1093

Query: 996  E 996
             
Sbjct: 1094 S 1094


>gi|320529154|ref|ZP_08030246.1| putative ATP-dependent nuclease subunit B [Selenomonas artemidis
            F0399]
 gi|320138784|gb|EFW30674.1| putative ATP-dependent nuclease subunit B [Selenomonas artemidis
            F0399]
          Length = 1181

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 113/994 (11%), Positives = 256/994 (25%), Gaps = 146/994 (14%)

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
               E+    +  L      G          L       P +S+I   + L  +++     
Sbjct: 52   ALAEVLTSGAGFL-QAYVFG-FRRFARQVLLETGGAHLPRISDIGMRILLKDILIKRAGD 109

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            L    + ++                  + L   I  ++      + L A  +        
Sbjct: 110  LSAFARSVHKR-------------GFTETLGSTIAELKRYRIHPDILRAAADRSSTGRLP 156

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                 L I  +    R+      +    ++  +  +           I + G     P  
Sbjct: 157  QKLADLSIVMEELAARME--GRYTDQTDRMERLAWQLGTASFLRDAEIWVDGFDFFNPQE 214

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
              +   + +      V   ++           T+ +  +     T  T       + +  
Sbjct: 215  LAVFRALFHAAGALHVTLTME--------GRCTDGAVRVNLPENTRETGLFSRGYRAMRD 266

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            L+    ++    + S  +       ++  L    + +     L             + L+
Sbjct: 267  LEQILAEIDPQASASIRLMEEQRRTAQLSLAAIETRLFGHGQLSP------CGDGALRLV 320

Query: 363  EADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAG 418
            EA N R E  + A  +     E     ++ A+   D      +       +GI   + A 
Sbjct: 321  EAANPRLEMEAAAADILRLTREQGYRYREIAVFVRDMPCYAELLTLTFADYGIPCYLDAK 380

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA----------KFGFPEKYLSRAK 468
             P +    + +L +     ++  D+  +   ++              +   P      A 
Sbjct: 381  RPSTHHPLAELLRAAARTAWRGWDYETMFRALRTGFFPVLGASEEETQVLAPSGDWQEAV 440

Query: 469  NALE-LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
            + LE      G +        +     R A   +        +R++EE+   AV      
Sbjct: 441  DRLENYCLAYGIRTQRQWTATEDWDFARRAIAADAYESEDNAARIAEEEAIDAVRRRIAA 500

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWT-----KLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
               +      +    +     ++ +          +   +     E R        +   
Sbjct: 501  PLALLKERLSRAQGTARTRTQALYELLMELDVPRVLETWRTAADAEGRLADAAAHRQIWT 560

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
            +  +LF +++ETG   + +A ++ +I+   +D   +         + I    ++ L    
Sbjct: 561  SCMNLFDQMVETGGDEEISAHDYEEILGDGLDALDIALIPPGLDHVTIASFDQNSLAGIR 620

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK---------------TAEKYIGQAAHD 687
             + + G N G  P+  A+   LS   +  +N                   E+   +    
Sbjct: 621  AVYIVGANAGTMPRAGAQQGVLSDAERLSMNEMFHALHEGVAPEIFGGGREQSFLERYRL 680

Query: 688  FEMANGTRH-LIYTRS-LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
            +      R  L  + +    +      S  + RL  L    F        +         
Sbjct: 681  YRGFTAAREYLWVSYALAGSDGSALSPSPLIARLRRL-EPSFLSIPLATVEREDALVLAA 739

Query: 746  DYT--------------------------------------------------TKQPHYK 755
                                                                  +     
Sbjct: 740  PRPALSALSSALLGQKERGDMRPLWWDVYNWMRDDEEMRPSLRLMVGGLFAHLRETEIPP 799

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                      +    S + ++     P++ +A+  L L        +    D GTL H I
Sbjct: 800  AVAVRLFAPHRRIAGSTTRLEAFRACPFSHFAKYGLALRERE--VYEFQNNDFGTLLHGI 857

Query: 816  IT---ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW--------RHLFHKIS 864
            +    E ++     +        ++ ID    +        ++              + +
Sbjct: 858  LRGYGEWVRATHRNDWSAAAQEGEEKIDELLAQIVPQVRSAVLLSRASYRHRVERIRRTA 917

Query: 865  HSFLEHE--EKIQSSIEKIFVNIPA---------KMAIESI-GIHLTGFADRIDLLKSGF 912
               +         S        +           +  +     + L G  DR D+ + G 
Sbjct: 918  RQVIRRLTAWAAASEFRPQGFEVGFGGHDGVRIAEFPLAGRMTLSLRGQIDRYDVSEDGA 977

Query: 913  VDIT-DYKTGDNP-KKETAQKLIDPQLSLEAAAL 944
              I  DYKTG    +    +  +  QL L    +
Sbjct: 978  YYIVLDYKTGTVSLELPEIRHGLKMQLLLYLYVV 1011


>gi|313632208|gb|EFR99277.1| ATP-dependent nuclease subunit B [Listeria seeligeri FSL N1-067]
          Length = 1056

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 119/963 (12%), Positives = 279/963 (28%), Gaps = 136/963 (14%)

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
           L +     +       LA++   ++ EE    DL     +            + +  + +
Sbjct: 4   LKVFSRATSRKGFYSELANLFKEMKQEEVSITDLEE-SAKMLPTSVNNKVHDISLIYQKY 62

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
            E L            + L+  +        +  III G          ++  +    + 
Sbjct: 63  EELLA--GKFLENEDYLKLLADKIAESDYLNQTEIIIDGFNSFSKQELTVIEKLMQKCDK 120

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +   L+      I   + E S    S+         YSL +     +I  E++K L  
Sbjct: 121 LTISLTLNV---PEIERGLEEFSMFRASTEAY------YSLLETAKLNNIPVEEIKLLLE 171

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                      ++  +                   + Q   +++ + +A+N+R E   IA
Sbjct: 172 NKRAKTPPLEFLANVWGQNKF-------------ASFQGETTNLNIHQANNKRAEIEGIA 218

Query: 376 IALRMSLDENKK--KSALITADRNLARRVKLELTR-FGINIDISAGIPLSTTLHSSILTS 432
             +R       +    A++T +      +   L   + I I I     ++       + S
Sbjct: 219 REIRGLTSNGYRYKDIAILTRNLGDYDVLCETLMEDYNIPIFIDKKRAMAKHPFIEFIRS 278

Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPE-KYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            L+AI     +  I   VK         +   + R  + LE   L     +    + K  
Sbjct: 279 SLDAIQFNWKYEPIFQAVKTEFFFDSAADVADMRRKSDILENYVLENGIQNKWKWEKKGD 338

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            + R         +       ++E+  +  ++ +   + + PL T +TN       + ++
Sbjct: 339 WIYR-----KIRGLSINVLPQTDEELNIQNMINEMKNRIVIPLSTLETNLAKAKTGIELA 393

Query: 552 DWT---------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                          +   +    +          E+   ++++L  + +E         
Sbjct: 394 LALYHYLEQVQAAEHLEAWRRTAEENGYLELAREHEQAWTSITALLDEFVEVLGEESLEL 453

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI-------LGGLNEGVWP 655
             +++II   +D             + +     ++LL+   +        +  L +    
Sbjct: 454 SSFMEIIITGLDALEFSLLPPSLDQVILSDMENAKLLDMKVIFAIGMNDGVMPLRQKDKG 513

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEK--YIGQAAHDFEMANGTRHLIYTRSLRENNIPT--- 710
             + ++    R   S L              A+       +  L  +  + +        
Sbjct: 514 ILSDQDRESLREQNSSLKASAKNNIGEEDLLAYKIVSLP-SDKLFLSYPVADEEGKVLSE 572

Query: 711 -----------------------------IASRWLQRLLVLGGTD-FFDNLKKRGQC--- 737
                                          SR+++      G       + KRG     
Sbjct: 573 SNYLRKIKGQFKNLNEEIYLTDPSLLSDEEQSRYIRSKRAALGLLTSQLQMYKRGYPLSN 632

Query: 738 --YLDWTRKLDYTTK---------------QPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
             +  +    D   +               +    +      L  +    S S +++  +
Sbjct: 633 VWWDAYNSYFDDKKESKNAKQVLSSLYYENKTEALQEATAKGLFGEDIHASVSRMEKFFS 692

Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------E 830
             +  +A+  LKL+   HF+      D G +FH  +  + ++    N            E
Sbjct: 693 CEFQHFAQYGLKLEERAHFQ--LQAVDMGEIFHAAMEWISEELKRNNLDWGNLTVEECKE 750

Query: 831 INHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPA 887
           +  L  + +    + E L         ++   +I      + +E+   S+   + + +  
Sbjct: 751 LAKLAMKFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEVDF 810

Query: 888 KMAIESIGIH----------LTGFADRIDLL-KSGF--VDITDYKTGDNP-KKETAQKLI 933
            +  +   +           L G  DRID+  +     + I DYK+  +          +
Sbjct: 811 GLKGDIPPLKIPLQSNRELLLQGRIDRIDVAEEDNRTFLRIIDYKSSSHDLALTEVYYGL 870

Query: 934 DPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
             Q+      +   +   I    + A + Y  +  +F        +++ + +      +K
Sbjct: 871 ALQMLTYLDIVVTNARKMIGKSAEPAGVLYFHMHNQFVQAEKELTEEEIAKEIQKASKMK 930

Query: 993 NLI 995
            LI
Sbjct: 931 GLI 933


>gi|28379195|ref|NP_786087.1| ATP-dependent nuclease, subunit B [Lactobacillus plantarum WCFS1]
 gi|81630834|sp|Q88U40|ADDB_LACPL RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|28272033|emb|CAD64938.1| ATP-dependent nuclease, subunit B [Lactobacillus plantarum WCFS1]
          Length = 1201

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 110/1003 (10%), Positives = 278/1003 (27%), Gaps = 165/1003 (16%)

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
            P +S     + L R++    ++L     ++                     LA  I+ ++
Sbjct: 92   PRLSAAGIDMLLYRILQRHADELRLFGGEISQT-------------GFVTQLAREINELQ 138

Query: 161  TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
            T   + ED+  L               L I  K +     +     P    + L      
Sbjct: 139  TANLQPEDVVQLAANAQAGDLQAKLHDLAIVYKDFVAATADKYLK-PADILVQLNAYLRR 197

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              + GT   + +AG          +++T+     GA V   L           +     N
Sbjct: 198  QDLHGTHVYVELAGFAQLPAQEQGIVTTM--LEQGADVTISLMLD-----HKVVDRAPEN 250

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
             T    +   + +      +  + + ++    +   +  +    + +   +     +   
Sbjct: 251  GTLFYQSGRLYYRLYQYARIRQIPVSQD----IYAETPRVAPGLVALDDFWRGQPQAATG 306

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---------SLDENKKKSAL 391
              +             ++V L   D+ + E   +   +R          + D + +   +
Sbjct: 307  YEEPN-----------TNVHLFRTDSRQTELAQVGRMIRAMVAKKHADPADDYHYRDFLI 355

Query: 392  ITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            +T   +  + +         I   +     ++      ++ +L +   +   +  +  ++
Sbjct: 356  MTRHLDAYQTMLAPTFHELEIPYFVDLQRSMADHPLVELINALFDIDAQQYQYRDVMRVL 415

Query: 451  KHPLA-----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
            K  L            +   +A +  E   L+   +    +  +     ++ T+ +    
Sbjct: 416  KTELLMPNINGQPMDRQAYRQAVDLTENFILKSGYHGQRWVQREDWQYFQL-TEGDAGVE 474

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI--SDWTKLTVTCLQN 563
                + +S +   +   + + +      +      K +    ++   S      +   ++
Sbjct: 475  TDQNAEISRQINLIHHFVAETLPPFFKKMRQAPDGKAAVTLLVNFLTSQGVTDQLLAWRD 534

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
              LD          E+  +T   +  + +           +++ ++    +G +      
Sbjct: 535  QALDRQDVRAAAEPEQTWQTFCGMLDEYVTILGAEPFEITDFLALLQAGFEGASYSQIPS 594

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL----KTAEK 679
                + I  +   +  +   + + G  + V P     N  LS V + +L L       + 
Sbjct: 595  TLDQVLISESGMVQSQDHKVVFMVGATDLVMPDRIMTNNLLSDVDKENLQLTLSSLDGDH 654

Query: 680  YIGQAAH----------DFEMANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGT 725
            Y+  +A                +  RHL ++  L+++    +      R +QR   L   
Sbjct: 655  YLNDSAVVQLGDESCLNYLAFLSARRHLFFSAPLKDDQETDLNWSNYVRRIQRQFNLREH 714

Query: 726  -----------------------------------------DFFDNLKKRGQCYLDWTRK 744
                                                     +      +    ++   ++
Sbjct: 715  TYLGTPDPTNADARPFVGTKRRTISHVIQVYRDVLTTNTDRNRVGAPLQPAPVWVWLRQQ 774

Query: 745  LDYTTKQPHYKR----------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
            L    +     R                P     L       S S++++   + YA + +
Sbjct: 775  LTRDPQFGELARQLMAGLSYRNQPVKLTPASVEALYGHQIYTSISKLEEFYRNQYAYFLK 834

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH-------LMKQIIDS 841
              LKL     F+        G  FH ++  LIK   +   P            ++ +   
Sbjct: 835  YGLKLRERDVFE--LSAASTGEFFHAVLDGLIKALRSDQIPLAQASDQQLGQYLETVTRQ 892

Query: 842  HFEKENL----PPHIDIIWRHLFHKISH--SFLEHEEKIQSSIEKIFVNIPA-------- 887
              ++         +     +          +F    +   S+ E     I          
Sbjct: 893  ILDQPQFTILTSSNRMAYLQRQLINTVRQIAFAIRNQSKLSAAEPKQTEILFGNVGKEHG 952

Query: 888  ----KMAIESI-GIHLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLS 938
                   I++   +H+ G  DR+D   +       I DYK+  +    + A   +  Q+ 
Sbjct: 953  LKALDFQIDATHSVHVRGKIDRLDQIQVADQSYLGIVDYKSSQHKFDFQEAYYGLAMQML 1012

Query: 939  LEAAALKAGSFS----QIDCRKVANLFYIRLKQKFKIDCITND 977
                A+     +         K+A   Y+ ++           
Sbjct: 1013 TYLDAVLHNEQALVGSDQAAVKLAGALYMHIQNPTLKPKDIQG 1055


>gi|323359567|ref|YP_004225963.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037]
 gi|323275938|dbj|BAJ76083.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037]
          Length = 1064

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 123/1031 (11%), Positives = 261/1031 (25%), Gaps = 109/1031 (10%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TLV   R    + +    + +  PT+     LR     +   ++T   + +SL     + 
Sbjct: 64   TLVARVRRLVESGVDPDDILVLTPTRPGATALRDPLA-LAVGRATSGALARSLASFAFQL 122

Query: 89   FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
                 +   N  P +          +++    +       +     P  L  S       
Sbjct: 123  VRGAEVRRGNEPPQLLTGGDED---QIVKDLLDGDAADESEGISRWPEWLGPSIRATRGF 179

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK-YWTERLVELNASSP 207
              +L   +          +DL AL ++     W   A F +         R    +A+  
Sbjct: 180  RGDLRAFLAECTNLGLSPDDLSALASQHGVEVWESLASFTREYRHIRRRMRGAHRDAADL 239

Query: 208  VGYQ----IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                       +R             I++  +         L+        G  V+   D
Sbjct: 240  AREAVGILDDALRDRDVLGRFAALRCILVDDAQELTSGGVDLLRACRTLGIG--VVAFGD 297

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
              + +  +   T ++    +                L  L           ++   +  R
Sbjct: 298  PDVGSGAFRGATPENFARLARELGD-----------LAALRRVHRGTPEQADLVRSVAAR 346

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
                                    + P        V      +  EEA +IA  LR    
Sbjct: 347  VGAAGVVAHR--------------RAPEGAASTGSVRTFLLRSPAEEADAIARLLRERHV 392

Query: 384  ENKKKS---ALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFK 439
             +       A+I  D      ++ EL    +    S  G+ L        L +L+     
Sbjct: 393  LDGIAWGQCAVIAHDSRQVAALEAELAAREVPARSSGPGVALGAQRPVRDLVALVELGAT 452

Query: 440  L---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    ++   +             L R +  L    +R                   
Sbjct: 453  DPSEWTPESVTDALLGTFGG--LDPIELRRLRTVLRHEEMREGGT-----------RSAG 499

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                +    P   + +   +   A  L + +         + T           S  ++ 
Sbjct: 500  EVLASGLRHPLEFATIDSREARRAARLGETLAALRAQAEQHATAHELLWTAWERSGLSRS 559

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                 +       +   +L         +  F++    G      A  ++  I      E
Sbjct: 560  WREASRGHGPLAEQANRDLDAIVALFQAAKRFTEREPDG-----EAAVFLRAILDSDVAE 614

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---- 672
                +      + +L    +    FDT+I+ G+ +GVWP    +   L     +D     
Sbjct: 615  DRIEQPAVVDAVRVLTPAAAAGTAFDTVIVAGVQDGVWPNTRLRGGLLETWRLADAVQFP 674

Query: 673  -----NLKTAEKYI--GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
                  +    +     +        +     +   ++ +++     S   + L      
Sbjct: 675  DLPAAGMLDRRRAAMHDELRLFVRAISRAGERLIVTAVDDDDTG--PSVLFEMLPTPEAA 732

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP----------------KPFPPLEAQPRT 769
                      +  +   R+     + P   R                             
Sbjct: 733  SAIPEHPLSLRGLVARHRRTLTVPRVPAPDRRHAAGQLALLATAGVAGAAPEQWYGVAAP 792

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIP--------HFKKDPDRTDRGTLFHNIITELIK 821
             S + ++ L  +   V   R+  L+              +       GT+ H  +     
Sbjct: 793  SSTAPLRDLAKEDVRVSPSRLHALEECELNWVIADLGGDRSGTTAGIGTIIHAALETAAS 852

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
               +     +     +++     +E                    F        +    I
Sbjct: 853  ASEDDLWAVVEERWGELVFDAAWRERAERTRARDLVRRLATYLRRF------DDAGGRLI 906

Query: 882  FVNIPAKMAIE-----SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936
                  ++ I        G  ++G  DR++L  SG V I D KTG N  +  A+   +PQ
Sbjct: 907  GAERHFEVPIPVDDAGEHGAVVSGDIDRVELTPSGRVVIVDLKTGKNEPQTDAKVADNPQ 966

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L+    A  +G+    +         + L+            +     E  +  ++ +  
Sbjct: 967  LAAYQLAFASGAIENTEGLAPGGAKLLVLRPTAATKDYAEPLQPPFDGEARDAFVERVQR 1026

Query: 997  IVTLLQNGEQP 1007
             V +++ G   
Sbjct: 1027 AVGVMRGGSFA 1037


>gi|292670882|ref|ZP_06604308.1| ATP-dependent deoxyribonuclease subunit B [Selenomonas noxia ATCC
            43541]
 gi|292647503|gb|EFF65475.1| ATP-dependent deoxyribonuclease subunit B [Selenomonas noxia ATCC
            43541]
          Length = 1182

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 115/993 (11%), Positives = 255/993 (25%), Gaps = 144/993 (14%)

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
               +     +  L      G          L         +S+I R + L  ++L    +
Sbjct: 52   ALAQTLTHSAGFL-QAYVFG-FRRLARQVLLETGGAHLSRISDIGRRILLKDILLKHEKE 109

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY--GMW 180
            L    + +                   + L   I  ++      + L    ++       
Sbjct: 110  LSVFARSVGKR-------------GFTETLGHTIAELKRYRLSTDVLRTAADDDAHTQGR 156

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
                   L +     + R+      +    ++  + A+ +         I + G     P
Sbjct: 157  LSKKLRELALIMDDLSARME--GRLTDQTDRMERLAAQLKDAPFLRGAEIWVDGFDFFNP 214

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                +   + +  +   +   +D          +        +     S     SL KLL
Sbjct: 215  QEMAVFVELFHTADTVHISLTMD-GQREGGRVRVNLPENTRDTGLFARSYQTMQSLTKLL 273

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
              +D                     +  +       S       L   +       + + 
Sbjct: 274  VEMD-------------PAAVPEIHLTEEQQRAQKPSLAAIEGHLFGHVRLAPIADNALK 320

Query: 361  LIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDIS 416
            L+EA N R EA ++A  +     E     ++ A++  D +     +       GI   + 
Sbjct: 321  LVEAANPRLEAEAVASDILRLAREEGYRYREIAVLVRDMDTYADLLLPAFADCGIPCHLD 380

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE--------KYLSRAK 468
            A  P +    + +L +     ++   +  +   ++                       A 
Sbjct: 381  AKRPSTHHPLAELLRAAAQTAWRGWGYDTVFRALRTGFFPVVTEPTDDGGFSCGDWQEAV 440

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
            + LE   L    +S +             T   +       + +   ++     +   I 
Sbjct: 441  DRLENYCLAFGIHSENQWTATEDWDFVRRTIPEDARETEQ-NAMRIAEEIALDDIRRRIA 499

Query: 529  QCITPLVTYKTNKNSTCGNLSIS-------DWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
              ++ L      +       + +             +         E R        +  
Sbjct: 500  APLSLLTQNLRREGCLAQERAHALYKFLTKLEAPQKLEMWSAEADAEGRLADAAAHRQIW 559

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
             +  +L  +++E       +A ++ +++   +D   +         + I    ++ L   
Sbjct: 560  ASCMTLLEQLVEVSGDENLSARDFEELLQDGLDALEIALIPPGLDHVTIAAFDQNSLAGI 619

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT-----------AEKYIGQAAHDFEM 690
                + G N G  P+   +   LS   +  +                E+   +    +  
Sbjct: 620  RAAYIIGANAGTMPRAGVQQGVLSDADRLSIRESLAHTNHTIFGGGHEQSFLERYQLYRG 679

Query: 691  ANGTRH-LIYTRSLRE-NNIPTIASRWLQRLL---------------------------- 720
                R  L  + +L   +      S  + RL                             
Sbjct: 680  FTEAREYLWVSYALSSADGAALAPSPLITRLRVICPTVLSIPLAMVERTDDLVLSAPHPV 739

Query: 721  VLGGTDFFDNLKKRGQCYLDW--------------------TRKLDYTTKQPHYKRPKPF 760
            +          K+RG     W                     R L  + ++         
Sbjct: 740  LSLLAGALLGQKERGIMLPLWSDVYNWMRSNAVMHPLLRLMVRGLVSSPREEEQLSLATA 799

Query: 761  PPLEAQPRTY--SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
              L A+      S + ++     P+  +A   L L        +    D GTL H I+  
Sbjct: 800  KQLFARDGRISGSTTRLETFRQCPFRHFAMYGLGLKERD--VYEFQSNDFGTLLHEILHG 857

Query: 819  LIKKRINK-------NTPEINHLMKQIIDSHFEKENLPPHI-DIIWRHLFHKI---SHSF 867
              +    K         P+    + +++     +      I    +RH   +I   +   
Sbjct: 858  YGEWVRTKHANDWCAAEPDSAAKIDELMHEVIPRIRSSVLISRASYRHRIERIRRTAQQV 917

Query: 868  LEHE--EKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGFADRIDLL-KSGFV 913
            + H       SS   +   I     ++              + L G  DR D+     + 
Sbjct: 918  IRHLTSWAKASSFHPLGFEISFGRDMDDVRLEEFQLAGGATLSLRGQIDRFDVTKARDYY 977

Query: 914  DITDYKTGDNP-KKETAQKLIDPQLSLEAAALK 945
             + DYKTG         +  +  QL L    ++
Sbjct: 978  LVLDYKTGGTSLLLPEIRHGLKMQLLLYLFVIR 1010


>gi|199598403|ref|ZP_03211822.1| ATP-dependent nuclease, subunit B [Lactobacillus rhamnosus HN001]
 gi|258508492|ref|YP_003171243.1| ATP-dependent nuclease subunit B [Lactobacillus rhamnosus GG]
 gi|199590722|gb|EDY98809.1| ATP-dependent nuclease, subunit B [Lactobacillus rhamnosus HN001]
 gi|257148419|emb|CAR87392.1| ATP-dependent nuclease, subunit B [Lactobacillus rhamnosus GG]
 gi|259649802|dbj|BAI41964.1| ATP-dependent exonuclease subunit B [Lactobacillus rhamnosus GG]
          Length = 1179

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 113/995 (11%), Positives = 248/995 (24%), Gaps = 134/995 (13%)

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIA 191
            ++ L++    A        LAD +  +       EDL              A    L I 
Sbjct: 111  QADLTIYAGEAQHTGFVTQLADQLSELMIGRITAEDLANTVAALTPGDRHRAKLRDLGII 170

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
               +     E+   +     ++ ++ +A      T   I +        + + L+ T+  
Sbjct: 171  LDQYEA---EIGPYATTASLLSGLQ-QAMRTHDLTHTFIYLNHFNVFSASESALVETMLE 226

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                  +   LD   PT            +  +    +    + L +    + +     +
Sbjct: 227  TAAEVTIGLVLDRPYPTTP---------PVAPNLFLPAGRLYHRLYQKAKTMRVPIRLDQ 277

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                       +   +S        S  +    +E +          V L  A +  +E 
Sbjct: 278  F---------AQPRHLSLGMRRV-ASWWQANTNIEPQPTPPANVADQVRLATATDPYQEL 327

Query: 372  ISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
              +A ++  ++    +      L       A  +      F I        P+       
Sbjct: 328  RHVAQSIYQAVRNGARYRDFVILARRLDPYATIIPAIFAEFQIPQFTDLQRPMKDHPLVV 387

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            ++ SL         +  I  L+   L             A + L+   +R          
Sbjct: 388  LIESLFAIQDHDYQYQDIMRLLHTELLLPQEMTVADYRDAVDTLDNHLVRTGIAGKKRWT 447

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY---KTNKNST 544
                          +      ++  + +   +  L+   +   +              S 
Sbjct: 448  QTEPWRYFQRNPAADETEMDPEADKTAQINAIKTLVAQTVPALLKQWQAAKTGLEAARSL 507

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               L+ +          +               E+   T ++L    +      K N  +
Sbjct: 508  YHWLTKTGVVDQLNAWREAASAAGELARSRA-HEQAWTTFTALLDDYVTILGNAKFNREQ 566

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            + +++       T          + I  T   RL     + + G      P     +  L
Sbjct: 567  FHELLAAGFASATYTQIPATLDAVVISETGLVRLAKAKHIFVIGATSTAMPDVPNDDGVL 626

Query: 665  SRVMQSDLNLKTAEKY-----------------------------------------IGQ 683
            +   +  L  +  +                                             Q
Sbjct: 627  NSEERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASETLTLSYPMQNPQENSENQ 686

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIAS-----RWLQRLLVLGGTDFFDNLKKRGQCY 738
            A+  F+      HL+           T+ S     R +    +    D     +     +
Sbjct: 687  ASPYFQQLKRALHLVPETWAPVTLATTVKSVLGSPRAMLSDFIRAAGDAQQQKQPLSLAW 746

Query: 739  LDWTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPY 783
                  L  T      +R               P+    L  +    S S ++    + +
Sbjct: 747  QSVLSALKQTDLANLAQRLAGSLTYQNDPGRLDPQLAVQLYGRDMNVSVSRLETYYLNHF 806

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-------NTPEINHLMK 836
              + +  L L   P F+      D G+LFH ++   +    ++       +   I   + 
Sbjct: 807  EYFLKYGLLLQPRPEFE--LSPADTGSLFHAVLDRYLTHLRDQQQNLADVDPAAIMTAVP 864

Query: 837  QIIDSHFEK---ENLPPHIDIIWRH-LFHKISHSFLE--HEEKIQSSIEKIFVNIPA--- 887
             ++    ++   E L     + +      ++    L    +++ +S    +   +     
Sbjct: 865  PMVAEIAKQPGYEILGSTYRMTYLTKRLSRLLIQVLLNMRQQQQRSGFRPVRTELQFGRI 924

Query: 888  ---------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYKTGDNP-KKETAQKLI 933
                        +   G +++ G  DR+D+ +        I DYK+G        A   I
Sbjct: 925  GDTKGLPGLSWPLPHGGRVNVRGKIDRLDIYREPDARRFIIVDYKSGQRRFDDSDAYYGI 984

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE------LS 987
              Q+     A+   +         A   Y  L+          +              L 
Sbjct: 985  ALQMLTYIEAMTNVTAE--PPFVPAGALYFHLQDPKLKYTPELEPALERLKAFKYLGFLV 1042

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022
             +    L   V    + E    S +         S
Sbjct: 1043 AEHGDEL-AAVDRTISPESGGRSEIAPLGFKKDGS 1076


>gi|254557327|ref|YP_003063744.1| ATP-dependent nuclease, subunit B [Lactobacillus plantarum JDM1]
 gi|254046254|gb|ACT63047.1| ATP-dependent nuclease, subunit B [Lactobacillus plantarum JDM1]
          Length = 1201

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 108/1003 (10%), Positives = 278/1003 (27%), Gaps = 165/1003 (16%)

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
            P +S     + L R++    ++L     ++                     LA  I+ ++
Sbjct: 92   PRLSAAGIDMLLYRILQRHADELRLFGGEISQT-------------GFVTQLAREINELQ 138

Query: 161  TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
            T   + ED+  L               L I  K +     +     P    + L      
Sbjct: 139  TANLQPEDVVQLAANAQVGDLQAKLHDLAIVYKDFVAATADKYLK-PADILVQLNAYLRH 197

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              + GT   + +AG          +++T+     GA V   L           +     N
Sbjct: 198  QDLHGTHVYVELAGFAQLPAQEQGIITTM--LEQGADVTISLMLD-----HKVVDRAPEN 250

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
             T    +   + +      +  + + ++    +   +  +    + +   +     +   
Sbjct: 251  GTLFYQSGRLYYRLYQYARIRRIPVSQD----IYADTPRVAPGLVALDDFWRGQPQAATG 306

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---------SLDENKKKSAL 391
            + +             ++V L   D+ + E   +   +R          + D + +   +
Sbjct: 307  HEEPN-----------TNVHLFRTDSRQTELAQVGRMIRAMVAKKHANPADDYHYRDFLI 355

Query: 392  ITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            +T   +  + +         I   +     ++      ++ +L +   +   +  +  ++
Sbjct: 356  MTRHLDAYQTMLAPTFHELEIPYFVDLQRSMADHPLVELINALFDIDAQQYQYRDVMRVL 415

Query: 451  KHPLA-----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
            K  L            +   +A +  E   L+   +    +  +     ++ T+ +    
Sbjct: 416  KTELLMPNINGQPMDRQAYRQAVDLTENFILKSGYHGQRWVQREDWQYFQL-TEGDAGVE 474

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI--SDWTKLTVTCLQN 563
                + +S +   +   + + +      +      K +    ++   S      +   ++
Sbjct: 475  TDQNAEISRQINLIHHFVAETLPPFFKKMRQAPDGKAAVTLLVNFLTSQGVTDQLLAWRD 534

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
              LD          E+  +T   +  + +           +++ ++    +G +      
Sbjct: 535  QALDRQDVRAAAEPEQTWQTFCGMLDEYVTILGAEPFEITDFLALLQAGFEGASYSQIPS 594

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR----VMQSDLNLKTAEK 679
                + I  +   +  +   + + G  + V P     N  LS      +Q  L+    + 
Sbjct: 595  TLDQVLISESGMVQSQDHKVVFMVGATDLVMPDRIMTNNLLSDVDKENLQPTLSSLDGDH 654

Query: 680  YIGQAAH----------DFEMANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGT 725
            Y+  +A                +  RHL ++  L+++    +      R +QR   L   
Sbjct: 655  YLNDSAVVQLGDESCLNYLAFLSARRHLFFSAPLKDDQETDLNWSNYVRRIQRQFNLREH 714

Query: 726  -----------------------------------------DFFDNLKKRGQCYLDWTRK 744
                                                     +      +    ++   ++
Sbjct: 715  TYLGTPDPTNADARPFVGTKRRTISHVIQVYRDVLTTNTDRNRVGAPLQPAPVWVWLRQQ 774

Query: 745  LDYTTKQPHYKR----------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
            L    +     R                P     L       S S++++   + YA + +
Sbjct: 775  LTRDPQFGELARQLMAGLSYRNQPVKLTPASVEALYGHQIYTSISKLEEFYRNQYAYFLK 834

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH-------LMKQIIDS 841
              LKL     F+        G  FH ++  LIK   +   P            ++ +   
Sbjct: 835  YGLKLRERDVFE--LSAASTGEFFHAVLDGLIKALRSDQIPLAQASDQQLGQYLETVTRQ 892

Query: 842  HFEKENL----PPHIDIIWRHLFHKISH--SFLEHEEKIQSSIEKIFVNIPA-------- 887
              ++         +     +          +F    +   S+ E     +          
Sbjct: 893  ILDQPQFTILTSSNRMAYLQRQLINTVRQIAFAIRNQSKLSAAEPKQTEVLFGNVGKEHG 952

Query: 888  ----KMAIESI-GIHLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLS 938
                   I++   +H+ G  DR+D   +       I DYK+  +    + A   +  Q+ 
Sbjct: 953  LKALDFQIDATHSVHVRGKIDRLDQIQVADQSYLGIVDYKSSQHKFDFQEAYYGLAMQML 1012

Query: 939  LEAAALKAGSFS----QIDCRKVANLFYIRLKQKFKIDCITND 977
                A+     +         K+A   Y+ ++           
Sbjct: 1013 TYLDAVLHNEQALVGSDQAAVKLAGALYMHIQNPTLKPKDIQG 1055


>gi|306833180|ref|ZP_07466310.1| ATP-dependent nuclease subunit B [Streptococcus bovis ATCC 700338]
 gi|304424754|gb|EFM27890.1| ATP-dependent nuclease subunit B [Streptococcus bovis ATCC 700338]
          Length = 1080

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 117/962 (12%), Positives = 261/962 (27%), Gaps = 131/962 (13%)

Query: 129  DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188
              + ++ L +           K L D+   ++T      +L  L             + L
Sbjct: 95   SHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLNLAEL-------HSAEKQEDL 147

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP-IIIAGSTGSIPATARLMS 247
                    + L+     +         + EA HL    +   ++I G T        L+S
Sbjct: 148  VKIFLAVNDILLANQYDNQSKIAYFAKQVEAGHLDATLENVSLVIDGFTRFSAEEEYLVS 207

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +       I+      +     +               +     Q SL   L  L  K 
Sbjct: 208  LLEEKCAQVII----GTYSSQKAYRAA-----------FSTGNIYQASL-DFLRGLAAKF 251

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                       +    S    ++F           D   + +          A+ +  N+
Sbjct: 252  H-------AQPQYVESSQKSHEAFSKLSKLFEAKHDFTSSDVTLTADDKKHYAIWDVINQ 304

Query: 368  REEAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424
            +EE   +A A+R  L +  +     ++  D +  R        ++ I         +S  
Sbjct: 305  KEEVEHVAKAIRHKLYQGYRYKDILVLLGDVDSYRLQIGKIFDKYDIPYYFGKAESMSDH 364

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                 + SL            +  L+K  L                       GN    D
Sbjct: 365  PLVHFIDSLERVKRYRFRTEDVVNLLKTGL----------------------YGNFKQED 402

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
            +   +  ++      ++            ++       + + I+  +  L   +  + S+
Sbjct: 403  LDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNRMREQIMTPLLALFKAQKQRGSS 462

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                 ++    + +       +    +      E+  +T + + ++        K +  +
Sbjct: 463  LLEKLMTFLHAIHLPDNLEGMVATFSENEQEKHEQVWRTFTGILTQFQTIFGQEKLSLDD 522

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
             + +I   +     +        + +             +   G+ +  +PK    +  +
Sbjct: 523  CLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNKFVFALGMTQAHFPKIAQNSSLI 582

Query: 665  SRVMQSDLNLKTAE--KYIGQAAH-----DFEMAN----GTRHLIYTRSLRENNIPTIAS 713
            S   ++ +N  T +  ++   +        F   +     T  L+ +     N      S
Sbjct: 583  SDEERAQINESTDDNQRFDIVSRENIKKNHFAALSLFNSATEELVLSLPQIANEAEDTES 642

Query: 714  RWLQRLLVLGGTDFFD----------------NLKKRGQC-------------------Y 738
             +L  L   G                       L  R                      +
Sbjct: 643  SYLTELASFGVPVLAKGRNRLSTDAEDIGNYKALLSRVIEVNRLAIEEERELSKEEQTFW 702

Query: 739  LDWTRKLDYTTKQPHYKRPKP---------------FPPLEAQPRTYSFSEIKQLINDPY 783
                R L         + P                       +P   S S +    N+ Y
Sbjct: 703  SVAVRYLRKKLAAEGIELPLIKDNMQTKTVSADVIEARFPSDEPILLSSSAVTTFYNNQY 762

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI--IDS 841
              + + +L L  +      PD  + GT  H +   ++K   N +         Q   ++ 
Sbjct: 763  KYFLQYVLGLQEVETIH--PDARNHGTYLHRVFELVMKDDSNHSFDSKLDKAIQTTNLED 820

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
             F+              +   I+ S         + I+        ++ I    + + G 
Sbjct: 821  DFKFVYEEDEESRYSLTVLEDIARSTATILRDD-AQIQVESEEETFELMIA-NSVRIRGI 878

Query: 902  ADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
             DR+D L  G + I DYK+  N    +     + PQL     AL+       +   +   
Sbjct: 879  IDRVDRLSDGSLGIVDYKSSRNTFDIQKFYNGLSPQLVTYVQALRDKKGLS-ESEHIFGA 937

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
             Y+ +++           +K   +   E + + L          E+ ++++ R     ++
Sbjct: 938  MYLHMQEPKVDLSSVATTEKILENLAKELTYRGL------FLEDEKAYLANGRYHLNDSL 991

Query: 1021 QS 1022
             S
Sbjct: 992  YS 993


>gi|258539703|ref|YP_003174202.1| ATP-dependent nuclease subunit B [Lactobacillus rhamnosus Lc 705]
 gi|257151379|emb|CAR90351.1| ATP-dependent nuclease, subunit B [Lactobacillus rhamnosus Lc 705]
          Length = 1179

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 112/995 (11%), Positives = 242/995 (24%), Gaps = 134/995 (13%)

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIA 191
            ++ L++    A        LA  +  +       EDL              A    L I 
Sbjct: 111  QADLTIYAGEAQHTGFVTQLAGQLSELMIGRITAEDLANTVAALTPGDRHRAKLRDLGII 170

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
               +     E+   +     ++ ++ +A      T   I +        + + L+ T+  
Sbjct: 171  LDQYEA---EIGPYATTASLLSGLQ-QAMRTHDLTHTFIYLNHFNVFSASESALVETMLE 226

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                  +   LD   PTA           +  +    +    + L +    + I     +
Sbjct: 227  TAAEVTIGLVLDRPYPTAP---------PVAPNLFLPAGRLYHRLYQKAKTMRIPIRLDR 277

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                       +   +S        S  +    +E +          V L  A +  +E 
Sbjct: 278  F---------AQPRHLSLGMRQV-ASWWQANTNIEPQPAPTANVADHVHLATATDPYQEL 327

Query: 372  ISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
              +A ++  ++    +      +       A  +      F I        P+       
Sbjct: 328  RHVAQSIYQAVRNGARYRDFVIIARRLDPYATIIPAIFAEFQIPQFTDLQRPMKDHPLVV 387

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            ++ SL         +  I  L+   L    G        A + L+   +R          
Sbjct: 388  LIESLFAIQDHDYQYQDIMRLLHTELLLPQGMAVADFRDAVDTLDNHLVRTGIAGKRRWT 447

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                          +      ++  + +   +  L+   +   +      KT   +    
Sbjct: 448  QTEPWRYFQRNPAADETEMDPEADKTAQINAIKTLVAQTVPALLKQWQAAKTGLEAARSL 507

Query: 548  LSIS---DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                             +               E+   T ++L    +      K N  +
Sbjct: 508  YHWLTKIGVVDQLNAWREAASAAGELARSRA-HEQAWTTFTALLDDYVTILGNAKFNREQ 566

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            + +++       T          + I  T   RL     + + G      P     +  L
Sbjct: 567  FHELLAAGFASATYTQIPATLDAVVISETGLVRLAKAKHVFVIGATSTAMPDVPNDDGVL 626

Query: 665  SRVMQSDLNLKTAEKY-----------------------------------------IGQ 683
            +   +  L  +  +                                             Q
Sbjct: 627  NSEERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASETLTLSYPMQNPQENSENQ 686

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIAS-----RWLQRLLVLGGTDFFDNLKKRGQCY 738
            A+  F+      HL+           T+ S     R +    +    D     +     +
Sbjct: 687  ASPYFQQLKRALHLVPETWAPVTLATTVKSVLGSPRAMLSDFIRAAGDAQQQKQPLSLAW 746

Query: 739  LDWTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPY 783
                  L  T      +R               P+    L  +    S S ++    + +
Sbjct: 747  QSVLSALKQTDLANLAQRLAGSLTYQNDPGRLDPQLAVQLYGRDMNVSVSRLETYYLNHF 806

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK---NTPEINHLMKQIID 840
              + +  L L   P F+      D G+LFH ++   + +  ++           +   + 
Sbjct: 807  EYFLKYGLLLQPRPEFE--LSPADTGSLFHAVLDRYLTQLRDQQQNLADVEPAAIMAAVP 864

Query: 841  SHFEKENLPPH--------IDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA--- 887
                +    P                   ++    L    +++ +S    +   +     
Sbjct: 865  PMVAEIAKQPGYEILGSTYRMTYLTKRLSRLLIQVLLNMRQQQQRSGFRPVRTELQFGRI 924

Query: 888  ---------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYKTGDNP-KKETAQKLI 933
                        +   G +++ G  DR+D+ +        I DYK+G        A   I
Sbjct: 925  GDTKGLPGLSWPLPHGGRVNVHGKIDRLDIYREPDARRFIIVDYKSGQRRFDDSDAYYGI 984

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE------LS 987
              Q+     A+   +         A   Y  L+          +              L 
Sbjct: 985  ALQMLTYIEAMTNVTAE--PPFVPAGALYFHLQDPKLKYTPELEPALERLKAFKYLGFLV 1042

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022
             +    L   V    + E    S +         S
Sbjct: 1043 AEHGDEL-AAVDRTISPESGGRSEIAPLGFKKDGS 1076


>gi|229552294|ref|ZP_04441019.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus rhamnosus
            LMS2-1]
 gi|229314366|gb|EEN80339.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus rhamnosus
            LMS2-1]
          Length = 1179

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 112/995 (11%), Positives = 242/995 (24%), Gaps = 134/995 (13%)

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIA 191
            ++ L++    A        LA  +  +       EDL              A    L I 
Sbjct: 111  QADLTIYAGEAQHTGFVTQLAGQLSELMIGRITAEDLANTVAALTPGDRHRAKLRDLGII 170

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
               +     E+   +     ++ ++ +A      T   I +        + + L+ T+  
Sbjct: 171  LDQYEA---EIGPYATTASLLSGLQ-QAMRTHDLTHTFIYLNHFNVFSASESALVETMLE 226

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                  +   LD   PTA           +  +    +    + L +    + I     +
Sbjct: 227  TAAEVTIGLVLDRPYPTAP---------PVAPNLFLPAGRLYHRLYQKAKTMRIPIRLDR 277

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                       +   +S        S  +    +E +          V L  A +  +E 
Sbjct: 278  F---------AQPRHLSLGMRQV-ASWWQANTNIEPQPAPTANVADHVHLATATDPYQEL 327

Query: 372  ISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
              +A ++  ++    +      +       A  +      F I        P+       
Sbjct: 328  RHVAQSIYQAVRNGARYRDFVIIARRLDPYATIIPAIFAEFQIPQFTDLQRPMKDHPLVV 387

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            ++ SL         +  I  L+   L    G        A + L+   +R          
Sbjct: 388  LIESLFAIQDHDYQYQDIMRLLHTELLLPQGMAVADFRDAVDTLDNHLVRTGIAGKRRWT 447

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                          +      ++  + +   +  L+   +   +      KT   +    
Sbjct: 448  QTEPWRYFQRNPAADETEMDPEADKTAQINAIKTLVAQTVPALLKQWQAAKTGLEAARSL 507

Query: 548  LSIS---DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                             +               E+   T ++L    +      K N  +
Sbjct: 508  YHWLTKIGVVDQLNAWREAASAAGELARSRA-HEQAWTTFTALLDDYVTILGNAKFNREQ 566

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            + +++       T          + I  T   RL     + + G      P     +  L
Sbjct: 567  FHELLAAGFASATYTQIPATLDAVVISETGLVRLAKAKHVFVIGATSTAMPDVPNDDGVL 626

Query: 665  SRVMQSDLNLKTAEKY-----------------------------------------IGQ 683
            +   +  L  +  +                                             Q
Sbjct: 627  NSEERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASETLTLSYPMQNPQENSENQ 686

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIAS-----RWLQRLLVLGGTDFFDNLKKRGQCY 738
            A+  F+      HL+           T+ S     R +    +    D     +     +
Sbjct: 687  ASPYFQQLKRALHLVPETWAPVTLATTVKSVLGSPRAMLSDFIRAAGDAQQQKQPLSLAW 746

Query: 739  LDWTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPY 783
                  L  T      +R               P+    L  +    S S ++    + +
Sbjct: 747  QSVLNALKQTDLANLAQRLAGSLTYQNDPGRLDPQLAVQLYGRDMNVSVSRLETYYLNHF 806

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK---NTPEINHLMKQIID 840
              + +  L L   P F+      D G+LFH ++   + +  ++           +   + 
Sbjct: 807  EYFLKYGLLLQPRPEFE--LSPADTGSLFHAVLDRYLTQLRDQQQNLADVEPAAIMAAVP 864

Query: 841  SHFEKENLPPH--------IDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA--- 887
                +    P                   ++    L    +++ +S    +   +     
Sbjct: 865  PMVAEIAKQPGYEILGSTYRMTYLTKRLSRLLIQVLLNMRQQQQRSGFRPVRTELQFGRI 924

Query: 888  ---------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYKTGDNP-KKETAQKLI 933
                        +   G +++ G  DR+D+ +        I DYK+G        A   I
Sbjct: 925  GDTKGLPGLSWPLPHGGRVNVHGKIDRLDIYREPDARRFIIVDYKSGQRRFDDSDAYYGI 984

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE------LS 987
              Q+     A+   +         A   Y  L+          +              L 
Sbjct: 985  ALQMLTYIEAMTNVTAE--PPFVPAGALYFHLQDPKLKYTPELEPALERLKAFKYLGFLV 1042

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022
             +    L   V    + E    S +         S
Sbjct: 1043 AEHGDEL-AAVDRTISPESGGRSEIAPLGFKKDGS 1076


>gi|295132149|ref|YP_003582825.1| hypothetical protein ZPR_0269 [Zunongwangia profunda SM-A87]
 gi|294980164|gb|ADF50629.1| conserved hypothetical protein [Zunongwangia profunda SM-A87]
          Length = 913

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 146/445 (32%), Gaps = 43/445 (9%)

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            +     +    ++  +++  +      L ++G LESR L+F+ +I+  +NEG  P   + 
Sbjct: 472  SLTALRNFYNEIMSTQSLDFQGRPFKGLQLMGMLESRALDFENVIITSVNEGTLPSGKSN 531

Query: 661  NPFLSRVMQSDLNLKT-AEKYIGQAAHDFEMANGTRHLIYTRSLRENN-IPTIASRWLQR 718
            N F+   ++   NL T  EK      H + +      +    +           SR+L +
Sbjct: 532  NSFIPYDLKKSYNLPTYREKDAVYTYHFYRLLQRATKVTLLYNTESGGLNSGEKSRFLTQ 591

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            L +    +    +            +L    K             +     +S S +   
Sbjct: 592  LEIEKQPNHLLKINTVSPKVPKVNNEL----KVIGKTPAMIEKLKDLANYGFSPSALTSY 647

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-----PEINH 833
            I +P   Y + +L +      ++       GT+ H+ +    K    +        +   
Sbjct: 648  IRNPLDFYYQYVLGVKEEEEVEETVAYNTLGTVIHDSLEVFYKPLEGELLKEIHILDFRK 707

Query: 834  LMKQIIDSHF----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI---- 885
             + Q + + F     K  +    + +   +  +   +FL+ E       E I +      
Sbjct: 708  RIDQEVSTQFYKSYTKSPILQGKNYLIFEIAKRYLSNFLDLENDRLKKGEAIRIEKIEKN 767

Query: 886  -PAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYKTGDNPKKE-------TAQKLIDP 935
              +K+ I S+     + G  DR++   +G   I DYKTG   + +             D 
Sbjct: 768  LKSKINISSLDFPVYIRGKVDRVE-NCNGITRIIDYKTGKVEQSKIEIVDWENITTDYDK 826

Query: 936  -----QLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
                 Q+   A  +K      I    +   + +  LK            +  S D    +
Sbjct: 827  YSKSFQVLAYATMMKNE--ENIPLPLEGGIISFKNLKAGLLKFAKREKPRGGSKDFSINE 884

Query: 990  -----SLKNLIEIVTLLQNGEQPFI 1009
                     L +++T + N   PF 
Sbjct: 885  DTFLAYEDQLEKLITEICNPAIPFT 909



 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/437 (13%), Positives = 116/437 (26%), Gaps = 94/437 (21%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            ++ +   +P+KRA   L +E  ++T   +   P I S+ +  EE               
Sbjct: 18  PISDLVFILPSKRAGAFLLNELSQLT-SSTIFAPKIYSIEEFTEEVSGL---------KS 67

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           + N   L E   +                  +P     S    +  A++L    + I+  
Sbjct: 68  IDNTTTLFEFYEVYQKL--------------TPKEELESFETFLAWAQSLIHDFNEIDRY 113

Query: 163 EKKWED-LHALKNEKYGMWWLL---------AADF---LKIASKYWTERLVELNASSPVG 209
               E   + L + +    W              F   L        E L E        
Sbjct: 114 LIDAEKFFNYLADIQDINHWSKQHRTELIENYLKFWDQLPQYYSVLKENLFEKEQGYQGL 173

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
              +     A +  K +    +  G      A   +   +    N A V   +D      
Sbjct: 174 IYRSAASKVAVYASKNSNQEYVFLGFNALNSAEQVIFQELLQQ-NLAKVFWDIDNVFLKD 232

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             +  +            Y  +P +                                   
Sbjct: 233 YHHEASLFIREYLKDWPFYKENPFH----------------------------------- 257

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
                             +I   ++   D+++        +A  +A  L    +   +K+
Sbjct: 258 -----------------PEIEEYREA-KDISITGIPKNIGQAKYLAELLANKSEAELEKT 299

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF---KLNDFMAI 446
           A++  D +L   +   L     +++I+ G PL     +S+  SL +          +  +
Sbjct: 300 AIVLGDESLLLPILNSLPPNVKDLNITMGFPLKNAPVTSLFNSLFDLHTKSGSSYYYKNV 359

Query: 447 ATLVKHPLAKFGFPEKY 463
             ++ HP          
Sbjct: 360 IAIINHPSLHQILKPYA 376


>gi|223042890|ref|ZP_03612938.1| ATP-dependent nuclease subunit B [Staphylococcus capitis SK14]
 gi|222443744|gb|EEE49841.1| ATP-dependent nuclease subunit B [Staphylococcus capitis SK14]
          Length = 1155

 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 121/958 (12%), Positives = 272/958 (28%), Gaps = 135/958 (14%)

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIA 191
            +S L L  S +     ++ LA+ I   +      + L     E           + + + 
Sbjct: 104  DSELKLYRSQSKYYGFSEKLAEQIQDFKKYSVTPDHLDQFITEHQLQTRTQHKLEDITLI 163

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             K    R+     ++    +  + +      +K  +  I I G         R++  +  
Sbjct: 164  YKELESRMSGEFITTEDSLERFIDQMSKSEWLK--RAEIFIDGFYNFSTLEYRIIEALVQ 221

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
            H     VL   D +              ++    +   TH +    +L   L+      K
Sbjct: 222  HAKSVTVLLTTDGNQDP----------FSLFRKPSEVLTHLEDIANQLNIHLNKTLFQQK 271

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                  +  +  S   +    P   S                   + V ++E+ N REE 
Sbjct: 272  FRFENDDLKHLESDFDALQMTPQSHS-------------------NHVEILESSNMREEV 312

Query: 372  ISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
              +A  +   + ++    +  A++  D + A   +   + + I  +I     +S      
Sbjct: 313  NELARRIIRDVRDHHLRFQDIAILYRDESYAYLFESIFSLYDIPFNIDTKKSMSHHPIME 372

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            ++ SL+  I    +  A+  L K  +    F         + LE  AL         +D 
Sbjct: 373  MIRSLIEVIQSNWNINAMLRLFKTNVLTSQFKNSSYL--IDLLENFALERGVYGKRWLDE 430

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELA-VLLVDHILQ---CITPLVTYKTNKNST 544
            +   +D+       +H    Q + + E+  L    ++D +L     ++   T +    + 
Sbjct: 431  EVFHVDQFNKMGRKSHALTPQEKETYEEVVLLKNHVIDKVLYFEKAMSDATTVRDFATAF 490

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
              ++   +     +T    +   E +       ++       +   ++      +    +
Sbjct: 491  YESMEYFELPNQLMTERDEL-DVEGKHQQAEEIDQIWNGFIQILDDLVTVFDTQEMTLKQ 549

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            ++++    ++        +    + I     +++ N   + + G+N+G  P+  + +  +
Sbjct: 550  FLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKRHIYMVGMNDGSLPQPVSSSSLI 609

Query: 665  SRVMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSLRENNI-PTIASR 714
            +   +             T++      A      M      + ++ SL  N+      S 
Sbjct: 610  TDEEKKYFEQNAQIELSPTSDILQMDEAFVCYIAMTRAREKVTFSYSLMGNSGDEKEISP 669

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYL----------------DWTRKLD-YTTKQPHYKRP 757
            +L ++  L       N+++  +                        LD            
Sbjct: 670  FLSQIKDLYHHLDIVNIQQEHEEQPISFMQHVHQTKIELFDALRTWLDHEDVDIRWLDAY 729

Query: 758  KPFPPLEAQPRTY-------------------------------SFSEIKQLINDPYAVY 786
            +     E                                     S S  +     P+  Y
Sbjct: 730  QVIRDDEQLNDGLDYLITSLTYDNETVQLNETLTKQLYGTTINASVSRFEGYQQCPFKHY 789

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            A   L+L+     K +    D G +FH+++  +  +            +K + +   E  
Sbjct: 790  ASHGLRLNERS--KYELQNFDLGDIFHSVLKHISDRVEGDFKNLDRKKIKALTEEALELI 847

Query: 847  NLPPHIDII--------WRHLFHKISHSFLEHEEKI--QSSIEKIFVNIPAK-------- 888
                  +++               I  + L   +     S           +        
Sbjct: 848  LPKVQFNLLNSTAYYKYLSRRIGSIVETTLNALKYQTGFSKFIPQRFETGFRKSPRNKDE 907

Query: 889  ------MAIESIGIHLTGFADRIDLL--KSGFVD-ITDYK--TGDNP-KKETAQKLIDPQ 936
                     + I I++ G  DRID           I DYK  TG            +  Q
Sbjct: 908  LVAQPLHTKQGIPINIRGQIDRIDTYTKGDHSYVNIIDYKSSTGSATLDLTKVYYGLQMQ 967

Query: 937  LSLEAAALKAGS--FSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSL 991
            +      +          D  K   L Y  + + + K D  +   +     EL +   
Sbjct: 968  MMTYMDIVLQNKDRLELTDIVKPGGLLYFHVHEPRIKFDNWSKIDEDKLNKELIKSFK 1025


>gi|322411490|gb|EFY02398.1| ATP-dependent nuclease subunit B [Streptococcus dysgalactiae subsp.
            dysgalactiae ATCC 27957]
          Length = 1074

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 129/988 (13%), Positives = 270/988 (27%), Gaps = 139/988 (14%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P     +     +     K L D+   ++T  
Sbjct: 75   SESKQALDETALAMIFYRVLMQLTPEDLP-----VYGRLKDDPAFIKQLIDLYQELKTAN 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                +L  L             D ++I S        +           A   A  +   
Sbjct: 130  LSVYELTELDTP------GKQEDLIRIISLAEELMTQQDYHQDSALMSFAKTIATGQLDE 183

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            + +K  ++I G +        L+S + +     ++   +        +    + +    S
Sbjct: 184  QLSKTVLVIDGFSRFSAEEDYLLSLLNSKCQEIVIGSYISQKSYQKPF---IKGNIYEAS 240

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                     QY    +            +   V    + R   + ++       D +  +
Sbjct: 241  IQFLQGLAEQYETKPI----------YSQSEKVFAPSFSRVTQLFEAHHDFSQVDWQLEE 290

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADRNLAR 400
              +           D+ + ++  ++EE   +A A+R  L E  +      L+        
Sbjct: 291  KDK----------EDIHIWQSHQQKEEIEHVAKAIREKLYEGYRYKDMLVLLGDVDAYQL 340

Query: 401  RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            ++     +F I   +     ++       + SL  +         I  L+K  L      
Sbjct: 341  QIGPIFDKFEIPYYLGKAESMTAHPLVQFIESLERSQRYNWRREDILNLLKSGLFGSFAD 400

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                      D+                       ++       
Sbjct: 401  -------------------------SDVDRFEEYLQFADIKGFTKFSRPFTINSSRHYPL 435

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT--VTCLQNVCLDEHRKLPNLWFE 578
             LL +      +PL     ++     +L +         V   +N+      +L     E
Sbjct: 436  ELLNEIREAIFSPLQALFKSQKQLGTSL-LDKLMTFFKDVQLAENMKNLGQNELETEKNE 494

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            E  KT + + +   +T    K    + + +I   +     +        + I      + 
Sbjct: 495  EVWKTFTDVLTSFYQTFGQEKLKLADCLSLIKMGMQSAHYRIVPATLDVVSIKSYDLVQP 554

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------NLKTAEKYIGQAAH 686
             +   +   GL +  +PK   +   LS   ++ +                  +   Q A 
Sbjct: 555  HSKPFVYAIGLTQSHFPKQVKETGLLSDQERARINEITDSFQHFDIGSIENSRKNHQTAL 614

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725
                A  T+ L+ +     N      S +L+ L+  G                       
Sbjct: 615  SLLNA-ATQELVLSVPALVNEFSDDLSPYLKELMSFGLPLIDKGSNRFSYAASDIGNYKA 673

Query: 726  -----------DFFDNLKKRG-----QCYLDWTRKL-----------DYTTKQPHYKRPK 758
                           ++ ++             R+L           D+   +P      
Sbjct: 674  LLSRLVDLNREAIVADMTEQDKTFWTVALRYLRRQLRHQQVTLPMLDDHLVTKPLASEVI 733

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                   +P   S + +    N+ Y  + + +L L         PD    G   H +   
Sbjct: 734  EARFPSDRPLRLSSTALTVFYNNQYKYFLQYVLGLQEAESIH--PDARIHGQYLHRVFEL 791

Query: 819  LIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
            ++      +              +  F+        +     L   I+ S        Q+
Sbjct: 792  VMTDHTAASFDSKLAQAIHQTNQEKEFQYIYQDSAENRFSLDLLEDIAKSTASILRLNQN 851

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDP 935
             +       P  + +    I + G  DRID L  G + I DYK+  N          + P
Sbjct: 852  -MTVSRQEEPFALQVTDQ-IVVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGKFYNGLSP 909

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            QL    AAL+   F   D   +    Y+ L++                D+L E   K L 
Sbjct: 910  QLVTYLAALQQQ-FGPDDLGHLFGAMYLHLQEPKLDLATVK----ALDDKLVESIYKELT 964

Query: 996  EIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
                +    E+ ++++     ++ I S 
Sbjct: 965  -YKGIFLESEKEYLANGAYQTRNAIYST 991


>gi|291458761|ref|ZP_06598151.1| putative ATP-dependent nuclease subunit B [Oribacterium sp. oral
            taxon 078 str. F0262]
 gi|291418678|gb|EFE92397.1| putative ATP-dependent nuclease subunit B [Oribacterium sp. oral
            taxon 078 str. F0262]
          Length = 1159

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 106/972 (10%), Positives = 236/972 (24%), Gaps = 82/972 (8%)

Query: 112  LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171
            L R+I      +         +  L L  +  +       L   I        + E L  
Sbjct: 84   LPRIIDDTGKVMLLRESSERVKDKLELYKNQLSRPGFLSELKSQISEFYQYRIRPELLED 143

Query: 172  LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231
               +            L +  + + E + E            L+    E         I+
Sbjct: 144  AAEKCSSSHMGAKLRELSLLYRAFLEYMEERGYMVEEELLDRLLSFLPET-KLLDGATIL 202

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
              G TG  P    ++  +       +    L      A++           +  T     
Sbjct: 203  FDGFTGFTPVQLDIIEEMMKSCRSLLFSLCLGRGARGALYGEHRASELFFLTGQTAEKLR 262

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
             +           I       L   +            +                     
Sbjct: 263  LRAEKCSCPILPPIDLNRFDALTGRARNPSHPLPRFQNAPALDYLERSLYRYSAAGTEGR 322

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LELT 407
                   + + EA ++R E   +A  +  ++ E     +  A++ ++    R +      
Sbjct: 323  NFALDGSIEIWEAADQRMEIERLASEIERAVREEGLRYQDIAVLISEPEQYRDLIYRCFL 382

Query: 408  RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH-PLAKFGFPEKYLSR 466
              GI   +     L  +  + +L + +  + +   F ++   ++  P        +    
Sbjct: 383  AAGIPYFLDDPGSLLDSPPAKLLRAAIEVLERAFSFDSVIRCLRALPGRTPEEENEIDLF 442

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                 E           +     SL               + +   +          +  
Sbjct: 443  ENWLRERGIRGAAAYQREWEHFDSLRRKLAGPLLRLLSEGNERGASASRRISALRGFLTE 502

Query: 527  ILQC------ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
            +            L        +      +    +L +   + +      +       + 
Sbjct: 503  LRAREYISKEAERLREIGEQNRAEELLRGMDAVEELLLRFSELLGETRISRREFSELLDA 562

Query: 581  G--KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            G  +    +    ++           +       + G +            ILG  E  L
Sbjct: 563  GLSEASIRIIPATLDQVVIGDLTRSRFSSPKRFFLVGVSAGALPGSGKGTGILGDRERAL 622

Query: 639  LNFDTLILGGLNEGVWPKN----------TAKNPFLSRVMQSDLN--------------- 673
            L   ++ L                      ++   LS  ++                   
Sbjct: 623  LRSLSIELAPDQAEDALLQRFYIYRALLNPSEKLLLSYPLRGRNGKSRKPSPLIEALRGI 682

Query: 674  -------LKTAEKYIGQAAHDFEMANGTR------HLIYTRSLRENNIPTIASRWLQRLL 720
                       E        +   +                +  +        R      
Sbjct: 683  FPGLSIRSLRHEPEEIYTREELLRSLSRTLPLYLEERERKEAREDKGESASEGREAVEAP 742

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP---HYKRPKPFPPLEAQPRTYSFSEIKQ 777
              G      +   R   Y D   KL               +    +  +    S + ++Q
Sbjct: 743  SEGRLLSGFSALLRDPSYRDRASKLLDAAFTSYQSGKLDREIAEEIYGEILYGSITRLEQ 802

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--INKNTPEINHL- 834
                 YA + R  L+L        +    D G L+H  + EL ++     ++ PE++   
Sbjct: 803  YNRCAYAHFLRYGLQLSERK--SNEVRALDLGNLYHLAMEELFRELSKRGQSLPELSREE 860

Query: 835  --------MKQIIDSHFEKENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVN 884
                    + +  + + E+       +        +I  +  +   E+  +      F+ 
Sbjct: 861  ACALSDACVLRASEQYNERMMQDSARNRYLLRRISEICRTTVWALSEQLRRGDFRPAFLE 920

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLE 940
                +     G  L+G  DR+DL ++     V + DYK+G          + +  QL+  
Sbjct: 921  KDFHLTRP--GFRLSGRIDRVDLCETEKSIYVKVLDYKSGRTVFDLNRIYEGLQLQLATY 978

Query: 941  AAALKAGSFSQIDCRKV--ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL---- 994
                          ++V  A +FY R+           D+       L    +  L    
Sbjct: 979  LKVALEELQRDYPGKEVLPAAMFYYRIDDPILDYVPGEDEDGGEDRRLRALRVDGLVNAD 1038

Query: 995  IEIVTLLQNGEQ 1006
             E+++ L    Q
Sbjct: 1039 REVISHLDREFQ 1050


>gi|255323799|ref|ZP_05364925.1| helicase, uvrd/rep family [Corynebacterium tuberculostearicum SK141]
 gi|255298979|gb|EET78270.1| helicase, uvrd/rep family [Corynebacterium tuberculostearicum SK141]
          Length = 1027

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 123/1049 (11%), Positives = 271/1049 (25%), Gaps = 170/1049 (16%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
              ++  R    +P   + + +  P+K +   LR E  E     +    +++S+  +    
Sbjct: 45   HALDKARETGADP---SGILVIAPSKESGARLRRELSERLEDYAAQTSMVRSVHSLAFAL 101

Query: 89   FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
                               RL+  A    + R  L    +D +   P  +       +  
Sbjct: 102  LRTAAEEEL----------RLITGAEQDAVIRELLTGQAEDGHGSWPAEM-RPALEYVGF 150

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
            A+ L D +           DL  L  E     W  A +FL+   +    +L+    S   
Sbjct: 151  ARQLRDFLLRSIERGLGPGDLERLGAEHGRPMWSAAGEFLREYERV---QLLSRAHSYSA 207

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
               +  +    + L +     II+  +    P   +L+  +A  P   +V+ G D     
Sbjct: 208  AELVTAVLQRPQLLREHPFHTIIVDDAQLLDPTAGKLIRDMA--PQADLVVVGGDADQSV 265

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +   + +      ++        +                                  
Sbjct: 266  FAFRGASSRFLRDFPADHDIELTEPHRTPA------------------------------ 295

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
                                  +I      +  + A+  R   +   +  R         
Sbjct: 296  ------------------PACISIVDSDGSLRDVVANTVRRRHLEDGVPWR--------D 329

Query: 389  SALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
             A+I        +++  L   G+ + IS   + L+     S +   L A+ +      + 
Sbjct: 330  IAVIVRSTGDIGQMRRTLLAAGVPVHISPTDVVLAEQRLVSAVLLALRALEEDLSNSELE 389

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             L+  P+                      RG      I  L+ L+   +         P 
Sbjct: 390  ELLTGPVGGADPVTLRRLIRGLRRWDSTTRG------IDSLRGLLYGEL---------PD 434

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
            +  +L+E +  +   +   +      L +  + +       S ++               
Sbjct: 435  FNGQLTEREYSILERVRAVLSAGRDALASGDSVEEVLWAVWSATELDNRLQASALRGGAT 494

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
              +   +L         +  + +     S           I  + +       +      
Sbjct: 495  GSQADRDLDAMMALFDAAGDYVERRPDSSLRAF----LTHITEQELPTGVRDRRTAIPQA 550

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE--------- 678
            + IL    +    +DT+I+ G  EG WP          +    DL     +         
Sbjct: 551  VEILTAHGAVGREWDTVIVAGAQEGSWPSLGETGSIFGQEDLIDLLDHDIDPDTPVSHVA 610

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSL---RENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
              + +    F +A          +     E +  +  SR++      G        +++ 
Sbjct: 611  SRLAEERRLFHVATTRHRQRLLIAAVENPEGDTVSEPSRFISEFAGRGVDVPGQAARRQA 670

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPP----LEAQPRTYSFSEIKQLIN----------- 780
            +  L  T+             P                 S       +            
Sbjct: 671  KRALRRTQLPRELGLDVPEPAPVSLRDGLEVDPLDVAVLSVPAFVAQLRRVVTNPESSEV 730

Query: 781  --------------------DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
                                 P   ++ R +  +   H       +    L +  +  ++
Sbjct: 731  ERKQAARQLARLAAADIPGAHPEQWWSARSVAAEVPLHTSGSLSPSRVEALLNCPLKAVL 790

Query: 821  KKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI-------------- 863
                         +   +         +        ++    F +I              
Sbjct: 791  GNVAEDPSTEEHLLRGTLAHAFFEALGRGMDAEKAKLLVMEAFERIQDVPQWQLRFKLDE 850

Query: 864  ----SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
                     E   + + + E   V IP  + + S  + + G+ DR+   + G   + D K
Sbjct: 851  FSTLLDRAREWACQSEVNQELAGVEIPVGVRV-SEEVRIGGYMDRLLRDEEGNYLVVDLK 909

Query: 920  TGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL---FYIRLKQKFKIDCIT 975
            TG + P K+  +  +  QL     AL  G+F          +     + +        I 
Sbjct: 910  TGRSKPAKKEGEDHV--QLMTYQLALAHGAFDGHQVHDGEGMPRQGGVLVYPGATTKKIG 967

Query: 976  NDKKKYSADELSEKSLKNLIEIVTLLQNG 1004
               +   + E  E+    L  +V  ++  
Sbjct: 968  EIWQSDKSPEALEEFAALLPPLVEEMRGP 996


>gi|300768582|ref|ZP_07078481.1| exonuclease RexB [Lactobacillus plantarum subsp. plantarum ATCC
            14917]
 gi|300493889|gb|EFK29058.1| exonuclease RexB [Lactobacillus plantarum subsp. plantarum ATCC
            14917]
          Length = 1201

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 108/1003 (10%), Positives = 277/1003 (27%), Gaps = 165/1003 (16%)

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
            P +S     + L R++    ++L     ++                     LA  I+ ++
Sbjct: 92   PRLSAAGIDMLLYRILQRHADELRLFGGEISQT-------------GFVTQLAREINELQ 138

Query: 161  TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
            T   + ED+  L               L I  K +     +     P    + L      
Sbjct: 139  TANLQPEDVVQLAANAQAGDLQAKLHDLAIVYKDFVAATADKYLK-PADILVQLNAYLRR 197

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              + GT   + +AG          +++T+     GA V   L           +     N
Sbjct: 198  QDLHGTHVYVELAGFAQLPAQEQGIVTTM--LEQGADVTISLMLD-----HKVVDRAPEN 250

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
             T    +   + +      +  + + ++    +   +  +    + +   +     +   
Sbjct: 251  GTLFYQSGRLYYRLYQYARIRQIPVSQD----IYAETPRVAPGLVALDDFWRGQPQAATG 306

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---------SLDENKKKSAL 391
              +             ++V L   D+ + E   +   +R          + D + +   +
Sbjct: 307  YEEPN-----------TNVHLFRTDSRQTELAQVGRMIRAMVAKKHADPADDYHYRDFLI 355

Query: 392  ITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            +T   +  + +         I   +     ++      ++ +L +   +   +  +  ++
Sbjct: 356  MTRHLDAYQTMLAPTFHELEIPYFVDLQRSMADHPLVELINALFDIDAQQYQYRDVMRVL 415

Query: 451  KHPLA-----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
            K  L            +   +A +  E   L+   +    +  +     ++ T+ +    
Sbjct: 416  KTELLMPNINGQPMDRQAYRQAVDLTENFILKSGYHGQRWVQREDWQYFQL-TEGDAGVE 474

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI--SDWTKLTVTCLQN 563
                + +S +   +   + + +      +      K +    ++   S      +   ++
Sbjct: 475  TDQNAEISRQINLIHHFVAETLPPFFKKMRQAPDGKAAVTLLVNFLTSQGVTDQLLAWRD 534

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
              LD          E+  +T   +  + +           +++ ++    +G +      
Sbjct: 535  QALDRQDVRAAAEPEQTWQTFCGMLDEYVTILGAEPFEITDFLALLQAGFEGASYSQIPS 594

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR----VMQSDLNLKTAEK 679
                + I  +   +  +   + + G  + V P     N  LS      +Q  L+    + 
Sbjct: 595  TLDQVLISESGMVQSQDHKVVFMVGATDLVMPDRIMTNNLLSDVDKENLQPTLSSLDGDH 654

Query: 680  YIGQAAH----------DFEMANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGT 725
            Y+  +A                +  RHL ++  L+++    +      R +QR   L   
Sbjct: 655  YLNDSAVVQLGDESCLNYLAFLSARRHLFFSAPLKDDQETDLNWSNYVRRIQRQFNLREH 714

Query: 726  -----------------------------------------DFFDNLKKRGQCYLDWTRK 744
                                                     +      +    ++   ++
Sbjct: 715  TYLGTPDPTNADARPFVGTKRRTISHVIQVYRDVLTTNTDRNRVGAPLQPAPVWVWLRQQ 774

Query: 745  LDYTTKQPHYKR----------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
            L    +     R                P     L       S S++++   + YA + +
Sbjct: 775  LTRDPQFGELARQLMAGLSYRNQPVKLTPASVEALYGHQIYTSISKLEEFYRNQYAYFLK 834

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH-------LMKQIIDS 841
              LKL     F+        G  FH ++  LIK   +   P            ++ +   
Sbjct: 835  YGLKLRERDVFE--LSAASTGEFFHAVLDGLIKALRSDQIPLAQASDQQLGQYLETVTRQ 892

Query: 842  HFEKENL----PPHIDIIWRHLFHKISH--SFLEHEEKIQSSIEKIFVNIPA-------- 887
              ++         +     +          +F    +   S+ E     +          
Sbjct: 893  ILDQPQFTILTSSNRMAYLQRQLINTVRQIAFAIRNQSKLSAAEPKQTEVLFGNVGKEHG 952

Query: 888  ----KMAIESI-GIHLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLS 938
                   I++   +H+ G  DR+D   +       I DYK+  +    + A   +  Q+ 
Sbjct: 953  LKALDFQIDATHSVHVRGKIDRLDQIQVADQSYLGIVDYKSSQHKFDFQEAYYGLAMQML 1012

Query: 939  LEAAALKAGSFS----QIDCRKVANLFYIRLKQKFKIDCITND 977
                A+     +         K+A   Y+ ++           
Sbjct: 1013 TYLDAVLHNEQALVGSDQAAVKLAGALYMHIQNPTLKPKDIQG 1055


>gi|258593628|emb|CBE69969.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 991

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 112/1011 (11%), Positives = 264/1011 (26%), Gaps = 124/1011 (12%)

Query: 46   SVTIYVPTKRAIQEL--RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
             V     T++A  E+  R + +   G   T    I +     +       L+       +
Sbjct: 66   QVLALTFTEKAAAEMERRVDLLVPYGFTDTW---ISTFHAFGDRVLREHALVLG-----L 117

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S   RLL +   ++ ++  L ++        PL       + +   + L  +    + E+
Sbjct: 118  SPDFRLLTVPEQVIFFQEHLFEL--------PLDYFRPLGSPLRHVQALLQLFSRAKDED 169

Query: 164  KKWEDLHA----------LKNEKYGMWWLLAAD-FLKIASKYWTERLVELNASSPVGYQI 212
               E   +             +   +      +  +    + + E +            +
Sbjct: 170  VGPEQYASYAEELVGRATAAPDDKTLAEQATREMEIARVYRQYQELMAREGKLDFGDLMV 229

Query: 213  ALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
              +    EH      ++     I++     +  A  +++  +        V+   D    
Sbjct: 230  RTLDLLREHPLVLQRLQERFRYILVDEFQDTNYAQFQIVKLLTASHRNVTVV--GDDDQS 287

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               +   +  +          +                   +   L              
Sbjct: 288  IFKFRGASISNILSFRREFPDA-------------------ETIVLAENYRSTSSVLDAA 328

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK- 386
             +     +   +   + ++ ++         V  +     +EEA  +   +   ++    
Sbjct: 329  YRLIQHNNPDRLEYQEGVDKRLKPCNGDGPAVESVVFQTYQEEADWVVEKIEELIEAKAC 388

Query: 387  --KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                 A++    + A  +   L   GI    S    L       ++ S L  +    D +
Sbjct: 389  ALGDIAILVRRNSDADPLLRALNMKGIPWSFSGAKGLYDRDEIRLVISFLRLLADPYDSL 448

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
            ++  L    +      +  L  A    +               L  ++LD          
Sbjct: 449  SLFHLAGSDIYGLPAADLTLCNAHARRKHR------------SLYEVLLDLTRRPGAVPE 496

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
            +    +        L   L  ++ +    +      +             +      + +
Sbjct: 497  LSGVSTEGIAAATALLSDLHRYLDKAAREVTGRILYEF----------LMEQPGYGKRLL 546

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
              +  R    +        L   F ++             ++ ++    +   V      
Sbjct: 547  HSNSSRDHQRISNLAAFFGLVQRFGEVAPQDRVAGFVP--YLTMLIEAGENPPVAEGEAA 604

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
               + +L   +++ L F+ + L GL E  +P    +             L + + +  + 
Sbjct: 605  EEGVAVLTLHKAKGLEFEAVFLVGLVEKRFPSIDRREAIPLPDELIKETLPSGDFHQQEE 664

Query: 685  AHDFE--MANGTRHLIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
               F   M    RHL  TR+           SR+L   L L   +     +   +  +  
Sbjct: 665  RRLFYVGMTRAKRHLFLTRAKDYGTKREWKRSRFLAEALALPREEEEQPWRGTAEAVIGR 724

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                         +   P         + S  +I   +  P       IL++  +     
Sbjct: 725  YAPPPQVAIDLAIRADTPL--------SLSHYQIDDYLTCPLKYKYVHILRVPVLREHT- 775

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI--DIIWRHL 859
                   G   H  +     +R+   T  ++ L+       FE   +             
Sbjct: 776  ----IIYGAALHRAVQAYNTQRLTGQTMSLDDLI-----KSFEAHWVNEGFISREHEERR 826

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
              +   +                V    +  +      +TG  DR+D  + G   I DYK
Sbjct: 827  MQEGRDALTRFHAGAAKGPLPTSVEKRFRFQLGDD--LVTGIMDRVDERE-GETVIIDYK 883

Query: 920  TGDNPKKETA--QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
            +     ++ A  +     QL+L A A +       D  ++  L          +      
Sbjct: 884  SSSVRDQKAADKEARESQQLALYALAYRESIGRLPDRVELHFLT------PGGVIVGQAV 937

Query: 978  KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            KK+   D+  E+              G +  +     S+       +  + 
Sbjct: 938  KKEKDLDQAVERVRAA--------ATGIRAGLFQATPSQWVCSFCAFRTIC 980


>gi|308181396|ref|YP_003925524.1| exonuclease RexB [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308046887|gb|ADN99430.1| exonuclease RexB [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 1201

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 108/1003 (10%), Positives = 277/1003 (27%), Gaps = 165/1003 (16%)

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
            P +S     + L R++    ++L     ++                     LA  I+ ++
Sbjct: 92   PRLSAAGIDMLLYRILQRHADELRLFGGEISQT-------------GFVTQLAREINELQ 138

Query: 161  TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
            T   + ED+  L               L I  K +     +     P    + L      
Sbjct: 139  TANLQPEDVVQLAANAQAGDLQAKLHDLAIVYKDFVAATADKYLK-PADILVQLNAYLRR 197

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              + GT   + +AG          +++T+     GA V   L           +     N
Sbjct: 198  QDLHGTHVYVELAGFAQLPAQEQGIVTTM--LEQGADVTISLMLD-----HKVVDRAPEN 250

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
             T    +   + +      +  + + ++    +   +  +    + +   +     +   
Sbjct: 251  GTLFYQSGRLYYRLYQYARIRQIPVSQD----IYAETPRVAPGLVALDDFWRGQPQAATG 306

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---------SLDENKKKSAL 391
              +             ++V L   D+ + E   +   +R          + D + +   +
Sbjct: 307  YEEPN-----------TNVHLFRTDSRQTELAQVGRMIRAMVAKKHADPADDYHYRDFLI 355

Query: 392  ITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            +T   +  + +         I   +     ++      ++ +L +   +   +  +  ++
Sbjct: 356  MTRHLDAYQTMLAPTFHELEIPYFVDLQRSMADHPLVELINALFDIDAQQYQYRDVMRVL 415

Query: 451  KHPLA-----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
            K  L            +   +A +  E   L+   +    +  +     ++ T+ +    
Sbjct: 416  KTELLMPNINGQPMDRQAYRQAVDLTENFILKSGYHGQRWVQREDWQYFQL-TEGDAGVE 474

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI--SDWTKLTVTCLQN 563
                + +S +   +   + + +      +      K +    ++   S      +   ++
Sbjct: 475  TDQNAEISRQINLIHHFVAETLPPFFKKMRQAPDGKAAVTLLVNFLTSQGVTDQLLAWRD 534

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
              LD          E+  +T   +  + +           +++ ++    +G +      
Sbjct: 535  QALDRQDVRAAAEPEQTWQTFCGMLDEYVTILGAEPFEITDFLALLQAGFEGASYSQIPS 594

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR----VMQSDLNLKTAEK 679
                + I  +   +  +   + + G  + V P     N  LS      +Q  L+    + 
Sbjct: 595  TLDQVLISESGMVQSQDHKVVFMVGATDLVMPDRIMTNNLLSDVDKENLQPTLSSLDGDH 654

Query: 680  YIGQAAH----------DFEMANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGT 725
            Y+  +A                +  RHL ++  L+++    +      R +QR   L   
Sbjct: 655  YLNDSAVVQLGDESCLNYLAFLSARRHLFFSAPLKDDQETDLNWSNYVRRIQRQFNLREH 714

Query: 726  -----------------------------------------DFFDNLKKRGQCYLDWTRK 744
                                                     +      +    ++   ++
Sbjct: 715  TYLGTPDPTNADARPFVGTKRRTISHVIQVYRDVLTTNTDRNRVGAPLQPAPVWVWLRQQ 774

Query: 745  LDYTTKQPHYKR----------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
            L    +     R                P     L       S S++++   + YA + +
Sbjct: 775  LTRDPQFGELARQLMAGLSYRNQPVKLTPASVEALYGYQIYTSISKLEEFYRNQYAYFLK 834

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH-------LMKQIIDS 841
              LKL     F+        G  FH ++  LIK   +   P            ++ +   
Sbjct: 835  YGLKLRERDVFE--LSAASTGEFFHAVLDGLIKALRSDQIPLAQASDQQLGQYLETVTRQ 892

Query: 842  HFEKENL----PPHIDIIWRHLFHKISH--SFLEHEEKIQSSIEKIFVNIPA-------- 887
              ++         +     +          +F    +   S+ E     +          
Sbjct: 893  ILDQPQFTILTSSNRMAYLQRQLINTVRQIAFAIRNQSKLSAAEPKQTEVLFGNVGKEHG 952

Query: 888  ----KMAIESI-GIHLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLS 938
                   I++   +H+ G  DR+D   +       I DYK+  +    + A   +  Q+ 
Sbjct: 953  LKALDFQIDATHSVHVRGKIDRLDQIQVADQSYLGIVDYKSSQHKFDFQEAYYGLAMQML 1012

Query: 939  LEAAALKAGSFS----QIDCRKVANLFYIRLKQKFKIDCITND 977
                A+     +         K+A   Y+ ++           
Sbjct: 1013 TYLDAVLHNEQALVGSDQAAVKLAGALYMHIQNPTLKPKDIQG 1055


>gi|283470165|emb|CAQ49376.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            ST398]
          Length = 1158

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 114/966 (11%), Positives = 271/966 (28%), Gaps = 141/966 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L + + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            N  N    R    ++ +   +          +    N   C   + ++E+   REE   I
Sbjct: 257  NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315

Query: 375  AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            A  + + + +     +  A++  D + A      L  + I  +I     ++      ++ 
Sbjct: 316  ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            SL+  I        +  L+K  +    +     +   + LE   L         +D +  
Sbjct: 376  SLIEVIQSNWQVNPMLRLLKTDVLTTSY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433

Query: 492  VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547
             ++  +      H      R + E   +L   ++D IL     ++   T K    +   +
Sbjct: 434  NIEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYES 493

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +   +     +T    + L+          ++    L  +   ++        +   +++
Sbjct: 494  MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +    ++        +    + I     +++ N   + L G+N+G  P+    +  ++  
Sbjct: 553  VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612

Query: 668  MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717
             +         +L+  +    + +A   +      +  + ++ SL   +      S +L 
Sbjct: 613  EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLN 672

Query: 718  RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758
            ++  L       N+ +                     +    W              +  
Sbjct: 673  QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732

Query: 759  PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789
                                                +    S S  +     P+  YA  
Sbjct: 733  RDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848
             LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+    
Sbjct: 793  GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850

Query: 849  -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888
                                 I  + L   +     S           +           
Sbjct: 851  VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910

Query: 889  ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939
                  + I I++ G  DRID   K+    V+I DYK+  G            +  Q+  
Sbjct: 911  QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970

Query: 940  EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994
                +    +    + I   K   L Y  + + + K     +  +     +L +K    L
Sbjct: 971  YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026

Query: 995  IEIVTL 1000
              +V  
Sbjct: 1027 SGLVNA 1032


>gi|258648077|ref|ZP_05735546.1| conserved hypothetical protein [Prevotella tannerae ATCC 51259]
 gi|260851938|gb|EEX71807.1| conserved hypothetical protein [Prevotella tannerae ATCC 51259]
          Length = 905

 Score =  175 bits (442), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 80/469 (17%), Positives = 158/469 (33%), Gaps = 43/469 (9%)

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                +         +I RL    ++    E    L ++G LE+R L+F+ ++L   NEG+
Sbjct: 438  ESGMLTVTPPTLHRLIRRLAAQASIPFHGEPVVGLQLMGILETRNLDFENILLLSTNEGI 497

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTR-SLRENNIPTI 711
             P +  +  F+   ++    L +        A+ F       RH+ +T  +  +      
Sbjct: 498  MPASGIELSFIPFAIRRAFGLPSTTHRSAVYAYYFFRLLQRARHVTFTYNATPDGLRGGE 557

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
             SR++ +L ++                L     ++       ++R  P      Q    S
Sbjct: 558  MSRFMMQL-LVSDRFRIRQEALNAPRLLPQPTPIEVARPADLFERLNPVR--GGQQVPLS 614

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT--- 828
             S I + I+ P   Y  R+ +L          D    G +FH +  +  K    K     
Sbjct: 615  PSSINKYIDCPLQFYYHRVARLTPHEDTDAALDNRIFGNVFHQLAEDFYKPFEGKGKIDP 674

Query: 829  ------PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
                   E    +  +I+  F K N P    ++   +   +    L ++    + +E + 
Sbjct: 675  QRLAYYHEHPERLNPLIEEAFAKNNAPY--RLVDATIVRNLFRRMLAYDY-RLADLEIVR 731

Query: 883  VNIPAKMAIE------SIGIHLTGFADRIDL--LKSG--FVDITDYKTGDN-PKKETAQK 931
            +     +++           ++ G  DR+D+    SG   + + DYKTG    K    + 
Sbjct: 732  LECDVDISLPLKIDGTVRPFNVGGRIDRLDIACTPSGLRTLRVVDYKTGTKEQKANKMED 791

Query: 932  LIDP---------QLSLEAAALKAGSFSQID-CRKVANLFY-IRLKQKFKIDCIT-NDKK 979
            L  P         Q  L A A++            V+ + + I L  +     I    ++
Sbjct: 792  LFIPKKSRPYYIFQTFLYALAVQDKVCEFTGEDLPVSTVLFHIPLINEAYDPWIPFAKER 851

Query: 980  KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             Y    L+    +  IE++  + +   P               ++  L 
Sbjct: 852  VYDFGPLAADFREQSIELLQRMMD--TP-TFRQTDDLNVCAHCDFQQLC 897


>gi|227550044|ref|ZP_03980093.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM
            44291]
 gi|227077890|gb|EEI15853.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM
            44291]
          Length = 1096

 Score =  175 bits (442), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 135/1057 (12%), Positives = 272/1057 (25%), Gaps = 169/1057 (15%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKST---ILPIIKSLGDVV------------EEKFT 90
             V     T++A QEL     +     +    +L  +   G++              + + 
Sbjct: 62   EVLGLTFTRKAAQELGKRIRDRLSVLAANDALLRRLDPSGELADTLRVIAPTVATYDSYA 121

Query: 91   ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             DL+  Y L  PV    RL+  A L  I    +      L  E   +  +S   A  L  
Sbjct: 122  GDLVREYGLLVPVEPNARLITDAELHAIAHEVVLGYRGSLVAEGGKNPSVSTVVANVLDL 181

Query: 151  NLADIIDIIETEEKKWEDLHALKNEKYGMW-------------WLLAADFLKIAS---KY 194
            N A    +++ E    E    L   +                 W       +      + 
Sbjct: 182  NTAMGNSLMQPEYVAGEVHDFLAETESLPGRGDPATFTKEMAGWRDTQQLRRAYLPLVEE 241

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTV 249
               +L E    +         R   +H       +     +++     +  A   L+ ++
Sbjct: 242  LNAQLRERGLVTFNEQMSVAARLAHDHEFVGASQRQRYRVVMLDEYQDTSHAQRVLLRSL 301

Query: 250  ANHPNGA--------IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
                  A         V    D       W   T  +      +    T           
Sbjct: 302  FGQGRNADQPRRHPLTVTAVGDPMQAIYGWRGATAANLAAFVEDFPEPTG---------- 351

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                     K+L            + ++       +      ++    P       +V L
Sbjct: 352  ----APAPTKQLTTSWRNPAEVLALANRVSDSLLGTGS--DRVVAALDPRPGAGAGEVEL 405

Query: 362  IEADNEREEAISIAIALRMSLDENKK-----KSALITADRNLARRVKLELTRFGINIDIS 416
               ++E EE   +A  L    D  +       +A++      +  V   L   G+  +I 
Sbjct: 406  GFFEHEDEEIDFVADNLAAQYDAARAAGEPFSAAVLVRKNKTSPEVAEALEERGVPFEIV 465

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
                L      +   ++ + + +  D  A   ++  P    G  +      + A    A 
Sbjct: 466  GLAGLLDVPEVADTIAIASMLVRPGDSAAALRILAGPAVGLGLADLDALSRRAANLRGAA 525

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                   +  D  +    ++             +       +    L +        L  
Sbjct: 526  PAAPKPDEAADPTTHFEAQLEESVAEAQRITAGADTPAGLTDAVADLGETERYTPDGLRR 585

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
             K   +      + +   +L       + +   R          G        + + +  
Sbjct: 586  IKAVASKLRWLRTHALGKRLPDVFADIISVFGIRTEVLARPSSTGTVHLDRLLEEVSSYP 645

Query: 597  CIKANA-IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                 A +++ ++      G        ++  + IL   +++ L +DT+ +   +   + 
Sbjct: 646  GTSLTALLDYFELTREHEGGLAPGNVPVRTDRVQILTAHKAKGLEWDTVAVIRADAETYK 705

Query: 656  KNTAK-------------NPFLSRVMQSDL-------NLKTAEKYIGQAAHDFEMA--NG 693
              TA              + F     +++              K   ++A  F +A    
Sbjct: 706  ARTATFLTQPQLVPDEDFDAFADAENRTEFAKAAKAYVAAVRTKLAEESARLFYVAVTRS 765

Query: 694  TRHLIYTRSL--RENNIPTIASRWLQRLLVLGGT-------------------DFFDNLK 732
             R LI T S                  +  L                      D  + + 
Sbjct: 766  ARKLIVTGSAVKPGRKKVAEPYEHFAAIRDLVPETSVVHWYDGSSADVDEQEDDHDNAVP 825

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE---------------------------- 764
            +R   +     +           R +   P                              
Sbjct: 826  QRTGLWPHLQVEPGDAETAELVARARESLPEYIDGELYGLWERDTSALIEEHLAAASGEV 885

Query: 765  --AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
                P   + S++  L  D     ARR  +               RGT FH  + E    
Sbjct: 886  PVMMPGELTASDVVALSADSEQF-ARRARRPVPFKPNTY----AKRGTAFHEWLEEFYGA 940

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
            R      E+                  P ++                 E    +     F
Sbjct: 941  RPLLTEDEL-------------PGVDEPEVETRTLEKLKN------NFERSHWARRTPAF 981

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
            V  P ++A+      + G  D + +  +G   + D+KTG  P     +  +  QL++   
Sbjct: 982  VEHPFELALGES--VVRGRMDAVFMDDNG-WTVVDWKTGTKPAPAQMKSAM-LQLAVYRE 1037

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
            A +  +   +D R V   FY+R  + F    +    +
Sbjct: 1038 AWRRIAGDGLDVRAV--FFYVRTGEDFVPSDLPGSDE 1072


>gi|314936815|ref|ZP_07844162.1| ATP-dependent nuclease subunit B [Staphylococcus hominis subsp.
            hominis C80]
 gi|313655434|gb|EFS19179.1| ATP-dependent nuclease subunit B [Staphylococcus hominis subsp.
            hominis C80]
          Length = 1162

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 120/950 (12%), Positives = 257/950 (27%), Gaps = 144/950 (15%)

Query: 141  SPANAIWLAKNLADIIDIIETEEKKWEDLH-ALKNEKYGMWWLLAADFLKIASKYWTERL 199
            S A+    ++ L++ I   +        L   L++ +         + + +   Y+ ERL
Sbjct: 112  SQADYYGFSEKLSEQIQDFKKYSVTPHQLDLFLEDNELQTRTRHKLEDISLIYHYFEERL 171

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                        +                 I I G         +++  +  +     +L
Sbjct: 172  --NGEFITAEDSLNYFIEIMHKSEWIKHADIYIDGFYNFSTLEYQIIKALVQNAKQVTIL 229

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
               D                           H      K  D L   +E    L    N 
Sbjct: 230  LTTD-----------------------GNEDHF-SMFRKPSDVLIHLKEIANELHIPLN- 264

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                    +  +   +   ++     +    N  +    + L+E+ N REE   IA  + 
Sbjct: 265  ----EHYFTTPYRFKNKDLLQLEQQFDALQVNPTQSHGYIDLLESSNMREEVNEIARRII 320

Query: 380  MSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                +     +  A++  D   A   +  L ++ I  +I     ++      ++ SLL  
Sbjct: 321  KDTRDKHFRYQDIAILYRDETYAYLFESILPQYDIPYNIDTKKSMTHHPIMEMIRSLLEV 380

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I        +  L K  +    F         + LE   +         +D K   +D  
Sbjct: 381  IQSNMGLSPMMRLFKTNILSNQFKNSSYL--IDLLENFVIERGIYGKKWLDDKLFNIDNF 438

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLL----VDHILQCITPLVTYKTNKNSTCGNLSISD 552
                   H    + + + ED           +    + +      +    +    +   D
Sbjct: 439  TKMGRKAHQLTEEEKEAFEDVVRLKDDVVNKILRFEKAMLHSKNVRDYATAFYETMEAFD 498

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              K  +     + L +         ++    L  +   ++      + +   ++++    
Sbjct: 499  LPKYLMAHRDELDL-KGDHEKAEEIDQLWNGLIQILDDLVTVFEEEEMSLNRFLEVFDIG 557

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            ++        +    + I     +++ N   + + G+N+GV P+  + +  ++   +  L
Sbjct: 558  LEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHVYMVGMNDGVMPQPLSSSSLITDEEKRLL 617

Query: 673  N-------LKTAEKYIGQAAH--DFEMANGTRHLIYTRSLRE-NNIPTIASRWLQRLLVL 722
                      T++      A      M      + ++ SL          S +L ++  L
Sbjct: 618  EERGSVELSPTSDILQMDEAFVCYIAMTRACEQMTFSYSLMGMQGDEKEKSPFLNQIQAL 677

Query: 723  GGTDFFDNLKKRGQCYL-------------------DWTRKLDYTTKQPHY--------- 754
                   N+      Y                     W  +                   
Sbjct: 678  FSNLDIKNIHYLHHAYPLTLMEHPHQTKIHLFEALKSWLEEEAVADTWLDAYKVISENEE 737

Query: 755  --------------------KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                                  P+    L       S S  +   + P+  YA   L+L+
Sbjct: 738  LNDSINYLSTALTYDNETIQLTPQLSEALYGTSINASVSRFEGYNDCPFQHYATYGLRLN 797

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI-- 852
                 K   +  D G +FHN +  +  K   + +   N  +  + +   +          
Sbjct: 798  ER--TKYQLESFDLGNIFHNALKYISDKVNGEFSQLDNQKIHALTEEALQHVLPQVQFNL 855

Query: 853  ---DIIWR---HLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK--------------MA 890
               +  +R        I  S L+       +            +              M 
Sbjct: 856  MDSNAYYRYVSKRIGVIVESTLKALRYQNENTKFRPKRFETAFRKKPRTEEELIAHPLMT 915

Query: 891  IESIGIHLTGFADRID-LLKSGF--VDITDYKT---GDNPKKETAQKLIDPQLSLEAAAL 944
             + I IH+ G  DRID   K+    V+I DYK+     N   +        Q+      +
Sbjct: 916  TQGIPIHIRGQIDRIDAYTKNNTSFVNIIDYKSSNHSANLNLKKVYYGKQMQMMTYMDIV 975

Query: 945  KAGSFSQID---CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
               S  ++      K   L Y  +  +                +L+E++L
Sbjct: 976  LQNS-ERLGLSSEVKPGGLLYFHIHDERLKFEK--------WGDLTEEAL 1016


>gi|331694961|ref|YP_004331200.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
 gi|326949650|gb|AEA23347.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
          Length = 1106

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 115/1059 (10%), Positives = 254/1059 (23%), Gaps = 139/1059 (13%)

Query: 30   LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT------GKKSTILPIIKSLGD 83
            L+          +   +V + V ++RA  ++R     +        + +T   +++++  
Sbjct: 46   LLAALAERVREGVAPENVLLLVGSRRAAADMRERLTPLLHPHGGDPESTTRELLVRTVHS 105

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE-SPLSLPISP 142
                          +  P      RLL  A   ++ R  L   I+   P+          
Sbjct: 106  YAFGVLRLHAARHGDPPP------RLLAGAEQDVVVRELLAGEIEGDAPDSGWPDRLRPA 159

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                  A  L +++          E+L AL        W  A  F ++  +         
Sbjct: 160  LGLPGFAAELRELLLRAAERGLGPEELFALGERHGVDEWRAAGRFFRVYEQ--------- 210

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                 V          A            +  +     A    +          + +   
Sbjct: 211  -----VVLLRGAAGRGAPQATAPALDSAELVAAALDTLAADPDLRAAEQRRVRHLFVDDA 265

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
                P  +    T  ST  T+     +     ++             V+    V +  + 
Sbjct: 266  QDLDPQQLELVATLGSTASTTLLAGDADQ---AVLAFRGADPQGLRAVEAETVVLDVDHR 322

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                +  +                      +     V +    +   EA  IA  LR + 
Sbjct: 323  SRAAVRAATGRLAARLPGAGAGRVRVAAGPEDDEGQVLVRVFGSVAAEAAWIADRLRCAH 382

Query: 383  DENKKKSALITADRNLARRVKLELTRFGIN-----IDISAGIPLSTTLHSSILTSLLNAI 437
              +    + +       RR    L R  +      +     +PL+       L  +L A 
Sbjct: 383  LVDGVPWSEMAVLSRSTRRSLPALRRALVAGGVPIVAPPDELPLARQPAVVPLLMVLRAA 442

Query: 438  FKLND--FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             +  +    A A L+  PL           R        A   +  +       + + D 
Sbjct: 443  TRPEELDADAAAALLTSPLGSGDPMRMRRLRRGLLRLRAAAEPDPPAAHATGGTAALADV 502

Query: 496  IAT------------QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
             A             +      P   + L   +      +   +           + +  
Sbjct: 503  GAERVSSDPLLVEALRAAAAGEPDPLAALPPSETAPLRRVGALLATAAAAARDGASVEEV 562

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                   +                      +L         ++ +S  +           
Sbjct: 563  LWQVWQQTGLADRWSAASGRGGPAGAAADRDLDAVLALFDAAARYSDRLPGADVAGFTDY 622

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                +  + +  +++ P+      + +L    +R   +  + + G+ EG WP    +   
Sbjct: 623  ----LADQQLPTDSLAPRAPGGDAVALLTAHAARGREWRVVAVPGVQEGSWPDLRLRGSL 678

Query: 664  LSRVMQSDLNLKTAEKY----------IGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
            L      DL    AE              +    +   +   H +   +++  +     S
Sbjct: 679  LGNERLVDLLAGVAEPDGSVSRVAPLLAEERRLFYVACSRASHTLLVSAVQGEDE--QPS 736

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP-------------- 759
            R+L  L  L           R    L     +    +       +P              
Sbjct: 737  RFLDELDPLPAGAAETRTVHRPGRSLVLAELVGELRRAVCTPGDEPAAVARRERAAAQLA 796

Query: 760  -------------------------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                                        +  +    S S++++++  P      R     
Sbjct: 797  RLAADGVPGARPDEWYGLAPVSTDAPLRVPGEVVPVSPSDVERIVACPLRWVLERHGG-- 854

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                          G+L H ++             +      +   SH +          
Sbjct: 855  ----GDVGALAAVTGSLVHALVQASAAGAQPAELEDAL----RSAWSHLDAGAPWFGRRE 906

Query: 855  IWRHLFHKISHSFLEHEE-KIQSSIEKIFVNIPAKMAIESIG------------------ 895
            +       +  +F +         +  + V  P ++ +   G                  
Sbjct: 907  LE--RVRAMLAAFDDWVRTSRDQGLRLVAVEQPVRLDLPVEGDLPPDGSAQPEVGRSGGP 964

Query: 896  -IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI-- 952
             + L G  DR+++   G   + D KTG             PQL++   A   G+F ++  
Sbjct: 965  WLQLRGRVDRLEVDSEGRPVVVDVKTGKT-AVSARAAAEHPQLAVYQLAAALGAFGRLLE 1023

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
                      + L  +          +         +  
Sbjct: 1024 KGVTPGGARLVYLADRKASGQAKEPSQPPLDAAELARWR 1062


>gi|209523273|ref|ZP_03271829.1| ATP-dependent nuclease subunit B-like protein [Arthrospira maxima
            CS-328]
 gi|209496424|gb|EDZ96723.1| ATP-dependent nuclease subunit B-like protein [Arthrospira maxima
            CS-328]
          Length = 883

 Score =  174 bits (441), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 98/721 (13%), Positives = 211/721 (29%), Gaps = 128/721 (17%)

Query: 359  VALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELT-RFGINIDI 415
            V      N   E   +   ++  + +  +  K  L+T D      + L++   + + + +
Sbjct: 233  VQCHIYPNLEAEIRGVLSQVKQLIIDGVSASKIVLVTQDEKTYAPLLLDIAWEYQLPLRL 292

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
               IPL        +  L+  I     F + A L+ HPLA++    K    A+       
Sbjct: 293  FYKIPLRNIRLGYWIALLIEVIENNFPFESTAKLLHHPLARY-LTYKQWLEAR------- 344

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                               R         +    S L     +     VD I Q +    
Sbjct: 345  -----------------QKRPNNLAEWEELGLNLSLLKFPQSDTLPNWVDRIKQVLKFFD 387

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
              K +   +   ++ +      +   +      +R+       E    L           
Sbjct: 388  IRKNSSQWSREIVAFNQLETAWLELSKLDGDRLNRQEFFQDILEIITKLKVPMQ------ 441

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                                            + +   L  +  ++  + L G  EG+ P
Sbjct: 442  ---------------------------PGKGGIEVHTPLSLQGASYPHVFLIGFQEGILP 474

Query: 656  KNTAKNPFLSRVMQSDLN-----LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI 708
                 +P L       L+     L+TA     +    F       T+ L ++ + + +  
Sbjct: 475  AAIENDPVLDFYESRRLSQFNITLETAIDIAQRNELCFYELLRIPTKSLTFSCAEQHHKK 534

Query: 709  PTIASRWLQRLLVLGGTDFF---DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
            P + S +  RL +           ++++  + YL    +L          +         
Sbjct: 535  PLLPSPYSTRLGIETTPPPLLNLASIEEARRYYLQQPYQLSNDVIVNDIIKNWQVEQRRE 594

Query: 766  QPRT------------------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
               +                  +S S++  L   P+  +A  +L L      + +   + 
Sbjct: 595  SGESPDEYDGVIGIGVDYQNRIFSASQLTALGQCPFKWFATYLLCLKEPSEAEAEITGSL 654

Query: 808  RGTLFHNIITELIKKRI-------------NKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
            RG L+H  +  L+K                N+   +    ++   + +F+K        +
Sbjct: 655  RGRLYHRCLEILLKDIKTQTDLRRLDIQDINQALSQAEAALQAEENVNFDKFIGWEARRL 714

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914
               ++      +    E+ + ++ E I             G+ +    DRID   +G + 
Sbjct: 715  EGLNMLELNLQA----EDFLLANAEIISRENYFDAEW--YGLKVIARVDRIDRTPTG-LL 767

Query: 915  ITDYK-TGDNPKKETAQKLIDP---QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
            + DYK T  +P              Q+ L   A+    F+++    V    Y  L ++  
Sbjct: 768  VLDYKTTSSSPLGIKDDSGKAKINIQMPLYQQAIAQN-FNEVPEVDVK--LY-SLNKQRY 823

Query: 971  IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
            +     +      +  +E+  + L +       G   +       ++     E+D + R 
Sbjct: 824  LKAKLTEPAI--LEAFAEEVKQRLQQ-------GN--YPVAPDQKQQVCQYCEFDSVCRK 872

Query: 1031 A 1031
             
Sbjct: 873  G 873


>gi|228474397|ref|ZP_04059132.1| ATP-dependent nuclease subunit B [Staphylococcus hominis SK119]
 gi|228271756|gb|EEK13103.1| ATP-dependent nuclease subunit B [Staphylococcus hominis SK119]
          Length = 1162

 Score =  174 bits (441), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 123/950 (12%), Positives = 261/950 (27%), Gaps = 144/950 (15%)

Query: 141  SPANAIWLAKNLADIIDIIETEEKKWEDLH-ALKNEKYGMWWLLAADFLKIASKYWTERL 199
            S A+    ++ L++ I   +        L   L++ +         + + +   Y+ ERL
Sbjct: 112  SQADYYGFSEKLSEQIQDFKKYSVTPHQLDLFLEDNELQTRTRHKLEDISLIYHYFEERL 171

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                        +                 I I G         +++  +  +     +L
Sbjct: 172  --NGEFITAEDSLNYFIEIMHKSEWIKHADIYIDGFYNFSTLEYQIIKALVQNAKQVTIL 229

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
               D                           H      K  D L   +E    L    N 
Sbjct: 230  LTTD-----------------------GNEDHF-SMFRKPSDVLIHLKEIANELHIPLN- 264

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                    +  +   +   ++     +    N  +    + L+E+ N REE   IA  + 
Sbjct: 265  ----EHYFTTPYRFKNKDLLQLEQQFDALQVNPTQSHGYIDLLESSNMREEVNEIARRII 320

Query: 380  MSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                +     +  A++  D   A   +  L ++ I  +I     ++      ++ SLL  
Sbjct: 321  KDTRDKHFRYQDIAILYRDETYAYLFESILPQYDIPYNIDTKKSMTHHPIMEMIRSLLEV 380

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I        +  L K  +    F         + LE   +         +D K   +D  
Sbjct: 381  IQSNMGLSPMMRLFKTNILSNQFKNSSYL--IDLLENFVIERGIYGKKWLDDKLFNIDNF 438

Query: 497  ATQKNNTHVPHWQSRLSEEDKELA-VLLVDHILQCITPLVT---YKTNKNSTCGNLSISD 552
                   H    + + + ED       +V+ IL     ++     +    +    +   D
Sbjct: 439  TKMGRKAHQLTEEEKEAFEDVVRLKDDVVNKILHFEKAMLHSKNVRDYATAFYETMEAFD 498

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              K  +     + L +         ++    L  +   ++      + +   ++++    
Sbjct: 499  LPKYLMAHRDELDL-KGDHEKAEEIDQLWNGLIQILDDLVTVFEEEEMSLNRFLEVFDIG 557

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            ++        +    + I     +++ N   + + G+N+GV P+  + +  ++   +  L
Sbjct: 558  LEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHVYMVGMNDGVMPQPLSSSSLITDEEKRLL 617

Query: 673  N-------LKTAEKYIGQAAH--DFEMANGTRHLIYTRSLRE-NNIPTIASRWLQRLLVL 722
                      T++      A      M      + ++ SL          S +L ++  L
Sbjct: 618  EERGSVELSPTSDILQMDEAFVCYIAMTRACEQMTFSYSLMGMQGDEKEKSPFLNQIQAL 677

Query: 723  GGTDFFDNLKKRGQCYL-------------------DWTRKLDYTTKQPHY--------- 754
                   N+      Y                     W  +                   
Sbjct: 678  FSNLDIKNIHYLHHAYPLTLMEHPHQTKIHLFEALKSWLEEEAVADTWLDAYKVISENEE 737

Query: 755  --------------------KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                                  P+    L       S S  +   + P+  YA   L+L+
Sbjct: 738  LNDSINYLSTALTYDNETIQLTPQLSEALYGTSINASVSRFEGYNDCPFQHYATYGLRLN 797

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI-- 852
                 K   +  D G +FHN +  +  K   + +   N  +  + +   +          
Sbjct: 798  ER--TKYQLESFDLGNIFHNALKYISDKVNGEFSQLDNQKIHALTEEALQHVLPQVQFNL 855

Query: 853  ---DIIWR---HLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK--------------MA 890
               +  +R        I  S L+       +            +              M 
Sbjct: 856  MDSNAYYRYVSKRIGVIVESTLKALRYQNENTKFRPKRFETAFRKKPRTEEELIAHPLMT 915

Query: 891  IESIGIHLTGFADRID-LLKSGF--VDITDYKT---GDNPKKETAQKLIDPQLSLEAAAL 944
             + I IH+ G  DRID   K+    V+I DYK+     N   +        Q+      +
Sbjct: 916  TQGIPIHIRGQIDRIDAYTKNNTSFVNIIDYKSSNHSANLNLKKVYYGKQMQMMTYMDIV 975

Query: 945  KAGSFSQID---CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
               S  ++      K   L Y  +  +                +L+E++L
Sbjct: 976  LQNS-ERLGLSSEVKPGGLLYFHIHDERLKFEK--------WGDLTEEAL 1016


>gi|116493559|ref|YP_805294.1| DNA helicase/exodeoxyribonuclease V, subunit B [Pediococcus
            pentosaceus ATCC 25745]
 gi|122264977|sp|Q03D70|ADDB_PEDPA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|116103709|gb|ABJ68852.1| DNA helicase/exodeoxyribonuclease V, subunit B [Pediococcus
            pentosaceus ATCC 25745]
          Length = 1192

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 110/1002 (10%), Positives = 278/1002 (27%), Gaps = 159/1002 (15%)

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
             I S+  +         +  Y   P V++    + L R+IL  +++L             
Sbjct: 71   QILSISRLAWFFLRNSSIYQY---PRVTSSSSNMLLYRVILEHQDEL------------- 114

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-----EKYGMWWLLAADFLKIA 191
            +L  +    + L + +A  +   +      ++L  +          GM        L I 
Sbjct: 115  TLFHNIDAQLGLVQKIATQLAEFKQGNVGPDELGRVAENIAENSDAGMDIKAKLHDLGII 174

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
               + E +              L        M  +    II+G +        L+  +  
Sbjct: 175  YSAYEEEIQSR-FIDASDITHTLTDEL--SKMDLSGQSFIISGFSNFTAEEMSLIQALMK 231

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                 ++    D  +                           +   K++   +    + K
Sbjct: 232  ANGNVVI----DLIMDKFP------------LYEKVSENSLFFENEKIIFKFNAWAHENK 275

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                    ++   +      L     +     +  +K  N       V + +A++   E 
Sbjct: 276  VKSLEPVRLHRVRVNSDLLKLEKYWIESSEGQVGGSKQENNAC----VTIFQANSRYAEV 331

Query: 372  ISIAIALRMSLDENKK----KSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLH 426
              +A  +R  + ++        +++T   +    +      +  + I     I +     
Sbjct: 332  EHVATLIRQKMAKDPSLKFSDFSVLTRHLSDYSTIIKPIFDQMELPIFYDLQIAMKDHPL 391

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL----SRAKNALELVALRGNKNS 482
              ++ +L +       +  +  L+K  L      +        ++ +  E   L+     
Sbjct: 392  LELINALFDIRAHHFRYEDVMRLLKTGLLFPETEDDPHGMDFFKSVHITENYVLKQGIYG 451

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
               +  K     R     +       +  +++    +   + + ++     L T  T   
Sbjct: 452  DRWLQKKDWKYSRF-NDIDEEKQTDEEIEINQRINTVKNYVAETVVPFFNQLSTATTGVE 510

Query: 543  STCGNLSIS---DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
            +              +  +         E R       E+  +T   +  + ++      
Sbjct: 511  AAKALYDFLIKNGIDQCLLAWRDQWIE-EGRLAKAAEPEQTWETFIQMLDEFVDILGDQP 569

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +   ++ ++    +G T          + +  +   ++++   + + G  + V P+   
Sbjct: 570  FDPDNFMGLLNAGFEGATYSQIPSTLDQILVSESGMVQMVDRKIVFIIGATDRVMPEQIQ 629

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-----------ANGTRHLIYTRSLRENNI 708
             N FL++  ++ ++    +    + ++D +M             G+  LI++     N+ 
Sbjct: 630  DNDFLNQDGKNQIDPFLDDDQFLRISNDRQMRQEPYLNYLTFMIGSDELIFSYPKSGNDG 689

Query: 709  -PTIASRWLQRLLVLGG------TDFFDNLKKRGQC----------------YLDWTRKL 745
                 S +++R+    G               R                    + + R +
Sbjct: 690  VELKISPYVERIGKHFGIIAQSLPSRPTTEPVRLDPPFIELFIGSNRSTLSHLIQYARAM 749

Query: 746  DYTTK---------------------------------QPHYKRPKPFPPLEAQPRTYSF 772
                                                   P   +P+    L       S 
Sbjct: 750  HEAKSEADPRWNLIYTILRQSTLGSLTDQLLSSLEYKNIPEKLKPEIVEGLYGDTIYASV 809

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---P 829
            S++++   + Y+ + +  LKL             D G  FH  + +LIK    +N     
Sbjct: 810  SKLEEFYRNEYSYFLKYGLKLQERETSD--LSPADTGQYFHAAMDKLIKMITTENLNFNE 867

Query: 830  EINHLMKQIIDSHFEKENLPPHIDI--------IWRHLFHKISHSFLE--HEEKIQSSIE 879
                 ++QI     ++       D           R    +   + +E   ++  ++ + 
Sbjct: 868  VNQEQIEQIAKRLVQQMEQDQQFDQFNGTYRMGFLRKQLDRTVQAMVEAIFKQLARTRMR 927

Query: 880  KIFVNIPAKM-------------AIESIGIHLTGFADRIDLLK--SGFVD-ITDYKTG-D 922
             I                       E   I++ G  DRID ++        I DYK+   
Sbjct: 928  PIASEQLFGQIGSQSGLPALNFKVGEGKEINVRGKIDRIDKIEIGDKDYLGIVDYKSSNR 987

Query: 923  NPKKETAQKLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962
                  A   +  Q+ +    ++            ++++  Y
Sbjct: 988  KFDFTDAYYGLAMQMLMYLDVVQRNKEKIDPATKAEISSALY 1029


>gi|257425015|ref|ZP_05601442.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            55/2053]
 gi|257272585|gb|EEV04708.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            55/2053]
          Length = 1043

 Score =  174 bits (440), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 114/966 (11%), Positives = 272/966 (28%), Gaps = 141/966 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L + + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIS 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            N  N    R    ++ +   +          +    N   C   + ++E+   REE   I
Sbjct: 257  NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315

Query: 375  AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            A  + + + +     +  A++  D + A      L  + I  +I     ++      ++ 
Sbjct: 316  ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            SL+  I        +  L+K  +    +     +   + LE   L         +D +  
Sbjct: 376  SLIEVIQSNWQINPMLRLLKTDVLTTSY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433

Query: 492  VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547
             ++  +      H      R + E   +L   ++D IL     ++   T K    +   +
Sbjct: 434  NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +   +     +T    + L+          ++    L  +   ++        +   +++
Sbjct: 494  MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +    ++        +    + I     +++ N   + L G+N+G  P+    +  ++  
Sbjct: 553  VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612

Query: 668  MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717
             +         +L+  +    + +A   +      + ++ ++ SL   +      S +L 
Sbjct: 613  EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLN 672

Query: 718  RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758
            ++  L       N+ +                     +    W              +  
Sbjct: 673  QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732

Query: 759  PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789
                                                +    S S  +     P+  YA  
Sbjct: 733  RDSDHLSQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848
             LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+    
Sbjct: 793  GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850

Query: 849  -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888
                                 I  + L   +     S           +           
Sbjct: 851  VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910

Query: 889  ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939
                  + I I++ G  DRID   K+    V+I DYK+  G            +  Q+  
Sbjct: 911  QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970

Query: 940  EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994
                +    +    + I   K   L Y  + + + K     +  +     +L +K    L
Sbjct: 971  YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026

Query: 995  IEIVTL 1000
              +V  
Sbjct: 1027 SGLVNA 1032


>gi|49483126|ref|YP_040350.1| hypothetical protein SAR0928 [Staphylococcus aureus subsp. aureus
            MRSA252]
 gi|257427681|ref|ZP_05604080.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            65-1322]
 gi|257430316|ref|ZP_05606699.1| exonuclease RexB [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433013|ref|ZP_05609373.1| exonuclease RexB [Staphylococcus aureus subsp. aureus E1410]
 gi|257435917|ref|ZP_05611965.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            M876]
 gi|282903503|ref|ZP_06311394.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            C160]
 gi|282905281|ref|ZP_06313138.1| exonuclease RexB [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910542|ref|ZP_06318346.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            WBG10049]
 gi|282913738|ref|ZP_06321527.1| exonuclease RexB [Staphylococcus aureus subsp. aureus M899]
 gi|282918664|ref|ZP_06326401.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            C427]
 gi|282923654|ref|ZP_06331334.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            C101]
 gi|283957704|ref|ZP_06375157.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            A017934/97]
 gi|293500780|ref|ZP_06666631.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            58-424]
 gi|293509731|ref|ZP_06668442.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            M809]
 gi|293524318|ref|ZP_06671005.1| exonuclease RexB [Staphylococcus aureus subsp. aureus M1015]
 gi|295427449|ref|ZP_06820084.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            EMRSA16]
 gi|297590191|ref|ZP_06948830.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            MN8]
 gi|81651447|sp|Q6GIC2|ADDB_STAAR RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|49241255|emb|CAG39934.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            MRSA252]
 gi|257275874|gb|EEV07347.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            65-1322]
 gi|257279093|gb|EEV09704.1| exonuclease RexB [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282428|gb|EEV12563.1| exonuclease RexB [Staphylococcus aureus subsp. aureus E1410]
 gi|257285108|gb|EEV15227.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            M876]
 gi|282314522|gb|EFB44912.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            C101]
 gi|282317798|gb|EFB48170.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            C427]
 gi|282322770|gb|EFB53092.1| exonuclease RexB [Staphylococcus aureus subsp. aureus M899]
 gi|282325934|gb|EFB56242.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            WBG10049]
 gi|282331688|gb|EFB61200.1| exonuclease RexB [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596458|gb|EFC01419.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            C160]
 gi|283791155|gb|EFC29970.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            A017934/97]
 gi|290921281|gb|EFD98342.1| exonuclease RexB [Staphylococcus aureus subsp. aureus M1015]
 gi|291095785|gb|EFE26046.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            58-424]
 gi|291467828|gb|EFF10343.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            M809]
 gi|295128837|gb|EFG58468.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            EMRSA16]
 gi|297576490|gb|EFH95205.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            MN8]
 gi|312438671|gb|ADQ77742.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            TCH60]
 gi|315194498|gb|EFU24890.1| hypothetical protein CGSSa00_12265 [Staphylococcus aureus subsp.
            aureus CGS00]
          Length = 1158

 Score =  174 bits (440), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 114/966 (11%), Positives = 272/966 (28%), Gaps = 141/966 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L + + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIS 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            N  N    R    ++ +   +          +    N   C   + ++E+   REE   I
Sbjct: 257  NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315

Query: 375  AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            A  + + + +     +  A++  D + A      L  + I  +I     ++      ++ 
Sbjct: 316  ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            SL+  I        +  L+K  +    +     +   + LE   L         +D +  
Sbjct: 376  SLIEVIQSNWQINPMLRLLKTDVLTTSY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433

Query: 492  VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547
             ++  +      H      R + E   +L   ++D IL     ++   T K    +   +
Sbjct: 434  NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +   +     +T    + L+          ++    L  +   ++        +   +++
Sbjct: 494  MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +    ++        +    + I     +++ N   + L G+N+G  P+    +  ++  
Sbjct: 553  VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612

Query: 668  MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717
             +         +L+  +    + +A   +      + ++ ++ SL   +      S +L 
Sbjct: 613  EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLN 672

Query: 718  RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758
            ++  L       N+ +                     +    W              +  
Sbjct: 673  QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732

Query: 759  PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789
                                                +    S S  +     P+  YA  
Sbjct: 733  RDSDHLSQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848
             LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+    
Sbjct: 793  GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850

Query: 849  -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888
                                 I  + L   +     S           +           
Sbjct: 851  VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910

Query: 889  ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939
                  + I I++ G  DRID   K+    V+I DYK+  G            +  Q+  
Sbjct: 911  QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970

Query: 940  EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994
                +    +    + I   K   L Y  + + + K     +  +     +L +K    L
Sbjct: 971  YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026

Query: 995  IEIVTL 1000
              +V  
Sbjct: 1027 SGLVNA 1032


>gi|302670099|ref|YP_003830059.1| ATP-dependent nuclease subunit B AddB [Butyrivibrio proteoclasticus
            B316]
 gi|302394572|gb|ADL33477.1| ATP-dependent nuclease subunit B AddB [Butyrivibrio proteoclasticus
            B316]
          Length = 1179

 Score =  174 bits (440), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 118/997 (11%), Positives = 275/997 (27%), Gaps = 128/997 (12%)

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             + ++ + L L R+  I  +KLP I  +++    +               +   I     
Sbjct: 84   VLDDVGKSLILRRVADILGDKLPVIGPNMHKPGYI-------------DEVKSTISEFMQ 130

Query: 162  EEKKWEDLHALKNEKY-GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 + L  L+ +             L++    + E +     ++       ++     
Sbjct: 131  YGITDDQLALLEEKSGKRGALHSKLGDLRLLYSEFHEYISNKYITTEETL--DILCKSVS 188

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                 +   II  G TG  P   R++  +       IV   +D        +   ++   
Sbjct: 189  KSKLISNSVIIFDGFTGFTPIQYRVIKQLLKSATEVIVTVTIDAGEDVYANSYEEQELFM 248

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
            ++          +Y L++          D     N+ +      +  S      D   + 
Sbjct: 249  LSKKTIRDLEKLEYELSQEEMKSVGTLPDFATWRNMRDRSGDIRINSSPVRRLQDNKALS 308

Query: 341  NTD--ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALIT-A 394
              +  +        +    ++ + EA     E     + +  ++       +  A++  +
Sbjct: 309  FLEENLFRYNAKKYEGVPQELEIFEASTPEAEVRQTMLKITDAVRSGKYAYRDIAIVCGS 368

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                +  +     RFGI + I     L        LTS +        +  +   ++  +
Sbjct: 369  LDEYSELIAQTAGRFGIPVYIDQNTSLMLNPFIEYLTSAIGIAISGYKYEDVFHYMRSGM 428

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              F   +  +           +RG     D    +         +K +       S + +
Sbjct: 429  TAFSREDTDILDNYVRALG--IRGKSQWDDRFARRMPKKFMSGNKKTDDMTERELSIMEK 486

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             +     +  +          T K   ++    +  ++               +      
Sbjct: 487  LENMRVTITDELSPLFRVQKATAKEISDAILEVIDRNNSKARLDEYRDFFIQ-KGNLRKA 545

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
              FE+    + +L ++I E          E+ DI++       V    +    + +    
Sbjct: 546  KEFEQIYDKVIALLTQIGELIGTDVLTLQEYRDILSVGFGDIEVGTIPQDVDRIIVGDME 605

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS---DLN-----LKTAEKYIGQAAH 686
             +RL     L   G  +G  P N      +S V +    DL        T  + +     
Sbjct: 606  RTRLKEIKILFFLGTVDGAIPSNAGTGGIISDVDRQFLVDLGTGVELAPTPRQQMYIQRL 665

Query: 687  DFEMANGTR--HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG--------- 735
               M        L  + +  +    +    +L   L     +      + G         
Sbjct: 666  YLYMNLTKPTDKLYLSYAELDGEGKSRRPAYLVPKLKQMFPELIVQRPEDGSFDSQNAAY 725

Query: 736  -QCYLDWTRKLDYTTKQP------------------------HYKRPKPFPPLEAQPRTY 770
                ++    +                                 ++ +       + +  
Sbjct: 726  MDSLMNAAELIRKYAIDVISDEEKSSLYALLKVLGENENTKSTLEKIEAAAFRHYENKPL 785

Query: 771  ---------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                           S S ++   +  YA + +  L+L+     + D D +D G +FH +
Sbjct: 786  AKMLALSLYGASLENSVSRLETFASCCYAHFIKYGLQLEERQ--EYDFDTSDLGNVFHEV 843

Query: 816  ITELIKK-------RINKNTPEINHLMKQIIDSHFEKENL----PPHIDIIWRHLFHKIS 864
            + +   +           +  E   ++ + +    ++           +       H+I 
Sbjct: 844  LEKYTSEIMTRKIDWRELSDEESEQILGRALTECVDRYGDTILRSTSRNQHMIDRIHRIL 903

Query: 865  HSFLEHEEKIQSS--IEKIFVNIPAK--MAIESIGI--------------HLTGFADRID 906
               +   +   S       F+ +  +    ++ I I               L G  DR+D
Sbjct: 904  TRTVGILKYQISKGVFNPAFLEMDFREAGNLDEINITLSEDEKTRIIEKMRLRGRIDRVD 963

Query: 907  LLKSGFVD---ITDYKTGDNP-KKETAQKLIDPQLSLE---AAALKAGSFSQIDCRKVAN 959
            L +        + D+K+G            +  QL +    AAA++    S       A 
Sbjct: 964  LCEDDDHIYVKVMDFKSGKKKFNLAFLYHGLQLQLVMYMNVAAAVEKK-ISGGKEVVPAA 1022

Query: 960  LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L Y  +      D + + K     ++++E   K L  
Sbjct: 1023 LLYYHVD-----DPMADGKGDMQPEDINEAIKKELRT 1054


>gi|253731574|ref|ZP_04865739.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus USA300_TCH959]
 gi|253724817|gb|EES93546.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus USA300_TCH959]
          Length = 1158

 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 115/967 (11%), Positives = 271/967 (28%), Gaps = 143/967 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L   + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAIS 373
            N  N    R           +  D+++ +   + +   +      + ++E+   REE   
Sbjct: 257  NELNISIERQYFKHLY--RFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINE 314

Query: 374  IAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            IA  + + + +     +  A++  D + A      L  + I  +I     ++      ++
Sbjct: 315  IARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMI 374

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             SL+  I        +  L+K  +    +     +   + LE   L         +D + 
Sbjct: 375  RSLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDEL 432

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCG 546
              ++  +      H      R + E   +L   ++D IL     ++   T K    +   
Sbjct: 433  FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATTFYE 492

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
            ++   +     +T    + L+          ++    L  +   ++        +   ++
Sbjct: 493  SMEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFL 551

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            ++    ++        +    + I     +++ N   + L G+N+G  P+    +  ++ 
Sbjct: 552  EVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITD 611

Query: 667  VMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSL-RENNIPTIASRWL 716
              +             T++      A      M    + + ++ SL   +      S +L
Sbjct: 612  EEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRARQDVTFSYSLMGSSGDDKEISPFL 671

Query: 717  QRLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRP 757
             ++  L       N+ +                     +    W              + 
Sbjct: 672  NQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQV 731

Query: 758  KPFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYAR 788
                                                 +    S S  +     P+  YA 
Sbjct: 732  IRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYAS 791

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
              LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+   
Sbjct: 792  HGLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILP 849

Query: 849  --------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK---------- 888
                                  I  + L   +     S           +          
Sbjct: 850  KVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELI 909

Query: 889  ----MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLS 938
                   + I I++ G  DRID   K+    V+I DYK+  G            +  Q+ 
Sbjct: 910  AQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMM 969

Query: 939  LEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKN 993
                 +    +    + I   K   L Y  + + + K    ++  +     +L +K    
Sbjct: 970  TYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFK-- 1025

Query: 994  LIEIVTL 1000
            LI +V  
Sbjct: 1026 LIGLVNA 1032


>gi|227550043|ref|ZP_03980092.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227077889|gb|EEI15852.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 1018

 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 135/1042 (12%), Positives = 278/1042 (26%), Gaps = 175/1042 (16%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI--LPIIKSLGD 83
            ++  L++       +      + +   +K +   LR E  +       +   P+++S+  
Sbjct: 47   VSSFLIDTVVQAVESGADPRGILVISSSKESGARLRVELSDRLAASGFVIDEPMVRSVHS 106

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            +              L   +S  ++   + +L+                 +         
Sbjct: 107  LAFALLRQRAGGDIRL---ISGAEQDAAIRQLLQGHAE--------DGRGTWPEQLRPAL 155

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
              +  A+ L D +      +   + L  L        W  A DFL    +     L    
Sbjct: 156  PMVGFARQLRDFLLRAVERQLTPDALRNLGKVHNRPIWSAAGDFLDEYQQV--MALNPAR 213

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
              S      +++R E E         +++  +    PA   L+  +    +  +V  G D
Sbjct: 214  FVSASELVSSVLRGEIEQ----RWHTVVVDDAQHLAPAAGELVRRLVERASLGVV--GGD 267

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +   +                      +    L     +V  LG        +
Sbjct: 268  LGQSVFRFRGASP---------------------RFFANLAGLPHEVIDLGESRRAPIAQ 306

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
            + V   +                                       +   +A  +R +  
Sbjct: 307  AAVCDSA-------------------------------------AAQNSLVADTVRRAHL 329

Query: 384  ENK---KKSALITADRNLARRVKLELTRFGINI-DISAGIPLSTTLHSSILTSLLNAIFK 439
            E     ++ A+I    +    V+  L   G+ +      + LS     + L   L A+  
Sbjct: 330  EGGVAYREMAVIVRSASSIESVRRALLHAGVPVMVNPTDVVLSEQRIVAALILGLRALEG 389

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                     L+  P+                      R                D +   
Sbjct: 390  ELSSAEWRELLLGPVGGTDPVTLRRLLRGLRRWEPGER--------------AEDTLRHL 435

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
              +T        +  E +   +  V  +L      + + + ++      + +      + 
Sbjct: 436  LRSTQPLPDFGVVLTERELSILNHVREVLDAGRAELAHGSIEDVLWAVWNATGLANHLLI 495

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                      +   +L         +  + +    GS +   A     I  +++      
Sbjct: 496  AALRGGATGSQADRDLDSVMALFDAAGDYVERRVGGSDV---AGFVAHISEQVLPTGVRD 552

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL----- 674
             +      + +L    +    F T+I+ G+ E  WP          +    DL       
Sbjct: 553  RRTATPDAVAVLTAHGAVRCEFHTVIVAGVQEMQWPSLAETGTMFGQEELVDLVDNDVDP 612

Query: 675  -----KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT--IASRWLQR--------- 718
                 + AE+   +        +   H +   ++ E +       SR+++          
Sbjct: 613  AVPVSRKAERLAEEKRLFDVAVSRATHRVLVTAVDEPDGEEVIQPSRFVEDFCTTHDIAP 672

Query: 719  ---------------------LLVLGGTDFFDNLKK-----------RGQCYLDWTRKLD 746
                                 + VL   D    L++           R Q      R  D
Sbjct: 673  ACVTTASTSASPAAGAEEVTAVRVLARDDVIAELRRALNDSGIGEAGRRQAARQLARLAD 732

Query: 747  YTTKQPHYKR-----PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                    +              A P   S S I+ L+  P     +R++ L        
Sbjct: 733  AGVPGADPEEWWTTTEAASHEALAVPERLSPSRIESLLACPMREVLQRMVGL-------D 785

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
                   G++ H     + +              ++ +D        P          F 
Sbjct: 786  SSLHMVWGSMAHAYFEAVGRGVDETFARNAVLEARRSVDDA------PQWKVEREIAEFE 839

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
             +        +  +S+ E++ V     + I S G+ + G ADRI+   SG + I D KTG
Sbjct: 840  AMLQRAHRWLQTSRSAFEQVAVEADIDVEI-SPGLRVVGRADRIERDGSGALHIVDLKTG 898

Query: 922  D-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               P K+ A+   +PQL     AL  G+      R  A            +     D+  
Sbjct: 899  SGVPSKDDAEA--NPQLEAYQLALSRGAIDGETVRSAAPGETPNTVGGAVLVYPKVDRDA 956

Query: 981  YSADELSEKSLKNLIEIVTLLQ 1002
             +  E + KS + L +   L+ 
Sbjct: 957  AATREQTAKSEERLAQFAELIA 978


>gi|322516093|ref|ZP_08069030.1| exonuclease RexB [Streptococcus vestibularis ATCC 49124]
 gi|322125508|gb|EFX96854.1| exonuclease RexB [Streptococcus vestibularis ATCC 49124]
          Length = 1121

 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/935 (13%), Positives = 267/935 (28%), Gaps = 134/935 (14%)

Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188
               +  L +             L D+   ++       DL  L         +   + L
Sbjct: 110 SHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQ-------VEKQEDL 162

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMS 247
                   + L+  +  +            + HL K     + +I G T        L++
Sbjct: 163 VRIFSVAQDLLLAGDFDNQSKLSAFFKEITSGHLDKALGNTVLVIDGFTRFSAEEEALVA 222

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            + +  +  ++          A +        ++              L  L     +  
Sbjct: 223 LLNDKCHQIVIGTYASQKAYRANFVYGNVYQASVDF------------LRTLAQTYKVTP 270

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
           + V       N  + R   + +S     T D + T   +            + + E  N+
Sbjct: 271 DYVTT-DKEGNPSFDRISRLLESRHDFSTVDEQLTAQDK----------QALQVWEVVNQ 319

Query: 368 REEAISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
           +EE   +A ++R  L + K+      L+  + +   +V     +F I         +S+ 
Sbjct: 320 KEEVAQVAKSIRQLLADGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSH 379

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                + SL            +  LVK  L      E                   N  D
Sbjct: 380 PLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDL----------FEYYINFAD 429

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
           I      + D  A  ++              D +L   L   +++ +  L+  +  K S+
Sbjct: 430 IKGRHKFLSDFTANSRDKY------------DLDLLNGLRLQMVEPLDKLLNSRKQKGSS 477

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                +     + V         +  +      E+  K  + L  ++         +  +
Sbjct: 478 LLKKLVVFLEAVQVPSKMASLTAKASEAEKEQNEQVWKAFTQLLEQVETIFGEETLSVDD 537

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
           ++ I+   +     +        + +      +  +   +   G+ +  +PK       L
Sbjct: 538 FLSILRSGMLACDYRTVPATIDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKSLL 597

Query: 665 SRVMQSDLNLKTAEKY--------IGQAAHDFEMAN---GTRHLIYTRSLRENNIPTIAS 713
           S   +S +N  T E            Q  H   M+     +  L+ ++    N      S
Sbjct: 598 SDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDDMS 657

Query: 714 RWLQRLLVLGGTDFFDNL---------------------------------------KKR 734
            +L+ LL LG                                                  
Sbjct: 658 VYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDADLDKETQTFWTV 717

Query: 735 GQCYLD---------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
              YL              +D  T      +         +P   S S +    N+ Y  
Sbjct: 718 AVRYLRKRLDKDQVLIPNVIDDVTTTKVDDQVMQLVFPGEEPLKLSASALMTFYNNQYLY 777

Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHF 843
           + R +L L+ +      PD    GT  H +   ++    ++N  +           +  F
Sbjct: 778 FLRYVLGLEELESIH--PDARHHGTYLHRVFECVMGDSSSENFDDKLEKAIAQTNQEQPF 835

Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
           E          + R +   I+ S         + ++         + +    I +TG  D
Sbjct: 836 ELLYTEDQESRLSRQILEDIARSTASVLRDNAA-VKVEREEAKFDLLLA-NSIKITGIID 893

Query: 904 RIDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANL 960
           R+D L  G + + DYK+G N      QK    + PQL     AL+     ++D  ++   
Sbjct: 894 RVDRLTDGALGVVDYKSGKN--IFDIQKFYNGLSPQLVTYLEALRQT--YKVDADQLFGA 949

Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            Y+ ++          +  ++  D+L+ ++ K L 
Sbjct: 950 MYLHMQDP------QLNLAQFGLDKLAAQAHKELT 978


>gi|55823611|ref|YP_142052.1| ATP-dependent exonuclease subunit B [Streptococcus thermophilus
           CNRZ1066]
 gi|81558976|sp|Q5LY79|ADDB_STRT1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|55739596|gb|AAV63237.1| ATP-dependent exonuclease, subunit B [Streptococcus thermophilus
           CNRZ1066]
          Length = 1106

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 119/934 (12%), Positives = 256/934 (27%), Gaps = 134/934 (14%)

Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
              +  L +             L D+   ++       DL  L         +   + L 
Sbjct: 96  HMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQ-------VEKQEDLV 148

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMST 248
                  + L+  +  +            + HL +     + +I G T        L++ 
Sbjct: 149 RIFSAAQDLLLAGDFDNQSKLSAFFKEITSGHLDEALSNTVLVIDGFTRFSAEEEALVAL 208

Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
           + +  +  +V      +     +           +S           L  L     +  +
Sbjct: 209 LNDKCHQIVV----GTYTSQKAYKANFVYGNAYQASVDF--------LRTLAQTYKVIPD 256

Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
            V       N  + R   + +S     T D   T+  ++           + + E  N++
Sbjct: 257 YVTT-DKEGNLSFARISRLLESRHDFSTVDETVTEQDKH----------ALKVWEVVNQK 305

Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKL---ELTRFGINIDISAGIPLSTTL 425
           EE   +A ++R  L + K+   ++    +             +F I         +S+  
Sbjct: 306 EEVAQVAKSIRQLLADGKRYKDILVLLGDEESYKLHVGQIFRKFDIPYYFGKEESMSSHP 365

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
               + SL            +  LVK  L      E                 +K   D 
Sbjct: 366 LVEFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDLFEYYVNFADIKGRHKFLSDF 425

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
                   +        + +     +     K+    L+  ++  +  +    +      
Sbjct: 426 TANSRDKYNLDQINALRSQLIEPLDKFLNSRKQKGSSLLKKLVVFLEAV-QLPSQMFELS 484

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
              S ++                         E+  K  + +  ++         +  ++
Sbjct: 485 TKASEAE---------------------KEQNEQVWKAFTHILEQVETIFGDESLSVDDF 523

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
           + I+   +     +        + +      +  +   +   G+ +  +PK       LS
Sbjct: 524 LSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKSLLS 583

Query: 666 RVMQSDLNLKTAEKYIGQ--------AAHDFEMAN---GTRHLIYTRSLRENNIPTIASR 714
              +S +N  T E               H   M+     +  L+ ++    N      S 
Sbjct: 584 DEERSRINEATDEHRRLDIVTQINSKRGHFVAMSLFNAASEQLVLSQPQIINESQDDMSV 643

Query: 715 WLQRLLVLGGTDFFDNL---------------------------------------KKRG 735
           +L+ LL LG                                                   
Sbjct: 644 YLKELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVA 703

Query: 736 QCYLD---------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
             YL            + +D  T      +       E +P   S + +    N+ Y  +
Sbjct: 704 VRYLRKRLDKDQVLIPKVIDDVTTTKVDDQVMQLVFPEEEPLKLSATALTTFYNNQYLYF 763

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844
            R +L+L+ +      PD    GT  H +   ++    +++  +           D  FE
Sbjct: 764 LRYVLELEELESIH--PDARHHGTYLHRVFERVMGDSSSESFDDKLEKAIAQTNQDQPFE 821

Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                       R +   I+ S         +   +    +   + +    I +TG  DR
Sbjct: 822 ILYTEDQESRFSRQILEDIARSTASVLRDNAAVKVECE-EVKFDLLLA-NSIKITGIIDR 879

Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
           +D L  G + + DYKTG N      QK    + PQL     AL+     ++D  ++    
Sbjct: 880 VDRLTDGALGVVDYKTGKN--VFDIQKFYNGLSPQLVTYLEALRQT--YKVDADQLFGAM 935

Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
           Y+ +           +  +   ++L+ ++ K L 
Sbjct: 936 YLHM------QVPQLNLSQIGLEKLAAQAHKELT 963


>gi|323443831|gb|EGB01443.1| ATP-dependent nuclease subunit B [Staphylococcus aureus O46]
          Length = 1158

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 112/966 (11%), Positives = 271/966 (28%), Gaps = 141/966 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L + + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D +                                 L          ++ + 
Sbjct: 225  SVTIILTTDGNQDQFS----------------------------LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            N  N    R    ++ +   +          +    N   C   + ++E+   REE   I
Sbjct: 257  NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315

Query: 375  AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            A  + + + +     +  A++  D + A      L  + I  +I     ++      ++ 
Sbjct: 316  ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            SL+  I        +  L+K  +    +     +   + LE   L         +D +  
Sbjct: 376  SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433

Query: 492  VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547
             ++  +      H      R + E   +L   ++D IL     ++   T K    +   +
Sbjct: 434  NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +   +     +T    + L+ +        ++    L  +   ++        +   +++
Sbjct: 494  MEYFELPNQLMTERDELDLNGY-HEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +    ++        +    + I     +++ N   + L G+N+G  P+    +  ++  
Sbjct: 553  VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612

Query: 668  MQS--------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL-RENNIPTIASRWLQ 717
             +         +L+  +    + +A   +      +  + ++ SL   +      S +L 
Sbjct: 613  EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKRNVTFSYSLMGSSGDDKEISPFLN 672

Query: 718  RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758
            ++  L       N+ +                     +    W  +           +  
Sbjct: 673  QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDEEIVADSWLDAYQVI 732

Query: 759  PF-----------------------------PPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                                             L  +    S S  +     P+  YA  
Sbjct: 733  RDSDLLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848
             LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+    
Sbjct: 793  GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850

Query: 849  -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888
                                 I  + L   +     S           +           
Sbjct: 851  VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910

Query: 889  ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939
                  + I I++ G  DRID   K+    V+I DYK+  G            +  Q+  
Sbjct: 911  QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970

Query: 940  EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994
                +    +    + I   K   L Y  + + + K     +  +     +L +K    L
Sbjct: 971  YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026

Query: 995  IEIVTL 1000
              +V  
Sbjct: 1027 SGLVNA 1032


>gi|319744910|gb|EFV97243.1| exonuclease RexB [Streptococcus agalactiae ATCC 13813]
          Length = 1077

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 120/963 (12%), Positives = 259/963 (26%), Gaps = 138/963 (14%)

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            + +  L               L D+   ++T      DL  L             + L  
Sbjct: 97   FEDGQLKAFGRLKQDASFISQLVDLYKELQTANLSILDLKYL-------HSPEKFEDLLA 149

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249
                 ++ L E    +         +  +  L    K  I I+ G T        L+ ++
Sbjct: 150  IFLVVSDLLREGEYDNQSKIAFFTEQVRSGQLDVDLKNTILIVDGFTRFSAEEEALIKSL 209

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
            ++     I+          A +      +     S          +  +      + + +
Sbjct: 210  SSRCQEIIIGAYASQKAYKANF------TNGNIYSAGVDFLRYLATTFQTKPEFILSKWE 263

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
             K    + ++        + S    D +                     + + E  N+++
Sbjct: 264  SKSGFEMISKNIEGKHDFTNSSHILDDT-----------------AKDCITIWECINQKD 306

Query: 370  EAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426
            E   +A A+R  L +  +     ++  D +  +        ++ I         ++    
Sbjct: 307  EVEHVARAIRQKLYQGYRYKDILVLLGDVDSYKLQLSKIFEQYDIPYYFGKAETMAAHPL 366

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
               + SL            +  L K     +    +     A  +   +       +  +
Sbjct: 367  VHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQDDLDYFEAYISYADIKGPKKFFTDFV 426

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
            +  K   L R+ T + +   P      +++               I  L  +        
Sbjct: 427  VGAKKFDLGRLNTIRQSLLTPLESFVKTKKQDG------------IKTLNQFMFFLTQVG 474

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
             + ++S          Q               +E  KT + +  +        K N  E+
Sbjct: 475  LSDNLSRLVGQMSENEQEK------------HQEVWKTFTDILEQFQTIFGQEKLNLDEF 522

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            + ++   +     +        + +         +   +   G+ +  +PK       +S
Sbjct: 523  LSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS 582

Query: 666  RVMQS-------DLNLKTAEKYIGQAAHDFEMA----NGTRHLIYTRSLRENNIPTIASR 714
             + +                       + F          + L+ T     N      S 
Sbjct: 583  DIERQLINDANDTDGHFDIMTQENLKKNHFAALSLFNAAKQELVLTIPQLLNESEDQMSP 642

Query: 715  WLQRLLVLGGT--------------------------------DFFDNLKKRGQC-YLDW 741
            +L  L  +G                                       + K  Q  +   
Sbjct: 643  YLVELRNIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQTFWSVA 702

Query: 742  TRKLDYTTKQPHYKRP---------------KPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
             R L         + P                     E  P   S S +    N+ Y  +
Sbjct: 703  VRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDHPLKLSSSALTTFYNNQYKYF 762

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844
             + +L L+        PD    GT  H +   L+K +  ++  E  +        +  F+
Sbjct: 763  LQYVLGLEEQDSIH--PDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQEDVFK 820

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                          +   I+ +      +  S +         ++ I+   I + G  DR
Sbjct: 821  SLYSEDAESRYSLEILEDIARATATILRQD-SQMTVESEEERFELMID-NTIKINGIIDR 878

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEA-AALKAGSFSQIDCRKVANL 960
            ID L  G + + DYK+    +K   QK    + PQL     A  +     Q     +   
Sbjct: 879  IDRLSDGSLGVVDYKSSA--QKFDIQKFYNGLSPQLVTYIDAISRDKEIEQKPP--IFGA 934

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
             Y+ +      +   +  K  + D+L  K+ + L     L    E+ F+++ +   K ++
Sbjct: 935  MYLHM-----QEPRQDLSKIKNLDDLVTKNHQALT-YKGLFSEAEKEFLANGKYHLKDSL 988

Query: 1021 QSE 1023
             SE
Sbjct: 989  YSE 991


>gi|320546488|ref|ZP_08040803.1| exonuclease RexB [Streptococcus equinus ATCC 9812]
 gi|320448873|gb|EFW89601.1| exonuclease RexB [Streptococcus equinus ATCC 9812]
          Length = 1081

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 132/969 (13%), Positives = 275/969 (28%), Gaps = 147/969 (15%)

Query: 129  DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188
              + ++ L +           K L D+   +++      DL+ L++E+         + L
Sbjct: 95   SHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKSANMTVLDLNGLQSEE-------KQEDL 147

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGSTGSIPATARLMS 247
                    + L+     +         + E+ HL K  +   ++I G T        L+S
Sbjct: 148  VKIFLAVNDILLANQYDTQSKIAFFAKQVESGHLDKALENVALVIDGFTRFSAEEEHLVS 207

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +      A V+ G                      +  T     Q SL   L  L +K 
Sbjct: 208  LLEQKC--AQVIIGTYSSQKAY-------------KATFTAGNVYQASL-DFLRSLAMKF 251

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                            S    ++F           D    ++          A+ +  N+
Sbjct: 252  -------QAQPYYVESSQASHEAFAKLSKLFEAKHDFTTAELTLTDDDKKHYAIWDVINQ 304

Query: 368  REEAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424
            +EE   +A A+R  L E  +     ++  D +  R        ++ I         +S  
Sbjct: 305  KEEVEHVAKAIRHKLYEGYRYKDILVLLGDVDSYRLQIGKIFDKYEIPYYFGKSESMSDH 364

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                 + SL            +  L+K  L      +                       
Sbjct: 365  PLVHFIDSLERVKRYRFRTEDVINLLKTGLYGQFKQD----------------------- 401

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              DL       I            +  ++ + KE    +     Q + PL+     +   
Sbjct: 402  --DLDLFEQYLIYADIKGQSKFAKEFTVNYKGKEHLAFMNQMREQIMVPLLMLFKAQKQL 459

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEH--------RKLPNLWFEEEGKTLSSLFSKIIETGS 596
                  S   +  +T L+ + L ++         ++     E+  +T + + ++      
Sbjct: 460  G-----SSLLEKLMTFLRAISLPDNLEGMVATFPEIEQEKHEQVWRTFTGILNQFQTIFG 514

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
              K +  E + ++   +     +        + +             +   G+ +  +PK
Sbjct: 515  KEKLSLDECLSLVRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNKFVFALGMTQSHFPK 574

Query: 657  NTAKNPFLSRVMQSDLNLKTAE--KYIGQAAH-----DFEMA----NGTRHLIYTRSLRE 705
                   +S   ++ +N  T E  ++   +        F         T  L+ +     
Sbjct: 575  IAQNRSLISDEERAKVNENTDENQRFDVISRENIKKNHFAALSLFNAATEQLVLSLPQIV 634

Query: 706  NNIPTIASRWLQRLLVLG------GTDFFDNLKKRGQCYLDW------------------ 741
            N      S +L  L   G      G +      +    Y                     
Sbjct: 635  NESEDKESSYLAELASFGVPVVKKGRNRLSANLEDIGNYKALLSRVIEVNRLAIEEEREL 694

Query: 742  -----------TRKLDYTTKQPHYKRPKPF---------------PPLEAQPRTYSFSEI 775
                        R L    +    + P                       +P   S S +
Sbjct: 695  SKEEQTFWSVAVRYLRKKLETQGIELPLIKDNMQTKPVASEVIETRFPSDKPINLSSSAV 754

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
                N+ Y  + + +L L  +      PD  + GT  H +   ++K   N+      +  
Sbjct: 755  TTFYNNQYKYFLQYVLGLQEVETIH--PDARNHGTYLHRVFELVMKDESNQPFDTKLNQA 812

Query: 836  KQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
             Q    +  F+              +   I+ S      K  + I+      P ++ I +
Sbjct: 813  IQKTNSEDEFKFVYEEDEESRYSLTVLEDIARST-ASILKNDAQIQVENEEEPFELMIAN 871

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQI 952
              + + G  DR+D L  G + + DYK+  N    +     ++PQL     AL+       
Sbjct: 872  A-VRIRGIIDRVDRLSDGSLGVVDYKSSHNTFDIQKFYNGLNPQLVTYMQALRDKKGRS- 929

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
            +  K+    Y+ +      +   +     + D++ E   K L     L  + E+ ++S+ 
Sbjct: 930  ESDKIFGAMYLHM-----QEPKVDLSSVATTDKILENLSKELRYR-GLFLDEEKGYLSNG 983

Query: 1013 RLSEKSNIQ 1021
                  ++ 
Sbjct: 984  NYHLNDSVY 992


>gi|253998949|ref|YP_003051012.1| DNA helicase/exodeoxyribonuclease V subunit B [Methylovorus sp.
            SIP3-4]
 gi|253985628|gb|ACT50485.1| DNA helicase/exodeoxyribonuclease V, subunit B [Methylovorus sp.
            SIP3-4]
          Length = 925

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 95/636 (14%), Positives = 196/636 (30%), Gaps = 55/636 (8%)

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI-FKLNDFMAI 446
            + A +  +      V+  L       D S G+PL+T        +LL     +  +    
Sbjct: 271  RLAALLDEVLHPVTVRPGLVEADRAYDFSLGLPLNTQPVVHAALALLRIFWQQRIEQQDF 330

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            + L+ +P       E       ++     L    +   ++ L   + +            
Sbjct: 331  SVLLLNPYWSASLGEADARAQLDSRMRQWLPQTVSMMRLLRLIERLQEGETPLP------ 384

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                                I Q +  L      + +       S W       L  +  
Sbjct: 385  --------------------ISQLLQDLRAGWAVREAQPRRQLPSLWAAAFEQLLAALQW 424

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
               R + +  F+ +     SL +           N ++ +  +  L   +  +P++    
Sbjct: 425  PGERSISSHEFQAQRAFSRSLQALARLDVFGDTLNGMQALQRLGELCREQIFQPEVSGDP 484

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA- 685
             + ++G LE      D L + G+N+ VWP     NP +   +Q    +  A+  +  A  
Sbjct: 485  PVQVMGMLEGAAAPLDALWVMGMNDHVWPPPPRPNPLIPATVQRAAGVPNADSAVQTAFA 544

Query: 686  --HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                  +      ++++ +L++      AS  L  + V  G         + Q   +   
Sbjct: 545  RILHQRLLLTAPLIVFSSALKDGERQLRASPILSDIPVFDGD------WAKAQTLAEQLA 598

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
              ++   Q       P    E +  +     +K     P   Y +  L    +       
Sbjct: 599  HGEHAALQVLDDHMAPAV-GEGEHVSGGTGLLKAQAICPAWAYYQYRLGARELKAPVNGL 657

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID-----------SHFEKENLPPHI 852
            +  +RGTL H ++    + R       ++                   +    E L P  
Sbjct: 658  EPAERGTLVHGVLQHFWQGRDLAYLQALDTEELNAALAEAAQQALQDFAAERDETLSPAF 717

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
              + +    K+  ++L  E+  +     +      K+ IE + I L    DRID L  G 
Sbjct: 718  CQLEQERLIKLVSAWLAFEKTREVDFTVLDCERDTKVMIEGVEIRL--VLDRIDQLPDGR 775

Query: 913  VDITDYKTGDNPK--KETAQKLIDPQLSLEAAALK---AGSFSQIDCRKVANLFYIRLKQ 967
            V I DYKTG  P        ++ +PQL + AA        +       +     +  +  
Sbjct: 776  VLIMDYKTGQKPDIRNWAESRITEPQLPVYAAFSLDDGEVAAVSFAMVRTEEHAFSGIAG 835

Query: 968  KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
            +  +  +     + + D    +   +   ++   + 
Sbjct: 836  EEILPALMTLDDRKARDIFDAERFADWHTLLDHWRE 871


>gi|298694206|gb|ADI97428.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            ED133]
          Length = 1158

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 115/966 (11%), Positives = 273/966 (28%), Gaps = 141/966 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L + + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            N  N    R    ++ +   +          +    N   C   + ++E+   REE   I
Sbjct: 257  NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315

Query: 375  AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            A  + + + +     +  A++  D + A      L  + I  +I     ++      ++ 
Sbjct: 316  ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            SL+  I        +  L+K  +    +     +   + LE   L         +D +  
Sbjct: 376  SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433

Query: 492  VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547
             ++  +      H      R + E   +L   ++D IL     ++   T K    +   +
Sbjct: 434  NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +   +     +T    + L+          ++    L  +   ++        +   +++
Sbjct: 494  MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +    ++        +    + I     +++ N   + L G+N+G  P+    +  ++  
Sbjct: 553  VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612

Query: 668  MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717
             +         +L+  +    + +A   +      + ++ ++ SL   +      S +L 
Sbjct: 613  EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLN 672

Query: 718  RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758
            ++  L       N+ +                     +    W              +  
Sbjct: 673  QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732

Query: 759  PF-----------------------------PPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                                             L  +    S S  +     P+  YA  
Sbjct: 733  RDSDLLNQGLDYLMSALTFDNETVKLGETLSKELYGKEINASVSRFEGYQQCPFKHYASH 792

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848
             LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+    
Sbjct: 793  GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850

Query: 849  -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888
                                 I  + L   +     S           +           
Sbjct: 851  VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910

Query: 889  ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939
                  + I I++ G  DRID   K+    V+I DYK+  G            +  Q+  
Sbjct: 911  QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970

Query: 940  EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994
                +    +    + I   K   L Y  + + + K     +  +     +L +K    L
Sbjct: 971  YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026

Query: 995  IEIVTL 1000
              +V  
Sbjct: 1027 SGLVNA 1032


>gi|116628402|ref|YP_821021.1| ATP-dependent exonuclease, subunit B [Streptococcus thermophilus
           LMD-9]
 gi|122267003|sp|Q03IZ7|ADDB_STRTD RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|116101679|gb|ABJ66825.1| DNA helicase/exodeoxyribonuclease V, subunit B [Streptococcus
           thermophilus LMD-9]
          Length = 1106

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 119/934 (12%), Positives = 257/934 (27%), Gaps = 134/934 (14%)

Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
              +  L +             L D+   ++       DL  L         +   + L 
Sbjct: 96  HMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLNQ-------VEKQEDLV 148

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMST 248
                  + L+  +  +            + HL +     + +I G T        L++ 
Sbjct: 149 RIFSAAQDLLLAGDFDNQSKLSAFFKEITSGHLDEALSNTVLVIDGFTRFSAEEEALVAL 208

Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
           + +  +  +V          A +        ++              L  L     +  +
Sbjct: 209 LNDKCHQIVVGTYTSQKAYKANFVYGNVYQASVDF------------LRTLAQTYKVIPD 256

Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
            V       N  + R   + +S     T D   T+  ++           + + E  N++
Sbjct: 257 YVTT-DKEGNRSFARISRLLESRHDFSTVDETVTEQDKH----------ALKVWEVVNQK 305

Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKL---ELTRFGINIDISAGIPLSTTL 425
           EE   +A ++R  L + K+   ++    +             +F I         +S+  
Sbjct: 306 EEVAQVAKSIRQLLADGKRYKDILVLLGDEESYKLHVGQIFRKFDIPYYFGKEESMSSHP 365

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
               + SL            +  LVK  L      E                 +K   D 
Sbjct: 366 LVEFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDLFEYYVNFADIKGRHKFLSDF 425

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
                   +        + +     +     K+    L+  ++  +  +    +      
Sbjct: 426 TANSRDKYNLDQINALRSQLIEPLDKFLNSRKQKGSSLLKKLVVFLEAV-QLPSQMFELS 484

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
              S ++                         E+  K  + +  ++         +  ++
Sbjct: 485 TKASEAE---------------------KEQNEQVWKAFTHILEQVETIFGDESLSVDDF 523

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
           + I+   +     +        + +      +  +   +   G+ +  +PK       LS
Sbjct: 524 LSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKSLLS 583

Query: 666 RVMQSDLNLKTAEKYIGQ--------AAHDFEMAN---GTRHLIYTRSLRENNIPTIASR 714
              +S +N  T E               H   M+     +  L+ ++    N      S 
Sbjct: 584 DEERSRINEATDEHRRLDIVTQINSKRGHFVAMSLFNAASEQLVLSQPQIINESQDDMSV 643

Query: 715 WLQRLLVLGGTDFFDNL---------------------------------------KKRG 735
           +L+ LL LG                                                   
Sbjct: 644 YLKELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVA 703

Query: 736 QCYLD---------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
             YL            + +D  T      +       E +P   S + +    N+ Y  +
Sbjct: 704 VRYLRKRLDKDQVLIPKVIDDVTTTKVDDQVMQLVFPEEEPLKLSATALTTFYNNQYLYF 763

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844
            R +L+L+ +      PD    GT  H +   ++    +++  +           D  FE
Sbjct: 764 LRYVLELEELESIH--PDARHHGTYLHRVFERVMGDSSSESFDDKLEKAIAQTNQDQPFE 821

Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                       R +   I+ S         + ++     +   + +    I +TG  DR
Sbjct: 822 ILYTEDQESRFSRQILEDIARSTASVLRDNAA-VKVEREEVKFDLLLA-NSIKITGIIDR 879

Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
           +D L  G + + DYKTG N      QK    + PQL     AL+     ++D  ++    
Sbjct: 880 VDRLTDGALGVVDYKTGKN--VFDIQKFYNGLSPQLVTYLEALRQT--YKVDADQLFGAM 935

Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
           Y+ +           +  +   ++L+ ++ K L 
Sbjct: 936 YLHM------QVPQLNLAQIGLEKLAAQAHKELT 963


>gi|55821689|ref|YP_140131.1| ATP-dependent exonuclease subunit B [Streptococcus thermophilus LMG
           18311]
 gi|81560166|sp|Q5M2T6|ADDB_STRT2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|55737674|gb|AAV61316.1| ATP-dependent exonuclease, subunit B [Streptococcus thermophilus
           LMG 18311]
          Length = 1106

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 119/934 (12%), Positives = 256/934 (27%), Gaps = 134/934 (14%)

Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
              +  L +             L D+   ++       DL  L         +   + L 
Sbjct: 96  HMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQ-------VEKQEDLV 148

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMST 248
                  + L+  +  +            + HL +     + +I G T        L++ 
Sbjct: 149 RIFSAAQDLLLAGDFDNQSKLSAFFKEITSGHLDEALSNTVLVIDGFTRFSAEEEALVAL 208

Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
           + +  +  +V          A +        ++              L  L     +  +
Sbjct: 209 LNDKCHQIVVGTYTSQKAYKANFVYGNVYQASVDF------------LRTLAQTYKVIPD 256

Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
            V       N  + R   + +S     T D   T+  ++           + + E  N++
Sbjct: 257 YVTT-DKEGNLSFARISRLLESRHDFSTVDETVTEQDKH----------ALKVWEVVNQK 305

Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKL---ELTRFGINIDISAGIPLSTTL 425
           EE   +A ++R  L + K+   ++    +             +F I         +S+  
Sbjct: 306 EEVAQVAKSIRQLLADGKRYKDILVLLGDEESYKLHVGQIFRKFDIPYYFGKEESMSSHP 365

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
               + SL            +  LVK  L      E                 +K   D 
Sbjct: 366 LVEFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDLFEYYVNFADIKGRHKFLSDF 425

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
                   +        + +     +     K+    L+  ++  +  +    +      
Sbjct: 426 TANSRDKYNLDQINALRSQLIEPLDKFLNSRKQKGSSLLKKLVVFLEAV-QLPSQMFELS 484

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
              S ++                         E+  K  + +  ++         +  ++
Sbjct: 485 TKASEAE---------------------KEQNEQVWKAFTHILEQVETIFGDESLSVDDF 523

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
           + I+   +     +        + +      +  +   +   G+ +  +PK       LS
Sbjct: 524 LSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKSLLS 583

Query: 666 RVMQSDLNLKTAEKYIGQ--------AAHDFEMAN---GTRHLIYTRSLRENNIPTIASR 714
              +S +N  T E               H   M+     +  L+ ++    N      S 
Sbjct: 584 DEERSRINEATDEHRRLDIVTQINSKRGHFVAMSLFNAASEQLVLSQPQIINESQDDMSV 643

Query: 715 WLQRLLVLGGTDFFDNL---------------------------------------KKRG 735
           +L+ LL LG                                                   
Sbjct: 644 YLKELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVA 703

Query: 736 QCYLD---------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
             YL            + +D  T      +       E +P   S + +    N+ Y  +
Sbjct: 704 VRYLRKRLDKDQVLIPKVIDDVTTTKVDDQVMQLVFPEEEPLKLSATALTTFYNNQYLYF 763

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844
            R +L+L+ +      PD    GT  H +   ++    +++  +           D  FE
Sbjct: 764 LRYVLELEELESIH--PDARHHGTYLHRVFERVMGDSSSESFDDKLEKAIAQTNQDQPFE 821

Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                       R +   I+ S         +   +    +   + +    I +TG  DR
Sbjct: 822 ILYTEDQESRFSRQILEDIARSTASVLRDNAAVKVECE-EVKFDLLLA-NSIKITGIIDR 879

Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
           +D L  G + + DYKTG N      QK    + PQL     AL+     ++D  ++    
Sbjct: 880 VDRLTDGALGVVDYKTGKN--VFDIQKFYNGLSPQLVTYLEALRQT--YKVDADQLFGAM 935

Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
           Y+ +           +  +   ++L+ ++ K L 
Sbjct: 936 YLHM------QVPQLNLSQIGLEKLAAQAHKELT 963


>gi|172056767|ref|YP_001813227.1| ATP-dependent nuclease subunit B [Exiguobacterium sibiricum 255-15]
 gi|251764589|sp|B1YKM7|ADDB_EXIS2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|171989288|gb|ACB60210.1| ATP-dependent nuclease subunit B [Exiguobacterium sibiricum 255-15]
          Length = 1143

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 116/1021 (11%), Positives = 271/1021 (26%), Gaps = 155/1021 (15%)

Query: 60  LRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELAR--- 114
           L    I+   ++  + P I  +   V ++ + ++      +P +S + R  ++ L R   
Sbjct: 17  LIERVIDQLTEQP-LGPSIYFI---VPDQMSFEMERRIATDPRLSGLVRMEVMSLRRFAF 72

Query: 115 -LILIWRNKLPDIIKDLYPESPLSLPISPAN-----------AIWLAKNLADIIDIIETE 162
            +I  + N++   + +   +  L   +  A                 K L ++I   +  
Sbjct: 73  HMIRDYGNQVIPFLDETGTQLLLRQVVEEAEEELKIFKRTKNMPGFYKGLDELIASFKRS 132

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               + L  +             + L +  + +TER      S    +         E L
Sbjct: 133 LVNPDMLRQISGA--SPERSPKLNDLALIYERFTER-----ISDKALHADDYFTTLIELL 185

Query: 223 MKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
            K     +   + G         +++  +        +   LD                 
Sbjct: 186 PKADLSDVSVFVDGFYEFSLQEQQVLLRLMELTKDMHLSFTLDVE--------------- 230

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
              +  +     Q    +L++ +  ++   + +                         M 
Sbjct: 231 DVYTKQSEFGVSQRCYMQLIEQMKERQIAHEDIY-----------YGQTVKFQSTGLRML 279

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISI---AIALRMSLDENKKKSALITADRN 397
              +L    P   +  + V +  A N + E  +    AI L        K  A +     
Sbjct: 280 EQALLSPGYPPTDEEVTGVTVSAAVNRQVETEAAVRKAIQLVRHDGYRFKDIAFLVRHLE 339

Query: 398 LAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
                ++     + I   +     +       ++ ++L  +       ++  L+K  L  
Sbjct: 340 PYADHLERAFQLYDIPYFLDQRESMVHHPIVELVHAVLEIVMTGYREESVFRLLKTELI- 398

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
              P +    A + LE   L               +  R+A + + T     +     E 
Sbjct: 399 -PLPAEDPRLALDRLETFVLERGIKGSMWKKPWQ-LKRRLADEISLTDAELQEELELNEW 456

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
           ++  V  ++ + +      T      +    L     T       Q              
Sbjct: 457 RQFLVEAIEPLEKRFKASKTMSEYTRALYRFLEEHHMTDRLTVWKQQALEVNELSQAR-E 515

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            ++  + +  LF ++             ++ ++   ++             +     +  
Sbjct: 516 HDQVYEAVLLLFEQLEAAAPEATLTTELFVQMVETGLESLRFSLVPPSLDQVIATDYVRG 575

Query: 637 RLLNFDTLILGGLN-------EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
           RL     + L G N       E      +  +          +   + + +  +  + ++
Sbjct: 576 RLQQVKVVFLLGANDGLIPLVEDQSKLLSEGDHDFLHDQGIPVGKASLDVFDDELYYLYQ 635

Query: 690 MANGTRH-LIYTRSL-RENNIPTIASRWLQRLLVLGGTDF-------------------- 727
                   L  + +L  E+      +  ++++      D                     
Sbjct: 636 GVTAPSESLHISYALVDEDGKALQPASIVKQIKHQLLQDRPVKTYFAEAGDHAPDDQLQF 695

Query: 728 --------------FDNLKKRGQCYLDWT----RKLDYTTKQPHYK----------RPKP 759
                            L++R      W     R L+    +              + +P
Sbjct: 696 VTSPERAAAAAAIELRRLQRRYPIQPSWFDVYNRLLENGRGRERMALFSNALFYQNQAEP 755

Query: 760 FPPLEAQP-----RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
            P   A+         S S  +      Y  +AR  L+L          +  D G LFH 
Sbjct: 756 LPEDLARNLYGDTIKASVSRFETYNACSYKHFARYGLRLKERK--LYKFEAPDIGNLFHG 813

Query: 815 IITEL----------IKKRINKNTPEINHLMKQIIDSHFEKENL-PPHIDIIWRHLFHKI 863
            + +L           ++  +++   +     + +    +   L   +     +     +
Sbjct: 814 ALNDLSMNIKASGKRWRELDDQSCSNLAKEAVEKVTPEIQNAILMSSNRFGYIKKKLTDV 873

Query: 864 SHSFLEHE--EKIQSSIEKIFVNIPA--------KMAIESI-GIHLTGFADRIDLL--KS 910
                +    +  +S  E     I          +  +     I  TG  DR+D      
Sbjct: 874 VEQTAKMLVKQAERSEFEPDLFEISFGNAMFPPLRFTLPDGTEIEFTGRIDRVDQATIGD 933

Query: 911 G-FVDITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQ 967
             +V I DYK+             +  Q+ L     ++          K A   Y  +K 
Sbjct: 934 QLYVRIVDYKSSAKELDFAEIYYGLAIQMLLYLKTVVEQSEVLFNQQAKPAGALYFHVKN 993

Query: 968 K 968
            
Sbjct: 994 P 994


>gi|260577891|ref|ZP_05845822.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734]
 gi|258603985|gb|EEW17231.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734]
          Length = 1136

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 128/1082 (11%), Positives = 284/1082 (26%), Gaps = 150/1082 (13%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGKKSTILPI---IKSLGDVVEEKFTADLLLSYNLNP 101
            + +  + P+K +   +R+   +    +         ++S+       + +   L     P
Sbjct: 97   SEIMFFAPSKESATAVRAALYQRMAGEGDYAASGTFVRSVHSWAFAFYRSVQTLRGQKQP 156

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
                  RL+  A   +  R  L    +D     P ++  + + A   A+ L D++     
Sbjct: 157  ------RLITGAEHDMQIREILRGTEEDGNRYWPTNVVPALSYA-GFAQQLRDLLLRATE 209

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE- 220
                 + L  L  E     W  A  F +   +   +RL    + +      A + A  + 
Sbjct: 210  RGLSAQQLQQLGVEHDRPMWEAAGRFQQEYQQV--QRLSRSESLNASELLHATLAAFEKP 267

Query: 221  ------HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
                     +     +++  +    PA+ARL+ +      G   L   D       +   
Sbjct: 268  EGEQLVEQQREKVKLLLVDDAHNLDPASARLIESF--MVPGTRTLIAGDPDQCVFHFRGA 325

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             E   +  S +  +      S               + LG   + +  RS          
Sbjct: 326  DEAFLDSYSQDPDHRVVLSASYRLTPPAAQSVNALRRHLGAQPSRVELRSADSGDFTSGG 385

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSAL 391
             T                      V +     E  E + I   +R +  E        A+
Sbjct: 386  ST------------------GAETVQVTITPTETAERLKIVDVVRRAHIEQQVAWDDIAV 427

Query: 392  ITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            I        RV+  L  +G+ + +    + L+    + +L     A ++      + +++
Sbjct: 428  IVRGTGSIARVRRTLMAYGVPVKVDPTSVVLAEQPLARMLLLAAEASYRTLTVAEMHSVL 487

Query: 451  KH------PLAKFGFPEKYLSRAKNALELVA---LRGNKNSYDIMDLKSLVLDRIATQKN 501
            +       P+             ++A            +      D +        T+  
Sbjct: 488  EGSVGGADPVMVRRVHRAVALAIRSAQMAGQVAGQAAGQTLRAHEDGRPFQAADYVTELL 547

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC-GNLSISDWTKLTVTC 560
            N         ++         ++  +   +        N   T      I   TKL +  
Sbjct: 548  NHPGDPANQWITSHCGPREKEVIQRVSTVLEAGRQAWKNNQGTEMVLWKIWQATKLDMHL 607

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                              +   +L  +     E     +       ++  + +       
Sbjct: 608  RAQALKGGSLGAQADADLDAVMSLFDILGDFAERNPHAQME-SFVENLRAQKVPTGGRDQ 666

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-- 678
            +  ++  + IL    +    +  + + G+ EG WP          ++   DL  +  +  
Sbjct: 667  RGVRAGAVEILPAHAAAGRQWKVVAIAGVQEGEWPTGPTVGGLFGQLELVDLLDRGIDPS 726

Query: 679  -------KYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT---- 725
                     I +    F +A    T  +  T      +   + SR++  + V        
Sbjct: 727  VPVARINDAIEEERRLFLLALSRATDSVHVTCVRNSGDEALVPSRFIAEMGVEPTELATA 786

Query: 726  ---------------------------------------DFFDNLKKRGQCYLDWTRKL- 745
                                                   D   +  + G       R L 
Sbjct: 787  DEAEGAEEAETSVGRKVSGSGAGALPRVLAIDSLLAELRDAVTDPNRPGHERRAAARNLA 846

Query: 746  ---------DYTTKQPHYKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                                P     +        S S+++         +      +  
Sbjct: 847  KMARAGVYGAAPEDWWGTAEPSTDARVLAGDKIRLSPSKLESWNTCALRAFLDSNGGVSE 906

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                    +    G   H I  ++++        E    +++I+    +    P   +  
Sbjct: 907  ------STEAMRVGIFIHAIAEQIVQ---GMELDEAQLAVREILPHVLD---GPAWKNTQ 954

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGIHLTGFADRIDLLK-S 910
                +    +         +    ++      +  +    + + + L+G AD +      
Sbjct: 955  TVERWEGGVNKLHGFIAGYRDKEFELETERTLRARVGQTPDGVEVTLSGRADLLATNPED 1014

Query: 911  GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL----KAGSFSQIDCRKVANLFYIRLK 966
            G   + D+KTG     + A     PQLS     L    ++G  +Q      A L Y    
Sbjct: 1015 GLTKVIDFKTGKTAVTKNAAA-ESPQLSAYQFLLPLNERSGGSAQKYRPGGAALVY---- 1069

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026
               +   IT   +    +E        L+EI            ++L          ++  
Sbjct: 1070 PGTQTKTITERNQAELTEEQLSGVHDQLMEIA-----PVTAGPTYLATPNDGCRHCDFKT 1124

Query: 1027 LA 1028
            + 
Sbjct: 1125 IC 1126


>gi|329733942|gb|EGG70264.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            21193]
          Length = 1158

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 113/967 (11%), Positives = 269/967 (27%), Gaps = 143/967 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L   + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAIS 373
            N  N    R           +  D+++ +   + +   +      + ++E+   REE   
Sbjct: 257  NELNISIERQYFKQLY--RFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINE 314

Query: 374  IAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            IA  + + + +     +  A++  D + A      L  + I  +I     ++      ++
Sbjct: 315  IARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMI 374

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             SL+  I        +  L+K  +    +     +   + LE   L         +D + 
Sbjct: 375  RSLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDEL 432

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCG 546
              ++  +      H      R + E   +L   ++D IL     ++   T K    +   
Sbjct: 433  FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYE 492

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
            ++   +     ++    + L+          ++    L  +   ++        +   ++
Sbjct: 493  SMEYFELPNQLMSERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFL 551

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            ++    ++        +    + I     +++ N   + L G+N+G  P+    +  ++ 
Sbjct: 552  EVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITD 611

Query: 667  VMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSL-RENNIPTIASRWL 716
              +             T++      A      M    + + ++ SL   +      S +L
Sbjct: 612  EEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRARQDVTFSYSLMGSSGDDKEISPFL 671

Query: 717  QRLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRP 757
             ++  L       N+ +                     +    W              + 
Sbjct: 672  TQIQALFNQLEITNIPRYHEVAPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQV 731

Query: 758  KPFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYAR 788
                                                 +    S S  +     P+  YA 
Sbjct: 732  IRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYAS 791

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
              LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+   
Sbjct: 792  HGLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNKALEEILP 849

Query: 849  --------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK---------- 888
                                  I  + L   +     S           +          
Sbjct: 850  KVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELI 909

Query: 889  ----MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLS 938
                   + I I++ G  DRID   K+    V+I DYK+  G            +  Q+ 
Sbjct: 910  AQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMM 969

Query: 939  LEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKN 993
                 +    +    + I   K   L Y  + + + K     +  +     +L +K    
Sbjct: 970  TYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK-- 1025

Query: 994  LIEIVTL 1000
            L  +V  
Sbjct: 1026 LSGLVNA 1032


>gi|323440878|gb|EGA98586.1| ATP-dependent nuclease subunit B [Staphylococcus aureus O11]
          Length = 1158

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 115/966 (11%), Positives = 273/966 (28%), Gaps = 141/966 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L + + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            N  N    R    ++ +   +          +    N   C   + ++E+   REE   I
Sbjct: 257  NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315

Query: 375  AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            A  + + + +     +  A++  D + A      L  + I  +I     ++      ++ 
Sbjct: 316  ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            SL+  I        +  L+K  +    +     +   + LE   L         +D +  
Sbjct: 376  SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433

Query: 492  VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547
             ++  +      H      R + E   +L   ++D IL     ++   T K    +   +
Sbjct: 434  NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +   +     +T    + L+ +        ++    L  +   ++        +   +++
Sbjct: 494  MEYFELPNQLMTERDELDLNGY-HEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +    ++        +    + I     +++ N   + L G+N+G  P+    +  ++  
Sbjct: 553  VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612

Query: 668  MQS--------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL-RENNIPTIASRWLQ 717
             +         +L+  +    + +A   +      +  + ++ SL   +      S +L 
Sbjct: 613  EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKRNVTFSYSLMGSSGDDKEISPFLN 672

Query: 718  RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758
            ++  L       N+ +                     +    W              +  
Sbjct: 673  QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732

Query: 759  PF-----------------------------PPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                                             L  +    S S  +     P+  YA  
Sbjct: 733  RDSDLLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848
             LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+    
Sbjct: 793  GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850

Query: 849  -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888
                                 I  + L   +     S           +           
Sbjct: 851  VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910

Query: 889  ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939
                  + I I++ G  DRID   K+    V+I DYK+  G            +  Q+  
Sbjct: 911  QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970

Query: 940  EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994
                +    +    + I   K   L Y  + + + K     +  +     +L +K    L
Sbjct: 971  YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKYK--L 1026

Query: 995  IEIVTL 1000
              +V  
Sbjct: 1027 SGLVNA 1032


>gi|68536699|ref|YP_251404.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
            K411]
 gi|68264298|emb|CAI37786.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
            K411]
          Length = 1104

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 128/1082 (11%), Positives = 283/1082 (26%), Gaps = 150/1082 (13%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGKKSTILPI---IKSLGDVVEEKFTADLLLSYNLNP 101
            + +  + P+K +   +R+   +    +         ++S+       + +   L     P
Sbjct: 65   SEIMFFAPSKESATAVRAALYQRMAGEGDYAASGTFVRSVHSWAFAFYRSVQTLRGQKQP 124

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
                  RL+  A   +  R  L    +D     P ++  + + A   A+ L D++     
Sbjct: 125  ------RLITGAEHDMQIREILRGTEEDGNRYWPTNVVPALSYA-GFAQQLRDLLLRATE 177

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE- 220
                 + L  L  E     W  A  F +   +   +RL    + +      A + A  + 
Sbjct: 178  RGLSAQQLQQLGVEHDRPMWEAAGRFQQEYQQV--QRLSRSESLNASELLHATLAAFEKP 235

Query: 221  ------HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
                     +     +++  +    PA+ARL+ +      G   L   D       +   
Sbjct: 236  EGEQLVEQQREKVKLLLVDDAHNLDPASARLIESF--MVPGTRTLIAGDPDQCVFHFRGA 293

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             E   +  S +  +      S               + LG   + +  RS          
Sbjct: 294  DEAFLDSYSQDPDHRVVLSASHRLTPPAAQSVNALRRHLGAQPSRVELRSADSGDFTSGG 353

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSAL 391
             T                      V +     E  E + I   +R +  E        A+
Sbjct: 354  ST------------------GAETVQVTITPTETAERLKIVDVVRRAHIEQQVAWDDIAV 395

Query: 392  ITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            I        RV+  L  +G+ + +    + L+      +L     A ++      + +++
Sbjct: 396  IVRGTGSIARVRRTLMAYGVPVKVDPTSVVLAEQPLVRMLLLAAEASYRPLTVAEMQSVL 455

Query: 451  KH------PLAKFGFPEKYLSRAKNALELVA---LRGNKNSYDIMDLKSLVLDRIATQKN 501
            +       P+             ++A            +      D +        T+  
Sbjct: 456  EGSVGGADPVMVRRVHRAVALAIRSAQMAGQVAGQAAGQTLRAHEDGRPFQAADYVTELL 515

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC-GNLSISDWTKLTVTC 560
            N         ++         ++  +   +        N   T      I   TKL +  
Sbjct: 516  NHPEDPANQWITSHCGPREKEVIQRVSTVLEAGRQAWKNNQGTEMVLWKIWQATKLDMHL 575

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                              +   +L  +     E     +       ++  + +       
Sbjct: 576  RAQALKGGSLGAQADADLDAVMSLFDILGDFAERNPHAQME-SFVENLRAQKVPTGGRDQ 634

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-- 678
            +  ++  + IL    +    +  + + G+ EG WP          ++   DL  +  +  
Sbjct: 635  RGVRAGAVEILPAHAAAGRQWKVVAIAGVQEGEWPTGPTVGGLFGQLELVDLLDRGIDPS 694

Query: 679  -------KYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT---- 725
                     I +    F +A    T  +  T      +   + SR++  + V        
Sbjct: 695  VPVARINDAIEEERRLFLLALSRATDSVHVTCVRNSGDEALVPSRFIAEMGVEPTELATA 754

Query: 726  ---------------------------------------DFFDNLKKRGQCYLDWTRKL- 745
                                                   D   +  + G       R L 
Sbjct: 755  DEAEGAEEAETSVGRKVSGSGAGALPRVLAIDSLLAELRDAVTDPNRPGHERRAAARNLA 814

Query: 746  ---------DYTTKQPHYKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                                P     +        S S+++         +      +  
Sbjct: 815  KMARAGVYGAAPEDWWGTAEPSTDARVLAGDKIRLSPSKLESWNTCALRAFLDSNGGVSE 874

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                    +    G   H I  ++++        E    +++I+    +    P   +  
Sbjct: 875  ------STEAMRVGIFIHAIAEQIVQ---GMELDEAQLAVREILPHVLD---GPAWKNTQ 922

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGIHLTGFADRIDLLK-S 910
                +    +         +    ++      +  +    + + + L+G AD +      
Sbjct: 923  TVERWEGGVNKLHGFIAGYRDKEFELETERTLRARVGQTPDGVEVTLSGRADLLATNPED 982

Query: 911  GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL----KAGSFSQIDCRKVANLFYIRLK 966
            G   + D+KTG     + A     PQLS     L    ++G  +Q      A L Y    
Sbjct: 983  GLTKVIDFKTGKTAVTKNAAA-ESPQLSAYQFLLPLNERSGGSAQKYRPGGAALVY---- 1037

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026
               +   IT   +    +E        L+EI            ++L          ++  
Sbjct: 1038 PGTQTKTITERNQAELTEEQLSGVHDQLMEIA-----PVTAGPTYLATPNDGCRHCDFKT 1092

Query: 1027 LA 1028
            + 
Sbjct: 1093 IC 1094


>gi|311739799|ref|ZP_07713633.1| probable helicase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304872|gb|EFQ80941.1| probable helicase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 1035

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 118/1048 (11%), Positives = 266/1048 (25%), Gaps = 168/1048 (16%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
              ++  R    +P   + + +  P+K +   LR E  E     +    +++S+  +    
Sbjct: 53   HALDKARQTGADP---SGILVIAPSKESGARLRRELSERLEDYAAQTSMVRSVHSLAFAL 109

Query: 89   FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
                               RL+  A    + R  L    +D +   P  +       +  
Sbjct: 110  LRTTTEEEL----------RLITGAEQDAVIRELLTGQAEDGHGSWPAEM-RPALEYVGF 158

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
            A+ L D +           DL  L  E     W  A +FL+   +    +L+    S   
Sbjct: 159  ARQLRDFLLRSIERGLGPGDLERLGAEHGRPMWSAAGEFLREYERV---QLLSRAHSYSA 215

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
               +  +    + L +     II+  +    P   +L+  +A  P   +V+ G D     
Sbjct: 216  AELVTAVLQRPQLLREHPFHTIIVDDAQLLDPTAGKLIREMA--PQANLVVVGGDADQSV 273

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +   + +      ++        +                                  
Sbjct: 274  FAFRGASSRFLRDFPADHDIELTEPHR--------------------------------- 300

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
                                  +I      +  + A+  R   +   +  R         
Sbjct: 301  ---------------TPSPACISIVDSDGRLRDVVANTVRRRHLEDGVPWRDIA------ 339

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
              ++ +  ++ +  +  L            + L+     S +   L A+ +      +  
Sbjct: 340  -VIVRSTGDIGQMRRTLLAAGVPVHISPTDVVLAEQRLVSAVLLALRALEEDLSNSELEE 398

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            L+  P+                      RG      I  L+ L+   +         P +
Sbjct: 399  LLTGPVGGADPVTLRRLIRGLRRWDSTTRG------IDSLRGLLYGEL---------PDF 443

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
              +L+E +  +   +   +      L +  + +       S ++                
Sbjct: 444  NGQLTEREYSILERVRAVLSAGRDALASGDSVEEVLWAVWSATELDNRLQASALRGGATG 503

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
             +   +L         +  + +     S           I  + +       +      +
Sbjct: 504  SQADRDLDAMMALFDAAGDYVERRPDSSLRAF----LTHITEQELPTGVRDRRTAIPQAV 559

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             IL    +    +DT+I+ G  EG WP          +    DL     +          
Sbjct: 560  EILTAHGAVGREWDTVIVAGAQEGSWPSLGETGSIFGQEDLIDLLDHDIDPDTPVSHVAS 619

Query: 680  YIGQAAHDFEMANGTRHLIYTRSL---RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
             + +    F +A          +     E +  +  SR++      G        +++ +
Sbjct: 620  RLAEERRLFHVATTRHRQRLLIAAVENPEGDTVSEPSRFISEFAGRGVDVPGQAARRQAK 679

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPP----LEAQPRTYSFSEIKQLIN------------ 780
              L  T+             P                 S       +             
Sbjct: 680  RALRRTQLPRELGLDVPEPAPVSLRDGLEVDPLDVAVLSVPAFVAQLRRVVTNQESGEVE 739

Query: 781  -------------------DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                                P   ++ R +  +   H       +    L +  +  ++ 
Sbjct: 740  RKQAARQLARLAAADIPGAHPEQWWSARSVAAEMPLHTSGSLSPSRVEALLNCPLKAVLG 799

Query: 822  KRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI--------------- 863
                        +   +         +        ++    F +I               
Sbjct: 800  NVAEDPSTEEHLLRGTLAHAFFEAIGRGMDAEKAKLLVMEAFERIQDVPQWQLRFRLDEF 859

Query: 864  ---SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
                    E   + + + E   V IP  + + S  + + G+ DR+     G   + D KT
Sbjct: 860  STLLDRAREWARQSEVNQELAGVEIPVGVRV-SEEVRIGGYMDRLLRDGEGNYLVVDLKT 918

Query: 921  GDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL---FYIRLKQKFKIDCITN 976
            G + P K+  +  +  QL     AL  G+F          +     + +        I  
Sbjct: 919  GRSKPAKKEGEDHV--QLMTYQLALAHGAFDGHQVHDGEGMPRQGGVLVYPGATTKKIGE 976

Query: 977  DKKKYSADELSEKSLKNLIEIVTLLQNG 1004
              +   + E  E+    L  +V  ++  
Sbjct: 977  IWQSDKSPEALEEFAALLPPLVEEMRGP 1004


>gi|15923956|ref|NP_371490.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            Mu50]
 gi|15926555|ref|NP_374088.1| hypothetical protein SA0827 [Staphylococcus aureus subsp. aureus
            N315]
 gi|148267400|ref|YP_001246343.1| ATP-dependent nuclease subunit AddB [Staphylococcus aureus subsp.
            aureus JH9]
 gi|150393453|ref|YP_001316128.1| ATP-dependent nuclease subunit AddB [Staphylococcus aureus subsp.
            aureus JH1]
 gi|156979292|ref|YP_001441551.1| hypothetical protein SAHV_0961 [Staphylococcus aureus subsp. aureus
            Mu3]
 gi|253316127|ref|ZP_04839340.1| hypothetical protein SauraC_08282 [Staphylococcus aureus subsp.
            aureus str. CF-Marseille]
 gi|255005756|ref|ZP_05144357.2| hypothetical protein SauraM_04785 [Staphylococcus aureus subsp.
            aureus Mu50-omega]
 gi|257795299|ref|ZP_05644278.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9781]
 gi|258406948|ref|ZP_05680101.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9763]
 gi|258421916|ref|ZP_05684837.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9719]
 gi|258441525|ref|ZP_05690885.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8115]
 gi|258447224|ref|ZP_05695373.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A6300]
 gi|258449984|ref|ZP_05698082.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A6224]
 gi|258455497|ref|ZP_05703456.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A5937]
 gi|269202581|ref|YP_003281850.1| exonuclease RexB [Staphylococcus aureus subsp. aureus ED98]
 gi|282893993|ref|ZP_06302224.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8117]
 gi|282927189|ref|ZP_06334811.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A10102]
 gi|295405772|ref|ZP_06815581.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8819]
 gi|296276178|ref|ZP_06858685.1| ATP-dependent helicase/deoxyribonuclease subunit B [Staphylococcus
            aureus subsp. aureus MR1]
 gi|297245363|ref|ZP_06929234.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8796]
 gi|81705954|sp|Q7A6H5|ADDB_STAAN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|81781870|sp|Q99VC4|ADDB_STAAM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|251764610|sp|A7X0I1|ADDB_STAA1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|251764611|sp|A6U073|ADDB_STAA2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|251764612|sp|A5IRE4|ADDB_STAA9 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|13700770|dbj|BAB42066.1| SA0827 [Staphylococcus aureus subsp. aureus N315]
 gi|14246735|dbj|BAB57128.1| similar to ATP-dependent nuclease subunit B [Staphylococcus aureus
            subsp. aureus Mu50]
 gi|147740469|gb|ABQ48767.1| DNA helicase/exodeoxyribonuclease V, subunit B [Staphylococcus aureus
            subsp. aureus JH9]
 gi|149945905|gb|ABR51841.1| ATP-dependent nuclease subunit AddB [Staphylococcus aureus subsp.
            aureus JH1]
 gi|156721427|dbj|BAF77844.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257789271|gb|EEV27611.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9781]
 gi|257841487|gb|EEV65928.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9763]
 gi|257842249|gb|EEV66677.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9719]
 gi|257852315|gb|EEV76241.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8115]
 gi|257853972|gb|EEV76926.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A6300]
 gi|257856904|gb|EEV79807.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A6224]
 gi|257862315|gb|EEV85084.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A5937]
 gi|262074871|gb|ACY10844.1| exonuclease RexB [Staphylococcus aureus subsp. aureus ED98]
 gi|282590878|gb|EFB95953.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A10102]
 gi|282763479|gb|EFC03608.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8117]
 gi|285816645|gb|ADC37132.1| ATP-dependent nuclease, subunit B [Staphylococcus aureus 04-02981]
 gi|294969207|gb|EFG45227.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8819]
 gi|297177666|gb|EFH36916.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8796]
 gi|312829363|emb|CBX34205.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            ECT-R 2]
 gi|315130453|gb|EFT86440.1| hypothetical protein CGSSa03_03493 [Staphylococcus aureus subsp.
            aureus CGS03]
 gi|329728303|gb|EGG64742.1| helicase-exonuclease AddAB, AddB subunit [Staphylococcus aureus
            subsp. aureus 21172]
          Length = 1157

 Score =  172 bits (436), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 113/967 (11%), Positives = 273/967 (28%), Gaps = 143/967 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L   + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAIS 373
            N  N    R           +  D+++ +   + +   +      + ++E+   REE   
Sbjct: 257  NELNISIERQYFNQLY--RFNNQDLKHLEQEFDVLQINRVACQGHINILESATMREEINE 314

Query: 374  IAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            IA  + + + +     +  A++  D + A      L  + I  +I     ++      ++
Sbjct: 315  IARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMI 374

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             SL+  I        +  L+K  +    +     +   + LE   L         +D + 
Sbjct: 375  RSLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDEL 432

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCG 546
              ++  +      H      R + E   +L   ++D IL     ++   T K    +   
Sbjct: 433  FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYE 492

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
            ++   +     +T    + L+          ++    L  +   ++        +   ++
Sbjct: 493  SMEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFL 551

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            ++    ++        +    + I     +++ N   + L G+N+G  P+    +  ++ 
Sbjct: 552  EVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITD 611

Query: 667  VMQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWL 716
              +         +L+  +    + +A   +      +  + ++ SL   +      S +L
Sbjct: 612  EEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFL 671

Query: 717  QRLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRP 757
             ++  L       N+ +                     +    W              + 
Sbjct: 672  NQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQV 731

Query: 758  KPFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYAR 788
                                                 +    S S  +     P+  YA 
Sbjct: 732  IRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYAS 791

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
              LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+   
Sbjct: 792  HGLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILP 849

Query: 849  --------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK---------- 888
                                  I  + L   +     S           +          
Sbjct: 850  KVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELI 909

Query: 889  ----MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLS 938
                   + I I++ G  DRID   K+    V+I DYK+  G            +  Q+ 
Sbjct: 910  AQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMM 969

Query: 939  LEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKN 993
                 +    +    + I   K   L Y  + + + K    ++  +     +L +K    
Sbjct: 970  TYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFK-- 1025

Query: 994  LIEIVTL 1000
            L  +V  
Sbjct: 1026 LSGLVNA 1032


>gi|311111763|ref|YP_003982985.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931]
 gi|310943257|gb|ADP39551.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931]
          Length = 1172

 Score =  172 bits (436), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 145/1169 (12%), Positives = 286/1169 (24%), Gaps = 210/1169 (17%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
            AP +     +I A ++      F     +P   A + +  PT+     +R E      + 
Sbjct: 9    APGTGKTERVITAAVD------FLNAGGDP---ARLLVLTPTRAGATRVRDELARRIDRS 59

Query: 72   STILPI----IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
             +  P       +   +     +  L         +S  ++ + +  ++   R      +
Sbjct: 60   MSTAPTRAWAAYAFDLLRRAHVSGLLPGVEFAPKLLSGPEQDVMIGEILAGHREGKGAAV 119

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
            +        +            + + D  D I       EDL  L        W   A  
Sbjct: 120  R------WPADLHEALGTRGFRQEIRDFFDRIAEYALTAEDLENLAQTLDRPAWHSVAQL 173

Query: 188  LKIASKYWTERLVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                 +    RL   NA  P           L   E     +     I+I  +    P+ 
Sbjct: 174  YTEYQQI--RRLRAPNAYDPAALIHEACAFLLANPEYLREERARFDLILIDDAQELSPSV 231

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST-------------NITSSNTTYS 289
             RLM  +     G  VL         A+       +                 +     +
Sbjct: 232  YRLMRILVGREPGQ-VLATYTGDQREAVEAAFAPSARVLMTCCTETVVQGFRGARPDLAA 290

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR--------- 340
            T PQ       + L         +      +  R  VI+    P +              
Sbjct: 291  TLPQIFPELQREELKTSYCMNAPITQAWRNIARRLPVIANVPTPREPQAAPSKYEESALL 350

Query: 341  --NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395
              + D       +  +    V      + ++EA  +A  L            +SA+I   
Sbjct: 351  RLSDDGDLLDPRHSDELPEGVFGYLLGSPQDEANQVAQLLLEDYLYRGAAYARSAIIVRS 410

Query: 396  RNLARRVKLELTRFGIN-IDISAGIPLSTTLHSS-ILTSLLNAIFKLNDFMAIATLVKH- 452
                 R +  L   GI  +  +A +P+         L +L   ++          L  H 
Sbjct: 411  GTEVARFRRVLAASGIPTVTGAALVPVRDEPAVRPFLDALSLLVYARQQSADYLKLPDHN 470

Query: 453  -------------------PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                                 +     EK   ++   +     R N  S     +  L  
Sbjct: 471  EFDGSLTENISPEAVTEAGTRSADDEAEKLARQSLADVLAEENRTNPGSGAHNAITLLTS 530

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                           Q R +E          D +L  +                      
Sbjct: 531  RLGGASSMEVRRLRQQLRAAELRAGGHRCSDDLLLGALLNPQALPAQGIGAAVRRVARVL 590

Query: 554  TKLTVTCLQNVCLDEHRKLPNL------------------WFEEEGKTLSSLFSKIIETG 595
                    +     E                           E   + L ++        
Sbjct: 591  AAGHKALSERGANAETVLWALWQASGLEKNWVTESAQTGPEAERAHRNLDAMIGLFEAAT 650

Query: 596  SCIKANAIEWIDII-----TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
              +        ++       + +  +T+  + ++   + IL    +   ++ T+ + GL 
Sbjct: 651  RFVDQMPGSSAELFLDYIDAQDLPMDTLAARGKRYDAVEILTPALAAGRHWQTVYVCGLQ 710

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-----IYTRS--- 702
            +G WP  T +   L     +D+              D   A     L       +R+   
Sbjct: 711  DGTWPNTTVRGSLLKAGELTDICDMGVAAAQQVRMSDRVRAVRHDELRMFSTAISRANER 770

Query: 703  ---LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY------------ 747
                  ++     S +   L+    T    +++ R         +L              
Sbjct: 771  LVVTAVSSTEDAPSEFFDILVPDARTAGITHVR-RPMTLRALVAELRRYAQAQDTDPTLA 829

Query: 748  ----------TTKQPHYKRPKPFP--------------------------PLEAQPRTYS 771
                               P+ +                             E      S
Sbjct: 830  NAAAAQLNRLAQAGVPGAAPEQWWGLLPLSTEQNAFTPHPHRDGLSTDSGDPEKLTVPVS 889

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S I+ +   P   +      +       +       GTL H I  E             
Sbjct: 890  PSRIETIHKSPLDWF------VSAARAEAQTDTSRSLGTLIHAIAEEY--------PDAD 935

Query: 832  NHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK 888
               ++  ++       LP   +    R    K+      +  +I      E + V    +
Sbjct: 936  YMTLRGQLEERLSTLALPDTWEGQQIRERAEKMVDKLAVYINEIMPGDHRELVGVEGSFR 995

Query: 889  MAIESIGI--HLTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALK 945
            + +    +   ++G  DR++  + G   I D KTG   P K    +    QL+    A++
Sbjct: 996  VLVPGDAVNAQISGRVDRLEKTEDGRYVIVDLKTGKTKPNKNQIAEHA--QLAAYQVAVE 1053

Query: 946  AGSFS-----------------------------QIDCRKVANLFYIRLKQKFKIDCITN 976
            AG+                               ++  RK      ++L           
Sbjct: 1054 AGAGDAMSRDFGVEPDGLDIPAGLEHREAAPQRFEVFTRKSGGAALVQLGDGTAASSRNR 1113

Query: 977  DKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
             +++ + D  +      L++    L  G 
Sbjct: 1114 PQEQDALDPETGIWAVQLVQRAAELIAGA 1142


>gi|187736052|ref|YP_001878164.1| ATP-dependent nuclease subunit B-like protein [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187426104|gb|ACD05383.1| ATP-dependent nuclease subunit B-like protein [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 957

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 127/961 (13%), Positives = 268/961 (27%), Gaps = 187/961 (19%)

Query: 9   FTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT 68
           F ++   P  R +   LL+                     + VPT+ + ++LR     I+
Sbjct: 4   FFLSWDKPACRAVAERLLSLG------------NGFHRHLVLVPTRESGRQLREYLASIS 51

Query: 69  GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK 128
             ++   P +         +   +   +              ELA  +L        +  
Sbjct: 52  RTQAIFAPQVIPADQFPRMEEKEETASAPE------------ELAGWLLALGKTPHRLYP 99

Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188
            L+P +   +P   ++ + +A +L ++   +  +                       D  
Sbjct: 100 RLFPRT---MPEDFSSMLEMAGSLQNLRHAMANQGVS---------CIMAHHACAGRD-- 145

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK---------GPIIIAGSTGSI 239
               + W +        +       L    A       +         G II+A +    
Sbjct: 146 ----ERWKDMERLEGQCTQQLESWKLEDRTAMKAEAPPRLLNSLRETGGNIILACTAEVP 201

Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
           P     +                   +P  IW    E+      S               
Sbjct: 202 PPLRHALQHAER------------NGVPVQIWIHAPEEEAASFDS--------------- 234

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
                         G    E + R  +                         I+     +
Sbjct: 235 -------------WGCPLPEEWSRRPI------------------------PIRDGQIRI 257

Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
           A   A    E    IA     + +      AL   D ++   +   L ++G  +    G 
Sbjct: 258 AANPARLAEETCRIIA----RTAEGGTPDIALGVCDPDMNVALDAALRQYGWGLHNPEGK 313

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
           P + +    +L +L  A+ +      + +L +  L             K      A    
Sbjct: 314 PFAGSGVMDLLRNLRRALEEKGTARPVYSLARSSLLCAS------LGIKGQQGCCAALDK 367

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                + + +  +L R+                         +L + +++    L T   
Sbjct: 368 IQQKFLPETEEYLLSRLKEAYPGAFPSIQAILEWRNRMAEPGMLGERLMEWFPALATIYG 427

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
            +         ++  ++  +CL  +                           ++  S   
Sbjct: 428 PE---------TEAMEMFHSCLSGL-------------------------MRLQQRSTAF 453

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           ++    + ++ + +    V+ + +  + L  LG +E        LIL GLNEG  P+   
Sbjct: 454 SSPETALLLLMKCLQPLRVRNRRKAHAALDSLGWMEVHFRPERNLILTGLNEGTVPEGGV 513

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-----IYTRSLRENNIPTIASR 714
            + F+   ++  L + +  +   + +        +R       I        N P   S 
Sbjct: 514 SDQFMPEELRETLGIDSFNRKKARDSFLLTALLHSREREGSLTILLSRTSSRNDPLTPSS 573

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLD-----------WTRKLDYTTKQPHYKRPKPFPPL 763
            L R          + L +                     +   T        P    P 
Sbjct: 574 LLMRCPEAELPHRVERLFQEISDVPAPLPYQRGNWHLQPAEGWKTAADIGAMAPGYKNPW 633

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT--DRGTLFHNIITELIK 821
           + +   +S S +K+ +  P   + R  L ++         D    + GT+ H+++    +
Sbjct: 634 KEKGLAFSPSVLKRFLACPMRFWMREALHMNEEEFLPDKEDMAVNELGTMLHDVLECFCR 693

Query: 822 KRI----NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF---HKISHSFLEHEEKI 874
           +        N     + + +I++  F K+  P  +  +         ++S   ++H + +
Sbjct: 694 EHAVLKDGMNAASFQNAITEILEQTFRKQYGPSPLMPLLLQKRSMEQRLSVYAVQHLQAL 753

Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
           Q     I      +      G  +    DRID    G + + DYKTG     E  +K +D
Sbjct: 754 QEGWSCIAFEHQVE-NWILGGFPMKFRIDRIDRHADGHIRVIDYKTGAASSCE--KKHLD 810

Query: 935 P 935
           P
Sbjct: 811 P 811


>gi|87161934|ref|YP_493569.1| exonuclease RexB [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194661|ref|YP_499457.1| exonuclease RexB [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|161509166|ref|YP_001574825.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus USA300_TCH1516]
 gi|221142112|ref|ZP_03566605.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus str. JKD6009]
 gi|258452082|ref|ZP_05700098.1| exonuclease RexB [Staphylococcus aureus A5948]
 gi|262049317|ref|ZP_06022191.1| hypothetical protein SAD30_1615 [Staphylococcus aureus D30]
 gi|262052140|ref|ZP_06024348.1| hypothetical protein SA930_1463 [Staphylococcus aureus 930918-3]
 gi|282922246|ref|ZP_06329941.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9765]
 gi|284023893|ref|ZP_06378291.1| exonuclease RexB [Staphylococcus aureus subsp. aureus 132]
 gi|294847954|ref|ZP_06788701.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9754]
 gi|304381480|ref|ZP_07364130.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            ATCC BAA-39]
 gi|122539895|sp|Q2FZT6|ADDB_STAA8 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|123486590|sp|Q2FIA9|ADDB_STAA3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|251764614|sp|A8Z072|ADDB_STAAT RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|87127908|gb|ABD22422.1| exonuclease RexB [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202219|gb|ABD30029.1| exonuclease RexB, putative [Staphylococcus aureus subsp. aureus NCTC
            8325]
 gi|160367975|gb|ABX28946.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus USA300_TCH1516]
 gi|257860297|gb|EEV83129.1| exonuclease RexB [Staphylococcus aureus A5948]
 gi|259159959|gb|EEW44995.1| hypothetical protein SA930_1463 [Staphylococcus aureus 930918-3]
 gi|259162549|gb|EEW47117.1| hypothetical protein SAD30_1615 [Staphylococcus aureus D30]
 gi|269940468|emb|CBI48845.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            TW20]
 gi|282593536|gb|EFB98530.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9765]
 gi|294824754|gb|EFG41176.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9754]
 gi|302750794|gb|ADL64971.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            str. JKD6008]
 gi|304339843|gb|EFM05787.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            ATCC BAA-39]
 gi|315197319|gb|EFU27657.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus CGS01]
 gi|320141217|gb|EFW33064.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            MRSA131]
 gi|320143274|gb|EFW35064.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            MRSA177]
 gi|329313634|gb|AEB88047.1| ATP-dependent helicase/deoxyribonuclease subunit B [Staphylococcus
            aureus subsp. aureus T0131]
 gi|329726228|gb|EGG62698.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            21189]
          Length = 1158

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 114/966 (11%), Positives = 271/966 (28%), Gaps = 141/966 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L   + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            N  N    R    ++ +   +          +    N   C   + ++E+   REE   I
Sbjct: 257  NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315

Query: 375  AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            A  + + + +     +  A++  D + A      L  + I  +I     ++      ++ 
Sbjct: 316  ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            SL+  I        +  L+K  +    +     +   + LE   L         +D +  
Sbjct: 376  SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433

Query: 492  VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547
             ++  +      H      R + E   +L   ++D IL     ++   T K    +   +
Sbjct: 434  NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYES 493

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +   +     +T    + L+          ++    L  +   ++        +   +++
Sbjct: 494  MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +    ++        +    + I     +++ N   + L G+N+G  P+    +  ++  
Sbjct: 553  VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612

Query: 668  MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717
             +         +L+  +    + +A   +      +  + ++ SL   +      S +L 
Sbjct: 613  EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLN 672

Query: 718  RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758
            ++  L       N+ +                     +    W              +  
Sbjct: 673  QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVI 732

Query: 759  PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789
                                                +    S S  +     P+  YA  
Sbjct: 733  RDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848
             LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+    
Sbjct: 793  GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850

Query: 849  -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888
                                 I  + L   +     S           +           
Sbjct: 851  VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910

Query: 889  ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939
                  + I I++ G  DRID   K+    V+I DYK+  G            +  Q+  
Sbjct: 911  QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970

Query: 940  EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994
                +    +    + I   K   L Y  + + + K    ++  +     +L +K    L
Sbjct: 971  YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFK--L 1026

Query: 995  IEIVTL 1000
              +V  
Sbjct: 1027 SGLVNA 1032


>gi|283770032|ref|ZP_06342924.1| ATP-dependent helicase/deoxyribonuclease subunit B [Staphylococcus
            aureus subsp. aureus H19]
 gi|283460179|gb|EFC07269.1| ATP-dependent helicase/deoxyribonuclease subunit B [Staphylococcus
            aureus subsp. aureus H19]
          Length = 1158

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 114/966 (11%), Positives = 272/966 (28%), Gaps = 141/966 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L + + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            N  N    R    ++ +   +          +    N   C   + ++E+   REE   I
Sbjct: 257  NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315

Query: 375  AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            A  + + + +     +  A++  D + A      L  + I  +I     ++      ++ 
Sbjct: 316  ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            SL+  I        +  L+K  +    +     +   + LE   L         +D +  
Sbjct: 376  SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433

Query: 492  VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547
             ++  +      H      R + E   +L   ++D IL     ++   T K    +   +
Sbjct: 434  NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +   +     +T    + L+          ++    L  +   ++        +   +++
Sbjct: 494  MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +    ++        +    + I     +++ N   + L G+N+G  P+    +  ++  
Sbjct: 553  VFDIGLEQLEFVMIPQTLDQVSIGMMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612

Query: 668  MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717
             +         +L+  +    + +A   +      + ++ ++ SL   +      S +L 
Sbjct: 613  EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLN 672

Query: 718  RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758
            ++  L       N+ +                     +    W              +  
Sbjct: 673  QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732

Query: 759  PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789
                                                +    S S  +     P+  YA  
Sbjct: 733  RDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848
             LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+    
Sbjct: 793  GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850

Query: 849  -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888
                                 I  + L   +     S           +           
Sbjct: 851  VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910

Query: 889  ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939
                  + I I++ G  DRID   K+    V+I DYK+  G            +  Q+  
Sbjct: 911  QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970

Query: 940  EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994
                +    +    + I   K   L Y  + + + K     +  +     +L +K    L
Sbjct: 971  YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026

Query: 995  IEIVTL 1000
              +V  
Sbjct: 1027 SGLVNA 1032


>gi|21282577|ref|NP_645665.1| hypothetical protein MW0848 [Staphylococcus aureus subsp. aureus MW2]
 gi|297208399|ref|ZP_06924829.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            ATCC 51811]
 gi|300912475|ref|ZP_07129918.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            TCH70]
 gi|81762666|sp|Q8NXF0|ADDB_STAAW RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|21204015|dbj|BAB94713.1| MW0848 [Staphylococcus aureus subsp. aureus MW2]
 gi|296887138|gb|EFH26041.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            ATCC 51811]
 gi|300886721|gb|EFK81923.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            TCH70]
          Length = 1158

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 114/967 (11%), Positives = 270/967 (27%), Gaps = 143/967 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L   + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAIS 373
            N  N    R           +  D+++ +   + +   +      + ++E+   REE   
Sbjct: 257  NELNISIERQYFNQLY--RFNNQDLKHLEQEFDVLQINRVACQGHINILESATMREEINE 314

Query: 374  IAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            IA  + + + +     +  A++  D + A      L  + I  +I     ++      ++
Sbjct: 315  IARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMI 374

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             SL+  I        +  L+K  +    +     +   + LE   L         +D + 
Sbjct: 375  RSLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDEL 432

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCG 546
              ++  +      H      R + E   +L   ++D IL     ++   T K    +   
Sbjct: 433  FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYE 492

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
            ++   +     +T    + L+          ++    L  +   ++        +   ++
Sbjct: 493  SMEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFL 551

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            ++    ++        +    + I     +++ N   + L G+N+G  P+    +  ++ 
Sbjct: 552  EVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVFLVGMNDGTMPQPVTASSLITD 611

Query: 667  VMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSL-RENNIPTIASRWL 716
              +             T++      A      M    + + ++ SL   +      S +L
Sbjct: 612  EEKKYFEQQANVELSPTSDILQMDEAFVCYIAMTRARQDVTFSYSLMGSSGDDKEISPFL 671

Query: 717  QRLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRP 757
             ++  L       N+ +                     +    W              + 
Sbjct: 672  NQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQV 731

Query: 758  KPFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYAR 788
                                                 +    S S  +     P+  YA 
Sbjct: 732  IRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYAS 791

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
              LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+   
Sbjct: 792  HGLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILP 849

Query: 849  --------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK---------- 888
                                  I  + L   +     S           +          
Sbjct: 850  KVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELI 909

Query: 889  ----MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLS 938
                   + I I++ G  DRID   K+    V+I DYK+  G            +  Q+ 
Sbjct: 910  AQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMM 969

Query: 939  LEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKN 993
                 +    +    + I   K   L Y  + + + K    ++  +     +L +K    
Sbjct: 970  TYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFK-- 1025

Query: 994  LIEIVTL 1000
            L  +V  
Sbjct: 1026 LSGLVNA 1032


>gi|268680530|ref|YP_003304961.1| hypothetical protein Sdel_1911 [Sulfurospirillum deleyianum DSM 6946]
 gi|268618561|gb|ACZ12926.1| conserved hypothetical protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 780

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 82/522 (15%), Positives = 161/522 (30%), Gaps = 62/522 (11%)

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                L   +          ++    K      + +   +      L  +     + SL S
Sbjct: 300  FFQTLSALEKAMRQGEIEDTLR--VKRLKIDEEKLVTCKTVWHQKLAPQSAMDFIRSLLS 357

Query: 590  KIIETGSCIKANAIEWIDIITR-------------LIDGETVKPKIEKSSTLFILGTLES 636
            +        K     +   +               L     +     +   + ++G LE+
Sbjct: 358  EKEAQKGVFKEALFAFEHFLNHAPSLRFEQVIKLLLNRLSVLSEDDVRGGKITVMGVLET 417

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTR 695
            R + +  +I+   N+   PK ++K+ FLS  +++   L T         + +        
Sbjct: 418  RGVAYKGVIVVDFNDEFVPKRSSKDLFLSSDVRAHAGLPTKRDRENLQRYFYHQLFSRAT 477

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
             +       E     + SR+L  +         +         ++  R L        Y 
Sbjct: 478  KVAIAYVKNET---AMPSRFLDEMGFDTQRMADEGNFAPLLWKINAPRTL--------YT 526

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
            +     P + +    S +++K L++     Y R I K           D    G + H +
Sbjct: 527  QAFIDAPYDLKAAPLSATKLKTLLSCQRQFYFRYIAKFKEAKMPSNTIDEQSLGIVLHKV 586

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEKE---NLPPHIDIIWRHLFHKISHSFLEHEE 872
            + E     + +N  E  HL  +I +   +KE   ++  +   +W          F+ +E 
Sbjct: 587  LEE---AILTQNLLEEKHLFAKI-EELLKKESHNDVWGYFADVWLEKLRP----FICNEV 638

Query: 873  KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQ 930
            K       ++       ++   G  L G  DRID  +   + + DYK+G  P    +  +
Sbjct: 639  KRFEDGFLVYK-KEFSHSVLYQGFVLEGQIDRIDRKED-RLYVIDYKSGKVPTTTEKNLE 696

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
              +D QL   +    A         +V   +Y  LK+   I+           +   E+ 
Sbjct: 697  NTVDFQLLFYSLIAGALG-------EVHGAYYYDLKEGVLIE-----------EPFLEEK 738

Query: 991  LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
               L E + L       +   L    K      Y  L    E
Sbjct: 739  KVLLEEKLRLFAKPMNGYA--LCDDIKHCRICPYVMLCGREE 778



 Score = 53.8 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 56/208 (26%), Gaps = 28/208 (13%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
             PT RAI+     F+E      T+LP   S+ +  ++          +           
Sbjct: 4   VFPTSRAIRSFYDTFVETN----TLLPKAISIAEFEQKALLIPHRSLVD-------EDMR 52

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
           + L +    +                L +       +  +  L    + +  E+   + L
Sbjct: 53  VLLMQEASRFTRFEL-----------LHIDRDFFTFLKNSSYLFRFFEELAHEKVSMDAL 101

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
                      +    D L+   K++   L +      +         EA ++       
Sbjct: 102 ---VIADTYAHYAEHLDVLQTLLKHYKALLNQQALYDRITLLELYTINEA-YVRSLGAVC 157

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAI 257
           I + G          L+  +A      +
Sbjct: 158 IHLEGF--LSHFEWELLEKIAAIIPLHV 183


>gi|332799907|ref|YP_004461406.1| hypothetical protein TepRe1_1971 [Tepidanaerobacter sp. Re1]
 gi|332697642|gb|AEE92099.1| hypothetical protein TepRe1_1971 [Tepidanaerobacter sp. Re1]
          Length = 822

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 80/533 (15%), Positives = 170/533 (31%), Gaps = 56/533 (10%)

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE-------EEGKTLSSLFSK 590
            +     +  +  IS+W       L+     E     +           +  ++L  + ++
Sbjct: 287  EEWAKDSSASKPISEWIADLENFLEVQGYPEKFCHIHDNNLAVVKRDIDAFQSLQGVLTE 346

Query: 591  IIETGSCIKANAIEWIDIITRL--IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            + ET   I   A+ + D  T L       V       + ++++     R L FD + + G
Sbjct: 347  LNETDKMISKEAVSFTDFATVLDTHLQSCVYSYSSLKNGIWVIPPAMLRGLRFDKIYVPG 406

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNL-----KTAEKYIGQAAHDFEMANGTRHL-IYTRS 702
            + EG +P++   +  L    +++ N       T +  + +    F+    +     ++  
Sbjct: 407  MVEGEFPRDFRPDWLLKDKDRAEFNRKGYKFDTLDLLLERERESFDFLISSSQAGYFSYP 466

Query: 703  L-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
            +  E+N   + S +L+ L         +   +   C       +            K   
Sbjct: 467  MILEDNTSLLMSIYLEELCQKSAATIENVRFESVYCGKKLENIIAQERGVI-TGNTKQRL 525

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                    +S + +      PY  +  R+L L  +   + +     RGT+ H I+    K
Sbjct: 526  KEHFCNTPFSTTALNMYGECPYKFFLARVLNLSPVEE-EDEYTAIARGTVIHKILEIFFK 584

Query: 822  KRINKNTPEINHL----MKQIIDSHFEKENLPPHIDIIWRHLFHKI-----SHSFLEHEE 872
            +   K    +       +K + D   +  NL             K        ++L    
Sbjct: 585  RHREKLDAAMLDEYTNDIKALADEVIKNYNLQDSFAHPLLLEIEKCGIITNIVNYLAWHI 644

Query: 873  KIQSSIEKIFVNI------PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
            K        F+ +         +      I L G  DRID    G + I DYK G  P  
Sbjct: 645  KQMGDFVPAFIELGFGYKNDFSLHFAP-DIQLVGKIDRIDEDSKGRLVIFDYKVGSTPDI 703

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK------ 980
               +   + QL +   A +      +  + VA   +I +K+    + +  D +       
Sbjct: 704  NKIEDGTNLQLPIYIMAAEQ-----LLKKTVAGGVFISIKKGAVDNILVKDDEDLPFISR 758

Query: 981  ---------YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
                        + + E     +   V  ++  +  F+ + +   K ++   +
Sbjct: 759  RRKKGILSQQEWNHMMEAVRATIRTYVDDIREAK--FLLNPKRCPKVDVYGSF 809


>gi|91788135|ref|YP_549087.1| exonuclease-like protein [Polaromonas sp. JS666]
 gi|91697360|gb|ABE44189.1| RecB family exonuclease-like protein [Polaromonas sp. JS666]
          Length = 856

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 120/798 (15%), Positives = 226/798 (28%), Gaps = 73/798 (9%)

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            RL+    +    A  +      + +       +   +        +              
Sbjct: 126  RLVEAAWSLGRVAAAVLPAQRQVWSERLAVSLQAGLDSPVLALEAAVGQIALAWAAASAY 185

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
               R        ++     ++  ++ +          +  +   +           +L  
Sbjct: 186  PSDRLFQATPALLAVLEGFQAEPLTDALKAHFGERSISIALCLPQDLRAPAELPLPSLHA 245

Query: 364  ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
            A +  +EA   A  +   L + +   ALI  DR L RRV   L   GI +    G  LST
Sbjct: 246  AMDAEDEAGRAAACVLAHLAQGRSPVALIAQDRLLTRRVGAMLAGRGIAMRDETGWKLST 305

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
            T  ++ L  LL A+       A+   +K+     G     ++ A+  L    LR  ++  
Sbjct: 306  TRAAASLMGLLRAMPWDASTDAVLDWLKN---APGVSPGEVTAAETELRKAGLRAWRDLP 362

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
                       ++A Q +                                         +
Sbjct: 363  ATPQPAFAATQQLALQVDALR-------------------------------------KA 385

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                  ++ W +     LQ+    +  ++ N   +   + L        E  S       
Sbjct: 386  LGRTRPLASWLRDLRAALQSAGQWDALEIDNA-GQTVLEVLRLHEGAEAEFDSAPTMALA 444

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
             +   + + ++G    P+  +   + IL   +        ++L G +E   P +      
Sbjct: 445  SFTSWVNQALEGGKFSPEHPQGEQVVILPLAQLLGRPMQAVVLPGCDEIRLPVSPEPAGL 504

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
             +   +  L L + +         +       H+       E     I S ++Q LL+  
Sbjct: 505  WTPGQREVLGLPSRDMLASANRAAWHYVLQLPHVDLLWRTSEAGEHLIPSGFVQELLLAQ 564

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                           L                RP P           S S  + L   PY
Sbjct: 565  AGHGDSPALATDSRRL-------RPVAIQPTPRPMPTGE-ALPVTRLSASAYEDLRRCPY 616

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI---ID 840
              +A R L+L        + D+ D G   H+++    +      TPE++     I    +
Sbjct: 617  RFFALRQLRLQESGELDSELDKRDFGNWLHSVLRYFHEALKAAPTPELSAREAMINLAAE 676

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
               +   L     + +  ++ ++   +L      ++   +      A+  +    + L G
Sbjct: 677  RVTQAMALSDSEFLPFAAIWPRVREGYLAWLTDHEAEGARFEE-AEAEREMPLGKLQLIG 735

Query: 901  FADRIDLLKSGFVDITDYKTG-DNPKKETAQKL-IDPQLSLEAAALKAGSFSQIDCRKVA 958
              DRID    G   + DYKT       E  +    D QL+  AA +              
Sbjct: 736  KLDRIDRQADGHTLLIDYKTEPRTVTVERIKDGQEDTQLAFYAALMHD---------DTL 786

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE-K 1017
               Y+ L +K               D L E  L ++  I                L E K
Sbjct: 787  AAAYVNLGEKEATRTYAQPGIVGLRDALIESILTDMDRIAR--------GTPLPALGEGK 838

Query: 1018 SNIQSEYDHLARVAEWRE 1035
            +        L R   W E
Sbjct: 839  ACEYCAARGLCRKDFWNE 856


>gi|57651658|ref|YP_185839.1| exonuclease RexB [Staphylococcus aureus subsp. aureus COL]
 gi|151221049|ref|YP_001331871.1| exonuclease RexB [Staphylococcus aureus subsp. aureus str. Newman]
 gi|81694860|sp|Q5HHB8|ADDB_STAAC RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|251764613|sp|A6QFH7|ADDB_STAAE RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|57285844|gb|AAW37938.1| exonuclease RexB [Staphylococcus aureus subsp. aureus COL]
 gi|150373849|dbj|BAF67109.1| exonuclease RexB [Staphylococcus aureus subsp. aureus str. Newman]
          Length = 1158

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 114/966 (11%), Positives = 271/966 (28%), Gaps = 141/966 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L   + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            N  N    R    ++ +   +          +    N   C   + ++E+   REE   I
Sbjct: 257  NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315

Query: 375  AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            A  + + + +     +  A++  D + A      L  + I  +I     ++      ++ 
Sbjct: 316  ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            SL+  I        +  L+K  +    +     +   + LE   L         +D +  
Sbjct: 376  SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433

Query: 492  VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547
             ++  +      H      R + E   +L   ++D IL     ++   T K    +   +
Sbjct: 434  NVEHFSKMGRKGHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYES 493

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +   +     +T    + L+          ++    L  +   ++        +   +++
Sbjct: 494  MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +    ++        +    + I     +++ N   + L G+N+G  P+    +  ++  
Sbjct: 553  VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612

Query: 668  MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717
             +         +L+  +    + +A   +      +  + ++ SL   +      S +L 
Sbjct: 613  EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLN 672

Query: 718  RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758
            ++  L       N+ +                     +    W              +  
Sbjct: 673  QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVI 732

Query: 759  PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789
                                                +    S S  +     P+  YA  
Sbjct: 733  RDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848
             LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+    
Sbjct: 793  GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850

Query: 849  -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888
                                 I  + L   +     S           +           
Sbjct: 851  VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910

Query: 889  ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939
                  + I I++ G  DRID   K+    V+I DYK+  G            +  Q+  
Sbjct: 911  QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970

Query: 940  EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994
                +    +    + I   K   L Y  + + + K    ++  +     +L +K    L
Sbjct: 971  YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFK--L 1026

Query: 995  IEIVTL 1000
              +V  
Sbjct: 1027 SGLVNA 1032


>gi|91776105|ref|YP_545861.1| DNA helicase/exodeoxyribonuclease V, subunit B [Methylobacillus
            flagellatus KT]
 gi|91710092|gb|ABE50020.1| DNA helicase/exodeoxyribonuclease V, subunit B [Methylobacillus
            flagellatus KT]
          Length = 940

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 124/873 (14%), Positives = 237/873 (27%), Gaps = 96/873 (10%)

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
            WL A     + +     + V     S    ++       E L     G +        + 
Sbjct: 63   WLDALFEAALLTGELDAQEVPQGVLSSAQERMLWETVIKEVLAAEVAGDLFDIKGLACMA 122

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
              A  +            LP  D          +  +   +     +            L
Sbjct: 123  QEANQLLLEWR-------LPAPDAGYSEETRQFLAWRREFVARCRQSGWMEAARYFDWQL 175

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
            D L      V RL           M      L            ++     + +      
Sbjct: 176  DML---ARGVGRLPGSIAFAGFDRMTPQMVRLWEILQQRHVD--VQRHDTALAEAGGAQR 230

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL------TRFGIN-- 412
            L+ AD + E   ++A A R   +       ++  +    R     L        +     
Sbjct: 231  LLLADQQAECRAAVAWAKRQLAEHPGASIGIVVPELAKLRGTLARLLDDALHPSWVRPAM 290

Query: 413  ------IDISAGIPLSTTLHSSILTSLLNAI-----FKLNDFMAIATLVKHPLAKFGFPE 461
                   D S G PL          +LL            +    + L++ P       E
Sbjct: 291  VEAPRQYDFSLGQPLHREPVVHTALALLQFFSQWRRQDKIEQQDFSHLLQQPYWSHAVTE 350

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                   +A         +     M +  LV        +                    
Sbjct: 351  ADARAQLDARM------RERLPLSMSMSRLVRFIRREAGSEKAPLV------------LA 392

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             L  HI   +  L           G    S W  +    L  +     ++  + +  +  
Sbjct: 393  GLQAHISDALAIL-------QEQHGQQLPSVWADVMQRTLDALEWPGRQRSLSSFEFQAI 445

Query: 582  KTLSSLFSKIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
            K    +   +             + +  +  L+  +  +P+ E    L ++G LES    
Sbjct: 446  KAFDEVLQALASLDVLQQALPFSQALARLRELVQEKIHQPEAEGEVRLQVMGMLESVSQP 505

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---KYIGQAAHDFEMANGTRHL 697
               L + G+N+ VWP     NP L   MQ    +  A+   +          + +  + +
Sbjct: 506  LHGLWVMGMNDYVWPPPPRPNPLLPAAMQRQYGVPNADSAVQAAFAQVVHQRLLHSAQQV 565

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
            I++ +L++       S  LQ +          +        L                  
Sbjct: 566  IFSSALKDGERELRPSPLLQAIP-------LADAMPELSLSLAQALAERDGKPLQWLDDH 618

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
            +  P  E +  +     +K     P   Y +  L    +       D   RGTL H ++ 
Sbjct: 619  QAPPVEEGEHISGGTGLLKAQAVCPAWAYFQYRLHARALKAPVNGLDAAGRGTLVHLVLE 678

Query: 818  ELIKKRINKNTPEINH-LMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHS 866
               + R   +   ++   ++Q +    +           E L      +      ++   
Sbjct: 679  RFWRGRGLHDLQAMDEMQLEQALGEAVQDGLSIYADTCGEVLSEAFVALETLRLTRLLKG 738

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
            +L  E   +     +      K+ IE + I L    DRID L+ G   + DYKTG  P  
Sbjct: 739  WLAFERMREQPFTVLASEQQQKVLIEGVEITL--IIDRIDQLEDGSRIVIDYKTGRKPDT 796

Query: 927  --ETAQKLIDPQLSLEAAAL--------------KAGSFSQIDCRKVANLFYIRLKQKFK 970
                  ++ +PQL + AA +                 S       K+    +  L     
Sbjct: 797  RNWAQSRITEPQLPVYAAFVLSSLDPADTAGSQGAEISAIAFAMVKLEEHGFAGLANGNV 856

Query: 971  IDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
            +  +     K + +  SE+   +   ++   ++
Sbjct: 857  LPAMPVLDDKKTREVFSEEMFPDWHSVLAHWRS 889


>gi|168185693|ref|ZP_02620328.1| ATP-dependent nuclease subunit B [Clostridium botulinum C str.
            Eklund]
 gi|169296371|gb|EDS78504.1| ATP-dependent nuclease subunit B [Clostridium botulinum C str.
            Eklund]
          Length = 1135

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 117/1012 (11%), Positives = 270/1012 (26%), Gaps = 160/1012 (15%)

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
             + S   +  + F      ++ L   +++  +L+ +  ++   +++L             
Sbjct: 63   KVTSFERIAYDVFNEVGGATHKL---INSSGKLMLIFNIVNKLKDEL------------- 106

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-ALKNEKYGMWWLLAADFLKIASKYW 195
             +  + AN      N++DII  ++  +    +L  +L   +   +     + +    + +
Sbjct: 107  KIFATAANQEGFVNNISDIITELKRYDVTPSELRVSLNLIEEDEFLKDKINDISYIFEQF 166

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             E L   N          L +   +         + +   +   P   ++   +      
Sbjct: 167  QESL-HKNYIDSEDELTLLYKKM-DTSKMFDDAEVWVDEFSSFTPQQYKIFEKLTKKAKQ 224

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
              +   +D +      +                       L K+L+   I  +    L  
Sbjct: 225  VSLTLCMDYYKAIDGTDVFAPTKKTEQK------------LIKILEENGITIDKPIIL-- 270

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                    +      F           +  +       +   D+ +I A N   E  +IA
Sbjct: 271  --------NNNHINRFKDSSELKYLEENYFKYPYKPYSESTEDIKIIRALNPYSEVENIA 322

Query: 376  IALRM---SLDENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILT 431
              +           +  A+IT D     ++       + I   I     +       ++T
Sbjct: 323  KEIAKISMKNSIRYRDIAVITRDLEGYEKIVKTIFDEYEIPYFIDKKKEIDDNPLIVLIT 382

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            S++    K   + A+   +K  L+     E  L         +  R           +++
Sbjct: 383  SVIEIFNKSWSYEAMFRYLKTGLSNISKEEVDLLENYVLAYGIRGRKKWQYAWEYGNENI 442

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            +      +   +      +   +   + A  +   +   +           S   N +I 
Sbjct: 443  LEQVNEIRIKVSEPLIKFASKLKGKSK-ADEICSAVYNFLC----------SIGVNETIE 491

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
             W              E  +     + +    +  L  +++E     +    +++ I++ 
Sbjct: 492  KWVHKFKN--------EGNQALAKEYSQIWNMVIELLDQVVEVFKEEELQLKDFVKILSL 543

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
                  +         + +      R  +   L + G+N+G++P  +     LS   +  
Sbjct: 544  GFKDYKMGLIPPSLDQVLVSDVERVRTHDIKLLYIIGVNDGIFPAVSKDEGILSDSDRGS 603

Query: 672  L---NLKTAEKY----IGQAAHDFEMANG-------------------TRHLIYTRSLRE 705
            L    ++ AE        +    +                           +I TR    
Sbjct: 604  LKKMGIEIAEDTKSKAFEEQYLIYRTLTTTQKYLRICYSIADYEGKALRPSIIVTRFKSL 663

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                   S  +         +            +   R+ D   K   +         E 
Sbjct: 664  FPKIAEESDNITMDSEEENIELISREIPTFNNLVSVLRREDNKVKVSPFWSDVYKWYSEN 723

Query: 766  QPRT---------------------------------YSFSEIKQLINDPYAVYARRILK 792
                                                  + S +++    P+  Y +  LK
Sbjct: 724  PKWKETVDTVFSAISYTNAVDDISEEKIRKMYGNKLYLTVSRLEKYAQCPFGYYIKYGLK 783

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSH 842
                  F       D GT  HN+I E             +  +K   +    +       
Sbjct: 784  AKERKIF--ALTPPDLGTFMHNVIDEFSETVDKSGIKWYEIEDKWCKDTVSEIVDRKAEE 841

Query: 843  FEKENLPPHIDIIWR-HLFHKISHSFLEH--EEKIQSSIEKIFVNIPAK-------MAIE 892
                         +      ++    +    E   +S  + I   +          + I+
Sbjct: 842  SAGGIFTSSARYKYFTERLKRVLIKTILVIIEHLKRSGFQPIGHEVGFGNDEKYPPIEIQ 901

Query: 893  ---SIGIHLTGFADRIDLL----KSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEA-AA 943
                  + L G  DR+D L    K  +  I DYK+G  +         +  QL     A 
Sbjct: 902  LSSGEKVKLIGRIDRVDKLDMEKKD-YYRIIDYKSGNKDFSLSDVYYGLQLQLLTYLDAI 960

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            L        +      + Y+++      D I   K+  S +E+ ++ +K L 
Sbjct: 961  LTNEELKDREEALPGGVLYLKID-----DPIIKGKRNLSEEEIQDEIMKALK 1007


>gi|293189191|ref|ZP_06607915.1| putative ATP-dependent DNA helicase [Actinomyces odontolyticus F0309]
 gi|292821863|gb|EFF80798.1| putative ATP-dependent DNA helicase [Actinomyces odontolyticus F0309]
          Length = 1078

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 117/1094 (10%), Positives = 284/1094 (25%), Gaps = 145/1094 (13%)

Query: 19   REMIPALLNGTLVENFRYD-PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS-TILP 76
            R ++ A  +G ++         +   LA     V  + A Q   +  +     ++  + P
Sbjct: 43   RAVVDAACSGDVIARGAPSSGRSTCALA-----VFEEAAAQGRSALILAPDRTRADVLTP 97

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL-LELARLILIWRNK--LPDIIKDLYPE 133
              ++LG             +Y +       + + LE   L+        L + ++ +   
Sbjct: 98   RAQALGPDAVRPVRTPASFAYQVVATWRTQRDVPLEGVELVTGAAQDQMLAEALESVDAP 157

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193
             P  +             L +++            L           W  A   +    +
Sbjct: 158  WPEDIGPQMRAMPAFRGELRNLVARAGEAGMDASSLSEAGARFGRPEWQGAGAIVAALEE 217

Query: 194  YWTERLVELN--ASSPVGYQIALMRAEAEHLMKGT----------KGPIIIAGSTGSIPA 241
                               Q       A                    +I+       P+
Sbjct: 218  GPERSPEYPRTLRVDLSRIQALAADLIAAWEQDAPKRGVQAPCPVPDVVIVDDLQDCTPS 277

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T RL+    +   GA ++   D  +  A +                          +L  
Sbjct: 278  TLRLLRACRDA--GARIVAFSDSDVAVAGYRGGEPHLD-----------------RRLAS 318

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VA 360
             L ++  ++ ++ ++S         + +          ++      +           + 
Sbjct: 319  ALGVEIAELGQVYDMS-------RAVRELARQACARIAQSGSPARREAGVADDAPKGALV 371

Query: 361  LIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISA 417
                    +    IA ALR     +        +I    ++       L R G+ +    
Sbjct: 372  THLGATPSQMGALIARALRSHHLHDGIDFSDQVVIVRSSSMVAETSRYLARGGVPVAGGG 431

Query: 418  G-IPLSTTLHSSILTSLLNAIFKLNDFM-AIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                 +T   + +L  L+      +D   A    +   L                L  + 
Sbjct: 432  RAFDFATQPTTRLLLDLVTMPTGTSDTDVAQRRELAERLLPSPLVRADALAIHRLLRRLN 491

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                + + +     + +    A   ++          +E+           + + +    
Sbjct: 492  AARAQAAEEAGGESAPIPLTAADLVSDPQTWRPAIEQAEQAGGKRARAAAMLARPLETAA 551

Query: 536  TYKTNK-----NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                              S+ + + +           +          +    L  +   
Sbjct: 552  RLWELGMSGSVRPQERLWSLWEASGVASEWRSRAIASDDSSGWYDDQLDAVVALLRVADV 611

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
              +      A      +++   +  +T+     +   + +L   ++   ++  ++L GL 
Sbjct: 612  WEQRNPAGSAVG-FASELLAGSVPIDTISRVGVRPGGVEVLTPAQAMGRHWQVVVLAGLQ 670

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNL-----------------KTAEKYIGQAAHDFEMANG 693
            +G WP    ++  L   + +D+                   + A + +    +   +A  
Sbjct: 671  DGAWPNLRLRDRILRADLLADVGAGRVAVGEDGREELIDSTRAARRAVLDDEYRLFVAAV 730

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ------------CYLDW 741
            TR      +    +     S +   +  L GT   +++                      
Sbjct: 731  TRSRSIVHAGAVRSEDAAPSVFFDLVAYLAGTHRENDIVPVDPVEAPLSLSGHIADLRAR 790

Query: 742  TRKLDYTT-----------------------KQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                D                          +                    S S+ ++ 
Sbjct: 791  AANSDEPADAQLAATLLALMAREGIASAQPHRWLGAGGTPTSAQDYRGQIVLSPSQFERA 850

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
            +  P   +   I                  GTL H +  E       + T  +   ++++
Sbjct: 851  LACPLRWFLTTIGADAPSNA------AASLGTLVHAVAEEHPHGTPEELTEALEARIEEL 904

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                        ++D     +  + +   + +            V +   ++ E  G+ +
Sbjct: 905  G----------YNLDTWAGRVADRHAREIVNNLASYVVG-VPGEVTVEQTVSAEVEGVTI 953

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
             G  DR++ +  G V +TD KTG +   + A    +PQL+    A+ A    ++   ++A
Sbjct: 954  RGRMDRLEQVDEG-VRVTDLKTGKSGYTK-ASVAENPQLAAYQMAMLASG-EKVAGARIA 1010

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018
             L               +  + Y    L  + L+   E V  +    +      R S++ 
Sbjct: 1011 LLG-------------GSKPQIYDQPALQGEELERWRESVREVALSARGPYFEARPSQEV 1057

Query: 1019 NIQSEYDHLARVAE 1032
                 +D L    E
Sbjct: 1058 CRYCSFDRLCPARE 1071


>gi|258435313|ref|ZP_05689052.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A9299]
 gi|257848974|gb|EEV72957.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A9299]
          Length = 1157

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 113/967 (11%), Positives = 273/967 (28%), Gaps = 143/967 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L   + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAIS 373
            N  N    R           +  D+++ +   + +   +      + ++E+   REE   
Sbjct: 257  NELNISIERQYFNQLY--RFNNQDLKHLEQEFDVLQINRVACQGHINILESATMREEINE 314

Query: 374  IAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            IA  + + + +     +  A++  D + A      L  + I  +I     ++      ++
Sbjct: 315  IARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMI 374

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             SL+  I        +  L+K  +    +     +   + LE   L         +D + 
Sbjct: 375  RSLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDEL 432

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCG 546
              ++  +      H      R + E   +L   ++D IL     ++   T K    +   
Sbjct: 433  FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYE 492

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
            ++   +     +T    + L+          ++    L  +   ++        +   ++
Sbjct: 493  SMEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFL 551

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            ++    ++        +    + I     +++ N   + L G+N+G  P+    +  ++ 
Sbjct: 552  EVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITD 611

Query: 667  VMQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWL 716
              +         +L+  +    + +A   +      +  + ++ SL   +      S +L
Sbjct: 612  EEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFL 671

Query: 717  QRLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRP 757
             ++  L       N+ +                     +    W              + 
Sbjct: 672  NQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQV 731

Query: 758  KPFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYAR 788
                                                 +    S S  +     P+  YA 
Sbjct: 732  IRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYAS 791

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
              LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+   
Sbjct: 792  HGLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILP 849

Query: 849  --------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK---------- 888
                                  I  + L   +     S           +          
Sbjct: 850  KVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELI 909

Query: 889  ----MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLS 938
                   + I I++ G  DRID   K+    V+I DYK+  G            +  Q+ 
Sbjct: 910  AQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMM 969

Query: 939  LEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKN 993
                 +    +    + I   K   L Y  + + + K    ++  +     +L +K    
Sbjct: 970  TYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWSDIDENKLEQDLIKKFK-- 1025

Query: 994  LIEIVTL 1000
            L  +V  
Sbjct: 1026 LSGLVNA 1032


>gi|22537036|ref|NP_687887.1| exonuclease RexB [Streptococcus agalactiae 2603V/R]
 gi|76787095|ref|YP_329618.1| exonuclease RexB [Streptococcus agalactiae A909]
 gi|77406402|ref|ZP_00783462.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
 gi|81454476|sp|Q8E062|ADDB_STRA5 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|123601918|sp|Q3K1I5|ADDB_STRA1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|22533893|gb|AAM99759.1|AE014231_17 exonuclease RexB [Streptococcus agalactiae 2603V/R]
 gi|76562152|gb|ABA44736.1| exonuclease RexB [Streptococcus agalactiae A909]
 gi|77174993|gb|EAO77802.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
          Length = 1077

 Score =  171 bits (433), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 119/963 (12%), Positives = 260/963 (26%), Gaps = 138/963 (14%)

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            + +  L +             L D+   ++T      +L  L             + L  
Sbjct: 97   FEDGQLKVFGRLKQDASFISQLVDLYKELQTANLSILELKYL-------HSPEKFEDLLA 149

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249
                 ++ L E    +         +  +  L    K  I I+ G T        L+ ++
Sbjct: 150  IFLVVSDLLREGEYDNQSKIAFFTEQVRSGQLDVDLKNTILIVDGFTRFSAEEEALIKSL 209

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
            ++     I+          A +      +     S          +  +      + + +
Sbjct: 210  SSRCQEIIIGAYASQKAYKANF------TNGNIYSAGVDFLRYLATTFQTKPEFILSKWE 263

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
             K    + ++        + S    D +                     + + E  N+++
Sbjct: 264  SKSGFEMISKNIEGKHDFTNSSHILDDT-----------------AKDCITIWECINQKD 306

Query: 370  EAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426
            E   +A A+R  L +  +     ++  D +  +        ++ I         ++    
Sbjct: 307  EVEHVARAIRQKLYQGYRYKDILVLLGDVDSYKLQLSKIFEQYDIPYYFGKAETMAAHPL 366

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
               + SL            +  L K     +    +     A  +   +       +  +
Sbjct: 367  VHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQDDLDYFEAYISYADIKGPKKFFTDFV 426

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
            +  K   L R+ T + +   P      +++               I  L  +        
Sbjct: 427  VGAKKFDLGRLNTIRQSLLTPLESFVKTKKQDG------------IKTLNQFMFFLTQVG 474

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
             + ++S          Q               +E  KT + +  +        K N  E+
Sbjct: 475  LSDNLSRLVGQMSENEQEK------------HQEVWKTFTDILEQFQTIFGQEKLNLDEF 522

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            + ++   +     +        + +         +   +   G+ +  +PK       +S
Sbjct: 523  LSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS 582

Query: 666  RVMQS-------DLNLKTAEKYIGQAAHDFEMA----NGTRHLIYTRSLRENNIPTIASR 714
             + +                       + F          + L+ T     N      S 
Sbjct: 583  DIERQLINDANDTDGHFDIMTQENLKKNHFAALSLFNAAKQELVLTIPQLLNESEDQMSP 642

Query: 715  WLQRLLVLGGT--------------------------------DFFDNLKKRGQC-YLDW 741
            +L  L  +G                                       + K  Q  +   
Sbjct: 643  YLVELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQTFWSVA 702

Query: 742  TRKLDYTTKQPHYKRP---------------KPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
             R L         + P                     E  P   S S +    N+ Y  +
Sbjct: 703  VRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDDPLKLSSSALTTFYNNQYKYF 762

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844
             + +L L+        PD    GT  H +   L+K +  ++  E  +        +  F+
Sbjct: 763  LQYVLGLEEQDSIH--PDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQEDVFK 820

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                          +   I+ +      +  S +         ++ I+   I + G  DR
Sbjct: 821  SLYSEDAESRYSLEILEDIARATATILRQD-SQMTVESEEERFELMID-NTIKINGIIDR 878

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEA-AALKAGSFSQIDCRKVANL 960
            ID L  G + + DYK+    +K   QK    + PQL     A  +     Q     +   
Sbjct: 879  IDRLSDGSLGVVDYKSSA--QKFDIQKFYNGLSPQLVTYIDAISRDKEVEQKPP--IFGA 934

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
             Y+ +      +   +  K  + D+L  K+ + L     L    E+ F+++ +   K ++
Sbjct: 935  MYLHM-----QEPRQDLSKIKNLDDLVTKNHQALT-YKGLFSEAEKEFLANGKYHLKDSL 988

Query: 1021 QSE 1023
             SE
Sbjct: 989  YSE 991


>gi|82750583|ref|YP_416324.1| ATP-dependent nuclease subunit B [Staphylococcus aureus RF122]
 gi|123548858|sp|Q2YWU2|ADDB_STAAB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|82656114|emb|CAI80523.1| ATP-dependent nuclease subunit B [Staphylococcus aureus RF122]
          Length = 1158

 Score =  171 bits (433), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 116/966 (12%), Positives = 272/966 (28%), Gaps = 141/966 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L + + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +                 I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDALQYFIDCMPKSEWLKCADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            N  N    R     +S+   +          +    N   C   + ++E+   REE   I
Sbjct: 257  NELNISIERQ-YFKQSYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315

Query: 375  AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            A  + + + +     +  A++  D + A      L  + I  +I     ++      ++ 
Sbjct: 316  ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            SL+  I        +  L+K  +    +     +   + LE   L         +D +  
Sbjct: 376  SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433

Query: 492  VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547
             ++  +      H      R + E   +L   ++D IL     ++   T K    +   +
Sbjct: 434  NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +   +     +T    + L+ +        ++    L  +   ++        +   +++
Sbjct: 494  MEYFELPNQLMTERDELDLNGY-HEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +    ++        +    + I     +++ N   + L G+N+G  P+    +  ++  
Sbjct: 553  VFDIGLEQLEFVVIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612

Query: 668  MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717
             +         +L+  +    + +A   +      + ++ ++ SL   +      S +L 
Sbjct: 613  EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLN 672

Query: 718  RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758
            ++  L       NL +                     +    W              +  
Sbjct: 673  QIQSLFNQLEITNLPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732

Query: 759  PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789
                                                +    S S  +     P+  YA  
Sbjct: 733  RDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848
             LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+    
Sbjct: 793  GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850

Query: 849  -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888
                                 I  + L   +     S           +           
Sbjct: 851  VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910

Query: 889  ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939
                  + I I++ G  DRID   K+    V+I DYK+  G            +  Q+  
Sbjct: 911  QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970

Query: 940  EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994
                +    +    + I   K   L Y  + + + K     +  +     +L +K    L
Sbjct: 971  YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026

Query: 995  IEIVTL 1000
              +V  
Sbjct: 1027 SGLVNA 1032


>gi|154509555|ref|ZP_02045197.1| hypothetical protein ACTODO_02087 [Actinomyces odontolyticus ATCC
            17982]
 gi|153799189|gb|EDN81609.1| hypothetical protein ACTODO_02087 [Actinomyces odontolyticus ATCC
            17982]
          Length = 1078

 Score =  171 bits (433), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 118/1094 (10%), Positives = 283/1094 (25%), Gaps = 145/1094 (13%)

Query: 19   REMIPALLNGTLVENFRYD-PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS-TILP 76
            R ++ A  +G ++         +   LA     V  + A Q   +  +     ++  + P
Sbjct: 43   RAVVDAARSGDVIARGAPSSGRSTCALA-----VFEEAAAQGRSALILAPDRTRADVLTP 97

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL-LELARLILIWRNK--LPDIIKDLYPE 133
              ++LG             +Y +       + + LE   L+        L + ++ +   
Sbjct: 98   RAQALGPDAVRPVRTPASFAYQVVATWRTQRDVPLEGVELVTGAAQDQMLAEALESVDAP 157

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193
             P  +             L +++            L           W  A   +    +
Sbjct: 158  WPEDIGPQMRAMPAFRGELRNLVARAGEAGMDASSLSEAGARFGRPEWQGAGAIIAALEE 217

Query: 194  YWTERLVELN--ASSPVGYQIALMRAEAEHLMKGT----------KGPIIIAGSTGSIPA 241
                               Q                            +I+       P+
Sbjct: 218  GHERSPEYPRTLRVDLSRIQALAADLIDAWEQDAPKRGVQAPCPVPDVVIVDDLQDCTPS 277

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            T RL+        GA ++   D  +  A +                          +L  
Sbjct: 278  TLRLLRACRGA--GARIVAFSDSDVAVAGYRGGEPHLD-----------------RRLAS 318

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VA 360
             L ++  ++ ++ ++S         + +          ++      +           + 
Sbjct: 319  ALGVEIAELGQVYDMS-------RAVRELARQACARIAQSGSPARREAGVADDAPEGALV 371

Query: 361  LIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISA 417
                    +    IA ALR     +        +I    ++       L R G+ +    
Sbjct: 372  THLGATPSQMGALIARALRSHHLHDGIDFSDQVVIVRSSSMVAETSRYLARGGVPVAGGG 431

Query: 418  G-IPLSTTLHSSILTSLLNAIFKLNDFM-AIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                 +T   + +L  L+      +D   A    +   L                L  + 
Sbjct: 432  RAFDFATQPTTRLLLDLVTMPTGTSDTDVAQRRELAERLLPSPLVRADALAIHRLLRRLN 491

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                + + +     + +    A   ++          +E+           + + +    
Sbjct: 492  AARAQAAEEAGGESAPIPLTAADLVSDPQTWRPFIEQAEQAGGKRARAATMLARPLETAA 551

Query: 536  TYKTNK-----NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                              S+ + + +           +          +    L  +   
Sbjct: 552  RLWELGMSGSVRPQERLWSLWEASGVAGEWRSRAIASDDSSGWYDDQLDAVVALLRVADV 611

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
              +      A      +++   +  +T+     +   + +L   ++   ++  ++L GL 
Sbjct: 612  WEQRNPAGSAVG-FASELLAGSVPIDTISRVGVRPGGVEVLTPAQAMGRHWQVVVLAGLQ 670

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNL-----------------KTAEKYIGQAAHDFEMANG 693
            +G WP    ++  L   + +D+                   + A + +    +   +A  
Sbjct: 671  DGAWPNLRLRDRILRADLLADVGAGRVAVGEDGREELIDSTRAARRAVLDDEYRLFVAAV 730

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ------------CYLDW 741
            TR      +    +     S +   +  L GT   +++                      
Sbjct: 731  TRSRSIVHAGAVRSEDAAPSVFFDLVAYLAGTHRENDIVPVDPVEAPLSLSGHIADLRAR 790

Query: 742  TRKLDYTT-----------------------KQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                D                          +                    S S+ ++ 
Sbjct: 791  AANSDEPADAQLAATLLALMAREGIASAQPHRWLGAGGTPTSAQDYRGQIVLSPSQFERA 850

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
            +  P   +   I                  GTL H +  E       + T  +   ++++
Sbjct: 851  LACPLRWFLTTIGADAPSNA------AASLGTLVHAVAEEHPHGTPEELTEALEARIEEL 904

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                    NL      +      +I ++   +            V +   ++ E  G+ +
Sbjct: 905  G------YNLDTWAGRVSDRHAREIVNNLASYVV-----GVPGEVTVEQTVSSEVEGVTI 953

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
             G  DR++ +  G V +TD KTG +   + A    +PQL+    A+ A    ++   ++A
Sbjct: 954  RGRMDRLEQVDEG-VRVTDLKTGKSGYTK-ASVAENPQLAAYQMAMLASG-EKVAGARIA 1010

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018
             L               +  + Y    L  + L+   E V  +    +      R S+++
Sbjct: 1011 LLG-------------GSKPQIYDQPALQGEELERWRESVREVALSARGPYFEARPSQEA 1057

Query: 1019 NIQSEYDHLARVAE 1032
                 +D L    E
Sbjct: 1058 CRYCSFDRLCPARE 1071


>gi|282916217|ref|ZP_06323979.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            D139]
 gi|282319657|gb|EFB50005.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            D139]
          Length = 1158

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 114/966 (11%), Positives = 272/966 (28%), Gaps = 141/966 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L + + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            N  N    R    ++ +   +          +    N   C   + ++E+   REE   I
Sbjct: 257  NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315

Query: 375  AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            A  + + + +     +  A++  D + A      L  + I  +I     ++      ++ 
Sbjct: 316  ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            SL+  I        +  L+K  +    +     +   + LE   L         +D +  
Sbjct: 376  SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433

Query: 492  VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547
             ++  +      H      R + E   +L   ++D IL     ++   T K    +   +
Sbjct: 434  NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +   +     +T    + L+          ++    L  +   ++        +   +++
Sbjct: 494  MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +    ++        +    + I     +++ N   + L G+N+G  P+    +  ++  
Sbjct: 553  VFDIGLEQLEFVMIPQTLDQVSIGMMDLAKVDNKQHVYLVGMNDGTMPQLVTASSLITDE 612

Query: 668  MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717
             +         +L+  +    + +A   +      + ++ ++ SL   +      S +L 
Sbjct: 613  EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLN 672

Query: 718  RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758
            ++  L       N+ +                     +    W              +  
Sbjct: 673  QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732

Query: 759  PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789
                                                +    S S  +     P+  YA  
Sbjct: 733  RDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848
             LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+    
Sbjct: 793  GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850

Query: 849  -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888
                                 I  + L   +     S           +           
Sbjct: 851  VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910

Query: 889  ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939
                  + I I++ G  DRID   K+    V+I DYK+  G            +  Q+  
Sbjct: 911  QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970

Query: 940  EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994
                +    +    + I   K   L Y  + + + K     +  +     +L +K    L
Sbjct: 971  YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026

Query: 995  IEIVTL 1000
              +V  
Sbjct: 1027 SGLVNA 1032


>gi|251782154|ref|YP_002996456.1| ATP-dependent nuclease subunit B [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
 gi|242390783|dbj|BAH81242.1| ATP-dependent nuclease subunit B [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
          Length = 1074

 Score =  171 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 129/989 (13%), Positives = 266/989 (26%), Gaps = 141/989 (14%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P     +     +     K L D+   ++T  
Sbjct: 75   SESKQALDETALAMIFYRVLMQLTPEDLP-----VYGRLKDDPAFIKQLIDLYQELKTAN 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                +L  L             + L        E + + +              E   L 
Sbjct: 130  LSVYELTELDTP-------GKQEDLIRIISLAEELMTQQDYHQDSALMSFAKTIETGQLD 182

Query: 224  KGTKGPI-IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +     + +I G +        L+S + N     ++   +        +    + +    
Sbjct: 183  EQLSKTVLVIDGFSRFSAEEDYLLSLLNNKCQEIVIGSYISQKAYQKPF---IKGNIYEA 239

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            S         QY    +            +   V    + R   + ++       D +  
Sbjct: 240  SIQFLQGIAEQYKTKPI----------YSQSEKVFAPSFSRVTQLFEASHDFSQVDWQLE 289

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADRNLA 399
            +  +           D+ L ++  ++EE   +A A+R  L E  +      L+       
Sbjct: 290  EKDK----------EDIYLWQSHQQKEEIEHVAKAIREKLYEGYRYKDMLVLLGDVDAYQ 339

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
             ++     +F I   +    P++       + SL  +         I  L+K  L     
Sbjct: 340  LQIGPIFDKFEIPYYLGKAEPMTAHPLVQFIESLERSQRYNWRREDILNLLKSGLFGRFA 399

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                                       DL                       ++      
Sbjct: 400  D-------------------------SDLDRFEEYLQFADIKGFTKFSRPFTINSSRHYP 434

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT--VTCLQNVCLDEHRKLPNLWF 577
              LL +      + L     ++     +L +         V   +N+      +L     
Sbjct: 435  LELLNEVREAVFSSLQALFKSQKQLGTSL-LDKLMTFFKDVQLAENMKSLGQNELEIEKN 493

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE  KT + + +   +     K    + + +I   +     +        + I      +
Sbjct: 494  EEVWKTFTGVLTSFYQIFGQEKLKLADCLSLIKMGMQSAHYRIVPATLDVVSIKSYDLVQ 553

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG------------QAA 685
              +   +   GL +  +PK   +   LS   ++ +N  T                  Q A
Sbjct: 554  PHSKPFVYAIGLTQSHFPKQVKETGLLSDQERARINEITDSFQHFDIGSIENSKKNHQTA 613

Query: 686  HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT-------------------- 725
                 A  T+ L+ +     N      S +L+ L+  G                      
Sbjct: 614  LSLLNA-ATQELVLSVPAVVNEFSDDLSPYLKELMSFGLPLIDKGSNRFSYAASDIGNYK 672

Query: 726  ------------DFFDNLKKRG-----QCYLDWTRKL-----------DYTTKQPHYKRP 757
                            ++ ++             R+L           D+   +P     
Sbjct: 673  ALLSRLVDLNREAIVADMTEQDKTFWTVALRYLRRQLRHHQVTLPMLDDHLVTKPLASEV 732

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
                    +P   S + +    N+ Y  + + +L L         PD    G   H +  
Sbjct: 733  IEARFPSDRPLRLSSTALTVFYNNQYKYFLQYVLGLQEAESIH--PDARIHGQYLHRVFE 790

Query: 818  ELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
             ++      +              +  F+        D     L   I+ S        Q
Sbjct: 791  LVMTDHTAASFDSKLAQAIHQTNQEKEFQYIYQDSAEDRFSLDLLEDIAKSTASILRLNQ 850

Query: 876  SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLID 934
            + +       P  + +    + + G  DRID L  G + I DYK+  N          + 
Sbjct: 851  N-MTVSRQEEPFALHVTDQ-VVVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGKFYNGLS 908

Query: 935  PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            PQL    AAL+       D   +    Y+ L++                D+L E   K L
Sbjct: 909  PQLVTYLAALQQQLGPD-DLGHLFGAMYLHLQEPKLDLASFK----ALDDKLVESIYKEL 963

Query: 995  IEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
                 +    E+ ++++     ++ + S 
Sbjct: 964  T-YKGIFLESEKEYLANGAYQTRNALYST 991


>gi|116494974|ref|YP_806708.1| ATP-dependent nuclease, subunit B [Lactobacillus casei ATCC 334]
 gi|122263608|sp|Q038V6|ADDB_LACC3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|116105124|gb|ABJ70266.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactobacillus casei
            ATCC 334]
          Length = 1179

 Score =  171 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 108/951 (11%), Positives = 233/951 (24%), Gaps = 129/951 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIASKY 194
            L++    A+       LAD +  + T     EDL+             A    L I   +
Sbjct: 114  LTIYAGEAHNTGFVTQLADQLSELVTGRITAEDLNTTVAALTPGDRHRAKLRDLGIILDH 173

Query: 195  WTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            +           P     +L+    +       +   I +        +   L+ T+   
Sbjct: 174  YEAE------IGPYATNASLLSGLQQVMRNQDLSHTFIYLNDFNVFSASETGLVETMIET 227

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                 V   LD   P A                     H  Y  AK +          K 
Sbjct: 228  AAEVTVSLVLDKPYPAAPPVAPNLFLPAGRLY------HRLYQKAKTMKVPIRLDRFAKP 281

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                    +                  + +  L+ + P       +V L  A +   E  
Sbjct: 282  RPLSEGMKH-------------LADWWQTSTNLQPQAPAQTAQNKEVELAVATDPYHELR 328

Query: 373  SIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
            ++A  +  ++ +  +      L       A  +      F I        P+       +
Sbjct: 329  TVARQIYQAVRQGARYRDFLILARRLDPYAAVIPAIFEEFNIPQFTDLERPMKDHPLVVL 388

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            + SL         +  +  L+   L             A +  +   +R           
Sbjct: 389  IESLFAIQDHDYQYQDVMRLLHTELLLPENMDIAAFRDALDTTDNHLVRTGITGKKRWTQ 448

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                         +      ++  + +   +  L+ D + Q +    T KT + +     
Sbjct: 449  TDPWRYFQRNPNADDSQLDPEADKTAQINAIKTLVADTVPQLLRQWQTAKTGREAAASLY 508

Query: 549  SISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                 T +       +     +     +   E+   T + L +           N  ++ 
Sbjct: 509  QWLQTTGVIDQLNVWRQTANADGDLSRSQANEQAWDTFTQLLNDYATILGEADFNRDQFR 568

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            +++       T         ++ I  T   RL     + + G      P     +  L+ 
Sbjct: 569  ELLAAGFASATYTQIPSTLDSVVISETGLVRLAKAKHVYVIGATNTAMPDVPNDSGVLNS 628

Query: 667  VMQSDLNLKTAEKYIGQAA-----------HDFEMANGTRHLIYTRSLR--ENNIPTIAS 713
              +  L  +  +                  +       +  L  +  ++  + N    AS
Sbjct: 629  EERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASEKLTLSYPMQNTQENSENQAS 688

Query: 714  RWLQRLLVL---------------------------------GGTDFFDNLKKRGQCYLD 740
             + ++L                                       +         + +  
Sbjct: 689  PYFRQLAQALQLTPATWAPAGLGTSLKAVLGSQRAMLSDFVRAAGEAQHQKLPLSRSWQG 748

Query: 741  WTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                L  TT  P  ++               P     L  +    S S ++    + +  
Sbjct: 749  VLASLKQTTLAPLAQKLAGSLTYQNDPGRLDPTLAVQLYGRDMNVSVSRLETYYRNQFEY 808

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-----------TPEINHL 834
            + +  L L   P F+      D G+LFH ++ + + +  +                +  L
Sbjct: 809  FLKYGLLLQPRPEFE--LSPADTGSLFHAVLDQYLTQLRDAGQTLADVTAADVAAAVPPL 866

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA----- 887
            +  I      +     H          ++    L    +++ ++    +   +       
Sbjct: 867  VAAITKRPGYEILGSTHRMAYLTSRLSRLLIQVLTNMRQQQRRTGFRPMRTELQFGRIGD 926

Query: 888  -------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYK-TGDNPKKETAQKLIDP 935
                      +   G +++ G  DR+D+ +        + DYK T        A   I  
Sbjct: 927  TRGLPGLSWPLPHGGRVNVRGKIDRLDVYRESDAQRFMVVDYKSTQHRFDDSDAYYGIAL 986

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
            Q+     A+             A   Y  L+          D         
Sbjct: 987  QMLTYVEAMAN--VPADPPFVPAGALYFHLQDPKFKFSTDLDLDIDRLKAF 1035


>gi|301066541|ref|YP_003788564.1| ATP-dependent nuclease subunit B [Lactobacillus casei str. Zhang]
 gi|300438948|gb|ADK18714.1| ATP-dependent nuclease, subunit B [Lactobacillus casei str. Zhang]
          Length = 1179

 Score =  171 bits (432), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 108/951 (11%), Positives = 233/951 (24%), Gaps = 129/951 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIASKY 194
            L++    A+       LAD +  + T     EDL+             A    L I   +
Sbjct: 114  LTIYAGEAHNTGFVTQLADQLSELVTGRITAEDLNTTVAALTPGDRHRAKLRDLGIILDH 173

Query: 195  WTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            +           P     +L+    +       +   I +        +   L+ T+   
Sbjct: 174  YEAE------IGPYATNASLLSGLQQVMRNQDLSHTFIYLNDFNVFSASETGLVETMIET 227

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                 V   LD   P A                     H  Y  AK +          K 
Sbjct: 228  AAEVTVSLVLDKPYPAAPPVAPNLFLPAGRLY------HRLYQKAKTMKVPIRLDRFAKP 281

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                    +                  + +  L+ + P       +V L  A +   E  
Sbjct: 282  RPLSEGMKH-------------LADWWQTSTNLQPQAPAQTAQNKEVELAVATDPYHELR 328

Query: 373  SIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
            ++A  +  ++ +  +      L       A  +      F I        P+       +
Sbjct: 329  TVARQIYQAVRQGARYRDFLILARRLDPYAAVIPAIFEEFNIPQFTDLERPMKDHPLVVL 388

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            + SL         +  +  L+   L             A +  +   +R           
Sbjct: 389  IESLFAIQDHDYQYQDVMRLLHTELLLPENMDIAAFRDALDTTDNHLVRTGITGKKRWTQ 448

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                         +      ++  + +   +  L+ D + Q +    T KT + +     
Sbjct: 449  TDPWRYFQRNPNADDSQLDPEADKTAQINAIKTLVADTVPQLLRQWQTAKTGREAAASLY 508

Query: 549  SISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                 T +       +     +     +   E+   T + L +           N  ++ 
Sbjct: 509  QWLQTTGVIDQLNVWRQTANADGDLSRSQANEQAWDTFTQLLNDYATILGEADFNRDQFR 568

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            +++       T         ++ I  T   RL     + + G      P     +  L+ 
Sbjct: 569  ELLAAGFASATYTQIPSTLDSVVISETGLVRLAKAKHVYVIGATNTAMPDVPNDSGVLNS 628

Query: 667  VMQSDLNLKTAEKYIGQAA-----------HDFEMANGTRHLIYTRSLR--ENNIPTIAS 713
              +  L  +  +                  +       +  L  +  ++  + N    AS
Sbjct: 629  EERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASEKLTLSYPMQNTQENSENQAS 688

Query: 714  RWLQRLLVL---------------------------------GGTDFFDNLKKRGQCYLD 740
             + ++L                                       +         + +  
Sbjct: 689  PYFRQLAQALQLTPATWAPAGLGTSLKAVLGSPRAMLSDFVRAAGEAQHQKLPLSRSWQG 748

Query: 741  WTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                L  TT  P  ++               P     L  +    S S ++    + +  
Sbjct: 749  VLASLKQTTLAPLAQKLAGSLTYQNDPGRLDPTLAVQLYGRDMNVSVSRLETYYRNQFEY 808

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-----------TPEINHL 834
            + +  L L   P F+      D G+LFH ++ + + +  +                +  L
Sbjct: 809  FLKYGLLLQPRPEFE--LSPADTGSLFHAVLDQYLTQLRDAGQTLADVTAADVAAAVPPL 866

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA----- 887
            +  I      +     H          ++    L    +++ ++    +   +       
Sbjct: 867  VAAITKRPGYEILGSTHRMAYLTSRLSRLLIQVLTNMRQQQRRTGFRPMRTELQFGRIGD 926

Query: 888  -------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYK-TGDNPKKETAQKLIDP 935
                      +   G +++ G  DR+D+ +        + DYK T        A   I  
Sbjct: 927  TRGLPGLSWPLPHGGRVNVRGKIDRLDVYRESDAQRFMVVDYKSTQHRFDDSDAYYGIAL 986

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
            Q+     A+             A   Y  L+          D         
Sbjct: 987  QMLTYVEAMAN--VPADPPFVPAGALYFHLQDPKFKFSTDLDLDIDRLKAF 1035


>gi|227535022|ref|ZP_03965071.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus paracasei
            subsp. paracasei ATCC 25302]
 gi|227187337|gb|EEI67404.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus paracasei
            subsp. paracasei ATCC 25302]
          Length = 1179

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 107/951 (11%), Positives = 233/951 (24%), Gaps = 129/951 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIASKY 194
            L++    A+       LAD +  + T     EDL+             A    L I   +
Sbjct: 114  LTIYAGEAHNTGFVTQLADQLSELVTGRITAEDLNTTVAALTPGDRHRAKLRDLGIILDH 173

Query: 195  WTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            +           P     +L+    +       +   I +        +   L+ T+   
Sbjct: 174  YEAE------IGPYATNASLLSGLQQVMRNQDLSHTFIYLNDFNVFSASETGLVETMIET 227

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                 V   LD   P A                     H  Y  AK +          K 
Sbjct: 228  AAEVTVSLVLDKPYPAAPPVAPNLFLPAGRLY------HRLYQKAKTMKVPIRLDRFAKP 281

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                    +                  + +  L+ + P       +V L  A +   E  
Sbjct: 282  RPLSEGMKH-------------LADWWQTSTNLQPQAPAQTAQNKEVELAVATDPYHELR 328

Query: 373  SIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
            ++A  +  ++ +  +      L       A  +      F I        P+       +
Sbjct: 329  TVARQIYQAVRQGARYRDFLILARRLDPYAAVIPAIFEEFNIPQFTDLERPMKDHPLVVL 388

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            + SL         +  +  L+   L             A +  +   +R           
Sbjct: 389  IESLFAIQDHDYQYQDVMRLLHTELLLPENMDIAAFRDALDTTDNHLVRTGITGKKRWTQ 448

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                         +      ++  + +   +  L+ D + Q +    T KT + +     
Sbjct: 449  TDPWRYFQRNPNADDSQLDPEADKTAQINAIKTLVADTVPQLLRQWQTAKTGREAAASLY 508

Query: 549  SISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                 T +       +     +     +   E+   T + L +           N  ++ 
Sbjct: 509  QWLQTTGVIDQLNVWRQTANADGDLSRSQANEQAWDTFTQLLNDYATILGEADFNRDQFR 568

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            +++       T         ++ I  T   RL     + + G      P     +  L+ 
Sbjct: 569  ELLAAGFASATYTQIPSTLDSVVISETGLVRLAKAKHVYVIGATNTAMPDVPNDSGVLNS 628

Query: 667  VMQSDLNLKTAEKYIGQAA-----------HDFEMANGTRHLIYTRSLR--ENNIPTIAS 713
              +  L  +  +                  +       +  L  +  ++  + +    AS
Sbjct: 629  EERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASEKLTLSYPMQNTQESSENQAS 688

Query: 714  RWLQRLLVL---------------------------------GGTDFFDNLKKRGQCYLD 740
             + ++L                                       +         + +  
Sbjct: 689  PYFRQLAQALQLTPATWAPAGLGTSLKAVLGSQRAMLSDFVRAAGEAQHQKLPLSRSWQG 748

Query: 741  WTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                L  TT  P  ++               P     L  +    S S ++    + +  
Sbjct: 749  VLASLKQTTLAPLAQKLAGSLTYQNDPGRLDPTLAVQLYGRDMNVSVSRLETYYRNQFEY 808

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-----------TPEINHL 834
            + +  L L   P F+      D G+LFH ++ + + +  +                +  L
Sbjct: 809  FLKYGLLLQPRPEFE--LSPADTGSLFHAVLDQYLTQLRDAGQTLADVTAADVAAAVPPL 866

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA----- 887
            +  I      +     H          ++    L    +++ ++    +   +       
Sbjct: 867  VAAITKRPGYEILGSTHRMAYLTSRLSRLLIQVLTNMRQQQRRTGFRPMRTELQFGRIGD 926

Query: 888  -------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYK-TGDNPKKETAQKLIDP 935
                      +   G +++ G  DR+D+ +        + DYK T        A   I  
Sbjct: 927  TRGLPGLSWPLPHGGRVNVRGKIDRLDVYRESDAQRFMVVDYKSTQHRFDDSDAYYGIAL 986

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
            Q+     A+             A   Y  L+          D         
Sbjct: 987  QMLTYVEAMAN--VPADPPFVPAGALYFHLQDPKFKFSTDLDLDIDRLKAF 1035


>gi|218288827|ref|ZP_03493078.1| ATP-dependent nuclease subunit B-like protein [Alicyclobacillus
            acidocaldarius LAA1]
 gi|218240916|gb|EED08093.1| ATP-dependent nuclease subunit B-like protein [Alicyclobacillus
            acidocaldarius LAA1]
          Length = 1169

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 118/1031 (11%), Positives = 279/1031 (27%), Gaps = 126/1031 (12%)

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK-- 173
            +     +L         E  L           L  +L    D +       E L AL   
Sbjct: 86   LTQVGRQLLLRAAYDELEPSLGPLRRAVRNPSLYHHLLSAFDELTAHGVSPEQLAALLEL 145

Query: 174  ---NEKYGMWWLLA--------ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                         A           +      + +       + P    +  + A   H+
Sbjct: 146  SAARSDEVEEKQRAVHRSLVGKLGDVMKLYVRYRQLAEAAGFADPALLYLDAVHA-VPHV 204

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
                   +   G     PA  + +ST+A      ++    D  +    W+ + E++++  
Sbjct: 205  SWLEDASLYFDGFHAFSPAERQFISTLARRAKRLVITWE-DTGLEGERWDALLEEASSPA 263

Query: 283  SSNTTYS---THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +     +    H +   ++          +  R     +       +   +      +  
Sbjct: 264  AWPHLSAWVDAHEERFSSESQAVAAYHLLECARDFAQVSLDQAFCRMPIGAPEGRFGASP 323

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKKKSALITADR 396
                         ++    V +    +  EE  ++A  +           +  A+     
Sbjct: 324  LVHLERALAGHAPEQPIRGVRVSVFGDRAEELCAVADEIAHLVQHERVRPRDIAVCVPTL 383

Query: 397  NLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            +   R    EL   G+ + I A   L+      +L   + A     D  A+A L++ PL 
Sbjct: 384  DGIGRDLADELALRGVPVSIDAFSTLADHPVGQLLRGAIAAARTGFDLDAVAALLRCPLV 443

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                 E +    +                    ++    R A+   +      +  + + 
Sbjct: 444  PVKRREAFDLYLREHGVRGFAAWLAPEPWAFAARA---PRSASGLRDEEADEIRRHVGDA 500

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             + +        L+             +     +++          Q+V       +  +
Sbjct: 501  LRPVVQAFAQPTLRPAEAARALWELVQAFRVKDALA----------QSVVQVGDDPMAGV 550

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              E+    +++L   +      I   A E  D++   +    +         +F+     
Sbjct: 551  IHEQAWSGVTALLDDLATLEPEIALPAYEVADLVLESMASLRLTRIPSDVDAVFVCDFAR 610

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ--------SDLNLKTAEKYIGQAAHD 687
            +   +   + +   ++   P     +  L    +          L   + ++        
Sbjct: 611  ADNWSRPRVFVVAADDASLPPRVEPSGILRDDERLAFAEVFLRPLGRTSEDERRALECMP 670

Query: 688  FEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLG--------GTDFFDNLKKRGQCY 738
            + +       L+ T +     I    +  L  L+  G        G         +    
Sbjct: 671  YRVMTRASEALVVTYAASVGGIERHLAPALSSLVERGHLSVDVARGEGVVPVHPVQAMRL 730

Query: 739  LDWT-------RKLDYTTKQPHY---------------------------KRPKPFPPLE 764
            L           +LD   + P                              RP   P   
Sbjct: 731  LADALSRVHTGARLDEVAQDPVVQDVLTHVLTGAGDVARFHRVLAGLCHRPRPWQLPADW 790

Query: 765  AQP-----RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
             +         S S ++      Y  +A+  L+L+ +    +     D GT  H  +   
Sbjct: 791  IRHLYGDPIRVSVSRLETHAKCSYRHFAQYALRLEPLALQPEAE--RDAGTWIHAAVQLA 848

Query: 820  IKKRINKNTPEIN---HLMKQIIDSH-------------FEKENLPPHIDIIWRHLFHKI 863
             ++               ++Q +                 E     P +  ++     + 
Sbjct: 849  TQRLAEAYPRLAALGDEELEQALREIADQALAQAAADTKLESTLARPDV-AVYVEDRRRH 907

Query: 864  SHSFLE--HEEKIQSSIEKIFVNIPAK----MAIESIGIHLTGFADRIDLLKSGFVD--I 915
                +     +  +  +  +++    +     A   + + L G  DR+D L+ G +   +
Sbjct: 908  FEFVVRAIWMQLARGQMRPLWLEKEFRDVDMGAWNGLRVVLDGRIDRVDRLEQGELALCV 967

Query: 916  TDYKTGDNP-KKETAQKLIDPQLSLE-AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
             DYK+ +         + +  QL +  A A++    ++ +  ++   FY+ L  K     
Sbjct: 968  YDYKSSETSLHPSKVYQGLQLQLLMYAAMAMREAEAAEGELARMYGAFYVPLTVKRDPLD 1027

Query: 974  ITNDKKKYSADELSEKSLKNL---IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA-- 1028
            +  D+ K SA+  + ++          V  +     P  S +   ++      +   +  
Sbjct: 1028 VPPDRSKVSAELGAYRAKGFFLRDESAVVRVNEDLAPGRSPVVYGKQFRNDGAWAGNSTA 1087

Query: 1029 -RVAEWREEYD 1038
             R  EW+   D
Sbjct: 1088 WREDEWQAVLD 1098


>gi|258424347|ref|ZP_05687227.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9635]
 gi|257845360|gb|EEV69394.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9635]
          Length = 1158

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 112/966 (11%), Positives = 273/966 (28%), Gaps = 141/966 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L + + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKELIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                N   S     +     + ++ + L+I  E      
Sbjct: 225  SVTIILTTD--------------GNNDQFSLFRKPSEVLQHIEEIANELNISIE------ 264

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                         ++ +   +          +    N   C   + ++E+   REE   I
Sbjct: 265  ---------RQYFNQFYRFNNQDLKHLEQEFDAFQINRVACQGHINILESATMREEINEI 315

Query: 375  AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            A  + + + +     +  A++  D + A      L  + I  +I     ++      ++ 
Sbjct: 316  ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            SL+  I        +  L+K  +    +     +   + LE   L         +D +  
Sbjct: 376  SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433

Query: 492  VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547
             ++  +      H      R + E   +L   ++D IL     ++   T K    +   +
Sbjct: 434  NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILYFEKQMSQAATVKDFATAFYES 493

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +   +     +T    + L+          ++    L  +   ++        +   +++
Sbjct: 494  MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMDRFLE 552

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +    ++        +    + I     +++ N   + L G+N+G  P+    +  ++  
Sbjct: 553  VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612

Query: 668  MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717
             +         +L+  +    + +A   +      + ++ ++ SL   +      S +L 
Sbjct: 613  EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLT 672

Query: 718  RLLVLGGTDFFDNLKKRGQCYL------------DWTRKL-----DYTTKQPHYKRPKPF 760
            ++  L       N+ +  +                    L     D           +  
Sbjct: 673  QIQALFNRLEITNIPRYHEVAPLSLMQHVKQTKIALFEALRSWLDDEIVADSWLDAYQVI 732

Query: 761  PPLEAQPRTY-------------------------------SFSEIKQLINDPYAVYARR 789
               +   +                                 S S  +     P+  YA  
Sbjct: 733  RDSDHLNQGLDYLMSALTFDNETVQLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848
             LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+    
Sbjct: 793  GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850

Query: 849  -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888
                                 I  + L   +     S           +           
Sbjct: 851  VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910

Query: 889  ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT---GDNPKKETAQKLIDPQLSL 939
                  + I I++ G  DRID   K+    V+I DYK+               +  Q+  
Sbjct: 911  QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSAILDLTKVYYGMQMQMMT 970

Query: 940  EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994
                +    +    + I   K   L Y  + + + K     +  +     +L +K    L
Sbjct: 971  YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026

Query: 995  IEIVTL 1000
              +V  
Sbjct: 1027 SGLVNA 1032


>gi|296130311|ref|YP_003637561.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
 gi|296022126|gb|ADG75362.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
          Length = 1076

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 124/1017 (12%), Positives = 264/1017 (25%), Gaps = 114/1017 (11%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-VS 104
             V +   ++RA  +LR       G+ +   P++++   V      A         P  VS
Sbjct: 77   DVLVLAASRRAAADLRDRLAVRLGRTAGR-PLVQTAPAVAFAVLRARAGALGEPAPVLVS 135

Query: 105  NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
              ++ + LA L+    +          P  P S+P +   A      L D++        
Sbjct: 136  GPEQDVALAELLAGHASGEVP-----GPAWPASVPEAALGARAFRDELRDLLMRAAERGL 190

Query: 165  KWEDLHALKNEKYGMWWLLAADFLKIASKYWT---------ERLVELNASSPVGYQIALM 215
               DL AL   ++   W+ AA   +                ERL            +   
Sbjct: 191  TPADLAALGRREHRPAWVAAARVYEEYLDVMALAAGTPDAGERLDPAVVVDAAVAALRAW 250

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              E   +    +  +++     S  ATARL+   A+   GA +L   D  +    +    
Sbjct: 251  DEEVPGVPCPRRRLVVVDDHQESTTATARLLRAFAD--GGAHLLLLGDPDVAVQTFRGAQ 308

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   ++ T         +      L         L  V+  +  R            
Sbjct: 309  PTLLAAAAAPTGPGASGAAHVV-----LRTVWRQTGPLREVTARITERVPTSGTVVHRRA 363

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALI 392
            +      D    ++  +             +  +EA  +A  LR +  +        A++
Sbjct: 364  SVPPERADGPAPRVAVL------------PSAAQEAAWVAYRLRRAHLQGGVPWQEMAVL 411

Query: 393  TADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFKL--NDFMAIATL 449
                + A  ++  L + G+ + +    +PL        L   +         D    A L
Sbjct: 412  ARTGSRATALRRALAQAGVPVRVVGSDVPLRDEPAVRPLLDAVRVALAPDELDAEVAARL 471

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
               PL           R     E +A  G ++              +             
Sbjct: 472  ACSPLGGLDAVGLRRVRRALRAEELAGGGGRS----------SDALLVEALAEPGRTATL 521

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
                    +    L+          V     +         +   +              
Sbjct: 522  EPHVGRPVQRLATLLQAGRDAAA--VPGADVQAVLWAVWDRAGLAEPWRRSALAGGAGGE 579

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
            R   +L         +  F + +   +        ++D +              +++ + 
Sbjct: 580  RADRDLDAVLALFRAAETFVERMPQAA-----PRAFVDWVMAQDLPADSLAPASRAAGVS 634

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM-------QSDLNLKTAEKYIG 682
            +L    +   +++ + + G+ EGVWP    ++  L           ++       E    
Sbjct: 635  VLTPAGAAGGSWEVVAVVGVQEGVWPDLRLRDSLLGAQTLVDLLAGRATAGGPGEEHARA 694

Query: 683  QAAHDFE------MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
              A              +R          ++     S +L  +      D  D  +    
Sbjct: 695  ARAAVLADELRAFALACSRARTLLLVTAVDDQDATPSPFLDLVQPGADDDGPDPRRTSAP 754

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA--------- 787
              LD    +            +      A       +       DP + +          
Sbjct: 755  APLDLRGLVARLRGVLERAALEGRTDERAARTLARLAAHGVPGADPASWFGLPEPSSDDP 814

Query: 788  -----------------RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
                              +   L +          +        ++  + +     + P 
Sbjct: 815  LWPAEVKVPVSPSRLETAQRCTLRWALEAAGGTPASSAQQSLGTLVHAIAQDHPTADLPT 874

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
            +   + +         +  P +    R     +      +    + + E + V  P  + 
Sbjct: 875  LRAELDRRGAE-LALGDGWPAVAA--RRKADAMLERLAAYL---RGAGEPLLVEAPFAVE 928

Query: 891  IESIGIHLTGFADRIDLL------KSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAA 943
             +     + G  DR++         SG V++ D KTG   P    A +    QL     A
Sbjct: 929  TDRA--VVRGSIDRVERALVEGDGASGAVEVVDLKTGSRVPSVAQAAEHA--QLGAYQLA 984

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
            + AG+   +     +    +              ++    +E      + L++ V  
Sbjct: 985  VDAGAVPGLAPGTHSVGARLVHLAHGSGGPTQRRQEGLGPEETGPSWARELVDEVAD 1041


>gi|300741872|ref|ZP_07071893.1| helicase, UvrD/Rep family [Rothia dentocariosa M567]
 gi|300381057|gb|EFJ77619.1| helicase, UvrD/Rep family [Rothia dentocariosa M567]
          Length = 1172

 Score =  170 bits (431), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 143/1168 (12%), Positives = 286/1168 (24%), Gaps = 208/1168 (17%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
            AP +     +I A ++      F     +P   A + +  PT+     +R E      + 
Sbjct: 9    APGTGKTERVITAAVD------FLNAGGDP---ARLLVLTPTRAGATRVRDELARRIDRS 59

Query: 72   STILPI----IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
             +  P       +   +     +  L         +S  ++ + +  ++   R      +
Sbjct: 60   MSTAPTRAWAAYAFDLLRRAHVSGLLPGVEFAPKLLSGPEQDVMIGEILAGHREGKGAAV 119

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
            +        +            + + D  D I       E+L  L        W   A  
Sbjct: 120  R------WPADLHEALGTRGFRQEIRDFFDRIAEYALTAEELENLAQTLDRPAWHSVAQL 173

Query: 188  LKIASKYWTERLVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                 +    RL   NA  P           L   E     +     I+I  +    P+ 
Sbjct: 174  YTEYQQI--RRLRAPNAYDPAALIHEACAFLLANPEYLREERARFDLILIDDAQELSPSV 231

Query: 243  ARLMSTVANHPNGAIVLP--GLDCHIPTAIWNTITEKSTN----------ITSSNTTYST 290
             RLM  +     G ++ P  G       A +                     +     +T
Sbjct: 232  YRLMRILVGREPGQVLAPYRGDQREALEAAFTPSARVLITCCTETVVQGFRGARPDLAAT 291

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR---------- 340
             PQ       + L         +      +  R  VI+ +  P +               
Sbjct: 292  LPQIFPELQREELKTSYCMNAPITLAWRNIARRLPVIANAPTPREPQTAPSKYEESALLR 351

Query: 341  -NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396
             + D       +  +    V      + ++EA  +A  L            +SA+I    
Sbjct: 352  LSDDGDLLDPRHSDELPEGVFGYLLGSPQDEANQVAQLLLEDYLYRGAAYARSAIIVRSG 411

Query: 397  NLARRVKLELTRFGIN-IDISAGIPLSTTLHSS-ILTSLLNAIFKLNDFMAIATLVKH-- 452
                R +  L   GI  +  +A +P+         L +L   ++          L  H  
Sbjct: 412  TEVTRFRRVLAASGIPTVTGAALVPVRDEPAVRPFLDALSLLVYARQQSADYLKLPDHND 471

Query: 453  ------------------PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                                +     EK   ++   +     R N  S     +  L   
Sbjct: 472  FDGSLTENITSEAVTEEGTRSADDEAEKLARQSLADVLAEENRTNPGSGAHNAITLLTSR 531

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                          Q R +E          D +L  +                       
Sbjct: 532  LGGASSMEVRRLRQQLRAAELRAGGHRCSDDLLLGALLNPQALPAQGIGAAVRRVARVLA 591

Query: 555  KLTVTCLQNVCLDEHRKLPNL------------------WFEEEGKTLSSLFSKIIETGS 596
                   +     E                           E   + L ++         
Sbjct: 592  AGHKALTERGANAETVLWALWQASGLEKIWVTESAQTGPEAERAHRNLDAMIGLFEAATR 651

Query: 597  CIKANAIEWIDII-----TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
             +        ++       + +  +T+  + ++   + IL    +   ++ T+ + GL +
Sbjct: 652  FVDQMPGSSAELFLDYIDAQDLPMDTLAARGKRYDAVEILTPALAAGRHWQTVYVCGLQD 711

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-----IYTRS---- 702
            G WP  T +   L     +D+              D   A     L       +R+    
Sbjct: 712  GTWPNTTVRGSLLKAGELTDICDMGIAAAQQVRMSDRVRAVRHDELRMFSTAISRANERL 771

Query: 703  --LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
                 ++     S +   L+    T    +++ R         +L    +          
Sbjct: 772  VVTAVSSTEDAPSEFFDILVPDARTADITHVR-RPMTLRALVAELRRYAQAQDTDPTLAN 830

Query: 761  P------------------------------------------------PLEAQPRTYSF 772
                                                               E      S 
Sbjct: 831  AAAAQLNRLAQAGAPGAAPEQWWGLLPLSTEQNAFISHPHRDGLSTDSGDPEKLTVPVSP 890

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            S I+ +   P   +      +       +       GTL H I  E              
Sbjct: 891  SRIETIHKSPLDWF------VSAARAEAQTDTSRSLGTLIHAIAEEY--------PDADY 936

Query: 833  HLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAKM 889
              ++  ++       LP   +    R    K+      +  +I      E + V    ++
Sbjct: 937  MTLRGQLEERLSTLALPDTWEGQQIRERAEKMVDKLAVYINEIMPGDHRELVGVEGAFRV 996

Query: 890  AIESIGI--HLTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKA 946
             +    +   ++G  DR++  + G   I D KTG   P K    +    QL+    A++A
Sbjct: 997  LVPGDTVNAQISGRVDRLEKTEDGRYVIVDLKTGKTKPNKNQIAEHA--QLAAYQVAVEA 1054

Query: 947  GSFS-----------------------------QIDCRKVANLFYIRLKQKFKIDCITND 977
            G+                               ++  RK      ++L            
Sbjct: 1055 GAGDAMSRDFGVEPDGLNIPAGLEHREVAPQRFEVFTRKSGGAALVQLGDGTAASSRNRP 1114

Query: 978  KKKYSADELSEKSLKNLIEIVTLLQNGE 1005
            +++ + D  +      L++    L  G 
Sbjct: 1115 QEQDALDPETGIWAVQLVQRAAELIAGA 1142


>gi|313201053|ref|YP_004039711.1| DNA helicase/exodeoxyribonuclease v subunit b [Methylovorus sp.
            MP688]
 gi|312440369|gb|ADQ84475.1| DNA helicase/exodeoxyribonuclease V, subunit B [Methylovorus sp.
            MP688]
          Length = 889

 Score =  170 bits (431), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 95/636 (14%), Positives = 197/636 (30%), Gaps = 55/636 (8%)

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI-FKLNDFMAI 446
            + A +  +      V+  L       D S G+PL+T        +LL     +  +    
Sbjct: 235  RLAALLDEVLHPVTVRPGLVEADRAYDFSLGLPLNTQPVVHAALALLRIFWQQRIEQQDF 294

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            + L+ +P       E       ++     L    +   ++ L   + +            
Sbjct: 295  SVLLLNPYWSASLGEADARAQLDSRMRQWLPQTVSMMRLLRLIERLQEGENPLP------ 348

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                                I Q +  L      + +       S W       L  +  
Sbjct: 349  --------------------IGQLLQDLRAGWAVREAQPRRQLPSLWAAEFEQLLAALQW 388

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
               R + +  F+ +     SL +           N ++ +  +  L   +  +P++    
Sbjct: 389  PGERSISSHEFQAQRAFSRSLQALARLDVFGDTLNGMQALQRLGELCREQIFQPEVSGDP 448

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA- 685
             + ++G LE      D L + G+N+ VWP     NP +   +Q    +  A+  +  A  
Sbjct: 449  PVQVMGMLEGAAAPLDALWVMGMNDHVWPPPPRPNPLIPATVQRAAGVPNADSAVQTAFA 508

Query: 686  --HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                  + +    ++++ +L++      AS  L  + V  G         + Q   +   
Sbjct: 509  RILHQRLLHTAPLIVFSSALKDGERQLRASPILSDIPVFDGD------WAKAQTLAEQLA 562

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
              ++   Q       P    E +  +     +K     P   Y +  L    +       
Sbjct: 563  HGEHAALQVLDDHMAPAV-GEGEHVSGGTGLLKAQAICPAWAYYQYRLGARELKAPVNGL 621

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID-----------SHFEKENLPPHI 852
            +  +RGTL H ++    + R       ++                   +    E L P  
Sbjct: 622  EPAERGTLVHGVLQHFWQGRDLAYLQALDAEELHAALAEAAQQALQDFAAERDETLSPAF 681

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
              + +    K+  ++L  E+  +     +      K+ IE + I L    DRID L  G 
Sbjct: 682  CQLEQERLIKLVSAWLAFEKTREVDFSVLDCERDTKVMIEGVEIRL--VLDRIDQLPDGR 739

Query: 913  VDITDYKTGDNPK--KETAQKLIDPQLSLEAAALK---AGSFSQIDCRKVANLFYIRLKQ 967
            V I DYKTG  P        ++ +PQL + AA        +       +     +  +  
Sbjct: 740  VLIMDYKTGQKPDIRNWAESRITEPQLPVYAAFSLDDGEVAAVSFAMVRTEEHAFSGIAG 799

Query: 968  KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
            +  +  +     + + D    +   +   ++   + 
Sbjct: 800  EEILPALMTLDDRKARDIFDAERFADWHTLLDHWRE 835


>gi|254758684|ref|ZP_05210711.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Australia
            94]
          Length = 1171

 Score =  170 bits (431), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 109/977 (11%), Positives = 251/977 (25%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           + I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        V   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTVTLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321

Query: 369  EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  + E     +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483
                 + S L  I     + A+   VK  L       K  +    +  E   L       
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 484  DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522
                    +  R                         ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +         L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEENGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPF------------LSRVMQSDLNLKTAEKYIGQ 683
              +L+ +   +           T +                +  +     L   E     
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 684  AA----------------------HDFEMA-----NGTRHLIYTRSLRENNIPTIASRWL 716
            A+                      +D           T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKDTFITNDVNDLSRLEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|332975150|gb|EGK12052.1| ATP-dependent deoxyribonuclease subunit B [Desmospora sp. 8437]
          Length = 1079

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 128/1009 (12%), Positives = 270/1009 (26%), Gaps = 194/1009 (19%)

Query: 156  IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
            I  ++    +   L  L               +    + + E L E          +  M
Sbjct: 119  IGELKRAGVRPARLRRLW-GDASEE---KYREMTRVYEVYQELLREFGLLDHEEPFLIAM 174

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                +   +  +  ++            +L+  + +      +  G         W+   
Sbjct: 175  ERVRKGECRLPER-VVAEHFVDLSHLQEQLLVQLVSAGVPVSLHLG---------WDARR 224

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
             +  + T               +L D +                 + R+           
Sbjct: 225  PRLFSET--------------RRLADRM------------SRRGFHIRNPFSPSPGTGKT 258

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALI 392
             + +R  +   +  P        V ++ A  E  E   +  A++  L E+       AL+
Sbjct: 259  EALLRLEEEAFHPSPETVTGQGAVEVLSAPGEAHEVEVVVAAVKQWLLESGAALSDVALV 318

Query: 393  TADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            T        +    L + GI  D    IPLS      ++ S L       +      L+ 
Sbjct: 319  TNRPEEYHPLLFTSLKKAGIPCDRPETIPLSQHPLLGLVRSALALRTGKEELRP--ELLD 376

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            HP   +   +      +  L  +    N   +     +        T+ +   + ++   
Sbjct: 377  HPCLPWSAGQGEGRIWREILREMGHPQNLVDFQQGLARIDPEQFGCTEDSLARLQNFYRW 436

Query: 512  LSEEDKEL-AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            L E   E      V+ +   I PL               +  W            + E  
Sbjct: 437  LEEIPTERSWRGWVEWMSDWIRPLDPRPRAGQVAGDPEGMELWAVEVKAWKSLCSIAEE- 495

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
                                          N   +  ++ +   G+ V  +  +   + +
Sbjct: 496  ---------------WAAVFTKSRLGEEACNPATFAAVLEQAARGKKVVKRPARRGGIRL 540

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-----LKTAEKYIGQAA 685
            L     R   +  + + G  EG WP+   ++  +    +  L      L  AE+      
Sbjct: 541  LEPNRIRGDRYRAVFMLGCTEGKWPRFFREDWLIPDRERLRLRKEGLSLPLAEELREHQL 600

Query: 686  HDFE--MANGTRHLIYTRS-LRENNIPTIASRWLQRLLVLGGTDFFDNLKK--------- 733
              F    A  T  L+++ S         + S +LQ LL + G +     ++         
Sbjct: 601  LPFFLCAAAATEKLVFSYSSASAEGKGQLPSPYLQELLQVFGKEGVQRWERSIGDRFPLL 660

Query: 734  --------RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR----------------- 768
                    RG      TR  D        +        E                     
Sbjct: 661  WEDCTSLLRGAERAVATRAADGPKSDALAEAILHRLREEHPSWFDTLSARVRAEGKRRSE 720

Query: 769  -------------------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                                      +S S + +++   +  +A RIL         +  
Sbjct: 721  GFTVFDGMLPPSSLTASLGEKLRDGVWSASVLNEVVRCRFHFFAGRILGAQSRDVGDEPL 780

Query: 804  DRTDRGTLFHNIITELIKKRINKNT-----PEINHLMKQIIDSHFEK------ENLPPHI 852
               +RG L H I+     +   +             +  + +S F +      E   P +
Sbjct: 781  SPLERGNLMHRILCRFWDRYREQPPTSSAAESAREHLIAVTESVFSEFVREKGEIREPAL 840

Query: 853  DIIWRHLFHKISHSFLEHEEKIQ----SSIEKIFVNIPA--------------------- 887
              + R    ++  S L+H+   +      +   ++ +                       
Sbjct: 841  LGVERKRLERLLLSILDHDLAWRENVDGEVRPRYLELSFGLAKNPALVDRREMDPASREE 900

Query: 888  --KMAIESIGI-HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
              ++++ +     L G  DR+D  + G+  + DYK+G  P  +   +    QL L    L
Sbjct: 901  TAELSLGNGRFLRLRGKVDRVDQDEEGYYMVYDYKSGPAPGLKEVLQGSHLQLPLYLWVL 960

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK---------------------KKYSA 983
            +   F     + V   ++    +K K      ++                     ++ + 
Sbjct: 961  QET-FGMDPGKGVGAAYFTPGTRKGKSPGDHRNRGIWRKEEAGRAGISSRIKGVLEEDAW 1019

Query: 984  DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
            + + E+    L E +  L+ G+    +             +  + RV E
Sbjct: 1020 EGVLEEIRTGLAERLERLEQGDF---AVDPAGGICPDHCPHRTVCRVDE 1065


>gi|49485742|ref|YP_042963.1| hypothetical protein SAS0836 [Staphylococcus aureus subsp. aureus
            MSSA476]
 gi|81649661|sp|Q6GAW0|ADDB_STAAS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|49244185|emb|CAG42611.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            MSSA476]
          Length = 1158

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 113/967 (11%), Positives = 269/967 (27%), Gaps = 143/967 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L   + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAIS 373
            N  N    R           +  D+++ +   + +   +      + ++E+   REE   
Sbjct: 257  NELNISIERQYFNQLY--RFNNQDLKHLEQEFDVLQINRVACQGHINILESATMREEINE 314

Query: 374  IAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            IA  + + + +     +  A++  D + A      L  + I  +I     ++      ++
Sbjct: 315  IARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMI 374

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             SL+  I        +  L+K  +    +     +   + LE   L         +D + 
Sbjct: 375  RSLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDEL 432

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCG 546
              ++  +      H      R + E   +L   ++D IL     ++   T K    +   
Sbjct: 433  FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYE 492

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
            ++   +     +T    + L+          ++    L  +   ++        +   ++
Sbjct: 493  SMEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFL 551

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            ++    ++        +    + I     +++ N   + L G+N+G  P+    +  ++ 
Sbjct: 552  EVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVFLVGMNDGTMPQPVTASSLITD 611

Query: 667  VMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSL-RENNIPTIASRWL 716
              +             T++      A      M    + + ++  L   +      S +L
Sbjct: 612  EEKKYFEQQANVELSPTSDILQMDEAFVCYIAMTRARQDVTFSYRLMGSSGDDKEISPFL 671

Query: 717  QRLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRP 757
             ++  L       N+ +                     +    W              + 
Sbjct: 672  NQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQV 731

Query: 758  KPFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYAR 788
                                                 +    S S  +     P+  YA 
Sbjct: 732  IRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYAS 791

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
              LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+   
Sbjct: 792  HGLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILP 849

Query: 849  --------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK---------- 888
                                  I  + L   +     S           +          
Sbjct: 850  KVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELI 909

Query: 889  ----MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLS 938
                   + I I++ G  DRID   K+    V+I DYK+  G            +  Q+ 
Sbjct: 910  AQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMM 969

Query: 939  LEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKN 993
                 +    +    + I   K   L Y  + + + K    ++  +     +L +K    
Sbjct: 970  TYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFK-- 1025

Query: 994  LIEIVTL 1000
            L  +V  
Sbjct: 1026 LSGLVNA 1032


>gi|302332579|gb|ADL22772.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            JKD6159]
          Length = 1158

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 113/965 (11%), Positives = 271/965 (28%), Gaps = 141/965 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L + + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+ +   +      +                 I I G          ++  +  +  
Sbjct: 167  FEQRIQKEFIT--GEDALQYFIDCMPKSEWLKCADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            N  N    R     +S+   +          +    N   C   + ++E+   REE   I
Sbjct: 257  NELNISIERQ-YFKQSYRFNNQDLKHLEQEFDALQINRVACQGHINILESGTMREEINEI 315

Query: 375  AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            A  + + + +     +  A++  D + A      L  + I  +I     ++      ++ 
Sbjct: 316  ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            SL+  I        +  L+K  +    +     +   + LE   L         +D +  
Sbjct: 376  SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433

Query: 492  VLDRIATQKNNTHVPHWQSRLSEE----DKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
             ++  +      H      R + E     K+     + H  + ++   T K    +   +
Sbjct: 434  NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVFDKILHFEKQMSQAETVKDFATAFYES 493

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +   +     +T    + L+          ++    L  +   ++        +   +++
Sbjct: 494  MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +    ++        +    + I     +++ N   + L G+N+G  P+    +  ++  
Sbjct: 553  VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612

Query: 668  MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717
             +         +L+  +    + +A   +      + ++ ++ SL   +      S +L 
Sbjct: 613  EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLN 672

Query: 718  RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758
            ++  L       N+ +                     +    W              +  
Sbjct: 673  QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732

Query: 759  PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789
                                                +    S S  +     P+  YA  
Sbjct: 733  RDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848
             LKL+     K +    D G +FH+++  + ++      P     ++Q+ +   E+    
Sbjct: 793  GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKPLDLKKIRQLTNEALEEILPK 850

Query: 849  -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888
                                 I  + L   +     S           +           
Sbjct: 851  VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910

Query: 889  ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939
                  + I I++ G  DRID   K+    V+I DYK+  G            +  Q+  
Sbjct: 911  QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970

Query: 940  EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994
                +    +    + I   K   L Y  + + + K     +  +     +L +K    L
Sbjct: 971  YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026

Query: 995  IEIVT 999
              +V 
Sbjct: 1027 SGLVN 1031


>gi|239636507|ref|ZP_04677509.1| ATP-dependent nuclease subunit B [Staphylococcus warneri L37603]
 gi|239597862|gb|EEQ80357.1| ATP-dependent nuclease subunit B [Staphylococcus warneri L37603]
          Length = 1156

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 124/1021 (12%), Positives = 277/1021 (27%), Gaps = 151/1021 (14%)

Query: 56  AIQELRSEFIEITGKKSTIL--PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL-EL 112
            + E++ +          IL  P   +     E+ F  D  L+ +L   V + +RL   +
Sbjct: 18  MVNEIKDKMKRDPLGDPIILIAPTQSTFQ--FEQAFVNDEALNGSLRTEVLHFERLSHRV 75

Query: 113 ARLILIWRNKLPDIIKDLYP--------ESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            + +  +  +                  +  + L  S A     ++ LA+ I   +    
Sbjct: 76  FQEVGGFTEQRLSKAATEMMIYHLVQQYQDDMKLYRSQAKYFGFSEKLAEQIQDFKKYSV 135

Query: 165 KWEDLHALKNEKYGMWWLL-AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
             E +    N  +         + + +  K +  R+        V   +     + +   
Sbjct: 136 LPEHIDEFLNTHHVQTRTKHKLEDISLIYKQFESRM--HGQFITVEDSLRQFIKQMDQSE 193

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
              +  I I G          ++  +  H     VL   D +                  
Sbjct: 194 WLKRSEIYIDGFHNFSTLEYEMIQALVKHAKKVTVLLTTDGNQDAFSL-FRKPSEVLTHL 252

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +     H Q +     D    +  D+K L +  + +                       
Sbjct: 253 EDIAQDLHIQLNKNIFTDIYRFENNDLKSLESQFDALQI--------------------- 291

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSALITADRNLAR 400
                    QK    + + E+ + REE   IA  +     +N    +  A++  D + A 
Sbjct: 292 -------TPQKSEGFIDIFESSSMREEINEIARQILKDTRDNQLRFQDIAILYRDASYAD 344

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
             +  L  + I  +I     ++      ++ SL+  I       A+  L+K  +    F 
Sbjct: 345 LFESILPLYQIPFNIDTKRSMTHHPIMEMIRSLIEVIQSNWHINAMMRLLKTNVLTDQFK 404

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED-KEL 519
                   + LE  A+         +D +   ++         H    + R + E   +L
Sbjct: 405 NSTHL--IDLLENFAIERGIYGKKWLDDEIFNIENFRKMGRKEHQLTQEERDTFEQVVKL 462

Query: 520 AVLLVDHILQCITPL---VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
              ++D IL     +    T +    +   ++   +     +T    +  D +       
Sbjct: 463 KTDVIDKILHFEQAMNEGETVRDFATAFYESMEYFELPNHLMTERDMLDNDGY-HEQAEE 521

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            ++    L  +   ++        +   ++++    ++        +    + I     +
Sbjct: 522 IDQIWNGLIQILDDLVTVFETENMSLSRFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLA 581

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-------LKTAEKYIGQAAH--D 687
           ++ N   + L G+N+G  P+  + +  +S   +             T++      A    
Sbjct: 582 KVDNKKHIFLVGMNDGSMPQPISSSSLISDDEKKLFEENAQIELSPTSDILQMDEAFVCY 641

Query: 688 FEMANGTRHLIYTRSLRENNI-PTIASRWLQRL--------------LVLGGTDFFDNLK 732
             M+  T  + ++ SL   +      S +L ++              + L          
Sbjct: 642 IAMSRATSKVTFSYSLMGASGDEKEMSPFLAQIKDIYQDLNAINIHQMHLAQPMSLIEHV 701

Query: 733 KRG-----QCYLDWTRKLDYTTKQPHYKRPKPFPPL------------------------ 763
            +      +    W  +           +                               
Sbjct: 702 HQTKINLFESLRAWLDEEIVADTWIDAYQVMRDDEHLNKDLDYLITSLTYDNETTQLSET 761

Query: 764 -----EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                  +    S S  +     P+  YA   L+L+     K +    D G +FH+++  
Sbjct: 762 LAQDLYGKTINASVSRFEGYQQCPFKHYASHGLRLNER--TKYELQNFDLGDIFHSVLKY 819

Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEH 870
           +  +            +K +     E                          I  + L  
Sbjct: 820 ISDRINGDFKHLDQKKIKALTTEALETILPKVQFNLLNSSAYYRYLSRRIGAIVETTLNA 879

Query: 871 EEKIQS--SIEKIFVNIPAK--------------MAIESIGIHLTGFADRID-LLKSGF- 912
            +        +        +                 + + I++ G  DRID   K    
Sbjct: 880 LKYQGDYTKFKPQQFETGFRKKPKSDDELIAQSLTTKQGVPINIRGQIDRIDTYTKDNQS 939

Query: 913 -VDITDYK---TGDNPKKETAQKLIDPQLSLEAAALKAG----SFSQIDCRKVANLFYIR 964
            V+I DYK   +            +  Q+      +         + I   K   L Y  
Sbjct: 940 YVNIIDYKSSESSATLDLTKVYYGLQMQMMTYMDIVLQNQDRLGLTDI--VKPGGLLYFH 997

Query: 965 L 965
           +
Sbjct: 998 V 998


>gi|295394600|ref|ZP_06804819.1| superfamily I DNA and RNA helicase [Brevibacterium mcbrellneri ATCC
            49030]
 gi|294972493|gb|EFG48349.1| superfamily I DNA and RNA helicase [Brevibacterium mcbrellneri ATCC
            49030]
          Length = 1041

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 120/1058 (11%), Positives = 271/1058 (25%), Gaps = 163/1058 (15%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-VS 104
            SV +  P +     LR+E        +T     +S+         A    +  +    VS
Sbjct: 53   SVLVLTPNREHADVLRNELKSPVRSSAT----ARSVHSYAFGIVAAHTATTKGVPALFVS 108

Query: 105  NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
               + + LA  +  + +          P+   S+    A        L D I  I   + 
Sbjct: 109  GADQDVRLAEQLQGYFDSTVT-----GPQWTTSMTPELARTDVFRTQLRDSISEIMGHDF 163

Query: 165  KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV---------GYQIALM 215
             ++ +  L +      W     F+    +     L E    +                + 
Sbjct: 164  SYDRIVELAHTHNRPEWE-VLAFIGREYEELLTFLGEGAVDTSAVFTKAKHIVEESRVVP 222

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                +   +     I+         +    +  +     G            T  +   +
Sbjct: 223  GKAWDFAPEVLPAWILCDSVQDFPDSALGFLQALYQ--RGVCFALTCSPDSATQSFRGGS 280

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                                         +       L  +   + G   +         
Sbjct: 281  GDVFAG--------------------RHRLGVHTDIALDPLDPHIRGAGAITQTVDSLMR 320

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALIT 393
             S      +         +  S V   E  +    A  IA  +  R        + A++T
Sbjct: 321  DSADPVHALGYMAPRGSAEGSSQVFSCECSSGSNAARMIASMIYDRHQDGVPFAEIAVVT 380

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
               + A ++  EL   GI +  S                 + A+      + +  ++  P
Sbjct: 381  RRASSATQLSDELAASGIPVRTS-----------------VRALASDPATLPLLRILSLP 423

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                 +P    +    A       G  ++  +  L+  +      +     +  W     
Sbjct: 424  PESPEWPNAATACVTGAF------GGLDALTLRSLQRELTQLSGVEGPLETLMEWALETD 477

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
             E           +        +++  + +     + ++                H    
Sbjct: 478  TELPAAVERAKRMVKAAQE--SSHELAQYAVWAVWNAAEVADEWQENALRNPAGHHSSY- 534

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                 +    L +L  K+ E  +         + ++++    +++      +  + +   
Sbjct: 535  ----LDAVIRLLALAEKLNEGATSQVTGRDFAMKVMSQKFAQDSLAH-TALNDIVTVTTP 589

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM--- 690
                  +FDT+I+  L EGVWP  T +           + LK        ++ +F     
Sbjct: 590  AGVAHTHFDTVIVTDLQEGVWPNPTVRGTIFKTPQLMRV-LKDPATQEELSSENFSQHDF 648

Query: 691  ANGTRHLI----------YTRSL------RENNIPTIASRW--------LQRLLVLGGTD 726
                R  I           +R+         N    + S                +   D
Sbjct: 649  LARRRETIRDEGKLFVAALSRARTRVAVVAVNGHGELPSPLFTAVKGMPWTSQYWVDEPD 708

Query: 727  FFDNL--------------------KKRGQCYLDWTRKLD-------YTTKQPHYKRPKP 759
               +                     +   + +    + L                   + 
Sbjct: 709  ILPSTLSEIAGSARLQVNQALDSGDEDSAKPWAQLLKTLHSSGVSAADPNTWWLNPSSEL 768

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                  +P   S S+++     P   +  +            D      G L H I    
Sbjct: 769  PAMPSDEPVRISPSQVETYDQCPLKWFFNQN------SSQTVDTYPQAFGNLIHEIAQTY 822

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
             +        ++ +   +  +  F  E+                  + L    K +    
Sbjct: 823  PR----GGLADMLNHFDEKFEE-FTFESEWE--RQREYADGRATVEN-LNEYLKNRGDKT 874

Query: 880  KIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQ 936
             +   +  +  + +      ++G  DR++    G   I D+KTG+N P K + Q+  +PQ
Sbjct: 875  FVAAEVVVRSDLDVPLGPARVSGRIDRLEKTSDGAAYIVDFKTGNNLPSKPSVQE--NPQ 932

Query: 937  LSLEAAALKAG---------SFSQIDCRKVANLFY-IRLKQKFKIDCITNDKKKYSADEL 986
            L+    A++AG             I       L Y  +   + K      ++      ++
Sbjct: 933  LATYQVAIEAGQATFINDVELIRGITECAGGELVYPRKAAGQRKPPSNVREQGPIKDTDV 992

Query: 987  SEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
              K++  +  +V   +     F +    S+ +     +
Sbjct: 993  YTKTIATIESLVRSARTHT--FTA--TPSDDACRTCAF 1026


>gi|116334820|ref|YP_796347.1| ATP-dependent nuclease, subunit B [Lactobacillus brevis ATCC 367]
 gi|122268501|sp|Q03NA6|ADDB_LACBA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|116100167|gb|ABJ65316.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactobacillus brevis
            ATCC 367]
          Length = 1201

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 104/1002 (10%), Positives = 258/1002 (25%), Gaps = 159/1002 (15%)

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
            P +S     + + ++I    ++L     ++     +S   +      + +  A  +    
Sbjct: 92   PRISPAGLNMLIYQIIQTHADELTIFRGEVDRPGFVSQLATQLAEFKVGQVTAADLM--- 148

Query: 161  TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                    +  L               L I  + +  ++  +         +  +    E
Sbjct: 149  ------SAIEQLDTTN--TDLQAKLHDLMIIYEAFETQM--MGKFVENTDLLNQLATYLE 198

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +        + G +       +L++ +        V   LD   P             
Sbjct: 199  QQVDLQHAHFYLEGFSQLSAQERQLVAILIQRSASVTVALNLDHGYPQK----------- 247

Query: 281  ITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                     T   +  AKL   L  + + +   +         R      + L    +  
Sbjct: 248  -----LPDKTTLFFQSAKLYQQLYMVAQANRVPVLIDQQAKTARV----SADLQALDTYW 298

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADR 396
            + +  L  + P+  +  + + +++A N   E   +A  +R  +   +   +   ++T   
Sbjct: 299  QASQTLSPQ-PSAVEKPTHIQIVQAANRYVEVSRVATQIRQLVATGNYRYRDFLVLTRHL 357

Query: 397  NLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            +  + V         +     A I ++      +L +L +   +   +  +  ++K  L 
Sbjct: 358  DAYQTVIDPIFQAQAVPYFDDADIRMADHPFVELLNALFDVQRRNYRYADVFRVLKSELL 417

Query: 456  KFGFPEKYL------SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
                 +  L       +A    E   L+               +       +        
Sbjct: 418  LPRDADGELMAVPAYRQALALTENFVLKNGLEGQHWWTQDKDWVYNRFAVGDGGVQTTRD 477

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI---SDWTKLTVTCLQNVCL 566
             ++S +   +   +   +      L    T  ++          +  ++  +T       
Sbjct: 478  DQISAQINRIRRFVKQTLPPFFARLKVAATYTDAAAVLYQFVANAGVSERLMTWRDQAIA 537

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                       E+       +  +       +     ++  ++     G           
Sbjct: 538  AGDLTKAGQ-PEQTWAAFCDILDEFHTILGDLPTVLPDFQALLQAGFAGAKFSQIPSTLD 596

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---------NLKTA 677
             + I  +   +  N     + G      P N      L+   + DL              
Sbjct: 597  QVVISESGIVQANNRKITFIMGATADTMPDNQIPTTLLADNDRQDLSARLQQVDDGTYLR 656

Query: 678  EKYIGQAA-----HDFEMANGTRHLIYTRSL--RENNIPTIASRWLQRLLVLGG------ 724
            +    Q A     +     +G+  LI++      +       S ++ R+    G      
Sbjct: 657  DDAATQLAGEPYLNYLAFMSGSERLIFSYPAMSDDARSGLQLSPYVARIKDYFGLSIDIA 716

Query: 725  --------TDFFDNLKKRGQCYLDWTRK--------------------LDYTTK------ 750
                          +  R        +                     L  T        
Sbjct: 717  AANPVAEDEAILPFVGTRRTTLRHLVQASHDSQLREVPLSRSWLYVLNLLRTDPTYGELT 776

Query: 751  -----------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                        P    P     L       S S++++   +PYA + +  L L     F
Sbjct: 777  TKLLGSLSYRNVPTQLTPDIVTQLYGTKINTSISKLEEYYANPYAYFLKYGLNLQERDVF 836

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEIN---HLMKQIIDSHFEKENLPPH----- 851
                     G  FH  +  L+K   ++           ++++ D    K           
Sbjct: 837  --ALSPASTGEFFHATLDGLMKLVNDQKLNLAALDDQQLREMTDEVMAKLLDTTENPQFA 894

Query: 852  ----------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM---------AIE 892
                      I         +++ +    E+  ++ +      +   +         + +
Sbjct: 895  ILESSHRMGYIRQQLMKTMRQMAKTL--QEQSKRTKLRPKRTEVQFGLGDERGLAALSFD 952

Query: 893  SI---GIHLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALK 945
                  + + G  DR+D   +K      I DYK+ ++    + A      Q+     A+K
Sbjct: 953  VGKRRQVTVRGRIDRLDAVQVKDKTYLGIVDYKSSEHKFSYQEAYYGRAMQMLTYLDAVK 1012

Query: 946  AGSFSQIDC-----RKVANLFYIRLKQKFKIDCITNDKKKYS 982
                + +D       ++A   Y+ L+           +   +
Sbjct: 1013 QNLPTLLDAPTAKDAELAGAVYLHLQNPILKAAEVLGEDPLT 1054


>gi|30261248|ref|NP_843625.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Ames]
 gi|47526410|ref|YP_017759.1| ATP-dependent nuclease subunit B [Bacillus anthracis str. 'Ames
            Ancestor']
 gi|49184080|ref|YP_027332.1| ATP-dependent nuclease subunit B [Bacillus anthracis str. Sterne]
 gi|65318519|ref|ZP_00391478.1| COG3857: ATP-dependent nuclease, subunit B [Bacillus anthracis str.
            A2012]
 gi|165873105|ref|ZP_02217723.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0488]
 gi|167635422|ref|ZP_02393736.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0442]
 gi|167640181|ref|ZP_02398447.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0193]
 gi|170688092|ref|ZP_02879304.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0465]
 gi|170707684|ref|ZP_02898136.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0389]
 gi|177655490|ref|ZP_02936933.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0174]
 gi|190566641|ref|ZP_03019558.1| ATP-dependent nuclease, subunit B [Bacillus anthracis Tsiankovskii-I]
 gi|227816014|ref|YP_002816023.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. CDC 684]
 gi|229600115|ref|YP_002865671.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0248]
 gi|254682691|ref|ZP_05146552.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str.
            CNEVA-9066]
 gi|254725484|ref|ZP_05187266.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A1055]
 gi|254734109|ref|ZP_05191822.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Western
            North America USA6153]
 gi|254740247|ref|ZP_05197939.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Kruger B]
 gi|254753587|ref|ZP_05205623.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Vollum]
 gi|81583097|sp|Q81TW2|ADDB_BACAN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|30254862|gb|AAP25111.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Ames]
 gi|47501558|gb|AAT30234.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. 'Ames
            Ancestor']
 gi|49178007|gb|AAT53383.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Sterne]
 gi|164711159|gb|EDR16718.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0488]
 gi|167511782|gb|EDR87162.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0193]
 gi|167529250|gb|EDR92003.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0442]
 gi|170127459|gb|EDS96334.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0389]
 gi|170667987|gb|EDT18738.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0465]
 gi|172080089|gb|EDT65185.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0174]
 gi|190562193|gb|EDV16161.1| ATP-dependent nuclease, subunit B [Bacillus anthracis Tsiankovskii-I]
 gi|227004849|gb|ACP14592.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. CDC 684]
 gi|229264523|gb|ACQ46160.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0248]
          Length = 1171

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 108/977 (11%), Positives = 251/977 (25%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           + I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321

Query: 369  EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  + E     +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483
                 + S L  I     + A+   VK  L       K  +    +  E   L       
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 484  DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522
                    +  R                         ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +         L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEENGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPF------------LSRVMQSDLNLKTAEKYIGQ 683
              +L+ +   +           T +                +  +     L   E     
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 684  AA----------------------HDFEMA-----NGTRHLIYTRSLRENNIPTIASRWL 716
            A+                      +D           T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKDTFITNDVNDLSRLEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|319442810|ref|ZP_07991966.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile DSM
            44702]
          Length = 1151

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 137/1080 (12%), Positives = 289/1080 (26%), Gaps = 149/1080 (13%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
               +P     AP +     ++ AL+                  A V +  P+K A  +LR
Sbjct: 85   PRDRPYAVLGAPGTGKTSLLLDALVTYLGNGG---------DPAGVMVVTPSKEAATDLR 135

Query: 62   SEFIEIT----------------GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
                ++                 G  +T  P ++S+         A   L          
Sbjct: 136  GRLTDLLCDLAGDVDGTAAADATGYAATGTP-VRSVHSWAFALLRAVAQLREE------P 188

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            + RL+  A   L+ R+ L     D     P  +       +  A+ L D++   E     
Sbjct: 189  LPRLMTGADHDLLIRSLLQGNAVDGTGSWPERI-RPALPLVGFARQLRDLLLRAEERGIG 247

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ--IALMRAEAEHLM 223
             + L  L  E     W+ A DFL+ + +            S + ++    L        +
Sbjct: 248  PDALADLGREHDLDMWVGAGDFLRESRRVVKLSGSHALNVSELLHRVLDELENTPEGRRI 307

Query: 224  KGTKGP----IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +      +++  +    PA+AR +  +     GA VL   D       +    E   
Sbjct: 308  LDRQRDTVKLLLVDDAHNLDPASARFLEML--TTPGARVLVAGDSDQCVFHFRGADEDYL 365

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
               + +  +      S       +       + L      +  R+   +           
Sbjct: 366  TGLAEDADHRIVLSRSYRLGAAAVTAVNRLGRLLPPSRTRVPVRATEAA----------- 414

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396
                  E    ++     D+ +  A +   E +S+A A+R +   +     + A++    
Sbjct: 415  -TEAATEAGTEDVAGPAPDLVIRRAPSVTSERLSVADAVRRAHVTDGVDWDRIAVVVRTA 473

Query: 397  NLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
                 ++  L   G+ + +    + L+     S L   L+A+ +      +  LV+ P+ 
Sbjct: 474  GEIHPLRRTLLSHGVPVKVDPTSVVLAEQPLVSSLLLALDALVRPLTVAELQQLVESPVG 533

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                    L R + +L  V +     + + + L       +  + +      W+ R    
Sbjct: 534  G--ADPVMLRRMERSLAPVLVGTGLRAMEAVGL------MVTGRADEQETEAWRRRFGPR 585

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            +  L   +   I           + +         +  +    T          +   +L
Sbjct: 586  ELGLLDQVRAVIEAGQVVAEDGGSVEAVLWAVWQATGLSTRLQTRALRGGTLGSQADRDL 645

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT-RLIDGETVKPKIEKSSTLFILGTL 634
                    L+    +              ++D +  + +       +  +   + IL   
Sbjct: 646  DAVMSLFDLAGDLVERTPA-----ITLETFLDGVRAQELPTGARDRRGVRPDAVEILPAH 700

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------KYIGQAA 685
             +    ++ +I+ G+ E  WP          +    DL  +  E           + +  
Sbjct: 701  AAAGREWEVVIVSGVQEDSWPAGPTVGGLFGQQELVDLLDRGIEPTTIVSRASSALAEER 760

Query: 686  HDFEMA--NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
              F +A    +R+ + T      +  ++ SR+L  +         +N     +       
Sbjct: 761  RLFLLAVSRASRYTLVTAVESAGDEASVPSRFLDDITGGEEATAVENADPESEPRPHPVD 820

Query: 744  KLDYTTKQPHYKRPKPF--------PPLEAQPRTYSFSEIKQLI------NDPYAVY--- 786
             +  +  +     P           P      R  +   +  L        DP   +   
Sbjct: 821  TVADSLPRVLAMEPLVAELRDAVCDPDRPGHERRAAAENLATLAEAGVYGADPAEWWGTA 880

Query: 787  --------ARRILKLDFI----------------------------PHFKKDPDRTDRGT 810
                                                                 +    GT
Sbjct: 881  GPSSTGPAVAHRRGDSEPTLRISPTTLENLGRTTGPACDLASFLDSLRSTPTTEPMKVGT 940

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
            L H +          ++  +I   +   +       + P                     
Sbjct: 941  LIHALAEGFADGLTPEDAADIVREVVPWL------VDGPAWTARPLTEGCLDAVDRLHGW 994

Query: 871  EEKIQSSIEKIFVNIPAKMAIE----SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
              +   +   + V    +  I      + + L G  DR++    G   + D+KTG N K 
Sbjct: 995  LTQRAGNGRTVEVEKKLEHMIGHTDTGLPVILAGRTDRLETTADGASTVIDFKTGKNAKT 1054

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
                    PQLS     +             A L Y R++             +    E 
Sbjct: 1055 VKEAAG-SPQLSAYQLLVS---LEDGRRADGAMLVYPRVENAKVKVLQQGQLSEDDLAEF 1110


>gi|191638485|ref|YP_001987651.1| ATP-dependent exonuclease, subunit B (ATP-dependent exonuclease,
            subunit B) [Lactobacillus casei BL23]
 gi|251764591|sp|B3WEJ2|ADDB_LACCB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|190712787|emb|CAQ66793.1| ATP-dependent exonuclease, subunit B (ATP-dependent exonuclease,
            subunit B) [Lactobacillus casei BL23]
 gi|327382520|gb|AEA53996.1| Putative ATP-dependent nuclease subunit B [Lactobacillus casei LC2W]
 gi|327385717|gb|AEA57191.1| Putative ATP-dependent nuclease subunit B [Lactobacillus casei BD-II]
          Length = 1179

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 107/951 (11%), Positives = 235/951 (24%), Gaps = 129/951 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIASKY 194
            L++    A+       LAD +  + T     EDL+             A    L I   +
Sbjct: 114  LTIYAGEAHNTGFVTQLADQLSELVTGRITAEDLNTTVAALTPGDRHRAKLRDLGIILDH 173

Query: 195  WTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            +           P     +L+    +       +   I +        +   L+ T+   
Sbjct: 174  YEAE------IGPYATNASLLSGLQQVMRNQDLSHTFIYLNDFNVFSASETGLVETMIET 227

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                 V   L+   P A                     H  Y  AK +         + R
Sbjct: 228  AAEVTVSLVLNKPYPAAPPVAPNLFLPAGRLY------HRLYQKAKTMK----VPIRLDR 277

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                     G + +             + +  L+ + P       +V L  A +   E  
Sbjct: 278  FAKPRPLSEGMNHLAD---------WWQTSTNLQPQAPAQTAQNKEVELAVATDPYHELR 328

Query: 373  SIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
            ++A  +  ++ +  +      L       A  +      F I        P+       +
Sbjct: 329  TVARQIYQAVRQGARYRDFLILARRLDPYAAVIPAIFEEFNIPQFTDLERPMKDHPLVVL 388

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            + SL         +  +  L+   L             A +  +   +R           
Sbjct: 389  IESLFAIQDHDYQYQDVMRLLHTELLLPENMDIAAFRDALDTTDNHLVRTGITGKKRWTQ 448

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                         +      ++  + +   +  L+ D + Q +    T KT + +     
Sbjct: 449  TDPWRYFQRNPNADDSQLDPEADKTAQINAIKTLVADTVPQLLRQWQTAKTGREAAASLY 508

Query: 549  SISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                 T +       +     +     +   E+   T + L +           N  ++ 
Sbjct: 509  QWLQTTGVIDQLNVWRQTANADGDLSRSQANEQAWDTFTQLLNDYATILGEADFNRDQFR 568

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            +++       T         ++ I  T   RL     + + G      P     +  L+ 
Sbjct: 569  ELLAAGFASATYTQIPSTLDSVVISETGLVRLAKAKHVYVIGATNTAMPDVPNDSGVLNS 628

Query: 667  VMQSDLNLKTAEKYIGQAA-----------HDFEMANGTRHLIYTRSLR--ENNIPTIAS 713
              +  L  +  +                  +       +  L  +  ++  + N    AS
Sbjct: 629  EERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASEKLTLSYPMQNTQENSENQAS 688

Query: 714  RWLQRLLVL---------------------------------GGTDFFDNLKKRGQCYLD 740
             + ++L                                       +         + +  
Sbjct: 689  PYFRQLAQALQLTPATWAPAGLGTSLKAVLGSPRAMLSDFVRAAGEAQHQKLPLSRSWQG 748

Query: 741  WTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                L  T   P  ++               P     L  +    S S ++    + +  
Sbjct: 749  VLASLKQTKLAPLAQKLAGSLTYQNNPGRLDPTLAVQLYGRDMNVSVSRLETYYRNQFEY 808

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-----------TPEINHL 834
            + +  L L   P F+      D G+LFH ++ + + +  +                +  L
Sbjct: 809  FLKYGLLLQPRPEFE--LSPADTGSLFHAVLDQYLTQLRDAGQTLADVTAADVAAAVPPL 866

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA----- 887
            +  I      +     H          ++    L    +++ ++    +   +       
Sbjct: 867  VAAITKRPGYEILGSTHRMAYLTSRLSRLLIQVLTNMRQQQRRTGFRPMRTELQFGQIGD 926

Query: 888  -------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYK-TGDNPKKETAQKLIDP 935
                      +   G +++ G  DR+D+ +        + DYK T        A   I  
Sbjct: 927  TRGLPGLSWPLPHGGRVNVRGKIDRLDVYRESDAQRFMVVDYKSTQHRFDDSDAYYGIAL 986

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
            Q+     A+             A   Y  L+          D         
Sbjct: 987  QMLTYVEAMAN--VPADPPFVPAGALYFHLQDPKFKFSTDLDLDIDRLKAF 1035


>gi|229143846|ref|ZP_04272265.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST24]
 gi|228639607|gb|EEK96018.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST24]
          Length = 1171

 Score =  170 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 122/1070 (11%), Positives = 290/1070 (27%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 20   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 79   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 134  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 192  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 252  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392
                      E +        + V +  A N R E   +A  +R  + +     +  A++
Sbjct: 298  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 348

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 349  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSNHPLVECIRSALEIISGNWRYDAVFRCVK 408

Query: 452  HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----K 489
              L       K   R                     A +    R  ++  D   +    +
Sbjct: 409  TELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSE 468

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
              + ++I   ++    P  + +   +     + + + +   +  L         +     
Sbjct: 469  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 529  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 589  VLIANIDHSRLSDVRATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 649  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 709  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 762  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 822  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 880  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 940  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 1000 HTWMKKGGTASPAGVLYFHI-----HNPIVEVKGDASEAEIEKEILKKFK 1044


>gi|260583801|ref|ZP_05851549.1| exonuclease RexB [Granulicatella elegans ATCC 700633]
 gi|260158427|gb|EEW93495.1| exonuclease RexB [Granulicatella elegans ATCC 700633]
          Length = 1189

 Score =  170 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 105/948 (11%), Positives = 248/948 (26%), Gaps = 137/948 (14%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
               + L+ ++        + ED      +              I  K++ + L +     
Sbjct: 125  GFIERLSAVMQEFRLGGIEIEDFSGWFEQDSYEEIDQRLKEFGIIYKHYLDYLKQ----D 180

Query: 207  PVGYQIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
             V  +  L + A+   L   +   ++I  S         ++  +     G          
Sbjct: 181  FVQSEDLLKILAQEISLKDLSNTYVVIDQSYHLNAMELEVIDALVKSCGGVEFYTTATTD 240

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                                ++     +  +++LL++L I          V  E+   + 
Sbjct: 241  -----------AFKPKEKLESSLFDSNRQLVSRLLNWLMIDESKP-----VLKELNEENC 284

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS-IAIA--LRMSL 382
                 FL  +   +  +  LE       +   D+     ++ER+E    +A    L  S 
Sbjct: 285  AYHPDFLELEQYWLETSGGLETSSNRTSRKIEDLQWTTYEDERQEIQETLATIKTLVDSG 344

Query: 383  DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                +   +++ +    + +    L  + I   +     +       +L ++        
Sbjct: 345  KYRYQDIQILSRNLEEQQTLLQPLLETYQIPYFMDLSDTMEHHPLIQVLDAIFAIQKHFW 404

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
             +  I  L++     +          K+  E+       +    +D    ++     +  
Sbjct: 405  RYHNIMNLLRSEYCFWPLNRAN-LENKHDEEVTLRDALIHYRQKLDETETIILAQGYEGK 463

Query: 502  N---------------THVPHWQSRLSEEDKELAVLLVDHILQCITP----LVTYKTNKN 542
            +                     +  L  +    A  L + I+  + P    L   +T K 
Sbjct: 464  DWISRKTWNYQVENIDEDSLSSREVLVHQQLTQAQELREQIVSLLEPFYKKLDKVETTKE 523

Query: 543  STCGNLSISDWTKLTVTCL--QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
            +      + +   +T   L  +N   +          ++       L  + +        
Sbjct: 524  AITLLYQLLEKIGVTEAFLYWRNHAANIGDIQTARRQDQVWNEFLKLLEEYVYIFGDEPF 583

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            +   +  ++    +             L   G    R          GL++GV P+   +
Sbjct: 584  DWEIFQLLLHTGFEHTHYNMAPSTLDQLTCTGIDSVRYSPKKVTFAIGLSQGVLPRMEEE 643

Query: 661  NPFLSRVMQ----------SDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIP 709
            +  ++   +            L+  T +K   +    +++       L  +    +    
Sbjct: 644  SGLMTDEEREYLLSKLDSGRFLHPTTIQKQSVEPFLFYKVLTSATEKLYLSMHHTDKGAK 703

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQC-------------------------------- 737
              +S +++R+L        D  +K+ +                                 
Sbjct: 704  LKSSSFVERILNQYEITTQDGNQKQQERFEQGEFVTIHELFTTLLQKLRQYKFSKEEDIP 763

Query: 738  --YLDWTRKLDYTTK----------------QPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
              ++     L                            +    L       S S+++   
Sbjct: 764  SIWIALPHLLRQDKDFQQEYHTLVDSVFHLNIAKQLPKELAAELYGNHLYLSTSQVETFY 823

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN---HLMK 836
             DP++ + +  L +     F+        G  FH    + I+K                +
Sbjct: 824  KDPFSHFLQYGLNVRERREFE--LTAAGSGEYFHETFDQFIRKVHELKLDIRAIDAATTE 881

Query: 837  QIIDSHFEKENLPPHIDIIWRH--------LFHKISHSFL--EHEEKIQSSIEKIFVNIP 886
            +++   F+  N      I+           L        L     +  Q  +      + 
Sbjct: 882  KVLKEIFDSMNDDARFQILNATPRMNWTKVLLQDTIRQTLSAALLQLQQLQVTPWKTEVV 941

Query: 887  A------KMAIESIG---IHLTGFADRIDLLKSG---FVDITDYKTGDNP-KKETAQKLI 933
                   K+ I       + + G  DRIDLL++     + I DYK+          +  I
Sbjct: 942  FGAKSDKKIEIPLNDTQSLFIRGKIDRIDLLETEKGYHLGIVDYKSSAQKFDINRLRYGI 1001

Query: 934  DPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKK 980
              QL    +  +     Q           Y+ + Q             
Sbjct: 1002 QLQLLTYLSVARNIVSDQFKKTVTPYGGLYMHVFQPSFNAKDLKSDAD 1049


>gi|25010944|ref|NP_735339.1| exonuclease RexB [Streptococcus agalactiae NEM316]
 gi|81457035|sp|Q8E5U0|ADDB_STRA3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|23095323|emb|CAD46534.1| unknown [Streptococcus agalactiae NEM316]
          Length = 1077

 Score =  170 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 120/963 (12%), Positives = 261/963 (27%), Gaps = 138/963 (14%)

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            + +  L +             L D+   ++T      DL  L             + L  
Sbjct: 97   FEDGQLKVFGRLKQDASFISQLVDLYKELQTANLSILDLKYL-------HSPEKFEDLLA 149

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249
                 ++ L E    +         +  +  L    K  I I+ G T        L+ ++
Sbjct: 150  IFLVVSDLLREGEYDNQSKIAFFTEQVRSGQLDVDLKNTILIVDGFTRFSAEEEALIKSL 209

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
            ++     I+          A +      +     S          +  +      + + +
Sbjct: 210  SSRCQEIIIGAYASQKAYKANF------TNGNIYSAGVDFLRYLATTFQTKPEFILSKWE 263

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
             K    + ++        + S    D +                     + + E  N+++
Sbjct: 264  SKSGFEMISKNIEGKHDFTNSSHILDDT-----------------AKDCITIWECINQKD 306

Query: 370  EAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426
            E   +A A+R  L +  +     ++  D +  +        ++ I         ++    
Sbjct: 307  EVEHVARAIRQKLYQGYRYKDILVLLGDVDSYKLQLSKIFEQYDIPYYFGKAETMAAHPL 366

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
               + SL            +  L K     +    +     A  +   +       +  +
Sbjct: 367  VHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQDDLDYFEAYISYADIKGPKKFFTDFV 426

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
            +  K   L R+ T + +   P      +++               I  L  +        
Sbjct: 427  VGAKKFDLGRLNTIRQSLLAPLESFVKTKKQDG------------IKTLNQFMFFLTQVG 474

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
             + ++S          Q               +E  KT + +  +        K N  E+
Sbjct: 475  LSDNLSRLVGQMSENEQEK------------HQEVWKTFTDILEQFQTIFGQEKLNLDEF 522

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            + ++   +     +        + +         +   +   G+ +  +PK       +S
Sbjct: 523  LSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS 582

Query: 666  RVMQS-------DLNLKTAEKYIGQAAHDFEMAN---GTRH-LIYTRSLRENNIPTIASR 714
             + +                       + F   +     +  L+ T     N      S 
Sbjct: 583  DIERQLINDANDTDGHFDIMTRENLKKNHFAALSLFNAAKQALVLTIPQLLNESEDQMSP 642

Query: 715  WLQRLLVLGGT--------------------------------DFFDNLKKRGQC-YLDW 741
            +L  L  +G                                       + K  Q  +   
Sbjct: 643  YLIELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQTFWSVA 702

Query: 742  TRKLDYTTKQPHYKRP---------------KPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
             R L         + P                     E  P   S S +    N+ Y  +
Sbjct: 703  VRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDDPLKLSSSALTTFYNNQYKYF 762

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844
             + +L L+        PD    GT  H +   L+K +  ++  E  +        +  F+
Sbjct: 763  LQYVLGLEEQDSIH--PDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQEDVFK 820

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                          +   I+ +      +  S +         ++ I+   I + G  DR
Sbjct: 821  SLYSEDAESRYSLEILEDIARATATILRQD-SQMTVESEEERFELMID-NTIKINGIIDR 878

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEA-AALKAGSFSQIDCRKVANL 960
            ID L  G + + DYK+    +K   QK    + PQL     A  +     Q     +   
Sbjct: 879  IDRLSDGSLGVVDYKSSA--QKFDIQKFYNGLSPQLVTYIDAISRDKEVEQKPP--IFGA 934

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
             Y+ +      +   +  K  + D+L  K+ + L     L    E+ F+++ +   K ++
Sbjct: 935  MYLHM-----QEPKQDLSKIKNLDDLVTKNHQALT-YKGLFSEAEKEFLANGKYHLKDSL 988

Query: 1021 QSE 1023
             SE
Sbjct: 989  YSE 991


>gi|239631426|ref|ZP_04674457.1| ATP-dependent nuclease [Lactobacillus paracasei subsp. paracasei
            8700:2]
 gi|239525891|gb|EEQ64892.1| ATP-dependent nuclease [Lactobacillus paracasei subsp. paracasei
            8700:2]
          Length = 1179

 Score =  170 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 107/951 (11%), Positives = 232/951 (24%), Gaps = 129/951 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIASKY 194
            L++    A+       LAD +  + T     EDL+             A    L I   +
Sbjct: 114  LTIYAGEAHNTGFVTQLADQLSELVTGRITAEDLNTTVAALTPGDRHRAKLRDLGIILDH 173

Query: 195  WTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            +           P     +L+    +       +   I +        +   L+ T+   
Sbjct: 174  YEAE------IGPYATNASLLSGLQQVMRNQDLSHTFIYLNDFNVFSASETGLVETMIET 227

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                 V   LD   P A                     H  Y  AK +          K 
Sbjct: 228  AAEVTVSLVLDKPYPAAPPVAPNLFLPAGRLY------HRLYQKAKTMKVPIRLDRFAKP 281

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                    +                  + +  ++ + P       +V L  A +   E  
Sbjct: 282  RPLSEGMKH-------------LADWWQTSTNVQPQAPAQTAQNKEVELAVATDPYHELR 328

Query: 373  SIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
            ++A  +  ++ +  +      L       A  +      F I        P+       +
Sbjct: 329  TVARQIYQAVRQGARYRDFLILARRLDPYAAVIPAIFEEFNIPQFTDLERPMKDHPLVVL 388

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            + SL         +  +  L+   L             A +  +   +R           
Sbjct: 389  IESLFAIQDHDYQYQDVMRLLHTELLLPENMDIAAFRDALDTTDNHLVRTGITGKKRWTQ 448

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                         +      ++  + +   +  L+ D + Q +    T KT + +     
Sbjct: 449  TDPWRYFQRNPNADDSQLDPEADKTAQINAIKTLVADTVPQLLRQWQTAKTGREAAASLY 508

Query: 549  SISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                 T +       +     +     +   E+   T + L +           N  ++ 
Sbjct: 509  QWLQTTGVIDQLNVWRQTANADGDLSRSQANEQAWDTFTQLLNDYATILGEADFNRDQFR 568

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            + +       T         ++ I  T   RL     + + G      P     +  L+ 
Sbjct: 569  EQLAAGFASATYTQIPSTLDSVVISETGLVRLAKAKHVYVIGATNTAMPDVPNDSGVLNS 628

Query: 667  VMQSDLNLKTAEKYIGQAA-----------HDFEMANGTRHLIYTRSLR--ENNIPTIAS 713
              +  L  +  +                  +       +  L  +  ++  + N    AS
Sbjct: 629  EERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASEKLTLSYPMQNTQENSENQAS 688

Query: 714  RWLQRLLVL---------------------------------GGTDFFDNLKKRGQCYLD 740
             + ++L                                       +         + +  
Sbjct: 689  PYFRQLAQALQLTPATWAPAGLGTSLKAVLGSPRAMLSDFVRAAGEAQHQKLPLSRSWQG 748

Query: 741  WTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                L  TT  P  ++               P     L  +    S S ++    + +  
Sbjct: 749  VLASLKQTTLAPLAQKLAGSLTYQNDPGRLDPTLAVQLYGRDMNVSVSRLETYYRNQFEY 808

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-----------TPEINHL 834
            + +  L L   P F+      D G+LFH ++ + + +  +                +  L
Sbjct: 809  FLKYGLLLQPRPEFE--LSPADTGSLFHAVLDQYLTQLRDAGQTLADVTAADVAAAVPPL 866

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA----- 887
            +  I      +     H          ++    L    +++ ++    +   +       
Sbjct: 867  VAAITRRPGYEILGSTHRMAYLTSRLSRLLIQVLTNMRQQQRRTGFRPMRTELQFGRIGD 926

Query: 888  -------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYK-TGDNPKKETAQKLIDP 935
                      +   G +++ G  DR+D+ +        + DYK T        A   I  
Sbjct: 927  TRGLPGLSWPLPHGGRVNVRGKIDRLDVYRESDAQRFMVVDYKSTQHRFDDSDAYYGIAL 986

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
            Q+     A+             A   Y  L+          D         
Sbjct: 987  QMLTYVEAMAN--VPADPPFVPAGALYFHLQDPKFKFSTDLDLDIDRLKAF 1035


>gi|332669679|ref|YP_004452687.1| UvrD/REP helicase [Cellulomonas fimi ATCC 484]
 gi|332338717|gb|AEE45300.1| UvrD/REP helicase [Cellulomonas fimi ATCC 484]
          Length = 1077

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 125/1030 (12%), Positives = 251/1030 (24%), Gaps = 131/1030 (12%)

Query: 31   VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
            +E         L    V +    +RA  +LR          S   P++++   V      
Sbjct: 62   LETVVAAVDAGLSPQDVLVVSAGRRAAADLRDRLAARLRTTSGR-PLVQTAPAVAFSVLR 120

Query: 91   ADLLLSYNLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
            +   L  ++ P  V    + L LA L+          ++      P  +P          
Sbjct: 121  SRAALLGDVPPTLVGGADQDLLLAELLAGHAAGEGVPLR-----WPPHVPADVPTMRAFR 175

Query: 150  KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA---SS 206
              L D++           DL  L        W  AA   +        R    +      
Sbjct: 176  DELRDLLMRAAERGLTPADLADLGRRHERPEWETAARVYEEYLDVLVLRSATPDLGARLD 235

Query: 207  PVGYQIALMRAEAEHL------MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
            P        +A            +     +++     S  ATARL+  +    +GA +L 
Sbjct: 236  PAVVVEEAAQALVAWEDEVGDVPRPRWRLVVVDDHQESTSATARLLRVL--TADGARLLL 293

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              D       +   +                         D           LG V    
Sbjct: 294  LADPDTAVQTFRGASPALVGRAPVAG--------------DGDGELGAATLVLGTVWRHG 339

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
                 V ++      +          + +         V      +  +EA  +A  LR 
Sbjct: 340  PAVREVTARVTERIGSVGAVQHRRAASALRPDPAAPPQVQAAVLPSAAQEAAFVAHTLRT 399

Query: 381  SLDENK---KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNA 436
            +  E+     + A++         ++  L    + + +    +PL        L   +  
Sbjct: 400  AHLEHGVGWDRMAVVARSGGQVTALRRALAGASVPVTVVGSDVPLREEPAVRPLLEAVRV 459

Query: 437  IFK--LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            +      D  A A LV  PL           R     E +A  G + S  +         
Sbjct: 460  VVGDAPLDPAAAARLVCSPLGGLDAVGLRRVRRALRAEELAAGGGRTSDVL--------- 510

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
             +   ++   V    + ++     LA +L         P       +         S   
Sbjct: 511  LVEALEDVGRVASLPASVARPVARLAEVLAAGRRAAERP---GADAQTVLWSLWHASGLA 567

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            +          +   R   +L         +  F   +   +        + D +     
Sbjct: 568  EPWRRAALVGGVAGERADRDLDAVLALFRAAETFVDRMPRATAGA-----FADWLAAQDL 622

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                     +   + +L    +    +D +++ G+ +GVWP    ++  L      D+  
Sbjct: 623  PSDSLAAAARRLAVPVLTPAGAAGQEWDVVVVAGVQDGVWPDLRLRDSLLGSQALVDVVA 682

Query: 675  KTAEKY---------------IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL--- 716
              A                    +        +  RH +   ++ + +        L   
Sbjct: 683  DRAVDGTDPGARAAQARAAVLADELRSFAVACSRARHRLVVTAVADADQQPSPFLDLVEP 742

Query: 717  ----------------------QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                                    L            +          R           
Sbjct: 743  ADDETDHRRTTAPAAADLRGLVAELRGTLEHAVASGARPDPAVVRTLARLAREGVPGADP 802

Query: 755  KR--------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                             + +    S S ++                         D    
Sbjct: 803  AEWHGLADPTTDSPLWADDERVPVSPSRLETAQRCALRWALEAAGGT------AADSSGQ 856

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
              GTL H I  EL      +   E++    ++                    +  +++  
Sbjct: 857  TLGTLVHAIAQELPTGTRTELAAELDRRWSELG---LGDGWPARATRRRADAMIDRLAGY 913

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK-----SGF-VDITDYKT 920
                    Q +   + V     +  +     + G  DR++        +G  V + D KT
Sbjct: 914  L-------QGAGAPLLVEGGFTLRTDRA--VVRGTVDRVERDPAAPDDAGTPVRVVDLKT 964

Query: 921  GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC---RKVANLFYIRLKQKFKIDCITND 977
            G     +   + ++PQL     A+  G+F+++        A L Y+              
Sbjct: 965  GSTVPSKAKAE-VNPQLGAYQLAVDGGAFAELPADARSTGAVLVYVGAGSNATERPQPAL 1023

Query: 978  KKKYSADELS 987
              +      +
Sbjct: 1024 GGEDDGPSWA 1033


>gi|77413159|ref|ZP_00789358.1| reticulocyte binding protein [Streptococcus agalactiae 515]
 gi|77160777|gb|EAO71889.1| reticulocyte binding protein [Streptococcus agalactiae 515]
          Length = 1077

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 120/963 (12%), Positives = 261/963 (27%), Gaps = 138/963 (14%)

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            + +  L +             L D+   ++T      DL  L             + L  
Sbjct: 97   FEDGQLKVFGRLKQDASFISQLVDLYKELQTANLSILDLKYL-------HSPEKFEDLLA 149

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249
                 ++ L E    +         +  +  L    K  I I+ G T        L+ ++
Sbjct: 150  IFLVVSDLLREGEYDNQSKIAFFTEQVRSGQLDVDLKNTILIVDGFTRFSAEEEALIKSL 209

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
            ++     I+          A +      +     S          +  +      + + +
Sbjct: 210  SSRCQEIIIGAYASQKAYKANF------TNGNIYSAGVDFLRYLATTFQTKPEFILSKWE 263

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
             K    + ++        + S    D +                     + + E  N+++
Sbjct: 264  SKSGFEMISKNIEGKHDFTNSSHILDDT-----------------AKDCITIWECINQKD 306

Query: 370  EAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426
            E   +A A+R  L +  +     ++  D +  +        ++ I         ++    
Sbjct: 307  EVEHVARAIRQKLYQGYRYKDILVLLGDVDSYKLQLSKIFEQYDIPYYFGKAETMAAHPL 366

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
               + SL            +  L K     +    +     A  +   +       +  +
Sbjct: 367  VHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQDDLDYFEAYISYADIKGPKKFFTDFV 426

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
            +  K   L R+ T + +   P      +++               I  L  +        
Sbjct: 427  VGAKKFDLGRLNTIRQSLLAPLESFVKTKKQDG------------IKTLNQFMFFLTQVG 474

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
             + ++S          Q               +E  KT + +  +        K N  E+
Sbjct: 475  LSDNLSRLVGQMSENEQEK------------HQEVWKTFTDILEQFQTIFGQEKLNLDEF 522

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            + ++   +     +        + +         +   +   G+ +  +PK       +S
Sbjct: 523  LSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS 582

Query: 666  RVMQS-------DLNLKTAEKYIGQAAHDFEMAN---GTRH-LIYTRSLRENNIPTIASR 714
             + +                       + F   +     +  L+ T     N      S 
Sbjct: 583  DIERQLINDANDTDGHFDIMTRENLKKNHFAALSLFNAAKQALVLTIPQLLNESEDQMSP 642

Query: 715  WLQRLLVLGGT--------------------------------DFFDNLKKRGQC-YLDW 741
            +L  L  +G                                       + K  Q  +   
Sbjct: 643  YLIELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEKQTFWSVA 702

Query: 742  TRKLDYTTKQPHYKRP---------------KPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
             R L         + P                     E  P   S S +    N+ Y  +
Sbjct: 703  VRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDDPLKLSSSALTTFYNNQYKYF 762

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844
             + +L L+        PD    GT  H +   L+K +  ++  E  +        +  F+
Sbjct: 763  LQYVLGLEEQDSIH--PDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQEDVFK 820

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                          +   I+ +      +  S +         ++ I+   I + G  DR
Sbjct: 821  SLYSEDAESRYSLEILEDIARATATILRQD-SQMTVESEEERFELMID-NTIKINGIIDR 878

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEA-AALKAGSFSQIDCRKVANL 960
            ID L  G + + DYK+    +K   QK    + PQL     A  +     Q     +   
Sbjct: 879  IDRLSDGSLGVVDYKSSA--QKFDIQKFYNGLSPQLVTYIDAISRDKEVEQKPP--IFGA 934

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
             Y+ +      +   +  K  + D+L  K+ + L     L    E+ F+++ +   K ++
Sbjct: 935  MYLHM-----QEPKQDLSKIKNLDDLVTKNHQALT-YKGLFSEAEKEFLANGKYHLKDSL 988

Query: 1021 QSE 1023
             SE
Sbjct: 989  YSE 991


>gi|284048669|ref|YP_003399008.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731]
 gi|283952890|gb|ADB47693.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731]
          Length = 1116

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/1072 (12%), Positives = 274/1072 (25%), Gaps = 166/1072 (15%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
              F  E   A +   + +           LA++    P  R  + L +   +        
Sbjct: 133  RAFREETAQAFVQKEIQQQDG-------DLAALLDLYPADRLARILVALIDD-------- 177

Query: 75   LPIIKSL-GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI----LIWRNKLPDIIKD 129
            LP I +L G +      +              +  LLE   L         + L D  + 
Sbjct: 178  LPEILALPGGLAAPYEVSLGGEEAGKIEAEGALDALLESRDLAGPKSRAKLDALADQREA 237

Query: 130  LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL----KNEKYGMWWLLAA 185
            ++           + A+        I D+++  ++    L  L       +    W    
Sbjct: 238  IHQWIAAGEYSKASAALKPVSATGKIKDLVKEAKEALARLETLSLDGAGAEQARHWE--- 294

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIP 240
            + L    +   +        S        +    +        K     +++     +  
Sbjct: 295  NLLGRFRQALLDAAESREIYSFGYLSGRAVELLEKRPNVLFRYKSRFRYLMVDEFQDTNE 354

Query: 241  ATARLMSTVA----NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
               RL+  ++        G  +    D       +                 +      +
Sbjct: 355  EQKRLVYLLSGGSSRSLQGRNLFVVGDAKQSIYRFRGADVSVFRQVRDAIGETGGDNIVM 414

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
                       E    L +       RS V ++   P   S  +    +  K     +  
Sbjct: 415  DDNFRSAPEIIEACNTLFDDLLGTDSRSDVTAQPLHPHQPSSRKPVFAVLKKGECTLEEC 474

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINI 413
                       + E   +A A+R   ++        A++    +L+R+ +  LT  GI  
Sbjct: 475  Q----------QAEGRYVAQAIRQLREDTGLPYGQMAILLPAIHLSRQYEEALTALGIKS 524

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
             +S G             SLL  +       A+A  ++ P A     +            
Sbjct: 525  QVSDGKGFYERQEVVDWISLLTFLLNPRKDWALAGFLRSPYAGISDRQLTDLL------- 577

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                                                      +  L   L   + +    
Sbjct: 578  --------------------------------------KPWPELSLWESLRQSLEEPFVT 599

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            L       + T    S+ +           V      +          + L +L  K   
Sbjct: 600  LSRKLEALHRTALFQSLPELMDAFQEAF-AVEPTLLAQRGGREKLANFRKLRALGVKGAM 658

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                   + ++ ++++ RL   E+   +      + I+   +S+ L F  + L  L++  
Sbjct: 659  EDGDTARDFLDRLNLMRRLSARESAANQEADPEAVQIMTIHKSKGLEFPAVFLPDLSKKN 718

Query: 654  WP-----------------KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
                                +   N   + V       K   +   +    +        
Sbjct: 719  HNDTLGIQFLPGQGFGVRVPDAQGNLLETSVYTRLKGEKARLERAEKQRQLYVAMTRAEK 778

Query: 697  LIYTRSLRENNIPTIASRW--------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-- 746
             +Y  ++ E+   +             LQR+    G        ++         +    
Sbjct: 779  YLYLINVDESKEGSRPPDPDKEKWGQSLQRVFAPEGPHGDQMDWEKLDVAEILENQETGQ 838

Query: 747  ----YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
                           +  P    +    S S + +    P + Y      +  I      
Sbjct: 839  PGAGEAFVLDPAVYDRGRPVTVPRDLELSASALLEYDTCPRSFYYHYFRHMPGIDPETVG 898

Query: 803  -----PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS--HFEKENLPPHIDII 855
                     D GT  H ++  L ++   +   E   ++ +       F +E         
Sbjct: 899  EGSHRISAIDLGTYVHRVLELLQEEPEEEALAEALEVLDRTGAEKKVFAREG-------- 950

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA---IESIGIHLTGFADRIDLLKSGF 912
                  K+   +       +             +    +E       G  DR+  L  G 
Sbjct: 951  -----RKLVEQYCASPLYQELKDLPAQAERDFALPLFQLEQGRAVFQGSVDRLVTLPDGR 1005

Query: 913  VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + I DYKTG  P     ++    QL++ A A +         +KVA      L+     +
Sbjct: 1006 LGIVDYKTGHPPTDGEEKQGYTRQLTIYALAAE----ILYPGQKVAWARLHFLQDCSSWE 1061

Query: 973  CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
                +++        E+ LK L+E + +    EQ F +     ++      Y
Sbjct: 1062 LKDREQE--------EEKLKALVENLLIWDKEEQ-FPAR----KEGCQWCPY 1100


>gi|228906865|ref|ZP_04070734.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis IBL 200]
 gi|228852869|gb|EEM97654.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis IBL 200]
          Length = 1171

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 124/1069 (11%), Positives = 291/1069 (27%), Gaps = 175/1069 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL---------GDV---VEEKFTADLLLSYNLNPPV 103
            +E++ E  +    K+ +  +P   +          GDV   +  +  +   L++ +   V
Sbjct: 20   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSGDVRGSIRAQVFSFSRLAWKVLQEV 79

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                RL      + +   K+ +  KD      LS+    A      ++L  +I   +   
Sbjct: 80   GGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRYN 134

Query: 164  KKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMR 216
                +++ +    +                 L++    +   L+         Y   L+ 
Sbjct: 135  VTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERALIGRYL-DSEDYLQLLVE 193

Query: 217  AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
               +         I I G     P    ++  +        +   +D        N +  
Sbjct: 194  KLPQSEYVN-GAEIYIDGFHSFSPQELEIVRQLMICGAKVTITLTIDEKTLAQPVNELDL 252

Query: 277  KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
                  +              ++     I+ E    L         R    + + L    
Sbjct: 253  FYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAHY 298

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALIT 393
                     E +        + V +  A N R E   +A  +R  + +     +  A++ 
Sbjct: 299  ---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVLL 349

Query: 394  AD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
             +  +    ++   T + I   I    P+S       + S L  I     + A+   VK 
Sbjct: 350  RNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVKT 409

Query: 453  PLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----KS 490
             L       K   R                     A +    R  ++  D   +    + 
Sbjct: 410  ELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSER 469

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNST 544
             + ++I   ++    P  + +   +     + + + +   +  L         +     +
Sbjct: 470  EMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEES 529

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANAI 603
               L  +D  ++    +  +                   + S   + ++  +     + +
Sbjct: 530  GDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQV 589

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
               +I    +        I  +  +     ++  +L+ +   + G         T +   
Sbjct: 590  LIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTLL 649

Query: 664  LSRVMQSDLNLKTAE---------------------------------------KYIGQA 684
              + +   +  + +E                                            +
Sbjct: 650  EEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDLS 709

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
              +      T  +  +  +++           +R    G  DF+ ++        +W +K
Sbjct: 710  RSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQK 762

Query: 745  LDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                     Y+             L       S S ++      YA +A+  L L     
Sbjct: 763  SSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERDI 822

Query: 799  FKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKENL 848
            F    D  D G LFH  + ++                K    ++ L+ + I    +++ L
Sbjct: 823  F--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQIL 880

Query: 849  PPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--- 898
                   +      +I    S +  E    S    + + +P  M    ++  +   L   
Sbjct: 881  LSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNG 940

Query: 899  -----TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS- 948
                  G  DR+D    ++G  + I DYK +            +  Q+      + + + 
Sbjct: 941  VKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNAQ 1000

Query: 949  --FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 1001 TWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044


>gi|77407954|ref|ZP_00784704.1| exonuclease RexB [Streptococcus agalactiae COH1]
 gi|77173412|gb|EAO76531.1| exonuclease RexB [Streptococcus agalactiae COH1]
          Length = 1077

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 120/963 (12%), Positives = 261/963 (27%), Gaps = 138/963 (14%)

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            + +  L +             L D+   ++T      DL  L             + L  
Sbjct: 97   FEDGQLKVFGRLKQDASFISQLVDLYKELQTANLSILDLKYL-------HSPEKFEDLLA 149

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249
                 ++ L E    +         +  +  L    K  I I+ G T        L+ ++
Sbjct: 150  IFLVVSDLLREGEYDNQSKIAFFTEQVRSGQLDVDLKNTILIVDGFTRFSAEEEALIKSL 209

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
            ++     I+            +      +     S          +  +      + + +
Sbjct: 210  SSRCQEIIIGAYASQKAYKTNF------TNGNIYSAGVDFLRYLATTFQTKPEFILSKWE 263

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
             K    + ++        + S    D +                     + + E  N+++
Sbjct: 264  SKSGFEMISKNIEGKHDFTNSSHILDDT-----------------AKDCITIWECINQKD 306

Query: 370  EAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426
            E   +A A+R  L +  +     ++  D +  +        ++ I         ++    
Sbjct: 307  EVEHVARAIRQKLYQGYRYKDILVLLGDVDSYKLQLSKIFEQYDIPYYFGKAETMAAHPL 366

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
               + SL            +  L K     + G  +     A  +   +       +  +
Sbjct: 367  VHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEIGQDDLDYFEAYISYADIKGPKKFFTDFV 426

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
            +  K   L R+ T + +   P      +++               I  L  +        
Sbjct: 427  VGAKKFDLGRLNTIRQSLLTPLESFVKTKKQDG------------IKTLNQFMFFLTQVG 474

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
             + ++S          Q               +E  KT + +  +        K N  E+
Sbjct: 475  LSDNLSRLVGQMSENEQEK------------HQEVWKTFTDILEQFQTIFGQEKLNLDEF 522

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            + ++   +     +        + +         +   +   G+ +  +PK       +S
Sbjct: 523  LSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS 582

Query: 666  RVMQS-------DLNLKTAEKYIGQAAHDFEMAN---GTRH-LIYTRSLRENNIPTIASR 714
             + +                       + F   +     +  L+ T     N      S 
Sbjct: 583  DIERQLINDANDTDGHFDIMTRENLKKNHFAALSLFNAAKQALVLTIPQLLNESEDQMSP 642

Query: 715  WLQRLLVLGGT--------------------------------DFFDNLKKRGQC-YLDW 741
            +L  L  +G                                       + K  Q  +   
Sbjct: 643  YLVELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQTFWSVA 702

Query: 742  TRKLDYTTKQPHYKRP---------------KPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
             R L         + P                     E  P   S S +    N+ Y  +
Sbjct: 703  VRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDHPLKLSSSALTTFYNNQYKYF 762

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844
             + +L L+        PD    GT  H +   L+K +  ++  E  +        +  F+
Sbjct: 763  LQYVLGLEEQDSIH--PDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQEDVFK 820

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                          +   I+ +      +  S +         ++ I+   I + G  DR
Sbjct: 821  SLYSEDAESRYSLEILEDIARATATILRQD-SQMTVESEEERFELMID-NTIKINGIIDR 878

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEA-AALKAGSFSQIDCRKVANL 960
            ID L  G + + DYK+    +K   QK    + PQL     A  +     Q     +   
Sbjct: 879  IDRLSDGSLGVVDYKSSA--QKFDIQKFYNGLSPQLVTYIDAISRDKEVEQKPP--IFGA 934

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
             Y+ +      +   +  K  + D+L  K+ + L     L    E+ F+++ +   K ++
Sbjct: 935  MYLHM-----QEPRQDLSKIKNLDDLVTKNHQALT-YKGLFSEAEKEFLANGKYHLKDSL 988

Query: 1021 QSE 1023
             SE
Sbjct: 989  YSE 991


>gi|282600916|ref|ZP_05980119.2| putative ATP-dependent nuclease subunit B [Subdoligranulum
           variabile DSM 15176]
 gi|282570837|gb|EFB76372.1| putative ATP-dependent nuclease subunit B [Subdoligranulum
           variabile DSM 15176]
          Length = 1094

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 106/986 (10%), Positives = 257/986 (26%), Gaps = 134/986 (13%)

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
            S   + E         +      +    R L + R +    +++    +          
Sbjct: 46  YSFTSLAETLLRRYGGAAVQ---TLDEAGRALLVRRAVDSLLDQVVYYNRQ--------- 93

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                 +    +  A  I+ +++     + L A                L +    +   
Sbjct: 94  ----RRSAAFCEKAAQTIEELKSAGVTPQALAAYACAPGAD--RDKLQELSLIYGAYEGL 147

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
           L +  A  P   Q    +             + I            L++ +      A V
Sbjct: 148 LAQT-AMDPGDRQQLAAQYLDAAFFA--GRAVFIDEFDTFNAPKRALLAAML---PVADV 201

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
              L C  P      +   S     + +         L ++     +         +  +
Sbjct: 202 TVCLCCDGPEDHEGGMGLFSGAKAVAGS---------LRRMAADAGVPVHTETLTDDPRH 252

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                   ++     P  +  R  D  +  I                 E        +  
Sbjct: 253 ADTPVLAELNLLLADPTYTPDRTVDPDQPAIVCYGAASRQAEAKAVAAEIAARARAGM-- 310

Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                   + + +          ++ E     I +          T  +  + ++L+   
Sbjct: 311 -----PYHRMAVICRDAAQYLGPLRYEFRLQNIPLFCDEATTPENTAPARAVHAVLDLAR 365

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                  +  L+K  L      ++                   ++ +           + 
Sbjct: 366 SGVSSRTVLRLLKTGLVNLPERQQTALENYA-----------YTWSLKAADWRAPFTRSA 414

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW-TKLT 557
                       R  EE +   V L++ I + +  +        +    L +     + T
Sbjct: 415 AGYADVERAEDVRTREEAEAARVFLMERIQKFLPRVKNAGAAALTKQVYLFLQSLGAEDT 474

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
           +  L      + R         E   +  L +++ +     +    ++ ++ T L+    
Sbjct: 475 LNALAETLRGQGRMPEADEVLREWNVVMGLLNQLAQLLGEEELPPADYAELFTLLLRTTD 534

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS-----RVMQSDL 672
           +    +   ++ +      RL   D + + GL EG +PK       L+      +++   
Sbjct: 535 MGHIPQSLDSVILTTAGRMRLPETDAVFVVGLLEGEFPKTPGDQGLLTHADRDAMIRQGA 594

Query: 673 NLKT-AEKYIGQAAHDFEMANGTRH--LIYTRSLRENNI-------PTIASRWLQRLLVL 722
            L    E  + +    F  A       L  +     +              R L ++   
Sbjct: 595 ELPDCFENKVLREGVCFYKAMTAARSFLWLSWPGAAHAEDDTPASSALAPVRRLLQVPFA 654

Query: 723 GGTDFF---------------DNLKKRGQCYLDWTRKLDYTTKQPHYKR----------- 756
           G +                       R          L+     P               
Sbjct: 655 GPSTAELGASPAAALDILGVISQQPGREGEGEALRAALEDAEGTPQSAPGYEAVRRAREK 714

Query: 757 PKPFPPLEAQPRTY-------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
            +P                  S +  ++    P+  + + +L+       K +      G
Sbjct: 715 AEPAVRDTGALEKLLGPGLRVSPTRFEKYQTCPFGYFMQFVLRAAPRQ--KAELAPNISG 772

Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP--PHIDIIWRHLFHKISHS- 866
           TL H ++   ++++           ++ +++    +      P I +  ++L  +I  + 
Sbjct: 773 TLTHWVLENALRRQGAAFKDLTAEELQALVEELVAEYTQANLPGITVRMQYLIERIRRNL 832

Query: 867 -----FLEHEEKIQSSIEKIFVNIPAK--------------MAI---ESIGIHLTGFADR 904
                F++ + + QS  + +   +                 + +       + + G  DR
Sbjct: 833 VGLLGFIQRDLQ-QSGFQPVAFELRIDDRPGEDPEAPRIDPVELKDGAGHTVRIVGTVDR 891

Query: 905 IDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
           +D +  G    + + DYKTG    + +     +D Q+ L    L+  + ++      A +
Sbjct: 892 VDAMPLGERTYLRVVDYKTGGKDFQLKEVYCGLDCQMLLYLFTLERNAGNKFPGATAAGV 951

Query: 961 FYIRLKQKFKIDCITNDKKKYSADEL 986
            Y  L      + I   +    A E 
Sbjct: 952 EY--LLADPAPESIPRSEAGQDAAEA 975


>gi|229078428|ref|ZP_04210989.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock4-2]
 gi|228704850|gb|EEL57275.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock4-2]
          Length = 1166

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 120/1070 (11%), Positives = 282/1070 (26%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 15   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 74   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 129  NVTPSNVYEMWKQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 187  VEKLPQSEYVNGAEIYIDGFHSLSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 247  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 292

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392
                      E +        + V +  A N R E   +A  +R  +       +  A++
Sbjct: 293  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 343

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 344  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403

Query: 452  HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497
              L       K  +    +  E   L               +  R               
Sbjct: 404  TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 463

Query: 498  --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
                      ++    P  + +   +     + + + +   +  L         +     
Sbjct: 464  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 524  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 584  VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 644  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 704  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 757  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 817  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 875  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 935  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 995  QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039


>gi|206968209|ref|ZP_03229165.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1134]
 gi|206737129|gb|EDZ54276.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1134]
          Length = 1171

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 123/1070 (11%), Positives = 285/1070 (26%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 20   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 79   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L+         Y   L+
Sbjct: 134  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERALIGKYL-DSEDYLQLLV 192

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                +         I I G     P    ++  +        +   +D        N + 
Sbjct: 193  EKLPQSEYVN-GAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 252  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392
                      E +        + V +  A N R E   +A  +R  + E     +  A++
Sbjct: 298  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVAEENYRYRDIAVL 348

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 349  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408

Query: 452  HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497
              L       K  +    +  E   L               +  R               
Sbjct: 409  TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 468

Query: 498  --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
                      ++    P  + +   +     + + + +   +  L         + +   
Sbjct: 469  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIHAEE 528

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 529  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 589  VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 649  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 709  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 762  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821

Query: 798  HFKKDPDRTDRGTLFHNII----TELIKKRINKNTPEINH------LMKQIIDSHFEKEN 847
             F    D  D G LFH  +     +L+++        I        L+ + I    +++ 
Sbjct: 822  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECKHLSVLVIEEIAPLLQRQI 879

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 880  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 940  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 1000 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044


>gi|229095724|ref|ZP_04226703.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-29]
 gi|228687557|gb|EEL41456.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-29]
          Length = 1166

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 121/1070 (11%), Positives = 292/1070 (27%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++    +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 15   REVQEALKQRPRGKTILYLVPEQMTFQTQQALIESEDVRGSIRAQVFSFS-RLAWKVLQE 73

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 74   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 129  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 187  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 247  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLETH 292

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392
                 N    +          + V +  A N R E   +A  +R  + +     +  A++
Sbjct: 293  YEARPNEKYYDE---------ASVTISTAANLRAEVEGVAREIRRLVADETYRYRDIAVL 343

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 344  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403

Query: 452  HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIM----DLK 489
              L       K + R                     + +    R  ++  D      D++
Sbjct: 404  TELLYPLDVRKEMMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDIE 463

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
              + ++I   ++    P  + +   +     + + + +   +  L         +     
Sbjct: 464  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 524  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 584  VLVANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 644  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 704  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756

Query: 744  KLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 757  KSSRVLSSLFYRNRAQKLSTVVSRDLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNT----------PEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  +  +  + + +N             ++ L+ + I    +++ 
Sbjct: 817  IF--KLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 875  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      +   +
Sbjct: 935  GVKMEVIGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTTNA 994

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 995  QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039


>gi|228951605|ref|ZP_04113709.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            kurstaki str. T03a001]
 gi|228808066|gb|EEM54581.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            kurstaki str. T03a001]
          Length = 1166

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 121/1070 (11%), Positives = 283/1070 (26%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 15   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 74   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 129  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 187  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 247  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 292

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392
                      E +        + V +  A N R E   +A  +R  + E     +  A++
Sbjct: 293  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVAEENYRYRDIAVL 343

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 344  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403

Query: 452  HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497
              L       K  +    +  E   L               +  R               
Sbjct: 404  TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 463

Query: 498  --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
                      ++    P  + +   +     + + + +   +  L         +     
Sbjct: 464  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 524  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 584  VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 644  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 704  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 757  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 817  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 875  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 935  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 995  QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039


>gi|218896176|ref|YP_002444587.1| ATP-dependent nuclease, subunit B [Bacillus cereus G9842]
 gi|251764580|sp|B7IL83|ADDB_BACC2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|218542167|gb|ACK94561.1| ATP-dependent nuclease, subunit B [Bacillus cereus G9842]
          Length = 1171

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 124/1070 (11%), Positives = 285/1070 (26%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 20   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 79   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 134  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 192  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 252  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392
                      E +        + V +  A N R E   +A  +R  +       +  A++
Sbjct: 298  Y---------EARPNEKFNGQASVTISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 348

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 349  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408

Query: 452  HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
              L       K  +    +  E   L               +  R  +  +   +     
Sbjct: 409  TELLYPLDVRKETMREEMDKFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 468

Query: 511  RLSEEDKELAVLLVD----HILQCITP-----------------------LVTYKTNKNS 543
            R  EE       +V      + + +                         L   +     
Sbjct: 469  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEVVYLFLEELDVPKKLEELRIRAEE 528

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 529  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 589  VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648

Query: 663  FLSRVMQSDLNLKTAEKYI---------------------------------------GQ 683
               + +   +  + +E+                                           
Sbjct: 649  LEEQFVMYQMVTRASERLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 709  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 762  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821

Query: 798  HFKKDPDRTDRGTLFHNII----TELIKKRINKNTPEINH------LMKQIIDSHFEKEN 847
             F    D  D G LFH  +     +L+++    +   I        L+ + I    +++ 
Sbjct: 822  IF--KLDAPDIGELFHAALKKIADKLLRENRTWSDLSIKECEHLSVLVIEEIAPLLQRQI 879

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 880  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 940  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 1000 QMWMKKGQAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044


>gi|253732676|ref|ZP_04866841.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus TCH130]
 gi|253729287|gb|EES98016.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus TCH130]
          Length = 1158

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 113/967 (11%), Positives = 272/967 (28%), Gaps = 143/967 (14%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
            L L  S A     ++ L + I   +      E L   + ++          + + +  + 
Sbjct: 107  LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKIEDIALIYRE 166

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            + +R+   N        +              +  I I G          ++  +  +  
Sbjct: 167  FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               ++   D                           H Q+S   L          ++ + 
Sbjct: 225  SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAIS 373
            N  N    R           +  D+++ +   + +   +      + ++E+   REE   
Sbjct: 257  NELNISIERQYFKQLY--RFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINE 314

Query: 374  IAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            IA  + + + +     +  A++  D + A      L  + I  +I     ++      ++
Sbjct: 315  IARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMI 374

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             SL+  I        +  L+K  +    +     +   + LE   L         +D + 
Sbjct: 375  RSLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDEL 432

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCG 546
              ++  +      H      R + E   +L   ++D IL     ++   T K    +   
Sbjct: 433  FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYE 492

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
            ++   +     +T    + L+          ++    L  +   ++        +   ++
Sbjct: 493  SMEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDETMSMERFL 551

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            ++    ++        +    + I     +++ N   + L G+N+G  P+    +  ++ 
Sbjct: 552  EVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITD 611

Query: 667  VMQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWL 716
              +         +L+  +    + +A   +      +  + ++ SL   +      S +L
Sbjct: 612  EEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFL 671

Query: 717  QRLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRP 757
             ++  L       N+ +                     +    W              + 
Sbjct: 672  NQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQV 731

Query: 758  KPFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYAR 788
                                                 +    S S  +     P+  YA 
Sbjct: 732  IRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYAS 791

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
              LKL+     K +    D G +FH+++  + ++            ++Q+ +   E+   
Sbjct: 792  HGLKLNER--TKYELQNFDLGDIFHSVLKYISERVNGDFKQLDLKKIRQLTNEALEEILP 849

Query: 849  --------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK---------- 888
                                  I  + L   +     S           +          
Sbjct: 850  KVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELI 909

Query: 889  ----MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLS 938
                   + I I++ G  DRID   K+    V+I DYK+  G            +  Q+ 
Sbjct: 910  AQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMM 969

Query: 939  LEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKN 993
                 +    +    + I   K   L Y  + + + K     +  +     +L +K    
Sbjct: 970  TYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK-- 1025

Query: 994  LIEIVTL 1000
            L  +V  
Sbjct: 1026 LSGLVNA 1032


>gi|228944849|ref|ZP_04107212.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
 gi|228814877|gb|EEM61135.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
          Length = 1171

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 111/1052 (10%), Positives = 278/1052 (26%), Gaps = 172/1052 (16%)

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
            +   I+    + +I   + S   +  +        S      +      + L +++   +
Sbjct: 48   QQALIDSEDVRGSIRAQVFSFSRLAWKVLQEVGGASRLH---IDEAGVHMLLRKIVESRK 104

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKY 177
            + L             S+    A      ++L  +I   +       +++ +    +   
Sbjct: 105  DGL-------------SVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHS 151

Query: 178  GMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
                          L++    +   L  +         + L+  +           + I 
Sbjct: 152  SSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYID 209

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
            G     P    ++  +        +   +D        N +        +          
Sbjct: 210  GFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI------ 263

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                ++     I+ E    L         R    + + L        N            
Sbjct: 264  ---KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE------ 309

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRF 409
               + V +  A N R E   +A  +R  + E     +  A++  +  +    ++   T +
Sbjct: 310  ---ASVTIHTAANLRAEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDY 366

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR--- 466
             I   I    P+S       + S L  I     + A+   VK  L       K   R   
Sbjct: 367  NIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEM 426

Query: 467  ---------------AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPH 507
                              + +    R  ++  D   +    +  + ++I   ++    P 
Sbjct: 427  DEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPV 486

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCL 561
             + +   +     + + + +   +  L         +     +   L  +D  ++    +
Sbjct: 487  IRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVM 546

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKP 620
              + +                 + S   + ++  +     + +   +I    +       
Sbjct: 547  SLLDMFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATF 606

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-- 678
             I  +  +     ++  +L+ +   +           T +     + +   +  +  E  
Sbjct: 607  VIGVNEGVIPAAPMDEGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKL 666

Query: 679  -------------------------------------KYIGQAAHDFEMANGTRHLIYTR 701
                                                      +  +      T  +  + 
Sbjct: 667  YISCPLADEEGKTLLASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSY 726

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF- 760
             +++           +R    G  DF+ ++        +W +K         Y+      
Sbjct: 727  VMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKL 779

Query: 761  -----PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                   L       S S ++      YA +A+  L L     F    D  D G LFH  
Sbjct: 780  STAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAA 837

Query: 816  ITELIKKRINKNT----------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS 864
            +  +  + + +N             ++ ++ + I    +++ L       +      +I 
Sbjct: 838  LKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQII 897

Query: 865  --HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LL 908
               S +  E    S    + + +P  M    ++  +   L         G  DR+D    
Sbjct: 898  FRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAED 957

Query: 909  KSGF-VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYI 963
            ++G  + I DYK+             +  Q+      + + +     +      A + Y 
Sbjct: 958  ENGTFLRIIDYKSSSKSLDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYF 1017

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
             +      + I   K   S  E+ ++ LK   
Sbjct: 1018 HI-----HNPIVEVKGDASEAEIEKEILKKFK 1044


>gi|218902337|ref|YP_002450171.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH820]
 gi|251764579|sp|B7JDU3|ADDB_BACC0 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|218538203|gb|ACK90601.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH820]
          Length = 1171

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 107/977 (10%), Positives = 251/977 (25%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           + I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321

Query: 369  EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  + E     +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483
                 + S L  I     + A+   VK  L       K  +    +  E   L       
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 484  DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522
                    +  R                         ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETG-----------------------------------SCIKAN 601
                   + S   + ++                                          +
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTL----FILGTLESRLLNFDTLILGGLNEGVWPKN 657
                 D    ++    ++       TL    F++  + +R      +     +E      
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 658  TAK-NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
             +     + R+    ++          +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVIDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|307243598|ref|ZP_07525743.1| putative ATP-dependent nuclease subunit B [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493039|gb|EFM65047.1| putative ATP-dependent nuclease subunit B [Peptostreptococcus
           stomatis DSM 17678]
          Length = 1138

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 111/910 (12%), Positives = 266/910 (29%), Gaps = 104/910 (11%)

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           P ++  L   + D +  ++  +   E+L  +             + + +    + + + E
Sbjct: 114 PQDSTGLVDIVKDALIELKQNKIGLEELEEMALRTDDHALKAKLEDIGLIYSSYEKLMEE 173

Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
               +    Q  L+  +     +  +  I I   TG  P    L+  +        +   
Sbjct: 174 DYIDTEDWIQ--LLSKKLAFYEEIREATIFIDEFTGFTPVQYDLIEDLIALSKNTYISLL 231

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
           LD      +    ++            + H    L +L D   + +         S ++ 
Sbjct: 232 LDLKSRLEVKTVFSKTHVTYLKLIEICNRH---KLKRLEDIEVVSQGYY-----SSPDLA 283

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
                I+     P   ++                  ++ LIE +N  +E   +A  +   
Sbjct: 284 YLEKNINLYRAKPFQGEV-----------------ENIDLIEFENIYKEVEYVAGKIVEL 326

Query: 382 LDENK---KKSALITADRNLARR-VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
           +++     ++  + T D +     V+     + +N  +   +   T     +LTS+LN  
Sbjct: 327 VNDKGYRYREITVATRDLDSYAYLVRAIFRDYKLNYFLDQKLEAKTNPILVLLTSILNMK 386

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
            +   + ++   +K  L      +  L      +    +RG++   D    + L+ +   
Sbjct: 387 KENYSYNSVFNYLKSGLVGIDHEDVSLLENY--VIANGIRGSEWFKDWD--RPLIHNIED 442

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
             + +    +   +   E  E     +                         I+D  +  
Sbjct: 443 DSEPDNTHINDIRKRVVEPIEKLHDQLKGKNSLRDISAHLYQFALDIGLPERINDLIEEF 502

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                     +        + +       +  +++E     K     +I ++   + G  
Sbjct: 503 K--------GQENHYKAKEYSQVWNIFVDVLDEMVEFLGDEKIGLERYIRLMEAELSGFE 554

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL--- 674
           +      +  +F+      +  +   LIL G+NEGV+PK       +S   +  L     
Sbjct: 555 LGIIPPSNDQVFVTSVDRMKNPDTKVLILMGVNEGVFPKTIGDQTLISDREKEKLGQMGI 614

Query: 675 --------KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGT 725
                   KT ++          M    + LI T  +      T+  S  +++++ +   
Sbjct: 615 SFDSDVKSKTYDEVFLIYR---AMGIARKRLIITHPVSNFKGDTMKMSSLIKKIMKIFPG 671

Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---------------Y 770
              +N             +L    ++                 +               +
Sbjct: 672 LKMENFLDSDLDTSHIYDQLVSLEEKKKVDNMIESSLNYDNRVSNLNVDQARILYGKGVF 731

Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
           S S++++    P++ +    L          +    D G   H I+ E  K     +   
Sbjct: 732 SVSKLEKYAACPFSYFMNYGLAAKER--PINEFSPMDSGIYSHKILDEFSKSLAKIDLSW 789

Query: 831 -----------INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SS 877
                      ++ + + ++ S                   ++     +++  K      
Sbjct: 790 KDIDKGYIGMSVDQISQDLVKSRTGYILDSSEKYRYLYSRLNRSLVDSIDNMSKQVKKGD 849

Query: 878 IEKIFVNIPAK---------MAIES-IGIHLTGFADRIDLLKSGF---VDITDYK-TGDN 923
            +     +            + ++    +++ G  DR+D    G    V + DYK +G  
Sbjct: 850 FQPSGFELSFGFNSAYPPLNLDLDGSRKVNIIGKIDRLDTCIDGEREFVRVIDYKSSGKE 909

Query: 924 PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
               +    +  QL +   A+      +    + A + Y     K        D    S 
Sbjct: 910 IDLTSLYGGLQLQLFMYMNAVINA--DKTGKMEPAGVLYSNFSNKDLDMSGLADGLALSE 967

Query: 984 DELSEKSLKN 993
           ++L +K LK 
Sbjct: 968 EDLDKKLLKE 977


>gi|229177655|ref|ZP_04305032.1| ATP-dependent nuclease, subunit B [Bacillus cereus 172560W]
 gi|228605845|gb|EEK63289.1| ATP-dependent nuclease, subunit B [Bacillus cereus 172560W]
          Length = 1166

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 121/1070 (11%), Positives = 283/1070 (26%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 15   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 74   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 129  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 187  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 247  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 292

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392
                      E +        + V +  A N R E   +A  +R  + E     +  A++
Sbjct: 293  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVAEENYRYRDIAVL 343

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 344  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403

Query: 452  HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497
              L       K  +    +  E   L               +  R               
Sbjct: 404  TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 463

Query: 498  --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
                      ++    P  + +   +     + + + +   +  L         +     
Sbjct: 464  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 524  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 584  VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 644  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 704  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 757  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 817  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 875  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934

Query: 899  ------TGFADRID--LLKSGF-VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK+             +  Q+      + + +
Sbjct: 935  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKGLDLTEVYYGLALQMLTYLDVVTSNA 994

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 995  QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039


>gi|296876207|ref|ZP_06900261.1| ATP-dependent nuclease subunit B [Streptococcus parasanguinis ATCC
            15912]
 gi|296432918|gb|EFH18711.1| ATP-dependent nuclease subunit B [Streptococcus parasanguinis ATCC
            15912]
          Length = 1088

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 123/982 (12%), Positives = 283/982 (28%), Gaps = 147/982 (14%)

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            + ++ E   L  I    L         E  L +  +        + L  +   ++T +  
Sbjct: 72   LNQVFEEQPLDDIGLGMLFFKALSQMKEQDLKVYGALRKDPQFIQQLVQLYHELQTAQMD 131

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            + DL  L+  +           L    +  +E LV+    S       L + E  HL + 
Sbjct: 132  FTDLELLEEAEKRED-------LLAIFEAVSEMLVQHRYESQSKIAFFLNQVEVGHLEEQ 184

Query: 226  TKG-PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
             K   I++ G T        L+S +     G  ++ G+  +     +     +     +S
Sbjct: 185  LKDVAIVVDGFTRFSAEEEALISLLHR--KGVEIVIGV--YASEKAYRASFREGNLYQAS 240

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                       L +L    +++ +   +    S     R +     F   +         
Sbjct: 241  VDF--------LLQLAKTFEVQPQYCGQAIEDSFSRITRMLEARYDFSQVEN-------- 284

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRV 402
                    +   + V L + + ++EE   +A ++R  L +    +   ++  D    +  
Sbjct: 285  -----ELKEDDRTAVQLWQTNTQKEELEFVAKSIRQRLHDGARYRDIRVLLGDVEAYQLQ 339

Query: 403  K-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                  ++ I   +     +       ++ SL            +  L+K  L       
Sbjct: 340  LKTIFDQYQIPFYLGRSEAMVHHPLIQVIESLGRIKQFNYQTEDVINLLKTGL------- 392

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                             +    ++   +  +           H P   +R  + + E   
Sbjct: 393  ---------------YSDLTQEEVDAFEQYLRFAEVKGATKFHKPFTSNRQGKFNLEELN 437

Query: 522  LLVDHILQCITPL-----VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
             L   +++ + P              +    L  +  ++     ++++ L+E        
Sbjct: 438  TLRQRVVEPLAPFFSQRKQKVTQLLTAFTEFLQEAQLSQNLQALIKDLALEEQE-----R 492

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            +++  K    +  ++       +    +++ ++   +     +        + +      
Sbjct: 493  YDQVWKAFLHVLEELNLVFEDQELTVDDFLALLLSGMQLSQYRTVPATVDVVTVQSYDLI 552

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA---------AHD 687
              L    +   GL +  +PK       LS   +  LN  T E    Q             
Sbjct: 553  EPLTAPYVYAIGLTQERFPKIAQNTSLLSEEERQQLNEATQEGAELQVVTSENLKKNRFV 612

Query: 688  FEMANGTR--HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG--------QC 737
                       L+ +     N +    S +L  L        +   + +         + 
Sbjct: 613  AVSLLNAATNQLVLSAPSLVNEMEDSVSPYLVELAKEPIAIEWTTKQAQASSDDIGTYRA 672

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPP----------------------------------- 762
             L    +L            +                                       
Sbjct: 673  LLARVIELHQEEITSELSAEEASFWGVAVRVLRKKLAAEGIQIPQISTELKSSQLQSDTL 732

Query: 763  ----LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                 E +  T S S + +     YA Y R +L L      +  PD    G   H I  +
Sbjct: 733  QALYPEGKALTLSASALNEYYKHQYAFYLRYVLGLQEDETIR--PDARSHGNFLHRIFEK 790

Query: 819  LIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
            ++K   ++      +   +    ++ F++           R L    + +      + Q+
Sbjct: 791  VLKDGSDQAFDRRLNEAIRETSQEAEFQQLYGESGETEFIRQLLLDTAKTTGRVLAQ-QN 849

Query: 877  SIEKIFVNIPAKMAI-------ESIGIHLTGFADRIDLLKS-GFVDITDYKTGDNP-KKE 927
             IE I        +        +   + L G  DRID L+  G + + DYK+       +
Sbjct: 850  GIETIGEETLFGGSTHTSYPLSDGRLLQLRGKVDRIDQLRDRGALGVVDYKSSLTQFHYD 909

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
                 ++ QL    +A++     Q + + +    Y+ +      D + + KK  + D+  
Sbjct: 910  KFFNGLNSQLPTYLSAIQDLKEYQ-EEQGIFGAMYLEMG-----DPVVDLKKTKTVDDAI 963

Query: 988  EKSLKNLIEIVTLLQNGEQPFI 1009
             +++K+  +   L    + P++
Sbjct: 964  NQTMKS-QQYKGLFMAEQAPYL 984


>gi|218232937|ref|YP_002365925.1| ATP-dependent nuclease, subunit B [Bacillus cereus B4264]
 gi|251764581|sp|B7HGP8|ADDB_BACC4 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|218160894|gb|ACK60886.1| ATP-dependent nuclease, subunit B [Bacillus cereus B4264]
          Length = 1171

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 120/1070 (11%), Positives = 283/1070 (26%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 20   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 79   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 134  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 192  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 252  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392
                      E +        + V +  A N R E   +A  +R  + +     +  A++
Sbjct: 298  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 348

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 349  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408

Query: 452  HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497
              L       K  +    +  E   L               +  R               
Sbjct: 409  TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 468

Query: 498  --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
                      ++    P  + +   +     + + + +   +  L         +     
Sbjct: 469  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 529  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 589  VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 649  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 709  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 762  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 822  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 880  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 940  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKVLDLTEVYYGLALQMLTYLDVVTSNA 999

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 1000 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044


>gi|229149443|ref|ZP_04277679.1| ATP-dependent nuclease, subunit B [Bacillus cereus m1550]
 gi|228634085|gb|EEK90678.1| ATP-dependent nuclease, subunit B [Bacillus cereus m1550]
          Length = 1171

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 121/1070 (11%), Positives = 283/1070 (26%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 20   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 79   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 134  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 192  VEKLPQSEYVNGAEIYIDGFHSLSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 252  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392
                      E +        + V +  A N R E   +A  +R  + E     +  A++
Sbjct: 298  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVAEENYRYRDIAVL 348

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 349  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408

Query: 452  HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497
              L       K  +    +  E   L               +  R               
Sbjct: 409  TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 468

Query: 498  --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
                      ++    P  + +   +     + + + +   +  L         +     
Sbjct: 469  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 529  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 589  VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 649  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 709  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 762  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 822  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 880  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 940  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 1000 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044


>gi|228932516|ref|ZP_04095397.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228827206|gb|EEM72959.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
          Length = 1166

 Score =  168 bits (426), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 108/977 (11%), Positives = 251/977 (25%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 102  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 161

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           + I G     P    ++  
Sbjct: 162  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 219

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 220  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 270

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 271  KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 316

Query: 369  EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  + E     +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 317  AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483
                 + S L  I     + A+   VK  L       K  +    +  E   L       
Sbjct: 377  PLVECIRSALEIISGNWRYDAVFRYVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 436

Query: 484  DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522
                    +  R                         ++    P  + +   +     + 
Sbjct: 437  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 497  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 556

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S     ++  +     + +   +I    +        I  +  +     ++
Sbjct: 557  SLSMFTDVMSTGLDALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 616

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPF------------LSRVMQSDLNLKTAEKYIGQ 683
              +L+ +   +           T +                +  +     L   E     
Sbjct: 617  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 676

Query: 684  AA----------------------HDFEMA-----NGTRHLIYTRSLRENNIPTIASRWL 716
            A+                      +D           T  +  +  +++           
Sbjct: 677  ASSFIKKIKRMFPDVKDTFITNDVNDLSRLEQISYVATPEVTLSYVMQQLQT-------W 729

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 730  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 789

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 790  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 847

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 848  ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 907

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYKTGD 922
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK+  
Sbjct: 908  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 967

Query: 923  NP-KKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 968  KSLDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1022

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1023 GDASEAEIEKEILKKFK 1039


>gi|215447498|ref|ZP_03434250.1| putative ATP-dependent DNA helicase [Mycobacterium tuberculosis T85]
          Length = 745

 Score =  168 bits (426), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 96/753 (12%), Positives = 197/753 (26%), Gaps = 103/753 (13%)

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
                + +      +       +  +I         V +  A +   EA  IA ALR +  
Sbjct: 12   RCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAAMIADALRRAHL 71

Query: 384  ENKKKS---ALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFK 439
             +       A+I      A R+   L   G+ +   A G PLS       L ++L A   
Sbjct: 72   IDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGGPLSAEPAVRALLTVLEATAD 131

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
              D      L+  P+           R          R             LV       
Sbjct: 132  GLDGDQALLLLTGPIGGVDPVSLRQLRRT------LQRARPGQTSRKFGDLLVEVLGGDA 185

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
              +        R+       A       L    P       +++       S   +  + 
Sbjct: 186  PPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDP-------RHTLWAAWQRSGLQRRWLA 238

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
              ++      +   +L        ++  +           A+    ++ +T L       
Sbjct: 239  ASEHGGAAAVQATRDLETVTALFDITDHYV-----SRTSGASLRGLVEHVTALQLPVVRP 293

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL------------SRV 667
                 +  + +L    +    +D +++ GL +G+WP    +   L            ++ 
Sbjct: 294  EPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKD 353

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT-- 725
                  L   E+ +   A            + + +    +   + S +   +        
Sbjct: 354  ASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDG 413

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP------------------ 767
            +            L     +                                        
Sbjct: 414  EPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPS 473

Query: 768  --------------------RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                                 T + S ++ L + P    A R    +           + 
Sbjct: 474  EWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRE------LPSA 527

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
             G++ H +  E       ++  ++   + + +  H          +         +  +F
Sbjct: 528  VGSVLHALFAE-----PGRSESQLLAELDR-VWGHLPFGAQWYSAN--ELARHRAMIQAF 579

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFADRIDLLKSGFVDITDYKTGD 922
            ++   + +S + K+ V +    A+E        I L G ADR++   +G + I D KTG 
Sbjct: 580  VQWRAQSRSELTKVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGK 639

Query: 923  NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
             P  +   +    QL++   A+  G     D    A L Y+       +     D     
Sbjct: 640  TPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDP---- 694

Query: 983  ADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013
               L+  +      +V  L        FI+   
Sbjct: 695  ---LTPAARDEWRNLVRQLAAATAGPQFIARRN 724


>gi|229189330|ref|ZP_04316350.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 10876]
 gi|228594124|gb|EEK51923.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 10876]
          Length = 1171

 Score =  168 bits (426), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 128/1063 (12%), Positives = 286/1063 (26%), Gaps = 163/1063 (15%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 20   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 79   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 134  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 192  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 252  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392
                      E +        + V +  A N R E   +A  +R  +       +  A++
Sbjct: 298  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 348

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 349  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408

Query: 452  HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497
              L       K  +    +  E   L             S +  R               
Sbjct: 409  TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDSWMYRRYRSLDDTNGMITDSE 468

Query: 498  --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
                      ++    P  + +   +     + + + +   +  L         +     
Sbjct: 469  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 529  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA--- 659
            +   +I    +        I  +  +     ++  +L+ +   + G         T    
Sbjct: 589  VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648

Query: 660  -KNPFLSRVMQSDLN-------LKTAEKYIGQAAHDF-----EMANGTRHLIYTRSLREN 706
             +  F+   M +  +           E+     A  F      M    + L  T  + + 
Sbjct: 649  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDLFITNDVNDL 708

Query: 707  NIPTIASRW----------------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            +     S                   +R    G  DF+ ++        +W +K      
Sbjct: 709  SRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLS 768

Query: 751  QPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
               Y+             L       S S ++      YA +A+  L L     F    D
Sbjct: 769  SLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLD 826

Query: 805  RTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
              D G LFH  + ++                K    ++ L+ + I    +++ L      
Sbjct: 827  APDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQILLSSNRH 886

Query: 855  IWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--------T 899
             +      +I    S +  E    S    + + +P  M    ++  +   L         
Sbjct: 887  FYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVV 946

Query: 900  GFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS---FSQI 952
            G  DR+D    ++G  + I DYK +            +  Q+      + + +     + 
Sbjct: 947  GRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNAQTWMKKG 1006

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 1007 HAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044


>gi|118476725|ref|YP_893876.1| DNA helicase/exodeoxyribonuclease V, subunit B [Bacillus
            thuringiensis str. Al Hakam]
 gi|251764578|sp|A0RAX6|ADDB_BACAH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|118415950|gb|ABK84369.1| DNA helicase/exodeoxyribonuclease V, subunit B [Bacillus
            thuringiensis str. Al Hakam]
          Length = 1171

 Score =  168 bits (426), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 107/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L+         Y   L+    +         + I G     P    ++  
Sbjct: 167  QLLYDDFERALIGKYL-DSEDYLQLLVENLPQS-EYVKGAEVYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321

Query: 369  EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  + E     +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPNVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYKTGD 922
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK+  
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 923  NP-KKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KSLDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|296501839|ref|YP_003663539.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis BMB171]
 gi|296322891|gb|ADH05819.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis BMB171]
          Length = 1171

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 122/1070 (11%), Positives = 290/1070 (27%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 20   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 79   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 134  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 192  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 252  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392
                      E +        + V +  A N R E   +A  +R  + +     +  A++
Sbjct: 298  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 348

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 349  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSNHPLVECIRSALEIISGNWRYDAVFRCVK 408

Query: 452  HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----K 489
              L       K   R                     A +    R  ++  D   +    +
Sbjct: 409  TELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSE 468

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
              + ++I   ++    P  + +   +     + + + +   +  L         +     
Sbjct: 469  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 529  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 589  VLIANIDHSRLSDVRATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 649  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPDVKDSFITNDVNDL 708

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 709  SRSEQISYVATPKVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 762  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 822  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 880  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 940  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 1000 HTWMKKGGTASPAGVLYFHI-----HNPIVEVKGDASEAEIEKEILKKFK 1044


>gi|330469985|ref|YP_004407728.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
 gi|328812956|gb|AEB47128.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
          Length = 1190

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 118/1063 (11%), Positives = 254/1063 (23%), Gaps = 143/1063 (13%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT---GKKSTILPIIKSLGDVV 85
            TLVE         +    + +   ++R   +LR          G++    P++++     
Sbjct: 108  TLVEAVASRVAEGVDPERILVLTFSRRGAADLRHRIEARIAADGQRVLREPLVRTFPAYA 167

Query: 86   EEKFTADLLLSYNL-NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                              ++  ++ L +  L+ +   +  D      P            
Sbjct: 168  FGLLRRAAAERGEPSPRLLTGPEQDLIIRELLDVVGEESGDD-----PVGWPEDLRPALR 222

Query: 145  AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN- 203
                A  L D++           +L  L  +     W  AA FL+        R V    
Sbjct: 223  TRAFAAQLRDLLMRAAERGVGPVELARLGEKLGRADWPAAARFLREYVAVLALRDVANRG 282

Query: 204  --ASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
              A  P     A      +      + +     + +     + PA   L+ TVA    G 
Sbjct: 283  SVAYDPAELVRAATGMLRDDPELLAVERRRLAYVYVDELADTDPAQRDLLETVAG--GGL 340

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
             ++   D    T  +                 ++    +   L           +RL   
Sbjct: 341  TLVAFADPDSSTYAFRGADPTGVTTFPHRFRTASGAPAAQVLLTTSYRCG----ERLLAA 396

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
            S  +  R                          P        + +    +   EA  +A 
Sbjct: 397  SARLARRLR---------------GPAAHRRMRPVPGTPPGSMEIHTFRSATSEAAWLAH 441

Query: 377  ALRMSLD----ENKKKSALITADRNLARRVKLELTRFGIN-------------------- 412
            ALR +         + + L+ +       ++  L   G+                     
Sbjct: 442  ALREAHLLGGLPWARMAVLVRSTGRQLPTLRRALHAAGVPTVVHGEDLPLHLQPAVAPLL 501

Query: 413  -----------IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                       +D  A + L  +            + +    +A+A   + P  +     
Sbjct: 502  LLLRCALEPDRLDEEAAVALLHSPLGGADPLAERRLRQGLRALALAAGDRRPSGELIVEA 561

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                     +E       +    ++ +      R      +     W++    E    A+
Sbjct: 562  LRDPAELAGVERRWAEPAQTVAGLLAVARETAARPGATAEDVLWAVWRASGLAELWSAAL 621

Query: 522  L----------------------LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                                    +D ++        +          + +       + 
Sbjct: 622  TRGPSVAGEGDLARRRRAEAADRDLDAVMVLFDAAARFTDRLPGARTEVFLDHVLGQELP 681

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    +      L      K L      +      +  +      ++      + + 
Sbjct: 682  ADTLAPTADRGDAVRLLTAHAAKGLEWDLVAVAGVQEGVWPDLRLRGSLLGSERLVDVLA 741

Query: 620  PKIEKSSTLFILGTLESRLLNFD----TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
             + + + T+  L    S LL+ +     + +      +     A             +  
Sbjct: 742  GRADGAGTVATLVGQTSALLDEERRLFHVAVTRARRRLLVSAVASASVGGDDHDEQPSRF 801

Query: 676  TAEKYIGQAAHDFE-----------------------------MANGTRHLIYTRSLREN 706
              E   G    D                                A G+R L  +R  R  
Sbjct: 802  LYELGPGDTPTDEAPTASGDPEPLPAGIETSGTEPPGSETSTSEAGGSRTLPVSRPPRAL 861

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP---KPFPPL 763
             +P + +     L+                  L                RP         
Sbjct: 862  TLPALVAELRTALVDPAAPLARRQAAAAELARLGAAGVSGAHPDDWWGLRPLSDDRPLVD 921

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
            E +P   + S ++  +         R                   G L H          
Sbjct: 922  EGEPVRVTPSGMESALRCSLRWLLERHGGSTPASA------AQGVGNLVHAA-----AML 970

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
                  + + L++ +       E     +    R     +    L         +  I  
Sbjct: 971  AEDARADRSALLEYVAARFDAIELAARWMVGPERARAEAMVDKLLRWLAANPRRLLAIEH 1030

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
                ++      + L G  DR+++ + G + + D KTG +      + +  PQL    AA
Sbjct: 1031 EFAVRLDDPHRPVDLVGRVDRLEVDEDGRLVVIDLKTGKSTTVTEREVVEHPQLGAYQAA 1090

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
            ++AG+F++    +      ++L    +     +        E 
Sbjct: 1091 VEAGAFAEFGD-ESGGAALVQLGTGARDAREQSQPPATDGPEA 1132


>gi|228899818|ref|ZP_04064064.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis IBL 4222]
 gi|228859837|gb|EEN04251.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis IBL 4222]
          Length = 1166

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 120/1070 (11%), Positives = 284/1070 (26%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 15   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 74   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 129  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 187  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E +  L         R    + + L   
Sbjct: 247  LFYETTLTYEKI---------KQVAREEKIEIEKIIPLMEQ-----PRFHSPALAHLEAH 292

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392
                      E +        + V +  A N R E   +A  +R  +       +  A++
Sbjct: 293  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 343

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 344  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403

Query: 452  HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497
              L       K  +    +  E   L               +  R               
Sbjct: 404  TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 463

Query: 498  --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
                      ++    P  + +   +     + + + +   +  L         +     
Sbjct: 464  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 524  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 584  VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643

Query: 663  FLSRVMQSDLNLKTAEKYI---------------------------------------GQ 683
               + +   +  + +E+                                           
Sbjct: 644  LEEQFVMYQMVTRASERLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 704  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 757  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 817  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 875  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 935  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 995  QTWMKKGQAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039


>gi|228913816|ref|ZP_04077441.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
 gi|228845755|gb|EEM90781.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
          Length = 1171

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 111/1052 (10%), Positives = 277/1052 (26%), Gaps = 172/1052 (16%)

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
            +   I+    + +I   + S   +  +        S      +      + L +++   +
Sbjct: 48   QQALIDSEDVRGSIRAQVFSFSRLAWKVLQEVGGASRLH---IDEAGVHMLLRKIVESRK 104

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKY 177
            + L             S+    A      ++L  +I   +       +++ +    +   
Sbjct: 105  DGL-------------SVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHS 151

Query: 178  GMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
                          L++    +   L  +         + L+  +           + I 
Sbjct: 152  SSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYID 209

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
            G     P    ++  +        +   +D        N +        +          
Sbjct: 210  GFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI------ 263

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                ++     I+ E    L         R    + + L        N            
Sbjct: 264  ---KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEMHYEARPNKKFHGE------ 309

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRF 409
               + V +  A N R E   +A  +R  + E     +  A++  +  +    ++   T +
Sbjct: 310  ---ASVTIHTAANLRAEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDY 366

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR--- 466
             I   I    P+S       + S L  I     + A+   VK  L       K   R   
Sbjct: 367  NIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEM 426

Query: 467  ---------------AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPH 507
                              + +    R  ++  D   +    +  + ++I   ++    P 
Sbjct: 427  DEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPV 486

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCL 561
             + +   +     + + + +   +  L         +     +   L  +D  ++    +
Sbjct: 487  IRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVM 546

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKP 620
              +                   + S   + ++  +     + +   +I    +       
Sbjct: 547  SLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATF 606

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-- 678
             I  +  +     ++  +L+ +   +           T +     + +   +  +  E  
Sbjct: 607  VIGVNEGVIPAAPMDEGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKL 666

Query: 679  -------------------------------------KYIGQAAHDFEMANGTRHLIYTR 701
                                                      +  +      T  +  + 
Sbjct: 667  YISCPLADEEGKTLLASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSY 726

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF- 760
             +++           +R    G  DF+ ++        +W +K         Y+      
Sbjct: 727  VMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKL 779

Query: 761  -----PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                   L       S S ++      YA +A+  L L     F    D  D G LFH  
Sbjct: 780  STAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAA 837

Query: 816  ITELIKKRINKNT----------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS 864
            +  +  + + +N             ++ ++ + I    +++ L       +      +I 
Sbjct: 838  LKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQII 897

Query: 865  --HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LL 908
               S +  E    S    + + +P  M    ++  +   L         G  DR+D    
Sbjct: 898  FRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAED 957

Query: 909  KSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYI 963
            ++G  + I DYK +            +  Q+      + + +     +      A + Y 
Sbjct: 958  ENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYF 1017

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
             +      + I   K   S  E+ ++ LK   
Sbjct: 1018 HI-----HNPIVEVKGDASEAEIEKEILKKFK 1044


>gi|229068795|ref|ZP_04202091.1| ATP-dependent nuclease, subunit B [Bacillus cereus F65185]
 gi|228714303|gb|EEL66182.1| ATP-dependent nuclease, subunit B [Bacillus cereus F65185]
          Length = 1166

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 120/1070 (11%), Positives = 282/1070 (26%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 15   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 74   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 129  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 187  VEKLPQSEYVNGAEIYIDGFHSLSPQELEIVRQLMICGARVTITLTIDEKALAQPVNELD 246

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 247  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 292

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392
                      E +        + V +  A N R E   +A  +R  +       +  A++
Sbjct: 293  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 343

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 344  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403

Query: 452  HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497
              L       K  +    +  E   L               +  R               
Sbjct: 404  TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 463

Query: 498  --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
                      ++    P  + +   +     + + + +   +  L         +     
Sbjct: 464  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 524  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 584  VLIANIDHSRLSDVKATFVIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 644  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 704  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 757  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 817  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 875  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 935  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 995  QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039


>gi|256831952|ref|YP_003160679.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
 gi|256685483|gb|ACV08376.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
          Length = 1103

 Score =  168 bits (425), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 119/1030 (11%), Positives = 257/1030 (24%), Gaps = 178/1030 (17%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILP-----IIKS-------------LGDVVEE 87
             V     T++A  EL             + P      I +             L  +   
Sbjct: 66   RVLGLTFTRKAAGELTERIRARLAHLDRVAPGLTSRRIDTNNDRHTTADTPPALSALARP 125

Query: 88   ------KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                   + A L+  + L        RLL  A +  +  + +    +DL  +  +S    
Sbjct: 126  TISTYNSYAASLVTEHGLRIGREPGARLLTEASIWAMVSDIVDHWQEDLDTDYAVSTM-- 183

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHA------LKNEKYGMWWLLAADFLK------ 189
                + LA  LAD +  +     + + L        L               L       
Sbjct: 184  TDAVVTLAGELADHLLTVPEAATQLDHLLESLADLPLAGRSLAPSVAKLGKQLATKRRLL 243

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATAR 244
                 +        +       +       +H       +     +++     +  A  +
Sbjct: 244  DLVSEYHRVKRHSESMDFSDQVVLAAELARDHPFVADTERRRFAVVLLDEYQDTSYAQIQ 303

Query: 245  LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
            L++ +    +G  V    D +     W   +         +         S+A L     
Sbjct: 304  LLTALFG--DGHPVTAVGDPNQSIYGWRGASASGLTRFPRDFPRPNGTPASIASLSTSWR 361

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                               + ++S +          +   L             V +   
Sbjct: 362  ND-----------------AQILSAAHRIALPLASASALPLPTLSTRPGAGTGSVTVGYY 404

Query: 365  DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
             + ++EA  IA             +A++   R     ++  L   G+ +++     L  T
Sbjct: 405  LSAQDEAQGIADFFTRHFVPGMTTAAVLCRARKQFPLLEETLRNAGLPVEVVGLGGLLHT 464

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                 L S+L  +   +   ++  L+  P    G  + +      A EL +     +   
Sbjct: 465  PEIRDLVSMLEVVHDPSRGDSLMRLLTGPRFHLGAHDIHTL-GVWARELSSRAHGYSGPP 523

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA----VLLVDHILQCITPLVTYKTN 540
               L+    +R          P        E    A    +  +  ++  +         
Sbjct: 524  RGALREAADERSIVDALAQLPPRSWQGHHGETFSEAGYERLTQLSALIDALRQQTYLALP 583

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
            +       ++    ++ +               + W         S+ +  +        
Sbjct: 584  EFVDATERALGLDVEVALRAAHRHAETGTTDPSDPWGRAHLDAFRSVVTDFVHQAVHPTL 643

Query: 601  -NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
               + W+D       G            + ++    ++ L +D + +  L++GV+P    
Sbjct: 644  GALLAWLDDARDRERGLDRPTGHLDPHAIHLITVHAAKGLEWDLVAVPALSDGVFPSTAT 703

Query: 660  KNPFLS-------------------RVMQSDLNLKTAEKYIGQAAHD------------- 687
              P                            L+L  A+     A                
Sbjct: 704  TTPRGPTDSGWTSHLGALPFSLRGDAPDLPHLSLADADHDAEIARRLTEFTAQCGHYQVA 763

Query: 688  ------FEMANGTRHLIYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                  +      R  +       R     T  S +L  LL + G    D + + G    
Sbjct: 764  EERRLAYVAYTRARTALLVTGAWWRTGKTATPPSPFLTELLDIDGVQIADLVTEPGDDNP 823

Query: 740  DWTRK--------------------------------------------LDYTTKQPHYK 755
                                                             L    +Q    
Sbjct: 824  HPPDGDTAVWPQSLVDDITKRAADLVMSTRHNGRPILDHIGPVQVHGVDLAQRARQVLNV 883

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
            + +P       P   S S + +L  D      +    +      ++   ++ RGT FH  
Sbjct: 884  QQRPRGSSVIFPDHVSVSGLVELSADREGFLTQYQRPIP-----RQPSPQSRRGTTFHLW 938

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
            + +        +  ++++      D H     L        +  + ++            
Sbjct: 939  VEQFYGHTPLFDMDDLDNTSDS--DDHGTDRTLDELKATFEQSRWARL------------ 984

Query: 876  SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLI 933
                   +     + I   G+ +    D +       G V + D+KTG  P  +  Q+  
Sbjct: 985  ---TPKELEADIDVVIA--GVVIRARIDAVFDDPDRPGGVIVVDWKTGRAPTTDADQRHR 1039

Query: 934  DPQLSLEAAA 943
            + QL++   A
Sbjct: 1040 NVQLAVYRLA 1049


>gi|229090183|ref|ZP_04221431.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-42]
 gi|228693119|gb|EEL46832.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-42]
          Length = 1171

 Score =  168 bits (425), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQRLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           + I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321

Query: 369  EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  + E     +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYKTGD 922
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK+  
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 923  NP-KKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KSLDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|75760178|ref|ZP_00740236.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
 gi|74492342|gb|EAO55500.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
          Length = 1171

 Score =  168 bits (425), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 120/1070 (11%), Positives = 284/1070 (26%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 20   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 79   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 134  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 192  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E +  L         R    + + L   
Sbjct: 252  LFYETTLTYEKI---------KQVAREEKIEIEKIIPLMEQ-----PRFHSPALAHLEAH 297

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392
                      E +        + V +  A N R E   +A  +R  +       +  A++
Sbjct: 298  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 348

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 349  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408

Query: 452  HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497
              L       K  +    +  E   L               +  R               
Sbjct: 409  TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 468

Query: 498  --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
                      ++    P  + +   +     + + + +   +  L         +     
Sbjct: 469  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 529  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 589  VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648

Query: 663  FLSRVMQSDLNLKTAEKYI---------------------------------------GQ 683
               + +   +  + +E+                                           
Sbjct: 649  LEEQFVMYQMVTRASERLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 709  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 762  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 822  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 880  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 940  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 1000 QTWMKKGQAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044


>gi|229120764|ref|ZP_04250007.1| ATP-dependent nuclease, subunit B [Bacillus cereus 95/8201]
 gi|228662769|gb|EEL18366.1| ATP-dependent nuclease, subunit B [Bacillus cereus 95/8201]
          Length = 1166

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 102  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 161

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           + I G     P    ++  
Sbjct: 162  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 219

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 220  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 270

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 271  KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 316

Query: 369  EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  + E     +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 317  AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 377  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 436

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   ++    P  + +   +     + 
Sbjct: 437  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 497  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 556

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 557  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 616

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 617  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 676

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 677  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 730  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 789

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 790  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 847

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 848  ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 907

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 908  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 967

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 968  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1022

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1023 GDASEAEIEKEILKKFK 1039


>gi|30019292|ref|NP_830923.1| ATP-dependent nuclease subunit B [Bacillus cereus ATCC 14579]
 gi|81435561|sp|Q81GQ0|ADDB_BACCR RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|29894835|gb|AAP08124.1| ATP-dependent nuclease subunit B [Bacillus cereus ATCC 14579]
          Length = 1171

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 121/1070 (11%), Positives = 290/1070 (27%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 20   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 79   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 134  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 192  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 252  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392
                      E +        + V +  A N R E   +A  +R  + +     +  A++
Sbjct: 298  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 348

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 349  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408

Query: 452  HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----K 489
              L       K   R                     A +    R  ++  D   +    +
Sbjct: 409  TELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSE 468

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
              + ++I   ++    P  + +   +     + + + +   +  L         +     
Sbjct: 469  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 529  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +  +  ++  +L+ +   + G         T +  
Sbjct: 589  VLIANIDHSRLSDVRATFIIGVNEGVIPVAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 649  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFISNDVNDL 708

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  ++            +R    G  DF+ ++        +W +
Sbjct: 709  SRSEQISYVATPEVTLSYVMQHLLT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 762  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 822  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 880  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 940  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   +  E+ ++ LK   
Sbjct: 1000 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDATEAEIEKEILKKFK 1044


>gi|239617416|ref|YP_002940738.1| ATP-dependent nuclease subunit B-like protein [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506247|gb|ACR79734.1| ATP-dependent nuclease subunit B-like protein [Kosmotoga olearia
           TBF 19.5.1]
          Length = 1030

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 107/885 (12%), Positives = 245/885 (27%), Gaps = 137/885 (15%)

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
             A +    + + DII+ ++  +  ++ + A  +E            ++      ++R  
Sbjct: 103 DLAQSPTFVEYVFDIINDVKEND-GFDKIFAQDDE--------ITLLMRSLYSKLSDRFN 153

Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                      ++L     E         + I G     PA    +  +    +   +  
Sbjct: 154 SNLIYDTFDAYLSLAELSDELHPGEFGETLFIDGFHDFSPAVKAFLEGIVPIFSKVFITA 213

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D +         T             S                              +
Sbjct: 214 PEDANRCELFAEARTIIDFVEEREGKIDSNG--------------------------EII 247

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
                 +S+  LP +      T   E     I +   +V +I A +   E   I+  ++ 
Sbjct: 248 TSEKRFLSEQHLPKNLEPFLKTFFSE---QKITQSCENVEVIVASDIFNEVEYISREIKR 304

Query: 381 SLDENKKK--SALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
           ++    +    A++ +D +   +     L  +GI        PL  +    +L       
Sbjct: 305 TIKSGYEPGDIAIVASDFSRYEKLFSERLDEYGIPFRSEGDEPLLESRAVKMLLLPFETA 364

Query: 438 FKLNDFMAIATLVKHPLAKFGFP---------------EKYLSRAKNALELVALRGNKNS 482
                   I  +                          +      +  +E    R  +  
Sbjct: 365 VNGFKPEKIVAMGDFGYGGSKLDTKFFESIAIQARLIYDYPTLTLQKRVESWEERLERYK 424

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
             +      V +    +     +  ++  +   D E     ++ I Q + P  +      
Sbjct: 425 ELVQRKIRAVEEISDEEFIEQEISGYREVILRVD-EEIEPAIERIFQVLAPFRSLSRRDC 483

Query: 543 S--TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI-- 598
                     S+  ++     + V   E      L  E E   L   F+ ++     +  
Sbjct: 484 RIYREYFYEWSELIRIEERYRKLVEESEEEPFRKLEGERELLALKRFFNDVLPALEELLL 543

Query: 599 -----KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE-- 651
                + +  ++   +  ++   + K      + + I   L +R          G N+  
Sbjct: 544 FLGKERISPADYHRYLMLILRNTSFKSSRAIENRVEIQSLLNARFSRKKIKFFVGFNDGY 603

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE-NNIPT 710
               +      F     ++  +L   ++   +      +   +  L ++      +  P 
Sbjct: 604 YPMIRMNPLYSFTQYDEKAPKDLLLVKEKQQKLNLYLAVTRTSDRLYFSYPESTIDGEPL 663

Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
           + S +LQ ++   G       +K G+   D   +L+    +   K            ++ 
Sbjct: 664 LPSAYLQDVIKSAGVTPERVGQKEGRKV-DIIPELETVMSEKELKIAVANYFNTGHWKSL 722

Query: 771 --------------------------------------SFSEIKQLINDPYAVYARRILK 792
                                                 SFS ++     P++ Y   ILK
Sbjct: 723 KDRFGMGDLEKVLQGFNREFTWIISNRKKIEDHIGKVFSFSRLQSYHKCPFSFYLAYILK 782

Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
           +        +    + G ++HN++ +   K        +   M++ I            +
Sbjct: 783 IQTPEEGLFELTPLEEGNVYHNVLKDYFSKSALDWEKSLEENMRKYIRH------DSELV 836

Query: 853 DIIWRHLFHKISHSFLE-----HEEKIQSSIEKIFVNIPAKM-------AIESIGIHLTG 900
                    ++   +++        K++   E  +  +   M        +E    ++ G
Sbjct: 837 FKFEYERLRRVIAEYIQIKESKKLPKVEGEFEPTYFELGFGMGNQKPVKVLEDA--YIRG 894

Query: 901 FADRIDLLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
             DRID+ K  G + I DYK G++ +KE        QL L + A 
Sbjct: 895 KIDRIDVDKDTGAMYIMDYKRGNSGEKE--------QLILYSIAA 931


>gi|228957510|ref|ZP_04119262.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            pakistani str. T13001]
 gi|228802102|gb|EEM48967.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            pakistani str. T13001]
          Length = 1171

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 121/1070 (11%), Positives = 290/1070 (27%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 20   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 79   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 134  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 192  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 252  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392
                      E +        + V +  A N R E   +A  +R  + +     +  A++
Sbjct: 298  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 348

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 349  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408

Query: 452  HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----K 489
              L       K   R                     A +    R  ++  D   +    +
Sbjct: 409  TELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSE 468

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
              + ++I   ++    P  + +   +     + + + +   +  L         +     
Sbjct: 469  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 529  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 589  VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 649  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 709  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 762  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 822  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 880  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 940  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   +  E+ ++ LK   
Sbjct: 1000 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDATEAEIEKEILKKFK 1044


>gi|229042982|ref|ZP_04190713.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH676]
 gi|228726322|gb|EEL77548.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH676]
          Length = 1166

 Score =  168 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 119/1070 (11%), Positives = 282/1070 (26%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 15   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 74   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 129  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 187  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 247  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 292

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392
                      E +        + V +  A N R E   +A  +R  +       +  A++
Sbjct: 293  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 343

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 344  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403

Query: 452  HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497
              L       K  +    +  E   L               +  R               
Sbjct: 404  TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 463

Query: 498  --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
                      ++    P  + +   +     + + + +   +  L         +     
Sbjct: 464  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 524  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 584  VLIANIDHSRLSDVRATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 644  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 704  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 757  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 817  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 875  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 935  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   +  E+ ++ LK   
Sbjct: 995  QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDATEAEIEKEILKKFK 1039


>gi|229126549|ref|ZP_04255563.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-Cer4]
 gi|228656938|gb|EEL12762.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-Cer4]
          Length = 1171

 Score =  168 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 121/1070 (11%), Positives = 291/1070 (27%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 20   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 79   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 134  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 192  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 252  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392
                      E +        + V +  A N R E   +A  +R  + +     +  A++
Sbjct: 298  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 348

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 349  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408

Query: 452  HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----K 489
              L       K   R                     A +    R  ++  D   +    +
Sbjct: 409  TELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSE 468

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
              + ++I   ++    P  + +   +     + + + +   +  L         +     
Sbjct: 469  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 529  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +  +  ++  +L+ +   + G         T +  
Sbjct: 589  VLIANIDHSRLSDVRATFIIGVNEGVIPVAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 649  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 709  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 762  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 822  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 880  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 940  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   +  E+ ++ LK   
Sbjct: 1000 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDATEAEIEKEILKKFK 1044


>gi|229183443|ref|ZP_04310668.1| ATP-dependent nuclease, subunit B [Bacillus cereus BGSC 6E1]
 gi|228600027|gb|EEK57622.1| ATP-dependent nuclease, subunit B [Bacillus cereus BGSC 6E1]
          Length = 1171

 Score =  168 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           + I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321

Query: 369  EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  + E     +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPNVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYKTGD 922
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK+  
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 923  NP-KKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KSLDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|313902119|ref|ZP_07835530.1| ATP-dependent nuclease subunit B [Thermaerobacter subterraneus DSM
           13965]
 gi|313467637|gb|EFR63140.1| ATP-dependent nuclease subunit B [Thermaerobacter subterraneus DSM
           13965]
          Length = 1217

 Score =  168 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 106/988 (10%), Positives = 239/988 (24%), Gaps = 133/988 (13%)

Query: 45  ASVTIYVP---TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
            ++ + VP   T +  Q L +     TG+       + S   +           +    P
Sbjct: 33  PALVLLVPEQATFQMEQALLAAVRHRTGRAGFARARVASFQRLAWWVQQETGGATR---P 89

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            VS + + L L  L+    ++L    +              A+       +   +  +  
Sbjct: 90  AVSELGKRLILRALLSREAHRLQLFHR-------------VADRPGFIDRMVTTLAELAA 136

Query: 162 EEKKWEDLHALKNEKYGM----WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217
                E L   +             +    L +  + +   L +   + PV    ++ R 
Sbjct: 137 FGIDAEALRRQREAWLAEGREGLLAVKLHDLALLLEAYQGYLEDEGLADPVHALDSVARR 196

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
             +         I + G TG  P   R++  +    +   V   LD              
Sbjct: 197 LGD-CAWLRGARIWVDGFTGFTPGELRVLGALLAVADRVEVTLCLDPAEAAWAVRGQPPG 255

Query: 278 STNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                ++             HP +  A+ L  L  ++                  +    
Sbjct: 256 GPGAGATPHGSHDPDAATLFHPTWQTARQLLELARRQRVTVEPAVTLPPEGAGQRLPR-- 313

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---- 386
                       ++              + ++ A + R E  + A  +     E      
Sbjct: 314 -FRNPALAHLERELFRFPGRRFTGAPDGITVVAAPDRRSEVAAAAREMLRLAREEGYRFR 372

Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
               ++         +       GI + I    P+       ++ + +  +     + A+
Sbjct: 373 DMVVIVRDLDAYHDLISAACAEHGIPLFIDRRRPVGHHPLVELVRAAVEVVAADWPYEAV 432

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALR-GNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              +K  L                   +      +        +  + +  A        
Sbjct: 433 FRYLKTDLVPVARGAVDRLENYVLAFGIRGSLWYRGQPWRWRRRFALDEEEADDPAWQAE 492

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
               +R+ EE           +       V  KT   +    L   D     +   +   
Sbjct: 493 LEAINRIREEATAALRNFHHRVAAARRQPVPVKTLAEAVHQLLLDLDVPGQILRWSEE-A 551

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                        +    +  L  +   +   +     +++ ++   ++G  V       
Sbjct: 552 ERAGDLEAAQEHLQVWNGIGDLLEQAATSLPDLPLTLADFLRVLEAGMEGLRVGLIPPGL 611

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL-------KTAE 678
             +       SR  +     L G  +  +P+    +   +   + +L             
Sbjct: 612 DQVVAGSVERSRHPSARVAFLLGATDDAFPRRIDDDAIFTDGEREELAQAGLELNPPGRI 671

Query: 679 KYIGQAAHDFEMANGTR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTD----------- 726
           + + +  H +      R  L  +  L +     I   WL R L +               
Sbjct: 672 RALHEQYHAYVALTRARDRLWVSYPLGDEEGRAITPAWLTRRLRVLFPALAVTPAVVEGP 731

Query: 727 ----------------------------------------FFDNLKKRGQCYLDWTRKLD 746
                                                        + R +        + 
Sbjct: 732 EGVATASQAVDQLVRMLGRQAGSPAAGEPAAAGWRILYQWAVTEPEARPRALQALQSLVH 791

Query: 747 ----YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
                   Q   ++    P         S S +++L   P+  +A   L L      +  
Sbjct: 792 SNQVEPLGQDLARQLYARPRGPEWEVRTSVSRLERLAACPFQHFAAHGLGLKEREISR-- 849

Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKENLPPHIDIIWRHL 859
            D    G ++H  ++ L ++   +           ++Q++    E        ++     
Sbjct: 850 LDAPQLGRIYHAALSLLARRVWERGLDWADLDEEALEQLVGEAVEALRPRLAEELATSTA 909

Query: 860 FHKISHSFLEH----------EEKIQSSIEKIFVNIPAKMAIESIG-----------IHL 898
           + K   +                  Q     + V +        +            + L
Sbjct: 910 YQKHLLATARRTLVKTASRLAHHARQGRFRPVAVEVDFGPESPVLPAAPWRVGPGEHLAL 969

Query: 899 TGFADRIDL--LKSGFV--DITDYKTGD 922
            G  DRID     SG     + DYK+  
Sbjct: 970 RGRIDRIDAASSPSGRWFLRVIDYKSSS 997


>gi|196037563|ref|ZP_03104874.1| ATP-dependent nuclease, subunit B [Bacillus cereus NVH0597-99]
 gi|196031805|gb|EDX70401.1| ATP-dependent nuclease, subunit B [Bacillus cereus NVH0597-99]
          Length = 1171

 Score =  168 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 106/977 (10%), Positives = 259/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           + I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321

Query: 369  EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  + E     +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH ++  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAVLKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|242242256|ref|ZP_04796701.1| ATP-dependent nuclease Rex subunit B [Staphylococcus epidermidis
            W23144]
 gi|242234272|gb|EES36584.1| ATP-dependent nuclease Rex subunit B [Staphylococcus epidermidis
            W23144]
          Length = 1156

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 137/1041 (13%), Positives = 292/1041 (28%), Gaps = 149/1041 (14%)

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            G +  E    + L            ++ L  A L ++  + +     D      L L  S
Sbjct: 59   GSLRTEVLHFERLSHRVFQEVGGLTEQRLSKAALEMMIFHIVQQHESD------LKLYGS 112

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK-YGMWWLLAADFLKIASKYWTERLV 200
             A    L++ LA+ I   +      E L  L +            + + +  K    R+ 
Sbjct: 113  QAQYYGLSEKLAEQIQDFKKYNVTPEHLDQLIDNHSMQTRTKHKLEDISLIYKQLESRMN 172

Query: 201  ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                ++    Q  +        +K  K  + I G         R++  +  H     VL 
Sbjct: 173  GEFITTEDSLQQFIEILSQSQWIK--KAEVFIDGFHNFSTLEYRIIEALVQHAKQVTVLL 230

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              D           +    ++   ++   +H +    +L   L+    +        +  
Sbjct: 231  TTD----------GSHHPFSLFRKSSEVLSHLEDIANRLNINLNKTYFNTFYRYKNDDLK 280

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR- 379
               +   +  F P                       + V + E+ + REE   +A  +  
Sbjct: 281  NLENGFDALQFTPKHHQ-------------------NHVEIFESSSMREEINEVARRILK 321

Query: 380  --MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                 D   +  A++  D + A   +  L  + I  +I     ++      +L SLL  I
Sbjct: 322  DVREADYKFRDIAILYRDESYAYLFESILPSYDIPFNIDTKKSMTHHPIMEMLRSLLEVI 381

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                   A+  L K  +    F         + LE   L         +D     +D+ +
Sbjct: 382  RSNWHINAMLRLFKTNVLTSQFKRSSYL--IDLLENFVLERGIYGKRWLDEDIFSIDQFS 439

Query: 498  TQKNNTHVP-HWQSRLSEEDKELAVLLVDHILQCITPLV---TYKTNKNSTCGNLSISDW 553
                 +H        L +E  +L   ++D +L     +    T K    S   +L   + 
Sbjct: 440  RMGRKSHQLTEEHQALYKEVIKLKTNVIDKVLYFEQAMNEAHTVKDYATSFYESLEYFEL 499

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                +T    + L    +      ++    L  +   ++      +    +++D+    +
Sbjct: 500  PSQLMTQRDELELAGLTEKAE-EIDQVWNGLIQILDDLVTVFDDQEMTLQQFLDVFDIGL 558

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            +        +    + I     +++ N   + + G+N+G+ P+  + +  ++   +  + 
Sbjct: 559  EQLEFVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGMNDGILPQTVSSSSLITDEEKKYVE 618

Query: 674  L-------KTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNI-PTIASRWLQR----- 718
                     T++      A    +A       + ++ SL  N+      S +L +     
Sbjct: 619  DNAHVELSPTSDILQMDEAFVCYIAMTRSQQSVTFSYSLMGNSGDEKEISPFLTQIKELF 678

Query: 719  -------LLVLGGTDFFDNLKKRGQCYLDWTRKLD-----YTTKQPHYKRPKPFPPLEAQ 766
                   L  L        ++   Q  +     L                       +  
Sbjct: 679  YDLEITNLQDLHEAQPLLMMQHSHQTKIQLFEYLRGWLDHEDIDIRWLDAYIAIRDDDQL 738

Query: 767  PRTY-------------------------------SFSEIKQLINDPYAVYARRILKLDF 795
             +                                 S S  +     P+  YA   L+L+ 
Sbjct: 739  NQGLDYLTTSLTYDNETVQLNETLSQQLYGKTINASVSRFEGYQQCPFKHYASHGLRLNE 798

Query: 796  IPHFKKDPDRTDRGTLFHNII----TELIKKRINKNTPEINHLMKQIIDSHFEK----EN 847
                K +    D G +FH+++      +     N +T  I  L K+ ++    K      
Sbjct: 799  R--TKYELQNFDLGDIFHSVLKYISDRIYGNFKNLDTKNIQSLTKEALELILPKVQFNLL 856

Query: 848  LPPHIDIIWRHLFHKISHSFLEHE--EKIQSSIEKIFVNIPAK--------------MAI 891
                           I  + L+    +   S           +              +  
Sbjct: 857  NSSAYYKYLSKKIGSIVETTLKALKYQGDYSKFVPQRFETGFRKSPKNKDELVAQPLITD 916

Query: 892  ESIGIHLTGFADRIDLL--KSGFVD-ITDYK---TGDNPKKETAQKLIDPQLSLEAAAL- 944
            + I I++ G  DRID           I DYK   +            +  Q+      + 
Sbjct: 917  QGIPINIRGQIDRIDTYTKGDHSYVNIIDYKSSESSATLDLTKVYYGLQMQMMTYMDIVL 976

Query: 945  ---KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSL-KNLIEIVT 999
               +    + I   K   L Y  + + + K     +  +     +  +      L+    
Sbjct: 977  QNKERLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDQFQKDYIKNFKMSGLLNRDQ 1034

Query: 1000 LLQNGEQPFISHLRLSEKSNI 1020
             + +    F   L     S+I
Sbjct: 1035 EVLD---AFDIRLEPKYNSDI 1052


>gi|229114674|ref|ZP_04244088.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock1-3]
 gi|228668739|gb|EEL24167.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock1-3]
          Length = 1166

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 122/1070 (11%), Positives = 293/1070 (27%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 15   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIESEDVRGSIRAQVFSFS-RLAWKVLQE 73

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 74   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 129  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 187  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 247  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLETH 292

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392
                 N    +          + V +  A N R E   +A  +R  + +     +  A++
Sbjct: 293  YEARPNEKYYDE---------ASVTISTAANLRAEVEGVAREIRRLVADETYRYRDIAVL 343

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 344  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403

Query: 452  HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIM----DLK 489
              L       K + R                     + +    R  ++  D      D++
Sbjct: 404  TELLYPLNVRKEMMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDIE 463

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
              + ++I   ++    P  + +   +     + + + +   +  L         +     
Sbjct: 464  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 524  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 584  VLVANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 644  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 704  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756

Query: 744  KLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 757  KSSRVLSSLFYRNRAQKLSTVVSRDLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNT----------PEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  +  +  + + +N             ++ L+ + I    +++ 
Sbjct: 817  IF--KLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 875  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      +   +
Sbjct: 935  GVKMEVIGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTTNA 994

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 995  QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039


>gi|196036226|ref|ZP_03103625.1| ATP-dependent nuclease, subunit B [Bacillus cereus W]
 gi|228926279|ref|ZP_04089353.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|195991201|gb|EDX55170.1| ATP-dependent nuclease, subunit B [Bacillus cereus W]
 gi|228833376|gb|EEM78939.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
          Length = 1171

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           + I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321

Query: 369  EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  + E     +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYKTGD 922
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK+  
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 923  NP-KKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KSLDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|225863092|ref|YP_002748470.1| ATP-dependent nuclease, subunit B [Bacillus cereus 03BB102]
 gi|225789875|gb|ACO30092.1| ATP-dependent nuclease, subunit B [Bacillus cereus 03BB102]
          Length = 1171

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           + I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321

Query: 369  EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  + E     +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|160945991|ref|ZP_02093217.1| hypothetical protein FAEPRAM212_03524 [Faecalibacterium prausnitzii
            M21/2]
 gi|158443722|gb|EDP20727.1| hypothetical protein FAEPRAM212_03524 [Faecalibacterium prausnitzii
            M21/2]
          Length = 1160

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 113/969 (11%), Positives = 249/969 (25%), Gaps = 133/969 (13%)

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
            A+ ID +++     + L  L  +            L +  + +   L       P     
Sbjct: 160  AETIDELKSAGLSGQQLQELARDCGTE--SAKLGELALIFQGYESLLAGTG-MDPADRLE 216

Query: 213  ALMRAEAEHLMK------GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                     L +        +  + I           RLM  +        V    D   
Sbjct: 217  LAADRLEAALARDELPDFLREREVFIDEFDTFNAPKKRLMGAMLAALPAVTVALCED--- 273

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                                + +      L +L              G            
Sbjct: 274  --------GAPMQPGDLELFSGAKQVAAQLRQLARK----------NGAQVAAPELLRRD 315

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
            +     P   +     +      P         A    + E   A +    L        
Sbjct: 316  LRHKDAPGLAALTELLETGSCTPPESAPELRLFAAASREEEARCAAAAIRRLMRQGVRCG 375

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
            K + +          V+ E     I +          +  ++ + +LL  +   +    +
Sbjct: 376  KIAVVCRDISLYRAAVRYEFRMAEIPLYCDEPTTPEFSAPATAVRALLALLRGADMTEQL 435

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              L K  L     PE                    S +    ++          +     
Sbjct: 436  TVLAKTGLCDLTEPEVCALENY---------AYTWSPNAAAWRAEFTKSPRGFGDAELTE 486

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                    ++   A      ++  +  L     + N+   + ++    K      Q    
Sbjct: 487  E-----DTQNLTRAENARKKLVTAVDTLRGKVRSANAEQISRALYFCLKELGAEGQQAVQ 541

Query: 567  DEH-----RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             E                E   +  L  ++            E+ D+ + L+    +   
Sbjct: 542  VEDIRTARGIPAAEEAAREWNVVMQLLDEMARLLGSQGITVPEYEDLFSLLLRSSDLGHI 601

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-----SDLNLKT 676
             +    + +    + RL   D + + GL EG +P   A++  L+   +       ++L  
Sbjct: 602  PQTLDAVVLASAGKMRLDAPDYVFVLGLAEGEFPCTPAESGLLTHADRDLLMAKQIDLPD 661

Query: 677  -AEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQR--------------- 718
              E  + +    F  A       L  +    +      A   +                 
Sbjct: 662  CFENRVVREQVCFYKALTAPAKGLWMSWPKGQGQTLCAALEPIVEALQPAAPQLELIDLA 721

Query: 719  ------LLVLGGTDFFDNLKKR--GQCYLDWTRKLDYTTKQPHYKRPKPFPPLE------ 764
                  L VLGG      L++    +        +         +R +  PP +      
Sbjct: 722  ATPADGLDVLGGGWPLTELERASLTEALRAPGEGVQAPRGLALLQRMEQDPPRQVQDLPT 781

Query: 765  -----AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                  +    S S++++     Y  + + +L L      + +      GTL H ++   
Sbjct: 782  LETLLGRRLHISPSQLEKYYTCRYGYFLQYVLGLKPRR--RAELSADQSGTLMHWVLQMA 839

Query: 820  IKKRINKNTP-------------EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISH 865
            +      + P              +  L   ++D +  +                 K   
Sbjct: 840  LDPHPGADNPCAGLRPFLELDDAAMADLAAALVDEYARRYLPEDTARFAYLLSRLKKSMT 899

Query: 866  SFLEHEE--KIQSSIEKIFVNIP---AKMAIES--------IGIHLTGFADRIDL--LKS 910
            S L +    + QS  + +   +     + A+            + L G  DR D      
Sbjct: 900  SLLCYLRDEQNQSQFKPVACELKIGRGEDAVPGQVYRLSDGRTVQLVGTVDRADEWIEDD 959

Query: 911  GF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
            G   V + DYKTG      +     +D Q+ L   +L   +  +    + A + Y  L  
Sbjct: 960  GTRWVRVVDYKTGSKKLDLKEVYCGLDCQMLLYLFSLTRDAGGRFTGAQPAGVLY--LLA 1017

Query: 968  KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ------PFISHLRLSEKSNIQ 1021
                  +  ++   + +   +  +++  +I   +   E        + +      + + +
Sbjct: 1018 DPAPQTLPREQAARAVEYQLDGLVRDEQKIFDAMDADETGKYLPFGYRNGAPSPYQKDKR 1077

Query: 1022 SEYDHLARV 1030
            ++   L+R+
Sbjct: 1078 ADSAKLSRI 1086


>gi|225019256|ref|ZP_03708448.1| hypothetical protein CLOSTMETH_03209 [Clostridium methylpentosum
           DSM 5476]
 gi|224947887|gb|EEG29096.1| hypothetical protein CLOSTMETH_03209 [Clostridium methylpentosum
           DSM 5476]
          Length = 1119

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 113/925 (12%), Positives = 248/925 (26%), Gaps = 125/925 (13%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             A+ +    D ++                        +  + +    +   L +     
Sbjct: 113 GFAELMLKTADELKNSAISPASFENAVALFPEGNLRDKSREISLIYTTYDGLLNKTYR-D 171

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
           P+      +  +           I              ++  +    +    L       
Sbjct: 172 PLDDLSRAVE-KVRGTGFFEGYDIYFDEFLSFTAVQRGMIEEMMQAADLTFAL------- 223

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               W+             TT       SL  +   L +  E    L             
Sbjct: 224 ---CWDREDGGLLFEPCRKTT------RSLLNMARRLGVGAERPVHLTE----------- 263

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI---AIALRMSLD 383
                           +IL N+I   Q     V ++ A NE  E  ++      L     
Sbjct: 264 --NRLFVHPELAHLERNILRNRIEPYQGTCEHVKVLLAPNEYGEVDAVLSEVWELVQRHG 321

Query: 384 ENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              ++ ALIT D    + V    L ++GI   +   + +         +SLL A     D
Sbjct: 322 YRFREIALITRDLESYQGVLESALRKYGIPYFMDETVSVEHDPLIRFASSLLAAADGGKD 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L +FG  +               +   N     + +  V          
Sbjct: 382 ISPVLALLKCGLTRFGLTQISYFENYLYTWN-ITKDQLNQPFTHNPRGFVD-------RE 433

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
           T      + L++E +     ++  +         Y +        L ++D     V  L 
Sbjct: 434 TEQDGQVTALADEVRAAVAEVISLLRGAEQTARGYGSALFEALHRLGVADVLNQRVERLN 493

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                E +             L  +   +  +   ++     + ++      G  +    
Sbjct: 494 ----GEEKFPEAEEQARLWDVLIDILEVLAHSTGEVRLTLRRYRELFDLSAKGYDLGSIP 549

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---- 678
           +    + I     + + N   + + G  EG++P +   +   +   + +L     E    
Sbjct: 550 QSLDAVMIGSAERTIIGNSRAVFVFGAGEGIFPLSPQFDGVFTDSDREELKKLGVELSKP 609

Query: 679 --KYIGQAAHDFEMANGTRHLIYTRSLR---ENNIPTIASRWLQRLLVLGG--------- 724
               I +       +  +       S R       P   S  + ++  + G         
Sbjct: 610 IGDRILEERFSAYKSLSSPREHLVVSARLADIAGSPLYPSEVITQITKMFGSGVVTYTAD 669

Query: 725 ---------------------------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
                                       +       + + Y D  R+LD   +   ++  
Sbjct: 670 LGLADFCRTKESAFLQLAFHYRSRDGQAEALRRYFAQDEEYGDRLRRLDAAAQTGGFRLY 729

Query: 758 KPFPPLE--AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                     +    S ++++      +  +    +K       K + +    G + H++
Sbjct: 730 DRKNAERLFGRQLAVSPTQVENYYKCGFLFFCANGMKAYPRG--KANLNPLSLGKVTHHV 787

Query: 816 ITELIKKRI--NKNTPEINHLMKQIID---SHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
           + +L+           EI   ++Q++D     F           +  +     + S +E 
Sbjct: 788 LEQLLSTPSFYQMEYEEIAQAVEQLLDGYIDQFMGGKQDKTARFLQLYR--NTARSLVEL 845

Query: 871 EEKIQSSI-----EKIFVN---------IPAKMAI-ESIGIHLTGFADRID-LLKSGF-- 912
              IQ        +               P  + + +   + L G  DR+D   K G   
Sbjct: 846 ARNIQKEFAHCRFQPAAFELEIGDKGAVQPITLPLSDGCSVKLIGEIDRVDSYQKDGKTY 905

Query: 913 VDITDYKTG--DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
           + + DYK+G             ++ Q+ L   +L     ++      A + Y+     F 
Sbjct: 906 IRVVDYKSGAGRTFDLSEIYYGLNLQMLLYLFSLWEQGKAKFGETVPAGVLYLPAGGAFG 965

Query: 971 IDCITNDKKKYSADELSEKSLKNLI 995
              IT  +    A++ +++  K   
Sbjct: 966 SFGITKREG--DAEDAAKEIQKGFR 988


>gi|42780318|ref|NP_977565.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 10987]
 gi|81410612|sp|Q73C24|ADDB_BACC1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|42736237|gb|AAS40173.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 10987]
          Length = 1171

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 108/977 (11%), Positives = 259/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           I I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   LD        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTLDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L             E +        + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEAHY---------EARPNEKFNGEASVTIHTAANLR 321

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   D   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|255657914|ref|ZP_05403323.1| ATP-dependent nuclease subunit B [Mitsuokella multacida DSM 20544]
 gi|260850106|gb|EEX70113.1| ATP-dependent nuclease subunit B [Mitsuokella multacida DSM 20544]
          Length = 1210

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 107/998 (10%), Positives = 256/998 (25%), Gaps = 137/998 (13%)

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
            P +S + R L L ++++  + +             L +           ++L+D+I   +
Sbjct: 88   PRISEVGRRLLLRKILVHHQKE-----------KDLQVFARAVRQRGFTESLSDVIQEFK 136

Query: 161  TEEKKWEDLHALKNEKYGMWWLLA--ADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
            +     + L    +E       LA     + + +  +   +     ++     +  +   
Sbjct: 137  SYRLTTDVLREAADELAKGNERLAGKLQEMALLTDEFAAEM--QGKANDAEDMMNQLAEA 194

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                       + + G     P    ++  +       + +      +         +  
Sbjct: 195  IPEAPLIKGAEVWLDGFIFFNPQEMAVLRALI-MTAAKVHVALPMTGLAEGDGRVRLDLP 253

Query: 279  TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
             N+  +             +    L   R   +        M    +     F P     
Sbjct: 254  ENLQET---------ALFNRPYRTLQAIRRMAREELAYRGPMPIHLLAEQHRFAPQSILH 304

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395
                ++      + Q     V L+EA N R E  S A  +   + +     ++  L+  D
Sbjct: 305  GMEQELFR-YGGSAQSEEQGVQLVEAANRRLEVESAAADILRLVRDEGWHYREIGLLVRD 363

Query: 396  RNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                  +       +GI     A  P      + ++ S +  + +   +  +   ++   
Sbjct: 364  GEAYGDLVRLVFEDYGIPFFEDAKRPSIHHPLAELMRSAIEVVARDWRYETVFRCLRTGF 423

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                  +            +  R      +  D           Q +            +
Sbjct: 424  FPPVREDIDRLENYVLEFGIRGRKRWQQQEPWDWHRRYSLDDGEQVDEDTASTLAL--ID 481

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
              +  +V  +  +   +      +    +    L   +         + V   E R    
Sbjct: 482  SLRRQSVEALSALEDALRAADDVRGYTLALYDFLVQLEVPARLQEWAE-VAEREGRLADA 540

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                +      +LF +++E     K    ++  +++  +D   +         + +    
Sbjct: 541  AEHRQLWDDSMALFDQLVEVSGTEKMTLSDYEAVLSDGLDALQISLIPPGLDYVTLASFD 600

Query: 635  ESRLLNFDTLILGGLNEGVWPKN-TAKNPFLSRVMQSDLNLKT----------------A 677
            ++ L N   L + G +    P+    +  F                              
Sbjct: 601  QNSLDNMRGLYILGADAATMPRRVREQGIFSDADRLHIAETLAAFQKEGEEEHTISRGGH 660

Query: 678  EKYIGQAAHDFEMANGTRH-LIYTRSLRENNI-PTIASRWLQRLLVLGGTDF-------- 727
            EK  G+    +      R  L  + +L +        S  ++++  L             
Sbjct: 661  EKSFGEKFLLYRGFTEARDYLWISYALADAEGNGLQPSPLVKKMRELFPKAAFLSIPLET 720

Query: 728  --------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR----------- 768
                        +       +  R            R      +  +             
Sbjct: 721  VRRDDDLLLAAPRPALSGLANALRGEREHQAMQPCWRDVYNWAMGQKEWQRPLQLALAGL 780

Query: 769  ------------------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                                      S ++ ++    P+A +A   LKL      +    
Sbjct: 781  FARSGAGRIPKELAEQIFAKGTVLRGSVTQFEKFRQCPFAHFAAYGLKLQERR--EYQFR 838

Query: 805  RTDRGTLFHNIITEL-----------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
              D G L H ++ E             +    +    +   +   +    + E L    +
Sbjct: 839  SMDLGQLLHAVLKEYGSIVKRDYANRWQDVPEEKRAALCEELVNTLAPRLQSEILLSRDN 898

Query: 854  IIWR-HLFHKISHSFLEHE--EKIQSSIEKIFVNIPAK----------MAIESI-GIHLT 899
                     K +   + H       S+ +  F                + +     +   
Sbjct: 899  YRHLKKRIEKTAEQAVGHLSAWAAVSAFQPAFFEEAFGHPDDEVHLKPLPLGDGYALSFK 958

Query: 900  GFADRIDLLK-SGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
            G  DR+DL + + +  I DYKTG            +  QL +     +     + + R  
Sbjct: 959  GQIDRLDLHECAPYYLILDYKTGHVAINLFEVYYGLRLQLLVYMMVGRELLKEKGEKRLP 1018

Query: 958  ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            A + Y  L      + +   ++KY+  EL ++    L 
Sbjct: 1019 AGILYAFL-----QNPLLQTRQKYTQAELEKRINAELR 1051


>gi|229154808|ref|ZP_04282923.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 4342]
 gi|228628756|gb|EEK85468.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 4342]
          Length = 1166

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 107/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 102  LSVFQKAAEQNGFFEHLGGMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 161

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           I I G     P    ++  
Sbjct: 162  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 219

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 220  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 270

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    S + L        N               + V +  A N R
Sbjct: 271  KTIPLMEQ-----PRFHSQSLAHLEAHYEARPNEKFHGE---------ASVTIRTAANLR 316

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   +   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 317  AEVEGVAREIRRLVADENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 377  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 436

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   ++    P  + +   +     + 
Sbjct: 437  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 497  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 556

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 557  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 616

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 617  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 676

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 677  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 730  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 789

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 790  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 847

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 848  ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 907

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 908  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 967

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 968  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1022

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1023 GDASEAEIEKEILKKFK 1039


>gi|290580137|ref|YP_003484529.1| putative exonuclease [Streptococcus mutans NN2025]
 gi|254997036|dbj|BAH87637.1| putative exonuclease [Streptococcus mutans NN2025]
          Length = 1080

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 116/961 (12%), Positives = 260/961 (27%), Gaps = 135/961 (14%)

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            + +  L +             L D+   ++       +L+ L + +         + L  
Sbjct: 97   FSDQDLRVFGRLKQDAHFINQLVDLYKELKASNLTVLELNQLNSAE-------KQEDLIK 149

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGSTGSIPATARLMSTV 249
                    L   +  +         + +  HL    +   I++ G T        L+  +
Sbjct: 150  IFTEVETILSAGHFDNQSKIAFFAQQIKFGHLDTALQDLTIVVDGFTRFSAEEENLIGLL 209

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 G  ++ G                      S  +     Q SL  +       +  
Sbjct: 210  HE--KGVDIIIGTYISQKAY-------------RSTFSNGNVYQASLDFIRGLAGKFQTK 254

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
             + + +    +   + +        D SD +     ++K          V + +  N++E
Sbjct: 255  PEYVVSKQEALPAFTKLSQLFESRHDFSDSQLVLTDKDK--------EHVTIWDVINQKE 306

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLE---LTRFGINIDISAGIPLSTTLH 426
            E   +A ++R  L E  +   ++    ++            ++ I         +S+   
Sbjct: 307  EVEHVAKSIRRKLYEGHRYKDILVLLGDVDAYKLQIGKIFDKYEIPYYFGKAESMSSHPL 366

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
               + SL            +  L+K  L                       G      + 
Sbjct: 367  VHFVDSLERVKRYNFRAEDVMNLLKSGL----------------------YGKIRQNQLD 404

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS--T 544
             L+  V+      K             + D +    L   ++  +  LV  +  K     
Sbjct: 405  KLEQYVIYADIKGKTKFFKDFTLDNHGQFDLKALNKLRAEVMSPLQELVKIQAQKGDSIL 464

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                +  +   LT    + +      +      E+  KT + +  +        K    +
Sbjct: 465  QKLTNFLEAISLTNNFSKLIQGVSDTEQEK--NEQVWKTFTVILEQFHTIFGQEKMKLAD 522

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            ++ ++   +     +        + +         +   +   G+ +  +PK       +
Sbjct: 523  FLALLRSGMLAADYRTVPASVDVVTVKSYDLVEPHSNKFVFALGMTQSHFPKIVQNKSLI 582

Query: 665  SRVMQSDLNLKTAE-------KYIGQAAHDFEMA----NGTRHLIYTRSLRENNIPTIAS 713
            S   ++ +N  T                + F         T+ L+ T     N      S
Sbjct: 583  SDEERAKINEATPNNRRFDIVTKENLKKNHFTALSLFNAATQELVLTLPQILNEAEDNTS 642

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQC---------------------------------YLD 740
             +L  L  +G         +                                     +  
Sbjct: 643  SYLLELQDMGVPVVEKGRNRLAADPEDIGNYKALLSRVIELNRSAIDQELSKEEQTFWSV 702

Query: 741  WTRKLDYTTKQPHYKRPK---------------PFPPLEAQPRTYSFSEIKQLINDPYAV 785
              R L     +     P+                      QP   S S +    N+ Y  
Sbjct: 703  AVRYLRQKLAKEGLTIPEVNDKMQTKQVAAEVMAARFPIDQPLNLSSSALTTFYNNQYLY 762

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHF 843
            + + +L L  +      PD  + GT  H +   +++ +   +     +    I   +  F
Sbjct: 763  FLQYVLGLQELETIH--PDARNHGTYLHRVFELVMQDQSTDDFDSKLNRAIDITNHEDSF 820

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
                           +   I+ S     +       +       ++ ++   + + G  D
Sbjct: 821  HLVYNEDEESRYALGILEDIARSTATILKGDNPVQAESE-EEAFELMLDQA-VKIRGVID 878

Query: 904  RIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK-VANLF 961
            RID L  G + I DYK+  N    +     + PQL     AL+  S   ++    +    
Sbjct: 879  RIDRLSDGSLGIVDYKSSKNTFDLQKFYNGLSPQLVTYIEALR--SCKNLNETDKIFGAM 936

Query: 962  YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
            Y+ +      +  T+     S +++ E   KNL     L    E+  +++ +      + 
Sbjct: 937  YLHM-----QEPKTDLANMKSIEKIPETVHKNL-SYKGLFLEDEKAHLANGKYHLHDAVY 990

Query: 1022 S 1022
            S
Sbjct: 991  S 991


>gi|260220996|emb|CBA29119.1| hypothetical protein Csp_A10550 [Curvibacter putative symbiont of
            Hydra magnipapillata]
          Length = 714

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 108/726 (14%), Positives = 211/726 (29%), Gaps = 93/726 (12%)

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
            +         R  D   +    +      + L    +  +EA   A      +  ++   
Sbjct: 63   AHWGSKAELFRLDDAEPHAGTTLNLASDHLHLHACADAEDEAQRAAACAIGHVAADRYPL 122

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            AL+++DR L RRV+  L   GI +    G  LST+   + L +LL A        A+   
Sbjct: 123  ALVSSDRALTRRVRAMLESAGIAMRDENGWKLSTSRAGAALMALLRAAVWNASTDAVLNA 182

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
             K                                      + VL  +        V  W+
Sbjct: 183  FKQ---------------------------------APAFAEVLQALEQALRKEQVRDWR 209

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE- 568
                 +  + +  L           V     +    G+  +  W     + LQ     E 
Sbjct: 210  HVSGCKPVKDSEALS-------AMCVRIDQVRTELSGSRPLPAWLARMQSVLQTCGWWEA 262

Query: 569  ----HRKLPNLWFEEEGKTLSSLFSKIIETG--SCIKANAIEWIDIITRLIDGETVKPKI 622
                      L           ++++ ++    +  + +   +   + ++++  + +P  
Sbjct: 263  LQADEAGAMALEVLRITPPEPQVWAEYVDAALWAGTRMDLSAFSSWVNQVLEAHSFQPAY 322

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                 + IL   +     F  ++L G +E     +       +   ++ L + +  +   
Sbjct: 323  PDEEQVVILPMSQMLARPFAAVVLAGCDEVRLNPSPEPAGIWTPAQRAALGMPSRAELES 382

Query: 683  QAAHDFEMANGTRHL-IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
            +    +  A     + +  RS  +      AS  +Q L +  G         R    +  
Sbjct: 383  RLRASWRQALQAPAVEVLWRSSDDTGEHIAASPLVQWLRLQPGVAEALASDPRTSRQVMP 442

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
               L           P          R  S S  + L   PY  +A R L L  +   + 
Sbjct: 443  ATVL-----------PPQPHGDRIPVRQLSASAYEDLRTCPYRFFALRQLGLKTVDELES 491

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHL---MKQIIDSHFEKENLPPHIDIIWRH 858
            D D+ D G   H ++ E       +    +      ++   +S      LP    + +  
Sbjct: 492  DVDKRDFGLWLHAVLQEFHSALQTEPLSGLEQRGVLLETCANSVTASMGLPDGEFLPFAA 551

Query: 859  LFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
             +  +   +L+  EK  +              A+    + L G  DR D    G   + D
Sbjct: 552  AWPNVREGYLQWLEKHDAQGWTYASGETAHTQAV--GSVMLMGRIDRTDTGTDGATMVLD 609

Query: 918  YKTGDNPKKETAQK----LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
            YKT   P  +T ++    L D Q++  AA L                 YI + ++     
Sbjct: 610  YKT--EPSAKTKERVKNPLEDTQIAFYAALL---------PHDTLQAAYINVGERDGTMP 658

Query: 974  ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY---DHLARV 1030
            +       + D L E    ++  +                 +    +  +Y     L R 
Sbjct: 659  VEQKDIVLARDALVEGIASDMTRLAA----------GEPLPALGDGVACDYCQARGLCRK 708

Query: 1031 AEWREE 1036
              W   
Sbjct: 709  DFWSPS 714


>gi|322435330|ref|YP_004217542.1| putative DNA repair protein [Acidobacterium sp. MP5ACTX9]
 gi|321163057|gb|ADW68762.1| putative DNA repair protein [Acidobacterium sp. MP5ACTX9]
          Length = 896

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 124/873 (14%), Positives = 259/873 (29%), Gaps = 94/873 (10%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             E     +  + + +++ +       L+  T+  ++      S P  + L S  +     
Sbjct: 61   PEIHPLDSWLTTLWHRLTVTGQADRLLLNPTQEHVLWRQIITSDPEVSGLRSPDSLASMA 120

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            A     L  H            +          +    +    L        +  + L  
Sbjct: 121  ASAWRTLCLHNGRTRLPGSATSTDTRAFERWAQT----FQRLCLRQAYLSPAQLPELLTA 176

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
              N     + ++   F     +     D L     +     +   L  A + R E ++ A
Sbjct: 177  TVNLPIPPAGLLLLDFDTLLPAHQTLFDTLSPVAHHQTTTPAPPHLHAAADPRSELLTAA 236

Query: 376  IALRMSLDENKK-KSALITADRNLARRVKLEL--------------TRFGINIDISAGIP 420
              +  +L  N + + A++  D    R     +                     + + G P
Sbjct: 237  NWIAQTLSANPESRIAVVVPDLESRRPEITRIFAQTLSPELQRFPTPATPTPFEFALGQP 296

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            LS T  ++   +LL           I+TL+  P       +   +               
Sbjct: 297  LSHTALAATALNLLTFTLSPLPLDTISTLLLSPYLITPIEQLAAA--------------- 341

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                  +  +  L +    +    +    + L      L+  L             ++T 
Sbjct: 342  ------EFDAFTLRQTRLLRPELTLEALLALLPATLPSLSARLRAL----------HRTA 385

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
            K+      S + W+      L++        L +L F+   +  SS   ++         
Sbjct: 386  KSDLPTQQSHAAWSDTFRALLESAGWTRTAPLDSLAFQTH-RRFSSALDELATLDFDGTH 444

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                        I  +T+      ++ + ILG LE   + FD L      +  WP   + 
Sbjct: 445  PTAAAALATFTRILDQTIFAPESHNAPIQILGPLEIGAVPFDALWFLSAGDLTWPNPPST 504

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAA---HDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            +P +   +Q  LN+  ++    QAA       +A+    +I++ +++ +      S  + 
Sbjct: 505  SPLIPWQLQRALNIPGSDPTQSQAAAQTLTTRIAHSASQVIFSYAVQVDEAHQRPSPSVT 564

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
             L +        +     Q Y     +                PPL   P     + ++ 
Sbjct: 565  ALKLTPLKALEAHTTLAPQPYDIIPDQT-------------TLPPLPDVPLRGGATILQL 611

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------TPEI 831
                 +  +A + L            D  DRG L H ++ EL     ++        P  
Sbjct: 612  QAACAFRAFAEQRLFSSEPQPRTLGLDPRDRGNLVHKVMEELWSCIHDQGELKALTLPAR 671

Query: 832  NHLMKQIIDSHFEKEN------LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
            + L+   I+   ++ +               R     +   +L+ E    +   +     
Sbjct: 672  DSLLADCINHALQRTDRLAQSPWDEAYLGTQRTRLLTLLRPWLDLEAARPAFAVRAR--E 729

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAA- 943
             A    +   + L+   DR+D   +G + I DYKTG   P    + +   PQL L A   
Sbjct: 730  QADRHAQLGPLTLSLRMDRVDETDAG-LVILDYKTGVAAPSDWLSDRPDAPQLPLYAVLT 788

Query: 944  ------LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
                  +   +F+ +      +L          +   T+     + ++  E   + L ++
Sbjct: 789  DQPEEPVAGIAFAILRAGD--DLCLKGYATGDDVFGKTSRMNFPTMEDQLEDWRRVLTQL 846

Query: 998  VTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
             T    G+   +       K+        L R+
Sbjct: 847  ATSFAEGDTAVLPKSYP--KTCAYCAQRILCRL 877


>gi|114775530|ref|ZP_01451098.1| hypothetical protein SPV1_04358 [Mariprofundus ferrooxydans PV-1]
 gi|114553641|gb|EAU56022.1| hypothetical protein SPV1_04358 [Mariprofundus ferrooxydans PV-1]
          Length = 881

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 105/880 (11%), Positives = 229/880 (26%), Gaps = 94/880 (10%)

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
            W    + +            +L A       I     +           +    +   + 
Sbjct: 57   WQRWLNGMARTEPEIPVAYNQLQAIELWEQIIRADLPQGAASASLRGLAVHADSAYALMC 116

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                 ++ +A     A         +             +  ++              LL
Sbjct: 117  EYRMDVNGLAGAGEEAEAFGRWQQQMQQQCRKNGRMLVADTAAALLPGIASAAACSHILL 176

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
            D  D           +   +    + I           +       +     +     V 
Sbjct: 177  DGFDG---YTPMQQALLLALQQAGVNIESVQTTRCEEPLMQLVCCRDAEAEYRHLAGAVK 233

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
             + A+N       +  + R+   +  +     T  +  A  V   L    +      G  
Sbjct: 234  TMLAENPNRRIAIVTASRRVDEAKLGRILDE-TLLQQQALPVGACLQAVHMP-----GPA 287

Query: 421  LSTTLHSSILTSLLNAIFK-LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            LS+    S L  LL+   +    F   + L+  P  K    E+      +AL     R  
Sbjct: 288  LSSMPLISQLLHLLSLAGRSGAGFTDFSRLLFSPGLKGYQDERLARAGLDALLRKHNRHY 347

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
             +   ++  + L                                   +      L     
Sbjct: 348  VSFKSLLASEQL---------------------------------HELKAFADILKQLLL 374

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
             K                +     +  D       +   +       L S +     C  
Sbjct: 375  WKTGRQTAGEWVRAVHGLMQTCGFLQSDPTEARSAIEVRQLNAFRDCLSSLVSMECVCKT 434

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                 ++ ++ ++     + P   +   + ++       + +D     G+++   P+   
Sbjct: 435  LEWSRFLSLLRQVSSETQL-PLPAELPQVSVMPLSAIAGMRYDAAFAIGMDDEALPEPAM 493

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSLRENNIPTIASRWL 716
              P L   MQ   NL  A      AA  F   ++ +    L  + +          S  L
Sbjct: 494  VQPLLPLSMQRKYNLPGATAESAFAASTFLWQQLQHAAPILCLSYACEGEQRELSVSPLL 553

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
              L     T                        +   Y      P  + +      S IK
Sbjct: 554  AGLSESIATVEPVET---------------ELAETESYTDTPAVPLEQNESVYGGASIIK 598

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
                 P+  +A   L +  +   +   D  ++G+L H  +  + +K     + +    + 
Sbjct: 599  NQSACPFRAFATHRLAIVPLDETEPGIDAAEKGSLIHRALEFIWRKL---GSQQALLALD 655

Query: 837  QIIDSHF-----------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
            Q                 ++ ++        +     +   +LE E + +     +    
Sbjct: 656  QAGRETLIAAAVEAAFASDRTSVSGAARGFEQQRMAGVLAEWLEIE-QRRPPFTVVKCEQ 714

Query: 886  PAKMAIE---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK--KETAQKLIDPQLSLE 940
            P ++ +    +    +   ADRID    G   + DYKTG      K   +++ +PQL L 
Sbjct: 715  PYRLQLPQAAATQFSVNIKADRIDKDAEGHQILIDYKTGQGQSIGKWMGERMSEPQLPLY 774

Query: 941  AAALKAGSFSQIDCRKV--ANLFYIRLKQK-----FKIDCITNDKKKYSADELSEKSLKN 993
            A A   G    +   +V   ++ +  L  +         C    ++     ++ E    +
Sbjct: 775  AVAAGLGEHDAVAFARVRSGDMDFEGLSGENTGIHGIAVCDGKSRRPEDWLQVLETWQND 834

Query: 994  LIEIVTLLQNGEQPFISHLRL-SEKSNIQSEYDHLARVAE 1032
            +  +     +G     S +      +      + + R+ E
Sbjct: 835  INALAAEFVSG----RSEVAPVDASACQYCALEAVCRIDE 870


>gi|38233328|ref|NP_939095.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC
            13129]
 gi|38199588|emb|CAE49244.1| Putative ATP-dependent DNA helicase [Corynebacterium diphtheriae]
          Length = 1060

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 138/1056 (13%), Positives = 287/1056 (27%), Gaps = 174/1056 (16%)

Query: 22   IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP--IIK 79
            +  LL  T+ E  R   ++P     + +   ++ +   LR+         S   P  +++
Sbjct: 77   VSTLLMDTVAERIR-RGVSPES---IIVVAASRESAARLRAGIAHRIADGSYTSPASLVR 132

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            S+  +      +       L   ++  ++   +  L+    +               +  
Sbjct: 133  SVHSLAFALLRSLSDEQLRL---ITGAEQDAVIRELLQGHVD------NPSLAAMWPAEA 183

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
                  I  A+ + D +        + EDL  L        W  A  F++   +      
Sbjct: 184  RQALGLIGFAREVRDFLLRSGERGLEPEDLEELGARYGRPMWASAGKFMREYQQ------ 237

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                                          ++  G T S+ A+  +   +          
Sbjct: 238  ------------------------------VMNLGGTHSLNASELVSKLL---------- 257

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
                  IP   W TI              + H     A+LL  L    +     G+    
Sbjct: 258  ---CFDIPDMGWRTI----------IIDDAQHLDPQSAQLLQALMRYTDFTVIAGDPQQS 304

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
            ++       +  L               +     K           +  +++  +A  LR
Sbjct: 305  VFHFRGASPEFLLHAPVDHELTLYSSFRQPTVEAKVLG--------STGDQSEFVADLLR 356

Query: 380  MSLDENK---KKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLN 435
             S           A+I         ++  L   G+ +    + I LS     S L   + 
Sbjct: 357  RSHLLEGIRWNDMAVIVRSTADIPSLRRALLSAGVPVQEDPSDIILSEQRIVSALILAVR 416

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            AI++      +  L   P+         L R    L    +    N   I  ++ L+  +
Sbjct: 417  AIYQELSAQELEELALGPIGG--ADTVTLRRLFRGLRKAEMHAGGNRRAIEIMRELIDPK 474

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
             + ++              E       +VD I   +       + +         S  + 
Sbjct: 475  ESEEQTQLREQVEAVLTDREL-----AVVDKIRAVLVRGAQPGSVEEILWEIWDASALSS 529

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
               T      +   +   +L         +  + +   T S           I  + +  
Sbjct: 530  HLQTVSLRGGVRGAQADRDLDAVMALFDAAGDWVERRPTASITSFVR----HIAEQELPT 585

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
                 ++  +  + I+    S    + T+I+ G+ EG WP          +    DL   
Sbjct: 586  GVRDRRLATADAVRIVTAHGSLGQQWHTVIVAGVQEGTWPSLQETGTLFGQEDLIDLIDS 645

Query: 676  TAEKYIGQAA-----------HDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLVLG 723
              E     +                   GT  ++ T     E++     SR+LQ +    
Sbjct: 646  GIEPNTYISRSAEKLKEEKRLFHVARTRGTHRVVITAVESPESDTAAEPSRFLQGIAESK 705

Query: 724  GTDFFDNLKKR---------GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
                  + +                 + R L   +     +R    P    + R  +  +
Sbjct: 706  VQGPTTDPETASVQSEIDTETVHLDQYVRLLSVPSIVAELRRELANPDSPQRRREQAARQ 765

Query: 775  IKQLI------NDPYAVY--------------------------ARRILKLDFIPHFKKD 802
            + +L         P   +                               +L+ +   +  
Sbjct: 766  LARLALHQVPGARPEQWWGYGGPSETTSLDISKVSPSLIENALLCPLRARLERLVEEENT 825

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHIDIIWRHLFH 861
            P    +GTL H     + +     +  E   L+ Q  ++  +      PH    W  +  
Sbjct: 826  PIHMLKGTLAHAFAEAVGR---GVDPNEAEQLVTQAFEALLDAPAWSLPHHMSQWSTMLQ 882

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
            +++H       + +    ++         + + G+ L G  DR++   +G   I D+KTG
Sbjct: 883  RLAHWIDVSHAQRELVGVEVP-----VNVVVAPGVELRGRIDRLERNDAGEFHIVDFKTG 937

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGSF------------SQIDCRKVANLFYIRLKQKF 969
                 +  +   + QL     AL  G              ++     V     +      
Sbjct: 938  KQAVTKD-EANENKQLLAYQLALHRGKLMQRNGEPAINTTAEQPGLTVDQAVLVYPATDT 996

Query: 970  KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
            K      ++    A+EL EK    L  ++  L   +
Sbjct: 997  KTVTT-REQAPKDAEEL-EKFSATLPALLESLSGPQ 1030


>gi|196044124|ref|ZP_03111360.1| ATP-dependent nuclease, subunit B [Bacillus cereus 03BB108]
 gi|301052777|ref|YP_003790988.1| ATP-dependent nuclease subunit B [Bacillus anthracis CI]
 gi|196024763|gb|EDX63434.1| ATP-dependent nuclease, subunit B [Bacillus cereus 03BB108]
 gi|300374946|gb|ADK03850.1| ATP-dependent nuclease, subunit B [Bacillus cereus biovar anthracis
            str. CI]
          Length = 1171

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           + I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321

Query: 369  EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  + E     +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYKTGD 922
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK+  
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 923  NP-KKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KSLDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|228984310|ref|ZP_04144491.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
 gi|228775427|gb|EEM23812.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
          Length = 1166

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 118/1070 (11%), Positives = 287/1070 (26%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
             E++ E  +     + +  +P   +              G +  + F+    L++ +   
Sbjct: 15   HEVQEELKQRPRGGTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 74   VGGASRLYIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 129  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 187  VEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQLMVCGARVTITLTIDEKTLAQPVNELD 246

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 247  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLETH 292

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALI 392
                 N               + V +  A N R E   +A  +R  +   +   +  A++
Sbjct: 293  YEARPNEKFHGE---------ASVTIRTAANLRAEVEGVAREIRRLVADENYRYRDIAVL 343

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 344  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403

Query: 452  HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----K 489
              L       K   R                     + +    R  ++  D   +    +
Sbjct: 404  TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWISEDPWMYRRYRSLDDTNGMITDSE 463

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
              + ++I   ++    P  + +   +     + + + +   +  L         +     
Sbjct: 464  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRAEE 523

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 524  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   +           T +  
Sbjct: 584  VLIANIDRSRLSNVKATFVIGVNEGVIPAAPMDEGMLSDEERDVLSAAGIELAPTTRQTL 643

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  +  E                                            
Sbjct: 644  LEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMFPDVKDTFITNDVNDL 703

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 704  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756

Query: 744  KLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 757  KSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNT----------PEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  +  +  + + +N             ++ ++ + I    +++ 
Sbjct: 817  IF--KLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSAVVIEEIAPLLQRQI 874

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 875  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 935  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 995  HTWMKKGGTASPAGVLYFHI-----HNPIVEVKGDASEAEIEKEILKKFK 1039


>gi|24379892|ref|NP_721847.1| putative exonuclease RexB [Streptococcus mutans UA159]
 gi|81451162|sp|Q8DT75|ADDB_STRMU RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|24377869|gb|AAN59153.1|AE014982_2 putative exonuclease RexB [Streptococcus mutans UA159]
          Length = 1080

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 120/960 (12%), Positives = 258/960 (26%), Gaps = 133/960 (13%)

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            + +  L +             L D+   ++       +L+ L + +         + L  
Sbjct: 97   FSDQDLRVFGRLKQDAHFINQLVDLYKELKASNLTVLELNQLNSAE-------KQEDLIK 149

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGSTGSIPATARLMSTV 249
                    L   +  +         + +  HL    +   I+I G T        L+  +
Sbjct: 150  IFTEVETILSAGHFDNQSKIAFFAQQIKFGHLDTALQDLTIVIDGFTRFSAEEENLIGLL 209

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 G  ++ G                      S  +     Q SL   +  L  K   
Sbjct: 210  HE--KGVDIIIGTYISQKAY-------------RSTFSNGNVYQASL-DFIRGLAGKF-- 251

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                     E          +F           D  ++++    K    V + +  N++E
Sbjct: 252  -----QTKPEYVVSKQEALPAFTKLSQLFESCHDFSDSQLVLTDKDKEHVTIWDVINQKE 306

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLE---LTRFGINIDISAGIPLSTTLH 426
            E   +A ++R  L E  +   ++    +             ++ I         +S+   
Sbjct: 307  EVEHVAKSIRRKLYEGHRYKDILVLLGDADAYKLQIGKIFDKYEIPYYFGKAESMSSHPL 366

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
               + SL            +  L+K  L                       G      + 
Sbjct: 367  VHFVDSLERVKRYNFRAEDVMNLLKSGL----------------------YGKIRQNQLD 404

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS--T 544
             L+  V+      K             + D +    L   ++  +  L+  +  K     
Sbjct: 405  KLEQYVIYADIKGKTKFFKDFTLDNHGQFDLKALNKLRAEVMSPLQELIKIQAQKGDSIL 464

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                +  +   LT    + +      +      E+  KT + +  +        K    +
Sbjct: 465  QKLTNFLEAISLTNNFSKLIQGVSDTEQEK--NEQVWKTFTVILEQFHTIFGQEKMKLAD 522

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            ++ ++   +     +        + +         +   +   G+ +  +PK       +
Sbjct: 523  FLALLRSGMLAADYRTVPASVDVVTVKSYDLVEPHSNKFVFALGMTQSHFPKIVQNKSLI 582

Query: 665  SRVMQSDLNLKTAE-------KYIGQAAHDFEMA----NGTRHLIYTRSLRENNIPTIAS 713
            S   ++ +N  T +              + F         T+ L+ T     N      S
Sbjct: 583  SDEERAKINEATPDNRRFDIVTKENLKKNHFTALSLFNAATQELVLTLPQILNEAEDNTS 642

Query: 714  RWLQRLLVLG------GTDFFDNLKKRGQCYLDWTRKL---------------------- 745
             +L  L  +G      G +      +    Y     ++                      
Sbjct: 643  SYLLELQDMGVPVVEKGGNRLAADPEDIGNYKALLSRVIELNRSAIDQELSKEEQTFWSV 702

Query: 746  --------------------DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                                D    +              QP   S S +    N+ Y  
Sbjct: 703  AVRYLRQKLAKEGLTIPEVNDKMQTKQVAAEVMAARFPIDQPLNLSSSALTTFYNNQYLY 762

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHF 843
            + + IL L  +      PD  + GT  H +   +++ +   +     +    I   +  F
Sbjct: 763  FLQYILGLQELETIH--PDARNHGTYLHRVFELVMQDQSTDDFDSKLNRAIDITNHEDSF 820

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
                           +   I+ S     +       +       ++ ++   + + G  D
Sbjct: 821  HLVYNEDEESRYALGILEDIARSTATVLKGDNPVQAESE-EEAFELMLDQA-VKIRGVID 878

Query: 904  RIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
            RID L  G + I DYK+  N    +     + PQL     AL++      D  K+    Y
Sbjct: 879  RIDRLSDGSLGIVDYKSSKNTFDLQKFYNGLSPQLVTYIEALRSCKNLN-DTDKIFGAMY 937

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022
            + +      +  T+     S +++ E   KNL     L    E+  +++ +      + S
Sbjct: 938  LHM-----QEPKTDLANMKSIEKIPETVHKNL-SYKGLFLEDEKAHLANGKYHLHDAVYS 991


>gi|332295855|ref|YP_004437778.1| hypothetical protein Thena_1018 [Thermodesulfobium narugense DSM
            14796]
 gi|332178958|gb|AEE14647.1| hypothetical protein Thena_1018 [Thermodesulfobium narugense DSM
            14796]
          Length = 949

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 104/709 (14%), Positives = 226/709 (31%), Gaps = 71/709 (10%)

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            + ++     + + +   L      N K   ++T++ +L   +   +   G   ++S G P
Sbjct: 260  IYQSQTLNGQVLKLRNILEQKKPLNYKDVIVLTSENSLFPVLYNAIP-AGEKYNVSIGYP 318

Query: 421  LSTTLHSSILT----SLLNAIFKLNDFMAIATLVKHPLA--------------KFGFPEK 462
            LS T   S+       L               L+ HP                       
Sbjct: 319  LSRTPIYSLFDMVSILLSRMNNLKFYAKDYINLLFHPYIKTLKFDKFSIVSENFPNIENF 378

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                    ++      NK    + + +                    +        L+  
Sbjct: 379  VTRIIFQKIQENIRNKNKIFISLSEFERNSEIFKEVLDAIKSFDVKINSEDNFTSSLSEF 438

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC---LDEHRKLPNLWFEE 579
            L++   + I   +  K             D+ +  V  L  +    L       N +F  
Sbjct: 439  LIEIHNKVIKLFLNIKN----------FPDFIQRAVDLLDYISIKSLGHLNLYGNNFFRY 488

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
              +TL  L+S  I        N  ++ +++   +    +         + ILG LE+R +
Sbjct: 489  AYETLFDLYSTRISHAK--FKNLNQYFNLLKFFMQSSRIPFSSSILDGIQILGALETRNI 546

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLI 698
            NFD +    +++   P    +  FL++ ++  L+L T ++       +F       + + 
Sbjct: 547  NFDRVFYLDISDDKLPNVNKEELFLTQDIRRILDLPTIKEREELQRTNFINLINSAKEVY 606

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
            +  S  ++      SR+++ ++                  +++          P  K   
Sbjct: 607  FFYSNSDSRTI---SRFVENIVWDLQKIRGSIEMPIDSKGINFQASFAQENPVPIEKNDD 663

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                   +   +S + I + +  P + Y   +L L      ++D    + G + H I+  
Sbjct: 664  II--KFLKDFEFSPTSIDRYLRCPLSFYFAYVLNLKEHKEIEEDISSIEIGNIVHEILHF 721

Query: 819  LIKKRI-----NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
              KK +     N +       + +I+D  F++      +    +        + LE   K
Sbjct: 722  YFKKWLNVEFINVDFDNELKEIYKILDIKFQEIESKEVLLQKEQCRL--ALRNVLEKNIK 779

Query: 874  IQSSIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTG--DNPKKE-- 927
              +S++ +F+       ++   + + L G  DRI  LK     + DYKTG    PK    
Sbjct: 780  ELNSMKILFLEKEFTTKLSFNELKVRLVGRVDRIHKLKD-EYFLIDYKTGVSKIPKSNFL 838

Query: 928  --------TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
                      + +   QL       +   F +I+  ++       LK          + +
Sbjct: 839  PTLENRNLWFENIRSFQLPFYIFLFEE--FKKINFEQIIAGT-WSLKNIDDEKYFQFNYE 895

Query: 980  KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             ++A          L  +++ + N + PF+     +E+      Y  + 
Sbjct: 896  THNA------YFNALKYLISEILNKDVPFLPVSNKTEQRCAFCLYQTIC 938



 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 42/228 (18%)

Query: 49  IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
           +  P +RAI    S+  +     S I P   S+ D V+  +                 +R
Sbjct: 42  VIFPNRRAIHYFYSKIAKRIRTASKI-PATYSIDDFVDYIY-----------------ER 83

Query: 109 LLELARLILIWRNKLPDIIKDLYP---ESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            + + R I I  +     +    P   +S   +  S    I   +      + +      
Sbjct: 84  KINVYRKINIIESIDIIYMLLGNPEKFDSFKKIHNSFEEFIPWGEEFFKNFEELLINNVN 143

Query: 166 WEDLHALKNEKYGMWWLLAA--------------DFLKIASKYWTERLVELNASSPVGYQ 211
           +     +        +  +               DF ++   +++E L     S+     
Sbjct: 144 FNSFDKINVFSSSKLYENSLIYKVLKTDFTNIIKDFFELYKDFYSE-LENRKLSTRASRY 202

Query: 212 IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
             + R E        +   II G +        L   + +     I +
Sbjct: 203 NFVQRIE------LPEKTYIIGGFSRLNKCEEELFKNILSSRKSHIFV 244


>gi|49479136|ref|YP_035377.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis serovar
            konkukian str. 97-27]
 gi|81396897|sp|Q6HM44|ADDB_BACHK RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|49330692|gb|AAT61338.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            konkukian str. 97-27]
          Length = 1171

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 106/977 (10%), Positives = 252/977 (25%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           I I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L             E +        + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEAHY---------EARPNEKFNGEASVTIHTAANLR 321

Query: 369  EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  + E     +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVAEENYRYRDVAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483
                 + S L  I     + A+   VK  L       K  +    +  E   L       
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 484  DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522
                    +  R                         ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISFVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|288553537|ref|YP_003425472.1| hypothetical protein BpOF4_02565 [Bacillus pseudofirmus OF4]
 gi|288544697|gb|ADC48580.1| hypothetical protein BpOF4_02565 [Bacillus pseudofirmus OF4]
          Length = 958

 Score =  167 bits (423), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 114/846 (13%), Positives = 253/846 (29%), Gaps = 132/846 (15%)

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               + +    +  ++           Q+ L K L    I       +             
Sbjct: 158  AIELLDNQKPRVASVYIDGFIDFGPLQFILLKALVSAGIPVTIYLPID---------QEF 208

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
                    + + +      E  +        DV +I A  + EE  ++   +RMS    +
Sbjct: 209  AIIQQTQKELTALGFQMHAETDLSAEPA--EDVDVIAASTKNEEIRAVLEEIRMSPLLYE 266

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
            +   ++  +++ A  ++    ++ I +++     L  ++    +      +         
Sbjct: 267  ETGIIVVDEKDGASLLRYYAEQYKIPLNVPIKKSLDCSISFQFI---HKLLTWDYSKTNR 323

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              L+  PL    F    L                    I  +K+           +    
Sbjct: 324  FELL--PLIDQIFTLHGL------------------KGIDYVKAKEAFLATGDIIHQESR 363

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                R+ E +   +     ++ Q    ++  + +          +  ++L          
Sbjct: 364  ELYQRIKEFNWRKSSSFYHYLKQLSQAVIQLELDGKWRQRQGQETRTSEL---------- 413

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIET--GSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                 +  L   E    L S +++ +E    + +      + D +  L     +      
Sbjct: 414  --KDIVFELKTIERLTELVSDYAEKLEAKHLTDLHMTLDVFADWVLELAKRTELFTARGS 471

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----NLKTAEKY 680
               + +    +  L     + + G+NEG +P       ++      +L     L T E +
Sbjct: 472  KRGIQVHTWRDIGLFEGKKMYVIGMNEGAFPAVHQLGGYVHEKDLYNLPVEGALPTQEHF 531

Query: 681  I-GQAAHDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLVLGGTDFFDNLKKR---- 734
               Q A+  ++    + ++ T +   + N P + S ++++ L   G +     + +    
Sbjct: 532  RHKQQAYFGQLLLAAKSIVCTYTKGLDPNHPHLPSPFIEQWLQKDGRECTFEARMKHSIS 591

Query: 735  ----------------GQCYLDWTRKLDYTTKQ-----PHYKRPKPFPPLEAQPRTYSFS 773
                            G   L+   +L   +++        ++ +          T S +
Sbjct: 592  FSKEDQIEKTAYHMGLGMKVLEPAAELVQLSQRHQYLSEGEEKLEEAHQDSLMKNTVSIT 651

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI------NKN 827
            E++     P+     R+L++  +   ++     D G + H +I  + K+         + 
Sbjct: 652  ELESYARCPFKHGLERVLQVGEVKSIQERISPIDIGQMIHTLIESIYKELDLIGVPFGEC 711

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH---SFLE----HEEKIQSSI-- 878
            T EI + +  ++   FE+                 +      + +     + + +     
Sbjct: 712  TEEIKNEVPVLLKEKFEELWEQIESTAFEISRLDLLLEKEKWWRKINRWWQAERKHFWDN 771

Query: 879  ------EKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTG--DNPKKE 927
                  +   +    ++ +   E   +HLTG  DR+DL + G   I DYKTG      +E
Sbjct: 772  PHLSEMKIHSLETSLRLELELDEGTTLHLTGKVDRVDLDQEG-FTIYDYKTGFAHVKLEE 830

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK----------------- 970
              +  +  QL L A ALK    +     +     YI L++  K                 
Sbjct: 831  EVRSGLKLQLPLYARALKEQLSTTDAALRAHGASYISLREPEKRAGNGIWRSDQIGKSSK 890

Query: 971  ---IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE-QPFISHLRLSEKSNIQSEYDH 1026
                    N +     DE  E     L   V  L  G    F          +    Y  
Sbjct: 891  FLVHHSCKNKEDDLGGDEFMEVYE--LRNKVHSLWKGTHTEFSVRP---LDCSSYCPYKS 945

Query: 1027 LARVAE 1032
            + RV E
Sbjct: 946  VCRVTE 951


>gi|324325257|gb|ADY20517.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus
            thuringiensis serovar finitimus YBT-020]
          Length = 1171

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 107/977 (10%), Positives = 259/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           I I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L             E +        + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEAHY---------EARPNEKFNGEASVTIHTAANLR 321

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   D   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMMTDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFIIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|300932821|ref|ZP_07148077.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens DSM
            45100]
          Length = 1130

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 119/1115 (10%), Positives = 286/1115 (25%), Gaps = 157/1115 (14%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR-SEFIEITGKK 71
            P +     ++ A L                    +    P+K +   +R   F  ++G +
Sbjct: 64   PGTGKTSFLVDAALAHIRAGGSAD---------EIMFVTPSKESATRIRNEIFGALSGGE 114

Query: 72   --STILPIIKSLGDVVEEKFTADLLLSYNLNPP-VSNIQRLLELARLILIWRNKLPDIIK 128
              +    +++S+       + A ++    + P  +S  +  + +  L+            
Sbjct: 115  QYAGTGALVRSVHSWAFAYYRAHMVEQGEVAPRLISGAEHDIVIRELLREHART------ 168

Query: 129  DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188
                             +  A+ L D++          + L  L        W  AA+FL
Sbjct: 169  --STGPWPGDVREAVGYVGFARQLRDVLLRATERGVGPQQLRELGMNYNRPMWTAAAEFL 226

Query: 189  KIASKYWTERLVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243
            +               +S + +       A + +EA          +++  +    PA A
Sbjct: 227  REYQGVANLAGSVDVNASELLHKANEVMEAAVGSEAMQRRMSAVKLLLVDDAHNLDPAAA 286

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            R +      P+   V    D       +    E      +     +   +  L++     
Sbjct: 287  RFVEHF--MPSAERVAIAGDPDQCVFHFRGADEAFLTRYAKEADSARGSRIILSR----- 339

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                          +        ++ + L            +  +        S +  + 
Sbjct: 340  --------------SHRLTAQACLAINHLQTRLPFQPARMPIRGRDSAEGTSDSSLNCVI 385

Query: 364  ADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINID-ISAGIP 420
            A  E    +S+A ALR +       +  A+I         ++  L   G+ +   S  I 
Sbjct: 386  APTETSHNLSVADALRRAHIRGIEYRDMAVIVRSVGKIPALRRVLMNHGVPVQVDSTSIV 445

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKH-----PLAKFGFPEKYLSRAKNALELVA 475
            L+     +++   + A ++      +  L++              E+ +++A     +  
Sbjct: 446  LAEQPLVALILLAVQATYQPLTPAEMKQLLESIVGGADAVMVRRLERAVAKAVRRARIDD 505

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS-EEDKELAVLLVDHILQCITPL 534
                +  +        V             P W        +KE+   ++  +      +
Sbjct: 506  NEEARQHHPNGRPYQAVDYLTWYLNFEDSAPEWVVEYLKTREKEVLQRVIRVLQAGREAM 565

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
             T    +         ++ +               +   +L        L   F +    
Sbjct: 566  KTNAGPEMILWRIWQATELSNALQNRALRGGTVGAQADQDLDAVMNLFDLVGDFVERNPN 625

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
             S          D+  + +       +  + + + IL    +    ++ +++ G+ E  W
Sbjct: 626  ASVKTFV----EDVRAQELPTGGRDRRGVQPNAVEILPAHAAAGREWEFVVVAGVQEETW 681

Query: 655  PKNTAK----------NPFLSRVMQSDLNLKTAEK--------YIGQAAHDFEMANGTRH 696
            P  T               L   + +   L +  +         I +    F +A     
Sbjct: 682  PTTTPTVGGLFSQLDLVDLLDNNVGAAGELPSLVEITAGRVAATIAEERRLFLLAISRSR 741

Query: 697  --LIYTRSLRENNIPTIASRWLQRLLVLGGTDF----------FDNLKKRGQCYLDWTRK 744
               + T            SR++  +  +G ++                 R         +
Sbjct: 742  GATVVTAVNSVGEEGKEPSRFISEIQGVGASEQQVSQPQVTVTEAAELPRVLAVEPMVAE 801

Query: 745  LDY-------------------------------TTKQPHYKRPKPFPPLEAQPRTYSFS 773
            L                                   +            +  +    S S
Sbjct: 802  LRDAVTDSERPHHERVAAARNLARLAHHGVFGAHPDEWWGMAGASTDRVINPEEIRLSPS 861

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            +++ +       +  R              +    G + H I    +      +  +   
Sbjct: 862  QLQLMDECVLRSFLDRNSGEQER------TEAMRIGEMVHAIAEGFVH---GLSLEDALR 912

Query: 834  LMKQIIDSHFEKENLPPH-IDIIWRHLFHKISHSFL-EHEEKIQSSIEKIFVNIPAKMAI 891
            +++ +I             +   W     ++      + +    +  E        +  I
Sbjct: 913  IVEVVIPEVSTVAWWRAESLKRNWTEGIERLHKWMRGQLDGLDVARGEGAVAEQVLRTTI 972

Query: 892  ----ESIGIHLTGFADRIDL------LKSGFV--DITDYKTGDNP-KKETAQKLIDPQLS 938
                + I + L+G AD +         ++G +   + D+K+G  P   + A++   PQL 
Sbjct: 973  GSTGDGIEVLLSGRADLLITQVRTMDSEAGALGTWVIDFKSGKEPISGDDAKE--SPQLR 1030

Query: 939  LEAAALKA-----GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
                 L A      + +            +    K     I       S DE+ E+    
Sbjct: 1031 AYQYLLHAQSQDPAAGADRGKWSPLGAKLVYPGAKRSTMAIREQLSAESNDEVLEEFRNR 1090

Query: 994  LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                   +                   +  Y  L 
Sbjct: 1091 ----ALKIAELSNGPRIRPTPGSH-CDKCNYQFLC 1120


>gi|229171885|ref|ZP_04299454.1| ATP-dependent nuclease, subunit B [Bacillus cereus MM3]
 gi|228611595|gb|EEK68848.1| ATP-dependent nuclease, subunit B [Bacillus cereus MM3]
          Length = 1171

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 114/977 (11%), Positives = 262/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           I I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSQALAHLETHYEARPNEKFHGE---------ASVTISTAANLR 321

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   D   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D  ++    +  + +RI   ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTDEMITDSEREMEERINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 636  SRLL---NFDTLILGGLN-EGVWPKNTAKNPFLSRVMQSDL-------NLKTAEKYIGQA 684
              +L     D L + G+       +   +  F+   M +              E+     
Sbjct: 622  EGMLSDEERDVLSVAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 685  AHDFE----------------------------MANGTRHLIYTRSLRENNIPTIASRWL 716
            A  F                                 T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTVVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEMK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|121605094|ref|YP_982423.1| exonuclease-like protein [Polaromonas naphthalenivorans CJ2]
 gi|120594063|gb|ABM37502.1| DNA helicase/exodeoxyribonuclease V, subunit B [Polaromonas
            naphthalenivorans CJ2]
          Length = 855

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 109/698 (15%), Positives = 192/698 (27%), Gaps = 81/698 (11%)

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406
             +    +      +L  A ++ +EA   A  +   L + +   ALI  DR L RRV   L
Sbjct: 229  PEDEPDRPGAPQPSLHAALDDEDEAARAAACVLAHLAQGRSPVALIAQDRQLTRRVAAML 288

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
             R GI +    G  LST+  ++ L  LL A+       A+   +K+  A           
Sbjct: 289  ARRGIAMRDETGWKLSTSRAAASLMGLLRALPWDVSTDAVLDWLKNAPAFASGTVTAAET 348

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                  + A R                                        +L    ++ 
Sbjct: 349  EVRKFGVRAWR----------------------------------------DLPAAPLEA 368

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
            +             ++S      ++ W +     LQ+    E         +     L  
Sbjct: 369  LAVAQPLARQVNQLRDSLSRPRPLAAWLRDLRAALQSAGQWELLASDEA-GQRVLDVLRL 427

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
                 IE          E+   + + ++ +T  P+   +  + IL   +        ++L
Sbjct: 428  HEGADIEFEDAPAMKLREFTSWVNQALEAQTFSPEHPAAEQVVILPLAQLLGRAMQAVVL 487

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
             G +E   P +       +   +  L L + E     A   ++      H+       E 
Sbjct: 488  PGCDEIRLPVSPEPPGQWTPGQRELLGLPSREALARVARQAWDYTLQLPHVDLLWRTSEA 547

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                + S ++Q +L+            R    +     L                     
Sbjct: 548  GEHLMPSGFVQEILLSRSLAADRAGDPRRLRAVAACPTLRPLPTGEALP----------- 596

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
             R  S S    L   PY  +A R L L      + +  + D G   HN++    +     
Sbjct: 597  VRRLSASSYGDLRACPYRFFALRQLGLHESDELESELGKRDFGNWLHNLLCRFHEALKEA 656

Query: 827  NTPEINHLM-------KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
               ++   +       +Q         +        W  +          HE        
Sbjct: 657  PAHDLPARIAMINVAAEQAAKELGLSHSEFLPFAAAWTPVRDGYLAWLAGHEAT---GAR 713

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETAQKLI-DPQL 937
                     M +    + L G  DR+D L  G + + DYKT       E  +  + D QL
Sbjct: 714  FDMAEQWLDMPL-GSELTLIGKIDRMDRLPGGELLLIDYKTEPRATTAERIKNGLEDSQL 772

Query: 938  SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
            +  AA +                 Y+ L +K               D L +  L ++  I
Sbjct: 773  AFYAALVAD---------DTLGAAYVNLGEKEPTRSYDQPDIVALRDALIDGILSDMARI 823

Query: 998  VTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWRE 1035
                               K+        L R   W E
Sbjct: 824  AEGAPLPALG-------EGKACDYCAARGLCRKDFWSE 854


>gi|315927430|gb|EFV06768.1| hypothetical protein CSQ_1123 [Campylobacter jejuni subsp. jejuni
            DFVF1099]
          Length = 694

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 86/457 (18%), Positives = 146/457 (31%), Gaps = 59/457 (12%)

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +E    +      I +          E I +    I   ++         + ++G LE
Sbjct: 282  EKQELMYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 339

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694
            SR L FD +IL   NE   PK +    FL+  ++    L + ++        +E      
Sbjct: 340  SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 399

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
              +       E       SR+L  L      DFF       + YL+  +      K    
Sbjct: 400  LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 452

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                P           SFS    L N     Y R IL L       ++    ++G   H 
Sbjct: 453  PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 512

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            ++    K   N +         ++  +  +KE    +I  +   +F      F ++E++ 
Sbjct: 513  MLEIYYKNYANNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFMQFAKNEKEH 566

Query: 875  QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
             S     +   +     + + +  I L G  DRID  K G + I DYK+G  P       
Sbjct: 567  FSKGFYVVHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 620

Query: 932  LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                QL+   A         F  ++  ++                    +K  S DEL  
Sbjct: 621  --SYQLAFYQALYDENASVGFYDLNSMQI------------------LHQKAKSLDEL-- 658

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
               + L ++V L+   E  F        + +    Y 
Sbjct: 659  --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 686


>gi|218563083|ref|YP_002344862.1| hypothetical protein Cj1482c [Campylobacter jejuni subsp. jejuni NCTC
            11168]
 gi|112360789|emb|CAL35589.1| hypothetical protein Cj1482c [Campylobacter jejuni subsp. jejuni NCTC
            11168]
          Length = 788

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 86/457 (18%), Positives = 146/457 (31%), Gaps = 59/457 (12%)

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +E    +      I +          E I +    I   ++         + ++G LE
Sbjct: 376  EKQELMYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694
            SR L FD +IL   NE   PK +    FL+  ++    L + ++        +E      
Sbjct: 434  SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
              +       E       SR+L  L      DFF       + YL+  +      K    
Sbjct: 494  LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                P           SFS    L N     Y R IL L       ++    ++G   H 
Sbjct: 547  PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            ++    K   N +         ++  +  +KE    +I  +   +F      F ++E++ 
Sbjct: 607  MLEIYYKNYANNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFMQFAKNEKEH 660

Query: 875  QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
             S     +   +     + + +  I L G  DRID  K G + I DYK+G  P       
Sbjct: 661  FSKGFYVVHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714

Query: 932  LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                QL+   A         F  ++  ++                    +K  S DEL  
Sbjct: 715  --SYQLAFYQALYDENASVGFYDLNSMQI------------------LHQKAKSLDEL-- 752

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
               + L ++V L+   E  F        + +    Y 
Sbjct: 753  --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 780


>gi|293368344|ref|ZP_06614972.1| ATP-dependent nuclease subunit B [Staphylococcus epidermidis
            M23864:W2(grey)]
 gi|291317591|gb|EFE58009.1| ATP-dependent nuclease subunit B [Staphylococcus epidermidis
            M23864:W2(grey)]
 gi|329734889|gb|EGG71189.1| helicase-exonuclease AddAB, AddB subunit [Staphylococcus epidermidis
            VCU045]
          Length = 1159

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 140/1042 (13%), Positives = 292/1042 (28%), Gaps = 149/1042 (14%)

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            G +  E    + L            ++ L  A L ++  + +     D      L L  S
Sbjct: 59   GSLRTEVLHFERLSHRVFQEVGGLTEQRLSKAALEMMIFHIVQQHESD------LKLYGS 112

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL-AADFLKIASKYWTERLV 200
             A    L++ LA+ I   +      E L  L              + + +  K    R+ 
Sbjct: 113  QAQYYGLSEKLAEQIQDFKKYNVTPEHLDQLIENHSVQTRTKHKLEDISLIYKQLESRMN 172

Query: 201  ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                ++    Q  +        +K  K  + I G         R++  +  H     VL 
Sbjct: 173  GEFITTEDSLQQFIEILSQSQWIK--KAEVFIDGFHNFSTLEYRIIEALVQHAKQVTVLL 230

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              D           +    ++    +   +H +    +L   L+    +        +  
Sbjct: 231  TTD----------GSHHPFSLFRKPSEVLSHLEDIANRLNINLNKTYFNTFYRYKNDDLK 280

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR- 379
               +   +  F P                       + V + E+ + REE   +A  +  
Sbjct: 281  NLENGFDALQFTPKHHQ-------------------NHVKIFESSSMREEINEVARRILK 321

Query: 380  --MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                 D   +  A++  D + A   +  L  + I  +I     ++      +L SLL  I
Sbjct: 322  DVREADYKFRDIAILYRDESYAYLFESILPSYDIPFNIDTKKSMTHHPIMEMLRSLLEVI 381

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                   A+  L K  +    F         + LE   L         +D     +D+ +
Sbjct: 382  RSNWHINAMLRLFKTNVLTSQFKRSSYL--IDLLENFVLERGIYGKRWLDEDIFSIDQFS 439

Query: 498  TQKNNTHVP-HWQSRLSEEDKELAVLLVD---HILQCITPLVTYKTNKNSTCGNLSISDW 553
                 +H        L +E  +L   ++D   H  Q +    T K    S   +L   + 
Sbjct: 440  RMGRKSHQLTEEHQALYKEVIKLKTNVIDKVLHFEQAMNEAHTVKDYATSFYESLEYFEL 499

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                +T    + L    +      ++    L  +   ++      +    +++D+    +
Sbjct: 500  PSQLMTQRDELELAGLTEKAE-EIDQVWNGLIQILDDLVTVFDDQEMTLQQFLDVFDIGL 558

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            +        +    + I     +++ N   + + G+N+G  P+  + +  ++   +  + 
Sbjct: 559  EQLEFVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGMNDGTLPQTVSSSSLITDEEKKYVE 618

Query: 674  L-------KTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNI-PTIASRWLQR----- 718
                     T++      A    +A       + ++ SL  N+      S +L +     
Sbjct: 619  DNAHVELSPTSDILQMDEAFVCYIAMTRSQQSVTFSYSLMGNSGDEKEISPFLTQIKELF 678

Query: 719  -------LLVLGGTDFFDNLKKRGQCYLDWTRKLD-----YTTKQPHYKRPKPFPPLEAQ 766
                   L  L        ++   Q  +     L                       +  
Sbjct: 679  YDLEITNLQDLHKAQPLLMMQHSHQTKIQLFEYLRGWLDHEDIDIRWLDAYLAIRDDDQL 738

Query: 767  PRTY-------------------------------SFSEIKQLINDPYAVYARRILKLDF 795
             +                                 S S  +     P+  YA   L+L+ 
Sbjct: 739  NQGLDYLTTSLTYDNETVQLNETLSQQLYGKTINASVSRFEGYQQCPFKHYASHGLRLNE 798

Query: 796  IPHFKKDPDRTDRGTLFHNII----TELIKKRINKNTPEINHLMKQIIDSHFEK----EN 847
                K +    D G +FH+++      +     N +T  I  L K+ ++    K      
Sbjct: 799  R--TKYELQNFDLGDIFHSVLKYISDRIYGDFKNLDTKNIQSLTKEALELILPKVQFNLL 856

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK--------------MAI 891
                           I  + L+  +     S           +              +  
Sbjct: 857  NSSAYYKYLSKKIGSIVETTLKALKYQGEYSKFVPQRFETGFRKSPKNKGELVAQPLITN 916

Query: 892  ESIGIHLTGFADRIDLL--KSGFVD-ITDYK---TGDNPKKETAQKLIDPQLSLEAAAL- 944
            + I I++ G  DRID           I DYK   +            +  Q+      + 
Sbjct: 917  QGIPINIRGQIDRIDTYTKGDHSYVNIIDYKSSESSATLDLTKVYYGLQMQMMTYMDIVL 976

Query: 945  ---KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
               +    + I   K   L Y  +    +             D+  +  +KN    ++ L
Sbjct: 977  QNKERLGLTDI--VKPGGLLYFHV---HEPRIKFKSWADIDEDQFQKDYIKNFK--MSGL 1029

Query: 1002 QNGEQPFISHLRLSEKSNIQSE 1023
             N +Q  +  L +  +    S+
Sbjct: 1030 LNRDQEVLDALDIRLEPKYNSD 1051


>gi|289759337|ref|ZP_06518715.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T85]
 gi|289714901|gb|EFD78913.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T85]
          Length = 729

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 96/734 (13%), Positives = 192/734 (26%), Gaps = 103/734 (14%)

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLA 399
              +  +I         V +  A +   EA  IA ALR +   +       A+I      A
Sbjct: 15   RSVGRRIEGTGTEVGSVTVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRA 74

Query: 400  RRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
             R+   L   G+ +   A G PLS       L ++L A     D      L+  P+    
Sbjct: 75   VRLPRALAAAGVPVAPPAVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVD 134

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                   R          R             LV         +        R+      
Sbjct: 135  PVSLRQLRRT------LQRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTA 188

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
             A       L    P       +++       S   +  +   ++      +   +L   
Sbjct: 189  AARCHRSGSLGGQDP-------RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETV 241

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                 ++  +           A+    ++ +T L            +  + +L    +  
Sbjct: 242  TALFDITDHYV-----SRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALG 296

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ------------SDLNLKTAEKYIGQAAH 686
              +D +++ GL +G+WP    +   L                     L   E+ +   A 
Sbjct: 297  HEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAM 356

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRK 744
                       + + +    +   + S +   +        +            L     
Sbjct: 357  GRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAV 416

Query: 745  LDYTTKQPHYKRPKPFPPLEAQP------------------------------------- 767
            +                                                           
Sbjct: 417  VGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDD 476

Query: 768  -RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
              T + S ++ L + P    A R    +           +  G++ H +  E       +
Sbjct: 477  LVTLTPSTLQALNDCPLRWLAERHGGTNTRE------LPSAVGSVLHALFAE-----PGR 525

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
            +  ++   + + +  H          +         +  +F++   + +S + K+ V + 
Sbjct: 526  SESQLLAELDR-VWGHLPFGAQWYSAN--ELARHRAMIQAFVQWRAQSRSELTKVGVEVD 582

Query: 887  AKMAIESIG-----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
               A+E        I L G ADR++   +G + I D KTG  P  +   +    QL++  
Sbjct: 583  IDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQ 641

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
             A+  G     D    A L Y+       +     D        L+  +      +V  L
Sbjct: 642  LAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQL 694

Query: 1002 QNGEQP--FISHLR 1013
                    FI+   
Sbjct: 695  AAATAGPQFIARRN 708


>gi|229101823|ref|ZP_04232538.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-28]
 gi|228681616|gb|EEL35778.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-28]
          Length = 1166

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 115/1052 (10%), Positives = 282/1052 (26%), Gaps = 172/1052 (16%)

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
            +   IE    + +I   + S   +  +        S      +      + L +++   +
Sbjct: 43   QQALIEREDVRGSIRAQVFSFSRLAWKVLQEVGGASRLH---IDEAGVHMLLRKIVESRK 99

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKY 177
            + L             S+    A      ++L  +I   +       +++ +    +   
Sbjct: 100  DGL-------------SVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHS 146

Query: 178  GMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
                          L++    +   L  +         + L+  +           I I 
Sbjct: 147  SSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVNGAEIYID 204

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
            G     P    ++  +        +   +D        N +      + +          
Sbjct: 205  GFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELDLFYETMLTYEKI------ 258

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                ++     I+ E    L         R    + + L        N    +       
Sbjct: 259  ---KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLETHYEARPNEKYYDE------ 304

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRF 409
               + V +  A N R E   +A  +R  + +     +  A++  +  +    ++   T +
Sbjct: 305  ---ASVTISTAANLRAEVEGVAREIRRLVADETYRYRDIAVLLRNGESYYDVMRTLFTDY 361

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR--- 466
             I   I    P+S       + S L  I     + A+   VK  L       K + R   
Sbjct: 362  NIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKEMMREEM 421

Query: 467  ---------------AKNALELVALRGNKNSYDIM----DLKSLVLDRIATQKNNTHVPH 507
                              + +    R  ++  D      D++  + ++I   ++    P 
Sbjct: 422  DEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDIEREMEEKINRLRDVVRTPV 481

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCL 561
             + +   +     + + + +   +  L         +     +   L  +D  ++    +
Sbjct: 482  IRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEESGDFLFATDHEQVWEEVM 541

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKP 620
              +                   + S   + ++  +     + +   +I    +       
Sbjct: 542  SLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQVLVANIDHSRLSDVKATF 601

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-- 678
             I  +  +     ++  +L+ +   + G         T +     + +   +  + +E  
Sbjct: 602  IIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTLLEEQFVMYQMVTRASEKL 661

Query: 679  -------------------------------------KYIGQAAHDFEMANGTRHLIYTR 701
                                                      +  +      T  +  + 
Sbjct: 662  YISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDLSRSEQISYVATPEVTLSY 721

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF- 760
             +++           +R    G  DF+ ++        +W +K         Y+      
Sbjct: 722  VMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKL 774

Query: 761  -----PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                   L       S S ++      YA +A+  L L     F    D  D G LFH  
Sbjct: 775  STVVSRDLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAA 832

Query: 816  ITELIKKRINKNT----------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS 864
            +  +  + + +N             ++ L+ + I    +++ L       +      +I 
Sbjct: 833  LKRIADRLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQILLSSNRHFYLKQKLQQII 892

Query: 865  --HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LL 908
               S +  E    S    + + +P  M    ++  +   L         G  DR+D    
Sbjct: 893  FRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVIGRIDRVDKAED 952

Query: 909  KSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYI 963
            ++G  + I DYK +            +  Q+      +   +     +      A + Y 
Sbjct: 953  ENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTTNAQTWMKKGHAALPAGVLYF 1012

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
             +      + I   K   S  E+ ++ LK   
Sbjct: 1013 HI-----HNPIVEMKGDASEAEIEKEILKKFK 1039


>gi|258512042|ref|YP_003185476.1| ATP-dependent nuclease subunit B-like protein [Alicyclobacillus
            acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478768|gb|ACV59087.1| ATP-dependent nuclease subunit B-like protein [Alicyclobacillus
            acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 1169

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 113/1027 (11%), Positives = 276/1027 (26%), Gaps = 126/1027 (12%)

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL--- 172
            +     +L         E  L           L  +L    D +       E L AL   
Sbjct: 86   LTQVGRQLLLRAAYDELEPSLGPLRRAVRNPSLYHHLLSAFDELAAHGVSPEQLGALLEM 145

Query: 173  --KNEKYGMWWLLA--------ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                         A           +      + +       + P    +  + A A H+
Sbjct: 146  SAARSDEVEDKQRAVHRSLVGKLGDVLKLYVRYRQLAEAAGFADPALLYLDAVHA-APHV 204

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
                   + + G     PA  + +S +A      ++    D  +    W  + E++++  
Sbjct: 205  SWLEDASLYLDGFHAFSPAERQFISALARRAKRLVITWE-DTGLEGERWEALLEEASSPA 263

Query: 283  SSNTTY---STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +          H ++  ++          +  R     +       +   +      +  
Sbjct: 264  AWPHLSVWVDAHEEHFSSESQAVAAYHLLECARDFAQVSLDQAFCRMPIGATEGRFGASP 323

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKKKSALITADR 396
                         ++    V +    +  EE  ++A  +           +  A+     
Sbjct: 324  LVYLERALAGHAPEQPIRGVRVSAFGDRAEELCAVADEIAHLVQHERVRPRDIAVCVPTV 383

Query: 397  NLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            +   R    EL   G+ + I +   L+      +L   + A+    D   IA L++ PL 
Sbjct: 384  DGIGRDLADELEVRGVPVSIDSFATLADHPVGQLLRGAIGAVRTGFDLDTIAALLRCPLV 443

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                 E +    +                    ++    R A+   +      + +L + 
Sbjct: 444  PVKRREAFDLYLREHGVSGFAAWLAPEPWAFAARA---PRSASGLRDEEADEIRRQLGDA 500

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             + +        L+ +           +     +++          Q+V       +  +
Sbjct: 501  LRPVIQAFAQPTLRLLEAARALWELLQAFRVKDALA----------QSVVQVGDDPMAGV 550

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              E+    +++L   +      I   A E  D++   +    +         +F+     
Sbjct: 551  IHEQAWSGVTALLDDLATLEPEIALPAYEVADLVLESMASLRLTRIPSDVDAVFVCDFAR 610

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ--------SDLNLKTAEKYIGQAAHD 687
            +   +   + +   ++   P     +  L    +          L   + ++        
Sbjct: 611  ADNWSRPRVFVVAADDASLPPRVEPSGILRDDERLAFAEVFLRPLGRTSEDERRALECMP 670

Query: 688  FEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVL------GGTDFFDNLKKRGQCYLD 740
            + +       L+ T +  E  I    +  L  L+                     Q    
Sbjct: 671  YRVMTRASEALVVTYAASEGGIERHLAPALASLVERGHLSIDAARGEGAVPVHPVQAMRL 730

Query: 741  WTRKLDYTTKQPHYKRP--------------------------------KPFPPLEAQPR 768
                L        ++R                                 +P P       
Sbjct: 731  LADALSRVHTGAPFERVTQDPVVQDVLTYMWTGAGDVARFQRVLAGLCHRPRPWRLPAEW 790

Query: 769  ---------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                       S S ++      Y  +A+  L+L+ +    +     + GT  H  +   
Sbjct: 791  IRDLYGDPIRVSVSRLETYAKCSYRHFAQYALRLEPLALQPEAE--RNAGTWIHAAVQLA 848

Query: 820  IKKRINK-------NTPEINHLMKQIIDSHFEK-----------ENLPPHIDIIWRHLFH 861
             ++  +           E+   + +I     E+           E     + +  R    
Sbjct: 849  TQRLADDHRRLSELGHEELETALLEIAHQALEQAAQDTKLQSTLERPDVAVYVEERRRHF 908

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAK----MAIESIGIHLTGFADRIDLLKSGFVD--I 915
            +     +   +  +  +  +++    +     A   + + L G  DR+D L+ G +   +
Sbjct: 909  EFVVRAI-WMQLARGQMRPLWLEKEFRDVDMGAWNGVRVVLDGRIDRVDRLEQGELALCV 967

Query: 916  TDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFS-QIDCRKVANLFYIRLKQKFKIDC 973
             DYK+ +         + +  QL + AA     + + +    ++   FY+ L  K     
Sbjct: 968  YDYKSSETSLHPSKVHQGLQLQLLMYAAMAMREAEAVERASARLYGAFYMPLVAKRDALD 1027

Query: 974  ITNDKKKYSADELSEKSLKNL---IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA-- 1028
            +  D+++ SA   + ++          +  +     P    +   ++      +   A  
Sbjct: 1028 VPPDQREVSAQLSAYRARGFFLRDEGAILRVNEDLAPGRGSVLFGKQFRTDGAWAADATA 1087

Query: 1029 -RVAEWR 1034
             R  EW+
Sbjct: 1088 WREDEWQ 1094


>gi|312865918|ref|ZP_07726139.1| ATP-dependent nuclease subunit B [Streptococcus downei F0415]
 gi|311098322|gb|EFQ56545.1| ATP-dependent nuclease subunit B [Streptococcus downei F0415]
          Length = 1114

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 128/967 (13%), Positives = 279/967 (28%), Gaps = 158/967 (16%)

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            + E  L +  S A      + L D+   ++       DL  L++E      +   D L I
Sbjct: 97   FKEGDLKIYGSLAKDPNFIQQLVDLYQEMQRSNLTISDLADLESE------VKYQDLLTI 150

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPATARLMSTV 249
             S ++ + L E N  S       L    +  L        +I+ G +        L++ +
Sbjct: 151  FSAFY-QLLQEDNFESQTKIAQFLEHVNSGQLDQDLQNLVVIVDGFSRFSAEEEALVTAL 209

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
             +     ++                T  S     S+       Q ++  LLD        
Sbjct: 210  HDREVEIVI---------------GTYASQKAFKSSFLAGNLYQANVEFLLDLGQKFAVR 254

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
             + LG    +   R   + ++            D   +     Q+    + + E  N++E
Sbjct: 255  AQVLGERQEDSLSRLSALLEAKR----------DFSSDLPEISQEDKQALTIWEVVNQKE 304

Query: 370  EAISIAIALRMSLDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426
            E  ++A ++R  L++    K   L+  D    +       +++ I   +     +S    
Sbjct: 305  EVEAVARSIRNLLNQGVRYKDILLLLGDVEAYQLQIAKTFSKYEIPYYLGKEEAMSHHPL 364

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
             + + SL+           +  L+K  L K                   +R         
Sbjct: 365  VNFVESLMRIKRYNFRAKDLLNLLKSGLFKDLMN------LDIDKFEQYVRFADIKGQAK 418

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
              K   ++R A   +   V          D      +   ++  +  L + ++   S+  
Sbjct: 419  FSKDFTVNREAGLDDEGQVIEKY------DLVRLNQIRRAVMTPLLELFSSRSLLGSSLL 472

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE-EGKTLSSLFSKIIETGSCIKANAIEW 605
                  + +          L + +    L  EE   ++   L  ++ +     K +  ++
Sbjct: 473  TKKFLPFLEAIDLPANMAQLAKGQNQAGLEREEEVWQSFCDLLEQMDDIFGGTKLSLDDF 532

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            + ++ + +     K        + I         +   +   G+    +P+ +     L+
Sbjct: 533  LALLGQGMMAANFKLVPATLDVVNIKDYKLIEPHSSPYVFALGMTASNFPRLSQTTGLLT 592

Query: 666  RVMQSDLNLKTAEKYIGQAAHD----------FEMAN------GTRHLIYTRSLRENNIP 709
               +  +N   A +   +  H           F           ++ L+ +      +  
Sbjct: 593  DEERQQINETLASQ--DRQGHFEISGQEEVKKFHAVMISLVNSASQSLVLSAPQISADSQ 650

Query: 710  TIASRWLQRLLVLGGTDFFDNL---------------------------------KKRGQ 736
               S +LQ L+ LG                                         K++  
Sbjct: 651  DQLSPYLQDLVDLGFEPILKKPAGFASQPTDLGTYKALLSRIIEANQLSQNQDLDKEQTT 710

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPP---------------LEAQPRTYSFSEIKQLIND 781
             +    R+L    K+     P                       QP   S S +    N+
Sbjct: 711  FWSVMVRRLRQKLKEVDLAIPTISQDLTVEPLSQETLDLLYPADQPLKLSASSLTTFYNN 770

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII-- 839
             Y  + +++L L         PD    G   H +   L+ K    ++   + L+ + +  
Sbjct: 771  QYGYFLQKVLNLQEEDSIH--PDFRQHGIYLHRVFERLMSKL--DDSSNFDQLLSRTLSQ 826

Query: 840  ---DSHFEKENLPPHIDIIWRHLFHKISHS------------FLEHEEKIQ--------- 875
               +  F++           R +   I+ +             L+  +            
Sbjct: 827  VNQEEAFQQVYSYDQEAQFSREILEGIAQAMTHILRDNHLVQVLDKAQARHYLGQRNWQK 886

Query: 876  SSIEKIFVNIPAKMAIESIG---IHLTGFADRIDLLKSGF---VDITDYKTG-DNPKKET 928
            +  ++  + +   + +       + + G  DR+D L S     + + DYK+G      E 
Sbjct: 887  TPAQQKALELGFNLQLPLGQERKLEIRGQIDRLDQLSSSESPNLGVVDYKSGDKKFSLEE 946

Query: 929  AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                + PQL     A++          +V    Y+ L      +      +  S  +  +
Sbjct: 947  FYNGLSPQLLTYILAIRESMPQDYQA-QVFGAGYLHL-----QNPELKFSEVASLGQSLD 1000

Query: 989  KSLKNLI 995
            K  K   
Sbjct: 1001 KFDKAFR 1007


>gi|227494917|ref|ZP_03925233.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831369|gb|EEH63752.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 1088

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 125/1055 (11%), Positives = 274/1055 (25%), Gaps = 161/1055 (15%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
             V + VP +     L++    +     +    P   +L     + +  +          +
Sbjct: 69   DVLVLVPDRLRADYLQATVESLLPGIVRPVKTP--VALAYKYLQTWYVERAEPRLFPQLL 126

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            +  +  +ELA+L+                E P ++P            L ++ +      
Sbjct: 127  TGAREDIELAQLLET-----------CAVEWPENIPADLRALPAFRMELRNLFERAREAG 175

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIAS--------KYWTERLVELNASSPVGYQIALM 215
                 L AL   +    W+ A   L++                L            I+  
Sbjct: 176  LDGAGLVALGESEREEIWVSAGKLLQLWETLPLSVGSAETPALLTTAQLQETAAQVISAW 235

Query: 216  RAEAE----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
              EAE             +I+        AT  L+  +A    G +++   +  I  A +
Sbjct: 236  SVEAEKQQVSAALEVPRVVIVDDLQDCTVATLNLLVALAK--QGTVIVATANPDIAVATY 293

Query: 272  NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                             ST            L       + L  V +++ G   V   + 
Sbjct: 294  RGGEPHLDGRFREALQVSTL----------QLGPTYRGNQVLSKVVDKLTGFLPVAGGAD 343

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSAL 391
                 S   +              + +V  I      +                 +  A+
Sbjct: 344  RRKFGSVNADESASAGVAQLYASAYQEVTGIIRQLNYQHLHE---------KVEYQDMAV 394

Query: 392  ITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNA-------------- 436
            I    +     +  L R GI     S  I       +++L  LL+A              
Sbjct: 395  IVRRSHEVEHFRQALVRNGIPTSVNSRAITYLHKPITAMLLLLLSAENVAVKVLTDEFGQ 454

Query: 437  -IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             +    + + +  LV+ PL K    +    R    L         N +++      +   
Sbjct: 455  QLEVQQELLILEQLVRSPLVKI---DPLKLRRVTDLVGQLSERELNLWELFTKVQELDRA 511

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                 +       ++  + E++    +++  +   +  L       +   G   +   T 
Sbjct: 512  TDKTSDEAERAIRKTLKTTENQATVQVMLQCLS--LIHLGRELQEASPNVGVWKLWQATG 569

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
            L  + ++         +      +   +L        +      A      +++ + I  
Sbjct: 570  LEDSFVKLALAGTSESVSADDRLDAVISLCRTADVWQQRHPEGTA-LDFANELVAQTIPS 628

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR--------- 666
            + +    ++ + + +L  +++    +  + + G+   VWP    +N              
Sbjct: 629  DNLATIAQRPAGIEVLTVMQAAGRQWPVVFVAGVQSDVWPNLAIRNRLTKASQISLKVHH 688

Query: 667  ------VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
                             +  + +        + +   ++  ++   +        L    
Sbjct: 689  PELKGLPQTQIFKQLKLQSRVDELRTFVAAVSRSSEKLFISAVSGEDTAQSVFFDLAAEE 748

Query: 721  VLGGT--------------------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK-- 758
             L                            L  + +       +L      P   R    
Sbjct: 749  FLSAESVSDNFDVLQQIVELRELPVAEMRPLVAKLRRLSAQDTQLLEAEINPELARVAEQ 808

Query: 759  ---------------------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                                         P         S S I+ L+N P   +  R  
Sbjct: 809  ILASLALQGVRIADPLNWTGTRLEEISHAPVFPGDKPVLSPSAIESLLNCPAQWFLSRHG 868

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
                             GTL H I  +        +  ++   ++   D           
Sbjct: 869  GSRK------STGAAGLGTLIHTIAEKYPH----GDAEQMLADLEIFWDDGEYNRETELG 918

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
                      KI         +  +      V +  +++++     + G  DR++ +  G
Sbjct: 919  RRAYTDAR-EKIVK-----LAQCFADFGNGEVEVEKRISVDVGIATIMGVIDRLEHI-DG 971

Query: 912  FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
             V +TD KTG  P  +  QK    QL+    AL    +      +V     + L++K   
Sbjct: 972  AVRVTDIKTGYVPSVKETQKH--KQLAFYQYALMKAGY------EVMGARLLGLREKDPA 1023

Query: 972  DCITND--KKKYSADELSEKSLKNLIEIVTLLQNG 1004
              I +        + EL   +  +L   V  ++  
Sbjct: 1024 KYIQSSIMGDTEISKELLANTEADLQLAVERVRGP 1058


>gi|229160193|ref|ZP_04288192.1| ATP-dependent nuclease, subunit B [Bacillus cereus R309803]
 gi|228623154|gb|EEK79981.1| ATP-dependent nuclease, subunit B [Bacillus cereus R309803]
          Length = 1171

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 118/1070 (11%), Positives = 276/1070 (25%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
             E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 20   HEVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 79   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 134  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        + + 
Sbjct: 192  VEKLPQSEYVNGAEIYIDGFHSFSPQELEILRKLMMCGARVTITLTIDEKTLAQPVSELD 251

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 252  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLETH 297

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392
                 N               + V +  A N R E   +A  +R  +       +  A++
Sbjct: 298  YEARPNEKFHGE---------ASVTISTAANLRAEVEGVAREIRKLVANEQYRYRDIAVL 348

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 349  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408

Query: 452  HPLAKFGFPEKYL-SRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497
              L       K       +  E   L               +  R               
Sbjct: 409  TELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTSGMITDSE 468

Query: 498  --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
                      ++    P  + +   +     + + + +   +  L         +     
Sbjct: 469  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 529  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 589  VLVANIDHSRLSNVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  +  E                                            
Sbjct: 649  LEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMFPDVKDSFITNDVNDL 708

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 709  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761

Query: 744  KLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 762  KSSRVLSSLFYRNRAQKLSTAVSRDLYGDTIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 822  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 880  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFALPN 939

Query: 899  ------TGFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D  +      + I DYK+             +  Q+      + + +
Sbjct: 940  GVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSAKALDLTEVYYGLALQMLTYLDVVTSNA 999

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 1000 QTWMKKGGTASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044


>gi|313683464|ref|YP_004061202.1| hypothetical protein Sulku_2342 [Sulfuricurvum kujiense DSM 16994]
 gi|313156324|gb|ADR35002.1| hypothetical protein Sulku_2342 [Sulfuricurvum kujiense DSM 16994]
          Length = 780

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/490 (16%), Positives = 161/490 (32%), Gaps = 75/490 (15%)

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                  + + L E     +L    +        S  +E       +      I    +  
Sbjct: 342  QFSQLEEMMMLWEGGDESSLEVIRDELHRFGHLSHALEV-----MDFRAVFKIFMNRLRQ 396

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
            +++     +   + ++G LE+R + F+ +++   NEG  P  + K+ FL+   +    L 
Sbjct: 397  KSI--DDVRGGKITVMGLLETRGVAFEGVVIVDFNEGYVPHKSEKDLFLNTKTREYAGLP 454

Query: 676  TAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            +A        H + +     + +            ++ SR+L +L +      +   +  
Sbjct: 455  SAHDRESLQKHYYSILFNRAKRVAIGCVQN---AESVPSRFLLQLGIKSIPAAYRYEEVL 511

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                    R++     +            +      S S IK  ++     Y R I  + 
Sbjct: 512  FPPPAFNVRQVKSFECE-----------YDFTAHPLSASGIKSFLSCKRQFYYRYIEHIR 560

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-EINHLMKQIIDSHFEKENLPPHID 853
                 +      D G   H+ + +L       ++  +I   ++   ++    + L  H+ 
Sbjct: 561  DHELPRDLSQERDIGNALHSALEKLFIDAAEYSSAVKIKEALRNQWENTAADDPLERHMK 620

Query: 854  IIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
             +W          F E E    +   + ++    A+  +E  GI L+G  DRID +  G 
Sbjct: 621  RLWLDKL----DPFYEQEAARFASGAKVLYTEKEARAVVE--GITLSGRIDRIDEVV-GR 673

Query: 913  VDITDYKTGDNPKKETA--QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
             ++ DYK+G  P  +    +  +D QLS+ A     G F       VA   Y  L +   
Sbjct: 674  FEVIDYKSGKFPDTDKEPKESDVDYQLSVYALLA--GEF-----GDVARCGYYDLNKGEL 726

Query: 971  IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
                         ++  E   + L EI++ + + +                         
Sbjct: 727  K-----------VEQFLEAKTEKLREILSEMASKKT------------------------ 751

Query: 1031 AEWREEYDIS 1040
             EW    D+S
Sbjct: 752  WEWEMCEDLS 761


>gi|228971237|ref|ZP_04131866.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228788472|gb|EEM36422.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
          Length = 1166

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 120/1070 (11%), Positives = 283/1070 (26%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 15   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 74   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 129  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 187  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGAKVTIPLTIDEKTLAQPVNELD 246

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 247  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 292

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392
                      E +        + V +  A N R E   +A  +R  + +     +  A++
Sbjct: 293  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 343

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 344  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403

Query: 452  HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497
              L       K  +    +  E   L               +  R               
Sbjct: 404  TELLYPLDVRKEVMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSE 463

Query: 498  --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
                      ++    P  + +   +     + + + +   +  L         +     
Sbjct: 464  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 524  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 584  VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 644  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 704  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 757  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 817  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 875  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 935  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 995  QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039


>gi|57238505|ref|YP_179636.1| hypothetical protein CJE1655 [Campylobacter jejuni RM1221]
 gi|57167309|gb|AAW36088.1| conserved hypothetical protein [Campylobacter jejuni RM1221]
 gi|315058936|gb|ADT73265.1| hypothetical protein CJS3_1562 [Campylobacter jejuni subsp. jejuni
            S3]
          Length = 788

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 86/457 (18%), Positives = 146/457 (31%), Gaps = 59/457 (12%)

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +E    +      I +          E I +    I   ++         + ++G LE
Sbjct: 376  EKQELMYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694
            SR L FD +IL   NE   PK +    FL+  ++    L + ++        +E      
Sbjct: 434  SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
              +       E       SR+L  L      DFF       + YL+  +      K    
Sbjct: 494  LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                P           SFS    L N     Y R IL L       ++    ++G   H 
Sbjct: 547  PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            ++    K   N +         ++  +  +KE    +I  +   +F      F ++E++ 
Sbjct: 607  MLEIYYKNYANNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660

Query: 875  QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
             S     +   +     + + +  I L G  DRID  K G + I DYK+G  P       
Sbjct: 661  FSKGFYVVHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714

Query: 932  LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                QL+   A         F  ++  ++                    +K  S DEL  
Sbjct: 715  --SYQLAFYQALYDKNASVGFYDLNSMQI------------------LHQKAKSLDEL-- 752

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
               + L ++V L+   E  F        + +    Y 
Sbjct: 753  --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 780


>gi|228938358|ref|ZP_04100969.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            berliner ATCC 10792]
 gi|228977846|ref|ZP_04138228.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis Bt407]
 gi|228781864|gb|EEM30060.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis Bt407]
 gi|228821304|gb|EEM67318.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            berliner ATCC 10792]
 gi|326938867|gb|AEA14763.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis serovar
            chinensis CT-43]
          Length = 1171

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 120/1070 (11%), Positives = 283/1070 (26%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 20   REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 79   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L  +         + L+
Sbjct: 134  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              +           I I G     P    ++  +        +   +D        N + 
Sbjct: 192  VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGAKVTIPLTIDEKTLAQPVNELD 251

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 252  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392
                      E +        + V +  A N R E   +A  +R  + +     +  A++
Sbjct: 298  Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 348

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 349  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408

Query: 452  HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497
              L       K  +    +  E   L               +  R               
Sbjct: 409  TELLYPLDVRKEVMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSE 468

Query: 498  --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
                      ++    P  + +   +     + + + +   +  L         +     
Sbjct: 469  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 529  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 589  VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 649  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 709  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 762  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 822  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 880  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 940  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 1000 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044


>gi|81428520|ref|YP_395520.1| ATP-dependent exonuclease, subunit B (ATP-dependent exonuclease,
            subunit B) [Lactobacillus sakei subsp. sakei 23K]
 gi|123564301|sp|Q38X70|ADDB_LACSS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|78610162|emb|CAI55211.1| ATP-dependent exonuclease, subunit B (ATP-dependent exonuclease,
            subunit B) [Lactobacillus sakei subsp. sakei 23K]
          Length = 1186

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 110/993 (11%), Positives = 253/993 (25%), Gaps = 157/993 (15%)

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
            P +S     + + RL+   + +L     ++     ++          L K L      ++
Sbjct: 89   PRISTAGLNMLVFRLLQEHQEQLQLFRGEVRHTGFVA---------QLTKQLL----ELK 135

Query: 161  TEEKKWEDLHALKN--EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
                   DL A+        +        L I +  +   + +    +        +   
Sbjct: 136  IGCITPADLTAMAENLGDQQVELAKKLHDLTIIATAFEAAMQKRFIENTALIDALTLFL- 194

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                   T     + G          L++T+       I    LD   P    + +    
Sbjct: 195  --QQQTLTDCHFYVEGFAQFTAQEQALLTTLMQQSEVQIGFI-LDRAYPNQQPDGLNFFF 251

Query: 279  TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       T+        L+ + +  + +     ++  +                  
Sbjct: 252  QAG-------RTYYNLYQQARLNHVPVMMDQMADSQRLTPALAALDQF------------ 292

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALITAD 395
              +++   N+  +       + ++ A+N   E   +A  +R  +       +   ++T  
Sbjct: 293  WVSSESPGNRKLSPVPVADHLHVVAAENRYAELRYVAREIRRLVQTGHYRYRDFLILTRH 352

Query: 396  RNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                + +    LT + I         ++     S+L  LL+       +  +  L+K  L
Sbjct: 353  LAPYQTMIAPILTEYEIPYFCDLPQTMAAHPLVSLLEKLLDVNLHFYRYEDVMALLKTEL 412

Query: 455  A-KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA--TQKNNTHVPHWQSR 511
                G          +  E + L+      D ++       R     +   T      + 
Sbjct: 413  LIPKGMSIAEFRADLDLCENLILKNGYEGKDWLNDFDWQFYRFGSYQEGTRTTQDEALTE 472

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                 +      +    + +    T +         L      +  +       L  ++ 
Sbjct: 473  RINGIRRYVQATLPPFYRALKAAKTGRQVVQVLYQFLIDHGVDRQLLHWRDQ-ALAANQV 531

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKA------NAIEWIDIITRLIDGETVKPKIEKS 625
                  E+   T   +  + +     +           E+  +++               
Sbjct: 532  AQAGQPEQTWSTFMQMLDEYVTLLGDVSFEEDNTEQLNEFKQLLSAGFAAAQYAQIPSTL 591

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------- 672
              + +  +   +        + G  + V P        L+   +  L             
Sbjct: 592  DQVVLSESGMVQTKKRQITFMIGSTDQVMPDQIENTALLTDQDRQRLLDNEGQVTPLLNE 651

Query: 673  ---NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA-SRWLQRLLVL------ 722
                   AE Y+   A      +    + +T  L          S +++R+         
Sbjct: 652  SSVGKMNAEPYLNYLAF----LSSQTTVYFTYPLGNGEGTAFKISPYVERIRNHFDLTIQ 707

Query: 723  --GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ----------------------------- 751
                     + +     +      L   ++Q                             
Sbjct: 708  KIAAEQSLQSTETPQGSWRSLLSDLIQVSRQAQENQTLIPEQWLTTYRLLQQAPQSQFLT 767

Query: 752  ------------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                        P    P+    L       S S++++   + YA + +  LKL   P F
Sbjct: 768  TQLFQSLNYRNEPERLTPEIVTGLYGNEIHTSISKLEEFYQNQYAYFLKYGLKLQERPVF 827

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINK---NTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
            +      + G  +H ++   IK    +        +  + +++     K    P   I+ 
Sbjct: 828  E--LTPANTGNFYHEVMDRFIKLIQGQQIALPELDDQQIDKLVSEVLAKTYEQPEFKILN 885

Query: 857  RHLFHKISHSFLEHEEKIQS----------SIEKIFVNIPAK-------------MAIES 893
            +          L    K  S          ++  +   +                M  + 
Sbjct: 886  KTARMGYIRQQLMQTVKRVSLALRNQSLSTNLRPLATEVLFGQVGAEKGLQGLNFMLDDH 945

Query: 894  IGIHLTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAAL---KA 946
              + + G  DRID L  +    + I DYK+  +      A   +  Q+      +   + 
Sbjct: 946  REVKVRGKIDRIDQLTINNQPYLGIVDYKSSQHSFNFRDAYYGLALQMLTYLETVLQDQQ 1005

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
                     K A  FY+ LK           KK
Sbjct: 1006 AILPANSAVKPAGAFYLHLKNPTLTLKQLTKKK 1038


>gi|229108698|ref|ZP_04238308.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock1-15]
 gi|228674728|gb|EEL29962.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock1-15]
          Length = 1166

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 121/1070 (11%), Positives = 282/1070 (26%), Gaps = 177/1070 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
            +E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 15   REVQEELKQCPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 74   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L+         Y   L+
Sbjct: 129  NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERALIGKYL-DSEDYLQLLV 187

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                +         I I G     P    ++  +        +   +D        N + 
Sbjct: 188  EKLPQSEYVN-GAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    + + L   
Sbjct: 247  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 292

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392
                      E +        + V +  A N R E   +A  +R  +       +  A++
Sbjct: 293  Y---------EARPNEKFNGEASVMISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 343

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 344  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403

Query: 452  HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497
              L       K  +    +  E   L               +  R               
Sbjct: 404  TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 463

Query: 498  --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
                      ++    P  + +   +     + + + +   +  L         +     
Sbjct: 464  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602
            +   L  +D  ++    +  +                   + S   + ++  +     + 
Sbjct: 524  SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +   +I    +        I  +  +     ++  +L+ +   + G         T +  
Sbjct: 584  VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643

Query: 663  FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683
               + +   +  + +E                                            
Sbjct: 644  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 704  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 757  KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  + ++                K    ++ L+ + I    +++ 
Sbjct: 817  IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 875  LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934

Query: 899  ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D    ++G  + I DYK +            +  Q+      + + +
Sbjct: 935  GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994

Query: 949  ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 +      A + Y  +      + I   K   S  E+ ++ LK   
Sbjct: 995  QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039


>gi|225870332|ref|YP_002746279.1| ATP-dependent exonuclease subunit B [Streptococcus equi subsp. equi
            4047]
 gi|225699736|emb|CAW93493.1| putative ATP-dependent exonuclease subunit B [Streptococcus equi
            subsp. equi 4047]
          Length = 1073

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 129/958 (13%), Positives = 263/958 (27%), Gaps = 137/958 (14%)

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
             E  L +             L ++   ++       DL  L   +         D + I 
Sbjct: 98   QEDELKVFHRLRTDQAFIAQLVELYKELQAANLTAFDLTTLDRPEKQE------DLITIM 151

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            +K   E+L+             L  A        +  +  ++I G T       +L++ +
Sbjct: 152  TKA--EQLIAQGDYDQSSRLAQLAEAIKSKSLDDELRQTVLVIDGFTRFSAEEEQLLALL 209

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                   ++      +I    +     K     +S        Q    K +         
Sbjct: 210  NEACEEIVIGA----YISQKAYRLAFTKGNLYEASLAFIQQLAQQFQTKPI--------- 256

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                  V +  + R   + ++       D + +   +          S V + +A N++E
Sbjct: 257  YTTSEKVFDVSFSRLTQLLEANHDYSKLDWQLSAKDK----------SKVVIWQALNQKE 306

Query: 370  EAISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
            E   +A A+R  L +  +      L+    +   ++     +F I   I    P+S    
Sbjct: 307  ELEHVAKAIREKLYQGYRYKDMLVLLGDVASYQLQIGPIFEKFEIPYYIGKQEPMSAHPL 366

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
               + SL            I  L+K  L      E  L + +  L    ++G        
Sbjct: 367  VQFVESLERGRRYNWRREDIVNLLKSGLFGRFQ-EGELDQLEQYLVFADIQGFTKFSRPF 425

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
             L S     +        +   +  +    ++L           +  L+T+         
Sbjct: 426  TLNSSRQYPL------PLLNQLRLAVVTPLQQLFKSQKQLGASLLDKLMTFFKTIQLADN 479

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              +++                  R+      EE  K  + +     +     K    + +
Sbjct: 480  FEALA---------------GSRRETDREKDEEVWKAFTGILETFYQVFGQEKMTLADCL 524

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             +I   +     +        + I         +   +   GL+   +PK T     +S 
Sbjct: 525  ALIKMGMQTAHYRTVPATLDVVSIKSYDLVEPHSKPFVFAIGLSRSHFPKQTKNTSLISD 584

Query: 667  VMQ----------SDLNLKTAE--KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
              +            L++ + E  K   Q A     A  T+ L+ +      N     S 
Sbjct: 585  QERASINEQTASYQRLDVPSFENIKKNHQTALSLFNA-ATQELVLSLPTSLTNSSDDVSP 643

Query: 715  WLQRLLVLGGTDFFDNL------------------------------------------- 731
            +L+ L+ LG                                                   
Sbjct: 644  YLKELIALGVPVIEKGKNRLSHSAADIGNYKALLSRLVAINRQGIADDMTSEDRNFWTVA 703

Query: 732  -----KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                 ++     L       + T +P             QP   S S +    N+ Y  +
Sbjct: 704  LRYLKRRLADEQLSLPAFEHHLTTKPVAPEVIETRFSSQQPLNLSSSALTVFYNNQYKYF 763

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS--HFE 844
             + +L L         PD    G   H I   + K R N    +        ++    F+
Sbjct: 764  LKYVLGLQEPESIH--PDARIHGQYLHRIFELVTKDRSNAAFDQKLGAAIAAVNQQSAFQ 821

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
            +             +   I++S       +   ++        ++A+    + + G  DR
Sbjct: 822  QVYQADAEGRYSLEVLKGIAYST-ASVLDLNQGLQITKQEEAFELAL-GQQVLIRGVIDR 879

Query: 905  IDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            ID L  G + I DYK+             + PQL    AALK         + +    Y+
Sbjct: 880  IDQLADGRLGIVDYKSSARVFDIVAFYNGLSPQLVTYLAALKNKG------QGLFGAMYL 933

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
             +++                D+L   + K L     +     + ++++      + + 
Sbjct: 934  HMQEPRLSLSDFK----ALDDQLVAAAYKELT-YKGIFLAQAKEYLANGSYHLNNTLY 986


>gi|229195441|ref|ZP_04322209.1| ATP-dependent nuclease, subunit B [Bacillus cereus m1293]
 gi|228587981|gb|EEK46031.1| ATP-dependent nuclease, subunit B [Bacillus cereus m1293]
          Length = 1166

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 107/977 (10%), Positives = 259/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 102  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 161

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           I I G     P    ++  
Sbjct: 162  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 219

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 220  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 270

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L             E +        + V +  A N R
Sbjct: 271  KTIPLMEQ-----PRFHSPALAHLEAHY---------EARPNEKFNGEASVTIHTAANLR 316

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   D   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 317  AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 377  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 436

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   ++    P  + +   +     + 
Sbjct: 437  RWTSEDPWMYRRYRSLDDTDGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 497  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 556

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 557  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 616

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 617  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 676

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 677  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 730  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 789

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 790  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 847

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 848  ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 907

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 908  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 967

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 968  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1022

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1023 GDASEAEIEKEILKKFK 1039


>gi|77410684|ref|ZP_00787043.1| exonuclease RexB [Streptococcus agalactiae CJB111]
 gi|77163220|gb|EAO74172.1| exonuclease RexB [Streptococcus agalactiae CJB111]
          Length = 808

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 97/740 (13%), Positives = 206/740 (27%), Gaps = 107/740 (14%)

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRF 409
                  + + E  N+++E   +A A+R  L +  +     ++  D +  +        ++
Sbjct: 21   DTAKDCITIWECINQKDEVEHVARAIRQKLYQGYRYKDILVLLGDVDSYKLQLSKIFEQY 80

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAK 468
             I         ++       + SL            +  L K     +    +     A 
Sbjct: 81   DIPYYFGKAETMAAHPLVHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQDDLDYFEAY 140

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
             +   +       +  ++  K   L R+ T + +   P      +++             
Sbjct: 141  ISYADIKGPKKFFTDFVVGAKKFDLGRLNTIRQSLLTPLESFVKTKKQDG---------- 190

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
              I  L  +         + ++S          Q               +E  KT + + 
Sbjct: 191  --IKTLNQFMFFLTQVGLSDNLSRLVGQMSENEQEK------------HQEVWKTFTDIL 236

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
             +        K N  E++ ++   +     +        + +         +   +   G
Sbjct: 237  EQFQTIFGQEKLNLDEFLSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALG 296

Query: 649  LNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMA----NGTRHL 697
            + +  +PK       +S + +                       + F          + L
Sbjct: 297  MTQSHFPKIAQNKSLISDIERQLINDANDTDGHFDIMTQENLKKNHFAALSLFNAAKQEL 356

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGT-------------------------------- 725
            + T     N      S +L  L  +G                                  
Sbjct: 357  VLTIPQLLNESEDQMSPYLVELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRS 416

Query: 726  DFFDNLKKRGQC-YLDWTRKLDYTTKQPHYKRP---------------KPFPPLEAQPRT 769
                 + K  Q  +    R L         + P                     E  P  
Sbjct: 417  AIDKEMTKEEQTFWSVAVRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDDPLK 476

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S S +    N+ Y  + + +L L+        PD    GT  H +   L+K +  ++  
Sbjct: 477  LSSSALTTFYNNQYKYFLQYVLGLEEQDSIH--PDMRHHGTYLHRVFEILMKNQGIESFE 534

Query: 830  EINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
            E  +        +  F+              +   I+ +      +  S +         
Sbjct: 535  EKLNSAINKTNQEDVFKSLYSEDAESRYSLEILEDIARATATILRQD-SQMTVESEEERF 593

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEA-AA 943
            ++ I+   I + G  DRID L  G + + DYK+    +K   QK    + PQL     A 
Sbjct: 594  ELMID-NTIKINGIIDRIDRLSDGSLGVVDYKSSA--QKFDIQKFYNGLSPQLVTYIDAI 650

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
             +     Q     +    Y+ +      +   +  K  + D+L  K+ + L     L   
Sbjct: 651  SRDKEVEQKPP--IFGAMYLHM-----QEPRQDLSKIKNLDDLVTKNHQALT-YKGLFSE 702

Query: 1004 GEQPFISHLRLSEKSNIQSE 1023
             E+ F+++ +   K ++ SE
Sbjct: 703  AEKEFLANGKYHLKDSLYSE 722


>gi|254457248|ref|ZP_05070676.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
 gi|207086040|gb|EDZ63324.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
          Length = 783

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/385 (18%), Positives = 148/385 (38%), Gaps = 31/385 (8%)

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
           + +    I +  + +   T+     +   + ++G LE+R ++FD +++   N+G  P+ +
Sbjct: 386 EMSVKSLISLFLQRLASATI--DDVRGGKVTVMGVLETRAIDFDAVVIVDFNDGNVPRRS 443

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQ 717
            K+ FL+  ++   NL T         H +EM    ++ +  +    + +    ASR+L+
Sbjct: 444 DKDMFLNTNIREMANLPTMSDRENLQKHYYEMLINSSKEVAISFVESQQSS---ASRFLK 500

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            L +    +  +         LD+   L   +     +  K       +    S +++K 
Sbjct: 501 HLGIKAKNEHEE---------LDYAGVLFDKSAPALKEEKKIAMEYSFKDVKLSATKLKT 551

Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-KNTPEINHLMK 836
            +      Y + I  ++     K  P   + GT  H  + EL  KR +  +  ++   + 
Sbjct: 552 FLTCKRKYYHKYIEHINSHEIPKDMPAEYEVGTAVHEALKELYTKRNSYLSVDDLKRDLN 611

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
             +D       L  ++  + +        +F E E +  +   ++       ++ +  G+
Sbjct: 612 NELDDVCGASELDKYLIEMQKRRL----DTFCEKEVERFADGWQVK-ECEKSLSCDFAGM 666

Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
            L+G  DR+D+ K G + + DYKTG  P    +T     D QL                 
Sbjct: 667 QLSGVIDRVDV-KDGDMFVLDYKTGSYPLYTAKTFPDATDFQLEFYYLLAS-------TL 718

Query: 955 RKVANLFYIRLKQKFKIDCITNDKK 979
            KV+   Y  LK    +     ++K
Sbjct: 719 GKVSACGYYDLKDSKIVPESFLEEK 743


>gi|52144190|ref|YP_082639.1| ATP-dependent nuclease, subunit B [Bacillus cereus E33L]
 gi|81689029|sp|Q63EM3|ADDB_BACCZ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|51977659|gb|AAU19209.1| ATP-dependent nuclease, subunit B [Bacillus cereus E33L]
          Length = 1171

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 106/977 (10%), Positives = 252/977 (25%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           I I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEKHYEARPNEKFHGE---------ASVTIRTAANLR 321

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   D   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483
                 + S L  I     + A+   VK  L       K  +    +  E   L       
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 484  DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522
                    +  R                         ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +  +   T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQILYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|262282992|ref|ZP_06060759.1| ATP-dependent exonuclease RexB [Streptococcus sp. 2_1_36FAA]
 gi|262261244|gb|EEY79943.1| ATP-dependent exonuclease RexB [Streptococcus sp. 2_1_36FAA]
          Length = 1093

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 115/923 (12%), Positives = 260/923 (28%), Gaps = 137/923 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L          L + +  S
Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVATALNKGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       + E   +     ++I G T        L+  +     G  ++ G   +
Sbjct: 166 SSQIATFAQHILSGETDEELVDLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +             ++
Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYIPHAEAEDAFGRISNI 273

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
           + S+      T  +  TD               + +    N++EE   +A ++R  + + 
Sbjct: 274 LESRYDFSESTVSLSETDRSR------------LQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       GN    ++   +  +          
Sbjct: 382 LEDLLNLLKTGL----------------------YGNLTQEELDHFEQYLRFADIKGAGK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561
                  +   + D +    +   ++  +      ++   +      +           L
Sbjct: 420 LAKDFTANSQGKFDLDSLNHIRRRVMTPLQDFFKSRSQTASWLLAKFTEFVQAARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +   E ++      EE  K  S +  +  +  +  K    +++ ++   +     +  
Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN +T  +  
Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNEETDSQAE 598

Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRL----------- 719
            Q A         +         T+ L+ +     N +    S +L  L           
Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658

Query: 720 -------------LVLGGTDFFDNLKKRGQCYLD--------WTRKLDYTTKQPHYKRPK 758
                          L       N ++  + +            R L           P+
Sbjct: 659 KKSQASSDDIGSYRALLSQIIELNQEEIDREWTAEEKTFWAVAVRVLRKKLAVEGISIPQ 718

Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               + QP   S S + +   + Y  + + IL L     +   P
Sbjct: 719 ISKELKTESLQPETLQALYPKDQPLRLSASALNEYFKNQYGYFIKYILGLQ--EEWTIHP 776

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINH-LMKQIIDS-HFEKENLPPHIDIIWRHLFH 861
           D    G   H I  +++++  +++  +     + + +    FE         +  R L  
Sbjct: 777 DARSHGNFLHRIFEKVLQEDTSRDFDQRLEVAIDETMRETEFESLYNESSESLFTRQLLL 836

Query: 862 KISHSFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDL-LKSGFV 913
             + S  +   +  + IE I           P  +  +   + + G  DRID  L  G +
Sbjct: 837 DTAKSTGQVLAQS-AGIETIGEETVFGNSKEPFLILEDGRAVSVRGKVDRIDRLLADGSL 895

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+ +     E     ++ QL    AA++     Q + R +    Y+++ +     
Sbjct: 896 GVVDYKSSETKFSYEKFFNGLNSQLPTYLAAIQELQGQQ-EGRDLFGAMYLQMTE----- 949

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
            I   K      +  ++  K + 
Sbjct: 950 PIVALKDTKELGDAVKEVAKTMQ 972


>gi|74316052|ref|YP_313792.1| DNA helicase/exodeoxyribonuclease V subunit B [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055547|gb|AAZ95987.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 836

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 123/831 (14%), Positives = 234/831 (28%), Gaps = 65/831 (7%)

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
              +  A+ LA           +   L A             A  L             L
Sbjct: 7   RAGLDFARALAREAGRAALVAPQITPLKAWAERFAEAAAEPQARRLARLHAALR-HSDWL 65

Query: 203 NASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
            +         L+R      A      T  P++      S      L+  V         
Sbjct: 66  GSVDKWALANELLRLIDELSAARAPGATGQPVLDLPPDVSPEREVALIEAVWRT------ 119

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
           L              +   + ++T +      +    L+        +  D   L     
Sbjct: 120 LNAGGDDPQARYAAALDALAADLTRAPRPIFGYALGPLSGGEQAFLARCADHAPLTLYEG 179

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
           +      +  +         ++                  + +  A +   EA ++A  +
Sbjct: 180 DADDPVALTLRQAWLATEPPLQARATALATRFADSPVVEQITVAPAPHLEAEARAVASWV 239

Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              L   ++  ALI  DR  ARRV+  L R  + +    G  LSTT+ ++++   L  + 
Sbjct: 240 AAQLRAGRQALALIALDRETARRVRALLERLDVLVADETGWALSTTVAAAVVDRWLECVA 299

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                + +  L+K P       +    + +     +ALR  + +    D++ +       
Sbjct: 300 SDFPHVELLDLLKSPFV---LDDPAARQDQVLQLELALRRQRVAQGAADIERVARQEFGA 356

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                       +          L +  +   +  L      +    G    +   +   
Sbjct: 357 LPAWLASLFDARQRFARTSAPLALWLQRLADSLDQLAARAPLEADAAG----ARVLETLA 412

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              +++  D  +   N W    G  L                                  
Sbjct: 413 ALGRDLAQDSEKYDFNEWRRWLGLAL------------------------------ESAS 442

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                  S + +     +R  +FD + + G +    P       F S+  +  L L+T+ 
Sbjct: 443 FVDAGVDSPIVLTSLPAARGRSFDAIAVIGADARHLPALPTPGLF-SQATRRQLGLRTSA 501

Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                A  D     G    + +     ++ P  AS  + RL  L    +   L ++G   
Sbjct: 502 DDAADAVTDLIALLGQGPALLSWRAWNDDEPNPASPLVLRLQALHLAAWSSALPEQGIGE 561

Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                    +T      RP P  P    PR YS +  + L++ PY  +AR +L +  +  
Sbjct: 562 PPA----RASTLPGRCTRPAPVVPAARLPRRYSPTAYQTLLDCPYHFFARAVLGIRELDE 617

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI--DIIW 856
                D++D G   H I+          +  +   L+    ++ F              W
Sbjct: 618 ADDALDKSDYGNALHRILKRFHDGDPPHDPAQALALLDACAEAEFAALPAYTAAAWRSKW 677

Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFV 913
             +      ++LE                   +A+       + L G  DR+D      +
Sbjct: 678 SAIAPAYVDAWLEW---AGEGWRHASSESEFAVAVAVAGLGEVTLHGRVDRVDRRGD-AL 733

Query: 914 DITDYKTGDNPKKETAQK--LIDPQLSLEAAAL-KAGSFSQIDCRKVANLF 961
            + DYKTG     +   +      QL   A       ++  I+   VA L 
Sbjct: 734 AVIDYKTGSAQGLKKKLRMPDEAVQLPFYAWLCNARAAYLPINEAPVAPLE 784


>gi|312279029|gb|ADQ63686.1| ATP-dependent helicase/deoxyribonuclease subunit B [Streptococcus
           thermophilus ND03]
          Length = 1106

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 119/934 (12%), Positives = 256/934 (27%), Gaps = 134/934 (14%)

Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
              +  L +             L D+   ++       DL  L         +   + L 
Sbjct: 96  HMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQ-------VEKQEDLV 148

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMST 248
                  + L+  +  +            + HL +     + +I G T        L++ 
Sbjct: 149 RIFSAAQDLLLAGDFDNQSKLSAFFKEITSGHLDEALSNTVLVIDGFTRFSAEEEALVAL 208

Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
           + +  +  +V          A +        ++              L  L     +  +
Sbjct: 209 LNDKCHQIVVGTYTSQKAYKANFVYGNVYQASVDF------------LRTLAQTYKVIPD 256

Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
            V       N  + R   + +S     T D   T+  ++           + + E  N++
Sbjct: 257 YVTT-DKEGNLSFARISRLLESRHDFSTVDETVTEQDKH----------ALKVWEVVNQK 305

Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKL---ELTRFGINIDISAGIPLSTTL 425
           EE   +A ++R  L + K+   ++    +             +F I         +S+  
Sbjct: 306 EEVAQVAKSIRQLLADGKRYKDILVLLGDEESYKLHVGQIFRKFDIPYYFGKEESMSSHP 365

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
               + SL            +  LVK  L      E                 +K   D 
Sbjct: 366 LVEFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDLFEYYVNFADIKGRHKFLSDF 425

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
                   +        + +     +     K+    L+  ++  +  +    +      
Sbjct: 426 TANSRDKYNLDQINALRSQLIEPLDKFLNSRKQKGSSLLKKLVVFLEAV-QLPSQMFELS 484

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
              S ++                         E+  K  + +  ++            ++
Sbjct: 485 TKASEAE---------------------KEQNEQVWKAFTHILEQVETIFGDESLLVDDF 523

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
           + I+   +     +        + +      +  +   +   G+ +  +PK       LS
Sbjct: 524 LSILRSGMLACDYRTVPVTVDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKSLLS 583

Query: 666 RVMQSDLNLKTAEKYIGQ--------AAHDFEMAN---GTRHLIYTRSLRENNIPTIASR 714
              +S +N  T E               H   M+     +  L+ ++    N      S 
Sbjct: 584 DEERSRINEATDEHRRLDIVTQINSKRGHFVAMSLFNAASEQLVLSQPQIINESQDDMSV 643

Query: 715 WLQRLLVLGGTDFFDNL---------------------------------------KKRG 735
           +L+ LL LG                                                   
Sbjct: 644 YLKELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVA 703

Query: 736 QCYLD---------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
             YL            + +D  T      +       E +P   S + +    N+ Y  +
Sbjct: 704 VRYLRKRLDKDQVLIPKVIDDVTTTKVDDQVMQLVFPEEEPLKLSATALTTFYNNQYLYF 763

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844
            R +L+L+ +      PD    GT  H +   ++    +++  +           D  FE
Sbjct: 764 LRYVLELEELESIH--PDARHHGTYLHRVFERVMGDSSSESFDDKLEKAIAQTNQDQPFE 821

Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                       R +   I+ S         + ++     +   + +    I +TG  DR
Sbjct: 822 ILYTEDQESRFSRQILEDIARSTASVLRDNAA-VKVEREEVKFDLLLA-NSIKITGIIDR 879

Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
           +D L  G + + DYKTG N      QK    + PQL     AL+     ++D  ++    
Sbjct: 880 VDRLTDGALGVVDYKTGKN--VFDIQKFYNGLSPQLVTYLEALRQT--YKVDADQLFGAM 935

Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
           Y+ +           +  +   ++L+ ++ K L 
Sbjct: 936 YLHM------QVPQLNLAQIGLEKLAAQAHKELT 963


>gi|86153163|ref|ZP_01071368.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
            HB93-13]
 gi|121613506|ref|YP_001001131.1| hypothetical protein CJJ81176_1475 [Campylobacter jejuni subsp.
            jejuni 81-176]
 gi|167006024|ref|ZP_02271782.1| hypothetical protein Cjejjejuni_07785 [Campylobacter jejuni subsp.
            jejuni 81-176]
 gi|85844048|gb|EAQ61258.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
            HB93-13]
 gi|87249581|gb|EAQ72540.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
            81-176]
          Length = 788

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 86/457 (18%), Positives = 145/457 (31%), Gaps = 59/457 (12%)

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +E    +      I +          E I +    I   ++         + ++G LE
Sbjct: 376  EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694
            SR L FD +IL   NE   PK +    FL+  ++    L + ++        +E      
Sbjct: 434  SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
              +       E       SR+L  L      DFF       + YL+  +      K    
Sbjct: 494  LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                P           SFS    L N     Y R IL L       ++    ++G   H 
Sbjct: 547  PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            ++    K   N +         ++  +  +KE    +I  +   +F      F ++E++ 
Sbjct: 607  MLEIYYKNYANNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660

Query: 875  QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
             S         +     + + +  I L G  DRID  K G + I DYK+G  P       
Sbjct: 661  FSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714

Query: 932  LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                QL+   A         F  ++  ++                    +K  S DEL  
Sbjct: 715  --SYQLAFYQALYDENASVGFYDLNSMQI------------------LHQKAKSLDEL-- 752

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
               + L ++V L+   E  F        + +    Y 
Sbjct: 753  --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 780


>gi|163939034|ref|YP_001643918.1| ATP-dependent nuclease subunit AddB [Bacillus weihenstephanensis
            KBAB4]
 gi|251764543|sp|A9VJ01|ADDB_BACWK RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|163861231|gb|ABY42290.1| ATP-dependent nuclease subunit AddB [Bacillus weihenstephanensis
            KBAB4]
          Length = 1171

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 104/947 (10%), Positives = 239/947 (25%), Gaps = 151/947 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDTHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L+         Y   L+   ++         I I G     P    ++  
Sbjct: 167  QLLYDDFERALIGKYL-DSEDYLQLLIEKLSDS-EYVKGAEIYIDGFHSFSPQELEIVRG 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +            + ++     I+ E
Sbjct: 225  LMRLGTRVTITLTIDEKTLAQPVNELDLFYETTLTYE---------RIKQVAREEKIEVE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 276  KTIPL-----MKQPRFHSQALAHLEMHYEARPNEKFHGE---------ASVTISTAANLR 321

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   D   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVATEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                 + S L  I     + A+   VK  L       K       +  E   L       
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGK 441

Query: 484  DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522
                    +  R                         ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDASEMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK---------ANAIEWIDIITRLIDGETVKPKIEK--- 624
                   + +   + ++  +             +     DI    I G            
Sbjct: 562  SLSMFTDVMTTGLEALQFANIPPSLDQVLVANIDHSRLSDIKATFIIGVNEGVIPAAPMD 621

Query: 625  -------------SSTLFILGTLESRLLNFDTLI---LGGLNEGVWPKNTAKN----PFL 664
                         ++ + +  T    LL    ++   +   +E ++      +      L
Sbjct: 622  EGMLSDEERNVLTAAGIELAPTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLL 681

Query: 665  SRVMQSDLNLKTAE--------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
            +      +     +             +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKESFITNDVNDLSRSEQLSYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTDVSRDLYGDTIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------I 820
            S S ++      YA +A+  L L     F    D  D G LFH  +  +           
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADKLLRENRTW 852

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                 K    ++ L+ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSALVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRIDLLKSGF---VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D  +      + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965
                       +  Q+      + + +     +      A + Y  +
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGSTASPAGVLYFHI 1019


>gi|118443563|ref|YP_877318.1| ATP-dependent deoxyribonuclease subunit B [Clostridium novyi NT]
 gi|251764559|sp|A0PY66|ADDB_CLONN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|118134019|gb|ABK61063.1| ATP-dependent deoxyribonuclease subunit B [Clostridium novyi NT]
          Length = 1134

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 117/952 (12%), Positives = 256/952 (26%), Gaps = 143/952 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
            L +  + AN      N++DII  ++  +    +L A  N     +     + +    + +
Sbjct: 106  LKVFATAANQEGFVNNISDIITELKRYDVTATELRATLNLIEDEFLKDKINDISYIFEQF 165

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             E L   N          L R + +         + I   +   P   +++  +    + 
Sbjct: 166  QESL-HKNYIDSEDELTLLYR-KIDTSKMFDGAEVWIDEFSSFTPQQYKILEKLMEKASR 223

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
              +   +D +      +                         KL   + +  +DV R  +
Sbjct: 224  VNITLCMDYYRVIDGTDVFAPTKRTEEKLREILKE----KDVKLDKPIILNNDDVNRFKD 279

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
             S   Y         + P D +                    D+ +I A N   E  +IA
Sbjct: 280  SSELKYLEENYFKYPYKPYDKT------------------TDDIKIIRALNPYSEVENIA 321

Query: 376  IALRM---SLDENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILT 431
              +       +   +  A+IT D     ++       + I   I     +       ++T
Sbjct: 322  KEIAKISMESNIRYRDIAVITRDLEGYEKIVKTIFDEYEIPYFIDKKKEIDDNPLIVLIT 381

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            S++    K   + A+   +K  L+     E  L         +  +    S      +++
Sbjct: 382  SVIEIFNKSWSYEAMFRYLKTGLSNVSKEEVDLLENYVLAYGIRGKKKWQSPWEYGNENI 441

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            +      +   +      S   +   + A  +   +   +  +   +T +       +  
Sbjct: 442  LEKINEIRIKVSEPLIKFSSKLKGKSK-ADEICSAVYNFLCSIGVNETIEKWVYKFKN-- 498

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                            E  +     + +    +  L  +++E     +    +++ I++ 
Sbjct: 499  ----------------EGNQALAKEYSQIWNMVIELLDQVVEVFKEEELQLKDFVKILSL 542

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
                  +         + +      R      L + G+N+G++P  +     LS   +  
Sbjct: 543  GFKDYKMGLIPPSLDQVLVSDVERVRTHEIKLLYIIGVNDGIFPAVSKDEGILSDSDRGS 602

Query: 672  L---NLKTAEKY----IGQAAHDFEMANG-------------------TRHLIYTRSLRE 705
            L    ++ AE        +    +                           +I +R    
Sbjct: 603  LKKIGIEIAEDTKSKAFEEQYLIYRTLTTTQKYLRICYSIADYEGKALRPSIIVSRFKSL 662

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                   S  +         D            +   R+ D   K   +         E 
Sbjct: 663  FPKIAEESDNIAMDYEEENIDLISREIPTFNNLVSVLRREDNKVKVSPFWSDVYKWYSEN 722

Query: 766  QPRT---------------------------------YSFSEIKQLINDPYAVYARRILK 792
                                                  + S +++    P+  Y +  LK
Sbjct: 723  PRWKETLDTVFSAISYTNAVDDISEEKIRKMYGNKLYLTVSRLEKYAQCPFGYYIKYGLK 782

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSH 842
                  F       D GT  HN+I E             +  +K   +    +       
Sbjct: 783  AKERKIF--ALTPPDLGTFMHNVIDEFSEVVDKSGFKWYEIEDKWCKDTVSEIVDRKAEE 840

Query: 843  FEKENLPPHIDIIWR-HLFHKISHSFLEH--EEKIQSSIEKIFVNIPA---------KMA 890
                         +      ++    +    E   +S  + I   +           ++ 
Sbjct: 841  SAGGIFTSSARYKYFTERLKRVLIKTILVIIEHLKRSGFQPIGHEVGFGNDEKYPPIEIE 900

Query: 891  IESIG-IHLTGFADRIDLL----KSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEA-AA 943
            + S   + L G  DR+D L    K  +  I DYK+G  +         +  QL     A 
Sbjct: 901  LSSGEKVKLIGRIDRVDKLDMEKKD-YYRIIDYKSGNKDFSLSDVYYGLQLQLLTYLDAI 959

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            L        +      + Y+++      D I   K+  S +E+ ++ +K L 
Sbjct: 960  LTNEELKDREEALPGGVLYLKID-----DPIIKGKRNLSEEEIQDEIMKALK 1006


>gi|213965910|ref|ZP_03394101.1| helicase, uvrd/rep family [Corynebacterium amycolatum SK46]
 gi|213951488|gb|EEB62879.1| helicase, uvrd/rep family [Corynebacterium amycolatum SK46]
          Length = 1119

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 126/1046 (12%), Positives = 285/1046 (27%), Gaps = 130/1046 (12%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITG--------KKSTILPIIKSLGDVVEEKFTADLLLSY 97
            S+ +   +K A  ELR +                +    +++++  +         +   
Sbjct: 83   SILVVSQSKEAAAELRRDIDRRFACEVGEGGSVGAGQGGMVRAVHSLAYAVVRDAAVSRG 142

Query: 98   NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID 157
               P ++        AR   + R  L    +D     P          +  ++ + D + 
Sbjct: 143  EPEPSLT------TGARQDAVVRQLLAGHAEDGGAYWPER-LRPALPLVGFSRAVRDFLL 195

Query: 158  IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT-ERLVELNASSPVGYQIALMR 216
                       L  L  +     W  A  F+    +         LNA+  V   +  + 
Sbjct: 196  RAAERGIDAPRLQQLGVDYGIESWCAAGKFMAEYQQTMRLAWEPSLNAAEIVSAALMELD 255

Query: 217  AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
            A+A+ L +  K  +++  +    P  ARL+    +    A++    D       +     
Sbjct: 256  ADAQALARWGKSVVLVDDAEHLSPEAARLVDRFVSQAAVAVIT--GDEDQSVFHFRGANN 313

Query: 277  KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
                 T      + H Q S     D  D+     +RL            +          
Sbjct: 314  DYLRGTGKAEYKAIHLQQSYRCNADIADLANAVSQRLPKA----PAYRGIAGSVGTQEAR 369

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALIT 393
                 ++       +     S V +    +ER +  ++A   R    +     K  A+I 
Sbjct: 370  ESEVGSNSETAAAEDSYAAKSAVKIAIHPSERAQRATVADYFRRLHIDEGVAWKDMAVIV 429

Query: 394  ADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                    +   L+R G+ + I    I LS       L   L A     D +     +  
Sbjct: 430  RSGAGESSLFRALSRAGVPVQIDPTDIVLSHQRLVRALMVALRATMNQLDDVEWDEFLSG 489

Query: 453  PLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            PL       ++ L R     +L           I+    L  +++   ++ +       +
Sbjct: 490  PLVNMDPIVKERLLRGIRKADLFGGAAMTQLIGILKADGLATEQLELIESLSQRERQALQ 549

Query: 512  LSEEDKELAVLLVDHILQC-------------------ITPLVTYKTNKNSTCGNLSISD 552
            +  +    A   +   ++                    +       +        +++ D
Sbjct: 550  VPLDLLSAAREALRDGVEATLWAIWQSTGLADHLVAASLRGGTAGASADRDLDAVMALFD 609

Query: 553  WT----------------------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +                       +L +       ++             G+   ++   
Sbjct: 610  FAGDRVELNPKLTVDGFIASVEEQELPIGARDRSGVERDAVRILSAHAALGRQWKAVAVV 669

Query: 591  IIETG-------SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
             ++ G       +       E+I ++   I+       +  +          +     D 
Sbjct: 670  GVQEGQWPSLGVTGSVMKQNEFIGLVDHGIEPREYINSMADALAEERRLLHVAVSRASDR 729

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG---------- 693
            ++L  ++        +           +   + A++    +A +   A            
Sbjct: 730  VLLTAVDSPDDVGVPSPFIIELVEKLGNSATELAKQSEASSAANGVGATANEANVGKPDV 789

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR-GQCYLDWTRKLDYTTKQP 752
                    +             L  L      D     ++R     L    +++     P
Sbjct: 790  AEAEDVAWAGEGLPRVLSVESLLAELRAAVVDDAETETRRRQAARQLARLAQVEVAGAHP 849

Query: 753  -----HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                         P  + +P   + S+++  +N P      +                  
Sbjct: 850  DTWWGLRAPSTSKPVNDKKPMRINPSKVEATLNCPLKAMLDK----------SAPTSAMY 899

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
             G+L H  +  + K              +  I   F   +  P     WR    +   ++
Sbjct: 900  LGSLLHQAVEAVAKGVTVP-------EAQSEIRRVFGDLSDDPE----WRKRTEE--ETW 946

Query: 868  LE--HEEKIQSSIEK-IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-N 923
            L    + +     +K I   +P K+ I    I + G  DR+     G V I D KTG   
Sbjct: 947  LTGLEDWQRWIETKKDIGTEVPVKVNIND-DIVIVGRIDRLIEDADGAVQIVDIKTGKTA 1005

Query: 924  PKKETAQKLIDPQLSLEAAALKAG---------SFSQIDCRKVANLFYIRLKQKFKIDCI 974
            P  +  +     QL+    AL  G         + +  +  + +  + +  ++      I
Sbjct: 1006 PSGKEVEGHA--QLATYQLALSKGKLVESGDGLAVNNGEGIEQSGAYLVFPRKSHNKTII 1063

Query: 975  TNDKKKYSADELSEKSLKNLIEIVTL 1000
            T+ ++    ++      + + ++   
Sbjct: 1064 TSREQSKLTEDKLADWERRVEQVARA 1089


>gi|228919961|ref|ZP_04083315.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
 gi|228964185|ref|ZP_04125308.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            sotto str. T04001]
 gi|228795535|gb|EEM43019.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            sotto str. T04001]
 gi|228839674|gb|EEM84961.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
          Length = 1171

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 107/977 (10%), Positives = 252/977 (25%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           I I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTIDEKTLAQPVNELDLFYETTVTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N    +          + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEAHYEARPNEKFNDE---------ASVTISTAANLR 321

Query: 369  EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  + +     +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRKLVADEKYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483
                 + S L  I     + A+   VK  L       K  +    +  E   L       
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 484  DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522
                    +  R                         ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEELRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGDEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   + G         T +     + +   +  + +E                 
Sbjct: 622  EGMLSDEEREVLGAAGIELAPTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLL 681

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------I 820
            S S ++      YA +A+  L L     F    D  D G LFH  + ++           
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKKIADKLLRENRTW 852

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                 K    ++ L+ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSVLVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHTASPAGVLYFHI-----HNPIVEMK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|153951609|ref|YP_001398783.1| hypothetical protein JJD26997_1829 [Campylobacter jejuni subsp.
            doylei 269.97]
 gi|152939055|gb|ABS43796.1| conserved hypothetical protein [Campylobacter jejuni subsp. doylei
            269.97]
          Length = 788

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 86/457 (18%), Positives = 144/457 (31%), Gaps = 59/457 (12%)

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +E    +      I +          E I +    I   ++         + ++G LE
Sbjct: 376  EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-T 694
            SR L FD +IL   NE   PK +    FL+  ++    L + ++        +E      
Sbjct: 434  SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMNNA 493

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
              +       E       SR+L  L      DFF       + YL+  +      K    
Sbjct: 494  LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                P           SFS    L N     Y R IL L       ++    ++G   H 
Sbjct: 547  PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            ++    K   N +         +   +  +KE    +I  +   +F      F ++E++ 
Sbjct: 607  MLEIYYKNYANNDFD------IRNFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660

Query: 875  QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
             S         +     + + +  I L G  DRID  K G + I DYK+G  P       
Sbjct: 661  FSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714

Query: 932  LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                QL+   A         F  ++  ++                    +K  S DEL  
Sbjct: 715  --SYQLAFYQALYDENASVGFYDLNSMQI------------------LHQKAKSLDEL-- 752

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
               + L ++V L+   E  F        + +    Y 
Sbjct: 753  --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 780


>gi|229137927|ref|ZP_04266526.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST26]
 gi|228645584|gb|EEL01817.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST26]
          Length = 1166

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 102  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 161

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           I I G     P    ++  
Sbjct: 162  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 219

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 220  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 270

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L             E +        + V +  A N R
Sbjct: 271  KTIPLMEQ-----PRFHSPALAHLEAHY---------EARPNEKFNGEASVTIHTAANLR 316

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   +   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 317  AEVEGVAREIRRLVADENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 377  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 436

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   +     P  + +   +     + 
Sbjct: 437  RWTSEDPWMYRRYRSLDDTDGMITDSEREMEEKINRLRGVVRTPVIRMQKRLKRAGTVMQ 496

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 497  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 556

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 557  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 616

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 617  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 676

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 677  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 730  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 789

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 790  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 847

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 848  ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 907

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 908  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 967

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 968  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1022

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1023 GDASEAEIEKEILKKFK 1039


>gi|229022698|ref|ZP_04179222.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1272]
 gi|228738510|gb|EEL88982.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1272]
          Length = 1166

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 105/947 (11%), Positives = 241/947 (25%), Gaps = 151/947 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 102  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 161

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L+         Y   L+   ++         I I G     P    ++  
Sbjct: 162  QLLYDDFERALIGKYL-DSEDYLQLLIEKLSDS-EYVKGAEIYIDGFHSFSPQELEIVRG 219

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +            + ++     I+ E
Sbjct: 220  LMKLGTRVTITLTIDEKTLAQPVNELDLFYETTLTYE---------RIKQVAREEKIEIE 270

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 271  KTIPLMEQ-----PRFHSQALAHLETHYEARPNEKFHGE---------ASVTISTAANLR 316

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   D   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 317  AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                 + S L  I     + A+   VK  L       K       +  E   L       
Sbjct: 377  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGK 436

Query: 484  DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522
                    +  R                         ++    P  + +   +     + 
Sbjct: 437  RWTSEDPWMYRRYRSLDDASEMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +         L  +D  ++    +  +            
Sbjct: 497  MCEAVYLFLEELDVPKKLEELRVRAEENGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKM 556

Query: 577  FEEEGKTLSSLFSKIIETGSCIK---------ANAIEWIDIITRLIDGETVKPKIEK--- 624
                   + S   + ++  +             +     DI    I G            
Sbjct: 557  SLSMFTEVMSTGLEALQFANIPPSLDQVLVANIDHSRLSDIKATFIIGVNEGVIPAAPMD 616

Query: 625  -------------SSTLFILGTLESRLLNFDTLI---LGGLNEGVWPKNTAKN----PFL 664
                         ++ + +  T    LL    ++   +   +E ++      +      L
Sbjct: 617  EGMLSDEERNVLTAAGIELAPTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLL 676

Query: 665  SRVMQSDLNLKTAE--------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
            +      +     +             +  +      T  +  +  +++           
Sbjct: 677  ASSFIKKIKRMFPDVKESFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 730  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDTIKG 789

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 790  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 847

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ L+ + I    +++ L       +      +I    S +  E    S 
Sbjct: 848  ADLSIKECEHLSTLVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSG 907

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRIDLLKSGF---VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D  +      + I DYK + 
Sbjct: 908  FVPVDLEVPFGMGGTGSLPPMEFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSS 967

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965
                       +  Q+      + + +     +      A + Y  +
Sbjct: 968  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI 1014


>gi|206976601|ref|ZP_03237507.1| ATP-dependent nuclease, subunit B [Bacillus cereus H3081.97]
 gi|217958718|ref|YP_002337266.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH187]
 gi|222094862|ref|YP_002528922.1| ATP-dependent nuclease, subunit b [Bacillus cereus Q1]
 gi|251764582|sp|B7HZR4|ADDB_BACC7 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|251764584|sp|B9ITE8|ADDB_BACCQ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|206745284|gb|EDZ56685.1| ATP-dependent nuclease, subunit B [Bacillus cereus H3081.97]
 gi|217064274|gb|ACJ78524.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH187]
 gi|221238920|gb|ACM11630.1| ATP-dependent nuclease, subunit B [Bacillus cereus Q1]
          Length = 1171

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           I I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L             E +        + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLEAHY---------EARPNEKFNGEASVTIHTAANLR 321

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   +   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVADENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   +     P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTDGMITDSEREMEEKINRLRGVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|269468140|gb|EEZ79847.1| hypothetical protein Sup05_0661 [uncultured SUP05 cluster bacterium]
          Length = 826

 Score =  165 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 99/693 (14%), Positives = 215/693 (31%), Gaps = 94/693 (13%)

Query: 366  NEREEAISIAIALRMSLDENKKKSALITA--DRNLARRVKLELTR---------FGINID 414
               +E  S A   +     N  K  +I +     L  R K    +            + +
Sbjct: 198  TTEDEIKSAAEWAKELHASNPSKQIVIVSPKLNELHYRFKSIFDQVFFNTLNETGKKSYN 257

Query: 415  ISAGIPLSTTLHSSILTSLLNA----IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            IS G+PL        L S+L                  ++  P       E+        
Sbjct: 258  ISLGLPLDKYPLIQHLLSILELSNQLQKNRIKATTFNAVITSPYIVSAQNEQSARAL--- 314

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                                     +  +  +    +++    ++      +L   +   
Sbjct: 315  -------------------------LVNKVLSLSKTNFKLWEVKDSLSNCPILEQTLRVI 349

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                              S   W       LQ+      R L +  ++   K   +    
Sbjct: 350  SDG---------QISHQQSHDQWLLSFNQRLQSWGFATDRVLNSSEYQLFNKYQQTSLGL 400

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
             + +      +A + ++ +   +     + +  K+  + ILG+LE+  L FD   + G+ 
Sbjct: 401  NLLSQYEKSVSADQALEALKNWLSQVMFQAQSAKTP-IQILGSLEAEGLYFDAAWVLGMT 459

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAE-KYIGQAAHDFE--MANGTRHLIYTRSLRENN 707
                P +     F+   + +   +  +    I Q A D    +   +  +I++ +   N 
Sbjct: 460  NDFLPASLNSPRFIPFDIATKHQIPRSNYDLITQDAKDTTDNLMALSNQVIFSYAQTHNE 519

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                 S  +     +      +                        +      P +  + 
Sbjct: 520  SEQQGSPLI-EFNNVVEPTIQN----------------KTAHVATEFTNDSTAPKVSNKD 562

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--IN 825
             +   S +K  +   +  +    L +          +R ++G + HN++ E+ +K     
Sbjct: 563  VSGGVSILKNQMACAFKGF-THRLNIRRSDAPHIGFNRIEQGEIIHNVLEEIYQKISCRE 621

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPH---IDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
            +     +  +K II S  ++E           + R+   ++ + F+  E++       + 
Sbjct: 622  QLLSCNDQDLKAIIKSKVDQELTNYSKSNFIEVERNRLLELVNQFILSEKQRD-EFRVLS 680

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEA 941
                +K+ I  +   +    DRID +++G   I DYK G           + +PQL +  
Sbjct: 681  TEQESKVDIAGLAFDV--RLDRIDEMENGDQIIFDYKIGKTSVSNWCGDIIKEPQLPIYT 738

Query: 942  AALKAGS--FSQIDCRKVANLFYIRLKQKFKIDCITNDKKK--YSADELSEKSLKNLIEI 997
             + K     F ++   K++   Y  L +        ++KK    + DE  E   + L + 
Sbjct: 739  LSNKTQGICFIELASDKIS---YKGLSRDKDSLPKQSNKKTTCAAWDEQLEIWQQKLNKT 795

Query: 998  VTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
                Q G+    + +  S+ +    EYD L R+
Sbjct: 796  SLNFQQGQ----AQVLPSKNACEYCEYDSLCRI 824


>gi|322389862|ref|ZP_08063403.1| exonuclease RexB [Streptococcus parasanguinis ATCC 903]
 gi|321143443|gb|EFX38880.1| exonuclease RexB [Streptococcus parasanguinis ATCC 903]
          Length = 1088

 Score =  165 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 120/982 (12%), Positives = 285/982 (29%), Gaps = 147/982 (14%)

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            + ++ E   L  I    L         +  L +  +        + L  +   ++T +  
Sbjct: 72   LNQVFEEQPLDDIGLGMLFYKALSQMKDQDLKVYGALRKDPQFIQQLVQLYHELQTAQMD 131

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            + DL  L+  +           L    +  +E LV+    S       L + E   L + 
Sbjct: 132  FTDLELLEEAEKRED-------LLAIFEAVSEMLVQHRYESQSKIAFFLNQVEEGQLEEQ 184

Query: 226  TKG-PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
             +   I++ G T        L+S +     G  ++ G+  +     +     +     +S
Sbjct: 185  LQDVAIVVDGFTRFSAEEEALISLLHR--KGVEIVIGV--YTSEKAYRASFREGNLYQAS 240

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                       L +L    +I+ +   +    S     R                 +   
Sbjct: 241  VDF--------LLQLAKTFEIQPQYCGQAIEDSFSRITR-----------MLEARYDFSQ 281

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRV 402
            +E+++ +  +    V L + + ++EE   +A ++R  L +    +   ++  D    +  
Sbjct: 282  VEDELEDQDRTA--VQLWQTNTQKEELEFVAKSIRQRLHDGARYRDIRVLLGDVEAYQLQ 339

Query: 403  K-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                  ++ I   +     +       ++ SL            +  L+K  L       
Sbjct: 340  LKTIFDQYQIPFYLGRSEAMVHHPLIQVIESLGRIKQFNYQTEDVINLLKTGL------- 392

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                             +    ++   +  +           H P   +R  + + E   
Sbjct: 393  ---------------YSDLTQAEVDAFEQYLRFAEVKGATKFHKPFTSNRQGKFNLEKLN 437

Query: 522  LLVDHILQCITPL-----VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
             L + +++ + P              +    L  +  ++     ++++ L+E        
Sbjct: 438  TLRERVVEPLVPFFSQRKQKVTQLLTAFTEFLQEAQLSQNLQALIKDLSLEEQE-----R 492

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            +++  K    +  ++       +    +++ ++   +     +        + +      
Sbjct: 493  YDQVWKAFLHVLEELNLVFEDQELTVDDFLALLLSGMQLSQYRTVPATVDVVTVQSYDLI 552

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA---------AHD 687
              L    +   GL +  +PK       LS   +  LN  T E    Q             
Sbjct: 553  EPLTAPYVYAIGLTQERFPKIAQNTSLLSEEERQQLNEATQEGAELQVVTSENLKKNRFV 612

Query: 688  FEMANGTR--HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG--------QC 737
                       L+ +     N +    S +L  L        +   + +         + 
Sbjct: 613  AVSLLNAATNQLVLSAPSLVNEMKDSVSPYLVELTKEPIAIEWTTKQAQASSDDIGTYRA 672

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPP----------------------------------- 762
             L    +L            +                                       
Sbjct: 673  LLARVIELHQEEIASELSAEEASFWGVAVRVLRKKLAAEGIQIPQISTELKSRQLQSDTL 732

Query: 763  ----LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                 E +  T S S + +     YA Y R +L L      +  PD    G   H I  +
Sbjct: 733  QALYPEGKALTLSASALNEYYKHQYAFYLRYVLGLQEDETIR--PDARSHGNFLHRIFEK 790

Query: 819  LIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
            ++K   ++      +   +    ++ F++           R L    +        + Q+
Sbjct: 791  VLKDGSDQAFDRRLNEAIRETSQEAEFQQLYGESGETEFIRQLLLDTAKKTGRVLAQ-QN 849

Query: 877  SIEKIFVNIPAKMAI-------ESIGIHLTGFADRIDLLKS-GFVDITDYKTGDNP-KKE 927
             IE I        +        +   + L G  DRID L+  G + + DYK+       +
Sbjct: 850  GIETIGEETLFGGSTHTSYPLSDGRLLQLRGKVDRIDQLRDRGALGVVDYKSSLTQFHYD 909

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
                 ++ QL    +A++     Q + + +    Y+ +      D + + KK  + ++  
Sbjct: 910  KFFNGLNSQLPTYLSAIQDLKEYQ-EEQGIFGAMYLEMG-----DPLVDLKKTKTVEDAI 963

Query: 988  EKSLKNLIEIVTLLQNGEQPFI 1009
             +++K+  +   L    + P++
Sbjct: 964  NQTMKS-QQYKGLFMADQAPYL 984


>gi|170782261|ref|YP_001710594.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
            sepedonicus]
 gi|169156830|emb|CAQ01997.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
            sepedonicus]
          Length = 1089

 Score =  165 bits (416), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 129/1046 (12%), Positives = 254/1046 (24%), Gaps = 127/1046 (12%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
            L   + E      L+P   A V +  P++ A   LR E     G   T+ P+ ++   V 
Sbjct: 53   LRELVAERILAQGLDP---AEVLVLAPSRAAATRLRDELALRVGV-PTLGPLARTATSVA 108

Query: 86   EEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
             E        +    P + +  ++   +A L+               P  P  L +    
Sbjct: 109  FEVLARRAAETGTEPPRLLTGAEQDQIIADLLAGHEEL------GTGPAWPDPLGVEVRR 162

Query: 145  AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                   L +++     E  + + L  L        W+ AA+F +             + 
Sbjct: 163  LRAFRTELRELLMRATEEGVRPDALAELGRAHDVPEWIAAAEFAREYEDVVDSF--RGDH 220

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                      +   +          ++      +  AT  L+  +A    GA V+   D 
Sbjct: 221  LDSAELLAEAVLLVSRGEALTGIRLVVADDLHEATVATLSLLRALA--ARGADVIAFGDP 278

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
             +  A +                       +L +L   L +       L  V  +     
Sbjct: 279  DVAAATFRGAEAS-----------------ALGRLSTVLGLPGLRTLVLDRVHRQPPALR 321

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
             + S        +         +    +      + +IEA     E   +A  LR     
Sbjct: 322  ALTSAVTARIGAAGAGRQRQAGSAPGLVDDADP-IQVIEAPTRALELARLARRLREEHLL 380

Query: 385  NKKKSA---LITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFK- 439
                 A   ++    +L  +V   L    +    + AG  L   L +  L   ++ +   
Sbjct: 381  GGVPWARMVVLVRSGSLVPQVARSLATAEVPTRTAVAGRALRDDLAALALIRAVDVVLGR 440

Query: 440  -LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI-------MDLKSL 491
                    A L   PL      +    R     E +A  G+++S ++             
Sbjct: 441  VPLTPDIAAELATGPLGGLDGVQLRRLRLAMRQEELAGDGHRSSDELLVEALAAPGRLET 500

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-----CG 546
            +    A +          +R           L+ H+ +       +      T       
Sbjct: 501  LDLAPARRLARLARTLQGARELAAADGTIEELLWHLWEGSGLATPWFEQALQTGIVADQA 560

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT----------------------- 583
            N  +     L     + V  +  R   +   E  G                         
Sbjct: 561  NRDLDGVVALFTAARRFVERNPGRPASDFVEELLGAEVPEDTLSPQPLADTVLVATPSAV 620

Query: 584  --------------------------LSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                                      L               A+  E  +++   +    
Sbjct: 621  VGAGYEVVAVAALQECVWPNLRLRGSLLHPPRLSAVARGLDGADVDERAEVLGDELRMLA 680

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            +         +      +    +    ++         +  A+   +++   + L ++  
Sbjct: 681  LAVSRASRVVVLSATANDEEAPSPFLRLVPPAPGQAEAEAGAEAGRVAKDAPAALRIRPD 740

Query: 678  EKYIGQA---AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
                 +    A   E+A   R  +     R  +    A R        G        +  
Sbjct: 741  HPLSLRGLVGALRRELAVVHRDAVLLDDGRVVSGDRTARRPADATRERGLAAASALARLA 800

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
             +          Y  ++P    P             S S ++     P   +  +     
Sbjct: 801  AEGVTGADPAEWYGLREPSTTEPVVDLTDPEARVPVSPSRLEAFERSPLNWFIDQASGGS 860

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                          GT+ H ++ E          P                E+       
Sbjct: 861  -------TSTAMGIGTIVHAVMEEASLDPDADLRPPALEARLDARWGELPFESPWVGERE 913

Query: 855  IWRHL-----FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909
              +              F             +      ++ +      L G  DRI+L K
Sbjct: 914  RRQAGELIAGVSGYLRDFAAD------GGRMLAAEGGFELEVGVA--RLRGKIDRIELTK 965

Query: 910  SGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV-ANLFYIRLKQ 967
             G V I D KTG + P +         QL     A   GS  Q+           + +  
Sbjct: 966  EGAVVIVDLKTGRHYPTRAEIPAHA--QLGSYQLAFTEGSLEQVPAEAPSGGAKLLYVSG 1023

Query: 968  KFKIDCITNDKKKYSADELSEKSLKN 993
              +        ++    E  +     
Sbjct: 1024 GTRGLPYRELPQEPLTREELDGFRAR 1049


>gi|47567600|ref|ZP_00238311.1| exonuclease RexB, putative [Bacillus cereus G9241]
 gi|47555795|gb|EAL14135.1| exonuclease RexB, putative [Bacillus cereus G9241]
          Length = 1171

 Score =  165 bits (416), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGGMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           I I G     P    ++  
Sbjct: 167  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMVCGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + VA+  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLETHYEARPNEKFHGE---------ASVAIRTAANLR 321

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   +   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVADENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 562  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 622  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ ++ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D    ++G  + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I    
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVN 1027

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1028 GDASEAEIEKEILKKFK 1044


>gi|229028910|ref|ZP_04185011.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1271]
 gi|228732481|gb|EEL83362.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1271]
          Length = 1166

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 107/977 (10%), Positives = 256/977 (26%), Gaps = 156/977 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 102  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 161

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L  +         + L+  +           I I G     P    ++  
Sbjct: 162  QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQ 219

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 220  LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 270

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 271  KTIPLMEQ-----PRFHSQALAHLETHYEARPNEKFHGE---------ASVTIHTAANLR 316

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   D   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 317  AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 377  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 436

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D   +    +  + ++I   ++    P  + +   +     + 
Sbjct: 437  RWTSEDPWMYRRYRSLDDTDGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +     +   L  +D  ++    +  +            
Sbjct: 497  MCEAVYLFLEELDVPKKLEALRVRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 556

Query: 577  FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                   + S   + ++  +     + +   +I    +        I  +  +     ++
Sbjct: 557  SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 616

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678
              +L+ +   +           T +     + +   +  +  E                 
Sbjct: 617  EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 676

Query: 679  ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                                       +  +      T  +  +  +++           
Sbjct: 677  ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 730  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSSVVSRDLYGDTIKG 789

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 790  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 847

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ L+ + I    +++ L       +      +I    S +  E    S 
Sbjct: 848  ADLSIKECEHLSVLVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 907

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRIDLLKSGF---VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D  +      + I DYK + 
Sbjct: 908  FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSS 967

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                       +  Q+      + + +     +      A + Y  +      + I   K
Sbjct: 968  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEMK 1022

Query: 979  KKYSADELSEKSLKNLI 995
               S  E+ ++ LK   
Sbjct: 1023 GDASEAEIEKEILKKFK 1039


>gi|225868712|ref|YP_002744660.1| ATP-dependent exonuclease subunit B [Streptococcus equi subsp.
            zooepidemicus]
 gi|251764627|sp|C0MGY7|ADDB_STRS7 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|225701988|emb|CAW99552.1| putative ATP-dependent exonuclease subunit B [Streptococcus equi
            subsp. zooepidemicus]
          Length = 1073

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 129/958 (13%), Positives = 264/958 (27%), Gaps = 137/958 (14%)

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
             E  L +             L ++   ++       DL  L   +         D + I 
Sbjct: 98   QEDELKVFHRLRTDQAFIAQLVELYKELQAANLTAFDLTTLDRPEKQE------DLITIM 151

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            +K   E+L+             L  A        +  +  ++I G T       +L++ +
Sbjct: 152  TKA--EQLIAQGDYDQSSRLAQLAEAIKSKSLDDELRQTVLVIDGFTRFSAEEEQLLALL 209

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                   ++      +I    +     K     +S        Q    K +         
Sbjct: 210  NEACEEIVIGA----YISQKAYRLAFTKGNLYEASLAFIQQLAQQFQTKPI--------- 256

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                  V +  + R   + ++       D + +   +          S V + +A N++E
Sbjct: 257  YTTSEKVFDVSFSRLTQLLEANHDYSKLDWQLSAKDK----------SKVVIWQALNQKE 306

Query: 370  EAISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
            E   +A A+R  L +  +      L+    +   ++     +F I   I    P+S    
Sbjct: 307  ELEYVAKAIREKLYQGYRYKDMLVLLGDVASYQLQIGPIFEKFEIPYYIGKQEPMSAHPL 366

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
               + SL            I  L+K  L      E  L + +  L    ++G        
Sbjct: 367  VQFVESLERGRRYNWRREDIVNLLKSGLFGRFQ-EGELDQLEQYLVFADIQGFTKFSRPF 425

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
             L S     +        +   +  +    ++L           +  L+T+         
Sbjct: 426  TLNSSRQYPL------PLLNQLRLAVVTPLQQLFKSQKQLGASLLDKLMTFFKTIQLADN 479

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              +++                  R+      EE  K  + +     +     K    + +
Sbjct: 480  FEALA---------------GSRREADREKDEEVWKAFTGILETFYQVFGQEKMTLADCL 524

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             +I   +     +        + I         +   +   GL+   +PK T     +S 
Sbjct: 525  ALIKMGMQTAHYRTVPATLDVVSIKSYDLVEPHSKPFVFAIGLSRSHFPKQTKNTSLISD 584

Query: 667  VMQ----------SDLNLKTAE--KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
              +            L++ + E  K   Q A     A  T+ L+ +      N     S 
Sbjct: 585  QERASINEQTASYQRLDVPSFENIKKNHQTALSLFNA-ATQELVLSLPTSLTNSSDDVSP 643

Query: 715  WLQRLLVLGGTDFFDNL------------------------------------------- 731
            +L+ L+ LG                                                   
Sbjct: 644  YLKELIALGVPVIEKGKNRLSHSAADIGNYKALLSRLVAINRQGIADDMTSEDRNFWTVA 703

Query: 732  -----KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                 ++     L       + T +P             QP + S S +    N+ Y  +
Sbjct: 704  LRYLKRRLADEQLSLPAFEHHLTTKPVAPEVIETRFPSHQPLSLSSSALTVFYNNQYKYF 763

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS--HFE 844
             + +L L         PD    G   H I   + K R +    +        ++    F+
Sbjct: 764  LKYVLGLQEPESIH--PDARIHGQYLHRIFELVTKDRTDAAFDQKLGAAIAAVNQQSAFQ 821

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
            +             +   I++S        Q  ++        ++A+    + + G  DR
Sbjct: 822  QVYQADAEGRYSLEVLKGIAYSTAPVLNLNQ-GMQVAKQEEAFELALGHQAL-IRGVIDR 879

Query: 905  IDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            ID L  G + I DYK+             + PQL    AALK         + +    Y+
Sbjct: 880  IDQLADGRLGIVDYKSSARVFDIGAFYNGLSPQLVTYLAALKNKG------QGLFGAMYL 933

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
             +++                D+L   + K L     +     + ++++      + + 
Sbjct: 934  HMQEPRLSLSDFKVLD----DQLVAAAYKELT-YKGIFLAQAKEYLANGSYHLNNTLY 986


>gi|295103245|emb|CBL00789.1| ATP-dependent nuclease, subunit B [Faecalibacterium prausnitzii
            SL3/3]
          Length = 1120

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 108/970 (11%), Positives = 240/970 (24%), Gaps = 133/970 (13%)

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
            A+ ID +++     + L  L  +            L +  + +   L       P     
Sbjct: 120  AETIDELKSAGLSGQQLQELARDCGSE--SAKLGELALIFQGYESLLAGTG-MDPADRLE 176

Query: 213  ALMRAEAEHLMK------GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                     L +        +  + I           RLM  +        V    D   
Sbjct: 177  LAADRLEAALARDELPDFLREREVFIDEFDTFNVPKKRLMGAMLAALPAVTVALCED--- 233

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                                + +      L +L              G            
Sbjct: 234  --------GAPMQPGDLELFSGAKQVAAQLRQLARK----------NGAQVAAPELLRRD 275

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
            +     P   +     +      P         A    + E   A +    L        
Sbjct: 276  LRHKDAPGLDALTELLETGSCTPPESAPELRLFAAASREEEARCAAAAIRRLMRQGVRCG 335

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
            K + +          V+ E     I +          +  ++ + +LL  +   +    +
Sbjct: 336  KIAVVCRDISLYRAAVRYEFRMAEIPLYCDEPTTPEFSAPATAVRALLALLRGADMTEQL 395

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              L K  L     PE                    S +    ++          +     
Sbjct: 396  TVLAKTGLCDLTEPEVCALENY---------AYTWSPNAAAWRAEFTKSPRGFGDAELTE 446

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                     +   A      ++  +  L     + N+   + ++    K      Q    
Sbjct: 447  E-----DTLNLTRAENARKKLVTAVDTLRGKVRSANAEQISRALYFCLKELGAEGQQAAQ 501

Query: 567  DEH-----RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             E                E   +  L  ++            E+ D+   L+    +   
Sbjct: 502  VEDIRTARGIPAAEEAAREWNVVMQLLDEMARLLGSQGITVPEYEDLFGLLLRSSDLGHI 561

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-----SDLNLKT 676
             +    + +    + RL   D + + GL EG +P   A++  L+   +       ++L  
Sbjct: 562  PQTLDAVVLASAGKMRLDAPDYVFVLGLAEGEFPCTPAESGLLTHADRDLLMAKQIDLPD 621

Query: 677  -AEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
              E  + +    F  A       L  +    +      A   +   L             
Sbjct: 622  CFENRVVREQVCFYKALTAPAKGLWMSWPKGQGQTLCAALEPIVEALQPAAPQLELIDLA 681

Query: 734  RG-----------------------QCYLDWTRKLDYTTKQPHYKRPKPFPPLE------ 764
                                     +        +         +R +  PP +      
Sbjct: 682  ATPADGLDVLGGGWPLTERERASLTEALRAPGEGVQTPRGLALLQRMEQDPPRQVQDLPT 741

Query: 765  -----AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                  +    S S++++     Y  + + +L L      + +      GTL H ++   
Sbjct: 742  LEALLGRRLHISPSQLEKYYTCRYGYFLQYVLGLKPRR--RAELSADQSGTLMHWVLQMA 799

Query: 820  IKKRINKNTP-------------EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISH 865
            +     ++ P              +  L   ++D +  +                 K   
Sbjct: 800  LDPHPGEDNPCAGLRPFLELDDAAMADLAAALVDEYARRYLPEDTARFAYLLSRLKKSMT 859

Query: 866  SFLEHEE--KIQSSIEKIFVNIP---AKMAIES--------IGIHLTGFADRIDL--LKS 910
            S L +    + QS  + +   +     + A+            + L G  DR D      
Sbjct: 860  SLLCYLRDEQNQSQFKPVACELKIGRGEDAVPGQVYRLSDGRTVQLVGTVDRADEWIEDD 919

Query: 911  GF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
            G   V + DYKTG      +     +D Q+ L   +L   +  +    + A + Y  L  
Sbjct: 920  GTRWVRVVDYKTGSKKLDLKEVYCGLDCQMLLYLFSLTRDAGGRFTGAQPAGVLY--LLA 977

Query: 968  KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ------PFISHLRLSEKSNIQ 1021
                  +   +   + +   +  +++  +I   +   E        + +      + + +
Sbjct: 978  DPAPQTLPRGQAARAVEYQLDGLVRDEQKIFDAMDADETGKYLPFGYRNGAPSPYQKDKR 1037

Query: 1022 SEYDHLARVA 1031
            ++   L+R+ 
Sbjct: 1038 ADSAKLSRIR 1047


>gi|229016489|ref|ZP_04173430.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1273]
 gi|228744756|gb|EEL94817.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1273]
          Length = 1171

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 106/947 (11%), Positives = 250/947 (26%), Gaps = 151/947 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L+         Y   L+   ++         I I G     P    ++  
Sbjct: 167  QLLYDDFERALIGKYL-DSEDYLQLLIEKLSDS-EYVKGAEIYIDGFHSFSPQELEIVRG 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +            + ++     I+ E
Sbjct: 225  LMKLGTRVTITLTIDEKTLAQPVNELDLFYETTLTYE---------RIKQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSQALAHLETHYEARPNEKFHGE---------ASVTISTAANLR 321

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   D   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466
                 + S L  I     + A+   VK  L       K   R                  
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGK 441

Query: 467  AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               + +    R  ++  D  ++    +  + ++I   ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDASEMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +         L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEELRVRAEENGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK---------ANAIEWIDIITRLIDGETVKPKIEK--- 624
                   + S   + ++  +             +     DI    I G            
Sbjct: 562  SLSMFTEVMSTGLEALQFANIPPSLDQVLVANIDHSRLSDIKATFIIGVNEGVIPAAPMD 621

Query: 625  -------------SSTLFILGTLESRLLNFDTLI---LGGLNEGVWPKNTAKN----PFL 664
                         ++ + +  T    LL    ++   +   +E ++      +      L
Sbjct: 622  EGMLSDEERNVLTAAGIELAPTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLL 681

Query: 665  SRVMQSDLNLKTAE--------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
            +      +     +             +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKESFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDTIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S ++      YA +A+  L L     F    D  D G LFH  +  +  + + +N   
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852

Query: 829  --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                      ++ L+ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSTLVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRIDLLKSGF---VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D  +      + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965
                       +  Q+      + + +     +      A + Y  +
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI 1019


>gi|309810402|ref|ZP_07704236.1| UvrD/REP helicase [Dermacoccus sp. Ellin185]
 gi|308435642|gb|EFP59440.1| UvrD/REP helicase [Dermacoccus sp. Ellin185]
          Length = 1117

 Score =  164 bits (415), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 122/1028 (11%), Positives = 274/1028 (26%), Gaps = 122/1028 (11%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
             +   L+   +    R D           +  PT+ A   LR+      G  S+  PI +
Sbjct: 90   TLAVELVAQAVEGGARPD--------ECVLLSPTRVAAGALRARVTTRVGGTSS-EPIAR 140

Query: 80   SLGDVVEEKFTADLL-LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
            +   +                   ++  ++ + L  L+   R  L          +    
Sbjct: 141  TPQALAFGILRMRAAMDDLPAPRLLAGPEQDVVLKELLEGHRLGLG------AAPAWPED 194

Query: 139  PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                         L D+I      +   + L  L  E     W+ AAD L          
Sbjct: 195  LAEALTTRGFRNELRDLIMRAVEWDVSSDHLRRLGAEHGRDEWIAAADVLDEYDDV--TA 252

Query: 199  LVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHP 253
            L    A  P     A  +A  E+       +     ++I  +     A+   ++ +    
Sbjct: 253  LSRPGAFDPAWILGAAAQALRENETLRERVRAQLRLVVIDDAQELTRASVGFLTELVGPG 312

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
               ++L   D  +    +     +     ++    S             L       +RL
Sbjct: 313  QRLVLLGNPDVTV--QAFRGADPRYLEQVAAQHGASRRF---------VLGYGHRQPRRL 361

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
              V   +  R   +         +                +    V +    +  +EA  
Sbjct: 362  AEVVERVTARIGSVDGIAHRSVVT----------------RPGGGVDVALLRSGAQEAAH 405

Query: 374  IAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHSSI 429
            IA  LR +  ++    K  A+I         ++  L    + +    A + L        
Sbjct: 406  IAGVLRRAHLKDGVAWKDMAVIVRAAAGTSALRRALNAAKVPVAVPPASLALRDEPAVRP 465

Query: 430  LTSLLNAIFK--------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                L  +            D  A A+                    + + L  LR    
Sbjct: 466  FLHALEIVTSRTRGSEQAPVDGDADASRAGVSADLALDLLTSPLGGADPVVLRRLRRLLR 525

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              ++    + V D +                          ++      +     +   +
Sbjct: 526  REELAAGGNRVSDELLGACLLEPALLVSLGPEAAPARRVSRVLAAGAAALRAAPPHDDAE 585

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
            +        S   +          +   R   +L         ++ F + +         
Sbjct: 586  HVLWQMWQASGLAEAWEANALAGGISGTRADRDLDALLALFAAAAAFVERLPGAGVADF- 644

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                  + ++ + G+ +         + ++    S    + T+++ G+ EGVWP    + 
Sbjct: 645  ---LDHVRSQDVPGDRLVAAAPDEDAVALVTAAGSAGGEWHTVVVAGVQEGVWPDLRLRG 701

Query: 662  PFLSRVMQ--------SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
              L               L  + A     +        +  R  +   ++R+ +     S
Sbjct: 702  SVLGSEDLVDILSGRGRSLPARQAAVRHDETRQFAMAMSRAREHVVVTAVRDEDE--QPS 759

Query: 714  RWLQRLLVLGGTDFFDNLKK-----RGQCYLDWTRKLDY--------------------T 748
             +L  +  L      D +++     R         +                        
Sbjct: 760  VYLDIVDPLAPGAAADAMREFTPVARPMTLAGLVAEARRMLADQDEAVRDEGARRLARLA 819

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN-DPYAVYARRILKLDFI----PHFKKDP 803
                    P+ +  L ++         ++ +   P  +       L+++      F    
Sbjct: 820  EHDVPGADPEQWWALVSRSDDRPVRPPQEWVRVSPSKIEGFHRCGLNWLLTTNGGFGPSV 879

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL-PPHIDIIWRHLFHK 862
              +  GTL H +  E           +   LM + ++  + +  L    +    +     
Sbjct: 880  GASTIGTLVHELAEEF---------ADEPALMDEALEKRWPRLGLGDSWVSRGEKARAQS 930

Query: 863  ISHSFLEHE-EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
            +      +  +   +              +      ++G  DR++      + + DYKTG
Sbjct: 931  MVKKLQGYLGDAAATGWAGEAAERRFSAIVGRA--KISGSIDRLEHHPERGLRVIDYKTG 988

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
             + K +  +    PQL+   AAL+A +F     R  A    ++L Q       +  + + 
Sbjct: 989  SS-KPKDEEVAAHPQLAAYQAALEADAFG--PGRPSAGAALVQLGQAAGTGANSTARVQA 1045

Query: 982  SADELSEK 989
                ++++
Sbjct: 1046 QPPLVADE 1053


>gi|88596293|ref|ZP_01099530.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
            84-25]
 gi|88191134|gb|EAQ95106.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
            84-25]
          Length = 788

 Score =  164 bits (415), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 87/457 (19%), Positives = 145/457 (31%), Gaps = 59/457 (12%)

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +E    +      I +          E I +    I   ++         + ++G LE
Sbjct: 376  EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694
            SR L FD +IL   NE   PK +    FL+  ++    L + ++        +E      
Sbjct: 434  SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
              +       E       SR+L  L      DFF       + YL+  +      K    
Sbjct: 494  LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                P           SFS    L N     Y R IL L       ++    ++G   H 
Sbjct: 547  PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            ++    K   N N         ++  +  +KE    +I  +   +F      F ++E++ 
Sbjct: 607  MLEIYYKNYANNNFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660

Query: 875  QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
             S         +     + + +  I L G  DRID  K G + I DYK+G  P       
Sbjct: 661  FSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714

Query: 932  LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                QL+   A         F  ++  ++                    +K  S DEL  
Sbjct: 715  --SYQLAFYQALYDENASVGFYDLNSMQI------------------LHQKAKSLDEL-- 752

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
               + L ++V L+   E  F        + +    Y 
Sbjct: 753  --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 780


>gi|86149363|ref|ZP_01067594.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
            CF93-6]
 gi|85840145|gb|EAQ57403.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
            CF93-6]
 gi|284926689|gb|ADC29041.1| hypothetical protein CJSA_1405 [Campylobacter jejuni subsp. jejuni
            IA3902]
          Length = 788

 Score =  164 bits (415), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 87/457 (19%), Positives = 145/457 (31%), Gaps = 59/457 (12%)

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +E    +      I +          E I +    I   ++         + ++G LE
Sbjct: 376  EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694
            SR L FD +IL   NE   PK +    FL+  ++    L + ++        +E      
Sbjct: 434  SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
              +       E       SR+L  L      DFF       + YL+  +      K    
Sbjct: 494  LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                P           SFS    L N     Y R IL L       ++    ++G   H 
Sbjct: 547  PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            ++    K   N N         ++  +  +KE    +I  +   +F      F ++E++ 
Sbjct: 607  MLEIYYKNYANNNFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660

Query: 875  QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
             S         +     + + +  I L G  DRID  K G + I DYK+G  P       
Sbjct: 661  FSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714

Query: 932  LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                QL+   A         F  ++  ++                    +K  S DEL  
Sbjct: 715  --SYQLAFYQALYDENASVGFYDLNSMQI------------------LHQKAKSLDEL-- 752

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
               + L ++V L+   E  F        + +    Y 
Sbjct: 753  --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 780


>gi|251810339|ref|ZP_04824812.1| ATP-dependent nuclease Rex subunit B [Staphylococcus epidermidis
            BCM-HMP0060]
 gi|282875535|ref|ZP_06284406.1| ATP-dependent nuclease subunit B [Staphylococcus epidermidis SK135]
 gi|251806147|gb|EES58804.1| ATP-dependent nuclease Rex subunit B [Staphylococcus epidermidis
            BCM-HMP0060]
 gi|281295562|gb|EFA88085.1| ATP-dependent nuclease subunit B [Staphylococcus epidermidis SK135]
 gi|329737712|gb|EGG73955.1| helicase-exonuclease AddAB, AddB subunit [Staphylococcus epidermidis
            VCU028]
          Length = 1159

 Score =  164 bits (415), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 140/1043 (13%), Positives = 293/1043 (28%), Gaps = 151/1043 (14%)

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            G +  E    + L            ++ L  A L ++  + +     D      L L  S
Sbjct: 59   GSLRTEVLHFERLSHRVFQEVGGLTEQRLSKAALEMMIFHIVQQHESD------LKLYGS 112

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL-AADFLKIASKYWTERLV 200
             A    L++ LA+ I   +      E L+ L              + + +  K    R+ 
Sbjct: 113  QAQYYGLSEKLAEQIQDFKKYNVTPEHLNQLIENHSIQTRTKHKLEDISLIYKQLESRM- 171

Query: 201  ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                       +              K  + I G         R++  +  H     VL 
Sbjct: 172  -NGEFITAEDSLQQFIEILSQSQWIKKAEVFIDGFHNFSTLEYRIIEALVQHAKQVTVLL 230

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              D                           HP     K  + L             +   
Sbjct: 231  TTDGSH------------------------HPFSLFRKPSEVL------SHLEDIANRLN 260

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAISIAIALR 379
               +     +F   +  D++N +   + +    K   + V + E+ + REE   +A  + 
Sbjct: 261  INLNKTYFNTFYRYNNDDLKNLENGFDALQFTPKHHQNHVKIFESSSMREEINEVARRIL 320

Query: 380  ---MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                  D   +  A++  D + A   +  L  + I  +I     ++      +L SLL  
Sbjct: 321  KDVREADYKFRDIAILYRDESYAYLFESILPSYDIPFNIDTKKSMTHHPIMEMLRSLLEV 380

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I       A+  L K  +    F         + LE   L         +D     +D+ 
Sbjct: 381  IRSNWHINAMLRLFKTNVLTSQFKRSSYL--IDLLENFVLERGIYGKRWLDEDIFSIDQF 438

Query: 497  ATQKNNTHVPHWQSRLS-EEDKELAVLLVDHILQCITPLV---TYKTNKNSTCGNLSISD 552
            +     +H      +   +E  +L   +++ +L     +    T K    S   +L   +
Sbjct: 439  SRMGRKSHQLTEGHQALYKEVIKLKKNVINKVLYFEQAMNEAHTVKDYATSFYESLEYFE 498

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                 +T    + L    +      ++    L  +   ++      +    +++D+    
Sbjct: 499  LPSQLMTQRDELELAGLTEKAE-EIDQVWNGLIQILDDLVTVFDDQEMTLQQFLDVFDIG 557

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            ++        +    + I     +++ N   + + G+N+G+ P+  + +  ++   +  +
Sbjct: 558  LEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGMNDGILPQTVSSSSLITDEEKKYV 617

Query: 673  NL-------KTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNI-PTIASRWLQR---- 718
                      T++      A    +A       + ++ SL  N+      S +L +    
Sbjct: 618  EDNAHVELSPTSDILQMDEAFVCYIAMTRSQQSVTFSYSLMGNSGDEKEISPFLTQIKEL 677

Query: 719  --------LLVLGGTDFFDNLKKRGQ--------------------CYLDWTRKLDYTTK 750
                    L  L        ++   Q                     +LD    +    +
Sbjct: 678  FYDLEITNLQDLHKAQPLLMMQHSHQTKIQLFEYLRGWLDHEDIDYRWLDAYLAIRDDDQ 737

Query: 751  QPHYKRPKPF----------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                                        L  +    S S  +     P+  YA   L+L+
Sbjct: 738  LNQGLDYLTTSLKYDNETVQLNEILSQQLYGKTINASVSRFEGYQQCPFKHYASHGLRLN 797

Query: 795  FIPHFKKDPDRTDRGTLFHNII----TELIKKRINKNTPEINHLMKQIIDSHFEK----E 846
                 K +    D G +FH+++      +     N +T  I  L K+ ++    K     
Sbjct: 798  ER--TKYELQNFDLGDIFHSVLKYISDRIYGDFKNLDTKNIQSLTKEALELILPKVQFNL 855

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK--------------MA 890
                            I  + L+  +     S           +              + 
Sbjct: 856  LNSSAYYKYLSKKIGSIVETTLKALKYQGEYSKFVPQRFETGFRKSPKNKGELVAQPLIT 915

Query: 891  IESIGIHLTGFADRIDLL--KSGFVD-ITDYK---TGDNPKKETAQKLIDPQLSLEAAAL 944
             + I I++ G  DRID           I DYK   +            +  Q+      +
Sbjct: 916  NQGIPINIRGQIDRIDTYTKGDHSYVNIIDYKSSESSATLDLTKVYYGLQMQMMTYMDIV 975

Query: 945  ----KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
                +    + I   K   L Y  +    +             D+  +  +KN    ++ 
Sbjct: 976  LQNKERLGLTDI--VKPGGLLYFHV---HEPRIKFKSWADIDEDQFQKDYIKNFK--MSG 1028

Query: 1001 LQNGEQPFISHLRLSEKSNIQSE 1023
            L N +Q  +  L +  +    S+
Sbjct: 1029 LLNRDQEVLDALDIRLEPKYNSD 1051


>gi|323692611|ref|ZP_08106843.1| hypothetical protein HMPREF9475_01706 [Clostridium symbiosum
           WAL-14673]
 gi|323503308|gb|EGB19138.1| hypothetical protein HMPREF9475_01706 [Clostridium symbiosum
           WAL-14673]
          Length = 793

 Score =  164 bits (415), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 95/651 (14%), Positives = 185/651 (28%), Gaps = 101/651 (15%)

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
               +L + L  + K   + ++   +K  L                LE  AL     S+ 
Sbjct: 4   PMVELLRAALEVMQKNFSYESMFRYLKTGLVTDKQEMLS------RLENYALALGIRSFK 57

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
             D+    + R A   N   +  ++  +    + L  +                    + 
Sbjct: 58  RWDMAWEAVYRGAELINLEELNAFREEILTPLRPLKDVFGSRKSTVREKTEALVHFLEAL 117

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                + D+                       + +    + +LF +I            E
Sbjct: 118 HIEEKLQDYEAEFRET--------GEVSLEKEYSQVYGLVITLFDRITALLGDEAVGKKE 169

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
           + DI+    +   V         + +     +RL +   L   G+N+G+ P  + +   L
Sbjct: 170 YSDILDAGFEEIKVGLIPAVVDRVVVGDITRTRLSHIKVLFFAGVNDGIVPSASGRGGIL 229

Query: 665 SRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRE-NNIPTIASRW 715
           +   +  L         TA +          +     +  L  + +    +      S  
Sbjct: 230 TEAERRSLKSRQVELAPTAREEGFLQRLYLYLVMTKPSDRLYLSYAASSSDGKSLRPSGL 289

Query: 716 LQRLLVLGGTDFFDNLKK---------------------------------------RGQ 736
           + ++L +          +                                       R +
Sbjct: 290 IGQVLKMFPEKRVMRADEKQMAAWSLPLGKRRVIEGLKDYGSSRQDSRFMELFGFFLRSE 349

Query: 737 CYLDWTRKLDYTTKQPHYKR---PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
            Y D  R+L   +   +  R         + +     S + ++Q  +  YA +    L+L
Sbjct: 350 LYRDELRQLVEASFYTYEDRGIGRTAAKEIYSATLHGSVTRMEQYASCAYAHFLAYGLEL 409

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFEKE 846
                   +   TD G LFH  I    K+   +N         +   L+ + +    +  
Sbjct: 410 SER--PVYELAATDIGNLFHGSIDLYFKRMKEENRSFREISEEDRKKLVSECVSDVTKDY 467

Query: 847 N---LPPHIDIIWRHL-FHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIE- 892
               +       +      +I+    +   E+  +   E     +          M I  
Sbjct: 468 GNTIMSSSARNQYLERKVRRITDRTVWALTEQLKKGDFEPAGFEVTFSPADNLKAMKIPV 527

Query: 893 --SIGIHLTGFADRIDLLKSGFVD---ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKA 946
                IHL G  DRIDL + G +    I DYKTG        A   +  QL +   A   
Sbjct: 528 SKEEAIHLKGRIDRIDLCEDGDLLYLKIIDYKTGKTKFDLMEAYYGLQLQLVVYMDAALE 587

Query: 947 GSFSQIDCRKV--ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
               +   +KV  A +FY  +      D +   KK+   +E  +  L+ L 
Sbjct: 588 KEQRKHPDKKVVPAGIFYYNIA-----DPMVERKKEMDEEETKQAILEQLR 633


>gi|225872584|ref|YP_002754039.1| hypothetical protein ACP_0930 [Acidobacterium capsulatum ATCC 51196]
 gi|225793840|gb|ACO33930.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC 51196]
          Length = 905

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 101/719 (14%), Positives = 212/719 (29%), Gaps = 94/719 (13%)

Query: 366  NEREEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGIN----------- 412
            +ER E    A  LR  L+ N   + + L T        +     +               
Sbjct: 218  SERAEIEGCAQWLRERLEANPEARMAVLCTQVEARRGAIDRVFRQVLKPGSQSILTPHTE 277

Query: 413  ---IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
                + + G PL     +      L  +         + L+       G  E    R   
Sbjct: 278  GRVYEFTLGRPLGQQPVARAALLALRWLRHPLTQADASWLLLSGFLCGGAEE----RMIC 333

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
            A    A+R  ++   ++DL+ ++   +                          L D + Q
Sbjct: 334  ARADAAMREQESVAPLLDLQQVLAPTVRY-----------------------RLPDAVRQ 370

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             +   V +           +   W++L    L+ +      +  ++ ++ + +    L  
Sbjct: 371  QLQAGVQFADTHGFARRRRAPGAWSELARLALEAMGWPGGEEADSVQYQTQQRWEKVLEE 430

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                       +  +++ ++ R        P+   +  + ++G +E+    FD +   G 
Sbjct: 431  VARLDLHEEAMSYEDFMALLERQSMDTLFAPESLDAP-VQVMGPMEAAGQEFDGVWFLGT 489

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTA---EKYIGQAAHDFEMANGTRHLIYTRSLREN 706
             +  WP     +P L   +Q    +  A   + +         +      +I + +   +
Sbjct: 490  TDAQWPAAGRPHPLLPLAVQRSAGMPHAQRDDDWQLAQHVTERILKSAGEVICSYARHNS 549

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
            +     S                 +  RGQ  +  T  +     +               
Sbjct: 550  DGELRLSSL---------------MAGRGQEIVLDTVAISAAESELESYEDAGLVSFADG 594

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
                    +K     P+  +A R L+   +   +   D   RG L H ++     +   +
Sbjct: 595  VAPGGAELLKDQAACPFRAFASRRLRATELRESQWGLDAMQRGNLLHEVLRRFWTEEEPR 654

Query: 827  NTPEINHLMKQIIDSHFEK------ENLPPHIDII-------------WRHLFHKISHSF 867
                +  L + ++D    +      E +   +  +                        +
Sbjct: 655  RIDGLEALRQTMLDGQLGEVLRVHTERVFARLRQLAGEDRWMGAYLDAEEQRLRLRLEEW 714

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKK 926
            L +E K +               +    + L   ADRID L+ G   + DYKTG+  PK 
Sbjct: 715  LRYEMKRRP-FVVEACERNLG-PVRVGSLELRLKADRIDRLEDGSHLLIDYKTGNVEPKA 772

Query: 927  ETAQKLIDPQLSLEAAA-----LKAGSFSQIDCRKVANLFYIR--LKQKFKIDCITNDKK 979
               ++  +PQL L A       +    F++I   +V    ++R    Q F  +       
Sbjct: 773  WEGERPEEPQLPLYAVHGGVEDVSGVVFAKIRAGEVQFAGHLRDAAAQLFANEEDCGKSL 832

Query: 980  KYSADELSEKSLKN-LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
            K   ++  + + +  + E+      GE          EK+        L R+ E     
Sbjct: 833  KIPYEDAMQDAWERAIAELAEEFARGEA--AVKPTHGEKTCQYCPLPSLCRIHELSALD 889


>gi|229166074|ref|ZP_04293836.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH621]
 gi|228617383|gb|EEK74446.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH621]
          Length = 1166

 Score =  164 bits (414), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 105/947 (11%), Positives = 238/947 (25%), Gaps = 151/947 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 102  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDTHSSSAEQKLLANKVYDL 161

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L+         Y   L+   ++         I I G     P    ++  
Sbjct: 162  QLLYDDFERALIGKYL-DSEDYLQLLIEKLSDS-EYVKGAEIYIDGFHSFSPQELEIVRG 219

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +            + ++     I+ E
Sbjct: 220  LMRLGTRVTITLTIDEKTLAQPVNELDLFYETTLTYE---------RIKQVAREEKIEIE 270

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 271  KTIPLMEQ-----PRFHSPALAHLETHYEARPNEKYHGE---------ASVTISTAANLR 316

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   D   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 317  AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                 + S L  I     + A+   VK  L       K       +  E   L       
Sbjct: 377  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDARKEAMREEMDEFENYCLAYGVQGK 436

Query: 484  DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522
                    +  R                         ++    P  + +   +     + 
Sbjct: 437  RWTSEDPWMYRRYRSLDDASEMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +         L  +D  ++    +  +            
Sbjct: 497  MCEAVYLFLEELDVPKKLEELRVRAEENGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKM 556

Query: 577  FEEEGKTLSSLFSKIIETGSCIK---------ANAIEWIDIITRLIDGETVKPKIEK--- 624
                   + S   + ++  +             +     DI    I G            
Sbjct: 557  SLSMFTEVMSTGLEALQFANIPPSLDQVLVANIDHSRLSDIKATFIIGVNEGVIPAAPMD 616

Query: 625  -------------SSTLFILGTLESRLLNFDTLI---LGGLNEGVWPKNTAKN----PFL 664
                         ++ + +  T    LL    ++   +   +E ++      +      L
Sbjct: 617  EGMLSDEERNVLTAAGIELAPTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLL 676

Query: 665  SRVMQSDLNLKTAE--------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
            +      +     +             +  +      T  +  +  +++           
Sbjct: 677  ASSFIKKIKRMFPDVKESFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 730  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTDVSRDLYGDTIKG 789

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------I 820
            S S ++      YA +A+  L L     F    D  D G LFH  +  +           
Sbjct: 790  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADKLLRENRTW 847

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                 K    ++ L+ + I    +++ L       +      +I    S +  E    S 
Sbjct: 848  ADLSIKECEHLSALVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSG 907

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRIDLLKSGF---VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D  +      + I DYK + 
Sbjct: 908  FVPVDLEVPFGMGGTGSLPPMEFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSS 967

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965
                       +  Q+      + + +     +      A + Y  +
Sbjct: 968  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGSTASPAGVLYFHI 1014


>gi|257085627|ref|ZP_05579988.1| exonuclease RexB [Enterococcus faecalis Fly1]
 gi|256993657|gb|EEU80959.1| exonuclease RexB [Enterococcus faecalis Fly1]
          Length = 1196

 Score =  164 bits (414), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 117/989 (11%), Positives = 261/989 (26%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELKIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQMENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALVLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLL---------------- 720
             I Q  +   +        L  T  S+++       S + + +                 
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 721  -------------VLGGTDFFDNLKKRGQC-------YLDWTRKLDYTTKQPHYKRP--- 757
                              +     ++R +        +L+  + L      P  K+    
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQPIAPLAKQVFES 787

Query: 758  ------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                            PL  +    S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|289422622|ref|ZP_06424464.1| ATP-dependent nuclease subunit B [Peptostreptococcus anaerobius
            653-L]
 gi|289156973|gb|EFD05596.1| ATP-dependent nuclease subunit B [Peptostreptococcus anaerobius
            653-L]
          Length = 1140

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 134/1008 (13%), Positives = 295/1008 (29%), Gaps = 102/1008 (10%)

Query: 49   IYVP---TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            I VP   T    ++L    +        I   + S   +    FT    L       +S 
Sbjct: 36   ILVPEKYTYEMEKKLSQRLLSQDDPNFRI--RVVSFSTLSNIVFTNVSGLKE---KKISR 90

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
              R + + R +      L      L               + L   L D++   +  +  
Sbjct: 91   SARTMLVYRALEKSEKDLKTFRPSLND-------------LGLVAKLLDLVIEFKQNDMD 137

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
             + +++L ++          D +      + + + +    S  G    L           
Sbjct: 138  VDYINSLSSKVDDRALASKLDDISRIYGAYEDLMQDKYMDSEDG--TVLFSRLIGSYEPL 195

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI---- 281
                I I   TG  P    ++  +        +    D     +      + ++ I    
Sbjct: 196  DGASIFIDEFTGFTPVQYLVIEKLILLSKKIYISLMTDMRNINSYRGVFAKTNSTIMKIN 255

Query: 282  --------TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
                               +Y     L FL+ +           + +   +  +S     
Sbjct: 256  KFCIDNKVKRLEDIRVDDEEYYKKDELRFLESEIRFFNPKIYTGDTIKSSNDELSIEEFG 315

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSA 390
             +  ++ N++  E  I         + +   +N   E   IA  +   +        +  
Sbjct: 316  NNKLNIDNSNDDELSIDKF-----GIKISSFENRHREVEYIASVILDLVKNKGYRFGQIM 370

Query: 391  LITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            + T D +    +       + IN  +   I   +      + S+L+       + ++ T 
Sbjct: 371  VATRDIDSYAHITKSIFDDYKINYFLDDKISAQSNPVLVFILSILDMKNTNYSYKSMFTY 430

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
            +K  +      +  L         +  RG K   D  DL   V+  +     +  V    
Sbjct: 431  LKSGILDLDGDDIALLENYVLANGI--RGKKWFEDRWDLP--VVHSVEDNPVDIEVQDRI 486

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
            +++ +   E  + L + +            + +S     ++       +  L      + 
Sbjct: 487  NKIKDLVMEPIIRLNEKLKG-----KNTLRDISSYLYEFTLDIGLDKKIVDLVETFERKE 541

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                   + +       +  +++E           +I  +     G  +         +F
Sbjct: 542  DNYRAREYSQAWNIFVDVLDEMVEFMGDEVIGIERYIKFLDLQFQGHELGIIPPSRDQVF 601

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL--------NLKTAEKYI 681
            I G    +  +   LIL G NEGV+PK  +    ++ + +S+L        +   ++ Y 
Sbjct: 602  ITGVDRMKNPDTRVLILIGTNEGVFPKMVSDTSLITEMDKSNLLEKGVKFDSDIVSKMYD 661

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
             +      M+     L  T    +    ++ +  L   +        +      Q Y   
Sbjct: 662  EEFLVYRAMSTARERLYITYPKGDVEGNSMMASSLVNKIRKIFPQISEEDLS-DQVYDIG 720

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYARRILKLDFIPH 798
             +  D        K PK    +         +S S++++  + PY+ +AR  L+      
Sbjct: 721  FKLGDREIDFSQDKTPKISIDIADLIYGTPIFSVSKLEKFSSCPYSYFARYGLRARPRD- 779

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDII 855
               +    D G  +H ++   +++  + +          + + +        L      I
Sbjct: 780  -VYEFSPMDAGNYYHKVLELFLRRIRSNDISWADVDLSYINREV-EVLGARILDARSSYI 837

Query: 856  ------WRHLFHKISHSFLEHEEK-----IQSSIEKIFVNIPAKMAIESIGIHL------ 898
                  +R++  +++ + ++  +          +    + +   +  E   I L      
Sbjct: 838  LNTSEKYRYMVRRLNRTLVDSIDAIGKQVRGGKLRPKGLEVTFGIKSELEPIRLNIDGAR 897

Query: 899  ----TGFADRIDLLKSGF-----VDITDYK-TGDNPKKETAQKLIDPQLSLEA-AAL--K 945
                 G  DR+D           + I DYK +  +   E  +  +  QL +   A L  K
Sbjct: 898  EGLVNGKIDRVDSYIDQETNTEYISIVDYKLSSHDIDLEMVEAGLQLQLFMYMNAILYSK 957

Query: 946  AGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
               F++     K A L Y R+K          D     A E  E   +
Sbjct: 958  RSEFTRPGIKLKPAALLYSRVKSPQVKLSDIGDLDDLVASEAPEILRE 1005


>gi|27467581|ref|NP_764218.1| ATP-dependent nuclease subunit B [Staphylococcus epidermidis ATCC
            12228]
 gi|57866487|ref|YP_188145.1| exonuclease RexB [Staphylococcus epidermidis RP62A]
 gi|81675093|sp|Q5HQJ5|ADDB_STAEQ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|81842984|sp|Q8CPU0|ADDB_STAES RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|27315125|gb|AAO04260.1|AE016746_50 ATP-dependent nuclease subunit B [Staphylococcus epidermidis ATCC
            12228]
 gi|57637145|gb|AAW53933.1| exonuclease RexB [Staphylococcus epidermidis RP62A]
 gi|329730534|gb|EGG66922.1| helicase-exonuclease AddAB, AddB subunit [Staphylococcus epidermidis
            VCU144]
          Length = 1159

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 142/1043 (13%), Positives = 298/1043 (28%), Gaps = 151/1043 (14%)

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            G +  E    + L            ++ L  A L ++  + +     D      L L  S
Sbjct: 59   GSLRTEVLHFERLSHRVFQEVGGLTEQRLSKAALEMMIFHIVQQHESD------LKLYGS 112

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL-AADFLKIASKYWTERLV 200
             A    L++ LA+ I   +      E L+ L              + + +  K    R+ 
Sbjct: 113  QAQYYGLSEKLAEQIQDFKKYNVTPEHLNQLIENHSIQTRTKHKLEDISLIYKQLESRMN 172

Query: 201  ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                ++    Q  +        +K  K  + I G         R++  +  H     VL 
Sbjct: 173  GEFITTEDSLQQFIEILSQSQWIK--KAEVFIDGFHNFSTLEYRIIEALVQHAKQVTVLL 230

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              D                           HP     K  + L             +   
Sbjct: 231  TTDGSH------------------------HPFSLFRKPSEVL------SHLEDIANRLN 260

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAISIAIALR 379
               +     +F   +  D++N +   + +    K   + V + E+ + REE   +A  + 
Sbjct: 261  INLNKTYFNTFYRYNNDDLKNLENGFDALQFTPKHHQNHVKIFESSSMREEINEVARRIL 320

Query: 380  ---MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                  D   +  A++  D + A   +  L  + I  +I     ++      +L SLL  
Sbjct: 321  KDVREADYKFRDIAILYRDESYAYLFESILPSYDIPFNIDTKKSMTHHPIMEMLRSLLEV 380

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I       A+  L K  +    F         + LE   L         +D     +D+ 
Sbjct: 381  IRSNWHINAMLRLFKTNVLTSQFKRSSYL--IDLLENFVLERGIYGKRWLDEDIFSIDQF 438

Query: 497  ATQKNNTHVPHWQSRLS-EEDKELAVLLVDHILQCITPLV---TYKTNKNSTCGNLSISD 552
            +     +H      +   +E  +L   +++ +L     +    T K    S   +L   +
Sbjct: 439  SRMGRKSHQLTEGHQALYKEVIKLKKNVINKVLYFEQAMNEAHTVKDYATSFYESLEYFE 498

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                 +T    + L    +      ++    L  +   ++      +    +++D+    
Sbjct: 499  LPSQLMTQRDELELAGLTEKAE-EIDQVWNGLIQILDDLVTVFDDQEMTLQQFLDVFDIG 557

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            ++        +    + I     +++ N   + + G+N+G+ P+  + +  ++   +  +
Sbjct: 558  LEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGMNDGILPQTVSSSSLITDEEKKYV 617

Query: 673  NL-------KTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNI-PTIASRWLQR---- 718
                      T++      A    +A       + ++ SL  N+      S +L +    
Sbjct: 618  EDNAHVELSPTSDILQMDEAFVCYIAMTRSQQSVTFSYSLMGNSGDEKEISPFLTQIKEL 677

Query: 719  --------LLVLGGTDFFDNLKKRGQ--------------------CYLDWTRKLDYTTK 750
                    L  L        ++   Q                     +LD    +    +
Sbjct: 678  FYDLEITNLQDLHKAQPLLMMQHSHQTKIQLFEYLRGWLDHEDIDYRWLDAYLAIRDDDQ 737

Query: 751  QPHYKRPKPF----------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                                        L  +    S S  +     P+  YA   L+L+
Sbjct: 738  LNQGLDYLTTSLTYDNETVQLNEILSQQLYGKTINASVSRFEGYQQCPFKHYASHGLRLN 797

Query: 795  FIPHFKKDPDRTDRGTLFHNII----TELIKKRINKNTPEINHLMKQIIDSHFEK----E 846
                 K +    D G +FH+++      +     N +T  I  L K+ ++    K     
Sbjct: 798  ER--TKYELQNFDLGDIFHSVLKYISDRIYGDFKNLDTKNIQSLTKEALELILPKVQFNL 855

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK--------------MA 890
                            I  + L+  +     S           +              + 
Sbjct: 856  LNSSAYYKYLSKKIGSIVETTLKALKYQGEYSKFVPQRFETGFRKSPKNKGELVAQPLIT 915

Query: 891  IESIGIHLTGFADRIDLL--KSGFVD-ITDYK---TGDNPKKETAQKLIDPQLSLEAAAL 944
             + I I++ G  DRID           I DYK   +            +  Q+      +
Sbjct: 916  NQGIPINIRGQIDRIDTYTKGDHSYVNIIDYKSSESSATLDLTKVYYGLQMQMMTYMDIV 975

Query: 945  ----KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
                +    + I   K   L Y  +    +             D+  +  +KN    ++ 
Sbjct: 976  LQNKERLGLTDI--VKPGGLLYFHV---HEPRIKFKSWADIDEDQFQKDYIKNFK--MSG 1028

Query: 1001 LQNGEQPFISHLRLSEKSNIQSE 1023
            L N +Q  +  L +  +    S+
Sbjct: 1029 LLNRDQEVLDALDIRLEPKYNSD 1051


>gi|315221763|ref|ZP_07863677.1| ATP-dependent nuclease subunit B [Streptococcus anginosus F0211]
 gi|315189149|gb|EFU22850.1| ATP-dependent nuclease subunit B [Streptococcus anginosus F0211]
          Length = 1092

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 120/939 (12%), Positives = 252/939 (26%), Gaps = 135/939 (14%)

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E  L +           + L ++   ++  +    DL  L  ++        AD +KI
Sbjct: 99  MEEHDLQVYGGIRTDAQFIQQLVELYHELQEAQMTVADLDYLDEDE------KKADLIKI 152

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                 +       S       A     A+   +     ++I G T      A L+  + 
Sbjct: 153 LQAVMHQLNQSEFTSESNIMAFANHIIAADVDKELQGLALVIDGFTRFSAEEAYLVELLH 212

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
               G  ++ G   +     +     +     +S           L  L D   +K E  
Sbjct: 213 R--KGVEIVIGA--YASEKAYRATFREGNLYQASVDF--------LRHLADKYKVKPEYR 260

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                        S+    +F           D  + ++   ++  S V +    N++EE
Sbjct: 261 P------------SIQPDDAFGKISKLLESRYDFSDVELELTEQDRSHVQIWSTVNQKEE 308

Query: 371 AISIAIALRMSLDE--NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHS 427
              +A ++R  + +    K   ++  D    R        ++ I   +     ++     
Sbjct: 309 LEYVAKSIRQRVHDGARYKDIRVLLGDVEAYRLQLKTIFDQYQIPFYLGRSESMAHHPLV 368

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             + SL+           +  LVK  L                 EL          D+  
Sbjct: 369 QFIESLVRLKRYNFRTEDLLNLVKTGLYG----------RLTQEELDLFEQYIRFADVKG 418

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
           +     D    Q     + H      +    L              L  +         +
Sbjct: 419 ISKFSKDFTHNQHQKFDLIHINQLRKKIVTPLLEFFKSRSQTATGLLQKFHHFLTEIAFS 478

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            + +     T                    EE  K    +  +     S  K    +++ 
Sbjct: 479 QNFASLVDFTN------------PQDQERQEEVWKAFCHVLEQFASVFSANKVKLDDFLT 526

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
           ++   +     +        + +        L+   +   GL +  +PK       LS  
Sbjct: 527 LVQSGMLLSNYRTIPATVDVVTVQSYDLIEPLSSPFVYAVGLTQDYFPKIAQNKSLLSDE 586

Query: 668 MQSDLNLKTAEK-------YIGQAAHDFEMA----NGTRHLIYTRSLRENNIPTIASRWL 716
            +  LN  T E              + F         T  L+ +     N I    S +L
Sbjct: 587 DRLRLNEATDEHSELLIAAQENLQKNRFVALSLLNAATERLVLSTPQIVNEIENNISPYL 646

Query: 717 QRLLVLGGTDFFDNLKKRG--------QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
             L         +  + +         +  L    +L+           +      +   
Sbjct: 647 LELHERPIELPIEVKRPQATSDDIGTYRALLARVIELNQGDIDRERSLTEKEQTFWSVVV 706

Query: 769 T-----------------------------------------YSFSEIKQLINDPYAVYA 787
                                                      S S + +   + YA + 
Sbjct: 707 RVLRKKLESEGISIPNVTSSLETETLSTQTLQVLYLPHQAFQLSTSALTEFYRNQYAYFL 766

Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEK 845
           + +L L         PD    G   H +  ++++++ +++         Q    ++ FE 
Sbjct: 767 KYVLALQEEMTIH--PDARSHGNFLHRVFEKVMQEQSSESFDHRLEKAIQEASQEAEFEA 824

Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAI-ESIGIHL 898
                   +    +    + +      +    +E I             + + +   + +
Sbjct: 825 LYTENAEALFAHEVLLDTARAT-GRVLERNDLVETIQEEAVFGQEETNVLTLSDGRNLQI 883

Query: 899 TGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
            G  DRID L+  G + I DYK+   N   +     ++ QL     ALK   ++  D  +
Sbjct: 884 RGKVDRIDRLRSDGSLGIVDYKSSDTNFDFQKFFNGLNSQLPTYLMALKQEKWAN-DEVQ 942

Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                Y+++        +    K  S  +  ++++KNL 
Sbjct: 943 TFGAMYLQMAN-----PLVPLAKTKSQGDAVKEAMKNLE 976


>gi|51893312|ref|YP_076003.1| ATP-dependent deoxyribonuclease subunit B [Symbiobacterium
           thermophilum IAM 14863]
 gi|81388507|sp|Q67MD4|ADDB_SYMTH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|51857001|dbj|BAD41159.1| ATP-dependent deoxyribonuclease subunit B [Symbiobacterium
           thermophilum IAM 14863]
          Length = 1165

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 108/939 (11%), Positives = 233/939 (24%), Gaps = 132/939 (14%)

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK----DLYPESPLSL 138
                 +   L       PP+S++ + + L  L+   R+ L    +      + E     
Sbjct: 65  SFQRLAWRVSLKAGGLALPPLSDLGKQMVLRALLEKKRDDLRLFHQVADKPGFIERVAGS 124

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                +     ++L   +  +E E      L                  L +        
Sbjct: 125 IRELRSYRQGPESLRRQLSQLEAEGLGETSLG------------AKLHDLALVMDELRSY 172

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
           +      +     + ++ A  E         + + G  G  P    ++  V        +
Sbjct: 173 IE--GRFTDPDEYLTVLAARLEESRLLEGAEVWVDGFNGFTPQELAVLGAVMRSARQVHI 230

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
              +                +     +   ST+ Q  L +L     +  +    L     
Sbjct: 231 SLCIPPGQL----YKAGGHHSPSDLFHPVLSTYDQ--LMQLAAESGVAVDPPLYLNEPLR 284

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                       F            +     P        +AL+EA N REE  + A  +
Sbjct: 285 ------------FRGAPELAHVERYLFRQSAPAWPGAPERIALVEAQNRREEVAAAAREI 332

Query: 379 RMSLDENK---KKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLL 434
              + E     ++ A++  D      +   L    GI   I     ++      +L + L
Sbjct: 333 LRLVREEGLRFREIAVVARDLEGYGDLAATLFAEHGIPAFIDRRRTVAHHPLVELLRAAL 392

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
             + +   +  +   +K  L      E  L         +  R  +       L+   L+
Sbjct: 393 EVVVQDWAYGPVFRYLKTDLTGVSRAEIDLLENYVIEHGIRGRAWQQQEPWQYLRRYTLE 452

Query: 495 RIA--TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
             A         +     R+        +     + +   P  T +         L    
Sbjct: 453 EDAVPAGPAQQALLDEIHRIRRRATAPLLAFQRRLQRRGRPGPTVREITTYLFQLLDDLK 512

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
             +               +      E+    +  LF +I+E       +   ++ +++  
Sbjct: 513 VARQLEAWKAEAEQRGDLETAR-EHEQVWTRVLELFDQIVEGLGDQVLSPKVYLQVLSAG 571

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           +DG  +         + +     SR       ++ G  E  +P   A++   +   +  L
Sbjct: 572 LDGLKLGLIPPGLDQVIVGTVERSRHAGVRATLILGATEKDFPPQPAEDAIFTDRERERL 631

Query: 673 -------NLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLREN-NIPTIASRWLQRLLVLG 723
                     + E+   +    +         L  +  L +        S  + R+  L 
Sbjct: 632 KQSGLDVGPTSLERLFQEQFLTYVALTRGSDFLWISYPLADESGRAAAPSPVVGRMRRLF 691

Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR-----------PKPFPPLEAQPRTYSF 772
                               ++    +                  +P      Q      
Sbjct: 692 PELKPRPAAPPAPDAEAAVAQVATPRQLAAAVARALRRARSGYAVEPHWLDLYQCIVLDP 751

Query: 773 SEIKQ----LINDPYAVYARRILKLDFIP------------------------------- 797
              ++    L    Y  + RR                                       
Sbjct: 752 DLHREGAAVLAAVGYEEWLRRRGTPVGRELARLLYGDRLVTSVSRLEAFLSCPFRHFAGY 811

Query: 798 ------HFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFE 844
                   +      + G  +H  ++  +++              E    M  IID    
Sbjct: 812 ALRLQGRAEFTVSAPEFGLFYHAALSLFVRELERDGLAWDTLTPDEAWRRMDSIIDRLAP 871

Query: 845 KE----NLPPHIDIIWRHLFHKISHSFLEHEEKI--QSSIEKIFVNIPA----------K 888
           +      L          +  +   S L++  +         + V +P           +
Sbjct: 872 RLQSEILLSSPQHRYLLRVIRRTLQSSLDYLSEHVLHGEFRPVAVEVPFGEEMDGLPPVE 931

Query: 889 MAIESIG-IHLTGFADRIDLLK--SGFV--DITDYKTGD 922
           + +   G + L G  DR+D L+   G     + DYK+G 
Sbjct: 932 VDLPGGGRVLLRGRIDRVDALEGRDGRWYVRVIDYKSGR 970


>gi|319401755|gb|EFV89963.1| ATP-dependent nuclease subunit B [Staphylococcus epidermidis FRI909]
          Length = 1156

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 136/990 (13%), Positives = 281/990 (28%), Gaps = 143/990 (14%)

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK-YGMWWLLAADFLKIA 191
            ES L L  S A    L++ LA+ I   +      E L  L +            + + + 
Sbjct: 104  ESDLKLYASQAQYYGLSEKLAEQIQDFKKYNVTPEHLDQLIDNHSMQTRTKHKLEDISLI 163

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             K    R+     ++    Q  +        +K  K  + I G         R++  +  
Sbjct: 164  YKQLESRMNGEFITTEDSLQQFIEILSQSQWIK--KAEVFIDGFHNFSTLEYRIIEALVQ 221

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
            H     VL   D           +    ++   ++   +H +    +L   L+    +  
Sbjct: 222  HAKQVTVLLTTD----------GSHHPFSLFRKSSEVLSHLEDIANRLNINLNKTYFNTF 271

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                  +     +   +  F P                       + V + E+ + REE 
Sbjct: 272  YRYKNDDLKNLENGFDALQFTPKHHQ-------------------NHVKIFESSSMREEI 312

Query: 372  ISIAIALR---MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
              +A  +       D   +  A++  D + A   +  L  + I  +I     ++      
Sbjct: 313  NEVARRILKDVREADYKFRDIAILYRDESYAYLFESILPSYDIPFNIDTKKSMTHHPIME 372

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            +L SLL  I       A+  L K  +    F         + LE   L         +D 
Sbjct: 373  MLRSLLEVIRSNWHINAMLRLFKTNVLTSQFKRSSYL--IDLLENFVLERGIYGKRWLDE 430

Query: 489  KSLVLDRIATQKNNTHVP-HWQSRLSEEDKELAVLLVDHILQCITPLV---TYKTNKNST 544
                +D+ +     +H        L ++  +L   ++D +L     +    T K    S 
Sbjct: 431  DIFSIDQFSRMGRKSHQLTEEHQALYKKVIKLKTNVIDKVLYFEQAMNEAHTVKDYATSF 490

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
              +L   +     +T    + L    +      ++    L  +   ++      +    +
Sbjct: 491  YESLEYFELPSQLMTQRDELELAGLTEKAE-EIDQVWNGLIQILDDLVTVFDDQEMTLQQ 549

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            ++D+    ++        +    + I     +++ N   + + G+N+G+ P+  + +  +
Sbjct: 550  FLDVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGMNDGILPQTVSSSSLI 609

Query: 665  SRVMQSDLNL-------KTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNI-PTIASR 714
            +   +  +          T++      A    +A       + ++ SL  N+      S 
Sbjct: 610  TDEEKKYVEDNAHVELSPTSDILQMDEAFVCYIAMTRSQQSVTFSYSLMGNSGDEKEISP 669

Query: 715  WLQR------------LLVLGGTDFFDNLKKRGQCYLDWTRKLD-----YTTKQPHYKRP 757
            +L +            L  L        ++   Q  +     L                 
Sbjct: 670  FLTQIKELFYDLEITNLQDLHEAQPLLMMQHSHQTKIQLFEYLRGWLDHEDIDIRWLDAY 729

Query: 758  KPFPPLEAQPRTY-------------------------------SFSEIKQLINDPYAVY 786
                  +   +                                 S S  +     P+  Y
Sbjct: 730  LAIRDDDQLNQGLDYLTTSLTYDNETVQLNETLSQQLYGKTINASVSRFEGYQQCPFKHY 789

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNII----TELIKKRINKNTPEINHLMKQIIDSH 842
            A   L+L+     K +    D G +FH+++      +     N +T  I  L K+ ++  
Sbjct: 790  ASHGLRLNER--TKYELQNFDLGDIFHSVLKYISDRIYGNFKNLDTKNIQSLTKEALELI 847

Query: 843  FEK----ENLPPHIDIIWRHLFHKISHSFLEHE--EKIQSSIEKIFVNIPAK-------- 888
              K                     I  + L+    +   S           +        
Sbjct: 848  LPKVQFNLLNSSAYYKYLSKKIGSIVETTLKALKYQGDYSKFVPQRFETGFRKSPKNKDE 907

Query: 889  ------MAIESIGIHLTGFADRIDLLKSGF---VDITDYK---TGDNPKKETAQKLIDPQ 936
                  +  + I I++ G  DRID    G    V+I DYK   +            +  Q
Sbjct: 908  LVAQPLITNQGIPINIRGQIDRIDTYTKGDYSYVNIIDYKSSESSATLDLTKVYYGLQMQ 967

Query: 937  LSLEAAAL----KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
            +      +    +    + I   K   L Y  +    +             DE  +  +K
Sbjct: 968  MMTYMDIVLQNKERLGLTDI--VKPGGLLYFHV---HEPRIKFKSWADIDEDEFQKDYIK 1022

Query: 993  NLI--EIVTLLQNGEQPFISHLRLSEKSNI 1020
            N     ++   Q     F   L     S+I
Sbjct: 1023 NFKMSGLLNRDQEVLDAFDIRLEPKYNSDI 1052


>gi|307278852|ref|ZP_07559915.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0860]
 gi|306504523|gb|EFM73730.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0860]
          Length = 1196

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALVLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTSDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEALLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIINQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|313205879|ref|YP_004045056.1| hypothetical protein Riean_0381 [Riemerella anatipestifer DSM 15868]
 gi|312445195|gb|ADQ81550.1| hypothetical protein Riean_0381 [Riemerella anatipestifer DSM 15868]
 gi|315022191|gb|EFT35219.1| hypothetical protein RAYM_05300 [Riemerella anatipestifer RA-YM]
          Length = 888

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 165/447 (36%), Gaps = 57/447 (12%)

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
               +  +   ++ +++  E+V  + E  S L ++G LE+RLLNF+ +IL   NEG  P  
Sbjct: 459  FDVSIEDLEVLVNQMVSTESVDFQGEPLSGLQVMGLLETRLLNFENIILLSTNEGKLPLG 518

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTR-SLRENNIPTIASRW 715
             ++N +L   ++ +  L T  +  G  A+ F        H+     +L         SR+
Sbjct: 519  NSQNTYLPFDVRKNFGLNTFLENDGIYAYHFYRLLQDAHHIHLLYNALSSGVNTGEKSRF 578

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY---KRPKPFPPLEAQPRTYSF 772
            + ++ +         +                  +       K P+    L+      + 
Sbjct: 579  ITQIEMESPHQVQKIM----------VENESQPVEVLPMVVSKTPQVMERLKEWKHNIAA 628

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----KN 827
            S +   + +P   YA+ +LK+      +++    + G L H  +  L  K        ++
Sbjct: 629  SHLTTYLYNPIDFYAKVVLKIKETSEIEEELSLRNYGNLVHYALEFLYDKLKGKILTPQD 688

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDII-----WRHLFHKISHSFLEHEEKIQSSI---E 879
                   + + ++   +     P           + +  K+    L+ + ++ SS    E
Sbjct: 689  LEWAITQIDESVEFAIKTLKHQPEFYERGMNFVHQQMAKKVIGDILKLDLELVSSGNTLE 748

Query: 880  KIFVN-----IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP------KKET 928
             + +      +  K++ + + +   GF DRID L +G + + DYKT            + 
Sbjct: 749  ILDLEKEIKDVKFKVS-DELEVAFKGFIDRIDRL-NGNLRVIDYKTAKTKNLRLKISDKN 806

Query: 929  AQKLI-------DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
             + L+         QL + A A+  G  S+   + ++   +           ++   +  
Sbjct: 807  RETLLKNKDYKQALQLCIYAYAM--GQLSEFLGKDISCGIW-------SFAEVSRGVQML 857

Query: 982  SADELSEKSLKNLIEIVTLLQNGEQPF 1008
              D     ++ ++  I+T + N +  F
Sbjct: 858  EIDGDLSDAMVSISSIITEILNPDIDF 884



 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 70/240 (29%), Gaps = 20/240 (8%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+   I +P KR +  ++    +   K S +LP   ++ +++ +      +   +L   
Sbjct: 17  DLSRFNIVLPGKRPVVFIKDILKKQ-KKYSGLLPQFSTIEELIRDISGYQEIKGISLWLF 75

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
             N+ R L  A     +                 +L     + +  + +   +++ +  E
Sbjct: 76  AYNVYRQLFPAEDFGQFLK------------WFPTLLKDWDDILKFSDSDEAVLEYMFDE 123

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT---ERLVELNASSPVGYQIALMRAEA 219
           E+       L  E          +F +  + +     + L     ++         +++ 
Sbjct: 124 ERIKNWGETLGEEDNAR--QRNLNFWRKMTTFLPLLKKELKAKQWATSGMLHQEA-KSKI 180

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
           +   + T    +  G     P    L+  +             D +          +   
Sbjct: 181 KLFAEQTSEQYVFCGFNAFTPVEELLVRQLLQWDKAQCFF-QADEYYIKDKRQEAGQFLR 239


>gi|283780045|ref|YP_003370800.1| ATP-dependent nuclease subunit B-like protein [Pirellula staleyi
           DSM 6068]
 gi|283438498|gb|ADB16940.1| ATP-dependent nuclease subunit B-like protein [Pirellula staleyi
           DSM 6068]
          Length = 967

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 104/634 (16%), Positives = 217/634 (34%), Gaps = 43/634 (6%)

Query: 365 DNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
           D   ++A ++A  LR      +  + A+   D  +  +++ EL + GI     +G  +  
Sbjct: 269 DGPADQAAAVADWLRALGGKYHSDEIAIGVPDEAIVSQLERELEQSGIKSRAFSGTTVGQ 328

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
           TL S +L +++  +     +  +A+LV+HP        K  +     ++ V      + Y
Sbjct: 329 TLPSLLLDAIVAYVL-RERYDELASLVRHPDLHDWIERKSAADGALDVDPV---AALDEY 384

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
                 + + + +  ++ +T +P   S  S   +     +   +   +  +         
Sbjct: 385 YGEHYSARLDEELLAREASTTIPEGLSPSSAAHRRRTRSVARSVKTTVDLVHRLIAPLR- 443

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL-SSLFSKIIETGSCIKANA 602
                 ++ W +     L  V                 +       +         K + 
Sbjct: 444 -TSKQPLARWGEALRAILLEVYHGRQLDRRIPRDRMLLEATSMLAGALDAPAKVPAKLSP 502

Query: 603 IEWIDIITRLIDGETVK---PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              +     L+    ++   P   ++  + +LG LE  L +    I+   NEG  P    
Sbjct: 503 AVSLSAAIDLLVSPVLRSNIPPPAEAGAIELLGWLELPLDDARAAIITTFNEGYIPAGEG 562

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE-NNIPTIASRWLQ 717
              FLS  +++ L ++ A++ + + A    M   ++  L+   + R+    P   SR L 
Sbjct: 563 SAMFLSSELRTTLGIQDAKRRVARDAFALFMLAESKAELLLVVAHRDVEKNPLAPSRLLF 622

Query: 718 RLLVLGGT----DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
               L         F  L       +    +L   +       P    P+E     +S S
Sbjct: 623 ATEPLEAARRGVQLFSALPATPTRRIALAPQLTRLSSGFQIPLPDTSLPIEDN---FSVS 679

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------ 827
           + K  +  PY  Y R +L+L  +     + +    G+L H+++    +    ++      
Sbjct: 680 QFKAYLACPYRFYLRHVLRLSSMNDAADELEPRGFGSLIHDVLQSFGRSDEVRDSTHSTD 739

Query: 828 -TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVN- 884
               +   ++ I+ +   +      +  +          +F + +    +     ++   
Sbjct: 740 IFDFLAASLQGIVSARLGERACRAAVR-VQVEQIRSRLQAFAKWQAARTATGWRIVYTED 798

Query: 885 ----IPAKMAIESIGIHLTGFADRIDLLKS-GFVDITDYKTGDNPKKETAQ-------KL 932
               +   M I+   + L G  DRID       + + DYKT D P    A        + 
Sbjct: 799 LDKQLTGTMTIDDKPVILRGRIDRIDRHDDTQTLAVLDYKTADTPNAPKAAHRKPQSGEW 858

Query: 933 IDPQLSLEAAALKAGSFSQID-CRKVANLFYIRL 965
           +D QL L    L A +    D   +   L YI+L
Sbjct: 859 VDLQLPLYRHLLPAAAKESADTSHRQLQLGYIQL 892


>gi|255976208|ref|ZP_05426794.1| exonuclease RexB [Enterococcus faecalis T2]
 gi|255969080|gb|EET99702.1| exonuclease RexB [Enterococcus faecalis T2]
          Length = 1186

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 81   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 140

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 141  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 195

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 196  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALVLDKQYPHDLPDPRSLFYEAGQTY-- 253

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 254  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 298

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 299  PPLSTSDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 358

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 359  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 418

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 419  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 478

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 479  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 538

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 539  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 597

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 598  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 657

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 658  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 717

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 718  DDETTSLAHISTYRTLIGELTRLKRQRKETQEALLPFWLNMEKALMNQSIAPLAKQVFES 777

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 778  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 835

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 836  AATGEFFHEALDQFFKLLIINQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 895

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 896  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 953

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 954  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1013

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1014 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1042


>gi|300778444|ref|ZP_07088302.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
 gi|300503954|gb|EFK35094.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
          Length = 895

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 130/999 (13%), Positives = 287/999 (28%), Gaps = 160/999 (16%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L++  I +P KR I  +R    E     S  LP   ++ ++V       L+    L   
Sbjct: 17   DLSAFNIILPGKRPIVFIRQILEE--NHYSGFLPNFFTIEELVNNIAGQQLIQGIPL--- 71

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                   L    +         D   D     P        + +  + +   ++  +  E
Sbjct: 72   ------WLFSFDVYRSLNLIPRDDFSDFLKWFPTLQ-KDWDDILKFSDSDQAVLQYMFDE 124

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            E+  E    L  +           FL     +W      +N   P   +    +  A   
Sbjct: 125  ERIKEWAQDLGEDDEVPR----KKFLN----FWQN----MNVFLPALKERLQEKNWATSG 172

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            M        +A                                                 
Sbjct: 173  MIHEAAKAKVADF-----------------------------------------AKNTRE 191

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                           KL+  L    +                    K      T    + 
Sbjct: 192  EFVFCGFNAFTPVEEKLVRSLLQWNKAQCFFQADRYYFNDERQEAGKFLRNHKTWKEFDD 251

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402
            +     I +       + + E      +   +    +   ++    +A++  D NL    
Sbjct: 252  NRAFQWIEDDFNQPKKIKVYEVSGNVTQTKVLPEIFKEINNKTYSNTAVVLLDENLLPAS 311

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
               +     N++I+ G PL      S   ++                             
Sbjct: 312  LDVMH-GVDNLNITMGFPLKNL---SFSNAIKRLF------------------------- 342

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                          +  + +      + +        K+           ++ ++   V 
Sbjct: 343  -----------YLQKQLEKNKSSYYYRDVFPILEELPKSVEDEQIINDFKAKVEERNIVY 391

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            +   +L  +   ++Y        G  +  D        ++ + +D+ +      FE   +
Sbjct: 392  ISHKLLHELLSGLSYFGLLQKAPGTNAYLDMLIAFCQQVKWLEIDDIQYENVSHFENAFR 451

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             + +       T   I+        +I + I+ E++  + E    L I+G LE+RLLNF+
Sbjct: 452  IIKNQL-----TPYNIEIKMETLEILINQHINSESIDFQGEPLRGLQIMGLLETRLLNFE 506

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTR 701
             +IL  +NEG  P   ++N ++   ++   +L T  +     A+ F       +++    
Sbjct: 507  NVILLSVNEGKLPLGNSQNTYIPFDIRRFFDLHTFLENDSIYAYHFYRLIQDAKNVHLLY 566

Query: 702  -SLRENNIPTIASRWLQRLLVLGGTDFFDNLKK-RGQCYLDWTRKLDYTTKQPHYKRPKP 759
             +L         SR++ ++ +    +    + +   +       ++  T           
Sbjct: 567  NALSSGVNTGEKSRFITQIEMESSHEIEHLIIENSSEPIATQAIEISKTQIVQE------ 620

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
               LE   +  S S +   + +P   Y  +IL        +++    + G L H  + E+
Sbjct: 621  --RLEKWKQKVSASHLTSYLYNPIDFYLSKILNTSETDEIEEELSVKNYGNLVHYSLQEV 678

Query: 820  IKKRINK-----NTPEINHLMKQIIDSHFEKENLPPHIDI-----IWRHLFHKISHSFLE 869
             +    K     +       + + I+   EK    P         I + +  K+  + L 
Sbjct: 679  YEMLKGKVLKESDLKNSVKAIDEYINIAIEKLKHQPEFYEKGMNYIHKAIAKKVIENVLN 738

Query: 870  HEEK---IQSSIEKIFVNIPAK-MAIESIG---IHLTGFADRIDLLKSGFVDITDYKTGD 922
            H+ +     + +E + +    + +     G   I   GF DRID L +G + I DYKT  
Sbjct: 739  HDLELIKQGNKLEIVDIERRFENIDFPLEGNDKISFFGFIDRIDKL-NGTLRIIDYKTAK 797

Query: 923  NP------KKETAQKLI-------DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969
                     ++   +           QL +    ++     +     +    +     + 
Sbjct: 798  IKNLNVKIDEDNVAEYFHNSDRKQALQLCIYHYVVQH--LPEFWGYPIETGIWSFADARK 855

Query: 970  KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
             +  +  DK         + +++ +  ++  + N +  F
Sbjct: 856  GMVSLQFDKGN------IDDAMRAVKSLILEILNPDINF 888


>gi|310826444|ref|YP_003958801.1| ATP-dependent nuclease subunit AddB [Eubacterium limosum KIST612]
 gi|308738178|gb|ADO35838.1| ATP-dependent nuclease subunit AddB [Eubacterium limosum KIST612]
          Length = 1123

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 116/899 (12%), Positives = 245/899 (27%), Gaps = 140/899 (15%)

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW-WLLAADFLKIASKY 194
           LS+    A  +   +N+   I  ++  E   EDL   ++E             ++     
Sbjct: 108 LSVYRRSAGKLGFLENICAFISELKQSEITPEDLETAESEVGEGRILSQKLKDIRKIYGA 167

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           +T+ L           +  L+ A+        +  I I G         R++  +A   +
Sbjct: 168 YTKLLGGERID--GDDRAKLLCAQIPKSDYLERSLIWIDGFHTFSNQDFRIIEALAAKAD 225

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
              +   LD                   +            + K+ + L  + E      
Sbjct: 226 CVTITLTLDPD------------KNAPDAPAFYVPGETLKRIEKMANDLGFEAEI----- 268

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                      + +         D    ++   +    ++   D+A+++  N   E    
Sbjct: 269 ---------VNLEAAVRPAVSGLDYLEQNLFALRPRPYKEEPGDMAVVQCKNIWNEVEKG 319

Query: 375 AIALRMSLDEN---KKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSIL 430
           A  +   + E     +   ++  D            + +GI   +     ++       +
Sbjct: 320 AQKIVELVRERDFRYQDIVVLAGDMETYGGAIKRAFSEYGIPFFMDDVKKVTENNFLEAV 379

Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            + L        +  I T VK   A     E         +    +RGN          +
Sbjct: 380 LAALETNRSHYAYEDIFTFVKTGFAPITPEEAQELENY--VIEYGIRGNAWEKPFDRPSA 437

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                +     +            +    +    D     +  L   K  +     + ++
Sbjct: 438 NEAVSLEALNASRERLMAPFMTLRKILRKSRTYADKTRSLVRFLEDIKAPETIDGLSEAL 497

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
            +                        + +    L  +F +I  T         E+I +++
Sbjct: 498 RER---------------GDFDSMGLYNQIWNILMEVFDQINSTMGGESTTLEEYISVLS 542

Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
                 TV     +   + I   + SR      L++ G+NEGV P N+     LS   +S
Sbjct: 543 GGFQSYTVGVIPNRQDVVNITDLMRSRHSEMKALLVFGMNEGVIPANSPSFNLLSERERS 602

Query: 671 DLN------LKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIA-SRWLQR--- 718
            L          ++    Q               L  + S+ +    TI  S  + R   
Sbjct: 603 QLRKQEMALQDNSDFRRAQEDFLLYSLFAAPSDYLYLSYSMADAEGSTIPVSPLIPRIQA 662

Query: 719 ----------LLVLGGTDFFDNLKKRGQ--CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                     L      ++      RG     +D  R+L Y       +  K       +
Sbjct: 663 VFPKLTVTSALENTLSKEWEAVATPRGTISSLIDHLRELRYGKGTVMPEETKRLWQAVGK 722

Query: 767 PR---------------------------------------TYSFSEIKQLINDPYAVYA 787
                                                      S S ++     P++ Y 
Sbjct: 723 WYDEDARYHTAFRQIQEALDYDGVDDCLSQGQAIRLFEPPIQASVSRLELYRKCPFSHYV 782

Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK-------RINKNTPEINHLMKQIID 840
                L  +P  + + +  D GT+ H++I  + K+         + +  + + ++  I+D
Sbjct: 783 AY--GLRPVPRQEYEVEPPDIGTVLHHLIDAVYKEAEREQVSVKDLSQEKTDAMVDAILD 840

Query: 841 S--------HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK--MA 890
                     F       ++    R +  +     ++H    +   +  +        + 
Sbjct: 841 ETLPQVRHQVFNSTGQYQYLGRKLRRVSKRTVRVLVDH--MRRGEFDFKYSEQQFSQILE 898

Query: 891 IE--SIGIHLTGFADRID---LLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAA 943
           +      + + G  DRID        FV + DYK+G            +  QL++   A
Sbjct: 899 LPSFEETVRVRGVIDRIDVYQREGDTFVKVIDYKSGNKTLNLAEIYYGLSLQLAVYMEA 957


>gi|315174631|gb|EFU18648.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX1346]
          Length = 1196

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 111/955 (11%), Positives = 248/955 (25%), Gaps = 147/955 (15%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYG----MWWLLAADFLKIASKYWTERLVEL 202
               + L  +   +     +  +L+    ++          L    L +    +  ++ + 
Sbjct: 125  GFIQQLFQLYQEMREGNIEIAELYPFLEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQY 184

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLP 260
               S       +++  +E+L       +  +I+G         +L+  +        V  
Sbjct: 185  GYES-----AEIIQHLSEYLQTVDLSNVQFVISGYQQFTARELKLIEVLMAQAGSVKVAL 239

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             LD   P  + +  +       +       H  Y LA+            K++  +S+ +
Sbjct: 240  VLDKQYPHDLPDPRSLFYEAGQTY------HQLYQLAR-----------QKQIPILSDYV 282

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
              + ++I+   L         +      +         + L  A+N +EE   +A  +R 
Sbjct: 283  EKKEVLITNPDLQGLNDYWIQSQEHLPPLSTTDWRGDGLFLWRAENVKEELTHVATEIRR 342

Query: 381  SLDENK---KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             + E     K+  ++T D +     ++       I + +   + +        + SL   
Sbjct: 343  LVVEEGYRYKEIQVLTRDLDCYENLLEPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAI 402

Query: 437  IFKLNDFMAIATLVKHPLAK--------------FGFPEKYLSRAKNALELVALRGNKNS 482
                  +  +   ++  L                +        R  +  E V L      
Sbjct: 403  HSYNYRYRDVLRFLRTELFMPMNQHATSEESLTDWLNQRNAWRRKVDITENVVLAYGYEG 462

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
            Y     K     R   +             S   ++    L+    Q +    T      
Sbjct: 463  YYWSQEKDWEFIRYDFEAEEQEDVATMEEESNAIRQSLQRLLPSYFQAMISAKTGLEAAT 522

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                 L  S                   +      E+    L SL  + +        + 
Sbjct: 523  VFYHFLLQSGVATQLKMWRLQAIEAGQLETAR-NHEQTWDALMSLLDEYVTVYGESSFDF 581

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
              + +I    ++G            + +     +R          G+ E ++P+      
Sbjct: 582  TTFQEIFVSGLEGLHYSKVPTAIDQVQVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKT 641

Query: 663  FLSRVMQSDLNLKTAE---------KYIGQAAH--DFEMANGTRHLIYTR-SLRENNIPT 710
             LS   +  +N    E         + I Q  +      ++    L  T  S+++     
Sbjct: 642  LLSDEERQTINDTLTENQYLRGTTGRKIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEV 701

Query: 711  IASRWLQRLLVLGGTDFFDNLK-----------KRGQCYLDWTRKLDYTTKQPHYKRPKP 759
              S + + +        F+  +                Y     +L    +Q    +   
Sbjct: 702  KPSPYFKNIQKDLNLPVFEKNETTIFDDETTSLAHISTYRTLIGELTRLKRQRKETQEGL 761

Query: 760  FPPLEAQPRTY----------------------------------------SFSEIKQLI 779
             P      +                                          S S ++   
Sbjct: 762  LPFWLNMEKALMNQSIAPLAKQVFESLTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFY 821

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--INKNTPEINHLMKQ 837
               Y  ++R  L+L     F         G  FH  + +  K      +N  E+      
Sbjct: 822  RCQYQYFSRYGLRLKERDVF--GLSPAATGEFFHEALDQFFKLLIMNQRNLSELTDQEVN 879

Query: 838  IIDSHFEKENLPPH-------------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++        L                I         K+  S+    +  +S +  +   
Sbjct: 880  LLAEEVLNSILGDARFSVLTTSSRMNYIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTE 937

Query: 885  IPA------------KMAIESIG-IHLTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKE 927
            +              ++ +++ G IH+ G  DRID L         + DYK+        
Sbjct: 938  VLFGQIAAKKGISGLELPLKNQGKIHVRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMT 997

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKY 981
             A   +  Q+          +   +    K A   Y+ +          +D ++ 
Sbjct: 998  EAYYGLAMQMLTYLDVALMDAVQLVGQEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|227832526|ref|YP_002834233.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
            ATCC 700975]
 gi|262183606|ref|ZP_06043027.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
            ATCC 700975]
 gi|227453542|gb|ACP32295.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
            ATCC 700975]
          Length = 1004

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 117/1065 (10%), Positives = 274/1065 (25%), Gaps = 184/1065 (17%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
              + + +  P+K +   LR E  E     +    +++S+  +                  
Sbjct: 18   DASGILVVAPSKESGSLLRRELAENLDDYAAQTSMVRSVHSLAFALLRQSSEEEL----- 72

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                 RL+  A    + R  L     D     P  +       +  A+ L D++      
Sbjct: 73   -----RLITGAEQDAVIRELLQGHAADRRGVWPEEM-RPALEYVGFARQLRDLLLRAIER 126

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                 DL  L        W+ A DFL+   +    + +  + S      ++ +    E +
Sbjct: 127  GLGPTDLEELGQRYGRPMWVAAGDFLREYER---TQALAGSHSYSAAELVSQVLLRPELV 183

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +     I++  +    P + +L++ +A      ++  G D       +           
Sbjct: 184  REHPWHTIVVDDAQLLDPTSGQLIAELAKTARLTVI--GGDPDQAVFAFRGA-------- 233

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                                      + + L     E   R     +   P   S + + 
Sbjct: 234  --------------------------NSEFLTTWKAENELRLSSTHRRPSPACVSVVDSR 267

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402
              L + +                     A ++         + +  + ++ +  ++    
Sbjct: 268  GTLRDVL---------------------ANTVRRRHLEDGVDWRDIAVIVRSTGDIGPAR 306

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
            +  L+           + L+       +   L A+    + + +  L+  P+        
Sbjct: 307  RTLLSAGVPVHINPTDVVLAEQRLVKAVLLALRALENELEPVELEDLITGPVGGADPVTL 366

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                          RG                    +  +  +P + + L+E ++ +   
Sbjct: 367  RRLIRGLRRWKPEQRG---------------MNTLRELLDGELPDFNNLLTEREEAILAR 411

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            +   +    T L      +         +                  +   +L       
Sbjct: 412  IRGVLSAGRTALQEGAAVEEVLWEVWQATGLDTRLQAAALRGGAAGSQADRDLDAMMALF 471

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
              +  +++     S         + I  + +       +    + + IL    +    +D
Sbjct: 472  DAAGDYAERRPAASLESF----ILYITEQELPTGVRDRRSALPNAVEILTAHGAVGREWD 527

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------KYIGQAAHDFEMAN 692
            T+I+ G+ EG WP          +    DL  +             +   +         
Sbjct: 528  TVIVAGVQEGTWPSVGETGSLFGQEDLIDLLDRGITPGTPVSHVSGRLAEERRLFHVATT 587

Query: 693  GTRHLIYTRSLRENNIPT--IASRWLQRLLVLGGTDF--FDNLKKRGQCYLDWTRK---- 744
              RH +   ++           SR++   L   G D       ++ G+            
Sbjct: 588  RHRHRLLIVAVDSPEGDVVEEPSRFIDEFLSARGVDVPGAQARREAGKRLARQAWPRELG 647

Query: 745  ----------------------------LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
                                        L         +R    P      R+ +  ++ 
Sbjct: 648  LEVPEPSPVTLHSGASADEDIDPLDVSVLSVPAFVAQLRRCATDPEAGEAERSQAVRQLA 707

Query: 777  QLI------NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            +L         P   +A R +  +           +    L    +  ++ + +  ++  
Sbjct: 708  RLAEAGVPGAHPDQWWAARDVASELPLRGSDTVSPSRVDALLSCPLNAVLGQLVEDDSAN 767

Query: 831  INHLMKQIIDSHFEKEN---------------------LPPHIDIIWRHLFHKISHSFLE 869
            IN L   +  +  E                         P          F ++      
Sbjct: 768  INLLRGNLAHAFLEALGRGASTEPAKRLVLDAFDSLLEGPAWHREASLADFERLIDRTHS 827

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKET 928
                  +S+E + V +P  + I    + + GF DR+         + D KTG   P  ++
Sbjct: 828  WVLSSSTSLEPVGVEVPVTVDI-GPDVTIRGFIDRLAKAGE-DYVVVDLKTGTKVPSADS 885

Query: 929  AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID--------------CI 974
            AQ   + QL     AL  G               + ++    +                +
Sbjct: 886  AQN--NTQLMTYQLALAHGELVTAPVEPGGESQAVSIRTGDGLPRGGGVLVYPRSTTASV 943

Query: 975  TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
            +  ++     E  E+  + L  +V  L+  +    +         
Sbjct: 944  STREQATKPPEELEEFAQALPSLVAELRGPDL--TARENADCDRC 986


>gi|291548282|emb|CBL21390.1| ATP-dependent nuclease, subunit B [Ruminococcus sp. SR1/5]
          Length = 809

 Score =  163 bits (412), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 85/715 (11%), Positives = 197/715 (27%), Gaps = 104/715 (14%)

Query: 361 LIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDIS 416
           +  A N ++E    A  +   + E      + A+IT +      +     T  GI   I 
Sbjct: 1   MFSAVNPQKEMEEAARRIARLVREKGCRYGEIAVITGNLEEYGNLAKQVFTAAGIPYFID 60

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
               +          + L    +   + ++   ++  ++     E  L       E   L
Sbjct: 61  EKHTVLMNPFVEYFRAALEMAVQDFSYESVFRYLRCGMSCVTREEADLL------ENYVL 114

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                 +   D   + + R    ++   +   + R ++E +ELA+               
Sbjct: 115 ALGIRGFKKWDEVWVRIYRGMPPESIQRLNEIRQRFADETRELALSFKGGKKTVREYCTF 174

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                  +     +                 +  K     + +    +  L   ++E   
Sbjct: 175 LYEFAVRSQVQQKLKHQELKFKE--------QGDKAMEKEYAQIYGIVMELLDNMVEILG 226

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
               N  ++  ++   ++   V         + +     +RL +   L   G+NEG  PK
Sbjct: 227 EETVNRQDFRQLLETGLNQAKVALIPPSMDQVLVGDMERTRLKDIRALFFVGVNEGNIPK 286

Query: 657 NTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNI 708
           NT+    L+ + +              ++ +        +        L  +    ++  
Sbjct: 287 NTSGGGMLTEIDREFFKDQGIQLAPGPKELMNMQRFYLYLNMTKPRELLCLSFCQSDSQG 346

Query: 709 PTIASRWL-------------QRLLVLGGTDFFDNLKKRGQCY----LDWTRKLDYTTKQ 751
             ++  +L             ++   +        L      Y    L      D    Q
Sbjct: 347 KALSPAFLVSNIREMFPEMEIRQCGDMQEPMELLELPGISLDYFLRGLAGEAYQDNAVFQ 406

Query: 752 PHYKRPKPFPPL----------------------------EAQPRTYSFSEIKQLINDPY 783
             Y      P                                +   YS + +++     +
Sbjct: 407 ELYSWYLQSPEYRILVKKLTEASFSERPSDKIGKTVAKILYGEISPYSATRLERFAACAF 466

Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIID 840
           A + +  LK+      + +    D G + H  + +   +   +             +IID
Sbjct: 467 AHFLQYGLKVTER--AEYEFRAMDMGNVMHMALEKFAAEVRKEGLDWAELTEEERNRIID 524

Query: 841 SHFEKENLP--------PHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMA 890
           S  ++ +             +        +I     +   E+    +       +  +  
Sbjct: 525 SCLDQVSADYGNTILKSSARNEYMIERTRRILRRTVWALQEQLKHGAFRPEGFEVRFQG- 583

Query: 891 IESIGIHLTGFADRIDLLKS---GFVD--ITDYKTGDNP-KKETAQKLIDPQLSLEAAAL 944
                    G  DR+D+++      V   + DYKTG+           +  QL +     
Sbjct: 584 ---------GRIDRVDIMEEPENNRVYVKVIDYKTGNTSFDLLALYHGLQLQLMVYLDGA 634

Query: 945 KAGSFSQIDCRK--VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
                 +   R+   A +FY  +K     + I  D +  +   L +  +  L++ 
Sbjct: 635 LQVEKRKYPDREIVPAGVFYYNVKDPMIQEKIHADMESINEQMLKKMKMNGLVQA 689


>gi|332308914|ref|YP_004436764.1| putative DNA repair protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176243|gb|AEE25496.1| putative DNA repair protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 856

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 100/684 (14%), Positives = 186/684 (27%), Gaps = 94/684 (13%)

Query: 384  ENKKKSALITADRNLAR-RVKLELTRF-------------GINIDISAGIPLSTTLHSSI 429
            E     A++  D    R  +   L                    ++SAG P+S+     +
Sbjct: 227  EPSSTIAIVVPDLVAKRELLINALDEAFEPQVILPNTPDYVQPYNVSAGTPMSSQPIIML 286

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
               +L       D   + ++V  P       E                            
Sbjct: 287  AKKILTLGAASTDVATLRSIVMSPFIGNSESESGKRAL---------------------- 324

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
                               Q   +E      V L     + +  +  +    N      +
Sbjct: 325  --------------FDLTLQEVPTELSLSQMVSLERCPPKLMASVKQFLKIMNDAPERDT 370

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE--GKTLSSLFSKIIETGSCIKANAIEWID 607
            + +W K   + L  +     R   +  ++       L         T +  +  AI +  
Sbjct: 371  VGNWLKRFESALFAIGWPGERLPNSKEYQALKQHNELLHRLCSHYNTDTVTRDTAIYYYH 430

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +        T+     K   + +LG LE+  L FD + +  +N+ VWP      PFL  +
Sbjct: 431  LAL----SNTLYAAESKDCPIQVLGVLEAAGLTFDYIYILDMNDTVWPAKATPTPFLPEL 486

Query: 668  MQSDLNLKTAEKYIGQAA---HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
            +Q +  +  ++           D         LIY+    E       S +     + G 
Sbjct: 487  LQIEHGMPHSDASRELEFAKVLDNRFKRSCNSLIYSYCNTEKERKLTPSIFAVGEHLSGN 546

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                + L      Y     K+      P                T   S ++     P++
Sbjct: 547  VFKVNELNHIDLLYKQIPVKVLQDDMVPLETEVA----------TGGVSLLEDEARCPFS 596

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT------PEINHLMKQI 838
             + +  LK+  +P  +       RG + H ++    +              E    + Q 
Sbjct: 597  AFVKHRLKVAEMPVVRMGFSPQQRGIILHEVLEYFWEDMKTHEALVQLTQEERAQKVLQS 656

Query: 839  IDSHF----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
            I+  F     KE++   +  +   L  K+   +L+ E +   +     +     + I  +
Sbjct: 657  IERAFSAFTTKEDISSTLIEMEVQLLSKVIDKWLDIEVQR-PAFIVEELEQKKIVTIGPL 715

Query: 895  GIHLTGFADRIDLLKSGFVDI-TDYKTGDNPKKE-TAQKLI-DPQLSLEAAALKAGSFSQ 951
             I +    DR D L      +   YK+G     +      + D QL + A   +      
Sbjct: 716  TIRI--RIDRKDRLIDNDRVVFIGYKSGSAIANKLDHAAGLTDVQLPISALTAENVDTVA 773

Query: 952  IDCRKVANLFYIRLKQK-----FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                K     Y  L         +           S  E  E+    L  +      G  
Sbjct: 774  YASLKTGEELYSGLADPTSSNVSRDKHTLIKAASVSMSEQIEQWKVRLETLAEQYAEGVV 833

Query: 1007 PFISHLRLSEKSNIQSEYDHLARV 1030
                 L  S  S          R+
Sbjct: 834  ----TLTPSVASCQFCPVKLTCRI 853


>gi|312867329|ref|ZP_07727538.1| ATP-dependent nuclease subunit B [Streptococcus parasanguinis F0405]
 gi|311097030|gb|EFQ55265.1| ATP-dependent nuclease subunit B [Streptococcus parasanguinis F0405]
          Length = 1088

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 121/982 (12%), Positives = 288/982 (29%), Gaps = 147/982 (14%)

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            + ++ E   L  I    L         E  L +  +        + L  +   ++T +  
Sbjct: 72   LNQVFEEQPLDDIGLGMLFFKALSQMKEQDLKVYGALRKDPQFIQQLVQLYHELQTAQMD 131

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            + DL  L+  +           L    +  +E LV+    S       L + E  HL + 
Sbjct: 132  FTDLELLEEAEKRED-------LLAIFEAVSEMLVKHRYESQSKMAFFLNQVEEGHLEEQ 184

Query: 226  TKG-PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
             +   I++ G T        L+S +     G  ++ G+  +     +     +     +S
Sbjct: 185  LQDVAIVVDGFTRFSAEEEALISLLHR--KGVEIVIGV--YASEKAYRASFREGNLYQAS 240

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                       L +L    +++ +   +    S     R                 +   
Sbjct: 241  VDF--------LLQLAKTFEVQPQYCGQALEDSFSRITR-----------MLEARYDFSQ 281

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRV 402
            +E+++ +  +    V L + + ++EE   +A ++R  L +    +   ++  D    +  
Sbjct: 282  VEDELGDQDRTA--VQLWQTNTQKEELEFVAKSIRQRLHDGARYRDIRVLLGDVEAYQLQ 339

Query: 403  K-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                  ++ I   +     +       ++ SL            +  L+K  L       
Sbjct: 340  LKTIFDQYQIPFYLGRSEAMVHHPLIQVIESLGRIKQFNYQTEDVINLLKTGL------- 392

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                             +    ++   +  +           H P   +R  + + E   
Sbjct: 393  ---------------YSDLTQEEVDAFEQYLRFAEIKGATKFHKPFTSNRQGKFNLEKLN 437

Query: 522  LLVDHILQCITPLVTYKTN-----KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
             L + +++ + P  + +         +    L     ++     ++++ L+E        
Sbjct: 438  TLRERVVEPLAPFFSQRKQKVTHLLTAFTEFLQEVQLSQNLQALIKDLALEEQE-----R 492

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            +++  K    +  ++       +    +++ ++   +     +        + +      
Sbjct: 493  YDQVWKAFLHVLEELNVVFEDQELTVDDFLALLLSGMQLSQYRTVPATVDVVTVQSYDLI 552

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA---------AHD 687
              L    +   GL +  +PK       LS   +  LN  T E    Q             
Sbjct: 553  EPLTAPYVYAIGLTQERFPKIAQNTSLLSEEERQQLNEATQEGAELQVVSSENLKKNRFV 612

Query: 688  FEMANGTR--HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG--------QC 737
                       L+ +     N +    S +L  L        +   + +         + 
Sbjct: 613  AVSLLNAATNQLVLSAPSLVNEMEDSVSPYLVELTKEPIAIEWTIKQAQASSDDIGTYRA 672

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPP----------------------------------- 762
             L    +L            +                                       
Sbjct: 673  LLARVIELHQEEIASELSAEEASFWSVAVRVLRKKLAAEGIQIPQISTELKSRQLQSDTL 732

Query: 763  ----LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                 E +  T S S + +     YA Y R +L L      +  PD    G   H I   
Sbjct: 733  QALYPEGKALTLSASALNEYYKHQYAFYLRYVLGLQEDETIR--PDARSHGNFLHRIFER 790

Query: 819  LIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
            ++K   ++   +  +   +    ++ F++           R L    + +      + Q+
Sbjct: 791  VLKDSSDQAFDQRLNEAIRETSQEAEFQQLYTESGETEFIRSLLLDTAKTTGRVLAQ-QN 849

Query: 877  SIEKIFVNIPAKMAI-------ESIGIHLTGFADRIDLLKS-GFVDITDYKTGDNP-KKE 927
             IE I        +        +   + L G  DRID L+  G + + DYK+       +
Sbjct: 850  GIETIGEETLFGGSAHTSYPLSDGRLLQLRGKVDRIDQLRDRGALGVVDYKSSLTQFHYD 909

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
                 ++ QL    +A++     Q + + +    Y+ +      D + + KK  + ++  
Sbjct: 910  KFFNGLNSQLPTYLSAIQDLKEYQ-EEQGIFGAMYLEMG-----DPVVDLKKTKTVEDAI 963

Query: 988  EKSLKNLIEIVTLLQNGEQPFI 1009
             +++K+  +   L    + P++
Sbjct: 964  NQTMKS-QQYKGLFMADQAPYL 984


>gi|227518366|ref|ZP_03948415.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis
           TX0104]
 gi|227074044|gb|EEI12007.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis
           TX0104]
          Length = 1123

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 18  ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 77

Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
             ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 78  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 132

Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
            +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 133 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 190

Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
               H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 191 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 235

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
             +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 236 PPLSTADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 295

Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
           +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 296 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 355

Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                   +        R  +  E V L      Y     K     R   +         
Sbjct: 356 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 415

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
               S   ++    L+    Q +    T           L  S                 
Sbjct: 416 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 475

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
             +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 476 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 534

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
            +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 535 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 594

Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
            I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 595 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 654

Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                       Y     +L    +Q    +    P      +                 
Sbjct: 655 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 714

Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                    S S ++      Y  ++R  L+L     F      
Sbjct: 715 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 772

Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
              G  FH  + +  K      +N  E+      ++        L               
Sbjct: 773 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 832

Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
            I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 833 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 890

Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
           + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 891 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 950

Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
              K A   Y+ +          +D ++ 
Sbjct: 951 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 979


>gi|229132030|ref|ZP_04260893.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST196]
 gi|228651430|gb|EEL07402.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST196]
          Length = 1166

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 105/947 (11%), Positives = 237/947 (25%), Gaps = 151/947 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 102  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDTHSSSAEQKLLANKVYDL 161

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L+         Y   L+   ++         I I G     P    ++  
Sbjct: 162  QLLYDDFERALIGKYL-DSEDYLQLLIEKLSDS-EYVKGAEIYIDGFHSFSPQELEIVRG 219

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 220  LMRLGTRVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 270

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 271  KTIPLMEQ-----PRFHSPALAHLETHYEARPNEKYHGE---------ASVTISTAANLR 316

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   D   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 317  AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                 + S L  I     + A+   VK  L       K       +  E   L       
Sbjct: 377  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGK 436

Query: 484  DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522
                    +  R                         ++    P  + +   +     + 
Sbjct: 437  RWTSEDPWMYRRYRSLDDASEMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +         L  +D  ++    +  +            
Sbjct: 497  MCEAVYLFLEELDVPKKLEELRVRAEENGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKM 556

Query: 577  FEEEGKTLSSLFSKIIETGSCIK---------ANAIEWIDIITRLIDGETVKPKIEK--- 624
                   + S   + ++  +             +     DI    I G            
Sbjct: 557  SLSMFTEVMSTGLEALQFANIPPSLDQVLVANIDHSRLSDIKATFIIGVNEGVIPAAPMD 616

Query: 625  -------------SSTLFILGTLESRLLNFDTLI---LGGLNEGVWPKNTAKN----PFL 664
                         ++ + +  T    LL    ++   +   +E ++      +      L
Sbjct: 617  EGMLSDEERNVLTAAGIELAPTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLL 676

Query: 665  SRVMQSDLNLKTAE--------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
            +      +     +             +  +      T  +  +  +++           
Sbjct: 677  ASSFIKKIKRMFPDVKESFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 730  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTDVSRDLYGDTIKG 789

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------I 820
            S S ++      YA +A+  L L     F    D  D G LFH  +  +           
Sbjct: 790  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADKLLRENRTW 847

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                 K    ++ L+ + I    +++ L       +      +I    S +  E    S 
Sbjct: 848  ADLSIKECEHLSALVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSG 907

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRIDLLKSGF---VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D  +      + I DYK + 
Sbjct: 908  FVPVDLEVPFGMGGTGSLPPMEFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSS 967

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965
                       +  Q+      + + +     +      A + Y  +
Sbjct: 968  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGSTASPAGVLYFHI 1014


>gi|78776289|ref|YP_392604.1| hypothetical protein Suden_0088 [Sulfurimonas denitrificans DSM
           1251]
 gi|78496829|gb|ABB43369.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 781

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/384 (17%), Positives = 146/384 (38%), Gaps = 29/384 (7%)

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
           + +    I++  + +   T+     +   + ++G LE+R + F+ +I+   ++   PK +
Sbjct: 384 EMSVKSVINLFMQRLSKRTL--DDVRGGKITVMGVLETRSVTFEAIIIVDFDDSNVPKKS 441

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQ 717
            K+ FL+  ++   NL T         H +EM   G++ +  +         +  SR+L+
Sbjct: 442 DKDMFLNTQVREMANLPTMSDRENLQKHYYEMLINGSKEVAISFVKS---KESAGSRFLK 498

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
           +L +       +          ++   L         +  +       + +T S +++K 
Sbjct: 499 QLNIKENNQHNEQ---------EYASLLFSRAGVNKQQEREISFDYSFRGKTLSATKLKT 549

Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            +      Y R I++L      K  P   + G+  H  + EL      K++ E    +++
Sbjct: 550 FLTCKRKYYYRYIMQLKNHEIPKDMPKEHEIGSDVHKALKELYT---KKSSYESLEELRK 606

Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
            +       +    ++     +  +    F+++E K  +    + +     +++E  G+ 
Sbjct: 607 DLHKEMSCASGESELEGYLMAVQERRMSVFVQNEIKRFAEGYVV-LECEKSLSVEFGGMV 665

Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
           L G  DRID+ K   + + DYKTG  P   ++   +  D QL                  
Sbjct: 666 LNGQIDRIDI-KENELYVLDYKTGSYPIYTQKNFTEATDFQLEFYYLLAS-------TLG 717

Query: 956 KVANLFYIRLKQKFKIDCITNDKK 979
           +V    Y  LK+   +      +K
Sbjct: 718 QVKECGYYDLKESKIVTEPLLSEK 741


>gi|323351322|ref|ZP_08086978.1| exonuclease RexB [Streptococcus sanguinis VMC66]
 gi|322122546|gb|EFX94257.1| exonuclease RexB [Streptococcus sanguinis VMC66]
          Length = 1093

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 119/923 (12%), Positives = 253/923 (27%), Gaps = 137/923 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L       T  L + +  S
Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       A +   +     ++I G T        L+  +     G  ++ G   +
Sbjct: 166 SSQIAAFAQHILAGDTDEELENLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +               
Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISH------------A 261

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
               +F           D  E  +   +   S + +    N++EE   +A ++R  + + 
Sbjct: 262 EAEDAFGRISKVLESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
            + K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 VHYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       G+    ++   +  +          
Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDHFEQYLRFADIKGAAK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN-STCGNLSISDWTKLTVTCL 561
                  +   + D +    +   ++  +      ++          +           L
Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTTSGLLAKFTEFVQVARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +   E ++      EE  K  S +  +  +  +  K    +++ ++   +     +  
Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN  T  +  
Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598

Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721
            Q A         +         T+ L+ +     N +    S +L  L           
Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658

Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758
                                 L   +         Q +     R L           P 
Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPH 718

Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               + QP   S S + +     YA + + +L+L     +   P
Sbjct: 719 ISKELKTESLQPETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFH 861
           D    G   H I  ++++   + +         +    ++ FE            R L  
Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYGESGQTRFARQLLL 836

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913
             + +         S IE I             + +     + ++G  DRID L K+  +
Sbjct: 837 DTARAT-GRVLAHPSGIETIGEETGFGSASKPFLTLGNGRAVTVSGKVDRIDRLTKTESL 895

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+GD     E     ++ QL    AA++  +  Q D        Y+++      D
Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
            I   K   +  +   +S+K L 
Sbjct: 950 PIVALKDTKTLADAVNQSMKPLQ 972


>gi|229010529|ref|ZP_04167731.1| ATP-dependent nuclease, subunit B [Bacillus mycoides DSM 2048]
 gi|228750727|gb|EEM00551.1| ATP-dependent nuclease, subunit B [Bacillus mycoides DSM 2048]
          Length = 1171

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 105/947 (11%), Positives = 237/947 (25%), Gaps = 151/947 (15%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188
            LS+    A      ++L  +I   +       +++ +    +                 L
Sbjct: 107  LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDTHSSSAEQKLLANKVYDL 166

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            ++    +   L+         Y   L+   ++         I I G     P    ++  
Sbjct: 167  QLLYDDFERALIGKYL-DSEDYLQLLIEKLSDS-EYVKGAEIYIDGFHSFSPQELEIVRG 224

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        +   +D        N +        +              ++     I+ E
Sbjct: 225  LMRLGTRVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                L         R    + + L        N               + V +  A N R
Sbjct: 276  KTIPLMEQ-----PRFHSPALAHLETYYEARPNEKYHGE---------ASVTISTAANLR 321

Query: 369  EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +   D   +  A++  +  +    ++   T + I   I    P+S  
Sbjct: 322  AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                 + S L  I     + A+   VK  L       K       +  E   L       
Sbjct: 382  PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGK 441

Query: 484  DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522
                    +  R                         ++    P  + +   +     + 
Sbjct: 442  RWTSEDPWMYRRYRSLDDASEMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501

Query: 523  LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + + +   +  L         +         L  +D  ++    +  +            
Sbjct: 502  MCEAVYLFLEELDVPKKLEELRVRAEENGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKM 561

Query: 577  FEEEGKTLSSLFSKIIETGSCIK---------ANAIEWIDIITRLIDGETVKPKIEK--- 624
                   + S   + ++  +             +     DI    I G            
Sbjct: 562  SLSMFTEVMSTGLEALQFANIPPSLDQVLVANIDHSRLSDIKATFIIGVNEGVIPAAPMD 621

Query: 625  -------------SSTLFILGTLESRLLNFDTLI---LGGLNEGVWPKNTAKN----PFL 664
                         ++ + +  T    LL    ++   +   +E ++      +      L
Sbjct: 622  EGMLSDEERNVLTAAGIELAPTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLL 681

Query: 665  SRVMQSDLNLKTAE--------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
            +      +     +             +  +      T  +  +  +++           
Sbjct: 682  ASSFIKKIKRMFPDVKESFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770
            +R    G  DF+ ++        +W +K         Y+             L       
Sbjct: 735  KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTDVSRDLYGDTIKG 794

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------I 820
            S S ++      YA +A+  L L     F    D  D G LFH  +  +           
Sbjct: 795  SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADKLLRENRTW 852

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877
                 K    ++ L+ + I    +++ L       +      +I    S +  E    S 
Sbjct: 853  ADLSIKECEHLSALVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSG 912

Query: 878  IEKIFVNIPAKM----AIESIGIHL--------TGFADRIDLLKSGF---VDITDYK-TG 921
               + + +P  M    ++  +   L         G  DR+D  +      + I DYK + 
Sbjct: 913  FVPVDLEVPFGMGGTGSLPPMEFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSS 972

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965
                       +  Q+      + + +     +      A + Y  +
Sbjct: 973  KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGSTASPAGVLYFHI 1019


>gi|257415726|ref|ZP_05592720.1| exonuclease RexB [Enterococcus faecalis AR01/DG]
 gi|257157554|gb|EEU87514.1| exonuclease RexB [Enterococcus faecalis ARO1/DG]
          Length = 1196

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALVLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|225012051|ref|ZP_03702488.1| conserved hypothetical protein [Flavobacteria bacterium MS024-2A]
 gi|225003606|gb|EEG41579.1| conserved hypothetical protein [Flavobacteria bacterium MS024-2A]
          Length = 907

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 161/442 (36%), Gaps = 56/442 (12%)

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +   LI  +T+    +  S L I+G LE+RLL+FD +I+  +NEG+ P       ++   
Sbjct: 477  VFEMLIQNQTLDFSGDALSKLQIMGILETRLLDFDNVIITHVNEGIIPFGKTSVSWIPFD 536

Query: 668  MQSDLNLKTA-EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGT 725
            ++    + T  E+    A H F +    + +    +     + +   SR+L +L      
Sbjct: 537  VKKKFGMNTFIEQDHLYAYHFFRLLQRAKKVFLLYNANPEGLFSGEKSRFLVQLEYFKSP 596

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                  ++    + +    +    K             E     +S S + Q I +PY  
Sbjct: 597  KHELTFRQVDLPFNNLIDSVKPAIKTKAVL----VQLNEMAKEGFSPSSLTQYIRNPYLF 652

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-----NTPEINHLMKQIID 840
            Y +R+LK+  +   + +    D+GT+ H ++  L    +N+     +  ++ H + + + 
Sbjct: 653  YEQRMLKIKPLDTLELNLSAMDKGTIMHKVLEVLYLPFVNQSLSLNDFDQMLHKLPETLK 712

Query: 841  SHFEKE----NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI-------------EKIFV 883
              F       +     + I   +  +I  SF+  E ++ S               + ++V
Sbjct: 713  DCFNDLYKNDDHRTGKNHIVFRVMEQILRSFILMERELVSQGNTLIIKALEHIFCKPLWV 772

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-----------KETAQKL 932
                K       +   G  DRID L +G +   DYKTG+                  +K 
Sbjct: 773  EKIKK------EVVFKGTVDRIDSL-NGVLRFVDYKTGNVEANDLAYYEMSEVTSDPKKS 825

Query: 933  IDPQLSLEAAALKAG-----SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
               Q+ L +  LK         + +   K     ++ +  K         KK    D   
Sbjct: 826  ALFQVFLYSYVLKEEFSNQDCLAGVIPLKNYENSFL-VTSKRITS---KTKKTLLIDSKV 881

Query: 988  EKSLK-NLIEIVTLLQNGEQPF 1008
             ++ +  L  ++  + +   PF
Sbjct: 882  HEAYENELFLLIEEIYDPSIPF 903



 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 68/262 (25%), Gaps = 39/262 (14%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
             L  V I VP+ R+I  L+            I P I S+ D ++E    + + + +L  
Sbjct: 17  QELDRVKIIVPSIRSITFLKEALKNEIDV-PKIAPEIISVEDFIKELSGLERISNMDL-- 73

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
                                L       +  +P     S       A  L    + +++
Sbjct: 74  ---------------------LYTFFGVYFQNTPKEKQDSMEQFFNWAPTLIQEFNEMDS 112

Query: 162 EEKKWEDLHALKNEKY-GMWW---------LLAADFLKIASKYWT---ERLVELNASSPV 208
           +      L    +       W             +F     K +    + L         
Sbjct: 113 QLVDSNSLFDFMDAVGNIEKWDPKVKDNIKSRHLNFQNEIPKLYKLLFKELFNNQEGYAG 172

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                 +R  A +  +       + G      A   ++  +    + A VL  +D     
Sbjct: 173 MQLREAVRNLAFYTEQELPFHYFV-GFNALSKAEETIIQELL-ATDRAEVLWDIDEQFFN 230

Query: 269 AIWNTITEKSTNITSSNTTYST 290
             +        +  S+     +
Sbjct: 231 DPFQGAGHFIRHYFSNWNALKS 252


>gi|329117385|ref|ZP_08246102.1| ATP-dependent nuclease subunit B [Streptococcus parauberis NCFD 2020]
 gi|326907790|gb|EGE54704.1| ATP-dependent nuclease subunit B [Streptococcus parauberis NCFD 2020]
          Length = 1088

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 121/966 (12%), Positives = 261/966 (27%), Gaps = 140/966 (14%)

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
            E  LS+       +   + L D+   +         +  L            A  L    
Sbjct: 100  EDDLSVYSQLRADLTFVEQLKDLYKEL--------KISNLSVFDISFENERKAHDLITIF 151

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTVAN 251
                E L   +                 HL +     + +I G T        L++ + +
Sbjct: 152  TKIEEVLQAESLVQENPLNSLTDHIIQGHLDQELSTTVLVIDGFTRFSAEEELLVAALND 211

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                 ++   +        +                 S H Q      ++++  ++   +
Sbjct: 212  KCQEVVIGTYISKKAQAKSYIE-GNLYQASLDFMRDLSGHFQAK----MEYVTSQQSFHE 266

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
              G +S  +   +       + P                   +    + + ++ N++EE 
Sbjct: 267  EFGLLSELLEAEADFTQTDKMLP------------------AQARERIHIWQSLNQKEEL 308

Query: 372  ISIAIALRMSLDENKKKSALITADRNLARRVKLE---LTRFGINIDISAGIPLSTTLHSS 428
              IA A+R  L +  +   ++    ++            ++ I   +     +       
Sbjct: 309  EHIAKAIRQKLYQGHRYKDILVLLGDVEAYQAQIGPVFDKYEIPYYLGRSEAILHHPLVQ 368

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
             + SL            I  L+K  L      +           +          DI   
Sbjct: 369  FVESLERCRSYNWRREDIVNLLKSGLFGHFEKD----------WVDQFEAYVEFADINGY 418

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-----VTYKTNKNS 543
                        +        +     D E+   + +     +  L         +    
Sbjct: 419  TKFSRPFEVNSTD-------GNNHFRFDLEIVNQIREFSFSNLAQLFKSQKQKGLSLLEK 471

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                L+  D  K     +     +E         +E  KT  S+        +  K    
Sbjct: 472  LMTLLNAVDLPKNFQEMMTVQDENEQE-----RDQEVWKTFVSILEDFQLVFANEKLTLD 526

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
            + + ++   +     +        + +         +   ++  GL +  +PK T     
Sbjct: 527  QTLSLLKMAMQAANYRAVPATLDVVTVKSYDLVEPHSKPFVMALGLTQNNFPKKTKNTSL 586

Query: 664  LSRVMQSDLNLKTAEKYIGQAA-------HDFEMA----NGTRHLIYTRSLRENNIPTIA 712
            +S   +S  N      +    A       + F         T  L+ +  L  N      
Sbjct: 587  ISDQERSQTNEDQDYFHRFDLASQDNAKKNHFTALSLFNAATEELLLSYPLMLNESSEDM 646

Query: 713  S--------------------------------RWLQRLLVLGGTDFFDNLKKRGQC-YL 739
            S                                  L +L+ +        L++  +  + 
Sbjct: 647  STYLKSVHQYGIPIEEKGKNNLSRTDLDIGNYKSLLSQLVEINRGAIEGELQEEDKNFWT 706

Query: 740  DWTRKLDYTTKQPHYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYA 784
               R L       + + P+                    E +P + S S +    ++ Y 
Sbjct: 707  VMLRYLKKRLANENLQFPQAKNHLETKAISEEVMSLRYPEQKPMSLSTSALTVFFDNQYK 766

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS--H 842
             + + +L L  +      PD    GT  H +   ++      +  +       +      
Sbjct: 767  YFLQYVLGLQELQTIH--PDARQHGTYLHKVFETIMGDHRPIDFDQKVEDALNVTRQNNQ 824

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
            F+   L          +   I+ S     +  Q+ ++ +      ++ I +  + + G  
Sbjct: 825  FKHFYLEDAQGRYSLQVLEDIAKSTAGILKLNQN-LKVLSQEEAFELPI-TQSLLVKGKI 882

Query: 903  DRIDLLKSGFVDITDYKTGDNPKKETA---QKLIDPQLSLEAAALKAGSFSQIDCRK--- 956
            DRID L    + I DYK+  N  K         ++ QL    AAL+  + +     K   
Sbjct: 883  DRIDQLVDDSIGIVDYKSSAN--KFDIGCFYNGLNSQLVTYLAALREKAAAMSTEEKAIS 940

Query: 957  VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016
            +    Y+ L+       +     K   D+L E+  K+L     +    E+  +S      
Sbjct: 941  IFGAMYLHLQD----PKLDLKDFKQLDDKLVEEVYKDLT-YKGIFLEDEKEKLSDGSYQT 995

Query: 1017 KSNIQS 1022
            K+N+ S
Sbjct: 996  KNNLYS 1001


>gi|256618696|ref|ZP_05475542.1| exonuclease RexB [Enterococcus faecalis ATCC 4200]
 gi|257089524|ref|ZP_05583885.1| exonuclease rexB [Enterococcus faecalis CH188]
 gi|312903645|ref|ZP_07762821.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0635]
 gi|256598223|gb|EEU17399.1| exonuclease RexB [Enterococcus faecalis ATCC 4200]
 gi|256998336|gb|EEU84856.1| exonuclease rexB [Enterococcus faecalis CH188]
 gi|310632998|gb|EFQ16281.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0635]
 gi|315577473|gb|EFU89664.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0630]
          Length = 1196

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEALLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|322375243|ref|ZP_08049756.1| ATP-dependent nuclease subunit B [Streptococcus sp. C300]
 gi|321279506|gb|EFX56546.1| ATP-dependent nuclease subunit B [Streptococcus sp. C300]
          Length = 1091

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 119/964 (12%), Positives = 258/964 (26%), Gaps = 154/964 (15%)

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
           P  +++  +              P  ++                     + L ++   + 
Sbjct: 76  PAKTSLDDIGLGMAFYKCLAELDPKDLRVYGA---------IKQDPQFIQQLVELYHEMT 126

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA- 219
           T +  + DL +L +E             +  + Y  +        +       L+ A   
Sbjct: 127 TAQMSFLDLESLTDEDKRAD---LLLIFEKVTTYLNQ-----GQLAQGSQLSHLIEAIEN 178

Query: 220 -EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
            +     ++  +II G T        ++  +     GA ++ G                S
Sbjct: 179 DKVSSDFSQIALIIDGFTRFSAEEEHVVDLLHR--KGAEIVIGA-------------YAS 223

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
               +S+ T     Q S+ + L  L  K            +   ++     SF       
Sbjct: 224 KKGYTSSFTEGNLYQASV-EFLHHLGAK-------YQTPAQDRSQTHEKMDSFDKASRLL 275

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALIT 393
             + D  E  +   +K   ++ +     ++EE   +A ++R  L ++ +        L+ 
Sbjct: 276 ESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLHDHPELSYKNFRILLG 335

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              +    +K    ++ I   +     ++    +  + S+L           +  L++  
Sbjct: 336 DVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTG 395

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
           L                        + +  DI   +  +                +S   
Sbjct: 396 L----------------------YTDLSQADIDAFEQYLRYLGINGMPAFQQTFTKSHHG 433

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           + D E    L   +L  +  L   +  K         +      ++            L 
Sbjct: 434 KFDLERLNALRLRVLAPLETLFASRKQKTENLLQKWNTFLKNAALSKQMQELTATMETLE 493

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                E  K    +  +     +  + +  +++ ++   +     +       T+ +   
Sbjct: 494 QERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSY 553

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA-------H 686
                +  D +   GL +   PK       L+   +  LN  T E      A       +
Sbjct: 554 DLIAPMTADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKN 613

Query: 687 DFEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLG------------------- 723
            + M        + L+ +     N   +  S +LQ L+  G                   
Sbjct: 614 RYTMLSLVNAARKQLVLSAPSLLNENESKESAYLQELVSFGFSRIEKKIHQKSLSKDDMG 673

Query: 724 ---------------GTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKP------- 759
                          G              L     +KLD            P       
Sbjct: 674 SYHSLLSSLVAYHQQGETSNTEQDLTFVKVLARVMGKKLDQKGLTNPALPTSPSSKPLEK 733

Query: 760 ----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                     +    S S + +   + Y+ + R +L L      +  PD    G   H I
Sbjct: 734 ETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EEVRLRPDARSHGNFLHRI 791

Query: 816 ITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
               +K  +  +  +      +    +  FE            + +   ++ +   H  +
Sbjct: 792 FERALKLPVENSFDQHLEQAIKETSQEREFEAIYQESLEAQFTKEVLLDVARTT-GHILR 850

Query: 874 IQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPK 925
              +IE I             + ++    +H+ G  DRID L   G + + DYK+     
Sbjct: 851 HNPAIETIQEEATFGGKDQAFIQLDNGRSVHVRGKVDRIDRLKADGALGVVDYKS----S 906

Query: 926 KETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               Q       ++ QL    AALK                Y+ + +  +          
Sbjct: 907 LTQFQFPYFFNGLNSQLPTYLAALKREGEQNF-----FGAMYLEMAEPVQSLLAVKSLAG 961

Query: 981 YSAD 984
             A+
Sbjct: 962 AVAE 965


>gi|170079560|ref|YP_001736193.1| hypothetical protein SYNPCC7002_F0007 [Synechococcus sp. PCC 7002]
 gi|169887229|gb|ACB00938.1| conserved hypothetical protein [Synechococcus sp. PCC 7002]
          Length = 889

 Score =  162 bits (410), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 126/962 (13%), Positives = 258/962 (26%), Gaps = 133/962 (13%)

Query: 100  NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
               ++  ++    A+ +      L  +  +L  +  + +        +  + +A  ++  
Sbjct: 24   AQAIAPTRQT---AKRLKQLPYSLTSLAAELLWQKGIRVLNPLEQYRYFKQAIAATLNPT 80

Query: 160  ETEEK--KWE-DLHALKNEKYGMWWLLAADF-------LKIASKYWTERLVELNASSPVG 209
            + E     W   +  L              F       L      +  +L   N      
Sbjct: 81   DLEGTVQTWRGAIQELLQT--SRELDALKKFETPKIQQLYQVIHAYQAQLEADNVVDSAA 138

Query: 210  YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
                 +  E           + I G           +  +A  P+  + LP +D      
Sbjct: 139  ALWRAIALE------PDLKTLCIYGYPDPRADEIAFIEAIA-APDSLLYLPQVD---DQP 188

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
            +++                   PQ  L K L     + +D +                  
Sbjct: 189  LFS-------------------PQAELIKRLQGKGWQLDDSQ------------------ 211

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKK 387
               P   +             ++      V      N   EA      ++  L +    +
Sbjct: 212  ---PETLTLGDRLSQKFFGQNSVNFEPKTVQAHVYPNWEAEARGTLGQIKQLLQQGVAAR 268

Query: 388  KSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
            K A++T + N    +       + + + +   I L  T   + L  LL  I     F   
Sbjct: 269  KIAIVTNEDNHWGPLLLHVAQEYDVPLSLPNPISLQKTRLGAWLEQLLTVIETNYSFEVT 328

Query: 447  ATLVKHPLAKFGFPE-KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
            A  + HPL      E    +R        A +     +   DL  L   +  +       
Sbjct: 329  AQWLSHPLTHPLGREFWQAARTLKPNHFEAWQALTQEHYQWDLAVLQPPQQGSFLVWREY 388

Query: 506  PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                  + +  +     + + +     I  L +  T+   T          + ++  L  
Sbjct: 389  LKEILNVLKVRRRALPWVTETVAYKKLIDGLDSLGTSLTETMTWEMFQAEIRTSLQLLTT 448

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI--EWIDIITRLIDGETVKPK 621
                    +     +            I      +         +D  TR    + +  +
Sbjct: 449  PAYPMRGGVGVHNPQNLIGAQYDYIFCIDGAEGVMPRPLRDEPVLDFYTRKQLSDKLPIE 508

Query: 622  I----EKSSTLFILGTLESRLLNFDTLI-LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
                  +         L+     F       G  EG +    A   F        L L+ 
Sbjct: 509  GAIAKARREQFQFYSLLQVPQKQFTFSYSTLGQGEGRYRSQVASIYF------KKLGLQP 562

Query: 677  AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
             +  I  AA         R    T+S                L            +   +
Sbjct: 563  KKTSIAIAA----SVAEARQFYLTQSQIP-----------TELQSETLDQAIAAHQIEQR 607

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                    LD          P        +  T+S S++ QL   P+  +A ++LKL  +
Sbjct: 608  RL--QKSALDEYQGLIGVPFPW-------REHTFSASQLLQLGQCPFKWFAGKVLKLAAL 658

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN--HLMKQIIDSHFEKENLPP-HID 853
               +   + + RG L+H ++   +         ++     +K       +   LP     
Sbjct: 659  DEPETTLEPSQRGILYHKVLELALNAYRENPDLDLTDFEQLKAWFIEAEDVLKLPELSAW 718

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL-LKSGF 912
                    +     +   E +        +    +   +     +TG+ DRID    +  
Sbjct: 719  ERQCTEHIQTLQRAIAAPEFLPEGRHVFRLEDKIQFTWQD--FRITGYIDRIDQISGTNE 776

Query: 913  VDITDYKTGDNPKKE-TAQKLI---DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
            + I DYKT  +P K    +  +   D QL +  A+++     Q    +V    Y  L + 
Sbjct: 777  LVIMDYKTSSSPPKGIQDESGLLKIDLQLPIYEASVQH----QYPEFQVKQNLYYSLTKG 832

Query: 969  FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             K+   + D+K        + +   L      +   E  +         +    ++  + 
Sbjct: 833  KKLSSKSPDEKD------LQAAGDRLK-----IHLEEGSYPVAPDKKYDACKYCDFKSVC 881

Query: 1029 RV 1030
            R+
Sbjct: 882  RI 883


>gi|307288583|ref|ZP_07568567.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0109]
 gi|306500490|gb|EFM69823.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0109]
 gi|315165523|gb|EFU09540.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX1302]
          Length = 1196

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 110/955 (11%), Positives = 247/955 (25%), Gaps = 147/955 (15%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYG----MWWLLAADFLKIASKYWTERLVEL 202
               + L  +   +     +  +L+    ++          L    L +    +  ++ + 
Sbjct: 125  GFIQQLFQLYQEMREGNIEIAELYPFLEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQY 184

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLP 260
               S       +++  +E+L       +  +I+G         +L+  +        V  
Sbjct: 185  GYES-----AEIIQHLSEYLQTVDLSNVQFVISGYQQFTARELKLIEVLMAQAGSVKVAL 239

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             LD   P  + +  +       +       H  Y LA+            K++  +S+ +
Sbjct: 240  LLDKQYPHDLPDPRSLFYEAGQTY------HQLYQLAR-----------QKQIPILSDYV 282

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
              + ++I+   L         +      +         + L  A+N +EE   +A  +R 
Sbjct: 283  EKKEVLITNPDLQGLNDYWIQSQEHLPPLSTTDWRGDGLLLWRAENVKEELTHVATEIRR 342

Query: 381  SLDENK---KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             + E     K+  ++T D +     ++       I + +   + +        + SL   
Sbjct: 343  LVVEEGYRYKEIQVLTRDLDCYENLLEPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAI 402

Query: 437  IFKLNDFMAIATLVKHPLAK--------------FGFPEKYLSRAKNALELVALRGNKNS 482
                  +  +   ++  L                +        R  +  E V L      
Sbjct: 403  HSYNYRYRDVLRFLRTELFMPMNQLATSEESLTDWLNQRNAWRRKVDITENVVLAYGYEG 462

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
            Y     K     R   +             S   ++    L+    Q +           
Sbjct: 463  YYWSQEKDWEFIRYDFEAEEQEDVATMEEESNAIRQSLQRLLPSYFQAMISAKNGLEAAT 522

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                 L  S                   +      E+    L SL  + +        + 
Sbjct: 523  VFYHFLLQSGVATQLKMWRLQAIEAGQLETAR-NHEQTWDALMSLLDEYVTVYGESSFDF 581

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
              + +I    ++G            + +     +R          G+ E ++P+      
Sbjct: 582  TTFQEIFVSGLEGLHYSKVPTAIDQVQVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKT 641

Query: 663  FLSRVMQSDLNLKTAE---------KYIGQAAH--DFEMANGTRHLIYTR-SLRENNIPT 710
             LS   +  +N    E         + I Q  +      ++    L  T  S+++     
Sbjct: 642  LLSDEERQAINDTLTENQYLRGTTGRKIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEV 701

Query: 711  IASRWLQRLLVLGGTDFFDNLKK-----------RGQCYLDWTRKLDYTTKQPHYKRPKP 759
              S + + +        F+  +                Y     +L    +Q    +   
Sbjct: 702  KPSPYFKNIQKDLNLPVFEKNETTIFDDETTSLSHISTYRTLIGELTRLKRQRKETQEGL 761

Query: 760  FPPLEAQPRTY----------------------------------------SFSEIKQLI 779
             P      +                                          S S ++   
Sbjct: 762  LPFWLNMEKALMNQSIAPLAKQVFESLTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFY 821

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--INKNTPEINHLMKQ 837
               Y  ++R  L+L     F         G  FH  + +  K      +N  E+      
Sbjct: 822  RCQYQYFSRYGLRLKERDVF--GLSPAATGEFFHEALDQFFKLLIMNQRNLSELTDQEVN 879

Query: 838  IIDSHFEKENLPPH-------------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++        L                I         K+  S+    +  +S +  +   
Sbjct: 880  LLAEEVLNSILGDARFSVLTTSSRMNYIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTE 937

Query: 885  IPA------------KMAIESIG-IHLTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKE 927
            +              ++ +++ G IH+ G  DRID L         + DYK+        
Sbjct: 938  VLFGQIAAKKGISGLELPLKNQGKIHVRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMT 997

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKY 981
             A   +  Q+          +   +    K A   Y+ +          +D ++ 
Sbjct: 998  EAYYGLAMQMLTYLDVALMDAVQLVGQEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|290889813|ref|ZP_06552900.1| hypothetical protein AWRIB429_0290 [Oenococcus oeni AWRIB429]
 gi|290480423|gb|EFD89060.1| hypothetical protein AWRIB429_0290 [Oenococcus oeni AWRIB429]
          Length = 1161

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 120/976 (12%), Positives = 269/976 (27%), Gaps = 154/976 (15%)

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            L   +    P   L++    A       N+A+ +  I        ++  L          
Sbjct: 101  LVGQVLRELPIEKLNIFARSARMPGFVANVAEQLLEIWRSGLTASEILPLHQFDDR--LS 158

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                 L +        L + +         A   ++ +             G +G   + 
Sbjct: 159  EKIKVLALIETKILPSLKDYSLPDDALRNFATQISKIDLKNCNFY----FEGFSGFTASE 214

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
              L+  + +           D        + I    T    S+     +  Y   +L   
Sbjct: 215  LSLVKALISA----------DRKTQLGKKSEIVFSLTGEQQSDQYGEGNLFYRANQLFKN 264

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
               +    +     +      S +  +       +    +           + F    ++
Sbjct: 265  ---EFSSARVWIVSNIRPLSESQLNFEQSWRELETQGFTSQK---------RSFPQTKIV 312

Query: 363  EADNEREEAISIAIALRMSLDENKKKSA-----LITADRNLARRVKLELTRFGINIDISA 417
             + ++  E   +A ++R  L +N K  A     L          +     R+ +   +  
Sbjct: 313  VSSDQEHEIDFVARSIRQRLVDNPKLRAKDILVLAQRLDGYKNIIPKIFDRYDLPYFLDK 372

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
               +S    +S+  +LL        +  I  + +  L  +   + + +        +   
Sbjct: 373  DTRMSDHPLASLAENLLG-SSNEFAYERIMKIFRTGLLSWQLEDNFQTALDYLENYLLAN 431

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
              K      +   L+        N+ H                  L++ +   I  ++  
Sbjct: 432  NPKEKNWRQEEFQLIQISDEQDLNDDHKID----------RQINALINRMRLFIIKILDD 481

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDE----HRKLPNLWFEEEGKTLSSLFSKIIE 593
               K +   N       K     L +  +D+         +   ++  K L S   ++ +
Sbjct: 482  FQEKFAKVENYH--QAVKTLYNWLTDQQVDQVLLNQANDGDDRGQQTWKLLLSTLDEVDQ 539

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                 K +  +++ I+       +          + +  +   +  +F  L     ++  
Sbjct: 540  LIGDKKYSQKDFLQILKDGFAAASFSGIPASLDQITVSESGIVQRNDFKALYFIDASDAS 599

Query: 654  WPKNTAKNPFLSRVMQSDL--------------NLKTAEKYIGQAAHDFEMANGTRHLIY 699
             P  T  +  +    +  L              +    E           + + T  + +
Sbjct: 600  LPAQTNSSSLIDDFDRLQLIDDFSKAQKPYYLQDTSRQEMTAENFRFYSSVLSATDSVTF 659

Query: 700  TRSL-RENNIPTIASRWLQRLL----VLGGTDFFDNLKKRGQCYLDW-------TRKLDY 747
            + S  R +      S +L+RL          +   +L +     +D+          L  
Sbjct: 660  SYSKLRLDGKQNELSPYLRRLSLKNVSDLKIEKIPDLPQSQADLVDYLGTANSSAAILSQ 719

Query: 748  TTK--------------------------------QPHYKRPKPFPPLEAQPRTYSFSEI 775
            T +                                QP   RP+    L  +    S S+I
Sbjct: 720  TAQNFGEDFIDGLTDLLIKRNPYFQRILQALHYNNQPVTLRPELIKKLFGEDLRLSISQI 779

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            ++  ++PY  + +  L+L     F    D    GT +H+I  ++I + I K T       
Sbjct: 780  EKYYSNPYEYFLQYGLRLKKRNQF--TVDAALSGTYYHSIFEQVINRLIGKRTD-----F 832

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFH---------KISHSF---------LEHEEKIQSS 877
              + D   +K +     ++I    F           ++ S          L H     ++
Sbjct: 833  HDLSDQELKKLSQESAQNLIELPDFQILQSDDHFRAVARSLTGDVLLTLKLMHRANRLNN 892

Query: 878  IEKIFVNIPA---------KMAIESIGIH--------LTGFADRIDLLKSGFVD--ITDY 918
               I               + ++  +           L G  DRID      +   I DY
Sbjct: 893  SRPIKTEAVFGKLSSDQQREQSLSGLDFTLANGRKIYLRGKVDRIDQQDLEHIFGTIIDY 952

Query: 919  KT-GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
            K+ G       A    + QL     AL   S S+I   +     +++++ K         
Sbjct: 953  KSNGKVFDFRDAYVGTELQLLTYWLALSKNS-SRIGINQPGGAVFVQIRNKPADISQALA 1011

Query: 978  KKKYSADELSEKSLKN 993
             +      + +++ + 
Sbjct: 1012 HQIQLDQLIGDRAKQQ 1027


>gi|116490405|ref|YP_809949.1| DNA helicase/exodeoxyribonuclease V, subunit B [Oenococcus oeni
            PSU-1]
 gi|122277406|sp|Q04GY8|ADDB_OENOB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|116091130|gb|ABJ56284.1| DNA helicase/exodeoxyribonuclease V, subunit B [Oenococcus oeni
            PSU-1]
          Length = 1161

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 120/976 (12%), Positives = 269/976 (27%), Gaps = 154/976 (15%)

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            L   +    P   L++    A       N+A+ +  I        ++  L          
Sbjct: 101  LVGQVLRELPIEKLNIFARSARMPGFVANVAEQLLEIWRSGLTASEILPLHQFDDR--LS 158

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                 L +        L + +         A   ++ +             G +G   + 
Sbjct: 159  EKIKVLALIETKILPSLKDYSLPDDALRNFATQISKIDLKNCNFY----FEGFSGFTASE 214

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
              L+  + +           D        + I    T    S+     +  Y   +L   
Sbjct: 215  LSLVKALISA----------DRKTQLGKKSEIVFSLTGEQQSDQYGEGNLFYRANQLFKN 264

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
               +    +     +      S +  +       +    +           + F    ++
Sbjct: 265  ---EFSSARVWIVSNIRPLSESQLNFEQSWRELETQGFTSQK---------RSFPQTKIV 312

Query: 363  EADNEREEAISIAIALRMSLDENKKKSA-----LITADRNLARRVKLELTRFGINIDISA 417
             + ++  E   +A ++R  L +N K  A     L          +     R+ +   +  
Sbjct: 313  VSSDQEHEIDFVARSIRQRLVDNPKLRAKDILVLAQRLDGYKNIIPKIFDRYDLPYFLDK 372

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
               +S    +S+  +LL        +  I  + +  L  +   + + +        +   
Sbjct: 373  DTRMSDHPLASLAENLLG-SSNEFAYERIMKIFRTGLLSWQLEDNFQTALDYLENYLLAN 431

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
              K      +   L+        N+ H                  L++ +   I  ++  
Sbjct: 432  NPKEKNWRQEEFQLIQISDEQDLNDDHKID----------RQINALINRMRLFIIKILDD 481

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDE----HRKLPNLWFEEEGKTLSSLFSKIIE 593
               K +   N       K     L +  +D+         +   ++  K L S   ++ +
Sbjct: 482  FQEKFAKVENYH--QAVKTLYNWLTDQQVDQVLLNQANDGDDRGQQTWKLLLSTLDEVDQ 539

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                 K +  +++ I+       +          + +  +   +  +F  L     ++  
Sbjct: 540  LIGDKKYSQKDFLQILKDGFAAASFSGIPASLDQITVSESGIVQRNDFKALYFIDASDAS 599

Query: 654  WPKNTAKNPFLSRVMQSDL--------------NLKTAEKYIGQAAHDFEMANGTRHLIY 699
             P  T  +  +    +  L              +    E           + + T  + +
Sbjct: 600  LPAQTNSSSLIDDFDRLQLIDDFSKAQKPYYLQDTSRQEMTAENFRFYSSVLSATDSVTF 659

Query: 700  TRSL-RENNIPTIASRWLQRLL----VLGGTDFFDNLKKRGQCYLDW-------TRKLDY 747
            + S  R +      S +L+RL          +   +L +     +D+          L  
Sbjct: 660  SYSKLRLDGKQNELSPYLRRLSLKNVSDLKIEKIPDLPQSQADLVDYLGTANSSAAILSQ 719

Query: 748  TTK--------------------------------QPHYKRPKPFPPLEAQPRTYSFSEI 775
            T +                                QP   RP+    L  +    S S+I
Sbjct: 720  TAQNFGEDFIDGLTDLLIKRNPYFQRILQALHYNNQPVTLRPELIKKLFGEDLRLSISQI 779

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            ++  ++PY  + +  L+L     F    D    GT +H+I  ++I + I K T       
Sbjct: 780  EKYYSNPYEYFLQYGLRLKKRNQF--TVDAALSGTYYHSIFEQVINRLIGKRTD-----F 832

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFH---------KISHSF---------LEHEEKIQSS 877
              + D   +K +     ++I    F           ++ S          L H     ++
Sbjct: 833  HDLSDQELKKLSQESAQNLIELPDFQILQSDDHFRAVARSLTDDVLLTLKLMHRANRLNN 892

Query: 878  IEKIFVNIPA---------KMAIESIGIH--------LTGFADRIDLLKSGFVD--ITDY 918
               I               + ++  +           L G  DRID      +   I DY
Sbjct: 893  SRPIKTEAVFGKLSSDQQREQSLSGLDFTLANGRKIYLRGKVDRIDQQDLEHIFGTIIDY 952

Query: 919  KT-GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
            K+ G       A    + QL     AL   S S+I   +     +++++ K         
Sbjct: 953  KSNGKVFDFRDAYVGTELQLLTYWLALSKNS-SRIGINQPGGAVFVQIRNKPADISQALA 1011

Query: 978  KKKYSADELSEKSLKN 993
             +      + +++ + 
Sbjct: 1012 HQIQLDQLIGDRAKQQ 1027


>gi|325696016|gb|EGD37907.1| exonuclease RexB [Streptococcus sanguinis SK160]
          Length = 1093

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 119/924 (12%), Positives = 255/924 (27%), Gaps = 139/924 (15%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L       T  L E +  S
Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNEGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       A +   +     ++I G T        L+  +     G  ++ G   +
Sbjct: 166 SSQIADFAQHILAGDTDEELADLALVIDGFTRFSAEEEFLVGLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +               
Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYIPH------------A 261

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
               +F           D  E  +   +   S + +    N++EE   +A ++R  + + 
Sbjct: 262 EAEDAFGRISKVLESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       G+    ++   +  +        + 
Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDHFEQYLRFADIKGASK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561
                  +   + D +    +   ++  +      ++   +      +           L
Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRHRVMTPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +   E ++      EE  K  S +  +  +  +  K    +++ ++   +     +  
Sbjct: 480 TALLQGESQQEQE-CHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN +  +   
Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLN-EARDSQA 597

Query: 682 GQA----------AHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV-------- 721
                         +         T+ L+ +     N +    S +L  L          
Sbjct: 598 ELQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPII 657

Query: 722 -----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRP 757
                                  L   +     K   Q +     R L           P
Sbjct: 658 VKKPQASSDDIGSYRALLSQIIELHQEEIDREWKAEEQTFWAVAVRVLRKKLAAEGISIP 717

Query: 758 KPFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
           +                    + QP   S S + +     YA + + +L+L     +   
Sbjct: 718 QISKELKTETLQSETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIH 775

Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLF 860
           PD    G   H I  ++++   + +         +      E E++          R L 
Sbjct: 776 PDARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLL 835

Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGF 912
              + +         S IE I             + +E    + ++G  DRID L K+  
Sbjct: 836 LDTARAT-GRVLAHPSGIETIGEETGFGSASTPFLTLENGRAVTVSGKVDRIDRLTKTES 894

Query: 913 VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
           + + DYK+GD     E     ++ QL    AA++  +  Q D        Y+++      
Sbjct: 895 LGVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT----- 948

Query: 972 DCITNDKKKYSADELSEKSLKNLI 995
           D I   K   +  +   +S+K L 
Sbjct: 949 DPIVALKDTKTLADAVNQSMKPLQ 972


>gi|322385778|ref|ZP_08059422.1| exonuclease RexB [Streptococcus cristatus ATCC 51100]
 gi|321270516|gb|EFX53432.1| exonuclease RexB [Streptococcus cristatus ATCC 51100]
          Length = 1095

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 119/919 (12%), Positives = 263/919 (28%), Gaps = 133/919 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL+ L+  +           L      ++  L   N  +
Sbjct: 113 QFIQQLLDLYHELQTAQMTFTDLNYLEEPEKRED-------LLKIFTAFSAALQAGNYDA 165

Query: 207 PVGYQIALMRAEAEHLMKGTKG-PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                I      A  L        ++I G T        L+  +     G  ++ G+  +
Sbjct: 166 TSKLTIFAQHILAGDLDGELANLALVIDGFTRFSAEEEYLVDLLHR--KGVEIVIGV--Y 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                + T   +     +S        Q    K +       +     G +S  +  R  
Sbjct: 222 ASQKAYRTSFREGNLYQASVDFLLKLAQTYEVKPVYLAGDSIQSDDAFGKISKILESRY- 280

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
                            D  E  +    +    V +    N++EE   +A ++R  L + 
Sbjct: 281 -----------------DFSETHVELTAEDRFHVEIWSVRNQKEELEYVAKSIRQRLHDG 323

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +    P+S       L SL         
Sbjct: 324 ARYKDIRLLLGDVEAYQLQLKTIFAQYQIPFYLGRSEPMSQHPLVQFLESLERLKRYNFQ 383

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       G+     +   +  +          
Sbjct: 384 TEDLLNLLKTGL----------------------YGSLRQEGLDSFEQYLRFAEIKGAAK 421

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                  +R  + D +   ++   ++  +      ++   +   +   S   ++ +    
Sbjct: 422 LGRDFTINRQEKFDLKRLNVMRRSLITPLLDFFKSRSQTVAGLLDKFTSFIKEVRLDDNL 481

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
              L+   +      EE  KT   +  ++ +     K    +++ +I   +     +   
Sbjct: 482 MGLLEGASQQEVERQEEVWKTFCHVLEQLAQVFDGSKLKIDDFLALILSGMLLAKYRVVP 541

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                + +        +    +   GL +   PK       LS   +  LN  T ++   
Sbjct: 542 ATVDVVTVQSYDLIEPMAAPYVYAIGLTQERLPKLAQNKSLLSDEERQKLNQATGDESEL 601

Query: 683 QAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVL--------G 723
           Q A       + F   +     T  L+ +  +  N +    S +L  L +          
Sbjct: 602 QVASSENLKKNRFAALSLLNSATEDLVLSAPVLTNEVEDAMSSYLTELEIAPISLPIISK 661

Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP--------------------- 762
                 +     +  L     L        +   +                         
Sbjct: 662 QPQASSDDIGTYRALLARVIDLYQEDIDREWTPEEQTFWAVAIRVLRKKLVAEGISIPQI 721

Query: 763 ------------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                                QP   S S + +   + YA + + +L++     +   PD
Sbjct: 722 SKELKTEPLKSETLQALYPSEQPLRLSASALNEYFKNQYAYFLKYVLRIQ--EEWTIQPD 779

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQI--IDSHFEKENLPPHIDIIWRHLFHK 862
               G   H I  +++++ + ++     H   +    ++ FE            R L   
Sbjct: 780 ARSHGIFLHRIFEKVMQEHLEQDFDTRLHRAMEETSWEAEFESIYGENGETQFARRLLLD 839

Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAK-------MAIESIGIHLTGFADRIDLLKS-GFVD 914
            + +      +    +E I              +      + ++G  DRID LK  G + 
Sbjct: 840 TAQATGRILAQSD-GLEVIGEETDFGRGDRPFLLLDNGRALQVSGKVDRIDRLKETGSLG 898

Query: 915 ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
           + DYK+GD     E     ++ QL    AA++       + + +    Y+++ +      
Sbjct: 899 VVDYKSGDTKFSFEKFFNGLNSQLPTYLAAIRE-MPEYQEDKGIFGAMYLQMTE-----P 952

Query: 974 ITNDKKKYSADELSEKSLK 992
           + + K+  + DE  ++ +K
Sbjct: 953 LASLKETKALDEAVKQVMK 971


>gi|283956858|ref|ZP_06374331.1| hypothetical protein C1336_000320020 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791584|gb|EFC30380.1| hypothetical protein C1336_000320020 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 788

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 125/389 (32%), Gaps = 30/389 (7%)

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             +E    +      I +          E I +    I   ++         + ++G LE
Sbjct: 376 EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694
           SR L FD +IL   NE   PK +    FL+  ++    L + ++        +E      
Sbjct: 434 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
             +       E       SR+L  L      DFF       + YL+  +      K    
Sbjct: 494 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546

Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
               P           SFS    L N     Y R IL L       ++    ++G   H 
Sbjct: 547 PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606

Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
           ++    K   N +         +   +   KE    +I  +   +F      F ++E++ 
Sbjct: 607 MLEIYYKNYANNDFD------IKAFANLLNKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660

Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
            S         +     + + +  I L G  DRID  K G + I DYK+G  P       
Sbjct: 661 FSKGFYVAHTELELNNILKLGADSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714

Query: 932 LIDPQLSLEAAALKAG---SFSQIDCRKV 957
               QL+   A         F  ++  ++
Sbjct: 715 --SYQLAFYQALYDENASVGFYDLNSMQI 741


>gi|257869455|ref|ZP_05649108.1| exonuclease RexB [Enterococcus gallinarum EG2]
 gi|257803619|gb|EEV32441.1| exonuclease RexB [Enterococcus gallinarum EG2]
          Length = 1191

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 112/963 (11%), Positives = 251/963 (26%), Gaps = 142/963 (14%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF--LKIASKYWTERL--VEL 202
               + L  +   ++T     EDLH L           A  F  L +  + +   +   EL
Sbjct: 120  GFIQQLLSLYQEMQTSNIATEDLH-LGGTMNRSNGEDALKFSELALIFQRFELEMVTREL 178

Query: 203  NASSPVGYQIALMRA------EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
                P+      ++               ++   II+G +        ++  +    +  
Sbjct: 179  QVEQPLALLTRYLQQGSKPNELMNDRPDLSESLFIISGFSAFSTQEQSVLKELMKQGHVV 238

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            + L  LD   P        E  + +     +  ++ Q  L    + + I       L   
Sbjct: 239  VDLL-LDHGYPQ-------ELPSPLDLFYESGRSYHQLFLDARTENVAI------YLDQK 284

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
             +    + + + K+    +          +      Q     + + +  N  EE   +A 
Sbjct: 285  LSPSEAQQVTLEKAAAYNEVESFWRKTQNQLHYQQQQPVSPYLEMWKVGNPEEEVRQMAA 344

Query: 377  ALRMSLDEN------KKKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
             +R  + E        +   ++T       + +      + I   I     ++       
Sbjct: 345  KIRALISEQKGAKLRYRDIQVLTLQPEIYHQYIPTIFKEYEIPFYIDEEQLMAQHPLVEF 404

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPL---------AKFGFPEKYLSRAKNALELVALRGNK 480
            L +             I  L++  L           +        +  +  E  AL  N 
Sbjct: 405  LNAFFACADYGFRLNDIFRLLRTELYLPQAFQQQEDWLAARDAFRQLVDITENQALAHNF 464

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
               D    +  +L        N       +  + + +      +   L+ I    T +  
Sbjct: 465  QGKDWTRERDWLLVDYTLTGENASGIAELTDYTNQLRRYFRQDIFGSLKNIQETKTNREA 524

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
              +    L  +   +  +       + + +       E+  + L  L  + +        
Sbjct: 525  AGALYQFLLSAGVEQQLIHWRDQ-AISQGKLEQARNHEQTWQALIDLLDEFVAIYGDDPF 583

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                + +++   ++  T          + I      R        + GLNE V P+    
Sbjct: 584  EQSLFEEVLMTGLENLTFGKIPTAIDQVNINRFDLVRPRQAKITFVPGLNETVLPRRIEN 643

Query: 661  NPFLSRVMQSDLNLK------TAEKYIGQAA---HDFEM--ANGTRHLIYTRSLRENNIP 709
               L+   +  LN          +  I  +A     F     + T  L  + +   +   
Sbjct: 644  KTLLTNEERQHLNQLFAGEKYLRDTIIESSAKEPFLFYAILLSSTDKLYLSYACNFDTQQ 703

Query: 710  TIA-SRWLQRLLVLGGTDFF-----------------------------DNLKKRGQCYL 739
             I  S +L RLL                                        +K  Q   
Sbjct: 704  NIKLSPYLARLLEWLDVSLQDRGILSLTSDPEAYVGTYRGLIYQLNNLSQQARKERQNLP 763

Query: 740  DWTRKLDYTTKQPHYKRPK------------PFPPLEAQPRTY-------SFSEIKQLIN 780
               ++          K+              P P  + +           S S+++    
Sbjct: 764  AQWQRFKQALLHSPEKQLALRVFESQTHQNIPVPLSQDKAVALYGPSIYSSISQLETFYQ 823

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI-----------NKNTP 829
              Y  +    L+L          +    G  FH+ +   +K  I           ++   
Sbjct: 824  CEYKYFVSYGLRLKERE--IYGLNSAMTGEFFHDALDRFVKVLISENISLTQLTMDQRLQ 881

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPA 887
             +  ++++I                  R+   K      +   ++  +         +  
Sbjct: 882  FVEKVLQEIFGEVRYTLLSSSARMNFIRYQLGKTIQRVAWALTKQGQKMHFSPQKTEVLF 941

Query: 888  ----------KMAIE---SIGIHLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETAQ 930
                       + +       +H+ G  DR+D    +      + DYK+         A 
Sbjct: 942  GQIAGAQGINGIELPLSSGGKLHVRGKIDRVDAAKTEEEQWLSVVDYKSSSREFDLTEAY 1001

Query: 931  KLIDPQLSLEAAALKAGSFS--QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
              +  QL          +      +  + A  +Y+ +           D +K S +E  +
Sbjct: 1002 YGLAMQLITYLDVALNDAVQLVGTENVRPAGAYYLHV------HDPVLDGQKSSEEERLK 1055

Query: 989  KSL 991
            +  
Sbjct: 1056 QFK 1058


>gi|157415706|ref|YP_001482962.1| hypothetical protein C8J_1387 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386670|gb|ABV52985.1| hypothetical protein C8J_1387 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748347|gb|ADN91617.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
           jejuni M1]
          Length = 788

 Score =  162 bits (409), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 127/389 (32%), Gaps = 30/389 (7%)

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             +E    +      I +          E I +    I   ++         + ++G LE
Sbjct: 376 EKQELVYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694
           SR L FD +IL   NE   PK +    FL+  ++    L + ++        +E      
Sbjct: 434 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
             +       E       SR+L  L      DFF       + YL+  +      K    
Sbjct: 494 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546

Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
               P           SFS    L N     Y R IL L       ++    ++G   H 
Sbjct: 547 PIKAPILKHNPFEFALSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606

Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
           ++    K   N +         ++  +  +KE    +I  +   +F      F ++E++ 
Sbjct: 607 MLEIYYKNYANNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660

Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
            S         +     + + +  I L G  DRID  K G + I DYK+G  P       
Sbjct: 661 FSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714

Query: 932 LIDPQLSLEAAALKAG---SFSQIDCRKV 957
               QL+   A         F  ++  ++
Sbjct: 715 --SYQLAFYQALYDENANVGFYDLNSMQI 741


>gi|325694959|gb|EGD36864.1| exonuclease RexB [Streptococcus sanguinis SK150]
          Length = 1093

 Score =  162 bits (409), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 118/923 (12%), Positives = 255/923 (27%), Gaps = 137/923 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L ++   ++T +  + DL  L+  +           L       T  L + +  S
Sbjct: 113 QFIQQLMELYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       A +   +     ++I G T        L+  +     G  ++ G   +
Sbjct: 166 SSQIAAFAQHILAGDTDEELENLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +               
Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISH------------A 261

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
               +F           D  E  +   +   S + +    N++EE   +A ++R  + + 
Sbjct: 262 RAEDAFGRISKVLESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVDSLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       G+    ++   +  +        + 
Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDHFEQYLRFADIKGASK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561
                  +   + D +    +   ++  +      ++   +      +           L
Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +   E ++      EE  K  S +  +  +  +  K    +++ ++   +     +  
Sbjct: 480 TVLLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN  T  +  
Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598

Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721
            Q A         +         T+ L+ +     N +    S +L  L           
Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPTLVNEVEDSMSTYLLELTAAPLSLPIIV 658

Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758
                                 L   +         Q +     R L           P+
Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTTEEQTFWAVAVRVLRKKLAAEGISIPQ 718

Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                                 QP   S S + +     YA + + +L+L     +   P
Sbjct: 719 ISKELKTESLQPETLQALYPHEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861
           D    G   H I  ++++   + +         +      E E++          R L  
Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLL 836

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913
             + +         + IE I             + +E    + ++G  DRID L K+  +
Sbjct: 837 DTARATGRV-LAHPTGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKTESL 895

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+GD     E     ++ QL    AA++  +  Q D        Y+++      D
Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
            I   K   +  +   +S+K L 
Sbjct: 950 PIVALKDTKTLADAVNQSMKPLQ 972


>gi|315930995|gb|EFV09970.1| hypothetical protein CSU_1749 [Campylobacter jejuni subsp. jejuni
           327]
          Length = 788

 Score =  162 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/389 (19%), Positives = 126/389 (32%), Gaps = 30/389 (7%)

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             +E    +      I +          E   +    I   ++         + ++G LE
Sbjct: 376 EKQELVYLIRKELYFIKDLLKNQSLTLKELTHLFFMQISQLSL--SDVGGGKVTVMGLLE 433

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694
           SR L FD +IL   NE   PK +    FL+  ++    L + ++        +E      
Sbjct: 434 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
             +       E       SR+L  L      DFF       + YL+  +      K    
Sbjct: 494 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546

Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
               P           SFS    L N     Y R IL L       ++    ++G   H 
Sbjct: 547 PIKAPILKHNPFEFALSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606

Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
           ++    K   N +         ++  +  +KE    +I  +   +F      F ++E++ 
Sbjct: 607 MLEIYYKNYANNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660

Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
            S         +     + + +  I L G  DRID  K G + I DYK+G  P       
Sbjct: 661 FSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714

Query: 932 LIDPQLSLEAAALKAG---SFSQIDCRKV 957
               QL+   A         F  ++  ++
Sbjct: 715 --SYQLAFYQALYDENANVGFYDLNSMQI 741


>gi|257082925|ref|ZP_05577286.1| exonuclease RexB [Enterococcus faecalis E1Sol]
 gi|256990955|gb|EEU78257.1| exonuclease RexB [Enterococcus faecalis E1Sol]
          Length = 1196

 Score =  162 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 257/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALVLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
            + +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  HPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|293374972|ref|ZP_06621267.1| ATP-dependent nuclease subunit B [Turicibacter sanguinis PC909]
 gi|292646382|gb|EFF64397.1| ATP-dependent nuclease subunit B [Turicibacter sanguinis PC909]
          Length = 1188

 Score =  162 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 119/995 (11%), Positives = 274/995 (27%), Gaps = 168/995 (16%)

Query: 147  WLAKNLADIIDIIETEEKKWEDL-HALKNEKYGMWW----LLAADFLKIASKYWTERLVE 201
                 + ++I   +        L   ++ ++    W    +   + + I    + +  + 
Sbjct: 118  GFISKVGEMIAEFKNYCVTPNQLFQTIQTQQEISNWSVQSVKKINDIAILYDEFEK--LS 175

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
            L           L+  +  +          I G          ++  +  +     ++  
Sbjct: 176  LGRYLMTEDYYTLLSEQIAYSSTIANSDFYIDGYHLFNKQEELILLQLMKYAKSVTIVLT 235

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
             D +  +++++                   P  + +KL   L    E++     +     
Sbjct: 236  HDLNSTSSVFSL------------------PSRTYSKLASQL----EEMGLNYEIQELTE 273

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            G     S        + + + +    + P ++     V   +A N R E   +A  +   
Sbjct: 274  GNHRFKSD-------TALAHLEKQFMQFPTVKSEAKGVHFFQAANSRLEVEEVAKRIHHL 326

Query: 382  LDENK---KKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
            + +        A+ TA     + +      +F I + +     +       +L  + + +
Sbjct: 327  IHKEGYAFNDIAIYTAQSEEYQELIASIFPKFEIPVFLDYKESMLIHPLMVLLYHVFDVM 386

Query: 438  FKLNDFMAIATLVKHPLAK----------FGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
                   ++  ++K  L            F    +   R  + LE   L       D   
Sbjct: 387  MNGWRHESMFMIIKTGLFMDVSQIKKQQSFYEAFQAYQRQVDVLENYCLARQIKKQDWQQ 446

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                V ++                + +    L   +   +      L   KT K      
Sbjct: 447  KDDWVYEKYQGLGRGYVKTDDDLAVEDLLNTLKKQISSLLTSFEKKLKKAKTYKEFAVAT 506

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
             +  +  ++           E  +   L    ++    +  LF +++E G     +   +
Sbjct: 507  FTFLEEAQIPQKLALLESSAEETQHLKLLKQHQQVWNKVLELFEQLVEIGQEEAVSLENF 566

Query: 606  IDIITRLIDGETVKPKIEKSSTLFIL-----------GTLESRLLNFDTLILGGLNEGVW 654
              +    ++  +      +   + +               E+         + G+NEG  
Sbjct: 567  ATVFKAGLEEMSYATVPPRLDQVSVGELRRARYQLVTDLGEAGQYGIKHAFVLGVNEGQI 626

Query: 655  PKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTRH--LIYTR-SLRE 705
            P    ++  LS V +  L         + E+              +    L  +  S  +
Sbjct: 627  PSVMGESSLLSEVEREQLKELGIELAPSLEQSQQDEQFILYTVFTSPKQTLTLSYVSSND 686

Query: 706  NNIPTIASRWLQRL--------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR- 756
                 + S    +L            G +F D+L ++          L    KQ    R 
Sbjct: 687  EGKEFLPSYVYNQLKEMFPLSQEAHIGREFDDDLYEQLTTLNQSVAHLLAHLKQNPAYRS 746

Query: 757  -PKPFPPLEAQPRTY---------------------------------SFSEIKQLINDP 782
              +P      +                                     S S ++      
Sbjct: 747  YYEPLLAYYKEHNPLIYQMVMRILGYENEVTNLDEVLTKKLYSEEIVASVSRLELFNQCE 806

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK------KRINKNTPEINHLMK 836
            +A Y R  L+L      +   D    G L+H  +  +        +     T +    + 
Sbjct: 807  FAHYLRYGLQLKDRE--RYQLDLPHIGELYHEALKRIATMIQKENRTFADLTQDECQTLA 864

Query: 837  QIIDSHFEKENLPPHIDIIWR-----HLFHKISHSFL--EHEEKIQSSIEKIFVNIPA-- 887
            +++     ++ L   +    R          + +  L     +  QS  + +F  +P   
Sbjct: 865  KMVSDELSEQLLYKILKQNKRMMKLTERLTHVVYKTLIGLKYQSSQSEFKPMFFELPFQT 924

Query: 888  ----KMAIESIGI------HLTGFADRIDL--LKSGF---VDITDYKTGDNP-KKETAQK 931
                 + I+S  I       L G  DR+D+   K      + I DYK+     + +    
Sbjct: 925  GKSNGIHIDSRPIGKGFKLSLKGIIDRVDVAKSKDESQAYLRIVDYKSSQQDLELDKVYY 984

Query: 932  LIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             +  QL      +   +   ID   +V  L Y  + +      I+ D +    D   E+ 
Sbjct: 985  GLSLQLLTYLDVVVTNALQLIDMPAEVGGLLYFHVHRPI----ISKDDQDLLRDVALEEQ 1040

Query: 991  LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
            +  L +     +   + ++             +YD
Sbjct: 1041 ILRLHQ--EDFK--MKGYLP-----------DDYD 1060


>gi|315144625|gb|EFT88641.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX2141]
 gi|315160944|gb|EFU04961.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0645]
          Length = 1196

 Score =  162 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIGEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|86151958|ref|ZP_01070171.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
            260.94]
 gi|85841066|gb|EAQ58315.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
            260.94]
          Length = 788

 Score =  162 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 145/457 (31%), Gaps = 59/457 (12%)

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +E    +      I +          E I +    I   ++         + ++G LE
Sbjct: 376  EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694
            SR L FD +IL   NE   PK +    FL+  ++    L + ++        +E      
Sbjct: 434  SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
              +       E       SR+L  L      DFF       + YL+  +      K    
Sbjct: 494  LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                P           SFS    L N     Y R IL L       ++    ++G   H 
Sbjct: 547  PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            ++    K  +N +         ++  +  +KE    +I  +   +F      F ++E++ 
Sbjct: 607  MLEIYYKNYVNNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660

Query: 875  QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
             S         +     + + +  I L G  DRID  K G + I DYK+G          
Sbjct: 661  FSKGFYVAHTELELNNILKLGADSIKLKGTIDRIDSSKEGNL-IIDYKSGKVSSN----- 714

Query: 932  LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                QL+   A         F  ++  ++                    +K  S DEL  
Sbjct: 715  --SYQLAFYQALYDENANVGFYDLNSMQI------------------LHQKAKSLDEL-- 752

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
               + L ++V L+   E  F        + +    Y 
Sbjct: 753  --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 780


>gi|323480351|gb|ADX79790.1| exonuclease RexB [Enterococcus faecalis 62]
          Length = 1196

 Score =  162 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSAADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYNFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLTKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|256962292|ref|ZP_05566463.1| exonuclease RexB [Enterococcus faecalis Merz96]
 gi|293383321|ref|ZP_06629236.1| exonuclease RexB [Enterococcus faecalis R712]
 gi|293387522|ref|ZP_06632071.1| exonuclease RexB [Enterococcus faecalis S613]
 gi|312905828|ref|ZP_07764848.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            DAPTO 512]
 gi|312909117|ref|ZP_07767976.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            DAPTO 516]
 gi|256952788|gb|EEU69420.1| exonuclease RexB [Enterococcus faecalis Merz96]
 gi|291079344|gb|EFE16708.1| exonuclease RexB [Enterococcus faecalis R712]
 gi|291083032|gb|EFE19995.1| exonuclease RexB [Enterococcus faecalis S613]
 gi|310628167|gb|EFQ11450.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            DAPTO 512]
 gi|311290541|gb|EFQ69097.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            DAPTO 516]
          Length = 1196

 Score =  162 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 117/989 (11%), Positives = 262/989 (26%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTSDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQHA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAH--DFEMANGTRHLIYTR-SLRENNIPTIASRWLQRLL---------------- 720
             I Q  +      ++    L  T  S+++       S + + +                 
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 721  -------------VLGGTDFFDNLKKRGQC-------YLDWTRKLDYTTKQPHYKRP--- 757
                              +     ++R +        +L+  + L      P  K+    
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLTFWLNMEKALMNQPIAPLAKQVFES 787

Query: 758  ------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                            PL  +    S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLSVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|327474834|gb|EGF20239.1| exonuclease RexB [Streptococcus sanguinis SK408]
          Length = 1093

 Score =  162 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 117/923 (12%), Positives = 253/923 (27%), Gaps = 137/923 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L       T  L + +  S
Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       A +   +     ++I G T        L+  +       ++       
Sbjct: 166 SSQIAAFAQHILAGDTDEELENLALVIDGFTRFSAEEEYLVGLLHRKGVEIVIGTYASKK 225

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
              A +        ++              L KL +   +K + +               
Sbjct: 226 AYRAAFREGNLYQASVDF------------LRKLAEDYQVKPDYIPH------------A 261

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
              ++F           D  E  +   +   S + +    N++EE   +A ++R  + + 
Sbjct: 262 ESEEAFGRISKILESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 ARYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       G     ++   +  +          
Sbjct: 382 LEDLLNLLKTGL----------------------YGGLTQEELDHFEQYLRFADIKGSAK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561
                  +   + D +    +   ++  +      ++   +      +           L
Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFFQAARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +   E ++      EE  K  S +  +  +  +  K    +++ ++   +     +  
Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN  T  +  
Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598

Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721
            Q A         +         T+ L+ +     N +    S +L  L           
Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658

Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758
                                 L   +         Q +     R L           P+
Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718

Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               + QP   S S + +     YA + + +L+L     +   P
Sbjct: 719 ISKELKTESLQPETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861
           D    G   H I  ++++  ++ +         +      E E++          R L  
Sbjct: 777 DARSHGIFLHRIFEKVLQDDLSADFDRRLARAMEETSREAEFESIYSESGQTRFARQLLL 836

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913
             + +         + IE I             + +E    + ++G  DRID L K+  +
Sbjct: 837 DTARAT-GRVLAHPTGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKTESL 895

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+GD     E     ++ QL    AA++  +  Q D        Y+++      D
Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
            I   K   +  +   +S+K L 
Sbjct: 950 PIVALKDTKTLADAVNQSMKPLQ 972


>gi|257422971|ref|ZP_05599961.1| exonuclease rexB [Enterococcus faecalis X98]
 gi|257164795|gb|EEU94755.1| exonuclease rexB [Enterococcus faecalis X98]
          Length = 1196

 Score =  162 bits (408), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 114/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +           + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEIKKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSAADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|312899587|ref|ZP_07758913.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0470]
 gi|311293266|gb|EFQ71822.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0470]
          Length = 1196

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 254/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALVLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I     +G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGFEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q      +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEALLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LMHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|283953894|ref|ZP_06371424.1| hypothetical protein C414_000020075 [Campylobacter jejuni subsp.
            jejuni 414]
 gi|283794673|gb|EFC33412.1| hypothetical protein C414_000020075 [Campylobacter jejuni subsp.
            jejuni 414]
          Length = 788

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 84/433 (19%), Positives = 138/433 (31%), Gaps = 59/433 (13%)

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                E I +    I   ++         + ++G LESR L FD +IL   NE   PK + 
Sbjct: 400  LTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSI 457

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQR 718
               FL+  ++    L + ++        +E        +       E       SR+L  
Sbjct: 458  NELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSICFVENEEKSK---SRFLDE 514

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            L      +FF       Q YL+  +      K        P           SFS    L
Sbjct: 515  LDF----EFFYETHTHQQAYLNALKLDYEGIKPNLTPIKAPVLKHNPFEFPLSFSRFNLL 570

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
             N     Y R IL L        +    ++G   H ++    K   N +         ++
Sbjct: 571  ENQKRTYYYRYILNLAEPRFLSDESKAKNQGNFIHKMLEIYYKNYANNDFD------IKV 624

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAK--MAIESIG 895
              +  EKE    +I  +   +F      F ++E++  S         +     + + +  
Sbjct: 625  FTNLLEKEYQKYNIGELDLEVFKLKFIQFAKNEKEHFSQGFYVAHTELELNNILKLGTDK 684

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS---FSQI 952
            I L G  DRID  K G + I DYK+G  P           QL+   A     +   F  +
Sbjct: 685  IKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN-------SYQLAFYQALYDQNASVSFYDL 736

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
            +  +                     +K  S DEL     + L ++  L+   E  F    
Sbjct: 737  NSMQ------------------MLHQKAKSLDEL----KERLKDLF-LMSKEEIEF---- 769

Query: 1013 RLSEKSNIQSEYD 1025
                + +    Y 
Sbjct: 770  --ENEQDGYCPYQ 780


>gi|294618394|ref|ZP_06697971.1| exonuclease RexB [Enterococcus faecium E1679]
 gi|291595344|gb|EFF26660.1| exonuclease RexB [Enterococcus faecium E1679]
          Length = 1175

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 113/929 (12%), Positives = 248/929 (26%), Gaps = 137/929 (14%)

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                + L ++   + T   + EDL  L  +        L    LK+    +   L +   
Sbjct: 122  RGFIRQLQELYSELRTGNIQPEDLMLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTQRAL 181

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
            ++        +   A ++       +  I++G +       +L+  +       + L  L
Sbjct: 182  TNE-----DALSILANYMQTQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-L 235

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            D      +   +T            + +  +  +  L+D      E  +           
Sbjct: 236  DRPYTADLPEVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP---------- 283

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                   + L    +    T   +    +       + L EA+N  EE   +A+ +R  +
Sbjct: 284  -------TELQLLQTMWEETSSQKKAAVHKLGGQEHLHLWEAENPTEEVRQLAVEIRRLV 336

Query: 383  ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
               +   +   ++T + +L   +         I   I     +        + SL     
Sbjct: 337  SEENYRYRDIQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDR 396

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSL 491
                   I    K  L      E  L   K   +    +           +Y        
Sbjct: 397  YSYRLSDIMRFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTRE 456

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI- 550
               +                L E+   +  L    +   +  +   KT + +  G     
Sbjct: 457  KDWQFVAYDFEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKKSKTGQEAANGFYQFL 516

Query: 551  --SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
              S   +  +          + +      E+    L  L  + +        +   + +I
Sbjct: 517  IQSGVQQQLLFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEI 575

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            IT  ++  +          + I      R          GLN+ V+P        LS   
Sbjct: 576  ITSGLENLSYGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEE 635

Query: 669  QSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWL 716
            +  LN    +                        +GT  L  + +   + +     S +L
Sbjct: 636  REVLNQALPDGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYL 695

Query: 717  QRLLVLG------------------------------------GTDFFDNLKKRGQ---- 736
            +R+                                          D    + K  Q    
Sbjct: 696  RRITEYLSVPVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKE 755

Query: 737  -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYAR 788
                  + ++  ++  + +  +     P    E         S S ++   N  Y  + +
Sbjct: 756  LVLNSSWRNFALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQ 815

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDS 841
              LKL               G  +H  +    K         +N +  +     ++++  
Sbjct: 816  FGLKLKER--TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDAQRRDFTEKVLQE 873

Query: 842  HFEK---ENLPPHIDIIW-RHLFHKISH--SFLEHEEKIQSSIEKIFVNIPAK------- 888
             F +   E L     + + R+   +     ++   ++   + +  +   I          
Sbjct: 874  VFGELRFEILDSSARMNYIRYQLGQTIQKVAWALQKQSKNTGMHPLQTEILFGQIAGAKG 933

Query: 889  ---MAIE---SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLS 938
               + +       +H+ G  DRID+        + + DYK +G +     A   +  QL 
Sbjct: 934  ITGLELPLSNGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLL 993

Query: 939  LEA--AALKAGSFSQIDCRKVANLFYIRL 965
                 A + A   +     K A  +Y+ +
Sbjct: 994  TYLDVALMDAVRLTGKAAVKPAGSYYLHV 1022


>gi|29375688|ref|NP_814842.1| exonuclease RexB [Enterococcus faecalis V583]
 gi|227552896|ref|ZP_03982945.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis
            HH22]
 gi|81437088|sp|Q836J9|ADDB_ENTFA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|29343149|gb|AAO80912.1| exonuclease RexB [Enterococcus faecalis V583]
 gi|227177968|gb|EEI58940.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis
            HH22]
 gi|315573704|gb|EFU85895.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0309B]
 gi|315582681|gb|EFU94872.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0309A]
          Length = 1196

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|315148449|gb|EFT92465.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX4244]
          Length = 1196

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSAADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNSWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|257440574|ref|ZP_05616329.1| putative ATP-dependent deoxyribonuclease subunit B [Faecalibacterium
            prausnitzii A2-165]
 gi|257196897|gb|EEU95181.1| putative ATP-dependent deoxyribonuclease subunit B [Faecalibacterium
            prausnitzii A2-165]
          Length = 1117

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 113/941 (12%), Positives = 234/941 (24%), Gaps = 131/941 (13%)

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
            A  ID +++       L  L               L +  + +   L       P     
Sbjct: 120  AQTIDELKSAGLSGRQLAQLAGACGAE--SGKLSELALIFQGYETLLARSG-MDPSDRLE 176

Query: 213  ALMRAEAEHLMKG------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                   E L +           + I           RL+  +        V    D   
Sbjct: 177  LAGARLEEALARHSLPEFLRDRAVFIDEFDTFNAPKKRLLGAMLAALPSVTVALCDD--- 233

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                             S  + +      L +L      +    + L         R+  
Sbjct: 234  --------GAPLLPGDLSLFSGAKQVAAQLRQLARKNGAEVAVPQLLRKDLRH---RNAP 282

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA---LRMSLD 383
               +      +     D              +V L  A +  EEA + A A   L     
Sbjct: 283  GLAAVAELLETGSCTADAPA----------GEVRLFAAPSREEEARAAAGAVRRLMRQGV 332

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
               K + +          V+ E     I +          +  ++ + +LL      +  
Sbjct: 333  RCGKIAVVCRDIAKYRAAVRYEFRMAEIPLYCDEPTTPEFSAPATAVRALLEIARGADLT 392

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
              + TL K  L      +                  +  +               +    
Sbjct: 393  ENLTTLAKTGLCALSEEQVCALENYAYTWAPTAAAWREKF--------------ERSPKG 438

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                  +     ++E A      ++  +          N+   + +     K      Q 
Sbjct: 439  FGEQELTEEDLRNRERAEHARALLVGAVDAFRAKVRGVNAEAISRAAYFCLKTLGAEEQQ 498

Query: 564  VC-----LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                     +           E   +  L +++            E+ D+   L+    +
Sbjct: 499  AAQVKAIRADRGIPAAEEAAREWNVVMGLLNEMAHLLGEQTVTVAEYEDLFGLLLRSSDL 558

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-----N 673
                +    + +    + RL   D + + GL EG +P    +   L+   +  L     +
Sbjct: 559  GHIPQTLDAVVLASAGKMRLDAPDYVFVLGLAEGEFPAAPGEVGLLTHADRDALMAQEID 618

Query: 674  LKT-AEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRLLVLGGTDFF-- 728
            L    E  + +    F  A       L  +    +      A   L   L     +    
Sbjct: 619  LPDCFENRVVREQVCFYKALTAPAKGLWLSWPKGQGQTLCAALEPLVEALAPAAPELELT 678

Query: 729  ----------------------------DNLKKRGQCYLDWTRKLDYTTKQPH--YKRPK 758
                                        + L   G+        L               
Sbjct: 679  DLAATPADGLDCLGGGWPLTETERASLTEALHNPGETEPQGLALLRRMADTAPRQVHDLP 738

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                L  +    S S++++     Y  + + +L L      + +      GTL H ++  
Sbjct: 739  ALEALLGRKLRISPSQLEKYYTCRYGYFLQYVLGLRPRR--RAELSADQSGTLMHWVLQM 796

Query: 819  LIKKRINK-------------NTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKIS 864
             +                   +   +  L   ++D + ++                 K  
Sbjct: 797  ALDPHPGPDNPMAALEPFMELDDEAMASLAALLVDEYAKRYLPEDTARFAYLLSRLKKSM 856

Query: 865  HSFLEHEE--KIQSSIEKIFVNIP---AKMAIE--------SIGIHLTGFADRID--LLK 909
             S L +    + QSS + +   +     + A+            + L G  DR D  + +
Sbjct: 857  TSLLLYLRDEQRQSSFKPVACELKIGRGEDAVPAQVYHLSDGRTVQLVGTVDRADEWVEE 916

Query: 910  SGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
             G   V + DYKTG      +     +D Q+ L   +L      +    + A + Y  L 
Sbjct: 917  DGTRWVRVVDYKTGTKKLDLKEVYCGLDCQMLLYLFSLTRDKSGRFTGAEPAGVLY--LL 974

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
                 +  T +K  +S +   +  +++  ++   +   E  
Sbjct: 975  ADPAPETTTREKAAHSVEYKLDGLVRDEQKLFDAMDADETG 1015


>gi|229550394|ref|ZP_04439119.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis
            ATCC 29200]
 gi|307274586|ref|ZP_07555766.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX2134]
 gi|312951364|ref|ZP_07770262.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0102]
 gi|229304516|gb|EEN70512.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis
            ATCC 29200]
 gi|306508738|gb|EFM77828.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX2134]
 gi|310630624|gb|EFQ13907.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0102]
 gi|315153690|gb|EFT97706.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0031]
 gi|315156547|gb|EFU00564.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0043]
 gi|315158290|gb|EFU02307.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0312]
          Length = 1196

 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSAADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|306827619|ref|ZP_07460899.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes ATCC 10782]
 gi|304430182|gb|EFM33211.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes ATCC 10782]
          Length = 1071

 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 135/986 (13%), Positives = 277/986 (28%), Gaps = 140/986 (14%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P        S        + L ++   ++  +
Sbjct: 75   SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                DL  L             D +KI     T  + +           A          
Sbjct: 130  LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            + +K  ++I G +        L+S + N+    I+   +        +         I  
Sbjct: 184  QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +    S H    LA+                ++       + V   +F           D
Sbjct: 235  NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              +      +      +L +  +++EE   +A ++R  L E  +   ++    ++     
Sbjct: 281  FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340

Query: 404  LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                   +F I   +    P++       + SL  +         I  ++K  L      
Sbjct: 341  QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                      D+                       ++   +   
Sbjct: 401  -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577
              L +     + PL     ++       S+ D   L    +   +N+      +L     
Sbjct: 436  DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE  K  + + +         K    + + +I   +     +        + I      +
Sbjct: 494  EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686
              +   +   GL +  +PK    +  LS   ++ +N     ++   A           A 
Sbjct: 554  PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725
                A  T+ L+ +     N      S +L+ L+  G                       
Sbjct: 614  SLFNA-ATKELVLSVPTVINETFDDLSPYLKELISFGLPLLDKGKNYLSYDNSDIGNYKA 672

Query: 726  -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760
                       D  +   +    +    R L    ++   + P                 
Sbjct: 673  LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732

Query: 761  -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                +  P   S + +    N+ Y  + + +L L+        PD    G   H +   L
Sbjct: 733  VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790

Query: 820  IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +K    +               +S F++             +   I  S      ++  +
Sbjct: 791  MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936
            I+ I       + +    I + G  DRID L  G + I DYK+  N     T    + PQ
Sbjct: 850  IKVIDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L+   AALK  +   I+  ++    Y+ L Q  K+D +T  +   +  E   K+L     
Sbjct: 909  LATYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQS 1022
               +    E+  +S      K+ + S
Sbjct: 962  YKGIFSEVEKEHLSTGAYQTKNALYS 987


>gi|300859675|ref|ZP_07105763.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TUSoD Ef11]
 gi|300850493|gb|EFK78242.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TUSoD Ef11]
          Length = 1196

 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSAADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDREVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|315170963|gb|EFU14980.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX1342]
          Length = 1196

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 253/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++      S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSRYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALVLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTSDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I      G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGFGGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEALLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|15674821|ref|NP_268995.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes M1 GAS]
 gi|81533820|sp|Q9A0H4|ADDB_STRP1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|13621953|gb|AAK33716.1| putative ATP-dependent exonuclease, subunit B [Streptococcus pyogenes
            M1 GAS]
          Length = 1071

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 136/986 (13%), Positives = 278/986 (28%), Gaps = 140/986 (14%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P        S        + L ++   ++  +
Sbjct: 75   SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                DL  L             D +KI     T  + +           A          
Sbjct: 130  LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            + +K  ++I G +        L+S + N+    I+   +        +         I  
Sbjct: 184  QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +    S H    LA+                ++       + V   +F           D
Sbjct: 235  NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              +      +      +L +  +++EE   +A ++R  L E  +   ++    ++     
Sbjct: 281  FSQVDWQLQKSDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340

Query: 404  LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                   +F I   +    P++       + SL  +         I  ++K  L      
Sbjct: 341  QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                      D+                       ++   +   
Sbjct: 401  -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577
              L +     + PL     ++       S+ D   L    +   +N+      +L     
Sbjct: 436  DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE  K  + + +         K    + + +I   +     +        + I      +
Sbjct: 494  EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686
              +   +   GL +  +PK    +  LS   ++ +N     ++   A           A 
Sbjct: 554  PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725
                A  T+ L+ + S   N      S +L+ L+  G                       
Sbjct: 614  SLFNA-ATKELVLSVSTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKA 672

Query: 726  -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760
                       D  +   +    +    R L    ++   + P                 
Sbjct: 673  LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732

Query: 761  -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                +  P   S + +    N+ Y  + + +L L+        PD    G   H +   L
Sbjct: 733  VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790

Query: 820  IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +K    +               +S F++             +   I  S      ++  +
Sbjct: 791  MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936
            I+ I      ++ +    I + G  DRID L  G + I DYK+  N     T    + PQ
Sbjct: 850  IQVIDQEKNFQLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L    AALK  +   I+  ++    Y+ L Q  K+D +T  +   +  E   K+L     
Sbjct: 909  LMTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQS 1022
               +    E+  +S      K+ + S
Sbjct: 962  YKGIFSEVEKEHLSTGAYQTKNALYS 987


>gi|319939428|ref|ZP_08013788.1| ATP-dependent helicase/deoxyribonuclease subunit B [Streptococcus
           anginosus 1_2_62CV]
 gi|319811414|gb|EFW07709.1| ATP-dependent helicase/deoxyribonuclease subunit B [Streptococcus
           anginosus 1_2_62CV]
          Length = 1090

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 120/940 (12%), Positives = 265/940 (28%), Gaps = 137/940 (14%)

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E  L +           + L ++   ++  +  + DL  L  ++        AD +KI
Sbjct: 97  MEEHDLQVYGGIRTDTQFIQQLVELYHELQAAQMTFADLDYLDEDE------KKADLIKI 150

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGSTGSIPATARLMSTV 249
                 + L +    S     +      A  + K  +G  ++I G T      A L+  +
Sbjct: 151 LQLVTHQ-LNQSEFISESNIMVFANHITAGDVDKELQGLALVIDGFTRFSAEEAYLIELL 209

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
            +   G  ++ G+  +     +     +     +S           L  L +  ++K  +
Sbjct: 210 HS--KGVEIIIGV--YASEKAYRATFREGNLYQASVDF--------LRHLANEYEVKP-E 256

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            +      +     S ++   +           D  + ++   ++  S V +    N++E
Sbjct: 257 YRPATQPDDAFGNISKLLESRY-----------DFSDVELELTEQDRSHVQIWSTVNQKE 305

Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLH 426
           E   +A ++R  + +    K   L+  D    R        ++ I   +     ++    
Sbjct: 306 ELEYVAKSIRQRVHDGARYKDIRLLLGDVEAYRLQLKTIFDQYQIPFYLGRSESMAHHPL 365

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              + +L+           +  LVK  L                 EL          D+ 
Sbjct: 366 VQFIEALVRLKRYNFRTEDLLNLVKTGLYGH----------LKQEELDLFEQYIRFADVK 415

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            +     D    Q     + H      +    L              L  +     +   
Sbjct: 416 GISKFSKDFTHNQHQKFDLIHINQLRKKIVTPLLEFFKSRSQTATGLLQKFHQFLTTISF 475

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
           + + +     T                    EE  K    +  +     S  K    +++
Sbjct: 476 SQNFAGLVDFTN------------PQDQERQEEVWKAFCHVLEQFASVFSASKVKLDDFL 523

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            ++   +     +        + +        L+   +   GL +  +PK       LS 
Sbjct: 524 TLVQSGMLLSNYRTIPATVDVVTVQSYDLIEPLSSPFVYAVGLTQDYFPKIVQNKSLLSD 583

Query: 667 VMQSDLNLKTAEK-------YIGQAAHDFEMA----NGTRHLIYTRSLRENNIPTIASRW 715
             +  LN  T E+             + F            L+ +     N I    S +
Sbjct: 584 EERLRLNEATDERSELLIAAQENLQKNRFVALSLLNAAMDRLVLSTPQIVNEIENNISPY 643

Query: 716 LQRLLVLGGTDFFDNLKKRG--------QCYLDWTRKLDYTTK----------------- 750
           L  L         +  + +         +  L    +L+                     
Sbjct: 644 LLELHEQPIGLPIEVKRSQATSDDIGTYRALLARVIELNQGDIDRERSLTEKEQTFWSVA 703

Query: 751 ------------------------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                                   +   ++         Q    S S + +   + YA +
Sbjct: 704 VRVLRKKLESEGISIPNVTSSLTTETLSEQTLQALYPPHQAFLLSASALTEFYRNQYAYF 763

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844
            + +L L         PD    G   H +  ++++++ ++          Q    ++ F+
Sbjct: 764 LKYVLALQEEMTIH--PDARSHGNFLHRVFEKVMQEQSSEPFDNRLEKAIQETSQEAEFK 821

Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAI-ESIGIH 897
                    +    +    + +   H  +    +E I             + + +   + 
Sbjct: 822 TLYTENAEALFAHEVLLDTARAT-GHVLERNDLVETIQEEAVFGQEETNVLTLSDGRNLQ 880

Query: 898 LTGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
           + G  DRID LK  G + + DYK+   N   +     ++ QL    AALK  S+   +  
Sbjct: 881 IRGKVDRIDRLKIDGSLGVVDYKSSDTNFDFQKFFNGLNSQLPTYLAALKQESWMN-EEA 939

Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                 Y+++        +    K  S  +  ++++KNL 
Sbjct: 940 HAFGAMYLQMTN-----PLVPLAKTKSQGDAVKEAMKNLE 974


>gi|229056866|ref|ZP_04196262.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH603]
 gi|228720394|gb|EEL71967.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH603]
          Length = 1171

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 119/1040 (11%), Positives = 276/1040 (26%), Gaps = 172/1040 (16%)

Query: 58   QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102
             E++ E  +    K+ +  +P   +              G +  + F+    L++ +   
Sbjct: 20   HEVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V    RL      + +   K+ +  KD      LS+    A      ++L  +I   +  
Sbjct: 79   VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215
                 +++ +    +                 L++    +   L+         Y   L+
Sbjct: 134  NVTPSNVYEMWQQLDTHSSSAEQKLLANKVYDLQLLYDDFERALIGKYL-DSEDYLQLLI 192

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
               ++         I I G     P    ++  +        +   +D        N + 
Sbjct: 193  EKLSDS-EYVKGAEIYIDGFHSFSPQELEIVRGLMKLGTRVTITLTIDEKTLAQPVNELD 251

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   +              ++     I+ E    L         R    +   L   
Sbjct: 252  LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALVHLETH 297

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALI 392
                 N               + V +  A N R E   +A  +R  +   D   +  A++
Sbjct: 298  YEARPNEKYHGE---------ASVTISTAANLRAEVEGVAREIRRLVADEDYRYRDIAVL 348

Query: 393  TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              +  +    ++   T + I   I    P+S       + S L  I     + A+   VK
Sbjct: 349  LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408

Query: 452  HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----K 489
              L       K   R                     + +    R  ++  D  ++    +
Sbjct: 409  TELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDASEMITDSE 468

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543
              + ++I   ++    P  + +   +     + + + +   +  L         + +   
Sbjct: 469  REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRVHAEE 528

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK---- 599
                L  +D  ++    +  +                   + S   + ++  +       
Sbjct: 529  NGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKMSLSMFTEVMSTGLEALQFANIPPSLDQ 588

Query: 600  -----ANAIEWIDIITRLIDGETVKPKIEK----------------SSTLFILGTLESRL 638
                  +     DI    I G                         ++ + +  T    L
Sbjct: 589  VLVANIDHSRLSDIKATFIIGVNEGVIPAAPMDEGMLSDEERNVLTAAGIELAPTTRQTL 648

Query: 639  LNFDTLI---LGGLNEGVWPKNTAKN----PFLSRVMQSDLNLKTAE--------KYIGQ 683
            L    ++   +   +E ++      +      L+      +     +             
Sbjct: 649  LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPDVKESFITNDVNDL 708

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +  +      T  +  +  +++           +R    G  DF+ ++        +W +
Sbjct: 709  SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761

Query: 744  KLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            K         Y+             L       S S ++      YA +A+  L L    
Sbjct: 762  KSSRVLSSLFYRNRAQKLSTDVSRDLYGDTIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821

Query: 798  HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847
             F    D  D G LFH  +  +                K    ++ L+ + I    +++ 
Sbjct: 822  IF--KLDAPDIGELFHAALKRIADKLLRENRTWADLSIKECEHLSTLVIEEIAPLLQRQI 879

Query: 848  LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898
            L       +      +I    S +  E    S    + + +P  M    ++  +   L  
Sbjct: 880  LLSSNRHFYLKQKLQQIIFRTSLILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFALAN 939

Query: 899  ------TGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                   G  DR+D  +      + I DYK +            +  Q+      + + +
Sbjct: 940  GVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999

Query: 949  ---FSQIDCRKVANLFYIRL 965
                 +      A + Y  +
Sbjct: 1000 HTWMKKGSTASPAGVLYFHI 1019


>gi|256965487|ref|ZP_05569658.1| exonuclease RexB [Enterococcus faecalis HIP11704]
 gi|256955983|gb|EEU72615.1| exonuclease RexB [Enterococcus faecalis HIP11704]
          Length = 1196

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTTDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|325687713|gb|EGD29734.1| exonuclease RexB [Streptococcus sanguinis SK72]
          Length = 1093

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 120/923 (13%), Positives = 257/923 (27%), Gaps = 137/923 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L       T  L + +  S
Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       A +   +     + I G T        L+  +     G  ++ G   +
Sbjct: 166 SSQIAAFAQHILAGDTDEELENLALAIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +   G          +
Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISHAGAEDAFGRISKV 273

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
           + S+        ++  TD             S + +    N++EE   +A ++R  + + 
Sbjct: 274 LESRYDFSEQAVEVSETDR------------SQLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 VRYKDIRLLLGDVEAYQFQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       G+    ++   +  +          
Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDHFEQYLRFADIKGAAK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN-STCGNLSISDWTKLTVTCL 561
                  +   + D +    +   ++  +      ++          +           L
Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTTSGLLAKFTEFVQVARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +   E ++      EE  K  S +  +  +  +  K    +++ ++   +     +  
Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN  T  +  
Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598

Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721
            Q A         +         T+ L+ +     N +    S +L  L           
Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPISLPIIV 658

Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758
                                 L   +         Q +     R L           P+
Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718

Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               + QP   S S + +     YA + + +L+L     +   P
Sbjct: 719 ISKELKTESLQSETLQALYPQDQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFH 861
           D    G   H I  +++++  + +         +    ++ FE            R L  
Sbjct: 777 DARSHGIFLHRIFEKVLQEDSSADFDRRLAQAMEETSRETEFESIYSESGQTRFARQLLL 836

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913
             + +         + IE I             + +E    + ++G  DRID L K+  +
Sbjct: 837 DTARAT-GRVLAHPTGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKTESL 895

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+GD     E     ++ QL    AA++  +  Q D        Y+++      D
Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
            I   K   +  +   +S+K L 
Sbjct: 950 PIVALKDTKTLSDAVNQSMKPLQ 972


>gi|209559148|ref|YP_002285620.1| Putative ATP-dependent exonuclease, subunit B [Streptococcus pyogenes
            NZ131]
 gi|251764625|sp|B5XKR3|ADDB_STRPZ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|209540349|gb|ACI60925.1| Putative ATP-dependent exonuclease, subunit B [Streptococcus pyogenes
            NZ131]
          Length = 1071

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 132/986 (13%), Positives = 271/986 (27%), Gaps = 140/986 (14%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P        S        + L ++   ++  +
Sbjct: 75   SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                DL  L             D +KI     T  + +           A          
Sbjct: 130  LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            + +K  ++I G +        L+S + N+    I+   +        +         I  
Sbjct: 184  QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +    S H    LA+                ++       + V   +F           D
Sbjct: 235  NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              +      +      +L +  +++EE   +A ++R  L E  +   ++    ++     
Sbjct: 281  FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340

Query: 404  LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                   +F I   +    P++       + SL  +         I  ++K  L      
Sbjct: 341  QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                      D+                       ++   +   
Sbjct: 401  -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577
              L +     + PL     ++       S+ D   L    +   +N+      +L     
Sbjct: 436  DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE  K  + + +         K    + + +I   +     +        + I      +
Sbjct: 494  EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686
              +   +   GL +  +PK    +  LS   ++ +N     ++   A           A 
Sbjct: 554  PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF------FDNLKKRGQCYLD 740
                A  T+ L+ +     N      S +L+ L+  G                    Y  
Sbjct: 614  SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIANYKA 672

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRT------------------------------- 769
               ++    +Q   +                                             
Sbjct: 673  LLSQIIAINRQDLIEMADQDKMFWTGVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732

Query: 770  ----------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                       S + +    N+ Y  + + +L L+        PD    G   H +   L
Sbjct: 733  VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790

Query: 820  IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +K    +               +S F++             +   I  S      ++  +
Sbjct: 791  MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936
            I+ I      ++ +    I + G  DRID L  G + I DYK+  N     T    + PQ
Sbjct: 850  IQVIDQEKNFQLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L    AALK  +   I+  ++    Y+ L Q  K+D +T  +   +  E   K+L     
Sbjct: 909  LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQS 1022
               +    E+  +S      K+ + S
Sbjct: 962  YKGIFSEVEKEHLSTGAYQTKNALYS 987


>gi|256958609|ref|ZP_05562780.1| exonuclease RexB [Enterococcus faecalis DS5]
 gi|257078037|ref|ZP_05572398.1| exonuclease RexB [Enterococcus faecalis JH1]
 gi|294780983|ref|ZP_06746335.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            PC1.1]
 gi|307268774|ref|ZP_07550142.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX4248]
 gi|256949105|gb|EEU65737.1| exonuclease RexB [Enterococcus faecalis DS5]
 gi|256986067|gb|EEU73369.1| exonuclease RexB [Enterococcus faecalis JH1]
 gi|294451929|gb|EFG20379.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            PC1.1]
 gi|306514902|gb|EFM83449.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX4248]
 gi|315031590|gb|EFT43522.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0017]
 gi|315034968|gb|EFT46900.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0027]
          Length = 1196

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 257/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTTDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYNFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAH--DFEMANGTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +      ++    L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|145596261|ref|YP_001160558.1| UvrD/REP helicase [Salinispora tropica CNB-440]
 gi|145305598|gb|ABP56180.1| UvrD/REP helicase [Salinispora tropica CNB-440]
          Length = 1144

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 111/1088 (10%), Positives = 236/1088 (21%), Gaps = 155/1088 (14%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS---TILPIIKSLGDV 84
             TLVE         +    + +   ++R    LR                 P++++    
Sbjct: 64   ATLVEAVAARVAEGVDPERILVLTFSRRQATGLRQRIEARIAGGGHRVLREPLVRTFPAY 123

Query: 85   VEEKFTADLLLSYNL-NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                               ++  ++ L +  L+ +   +      D  P           
Sbjct: 124  AFGLLRRAAAERGEPSPRLLTGPEQDLIIRELLDLVGEE-----PDADPVGWPEDLRPAL 178

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                 A  L D++           +L  L        W  AA FL+        R V   
Sbjct: 179  RTRAFAAQLRDLLMRAAERGVGPVELARLGERLGRADWPAAARFLREYVAVLALRDVGNR 238

Query: 204  ---ASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
               A  P     +      +        +     + +     + PA   L++TVA     
Sbjct: 239  GSIAYDPAELVRSATGMLLDDPALLAAERRRLAHVYVDEYADTDPAQQELLATVAGGGKA 298

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +VL   D    T  +                 ++    +              +     
Sbjct: 299  LVVLA--DPDSSTYAFRGADPGGVVTFPHRFRTASGAPAAQVVFTTSYRAGPRLLAAHAR 356

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
            ++  + G                                      +    +   EA  +A
Sbjct: 357  LARRLRG-------------------PATHRRTRALPAAAAGAAEVRTFRSAASEAAWLA 397

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-----IDISAGIPLSTTLHSSIL 430
             ALR +   +    + +        R    L R         +     +PL      + L
Sbjct: 398  HALRAAHLLDGVPWSEMAVLVRSTGRALPSLRRALHAAGVPTVVHGEDLPLHLQPAVAPL 457

Query: 431  TSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSR---------------------- 466
              LL         D  A   L+  PL       +   R                      
Sbjct: 458  LLLLRCALAPDRLDEEAAVALLHSPLGGADPLAERRLRQGLRVMALAAGDRRPSGELIVE 517

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--- 523
            A      +A    + +     +  L+     T                    LA L    
Sbjct: 518  ALRDPAELAGIDRRWAEPAQTVAGLLAVTRETAARPGATAEEVLWAVWRVSGLAELWSAA 577

Query: 524  -------------------------VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                                     +D ++        +          + +       +
Sbjct: 578  LARTPAAAGEGEVARRRRAEAADRDLDAVMVLFDAAARFTDRLPGARVEVFLDHVLGQDL 637

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII-TRLIDGET 617
                     +      L      K L      +      +  +      ++ +  +    
Sbjct: 638  PADTLAPTADRGDAVRLLTAHAAKGLEWDLVAVAGVQEGVWPDLRLRGSLLGSERLVDVL 697

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                  +   + ++G   + L     L    +          +   +S V  + +     
Sbjct: 698  AGRSAGEGRRVSVVGQTSALLDEERRLFHVAVT------RARRRLMVSAVASAAVGGDDH 751

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG------TDFFDNL 731
            ++   +  H+  +A+                    S          G           + 
Sbjct: 752  DEQPSRFLHELGVADPPPGGGGGPDGDARPGEGAGSDGDAGPGEDAGSDDARTGALPLSR 811

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYK---------------------------------RPK 758
              R         +L      P                                      +
Sbjct: 812  PPRALTLASLVAELRTAVTDPSAPVLRRRAAAAELARLAAEGVAGAHPDDWWGLRPLSDE 871

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                 + +P   + S ++  +         R                   G L H     
Sbjct: 872  RPLVADGEPVRVTPSGMESALRCSLRWLLERHGGGAPASA------AQGVGNLVHAA--- 922

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
                     + +   L+  +       E     +    +     +    L         +
Sbjct: 923  --AMLAENASSDRRALLDYVAARFDAIELAARWMVGPEQARAEAMVDKLLRWLATNPRRL 980

Query: 879  EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
              I      ++      + L G  DR+++   G + + D KTG +     A     PQL 
Sbjct: 981  LAIEHEFAVRLDDSRHPVDLVGRVDRLEVDSDGRLVVVDLKTGKSTAVTAADLTEHPQLG 1040

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
               AA++AG+F++    +      ++L    K        +  + +  +      L+   
Sbjct: 1041 AYQAAVEAGAFAEFG-TESGGASLVQLGTGAK--EAREQAQPPAGEGPAAGWATALVRRT 1097

Query: 999  TLLQNGEQ 1006
                    
Sbjct: 1098 AETMAATT 1105


>gi|293554029|ref|ZP_06674629.1| exonuclease RexB [Enterococcus faecium E1039]
 gi|291601811|gb|EFF32063.1| exonuclease RexB [Enterococcus faecium E1039]
          Length = 1175

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 112/929 (12%), Positives = 247/929 (26%), Gaps = 137/929 (14%)

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                + L ++   + T   + EDL  L  +        L    LK+    +   L +   
Sbjct: 122  RGFTRQLQELYSELRTGNIQPEDLMLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTQRAL 181

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
            ++        +   A ++       +  I++G +       +L+  +       + L  L
Sbjct: 182  TNE-----DALSILANYMQIQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-L 235

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            D      +   +T            + +  +  +  L+D      E  +           
Sbjct: 236  DRPYTADLPEVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP---------- 283

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                   + L    +    T   +    +       + L EA+N  EE   +A+ +R  +
Sbjct: 284  -------TELQLLQTMWEETSSQKKAAVHKLGGQEHLRLWEAENPTEEVRQLAVEIRRLV 336

Query: 383  ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
               +   +   ++T + +L   +         I   I     +        + SL     
Sbjct: 337  SEENYRYRDIQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDR 396

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSL 491
                   I    K  L      E  L   K   +    +           +Y        
Sbjct: 397  YSYRLSDIMRFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTRE 456

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI- 550
               +                L E+   +  L    +   +  +   KT + +        
Sbjct: 457  KDWQFVAYDFEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKKSKTGQEAANVFYQFL 516

Query: 551  --SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
              S   +  +          + +      E+    L  L  + +        +   + +I
Sbjct: 517  IQSGVQQQLLFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEI 575

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            IT  ++  +          + I      R          GLN+ V+P        LS   
Sbjct: 576  ITSGLENLSYGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEE 635

Query: 669  QSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWL 716
            +  LN    +                        +GT  L  + +   + +     S +L
Sbjct: 636  REVLNQALPDGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYL 695

Query: 717  QRLLVLG------------------------------------GTDFFDNLKKRGQ---- 736
            +R+                                          D    + K  Q    
Sbjct: 696  RRITEYLSVPVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKE 755

Query: 737  -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYAR 788
                  + ++  ++  + +  +     P    E         S S ++   N  Y  + +
Sbjct: 756  LVLNSSWRNFALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQ 815

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDS 841
              LKL               G  +H  +    K         +N +  +     ++++  
Sbjct: 816  FGLKLKER--TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDAQRRDFTEKVLQE 873

Query: 842  HFEK---ENLPPHIDIIW-RHLFHKISH--SFLEHEEKIQSSIEKIFVNIPAK------- 888
             F +   E L     + + R+   +     ++   ++   + +  +   I          
Sbjct: 874  VFGELRFEILDSSARMNYIRYQLGQTIQKVAWALQKQSKNTGMHPLQTEILFGQIAGAKG 933

Query: 889  ---MAIE---SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLS 938
               + +       +H+ G  DRID+        + + DYK +G +     A   +  QL 
Sbjct: 934  ITGLELPLSNGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLL 993

Query: 939  LEA--AALKAGSFSQIDCRKVANLFYIRL 965
                 A + A   +     K A  +Y+ +
Sbjct: 994  TYLDVALMDAVRLTGKAAVKPAGSYYLHV 1022


>gi|255973165|ref|ZP_05423751.1| exonuclease RexB [Enterococcus faecalis T1]
 gi|255964183|gb|EET96659.1| exonuclease RexB [Enterococcus faecalis T1]
          Length = 1186

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 81   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 140

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 141  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 195

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 196  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 253

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 254  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 298

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 299  PPLSAADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 358

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 359  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 418

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 419  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 478

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 479  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 538

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 539  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 597

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 598  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 657

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +   +        L  T  S+++       S + + +        F+  +    
Sbjct: 658  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 717

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 718  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 777

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 778  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 835

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 836  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 895

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 896  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 953

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 954  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1013

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1014 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1042


>gi|257086467|ref|ZP_05580828.1| exonuclease RexB [Enterococcus faecalis D6]
 gi|256994497|gb|EEU81799.1| exonuclease RexB [Enterococcus faecalis D6]
 gi|315028069|gb|EFT40001.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX2137]
          Length = 1196

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQMENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTTDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q      +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEVLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|225026994|ref|ZP_03716186.1| hypothetical protein EUBHAL_01250 [Eubacterium hallii DSM 3353]
 gi|224955679|gb|EEG36888.1| hypothetical protein EUBHAL_01250 [Eubacterium hallii DSM 3353]
          Length = 1134

 Score =  160 bits (405), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 119/974 (12%), Positives = 251/974 (25%), Gaps = 149/974 (15%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA---DFLKIASKYWTERLVELN 203
                 L  ++         WE +      +        +     L    +++ + +    
Sbjct: 117  GFIDELKSMLMEFIGYGVTWEQVEE--VSEKLGENKALSNKCKELGRIYEHFDKAIE--G 172

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                    + + R  A+     T       G  G  P     +  +        V   + 
Sbjct: 173  RFMVTEQILDVAREFAKEAPMLTNAVFYFDGFAGFTPVQLAFLKELLKVAGQINVTITIP 232

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
              +P      + E     +             L  L      + E+V +L    +  +  
Sbjct: 233  EFVPGQ--RGMPEDLFTSSKKTGDA-------LLMLCQENMQEVEEVVKLDTPVSPRFIN 283

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
            +  ++        +  +             K    + +    N   EA  +   +   + 
Sbjct: 284  NPELAFLEKNLFQNSRKI----------YSKKIERIHMTVCHNPDGEADYVMHKIEQLVR 333

Query: 384  ENK---KKSALITADRNLAR----RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
            +     +  A+++ D         R    L    I +       +S       + SL + 
Sbjct: 334  QKGYRYRDFAVLSGDVADYASAFKRKAAIL---NIPVFEDTKKKVSYHSGVEAVRSLFHL 390

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                  + ++   +K  ++     +            V             LK+      
Sbjct: 391  AQMEYSYESVFRYLKSGMSNLIDEDADYLENYVLYAGVRGYSMWKKPFYRRLKN------ 444

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                 +         L E+  E        +      +         T   LS  +    
Sbjct: 445  ----KDEAAIKALLLLQEKFMEETENFCSVMRDKEASVRDKIEVLYHTMVKLSFEEKL-- 498

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                      +    +    + +    L SL  KI+      K    E  +I+   +D  
Sbjct: 499  --KNQAQKAEENSDFVKAAEYRQLYDLLLSLMDKIVMIFGEEKMAVKELAEIVDAGLDAL 556

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---N 673
             +         + +     +RL     L + G+N+G  P N      LS   +  L    
Sbjct: 557  GLGVVPLTMDQVVLGDLKRTRLHEVKVLFITGMNDGKIPPNIEDRGLLSDEEKEVLKNCG 616

Query: 674  LKTAEKYIGQA---AHDFEMANGTR--HLIYTRS-LRENNIPTIAS-------------- 713
            +  ++  + Q+        MA       L ++ S    +      S              
Sbjct: 617  ISLSQSLLEQSMEDEFYMYMAFAKPTDELYFSYSVTDSDGSALRPSLLQKNISQLFPKLK 676

Query: 714  -------------------RWLQRLLVLGGTDFFDNLKKRGQCYLD--WTRKLD------ 746
                                +L    +   T+     K R    L   W  + +      
Sbjct: 677  RKQYPEEERRYYFNLEDSREFLIESFLQAKTEPEKVRKNRAFVMLAKYWLEQSEGRKELE 736

Query: 747  ------YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                      Q      +    L  +  + S + +++    PY  +    L+L      +
Sbjct: 737  KYGHWIENAYQEPELSEELLEQLYGKELSGSVTRLERFAACPYQYFCIYGLELRERE--E 794

Query: 801  KDPDRTDRGTLFHNIITEL----------IKKRINKNTPE-INHLMKQIIDSHFEKENLP 849
                  D G LFH  +              K   ++   + I+  +   +D +       
Sbjct: 795  YKIRPIDLGNLFHKALECFSRKVKESEYSWKNIPDEVQEQYISEALHTAMDENLSDVFQS 854

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPA---------KMAIESIG-IH 897
               +        +I    ++        S  E     +           ++ +E    + 
Sbjct: 855  SSRNQYKIKTVERIMKRTIQVLRVHLKNSQFEPDRFELSFGKNKKLKEAEVPLEDGRKMF 914

Query: 898  LTGFADRID--LLKSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKA-----GS 948
            L G  DR+D        +  + DYK+G    + E     ++ QL +   A +        
Sbjct: 915  LQGVIDRVDTCEDDDEILMKVIDYKSGMKKFELEDFYYGLEMQLVIYMNAAEEIYKENEQ 974

Query: 949  FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL----IEIVTLLQNG 1004
                     A +FY +L      D I        ++ L    L  +     +I++ L+ G
Sbjct: 975  NPDNKPVVPAGIFYYQL-----QDPIIKADYAEESELLKNFRLSGMANSDADILSKLEEG 1029

Query: 1005 EQPFISHLRLSEKS 1018
               F+S     +KS
Sbjct: 1030 SDGFVSMPIRLKKS 1043


>gi|328951962|ref|YP_004369296.1| ATP-dependent nuclease subunit B [Desulfobacca acetoxidans DSM 11109]
 gi|328452286|gb|AEB08115.1| ATP-dependent nuclease subunit B [Desulfobacca acetoxidans DSM 11109]
          Length = 895

 Score =  160 bits (405), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 100/697 (14%), Positives = 198/697 (28%), Gaps = 68/697 (9%)

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI-------- 413
            I   + R+E   +A  +    D+ +     +            EL R    +        
Sbjct: 225  ITLPDRRQEMDWVAAKVLELADQEQIPLHRLAVTAPNLTEYLPELRRIWRELLGPGMTPE 284

Query: 414  ----DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
                + S G  L+ T         L           +A  +  P     + E    +A  
Sbjct: 285  GCWCNFSLGDCLAETQIFHAALLPLRFRTYGELREDLAAWLLSPY----YQEFSPQQAAI 340

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                +  R ++ +YD   L+    +   T      +      +S    + A   +     
Sbjct: 341  LQWDLIWRRSRIAYDWPALRRAASEADRTGLEPALLSRLDRIISCLPLDPAPAGI----- 395

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                                   WTK      +                +  + L    +
Sbjct: 396  -----------------------WTKRLQAVWEQSGFPGRLSPLEERSYQHLQELLRDLT 432

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
             +       + +    I+ +        +  +  + + + ILG LE R L+FD +   GL
Sbjct: 433  AL---EGSSELSGSTLIEWLNLGARQIDLPGEGTQEAGVQILGLLELRGLDFDAVFCMGL 489

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNI 708
            N GV+P      P L+   +  +   T +     A   +         LI TR L +   
Sbjct: 490  NMGVFPPPPRPLPLLTASERVLVLGGTYQGQQQFAEQAYRNLQAVAPRLICTRPLVQQEE 549

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                S  + +                                       +        P 
Sbjct: 550  EQTPSFLIDQTWRQETCSPLSRPHPAWLRSPAVRVVFQAPASGGAILNKELT--SVKLPS 607

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI---N 825
              S S +   +  P   Y   +L L  +P         +RG+  H ++    ++      
Sbjct: 608  EISLSALMTALACPCQFYFSVLLGLQELPEIDSGLPPPERGSALHQVLERFTRRFSQAIQ 667

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK-------ISHSFLEHEEKI-QSS 877
            ++           +    E+       D  W+    +       +   +L+ E +  ++ 
Sbjct: 668  ESDHWNEAAALNCLQIVMEEFQSWAKADPHWQAELERWLAPEGGVLREWLQQERQHYENG 727

Query: 878  IEKIFVNIPA-KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID-P 935
               + +  P   + +      + G  DRID  K   + + DYK+G+ PK+   ++     
Sbjct: 728  WRWLVMEAPFAGLRLPDWPGSIRGRIDRIDWHKEQGLMLWDYKSGNVPKQRDLEEDRSQF 787

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK--KKYSADELSEKSLKN 993
            QL     A++ G    +  ++ A    I LK   +      D          L    L  
Sbjct: 788  QLPGYLLAVQHGLIPTLPRQQ-ARAGIIGLKSSRQDHLRFEDYGLSAGDWRRLLSLKLAA 846

Query: 994  LIEIVTLLQNGE-QPFISHLRLSE-KSNIQSEYDHLA 1028
            + ++   +Q G+ +P  S     +  S     +  L 
Sbjct: 847  VAKVGKKVQQGDFRPDPSLPPPGKGNSCTYCPFHLLC 883


>gi|282908261|ref|ZP_06316092.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            WW2703/97]
 gi|282327926|gb|EFB58208.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            WW2703/97]
          Length = 865

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 91/744 (12%), Positives = 217/744 (29%), Gaps = 109/744 (14%)

Query: 357  SDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINI 413
              + ++E+   REE   IA  + + + +     +  A++  D + A      L  + I  
Sbjct: 5    GHINILESATMREEINEIARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPY 64

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            +I     ++      ++ SL+  I        +  L+K  +    +     +   + LE 
Sbjct: 65   NIDTKRSMTHHPVMEMIRSLIEVIQSNWQINPMLRLLKTDVLTTSY--LKSAYLVDLLEN 122

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC-- 530
              L         +D +   ++  +      H      R + E   +L   ++D IL    
Sbjct: 123  FVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEK 182

Query: 531  -ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             ++   T K    +   ++   +     +T    + L+          ++    L  +  
Sbjct: 183  QMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILD 241

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
             ++        +   ++++    ++        +    + I     +++ N   + L G+
Sbjct: 242  DLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGM 301

Query: 650  NEGVWPKNTAKNPFLSRVMQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYT 700
            N+G  P+    +  ++   +         +L+  +    + +A   +      + ++ ++
Sbjct: 302  NDGTMPQPVTASSLITDEEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFS 361

Query: 701  RSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRG-------------------QCYLD 740
             SL   +      S +L ++  L       N+ +                     +    
Sbjct: 362  YSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRA 421

Query: 741  WTRKLDYTTKQPHYKRPKPFPPL-----------------------------EAQPRTYS 771
            W              +                                      +    S
Sbjct: 422  WLDDEIVADSWLDAYQVIRDSDHLSQGLDYLMSALTFDNETVKLGETLSKDLYGKEINAS 481

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S  +     P+  YA   LKL+     K +    D G +FH+++  + ++         
Sbjct: 482  VSRFEGYQQCPFKHYASHGLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLD 539

Query: 832  NHLMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKI 881
               ++Q+ +   E+                         I  + L   +     S     
Sbjct: 540  LKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPK 599

Query: 882  FVNIPAK--------------MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GD 922
                  +                 + I I++ G  DRID   K+    V+I DYK+  G 
Sbjct: 600  HFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGS 659

Query: 923  NP-KKETAQKLIDPQLSLEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITN 976
                       +  Q+      +    +    + I   K   L Y  + + + K     +
Sbjct: 660  ATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWAD 717

Query: 977  DKKKYSADELSEKSLKNLIEIVTL 1000
              +     +L +K    L  +V  
Sbjct: 718  IDEDKLEQDLIKKFK--LSGLVNA 739


>gi|139474038|ref|YP_001128754.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes str.
            Manfredo]
 gi|251764622|sp|A2RFA9|ADDB_STRPG RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|134272285|emb|CAM30538.1| putative ATP-dependent exonuclease subunit B [Streptococcus pyogenes
            str. Manfredo]
          Length = 1071

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 135/986 (13%), Positives = 276/986 (27%), Gaps = 140/986 (14%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P        S        + L ++   ++  +
Sbjct: 75   SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                DL  L             D +KI     T  + +           A          
Sbjct: 130  LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            + +K  ++I G +        L+S + N+    I+   +        +         I  
Sbjct: 184  QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +    S H    LA+                ++       + V   +F           D
Sbjct: 235  NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              +      +      +L +  +++EE   +A ++R  L E  +   ++    ++     
Sbjct: 281  FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340

Query: 404  LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                   +F I   +    P++       + SL  +         I  ++K  L      
Sbjct: 341  QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                      D+                       ++   +   
Sbjct: 401  -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577
              L +     + PL     ++       S+ D   L    +   +N+      +L     
Sbjct: 436  DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE  K  + + +         K    + + +I   +     +        + I      +
Sbjct: 494  EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686
              +   +   GL +  +PK    +  LS   ++ +N     ++   A           A 
Sbjct: 554  PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725
                A  T+ L+ +     N      S +L+ L+  G                       
Sbjct: 614  SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKA 672

Query: 726  -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760
                       D  +   +    +    R L    ++   + P                 
Sbjct: 673  LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732

Query: 761  -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                +  P   S + +    N+ Y  + + +L L+        PD    G   H +   L
Sbjct: 733  VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790

Query: 820  IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +K    +               +S F++             +   I  S     +  Q+ 
Sbjct: 791  MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRSTAPTLQLNQN- 849

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936
            I+ I       + +    I + G  DRID L  G + + DYK+  N     T    + PQ
Sbjct: 850  IKVIDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGVVDYKSSANQFDIGTFYNGLSPQ 908

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L    AALK  +   I+  ++    Y+ L Q  K+D +T  +   +  E   K+L     
Sbjct: 909  LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQS 1022
               +    E+  +S      K+ + S
Sbjct: 962  YKGIFSEVEKEHLSTGAYQTKNALYS 987


>gi|261207736|ref|ZP_05922421.1| exonuclease RexB [Enterococcus faecium TC 6]
 gi|289565811|ref|ZP_06446253.1| exonuclease RexB [Enterococcus faecium D344SRF]
 gi|294614015|ref|ZP_06693945.1| exonuclease RexB [Enterococcus faecium E1636]
 gi|260078119|gb|EEW65825.1| exonuclease RexB [Enterococcus faecium TC 6]
 gi|289162354|gb|EFD10212.1| exonuclease RexB [Enterococcus faecium D344SRF]
 gi|291593122|gb|EFF24701.1| exonuclease RexB [Enterococcus faecium E1636]
          Length = 1175

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 113/929 (12%), Positives = 248/929 (26%), Gaps = 137/929 (14%)

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                + L ++   + T   + EDL  L  +        L    LK+    +   L +   
Sbjct: 122  RGFIRQLQELYSELRTGNIQPEDLMLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTQRAL 181

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
            ++        +   A ++       +  I++G +       +L+  +       + L  L
Sbjct: 182  TNE-----DALSILANYMQTQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-L 235

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            D      +   +T            + +  +  +  L+D      E  +           
Sbjct: 236  DRPYTADLPEVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP---------- 283

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                   + L    +    T   +    +       + L EA+N  EE   +A+ +R  +
Sbjct: 284  -------TELQLLQTMWEETSSQKKAAVHKLGGQEHLHLWEAENPTEEVRQLAVEIRRLV 336

Query: 383  ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
               +   +   ++T + +L   +         I   I     +        + SL     
Sbjct: 337  SEENYRYRDIQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDR 396

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSL 491
                   I    K  L      E  L   K   +    +           +Y        
Sbjct: 397  YSYRLSDIMRFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTRE 456

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI- 550
               +                L E+   +  L    +   +  +   KT + +  G     
Sbjct: 457  KDWQFVAYDFEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKKSKTGQEAANGFYQFL 516

Query: 551  --SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
              S   +  +          + +      E+    L  L  + +        +   + +I
Sbjct: 517  IQSGVQQQLLFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEI 575

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            IT  ++  +          + I      R          GLN+ V+P        LS   
Sbjct: 576  ITSGLENLSYGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEE 635

Query: 669  QSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWL 716
            +  LN    +                        +GT  L  + +   + +     S +L
Sbjct: 636  REVLNQALPDGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYL 695

Query: 717  QRLLVLG------------------------------------GTDFFDNLKKRGQ---- 736
            +R+                                          D    + K  Q    
Sbjct: 696  RRITEYLSVPVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKE 755

Query: 737  -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYAR 788
                  + ++  ++  + +  +     P    E         S S ++   N  Y  + +
Sbjct: 756  LVLNSSWRNFALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQ 815

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDS 841
              LKL               G  +H  +    K         +N +  +     ++++  
Sbjct: 816  FGLKLKER--TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDAQRRDFTEKVLQE 873

Query: 842  HFEK---ENLPPHIDIIW-RHLFHKISH--SFLEHEEKIQSSIEKIFVNIPAK------- 888
             F +   E L     + + R+   +     ++   ++   + +  +   I          
Sbjct: 874  VFGELRFEILDSSARMNYIRYQLGQTIQKVAWALQKQSKNTGMHPLQTEILFGQIAGAKG 933

Query: 889  ---MAIE---SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLS 938
               + +       +H+ G  DRID+        + + DYK +G +     A   +  QL 
Sbjct: 934  ITGLELPLSNGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLL 993

Query: 939  LEA--AALKAGSFSQIDCRKVANLFYIRL 965
                 A + A   +     K A  +Y+ +
Sbjct: 994  TYLDVALMDAVRLTGKAVVKPAGSYYLHV 1022


>gi|94990158|ref|YP_598258.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10270]
 gi|251764620|sp|Q1JHM2|ADDB_STRPD RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|94543666|gb|ABF33714.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10270]
          Length = 1071

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 135/986 (13%), Positives = 278/986 (28%), Gaps = 140/986 (14%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P        S        + L ++   ++  +
Sbjct: 75   SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                DL  L             D +KI     T  + +           A          
Sbjct: 130  LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            + +K  I+I G +        L+S + N+    I+      ++    +     K     +
Sbjct: 184  QLSKTVIVIDGFSRFSAEEDYLLSLLNNNCQEVII----GSYVSQKAYQKSFIKGNIYEA 239

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            S        Q    K +  +  +         V    + R   + ++       D +   
Sbjct: 240  SLHFLQDLAQKYHIKPVFAISNQ---------VFKPAFSRLTQLFEATHDFSQVDWQLQK 290

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
                            +L +  +++EE   +A ++R  L E  +   ++    ++     
Sbjct: 291  ND----------LDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340

Query: 404  LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                   +F I   +    P++       + SL  +         I  ++K  L      
Sbjct: 341  QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                      D+                       ++   +   
Sbjct: 401  -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577
              L +     + PL     ++       S+ D   L    +   +N+      +L     
Sbjct: 436  DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE  K  + + +         K    + + +I   +     +        + I      +
Sbjct: 494  EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686
              +   +   GL +  +PK    +  LS   ++ +N     ++   A           A 
Sbjct: 554  PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725
                A  T+ L+ +     N      S +L+ L+  G                       
Sbjct: 614  SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKA 672

Query: 726  -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760
                       D  +   +    +    R L    ++   + P                 
Sbjct: 673  LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732

Query: 761  -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                +  P   S + +    N+ Y  + + +L L+        PD    G   H +   L
Sbjct: 733  VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790

Query: 820  IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +K    +               +S F++             +   I  S      ++  +
Sbjct: 791  MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAMLEDIVRST-APILQLNQN 849

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936
            I+ I      ++ +    I + G  DRID L  G + I DYK+  N     T    + PQ
Sbjct: 850  IQVIDQEKNFQLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L    AALK  +   I+  ++    Y+ L Q  K+D +T  +   +  E   K+L     
Sbjct: 909  LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQS 1022
               +    E+  +S      K+ + S
Sbjct: 962  YKGIFSEVEKEHLSTGAYQTKNALYS 987


>gi|56808114|ref|ZP_00365903.1| COG3857: ATP-dependent nuclease, subunit B [Streptococcus pyogenes
            M49 591]
          Length = 1071

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 132/986 (13%), Positives = 270/986 (27%), Gaps = 140/986 (14%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P        S        + L ++   ++  +
Sbjct: 75   SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                DL  L             D +KI     T  + +           A          
Sbjct: 130  LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            + +K  ++I G +        L+S + N+    I+   +        +         I  
Sbjct: 184  QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +    S H    LA+                ++       + V   +F           D
Sbjct: 235  NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              +      +      +L +  +++EE   +A ++R  L E  +   ++    ++     
Sbjct: 281  FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340

Query: 404  LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                   +F I   +    P++       + SL  +         I  ++K  L      
Sbjct: 341  QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                      D+                       ++   +   
Sbjct: 401  -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577
              L +     + PL     ++       S+ D   L    +   +N+      +L     
Sbjct: 436  DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE  K  + +           K    + + +I   +     +        + I      +
Sbjct: 494  EEVWKRFTDILISFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686
              +   +   GL +  +PK    +  LS   ++ +N     ++   A           A 
Sbjct: 554  PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF------FDNLKKRGQCYLD 740
                A  T+ L+ +     N      S +L+ L+  G                    Y  
Sbjct: 614  SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIANYKA 672

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRT------------------------------- 769
               ++    +Q   +                                             
Sbjct: 673  LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732

Query: 770  ----------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                       S + +    N+ Y  + + +L L+        PD    G   H +   L
Sbjct: 733  VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790

Query: 820  IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +K    +               +S F++             +   I  S      ++  +
Sbjct: 791  MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936
            I+ I      ++ +    I + G  DRID L  G + I DYK+  N     T    + PQ
Sbjct: 850  IQVIDQEKNFQLDM-GNEILIHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L    AALK  +   I+  ++    Y+ L Q  K+D +T  +   +  E   K+L     
Sbjct: 909  LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQS 1022
               +    E+  +S      K+ + S
Sbjct: 962  YKGIFSEVEKEHLSTGAYQTKNALYS 987


>gi|229546209|ref|ZP_04434934.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis
            TX1322]
 gi|256852762|ref|ZP_05558132.1| exonuclease RexB [Enterococcus faecalis T8]
 gi|307291095|ref|ZP_07570980.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0411]
 gi|229308733|gb|EEN74720.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis
            TX1322]
 gi|256711221|gb|EEU26259.1| exonuclease RexB [Enterococcus faecalis T8]
 gi|306497749|gb|EFM67281.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0411]
          Length = 1196

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELKIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q      +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIGEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|256762120|ref|ZP_05502700.1| exonuclease RexB [Enterococcus faecalis T3]
 gi|256683371|gb|EEU23066.1| exonuclease RexB [Enterococcus faecalis T3]
          Length = 1186

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 257/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 81   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 140

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 141  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 195

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 196  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 253

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 254  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPALQELNDYWIQSQEHL 298

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 299  PPLSTTDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 358

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 359  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYSDVLRFLRTELFMPMNQLA 418

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 419  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVTT 478

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 479  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 538

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 539  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 597

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 598  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 657

Query: 680  YIGQAAH--DFEMANGTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +      ++    L  T  S+++       S + + +        F+  +    
Sbjct: 658  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 717

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 718  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 777

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 778  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 835

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 836  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 895

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 896  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 953

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 954  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1013

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1014 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1042


>gi|257881060|ref|ZP_05660713.1| exonuclease RexB [Enterococcus faecium 1,231,502]
 gi|257889645|ref|ZP_05669298.1| exonuclease RexB [Enterococcus faecium 1,231,410]
 gi|257892415|ref|ZP_05672068.1| exonuclease RexB [Enterococcus faecium 1,231,408]
 gi|260559203|ref|ZP_05831389.1| exonuclease RexB [Enterococcus faecium C68]
 gi|293563137|ref|ZP_06677602.1| exonuclease RexB [Enterococcus faecium E1162]
 gi|294623301|ref|ZP_06702163.1| exonuclease RexB [Enterococcus faecium U0317]
 gi|314939882|ref|ZP_07847088.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium
            TX0133a04]
 gi|314943729|ref|ZP_07850468.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium
            TX0133C]
 gi|314949685|ref|ZP_07853003.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium
            TX0082]
 gi|314953231|ref|ZP_07856170.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium
            TX0133A]
 gi|314993689|ref|ZP_07859037.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium
            TX0133B]
 gi|314997394|ref|ZP_07862345.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium
            TX0133a01]
 gi|257816718|gb|EEV44046.1| exonuclease RexB [Enterococcus faecium 1,231,502]
 gi|257826005|gb|EEV52631.1| exonuclease RexB [Enterococcus faecium 1,231,410]
 gi|257828794|gb|EEV55401.1| exonuclease RexB [Enterococcus faecium 1,231,408]
 gi|260074960|gb|EEW63276.1| exonuclease RexB [Enterococcus faecium C68]
 gi|291597269|gb|EFF28458.1| exonuclease RexB [Enterococcus faecium U0317]
 gi|291604915|gb|EFF34384.1| exonuclease RexB [Enterococcus faecium E1162]
 gi|313588529|gb|EFR67374.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium
            TX0133a01]
 gi|313591863|gb|EFR70708.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium
            TX0133B]
 gi|313594697|gb|EFR73542.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium
            TX0133A]
 gi|313597592|gb|EFR76437.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium
            TX0133C]
 gi|313640845|gb|EFS05425.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium
            TX0133a04]
 gi|313643943|gb|EFS08523.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium
            TX0082]
          Length = 1175

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 112/929 (12%), Positives = 246/929 (26%), Gaps = 137/929 (14%)

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                + L ++   + T   + EDL  L  +        L    LK+    +   L +   
Sbjct: 122  RGFIRQLQELYSELRTGNIQPEDLMLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTQRAL 181

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
            ++        +   A ++       +  I++G +       +L+  +       + L  L
Sbjct: 182  TNE-----DALSILANYMQTQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-L 235

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            D      +   +T            + +  +  +  L+D      E  +           
Sbjct: 236  DRPYTADLPEVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP---------- 283

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                   + L    +    T   +    +       + L EA+N  EE   +A+ +R  +
Sbjct: 284  -------TELQLLQTMWEETSSQKKAAVHKIGGQEHLHLWEAENPTEEVRQLAVEIRRLV 336

Query: 383  ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
               +   +   ++T + +L   +         I   I     +        + SL     
Sbjct: 337  SEENYRYRDIQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDR 396

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSL 491
                   I    K  L      E  L   K   +    +           +Y        
Sbjct: 397  YSYRLSDIMRFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTRE 456

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI- 550
               +                L E+   +  L    +   +  +   KT + +        
Sbjct: 457  KDWQFVAYDFEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKKSKTGQEAANVFYQFL 516

Query: 551  --SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
              S   +  +          + +      E+    L  L  + +        +   + +I
Sbjct: 517  IQSGVQQQLLFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEI 575

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            IT  ++  +          + I      R          GLN+ V+P        LS   
Sbjct: 576  ITSGLENLSYGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEE 635

Query: 669  QSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWL 716
            +  LN    +                        +GT  L  + +   + +     S +L
Sbjct: 636  REVLNQALPDGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYL 695

Query: 717  QRLLVLG------------------------------------GTDFFDNLKKRGQ---- 736
            +R+                                          D    + K  Q    
Sbjct: 696  RRITEYLSVPVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKE 755

Query: 737  -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYAR 788
                  + ++  ++  + +  +     P    E         S S ++   N  Y  + +
Sbjct: 756  LVLNSSWRNFALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQ 815

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDS 841
              LKL               G  +H  +    K         +N +  +     ++++  
Sbjct: 816  FGLKLKER--TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDAQRRDFTEKVLQE 873

Query: 842  HFEK---ENLPPHIDIIW-RHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK------- 888
             F +   E L     + + R+   +      +   ++   + +  +   I          
Sbjct: 874  VFGELRFEILDSSARMNYIRYQLGQTIQKVTWALQKQSKNTGMHPLQTEILFGQIAGAKG 933

Query: 889  ---MAIE---SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLS 938
               + +       +H+ G  DRID+        + + DYK +G +     A   +  QL 
Sbjct: 934  ITGLELPLSNGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLL 993

Query: 939  LEA--AALKAGSFSQIDCRKVANLFYIRL 965
                 A + A   +     K A  +Y+ +
Sbjct: 994  TYLDVALMDAVRLTGKAAVKPAGSYYLHV 1022


>gi|315150317|gb|EFT94333.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0012]
          Length = 1196

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q      +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|157150420|ref|YP_001450694.1| putative exonuclease RexB [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|251764616|sp|A8AY34|ADDB_STRGC RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|157075214|gb|ABV09897.1| putative exonuclease RexB [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 1093

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 112/923 (12%), Positives = 252/923 (27%), Gaps = 137/923 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L          L + +  S
Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVATALNKGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       + +   +     ++I G T        L+  +     G  ++ G   +
Sbjct: 166 SSQIATFAQHILSGDTDEELADLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +           +S           L KL +   +K + +               
Sbjct: 222 ASQKAYRAAFRDGNLYQASVDF--------LRKLAEDYQVKPDYIPY------------A 261

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
               +F           D  E  +   +   S + +    N++EE   +A ++R  + + 
Sbjct: 262 EAEDAFGRISKVLESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 VRYKDIRLLFGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K                        + G+    ++   +  +          
Sbjct: 382 LEDLLNLLKTG----------------------IYGDLTQEELDHFEQYLRFADIKGAVK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561
                  +   + D +    +   ++  +      ++   +      +           L
Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMAPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +   E         EE  K  S +  +  +  +  K    +++ ++   +     +  
Sbjct: 480 TALLQ-EESHQEQERHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN  T  +  
Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598

Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721
            Q A         +         T+ L+ +     N +    S +L  L           
Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658

Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758
                                 L   +         Q +     R L           P+
Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718

Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               + QP   S S + +   + Y  + + IL L     +   P
Sbjct: 719 ISKELKTESLQPETLHALYPKDQPLRLSASALSEYFKNQYGYFIKYILGLQ--EEWTIHP 776

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINH-LMKQIIDS-HFEKENLPPHIDIIWRHLFH 861
           D    G   H I  +++++  +++  +     + + +    FE         +  R L  
Sbjct: 777 DARSHGNFLHRIFEKVLQEDTSRDFDQRLEVAIDETMRETEFESLYNESSESLFTRQLLL 836

Query: 862 KISHSFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDL-LKSGFV 913
             + S  +   +  + IE I           P  +  +   + + G  DRID  L  G +
Sbjct: 837 DTAKSTGQVLAQS-AGIETIGEETVFGNSKEPFLILEDGRAVSVRGKVDRIDRLLADGSL 895

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+ +     E     ++ QL    AA++     Q + R +    Y+++ +     
Sbjct: 896 GVVDYKSSETKFSYEKFFNGLNSQLPTYLAAIQELQGQQ-EGRDLFGAMYLQMTE----- 949

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
            I   K      +  ++  K + 
Sbjct: 950 PIVALKDTKELGDAVKEVAKTMQ 972


>gi|94992154|ref|YP_600253.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS2096]
 gi|251764618|sp|Q1JCJ9|ADDB_STRPB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|94545662|gb|ABF35709.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS2096]
          Length = 1071

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 136/983 (13%), Positives = 277/983 (28%), Gaps = 134/983 (13%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P        S        + L ++   ++  +
Sbjct: 75   SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                DL  L             D +KI     T  + +           A          
Sbjct: 130  LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            + +K  I+I G +        L+S + N+    I+   +        +         I  
Sbjct: 184  QLSKTVIVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +    S H    LA+                ++       + V   +F           D
Sbjct: 235  NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              +      +      +L +  +++EE   +A ++R  L E  +   ++    ++     
Sbjct: 281  FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340

Query: 404  LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                   +F I   +    P++       + SL  +         I  ++K  L      
Sbjct: 341  QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                   DI                    P   +   +   +  
Sbjct: 401  SDIDR----------FEEYTQFADIKGFTKFS------------KPFTINSSRQYPLDFL 438

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
              +   I+  +  L   +    ++  +  I    K  +   +N+      +L     EE 
Sbjct: 439  NEMRQDIVLPLQELFKSQKQLGASLIDKLILFLEK--IRLAENMQGLAQSQLEVEKNEEV 496

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
             K  + + +         K    + + +I   +     +        + I      +  +
Sbjct: 497  WKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQPHS 556

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AHDFE 689
               +   GL +  +PK    +  LS   ++ +N     ++   A           A    
Sbjct: 557  KPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTALSLF 616

Query: 690  MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT------------------------ 725
             A  T+ L+ +     N      S +L+ L+  G                          
Sbjct: 617  NA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKALLS 675

Query: 726  --------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF---------------PP 762
                    D  +   +    +    R L    ++   + P                    
Sbjct: 676  QIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCF 735

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
             +  P   S + +    N+ Y  + + +L L+        PD    G   H +   L+K 
Sbjct: 736  PKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERLMKD 793

Query: 823  RINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
               +               +S F++             +   I  S      ++  +I+ 
Sbjct: 794  HTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQNIKV 852

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSL 939
            I       + +    I + G  DRID L  G + I DYK+  N     T    + PQL  
Sbjct: 853  IDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQLVT 911

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
              AALK  +   I+  ++    Y+ L Q  K+D +T  +   +  E   K+L        
Sbjct: 912  YLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----TYKG 964

Query: 1000 LLQNGEQPFISHLRLSEKSNIQS 1022
            +    E+  +S      K+ + S
Sbjct: 965  IFSEVEKEHLSTGAYQTKNALYS 987


>gi|94988279|ref|YP_596380.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS9429]
 gi|251764619|sp|Q1JMH6|ADDB_STRPC RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|94541787|gb|ABF31836.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS9429]
          Length = 1071

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 136/983 (13%), Positives = 277/983 (28%), Gaps = 134/983 (13%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P        S        + L ++   ++  +
Sbjct: 75   SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                DL  L             D +KI     T  + +           A          
Sbjct: 130  LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            + +K  I+I G +        L+S + N+    I+   +        +         I  
Sbjct: 184  QLSKTVIVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +    S H    LA+                ++       + V   +F           D
Sbjct: 235  NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              +      +      +L +  +++EE   +A ++R  L E  +   ++    ++     
Sbjct: 281  FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340

Query: 404  LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                   +F I   +    P++       + SL  +         I  ++K  L      
Sbjct: 341  QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                   DI                    P   +   +   +  
Sbjct: 401  SDIDR----------FEEYTQFADIKGFTKFS------------KPFTINSSRQYPLDFL 438

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
              +   I+  +  L   +    ++  +  I    K  +   +N+      +L     EE 
Sbjct: 439  NEMRQDIVLPLQELFKSQKQLGASLIDKLILFLEK--IRLAENMQGLAQSQLEVEKNEEV 496

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
             K  + + +         K    + + +I   +     +        + I      +  +
Sbjct: 497  WKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQPHS 556

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AHDFE 689
               +   GL +  +PK    +  LS   ++ +N     ++   A           A    
Sbjct: 557  KPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTALSLF 616

Query: 690  MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT------------------------ 725
             A  T+ L+ +     N      S +L+ L+  G                          
Sbjct: 617  NA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKALLS 675

Query: 726  --------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF---------------PP 762
                    D  +   +    +    R L    ++   + P                    
Sbjct: 676  QIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCF 735

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
             +  P   S + +    N+ Y  + + +L L+        PD    G   H +   L+K 
Sbjct: 736  PKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERLMKD 793

Query: 823  RINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
               +               +S F++             +   I  S      ++  +I+ 
Sbjct: 794  HTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQNIKV 852

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSL 939
            I       + +    I + G  DRID L  G + I DYK+  N     T    + PQL  
Sbjct: 853  IDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQLVT 911

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
              AALK  +   I+  ++    Y+ L Q  K+D +T  +   +  E   K+L        
Sbjct: 912  YLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----TYKG 964

Query: 1000 LLQNGEQPFISHLRLSEKSNIQS 1022
            +    E+  +S      K+ + S
Sbjct: 965  IFSEVEKEHLSTGAYQTKNALYS 987


>gi|257418941|ref|ZP_05595935.1| exonuclease rexB [Enterococcus faecalis T11]
 gi|257160769|gb|EEU90729.1| exonuclease rexB [Enterococcus faecalis T11]
          Length = 1196

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q      +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|315030722|gb|EFT42654.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX4000]
          Length = 1196

 Score =  160 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELKIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q      +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPYWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIGEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|94994075|ref|YP_602173.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10750]
 gi|251764621|sp|Q1J7E5|ADDB_STRPF RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|94547583|gb|ABF37629.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10750]
          Length = 1071

 Score =  160 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 132/986 (13%), Positives = 271/986 (27%), Gaps = 140/986 (14%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P        S        + L ++   ++  +
Sbjct: 75   SPSKQHLDDTTLAMIFYRTLMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                DL  L             D +KI     T  + +           A          
Sbjct: 130  LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            + +K  ++I G +        L+S + N+    I+   +        +         I  
Sbjct: 184  QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +    S H    LA+                ++       + V   +F           D
Sbjct: 235  NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              +      +      +L +  +++EE   +A ++R  L E  +   ++    ++     
Sbjct: 281  FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340

Query: 404  LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                   +F I   +    P++       + SL  +         I  ++K  L      
Sbjct: 341  QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                      D+                       ++   +   
Sbjct: 401  -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577
              L +     + PL     ++       S+ D   L    +   +N+      +L     
Sbjct: 436  DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE  K  + + +         K    + + +I   +     +        + I      +
Sbjct: 494  EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686
              +   +   GL +  +PK    +  LS   ++ +N     ++   A           A 
Sbjct: 554  PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF------FDNLKKRGQCYLD 740
                A  T+ L+ +     N      S +L+ L+  G                    Y  
Sbjct: 614  SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIANYKA 672

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRT------------------------------- 769
               ++    +Q   +                                             
Sbjct: 673  LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732

Query: 770  ----------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                       S + +    N+ Y  + + +L L+        PD    G   H +   L
Sbjct: 733  VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790

Query: 820  IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +K    +               +S F++             +   I  S      ++  +
Sbjct: 791  MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936
            I+ I      ++ +    I + G  DRID L  G + I DYK+  N     T    + PQ
Sbjct: 850  IQVIDQEKNFQLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L    AALK  +   I+  ++    Y+ L Q  K+D +T  +   +  E   K+L     
Sbjct: 909  LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQS 1022
               +    E+  +S      K+ + S
Sbjct: 962  YKGIFSEVEKEHLSTGAYQTKNALYS 987


>gi|89901668|ref|YP_524139.1| hypothetical protein Rfer_2897 [Rhodoferax ferrireducens T118]
 gi|89346405|gb|ABD70608.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
          Length = 846

 Score =  160 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 112/815 (13%), Positives = 208/815 (25%), Gaps = 93/815 (11%)

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
             G  P    L + +         L         A W    +            +     +
Sbjct: 111  AGLAPYQNLLAARLMEAAWSLARLAASVAPTARAQWGLRLDSLLVSGLDAPVLALEAALA 170

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-----DILENKIP 350
               L           +      + +       S+         +           E+   
Sbjct: 171  RVALAWVASSSYPSDRLFAARPDLLVVLQGFQSEPLALALQHGLGERVVVLALQQEDTPT 230

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
                    VAL  A +  +EA   A  +   L   +   AL+  DR L RRV+  L   G
Sbjct: 231  GAAAGADTVALHAAQDAEDEAQRAAACVLAHLAAGRSPVALVAQDRVLTRRVRAMLEERG 290

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +    G  LSTT  ++ L SLL A         +   +K+  A           +   
Sbjct: 291  VAVRDETGWTLSTTRAAAALMSLLRASAWDASTDGVLDWLKNAPAFDPQLVTQAEASWRR 350

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
              +   R                                          AV L D + + 
Sbjct: 351  GAVREWR------------------------------------------AVPLGDALQRP 368

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +  L     +         ++ W       LQ+                         + 
Sbjct: 369  VQALRDSLQSG------RPLARWLVDLRAVLQSAGQWTGLMQDAAGQAVLQALRLHEGAH 422

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETV---KPKIEKSSTLFILGTLESRLLNFDTLILG 647
                   +  +  E+   +++ ++  +     P+      + IL   +        ++L 
Sbjct: 423  TEFADVAVSMSQSEFTAWVSQSLEAASFLPEHPENSAPGQVVILPLSQLLGRPLAAVVLP 482

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
            G ++   P +       +   +  L L    +    +   ++ A    H+       E  
Sbjct: 483  GCDDVRLPMSPEPTGPWTPAQRELLGLPARAQLAAASRAAWQYALQFPHVDVLWRQSEGG 542

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
               +AS ++Q L  LG         +  +        +                      
Sbjct: 543  EHLMASGFVQELQ-LGQIGAMAADPRPLRALTAKPGAMPSPRGDALAL------------ 589

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
               S +  + L   PY  +A R LKL        +  + D G   H ++    +      
Sbjct: 590  TRLSSTAYEDLRRCPYRFFALRQLKLQESDELDTELGKRDFGNWLHTVLKLFHEALNESP 649

Query: 828  TPE---INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFV 883
             P+      ++    +       L     + +   + ++   +LE     ++     +  
Sbjct: 650  APDFVGRLAMINAAAEQATLALGLSSSEFLPFAAAWPRVRAGYLEWLAGHEASGASFVAA 709

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA--QKLIDPQLSLEA 941
                + A+    + L G  DRID L+ G   + DYKT               D QL+  A
Sbjct: 710  ERWRETALGH--LTLVGKIDRIDRLQDGSALVIDYKTEPRASTAQRIKDAPEDTQLAFYA 767

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
            A L                 Y+ + +K               D L       L  I T +
Sbjct: 768  ALL---------GDDTLAAAYVNVGEKDGTKTYEQSDVVALRDLL-------LAGIATDM 811

Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREE 1036
                           K+        L R   W   
Sbjct: 812  ARIADGAAMAAMGEGKACEFCAARGLCRKDFWDVA 846


>gi|32473646|ref|NP_866640.1| hypothetical protein RB5340 [Rhodopirellula baltica SH 1]
 gi|32444182|emb|CAD74179.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 968

 Score =  160 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/634 (14%), Positives = 199/634 (31%), Gaps = 70/634 (11%)

Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENK-KKSALITADRNLARRVKLELTRFGINID 414
             D  LI A +  ++  ++   L     + +  +  +   D +    ++      G+   
Sbjct: 263 LQDDQLIPAGDVSDQTAAVMETLAEFGQKYRVDQITIGVTDESQVEPIENRCDLLGVATH 322

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
              G  +  T    ++  ++  + +   + ++A LV+H            +     +   
Sbjct: 323 RHLGHRVGQTAVGRLMHLIVTYLQRR-TWRSLAALVRH------------ADVTRYVSER 369

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                ++   + +L  L+        +             +  E A  +   + Q ++PL
Sbjct: 370 CPGHPESEKWLRELDQLLSSAFPRSVDEPLPAEV------QQTETADQIRTVLDQWLSPL 423

Query: 535 VTYKTNKNSTCGNLSI-SDWTKLTVTCLQNVCLDEHRKLPNLW----------FEEEGKT 583
           +     +     + ++ +   +L     Q +   +   +               ++  + 
Sbjct: 424 IKNTEPQPIRQWSETLQAILLELHGEAAQTLLPVDPDSMDESEETEPDASLSRTQQALRA 483

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST-LFILGTLESRLLNFD 642
           +  L  +  +    +       + +         V+   + S T + +LG L+  L +  
Sbjct: 484 IFRLLHRFADLNPSLDEPVEGSVAVEMLASRMSEVRWVDDPSPTEIELLGWLDLALDDSP 543

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI--YT 700
            L++ GLN    P+  + +PFL + ++S L+    ++   +  H  +    +R  +    
Sbjct: 544 ALVVCGLNHPFVPEAQSGDPFLPQSLRSTLHQSANDRRYARDVHAMQQLLTSRETVRFLV 603

Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNL--KKRGQCYLDWTRKLDYTTKQPHYKRPK 758
            S   +  PT  SR L             +L    R +  ++  +     +         
Sbjct: 604 GSHSADGSPTPPSRLLAAATPEEAAKRVCDLLTIPRPKIVIEPVQPPPAVSVDSQVFFAP 663

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
           P P       T S +     +  PY  Y R +L+L  +     +      G L H  + E
Sbjct: 664 PPPEPGRTIDTLSVTAFSAYLACPYRFYLRHVLRLRPLDDSPLELAANQFGDLVHGALEE 723

Query: 819 LIK------KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
             +          +    +   + +    HF           +      +   +    + 
Sbjct: 724 FGRGDYKNETDPKRIEEALIEELHRYAAKHFGDNT--STTVKLQVRQAQRRLKTVALRQA 781

Query: 873 KI-QSSIEKIFVN----------------IPAKMAIESIGIHLTGFADRIDLLKS-GFVD 914
           +   +  +   V                  P  + ++     L G  DRID     G   
Sbjct: 782 ERAAAGWQIHAVEDAVDEKKIHPITGKPKKPTGITLDGQFTGLRGRFDRIDFHPETGRWA 841

Query: 915 ITDYKT-GDNPKKETAQKL-------IDPQLSLE 940
           I DYKT G  P+K+  +KL       +D QL L 
Sbjct: 842 ILDYKTHGHKPEKKHLKKLPDGSTQWVDLQLPLY 875


>gi|19745860|ref|NP_606996.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS8232]
 gi|81632924|sp|Q8P1J3|ADDB_STRP8 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|19748010|gb|AAL97495.1| putative ATP-dependent exonuclease, subunit B [Streptococcus pyogenes
            MGAS8232]
          Length = 1071

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 134/986 (13%), Positives = 276/986 (27%), Gaps = 140/986 (14%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P        S        + L ++   ++  +
Sbjct: 75   SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                DL  L             D +KI     T  + +           A          
Sbjct: 130  LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            + +K  ++I G +        L+S + N+    I+   +        +         I  
Sbjct: 184  QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +    S H    LA+                ++       + V   +F           D
Sbjct: 235  NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              +      +      +L +  +++EE   +A ++R  L E  +   ++    ++     
Sbjct: 281  FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340

Query: 404  LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                   +F I   +    P++       + SL  +         I  ++K  L      
Sbjct: 341  QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                      D+                       ++   +   
Sbjct: 401  -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577
              L +     + PL     ++       S+ D   L    +   +N+      +L     
Sbjct: 436  DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE  K  + + +         K    + + +I   +     +        + I      +
Sbjct: 494  EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686
              +   +   GL +  +PK    +  LS   ++ +N     ++   A           A 
Sbjct: 554  PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725
                A  T+ L+ +     N      S +L+ L+  G                       
Sbjct: 614  SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKA 672

Query: 726  -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760
                       D  +   +    +    R L    ++   + P                 
Sbjct: 673  LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732

Query: 761  -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                +  P   S + +    N+ Y  + + +L L+        PD    G   H +   L
Sbjct: 733  VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790

Query: 820  IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +K    +               +S F++             +   I  S      ++  +
Sbjct: 791  MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936
            I+ I       + +    I + G  DRID L  G + + DYK+  N     T    + PQ
Sbjct: 850  IKVIDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGVVDYKSSANQFDIGTFYNGLSPQ 908

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L    AALK  +   I+  ++    Y+ L Q  K+D +T  +   +  E   K+L     
Sbjct: 909  LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQS 1022
               +    E+  +S      K+ + S
Sbjct: 962  YKGIFSEVEKEHLSTGAYQTKNALYS 987


>gi|315168380|gb|EFU12397.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX1341]
          Length = 1196

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTTDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q      +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|253580236|ref|ZP_04857502.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848329|gb|EES76293.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1124

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 110/1017 (10%), Positives = 266/1017 (26%), Gaps = 138/1017 (13%)

Query: 64   FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123
             +E+   K  +   I S   +    F      +      + +  + + L +++   R +L
Sbjct: 50   LVEMHPGKGILNIDILSFERLAYRVFEETGGDNR---KVLEDTGKSMVLQKMVQQHRKEL 106

Query: 124  PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-EKYGMWWL 182
              +   +     L               +  ++      + + E+L  +K   +      
Sbjct: 107  AYLGSQMNKPGYL-------------DEVKSLVSEFMQYDIREENLAEMKEKAQNQPLLE 153

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
            +    + I  + + E L            + ++  +     K      +  G TG  P  
Sbjct: 154  MKLKDVGILYQSFREFLK--GHYMTGEEVMDVLLKQLPFSEKLKGAEFLFDGFTGFTPIQ 211

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
              ++  +    +   V   +D            +  +        + +       +++  
Sbjct: 212  VNVLRELLVIADRISVTVTMD---------EREDAFSPGKPYQLFFMS------KQMIRA 256

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            L     D++    +      R       F           +I   +     +   ++ + 
Sbjct: 257  LAGLTRDLEDPVYLKPSGQSR-------FAQAPALQFLEKNIFRYRKGVYAEEQQEIKIF 309

Query: 363  EADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLE-LTRFGINIDISAG 418
             A +  EE    A  +   +        + A+IT +     R+  +      I   I   
Sbjct: 310  TAPSPLEEMREAARRMSELVRTCGYRYGEIAVITGNLEEYARLAAQVFEEADIPYFIDEK 369

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
              +        L + +    +   + ++   ++  +++            + LE   L  
Sbjct: 370  HSVMMNPFVEYLRAAMEMAVQGFPYESVFRYLRCGMSEVT------REQADKLENYVLAL 423

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                Y     K + + R    +    +   +   +EE +ELA                  
Sbjct: 424  GIRGYKKWSEKWVRVYRGMGAEKIQELNEIREIFAEEVRELAQGFGSGKKTVEEYCRILY 483

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                 +     +    +               K     + +    +  L  K++E     
Sbjct: 484  EFIQKSDVWQKLKRQERKFKES--------GDKAMEKEYNQIYGIVMDLLDKMVEILGEE 535

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
              N  E+  ++   +    V         + +     SRL     L   G+NEG  PK+T
Sbjct: 536  TVNRQEFRQLLESGLSQAKVALIPPSIDQVMVGDMERSRLKEIKALFFVGVNEGNIPKST 595

Query: 659  AKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIPT 710
                 LS + +              ++ +        +        LI + S        
Sbjct: 596  QTGGILSELDRDFFQEQGVELAPGPKELMNMQRFYLYLNMTKPGEKLILSYSDTNAKGEG 655

Query: 711  IASRWL------------------QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
            I+  +L                   R       ++           L   + +  T K+ 
Sbjct: 656  ISPAYLIGSICSLYLKLEIEGGAGVRPHKNSINNYCYPENPEAGIDLFLEKLVQETEKEH 715

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
               R +           YS+               +            +   +   G + 
Sbjct: 716  EDIREQADETDAMFGELYSWYLRNPEYRSRVQKLVQSAFAGKPEDIISQSVAKALYGEVS 775

Query: 813  HNI---ITELIK-------KRINKNTPEIN-------------HLMKQIIDSHFEKENLP 849
                  +            +   K T  +                ++   +   ++    
Sbjct: 776  PYSATRLERFAACAFAHFLQYGMKLTERVEYEFKPMDMGNVMHEALESFAEEVRKRGMKW 835

Query: 850  PHIDIIWR-HLFHKISHSFLEH----------------EEKIQ-SSIEKIFVNIPAK-MA 890
              +    R  +  +   + +                  E   +        +    +   
Sbjct: 836  TELTEQERNEIADRCLDNIVADYGNTVLKSSARNEYMIERTRRILRRTVWALQKQLEQGE 895

Query: 891  IESIGIHLT---GFADRIDLLKSG---FVDITDYKTGDNPKKETA--QKLIDPQLSLEAA 942
             +  G  +T   G  DR+D+++     +V + DYKTG+    +       +  QL +   
Sbjct: 896  FQPEGFEVTFGGGRIDRVDIMEDQNKVYVKVIDYKTGNT-SFDLVYLYHGLQLQLMIYLD 954

Query: 943  ALKAGSFSQIDCRK--VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
                    +   ++   A +FY  +K     + I  D +  SA  + E  +  L++ 
Sbjct: 955  GALRVEQKKYPDKEIIPAGVFYYNIKDPMIQEKIDADVEAVSAGLMKELKMNGLVQA 1011


>gi|307273803|ref|ZP_07555025.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0855]
 gi|306509488|gb|EFM78536.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis
            TX0855]
          Length = 1196

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 115/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTTDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I      G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGFGGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAH--DFEMANGTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q  +      ++    L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + G  DRID L         + DYK+         A   +  Q+          +   + 
Sbjct: 964  VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023

Query: 954  C-RKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|257878156|ref|ZP_05657809.1| exonuclease RexB [Enterococcus faecium 1,230,933]
 gi|257812384|gb|EEV41142.1| exonuclease RexB [Enterococcus faecium 1,230,933]
          Length = 1077

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 112/929 (12%), Positives = 246/929 (26%), Gaps = 137/929 (14%)

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
               + L ++   + T   + EDL  L  +        L    LK+    +   L +   
Sbjct: 24  RGFIRQLQELYSELRTGNIQPEDLMLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTQRAL 83

Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
           ++        +   A ++       +  I++G +       +L+  +       + L  L
Sbjct: 84  TNE-----DALSILANYMQTQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-L 137

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D      +   +T            + +  +  +  L+D      E  +           
Sbjct: 138 DRPYTADLPEVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP---------- 185

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                  + L    +    T   +    +       + L EA+N  EE   +A+ +R  +
Sbjct: 186 -------TELQLLQTMWEETSSQKKAAVHKIGGQEHLHLWEAENPTEEVRQLAVEIRRLV 238

Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              +   +   ++T + +L   +         I   I     +        + SL     
Sbjct: 239 SEENYRYRDIQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDR 298

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSL 491
                  I    K  L      E  L   K   +    +           +Y        
Sbjct: 299 YSYRLSDIMRFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTRE 358

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI- 550
              +                L E+   +  L    +   +  +   KT + +        
Sbjct: 359 KDWQFVAYDFEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKKSKTGQEAANVFYQFL 418

Query: 551 --SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             S   +  +          + +      E+    L  L  + +        +   + +I
Sbjct: 419 IQSGVQQQLLFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEI 477

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
           IT  ++  +          + I      R          GLN+ V+P        LS   
Sbjct: 478 ITSGLENLSYGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEE 537

Query: 669 QSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWL 716
           +  LN    +                        +GT  L  + +   + +     S +L
Sbjct: 538 REVLNQALPDGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYL 597

Query: 717 QRLLVLG------------------------------------GTDFFDNLKKRGQ---- 736
           +R+                                          D    + K  Q    
Sbjct: 598 RRITEYLSVPVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKE 657

Query: 737 -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYAR 788
                 + ++  ++  + +  +     P    E         S S ++   N  Y  + +
Sbjct: 658 LVLNSSWRNFALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQ 717

Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDS 841
             LKL               G  +H  +    K         +N +  +     ++++  
Sbjct: 718 FGLKLKER--TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDAQRRDFTEKVLQE 775

Query: 842 HFEK---ENLPPHIDIIW-RHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK------- 888
            F +   E L     + + R+   +      +   ++   + +  +   I          
Sbjct: 776 VFGELRFEILDSSARMNYIRYQLGQTIQKVTWALQKQSKNTGMHPLQTEILFGQIAGAKG 835

Query: 889 ---MAIE---SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLS 938
              + +       +H+ G  DRID+        + + DYK +G +     A   +  QL 
Sbjct: 836 ITGLELPLSNGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLL 895

Query: 939 LEA--AALKAGSFSQIDCRKVANLFYIRL 965
                A + A   +     K A  +Y+ +
Sbjct: 896 TYLDVALMDAVRLTGKAAVKPAGSYYLHV 924


>gi|116618576|ref|YP_818947.1| ATP-dependent nuclease, subunit B [Leuconostoc mesenteroides subsp.
            mesenteroides ATCC 8293]
 gi|122271224|sp|Q03W48|ADDB_LEUMM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|116097423|gb|ABJ62574.1| ATP-dependent nuclease, subunit B [Leuconostoc mesenteroides subsp.
            mesenteroides ATCC 8293]
          Length = 1159

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 109/1005 (10%), Positives = 279/1005 (27%), Gaps = 158/1005 (15%)

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPIS---------------PANAIWLAKNL 152
            ++  L RL        PD   D+   + L + +S                         L
Sbjct: 72   QVYSLTRLAWALMKNTPDRQPDIVEPTGLFMIVSNILREQSDNLPVFSRMQTKSGFVSAL 131

Query: 153  ADIIDIIETEEKKWEDLHALKNEK-----YGMWWLLAADFLKIASKYWTERLVELNASSP 207
               +  +       E+L  +  +                 L I +  +  R+ E   +  
Sbjct: 132  VAQLVELRASNVTPENLLEVLEKSADNIFLRQTLNAKLHDLAIVADDFNARMGENQITGQ 191

Query: 208  VGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                   + A A+ L       +     G  G   A   +++ +       + + G D  
Sbjct: 192  -----ETLIAFAKQLADLKLSNVAFYFDGFNGFTSAEMMVVNQLITTYPVTMGILG-DPE 245

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                            T                 ++ L I     ++   ++     R  
Sbjct: 246  KMGQQREGDVFFKPMTT-----------------VEQLSITARTAQQEVAITAATKMR-- 286

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                              + E +     +    + +  A+N   E   +A  +R SL ++
Sbjct: 287  ---PLSRTAQQVLGAWACLGEYRNFTGSRDEVHLNVFAAENPITEIKEVARRIRRSLVDD 343

Query: 386  K----KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                 +   +++ D       ++  +++F +   +   + +       ++ +L       
Sbjct: 344  PTLHLRDIIILSRDLTPYQAHIEAVMSQFELPYFLDMDVNMMNHPLVELILNL--LAPNK 401

Query: 441  NDFMAIATLVKHPLAKFGFP-----EKYLSRAKNALELVALRGNKNSYDIMDL-KSLVLD 494
              +  +  ++K  L +  F              + ++              D  +   L 
Sbjct: 402  FQYQTMLAILKTGLLRPTFENKIVSHDEFFDIVSHMDNYLYAYRPYESRWRDFSRPFKLF 461

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL-SISDW 553
            ++    ++T +   +   +         L   I++    L        +   ++  +  W
Sbjct: 462  QVTRDDDDTEISEDEKVNN-----RLEYLRHFIVEAFDELDDGFAMAKNLRQSVTHLVLW 516

Query: 554  TK---LTVTCLQNVCLDEHRKL--PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             +   +T   L+       +     +   EE  + L+    +++E       +  + +  
Sbjct: 517  LQKYHVTDALLEQRDDFIAQGNLSRSQQSEEVWQMLTKTLDEMVEIDGERSVSLTDIVTT 576

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            +   + G            L I      +   +  L   G      P        ++   
Sbjct: 577  LQAGLSGAKFSGIPNNLDQLMISEAGIVQNTQYKQLYFIGGTRQNLPAQVKNAALINDAE 636

Query: 669  QS------------DLNLKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIP-TIAS 713
            +S                 TA++ + +    F  +  +    +  +  + E +      S
Sbjct: 637  RSIVQPALQSGTNPRYLQNTAQQQMAEENLLFYGSLMSSIGSITLSYPILEPSGQLAEMS 696

Query: 714  RWLQRLLV--LGGTDFFDNLKKRGQCYLDW-----TRKLDYTTKQPHY------------ 754
             + +RL+       +   ++       L          L    K                
Sbjct: 697  PFFKRLVDTFNSEVEVIGSIPSSAASLLKQYVGTARATLSDLVKILPVYGQTAAFKAVQN 756

Query: 755  ----------KRPKPFPPLEAQPRTY---------------SFSEIKQLINDPYAVYARR 789
                      +R    P  +                     S S+++   ++P+A + + 
Sbjct: 757  VISNTMQDRLERVLSAPNYQNNTTKLKPEFISALFGERLNVSISQLESYYSNPFAYFLQY 816

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--INKNTPEIN-HLMKQIIDSHFEKE 846
             LKL        + +    GTL+H +   ++ +    NK+  +I    ++ ++  H + +
Sbjct: 817  GLKLQER--ATNELNVAQTGTLYHAVFENVLHELIVKNKSLRDITGDELRALVRQHMQSQ 874

Query: 847  NLPPHIDIIW---RHL-----FHKISHSFLEHE--EKIQSSIEKIFVNIPAKM---AIES 893
               P  +I+    +         ++  + + +      +++ +   V         ++  
Sbjct: 875  LALPAFEILNDSGKMRATTNYLTRVCETLVLNLQAAARENTSKPEAVEQLFGFSKESLPP 934

Query: 894  IGI---HLTGFADRID-LLKSGFV-DITDYKT-GDNPKKETAQKLIDPQLSLEAAALKAG 947
            +      + G  DR D    +G    I DYK+ G       A   +  QL     A +  
Sbjct: 935  LSFARMQVRGKLDRFDKQDVNGEFGTIIDYKSNGKTFNWGQAYDGLQMQLLTYWDAAQQS 994

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
            +  ++    +   F+ ++  +        D       +L  ++ K
Sbjct: 995  A-EKLGVAAIGGAFFAKISPEKTKITDKTDLNALFTGKLIPETFK 1038


>gi|332366979|gb|EGJ44719.1| exonuclease RexB [Streptococcus sanguinis SK1059]
          Length = 1093

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 118/923 (12%), Positives = 256/923 (27%), Gaps = 137/923 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L       T  L E +  S
Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNEGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       A +   +     ++I G T        L+  +     G  ++ G   +
Sbjct: 166 SSQIAAFAQHILAGDTDEELADLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +               
Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYIPH------------A 261

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
               +F           D  E  +   +   S + +    N++EE   +A ++R  + + 
Sbjct: 262 EAEDAFGRISKVLESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +         + I   +     ++       + SL         
Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDHYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       G+    ++   +  +          
Sbjct: 382 LEDLLNLLKTGL----------------------YGDLAQEELDHFEQYLRFADIKGAGK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561
                  +   + D +    +   ++  +      ++   +      +           L
Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMSPLQDFFKSRSQTASGLLAKFTDFVQAARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +     ++      EE  K  S +  +  +  +  K    +++ +I   +     +  
Sbjct: 480 TALLQGASQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALILSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN  T  +  
Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIVQNKSLLSDEDRARLNDATDSQAE 598

Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRL----------- 719
            Q A         +         T+ LI +     N +    S +L  L           
Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELILSAPALVNEVEDSMSTYLLELTVAPLSLPIIV 658

Query: 720 ------------------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK------ 755
                              ++       + +   +    W   +    K+   +      
Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718

Query: 756 ----------RPKPFPPLEAQPR--TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                     +P+    L  + +    S S + +     YA + + +L+L     +   P
Sbjct: 719 ISKELKTESLQPETLQALYPREQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861
           D    G   H I  ++++   + +         +      E E++          R L  
Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLL 836

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAI-------ESIGIHLTGFADRIDLL-KSGFV 913
             + +         S IE I        A            + ++G  DRID L K+  +
Sbjct: 837 DTARAT-GRVLAHPSGIETIGEETGFGTASKPFLILENGRAVTVSGKVDRIDRLTKTESL 895

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+GD     E     ++ QL    AA++  +  + D        Y+++      D
Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYKEDKG-TFGAMYLQMT-----D 949

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
            I   K   +  +   +S+K L 
Sbjct: 950 PIVALKDTKTLSDAVNQSMKPLQ 972


>gi|125718262|ref|YP_001035395.1| second subunit of major exonuclease [Streptococcus sanguinis SK36]
 gi|251764628|sp|A3CNU0|ADDB_STRSV RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|125498179|gb|ABN44845.1| Second subunit of major exonuclease, putative [Streptococcus
           sanguinis SK36]
          Length = 1093

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 121/923 (13%), Positives = 255/923 (27%), Gaps = 137/923 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L       T  L + +  S
Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       A +   +     ++I G T        L+  +     G  ++ G   +
Sbjct: 166 SSQIAAFAQHILAGDTDEELADLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +               
Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYIPH------------A 261

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
               +F           D  E+ +   +   S + +    N++EE   +A ++R  + E 
Sbjct: 262 EAEDAFGRISKILESRYDFSESTVSLSESDRSQLQIWATMNQKEELEYVAKSIRQRVHEG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       G+    ++   +  +          
Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDHFEQYLRFADIKGAGK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561
                  +   + D +    +   ++  +      ++   +      +           L
Sbjct: 420 LAKDFTANSQGKFDLDCLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +   E ++      EE  K  S +  +  +  +  K    +++ ++   +     +  
Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN  T  +  
Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598

Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721
            Q A         +         T+ L+ +     N +    S +L  L           
Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658

Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758
                                 L   +         Q +     R L           P 
Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPH 718

Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               + QP   S S + +     YA + + +L+L     +   P
Sbjct: 719 ISKELKTETLQSETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861
           D    G   H I  ++++   + +         +      E E++          R L  
Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLL 836

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913
             + +         S IE I             + +E    + ++G  DRID L K+  +
Sbjct: 837 DTARAT-GRVLAHPSGIETIGEETGFGSASTPFLTLENGRAVTVSGKVDRIDRLTKTESL 895

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+GD     E     ++ QL    AA++  +  Q D        Y+++      D
Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
            I   K   +  +   +S+K L 
Sbjct: 950 PIVALKDTKTLADAVSQSMKPLQ 972


>gi|116621024|ref|YP_823180.1| ATP-dependent nuclease subunit B-like protein [Candidatus Solibacter
            usitatus Ellin6076]
 gi|116224186|gb|ABJ82895.1| ATP-dependent nuclease subunit B-like protein [Candidatus Solibacter
            usitatus Ellin6076]
          Length = 897

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 99/849 (11%), Positives = 256/849 (30%), Gaps = 81/849 (9%)

Query: 213  ALMRAEAEHLMKGTKGPII------------IAGSTGSIPATARLMSTVANHPNGAIVLP 260
             L+   A  + +     +             IA    +   +ARL + +   P G   L 
Sbjct: 84   LLVEQAARRVARPEFERVTQFHGFCASLAKTIAEFASAGCDSARLAANLPEVPLGGAFLA 143

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK-LLDFLDIKREDVKRLGNVSNE 319
              +          +  +   +T++           +A   LD      +    +     +
Sbjct: 144  VYEEVDRELRRRGLALRGRILTAAAERIEAGGLPGIATIWLDGFHALPDPELSVIAALGK 203

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                ++ + ++ L   T           +     +  + +ALI+A     E   IA  + 
Sbjct: 204  HADLTLTLDEAELGEATLARLGALDFSEEQVRGTRTRNALALIKAPGIEREVEEIARRIL 263

Query: 380  MSLD-ENKKKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
              ++    ++  +I     +   +    L RFGI         L        L   ++A+
Sbjct: 264  RQVEGRPFREIGVIVRAPEIYAPILRATLDRFGIPARFYFDEKLERHPVIRFLAGAMDAM 323

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                +  A   +++          ++            +R       + +L+SL++D   
Sbjct: 324  LGGWEHGATLAVLR-------LAPRFADFGVMDRFDFDVRERIPRSGLGELRSLLIDE-- 374

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                             + +  A  L+  I   +  L  ++  + +     +     +  
Sbjct: 375  ---------------DGQPRPYAERLLHKIDS-LAALEEWRALELAPRDWAARFATLREI 418

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG--SCIKANAIEWIDIITRLIDG 615
                +      H        +     L                     ++   +  ++  
Sbjct: 419  FKPARPADEITHELALQYRSQAAVLDLFDEALDEAAQALHGIRHLPLEDYWRAVKSILRL 478

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-- 673
            + ++ +  + + + ++   E+R      + + G+ E  +PK   ++PF     +  LN  
Sbjct: 479  KPLRLEDGRRNVVHVMSAHEARQWVLPVVFVCGMVEKQFPKFHQQDPFFGDAARCRLNGS 538

Query: 674  ---LKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPT-IASRWLQRLLVLGGTDF 727
               ++TA ++  +    F+ A          +    +      + S +L+ L +      
Sbjct: 539  GIRVRTAAEFEREERMLFDAAITRATMLATLSYPEFDGRGERNLPSIYLEDLDLPAEDAV 598

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                  R +                  +  +    +  +    S + ++  +  P+  + 
Sbjct: 599  AVRPAPRARTGDS---------APVEIRNAQLLEYMRHRTAQLSPTALETFLQCPFQYFT 649

Query: 788  RRILKLD-FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            +R L+L       ++  D   +G + H ++ E   +       ++  L +++  +  +++
Sbjct: 650  QRFLRLKTAPDRPEQRLDFLTQGNVVHAVLAEWWLE-----PQDLAALFERVFAAQLKEK 704

Query: 847  NLPPHID-IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
             +PP       R+        F   E+       +  +       ++   + + G  DR+
Sbjct: 705  CIPPGYHTERLRNAMLDDLRRF-TSEDPWPKIAFRSQIETKFCFPLDD-TVEINGRIDRL 762

Query: 906  DLLKSGFVDITDYKTGDNPKKETAQKLID-PQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
            D    G   + DYK     + +   K     Q  L   A +            A ++Y+ 
Sbjct: 763  DTAPDGRTFVIDYKYSAAQRVKDKLKDASLLQAPLYMLAAQH------LNLDAAGMYYVG 816

Query: 965  LKQKFKI---DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
            +K   +          +     +   + + +  +EIV  +++G            +S   
Sbjct: 817  VKGGIEYAGWSDHPLLESLGVPENWFDITRQRTLEIVRQIRSGRVEVHP---ADRESCRF 873

Query: 1022 SEYDHLARV 1030
             +   + RV
Sbjct: 874  CDSKDICRV 882


>gi|227551327|ref|ZP_03981376.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecium
            TX1330]
 gi|257887558|ref|ZP_05667211.1| exonuclease RexB [Enterococcus faecium 1,141,733]
 gi|257896052|ref|ZP_05675705.1| exonuclease RexB [Enterococcus faecium Com12]
 gi|293378776|ref|ZP_06624933.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium
            PC4.1]
 gi|227179538|gb|EEI60510.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecium
            TX1330]
 gi|257823612|gb|EEV50544.1| exonuclease RexB [Enterococcus faecium 1,141,733]
 gi|257832617|gb|EEV59038.1| exonuclease RexB [Enterococcus faecium Com12]
 gi|292642569|gb|EFF60722.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium
            PC4.1]
          Length = 1175

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 118/965 (12%), Positives = 245/965 (25%), Gaps = 150/965 (15%)

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            + L +++     +L     ++                   + L ++   + T   + EDL
Sbjct: 99   MILRQILEKHEEELTIFRGEINKR-------------GFIRQLQELYSELRTGNIQPEDL 145

Query: 170  HAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              L  +        L    LK+    +   L E   S+        +   A ++      
Sbjct: 146  MLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTERALSNE-----DALAILANYMQTQDFT 200

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  I++G +       +L+  +       + L  LD      +   +T           
Sbjct: 201  NVQFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-LDRPYTADLPEVLTLFHETG----- 254

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                       KL   L     + K    V      ++       L         T   +
Sbjct: 255  -----------KLYFRLFQSARERKVPILVDRFAPEQNRPTELQLLQTM---WEETSSQK 300

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVK 403
                        + L EA+N  EE   +A+ +R  +   +   +   ++T + +L   + 
Sbjct: 301  KATVRKLGEQEALHLWEAENPTEEVRQLAVEIRRLVSEENYRYRDIQVLTKNMSLYGNIL 360

Query: 404  L-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                    I   I     +        + SL            I    K  L      E 
Sbjct: 361  RPIFQEMAIPFYIDEEQMMENHPLIEWVNSLFALDRYSYRLSDIMRFFKTELFLSMETET 420

Query: 463  YLSRAKNALELVALR-------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             L   K   +    +           +Y           +                L E+
Sbjct: 421  ELDEWKQERDEFRKKLDITENVALAYNYQGTYWTREKDWQFVAYDFEAEQIEDVQYLEEQ 480

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI---SDWTKLTVTCLQNVCLDEHRKL 572
               +  L    +      +   KT + +          S   +  +          + + 
Sbjct: 481  SNTIRRLFQKSVPAFFKKIKKSKTGQAAANVFYQFLIQSGVQQQLLFWRNQEVDRGNLEA 540

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
                 E+    L  L  + +        +   + +IIT  ++  +          + I  
Sbjct: 541  AR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEIITSGLENLSYGKIPTAIDQVRINR 599

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-------- 684
                R          GLN+ V+P        LS   +  LN    +              
Sbjct: 600  LELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEEREVLNQALPDGQFLFDPSKESISF 659

Query: 685  ---AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                      +GT  L  + +   + +     S +L+R+                +   D
Sbjct: 660  EPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYLRRITEYLSVPVERKEHLTIESDPD 719

Query: 741  ----------------WTRKLDYTTKQP-------------------------------H 753
                            +   LD     P                                
Sbjct: 720  CYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKELVLNSSWRNFALQIFESQEHLNVP 779

Query: 754  YKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
               P+        +    S S ++   N  Y  + +  LKL               G  +
Sbjct: 780  VSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQFGLKLKER--TVYGLTPAATGDFY 837

Query: 813  HNIITELIK-------KRINKNTPEINHLMKQIIDSHFEK---ENLPPHIDIIW-RHLFH 861
            H  +    K         +N    +     ++++   F +   E L     + + R+   
Sbjct: 838  HESLDRFFKLLFSNQLSLVNMTDAQRKDFTEKVLQEVFGELRFEILDSSARMNYIRYQLG 897

Query: 862  KISH--SFLEHEEKIQSSIEKIFVNIPAK----------MAIE---SIGIHLTGFADRID 906
            +     ++   ++   + +  +   I             + +       +H+ G  DRID
Sbjct: 898  QTIQKVAWALQKQSKNTGMHPLQTEILFGQIAGAKGITGLELPLSNGGKLHVRGKIDRID 957

Query: 907  LLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLSLEA--AALKAGSFSQIDCRKVANL 960
            +        + + DYK +G +     A   +  QL      A + A   +     K A  
Sbjct: 958  VASEQEDTWLSVIDYKSSGRSFDVTEAYYGMAMQLLTYLDVALMDAVRLTGKAAVKPAGS 1017

Query: 961  FYIRL 965
            +Y+ +
Sbjct: 1018 YYLHV 1022


>gi|227431966|ref|ZP_03913986.1| ATP-dependent nuclease, subunit B [Leuconostoc mesenteroides subsp.
            cremoris ATCC 19254]
 gi|227352251|gb|EEJ42457.1| ATP-dependent nuclease, subunit B [Leuconostoc mesenteroides subsp.
            cremoris ATCC 19254]
          Length = 1159

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 107/1005 (10%), Positives = 278/1005 (27%), Gaps = 158/1005 (15%)

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPIS---------------PANAIWLAKNL 152
            ++  L RL        PD   D+   + L + +S                         L
Sbjct: 72   QVYSLTRLAWALMKNTPDRQPDIVEPTGLFMIVSNILREQSDNLPVFSRMQTKSGFVSAL 131

Query: 153  ADIIDIIETEEKKWEDLHALKNEK-----YGMWWLLAADFLKIASKYWTERLVELNASSP 207
               +  +       E+L  +  +                 L I +  +  R+ E   +  
Sbjct: 132  VAQLVELRASNVTPENLLEILEKSADNIFLRQTLNAKLHDLAIVADDFNARMGENQITGQ 191

Query: 208  VGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                   + A A+ L       +     G  G   A   +++ +       +   G    
Sbjct: 192  -----ETLIAFAKQLADLKLSNVAFYFDGFNGFTSAEMMVVNQLITTYPVTMGFLGAPEK 246

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
            +                           +     ++ L I     ++   ++     R  
Sbjct: 247  MGQQ------------------REGDVFFKPMTTVEQLSITARTAQQEVAITAATKMR-- 286

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                              + E +     +    + +  A+N   E   +A  +R SL ++
Sbjct: 287  ---PLSRTAQQVLGAWACLGEYRNFTGSRDEVHLNVFVAENPITEIKEVARRIRRSLVDD 343

Query: 386  K----KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                 +   +++ D       ++  +++F +   +   + +       ++ +L       
Sbjct: 344  PTLHLRDIIILSRDLTPYQAHIEAVMSQFELPYFLDMDVNMMNHPLVELILNL--LAPNK 401

Query: 441  NDFMAIATLVKHPLAKFGFP-----EKYLSRAKNALELVALRGNKNSYDIMDL-KSLVLD 494
              +  +  ++K  L +  F              + ++              D  +   L 
Sbjct: 402  FQYQTMLAILKTGLLRPTFENKIVSHDEFFDIVSHMDNYLYAYRSYESRWRDFSRPFKLF 461

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL-SISDW 553
            ++    ++T +   +   +         L   I++    L        +   ++  +  W
Sbjct: 462  QVTRDDDDTEISEDEKVNN-----RLEYLRHFIVEAFDELDDGFAMAKNLRQSVTHLVLW 516

Query: 554  TK---LTVTCLQNVCLDEHRKL--PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             +   +T   L+       +     +   EE  + L+    +++E       +  + +  
Sbjct: 517  LQKYHVTDALLEQRDDFIAQGNLSRSQQSEEVWQMLTKTLDEMVEIDGERSVSLTDIVTT 576

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            +   + G            L I      +   +  L   G      P        ++   
Sbjct: 577  LQAGLSGAKFSGIPNNLDQLMISEAGIVQNTQYKQLYFIGGTRQNLPAQVKNAALINDAE 636

Query: 669  QS------------DLNLKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIP-TIAS 713
            +S                 TA++ + +    F  +  +    +  +  + E +      S
Sbjct: 637  RSLVQPALQSGTNPRYLQNTAQQQMAEENLLFYGSLMSSIGSITLSYPILEPSGQLAEMS 696

Query: 714  RWLQRLLV--LGGTDFFDNLKKRGQCYLDW-----TRKLDYTTKQPHY------------ 754
             + +RL+       +   ++       L          L    K                
Sbjct: 697  TFFKRLVDTFNSEVEVIGSIPSSAASLLKQYVGTARATLSDLVKISPVYGQTAAFKAVQN 756

Query: 755  ----------KRPKPFPPLEAQPRTY---------------SFSEIKQLINDPYAVYARR 789
                      +R    P  +                     S S+++   ++P+A + + 
Sbjct: 757  VISNTMQDRLERVLSAPNYQNNTTKLKPEFISALFGERLNVSISQLESYYSNPFAYFLQY 816

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--INKNTPEIN-HLMKQIIDSHFEKE 846
             LKL        + +    GTL+H +   ++ +    NK+  +I    ++ ++  H + +
Sbjct: 817  GLKLQER--ATNELNVAQTGTLYHAVFENVLHELIVKNKSLRDITGDELRALVRQHMQSQ 874

Query: 847  NLPPHIDIIW---RHL-----FHKISHSFLEHE--EKIQSSIEKIFVNIPAKM---AIES 893
               P  +I+    +         ++  + + +      +++ +   V         ++  
Sbjct: 875  LALPAFEILNDSGKMRETTNYLTRVCETLVLNLQAAARENTSKPEAVEQLFGFSKESLPP 934

Query: 894  IGI---HLTGFADRID-LLKSGFV-DITDYKT-GDNPKKETAQKLIDPQLSLEAAALKAG 947
            +      + G  DR D    +G    I DYK+ G       A   +  QL     A +  
Sbjct: 935  LSFARMQVRGKLDRFDKQDVNGEFGTIIDYKSNGKTFNWGQAYDGLQMQLLTYWDAAQQS 994

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
            +  ++    +   F+ ++  +        D       +L  ++ K
Sbjct: 995  A-EKLGVAAIGGAFFAKISPEKTKITDKTDLNALFTGKLMPETFK 1038


>gi|71903239|ref|YP_280042.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS6180]
 gi|123640149|sp|Q48UB9|ADDB_STRPM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|71802334|gb|AAX71687.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS6180]
          Length = 1071

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 136/986 (13%), Positives = 276/986 (27%), Gaps = 140/986 (14%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P        S        + L ++   ++  +
Sbjct: 75   SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                DL  L             D +KI     T  + +           A          
Sbjct: 130  LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            + +K  I+I G +        L+S + N+    I+   +        +         I  
Sbjct: 184  QLSKTVIVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +    S H    LA+                ++       + V   +F           D
Sbjct: 235  NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              +      +      +L +  +++EE   +A ++R  L E  +   ++    ++     
Sbjct: 281  FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340

Query: 404  LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                   +F I   +    P++       + SL  +         I  ++K  L      
Sbjct: 341  QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                      D+                       ++   +   
Sbjct: 401  -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577
              L +     + PL     ++       S+ D   L    +   +N+      +L     
Sbjct: 436  DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFFKKIRLAENMQGLAQSQLEVEKN 493

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE  K  + + +         K    + + +I   +     +        + I      +
Sbjct: 494  EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686
              +   +   GL +  +PK    +  LS   ++ +N     ++   A           A 
Sbjct: 554  PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725
                A  T+ L+ +     N      S +L+ L+  G                       
Sbjct: 614  SLFNA-ATKELVLSVPTVINETFDDLSPYLKELISFGLPLLDKGKNYLSYDNSDIGNYKA 672

Query: 726  -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760
                       D  +   +    +    R L    ++   + P                 
Sbjct: 673  LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732

Query: 761  -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                +  P   S + +    N+ Y  + + +L L+        PD    G   H +   L
Sbjct: 733  VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790

Query: 820  IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +K    +               +S F++             +   I  S      ++  +
Sbjct: 791  MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936
            I+ I       + +    I + G  DRID L  G + I DYK+  N     T    + PQ
Sbjct: 850  IKVIDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L    AALK  +   I+  ++    Y+ L Q  K+D +T  +   +  E   K+L     
Sbjct: 909  LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQS 1022
               +    E+  +S      K+ + S
Sbjct: 962  YKGIFSEVEKEHLSTGAYQTKNALYS 987


>gi|327470753|gb|EGF16209.1| exonuclease RexB [Streptococcus sanguinis SK330]
          Length = 1093

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 120/923 (13%), Positives = 256/923 (27%), Gaps = 137/923 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L       T  L + +  S
Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       A +   +     ++I G T        L+  +     G  ++ G   +
Sbjct: 166 SSQIAAFTQHILAGDADEELENLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +              +
Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISHAEAEDAFGRISKI 273

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
           + S+      T  +  TD             S + +    N++EE   +A ++R  + + 
Sbjct: 274 LESRYDFSESTVSLSETDR------------SQLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       G+    ++   +  +          
Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDHFEQYLRFADIKGAAK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561
                  +   + D +    +   ++  +      ++   +      +           L
Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +     ++      EE  K  S +  +  +  +  K    +++ ++   +     +  
Sbjct: 480 TALLQGASQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN  T  +  
Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598

Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721
            Q A         +         T+ L+ +     N +    S +L  L           
Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSVSTYLLELTAAPLSLPIIV 658

Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758
                                 L   +         Q +     R L           P+
Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718

Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               + QP   S S + +     YA + + +L+L     +   P
Sbjct: 719 ISKELKTETLQSETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861
           D    G   H I  ++++   + +         +      E E++          R L  
Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLL 836

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913
             + +         S IE I             + +E    + ++G  DRID L K+  +
Sbjct: 837 DTARAT-GRVLAHPSGIETIGEETGFGSASTPFLTLENGRAVTVSGKVDRIDRLTKTESL 895

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+GD     E     ++ QL    AA++  +  Q D        Y+++      D
Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
            I   K   +  +   +S+K L 
Sbjct: 950 PIVALKDTKTLADAVNQSMKPLQ 972


>gi|257898679|ref|ZP_05678332.1| exonuclease RexB [Enterococcus faecium Com15]
 gi|257836591|gb|EEV61665.1| exonuclease RexB [Enterococcus faecium Com15]
          Length = 1175

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 118/965 (12%), Positives = 246/965 (25%), Gaps = 150/965 (15%)

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            + L +++     +L     ++                   + L ++   +     + EDL
Sbjct: 99   MILRQILEKHEEELTIFRGEINKR-------------GFIRQLQELYSELRIGNIQPEDL 145

Query: 170  HAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              L  +        L    LK+    +   L E   S+        +   A ++      
Sbjct: 146  MLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTERALSNE-----DALAILANYMQTQDFT 200

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  I++G +       +L+  +       + L  LD      +   +T           
Sbjct: 201  NVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-LDRPYTADLPEVLTLFHETG----- 254

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                       KL   L     + K    V      ++   +   L         T   +
Sbjct: 255  -----------KLYFRLFQSARERKVPILVDRFAPEQNRPTALQLLQTM---WEETSSQK 300

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVK 403
                        + L E++N  EE   +A+ +R  +   +   +   ++T + +L   + 
Sbjct: 301  KATVRKLGEQEALHLWESENPTEEVRQLAVEIRRLVSEENYRYRDIQVLTKNMSLYGNIL 360

Query: 404  L-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                    I   I     +        + SL            I    K  L      E 
Sbjct: 361  RPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDRYSYRLSDIMRFFKTELFLSMETET 420

Query: 463  YLSRAKNALELVALR-------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             L   K   +    +           +Y           +                L E+
Sbjct: 421  ELDEWKQERDEFRKKLDITENVALAYNYQGTYWTREKDWQFVAYDFEAEQIEDVQHLEEQ 480

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI---SDWTKLTVTCLQNVCLDEHRKL 572
               +  L    I      +   KT + +          S   +  +          + + 
Sbjct: 481  SNTIRRLFQKSIPAFFKKIKKSKTGQVAANVFYQFLIQSGVQQQLLFWRNQEVDRGNLEA 540

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
                 E+    L  L  + +        +   + +IIT  ++  +          + I  
Sbjct: 541  AR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEIITSGLENLSYGKIPTAIDQVRINR 599

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-------- 684
                R          GLN+ V+P        LS   +  LN    +              
Sbjct: 600  LELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEEREVLNQALPDGQFLFDPSKESISF 659

Query: 685  ---AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                      +GT  L  + +   + +     S +L+R+                +   D
Sbjct: 660  EPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYLRRITEYLSVPVERKEHLTIESDPD 719

Query: 741  ----------------WTRKLDYTTKQP-------------------------------H 753
                            +   LD     P                                
Sbjct: 720  CYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKELVLNSSWRNFALQIFESQEHLNVP 779

Query: 754  YKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
               P+        +    S S ++   N  Y  + +  LKL               G  +
Sbjct: 780  VSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQFGLKLKER--TVYGLTPAATGDFY 837

Query: 813  HNIITELIK-------KRINKNTPEINHLMKQIIDSHFEK---ENLPPHIDIIW-RHLFH 861
            H  +    K         +N    +     ++++   F +   E L     + + R+   
Sbjct: 838  HESLDRFFKLLFSNQLSLVNMTDAQRKDFTEKVLQEVFGELRFEILDSSARMNYIRYQLG 897

Query: 862  KISH--SFLEHEEKIQSSIEKIFVNIPAK----------MAIE---SIGIHLTGFADRID 906
            +     ++  H++   + +  +   I             + +       +H+ G  DRID
Sbjct: 898  QTIQKVAWALHKQSKNTGMHPLQTEILFGQIAGAKGITGLELPLSNGGKLHVRGKIDRID 957

Query: 907  LLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLSLEA--AALKAGSFSQIDCRKVANL 960
            +        + + DYK +G +     A   +  QL      A + A   +     K A  
Sbjct: 958  VASEQEDTWLSVIDYKSSGRSFDVTEAYYGMAMQLLTYLDVALMDAVRLTGKAAVKPAGS 1017

Query: 961  FYIRL 965
            +Y+ +
Sbjct: 1018 YYLHV 1022


>gi|78486039|ref|YP_391964.1| hypothetical protein Tcr_1698 [Thiomicrospira crunogena XCL-2]
 gi|78364325|gb|ABB42290.1| DNA helicase/exodeoxyribonuclease V, subunit B [Thiomicrospira
            crunogena XCL-2]
          Length = 922

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 97/717 (13%), Positives = 214/717 (29%), Gaps = 105/717 (14%)

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKK-------SALITA-------------DRNLA 399
             L  A N ++E   IA+     L +  K         A++               D  L 
Sbjct: 211  RLYSALNPQDEIQQIALWCAEQLKQQVKTKPLHAIRIAVVAPNLAEVQQPLSWALDEVLY 270

Query: 400  RRVKLELT---RFGINIDISAGIPLSTTLHSSILTSLLNAIFKL---NDFMAIATLVKHP 453
            ++    L          +IS G PL+ T         L           +   ++ +  P
Sbjct: 271  QQFGQALPLKAARHTLYNISLGTPLAQTPIVKNALQTLAFAMMPEKTLAYADWSSWLTSP 330

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                   ++  +  +      A     N    +  K    +RI   K+        ++  
Sbjct: 331  YTLGSLVQRQKADVRCRKLQWASFKWPNLLQAIQQKETEKNRIQLPKSLMQALEKAAQAP 390

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                 +    +    + +      +++K                                
Sbjct: 391  RSTSLILSQFIAQAEKKLQEFRWAESSKERAL---------------------------S 423

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            ++  +++   L +L S      +  K     W+ ++ R ++    +P+ +    + I+GT
Sbjct: 424  SIEMQQKETFLEALASFAQLNMTQAKQPVSVWLGLLKRYLNETVHQPQTQGIVPIQIMGT 483

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA---HDFEM 690
            LE+    FD+L + GL +  WP+    NPFL   +Q    L  ++              +
Sbjct: 484  LEAGGQAFDSLWVMGLTDEAWPRPPNPNPFLPMALQRTYGLPRSDALRELNYARQVTLRL 543

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            A  +  ++++   + ++   + S  L  L  L     ++ +  +      W         
Sbjct: 544  AKSSPEIVWSYPQQLDDRVALPSPLLT-LAELKAAQIYEPVPYQSLATQLWA----QGEP 598

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF-IPHFKKDPDRTDRG 809
                   +                +      P   +    L     +   ++       G
Sbjct: 599  LEWVADHQGPEVPLGTRVPGGSGILTAQNKCPLMAFMDYRLGARQQLEDVEEGMRSNHLG 658

Query: 810  TLFHNIITELIKK------RINKNTPEINHLMKQIIDSHFEKEN--LPPHIDIIWRHLFH 861
            TL H ++    ++       +  +   ++ L+ Q+++      +     H   + ++  H
Sbjct: 659  TLVHAVLEAFWRQVKTQHNLLEMDEKAVSELVSQLLEDAMAPLSSQFDAHYLSLEQNRIH 718

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID-----LLKSGFVDIT 916
            ++   +L  E     + + +        +I  I  +L    DR+D             I 
Sbjct: 719  QLILDWLALERVR-PNFKVVAFEENHTPSIGGIEFNL--KIDRVDEVFDAETGELSRLIL 775

Query: 917  DYKTGDNPKKETAQKLI-DPQLSLEAAALKAG---------------------SFSQIDC 954
            DYKTG     +  ++ I  PQL++   A                         S   +  
Sbjct: 776  DYKTGKASVGDLLKEPIEAPQLAVYLHAYHDVVAGLGYGILHSDDGVKFNTLISDEGVML 835

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
            +  + L + +L  K        D +  S  +  +     + E+ T +Q G+      
Sbjct: 836  KDRSQLIFAKLAAKEGS-----DFEGMSWSDFLQALRDEVSELATQIQQGQAEMTFR 887


>gi|69246356|ref|ZP_00603912.1| exonuclease RexB [Enterococcus faecium DO]
 gi|293569778|ref|ZP_06680865.1| exonuclease RexB [Enterococcus faecium E1071]
 gi|68195309|gb|EAN09760.1| exonuclease RexB [Enterococcus faecium DO]
 gi|291587526|gb|EFF19403.1| exonuclease RexB [Enterococcus faecium E1071]
          Length = 1175

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 112/929 (12%), Positives = 247/929 (26%), Gaps = 137/929 (14%)

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                + L ++   + T   + EDL  L  +        L    LK+    +   L +   
Sbjct: 122  RGFIRQLQELYSELRTGNIQPEDLMLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTQRAL 181

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
            ++        +   A ++       +  I++G +       +L+  +       + L  L
Sbjct: 182  TNE-----DALSILANYMQTQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-L 235

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            D      +   +T            + +  +  +  L+D      E  +           
Sbjct: 236  DRPYTADLPEVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP---------- 283

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                   + L    +    T   +    +       + L EA+N  EE   +A+ +R  +
Sbjct: 284  -------TELQLLQTMWEETSSQKKAAVHKLGGQEHLHLWEAENPTEEVRQLAVEIRRLV 336

Query: 383  ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
               +   +   ++T + +L   +         I   I     +        + SL     
Sbjct: 337  SEENYRYRDIQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDR 396

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSL 491
                   I    K  L      E  L   K   +    +           +Y        
Sbjct: 397  YSYRLSDIMRFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTRE 456

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI- 550
               +                L E+   +  L    +   +  +   KT + +        
Sbjct: 457  KDWQFVAYDFEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKKSKTGQEAANVFYQFL 516

Query: 551  --SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
              S   +  +          + +      E+    L  L  + +        +   + +I
Sbjct: 517  IQSGVQQQLLFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEI 575

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            IT  ++  +          + I      R          GLN+ V+P        LS   
Sbjct: 576  ITSGLENLSYGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEE 635

Query: 669  QSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWL 716
            +  LN    +                        +GT  L  + +   + +     S +L
Sbjct: 636  REVLNQALPDGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYL 695

Query: 717  QRLLVLG------------------------------------GTDFFDNLKKRGQ---- 736
            +R+                                          D    + K  Q    
Sbjct: 696  RRITEYLSVPVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKE 755

Query: 737  -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYAR 788
                  + ++  ++  + +  +     P    E         S S ++   N  Y  + +
Sbjct: 756  LVLNSSWRNFALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQ 815

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDS 841
              LKL               G  +H  +    K         +N +  +     ++++  
Sbjct: 816  FGLKLKER--TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDTQRRDFTEKVLQE 873

Query: 842  HFEK---ENLPPHIDIIW-RHLFHKISH--SFLEHEEKIQSSIEKIFVNIPAK------- 888
             F +   E L     + + R+   +     ++   ++   + +  +   I          
Sbjct: 874  VFGELRFEILDSSARMNYIRYQLGQTIQKVAWALQKQSKNTGMHPLQTEILFGQIAGAKG 933

Query: 889  ---MAIE---SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLS 938
               + +       +H+ G  DRID+        + + DYK +G +     A   +  QL 
Sbjct: 934  ITGLELPLSNGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLL 993

Query: 939  LEA--AALKAGSFSQIDCRKVANLFYIRL 965
                 A + A   +     K A  +Y+ +
Sbjct: 994  TYLDVALMDAVRLTGKAAVKPAGSYYLHV 1022


>gi|293365448|ref|ZP_06612157.1| ATP-dependent exonuclease RexB [Streptococcus oralis ATCC 35037]
 gi|307703403|ref|ZP_07640345.1| ATP-dependent nuclease subunit B [Streptococcus oralis ATCC 35037]
 gi|291315816|gb|EFE56260.1| ATP-dependent exonuclease RexB [Streptococcus oralis ATCC 35037]
 gi|307622810|gb|EFO01805.1| ATP-dependent nuclease subunit B [Streptococcus oralis ATCC 35037]
          Length = 1091

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 115/948 (12%), Positives = 253/948 (26%), Gaps = 154/948 (16%)

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
           P  +++  +              P  ++                     + L ++   + 
Sbjct: 76  PAKTSLDDIGLGMTFYKCLAELDPKDLRVYGA---------IKQDPQFIQQLMELYHEMT 126

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA- 219
           T +  + DL +L +E             +  + Y  +        +       L+ A   
Sbjct: 127 TAQMSFLDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----GQLAQGSQLSHLIEAIEN 178

Query: 220 -EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
            +     ++  ++I G T       R++  +     G  ++              I   +
Sbjct: 179 DKVSSDFSQIALVIDGFTRFSAEEERVVDLLHR--KGVEIV--------------IGAYA 222

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
           +     +     +   +  + L  L  K            +   ++     SF       
Sbjct: 223 SKKAYISPFTEGNLYQASVEFLHHLGAK-------YQTPAQDRSQTHEKMDSFDKASRLL 275

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITA 394
             + D  E  +   +K   ++ +     ++EE   +A ++R  L    + + K   ++  
Sbjct: 276 ESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLHDHPELSYKNFRILLG 335

Query: 395 DRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
           D    R        ++ I   +     +S    +    S+L           +  L++  
Sbjct: 336 DVASYRLSLKTIFDQYQIPFYLGRSESMSHHPLTQYAESILRLKRYRFRQEDLINLLRTG 395

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
           L                        + +  DI   +  +         +      +S   
Sbjct: 396 L----------------------YTDLSQADIDAFEQYLRYLGINGLPSYQQTFTKSHHG 433

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           + D E    L   +L  +  L   +  K         +      ++            L 
Sbjct: 434 KFDLERLNSLRLRVLAPLETLFASRKQKAENLLQKWNAFLKNAALSKQMQELTATMETLE 493

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                E  K    +  +     +  + +  +++ ++   +     +       T+ +   
Sbjct: 494 QERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLSLLHSGMSLSQYRTIPATVDTVLVQSY 553

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA-------H 686
                +  D +   GL +   PK       L+   +  LN  T E      A       +
Sbjct: 554 DLIAPMTADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKN 613

Query: 687 DFEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF-------------- 728
            + M        + LI +     N   +  S +LQ L+  G +                 
Sbjct: 614 RYTMLSLVNAARKQLILSAPSLLNENESKESAYLQELVGFGFSRLEKKIHQKSLSKDDMG 673

Query: 729 --DNLKKRGQCYLDWT--------------------RKLDYTTKQPHYKRPKP------- 759
              +L      Y                        +KLD            P       
Sbjct: 674 SYHSLLSSLVSYHQQAGSSENEEDLTFVKVLARVMGKKLDQKGLTNPALPTSPSSKPLEK 733

Query: 760 ----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                     +    S S + +   + Y+ + R +L L      +  PD    G   H I
Sbjct: 734 ETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EELRLRPDARSHGNFLHRI 791

Query: 816 ITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
           +   +K     +  +      +    +  FE            + +   ++ +   H  +
Sbjct: 792 LERALKLPAENSFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEVLLDVARTT-GHILR 850

Query: 874 IQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPK 925
              +IE I             + ++    +H+ G  DRID L   G + + DYK+     
Sbjct: 851 HNPAIETIQEEATFGGKDQAFIQLDNGRSVHVRGKVDRIDRLKADGALGVVDYKS----S 906

Query: 926 KETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
               Q       ++ QL    AALK                Y+ + + 
Sbjct: 907 LTQFQFPHFFNGLNSQLPTYLAALKREGEQDF-----FGAMYLEMAEP 949


>gi|240172137|ref|ZP_04750796.1| ATP-dependent DNA helicase [Mycobacterium kansasii ATCC 12478]
          Length = 1066

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 103/998 (10%), Positives = 249/998 (24%), Gaps = 118/998 (11%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV------EEKFTADLLLSYN 98
              V     T++A  +L         + + + P   +              F   LL  Y 
Sbjct: 39   GQVLGLTFTRKAAGQLLRRVRSRLARLAGLEPGAAACESAGTPVVSTYHAFAGSLLRDYG 98

Query: 99   LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII-- 156
            L  PV     LL    L  +    +     +L   +  +     A  + L   LA+ +  
Sbjct: 99   LLLPVEPDTSLLTETELWQLAFEVVNGYRGEL--RTQKTPAAVTAMVLRLWGQLAEHLVD 156

Query: 157  -DIIETEEKKWEDL-HALKNEKYGMWWLLAADFLKIAS------------KYWTERLVEL 202
               +     + E L H L    Y      +   L++ +                ER+   
Sbjct: 157  TGQLRDTHVELERLVHTLPPGPYQRDRAPSQWLLRMLATQNERAELVPLLDALLERMRAE 216

Query: 203  NASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNG 255
                      +  R  A        ++     +++     +  +    +S++      +G
Sbjct: 217  KVMDFGLQMASAARLAASFPQVGRELRNQFRVVLLDEYQDTGHSQRVALSSLFGGGVDDG 276

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
              +    D       W   +  +    +++   S      + +L          +     
Sbjct: 277  LALTAVGDPIQSIYGWRGASATNLPRFTTDFPLSDGTPAPILELRTSWRNPPRALHLANA 336

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
            +S E   RS+ +      PD         L   +   +   +D             +   
Sbjct: 337  ISAEARRRSVAVRALRARPDAPPGTVRCALLPDVQAERDWIADH------------LQRR 384

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                 +       +A++      A  +   L   GI +++     L +    + + ++L 
Sbjct: 385  YLRARADGVGPPTAAVLVRRNADAAPIADALRARGIPVEVVGLAGLLSIPEVADVVAMLR 444

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             + +     A   ++  P  ++    + L+        +A   N++S + +   +     
Sbjct: 445  LVAEPTAGTAAMQVLTGP--RWRLGGRDLAALWRRALGLAGGPNESSPESIAAAAGPDSD 502

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                 +    P      S       V L   +      L     +  +    +   D   
Sbjct: 503  TPCLADALSDPGPADCYSAAGYRRIVALAGELKLLRAQLGHCLPDLVAEVRRVLGVDCEA 562

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
               +            L             +  S          A  + ++D+   + +G
Sbjct: 563  RAKSAATAE-WSGTEHLDAFSDVVAKYAERATSSCTEVPAKASVAGLLAYLDVAAEVENG 621

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV-------- 667
                        + +L    ++ L +  + +  L+ GV+P   +++ +L+          
Sbjct: 622  LPPAQPAVARDRVQVLTVHAAKGLEWQVVAVAHLSGGVFPSTASRSTWLTDPGELPPLLR 681

Query: 668  ----------------------------MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
                                        +          +   +    +         + 
Sbjct: 682  GDRVSTGVLGIPVLDTSAVTNRKQLSDKISEHRRQLDQRRVDEERRLLYVGVTRAEDTLL 741

Query: 700  TRSLRENN---IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
                +       P   S +L  +  +                                  
Sbjct: 742  VSGHQWGATGVKPCGPSEFLCEVKDIIDHSVAAGDPCGIVDQWAPAPAEGERNPLRDNAI 801

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVY-----------------ARRILKLDFIPHF 799
               +P      R        +L+ +  A                   A    +   +   
Sbjct: 802  QAVWPAEPLGARRADVERGARLVAEATAAEVIDAGVADTEGWVQDVDALLAERARAVQPP 861

Query: 800  KKDPDRT-------DRGTLFHNIITELIKKRINKNTPEIN-------HLMKQIIDSHFEK 845
             ++           + G         L  +  ++  P+          + +         
Sbjct: 862  ARELPGQLSVSGLVELGRDPAKARQRLAHRLPSRPDPQALLGNAFHSWVQRFYGAELLFD 921

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
                P           +++           ++   I V +P +M +      + G  D +
Sbjct: 922  LGDLPGAADPEVSNAEELAKLRAAFTASPWAARTPIAVEVPFEMPVGDT--VVRGRIDAV 979

Query: 906  DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
                 G V + D+KTG+ P+    ++    QL++   A
Sbjct: 980  FADPDGGVTVVDWKTGEPPRGPEGRRQAAVQLAVYRLA 1017


>gi|71910407|ref|YP_281957.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS5005]
 gi|71853189|gb|AAZ51212.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS5005]
          Length = 1071

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 136/986 (13%), Positives = 278/986 (28%), Gaps = 140/986 (14%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P        S        + L ++   ++  +
Sbjct: 75   SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                DL  L             D +KI     T  + +           A          
Sbjct: 130  LSVHDLTGLD------HPKKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            + +K  ++I G +        L+S + N+    I+   +        +         I  
Sbjct: 184  QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +    S H    LA+                ++       + V   +F           D
Sbjct: 235  NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              +      +      +L +  +++EE   +A ++R  L E  +   ++    ++     
Sbjct: 281  FSQVDWQLQKSDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340

Query: 404  LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                   +F I   +    P++       + SL  +         I  ++K  L      
Sbjct: 341  QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                      D+                       ++   +   
Sbjct: 401  -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577
              L +     + PL     ++       S+ D   L    +   +N+      +L     
Sbjct: 436  DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE  K  + + +         K    + + +I   +     +        + I      +
Sbjct: 494  EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686
              +   +   GL +  +PK    +  LS   ++ +N     ++   A           A 
Sbjct: 554  PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725
                A  T+ L+ + S   N      S +L+ L+  G                       
Sbjct: 614  SLFNA-ATKELVLSVSTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKA 672

Query: 726  -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760
                       D  +   +    +    R L    ++   + P                 
Sbjct: 673  LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732

Query: 761  -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                +  P   S + +    N+ Y  + + +L L+        PD    G   H +   L
Sbjct: 733  VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790

Query: 820  IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +K    +               +S F++             +   I  S      ++  +
Sbjct: 791  MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936
            I+ I      ++ +    I + G  DRID L  G + I DYK+  N     T    + PQ
Sbjct: 850  IQVIDQEKNFQLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L    AALK  +   I+  ++    Y+ L Q  K+D +T  +   +  E   K+L     
Sbjct: 909  LMTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQS 1022
               +    E+  +S      K+ + S
Sbjct: 962  YKGIFSEVEKEHLSTGAYQTKNALYS 987


>gi|327540075|gb|EGF26670.1| ATP-dependent nuclease subunit B-like protein [Rhodopirellula
           baltica WH47]
          Length = 968

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 91/633 (14%), Positives = 196/633 (30%), Gaps = 68/633 (10%)

Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENK-KKSALITADRNLARRVKLELTRFGINID 414
             D  LI A +  ++  ++   L     + +  +  +   D +    ++      G+   
Sbjct: 263 LQDGQLISAGDISDQTAAVMETLAELGQKYRVDQITIGVTDESQVEPIENRCDLLGVATH 322

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
              G  +  T    ++  ++  + +   + ++A LV+H                +    V
Sbjct: 323 RHLGHRVGQTAVGRLMHLIVTYLQRR-TWRSLAALVRH---------------ADVTRYV 366

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
           + R   +      L+ L     +    +   P        E  +    ++D  L  +   
Sbjct: 367 SERIPDHPESETWLRELDQLLSSAFPRSVDEPLPAEVQQTETADQIRTVLDQWLSPLIQN 426

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL----------WFEEEGKTL 584
              +  +  +    +I    +L     Q +   +   +               ++  + +
Sbjct: 427 TEPQPIRQWSETLQAI--LLELHGEAAQTLLPIDPDSMEEPAETEPDASLSRTQQALRAV 484

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST-LFILGTLESRLLNFDT 643
             L  +  +    +       + +         V+   + S T + +LG L+  L +   
Sbjct: 485 FRLLHRFADLSPSLDEPVEGSVAVEMLASRMSEVRWVDDPSPTDVELLGWLDLALDDSPA 544

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI--YTR 701
           L++ GLN    P+  + +PFL + ++S L+    ++   +  H  +    +R  +     
Sbjct: 545 LVVCGLNHPFVPEAQSGDPFLPQSLRSTLHQSANDRRYARDVHAMQQLLTSRETVRFLVG 604

Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNL--KKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
           S   +  PT  SR L             +L    R +  ++  +     +         P
Sbjct: 605 SHSADGSPTPPSRLLAAATPEEAAKRVCDLLTIPRPKIVIEPVQPPPAVSVDSQVFFAPP 664

Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
            P       T S +     +  PY  Y R +L+L  +     +      G L H  + E 
Sbjct: 665 PPEPGRTIDTLSVTAFSAYLACPYRFYLRHVLRLRPLDDSPLELAANQFGDLVHGALEEF 724

Query: 820 IK------KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
            +          +    +   + +    HF           +      +   +    + +
Sbjct: 725 GRGDYKNETDPKRIEEALIEELHRYAVKHFGDNT--STTVKLQVRQAQRRLKTVALRQAE 782

Query: 874 I-QSSIEKIFVN----------------IPAKMAIESIGIHLTGFADRIDLLKS-GFVDI 915
              +  +   V                  P  + ++     L G  DRID     G   I
Sbjct: 783 RAAAGWQIHAVEDAVDEKKIHPITGKPKKPTGITLDGQFTGLRGRFDRIDFHPETGRWAI 842

Query: 916 TDYKT-GDNPKKETAQKL-------IDPQLSLE 940
            DYKT G  P+K+  +KL       +D QL L 
Sbjct: 843 LDYKTHGHKPEKKHLKKLPDGSTQWVDLQLPLY 875


>gi|327534743|gb|AEA93577.1| exonuclease RexB [Enterococcus faecalis OG1RF]
          Length = 1196

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 117/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++      +      +  E  L +     N     + L  +   +     +  +L+  
Sbjct: 91   ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMCEGNIEIAELYPF 150

Query: 173  KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              ++          L    L +    +  ++ +    S       +++  +E+L      
Sbjct: 151  LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  +I+G         +L+  +        V   LD   P  + +  +       +   
Sbjct: 206  NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H  Y LA+            K++  +S+ +  + ++I+   L         +    
Sbjct: 264  ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402
              +         + L  A+N +EE   +A  +R  + E     K+  ++T D +     +
Sbjct: 309  PPLSTSDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456
            +       I + +   + +        + SL         +  +   ++  L        
Sbjct: 369  EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQHA 428

Query: 457  --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    +        R  +  E V L      Y     K     R   +         
Sbjct: 429  TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                S   ++    L+    Q +    T           L  S                 
Sbjct: 489  MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +      E+    L SL  + +        +   + +I    ++G            +
Sbjct: 549  QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             +     +R          G+ E ++P+       LS   +  +N    E         +
Sbjct: 608  QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667

Query: 680  YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             I Q      +        L  T  S+++       S + + +        F+  +    
Sbjct: 668  KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727

Query: 733  -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
                        Y     +L    +Q    +    P      +                 
Sbjct: 728  DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787

Query: 771  -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                                     S S ++      Y  ++R  L+L     F      
Sbjct: 788  LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845

Query: 806  TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851
               G  FH  + +  K      +N  E+      ++        L               
Sbjct: 846  AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905

Query: 852  -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897
             I         K+  S+    +  +S +  +   +              ++ +++ G IH
Sbjct: 906  YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963

Query: 898  LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQI 952
            + G  DRID L         + DYK+         A   +  Q+      AL        
Sbjct: 964  VRGKIDRIDQLVIPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDSVQLVG 1023

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKY 981
               K A   Y+ +          +D ++ 
Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052


>gi|229821383|ref|YP_002882909.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
 gi|229567296|gb|ACQ81147.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
          Length = 1085

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 121/994 (12%), Positives = 256/994 (25%), Gaps = 87/994 (8%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS- 104
             + + VPT+R    +R             + ++++   +      +   L     P +  
Sbjct: 77   DLLLLVPTRRQAARVREAVATAVRHTVGRV-LVRTPASLAFSVLRSRATLLGEPAPALLV 135

Query: 105  NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
               +   LA L+          +       P S+P            L D++        
Sbjct: 136  GADQDRILAELLAGHAEGEGRPVP-----WPPSVPREALALRAFRGELRDVLMRAAEAGW 190

Query: 165  KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA---------SSPVGYQIALM 215
              E+L      +    W+  A  L   ++      V  +                 +A  
Sbjct: 191  DGEELARQGRRRRRPEWVACAAVLAEYTEITQLSSVTPDRGAQYDVATIVDEAARALATW 250

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
             A+           +I      +  ATARL+ T+A H +  ++L   D       +    
Sbjct: 251  EADLPGHEPPRWRTVIHDDYQDATLATARLLGTLAGHGSSLLLL--GDPDTSVQTFRGAV 308

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                    +  +       ++  L             + ++S+ +        +      
Sbjct: 309  PSLVARAGAAGSDVGAFGATVHTLRTVWRGTPALRSLVASLSDHLPALGGHERRRAAVAP 368

Query: 336  TSDMRNTDILENKIPNIQK--------CFSDVALIEADNEREEAISIAIALRMSLDENKK 387
             +        E    +  +            V +    +  EEA  +A  LR     +  
Sbjct: 369  AATGVPDGREEPGAWDPGRMRGDVDPLGSDAVEVAVVRSAGEEARLVARRLREVRLRDGV 428

Query: 388  KS---ALITADRNLARRVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNAIFKL-ND 442
            +    A++         ++  L   G+ +   SA +PL        L   L  +      
Sbjct: 429  EWSRMAVVVRRTAQVAPLRRGLRAAGVPVATASAEVPLRDEPAVRPLLRALAMLDAGTCT 488

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
                + L+  PL         L   +  L    + G         L  L+ D        
Sbjct: 489  PEEASWLLCSPLGG--LDAVALRVLRRELRREEIAGGGERASDELLVELLDDPSRAATLP 546

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
              +    +RL+      A    +      T L              ++ D + L     +
Sbjct: 547  PRLRRACARLARTLARGAAAAAEPGASVETLL-------------WALWDASGLASDWRE 593

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                            +    L     +  +     +A       + T+    +T+  + 
Sbjct: 594  RALGSGPTAERADADLDAVIALFRAAEQFADRTPGARA-PDFLTYLETQEFASDTLAARG 652

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD---------LN 673
             ++ ++ +L    +    +D +++ G+ E VWP    ++  L     ++           
Sbjct: 653  RRAESVPVLTASAAAGQEWDVVVVAGVQEDVWPDLRLRDSLLGAQAVAEVAAGRDAASAG 712

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ---------------- 717
               A + +        ++  +R           +  T  S +L+                
Sbjct: 713  PAQARRAVLHDELRMFVSALSRARRRLLLTAVQDGETRPSEFLRLASAGPAPRADDEPDH 772

Query: 718  -------RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
                    L + G          RG+    W  +L  +          P       P + 
Sbjct: 773  RLVRVPPALDLRGLVGVLRAETLRGRAADPWAVRLLASLAAAEVPFAHPDAWAGLAPTST 832

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
                       P +  +   L+   +            G+     +  L+ +        
Sbjct: 833  PQQLWADDDVVPVSPSSLEYLQACALRWLLTTAGGRS-GSALPQEVGTLVHEIAADLPHG 891

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                +   +D  +    LP      W     +     +        +     V++   + 
Sbjct: 892  GAAELLAELDRRWPALGLPEG----WAARRTRAGAEEMVRLLADYLAGVPGHVDVEVPVD 947

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            +      + G  DR++  + G V I D KTG         +   PQL     A       
Sbjct: 948  VVVDRARIRGRVDRVEHTQDG-VRIADLKTGATAVTAQEAEH-HPQLGA-YQAAARAGAF 1004

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
                   A L Y+    +               D
Sbjct: 1005 DGAAADGARLVYVGAGGRSAKHRQQAAPPPGDED 1038


>gi|257884721|ref|ZP_05664374.1| exonuclease RexB [Enterococcus faecium 1,231,501]
 gi|257820559|gb|EEV47707.1| exonuclease RexB [Enterococcus faecium 1,231,501]
          Length = 1175

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 112/929 (12%), Positives = 246/929 (26%), Gaps = 137/929 (14%)

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                + L ++   + T   + EDL  L  +        L    LK+    +   L +   
Sbjct: 122  RGFIRQLQELYSELRTGNIQPEDLMLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTQRAL 181

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
            ++        +   A ++       +  I++G +       +L+  +       + L  L
Sbjct: 182  TNE-----DALSILANYMQTQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-L 235

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            D      +   +T            + +  +  +  L+D      E  +           
Sbjct: 236  DRPYTADLPEVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP---------- 283

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                   + L    +    T   +    +       + L EA+N  EE   +A+ +R  +
Sbjct: 284  -------TELQLLQTMWEETSSQKKAAVHKLGGQEHLHLWEAENPTEEVRQLAVEIRRLV 336

Query: 383  ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
               +   +   ++T + +L   +         I   I     +        + SL     
Sbjct: 337  SEENYRYRDIQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDR 396

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSL 491
                   I    K  L      E  L   K   +    +           +Y        
Sbjct: 397  YSYRLSDIMRFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTRE 456

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI- 550
               +                L E+   +  L    +   +  +   KT + +        
Sbjct: 457  KDWQFVAYDFEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKESKTGQEAANVFYQFL 516

Query: 551  --SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
              S   +  +          + +      E+    L  L  +          +   + +I
Sbjct: 517  IQSGVQQQLLFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYAVIYGESAFDWSLFQEI 575

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            IT  ++  +          + I      R          GLN+ V+P        LS   
Sbjct: 576  ITSGLENLSYGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEE 635

Query: 669  QSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWL 716
            +  LN    +                        +GT  L  + +   + +     S +L
Sbjct: 636  REVLNQALPDGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYL 695

Query: 717  QRLLVLG------------------------------------GTDFFDNLKKRGQ---- 736
            +R+                                          D    + K  Q    
Sbjct: 696  RRITEYLSVPVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKE 755

Query: 737  -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYAR 788
                  + ++  ++  + +  +     P    E         S S ++   N  Y  + +
Sbjct: 756  LVLNSSWRNFALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQ 815

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDS 841
              LKL               G  +H  +    K         +N +  +     ++++  
Sbjct: 816  FGLKLKER--TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDTQRRDFTEKVLQE 873

Query: 842  HFEK---ENLPPHIDIIW-RHLFHKISH--SFLEHEEKIQSSIEKIFVNIPAK------- 888
             F +   E L     + + R+   +     ++   ++   + +  +   I          
Sbjct: 874  VFGELRFEILDSSARMNYIRYQLGQTIQKVAWALQKQSKNTGMHPLQTEILFGQIAGAKG 933

Query: 889  ---MAIE---SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLS 938
               + +       +H+ G  DRID+        + + DYK +G +     A   +  QL 
Sbjct: 934  ITGLELPLSNGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLL 993

Query: 939  LEA--AALKAGSFSQIDCRKVANLFYIRL 965
                 A + A   +     K A  +Y+ +
Sbjct: 994  TYLDVALMDAVRLTGKAAVKPAGSYYLHV 1022


>gi|296122608|ref|YP_003630386.1| ATP-dependent nuclease subunit B-like protein [Planctomyces
            limnophilus DSM 3776]
 gi|296014948|gb|ADG68187.1| ATP-dependent nuclease subunit B-like protein [Planctomyces
            limnophilus DSM 3776]
          Length = 1113

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 123/1096 (11%), Positives = 277/1096 (25%), Gaps = 185/1096 (16%)

Query: 27   NGTLVENFRYDPLNPLLLASVTI-----YVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
                    RY       LA   +       P+ R   +     +E+   K    P + + 
Sbjct: 11   ARHQEALARYASHLGQGLADGQLGTGLWLTPSARTHSKTYQALLELLKGKIA-APNLHTF 69

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                E   +     +     P++   + L L+  I                        +
Sbjct: 70   ESFSEIILSHGSAAAT----PITPSTQFLLLSHAIQTVYQ-----------RGDCEEFSA 114

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                  L K ++D I  ++ +E   E+      ++ G           I  + +   L  
Sbjct: 115  VIETRGLTKIVSDWIAELKRDETWPEEFLKSCQQQKGGATGKDLALAAIYHE-YQALLNA 173

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTK--GPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                   G       A ++           ++  G          L+   A      ++ 
Sbjct: 174  RGWYDQEGRSWLARAAVSQGARAPFDQVRLVVCDGFVDFTWIQYELLEQFARWNADIVIT 233

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
                            E ++   +S            A     L+I +  +K L  +   
Sbjct: 234  LP-------------DEFASQRNTSFDRSE-----LFAIPRRTLEILKSRIKPLQEIRVH 275

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                +        P     +        +I +     +    I A     E  +++  ++
Sbjct: 276  SISTNPDHGAV--PTGIEQLARNLFGNPRIVSRCSTAAGFDAIAAGGPHRELEAVSHQIK 333

Query: 380  MSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                     ++   ++    + A R        GI         L +      +  L+  
Sbjct: 334  KWRSSGFLAEEIVVVVRGLASEASRWLDHFELAGIPAYAPQASSLESCPVVRWMAQLVKL 393

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                     +  +V     +                          +     ++L+    
Sbjct: 394  ELNDWTSHDLRLVVSSTFFRPAQ-----------------------FPSKAKRALLAWLA 430

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTK 555
             +  ++  +   ++R    D        +     +   L T          + S   W  
Sbjct: 431  KSPASSRKILSLKARERAADPSALTTEKEINHTLVSQGLETLLRVTEKLSTSHSFEGWID 490

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII------ETGSCIKANAIEWIDII 609
            L    +            +     + + L  +  ++       +  S   +    W ++ 
Sbjct: 491  LWAAIISQWTPFLPDSSNDRADRADWELLQRILRRVSRCRGTWQEPSERLSLQAWWSEVE 550

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
              L    ++ P         I       L +   +++ G  E  +P     N   S   +
Sbjct: 551  ACLSVERSLPPAPSPGMISLIDPAQARFLDSARCVVIVGATEQAYPAADHTNCLYSHAER 610

Query: 670  SDL-----NLKTAEKYIGQAAHDFEMA--NGTRHLIYTR-SLRENNIPTIASRWLQRLLV 721
              L      L   E +  +    F       T +L+ T  ++         S ++     
Sbjct: 611  QSLIAAGLRLVREEDHSSEETLLFWQLVSMATENLLITYPAINAKGQELFPSPFVLAACD 670

Query: 722  LGG---------------TDFFDNLKKRGQCYLD-----------WTRKLDYTTKQPHYK 755
            L                  +  +   +R    +            W   L  TT+   Y+
Sbjct: 671  LFTKDVQLPRHVGSIHVMPEREEIHTRRDLRIVAFEQAMTGHAGWWKTGLLDTTEGQAYR 730

Query: 756  RPKPFPPLEAQPRT-----------------------------YSFSEIKQLINDPYAVY 786
                  P+                                   +S + ++   N P+  +
Sbjct: 731  NMARGLPMLQARYRTEGFTEYEGMLNEPALREEFARQYGPEHQFSVTRLELYANCPFRFW 790

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
               +L L      +   +   RGT  H+ +  L+     +        + +I   H   E
Sbjct: 791  IEEVLGLAPRETKQLSTNYLMRGTALHSALASLLGS--GRLALADEAELSRIFAEHVAVE 848

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI--------------------- 885
                           ++    +    +  ++ ++ ++                       
Sbjct: 849  MQRRAKGSPLAEAMARLDSQIVSAWSEQFAASQREYLETMVSAWGGMPETTLPEVAFGQV 908

Query: 886  -------------PAKMAIESIGIHLTGFADRID--LLKSGF--VDITDYKTGDNP---- 924
                           +++     + L G  DRID   L +G     I DYK+G       
Sbjct: 909  YDDHGELIHGPYPALEISRGGHLVRLGGKIDRIDAHKLPTGEQFFSIIDYKSGGASQYRF 968

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
             ++  Q+ +  QL +   A+K    +  D  +     +  L+++  +  +   +K    +
Sbjct: 969  DEKAVQQGLSLQLVVYLLAVKRLRMAG-DDAEAWQAGFWGLRKEGLVAGLKAGRKSKEWN 1027

Query: 985  ELSEKSLKNLIEIVTL 1000
             L E S+  L E V  
Sbjct: 1028 RLDEDSVHRLEEAVQQ 1043


>gi|324993969|gb|EGC25888.1| exonuclease RexB [Streptococcus sanguinis SK405]
 gi|324994712|gb|EGC26625.1| exonuclease RexB [Streptococcus sanguinis SK678]
 gi|327463227|gb|EGF09548.1| exonuclease RexB [Streptococcus sanguinis SK1]
 gi|327489959|gb|EGF21748.1| exonuclease RexB [Streptococcus sanguinis SK1058]
          Length = 1093

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 119/923 (12%), Positives = 256/923 (27%), Gaps = 137/923 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L       T  L + +  S
Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       + +   +     ++I G T        L+  +     G  ++ G   +
Sbjct: 166 SSQIAAFAHHILSGDTDEELKNLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +              +
Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISHAEAEDAFGRISKI 273

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
           + S+      T  +  TD             S + +    N++EE   +A ++R  + + 
Sbjct: 274 LESRYDFSESTVSLSETDR------------SQLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 ARYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       G     ++   +  +          
Sbjct: 382 LEDLLNLLKTGL----------------------YGGLTQEELDHFEQYLRFADIKGSAK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561
                  +   + D +    +   ++  +      ++   +      +           L
Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFFQAARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +   E ++      EE  K  S +  +  +  +  K    +++ ++   +     +  
Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN  T  +  
Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598

Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721
            Q A         +         T+ L+ +     N +    S +L  L           
Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658

Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758
                                 L   +         Q +     R L           P+
Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718

Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               + QP   S S + +     YA + + +L+L     +   P
Sbjct: 719 ISKELKTESLQPETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861
           D    G   H I  ++++   + +         +      E E++          R L  
Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLARAMEETSREAEFESIYSESGQTRFARQLLL 836

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913
             + +         + IE I             + +E    + ++G  DRID L K+  +
Sbjct: 837 DTARATGRV-LAHPTGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKTESL 895

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+GD     E     ++ QL    AA++  +  Q D        Y+++      D
Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
            I   K   +  +   +S+K L 
Sbjct: 950 PIVALKDTKTLADAVNQSMKPLQ 972


>gi|329894921|ref|ZP_08270720.1| RecB family exonuclease [gamma proteobacterium IMCC3088]
 gi|328922650|gb|EGG29985.1| RecB family exonuclease [gamma proteobacterium IMCC3088]
          Length = 863

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 99/732 (13%), Positives = 219/732 (29%), Gaps = 92/732 (12%)

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD-EN 385
            ++                + + +P         ++    +  E+   +A   +   + + 
Sbjct: 184  LTPLQRAACERVSERVRFVRSVLPPSIDAAKT-SVCAFQDADEQLRWVAAWAKAHYESKQ 242

Query: 386  KKKSALITADRNLAR-RVKLELTRF---------GINIDISAGIPLSTTLHSSILTSLLN 435
             ++  ++  D N  R R++  L +           + ++ SAG+  S         S+L 
Sbjct: 243  GERLGIVVPDLNTHRQRLEYHLRQAFGLEHSDYTSLPVNFSAGMAASQVPLIDAAASVLK 302

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
                      +  L + P              + AL  +A     +S  ++ L+ L  + 
Sbjct: 303  LSLGRLRPPELLALARSPYLSLCVSHHEFRALREALYDLAPAKLGHSELLLILEQLSKEV 362

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                                                + L  +         + +  +  +
Sbjct: 363  PD----------------------------------SALSRWLLTSRVDSKDATCLEHVR 388

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                 LQ       R L ++ ++       +L   +   G   K  A + + ++   +  
Sbjct: 389  HWEQSLQAAGWPGKRGLDSVEYQAFKLWQRTLRDLVSWDGLRPKWAASDALTLLESSLTN 448

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
             +V         + +LGTLE+  L FD LI+     G +P+  A +PFL + +Q    + 
Sbjct: 449  -SVFQPETPDQNIQVLGTLEAAGLCFDRLIVTDAVAGHFPERIALSPFLPKHLQRQYKMP 507

Query: 676  TAEKYIGQA---AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             A++        +    MA  ++ L ++     +      +  L +L          +  
Sbjct: 508  RADEDQEYQLAKSLLEGMAARSQSLYFSYVALADESKVAVTPLLSQLEQSFPVVAELDRP 567

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                 +                    P   L+          +      P   Y+R  L 
Sbjct: 568  VIPGVWSMMLES-------RGLTLTTPQGDLKGGAYRLGMHAL-----CPMQAYSRYRLD 615

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIK---KRINKNTPEINHLMKQIIDS--HFEKEN 847
            +      +      ++G + H  +  L +   +    N  +I   + + + S     +  
Sbjct: 616  IPEEASLEDGLSAKEQGLVLHKSMELLWRGKNRLEQVNPADIAPAVAEALKSISRARQVL 675

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL 907
            LP       +         +LE E +         +    K  +   G   +   DR+D 
Sbjct: 676  LPDLALEAEQLRLETAIRLWLELESQRVPFNV---LEHERKAELNLKGWTFSFRLDRLDA 732

Query: 908  LKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
            L   +  I DYK+           +L   QL L A AL            V  + Y ++ 
Sbjct: 733  LADDYSVIIDYKSTAPSTSTWFGGRLEQAQLPLYALAL---------GEHVKGIAYGQIS 783

Query: 967  QKFKIDCITNDKK--------KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018
                   +   ++          +  E      + L++++  L+ GE    + +  S ++
Sbjct: 784  STKPAKLVGAGQQGFGKGVKVIENWGEQKTLWERALLDLIDELEVGE----ASVLPSARA 839

Query: 1019 NIQSEYDHLARV 1030
                ++  + RV
Sbjct: 840  CRYCDFAAICRV 851


>gi|293572572|ref|ZP_06683546.1| exonuclease RexB [Enterococcus faecium E980]
 gi|291607355|gb|EFF36703.1| exonuclease RexB [Enterococcus faecium E980]
          Length = 1175

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 119/965 (12%), Positives = 249/965 (25%), Gaps = 150/965 (15%)

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            + L +++     +L     ++                   + L ++   +     + EDL
Sbjct: 99   MILRQILEKHEEELTIFRGEINKR-------------GFIRQLQELYSELRIGNIQPEDL 145

Query: 170  HAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              L  +        L    LK+    +   L E   S+        +   A ++      
Sbjct: 146  MLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTERALSNE-----DALAILANYMQTQDFT 200

Query: 229  PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +  I++G +       +L+  +       + L  LD      +   +T           
Sbjct: 201  NVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-LDRPYTADLPEVLTLFHETG----- 254

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                       KL   L     + K    V      ++   +   L         T   +
Sbjct: 255  -----------KLYFRLFQSARERKVPILVDRFAPEQNRPTALQLLQTM---WEETSSQK 300

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVK 403
                +       + L EA+N  EE   +A+ +R  +   +   +   ++T + +L   + 
Sbjct: 301  KATVHKLGEQEALHLWEAENPTEEVRQLAVEIRRLVSEENYRYRDIQVLTKNMSLYGNIL 360

Query: 404  L-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                    I   I     +        + SL            I    K  L      E 
Sbjct: 361  RPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDRYSYRLSDIMRFFKTELFLSMETET 420

Query: 463  YLSRAKNALELVALR-------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             L   K   +    +           +Y           +                L E+
Sbjct: 421  ELDEWKQERDEFRKKLDITENVALAYNYQGTYWTREKDWQFVAYDFEAEQIEDVQYLEEQ 480

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI---SDWTKLTVTCLQNVCLDEHRKL 572
               +  L    +      +   KT + +          S   +  +          + + 
Sbjct: 481  SNTIRRLFQKAVPAFFKKIKKSKTGQAAANVFYQFLIQSGVQQQLLFWRNQEVDRGNLEA 540

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
                 E+    L  L  + +        +   + +IIT  ++  +          + I  
Sbjct: 541  AR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEIITSGLENLSYGKIPTAIDQVRINR 599

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-------KYIGQAA 685
                R          GLN+ V+P        LS   +  LN    +            + 
Sbjct: 600  LELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEEREVLNQALPDGQFLFDPSKESISF 659

Query: 686  HDFEMAN----GTRHLIYTRSLR-ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
              F+       GT  L  + +   + +     S +L+R+                +   D
Sbjct: 660  EPFQAYLVFISGTDRLYLSYAQSYDTDGSLKMSPYLRRITEYLSVPVERKEHLTIESDPD 719

Query: 741  ----------------WTRKLDYTTKQP-------------------------------H 753
                            +   LD     P                                
Sbjct: 720  CYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKELVLNSSWRNFALQIFESQEHLNVP 779

Query: 754  YKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
               P+        +    S S ++   N  Y  + +  LKL               G  +
Sbjct: 780  VSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQFGLKLKER--TVYGLTPAATGDFY 837

Query: 813  HNIITELIK-------KRINKNTPEINHLMKQIIDSHFEK---ENLPPHIDIIW-RHLFH 861
            H  +    K         +N    +     ++++   F +   E L     + + R+   
Sbjct: 838  HESLDRFFKLLFSNQLSLVNMTDAQRKDFTEKVLQEVFGELRFEILDSSARMNYIRYQLG 897

Query: 862  KISH--SFLEHEEKIQSSIEKIFVNIPAK----------MAIE---SIGIHLTGFADRID 906
            +     ++  H++   + +  +   I             + +       +H+ G  DRID
Sbjct: 898  QTIQKVAWALHKQSKNTGMHPLQTEILFGQIAGAKGITGLELPLSNGGKLHVRGKIDRID 957

Query: 907  LLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLSLEA--AALKAGSFSQIDCRKVANL 960
            +        + + DYK +G +     A   +  QL      A + A   +     K A  
Sbjct: 958  VASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLLTYLDVALMDAVRLTGKAAVKPAGS 1017

Query: 961  FYIRL 965
            +Y+ +
Sbjct: 1018 YYLHV 1022


>gi|50913957|ref|YP_059929.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10394]
 gi|81372202|sp|Q5XCW7|ADDB_STRP6 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|50903031|gb|AAT86746.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10394]
          Length = 1071

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 134/986 (13%), Positives = 276/986 (27%), Gaps = 140/986 (14%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P        S        + L ++   ++  +
Sbjct: 75   SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                DL  L             D +KI     T  + +           A          
Sbjct: 130  LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            + +K  ++I G +        L+S + N+     V+ G   ++    +     K     +
Sbjct: 184  QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQ--EVITG--SYVSQKAYQKSFIKGNIYEA 239

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            S        Q    K +               V    + R   + ++       D +   
Sbjct: 240  SLHFLQDLAQKYHIKPV---------FATSNQVFKPAFSRLTQLFEATHDFSQVDWQLQK 290

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
                            +L +  +++EE   +A ++R  L E  +   ++    ++     
Sbjct: 291  ND----------LDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340

Query: 404  LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                   +F I   +    P++       + SL  +         I  ++K  L      
Sbjct: 341  QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                      D+                       ++   +   
Sbjct: 401  -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577
              L +     + PL     ++       S+ D   L    +   +N+      +L     
Sbjct: 436  DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE  K  + + +         K    + + +I   +     +        + I      +
Sbjct: 494  EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686
              +   +   GL +  +PK    +  LS   ++ +N     ++   A           A 
Sbjct: 554  PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725
                A  T+ L+ +     N      S +L+ L+  G                       
Sbjct: 614  SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKA 672

Query: 726  -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760
                       D  +   +    +    R L    ++   + P                 
Sbjct: 673  LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKSLSKEVIE 732

Query: 761  -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                +  P   S + +    N+ Y  + + +L L+        PD    G   H +   L
Sbjct: 733  VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790

Query: 820  IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +K    +               +S F++             +   I  S      ++  +
Sbjct: 791  MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936
            I+ I       + +    I + G  DRID L  G + + DYK+  N     T    + PQ
Sbjct: 850  IKVIDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGVVDYKSSANQFDIGTFYNGLSPQ 908

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L    AALK  +   I+  ++    Y+ L Q  K+D +T  +   +  E   K+L     
Sbjct: 909  LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQS 1022
               +    E+  +S      K+ + S
Sbjct: 962  YKGIFSEVEKEHLSTGAYQTKNALYS 987


>gi|118472301|ref|YP_886308.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118173588|gb|ABK74484.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 1087

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 131/1080 (12%), Positives = 275/1080 (25%), Gaps = 136/1080 (12%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57
            +++  V    P          A    T+     +   N     + V     T++A     
Sbjct: 21   DEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGFATPSQVLGLTFTRKAAGQLL 80

Query: 58   QELRSEFIEITGKKSTILPIIKSLGDVV----EEKFTADLLLSYNLNPPVSNIQRLLELA 113
            + +R+    + G  + + P   +  +         F   LL  + L  PV    RLL   
Sbjct: 81   RRVRTRLARLAG--AGLAPGSGASDESATVSTYHAFAGTLLREHGLLLPVEPDTRLLSET 138

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIETEEKKWEDLH 170
             L  +  + +      L  ++  +     A  + L+  LA+ +   D +     + E L 
Sbjct: 139  ELWQLAYDVVCAHPGHL--DTEKTPAAVTAMVLRLSGALAEHLVDTDQLRDTHVELERLV 196

Query: 171  ALKNE----KYGMWWLLAADFLK---------IASKYWTERLVELNASSPVGYQIALMRA 217
                     +           L                 +R+             A  R 
Sbjct: 197  HTLPAGPYQRDRGPSQWLLRMLATQTERTELVPLIDALHQRMRAEKVMDFGMQMAAAARL 256

Query: 218  -----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAI 270
                 +    ++     +++     +  A    +S++      +G  +    D       
Sbjct: 257  AARFPQVGEQLRQRFRVVLLDEYQDTGHAQRIALSSLFGGGADDGLALTAVGDPIQSIYG 316

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
            W   +  +    +++  YS        +L          +     VS E   RS+ +   
Sbjct: 317  WRGASATNLPRFTTDFPYSDGTPAPTLELRTSWRNPPSTLHVANAVSEEARRRSVAVRAL 376

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA 390
               PD         L N +   +   +D              +               +A
Sbjct: 377  RPRPDAEPGTIRCALLNNVAAERDWVADHLARAYHGAIGRGEAA------------PTAA 424

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            ++      A  +   LT  G+ +++     L      + L ++L  I       A+  ++
Sbjct: 425  VLVRRNADAAPMAEALTARGVPVEVVGVAGLLAVPEVADLVAMLRLIADPTAGSAVMRIL 484

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
              P  +FG  +      + A+EL      +     +  ++      A   +    P    
Sbjct: 485  TGPRWRFGARDIAAL-WRRAVELDDRPKGELGTADIVAQAAPDADTACVADAICDPGDAE 543

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL--QNVCLDE 568
            R S    E  V L   +      L               + +        L         
Sbjct: 544  RYSPAGYERIVALGRELTMLRAHLG------------HPLPELVAEVRRVLGLDAEARAA 591

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                      E     S L S          +  + ++D    + +G            +
Sbjct: 592  RPVAAGWAGTENLDRFSDLVSDFAGHAGASVSALLAYLDAAVEVENGLAPAELTVSHDRV 651

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL-------------- 674
             IL    ++ L +  + +  L+  V+P  T    +L+        L              
Sbjct: 652  QILTVHAAKGLEWQVVAVPHLSARVFPSTTQARTWLTDASDLPPLLRGDRATESEIGVPV 711

Query: 675  ----------------------KTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIP 709
                                      +   +    +         +           + P
Sbjct: 712  LDTSDIYDRKILSDKISDHKKSLDQRRVDEERRLLYVAITRAEDTLLLSGHHWGATESKP 771

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK---------QPHYKRPKPF 760
               S +L  L  +               +         T            P        
Sbjct: 772  RGPSEFLCELKTILEEATAAGTPCGEIEHWAPDPAPGETNPLRDQVVEALWPPVASADDH 831

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
                AQ    + +       D     A     L       +  D    G L  + + EL 
Sbjct: 832  VHRGAQLVAAAMAGEVSAEADQEGWAADVDALLAERERPPQQEDTELPGQLSVSTLVELS 891

Query: 821  KKRINKNTP---------EINHLMKQIIDSHFEKENLPPHIDIIW-----------RHLF 860
            +      T          + + L+        ++      +  +            R + 
Sbjct: 892  RDPKAALTRLRRRLPQRPDPHALLGTTFHEWVQRYFHAERLFDLDDLPGAVDSDSGRAVE 951

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
              ++       +   ++   + V +P  M +      + G  D +     G   + D+KT
Sbjct: 952  ESLAELQDAFVKSPWAARTPVEVEVPFDMVLGET--VVRGRIDAVFAEPDGTTMVLDWKT 1009

Query: 921  GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF-YIRLKQKFKIDCITNDKK 979
            GD P+   A++    QL++   A    +        V   F Y+R  Q    + +   ++
Sbjct: 1010 GDPPETPEAKEHAAVQLAVYRLAWA--AMRGCPPESVRAAFHYVRSGQTVIPETLPGAEE 1067


>gi|325570416|ref|ZP_08146193.1| exonuclease RexB [Enterococcus casseliflavus ATCC 12755]
 gi|325156626|gb|EGC68803.1| exonuclease RexB [Enterococcus casseliflavus ATCC 12755]
          Length = 1212

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 112/947 (11%), Positives = 229/947 (24%), Gaps = 143/947 (15%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYG-MWWLLAADFLKIASKYWTERLVELNAS 205
               + L      + T     EDL A                 L I  + + + L+E    
Sbjct: 128  GFIQQLLAFYQEMHTSRLGIEDLLAGGAAPSATQDEEKKYSELAIIFQRFEQELLERALQ 187

Query: 206  ------------------SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
                                                  +    II+G +       +L+ 
Sbjct: 188  VEQPITLLTCFLEGSLLGDSSVDHAMPTTVSLNKAPDLSHALFIISGFSAFSTQEQQLIQ 247

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +  ++   LD   P        E  T +        T+ Q  L        +  
Sbjct: 248  VLMKRSHV-VIDLILDRGYPQ-------EMPTPLNLFYEAGRTYYQ--LISFARDNQVNI 297

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
               ++L             I +++   +T         +            +A+ +  N 
Sbjct: 298  YLDQKLSVNQEVDKEDEGSIPQAYKEVETF--WRQTQSQANYHQQTSVKDFLAVWKVGNP 355

Query: 368  REEAISIAIALRMSLDENKKKSALITADRNL--------ARRVKLELTRFGINIDISAGI 419
             EE   IA ++R  + + K+   L   D  L         + +    T F I   I    
Sbjct: 356  EEEIRQIAASIRGMMSDKKRYPTLRYRDIQLLIAEPEVYHQYIPKIFTEFEIPFYIDEEQ 415

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL---------AKFGFPEKYLSRAKNA 470
             ++       L +             I  L++  L         A +        +  + 
Sbjct: 416  MMAQHPLVEFLNAFFACQSYGFRLNDILRLLRTELYLPAAYRSEADWLVGRDQFRKLVDI 475

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
             E  AL  +         +   L      +         +  + + +      V   L  
Sbjct: 476  TENKALAHDFQGASWTRNEDWELIEYLQSEEEQTDKVDLTAYTNQLRRAFKQDVADTLDW 535

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +T   T +         L  +   +                      E+  + L  L  +
Sbjct: 536  LTAARTNRDAVELLYRFLLNAGVEQQLRHWRDQAIQQGKLDQAR-NHEQAWQALMDLLDE 594

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
                      +   + D++   ++  T          + I     +R          GLN
Sbjct: 595  YATIYGDEPFDFALFEDVLLTGLENVTFGKIPTAIDQVNINRLDLARPKQAKITFAPGLN 654

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIY 699
            E   P+       L+   +   N     +   +            A    + + T HL  
Sbjct: 655  ETALPRKMENKTLLTNEERQHFNQLFNGEKYLRDTVVEGSVKEPFAFYSVLLSATEHLSL 714

Query: 700  TRSLRENNIPTI-ASRWLQR--------LLVLGGTDFFDNLKKR---------------- 734
            + ++  +    I  S +L R        L   G      + +                  
Sbjct: 715  SYAVNFDTQQNIKMSPYLDRVVKHLDVPLQERGILALVSDPRDYVGSYRGLIYQINNLSQ 774

Query: 735  ---------GQCYLDWTRKLDYTTKQPHYKRP--------KPFPPLEAQPRTY------- 770
                      + +    + L  +       +          P P  +AQ           
Sbjct: 775  QAQKNKENLPRVWEQLKQALLRSEWTDLAAQVFESQTHQNIPIPLSQAQAAALYGPSIYS 834

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN--- 827
            S S+++      Y  +    L+L          +    G  FH+ +   +K  I +N   
Sbjct: 835  SISQMETFYQCEYKYFVSYGLRLKERE--VYGLNPAMTGEFFHDALDRFVKVLIAENISL 892

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS----------S 877
            T        Q ++   ++        ++            L    +  +           
Sbjct: 893  TQLTADQRVQFVEVVLQEIFGESRYRLLTSSARMNFIRYQLGKTIQRVAWALAKQGQKMH 952

Query: 878  IEKIFVNIPA----------KMAIE---SIGIHLTGFADRID--LLKSGFVD-ITDYKTG 921
                   +             + +       +H+ G  DR+D    +      + DYK+ 
Sbjct: 953  FSPEKTEVLFGQIAGSNGINGIELPLSSGGKLHVRGKIDRVDTAKTEEEQWLSVVDYKSS 1012

Query: 922  DNP-KKETAQKLIDPQLSLEA--AALKAGSFSQIDCRKVANLFYIRL 965
                    A   +  QL      A   A         + A  +Y+ +
Sbjct: 1013 SRDFDLSEAYYGLAMQLITYLDVALTDAVQLVGSPKVRPAGAYYLHV 1059


>gi|332362057|gb|EGJ39859.1| exonuclease RexB [Streptococcus sanguinis SK49]
          Length = 1093

 Score =  158 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 120/923 (13%), Positives = 252/923 (27%), Gaps = 137/923 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L       T  L + +  S
Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       A +   +     ++I G T        L+  +     G  ++ G   +
Sbjct: 166 SSQIAAFAQHILAGDTDEELENLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +               
Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISH------------A 261

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
               +F           D  E  +   +   S + +    N++EE   +A ++R  + + 
Sbjct: 262 EAEDAFGRISKVLESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       G+    ++   +  +          
Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDHFEQYLRFADIKGAGK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561
                  +   + D +    +   ++  +      ++   +      +           L
Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQGFFKSRSQTASGLLAKFTEFVQAARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +   E ++      EE  K  S +  +  +  +  K    +++ +I   +     +  
Sbjct: 480 TTLLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALILSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN  T  +  
Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNEATDSQAE 598

Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721
            Q A         H         T+ L+ +     N +    S +L  L           
Sbjct: 599 LQIASSENLKKNRHTALSLMNSATKELVLSAPALVNEVEDSVSTYLLELTAAPLSLPIIV 658

Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758
                                 L   +         Q +     R L           P 
Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLSAEGISIPH 718

Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               + QP   S S + +     YA + + +L+L     +   P
Sbjct: 719 ISQELKTESLKPETLKALYPQDQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861
           D    G   H I  ++++   + +         +      E E++          R L  
Sbjct: 777 DARSHGIFLHRIFEKVLQDGSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLL 836

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK-------MAIESIGIHLTGFADRIDLL-KSGFV 913
             + +         + IE I              +      + ++G  DRID L K+  +
Sbjct: 837 DTARAT-GRVLAHPTGIETIGEETGFGSASKPFLILENGRAVTVSGKVDRIDRLTKTESL 895

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+GD     E     ++ QL    AA++  +  Q D        Y+++      D
Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
            I   K   +  +   +S+K L 
Sbjct: 950 PIVALKDTKTLADAVNQSVKPLQ 972


>gi|270292731|ref|ZP_06198942.1| exonuclease RexB [Streptococcus sp. M143]
 gi|270278710|gb|EFA24556.1| exonuclease RexB [Streptococcus sp. M143]
          Length = 1091

 Score =  158 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 125/974 (12%), Positives = 263/974 (27%), Gaps = 154/974 (15%)

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
           P  +++  +              P  ++                     + L ++   + 
Sbjct: 76  PAKTSLDDIGLGMAFYKCLAELDPKDLRVYGA---------IKQDPQFIQQLVELYHEMT 126

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA- 219
           T +  + DL +L +E            L +  +  T  L +   +        L+ A   
Sbjct: 127 TAQMNFLDLESLTDEDKRAD-------LLLVFEKVTAYLNQSQLA-QGSQLSHLIEAIEN 178

Query: 220 -EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
            +     ++  ++I G T       R++  +     G  ++ G                S
Sbjct: 179 DKVSSDFSQIALVIDGFTRFSAEEERVVDLLHR--KGVEIVIGA-------------YAS 223

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
               +S  +     Q S+ + L  L  K            +   ++ V   SF       
Sbjct: 224 KKAYTSPFSEGNLYQASV-EFLHHLGAK-------YQTPAQDRSQTHVKIDSFDKASRLL 275

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALIT 393
             + D  E  +   +K   ++ +     ++EE   +A ++R  L +N          L+ 
Sbjct: 276 ESSYDFSELALDVYEKDRENLQIWSCLTQKEELELVARSIRQKLHDNPDLSYKNFRILLG 335

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              +    +K    ++ I   +     ++    +  + S+L           +  L++  
Sbjct: 336 DVASYQLSLKTIFDQYQIPFYLGRSEAMTHHPLTQFVESILRLKRYRFRQEDLINLLRTG 395

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
           L                        + +  DI   +  +                +S   
Sbjct: 396 L----------------------YTDLSQADIDAFEQYLRYLGINGLPAFQQTFTKSHHG 433

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           + D E    +   +L  +  L   +  K         S   + +VT            L 
Sbjct: 434 KFDLERLNAIRLRVLAPLETLFASRKQKTENLLQKWNSFLKEGSVTKQLQELTATMEALE 493

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                E  KT   +  +     +  + +  +++ ++   +     +      +T+ +   
Sbjct: 494 QERQAEVWKTFCHVLEQFATVFAGSQVSLEDFLSLLHSGMSLSQYRTIPATVNTVLVQSY 553

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA-------H 686
                L  D +   GL +   PK       L+   +  LN  T E      A       +
Sbjct: 554 DLISPLTADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKN 613

Query: 687 DFEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ------ 736
            + M        + L+ +     N   +  S +LQ L+  G       +  +G       
Sbjct: 614 RYTMLSLVNAARKQLVLSAPSLLNENESKESAYLQELVSFGFNRTEKKIHHKGMSKEDMG 673

Query: 737 ----------CYLDWTRK--------------------LDYTTKQPHYKRPKP------- 759
                      Y                          LD            P       
Sbjct: 674 SYHSLLSSLVAYHQQAASSENEQDVTFVKVLARVMGKKLDQKGLTNPALPTSPSSKPLEK 733

Query: 760 ----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                     +    S S + +   + Y+ + R +L L      +  PD    G   H I
Sbjct: 734 ETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EELRLRPDARSHGNFLHRI 791

Query: 816 ITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
               +K        +      +    +  FE            + +   ++ +   H  +
Sbjct: 792 FERALKLPAENPFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEVLLDVARTT-GHILR 850

Query: 874 IQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPK 925
              +IE I             + ++    +H+ G  DRID L   G + + DYK+     
Sbjct: 851 HNPAIETIQEEATFGGKDQAFIQLDNGRSVHVRGKVDRIDRLKADGAIGVVDYKS----S 906

Query: 926 KETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               Q       ++ QL    AALK                Y+ + +  +          
Sbjct: 907 LTQFQFPHFFNGLNSQLPTYLAALKKEGEQNF-----FGAMYLEMAEPVQSLLAVKSLAG 961

Query: 981 YSADELSEKSLKNL 994
             A+       + L
Sbjct: 962 AVAEASKSMKYQGL 975


>gi|307704789|ref|ZP_07641685.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK597]
 gi|307621698|gb|EFO00739.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK597]
          Length = 1094

 Score =  158 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 124/980 (12%), Positives = 254/980 (25%), Gaps = 163/980 (16%)

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
           P  +++  +              P  ++                     + L ++   + 
Sbjct: 76  PAKTSLDDIGLGMAFYKCLAELDPQDLRVYGA---------IKQDPQFIQQLIELYHEMT 126

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
             +  + DL +L +E             +  + Y  +        +       L+ A   
Sbjct: 127 KAQMSFLDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----GQLAQGSQLSQLIEAIEN 178

Query: 221 HLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
           + +      I  +I G T       R++  +     G  ++ G                S
Sbjct: 179 NKVSSDFNQIALVIDGFTRFSAEEERIVDLLHG--KGVEIVIGA-------------YAS 223

Query: 279 TNITSSNTTYSTHPQYS---LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
               +S        Q S   L  L        +D  +     +     S ++  S+    
Sbjct: 224 KKAYTSPFAEGNLYQASVEFLHHLAAKYQTPAQDYSQSHEKMDSFDKASRLLEASY---- 279

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSAL 391
                  D  E  +    +   ++ +     ++EE   +A ++R  L EN     K   +
Sbjct: 280 -------DFSELTLDVDDEDRENLQIWSCLTQKEELELVARSIRQKLHENSNLSYKHFRI 332

Query: 392 ITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           +  D    R        ++ I   +     ++    +  + S+L           +  L+
Sbjct: 333 LLGDVASYRLSLKTIFDQYQIPFYLGKSESMAHHPLTQFVESVLALKRYRFRQEDLINLL 392

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
           +  L                        + +  DI   +  +                +S
Sbjct: 393 RTGL----------------------YSDLSQADIDAFEQYIRYLGINGLPAFQQTFTKS 430

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
              + + E    L   IL  +  L   +  K         S   +  VT           
Sbjct: 431 HHGKFNLERLNALRLRILTPLETLFASRKQKAENLLQKWNSFLKEGAVTKQLQDLTATME 490

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
            L      E  K    +  +     +  + +  +++ ++   +     +       T+ +
Sbjct: 491 ALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLV 550

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA----- 685
                   L  D +   GL +   PK       L+   + +LN  T E      A     
Sbjct: 551 QSYDLIAPLTADFVYAIGLTQDNLPKIAQNTSLLTDEEKQNLNQATEEGVQLLIASSENL 610

Query: 686 --HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLG---------------- 723
             + + M +      + L+ +     N   +  S +LQ L+  G                
Sbjct: 611 KKNRYTMLSLVNSARKQLVLSAPSLFNESESKESAYLQELVHFGFSRKEKRMNHKGLSKE 670

Query: 724 ----------------GTDFFDNLKKRGQCYL---DWTRKLDYTTKQPHYKRPKPF---- 760
                                D    R Q         R +     Q   K P       
Sbjct: 671 DIGTYHSLLSSLVAYHQQSETDETSDREQDLTFVKVLARVMGKKLDQQGLKNPALPTSPS 730

Query: 761 -----------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                           Q    S S + +   + Y+ + R +L L      +  PD    G
Sbjct: 731 SKQLTKDTLQALYPTDQEFYLSTSGLTEFYRNQYSYFLRYVLGLQ--EELRLRPDARSHG 788

Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSF 867
              H I    ++     +         Q    +  FE            + +   ++ + 
Sbjct: 789 NFLHRIFERALQLPDEDSFDHRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTT 848

Query: 868 LEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYK 919
             H  +   +IE I             + ++    + + G  DRID L   G + + DYK
Sbjct: 849 -GHILRHNPAIETIKEEANFGGKEQAFIQLDNGRSVFVRGKVDRIDRLKADGAIGVVDYK 907

Query: 920 TGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
           +         Q       ++ QL    AALK                Y+ + +  +    
Sbjct: 908 S----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMYLEMAEPVQSLMA 958

Query: 975 TNDKKKYSADELSEKSLKNL 994
                    +       + L
Sbjct: 959 VKSLAGAVVEASKSMKYQGL 978


>gi|167771643|ref|ZP_02443696.1| hypothetical protein ANACOL_03015 [Anaerotruncus colihominis DSM
           17241]
 gi|167666283|gb|EDS10413.1| hypothetical protein ANACOL_03015 [Anaerotruncus colihominis DSM
           17241]
          Length = 1106

 Score =  158 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 108/912 (11%), Positives = 240/912 (26%), Gaps = 122/912 (13%)

Query: 156 IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
           I  ++T     E L        G  +      + +    +   + E   S P        
Sbjct: 123 ISELKTAGASPEALRGAAQ-DLGGAFGDKLSDIALIFDAYQAVI-ERGYSDPDDCLARAC 180

Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +             + I G    + A  +L+  V                    +W  +T
Sbjct: 181 KRLEGRNF-FAGYDVFIDGFMAFMGAEWKLLKFV--------------LTDSPHVWAALT 225

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                         T      A     L     +          +      +      P 
Sbjct: 226 CMGL-----WQGDETGALACAAHTAARLVRAAREAGAAVAAPVLLETPRRFV------PG 274

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSAL 391
                     +            V +   ++  +E   IA  +    R      +  + +
Sbjct: 275 ALAWIAQAYPQETPAPYDGAPDGVQIAACEDVYDEIEYIAGEICALVREKGYRYRDIALI 334

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
             A       ++    R+ I       + +      + +   L+A+    D  A+  L K
Sbjct: 335 GRALEPYLVPLETVFARYDIPYFADRRVDIQVHPLVNGIFCALDAVRGRFDSEAVLALAK 394

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             ++     E  L         V           +     V      +   +     +  
Sbjct: 395 TCISGIDAVEAGLLENYCFTWGV--------SGTVWAAPFVNHPDGMEGAFSDEQRERLS 446

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                +   +  ++ +   +         +        + D         + +   + R+
Sbjct: 447 RINAARAALIGPLERLADSLRGCDGRGFARAIYSYLEQV-DAACRLRDYAEGMEEGDARR 505

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
             +L   +    +  L        + I        D++   +    +    +    +   
Sbjct: 506 FLDL-SAQVWDAVIGLLDVFGGALAGISLPLARLTDLLRLGVSTVDIGSLPQTIDQVIAG 564

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAA 685
                R      + + GLNEGV+P  ++ +   S   +  L       L+T E+      
Sbjct: 565 TADRIRPNAPRAVFVIGLNEGVFPLWSSPSGIFSAAERERLRTQGVDLLRTPEQTALFER 624

Query: 686 HD--FEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGTD---------------- 726
           +   F +   +  L  T  LR+       AS  +  +  L G                  
Sbjct: 625 YYVYFALTQASEALWLTYPLRDAAGAARTASSAVDEVRALVGAPARGSAGGALARAAGER 684

Query: 727 --------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF----------PPLEAQPR 768
                    + +          +  + D    +       P             L     
Sbjct: 685 SAFDAMMRHWRDDTPETAVLRSYFTEQDPARIRTLEALGAPRAFSLEGRGAARALFGTRM 744

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
             S S  +     P++ + R  L+L      + + +  + G+L H ++ +++KK   +  
Sbjct: 745 RISPSRAELYYECPFSYFCRVGLRLRPRR--RAEFNPIESGSLIHLVLEKIVKKYGGRGL 802

Query: 829 PEINHLMKQI---------IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI--QSS 877
            ++N  + +          + +     +  P                 +E       QS+
Sbjct: 803 AQLNGELLRSEITAIIDADLKARIANYDEMPARFKYLFRRLVGTIQRLIERLALEFGQSA 862

Query: 878 IEKIFVNIPAKMAIESIGIHLT----------GFADRIDLLK-SGF--VDITDYKTGDNP 924
            E     +P  +      + L           G  DR+D+L+  G   V + DYK+G   
Sbjct: 863 FEPAAFELPIGLDAPVQPLDLRAPDGTRVIVEGIVDRVDVLEQDGKKYVRVVDYKSGAKT 922

Query: 925 -KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
                    ++ Q+ +   ++        D    A + Y+  +     D +   ++  S 
Sbjct: 923 FSLSDICYGLNMQMLIYLFSICE-----ADGAVPAGVLYMPAR-----DSVIQAERNASG 972

Query: 984 DELSEKSLKNLI 995
           +E+  + LK L 
Sbjct: 973 EEIQAQRLKRLR 984


>gi|327461178|gb|EGF07511.1| exonuclease RexB [Streptococcus sanguinis SK1057]
          Length = 1093

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 116/923 (12%), Positives = 254/923 (27%), Gaps = 137/923 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L       T  L + +  S
Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       + +   +     ++I G T        L+  +     G  ++ G   +
Sbjct: 166 SSQIAAFAQHILSGDTDEELADLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +               
Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDHIPH------------A 261

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
               +F           D  E  +   +   + + +    N++EE   +A ++R  + + 
Sbjct: 262 EAEDAFGRISRILESRYDFSEPAVEVSETDRAQLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFGQYQIPYYLGRSESMAQHPLVQFIESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       G+    ++   +  +          
Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDQFEQYLRFADIKGAGK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561
                  +   + D +    +   ++  +      ++   +      +           L
Sbjct: 420 LAKDFTANSQGKFDLDCLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +   E ++      EE  K  S +  +  +  +  K    +++ ++   +     +  
Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN  T  +  
Sbjct: 539 PATVDVVKVQSYDLIEPLAASYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598

Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721
            Q A         +         T+ L+ +     N +    S +L  L           
Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658

Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758
                                 L   +         Q +     R L           P+
Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718

Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               + QP   S S + +     YA + + +L+L     +   P
Sbjct: 719 ISKELKTETLQSETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFH 861
           D    G   H I  ++++   + +         +    ++ FE            R L  
Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDWRLARAMEETSRETEFESIYSESGQTRFARQLLL 836

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913
             + +         S IE I             + +     + ++G  DRID L K+  +
Sbjct: 837 DTARAT-GRVLAHPSGIETIGEETGFGSASKPFLTLGNGRAVTVSGKVDRIDRLTKTESL 895

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+GD     E     ++ QL    AA++  +  + D        Y+++      D
Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYKEDKG-TFGAMYLQMT-----D 949

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
            I   K   +  +   +S+K L 
Sbjct: 950 PIVALKDTKTLADAVNQSMKPLQ 972


>gi|301301111|ref|ZP_07207268.1| putative ATP-dependent nuclease subunit B [Lactobacillus salivarius
            ACS-116-V-Col5a]
 gi|300851240|gb|EFK78967.1| putative ATP-dependent nuclease subunit B [Lactobacillus salivarius
            ACS-116-V-Col5a]
          Length = 1193

 Score =  157 bits (397), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 112/973 (11%), Positives = 271/973 (27%), Gaps = 148/973 (15%)

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            + + R +    ++L     +      ++  +S    +  +    D I+ ++      E+L
Sbjct: 100  MIVYRSLQEHSDELTIFKGEQTQPGFIAQLVSQLIELQQSCITYDDIERMK------ENL 153

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNA--SSPVGYQIALMRAEAEHLMKGTK 227
                              + I  + + +         +  +      ++ E       + 
Sbjct: 154  SQQDTAD-SAELEAKLHDIAIIYRDFMQMTDSKYLKPADILPSLTQYLQNE-----DLSN 207

Query: 228  GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
               II G +        ++S +        +   L+  +       I + S   +    +
Sbjct: 208  SYFIIEGFSQFTAQEQAIISVLLQRAKEVRIDLILNRGVTD-----IEDLSDKQSLFYRS 262

Query: 288  YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
              T+           + I  +   +   V         + S +    +++D++  ++ + 
Sbjct: 263  ERTYYLLYQQARKAQVKILNDVYPQELRVETP-----ELQSLAKYWKESTDLKPINVEKI 317

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL 404
               +      ++ +I+AD    E   IA  ++  +   D       L+T D N  R +  
Sbjct: 318  GDNH------NLQVIKADTRMTEIKEIATRIKQMVALKDYRYADFLLLTPDLNKYRNIIE 371

Query: 405  -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA-----KFG 458
                 + + I +     +       +LT+L N   +   ++ +  L+K  L         
Sbjct: 372  PIFNDYKVPIFVDLAKKMIDHPLVELLTALFNVKARHYRYVDMMRLLKTELLISKTEYGY 431

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA--TQKNNTHVPHWQSRLSEED 516
               K   +  +  E + L+        +     V  R         T V    ++     
Sbjct: 432  LGIKQFRQDLDLTENLILKFGFEGSQWLRKDDWVYYRFGSSDFGTQTDVQEKITKQVNVI 491

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            +     ++    + +      K         L I+   +  +       L++   +    
Sbjct: 492  RRYIKEILPPFFKQLDEAENGKEAAQILMNFLIINGVPEQLINWRNK-ALEQGDMVMADR 550

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             E+      +L  + ++T   +     ++++++    +G T +        + I  T  +
Sbjct: 551  PEQVWNLFCALMDEYVDTLGDLSFKEEDFLNLLQTGFEGATYRQVPSTLDQVIISETTAT 610

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-NLKTAEKYIGQAAH--------- 686
            ++ +     + G  + V P        L+ + +  +      EKY+   A          
Sbjct: 611  QMNDRKVTFIFGATDLVMPNRIQNTMLLTDMDRELVQGTLDDEKYLSDTAEGRMAAEPFM 670

Query: 687  -DFEMANGTRHLIYTRS-LRENNIPTIASRWLQR--------LLVLGGTDFFDN---LKK 733
                       L ++      N      S ++ R        L    G    ++   LK 
Sbjct: 671  NYLAFMTPKERLYFSYPVAGVNEDGLRMSPYVNRIMKQFDLPLYEANGEPTLEDKKVLKF 730

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------------------------- 768
                    +  +    +    K+P P        +                         
Sbjct: 731  VATKRTALSNLIGVARQAKGQKQPLPVMWRYIYQKLQEDATYRRLTRKLMAGIEYSNIPE 790

Query: 769  ---------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                             S S+ ++   + YA + +  LKL     F+      + G  +H
Sbjct: 791  RLKTEYAEKLYGKTLNTSVSKFEEFFKNHYAFFLKYGLKLKERDVFE--LSPANTGEFYH 848

Query: 814  NIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHS--- 866
              + +L+K         T          +          P   I+        I      
Sbjct: 849  MALDKLLKTLKQDKVLITDINKSQFDAYLQQVLGGMEQLPQFQILQSSNRMQFILKQLGA 908

Query: 867  ------FLEHEEKIQSSIEKIFVNIPAKMA-------------IESIGIHLTGFADRIDL 907
                  +  H +  ++ +  +   +                       +++ G  DRID 
Sbjct: 909  TVSQMGWALHNQGQRTKMRPLETEVLFGHVGTENGLKALTYDLGNGHKVNVRGKIDRIDQ 968

Query: 908  L--KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEA--------AALKAGSFSQIDCR 955
            +   +     I DYK+  +    + A   +  Q+              L   +  +I   
Sbjct: 969  MIIDNQRYLGIVDYKSSSHKFNYQDAYYGLALQMLTYLNAMLQNTDLLLDLNAGEEI--- 1025

Query: 956  KVANLFYIRLKQK 968
            K A   Y+ L+  
Sbjct: 1026 KPAGAVYMHLQNP 1038


>gi|90962577|ref|YP_536493.1| ATP-dependent nuclease subunit B [Lactobacillus salivarius UCC118]
 gi|122448459|sp|Q1WRR9|ADDB_LACS1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|90821771|gb|ABE00410.1| ATP-dependent nuclease subunit B [Lactobacillus salivarius UCC118]
          Length = 1193

 Score =  157 bits (397), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 112/973 (11%), Positives = 271/973 (27%), Gaps = 148/973 (15%)

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            + + R +    ++L     +      ++  +S    +  +    D I+ ++      E+L
Sbjct: 100  MIVYRSLQEHSDELTIFKGEQTQPGFIAQLVSQLIELQQSCITYDDIERMK------ENL 153

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNA--SSPVGYQIALMRAEAEHLMKGTK 227
                              + I  + + +         +  +      ++ E       + 
Sbjct: 154  SQQDTAD-SAELEAKLHDIAIIYRDFMQMTDSKYLKPADILPSLTQYLQNE-----DLSN 207

Query: 228  GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
               II G +        ++S +        +   L+  +       I + S   +    +
Sbjct: 208  SYFIIEGFSQFTAQEQAIISVLLQRAKEVRIDLILNRGVTD-----IEDLSDKQSLFYRS 262

Query: 288  YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
              T+           + I  +   +   V         + S +    +++D++  ++ + 
Sbjct: 263  ERTYYLLYQQARKAQVKILNDVYPQELRVETP-----ELQSLAKYWKESTDLKPINVEKI 317

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL 404
               +      ++ +I+AD    E   IA  ++  +   D       L+T D N  R +  
Sbjct: 318  GDNH------NLQVIKADTRMTEIKEIATRIKQMVALKDYRYADFLLLTPDLNKYRNIIE 371

Query: 405  -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA-----KFG 458
                 + + I +     +       +LT+L N   +   ++ +  L+K  L         
Sbjct: 372  PIFNDYKVPIFVDLAKKMIDHPLVELLTALFNVKARHYRYVDMMRLLKTELLIPKTEYGY 431

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA--TQKNNTHVPHWQSRLSEED 516
               K   +  +  E + L+        +     V  R         T V    ++     
Sbjct: 432  LGIKQFRQDLDLTENLILKFGFEGSQWLRKDDWVYYRFGSSDFGTQTDVQEKITKQVNVI 491

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            +     ++    + +      K         L I+   +  +       L++   +    
Sbjct: 492  RRYIKEILPPFFKQLDEAENGKEAAQILMNFLIINGVPEQLINWRNK-ALEQGDMVMADR 550

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             E+      +L  + ++T   +     ++++++    +G T +        + I  T  +
Sbjct: 551  PEQVWNLFCALMDEYVDTLGDLSFKEEDFLNLLQTGFEGATYRQVPSTLDQVIISETTAT 610

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-NLKTAEKYIGQAAH--------- 686
            ++ +     + G  + V P        L+ + +  +      EKY+   A          
Sbjct: 611  QMNDRKVTFIFGATDLVMPNRIQNTMLLTDMDRELVQGTLDDEKYLSDTAEGRMAAEPFM 670

Query: 687  -DFEMANGTRHLIYTRS-LRENNIPTIASRWLQR--------LLVLGGTDFFDN---LKK 733
                       L ++      N      S ++ R        L    G    ++   LK 
Sbjct: 671  NYLAFMTPKERLYFSYPVAGVNEDGLRMSPYVNRIMKQFDLPLYEANGEPTLEDKKVLKF 730

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------------------------- 768
                    +  +    +    K+P P        +                         
Sbjct: 731  VATKRTALSNLIGVARQAKGQKQPLPVMWRYIYQKLQEDATYRRLTRKLMAGIEYSNIPE 790

Query: 769  ---------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                             S S+ ++   + YA + +  LKL     F+      + G  +H
Sbjct: 791  RLKTEYAEKLYGKTLNTSVSKFEEFFKNHYAFFLKYGLKLKERDVFE--LSPANTGEFYH 848

Query: 814  NIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHS--- 866
              + +L+K         T          +          P   I+        I      
Sbjct: 849  MALDKLLKTLKQDKVSITDINKSQFDAYLQQVLGGMEQLPQFQILQSSNRMQFILKQLGA 908

Query: 867  ------FLEHEEKIQSSIEKIFVNIPAKMA-------------IESIGIHLTGFADRIDL 907
                  +  H +  ++ +  +   +                       +++ G  DRID 
Sbjct: 909  TVSQMGWALHNQGQRTKMRPLETEVLFGHVGTENGLKALTYDLGNGHKVNVRGKIDRIDQ 968

Query: 908  L--KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEA--------AALKAGSFSQIDCR 955
            +   +     I DYK+  +    + A   +  Q+              L   +  +I   
Sbjct: 969  MIIDNQRYLGIVDYKSSSHKFNYQDAYYGLALQMLTYLNAMLQNTDLLLDLNAGEEI--- 1025

Query: 956  KVANLFYIRLKQK 968
            K A   Y+ L+  
Sbjct: 1026 KPAGAVYMHLQNP 1038


>gi|331702531|ref|YP_004399490.1| ATP-dependent helicase/deoxyribonuclease subunit B [Lactobacillus
            buchneri NRRL B-30929]
 gi|329129874|gb|AEB74427.1| ATP-dependent helicase/deoxyribonuclease subunit B [Lactobacillus
            buchneri NRRL B-30929]
          Length = 1186

 Score =  157 bits (397), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 105/942 (11%), Positives = 242/942 (25%), Gaps = 151/942 (16%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWTERLVELN 203
                 +A  I  ++      EDL  +                    I    + +R+ E N
Sbjct: 122  GFIDQIATQIAEMQAGNVLPEDLLEMLQRPDSTITNDLRDKLHDFAIIYSQYVKRISE-N 180

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                      L        +  +     I G +        L+ T+ N      V   LD
Sbjct: 181  YFDSHTVLNLLSSKL--QDIDLSGYHFYIDGFSKFTAQECGLVQTLINQSASVTVSLTLD 238

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
               PT               +         + L +      +              +   
Sbjct: 239  RPYPTE---------LPEQPNIFFQPAKLFHQLYRFAADNRVPYLK---------AVMAD 280

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
               + +     +   + ++ +  +++P+     + V + +ADN   E   +A  +   + 
Sbjct: 281  QPRVDEDMQKLEAYWITSSSLGNHQLPDQIS-PNSVQIYQADNLYSELDQVATKIHQMVA 339

Query: 384  ---ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAI-- 437
                      ++T   +  + +     T   I         ++      +L +L +    
Sbjct: 340  TGKYRYSDFLILTRHLDAYQNILEPVFTTQQIPYFKDIQQSMADHPLVELLAALFDIYDP 399

Query: 438  --FKLNDFMAIATLVKHPLA-----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
               +   +  +   +K  L                +A +  + + L+ +           
Sbjct: 400  NRTRNYRYDDVMRFLKSELVLPMIDGKPMAIDDYRQAVSLTDNLVLKNDYADTRWTQKAD 459

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKE---LAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                 +              +  E  ++   +  ++ D +          KTN+ +    
Sbjct: 460  WQYVWLPDSDEEQKTTKITDQDREISRKINIIRHMVRDLLPNFYKQFFKAKTNQEAAQIL 519

Query: 548  LSI---SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                  +               DE     +   E+  +T  SL  + ++          +
Sbjct: 520  YQFLVDAGVVDRLQDWRDA-ATDEGDINRSNQIEQVWRTFCSLLDECVQILGDKPFVPGD 578

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            +  +I    +G            + +  +   ++ ++    + G N+   P         
Sbjct: 579  FWSLIYAGFEGADYSQIPSTLDQVSVSESGMVQMNDYRVTFMIGANDDNMPDRLVNENLF 638

Query: 665  SRVMQSDLNLKTAEKY------IGQAAH-----DFEMANGTRHLIYTRSLRENNIPTIA- 712
                 + L    ++          Q A             +  LI+T + + N+   +  
Sbjct: 639  GDDDINQLQSNLSDDQYLNDPAEVQMAFEPYLNYLAFMTASDKLIFTYTNKLNDESAVKL 698

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCY-------------------------------LDW 741
            S ++ R+         +N       +                                 W
Sbjct: 699  SPYVSRIQHFFNLKIVNNPAIPDDEHDVMPYVGTKSGTLHHLIQVIQNNFDVQQDLSAGW 758

Query: 742  TRKLDYTTKQPHYKR-------------------PKPFPPLEAQPRTYSFSEIKQLINDP 782
               L Y  + P   R                   P+    L       S S+++    +P
Sbjct: 759  AVILQYLQQDPEVSRQTSKLLKSINYTNVPQSLAPEIITDLYGSELNISISQLETFYKNP 818

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQII 839
            Y  + +  LKL   P F+        GT +H+ +  +IK+   +N       +  +  ++
Sbjct: 819  YEYFLKYGLKLQERPKFE--LSTASTGTFYHDAMDRIIKQIHAQNIDLASLSDQDVSDLV 876

Query: 840  DSHFEKENLPPH---------------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                ++    P                I +       ++  +    +++  + +      
Sbjct: 877  KETVDRIINDPQNFDYVVLTSSNRMHYISMQLAATIQQMIRAL--RDQQKLTPMRPQNTE 934

Query: 885  --------------IPAKMAIESIGIHLTGFADRID--LLKSGFVD-ITDYKTG-DNPKK 926
                          +   +A +   + + G  DRID    K      I DYK+       
Sbjct: 935  LIFGQPNQKQALNGLSFDLA-DDHQVKVRGRIDRIDSMTTKDKRYFGIVDYKSSDRKFDF 993

Query: 927  ETAQKLIDPQLSLEAAALKAGSF---SQIDCRKVANLFYIRL 965
              A      QL      LK              +A   Y+ +
Sbjct: 994  NAAYDGTSMQLLTYLDVLKHNLERLNPDDKEVALAGALYLHI 1035


>gi|315924913|ref|ZP_07921130.1| ATP-dependent deoxyribonuclease subunit B [Pseudoramibacter
            alactolyticus ATCC 23263]
 gi|315621812|gb|EFV01776.1| ATP-dependent deoxyribonuclease subunit B [Pseudoramibacter
            alactolyticus ATCC 23263]
          Length = 1130

 Score =  157 bits (397), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 124/1009 (12%), Positives = 273/1009 (27%), Gaps = 133/1009 (13%)

Query: 64   FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123
             IE TG +  +   + SL  +    F+     + +    + +  R + L + IL  R++L
Sbjct: 63   LIEATGMRGLMGVEVMSLDRLAARVFSEVGGATAHF---IDDHGRRMLLTKSILSSRDEL 119

Query: 124  PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWL 182
                K +                    ++   +  +       +DL A L     G    
Sbjct: 120  QIYGKSVGRR-------------GFVNDMEAFVGELRENGFTHDDLQAVLSEMPEGSLLT 166

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                  ++    +   L           +  L+  +           + +          
Sbjct: 167  RKLKDTELILDAYEASLGNDRLD--ETDRSRLLSEKIRQANFLKDAQVWMDQFYTFSKND 224

Query: 243  ARLMSTVANHPNGAIVLPGLDCH---IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
              ++  +A+      +   LD         ++  + +   +++       +         
Sbjct: 225  FEIVGAIADRAQKLTITLPLDEDPTAADEDVFAIVRQTFADLSERTKAAGSE-------- 276

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            L  + +                       +S L P+ + +             +K    +
Sbjct: 277  LKMMAVDP---------------------ESPLDPELTWLEYEWFS-LTPQPWEKVPEHI 314

Query: 360  ALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDI 415
             L    +  +EA   A  +     +          L+ +   +   +   L  + I   +
Sbjct: 315  DLHVCSDLWDEAECAARTIIRLTRDEGYRYEDFMILVGSPETMGSEIARALAMYNIPSFV 374

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                P+      + L + L+A+       ++    K   +     +              
Sbjct: 375  DRLEPVMNHPLVAFLFAALDAVRIHLGGDSVMAYAKTAFSGLTPEQVMALDNYAQTF--- 431

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                   +           R            W      + K+  +  +  + + +    
Sbjct: 432  ---GIKGWRWQKPFQKNRFRDGRNGQKDKRYLWDLDSLNQVKDRLLSPLMSLKKEMQEAG 488

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
             ++    +    L +++      T      +D           +    L  +F +I    
Sbjct: 489  CHRERIETLVHFLEMTNIPVQLDTMA-AEAMDNGDYQRAAVNNQIWNILMGVFDQINIAL 547

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                 +   +IDI+   I+   +    ++  T+ I   L SR      L++ G NEG+ P
Sbjct: 548  GEADDDFPAFIDILRSGIETYHIGVLPKQRDTVAITDALRSRSDGTKILMILGANEGILP 607

Query: 656  KNTAKNPFLSRVMQ---SDLNLK-----TAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
                + P L+   +    D  L         +         +++  T  L  + S+ + +
Sbjct: 608  AEQNQFPVLTDWERTRIKDAGLALQNNRAYLQNRELTVLYMQVSRVTERLYCSYSMNDAD 667

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCY--------------------------LDW 741
               I    L R L+    +       R   +                             
Sbjct: 668  GKAIRRSSLVRTLMKVFPNLEVRSSVRQDEWDLDWITGTPATINTLCLRSKDNDPVSAAV 727

Query: 742  TRKLDYTTKQP------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
               LD +   P          P     L  +P   S S +++    P+A +      L  
Sbjct: 728  ASVLDPSLSTPGFFETDASLSPATATTLYEKPLHLSVSRVEKFNACPFAQFV--AFGLRP 785

Query: 796  IPHFKKDPDRTDRGTLFHNIITEL--IKKRINKNTPEINHLMKQIIDSHFE--------K 845
                  +    D G + H +I  +    +  ++    ++   +  +   F          
Sbjct: 786  QLVIPYEVTAPDMGNIMHTLIERIFKWTETYDQTLDTLSAEERGALIQTFLNDLIQNTHD 845

Query: 846  ENLPPHIDIIWRHL-FHKISHSFLEHEEKIQSSIEKIF--VNIPAK--MAIESIG--IHL 898
                      +R     +I  + L       +    ++       K  + I   G    L
Sbjct: 846  AVFDSSGQFRYRGRQLRRIGETTLAALSAQLAKGTFVYRDSEHFFKEPLTIGGDGKAAEL 905

Query: 899  TGFADRIDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
             GF DRID    G    V + DYK+  +          +  QL +           +   
Sbjct: 906  RGFVDRIDSFSDGEDTFVKVIDYKSSAHDLDAAEIYYGLSLQLLIYMGIGLKVCGEKEKA 965

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
                  FY      FK+D    ++   S DE+ +K +  L ++     N
Sbjct: 966  ALPGAAFY------FKMDDPMVEENSISKDEILKKQISEL-KLQGYFLN 1007


>gi|88703286|ref|ZP_01101002.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88702000|gb|EAQ99103.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 884

 Score =  157 bits (397), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 102/760 (13%), Positives = 217/760 (28%), Gaps = 93/760 (12%)

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
             M     ++S   LPP    +       +++   ++    + L      R E  + A   
Sbjct: 169  AMDQAVAIMSDDDLPPLHDALCRAAGECHRVAPPRQEGRVLPLRGFSEPRAELQAAARWC 228

Query: 379  RMS-LDENKKKSALITADRNLARRVKLELTR----------FGINIDISAGIPLSTTLHS 427
            R   L +   + A++ +D    R       R            + ++ + G  L      
Sbjct: 229  REQYLKDPGGRYAVVLSDMQNDRDRLEFFLRQEFDCLSKNYASLPVNFATGFRLDRVPLV 288

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
                 +L           + TL++               A         R     + +  
Sbjct: 289  RDALRILELSLPEVTVETVITLLQSRFVSPFKIHAEKREASLRRLRELARERVPQHVLHG 348

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
            +   + DR         V    +  + + +                              
Sbjct: 349  VLEELFDRSLGAPPWDLVLQRSTNGAWQKRA----------------------------- 379

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             S S W +     L          L +L +++  +   +L +   +     + +  E I 
Sbjct: 380  RSPSQWLEPFKAILNAWGWPYGTALDSLEYQQAVQWRETLDAFAAQDHVVAELSLAEAIQ 439

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
             +  L+  +  +P+ +  + + +LG LE+  L FD L + G++   WP     NP+L   
Sbjct: 440  SLRELLGEQQFQPRTDDQA-VQVLGPLETTGLQFDALWITGMSADRWPAAAQPNPYLPHS 498

Query: 668  MQSDLNLKTAEKYIGQ---AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
            +Q    +  A+    +    A   +   G   +  +     +    + S  L        
Sbjct: 499  LQRQSGMPHADAAWERRWAEARWTQWLQGATEIQISYVNLVDGSEVLPSSLLS------- 551

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                       +    W  +   +T +       P    E   +    S ++Q    P+ 
Sbjct: 552  DGAVTAETSESRPDDRWLTQRAASTFESLALAAVPVSDEERVSQGVGTSVLEQQSACPFL 611

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
             +A   L    +P        ++RGTL H  +  L  +  +    E  H + +       
Sbjct: 612  AFAAARLAATPLPAPVAGLLPSERGTLLHRALYTLWGEIKD---SENLHRIDESELEAVI 668

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
               +   +  I +     +  + L+ E++    +   ++ +         G  +      
Sbjct: 669  DAAVGFALQGIDKARLDVLGGALLDLEQQRLRRVLLRWLEVE---RARDEGFTVVAR--- 722

Query: 905  IDL--------------------LKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLEAA 942
             +                     L  G   I DYK+G           +   PQL L A 
Sbjct: 723  -EEPREHVLGGLRLRLRLDRVDELSDGSTVIVDYKSGSPGSVSQWLGDRPARPQLPLYAL 781

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQK---------FKIDCITNDKKKYSADELSEKSLKN 993
                 S       K     +  + ++                 D +   A E + ++L+ 
Sbjct: 782  LEPFASGIAYASLKPGMEGFKGIGKRAFEAGIASARDHVDDDGDGETQDAPENAMEALRG 841

Query: 994  -LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
               + +  L       IS +  + ++    +   L R+ E
Sbjct: 842  HWRKALAELAEEFIGGISPVDPTVEACRYCQRFSLCRLGE 881


>gi|229825743|ref|ZP_04451812.1| hypothetical protein GCWU000182_01106 [Abiotrophia defectiva ATCC
            49176]
 gi|229790306|gb|EEP26420.1| hypothetical protein GCWU000182_01106 [Abiotrophia defectiva ATCC
            49176]
          Length = 1133

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 125/1032 (12%), Positives = 252/1032 (24%), Gaps = 204/1032 (19%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
               ++L  ++          ++L  +K +              +  + +     E   S 
Sbjct: 117  GFTEDLKSLLSEFMQYGITPDNLTKIKEKTSSPVLAAKLQDAALVYRAFNNYKKEKYIS- 175

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                 + ++  E           I   G TG  P   +++  +        +L  L    
Sbjct: 176  -AEQILEVLANEISRSKLLENSVICFDGYTGFTPVQLKVIDLL--LVKAEHLLFTLTVSE 232

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                     +              H        ++ L  +R        V       +  
Sbjct: 233  KDYYSEEDEKFRLF----------HLSKDTINKINKLAGER-------GVEVARPVTAEF 275

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
              K               ++          + V +    N REE   +   +   + +  
Sbjct: 276  CGKVKALSLLERQIFRYPVKKT-----DSENSVRINVCKNPREEVERLIPDILSLVRDEG 330

Query: 387  ---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               +  A++  D      +    L+  G+   + +   ++       + + L  + +   
Sbjct: 331  LRYRDIAVVLGDMEEYGEMVVDTLSSKGVPCFLDSKKTIADNPFVEYIKASLLVVEENFS 390

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            + A+   ++                 +  E+           I   +             
Sbjct: 391  YDAVMRYLRSGF-----------ANVDVYEVDIFENYILRRGIKGFRRYQT--------- 430

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
            + +    S      + L V LVD        L + K+        L        +   L 
Sbjct: 431  SFIKDEASEEESISEGLRVTLVDEFKPLYDILKSKKSKAEDFVKALYEFVSASGSEERLM 490

Query: 563  NVCLDEHR---KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
             +  D       +    +    + + S+F K+ E     K +  E+  I+          
Sbjct: 491  KLSADFEEKGKMIAAREYAGCYRIVMSVFEKMYELLGDEKLSIEEFRSILESGFSEGKAG 550

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------ 673
                    + I     +RL +   L   G NEG  PK+      ++   +  L       
Sbjct: 551  FIPPGLDQIVIGDVERTRLKDIKVLFCLGFNEGKVPKSVGARGIITDTEKEKLAGMNVEL 610

Query: 674  LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI----------------------- 708
              TA++   +      M     T  L  + S                             
Sbjct: 611  APTAKERAFREQFYIYMLFSKPTERLYVSYSSSNMEGKPIKPSSVINRLRAVFKQEIVSE 670

Query: 709  PTIASRWLQRLLVLGG-TDFFDNLKKRGQ--------------CYLDWTRKLDYTTKQPH 753
            PT     +  +   GG       +KKR                 Y D   K+   T    
Sbjct: 671  PTEEVSLINEIRKDGGMELILSAIKKRDLKDSTVINLIKYYNCHYDDRYNKIIEGTVSKA 730

Query: 754  YKRPKPFPPLEAQPRTY--SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
            +                  S + ++   +  YA + +  L+L     F+      D G +
Sbjct: 731  HGNSLEKYIATELYGELKGSVTRLELFSSCAYAHFIKHGLRLKERKEFE--LKPMDIGNI 788

Query: 812  FHNIITELIKKRINKNT------PEINHLMKQI-IDSHF--EKENLPPHIDIIWR-HLFH 861
             H I+    KK + K         E    ++   I   F    +         +R     
Sbjct: 789  LHEILERFAKKVVEKGESFNSISEETREAIQAESIAEAFNYGDDIFNASFRNNYRLTRLK 848

Query: 862  KISHSFLEHEEKIQSS--IEKIFVNIPAKMAIESIGIHLTGFADRI-----DLLKSGFV- 913
            +I+   +        S     +             G    G  DRI     D L  G   
Sbjct: 849  RITDRAVRTVLTQIKSGLFTPVAFEEEFVTK----GF--KGRIDRIDSVLSDYLPDGTRL 902

Query: 914  ---------------DITDYKTG-DNPKKETAQKLIDPQLSLEA---------------- 941
                            + DYK+G      + A   +D QL                    
Sbjct: 903  IDSKEFADFNKVRYMRVIDYKSGNKVLDLDRAYYGLDLQLFTYLKYIREEIGKRREYKNN 962

Query: 942  AALKAGS-----------FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
              + +G+           F   +   + ++ +  +  + K      D K      L   +
Sbjct: 963  LIIPSGAYYFHIDDPVIDFGGGEEAVIKSMRFDGITLEGKHHISLIDSKIADNSGLVAGA 1022

Query: 991  -----------------------LKNLIEIVTLLQNGEQPFISH-------LRL----SE 1016
                                    + +  ++       + F S         +     +E
Sbjct: 1023 DSDVIKLKTKKDGEPSSLTKLYSREEMNALIDNSDLETEKFKSRILKGEITPKPYCLGNE 1082

Query: 1017 KSNIQSEYDHLA 1028
            K     EY+ L 
Sbjct: 1083 KGCDYCEYNGLC 1094


>gi|332362565|gb|EGJ40365.1| exonuclease RexB [Streptococcus sanguinis SK1056]
          Length = 1093

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 119/923 (12%), Positives = 253/923 (27%), Gaps = 137/923 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L++ +           L       T  L + +  S
Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEDPEKRED-------LVKIFTAVTAALNKGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       + +   +     ++I G T        L+  +     G  ++ G   +
Sbjct: 166 SSQIAAFAQHILSGDTDEELKNLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +              +
Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISHAEAEDAFGRISKI 273

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
           + S+      T  +  TD             S + +    N++EE   +A ++R  + + 
Sbjct: 274 LESRYDFSESTVSLSETDR------------SQLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 ARYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       G     ++   +  +          
Sbjct: 382 LEDLLNLLKTGL----------------------YGGLTQEELDHFEQYLRFADIKGSAK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561
                  +   + D +    +   ++  +      ++   +      +           L
Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMSPLQDFFKSRSQTASGLLAKFTDFVQAARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +     ++      EE  K  S +  +  +  +  K    +++ +I   +     +  
Sbjct: 480 TALLQGASQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALILSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN  T  +  
Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598

Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721
            Q A         +         T+ L+ +     N +    S +L  L           
Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658

Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758
                                 L   +         Q +     R L           P+
Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718

Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               + QP   S S + +     YA + + +L+L     +   P
Sbjct: 719 ISKELKTESLQPETLQALYPKNQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861
           D    G   H I  ++++   + +         +      E E++          R L  
Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLL 836

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK-------MAIESIGIHLTGFADRIDLL-KSGFV 913
             + +         S IE I              +      + + G  DRID L K+  +
Sbjct: 837 DTARATGRV-LAHPSGIETIGEETGFGSASKPFLILENGRAVTVRGKVDRIDRLTKTESL 895

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+GD     E     ++ QL    AA++  +  Q D        Y+++      D
Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
            I   K   +  +   +S+K L 
Sbjct: 950 PIVALKDTKTLADAVSQSMKPLQ 972


>gi|21910049|ref|NP_664317.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS315]
 gi|28896253|ref|NP_802603.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes SSI-1]
 gi|81759285|sp|Q8K816|ADDB_STRP3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|21904240|gb|AAM79120.1| putative ATP-dependent exonuclease subunit B [Streptococcus pyogenes
            MGAS315]
 gi|28811504|dbj|BAC64436.1| putative ATP-dependent exonuclease, subunit B [Streptococcus pyogenes
            SSI-1]
          Length = 1071

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 135/986 (13%), Positives = 276/986 (27%), Gaps = 140/986 (14%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S  ++ L+   L +I+   L  +  +  P        S        + L ++   ++  +
Sbjct: 75   SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                DL  L             D +KI     T  + +           A          
Sbjct: 130  LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            + +K  ++I G +        L+S + N+    I+   +        +         I  
Sbjct: 184  QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +    S H    LA+                ++       + V   +F           D
Sbjct: 235  NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              +      +      +L +  +++EE   +A ++R  L E  +   ++    ++     
Sbjct: 281  FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340

Query: 404  LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                   +F I   +    P++       + SL  +         I  ++K  L      
Sbjct: 341  QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                      D+                       ++   +   
Sbjct: 401  -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577
              L +     + PL     ++       S+ D   L    +   +N+      +L     
Sbjct: 436  DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE  K  + + +         K    + + +I   +     +        + I      +
Sbjct: 494  EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686
              +   +   GL +  +PK    +  LS   ++ +N     ++   A           A 
Sbjct: 554  PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725
                A  T+ L+ +     N      S +L+ L+  G                       
Sbjct: 614  SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKA 672

Query: 726  -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760
                       D  +   +    +    R L    ++   + P                 
Sbjct: 673  LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKSLSKEVIE 732

Query: 761  -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                +  P   S + +    N+ Y  + + +L L+        PD    G   H +   L
Sbjct: 733  VCFPKRIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790

Query: 820  IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +K    +               +S F++             +   I  S      ++  +
Sbjct: 791  MKDHTQEPFDNKLKQAIYHTNQESFFQQIYQDNAEAEYSLAILEDIVRST-APILQLNQN 849

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936
            I+ I       + +    I + G  DRID L  G + I DYK+  N     T    + PQ
Sbjct: 850  IQVIDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L    AALK  +   I+  ++    Y+ L Q  K+D +T  +   +  E   K+L     
Sbjct: 909  LVTYLAALKQITPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQS 1022
               +    E+  +S      K+ + S
Sbjct: 962  YKGIFSEVEKEHLSTGAYQTKNALYS 987


>gi|322376657|ref|ZP_08051150.1| ATP-dependent nuclease subunit B [Streptococcus sp. M334]
 gi|321282464|gb|EFX59471.1| ATP-dependent nuclease subunit B [Streptococcus sp. M334]
          Length = 1108

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 113/931 (12%), Positives = 240/931 (25%), Gaps = 145/931 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                 + L ++   I T +  + DL +L +E             +  + Y  +      
Sbjct: 127 QDPQFIQQLIELYHEIATAQMNFLDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----G 178

Query: 204 ASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A  +       T+  ++I G T       R++  +       ++   
Sbjct: 179 QLAQGSQLSHLIEAIEDDKVSSDFTQIALVIDGFTRFSAEEERIVDLLHGKGVEIVIGAY 238

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                  + +        ++   +     H                E +      S  + 
Sbjct: 239 ASKKAYASPFREGNLYQASVEFLH-----HLASKYQTPAQDYSQTHEKMDSFDKASRLLE 293

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
                              + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 294 ------------------SSYDFSELTLDVDEKDRENLQIWSCLTQKEELELVARSIRQK 335

Query: 382 LDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L  N          L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 336 LHANPDLSYKHFRILLGDVPSYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQFVESILAL 395

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + N  DI   +  +    
Sbjct: 396 KRYRFRQEDLINLLRTGL----------------------YTDLNQSDIDAFEQYIRYLG 433

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                       +S   +   E    L   IL  +  L T +  K             + 
Sbjct: 434 INGLPAFQQTFTKSHHGKFSLERLNALRLRILTPLETLFTSRKQKTENLLQKWNVFLKEG 493

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            VT            L      E  K    +  +     +  + +  +++ ++   +   
Sbjct: 494 AVTKQLQDLTATMEALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLS 553

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
             +       T+ +        L  D +   GL +   PK       L+   + +LN +T
Sbjct: 554 QYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKIAQNTSLLTDEERQNLNQET 613

Query: 677 AEKYIGQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
            E      A         +          + L+ +     N   +  S +LQ L+  G +
Sbjct: 614 EEGAQLLIASSENLKKNRYTMISLVNSARKQLVLSAPSLFNESESKESTYLQELVHFGFS 673

Query: 726 DFFDNLKKRG-----------------------------------------------QCY 738
                +  +G                                               Q  
Sbjct: 674 RREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSETEQDLTFVKVLARVMGKKLNQHG 733

Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
           L         + +P  K          Q    S S + +   + Y+ + R +L L     
Sbjct: 734 LANPALPTSPSSKPLTKDTLQALYPAEQEFYLSTSGLTEFYRNQYSYFLRYVLGLQ--EE 791

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIW 856
            +  PD    G   H I    ++     +         Q    +  FE            
Sbjct: 792 LRLRPDARSHGNFLHRIFERALQLPDEDSFDHRLEQAIQETSQEREFEAIYQESLEAQFT 851

Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL- 908
           + +   ++ +   H  +   +IE I             + ++    + + G  DRID L 
Sbjct: 852 KEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRLK 910

Query: 909 KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
             G + + DYK+         Q       ++ QL    AALK                Y+
Sbjct: 911 ADGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMYL 961

Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            + +  +             +       + L
Sbjct: 962 EMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 992


>gi|126434059|ref|YP_001069750.1| UvrD/REP helicase [Mycobacterium sp. JLS]
 gi|126233859|gb|ABN97259.1| UvrD/REP helicase [Mycobacterium sp. JLS]
          Length = 1091

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 125/1050 (11%), Positives = 257/1050 (24%), Gaps = 140/1050 (13%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57
            +++  V    P          A    T+     +   N       V     T++A     
Sbjct: 21   DEQAAVIAAPPGPVVVIAGAGAGKTETMAARVVWLVANGYATPGQVLGLTFTRKAAGQLL 80

Query: 58   QELRSEFIEITGKKSTILPIIKS-LGDVV-------EEKFTADLLLSYNLNPPVSNIQRL 109
            + +R+    ++G  + ++P I   LG             F   LL  + L  P+    RL
Sbjct: 81   RRVRTRLARLSG--AGLVPGIGPGLGATDDPPTVSTYHAFAGMLLRDHGLLLPIEPETRL 138

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIETEEKKW 166
            L    L  +    + +    L  E   +        + LA  LA+ +   D +     + 
Sbjct: 139  LGETELWQLAHRVVCEHPGPL--EIDKTPAAVTDMVLRLAGQLAEHLVDTDELRDTHVEL 196

Query: 167  EDLHALKNE----KYGMWWLLAADFLK---------IASKYWTERLVELNASSPVGYQIA 213
            E L          +           L                  R+             A
Sbjct: 197  ERLVHTLPAGPYQRDRGPSQWLLRMLATQTERTELIPLVDALHRRMQSEKVMDFGMQMAA 256

Query: 214  LMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHI 266
              R  A H       +     +++     +  A    +S +      +G  +    D   
Sbjct: 257  AARLAAAHPQVGAELRARYRVVLLDEYQDTGHAQRVALSALFGGGVDDGLALTAVGDPIQ 316

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                W   +  +    +++   S      + +L          +     VS E   RS+ 
Sbjct: 317  SIYGWRGASATNLPRFATDFPLSDCTPARVLELRTSWRNPPSTLHLANAVSAEARQRSVA 376

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
            +      P          L + +   +   +D      D  R E            DE  
Sbjct: 377  VRSLRPRPGAEPGTIRLALLDNVAAERDWLADEVARRYDAARAE------------DEAP 424

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              +A++      A  +   LT  G+ +++     L      + + ++L  +       A 
Sbjct: 425  PTAAVLLRRNADAAPMAEALTARGVPVEVVGLAGLLGVAEVADVVAMLRLVADPTAGAAA 484

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
               V  P  + G  +      +         G + +   +  ++      A   +    P
Sbjct: 485  MRTVTGPRWRLGGRDIAALWRRAVELDDGGPGPEATAAEIVARAAPDADAACLADAICDP 544

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                R S E     V L   +      L     +  +    +   D              
Sbjct: 545  GPAERYSPEGYRRIVALGRELTSLRGHLGIALPDLVTEVRRVLGVDVEAR---------- 594

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                        E       + +          +  + ++D      +G         + 
Sbjct: 595  AAMPVPAGWSGTEHLDAFVDVVADYAGRPGATISGLLAYLDAAMERENGLAPADLAVSTE 654

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL------------ 674
             + IL    ++ L +  + +  L+  ++P       +L+        L            
Sbjct: 655  RVQILTVHAAKGLEWQVVAVPHLSGRIFPSTAQARTWLTDPADLPPLLRGDRATTTDHGV 714

Query: 675  ------------------------KTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENN 707
                                        +   +    +         +            
Sbjct: 715  PVLDTSDVNDRKILSDRINDHKRHLEQRRVDEERRLLYVALTRAEDTLLLSGHHWGATEA 774

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
             P   S +L+ L  +                                 +   +P   A  
Sbjct: 775  KPRGPSEFLEELKDIIDRAEQAGQPCGVVDQWAPAPAEGEKNPLRDNVKEVLWPADPAGG 834

Query: 768  RTYSFSEIKQLINDPYA-------------------VYARRILKLDFIPHFKKDPDRTDR 808
            R  +     QL+    A                   +  R             +   +  
Sbjct: 835  RRAAVDRGAQLVARAMAGAVETVQDVDGWAADVDALLAERERAAQKPPLTLPAEVSVSTL 894

Query: 809  GTLF---HNIITELIKKRINKNTPEIN--HLMKQIIDSHFEKE----------NLPPHID 853
              L      +++ L ++   +  P  +        +  +F  E           +     
Sbjct: 895  VNLSNDPDAVLSRLNRRVPTRPDPNASLGTAFHDWVQRYFGAERLFDLDDLPGAVDSDFR 954

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913
                    ++  SF+      +     I V +P  M I      + G  D +     G  
Sbjct: 955  RTEAEQLTELQTSFMLSPWAAR---TPIDVEVPFDMVIGET--MVRGRIDAVFADDDGGA 1009

Query: 914  DITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
             I D+KTG  P   +A +    QL++   A
Sbjct: 1010 TIVDWKTGAAPDTPSAAEHAAIQLAVYRLA 1039


>gi|312129740|ref|YP_003997080.1| hypothetical protein Lbys_0997 [Leadbetterella byssophila DSM 17132]
 gi|311906286|gb|ADQ16727.1| hypothetical protein Lbys_0997 [Leadbetterella byssophila DSM 17132]
          Length = 901

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/446 (15%), Positives = 141/446 (31%), Gaps = 40/446 (8%)

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              +  +   +  +    + G ++  + E ++ + I+  LE+R L+FD +      EG  P
Sbjct: 448  RHLDVSKPAFRLLFQEFLKGLSLPFEKEPNAKVQIMSMLETRCLDFDEVTFLSFVEGKLP 507

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN--IPTIA 712
                 N FL      +  L T        A+ F         +      +  +       
Sbjct: 508  TANKSNSFLPFDAILEFKLPTYSDQDAIMAYHFYRLLQRAEKVNILYVQQGGSGVGRQEK 567

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP--FPPLEAQPRTY 770
            SR++ ++      D   + K +          L    +    K  +           R  
Sbjct: 568  SRFIYQIEEELCRDPKVDGKIKFSTTEINLGDLVKPKEITIPKTDEILEKAKDYFTNRGL 627

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE-----LIKKRIN 825
            S + + +    P A Y + +  +      +        GTL H  + +     + K    
Sbjct: 628  SATALSEYFTSPLAFYWKYLEGIRENNMDEATIGANVFGTLIHYALEKADLPYVGKSITK 687

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQ---SSIEK 880
            ++       + +  D   ++             +  K++   L   +  +I+        
Sbjct: 688  EDLEAQKLWVIKNFDQLIQECKPEFDFSYGLNAVLKKVALDLLIKYYHMRIRTYTEPFTI 747

Query: 881  IFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK------------ 926
            + +    +  + I  I + + G  D+++      + I DYKTG                 
Sbjct: 748  VALEKKFRKILDIGGIKLKVEGAIDKLEKHGD-TLVIIDYKTGKVEDVTYTHNPEVSFTE 806

Query: 927  --ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
              +  ++    QL L         F  I   +V +  Y     +   D I  + K  S +
Sbjct: 807  ELKERKRDKFRQLLLY--------FFLIHSEEVPDAKYGFYSFRALNDRIDMEVKGLSKE 858

Query: 985  ELSEKSLKNLIEIVTLLQNGEQPFIS 1010
            EL       + E+V  + + E+PF +
Sbjct: 859  ELLSGIQGLIEEMVLEVLDKEKPFSA 884



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 73/276 (26%), Gaps = 27/276 (9%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
           G           +   L  + I +P++RA      E   ++       P I S+ D ++E
Sbjct: 7   GRAAAEVFQSAKDLSDLQKLHIVLPSRRAALYFGRELASLSAI-PFFAPKISSIDDFIQE 65

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP----A 143
                L+ S +L               +   W+     +  + +     +L        +
Sbjct: 66  TSGLQLIKSVDLY------------FEIYKEWKQLDGSLTLEHFLTWVPTLVKDLNLIDS 113

Query: 144 NAIWLAKNLADIIDI---IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
           + +   K L   +D    ++      E         +   +      + +      ERL 
Sbjct: 114 SLLDDTKGLFTYLDQADALKRWGINAE---NNVVTDFAGSYFSFFKKMGLVYHTLRERLA 170

Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                              +   K     I   G      A   ++  + +    A  + 
Sbjct: 171 AKGVGYSGLLYRTAAEKAIDKEWKEDFYFI---GLNALSTAEEVIIKHLVHIGK-AKCIW 226

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
             D +   +      +     +S       + Q SL
Sbjct: 227 DTDDYYMESKDKAGRKLRKYKSSRLFGKEWYFQESL 262


>gi|25027347|ref|NP_737401.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
            YS-314]
 gi|23492628|dbj|BAC17601.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
            YS-314]
          Length = 1175

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 112/1068 (10%), Positives = 265/1068 (24%), Gaps = 181/1068 (16%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV------------------EE 87
             V     T++A Q+L     +     +     I +L D+                    +
Sbjct: 162  QVLGLTFTRKAAQQLSQRIRQRLETLAG----IPTLRDLDPSGGIARSLQAITPTVSTYD 217

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
             +   LL  Y L  PV    RL+    L  I R  + +   +L      +          
Sbjct: 218  SYAGSLLREYGLLLPVEPSARLITQTELYHIARQVVDNYRGELTATQSPATVTEY----- 272

Query: 148  LAKNLADIIDIIETEEKKWEDLHAL--------------------KNEKYGMWW--LLAA 185
                L D++  ++      +++                         ++   W    +  
Sbjct: 273  ----LLDLVSEMDNHMVTPDEIREESQPFINLFEELPTHNGKDTPLPQEMARWRDTQITR 328

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIP 240
                   +   + L +    +         R  + H       +     +++     +  
Sbjct: 329  LQYLPLVEQLKQELHDRAVITFGEQMSKAARLASRHPQVGYSQRRRFRVVMLDEYQDTSH 388

Query: 241  ATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            +   L+ ++    + G  V    D       W   T  +      +              
Sbjct: 389  SQRVLLRSLFGGTDPGLTVTAVGDPMQAIYGWRGATAANLENFVGDFPV----------- 437

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            +          + L            + +             T  ++   P       +V
Sbjct: 438  ISLDARTDAPKRELTTSWRNPPEVLELANAVSREVLGPADAPTRTVQPLEPRPGAPTGEV 497

Query: 360  ALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISA 417
             +      +EE   +A  L+   D   +   +A++   R  +  +  EL   GI ++I  
Sbjct: 498  QIGWFATAQEERAFVADELKKYWDARSEKFTAAVLVRKRRHSEPMAAELRARGIPVEIVG 557

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK-------FGFPEKYLSRAKNA 470
               L      + + ++   + +  D  A   ++  P                     +  
Sbjct: 558  LSGLLDVPEVADMVAIATMLVRPQDNRAALRILGGPHVGLGIADIQVLQRRAANLAGRVR 617

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED-------------- 516
                  +       +  L + + D + T+               E               
Sbjct: 618  PGSPKEKEPLPEEPLERLAAQIADTVPTEPEEIVGLTDAVSDLGEATNFSLEGLRRLRRL 677

Query: 517  ----------------KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                             ++   + +        L       +   G + +  +       
Sbjct: 678  AAQLRHLRTNSLGHSVADIFADIEEVFGIRTEVLARENPRADGATGTVHLDRFADEVAAH 737

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII---------------ETGSCIKANAIEW 605
                  +          +E+G     +  +                 +  S + A+A  +
Sbjct: 738  SSVSLPELLDYFQLARDQEDGLEPGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADANTY 797

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                   +      P   +         L++  +     +     E      ++     S
Sbjct: 798  DAKAFTWLKNVKHIPSSLRGDAGEGSPELDTSGVENRRDLQAAEKEYTAEVRSSLAEENS 857

Query: 666  RVMQSDLNLKTAEKYIGQ---------------AAHDFEMANGTRHLIYTRSLRENN--- 707
            R+    + +  +E+ +                  AH   +       + T    E     
Sbjct: 858  RLFY--VGITRSERALMVTGSAIDGTTTRAKVPYAHLETLKATAPDAVVTWWEGEEADVE 915

Query: 708  ---IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY---KRPKPFP 761
                       +     +               +     +L            +R +   
Sbjct: 916  KLPAEEAMYPAVTIPPGVAEGAELVRATPSDASFDGGIEELWEREVTVLIDEHRRLQSPT 975

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                  R  + +++  L N+P    ARR+ +               RGT FH  + +   
Sbjct: 976  LEVEISRELTATDLVNLKNNPEQF-ARRLRRPVPFKPNTY----AKRGTQFHQWLEDRFG 1030

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                 +  ++  + +++ +  FE+                          E   +     
Sbjct: 1031 ASALLDEDQLPGMDEELSEQTFEELR--------------------AAFLESRWADRTPN 1070

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
            +V  P ++ I      + G  D +         + D+KTG  P+       I  QL++  
Sbjct: 1071 YVEHPFEVVI--GRHVIRGRMDAVFHEPDDTWLVVDWKTGQTPRGAEMDAAII-QLAVYR 1127

Query: 942  AALKAGSFSQIDCRKVANLF-YIRLKQKFKIDCITNDKKKYSADELSE 988
             A    S   ID ++V   F Y+     F+ D + +  +     + ++
Sbjct: 1128 IAWA--SLRGIDPQQVRGAFHYVAHNHTFEPDHLPDAGELALLLDGAQ 1173


>gi|331268545|ref|YP_004395037.1| ATP-dependent deoxyribonuclease subunit B [Clostridium botulinum
            BKT015925]
 gi|329125095|gb|AEB75040.1| ATP-dependent deoxyribonuclease subunit B [Clostridium botulinum
            BKT015925]
          Length = 1146

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 109/954 (11%), Positives = 244/954 (25%), Gaps = 142/954 (14%)

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIAS 192
            S L +  + AN      N++DII  ++  +    +L A L   +   +       +    
Sbjct: 115  SDLKIFGTAANQEGFTNNISDIITELKRYDITPSELRASLNLIEEDEFLKDKIIDISNIF 174

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            + + E L +    +       L+  + +         I I   +   P   ++   +   
Sbjct: 175  EEFEENLHKNYIDNEDEL--TLLCKKLDESEMYNGAEIWIDEFSSFTPQQYKIFEKLIKK 232

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                 V   +D +      +              T                         
Sbjct: 233  VKRINVTLCMDYYKQIDSTDVFAPTKNTEQKLIKTLED---------------------- 270

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
             G   ++    +      F   +       +  +           ++ +I A N   E  
Sbjct: 271  NGIPIDKPIILNNTNLDRFKDNEEMRFVEENYFKYPYKPYTDKTENIKIIRAVNPYSEIE 330

Query: 373  SIAIALRM---SLDENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSS 428
            +IA  +       D   ++ A+I+ + +   ++       + I   I     +       
Sbjct: 331  NIAKEIVKITKDTDIRYREIAVISRELDGYEKIVKTIFNEYEIPHFIDKKKEVDDNPLIV 390

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            ++TS++    K   + ++   +K  LA     +  L         +  +   +S      
Sbjct: 391  LITSVIEIFNKSWSYESMFRYLKTGLANIEKEDIDLLENYVLAYGIRGKNKWSSIWEYGN 450

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
            + ++      +   +          +                            S   N 
Sbjct: 451  EEILEKINDIRIKVSEPLIKFYSKIKGK-----------TNAEEICTAVYNFLCSIGVNE 499

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            +I  W              +  +     + +    +  L  +++E     K    +++ I
Sbjct: 500  AIEKWVYKFKE--------DGNQQLVKEYSQIWNIVIELLDQVVEVFKEEKLELKDFVKI 551

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            ++       +         + +      R      L + G+N+G++P  +     LS   
Sbjct: 552  LSLGFKDHKMGLIPPSLDQVLVSAVERVRTHQIKLLYIIGVNDGIFPAISKNEGILSDSD 611

Query: 669  Q---SDLNLKTAEKY----IGQAAHDFEMANG-------------------TRHLIYTRS 702
            +     + ++ AE        +    +                           +I TR 
Sbjct: 612  RGYLKKVGIEIAEDTKSKAFEEQYLIYRTLTTTEKYLRLCYSIADYEGKALRPSIIITRF 671

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
                   T  S  +         +            +   R+ D   K   +        
Sbjct: 672  KALFPSITEESDNILEEDNKQDIELISREIPTFNSLVSVIRREDEKIKVHPFWSDVYKWY 731

Query: 763  LEAQPRT---------------------------------YSFSEIKQLINDPYAVYARR 789
             E                                       S S +++    P+  Y + 
Sbjct: 732  SENPNWKEKVSTVFSAVSYTNAVNDISEEKVRKLYGNRLYLSVSRLEKYAQCPFGYYIKY 791

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQII 839
             LK      F       D GT  HN+I E             +   +   +    +    
Sbjct: 792  GLKAKERKLF--ALTPPDLGTFMHNVIDEFSETVDKNCLKWYEIHKEWCEKTVSEIVDRK 849

Query: 840  DSHFEKENLPPHIDIIWR-HLFHKISHSFLEH--EEKIQSSIEKIFVNIPA--------- 887
                            +      ++    +    E   +S  + I   I           
Sbjct: 850  SIEVSGGIFNSSPRYKYFTERLKRVLIKTILVIIEHLKRSGFQPIGHEIGFGNEESYPPI 909

Query: 888  KMAI-ESIGIHLTGFADRIDLLK-SGF--VDITDYKTG-DNPKKETAQKLIDPQLSLEA- 941
            ++ +     + L G  DR+D L         I DYK+G  +         +  QL     
Sbjct: 910  EIELSNGEKVKLIGRIDRVDKLDMDNKDYYRIIDYKSGNKDFSLSDVYYGLQLQLLTYLD 969

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            A L      + +      + Y+++      D I   K+  S +E+ ++ +K L 
Sbjct: 970  AILTNEEIKEKEPVVPGGVLYLKID-----DPIIKGKRNLSDEEIEDEIMKALK 1018


>gi|195977956|ref|YP_002123200.1| ATP-dependent nuclease subunit B AddB [Streptococcus equi subsp.
            zooepidemicus MGCS10565]
 gi|195974661|gb|ACG62187.1| ATP-dependent nuclease subunit B AddB [Streptococcus equi subsp.
            zooepidemicus MGCS10565]
          Length = 1104

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 130/958 (13%), Positives = 264/958 (27%), Gaps = 137/958 (14%)

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
             E  L +             L ++   ++       DL  L   +         D + I 
Sbjct: 129  QEDELKVFHRLRTDQAFIAQLVELYKELQAANLTAFDLTTLDRPEKQE------DLITIM 182

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            +K   E+L+             L  A        +  +  ++I G T       +L++ +
Sbjct: 183  TKA--EQLIAQGDYDQSSRLAQLAEAIKSKSLDDELRQTVLVIDGFTRFSAEEEQLLALL 240

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                   ++      +I    +     K     +S        Q    K +         
Sbjct: 241  NEACEEIVIGA----YISQKAYRLAFTKGNLYEASLAFIQQLAQQFQTKPI--------- 287

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                  V +  + R   + ++       D + +   +          S V + +A N++E
Sbjct: 288  YTTSEKVFDVSFSRLTQLLEANHDYSQLDWQLSAKDK----------SKVVIWQALNQKE 337

Query: 370  EAISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
            E   +  A+R  L +  +      L+    +   ++     +F I   I    P+S    
Sbjct: 338  ELEHVTKAIREKLYQGYRYKDMLVLLGDVASYQLQIGPIFEKFEIPYYIGKQEPMSAHPL 397

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
               + SL            I  L+K  L      E  L + +  L    ++G        
Sbjct: 398  VQFVESLERGRRYNWRREDIVNLLKSGLFGRFQ-EGELDQLEQYLVFADIQGFTKFSRPF 456

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
             L S     +        +   +  +    ++L           +  L+T+         
Sbjct: 457  TLNSSRQYPL------PLLNQLRLAVVTPLQQLFKSQKQLGASLLDKLMTFFKTIQLADN 510

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              +++                  R+      EE  KT + +     +     K    + +
Sbjct: 511  FEALA---------------GSRREADREKDEEVWKTFTGILETFYQVFGQEKMTLADCL 555

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             +I   +     +        + I         +   +   GL+   +PK T     +S 
Sbjct: 556  ALIKMGMQTAHYRTVPATLDVVSIKSYDLVEPHSKPFVFAIGLSRSHFPKQTKNTSLISD 615

Query: 667  VMQ----------SDLNLKTAE--KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
              +            L++ + E  K   Q A     A  T+ L+ +      N     S 
Sbjct: 616  QERASINEQTASYQRLDVPSFENIKKNHQTALSLFNA-ATQELVLSLPTSLTNSSDDVSP 674

Query: 715  WLQRLLVLGGTDFFDNL------------------------------------------- 731
            +L+ L+ LG                                                   
Sbjct: 675  YLKELIALGVPVIEKGKNRLSHSAADIGNYKALLSRLVAINRQGIADDMTSEDRNFWTVA 734

Query: 732  -----KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                 ++     L       + T +P             QP + S S +    N+ Y  +
Sbjct: 735  LRYLKRRLADEQLSLPAFEHHLTTKPVAPEVIETRFPSQQPLSLSSSALTVFYNNQYKYF 794

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS--HFE 844
             + +L L         PD    G   H I   + K R N    +        ++    F+
Sbjct: 795  LKYVLGLQEPESIH--PDARIHGQYLHRIFELVTKDRSNAAFDQKLGAAIAAVNQQSAFQ 852

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
            +             +   I++S        Q  ++        ++A+    + + G  DR
Sbjct: 853  QVYQADAEGRYSLEVLKGIAYSTAPVLNLNQ-GMQVAKQEEAFELALGHQAL-IRGVIDR 910

Query: 905  IDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            ID L  G + I DYK+             + PQL    AALK         + +    Y+
Sbjct: 911  IDQLADGRLGIVDYKSSARVFDIGAFYNGLSPQLVTYLAALKNKG------QGLFGAMYL 964

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
             +++                D+L   + K L     +     + ++++      + + 
Sbjct: 965  HMQEPRLSLSDFK----VLDDQLVAAAYKELT-YKGIFLAQAKEYLANGSYHLNNTLY 1017


>gi|307708678|ref|ZP_07645141.1| ATP-dependent nuclease subunit B [Streptococcus mitis NCTC 12261]
 gi|307615252|gb|EFN94462.1| ATP-dependent nuclease subunit B [Streptococcus mitis NCTC 12261]
          Length = 1091

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 122/985 (12%), Positives = 255/985 (25%), Gaps = 155/985 (15%)

Query: 90  TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
            A  L+  +L   +S +  +              P  ++                     
Sbjct: 66  MARYLILNDLPAKIS-LDDIGLGMAFYRCLTELDPKDLRVYGA---------IKQDPQFI 115

Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
           + L D+   +   +  + DL +L +E             +  + Y  +        +   
Sbjct: 116 QQLIDLYHEMTKAQMSFVDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----GQLAQGS 167

Query: 210 YQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
               L+ A    +     T+  ++I G T       R++  +  H  G  ++ G      
Sbjct: 168 QLSHLIEAIENDKVSSDFTQIALVIDGFTRFSAEEERIVDLL--HAKGVEIVIGAYVSKK 225

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
                  +  S       +    H                           + Y ++   
Sbjct: 226 AYT----SPFSEGNLYQASVEFLHHLA-----------------FKYQTPAQDYSQTHEK 264

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--- 384
             SF         + D  E  +    +   ++ +     ++EE   +A ++R  L E   
Sbjct: 265 MDSFDKASRLLESSYDFSELSLEIDDRDRENLQIWSCLTQKEELELVARSIRQKLHENSN 324

Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K    L+    +    +K    ++ I   +     ++    +  + S+L        
Sbjct: 325 LSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQFVESILALKRYRFR 384

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L++  L                        + +  DI   +  +          
Sbjct: 385 QEDLINLLRTGL----------------------YTDLSQADIDAFEQYIRYLGINGLPA 422

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                 +S   + D      L   I+  +  L   +  K             +  VT   
Sbjct: 423 FQQAFTKSHHGKFDLGRLNALRLRIVTPLETLFASRKQKAENLLQKWNVFLKEGAVTKQL 482

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                  + L      E  K    +  +     +  + +  +++ ++   +     +   
Sbjct: 483 QDLTATMKVLEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIP 542

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
              +T+ +        L  D +   GL +   PK       L+   +  LN  T E    
Sbjct: 543 ATVNTVLVQSYDLIAPLTADFVYAIGLTQDNLPKIAQNTSLLTDEERQSLNQATEEGVQL 602

Query: 683 QAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLG-------- 723
             A       + + M +      + LI +     N   +  S +LQ L+  G        
Sbjct: 603 LIASSENLKKNRYTMLSLVNSARKQLILSSPSLFNESESKESAYLQELVSFGFSRREKRM 662

Query: 724 --------------------------GTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYK 755
                                     G              L     +KLD    +    
Sbjct: 663 SHKNLSKEDIGSYHSLLSSLVAYHQQGEMSETEQDLTFIKVLARVMGKKLDQQGLENPAL 722

Query: 756 RPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
              P                 Q    S S + +   + Y+ + R +L L      +  PD
Sbjct: 723 PTSPSSKPLAKDTLQALYPAEQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EELRLRPD 780

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHK 862
               G   H I    ++     +  +      Q    +  FE            + +   
Sbjct: 781 ARSHGNFLHRIFERALQLPNEDSFDKRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLD 840

Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVD 914
           ++ +   H  +   +IE I             + ++    + + G  DRID L   G + 
Sbjct: 841 VARTT-GHILRHNPAIETIKEESNFGGKEQAFIQLDNGRSVFVRGKVDRIDRLKADGAIG 899

Query: 915 ITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969
           + DYK+         Q       ++ QL    AALK                Y+ + +  
Sbjct: 900 VVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMYLEMAEPV 950

Query: 970 KIDCITNDKKKYSADELSEKSLKNL 994
           +             +       + L
Sbjct: 951 QSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|324991606|gb|EGC23539.1| exonuclease RexB [Streptococcus sanguinis SK353]
          Length = 1093

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 122/923 (13%), Positives = 255/923 (27%), Gaps = 137/923 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L       T  L + +  S
Sbjct: 113 QFIQQLMDLYHELKTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       A +   +     ++I G T        L+  +     G  ++ G   +
Sbjct: 166 SSQIAAFAQHILAGDTDEELENLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +               
Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAESYQVKPDYIPH------------A 261

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
               +F           D  E  +   +   S + +    N++EE   +A ++R  + + 
Sbjct: 262 EAEDAFGRISKILESRYDFSEPAVAVSETDRSRLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +         + I   +     ++       + SL         
Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDHYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       G+    ++   +  +          
Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDYFEQYLRFADIKGAGK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561
                  +   + D +    +   I+  +      ++   +      +           L
Sbjct: 420 LAKDFTANSQGKFDLDHLNHIRRRIMTPMQDFFKSRSQTASGLLAKFTEFVQIARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +   + ++      EE  K  S +  +  +  +  K    +++ +I   +     +  
Sbjct: 480 IALLQGDSQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALILSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN  T  +  
Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598

Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721
            Q A         +         T+ L+ +     N +    S +L  L           
Sbjct: 599 LQIASSENLKKNRYTALSLINSSTKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658

Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758
                                 L   +         Q +     R L           P+
Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718

Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               + QP   S S + +     YA + + +L+L     +   P
Sbjct: 719 ISKELKTESLQPETLQALYPQEQPLRLSASALNEYFLHQYAYFLKYVLRLQ--EEWTIHP 776

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFH 861
           D    G   H I  ++++   + +         +    ++ FE            R L  
Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLARAMEETSRETEFESIYSESGQTRFARQLLL 836

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913
             + +   H     S IE I             + +E    + ++G  DRID L K+  +
Sbjct: 837 DTARAT-GHVLAHPSGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKTESL 895

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+GD     E     ++ QL    AA++  +  Q D        Y+++      D
Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
            I   K   +  +   +S+K L 
Sbjct: 950 PIVALKDTKTLADAVNQSMKPLQ 972


>gi|328946441|gb|EGG40581.1| exonuclease RexB [Streptococcus sanguinis SK1087]
          Length = 1093

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 129/922 (13%), Positives = 253/922 (27%), Gaps = 135/922 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L       T  L E +  S
Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNEGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       A +   +     ++I G T        L+S +     G  ++ G   +
Sbjct: 166 SSQIAAFAQHILAGDTDEELADLALVIDGFTRFSAEEEYLVSLLHR--KGVEIIIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +              +
Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYIPHAEAEDAFGRISKI 273

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
           + S+      T  +  TD             S + +    N++EE   +A ++R  + + 
Sbjct: 274 LESRYDFSESTVSLSETDR------------SQLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                 EL          DI     L  D  A  +  
Sbjct: 382 LEDLLNLLKTGLYGD----------LTQEELDHFEQYLRFADIKGASKLAKDFTANSQGK 431

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
             +             L              L  +     +   + +++   +       
Sbjct: 432 FALDRLNHIRRRVMAPLQDFFKSRSQTASGLLAKFTEFVQAASLSDNLTALLQ------- 484

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                   +      EE  K  S +  +  +     K    +++ +I   +     +   
Sbjct: 485 -----GASQQEQERHEEVWKAFSHVLEQFAQVFVDSKVKLDDFLALILSGMLLSNYRTVP 539

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                + +        L    +   GL +  +PK       LS   ++ LN  T  +   
Sbjct: 540 ATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAEL 599

Query: 683 QAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV---------- 721
           Q A         +         T+ L+ +     N +    S +L  L            
Sbjct: 600 QIASSENLKKNRYTALSLINSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIVK 659

Query: 722 ---------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPKP 759
                                L   +         Q +     R L           P+ 
Sbjct: 660 KPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISMPRI 719

Query: 760 ---------------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                              + QP   S S + +     YA + + +L+L     +   PD
Sbjct: 720 SKVLETESLQPETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHPD 777

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHK 862
               G   H I  ++++   + +         +    ++ FE            R L   
Sbjct: 778 ARSHGIFLHRIFEKVLQDDSSADFDRRLARAMEETSRETEFESIYSESGQTRFARQLLLD 837

Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVD 914
            + +         S IE I             + +E    + ++G  DRID L K+  + 
Sbjct: 838 TARAT-GRVLAHPSGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKTESLG 896

Query: 915 ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
           + DYK+GD     E     ++ QL    AA++  +  Q D        Y+++      D 
Sbjct: 897 VVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----DP 950

Query: 974 ITNDKKKYSADELSEKSLKNLI 995
           I   K   +  +   +S+K L 
Sbjct: 951 IVALKDTKTLTDAVNQSMKPLQ 972


>gi|25027346|ref|NP_737400.1| putative helicase [Corynebacterium efficiens YS-314]
 gi|259506515|ref|ZP_05749417.1| helicase [Corynebacterium efficiens YS-314]
 gi|23492627|dbj|BAC17600.1| putative helicase [Corynebacterium efficiens YS-314]
 gi|259165935|gb|EEW50489.1| helicase [Corynebacterium efficiens YS-314]
          Length = 1024

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 130/1036 (12%), Positives = 281/1036 (27%), Gaps = 164/1036 (15%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL--PIIKSLGD 83
            ++  +++            +S+ I   +K A   LR E  E+      +   P+++S+  
Sbjct: 53   VSSLVIDTVVERIRQGWDPSSILIVAASKEAASRLRRELSELVSDLDYVSEGPMVRSVHS 112

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            +                       RL+  A    + R  L     D     P        
Sbjct: 113  LAFALIRDSCDEDV----------RLITGAEQDAVVRELLRGHADDDRGVWPPEQREGLR 162

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
              +  A+ L D +          +DL     +     W+ A +FL+   +          
Sbjct: 163  -MVGFARQLRDFLLRAVERGVGPDDLVRYGQQYNRPAWVSAGEFLREYQQIMRLAGSHSY 221

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
            ++S       +  A A    + T   + +  +    P +A L++        A++    D
Sbjct: 222  SASE-----LVTGALACGDPRTTYRGVFVDDAQHLDPKSAELITRFIPAAELAVI--AGD 274

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +            +N +               L   R        V+      
Sbjct: 275  PEQSVFHFRGANPDFLLDFEANRSIH-------------LGEGRRTPLISIAVTETASAH 321

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
            + +++ +       D  +                                IA+ +R +  
Sbjct: 322  NDLLADTVRRAHLLDGVDWSD-----------------------------IAVIVRSA-- 350

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND 442
                          +   V+  L   G+ + IS   + LS     + +   L A+ +   
Sbjct: 351  -------------GMIAPVRRVLLAAGVPVHISPTDVVLSEQRIVAAMILGLRALTEELT 397

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             + +  L+  P+         L R    L    +R + +   I  L+ L+         +
Sbjct: 398  PLELEDLLLGPIGG--ADPVTLRRLLRGLRQAEMRADGHRRAIEVLRGLL-----NTDAD 450

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
              +  + +    E  E    ++    + +       + +         +  +        
Sbjct: 451  EELLAFLTDRELELLERVRSVLRAGREAMAG----GSTEEILWAVWEATGLSSHLSAVSL 506

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                   +   +L         +  + +   T           + I  + +     + + 
Sbjct: 507  RGGAAGSQADRDLDAIMALFDAAGDYVERYPTAGIRSF----IVHISEQELPTGVRERRG 562

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---- 678
                 + +     +    +  +I+  + EG WP        L +    DL  +  +    
Sbjct: 563  VSPEAVTVTTAHATTGREWRHVIVAEVQEGSWPSLGETGTLLGQEELIDLLDENIDPDTI 622

Query: 679  -----KYIGQAAHDFEMANGT--RHLIYTR-SLRENNIPTIASRWLQRLLVLG------- 723
                   + +    F +A       L+ T  +  +++     SR+L+ L           
Sbjct: 623  ISRSVDRLAEERRLFHVATSRACDQLLVTAVNTPDSDEVREPSRFLEELAEAHRVEITHI 682

Query: 724  ---GTDFFDNLKKRGQCYL---DWTRKLDYTTKQP------------------HYKRPKP 759
               G       +  G   L       +L      P                      P  
Sbjct: 683  EGPGETPLAEPEVLGHRLLSVPALVAELRRVVTDPGELGSRRRQAARQLNRLAGAGIPGA 742

Query: 760  FPPLEAQPRT--------------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
             P      R                S S I+ L+N P      R      +    + P  
Sbjct: 743  DPDTWLALREPSTTAELIPEGRVWLSPSRIEALMNCPLRASLDR------LDSEDETPIA 796

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RGTL H     + +        +     + + +++ +  N+P          F +   
Sbjct: 797  MLRGTLVHAFAEAVARG------ADPERAGEMVTEAYMDLANVPSWSRETTEQDFRRTIT 850

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925
                  +  + + + +   +  ++ I S  + + G  DR++   +G + I D KTG    
Sbjct: 851  RTHTWLQTSRVTFDLVGTEMEVEVGI-STEVGIRGRMDRLERNHAGELVIVDLKTGR-QA 908

Query: 926  KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE 985
                      QL+    AL  G          A            +    +D K  +  +
Sbjct: 909  AVQKDMGEHAQLASYQLALSRGVLHGDRVEDPAPGETPEPVGGGVLVYPAHDAKGITTRD 968

Query: 986  LSEKSLKNLIEIVTLL 1001
             + K+ + L E+  LL
Sbjct: 969  QAAKTPEELDELAALL 984


>gi|257875816|ref|ZP_05655469.1| exonuclease RexB [Enterococcus casseliflavus EC20]
 gi|257809982|gb|EEV38802.1| exonuclease RexB [Enterococcus casseliflavus EC20]
          Length = 1205

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 112/947 (11%), Positives = 235/947 (24%), Gaps = 143/947 (15%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYG-MWWLLAADFLKIASKYWTERLVEL--N 203
               + L      + T     EDL A                 L    + + + L+E    
Sbjct: 121  GFIQQLLAFYQEMHTSRLGIEDLLAGGTAPSATQDEEKKYSELAKIFQRFEQELLERALQ 180

Query: 204  ASSPVGYQIALMR----------------AEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
               P+      +                          +    II+G +       +L+ 
Sbjct: 181  VEQPITLLTRFLEGSLLDDSPVEQAMPNAVSMNKAPDLSHALFIISGFSAFSTQEQQLIQ 240

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +  I L  LD   P        E  + +        T+ Q  L        +  
Sbjct: 241  VLMKKSHVIIDL-FLDRGYPQ-------ELPSPLNLFYEAGRTYYQ--LISFARENQVPI 290

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
               ++L             + +++   +T   +    +  +  +  K F  V  +   N 
Sbjct: 291  YLDQKLSVNQEVDKEAKGSMQQAYNEIETFWRQTQSQVNYQQQSSVKDFLAVWKVG--NP 348

Query: 368  REEAISIAIALRMSLDENKKKSALITADRNL--------ARRVKLELTRFGINIDISAGI 419
             EE   IA ++R  + + K+  AL   +  L         + +    T F I   I    
Sbjct: 349  EEEIRQIAASIRGMMSDKKRYPALRYREIQLLIAEPEIYHQYIPKIFTEFEIPFYIDEEQ 408

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL---------AKFGFPEKYLSRAKNA 470
             ++       L +             I  L++  L         A +        +  + 
Sbjct: 409  MMAQHPLVEFLNAFFACQSYGFRLNDILRLLRTELYLPAAYRSEADWLVGRDQFRKLVDI 468

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
             E  AL  +         +   L      +         +  + + +      V   L  
Sbjct: 469  TENKALAHDFQGASWTRNEDWELIEYLQSEEEQTDKVDLTAYTNQLRRAFKQDVADTLDW 528

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +T   T +         L  +   +                      E+  + L  L  +
Sbjct: 529  LTAARTNRDAVELLYRFLLNAGVEEQLRHWRDQAIQQGKLDQAR-NHEQAWQALMDLLDE 587

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
                      +   + D++   ++  T          + I     +R          GLN
Sbjct: 588  YAAIYGEESFDFALFEDVLLTGLENVTFGKIPTAIDQVNINRLDLARPKQAKITFAPGLN 647

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIY 699
            E   P+       L+   +   N     +   +            A    + + T HL  
Sbjct: 648  ETALPRKIENKTLLTNEERQHFNQLFNGEKYLRDTVVEGSVKEPFAFYSVLLSATEHLSL 707

Query: 700  TRSLRENNIPTI-ASRWLQRLL---------------------------------VLGGT 725
            + ++  +    I  S +L R++                                      
Sbjct: 708  SYAVNFDTQQNIKMSPYLDRVVKRLDVPLQERGILTLVSDPRNYVGSYRGLIYQINNLSQ 767

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP--------KPFPPLEAQPRTY------- 770
                N +   + +    + L  +       +          P P  +AQ           
Sbjct: 768  QAQKNKENLPRVWEQLKQALLRSEWTDLAAQVFESQTHQNIPIPLSQAQAAALYGPSIYS 827

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN--- 827
            S S+++      Y  +    L+L          +    G  FH+ +   +K  I +N   
Sbjct: 828  SISQMETFYQCEYKYFVSYGLRLKERE--VYGLNPAMTGEFFHDALDRFVKVLIAENISL 885

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS----------S 877
            T        Q ++   ++        ++            L    +  +           
Sbjct: 886  TQLTADQRVQFVEVVLQEIFGESRYRLLTSSARMNFIRYQLGKTIQRVAWALAKQGQKMH 945

Query: 878  IEKIFVNIPA----------KMAIE---SIGIHLTGFADRID--LLKSGFVD-ITDYKTG 921
                   +             + +       +++ G  DR+D    +      + DYK+ 
Sbjct: 946  FSPEKTEVLFGQIAGSNGINGIELPLSSGGKLYVRGKIDRVDTAKTEEEQWLSVVDYKSS 1005

Query: 922  DNP-KKETAQKLIDPQLSLEA--AALKAGSFSQIDCRKVANLFYIRL 965
                    A   +  QL      A   A         + A  +Y+ +
Sbjct: 1006 SRDFDLSEAYYGLAMQLITYLDVALTDAVQLVGSPNVRPAGAYYLHV 1052


>gi|300215189|gb|ADJ79605.1| ATP-dependent helicase/deoxyribonuclease subunit B (ATP-dependent
            helicase/nuclease rexB) [Lactobacillus salivarius CECT
            5713]
          Length = 1193

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 108/973 (11%), Positives = 263/973 (27%), Gaps = 148/973 (15%)

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            + + R +    ++L     +      ++  +S    +  +    D I+ ++      E+L
Sbjct: 100  MIVYRSLQEHSDELTIFKGEQTQPGFIAQLVSQLIELQQSCITYDDIERMK------ENL 153

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNA--SSPVGYQIALMRAEAEHLMKGTK 227
                              + I  + + +         +  +      ++ E       + 
Sbjct: 154  SQQDTAD-SAELEAKLHDIAIIYRDFMQMTDSKYLKPADILPSLTQYLQNE-----DLSN 207

Query: 228  GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
               II G +        ++S +        +   L+  +       +++K +    S  T
Sbjct: 208  SYFIIEGFSQFTAQEQAIISVLLQRAKEVRIDLILNRGVTDI--EDLSDKQSLFYRSERT 265

Query: 288  YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
            Y    Q +    +  L+                  R   +    L       + +  L+ 
Sbjct: 266  YYLLYQQARKAQVKILN-----------DVYPQELRVETLELQSLAKY---WKESTDLKP 311

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL 404
                      ++ +I+AD    E   IA  ++  +   D       L+T D N  R +  
Sbjct: 312  INVEKIGDNHNLQVIKADTRMTEIKEIATRIKQMVALKDYRYADFLLLTPDLNKYRNIIE 371

Query: 405  -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA-----KFG 458
                 + + I +     +       +LT+L N       ++ +  L+K  L         
Sbjct: 372  PIFNDYKVPIFVDLAKKMIDHPLVELLTALFNVKAHHYRYVDMMRLLKTELLIPKTEYGY 431

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA--TQKNNTHVPHWQSRLSEED 516
               K   +  +  E + L+        +     V  R         T V    ++     
Sbjct: 432  LEIKQFRQDLDLTENLILKFGLEGSQWLRKDDWVYYRFGSSDFGTQTDVQEKITKQVNVI 491

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            +     ++    + +      K         L  +   +  +       L++   +    
Sbjct: 492  RHYIKEILPPFFKQLDKAENGKEAAQILMNFLITNGVPEQLINWRNK-ALEQGDMVMADC 550

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             E+      +L  + ++T   +     ++++++    +G T +        + I  T  +
Sbjct: 551  PEQVWNLFCALMDEYVDTLGDLSFKEEDFLNLLQTGFEGATYRQVPSTLDQVIISETTAT 610

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-NLKTAEKYIGQAAH--------- 686
            ++ +     + G  + V P        L+ + +  +      EKY+   A          
Sbjct: 611  QMNDRKVTFIFGATDLVMPNRIQNTMLLTDMDRELVQGTLDDEKYLSDTAEGRMAAEPFM 670

Query: 687  -DFEMANGTRHLIYTRS-LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC------- 737
                       L ++      N      S ++ R++       ++   +           
Sbjct: 671  NYLAFMTPRERLYFSYPVAGVNEDGLRMSPYVNRIMKQFDLPLYEANSEPTLEDKKVLKF 730

Query: 738  ----YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------------------------- 768
                    +  +    +    K+P P        +                         
Sbjct: 731  VATKRTALSNLIGVARQAKGQKQPLPVMWRYVYQKLQEDATYRRLTRKLMAGIEYSNIPE 790

Query: 769  ---------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                             S S+ ++   + YA + +  LKL     F+      + G  +H
Sbjct: 791  RLKTEYAEKLYGKTLNTSVSKFEEFFKNHYAFFLKYGLKLKERDVFE--LSPANTGEFYH 848

Query: 814  NIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHS--- 866
              + +L+K                +   +          P   I+        I      
Sbjct: 849  MALDKLLKTLKQDKVSIADINKPQLDAYLQQVLGGMEQLPQFQILQSSNRMQFILKQLGA 908

Query: 867  ------FLEHEEKIQSSIEKIFVNIPAKMA-------------IESIGIHLTGFADRIDL 907
                  +  H +  ++ +  +   +                       +++ G  DRID 
Sbjct: 909  TVSQMGWALHNQGQRTKMRPLETEVLFGHVGTENGLKALTYDLGNGHKVNVRGKIDRIDQ 968

Query: 908  L--KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEA--------AALKAGSFSQIDCR 955
            +   +     I DYK+  +    + A   +  Q+              L   +  +I   
Sbjct: 969  MIIDNQRYLGIVDYKSSSHKFNYQDAYYGLALQMLTYLNAMLQNTDLLLDLNAGEEI--- 1025

Query: 956  KVANLFYIRLKQK 968
            K A   Y+ L+  
Sbjct: 1026 KPAGAVYMHLQNP 1038


>gi|255535481|ref|YP_003095852.1| hypothetical protein FIC_01342 [Flavobacteriaceae bacterium 3519-10]
 gi|255341677|gb|ACU07790.1| hypothetical protein FIC_01342 [Flavobacteriaceae bacterium 3519-10]
          Length = 911

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 165/450 (36%), Gaps = 48/450 (10%)

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
               +      +I +L++ ET+  + E    L ++G LE+RLLNF+ +IL   NEG  P  
Sbjct: 460  FPVSMETLEVLINQLVNSETIDFQGEPLEGLQVMGLLETRLLNFENIILLSANEGKLPLG 519

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRW 715
              +N +L   ++   NL T  +     A+ +           +   +L         SR+
Sbjct: 520  NTQNTYLPFDIRRHFNLHTFLENDSIYAYHYYRLIQESQNVHLLFNALNSGVNTGEKSRF 579

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            + ++ +        N+           + +         K PK    LEA     S S +
Sbjct: 580  ITQMEIEDRHHQITNVIIENAADPILQKPMHI------AKTPKVIEILEAWKARISASHL 633

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----KNTPE 830
               I +P   Y  +IL        +++  +   G L H  + ++ +K +      K+   
Sbjct: 634  TSYIYNPADFYLNKILNTREADEMEEELSQRSYGNLVHYALQDIYEKFVGKTLTVKDLDL 693

Query: 831  INHLMKQIIDSHFEKENLPPHIDI-----IWRHLFHKISHSFLEHEEKIQSSI---EKIF 882
             +  + + +D   EK N            I + +  ++    +E++ K+ +     E I 
Sbjct: 694  TDQNIVEALDHAIEKLNHQIEFYQNGMNFIHKSIAERVVRGVVEYDRKLVAGGNTLEIIG 753

Query: 883  VNIPAKMA---IESI---GIHLTGFADRIDLLKSGFVDITDYKTGD-------NPKKETA 929
            V      A   ++      +   GF DRID L +G V I D+KT          PKK   
Sbjct: 754  VEGKFDQAEYFLDEEKKDRVGFYGFIDRIDRL-NGTVRIIDFKTAKTKNLSISAPKKAED 812

Query: 930  QKLI-----------DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
            ++ +             QLS+ A ++   +       +     +  + +  +  CI  D 
Sbjct: 813  EEKLQRLFFREDYKQALQLSIYAYSVLKTNVLPDRSVQCGIWSFAEVNKGVQNLCIFGDY 872

Query: 979  KKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
                A+      +K +  ++  + N E  F
Sbjct: 873  DISEANLTLP--MKAVGNVILDILNPENEF 900


>gi|307706580|ref|ZP_07643387.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK321]
 gi|307618035|gb|EFN97195.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK321]
          Length = 1091

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 118/934 (12%), Positives = 245/934 (26%), Gaps = 151/934 (16%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                 + L ++   +   +  + DL +L +E             +  + Y  +      
Sbjct: 110 QDPQFIQQLIELYHEMTKAQMSFLDLESLADEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A    +     T+  ++I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFTQIALVIDGFTRFSAEEERIVDLLYG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS---LAKLLDFLDIKREDVKRLGNVSN 318
                           S    +S  +     Q S   L  L         D  +     +
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASVEFLHHLASKYQTPALDCSQTHEQMD 266

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                S ++  S+           D  E  +   +K   ++ +     ++EE   +A ++
Sbjct: 267 SFDKASRLLESSY-----------DFSELTLEVDEKDRENLQIWSCLTQKEELELVARSI 315

Query: 379 RMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
           R  L  N          L+    +    +K    ++ I   +     ++    +  + S+
Sbjct: 316 RQKLHANPNLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQFVESI 375

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L+          +  L++  L                        N +  DI   +  + 
Sbjct: 376 LSLKRYRFRQEDLINLLRTGL----------------------YTNLSQADIDAFEQYIR 413

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                          +S   + D      L   IL  +  L   +  K         +  
Sbjct: 414 YLGINGLPAFQQTFTKSHHGKFDLGRLNALRLRILAPLETLFASRKQKAENLLQKWNAFL 473

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +  VT            L      E  K    +  +     +  + +  +++ ++   +
Sbjct: 474 KEGAVTKQLQNLTTTMETLEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGM 533

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                +       T+ +        L  D +   GL +   PK       L+   +  LN
Sbjct: 534 SLSQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLN 593

Query: 674 LKTAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
             T +      A       + + M +      + L+ +     N   +  S +LQ L+  
Sbjct: 594 QATEDGAQLLIASSENLKKNRYTMLSLVNSARKQLVLSAPSLFNESESKESAYLQELVHF 653

Query: 723 G-----------------------------GTDFFDNLKKRGQCYL---DWTRKLDYTTK 750
           G                                    +  R Q         R +     
Sbjct: 654 GFSRKEKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDREQDLTFVKVLARVMGKKLD 713

Query: 751 QPHYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
           Q   + P                       Q    S S + +   + Y+ + R +L L  
Sbjct: 714 QQGLENPALPTSPSSKQLAKDTLQALYPADQEFYLSTSGLTEFYRNQYSYFLRYVLGLQ- 772

Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHID 853
               +  PD    G   H I    ++     +  +      Q    +  FE         
Sbjct: 773 -EELRLRPDARSHGNFLHRIFERALQLPDEDSFDQRLEQAIQETSQEREFEAIYQESLEA 831

Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA-------IESIGIHLTGFADRID 906
              + +   ++ +   H  +   +IE I                 +   + + G  DRID
Sbjct: 832 QFTKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKEQAFIQLDDGRSVFVRGKVDRID 890

Query: 907 LL-KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
            L   G + + DYK+         Q       ++ QL    AALK               
Sbjct: 891 RLKADGAIGVVDYKS----SLTQFQFSHFFNGLNSQLPTYLAALKREGEQNF-----FGA 941

Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            Y+ + +  +             +       + L
Sbjct: 942 MYLEMAEPVQSLLAVKSLAGAVVEASRSMKYQGL 975


>gi|253681891|ref|ZP_04862688.1| ATP-dependent nuclease subunit B [Clostridium botulinum D str. 1873]
 gi|253561603|gb|EES91055.1| ATP-dependent nuclease subunit B [Clostridium botulinum D str. 1873]
          Length = 1149

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 113/955 (11%), Positives = 250/955 (26%), Gaps = 144/955 (15%)

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIAS 192
            S L +  + AN      N++DII  ++  +    +L A L   +   +       +    
Sbjct: 118  SDLRIFATAANQEGFTNNISDIITELKRYDITPSELRASLNLIEEDEFLKDKITDISNIF 177

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            + + E L +    +       L+  + +   +     I I   +   P   ++   +   
Sbjct: 178  QEFEESLHKNYIDNEDEL--TLLCKKLDESERYNGAEIWIDEFSSFTPQQYKIFEKLIKK 235

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                 V   +D +      +                                        
Sbjct: 236  AKRINVTLCMDYYKEIDSTDVFAPTKNTEQKLIKILED---------------------- 273

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
             G   ++    +      F   +       +  +      +    +V +I A N   E  
Sbjct: 274  NGIAIDKPIILNNNNLDRFKDNEEMRFLEENYFKYPYKPYKDKTENVKIIRAVNPYSEIE 333

Query: 373  SIAIALRM---SLDENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSS 428
            +IA  +       D   ++ A+I+ + +   ++       + I   I     +       
Sbjct: 334  NIAKEIVKITKDTDIRYREIAVISRELDGYEKIVKTIFNEYEIPHFIDKKKEIDDNPLIV 393

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            ++TS++    K   + ++   +K  LA     +  L         +  +    S      
Sbjct: 394  LITSVIEISNKRWSYESMFRYLKTGLANIEKEDIDLLENYVLAYGIRGKNKWASIWEYGN 453

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
            +  +      +   +          +                            S   N 
Sbjct: 454  EENLEKINDIRVRVSEPLIKFYSKIKGK-----------TNAEEICTAVYNFLCSIEVNE 502

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            +I  W              E  +     + +    +  L  +++E     K    +++ I
Sbjct: 503  TIEKWVCRFKE--------EGNQQLVKEYSQIWNIVIELLDQVVEVFKEEKLELKDFVKI 554

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            ++       +         + +      R      L + G+N+G++P  +     LS   
Sbjct: 555  LSLGFKDHKMGLIPPSLDQVLVSAVERVRTHKIKLLYIIGVNDGIFPAISKNEGILSDSD 614

Query: 669  Q---SDLNLKTAEKY----IGQAAHDFEMAN-------------------GTRHLIYTRS 702
            +     + ++ AE        +    +                           +I TR 
Sbjct: 615  RGYLKKVGVEIAEDTKSKAFEEQYLIYRTLTITEKYLRLCYSIADYEGKALRPSIIITRF 674

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
                   T  S  +         +            +   R+ D   K   +        
Sbjct: 675  KALFPSITEESDNILEEEEKEDIELITREIPTFNTLVSVIRREDEKIKVNPFWSDVYKWY 734

Query: 763  LEAQPRT---------------------------------YSFSEIKQLINDPYAVYARR 789
             E                                      +S S +++    P+  Y + 
Sbjct: 735  SENPNWKEKVSTVFSAVSYTNAVNDISEEKIRKLYGNRLYFSVSRLEKYAQCPFGYYIKY 794

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-------PEINHLMKQIIDSH 842
             LK      F       D GT  H++I E  +     +              + +I+D  
Sbjct: 795  GLKAKERKLF--ALTPPDLGTFMHSVIDEFSEAVDKNSLKWYDIEKEWCKKTVSEIVDKK 852

Query: 843  FEK---ENLPPHIDIIWR-HLFHKISHSFLEH--EEKIQSSIEKIFVNIPA--------- 887
             E+             +      ++    +    E   +S  + I   I           
Sbjct: 853  AEESSRGIFSSSPRYKYFTERLKRVLIKTILVIIEHLKRSGFQPIGHEIGFGYEESYPPI 912

Query: 888  KMAI-ESIGIHLTGFADRIDLL----KSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEA 941
            ++ +     + L G  DR+D L    K  +  I DYK+G  +         +  QL    
Sbjct: 913  EIELSNGEKVKLIGRIDRVDKLDMENKD-YYRIIDYKSGNKDFSLSDVYYGLQLQLLTYL 971

Query: 942  -AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
             A L      +        + Y+++      D I   K+  S +E+ ++ +K L 
Sbjct: 972  DAILTNEEIKKKYPVVPGGVLYLKID-----DPIIKGKRNLSDEEIEDEIMKALK 1021


>gi|313837606|gb|EFS75320.1| UvrD/REP helicase [Propionibacterium acnes HL037PA2]
 gi|314927513|gb|EFS91344.1| UvrD/REP helicase [Propionibacterium acnes HL044PA1]
 gi|314972545|gb|EFT16642.1| UvrD/REP helicase [Propionibacterium acnes HL037PA3]
          Length = 1071

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 104/983 (10%), Positives = 259/983 (26%), Gaps = 120/983 (12%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
             +     T +A  EL         +   + P          + F   L+  Y     ++ 
Sbjct: 69   EILGLTFTNKATMELSERIESNLTRVGLLKPDQPRPTVATYDSFAGTLVGDYGAWDGINT 128

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIETE 162
               L+  AR   +    +  + K     + L         + LA  +A      D +   
Sbjct: 129  GAHLMTGARAYQLASEVVVGLDKAPLAATHLGPTPIAQAVVKLAAAMASHDASPDEVRKA 188

Query: 163  EKKWEDLHALKN--------EKYGMWWLLA---ADFLKIASKYWTERLVELNASSPVGYQ 211
            + +W  +                  W        +FL++    + E   E          
Sbjct: 189  DARWRQMLLDAPTKKGGGRYADIDTWLSRVDEREEFLELV-AAYQELKKERGLVEFGDRM 247

Query: 212  IALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPN-----GAIVLPG 261
            +  +     H       +     +++     +  A A +++ + + P+     G  V+  
Sbjct: 248  VQALHLVTHHPRVGEELRARYRVVLLDEYQDTSSAQADVLAALFSGPDSSHGMGHPVMAV 307

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
             D       W      +                 +  L        + +      S E+ 
Sbjct: 308  GDPLQAIYEWRGAAASNILEFHRRFPDKEWNPAQVLSLTTNRRCADQIINAANMASEELR 367

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
             R              D  +  + +  +        +V +    +  EE  + A  +  +
Sbjct: 368  ERLSSTMNFDNDAPAGDRADVAVGQPLVAPEGNRPGEVTVAAYPDWAEECRACADIVVEA 427

Query: 382  LDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
             +     +   +A++    +    +   L+   + + ++    L      +++ + L  +
Sbjct: 428  KERGIITHWSDAAILVRRNSDVADLYDALSTRDVPVRLANLSGLLRLPDIAMVVAHLRLL 487

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                D  A+ATL+  P    G  +  +                        ++ VL +  
Sbjct: 488  VDRQDDAAMATLLASPRLGLGTDDLAMVYR---------------------RARVLAKTR 526

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS--ISDWTK 555
             Q +       +  L +   E      + +   +  +     +  +  G+    +    +
Sbjct: 527  AQADGLDPDDVEVHLCDAVMERRPGGHERLQHALARVCAEIVDVEAHQGDSPDDLVLLIE 586

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                 + ++  D      +    +    L     +   +   +    I            
Sbjct: 587  AITGLVDDMAAD--DPHRSAARRDHLDALWDEIREARRSDPTMTTAGIVAWLAAEEDFGD 644

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS---------- 665
               +   +    + +     ++ L +  +++  + +GV+P   + + F S          
Sbjct: 645  GLARAATDDRDAVTVSTVHGAKGLEWPLVMIPDMAQGVFPSTASPDNFTSVAAVLPSFAR 704

Query: 666  --------------RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE---NNI 708
                             ++ +     +    +A   +      +  +     +       
Sbjct: 705  GDANDVNHPASGSVADAKAYVAALKEDSQWAEARLAYVALTRAKERLVVSWHKWSPYRKA 764

Query: 709  PTIASRWLQRLLVLGGTDFFD------NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
                 R+   L  + GT++ D      N  + G  +      +D+     +  +    P 
Sbjct: 765  GLEPGRYAGLLADMLGTEWPDFGERPNNDVQAGTSWPVIAEDVDHG-PIDNVYQSVDDPG 823

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI------------------PHFKKDPD 804
               +  T+       L +    +     + L                        +  P 
Sbjct: 824  QADRVNTWRSDADALLKDARRRIDLEDDVMLPPRLTTSQMVRLNANPRAFREELRRPMPR 883

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
              DRG+       E + +R+    P       +I +   E+++  P +           +
Sbjct: 884  PADRGSGIGTAFHEWVSRRLAPTAPIPLFDADEIAE--LEEDDFAPEVVAAEPGGAEGHA 941

Query: 865  HSFL--EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS--GFVDITDYKT 920
               L    EE        + +     M I      + G  D +       G   + D+KT
Sbjct: 942  LRSLCQAFEESRWVDATVLAIEKSFVMTIGQT--VVRGRLDAVVADPDHPGDELVIDWKT 999

Query: 921  GDNPKKETAQKLIDPQLSLEAAA 943
                  +        QLS+   A
Sbjct: 1000 SRPGSADP------LQLSIYRLA 1016


>gi|319947224|ref|ZP_08021458.1| exonuclease RexB [Streptococcus australis ATCC 700641]
 gi|319747272|gb|EFV99531.1| exonuclease RexB [Streptococcus australis ATCC 700641]
          Length = 1092

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 114/938 (12%), Positives = 253/938 (26%), Gaps = 133/938 (14%)

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            P+  L +           + L  +   +++ +    DL AL +++           L  
Sbjct: 97  MPDEELKVYARLKKDPQFIQQLIQLFHELQSAQMTASDLDALPDQEKRED-------LVH 149

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
             K   ++LV     S              +   +     ++I G T        L+  +
Sbjct: 150 ILKAVQDQLVAGAFESESKLASFASHLIKGDLDEELKDLALVIDGFTRFSAEEDYLVYLL 209

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
            +     I+          + +                     Q S+  LLD     +  
Sbjct: 210 HDKGVEIIIGAYASEKAYRSSFRE---------------GNLYQASVDFLLDLARTYQVT 254

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
              +G    + + R   I ++       D+  +D               V +   ++++E
Sbjct: 255 PSYVGQGKEDAFSRMTRILEARYDFTEVDVELSDQDR----------EAVEIWTCNHQKE 304

Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLH 426
           E  ++A ++R  L E    K   ++  D +  +        ++ I   +     ++    
Sbjct: 305 ELEAVARSIRQRLYEGARYKDIRVLLGDVDAYQLQLKTIFDQYQIPFYLGKSESMAQHPL 364

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              +  L            +  L+K  L                       G     DI 
Sbjct: 365 VQWVEYLDRLRRYRFLTEDVVNLLKTGL----------------------YGTLTREDID 402

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
             +  V                 +   + D E    +   ++  +      K+  +    
Sbjct: 403 HFEQYVRFAEIKGLAAFSRDFTANHQDKFDLERLNQIRQQVISPLQEFYKTKSQTSQGLL 462

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                 + +  +            +     +++  K+ S +  +  +    +K    +++
Sbjct: 463 KKFAQFFQEGQLAQNMQQLAGRGSEQEMERYDQVWKSFSHVLEQFAQVFEQMKVTLDDFL 522

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            I+   +   + +        + +        L+   +   GL +  +PK       L+ 
Sbjct: 523 SILLSGMLLASYRTVPATVDVVTVQSYDLIEPLSAPYVYAIGLTQERFPKIAKDQSLLTD 582

Query: 667 VMQSDLNLKTAEK-------YIGQAAHDFEMA----NGTRHLIYTRSLRENNIPTIASRW 715
             +  LN  + E+             + F         T+ L+ +  +  N +    S +
Sbjct: 583 EERQVLNQASDEQANLQIASQDNLRKNRFVALSLFNAATKQLVLSSPILVNEVDDKMSPY 642

Query: 716 LQRLLVLGGTDFFDNLKKRG--------QCYLDWTRKLDYTTKQPHYKRPKPFPP----- 762
           L  L          + K           Q  L    +L          + +         
Sbjct: 643 LLELTKAPLNLSVISKKATASSQDMGSYQALLARLIELHQGEIDQELSKEEATFWAVAIR 702

Query: 763 ----------------------------------LEAQPRTYSFSEIKQLINDPYAVYAR 788
                                              + Q  + S S +     + Y+ Y  
Sbjct: 703 VLRKKLASEDLHIPQISQNLTTKVLEDETLEALYPKGQALSLSASALNTYYQNQYSYYLH 762

Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKE 846
            +L L     +   PD    G   H I   ++K     +  E  +   +    ++ F   
Sbjct: 763 YVLGLQ--EEWHLRPDARSHGNFLHRIFERVLKDPSEGDFDERLNKAIRETSQETEFALL 820

Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAI-ESIGIHLT 899
                +    + L    + +           IE I             + + +   + + 
Sbjct: 821 YQENAMAAFSKELLLDTARAT-GRVLAHNDRIETIGEEALFGQADRPFLTLEDGRPLLVK 879

Query: 900 GFADRIDLLKS-GFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK- 956
           G  DRID L   G + + DYK+ +     E     ++ QL    +A+K   F   D  K 
Sbjct: 880 GKVDRIDRLSDTGALGVVDYKSSETKFNFEKFFNGLNSQLPTYLSAIKD--FQDFDPDKG 937

Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           +    Y+++     +   T          L  +  K L
Sbjct: 938 IFGAMYLQMTDPLVLLKDTKAVDDAVQAVLKTQQYKGL 975


>gi|306825213|ref|ZP_07458555.1| ATP-dependent nuclease subunit B [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432649|gb|EFM35623.1| ATP-dependent nuclease subunit B [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 1091

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 118/935 (12%), Positives = 251/935 (26%), Gaps = 153/935 (16%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                 + L ++   + T +  + D  +L +E             +  + Y  +      
Sbjct: 110 QDPQFIQQLIELYHEMTTAQMNFLDFKSLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A    +     ++  ++I G T       R++  +     G  ++ G
Sbjct: 162 QLAQRSQLSHLIEAIENDKVSSDFSQIALVIDGFTRFSAEEERVVDLLHR--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  T     Q S+ +    L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFTEGNLYQASV-EFFHHLGAK-------YQTVAQER 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +    K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELTLEVDDKDRENLQIWSCLTQKEELELVARSIRKK 318

Query: 382 LDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L ++ +        L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHDHPELSYKNFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTGL----------------------YTDLSQADIDSFEQYLRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                       +S   + D E    +   +L  +  L+  +  K        +  W+  
Sbjct: 417 INGLPAFQQTFTKSHHGKFDLERLNAIRLRVLTPLETLLASRKQKAENL----LQKWSIF 472

Query: 557 T-VTCLQNVCLDEHRKLPNLWFE---EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              T L          +  L  E   E  K    +  +     +  + +  +++ ++   
Sbjct: 473 LKNTALSKQMQGLTATMEALEQERQTEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSG 532

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           +     +       T+ +        L  D +   GL +   PK       L+   +  L
Sbjct: 533 MSLSQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDHLPKIAQNTSLLTDEERQSL 592

Query: 673 NLKTAEKYIGQAA-------HDFEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
           N  T E      A       + + M        + L+ +     N   +  S +LQ L+ 
Sbjct: 593 NQATEEGAQLLIASSENLKKNRYTMLSLVNAARKQLVLSAPSLLNENESKESAYLQELVS 652

Query: 722 LG----------------------------------GTDFFDNLKKRGQCYLDWT--RKL 745
            G                                  G              L     +KL
Sbjct: 653 FGFNRTEKKIHHKGLSKEDMGSYHSLLSSLVAYHQQGETSDTEQDLTFVKVLARVMGKKL 712

Query: 746 DYTTKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
           D            P                 +    S S + +   + Y+ + R +L L 
Sbjct: 713 DQKGLTNPAIPTSPSSKPLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQ 772

Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHI 852
                +  PD    G   H I    +K     +  +      +    +  FE        
Sbjct: 773 --EELRLRPDARSHGNFLHRIFERALKFPDEDSFDQRLEQAIKETSQEREFEAIYQESLE 830

Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRI 905
               + +   ++ +   H  +   +IE I             + ++    + + G  DRI
Sbjct: 831 AQFTKEVLLDVARTT-GHILRHNPAIETIQEEATFGGKDQAFIQLDNGRSVFVRGKVDRI 889

Query: 906 DLL-KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
           D L   G + + DYK+         Q       ++ QL    AALK              
Sbjct: 890 DRLKADGALGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FG 940

Query: 960 LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
             Y+ + +  +            A+       + L
Sbjct: 941 AMYLEMAEPVQSLLTVKSLAGAVAEASKSMKYQGL 975


>gi|328907789|gb|EGG27552.1| putative ATP-dependent DNA helicase [Propionibacterium sp. P08]
          Length = 1071

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 104/983 (10%), Positives = 258/983 (26%), Gaps = 120/983 (12%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
             +     T +A  EL         +   + P          + F   L+  Y     ++ 
Sbjct: 69   EILGLTFTNKATMELSERIESNLTRVGLLKPDQPRPTVATYDSFAGTLVGDYGAWDGINT 128

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIETE 162
               L+  AR   +    +  + K     + L         + LA  +A      D +   
Sbjct: 129  GAHLMTGARAYQLASEVVVGLDKAPLAATHLGPTPIAQAVVKLAAAMASHDASPDEVRKA 188

Query: 163  EKKWEDLHALKN--------EKYGMWWLLA---ADFLKIASKYWTERLVELNASSPVGYQ 211
            + +W  +                  W        +FL++    + E   E          
Sbjct: 189  DARWRQMLLDAPTKKGGGRYADIDTWLSRVDEREEFLELV-AAYQELKKERGLVEFGDRM 247

Query: 212  IALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPN-----GAIVLPG 261
            +  +     H       +     +++     +  A A +++ + + P+     G  V+  
Sbjct: 248  VQALHLVTHHPRVGEELRARYRVVLLDEYQDTSSAQADVLAALFSGPDSSHGMGHPVMAV 307

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
             D       W      +                 +  L        + +      S E+ 
Sbjct: 308  GDPLQAIYEWRGAAASNILEFHRRFPDKEWNPAQVLSLTTNRRCADQIINAANMASEELR 367

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
             R              D  +  + +  +        +V +    +  EE  + A  +  +
Sbjct: 368  ERLSSTMNFDNDAPAGDRADVAVGQPLVAPEGNRPGEVTVAAYPDWAEECRACADIVVEA 427

Query: 382  LDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
             +     +   +A++    +    +   L+   + + ++    L      +++ + L  +
Sbjct: 428  KERGIITHWSDAAILVRRNSDVADLYDALSTRDVPVRLANLSGLLRLPDIAMVVAHLRLL 487

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                D  A+ATL+  P    G  +  +                        ++ VL +  
Sbjct: 488  VDRQDDAAMATLLASPRLGLGTDDLAMVYR---------------------RARVLAKTR 526

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS--ISDWTK 555
             Q +       +  L +   E      + +   +  +     +  +  G+    +    +
Sbjct: 527  AQADGLDPDDVEVHLCDAVMERRPGGHERLQHALARVCAEIVDVEAHQGDSPDDLVLLIE 586

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                 + ++  D      +    +    L     +   +   +    I            
Sbjct: 587  AITGLVDDMAAD--DPHRSAARRDHLDALWDEIREARRSDPTMTTAGIVAWLAAEEDFGD 644

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS---------- 665
               +   +    + +     ++ L +  +++  + +GV+P     + F S          
Sbjct: 645  GLARAATDDRDAVTVSTVHGAKGLEWPLVMIPDMAQGVFPSTAGPDNFTSVAAVLPSFAR 704

Query: 666  --------------RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE---NNI 708
                             ++ +     +    +A   +      +  +     +       
Sbjct: 705  GDANDVNHPASGSVADAKAYVAALKEDSQWAEARLAYVALTRAKERLVVSWHKWSPYRKA 764

Query: 709  PTIASRWLQRLLVLGGTDFFD------NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
                 R+   L  + GT++ D      N  + G  +      +D+     +  +    P 
Sbjct: 765  GLEPGRYAGLLADMLGTEWPDFGERPNNDVQAGTSWPVIAEDVDHG-PIDNVYQSVDDPG 823

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI------------------PHFKKDPD 804
               +  T+       L +    +     + L                        +  P 
Sbjct: 824  QADRVNTWRSDADALLKDARRRIDLEDDVMLPPRLTTSQMVRLNANPRAFREELRRPMPR 883

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
              DRG+       E + +R+    P       +I +   E+++  P +           +
Sbjct: 884  PADRGSGIGTAFHEWVSRRLAPTAPIPLFDADEIAE--LEEDDFAPEVVAAEPGGAEGHA 941

Query: 865  HSFL--EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS--GFVDITDYKT 920
               L    EE        + +     M I      + G  D +       G   + D+KT
Sbjct: 942  LRSLCQAFEESRWVDATVLAIEKSFVMTIGQT--VVRGRLDAVVADPDHPGDELVIDWKT 999

Query: 921  GDNPKKETAQKLIDPQLSLEAAA 943
                  +        QLS+   A
Sbjct: 1000 SRPGSADP------LQLSIYRLA 1016


>gi|251764803|sp|B4U2H0|ADDB_STREM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
          Length = 1073

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 130/958 (13%), Positives = 264/958 (27%), Gaps = 137/958 (14%)

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
             E  L +             L ++   ++       DL  L   +         D + I 
Sbjct: 98   QEDELKVFHRLRTDQAFIAQLVELYKELQAANLTAFDLTTLDRPEKQE------DLITIM 151

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            +K   E+L+             L  A        +  +  ++I G T       +L++ +
Sbjct: 152  TKA--EQLIAQGDYDQSSRLAQLAEAIKSKSLDDELRQTVLVIDGFTRFSAEEEQLLALL 209

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                   ++      +I    +     K     +S        Q    K +         
Sbjct: 210  NEACEEIVIGA----YISQKAYRLAFTKGNLYEASLAFIQQLAQQFQTKPI--------- 256

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                  V +  + R   + ++       D + +   +          S V + +A N++E
Sbjct: 257  YTTSEKVFDVSFSRLTQLLEANHDYSQLDWQLSAKDK----------SKVVIWQALNQKE 306

Query: 370  EAISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
            E   +  A+R  L +  +      L+    +   ++     +F I   I    P+S    
Sbjct: 307  ELEHVTKAIREKLYQGYRYKDMLVLLGDVASYQLQIGPIFEKFEIPYYIGKQEPMSAHPL 366

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
               + SL            I  L+K  L      E  L + +  L    ++G        
Sbjct: 367  VQFVESLERGRRYNWRREDIVNLLKSGLFGRFQ-EGELDQLEQYLVFADIQGFTKFSRPF 425

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
             L S     +        +   +  +    ++L           +  L+T+         
Sbjct: 426  TLNSSRQYPL------PLLNQLRLAVVTPLQQLFKSQKQLGASLLDKLMTFFKTIQLADN 479

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              +++                  R+      EE  KT + +     +     K    + +
Sbjct: 480  FEALA---------------GSRREADREKDEEVWKTFTGILETFYQVFGQEKMTLADCL 524

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             +I   +     +        + I         +   +   GL+   +PK T     +S 
Sbjct: 525  ALIKMGMQTAHYRTVPATLDVVSIKSYDLVEPHSKPFVFAIGLSRSHFPKQTKNTSLISD 584

Query: 667  VMQ----------SDLNLKTAE--KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
              +            L++ + E  K   Q A     A  T+ L+ +      N     S 
Sbjct: 585  QERASINEQTASYQRLDVPSFENIKKNHQTALSLFNA-ATQELVLSLPTSLTNSSDDVSP 643

Query: 715  WLQRLLVLGGTDFFDNL------------------------------------------- 731
            +L+ L+ LG                                                   
Sbjct: 644  YLKELIALGVPVIEKGKNRLSHSAADIGNYKALLSRLVAINRQGIADDMTSEDRNFWTVA 703

Query: 732  -----KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                 ++     L       + T +P             QP + S S +    N+ Y  +
Sbjct: 704  LRYLKRRLADEQLSLPAFEHHLTTKPVAPEVIETRFPSQQPLSLSSSALTVFYNNQYKYF 763

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS--HFE 844
             + +L L         PD    G   H I   + K R N    +        ++    F+
Sbjct: 764  LKYVLGLQEPESIH--PDARIHGQYLHRIFELVTKDRSNAAFDQKLGAAIAAVNQQSAFQ 821

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
            +             +   I++S        Q  ++        ++A+    + + G  DR
Sbjct: 822  QVYQADAEGRYSLEVLKGIAYSTAPVLNLNQ-GMQVAKQEEAFELALGHQAL-IRGVIDR 879

Query: 905  IDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            ID L  G + I DYK+             + PQL    AALK         + +    Y+
Sbjct: 880  IDQLADGRLGIVDYKSSARVFDIGAFYNGLSPQLVTYLAALKNKG------QGLFGAMYL 933

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
             +++                D+L   + K L     +     + ++++      + + 
Sbjct: 934  HMQEPRLSLSDFKVLD----DQLVAAAYKELT-YKGIFLAQAKEYLANGSYHLNNTLY 986


>gi|124266477|ref|YP_001020481.1| DNA helicase/exodeoxyribonuclease V subunit B [Methylibium
           petroleiphilum PM1]
 gi|124259252|gb|ABM94246.1| DNA helicase/exodeoxyribonuclease V, subunit B [Methylibium
           petroleiphilum PM1]
          Length = 915

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 140/902 (15%), Positives = 256/902 (28%), Gaps = 98/902 (10%)

Query: 111 ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
            L R I  +  +     +D+    P +  +S A A WLA + A  I   ET         
Sbjct: 63  RLVREIAAFSRREALASRDVVVLLPFAQHLSLARAAWLALDHAPWIPRFETT-------- 114

Query: 171 ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
                            L          L     + P+     L     +   +  +G  
Sbjct: 115 -----------QTLQRSLGPPLPAAPGELAFDPVADPLQAAQLLREQVPDWPHRDPRG-- 161

Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
                             VA     A VL      +P A      EK+ ++ S  T    
Sbjct: 162 --------------FALAVARLNETAQVLARARLALPPAQRAAWLEKARSLLSGPTGPGQ 207

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF-----LPPDTSDMRNTDIL 345
             +      L++ +                   ++ +  S      L   +S+       
Sbjct: 208 QERALARLALEWSNTAATMGADALYALRPAAWVALRVGASDPLVESLLAASSEPVLWLDA 267

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405
           + + P ++     V + E D+  +EA   A  +   L + ++  AL+  DR L RRV+  
Sbjct: 268 DLRAPGLRSVPGAVQVSECDDFEDEAQRAAAQVLAHLAQGEQPVALVALDRVLVRRVRAL 327

Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
           L R  + +    G  LSTT   + +  LL A+        +   +    A         +
Sbjct: 328 LERQQVPVSDETGWKLSTTRAGATVMGLLRAVHPRAATDDLLDWLASAPAPVDGRAALDA 387

Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
             +                                    +   +       +  A+ L  
Sbjct: 388 AWRR---------------------------------DGITALRQVDEARLEPAALALWQ 414

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
             L    PL   +        +       +  +           + +  L    E    S
Sbjct: 415 QWLAIGEPLSATRRLALGEWLSRLREALLRAGLWESLLGDAAGRQVIDALRCRAEPPAGS 474

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
           +   +             +W+D +   +  E   P +  ++ + +     + L  F  ++
Sbjct: 475 AWGQQAARVRFDAD-GLRDWVDGVLEAVSFEPPSPDLGGAAPVILTPLARAMLRPFAAVV 533

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
             G +             L   + + L L ++ +        F        L      R+
Sbjct: 534 CPGADAAHLGALPKPQALLGDALAAALGLPSSAQRREHERRAFAQLLRVPQLTLLHRRRD 593

Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
              P  AS  L +L             + G         +      P    P   P    
Sbjct: 594 GAEPLQASPLLLQLQFDAREAV-----RSGGEPRTPVAVVPRPLAHPLPVAPALLPD--- 645

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
              + + +  + L   PY  +A+R+L L          D+ D GT  H ++ +  ++R  
Sbjct: 646 ---SLNATAYEALRACPYRFFAQRLLGLAEAEELDDAVDKRDYGTWLHAVLQDFHRQRQP 702

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE-HEEKIQSSIEKIFVN 884
               +   L+ +I  +            + +   F  +   +L     +       I   
Sbjct: 703 GAPQDDAALLLRIARARQALLARDDADFLPFAVWFEDLLPRYLAWWHAEEALGANVIDTE 762

Query: 885 IP---AKMAIESIGIHLTGFADRIDLLKS----GFVDITDYKTGDNPKKET--AQKLIDP 935
           +       A+ + G+ L G  DRID +      G   I DYKT           Q L D 
Sbjct: 763 LELLAQPPALAAAGLRLRGTLDRIDAVPGKGGHGAHRILDYKTSSETTLRERLRQPLEDT 822

Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
           QL   AA L A     +    V    Y+ L  +  +  + +     SA  L E    +  
Sbjct: 823 QLPFYAALLDAS--RGVPPGDV-QAAYLSLDGREGVKLLAHPDVAASAATLLEGIAADFT 879

Query: 996 EI 997
            +
Sbjct: 880 RL 881


>gi|296118827|ref|ZP_06837403.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM
            20306]
 gi|295968316|gb|EFG81565.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM
            20306]
          Length = 1057

 Score =  155 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 117/1105 (10%), Positives = 264/1105 (23%), Gaps = 212/1105 (19%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             +    V T    S     +   +L+            +P     + +   +K +   LR
Sbjct: 30   PDAGSYVVTGPAGSGLTSFLADTVLHHI------EQGQDPDS---ILVVSSSKESGARLR 80

Query: 62   SEFIEITGKK-----STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
             +              +   I++S+  +       D      L   ++  ++   +  L+
Sbjct: 81   EDITTRLAVANGQEFVSESAIVRSVHSLAFALLRLDSDEEIRL---ITGAEQDAVIRELL 137

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
                        D       +        +  A+ L D +      ++  + L AL  + 
Sbjct: 138  QGHV--------DNNAGQWPADIRPALGYVGFARQLRDFLLRAIERQQTPDSLIALGKQY 189

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST 236
                W  A  FL+   +      +    S      +  +              II+  + 
Sbjct: 190  SQPMWTAAGHFLREYEQV---MALSGMHSYSAAELVTQVLLREHLTQSHQWETIIVDEAQ 246

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
               P +  L+  +A+     +V+ G D +     +   T    +   +           L
Sbjct: 247  LLDPTSGELIRRLADTAK--LVVIGGDPNQAVFAFRGATTDFLDTFPAQHRIE--LPAPL 302

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
                       +  +   +V  +   R  +            +R++  L      +    
Sbjct: 303  RTPEPACVSIVDSERTQRDVLADFIRRRHLDDGVAWKDIACIVRSSGDLGPVRRTLLAAG 362

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
              V +   D    E   +A  L                                      
Sbjct: 363  VPVHINPTDVVLSEQRLVAATL-------------------------------------- 384

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
                             + A+        +  L+  P+                      
Sbjct: 385  ---------------LAVRALENPLPNKELEELLTGPIGGADPVGLRRLIRALRRWNPEA 429

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
            RG     DI++ + +    +                    K     ++  +      L  
Sbjct: 430  RGMDMLRDILEHEVIEDSLLEVLNKYE-------------KSTLERIIGILSAGREVLQK 476

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
            Y + +       + +D                 +   +L         +  +S+      
Sbjct: 477  YGSPEEVLWAIWAKTDLANRLRNSSLRGGATGSQADRDLDAMMALFDAAGDYSERRPGAD 536

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                 A     I  +++       +      + IL    +    FD++ + G  E  WP 
Sbjct: 537  L----AAFIDHITEQVLPTGVRDRRTAVPDAVSILTAHGAVGREFDSVAVVGAQESQWPA 592

Query: 657  NTAKNPFLSRVMQSDLNLKTAE---------KYIGQAAHDFEMAN---GTRHLIYTRSLR 704
                    ++    DL  +  +           + +    F +A      R L+      
Sbjct: 593  LGETGTIFAQEELIDLVDRGIDPSIPVNSISDRLHEERRLFHVATTRHTARMLLVAVDNP 652

Query: 705  ENNIPTIASRWLQRLLVLGGTDF-FDNLKKRGQCYLD-----WTRKLDYTTKQPHYKRPK 758
            + +     SR++       G       L +R +           R++             
Sbjct: 653  DGDEVAEPSRFIDEFANRPGHHRNLPELLQRLERQEAFRKQLLAREMGLEPPATPEAHEV 712

Query: 759  PFPPLEAQPRTYSFSEIKQLIN-------------------------------DPYAVYA 787
                   Q    S S     +                                DP   +A
Sbjct: 713  DKEIDPLQVSVLSVSAFIAQMRTVVGDPEATESARAQAARQLARLAEEGVPGADPSQWWA 772

Query: 788  RRILKLDFIPHFKKDPDRTD---------------------------RGTLFHNIITELI 820
             + +  + +         +                            RG L H  +  + 
Sbjct: 773  TQTVAEERVLTTNPRLSPSRIEALLKCPLNAMLSDAADNNSDKYHMVRGNLAHAYMEAIG 832

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
            +     +            +     +  P       R  F  +     +  ++ + ++E 
Sbjct: 833  R---GADEELARRETVAAFEQI---QTSPTWKRPQERADFEGLLQRTYQWIQETRDALEL 886

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDL--------LKSGFVDITDYKTGD-NPKKETAQK 931
            + V +   +  +  G+ ++G+ DR++          + G + + D KTG   P  E   +
Sbjct: 887  VDVEVRVSVETQP-GVRVSGYIDRLERARAEEGADTEEGGLRVIDLKTGSYKPSDEETSQ 945

Query: 932  LIDPQLSLEAAALKAGSF------------SQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
               PQL      L  G+                + R  A L +           I   ++
Sbjct: 946  H--PQLLAYQLVLAHGALRQDEQGTQVVSGEDGEVRDGATLVF----PGTDTVKIATAEQ 999

Query: 980  KYSADELSEKSLKNLIEIVTLLQNG 1004
                D    +  + L  ++  L   
Sbjct: 1000 ARKEDAELAEFAEKLPPLLDELAGP 1024


>gi|315613167|ref|ZP_07888077.1| ATP-dependent nuclease subunit B [Streptococcus sanguinis ATCC
           49296]
 gi|315314729|gb|EFU62771.1| ATP-dependent nuclease subunit B [Streptococcus sanguinis ATCC
           49296]
          Length = 1091

 Score =  155 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 108/921 (11%), Positives = 246/921 (26%), Gaps = 145/921 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                 + L ++   + T +  + DL +L +E             +  + Y  +      
Sbjct: 110 QDPQFIQQLVELYHEMTTAQISFLDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A    +     ++  ++I G T       R++  +       ++   
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFSQIALVIDGFTRFSAEEERVVDLLHRKSAEIVIGAY 221

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                  + ++                  +   +  + L  L  K            +  
Sbjct: 222 ASKKAYISPFS----------------EGNLYQASVEFLHHLGAK-------YQTPAQDR 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKIDSFDKASRLLESSYDFSELALDVDEKDRENLQVWSCLTQKEELELVARSIRQK 318

Query: 382 LDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L ++ +        L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHDHPELSYKNFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTGL----------------------YSDLSQADIDAFEQYLRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                +      +S   + D E    L   +L  +  L   +  K         +     
Sbjct: 417 INGLPSFQQTFTKSHHGKFDLERLNSLRLRVLAPLETLFASRKQKAENLLQKWNTFLKNA 476

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            ++      +     L      E  K    +  +     +  + +  +++ ++   +   
Sbjct: 477 ALSKQMQELIATMEALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLS 536

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
             +       T+ +        L  D +   GL +   PK       L+   +  LN  T
Sbjct: 537 QYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQAT 596

Query: 677 AEKYIGQAA-------HDFEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
            E      A       + + M        + L+ +     N      S +LQ L+  G +
Sbjct: 597 EEGAQLLIASSENLKKNRYTMLSLVNAARKQLVLSAPSLLNENERKESAYLQELVGFGFS 656

Query: 726 DFFDNLKKRGQC------------------------------------YLDWTRKLDYTT 749
                + ++                                            +KLD   
Sbjct: 657 RIEKKIHQKSLSKDDMGSYHSLLSSLVAYHQQTGSSENEQDVTFVKVLARVMGKKLDQKG 716

Query: 750 KQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                    P                 +    S S + +   + Y+ + R +L L     
Sbjct: 717 LTNPALPTSPSSKPLEKETLQALYPTNKEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EE 774

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIW 856
            +  PD    G   H I    +K        +      +    +  FE            
Sbjct: 775 LRLRPDARSHGNFLHRIFERALKLPAENPFDQRLEQAIKETSQEREFEAIYQESLEAQFT 834

Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL- 908
           + +   ++ +   H  +   +IE I             + ++    +H+ G  DRID L 
Sbjct: 835 KEVLLDVARTT-GHILRHNPAIETIQEEATFGGKDQAFIQLDNGRSVHVRGKVDRIDRLK 893

Query: 909 KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
             G + + DYK+         Q       ++ QL    AALK                Y+
Sbjct: 894 ADGALGVVDYKS----SLTQFQFPNFFNGLNSQLPTYLAALKGEGEQNF-----FGAMYL 944

Query: 964 RLKQKFKIDCITNDKKKYSAD 984
            + +  +            A+
Sbjct: 945 EMAEPVQSLLAVKSLAGAVAE 965


>gi|257866181|ref|ZP_05645834.1| exonuclease RexB [Enterococcus casseliflavus EC30]
 gi|257872512|ref|ZP_05652165.1| exonuclease RexB [Enterococcus casseliflavus EC10]
 gi|257800115|gb|EEV29167.1| exonuclease RexB [Enterococcus casseliflavus EC30]
 gi|257806676|gb|EEV35498.1| exonuclease RexB [Enterococcus casseliflavus EC10]
          Length = 1205

 Score =  155 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 111/947 (11%), Positives = 236/947 (24%), Gaps = 143/947 (15%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYG-MWWLLAADFLKIASKYWTERLVEL--N 203
               + L      + T     EDL A                 L    + + + L+E    
Sbjct: 121  GFIQQLLAFYQEMHTSRLGIEDLLAGGAAPSATQDEEKKYSELAKIFQRFEQELLERALQ 180

Query: 204  ASSPVGYQIALMR----------------AEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
               P+      +                          +    II+G +       +L+ 
Sbjct: 181  VEQPITLLTRFLEGSLLDDSPVEQAMPNAVSMNKAPDLSHALFIISGFSAFSTQEQQLIQ 240

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +  I L  LD   P        E  + +        T+ Q  L        +  
Sbjct: 241  VLMKKSHVIIDL-FLDRGYPQ-------ELPSPLNLFYEAGRTYYQ--LISFARENQVPI 290

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
               ++L             + +++   +T   +    +  +  +  K F  +  +   N 
Sbjct: 291  YLDQKLSVNQEVDKEAKGSMQQAYNEIETFWRQTQSQVNYQQQSSVKDFLAIWKVG--NP 348

Query: 368  REEAISIAIALRMSLDENKKKSALITADRNL--------ARRVKLELTRFGINIDISAGI 419
             EE   IA ++R  + + K+   L   +  L         + +    T F I   I    
Sbjct: 349  EEEIRQIAASIRGMMSDKKRYPTLRYREIQLLIAEPEIYHQYIPKIFTEFEIPFYIDEEQ 408

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL---------AKFGFPEKYLSRAKNA 470
             ++       L +             I  L++  L         A +        +  + 
Sbjct: 409  MMAQHPLVEFLNAFFACQSYGFRLNDILRLLRTELYLPAAYRSEADWLVGRDQFRKLVDI 468

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
             E  AL  +         +   L      +         +  + + +      V   L  
Sbjct: 469  TENKALAHDFQGASWTRNEDWELIEYLQSEEEQTDKVDLTAYTNQLRRAFKQDVADTLDW 528

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +T   T +         L  +   +            + +       E+  + L  L  +
Sbjct: 529  LTAARTNRDAVELLYRFLLNAGVEEQLRHWRDQAIQ-QRKLDQARNHEQAWQALMDLLDE 587

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
                      +   + D++   ++  T          + I     +R          GLN
Sbjct: 588  YAAIYGEESFDFALFEDVLLTGLENVTFGKIPTAIDQVNINRLDLARPKQAKITFAPGLN 647

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIY 699
            E   P+       L+   +   N     +   +            A    + + T HL  
Sbjct: 648  ETALPRKIENKTLLTNEERQHFNQLFNGEKYLRDTVVEGSVKEPFAFYSVLLSATEHLSL 707

Query: 700  TRSLRENNIPTI-ASRWLQRLL---------------------------------VLGGT 725
            + ++  +    I  S +L R++                                      
Sbjct: 708  SYAVNFDTQQNIKMSPYLDRVVKRLDVPLQERGILTLVSDPRNYVGSYRGLIYQINNLSQ 767

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP--------KPFPPLEAQPRTY------- 770
                N +   + +    + L  +       +          P P  +AQ           
Sbjct: 768  QAQKNKENLPRVWEQLKQALLRSEWTDLAAQVFESQTHQNIPIPLSQAQAAALYGPSIYS 827

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN--- 827
            S S+++      Y  +    L+L          +    G  FH+ +   +K  I +N   
Sbjct: 828  SISQMETFYQCEYKYFVSYGLRLKERE--VYGLNPAMTGEFFHDALDRFVKVLIAENISL 885

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS----------S 877
            T        Q ++   ++        ++            L    +  +           
Sbjct: 886  TQLTADQRVQFVEVVLQEIFGESRYRLLTSSARMNFIRYQLGKTIQRVAWALAKQGQKMH 945

Query: 878  IEKIFVNIPA----------KMAIE---SIGIHLTGFADRID--LLKSGFVD-ITDYKTG 921
                   +             + +       +H+ G  DR+D    +      + DYK+ 
Sbjct: 946  FSPEKTEVLFGQIAGSNGINGIELPLSSGGKLHVRGKIDRVDTAKTEEEQWLSVVDYKSS 1005

Query: 922  DNP-KKETAQKLIDPQLSLEA--AALKAGSFSQIDCRKVANLFYIRL 965
                    A   +  QL      A   A         + A  +Y+ +
Sbjct: 1006 SRDFDLSEAYYGLAMQLITYLDVALTDAVQLVGSPNVRPAGAYYLHV 1052


>gi|331266378|ref|YP_004326008.1| exonuclease RexB, AddB, ATP-dependent nuclease [Streptococcus
           oralis Uo5]
 gi|326683050|emb|CBZ00667.1| exonuclease RexB, AddB, ATP-dependent nuclease [Streptococcus
           oralis Uo5]
          Length = 1091

 Score =  155 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 125/978 (12%), Positives = 264/978 (26%), Gaps = 162/978 (16%)

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
           P  +++  +              P  ++                     + L ++   + 
Sbjct: 76  PAKTSLDDIGLGMAFYKCLAELDPKELRVYGA---------IKQEPQFIQQLIELYHEMT 126

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
           T +  + DL +L +E             +  + Y  +        +       L+ A   
Sbjct: 127 TAQMSFLDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----GQLAQGSQLAHLIEAIEN 178

Query: 221 H--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                  ++  ++I G T       R++  +     G  ++ G             +  S
Sbjct: 179 GKVSSDFSQLALVIGGFTRFSAEEERVVDLLHR--KGVEIVIG-------------SYAS 223

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
               +S        Q S+ + L  L  K            +   ++     SF       
Sbjct: 224 KKAYTSPFAEGNLYQASV-EFLHHLGAK-------YQTPAQDRSQTHEKIDSFDKASRLL 275

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-----KKSALIT 393
             + D  E  +   +K   ++ +     ++EE   +A ++R  L ++          L+ 
Sbjct: 276 ESSYDFSELTLEIDEKDRKNLQIWSCLTQKEELELVARSIRQKLHDHPELSYKHFRILLG 335

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              +    +K    ++ I   +     ++    +  + S+L           +  L++  
Sbjct: 336 DVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTG 395

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
           L                        + +  DI   +  +                +S   
Sbjct: 396 L----------------------YTDLSQADIDAFEQYLRYLGINGLPAFQQTFTKSHHG 433

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT-VTCLQNVCLDEHRKL 572
           + D E    L   +   + PL T   ++     NL +  W+     T L     D    +
Sbjct: 434 KFDLERLNALRLRV---LEPLETIFASRKQKAENL-LQKWSIFLKNTALSKQMQDLTATM 489

Query: 573 PNLWFE---EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
             L  E   E  K    +  +     +  + +  +++ ++   +     +       T+ 
Sbjct: 490 EALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVL 549

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA---- 685
           +        L  D +   GL +   PK       L+   + +LN  T E      A    
Sbjct: 550 VQSYDLIAPLTADFVYAIGLTQDHLPKIAQNTSLLTDEERQNLNQATEEGAQLLIASSEN 609

Query: 686 ---HDFEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF---------- 728
              + + M        + L+ +     N   +  S +L  L+  G               
Sbjct: 610 LKKNRYTMLSLVNAARKQLVLSAPSLLNENESKESAYLHELVSFGFRRREKTMNHKNLSK 669

Query: 729 ------DNLKKRGQCYLDWTR--------------------KLDYTTKQPHYKRPKP--- 759
                  +L      Y   +                     KLD            P   
Sbjct: 670 KDMGSYHSLLSSLVAYHQQSETNDTEQDLTFVKVLARVMGKKLDQKGLTNPALPTSPSSK 729

Query: 760 --------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                         +    S S + +   + Y+ + R +L L      +  PD    G  
Sbjct: 730 PLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EELRLRPDARSHGNF 787

Query: 812 FHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            H I    +K        +      +    +  FE            + +   ++ +   
Sbjct: 788 LHRIFEHALKLPAENPFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEVLVDVARTT-G 846

Query: 870 HEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYKTG 921
           H  +   +IE I             + ++    +H+ G  DRID L   G + + DYK+ 
Sbjct: 847 HILRHNPAIETIQEEATFGGKDQAFIQLDNGRSVHVRGKVDRIDRLKADGALGVVDYKS- 905

Query: 922 DNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
                   Q       ++ QL    AALK                Y+ + +  +      
Sbjct: 906 ---SLTQFQFSNFFNGLNSQLPTYLAALKGEGEQNF-----FGAMYLEMAEPVQSLLNVK 957

Query: 977 DKKKYSADELSEKSLKNL 994
                 A+       + L
Sbjct: 958 SLAGAVAEASKSMKYQGL 975


>gi|296536931|ref|ZP_06898961.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296262742|gb|EFH09337.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 292

 Score =  155 bits (390), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 75/320 (23%), Positives = 124/320 (38%), Gaps = 35/320 (10%)

Query: 7   NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
            ++ I    PF   +   +L     +       +PL L+  TI +PT+RA   LR  F+ 
Sbjct: 2   RLYEIPAHLPFLGTLAAGVLRWVGQD-------DPLSLSRTTILLPTRRAALALRESFLR 54

Query: 67  ITGKKSTILPIIKSLGDVVEEKFT-ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125
            +G ++ +LP + +L  +  ++     L +  +L P V+   R   L  L++   ++   
Sbjct: 55  ESGGRTLLLPRMHALSGLSTQEADELSLPVLLDLPPAVAPAVRHSVLTSLVMRLPSR--- 111

Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
                        P +P  A  LA  LA+ +D    E      L  L  E++   W +  
Sbjct: 112 ----------FGGPDTPEQAWRLATALAEWLDETALEGCDMARLETLVPEEFATHWQVTL 161

Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGS--TGSIPAT 242
            FL+     W   L           ++A +RA+A+   +   + P+I AG    G+IPA 
Sbjct: 162 TFLRGVLSAWEAWLAGQGLMDIGPRRVAALRAQADSWKREPPRDPVIAAGIGAGGTIPAA 221

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
           A L+  VA  P G +VL G        +W  I E             THP     +LL  
Sbjct: 222 AALLKVVAQMPQGCVVLHGAGEVKSDELWAAIGE-----------SPTHPLAGQVRLLSA 270

Query: 303 LDIKREDVKRLGNVSNEMYG 322
           +D    D++           
Sbjct: 271 MDATPRDLEPWPGCPAGDPA 290


>gi|259506514|ref|ZP_05749416.1| probable dna helicase II protein [Corynebacterium efficiens YS-314]
 gi|259165934|gb|EEW50488.1| probable dna helicase II protein [Corynebacterium efficiens YS-314]
          Length = 1067

 Score =  155 bits (390), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 112/1068 (10%), Positives = 266/1068 (24%), Gaps = 181/1068 (16%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV------------------EE 87
             V     T++A Q+L     +     +     I +L D+                    +
Sbjct: 54   QVLGLTFTRKAAQQLSQRIRQRLETLAG----IPTLRDLDPSGGIARSLQAITPTVSTYD 109

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
             +   LL  Y L  PV    RL+    L  I R  + +   +L      +          
Sbjct: 110  SYAGSLLREYGLLLPVEPSARLITQTELYHIARQVVDNYRGELTATQSPATVTEY----- 164

Query: 148  LAKNLADIIDIIETEEKKWEDLHAL--------------------KNEKYGMWW--LLAA 185
                L D++  ++      +++                         ++   W    +  
Sbjct: 165  ----LLDLVSEMDNHMVTPDEIREESQPFINLFEELPTHNGKDTPLPQEMARWRDTQITR 220

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIP 240
                   +   + L +    +         R  + H       +     +++     +  
Sbjct: 221  LQYLPLVEQLKQELHDRAVITFGEQMSKAARLASRHPQVGYSQRRRFRVVMLDEYQDTSH 280

Query: 241  ATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            +   L+ ++    + G  V    D       W   T  +      +              
Sbjct: 281  SQRVLLRSLFGGTDPGLTVTAVGDPMQAIYGWRGATAANLENFVGDFPV----------- 329

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            +          + L            + +             T  ++   P       +V
Sbjct: 330  ISLDARTDAPKRELTTSWRNPPEVLELANAVSREVLGPADAPTRTVQPLEPRPGAPTGEV 389

Query: 360  ALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISA 417
             +      +EE   +A  L+   D   +   +A++   R  +  +  EL   GI ++I  
Sbjct: 390  QIGWFATAQEERAFVADELKKYWDARSEKFTAAVLVRKRRHSEPMAAELRARGIPVEIVG 449

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA-------KFGFPEKYLSRAKNA 470
               L      + + ++   + +  D  A   ++  P         +           +  
Sbjct: 450  LSGLLDVPEVADMVAIATMLVRPQDNRAALRILGGPHVGLGIADIQVLQRRAANLAGRVR 509

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED-------------- 516
                  +       +  L + + D + T+               E               
Sbjct: 510  PGSPKEKEPLPEEPLERLAAQIADTVPTEPEEIVGLTDAVSDLGEATNFSLEGLRRLRRL 569

Query: 517  ----------------KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                             ++   + +        L       +   G + +  +       
Sbjct: 570  AAQLRHLRTNSLGHSVADIFADIEEVFGIRTEVLARENPRADGATGTVHLDRFADEVAAH 629

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII---------------ETGSCIKANAIEW 605
                  +          +E+G     +  +                 +  S + A+A  +
Sbjct: 630  SSVSLPELLDYFQLARDQEDGLEPGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADANTY 689

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                   +      P   +         L++  +     +     E      ++     S
Sbjct: 690  DAKAFTWLKNVKHIPSSLRGDAGEGSPELDTSGVENRRDLQAAEKEYTAEVRSSLAEENS 749

Query: 666  RVMQSDLNLKTAEKYIGQ---------------AAHDFEMANGTRHLIYTRSLRENN--- 707
            R+    + +  +E+ +                  AH   +       + T    E     
Sbjct: 750  RLFY--VGITRSERALMVTGSAIDGTTTRAKVPYAHLETLKATAPDAVVTWWEGEEADVE 807

Query: 708  ---IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY---KRPKPFP 761
                       +     +               +     +L            +R +   
Sbjct: 808  KLPAEEAMYPAVTIPPGVAEGAELVRATPSDASFDGGIEELWEREVTVLIDEHRRLQSPT 867

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                  R  + +++  L N+P    ARR+ +               RGT FH  + +   
Sbjct: 868  LEVEISRELTATDLVNLKNNPEQF-ARRLRRPVPFKPNTY----AKRGTQFHQWLEDRFG 922

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                 +  ++  + +++ +  FE+                          E   +     
Sbjct: 923  ASALLDEDQLPGMDEELSEQTFEELR--------------------AAFLESRWADRTPN 962

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
            +V  P ++ I      + G  D +         + D+KTG  P+       I  QL++  
Sbjct: 963  YVEHPFEVVI--GRHVIRGRMDAVFHEPDDTWLVVDWKTGQTPRGAEMDAAII-QLAVYR 1019

Query: 942  AALKAGSFSQIDCRKVANLF-YIRLKQKFKIDCITNDKKKYSADELSE 988
             A    S   ID ++V   F Y+     F+ D + +  +     + ++
Sbjct: 1020 IAWA--SLRGIDPQQVRGAFHYVAHNHTFEPDHLPDAGELALLLDGAQ 1065


>gi|149182416|ref|ZP_01860892.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. SG-1]
 gi|148849879|gb|EDL64053.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. SG-1]
          Length = 1163

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 97/915 (10%), Positives = 208/915 (22%), Gaps = 137/915 (14%)

Query: 156  IDIIETEEKKWEDLHALKNE-----KYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            +   +      E+L   +       +           L++    + E L           
Sbjct: 127  LTEFKRYCISPEELSEKQEGWGEGGQESKALADKLHDLQLIYDSFEENLS--GKYIDSED 184

Query: 211  QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
               L+              I I G     P    ++  + ++     +    +  +    
Sbjct: 185  YFTLLEESIGKSEFLQNAEIFIDGFHSFTPQEYAVIGKLMDYCPRVTIALTAETDLIPGE 244

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
             + +   ++               +L +L      + ED   LG  S     R      +
Sbjct: 245  QSDLFRMTSETYE-----------ALKELALTSRGEVEDKVVLGKTS-----RFQNKGLA 288

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD----ENK 386
             +  +          E          S + ++EA N R E   +A  +R          K
Sbjct: 289  HIEANFEKRPVMPFEEE---------SGMTILEASNRRAEIEGVAREIRRLARTESYRYK 339

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              + L+   +     ++     + I   I     +       ++ S L  +     +  +
Sbjct: 340  DMAVLVRNGQEYQDIIETVFYDYEIPYFIDQKRKMLNHPLIELIRSTLEIMNSNWRYEPV 399

Query: 447  ATLVKHPLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
               VK  L        + L    + LE   L               +  R    +     
Sbjct: 400  FRAVKTDLLFPYDRNPQQLREKMDKLENYVLAYGIQGDKWTKKDRWIYRRFRGLEQADMP 459

Query: 506  PHWQSRLSEEDKELAV---------------------LLVDHILQCITPLVTYKTNKNST 544
               + R  E +                           L + +   +  L      +   
Sbjct: 460  QTDKEREMEREINELRLFISAPILRFGRRLKKGKTGQDLCEILYLYLEELDIPAKLERLR 519

Query: 545  CGNLSISDW--TKLTVTCLQNVCLDEHRKLPNLWFEEE-----GKTLSSLFSKIIETGSC 597
                S  D    +        V     + +  L  EE         + +    +  +   
Sbjct: 520  LEAESRGDIISAREHDQAWNAVMDLLDQFVEILGDEEVTVKKFASIIDAGIESMRFSLVP 579

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLF---ILGTLESRLLNFDTLILGGLNEGVW 654
               + +   ++    +        I  +  +    I         + + L + GL     
Sbjct: 580  PAVDQVMIANLEQSRLSDLRAAFVIGVNDGVLPAKITEDGIFSDEDREKLAVSGLAIAPG 639

Query: 655  PKNTAKNP----------------------------FLSRVMQSDLNLKTAEKYIGQAAH 686
             K    +                              L       L+    +  I    +
Sbjct: 640  SKTRLLDEEFIAYKAFTTPSERLYVSYPIANEEGKALLPSPYIKRLSELCPQSEISLLVN 699

Query: 687  DFEMA--------NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
            D                ++  +                            D++ K     
Sbjct: 700  DPSELPKDEQLSYVCHPNVTISYLTSGLQAKKRGYHIEDFWWDAYNYYVSDSVWKG--RA 757

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                  L Y  K       +    L  +    S S ++     P++ +A   LKL     
Sbjct: 758  RHILSSLFYQNKGKKLTE-ETSQELYGEEILASVSRMEMFHGCPFSHFANHGLKLRERD- 815

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDSHFEKENL------- 848
                 +  D G +FH  +  + ++                 ++                 
Sbjct: 816  -IYRLEAPDIGDMFHAALKWISEEIDRNGFSWKQLTKTQCLELAREAVLSLAPKLQHQIL 874

Query: 849  -PPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPA--KMAIESIGIHLT---- 899
               +     +     +      +  E    S    + + +    K  +      L     
Sbjct: 875  LSSNRHHYIKKKLQDVIGRASLILSEHAKASGFAPVGLELGFGPKAELPPFAFTLKNGTK 934

Query: 900  ----GFADRID--LLKSGF-VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQ 951
                G  DR+D      G  + I DYK+             +  Q+      +   S   
Sbjct: 935  MALQGRIDRVDKAESDEGVYLRIIDYKSSARDLNLTEVYYGLSLQMLTYLDIVLTHSQKL 994

Query: 952  IDC-RKVANLFYIRL 965
            I      A +FY  +
Sbjct: 995  IGADADPAGVFYFHV 1009


>gi|222152847|ref|YP_002562024.1| ATP-dependent exonuclease subunit B [Streptococcus uberis 0140J]
 gi|251764630|sp|B9DRU9|ADDB_STRU0 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|222113660|emb|CAR41581.1| putative ATP-dependent exonuclease subunit B [Streptococcus uberis
            0140J]
          Length = 1086

 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 128/965 (13%), Positives = 265/965 (27%), Gaps = 156/965 (16%)

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV-ELNASS 206
              K L D+   +++      D+                D + I S    E L  +    S
Sbjct: 114  FIKQLVDLFKEMQSANLTIADIEM-------ENLARKEDLITIFSALSRELLRYDFQQMS 166

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
             +      +R+      +  K  +II G T        L+  +       ++   +    
Sbjct: 167  SLAVFQEAIRSGL-LDQELAKTVVIIDGFTRFSAEEESLIHQLHQKCQEIVIGTYISSKA 225

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +   T+ +    S +        Y +  L   L  ++        +S  +      
Sbjct: 226  MKQNF---TKGNLYEASIDFLRQLSVTYQVKSLY--LSGEKTFKNSFTTMSRLLE----- 275

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
                            D    ++   +   +DV + +  N++EE  +IA  +R  L+E  
Sbjct: 276  -------------SQYDYSLTELTISEDIKNDVQIWQQLNQKEEIENIARDIRQKLNEGY 322

Query: 387  KKSALITADRNLARRVKL---ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
            +   ++    ++            ++ I   +     +S       + SL N        
Sbjct: 323  RYKDILVLLGDVEAYQLQVGPIFDKYDIPYYLGKAESMSHHPLVQFMDSLENCRRYNWRK 382

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
              I  L+K  +                 E        N  DI    +         K+ T
Sbjct: 383  EDIINLLKSRMLGDFTIR----------ECDQFESYLNYADINGFTAF-------SKDFT 425

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL-TVTCLQ 562
                 Q      D +   L+  ++   +      +  K S   N  +   + +  V+  Q
Sbjct: 426  ANTFNQKNEKGYDLDKINLIRKYLFSHLNQFFKSRAQKGSNILNHFLQFLSDIDFVSSFQ 485

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
             +   +         EE  K+ +S+                  + +I   +     +   
Sbjct: 486  RLSQKQSALQQEKD-EEVWKSFTSILESFYNIFKDETLTQELTLMLIKSAMQAADYRVVP 544

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                 + +         +   +   GL    +PK   +   +S   ++     T EK+  
Sbjct: 545  ATLDVVSVKSYDLVEPHSKSLVYALGLTRTHFPKTVQQTGLISDQERAK----TNEKWDS 600

Query: 683  QAAHD-----------FEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLG---- 723
                D           +         T  L+ +  +  N +   AS +L+ L   G    
Sbjct: 601  HHRFDISSIENSKKNHYTALSLFNAATDKLVLSYPMVLNEVVEEASPYLKLLHSFGIPIV 660

Query: 724  -----------------------------GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                                              +  ++    +L  +R L         
Sbjct: 661  EKQKNTFSDLENGIGNYKSLLSQWIALNQEPLTEELYQEEKSFWLVMSRYLKKQLAAKKL 720

Query: 755  KRPK---------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
              P+                    + QP + S S +    ++ Y  + + +L L  +   
Sbjct: 721  TFPEQKSHLATSRLSPEVLAIKYPDHQPLSLSSSALTVYHDNQYKYFLQYVLGLQELESI 780

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWR 857
               PD    GT  H +   ++  + +    +      Q    +  F+             
Sbjct: 781  H--PDARHHGTYLHRVFEYVVDDQRSIPFDDKIEEAIQRTNQERLFQTYYQSDAESRFSL 838

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFV---NIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914
             L   I+ S           I    V       ++  +   + + G  DRID L  G + 
Sbjct: 839  SLLEDIAKST-----ASIFPITPTKVLSQEERFQLHFDEK-VRVNGIIDRIDQLDDGSIG 892

Query: 915  ITDYKTGDNP-KKETAQKLIDPQLSLEAAAL-KAGSFSQIDCRKVANLFYIRLKQKFKID 972
            I DYK+             ++ QL     AL        +   ++    Y+ +      D
Sbjct: 893  IVDYKSSQTVFDIGKFYNGLNSQLPTYLEALNTREKSKDMPP-QLFGAMYLHM-----QD 946

Query: 973  CITNDKKKYSADELSEKSLKNLIEIVTL---LQNGEQPFISHLRLSEKSNIQS------- 1022
               +  +    D+   K ++ L   +T        E+  ++      KSN+ S       
Sbjct: 947  PKMDLNEFKLFDD---KVVEKLYSRLTYKGIFLEREKEHLASGAYQMKSNLYSEEELRNL 1003

Query: 1023 -EYDH 1026
             +Y+ 
Sbjct: 1004 LDYNQ 1008


>gi|325690486|gb|EGD32489.1| exonuclease RexB [Streptococcus sanguinis SK115]
          Length = 1093

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 120/923 (13%), Positives = 255/923 (27%), Gaps = 137/923 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L       T  L + +  S
Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       A +   +     ++I G T        L+  +     G  ++ G   +
Sbjct: 166 SSQIAAFAQHILAGDTDEELETLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +   G          +
Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISHAGAEDAFGRISKV 273

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
           + S+        ++  TD             S + +    N++EE   +A ++R  + + 
Sbjct: 274 LESRYDFSEQAVEVSETDR------------SQLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L                       G+    ++   +  +          
Sbjct: 382 LEDLLNLLKTEL----------------------YGDLAQEELDHFEQYLRFADIKGAGK 419

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN-STCGNLSISDWTKLTVTCL 561
                  +   + D +    +   ++  +      ++          +           L
Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTTSGLLAKFTEFVQAARLSDNL 479

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +   E ++      EE  K  S +  +  +  +  K    +++ +I   +     +  
Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALILSGMLLSNYRTV 538

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +        L    +   GL +  +PK       LS   ++ LN  T  +  
Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRAWLNDATDSQAE 598

Query: 682 GQ---------AAHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721
            Q           +         T+ L+ +     N +    S +L  L           
Sbjct: 599 LQIVSSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658

Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758
                                 L   +         Q +     R L           P+
Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718

Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               + QP   S S + +     YA + + +L+L     +   P
Sbjct: 719 ISKELKTESLQLETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861
           D    G   H I  ++++   + +         +      E E++          R L  
Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLL 836

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913
             + +         + IE I             + +E    + ++G  DRID L K   +
Sbjct: 837 DTARATGRV-LAHPTGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKIESL 895

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYK+GD     E     ++ QL    AA++  +  Q D        Y+++      D
Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949

Query: 973 CITNDKKKYSADELSEKSLKNLI 995
            I   K   +  +   +S+K L 
Sbjct: 950 PIVALKDTKTLSDAVNQSMKPLQ 972


>gi|227891361|ref|ZP_04009166.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus salivarius
            ATCC 11741]
 gi|227866939|gb|EEJ74360.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus salivarius
            ATCC 11741]
          Length = 1193

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 112/973 (11%), Positives = 265/973 (27%), Gaps = 148/973 (15%)

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            + + R +    ++L     +      ++  +S    +  +    D I+ ++      E+L
Sbjct: 100  MIVYRSLQEHSDELTIFKGEQTQPGFIAQLVSQLIELQQSCITYDDIERMK------ENL 153

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNA--SSPVGYQIALMRAEAEHLMKGTK 227
                              ++I  + + +         +  +      ++ E       + 
Sbjct: 154  SQQDTAD-SAELEAKLHDIEIIYRDFMQMTDSKYLKPADILPSLTQYLQNE-----DLSN 207

Query: 228  GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
               II G +        ++S +        +   L+  +       +++K +    S  T
Sbjct: 208  SYFIIEGFSQFTAQEQAIISVLLQRAKEVRIDLILNRGVTDI--EDLSDKQSLFYRSERT 265

Query: 288  YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
            Y    Q +    +  L+                  R   +    L       + +  L+ 
Sbjct: 266  YYLLYQQARKAQVKILN-----------DVYPQELRVETLELQSLAKY---WKESTDLKP 311

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL 404
                      ++ +I+AD    E   IA  ++  +   D       L+T D N  R +  
Sbjct: 312  INVEKIGDNHNLQVIKADTRMTEIKEIATRIKQMVALKDYRYADFLLLTPDLNKYRNIIE 371

Query: 405  -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA-----KFG 458
                 + + I +     +       +LT+L N   +   ++ +  L+K  L         
Sbjct: 372  PIFNDYKVPIFVDLAKKMIDHPLVELLTALFNVKARHYRYVDMMRLLKTELLIPKTEYGY 431

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA--TQKNNTHVPHWQSRLSEED 516
               K   +  +  E + L+        +     V  R         T V    ++     
Sbjct: 432  LGIKQFRQDLDLTENLILKFGLEGSQWLRKDDWVYYRFGSSDFGTQTDVQEKITKQVNVI 491

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            +     ++    + +      K         L  +   +  +       L++   +    
Sbjct: 492  RHYIKEILPPFFKQLDEAENGKEAAQILMNFLITNGVPEQLINWRNQ-ALEQGDMVMADR 550

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             E+      +L  + ++T   +     ++++++    +G T +        + I  T  +
Sbjct: 551  PEQVWNLFCALMDEYVDTLGDLSFREEDFLNLLQTGFEGATYRQVPSTLDQVIISETTAT 610

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-NLKTAEKYIGQAAH--------- 686
            ++ +     + G  + V P        L+ + +  +      EKY+   A          
Sbjct: 611  QMNDRKVTFIFGATDLVMPNRIQNTMLLTDMDRELVQGTLDDEKYLSDTAEGRMAAEPFM 670

Query: 687  -DFEMANGTRHLIYTRS-LRENNIPTIASRWLQR--------LLVLGGTDFFDN---LKK 733
                       L ++      N      S ++ R        L    G    ++   LK 
Sbjct: 671  NYLAFMTPKERLYFSYPVAGVNEDGLRMSPYVNRIMKQFDLPLYEANGEPTLEDKKVLKF 730

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------------------------- 768
                    +  +    +    K+P P        +                         
Sbjct: 731  VATKRTALSNLIGVARQAKGQKQPLPIMWRYIYQKLQEDATYRRLTRKLMAGIEYSNIPE 790

Query: 769  ---------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                             S S+ ++   + YA + +  LKL     F+      + G  +H
Sbjct: 791  RLKTEYAEKLYGKTLNTSVSKFEEFFKNHYAFFLKYGLKLKERDVFE--LSPANTGEFYH 848

Query: 814  NIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHS--- 866
              + +L+K                    +          P   I+        I      
Sbjct: 849  MALDKLLKTLKQDKVSIADINKPQFDSYLQQVLGGMEQLPQFQILQSSNRMQFILKQLGA 908

Query: 867  ------FLEHEEKIQSSIEKIFVNIPAKMA-------------IESIGIHLTGFADRIDL 907
                  +  H +  ++ +  +   +                       +++ G  DRID 
Sbjct: 909  TVSQMGWALHNQGQRTKMRPLETEVLFGHVGTENGLKALTYDLGNGHKVNVRGKIDRIDQ 968

Query: 908  L--KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEA--------AALKAGSFSQIDCR 955
            +   +     I DYK+  +    + A   +  Q+              L   +  +I   
Sbjct: 969  MIIDNQRYLGIVDYKSSSHKFNYQDAYYGLALQMLTYLNAMLQNTDLLLDLNAGEEI--- 1025

Query: 956  KVANLFYIRLKQK 968
            K A   Y+ L+  
Sbjct: 1026 KPAGAVYMHLQNP 1038


>gi|227872192|ref|ZP_03990559.1| ATP-dependent deoxyribonuclease subunit B [Oribacterium sinus F0268]
 gi|227841975|gb|EEJ52238.1| ATP-dependent deoxyribonuclease subunit B [Oribacterium sinus F0268]
          Length = 1162

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 121/933 (12%), Positives = 243/933 (26%), Gaps = 146/933 (15%)

Query: 156  IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
            I      +   EDL     +            L    + +   L      +  G     +
Sbjct: 129  ISECMQYKVSPEDLRKCAEKSKRSITRAKFLDLAYIYEEFLLYLSRTGRITEEGLADQGI 188

Query: 216  RAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTVANHPN---------GAIVLPGLDCH 265
             A         K  I I  G TG  P     +  +              G  +    +  
Sbjct: 189  SAL--WKDNTLKDSILIFDGFTGFTPIQLLCIEVLMEKAGELYFSLEFSGKNISALGNGK 246

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
               +++    E    +              L+             +       E      
Sbjct: 247  KRESLFYLTEEAIKELYHRGEKLGVEILSPLSLNEIDSRTGEARPEGALLPRFEKIPALQ 306

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----------DVALIEADNEREEAISI 374
             + + FL  +  +    +    K  ++ K               +++IEA N   E    
Sbjct: 307  TLVEGFLQGENKESGTKEEQSPKTESMDKSKPYTGGVYPSLPHGISVIEAANISREVEEA 366

Query: 375  AIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSIL 430
               +R  ++E     ++  ++  D  L R     +  +F I + +   I L  +  S +L
Sbjct: 367  CSHIRYLVEERGYRYQEIGVVLPDVELYRDAFFQQGRKFAIPLFLEEDIKLFDSPFSKVL 426

Query: 431  TSLLNAIFKLNDFMAIATLVK-HPLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDL 488
             S L  + K   + +    ++  P               +        +G K       L
Sbjct: 427  RSALEVMEKGLLYDSFFRYLRAFPYRGMEEEDRIDALENEARA-----KGLKGKSAFRSL 481

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                    A    +    +  S   +E  E      + ++            KN   G  
Sbjct: 482  FQEESLLEAEALFSLLEENEGSHSLKERIESLESFTEKLMALFQLEEEAIFLKNE--GMD 539

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            S+S   + +V+ +Q +                        SK+ E    I  N  E+   
Sbjct: 540  SLSQSLERSVSQIQLL-----------------------LSKMKEGLGEIPVNKKEFSAF 576

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS--- 665
                +  E ++     +  + +     SR  N    +  G N G+ P    K    +   
Sbjct: 577  FDMALSLEKLRQIPATNDQVLVGDLTRSRFHNPKAFLFLGFNAGLIPLPPKKKSLFTEEE 636

Query: 666  ----RVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQ--- 717
                R     L+    E+   Q  + +      +  L  +  LR        S  LQ   
Sbjct: 637  KSFLRQEHCTLSPLAWEESYIQEFYLYHAFLSPKEELYLSYPLRIPKGRGGISPILQEAL 696

Query: 718  ------------------------------RLLVLGGTDFFDNLKKRGQCYLDW------ 741
                                           L  L   +     ++    Y         
Sbjct: 697  RLFPKLKIRKLEREIQEMQSFSQAKDSLSKELPKLCKKEVLFRSEEEVLPYFHLESFQLL 756

Query: 742  ------------TRKLDYTTKQPHYKRP---KPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                          KL       +   P   +    L  +    S S ++ L    +  +
Sbjct: 757  HSLWQKEEYKKDLEKLLEAIFWENRHLPLSKELSKGLYGEKIRGSVSRLEGLNRCAFFHF 816

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIIT--ELIKKRINKNTPEINHLMKQIIDSHFE 844
             R  L L      + +    D G L+H ++       K        ++   ++ ++    
Sbjct: 817  LRYGLHLQERK--EAEIQAFDLGNLYHKLVESFFKKLKEEKLKGEVLSEHFQEYLNFAIA 874

Query: 845  KENLPPHI--------DIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIES 893
            +    P          +  + H F + + + L    + Q      +   +        ++
Sbjct: 875  ESEQDPEFAPFLEGGRNQYFLHKFKENAKTIL-WVLERQLSGGDFQVEALERDFHYESDT 933

Query: 894  IGIHLTGFADRIDLLKSGF----VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS 948
            +     G  DR+D          + + DYK+G+     +  +  +  QL L  + L    
Sbjct: 934  LSF--RGRVDRVDSYLDEEKNYYLKVLDYKSGNTDFSLDLLKAGLQIQLPLYLSILLEEE 991

Query: 949  FSQIDC--RKVANLFYIRLKQKFKIDCITNDKK 979
              +        A LFY  +           +++
Sbjct: 992  RKRHPDYKLHPAGLFYFTMDNPSLSFKGQTEEE 1024


>gi|332981095|ref|YP_004462536.1| hypothetical protein Mahau_0501 [Mahella australiensis 50-1 BON]
 gi|332698773|gb|AEE95714.1| hypothetical protein Mahau_0501 [Mahella australiensis 50-1 BON]
          Length = 854

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 71/608 (11%), Positives = 174/608 (28%), Gaps = 56/608 (9%)

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            +   +        I  + +  +  +     +  R +            ++  +  +   +
Sbjct: 228  VKELLRAGYKPSDICIVARD-VVAYRETMGWAFRRRGLPVPGDNASLLDNPMVSSILRWL 286

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                    +   +           + + + L D +      L+    N       L  S 
Sbjct: 287  DSLWDDNVSTEAISDGFYLKPLNLETMDLSLQDTLDAYAQKLIDMLKNS-----GLRFSI 341

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              +  +  ++ +  D       ++  +   +                    E+   +  +
Sbjct: 342  AERGRLGDIERMAADMKAYEQFVYILQSLVSAQQWNGM------ANAVGLGEFCRTLRDM 395

Query: 613  IDGETVKPKIEKSSTL-FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
              G  V        ++  +L    +R L F  + + G+ EG +P+    +  +    +  
Sbjct: 396  C-GRAVYCDSISYGSVPSLLMPSTARGLAFPVIFMAGMVEGEFPRAIRADWLMKDDERLK 454

Query: 672  LN-LKTAEKYIGQAAHDFEMANGTRHLIY--TRSL-RENNIPTIASRWLQRLLVLGGTDF 727
               + T+   + Q    F +A      +   T    + +  P + S + + +  L     
Sbjct: 455  AEVMPTSRGLLAQERIFFNLAVQAAQRMLFMTYPKVKPDGTPALISSFAEDISALLPDMP 514

Query: 728  FDNLKKRGQCYLDWTRKLDYTTK----QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
               +       LD   ++                + +   + Q   +S +   +    PY
Sbjct: 515  VYEV--SVSDVLDMPSEMRPDEAKSVGYTACGDMQVYIKSKFQNSPFSATAFNEYAMCPY 572

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-----PEINHLMKQI 838
              +  R+L+L      +  P   D G+++H  + E ++  I               +  I
Sbjct: 573  KFFMGRLLELRA-EEDETRPSALDIGSIYHAALKEFMQDYIGVGLVPDKRERYAERLADI 631

Query: 839  IDSHFEKEN-----LPPHIDIIWRHLFHKISHSFL----EHEEKIQSSIEKIFVNIPAKM 889
               H +        +   +  + +     +  ++L      E++ + + +   +     M
Sbjct: 632  AIRHIDTSGIKSKYVTEALYHVEKQRMVALLLAWLDAELALEQRHKGAYKPYRLEQAFGM 691

Query: 890  AIESI--------GIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLE 940
                          I L G  DRID  + G   I DYK G   P  +     +D QL + 
Sbjct: 692  DGAPPLILSDGRYDIRLIGRIDRIDTAQDGRFIIYDYKKGKSTPDADDIADGMDFQLPVY 751

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS------EKSLKNL 994
              A   G   + +    A   Y  ++       +       +           ++    L
Sbjct: 752  IWAA--GKMLEHEGCTPAGAAYYSIEGAGLSGMMVKKDSGINTPRQRKGVLDDKEWDDML 809

Query: 995  IEIVTLLQ 1002
              + + L 
Sbjct: 810  ERLKSELF 817


>gi|307709427|ref|ZP_07645884.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK564]
 gi|307619741|gb|EFN98860.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK564]
          Length = 1098

 Score =  154 bits (388), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 126/974 (12%), Positives = 259/974 (26%), Gaps = 154/974 (15%)

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
           P  +++  +              P  ++                     + L ++   I 
Sbjct: 84  PAKTSLDDIGLGMAFYKCLAELDPKDLRVYGA---------IKQDPQFIQQLIELYHEIA 134

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA- 219
           T +  + DL +L +E            L +  +  T  L +    +       L+ A   
Sbjct: 135 TAQMSFLDLESLTDEDKRAD-------LFLIFEKVTAYL-DQGQLAQRSQLSHLIEAIEN 186

Query: 220 -EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
            +     T+  ++I G T       R++  +     G  ++ G                S
Sbjct: 187 DKVSSDFTQIALVIDGFTRFSAEEERIVDLLHG--KGVEIVIGA-------------YAS 231

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
               +S  +     Q S+ + L  L  K            +   ++     SF       
Sbjct: 232 KKAYTSPFSEGNLYQASV-EFLHHLASK-------YQTPAQDRSQTHEKMDSFDKASRLL 283

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-----NKKKSALIT 393
             + D  E      +    ++ +     ++EE   +A ++R  L E      K    L+ 
Sbjct: 284 ESSYDFSELTWDVDENDRENLQIWSCLTQKEELELVARSIRQKLHENSNLSYKHFRILLG 343

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              +    +K    ++ I   +     ++    +  + S+L           +  L++  
Sbjct: 344 DVASYQLSLKTIFDQYQIPFYLGKSESMAHHPLTQFVESILALKRYRFRQEDLINLLRTG 403

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
           L                        + +  DI   +  +                +S   
Sbjct: 404 L----------------------YTDLSQADIDAFEQYIRYLGINCLPAFQQTFTKSHHR 441

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           + D E    L   IL  +  L   +  K             +  VT            L 
Sbjct: 442 KFDLERLNALRLRILTPLETLFASRKQKAENLLQKWNIFLKEGAVTKQLQDLTATIETLE 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                E  K    +  +     +  + +  +++ ++   +     +       T+ +   
Sbjct: 502 QERQAEVWKAFCHVLEQFATVFASSQVSLEDFLALLHSGMSLSQYRTIPATVGTVLVQSY 561

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA-------H 686
                L  D +   GL +   PK       L+   +  LN  T E      A       +
Sbjct: 562 DLIAPLTADFVYAIGLTQDNLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKN 621

Query: 687 DFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD-- 740
            + M +      + L+ +     N   +  S +LQ L+  G +     +  +G    D  
Sbjct: 622 RYTMLSLVNSARKQLVLSAPSLFNESESKESAYLQELVHFGFSRKEKKMNHKGLSKEDMG 681

Query: 741 ------------------------------WTRKLDYTTKQPHYKRPKPF---------- 760
                                           R +     Q   + P             
Sbjct: 682 SYHSLLSSLVVYHQQGKMSYTEQDLTFIKVLARVMGKKLDQQGLENPALPTSPSSKQLTK 741

Query: 761 -----PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                     Q    S S + +   + Y+ + R +L L      +  PD    G   H I
Sbjct: 742 DTLQALYPTDQEFYLSTSGLTEFYRNQYSYFLRYVLGLQ--EELRLRPDARSHGNFLHRI 799

Query: 816 ITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
               ++     +  +      Q    +  FE            + +   ++ +   H  +
Sbjct: 800 FERALQLPDENSFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTT-GHILR 858

Query: 874 IQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPK 925
              +IE I             + ++    I + G  DRID L   G + + DYK+     
Sbjct: 859 HNPAIETIKEEANFGGKEQAFIQLDNGRSIFVRGKVDRIDRLKADGAIGVVDYKS----S 914

Query: 926 KETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               Q       ++ QL    AALK                Y+ + +  +          
Sbjct: 915 LTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMYLEMAEPVQSLMAVKSLAG 969

Query: 981 YSADELSEKSLKNL 994
              +       + L
Sbjct: 970 AVVEASKSMKYQGL 983


>gi|306829518|ref|ZP_07462708.1| ATP-dependent nuclease subunit B [Streptococcus mitis ATCC 6249]
 gi|304428604|gb|EFM31694.1| ATP-dependent nuclease subunit B [Streptococcus mitis ATCC 6249]
          Length = 1091

 Score =  154 bits (388), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 117/978 (11%), Positives = 265/978 (27%), Gaps = 162/978 (16%)

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
           P  +++  +              P  ++                     + L ++   + 
Sbjct: 76  PAKTSLDDIGLGMAFYKCLAELDPKELRVYGA---------IKQDPQFIQQLVELYHEMT 126

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA- 219
           T +  + DL +L +E             +  + Y  +        +       L+ A   
Sbjct: 127 TAQMSFLDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----GQLTQGSQLSQLIEAIEN 178

Query: 220 -EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
            +     ++  ++I G T       R++  +     G  ++              I   +
Sbjct: 179 DKVSSDFSQIALVIDGFTRFSAEEERVVDLLHR--KGVEIV--------------IGAYA 222

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
           +     +     +   +  + L  L  K            +   ++     SF       
Sbjct: 223 SKKAYISPFTEGNLYQASVEFLHHLGAK-------YQTPAQDRSQTHEKMDSFYKASRLL 275

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALIT 393
             + D  E  +   +K   ++ +     ++EE   +A ++R  L ++ +        L+ 
Sbjct: 276 ESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLHDHPELSYKNFRILLG 335

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              +    +K    ++ I   +     ++    +  + S+L           +  L++  
Sbjct: 336 DVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTG 395

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
           L                        + +  DI   +  +         +      +S   
Sbjct: 396 L----------------------YTDLSQADIDAFEQYLRYLGINGLPSFQQTFTKSHHG 433

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT-VTCLQNVCLDEHRKL 572
           + D E    L   +   + PL T   ++     NL +  W        L     D    +
Sbjct: 434 KFDLERLNSLRLRV---LAPLETLFASRKQKTENL-LQKWNTFLKNAALSKQMQDLTATM 489

Query: 573 PNLWFE---EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
             L  E   E  K    +  +     +  + +  +++ ++   +     +       T+ 
Sbjct: 490 EALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVL 549

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA---- 685
           +        +  + +   GL +   PK       L+   +  LN  T E      A    
Sbjct: 550 VQSYDLIAPMTANFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSEN 609

Query: 686 ---HDFEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC- 737
              + + M        + L+ +     N   +  S +LQ L+  G +     + ++    
Sbjct: 610 LKKNRYTMLSLVNAARKQLVLSAPSLLNENESKESAYLQELVHFGFSRIEKKIHQKSLSK 669

Query: 738 ---------------------------------YLDWT--RKLDYTTKQPHYKRPKP--- 759
                                             L     +KLD            P   
Sbjct: 670 DDMGSYHSLLSSLVAYHQQYETSDTEQDVTFVKVLARVMGKKLDQKGLTNPALPTSPSSK 729

Query: 760 --------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                         +    S S + +   + Y+ + R +L L      +  PD    G  
Sbjct: 730 PLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EEVRLRPDARSHGNF 787

Query: 812 FHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            H I    +K        +      +    +  FE            + +   ++ +   
Sbjct: 788 LHRIFERALKLPAENPFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEVLLDVARTT-G 846

Query: 870 HEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYKTG 921
           H  +   +IE I             + ++    + + G  DRID L  +G + + DYK+ 
Sbjct: 847 HILRHNPAIETIQEEATFGGKDQSFIQLDNGRNVFVRGKVDRIDRLKANGALGVVDYKS- 905

Query: 922 DNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
                   Q       ++ QL    AALK                Y+ + +  +      
Sbjct: 906 ---SLTQFQFPNFFNGLNSQLPTYLAALKREEEQNF-----FGAMYLEMAEPVQSLLTVK 957

Query: 977 DKKKYSADELSEKSLKNL 994
                 A+       + L
Sbjct: 958 SLAGAVAEASKSMKYQGL 975


>gi|108798375|ref|YP_638572.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119867472|ref|YP_937424.1| UvrD/REP helicase [Mycobacterium sp. KMS]
 gi|108768794|gb|ABG07516.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119693561|gb|ABL90634.1| UvrD/REP helicase [Mycobacterium sp. KMS]
          Length = 1091

 Score =  154 bits (388), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 119/1050 (11%), Positives = 257/1050 (24%), Gaps = 140/1050 (13%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57
            +++  V    P          A    T+     +   N       V     T++A     
Sbjct: 21   DEQAAVIAAPPGPVVVIAGAGAGKTETMAARVVWLVANGYATPGQVLGLTFTRKAAGQLL 80

Query: 58   QELRSEFIEITGKKSTILPIIKS-LGDVV-------EEKFTADLLLSYNLNPPVSNIQRL 109
            + +R+    ++G  + ++P I   LG             F   LL  + L  P+    RL
Sbjct: 81   RRVRTRLARLSG--AGLVPGIGPGLGAADDPPTVSTYHAFAGTLLRDHGLLLPIEPETRL 138

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIETEEKKW 166
            L    L       + +    L  E   +        + LA  LA+ +   D +     + 
Sbjct: 139  LGETELWQWAHRVVCEHPGPL--EIDKTPAAVTDMVLRLAGQLAEHLVDTDELRDTHVEL 196

Query: 167  EDLHALKNE----KYGMWWLLAADFLK---------IASKYWTERLVELNASSPVGYQIA 213
            E L          +           L                  R+             A
Sbjct: 197  ERLVHTLPAGPYQRDRGPSQWLLRMLATQTERTELIPLVDALHRRMQSEKVMDFGMQMAA 256

Query: 214  LMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHI 266
              R  A H       +     +++     +  A    +S +      +G  +    D   
Sbjct: 257  AARLAAAHPQVGAELRARYRVVLLDEYQDTGHAQRVALSALFGGGVDDGLALTAVGDPIQ 316

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                W   +  +    +++   S      + +L          +     VS E   RS+ 
Sbjct: 317  SIYGWRGASATNLPRFATDFPLSDGTPARVLELRTSWRNPPSTLHLANAVSAEARQRSVA 376

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
            +      P          L + +   +   +D         R E            DE  
Sbjct: 377  VRSLRPRPGAEPGTIRLALLDNVAAERDWVADEVASRYHAARAE------------DEAP 424

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              +A++      A  +   LT  G+ +++     L      + + ++L  +       A 
Sbjct: 425  PTAAVLLRRNADAAPMAEALTARGVPVEVVGLAGLLGVAEVADVVAMLRLVADPTAGAAA 484

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
               V  P  + G  +      +         G + +   +  ++      A   +    P
Sbjct: 485  MRTVTGPRWRLGGRDIAALWRRAVELDDGGPGPEATAAEIVARAAPDADAACLADAICDP 544

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                + S E     V L   +      L     +  +    +   D             +
Sbjct: 545  GPAEKYSPEGYRRIVALGRELTSLRGHLGIALPDLVTEVRRVLGVDVEARA-------AM 597

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                        +    + + ++             + ++D      +G         + 
Sbjct: 598  PVPAGWSGTEHLDAFVDVVADYAGRPGATVGG---LLAYLDAAMERENGLAPADLAVSTE 654

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV------------------- 667
             + IL    ++ L +  + +  L+  ++P       +L+                     
Sbjct: 655  RVQILTVHAAKGLEWQVVAVPHLSGRIFPSTAQARTWLTDPADLPPLLRGDRATTTDHGV 714

Query: 668  -----------------MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENN 707
                             +          +   +    +         +            
Sbjct: 715  PVLDTSDVNDRKILSDRINDHKRRLEQRRVDEERRLLYVALTRAEDTLLLSGHHWGATEA 774

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
             P   S +L+ L  +                                 +   +P   A  
Sbjct: 775  KPRGPSEFLEELKDIIDRAEQAGQPCGVVDQWAPAPADGEKNPLRDNVKEVLWPADPAGG 834

Query: 768  RTYSFSEIKQLINDPYA-------------------VYARRILKLDFIPHFKKDPDRTDR 808
            R  +     QL+    A                   +  R             +   +  
Sbjct: 835  RRTAVDRGAQLVARAMAGAVQTDQDVDGWAADVDALLAERERAAQKPPLTLPAEVSVSTL 894

Query: 809  GTLFHN---IITELIKKRINKNTPEIN--HLMKQIIDSHFEKE----------NLPPHID 853
              L  +   +++ + ++   +  P  +        +  +F  E           +     
Sbjct: 895  VNLSDDPATVLSRINRRVPTRPDPNASLGTAFHDWVQRYFGAERLFDLDDLPGAVDSDTR 954

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913
                    ++  +F+      +     I V +P  M I      + G  D +     G  
Sbjct: 955  RAEAEQLTELQTAFMLSPWAAR---TPIDVEVPFDMVIGET--MVRGRIDAVFADDDGGA 1009

Query: 914  DITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
             I D+KTG  P    A +    QL++   A
Sbjct: 1010 TIVDWKTGAAPDTPAAAEHAAIQLAVYRLA 1039


>gi|305432275|ref|ZP_07401438.1| conserved hypothetical protein [Campylobacter coli JV20]
 gi|304444623|gb|EFM37273.1| conserved hypothetical protein [Campylobacter coli JV20]
          Length = 788

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 118/333 (35%), Gaps = 25/333 (7%)

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + ++G LESR L+FD +++   NE   PK +    FL+  ++    L + E+    
Sbjct: 422 GGGKVTVMGLLESRGLSFDGVVILDFNEDFVPKRSINELFLNNEVRKKAGLISYERRENL 481

Query: 684 AAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
               +E      + L  +            SR+L  L       FF+      + YL+  
Sbjct: 482 QRLYYENLMKNAKKLSISFVEN---EEQTRSRFLDELDFN----FFEEKTTPSKAYLNAL 534

Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
           +      +        P    +   +  SFS +   +      + R IL+L        +
Sbjct: 535 KLDYQGVELNLNPIKVPVLKHDIFEKELSFSRLNLFLYQKRTYFYRYILELPEARALSDE 594

Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
               ++G   H ++    K     N         +I +   E+E     I  +   +F  
Sbjct: 595 SKAKNQGNFIHKMLELYYKNYSKNNFN------LKIFNDLLEQEYPKYSISELELEIFKL 648

Query: 863 ISHSFLEHEEKIQS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
               F E+E++      + I         + I++  I L G  DRID L+     I DYK
Sbjct: 649 KFIQFAENEKEHFKLGYKVIEQEEEHHKALNIQNHTIRLKGIVDRIDKLEDKHF-IIDYK 707

Query: 920 TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
           +G  P+K         QL+   A     + ++ 
Sbjct: 708 SGKVPEK-------SFQLAFYKALCDENAEAKF 733


>gi|296138860|ref|YP_003646103.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
 gi|296026994|gb|ADG77764.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
          Length = 1111

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 125/1045 (11%), Positives = 267/1045 (25%), Gaps = 128/1045 (12%)

Query: 46   SVTIYVPTKRAIQEL----RSEFIEITGKKSTILPIIKSLGDVV------------EEKF 89
             V     T++A Q+L    R     +    +  L  I   G++                +
Sbjct: 76   QVLGLTFTRKAAQQLMIRVRKRLSRLGAAPA--LERIDPSGELRVLLRTVEPEISTYHAY 133

Query: 90   TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
               L   Y +  PV    RL+       I  + +     D   E+  +        + L+
Sbjct: 134  AGRLHGDYGMLLPVEPTVRLVSETERWQIAFDVVTGW--DEALETDKNPATLTEQVLGLS 191

Query: 150  KNLADII---DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI------------ASKY 194
              LAD +   D +E  + + E L  L            A  LK               + 
Sbjct: 192  GALADHLVTPDQLEASDDELERLIGLLPPGPRQRAAPNAALLKAADVQEQRRALIPLVRA 251

Query: 195  WTERLVELNASSPV-----GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
                +                Q+AL   +   L +   G +++     +  A   L++++
Sbjct: 252  VAAEMRVREVLDFGSQMGLAAQLALANPDVAALERSRFGAVLLDEYQDTGHAQRMLLASL 311

Query: 250  ANHPNG-AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
               P G A V    D       W   +  +    +++   +        +LL        
Sbjct: 312  FGGPGGAAAVTAVGDPIQSIYGWRGASAANLPRFATDFPQADGMPAPRRELLTSWRNPTG 371

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
             +     VS ++  R + +S+    PD         L               +I+     
Sbjct: 372  ALSLANAVSEDLRRRGVPVSELRARPDAPSGDLRIAL------------HSTVIDERTWV 419

Query: 369  EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
             +AI+     R+   +     A++      +  +   L   G+ +++     L  T    
Sbjct: 420  ADAITALWRGRLDAGDPPPTVAVLVRRNADSAGLAAALGERGVPVEVVGLGGLLHTPEVQ 479

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS--RAKNALELVALRGNKNSYDIM 486
             L +LL    +     A   L+  P  + G  +      RA+                  
Sbjct: 480  DLVALLRLAVEPLAGTAAMRLLTGPRWQLGAADLRALWNRARRIAHGTGRAATGLVTTAD 539

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            +L   +   +  +  +             D + +   +  I      +   +        
Sbjct: 540  ELDQALDATLPAELLDAAGLGDAIADPGPDSDYSAAGLAKIRSLDREIRNVRERLGH-PL 598

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
               +++  ++    ++       +        E     + +     E  +      + ++
Sbjct: 599  PEVVAEAERVLGVSIETRIRAARQLGGRATGREHLDAFADVVVSYAERPTATLPGLLSFL 658

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS- 665
                 +  G T       +  + +L    ++ L +D + +  L+EG++P N A   +LS 
Sbjct: 659  AAAEAVEGGLTPGDVEVATDRVQVLTVHSAKGLEWDVVAVPHLSEGIFPSNRAMPTWLST 718

Query: 666  ---------------------------------------RVMQSDLNLKTAEKYIGQAAH 686
                                                      ++ L      +       
Sbjct: 719  PAELPPELRGDVAEPGESDGVPRLDLSECNNRKDLEDALDTHRAALKAMNMHEDERLFYV 778

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                  GT  L       +       SR+L R                     +      
Sbjct: 779  AVTRTQGTLLLSGHYWSEDVKTAKAPSRFLDRAREHAPEAVGHWAATPVDDAENPLEAEP 838

Query: 747  YTTKQPHYKRPKPFPPLEAQPRT---------YSFSEIKQLINDPYAVYARRILKLDFIP 797
                 P           +A              + ++ +    DP+   A     L    
Sbjct: 839  VQAPWPRDFLAAHRADADAGAALVLAALADPDGTEADARAPGEDPHGWAADVTALLAERA 898

Query: 798  H-------------------FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
                                 +               +         + T     L ++ 
Sbjct: 899  RQAAMDLEVAVPREVSVSQLVELRRSPETFARRLRRPVPYRPNPYARRGTAFHAWLERRY 958

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
              S     +  P            ++      EE   ++   + + +P +  I + G  +
Sbjct: 959  GASRLLDFDELPGAADGDAGADENLALLQRRFEESEWAARTPVDIEVPFE--IAAAGTVV 1016

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
             G  D +     G   + D+KTG  P +   ++    QL+    A        +   +V 
Sbjct: 1017 RGRMDAVFRDPGGGFTVVDWKTGVRPSEPADERAAAVQLAAYRLAWAR--LRDVPVDEVR 1074

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSA 983
              F+     +        D      
Sbjct: 1075 AAFFYVRSGETVSPSDLLDHAGLEL 1099


>gi|169237546|ref|YP_001690750.1| nuclease subunit B-like protein [Halobacterium salinarum R1]
 gi|167728773|emb|CAP15641.1| nuclease subunit B homolog [Halobacterium salinarum R1]
          Length = 1018

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 94/782 (12%), Positives = 211/782 (26%), Gaps = 145/782 (18%)

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---SALITADRNLARRVK 403
               P+       +   E      E   +A  LR  L   +     + +       +  V+
Sbjct: 235  RPDPDTAPVPDGLRWRELPTPEREIRFVARELRTELANGRDPDDLAVVAPGTEAYSGYVE 294

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
                 F I    +A   L+ T   S++  LLN          + +L+ +PL      ++ 
Sbjct: 295  DTFDTFDIPHVTTAASQLNQTFAGSVVHDLLNLAEPDPRAEDLTSLLANPLVDIVDTDQA 354

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                                              T           S L ++  +    L
Sbjct: 355  N-------------------------------AVTAAARRRDTVSVSPLLDDVDDEVASL 383

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
            V+ +L  + PL T      +      + D   L           E       +       
Sbjct: 384  VEELLATLEPLRTDDIEDATETLRRLMDDRFDLEAATEDYASGAEQAVEQRAY------D 437

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            L        E+ + + ++                  P+      + ++G L++R+ +F+ 
Sbjct: 438  LVDEVLSSFESLAAVNSDLSPLALFTRAFDGVAIRVPQRAAGGHVEVMGLLDARMRSFEK 497

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
            + L GL    +P    +  F   +  +D    T ++ +        +      L  T   
Sbjct: 498  VFLVGLTSEHFPVTPERPAFFEEMTDADPRFDTGDERLRGRYLFATLLANVDELTITTPE 557

Query: 704  -RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY-------- 754
              ++    + S  L  L  + G +  D +  R     D  R++  T  +           
Sbjct: 558  TGDDESAVVRSPVLDELQRVTGIEPEDGVDDRVGSREDLQRRVAATADRRAAVSHAGDRG 617

Query: 755  ---------------------------------KRPKPFPPLEAQPRTYSFSEIKQLIND 781
                                                       ++   YS S I++ +  
Sbjct: 618  DLSPEQTKRTDRGLHCADNRGTAGLSEHDGVLEPETVDEVYPPSEREPYSASRIERYVEC 677

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------EI 831
             +  YA  +L ++     +  P   + G+  H+++        ++             ++
Sbjct: 678  GFKFYADEVLGIEDPDDIEVVPTPLETGSYVHDVLERFFADLQDETEDGVDLTEFDRHDL 737

Query: 832  NHLMKQIIDSHFEKENLPPH--IDIIWRHLF-----------------------HKISHS 866
               +++I     +  +          W+                            +  +
Sbjct: 738  ATHLREIAVEELQDTDFEYDGLFYERWKAELFAGLGDGESVPYEAGSKPHDAPEQGLFAT 797

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIE-------------SIGIHLTGFADRIDLLKSG-- 911
            FL++E    S+        P    +                 + + G+ DR+D+ + G  
Sbjct: 798  FLDNELSRDSAGRPHLFEAPFGEGLPDSDAGPFTVERPDGSTVSIRGYIDRVDVSRDGEQ 857

Query: 912  -FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
              + + DYKTG  P           QL +   A        +  +   +  Y +L+    
Sbjct: 858  PTLTLYDYKTGRAPYMTKTTGGTKFQLPIYLLAAAEVVDGDLFEQGSLSATYYQLRPPND 917

Query: 971  IDCITNDKKKYSAD--------ELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022
            +      + K+ ++         +  + L  + E +   +       +       +    
Sbjct: 918  LKVPRGLESKFDSEVDLRRFLNNVVPEWLGQIDEAIGKGRFHTTVLSARGA----NCRYC 973

Query: 1023 EY 1024
            +Y
Sbjct: 974  DY 975


>gi|28572401|ref|NP_789181.1| ATP-dependent DNA helicase subunit [Tropheryma whipplei TW08/27]
 gi|28410532|emb|CAD66918.1| putative ATP-dependent DNA helicase subunit [Tropheryma whipplei
           TW08/27]
          Length = 993

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 113/946 (11%), Positives = 238/946 (25%), Gaps = 134/946 (14%)

Query: 46  SVTIYVPTKRAIQELRS----EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
            V +  P +     L        ++    +S  L  + +            +        
Sbjct: 55  EVLVLAPGRLLANRLNGIALPALLKEKKVRSGRL--VVTPASFAFRIVQNSM--KGERPT 110

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            +S       +A  I                        S A +      +   I+ +  
Sbjct: 111 LLSGADEDQVIAETIAQNCEL---------------FKSSYARSPNFRSRMRFFIEDLSR 155

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                  L  +        W   A  +    + +       NA + V        A+   
Sbjct: 156 HGIDPAHLGKIDR------WKTYAALI----EKYRLARTSNNAFTAVEIIERA--AQLAS 203

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                   I++  +        RL S +A      I+    D     A+  + +      
Sbjct: 204 TGYLPYRVIMVDEAQELAAEHMRLFSALARRNITVILFGDPDK----AVARSASPSIFLD 259

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            S         +       +   + ++  + +G   + +  R    S             
Sbjct: 260 FSEKLFV---LKTVFRTPRNLHLLSQKICQGIGVTGSVLAHRQSFNSSIL---------- 306

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNL 398
                            V  + + +       IA   R          +  ALI   R+ 
Sbjct: 307 --------------EGRVETVISSSRATSMADIARWFREKHLLEGIDWEDMALIIFQRSS 352

Query: 399 ARRVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNAIFKL--NDFMAIATLVKHPLA 455
           A      L RFG+ + I   G+ LS    +  + + +             +  L+  P+ 
Sbjct: 353 AEVYSHFLERFGVPVQILGGGLNLSEKPIAGAILNAIELACFPDILTGKTLVKLLLSPIG 412

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
            F             L +   R    +        ++ +R+    +       Q      
Sbjct: 413 GFD------VFLMRKLTIELKRIAPKNI------QVLNERLLWAFHAYRKLQTQDTDEVY 460

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
              LA  +   + +    L++ +        +L +  W     + L              
Sbjct: 461 RVFLASRIGRSLKKIFECLISLERLYREDNVSLPVLIW--HVYSFLNLKSAVSKEPWQT- 517

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP----KIEKSSTLFIL 631
             +   + L  + +      +  K + +    +I + I    V        EK   + IL
Sbjct: 518 -SKVSHRVLEEVIALQKLADAVSKKDPLCSAGLILQKIINAEVPVDNLSIREKRGCVTIL 576

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL------SRVMQSDLNLKTAEKYIGQAA 685
               S    +  +++  +       +T  +P L      +      L  K A +      
Sbjct: 577 TPASSVGYEYRAVVITDIQGSHKMDSTQLDPELALADINNIPFSRYLESKLAGRRHNLLR 636

Query: 686 HDFEMANGTRH--------------LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
             ++    +                     +   +      S     L  +      D  
Sbjct: 637 TLYQAVTRSTSDLLVSVIDSAETSPSWLFYAFFSDYPSCELSSLPLTLRGIVTQLRLDLE 696

Query: 732 KKRGQCYLDWT------RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
           +  G               +     Q  Y              +   S + +    P   
Sbjct: 697 RDPGNTEAASALRLLAKEGISQADPQNWYGYLSRTENKSYVMDSIKPSALDKFHTCPLGW 756

Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
           +       D +   +   + T+ GT+ H  + EL       N  E        +    + 
Sbjct: 757 F------TDQLDCNRYPGNATEIGTIIHRCMQELTCDNRQPNLNEFLDYAYAKLREA-DF 809

Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEK-IQSSIEKIFVNIPAKMAIE---SIGIHLTGF 901
           E+    +    +     I    +++           +         +       I ++G 
Sbjct: 810 ESRW--VLEREKKRLVGIIRKLVDYLIDFDAHGGTLLASEKSFSFDLNVFKDRSIMISGQ 867

Query: 902 ADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKA 946
            DR++ L SG + I D KTG +   K  A+   + QLS    A++ 
Sbjct: 868 IDRLERLSSGEIRIVDLKTGSSLLSKNDAES--NLQLSAYQLAVEH 911


>gi|289167910|ref|YP_003446179.1| exonuclease RexB [Streptococcus mitis B6]
 gi|288907477|emb|CBJ22314.1| exonuclease RexB [Streptococcus mitis B6]
          Length = 1091

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 124/974 (12%), Positives = 258/974 (26%), Gaps = 154/974 (15%)

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
           P  +++  +              P  ++                     + L ++   + 
Sbjct: 76  PAKTSLDDIGLGMAFYKCLAELDPKDLRVYGA---------IKQDPQFIQQLIELYHEMT 126

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA- 219
             +  + DL +L +E             +  + Y  +        +       L+ A   
Sbjct: 127 KAQMSFLDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----GQLAQGSQLSHLIEAIEN 178

Query: 220 -EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
            +     T+  ++I G T        ++  +     G  ++ G                S
Sbjct: 179 DKVSSDFTQIALVIDGFTRFSAEEEWIVDLLHG--KGVEIVIGA-------------YAS 223

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
               +S        Q S+ + L  L  K            + Y ++     SF       
Sbjct: 224 KKAYTSPFAEGNLYQASV-EFLHHLASK-------YQTPAQDYSQTHEKMDSFDKASRLL 275

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-----NKKKSALIT 393
             + D  E  +   +K   ++ +     ++EE   +A ++R  L E      K    L+ 
Sbjct: 276 ESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLHENSNLSYKHLRILLG 335

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              +    +K    ++ I   +     ++    +  + S+L           +  L++  
Sbjct: 336 DVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQFVESILALKRYRFRQEDLINLLRTG 395

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
           L                        + +  DI   +  +                +S   
Sbjct: 396 L----------------------YTDLSQTDIDAFEQYIRYLGINGLPAFQQTFTKSHHG 433

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           + + E    L   IL  +  L   +  K         S   + +VT            + 
Sbjct: 434 KFNLERLNALRLRILTPLETLFASRKQKAENLLQKWNSFLKESSVTKQLQDLTATMEAVE 493

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                E  K    +  +     +  + N  +++ ++   +     +       T+ +   
Sbjct: 494 QERQTEVWKAFCHVLEQFATVFAGSQVNLEDFLALLHSGMSLSQYRTIPATVDTVLVQSY 553

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA-------H 686
                L  D +   GL +   PK       L+   +  LN  T E      A       +
Sbjct: 554 DLIAPLTTDFVYAIGLTQDNLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKN 613

Query: 687 DFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLG------------------- 723
            + M +      + LI +     N   +  S +LQ L+  G                   
Sbjct: 614 RYTMLSLVNSARKELILSAPSLFNESESKESAYLQELVHFGFSRKEKRMNHKGLSKEDMG 673

Query: 724 ---------------GTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKP------- 759
                          G              L     +KLD    +       P       
Sbjct: 674 SYHSLLSSLVAYHQQGEPSDREQDLTFVKVLARVMGKKLDQQGLENPALPTSPSSKQLAK 733

Query: 760 ----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                     Q    S S + +   + Y+ + R +L L      +  PD    G   H I
Sbjct: 734 DTLQALYPAEQEFYLSTSGLTEFYRNQYSYFLRYVLGLQ--EELRLHPDARSHGNFLHRI 791

Query: 816 ITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
               ++     +  +      Q    +  FE            + +   ++ +   H  +
Sbjct: 792 FERALQLPDEDSFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTT-GHILR 850

Query: 874 IQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPK 925
              +IE I             + ++    + + G  DRID L   G + + DYK+     
Sbjct: 851 HNPAIETIKEEANFGGKEQSFIQLDNGRSVFVRGKVDRIDRLKADGAIGVVDYKS----S 906

Query: 926 KETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               Q       ++ QL    AALK                Y+ + +  +   +      
Sbjct: 907 MTQFQFPHFFNGLNSQLPTYLAALKKEGEQNF-----FGAMYLEMAEPVQSLMVVKSLAG 961

Query: 981 YSADELSEKSLKNL 994
              +       + L
Sbjct: 962 AIVEASKSMKYQGL 975


>gi|83816080|ref|YP_445924.1| hypothetical protein SRU_1807 [Salinibacter ruber DSM 13855]
 gi|83757474|gb|ABC45587.1| hypothetical protein SRU_1807 [Salinibacter ruber DSM 13855]
          Length = 1073

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 112/933 (12%), Positives = 244/933 (26%), Gaps = 108/933 (11%)

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR--LMST 248
             +    ++L        +     L    AE +    +    +A                 
Sbjct: 130  LAARLLKQLQRQGRLDGLPGPRQLADTVAEAIETLRRNGAPLADVQARAQTEDASATFRV 189

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            VA+   G   L  LD H        +   + ++  +          ++   +D L  + +
Sbjct: 190  VADCYEG--YLDALDAHGLYDDAQVLRWAAESVREATPPAVEASVVAVCDAVD-LPEEAQ 246

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
               R      E + R         PP T+  R  D              +V +  A    
Sbjct: 247  QFVRAVRAGAEAFYRIGRPQPEAPPPQTAAARFVDAPLPPGETANGTVQEVHVRRAVGSA 306

Query: 369  EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            +E  ++   L  +     +    +  ++     +     R G+ + I+ G+    T   +
Sbjct: 307  KEVDALVRDLLDADVPFDEVEIAVAGEQPYVSLIADRAARVGLPVSIATGVSAGQTRTGT 366

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE--KYLSRAKNALELVALRGNKNSYDIM 486
             L + L  + +  D   +  +++    +               +LE   +     +    
Sbjct: 367  ALLAFLEWVTEDFDPAVLIRMLRSGHLRIDRMRSEMENETGAGSLEAHEVATLLAARRYE 426

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
              +      +            +      + E        +      +            
Sbjct: 427  PGRDGYAKALGAAIGELEDRIAELEEQGLEPERDRERRRALRFVARLVEALLDLVPREAS 486

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG--KTLSSLFSKIIETGSCIKANAIE 604
               ++   +  V     V      K       +E     L     +++      +A+  +
Sbjct: 487  VQEMAARAQRFVERFGPVDPPPEDKPEADRTLDEAGRTVLWQRLDRLVRVPVDYEASGPQ 546

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
               ++ R ++G+ V+ +  +  T  ++    +       L + G++         +   L
Sbjct: 547  LAALLRRWLEGQYVRAEHPRPGTAHVVPLESAGYGARSHLYVVGMDSDTLSTAAVEGAML 606

Query: 665  SRVMQSDL------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR----ENNIPTIASR 714
                +  L       L        +A    E A      + +   R    ++      S 
Sbjct: 607  RDPDRRALSDSMDGELPERRSASDEAQWHHEQALARHTGVLSLYTRIFDLDSGEERYPSP 666

Query: 715  WLQRLLVLGGTDFFDN-------------------------------------------L 731
               RL      +                                                
Sbjct: 667  LFLRLAEAPTVESERTEGIVPTGERTRLNDMEAWLTAFRNRGGEGRGTGTARDALSDCYP 726

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT-----YSFSEIKQLINDPYAVY 786
              R        R+ D  T          +P L+           S   ++     PY  +
Sbjct: 727  WLRRGEDARQARQSDAYTAHDGLLEAGTYPELDFLRDRENGGPMSAGRLETFAETPYLYF 786

Query: 787  ARRILKLDFIPHFKKD----PDRTDRGTLFHNIITEL---IKKRINKNTPEINHLMKQII 839
             + +L ++ +     D     +   RG++ H         +++   +   E   L++  +
Sbjct: 787  LKYVLGVEPLDEPALDDEPWLNALRRGSILHATFEAFMTTLREGDERPAAEHEPLLEDTL 846

Query: 840  DSHFEKE-----NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------- 887
             + F+ E          ++          +  FL  E     +   ++  +         
Sbjct: 847  QAAFKAETEQVAPPSDVVEEAAFRRLRADALVFLRAETAHCRTHAPLYHEVGFGYGPYRR 906

Query: 888  --------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET---AQKLIDPQ 936
                     + +E   + L G  DR+D    G + + DYKTG     E           Q
Sbjct: 907  QEEDFGAVTIPVEGREMSLRGRIDRVDRRPDGTLAVWDYKTGRASSFEEGDPVADGAQLQ 966

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
             +L A AL       +    V    Y     + +   +  D  +Y  +   E+ L  L  
Sbjct: 967  WALYAYALS-----TLTDETVGTSGYYFPTTRERGTRLAFDPGRYRTE--VERLLDRLSS 1019

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
            +     +G  P     R       +  YD L R
Sbjct: 1020 LAA---SGSFPMHPRARYLNAWRYRG-YDRLFR 1048


>gi|294507834|ref|YP_003571892.1| ATP-dependent nuclease [Salinibacter ruber M8]
 gi|294344162|emb|CBH24940.1| ATP-dependent nuclease [Salinibacter ruber M8]
          Length = 1073

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 110/933 (11%), Positives = 244/933 (26%), Gaps = 108/933 (11%)

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR--LMST 248
             +    ++L        +     L    AE +    +    +A                 
Sbjct: 130  LAARLLKQLQRQGRLDGLPGPRQLADTVAEAIETLRRNGAPLADVQARAQTEDASATFRV 189

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            VA+   G   L  LD H        +   + ++  +          ++   +D L  + +
Sbjct: 190  VADCYEG--YLDALDAHGLYDDAQVLRWAAESVREATPPAVEASVVAVCDAVD-LPEEAQ 246

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
               R      E + R         PP T+  R  D              +V +  A    
Sbjct: 247  QFVRAVRAGAEAFYRIGRPQPEAPPPQTAAARFVDAPLPPGETANGTVQEVHVRRAVGSA 306

Query: 369  EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            +E  ++   L  +     +    +  ++     +     R G+ + I+ G+    T   +
Sbjct: 307  KEVDALVRDLLDADVPFDEVEIAVAGEQPYVSLIADRAARVGLPVSIATGVSAGQTRTGT 366

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE--KYLSRAKNALELVALRGNKNSYDIM 486
             L + L  + +  D   +  +++    +               +LE   +     +    
Sbjct: 367  ALLAFLEWVTEDFDPAVLIRMLRSGHLRIDRMRSEMENETGAGSLEAHEVATLLAARRYE 426

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
              +      +            +      + E        +      +            
Sbjct: 427  PGRDGYAKALGAAIGELEDRIAELEEQGLEPERDRERRRALRFVARLVEALLDLVPREAS 486

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG--KTLSSLFSKIIETGSCIKANAIE 604
               ++   +  V     V      K       +E     L     +++      +A+  +
Sbjct: 487  VQEMAARAQRFVERFGPVDPPPEDKPEADRTLDEAGRTVLWQRLDRLVRVPVDYEASGPQ 546

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
               ++ R ++G+ V+ +  +  T  ++    +       L + G++         +   L
Sbjct: 547  LAALLRRWLEGQYVRAEHPRPGTAHVVPLESAGYGARSHLYVVGMDSDTLSTAAVEGAML 606

Query: 665  SRVMQSDL------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR----ENNIPTIASR 714
                +  L       L        +A    E A      + +   R    ++      S 
Sbjct: 607  RDPDRRALSDSMDGELPERRSASDEAQWHHEQALARHTGVLSLYTRIFDLDSGEERYPSP 666

Query: 715  WLQRLLVLGGTDFFD-------NLKKRGQCYLDWTRK----------------------- 744
               RL      +            + R      W                          
Sbjct: 667  LFLRLAEAPTVESERTEGIVPTGERTRLNDMEAWLTAFRNRGGEGRGTGTARDALSDCYP 726

Query: 745  -LDYTTKQPHYKRPKPFPPLEA-----------------QPRTYSFSEIKQLINDPYAVY 786
             L         ++   +   +                       S   ++     PY  +
Sbjct: 727  WLRRGEDARQARQSDAYTAHDGLLEAGTYPELDFLRDRENGGPMSAGRLETFAETPYLYF 786

Query: 787  ARRILKLDFIPHFKKD----PDRTDRGTLFHNIITEL---IKKRINKNTPEINHLMKQII 839
             + +L ++ +     D     +   RG++ H         +++R  +   E   L++  +
Sbjct: 787  LKYVLGVEPLDEPALDDEPWLNALRRGSILHATFEAFMTTLRERDERPAAEHEPLLEDTL 846

Query: 840  DSHFEKE-----NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------- 887
             + F+ E          ++          +  FL  E     +   ++  +         
Sbjct: 847  QAAFKAETEQVAPPSDVVEEAAFRRLRADALVFLRAETAHCRTHAPLYHEVGFGYGPYRR 906

Query: 888  --------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET---AQKLIDPQ 936
                     + +E   + L G  DR+D    G + + DYKTG     E           Q
Sbjct: 907  QEEDFGAVTIPVEGREMSLRGRIDRVDRRPDGTLAVWDYKTGRASSFEEGDPVADGAQLQ 966

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
             +L A AL       +    V    Y     + +   +  D  +Y  +   E+ L  L  
Sbjct: 967  WALYAYALS-----TLTDETVGTSGYYFPTTRERGTRLAFDPGRYRTE--VERLLDRLSS 1019

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
            +     +G  P     R       +  YD L R
Sbjct: 1020 LAA---SGSFPMHPRARYLNAWRYRG-YDRLFR 1048


>gi|188585468|ref|YP_001917013.1| ATP-dependent nuclease subunit B-like protein [Natranaerobius
            thermophilus JW/NM-WN-LF]
 gi|179350155|gb|ACB84425.1| ATP-dependent nuclease subunit B-like protein [Natranaerobius
            thermophilus JW/NM-WN-LF]
          Length = 1048

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 85/761 (11%), Positives = 196/761 (25%), Gaps = 121/761 (15%)

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
              + L  A  E  E   +   +R       +   L ++    +  +     ++ I +   
Sbjct: 242  EQIDLFSASGESVEVKQVFSWIRDGCLPFDRTIILYSSSSPYSELIYKLSEKYQIPVTFG 301

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY---LSRAKNALEL 473
             GI +  T    +L  LL  I        +  ++   L   G        + +      +
Sbjct: 302  EGIMIQNTKPGKLLFLLLEWINSGYRVTDLNKILDENLLYIGEGTLSGYKIRKLLREASI 361

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
               R          +  L       + ++  +        +        L   I    T 
Sbjct: 362  GWSRNRYFHRLEKVISEL---ENLEELDDNAIDDNDHSRHQRLLGEYRALYRIINDIFTC 418

Query: 534  LV-TYKTNKNSTCGNLSISDWTKLTV----------------TCLQNVCLDEHRKLPNLW 576
            L               S+S      +                     + L        L 
Sbjct: 419  LDYQTDEQDPEIISLASLSGCIARFIDEFGQVTSQFDKEAQQRIRDELELISQISKSYLE 478

Query: 577  FEEEGKTLSSLFS------KIIETGSCIKANAIEWIDIITR---LIDGETVKPKIEKSST 627
             ++  + L           ++ + G     +      ++     LI  +  +    +   
Sbjct: 479  IDQAIERLKESIENIRVGQELPQAGHIHVDHYQNGWWMLRDNVYLIGFDADRFPGNRQED 538

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
              +L     ++ ++  L      E                   +               +
Sbjct: 539  PILLDEERKQISDWLPLGQDRPKENYQLVLDMLKGIADMTGHMENGHTENRHRENGHREN 598

Query: 688  FEMANGTR-HLIYTRSLRENNIPTI--ASRWLQRLLVLGGTDFFDN--------LKKRGQ 736
                +  +  ++ + S  +         S  L ++      D   +        +   G 
Sbjct: 599  VHNVHKEKGQMVISYSSFDTTEHKEKFPSSLLLQVYRQISGDSDADYTTLQNYLMPPEGM 658

Query: 737  CYLDWTRKLDYTTKQPH------------------------------------------- 753
                 +  +D                                                  
Sbjct: 659  IPKRQSEVMDEIDWWLANYVEYVENGQHLQLNHIVYCYPDLQKGVEAFQNRLSPEFTVYD 718

Query: 754  --YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP----DRTD 807
                  +       + +  S + ++ L   PY  +  ++L ++     + DP    D   
Sbjct: 719  GNVSADRTAIDPRERAKPISPTRLELLGRCPYGYFLNQVLGIEPPEDIEFDPGKWLDSLT 778

Query: 808  RGTLFHNIITELIKKR--INKNTPE------INHLMKQIIDSHFEKENLPPHI-DIIWRH 858
            RG+L H I  +  ++     +   E      +  + +++ID   E+   P  +     + 
Sbjct: 779  RGSLLHTIFEQFYRELTLNQEKPQEHKHSEYLTEMAEELIDQQLEELPPPSDLVYQYEKD 838

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAK-------------MAIE-SIGIHLTGFADR 904
                 +  FL  E++   S   I+  +                + +     ++L+G  DR
Sbjct: 839  DLLNSALVFLRSEQEYFESSRPIYFELYFGRSGDEQEHQDMVPVELPSGKRLYLSGKIDR 898

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQID--CRKVAN 959
            +DL + G     DYKTG       ++        Q +L A AL+            KV  
Sbjct: 899  VDLDQDGNYLAYDYKTGSTYGYSESEYYKGGRQLQHALYALALEQILQENYPHNNIKVTG 958

Query: 960  LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
              Y+    K +        +    +++ E     L+++++ 
Sbjct: 959  AGYLFPTVKGEGVRYIRYYEDNDREQILELV-DKLLDLLSQ 998


>gi|332359410|gb|EGJ37230.1| exonuclease RexB [Streptococcus sanguinis SK355]
          Length = 1093

 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 129/922 (13%), Positives = 256/922 (27%), Gaps = 135/922 (14%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L D+   ++T +  + DL  L+  +           L       T  L + +  S
Sbjct: 113 QFIQQLMDLHHELQTAQMSFADLEFLEEPEKRED-------LVKIFTASTAALNKGDFDS 165

Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                       A +   +     ++I G T        L+S +     G  ++ G   +
Sbjct: 166 SSQIAAFTQHILAGDTDEQLADLALVIDGFTRFSAEEEYLVSLLHR--KGVEIVIG--TY 221

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +     +S           L KL +   +K + +              +
Sbjct: 222 ASQKSYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYIPHAEAEDAFGRISKV 273

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
           + S+      T  +  TD             S + +    N++EE   +A ++R  + + 
Sbjct: 274 LESRYDFSESTVSLSETDR------------SQLQIWATMNQKEELEYVAKSIRQRVHDG 321

Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              K   L+  D    +        ++ I   +     ++       + SL         
Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L+K  L      E          EL          DI     L  D  A  +  
Sbjct: 382 LEDLLNLLKTGLYGDFTQE----------ELDHFEQYLRFADIKGAAKLAKDFTANSQGK 431

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
             +             L              L  +     + C + ++    +       
Sbjct: 432 FDLDRLNHIRLRVMTPLQDFFKSRSQTASGLLAKFTEFVQAACLSDNLKALLQ------- 484

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                   +      EE  K  S +  +  +  +  K    +++ +I   +     +   
Sbjct: 485 -----GESQQEQERHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALILSGMLLSNYRTVP 539

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                + +        L    +   GL +  +PK       LS   ++ LN  T  +   
Sbjct: 540 ATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAEL 599

Query: 683 QAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV---------- 721
           Q A         +         T+ L+ +     N +    S +L  L            
Sbjct: 600 QIASSENLKKNRYTALSLINSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIVK 659

Query: 722 ---------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPKP 759
                                L   +         Q +     R L           P+ 
Sbjct: 660 KPQASSDDIGSYRALLSQIIELHQEEIDREWTTEEQTFWAVAVRVLRKKLVAEGISIPQI 719

Query: 760 FPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                              + QP   S S + +     YA + + +L+L     +   PD
Sbjct: 720 SKELKTESLQPETLQALYPQEQPLRLSASALNEYFQHQYAYFLKYVLRLQ--EEWTIHPD 777

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFHK 862
               G   H I  ++++   + +         +      E E++          R L   
Sbjct: 778 ARSHGIFLHRIFEKVLQDDSSDDFDRRLAQAMEETSREAEFESIYSESGQTRFSRQLLLD 837

Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVD 914
            + +         + IE I             + +E    + ++G  DRID L K+  + 
Sbjct: 838 TARAT-GRVLAHPTGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKTESLG 896

Query: 915 ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
           + DYK+GD     E     ++ QL    AA++  +  Q D   +    Y+++      D 
Sbjct: 897 VVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-IFGAMYLQMT-----DP 950

Query: 974 ITNDKKKYSADELSEKSLKNLI 995
           I   K   +  +   +S+K L 
Sbjct: 951 IVVLKDTKTLADAVNQSMKPLQ 972


>gi|57169066|ref|ZP_00368193.1| conserved hypothetical protein [Campylobacter coli RM2228]
 gi|57019524|gb|EAL56215.1| conserved hypothetical protein [Campylobacter coli RM2228]
          Length = 788

 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 118/333 (35%), Gaps = 25/333 (7%)

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + ++G LESR L+FD +++   NE   PK +    FL+  ++    L + E+    
Sbjct: 422 GGGKVTVMGLLESRGLSFDGVVILDFNEDFVPKRSINELFLNNEVRKKAGLISYERRENL 481

Query: 684 AAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
               +E      + L  +            SR+L  L       FF+      + YL+  
Sbjct: 482 QRLYYENLMKNAKKLSISFVEN---EEQTRSRFLDELDFN----FFEEKTTPSKAYLNAL 534

Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
           +      +        P    +   +  SFS +   +      + R IL+L        +
Sbjct: 535 KLDYQGVELNLNPIKVPVLKHDIFEKELSFSRLNLFLYQKRTYFYRYILELPEARALSDE 594

Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
               ++G   H ++    K     N         +I +   E+E     I  +   +F  
Sbjct: 595 SKAKNQGNFIHKMLEFYYKNYSKNNFN------LKIFNDLLEQEYQKYGISELELEIFKL 648

Query: 863 ISHSFLEHEEKIQS-SIEKIFVNIPA--KMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
               F ++EE+      + I         + I++  I L G  DRID L+     I DYK
Sbjct: 649 KFIQFAKNEEEHFKLGYKVIEQEEEHHKTLNIQNHTIRLKGIVDRIDKLEDKHF-IIDYK 707

Query: 920 TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
           +G  P+K         QL+   A     + ++ 
Sbjct: 708 SGKVPEK-------SFQLAFYKALCDENAEAKF 733


>gi|28493487|ref|NP_787648.1| DNA helicase [Tropheryma whipplei str. Twist]
 gi|28476529|gb|AAO44617.1| DNA helicase [Tropheryma whipplei str. Twist]
          Length = 993

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 113/946 (11%), Positives = 238/946 (25%), Gaps = 134/946 (14%)

Query: 46  SVTIYVPTKRAIQELRS----EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
            V +  P +     L        ++    +S  L  + +            +        
Sbjct: 55  EVLVLAPGRLLANRLNGIALPALLKEKKVRSGRL--VVTPASFAFRIVQNSM--KGERPT 110

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            +S       +A  I                        S A +      +   I+ +  
Sbjct: 111 LLSGADEDQVIAETIAQNCEL---------------FKSSYARSPNFRSRMRFFIEDLSR 155

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                  L  +        W   A  +    + +       NA + V        A+   
Sbjct: 156 HGIDPAHLGKIDR------WKTYAALI----EKYRLARTSNNAFTAVEIIERA--AQLAS 203

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                   I++  +        RL S +A      I+    D     A+  + +      
Sbjct: 204 TGYLPYRVIMVDEAQELAAEHMRLFSALARRNITVILFGDPDK----AVARSASPSIFLD 259

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            S         +       +   + ++  + +G   + +  R    S             
Sbjct: 260 FSEKLFV---LKTVFRTPRNLHLLSQKICQGIGVTGSVLAHRQSFNSSIL---------- 306

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNL 398
                            V  + + +       IA   R          +  ALI   R+ 
Sbjct: 307 --------------EGRVETVISSSRATSMADIARWFREKHLLEGIDWEDMALIIFQRSS 352

Query: 399 ARRVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNAIFKL--NDFMAIATLVKHPLA 455
           A      L RFG+ + I   G+ LS    +  + + +             +  L+  P+ 
Sbjct: 353 AEVYSHFLERFGVPVQILGGGLNLSEKPIAGAILNAIELACFPDILTGKTLVKLLLSPIG 412

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
            F             L +   R    +        ++ +R+    +       Q      
Sbjct: 413 GFD------VFLMRKLTIELKRIAPKNI------QVLNERLLWAFHAYRKLQTQDTDEVY 460

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
              LA  +   + +    L++ +        +L +  W     + L              
Sbjct: 461 RVFLASRIGRSLKKIFECLISLERLYREDNVSLPVLIW--HVYSFLNLKSAVSKEPWQT- 517

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP----KIEKSSTLFIL 631
             +   + L  + +      +  K + +    +I + I    V        EK   + IL
Sbjct: 518 -SKVSHRVLEEVIALQKLADAVSKKDPLCSAGLILQKIINAEVPVDNLSIREKRGCVTIL 576

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL------SRVMQSDLNLKTAEKYIGQAA 685
               S    +  +++  +       +T  +P L      +      L  K A +      
Sbjct: 577 TPASSVGYEYRAVVITDIQGLHKMDSTQLDPELALADINNIPFSRYLESKLAGRRHNLLR 636

Query: 686 HDFEMANGTRH--------------LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
             ++    +                     +   +      S     L  +      D  
Sbjct: 637 TLYQAVTRSTSDLLVSVIDSAETSPSWLFYAFFSDYPSCELSSLPLTLRGIVTQLRLDLE 696

Query: 732 KKRGQCYLDWT------RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
           +  G               +     Q  Y              +   S + +    P   
Sbjct: 697 RDPGNTEAASALRLLAKEGISQADPQNWYGYLSRTENKSYVMDSIKPSVLDKFHTCPLGW 756

Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
           +       D +   +   + T+ GT+ H  + EL       N  E        +    + 
Sbjct: 757 F------TDQLDCNRYPGNATEIGTIIHRCMQELTCDNRQPNLNEFLDYAYAKLREA-DF 809

Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEK-IQSSIEKIFVNIPAKMAIE---SIGIHLTGF 901
           E+    +    +     I    +++           +         +       I ++G 
Sbjct: 810 ESRW--VLEREKKRLVGIIRKLVDYLIDFDAHGGTLLASEKSFSFDLNVFKDRSIMISGQ 867

Query: 902 ADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKA 946
            DR++ L SG + I D KTG +   K  A+   + QLS    A++ 
Sbjct: 868 IDRLERLSSGEIRIVDLKTGSSLLSKNDAES--NLQLSAYQLAVEH 911


>gi|183603705|ref|ZP_02716657.2| ATP-dependent nuclease subunit B [Streptococcus pneumoniae
           CDC0288-04]
 gi|183573323|gb|EDT93851.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae
           CDC0288-04]
          Length = 1099

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 120/932 (12%), Positives = 250/932 (26%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 118 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 169

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     GA ++ G
Sbjct: 170 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGAEIVIG 227

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 228 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 266

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 267 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 326

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 327 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 386

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 387 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 424

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 425 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 484

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 485 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 543

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 544 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 603

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 604 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 663

Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747
                 +  +G                  Y       D                      
Sbjct: 664 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 723

Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                      + +   K          Q    S S + +   + Y+ + R +L L    
Sbjct: 724 GLENPAIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 781

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 782 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 841

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +    IE I             + ++    + + G  DRID L
Sbjct: 842 TKEVLLDVARTT-GHILRHNPVIETIKEEANFGGKEQAFIQLDNGRSVFVRGKVDRIDRL 900

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
              G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 901 KADGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 951

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 952 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 983


>gi|289449624|ref|YP_003475637.1| hypothetical protein HMPREF0868_1380 [Clostridiales genomosp. BVAB3
            str. UPII9-5]
 gi|289184171|gb|ADC90596.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
            UPII9-5]
          Length = 1188

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 141/1141 (12%), Positives = 296/1141 (25%), Gaps = 171/1141 (14%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
               + G   +      +   +     I VP      E+   ++++ GK S +L       
Sbjct: 34   DGAVGGNEADGRSGLGVGGKVAGRGFIVVPDN-CAFEVEQHYLQLAGKGSLLL-----AE 87

Query: 83   DVVEEKFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
             +  + F   L    N+     +    +   L R++   R++LP + K +     L    
Sbjct: 88   ALGWQHFFLRLADELNVPSANLLDKSGQAALLNRILHAHRDELPFLGKLVNKRGFL---- 143

Query: 141  SPANAIWLAKNLADIIDIIETEEKKWEDLHALK------NEKYGMWWLLAADFLKIASKY 194
                       + DI+           DL AL         +         D+       
Sbjct: 144  ---------HQIQDILLEFRRYNVGAADLCALGKKLVEHPVEGLSEPEKILDW-SRLLGL 193

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            +   + E N     G    L       +       +  AG T +      +++ +     
Sbjct: 194  FESEIAENNLPDQKGRLRLLAEWLESAVKSKKARAM--AGDTAAELRDEVVLNYI---CQ 248

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
                  G+               + +   +N  +    +         L+I    ++   
Sbjct: 249  TNFWFWGIGDDYLLTGDEKRIILALSGLQANLYFYFAAESLTETTRRNLNIAGVVIENEA 308

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNT--DILENKIPNIQKCFSDVALIEADNEREEAI 372
             ++          S + +    +++       L   +        DV  +   +   EA 
Sbjct: 309  EMNGFRSSADYCFSSAAIDFVVAELPVRKVRFLPGSVALRSGSPLDVVTVTVPDMTVEAE 368

Query: 373  S-IAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
            + IA  LR+ L E    ++ A+I +D +L   + L   + G+ +  +  + LS +   + 
Sbjct: 369  TTIAELLRLHLTENIPWQEMAIICSDESLHEALNLAGQQLGVPLQDAGKLKLSDSPVFTY 428

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE----LVALRGNKNSYDI 485
            L +L +   +     A+  L++  L      E  ++                  + +   
Sbjct: 429  LNALFDLPRRNWSLPAVLNLLRSGLTGATTDEIDVAENYWLANGLGYTAIFDAKRYNSAA 488

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
             D+++ V   +             +            + D        +V +        
Sbjct: 489  TDVEADVDADVKADAAMDAAAALDTGNVLTLNAEPESVADDAAVAWQLVVKHLRPVYEFI 548

Query: 546  GNLSIS-------DWTKLTVTCLQNVCLDEHRKLPNLWFEEE-----GKTLSSLFSKIIE 593
              L +        D   L    +        R       +E       +        + +
Sbjct: 549  TALPLELPCREMLDRLNLFFQAVDLTGTLRQRMADAPAGQEILYSKGWQEFFKAARTLRD 608

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                +     +  +I+  L+   TV     + S + I    E    N   + +   +E +
Sbjct: 609  LQGDVVEQFADLGEILADLLTDLTVNIVPSRLSQVKIGSATEILSANLKVIYVLRADEEL 668

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM--------ANGTRHLIYTRSLRE 705
               +      L    ++ L       + GQ   D+          A+    + ++R+  +
Sbjct: 669  SGCSAYSG-LLRDSERAALGKLLQINWPGQHQSDYWRNASVWRRLADAASKIYFSRN--D 725

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK---------- 755
                ++  +   R  +          K        W  K      QP             
Sbjct: 726  GEFESVLQQLASRRQINLLHQVTLADKLSPNDLRYWYPKFRRQDYQPTATGEVITSLNVS 785

Query: 756  --------------------------------RPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                                              +         +  S S +++    PY
Sbjct: 786  ADGASENGGADKGWRENGASEKIHSVSRQVVLSDEMKMAALPLTQKLSVSRLEKYAACPY 845

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL--------------IKKRINKNTP 829
                  +L       +   P  TD G L H I+ +               + +   ++  
Sbjct: 846  QYLVDYLLMARPREEWN--PQVTDVGVLMHGILEKYLPMKLAENETYSMTLARLEQEDLA 903

Query: 830  EINHLMKQIIDS---------HFEKENLPPHIDIIWRHLFHK----ISHSFLEHEEKIQS 876
                 + + +D           F    +   +    +    +    I  SFL        
Sbjct: 904  GRMAEVGEWLDEYIAADSRLRAFRDAGIYSSVTRQVKRRLSRSLPAIWASFLSGAAGEHK 963

Query: 877  SIEKIFVNIPAKMAIESI----GIHLT----------GFADRI------DLLKSGFVDIT 916
                        ++           L           G  DRI      DL  +G   I 
Sbjct: 964  IFRPTAYEWAFGLSEAGGSARPPYRLRLSTGDSVDLCGKIDRIDFAMNSDLQPTGEFRIV 1023

Query: 917  DYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI- 974
            DYK+  + P        ++ QL L  AA  A            +  Y  LK K  +    
Sbjct: 1024 DYKSNRSEPNIYHIYYGLEFQLPLYIAAYAAHLRRPTGEDFQDDAGYFSLKPKTDVPQTF 1083

Query: 975  -----------TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEK--SNIQ 1021
                              +  +L +K+     E+V  L+ G       +   +       
Sbjct: 1084 SGLKKGLNKLQKEGFPVEAVSDLVKKAEFKAGELVEALRGGSFNPHPRVADYKDELPCRY 1143

Query: 1022 S 1022
             
Sbjct: 1144 C 1144


>gi|300779591|ref|ZP_07089447.1| probable helicase [Corynebacterium genitalium ATCC 33030]
 gi|300533701|gb|EFK54760.1| probable helicase [Corynebacterium genitalium ATCC 33030]
          Length = 1040

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 123/1029 (11%), Positives = 269/1029 (26%), Gaps = 81/1029 (7%)

Query: 22   IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL--PIIK 79
              A +   L++            +S+     +K +   +R E  E       +   PI +
Sbjct: 44   AGAGVTSFLIDVAAARIAAGQDPSSIVFVTASKESAARVREELSEKLTSSGFVADEPIAR 103

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            S+  +      A      +     + + RL+  A      R  L     D     P    
Sbjct: 104  SVHSLAFALLRASE----DPAVAAATLIRLISGAEQDFAIRELLQGNAADGTGSWPEE-L 158

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
                  +  A+ L D +            L  +        W  A DFL           
Sbjct: 159  RPALPMVGFARQLRDFLLRAVERTLTPGQLRDMGRTHGIPVWSAAGDFLAEYQDVMALYG 218

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                ++        L+       +  T G + I  +    PA+  L++ +    +    L
Sbjct: 219  ARSYSA------SELVAEVVRRPLPRTWGTVFIDDAQHLDPASGILVNQLIAEAD----L 268

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              +      A++           + +            +      +   D         +
Sbjct: 269  AVVGGDEEQAVFRFRGASPLFFKNLDAPTID--LGVSRRTPTARAVIAPDGAMNNAFVAD 326

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
               R+ +            +R+  ++E     + +    VA+   D    E   +A  L 
Sbjct: 327  TLRRAHLEEGVPWRDMAVVVRSVGMIEPLRRTLLQAGVPVAINPTDLVLGEQRIVAAMLL 386

Query: 380  MSLDENKKKSALITADRNLARRVKLELTRFGINI--DISAGIPLSTTLHSSILTSLLNAI 437
                 N   +          R + L        +                    +L   +
Sbjct: 387  GLRALNGLDA-------THWRELLLGPVGGADPVTLRRLLRGLRRWRPEVRAEDTLSELL 439

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                +      ++          E  +      +        + S D       VL  + 
Sbjct: 440  ALRGELPDFGAILT-------QRELDILDRIRGVL----EAGRTSLDDGGSVEEVLWAVW 488

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
             Q          +         A   +D ++        +   + +      I+   +  
Sbjct: 489  AQTGLAESLMAIALRGGAAGSQADRDLDAMMALFDAAGDFTERRPTATIEAFIAHIEEQE 548

Query: 558  V--TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS-------CIKANAIEWIDI 608
            +                        G+  + +    ++  S              + ID+
Sbjct: 549  LPTGVRDRRTAVPDAVPLLTAHGVAGREFARVIVSEVQELSWPTLSETGTLMRQEDLIDL 608

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            + + ID  T                  +     + +I+  ++     +    + F+ +  
Sbjct: 609  VDQGIDPATPVSHTVDRLKEERRLFHVAVTRATEQVIVTAVDAPDGDEVIEPSRFVQQFA 668

Query: 669  QSDLNLK------TAEKYIGQAAHDF----EMANGTRHLIY-TRSLRENNIPTIASRWLQ 717
             +   +       TA     +    F        G   +      +R   +  I +   +
Sbjct: 669  DARGTIPEHVSTGTAASGAAEQQTLFDGVDTSTTGREEVHVDVAPVRVLAVEDIVAELRR 728

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
             +     ++       R    L           Q    R          P   S S I+ 
Sbjct: 729  AITDESSSEDVKLQAARQLARLAEAGVPGADPGQWWGIREASISEGVEPPGRLSPSRIEG 788

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L+  P          +          D   RGTL H     +       N  ++      
Sbjct: 789  LLECPMR-------NVLERDVAPASSDAMTRGTLAHYFFEAV------GNGADVELAQAD 835

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
             ++++     +P   ++     F ++     +  E+ + + E +   +P  + +   G+ 
Sbjct: 836  TLEAYRALFTVPSWKEVSDLGEFTRLLGRAAQWVEETRGTFELVDTEVPVDVEVAP-GLR 894

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
            + G  DR++  +SG V I D KTG N P    A++  +PQL     AL  G+  +     
Sbjct: 895  IGGRIDRLEREESGAVHIVDLKTGKNHPSAAEAEE--NPQLFAYQLALSRGALREGTDAS 952

Query: 957  VANLFY---IRLKQKFKIDCITNDKKKYSADELSEKSLK--NLIEIVTLLQNGEQPFISH 1011
            VA       + +     I   ++  K  +A +  + + +       +  L          
Sbjct: 953  VATAGETDSLDVGGGTLIYPGSDQVKVTAAHQAPKDAEQLEEFAARIATLPAEMTGPRLR 1012

Query: 1012 LRLSEKSNI 1020
                +  + 
Sbjct: 1013 AVTGKHCDF 1021


>gi|163839982|ref|YP_001624387.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953458|gb|ABY22973.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 1080

 Score =  152 bits (383), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 113/968 (11%), Positives = 246/968 (25%), Gaps = 172/968 (17%)

Query: 136  LSLPISPANAIWLAKNLADIIDII-----ETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                 +P +       L D  + +     +      + L                  +  
Sbjct: 172  AEHLQNPRDVETWLAALRDEFEALPLNTGKGRGPAGKALELADRLDIRAH-------VAQ 224

Query: 191  ASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARL 245
              + +     + NA           +      E     +     +++     +  A   L
Sbjct: 225  MVQQYQLAKSQRNALDYGDLVALAAKLALNVPEVAEQERLKHRVVLLDEFQDTSHAQLTL 284

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
             + +     G  V    D H     +   +             +       A L      
Sbjct: 285  FAALFGA--GHPVTAVGDPHQSIYGFRGASAGQLFRFPGIFRRADGQPAETAAL------ 336

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                     N  + +   + + S+     +     ++  L    P       +V L    
Sbjct: 337  ----TVAWRNSLSILESANAMSSELNRRAEQGHAESSTQLSPLQPRPGAPRGEVELSRFG 392

Query: 366  NEREEAISIAIAL--RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
             E EEA ++A  +  R S+       A++   R   + ++  L    I+ +I     L  
Sbjct: 393  TENEEAQAVADRILARRSVRSQDVSVAILCRRRTQFQALQTALEAQNIDYEIVGLSGLLA 452

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
            T     + S L  +       A+  L+     + G  +       +   + + +  + + 
Sbjct: 453  TPEVIDVVSTLRVLVDPTRSDALMRLMTGARWRIGSKDLMALADWSKFLVASAKRARKAS 512

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
              +         +    +     +W         + A  L    LQ +  L         
Sbjct: 513  PTVIDDVAEAASLIEAIDALDADYW--------PDSARELSATGLQRLLALRDELRTLRR 564

Query: 544  TCGNLSISDWTKLTVTCL---QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
              G+  +S  +++  T L   +                +  +  +S F +  E    +  
Sbjct: 565  FVGDDLLSLISEVERTILLDIELAAKPGISYHRARHHLDAFQDAASSFLQSAERVDVLAF 624

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--------NEG 652
             A  W+        G  + P   KS  + +L    ++ L +D + + GL           
Sbjct: 625  LA--WLSAADGEEGGLEMLPVEPKSGAVQLLTVHAAKGLEWDEVYVPGLATKSFPSDRAD 682

Query: 653  VWPKNTAKNPFLSRVMQSDL--------------------------NLKTAEKYIGQAAH 686
             W       P+  R  ++DL                          +    E+ +   A+
Sbjct: 683  HWGTGNRALPWPLRGDRADLPEWKLQGEDQRTWIGELAEFTESVKDHALQEERRLAYVAY 742

Query: 687  DFEMAN-------------GTRHL--IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
                +                + +    T  +      + AS  L            +  
Sbjct: 743  TRARSFLAVSTSKFAGTSVRAKEISPFLTELVDVAEQESAASYGLGFRHWPAEQHLPEEN 802

Query: 732  KKRGQCYLDW-------------------------TRKLDYTTKQPHYKRPKPFPPLEAQ 766
             +R                                   L    +    +  +   P  + 
Sbjct: 803  PEREAVIRAQWPFDPLAGPYLKIGEKVVEPLGSRRAALLSAAQRVQAARPSELSLPELSA 862

Query: 767  PRTY------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
                                        S S + +L  +P AV A+    +   P     
Sbjct: 863  RWGIEAKRLLEQRTVRKQVIDVELPTHISASTLVELRVNPAAVVAQIRRPVPRKPGL--- 919

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                 +GT FH  +     +    +  E        ++  ++ E L  + +         
Sbjct: 920  --AARKGTAFHAWVESYFGRAGQLDLGEFPGAADDFVEDAYQLEQLRENFEASEWAAKQ- 976

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
                                + +P +  I   G+ + G  D +     G  ++ D+KTG 
Sbjct: 977  -----------------PSEIEVPIETKIA--GVVVRGRIDAVFQDADGGWELVDWKTGQ 1017

Query: 923  NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
             PK +        QL+L            I   KV   FY     + + + + +   +  
Sbjct: 1018 LPKGKELGD-RSVQLALYRLGWAR--LKGIAVEKVRAAFYY--AARNQTERVLDLAGEQE 1072

Query: 983  ADELSEKS 990
             + +  ++
Sbjct: 1073 LESIISQA 1080


>gi|254520363|ref|ZP_05132419.1| ATP-dependent nuclease subunit AddB [Clostridium sp. 7_2_43FAA]
 gi|226914112|gb|EEH99313.1| ATP-dependent nuclease subunit AddB [Clostridium sp. 7_2_43FAA]
          Length = 1145

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 112/943 (11%), Positives = 254/943 (26%), Gaps = 140/943 (14%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              +  ++ +I   +      E L + ++E            LK+    + E L       
Sbjct: 120  GFSSIVSKVITEFKKYNISGEILSSKEDEINDEELKKKISDLKLIFNSFNEIL-HKRFID 178

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                   L +   +         I I   T   P    ++  +A       +    D   
Sbjct: 179  SDDELTFLAKRLKD-CNIYDDAEIWIDEFTTFTPQQLEVIKVLAKKAKVVNITLCSDSLS 237

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
              +  +          + N+           +++   +I   +   L    +  +  +  
Sbjct: 238  GGSDIDYTDIFDAIKNTENSIL---------RIMKEGNISYLEPIDLNKGQSYRFLNNED 288

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
            +        T   +            +   ++V + +A+N  +E   +A  +   + +N 
Sbjct: 289  LQHLERHFFTYPFK----------EYKGKANNVRIYKANNSYDEVEVVAKDILRMVRDNG 338

Query: 387  ---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               K  A++  + +   ++       + I   I     +       ++ S L  +     
Sbjct: 339  YRFKDIAVVCRNIDEYEKISTVIFNEYNIPFFIDKKREILNNPLVVVIISSLEILASNWS 398

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            + ++   +K  L         +         +            +  S   + I      
Sbjct: 399  YESVFKYLKSGLVNVERDYIDILENYILANGIKGYKWTKDLYDKENISEEENTIIEIMEE 458

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
               P  +     + K        ++ + +  L  +KT          +  W +   +   
Sbjct: 459  IRSPLMKLHNRIKGKNKVRDFATNLYEFLNELNVFKT----------LEVWLEEFNSL-- 506

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                    +     + +  + +  +  +++E       +  E+  I+    +   +    
Sbjct: 507  ------GLQDKIKEYIQVPEMVIEILDQVVEVLGDEVLDIKEFTKILISGFEEREIGVIP 560

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLK 675
                 + I      +      L L G+N+GV P    +   +S   +         L   
Sbjct: 561  MSLDQVNIGDISRVKGREVKALYLIGVNDGVLPAANKEEGIISDRERELLRNIGIRLASD 620

Query: 676  TAEKYIGQAAHDFEMANGTRH-LIYTRSLRE-NNIPTIASRWLQRL----LVLGGTDFFD 729
            T  +   +    +         L+ T  + +        S  + RL      +       
Sbjct: 621  TKIRAFEEQFIVYTALTIPSEYLMVTFPMADFEGKSLRPSIIIPRLKKVLPNVVEESEIY 680

Query: 730  NLKKR-----------------------------GQCYLDWT------------------ 742
            N++ R                                Y                      
Sbjct: 681  NIRDRRDKFNKITAPTPTFNELISALRMEFEKENVDEYWAQAFKWFENNEEFKNKSNRMF 740

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTY--SFSEIKQLINDPYAVYARRILKLDFIPHFK 800
            + L YT       R K     +++ +    + S I++    P++ Y +  LK        
Sbjct: 741  KGLTYTNLVEKIPREKIKRLYQSENKKLIFNVSRIEKYAQCPFSYYVQYGLKAKDRK--V 798

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ---IIDSHFEKENLPPH------ 851
             +    D G+  HN++ +      N+     +   ++   I++   +K            
Sbjct: 799  YEFSAPDLGSFMHNVLDDFTNTVRNEKIAWSDLNRERCKVIVNELVDKRLESDSNSILNS 858

Query: 852  --IDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIH---------- 897
                  +   F +       +  E+  +   E            +   I           
Sbjct: 859  TKKYKYFADRFKRTITKSVMVISEQMRKGKFEVFKNEFAFGGFSDGEPIKIDLPSNETVY 918

Query: 898  LTGFADRIDLLK-SGFVDI--TDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQI 952
            L G  DRID L   G   I   DYK+G            +  QL +   A +K   +   
Sbjct: 919  LVGRVDRIDTLDLDGNTYIKIVDYKSGAKKFNLTEVYYGLQIQLLVYLDALIKNSKYILQ 978

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                   + Y R+      D I   KK+ + +E+ +  LK L 
Sbjct: 979  KQAMPGAILYFRID-----DPIIKSKKQLTEEEIKDNILKELK 1016


>gi|189218844|ref|YP_001939485.1| Inactivated superfamily I helicase and RecB family exonuclease
           [Methylacidiphilum infernorum V4]
 gi|189185702|gb|ACD82887.1| Inactivated superfamily I helicase and RecB family exonuclease
           [Methylacidiphilum infernorum V4]
          Length = 923

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 80/603 (13%), Positives = 165/603 (27%), Gaps = 103/603 (17%)

Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
           +   + + +      +   +  +L   GI+    +GI    T        L   +     
Sbjct: 282 ENYGEATTIGLCRSKVVSLLACKLRSSGIDFLNYSGISYKETPFYDFFLQLRELLQDP-S 340

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
           +   ++  + PL+                        K      +     LDR+AT+   
Sbjct: 341 WTKFSSWARSPLSYEWI-------------------GKKQKGKSEEFLSFLDRVATRSIA 381

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
             +  +     +   E+  L+   I    TP                   W K  +  L 
Sbjct: 382 PSLSDFFESSQQSSFEVLGLIRSFIEDLRTP------------------QWPKRLLNFLA 423

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
            V  +       +  +        +                 ++ ++   ++ E+   + 
Sbjct: 424 VVLEESSSFAGEMVEQWADFIGKRIDRFCSLASVNAFHGCSPFLSLMLDEMNEESFFFET 483

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
           E    L + G LE    +   L+L G  E   PK    +  L+  ++  + LKTAE+ + 
Sbjct: 484 EGDPKLELKGWLELLWDDSMHLVLAGFQERDVPKAIEPDFILTDEIRKKVGLKTAERRMA 543

Query: 683 QAAHDFEMAN-----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
           + +            G R  ++     +     + SR L R                 + 
Sbjct: 544 RDSLLLAFLVNRLSKGARLDVFLSKFDQQGELLLPSRLLFRQK--------------AER 589

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPL-------EAQPRTYSFSEIKQLINDPYAVYARRI 790
                  L  +       +PK  P              + S S +   ++ P+  Y +  
Sbjct: 590 LARRVDFLFRSLPSKTIPKPKTSPFKLKLPSVGWKSEESLSVSALNDYLSCPFYFYLKHR 649

Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN---HLMKQIIDSHFEKEN 847
           L    +   + +    D G + H ++    +        + +     ++  ++    K  
Sbjct: 650 LGWQPVVLPQGELLEADFGKVLHEVLAVFGENFKGVELEDPSLIFSFLEDQLEKVLTKSY 709

Query: 848 LPPHIDIIW------RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
                  +              +    +     +       V    ++ IE   + + G 
Sbjct: 710 GKDRTLGLQFQQKAMWARLKSFASFQAQW---SREGWRIWAVEKKFELEIE--NVKVRGR 764

Query: 902 ADRIDLLKSGFVDITDYKT-----------GDNPKKET-------------AQKLIDPQL 937
            DRID  K     I DYKT           G     E                + ++ QL
Sbjct: 765 IDRIDK-KDEQFLIIDYKTTEPREPFGSHLGMPRSTEQWPPAEAYFSFQGKKWRWLNFQL 823

Query: 938 SLE 940
            L 
Sbjct: 824 PLY 826



 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 84/273 (30%), Gaps = 33/273 (12%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
              PF   +   L+        R         +   + VPT  + + L     +I+ K+ 
Sbjct: 10  WQDPFPLLVAQWLIANCGRNWERCP-----DFSDCLVLVPTALSGKMLIEAL-KISLKRG 63

Query: 73  TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
            + P+  +   + E           +     + ++R L        W N L    ++   
Sbjct: 64  FVPPLTLTPMALFEVH----PDSWLDFRKVPTRLERKLL-------WVNVLHRAFQNRLL 112

Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
                      N + LA  L    D +  +E   +DL ++               L++  
Sbjct: 113 GPWALEGEDFENLLSLAGVLVRAQDELAEKEMTLKDLASI-------HEEELFKNLQLLE 165

Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
             + E L +     P+ +  +L++   E  +      +I+AG     P   + +  +   
Sbjct: 166 SIYFETLEKWGFLDPLSHLRSLLQ---EPKLPPGIKRLIVAGCLDPHPLAVKFLEGLKEL 222

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
           P   ++LPG         W  + +         
Sbjct: 223 PAIEVLLPG------EKSWAGLFDAQGLPVEER 249


>gi|225861092|ref|YP_002742601.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298502848|ref|YP_003724788.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727786|gb|ACO23637.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238443|gb|ADI69574.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 1099

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 118 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 169

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 170 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 227

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 228 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 266

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 267 SQTHEKMDSFDKASRLLESSYDFSELALDIDEKDRENLQIWSCLTQKEELELVARSIRQK 326

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 327 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 386

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 387 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDSFEQYIRYLG 424

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 425 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 484

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 485 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 543

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 544 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 603

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 604 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 663

Query: 725 TDFFDNLKKRG----------------------------QCYLDWTRKLDY--------- 747
                 +  +G                            +  L + + L           
Sbjct: 664 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDIERDLTFVKVLSRVIGKKLDLQ 723

Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                      + +   K          Q    S S + +   + Y+ + R +L L    
Sbjct: 724 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 781

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 782 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 841

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 842 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 900

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 901 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 951

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 952 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 983


>gi|118587591|ref|ZP_01545015.1| ATP-dependent deoxyribonuclease, B subunit [Oenococcus oeni ATCC
            BAA-1163]
 gi|118432042|gb|EAV38784.1| ATP-dependent deoxyribonuclease, B subunit [Oenococcus oeni ATCC
            BAA-1163]
          Length = 1161

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 120/1010 (11%), Positives = 289/1010 (28%), Gaps = 160/1010 (15%)

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
            L   +    P   LS+    A       N+A+ +  I        ++  L          
Sbjct: 101  LVGQVLRELPIEKLSIFARSARMPGFVANVAEQLLEIWRSGLTATEILPLHQLDDR--LS 158

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                 L +        L + +         A   +E +             G +G   + 
Sbjct: 159  EKIKVLALIETKILPSLKDYSLPDDALRNFATKISEIDLKNCNFY----FEGFSGFTASE 214

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
              L+  + +    A +           + + + E+  +       +   P          
Sbjct: 215  LSLVKALISADRKAQLGNN-----SEIVLSLLGEQQNDRYGEGNLFYK-PNQLFKNEFSS 268

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
              ++     R  + S   + RS                  ++      + ++ F    ++
Sbjct: 269  ARVQIVSNTRSLSESQLNFERS----------------WRELETQGFTSRKRSFPQTQIV 312

Query: 363  EADNEREEAISIAIALRMSLDENKKKSA-----LITADRNLARRVKLELTRFGINIDISA 417
             + ++  E   +A ++R  L ++ K  A     L          +     R+ +   +  
Sbjct: 313  VSSDQEHEIDFVARSIRQRLLDSPKLRAKDILILAQRLGGYKNIIPKIFDRYDLPYFLDK 372

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
               +S    +S++ +LL        +  I  + +  L  +   + + +        +   
Sbjct: 373  DTRMSDHPLASLIENLLG-SSNEFAYDRIMKIFRTGLLSWQLKDDFQTTLDYLENYLLAN 431

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VT 536
              K      +   L+      Q ++    +   ++  +   L   +   I++ +      
Sbjct: 432  NPKEKVWRQEEFQLI------QISDEQDLNDDQKIDRQINALINRMRLFIIKVLDDFQEK 485

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
            +   +N      ++ +W          +          L   +  K   S  +++ +   
Sbjct: 486  FAKVENYHQAVKTLYNWLTDQQIDQVLLDQANVGDDRGL---QTWKLFLSTLNEVDQLIG 542

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
              K +  +++ I+       +          + +  +   +  +F  L     ++   P 
Sbjct: 543  DKKYSQKDFLQILKDGFAAASFAGIPASLDQITVSESGIVQRNDFKVLYFIDASDASLPA 602

Query: 657  NTAKNPFLSRVMQSDL--------------NLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
             T  +  +    +  L              +    E           + + T  + ++ S
Sbjct: 603  QTNSSSLIDDFDRLQLIDDFSKAQKAYYLQDTSRQEMTAENFRFYSSVLSATDSVTFSYS 662

Query: 703  L-RENNIPTIASRWLQRLL----VLGGTDFFDNLKKRGQCYLDW-------TRKLDYTTK 750
              R +      S +L+RL              +L +     +D+          L  T +
Sbjct: 663  KLRLDGKQNELSPYLRRLALKNVSDLEIKKIPDLPRSQADLVDYLGTANSSAAILSQTAQ 722

Query: 751  --------------------------------QPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                                            QP   RP+    L  +    S S+I++ 
Sbjct: 723  NFGEDFIDGLSDLLIKRNPYFQKILQALHYTNQPVTLRPELINKLFGEDLRLSISQIEKY 782

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
             ++PY  + +  L+L     F    D    GT +H+I  ++I + I+K T         +
Sbjct: 783  YSNPYEYFLQYGLRLKKRNQF--TVDAALSGTYYHSIFEQVINRLIDKRTD-----FHDL 835

Query: 839  IDSHFEKENLPPHIDIIWRHLFH---------KISHSF---------LEHEEKIQSSIEK 880
             D   E  +     D+I    F           ++ S          L H+    ++   
Sbjct: 836  SDQELENLSQKSAHDLIELPDFQILQSDDHFRAVAQSLTNDVLLTLKLMHKANRLNNSHP 895

Query: 881  IFVNIPA---------KMAIESIGIH--------LTGFADRIDLLKSGFVD--ITDYKT- 920
            I   +           + ++  +           L G  DRID      +   I DYK+ 
Sbjct: 896  IKTEVVFGKLSTDQQQEQSLSGLDFTLANGRKIYLRGKVDRIDQQDLEHIFGTIIDYKSN 955

Query: 921  GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
            G       A    + QL     AL   S S++   +     +++++ K          + 
Sbjct: 956  GKVFDFRDAYVGTELQLLTYWLALSKNS-SRVGINQPGGAVFVQIRNKPVDISQALAHQI 1014

Query: 981  YSADELSEKSLK-----NLIEIVTLLQNGEQPFISHL---RLSEKSNIQS 1022
                 + +++ +         ++      +Q ++++L      +K+   +
Sbjct: 1015 QLDQLIGDRAEQQIPDFQFHGLLLD----DQNYLANLQTISAGQKAKYYN 1060


>gi|225858939|ref|YP_002740449.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae 70585]
 gi|225721378|gb|ACO17232.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae 70585]
          Length = 1091

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748
                 +  +G                + + ++                       LD  
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715

Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             +       P                 Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|183603483|ref|ZP_02717219.2| ATP-dependent nuclease subunit B [Streptococcus pneumoniae
           CDC3059-06]
 gi|183576516|gb|EDT97044.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae
           CDC3059-06]
          Length = 1099

 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 120/932 (12%), Positives = 252/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 118 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 169

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     GA ++ G
Sbjct: 170 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGAEIVIG 227

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 228 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 266

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 267 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 326

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 327 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 386

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 387 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 424

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 425 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 484

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 485 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 543

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 544 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERKNLNQT 603

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 604 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 663

Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747
                 +  +G                  Y       D                      
Sbjct: 664 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 723

Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                      + +   K          Q    S S + +   + Y+ + R +L L    
Sbjct: 724 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 781

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 782 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 841

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 842 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 900

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 901 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 951

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 952 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 983


>gi|301794253|emb|CBW36674.1| putative ATP-dependent exonuclease subunit B [Streptococcus
           pneumoniae INV104]
 gi|332203006|gb|EGJ17074.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae GA47901]
          Length = 1091

 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 120/932 (12%), Positives = 253/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752
                 +  +G    D                                 +R +     Q 
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715

Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             + P                       Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|239917998|ref|YP_002957556.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|281415826|ref|ZP_06247568.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|239839205|gb|ACS31002.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
          Length = 1145

 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 118/1021 (11%), Positives = 243/1021 (23%), Gaps = 121/1021 (11%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT---GKKSTILPIIKSLG 82
            +            L+P  L    +  P++ A   LR          G+ +  +  +++  
Sbjct: 66   VAVEYAARRIEAGLDPESL---LLLAPSRDAAARLRDALTRRLAAAGRGTRAVTPVRTWS 122

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP-ESPLSLPIS 141
                +               +    RLL  A    +    L      L            
Sbjct: 123  SYAFDLLRR--ARVTGPLRHLEVAPRLLTGAEQDTVIAELLEGYAAGLAAAPDWPDDVAP 180

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
               A    + + +++D +     +   L  L        W  AA  L+         + E
Sbjct: 181  AVEARGFRREVRELVDRMSELGLEPGRLQELGTAHGRPEWEAAAVLLQDYRDRIDLGMAE 240

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
              A    G   A +R   E   +  +                 ++  V +       +  
Sbjct: 241  --AFDAAGLLSAAVRVLTERHPEDPERDAAAQAFVAEERDRLAVL-VVEDLHEATPAVHD 297

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            L   +       +T                       +LD   +         +    + 
Sbjct: 298  LLSVLGRGRDVLLTASPDTTVEGFRGARPDLLARYPGVLDPDPVPGAAPPASPDGRVRVL 357

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPN------IQKCFSDVALIEADNEREEAISIA 375
             R   +            R        +               V          E   + 
Sbjct: 358  TRGHRMRAEVQDAYLRVARRVRQRTAGVERTRTETVPADGDGAVRAHVVPTRAHEDQLVL 417

Query: 376  IALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILT 431
              +     E+     +  ++    +    +   L   G+ +    AG+ L      + L 
Sbjct: 418  ERVLRVHHEDGVPLDRILVVARSGSRVAALARHLEAEGVPVLRDAAGLVLKEEPAVAPLL 477

Query: 432  SLLNAI-----------FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            +LL+A              + D   +  L+     ++G       R      L A RG  
Sbjct: 478  TLLDAAGALAEDPEARVENVFDPDEVVGLLTG---RYGMASALHVRRLRQDLLAAERGRG 534

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                   L +  L   +             R+    ++             T L    + 
Sbjct: 535  GRRTSDALLAAALLDPSLAGPEHERHRALRRVHWMLRDGLEAARAPSASPETVLWALWSA 594

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                    S++          +     +             K       +         A
Sbjct: 595  SGRAERWRSLALRPAEHANDRRESRRADADLDA---VVALFKVAERFVDQFPGASPESFA 651

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
              +E  D+    +       + E    + +     +    +DT+I+ GL EGVWP    +
Sbjct: 652  VYMESQDLPVDTLA-----RRAESGDAVHVRTPAAAAGQEWDTVIVVGLQEGVWPNTRLR 706

Query: 661  NPFLSRVMQSDLNLKTAE--------------KYIGQAAHDFEMANGTRHLIYTRSLREN 706
               L      DL    A+              +          ++   R ++ T     +
Sbjct: 707  GQLLGATDLVDLVTLPADAPWPTDHRTRLREVRQDELRMLAAAVSRARRQVVATAVRSPD 766

Query: 707  NIPT----------------IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
              P+                  +  ++RL V+        L  R +  L+   + D    
Sbjct: 767  EGPSDFLDLVDPPERLPAEARDAAGVRRLTVVPDPITAPALVGRLRRVLEAGDETDAADG 826

Query: 751  Q----------------------------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
                                                     E +    S S ++  + +P
Sbjct: 827  ATPRAAAAGLAVLAADGVGVADPRRWWGLLPLSTEAALVDPEREVVALSPSRVETALRNP 886

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                   +                  GTL H++     +        E+   + ++    
Sbjct: 887  LDWVLYHV------GANAGGTLAQSVGTLVHSVAEHHPEGVPEDVRAELERRLPELG--- 937

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLE-HEEKIQSSIEKIFVNIPA--KMAIESIGIHLT 899
                     I  I       +  +++        +    +   +     +      + +T
Sbjct: 938  ----LPEGWITEIEHDRARGLVDAYIGYWSIARAAGRRPVAQEVRLLADLTWGGTTVRIT 993

Query: 900  GFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
            G  DR++    G   I D KTG   P      +   PQL+    A++AG    +      
Sbjct: 994  GVVDRLEADAQGRPFIADLKTGRSAPTGAEMAR--QPQLAAYQVAVRAGGLEPVRDDPAT 1051

Query: 959  N 959
            +
Sbjct: 1052 D 1052


>gi|111023339|ref|YP_706311.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
 gi|110822869|gb|ABG98153.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
          Length = 1115

 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 116/1039 (11%), Positives = 259/1039 (24%), Gaps = 152/1039 (14%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST--ILPIIKSLGD 83
            +   +V       ++P     V     T++A Q+L +   +   + +   +L  +   GD
Sbjct: 48   MAARVVWLVANGVVDPEA---VLGLTFTRKAAQQLTARIRKRLARLAGSDLLRRVDPSGD 104

Query: 84   VVEEKFTADL------------LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            +       +             L  + L  P+     LL    L  +    +     DL 
Sbjct: 105  LRSRILAGEPEVSTYHSYAGRLLSEHGLLLPIEPSATLLSETELWQLAHRVVSSWDGDL- 163

Query: 132  PESPLSLPISPANAIWLAKNLADII---DIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188
             ++  +        + L+  LA+ +   D +     + + L                + L
Sbjct: 164  -DTDRNPASVTEAVLALSGQLAEHLVEPDDLREAHTELDKLVHTLPAGPRQRGGPGKELL 222

Query: 189  KIA------------SKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPII 231
             I              +   + L    A           R  A+H       +     ++
Sbjct: 223  DILDTQHRRVELLPLVQRLADTLRREGALDFGSQMSLAARVAADHPEVGLAERTRFRVVL 282

Query: 232  IAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            +     +  +   L+S++          +    D       W   +  +    +++   +
Sbjct: 283  LDEYQDTGHSQRVLLSSLFGGGLDGELALTAVGDPMQSIYGWRGASAANLPRFATDFPLA 342

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                    +LL       E +      S  +  R + +S                     
Sbjct: 343  NGDPAPTLELLTSWRNPPEALALANMASASLRERGVSVSTLR------------------ 384

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLD------ENKKKSALITADRNLARRVK 403
               Q    DV L    +  +E   +A  +           E+   +A++      A  + 
Sbjct: 385  ARPQAVPGDVRLALTGDVVQEREWVADRIAEQYADATSRGEDPPTAAVLIRRNADAAPIA 444

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L   G+ +++     L  T   + + ++L  +       A   ++    A++      
Sbjct: 445  EVLRSRGLPVEVVGLGGLLHTPEVADVIAMLRVVADPMAGSAAVRMLTG--ARWQIGAAD 502

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
            L+        +A+     +   +   S + D +       H        +  D   A   
Sbjct: 503  LTALSRRASELAIGTGYGTTGAVTDSSALADAVGQALPGEHAEQAGLADALADPGPAERY 562

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                   IT +     +     G   +++        L      + R   +       + 
Sbjct: 563  SQVGYARITAVAAELASLRERIG-QPLTELVAEVERALGIGIEAQARTRRSARGSAGREH 621

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEKSSTLFILGTLESRLLN 640
            L +    +    S   A     +  ++       G            + +L    ++ L 
Sbjct: 622  LDAFADVVAGYASRTSATVTGLLAFLSAGESVEKGLAPGEVEVDPHRVQVLTVHSAKGLE 681

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSR---------------------------------- 666
            ++ + +  L  GV+P  TA   +L                                    
Sbjct: 682  WEVVAVPHLTAGVFPSRTASGSWLGAVGELPPSLRGDRARPGESADGVPVLELENLYDRK 741

Query: 667  ---VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE----NNIPTIASRWLQRL 719
                         A + + +    F +A      +   S          P   S +L  L
Sbjct: 742  DLEEAVKAHKAALAARKLDEDRRLFYVALTRTERVLFASGHHWAESGTEPKGPSEFLTEL 801

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                  +  + +            + D         +   +P      R  S      L+
Sbjct: 802  RDTVTDEEHEGI--GIVDIWAPAPEPDEQNPLTSTPKSAVWPRDPLGLRRESVERGAALV 859

Query: 780  ----------------NDPYAVYARRILKLDFIPH-------------------FKKDPD 804
                            +DP    A     L                         + + D
Sbjct: 860  VAALKRAGAPTPAGEDDDPENWAADVDALLAEREARANARTEVVLPGQLSVSQLVELEAD 919

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
                       +         + T     + ++   +     +  P            ++
Sbjct: 920  PDALAARLRRPLPFPPNPLARRGTAFHAWVERRFGATRLLDLDELPGAADTDAGPDTDLA 979

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924
                       +      V +P + ++      L G  D +     G   + D+KTG  P
Sbjct: 980  TLQDAFLRSSWADRNPTEVEVPFETSVAGT--VLRGRIDAVFTDPDGGWTVIDWKTGAEP 1037

Query: 925  KKETAQKLIDPQLSLEAAA 943
                 +K +  QL+    A
Sbjct: 1038 SAAN-EKAVVMQLAAYRLA 1055


>gi|295396965|ref|ZP_06807087.1| possible ATP-dependent deoxyribonuclease, subunit B [Aerococcus
            viridans ATCC 11563]
 gi|294974818|gb|EFG50523.1| possible ATP-dependent deoxyribonuclease, subunit B [Aerococcus
            viridans ATCC 11563]
          Length = 1242

 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 113/1011 (11%), Positives = 251/1011 (24%), Gaps = 176/1011 (17%)

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWE-DLHALKNEKYGMW-----WLLAADF 187
              L +     + I   + LAD+   +   +   +  L++L + +          +     
Sbjct: 117  DDLLVYRGEYDQIGFVEALADLFKELVNGQITSDVFLNSLSSYESSDQPLVQNQVKKMKE 176

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            L      + + L  L  +      +     +       +K  III G           + 
Sbjct: 177  LAAIYGEYEKYLAGLTMADQ---NVFAQLRQVISDQDLSKTRIIITGFDYFNAQELETIV 233

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
                +     ++  LD                  T       T    +  +L+ F+    
Sbjct: 234  AFLENCPQVQIVLNLDQPYD------------FRTPDWYELFTVTGKTYNQLMQFVR--- 278

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI----E 363
               + +   +  +   +   +  F   D     +  I   ++       + V  +    E
Sbjct: 279  --KQEIPFANPIVAESNNSYADGFKVLDHYLRTDNRIESGQVAQTDPAKTAVNQVMEIWE 336

Query: 364  ADNEREEAISIAIALRMSL-----DENKKKSALITADRNLARRVK-LELTRFGINIDISA 417
              +   EA  +A  +   +     D   K   +++ D +  +      L    I    + 
Sbjct: 337  VPSTHMEADQVANEIYRLVSDPNTDYRYKDIQILSRDEDTYQHALQAALDANEIPYFANF 396

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF------------------ 459
               ++      ++ SL         +  +  L++  L                       
Sbjct: 397  QEDMALHPLYRLMMSLYRVYQGNWRYQDVFDLLRSELLTPVDLDVLADWNGPTFDSVGAV 456

Query: 460  ---------PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
                      +     A +  E V LR             +    +  +           
Sbjct: 457  SDELSASKKGQIQFRDAIDLTENVVLRNGYEGQFWWSKDRIWSYILVGEDGEKIGTKRDI 516

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLTVTCLQNVCLD 567
             +     ++   +V  +          +T + +                 +    +    
Sbjct: 517  AIEATANQVKAFVVGALSPLFDNWKKDQTTEAAITYFYQFLTNNGIPTNLMNWRDSYLEA 576

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
               +      E+  +T   +    +        +   +  I+       +          
Sbjct: 577  GQLQEARQ-HEQAWQTFIHMLDDYVLLFGEEAFDLEYFFKILDLAFQNASYATVPPTMDA 635

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS------------DLNLK 675
            + I    E+++       L G+++   P    +   L+   +               +  
Sbjct: 636  VTIGSFDENKVDAKKITFLLGMSKYALPVVYEEKSLLTNEDRQLVVSQLDDLQALKQSAD 695

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQR-----------LLVLG 723
            +        A+     + T HL  +  L   +  T   S  + R           L    
Sbjct: 696  SKNNNEAYKAY-LAFLSATDHLYISYPLNNGDADTEGLSPMIGRIAEAFDIQTKYLRQPS 754

Query: 724  GTDFFDNLK----------------KRGQCYLDWTRKLDYTTK----------------- 750
                   L                  +         ++                      
Sbjct: 755  DHAAEKTLLKLGNGHTQVRYLLKAMAQDAHGQQRLSQIWRPVYDQVVSNQSVAGFFKWLQ 814

Query: 751  -------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                         P+    L       S S+++    DP++ Y +  LKL   P F+   
Sbjct: 815  SSLTYHNTVLPLTPELSRSLYGDILAVSVSQLELYNRDPFSYYLKYGLKLKERPSFQ--L 872

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKENLPP---------- 850
            D    G  FH ++    K+   K+       +  +K I+    +K N P           
Sbjct: 873  DSLQTGNYFHEMLDHFFKEVNQKDFDLANLSDGEVKGILGEVTDKLNDPDVYPEYTIFKV 932

Query: 851  -HIDIIWRHLFHKISHSFLEHEEKIQS--SIEKIFVNIPAKMA---------------IE 892
             H +   +    +     +E+  K +   ++E I                          
Sbjct: 933  NHRNSYLQESMKETIQLLIENIIKQRQAVNVETIETEQRFGYTQNEDEEEETITHFTLAN 992

Query: 893  SIGIHLTGFADRIDL-------LKSGFVDITDYKTGDNPKK-ETAQKLIDPQLSLEAAAL 944
               + L G  DRID        LK  F+ + DYK+  +  K +        QL       
Sbjct: 993  GQEVRLRGKIDRIDAVSQVESGLKQNFIQVVDYKSSAHDVKFDQIYVGSQLQLYTYLKVA 1052

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                            FY R+   F+       +   +   ++++ L +L 
Sbjct: 1053 LDQLNQDGQTALPLGAFYQRI---FQPQVKIKKQTDLTDKNIADQILADLK 1100


>gi|149025504|ref|ZP_01836437.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP23-BS72]
 gi|147929376|gb|EDK80373.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP23-BS72]
          Length = 1091

 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 121/931 (12%), Positives = 247/931 (26%), Gaps = 145/931 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKISSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLTNLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                       +S   + + E   +L   IL  +  L   +  K             + 
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWNVFLKEG 476

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            VT            +      E  K    +  +     +  + +  +++ ++   +   
Sbjct: 477 VVTKQLQDLTATMEAIEQERQAEVWKAFCHVLEQFATVFAGSQISLEDFLALLHSGMSLS 536

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
             +       T+ +        L  D +   GL +   PK       L+   + ++N  T
Sbjct: 537 QYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKIAQNTSLLTDEERQNINQAT 596

Query: 677 AEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLG-- 723
            E      A       + + M +      + L+ +     N   +  S +LQ L+ LG  
Sbjct: 597 EEGVQLLIASSENLKKNRYTMLSLVNSARKQLVLSAPSLFNESESKESAYLQELVHLGFS 656

Query: 724 --------------------------------GTDFFDNLKKRGQCYLDWT--RKLDYTT 749
                                           G              L     +KLD   
Sbjct: 657 RKEKRMNHKRLSKEDMGSYHSLLSSLVAYHQQGETSDTEQDLTFVKVLARVMGKKLDQQG 716

Query: 750 KQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
            +       P                 Q    S S + +   + Y+ + R +L L     
Sbjct: 717 LENPALPTSPSSKQLTKDTLQALYPAEQEFYLSTSGLTEFYRNQYSYFLRYVLGLQ--EE 774

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIW 856
            +  PD    G   H I    ++     +         Q    +  FE            
Sbjct: 775 LRLRPDARSHGNFLHRIFERALQLPDEDSFDNRLEQAIQETSQEREFEAIYQESLEAQFT 834

Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL- 908
           + +   ++ +   H  +    IE I             + ++    + + G  DRID L 
Sbjct: 835 KEVLLDVARTT-GHILRHNPVIETIKEEANFGGKEQAFIQLDNGRSVFVRGKVDRIDRLK 893

Query: 909 KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
             G + + DYK+         Q       ++ QL    AALK                Y+
Sbjct: 894 ADGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMYL 944

Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            + +  +             +       + L
Sbjct: 945 EMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|183603905|ref|ZP_02722998.2| ATP-dependent nuclease subunit B [Streptococcus pneumoniae MLV-016]
 gi|183603908|ref|ZP_02723035.2| ATP-dependent nuclease subunit B [Streptococcus pneumoniae MLV-016]
 gi|183603909|ref|ZP_02723046.2| ATP-dependent nuclease subunit B [Streptococcus pneumoniae MLV-016]
 gi|307067687|ref|YP_003876653.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae AP200]
 gi|183577185|gb|EDT97713.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae MLV-016]
 gi|183577192|gb|EDT97720.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae MLV-016]
 gi|183577243|gb|EDT97771.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae MLV-016]
 gi|306409224|gb|ADM84651.1| ATP-dependent nuclease, subunit B [Streptococcus pneumoniae AP200]
          Length = 1099

 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 251/932 (26%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 118 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 169

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 170 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 227

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 228 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 266

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 267 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 326

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 327 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 386

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 387 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 424

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 425 INGLPAFQQIFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 484

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 485 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 543

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 544 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 603

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 604 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 663

Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747
                 +  +G                  Y       D                      
Sbjct: 664 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 723

Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                      + +   K          Q    S S + +   + Y+ + R +L L    
Sbjct: 724 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 781

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 782 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 841

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 842 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 900

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 901 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 951

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 952 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 983


>gi|226365847|ref|YP_002783630.1| ATP-dependent DNA helicase [Rhodococcus opacus B4]
 gi|226244337|dbj|BAH54685.1| putative ATP-dependent DNA helicase [Rhodococcus opacus B4]
          Length = 1120

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 117/1039 (11%), Positives = 259/1039 (24%), Gaps = 152/1039 (14%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGD 83
            +   +V       ++P     V     T++A Q+L +   +   +   S +L  +   GD
Sbjct: 48   MAARVVWLVANGVVDPEA---VLGLTFTRKAAQQLTTRIRKRLARLAGSELLRRVDPSGD 104

Query: 84   VVEEKFTADL------------LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            +       +             L  + L  P+     LL    L  +    +     DL 
Sbjct: 105  LRSRILAGEPEVSTYHSYAGRLLSEHGLLLPIEPSATLLSETELWQLAHRVVSSWDGDL- 163

Query: 132  PESPLSLPISPANAIWLAKNLADII---DIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188
             ++  +        + LA  LA+ +   D +     + + L                D L
Sbjct: 164  -DTDRNPASVTEAVLALAGQLAEHLVEPDDLREAHTELDKLVHTLPAGPRQRGGPGKDLL 222

Query: 189  KIA------------SKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPII 231
             I              +  T+ L    A           R  A+H       +     ++
Sbjct: 223  DILDTQHRRVELLPLVQRLTDTLRREGALDFGSQMSLAARVAADHPEVGVAERTRFRVVL 282

Query: 232  IAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            +     +  A   L+S++          +    D       W   +  +    +++   +
Sbjct: 283  LDEYQDTGHAQRVLLSSLFGGGLDGELALTAVGDPMQSIYGWRGASAANLPRFATDFPMA 342

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                    +LL       E +      S  +  R + +S                     
Sbjct: 343  NGDPAPTLELLTSWRNPPEALALANVASASLRERGVAVSMLR------------------ 384

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLD------ENKKKSALITADRNLARRVK 403
               Q    DV L    +  +E   +A  +           E+   +A++      A  + 
Sbjct: 385  ARPQAVPGDVRLALTADVVQEREWVADRIAEQYADAASRGEDPPTAAVLIRRNADAAPIA 444

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L   G+ +++     L  T   + + ++L  +       A   ++    A++      
Sbjct: 445  EVLRSRGLPVEVVGLGGLLHTPEVADVIAMLRVVADPMAGSAAVRMLTG--ARWQIGAAD 502

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
            L+        +A+     +   +   + + D +       H        +  D   A   
Sbjct: 503  LTALSRRASELAIGTGYGTTGAVTDSAALADAVGEALPGEHAEQAGLADALADPGPAERY 562

Query: 524  VDHILQCITPLVTYKTNKNSTCG--NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                   IT +     +     G     +    +  +           +        E  
Sbjct: 563  SQVGYARITAVAAELASLRERIGQPLTELVAEVERVLGIGIEAQARTRQSARGSAGREHL 622

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
               + + +      S      + ++     +  G            + +L    ++ L +
Sbjct: 623  DAFADVVAGYANRTSATVTGLLAFLSAAESVEKGLAPGEVEVDPHRVQVLTVHSAKGLEW 682

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSR----------------------------------- 666
            + + +  L  GV+P  TA   +L                                     
Sbjct: 683  EVVAVSHLTAGVFPSRTASGSWLGAVGELPPSLRGDRARPGESADGVPVLELENLYDRKD 742

Query: 667  --VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE----NNIPTIASRWLQRL- 719
                        A + + +    F +A      +   S          P   S +L  L 
Sbjct: 743  LEEAVKAHKSALAARRLDEDRRLFYVALTRTERVLFASGHHWAESGTEPKGPSEFLTELR 802

Query: 720  --------------------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
                                      +   +  K      D         ++        
Sbjct: 803  DTVTGEEHEGIGVVDLWAPAPEPEEQNPLTSTPKSAVWPRDPLGLRREAVERGAALVVAA 862

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH------------FKKDPDRTD 807
                  Q       + +    D  A+ A R  + +                 + + D   
Sbjct: 863  LRNAGKQSPAGEDEDPENWAADVDALLAEREARANARAEVVLPGQLSVSQLVELEADPDA 922

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---HLFHKIS 864
                    +         + T     + ++   +     +  P               + 
Sbjct: 923  LAARLRRPLPFPPNPLARRGTAFHAWVERRFGATRLLDLDELPGAADTGAGPDADLATLQ 982

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924
             +FL      ++      V +P + ++      L G  D +     G   + D+KTG  P
Sbjct: 983  DAFLRSPWADRN---PTEVEVPFETSVAGT--VLRGRIDAVFTDPDGGWTVIDWKTGAEP 1037

Query: 925  KKETAQKLIDPQLSLEAAA 943
                 +K +  QL+    A
Sbjct: 1038 SAAN-EKAVVMQLAAYRLA 1055


>gi|311108182|ref|YP_003981035.1| hypothetical protein AXYL_05013 [Achromobacter xylosoxidans A8]
 gi|310762871|gb|ADP18320.1| hypothetical protein AXYL_05013 [Achromobacter xylosoxidans A8]
          Length = 887

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 65/555 (11%), Positives = 161/555 (29%), Gaps = 41/555 (7%)

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
              R   +  +      +        +    L+  +                     +   
Sbjct: 336  DVRDRARLASIDARWRRQAQLHVSPQDWRKLLADLPLLAQAWNQAMEIWTQGGRQATCDV 395

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
            W       L  +       L ++ ++  G    +L S      +  +   +  ++++  +
Sbjct: 396  WMLRMKAALMALGFPGEGVLDSVGYQVMGALGDALGSFSALAPAAGRLGGVAAVNLLESV 455

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                + +P+ +  + L +LG LE+    +D + + GL + V P +   NP L   +    
Sbjct: 456  ARSASFQPQRDPLARLDVLGLLEAEGGYWDGVWMLGLTDDVLPASPKPNPLLPLAVLRQA 515

Query: 673  NLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
                 T E+    A   +         +I + +  +       S  +         +  D
Sbjct: 516  KAPRATPEREREWAEGMYAALCRCAPEIIVSHAHMDGERELRPSPLI------AAAELTD 569

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                  Q      ++     + P                      +     +P   + R 
Sbjct: 570  WAPAATQALSALPQESLDDAQGPPLA--------AGNRGGGGLDVLDTQARNPLWAFVRH 621

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-------EINHLMKQIIDSH 842
             L    +  +        RG   H  +  +     +++          +  L++Q +   
Sbjct: 622  RLGGREMAPYADAATVNVRGQFLHKALELVWGMMPDQDALHEVMATGRLPALLEQAVAQA 681

Query: 843  FEKE--NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
             ++E  +  P +  +       +  S+L+ E +         V    +    ++ + L  
Sbjct: 682  ADEELKDYAPALKTLECQRAQAVLTSWLDMEAQRLP-FAVAQVEKNHQWQRGALNLKL-- 738

Query: 901  FADRIDLLKSGFVDITDYKTG----DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
              DRID L  G   I DYKTG          +  + ++ QL   A+ L   +  ++    
Sbjct: 739  RLDRIDTLGDGRNVIVDYKTGVAAAKPEPDWSRSRPVNVQLPFYASVLADAAGGEVAGLV 798

Query: 957  VANLFYIRLKQKFKIDCITNDKKKYSADE-------LSEKSLKNLIEIVTLLQNG-EQPF 1008
            +A +   ++  +   D          A +          +  +     +  L +   + +
Sbjct: 799  LAQIHARQVAAQGLADEDLGVPGVTLASDSKYFDGLSWPEIRQRWRTAIEALADEYAEGY 858

Query: 1009 ISHLRLSEKSNIQSE 1023
             +++          +
Sbjct: 859  AANVAYRRDDLKYCD 873



 Score = 40.3 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 90/894 (10%), Positives = 211/894 (23%), Gaps = 108/894 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIE--ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
           A   +     R  + L  E        ++ + LP I  L   + +        + +  P 
Sbjct: 22  ADTLVLTVNNRLSRRLTLELAGLLRQERQVSELPRILPLSAWLADAANELAFETDDDVPA 81

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             + +    L     I                E    + +  + A  L+ +   ++D  +
Sbjct: 82  YRLDSFATQLVWTEAIR--------------AEEAERVLLDASQAARLSMDADLLMDEWQ 127

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
            +     D       +    W             + + L  ++A         ++RA  +
Sbjct: 128 LQVPSGADT---DEYRGFAKWRA----------RYRQALAGIDAEDANQGYARVLRALED 174

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    +++AG T   P   RL+S                     A      ++   
Sbjct: 175 G-RLPIPQQLVLAGFTDISPRFRRLLSAFEEQGAAVAQWRDAQRVETAARRYEAADQGAE 233

Query: 281 ITSSNTTYS----THPQYSLAKLLDFLDI-KREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
             ++    +     HP    A +   L+       + L        G +       +   
Sbjct: 234 WRAAAAWAAEHLKAHPHGRYAIVSPQLEAESPFARRVLSQALAGRGGEAAYAFNVAVGRP 293

Query: 336 TSDMRNTDILENKIPNIQKCFSD----VALIEAD-----------NEREEAISIAIALRM 380
            ++          +  + +C       V ++ A            +    A   A   R 
Sbjct: 294 LNEWPMARAALAWLRALAECAPGKGCSVEVLGAALLGGHCAGDVRDRARLASIDARWRRQ 353

Query: 381 S--LDENKKKSALITADRNLARRVKLELTRFGINIDISA------------------GIP 420
           +      +    L+     LA+     +  +      +                   G  
Sbjct: 354 AQLHVSPQDWRKLLADLPLLAQAWNQAMEIWTQGGRQATCDVWMLRMKAALMALGFPGEG 413

Query: 421 LSTTLHSSILTSLLNAI---------FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
           +  ++   ++ +L +A+               +A   L++       F  +    A+  +
Sbjct: 414 VLDSVGYQVMGALGDALGSFSALAPAAGRLGGVAAVNLLESVARSASFQPQRDPLARLDV 473

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
             +          +  L        A+ K N  +P    R ++  +       +      
Sbjct: 474 LGLLEAEGGYWDGVWMLGLTDDVLPASPKPNPLLPLAVLRQAKAPRATPEREREWAEGMY 533

Query: 532 TPLVTYKTN----KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
             L               G   +     +    L +      + L  L  E         
Sbjct: 534 AALCRCAPEIIVSHAHMDGERELRPSPLIAAAELTDWAPAATQALSALPQESLDDAQGPP 593

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
            +     G  +     +  + +   +       ++   +    +      L     L+ G
Sbjct: 594 LAAGNRGGGGLDVLDTQARNPLWAFVRHRLGGREMAPYADAATVNVRGQFLHKALELVWG 653

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
            + +            L  +++  +     E+    A     +       + T  L    
Sbjct: 654 MMPDQDALHEVMATGRLPALLEQAVAQAADEELKDYAPALKTLECQRAQAVLTSWLDMEA 713

Query: 708 I--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
              P   ++  +      G         R     D    +          +P+P      
Sbjct: 714 QRLPFAVAQVEKNHQWQRGALNLKLRLDRIDTLGDGRNVIVDYKTGVAAAKPEPDWSRS- 772

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
                      + +N     YA                     G +   I    +  +  
Sbjct: 773 -----------RPVNVQLPFYAS---------VLADAAGGEVAGLVLAQIHARQVAAQGL 812

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
            +       +    DS +      P I   WR     ++  + E      +   
Sbjct: 813 ADEDLGVPGVTLASDSKYFDGLSWPEIRQRWRTAIEALADEYAEGYAANVAYRR 866


>gi|148989179|ref|ZP_01820569.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP6-BS73]
 gi|147925402|gb|EDK76480.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP6-BS73]
          Length = 1091

 Score =  151 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 120/932 (12%), Positives = 255/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     GA ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGAEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQIFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIVPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748
                 +  +G                + + ++                       LD  
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715

Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             +       P                 Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|15128574|dbj|BAB62753.1| putative ATP-dependent exonuclease subunit B [Streptococcus criceti]
          Length = 1115

 Score =  151 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 135/1004 (13%), Positives = 281/1004 (27%), Gaps = 183/1004 (18%)

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            + E  L +  S    I   + L D+   ++       DL  L ++       L    L  
Sbjct: 97   FEEGDLKIYGSLRKDINFIQQLVDLYKELQRSNLTIFDLDELASD-------LKYQDLTA 149

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGSTGSIPATARLMSTV 249
                + + L E N  +       L    +  L +  K   +I+ G +        L+S +
Sbjct: 150  IFSAFYQVLEEENFEAQTKIAQFLEHVSSGELDQVLKNLVVIVDGFSRFSAEEEALVSAL 209

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 G  ++ G                      S+       Q ++  LLD        
Sbjct: 210  HE--KGVDIIIGTYASQKAY-------------KSSFLGGNLYQANVEFLLDLGQKFGLQ 254

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
             + +G+ S +          + L        +  +   ++ +  K    + + +  +++E
Sbjct: 255  AEYIGHSSGDN--------LAHLSDYLEARHDFSVDLPRLTDQDK--QALTIWDVVSQKE 304

Query: 370  EAISIAIALRMSLDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426
            E   +A  +R  L++    K   ++  D    +        ++ I        P+S    
Sbjct: 305  EVEQVAREIRHLLNDGVRYKDILVLLGDPESYQLQIGKIFKKYDIPFYFGKAEPMSHHPL 364

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
            ++ + SL            +  L+K  L K               ++          DI 
Sbjct: 365  ANFIESLERIKRYNFRAEDVLNLLKSGLFKDFKD----------TDIDKFDQYLKYADIK 414

Query: 487  DLKSL--VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                          Q  +           +   +   +L++ +   +    +      + 
Sbjct: 415  GQAQFKKAFTANVQQGFDDDGQALYKYDLDALNQTRRVLLEPL---LELFSSRALLGENL 471

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                 +     + +            +      EE  KTL+ L +++       K    +
Sbjct: 472  LNKKFLPFLQAIDLPANMAKLAHGKSEQELEKEEEVWKTLTDLLAEMAAIFGQEKLKIDD 531

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            ++ ++   +   + +        + +             +   GL  G +P+    +  +
Sbjct: 532  FLALLQAGMQASSYRTVPATLDVVTVKDYELIEPHTSPYVFALGLTAGNFPRIHKNSSLI 591

Query: 665  SRVMQSDLN--LKTAEKY------------IGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
            +   +  LN  L  +E+                +A    + + T+ L+ +     N    
Sbjct: 592  TDEDRLALNDRLAASERQGHFDLPNQENIKKNHSAMISLLNSATQKLVLSAPQIFNENED 651

Query: 711  IASRWLQRLLVLGGTDFFDNL--------------------------------KKRGQCY 738
              S +LQ LL +G      +                                 K +   +
Sbjct: 652  KFSPYLQDLLDMGVPLISKSAVSFEEDTDLGTYKALLSRVIEANQLSQTEDLSKDQATFW 711

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPP---------------LEAQPRTYSFSEIKQLINDPY 783
                R+L     Q     P                       QP   S S +    N+ Y
Sbjct: 712  SVMVRRLRQKLAQQDIAIPTITDDLTVEPISQEVLDILYPSDQPLRLSASSLTTFYNNQY 771

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
            A +   +L+L+        PD    G   H I   ++ +   + + + + L+ Q+I+   
Sbjct: 772  AYFLNHVLRLEEEESIH--PDFRHHGVYLHKIFERVMAQ--TEGSEDFDALLNQVINQVS 827

Query: 844  EKENLP-----PHIDIIWRHLFHKISHSFL-------------EHEEKI---QSSIEKI- 881
            ++E             + + +   I+HS                 E +        +K  
Sbjct: 828  QEETYRILYETDQEGRLTQDILLDIAHSTAPILRDNSAVQVLGRAEAQHYLGDKDWQKTP 887

Query: 882  ----FVNIPAKMAIES----IGIHLTGFADRIDLL-KSGFVDITDYKTG-DNPKKETAQK 931
                 + +     +        + + G  DR+D L  S  + I DYK+G           
Sbjct: 888  QALKALEVNFNYQLPITAHQRQLEIRGQIDRLDQLSSSDSLGIVDYKSGDKKFNLADFYN 947

Query: 932  LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
             + PQL     ALK    S      +    Y+ +      D     K   + D+      
Sbjct: 948  GLTPQLLTYILALKEQMPSDYQA-PIFGATYLHM-----QDPEIRFKDLKNLDD------ 995

Query: 992  KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD-----HLARV 1030
                              +   L++    Q  YD     HLAR 
Sbjct: 996  ------------------AAGVLAKTFKYQGLYDAQQASHLARY 1021


>gi|212551066|ref|YP_002309383.1| hypothetical protein CFPG_709 [Candidatus Azobacteroides
            pseudotrichonymphae genomovar. CFP2]
 gi|212549304|dbj|BAG83972.1| conserved hypothetical protein [Candidatus Azobacteroides
            pseudotrichonymphae genomovar. CFP2]
          Length = 946

 Score =  151 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 148/438 (33%), Gaps = 39/438 (8%)

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            +  ++ + +    V         L I+G LE+R L+F+ LI+  +NEG  P +  +N F+
Sbjct: 493  FSWLLRKYLSETKVPFNGNPVKGLQIMGVLETRTLDFNNLIIFNVNEGYMPGHRNENTFI 552

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRL--- 719
             + ++    + T E      A+ F       +++    +  E        SR+L +L   
Sbjct: 553  PQFLRKHFRMYTVEHQDSIYAYYFYRLITRAQNITLVYTTNETQIGKAEMSRFLLQLLVD 612

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
              L        L+            +D         + K       Q ++ S + +   I
Sbjct: 613  PRLKDNIERFTLQASVIPMHSRHITIDKDKSLLEKIKNKYDLNTNIQAKSLSPTILSCFI 672

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------EI 831
            + PY  Y   I +L        + D +  G++FH     L ++   +           + 
Sbjct: 673  SCPYHFYLEYIQELRNKTELSSETDNSIFGSIFHQAAKLLYQQIGTRQIDSKTLDMYTQS 732

Query: 832  NHLMKQIIDSHFE--------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
               ++ I    F+        KE       +I  H+  K+    +  ++K       + +
Sbjct: 733  PQYIRNIALEAFQREFFKRQVKEKDYNGKQLINLHVICKMLDRLVRFDQKHTP-FSILEL 791

Query: 884  NIPAKMAIES----IGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLID---- 934
              P   +       I I++ G  DR+   K G   I DYKTG      +   +L+     
Sbjct: 792  EFPINGSFPIKKGNIHINIGGVIDRL-QEKDGKHIIIDYKTGHEKNSFKNLSELLSTKHK 850

Query: 935  --PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT--NDKKKYSADELSEKS 990
               Q  + A               V    YI+   K K   I   N+    + ++     
Sbjct: 851  HIFQAFIYATLYSQKE-KNKPIVPVP--LYIQRIHKKKYSPILIYNNTPVDNFNKFEIDF 907

Query: 991  LKNLIEIVTLLQNGEQPF 1008
               L + +  L +   PF
Sbjct: 908  KNLLFKKIEELFDPNIPF 925



 Score = 66.5 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/285 (10%), Positives = 66/285 (23%), Gaps = 68/285 (23%)

Query: 15  SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
           +PF   +   L++    +           L+ + +  P  RA   L +   +        
Sbjct: 7   TPFLYLVAENLISRFGTD-----------LSDIVVVFPGMRAKLFLNNYLHQYVKV-PLW 54

Query: 75  LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
            P  +++  +  E     +                L ++ L  I+        K  +   
Sbjct: 55  SPQYQTIESLFTESSPLQIGDDI------------LLISELYKIYNQIHNKHFKKPFK-- 100

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEK---Y 177
                 +     +  + L +  D I+                    ++L  L   +    
Sbjct: 101 -----KTLDEFFFFGETLLNDFDEIDKNNIDAKLLFGNLQDLSTLRDNLSHLSENQIQAL 155

Query: 178 GMW--------------WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                            +    + L      +  RL E N S P      ++        
Sbjct: 156 IHHFKHIFQNKTPLQNNFRNIWNMLGEVYTSFKTRLKEKNISYPGMLMRQVVENTENLFK 215

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
           +         G         +L   +      +      D +   
Sbjct: 216 EM---HYAFVGFNALNKCEEQLFELL---KEKSSFYWDYDKYYLE 254


>gi|148272376|ref|YP_001221937.1| putative ATP-dependent DNA helicase/nuclease [Clavibacter
            michiganensis subsp. michiganensis NCPPB 382]
 gi|147830306|emb|CAN01240.1| putative ATP-dependant DNA helicase/nuclease [Clavibacter
            michiganensis subsp. michiganensis NCPPB 382]
          Length = 1089

 Score =  151 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 123/1058 (11%), Positives = 248/1058 (23%), Gaps = 97/1058 (9%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
            L   + E      L+P   A V +  P++ A   LR E     G   T+ P+ ++   V 
Sbjct: 53   LRELVAERILAQGLDP---AEVLVLAPSRAAATRLRDELALRVGV-PTLGPLARTATSVA 108

Query: 86   EEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
             E        +    P + +  ++   +A L+               P  P  L +    
Sbjct: 109  FEVLARRAAETGTEPPRLLTGAEQDQIIADLLAGHEEL------GTGPAWPDPLGVEVRR 162

Query: 145  AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                   L +++     E  + + L  L        W+ AA F +             + 
Sbjct: 163  LRAFRTELRELLMRATEEGVRPDALAELGRAHDVPEWIAAAAFAREYEDVVDSF--RGDH 220

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                      +   +          ++      +  AT  L+  +A    GA V+   D 
Sbjct: 221  LDSAELLAEAVLLVSRGEALTGIRLVVADDLHEATVATLSLLRALA--ARGADVVAFGDP 278

Query: 265  HIPTAIWNTITEKSTNITSSNTTYST---------HPQYSLAKLLDFLDIKR-------- 307
             +  A +      +    S+               H Q    + L      R        
Sbjct: 279  DVAAATFRGAEASALGRLSTVLGLPGLRTLVLDRVHRQPPALRALTSAVTARIGAAGAGR 338

Query: 308  ---------------------EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                                    + L         R   +           +  +  L 
Sbjct: 339  QRQAGSAPGLDDDADPIQIIEAPTRALELARLARRLREEHLLGGVPWARMVVLVRSGSLV 398

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD------ENKKKSALITADRNLAR 400
             ++            +            A+AL  ++D            A   A   L  
Sbjct: 399  PQVARSLATAEVPTRMAVAGRALRDDLAALALIRAVDVVLGRVPLTPDIAAELATGPLGG 458

Query: 401  RVKLELTRFGINIDIS----AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
               + L R  + +        G   S  L    L +                 +   L  
Sbjct: 459  LDGVALRRLRLAMRQEELAGDGHRSSDELLVEALAAPGRLETLDLAPARRLGRLARTLQG 518

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV----PHWQSRL 512
                       +  L  +                  +      ++   V       +  +
Sbjct: 519  ARELASADGTIEELLWHLWEGSKLAKPWFEQALQTGIVADQANRDLDGVVALFTAARRFV 578

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
                   A   V+ +L    P  T      +    ++           +  V   +    
Sbjct: 579  ERSPGRPASDFVEELLGAEVPEDTLSPQPLADTVLVATPSAVVGAGYEVVAVAALQEGVW 638

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
            PNL       +L              +A+  E  +++   +    +         +    
Sbjct: 639  PNLRLR---GSLLHPQRLSAVARGLDRADVDERAEVLGDELRMLALAVSRASRVVVLSAT 695

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA---AHDFE 689
              +    +    ++         +   ++  +++   + L ++       +    A   E
Sbjct: 696  ANDEEAPSPFLRLVPPAPGIAEAEAGVESGRVAKDAPAALRIRPDHPLSLRGLVGALRRE 755

Query: 690  MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
            +A   R  +     R  +    A R        G        +   +          Y  
Sbjct: 756  LAVVHRDAVLLDDGRVVSGDRTARRAADATRERGRAAASALARLAAEGVTGADPAEWYGL 815

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
            ++P    P             S S ++     P   +  +                   G
Sbjct: 816  REPSTTEPVVDLTDPEARVPVSPSRLEAFERSPLNWFIDQASGGS-------TSTAMGIG 868

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHSFL 868
            T+ H ++ E          P                E+         +          +L
Sbjct: 869  TIVHAVMEEASLDPEADLRPAALEERLDERWGELPFESPWVGERERRQAGELIAGVSGYL 928

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKKE 927
               E        +      ++ +      L G  DRI+L + G V I D KTG + P + 
Sbjct: 929  RDFEAR--GGRMLAAEGGFELEVGVA--RLRGKIDRIELTEEGQVVIVDLKTGRHFPTRA 984

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN---LFYIRLKQKFKIDCITNDKKKYSAD 984
                    QL     A   GS  Q+     +    L Y+    +           +   +
Sbjct: 985  EIPAHA--QLGSYQLAYVEGSLEQVPAGTPSGGAKLLYVSGGTRGLPYR------ELPQE 1036

Query: 985  ELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022
             L+ + L      +     G      +           
Sbjct: 1037 PLTREELDGFRARIAEAATGMAGATFNGTPDLGERDPG 1074


>gi|327389309|gb|EGE87654.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae GA04375]
          Length = 1091

 Score =  151 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDIDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDSFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVGQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRG----------------------------QCYLDWTRKLDY--------- 747
                 +  +G                            +  L + + L           
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDIERDLTFVKVLSRVIGKKLDLQ 715

Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                      + +   K          Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|221231864|ref|YP_002511016.1| ATP-dependent exonuclease subunit B [Streptococcus pneumoniae ATCC
           700669]
 gi|251764624|sp|B8ZQ31|ADDB_STRPJ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|220674324|emb|CAR68870.1| putative ATP-dependent exonuclease subunit B [Streptococcus
           pneumoniae ATCC 700669]
          Length = 1091

 Score =  151 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 251/932 (26%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQIFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747
                 +  +G                  Y       D                      
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715

Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                      + +   K          Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGKQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|298230418|ref|ZP_06964099.1| ATP-dependent helicase/deoxyribonuclease subunit B [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255441|ref|ZP_06979027.1| ATP-dependent helicase/deoxyribonuclease subunit B [Streptococcus
           pneumoniae str. Canada MDR_19A]
          Length = 1091

 Score =  151 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDIDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDSFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRG----------------------------QCYLDWTRKLDY--------- 747
                 +  +G                            +  L + + L           
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDIERDLTFVKVLSRVIGKKLDLQ 715

Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                      + +   K          Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|168486451|ref|ZP_02710959.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570499|gb|EDT91027.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae
           CDC1087-00]
          Length = 1091

 Score =  151 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 120/932 (12%), Positives = 253/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752
                 +  +G    D                                 +R +     Q 
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715

Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             + P                       Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|168483211|ref|ZP_02708163.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae
           CDC1873-00]
 gi|172043451|gb|EDT51497.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae
           CDC1873-00]
          Length = 1091

 Score =  151 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 120/932 (12%), Positives = 252/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     GA ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGAEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YIDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERKNLNQT 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747
                 +  +G                  Y       D                      
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715

Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                      + +   K          Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|306835514|ref|ZP_07468528.1| probable helicase [Corynebacterium accolens ATCC 49726]
 gi|304568571|gb|EFM44122.1| probable helicase [Corynebacterium accolens ATCC 49726]
          Length = 1035

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 119/1048 (11%), Positives = 266/1048 (25%), Gaps = 166/1048 (15%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
              ++  +    +P   + + +   +K +   LR E  E     +    +++S+  +    
Sbjct: 53   HALDRAQETGADP---SGILVVAASKESGARLRRELSERLEDYAAQSSMVRSIHSLAFAL 109

Query: 89   FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
              +                RL+  A    + R  L D  +  + + P  +       +  
Sbjct: 110  LRSASDEEL----------RLITGAEQDAVIRELLEDHAESGHGDWPEEV-RPALEYVGF 158

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
            A+ L D +           DL +L  +     W  A  FL+   +    + +    S   
Sbjct: 159  ARQLRDFLLRSIERGLSPADLESLGAKYGRGMWSAAGTFLREYERV---QALSGAHSYSA 215

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
               +  +    E         I++  +    P   +L+S +A+     ++  G D     
Sbjct: 216  AELVNQVLLRPELTSSHPWHTIVVDDAQLLDPTAGKLISRLASDAQLLVI--GGDADQSV 273

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +     +      +  +               L               +  GR   + 
Sbjct: 274  FAFRGANSQFLEEFPAENSVE-------------LSQPHRSGSPACVSIVDSEGRLRDVV 320

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
               +     D                                   IA+ +R + D     
Sbjct: 321  ADTVRRRHLDDGVQWRD----------------------------IAVIVRSTAD----- 347

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
                     + +  +  L            + L+     S +   L A+ +      +  
Sbjct: 348  ---------IGQMRRTLLAAGVPVHISPTDVILAEQRLVSAMLLALRALEEDLSNAELEE 398

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            L+  P+                      RG                    +  +  +P +
Sbjct: 399  LLTGPVGGADPVTLRRLIRGLRRWAPDTRG---------------MDSLRELLHGELPDF 443

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
              +L+E +  +   +   +      +    + +       S ++      T         
Sbjct: 444  NGQLTEREFSILERVRAVLAAGRQAIQAQASVEEILWEVWSATELDMRLQTSALRGGATG 503

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
             +   +L         +  +S+     S           I  + +       +      +
Sbjct: 504  SQADRDLDAMMALFDAAGDYSERRPGSSLQSF----LTHITEQELPTGVRDRRTAIPQAV 559

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679
             I+    +    +DT+I+ G  EG WP          +    DL  +  E          
Sbjct: 560  EIITAHGAVGREWDTVIVAGAQEGAWPSLGETGSIFGQEDLIDLLDRDIEPDTPVSHIAS 619

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIP---TIASRWLQRLLVLGGTDFFDNLKKRGQ 736
             + +    F +A          +  EN         SR++      G        ++   
Sbjct: 620  RLAEERRLFHVATTRHRNRLLIAAVENPNEDAFAEPSRFIAEFTGRGVDVPGTMARREAS 679

Query: 737  CYLDWTR-----------------------------KLDYTTKQPHYKRPKPFPPLEAQP 767
              L  T+                              L   +     +R    P      
Sbjct: 680  RALRATQFPRELGLDVPEPAPVSLRDGLEVDPLDISVLSVPSFVAQLRRVVANPESGEAE 739

Query: 768  RTYSFSEIKQLI------NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
            R  +  ++ +L         P   ++ R +         K    +    L +  +  ++ 
Sbjct: 740  RRQAARQLARLAQAGIPGAHPDQWFSARSVASHTQLRGSKSLSPSRVEALLNCPLKAIVG 799

Query: 822  KRINKNTPE--------INHLMKQIIDSHFEKENLPPHIDIIW-------------RHLF 860
                  +           +  ++ I      ++     ++                   F
Sbjct: 800  NLAEDPSGAEHLLRGTMAHAFLEAIGRGMDAEKARLLVMEAYEFILDVPQWQLQSKLEEF 859

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
             ++     +  ++ +   E   V +P  + +    I + GF DR+     G   + D KT
Sbjct: 860  SRLLERTQQWAQQSEVKNELAGVEVPVYVEVAP-DIRVGGFMDRLMQDGDGNYLVVDLKT 918

Query: 921  GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN---LFYIRLKQKFKIDCITND 977
            G +     A+   + QL     AL  GSF     R          + +        IT  
Sbjct: 919  GKS-AATQAEAEENRQLMTYQLALSRGSFDGQRVRDGEGMPRAGGVLVYPGKDSSKITTR 977

Query: 978  KKKYSADELSEKSLKNLIEIVTLLQNGE 1005
             +     E  E+    L  +   L+  +
Sbjct: 978  TQSQLTAEALEEFSTLLPPLAAELRGPQ 1005


>gi|332075465|gb|EGI85934.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae GA41301]
          Length = 1091

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 121/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     GA ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGAEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQIFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIVPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752
                 +  +G    D                                 +R +     Q 
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLIAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715

Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             + P                       Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLGAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|332201619|gb|EGJ15689.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae GA47368]
          Length = 1091

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 251/932 (26%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747
                 +  +G                  Y       D                      
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715

Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                      + +   K          Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|310657538|ref|YP_003935259.1| ATP-dependent deoxyribonuclease (subunit b) [Clostridium
           sticklandii DSM 519]
 gi|308824316|emb|CBH20354.1| ATP-dependent deoxyribonuclease (subunit B) [Clostridium
           sticklandii]
          Length = 1118

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 130/1018 (12%), Positives = 276/1018 (27%), Gaps = 153/1018 (15%)

Query: 63  EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
             ++    K  I   + S   +     +    L     P +  I + + L  +     + 
Sbjct: 46  ALMDKVDSKGLIYAQVMSFERLSRLVLSRVGGLKR---PYIDEIGKHMALRLIFDKHEDS 102

Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
           LP        E  LS              L+  +  ++        L  L          
Sbjct: 103 LPMYKTAYKKEGFLS-------------ELSHTLSELKKMAVPPSLL--LDKSNQIENNA 147

Query: 183 LA-ADFLKI--ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
           L      +I      +   + +    +    +I+L+  +     + +         TG  
Sbjct: 148 LLKQKLFEIGFIYNEFLNYMQDQYIDN--EDRISLLAEKINLYKEISNASFYFDSFTGFT 205

Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
                ++  +A            D                       + ++     L  +
Sbjct: 206 ALELSVIEQLAQMGTSLCFALTYDETSAD--------------KDVFSPTSLTINQLKAI 251

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
                 + E    +   +     R +  +                 + K P+ ++   DV
Sbjct: 252 AKATGSEFEIEALVNESTKSKEIRYIEKALY---------------DYKAPSYKEKIKDV 296

Query: 360 ALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDI 415
            L EA +  +EA   A+ +   + +     K   +IT   +L    +    TR  I   I
Sbjct: 297 KLFEALDMEKEAEHCALEVLSLVRDFGYRFKDILIITPMPHLYAGPISRVFTRLEIPHFI 356

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                + ++   +++ S L+   K   +  + + +K    +    +            + 
Sbjct: 357 DVKRDIMSSPLITLIFSYLDMHIKNLRYEDVFSFLKSGFTQLDESQYMPLENFVLKWGIK 416

Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            R   +     + +            + +         +  K+  V L +   +      
Sbjct: 417 GRMWLDENRFSEERFF----------DQYDSSEYKEKIKTAKDYLVSLFELNKKSFKGSG 466

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           T  +   +  G L+           +  +  +E+         +    +     +++E  
Sbjct: 467 TGPSYAKALFGFLTEIKAQDQLEIFVNRL-REENAFDYANENAQIWNIILDTLDQLVEIM 525

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                +  E+ +I+   I    +         + +     SR      L   GLN+   P
Sbjct: 526 GEKPMSLEEFRNILYEGIKQHEIGIIPPALDQVIVATLDRSRSTAIKALFFMGLNDTYVP 585

Query: 656 KNTAKNPFLSRVMQSD-----LNLKTA-EKYIGQAAHDFEMANGTR--HLIYTRSLR--E 705
                +P L    +       +NL +  +  +         A       L  + SL   E
Sbjct: 586 HVGKDSPILLDDDKKKLKDLGVNLPSELDNAMSDETLSIYSALSKPNDKLFLSYSLSGGE 645

Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL----------DWTRKLDYTTK----- 750
           +N     S  + RL  L       +       +               +L    +     
Sbjct: 646 DNKALRPSTIINRLKTLFPNLHERSSLSDTSVFSYISTPDYSFGKLAGELRDLVEEKHLD 705

Query: 751 -------------------------------QPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                                          Q  Y  P     +   P   S S +++  
Sbjct: 706 KDWLSLYSWYIDNDGWEARRQRLLDNLFYKNQQEYITPTQAKQIYEAPFKASVSRLERFA 765

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-----------T 828
             P+  + +  LK +     +  P   + GT+FH+ I +  K   NK             
Sbjct: 766 KCPFDHFVQYGLKPEPRKVHEIGPP--ELGTIFHSAIEDFAKLANNKASLPLLLDKKTCD 823

Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIP 886
            +I+ L++  +  H +        +        K+     +    +  +   E     + 
Sbjct: 824 EQIDKLIENCVSDHIKILMDNSKRNAYMMKKIKKVGRRAAWTMVNQMSKGRFEPYDFEMK 883

Query: 887 A-KMAIESIG---IHLTGFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDPQLS 938
              + ++      I LTG  DR+D+L       V I DYK+         A   +D QL 
Sbjct: 884 LPPIVLDLGEYGTIELTGQIDRVDILDENEKTYVKIIDYKSREKKFSLSDAYNGLDIQLI 943

Query: 939 LEAA-ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
           +     L+     +      A  FY      F I     +      +E+ ++    L 
Sbjct: 944 VYLESVLEHLPSLKKTKAYPAGAFY------FPIVDKLIESDLTDVEEIEKQIAGKLK 995


>gi|145225243|ref|YP_001135921.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
 gi|145217729|gb|ABP47133.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
          Length = 1091

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 109/1093 (9%), Positives = 267/1093 (24%), Gaps = 135/1093 (12%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57
             ++  V    P          A    T+     +   N       V     T++A     
Sbjct: 22   EEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYATPGEVLGLTFTRKAAGQLL 81

Query: 58   QELRSEFIEITGKKSTILPII------KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE 111
            + +RS    + G   TI P          +       F   LL  + L  PV    RLL 
Sbjct: 82   RRVRSRLARLAGAGLTI-PAAGADLADDPVTIGTYHAFAGTLLREFGLMLPVEPDTRLLG 140

Query: 112  LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171
               L  +    + +    L  ++  S     A  + LA  L++ +   E       +L  
Sbjct: 141  ETELWQLAFRVVCEHPAAL--DTDKSPASITAMVLRLAGQLSEHLVDTEQLRDTHVELDR 198

Query: 172  LKNEKYGMWWLL-------AADFLK---------IASKYWTERLVELNASSPVGYQIALM 215
            L +      +             L                  R+ E           +  
Sbjct: 199  LVHTLPAGRYQRDRGPSQWLLRMLATQTERTMLVPLIDALHRRMREERVMDFGMQMASAA 258

Query: 216  RAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPT 268
            R  + H       +     +++     +  A    +S++      +G  +    D     
Sbjct: 259  RLASTHPAVGEQLRQRYRVVLLDEYQDTGHAQRVALSSLFGGGADDGLALTAVGDPIQSI 318

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              W   +  +    +++   S        +L        E +      S +   RS+ + 
Sbjct: 319  YGWRGASATNLPRFTTDFPLSDGTPAPTLELRTSWRNPPEVLHLANAASVDARRRSVEVR 378

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK- 387
                 P+         L + +   +                 A  +A      L  +   
Sbjct: 379  SLQPRPNAEPGSVRAALLSDVEAERDWV--------------ADQVAHRWHGGLAASGTA 424

Query: 388  -KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              +A++      A  +   L+R G+ +++     L      + + ++L          A 
Sbjct: 425  PTAAVLVRRNADAAPMADALSRRGVPVEVVGLAGLLAVPEVADVVAMLRVAVDPTAGAAA 484

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              ++  P  + G  +      +    +              + +        + +     
Sbjct: 485  VRVLTGPRWRLGARDLTALWRRAVTLVD-----TGPSASDAVSATAEIVAKLEPDADDAC 539

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
               +                 +  +   +T      S+     +++  +      +    
Sbjct: 540  LADAVCDPGPAAAYSPTGYARIVALGRELTALRAHLSSPLPDLVAEIRRTLGIDAEVRAA 599

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                        E       + ++    G+   +  + ++D   ++ +G         S 
Sbjct: 600  --QPISAGWSGTEHLDRFGDVVAEFASRGTPTASGLLAYLDTAEQVENGLAPAEVTVSSD 657

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL------------ 674
             + IL    ++ L +  + +  L   V+P   +   +L+        L            
Sbjct: 658  RVQILTVHAAKGLEWQIVAVPHLVGRVFPSTASPRTWLTDAADLPPLLRGDCATVSAHGV 717

Query: 675  ------------------------KTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENN 707
                                        +   +    +       H +           +
Sbjct: 718  PVLDTSDVSDRKGLSDKIAAHKSSLDQRRTDEERRLLYVAITRAEHTLLVSGHHWGATES 777

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
             P   S +L  +  +      +                  T           +P      
Sbjct: 778  KPRGPSTFLTEIKDVIDASIEEGRPCGSIAVWADAPADGETNPIRDRVVEAVWPVDPVAG 837

Query: 768  RTYSFSEIKQLIN------DPYAVYARRILKLDFIPHF--KKDPDRTDRGTLFHNIITEL 819
            R         L+        P          +  +     ++D             ++  
Sbjct: 838  RRGPVDRGAHLVAEALSGECPEVGSDDDHGWVADVDALLAERDLAAQRAVPSLPAQLSVS 897

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI--------SHSFLEHE 871
                + ++   + H +++ +    +   L       W   + +             ++ +
Sbjct: 898  AMVELGRDPEAVAHRLQRRLPRRPDSHALLGTAFHEWVQRYFQAEKLFDLDDLPGAVDAD 957

Query: 872  EKIQ---------------SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
             + +               ++   I V +P  M +      + G  D I     G   + 
Sbjct: 958  RQDRGELDELQTAFAVSPWAARTPIDVEVPFDMMLAGR--IVRGRIDAIFADGDGSFTVV 1015

Query: 917  DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
            D+KTG+ P           QL++   A                  +  ++    +     
Sbjct: 1016 DWKTGEMPTDPEVLAHNALQLAVYRLAWAR---LHGCPTSAVRAAFHYVRSGRTVMPDAL 1072

Query: 977  DKKKYSADELSEK 989
             ++      L+++
Sbjct: 1073 PEEDDLIALLADR 1085


>gi|225854626|ref|YP_002736138.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae JJA]
 gi|225856771|ref|YP_002738282.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae P1031]
 gi|225722801|gb|ACO18654.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae JJA]
 gi|225724555|gb|ACO20407.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae P1031]
          Length = 1091

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 251/932 (26%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQIFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747
                 +  +G                  Y       D                      
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715

Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                      + +   K          Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGKQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|148998404|ref|ZP_01825846.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP11-BS70]
 gi|194397131|ref|YP_002037760.1| exonuclease RexB [Streptococcus pneumoniae G54]
 gi|251764617|sp|B5E4P4|ADDB_STRP4 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|147755801|gb|EDK62846.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP11-BS70]
 gi|194356798|gb|ACF55246.1| exonuclease RexB [Streptococcus pneumoniae G54]
          Length = 1091

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 251/932 (26%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQIFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747
                 +  +G                  Y       D                      
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715

Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                      + +   K          Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|87309170|ref|ZP_01091307.1| hypothetical protein DSM3645_05530 [Blastopirellula marina DSM 3645]
 gi|87288161|gb|EAQ80058.1| hypothetical protein DSM3645_05530 [Blastopirellula marina DSM 3645]
          Length = 942

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 104/735 (14%), Positives = 225/735 (30%), Gaps = 73/735 (9%)

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
            L+  +D+ +     L   +      S +I+         D       +            
Sbjct: 214  LIGAVDLNQTLRSMLDQATAHGAEISALIAAPEELAAAFDAHGCLRPDAWSDRRAVVDPS 273

Query: 359  -VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             V L+E   ++ E   +A     +     +   +   D  L   +K  L    ++     
Sbjct: 274  RVYLVEGPADQSE-QVVACLASFAGRYAPEDVVIGVPDEALVPELKQRLASHQLDSRFGP 332

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  +  TL   +L +  + + +   F  +A  ++HP              +   + +   
Sbjct: 333  GTAVVDTLPCRLLRTFSDYLRRR-SFATLAEALRHPDV--------WRLIEAERDPLETL 383

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                   + D          T  +        +    +     V     I + +  +   
Sbjct: 384  DLFFGEHLRDALDATELEGETIADLMAQMDRIAIPLTQPICPLVDWRQPINELLQSIYGQ 443

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
            +    ++    SI    +     L           P L                      
Sbjct: 444  RELTPASDEYRSIYLPIEAIQNALATWEEIPDTLQPLL---------------------- 481

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
               +A E IDI+ RL+  + + P+  +S  + +LG LE  L +   LIL   N+G+ P +
Sbjct: 482  ---SASEAIDILLRLLRADLI-PEEPRSGVIELLGWLELPLGDAPALILTSFNDGLTPSS 537

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL--IYTRSLRENNIPTIASRW 715
               + FL   ++  L ++   + + + A+ FE+   +R    +          P   SR 
Sbjct: 538  ANGDLFLPNSLRERLGIEDNSRRLARDAYAFELLMNSRRDLDVIVAKRTSAGDPLAPSRL 597

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR--TYSFS 773
            L            + +    +   +   +      +   +  +   P     +    + S
Sbjct: 598  LFGCDDTALPIAVERMFGAPEAINNGAVEFQSGETEQFNQAIEIPLPAPGPYQVDKITAS 657

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN- 832
            +I++ +  PY  Y  +IL+L       ++ D    G L H+ +    +  +  +  E   
Sbjct: 658  DIRRYLYCPYRYYLEKILRLRSYSDSARELDAAQFGNLAHDSLEAFGRSELRNSVDEAAI 717

Query: 833  -----HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIP 886
                   + +++   F    LP     + +         F   + +      + +     
Sbjct: 718  RDFLQQALSELVREKFGARVLPAVRIQVEQLRLR--LQWFATAQARRAGEGWKIVRTETD 775

Query: 887  AK-----MAIESIGIHLTGFADRIDLLKS-GFVDITDYKTGDNPKKETAQKL-------- 932
                   + ++ + + L G  DRID         + DYKT D  KK  A           
Sbjct: 776  NSQHEPLLVVDDVPVRLKGRIDRIDHHPDTNSWAVVDYKTSDTAKKPEADHHKGKFEERE 835

Query: 933  -IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
              + QL       +      +       + Y  L  K +       +     D   +++ 
Sbjct: 836  WFNVQLPFYRMIARE-----LGIGPHVEVGYFTLPAKRE---DVKYRAAAWEDADLDQAE 887

Query: 992  KNLIEIVTLLQNGEQ 1006
            + ++++V  ++ GE 
Sbjct: 888  EVIVDVVRQIRRGEF 902


>gi|182684116|ref|YP_001835863.1| exonuclease RexB [Streptococcus pneumoniae CGSP14]
 gi|182629450|gb|ACB90398.1| exonuclease RexB [Streptococcus pneumoniae CGSP14]
          Length = 1100

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 119 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 170

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 171 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 228

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 229 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 267

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 268 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 327

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 328 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 387

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 388 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 425

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 426 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 485

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 486 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 544

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 545 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 604

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 605 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 664

Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748
                 +  +G                + + ++                       LD  
Sbjct: 665 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 724

Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             +       P                 Q    S S + +   + Y+ + R +L L    
Sbjct: 725 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 782

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 783 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 842

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 843 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 901

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 902 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 952

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 953 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 984


>gi|303262691|ref|ZP_07348630.1| exonuclease RexB [Streptococcus pneumoniae SP14-BS292]
 gi|302636123|gb|EFL66619.1| exonuclease RexB [Streptococcus pneumoniae SP14-BS292]
          Length = 1099

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 118 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 169

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 170 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 227

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 228 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 266

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 267 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 326

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 327 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 386

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 387 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 424

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 425 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 484

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 485 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 543

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 544 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 603

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 604 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 663

Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748
                 +  +G                + + ++                       LD  
Sbjct: 664 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 723

Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             +       P                 Q    S S + +   + Y+ + R +L L    
Sbjct: 724 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 781

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 782 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 841

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 842 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 900

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 901 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 951

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 952 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 983


>gi|148995045|ref|ZP_01823988.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP9-BS68]
 gi|168488978|ref|ZP_02713177.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae SP195]
 gi|147926888|gb|EDK77937.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP9-BS68]
 gi|183572396|gb|EDT92924.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae SP195]
 gi|332073493|gb|EGI83972.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae GA17570]
          Length = 1091

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 120/932 (12%), Positives = 253/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752
                 +  +G    D                                 +R +     Q 
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715

Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             + P                       Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|148985757|ref|ZP_01818885.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP3-BS71]
 gi|147922061|gb|EDK73184.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP3-BS71]
 gi|301800091|emb|CBW32692.1| putative ATP-dependent exonuclease subunit B [Streptococcus
           pneumoniae OXC141]
          Length = 1091

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 120/932 (12%), Positives = 252/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +           S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAEKLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752
                 +  +G    D                                 +R +     Q 
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715

Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             + P                       Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|237649367|ref|ZP_04523619.1| exonuclease RexB [Streptococcus pneumoniae CCRI 1974]
 gi|237820789|ref|ZP_04596634.1| exonuclease RexB [Streptococcus pneumoniae CCRI 1974M2]
          Length = 1091

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 250/932 (26%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +           S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAEKLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747
                 +  +G                  Y       D                      
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715

Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                      + +   K          Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDAHSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGSIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|303255774|ref|ZP_07341816.1| exonuclease RexB [Streptococcus pneumoniae BS455]
 gi|302597286|gb|EFL64390.1| exonuclease RexB [Streptococcus pneumoniae BS455]
          Length = 1091

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748
                 +  +G                + + ++                       LD  
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715

Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             +       P                 Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|154174406|ref|YP_001407580.1| hypothetical protein CCV52592_0909 [Campylobacter curvus 525.92]
 gi|112803770|gb|EAU01114.1| conserved hypothetical protein [Campylobacter curvus 525.92]
          Length = 783

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/455 (15%), Positives = 143/455 (31%), Gaps = 56/455 (12%)

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +  GK + +    +       K +  +  +I    +   ++         + ++G LE
Sbjct: 379  DDKRVGKKVQNELFMLGNLARYFKFSLRQICEIFLMGLSRLSL--DDVGGGKVGVMGVLE 436

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694
            SR + FD  I+   N+ + PK +    FL+  ++    L +  +        +E    G 
Sbjct: 437  SRGMRFDGAIIVDFNDELIPKRSINEMFLNSRVREKSGLISYAQRENLQRFYYESLINGA 496

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
            + +  +    +    +IASR+L+    +    F D           +   L       + 
Sbjct: 497  KKVAISYVSND---ESIASRFLKEFSFVKDARFSDE---------AYASLLGKPGVALNL 544

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
            +  +     +   +  SFS +   ++ P   Y  +IL +         P  +  G   H 
Sbjct: 545  EPEEIVLEHDFFAQELSFSTLNLYLSCPRKYYYAKILAIPEPKTIGTAP-ASRLGEAVHK 603

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
             + E  +    +                  K  L      +   +       + ++E + 
Sbjct: 604  ALCEYYQ---GEFFRRSQRFDVTDFKKCLGKFALSS----LEFEILTVKFDIYAQYENER 656

Query: 875  QSSIEKIFVNIPAKMA-IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
                 ++ +     ++ +E  G+ + G  DR+D L  G   I DYK+G         +  
Sbjct: 657  LKEGVRV-LECEKNVSGVEFEGVKIRGVIDRVDELS-GQKMIIDYKSGK-------FEDK 707

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
              QL    A L           +    FY  L  +  +    +              L+ 
Sbjct: 708  SLQLPFYQALL----------GERCEAFYYDLGGEMTLVPSRSS-------------LEE 744

Query: 994  LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            L   +  L+N  +  I+      +      Y  L 
Sbjct: 745  LRAAIERLKNINKTRINFAPNPGQQCRYCAYKILC 779


>gi|291302043|ref|YP_003513321.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
 gi|290571263|gb|ADD44228.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
          Length = 1041

 Score =  150 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 118/986 (11%), Positives = 246/986 (24%), Gaps = 183/986 (18%)

Query: 46  SVTIYVPTKRAIQEL----RSEFIEITG----KKSTILPIIKSLGDVVEEKFTADLLLSY 97
            +     T++A  EL    R     ++G     + +  P + +         +       
Sbjct: 67  QILGLTFTRKAAAELASRIRERLARLSGLDGVGQLSGEPTVSTYHSYASGIVSEHGPRIG 126

Query: 98  NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID 157
                V +  +  +LA                      L++       + L+  L++ + 
Sbjct: 127 LEPGTVLSPAQTWQLAY-------AAVRGHDGDMSAVSLTVETVVKRVLSLSDELSEHLR 179

Query: 158 IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY---------WTERLVELNASSPV 208
             E  E+  ++L     E+ G      A  L               +  R     A    
Sbjct: 180 EPEELEQFTQELANEIGERVGKGTQKTAQLLMALQSRLQLLPIVADYRRRKRAEGAVDFA 239

Query: 209 GYQ-----IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                    A    E   + +   G +++     +  A   L+ ++     G  V    D
Sbjct: 240 DQLHYAASAAAAAPEVGRVERERFGVVLLDEYQDTSHAQVELLKSLFG--GGHPVTAVGD 297

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                  W   +  + +    +  ++   +    +L                       R
Sbjct: 298 PCQSIYAWRGASTGTLSRFPGDFPHADGTEADRLELTASW-------------------R 338

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
           +     +     +  +R      + +        +V     +   +EA  +A  +     
Sbjct: 339 NRASILTVANTVSEPLRTMGFPVSPLEPGVPGEGEVTAAMLNTADDEAEWVATRIYRLWA 398

Query: 384 ENK-----------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
           +N              +A++   R+   R++  L   G+ +++     L        L S
Sbjct: 399 DNGFAPGSPVEGMPPTTAVLARRRSQIPRLEKALRAKGLPVEVIGLGGLLDAPEVRELHS 458

Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            L  + +     A   L+  P  + G  +     A  A EL   R           ++ +
Sbjct: 459 TLTVLARPTAGPAFMRLLTGPRWRIGPRDIAALHA-RARELAPERRGFEPSAEGLNEASL 517

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            + +    +        +      +E    L   + Q ++ L+                 
Sbjct: 518 AEALEDLGDLRRYSDAAAERYTALREELGYLRSRLDQPVSDLIA---------------- 561

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                   L+   LD    +     E     +                  + ++D     
Sbjct: 562 ------EILKVSGLDIEVAVHRGDSERLDAFIDEAVRYTSTASLPSLDGFLSYLDAAEER 615

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
             G  +    E +  + IL    ++ L +D + + GL +GV P       +L+   +   
Sbjct: 616 ERGLELTGTTEHTGAVQILTVHAAKGLEWDCVAVPGLAKGVLPGKVMGGSWLTDTGKLPY 675

Query: 673 NLKT-------------------------------AEKYIGQAAHDFEMANGTRHLIYT- 700
            L+                                    + +    +      R  ++  
Sbjct: 676 PLRGDAAELPYFRLGGVTKAAELSRAEAEFKKDVQFHHEVEERRLAYVALTRARTHLFAC 735

Query: 701 -RSLRENNIPTIASRWLQRLLVLGGT-DFFDNLKKRGQCYLDWTRKLDYTTKQPH----- 753
                +       S +L   +  GG  D +          L      D+   +P      
Sbjct: 736 GYWWDDGESAREPSPYLDETVAAGGRVDEWIEDPGEENPLLATELSADWPEPEPLGSNQI 795

Query: 754 -----------------------------------YKRPKPFPPLEAQPRTYSFSEIKQL 778
                                                           P   S S++   
Sbjct: 796 TVAAAAGAVRASDGALDDSAQAKRWAEEAELLLAERAESASDGMEVPVPSQLSVSQLVAW 855

Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
             D     AR    +   P          RGT FH  + +        +  ++       
Sbjct: 856 HADAQEFAARLRRPVPEPPAPHTR-----RGTAFHAWVEKRFDGGTLFDMDDLPGAADGE 910

Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
            D+  E   L    +                       S   I V +P    +E  G+ +
Sbjct: 911 PDTDAELAALQEAFNASEWA------------------SRTPIAVEVPFVTVLE--GVVV 950

Query: 899 TGFADRIDLLKSGFVDITDYKTGDNP 924
            G  D +     G  +I D+KTG  P
Sbjct: 951 RGRMDAVFATDDGGYEIVDWKTGRPP 976


>gi|332200489|gb|EGJ14561.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae GA41317]
          Length = 1091

 Score =  150 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 120/932 (12%), Positives = 249/932 (26%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +           S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAEKLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752
                 +  +G    D                                 +R +     Q 
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715

Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             + P                       Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +         Q    +  FE           
Sbjct: 774 ELRLHPDARSHGNFLHRIFERALQLPDEDSFDNRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +    IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPVIETIKEEANFGGKEQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
              G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KADGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|256419942|ref|YP_003120595.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
 gi|256034850|gb|ACU58394.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
          Length = 1066

 Score =  150 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 92/899 (10%), Positives = 234/899 (26%), Gaps = 88/899 (9%)

Query: 59  ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL-SYNLNPPVSNIQRLLELARLIL 117
            +R       G  +  +  I +      E    +L L   +   PVS ++++  L +LI 
Sbjct: 76  AMRKRLTGFIGPDAYRV-NIHTFHSFCNEVIQDNLSLFDKHSLDPVSELEKIQLLKKLID 134

Query: 118 IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK--WEDLHALK-- 173
            +    P           +       + +       D I+   T   +        +   
Sbjct: 135 GFTKDNPLKRYRGDVYFEMKNLAQLFSTMKKEGWTVDYINEAITAYIESLPSREDFIAKK 194

Query: 174 -----------NEKYGMWWLLAADFLKIASKY--WTERLVELNASSPVGYQIALMRAEAE 220
                       ++                ++  +T  +              ++ A  E
Sbjct: 195 AAGTYVRGDVRTDRIAREKEKMIRLQAAVEQFPVYTAFMHTAGRYDFDDMINWVIGAFEE 254

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I++     +     RL+  +        +    D       +   +
Sbjct: 255 YPDLLADYREKYQYILVDEYQDTSGTQNRLVQLLTEDQESPNIFVVGDDDQSIYRFQGAS 314

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++  + +     + H           L      V+ + +V+  +   +         P+
Sbjct: 315 IENMALFAETFADNLHT--------IVLTHNYRSVQPILDVAMSLIANNGNSRLVNQLPE 366

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALIT 393
                   I   + P          +   +  R+E   I   +   L++     + A+I 
Sbjct: 367 LDKQLIAAIPAAQSPVPV-------IRRYNTSRDEMTDITQQIARLLEKGIAPGRIAVIY 419

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
            +      +     +  +       I L     +  + S+L           +A  V  P
Sbjct: 420 RENKYGEELARYCRQQQLPFYSKRSINLFEVPFARKVLSILR---------YLACEVDTP 470

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            +             + L              + +++             ++  W    +
Sbjct: 471 YSGDDL-------LFSILHYDFYNIPAIEVAKISIRAAEKGYREKSSIRQYLQEWAHTRN 523

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                 A      ++     +     + ++       +            +   E     
Sbjct: 524 LTLFTAAPE--QALVDFSAMMEKLIRDAHNLTLQQLFAAVINECGVLSYAMQSPE----- 576

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANA-IEWIDIITRLIDGETVKPKIEKSSTLFILG 632
             W  +  + L     +       +     ++ +D++        +       + + +L 
Sbjct: 577 KPWLMKVLQALFDFVKEETHRNPDLTIAPFMDMVDLMRHNGITIPLVQVSGNETGINLLT 636

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L F+ + + G N  +W +        S          T+          +    
Sbjct: 637 AHGAKGLEFEYVFIAGANAYLWEEKVKNGSGFSFPDTLFTTTLTSTDEQELRRLFYVAIT 696

Query: 693 GT-RHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
              +HL  +    R +  P   S ++  +  L             +        LDYT +
Sbjct: 697 RAEKHLYISYPEYRTDGKPLEPSLFVTEI--LDQHQLPVEKVIIPEEVQFRFAALDYTPE 754

Query: 751 QPH--YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                 K  +P           + + +   ++ P   Y + ++++          + T+ 
Sbjct: 755 LAPEIAKTDQPLIDNLLANFVMNVTALNNYLDCPLGFYYKNLVRVP-----SGRSENTEF 809

Query: 809 GTLFHNIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
           G+  H  + +L  K         P     ++    S                    +   
Sbjct: 810 GSAVHYALEKLFLKMQESGRYEFPSKEEFIRDFTWSMLRN---RESFTRESFERRLEYGR 866

Query: 866 SFLEHEEKIQSSI--EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD-ITDYKTG 921
             L+H          + + V    +  +   G+ L G  D+++    G +  + DYKTG
Sbjct: 867 DILDHYYDTWLPHWNKVVSVERNIRSVV-VNGVPLKGKIDKLEF--DGNLVNVVDYKTG 922


>gi|322378445|ref|ZP_08052898.1| exonuclease [Helicobacter suis HS1]
 gi|321149136|gb|EFX43583.1| exonuclease [Helicobacter suis HS1]
          Length = 769

 Score =  150 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/428 (17%), Positives = 146/428 (34%), Gaps = 55/428 (12%)

Query: 604  EWIDIITRLIDGETVKPKIE-KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
               D++   +     +   +     + +L  LE R L+F+ ++L    + + P     N 
Sbjct: 377  PLADLLELYLQELKKQRIDDVSGGKVRVLDVLECRGLSFERVVLLDFTDHLVPCIPDHNL 436

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
            FL+   ++ LN+ T + +     H +      T+ +     + +    +     L     
Sbjct: 437  FLNSTTRARLNIPTLKDHENLQKHYYYQILQNTKQVDIAYYVDDKTTHSKMLLELDLNTQ 496

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
            +   +F     +    YLD                 +       +  ++S ++    +  
Sbjct: 497  ISPANFALFPPENKHDYLD-----------------EECKGKVLEGFSFSATKFNDYLTC 539

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
            P   Y + I  L          D+ + GT  H ++ +  ++  N    + + L++   D 
Sbjct: 540  PRRFYLKYIKNLTPPSK-----DQFNMGTFLHKLLKKHYEEHKN-TPVKASDLLELAQDE 593

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
                      +  +   +      +F E E++I  S E +      K +I   G    G 
Sbjct: 594  QLN------ALQRLEFEVAVDKMSAFFEKEKEILQSREVLVCEKKFKTSIA--GFTFNGK 645

Query: 902  ADRIDLLKSGFVDITDYKTG-----DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             DRID L+ G   I DYK            E  ++  D QLS+   AL     S +   +
Sbjct: 646  IDRIDRLEDGSYAILDYKYKSKDKLKVDTLENMEESQDYQLSIYHLALA----SSLQDAR 701

Query: 957  VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016
            +  +++  LK+   ++            E  +  LK L  I+        PF    R ++
Sbjct: 702  I-RVYFYDLKKGELLEEYLQVVHFK--QEQLQNQLKKLTSIM--------PF--EKRPNK 748

Query: 1017 KSNIQSEY 1024
             +     Y
Sbjct: 749  DNCSYCPY 756


>gi|149013114|ref|ZP_01833960.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP19-BS75]
 gi|303260558|ref|ZP_07346524.1| exonuclease RexB [Streptococcus pneumoniae SP-BS293]
 gi|303265227|ref|ZP_07351138.1| exonuclease RexB [Streptococcus pneumoniae BS397]
 gi|303266990|ref|ZP_07352864.1| exonuclease RexB [Streptococcus pneumoniae BS457]
 gi|303269650|ref|ZP_07355408.1| exonuclease RexB [Streptococcus pneumoniae BS458]
 gi|251764801|sp|B2IPX4|ADDB_STRPS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|147763059|gb|EDK70002.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP19-BS75]
 gi|301801980|emb|CBW34708.1| putative ATP-dependent exonuclease subunit B [Streptococcus
           pneumoniae INV200]
 gi|302638271|gb|EFL68740.1| exonuclease RexB [Streptococcus pneumoniae SP-BS293]
 gi|302640821|gb|EFL71210.1| exonuclease RexB [Streptococcus pneumoniae BS458]
 gi|302643470|gb|EFL73743.1| exonuclease RexB [Streptococcus pneumoniae BS457]
 gi|302645198|gb|EFL75434.1| exonuclease RexB [Streptococcus pneumoniae BS397]
          Length = 1091

 Score =  150 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748
                 +  +G                + + ++                       LD  
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715

Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             +       P                 Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|41409398|ref|NP_962234.1| hypothetical protein MAP3300c [Mycobacterium avium subsp.
            paratuberculosis K-10]
 gi|41398229|gb|AAS05850.1| hypothetical protein MAP_3300c [Mycobacterium avium subsp.
            paratuberculosis K-10]
          Length = 1096

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 121/1040 (11%), Positives = 258/1040 (24%), Gaps = 123/1040 (11%)

Query: 45   ASVTIYVPTKRAI----QELRSEFIEITGKK--------STILPIIKSLGDVVEEKFTAD 92
              V     T++A     + +RS    + G            + P    +       F   
Sbjct: 64   GQVLGLTFTRKAAGQLLRRVRSRLARLAGVGLGAASPNHGAVDPEAAPVVST-YHAFAGS 122

Query: 93   LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAK 150
            LL  Y L  PV    RLL    L  +  + +      L  +   +   S    +W  LA+
Sbjct: 123  LLRDYGLLLPVEPDTRLLSETELWQLAFDVVNRYRGPLRTDKTPAAVTSMVLRLWGQLAE 182

Query: 151  NLADIIDIIETEEKKWEDLHALKNE----KYGMWWLLAADF---------LKIASKYWTE 197
            +L D    +     + E L          +                    L    +   E
Sbjct: 183  HLVDT-SQLRETHLELERLVHALPAGPYQRDRGPSQWLLRLSGTQSERAELVPLLEALDE 241

Query: 198  RLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--A 250
            R+  +          +  R  A         +G    +++     +  A    +S +   
Sbjct: 242  RMRAVKVMDFGMQMASAARLVAAFPQVGADLRGRYRVVLLDEYQDTGHAQRIALSALFAG 301

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
               +G  +    D       W   +  +    +++   S      + +L          +
Sbjct: 302  GVDDGLALTAVGDPIQSIYGWRGASATNLPRFTTDFPRSDGTPAPVLELRTSWRNPPRTL 361

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
            +    +S E   RS+ +      PD         L   +   ++  +D   I+A   R  
Sbjct: 362  RVANAISAEARRRSVAVHALRPRPDAPPGTVRCALLPDVVAEREWIAD--HIDAHYRRAR 419

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A  ++             +A++      A  +   L   GI +++     L +    + L
Sbjct: 420  ADGVS----------PPTAAVLVRRNADAAPIADALRARGIPVEVVGLAGLLSVPEVAEL 469

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR-AKNALELVALRGNKNSYDIMDLK 489
             ++L  +       A   ++  P  + G  +         AL      G   + + +   
Sbjct: 470  VAMLRLVADPTAGAAAMRVLTGPRWRLGARDLAALWQRARALGGAGTAGGPATAEAIASA 529

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
            +   +  A                         +     +                  + 
Sbjct: 530  ADPRNVEADAVCLADAIADPGPAEGYSAAGYARIAALAAELSALRAHLDHPLGDLVAVVR 589

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
                    V             L        G    +       + S   A  + ++D+ 
Sbjct: 590  RVMDLDCEVRAAAAAGWAGTEHLDAFADVVAGYAERADTGGTDASASASVAGLLAFLDVA 649

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV-- 667
              + +G    P       + +L    ++ L +  + +  L+ GV+P  TAK  +L+    
Sbjct: 650  ESVENGLPAAPLAVARDRVQVLTVHSAKGLEWQLVAVAHLSGGVFPSTTAKTTWLTDAAE 709

Query: 668  ----------------------------------MQSDLNLKTAEKYIGQAAHDFEMANG 693
                                              +          +   +    +     
Sbjct: 710  LPPLLRGDRARPGALGIPVLDTSDVTNRKQLSDKISEHRRQLEQRRVDEERRLLYVAVTR 769

Query: 694  TRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
                +             P   S +L  +  +                            
Sbjct: 770  AEDTLLVSGHHWAATGIKPRGPSDFLCEIKDVIDASAAAGDPCGTVEQWAPAPADGERNP 829

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                     +P      R         L+    A                 D    +R  
Sbjct: 830  LRDNAVEAVWPADPLASRRGEVERGAALVRQAMAAEPGDPGADVEGWAADVDALLAERAR 889

Query: 811  LFHNIITELIKKR-------INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF--- 860
            +       L  +        + ++       ++  + S  E   L  +    W   F   
Sbjct: 890  VTGPPPQALPGQLSVSSLVGLARDPAGAARRLRHRLPSRPEPHALLGNAFHAWVQKFYGA 949

Query: 861  --------------------HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
                                 +++       E   ++   + V +P +M I      + G
Sbjct: 950  ECLFELGDLPGAADSDVGDTAELAELQAAFLESPWAARTPVAVEVPFEMPIGDT--LVRG 1007

Query: 901  FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
              D +     G   + D+KTG  P    A +    QL++   A    + +++    V   
Sbjct: 1008 RIDAVFAESDGGATVVDWKTGAPPDSPEAMRQAAVQLAVYRLAWA--ALAKVPESSVRTA 1065

Query: 961  F-YIRLKQKFKIDCITNDKK 979
            F Y+R +     + +    +
Sbjct: 1066 FHYVRARTTVVPEALPTSDE 1085


>gi|116873699|ref|YP_850480.1| ATP-dependent nuclease, subunit B [Listeria welshimeri serovar 6b
            str. SLCC5334]
 gi|123466556|sp|A0AL19|ADDB_LISW6 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|116742577|emb|CAK21701.1| ATP-dependent nuclease, subunit B [Listeria welshimeri serovar 6b
            str. SLCC5334]
          Length = 1157

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 119/967 (12%), Positives = 268/967 (27%), Gaps = 128/967 (13%)

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              L  +  L +     +       LA +   ++ EE    DL                  
Sbjct: 97   AALDQKDKLKIFSKATSRKGFYSELAKLFKEMKQEEVSVADLENSAI-NMSKSVTNKIHD 155

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + +  + + E L            + L+  +        +  III G T        ++ 
Sbjct: 156  ISLIYQKYEELLA--GKFLENEDYLRLLADKIIESDYLNQTEIIIDGFTSFSKQELTVIE 213

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +    +   V   L+      I   + E +    S+         ++L ++     I  
Sbjct: 214  KLMEKCDKVTVSLTLNV---PEIQKGLEEYNMFKQSTEAY------FALLEMAKLNKISV 264

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            E  K               ++  +                     ++   D+A+ +A+N 
Sbjct: 265  ESDKLFLENKRAKSDSLAFLADVWGNNKFV-------------TFEEKPQDLAIHQANNR 311

Query: 368  REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
            R E   IA  +R         +  A++T +  +     +  +  F I I I     ++  
Sbjct: 312  RAEIEGIAREIRQLTLKGYRYQDMAILTRNISDYDVLCETVMESFDIPIFIDKKRAMAKH 371

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL------------- 471
                 + S ++AI     +  I   VK            + R K  +             
Sbjct: 372  PFIEFIRSSIDAILFNWKYEPIFQAVKTEFFFDVSENTSIMRRKADILENYVLENGIQNK 431

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV---------- 521
                  G+     I  L + +L +   +     + +    L  E   +            
Sbjct: 432  WKWEKEGDWIYRKIRGLSTNLLPQTDEELETQAIINEMRNLIVEPLSILENNLAKARTGT 491

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLS--ISDWTKLTVTCLQNVCLDEHRK-----LPN 574
                 +   +  +   +  ++           +  +       +V              +
Sbjct: 492  EFAMALYHFLEQVKAVEHLESWRQTAEENGYLELAREHEQAWSSVSELLDEFVEVLGEES 551

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
            L      + +++    +  +      + I   D+    +    V   I  +  +  L   
Sbjct: 552  LDINSFAEIVATGLDALEFSLLPPSLDQIVLSDMENAKLLDMKVIFAIGMNDGIMPLRQK 611

Query: 635  ES-RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD------ 687
            +   L + D   L   N  + P           +    ++L + + ++   A D      
Sbjct: 612  DKGILSDQDRDSLRAENSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671

Query: 688  ----FEMANG------TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD-FFDNLKKRGQ 736
                +              +  T     ++     S +++      G       + KRG 
Sbjct: 672  SESNYLRKIKGQFKKLNEEVYLTDPSLLSDEEQ--SSYIRSKQATLGLLTSQLQMYKRGY 729

Query: 737  C-----YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY---------------SFSEIK 776
                  +  +    + T +    K+       E + +                 S S ++
Sbjct: 730  PLSNVWWDAYNGYFEDTKESKVAKQVLSSLYYENKTKALHETTAKNLFGENIHASVSRME 789

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP------- 829
            +  +  +  +A+  LKL+   HF       D G +FH  +  +  +    N         
Sbjct: 790  KFFSCEFQHFAQYGLKLEERAHF--KLQAVDMGEIFHGAMEWISAELKRNNQDWGNLTEE 847

Query: 830  ---EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFV 883
               ++  L    +    + E L         ++   +I      + +E+   S+   I +
Sbjct: 848  ECRQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPIGL 907

Query: 884  NIPAKM--AIESIGIHLT--------GFADRIDLLK-SGF--VDITDYKTGDNP-KKETA 929
             +   +   I S+ I L         G  DRID+ +      + I DYK+  +       
Sbjct: 908  EVDFGLKGDIPSLKIPLKSESELLLQGRIDRIDVAEQDDRTFLRIIDYKSSSHDLALTEV 967

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
               +  Q+      +   +   I    + A + Y  +  +F         +  + +    
Sbjct: 968  YYGLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQFVQADKELSDEAIAKELQKS 1027

Query: 989  KSLKNLI 995
              +K LI
Sbjct: 1028 SKMKGLI 1034


>gi|322380356|ref|ZP_08054564.1| exonuclease [Helicobacter suis HS5]
 gi|321147226|gb|EFX41918.1| exonuclease [Helicobacter suis HS5]
          Length = 769

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/428 (17%), Positives = 146/428 (34%), Gaps = 55/428 (12%)

Query: 604  EWIDIITRLIDGETVKPKIE-KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
               D++   +     +   +     + +L  LE R L+F+ ++L    + + P     N 
Sbjct: 377  PLADLLELYLQELKKQRIDDVSGGKVRVLDVLECRGLSFERVVLLDFTDHLVPCIPDHNL 436

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
            FL+   ++ LN+ T + +     H +      T+ +     + +    +     L     
Sbjct: 437  FLNSTTRARLNIPTLKDHENLQKHYYYQILQNTKQVNIAYYVDDKTTHSKMLLELDLNTQ 496

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
            +   +F     +    YLD                 +       +  ++S ++    +  
Sbjct: 497  ISPANFALFPPENKHDYLD-----------------EECKGKVLEGFSFSATKFNDYLTC 539

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
            P   Y + I  L          D+ + GT  H ++ +  ++  N    + + L++   D 
Sbjct: 540  PRRFYLKYIKNLTPPSK-----DQFNMGTFLHKLLKKHYEEHKN-TPVKASDLLELAQDE 593

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
                      +  +   +      +F E E++I  S E +      K +I   G    G 
Sbjct: 594  QLN------ALQRLEFEVAVDKMSAFFEKEKEILQSREVLVCEKKFKTSIA--GFTFNGK 645

Query: 902  ADRIDLLKSGFVDITDYKTG-----DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             DRID L+ G   I DYK            E  ++  D QLS+   AL     S +   +
Sbjct: 646  IDRIDRLEDGSYAILDYKYKSKDKLKVDTLENMEESQDYQLSIYHLALA----SSLQDAR 701

Query: 957  VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016
            +  +++  LK+   ++            E  +  LK L  I+        PF    R ++
Sbjct: 702  I-RVYFYDLKKGELLEEYLQVVHFK--QEQLQNQLKKLTSIM--------PF--EKRPNK 748

Query: 1017 KSNIQSEY 1024
             +     Y
Sbjct: 749  DNCSYCPY 756


>gi|307127337|ref|YP_003879368.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae 670-6B]
 gi|306484399|gb|ADM91268.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae 670-6B]
          Length = 1091

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 252/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEVMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILTPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQTEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752
                 +  +G    D                                 +R +       
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYQQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715

Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             + P                       Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLTKDTLQALYPAKQEFYLSTSGLTEFYLNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPIQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|302037408|ref|YP_003797730.1| hypothetical protein NIDE2085 [Candidatus Nitrospira defluvii]
 gi|300605472|emb|CBK41805.1| conserved protein of unknown function, putative ATP-dependent
           nuclease, subunit B [Candidatus Nitrospira defluvii]
          Length = 1076

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 132/1046 (12%), Positives = 275/1046 (26%), Gaps = 163/1046 (15%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
           PF   +   L++   V             A+V + VP+ +  + L+   + +    + + 
Sbjct: 8   PFHPTLESQLVHDLRVLKSGNPQ------AAVALVVPSDQLCRSLKRLLV-VKQGLALLN 60

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
             I S   +  +     L          +   R +EL       R       +++     
Sbjct: 61  VHILSFHQLALQLQRERLTTVGA-----AGAVRQIELVTDTFFERLLQHLGQRNVPQTGA 115

Query: 136 LSLPISPANAI-WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
           L LP  P+ A   L  +L D+ D           L A++  ++          L      
Sbjct: 116 LRLPQLPSGAWPALWASLRDLKDATVDSGL---ALRAVEEGQFPPEDGEKLKGLFTLYAA 172

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
                  L   SP      +           +   +   GS         L+ +++    
Sbjct: 173 LRNGSAALGVGSPDDLAALVTDFVPASPFLRSLSGLWYYGSYDLTQTQLTLLESLS---- 228

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
                                   +   +     S  P Y                    
Sbjct: 229 -----------------------VSLPVTVYFPLSERPAYGF------------------ 247

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                   R  +    +     +D R      +  P   +    V +  A    +E   +
Sbjct: 248 -------ARQFLERHLYPIAGGADERAGAASGDAAPASPEVHVSVEVRNAAGIDDELTLV 300

Query: 375 AIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSIL 430
              +   ++ N     +  ++       +        +  I    SA  PL        L
Sbjct: 301 CKQILSLVETNGFAFDEIGVVGRTLVPYQASLKRTFDQHRIPFLSSATAPLLQEPSVKTL 360

Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             L           A+  ++  P  +    ++     +  L   A+     +    + + 
Sbjct: 361 LHLARLKGSGLHRPAMLDVITSPWNRRLTADRGGVEPRPDLWRSAVLALGITRGEEEWRR 420

Query: 491 LVL--DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
           L       +   +       +      D     LL   +   I  +         +    
Sbjct: 421 LAQLGRLESWSSDADDPVTEELESLAIDGVQLRLLWGCLSPLIEDVKRLPEQGGYSAMTD 480

Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS-CIKANAIEWID 607
           +     +  +T    V              +  + LS +F+++       +     EW D
Sbjct: 481 AFCSLAETHLTVPLGVSTAIDEMSQWDDASDVNEALSGVFAELRALDRLDVNVTWDEWAD 540

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
               ++   T          + +L  + +R L F  L L G+NE ++P+   ++ FL   
Sbjct: 541 TFAEMLARATRPLAPPSHHGVQVLDAMAARGLGFRALFLIGMNEKLFPRYIHEDGFLRDR 600

Query: 668 MQSDLN------LKTAEKYIGQAAHDFEMANGT--RHLIYTRSLREN-NIPTIASRWLQR 718
            +  L+      +    +  G+ A  FE+   +    L  +    +    P   S +L  
Sbjct: 601 HRLVLSETLGYKIDQKLQGYGEEALLFELLRASAGERLYLSYQRADAAGRPLAPSGYLDA 660

Query: 719 LLVLGGTDFFDNLKKRGQCYLDW---------------------------TRKLDY---- 747
           + V   +   ++L    + + D                               L+     
Sbjct: 661 VGVAPHSSVPESLFALPRRWPDRVDLPLFMPHLQTREELSVSTVLQGRDVAALLEAIGRD 720

Query: 748 --------------------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                                +                  R  S + ++     P+  ++
Sbjct: 721 GLLFSHGLGAQGVIESGHPALSAYDGILEHAGAHWQTVTERGLSPTALETYARCPFQYFS 780

Query: 788 RRILKLDFIPH-FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            ++LKL+ +      +      G L H+ +       I +  P     +  I        
Sbjct: 781 GQVLKLESVRPVPSMELTPPAMGQLCHDALRRCYLALIQQGWPATALSVSAITAEVNRAV 840

Query: 847 NLPPHI------------DIIWRHLFHKISHSF--LEHEEKIQSSIEKIFVNIPAKMAIE 892
                               + +    ++  +   L+ E  + S        + A   + 
Sbjct: 841 LQASEAYARTHSTGYALTWELAQESVRRLIEATIMLDREAALASGFLPAEFELDANGMLP 900

Query: 893 SI----GIHLTGFADRIDLLK-SGFVDITDYKTGDNPKKETAQKLI--------DPQLSL 939
                  I L G  DR+D    SG V + DYK   N + E   + +          Q +L
Sbjct: 901 DGSGGQEIPLRGRWDRLDRHPGSGAVRVIDYKYRANDRVEAKDRNLLQAALRAQRLQPAL 960

Query: 940 EAAALKAGSFSQIDCRKVANLFYIRL 965
            A    AGS       +   + ++ L
Sbjct: 961 YAVMTAAGSSGDQQGPQPEQVEFLYL 986


>gi|124486139|ref|YP_001030755.1| methyltransferase type 11 [Methanocorpusculum labreanum Z]
 gi|124363680|gb|ABN07488.1| ATP-dependent nuclease subunit B-like protein [Methanocorpusculum
            labreanum Z]
          Length = 915

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 91/760 (11%), Positives = 213/760 (28%), Gaps = 111/760 (14%)

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLA 399
            T     +IP + +    V   +  + R E  S   ++   ++     K  AL+T     A
Sbjct: 188  TRPPVTEIPGLPETCRGV--YQYTDTRTELRSALESIAALIESGVPPKDIALLTPSLPSA 245

Query: 400  RRVKLELTRFGINIDISAGIPLS----------TTLHSSILTSLLNAIFKLNDFMAIATL 449
              +  EL      +      PL                    + L A         +  +
Sbjct: 246  LPLLDELVPDFSVLLEGTRRPLGFFAGEDIPIENLPPVRCALAWLAAFAFDCRIDDLKII 305

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
            ++ P            R + A  +      +              R   ++         
Sbjct: 306  IESPYFSLKKDWLTAGRLEKAGIITKTEKGR-----------AAWRTVAERLAAARKKEI 354

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
                   +     L+D + + +                 +++   +     L  +   + 
Sbjct: 355  GEHDAAFQASLDRLLDRLDENLE-------------HTGTLAGHCRALKADLSALGWTKI 401

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIET-GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
            +  P             L  K+  T  + +     E+  +++R  +  T     E     
Sbjct: 402  QMKPQDE--AARHAFLRLLDKLALTSLAEVSYTVREFYAMLSRFCEKTTKISYPESKHAF 459

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            F              + + GL+    P+  A  P L+    + +     +  +  + + F
Sbjct: 460  FAGDLRSVAGTKRPYVFITGLSADRIPRIEAAIPLLNAQETARIQPDRVQNLLDASRYYF 519

Query: 689  EM--ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG------TDFFDNLKKRGQCYLD 740
                    + LI + +  +       S +L RL                  + R    L 
Sbjct: 520  HAAGLAAEKQLILSCAGHDGEKSLTPSPYLTRLAEPEPKSPGFLAHSMTANQTRAGELLA 579

Query: 741  WTRK-----------LDYTTKQPHYKR-------------------PKPFPPLEAQPRTY 770
              R+           L+   +    +                     + F     +   +
Sbjct: 580  AGRENECEGLFGIPSLETAAEIIGIETVDRTGTPGIYDAEFAGDGIAEAFAAAYTEKTEF 639

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            + + +++    P+  Y    L+L+         +R   GT+ H  +    ++ ++  T E
Sbjct: 640  APTVLERYRECPFKWYLADHLRLE--NPADFSAERIIVGTVMHKAMERFFREYMSPLTEE 697

Query: 831  INHLMKQIIDSHFEKENLPPHIDI-IWRHLFHKISHS---------FLEHEEK-IQSSIE 879
                  + +     +E    HI    W+ + +    +          +  E     +   
Sbjct: 698  NESDAAEFLKKLVTEEFKNRHIKTPSWQSMLNGYLGNGGLESSCDLIIRLETGFYAAGFR 757

Query: 880  --KIFVNIPAKMAIESI-GIHLTGFADRI---DLLKSGFVDITDYKTGDNPKKETAQKLI 933
                ++       I       +TG+ DR+   +  K     + DYKTG+    +  ++  
Sbjct: 758  TLPEWLEQKVTAEIPGGDPFTVTGWVDRVMFNEQTKE--FAVVDYKTGNVKTWKELEEGS 815

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC---ITNDKKKYSADELSEKS 990
              Q+ L   A++      +         Y+++      D    +   K++ S +E+ + +
Sbjct: 816  ALQIPLYTEAVRQ-----MTGCSPLPGTYLKIAPDEVKDKNPYLVRGKQQKSVEEVGDAA 870

Query: 991  LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
                 E   +++ G+   +S        +    Y  + R 
Sbjct: 871  FAFCRETREMMKAGKCGTVSGET---CPDDYCPYKRICRF 907


>gi|319778428|ref|YP_004129341.1| hypothetical protein TEQUI_0246 [Taylorella equigenitalis MCE9]
 gi|317108452|gb|ADU91198.1| hypothetical protein TEQUI_0246 [Taylorella equigenitalis MCE9]
          Length = 937

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 98/718 (13%), Positives = 210/718 (29%), Gaps = 89/718 (12%)

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMS-LDENKKKSALITADRNLARRVKLELTRFGI 411
            +    +++L  AD+   E                 K+ A++  +      +         
Sbjct: 262  RPRAQNISLFSADSIETELKYAIDWASHLMASNPNKRLAIVVPNLQNNLLLIERELANQK 321

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP-EKYLSRAKNA 470
            +  IS G  L        +      I   +       LV +      F   +        
Sbjct: 322  HWHISLGRNLDEWSLIRSVICWFELILNFHKQKIPLQLVGNAFLNAEFGFSESERETLAH 381

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
            L+ +  +          L  L+   I   K    + +         ++      D     
Sbjct: 382  LDYLLRKRKGKFISHKQLSELMYKHI--HKKTETLFNENDDWINAGQKDISHWADAFRIT 439

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +T          ++      +                          +   KTLSS+   
Sbjct: 440  LTEFEFPADAPQNSTNYQLCTAL------------------------DNVLKTLSSMHQM 475

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +       K +  E +D+  +L+     + + E  S L I+G  E     +D + + GL 
Sbjct: 476  L------PKIDVYEAVDLFKKLLSNTMFQVQREADSKLDIMGLYEVEGGRWDHVWVCGLQ 529

Query: 651  EGVWPKNTAKNPFLS--RVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENN 707
                P + + NP +     + + ++L T       +   F    + +  +I + S  E N
Sbjct: 530  SNTLPPSPSYNPLIPLLSQINAGVDLTTWNSTWELSEQIFNGILHTSNDVILSYSDLEEN 589

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                 S +L   +          + KR +      + LD                 E + 
Sbjct: 590  RKIYPSSFLIPYMEKMEVLKPPAIPKRDK---AIMQTLDDRDGLT----------FEDEI 636

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPH-FKKDPDRTDRGTLFHNIITELIKKRIN- 825
            +      I+    +P   YA+  L +D +    K D + + +G  +H I+    KK  + 
Sbjct: 637  KRGGAHMIELQSINPLWNYAKYRLNVDELRPYPKDDYNASIKGDFYHKILELFYKKYRSS 696

Query: 826  ------KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                  ++      L+     +         ++    +     +   F++ E   +S  E
Sbjct: 697  SSVTKIEDLSLELDLIIDQSANEVLAHIESVNMQNAIKSAAKAVMVYFIQQEISSRSPFE 756

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE-------TAQKL 932
             + V        E + I+     DR+D +      I DYKTG                +L
Sbjct: 757  VVHVEKNEIYTKEYMDINF--KVDRVDRVGD-KYFIIDYKTGKPLTSTSMKKYWIDRDRL 813

Query: 933  IDPQLSLEAAALKAGSFSQIDCRKVANL------------FYIRLKQK------FKIDCI 974
               QL   A +++      +       L             Y+            +++  
Sbjct: 814  KKCQLPFYACSIEEEISENLIGVSNVFLHQGKLAQGSVLKTYVGFVDDVQSYFNDELNHD 873

Query: 975  TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
                 +    +L +     + +++  +++G  P   ++ + ++     E     R+ E
Sbjct: 874  VFKFTEADWWDLLKTWKSKINDLLDEIKDGISP---NVYIDKEDMKYCEIKPFLRIFE 928


>gi|152991781|ref|YP_001357502.1| hypothetical protein SUN_0185 [Sulfurovum sp. NBC37-1]
 gi|151423642|dbj|BAF71145.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 776

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/465 (15%), Positives = 172/465 (36%), Gaps = 51/465 (10%)

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +L   E+ + +   +   +           EW+ +  + +   T+     +   + +LG 
Sbjct: 355  DLLDAEKQERVEEKYRHFLTLFRDETLTYKEWLFLWLKTLSKITL--DDVRGGKVTVLGV 412

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN- 692
            LE+R ++F  +++   NEG  P +++K+ FL+  +++   L T +         +     
Sbjct: 413  LETRGVSFKGVVIVDFNEGTVPASSSKDMFLNSTVRTFAGLPTRQDREALQKQYYNRLLQ 472

Query: 693  GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
                     S  E+N   + S++L  L              + +        L     Q 
Sbjct: 473  QAESAAIIYSSSESN---LPSKFLYELG-----------LGKAERPKVPLSLLYGHPSQL 518

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
              +        +A  +T+S S +K  +      Y R I  +          D  + G   
Sbjct: 519  KAEEAPVVEAFDATAQTWSASRLKTWLECKRKYYYRYIKNIKAKEE-----DELNEGAFL 573

Query: 813  HNIITELIKKRIN-KNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLEH 870
            H ++ +L K++ +  +  E+   +  ++D    +E+       ++WR          ++H
Sbjct: 574  HTLLEQLYKEQDSYASEKELTKRLHALMDELLLEEDAKNRYRKLLWREKLKGFVKKEIDH 633

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN---PKKE 927
             +   +    +   +     I   G+   G  DRID   +  + + DYK+G     PKK 
Sbjct: 634  FK---AEWRVVERELEVVGEI--GGLKFKGRIDRIDQNATDTL-VLDYKSGRVEKEPKKL 687

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
              +K+ D Q+S+    L+       +  +  +L ++ + +K +   +T  +++ +   L 
Sbjct: 688  NPEKISDFQMSIYRQLLQ-------NRYQNISLAFVNILEKGEKQQVTLLEERNA---LL 737

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
             + + +L +         + F++      +     E+  +    E
Sbjct: 738  AEHIIDLKQ--------TKSFVAEKCDDLQKCTYCEFALMCGRGE 774



 Score = 46.5 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 42/159 (26%), Gaps = 27/159 (16%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
             PT RA++ +        G     LP +  + +  +     +     +       +QR+
Sbjct: 6   IYPTSRALRTVSQSLKNSDG----FLPTLMRMDEFEKRAVLVEERTQAD------PLQRI 55

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
           L L                       L +          +  L    + +  E   ++ L
Sbjct: 56  LFLKE------------ASRFDSFETLKVDRDLVRFFSKSDALFKFFEELSAEHVDYDTL 103

Query: 170 HALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
                  ++        + L+   + + E L     +  
Sbjct: 104 VQADAYAEFDKH----LETLEQLQRRYKELLEAKGLTDR 138


>gi|332530635|ref|ZP_08406568.1| exonuclease-like protein [Hylemonella gracilis ATCC 19624]
 gi|332039918|gb|EGI76311.1| exonuclease-like protein [Hylemonella gracilis ATCC 19624]
          Length = 915

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 112/698 (16%), Positives = 217/698 (31%), Gaps = 59/698 (8%)

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397
            D   +                 A+ +A +  +EA   A  +   L   +   A+   DR 
Sbjct: 220  DAPASFAPAASASVSDVRGGAHAVHDAIDAADEAQRAAACVLRHLQAGRAPVAVAVIDRA 279

Query: 398  LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            L RRV+  L R G+ +    G  LSTT   + L + L A  +     A+   +KH  A  
Sbjct: 280  LTRRVRAMLARHGVQMRDETGWKLSTTRAGAQLMTALRACARDAGSDAVLDWLKHAPACD 339

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                + L  A         R          L      ++        +   +   +    
Sbjct: 340  ETALRALEAALRRQPRRLWRHA-----AAGLAEASPAQLEGNVLQALLRDTEGWRAALTG 394

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
              +   +   L+ +  L++     ++   + +  + ++     L        +  P   +
Sbjct: 395  GRSTRTLQEWLEALHALLSLCGIWDTLIQDEAGLEVSRALHYALDETGQATPQLPPQALW 454

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                                 + +  E+   + R ++    KP         +L   +  
Sbjct: 455  AR------------------RRWSLSEFTGWVDRALESAIFKPAYPLREQAVLLPLAQML 496

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE--KYIGQAAHDFEMANGTR 695
              +F  ++L G +E   P         +   ++ L L T E  +   QAA D  ++    
Sbjct: 497  GRDFGAIVLPGCDERSLPAAPEPTGPWTAAQRAALGLPTREVLRAAQQAAWDEAVSRACP 556

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGTDF-----FDNLKKRGQCYLDWT-------- 742
              I  R    +  P +AS  + +L      +      + + ++                 
Sbjct: 557  IDILWRGHDSDGEPLLASPLVLQLQWQARGEQRAQAGWVSAREADDVTAAQAMVLVGSAP 616

Query: 743  -----RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                 R +          R  P      +P   S S  + L + PY  +A R+L L    
Sbjct: 617  DPRERRAVVPAPIAKPAPRLAPPWNETLRPTRLSASAYQDLRHCPYRFHALRLLGLREAE 676

Query: 798  HFKKDPDRTDRGTLFHNIITELI------KKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
              + + D+ D G   H ++                    ++   + +       ++    
Sbjct: 677  EMEGELDKRDFGLWLHAVLQTFHVQDTPNGASREDRAARLDAAAQAVAREQRLADDEFLP 736

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
                W  +        + HE +            PA+ A++   + L G  DR+D   SG
Sbjct: 737  YQAAWPRVREGYLDWLVTHEAE---GWRFALGEHPAEQALDI--VTLFGRLDRVDR-ASG 790

Query: 912  FVDITDYKTGDNPKKETA--QKLIDPQLSLEAAAL--KAGSFSQIDCRKVANLFYIRLKQ 967
             + + DYKT           + L D QL+  AA L    G  +     +V ++  +R   
Sbjct: 791  ALMVMDYKTEAEQTTRNRVKEALEDTQLAFYAALLSASEGEGAAFLPSQVVSVANLRAAY 850

Query: 968  KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
                +  T   ++   ++     L+ L+  VT L  G 
Sbjct: 851  VNVGEGETRLHEQPEIEQARVALLQGLVHDVTRLAEGA 888


>gi|315445540|ref|YP_004078419.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
 gi|315263843|gb|ADU00585.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
          Length = 1091

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 110/1093 (10%), Positives = 267/1093 (24%), Gaps = 135/1093 (12%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57
             ++  V    P          A    T+     +   N       V     T++A     
Sbjct: 22   EEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYATPGEVLGLTFTRKAAGQLL 81

Query: 58   QELRSEFIEITGKKSTILPII------KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE 111
            + +RS    + G   TI P          +       F   LL  + L  PV    RLL 
Sbjct: 82   RRVRSRLARLAGAGLTI-PAAGADLADDPVTIGTYHAFAGTLLREFGLMLPVEPDTRLLG 140

Query: 112  LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171
               L  +    + +    L  ++  S     A  + LA  L++ +   E       +L  
Sbjct: 141  ETELWQLAFRVVCEHPAAL--DTDKSPASITAMVLRLAGQLSEHLVDTEQLRDTHVELDR 198

Query: 172  LKNEKYGMWWLL-------AADFLK---------IASKYWTERLVELNASSPVGYQIALM 215
            L +      +             L                  R+ E           +  
Sbjct: 199  LVHTLPAGRYQRDRGPSQWLLRMLATQTERTMLVPLIDALHHRMREERVMDFGMQMASAA 258

Query: 216  RAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPT 268
            R  + H       +     +++     +  A    +S++      +G  +    D     
Sbjct: 259  RLASTHPAVGEQLRQRYRVVLLDEYQDTGHAQRVALSSLFGGGADDGLALTAVGDPIQSI 318

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              W   +  +    +++   S        +L        E +      S +   RS+ + 
Sbjct: 319  YGWRGASATNLPRFTTDFPLSDGTPAPTLELRTSWRNPPEVLHLANAASVDARRRSVEVR 378

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK- 387
                 P+         L + +   +                 A  +A      L  +   
Sbjct: 379  SLQPRPNAEPGSVRAALLSDVEAERDWV--------------ADQVAHRWHGGLAASGTA 424

Query: 388  -KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              +A++      A  +   L+R G+ +++     L      + + ++L          A 
Sbjct: 425  PTAAVLVRRNADAAPMADALSRRGVPVEVVGLAGLLAVPEVADVVAMLRVAVDPTAGAAA 484

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              ++  P  + G  +      +    +              + +        + +     
Sbjct: 485  VRVLTGPRWRLGARDLTALWRRAVTLVD-----TGPSASDAVSATAEIVAKLEPDADDAC 539

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
               +                 +  +   +T      S+     +++  +      +    
Sbjct: 540  LADAVCDPGPAAAYSPTGYARIVALGRELTALRAHLSSPLPDLVAEIRRTLGIDAEVRAA 599

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                        E       + ++    G+   +  + ++D   ++ +G         S 
Sbjct: 600  --QPISAGWSGTEHLDRFGDVVAEFASRGTPTASGLLAYLDTAEQVENGLAPAEVTVSSD 657

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL------------ 674
             + IL    ++ L +  + +  L   V+P   +   +L+        L            
Sbjct: 658  RVQILTVHAAKGLEWQIVAVPHLVGRVFPSTASARTWLTDAADLPPLLRGDCATVSAHGV 717

Query: 675  ------------------------KTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENN 707
                                        +   +    +       H +           +
Sbjct: 718  PVLDTSDVSDRKGLSDKIAAHKSSLDQRRTDEERRLLYVAITRAEHTLLVSGHHWGATES 777

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
             P   S +L  +  +      D                  T           +P      
Sbjct: 778  KPRGPSTFLTEIRDVIDASTEDGRPCGSIDVWADAPADGETNPIRGRVVEAVWPVDPVAG 837

Query: 768  RTYSFSEIKQLIN------DPYAVYARRILKLDFIPHF--KKDPDRTDRGTLFHNIITEL 819
            R         L+        P          +  +     ++D             ++  
Sbjct: 838  RRGPVDRGAHLVAEVLSGECPEVGSDDDHGWVADVDALLAERDLAAQRAVPSLPAQLSVS 897

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI--------SHSFLEHE 871
                + ++   + H +++ +    +   L       W   + +             ++ +
Sbjct: 898  AMVELGRDPEAVAHRLQRRLPRRPDSHALLGTAFHEWVQRYFQAEKLFDLDDLPGAVDAD 957

Query: 872  EKIQ---------------SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
             + +               ++   I V +P  M +      + G  D I     G   + 
Sbjct: 958  RQDRGELDELQTAFAVSPWAARTPIDVEVPFDMMLAGR--IVRGRIDAIFADGDGSFTVV 1015

Query: 917  DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
            D+KTG+ P           QL++   A                  +  ++    +     
Sbjct: 1016 DWKTGEMPTDPEVLAHNALQLAVYRLAWAR---LHGCPTSAVRAAFHYVRSGRTVMPDAL 1072

Query: 977  DKKKYSADELSEK 989
             ++      L+++
Sbjct: 1073 PEEDDLIALLADR 1085


>gi|111657165|ref|ZP_01407944.1| hypothetical protein SpneT_02001618 [Streptococcus pneumoniae
           TIGR4]
 gi|116516958|ref|YP_816489.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae D39]
 gi|116077534|gb|ABJ55254.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae D39]
          Length = 1099

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 253/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 118 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 169

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 170 QLAQESQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 227

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 228 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 266

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 267 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 326

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 327 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 386

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 387 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 424

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +           S+     
Sbjct: 425 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAEKLLQKWSVFLKEG 484

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 485 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 543

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 544 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 603

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 604 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 663

Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748
                 +  +G                + + ++                       LD  
Sbjct: 664 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 723

Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             +       P                 Q    S S + +   + Y+ + R +L L    
Sbjct: 724 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 781

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 782 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 841

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 842 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 900

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 901 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 951

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 952 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 983


>gi|288573980|ref|ZP_06392337.1| ATP-dependent nuclease subunit B-like protein [Dethiosulfovibrio
            peptidovorans DSM 11002]
 gi|288569721|gb|EFC91278.1| ATP-dependent nuclease subunit B-like protein [Dethiosulfovibrio
            peptidovorans DSM 11002]
          Length = 958

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 141/1031 (13%), Positives = 268/1031 (25%), Gaps = 158/1031 (15%)

Query: 47   VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
            V   VP     + L+   +E  G        I    D+  E  +A   +       +   
Sbjct: 29   VVYLVPGSSDREWLKDILLEE-GTFGREAFRIWRWDDLYREACSATGSVPM---VQIDPP 84

Query: 107  QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
               L L  L+     +  D++     +S               + L + +  +  EE   
Sbjct: 85   DHWLALHHLVRESLTRWSDLMPPGTGQSS------------FVQTLGETVRELIREEVPP 132

Query: 167  EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG---YQIALMRAEAEHLM 223
            E L               +  L    + + E L                +L+    E   
Sbjct: 133  EALSEALYPDGEDHPEEPSWLLANLYRRYLELLRSRGLMDSAAVSTEIASLIEENPEAAK 192

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
               +  I++ G      +   ++  +                    + N       +  +
Sbjct: 193  WLRRWRIVLVGFYSFTHSQLGMVRAM--------------------VRNGADVTLLSPEA 232

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                    P       +      +     +         R  + +        S      
Sbjct: 233  GLEGEYGAPSQLEGADVLRSKPSQSGCFVISG----GAARGEMETVVRDLALWSSGEGPL 288

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              +   P   +    V               +  LR      ++      A+  L   V+
Sbjct: 289  ADKGNFPGWGEVGMTVDFRSTS-------LASEVLRRYAVPFRRSEGRTVAETILWDTVR 341

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
                                           +           A L+  P    G  E  
Sbjct: 342  RA----------------------------WDCYRDGWQPEPTAELLCLPWFFHGLSE-- 371

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                      + +   +      DL S         +          +            
Sbjct: 372  --------RWLVMASPRGLKGWRDLASSEESLAEPLERVVAFAEAIGKGGT--------- 414

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
             + +L  +  LVT   +      +  + D  +L    L+     +          E    
Sbjct: 415  AEELLTAMKRLVTSSPDWREVLSSR-LEDRPELDEVVLELGSAVQELDRKLDRIAELQAD 473

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            L      +++ G  +          ++   +   V P   +S T+ + G     L +   
Sbjct: 474  LGDPGKAVLKGGDAMAF--------LSVWAESAVVWPGASRSGTMTLYGGTPPVLAHHRI 525

Query: 644  LILGGLNEGVWPKNTAK-------------NPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                G+    WP   A+             +  L        +L    +   Q    F  
Sbjct: 526  WAFCGVTAKNWPGPMAESPLLGDCHKELLHDMDLRGSRLDRTHLPLMSEKRAQREVLFRR 585

Query: 691  ANGTRH--LIYTRSLREN-NIPTIASRWL-----QRLLVLGGTD--FFDNLKKRGQCYLD 740
                    +I +    +    P   S ++      R +   G +     N+  R +    
Sbjct: 586  ILACGDDLVILSYPSLDGAGRPLPESPFIGGALRDRWIDELGKEVRSVGNVLPRWEEPAL 645

Query: 741  WTRKLDYTTKQPHYKRPK---PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
               ++    K     RP    P  P+ A+ R+   S I      P+     +I+ L+   
Sbjct: 646  LPSEVQEPPKGIVTARPDRRLPSDPIMAEIRSIRLSSIDSFAACPFMFRCSQIVGLEPPE 705

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK----ENLPPHID 853
                  D    GT  H +  ++ K        ++  L   I  S  E+        P + 
Sbjct: 706  RPGY--DGRLAGTAAHRLWRDVWKAYEVDRDADLASLACDIWPSVLEEVYRGLLYSPDLK 763

Query: 854  IIWRHLFHKI---SHSFLEHEEKIQSSIEKI-FVNIPAKMAIESIGIHLTGFADRIDLLK 909
                 L   I   +    E E+    ++    F+     + +E  G+  TG ADRIDLL 
Sbjct: 764  RRGDALLKDILKTADYLSELEDIGLKNMRVASFLEWELPV-LELDGVPFTGIADRIDLLD 822

Query: 910  SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969
             G V I DYK+G + K +        QL+  A +L+       +  +V    +I   Q+ 
Sbjct: 823  DGTVLIWDYKSGGSSKYD-----RSLQLACYARSLELSDSLPFEMSRVGGYGFI--CQRD 875

Query: 970  KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN--GEQPFISHLRLSE------KSNIQ 1021
            +      D+       LS +S   L   +    +      F ++  L        ++   
Sbjct: 876  QKVVGAADEDLREFMGLSPRSRVALDTRLKDASDVIEAAAFAANSGLFPPNYDNDQACRN 935

Query: 1022 SEYDHLARVAE 1032
              Y  L R  E
Sbjct: 936  CPYSGLCRRGE 946


>gi|325105547|ref|YP_004275201.1| ATP-dependent nuclease subunit B [Pedobacter saltans DSM 12145]
 gi|324974395|gb|ADY53379.1| ATP-dependent nuclease subunit B [Pedobacter saltans DSM 12145]
          Length = 986

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/467 (17%), Positives = 146/467 (31%), Gaps = 52/467 (11%)

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +I + +    V       + L ++G LESR LNF  ++L GLN+G+ PK T  N F+   
Sbjct: 524  LIQKTLQSIAVPLSGSPLNGLQVMGLLESRNLNFKHVVLLGLNDGIVPKTTIGNSFIPDS 583

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGT 725
            ++    L   E     +A+ F         +     SL + +     SR+L++L    G 
Sbjct: 584  LRRVYGLPVLENQDAISAYMFYRLIQRAEKVSVVYNSLTDESNSGEPSRFLKQLEYESG- 642

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                +     Q       K + T  +   +  K         RT S S +   I +P   
Sbjct: 643  ---WDFNYFHQEMNVEVEKSEATEIEKTDEIIKVLNDFSTGRRTLSASALTTYIANPIDF 699

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-------PEINHLMKQI 838
            +   I  +       +  +  D G++ H  + +       +N         E    +  +
Sbjct: 700  FFNYIAGIKEPEEVHEVVEANDLGSILHGTMEDFYNILKFENPNITRERIAEKRKDILTL 759

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLE-------HEEKIQSSIEKIFVNIPAKMA- 890
            I ++F K                 +  + +E       + ++  +    I +     +  
Sbjct: 760  IKANFNKVMYDNAERQTNFSGMQLVVLAIVEEYCNIILNYDEKCTPFTIIHMEEAMVVPY 819

Query: 891  ------IESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLID--------- 934
                       IH+ G  DR+DL   G   I DYKTG       + ++  +         
Sbjct: 820  TFTDANGNERTIHIKGIIDRVDLTGDGITRIVDYKTGSDKLSYHSIEESFNTHGKSLNKA 879

Query: 935  -PQLSLEAAALKAGSFSQI-----------DCRKVANLFYIRL-KQKFKIDCITNDKKKY 981
              Q        +     +            +   V    Y ++   K     +  +    
Sbjct: 880  LVQTLFYTYVFEQAKNLKFVEPNLYVLKIMNKEGVLFQSYRKVDDGKGGTKRMKLNLSNE 939

Query: 982  SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
               E  E  L  L + +  L +   PF             S Y  L 
Sbjct: 940  FLMEEKEIFLNELNKKLAELFDKNVPFRVSENPLNYQ--YSRYTTLM 984



 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/370 (12%), Positives = 96/370 (25%), Gaps = 57/370 (15%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
           PF +E+   L+                 L    I    KR    L+    EI   K    
Sbjct: 3   PFLKEVAEDLVAQFG-----------DKLQHCAIVFNNKRPSAYLQKYLAEIYQ-KPFWS 50

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
           P   ++ ++  +     +   Y          +   L RL      K    + D+    P
Sbjct: 51  PTFFTIQELFAKSTHYKIADFY---------SQFFTLYRLYNQLLIKENLGLLDMAQFFP 101

Query: 136 -----LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL-------- 182
                LS      N +  A  L   ++ I    ++++ L   +++    +W         
Sbjct: 102 IAKIILSDFSQIDNDLVDANKLYHELEDIALINQQFDFLSPEQHQFLSQFWTSYSEGKHK 161

Query: 183 -------LAADFLKIASKYWTERLVELNASSPVGYQIALMR---AEAEHLMKGTKGPIII 232
                       + +    + E L +    +       L        + L +  +G +I 
Sbjct: 162 RQQENFIKMWRRMPVLYHAFHEDLAKQKLQTMGRAYRNLAEGKQDNPDFLQEFQEGKLIF 221

Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
            G      A +++        + A      D +                           
Sbjct: 222 VGFNALTKAESKVFKRWQEQ-DLAKFYFDTDAYYLNDPLQEAGLFLRKNIDQI------- 273

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
                 L++ LD +R  +K      +    +   +    L     D            + 
Sbjct: 274 -----GLINALDSQRTFIKERPKQVDVYKVQGHNVQAKILNDIVRDEYAQLAANKNYGDT 328

Query: 353 QKCFSDVALI 362
               +D +L+
Sbjct: 329 AIVLADESLL 338


>gi|149006189|ref|ZP_01829901.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP18-BS74]
 gi|147761966|gb|EDK68928.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP18-BS74]
 gi|332075085|gb|EGI85556.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae GA17545]
          Length = 1091

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 252/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQTEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752
                 +  +G    D                                 +R +       
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715

Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             + P                       Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLTKDTLQALYPAKQEFYLSTSGLTEFYLNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPIQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|81299965|ref|YP_400173.1| hypothetical protein Synpcc7942_1156 [Synechococcus elongatus PCC
            7942]
 gi|81168846|gb|ABB57186.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 865

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 92/595 (15%), Positives = 187/595 (31%), Gaps = 64/595 (10%)

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP--LVTYKTNKNST 544
             L   + D +     +   P      S              L+   P  L  ++T+  + 
Sbjct: 288  RLGRWLEDLLTAIAADFDYPSGIRVFSPSFCAALPDGRQRQLRRDRPQNLAAWQTSLATE 347

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI--IETGSCIKANA 602
                 ++      V  L+        +     + ++   L+ L  ++  +   +      
Sbjct: 348  FSPWPLAATRTEWVGQLRQWLQQLGLRQGLRRWPQDLVALNRLQQQLKNLAEPASETLTR 407

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             +W     +LI   +  P       + +    +        +   GLNEGVWP   A + 
Sbjct: 408  QQWCQEFEQLIR-ISRTPVQPGRGGVQLDRPEQIVGAQIGHVFYLGLNEGVWPAPLASSS 466

Query: 663  FLSRVMQSDLN-----LKTAEKYIGQAAHDFEMANGTRHLI-YTRSLRENNIPTIASRWL 716
             +    +  L      L TA   + QA   +  A        ++   + +N   + S +L
Sbjct: 467  LIDYSDRRQLQRLGLPLPTAASLVQQAKVQWIGALAATQTAQFSWVRQHDNREQLPSAYL 526

Query: 717  QRLLVLGGTDFFDNLKKRGQ----CYLDWTRKLDYTTKQPHYKRPKPFPPLEA------- 765
            +++ +        +     +      L  +  +D      H  + +              
Sbjct: 527  EQMGLRSQITPAADSPHSPEEYRRRLLAQSTLVDDGDPIAHSAQQRSQQVQARLQGEAVW 586

Query: 766  ----------QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                        R  S + I QL   PY   A ++L L        DPD    GTL H  
Sbjct: 587  NGQLADSISIPTRPLSVTGIIQLGQCPYRWAASKLLNLQTDSERSDDPDAAMTGTLLHKA 646

Query: 816  ITELIKKRINKNTPEINHLMK--QIIDSHFEKENLPPHIDIIWRHLFHK-------ISHS 866
            +  L  +   +  P+   L+   +   +H  K+      D+     +         +   
Sbjct: 647  LELLTPQLKTETLPDREILLAIVETAAAHLAKQRPREG-DLRQHPRWTAFQLSYVNLLER 705

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
             L          E I V    +   + + +   G  DRID   +G +++ DYK G   +K
Sbjct: 706  LLRSPNFRSPDSEIIAVEQSFEGQWQGLPV--RGTIDRIDRTSAG-LELIDYKLGSTTQK 762

Query: 927  ---ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
                  +  +D QL+L     + G+ +    + VA + Y+ +++         +      
Sbjct: 763  VWDTDQKLKLDLQLALYQ---EVGAAAIAPDQPVAQVRYLHMRKAEASQPKPAE------ 813

Query: 984  DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
                      L ++   L+   +     +R  +      ++  L R +E ++E D
Sbjct: 814  -------ATELEQLAARLKQAFEGGHFPIRPHDSYCRYCDFAGLCRHSELKQEVD 861


>gi|332523689|ref|ZP_08399941.1| ATP-dependent nuclease subunit B [Streptococcus porcinus str.
            Jelinkova 176]
 gi|332314953|gb|EGJ27938.1| ATP-dependent nuclease subunit B [Streptococcus porcinus str.
            Jelinkova 176]
          Length = 1078

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 116/953 (12%), Positives = 265/953 (27%), Gaps = 124/953 (13%)

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
            +     L D+   ++       DL    +E          DF+ I        +      
Sbjct: 112  LAFILQLIDLYKELKAANIAVTDLEMEDSE-------KKNDFISIFLAVEDLMVNYQLEE 164

Query: 206  SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
            + V    + + A  +   + ++  +I+ G T      A L++ +    +  ++   L   
Sbjct: 165  TSVLDYFSQVVASGQIDEQLSQTVLIVDGFTRFSTEEANLVAQLDTKCHQVVIGTYLSQK 224

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
              +  +        +I        T+                        V  +     +
Sbjct: 225  AYSKSFTEGNIYQASIDFFRELSQTYH-----------------------VKAQYTKSQI 261

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
            +  +SF         + D  E++     +  +   + ++ N+++E   +A ++R  L E 
Sbjct: 262  IYPESFRNLTKLLEEHFDFSESESQLSSQDKNSFQIWQSLNQKDEIEHVAKSIRQKLYEG 321

Query: 386  KK--KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
             +     ++  D    +    +L  ++ I         +S       + +L         
Sbjct: 322  YRYKDILVLLGDLESYQLQICQLFDKYEIPYYFGKAEAMSHHPLVQFIDALERIYRYNWR 381

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
               I +L+K  L                 +L          DI   +           ++
Sbjct: 382  NEDILSLLKTGLFGHFED----------FDLDQFEAYVQFADINGSRKFAKTFFVNPLDS 431

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                 +       D +    L + I   +  L   K    ++  N  ++   ++ +    
Sbjct: 432  RERRKF-------DLDAINRLREVIYSPLEALYRQKQQTGASFMNRLLTFLNQVELPTKL 484

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                    +       E  K  +S+  +          N      +I   +     +   
Sbjct: 485  EQLSYAQNENEQEKDLEVWKVFTSILEQFYHIFKDELINLEHAFKLIKTGMQTAHYRAVP 544

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                 + I      +  +   +   G+    +PK T K   ++   ++  N K       
Sbjct: 545  ATLDVVTIKSYDLVQPHSKAIVYAIGMTSAHFPKVTFKKSLINDQERALTNQKLPSFQRF 604

Query: 683  QAA--------HDFEMAN---GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN- 730
            + A        H   ++      + L+ +   + N +    S ++  LL  G        
Sbjct: 605  EVASHETTKKNHFMALSLFNSANQKLVLSVPTQLNEVSVEISPYISLLLAFGIPLVEKGK 664

Query: 731  ------------------------------LKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
                                            +    +    R L    K+     P+  
Sbjct: 665  SRFSALESDIGNYKSLLSQVIELNTSQMELSPEEENFWTVMLRYLKGRLKKEDLVFPQTK 724

Query: 761  ---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                              E +P   S S +    ++ Y  + + +L L         PD 
Sbjct: 725  KHLQTKTLSKEVIQTRFPEEKPIHLSNSALTVFYDNQYKYFLQYVLGLQETESIH--PDA 782

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKI 863
               GT  H +   ++    +           +    ++ F+             HL  +I
Sbjct: 783  RQHGTYLHRVFERVMADASDLAFDNKVKRAIKQTNQEASFKYFYQEDAQGRYSLHLLEEI 842

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD- 922
            + +  +  +  Q+ +  +      ++ I+   + + G  DRID L    V I DYK+   
Sbjct: 843  AKATADIFKAHQN-VHVLAQEEKFQLPIQDK-LIINGTIDRIDQLADQSVGIVDYKSSAN 900

Query: 923  NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
                      ++ QL    +ALK   +   +   +    Y+ +++         +     
Sbjct: 901  VFDLSLFFNGLNSQLPTYLSALKR-RYQNHNP--IFGAMYLHMQEPKLDLATYQELDSK- 956

Query: 983  ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS--EYDHLARVAEW 1033
               L +   K L     +    E+  ++       +N  +  E   L    EW
Sbjct: 957  ---LLKDHYKELT-YKGIFMESEKEHLASGAYHITNNTFTEEEVALLLAYNEW 1005


>gi|254510778|ref|ZP_05122845.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11]
 gi|221534489|gb|EEE37477.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11]
          Length = 910

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 111/995 (11%), Positives = 266/995 (26%), Gaps = 108/995 (10%)

Query: 49   IYVPTKRAIQELRSEFIEITGKKSTIL-PIIKSLGDV--VEEKFTADLLLSYNLNPPVSN 105
            +   T++A +EL +      G    +  P+  ++G +  +  K   +      +    + 
Sbjct: 2    VSTFTEKAAKELVTRITSRLGGIENLGNPLDLTVGTLHSIFLKLLEEFRAYTEIQKNYTV 61

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            + +  +   L            +D+           P ++   A  L   ++ I  E   
Sbjct: 62   LDQFDQQYFLFQQASE-----FRDIQGIEDALGLRGPQSSWRFAGALMTWLNKISEEGIT 116

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEH 221
             E L A    +              A + +   L E N       Q+ ++R         
Sbjct: 117  AEQLLASDTPEMSAS--------GEAYQTYQRLLSEYNYLDFSTIQVEMLRLLDNPDVCK 168

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             ++G    ++I     +     +++  +A       V+   D       +   + ++   
Sbjct: 169  QIQGRFDYLMIDEYQDTNTIQEKIVLKLAEGHRNLCVV--GDDDQALYRFRGASIRNILE 226

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK-SFLPPDTSDMR 340
              +        Q  L K         +   R    ++            +  P   +   
Sbjct: 227  FPTRFPAGECKQVRLTKNYRSEPPIIDFYNRWMKTTDWAEDDKSFRFDKTIEPASGTATA 286

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA-DRNLA 399
            +  + +    +    ++D  L+   + R + I         + +  + + L  +      
Sbjct: 287  HPSVFKVAGDDRADNWADETLVFLQSLRSQGI---------IKDWNQVAFLFRSVRNPKV 337

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
                 +L   GI I               ++               I  L+        +
Sbjct: 338  VAFANDLEAAGIPIYAPRSNMFFERTEVRLM---------------IGALL---FLFPQY 379

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                 +R    L++ A      +  I  LK           ++  +  W +  ++    L
Sbjct: 380  GSIRQTREGMNLQVWAFYDACLAEFINHLK---------SGDDPQIKAWAAGKAKNHLSL 430

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
            +            P      +           D          +       KL  L  + 
Sbjct: 431  SE-------NTNYPFSGLFYDLMQFPTFSRFLDEGIAHSGVRDSRPARNLSKLSRLLNKY 483

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
            E      +          +      +  +    I+    + +   S  +  +   +S+ L
Sbjct: 484  EYLYNVIVIRPDRLERDILGLFNFFFRFLWDGGIEEYEDESEYAPSGCVSFMTIHQSKGL 543

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
             F  +I+G L+     + T     L +        +  E        DF     T    +
Sbjct: 544  EFPIVIVGSLDAVPRKQYTDMEVMLEQEFG---GREPFEPMDRIKTFDFWRLFYT---AF 597

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
            +R+     +    +    R      + +F  +    + + D        T  PH      
Sbjct: 598  SRAQNMLVLTCQENTPSGRGQRHVPSAYFRPVYDALKPWRDL-------TFDPHTIDLAE 650

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
               ++ +      S++      P      + L    +       +    GTL H  I ++
Sbjct: 651  VKEVDIKQSYSFTSDVLVFEGCPQQYRLLKDLNFAPVRT-----NAILFGTLVHQTIEDI 705

Query: 820  IKK-RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW--RHLFHKISHSFLEHEEKIQS 876
             K     + T      +    D ++        + +      +  +   S+++ E     
Sbjct: 706  HKAVLRGEETKVTTDQITSWFDLNYANLTKKERVYLAEPVLKIAKRHVTSYVDRERAHWH 765

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK---ETAQKLI 933
             +    V     +++      LTG  D +     G  +I D+K+   P            
Sbjct: 766  RLRDAEVE----LSLLKEDYILTGTVDLV-QTDDGSYEIIDFKSEKKPDLIDEADRLSRY 820

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
              QL + A  L+          +V+ +      ++     +T  ++    +    K    
Sbjct: 821  RRQLQIYAHLLEEK-----REVEVSRMTLYYTGEEAGNPRVTFPRETTDVEGTIAKV--- 872

Query: 994  LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
               ++  +              E+     ++    
Sbjct: 873  -DSVIHDIVEKNYGLSERP---ERLCKNCDFQAFC 903


>gi|15901016|ref|NP_345620.1| exonuclease RexB [Streptococcus pneumoniae TIGR4]
 gi|15903083|ref|NP_358633.1| second subunit of major exonuclease [Streptococcus pneumoniae R6]
 gi|81449676|sp|Q8DPR7|ADDB_STRR6 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|81531935|sp|Q97QQ0|ADDB_STRPN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|251764802|sp|Q04KF9|ADDB_STRP2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|14972628|gb|AAK75260.1| exonuclease RexB [Streptococcus pneumoniae TIGR4]
 gi|15458658|gb|AAK99843.1| Second subunit of major exonuclease [Streptococcus pneumoniae R6]
          Length = 1091

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 253/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQESQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +           S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAEKLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748
                 +  +G                + + ++                       LD  
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715

Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             +       P                 Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|289705136|ref|ZP_06501540.1| ATP-dependent DNA helicase (UvrD/REP) family protein [Micrococcus
            luteus SK58]
 gi|289558164|gb|EFD51451.1| ATP-dependent DNA helicase (UvrD/REP) family protein [Micrococcus
            luteus SK58]
          Length = 1146

 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 115/1012 (11%), Positives = 251/1012 (24%), Gaps = 102/1012 (10%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT---GKKSTILPIIKSLG 82
            +            L+P  L    +  P++ A   LR          G+ +  +  +++  
Sbjct: 66   VAVEYAARRIEAGLDPESL---LLLAPSRDAAARLRDALTRRLAAAGRGTRAVTPVRTWS 122

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP-ESPLSLPIS 141
                +               +    RLL  A    +    L      L       +    
Sbjct: 123  SYAFDLLRR--ARVTGPLRHLEVAPRLLTGAEQDTVIAELLEGYAAGLAAAPDWPADVAP 180

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
               A    + + +++D +     +   L  L        W  AA  L+         + E
Sbjct: 181  AVEARGFRREVRELVDRMSELGLEPGRLQELGTAHGRPEWEAAAVLLQDYRDRIDLGMAE 240

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
              A    G   A +R   E   +  +                 ++  V +       +  
Sbjct: 241  --AFDAAGLLSAAVRVLTERHPEDPERDAAAQAFVAEERDRLAVL-VVEDLHEATPAVHD 297

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            L   +       +T                       +LD   +         +    + 
Sbjct: 298  LLSVLGRGRDVLLTASPDTTVEGFRGARPDLLARYPGVLDPDPVPGAAPLASPDGRVRVL 357

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPN------IQKCFSDVALIEADNEREEAISIA 375
             R   +            R        +               V          E   + 
Sbjct: 358  TRGHRMRAEVQDAYLRVARRVRQRTAGVERTRTETVPADGDGAVRAHVVPTRAHEDQLVL 417

Query: 376  IALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILT 431
              +     E+     +  ++    +    +   L   G+ +    AG+ L      + L 
Sbjct: 418  ERVLRVHHEDGVPLDRILVVARSGSRVAALARHLEAEGVPVLRDAAGLVLKEEPAVAPLL 477

Query: 432  SLLNAIFKLN-DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            +LL+A   L  D  A    V  P    G        A         +    +      + 
Sbjct: 478  TLLDAAGALAEDPEAGVEDVLDPDEVVGLLTGRYGMASALHVRRLRQDLLAAERGRGGRR 537

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                 +A    +  +   +       + +  +L D +     P  + +T   +       
Sbjct: 538  TSDALLAAALLDPSLAGPEHERHRALRRVHWMLRDGLEAARAPSASPETVLWALWSASGR 597

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
            ++  +           D           +    L  +  + ++      +     + + +
Sbjct: 598  AERWRSLALRPAEHANDRRESRRADADLDAVVALFKVAERFVDQFPG-ASPESFAVYMES 656

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
            + +  +T+  + E    + +     +    +DT+I+ GL EGVWP    +   L      
Sbjct: 657  QDLPVDTLARRAESGDAVHVRTPAAAAGQEWDTVIVVGLQEGVWPNTRLRGQLLGATDLV 716

Query: 671  DLNLKTAE--------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPT------ 710
            DL    A+              +          ++   R ++ T     +  P+      
Sbjct: 717  DLVTLPADAPWPTDHRTRLREVRQDELRMLAAAVSRARRQVVVTAVRAPDEGPSDFLDLV 776

Query: 711  ----------IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ--------- 751
                        +   +RL  +        L  R +  L+   + D              
Sbjct: 777  DPPERLPAEARDAAGARRLTAVPDPITAPALVGRLRRVLEAGDEADAADGVTPRAAAAAG 836

Query: 752  --------------------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                                            E +    S S ++  + +P       + 
Sbjct: 837  LAVLAEDGVTVADPRRWWGLLPLSTEAALVDPEREVVALSPSRVETALRNPLDWVLYHV- 895

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
                             GTL H++     +        E+   + ++             
Sbjct: 896  -----GANAGGTLAQSVGTLVHSVAEHHPEGVPEDVRAELERRLPELG-------LPEGW 943

Query: 852  IDIIWRHLFHKISHSFLE-HEEKIQSSIEKIFVNIPA--KMAIESIGIHLTGFADRIDLL 908
            I  I       +  +++        +    +   +     +      + +TG  DR++  
Sbjct: 944  ITEIEHDRARGLVDAYIGYWSIARAAGRRPVAQEVRLLADLTWGGTTVRITGVVDRLEAD 1003

Query: 909  KSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
              G   I D KTG   P      +   PQL+    A++AG   Q+      +
Sbjct: 1004 AQGRPFIADLKTGRSAPTGAEMAR--QPQLAAYQVAVRAGGLEQVRDDPATD 1053


>gi|169833300|ref|YP_001694550.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae
           Hungary19A-6]
 gi|251764623|sp|B1IBR5|ADDB_STRPI RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|168995802|gb|ACA36414.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 1091

 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 119/932 (12%), Positives = 252/932 (27%), Gaps = 147/932 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L + L ++   +   +  + DL  L +E             +  + Y  +      
Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +       L+ A     +      I  +I G T       R++  +     G  ++ G
Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                           S    +S  +     Q S+ K L  L  K            +  
Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            ++     SF         + D  E  +   +K   ++ +     ++EE   +A ++R  
Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L E      K    L+    +    +K    ++ I   +     ++    +  + S+L  
Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  DI   +  +    
Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555
                       +S   + + E   +L   IL  +  L   +     +     S+     
Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                LQ++              E  K    +  +     +  + +  +++ ++   +  
Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQTEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       T+ +        L  D +   GL +   PK +     L+   + +LN  
Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595

Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           T E      A       + + M +      + L  +     N   +  S +LQ L+  G 
Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655

Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752
                 +  +G    D                                 +R +       
Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715

Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             + P                       Q    S S + +   + Y+ + R +L L    
Sbjct: 716 GLENPAIPTSPSSKTLTKDTLQALYPAKQEFYLSTSGLTEFYLNEYSYFLRYVLGLQ--E 773

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855
             +  PD    G   H I    ++     +  +      Q    +  FE           
Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908
            + +   ++ +   H  +   +IE I             + ++    + + G  DRID L
Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892

Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +G + + DYK+         Q       ++ QL    AALK                Y
Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943

Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + + +  +             +       + L
Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975


>gi|118618002|ref|YP_906334.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99]
 gi|118570112|gb|ABL04863.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99]
          Length = 1101

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 131/1082 (12%), Positives = 260/1082 (24%), Gaps = 181/1082 (16%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57
            +++  V    P          A    T+     +   N       V     T++A     
Sbjct: 21   DEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLL 80

Query: 58   QELRSEFIEITG-------KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL 110
            + +RS    + G        ++   P + +        F   LL  + L  P+    RLL
Sbjct: 81   RRVRSRLARLAGTTVGVAVGEAAGAPTVST-----YHAFAGSLLRDHGLLLPIEPDTRLL 135

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
                L  +    +     +L   +  +     A  + L   LA+ +           +L 
Sbjct: 136  SETELWQLAFEVVNGYRGELC--TQKTPAAVTATVLRLWGQLAEHLVDTRQLRDTHIELE 193

Query: 171  ALKNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIAL 214
             L +                             L        ER+             A 
Sbjct: 194  RLVHALPAGPNQRDSGPNQWLLRMLVTQTERAELVPLLDALHERMRAAKVMDFGMQMAAA 253

Query: 215  MRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIP 267
             R      +    ++     +++     +  +    +S +      +G  +    D    
Sbjct: 254  ARLAATCPQVGGELRSRYRVVLLDEYQDTGHSQRIALSALFGGGVDDGLALTAVGDPIQS 313

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               W   +  +    S++   S      + +L          +     +S E   RS+ +
Sbjct: 314  IYGWRGASATNLPRFSTDFALSDGAPAPVLELRTSWRNPPRALHLANAISAEPRRRSVAV 373

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
                  PD         L   +   +   +D   ++   +R  A  ++            
Sbjct: 374  HALRSRPDAPAGTVRCALLADVQAERDWIAD--QLQGHYQRAAADGVS----------PP 421

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
             +A++      A  +   L   GI +++     L +    + L ++L  +       A  
Sbjct: 422  TAAVLVRRNADAAPIADALVARGIPVEVVGLAGLLSIPEVADLVAMLRLVGDPTAGAAAM 481

Query: 448  TLVKHPLAKFGFPEKYLS-RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
             ++  P  + G  +     R   AL      G   S   +   +      A   +    P
Sbjct: 482  RVLTGPRWRLGGSDVAALWRRAVALVGGPQVGASVSPGAVAAAAGPDTDTACLADAICDP 541

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK--------------NSTCGNLSISD 552
                  S    E    L   +      L  +  +                +         
Sbjct: 542  GPADWYSSAGYERIGALAAELNALRGHLGHWLPDLVAEVRRVLGLDCDVRAAATASGAWA 601

Query: 553  WTKLTVTCLQNVCLDEHRKL----PNLWFEEEGKTLSSLFSKIIETGSCIK--------- 599
              +        V     R        L  +     L +      E  + +          
Sbjct: 602  GAEHLDAFADVVADYAERTAISAGSALSTKASVDGLLAYLDVAAEVENGLPPAQLTVARD 661

Query: 600  ---------ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
                     A  +EW  +    +          +SS L   G L   L      +     
Sbjct: 662  GVQVLTVHAAKGLEWQVVAVAHLSAGVFPSTASRSSWLTDPGELPPLLRGDRASVGALGI 721

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENN 707
              +          LS  + +        +   +    +         +            
Sbjct: 722  PVLDTSAVTNRKQLSDTISAHREQLDQRRVDEERRLLYVGVTRAEDTVLVSGHHWGATGL 781

Query: 708  IPTIASRWL-------QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP--- 757
             P   S +L       +R    G      +   R     +    LD   +      P   
Sbjct: 782  KPRGPSDFLCELKDIIERSAAAGDPCGTVDQWDRAPVAGERNPLLDDVVEAVWPTDPLAT 841

Query: 758  --------------------------------------------------KPFPPLEAQP 767
                                                                 PP  A P
Sbjct: 842  RRGDVERGARLVAEAISADAGVEAPAGGAAVADIEGWTADVDALLAERARAVGPPTRALP 901

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
               S S + +L  DP     R + +L   P           G +FH  + +     +  +
Sbjct: 902  NQLSVSGLVELARDPVGARQRLVHRLPTRPDPHAQL-----GNIFHTWVQQFYGAELLFD 956

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
              ++       +                       +  +F       +     I V +P 
Sbjct: 957  LGDLPGAADSDVGQV---------------EDLAPLQEAFAGSPWAAR---TPIAVEVPF 998

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE--AAALK 945
            +M +      + G  D +     G   + D+KTG+ P+   A +    QL++   A A  
Sbjct: 999  EMPVGDT--VVRGRIDAVFEDPDGGATVVDWKTGEPPRGPEAMRQAAVQLAVYRMAWAAL 1056

Query: 946  AG 947
             G
Sbjct: 1057 RG 1058


>gi|227497413|ref|ZP_03927645.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833089|gb|EEH65472.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434]
          Length = 1156

 Score =  148 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 126/1083 (11%), Positives = 290/1083 (26%), Gaps = 165/1083 (15%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
               I  PT+   ++LR    ++   + +    +++ G       +  L    +  P    
Sbjct: 68   DALILAPTRGRAEQLRERAAQLLAGQGSGAVRVRTPGSYAFMVLSTSLSSRPDPLP---- 123

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                   A ++L+   +   + + L+P     LP     +      L +++         
Sbjct: 124  -------APVLLVGAEEDAALAQMLHPAHWQPLPPEAVTSRAFRSELRNLLARAGELGVG 176

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWT---ERLVELNASSPVGYQIALMRAEAEH- 221
              +L  L  E     W  A   L+           R  +         Q     A     
Sbjct: 177  AAELAELAEELDVEIWRQAVPLLRAWDAQGRPSSSRRSQTRKMDSARIQDRAREALERWN 236

Query: 222  -----LMKGTKGPIIIAGSTGSIPATARLMSTVAN---HPNGAIVLPGLDCHIPTAIWNT 273
                 +       +I+        AT+RL++ +A      + + V+   D  +    +  
Sbjct: 237  ADGVQVPPPVPDLVIVDDYQDCTAATSRLLARLARPDSSGHRSQVVVLGDPDVAVETFRG 296

Query: 274  ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
             T              +    +   L        E V+   + ++ +      + +    
Sbjct: 297  GTPSLL----VEAEDRSGLAATRMTLRTRYRGGAELVRVWEDQADRVPVTGSPVHRHPRL 352

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSA 390
             +          E       +  + V  I A +  +E   +A  +R     +     + A
Sbjct: 353  AEQEVSGGCQPSETCTVVAGERTAAVTAIVASSACQETAHVARVMRSEHVLHGTAWDQMA 412

Query: 391  LITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIF--------KLN 441
            +I      A+ V  EL R G+ +  S+  + L     ++ +T +  +             
Sbjct: 413  VIVRSAGAAQAVARELRRRGVPLSASSPAVLLRAEPAAAAVTDVARSALAGELGQDDAPA 472

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
               A+  L+  PL      +    R +          ++          L    +   + 
Sbjct: 473  QREAVLRLLTSPLIGLSVLDLRRLRRRLRTAFPQQEADEVLVRTACSLQLARALLEQLRQ 532

Query: 502  NTHVPHWQ-----SRLSEEDKELAVLLVDHILQCITPLVTYK-TNKNSTCGNLSISDWTK 555
            +  V   +     +R+  E + +     D   Q        +   +         S   +
Sbjct: 533  DPLVSQARSLERAARIVTEVRAVVQACHDARPQGDEGTGQGRVDAEELLWAAWQASGCAE 592

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE---TGSCIKANAIEWIDIITRL 612
                                   E    + +   K  E        +  A+   ++   +
Sbjct: 593  QWRQVSLGGDTGSGEDGVLAEAAEHDLDVVTALFKRAEVWAERHPGQDAAVFLSELAGEV 652

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF--------- 663
            +  ++V P   + + + +L    +    ++ + + G+N   WP    ++           
Sbjct: 653  LPSDSVAPTGVRPAGVSVLTPAAAAGRQWEVVAVTGVNRDQWPDLRLRDSLTRAGLLVEA 712

Query: 664  LSRVMQSDLNLKTAEKYIGQAAH----------DFEMANGTRHLIYTRS----------- 702
            ++  +  +   + + +    +A                      +   +           
Sbjct: 713  VTDRLPREPGGRRSAQMDRVSARAQVRADERRMLLAALTRATRRLVVTACQDEEHAPSGF 772

Query: 703  -----------LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD---------WT 742
                       + + +   + S  +  L + G          RG                
Sbjct: 773  FLEVARSAGVQVSDEDGQVLTSPDVGELTLRGLVAELRRATVRGHLPTATEQERQQGRQA 832

Query: 743  RKLDYTTKQPHYKRPKPFPPL------------EAQPRTYSFSEIKQLINDPYAVYARRI 790
              L  +  Q    +  P                + +    S S++  L   P   + +R 
Sbjct: 833  AALLASVAQAGIGQADPSSWPHGVATSATALVADGERVRVSPSDVDNLSTCPLRWFLQRH 892

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
                     ++       G + H I     ++ +          + +++++   + + P 
Sbjct: 893  GGDTGTSGQQR------LGNVVHAIAERAQREGLRG------ESLHELLEAQMPELSDPG 940

Query: 851  H-IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI--------------- 894
              I+ + R   H I      +   +      + V     + ++                 
Sbjct: 941  TWIEQLARQRAHDIIDRLDSYLASVPGQ---VLVEKRIDVELDLPLPPSEDTDDEPGRDG 997

Query: 895  --GIHLTGFADRI----------------DLLKSG---FVDITDYKTGDNPKKETAQKLI 933
              G+ L G  DRI                D L +G    V + D KTG  P  + A+   
Sbjct: 998  VIGVRLAGRIDRIEMVEALDEMQSGTQELDQLPAGQGRRVRVMDLKTGRRPAGDVARNA- 1056

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
              QL+    AL+A  +       VA         + +I             +  E     
Sbjct: 1057 --QLATYRMALEALGYEVSGAGLVALGESADRNGQTRIYPPGAALAASPDAQTGEDWASQ 1114

Query: 994  LIE 996
            L+ 
Sbjct: 1115 LVA 1117


>gi|326317370|ref|YP_004235042.1| exonuclease-like protein [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374206|gb|ADX46475.1| exonuclease-like protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 913

 Score =  148 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 111/817 (13%), Positives = 215/817 (26%), Gaps = 72/817 (8%)

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             L+            +P  D          +   +    +     +         L    
Sbjct: 144  PLLDAACQLAPAVAAVPPADREAWAGRVRPLLPPAAEGAALRYESAVARIALEWALATRH 203

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI-----------LENKIPNI 352
                    R+   +  +                +                       P  
Sbjct: 204  ATDVLFEPRVRASAPVLVVLDGFQPDPLAHALCALWGADRACVLPLCPAPGAGGPDGPRA 263

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
                 DVAL  A +  +EA   A  +   + E +   AL   DR L RR+   L   G+ 
Sbjct: 264  AFAAGDVALHAAADAEDEAQRAAACVLRHVAEGRTPVALAAIDRALTRRISALLAGRGVG 323

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            +    G  LSTT   + + + L A        A+   +KH  A      +   R      
Sbjct: 324  VHDENGWTLSTTRAGAQVMAALRACMAHASGDAVLDWLKHVPAADAEALRQAERWLRRTG 383

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
            +                     R A            +   +     A+     +++   
Sbjct: 384  MGDWP--------------AAVRSAGLAAGPAQDTTGAEGLDVPGPCALEGWRTLVRRTE 429

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
                         G L+            + +  D            +   L+       
Sbjct: 430  AWRAAMQAPRDLPGWLAALRALLQATGQRERLQEDAAGLRVLAELRLD---LAQEGEWRG 486

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPK--IEKSSTLFILGTLESRLLNFDTLILGGLN 650
               S       E++     +++    +P+   + +    ++   +     F  L+  G +
Sbjct: 487  LDVSGRPMALAEFVHWADEVLEAGRFRPEFGGDGTPDAVVVPLPQMLARPFAALVAAGCD 546

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRENNIP 709
            E             +R  +  L L   +         +  A    H+ +  R   E   P
Sbjct: 547  EKRLQAAPEPPGAWTREQREILGLPMRKDLEAAQRAAWAHALSVGHVDVLWRIGDEGGEP 606

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
             +AS  +  L   GG     + ++              T       RP P          
Sbjct: 607  LLASPLVLALQAEGGRRAGIDPRE------------LRTVAPSPVPRPLPRGD-ALPLAR 653

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---K 826
             S S    L + PY  +A R+L L        + D+ D G   H ++    +   +   +
Sbjct: 654  VSSSAYSDLRHCPYRFFALRLLGLQESDELGAEVDKRDFGNWLHAVLQRFHEGLRDAPVE 713

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
            +T     L+    ++    + L     + +   +  +   +L      ++   + F    
Sbjct: 714  DTATRRQLLDAAAEATTRAQRLSAGEFLPFAAGWPALREGYLRWLAGHEAGGAR-FREAE 772

Query: 887  AKMAIESIGIHLTGFADRIDLLKSG------FVDITDYKT-GDNPKKETAQKL-IDPQLS 938
             +       + L G  DR+D ++         V + DYKT G++  +        D QL+
Sbjct: 773  RRCVQPLGPLELIGTLDRVDAVRGQAPGEPPTVMVIDYKTEGESATRRRIAAGTEDTQLA 832

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
              AA L                 Y+ + ++ +      +      D+L E  L +   I 
Sbjct: 833  FYAALL---------GDDTLRALYVNVGERGETRSFEQEDVVALRDQLVEGLLHDFARIA 883

Query: 999  TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWRE 1035
                       +                L R   W +
Sbjct: 884  EGAPLPALGEGA-------VCDYCAARGLCRKDFWSD 913


>gi|293607026|ref|ZP_06689370.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553]
 gi|292814623|gb|EFF73760.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553]
          Length = 889

 Score =  148 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 92/854 (10%), Positives = 213/854 (24%), Gaps = 48/854 (5%)

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
            L              L R              +   +   +PA              AI 
Sbjct: 41   LELAGLLRQERQVSELPRILPLSAWLAESANELAFEADDDVPAYRLDSFATQLVWTEAIR 100

Query: 259  LPGLDCHIPT--AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                +  +           +    +   +    +       +      ++        + 
Sbjct: 101  AEEAERVLLDASQAARLSMDADQLMDEWDLHVPSGADTDEYRGFARWRVRYRQTLAGIDA 160

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
             +   G + V+         +           +         +   EA   R        
Sbjct: 161  EDANQGYARVLRALEEGRLPTPAHLVLAGFTDVSPRFHRL--LRAFEAQGTRVSQWRDEQ 218

Query: 377  ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             +       +            A               I +    + +  +  + S   A
Sbjct: 219  RIETVARRFEAADEGAEWRAAAAWAAGQLQAHPHGRFAIVSPQLEAESPFARRILSQALA 278

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                         V  PL ++      L+  +   E    +G         L +      
Sbjct: 279  GRDGAPAHVFNVAVGRPLNEWPMARAALAWLRALAECAGGKGCGVDVLGAALLAGHCAGD 338

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLL---VDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              ++        + R               +  I                     +   W
Sbjct: 339  VRERARLAAIDARWRRQAIQHVSPHDWKKLLADIPTLAQAWNQAFEIWTQGGRQATCDVW 398

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                   L  +       L ++ ++  G    +L S      +  +   +  ++++  + 
Sbjct: 399  MLRMKAALTALGFPGEGVLDSVAYQVMGALGDALGSFSALAPAAGRLGGVAAVNLLQSVA 458

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               + +P+ + ++ L +LG LE+    +D + L GL + V P +   NP L   +     
Sbjct: 459  RSASFQPQRDPTARLDVLGLLEAEGGYWDGVWLLGLTDDVLPASPKPNPLLPLAVLRQAK 518

Query: 674  LK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
                T E+    A   +         +I + S  +       S  +              
Sbjct: 519  APRATPEREREWAEGMYAALCRCAPDIIVSHSHMDGERELRPSPLIAG------------ 566

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
                   +            Q   +  +  P             +     +P   + R  
Sbjct: 567  --TALTDWTPPVADCVAALPQESLEDNQGPPLAPGNRGGGGLDVLDTQARNPLWAFVRHR 624

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-------EINHLMKQIIDSHF 843
            L    +  +        RG   H  +  +     ++ T         +  L++Q +    
Sbjct: 625  LGGRELSPYADSATVNVRGQFLHKALELVWGMMPDQETLHEVMATGRLAALLEQAVAQAA 684

Query: 844  EKE--NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
            ++E  +  P +  +       +  ++L+ E   +       V    +    ++ + L   
Sbjct: 685  DEELKDYAPALKALECQRARAVLAAWLDTE-ARRLPFAVAQVEKNHQWQRGALNLKL--R 741

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKK----ETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
             DRID L  G   I DYKTG  P K     +  + ++ QL   A+ L   +  ++    +
Sbjct: 742  LDRIDSLADGRNVIIDYKTGVAPAKPEPDWSRSRPVNVQLPFYASVLADAAGGEVAGLVL 801

Query: 958  ANLFYIRLKQKFKIDCITNDKKKYSADE-------LSEKSLKNLIEIVTLLQNG-EQPFI 1009
            A +   ++  +   D          A +          +  +     +  L +       
Sbjct: 802  AQIHARQVAAQGLADEDLGVPGVTLAADSKFFQGLSWPEIRQRWRVAIEALADEYVAGVA 861

Query: 1010 SHLRLSEKSNIQSE 1023
            S++          +
Sbjct: 862  SNVAYRRDDLKYCD 875



 Score = 41.8 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 94/897 (10%), Positives = 212/897 (23%), Gaps = 108/897 (12%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIE--ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNL 99
           L  A   +     R  + L  E        ++ + LP I  L   + E        + + 
Sbjct: 21  LAAADTLVLTVNNRLSRRLTLELAGLLRQERQVSELPRILPLSAWLAESANELAFEADDD 80

Query: 100 NPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID 157
            P   + +    L     I                E    + +  + A  L+ +   ++D
Sbjct: 81  VPAYRLDSFATQLVWTEAIR--------------AEEAERVLLDASQAARLSMDADQLMD 126

Query: 158 IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217
                +            +    W +           + + L  ++A         ++RA
Sbjct: 127 E---WDLHVPSGADTDEYRGFARWRV----------RYRQTLAGIDAEDANQGYARVLRA 173

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE- 276
             E     T   +++AG T   P   RL+                      A      + 
Sbjct: 174 LEEG-RLPTPAHLVLAGFTDVSPRFHRLLRAFEAQGTRVSQWRDEQRIETVARRFEAADE 232

Query: 277 ---KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
                     +      HP    A +   L+ +    +R+  +S  + GR    +  F  
Sbjct: 233 GAEWRAAAAWAAGQLQAHPHGRFAIVSPQLEAESPFARRI--LSQALAGRDGAPAHVFNV 290

Query: 334 PDTSDMRNTDILENKIPNIQKCFS-------DVALIEAD-----------NEREEAISIA 375
                +    +    +  ++            V ++ A                 A   A
Sbjct: 291 AVGRPLNEWPMARAALAWLRALAECAGGKGCGVDVLGAALLAGHCAGDVRERARLAAIDA 350

Query: 376 IALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISA---------------- 417
              R ++          L+     LA+        +      +                 
Sbjct: 351 RWRRQAIQHVSPHDWKKLLADIPTLAQAWNQAFEIWTQGGRQATCDVWMLRMKAALTALG 410

Query: 418 --GIPLSTTLHSSILTSLLNA---------IFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
             G  +  ++   ++ +L +A                +A   L++       F  +    
Sbjct: 411 FPGEGVLDSVAYQVMGALGDALGSFSALAPAAGRLGGVAAVNLLQSVARSASFQPQRDPT 470

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
           A+  +  +          +  L        A+ K N  +P    R ++  +       + 
Sbjct: 471 ARLDVLGLLEAEGGYWDGVWLLGLTDDVLPASPKPNPLLPLAVLRQAKAPRATPEREREW 530

Query: 527 ILQCITPLVTYKTN----KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
                  L     +     +   G   +     +  T L +        +  L  E    
Sbjct: 531 AEGMYAALCRCAPDIIVSHSHMDGERELRPSPLIAGTALTDWTPPVADCVAALPQESLED 590

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
                 +     G  +     +  + +   +       ++   +    +      L    
Sbjct: 591 NQGPPLAPGNRGGGGLDVLDTQARNPLWAFVRHRLGGRELSPYADSATVNVRGQFLHKAL 650

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
            L+ G + +            L+ +++  +     E+     A   +     R      +
Sbjct: 651 ELVWGMMPDQETLHEVMATGRLAALLEQAVAQAADEELKDY-APALKALECQRARAVLAA 709

Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
             +     +     Q            NLK R           +          P    P
Sbjct: 710 WLDTEARRLPFAVAQVEKNHQWQRGALNLKLRLDRIDSLADGRNVIIDYKTGVAPAKPEP 769

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
             ++ R  +              YA                     G +   I    +  
Sbjct: 770 DWSRSRPVNV---------QLPFYAS---------VLADAAGGEVAGLVLAQIHARQVAA 811

Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           +   +       +    DS F +    P I   WR     ++  ++       +   
Sbjct: 812 QGLADEDLGVPGVTLAADSKFFQGLSWPEIRQRWRVAIEALADEYVAGVASNVAYRR 868


>gi|291544541|emb|CBL17650.1| ATP-dependent nuclease, subunit B [Ruminococcus sp. 18P13]
          Length = 1115

 Score =  148 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 109/983 (11%), Positives = 237/983 (24%), Gaps = 149/983 (15%)

Query: 64  FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123
             E  G  +       S   +    F      S        ++ + + L + I    +  
Sbjct: 47  LYEALGPTAFNAIQSLSFTSLARALFQQYGGRSGEYA---DDLTKTILLYQSIRALSDSS 103

Query: 124 PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183
                D   + P     +           A  I  +       E L   +  +       
Sbjct: 104 AFSHFDRQAKKPAFQDAA-----------AKAITELRRGSISPEALLE-QTARLEGRLRD 151

Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243
            A  L +    +  +L E      +          A +        + +           
Sbjct: 152 KAADLAVLYGDYDRQLREKGYKDSLTDITEAAALCAGN-EHFKGALLFLDEFESFTGDQM 210

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             +  +        +    +                            P+     + D  
Sbjct: 211 EFLDVLFAQAKELWITLRTED---------------------------PEAPAYSVFDAT 243

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
           +     +  L       +   +               +  IL      +      + + E
Sbjct: 244 NATYRRLLALAQKHGTGHEVLLCKEPFRFRYPDLAHISRSILRPVHTQLPTA-EHIHVFE 302

Query: 364 ADNEREEAISIAIALRMSLDENKK---KSALITADRNLARRVK-LELTRFGINIDISAGI 419
           A N   EA      +R  + E        A++T        +      R+ I   +   I
Sbjct: 303 AKNCYTEADCACAHIRKLVREQGVRYADIAIVTHQLEEYAGILESACIRYSIPFHLDRKI 362

Query: 420 PLSTTLHSSILTSLLNAIFK-LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
               T    +++ +L  I +       +    K  L            +      V    
Sbjct: 363 SCMHTALLQLMSGVLELISEKRPRTETLLRYAKTRLLGISCERTARLESYCYTWNVDG-- 420

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                         +  +               L  E  E  + L +        + T  
Sbjct: 421 --------------MMWLEPFTAGLEENSDLEALRLELVEPIMQLREACRG--QNVRTLC 464

Query: 539 TNKNSTCGNLSISD-WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
            N       +++    + +     +  C  E   L  LW      +L+ +   +      
Sbjct: 465 KNLYQFLCRMNVPKNISGIAQDYQEAGCTAEASALKALWG-----SLADVLDALCNVLGD 519

Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                  + D++  L+   +     +    + +     +RL     + + G++EG +P  
Sbjct: 520 AVLPTSRFRDLMQALLSRISYSTPPQSLDAVLVASAETARLNAPKYVFVLGVSEGFFPSQ 579

Query: 658 TAKNPFLSRVMQSDLNLK------TAEKYIGQAAH-DFEMANGTRH-LIYTRSLRENNIP 709
                  +   +  L  +      + E+ IG      ++  +     L     L +    
Sbjct: 580 VHSTGLFTDADKQQLEARELFLSRSTEQLIGDERLIAYKTLSSASDGLYLFYPLSDAAGS 639

Query: 710 TI-ASRWLQRLLVL------------------------------------GGTDFFDNLK 732
           +   S  +Q++  +                                              
Sbjct: 640 SRSPSALIQQIRDMFDAPMLRIAEQEDPCMYAATPRAAYDLTVQGFYRHTTEGASIREAL 699

Query: 733 KRGQCYLDWTRKLDYTTKQPH--YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
           K    Y      LD     P       +    L       S + ++     P+  Y    
Sbjct: 700 KSDPVYGPRLASLDTLALTPEHRIAHTERIRELFGDRLYLSATRLETYNLCPFQYYMNYG 759

Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK----------QIID 840
           L +      KK+ +  + G L H  + +L+    +K + +     +          Q ++
Sbjct: 760 LGIRA--DQKKEINPLETGNLVHYCLEQLLTGCPDKESFDALTEAEVTARVEQYAAQYLE 817

Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK--IQSSIEKIFVNIPAKMAIESIGIHL 898
                                      + H ++   QS+   + + +       SI + L
Sbjct: 818 QAMGGSFGKDARFASNYRRITGSIPPLIRHLQQELSQSAFRPVSMELKLSRQDGSIPVTL 877

Query: 899 T----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAAL 944
           T          G  DR+DL +      + + DYKTG            +D Q+ L   ++
Sbjct: 878 TTPSGIQLILGGKIDRVDLYEENGTRYIRVIDYKTGKKEFDLGKLLYGVDMQMLLYLFSI 937

Query: 945 KAGSFSQIDCRKVANLFYIRLKQ 967
                 +      A + Y+    
Sbjct: 938 TE-PEGKYGGAVPAGVLYVPAGG 959


>gi|23957810|gb|AAN40823.1| unknown [Synechococcus elongatus PCC 7942]
          Length = 865

 Score =  148 bits (372), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 93/595 (15%), Positives = 187/595 (31%), Gaps = 64/595 (10%)

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP--LVTYKTNKNST 544
             L   + D +     +   P      S              L+   P  LV ++T+    
Sbjct: 288  RLGRWLEDLLTAIAADFDYPSGIRVFSPSFCAALPDGRQRQLRRDRPQNLVAWQTSLAPE 347

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI--IETGSCIKANA 602
                 ++      V  L+        +     + ++   L+ L  ++  +   +      
Sbjct: 348  FSPWPLAASRTEWVGQLRQWLQQLGLRQGLRRWPQDLVALNRLQQQLKNLAEPASETLTR 407

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             +W     +LI   +  P       + +    +        +   GLNEGVWP   A + 
Sbjct: 408  QQWCQEFEQLIR-ISRTPVQPGRGGVQLDRPEQIVGAQIGHVFYLGLNEGVWPAPLASSS 466

Query: 663  FLSRVMQSDLN-----LKTAEKYIGQAAHDFEMANGTRHLI-YTRSLRENNIPTIASRWL 716
             +    +  L      L TA   + QA   +  A        ++   + +N   + S +L
Sbjct: 467  LIDYSDRRQLQRLGLPLPTAASLVQQAKVQWIGALAATQTAQFSWVRQHDNREQLPSAYL 526

Query: 717  QRLLVLGGTDFFDNLKKRGQ----CYLDWTRKLDYTTKQPHYKRPKPFPPLEA------- 765
            +++ +        +     +      L  +  +D      H  + +              
Sbjct: 527  EQMGLRSQITPAADSPHSPEEYRRRLLAQSTLVDDGDPIAHSAQQRSQQVQARLQGEAVW 586

Query: 766  ----------QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                        R  S + I QL   PY   A ++L L        DPD    GTL H  
Sbjct: 587  NGQLADSISIPTRPLSVTGIIQLGQCPYRWAASKLLNLQTDSERSDDPDAAMTGTLLHKA 646

Query: 816  ITELIKKRINKNTPEINHLMK--QIIDSHFEKENLPPHIDIIWRHLFHK-------ISHS 866
            +  L  +   +  P+   L+   +   +H  K+      D+     +         +   
Sbjct: 647  LELLTPQLKTETLPDREILLAIVETAAAHLAKQRPREG-DLRQHPRWTAFQLSYVNLLER 705

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
             L          E I V    +   + + +   G  DRID   +G +++ DYK G   +K
Sbjct: 706  LLRSPNFRSPDSEIIAVEQSFEGQWQGLPV--RGTIDRIDRTSAG-LELIDYKLGSTTQK 762

Query: 927  ---ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
                  +  +D QL+L     + G+ +    + VA + Y+ +++         +      
Sbjct: 763  VWDTDQKLKLDLQLALYQ---EVGAAAIAPDQPVAQVRYLHMRKAEASQPKPAE------ 813

Query: 984  DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
                      L ++   L+   +     +R  +      ++  L R +E ++E D
Sbjct: 814  -------ATELEQLAARLKQAFEGGHFPIRPHDSYCRYCDFAGLCRHSELKQEVD 861


>gi|238060936|ref|ZP_04605645.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149]
 gi|237882747|gb|EEP71575.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149]
          Length = 1095

 Score =  148 bits (372), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 109/1043 (10%), Positives = 216/1043 (20%), Gaps = 127/1043 (12%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGK---KSTILPIIKSLGDVVEEKFTADLLLSYNL-NP 101
             V +    +R   +LR            +    P++++                      
Sbjct: 9    RVLVLTFGRRQATDLRRRIEARVAGDGHRVLREPLVRTFPAYAYGLLRRAAAERGEPSPR 68

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             ++  ++ L +  L+ +   +      D  P                A  L D++     
Sbjct: 69   LLTGPEQDLIIRELLDVVGEE-----PDDDPVGWPEELRPALRTRAFAAQLRDLLMRAAE 123

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN---ASSPVGYQIAL---- 214
                  +L  L        W  AA FL+        R V      A  P     A     
Sbjct: 124  RGVGPVELARLGERLGRADWPAAARFLREYVAVLALRDVSNRGSIAYDPAELVRAATGLL 183

Query: 215  -MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
                E     +     + +     + PA   L++ +A    G  ++   D    T  +  
Sbjct: 184  LDDPELLEAERRRLAHVYVDELADTDPAQLDLLAVLAG--GGKSLVAFADPDSATYAFRG 241

Query: 274  ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR---EDVKRLGNVSNEMYGRSMVISKS 330
                           ++    +   L              +RL            +    
Sbjct: 242  TDPAGVAAFPHRFRTASGAPAAQVVLTTSYRAGPGLIAATRRLAGRLRGPAAHRRLCPLP 301

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA 390
              PP T  +R      ++   + +      L++       A+ +    R      +    
Sbjct: 302  DAPPGTVQVRTFRSATSEAAWLAQALRAAHLLDGVPWSRMAVLVRSTARQLPSLRRALHT 361

Query: 391  LITADRNLARRVKLELTRFGINIDIS------------------------AGIPLSTTLH 426
                       + L L      + +                            PL+    
Sbjct: 362  AGVPTVVHGEDLPLHLQPAVAPLLLLLRCALEPARLDEESAVALLHSPLGGADPLAERRL 421

Query: 427  SSILT--------------SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
               L                +++A+    +   I      P             A     
Sbjct: 422  RQGLRAIALAAGDRRPSGELIVDALRDPEELSGIDRRWAEPAQAVAGLLAIAREAAQRPG 481

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL-----------AV 521
              A       +D   L       I   +  T       R   E  +            A 
Sbjct: 482  ATAEDVLWAVWDASGLAERWAGAITLGRAATGEHETARRWRAEAADRDLDAVLVLFDAAA 541

Query: 522  LLVDHILQCITP--LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
               D +    T   L                +D  +       +        L  +   +
Sbjct: 542  RFADRLPGARTEVFLDHVLGQDLPADTLAPTADRGEAVRLLTAHAAKGLEWDLVAVAGVQ 601

Query: 580  EGKTLSSLFS-------------KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
            EG                        ++G   +A  I     +                 
Sbjct: 602  EGVWPDLRLRGSLLGSERLVDVLAGRDSGDGGRAVLIGQTSALLDEERRLFHVAVTRARR 661

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY------ 680
             L +     + +   D                            D      E        
Sbjct: 662  RLLVSAVASASVGGDDHEEQPSRFLYELDPTRPPGKGDGAPGHGDDPDGGPEGTPDGSSG 721

Query: 681  ----------IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
                          A   +   G          R         R L    ++        
Sbjct: 722  RGPAEGGGPGTAGQAEGGDPGAGAPVEGGVEPGRGTLPVAGPPRALTLPALVAELRTAVA 781

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ-------------PRTYSFSEIKQ 777
                                        P      +             P   + S ++ 
Sbjct: 782  DPATPYHRRSAAAAELARLAAAGVPGAHPDDWWGLRGLSDDRPLVDEGEPVRVTPSGMES 841

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
             +         R                   G L H              + + + L++ 
Sbjct: 842  ALRCSLRWLLERHGGSGPASA------AQGVGNLVHAA-----AMLAEDASADRSALLEY 890

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
            +       E     +    R     +    L         +  I      ++      + 
Sbjct: 891  VAARFDAIELAARWMVGPERERAEAMVDKLLRWLAGNPRRLLAIEHEFAVRLDDPHRPVE 950

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
            LTG  DR+++   G + + D KTG +      +    PQL    AA++AG+F++    + 
Sbjct: 951  LTGRVDRLEVDADGRLVVVDLKTGKSTVVTEREIGEHPQLGAYQAAVEAGAFAEFGD-ES 1009

Query: 958  ANLFYIRLKQKFKIDCITNDKKK 980
                 ++L    +     +    
Sbjct: 1010 GGAALVQLGTGARDAREQSQPAA 1032


>gi|118467070|ref|YP_883295.1| superfamily protein I DNA and RNA helicases [Mycobacterium avium 104]
 gi|118168357|gb|ABK69254.1| superfamily protein I DNA and RNA helicases [Mycobacterium avium 104]
          Length = 1096

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 127/1085 (11%), Positives = 274/1085 (25%), Gaps = 128/1085 (11%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57
             ++  V    P          A    T+     +   N       V     T++A     
Sbjct: 21   EEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLIANGYAHPGQVLGLTFTRKAAGQLL 80

Query: 58   QELRSEFIEITGKK--------STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
            + +RS    + G            + P    +       F   LL  Y L  PV    RL
Sbjct: 81   RRVRSRLARLAGVGLGAASPNHGAVDPEAAPVVS-TYHAFAGSLLRDYGLLLPVEPDTRL 139

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETEEKKWE 167
            L    L  +  + +      L  +   +   S    +W  LA++L D    +     + E
Sbjct: 140  LSETELWQLAFDVVNRYRGPLRTDKTPAAVTSMVLRLWGQLAEHLVDT-SQLRETHLELE 198

Query: 168  DLHALKN------EKYGMWWLLAA-------DFLKIASKYWTERLVELNASSPVGYQIAL 214
             L           ++    WL            L    +   ER+  +          + 
Sbjct: 199  RLVHALPAGPYQRDRGPSQWLRRLSGTQSERAELVPLLEALDERMRAVKVMDFGMQMASA 258

Query: 215  MRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIP 267
             R      +    ++G    +++     +  A    +S +      +G  +    D    
Sbjct: 259  ARLAAAFPQVGADLRGRYRVVLLDEYQDTGHAQRIALSALFGGGVDDGLALTAVGDPIQS 318

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               W   +  +    +++   S      + +L          ++    +S E   RS+ +
Sbjct: 319  IYGWRGASATNLPRFTTDFPRSDGTPAPVLELRTSWRNPPRTLRVANAISAEARRRSVAV 378

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
                  PD         L   +   ++  +D   I+A   R  A  ++            
Sbjct: 379  HALCPRPDAPPGTVRCALLPDMVAEREWIAD--HIDAHYRRARADGVS----------PP 426

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
             +A++      A  +   L   GI +++     L +    + L ++L  +       A  
Sbjct: 427  TAAVLVRRNADAAPIADALRARGIPVEVVGLAGLLSVPEVAELVAMLRLVADPTAGAAAM 486

Query: 448  TLVKHPLAKFGFPEKYLSR-AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
             ++  P  + G  +         AL      G   + + +   +   +  A         
Sbjct: 487  RVLTGPRWRLGARDLAALWQRARALGGAGTAGGPATAEAIASAADPRNVEADAVCLADAI 546

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                            +     +                  +         V        
Sbjct: 547  ADPGPAEGYSAAGYARIAALAAELSALRAHLDHPLGDLVAEVRRVMDLDCEVRAAAAAGW 606

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                 L        G    +       + S   A  + ++D+   + +G    P      
Sbjct: 607  AGTEHLDAFADVVAGYAERADTGGTDASASASVAGLLAFLDVAESVENGLPAAPLAVARD 666

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV------------------- 667
             + +L    ++ L +  + +  L+ GV+P  TAK  +L+                     
Sbjct: 667  RVQVLTVHSAKGLEWQLVAVAHLSGGVFPSTTAKTTWLTDAAELPPLLRGDRARPGALGI 726

Query: 668  -----------------MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENN 707
                             +          +   +    +         +            
Sbjct: 727  PVLDTSDVTNRKQLSDKISEHRRQLEQRRVDEERRLLYVAVTRAEDTLLVSGHHWAATGI 786

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
             P   S +L  +  +                                     +P      
Sbjct: 787  KPRGPSDFLCEIKDVIDASAAAGDPCGTVEQWAPAPADGERNPLRDNAVEAVWPADPLAS 846

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---------GTLFHNIITE 818
            R         L+    A+ A        +  +  D D               +    ++ 
Sbjct: 847  RRGEVERGAALVR--QAMAAEPGDPGADVEGWAADVDALLVERARVTGPPPQVLPGQLSV 904

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF------------------ 860
                 + ++       ++  + S  E   L  +    W   F                  
Sbjct: 905  SSLVGLARDPARAAQRLRHRLPSRPEPHALLGNAFHAWVQKFYGAECLFELGDLPGAADS 964

Query: 861  -----HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
                  +++       E   ++   + V +P +M I      + G  D +     G   +
Sbjct: 965  DVGDTAELAELQAAFLESPWAARTPVAVEVPFEMPIGDT--LVRGRIDAVFAESDGGATV 1022

Query: 916  TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF-YIRLKQKFKIDCI 974
             D+KTG  P    A +    QL++   A    + +++    V   F Y+R +     + +
Sbjct: 1023 VDWKTGAPPDSPEAMRQAAVQLAVYRLAWA--ALAKVPESSVRTAFHYVRARTTVVPEAL 1080

Query: 975  TNDKK 979
                +
Sbjct: 1081 PTSDQ 1085


>gi|167631018|ref|YP_001681517.1| ATP-dependent nuclease subunit b [Heliobacterium modesticaldum
           Ice1]
 gi|251764590|sp|B0TDI1|ADDB_HELMI RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|167593758|gb|ABZ85506.1| ATP-dependent nuclease subunit b [Heliobacterium modesticaldum
           Ice1]
          Length = 1224

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 86/847 (10%), Positives = 205/847 (24%), Gaps = 90/847 (10%)

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
           P+ ++ + + L  L+   +++L    +               + + L    A  +D  +T
Sbjct: 86  PIGDLGKRMILRNLLEKHKDELRLFHRSAGQPGFADALAGALSELKLYNIDATSLDRCQT 145

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
           E             +           L +        L      +     + L+      
Sbjct: 146 EVI---------ERQGAGLLADKLHDLALLYGALKTFLE--GKYTDPDDYLHLLAQRIPG 194

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
            +      + + G  G  P    +++ + +      V   LD        +         
Sbjct: 195 SVMLRDAEVWVDGFAGFTPQELSVLAALMSACRRVNVALCLDPTELDEPCDLDDPFFRTR 254

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            +         Q  L +L     I  E    L     +   R        L         
Sbjct: 255 ET---------QAKLLQLAFDRGIVIEKALHLVPAPGQSAPRFQHPELQHL--------E 297

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD-RN 397
           +       P        + +  A N R E    A  +     +     +  A++  D  +
Sbjct: 298 SFYFRRPAPPWLGGTQSLFVCAAANRRSEVEGAAREIIRLCRDQGYRWRDVAVLLRDLES 357

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
               ++   + FGI + I +  P        ++ S L A+ +   +  +   +K  L   
Sbjct: 358 YYDSIESVFSDFGIPLFIDSKRPAPHHPLVELIRSALEAVLRDWAYEPVFRYLKTDLVPL 417

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
              E            +  R  ++    +  + L L   A  + +       + ++    
Sbjct: 418 SRGETDRLENYVLAHGIRGRRWRDREPWLFRRRLTLGEDALSEFSDQELAELAEINGARD 477

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L       +                + +    +++    +       R       
Sbjct: 478 RARAALASFHKAVVGAKAVRPITAALYQLLVDLKAPEQISCWIAEAEAAG--RIEEAHAH 535

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            +    +  LF +I+E+      +   +  ++   +D   +     +   +F+     SR
Sbjct: 536 RQVWAAVIDLFDQIVESLGETPLDLATYAVVMEAGLDSLKLSLIPPELDQVFVGSLDRSR 595

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT--------AEKYIGQAAHDFE 689
                   + G++EGV P     +       +  +   T          +   +  H + 
Sbjct: 596 CPGIRAAFVLGVSEGVLPARPKDDGIFDDKERERIYALTGLELAPGSRRRLFDEEYHIYV 655

Query: 690 MANGTRHL-IYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT----- 742
                      +  L +        S  + R+  L                         
Sbjct: 656 ALTRASERCYLSYPLADAEGRAQLPSSVIARVRELFPQVTERTWLLEPGSLPTGAGLSGS 715

Query: 743 ------------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                                          ++   +     P           S  + L
Sbjct: 716 AFAGAATAETAAMAQTALAARTTKEAAMSAVERELAEEYIVHPARSLSY--LIPSLREAL 773

Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE-----LIKKRINKNTPEINH 833
              P  +    +          ++        L+H    +     + ++           
Sbjct: 774 ARRPVPLVWWAVYSWLAERPAWRELLARVLSGLWHKNREQDLPKPVSRRLFGDPLRASVS 833

Query: 834 LMKQIID---SHFEKENLPPHIDIIWR-------HLFHKISHSFLEHEEKIQSSIEKIFV 883
            +++ +    SHF    L      I+R         FH     F E   + +     +  
Sbjct: 834 RIERFLACPFSHFISHGLRLKERRIFRLAAPDLGEFFHAALKQFGERLRRDRLDWGALPR 893

Query: 884 NIPAKMA 890
               ++ 
Sbjct: 894 EELFRLT 900


>gi|157164411|ref|YP_001466191.1| hypothetical protein CCC13826_0735 [Campylobacter concisus 13826]
 gi|112801476|gb|EAT98820.1| conserved hypothetical protein [Campylobacter concisus 13826]
          Length = 781

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 146/453 (32%), Gaps = 61/453 (13%)

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            + L+    ++         +  +  +I   L++   +         + ++G LESR + F
Sbjct: 384  EKLALELFRMENLCRYFSFSLKQLSEIF--LLNISRLSIDDVGGGKISVMGMLESRGMKF 441

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYT 700
            D +I+   N+   P  +A   FL+  ++    L +  +        +E      + +  +
Sbjct: 442  DGVIIVDFNDNFIPARSANEMFLNSKVRQKAGLISYVERENLQRFYYESLINNAKKVAIS 501

Query: 701  RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
              +      +I SR+L+    +    F D           + +         +    +  
Sbjct: 502  CCVN---EESIPSRFLKNFKTIKDEKFSDE---------AYLKLFLKGEASLNLSDDEII 549

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
               +      SFS +   +  P   Y  +I  +D       +   T +G   H  + E  
Sbjct: 550  LEHDFFANPLSFSTLNLFLTCPRKYYYTKIAHIDAPKAIASELG-TKQGNSVHGALFEYY 608

Query: 821  KK--RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSS 877
                    NT ++      +      K+NL P    IW H F +       +E +  ++ 
Sbjct: 609  TSEFYKQNNTFDL-----AVFKEMLAKQNLTPLEFEIWTHKFKEY----EIYENERLRAG 659

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937
               +      +      G+ + GF DRID+  +G V I DYKTG+             QL
Sbjct: 660  FRVLECEKEVQSEF--CGVQIKGFIDRIDVGANGDVLILDYKTGEANVN-------SLQL 710

Query: 938  SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
            +   A             KV + +Y     K +   +   K     +   EK        
Sbjct: 711  AFYEALY---------GGKVRSAYY---TIKNEPSLLCPKKSVEDLNGEIEK-------- 750

Query: 998  VTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
            +  +   +  F         +    EY  L R 
Sbjct: 751  LKAINKTKINF----ERKSGACAFCEYVTLCRR 779


>gi|15615542|ref|NP_243846.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125]
 gi|10175602|dbj|BAB06699.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125]
          Length = 1129

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 96/812 (11%), Positives = 208/812 (25%), Gaps = 124/812 (15%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQI----ALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
            D L+  +  + ER   L+A      Q      L + + +         +++     +   
Sbjct: 330  DLLQYFAARYKERKQLLSAFDFSDLQRNAVCLLDQEDVQKSCHDQFKHMMVDEFQDTNQM 389

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
               +++ +             D       +        N  S         Q+       
Sbjct: 390  QMDVLTKINPSYQ----FLVGDGKQSIYRFRGADVTLMNEMSEQARDEKEAQFI------ 439

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             ++        + +  N ++  +M        P  S +   +  +     +    +    
Sbjct: 440  EMNTNYRTTAPVIHAVNGLFAHAMKDVSVHSVPYASLIPAREPEKEDDIRVSLHITKTTE 499

Query: 362  IEADNEREEAISIAIALRM--------------SLDENKKKSALITADRNLARRVKLELT 407
             E DN++     IA  L                    N    A++   R     ++  L+
Sbjct: 500  KEKDNDQVPYHHIADRLLEMVRTGEPTVWNGESWRSPNWGDMAILIPVRTELLALERALS 559

Query: 408  RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
              GI   +  G+            +LL  + +  + + +  L++ P+      +      
Sbjct: 560  DKGIPYHVYGGVGFYERQEILDFVTLLRWLDRPFEELYLFALLRSPMFGLTLDDLMFV-- 617

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
                                                      +       +    L    
Sbjct: 618  ----------------------------------KERFSDELTWFDIVVDKEMASLFAER 643

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                   V  +T  +       +               L       +L+ +E G      
Sbjct: 644  PVVTDAFVRLRTWLDRWVPFRPVPSLIDHLYELFDQTGL-----KMSLFVQENGMQKVRN 698

Query: 588  FSKIIETGSC-----IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
              K+I+  S      ++     +  I   +      + +    + + I+    S+ L F 
Sbjct: 699  VEKLIDVMSGWKTNVLEELLQRFDLIQAEVEKEGEAEVEQVAGNVVHIMTVHASKGLEFP 758

Query: 643  TLILGGLNEGVWPKNTA-----------KNPFLSRVMQSDLNLKTAEKYIGQA------- 684
             + L  L+                    ++ +        L          QA       
Sbjct: 759  IVCLPQLDRVPQRDKGQVRYDREMGIVLRHEWEEDDGVVKLETPAFALVKEQADLATMAE 818

Query: 685  --AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                 +  A   R                 S WL  +              + +  +   
Sbjct: 819  NKRLFYVAATRARD----YLWMTGKEQPSTSSWLYEVEEALEEMPELRSHLKIEEDVASH 874

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD-------F 795
             + +   +        P  P + +    S +E+   I DP A Y R IL ++        
Sbjct: 875  DRWEKDIQTYKVP---PIVPRQPELVPLSVTEMMTFIQDPVAYYERYILGIETSVQHEAK 931

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                  + D +  G+L H +   + +      +  I   +     +  E+++   HI  +
Sbjct: 932  TKQEDSNIDPSKVGSLAHKVFELVDQGVTLAGS--IEMTLAAHDWTQDERKHYEEHIQRL 989

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
            +R +       F           E +        + E   I   G  D+I   ++    I
Sbjct: 990  FRGVNQHSLQWF----------GEPVANEWAFSFSFEGAEIV--GEIDKIVKNEN-EYHI 1036

Query: 916  TDYKTGDN-PKKETAQKLIDPQLSLEAAALKA 946
             D+KT           +  +PQL+L A A + 
Sbjct: 1037 IDFKTNQIRRSGAELLRFYEPQLALYAEAYEQ 1068


>gi|313890561|ref|ZP_07824189.1| ATP-dependent nuclease subunit B [Streptococcus pseudoporcinus SPIN
            20026]
 gi|313121078|gb|EFR44189.1| ATP-dependent nuclease subunit B [Streptococcus pseudoporcinus SPIN
            20026]
          Length = 1078

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 122/956 (12%), Positives = 279/956 (29%), Gaps = 130/956 (13%)

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
            +     L D+   ++       +L     E          DF+ I      E L+     
Sbjct: 112  LAFILQLIDLYKELKGANIAVTELEMEDPE-------KKNDFISIFLAV--EDLMARYQL 162

Query: 206  SP--VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                   Q + + A ++   + ++  +II G T      A L++ +       ++   L 
Sbjct: 163  DETSSLEQFSQVIASSQIDDQLSQTVLIIDGFTRFSTEEANLVAQLDAKCRQVVIGTYLS 222

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                +  +        +I        T+   +    +    I  E  ++L  +  E +  
Sbjct: 223  PKAYSKNFTEGNIYQASIDFFRELSQTYGVKAQY--VKGQTIYPESFQKLTKLLEEHFDF 280

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
            S   ++       S      +                     N+++E   +A ++R  L 
Sbjct: 281  SESENQLSSQDKESFQIWQSL---------------------NQKDEIEHVAKSIRQKLY 319

Query: 384  ENKK--KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
            E  +     ++  D    +    +L  ++ I         +S       + +L       
Sbjct: 320  EGYRYKDILVLLGDLESYQLQIGQLFDKYEIPYYFGKAEAMSHHPLVQFIDALERIYGYN 379

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
                 I +L+K  L         L + +  ++   + G++       L   +  R   + 
Sbjct: 380  WRNEDILSLLKTGLFSHVED-FDLDQFEAYVQFADINGSRKFAKPFSLNP-LDHRDRRKF 437

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
            +   +   +  +    +EL           +T L+ +            +S         
Sbjct: 438  DLEIINRVREVIYSPLRELYSQKEQTGASFLTGLLNFLKQVELPAKLEQLS--------- 488

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                  +E+ +  +L      K  +++  +          +     ++I   +     + 
Sbjct: 489  ---YSQNENEQEKDLE---VWKVFTTILEQFHHIFKDDIISLEHAFNLIKMGMQAANYRV 542

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
                   + I      +  +   +   G+    +PK T K   +S   ++  N K +   
Sbjct: 543  VPATLDVVTIKSYDLVQPHSKAFVYAIGMTSAHFPKVTLKKSLISDKERALTNQKLSSFQ 602

Query: 681  IGQAA--------HDFEMAN---GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
              + A        H   ++      + L+ +  ++ N +    S ++  LL  G      
Sbjct: 603  RFEVASHETTKKNHFMALSLFNSANQELVLSVPMQLNEVSVELSPYISLLLDFGIPLLEK 662

Query: 730  -----------------------NLKKRGQCY-----------------------LDWTR 743
                                    L  R                           L   +
Sbjct: 663  GKSQFSAMETDIGNYKSLLSQVIELNTRQIELSSEEENFWTVMLRYLKGRLAKEDLVLPQ 722

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
               +   +P  +        + +P   S S +    ++ Y  + + IL L  +      P
Sbjct: 723  VKKHLQTKPLSQEVIQTRFPQEKPIHLSHSALTVFYDNQYKYFLQYILGLQEMESIH--P 780

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFH 861
            D    GT  H +   ++    +    +      +    +S F+             HL  
Sbjct: 781  DARQHGTYLHRVFERVMADATDLAFDDKVKRAIEQTNQESSFKYFYQDDAQGRYSLHLLE 840

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
             I+ +  +  +  Q+ +  +      ++ I+   + + G  DRID L    V I DYK+ 
Sbjct: 841  GIAKATADIFKTHQN-VHVLAQEEKFQLPIKDK-LIIKGTIDRIDQLVDQSVGIVDYKSS 898

Query: 922  DNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
             +          ++ QL    +ALK    + I    +    Y+ +++      +      
Sbjct: 899  ASAFDLSLFFNGLNSQLPTYLSALKRHYQNHIP---IFGAMYLHMQE----PTLDLASYP 951

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD---HLARVAEW 1033
                +L +   K L     +    E+ +++       +N  +E +    LA   EW
Sbjct: 952  ELDSKLLKDHYKELT-YKGIFMESEKEYLASGAYHITNNTFTEEEVAVLLA-YNEW 1005


>gi|168214038|ref|ZP_02639663.1| ATP-dependent nuclease, subunit B [Clostridium perfringens CPE str.
            F4969]
 gi|170714493|gb|EDT26675.1| ATP-dependent nuclease, subunit B [Clostridium perfringens CPE str.
            F4969]
          Length = 1158

 Score =  146 bits (369), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 128/907 (14%), Positives = 262/907 (28%), Gaps = 143/907 (15%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            + LK     +  RL E         Q+ L+  + +         I I   +   P    +
Sbjct: 156  EELKDVFNEFNSRLHE-GYVDE-EDQLLLLNEKLDGCSLYDGAEIWIDEFSSFTPNQLSV 213

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            +  +        +   +D        + +   + N               L  L+    I
Sbjct: 214  IGKLLKRAKSVNITLSIDEVNSPKGESDLFVATKNTEK-----------RLMNLIQEEGI 262

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                   L       +  +  ++           +                + + L  A+
Sbjct: 263  AFNGYINLNEDIPYRFKENKELAHIERQLYAYPFKQYRGKN----------NSLRLYRAN 312

Query: 366  NEREEAISIAIALRMSLDE---NKKKSALITADRN-LARRVKLELTRFGINIDISAGIPL 421
            N  +E   +A  +   + E     K  ++I  D +   + V      + I   I   I +
Sbjct: 313  NNYDEIEFVAKDILRLVREKQYRFKDISVICRDVDNYEKVVSAIFAEYEIPYYIDKKIDI 372

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            ++      + S ++ I K   + ++   +K  L K        +   + LE   L     
Sbjct: 373  ASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRG-VEGAELIDELENYVLAYGIK 431

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                M+    V    +  K           +SEE+K+    L D     + PL  +    
Sbjct: 432  GKKWME--EWVNYSSSILKEEE--------ISEENKQRLERLNDIRETIVAPLDEFNKQC 481

Query: 542  NSTCGNLSISDWT-KLTVTCLQNVCLDE---------HRKLPNLWFEEEGKTLSSLFSKI 591
                     +    +   + L  +   +            +    + E       +  + 
Sbjct: 482  KGKKTLKEFATILYEFLDSKLDVMDTIDKYVDYFKENDMAIEAKEYSEVRDIFIDVLEQA 541

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            ++       +  E++ ++   +    +         + I      +      L + G+N+
Sbjct: 542  VDVLGNEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVND 601

Query: 652  GVWPKNTAKNPFLS---RVMQSDLNLKTA---------EKYIGQAAH------------- 686
            GV P  + +   LS   R +  +  +  A         E+++   A              
Sbjct: 602  GVLPSASKEEGILSDNDREILLEKGISLASDTRTKIFEEQFLVYTAFTIAEEYLVVTYPL 661

Query: 687  -DFEMANGTRHLIYTRSLRENNIPTIAS-----------------RWLQRLLVL-----G 723
             DFE  +    +I  R  +        S                   L  L++       
Sbjct: 662  ADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVNDKYEKISAKIPTLNELMIAIRKKYD 721

Query: 724  GTDFFDNLKKRGQCYLD---WTRKLDYTTKQPHY---------KRPKPFPPLEAQPRTYS 771
            G +  D  K     YL    W  +++Y  K   Y         ++ K          + S
Sbjct: 722  GAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYEDNKNKISLS 781

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT--- 828
             S +++    P+A Y +  LK         +    D G+  H I+ E   +   K+    
Sbjct: 782  VSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDLKWS 839

Query: 829  ----PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSI 878
                    +++  ++D+  +      L       +    F +I      +  E+  +S  
Sbjct: 840  DLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKRSDF 899

Query: 879  EKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGDNP- 924
            E     +           K+ +      +L G  DR+D L   G   + I DYKTG    
Sbjct: 900  EIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGSKKF 959

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
                    +  QL +   AL   S + + +      + Y R+      D I   K   + 
Sbjct: 960  DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGDLTE 1014

Query: 984  DELSEKS 990
            +E+  + 
Sbjct: 1015 EEIKSEV 1021


>gi|307721873|ref|YP_003893013.1| hypothetical protein Saut_1958 [Sulfurimonas autotrophica DSM
           16294]
 gi|306979966|gb|ADN10001.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 782

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/400 (17%), Positives = 139/400 (34%), Gaps = 34/400 (8%)

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
             +    ++I  + +   T+     +   + ++G LE+R ++FD +I+   ++   PK +
Sbjct: 384 DMSVKSLMNIFMQRLAARTL--DDVRGGKVTVMGVLETRSVHFDAVIIIDFDDKNVPKRS 441

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRENNIPTIASRWLQ 717
            K+ FL+  ++   +L T         H +EM       +  +    E +     SR+L+
Sbjct: 442 DKDMFLNTQIRKVASLPTMSDRENLQKHYYEMLMARSQEVAISYVSSEQSSG---SRFLK 498

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
           +L +       +         LD+   L    KQ   +  +       +    S + +K 
Sbjct: 499 QLGIQENNLHSE---------LDYAEILFARVKQEPKQESEIVQEYSFKNIELSATRLKT 549

Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            +      Y + I  +      K  P   + G + H  + E+ +    +N       +K+
Sbjct: 550 FLTCKRKYYYKYIKYIKNHEIPKDMPQEYEIGNVVHRALKEVYE---KQNYYTDTQKLKR 606

Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-VNIPAKMAIESIGI 896
            ID   ++      +D     +  K   +F++ E +       +       K      GI
Sbjct: 607 DIDKALDEFCGESELDKYLVSMQKKRLEAFVDVEIQRFEQGWHVASTEEYFKA--PYAGI 664

Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
            + G  DRID  K   +++ DYKTG      K       D QL                 
Sbjct: 665 TIAGQIDRIDK-KENLIEVLDYKTGSYTLNTKNNFTDATDFQLEFYYLLA-------GGL 716

Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
             V +  +  LK+   +     D+K    + L       L
Sbjct: 717 GNVQSCGFYDLKESRIVPESFLDEK---LEILKSHIKDLL 753



 Score = 45.7 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 28/213 (13%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
           TI +P+ RAI+    +  + +  ++  LP   ++ D + +               +    
Sbjct: 5   TIVLPSARAIRH--EQLTQES--QTLFLPNYITMSDFISKLTLVKD------YKFIDEDS 54

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
           R+L L                D    S L +  +       +  +    + +  E     
Sbjct: 55  RVLLLLE------------ASDFKDFSALQIERNFFTFTKNSSYIFKFFEELSAE---LY 99

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
           D+H L N      +      L+   K + +   E      +     L      +      
Sbjct: 100 DIHQLCNADVYAEYEEHIAILQELYKRYEKLCDERKLLDRIFL-PKLYEFNEVYAKTHKN 158

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
             I + G          L+       +  +   
Sbjct: 159 IVIQLDG--HLTNFELELLEKALKFTSITLHFW 189


>gi|56750403|ref|YP_171104.1| hypothetical protein syc0394_c [Synechococcus elongatus PCC 6301]
 gi|56685362|dbj|BAD78584.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 865

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 92/595 (15%), Positives = 186/595 (31%), Gaps = 64/595 (10%)

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP--LVTYKTNKNST 544
             L   + D +     +   P      S              L+   P  L  ++T+  + 
Sbjct: 288  RLGRWLEDLLTAIAADFDYPSGIRVFSPSFCAALPDGRQRQLRRDRPQNLAAWQTSLATE 347

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI--IETGSCIKANA 602
                 ++      V  L+        +     + ++   L+ L  ++  +   +      
Sbjct: 348  FSPWPLAATRTEWVGQLRQWLQQLGLRQGLRRWPQDLVALNRLQQQLKNLAEPASETLTR 407

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             +W     +LI   +  P       + +    +        +   GLNEGVWP   A + 
Sbjct: 408  QQWCQEFEQLIR-ISRTPVQPGRGGVQLDRPEQIVGAQIGHVFYLGLNEGVWPAPLASSS 466

Query: 663  FLSRVMQSDLN-----LKTAEKYIGQAAHDFEMANGTRHLI-YTRSLRENNIPTIASRWL 716
             +    +  L      L TA   + QA   +  A        ++   + +N   + S +L
Sbjct: 467  LIDYSDRRQLQRLGLPLPTAASLVQQAKVQWIGALAATQTAQFSWVRQHDNREQLPSAYL 526

Query: 717  QRLLVLGGTDFFDNLKKRGQ----CYLDWTRKLDYTTKQPHYKRPKPFPPLEA------- 765
            +++ +        +     +      L  +  +D      H  + +              
Sbjct: 527  EQMGLRSQITPAADSPHSPEEYRRRLLAQSTLVDDGDPIAHSAQQRSQQVQARLQGEAVW 586

Query: 766  ----------QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                        R  S + I QL   PY   A ++L L        DPD    GTL H  
Sbjct: 587  NGQLADSISIPTRPLSVTGIIQLGQCPYRWAASKLLNLQTDSERSDDPDAAMTGTLLHKA 646

Query: 816  ITELIKKRINKNTPEINHLMK--QIIDSHFEKENLPPHIDIIWRHLFHKIS-------HS 866
            +  L  +   +  P+   L+   +   +H  K+      D+     +             
Sbjct: 647  LELLTPQLKTETLPDREILLAIVETAAAHLAKQRPREG-DLRQHPRWTAFQLSYVNLPER 705

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
             L          E I V    +   + + +   G  DRID   +G +++ DYK G   +K
Sbjct: 706  LLRSPNFRSPDSEIIAVEQSFEGQWQGLPV--RGTIDRIDRTSAG-LELIDYKLGSTTQK 762

Query: 927  ---ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
                  +  +D QL+L     + G+ +    + VA + Y+ +++         +      
Sbjct: 763  VWDTDQKLKLDLQLALYQ---EVGAAAIAPDQPVAQVRYLHMRKAEASQPKPAE------ 813

Query: 984  DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038
                      L ++   L+   +     +R  +      ++  L R +E ++E D
Sbjct: 814  -------ATELEQLAARLKQAFEGGHFPIRPHDSYCRYCDFAGLCRHSELKQEVD 861


>gi|153008153|ref|YP_001369368.1| double-strand break repair helicase AddA [Ochrobactrum anthropi ATCC
            49188]
 gi|151560041|gb|ABS13539.1| Double-strand break repair helicase AddA [Ochrobactrum anthropi ATCC
            49188]
          Length = 1180

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 104/913 (11%), Positives = 222/913 (24%), Gaps = 81/913 (8%)

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVS--NIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             + +  ++     + +    +         R  E           L         E    
Sbjct: 247  PIPEFSDDALELIMSIQKGASRAQDFALQLRRFEKVTSQRDREAVLRAAFLKTTGEPKSG 306

Query: 138  LPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
              +  A    L  +  +  D      E+  + L  L   +     L A   +    + + 
Sbjct: 307  SYVGSAAVKKLLPDFEEDFDAAAARVEQGLDRLKEL---RLVRLNLAALTLIDNLLQRYH 363

Query: 197  ERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPATARLMS- 247
            +   +             +   A        ++ +      I++  +  + P   +++  
Sbjct: 364  DLKRQRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQWQVIRM 423

Query: 248  -------TVANHPNGAIVLPGLDCHIPTAIWNTI--TEKSTNITSSNTTYSTHPQ-YSLA 297
                    V        +    D       +      + +    S +         +   
Sbjct: 424  LSEEFFSGVGQRNISRTLFAVGDEKQSIYSFQGAVPEDFAAQGRSVSLRAEDAELKFERV 483

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR-----NTDILENKIPNI 352
             L        + ++ +  V         +   +      SD          +    +   
Sbjct: 484  SLNFSFRSAPDVLQAVDEVFARPEANRGLAGATVHEAIRSDAPGEVEIWDMLTPEVVEEP 543

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDE------------NKKKSALITADRNLAR 400
                  V  + A   R  A  IA  +R  LD              +    L+        
Sbjct: 544  DDWREPVDHLAAPAVR-LADQIAATIRHWLDRGEPIPGQNRRIMPRDIMVLVRKRDQFMP 602

Query: 401  RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
             +   L    + +  +  + L++ +    L +L   + + +D +++A+++K PL  +   
Sbjct: 603  ALSRALKNLSVPVAGADRLRLTSHIAIQDLMALGRFVLQPSDDLSLASVLKSPLFGWDDD 662

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLV---LDRIATQKNNTHVPHWQSRLSEEDK 517
              +         L                + V   L R     +   V  + +R+   D 
Sbjct: 663  RLFELAHPRGSGLTLFERLYQVSRGDAALAEVHKTLSRWRNMADTMPVFEFYARILSADG 722

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                LL       + P      ++       +           L+ +          L  
Sbjct: 723  ARRKLLAR-----LGPEAGDIIDEFQNYALSAERAGLPGLQAYLETLEAASPEIKRELDQ 777

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                  + ++ +     G+ +             L+D  +      ++  L         
Sbjct: 778  GRNEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAPKLIPFDFSNDS 825

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
                  L                    +R  +    L        +         GTR  
Sbjct: 826  PSVKGYLWQPNAGYQTGFTTAQIEKLKTRAEEEYRRLLYVGMTRAEDRLIICGYRGTRES 885

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
              T      +     +      ++      + N  +      +  R  D+       +  
Sbjct: 886  GETWHRLVEDALATKAETFVHPVLKVAARRYRNTPRGMVDIAEQDRTEDHALPSFPDEYR 945

Query: 758  KPFPPLEAQPRTYSFSEIKQLIND---PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
            +P  P    PR  + S    LI     P       +L                RGT  H 
Sbjct: 946  EPIKPEIGLPRPLAPSGASALIEADEEPPLDSFSPVLGPGNGTPAF----ALRRGTAIHM 1001

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            ++  L     +         + +I          P     I       I          +
Sbjct: 1002 LLQYLPDVPQDGRETLARDYLGRIAAD------WPETERQIAWQSVRTILDD--PTYAPV 1053

Query: 875  QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKL 932
             +   +  V I   + +      ++G  DRI + +   V I DYKT   P K  E     
Sbjct: 1054 FAEGSRGEVAIMGTIELGGRDHAVSGQIDRISVGED-RVLIIDYKTNRPPPKTIEAVPFA 1112

Query: 933  IDPQLSLEAAALK 945
               QL+L    L 
Sbjct: 1113 YRAQLALYRELLA 1125


>gi|307298414|ref|ZP_07578217.1| ATP-dependent nuclease subunit B-like protein [Thermotogales
            bacterium mesG1.Ag.4.2]
 gi|306915579|gb|EFN45963.1| ATP-dependent nuclease subunit B-like protein [Thermotogales
            bacterium mesG1.Ag.4.2]
          Length = 1025

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 118/1072 (11%), Positives = 295/1072 (27%), Gaps = 176/1072 (16%)

Query: 52   PTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE 111
            P+   ++  R  FI   G          ++     E F      S +    V N    LE
Sbjct: 38   PSGDHVRYFRENFISRVGTIPAS--RFLAMDQFAVEVFRRLNPNSIH----VGNHLMRLE 91

Query: 112  LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171
            +  ++                                   L ++I  ++     ++ + +
Sbjct: 92   IGDILDQMGKGELADSPVFVEY------------------LLEMIHDVKENR-GFDRIFS 132

Query: 172  LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231
             ++E            L+        R    N          +   + E + +     + 
Sbjct: 133  TEDEAVS--------VLESIYNELDSRFSRRNIFDTFDAYTRIEEHKDELINEEFGDTLF 184

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
            + G     PA      T+        +    +     ++++ I      I       +  
Sbjct: 185  LDGFHDFSPALKIFFKTIIPTYREVFITITQEPD-KESLFSNIDSILETIDEIAENSTD- 242

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
                       L+IKR   ++  + S     +  + S                       
Sbjct: 243  -----------LEIKRIFFEKSPSSSGLNGFKEALFS--------------------PGK 271

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLE-LTR 408
            +++    V+++   +   E   ++  ++ S+    +    +++++D NL  ++  + L  
Sbjct: 272  VEQNCDSVSVVVYPDIFAEVEGVSRFVKESIISACEPGDISIVSSDFNLYSKLLSDKLNE 331

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------------ 456
            +G+   I     L ++L    L   L           I  +                   
Sbjct: 332  YGVPHRIEGDEELHSSLSIRRLILPLETAVLGFPPEKIIAMADSGYGGEVDSSFIESAAA 391

Query: 457  ----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
                           +        R ++    + + ++ ++     +   +        +
Sbjct: 392  MSRIIYERPNMWLSLEKRRSSWDERLSRLVDLMKERRNAIISLADDELEMSAAEELDEAI 451

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
               D E+    V  I + +    + +         + I+   +L++         E +  
Sbjct: 452  ERIDSEVVPA-VQRIFRLLDSFRSLRKRDVGNYRKMFITWEKELSLIQSLTGYESEVKDR 510

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
                     +       +++        +  E+   +  L+  +       K++ + I  
Sbjct: 511  EMDAIVRFFEYTLPYLERLLYFMGKSSVSPKEYYRYLMLLLKHDKFPLSRNKANRVEIQS 570

Query: 633  TLESRLLNFDTLILGGLNE--GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
             + SR       +  G  +      +      F         +L   E+   +      +
Sbjct: 571  LINSRFSKKRMKVFVGFVDGAYPHVEMNPLYSFTQFGDSRPRDLLLDEETHERLNLYLSI 630

Query: 691  ANGTRHLIYTRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---YLDWTRKLD 746
            +     + ++      +  P + S +L+ +    G +     +K G+      +    + 
Sbjct: 631  STAEESVRFSLPESTIDGEPILPSPYLKNVAESSGCETTREGRKVGRRSGYIPELRASMS 690

Query: 747  YTTKQ------------------PHYKRPKPFPPLEAQPRTYSF---------------- 772
             +  +                  P             +  ++S                 
Sbjct: 691  QSELKISAAKFFLNEKWDLLKSFPPLSNLDTVLSNFRRDFSWSVQNRRRLEEVVGNVFSF 750

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            S +K   + P++ +   ++ LD  P    +    D G +FH+++ +    +       + 
Sbjct: 751  SRLKSYHDCPFSFFLSYVVGLDVSPEHVFELTPLDEGNIFHSVLKDFFSGKNRDWQDSLA 810

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE-HEEKIQSS----IEKIFVNIPA 887
              +K+ +       +    +         ++ H ++   E K  +               
Sbjct: 811  ENIKRHL------MHDSNIVFRFEFERLSEVLHEYITVREGKRPNFMGDNFIPYAFEKAF 864

Query: 888  KM----AIESIG-IHLTGFADRIDLLK-SGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
             +     ++ +  ++L G  DR+D+ + S  V + DYK G            + QL L +
Sbjct: 865  GIGETEPVKLLENLYLRGKIDRVDIDRSSSSVYLIDYKRG--------DSGDERQLLLYS 916

Query: 942  AALKA-----------GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
               +            G F  +  + V    +  +  +         KKK +        
Sbjct: 917  LVAEKLLEDESLDVAGGVFKTLTGKTVNKAAFRTISSEGGKVWEFAGKKKDNRIVKESDL 976

Query: 991  LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE------WREE 1036
            LK L E+   + +GE  F     +S             R +E      WRE 
Sbjct: 977  LKWLKEVHEGIYSGE--FTPSFTVSASKCYSC------RFSEIKRSITWREG 1020


>gi|291542613|emb|CBL15723.1| ATP-dependent nuclease, subunit B [Ruminococcus bromii L2-63]
          Length = 1112

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 106/930 (11%), Positives = 247/930 (26%), Gaps = 134/930 (14%)

Query: 150 KNLADII----DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
           K+L D++      ++      ++L ++             +   + S  +   LV  +  
Sbjct: 112 KSLVDVMLQTVSDLKKSSVTSDELRSVSMLVDDETLKTKLNETALISDTFDA-LVRQSYI 170

Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
            P+     L      +        II  G +G      +++ ++            LD  
Sbjct: 171 DPMDDLTRLNDILLNN-NVLRGYTIIFDGFSGFTMQQLKVVRSLIRDCTATYFTLTLDP- 228

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                        T+ +      S      L +      +  +   +L ++         
Sbjct: 229 ------------LTDGSEEVFATSQQTYKILKEYAKRDGVDIKAPIKLTDLHRFKNDNLA 276

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
           ++               +I    I  ++    ++ +  A +  +E   +A  ++  + E 
Sbjct: 277 LL-------------EQNIFRPHIEPLEIVPKNICVYNAVDMYDECEYVAGKIKHLVIEK 323

Query: 386 K---KKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                  ++I  D    R V  E L ++ I         +       ++ S+   +    
Sbjct: 324 GYLYSDISVICHDTEPYRGVLSEILEKYEIPYFSDEHADIDVKPVIRLVNSIFRCLIYDF 383

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
           D   +  L+K  L +F   E         +  V+    KN +                  
Sbjct: 384 DREDVLALLKSGLTEFSVEEISFFENYLFVWNVSGSAFKNKFVQN--------------- 428

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---V 558
                   S    E       L + +++ +        +KN    +       +      
Sbjct: 429 PKGYSDRFSDYDREVLAKVENLRESVIEPLLLFKENAKDKNGLEISKLFYALLEELKVPD 488

Query: 559 TCLQNVCLDEHRKLPNLWFEEE--GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
              +     E     ++  E+        ++  K              + ++++  I+  
Sbjct: 489 ALRRMYAEFERSYDKSVGAEQIRVWNIFMAVLDKTAAVIGTKAMTVKRYYELLSLQINAM 548

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +         + I      R+       L G  +G++P     +   S      L +  
Sbjct: 549 QLSDIPRTIDCVTITTAQRVRISKQKASFLIGCVDGIFPAIPHTSGIFSPFELKMLAMNE 608

Query: 677 AEKYIGQAAH-------DFEMANGTRH-LIYT-RSLRENNIPTIASRWLQRLLVLGG--- 724
            E     AAH        +         L  +  S          S  + +   +     
Sbjct: 609 IELGDDFAAHNNLETFMAYSCMTSASEFLSVSFYSSDITGTTYQPSEIVLQCKKVFKNII 668

Query: 725 ----------------------------------TDFFDNLKKRGQCYLDWTRKLDYTTK 750
                                              +    +  +   Y      L     
Sbjct: 669 AYDKFDFDGKKESMYALRPAFDTVADMIGKGKKVPESLLEIFAQNPEYSAKLDSLINAKD 728

Query: 751 QPHYKRPKPFPPLEAQPRTY--SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
           +  +K        +   +    S S++++     ++ +    L +      + + +    
Sbjct: 729 KVPFKIFDKKNAEKLFGKNLNISASQLEKFNLCRFSYFCNYGLNVRERQ--RAEINPMQY 786

Query: 809 GTLFHNIITELIKKR-INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH-----LFHK 862
           GT+ H I+     +    +         ++I+ ++  +  +    +              
Sbjct: 787 GTIVHYILERFFGEYTKEEYLSLEEDKFQKIVCAYLAEYAVKYFGEEQLESNSFTYRLKT 846

Query: 863 ISHSFL-----EHEEKIQSSIEKIFVNIPAKMAIE--------SIGIHLTGFADRIDLLK 909
           I  + +       EE  QS        +     I            I + G  DR+D++ 
Sbjct: 847 ILDNVMYLMKHIMEELSQSEFFVADCELKIGEDIPSYTIVLPDGHKIAVCGSVDRVDIMP 906

Query: 910 SGF---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL 965
                 + I DYKTG    K       I+ Q+ L   +++A    +      A + Y+  
Sbjct: 907 RADITYLRIIDYKTGTKQFKLSDILYGINLQMLLYLHSIEASGCDKYGEIVPAGILYM-- 964

Query: 966 KQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                     +     S D+L ++  K L 
Sbjct: 965 ---PATVPYISSDSLKSIDKLPDELNKKLK 991


>gi|110798865|ref|YP_694493.1| ATP-dependent nuclease, subunit B [Clostridium perfringens ATCC
            13124]
 gi|122959148|sp|Q0TV47|ADDB_CLOP1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|110673512|gb|ABG82499.1| ATP-dependent nuclease, subunit B [Clostridium perfringens ATCC
            13124]
          Length = 1158

 Score =  146 bits (367), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 129/907 (14%), Positives = 262/907 (28%), Gaps = 143/907 (15%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            + LK     +  RL E         Q+ L+  + +         I I   +   P    +
Sbjct: 156  EELKDVFNEFNSRLHE-GYVDE-EDQLLLLNEKLDGCSLYDGAEIWIDEFSSFTPNQLSV 213

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            +  +        +   +D        + +   + N               L  L+    I
Sbjct: 214  IGKLLKRAKSVNITLSIDEVNSPKGESDLFVATKNTEK-----------RLMNLIQEEGI 262

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                   L    +  +  +  ++           +                + + L  A+
Sbjct: 263  AFNGYINLNEDISYRFKENKELAHIERQLYAYPFKQYRGKN----------NSLRLYRAN 312

Query: 366  NEREEAISIAIALRMSLDE---NKKKSALITADRN-LARRVKLELTRFGINIDISAGIPL 421
            N  +E   +A  +   + E     K  ++I  D +   + V      + I   I   I +
Sbjct: 313  NNYDEIEFVAKDILRLVREKQYRFKDISVICRDVDNYEKVVSAIFAEYEIPYYIDKKIDI 372

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            ++      + S ++ I K   + ++   +K  L K        +   + LE   L     
Sbjct: 373  ASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRG-IEGAELIDELENYVLAYGIK 431

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                M+    V    +  K           +SEEDK+    L D     +TPL  +    
Sbjct: 432  GKKWME--EWVNYSSSILKEEE--------ISEEDKQRLERLNDIRENIVTPLDEFNKQC 481

Query: 542  NSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNLWFEEEGKT---------LSSLFSKI 591
                     +    +   + L  +   +         +   +             +  + 
Sbjct: 482  KGKKTLKEFATILYEFLDSKLDVMDTIDKYVDYFKENDMAIEAKEYYEVRDIFIDVLEQA 541

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            ++       +  E++ ++   +    +         + I      +      L + G+N+
Sbjct: 542  VDVLGNEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVND 601

Query: 652  GVWPKNTAKNPFLS---RVMQSDLNLKTA---------EKYIGQAAH------------- 686
            GV P  + +   LS   R +  +  +  A         E+++   A              
Sbjct: 602  GVLPSASKEEGILSDNDREILLEKGISLASDTRTKIFEEQFLVYTAFTIAEEYLVVTYPL 661

Query: 687  -DFEMANGTRHLIYTRSLRENNIPTIAS-----------------RWLQRLL-----VLG 723
             DFE  +    +I  R  +        S                   L  L+        
Sbjct: 662  ADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVDDKYEKISAKLPTLNELMIAIRKNYD 721

Query: 724  GTDFFDNLKKRGQCYLD---WTRKLDYTTKQPHY---------KRPKPFPPLEAQPRTYS 771
            G +  D  K     YL    W  +++Y  K   Y         ++ K          + S
Sbjct: 722  GAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYEDNKNKISLS 781

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT--- 828
             S +++    P+A Y +  LK         +    D G+  H I+ E   +   K+    
Sbjct: 782  VSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDLKWS 839

Query: 829  ----PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSI 878
                    +++  ++D+  +      L       +    F +I      +  E+  +S  
Sbjct: 840  DLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKRSDF 899

Query: 879  EKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGDNP- 924
            E     +           K+ +      +L G  DR+D L   G   + I DYKTG    
Sbjct: 900  EIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGSKKF 959

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
                    +  QL +   AL   S + + +      + Y R+      D I   K   + 
Sbjct: 960  DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGDLTE 1014

Query: 984  DELSEKS 990
            +E+  + 
Sbjct: 1015 EEIKSEV 1021


>gi|259046746|ref|ZP_05737147.1| exonuclease RexB [Granulicatella adiacens ATCC 49175]
 gi|259036642|gb|EEW37897.1| exonuclease RexB [Granulicatella adiacens ATCC 49175]
          Length = 1190

 Score =  146 bits (367), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 120/966 (12%), Positives = 251/966 (25%), Gaps = 132/966 (13%)

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
            L L  + A      + L+ +++  ++   + ED  +                  I  +Y+
Sbjct: 116  LLLFKNEARHKGFLEQLSKVMNEFQSGGIEIEDFSSFFEATNPTENEKRLKEFGIIYRYY 175

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
            T  L   +          L    A      +   I I        A   ++  +      
Sbjct: 176  TNALK-QDFVHQEESYAQLCSVIAS--KDLSNTFIAIDEMVTLSKAEMEVIEALVGSGAT 232

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
                  L  +      N I +                   L++ ++        +    N
Sbjct: 233  VEFHATLTTYGVHTAKNEIGDSLFTSNRILLE-------RLSRWINR-GDDLARIIEWEN 284

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
              +        + + +L  +    +     E KIP        +   +  +EREE     
Sbjct: 285  TESIFDEEFKEVEQFWLETNGGLPKVKRTPEQKIP-----LQKITFTKYTDEREEYQETF 339

Query: 376  IALRMSL---DENKKKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILT 431
              ++  +   +   K   ++  +           L ++ I   I     +       +L 
Sbjct: 340  AQIKRMVQTGNVRYKDIQILGRNLEENHLFLESLLKQYAIPGFIDLSDSMEHHPIIQVLD 399

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPE--------KYLSRAKNALELVALRGNKNSY 483
            +L         +  I +L++     +   +        +   +  +  E V L      Y
Sbjct: 400  ALFAIWQYDWRYADIMSLLRSEYVLWHKDDETSLKDQLQAFRQQLDETETVILANGYEGY 459

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
               + K            +      Q+  +      A  L + +   +  L  +K  + S
Sbjct: 460  QWTNGKPWSYV---EDSIDEDSKVEQTDKNTRVLLKAEQLRNELTSIL--LPAFKKIEQS 514

Query: 544  TCGNLSISDWTKLTVTC--------LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
            T    ++S   +L +T          ++V  +E         E+       L  + I   
Sbjct: 515  TTTKEAVSVLYQLLLTLGVDQSFIYWRDVAAEEGDVETARRQEQVWTEFIRLLDEYIYIF 574

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                 +   ++ ++    +             L I G    R          GL++GV P
Sbjct: 575  GEKSFDWETFMMLLHTGFEQTHYNLAPSTLDELTITGMDSVRYTPKKITFAVGLSQGVMP 634

Query: 656  KNTAKNPFLSRVMQS---------DLNLKTAEKYIGQAAHDFEMAN--GTRHLIYTRSLR 704
            +N  +   L+   +               T  +        F       T HL  + ++ 
Sbjct: 635  RNIDETGLLTDDERELFSNHLDSGRFLAPTTGQLQSVEPFVFYQLLMSATEHLYLSCAIS 694

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD-----------------WTRKLDY 747
            ++    + S ++QRLL     +  D    R                          K   
Sbjct: 695  KDGKEQLVSNFIQRLLKHYELEEIDGSFNRQNRLEQGDFVVPYELFTTLLLKMRENKFKE 754

Query: 748  TTKQPHYKRPKPFPPLEAQPRT-------YSFSEIKQLINDP------------------ 782
              +     +  P         +        S   +      P                  
Sbjct: 755  KEEIDFLWKLIPHLLKVDATFSANYHALLASVFRLNVASKLPLSLAQELYGNQLNLSTSQ 814

Query: 783  ----YAVYARRIL--KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
                Y       L   L      + +    + G  FH    + IK+   +     +  ++
Sbjct: 815  IETYYKDPFSHFLQYGLRLKERQEFELSPANTGEYFHEFFDQFIKELNARGISLRDLTLE 874

Query: 837  QIID---SHFEKENLPPHIDIIWRHLFHKISHSFL---------EHEEKIQS-SIEKIFV 883
            Q +      F +    P   I+            L           +++  +   +    
Sbjct: 875  QKLAIEKDIFNRMKDNPKFAILASSRRLNFVQGLLHQTLMQTTNALQKQALALETKPWMT 934

Query: 884  NIPAK------MAIESI---GIHLTGFADRIDLL-KSGFVD--ITDYKTG-DNPKKETAQ 930
             +         + I       IHL G  DRIDLL     +   I DYK+     +     
Sbjct: 935  EVVFGTSGNYPIHIPIGHNQSIHLRGKIDRIDLLQADNGIFNGIIDYKSSEQKFEIAKLI 994

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
              +  QL       +    S+           YI +      +   + K+  + D+  ++
Sbjct: 995  AGVQIQLLTYLKVSEEIIRSEKGVIPTPLEASYIHV-----HNPKFSIKEVPTEDKFMQE 1049

Query: 990  SLKNLI 995
              K   
Sbjct: 1050 WTKAFK 1055


>gi|269127954|ref|YP_003301324.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
 gi|268312912|gb|ACY99286.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
          Length = 1128

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 106/1059 (10%), Positives = 246/1059 (23%), Gaps = 166/1059 (15%)

Query: 46   SVTIYVPTKRAIQELRSEF---------------IEITGKKSTI--LPIIKSLGDVVEEK 88
             V     T++A  EL +                 ++  G ++ +   P + +        
Sbjct: 62   RVLGLTFTRKAAGELATRIRRRLDQLRDRLPQDELDRLGGEAALDGEPAVSTYHSYA--- 118

Query: 89   FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
              A L   + L   +    RL+  A +      ++ D                    + L
Sbjct: 119  --ARLFGDHALRAALEPTMRLISPA-MAWQLAARVVDDYDGAMDGIDWRPDTVVRAVLDL 175

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMW---------------WLLAADFLKIASK 193
            +  LA+ +          ED+  +       +                    + L    +
Sbjct: 176  SGELAEHLR-------TPEDVREIGRRLRAQFDALPGRRGAAKNVLATQEIRERLLPLVE 228

Query: 194  YWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMST 248
             +    +E              R   +H     + +     +++     +  A   L+++
Sbjct: 229  AYQRAKIEREVLDYGDQVALAARIARDHPDVGMIERSRYAVVLLDEYQDTSHAQLVLLTS 288

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +     G  V    D       W      +      +   +      +A +      +R 
Sbjct: 289  LFG--GGHPVTAVGDPCQSIYGWRGAGSGNLTGFPEDFPLAPAVPSRVAAVPPPRPGRRP 346

Query: 309  DVKRLGNVSNEM----YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                    +  +         ++  +            ++   +    ++    V     
Sbjct: 347  PRHARPAPTATLSISWRNGERILEVAARIQQGLRADTANVPRLRPGEGRRGRGRVECALL 406

Query: 365  DNEREEAISIAIALRMSLDENKK----------------KSALITADRNLARRVKLELTR 408
                 EA  IA  +R     + +                  A++   R+    ++  L  
Sbjct: 407  PTVTAEAEHIAERIRRLRAADPELAPDGLPWDEGPLKYSHIAVLVRRRSQIPPLRKALEE 466

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-RA 467
              I +++     L T      + + L  +       ++A L+  P  + G  +     R 
Sbjct: 467  RDIPVEVVGLGGLLTVPEVQDVVATLRVVHDPTAGASLARLLTGPRWRIGPRDLVALGRR 526

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
               L     R      D  +L+               V    ++ +    +    L D  
Sbjct: 527  ARRLASENTRDITPPPDASELRPEPAANAEETDPLRQVVIELTQETGSLVDALDDLGDPS 586

Query: 528  LQCITPLVTYKTNKNSTCGNL-----SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
                  L   +                + D        L        R   +        
Sbjct: 587  AYSPEGLARLRRLAAELRTLRSQVGLPLPDLVAEVERTLGLDIEVAARSGLDPAGARADL 646

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDG-ETVKPKIEKSSTLFILGTLESRLLNF 641
                  +      S           +     +       ++ +S ++ +L    ++ L +
Sbjct: 647  DAFIETAASFAEESENPTLGAFLAYLKAAESEEFGLPAGRVSESDSVKLLTVHAAKGLEW 706

Query: 642  DTLILGGLN--------------------------------------EGVWPKNTAKNPF 663
              +++ GL                                       +         N  
Sbjct: 707  PVVVVPGLCYLPSGSGRPVKGSIFPSPPQQSTRWTDNPRLLPFELRGDYEKGNLPRLNGL 766

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN--NIPTIASRWLQRLLV 721
                +    +         +    +       HL+     R      P   S +L+ +  
Sbjct: 767  TKADLDRFKDECADRDLREERRLAYVAVTRASHLLIATGHRWGATARPLHPSPFLEEIRQ 826

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ------PHYKRPKPFPPLEAQPRTYSFSEI 775
               T     +             L    +       P  +R           R      I
Sbjct: 827  ACETGAGRVVSWADPPEEGAANPLQAEAEPGRWPATPEGRRYAAIVEGAEMVRDAMVGRI 886

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT-------LFHNIITELIKKRINKNT 828
                 D     A R     +    +      DRG             +T      ++++ 
Sbjct: 887  APWAGDDGLTEADRRRMTAWARDVELLLAERDRGRGGDVLQVELPAKLTVSTLVALSRDP 946

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRH--------------------------LFHK 862
             E+   +++ +                W                            +  +
Sbjct: 947  QEVARSIRRPMPRPPAPYARRGTAFHRWLESRWGQQRLLDPDELPGAADEGAADDSMLTE 1006

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
            +   F E E   +     + + +  +  +      L G  D +     G  ++ D+KTG 
Sbjct: 1007 LQRRFEESEWASR---RPLDIEVTFETVLGDR--VLRGRMDAVFTAPDGGYEVVDWKTGR 1061

Query: 923  NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
             P  +   +    QL+    A      + +   KV+  F
Sbjct: 1062 PP-ADEDFRHAAVQLAAYRLAWAD--LAGVPLEKVSAAF 1097


>gi|302874682|ref|YP_003843315.1| ATP-dependent nuclease subunit B [Clostridium cellulovorans 743B]
 gi|307690705|ref|ZP_07633151.1| ATP-dependent helicase/deoxyribonuclease subunit B [Clostridium
            cellulovorans 743B]
 gi|302577539|gb|ADL51551.1| ATP-dependent nuclease subunit B [Clostridium cellulovorans 743B]
          Length = 1152

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 108/940 (11%), Positives = 245/940 (26%), Gaps = 127/940 (13%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHAL--KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                 L DI+  ++  +   E L  L  K E            + +  +     + E   
Sbjct: 116  GFVSILGDIVSELKNYDITTETLKELYSKIEDNKG-LKDKLYDISLIYEKLRAAMEEKYL 174

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                   I   + +    +      +     +        ++  +        +      
Sbjct: 175  DLEDELSILYGKLDEYRDINNAY--VYFDEFSSFTTLQYNIIEKILLKAKVLSISLIHSS 232

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG--NVSNEMYG 322
                     I   S     S +        +   +   +DI R+    L    +  +   
Sbjct: 233  QY-------IKSNSDGKIESYSNEGDVFSVTSKTINKLIDIARKINSPLEYKEIEYKKIK 285

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            R        L  +     + +         ++    + +    N   E   +A  +  ++
Sbjct: 286  RFNNQELIHLEKNLYAYPHEEY--------EEKTKKINININVNSFNEIEEVAKGILEAV 337

Query: 383  DEN---KKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             +     +  A++T + +    +       + I   I     + +      L S L  I 
Sbjct: 338  RDRDFRYRDIAVVTRNLDSYDEMIKAIFNEYNIPYFIDKKKEIESNKLIVFLKSALEIIS 397

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
            K     A+   +K  L      +  L         +  +                     
Sbjct: 398  KNWSEEAVFKYLKSDLTSLSREQVDLLENYALANGIRGKRKWTKETWDY----------D 447

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                      +  + EE  EL   +V+ +L+     ++    K  +              
Sbjct: 448  FPKELSGGKEKEEILEEINELKAQVVNPLLKLYDISISKAKVKEISKIIFQFLQQVGAFE 507

Query: 559  TCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                 +          L   + +    +      ++E     + +  E+  I++   +  
Sbjct: 508  KIENWIQGFRTEGKQLLANEYSQIWNLIIETLDMLVEVLGDAEMSLEEYEKILSIGFEEN 567

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS------ 670
             +         + +     S+      L + G+N+GV+P++ +    L+   ++      
Sbjct: 568  KMGLIPATIDQVLVGSVERSKTNGVKILYIIGVNDGVFPRSVSDEGILNDEDRTVLMENG 627

Query: 671  -DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE-NNIPTIASRWLQRLLVL----- 722
              L   T      +    +E        +I +  + +        S  + RL  +     
Sbjct: 628  ITLASTTRAAAFEEQFLVYETFTAASDEIIISYPIADFEGKALRPSILVSRLKNIFKKIT 687

Query: 723  ---------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--- 770
                             +    Q       K++   +   Y         + +       
Sbjct: 688  IKSDILDVVSMEKVTLPMPTFNQMISAIRAKME-GAEISEYWSEVYKWYHDQEEYKLLKD 746

Query: 771  ----------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
                                        S S  +  +N P++ +    LK         +
Sbjct: 747  RIMRGFYYSNQGVIKNKEKIKKLYGEDYSVSRFETYVNCPFSYFVNYGLKAKERK--LYN 804

Query: 803  PDRTDRGTLFHNIITEL-------IKKRINKNTPEINHLMKQIIDSHFEKENL---PPHI 852
                D+GT  HN+I               N +         +++    + +N      + 
Sbjct: 805  LTTLDKGTFLHNVIENFCISVIKEHASFENIDEDFCQQFSDKVLKETLKIDNSVLNSSNR 864

Query: 853  DIIWRHLFHKISHSFLEHEEKI--QSSIEKIFVNIPAK-------MAI---ESIGIHLTG 900
                 +   K+    L    +    S  + I              + I   +     + G
Sbjct: 865  YQYMANRLKKVLVRTLITITRQINNSDFKPISFEAEFDDNREFRPIEISLKDGTKAKIKG 924

Query: 901  FADRIDLL-KSGFV--DITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCR 955
              DRID+L K   +   I DYK+       +        QL +   A L      + +  
Sbjct: 925  KIDRIDILKKDDELYIRIIDYKSSSKTINLKDVYYGAQLQLLVYLDAILSYEEEEKHEKS 984

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
                +FY ++      + I + K+K S +E+ E   +NL 
Sbjct: 985  MPGAIFYYKI-----ENPIVSKKQKLSDEEIEEAITENLK 1019


>gi|330959507|gb|EGH59767.1| hypothetical protein PMA4326_13229 [Pseudomonas syringae pv.
            maculicola str. ES4326]
          Length = 898

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 106/797 (13%), Positives = 228/797 (28%), Gaps = 93/797 (11%)

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +    E      +   +     QY     L  L +K      +      +   
Sbjct: 117  MDTDRFRFKEEFEAFFQWKAQLDSVCGAKQYVFRAHLPTLLLKAIKAGDVQAPERVIIVG 176

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
             + ++ +      +       +        K      L+ + N   E + +A  +   L 
Sbjct: 177  MLSLNPAEKAVFEALKDLGTDVVIVAAEGDKATP--RLVRSHNNASEMLEVAQWVSNHLL 234

Query: 384  ENKKK-------SALITADRNLARRVKLELTRF---------------GINIDISAGIPL 421
                        + ++   R+    +   L+                     DIS+G  L
Sbjct: 235  PFVDTPHAAPSLAIVVPDIRSYKGPLLDALSLHTSPGSLMPAGTDGETRAPWDISSGATL 294

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
             +         LL+      D    + +++         E       +            
Sbjct: 295  GSRPMVRAAMDLLSITPDKADAETFSRVLRSRWIAGHMGESATRALLD------------ 342

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                       L        N     +   +     +            +  LV+ +   
Sbjct: 343  -----------LWFRDNLGLNMGGKDFLRAIGSYKGDAVPDFRKRFGGLLEKLVSGEQ-- 389

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                 N   S+W       L ++      +L +  F+       +L              
Sbjct: 390  -----NRYPSEWADHFTVALADMGWPGQSELDSANFQTLNAWAEALAMFRTLDAQLGTVQ 444

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                   +  ++D    +P+I   + + ILG  ++  L+FD L + G +  V P     +
Sbjct: 445  YERAFMWLREVVDTRQFQPRISHLAPVSILGYEDAIGLSFDALWVVGASNNVLPGRAEPS 504

Query: 662  PFLSRVMQSDLNLKTA--EKYIGQAAHDF-EMANGTRHLIYTRSLRENNIPTIASRWLQR 718
            PF+   +Q D  +  A  E  +  A      + + +  +  +         +I +  L  
Sbjct: 505  PFIPTELQIDAGISDASSEGMLEYAQSVVGALLSCSADVSVSCPSHNEKGASIGASELFG 564

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                        L+ +G    D   +LD    +   +       +E           K  
Sbjct: 565  SW----PATAPTLETKGDFLDDMMGQLDRNNYEQ--EEVPAVSDIELTDIKGGVRIFKDY 618

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI------KKRINKNTPEIN 832
               P+  + R  L+ +  P      D   +GT+ H ++ +        K     +  E+ 
Sbjct: 619  AESPFFSFVRNRLRANMFPQPIIGLDPRIQGTMIHLVLEKFWTEVVTSKALKAFSVEELK 678

Query: 833  HLMKQII----DSHFEKENLPPHIDI--IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
              ++       +    K      + +  + +     +S  +LE E+K +   E I     
Sbjct: 679  TKVQHHTQLASEDLLYKLIWRYGLKLIMLEQRRIVDLSIEWLELEKKREYEFEVIGFEER 738

Query: 887  AKMAIESIGIHLTGFAD---RIDLLKSGFV---DITDYKTGDNPKKET--AQKLIDPQLS 938
             ++ +  + + ++   D   RI L ++  V    + DYKTG   +  +  A  L +PQL 
Sbjct: 739  HEIVVGQVPLTVS--LDRRERIFLDEAQTVSRCVVFDYKTGQEMRMNSLNASTLTEPQLP 796

Query: 939  LEA----AALKAGS-FSQIDCRKVAN--LFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
            + A     ++++      I   +V    L +   +  F    +   K +    + S+K  
Sbjct: 797  IYATKVDLSVESVEPIDGIVLAQVNQKSLGF-HARSNFSASLVEGKKARQEDVDTSDKWE 855

Query: 992  KNLIEIVTLLQNGEQPF 1008
                     L +    F
Sbjct: 856  AQKDAWNRQLDSMSAGF 872


>gi|15645703|ref|NP_207880.1| hypothetical protein HP1089 [Helicobacter pylori 26695]
 gi|2314241|gb|AAD08136.1| predicted coding region HP1089 [Helicobacter pylori 26695]
          Length = 778

 Score =  145 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 63/384 (16%), Positives = 132/384 (34%), Gaps = 50/384 (13%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +    AS  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEITLSYIESETSK---ASNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +                        ++S S +   +
Sbjct: 494 NLHIEPIKDAYTLFAPSPLKDYQEEEIKAAIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +   + +  G+L H ++ E  +   +K    +   +  ++
Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSAVGSLLHELLKEAYE--KDKTPHALEERLIWLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    +EN+ P   +    +  KI  +F + E +   + I  + +    +  I+  G+  
Sbjct: 595 E---TRENITPKERLDTLVVLKKI-QAFYKKERERFNAEITILDLEKSFETIIQ--GVIF 648

Query: 899 TGFADRIDLLKSGFVDITDY------------KT--GDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID      + + DY            KT  G     E AQ   D Q+++ A AL
Sbjct: 649 KGRIDRIDKTADNEIILLDYKFKSDLKLDSMSKTQRGGLSPIEIAQISTDYQMAIYAFAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQK 968
           K   +      +    F+  L++ 
Sbjct: 709 KNLGYK-----EPIKAFFYDLRKG 727


>gi|182625393|ref|ZP_02953166.1| ATP-dependent nuclease subunit B [Clostridium perfringens D str.
            JGS1721]
 gi|177909390|gb|EDT71842.1| ATP-dependent nuclease subunit B [Clostridium perfringens D str.
            JGS1721]
          Length = 1158

 Score =  145 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 129/907 (14%), Positives = 262/907 (28%), Gaps = 143/907 (15%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            + LK     +  RL E         Q+ L+  + +         I I   +   P    +
Sbjct: 156  EELKDVFNEFNSRLHE-GYVDE-EDQLLLLNKKLDGCSLYDGAEIWIDEFSSFTPNQLSV 213

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            +  +        +   +D        + +   + N               L  L+    I
Sbjct: 214  IGKLLKRAKSVNITLSIDEVNSPKGESDLFVATKNTEK-----------RLMNLIQEEGI 262

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                   L       +  +  ++           +                + + L  A+
Sbjct: 263  AFNGYINLNEDIPYRFKENKELAHIERQLYAYPFKQYRGKN----------NSLRLYRAN 312

Query: 366  NEREEAISIAIALRMSLDE---NKKKSALITADRN-LARRVKLELTRFGINIDISAGIPL 421
            N  +E   +A  +   + E     K  ++I  D +   + V      + I   I   I +
Sbjct: 313  NNYDEIEFVAKDILRLVREKQYRFKDISVICRDVDNYEKVVSAIFAEYEIPYYIDKKIDI 372

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            ++      + S ++ I K   + ++   +K  L K        +   + LE   L     
Sbjct: 373  ASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRG-IEGAELIDELENYVLAYGIK 431

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                M+    V    +  K           +SEE+K+    L D     +TPL  +    
Sbjct: 432  GKKWME--EWVNYSSSILKEEE--------ISEENKQRLERLNDIRESIVTPLDEFNKQC 481

Query: 542  NSTCGNLSISDWT-KLTVTCLQNVCLDE---------HRKLPNLWFEEEGKTLSSLFSKI 591
                     +    +   + L  +   +            +    + E       +  + 
Sbjct: 482  KGKKTLKEFATILYEFLDSKLDIMDTIDKYVEYFKENDMAIEAKEYSEVRDIFIDVLEQA 541

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            ++       +  E++ ++   +    +         + I      +      L + G+N+
Sbjct: 542  VDVLGNEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVND 601

Query: 652  GVWPKNTAKNPFLS---RVMQSDLNLKTA---------EKYIGQAAH------------- 686
            GV P  + +   LS   R +  +  +  A         E+++   A              
Sbjct: 602  GVLPSASKEEGILSDNDREILLEKGISLASDTRTKIFEEQFLVYTAFTIAEEYLVVTYPL 661

Query: 687  -DFEMANGTRHLIYTRSLRENNIPTIAS-----------------RWLQRLL-----VLG 723
             DFE  +    +I  R  +        S                   L  L+        
Sbjct: 662  ADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVNDKYDKISAKLPTLNELMIAIRKNYD 721

Query: 724  GTDFFDNLKKRGQCYLD---WTRKLDYTTKQPHY---------KRPKPFPPLEAQPRTYS 771
            G D  +  K     YL    W  +++Y  K   Y         ++ K          + S
Sbjct: 722  GADIEEYWKYVYDWYLREPKWKERIEYVKKGLEYTNLENNISKEKAKKLYEDNKNKISLS 781

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT--- 828
             S +++    P+A Y +  LK         +    D G+  H I+ E   +   K+    
Sbjct: 782  VSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDLKWS 839

Query: 829  ----PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSI 878
                    +++  ++D+  +      L       +    F +I      +  E+  +S  
Sbjct: 840  DLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKRSDF 899

Query: 879  EKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGDNP- 924
            E     +           K+ +      +L G  DR+D L   G   + I DYKTG    
Sbjct: 900  EIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGSKKF 959

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
                    +  QL +   AL   S + + +      + Y R+      D I   K   + 
Sbjct: 960  DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGDLTE 1014

Query: 984  DELSEKS 990
            +E+  + 
Sbjct: 1015 EEIKSEV 1021


>gi|269796045|ref|YP_003315500.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098230|gb|ACZ22666.1| DNA/RNA helicase, superfamily I [Sanguibacter keddieii DSM 10542]
          Length = 1111

 Score =  145 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 121/1048 (11%), Positives = 260/1048 (24%), Gaps = 158/1048 (15%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEI-------------TGKKSTILPIIKSLGDVVEEKFTA 91
              V     T++A  EL                    +   +   P I +           
Sbjct: 67   QEVLGLTFTRKAAGELSDRVGRRLRQLRRSRAGSGGSALDALDRPTISTYNSYAASLVGD 126

Query: 92   DLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
              L          +S        + L+  W   L          + +    +  +   L 
Sbjct: 127  HGLRIGREPGARLLSEASSWQVASDLVESWHGDLGTDAAVSTVVAAVLDLSNALSEHLLT 186

Query: 150  -----KNLADIIDIIET------EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                 + +A +++ I +            DL  L               L    + + +R
Sbjct: 187  VAEAREQVARLVEQITSTPFGGKRRSLHADLGKLARSLGERHA------LLEVVEAFQQR 240

Query: 199  LVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
               ++A           +   E        +     +++     +  A  RL+S++    
Sbjct: 241  KRAMDALDFGDQVSLAAQLAVEVDAVAAGERARYAVVLLDEYQDTSYAQIRLLSSLFG-- 298

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
            +G  V    D +     W   +                   ++ +L          +   
Sbjct: 299  DGHPVTAVGDPNQSIYGWRGASASGPARFPDQFRDREGRPAAVHRLSTSWRNDLAILDVA 358

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
               S  +Y                     + L +  P        V  + +    EE  +
Sbjct: 359  NTTSRPLYL----------------ADPDNSLPSLEPRPSAGLGSVHGVYSATVEEEGAA 402

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            IA  +    +     +A++   R+    ++  L + G+ +++     L TT     L +L
Sbjct: 403  IAEFVAKRWEPGTTTAAVLCRARSQFPAIEAALRKRGLPVEVVGLGGLLTTPEVVDLVAL 462

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            L  +   +   ++  L+  P    G  + +   +++A      R ++     +  +  ++
Sbjct: 463  LEVVHDPSRGDSLMRLLTGPRLNLGAADLHALASRSAELGRRNRADRPVEGDVTDERSIV 522

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
            D +        V       S+        L   + +                      D 
Sbjct: 523  DALDDLPAEGWVGPDGRSFSDAGWGRLRSLAGMLRELRALTYLSLPELVDRAERALGLDI 582

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA-NAIEWIDIITRL 612
                V           R   +            + +   +T         + W+    + 
Sbjct: 583  EMALVAARARDDAPSTRPTADPRGRAHLDAFRDVAATFADTSQLATLGAFLAWLSTAQQR 642

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS------- 665
              G            + ++    S+ L +D + + GL +G +P                 
Sbjct: 643  ERGLDRPQGAPDPEAVQLITVHASKGLEWDVVAVPGLVDGAFPSTRTTGDKGPTSSGWLT 702

Query: 666  ------------RVMQSDLNLKTAEKYIGQAAH--------------------DFEMANG 693
                             +L+L  A+      A                            
Sbjct: 703  GLGQLPFPLRGDARDLPELSLAGADDSAELNARLVDFRERCGEHEVAEERRLAYVAFTRA 762

Query: 694  TRHLIYTRS-LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
               L+ T +  R    P+  S +L  L   G    F   ++      +    L      P
Sbjct: 763  RSDLLLTGAWWRSATKPSTPSLFLTELHEAGVLAEFTVAEQPEPGTSNPREDLTPEALWP 822

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIK---QLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                P   P   A       + ++   +L+     +    ++ +   P   +     D G
Sbjct: 823  PVDEPADGPEGSAAEAADGSATLREPLELLRRSRDLVLDALVDVAQHPASTEPVLARD-G 881

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH------------------ 851
            T    +   L+ +R+ + T          + +    E                       
Sbjct: 882  TDLTELSEILLAERLTRRTAVTAMEFPAHVSASGLVEIARDRDAYALALRRPVPRQPSVH 941

Query: 852  -----IDIIWRHLF-----------------------HKISHSFLEHEEKIQSSIEKIFV 883
                    +W                             ++      E  + S +  + V
Sbjct: 942  SRRGTAFHLWVERQYGSTSLFDLDDMPGADDDLVDGDTALADLQRTFEASVWSGLVPLEV 1001

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSG--------FVDITDYKTGDNPKKETAQKLIDP 935
             +     I   G+      D + L             V + D+KTG  P    A +  + 
Sbjct: 1002 EVAIDTMIA--GVITRTRIDAVFLDPEQPGGPDRAPGVVVVDWKTGRAPTDREAARAREV 1059

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYI 963
            QL++   A     +S      V+  FY 
Sbjct: 1060 QLAVYRIAWSQ--WSGTPLEDVSAAFYY 1085


>gi|239833145|ref|ZP_04681474.1| double-strand break repair helicase AddA [Ochrobactrum intermedium
            LMG 3301]
 gi|239825412|gb|EEQ96980.1| double-strand break repair helicase AddA [Ochrobactrum intermedium
            LMG 3301]
          Length = 1195

 Score =  145 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 98/916 (10%), Positives = 230/916 (25%), Gaps = 75/916 (8%)

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE 133
            +L  +  + +  ++     + +    +         L+L R   +   +  + +      
Sbjct: 254  LLADLWPIPEFSDDALDLIMSIQKGASRAQDFA---LQLRRFDKVTGQRDREAVLRAAFL 310

Query: 134  SPLSLPISPANAIWLAKN--LADIIDIIETEEKKWED-LHALKNEKYGMWWLLAADFLKI 190
                 P S +     A    L D  +  +    + E  L  LK  +     L A   +  
Sbjct: 311  KSTGEPKSGSYVCSAAVKKLLPDFEEDFDAAAARVEQGLDRLKELRLVRLNLAALTLVDN 370

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
              + + +   +             +   A        ++ +      I++  +  + P  
Sbjct: 371  LLQRYHDLKRKRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 430

Query: 243  ARLMS--------TVANHPNGAIVLPGLDCHIPTAIWNTI--TEKSTNITSSNTTYSTHP 292
             +++          +        +    D       +      + +    S +       
Sbjct: 431  WQVIRMLSEEFFSGLGQRNISRTLFAVGDEKQSIYSFQGAVPEDFAAQGRSVSLRAEDAE 490

Query: 293  Q-YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR-----NTDILE 346
              +    L        + ++ +  V         +   +      +D          +  
Sbjct: 491  LKFERVSLNFSFRSAPDVLQAVDEVFARPEAHRGLAGATVHEAIRADAPGEVEIWDMLTP 550

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD------------ENKKKSALITA 394
             ++         V  + A   R  A  IA  +R  LD              +    L+  
Sbjct: 551  EEVEEPDDWREPVDHLAAPAVR-LADQIAATIRHWLDSGEIIPGQNRRIMPRDIMVLVRK 609

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                   +   L    + +  +  + L++ +    L +L   + + +D +++A+++K PL
Sbjct: 610  RDQFMPALSRALKNLSVPVAGADRLRLTSHIAIQDLMALGRFVLQPSDDLSLASVLKSPL 669

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              +   + +         L                + V   ++  +N           + 
Sbjct: 670  FGWDDDQLFELAHPRGSSLTLFERLYQVSRGDAALAEVHKTLSRWRNMADTMPVFEFYAR 729

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                 A      +L  + P      ++       +           L+ +          
Sbjct: 730  IL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLDAASPEIKRE 787

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
            L        + ++ +     G+ +             L+D  +      ++  L      
Sbjct: 788  LDQGRNEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAPKLIPFDFS 835

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            +        L                +   +R  +    L        +         G 
Sbjct: 836  DGNPPVKGYLWQPNAGYQTGFTAAQIDKLKTRAEEEYRRLLYVGMTRAEDRLIICGYRGA 895

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
            R    T      +     +      ++      + N  +     +D  +  D+       
Sbjct: 896  RESGETWHRLAEDALAAKAETFVHPVLKLAARRYRNTPRGMVEIVDQDKTEDHALPSLPR 955

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLIND---PYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
               +P  P    PR  + S    LI     P       +L                RGT 
Sbjct: 956  DYLRPIKPETGLPRPLAPSGASALIEADEEPPLDTFSPVLGPGNGSPAF----ALRRGTA 1011

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
             H ++  L            +  + +I          P     +       I        
Sbjct: 1012 IHMLLQYLPDVPQADRETLAHDYLDRIAAD------WPETERQMAWQSVRTILDD--PTY 1063

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETA 929
              + +   +  V I   + +      ++G  DRI  +    V I DYKT   P K  +  
Sbjct: 1064 APVFAQGSRGEVAIMGTIELGGRDHAVSGQIDRI-SVGENRVLIVDYKTNRPPPKTIDAV 1122

Query: 930  QKLIDPQLSLEAAALK 945
                  QL+L    L 
Sbjct: 1123 PFAYRAQLALYRELLA 1138


>gi|320102498|ref|YP_004178089.1| hypothetical protein Isop_0951 [Isosphaera pallida ATCC 43644]
 gi|319749780|gb|ADV61540.1| hypothetical protein Isop_0951 [Isosphaera pallida ATCC 43644]
          Length = 1245

 Score =  145 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 123/1107 (11%), Positives = 288/1107 (26%), Gaps = 184/1107 (16%)

Query: 85   VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              + +     L            R+ + A L       LP     L   + L+L      
Sbjct: 111  ARDHWRNRFTLDRARGLVRPRPDRVWDFAELWEHIGQALPKPPGRLGEVAALALIDECLQ 170

Query: 145  AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                 + L      +  ++        L  +++ +W        + A +    R    + 
Sbjct: 171  TARQRQLL-----KLVPQDIDLRGYRRLLRDQFRLW---TLSERRSAPRSDQSRTTSSSP 222

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD- 263
            ++P+         +A  L +  +  +       +          + +HP    +    + 
Sbjct: 223  ATPLSEFDQTAEEDAFTLFQLYRRWLETNRFEDAAGWVVWASHGLEHHPQVVRLRLEPET 282

Query: 264  ------CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
                        I   +T    +           P+ +L++     +  ++ V+      
Sbjct: 283  VAVIDPPAHGPVIRRLLTFFRDHTRRLELVLPDDPEPTLSEPYRPWNALKQQVRAW---- 338

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ-KCFSDVALIEADNEREE---AIS 373
               +  + V S +  P   + +  T    ++    +      V ++ A +   +   A  
Sbjct: 339  --RFVENRVDSPADRPEGLAHLNATLFRLDEHHLPRHDQNQGVQILGAPSGEAQGLVAAR 396

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
             A+ L        +   L  +    +     +L   G+ +       LS       L  +
Sbjct: 397  EALRLHQQGIPWNQMLFLTRSWDEASDEWSRDLNACGVPLRSLRRKTLSEKPVIRSLLRI 456

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            +  +        +   ++  L                     L   + S+    L +  +
Sbjct: 457  IRLVAHDWPTGEVVACLRDRLIAPTETVFEPDERDTQAAFQELPSLRFSWLDRALAADAV 516

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLL-----------------------VDHILQC 530
             R         +    +R+++      +                           H    
Sbjct: 517  ARTRLPGGLEALRVGLTRMTQAATGEPLDASRAATASPPRNLDQNDRFGRVRKARHARIA 576

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG----KTLSS 586
            +  L              +            + + L +H    + W           L  
Sbjct: 577  LRVLNWLAARLAPLNAPRTRPAHLDALEEVAEALDLTQHTDHLHDWSRFRLALEEDELIV 636

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETV------KPKIEKSSTLFILGTLESRLLN 640
                     S    +  ++ +   ++                +      ++   ++R L 
Sbjct: 637  RIDAEARGQSPPSESWSDFANRAEQIARDVRFEPGSETGWDSDHPDQATLMTLGQARGLK 696

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ----------------- 683
               +++  L  G +P + A    L+         ++    I                   
Sbjct: 697  AKVVMMANLGRGAFPSHRAAEALLANPFGGSAAGESELDAIAIDNESSVTDWFPTQETDN 756

Query: 684  -------AAHDFEMANGTRHLIYTRSLRENNI-PTIASRWLQRLLVLGGTDFFDNLKKR- 734
                   AA    +   T HLI      + +  P  A+ +++ +      + F +   R 
Sbjct: 757  LAFAHEMAAFLRVVGTATHHLILIYPKADLSGHPLQAAAFVEEVCRRFEPNLFPDPISRL 816

Query: 735  --------------------GQCYLDWTRKLDYTTKQP---------------------- 752
                                G         L    + P                      
Sbjct: 817  DAVKEPNLCLTRSDRLVAAVGHALRGEVDDLRRLARDPGFLGALTGTSRALESNQARWHD 876

Query: 753  ------------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                           R         +   +S ++++  +  P+  +AR +L L  + +  
Sbjct: 877  HEFGPYDGMICSEPLRRWIAHTFAPEHWVFSPTQLESYLLCPFQFFARYVLGLITVENSD 936

Query: 801  K-DPDRTDRGTLFHNIITELIKKRINK---------NTPEINHLMKQIIDSHFEKENLP- 849
            + +PD T+ G   H ++  + K                  +   +++ +    EK + P 
Sbjct: 937  ELEPDYTESGRTIHAVLEHVHKIHPEPLQLATPTQSWKQALERELEREVRHRLEKHDPPI 996

Query: 850  ----PHIDIIWRHLF----HKISHSFLEHEEKIQSSIEKIFVNIPA-KMAIES------- 893
                  +  I+         +  +   ++  +    +    V     +  I+        
Sbjct: 997  HPVEAGLRRIYAERLVRQCRRYLNQLEDYLARAGRGVRFEKVEAKFGERNIDGTLINPLI 1056

Query: 894  -----IGIHLTGFADRID--LLKSG---FVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
                   + L G  DRID             + DYK+G  P  +  ++    QL L A A
Sbjct: 1057 LGKASERVVLQGTIDRIDVKREPDKPTLSFRVLDYKSGHVPSLKEVRERGAVQLPLYALA 1116

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
            ++          +V +  Y  +++           K      L +   + ++E V  L+ 
Sbjct: 1117 VERLGLLG-TPAEVEDFGYWDVRRDG-----WRAIKVSDWGALRDSLEQFVLEAVARLRQ 1170

Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLARV 1030
            GE P  S      +     EY +L R+
Sbjct: 1171 GEFPVASR---DPQCTAFCEYRNLCRI 1194


>gi|168217732|ref|ZP_02643357.1| ATP-dependent nuclease, subunit B [Clostridium perfringens NCTC 8239]
 gi|182380211|gb|EDT77690.1| ATP-dependent nuclease, subunit B [Clostridium perfringens NCTC 8239]
          Length = 1158

 Score =  145 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 125/907 (13%), Positives = 257/907 (28%), Gaps = 143/907 (15%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            + LK     +  RL E         Q+ L+  + +         I I   +   P    +
Sbjct: 156  EELKDVFNEFNSRLHE-GYVDE-EDQLLLLNEKLDGCSLYDGAEIWIDEFSSFTPNQLSV 213

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            +  +        +   +D                   S     + + +  L  L+    I
Sbjct: 214  IGKLLKRAKSVNITLSID-----------EVNLPKGESDLFVATKNTEKRLMNLIQEEGI 262

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                   L       +  +  ++           +                + + L  A+
Sbjct: 263  AFNGYINLNEDIPYRFKENKELAHIERQLYAYPFKQYRGKN----------NSLRLYRAN 312

Query: 366  NEREEAISIAIALRMSLDE---NKKKSALITADRN-LARRVKLELTRFGINIDISAGIPL 421
            N  +E   +A  +   + E     K  ++I  D +   + V      + I   I   I +
Sbjct: 313  NNYDEIEFVAKDILRLVREKQYRFKDISVICRDVDNYEKVVSAIFAEYEIPYYIDKKIDI 372

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            ++      + S ++ I K   + ++   +K  L K        +   + LE   L     
Sbjct: 373  ASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRG-IEGAELIDELENYVLAYGIK 431

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                M+             N +     +  + EE+K+    L D     +TPL       
Sbjct: 432  GKKWME----------EWINYSSSILKEEEILEENKQRLERLNDIRETIVTPLDELNKQC 481

Query: 542  NSTCGNLSISDWT-KLTVTCLQNVCLDE---------HRKLPNLWFEEEGKTLSSLFSKI 591
                     +    +   + L  +   +            +    + E       +  + 
Sbjct: 482  KGKKTLKEFATILYEFLDSKLDVMDTIDKYVDYFKENDMAIEAKEYSEVRDIFIDVLEQA 541

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            ++       +  E++ ++   +    +         + I      +      L + G+N+
Sbjct: 542  VDVLGNEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVND 601

Query: 652  GVWPKNTAKNPFLS---RVMQSDLNLKTA---------EKYIGQAAH------------- 686
            GV P  + +   LS   R +  +  +  A         E+++   A              
Sbjct: 602  GVLPSASKEEGILSDNDREILLEKGISLASDTRTKIFEEQFLVYTAFTIAEEYLVVTYPL 661

Query: 687  -DFEMANGTRHLIYTRSLRENNIPTIAS-----------------RWLQRLL-----VLG 723
             DFE  +    +I  R  +        S                   L  L+        
Sbjct: 662  ADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVDDKYEKISAKLPTLNELMIAIRKNYD 721

Query: 724  GTDFFDNLKKRGQCYLD---WTRKLDYTTKQPHY---------KRPKPFPPLEAQPRTYS 771
            G +  D  K     YL    W  +++Y  K   Y         ++ K          + S
Sbjct: 722  GAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYEDNKNKISLS 781

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT--- 828
             S +++    P+A Y +  LK         +    D G+  H I+ E   +   K+    
Sbjct: 782  VSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDLKWS 839

Query: 829  ----PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSI 878
                    +++  ++D+  +      L       +    F +I      +  E+  +S  
Sbjct: 840  DLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKRSDF 899

Query: 879  EKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGDNP- 924
            E     +           K+ +      +L G  DR+D L   G   + I DYKTG    
Sbjct: 900  EIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGSKKF 959

Query: 925  KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
                    +  QL +   A +        +      + Y R+      D I   K   + 
Sbjct: 960  DLNKFYNGLQMQLLVYLDAIINNSENIIENQAMPGAILYFRID-----DPILKSKGDLTE 1014

Query: 984  DELSEKS 990
            +E+  + 
Sbjct: 1015 EEIKSEV 1021


>gi|322387879|ref|ZP_08061486.1| exonuclease RexB [Streptococcus infantis ATCC 700779]
 gi|321141152|gb|EFX36650.1| exonuclease RexB [Streptococcus infantis ATCC 700779]
          Length = 1083

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 120/930 (12%), Positives = 252/930 (27%), Gaps = 143/930 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                 + L +I   + T +  + DL +L +             L +  +  T  L    
Sbjct: 110 QDPQFIQQLIEIYHEMTTAKMSFLDLESLTDADKRSD-------LILIFEKITAYLN-QG 161

Query: 204 ASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             S       L+ A  E+      ++  ++I G T        L+  +     G  ++ G
Sbjct: 162 QVSQGSPLSYLIDAIEENKVSSDFSEIALVIDGFTRFSAEEEHLVDLLHR--KGVEIIIG 219

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
           +               S    +S+ +     Q S+  L          +        E  
Sbjct: 220 V-------------YASKRAYNSSFSEGNLYQASVEFL--------RHLAFKYQTKAEDA 258

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            +      +F           D  E  +    K   ++ +     ++EE   +A ++R  
Sbjct: 259 CQEHKNLDAFAKASKLLESAYDYSEISLEVDAKDREELQIWSCLTQKEELELVARSIRQK 318

Query: 382 LDENKKKS-----ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L +  K S      L+    +    ++    ++ I   +     ++    +  + S+   
Sbjct: 319 LHQEPKLSYKNFHILLGDVESYKLSLQTIFNQYQIPFYLGRSESMAHHPLTQFVESVGRL 378

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +  L++  L                        + +  +I   +  +    
Sbjct: 379 KRYYFRQEDLINLLRTGL----------------------YTDISQEEIDSFEQYIRYLG 416

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
               +N      ++   + D E    L   +L  +  L++ +  K         +     
Sbjct: 417 IDGLSNFKQEFTKNHHGKFDLEKLNELRVRVLNPLETLLSSRKQKTENILTKWNNFLKDA 476

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
           +VT       +          EE  K    +  +        +    +++ ++   +   
Sbjct: 477 SVTKQLQSLSETMDATEQERQEEVWKAFCHVMEQFATVFEGSQVTLDDFLALLHSGMSLS 536

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
             +        + +        L  D +   GL +   PK T     LS   +  LN +T
Sbjct: 537 NYRTIPATVDKVLVQSYDLIAPLTSDYIYALGLTQDHLPKITQNMSLLSDEEREVLNQRT 596

Query: 677 AEKYIGQAAHD-------FEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLG-- 723
            E      A         + M +      + L+ +     N   +  S +L+ L   G  
Sbjct: 597 QEGSQLLIASHENLKKNRYTMLSLVNSAKKQLVLSTPSLLNENESKESFYLKELQDFGFS 656

Query: 724 --------------------------------GTDFFDNLKKRGQCYLDWT--RKLDYTT 749
                                           G              L     RKL+   
Sbjct: 657 KIEKRIDRRNLSKDDIGSYHSLLSSLVAYHQQGESETSEQDLTFIKVLARVMGRKLEDQG 716

Query: 750 KQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
            +       P               + Q    S S + +   + Y+ Y R +L L     
Sbjct: 717 LENPVLPTSPKSKTLATETLEALYPQDQDFYLSTSGLTEFYRNEYSYYLRYVLGLQ--EE 774

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIW 856
            +  PD    G   H I    +K  ++                +  F+          + 
Sbjct: 775 LRLRPDARSHGNFLHRIFERAMKLPVDTPFDRRLEQAISETSQEREFQAIYQESLEAQLT 834

Query: 857 RHLFHKISHS---FLEHEEKIQSSIEKIFV---NIPAKMAIESIGIHLTGFADRIDLLKS 910
           + +   ++ +    L H  +I++  E+                  +++ G  DRID LK+
Sbjct: 835 KEVLLDVARATGHILRHNSEIETIQEEAVFGGKEQAFVQLDNGRNVYVRGKVDRIDRLKT 894

Query: 911 GFVD-ITDYKTGDNPKKET-----AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
                + DYK+                 ++ QL    AALK    +           Y+ 
Sbjct: 895 SDAIGVVDYKS----SLTQFNFPLFYNGLNSQLPTYLAALKKEGNTDF-----FGAMYLE 945

Query: 965 LKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           + +  +         K  A+       + L
Sbjct: 946 MTEPVQSLQTVKTLSKALAETTKTMKYQGL 975


>gi|120611308|ref|YP_970986.1| hypothetical protein Aave_2640 [Acidovorax citrulli AAC00-1]
 gi|120589772|gb|ABM33212.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1]
          Length = 883

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 120/854 (14%), Positives = 233/854 (27%), Gaps = 67/854 (7%)

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            + L    A   +  +  L RA          GP++ A    +    A   +         
Sbjct: 82   DDLARDTARDTLTARSLLDRAGLGGQRDVLAGPLLDAACQLAPAVAAVPPAGREAWAGRV 141

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
              L           +     +     +  T ++T   +        +      +  L   
Sbjct: 142  RPLLPPAADGAALRYEAAVARIALEWALATRHATDVLFE-----PRVRASAPVLVVLDGF 196

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENK-IPNIQKCFSDVALIEADNEREEAISIA 375
              +    ++             +          +P+ +    DVAL  A +  +EA   A
Sbjct: 197  QPDPLAHALCALWGPDRACVLPLCPASGSGGTGVPHAEAAAGDVALHAAADAEDEAQRAA 256

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              +   + E +   AL   DR L RR+   L   G+ +    G  LSTT   + + + L 
Sbjct: 257  ACVLRYVAEGRTPVALAAIDRALTRRISALLAGRGVGVHDENGWTLSTTRAGAQVMAALR 316

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            A        A+   +KH         +   R      +        S             
Sbjct: 317  ACMAHASGDAVLDWLKHVPIADAGALRQAERWLRRTGMGDWPAAVRSAG----------L 366

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
             A    +T              E    LV         +   +          ++   T 
Sbjct: 367  AAGPVQDTAGAEGLEFPDPAAPEGWRTLVRRTEAWRAAMQAPRDLPGWLAALRALLQATG 426

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                  ++           L   +EG+             S       E++     +++ 
Sbjct: 427  QWERLQEDAAGLRVLAELRLDLAQEGEW-------RGLDASGRPMALAEFVHWADEVLEA 479

Query: 616  ETVKPK--IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               +P+   +      ++   +     F  L+  G +E             +R  +  L 
Sbjct: 480  GRFRPEFGGDGVPDAVVVPLPQMLARPFAALVAAGCDEKRLQAAPEPPGAWTREQRETLG 539

Query: 674  LKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
            L             +  A    H+ +  R   E   P +AS  +  L   GG     + +
Sbjct: 540  LPMRNDLEAAQRAAWAHALSVGHVDVLWRIGDEGGEPLLASPLVLALQAEGGRRAGIDPR 599

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
            +              +       RP P           S S    L + PY  +A R+L 
Sbjct: 600  E------------LRSVAPSPVPRPLPRGD-ALPLVRVSSSAYSDLRHCPYRFFALRLLG 646

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDSHFEKENLP 849
            L        + D+ D G   H ++    +   +   ++T     L+    ++    + L 
Sbjct: 647  LQESDELGAEVDKRDFGNWLHAVLQRFHEGLRDAPVEDTATRRQLLDAAAEATTRAQRLS 706

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909
                + +   +  +   +L      ++   + F     +       + L G  DR+D ++
Sbjct: 707  AGEFLPFSAGWPALREGYLRWLSGHEAGGAR-FREAERRCVQPLGSLELIGTLDRVDAVR 765

Query: 910  SG------FVDITDYKT-GDNPKKETAQKL-IDPQLSLEAAALKAGSFSQIDCRKVANLF 961
                     V + DYKT G++  +        D QL+  AA L                 
Sbjct: 766  GQAPGEPPTVMVIDYKTEGESATRRRIAAGTEDTQLAFYAALL---------GDDTLRAL 816

Query: 962  YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
            Y+ + ++ +      +      D+L E  L +   I            +           
Sbjct: 817  YVNVGERGETRSFEQEDVVALRDQLVEGLLHDFARIAEGAPLPALGEGA-------VCDY 869

Query: 1022 SEYDHLARVAEWRE 1035
                 L R   W +
Sbjct: 870  CAARGLCRKDFWSD 883


>gi|18309002|ref|NP_560936.1| ATP-dependent deoxyribonuclease chain B [Clostridium perfringens str.
            13]
 gi|81768349|sp|Q8XPE3|ADDB_CLOPE RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|18143677|dbj|BAB79726.1| ATP-dependent deoxyribonuclease chain B [Clostridium perfringens str.
            13]
          Length = 1158

 Score =  144 bits (363), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 129/907 (14%), Positives = 263/907 (28%), Gaps = 143/907 (15%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            + LK     +  RL E         Q+ L+  + +         I I   +   P    +
Sbjct: 156  EELKDVFNEFNSRLHE-GYVDE-EDQLLLLNEKLDGCSLYDGAEIWIDEFSSFTPNQLSV 213

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            +  +        +   +D              S    S     + + +  L  L+    I
Sbjct: 214  IGKLLKRAKSVNITLSID-----------EVNSLKGESDLFVATKNTEKRLMNLIQEEGI 262

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                   L       +  +  ++           +                + + L  A+
Sbjct: 263  AFSGYINLNEDIPYRFKENKELAHIERQLYAYPFKQYRGKN----------NSLRLYRAN 312

Query: 366  NEREEAISIAIALRMSLDE---NKKKSALITADRN-LARRVKLELTRFGINIDISAGIPL 421
            N  +E   +A  +   + E     K  ++I  D +   + V    + + I   I   I +
Sbjct: 313  NNYDEIEFVAKDILRLVREKQYRFKDISVICRDVDNYEKVVSAIFSEYEIPYYIDKKIDI 372

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            ++      + S ++ I K   + ++   +K  L K        +   + LE   L     
Sbjct: 373  ASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRG-IEGAELIDELENYVLAYGIK 431

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                M+    V    +  K           +SEE+K+    L D     +TPL  +    
Sbjct: 432  GKKWME--EWVNYSSSILKEEE--------ISEENKQRLERLNDIRETIVTPLDEFNKQC 481

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRK----------LPNLWFEEEGKTLSSLFSKI 591
                     +      +    ++     +           +    + E       +  + 
Sbjct: 482  KGKKTLKEFATILYEFLDSKLDIMDTLDKYVDYFKENDMAIEAKEYSEVRDIFIDVLEQA 541

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            ++       +  E++ ++   +    +         + I      +      L + G+N+
Sbjct: 542  VDVLGNEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVND 601

Query: 652  GVWPKNTAKNPFLS---RVMQSDLNLKTA---------EKYIGQAAH------------- 686
            GV P  + +   LS   R +  +  +  A         E+++   A              
Sbjct: 602  GVLPSASKEEGILSDNDREILLEKGISLASDTRTKIFEEQFLVYTAFTIAEEYLVVTYPL 661

Query: 687  -DFEMANGTRHLIYTRSLRENNIPTIAS-----------------RWLQRLL-----VLG 723
             DFE  +    +I  R  +        S                   L  L+        
Sbjct: 662  ADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVDDKYEKISAKIPTLNELMIAIRKNYD 721

Query: 724  GTDFFDNLKKRGQCYLD---WTRKLDYTTKQPHY---------KRPKPFPPLEAQPRTYS 771
            G +  D  K     YL    W  +++Y  K   Y         ++ K          + S
Sbjct: 722  GAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYEDNKNKISLS 781

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT--- 828
             S +++    P+A Y +  LK         +    D G+  H I+ E   +   K+    
Sbjct: 782  VSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDLKWS 839

Query: 829  ----PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSI 878
                    +++  ++D+  +      L       +    F +I      +  E+  +S  
Sbjct: 840  DLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKRSDF 899

Query: 879  EKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGDNP- 924
            E     +           K+ +      +L G  DR+D L   G   + I DYKTG    
Sbjct: 900  EIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGSKKF 959

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
                    +  QL +   AL   S + + +      + Y R+      D I   K   + 
Sbjct: 960  DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGDLTE 1014

Query: 984  DELSEKS 990
            +E+  + 
Sbjct: 1015 EEIKSEV 1021


>gi|227507849|ref|ZP_03937898.1| ATP-dependent deoxyribonuclease subunit B [Lactobacillus brevis
            subsp. gravesensis ATCC 27305]
 gi|227192687|gb|EEI72754.1| ATP-dependent deoxyribonuclease subunit B [Lactobacillus brevis
            subsp. gravesensis ATCC 27305]
          Length = 1181

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 104/983 (10%), Positives = 251/983 (25%), Gaps = 161/983 (16%)

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +S     + L +++   ++ L    ++             A        +A  I +++  
Sbjct: 91   ISPAGINMLLYQIMTEHQDDLILFSQE-------------AGLPGFIDQIAHQISVMQAG 137

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
                EDL  +   +  +             I    + +R+ +    +   + +  + ++ 
Sbjct: 138  NILPEDLMKMNENQESRLSNDLRDKLHDFSIIYAEYEKRIDDQYFDN---HNVLNLLSDY 194

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                  +     I+  +       RL+ T+        +   LD              + 
Sbjct: 195  LQRQDLSHYHFYISDFSKFTAQECRLVETLTQGGASMTMSLILDKPY---------RTAL 245

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +    S        K           +  L  ++ +          + L       
Sbjct: 246  PDQPNLFYQSAKLFLRFYKF-----AADNQIPYLPIITADQPR-----ISADLLKLEKFW 295

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADR 396
              +  L     N       + + +ADN+  E   +A  +R  +           ++T   
Sbjct: 296  IQSSGLGAIDDNPITVSKSIQVYQADNQYSELDQMATRIRQMVSTGKYRYSDFLILTRHL 355

Query: 397  NLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF----KLNDFMAIATLVK 451
            +    +     T   I         +       +L +L +       +   +  +   +K
Sbjct: 356  DSYETILDSIFTMQQIPYFRDIQKSMVDHPLVELLGALFDMYDPDRPRNYRYDDVMRFLK 415

Query: 452  HPLAKFGFPEK------YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              L      +          +A +  E + L+        +         +A   + T +
Sbjct: 416  SELVLPQATDGTAMKIDDYRQAVSLTENLVLKNGFEGKKWIQDDDWQYVWVADDDDGTVL 475

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLTVTCLQ 562
                 R++++   +  L+ + +          KTN ++                      
Sbjct: 476  TDKDKRITQQINVIRHLVKNALPNFYNRFYKAKTNADAAGILYRFLVENGVVNRLQDWRN 535

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
               +D      +   E+  +T  SL  + +         A ++  +I    +G T     
Sbjct: 536  A-AVDRQDINRSDEIEQVWRTFCSLLDENVRILGDKPFVAQDFWALIYAGFEGATYSQIP 594

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD----------L 672
                 + I  +   ++ N    ++ G N+   P+             S           L
Sbjct: 595  STLDQVQISESGMVQMNNRKVTMMIGSNDETMPERIVNESLFGDDDVSQIQDNLSDSQYL 654

Query: 673  NLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTI-ASRWLQRLL---------- 720
            N    E+   +   ++      +  LI++ +   N+   I  S ++ R+           
Sbjct: 655  NDPADEQMAAEPYLNYLAFTSPSSRLIFSYTNHVNDESGINLSPYVSRIAAHFNLKVVNY 714

Query: 721  -----------------------------------------VLGGTDFFDNLKKRGQCYL 739
                                                          +             
Sbjct: 715  AAVPDNQRAVNVYIGSKRATLHHLIQVIQDTYKNKGQLNDTWAFIFNQLKQDPDAAPLTN 774

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                 +DY        R        +     S S+++    +PY  + +  L+L     F
Sbjct: 775  RLLGSIDYKNVPVPLSREIAEKLYGSALN-ISISQLESFYENPYEYFLKYGLRLQEREQF 833

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKENLPPH----- 851
            +        G  FH  +  +I     +        +  +  ++  + E     P      
Sbjct: 834  E--LSPASTGQFFHEALDRIISMVHEQKIDLAGLSDRDVDDLVAENVEAMVNDPDNFQYI 891

Query: 852  ----------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA----IESIGIH 897
                      I +  +    ++  +    +++  + +      +         ++ +   
Sbjct: 892  ILNSSNRMHYITLQLQATIQQMIRTM--RDQQRITPMRPQNTELIFGQPSSKGLKGLSFE 949

Query: 898  L--------TGFADRIDLLK--SGFVD-ITDYKT-GDNPKKETAQKLIDPQLSLEAAALK 945
            L         G  DRID +K        I DYK+         A      QL      L+
Sbjct: 950  LPNQKKVNVRGRIDRIDSMKVNDKRYFGIVDYKSADKKFDFNQAYIGTSMQLLTYLDVLR 1009

Query: 946  AG---SFSQIDCRKVANLFYIRL 965
                          +A   Y+ +
Sbjct: 1010 YNLSTLNPDSSDALLAGALYMHI 1032


>gi|227510907|ref|ZP_03940956.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus buchneri
            ATCC 11577]
 gi|227085859|gb|EEI21171.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus buchneri
            ATCC 11577]
          Length = 1181

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 103/983 (10%), Positives = 249/983 (25%), Gaps = 161/983 (16%)

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +S     + L +++   ++ L    ++             A        +A  I +++  
Sbjct: 91   ISPAGINMLLYQIMTEHQDDLILFSQE-------------AGLPGFIDQIAHQISVMQAG 137

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
                EDL  +   +  +             I    + +R+ +    +   + +  + ++ 
Sbjct: 138  NVLPEDLMKMNENQESRLSNDLRDKLHDFSIIYAEYEKRIDDQYFDN---HNVLNLLSDY 194

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                  +     I+  +       RL+ T+        +   LD              + 
Sbjct: 195  LQRQDLSHYHFYISDFSKFTAQECRLVETLTQGGASMTMSLILDKPY---------RTAL 245

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +    S        K           +  L  ++ +          + L       
Sbjct: 246  PDQPNLFYQSAKLFLRFYKF-----AADNQIPYLPIITADQPR-----ISADLLKLEKFW 295

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADR 396
              +  L     N       + + +ADN+  E   +A  +R  +           ++T   
Sbjct: 296  IQSSGLGAIDDNPITVSKSIQVYQADNQYSELDQMATRIRQMVSTGKYRYSDFLILTRHL 355

Query: 397  NLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF----KLNDFMAIATLVK 451
            +    +     T   I         +       +L +L +       +   +  +   +K
Sbjct: 356  DSYETILDPIFTMQQIPYFRDIQKSMVDHPLVELLEALFDMYDPDRPRNYRYDDVMRFLK 415

Query: 452  HPLAKFGFPEK------YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              L      +          +A +  E + L+                  +A   + T +
Sbjct: 416  SELVLPQATDGTAMKIDDYRQAVSLTENLVLKNGFEGKKWTQDDDWQYVWVADDDDGTVL 475

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLTVTCLQ 562
                 R++++   +  L+ + +          KTN ++                      
Sbjct: 476  TEKDKRITQQINVIRHLIKNALPNFYNRFYKAKTNADAAGILYRFLVENGVVNRLQDWRN 535

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
               +D      +   E+  +T  SL  + +         A ++  +I    +G T     
Sbjct: 536  A-AVDRQDINRSDEIEQVWRTFCSLLDENVRILGDKPFVAQDFWALIYAGFEGATYSQIP 594

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM----------QSDL 672
                 + I  +   ++ N    ++ G N+   P+                         L
Sbjct: 595  STLDQVQISESGMVQMNNRKVTMMIGSNDETMPERIVNKSLFGDDDVLQIQDNLSDSQYL 654

Query: 673  NLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTI-ASRWLQRLL---------- 720
            N    E+   +   ++      +  LI++ +   N+   I  S ++ R+           
Sbjct: 655  NDPADEQMAAEPYLNYLAFTSPSSRLIFSYTNHVNDESGINLSPYVSRIAAHFNLKVVNY 714

Query: 721  -----------------------------------------VLGGTDFFDNLKKRGQCYL 739
                                                          +             
Sbjct: 715  AAVPDNQRAVNVYIGSKRATLHHLIQVIQDTYKNKGQLNDTWAFIFNQLKQDPDAAPLTN 774

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                 +DY        R        +     S S+++    +PY  + +  L+L     F
Sbjct: 775  QLLGSIDYKNVPVPLSREIAEKLYGSALN-ISISQLESFYENPYEYFLKYGLRLQEREQF 833

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKENLPPH----- 851
            +        G  FH  +  +I     +        +  +  ++  + E     P      
Sbjct: 834  E--LSPASTGQFFHEALDRIISMVHEQKIDLAGLSDRDVDDLVAENVEAMVNDPDNFQYI 891

Query: 852  ----------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA----IESIGIH 897
                      I +  +    ++  +    +++  + +      +         ++ +   
Sbjct: 892  ILNSSNRMHYITLQLQATIQQMIRTM--RDQQRITPMRPQNTELIFGQPSSKGLKGLSFE 949

Query: 898  L--------TGFADRIDLLK--SGFVD-ITDYKT-GDNPKKETAQKLIDPQLSLEAAALK 945
            L         G  DRID +K        I DYK+         A      QL      L+
Sbjct: 950  LPNQKKVNVRGRIDRIDSMKVNDKRYFGIVDYKSADKKFDFNQAYIGTSMQLLTYLDVLR 1009

Query: 946  AG---SFSQIDCRKVANLFYIRL 965
                          +A   Y+ +
Sbjct: 1010 YNLSTLNPDSSDALLAGALYMHI 1032


>gi|304314662|ref|YP_003849809.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str.
            Marburg]
 gi|302588121|gb|ADL58496.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str.
            Marburg]
          Length = 918

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 96/1001 (9%), Positives = 256/1001 (25%), Gaps = 161/1001 (16%)

Query: 25   LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
            ++   + +      ++P  L    +   TK+A  EL+   +   G ++  +  I ++   
Sbjct: 35   IIVERVAQLIEERGVDPGSL---VVITFTKKAADELKERILGRVGSRAEEM-QISTIHSF 90

Query: 85   VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                         + +P  S                ++   ++        L L  +P  
Sbjct: 91   CNRILRTYP----DHHPLGS-----------HFHVLDEEKQLMFIYDHREELGLAHTPRE 135

Query: 145  AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                   L       +    + E L                     A   + + + E   
Sbjct: 136  RF---VKLQAFFSECQENMIEPEALLEYHRSHGS---KRIEIVAAKAYGKYLKLMEEKRV 189

Query: 205  SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                G Q  +++            +     +++     + P   R +  +A       + 
Sbjct: 190  LDFSGMQWQVVKLLESDERVLEDLRARYRFLMVDEYQDTNPIQERFLELLAGDEKN--IF 247

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD--IKREDVKRLGNVS 317
               D       +   T ++                   + +  +    +R          
Sbjct: 248  AVGDEDQSIYGFRGSTPENFLGFEDKYGAEVVMLERNFRSVPSIVDITQRFMEGYRDYPK 307

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
                 R+                                  V +++    ++E  +I   
Sbjct: 308  TIRPVRNSKNR------------------------------VFILDNPTHQDEPRNIVSI 337

Query: 378  LRMSLDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
            +R  +D          + L  + ++ A  +  EL R  I  ++                 
Sbjct: 338  IRALVDHDVIPHQGYVTLLFRSVKHDAVEIMNELRREDIPFNVYGEGG------------ 385

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA-LELVALRGNKNSYDIMDLKSL 491
                 F   + + I  L+ H             R      E      ++      +   +
Sbjct: 386  ----FFDREEILYIIQLLHH-------TRSIRRRIVRLSNENTEHFESEFMDLTGESIEI 434

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            + +       +             D +    LV       + L   +        +    
Sbjct: 435  IKNMGDEDFRSLRTHEEFREAGFTDHDDIEKLVALNRLIDSELGVLERYYEILEISRYPH 494

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
               +            +      L+      ++   + ++    +       E++ +   
Sbjct: 495  RLLER----------GDDESREKLYNLARFSSIIKDYERVSSEPTVEGLM--EFVRMAMN 542

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE---GVWPKNTAKNPFLSRVM 668
                +  +  ++   ++ ++    ++ L F  +I+  +         ++  ++  +   +
Sbjct: 543  GSVKKYDQILLDNPYSVNVMTMHRAKGLEFPVVIICSVFNGKLPRKNRDEQEDLSIPDEL 602

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
            +           + +    +      + ++   +   +      S +++ L  L  +   
Sbjct: 603  RKSTG---RGDVLEERRLFYVGMTRAQDMLIISATENHRGRLGYSPFIEDL--LSASRIT 657

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
             +   R          +  T +    +          +    SF+E+   +  P+     
Sbjct: 658  SDKLGRIDPEYARIEVIKNTCEVGDIE--------SMETFRMSFTELNTYLTCPFRYMML 709

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
                 D      +       G   H  +  + ++ + +     +  + ++        NL
Sbjct: 710  YEYGFDVPSTMNQ-----IYGMAVHECLRRINRRLM-RGEVITDGYIHELASETLRDLNL 763

Query: 849  PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908
                   ++    +              +   I    P  +  +  G  LTG  D I   
Sbjct: 764  SREAFDAFKSKLKRYIEDI------RSRAARIISAEKPFSIMRD--GFMLTGQTDLIIEN 815

Query: 909  KSGFVDITDYK--TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
             +G +++ D+K  TG+  +          QL L   AL+   F          L Y    
Sbjct: 816  PNGGLELVDFKAMTGEGIEATDI----SLQLGLYRHALEED-FDGF-------LAY---- 859

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
                    T +  ++   E  +     LIE+   ++  E P
Sbjct: 860  --------TFEDSEWHEIEPLDDVEAVLIEVAGRVRREEFP 892


>gi|227523106|ref|ZP_03953155.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus hilgardii
            ATCC 8290]
 gi|227089710|gb|EEI25022.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus hilgardii
            ATCC 8290]
          Length = 1181

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 103/983 (10%), Positives = 249/983 (25%), Gaps = 161/983 (16%)

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +S     + L +++   ++ L    ++             A        +A  I +++  
Sbjct: 91   ISPAGINMLLYQIMTEHQDDLILFSQE-------------AGLPGFIDQIAHQISVMQAG 137

Query: 163  EKKWEDLHAL---KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
                EDL  +   +  +             I    + +R+ +    +   + +  + ++ 
Sbjct: 138  NVLPEDLMKMNENQESRLSNDLRDKLHDFSIIYAEYEKRIDDQYFDN---HNVLNLLSDY 194

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                  +     I+  +       RL+ T+        +   LD              + 
Sbjct: 195  LQRQDLSHYHFYISDFSKFTAQECRLVETLTQGGASMTMSLILDKPY---------RTAL 245

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +    S        K           +  L  ++ +          + L       
Sbjct: 246  PDQPNLFYQSAKLFLRFYKF-----AADNQIPYLPIITADQPR-----ISADLLKLEKFW 295

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADR 396
              +  L     N       + + +ADN+  E   +A  +R  +           ++T   
Sbjct: 296  IQSSGLGAIDDNPITVSKSIQVYQADNQYSELDQMATRIRQMVSTGKYRYSDFLILTRHL 355

Query: 397  NLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF----KLNDFMAIATLVK 451
            +    +     T   I         +       +L +L +       +   +  +   +K
Sbjct: 356  DSYETILGPIFTMQQIPYFRDIQKSMVDHPLVELLGALFDMYDPDRPRNYRYDDVMRFLK 415

Query: 452  HPLAKFGFPEK------YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              L      +          +A +  E + L+                  +A   + T +
Sbjct: 416  SELVLPQATDGTAMKIDDYRQAVSLTENLVLKNGFEGKKWTQDDDWQYVWVADDDDGTVL 475

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLTVTCLQ 562
                 R++++   +  L+ + +          KTN ++                      
Sbjct: 476  TEKDKRITQQINVIRHLIKNALPNFYNRFYKAKTNADAAGILYRFLVENGVVNRLQDWRN 535

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
               +D      +   E+  +T  SL  + +         A ++  +I    +G T     
Sbjct: 536  A-AVDRQDINRSDEIEQVWRTFCSLLDENVRILGDKPFVAQDFWALIYAGFEGATYSQIP 594

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM----------QSDL 672
                 + I  +   ++ N    ++ G N+   P+                         L
Sbjct: 595  STLDQVQISESGMVQMNNRKVTMMIGSNDETMPERIVNESLFGDDDVLQIQDNLSDSQYL 654

Query: 673  NLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTI-ASRWLQRLL---------- 720
            N    E+   +   ++      +  LI++ +   N+   I  S ++ R+           
Sbjct: 655  NDPADEQMAAEPYLNYLAFTSPSSRLIFSYTNHVNDESGINLSPYVSRIAAHFNLKVVNY 714

Query: 721  -----------------------------------------VLGGTDFFDNLKKRGQCYL 739
                                                          +             
Sbjct: 715  AAVPDNQRAVNVYIGSKRATLHHLIQVIQDTYKNKGQLNDTWAFIFNQLKQDPDAAPLTN 774

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                 +DY        R        +     S S+++    +PY  + +  L+L     F
Sbjct: 775  QLLGSIDYKNVPVPLSREIAEKLYGSALN-ISISQLESFYENPYEYFLKYGLRLQEREQF 833

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKENLPPH----- 851
            +        G  FH  +  +I     +        +  +  ++  + E     P      
Sbjct: 834  E--LSPASTGQFFHEALDRIISMVHEQKIDLAGLSDRDVDDLVAENVEAMVNDPDNFQYI 891

Query: 852  ----------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA----IESIGIH 897
                      I +  +    ++  +    +++  + +      +         ++ +   
Sbjct: 892  ILNSSNRMHYITLQLQATIQQMIRTM--RDQQRITPMRPQNTELIFGQPSSKGLKGLSFE 949

Query: 898  L--------TGFADRIDLLK--SGFVD-ITDYKT-GDNPKKETAQKLIDPQLSLEAAALK 945
            L         G  DRID +K        I DYK+         A      QL      L+
Sbjct: 950  LPNQKKVNVRGRIDRIDSMKVNDKRYFGIVDYKSADKKFDFNQAYIGTSMQLLTYLDVLR 1009

Query: 946  AG---SFSQIDCRKVANLFYIRL 965
                          +A   Y+ +
Sbjct: 1010 YNLSTLNPDSSDALLAGALYMHI 1032


>gi|304314626|ref|YP_003849773.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588085|gb|ADL58460.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 916

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 99/957 (10%), Positives = 261/957 (27%), Gaps = 139/957 (14%)

Query: 3   NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
              P V    P +   R ++            +   ++P    ++ +   T++A  EL+S
Sbjct: 23  TDGPLVIVAGPGAGKTRVLVE-----RTAYLVKRKGVSPE---NILVITFTEKAADELKS 74

Query: 63  EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
             I   G  + ++  I ++                                   L    +
Sbjct: 75  RLINCVGLDAELM-QISTIHSFCSTILREHPE-------------------EHDLGAGFE 114

Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAK--NLADIIDIIETEEKKWEDLHALKNEKYGMW 180
           + D    L     +   I   + + + +     +  +         ++L     ++Y   
Sbjct: 115 ILDEESQLMFLRSVFYRIGLNSFMKMGEVHEAIEFFNRCTENCVDPDELMEALKKRYPD- 173

Query: 181 WLLAADFLKIASKYWTERLVELNASSP---VGYQIALMRAEAEHLM--KGTKGPIIIAGS 235
                  +      + + L E               L+++  + L   +     I+I   
Sbjct: 174 -KKRYHGMAACYSQYLKALREEKKIDFPGLEKEVCLLLKSNEDVLESVRNKYRYIMIDEY 232

Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
             + P   R+   +A   +   V+   D       +   T ++                 
Sbjct: 233 QDTSPIQERIFRRIAEPKSSICVV--GDEDQSIYGFRGATPENFIRFRDKYDAEVVFLED 290

Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
             +    + +  +   R                                 +  I  ++  
Sbjct: 291 NFRSRAGIVLTADRFMR----------------------------GERHYQKTIKPVRGG 322

Query: 356 FSDVALIEADNEREEAISIAIALRMS-----LDENKKKSALITADRNLARRVKLELTRFG 410
            +DV ++ + +   EA +I   ++       + +    + L  + R  A ++  EL R G
Sbjct: 323 GTDVVILRSRDVNSEARNIVSLIKKLKSTGKIPDYGYVALLFRSVRYHADKILRELRREG 382

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
           I   +              +                                      + 
Sbjct: 383 IPYIVRGDGSFLKRYEVRRML----------------------YFLAYVDPPDYDDKFSG 420

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                   +    D +DL    L+ + + + +  +  + S    E   +     + IL  
Sbjct: 421 RWGGWWNISMFRGDFLDLGEETLEALESLERDVKLSDFTSIQELEAAGIRGEDAEKILGL 480

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                  +          +     ++T    + +     +    ++   +  +L   +  
Sbjct: 481 NRIRDELEQGS--LSVLQTFYRILEVTGYLRRLLLDGSDKSRARIFNLAKLSSLIDKYET 538

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
           I         + + ++ ++ + +  +    +    +++ ++   +++ L F  + +  + 
Sbjct: 539 IKPGARIQ--DILWYLYLLPQHLHHDEAVLEDP--ASVKVMTVHQAKGLEFPVVFICSVI 594

Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIP 709
           +G +P    +   L   +  +L L + E         +      +  LI + + R N   
Sbjct: 595 KGRFPGIKRRRKEL-VPIPQELLLSSGEPEDEDRRLFYVAMTRAQDALIISTAPRINTRK 653

Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
              S ++  L    G    +     G    +W  +                      P  
Sbjct: 654 VGISPYITELREKCGIYECECTSIEGCLEREWAEE----------------------PLR 691

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
            +FS +      P+           +   F +       G + H  + EL     N +  
Sbjct: 692 INFSALFTYEECPFRYMMIYHYGFVYPETFMQR-----YGIILHRCLEELHLAMKN-SED 745

Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
                ++++++  +        +    +    +   ++  + +      E + V  P   
Sbjct: 746 INGAFIRELVERCWIPMGRDDEVK---KRRLERELLNY--YHDSRDHIEEVVSVEEPFS- 799

Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            I    I + G  D I     G +++ D+K          +  ++ QL     AL+ 
Sbjct: 800 -IPDDDIIIEGRTDLIIRNSGGELELVDFK--AREHGGIERMGLEYQLRTYEYALRD 853


>gi|242309696|ref|ZP_04808851.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523697|gb|EEQ63563.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 670

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 133/409 (32%), Gaps = 44/409 (10%)

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                + ++G LE+R + F  +I+   NE   PK   K+ FL+ +++  + L T +     
Sbjct: 299  GGGRISVIGILETRGIEFSYIIVPEFNENNVPKVNQKDIFLNSLIREKVGLPTKKDRENL 358

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
              + +       H +    +  NN     SR+L    +     F+   KK G  +L    
Sbjct: 359  QKYYYSRLF--EHSLEVGVMFLNNDEDKPSRFLLDDKIFSEARFYKASKKYGDYFLS--- 413

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                  K   YK  +   PLE      S S+++ L+      Y R +L        +   
Sbjct: 414  -----GKALQYKEREIVAPLELGIM--SASKLECLLTCARKYYYRYVLGYKE----ENSN 462

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
               + G   H ++ E        +       +++ +    +          +      + 
Sbjct: 463  MGANVGMKLHKVLQEAYSSYQTHHNF---AQLQEEVYRGLQDYETKREFFELELA--KRY 517

Query: 864  SHSFLEHEEKI-QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
               F + E++  Q     +         +  I     G  DRID  K     + DYK   
Sbjct: 518  LQKFFKTEQEHLQEGWIPVEFERKFSFGVCGIPFE--GRIDRIDK-KGQDFFVLDYKYKR 574

Query: 923  N---PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
            N     K + +   D QL L A A++                 I    + K       + 
Sbjct: 575  NLKIGSKRSIENSKDFQLVLYAMAIQE----------------IHSNAEVKAGFYDIYEA 618

Query: 980  KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            K   ++   +  + L E +   +  ++ F   L          E+ +L 
Sbjct: 619  KIKEEKALIEKKEKLEERLEYYKGMQKEFSFELCKERSPCSFCEFIYLC 667


>gi|254776585|ref|ZP_05218101.1| hypothetical protein MaviaA2_18221 [Mycobacterium avium subsp. avium
            ATCC 25291]
          Length = 1139

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 124/1041 (11%), Positives = 261/1041 (25%), Gaps = 125/1041 (12%)

Query: 45   ASVTIYVPTKRAI----QELRSEFIEITGKK--------STILPIIKSLGDVVEEKFTAD 92
              V     T++A     + +RS    + G            + P    +       F   
Sbjct: 107  GQVLGLTFTRKAAGQLLRRVRSRLARLAGVGLGAASPNHGAVDPEAAPVVS-TYHAFAGS 165

Query: 93   LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAK 150
            LL  Y L  PV    RLL    L  +  + +      L  +   +   S    +W  LA+
Sbjct: 166  LLRDYGLLLPVEPDTRLLSETELWQLAFDVVNRYRGPLRTDKTPAAVTSMVLRLWGQLAE 225

Query: 151  NLADIIDIIETEEKKWEDLHALKNE----KYGMWWLLAADF---------LKIASKYWTE 197
            +L D    +     + E L          +                    L    +   E
Sbjct: 226  HLVDT-SQLRETHLELERLVHALPAGPYQRDRGPSQWLLRLSGTQSERAELVPLLEALDE 284

Query: 198  RLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTV--A 250
            R+  +          +  R      +    ++G    +++     +  A    +S +   
Sbjct: 285  RMRAVKVMDFGMQMASAARLAAAFPQVGADLRGRYRVVLLDEYQDTGHAQRIALSALFGG 344

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
               +G  +    D       W   +  +    +++   S      + +L          +
Sbjct: 345  GVDDGLALTAVGDPIQSIYGWRGASATNLPRFTTDFPRSDGTPAPVLELRTSWRNPPRTL 404

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
            +    +S E   RS+ +      PD         L   +   ++  +D   I+A   R  
Sbjct: 405  RVANAISAEARRRSVAVHALRPRPDAPPGTVRCALLPDVVAERQWIAD--HIDAHYRRAR 462

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A  ++             +A++      A  +   L   GI +++     L +    + L
Sbjct: 463  ADGVS----------PPTAAVLVRRNADAAPIADALRARGIPVEVVGLAGLLSVPEVAEL 512

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             ++L  +       A   ++  P  + G  +      + A  L              + S
Sbjct: 513  VAMLRLVADPTAGAAAMRVLTGPRWRLGARDLAAL-WQRARALGGAGAAGGPATAEAIAS 571

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELA--VLLVDHILQCITPLVTYKTNKNSTCGNL 548
                R                   E    A    +     +                  +
Sbjct: 572  AADPRNVEADAVCLADAIADPGPAEGYSAAGYARIAALAAELSALRAHLDQPLGDLVAEV 631

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
                     V             L        G    +       + S   A  + ++D+
Sbjct: 632  RRVVGLDCEVRAAAAAGWAGTEHLDAFADVVAGYAERADTGGTDASASASVAGLLAFLDV 691

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS--- 665
               + +G    P       + +L    ++ L +  + +  L+ GV+P  TAK  +L+   
Sbjct: 692  AESVENGLPAAPLAVARDRVQVLTVHSAKGLEWQLVAVARLSGGVFPSTTAKTTWLTDAA 751

Query: 666  ---------RVMQSDLNLKTAE------------------------KYIGQAAHDFEMAN 692
                     R     L +   +                        +   +    +    
Sbjct: 752  ELPPLLRGDRARPGALGIPVLDTSDVTNRKQLSDKISEHRRQLEQRRVDEERRLLYVAVT 811

Query: 693  GTRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
                 +             P   S +L  +  +                           
Sbjct: 812  RAEDTLLVSGHHWAATGIKPRGPSDFLCEIKDVIDASAAAGDPCGTVEQWASAPADGERN 871

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                      +P      R         L+    A                 D    +R 
Sbjct: 872  PLRDNVVEAVWPADPLASRRGEVERGAALVRQAMAAEPGDPGADVEGWAADVDALLAERA 931

Query: 810  TLFHNIITELIKKR-------INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF-- 860
             +       L  +        + ++       ++  + S  E   L  +    W   F  
Sbjct: 932  RVTGPPPQVLPGQLSVSSLVGLARDPAGAAQRLRHRLPSRPEPHALLGNAFHAWVQKFYG 991

Query: 861  ---------------------HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
                                  +++       E   ++   + V +P +M I      + 
Sbjct: 992  AECLFELGDLPGAADSDVGDTAELAELQAAFLESPWAARTPVAVEVPFEMPIGDT--LVR 1049

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
            G  D +     G   + D+KTG  P    A +    QL++   A    + +++    V  
Sbjct: 1050 GRIDAVFAESDGGATVVDWKTGAPPDSPEAMRQAAVQLAVYRLAWA--ALAKVPESSVRT 1107

Query: 960  LF-YIRLKQKFKIDCITNDKK 979
             F Y+R +     + +    +
Sbjct: 1108 AFHYVRARTTVVPEALPTSDE 1128


>gi|116749176|ref|YP_845863.1| UvrD/REP helicase [Syntrophobacter fumaroxidans MPOB]
 gi|116698240|gb|ABK17428.1| DNA helicase/exodeoxyribonuclease V, subunit A [Syntrophobacter
            fumaroxidans MPOB]
          Length = 1162

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 112/953 (11%), Positives = 238/953 (24%), Gaps = 73/953 (7%)

Query: 55   RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI--QRLLEL 112
            RA++EL    +          P+ K+ G  +E+           L  PV     + L + 
Sbjct: 228  RAVRELVEVELRALRGAFAGSPLGKAWGSFIEDLENRGASAGTELPRPVPGATWEELPQW 287

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL-ADIIDIIETEEKKWEDLHA 171
             R+      K     K   P S             L + L  D  D +         +  
Sbjct: 288  RRIADALLTKAGAPRKSFGPASGFYSGFGKTPWCNLVRELEGDTADRLHR-------IRE 340

Query: 172  LKNEKYGMWWLLAA----DFLKIASKYWTERLVELNASSPVGYQIALMRAE-------AE 220
            L  ++               L    + + ER            ++A +R          +
Sbjct: 341  LPVKEASRPDAETLFDLILLLHAIIEAYDERCRSRRLLDFSALEMAALRLFDQVRPSDLQ 400

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEK 277
             L+      +++     +     RL+  +       +   +    D       +      
Sbjct: 401  LLLDHRVRHVLVDEFQDTSRQQWRLLRHLFEGWEAGDAKTLFVVGDPKQSIYAFRKAEVM 460

Query: 278  STNITSSNTTYSTHPQYSLAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                  +      H +  L  L+       +   ++    +  +   R        +P  
Sbjct: 461  LFTEAKNGLPIDEHRRLPLESLVLSTNFRSQPHLIQWANGLFGQTVMRDPRPEIDEVPFI 520

Query: 336  TS-DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
             S     T  +E   P     F+      A   RE           + +    +  ++  
Sbjct: 521  PSVASPATRPVECPEPPELALFNGWPAPAAARRREAEWLARNVWEETRESPDTRIGVLLF 580

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
             R           R+ + + ++ G+ L        L  L  A+   +D +A A+ +  P 
Sbjct: 581  ARTHLATYLEAFQRWKVPVQVAEGLKLLERPEVKYLRQLCRALVLPHDDLAWASQLHSPW 640

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
               GF + Y    +     V    +    D            A +            ++ 
Sbjct: 641  LVLGFDDLYAVSLETGDSWVEKIRSFAQKDERVAGFWNGLEAARRHLGHEPLADVMEIAW 700

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             D   A ++                            +  +     L+N       +   
Sbjct: 701  LDLGGARIVSQRWGGRGLACCRRFFQLIREAETHEPVETLRRLEELLENAYEPVDPETAR 760

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                      S +    +     ++ +++    +    +  +    +      +   G L
Sbjct: 761  ----------SGVSVMTVHRAKGLEFDSVYLPFLDWNPVVRQRSSQQPYLLERVPGSGEL 810

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
                 + D L         W      +       +      T  +     +    +   +
Sbjct: 811  FLLAAHPDRLKGEPDPLFSWLARLQADRAWGEAKRLFYVAVTRSRTRLHLSGVVPLRKSS 870

Query: 695  RHLIY-------TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
              LI+         +   +   +  ++         G +     ++      D  R L  
Sbjct: 871  EELIFPPKCPLAWLNEHFDFSESPGAQGFSLPEGSEGGEVPAAWRREWSAGGDALRVLVE 930

Query: 748  TTKQPH-------YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                         Y+  +  P    + R          +  PY             P   
Sbjct: 931  PAPSKPPAGAAETYEPVEIHPAAFERERPLFRITSPSSLALPYDEEEGEEDFEPSAPWES 990

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
             +     RGTL H ++ +       +  P I  +  ++     + E        +     
Sbjct: 991  PETLPRLRGTLVHRLLADFAC---GRKLPSIEAIRSRLGREGMDAEGAGETARSVLAE-- 1045

Query: 861  HKISHSFLEHEEKIQSSIEK---IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
                   LE              +FV    +   +   + L+G  D +     G   + D
Sbjct: 1046 ---VERCLEDPWLSPCFALPPDLLFVEYSLESLHDPREL-LSGKID-LAAYLDGRWRLID 1100

Query: 918  YKTGDNPKKETAQKL-------IDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            YKT      E+A+ L         PQL+             ++  +V    Y+
Sbjct: 1101 YKTSRGKAGESAETLCRRELERYAPQLAAYRQMWAR--LRGVEEGEVEIYVYL 1151


>gi|329891016|ref|ZP_08269359.1| double-strand break repair protein AddB [Brevundimonas diminuta ATCC
            11568]
 gi|328846317|gb|EGF95881.1| double-strand break repair protein AddB [Brevundimonas diminuta ATCC
            11568]
          Length = 235

 Score =  144 bits (362), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 85/225 (37%), Gaps = 5/225 (2%)

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
             H  I  L +   +    +++ ++++++                   L    +      E
Sbjct: 1    MHKAIERLTEDWPDLLPDDLDAVIERLLLEELGAHGFEDAAMAREAPLARNAARWLAGFE 60

Query: 872  EKIQSSIEKIFVNIPAKMAI--ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
               ++   ++ +     +          +  +ADRI++  +    + D+KTG  P  +  
Sbjct: 61   TNRRARGVQLLIEQQGALTFDAPGGPFTVKAYADRIEV-GALSAAVMDFKTGQVPTAKQI 119

Query: 930  QKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
            +    PQL+L  A L AG F +         L Y+R+  + K   +        A  LS+
Sbjct: 120  KAGFAPQLTLTGAILAAGGFKETNGPVPPEELTYVRVVGRKKAGEVAVRAAGPEAQILSD 179

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033
             +L+ L+  V      E P++S        +  S Y+ LARV EW
Sbjct: 180  AALQGLMARVAEFDRPETPYLSWAAPHLMGS-YSPYNLLARVWEW 223


>gi|317010636|gb|ADU84383.1| hypothetical protein HPSA_01810 [Helicobacter pylori SouthAfrica7]
          Length = 778

 Score =  144 bits (362), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 83/482 (17%), Positives = 161/482 (33%), Gaps = 67/482 (13%)

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
           LV    +  +  GNLS S         L+N+ L    +  +        +L    S+I+ 
Sbjct: 315 LVKILEDLENNDGNLSASALLD-----LENLTLSLLEEQSSKEQ----ASLKETHSQIMH 365

Query: 594 TGSCIKANAIEWI--DIITRLIDG--ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
               ++     +   D++   +       +        + ++ TLE+R + FD +++   
Sbjct: 366 QYHLLEDTLKNYSFKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIADF 425

Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNI 708
           NE   P     + FL+  ++  LNL T         H +      ++ ++ +    E + 
Sbjct: 426 NESCVPNLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMVLSYIESETSK 485

Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
              AS  L  L +                  D+  +                        
Sbjct: 486 ---ASNMLLELDLNLKPIKDAYTLFATSPLKDYQEEDIKAAIPK--------------GF 528

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
            +S S +   +      Y   I +       +     +  G+L H ++ E  +   NK+ 
Sbjct: 529 GFSASSLNTFLACKRRFYYHYIKRFRESSKDE---SNSTVGSLLHELLKEAYE--KNKSP 583

Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPA 887
             +   + Q+++    KEN  P   +       KI  +F + E++  +     + +    
Sbjct: 584 DLLKERLIQLLEK---KENTTPKERLDTLIAIEKI-QAFYKKEQQRFNEKTTILDLEKSF 639

Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLI 933
           +  IE  G+   G  DRID      + + DYK               G+    E AQ   
Sbjct: 640 ETTIE--GVLFKGRIDRIDKSTDNEIILLDYKFKSELQLDNMSKKQRGNLSPTEIAQIST 697

Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK-----KYSADELSE 988
           D Q+++ A ALK   +      +    F+  L++   +     D K     +    EL E
Sbjct: 698 DYQMAIYAYALKNLGYK-----EPIKAFFYDLRKGELVGEDELDLKMDYLVRSLIPELKE 752

Query: 989 KS 990
           + 
Sbjct: 753 EI 754


>gi|261839208|gb|ACX98973.1| hypothetical protein HPKB_0364 [Helicobacter pylori 52]
          Length = 778

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 147/438 (33%), Gaps = 49/438 (11%)

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
           DW+   +  L+N+ L    +  +       +  S +  +       +   +++ +  +  
Sbjct: 328 DWSASPLLDLENLTLALLEQQSSKEKAPLKEAHSQIMHQYHLLKDTLTNYSLKDLLHLYL 387

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
                  +        + ++ TLE+R + FD +++   NE   P     + FL+  ++  
Sbjct: 388 QEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCDLFLNSALRKS 447

Query: 672 LNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
           LNL T         H +      ++ ++ +    E +     S  L  L +         
Sbjct: 448 LNLPTLLDKKNLQKHYYYQLFKNSKEMVLSYIESETSKV---SNMLLELDLHIEPIKDAY 504

Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
                    D+  +    T                   ++S S +   +      Y   I
Sbjct: 505 TLFESTPLKDYQEEEIKATIPKD--------------FSFSASSLNAFLTCKRRFYYHYI 550

Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
            +        +       G+L H ++ E  +   +KN   +   + Q+++    +EN+ P
Sbjct: 551 KRFKE-NPKDESNSA--VGSLLHELLKEAYE--KDKNPYALEERLIQLLE---TRENITP 602

Query: 851 HIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909
              +       KI  +F   E++   + I+ + +    +  I+  G+   G  DRID   
Sbjct: 603 KERLDTLIALKKI-QAFYVKEKERFNAKIKILDLEKSFETTIQ--GVAFKGRIDRIDKTA 659

Query: 910 SGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
              V + DYK               G     E AQ   D Q+++ A ALK   +      
Sbjct: 660 DNEVILLDYKFKSELKLDNMSEKQRGSLSPIEIAQISADYQMAIYAFALKNLGYKG---- 715

Query: 956 KVANLFYIRLKQKFKIDC 973
                F+  L++   ++ 
Sbjct: 716 -PIKAFFYDLRKGKLLEE 732


>gi|168210475|ref|ZP_02636100.1| ATP-dependent nuclease, subunit B [Clostridium perfringens B str.
            ATCC 3626]
 gi|170711424|gb|EDT23606.1| ATP-dependent nuclease, subunit B [Clostridium perfringens B str.
            ATCC 3626]
          Length = 1158

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 130/907 (14%), Positives = 263/907 (28%), Gaps = 143/907 (15%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            + LK     +  RL E         Q+ L+  + +         I I   +   P    +
Sbjct: 156  EELKDVFNEFNSRLHE-GYVDE-EDQLLLLNEKLDGCSLYDGAEIWIDEFSSFTPNQLSV 213

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            +  +        +   +D        + +   + N               L  L+    I
Sbjct: 214  IGKLLKRAKSVNITLSIDEVNSPKGESDLFVATKNTEK-----------RLMNLIQEEGI 262

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                   L    +  +  +  ++           +                + + L  A+
Sbjct: 263  AFNGYINLNEDISYRFKENKELAHIERQLYAYPFKQYRGKN----------NSLRLYRAN 312

Query: 366  NEREEAISIAIALRMSLDE---NKKKSALITADRN-LARRVKLELTRFGINIDISAGIPL 421
            N  +E   +A  +   + E     K  ++I  D +   + V      + I   I   I +
Sbjct: 313  NNYDEIEFVAKDILRLVREKQYRFKDISVICRDVDNYEKVVSAIFAEYEIPYYIDKKIDI 372

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            ++      + S ++ I K   + ++   +K  L K        +   + LE   L     
Sbjct: 373  ASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRG-VEGAELIDELENYVLAYGIK 431

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                M+    V    +  K           +SEE+K+    L D     +TPL  +    
Sbjct: 432  GKKWME--EWVNYSSSILKEEE--------VSEENKQRLERLNDIRETIVTPLDEFNKQC 481

Query: 542  NSTCGNLSISDWT-KLTVTCLQNVCLDE---------HRKLPNLWFEEEGKTLSSLFSKI 591
                     +    +   + L  +   +            +    + E       +  + 
Sbjct: 482  KGKKTLKEFATILYEFLDSKLDIMDTIDKYVEYFKENDMAIEAKEYSEVRDIFIDVLEQA 541

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            ++       N  E++ ++   +    +         + I      +      L + G+N+
Sbjct: 542  VDVLGNEVMNLDEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVND 601

Query: 652  GVWPKNTAKNPFLS---RVMQSDLNLKTA---------EKYIGQAAH------------- 686
            GV P  + +   LS   R +  +  +  A         E+++   A              
Sbjct: 602  GVLPSASKEEGILSDNDREILLEKGISLASDTRTKIFEEQFLVYTAFTIAEEYLVVTYPL 661

Query: 687  -DFEMANGTRHLIYTRSLRENNIPTIAS-----------------RWLQRLL-----VLG 723
             DFE  +    +I  R  +        S                   L  L+        
Sbjct: 662  ADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVNDKYDKISAKIPTLNELMIAIRKNYD 721

Query: 724  GTDFFDNLKKRGQCYLD---WTRKLDYTTKQPHY---------KRPKPFPPLEAQPRTYS 771
            G +  D  K     YL    W  +++Y  K   Y         ++ K          + S
Sbjct: 722  GAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYEDNKNKISLS 781

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT--- 828
             S +++    P+A Y +  LK         +    D G+  H I+ E   +   K+    
Sbjct: 782  VSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDLKWS 839

Query: 829  ----PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSI 878
                    +++  ++D+  +      L       +    F +I      +  E+  +S  
Sbjct: 840  DLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKRSDF 899

Query: 879  EKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGDNP- 924
            E     +           K+ +      +L G  DR+D L   G   + I DYKTG    
Sbjct: 900  EIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGSKKF 959

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
                    +  QL +   AL   S + + +      + Y R+      D I   K   + 
Sbjct: 960  DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGDLTE 1014

Query: 984  DELSEKS 990
            +E+  + 
Sbjct: 1015 EEIKSEV 1021


>gi|258652355|ref|YP_003201511.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
 gi|258555580|gb|ACV78522.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
          Length = 1106

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 124/1026 (12%), Positives = 254/1026 (24%), Gaps = 154/1026 (15%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPII--------KSLGDVV---EEKFTADLL 94
             V     T++A   L     +     +T+ P             GD        F   L+
Sbjct: 62   QVLGLTFTRKAAAALAQRIRQRLALLTTLRPRTGSGRSPADLPAGDPDVSTYHAFGGRLI 121

Query: 95   LSYNLNPPVSNIQRLLELARLILIWRNKLP----DIIKDLYPESPLSLPISPANAIW--- 147
              +     +    R+L       + R  +     D++ DL P+      ++ ++A+    
Sbjct: 122  ADFGPLAGIEPAARVLTPTGAWQLARRVVGRWDGDLLTDLGPDQVTERLLAISSALADHL 181

Query: 148  -----LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD--FLKIASKYWTERLV 200
                 L+  LA ++D + +         AL +           D  ++      +     
Sbjct: 182  TDVDLLSDELATVLDRLRSAPPGPRQRAALHSG-LAGPVKRLQDRQWILPLVAAYVRAKR 240

Query: 201  ELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTV------ 249
            +                  EH      M+     +++     +  A   ++ ++      
Sbjct: 241  DRGVVDFADQMQIAATLVREHPRIGEAMRERYRVVLLDEYQDTGHAQRVILRSLFGDRDG 300

Query: 250  -------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
                        G  V    D       W   +  +     ++   ++    S+  LL  
Sbjct: 301  AGRAGGHGQARWGHPVTAVGDPVQSIYSWRGASASNLPRFVTDFPLASGRPSSIRSLLTS 360

Query: 303  LDIKREDVKRLGNVSNEMY--GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                   +     VS  +   GR++ + +    P     R    L               
Sbjct: 361  FRNPGAVLALANEVSRPVRQGGRAVEVGELRPTPAADPGRLRYGLFGTAEQENAWL---- 416

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKS-----ALITADRNLARRVKLELTRFGINIDI 415
                      A +IA   R +LDE    +     A++   R+        L   G+ +++
Sbjct: 417  ----------AEAIAGYWRDALDEGGAGATPPTTAVLVRRRSDMADTADALRAAGLPVEV 466

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                 L      + L + L  +       A   L+     + G  +     A+       
Sbjct: 467  VGLGGLLDEPEVADLVATLRVLVDPTAGPAAMRLLTGARWQLGAADLEALAARARELAGP 526

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNT--HVPHWQSRLSEEDKELAVLLVDHILQCITP 533
             R               + R A         +  W    +  D   A        + +  
Sbjct: 527  ARPADGHGAGGPADPTAVVRSAVAAALPVEDIDTWSMVDAAGDLGPAQAYSAAGHRRLVR 586

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
               +     +   N  + D                  +              +     + 
Sbjct: 587  FAAHLARLRA-RLNQPLPDLIADLERACH-----LDVESLVAGTGRAHLDAFAAVVAEVA 640

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                  A  +E++D      DG T     + S  + +L    ++ L ++ + +  L EGV
Sbjct: 641  ATGAGPAELLEYLDAAAEREDGLTPGEVPQPSGRVQVLTVHAAKGLEWEIVAVPHLTEGV 700

Query: 654  WPKNTAKNPF-----LSRVMQSDLNLKT-------------------------AEKYIGQ 683
            +P             L   ++ D +                              +   +
Sbjct: 701  FPITRGSTWLGDPAQLPPQLRGDRDDLPQLAWPAGGTQKDLADALAAHAAEFGELRLTEE 760

Query: 684  AAHDFEMANGTRHLIYTRSLREN---NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                +         +             P   S +L+    L       +         +
Sbjct: 761  RRLLYVALTRAERTLLFSGHHWGTGLAKPAGPSPFLEECAALARPFAEPDEWAPPPATDE 820

Query: 741  WTRKLDYTTKQP-------------------------HYKRPKPFPPLEAQPRTYSFSEI 775
              + L  T   P                             P+P              + 
Sbjct: 821  GQQLLPRTAVWPIDPLGPRRPHVQVGADRVLQALADLAAAEPEPVEDRPGTADEVDTGDP 880

Query: 776  KQLINDPYAVYARRILKLDFIPHFKK------------DPDRTDRGTLFHNIITELIKKR 823
                 D   + A R  +   +   +               D  +        +      R
Sbjct: 881  FGWAADVTTLLAERSDRGREVHEVELPGTITVTSLVELADDPAELARRLTRPVPTESSGR 940

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---HLFHKISHSFLEHEEKIQSSIEK 880
            +++ T     L  +       + +  P     W         +   FL      +     
Sbjct: 941  LSRGTDFHAWLEHRFRGEALLELSDLPGAGDAWVGADPEIEDLKRRFLASPWADR---VP 997

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
            I V +P    I  +G+   G  D I     G + + D+KTG +P +E A      QL+  
Sbjct: 998  IDVEVPFASRIAGLGV--RGRVDAIFADADGGITVVDWKTGHSPLREDAA---AVQLACY 1052

Query: 941  AAALKA 946
              A+  
Sbjct: 1053 RLAIAQ 1058


>gi|6626266|gb|AAF19531.1| hypothetical protein [Bradyrhizobium japonicum]
          Length = 231

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 11/201 (5%)

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            E  ++   +   +   +++ I + HF      P    +W   F +I+  F E E   +  
Sbjct: 28   EFTERYATRLPDDPARVLRAIGEKHFAPLMERPEARALWWPRFQRIARWFSEWETARRDV 87

Query: 878  IEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
            +E I      +++I         L+  ADRI+  + G   I DYKTG  P  +  +  + 
Sbjct: 88   VEAITAETRGEISITLDNERSFRLSARADRIERRQGGGYAILDYKTGQPPTGKQVRMGLS 147

Query: 935  PQLSLEAAALKAGSFSQIDCR-KVANLFYIRLKQKFKIDC-------ITNDKKKYSADEL 986
            PQL+LEAA L+ G F  ID    V+ L Y+RL                    +    D  
Sbjct: 148  PQLTLEAAILREGGFPDIDAGSSVSQLVYVRLSGNNPPGEERILELKYKQGDEPQPPDIA 207

Query: 987  SEKSLKNLIEIVTLLQNGEQP 1007
            + ++   L  ++   +   +P
Sbjct: 208  AAEARAKLEALIRAFETRTRP 228



 Score = 39.9 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 30/99 (30%)

Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
           + T    W  L  L  ++   +W  + +F +  +    +    +  +    +   LM   
Sbjct: 1   MVTRGVDWSALDGLVPDQLDRYWQHSLEFTERYATRLPDDPARVLRAIGEKHFAPLMERP 60

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
               +   +   I    +    A   ++  +     G I
Sbjct: 61  EARALWWPRFQRIARWFSEWETARRDVVEAITAETRGEI 99


>gi|315453532|ref|YP_004073802.1| hypothetical protein HFELIS_11280 [Helicobacter felis ATCC 49179]
 gi|315132584|emb|CBY83212.1| putative hypothetical protein [Helicobacter felis ATCC 49179]
          Length = 768

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 81/594 (13%), Positives = 177/594 (29%), Gaps = 67/594 (11%)

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                 +   +    + PL          ++  + + L   R  +   + +D  +L +   
Sbjct: 226  ALSRGENPIVQATPQTPLCADHISIYAFNQRLDQVGLALQRVQEWLSEGLDPSTLAIITP 285

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
            + +  +              +     + +        L   KT   +   +  +    + 
Sbjct: 286  SAEILSALKLLDLGHNLNFARG--ENVQEVFAPLFKDLEALKTTLQTCQTSNPLITLQEH 343

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW--IDIITRLID 614
            T   L+                     L     +  ET   I +N  ++  +D++   + 
Sbjct: 344  TQALLEKYTA---------------HKLQDFHQEFFETYHAIASNLQQYSVVDLLELYMR 388

Query: 615  G-ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
              + V+        + +L  LE R L+F+ +++   N+ + P     + FL+   ++ L 
Sbjct: 389  NLQEVRLDHTTGGKVKVLDVLECRGLHFERIVILDFNDRLVPSVQDSDLFLNTFTRTALG 448

Query: 674  LKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
            + T E       H +      T H+    S  +N IP+        L  L         +
Sbjct: 449  IPTLEDRENLQKHYYYQLLKNTSHVDIAYSCAQNAIPSKM------LAELSLETPLPEKE 502

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
            +         R  ++         P            +S ++IK  +      Y + + K
Sbjct: 503  ENEFVIFPQARTWEFV--------PDKIIERIPSDFKFSATKIKDFMACKRRFYLQYLAK 554

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN--HLMKQIIDSHFEKENLPP 850
            L   P         + G+L H I+         +NT          +      E      
Sbjct: 555  LTPAPQESF-----NMGSLLHTILEAYYSGSHYQNTHAPITFDSFLKTA-QSLESYANLN 608

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
             +  +   +  +    F   E    +  + +      + +I   G   +G  DRID   +
Sbjct: 609  ALQRLELEVVAQKLAPFFACETGKLARAQVVACEQRFETSI--GGFSFSGIIDRIDQNSA 666

Query: 911  GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
            G  D+ DYK       +  ++    QL++ A   ++  +         ++++  LK+   
Sbjct: 667  GGYDLLDYK--FKSALKPQEEGY--QLAIYALGAQSLGY------TPEHIYFYDLKEG-- 714

Query: 971  IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
                  +K      E  E  L+ L      +   +            +     Y
Sbjct: 715  ---CLLEKSLSELQEDQEGLLEVLESCQQTIDFDQTE-------DRSACTYCAY 758


>gi|229490998|ref|ZP_04384831.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121]
 gi|229322114|gb|EEN87902.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121]
          Length = 1130

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 119/1042 (11%), Positives = 264/1042 (25%), Gaps = 149/1042 (14%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST--ILPIIKSLGD 83
            +   +V       ++P     V     T++A Q+L S   +   + +   +L  +   G 
Sbjct: 56   MAARVVWLVANGFVDPEA---VLGLTFTRKAAQQLTSRIRKRLARLAGSDVLRALDPTGG 112

Query: 84   VVEEKFTADL------------LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            V       +             L  + L  P+     LL    L  +    +     DL 
Sbjct: 113  VRSRILAGEPEVSTYHAYAGRLLSEHGLLLPIEPSATLLSETELWQVAHRVVSGWDSDLD 172

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD----- 186
             +            + LA  LA+ +   E   +   +L  L +                 
Sbjct: 173  TDKNPGSITET--VLALAGQLAEHLVDPEQLLEAHTELDKLIHTLPAGPKQRGGPSKELL 230

Query: 187  ----------FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPII 231
                       L        E L    A           R  +EH       +     ++
Sbjct: 231  NYLDVQHKRIELLPLVARLGETLRREGALDFGSQMSLSARVASEHPEVGQTERERFRVVL 290

Query: 232  IAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            +     +  A   L+S++          +    D       W   +  +    +++   +
Sbjct: 291  LDEYQDTGHAQRVLLSSLFGGGADGRLALTAVGDPMQSIYGWRGASAANLPRFATDFPLA 350

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                    +LL       E ++     S  +  R + +S     P          L   +
Sbjct: 351  NGKPAPTLELLTSWRNPPEALELANLSSAPLRRRGVAVSTLRARPGAVAGDVRLALLGDL 410

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
               ++  +            E I+       + D     +A++      A  +   L   
Sbjct: 411  EQERQWVA------------EKIAEEYEAARAEDRPTPTAAVLIRRNADAAPLAEALRSK 458

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            G+ +++     L  T   + + ++L  +       A   L+    A++    K L+    
Sbjct: 459  GLPVEVVGLGGLLHTPEVADVIAMLRVVADPLAGSAAVRLLTG--ARWQIGAKDLAALSQ 516

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                +A+     +   +     +   +       +        S  D   A         
Sbjct: 517  RSRELAISAGYGTAGAVTDAEALTSAVQDALPGENAEQAGLVDSISDPGPAERYSALGYT 576

Query: 530  CITPLVTYKTNKNSTCG--NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
             I  +     +     G     +    +  +             +      E     + +
Sbjct: 577  RINAIAAELASLRERIGQPLTELVAEVERVLGIGIEAGARTRVGVVGTAGREHLDAFADV 636

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
             +      +      + +     ++  G T          + IL    ++ L ++ + + 
Sbjct: 637  VANYATRPTANLPGMLAFFAAAEQIEKGLTPGEVEVAPDRVQILTVHSAKGLEWEVVAIP 696

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------------------- 678
             +++GV+P +TA   +L  + +   +L+                                
Sbjct: 697  HVSDGVFPSSTASGSWLGALAELPPSLRGDRAVDADSADGVPVLDLEELYNRKDLENAIT 756

Query: 679  --------KYIGQAAHDFEMANGTRHLIYT----RSLRENNIPTIASRWLQRLL---VLG 723
                    + + +    F +A                   + P   S +L  L       
Sbjct: 757  AHKKALSNRRLDEDRRLFYVALTRTERALFISAHHWAESGSEPKGPSEFLDELHQMVTAE 816

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK-------RPKPFPPLEAQPRTYSFSEIK 776
                 ++ +       +W    +  T+ P           P P           + S + 
Sbjct: 817  NDADEEDSRGAIGVVEEWAPAPEPDTENPLAATPRTAQWPPDPLGARRGAVEAGAASVLS 876

Query: 777  QLINDPYA--------------------VYARRILKLDFIPH------------FKKDPD 804
             L + P                      + A R  + +                     D
Sbjct: 877  ALASLPQDSQEAEEPEDDPENWASDVDVLLAEREARANARAEVILPAQLSVTQLVDLKAD 936

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID---IIWRHLFH 861
              +        +         + T     + ++   +     +  P              
Sbjct: 937  PDELAARLRRPLPYPPNPLARRGTAFHAWIERRFGATRLLDLDELPGAADTGAGPETDLV 996

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
            K+  +FL      +S    I V +P + +I      L G  D +     G   + D+KTG
Sbjct: 997  KLQDAFLRSPWANRS---PIEVEVPFETSIAGT--VLRGRIDAVFADPDGGWTVIDWKTG 1051

Query: 922  DNPKKETAQKLIDPQLSLEAAA 943
              P     +  +  QL+    A
Sbjct: 1052 AEPSAAN-EDAVVMQLAAYRVA 1072


>gi|313812634|gb|EFS50348.1| UvrD/REP helicase [Propionibacterium acnes HL025PA1]
          Length = 1072

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 108/1061 (10%), Positives = 264/1061 (24%), Gaps = 146/1061 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     T +A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     +S    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160

Query: 138  LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184
                    + LA  +A        +   + +W  +                  W      
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+        +S       D     + +  I     
Sbjct: 341  QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLIAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWAKECQTCADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +       H+            E     +  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +    +    L +   +
Sbjct: 567  IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
               +   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            +GV+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QGVFPSTSTSDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711
             +      +  +                                     R   +    T 
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               + + +      +   ++   GQ       + D        +R        A P   +
Sbjct: 800  WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADALLKDARRHIDLQDEVALPPRLT 859

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S+I +L  +P A   R  L+        +       GT FH  +++ +         + 
Sbjct: 860  TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889
              + +       ++E++      +        +   L    EE   +    + V     M
Sbjct: 915  EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968

Query: 890  AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             I      + G  D +       G   + D+KT      +        QLS+   A    
Sbjct: 969  TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                ID  +V    +  +     I           A  L+ 
Sbjct: 1021 --RGIDPSRV-RAVFYHVGANETISAEPLLDADQVAAILTA 1058


>gi|170079561|ref|YP_001736194.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002]
 gi|169887230|gb|ACB00939.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002]
          Length = 1075

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 98/879 (11%), Positives = 212/879 (24%), Gaps = 103/879 (11%)

Query: 169  LHALKNEKYGMWWLLAAD-FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK--- 224
            L  L   +    W+       +   +   E   +         +I  ++A  +  ++   
Sbjct: 293  LGELDERE--TQWVTTLQGAFQWVEQRLKEIKQQARVLDFNDLEIYALKALEDPAVRDYY 350

Query: 225  -GTKGPIIIAGSTGSIPATARLMSTV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
                   +I     + P   +L+  +       + +    D       +     +     
Sbjct: 351  KERWRAYLIDEFQDTNPTQGKLLEALTGRSEEQSKLTIVGDDKQSIYGFRRADVEVFRAW 410

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
             S          S       +       + +    ++        +              
Sbjct: 411  RSQLNNGVALTQSFRTHESLVKNINTVFRPVLGELHQDLDAHRQEAPHDPLHLEIYRFAP 470

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402
                      +     +A +  +   +E +    A R       K  A+++   +     
Sbjct: 471  KEKMAIAEARKVEAQQIAQLIYEMLSQEMLVWDKATRKLRAIAPKDIAILSRTWDPLDIY 530

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
               L ++ I    S+G  L  T  +    SLL  I   ND +A+  +++ P         
Sbjct: 531  SQALAQWQIPFLQSSGGNLLDTPEALDGLSLLQFIANPNDDLALVAVLRSPFLTLSDRLL 590

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
            Y  R          +  K    + D       +   Q+  T +    ++         + 
Sbjct: 591  YELR-------PQKKDKKWWSCLKD-----SQQPEVQQRVTILKQLLNKRDIFTPSQLLQ 638

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            L D +      +      +          +  +      Q              F+  G 
Sbjct: 639  LADQLTGYSAVITNLPQAERRLADWRGFLELLRHLE---QGTGDVLSVVRRLQRFQRHGV 695

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             +     +     S +  +A + ++    ++   T K     SS L            FD
Sbjct: 696  KIPRPPLEAENAVSLMTIHAAKGLEWSVVIVPDLTRKLSNTSSSIL------------FD 743

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTR 701
                  L +        K+     +       +TAE         +      R  LI T 
Sbjct: 744  PEFGVALKQRDDQGKLQKSVLFQLLEGHQKERETAEAK----RVLYVALTRARDRLILTT 799

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
               +     +    L         D   +L    + + +                P    
Sbjct: 800  PKEKGGGLDLLQPGL---EDFAIKDISPDLYPPAEPWCEGDESSKPQQPPQLLLEPA--- 853

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
               +       + +      P   Y  +I++   +   + +      G+L H  + +  +
Sbjct: 854  --RSYGLELPMTALTTYARCPKKFYFEQIIRHPGLTEGESNYGAA-IGSLTHTALEKDYQ 910

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                 N                +   LPP        L                      
Sbjct: 911  TVEQLNFHN-------------QDLKLPPDKVQEALDLAQTF--------RTDPVFAAVQ 949

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
                   + +    + L G AD +     G   + D KT   P     +     QL   A
Sbjct: 950  AGEKEIALELRQNQLVLNGRADLV-----GTNFVLDVKTDSKPNPIEHR----FQLWAYA 1000

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
             A +            A + Y+R +Q +             AD L ++  +         
Sbjct: 1001 RAAEK---------PTAYIAYLRQRQLYTFSPTDLKSIDQEADILMQQIAQR-------- 1043

Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYDIS 1040
                  +    +          Y+ +    +     ++S
Sbjct: 1044 -----DYT--PKPHSDHCSYCPYNWICDAGKSALAGELS 1075


>gi|319757985|gb|ADV69927.1| ATP-dependent nuclease, subunit B [Streptococcus suis JS14]
          Length = 1088

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 108/939 (11%), Positives = 251/939 (26%), Gaps = 123/939 (13%)

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
           + +  L +             L  +   ++       DL A+ +             L  
Sbjct: 97  FEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMDSPD-------KQADLVK 149

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249
                T+ L +                E   L +  K  + ++ G +        L+S +
Sbjct: 150 IFLAVTDILSKEGFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSAL 209

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
               +  ++          A +    E +    + +       Q+               
Sbjct: 210 NERVSEILIGVYASKKAVQATYA---EGNVYQANVDFLRQLSAQFQTKATYIG------- 259

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                            I K     +     +  +++   P+ +K    + L E  N++E
Sbjct: 260 ----------QEPVLDSIGKFSKNMEAYYDYSGTMIDLTPPDQEK----IQLWEVVNQKE 305

Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426
           E   +A A+R  + +    K   L+  D +  +        ++ I         +S    
Sbjct: 306 EVEQVATAIRQHVHQGARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPL 365

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              + SL            +  L+K  L            + +  EL          D+ 
Sbjct: 366 VHFVESLERLRRYRFRAEDLLNLLKSGL----------YASISQKELDLFESYILFADMK 415

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
              +         + +      + +    D  +   L   I++ +  L        +   
Sbjct: 416 GQAAFSRAFSVNGRADYDAEVIKEKRLVYDLTVLEPLRAKIMEPLNQLFKAGPQSGTALL 475

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              ++    + +            ++     E+  K+ + L     +     K    +++
Sbjct: 476 EKFMAFLEAIDLPKNMEKMSRNLSEVEQEKEEQVWKSFTHLLENFHQIFGKEKLKMDDFL 535

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            I+   +     +        + +             +   G+ +  +PK       L+ 
Sbjct: 536 AILQAGMQASHYRTVPATVDVVNVKSYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTE 595

Query: 667 VMQS----------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRW 715
                           +L + E      A    + N     L+ +     N      S +
Sbjct: 596 EEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNSATEQLVISTPQIYNEGEDSLSPY 655

Query: 716 LQRLLVLG------------------------------GTDFFDNLKKRGQC--YLDWTR 743
           ++ L  +G                                   +  +  GQ   +    R
Sbjct: 656 IKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLETEEWEGQRAFWTVLVR 715

Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRT---------------YSFSEIKQLINDPYAVYAR 788
            L    +    + P     + ++  +                S S +    N+ Y  + R
Sbjct: 716 HLKKKLESQSIEIPTITGDIASKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVR 775

Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE--INHLMKQIIDSHFE-K 845
            +L+L         P     G   H I   ++  +   +  +     +++   ++ F   
Sbjct: 776 NVLRLREQESIH--PTAFQHGLFLHRIFERVVMDQSELDFDQKVDKAILRTRDEAEFAMF 833

Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAK----MAIE---SIGIH 897
            N           +  KI+ S         + + +I       +    +  +      +H
Sbjct: 834 YNQDADARYTE-EVLDKIARSSAT--ILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVH 890

Query: 898 LTGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
           + G  DR+D L+ +  V + DYK+   +         + PQL    AAL+     +   +
Sbjct: 891 VNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQE--LDETKDK 948

Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            V    Y+ L+        T + ++      +    K L
Sbjct: 949 PVFGAMYLHLQDPIIKLKDTKNLEQLEGAANTSLVYKGL 987


>gi|253751553|ref|YP_003024694.1| ATP-dependent exonuclease subunit B [Streptococcus suis SC84]
 gi|251815842|emb|CAZ51450.1| putative ATP-dependent exonuclease subunit B [Streptococcus suis
           SC84]
          Length = 1088

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 107/939 (11%), Positives = 246/939 (26%), Gaps = 123/939 (13%)

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
           + +  L +             L  +   ++       DL A+ +             L  
Sbjct: 97  FEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMDSPD-------KQADLVK 149

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249
                T+ L +                E   L +  K  + ++ G +        L+S +
Sbjct: 150 IFLAVTDILSKEGFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSAL 209

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
               +  ++          A +    E +    + +       Q+               
Sbjct: 210 NERVSEILIGVYASKKAVQATYA---EGNVYQANVDFLRQLSAQFQTKATYIG------Q 260

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
              L ++             S    D +                     + L E  N++E
Sbjct: 261 EPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQ---------------EKIQLWEVVNQKE 305

Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426
           E   +A A+R  + +    K   L+  D +  +        ++ I         +S    
Sbjct: 306 EVEQVATAIRQHVHQGARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPL 365

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              + SL            +  L+K  L            + +  EL          D+ 
Sbjct: 366 VHFVESLERLRRYRFRAEDLLNLLKSGL----------YASISQKELDLFESYILFADMK 415

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
              +         + +      + +    D  +   L   I++ +  L        +   
Sbjct: 416 GQAAFSRAFSVNGRADYDAEVIKEKRLVYDLTVLEPLRAKIMEPLNQLFKAGPQSGTALL 475

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              ++    + +            ++     E+  K+ + L     +     K    +++
Sbjct: 476 EKFMAFLEAIDLPKNMEKMSRNLSEVEQEKEEQVWKSFTHLLENFHQIFGKEKLKMDDFL 535

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            I+   +     +        + +             +   G+ +  +PK       L+ 
Sbjct: 536 AILQAGMQASHYRTVPATVDVVNVKSYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTE 595

Query: 667 VMQS----------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRW 715
                           +L + E      A    + N     L+ +     N      S +
Sbjct: 596 EEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNSATEQLVISTPQIYNEGEDSLSPY 655

Query: 716 LQRLLVLG------------------------------GTDFFDNLKKRGQC--YLDWTR 743
           ++ L  +G                                   +  +  GQ   +    R
Sbjct: 656 IKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLETEEWEGQRAFWTVLVR 715

Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRT---------------YSFSEIKQLINDPYAVYAR 788
            L    +    + P     + ++  +                S S +    N+ Y  + R
Sbjct: 716 HLKKKLESQSIEIPTITGDIASKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVR 775

Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE--INHLMKQIIDSHFE-K 845
            +L+L         P     G   H I   ++  +   +  +     +++   ++ F   
Sbjct: 776 NVLRLREQESIH--PTAFQHGLFLHRIFERVVMDQSELDFDQKVDKAILRTRDEAEFAMF 833

Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAK----MAIE---SIGIH 897
            N           +  KI+ S         + + +I       +    +  +      +H
Sbjct: 834 YNQDADARYTE-EVLDKIARSSAT--ILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVH 890

Query: 898 LTGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
           + G  DR+D L+ +  V + DYK+   +         + PQL    AAL+     +   +
Sbjct: 891 VNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQE--LDETKDK 948

Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            V    Y+ L+        T + ++      +    K L
Sbjct: 949 PVFGAMYLHLQDPIIKLKDTKNLEQLEGAANTSLVYKGL 987


>gi|327329920|gb|EGE71674.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
            HL097PA1]
          Length = 1072

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 108/1061 (10%), Positives = 264/1061 (24%), Gaps = 146/1061 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     T +A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     +S    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160

Query: 138  LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184
                    + LA  +A        +   + +W  +                  W      
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRRGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+        +S       D     + +  I     
Sbjct: 341  QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLIAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWAKECQTCADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +       H+            E     +  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +    +    L +   +
Sbjct: 567  IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
               +   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            +GV+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711
             +      +  +                                     R   +    T 
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               + + +      +   ++   GQ       + D        +R        A P   +
Sbjct: 800  WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADALLKDARRHIDLQDEVALPPRLT 859

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S+I +L  +P A   R  L+        +       GT FH  +++ +         + 
Sbjct: 860  TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889
              + +       ++E++      +        +   L    EE   +    + V     M
Sbjct: 915  EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968

Query: 890  AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             I      + G  D +       G   + D+KT      +        QLS+   A    
Sbjct: 969  TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                ID  +V    +  +     I           A  L+ 
Sbjct: 1021 --RGIDPSRV-RAVFYHVGANETISAEPLLDADQVAAILTA 1058


>gi|317405926|gb|EFV86205.1| hypothetical protein HMPREF0005_02666 [Achromobacter xylosoxidans
            C54]
          Length = 536

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 63/541 (11%), Positives = 148/541 (27%), Gaps = 45/541 (8%)

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
            +              +  +                     S   W       L  +    
Sbjct: 1    RRGQVHVGAAEWRKQLAALPPLAQAWDQAMEIWTRGGARASCDVWMLRMKAALTALGFPG 60

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
               L ++ ++  G    +L        +  K   +  ++++  +    + +P+ + S+ L
Sbjct: 61   EGVLDSVGYQALGALGEALGGFSALAPAAGKLGGVAAVNLLQSVARSASFQPQRDPSARL 120

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAH 686
             +LG LE+    +D + + GL + V P +   NP L   +         T E+    A  
Sbjct: 121  DVLGLLEAEGGFWDGIWILGLTDDVLPASPKPNPLLPLAVLRQAKAPRATPEREREWAEG 180

Query: 687  DFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
             +         +I + +  +       S  +                     +       
Sbjct: 181  IYAALCRCAPQVIVSHAHMDGERELRPSPLIAA--------------AAPTDWRPAPVAA 226

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                 Q      +  P             +     +P   + R  L    +  +      
Sbjct: 227  VAALPQESLDDMRGPPLAADDRGGGGLDVLDTQARNPLWAFVRHRLGGRELAPYADAATV 286

Query: 806  TDRGTLFHNIITELIKKRIN-----------KNTPEINHLMKQIIDSHFEKENLPPHIDI 854
              RG   H  +  +     +           +    +   + Q  D   ++    P +  
Sbjct: 287  NVRGQFLHKALELVWGMLPDQEALHETLAQGRLPALLEQAVAQAADEELQEYA--PALKA 344

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914
            +       +  ++L+ E +         V    +    ++ + L    DRID L  G   
Sbjct: 345  LECARARTVLAAWLDMEAQRLP-FAVAQVEKNHQWRHGALHLKL--RLDRIDTLADGRNV 401

Query: 915  ITDYKTG----DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
            I DYKTG          +  + ++ QL   A+ L   +  ++    +A +   ++  +  
Sbjct: 402  IVDYKTGVAAAKPEPDWSRSRPVNVQLPFYASVLADAAGGEVAGLVLAQIHARQVAAQGL 461

Query: 971  IDCITNDKKKYSADE-------LSEKSLKNLIEIVTLLQNG-EQPFISHLRLSEKSNIQS 1022
             D     +    A E          +  +     +  L +     + +++          
Sbjct: 462  ADEDLGMEGVTLAAESKYFDGLSWPEIRQRWRAAIESLADEYVAGYAANVAYRRDDLKYC 521

Query: 1023 E 1023
            +
Sbjct: 522  D 522


>gi|226305706|ref|YP_002765666.1| ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
 gi|226184823|dbj|BAH32927.1| putative ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
          Length = 1130

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 119/1042 (11%), Positives = 262/1042 (25%), Gaps = 149/1042 (14%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST--ILPIIKSLGD 83
            +   +V       ++P     V     T++A Q+L S   +   + +   +L  +   G 
Sbjct: 56   MAARVVWLVANGFVDPEA---VLGLTFTRKAAQQLTSRIRKRLARLAGSDVLRALDPTGG 112

Query: 84   VVEEKFTADL------------LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            V       +             L  + L  P+     LL    L  +    +     DL 
Sbjct: 113  VRSRILAGEPEVSTYHAYAGRLLSEHGLLLPIEPSATLLSETELWQVAHRVVSGWDSDLD 172

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD----- 186
             +            + LA  LA+ +   E   +   +L  L +                 
Sbjct: 173  TDKNPGSITET--VLALAGQLAEHLVDPEQLLEAHTELDKLIHTLPAGPKQRGGPSKELL 230

Query: 187  ----------FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPII 231
                       L        E L    A           R  +EH       +     ++
Sbjct: 231  NYLDVQHKRIELLPLVARLAETLRREGALDFGSQMSLSARVASEHPEVGQTERERFRVVL 290

Query: 232  IAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            +     +  A   L+S++          +    D       W   +  +    +++   +
Sbjct: 291  LDEYQDTGHAQRVLLSSLFGGGTDGRLALTAVGDPMQSIYGWRGASAANLPRFATDFPLA 350

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                    +LL       E ++     S  +  R + +S     P          L   +
Sbjct: 351  NGKPAPTLELLTSWRNPPEALELANLSSAPLRRRGVAVSTLRARPGAVAGDVRLALLGDV 410

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
               ++  +            E I+       + D     +A++      A  +   L   
Sbjct: 411  EQERQWVA------------EKIAEEYEAARAEDRPTPTAAVLIRRNADAAPLAEALRSK 458

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            G+ +++     L  T   + + ++L  +       A   L+    A++    K L+    
Sbjct: 459  GLPVEVVGLGGLLHTPEVADVIAMLRVVADPLAGSAAVRLLTG--ARWQIGAKDLAALSQ 516

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                +A+     +   +     +   +       +        S  D   A         
Sbjct: 517  RSRELAISAGYGTAGAVTDAEALTSAVHDALPGENAEQAGLVDSISDPGPAERYSALGYT 576

Query: 530  CITPLVTYKTNKNSTCG--NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
             I  +     +     G     +    +  +             +      E     + +
Sbjct: 577  RINAIAAELASLRERIGQPLTELVAEVERVLGIGIEAGARTRVGVVGTAGREHLDAFADV 636

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
             +      +      + +     ++  G T          + IL    ++ L ++ + + 
Sbjct: 637  VANYATRPTANLTGMLAFFAAAEQIEKGLTPGEVEVAPDRVQILTVHSAKGLEWEVVAIP 696

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------------------- 678
             +++GV+P +TA   +L  + +   +L+                                
Sbjct: 697  HVSDGVFPSSTASGSWLGALAELPPSLRGDRAVDADSADGVPVLDLEELYNRKDLENAIT 756

Query: 679  --------KYIGQAAHDFEMANGTRHLIYT----RSLRENNIPTIASRWLQRLL---VLG 723
                    + + +    F +A                     P   S +L  L       
Sbjct: 757  AHKKALSNRRLDEDRRLFYVALTRTERALFISAHHWAESGAEPKGPSEFLDELHQMVTAD 816

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK-------RPKPFPPLEAQPRTYSFSEIK 776
                 ++ +       +W    +  T+ P           P P           + S + 
Sbjct: 817  NDAGEEDSRGAIGVVEEWAPAPEPDTENPLAATPRTAQWPPDPLGARRGAVEAGAASVLS 876

Query: 777  QLINDPYAVY--------------------ARRILKLDFIPH------------FKKDPD 804
             L + P                        A R  + +                     D
Sbjct: 877  ALASLPQDSEEAEEPEDDPENWASDVDVLLAEREARANARAEVILPAQLSVTQLVDLKAD 936

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---HLFH 861
              +        +         + T     + ++   +     +  P              
Sbjct: 937  PDELAARLRRPLPYPPNPLARRGTAFHAWIERRFGATRLLDLDELPGAADTGAGPETDLV 996

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
            K+  +FL      +S    I V +P + +I      L G  D +     G   + D+KTG
Sbjct: 997  KLQDAFLRSPWANRS---PIEVEVPFETSIAGT--VLRGRIDAVFADPDGGWTVIDWKTG 1051

Query: 922  DNPKKETAQKLIDPQLSLEAAA 943
              P     +  +  QL+    A
Sbjct: 1052 AEPSTAN-EDAVVMQLAAYRVA 1072


>gi|146318408|ref|YP_001198120.1| ATP-dependent nuclease, subunit B [Streptococcus suis 05ZYH33]
 gi|146320604|ref|YP_001200315.1| ATP-dependent nuclease, subunit B [Streptococcus suis 98HAH33]
 gi|253753454|ref|YP_003026595.1| ATP-dependent exonuclease subunit B [Streptococcus suis P1/7]
 gi|251764626|sp|A4W0M6|ADDB_STRS2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|251764629|sp|A4VUD1|ADDB_STRSY RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|145689214|gb|ABP89720.1| ATP-dependent nuclease, subunit B [Streptococcus suis 05ZYH33]
 gi|145691410|gb|ABP91915.1| ATP-dependent nuclease, subunit B [Streptococcus suis 98HAH33]
 gi|251819700|emb|CAR45512.1| putative ATP-dependent exonuclease subunit B [Streptococcus suis
           P1/7]
 gi|292558200|gb|ADE31201.1| putative exonuclease RexB [Streptococcus suis GZ1]
          Length = 1088

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 108/939 (11%), Positives = 247/939 (26%), Gaps = 123/939 (13%)

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
           + +  L +             L  +   ++       DL A+ +             L  
Sbjct: 97  FEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMDSPD-------KQADLVK 149

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249
                T+ L +                E   L +  K  + ++ G +        L+S +
Sbjct: 150 IFLAVTDILSKEGFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSAL 209

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 + +L              I   ++      T    +   +    L  L  + + 
Sbjct: 210 NE--RVSEIL--------------IGVYASKKAVQATYAEGNVYQANVDFLRQLSAQFQT 253

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                     +              D S         ++          + L E  N++E
Sbjct: 254 KATYIGQEPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQ--------EKIQLWEVVNQKE 305

Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426
           E   +A A+R  + +    K   L+  D +  +        ++ I         +S    
Sbjct: 306 EVEQVATAIRQHVHQGARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPL 365

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              + SL            +  L+K  L            + +  EL          D+ 
Sbjct: 366 VHFVESLERLRRYRFRAEDLLNLLKSGL----------YASISQKELDLFESYILFADMK 415

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
              +         + +      + +    D  +   L   I++ +  L        +   
Sbjct: 416 GQAAFSRAFSVNGRADYDAEVIKEKRLVYDLTVLEPLRAKIMEPLNQLFKAGPQSGTALL 475

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              ++    + +            ++     E+  K+ + L     +     K    +++
Sbjct: 476 EKFMAFLEAIDLPKNMEKMSRNLSEVEQEKEEQVWKSFTHLLENFHQIFGKEKLKMDDFL 535

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            I+   +     +        + +             +   G+ +  +PK       L+ 
Sbjct: 536 AILQAGMQASHYRTVPATVDVVNVKSYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTE 595

Query: 667 VMQS----------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRW 715
                           +L + E      A    + N     L+ +     N      S +
Sbjct: 596 EEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNSATEQLVISTPQIYNEGEDSLSPY 655

Query: 716 LQRLLVLG------------------------------GTDFFDNLKKRGQC--YLDWTR 743
           ++ L  +G                                   +  +  GQ   +    R
Sbjct: 656 IKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLETEEWEGQRAFWTVLVR 715

Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRT---------------YSFSEIKQLINDPYAVYAR 788
            L    +    + P     + ++  +                S S +    N+ Y  + R
Sbjct: 716 HLKKKLESQSIEIPTITGDIASKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVR 775

Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE--INHLMKQIIDSHFE-K 845
            +L+L         P     G   H I   ++  +   +  +     +++   ++ F   
Sbjct: 776 NVLRLREQESIH--PTAFQHGLFLHRIFERVVMDQSELDFDQKVDKAILRTRDEAEFAMF 833

Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAK----MAIE---SIGIH 897
            N           +  KI+ S         + + +I       +    +  +      +H
Sbjct: 834 YNQDADARYTE-EVLDKIARSSAT--ILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVH 890

Query: 898 LTGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
           + G  DR+D L+ +  V + DYK+   +         + PQL    AAL+     +   +
Sbjct: 891 VNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQE--LDETKDK 948

Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            V    Y+ L+        T + ++      +    K L
Sbjct: 949 PVFGAMYLHLQDPIIKLKDTKNLEQLEGAANTSLVYKGL 987


>gi|317013801|gb|ADU81237.1| hypothetical protein HPGAM_01955 [Helicobacter pylori Gambia94/24]
          Length = 778

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 63/397 (15%), Positives = 135/397 (34%), Gaps = 50/397 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVVADFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +    AS  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEVALSYIESETSK---ASNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  ++  +                        ++S S +   +
Sbjct: 494 DLHTEPIKDAYTLFETSPIKEYQEEEIKAAIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +     +  G+L H ++ E  +   +K    +   +  ++
Sbjct: 540 TCKRRFYYHYIKRFKETPKDE---SNSAVGSLIHELLKEAYE--KDKTPHALEERLIWLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    +EN+ P   +       KI  +F   E++   + I+ + +    + AI+  G+  
Sbjct: 595 E---TRENITPKERLDTLVALKKI-QAFYIKEKERFNAKIKILDLEKSFETAIQ--GVIF 648

Query: 899 TGFADRIDLLKSGFVDITDY------------KT--GDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID      + + DY            KT  G     E AQ   D Q+++ A AL
Sbjct: 649 KGRIDRIDKTADNEIVLLDYKFKSDLKLDNMSKTQRGGLSPIEIAQISTDYQMAIYARAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
           K   +      +    F+  L++   ++      +  
Sbjct: 709 KNLGYK-----EPIKAFFYDLRKGELLEEDELILQAK 740


>gi|114705059|ref|ZP_01437967.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506]
 gi|114539844|gb|EAU42964.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506]
          Length = 1211

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 112/917 (12%), Positives = 243/917 (26%), Gaps = 96/917 (10%)

Query: 93   LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL 152
                 +L      ++RL  L ++++          +     + ++  +       L + +
Sbjct: 279  AESLPDLAAAADPLERLALLKQIVM---------TQAGGRRASVATKVVTGELPDLDERV 329

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS-PVGYQ 211
            A+  + +ET E   + L ALK  +     L+ AD L+        R   L+ +       
Sbjct: 330  AEAQEYVETAE---DRLAALKLFRASRAALVIADALERDYALLKRRRGRLDFTDLIARTA 386

Query: 212  IALMRAEAEHL----MKGTKGPIIIAGSTGSIPATARLMSTVAN--------HPNGAIVL 259
              L R+EA       +      I+I  +  + P   ++M  + +        H     V 
Sbjct: 387  DLLTRSEAASWVHYKLDQGIDHILIDEAQDTSPRQWQVMRQLVDEFFVGRSTHNRTRTVF 446

Query: 260  PGLDCHIPTAIWNTITEKSTNITSS---NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
               D       +   +    ++              +++   L          +  +  V
Sbjct: 447  AVGDEKQSIYSFQGASPHMFDLERRVVKAKADEAGLKFTPVSLNQSFRTLETVLGAVDQV 506

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE------ 370
                  R  + +    P  TS  ++ + L    P I +  S V      +  +E      
Sbjct: 507  FEAPENRRGLSTGGERPTHTSARQDGEGLVEIWPTI-RAESTVEPDNWLDPMDEEPKSSP 565

Query: 371  ----AISIAIALRMSL------------DENKKKSALITADRNLARRVKLELTRFGINID 414
                A  IA  +   L             +      L+    N    +   L   GI++ 
Sbjct: 566  AYRLAQRIADQIAEWLGDPIVEKGRIRPLDPGDVMILVRKRTNFIPAMAAALRERGISVA 625

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
             +  + ++  +    L +L        D +++A L+K PL +F   E             
Sbjct: 626  GADRLTITEHIAVQDLIALGRVAANFEDDLSLAALLKSPLFEFTDDELMALALSRGPLEH 685

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
               G +          +       +     +      +   D+       + +      +
Sbjct: 686  LSAGLRKLGGEEGPGRVPDWFPDGEPAARLLEKAHHAIERLDELRNRTGFESVFTFYARI 745

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                     +     +   T   +    ++ L E     +          ++      E 
Sbjct: 746  --LGPEGGRSKLMARLGRDTADVIDAFLDLALSEDTAGVSGLDAFLSDLEAAPPEIKREM 803

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                    I        L            +      G+  SRL+ ++ +     ++   
Sbjct: 804  EGGRGEVRIMTTHASKGLEAPVVFLVDPGSAP---FHGSHGSRLMRWEEMPRLLADQAPG 860

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
                A     +  + +   ++            +         +    +     P+  + 
Sbjct: 861  FLWRAAKEVENSAIAALREIEKQRAEEEYRRLLYVGMTRAAERLVICGMAGTRGPSEEAW 920

Query: 715  WLQRLLVLGGTDFF-------------------DNLKKRGQCYLDWTRKLDYTTKQPHYK 755
              +    L                             +R        R LD +  +    
Sbjct: 921  REKVESALKPHAEEITDMAGDPVCWRIGSRRMGKPETERPDAANLAVRALDLSRLEEEVA 980

Query: 756  RPKPFPPLEA----QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
             P+P  P  A    +      S +++  N     YA  +L     P          RG +
Sbjct: 981  PPRPLTPSSAGAAFEADELESSVLEEQ-NTAETAYASPVLGTAATPSL-----GIQRGLV 1034

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
             H ++  L      +        +++ +    +                 ++        
Sbjct: 1035 VHRLLQHLPTLASEERERAAEAYVRRALPQVGDTH------RKQLLASVQRLMDDPA--Y 1086

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETA 929
              I +   +  V I   + I      + G  DR+ +     V I DYKT   P       
Sbjct: 1087 AAIFAEGSRAEVAIAGTVRIGRTNYAVNGTIDRLVVT-DRDVLIVDYKTNRPPPQTLAEV 1145

Query: 930  QKLIDPQLSLEAAALKA 946
             K    QL++  A +  
Sbjct: 1146 PKDYVRQLAIYRALVMQ 1162


>gi|328754850|gb|EGF68466.1| UvrD/REP helicase [Propionibacterium acnes HL020PA1]
          Length = 1072

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 108/1061 (10%), Positives = 265/1061 (24%), Gaps = 146/1061 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     T +A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     +S    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGISTGTHLITGARAYQLAAEVVMGLDKAPLAATHMG 160

Query: 138  LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184
                    + LA  +A        +   + +W  +                  W      
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+        +S       D     + +  +     
Sbjct: 341  QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +       H+            E     +  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +    +    L +   +
Sbjct: 567  IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
               +   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            +GV+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711
             +      +  +                                     R   +    T 
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               + + +      +   ++   GQ       + D  T     +R        A P   +
Sbjct: 800  WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S+I +L  +P A   R  L+        +       GT FH  +++ +         + 
Sbjct: 860  TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889
              + +       ++E++      +        +   L    EE   +    + V     M
Sbjct: 915  EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968

Query: 890  AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             I      + G  D +       G   + D+KT      +        QLS+   A    
Sbjct: 969  TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                ID  +V    +  +     I           A  L+ 
Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|308177921|ref|YP_003917327.1| ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745384|emb|CBT76356.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117]
          Length = 1105

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 100/888 (11%), Positives = 231/888 (26%), Gaps = 145/888 (16%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTG 237
             +   +   ++ +      L             R       A    + +   +++     
Sbjct: 225  ASRATIAELAEEYASEKKRLGVMDYGDLVAHAARIAQEVPAAALAERASHKVVLLDEFQD 284

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            +  A   L S +     G  V    D +     +   +             +        
Sbjct: 285  TSHAQMVLFSQLYG--QGHPVTAVGDPNQSIYGFRGASAGQLFRFPEVFPING------- 335

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                  + + +               +++ + + +       +    ++    +      
Sbjct: 336  ------ENRNDVAHVKHLTIAWRNTVNVLAAANSITAAAPQHQGPVSVKPLDSSAHAKPG 389

Query: 358  DVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDI 415
             V L      REEA +IA  +     +    K SA+++ +R     +   L   GI   +
Sbjct: 390  RVVLNRCATVREEAEAIAEMIAAENRKAAEPKTSAVLSRNRTQLSIMGEVLAERGIKYQL 449

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                 L +T   + L S L+ +        +  ++     + G  +       +      
Sbjct: 450  VGLSGLLSTPELTDLVSYLHVLVDPLRSDKLMRILAGARWRLGTADLMAFADWSRQLERR 509

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL- 534
                  S    D  +   + +  +     +    S +   D            + I+P  
Sbjct: 510  RAHGLQSTPAADESASSDEDVLKEAARAELNDAASLVEALDFLPKEGWTSSDGRTISPAG 569

Query: 535  -VTYKTNKNSTCGNLSIS-DWTKLTVTCLQNVCLDEHRKLPNLWFEEE------GKTLSS 586
                   ++   G   ++ D  +  +   +     +       W   +            
Sbjct: 570  YERLAALRDELAGLRLLANDDLETLIRETERAMNLDIEVAARPWISRDKARANLDAFADV 629

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            +            A  + W++       G  +  +    S + +L    S+ L +D + +
Sbjct: 630  VREYCRNAPRVELAGFLMWLEQAAEKEKGLPLPSEDADPSAVQLLTVHASKGLEWDIVAV 689

Query: 647  GGLNEGVWP-----KNTAKNPFLSRVMQSDLNLKT-----------------------AE 678
              LN+GV+P     + T+ +  L   ++ D                             +
Sbjct: 690  MTLNDGVFPGSKSDRWTSGDKALPWELRGDHKDLPQWDTDQPTLKELLEAESIFKDRVED 749

Query: 679  KYIGQAAHDFEMANGTRHLIYTRS----LRENNIPTIASRW---LQRLLVLGGTDFFDNL 731
             +I +      +A      +   S          PT  S +   L  L           +
Sbjct: 750  HHIAEERRLAYVAVTRAKSLLICSSSVWTSTRTKPTAPSEFFNCLVPLAEGENPQAEIGV 809

Query: 732  KKRGQCYLDW----TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN------- 780
                +   +        L+        + P     ++  P  YS  E+   +        
Sbjct: 810  WVEDEDAPEQNPSTLTPLEAVWPYDPLEGPVITGGVQKTPHPYSRREVIAEMAKNLEVVS 869

Query: 781  ---------------------DPYAVYARRILKLDFIPHFKKDP---------------- 803
                                       A R  +++   H +                   
Sbjct: 870  QEHEPLTSFGQQWAEEAGKLLGQREFLAGRERRIEAPEHVRASLFVELAEDPVEVLENLR 929

Query: 804  --------DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                        RGT FH  I E  +K    +  ++       +D   +           
Sbjct: 930  RPVPRRPGLAARRGTAFHAWIEEFYEKTSMLDLGDLQEPADGYLDEALD----------- 978

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
                   +  +FL  E    S ++  +V +P +  +    + + G  D +  ++ G   +
Sbjct: 979  ----LESMKEAFLSSEW---SKLQPAYVEVPLETRV--GPVAVRGRIDAVFQMEDGTWLM 1029

Query: 916  TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
             D+KTG  P  +  +  +  QL++            I   ++   FY 
Sbjct: 1030 LDWKTGRVPSGKDLKSKL-VQLAVYRLGWSR--LHGIPLEEIKAAFYY 1074


>gi|147921573|ref|YP_684610.1| putative ATP-dependent DNA helicase [uncultured methanogenic
           archaeon RC-I]
 gi|56295579|emb|CAH04821.1| ATP-dependent DNA helicase [uncultured archaeon]
 gi|110620006|emb|CAJ35284.1| putative ATP-dependent DNA helicase [uncultured methanogenic
           archaeon RC-I]
          Length = 1075

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 117/1007 (11%), Positives = 267/1007 (26%), Gaps = 192/1007 (19%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            + +   ++ A   ++ E  ++        P  +         F  D+L++   +  +  
Sbjct: 61  RLLMLTFSRDAAAHMKEEIEKVV-------PEARDATANTFHAFCLDILVAGESDTGIDE 113

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK------NLADIIDII 159
             RLL+      I   K   +   L      S+  +    +  A        L   +  I
Sbjct: 114 RYRLLDEKDGGFILC-KEAGVPPRLASHYITSIQRAKDMGLTWADYEGYLGQLEASMREI 172

Query: 160 E-TEEKKWEDLHA--------LKNEKYGMWWLLAADFLKIASKY------------WTER 198
              E+ +     A         K+++         +FL++  +Y            + + 
Sbjct: 173 CPEEDIESAAGAATVRLRTEQFKDKQAREEKKKITEFLELFEEYKGYLKFLEAWKKYEQI 232

Query: 199 LVELNASSPVGYQIALMRAEAEH---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             +             +         ++      +I+     +      L+  +A    G
Sbjct: 233 KAQKLLLDYADMIRLTIDYARARGHEVLADKFDYVIVDEFQDTNRQQYELLKILAGDGKG 292

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF-LDIKREDVKRLG 314
             V+   D +     +     ++ +        +T       +  D  L      ++   
Sbjct: 293 ITVV--GDVNQSIYGFRGAYPENIDTFKEEYRPATFDLTENYRSTDSILRTAYRLIRNNY 350

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
             +++         +                             V L++  N+ E+A  I
Sbjct: 351 QKADDARLLQAFDHREGTR-------------------------VMLLKTLNQNEQARRI 385

Query: 375 AIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
              +   L E    ++ A++    +  R ++  L +  I   +S               +
Sbjct: 386 VEEIDRLLAEGVAPEEIAVLFRSYSSLRPIEAALKQRAIPYQVSTTTGFLKRPEIRTALA 445

Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
                     ++ +   ++ P            R         L   +    I D+  L 
Sbjct: 446 ----------YLYVLASLEMP------------RHGADQLWYKLLQYRYGVSIRDVHLLS 483

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                              LSEE +     LVD I++             +      + D
Sbjct: 484 AAAKRDSIQGVLTGSLPRGLSEEGRVKIRHLVDRIME--------LRASTNKELPDLLLD 535

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
             +L+    +    +      +L   +    + + F  +  T         E+++++  +
Sbjct: 536 IYELSGLSREFTHDNSSESKTSLLNLKALHDIVTGFQDLYGTDLQGFI---EYVELLDEI 592

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK-----NPFLSRV 667
            D   + P+ EK+  + +     ++ L +  + +  L +  +P +           L+  
Sbjct: 593 GDDGEL-PRQEKAGGVVLKTCHGAKGLEYSHVFVVDLAKDKFPLSRGGREPLVPDQLNDR 651

Query: 668 MQSDLNLKTAEKYIGQ------------AAHDFEMANGTR-HLIYTRSLRENNIPTIASR 714
                +L  AE                     +      +  L               S 
Sbjct: 652 YADVFSLPEAEIEEALKKRKQDFKLKEERRLAYVAFTRAKDRLYLCYPASYGESERPPSM 711

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTR------------------------------- 743
           ++       G    D                                             
Sbjct: 712 FIAEACYNSGELHPDMELVEDAEEKAAVATRDSDLDRKKNEIKRQILSTIDSEPDLALYN 771

Query: 744 -KLDYTTKQPHYKRPKPFPPLEAQP----------------------RTYSFSEIKQLIN 780
             L             P   +  +                          S+S +K    
Sbjct: 772 LLLYQHLCGRPIAINCPQAAMAGEEAAVIRAELDAGIPRGMQFDPKEVRLSYSGLKTYEE 831

Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
            P     + +L +       +       G   H  +   +K++I+          ++ +D
Sbjct: 832 CPKKYELQYLLNIPSRTKDSEGESPLSFGNYIHKTLELAVKQQIST---------REELD 882

Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
           +  EK +L P    + +    +I   F        +    + V       ++  G   TG
Sbjct: 883 AIAEKTSLLPDFAGVDKDKAKRIFDVF--WARNKDTIRRSVGVEQFFNFTMD--GFQFTG 938

Query: 901 FADRIDLL-KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             DR+D L ++G  +I DYKTG  P  E  ++    Q+++   AL+ 
Sbjct: 939 KIDRVDQLSENGDAEIIDYKTGREPGTEDRER----QITMYMLALQR 981


>gi|313792361|gb|EFS40460.1| UvrD/REP helicase [Propionibacterium acnes HL110PA1]
 gi|313801691|gb|EFS42931.1| UvrD/REP helicase [Propionibacterium acnes HL110PA2]
 gi|314962480|gb|EFT06580.1| UvrD/REP helicase [Propionibacterium acnes HL082PA1]
 gi|315077696|gb|EFT49747.1| UvrD/REP helicase [Propionibacterium acnes HL053PA2]
 gi|327453453|gb|EGF00108.1| UvrD/REP helicase [Propionibacterium acnes HL092PA1]
          Length = 1072

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 108/1061 (10%), Positives = 265/1061 (24%), Gaps = 146/1061 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     T +A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     +S    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160

Query: 138  LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184
                    + LA  +A        +   + +W  +                  W      
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+        +S       D     + +  +     
Sbjct: 341  QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +       H+            E     +  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +    +    L +   +
Sbjct: 567  IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
               +   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            +GV+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711
             +      +  +                                     R   +    T 
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDTQAGTP 799

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               + + +      +   ++   GQ       + D  T     +R        A P   +
Sbjct: 800  WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S+I +L  +P A   R  L+        +       GT FH  +++ +         + 
Sbjct: 860  TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889
              + +       ++E++      +        +   L    EE   +    + V     M
Sbjct: 915  EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968

Query: 890  AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             I      + G  D +       G   + D+KT      +        QLS+   A    
Sbjct: 969  TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                ID  +V    +  +     I           A  L+ 
Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|294814879|ref|ZP_06773522.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
            27064]
 gi|294327478|gb|EFG09121.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
            27064]
          Length = 1264

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 73/604 (12%), Positives = 148/604 (24%), Gaps = 68/604 (11%)

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             D      L+  PL      +          E  A  GN+      +L +  L       
Sbjct: 616  LDTGTALALLTSPLGGMDAADLRRLGRALRDEERA-AGNRVPPPSDELIARALAEPERLV 674

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
             +     +           A  L   +      L    T +++       + W       
Sbjct: 675  THDRTYAFG----------AQQLGGLLRHARELLERGGTAEDALWALWDGTGWPARLERA 724

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                         +L         ++      E  +          +I  + I  +T+  
Sbjct: 725  ALRGGAAGRNADRDLDAVCALFDTAA----RAEERTGGAGALNFLEEIDAQDIAADTLSA 780

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
            +  +   + ++    S+ L +  +++ G+ EG+WP    +   L         L      
Sbjct: 781  RRSRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSP 840

Query: 681  IGQAA----HDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
                A      +  A   R  L+ T      +     SR+L  L V           +R 
Sbjct: 841  GALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLAELGV--EPKDVTGRPRRP 898

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL----INDPYAVYARRIL 791
                    +L  TT  P               R  + ++ + L       P   +     
Sbjct: 899  LAVAALVAELRATTVDPDASPALREAAARRLARLAALTDEEGLPLVPAAHPDRWWGLHEP 958

Query: 792  KL----------------------------------DFIPHFKKDPDRTDRGTLFHNIIT 817
                                                  +            G + H ++ 
Sbjct: 959  THSHAPLRDRDHPVTLSGSALDQLAGDGCSLQWFLGREVKADAPATAAQGFGNVVH-VLA 1017

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            + +          +       +      +                    FL      +  
Sbjct: 1018 DEVASGRTPADLAVLMERLDSVWDGLAFDAPWKSQQEKEHAR--AALERFLRWHVMDRGG 1075

Query: 878  IEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLID 934
                    P  + +E+    + + G  DR++    G V + D+KTG   P      +   
Sbjct: 1076 RTTAATEHPFDVTLEAGEYAVRIRGSMDRVERDAQGRVYVVDFKTGKQAPTAREVDRH-- 1133

Query: 935  PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            PQL++   A++ G+   +D    A+                   +  +A       L +L
Sbjct: 1134 PQLAVYQLAVREGALDTLDGTGTADAPDGAEASDTGPGPGEGRPESGAAPVPGGAELVHL 1193

Query: 995  IEIV 998
             +  
Sbjct: 1194 RQAA 1197



 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 87/773 (11%), Positives = 171/773 (22%), Gaps = 59/773 (7%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TLVE            A V +   +++A  ELR       G      P   +        
Sbjct: 67  TLVEAVAERVAAGADPARVLVLTFSRKAAVELRDRMALRLGG--ARGPQATTFHSFCYAL 124

Query: 89  FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
             A             +S  ++ + +  L+    +   D               +     
Sbjct: 125 VRAHQDADLFAEPLRLLSGPEQDVMVRELLTGQLDLEADGFDGHR---WPDELRACLTTR 181

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             A  +  ++            L           W  AA FL          L       
Sbjct: 182 GFADEVRAVLARSRELGLGPRSLARFAARTGRPDWRAAASFLAEYLDV----LDMQGVLD 237

Query: 207 PVG--YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                ++  L+   A          + +     + PA  RL++ +A    G  ++   D 
Sbjct: 238 YAELVHRAVLLAERAGPAPDFPYDTVFVDEYQDTDPAQVRLLTALAG--GGRTLVAFGDP 295

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +            +   +                 +  DV  L           
Sbjct: 296 DQSIYAFRGADVNGILDFPATFRHPDG--------------RPADVAVLTTSRRSGAALL 341

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
                       + +    +  ++     +    V          E  ++A  LR +  E
Sbjct: 342 GATRLLTRRMPLTRLPADKVRAHRELAATRPGGRVETYTFPTPSAELDNVADILRRAHLE 401

Query: 385 NKKKS----ALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFK 439
           +         L+ A       V+  LT  G+ ++   A +PL      + L + L AI  
Sbjct: 402 DGVPWHGMAVLVRAGARSIPAVRRALTAAGVPLETDGADVPLRHEPAVAPLLTALRAIAT 461

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY------DIMDLKSLVL 493
                     V  P            R     +     G+  +          D  ++V 
Sbjct: 462 AASTTPTGAAVPGPRHGTAPVPAPEDRTPVRSDTPPAHGDPATAAPAADSGPPDAAAVVR 521

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                      +    +  + +    A             +     +  +     + +D 
Sbjct: 522 TGTGASAAAGDLSGPVAGEAPDTPVPAPGGGPPGDIAADAVGGTSADAAAVVRTSAETDA 581

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS-------KIIETGSCIKANAIEWI 606
                             +             +               G    A+     
Sbjct: 582 AADGGPDRSGAGDGAGDGVSGPGARARAAVGRAWLDTGTALALLTSPLGGMDAADLRRLG 641

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             +         +        +        RL+  D     G  +       A+   L R
Sbjct: 642 RALRDEERAAGNRVPPPSDELIARALAEPERLVTHDRTYAFGAQQLGGLLRHARE-LLER 700

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
              ++  L       G  A     A                    A R L  +  L  T 
Sbjct: 701 GGTAEDALWALWDGTGWPARLERAALR-----------GGAAGRNADRDLDAVCALFDTA 749

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                +  G   L++  ++D           +   P   +  T   S+  +  
Sbjct: 750 ARAEERTGGAGALNFLEEIDAQDIAADTLSARRSRPDAVRLMTAHRSKGLEWR 802


>gi|332975149|gb|EGK12051.1| UvrD/REP helicase [Desmospora sp. 8437]
          Length = 1177

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 103/892 (11%), Positives = 231/892 (25%), Gaps = 87/892 (9%)

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
               ++     + ++  E N       Q   +    EH       +     +++     + 
Sbjct: 319  LQVMEQVDARYKKKKEERNRLDFDELQFRAVTLLREHPRICRQVRSRIRYLMVDEYQDTN 378

Query: 240  PATARLMSTVANHPNGAIV----LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
             A  +L+  +   P+G  +        D       +          T      S   + +
Sbjct: 379  EAQKQLVDLLRPGPDGERIPGKLFVVGDPKQSIYRFRGAEVAVFGRTRDEILQSGGKEVA 438

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
            L             +  L +                 P + +  +            +  
Sbjct: 439  LVDNFRSDGALVGFINGLFD-----------KLMKGAPGEANHYQPARASRPAGDGPRVE 487

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINI 413
            F  V    AD  + EA +IA  +   ++E       AL+       + V+  L R GI  
Sbjct: 488  FLAVDAAGADPRKVEAAAIARRICELVEEGIPYGGIALLFQAMTHVKEVEEALIREGIPC 547

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR----AKN 469
             +  G           L +++  +    D +A+  +++ P                    
Sbjct: 548  HVVGGSGFFAQQEIFDLLNMMRILEDPADTLAMVGVLRSPFCGVSDETLLRLAQGEGWVL 607

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
              E    R      +   LK  +      ++    VP  +      ++   + +     +
Sbjct: 608  TREEWVEREGLPPEERRKLKQFLHQFERYRRIKGRVPAAELLSDLLEQSGYIHVTWSTPR 667

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                                +   T    + L+ V      +        E +  +S+  
Sbjct: 668  GKQARANLDKFLQLLRQWKDVD--TTSLRSILEKVERLTEMEDRETEAPVEAEDGNSVRL 725

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL---GTLESRLLNFDTLIL 646
              +     ++   +   D+  + +          ++  +  L      +     +  ++ 
Sbjct: 726  MSVHQSKGLEFPVVFVPDLARKPLIDVPDFKLDREAGLVVRLVDESGEKRDPFRWQRVME 785

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
                              +R  Q  +     E++ G    +  ++  T        L  +
Sbjct: 786  RERELSREESVRLFYVATTRAEQRLILSGVPEEHKGLQKGEELLSANTWSKWLDGVLGFH 845

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP--------- 757
             I     R +                            L     +     P         
Sbjct: 846  RIDWE--RGIWNFADGNSGVAVRKCGDSDFKERSKLSPLSDGLPESSLPSPPESSPFLEK 903

Query: 758  --KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK-------------D 802
               P    E      S +++  L   P   Y  R+  +  +   +               
Sbjct: 904  MLAPRGFTERDRLEVSVTDLVTLTGCPRRYYFERVAGMPAMEEGEPFSPASSGGEAEGPV 963

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
             D   +G + H ++ +        +                E+  +P  +          
Sbjct: 964  LDPRIKGQIVHRLLEDC------PDPRSAEEDWTARCFEVLEEWRVPGELQSQALEEIRP 1017

Query: 863  ISHSFLEH----EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
            +  S+L      E++  + ++            + + +   G  DRI     G  ++ DY
Sbjct: 1018 LLESYLNSRFYLEQERLAGLK---NERRFIRRSDGLEVE--GVLDRIHCTPDGVWELVDY 1072

Query: 919  KTG--DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
            KT      + E   +   PQL L A A +          +        LK    +     
Sbjct: 1073 KTNDISEERVEEVAQEYLPQLQLYALAAREEW-----GIQAGRAILFFLKPGRCV----- 1122

Query: 977  DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
              +  +  E  EK+ + L E   LLQ G++     LR   +     ++ ++ 
Sbjct: 1123 --EYRTDREWMEKAEETLRESARLLQQGQEMEDFPLRPGRR-CSYCDFRNIC 1171


>gi|189424132|ref|YP_001951309.1| UvrD/REP helicase [Geobacter lovleyi SZ]
 gi|189420391|gb|ACD94789.1| UvrD/REP helicase [Geobacter lovleyi SZ]
          Length = 1048

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 95/786 (12%), Positives = 213/786 (27%), Gaps = 77/786 (9%)

Query: 171 ALKNEKYGMWWLLA--ADFLKIASKYWTERLVELNASSPVG---YQIALMRAEAEHLMK- 224
            L   K                +   + + L E           +  A  +  A+ L   
Sbjct: 206 DLNERKLREELRKLEQLKAAARSFDDYQQLLKERGRYDFADMILWCSAAFKQNADLLATY 265

Query: 225 -GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                 +++     +  +   L+  +A++ +   +    D       +   + ++     
Sbjct: 266 QERYLYLLVDEFQDTSGSQFELLMQLADYWDAPNLFVVGDDDQSIFRFQGASVENIRRFV 325

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                     Y  +     L       + + + +  + GR+    +         M    
Sbjct: 326 ER--------YRPSLTTVTLTDNHRSSQLILDGAGALIGRNQ--ERLSDEKQLIAMNPEV 375

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--KKKSALITADRNLARR 401
               + P          L        E ++IA  +   LD     ++ A+I  + + +  
Sbjct: 376 AALPEPP---------QLEGYATLAHETVAIANRIGALLDAGVLPEQIAVIYRNHSQSEE 426

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           +   LT  G+ +       +        L ++L  +    +       +   +    +  
Sbjct: 427 IIRYLTARGVAVQTRRRADILQEPLILKLMNVLRYLATELERPHSGERLLFEILHEPWFG 486

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                       +A +  +                              +  +     + 
Sbjct: 487 VPPLALARLSVEIARQRTEKRPSYW--------------REQLPLRGMDKGQQALFPASD 532

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            L  H+ Q    +     +  +      +           Q +   E      L      
Sbjct: 533 DL--HLRQAGETIEELLRDAATMTLQELLHHVITRLGILAQALSAHERVWHLEL------ 584

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE---TVKPKIEKSSTLFILGTLESRL 638
             L++LF  + E  +    +  E + ++  +        V+      + +  L    S+ 
Sbjct: 585 --LNTLFDFVREETAKQPLSLPELLAMLADMQRQGISLAVEKLSYTGAGVNFLTAHGSKG 642

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L FD + + G   GVW  + ++N   S           +E+   +      M    + L+
Sbjct: 643 LQFDHVFMLGCTRGVW-DSASRNRTYSMPPTIWSGPAGSEEEESRRLFYVAMTRARKQLV 701

Query: 699 YTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY-TTKQPHYKR 756
            +   R+N       SR++  L   GG     ++    +        L     + P    
Sbjct: 702 ISWPERDNKEKELEKSRFVAELAESGGGSIRQHVLSDDELLAFGNAVLQALPARLPAELI 761

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
              F     Q  + S + +   +  P + Y   +L++               G+  H+ +
Sbjct: 762 DDAFVDSLLQKYSLSVTHLNSYLRCPLSFYFNTLLRVPAPMS-----SALTFGSAVHHAL 816

Query: 817 TELIKKRINKN------TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
            +L +K                   +  +  H E          +       I   F   
Sbjct: 817 EQLFRKMKADPAGRFPTADVFVEDFRWFMRRHEEGFTPAEFRRRLEYG--ETILPGF--- 871

Query: 871 EEKIQSSIEK-IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
                +  ++   V  P +  I   GI L G  D ++   +  V + DYKTG+       
Sbjct: 872 YAAHHAGWKRDALVEYPFR-NILMDGIPLNGKLDMLEFSGN-HVTVVDYKTGNPQNARKK 929

Query: 930 QKLIDP 935
               DP
Sbjct: 930 LNPPDP 935


>gi|223932474|ref|ZP_03624476.1| ATP-dependent nuclease subunit B [Streptococcus suis 89/1591]
 gi|302023672|ref|ZP_07248883.1| ATP-dependent helicase/deoxyribonuclease subunit B [Streptococcus
           suis 05HAS68]
 gi|330832697|ref|YP_004401522.1| ATP-dependent exonuclease subunit B [Streptococcus suis ST3]
 gi|223898928|gb|EEF65287.1| ATP-dependent nuclease subunit B [Streptococcus suis 89/1591]
 gi|329306920|gb|AEB81336.1| ATP-dependent exonuclease subunit B [Streptococcus suis ST3]
          Length = 1088

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 111/938 (11%), Positives = 244/938 (26%), Gaps = 121/938 (12%)

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
           + +  L +             L  +   ++       DL A+ +             L  
Sbjct: 97  FEDGDLKVYGRLQRDFGFINQLVALYKELQRANMSILDLEAMDSPD-------KQADLVK 149

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249
                T+ L + +              E   L +  K  + ++ G +        L+S +
Sbjct: 150 IFLAVTDILSKESFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSAL 209

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 + +L              I   ++           +   +    L  L  + + 
Sbjct: 210 NE--RVSEIL--------------IGVYASKKAVQVIYAEGNVYQANVDFLRQLSAQFQT 253

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                     +              D S         ++          + L E  N++E
Sbjct: 254 KATYIGQEPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQ--------EKIQLWEVVNQKE 305

Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426
           E   +A A+R  + +    K   L+  D +  +        ++ I         +S    
Sbjct: 306 EVEQVATAIRQHIHQGARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPL 365

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              + SL            +  L+K  L            + +  EL          D+ 
Sbjct: 366 VHFVESLERLRRYRFRAEDLLNLLKSGL----------YASISQKELDLFESYILFADMK 415

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
              +         + +      + +    D  +   L   I++ +  L        +T  
Sbjct: 416 GQAAFSRAFSVNGRADYDAEVVKEKRLVYDLAVLEPLRAKIMEPLNQLFKAGPQSGATLL 475

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              ++    +              ++     E+  K+ + L     +     K    +++
Sbjct: 476 EKFMAFLEAIEFPKNMEKMSRNLSEVEQEKEEQVWKSFTHLLENFHQIFGKEKLKMDDFL 535

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            I+   +     +        + +             +   G+ +  +PK       L+ 
Sbjct: 536 AILQAGMQASHYRTVPATVDVVNVKSYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTE 595

Query: 667 VMQS----------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRW 715
                           +L + E      A    + N     L+ +     N      S +
Sbjct: 596 EEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNAATEQLVISTPQIYNEGEDSLSPY 655

Query: 716 ------------------------------LQRLLVLGGTDFFDNLKKRGQC--YLDWTR 743
                                         L   L+       DN +  GQ   +    R
Sbjct: 656 VKILKEMGLSSEERGRIKSLSPQDIGHYKSLLSRLIESERPSLDNEEWEGQRAFWTVLVR 715

Query: 744 KLDYTTKQPHYKRP---------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
            L    +    + P                     E +P   S S +    N+ Y  + R
Sbjct: 716 HLKKKLESQGIEIPTITGDITSKQLAADTLAALYPEDKPLNLSASSLTNFYNNQYLYFVR 775

Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE--INHLMKQIIDSHFEKE 846
            +L+L         P     G   H I   ++  +   +  +     +++   ++ F   
Sbjct: 776 NVLRLREQESIH--PTAFQHGLFLHRIFERVVMDQSELDFDQKVDKAILRTRDEAEFAMF 833

Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAK----MAIE---SIGIHL 898
                       +  KI+ S         + + +I       +    +  +      +H+
Sbjct: 834 YNQDADARYTEEVLDKIARSSAT--ILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVHV 891

Query: 899 TGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
            G  DR+D L+ +  V + DYK+   +         + PQL    AAL+     +   + 
Sbjct: 892 NGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQE--LDETKDKP 949

Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           V    Y+ L+        T + ++      +    K L
Sbjct: 950 VFGAMYLHLQDPIIKLKDTKNLEQLEGAANTSLVYKGL 987


>gi|315109404|gb|EFT81380.1| UvrD/REP helicase [Propionibacterium acnes HL030PA2]
          Length = 1072

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 107/1061 (10%), Positives = 264/1061 (24%), Gaps = 146/1061 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     T +A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     +S    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160

Query: 138  LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184
                    + LA  +A        +   + +W  +                  W      
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+        +S       D     + +  +     
Sbjct: 341  QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +       H+            E     +  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +    +    L +   +
Sbjct: 567  IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
               +   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            + V+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QSVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711
             +      +  +                                     R   +    T 
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               + + +      +   ++   GQ       + D  T     +R        A P   +
Sbjct: 800  WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S+I +L  +P A   R  L+        +       GT FH  +++ +         + 
Sbjct: 860  TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889
              + +       ++E++      +        +   L    EE   +    + V     M
Sbjct: 915  EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968

Query: 890  AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             I      + G  D +       G   + D+KT      +        QLS+   A    
Sbjct: 969  TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                ID  +V    +  +     I           A  L+ 
Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|224417727|ref|ZP_03655733.1| hypothetical protein HcanM9_00476 [Helicobacter canadensis MIT
           98-5491]
 gi|253827072|ref|ZP_04869957.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141269|ref|ZP_07803462.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253510478|gb|EES89137.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130300|gb|EFR47917.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 743

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 65/407 (15%), Positives = 132/407 (32%), Gaps = 37/407 (9%)

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
              S+++  +      Q +   +     +   ++        FS  ++    ++     +
Sbjct: 303 RLQSLAESAQSFEEFWQFIEEMQENTWEDKEVKKIILQRLEYFSFGLKFLDSLQTRDKIY 362

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
              +  ++  ET+         + ++G LE+R + F  +IL   N+   PK + K+ FL+
Sbjct: 363 AFFM--MLKKETIDDIG--GGRISVIGILETRGIAFSYVILPEFNQNNVPKVSQKDIFLN 418

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
            +++  + L T +       + +              +  +N     SR+L    +    
Sbjct: 419 SIIRQKVGLPTRKDRENLQKYYYAKLFAHSKEA--CVMFVSNEEEEPSRFLLEEKIFKNA 476

Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
            F    +K G+ +L+    L Y  K+                   S ++++ L+      
Sbjct: 477 SFAKASRKYGEYFLN-GELLSYKEKEIIAP---------LDFGVMSATKLECLLTCKRKY 526

Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
           Y R +L       F         GT  H  + +            I+   +++    +E 
Sbjct: 527 YYRYVLGYKEQMDFN-------VGTQIHKALQKAYVNF------AIHRDFEKLQQEAYEN 573

Query: 846 ENLPPHIDI-IWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAIESIGIHLTGFAD 903
             +  +        +  +    F   E K        I       + +  I     G  D
Sbjct: 574 LQVYENKREYFELEIAKRYLQKFFYAERKHLEDGWIPIEFEKEFSLQVCEIPF--RGRID 631

Query: 904 RIDLLKSGFVDITDYKTG---DNPKKETAQKLIDPQLSLEAAALKAG 947
           RID  K   V + DYK         + +     D QL L A AL+  
Sbjct: 632 RIDK-KGESVLVLDYKYKKNLKVSTQRSIDTSKDFQLVLYALALQES 677


>gi|120402801|ref|YP_952630.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
 gi|119955619|gb|ABM12624.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
          Length = 1086

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 107/959 (11%), Positives = 242/959 (25%), Gaps = 128/959 (13%)

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
               F  +LL  + L  PV    RLL    L  +    +      L  E   +        
Sbjct: 115  YHAFAGNLLREFGLLLPVEPDTRLLGETELWQLAFRVVCAHPAALDTEKSPASITDM--V 172

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL-------AADFLK--------- 189
            + LA  L++ +           +L  L        +             L          
Sbjct: 173  LRLAGQLSEHLVDTAALRDTHVELERLVLNLPAGRYQRDRGPSQWLLRMLATQTERTMLV 232

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATAR 244
                    R+ E           +  R  A+       ++     +++     +  A   
Sbjct: 233  PLVDALHRRMREERVMDFGMQMASAARLAAQFPQVGAQLRQRYRVVLLDEYQDTGHAQRV 292

Query: 245  LMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             +S++      +G  +    D       W   +  +    +++   S        +L   
Sbjct: 293  ALSSLFGGGADDGLALTAVGDPIQSIYGWRGASATNLPRFTTDFPLSDGTPAPTLELRTS 352

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                 E +     VS +   RS+ +      P          L + +   +         
Sbjct: 353  WRNPPEVLHLANEVSVDARRRSVAVRALQPRPGAEPGSVRCALLSDVERERDWV------ 406

Query: 363  EADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAGIP 420
                    A  IA      ++ +     +A++      A  +   LTR G+ +++     
Sbjct: 407  --------ADQIARRWHAGIEADGAAPTAAVLVRRNADAAPMADALTRRGVAVEVVGLAG 458

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L      + + ++L          A   ++  P  + G  +      +    +      +
Sbjct: 459  LLAVPEVADVVAMLRLAADPTAGAAAVRVLTGPRWRLGARDVAALWRRAVALV------E 512

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                     +          +        +                 +  +   +T    
Sbjct: 513  PGASSDGESATAGIVAQLGPDADAACLADAICDPGPATAYSEAGHARIVALGRELTGLRA 572

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
               +     +++  ++    +                 E       + +     G    +
Sbjct: 573  HLQSPLPDLLAEVRRVLG--IDTEVRAAQPVSAGWSGTEHLDAFGDVVADFAARGGATVS 630

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
              + ++DI  ++ +G         +  + IL    ++ L +  + +  L+  V+P   + 
Sbjct: 631  ALLGYLDIAEQVENGLAPAEVTVSADRVQILTVHAAKGLEWQIVAVPHLSGRVFPSTASP 690

Query: 661  NPFLSRVMQSDLNL------------------------------------KTAEKYIGQA 684
              +L+        L                                        +   + 
Sbjct: 691  RTWLTDAADLPPLLRGDCATVSEHGVPVLDTSDVSDRKGLSDKIYDHKRSLEQRRTDEER 750

Query: 685  AHDFEMANGTRHLIYT---RSLRENNIPTIASRWLQRLLVL-----------GGTDFFDN 730
               +       H +           + P   S +L  L  +           G  D + +
Sbjct: 751  RLLYVAITRAEHTLLVSGHHWGATESKPRGPSTFLCELKDVIDASVQSGSPCGAVDVWAD 810

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE---------IKQLIND 781
                G+      R ++    +      +      A+  T + S          +     D
Sbjct: 811  APADGEPNPLRDRVVEAVWPEDPLAGRRAHTDHGARLVTTAMSTAGGAGPQPDVHGWTAD 870

Query: 782  PYAVYARRILKL-DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK---- 836
              A+ A R L     +P        +    L  +      + +           +     
Sbjct: 871  VDALLAERELAAQRPVPPLPLQLSVSAMVELGRDPEAVAQRLQRRLPRRPDAQALLGTAF 930

Query: 837  -QIIDSHFEKENLPP--------HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
             + +  +F+ E L            D   R    ++  +F       +     I V +P 
Sbjct: 931  HEWVQRYFQAEKLFDLDDLPGAVDADRQDRGELEELQAAFALSPWAAR---TPIDVEVPF 987

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             M I      + G  D +     G V + D+KTG+ P  E   +    QL++   A   
Sbjct: 988  DMMIAGR--VVRGRIDAVFADGDG-VMVVDWKTGEPPATEEELQHNAVQLAVYRLAWAR 1043


>gi|218506213|ref|ZP_03504091.1| hypothetical protein RetlB5_00732 [Rhizobium etli Brasil 5]
          Length = 221

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 118/221 (53%), Positives = 149/221 (67%)

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
           +  L  G  VKP+      LFI GTLE+RL + DTLILGGLNEG WP  +A NPF+ R+M
Sbjct: 1   MAALAAGHAVKPRALSHPRLFIFGTLEARLQSVDTLILGGLNEGSWPGQSANNPFIPRMM 60

Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
           ++++ L+  E+ IGQ AHDFEMANGTRHLIY+R+LR+ + PT+ASRWLQRLL LGG  F 
Sbjct: 61  KTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGSTPTVASRWLQRLLALGGEAFE 120

Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
             LK RG  +L W   +D    Q   +RP P PPL  QP++YSFSE+ +L  DPY +YAR
Sbjct: 121 AELKGRGTRFLQWAGLIDRGETQAPAQRPSPKPPLALQPQSYSFSEVGRLRRDPYTIYAR 180

Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
           RIL+LD I  F +DP   +RGTL+H II   I+      TP
Sbjct: 181 RILRLDPIDAFNRDPGAAERGTLYHKIIDRFIRAAHVAGTP 221


>gi|50842799|ref|YP_056026.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
            KPA171202]
 gi|289425489|ref|ZP_06427266.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|295130853|ref|YP_003581516.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|50840401|gb|AAT83068.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
            KPA171202]
 gi|289154467|gb|EFD03155.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|291376029|gb|ADD99883.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|313764135|gb|EFS35499.1| UvrD/REP helicase [Propionibacterium acnes HL013PA1]
 gi|313819377|gb|EFS57091.1| UvrD/REP helicase [Propionibacterium acnes HL046PA2]
 gi|313820642|gb|EFS58356.1| UvrD/REP helicase [Propionibacterium acnes HL036PA1]
 gi|313822553|gb|EFS60267.1| UvrD/REP helicase [Propionibacterium acnes HL036PA2]
 gi|313827479|gb|EFS65193.1| UvrD/REP helicase [Propionibacterium acnes HL063PA2]
 gi|313830016|gb|EFS67730.1| UvrD/REP helicase [Propionibacterium acnes HL007PA1]
 gi|313832980|gb|EFS70694.1| UvrD/REP helicase [Propionibacterium acnes HL056PA1]
 gi|313838405|gb|EFS76119.1| UvrD/REP helicase [Propionibacterium acnes HL086PA1]
 gi|314914865|gb|EFS78696.1| UvrD/REP helicase [Propionibacterium acnes HL005PA4]
 gi|314918020|gb|EFS81851.1| UvrD/REP helicase [Propionibacterium acnes HL050PA1]
 gi|314920396|gb|EFS84227.1| UvrD/REP helicase [Propionibacterium acnes HL050PA3]
 gi|314924885|gb|EFS88716.1| UvrD/REP helicase [Propionibacterium acnes HL036PA3]
 gi|314929976|gb|EFS93807.1| UvrD/REP helicase [Propionibacterium acnes HL067PA1]
 gi|314956488|gb|EFT00776.1| UvrD/REP helicase [Propionibacterium acnes HL027PA1]
 gi|314957332|gb|EFT01435.1| UvrD/REP helicase [Propionibacterium acnes HL002PA1]
 gi|314960467|gb|EFT04569.1| UvrD/REP helicase [Propionibacterium acnes HL002PA2]
 gi|314972837|gb|EFT16934.1| UvrD/REP helicase [Propionibacterium acnes HL053PA1]
 gi|314975741|gb|EFT19836.1| UvrD/REP helicase [Propionibacterium acnes HL045PA1]
 gi|314983661|gb|EFT27753.1| UvrD/REP helicase [Propionibacterium acnes HL005PA1]
 gi|314986296|gb|EFT30388.1| UvrD/REP helicase [Propionibacterium acnes HL005PA2]
 gi|314989617|gb|EFT33708.1| UvrD/REP helicase [Propionibacterium acnes HL005PA3]
 gi|315080858|gb|EFT52834.1| UvrD/REP helicase [Propionibacterium acnes HL078PA1]
 gi|315084654|gb|EFT56630.1| UvrD/REP helicase [Propionibacterium acnes HL027PA2]
 gi|315085339|gb|EFT57315.1| UvrD/REP helicase [Propionibacterium acnes HL002PA3]
 gi|315095786|gb|EFT67762.1| UvrD/REP helicase [Propionibacterium acnes HL038PA1]
 gi|315101553|gb|EFT73529.1| UvrD/REP helicase [Propionibacterium acnes HL046PA1]
 gi|315105905|gb|EFT77881.1| UvrD/REP helicase [Propionibacterium acnes HL030PA1]
 gi|327329833|gb|EGE71588.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
            HL096PA2]
 gi|327442647|gb|EGE89301.1| UvrD/REP helicase [Propionibacterium acnes HL043PA1]
 gi|327443715|gb|EGE90369.1| UvrD/REP helicase [Propionibacterium acnes HL043PA2]
 gi|327452206|gb|EGE98860.1| UvrD/REP helicase [Propionibacterium acnes HL087PA3]
 gi|327452695|gb|EGE99349.1| UvrD/REP helicase [Propionibacterium acnes HL083PA2]
 gi|328752851|gb|EGF66467.1| UvrD/REP helicase [Propionibacterium acnes HL025PA2]
 gi|328753882|gb|EGF67498.1| UvrD/REP helicase [Propionibacterium acnes HL087PA1]
 gi|328761486|gb|EGF75010.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
            HL099PA1]
 gi|332675731|gb|AEE72547.1| DNA helicase II [Propionibacterium acnes 266]
          Length = 1072

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 108/1061 (10%), Positives = 265/1061 (24%), Gaps = 146/1061 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     T +A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     +S    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160

Query: 138  LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184
                    + LA  +A        +   + +W  +                  W      
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+        +S       D     + +  +     
Sbjct: 341  QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +       H+            E     +  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +    +    L +   +
Sbjct: 567  IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
               +   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            +GV+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711
             +      +  +                                     R   +    T 
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               + + +      +   ++   GQ       + D  T     +R        A P   +
Sbjct: 800  WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S+I +L  +P A   R  L+        +       GT FH  +++ +         + 
Sbjct: 860  TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889
              + +       ++E++      +        +   L    EE   +    + V     M
Sbjct: 915  EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968

Query: 890  AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             I      + G  D +       G   + D+KT      +        QLS+   A    
Sbjct: 969  TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                ID  +V    +  +     I           A  L+ 
Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|219851287|ref|YP_002465719.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
 gi|219545546|gb|ACL15996.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
          Length = 1019

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 115/1070 (10%), Positives = 269/1070 (25%), Gaps = 190/1070 (17%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
             +     +++A  E+         K+  +   I +      E    D +LS  LN     
Sbjct: 47   EILALTFSEKAAAEMNDRIE---MKRPNLDLEIHTFHSFCLEVLQ-DNMLSSGLNVSGGV 102

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA--DIIDIIETEE 163
            I R  +L   +    +        L   +   +             L   D +D   T++
Sbjct: 103  ISRTSQLVWGLQ-HIDIFDFEHIKLGNNAADVIEAVIDGISAFRDELIAPDELDDYLTQK 161

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP-----VGYQIALMRAE 218
                   +++ E+    +LL    L    + + +   E N             +      
Sbjct: 162  ------QSVQVEEAEQEYLLQLGDLLKVYRAYEQYKRERNLIDFDDMIHGAVTLFRSDPA 215

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                 +     I++     +  A  +L+  +A    G  +    D       +      +
Sbjct: 216  LRSSYRSRFRYILVDEFQDTNYAQLQLIKEIA----GENLCVVGDDDQTIYRFRGAYLTN 271

Query: 279  TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       T                    + L + +    G   V+S +      + 
Sbjct: 272  IRDFKQWAATHT--------------------ETLLDQNYRNSG--AVLSLALQVMAGAP 309

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK------------ 386
             R    L  +  + +     V +    N+  EA  +A  +   +                
Sbjct: 310  GRREKALFTEKGDGEP----VTVAACGNDAGEAEYVAAEIEKLVGTPYHSRQDGGDRPLE 365

Query: 387  -KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
             +   ++   +   ++ +  L R  I  +  A +          + + L  I        
Sbjct: 366  YRDFTVLCRTKADGKKFQAALQRHAIPCEYQANVDFMQLPVVRDMVAYLRIIDNP----- 420

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
                                     L              +    +     A  K     
Sbjct: 421  -------------------------LMAAVPLNRVMKICSIPETVVQKINAAAIKRGDDD 455

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                    ++   +     + + + +  L  +   K       ++ +     +     + 
Sbjct: 456  DDGVYETMQDAASIVPDHAEPVGEVVRMLAPFIEQKERY----TLPELVHAVMMQASGLY 511

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                    ++           +      T        +++++++      E V+ + E  
Sbjct: 512  RSALTDTADMVRLYLATFHEIVLEFDRTTPEATIPGLLQYLELLGA-FPVEVVREQKEAG 570

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF-----LSRVMQSDLNLKTAEKY 680
              + IL   +S+   F  + +  L    +P   +   F     L+R +++  + K     
Sbjct: 571  DAVQILTAHKSKGKEFPVVFVADLAREKFPLRYSPKRFRVPGDLARGLRTGDDEKALFVQ 630

Query: 681  IGQAAHDFEMANGTRHL------------------------------IYTRSLRENNIPT 710
              +      M      L                              + T        P 
Sbjct: 631  EERRLLYVAMTRAEERLYLTYAKWYGDNKRERKPSPFLEELNFRENPLITVVEPPACAPA 690

Query: 711  IAS------------------------RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
            +                          R    +  L   +      ++G    D    L 
Sbjct: 691  LPVTAGDPVEDLRTSLQEEVVRAVSEMRISTAIQTLVTLEGVREYAEQGTDDFDRDAFLA 750

Query: 747  YTTKQPHYKRP------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                +             P   L      +S S +    + P       + ++      +
Sbjct: 751  KAGSRVGADTRITTLLDPPHQSLIPPNYRFSASALSTYQDCPLQFKFANLYRVPLPRQPQ 810

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL- 859
                    G+  H++I  L +      +  +      +++ ++  E           H  
Sbjct: 811  -----LVFGSTLHSVIEHLTR--NPDPSQSLRDQGLALLEEYWSPEPYESKTQESEAHDS 863

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
               +  ++L  +    +    I V      +       + GF DR++    G   + D+K
Sbjct: 864  ASALLDTYLAWQA--GNPNTVIGVEKEFTFSFAGHS--IHGFIDRLEQTPDGNYVVIDFK 919

Query: 920  TGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
            +G  P            QL+L + A++     Q+   K A LFY++  ++          
Sbjct: 920  SGKKPDSLTKKAVGEHIQLNLYSMAVQQ--MYQVLPEK-AELFYLKDGKRVSYLPT---- 972

Query: 979  KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                 +E  +     L  ++  +   E P     +   +      Y  L 
Sbjct: 973  -----EETIQVFTGTLSTLIGGITREEFP----PKSDNQRCQWCAYRPLC 1013


>gi|313891346|ref|ZP_07824962.1| putative ATP-dependent nuclease subunit B [Dialister microaerophilus
            UPII 345-E]
 gi|313120121|gb|EFR43297.1| putative ATP-dependent nuclease subunit B [Dialister microaerophilus
            UPII 345-E]
          Length = 1138

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 116/970 (11%), Positives = 253/970 (26%), Gaps = 144/970 (14%)

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
              I      L   +     ++ LS+    ++     K+L DI     +     E L    
Sbjct: 83   DAISKLGQDLVLSLILSEEKNNLSVLSQMSSQPKFIKSLKDIFHQFNSSLITEEMLENAA 142

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
             ++           L +  K + E L   N  S  G    L+  E        K  I I 
Sbjct: 143  KKEKDSHLGKKLGDLHLLFKKYHEYLT--NRFSYNGEIFDLLATEIYKSDSIKKSAIWID 200

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
            G  G      +++S +  +     +                             + +  Q
Sbjct: 201  GYHGFTLQEMKIISALVKNAKKVTITL--------------------------PFESAEQ 234

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                 L          +      S+     ++   +S                      +
Sbjct: 235  AMQNPLFMKPSETWRILSENEKTSDATILTTLHRFQSSRIRSLVKHGFETTPYECREK-E 293

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLA-RRVKLELTRF 409
            +    +    A +   E   IA  +   + +     +   ++  +  L    ++    ++
Sbjct: 294  ETDGGIYPSSAADRSVEIDFIARKILTLVRDKKLRYRDITVLLRNPELYTDLIERIFKKY 353

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEK 462
             + + I+    ++       +T LL  +               +  ++K  L K   PEK
Sbjct: 354  ELPVFINKKDTMNNHPLIVSVTGLLEFLTAQANRKNSGYSRHILFPILKTGLLKNFPPEK 413

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                  N LE   ++     +              T K+  +  +  S + + + E A  
Sbjct: 414  -----VNKLENYIIKNGIRFFQWDK-----EWNYRTVKDIDNPENELSEIEKSENEEANN 463

Query: 523  LVDHILQCITPLVTYK-TNKNSTCGNLSISDWT--KLTVTCLQNVCLDEHRKLPNLWFEE 579
                +L+ +  L     TN +       + +W   +     L     +E  K       +
Sbjct: 464  CRKKLLETLGNLEKEWNTNTSVKERCRILYEWLVSQNIPQILAERDKNEFEKTRKKPHIQ 523

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
              K   SL  +++      +     +++I+   +   +     +    +          +
Sbjct: 524  AWKKFISLLDELVNIAGEDRLPEEYFMNILKSGLFNLSFATIPDTLDHITATSISRGYHM 583

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN----LKTAEKYI----GQAAHDFEMA 691
                + + G+  G +PK+     F++   +  L     L     ++     +  + +   
Sbjct: 584  ESTAVFIPGMANGEFPKDIENTNFITEAERKHLAKENTLTLGNDFVFNIYEEQFYTYLAL 643

Query: 692  NGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG--------------Q 736
               +  +  +    ++    +   ++ + ++       + +  R               Q
Sbjct: 644  TRAKKYMYISYPKTDSENKPLEPSFIYKKIISLNYAHKEEIADRPTYDTKDMTFFSNPKQ 703

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY-------------------------- 770
                    L     +                  Y                          
Sbjct: 704  AITLLPEILRQGLPKKDSFWTYLKNWATQSHNEYAELFYDQQKSFKYNSTASTLSQDIVN 763

Query: 771  -----------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                       S S++++  + PY  +  R LKL             D G   H+ +   
Sbjct: 764  KLFKPYGKFYGSISQLEEYRSCPYKYFLNRGLKLS--DRQDGRIQNIDFGNYLHSGLKRF 821

Query: 820  ----------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI-----S 864
                       K   +      ++ +  II        L       + H    +      
Sbjct: 822  GNLLSSMNKTWKDLSDDEIDAFSNQISSIITPLVAHGTLTSDATNAYTHRLLNMTFKKSI 881

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIG---IHLTGFADRID----LLKSGFVDITD 917
              F        S  +   +    K+ I++       L G  DRID          + + D
Sbjct: 882  KQFKNW--SENSDFKTTDLEREFKINIKADDKDTFTLRGKIDRIDSYTTETSQCALAVCD 939

Query: 918  YKTG-DNPKKETAQKLIDPQLSLEAA-ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
            YKTG  +   ++    I  QL       +K      I       L YI L    +     
Sbjct: 940  YKTGIQSIDLQSIISGIKLQLVTYMLAMIKENPEKNI---IPTALMYIYLSNDAESFKSA 996

Query: 976  NDKKKYSADE 985
                  + +E
Sbjct: 997  PPDGIPAKEE 1006


>gi|313809680|gb|EFS47414.1| UvrD/REP helicase [Propionibacterium acnes HL083PA1]
          Length = 1072

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 107/1061 (10%), Positives = 265/1061 (24%), Gaps = 146/1061 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     T +A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     +S    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160

Query: 138  LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184
                    + LA  +A        +   + +W  +                  W      
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+        +S       D     + +  +     
Sbjct: 341  QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +       H+            E     +  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +    +    L +   +
Sbjct: 567  IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
               +   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            +GV+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711
             +      +  +                                     R   +    T 
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               + + +      +   ++   GQ       + D  T     +R        A P   +
Sbjct: 800  WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S+I +L  +P A   +  L+        +       GT FH  +++ +         + 
Sbjct: 860  TSQIVRLHANPQAF--QDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889
              + +       ++E++      +        +   L    EE   +    + V     M
Sbjct: 915  EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968

Query: 890  AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             I      + G  D +       G   + D+KT      +        QLS+   A    
Sbjct: 969  TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                ID  +V    +  +     I           A  L+ 
Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|332283341|ref|YP_004415252.1| hypothetical protein PT7_0088 [Pusillimonas sp. T7-7]
 gi|330427294|gb|AEC18628.1| hypothetical protein PT7_0088 [Pusillimonas sp. T7-7]
          Length = 884

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 103/914 (11%), Positives = 231/914 (25%), Gaps = 88/914 (9%)

Query: 164  KKWEDLHALKNEKYG------MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217
               E+L  L  E                  +  +       +   +      +       
Sbjct: 8    ITLEELARLDAENVLVLTVNNRHARRVLAEMSASLTGTRSVMAVPDIIPLSAWLRQAADQ 67

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP-NGAIVLPGLDCHIPTAIWNTITE 276
             +     G     + A +  +  A       V     + A++       +       I +
Sbjct: 68   LSFSPESG-----LAAHTLDAFGAQWLWQKVVGEAESDRALLDVAQAARLAAEADRLIDD 122

Query: 277  KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
               ++     T          +    L  + +                  + K  +    
Sbjct: 123  WHIHVAPELETIDYQHFREWRQRYRTLLAQLDMEDGNLAYERITQAVCSGLLKIPVGALV 182

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                N          +       +L       +EA ++                ++  D 
Sbjct: 183  LAGFNELSPRLSGMLLAMQEQGASLAVLARPAQEAEAVQR--------------VVARDP 228

Query: 397  NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            +   R+ ++     +         +  +   + +      +           L  +    
Sbjct: 229  DGEWRLAVQWAAERLQAHPQGRYAIVASRLEADVVLAHRCLRAGLTDGQGNVLPYNVAVA 288

Query: 457  FGFPEKY-------LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
                +           R                   +   +    R            W+
Sbjct: 289  RPISDWPLVAAAISWLRVLARFVTKKTCPPAEVGSALLAGACAAARHEASGRAAIDVLWR 348

Query: 510  SRLSE--EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
             R +    + E A LL  H  Q            +      ++  W +     LQ +   
Sbjct: 349  QRAAVTVSEPEFARLLDQHAPQLAQAWRGSYEMLSGESSAATVDVWVQRFRQGLQALAYP 408

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                L +  +++       L S   +     K      + ++ RL      +P+ + ++ 
Sbjct: 409  GQSVLDSHSYQQLEAFDGLLDSLARQAPVMGKLGFSSAVGLLQRLAHETPFQPQRDPAAR 468

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAA 685
            L +LG LES    +D + + GL + V P     NPF+        +    T E+ +  A 
Sbjct: 469  LDVLGFLESEGGRWDGVWVLGLTDEVLPAAPKPNPFIPLAALRQAHAPRATPERELHWAK 528

Query: 686  HDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
              +         +  + +  E       S  +                     Y      
Sbjct: 529  TLYRSLLASAPQVWLSHAEYEGERELRPSPCIAAAAPSARALEPAASMPCSLEY------ 582

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                      +  +  P           + I     +P   +A+  L    + ++ +  D
Sbjct: 583  ---------IQDEQGPPLQAGHITRGGIAVIDTQARNPLWAFAKYRLGASELANYAELSD 633

Query: 805  RTDRGTLFHNIITELIKKRINKNTPE-------INHLMKQIIDSHFEKENLPPHI--DII 855
            +  RG L H  I  + +   ++           +  L++Q      ++           +
Sbjct: 634  QNARGLLLHKAIELVWRMLPDQQALRDLHAQGGLQALLEQSAQQAADECLQDYGAVVRGL 693

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
                   I   +L+ E+          V      +     + L+   DRID L+ G + +
Sbjct: 694  ETDRTITILQQWLQLEQARDP-FRVRDVEQ--TYSWSHGALQLSLRLDRIDELEDGRLAV 750

Query: 916  TDYKTGD----NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
             DYK+G            ++ +  QL   A+ L        +  +VA L   RL  +   
Sbjct: 751  IDYKSGGGRLDPRPDWMRERPVGLQLPFYASVLAG------EDARVAALVLARLHAREVQ 804

Query: 972  DCITNDKK--------KYSADELSEKSLKNL----IEIVTLLQNGEQPFISHLRLSEKSN 1019
                 D                 ++ + + L      I+  + +     ++        +
Sbjct: 805  VKGLADADYGFDGLSALADWPMFADCTWEQLMGEWRRIICQMADEYAAGVARNHSLRPDD 864

Query: 1020 I-QSEYDHLARVAE 1032
            I   +     R+ E
Sbjct: 865  IQYCDVLPFLRLNE 878



 Score = 41.8 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 86/873 (9%), Positives = 209/873 (23%), Gaps = 69/873 (7%)

Query: 36  YDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL--PIIKSLGDVVEEKFTADL 93
            + L  L   +V +     R  + + +E         +++  P I  L   + +      
Sbjct: 10  LEELARLDAENVLVLTVNNRHARRVLAEMSASLTGTRSVMAVPDIIPLSAWLRQ-----A 64

Query: 94  LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
               + +P        L+      +W+  + +   D             A A        
Sbjct: 65  ADQLSFSPESGLAAHTLDAFGAQWLWQKVVGEAESDRALLDVAQAARLAAEA-------D 117

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            +ID         E L  +  + +  W              +   L +L+          
Sbjct: 118 RLIDDWHIH-VAPE-LETIDYQHFREWRQR-----------YRTLLAQLDMEDGNLAYER 164

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH----IPTA 269
           + +A    L+K   G +++AG     P  + ++  +        VL              
Sbjct: 165 ITQAVCSGLLKIPVGALVLAGFNELSPRLSGMLLAMQEQGASLAVLARPAQEAEAVQRVV 224

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR-------EDVKRLGNVSNEMYG 322
             +   E    +  +      HPQ   A +   L+                G  +   Y 
Sbjct: 225 ARDPDGEWRLAVQWAAERLQAHPQGRYAIVASRLEADVVLAHRCLRAGLTDGQGNVLPYN 284

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            ++    S  P   + +    +L   +       ++V           A   A       
Sbjct: 285 VAVARPISDWPLVAAAISWLRVLARFVTKKTCPPAEVGSALLAGACAAARHEASGRAAID 344

Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN----AIF 438
              ++++A+  ++   AR +     +       S  +    +  +++   +         
Sbjct: 345 VLWRQRAAVTVSEPEFARLLDQHAPQLAQAWRGSYEMLSGESSAATVDVWVQRFRQGLQA 404

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL--------RGNKNSYDIMDLKS 490
                 ++     +   +           +  +             +   +       + 
Sbjct: 405 LAYPGQSVLDSHSYQQLEAFDGLLDSLARQAPVMGKLGFSSAVGLLQRLAHETPFQPQRD 464

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                       +    W         +   L          PL   +            
Sbjct: 465 PAARLDVLGFLESEGGRWDGVWVLGLTDEV-LPAAPKPNPFIPLAALRQAHAPRATPERE 523

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
             W K     L                E E +    + +      +   A ++       
Sbjct: 524 LHWAKTLYRSLLASAPQVWLSHAEYEGERELRPSPCIAAAAPSARALEPAASMPCSLEYI 583

Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP-------- 662
           +   G  ++        + ++ T     L        G +E       +           
Sbjct: 584 QDEQGPPLQAGHITRGGIAVIDTQARNPLWAFAKYRLGASELANYAELSDQNARGLLLHK 643

Query: 663 ---FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY--TRSLRENNIPTIASRWLQ 717
               + R++     L+      G  A   + A            ++            LQ
Sbjct: 644 AIELVWRMLPDQQALRDLHAQGGLQALLEQSAQQAADECLQDYGAVVRGLETDRTITILQ 703

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
           + L L        ++   Q Y      L  + +       +         +    S   +
Sbjct: 704 QWLQLEQARDPFRVRDVEQTYSWSHGALQLSLRLDRIDELEDGRLAVIDYK----SGGGR 759

Query: 778 LINDPYAVYARRI-LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
           L   P  +  R + L+L F        D      +   +    ++ +   +       + 
Sbjct: 760 LDPRPDWMRERPVGLQLPFYASVLAGEDARVAALVLARLHAREVQVKGLADADYGFDGLS 819

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            + D     +     +   WR +  +++  +  
Sbjct: 820 ALADWPMFADCTWEQLMGEWRRIICQMADEYAA 852


>gi|313771951|gb|EFS37917.1| UvrD/REP helicase [Propionibacterium acnes HL074PA1]
          Length = 1072

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 108/1061 (10%), Positives = 266/1061 (25%), Gaps = 146/1061 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     T +A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     +S    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160

Query: 138  LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184
                    + LA  +A        +   + +W  +                  W      
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+        +S       D     + +  +     
Sbjct: 341  QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +       H+            E     +  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +    +    L +   +
Sbjct: 567  IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
              ++   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  ARKSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            +GV+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711
             +      +  +                                     R   +    T 
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               + + +      +   ++   GQ       + D  T     +R        A P   +
Sbjct: 800  WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S+I +L  +P A   R  L+        +       GT FH  +++ +         + 
Sbjct: 860  TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889
              + +       ++E++      +        +   L    EE   +    + V     M
Sbjct: 915  EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968

Query: 890  AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             I      + G  D +       G   + D+KT      +        QLS+   A    
Sbjct: 969  TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                ID  +V    +  +     I           A  L+ 
Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|289523885|ref|ZP_06440739.1| hypothetical protein HMPREF1705_01833 [Anaerobaculum hydrogeniformans
            ATCC BAA-1850]
 gi|289502541|gb|EFD23705.1| hypothetical protein HMPREF1705_01833 [Anaerobaculum hydrogeniformans
            ATCC BAA-1850]
          Length = 959

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 109/734 (14%), Positives = 220/734 (29%), Gaps = 90/734 (12%)

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRF 409
            +   + + L    + R+E  ++A  L   ++E     K  A+           +  L  +
Sbjct: 267  EDRPAKIRLFTCGDPRQELETLARNLWFKVEEGVLTFKDIAIEIPS-PYKSIAEDVLNAY 325

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
             I     +G  L+ T+   ++  L  A  +   F+A   L+ +PL  F  P+        
Sbjct: 326  RIPWKSGSGKYLNETMCWDLVKRLKIAKDENWPFLATIGLLSNPLFGFDLPK-------- 377

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
              E +     +      +   ++    AT+               +       L   +L+
Sbjct: 378  --EFLEFLKERIPSGAKEWTDILSKSGATESTRIIKKWDSFFNHIKRGSNVESLFQRLLK 435

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             +   +  +    +   + S+ +        L+ +             E++  +L+    
Sbjct: 436  LLDDELEIRKRAGACVTDPSLDESLYEVSKFLEAL-------------EKKALSLAESLP 482

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            ++      + + A  W + + R  +   + P   K  ++ I       L      ++   
Sbjct: 483  ELGPAQKDMLSEAEGW-EYLNRFAEETRILPPKRKRESVTIYFDSSPVLATHKLYVVINA 541

Query: 650  NEGVWPKNTAKNPFLSRVMQS---------DLNLKTAEKYIGQAAHDFEMANGT--RHLI 698
                WP      P L+   +           ++L    +   Q    F            
Sbjct: 542  TSQQWPGKITDPPLLNDEARRIIHENANLAGIHLPLRHERRQQKEALFRRHLYASTEETW 601

Query: 699  YTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC--YLDWTRKLDYTT-KQPHY 754
             T S       P   S +L+               +R       +  R L      +   
Sbjct: 602  LTFSAIDAQGRPNKLSPFLEMDGEKEDLYIIVEETRRPLSKLLPEGERFLREAEVPKDKL 661

Query: 755  KRPKPFP-PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
             RP+  P P          S+I   +  P     R ILKL      +   D    G + H
Sbjct: 662  SRPRRKPIPSVKPKDEGYLSDIDTWVQCPALYAYRSILKL--FQPKEAGLDAQKCGNMLH 719

Query: 814  NIITELIKKRINKNTPEINHLMKQIIDSHFEKENL-----PPHIDIIWRHLFHKISHSFL 868
             + ++  K R ++    +   ++Q+ +   E                 R     +  + +
Sbjct: 720  LLWSKAWKMRSSEKGLSLEACVEQLWEEVVESTYPLLNHIRKLHRHRERLRLQVLRLARI 779

Query: 869  EHEEKIQSSIEKIFVNIPAKMA-IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
            + E  ++            ++       +   G ADRID LK     + DYKT  +   E
Sbjct: 780  QEEIYLKLRTAFASTEWERQLPPFTINDVSFRGRADRIDHLKEIGQILWDYKTAGSKNYE 839

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI---------RLKQKFKIDCITNDK 978
                    QL+  A AL          +K    FY+          + ++ K        
Sbjct: 840  N-----SLQLASYALALSK------ADQKTGGAFYLCHSDSMCLGHISKEHKGLDKRLVP 888

Query: 979  KKYS---------ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
            + YS          +++++++ + LI     L +G            K+    +Y  L R
Sbjct: 889  EGYSDNIKIKREKLEDIAKRAEEQLISWAKDLTSGSF----EPHYDRKTCKDCQYKVLCR 944

Query: 1030 V-----AEWREEYD 1038
                   EW E  +
Sbjct: 945  KSEIEGGEWLENGE 958


>gi|253750626|ref|YP_003024063.1| exonuclease RexB [Streptococcus suis BM407]
 gi|251819058|emb|CAZ55681.1| exonuclease RexB [Streptococcus suis BM407]
          Length = 1088

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 106/938 (11%), Positives = 240/938 (25%), Gaps = 121/938 (12%)

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
           + +  L +             L  +   ++       DL A+ +             L  
Sbjct: 97  FEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMDSPD-------KQADLVK 149

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249
                T+ L +                E   L +  K  + ++ G +        L+S +
Sbjct: 150 IFLAVTDILSKEGFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSAL 209

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
               +  ++          A +    E +    + +       Q+               
Sbjct: 210 NERVSEILIGVYASKKAVQATYA---EGNVYQANVDFLRQLSAQFQTKATYIG------Q 260

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
              L ++             S    D +                     + L E  N++E
Sbjct: 261 EPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQ---------------EKIQLWEVVNQKE 305

Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426
           E   +A A+R  + +    K   L+  D +  +        ++ I         +S    
Sbjct: 306 EVEQVATAIRQHVHQGARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPL 365

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              + SL            +  L+K  L            + +  EL          D+ 
Sbjct: 366 VHFVESLERLRRYRFRAEDLLNLLKSGL----------YASISQKELDLFESYILFADMK 415

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
              +         + +      + +    D  +   L   I++ +  L        +   
Sbjct: 416 GQAAFSRAFSVNGRADYDAEVIKEKRLVYDLTVLEPLRAKIMEPLNQLFKAGPQSGTALL 475

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              ++    + +            ++     E+  K+ + L     +     K    +++
Sbjct: 476 EKFMAFLEAIDLPKNMEKMSRNLSEVEQEKEEQVWKSFTHLLENFHQIFGKEKLKMDDFL 535

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            I+   +     +        + +             +   G+ +  +PK       L+ 
Sbjct: 536 AILQAGMQASHYRTVPATVDVVNVKSYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTE 595

Query: 667 VMQS----------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRW 715
                           +L + E      A    + N     L+ +     N      S +
Sbjct: 596 EEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNSATEQLVISTPQIYNEGEDSLSPY 655

Query: 716 LQRLLVLG------------------------------GTDFFDNLKKRGQC--YLDWTR 743
           ++ L  +G                                   +  +  GQ   +    R
Sbjct: 656 IKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLETEEWEGQRAFWTVLVR 715

Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRT---------------YSFSEIKQLINDPYAVYAR 788
            L    +    + P     + ++  +                S S +    N+ Y  + R
Sbjct: 716 HLKKKLESQSIEIPTITGDIASKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVR 775

Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
            +L+L         P     G   H I   ++  +   +  +             E    
Sbjct: 776 NVLRLREQESIH--PTAFQHGLFLHRIFERVVMDQSELDFDQKVDKAILCTRDEAEFAMF 833

Query: 849 P--PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAK----MAIE---SIGIHL 898
                       +  KI+ S         + + +I       +    +  +      +H+
Sbjct: 834 YNQDADARYTEEVLDKIARSSAT--ILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVHV 891

Query: 899 TGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
            G  DR+D L+ +  V + DYK+   +         + PQL    AAL+     +   + 
Sbjct: 892 NGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQE--LDETKDKP 949

Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
           V    Y+ L+        T + ++      +    K L
Sbjct: 950 VFGAMYLHLQDPIIKLKDTKNLEQLEGAANTSLVYKGL 987


>gi|169630596|ref|YP_001704245.1| ATP-dependent DNA helicase [Mycobacterium abscessus ATCC 19977]
 gi|169242563|emb|CAM63591.1| Probable ATP-dependent DNA helicase [Mycobacterium abscessus]
          Length = 1078

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 130/1105 (11%), Positives = 294/1105 (26%), Gaps = 164/1105 (14%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57
            +++  V    P          A    T+     +   N       V     T++A     
Sbjct: 20   DEQAAVIGAPPGPMVVIAGAGAGKTETMAARVVWLVANGYATPGQVLGLTFTRKAAAQLL 79

Query: 58   QELRSEFIEITGKKSTILPIIKSLGD---VVEEKFTADLLLSYNLNPPVSNIQRLLELAR 114
            + +RS    + G    + P+     D        +   LL  + L  P+    RLL   +
Sbjct: 80   RRVRSRLARLAGSG-ILAPVAADEPDPVIATYHAYAGTLLREHGLLLPMEPNARLLTETQ 138

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL-- 172
            L  +    + D   DL  ++  +     A  + LA  L++ +          ++L  L  
Sbjct: 139  LWQLAFRLVCDFDGDL--DTEKTPGAVTAQVLALAGQLSEHLVNTTDLLSSHDELERLIL 196

Query: 173  -------KNEKYGMWW-------LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
                   + E     W             L    +     +                R  
Sbjct: 197  TLPPGPRQREGGPSAWLLRLIETQRERTQLMAIVEQLIALMRTRGVLDFGAQMALSARLA 256

Query: 219  AEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVANHP--NGAIVLPGLDCHIPTAIW 271
            A+H       +     +++     +  A   L+S++          +    D       W
Sbjct: 257  ADHPIVGQTQRERYRVVLLDEYQDTGHAQRILLSSLFGRGVDPDLALTAVGDPIQSIYGW 316

Query: 272  NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
               +  +    +++            +L        E +    +VS E   RS+      
Sbjct: 317  RGASATNLPRFTTDFPLPDGSPAPTRELRTSWRNPPEALHLANSVSEEARRRSV------ 370

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--- 388
                         +   +P        +A     +   E   +A  L    ++  ++   
Sbjct: 371  ------------AVRPLLPRPDAASGRIACALLGDIAAEREWVATQLAAVYEQAHREGNR 418

Query: 389  ---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
               SA++    + A  +   L   G+  ++     L      +   ++L  +       A
Sbjct: 419  PPSSAVLVRRNSDAAPMAEALAAQGVPAEVVGLTGLLGLPEVADTVAMLRLVADPTAGPA 478

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
               ++  P  + G  +  +   +        RG   +      +   +  +A   ++   
Sbjct: 479  ALRVLTGPRWRLGAHDLVVLWRRA---TGFGRGGAPAVGPDVGEEADIPCLADAISDPGT 535

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
            P   S    +        +  +   +   +T    +      L +          L  + 
Sbjct: 536  PDEYSPEGWKRLTALRRELSALRARLGMPLTDLIAEVQRVLALDVELVAGRRGEGLDQL- 594

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIE 623
                              +++ F++  +    +      ++++D    +  G        
Sbjct: 595  -------------RAFTDVAAGFAESADQSDPVGVVSAFLQYLDAAWEIEKGLAPVEVAA 641

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV---------------- 667
                + IL    ++ L +D + +  L+ GV+P   A   +L+                  
Sbjct: 642  SPGRVQILTVHSAKGLEWDVVAVPHLSAGVFPSGVAAPTWLTSATELPPLVRGDRASQGD 701

Query: 668  ----------------------MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT--RSL 703
                                   +   +L T      +      +      L  +     
Sbjct: 702  QFGVPQLDTEGITNRKQLADAIARHKDSLATRRIDEERRLLYVAVTRCAEQLFVSGHHWG 761

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLK----KRGQCYLDWTRKLDYTTKQPHYKRPKP 759
            +    P   S +L  L  +  +   + +     +R         +     +    + P  
Sbjct: 762  QTGLKPKGPSDFLVELRDVIESAAAEGVPCGTVERWAPEPPAGERNPMLDQTVEAQWPAD 821

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYA-----------VYARRILKLDFIPHFKKDPDRTDR 808
                           ++  + D  A             A     L       + P+ T  
Sbjct: 822  PLAGRRDDIEAGARLVRAALADGAALTMEDDDDTDGWEADVDALLREREQGHRRPEMTLP 881

Query: 809  GTL-------FHNIITELIKKRINKNT--PEINHLMKQIIDSHFEKENLPPHIDIIW--- 856
              L              L ++        P+++        S  ++      +       
Sbjct: 882  QHLSVTSLVELRQDPQALARRLARPRPTRPDLDARRGTAFHSWVQRHYGSVRLIDFEDLP 941

Query: 857  ---------RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID- 906
                           +  +FLE E   +     + V +P ++++   GI + G  D +  
Sbjct: 942  GDGYGSFEDAEDLAALQSAFLESEWADR---TPVEVEVPFEISVA--GIVVRGRIDAVFG 996

Query: 907  -LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF-YIR 964
                     + D+KTG  P  +  +     QL++   A    S  +ID  +V  +F Y+R
Sbjct: 997  PDSAEDTWTVVDWKTGHEPAGDEMKAA-ALQLAVYRRAWA--SLREIDPARVRAVFHYVR 1053

Query: 965  LKQKFKIDCITNDKKKYSADELSEK 989
              +      + +        EL+  
Sbjct: 1054 SGRTVAPTELPDLPHAEELAELTRD 1078


>gi|182412469|ref|YP_001817535.1| ATP-dependent nuclease subunit B-like protein [Opitutus terrae
           PB90-1]
 gi|177839683|gb|ACB73935.1| ATP-dependent nuclease subunit B-like protein [Opitutus terrae
           PB90-1]
          Length = 989

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 133/969 (13%), Positives = 258/969 (26%), Gaps = 154/969 (15%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK--STI 74
           F     P L     +    +    PL L+ + + VPT+++ + LR    E   +K  +  
Sbjct: 36  FLSWDAPLLPQAVALLAEGWTGDGPLDLSDLLVIVPTRQSGRRLREALAEHAARKQAAVF 95

Query: 75  LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
            P +                      P       L  L     ++R+   D  +D++P  
Sbjct: 96  PPKVML------------PEALMTPAPAAGVATHLESLLAWADVFRSVALDDFRDVFPVD 143

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
           P     + A A+ LA+    +   +     +  D  +     +              ++ 
Sbjct: 144 P--PARNFAWALRLAEEFVRLQRSLAEAGLQLRDALSRAGSDFPE------------AER 189

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           W +                L+ A A  L +                            P 
Sbjct: 190 WRQISELETRHEQRLASAGLIDAPAARLRQA----------------------CTPELPG 227

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
           G   +  L    P  I                     P        D+   + E      
Sbjct: 228 GVRRIVMLATPDPQPIALQALAALARAVPVEVAVYA-PAAEADAFDDWGRPRPETWNTRT 286

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
               ++  R  +                +  E +                          
Sbjct: 287 LTVPDVAQRVHLCLDPEAQAARIAALAAEYREPEG------------------------- 321

Query: 375 AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                        +  L  AD  +   ++ EL           G          +L +  
Sbjct: 322 -------------RLGLGVADSEVLPLLQGELAEVRQVGFNPEGRARLGDQLFQLLQNCA 368

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
               +   F  +  L + P        +       A  L  L      +    L   +  
Sbjct: 369 RLARE-ESFATVQALARCPDFLEFLHGQLGPDFSAARFLHELDELHTRHLPPTLTEALQH 427

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
              +++    V    +  +      A+ L+  +   ++    +  N  +    +  +   
Sbjct: 428 VERSERPKPDVSSGPTHPANSRIGPALRLIAGLRATLSR-GDFPANAQAALAAVFGARRF 486

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           + +      +          L                        A+  +W D+  RL  
Sbjct: 487 ESSRDEDAQLAEAAETWSVVL------------QDIAAAAARFTAASNADWWDVALRLYG 534

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                 +    + + + G LE    +   L++ GLN+G  P     +PFL   ++  L L
Sbjct: 535 ENICYDEKVAGA-IELQGWLELLWEDAPHLVVAGLNDGRVPDAIVGDPFLPESLRERLGL 593

Query: 675 KTAEKYIGQAAHDFEMANG------TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
           KT      + A+  +           R  +          P   SR L R          
Sbjct: 594 KTNATRFARDAYLLQAIAAWRTGDPGRLDLLFGKTTVAGEPLRPSRLLLRCPD------- 646

Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
           + L  R +           T       R +P   + A P   + + I+  +  P+  Y  
Sbjct: 647 EELPGRIRQLFRPAESTHTTESWRRAWRLQPR--IVAPPTRIAVTAIRAWLACPFRFYLS 704

Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI-------NHLMKQIIDS 841
           R+L+++ +   K + D  D GTL H  +  + ++   ++  +           ++     
Sbjct: 705 RVLRMEAVDPAKSELDVFDFGTLCHAALEAMGREPALRDEQDAPRLREFLLARLELEAAR 764

Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
            F +    P +  +      ++S +                V  P ++ I    + +TG 
Sbjct: 765 RFGRHLALPLVVQLESAR-QRLSRAAEVQALSRAEGWVIEHVERPFEITI--GPLVVTGK 821

Query: 902 ADRIDLLK-SGFVDITDYKTGDNPKKETAQKLI------------------------DPQ 936
            DRID  + +G   + DYKT D P       L                         D Q
Sbjct: 822 IDRIDRHERTGARRVLDYKTSDRPVDPEQAHLRGWRREETAPALARFTYNAKEQVWTDLQ 881

Query: 937 LSLEAAALK 945
           L L   A++
Sbjct: 882 LPLYRLAVQ 890


>gi|295836626|ref|ZP_06823559.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
 gi|295826114|gb|EDY46535.2| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
          Length = 1174

 Score =  141 bits (355), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 69/591 (11%), Positives = 143/591 (24%), Gaps = 68/591 (11%)

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                      L+  PL      +          E  A          + L   +      
Sbjct: 559  SWIATETALDLLASPLCGMDAADLRRLGRALRAEERAAGNPVPLPSDVLLARALA----- 613

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                   P           + A  L   + +    L    T + +     + + W     
Sbjct: 614  ------EPERLIAHDAAYAKTARALGLLLARTRALLARGGTAEEALWELWNGTRWPARLE 667

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
               +           +L         ++      E  +  +       +   + I  +T+
Sbjct: 668  RASRRGGAGGRNADRDLDAVCALFATAA----RAEERTGGRGALNFLAETEAQEIAADTL 723

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
              +  +   + ++    ++ L +  +++ G+ EGVWP    +   L         L    
Sbjct: 724  SGRTVRPDAVRLMTAHRAKGLQWRLVVVAGVQEGVWPDLRQRGSLLEADRIGSDGLAEPL 783

Query: 679  KYIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
                  A                L+ T            SR+L  L V           +
Sbjct: 784  TRGALLAEERRLFYVAATRAADRLVVTAVKAPAEDGDQPSRFLTELGV--EPQHLTVRPR 841

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPK-----------------------PFPPLEAQPRTY 770
            R         +L  TT  P                             P           
Sbjct: 842  RPLAVPALVAELRATTVDPRASPALREAAARRLARLAALTDGEGRPLVPSAHPGTWWGLA 901

Query: 771  SFSEIKQLINDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNII 816
              +  +  + DP    A     L                +            G + H ++
Sbjct: 902  DETVNEVPVRDPDQPLALSASALGQLVDVCALQWFLGREVRAEAPASTAQGFGNVVH-VL 960

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
             + +    +    ++       +      +                    FL      ++
Sbjct: 961  ADEVATGRSPADLDVLMERLDTVWDGLAFDAPWKSAQERENAR--AALERFLRWHVLDRA 1018

Query: 877  SIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLI 933
                +    P  + + +    I + G  DR+D   +G   + D+KTG   P         
Sbjct: 1019 GRTPVASEHPFDVTLPAGEHEIRIRGTMDRVDADAAGRAYVVDFKTGKNAPTAAEVAHH- 1077

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
             PQL++   A+  G+   +     A L ++RL+   K       + +   +
Sbjct: 1078 -PQLAVYQRAVAEGAVGPLTPGG-AELVHLRLEASSKDPLSPKVQPQEPPE 1126



 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 77/682 (11%), Positives = 159/682 (23%), Gaps = 39/682 (5%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TLVE+             + +   +++A   LR       G      P   +       
Sbjct: 66  ETLVESVAARIAAGADPERLLVLTFSRKAAVALRDRMALRIG--PASAPRATTFHSYGYA 123

Query: 88  KFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
              A        +P   +S  ++ L +  L+     +     +            +    
Sbjct: 124 LVRAHQEAGPEGSPVRLLSGPEQDLAVRELLEG---ETALSAEGRGRVRWPGQLRACLTT 180

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
              A  +  ++          + LH          W  AA FL         + V   A 
Sbjct: 181 RGFADEVRAVLARSRELGLGPDALHRFARRTGRPDWQAAAAFLAEYLDVLDLQGVIDYAE 240

Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                 +   R +    +  +   + +     + PA  RL+  +A    G  +L   D  
Sbjct: 241 LVHRADLLARRPDVARELAASYDAVYVDEYQDTDPAQVRLLDALAG--QGRTLLAFGDPD 298

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +                                      V+ L            
Sbjct: 299 QSIYAFRGADVNGILGFPDTFRTREG--------------APAPVRVLPAARRAARAVLD 344

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                 L    + +    +  ++     +   DVA+    +   E   +A  LR +  E+
Sbjct: 345 ATRALTLRIPLTRLPAAAVRAHREQLPTREGGDVAVHTCPSPGAETDHVADLLRRAHLED 404

Query: 386 KKKS---ALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441
                  A++    +    ++  LT  G+ ID      PL        L + L A     
Sbjct: 405 GLPWGDMAVLLRAGHRLPALRRSLTAAGVPIDTEGDELPLRLEPAVQPLLTALRA----- 459

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
              A       P  +        + A       A  G +             +R      
Sbjct: 460 TAEAETRAETAPHGEADTDPGPGTGAGQGDGAEAGAGAETGGGAGPAPEAEGERAPDAG- 518

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                     + E D                      +++ S     +  D     +  +
Sbjct: 519 -PAPGAESVPVPEPDAGPVPEPAPGDPAPAPAGPGQPSHEPSWIATETALDLLASPLCGM 577

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
               L    +         G  +      ++          I       +      +   
Sbjct: 578 DAADLRRLGRALRAEERAAGNPVPLPSDVLLARALAEPERLIAHDAAYAKTARALGLLLA 637

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL-----KT 676
             ++         E+    ++        E    +  A      R + +   L     + 
Sbjct: 638 RTRALLARGGTAEEALWELWNGTRWPARLERASRRGGAGGRNADRDLDAVCALFATAARA 697

Query: 677 AEKYIGQAAHDFEMANGTRHLI 698
            E+  G+ A +F      + + 
Sbjct: 698 EERTGGRGALNFLAETEAQEIA 719


>gi|314967655|gb|EFT11754.1| UvrD/REP helicase [Propionibacterium acnes HL037PA1]
          Length = 1072

 Score =  141 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 108/1061 (10%), Positives = 265/1061 (24%), Gaps = 146/1061 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     T +A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     +S    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHME 160

Query: 138  LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184
                    + LA  +A        +   + +W  +                  W      
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+        +S       D     + +  +     
Sbjct: 341  QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +       H+            E     +  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +    +    L +   +
Sbjct: 567  IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
               +   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            +GV+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711
             +      +  +                                     R   +    T 
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               + + +      +   ++   GQ       + D  T     +R        A P   +
Sbjct: 800  WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S+I +L  +P A   R  L+        +       GT FH  +++ +         + 
Sbjct: 860  TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889
              + +       ++E++      +        +   L    EE   +    + V     M
Sbjct: 915  EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968

Query: 890  AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             I      + G  D +       G   + D+KT      +        QLS+   A    
Sbjct: 969  TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                ID  +V    +  +     I           A  L+ 
Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|84494608|ref|ZP_00993727.1| putative DNA helicase [Janibacter sp. HTCC2649]
 gi|84384101|gb|EAP99981.1| putative DNA helicase [Janibacter sp. HTCC2649]
          Length = 1103

 Score =  141 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 112/1055 (10%), Positives = 256/1055 (24%), Gaps = 150/1055 (14%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITG---KKSTILPIIK--------SLGDVVEEKFTADLL 94
             V     T++A  EL            +     P           ++       +   L+
Sbjct: 75   DVLGLTFTRKAATELSDRIGNRLAQLRRVGLWTPQEVDGAPSLGAAVSVSTYHSYAGRLV 134

Query: 95   LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
              + L        RLL  A         +      +         +  A  + LA  +A+
Sbjct: 135  REHGLRLGYEADTRLLSEAAAWQTAHEAVVRYDGPMDEVDKAESTV-TAAVVDLAGEMAE 193

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWL-------------LAADFLKIASKYWTERLVE 201
             +   E+     + +     +                         +      + E    
Sbjct: 194  HLQTPESVAAHLDRVIEHLEQLERGDTKKRVNPVAGELTNLRLRRAVLPIVGRYAELKRS 253

Query: 202  LNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN-G 255
             +A           +          + +     +++     +  A   L+  +   P   
Sbjct: 254  RDAMDFADQMALAAQLAMTFDDIGAIERARHRVVLLDEFQDTSEAQLALLKALYVAPGET 313

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            + V    D H     W   +  +    +         Q         L     +   +  
Sbjct: 314  SAVTAVGDPHQSIYGWRGASATTLTRFAVEFGDPDPAQKL------DLSTSWRNDSAVLA 367

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
            V+N +       S+               +E            V +       +EA  IA
Sbjct: 368  VANHLAQPLRAASRVK-------------VEPLASRPGAGVGAVEVARLTTAADEADHIA 414

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              L          +A++   R     V   L   GI  ++     L  T     + +LL+
Sbjct: 415  RWLATHRSRGAVSAAVLCRKRAEFATVTAALEEHGIPHEVVGLGGLLLTPEVEDVVALLH 474

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             +        +  L+  P+ + G  +     A + ++    RG   +    DL     + 
Sbjct: 475  VVQDPARGDHLVRLLSGPMMRLGIADLDALAAWSRVQQRL-RGGAVARHEKDLAPDAAN- 532

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
             A                 ++ E    +    L  +   V              + +  K
Sbjct: 533  -APSIIEALDSLPPRGWVGDEGERLSDVARDRLAGLAATVRRMRGLTFLPLADLVLEAEK 591

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                 ++ +   E+         +    +++ FS+  +  +      ++WI        G
Sbjct: 592  ALGLDIEVLSRPEYTPAAARAHLDAFGDVAAQFSQSADRATLGGF--LDWIKAAIDEERG 649

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK------------------- 656
                        + ++    ++ L +D + +  L E  +P                    
Sbjct: 650  LDRGYADATPDAVQVMTIHAAKGLEWDVVAVPALVESTFPAHNLHSPSFKDGQWRISAPK 709

Query: 657  -----NTAKNPFLSRVMQSDLNLKTAEKYI-------------------------GQAAH 686
                    ++  L   ++ D +      +                           +   
Sbjct: 710  DKGWLAGLQDGGLPYELRGDRDGLPEFGWRSAVGWDELAARLEEFAVSGGEHAVAEERRL 769

Query: 687  DFEMANGTRHLIYTRS--LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
             +  A   RH +   +        P + SR+L  +  L   +                  
Sbjct: 770  AYVAATRARHALLLTASVWSRPKTPRVTSRFLDEVRELASVEGSPVRILEWVDLPVPPED 829

Query: 745  LDYTTKQ-------------------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                 K                                 ++    + + +     +   +
Sbjct: 830  GSPLVKPGTEDGHEFVWPVDHLGHRRVRADAAARAVTEASEGPESTSATVGPWARELDLL 889

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNII--TELIKKRINKNTPEINHLMKQ------ 837
             A R  +        + P      +L            +             ++      
Sbjct: 890  LAERARRASRHDDIVELPSHLSTSSLVAFATDPERFAAELRRPMPSAPAQAARRGTAFHA 949

Query: 838  IIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
             I+ H+ +  +            D +       +   FLE     +   E I +    + 
Sbjct: 950  WIEEHYARAAIVDLFDLPGSADEDPMGDAELPAMRERFLESPWAAR---EPIEIETALET 1006

Query: 890  AIESIGIHLTGFADRIDLLKSGF-VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
             ++  G+ + G  D +     G    I D+KTG  P      ++   QL+    A     
Sbjct: 1007 VVD--GVAIRGRIDAVFADVEGSDWVIVDWKTGRKPSG-EVARMRALQLAAYRIAWAR-- 1061

Query: 949  FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
               +D ++V+  FY     +     + ++ +    
Sbjct: 1062 LRGVDPQRVSGGFYYAGTGETVWPVLADEAEISDL 1096


>gi|170017500|ref|YP_001728419.1| ATP-dependent nuclease, subunit B [Leuconostoc citreum KM20]
 gi|251764605|sp|B1MZM3|ADDB_LEUCK RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|169804357|gb|ACA82975.1| ATP-dependent nuclease, subunit B [Leuconostoc citreum KM20]
          Length = 1171

 Score =  141 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 105/963 (10%), Positives = 257/963 (26%), Gaps = 142/963 (14%)

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL--KNEKYGMWWL 182
            DI++D   + P+       +       L   +  +       EDL  +  +      +  
Sbjct: 107  DILRDYAAQLPIF--ARMQSKAGFVTTLVAQLVELRASRISPEDLLTILNQESDDDTFLR 164

Query: 183  LAA----DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238
                     L I +    +++     +          +     L           G  G 
Sbjct: 165  QTLSGKLRDLAIVADALDKKMGHTYITQQEVLSFFATQLATTQLKNVAF---YFDGFNGF 221

Query: 239  I-PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
              P T  ++  +A +P    +L  ++        +   +  T             Q  + 
Sbjct: 222  TSPETQVMIELMARYPVTVALLGDVEKLGSQQPGDLFYKPMTTAQRLAQFTKIANQQVVW 281

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
            ++                       ++  + +S +   ++  +  +  +    N +   +
Sbjct: 282  QV---------------------PTQARCLDESIISVMSAWEKLGEYRQF---NSENKKT 317

Query: 358  DVALIEADNEREEAISIAIALRMSL----DENKKKSALITAD-RNLARRVKLELTRFGIN 412
            ++A   A+N   E   +A  +R  L    D   +   ++  D       +   + +F + 
Sbjct: 318  NLAAFVAENTMVEIQEVARRIRQLLVAQPDLRLRDILILARDLTPYTGHIPEVMQQFDLP 377

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP-----EKYLSRA 467
              +     ++      +L +LL    +   +  +  ++K  L +         E      
Sbjct: 378  YFLDTDQKMTNHPLVELLLNLLRPAKERFQYQQVMAILKTGLLRPYTDGSLVPEGDFFDI 437

Query: 468  KNALELVALRGNKNSYDIMDLKS--LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV- 524
             + L+              DL     +      + +         +      E     V 
Sbjct: 438  VSYLDNYLYANQPFERTWRDLDHPFTLFTVSEDEDDEDARVVLDDKTVNRRIETLRRFVI 497

Query: 525  ---DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
               D + Q +    T +         L     T+  ++    +             EE  
Sbjct: 498  DAFDSLQQQLNQAQTMRQAATLIILWLEKYHVTEAILSQRDTLLAAGELSRSR-EGEEVW 556

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            + ++     I+      +    ++  I+    +G T          L I      +  ++
Sbjct: 557  EMMTQTLDDIVAIDGDERFELEKFKAILVAGFEGATFSGIPNNLDQLTISEAGIVQSNDY 616

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE------------KYIGQAAHDFE 689
              L   G      P        ++   +  +     E            + + +    F 
Sbjct: 617  QYLFFIGGTRNNLPAQLKSRALINDAERLIVQPALQENSTPKYLQNTAQQQMAEENLLFY 676

Query: 690  MANGT--RHLIYTRSLRENNIP-TIASRWLQRL--------------------------- 719
             A     ++++ +    +     +  S + +RL                           
Sbjct: 677  GALTAATKNIVLSYPALDAGGQISDMSPFFKRLVDAFNITVNKVTATPATSQALLKYYVG 736

Query: 720  ---LVLGGTDFFDNLKKRGQCYLDW--------TRKLDYTTKQP------HYKRPKPFPP 762
                 LG        +++   Y             +L+     P         +P+    
Sbjct: 737  SVRSTLGELVKIAASQQQTSAYQALRNTINQSEPERLERVLSAPNYKNQTETLKPELVQA 796

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            L  +    S S+++   N+P A + +  L L          +    GTL+H +   ++++
Sbjct: 797  LFGETLNMSISQLESYYNNPLAYFLQYGLALKER--LTNRLNVAQTGTLYHAVFEGVVQQ 854

Query: 823  RINKNT---PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE---------- 869
             I +           ++Q++  +  +    P   ++      + +  +L           
Sbjct: 855  LIIQQLSLRDISQKALQQLVADNMAEITAQPAYQMLQETGKMRATQHYLAKVSEILAVNM 914

Query: 870  HEEKIQSSIEKIFVNIPAK-----------MAIESIGIHLTGFADRID-LLKSGFV-DIT 916
                  +  +   V                ++     +HL G  DR+D    S     I 
Sbjct: 915  QRAARVNHAQPKAVERLFGFPNRQSLPALVVSTPQATVHLRGKIDRLDSQDPSQVYGTII 974

Query: 917  DYKTGDNPKKE-TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
            DYK+         A      QL     A +  +  Q+    +   F+ ++  +       
Sbjct: 975  DYKSNGKHFDWGQAYDGRQMQLLTYWQAAQLSA-EQLGIEAIGGAFFAKIAPEKLTIKDF 1033

Query: 976  NDK 978
               
Sbjct: 1034 KGD 1036


>gi|17988306|ref|NP_540940.1| ATP-dependent nuclease subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|17984079|gb|AAL53204.1| ATP-dependent nuclease subunit a [Brucella melitensis bv. 1 str. 16M]
          Length = 1180

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%)

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131
            +L  +  + +  ++     L +    +       +   LE A  +      L        
Sbjct: 241  LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300

Query: 132  PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E      +  A    L     +  D      E   + L  L   +     L A   +  
Sbjct: 301  GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
              + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358  LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243  ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +++                      V +         G            I+ +++N  
Sbjct: 418  WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283  SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                  S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478  LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
                +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538  EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589  DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A L+K PL  +     +                  +       + +   ++  +N     
Sbjct: 649  AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  +      A      +L  + P      ++       +           L+ +  
Sbjct: 709  PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                    L    +   + ++ +     G+ +             L+D  +      ++ 
Sbjct: 767  AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L               L     +              +R  +    L        +   
Sbjct: 815  KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                  GTR    T      +     S      +       +    +      +  +   
Sbjct: 875  IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805
             +     +   +P       PR  + S    LI           L    +      P   
Sbjct: 935  TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RGT  H ++  L      K        + +I                       ++  
Sbjct: 993  LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037

Query: 866  SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                H          +F         +   + I      ++G  DRI + +S  V I DY
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096

Query: 919  KTGDNPKK--ETAQKLIDPQLSLEAAALK 945
            KT   P K  E        QL+L    L+
Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125


>gi|146343946|ref|YP_001201802.1| hypothetical protein pQBR0054 [Pseudomonas fluorescens SBW25]
 gi|146187758|emb|CAM96086.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 907

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 119/872 (13%), Positives = 248/872 (28%), Gaps = 105/872 (12%)

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            K     W E + +  A +PV   +A +++  +         I          +T      
Sbjct: 63   KWIETTWLELMPDEQALNPVQE-LATVKSVIDQSDLLPSNMI---------SSTNAARRV 112

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
               +      L G+D       +    E      +   +     QY     L  L +  +
Sbjct: 113  GVAYSQVNKYLIGMDSD--RFRFKEEFEAFLQWKTQLDSVCGAKQYVFRAHLPTLLL--K 168

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
             +K       E      ++S +       D       +  I + +   +   L+ + N  
Sbjct: 169  AIKAGDVQPPERVIIVGMMSLNPAEKAVFDALEDLGTDVIIVSAEGDKTTPRLVRSHNNA 228

Query: 369  EEAISIAIALRMSLDEN-------KKKSALITADRNLARRVKLELTRF------------ 409
             E + +A  +   L             + ++   R+    +   L+              
Sbjct: 229  SEMLEVAQWVSNHLLPFVDAPHAAPSLAIVVPDIRSYKGPLIDALSLHTSPGSLMPAGPD 288

Query: 410  ---GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
                   DIS+G  L +         LL+      D    + +++         E     
Sbjct: 289  GETRAPWDISSGATLGSRPMIRAAMDLLSITPDKADSETFSRVLRSRWIAGHVGESATRA 348

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
              +                       L        N     +   +     +        
Sbjct: 349  LLD-----------------------LWFRDNLGLNMGGKDFLRAIGAYKGDAVPDFRKR 385

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
                +  LV+ +        +   S+W       L ++      +L +  F+       +
Sbjct: 386  FGGLLEKLVSGEQ-------SRYPSEWADHFTEALNDMGWPGQSELDSANFQTLNAWAEA 438

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            L                     +  ++D    +P+I   + + ILG  ++  LNFD L +
Sbjct: 439  LAMFRTLDAQLGTVQYERAFMWLREVVDTRQFQPRISHLAPVSILGYEDAIGLNFDALWI 498

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA--EKYIGQAAHDFEMANGTR-HLIYTRSL 703
             G +  V P     +PF+   +Q D  +  A  E  +  A         +   +  +   
Sbjct: 499  VGASNNVLPGRAEPSPFIPTDLQIDAGISDASSEGMLAYAQSVVSALLSSSADVTVSCPS 558

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
                   I +  L              L+ +G    D   KLD    +   +       +
Sbjct: 559  HNEKGAAIGASEL----FGAWPATAPTLETKGDFLDDLMGKLDRNNYEQ--EEVPAVSDI 612

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
            E           K     P+  + R  L+ +  P      D   +GT+ H ++ +   + 
Sbjct: 613  ELTDIKGGVRIFKDYAESPFFSFVRNRLRANMFPQPIIGLDPRIQGTMIHLVLEKFWTEV 672

Query: 824  INKNTPEI--NHLMKQ--------IIDSHFEKENLPPHIDI--IWRHLFHKISHSFLEHE 871
            +     +      +K           +    K      + +  + +     ++  +LE E
Sbjct: 673  VTSKALKAFSVAELKAKVQHHTQLASEDLLYKLIWRYGMKLIMLEQRRIVDLTIEWLELE 732

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD---RIDLLKSGFV---DITDYKTGDNPK 925
            +K +   E I       + +  + + ++   D   RI L     V    + DYKTG   +
Sbjct: 733  KKREFEFEVIGFEERHDIVVGQVPLTVS--LDRRERIFLNDEQTVSRSVVFDYKTGQEMR 790

Query: 926  KET--AQKLIDPQLSLEA-------AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
              +  A  L +PQL + A       A+++      +      +L +   +  F  + +  
Sbjct: 791  MNSLNASTLTEPQLPIYATKIDLSVASVEPIDGIVLAQVNQKSLGF-HARSNFSANLVEG 849

Query: 977  DKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
             K +    + S+K           L +    F
Sbjct: 850  KKARQEDVDTSDKWEAQKDAWNRQLDSMSAGF 881


>gi|62290945|ref|YP_222738.1| UvrD/Rep family helicase [Brucella abortus bv. 1 str. 9-941]
 gi|82700856|ref|YP_415430.1| UvrD/REP helicase [Brucella melitensis biovar Abortus 2308]
 gi|189025157|ref|YP_001935925.1| UvrD/REP helicase [Brucella abortus S19]
 gi|237816450|ref|ZP_04595443.1| double-strand break repair helicase AddA [Brucella abortus str. 2308
            A]
 gi|254690236|ref|ZP_05153490.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870]
 gi|254731267|ref|ZP_05189845.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292]
 gi|256258489|ref|ZP_05464025.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68]
 gi|260546208|ref|ZP_05821948.1| UvrD/REP helicase [Brucella abortus NCTC 8038]
 gi|260755777|ref|ZP_05868125.1| double-strand break repair helicase AddA [Brucella abortus bv. 6 str.
            870]
 gi|260759000|ref|ZP_05871348.1| double-strand break repair helicase AddA [Brucella abortus bv. 4 str.
            292]
 gi|260884801|ref|ZP_05896415.1| double-strand break repair helicase AddA [Brucella abortus bv. 9 str.
            C68]
 gi|297247330|ref|ZP_06931048.1| double-strand break repair helicase AddA [Brucella abortus bv. 5 str.
            B3196]
 gi|62197077|gb|AAX75377.1| helicase, UvrD/Rep family [Brucella abortus bv. 1 str. 9-941]
 gi|82616957|emb|CAJ12061.1| UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) [Brucella
            melitensis biovar Abortus 2308]
 gi|189020729|gb|ACD73451.1| UvrD/REP helicase [Brucella abortus S19]
 gi|237788517|gb|EEP62732.1| double-strand break repair helicase AddA [Brucella abortus str. 2308
            A]
 gi|260096315|gb|EEW80191.1| UvrD/REP helicase [Brucella abortus NCTC 8038]
 gi|260669318|gb|EEX56258.1| double-strand break repair helicase AddA [Brucella abortus bv. 4 str.
            292]
 gi|260675885|gb|EEX62706.1| double-strand break repair helicase AddA [Brucella abortus bv. 6 str.
            870]
 gi|260874329|gb|EEX81398.1| double-strand break repair helicase AddA [Brucella abortus bv. 9 str.
            C68]
 gi|297174499|gb|EFH33846.1| double-strand break repair helicase AddA [Brucella abortus bv. 5 str.
            B3196]
          Length = 1180

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%)

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131
            +L  +  + +  ++     L +    +       +   LE A  +      L        
Sbjct: 241  LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300

Query: 132  PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E      +  A    L     +  D      E   + L  L   +     L A   +  
Sbjct: 301  GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
              + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358  LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243  ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +++                      V +         G            I+ +++N  
Sbjct: 418  WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283  SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                  S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478  LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
                +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538  EMVEEPDDWRVPVDQLAVPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589  DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A L+K PL  +     +                  +       + +   ++  +N     
Sbjct: 649  AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  +      A      +L  + P      ++       +           L+ +  
Sbjct: 709  PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                    L    +   + ++ +     G+ +             L+D  +      ++ 
Sbjct: 767  AAPEIKRELDQGRDEVRIMTMHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L               L     +              +R  +    L        +   
Sbjct: 815  KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                  GTR    T      +     S      +       +    +      +  +   
Sbjct: 875  IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805
             +     +   +P       PR  + S    LI           L    +      P   
Sbjct: 935  TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RGT  H ++  L      K        + +I                       ++  
Sbjct: 993  LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037

Query: 866  SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                H          +F         +   + I      ++G  DRI + +S  V I DY
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096

Query: 919  KTGDNPKK--ETAQKLIDPQLSLEAAALK 945
            KT   P K  E        QL+L    L+
Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125


>gi|261837794|gb|ACX97560.1| hypothetical protein KHP_0349 [Helicobacter pylori 51]
          Length = 778

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 133/389 (34%), Gaps = 50/389 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +     S  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLSDKKNLQKHYYYQLFKNSKEIALSYIESETSKV---SNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +    T                   ++S S +   +
Sbjct: 494 NLHIEPIKDAYTLFAPSPLKDYQEEEIKATIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +     +  G L H ++ E+ +   +KN   +   + Q++
Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---SNSAIGNLLHELLKEVYE--KDKNPYALEERLIQLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    + N+ P   +       KI  +F   E++   + I+ + +    +  I+  G+  
Sbjct: 595 E---TRGNITPKERLDTLIALKKI-QAFYVKEKERFNAKIKILDLEKSFETTIQ--GVAF 648

Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID +    + + DYK               G     E AQ   D Q+++ A AL
Sbjct: 649 KGRIDRIDKMADNEIILLDYKFKSDLKLDNMSEKQRGSLSPIEIAQISADYQMAIYAFAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
           K   +           F+  L++   ++ 
Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEE 732


>gi|15678500|ref|NP_275615.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621541|gb|AAB84978.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 916

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 111/957 (11%), Positives = 271/957 (28%), Gaps = 140/957 (14%)

Query: 3   NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
            + P V    P +   R ++       +    +   ++P    ++ +   T++A  EL++
Sbjct: 23  TEGPLVVVAGPGAGKTRVLVE-----RVAYLVKRKGVSPE---NILVITFTEKAAGELKA 74

Query: 63  EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
             I   G  + ++  I ++     +  +                               +
Sbjct: 75  RLINCVGLDAELM-QISTIHSFCSKVLSDHPE-------------------EHEFGAGFE 114

Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLA--DIIDIIETEEKKWEDLHALKNEKYGMW 180
           + D    L     +   I     + + +     +  +       + E+L      KY   
Sbjct: 115 ILDEESQLIFLRTVFYKIGLDRYMKMGEVHRAIEFFNRCTENCIEPEELINALRRKYPD- 173

Query: 181 WLLAADFLKIASKYWTERLVELNASSP---VGYQIALMRAEAEHLMKGT--KGPIIIAGS 235
                  + +    + E L E               L+ +    L         I+I   
Sbjct: 174 -REEYQGIAVCYARYLELLREQKKIDFPGLEKEVYLLLNSSERVLESVRKKYRYIMIDEY 232

Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
             + P    ++  +A   +   V+   D       +   T ++                 
Sbjct: 233 QDTSPIQELILREIAGKNSSICVV--GDEDQSIYGFRGATPENFIRFREEYDAEVVTLED 290

Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
             +    + +  +   R                                 E  I  ++  
Sbjct: 291 NFRSRAGIVLTADSFMR----------------------------GERHYEKTIKPVRDG 322

Query: 356 FSDVALIEADNEREEAISIAIALRMS-----LDENKKKSALITADRNLARRVKLELTRFG 410
            +DV ++++ +   EA +I   ++       + E    + L  + RN A +V  EL R G
Sbjct: 323 GTDVVILKSRDVNSEARNIVSLIKKLKSSGKIPEYGYVALLFRSVRNHADKVLAELRREG 382

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
           I   +              +   L  +   +                          +  
Sbjct: 383 IPYIVRGDGSFLKRYEVRSMLYFLAYVDPPDYG-----------------------GRFR 419

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                   ++   + +DL    L  + +   N  +  + SR   E+  +     + IL  
Sbjct: 420 KWDGWWNISRFRGEFLDLTGETLRALESLDRNCRLSDFTSRRELEEIGVHGEDAEKILGL 479

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
               + ++  K S     +     ++T    + +          ++   +  +L   +  
Sbjct: 480 NR--IRHEVGKGSLTVLSTFYSILEVTGYLRRLIEDGSDSSRAKIFNLAKLSSLIDRYEA 537

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
           I         + + ++ ++   +  +    +    +++ I+   +++ L F  + +  + 
Sbjct: 538 IKPGARIQ--DLLWYLYLLPTHLHHDEAALEDP--ASVKIMTVHQAKGLEFPVVFICSVI 593

Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIP 709
            G +P    K    +  +  +L L   E         +      +  LI + + R N   
Sbjct: 594 NGRFPVKRRKERD-TIPIPGELLLSPGEVPDEDRRLFYVAMTRAQDALIISTAPRINTRK 652

Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
              S ++  L    G    D            +R L+                   +P  
Sbjct: 653 VGVSPFITDLREKCGIYECDCT--------SVSRCLER--------------EWSEEPLR 690

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
            +FS +      P+           +   F +       G + H  + EL     N +  
Sbjct: 691 INFSALFTYEECPFRYMLIYHYGFVYPETFMQR-----YGIILHRCLEELHLAMKN-SEE 744

Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
               L+++I++  +        +    +    +   ++  + +    + E + V  P   
Sbjct: 745 INGALIRRIVERCWIPMGRDDKVK---KRRLERELLNY--YHDTRDHTGEVVSVEEPFS- 798

Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            I    I + G  D I   + G +++ D+K          +  ++ QL     AL+ 
Sbjct: 799 -IPDTDIIIEGRTDLIIRTRDGELELVDFK--AREHGGVERMALEYQLRTYEYALRE 852


>gi|254694724|ref|ZP_05156552.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str.
            Tulya]
 gi|261215053|ref|ZP_05929334.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str.
            Tulya]
 gi|260916660|gb|EEX83521.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str.
            Tulya]
          Length = 1180

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%)

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131
            +L  +  + +  ++     L +    +       +   LE A  +      L        
Sbjct: 241  LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300

Query: 132  PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E      +  A    L     +  D      E   + L  L   +     L A   +  
Sbjct: 301  GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
              + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358  LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243  ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +++                      V +         G            I+ +++N  
Sbjct: 418  WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283  SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                  S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478  LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
                +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538  EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589  DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A L+K PL  +     +                  +       + +   ++  +N     
Sbjct: 649  AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  +      A      +L  + P      ++       +           L+ +  
Sbjct: 709  PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                    L    +   + ++ +     G+ +             L+D  +      ++ 
Sbjct: 767  AAPEIKRELDQGRDEVRIMTMHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L               L     +              +R  +    L        +   
Sbjct: 815  KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                  GTR    T      +     S      +       +    +      +  +   
Sbjct: 875  IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805
             +     +   +P       PR  + S    LI           L    +      P   
Sbjct: 935  TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RGT  H ++  L      K        + +I                       ++  
Sbjct: 993  LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037

Query: 866  SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                H          +F         +   + I      ++G  DRI + +S  V I DY
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096

Query: 919  KTGDNPKK--ETAQKLIDPQLSLEAAALK 945
            KT   P K  E        QL+L    L+
Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125


>gi|289428125|ref|ZP_06429828.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|289158725|gb|EFD06926.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|313807183|gb|EFS45676.1| UvrD/REP helicase [Propionibacterium acnes HL087PA2]
 gi|313825512|gb|EFS63226.1| UvrD/REP helicase [Propionibacterium acnes HL063PA1]
 gi|327327125|gb|EGE68904.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
            HL096PA3]
 gi|327443750|gb|EGE90404.1| UvrD/REP helicase [Propionibacterium acnes HL013PA2]
          Length = 1072

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 108/1061 (10%), Positives = 264/1061 (24%), Gaps = 146/1061 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     T +A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     +S    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160

Query: 138  LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184
                    + LA  +A        +   + +W  +                  W      
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+        +S       D     + +  +     
Sbjct: 341  QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +       H+            E     +  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +         L +   +
Sbjct: 567  IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRGHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
               +   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            +GV+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711
             +      +  +                                     R   +    T 
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               + + +      +   ++   GQ       + D  T     +R        A P   +
Sbjct: 800  WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S+I +L  +P A   R  L+        +       GT FH  +++ +         + 
Sbjct: 860  TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889
              + +       ++E++      +        +   L    EE   +    + V     M
Sbjct: 915  EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968

Query: 890  AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             I      + G  D +       G   + D+KT      +        QLS+   A    
Sbjct: 969  TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                ID  +V    +  +     I           A  L+ 
Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|208434307|ref|YP_002265973.1| hypothetical protein HPG27_341 [Helicobacter pylori G27]
 gi|208432236|gb|ACI27107.1| hypothetical protein HPG27_341 [Helicobacter pylori G27]
          Length = 773

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/395 (15%), Positives = 134/395 (33%), Gaps = 51/395 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +    AS  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEITLSYIESETSK---ASNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +                         +S S +   +
Sbjct: 494 NLHIEPIKDAYTLFATAPLKDYQEEEIKAAIPKD--------------FNFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +   + +  G+L H ++ E  +   +KN   +   +  ++
Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSAVGSLLHELLKEAYE--KDKNPYALEERLIWLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    +EN+ P   +       KI  +F   E++   + I+ + +    +  I+  G+  
Sbjct: 595 E---TRENITPKERLDTLVALKKI-QAFYLKEKERFKAKIKILDLEKSFETIIQ--GVIF 648

Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDP-----QLSLEAAALKA 946
            G  DRID      + + DYK              +T ++ + P     Q+++ A ALK 
Sbjct: 649 KGRIDRIDKTADNEIILLDYK---FKSDLKLDNMSKTQREGLSPISTDYQMAIYAFALKN 705

Query: 947 GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
             +           F+  L++   ++      +  
Sbjct: 706 LGYKG-----PIKAFFYDLRKGELLEEDELTLQAK 735


>gi|265983090|ref|ZP_06095825.1| double-strand break repair helicase AddA [Brucella sp. 83/13]
 gi|264661682|gb|EEZ31943.1| double-strand break repair helicase AddA [Brucella sp. 83/13]
          Length = 847

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 89/830 (10%), Positives = 201/830 (24%), Gaps = 93/830 (11%)

Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA--------E 220
           L  LK  +     L A   +    + + +                 +   A        +
Sbjct: 3   LDRLKELRLVRLNLAALALIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQ 62

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMS--------------------TVANHPNGAIVLP 260
           + +      I++  +  + P   +++                      V +         
Sbjct: 63  YKLDRGIDHILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQ 122

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNV 316
           G            I+ +++N        S +  +     + + +D +  + E  + L   
Sbjct: 123 GAVPDDFAEQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGA 182

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +     R     +  +    +     +  + ++P  Q     V L         A  IA 
Sbjct: 183 TVHSAIRDKEPGEIEIWDMLTPEMVEEPDDWRVPVDQLAAPAVRL---------AEQIAA 233

Query: 377 ALRMSLDE------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            +R  LD              +    L+         +   L    + +  +  + L++ 
Sbjct: 234 TIRYWLDRGELIPGQNRKIAPRDIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSH 293

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
           +    L +L   + + +D +++A L+K PL  +     +                  +  
Sbjct: 294 IAIQDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASR 353

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                + +   ++  +N           +      A      +L  + P      ++   
Sbjct: 354 HDAELAQIHKLLSRWRNMADTMPVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQN 411

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               +           L+ +          L    +   + ++ +     G+ +      
Sbjct: 412 YALSAERAGLPGLQAFLETLEAASPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF----- 466

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
                  L+D  +      ++  L               L     +              
Sbjct: 467 -------LVDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLK 519

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           +R  +    L        +         GTR    T      +     S      +    
Sbjct: 520 NRAEEEYRRLLYVGMTRAEDRLIICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVA 579

Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
              +    +      +  +    +         +P       PR  + S    LI     
Sbjct: 580 ARRYRKTPRSFIEINEEDQAGATSLPPLPLDYRQPMKAEPGLPRPLAPSGASALIEADEE 639

Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                   +              RGT  H ++  L      K        + +I      
Sbjct: 640 PPLDLSSPVLEPGTGAPAF-ALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD--- 695

Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIH 897
                            ++      H          +F         +   + I      
Sbjct: 696 ------------WPDAERLKAWQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHA 743

Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945
           ++G  DRI + +S  V I DYKT   P K           QL+L    L+
Sbjct: 744 VSGQIDRISVDES-RVLIVDYKTNRPPPKTLEAVPFAYRAQLALYRELLR 792


>gi|121594697|ref|YP_986593.1| exonuclease-like protein [Acidovorax sp. JS42]
 gi|120606777|gb|ABM42517.1| RecB family exonuclease-like protein [Acidovorax sp. JS42]
          Length = 856

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 101/749 (13%), Positives = 201/749 (26%), Gaps = 77/749 (10%)

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                  +   + +  +     +         L             +      +      
Sbjct: 140 WGEAARALLPAAGDGGALRLEAAAARIALEWVLASRHVGDVLFESGVRAAVPLLVVVQGF 199

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV-ALIEADNEREEAISIAIALRMSLDEN 385
                            ++ +    +    + V  L    +  +EA   A  +   L + 
Sbjct: 200 QPDPLARTLAQHWAEAGLVVDLPQVMDGGKAGVPTLHAVPDAEDEAQRAAACVLQHLAQG 259

Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
           +   AL+  DR L RR+   L   G  +    G  LSTT  ++ L ++L A        A
Sbjct: 260 QAPVALVANDRALTRRISALLGGAGAAVHDENGWLLSTTHAAARLMAVLQACAWDATADA 319

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           +   +K               A  ALE    R     +     +   L      +     
Sbjct: 320 VLDWLK-------QSPAVDGAALRALEHWLRRAGARHWSGAATQLQALAERRPAEAALAD 372

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                R            +  +   +     +   +    G   +++        LQ+  
Sbjct: 373 QVQAWRAQLRAARPLAQWLQSLRVLLQDCGLWDGLQQDEAGARVLAEL--RLPEGLQDDL 430

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
            D                           G+  +    ++   +  +++    +P     
Sbjct: 431 QDMD-------------------------GAGARMALADFTRWVGEVLECARYRPAYVDD 465

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
           + + +L   +     F  L+L G +E             ++  +  L L T +       
Sbjct: 466 APVVVLPLPQLLARPFAALVLPGCDEKRLQAAPEPPGPWTQAQREGLGLPTRDLLAAAQR 525

Query: 686 HDFEMANGTRHL-IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
             +  A     + +  R   E   P + S  +Q L + G      + +            
Sbjct: 526 AAWRQALRIERVDLLWRVGDEGGEPLLPSPLVQALRLDGTGTDGADPR------------ 573

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
           +  +       RP P    +   +  S S    L + PY  +A R L+L          D
Sbjct: 574 VTRSVPVAPTARPLPVGA-QLPVQRLSSSAYSDLRHCPYRFFALRQLQLQEDDELDAGLD 632

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINH-------LMKQIIDSHFEKENLPPHIDIIWR 857
           + D GT  H ++    +   +  T +             +       +E         W 
Sbjct: 633 KRDFGTWLHAVLQHFHEALQDAPTGDAAARTALMDEAAARATRELGLQEGDFLPYASGWP 692

Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID-LLKSGF---- 912
            L         +HE       +        +       + L G  DR+D +   G     
Sbjct: 693 ALRAGYLEWLGKHEAAGACFRQ-----AELRARQPLGALELVGTLDRVDAVRPQGGGEPL 747

Query: 913 VDITDYKT-GDNPKKETAQKL-IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
             + DYKT  D   +   +    D QL+  AA L+                Y+ + ++ +
Sbjct: 748 ALVIDYKTESDALTRGRIKAGAEDTQLAFYAALLQD---------DTLRAAYVNVGERGE 798

Query: 971 IDCITNDKKKYSADELSEKSLKNLIEIVT 999
                 D   +  D L +    ++  I  
Sbjct: 799 TRLHEQDDVVHLRDLLLDGITHDMQRIAA 827


>gi|326443254|ref|ZP_08217988.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
            27064]
          Length = 1238

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/604 (11%), Positives = 145/604 (24%), Gaps = 68/604 (11%)

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             D      L+  PL      +          E  A  GN+      +L +  L       
Sbjct: 590  LDTGTALALLTSPLGGMDAADLRRLGRALRDEERA-AGNRVPPPSDELIARALAEPERLV 648

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
             +     +           A  L   +      L    T +++       + W       
Sbjct: 649  THDRTYAFG----------AQQLGGLLRHARELLERGGTAEDALWALWDGTGWPARLERA 698

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                         +L         ++      E  +          +I  + I  +T+  
Sbjct: 699  ALRGGAAGRNADRDLDAVCALFDTAA----RAEERTGGAGALNFLEEIDAQDIAADTLSA 754

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
            +  +   + ++    S+ L +  +++ G+ EG+WP    +   L         L      
Sbjct: 755  RRSRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSP 814

Query: 681  IGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
                A                L+ T      +     SR+L  L V           +R 
Sbjct: 815  GALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLAELGV--EPKDVTGRPRRP 872

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL----INDPYAVYARRIL 791
                    +L  TT  P               R  + ++ + L       P   +     
Sbjct: 873  LAVAALVAELRATTVDPDASPALREAAARRLARLAALTDEEGLPLVPAAHPDRWWGLHEP 932

Query: 792  KL----------------------------------DFIPHFKKDPDRTDRGTLFHNIIT 817
                                                  +            G + H ++ 
Sbjct: 933  THSHAPLRDRDHPVTLSGSALDQLAGDGCSLQWFLGREVKADAPATAAQGFGNVVH-VLA 991

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            + +          +       +      +                    FL      +  
Sbjct: 992  DEVASGRTPADLAVLMERLDSVWDGLAFDAPWKSQQEKEHAR--AALERFLRWHVMDRGG 1049

Query: 878  IEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLID 934
                    P  + +E+    + + G  DR++    G V + D+KTG   P      +   
Sbjct: 1050 RTTAATEHPFDVTLEAGEYAVRIRGSMDRVERDAQGRVYVVDFKTGKQAPTAREVDRH-- 1107

Query: 935  PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            PQL++   A++ G+   +D    A+                   +  +A       L +L
Sbjct: 1108 PQLAVYQLAVREGALDTLDGTGTADAPDGAEASDTGPGPGEGRPESGAAPVPGGAELVHL 1167

Query: 995  IEIV 998
             +  
Sbjct: 1168 RQAA 1171



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 87/773 (11%), Positives = 171/773 (22%), Gaps = 59/773 (7%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TLVE            A V +   +++A  ELR       G      P   +        
Sbjct: 41  TLVEAVAERVAAGADPARVLVLTFSRKAAVELRDRMALRLGG--ARGPQATTFHSFCYAL 98

Query: 89  FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
             A             +S  ++ + +  L+    +   D               +     
Sbjct: 99  VRAHQDADLFAEPLRLLSGPEQDVMVRELLTGQLDLEADGFDGHR---WPDELRACLTTR 155

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             A  +  ++            L           W  AA FL          L       
Sbjct: 156 GFADEVRAVLARSRELGLGPRSLARFAARTGRPDWRAAASFLAEYLDV----LDMQGVLD 211

Query: 207 PVG--YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                ++  L+   A          + +     + PA  RL++ +A    G  ++   D 
Sbjct: 212 YAELVHRAVLLAERAGPAPDFPYDTVFVDEYQDTDPAQVRLLTALAG--GGRTLVAFGDP 269

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +            +   +                 +  DV  L           
Sbjct: 270 DQSIYAFRGADVNGILDFPATFRHPDG--------------RPADVAVLTTSRRSGAALL 315

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
                       + +    +  ++     +    V          E  ++A  LR +  E
Sbjct: 316 GATRLLTRRMPLTRLPADKVRAHRELAATRPGGRVETYTFPTPSAELDNVADILRRAHLE 375

Query: 385 NKKKS----ALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFK 439
           +         L+ A       V+  LT  G+ ++   A +PL      + L + L AI  
Sbjct: 376 DGVPWHGMAVLVRAGARSIPAVRRALTAAGVPLETDGADVPLRHEPAVAPLLTALRAIAT 435

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY------DIMDLKSLVL 493
                     V  P            R     +     G+  +          D  ++V 
Sbjct: 436 AASTTPTGAAVPGPRHGTAPVPAPEDRTPVRSDTPPAHGDPATAAPAADSGPPDAAAVVR 495

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                      +    +  + +    A             +     +  +     + +D 
Sbjct: 496 TGTGASAAAGDLSGPVAGEAPDTPVPAPGGGPPGDIAADAVGGTSADAAAVVRTSAETDA 555

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS-------KIIETGSCIKANAIEWI 606
                             +             +               G    A+     
Sbjct: 556 AADGGPDRSGAGDGAGDGVSGPGARARAAVGRAWLDTGTALALLTSPLGGMDAADLRRLG 615

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             +         +        +        RL+  D     G  +       A+   L R
Sbjct: 616 RALRDEERAAGNRVPPPSDELIARALAEPERLVTHDRTYAFGAQQLGGLLRHARE-LLER 674

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
              ++  L       G  A     A                    A R L  +  L  T 
Sbjct: 675 GGTAEDALWALWDGTGWPARLERAALR-----------GGAAGRNADRDLDAVCALFDTA 723

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                +  G   L++  ++D           +   P   +  T   S+  +  
Sbjct: 724 ARAEERTGGAGALNFLEEIDAQDIAADTLSARRSRPDAVRLMTAHRSKGLEWR 776


>gi|313816227|gb|EFS53941.1| UvrD/REP helicase [Propionibacterium acnes HL059PA1]
 gi|315098848|gb|EFT70824.1| UvrD/REP helicase [Propionibacterium acnes HL059PA2]
          Length = 1072

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 108/1061 (10%), Positives = 264/1061 (24%), Gaps = 146/1061 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     T +A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     +S    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160

Query: 138  LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184
                    + LA  +A        +   + +W  +                  W      
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+        +S       D     + +  +     
Sbjct: 341  QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +       H+            E     +  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +         L +   +
Sbjct: 567  IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRGHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
               +   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            +GV+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711
             +      +  +                                     R   +    T 
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYAVLLADMLGTVWPDFGERPDDDIQAGTP 799

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               + + +      +   ++   GQ       + D  T     +R        A P   +
Sbjct: 800  WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S+I +L  +P A   R  L+        +       GT FH  +++ +         + 
Sbjct: 860  TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889
              + +       ++E++      +        +   L    EE   +    + V     M
Sbjct: 915  EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968

Query: 890  AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             I      + G  D +       G   + D+KT      +        QLS+   A    
Sbjct: 969  TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                ID  +V    +  +     I           A  L+ 
Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|254705105|ref|ZP_05166933.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str.
            686]
 gi|261755810|ref|ZP_05999519.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str.
            686]
 gi|261745563|gb|EEY33489.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str.
            686]
          Length = 1180

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 112/988 (11%), Positives = 245/988 (24%), Gaps = 103/988 (10%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
            +   +      L   L E         L LA + +   T R     R+   E   ++  +
Sbjct: 184  ADVLQAAGETGLQSLLDEAVGRRNGLQLYLAELGV--GTHRMEALHRAFGFEPDAREDDL 241

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLYP 132
            L  +  + +  ++     L +    +       +   LE A  +      L         
Sbjct: 242  LADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKSTG 301

Query: 133  ESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
            E      +  A    L     +  D      E   + L  L   +     L A   +   
Sbjct: 302  EPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDNL 358

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPATA 243
             + + +                 +   A        ++ +      I++  +  + P   
Sbjct: 359  LQRYHDLKCRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQW 418

Query: 244  RLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            +++                      V +         G            I+ +++N   
Sbjct: 419  QVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAEL 478

Query: 284  SNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                 S +  +     + + +D +  + E  + L   +     R     +  +    +  
Sbjct: 479  KFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTPE 538

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NKK 387
               +  + ++P  Q     V L         A  IA  +R  LD              + 
Sbjct: 539  MVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPRD 589

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
               L+         +   L    + +  +  + L++ +    L +L   + + +D +++A
Sbjct: 590  IMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSLA 649

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             L+K PL  +     +                  +       + +   ++  +N      
Sbjct: 650  ALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTMP 709

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                 +      A      +L  + P      ++       +           L+ +   
Sbjct: 710  VFEFYARVL--GADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEAA 767

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                   L    +   + ++ +     G+ +             L+D  +      ++  
Sbjct: 768  APEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAPK 815

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
            L               L     +              +R  +    L        +    
Sbjct: 816  LIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRLI 875

Query: 688  FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                 GTR    T      +     S      +       +    +      +  +    
Sbjct: 876  ICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGAT 935

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-RT 806
            +     +   +P       PR  + S    LI           L    +      P    
Sbjct: 936  SLPPLPHDYRQPMEAEPGLPRPLTPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFAL 993

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
             RGT  H ++  L      K        + +I                       ++   
Sbjct: 994  RRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKAW 1038

Query: 867  FLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
               H          +F         +   + I      ++G  DRI + +S  V I DYK
Sbjct: 1039 QSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDYK 1097

Query: 920  TGDNPKK--ETAQKLIDPQLSLEAAALK 945
            T   P K  E        QL+L    L+
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLR 1125


>gi|163844120|ref|YP_001628524.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445]
 gi|163674843|gb|ABY38954.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445]
          Length = 1180

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 112/988 (11%), Positives = 245/988 (24%), Gaps = 103/988 (10%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
            +   +      L   L E         L LA + +   T R     R+   E   ++  +
Sbjct: 184  ADVLQAAGETGLQSLLDEAVGRRNGLQLYLAELGV--GTHRMEALHRAFGFEPDAREDDL 241

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLYP 132
            L  +  + +  ++     L +    +       +   LE A  +      L         
Sbjct: 242  LADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKSTG 301

Query: 133  ESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
            E      +  A    L     +  D      E   + L  L   +     L A   +   
Sbjct: 302  EPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDNL 358

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPATA 243
             + + +                 +   A        ++ +      I++  +  + P   
Sbjct: 359  LQRYHDLKCRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQW 418

Query: 244  RLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            +++                      V +         G            I+ +++N   
Sbjct: 419  QVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAEL 478

Query: 284  SNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                 S +  +     + + +D +  + E  + L   +     R     +  +    +  
Sbjct: 479  KFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTPE 538

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NKK 387
               +  + ++P  Q     V L         A  IA  +R  LD              + 
Sbjct: 539  MVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPRD 589

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
               L+         +   L    + +  +  + L++ +    L +L   + + +D +++A
Sbjct: 590  IMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSLA 649

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             L+K PL  +     +                  +       + +   ++  +N      
Sbjct: 650  ALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTMP 709

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                 +      A      +L  + P      ++       +           L+ +   
Sbjct: 710  VFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEAA 767

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                   L    +   + ++ +     G+ +             L+D  +      ++  
Sbjct: 768  APEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAPK 815

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
            L               L     +              +R  +    L        +    
Sbjct: 816  LIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRLI 875

Query: 688  FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                 GTR    T      +     S      +       +    +      +  +    
Sbjct: 876  ICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGAT 935

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-RT 806
            +     +   +P       PR  + S    LI           L    +      P    
Sbjct: 936  SLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFAL 993

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
             RGT  H ++  L      K        + +I                       ++   
Sbjct: 994  RRGTAIHMLLEYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKAW 1038

Query: 867  FLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
               H          +F         +   + I      ++G  DRI + +S  V I DYK
Sbjct: 1039 QSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDYK 1097

Query: 920  TGDNPKK--ETAQKLIDPQLSLEAAALK 945
            T   P K  E        QL+L    L+
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLR 1125


>gi|300173051|ref|YP_003772217.1| ATP-dependent nuclease subunit B [Leuconostoc gasicomitatum LMG
            18811]
 gi|299887430|emb|CBL91398.1| ATP-dependent nuclease subunit B [Leuconostoc gasicomitatum LMG
            18811]
          Length = 1178

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 96/969 (9%), Positives = 252/969 (26%), Gaps = 142/969 (14%)

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL--KNEKYGMWWL 182
            DI++D   + P+   +   +       L   +  +       +DL  +         +  
Sbjct: 107  DILRDYAGQLPIFARMQSKS--GFISALVKQLVELRASHITPQDLLQILNDTSNDATFLH 164

Query: 183  LAA----DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238
                     L I +     ++ +   ++        M+     L           G  G 
Sbjct: 165  QTLGSKLRDLAIVADALDRKIGQEYITAQEVLPFFAMQLAGSSLKNVAF---YFDGFNGF 221

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
              A  ++++ +      +I L              + +        +      P Y+  +
Sbjct: 222  TSAEMQVITQLIAKYPVSIAL--------------LGQADRLGKQQDGDVFNKPMYTAQQ 267

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
            L+    I  + V+           +   +S++      +      + E +  N  K   +
Sbjct: 268  LIHTAQIFEQKVQIN------APKQLRHLSQTTKQVLLA---WESLGEYRAFNGDKDHVN 318

Query: 359  VALIEADNEREEAISIAIALRMSL----DENKKKSALITAD-RNLARRVKLELTRFGINI 413
            +    A+N   E   +A  +R  L    +   +   ++  D       +   +++F +  
Sbjct: 319  LQTFAAENTIVEIQEVARRVRQLLVSEPELRLRDILILARDLTPYTAHIPEVMSQFDLPY 378

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK-----YLSRAK 468
             +    P++      +L +LL        +  +  ++K  L +    +            
Sbjct: 379  FLDNDQPMANHPLVELLLNLLLPQKDRFQYQNVMAILKTSLLRPYLDDALVSETEFFDVM 438

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
               +              +L            +        +            +   IL
Sbjct: 439  GYFDNYLYANRPYETTWRNLDKPFE-LFTVVDSVDEDDATITSDDSIVNRRIETMRRFIL 497

Query: 529  QCITPLVTYKTNKNSTCGNLS-ISDWTK------LTVTCLQNVCLDEHRKLPNLWFEEEG 581
                 L        +     + +  W +        +     +             E+  
Sbjct: 498  SAFDDLQRQLDQAKTMRQAATNLVLWLEKYHVDSAILEQRDVLLAAGELTRSRQ-GEQVW 556

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            +        I+        +   + +++     G            L I      +  ++
Sbjct: 557  QLFIQTLDDIVAINGDQTFDLTIFKEVLNAGFSGAKFSGIPNNLDQLTISEAGIVQSNHY 616

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE------------KYIGQAAHDFE 689
              L   G      P  T     ++   +  +     E            + + +    F 
Sbjct: 617  KQLFFIGGTRTNLPAQTKTTALINDAERLIVQPALQEAGTTKYLQNTAQQQMAEENLLFY 676

Query: 690  MANGTRH--LIYTRS-LRENNIPTIASRWLQRL--------------------------- 719
             A  T    + ++   L      +  S + +RL                           
Sbjct: 677  GALATTTSGVTFSYPILDATGKISEISPFFKRLIDTFDITIKKISNVPSSSVDLLKHYIG 736

Query: 720  ---LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK--------------RPKPFPP 762
                 L         ++    +      +    K+   +              +P+    
Sbjct: 737  TPRATLSELVKIIPTQQATAAFKAVQNAISQQQKERLMRVLQAPNYRNTIQTLKPEFVQA 796

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            L  +    S S+++   N+P   + +  LKL        + +    GTL+H ++  ++++
Sbjct: 797  LFGEQLNVSISQLESYYNNPLGYFLQYGLKLKER--ATNELNVAQTGTLYHAVLEAVLQR 854

Query: 823  RINKNTPEIN---HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE---------- 869
             I +N    +     +  ++      + + P  +++  +   +    +L+          
Sbjct: 855  LIQENISLRDIKTSALMMLLQQELASQLMLPEYNLLQENGKMRAIRDYLQKVSETLLTNL 914

Query: 870  HEEKIQSSIEKIFVNIPAKMA----IESIGI-------HLTGFADRIDLLKSGFVD--IT 916
                  +      V           + ++          + G  DR D+  +  V   I 
Sbjct: 915  QRAARVNIARPSAVEKLFGFPDKNALPALKFSRGQINMQVRGKIDRFDIQDNTQVFGTII 974

Query: 917  DYKTGDNPKKE-TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
            DYK+         A   +  QL     A +  +   +    +   F+ ++  + ++    
Sbjct: 975  DYKSSGKQFDWGQAFDGLQMQLLTYWQAAQMNA-EALGVEAIGGAFFAQIAPQKRLISDF 1033

Query: 976  NDKKKYSAD 984
                    D
Sbjct: 1034 KGDVSALLD 1042


>gi|296111904|ref|YP_003622286.1| ATP-dependent nuclease, subunit B [Leuconostoc kimchii IMSNU 11154]
 gi|295833436|gb|ADG41317.1| ATP-dependent nuclease, subunit B [Leuconostoc kimchii IMSNU 11154]
          Length = 1178

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 118/1004 (11%), Positives = 267/1004 (26%), Gaps = 157/1004 (15%)

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPIS------PANAIWLAK---------NL 152
            ++  L RL       +PD   ++   + L + +S       A     A+          L
Sbjct: 73   QVYSLTRLAWALLKDMPDAQPNIIQNTGLFIMVSDILREYAAQLPVFARMQSKSGFISAL 132

Query: 153  ADIIDIIETEEKKWEDLHALKNEK------YGMWWLLAADFLKIASKYWTERLVELNASS 206
               +  +       +DL  + N++                 L I S   T ++     + 
Sbjct: 133  VKQLVELRASHISPQDLLQILNDESHDDTFLRQTLASKLRDLAIVSDALTRKIGTERITQ 192

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                     +  A  L              G   A  +++S +  H    I L G    +
Sbjct: 193  QEVLPFFATQLAATQLENVAF---YFDNFNGFTSAEMQVVSQILTHYPTTIALLG---DV 246

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +    +       +            A+ L +L  +      L   +         
Sbjct: 247  KKLGYQQAGDVFNKPMQT------------AQQLVYLTKQANQSVELIAATKPR------ 288

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
              +     +       ++ E +  + +    ++    A+N   E   IA  +R  L E  
Sbjct: 289  --QLSHTVNQVLSAWENLGEYRAFSGEVDKVELQAFAAENTVVEMQEIARRVRRLLVEQP 346

Query: 387  ----KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                +   ++  D       +   +++F +   +     +       ++ +LL       
Sbjct: 347  TLRLRDILILARDLTPYTAHIPEVMSQFDLPYFLDTDQKMVNHPLVELILNLLVPAKDRF 406

Query: 442  DFMAIATLVKHPLAKFG-----FPEKYLSRAKNALELVALRGNKNSYDIMDLKS--LVLD 494
             +  + T++K  L +        PE       +  +              +L+    +  
Sbjct: 407  QYQNVMTVLKTSLLRPYNQTSLVPEDEFFDVVSYFDNYLYANRPYEKTWRNLEKPFELFT 466

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLV----DHILQCITPLVTYKTNKNSTCGNLSI 550
             +    ++         ++    E     V    D +   +    T +    +    L  
Sbjct: 467  VVGQIDDDDATIVSDDAITNRRIETLRRFVLTAFDALQVALDQAKTTQLAATNLVTWLQN 526

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
                         + L           EE  + L+    +I+E       +   + D+++
Sbjct: 527  FHVVDAITEQRDALILAGELTRSRQ-GEEVWQLLTQTLDEIVEISGNEPFDLSAFKDVLS 585

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ- 669
                G            L I      +  ++  L   G      P        ++   + 
Sbjct: 586  TGFSGAKFSGIPNNLDQLTISEAGIVQNNHYKQLFFIGGTRSNLPAQAKTTALINDAERL 645

Query: 670  ------SDLNLKTAEKYIGQAA-----HDFEMANGT--RHLIYTRSL-RENNIPTIASRW 715
                   +  +    +   Q         F  A      +L  +  +   +   +  S +
Sbjct: 646  IVQPALKEAGVSKYLQNTAQQQMTEENLLFYGALAATTDNLTLSYPMLEASGKISEMSPF 705

Query: 716  LQRLLV-------------LGGTDFFDNLKKRGQCYLD---------------------- 740
             +RL+                G D         +  L                       
Sbjct: 706  FKRLIATFNVSVEKVASKPHNGADLLKRYIGTARATLSELVKILPTQRTTAAFKAIQNTI 765

Query: 741  -------WTRKLDYTTK--QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                    TR L            +P+    L       S S+++    +P   + +  L
Sbjct: 766  ADTQSDRLTRVLSAPNYKNTSQVLKPEFVHALFGDQLNVSISQLESYYRNPLGYFIQYGL 825

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN---HLMKQIIDSHFEKENL 848
            KL        + D    GTL+H ++  ++K  I +N    +     +  ++     +   
Sbjct: 826  KLKER--ATNELDVAQTGTLYHAVLEGVLKALIKENMSLRDITTPDLLILVQQKMTEIIQ 883

Query: 849  PPHIDIIW--------RHLFHKISHSFLEHEE--KIQSSIEKIFVNIPAKMA----IESI 894
             P   ++         R    ++S + L + +     +S +   V           +  +
Sbjct: 884  SPEYQLLQENGKMRATRDYLQRVSATLLMNLQRSARVNSAKPSHVEQLFGFPSQASLPPL 943

Query: 895  -------GIHLTGFADRIDLLKSGFVD--ITDYKTGDNPKKE-TAQKLIDPQLSLEAAAL 944
                    + + G  DR D+     V   I DYK+         A   +  QL     A 
Sbjct: 944  KFSRGKVNVQVRGKIDRFDIQDQAHVFGTIIDYKSSGKQFDWGQAFDGLQMQLLTYWQAA 1003

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
            +  +   +    +   F+ ++  + ++            D+L  
Sbjct: 1004 QMNA-QLLGVEAIGGAFFAQIAPEKQLIANFKG----DIDDLLA 1042


>gi|254707379|ref|ZP_05169207.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            M163/99/10]
 gi|261314862|ref|ZP_05954059.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            M163/99/10]
 gi|261303888|gb|EEY07385.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            M163/99/10]
          Length = 1180

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%)

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131
            +L  +  + +  ++     L +    +       +   LE A  +      L        
Sbjct: 241  LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300

Query: 132  PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E      +  A    L     +  D      E   + L  L   +     L A   +  
Sbjct: 301  GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
              + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358  LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243  ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +++                      V +         G            I+ +++N  
Sbjct: 418  WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283  SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                  S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478  LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
                +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538  EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589  DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A L+K PL  +     +                  +       + +   ++  +N     
Sbjct: 649  AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  +      A      +L  + P      ++       +           L+ +  
Sbjct: 709  PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                    L    +   + ++ +     G+ +             L+D  +      ++ 
Sbjct: 767  AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L               L     +              +R  +    L        +   
Sbjct: 815  KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                  GTR    T      +     S      +       +    +      +  +   
Sbjct: 875  IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805
             +     +   +P       PR  + S    LI           L    +      P   
Sbjct: 935  TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RGT  H ++  L      K        + +I                       ++  
Sbjct: 993  LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037

Query: 866  SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                H          +F         +   + I      ++G  DRI + +S  V I DY
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096

Query: 919  KTGDNPKK--ETAQKLIDPQLSLEAAALK 945
            KT   P K  E        QL+L    L+
Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125


>gi|260654705|ref|ZP_05860195.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1]
 gi|260630721|gb|EEX48915.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1]
          Length = 943

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 106/756 (14%), Positives = 215/756 (28%), Gaps = 84/756 (11%)

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
                    + SD+    +             DV +++A++ R E  +IA +L +      
Sbjct: 212  PDDGTSHAEASDLIAQLLPGEAPCPSPGGPVDVRILQAEDCRGEYETIARSLILWEATGH 271

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                +              L  +                  + L  ++            
Sbjct: 272  DGLKI-----GHPWPGWEALALWVPV-----------NREGTALE-VMRRYGVPCRRART 314

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              +   P  +          A +            ++  M    L     + +       
Sbjct: 315  LKITDTPFWRLSQ---MARAAASQNWDAFSTSELMAHPAMASGPLPDKSPSGRDAWRDAL 371

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              +SR + +D       +       T L                S+ +  T      +  
Sbjct: 372  PEKSRDAFDDACAFAQEIQSGGTPETLLAALLRLGERRLLTF-FSNASSGTAGTDGTLDG 430

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                    L              + +++    K +  +  + +T   DG +++P+     
Sbjct: 431  QIAEYNGALDELRRKLLAIRETLRDLKSAGSRKLDGGDAWEYLTAWADGSSIRPQQPLGD 490

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----------NLKT 676
             L +         +   L + GLN  VWP + A+ P LS   +  +          +L  
Sbjct: 491  ALELWSGSLPVFFSRPYLFVSGLNASVWPGSLAETPLLSDADRQTISGSPDAENAGHLPL 550

Query: 677  AEKYIGQAAHDFEMANGT--RHLIYTRSLRENNI-PTIASRWLQRLLVLGGTDFFDNLKK 733
              +   Q    F     +  R  I + +  +    P   + +L      G          
Sbjct: 551  LSERRSQQEVLFRRLIASAGRLTILSWTTTDEKSRPLEPTPFLPSAYSDGWIASDPPTVS 610

Query: 734  RGQCYLDWTR--------KLDYTTKQPHYKRPKPFP---PLEAQPRTYSFSEIKQLINDP 782
            RG   L   R        ++    +   + + + FP   P    P     S I    + P
Sbjct: 611  RGLDELLVPRDQPLIGGVEVRSPLEFAPWPKDRVFPSPLPGAKVPSALPMSAIDAFADCP 670

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
            Y  Y + +L+L      +   DR   GT  H +   +   +       I +L  + +D  
Sbjct: 671  YRFYVQNVLRLAPQET-RPAYDRLLVGTATHKLWEMVWSAKNAGEKESIQNLSARFLDEA 729

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEH--------EEKIQSSIEKIFVNIPAKMAIESI 894
                +  P +          +  S +          +E++     K+ +  P  + ++  
Sbjct: 730  LLGPSGYPELGTPQLARQFALLKSQIRRCAALQDKIDERLAPHRVKVMIETPLSLQLDHA 789

Query: 895  GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
                 G ADRID+L  G   + DYK G     ++ +     QL L A A +         
Sbjct: 790  FF--RGRADRIDVLDDGSFLVWDYKLG-----KSEKYAKSFQLPLYALACEKS-----TG 837

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK-----------------NLIEI 997
            ++ A   ++ L+       +   K++    +    +L                   L E+
Sbjct: 838  KRPAGWGFLGLRDGGCQASLVLPKEQSETCQAVAAALAEQTDCKTIPPAAEGPLPELAEL 897

Query: 998  VTLLQNGEQPFISHLRL-SEKSNIQSEYDHLARVAE 1032
            ++ L +       +    S+ +     Y  L R  E
Sbjct: 898  LSSLDSCTAAGRWNPNWDSKDACRNCPYKELCRKEE 933


>gi|254713494|ref|ZP_05175305.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1]
 gi|254716150|ref|ZP_05177961.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1]
 gi|261217923|ref|ZP_05932204.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1]
 gi|261321227|ref|ZP_05960424.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1]
 gi|260923012|gb|EEX89580.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1]
 gi|261293917|gb|EEX97413.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1]
          Length = 1180

 Score =  140 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%)

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131
            +L  +  + +  ++     L +    +       +   LE A  +      L        
Sbjct: 241  LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300

Query: 132  PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E      +  A    L     +  D      E   + L  L   +     L A   +  
Sbjct: 301  GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
              + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358  LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243  ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +++                      V +         G            I+ +++N  
Sbjct: 418  WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283  SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                  S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478  LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
                +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538  EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589  DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A L+K PL  +     +                  +       + +   ++  +N     
Sbjct: 649  AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  +      A      +L  + P      ++       +           L+ +  
Sbjct: 709  PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                    L    +   + ++ +     G+ +             L+D  +      ++ 
Sbjct: 767  AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L               L     +              +R  +    L        +   
Sbjct: 815  KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                  GTR    T      +     S      +       +    +      +  +   
Sbjct: 875  IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805
             +     +   +P       PR  + S    LI           L    +      P   
Sbjct: 935  TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RGT  H ++  L      K        + +I                       ++  
Sbjct: 993  LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037

Query: 866  SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                H          +F         +   + I      ++G  DRI + +S  V I DY
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096

Query: 919  KTGDNPKK--ETAQKLIDPQLSLEAAALK 945
            KT   P K  E        QL+L    L+
Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125


>gi|225853531|ref|YP_002733764.1| double-strand break repair helicase AddA [Brucella melitensis ATCC
            23457]
 gi|254700733|ref|ZP_05162561.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str.
            513]
 gi|254709079|ref|ZP_05170890.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            B2/94]
 gi|256030604|ref|ZP_05444218.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            M292/94/1]
 gi|256045706|ref|ZP_05448584.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1
            str. Rev.1]
 gi|256262985|ref|ZP_05465517.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563008|ref|ZP_05833494.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M]
 gi|261316580|ref|ZP_05955777.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            B2/94]
 gi|261751245|ref|ZP_05994954.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str.
            513]
 gi|265987652|ref|ZP_06100209.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            M292/94/1]
 gi|265992127|ref|ZP_06104684.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1
            str. Rev.1]
 gi|225641896|gb|ACO01810.1| double-strand break repair helicase AddA [Brucella melitensis ATCC
            23457]
 gi|260153024|gb|EEW88116.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M]
 gi|261295803|gb|EEX99299.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            B2/94]
 gi|261740998|gb|EEY28924.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str.
            513]
 gi|263003193|gb|EEZ15486.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1
            str. Rev.1]
 gi|263092858|gb|EEZ17033.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|264659849|gb|EEZ30110.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            M292/94/1]
 gi|326410100|gb|ADZ67165.1| double-strand break repair helicase AddA [Brucella melitensis M28]
 gi|326539817|gb|ADZ88032.1| double-strand break repair helicase AddA [Brucella melitensis M5-90]
          Length = 1180

 Score =  140 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%)

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131
            +L  +  + +  ++     L +    +       +   LE A  +      L        
Sbjct: 241  LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300

Query: 132  PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E      +  A    L     +  D      E   + L  L   +     L A   +  
Sbjct: 301  GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
              + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358  LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243  ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +++                      V +         G            I+ +++N  
Sbjct: 418  WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283  SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                  S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478  LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
                +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538  EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589  DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A L+K PL  +     +                  +       + +   ++  +N     
Sbjct: 649  AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  +      A      +L  + P      ++       +           L+ +  
Sbjct: 709  PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                    L    +   + ++ +     G+ +             L+D  +      ++ 
Sbjct: 767  AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L               L     +              +R  +    L        +   
Sbjct: 815  KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                  GTR    T      +     S      +       +    +      +  +   
Sbjct: 875  IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805
             +     +   +P       PR  + S    LI           L    +      P   
Sbjct: 935  TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RGT  H ++  L      K        + +I                       ++  
Sbjct: 993  LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037

Query: 866  SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                H          +F         +   + I      ++G  DRI + +S  V I DY
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096

Query: 919  KTGDNPKK--ETAQKLIDPQLSLEAAALK 945
            KT   P K  E        QL+L    L+
Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125


>gi|308061709|gb|ADO03597.1| hypothetical protein HPCU_02120 [Helicobacter pylori Cuz20]
          Length = 778

 Score =  140 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/389 (15%), Positives = 130/389 (33%), Gaps = 50/389 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  L L T         H +      ++ +  +    E +     S  L  L
Sbjct: 437 DLFLNSALRKSLKLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +                        ++S S +   +
Sbjct: 494 DLHIEPIKDAYTLFAPTPLKDYQEEEIQAAIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +     +  G+L H ++ E  +   +KN   +   + Q++
Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---SNSAIGSLLHELLKEAYE--KDKNPYALEERLIQLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    K N+ P   +       KI  +F   E++   + I+ + +    +  I+  G+  
Sbjct: 595 E---TKGNITPKERLDTLIALKKI-QAFYVKEKERFNAKIKILDLEKSFETTIQ--GVAF 648

Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID      + + DYK               G     E AQ   D Q+++ A AL
Sbjct: 649 KGRIDRIDKTADNEIILLDYKFKSDLKLDNMSEKQRGSLSPIEIAQISADYQMAIYAFAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
           K   +           F+  L++   ++ 
Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEE 732


>gi|148560369|ref|YP_001259904.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840]
 gi|148371626|gb|ABQ61605.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840]
          Length = 1180

 Score =  140 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%)

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131
            +L  +  + +  ++     L +    +       +   LE A  +      L        
Sbjct: 241  LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300

Query: 132  PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E      +  A    L     +  D      E   + L  L   +     L A   +  
Sbjct: 301  GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
              + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358  LLQRYHDLKRRRGFLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243  ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +++                      V +         G            I+ +++N  
Sbjct: 418  WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283  SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                  S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478  LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
                +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538  EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589  DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A L+K PL  +     +                  +       + +   ++  +N     
Sbjct: 649  AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  +      A      +L  + P      ++       +           L+ +  
Sbjct: 709  PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                    L    +   + ++ +     G+ +             L+D  +      ++ 
Sbjct: 767  AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L               L     +              +R  +    L        +   
Sbjct: 815  KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                  GTR    T      +     S      +       +    +      +  +   
Sbjct: 875  IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805
             +     +   +P       PR  + S    LI           L    +      P   
Sbjct: 935  TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RGT  H ++  L      K        + +I                       ++  
Sbjct: 993  LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037

Query: 866  SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                H          +F         +   + I      ++G  DRI + +S  V I DY
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096

Query: 919  KTGDNPKK--ETAQKLIDPQLSLEAAALK 945
            KT   P K  E        QL+L    L+
Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125


>gi|15611404|ref|NP_223055.1| hypothetical protein jhp0336 [Helicobacter pylori J99]
 gi|4154868|gb|AAD05920.1| putative [Helicobacter pylori J99]
          Length = 778

 Score =  140 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/400 (14%), Positives = 130/400 (32%), Gaps = 56/400 (14%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKVVIADFNETCVPNLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E      AS  L  L
Sbjct: 437 DLFLNSALRQSLNLPTLLDKKNLQKHYYYQLFKNSKEVALSYIESETLK---ASNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  ++  +                        ++S S +   +
Sbjct: 494 DLHTEPIKDAYTLFETSPIKEYQEEEIKAAIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +     +  G+L H ++ E  +   +KN   +   +  + 
Sbjct: 540 TCKRRFYYHYIKRFKETPKDE---SNSAVGSLIHELLKEAYE--KDKNPHALEERLIWLS 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    +EN+ P   +       KI  +F + E +   + I  + +    +  I+  G+  
Sbjct: 595 E---TRENVTPKERLDTLVALKKI-QAFYKKERERFNAEITILDLEKSFETIIQ--GVIF 648

Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDP----------QLSLEA 941
            G  DRID      + + DYK              E  +K + P          Q+++  
Sbjct: 649 KGRIDRIDKTADNEIILLDYK---FKSDLKLDSMSEKQRKGLSPIEIAQISTDYQMAIYV 705

Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
            ALK   +      +    F+  L++   ++      +  
Sbjct: 706 RALKNLGYK-----EPIKAFFYDLRKGELLEEDELTLQAK 740


>gi|314978138|gb|EFT22232.1| UvrD/REP helicase [Propionibacterium acnes HL072PA2]
 gi|315088601|gb|EFT60577.1| UvrD/REP helicase [Propionibacterium acnes HL072PA1]
          Length = 1072

 Score =  140 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 108/1061 (10%), Positives = 264/1061 (24%), Gaps = 146/1061 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     T +A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     +S    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160

Query: 138  LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184
                    + LA  +A        +   + +W  +                  W      
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+        +S       D     + +  +     
Sbjct: 341  QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +       H+            E     +  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +         L +   +
Sbjct: 567  IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRGHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
               +   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            +GV+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711
             +      +  +                                     R   +    T 
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               + + +      +   ++   GQ       + D  T     +R        A P   +
Sbjct: 800  WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             S+I +L  +P A   R  L+        +       GT FH  +++ +         + 
Sbjct: 860  TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889
              + +       ++E++      +        +   L    EE   +    + V     M
Sbjct: 915  EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968

Query: 890  AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             I      + G  D +       G   + D+KT      +        QLS+   A    
Sbjct: 969  TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                ID  +V    +  +     I           A  L+ 
Sbjct: 1021 --RGIDPSRVW-AVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|23502951|ref|NP_699078.1| UvrD/Rep family helicase [Brucella suis 1330]
 gi|161620015|ref|YP_001593902.1| double-strand break repair helicase AddA [Brucella canis ATCC 23365]
 gi|260567425|ref|ZP_05837895.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40]
 gi|23348986|gb|AAN30993.1| helicase, UvrD/Rep family [Brucella suis 1330]
 gi|161336826|gb|ABX63131.1| double-strand break repair helicase AddA [Brucella canis ATCC 23365]
 gi|260156943|gb|EEW92023.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40]
          Length = 1180

 Score =  140 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 112/988 (11%), Positives = 245/988 (24%), Gaps = 103/988 (10%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
            +   +      L   L E         L LA + +   T R     R+   E   ++  +
Sbjct: 184  ADVLQAAGETGLQSLLDEAVGRRNGLQLYLAELGV--GTHRMEALHRAFGFEPDAREDDL 241

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLYP 132
            L  +  + +  ++     L +    +       +   LE A  +      L         
Sbjct: 242  LADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKSTG 301

Query: 133  ESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
            E      +  A    L     +  D      E   + L  L   +     L A   +   
Sbjct: 302  EPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDNL 358

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPATA 243
             + + +                 +   A        ++ +      I++  +  + P   
Sbjct: 359  LQRYHDLKCRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQW 418

Query: 244  RLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            +++                      V +         G            I+ +++N   
Sbjct: 419  QVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAEL 478

Query: 284  SNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                 S +  +     + + +D +  + E  + L   +     R     +  +    +  
Sbjct: 479  KFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTPE 538

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NKK 387
               +  + ++P  Q     V L         A  IA  +R  LD              + 
Sbjct: 539  MVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPRD 589

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
               L+         +   L    + +  +  + L++ +    L +L   + + +D +++A
Sbjct: 590  IMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSLA 649

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             L+K PL  +     +                  +       + +   ++  +N      
Sbjct: 650  ALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTMP 709

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                 +      A      +L  + P      ++       +           L+ +   
Sbjct: 710  VFEFYARVL--GADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEAA 767

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                   L    +   + ++ +     G+ +             L+D  +      ++  
Sbjct: 768  APEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAPK 815

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
            L               L     +              +R  +    L        +    
Sbjct: 816  LIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRLI 875

Query: 688  FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                 GTR    T      +     S      +       +    +      +  +    
Sbjct: 876  ICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGAT 935

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-RT 806
            +     +   +P       PR  + S    LI           L    +      P    
Sbjct: 936  SLPPLPHDYRQPMEAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFAL 993

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
             RGT  H ++  L      K        + +I                       ++   
Sbjct: 994  RRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKAW 1038

Query: 867  FLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
               H          +F         +   + I      ++G  DRI + +S  V I DYK
Sbjct: 1039 QSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDYK 1097

Query: 920  TGDNPKK--ETAQKLIDPQLSLEAAALK 945
            T   P K  E        QL+L    L+
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLR 1125


>gi|306843520|ref|ZP_07476121.1| double-strand break repair helicase AddA [Brucella sp. BO1]
 gi|306276211|gb|EFM57911.1| double-strand break repair helicase AddA [Brucella sp. BO1]
          Length = 1180

 Score =  140 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 99/928 (10%), Positives = 225/928 (24%), Gaps = 99/928 (10%)

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131
            +L  +  + +  ++     L +    +       +   LE A  +      L        
Sbjct: 241  LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E      +  A    L     +  D      E   + L  L   +     L A   +  
Sbjct: 301  GEPKSGSYVCSAAVKKLLPEFEEEFDAAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
              + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358  LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243  ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +++                      V +         G            I+ +++N  
Sbjct: 418  WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283  SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                  S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478  LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
                +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538  EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589  DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A L+K PL  +     +                  +       + +   ++  +N     
Sbjct: 649  AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  +      A      +L  + P      ++       +           L+ +  
Sbjct: 709  PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAECAGLPGLQAFLETLEA 766

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                    L    +   + ++ +     G+ +             L+D  +      ++ 
Sbjct: 767  ASPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L               L     +              +R  +    L        +   
Sbjct: 815  KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                  GTR    T      +     S      +       +    +      +  +   
Sbjct: 875  IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
             +     +   +P       PR  + S    LI             +             
Sbjct: 935  TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDLSSPVLEPGTGAPAF-AL 993

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
             RGT  H ++  L      K        + +I                       ++   
Sbjct: 994  RRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKAW 1038

Query: 867  FLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
               H          +F         +   + I      ++G  DRI + +S  V I DYK
Sbjct: 1039 QSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGHDHAVSGQIDRISVDES-RVLIVDYK 1097

Query: 920  TGDNPKKETAQKLID--PQLSLEAAALK 945
            T   P K           QL+L    L+
Sbjct: 1098 TNRPPPKTLEAVPFAYRAQLALYRELLR 1125


>gi|256370501|ref|YP_003108012.1| double-strand break repair helicase AddA [Brucella microti CCM 4915]
 gi|256000664|gb|ACU49063.1| double-strand break repair helicase AddA [Brucella microti CCM 4915]
          Length = 1180

 Score =  140 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%)

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131
            +L  +  + +  ++     L +    +       +   LE A  +      L        
Sbjct: 241  LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300

Query: 132  PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E      +  A    L     +  D      E   + L  L   +     L A   +  
Sbjct: 301  GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
              + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358  LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243  ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +++                      V +         G            I+ +++N  
Sbjct: 418  WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283  SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                  S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478  LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
                +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538  EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589  DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A L+K PL  +     +                  +       + +   ++  +N     
Sbjct: 649  AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  +      A      +L  + P      ++       +           L+ +  
Sbjct: 709  PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                    L    +   + ++ +     G+ +             L+D  +      ++ 
Sbjct: 767  AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L               L     +              +R  +    L        +   
Sbjct: 815  KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                  GTR    T      +     S      +       +    +      +  +   
Sbjct: 875  IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805
             +     +   +P       PR  + S    LI           L    +      P   
Sbjct: 935  TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RGT  H ++  L      K        + +I                       ++  
Sbjct: 993  LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037

Query: 866  SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                H          +F         +   + I      ++G  DRI + +S  V I DY
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096

Query: 919  KTGDNPKK--ETAQKLIDPQLSLEAAALK 945
            KT   P K  E        QL+L    L+
Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125


>gi|297379579|gb|ADI34466.1| Hypothetical protein HPV225_0378 [Helicobacter pylori v225d]
          Length = 778

 Score =  140 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/389 (16%), Positives = 134/389 (34%), Gaps = 50/389 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +     S  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +    T                   ++S S +   +
Sbjct: 494 DLHIEPIKDAYTLFAPTPLKDYQEEEIQATIPKD--------------FSFSVSSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +   + +  G+L H ++ E  +   +KN   +   + Q++
Sbjct: 540 TCRRRFYYHYIKRFKESPKDE---NNSAVGSLLHELLKEAYE--KDKNPYTLEERLIQLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    + N+ P   +       KI  +F   E++   + I+ + +    +  I+  G+  
Sbjct: 595 E---TRGNITPKERLDTLVALKKI-QAFYVKEKERFSAKIKILDLEKSFETTIQ--GVAF 648

Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID      V + DYK               G     E AQ   D Q+++ A AL
Sbjct: 649 KGRIDRIDKTADNEVILLDYKFKSDLKLDNMSEKQRGGLSPIEIAQISADYQMAIYAFAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
           K   +      +    F+  L++   ++ 
Sbjct: 709 KNLGYK-----EPIKAFFYDLRKGKLLEE 732


>gi|306837652|ref|ZP_07470521.1| double-strand break repair helicase AddA [Brucella sp. NF 2653]
 gi|306407210|gb|EFM63420.1| double-strand break repair helicase AddA [Brucella sp. NF 2653]
          Length = 1180

 Score =  140 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 98/928 (10%), Positives = 224/928 (24%), Gaps = 99/928 (10%)

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131
            +L  +  + +  ++     L +    +       +   LE A  +      L        
Sbjct: 241  LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E      +  A    L     +  D      +   + L  L   +     L A   +  
Sbjct: 301  GEPKSGSYVCSAAVKKLLPEFEEEFDAAAARVKMGLDRLKEL---RLVRLNLAALALIDN 357

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
              + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358  LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243  ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +++                      V +         G            I+ +++N  
Sbjct: 418  WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283  SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                  S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478  LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
                +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538  EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGELIPGQNRKIAPR 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589  DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A L+K PL  +     +                  +       + +   ++  +N     
Sbjct: 649  AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  +      A      +L  + P      ++       +           L+ +  
Sbjct: 709  PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                    L    +   + ++ +     G+ +             L+D  +      ++ 
Sbjct: 767  ASPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L               L     +              +R  +    L        +   
Sbjct: 815  KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                  GTR    T      +     S      +       +    +      +  +   
Sbjct: 875  IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
             +         +P       PR  + S    LI             +             
Sbjct: 935  TSLPPLPLDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDLSSPVLEPGTGAPAF-AL 993

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
             RGT  H ++  L      K        + +I                       ++   
Sbjct: 994  RRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKAW 1038

Query: 867  FLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
               H          +F         +   + I      ++G  DRI + +S  V I DYK
Sbjct: 1039 QSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDYK 1097

Query: 920  TGDNPKKETAQKLID--PQLSLEAAALK 945
            T   P K           QL+L    L+
Sbjct: 1098 TNRPPPKTLEAVPFAYRAQLALYRELLR 1125


>gi|325675756|ref|ZP_08155440.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707]
 gi|325553727|gb|EGD23405.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707]
          Length = 1125

 Score =  140 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 114/1114 (10%), Positives = 277/1114 (24%), Gaps = 175/1114 (15%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGD 83
            +   +V       ++P     V     T++A Q+L +   +       S ++  +   G 
Sbjct: 53   MAARVVWLVANGLVDPE---QVLGLTFTRKAAQQLTARIRKRLAKLAGSALVRDLDPSGS 109

Query: 84   VVEEKFTADL------------LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            +      ++             L  + L  P+     LL    L  +    +     DL 
Sbjct: 110  LRSRILASEPEVSTYHAYAGRLLSEHGLLLPIEPSATLLSETELWQLAYRVVSAWDDDLD 169

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL------AA 185
             +   +      + + L+  LA+ +       +   +L  L +                 
Sbjct: 170  TDRNPASITE--SVLALSGQLAEHLVEPADLREAHTELDKLIHTLPAGPKQRGGPSKTLL 227

Query: 186  DFLKI---------ASKYWTERLVELNASSPVGYQIALMR-----AEAEHLMKGTKGPII 231
            D L++           +   + L    A           R      E     +     ++
Sbjct: 228  DLLEVQHQRLDLLPLVQRLADTLRREGALDFGSQMSLAARVASEHPEVGRSERARFRVVL 287

Query: 232  IAGSTGSIPATARLMSTVANHPN--GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            +     +  A   L+S++       G  +    D       W   +  +    +++   +
Sbjct: 288  LDEYQDTGHAQRVLLSSLFGGGEDAGLALTAVGDPMQSIYGWRGASAANLPRFATDFPLA 347

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                    +LL       E ++    +S  +  R + +SK                    
Sbjct: 348  DGTPAPKLELLTSWRNPPEALELANMISEPLRDRGVEVSKLR------------------ 389

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK------SALITADRNLARRVK 403
                    DV L   D    E   +A  +    +  +        +A++      A  + 
Sbjct: 390  ARPAAVPGDVRLALLDTVETERAWVADRIAEQYEAARVDGAKPPTAAVLVRRNADAAPIA 449

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
             EL   G+ +++     L  T   + + ++L  +       A   ++    A++      
Sbjct: 450  EELRARGLAVEVVGLGGLLHTPEVADVVAMLRLVADPMAGSAAVRVLTG--ARWQIGAAD 507

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
            +         + +R +  +   +   + + D + +              +  D   A   
Sbjct: 508  IRALWKRAGELGIRSDHGATGAVTDAAALDDALGSALPGEQSEQAGLADALADPGPAHRY 567

Query: 524  VDHILQCITPLVTYKTNKNSTCG--NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             +     I  +     +     G     +    +  +           +        E  
Sbjct: 568  SEAGYVRICAVAAELASLRERLGQPLTELVAEVERVIGIGIEAQARTRQSEVGGAGREHL 627

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
               + + S      S      + ++     + +G            + +L    ++ L +
Sbjct: 628  DAFADVVSGYANRTSATLTGLLSFLAAAEHVENGLAPGEVEVAPDRVQVLTVHSAKGLEW 687

Query: 642  DTLILGGLNEGVWPKNTAKNPFLS------------------------------------ 665
            + + +  L  GV+P + A   +L                                     
Sbjct: 688  EVVAVPHLTAGVFPSSQASATWLGSVAELPPTLRGDRAYPGESADGVPVLDLENLYHRKD 747

Query: 666  -RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT----RSLRENNIPTIASRWLQRLL 720
                        + + + +    F +A                     P   S +L  L 
Sbjct: 748  LEDAIKSHKDALSTRRLDEDRRLFYVALTRTERALFVSGHHWAESGADPKGPSPFLLELE 807

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
             L     ++  +                       R   +P      R        +L+ 
Sbjct: 808  ELV--STWEGERLGAIDVWAPAPDDGAENPLTATPRSALWPRDPLGRRRADVERGAELVR 865

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM----- 835
                  A   L          D D  +       ++ E  ++       E+   +     
Sbjct: 866  G-----ALAGLGKAAPEPEAADGDPDNWAADVDALLAERRERGHGGTDVEMPAQLSVSQL 920

Query: 836  ------KQIIDSHFEKENLPP--------------------HIDIIWRHLFHKISHSFLE 869
                     + +   +    P                       ++        + + + 
Sbjct: 921  VDLAADPDALAARLRRPLPFPPNPLARRGTAFHAWVEQRFGATRLLDFDELPGAADTGVG 980

Query: 870  HEEKI-----------QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
             E ++            +    + V +P + ++      L G  D +     G   + D+
Sbjct: 981  TETELALLQDAFLRSPWADRSPVEVEVPFETSVAGT--VLRGRIDAVFADADGGWTVIDW 1038

Query: 919  KTGDNPKKETAQKLIDPQLSLEA-----AALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
            KTG  P     ++ +  QL+              S       +        L +      
Sbjct: 1039 KTGAEPSAAN-ERAVVMQLAAYRIAWAELMAARQSRLTGRPVEP------PLDKVRAAFH 1091

Query: 974  ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
                 +  + ++L +     L  ++T     E P
Sbjct: 1092 YVRTGRTIAPEDLPDA--DRLARLITTAGAEETP 1123


>gi|315103757|gb|EFT75733.1| UvrD/REP helicase [Propionibacterium acnes HL050PA2]
          Length = 1071

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 106/1059 (10%), Positives = 255/1059 (24%), Gaps = 145/1059 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     TK+A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTKKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     ++    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGINTGAHLITAARAYQLAAEVIMGLNKAPLAATHMG 160

Query: 138  LPISPANAIWLAKN----------LADIIDIIETEEKKWEDLHALKNEKYGMWW---LLA 184
                    + LA            +                            W   +  
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLDAPTKRGGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+       ++S       D     + +  I     
Sbjct: 341  QVLSLATNRRCADQIINAANVASEELRQTLSSAAESDDHDPAGDRAEVAVGQPLIAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRLLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +       H+            E     V  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDPDDVEIHLSDAVMEGRPGGHERLQCAVKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +    +    L +   +
Sbjct: 567  IVEVDAHQGDSPDDLVLR-----IEAITGLIDDIAAD--DPHRSAARRDHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +  +   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  VRRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            +GV+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYTRSLRENNI----------------------------------PTIA 712
             +      +  +     +                                          
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDNVIQAGTP 799

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
                  +      +   ++   GQ         D        +R        A P   + 
Sbjct: 800  WPVFADVGHGLIDNASRSVDDPGQADRVRVWWTDADALLKDARRHIDLQDEVALPPRLTT 859

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            S+I +L  +P A   R  L+        +       GT FH  +++ +         +  
Sbjct: 860  SQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDAE 914

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKMA 890
             + +       ++EN                +   L    EE   +    + V     M 
Sbjct: 915  EVAE------LDEENTTQEAVAAEPSGAESRALRSLCQAFEESRWAGATVLAVEKSFVMT 968

Query: 891  IESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
            I      + G  D +       G   + D+KT      +        QLS+   A     
Sbjct: 969  IGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA- 1019

Query: 949  FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
               ID  +V    +  +     I           A  L+
Sbjct: 1020 -RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILT 1056


>gi|326334225|ref|ZP_08200448.1| helicase, UvrD/Rep family [Nocardioidaceae bacterium Broad-1]
 gi|325948016|gb|EGD40133.1| helicase, UvrD/Rep family [Nocardioidaceae bacterium Broad-1]
          Length = 854

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 99/816 (12%), Positives = 214/816 (26%), Gaps = 91/816 (11%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
           P +     ++ A+++       R D         +     +++A ++LR         ++
Sbjct: 40  PGTGKTTTLVEAVVDRIENRGVRPD--------QLLALTFSRKAAEQLRDRVTARL-GRT 90

Query: 73  TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
               +  +                    P       LL      ++ +  L D  + +  
Sbjct: 91  LSGAVSSTFHSFAYGLVRRYAPAELYAAPLT-----LLSAPEADVVLQELLADNPESVRW 145

Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
                + +        A+ +  +I          + L AL  E+    ++ A  FL+   
Sbjct: 146 PERFRMAVGTR---GFAREVQTVIARARERGLDPDQLVALGREEGIEEFVAAGWFLEQYL 202

Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
                +         +   I   R  AE   +     + +     + P+   L+  +A  
Sbjct: 203 DVLGAQSAIDYPDLIMRGVIEAERHAAEL--RAEFACVFVDEYQDTDPSQVALLQALAGD 260

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
               IV+   D       +            S               +  L   R    R
Sbjct: 261 GRDLIVV--GDPDQSIYGFRGADVNGILDFPSQFLTRE----RRHAPVVALGTTRRFGSR 314

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
           L   S  +     V          +              +        ++  D +R E  
Sbjct: 315 LLRASRSIAAGISVRGSIPASAYDTFRN--------PHPLASDPGRAEVLTFDTDRAETE 366

Query: 373 SIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHS 427
            IA  LR +  E+       + L+ + R    +++  LT  G+ ++  S   PL     +
Sbjct: 367 HIADLLRRAHLEDGLDWSDMAVLVRSGRTSIPQLRRSLTAAGVPVEVASDETPLVREPAA 426

Query: 428 SILTSLLNAIFKL----------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
           ++L   L  +                     L+  PL      +              + 
Sbjct: 427 AVLLDALGVVVDADVESDLDERYVRPERCEELLTGPLGGLDATDVRALIRTLRARFPDVA 486

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ------------------------SRLS 513
            +      +   S    R A+          +                            
Sbjct: 487 AHDLVRRAVLDPSFAAGRAASASERVETNTVESSADGDRVGLDTDSLVPHESGSTSRAGG 546

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           E        L   + +    L      +         ++W +     +++          
Sbjct: 547 ERVLGRVRRLAALLAEARAALKDGAGAEQVLWTLWDGAEWGQRLRAQVESGGPAARLAHR 606

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
           +L         ++      E  S           +  + I  +T+  K  + S++ +L  
Sbjct: 607 DLDAVVALFDTAAKIEGRQEFTSVETF----LATLRAQEIPADTLADKGVRGSSVRLLTA 662

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD----------LNLKTAEKYIGQ 683
             S+ L +  +++  + EG WP    ++  L     +           L   T    + +
Sbjct: 663 HRSKGLEWGLVVVAHVQEGAWPDLRRRDSLLGPDRIAPALPDGRHGGLLPPLTRSAMLAE 722

Query: 684 AAHDFEMA--NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD- 740
               F +A       L+ T     ++     SR++  L +         L  RG   L  
Sbjct: 723 ERRLFYVAATRARSRLVVTAVKSPDDDGDQPSRFINELGLREDLIPDPGLAGRGGPALAR 782

Query: 741 --WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
             W+ +L     +P     +   P     R++    
Sbjct: 783 PTWSAELRRHRGRPRLSPSRCVRPPRGGCRSWPPPR 818


>gi|282853719|ref|ZP_06263056.1| UvrD/REP helicase [Propionibacterium acnes J139]
 gi|282583172|gb|EFB88552.1| UvrD/REP helicase [Propionibacterium acnes J139]
 gi|314983238|gb|EFT27330.1| UvrD/REP helicase [Propionibacterium acnes HL110PA3]
 gi|315090100|gb|EFT62076.1| UvrD/REP helicase [Propionibacterium acnes HL110PA4]
          Length = 1071

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 105/1059 (9%), Positives = 254/1059 (23%), Gaps = 145/1059 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     T +A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     ++    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGINTGAHLITAARAYQLAAEVIMGLNKAPLAATHMG 160

Query: 138  LPISPANAIWLAKN----------LADIIDIIETEEKKWEDLHALKNEKYGMWW---LLA 184
                    + LA            +                            W   +  
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLDAPTKRGGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+       ++S       D     + +  I     
Sbjct: 341  QVLSLATNRRCADQIINAANVASEELRQTLSSAAESDDHDPAGDRAEVAVGQPLIAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRLLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +       H+            E     V  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDPDDVEIHLSDAVMEGRPGGHERLQCAVKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +    +    L +   +
Sbjct: 567  IVEVDAHQGDSPDDLVLR-----IEAITGLIDDIAAD--DPHRSAARRDHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +  +   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  VRRSDPTMTITGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            +GV+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYTRSLRENNI----------------------------------PTIA 712
             +      +  +     +                                          
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDNVIQAGTP 799

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
                  +      +   ++   GQ         D        +R        A P   + 
Sbjct: 800  WPVFADVGHGLIDNASRSVDDPGQADRVRAWWTDADALLKDARRHIDLQDEVALPPRLTT 859

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            S+I +L  +P A   R  L+        +       GT FH  +++ +         +  
Sbjct: 860  SQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDAE 914

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKMA 890
             + +       ++EN                +   L    EE   +    + V     M 
Sbjct: 915  EVAE------LDEENTTQEAVAAEPSGAESRALRSLCQAFEESRWAGATVLAVEKSFVMT 968

Query: 891  IESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
            I      + G  D +       G   + D+KT      +        QLS+   A     
Sbjct: 969  IGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA- 1019

Query: 949  FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
               ID  +V    +  +     I           A  L+
Sbjct: 1020 -RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILT 1056


>gi|89889932|ref|ZP_01201443.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
 gi|89518205|gb|EAS20861.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
          Length = 913

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 153/441 (34%), Gaps = 44/441 (9%)

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            +      +  + +  + +    E    L ++G LE+R L+++ +I+  +NEGV P   + 
Sbjct: 475  DLRTVQYLFKQFLPQKKLDFIGEPVKGLQVMGLLETRALDYEHIIMLSVNEGVLPAGKST 534

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRWLQR 718
              ++   M+    L T        A+ F               S   +      SR+L +
Sbjct: 535  ASYIPYDMKIKFGLPTYTDKDSVYAYHFYRLLQRCKNADFIYNSEPGSLGGGEKSRFLMQ 594

Query: 719  LLVLGGTDFFDNLKKRGQCY-LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            L      +   N +        +    L       ++KR       +     +S S I  
Sbjct: 595  LETNNIANHKINHRLYANKITTETVNGLSIKKDDFYFKR-----LQQIAISGFSPSSITS 649

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE------- 830
             I DP   Y  +ILK++ +   ++D      GT+ H  +  L    IN+   E       
Sbjct: 650  YIYDPIDFYRSKILKINDVEEVEEDMAANTMGTMIHKTLEALYLPYINQILDEKHFKEIR 709

Query: 831  --INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI-----EKIFV 883
              IN  +       +     P   +II   +        + +++ + +S      +K+  
Sbjct: 710  SRINKTIHNAYLDSYHTAQDPQGKNIIMYEVAQHYVKKMIAYDQNLVNSGNTLIIKKLEA 769

Query: 884  NIPAKMAIESIG-IHLTGFADRIDLLKSGFVDITDYKTGDN--------PKKETA----- 929
                 + I++IG I L G  DRID L +G   I DYK+G          P    A     
Sbjct: 770  RYSTSLTIDTIGNIKLHGEVDRIDEL-NGRTRIIDYKSGMVNKSNVGLDPDNYEALIDGY 828

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK----KKYSADE 985
             K    Q+ + A        +         + +   K  F    +   +    +    +E
Sbjct: 829  DKSKAFQVLMYAYLYSKN--NPFTECTAGIISFKNFKDGFIPFSVKIGRSFQAQPIDIEE 886

Query: 986  LSEKSLKNLIEIVTLLQNGEQ 1006
            L  K  + LI+I+  L N + 
Sbjct: 887  L-NKFEEQLIQIILELYNNDI 906



 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 67/260 (25%), Gaps = 44/260 (16%)

Query: 44  LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           L+ +T  VP++R    L          +    PII S+ D +      ++    +L    
Sbjct: 19  LSKLTYVVPSRRVATFLNKTIATYLD-QPIFEPIIYSVEDFISHTAQVEIASDVDL---- 73

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                   L      +     +   D           S    I  A  +    + I+   
Sbjct: 74  --------LFDFYNSYLKIENNNTAD-----------SLDEFITWAPTILKDFNEIDRFL 114

Query: 164 KKWED----LHALKNEKYGMWWLLA----------ADF---LKIASKYWTERLVELNASS 206
               D    L  LK  +    W +             F   L++    +TE         
Sbjct: 115 VPPTDFFNYLGNLKELEQ-GHWSILEPKTEMIEKYLHFWKRLELYYNQFTEDCTSKGIVY 173

Query: 207 PVGYQIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                     +AE +      + PI+  G      A   ++       N A +    D +
Sbjct: 174 QGLAYRLAFAKAEQQSKQYNKETPIVFLGLNALNKAEEEIIKIFLESEN-ATIFYDSDQY 232

Query: 266 IPTAIWNTITEKSTNITSSN 285
                ++          +  
Sbjct: 233 FQENEYHEAGRFIRRYKNEW 252


>gi|314966448|gb|EFT10547.1| UvrD/REP helicase [Propionibacterium acnes HL082PA2]
 gi|315092775|gb|EFT64751.1| UvrD/REP helicase [Propionibacterium acnes HL060PA1]
 gi|327327270|gb|EGE69046.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
            HL103PA1]
          Length = 1071

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 106/1059 (10%), Positives = 256/1059 (24%), Gaps = 145/1059 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     TK+A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTKKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     ++    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGINTGAHLITAARAYQLAAEVIMGLNKAPLAATHMG 160

Query: 138  LPISPANAIWLAKN----------LADIIDIIETEEKKWEDLHALKNEKYGMWW---LLA 184
                    + LA            +                            W   +  
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLDAPTKRGGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+       ++S       D     + +  I     
Sbjct: 341  QVLSLATNRRCADQIINAANVASEELRQTLSSAAESDDHDPAGDRAEVAVGQPLIAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRLLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +     + H+            E     V  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDPDDVDIHLSDAVMEGRPGGHERLQCAVKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +    +    L +   +
Sbjct: 567  IVEVDAHQGDSPDDLVLR-----IEAITGLIDDIAAD--DPHRSAARRDHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +  +   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  VRRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            +GV+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYTRSLRENNI----------------------------------PTIA 712
             +      +  +     +                                          
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDNVIQAGTP 799

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
                  +      +   ++   GQ         D        +R        A P   + 
Sbjct: 800  WPVFADVGHGLIDNASRSVDDPGQADRVRAWWTDADALLKDARRHIDLQDEVALPPRLTT 859

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            S+I +L  +P A   R  L+        +       GT FH  +++ +         +  
Sbjct: 860  SQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDAE 914

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKMA 890
             + +       ++EN                +   L    EE   +    + V     M 
Sbjct: 915  EVAE------LDEENTTQEAVAAEPSGAESRALRSLCQAFEESRWAGATVLAVEKSFVMT 968

Query: 891  IESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
            I      + G  D +       G   + D+KT      +        QLS+   A     
Sbjct: 969  IGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA- 1019

Query: 949  FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
               ID  +V    +  +     I           A  L+
Sbjct: 1020 -RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILT 1056


>gi|225626478|ref|ZP_03784517.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo]
 gi|256158600|ref|ZP_05456490.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1]
 gi|256254011|ref|ZP_05459547.1| double-strand break repair helicase AddA [Brucella ceti B1/94]
 gi|260169510|ref|ZP_05756321.1| double-strand break repair helicase AddA [Brucella sp. F5/99]
 gi|261221152|ref|ZP_05935433.1| double-strand break repair helicase AddA [Brucella ceti B1/94]
 gi|261759038|ref|ZP_06002747.1| UvrD/REP helicase [Brucella sp. F5/99]
 gi|265997112|ref|ZP_06109669.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1]
 gi|225618135|gb|EEH15178.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo]
 gi|260919736|gb|EEX86389.1| double-strand break repair helicase AddA [Brucella ceti B1/94]
 gi|261739022|gb|EEY27018.1| UvrD/REP helicase [Brucella sp. F5/99]
 gi|262551580|gb|EEZ07570.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1]
          Length = 1180

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%)

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131
            +L  +  + +  ++     L +    +       +   LE A  +      L        
Sbjct: 241  LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300

Query: 132  PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E      +  A    L     +  D      E   + L  L   +     L A   +  
Sbjct: 301  GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
              + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358  LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243  ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +++                      V +         G            I+ +++N  
Sbjct: 418  WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283  SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                  S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478  LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
                +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538  EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589  DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A L+K PL  +     +                  +       + +   ++  +N     
Sbjct: 649  AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  +      A      +L  + P      ++       +           L+ +  
Sbjct: 709  PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                    L    +   + ++ +     G+ +             L+D  +      ++ 
Sbjct: 767  AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L               L     +              +R  +    L        +   
Sbjct: 815  KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                  GTR    T      +     S      +       +    +      +  +   
Sbjct: 875  IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805
             +     +   +P       PR  + S    LI           L    +      P   
Sbjct: 935  TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RGT  H ++  L      K        + +I                       ++  
Sbjct: 993  LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037

Query: 866  SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                H          +F         +   + I      ++G  DRI + +S  V I DY
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096

Query: 919  KTGDNPKK--ETAQKLIDPQLSLEAAALK 945
            KT   P K  E        QL+L    L+
Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125


>gi|254718137|ref|ZP_05179948.1| ATP-dependent nuclease subunit A [Brucella sp. 83/13]
          Length = 855

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 89/830 (10%), Positives = 201/830 (24%), Gaps = 93/830 (11%)

Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA--------E 220
           L  LK  +     L A   +    + + +                 +   A        +
Sbjct: 11  LDRLKELRLVRLNLAALALIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQ 70

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMS--------------------TVANHPNGAIVLP 260
           + +      I++  +  + P   +++                      V +         
Sbjct: 71  YKLDRGIDHILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQ 130

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNV 316
           G            I+ +++N        S +  +     + + +D +  + E  + L   
Sbjct: 131 GAVPDDFAEQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGA 190

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +     R     +  +    +     +  + ++P  Q     V L         A  IA 
Sbjct: 191 TVHSAIRDKEPGEIEIWDMLTPEMVEEPDDWRVPVDQLAAPAVRL---------AEQIAA 241

Query: 377 ALRMSLDE------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            +R  LD              +    L+         +   L    + +  +  + L++ 
Sbjct: 242 TIRYWLDRGELIPGQNRKIAPRDIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSH 301

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
           +    L +L   + + +D +++A L+K PL  +     +                  +  
Sbjct: 302 IAIQDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASR 361

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                + +   ++  +N           +      A      +L  + P      ++   
Sbjct: 362 HDAELAQIHKLLSRWRNMADTMPVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQN 419

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               +           L+ +          L    +   + ++ +     G+ +      
Sbjct: 420 YALSAERAGLPGLQAFLETLEAASPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF----- 474

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
                  L+D  +      ++  L               L     +              
Sbjct: 475 -------LVDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLK 527

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           +R  +    L        +         GTR    T      +     S      +    
Sbjct: 528 NRAEEEYRRLLYVGMTRAEDRLIICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVA 587

Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
              +    +      +  +    +         +P       PR  + S    LI     
Sbjct: 588 ARRYRKTPRSFIEINEEDQAGATSLPPLPLDYRQPMKAEPGLPRPLAPSGASALIEADEE 647

Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                   +              RGT  H ++  L      K        + +I      
Sbjct: 648 PPLDLSSPVLEPGTGAPAF-ALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD--- 703

Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIH 897
                            ++      H          +F         +   + I      
Sbjct: 704 ------------WPDAERLKAWQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHA 751

Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945
           ++G  DRI + +S  V I DYKT   P K           QL+L    L+
Sbjct: 752 VSGQIDRISVDES-RVLIVDYKTNRPPPKTLEAVPFAYRAQLALYRELLR 800


>gi|325977975|ref|YP_004287691.1| ATP-dependent nuclease subunit B [Streptococcus gallolyticus subsp.
            gallolyticus ATCC BAA-2069]
 gi|325177903|emb|CBZ47947.1| ATP-dependent nuclease subunit B [Streptococcus gallolyticus subsp.
            gallolyticus ATCC BAA-2069]
          Length = 640

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/510 (12%), Positives = 149/510 (29%), Gaps = 75/510 (14%)

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             E+  +T + + ++        K +  + + +I   +     +        + +      
Sbjct: 55   HEQVWRTFTGILTQFQTIFGQEKLSLDDCLSLIRSGMLAAQYRVVPATVDVVSVKSYDLV 114

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE--KYIGQAAH-----DFE 689
                   +   G+ +  +PK    +  +S   ++ +N  T +  ++   +        F 
Sbjct: 115  EPHTNKFVFALGMTQAHFPKIAQNSSLISDEERAQINESTDDNQRFDIVSRENIKKNHFA 174

Query: 690  MAN----GTRHLIYTRSLRENNIPTIASRWLQRLL------------------------- 720
              +     T  L+ +     N      S +L  L                          
Sbjct: 175  ALSLFNSATEELVLSLPQIANEAEDTESSYLTELASFGVPVLAKGRNRLSTDAEDIGNYK 234

Query: 721  ----------VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP----------- 759
                       L   +  +  K+    +    R L         + P             
Sbjct: 235  ALLSRVIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLAAEGIELPLIKDNMQTKTVSA 294

Query: 760  ----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                      +P + S S +    N+ Y  + + +L L  +      PD  + GT  H +
Sbjct: 295  DVIEARFPSDEPISLSSSAVTTFYNNQYKYFLQYVLGLQEVETIH--PDARNHGTYLHRV 352

Query: 816  ITELIKKRINKNTPEINHLMKQI--IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
               ++K   N +         Q   ++  F+              +   I+ S       
Sbjct: 353  FELVMKDDSNHSFDSKLDKAIQTTNLEDDFKFVYEEDEESRYSLTVLEDIARSTAMILRD 412

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKL 932
              + I+        ++ I    + + G  DR+D L  G + I DYK+  N    +     
Sbjct: 413  D-AQIQVESEEETFELMIA-NSVRIRGIIDRVDRLSDGSLGIVDYKSSRNTFDIQKFYNG 470

Query: 933  IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
            + PQL     AL+       +   +    Y+ +++      +    +K   +   E + +
Sbjct: 471  LSPQLVTYVQALRDKKGLS-ESEHIFGAMYLHMQEPKVDLSLVATTEKILENLAKELTYR 529

Query: 993  NLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022
             L          E+ ++++ R     ++ S
Sbjct: 530  GL------FLEDEKAYLANGRYHLNDSLYS 553


>gi|88608061|ref|YP_506408.1| hypothetical protein NSE_0524 [Neorickettsia sennetsu str. Miyayama]
 gi|88600230|gb|ABD45698.1| conserved domain protein [Neorickettsia sennetsu str. Miyayama]
          Length = 779

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 101/266 (37%), Gaps = 18/266 (6%)

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
               +     + K F P+E  P+  S + I+ LINDPY  Y R IL +         P   
Sbjct: 527  QPIETVAVVKEKLFVPIEMLPKKLSPTMIELLINDPYRFYVRYILAIKETNSVVVKPGHK 586

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH-IDIIWRHLFHKISH 865
            + G + H +     K R +K          +I+++  +        +  +W     KI  
Sbjct: 587  EFGYIMHKVFQSASKTRFSK------EEYTRILENELKTYATRYQYVKNLWLPRGLKILE 640

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925
             F     +    I+ +       + I   G+ L    DRI+ LK   V+I ++KTG  P 
Sbjct: 641  QFATFHNRRLEEIDILENEKELSIFIAD-GLELFCRFDRIESLKEDTVNIIEFKTGTIPT 699

Query: 926  KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE 985
             +     + PQL L+   L+          +  ++ Y +             KK  S +E
Sbjct: 700  FKEISSFVKPQLPLQGLILQKN-----RNVRFNSMMYCK-----PSTEKVTVKKLQSPEE 749

Query: 986  LSEKSLKNLIEIVTLLQNGEQPFISH 1011
               +  K L  +  +  +GE  F+++
Sbjct: 750  TIAEIHKKLTTLAQIYLSGEFDFLAN 775


>gi|332664641|ref|YP_004447429.1| UvrD/REP helicase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333455|gb|AEE50556.1| UvrD/REP helicase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1041

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 107/1001 (10%), Positives = 258/1001 (25%), Gaps = 106/1001 (10%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT--ADLLLSYNLNPP 102
             ++     T   +  +R   +++ G     +  I +             +L    +L P 
Sbjct: 59   QNILCLTFTDAGVTAMRERLLQLIGPDGHRV-HIYTFHSFCNAVIQDNLELFGRQDLEPL 117

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                   LE   LI    ++L         +S +    +     +    + D       +
Sbjct: 118  GD-----LEKVDLIRALIDELDVEHPLKRGQSDVYFYETHLQDFFQRCKMEDWTAEYVIQ 172

Query: 163  EKK------WE----------------DLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
            +         +                DL   K ++  +               +     
Sbjct: 173  QIDAWLASLPDRPEYRYQRKQGAQQKGDLKEAKIKEEQIRMQR-LRAAAALYPRYEAAKQ 231

Query: 201  ELNASSPVGYQIALMRAEAEHLMKGTKG-----PIIIAGSTGSIPATARLMSTVANHPNG 255
                       + ++RA   H             +++     +  +   ++  + N+   
Sbjct: 232  AARRYDYQDMILWVLRAFETHDYLLRSYQEQYLYVLVDEYQDTNGSQNEILLQLINYWET 291

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
              V    D       +     K+     +        Q++L  ++  L      V+   +
Sbjct: 292  PNVFLVGDDDQSIFEFQGARLKNLTDFYAK------YQHNLHTVV--LTENYRSVQGFLD 343

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
             + ++   + +   S L           + +N +    K  +   + E  N   E   I 
Sbjct: 344  AAGQLIQNNQLRIISHLQALG-------LNKNLVAAAVKGKATPLISEYPNRISEETDIV 396

Query: 376  IALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
              +  +L +     ++ A+I A     R +   L + GI       + +        L S
Sbjct: 397  QQI-EALQQKGIPLQEIAIIYAQHRQVRNLLGLLEKKGIPYQTRRDVNILELPLIQRLRS 455

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
                         +   + H   +    E  L           L  +      +DL  L 
Sbjct: 456  -------------LLDYLHHETLQPHSGELRL--------FQILHAHFLGISPLDLARLS 494

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                    +         R    D      L       +T          + C N  +  
Sbjct: 495  THLARFPAD----VRPPWRELLLDHAALGELNLEKPAVLTNFAILLEELIADCLNEPLPT 550

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              +  +     +     +       +        +  +         A  +  +  +   
Sbjct: 551  LLEKLLNRSGFLQYILEQPNHAWQIQVLHTFFQYVREECQRRPHYSLAELLHNLHRMEAN 610

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                 +    +    + +L    ++ L F  + +    +  W   + +N +   + ++  
Sbjct: 611  RLPLALSRLSDDQVGVHLLTAHAAKGLEFTAVFMLDCVKDYWEPASGRNSYRFTLPETLT 670

Query: 673  NLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDN 730
                 +    +    +      +  L  + + +++       + ++  LL          
Sbjct: 671  YSGEEDATEARRRLFYVALTRAKTFLHLSYARQDDSEKELQRALYIDELLSTQTLALEQK 730

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
            +            +L    K     + +       +    S S +   +N P A Y   I
Sbjct: 731  VLPAPLVLSTQLLRLQEQQKPSVAPQDRSMIEAILRNFRMSISALNTFLNCPLAFYYEYI 790

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI--NKNTPEINHLMKQIIDSHFEKENL 848
            LK+  +       + T  GT  HN +  L  + +   +        +    +    ++  
Sbjct: 791  LKVPGLH-----NEATAYGTAVHNALQRLFDRMLLSPQRLFPSEKELLYFFEQELNRQRQ 845

Query: 849  PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA-IESIGIHLTGFADRIDL 907
               +    R     +    L    +         V +   +  IE  G+ LTG  D+I+ 
Sbjct: 846  QLSLPSFER-RLE-LGKRQLGRYYQYYYGRWHKRVRVEYTIRQIEVDGVPLTGTIDKIEF 903

Query: 908  LKSGFVDITDYKTGDNPKKETAQKLID---------PQLSLEAAALKAGSFSQIDCRKVA 958
                 V I DYKTG        ++  D          QL       +             
Sbjct: 904  YDQLRVGIIDYKTGS-HDGTKLRRPTDTNPYGGTYWRQLLFYKLLYEHF-DRSSRRVTFG 961

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSAD---ELSEKSLKNLIE 996
             + Y+      +   +             ++  ++   + +
Sbjct: 962  EIAYLDPTPDGQFPEVRLSFTPEDTAFMRQMIREAYAKIRK 1002


>gi|188527166|ref|YP_001909853.1| hypothetical protein HPSH_01865 [Helicobacter pylori Shi470]
 gi|188143406|gb|ACD47823.1| hypothetical protein HPSH_01865 [Helicobacter pylori Shi470]
          Length = 778

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/391 (15%), Positives = 131/391 (33%), Gaps = 54/391 (13%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +     S  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +    T                   ++S S +   +
Sbjct: 494 DLHIEPIKDAYTLFAPTPLKDYQEEEIQATIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +   + +  G+L H ++ E  +   +KN   +   + Q++
Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSAIGSLLHELLKEAYE--KDKNPYALEERLIQLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    + N+ P   +       KI  +F   E++   + I+ + +    +  I+  GI  
Sbjct: 595 E---TRGNITPKERLDTLIALKKI-QAFYIKEKERFNAKIKILDLEKSFETTIQ--GIAF 648

Query: 899 TGFADRIDLLKSGFVDITDY--KTG--------------DNPKKETAQKLIDPQLSLEAA 942
            G  DRID      + + DY  K+G                 +          Q+++ A 
Sbjct: 649 KGRIDRIDKTADNEIILLDYKFKSGLKLDNMSEKQRGSLSPIEIAQISADY--QMAIYAF 706

Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
           ALK   +           F+  L++   ++ 
Sbjct: 707 ALKNLGYKG-----PIKAFFYDLRKGKLLEE 732


>gi|302869751|ref|YP_003838388.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
 gi|302572610|gb|ADL48812.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
          Length = 1240

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 94/769 (12%), Positives = 188/769 (24%), Gaps = 56/769 (7%)

Query: 30  LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT---GKKSTILPIIKSLGDVVE 86
           LVE         +    + +    +R   ELR          G +    P++++      
Sbjct: 136 LVEAVAARVAEGVDPERILVLTFGRRGATELRHRIEARIAEGGHRVIREPLVRTFPAYAF 195

Query: 87  EKFTADLLLSYNL-NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                            ++  ++ L +  L+ +   +  D      P             
Sbjct: 196 GLLRRAAAERGEPSPRLLTGPEQDLIIRELLDVVGEEPGDD-----PVGWPEDLRPALRT 250

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN-- 203
              A+ L D++           +L  L  +     W  AA FL+        R V     
Sbjct: 251 RAFAQQLRDLLMRAAERGVGPVELARLGEKLGRADWPAAARFLREYVAVLALRDVSNRGS 310

Query: 204 -ASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
            A  P     A      +        +     + +     + PA   L++ VA    G  
Sbjct: 311 VAYDPAELVRAATGMLLDDPELLAAERRRLTHVYVDELADTDPAQLDLLAVVAG--GGRS 368

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
           ++   D    T  +                 ++    +   L        E    L   +
Sbjct: 369 LVAFADPDSSTYAFRGADPAGVTTFPHRFRTASGAPAAQVTLTTSYRAGPE----LLAAT 424

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
             +  R                          P        V ++   +   E+  +A A
Sbjct: 425 ARLARRLR---------------GPAGHRRLRPLPGVPAGTVEVLTFRSATSESAWLAHA 469

Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRF-----GINIDISAGIPLSTTLHSSILTS 432
           LR +   +    + +        R    L R         +     +PL      + L  
Sbjct: 470 LREAHLLDGVPWSRMAVLVRSTGRQLPSLRRALHTAGVPTVVHGEDLPLHLQPAVAPLLL 529

Query: 433 LLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
           LL    +    D  A   L+  PL           R +  L  +AL           L  
Sbjct: 530 LLRCALEPDRLDEEAAVALLHSPLGG--ADPLAERRLRQGLRALALAAGDRRPSGELLVE 587

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            + D                 ++                    L        S       
Sbjct: 588 ALRDPAELATIERRWAAPAQAVAHLLATARETAGRPGATVEDVLWAVWR--ESGLAERWA 645

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              T+      ++      R        +    L    ++  +     +   +    ++ 
Sbjct: 646 GAITRGRAATGEHETAQRWRAEAADRDLDAVLVLFDAAARFTDRLPGAR-TEVFLDHVLG 704

Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ- 669
           + +  +T+    ++   + +L    ++ L +D + + G+ EGVWP    +   L      
Sbjct: 705 QELPADTLAAAADRGDAVRLLTAHAAKGLEWDLVAVAGVQEGVWPDLRLRGSLLGSERLV 764

Query: 670 -----SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
                           +GQ +   +      H+  +R+ R   +  +AS  +        
Sbjct: 765 DVLAGRADGAGLRASLVGQTSALLDEERRLFHVAISRARRRLLVTAVASAAVGGDDHEEQ 824

Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
              F +                 T   P    P    P          +
Sbjct: 825 PSRFLHELAAADPPATGGGGTAPTGPNPTGPAPTGPNPTGPNATGNGPT 873



 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 106/983 (10%), Positives = 225/983 (22%), Gaps = 52/983 (5%)

Query: 15   SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
             P  R    A     L+       + P+ LA              L  +        +  
Sbjct: 245  RPALRTRAFAQQLRDLLMRAAERGVGPVELAR-------------LGEKLGRADWPAAAR 291

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
                      + +      +         +    LL+   L+   R +L  +  D   ++
Sbjct: 292  FLREYVAVLALRDVSNRGSVAYDPAELVRAATGMLLDDPELLAAERRRLTHVYVDELADT 351

Query: 135  PLSLPISPANAIWLAKNLADIID----IIETEEKKWEDLHALKNE-KYGMWWLLAADFLK 189
              +     A      ++L    D               +    +  +       A   L 
Sbjct: 352  DPAQLDLLAVVAGGGRSLVAFADPDSSTYAFRGADPAGVTTFPHRFRTASGAPAAQVTLT 411

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGSTGSIPATARLMST 248
             + +   E L      +      A  R              ++   S  S  A       
Sbjct: 412  TSYRAGPELLAATARLARRLRGPAGHRRLRPLPGVPAGTVEVLTFRSATSESAWLAHALR 471

Query: 249  VANHPNGAIV--LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
             A+  +G     +  L       + +      T    +       P +    +   L + 
Sbjct: 472  EAHLLDGVPWSRMAVLVRSTGRQLPSLRRALHTAGVPTVVHGEDLPLHLQPAVAPLLLLL 531

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            R  ++                     P     +R            ++   ++ +    +
Sbjct: 532  RCALEPDRLDEEAAVALLHSPLGGADPLAERRLRQGLRALALAAGDRRPSGELLVEALRD 591

Query: 367  EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
              E    +A   R      +  + L+   R  A R    +      +   +G+       
Sbjct: 592  PAE----LATIERRWAAPAQAVAHLLATARETAGRPGATVEDVLWAVWRESGLAERWAGA 647

Query: 427  SSILTSLLNAI--FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
             +   +        +     A    +   L  F       +R  + L         +   
Sbjct: 648  ITRGRAATGEHETAQRWRAEAADRDLDAVLVLF----DAAARFTDRLPGARTEVFLDHVL 703

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              +L +  L   A + +   +    +    E   +AV  V   +     L          
Sbjct: 704  GQELPADTLAAAADRGDAVRLLTAHAAKGLEWDLVAVAGVQEGVWPDLRLRGSLLGSERL 763

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               L+           L         +   L+     +    L    + + +    +  E
Sbjct: 764  VDVLAGRADGAGLRASLVGQTSALLDEERRLFHVAISRARRRLLVTAVASAAVGGDDHEE 823

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
                    +            +               +         G       +    
Sbjct: 824  QPSRFLHELAAADPPATGGGGTAPTGPNPTGPAPTGPNPTGPNATGNGPTGNGPTRTAMR 883

Query: 665  SRVMQSDLNLKTAEKYIGQ-AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
              ++   +         G  AA    +      L    +     +   A+   +R    G
Sbjct: 884  GGIVDGPVPHGDEHPQDGPPAALPVTLPPRGLTLSALVAELRTAVTDPATPITRRHAAAG 943

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                       G    DW      +  +P     +P           + S ++  +    
Sbjct: 944  ELARLAAAGVPGAHPDDWWGLRGLSDDRPLVDEGEPV--------RVTPSAMESALRCSL 995

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
                 R                   G L H              + +   L++ +     
Sbjct: 996  RWLLERHGGSGPASA------AQGVGNLVHAA-----AMLAEDASVDREALLEYVAARFD 1044

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
              E     +    R     +    L         +  I      ++   S  I LTG  D
Sbjct: 1045 AIELAARWMAGPERQRAEAMVDKLLRWLAGNPRRLLAIEHEFAVRLDDPSRPIELTGRVD 1104

Query: 904  RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            R+++   G + + D KTG +      +    PQL    AA++AG F++    +      +
Sbjct: 1105 RLEVDDEGRLVVIDLKTGKSTAVTEREVAEHPQLGAYQAAVEAGGFAEFG-EEPGGAALV 1163

Query: 964  RLKQKFKIDCITNDKKKYSADEL 986
            +L    +              E 
Sbjct: 1164 QLGTGARDAKEQTQAAAGEGPEA 1186


>gi|315637851|ref|ZP_07893041.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
 gi|315482092|gb|EFU72706.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
          Length = 794

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 118/355 (33%), Gaps = 38/355 (10%)

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
           + K        +  +G LESR L+FD +I+   NE + PK +    FL+  +++   L +
Sbjct: 414 SFKQSYVGGGAVTAMGILESRGLSFDGVIVVDFNEDLIPKRSVNELFLNNEVRTKAGLIS 473

Query: 677 AEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            EK        +E      + +       E       SR L+ L          + K   
Sbjct: 474 YEKRENLQRFYYEQLFKNAKKISICYVENEEKS---RSRLLEDLEFRLDLTKEFSQKA-- 528

Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
             YL+  +      +        P           S+S +   +      + + I  L  
Sbjct: 529 --YLNALKLNYKAKQIKLEPPQAPKLKHNLFATPLSYSRLTLFLESKRTYFYKYIKHLKE 586

Query: 796 IPHFKKDPDRTD-------RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
               K D    +        G   H I+    K     +        +++  S  EKE  
Sbjct: 587 PRELKMDIKEQNDRKRLKNLGIFIHRILELYYKHYDFFD--------EKLFTSLLEKEGQ 638

Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNI--PAKMAIESIGIHLTGFADRI 905
              +D +   L       F + E++       I  + +     + +E   I LTG  DRI
Sbjct: 639 KEGLDALDLELLKIKFKEFAKKEQERFKQGYHIKHLELNMDKSIILEGQRIELTGKIDRI 698

Query: 906 DLLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL---KAGSFSQIDCRK 956
           D  +  G + I DYK+G  P+K         QL+            +F  ++  +
Sbjct: 699 DSNERFGEL-ILDYKSGKIPEK-------SYQLAFYKLLYDENAHAAFYDLNDFE 745


>gi|314923610|gb|EFS87441.1| UvrD/REP helicase [Propionibacterium acnes HL001PA1]
          Length = 1071

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 106/1059 (10%), Positives = 255/1059 (24%), Gaps = 145/1059 (13%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77
              ++   +V       ++P     +     TK+A  EL         +   +      P 
Sbjct: 49   TTVMAARVVWLVASRLVSPE---EILGLTFTKKATAELSERIESNLTRVGLLTSEQPRPT 105

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +      + F   L+  Y     ++    L+  AR   +    +  + K     + + 
Sbjct: 106  VAT-----YDSFAGTLVNDYGAWDGINTGAHLITAARAYQLAAEVIMGLNKAPLAATHMG 160

Query: 138  LPISPANAIWLAKN----------LADIIDIIETEEKKWEDLHALKNEKYGMWW---LLA 184
                    + LA            +                            W   +  
Sbjct: 161  PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLDAPTKRGGDRYADIDKWLSRVDE 220

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
             + L      +     E          +  +     H       +     +++     + 
Sbjct: 221  REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280

Query: 240  PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             A A +++ + + P+     G  V+   D       W      +                
Sbjct: 281  SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             +  L        + +      S E+       ++S       D     + +  I     
Sbjct: 341  QVLSLATNRRCADQIINVANVASEELRQTLSSAAESDDHDPAGDRAEVAVGQPLIAPEGN 400

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410
               +V +    +  +E  + A  L  + +         +A++    +    +   LT   
Sbjct: 401  RRGEVTVAAYPDWVKECQACADTLVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +    L      +++ + L  +    D  A+ATL+  P       +  +      
Sbjct: 461  VPVRFANLSGLLRLPDIAMVVAHLRLLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                           +       D +       H+            E     V  +   
Sbjct: 516  ---------YRRARALAKARAKDDGLDPDDVEIHLSDAVMEGRPGGHERLQCAVKRVCAE 566

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            I  +  ++ +              +     + ++  D      +    +    L +   +
Sbjct: 567  IVEVDAHQGDSPDDLVLR-----IEAITGLIDDIAAD--DPHRSAARRDHLDALWNAIRE 619

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +  +   +    I         +     +   +    + +     ++ L +  +I+  + 
Sbjct: 620  VRRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679

Query: 651  EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686
            +GV+P  +  + F S                           ++ +     +    +A  
Sbjct: 680  QGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739

Query: 687  DFEMANGTRHLIYTRSLRENNI----------------------------------PTIA 712
             +      +  +     +                                          
Sbjct: 740  AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDNVIQAGTP 799

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
                  +      +   ++   GQ         D        +R        A P   + 
Sbjct: 800  WPVFADVGHGLIDNASRSVDDPGQADRVRAWWTDADALLKDARRHIDLQDEVALPPRLTT 859

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            S+I +L  +P A   R  L+        +       GT FH  +++ +         +  
Sbjct: 860  SQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDAE 914

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKMA 890
             + +       ++EN                +   L    EE   +    + V     M 
Sbjct: 915  EVAE------LDEENTTQEAVAAEPSGAESRALRSLCQAFEESRWAGATVLAVEKSFVMT 968

Query: 891  IESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
            I      + G  D +       G   + D+KT      +        QLS+   A     
Sbjct: 969  IGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA- 1019

Query: 949  FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
               ID  +V    +  +     I           A  L+
Sbjct: 1020 -RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILT 1056


>gi|225872585|ref|YP_002754040.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
            capsulatum ATCC 51196]
 gi|225792506|gb|ACO32596.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
            capsulatum ATCC 51196]
          Length = 1201

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 104/905 (11%), Positives = 228/905 (25%), Gaps = 84/905 (9%)

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET------EEKKWEDLHALK 173
            ++ +P   K    +   +      ++      L   +  I+T      E+ +WE L  L 
Sbjct: 327  KDGIPPASKGPEAKQWKARLDKLMDSCRRTPGLLAAMQQIQTLPGVHYEDAQWETLRHLF 386

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM----KGTKGP 229
                      A   L++    +       N    +    A +    +             
Sbjct: 387  VA-----LRRALAELRVVFAEY-------NQVDFLEISRAALEVLGQSESGMRWSEQLRH 434

Query: 230  IIIAGSTGSIPATARLMSTVANH---PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
            I++     +     +L+ ++  H    +G       D      ++     +         
Sbjct: 435  ILVDEFQDTSRQQHQLLESLVEHWMPEDGRTFFLVGDPMQSIYLFRQAEVELFERVREQG 494

Query: 287  TYSTHPQYSLA-----KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
               +    +L      +    L     DV      +      + V  ++           
Sbjct: 495  LGESLTAETLKLRVNFRSHARLTEPLNDVFEPVFAATAGAAGARVEFEASSAAVEEVATI 554

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--------KSALIT 393
             +        +    +D     A     EA ++A  +    +            + A++ 
Sbjct: 555  YEPPLQVHAQLCSTDADAEQKRAL-RLTEAETVAEIIEQHAERIAAARAAGEEYRVAVLV 613

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
             +R+    +   L R GI         L+       L +L+ A+    D +A  +L++ P
Sbjct: 614  RNRSHLAWIVPALRRRGIAFRAVEIESLAARQEMLDLMALVRALVHPMDRIAWLSLLRAP 673

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                   E +     +  E       +     +            +          +R  
Sbjct: 674  WCGLSLEELHRLAGGDDAESSRHPMLELMQQNLARLGEEAQARVRRVLAVMERAAAARTR 733

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
              +       V+     +   +  +  +             ++  + L  V  D    L 
Sbjct: 734  PGETASFSAWVERTWHALGGPLCLEGAEREN---------AEVFFSLLDEVSPDGAELLT 784

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI-ITRLIDGETVKPKIEKSSTLFILG 632
              + ++  +  +     + E          +   +    +I     +    +   L    
Sbjct: 785  REFSQKLERLFAQPDPAVSERCGVQIMTMHKAKGLGFDVVIVPGLERGSGREKQPLVTSL 844

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
               +     D   +  +             ++ +  Q        E+           A 
Sbjct: 845  QRPNPETGKDVFFVAPIGAKGSGTKDPLYAWVQKQKQQRYG----EERKRLFYVACTRAR 900

Query: 693  GTRHLI--YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
               HLI   T   +    P+  S        L G       K   +   +          
Sbjct: 901  QELHLIGTATYGEKGLRKPSAGSLLATAWPALEGAFEMAMPKAETERTGEVIEFPAARPV 960

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD----RT 806
                +          + R    S    L     A    R L+        + P+      
Sbjct: 961  PGVLEEIAAAAASGTRVRRLPLSAEWTLDEGKDARMEARALQSPGRETCFRRPEGSRLAR 1020

Query: 807  DRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
              G + H ++  +  +              +++ + D    +E +   +         ++
Sbjct: 1021 AVGQVLHTMLERMGAEIAAGRWDAAGFEVKVLRLLGDHALIQEQVREAVRE-----VLRM 1075

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG-FADRIDLLK-------SGFVDI 915
                   EE      E                  L    ADR+            G++ I
Sbjct: 1076 LEQCAADEEARWILGEHEGGESEPSWTGRGPDGVLRTLRADRVFQAGARPLEASDGYLWI 1135

Query: 916  TDYKTGDNPKKETAQKL-------IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
             DYKT      E+A+           PQL   A  L+    + +  R    L+Y RL+  
Sbjct: 1136 VDYKTSTPMGGESAEDFLRRERSVYAPQLQAYAQVLRTARGTNLPVR--LALYYPRLEGG 1193

Query: 969  FKIDC 973
             ++D 
Sbjct: 1194 NRLDW 1198


>gi|313884183|ref|ZP_07817949.1| putative ATP-dependent nuclease subunit B [Eremococcus coleocola
            ACS-139-V-Col8]
 gi|312620630|gb|EFR32053.1| putative ATP-dependent nuclease subunit B [Eremococcus coleocola
            ACS-139-V-Col8]
          Length = 1196

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 116/947 (12%), Positives = 257/947 (27%), Gaps = 146/947 (15%)

Query: 147  WLAKNLADIIDIIETEEKKWEDL--HALKNEK--YGMWWLLAADFLKIASKYWTERLVEL 202
                 L      +   +    DL    L ++              L    + + E +  L
Sbjct: 122  GFLDKLLQQFKELYEAQVTATDLLLARLDHDNSLIQNQEEREIQELSDLYQSFLEEISRL 181

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                 V YQ        +         +I+          + L++  A +     V   L
Sbjct: 182  QLDDYVIYQQLEEILTKKGAEGFKDTYLIMDQHYHLNARESHLLAQFARYCQ--KVWLTL 239

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
                  A+            +S  +          ++L   DI   ++  L +       
Sbjct: 240  PLSHQEALSQQYNPVINLPRASYRSIKDLILSLNIEVLPDWDINETNLDTLPS------- 292

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA-DNEREEAISIAIALRMS 381
                I +         +  T+  + K+        D    +A  ++  E +++   +R  
Sbjct: 293  ----IMQVGASFKDIQLMQTNGYQPKLS------QDHHFFQAFASQEAELMAVTNEIRKL 342

Query: 382  LDENK---KKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
            + +         ++  + +  R +     +   I +       ++         SLLN  
Sbjct: 343  VMKQGYRYSDILVLARNLDKYRTLAPLYFSLNEIPLFFDHAETMAKHSLVDFFESLLNLK 402

Query: 438  FKLNDFMAIATLVKHPLAKFGFP------EKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
                    +  L+K    K          +       N LE + +     SY +      
Sbjct: 403  AYHFKDRDLLYLLKSQYFKLDLTSLGIKTDAEYENGVNQLENILIANGYFSYRMSQESFQ 462

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVL-----LVDHILQCITPLVTYKTNKNSTCG 546
                   QK              E  EL        LV+ + +     +T          
Sbjct: 463  WHFTNQDQKMVDPYGVATDISLGELAELGRQSINRQLVEPLKRWSQETLTGGDAVTWFYQ 522

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
             L I    +  +       ++E +   +  +E+   +L +L  +        K +   + 
Sbjct: 523  FLEILKIKESLIELRDE-AIEEGQLAASRHYEQVWDSLMALLEEFYTIFKNKKISFDLFK 581

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            D++ + +   +          +        ++       +  LN+   P    +  FL+R
Sbjct: 582  DLLIQGLKKSSFNIIPPTLDQVRFTNIESPQIRQAKICFVLDLNQDQLPLIQVQESFLNR 641

Query: 667  VMQSD----------LNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRENNIPTIASRW 715
              +            L+L   + Y  +    +++         +      N      S +
Sbjct: 642  QQRQAMNDKMLVYQHLSLLEDDAYHREFFLAYQLFFRASDRFYFAYHQDVNEENQTWSPF 701

Query: 716  LQRLLVLG------------------------------------------GTDFFDNLKK 733
            + +L+                                             G     +L+ 
Sbjct: 702  ISQLMKTHQFKEGWPPLDSNSGRALVYSSPAIQKMNFLEGVTRLDTESQQGQAHAQDLRL 761

Query: 734  RGQCYLDWTRK--------------LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                 L+W R+                     P   + +    L   P   S S ++   
Sbjct: 762  SLGRLLNWDRQNGLIWGAIKDLVLRAKTNQSLPDQIKAETAVALYGNPLVASVSRLESYF 821

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK------RINKNTPEINH 833
             DPY+ + +  L+L     F  DP     G  +H I+   + +       +   +P+   
Sbjct: 822  QDPYSHFLQYGLRLKERDQFLMDPMVA--GNYYHEILDRTLSQLIEEEIHLKDLSPDQLQ 879

Query: 834  LMKQ---------IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++             +  F+   +   +  + +    ++  + L       +  + +   
Sbjct: 880  ILLDHQLQAFNEIEANQIFQASAVNRALQQLMQADISQVLLNHLA--VAHLTGNQPLHTE 937

Query: 885  IPA----KMAIESI--------GIHLTGFADRIDLLKSGF---VDITDYKTG-DNPKKET 928
            +      +   + +         I LTG  DRID L       + + DYK+G    K + 
Sbjct: 938  LIFGPGRRQDFKGLAYPLGHNQEIRLTGKIDRIDTLSRKGQDYLSVIDYKSGNKEFKLQN 997

Query: 929  AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
                +D Q+        + + +     +    FY  L +KF+   I 
Sbjct: 998  LYYGLDLQIVTYL----SVALANYPNSQALGAFYQSLGRKFESKKID 1040


>gi|294851330|ref|ZP_06792003.1| double-strand break repair helicase AddA [Brucella sp. NVSL 07-0026]
 gi|294819919|gb|EFG36918.1| double-strand break repair helicase AddA [Brucella sp. NVSL 07-0026]
          Length = 1180

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 101/929 (10%), Positives = 227/929 (24%), Gaps = 101/929 (10%)

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131
            +L  +  + +  ++     L +    +       +   LE A  +      L        
Sbjct: 241  LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300

Query: 132  PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E      +  A    L     +  D      E   + L  L   +     L A   +  
Sbjct: 301  GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
              + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358  LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243  ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +++                      V +         G            I+ +++N  
Sbjct: 418  WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283  SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                  S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478  LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
                +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538  EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589  DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A L+K PL  +     +                  +       + +   ++  +N     
Sbjct: 649  AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  +      A      +L  + P      ++       +           L+ +  
Sbjct: 709  PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                    L    +   + ++ +     G+ +             L+D  +      ++ 
Sbjct: 767  AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L                     +              +R  +    L        +   
Sbjct: 815  KLIPYDFQGDGPPVKGFFWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                  GTR    T      +     S      +       +    +      +  +   
Sbjct: 875  IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805
             +     +   +P       PR  + S    LI           L    +      P   
Sbjct: 935  TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RGT  H ++  L      K        + +I                       ++  
Sbjct: 993  LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037

Query: 866  SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                H          +F         +   + I      ++G  DRI + +S  V I DY
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRREVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096

Query: 919  KTGDNPKK--ETAQKLIDPQLSLEAAALK 945
            KT   P K  E        QL+L    L+
Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125


>gi|260202354|ref|ZP_05769845.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289444772|ref|ZP_06434516.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289417691|gb|EFD14931.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
          Length = 1101

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 118/1098 (10%), Positives = 253/1098 (23%), Gaps = 144/1098 (13%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58
            ++  V    P          A    T+     +   N       V     T++A     +
Sbjct: 27   EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 86

Query: 59   ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
             +RS    + G        +   P++ +        F   LL  Y L  P+    RLL  
Sbjct: 87   RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 141

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
              L  +  + +      L  +   +   S    +W    L + +           +L  L
Sbjct: 142  TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 199

Query: 173  KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +      +                      L        ER+             +  R
Sbjct: 200  VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 259

Query: 217  AEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269
              A         +     +++     +  A   ++S++      +G  +    D      
Sbjct: 260  LAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 319

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             W   +  +    +++   S      + +LL       + ++    +S E   RS+ +  
Sbjct: 320  GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSVAVRA 379

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLD 383
                                P        V      + + E   IA  LR       +  
Sbjct: 380  LR------------------PRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADG 421

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                 +A++      A  +   L   GI  ++     L +    + + ++L  +      
Sbjct: 422  VKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAG 481

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVA------LRGNKNSYDIMDLKSLVLDRIA 497
             A   ++  P  + G  +      +                   +  +      + D I+
Sbjct: 482  AAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASVDADNPCLADAIS 541

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
               +                     L   +   +  LV            +  S      
Sbjct: 542  DPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGG 601

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGK------------------------TLSSLFSKIIE 593
                +++                                             ++    ++
Sbjct: 602  WAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQ 661

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
              +   A  +EW  +    +        + +SS L     L   L              +
Sbjct: 662  VLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVL 721

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPT 710
                 A    LS  +     L    +   +    +         +             P 
Sbjct: 722  DTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPR 781

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR-- 768
              S +L  L  +                       D             +P      R  
Sbjct: 782  GPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRG 841

Query: 769  -----------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                               S ++I        A ++  +  L              RG  
Sbjct: 842  DVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLA-ERAHAARGAPARGLP 900

Query: 812  FHNIITELIKKRINKNT------------PEINHLMKQII---------DSHFEKENLPP 850
             H  ++ L++   +               P+ +  +                       P
Sbjct: 901  NHLSVSSLVELVGDPVGARQRLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLP 960

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
                       +++           ++     V +P +M I      + G  D + +   
Sbjct: 961  GAADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVFVDPD 1018

Query: 911  GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
            G   + D+KTG  P    A +    QL++   A    +        V   FY  ++    
Sbjct: 1019 GGATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VRSGIT 1075

Query: 971  IDCITNDKKKYSADELSE 988
            +           A  L++
Sbjct: 1076 VVPDELPAPGELAMLLTD 1093


>gi|306842786|ref|ZP_07475427.1| double-strand break repair helicase AddA [Brucella sp. BO2]
 gi|306287059|gb|EFM58567.1| double-strand break repair helicase AddA [Brucella sp. BO2]
          Length = 1180

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 101/927 (10%), Positives = 227/927 (24%), Gaps = 99/927 (10%)

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL--ILIWRNKLPDIIKDLY 131
            +L  +  + +  ++     L +    +       +L  L ++  +      L        
Sbjct: 241  LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKVSGLPDRIAVLRAAFLKST 300

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E      +  A    L     +  D      E   + L  L   +     L A   +  
Sbjct: 301  GEPKSGSYVCSAAVKKLLPEFEEEFDAAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
              + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358  LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243  ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +++                      V +         G            I+ +++N  
Sbjct: 418  WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283  SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                  S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478  LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
                +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538  EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589  DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A L+K PL  +     +                  +       + +   ++  +N     
Sbjct: 649  AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  +      A      +L  + P      ++       +           L+ +  
Sbjct: 709  PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                    L    +   + ++ +     G+ +             L+D  +      ++ 
Sbjct: 767  AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTQSRAP 814

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L               L     +              +R  +    L        +   
Sbjct: 815  KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                  GTR    T      +     S      +       +    +      +  +   
Sbjct: 875  IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
             +     +   +P       PR  + S    LI             +             
Sbjct: 935  TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDVSSPVLEPGTGAPAF-AL 993

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
             RGT  H ++  L      K        + +I          P    +      H I   
Sbjct: 994  RRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD------WPDAERLRAWQSVHAILDD 1047

Query: 867  FLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
                          +F         +   + I      ++G  DRI + +S  V I DYK
Sbjct: 1048 ---------PRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDYK 1097

Query: 920  TGDNPKK--ETAQKLIDPQLSLEAAAL 944
            T   P K  E        QL+L    L
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELL 1124


>gi|322391964|ref|ZP_08065428.1| exonuclease RexB [Streptococcus peroris ATCC 700780]
 gi|321145190|gb|EFX40587.1| exonuclease RexB [Streptococcus peroris ATCC 700780]
          Length = 1091

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 115/927 (12%), Positives = 243/927 (26%), Gaps = 143/927 (15%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + L +I   I T +  + DL +L +              +  + Y  +        S
Sbjct: 113 QFIQQLIEIYHEISTAKMSFLDLESLTDADKRSD---LLLIFEKITAYLNQ-----GQVS 164

Query: 207 PVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                  L+ A  ++      +K  ++I G T        L+  +     G  ++ G+  
Sbjct: 165 QGSPLSYLIDAIEKNNVSSDFSKIALVIDGFTRFSAEEEHLVDLLHR--KGVEIIIGV-- 220

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                        +    +S+ +     Q S+ + L  L  K                + 
Sbjct: 221 -----------YATKKAYNSSFSEGNLYQASV-EFLRHLSSK-------YQTKAGDACQE 261

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-- 382
                +F           D  E  +    K   D+ +      +EE   +A ++R  L  
Sbjct: 262 HKNLDAFAKASKLLESAYDYSEISLEVDAKDREDLQIWSCLTHKEELELVARSIRQKLHQ 321

Query: 383 --DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
             + + K   ++  D    +        ++ I   +     ++    +  + S+      
Sbjct: 322 ESELSYKNFRILLGDVESYKLSLQTIFNQYQIPFYLGKSESMAHHPLTQFVESIGRLKRY 381

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                 +  L++  L             +                +   K         +
Sbjct: 382 YFRQEDLINLLRTGL-------YTDLSQEEIDSFEQYLRYLGIDGLSSFKQEFTKNHREK 434

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
            +   +   + R+    + L      +    +     +  +   T    ++S+  ++   
Sbjct: 435 FDLVKLNELRVRVLSPLETLLSSRKQNAENILAKWNNFLKDSFVTKKLQNLSETMEVADQ 494

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
             Q               EE  K    +  +        +    +++ ++   +     +
Sbjct: 495 ERQ---------------EEVWKAFCHVMEQFATVFEGTQVALDDFLALLHSGMSLSNYR 539

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                  T+ +        L  D +   GL +   PK       LS   +  LN  T + 
Sbjct: 540 TIPATVDTVLVQSYDLIAPLTSDLIYAIGLTQEHLPKIAQNTSLLSDEEREVLNQTTQDG 599

Query: 680 YIGQAAHD-------FEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLG----- 723
                A         + M +      + L+ +     N   +  S +L+ L   G     
Sbjct: 600 SQLLIASHENLKKNRYTMLSLVNSAKKQLVLSAPSLLNENESKESVYLKELQDFGFTKIE 659

Query: 724 -----------------------------GTDFFDNLKKRGQCYLDWT--RKLDYTTKQP 752
                                        G              L     RKL+      
Sbjct: 660 KRINRKNLSKDDIGSYHSLLSSLVAYHQQGESETSEQDLTFIKVLARVMGRKLEDQGLDN 719

Query: 753 HYKRPKPF-----------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                 P               + Q    S S + +   + Y+ + R +L L      + 
Sbjct: 720 PVLPTSPKSKTLATETLEVLYPKNQDFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EELRL 777

Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHL 859
            PD    G   H I    +K   + +              +  F+            + +
Sbjct: 778 RPDARSHGNFLHRIFERAMKLPADTSFDRRLEQAISETSQEREFQAIYQESLEAQFTKEV 837

Query: 860 FHKISHS---FLEHEEKIQSSIEKIFV---NIPAKMAIESIGIHLTGFADRIDLLKSGFV 913
              ++ +    L H  +I++  E+                  +++ G  DRID LKS   
Sbjct: 838 LLDVARATGHILRHNSEIETIQEEAVFGGKEQAFVQLDNGRNVYVRGKVDRIDRLKSSEA 897

Query: 914 D-ITDYKTGDNPKKET-----AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
             + DYK+                 ++ QL    AALK    S           Y+ + +
Sbjct: 898 IGVVDYKS----SVTQFNFPLFYNGLNSQLPTYLAALKKEGNSDF-----FGAMYLEMAE 948

Query: 968 KFKIDCITNDKKKYSADELSEKSLKNL 994
             +         K  A+       + L
Sbjct: 949 PVQSLQKFKTLSKALAETSKSMKYQGL 975


>gi|154250594|ref|YP_001411418.1| double-strand break repair helicase AddA [Parvibaculum
            lavamentivorans DS-1]
 gi|154154544|gb|ABS61761.1| Double-strand break repair helicase AddA [Parvibaculum
            lavamentivorans DS-1]
          Length = 1156

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 101/917 (11%), Positives = 222/917 (24%), Gaps = 93/917 (10%)

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
             I +L +         L      +   +   R    AR            I       P 
Sbjct: 244  EIAALPEAAMHNAAEVLASGTKTDVKCAEALRAFLGARASRAENLDTYLGIFLTKEMKPR 303

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
            +  ++ A A        +++   E   +    L A+   +                + + 
Sbjct: 304  ARLVTAALAKKHPDVEQELLAEQERIIRLHARLRAIGVAEATE---AIVTLAVEILETFD 360

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAGSTGSIPATARLMST 248
            +                         M              I+I  +  + P    +++ 
Sbjct: 361  KAKHARALLDYDDLISKTRDLLTMRAMAPWVLYKLDGGIDHILIDEAQDTSPEQWDIIAR 420

Query: 249  VAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---THPQYSLA 297
            +A+              +    D       +        +            +  ++   
Sbjct: 421  LADEFLSGSGARGVVRTIFAVGDEKQSIFSFQGADPARFDDMKIYFERRVKASEQRWDYV 480

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD----------MRNTDILEN 347
             L        E +  +  V   +  RS + +   L    +               +  E 
Sbjct: 481  PLTRSFRSVPEVLAAVDKVFESLKARSGLTASGNLDIHIAHRELDAGLVEIWELEEPDEG 540

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD------------ENKKKSALITAD 395
            +  +      D  + EA    + A  IA  +R  LD                   L+   
Sbjct: 541  QEASPWDAPLDY-MTEAAPMAKLAARIAATIRNWLDSKEVLISKGRPIRAGDILILVRRR 599

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
                  +   L   G+ +  +  + L+  L    L +L   +    D + +AT++K P A
Sbjct: 600  NAFVGEMVRHLKELGVPVAGADRMVLTEQLAVMDLLALARFVLLPEDDLTLATVLKSPFA 659

Query: 456  KFGFPEKYLSRAKN-ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
             F   E +            +L+            +  L R+  + +      + + +  
Sbjct: 660  GFTEEEVFDLAWNRKGTLWQSLKEKATRNPRYAEAAAFLLRLLERADYEPPYEFFAHVLG 719

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             +     LL     +   P+  + +           +   +  V  L+            
Sbjct: 720  GEGGRTRLLARLGPEAADPIDEFLSLALEFERKHPPA--LEAFVHWLERGSS-------- 769

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                     +     +  +    +  +  + ++     +      P       L  L  L
Sbjct: 770  --------EIKRDMDQGRDEVRVMTVHGAKGLEAEIVFMPDTCAAPGGSHDPALLSLPAL 821

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            E          +   +E                      L    +        +      
Sbjct: 822  EQDGPKLLLWPVRKKDEDEVSAGARA-------------LHREIQAAEYRRLLYVALTRA 868

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH- 753
            R  +Y    R    P+    +      L        L      +     +      +   
Sbjct: 869  RDRLYISGYRNATPPSSECWYEMVCETLKPAAREIVLPDGRMVWRIEGEQRRQVDSKAPS 928

Query: 754  -YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT-DRGTL 811
              + P   P    +      +  + L   P  +    + +   +     D      RG+L
Sbjct: 929  AAEEPSAPPEWAHRDAPLEPTPSRPLA--PSRLPPEDLEEPSVLSPLAGDNTNRFRRGSL 986

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
             H ++  L      +        + Q               + I   +F  +  + + H 
Sbjct: 987  IHRLLESLPDMEPAERRAAARRFLAQPAH-----GIDEAAQNEIEAAVFRVLDDATIAHV 1041

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETA 929
                    +  V +   + +    + + G  DR+ + +   V I DYKT   P    E  
Sbjct: 1042 ---FGKGSRAEVPVAGTIELGGRPLLIAGQIDRLCVTED-SVTIIDYKTNRPPPQTLEAV 1097

Query: 930  QKLIDPQLSLEAAALKA 946
                  Q++   A L A
Sbjct: 1098 VPAYIGQMAAYRALLAA 1114


>gi|15610337|ref|NP_217717.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Rv]
 gi|15842787|ref|NP_337824.1| UvrD/Rep family helicase [Mycobacterium tuberculosis CDC1551]
 gi|31794378|ref|NP_856871.1| ATP-dependent DNA helicase [Mycobacterium bovis AF2122/97]
 gi|121639086|ref|YP_979310.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
            Pasteur 1173P2]
 gi|148663060|ref|YP_001284583.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra]
 gi|148824397|ref|YP_001289151.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis F11]
 gi|215405207|ref|ZP_03417388.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 02_1987]
 gi|215432160|ref|ZP_03430079.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis EAS054]
 gi|224991578|ref|YP_002646267.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
            Tokyo 172]
 gi|253800237|ref|YP_003033238.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435]
 gi|254365824|ref|ZP_04981869.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            str. Haarlem]
 gi|254552298|ref|ZP_05142745.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis '98-R604
            INH-RIF-EM']
 gi|260188244|ref|ZP_05765718.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|260206546|ref|ZP_05774037.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289448884|ref|ZP_06438628.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289555474|ref|ZP_06444684.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605]
 gi|289575916|ref|ZP_06456143.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289747014|ref|ZP_06506392.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
 gi|289755320|ref|ZP_06514698.1| helicase [Mycobacterium tuberculosis EAS054]
 gi|297635848|ref|ZP_06953628.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207]
 gi|297732844|ref|ZP_06961962.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN R506]
 gi|307085954|ref|ZP_07495067.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu012]
 gi|313660177|ref|ZP_07817057.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN V2475]
 gi|2827611|emb|CAA16666.1| PROBABLE ATP-DEPENDENT DNA HELICASE [Mycobacterium tuberculosis
            H37Rv]
 gi|13883113|gb|AAK47638.1| helicase, UvrD/Rep family [Mycobacterium tuberculosis CDC1551]
 gi|31619974|emb|CAD95318.1| PROBABLE ATP-DEPENDENT DNA HELICASE [Mycobacterium bovis AF2122/97]
 gi|121494734|emb|CAL73215.1| Probable ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
            Pasteur 1173P2]
 gi|134151337|gb|EBA43382.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            str. Haarlem]
 gi|148507212|gb|ABQ75021.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra]
 gi|148722924|gb|ABR07549.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            F11]
 gi|224774693|dbj|BAH27499.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
            Tokyo 172]
 gi|253321740|gb|ACT26343.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435]
 gi|289421842|gb|EFD19043.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289440106|gb|EFD22599.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605]
 gi|289540347|gb|EFD44925.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289687542|gb|EFD55030.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
 gi|289695907|gb|EFD63336.1| helicase [Mycobacterium tuberculosis EAS054]
 gi|308364573|gb|EFP53424.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu012]
 gi|323718065|gb|EGB27247.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551A]
 gi|328459972|gb|AEB05395.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207]
          Length = 1101

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 118/1098 (10%), Positives = 252/1098 (22%), Gaps = 144/1098 (13%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58
            ++  V    P          A    T+     +   N       V     T++A     +
Sbjct: 27   EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 86

Query: 59   ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
             +RS    + G        +   P++ +        F   LL  Y L  P+    RLL  
Sbjct: 87   RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 141

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
              L  +  + +      L  +   +   S    +W    L + +           +L  L
Sbjct: 142  TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 199

Query: 173  KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +      +                      L        ER+             +  R
Sbjct: 200  VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 259

Query: 217  AEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269
              A         +     +++     +  A   ++S++      +G  +    D      
Sbjct: 260  LAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 319

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             W   +  +    +++   S      + +LL       + ++    +S E   RS+ +  
Sbjct: 320  GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSVAVRA 379

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLD 383
                                P        V      + + E   IA  LR       +  
Sbjct: 380  LR------------------PRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADG 421

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                 +A++      A  +   L   GI  ++     L +    + + ++L  +      
Sbjct: 422  VKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAG 481

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVA------LRGNKNSYDIMDLKSLVLDRIA 497
             A   ++  P  + G  +      +                   +         + D I+
Sbjct: 482  AAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCLADAIS 541

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
               +                     L   +   +  LV            +  S      
Sbjct: 542  DPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGG 601

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGK------------------------TLSSLFSKIIE 593
                +++                                             ++    ++
Sbjct: 602  WAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQ 661

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
              +   A  +EW  +    +        + +SS L     L   L              +
Sbjct: 662  VLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVL 721

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPT 710
                 A    LS  +     L    +   +    +         +             P 
Sbjct: 722  DTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPR 781

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR-- 768
              S +L  L  +                       D             +P      R  
Sbjct: 782  GPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRG 841

Query: 769  -----------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                               S ++I        A ++  +  L              RG  
Sbjct: 842  DVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLA-ERAHAARGAPARGLP 900

Query: 812  FHNIITELIKKRINKNT------------PEINHLMKQII---------DSHFEKENLPP 850
             H  ++ L++   +               P+ +  +                       P
Sbjct: 901  NHLSVSSLVELVGDPVGARQRLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLP 960

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
                       +++           ++     V +P +M I      + G  D + +   
Sbjct: 961  GAADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVFVDPD 1018

Query: 911  GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
            G   + D+KTG  P    A +    QL++   A    +        V   FY  ++    
Sbjct: 1019 GGATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VRSGIT 1075

Query: 971  IDCITNDKKKYSADELSE 988
            +           A  L++
Sbjct: 1076 VVPDELPAPGELAMLLTD 1093


>gi|294993862|ref|ZP_06799553.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 210]
 gi|326902572|gb|EGE49505.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis W-148]
          Length = 1101

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 118/1098 (10%), Positives = 253/1098 (23%), Gaps = 144/1098 (13%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58
            ++  V    P          A    T+     +   N       V     T++A     +
Sbjct: 27   EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 86

Query: 59   ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
             +RS    + G        +   P++ +        F   LL  Y L  P+    RLL  
Sbjct: 87   RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 141

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
              L  +  + +      L  +   +   S    +W    L + +           +L  L
Sbjct: 142  TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 199

Query: 173  KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +      +                      L        ER+             +  R
Sbjct: 200  VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 259

Query: 217  AEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269
              A        ++     +++     +  A   ++S++      +G  +    D      
Sbjct: 260  LAATSPQVGRDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 319

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             W   +  +    +++   S      + +LL       + ++    +S E   RS+ +  
Sbjct: 320  GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSVAVRA 379

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLD 383
                                P        V      + + E   IA  LR       +  
Sbjct: 380  LR------------------PRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADG 421

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                 +A++      A  +   L   GI  ++     L +    + + ++L  +      
Sbjct: 422  VKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAG 481

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVA------LRGNKNSYDIMDLKSLVLDRIA 497
             A   ++  P  + G  +      +                   +         + D I+
Sbjct: 482  AAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCLADAIS 541

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
               +                     L   +   +  LV            +  S      
Sbjct: 542  DPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGG 601

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGK------------------------TLSSLFSKIIE 593
                +++                                             ++    ++
Sbjct: 602  WAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQ 661

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
              +   A  +EW  +    +        + +SS L     L   L              +
Sbjct: 662  VLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVL 721

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPT 710
                 A    LS  +     L    +   +    +         +             P 
Sbjct: 722  DTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPR 781

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR-- 768
              S +L  L  +                       D             +P      R  
Sbjct: 782  GPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRG 841

Query: 769  -----------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                               S ++I        A ++  +  L              RG  
Sbjct: 842  DVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLA-ERAHAARGAPARGLP 900

Query: 812  FHNIITELIKKRINKNT------------PEINHLMKQII---------DSHFEKENLPP 850
             H  ++ L++   +               P+ +  +                       P
Sbjct: 901  NHLSVSSLVELVGDPVGARQRLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLP 960

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
                       +++           ++     V +P +M I      + G  D + +   
Sbjct: 961  GAADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVFVDPD 1018

Query: 911  GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
            G   + D+KTG  P    A +    QL++   A    +        V   FY  ++    
Sbjct: 1019 GGATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VRSGIT 1075

Query: 971  IDCITNDKKKYSADELSE 988
            +           A  L++
Sbjct: 1076 VVPDELPAPGELAMLLTD 1093


>gi|289523886|ref|ZP_06440740.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans ATCC
            BAA-1850]
 gi|289502542|gb|EFD23706.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans ATCC
            BAA-1850]
          Length = 1191

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 95/808 (11%), Positives = 212/808 (26%), Gaps = 74/808 (9%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAG 234
            +          F  +    W E+    N  S             ++         I++  
Sbjct: 356  EDRPLRETLLKFASMLWALWEEQKKRKNILSFDDLLTKAKDMVNKYPKAVERYKYILVDE 415

Query: 235  STGSIPATARLMSTVANHPNGAI-VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
                      L+  +A    GA  +    D       +     +                
Sbjct: 416  FQDINGVQNLLIKNIAAGKEGATKLFIVGDLKQSIYRFRHADLRIFADYIEKAKSGAG-- 473

Query: 294  YSLAKLLDFLDIKREDVKRLGNV------SNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                 L +   + R+ ++R+ ++               +      P    +  ++  L+ 
Sbjct: 474  -KYVALKESFRMTRDLLERINDLFEYIWKDGISSSLKEIYEPLVYPETLKNENSSGDLKI 532

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKLE 405
             +    +         A  +   A  +A   RM  +     K   ++   RN    ++  
Sbjct: 533  LLETNAEDEDGNKASSAQRKNSLATKLAHRFRMFHEGGVFWKDMVVLVPTRNYFDTLEEA 592

Query: 406  LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
              R  I           +   +   T+LL A+    D  A+  ++  P  +        +
Sbjct: 593  FEREEIPAVFVDQRSFFSRSETLDATALLTALNNPEDDFALIGMLSSPFLRLSQERVSKA 652

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
             +    E    R  +     +   +  ++ +  +          + L EE   L  L  +
Sbjct: 653  LSSIEGEGGEGRIWRYLKTNLKGTAEKIEYLRRRAILRGPSDVLNYLLEEPLWLLALPSN 712

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
              ++  + +                  + K        +        P       G+   
Sbjct: 713  KRMRAFSNIRYLIHFLRGYED-----AFGKDLAGAADYLKKTARLNAPYEEATPLGEDED 767

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
             +    +     ++   +     +  L      +       ++F+     S    FD   
Sbjct: 768  VVRIMTVHAAKGLEFPVV----AVFGLEYARHPRSGSSLVPSIFVGTVASSYGDPFD--- 820

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
                 +   P   A +            LK  E+ +      +      +  +      E
Sbjct: 821  ----RKKNPPSKAAHDYLE--------GLKQEEENL---RLFYVACTRAKKHLILCGNYE 865

Query: 706  NNIPTIASR----WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK--- 758
             +     S+    WL+ +L   G   + +     +  +   +  D  +K+      +   
Sbjct: 866  IDSQGNPSKKTGLWLKTVLNWEGARRYADPDDIDEAEIITPKTSDAGSKKNKLSHSRGIS 925

Query: 759  ----PFPPLEAQPRTYSFSEIKQLINDP--YAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                  P  ++    +S +E   +   P  Y +  R+ L L +     ++    D G+L 
Sbjct: 926  LKKLIRPIADSPLDKFSATEYALISWCPHAYRMSCRQGLPLKWELPRSEEYGGPDVGSLV 985

Query: 813  HNIITEL---------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
            H I++                ++N      ++   +    + ++  P +           
Sbjct: 986  HWILSRWDLKEESLVRFFPENDENLERTLRMLPTGLRPILKDKSHWPLLQRWLTAFAGSF 1045

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
              S L      +    K +  IP    +ES    L G  D +  L      I DYK    
Sbjct: 1046 LGSTLRRILSSKDPEYKTYREIPFDFELESGT-RLAGQIDLL-YLDDATAHIWDYKI--- 1100

Query: 924  PKKETAQKL-----IDPQLSLEAAALKA 946
               E   +         QL     A+  
Sbjct: 1101 --TEDLDEGSFMELYRKQLEFYGYAVNR 1126


>gi|312140617|ref|YP_004007953.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311889956|emb|CBH49273.1| putative UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi
            103S]
          Length = 1116

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 114/1107 (10%), Positives = 272/1107 (24%), Gaps = 161/1107 (14%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGD 83
            +   +V       ++P     V     T++A Q+L +   +       S ++  +   G 
Sbjct: 44   MAARVVWLVANGLVDPE---QVLGLTFTRKAAQQLTARIRKRLAKLAGSALVRDLDPSGS 100

Query: 84   VVEEKFTADL------------LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            +      ++             L  + L  P+     LL    L  +    +     DL 
Sbjct: 101  LRSRILASEPEVSTYHAYAGRLLSEHGLLLPIEPSATLLSETELWQLAYRVVSAWDDDLD 160

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL------AA 185
             +   +      + + L+  LA+ +       +   +L  L +                 
Sbjct: 161  TDRNPASITE--SVLALSGQLAEHLVEPADLREAHTELDKLIHTLPAGPKQRGGPSKTLL 218

Query: 186  DFLKI---------ASKYWTERLVELNASSPVGYQIALMR-----AEAEHLMKGTKGPII 231
            D L++           +   + L    A           R      E     +     ++
Sbjct: 219  DLLEVQHQRLDLLPLVQRLADTLRREGALDFGSQMSLAARVASEHPEVGRSERARFRVVL 278

Query: 232  IAGSTGSIPATARLMSTVANHPN--GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            +     +  A   L+S++       G  +    D       W   +  +    +++   +
Sbjct: 279  LDEYQDTGHAQRVLLSSLFGGGEDAGLALTAVGDPMQSIYGWRGASAANLPRFATDFPLA 338

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                    +LL       E ++    +S  +  R + +SK                    
Sbjct: 339  DGTPAPKLELLTSWRNPPEALELANMISEPLRDRGVEVSKLR------------------ 380

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK------SALITADRNLARRVK 403
                    DV L   D    E   +A  +    +  +        +A++      A  + 
Sbjct: 381  ARPAAVPGDVRLALLDTVETERAWVADRIAEQYEAARVDGAKPPTAAVLVRRNADAAPIA 440

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
             EL   G+ +++     L  T   + + ++L  +       A   ++    A++      
Sbjct: 441  EELRARGLAVEVVGLGGLLHTPEVADVVAMLRLVADPMAGTAAVRVLTG--ARWQIGAAD 498

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
            +         + +R +  +   +   + + D + +              +  D   A   
Sbjct: 499  IRALWKRAGELGIRSDHGATGAVTDAAALDDALGSALPGEQSEQAGLADALADPGPAHRY 558

Query: 524  VDHILQCITPLVTYKTNKNSTCG--NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             +     I  +     +     G     +    +  +           +        E  
Sbjct: 559  SEAGYVRICAVAAELASLRERLGQPLTELVAEVERVIGIGIEAQARTRQSEVGGAGREHL 618

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
               + + S      S      + ++     + +G            + +L    ++ L +
Sbjct: 619  DAFADVVSGYANRTSATLTGLLSFLAAAEHVENGLAPGEVEVAPDRVQVLTVHSAKGLEW 678

Query: 642  DTLILGGLNEGVWPKNTAKNPFLS------------------------------------ 665
            + + +  L  GV+P + A   +L                                     
Sbjct: 679  EVVAVPHLTAGVFPSSQASATWLGSVAELPPTLRGDRAYPGESADGVPVLDLENLYHRKD 738

Query: 666  -RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT----RSLRENNIPTIASRWLQRLL 720
                        + + + +    F +A                     P   S +L  L 
Sbjct: 739  LEDAIKSHKDALSTRRLDEDRRLFYVALTRTERALFVSGHHWAESGADPKGPSPFLLELE 798

Query: 721  V---------LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
                      LG  D +      G               +    R +      A+    +
Sbjct: 799  ELVSTWEGERLGAIDVWAPAPDDGAENPLTATPRSALWPRDPLGRRRADVERGAELVRGA 858

Query: 772  FSEIKQLIN-------DPYAVYARRILKLDFIPHFKKD-------------------PDR 805
             + + +          DP    A     L                             D 
Sbjct: 859  LAGLGKAAPEPEAVDGDPDNWAADVDALLAERRERGHGGTDVEMPAQLSVSQLVDLAADP 918

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
                      +         + T     + ++   +     +  P           +++ 
Sbjct: 919  DALAARLRRPLPFPPNPLARRGTAFHAWVEQRFGATRLLDFDELPGAADTGVGTETELAL 978

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925
                      +    + V +P + ++      L G  D +     G   + D+KTG  P 
Sbjct: 979  LQDAFLRSPWADRSPVEVEVPFETSVAGT--VLRGRIDAVFADADGGWTVIDWKTGAEPS 1036

Query: 926  KETAQKLIDPQLSLEA-----AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
                ++ +  QL+              S       +        L +           + 
Sbjct: 1037 AAN-ERAVVMQLAAYRIAWAELMAARQSRLTGRPVEP------PLDKVRAAFHYVRTGRT 1089

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQP 1007
             + ++L +     L  ++T     E P
Sbjct: 1090 IAPEDLPDA--DRLARLITTAGAEETP 1114


>gi|317012198|gb|ADU82806.1| hypothetical protein HPLT_01840 [Helicobacter pylori Lithuania75]
          Length = 785

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 62/404 (15%), Positives = 135/404 (33%), Gaps = 57/404 (14%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +    AS  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEITLSYIESETSK---ASNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +                        ++S S +   +
Sbjct: 494 NLHTEPIKDAYTLFAPSPLKDYQEEEIKAAIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   + +    P  +     +  G+L H ++ E  +   +KN   +   +  ++
Sbjct: 540 TCKRRFYYHYMKRFKESPKDE---SNSAVGSLLHELLKEAYE--KDKNPYALEERLIWLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    +EN+ P   +       KI  +F   E++   + I  + +    +  I+  G+  
Sbjct: 595 E---TRENITPKERLDTLVALKKI-QAFYLKEKERFKAKITILDLEKSFETIIQ--GVVF 648

Query: 899 TGFADRIDLLKSGFVDITDYK------------T---GDNP------KKETAQKLIDPQL 937
            G  DRID      + + DYK            T   G +P        +  Q   D Q+
Sbjct: 649 KGRIDRIDKTADNEIILLDYKFKSDLKLDNMSKTQREGLSPIEIAQISTDYQQISTDYQM 708

Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
           ++ A ALK   +      +    F+  L++   ++      +  
Sbjct: 709 AIYAFALKNLGYK-----EPIKAFFYDLRKGELLEEDELTLQAK 747


>gi|256060066|ref|ZP_05450248.1| ATP-dependent nuclease subunit A [Brucella neotomae 5K33]
 gi|261324043|ref|ZP_05963240.1| double-strand break repair helicase AddA [Brucella neotomae 5K33]
 gi|261300023|gb|EEY03520.1| double-strand break repair helicase AddA [Brucella neotomae 5K33]
          Length = 1180

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%)

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131
            +L  +  + +  ++     L +    +       +   LE A  +      L        
Sbjct: 241  LLADLWPVLEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300

Query: 132  PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             E      +  A    L     +  D      E   + L  L   +     L A   +  
Sbjct: 301  GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
              + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358  LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243  ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +++                      V +         G            I+ +++N  
Sbjct: 418  WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283  SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                  S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478  LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
                +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538  EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589  DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A L+K PL  +     +                  +       + +   ++  +N     
Sbjct: 649  AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  +      A      +L  + P      ++       +           L+ +  
Sbjct: 709  PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                    L    +   + ++ +     G+ +             L+D  +      ++ 
Sbjct: 767  AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L               L     +              +R  +    L        +   
Sbjct: 815  KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                  GTR    T      +     S      +       +    +      +  +   
Sbjct: 875  IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805
             +     +   +P       PR  + S    LI           L    +      P   
Sbjct: 935  TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RGT  H ++  L      K        + +I                       ++  
Sbjct: 993  LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037

Query: 866  SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                H          +F         +   + I      ++G  DRI + +S  V I DY
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096

Query: 919  KTGDNPKK--ETAQKLIDPQLSLEAAALK 945
            KT   P K  E        QL+L    L+
Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125


>gi|222110699|ref|YP_002552963.1| exonuclease-like protein [Acidovorax ebreus TPSY]
 gi|221730143|gb|ACM32963.1| exonuclease-like protein [Acidovorax ebreus TPSY]
          Length = 856

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 104/772 (13%), Positives = 206/772 (26%), Gaps = 77/772 (9%)

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            L+   A     A  +              +   + +  +     +         L    
Sbjct: 117 PLLEMAAQLAVVAAAVAPGRRPDWGEAARALLPAAGDGGALRLEAAAARIALEWVLASRH 176

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV-ALI 362
                    +      +                       ++ +    +    + V  L 
Sbjct: 177 VGDVLFESGVRAAVPLLVVVQGFQPDPLARTLAQHWAEAGLVVDLPQVMDGGKAGVPTLH 236

Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
              +  +EA   A  +   L + +   AL+  DR L RR+   L   G+ +    G  LS
Sbjct: 237 AVPDAEDEAQRAAACVLQHLAQGQAPVALVANDRALTRRISALLAGAGVAVHDENGWLLS 296

Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
           TT  ++ L ++L A        A+   +K               A  ALE    R     
Sbjct: 297 TTHAAARLMAVLQAGAWDATADAVLDWLK-------QSPAVDGAALRALEHWLRRAGARH 349

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
           +     +   L      +          R            +  +   +     +   + 
Sbjct: 350 WSGAVTQLQALAERRPAEAALADQVQAWRAQLRAARPLAQWLQSLRVLLQDCGLWDGLQQ 409

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
              G   +++        LQ+   D                           G+  +   
Sbjct: 410 DEAGARVLAEL--RLPEGLQDDLQDMD-------------------------GAGARMAL 442

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            ++   +  +++    +P     + + +L   +     F  L+L G +E           
Sbjct: 443 ADFTRWVGEVLECARYRPAYVDDAPVVVLPLPQLLARPFAALVLPGCDEKRLQAAPEPPG 502

Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRENNIPTIASRWLQRLLV 721
             ++  +  L L T +         +  A     + +  R   E   P + S  +Q L +
Sbjct: 503 PWTQAQREGLGLPTRDLLAAAQRAAWRQALRIARVDLLWRVGDEGGEPLLPSPLVQALRL 562

Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
            G      + +            +  +       RP P    +   +  S S    L + 
Sbjct: 563 DGTGTDGADPR------------VTRSVPVAPTARPLPVGA-QLPVQRLSSSAYSDLRHC 609

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH-------L 834
           PY  +A R L+L          D+ D GT  H ++    +   +  T +           
Sbjct: 610 PYRFFALRQLQLQEDDELDAGLDKRDFGTWLHAVLQHFHEALQDAPTGDAAARTALMDEA 669

Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
             +       +E         W  L         +HE       +        +      
Sbjct: 670 AARATRELGLQEGDFLPYASGWPALRAGYLEWLGKHEAAGACFRQ-----AELRARQPLG 724

Query: 895 GIHLTGFADRID-LLKSGF----VDITDYKT-GDNPKKETAQKL-IDPQLSLEAAALKAG 947
            + L G  DR+D +   G       + DYKT  D   +   +    D QL+  AA L+  
Sbjct: 725 ALELVGTLDRVDAVRPQGGGEPLTLVIDYKTESDALTRGRIKAGAEDTQLAFYAALLQD- 783

Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
                         Y+ + ++ +      D   +  D L      ++  I  
Sbjct: 784 --------DTLRAAYVNVGERGETRLHEQDDVVHLRDLLLGGITHDMQRIAA 827


>gi|317180744|dbj|BAJ58530.1| hypothetical protein HPF32_0948 [Helicobacter pylori F32]
          Length = 777

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 64/398 (16%), Positives = 137/398 (34%), Gaps = 50/398 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ ++ +    E +     S  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMVLSYIESETSKV---SNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +    T                   ++S S +   +
Sbjct: 494 NLHIEPIKDAYTLFEQTPLKDYQEEEIKATIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +   + +  G+L H ++ E+ +   +KN   +   + Q++
Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSTVGSLLHELLKEVYE--KDKNPYALEERLIQLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    + N+ P   +       KI  +F   E++   + I+ + +    +  I+  G+  
Sbjct: 595 E---TRGNITPKERLDTLIALKKI-QAFYVKEKERFKAKIKILDLEKSFETTIQ--GVAF 648

Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID      + + DYK               G     E AQ   D Q+++ A AL
Sbjct: 649 KGRIDRIDKTADNGIILLDYKFKSELKLDNMSEKQRGSLSPIEIAQISADYQMAIYAFAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
           K   +           F+  L++   ++     + K  
Sbjct: 709 KNLGYKGS-----IKAFFYDLRKGKLLEEEPVLQAKMD 741


>gi|86160293|ref|YP_467078.1| hypothetical protein Adeh_3877 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776804|gb|ABC83641.1| hypothetical protein Adeh_3877 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1151

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 150/1096 (13%), Positives = 303/1096 (27%), Gaps = 156/1096 (14%)

Query: 12   APSSPFFREMIPALLNGTLVENFR------YDPLNPLLLASVTIYVPTKRAIQELRSEFI 65
            A  SP  R ++ A +N T+++              P  L + T+ VP++R    LR E  
Sbjct: 30   ACRSPAVRSVLEARVNVTVIDTLGDWADAVAALPAPGPLPARTVLVPSERHAHALRRELA 89

Query: 66   EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125
              TG+ + +       G       TA + +      P +  +  L  ARL+ ++   LP 
Sbjct: 90   R-TGRDAALA------GTRFLGPLTAAIEVLQAAGVPFTPGEGALRPARLLALFHEDLPL 142

Query: 126  IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA--LKNEKYGMWWLL 183
               DL                   +  A  I  +E       DL A           W  
Sbjct: 143  EHFDLDL---------LRTTRGWDEAFAGAIGDLEAAGLAPRDLPAEPAAARDLARLWSR 193

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243
                         E     + SS   ++ A      +       GP +   S  +    A
Sbjct: 194  V------------EDGAGTSFSSARIFREAAALLARDAGAWPFHGPTLALASGHADAVEA 241

Query: 244  RLMSTVA--------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
            R +  +         + P G   L  ++        + +  + +  +            +
Sbjct: 242  RFLRAIPGVRLAVQTDRPAGERHLERVERLFGAEARSALAARGSTGSPRAEEDRDRAVRT 301

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
             A+                  S         +  ++L  D + + +     +  P+    
Sbjct: 302  PAR-----GSTGSPRAGGPGSSPAGRVTERDLLATYLLADAAVLADPARPRSGGPDGTVD 356

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI---- 411
              + A +EA+ E   A+ +A  +  +    ++ + L+     LA  V   L R       
Sbjct: 357  LEEHAGVEAELEAT-ALWVARQVLEARRPLEEIAVLVPDQDPLAGLVADRLARLPFDGGP 415

Query: 412  -NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
              + ++ G+P  +T   + + +++ A+        +A ++   L   G  +   +   + 
Sbjct: 416  LPVFVAGGLPAISTAAGARILAVVRALRSHLSAETLAPVL-PALRLEGVVDGDRTHLTHG 474

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
              +    G           +  L                      D + A      + + 
Sbjct: 475  EAMELAFGLGIVGGNPAHPAGALAWSGRAAARAGELEAALAQVHADDDSAERERWRLERT 534

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +  L   +   ++  G                 +     R L                  
Sbjct: 535  LGSLRAIRPALDALVGVARAVVEGAPLAAIGDVLGGFLTRCLLAPGEGAALPARLVEALA 594

Query: 591  IIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                GS     +  + + ++   + G  V         +++     +  ++F  + + GL
Sbjct: 595  PACAGSLGKALSGDDALQVVEDQLLGLRVAQGRFGEPAVYVGTVAGAAGVSFGAVRIVGL 654

Query: 650  NEGVWPKNTA-----------------KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
             EGV P                      +  L R          A     + A D  +A 
Sbjct: 655  CEGVLPSQPREDPVVPGALREQLERGAPDRVLRRAEDRVAAQAHALVAAVRGARD-AVAL 713

Query: 693  GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW----------- 741
                +   R+ RE     I +               + +        D            
Sbjct: 714  SAPRVDLARTEREPGAIFIDAAAALARPHAATGAPAEAVPDGAALRRDAFRPAASAAARF 773

Query: 742  --------TRKLDYTTKQPHYKRPK----------------------------------- 758
                       LD   +      P+                                   
Sbjct: 774  RDAHPISDASWLDRVARTAPALPPEWTGTPVVDLARLAALRAPSGPLGPSDGIFDRGGPF 833

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI--PHFKKDPDRTDRGTLFHNII 816
            P  P  A  R  S S + QL+  P     RRIL  D        ++ D    G+L H ++
Sbjct: 834  PPVPGIAPERPISASALGQLLQCPRLFLMRRILGWDEPASAPSLRELDPLSFGSLLHRVV 893

Query: 817  TELIKKR----------INKNTPEINHLMKQIIDSHFEKENL-PPHIDIIWRHLFHKISH 865
                ++           + +       +  +  D    +  L    + +  R   H    
Sbjct: 894  ELFYREHGAAFSRREGRLARWLELARGVADRAFDGLLSEYPLVGEGVRLKERERLHDALR 953

Query: 866  SFLEHEEKIQSSIEKIFVNIPA-------KMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
             FL ++ K       + V +P         +  +   +H+ G+ DR+D  + G   + D 
Sbjct: 954  EFLAYDWK-GGPRRFVGVELPFGTPEAPLSVEADGETLHVHGYIDRVD-AEDGVTLVRDL 1011

Query: 919  KTGDNPKKETAQKL----IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
            K+G    +  ++       D QL L   A +  +       KV    Y     + +++  
Sbjct: 1012 KSGKAHPRAGSEAGPTALRDVQLGLYQLAARKLARRWGTPAKVHGA-YAYASGRGEVEER 1070

Query: 975  TNDKKKYSADELSEKS 990
                   + ++ + + 
Sbjct: 1071 AFRADAGALEQATAEW 1086


>gi|306782246|ref|ZP_07420583.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu002]
 gi|306794956|ref|ZP_07433258.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005]
 gi|306799158|ref|ZP_07437460.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu006]
 gi|308325002|gb|EFP13853.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu002]
 gi|308336739|gb|EFP25590.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005]
 gi|308340579|gb|EFP29430.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu006]
          Length = 1101

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 119/1098 (10%), Positives = 255/1098 (23%), Gaps = 144/1098 (13%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58
            ++  V    P          A    T+     +   N       V     T++A     +
Sbjct: 27   EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 86

Query: 59   ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
             +RS    + G        +   P++ +        F   LL  Y L  P+    RLL  
Sbjct: 87   RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 141

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
              L  +  + +      L  +   +   S    +W    L + +           +L  L
Sbjct: 142  TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 199

Query: 173  KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +      +                      L        ER+             +  R
Sbjct: 200  VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 259

Query: 217  AEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269
              A         +     +++     +  A   ++S++      +G  +    D      
Sbjct: 260  LAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 319

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             W   +  +    +++   S      + +LL       + ++    +S E   RS+ +  
Sbjct: 320  GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSVAVRA 379

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLD 383
                                P        V      + + E   IA  LR       +  
Sbjct: 380  LR------------------PRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADG 421

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                 +A++      A  +   L   GI  ++     L +    + + ++L  +      
Sbjct: 422  VKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAG 481

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVA------LRGNKNSYDIMDLKSLVLDRIA 497
             A   ++  P  + G  +      +                   +         + D I+
Sbjct: 482  AAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCLADAIS 541

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT----------NKNSTCGN 547
               +                     L   +   +  LV                    G 
Sbjct: 542  DPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGG 601

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPN------LWFEEEGKTLSSLF--------SKIIE 593
             +  +        +         +         L + +  +   +             ++
Sbjct: 602  WAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVAENGLPPAELTVACDRVQ 661

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
              +   A  +EW  +    +        + +SS L     L   L              +
Sbjct: 662  VLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVL 721

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPT 710
                 A    LS  +     L    +   +    +         +             P 
Sbjct: 722  DTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPR 781

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR-- 768
              S +L  L  +                       D             +P      R  
Sbjct: 782  GPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRG 841

Query: 769  -----------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                               S ++I        A ++  +  L              RG  
Sbjct: 842  DVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLA-ERAHAARGAPARGLP 900

Query: 812  FHNIITELIKKRINKNT------------PEINHLMKQII---------DSHFEKENLPP 850
             H  ++ L++   +               P+ +  +                       P
Sbjct: 901  NHLSVSSLVELVGDPVGARQRLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLP 960

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
                       +++           ++     V +P +M I      + G  D + +   
Sbjct: 961  GAADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVFVDPD 1018

Query: 911  GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
            G   + D+KTG  P    A +    QL++   A    +        V   FY  ++    
Sbjct: 1019 GGATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VRSGIT 1075

Query: 971  IDCITNDKKKYSADELSE 988
            +           A  L++
Sbjct: 1076 VVPDELPAPGELAMLLTD 1093


>gi|332981096|ref|YP_004462537.1| UvrD/REP helicase [Mahella australiensis 50-1 BON]
 gi|332698774|gb|AEE95715.1| UvrD/REP helicase [Mahella australiensis 50-1 BON]
          Length = 993

 Score =  138 bits (347), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 127/1034 (12%), Positives = 269/1034 (26%), Gaps = 136/1034 (13%)

Query: 42   LLLA---SVTIYVPTKRAIQELRSEFIEIT------GKKSTILPI--------IKSLGDV 84
              LA    +     T+RA  E+     +        G K     +        I ++   
Sbjct: 42   ERLANIDEIVAITFTERAAAEMSERIRKAADDEMKSGDKDYWSDVKERLTTAYISTIHSF 101

Query: 85   VEEKFTADLLLSYNLN--PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                     + +        VS  Q  + L   I        +         PL +    
Sbjct: 102  CGRLLREHPVEAGVDPFFDVVSPAQADIWLDEAIAKAVADALEPTGAPDVR-PLIMRYGF 160

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                   K L   I        +      +               L  + + ++ER    
Sbjct: 161  DKLCVNIKALYKQIRDCGFLIAEAAKNTDMGQPD----AEAVIYILTASEENYSERKRVA 216

Query: 203  NASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
            N+      Q   +        + L       +++           RL+ ++A    G  +
Sbjct: 217  NSLDYEDMQRKAVELLQMPAMKDLYNHRFKFLMVDEGQDINYIQYRLIMSIAG-NEGCRL 275

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
                D       +     +  +  + + + +   + ++A+    +    + V R  +   
Sbjct: 276  FAVGDAKQSIYRFRGSQVELFDKIAEDISANGGRRLTMAENFRSVGGIIDFVNRRFDSLM 335

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            + Y       K         +              +  +    I    ER EA+    A 
Sbjct: 336  DRYEAVKPARKDHGYISVEILPVDVKGSIDSRKQAEADALARRIAHMVERREAVIYDDAS 395

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                       A++   R      +    R+GI     +G           + ++L +I 
Sbjct: 396  GTFRAPRYGDIAVLFQKRTHLLPFEDAFERYGIPYQEISGGSFYDCQEIKDMINVLTSIA 455

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
              +D +A+   +K   A FG  ++ L    N   +  +                      
Sbjct: 456  HPSDIIALVGTLK---AFFGVSDEALLVMANCGGIPYV---------------------- 490

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                               +    L D     I+    Y          ++ISD  +L +
Sbjct: 491  ------------------LDDTDRLPDAYRMPISRAAGYMAKWRGMADTMNISDIVQLVL 532

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                       ++          K      +        +    +  I  +    D    
Sbjct: 533  DDSGYEKRLASQRGGAHMISNVWK--FCDMATSAAHSGMLIDEFLMRIRAMADTADEGEA 590

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA------------KNPFLSR 666
              +++ +  + I+    ++ L F   ++  ++      N               +     
Sbjct: 591  PLELDGNDAVSIMTVHSAKGLEFPVAVIPDMSSMFRNDNPPMIFDVDKGIAIKPDGDSKG 650

Query: 667  VMQSDLNL-KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
                D+    + E+        +      +  +   S   +        W + L   G  
Sbjct: 651  SKWQDIKDKLSKEQQQEYMRLMYVAFTRAKDRLILSSDDVDTTKQRQPSWWKWLKDSGIL 710

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
               +N        LD                       E   R    + +   +  P   
Sbjct: 711  PAQNNPLPETAAALDGAEAPVKHDGIDQTVIIAEGIAPELVYRP--VTPLITYMQCPRQY 768

Query: 786  YARRILKLDFI----------PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            Y   +L+LD                +       G + H+I  +L K             +
Sbjct: 769  YYEYVLQLDSEWFATPDTGVIGGHAEGLSAVQIGDIVHSICEKLKK----------ADEI 818

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
              +ID      +    +          +  S+ E         +++ V +P  M ++   
Sbjct: 819  DALIDEALNGLDASIQLRE----RIRNMVVSYAESPYFS-GDTDEVKVELPFIMRLD-EN 872

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTG--DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            I L G  DR+ ++K G   I D+KTG  D    E+      PQL+  A A +      + 
Sbjct: 873  IVLVGRIDRM-IIKDGHATIVDFKTGFVDADNIESISMEYMPQLAAYAMAARQ-----VF 926

Query: 954  CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN--GEQPFISH 1011
               V +     L+         +        E  +++ +  ++ V ++++  G   F   
Sbjct: 927  GFVVDDAVIYYLEPNIAYKVDIS-------PEAIDEARRRFVDAVKVIESAKGMDDFP-- 977

Query: 1012 LRLSEKSNIQSEYD 1025
               S +   +  Y 
Sbjct: 978  --PSYRHCGRCGYK 989


>gi|258616340|ref|ZP_05714110.1| exonuclease RexB [Enterococcus faecium DO]
          Length = 919

 Score =  138 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 102/860 (11%), Positives = 226/860 (26%), Gaps = 131/860 (15%)

Query: 214 LMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
            +   A ++       +  I++G +       +L+  +       + L  LD      + 
Sbjct: 1   ALSILANYMQTQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-LDRPYTADLP 59

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
             +T            + +  +  +  L+D      E  +                  + 
Sbjct: 60  EVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP-----------------TE 100

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKK 388
           L    +    T   +    +       + L EA+N  EE   +A+ +R  +   +   + 
Sbjct: 101 LQLLQTMWEETSSQKKAAVHKLGGQEHLHLWEAENPTEEVRQLAVEIRRLVSEENYRYRD 160

Query: 389 SALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
             ++T + +L   +         I   I     +        + SL            I 
Sbjct: 161 IQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDRYSYRLSDIM 220

Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSLVLDRIATQK 500
              K  L      E  L   K   +    +           +Y           +     
Sbjct: 221 RFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTREKDWQFVAYD 280

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI---SDWTKLT 557
                      L E+   +  L    +   +  +   KT + +          S   +  
Sbjct: 281 FEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKKSKTGQEAANVFYQFLIQSGVQQQL 340

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
           +          + +      E+    L  L  + +        +   + +IIT  ++  +
Sbjct: 341 LFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEIITSGLENLS 399

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                     + I      R          GLN+ V+P        LS   +  LN    
Sbjct: 400 YGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEEREVLNQALP 459

Query: 678 EKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLVLG-- 723
           +                        +GT  L  + +   + +     S +L+R+      
Sbjct: 460 DGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYLRRITEYLSV 519

Query: 724 ----------------------------------GTDFFDNLKKRGQ---------CYLD 740
                                               D    + K  Q          + +
Sbjct: 520 PVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKELVLNSSWRN 579

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYARRILKLDFIP 797
           +  ++  + +  +     P    E         S S ++   N  Y  + +  LKL    
Sbjct: 580 FALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQFGLKLKER- 638

Query: 798 HFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDSHFEK---EN 847
                      G  +H  +    K         +N +  +     ++++   F +   E 
Sbjct: 639 -TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDTQRRDFTEKVLQEVFGELRFEI 697

Query: 848 LPPHIDIIW-RHLFHKISH--SFLEHEEKIQSSIEKIFVNIPAK----------MAIE-- 892
           L     + + R+   +     ++   ++   + +  +   I             + +   
Sbjct: 698 LDSSARMNYIRYQLGQTIQKVAWALQKQSKNTGMHPLQTEILFGQIAGAKGITGLELPLS 757

Query: 893 -SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLSLEA--AALK 945
               +H+ G  DRID+        + + DYK +G +     A   +  QL      A + 
Sbjct: 758 NGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLLTYLDVALMD 817

Query: 946 AGSFSQIDCRKVANLFYIRL 965
           A   +     K A  +Y+ +
Sbjct: 818 AVRLTGKAAVKPAGSYYLHV 837


>gi|210134553|ref|YP_002300992.1| hypothetical protein HPP12_0355 [Helicobacter pylori P12]
 gi|210132521|gb|ACJ07512.1| hypothetical protein HPP12_0355 [Helicobacter pylori P12]
          Length = 778

 Score =  138 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/389 (15%), Positives = 135/389 (34%), Gaps = 50/389 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +    AS  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEIALSYIESETSK---ASNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +                        ++S S +   +
Sbjct: 494 NLHIEPIKDAYTLFAPSPLKDYQEEEIKAAIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   + +    P  +   + +  G+L H ++ E  +   +KN   +   +  ++
Sbjct: 540 TCKRRFYYHYMKRFKESPKDE---NNSAVGSLLHELLKEAYE--KDKNPYALEERLIWLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAIESIGIHL 898
           +    ++N+ P   +    +  KI  +F   E++  +  I+ + +    +  I+  G+  
Sbjct: 595 E---TRKNITPKERLDTLIVLKKI-QAFYLKEKERFNTKIKILDLEKSFETIIQ--GVVF 648

Query: 899 TGFADRIDLLKSGFVDITDY------------KT--GDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID      + + DY            KT  G     E AQ   D Q+++ A AL
Sbjct: 649 KGRIDRIDKTADNEIILLDYKFKNDLKLDNMSKTQRGSLNPIEIAQISTDHQMAIYAFAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
           K   +           F+  L++   ++ 
Sbjct: 709 KNLGYKD-----PIKAFFYDLRKGELVEE 732


>gi|227486419|ref|ZP_03916735.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172]
 gi|227235600|gb|EEI85615.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172]
          Length = 1115

 Score =  138 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 109/970 (11%), Positives = 256/970 (26%), Gaps = 142/970 (14%)

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
              +      L         +  L L  +    I    ++  +I   +          ++ 
Sbjct: 81   EFLNKEGKVLLLTNILQDLKDDLKLFENSYQNIDFINSIVGLISNFKDNNFDEGFFASIF 140

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
            N        +  + +K+    + + L            ++ + A  +         I I 
Sbjct: 141  NSDISEISKIKFEEIKLILDTYQKELE--GKYFDKEDILSFVAANLDKTDLLDGYEIFID 198

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
                       L+S + N      +   +D                +             
Sbjct: 199  KFDFFEERKLDLISALYNKGLNLNISLNIDPKF------------ISNPLVRPEIFDGSA 246

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
             +        + +  ++       +  + R    +                   +    +
Sbjct: 247  RTFDLFRQDFESEVINLPSNPKTVDLDHLRINFETY------------------RPAPFE 288

Query: 354  KCFSDVALIEADNEREE----AISIAIALRMSLDENKKKSALITADRNLAR-RVKLELTR 408
            K   ++ + E+ + + E    A+ I   ++ + D   K  A+   D +     +    +R
Sbjct: 289  KNPENIKIYESISTKSEVTNMALLINKIIKTNPDIRYKDMAVYLTDPDQYENELIKTFSR 348

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS--- 465
            + I I +     ++         +LL           +  ++   L      +       
Sbjct: 349  YEIPIFLDKRRKMADNHIIKTFLALLRLKVNNFRQEDLFYILNSKLIGISDKDANALINF 408

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                 ++      +K      D     L        N      +     E+ +   L+  
Sbjct: 409  LTYRKIKGSMFENDKYFAMDEDFYEKNLV-------NDPKKDEKIAKKREEYDHVNLVRA 461

Query: 526  HILQCITPLV----TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             IL     L     T K         ++ SD  K        +  +          E+  
Sbjct: 462  KILHLTKGLDKKNMTVKDLATKIFKMIADSDIKKSINAFQAKLLENADLD-DYKENEQIW 520

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
                ++  +++             + I+  +     +         L +      R+ N 
Sbjct: 521  DEFVAILDQLVLLMGDRSLPLSRVVTIVEAVTRDIQIGLIPPSKDHLIVTDFARDRVSNK 580

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-------LKTAEKYIGQAAHDFEMANGT 694
               IL G+++  +P   AK+  +S     +L        L   ++   +    +++ + +
Sbjct: 581  KINILLGMDDAYFPSQKAKDYLISPDEMEELEKAKIDLKLYAKDRDRAELLSLYKIISRS 640

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLV----------LGGTDFFDNLKKRG--------- 735
              LI++ +L +     +    + R +           L      D +  R          
Sbjct: 641  DKLIFSYALSDKEGKDLNESLVIRDIRKIFPKLKKNILLDPRAEDAIFARESLKKYTLAV 700

Query: 736  ---------------QCYLDWTRKLDYTTKQPH------------------YKRPKPFPP 762
                           Q    +   L    ++                             
Sbjct: 701  LNKLANKEKITDKDKQIATAFMEYLRENQEKDENKLTYDKVKKGLFYTNDKLALADELRK 760

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            +  +   YS SEI+     PY  +      L      + D D  D G + H    +L + 
Sbjct: 761  VLYKKHAYSVSEIETYSACPYKHFIAY--GLRPDVEKEFDVDALDIGNIVHKSFEDLSRL 818

Query: 823  RINKNTPEIN-HLMKQIIDSHFEKENLP------------PHIDIIWRHLFHKISHSFLE 869
              + +  E++   + +++D  F +                 +I         + +   ++
Sbjct: 819  IKDMDLDEVDFSEIDKLLDEKFNEGIDENLDSTRKDSPKNKYILKNINQAAKRNTRQIVD 878

Query: 870  HEEKIQSSIEKIFVNIPAK-------MAIESIGIHLTGFADRIDLLKSGFVDITDYKTG- 921
              +  +   +  +             + ++     L G  DRID +    V + DYKTG 
Sbjct: 879  QLK--RGDFKLEYFEQAFDKGGFFDPVYVDEENY-LRGRIDRID-MAGNLVRVIDYKTGS 934

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
                        D QL +   A+           +    FYI LK + +    +   ++ 
Sbjct: 935  KAFNLAAILNGKDLQLIIYMIAVS----DDKKNLEPIGAFYISLKDEIENFGDSIADEEK 990

Query: 982  SADELSEKSL 991
             +  L +K  
Sbjct: 991  ISASLDKKFA 1000


>gi|317181701|dbj|BAJ59485.1| hypothetical protein HPF57_0411 [Helicobacter pylori F57]
          Length = 778

 Score =  138 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 134/397 (33%), Gaps = 50/397 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +     S  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +   T                    ++S S +   +
Sbjct: 494 DLHIEPIKDAYTLFESTPLKDYQEEEIKTAIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +     +  G+L H ++ E  +   +KN   +   + Q++
Sbjct: 540 TCKRRFYYHYIQRFKESPKDE---SNSAVGSLIHELLKEAYE--KDKNPYALEERLIQLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKIFVNIPAKMAIESIGIHL 898
           +    +EN+ P   +       KI  +F   E++   + I+ + +    +  I+  G+  
Sbjct: 595 E---TRENITPKERLDTLIALKKI-QAFYVKEKERFHAKIKILDLEKSFETTIQ--GVAF 648

Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID      + + DYK               G     E AQ   D Q+++ A AL
Sbjct: 649 KGRIDRIDKTADNEMILLDYKFKSDLKLDNMSEKQRGSLNPIEIAQISADYQMAIYAFAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
           K   +           F+  L++   ++      +  
Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEEEEPVLQAK 740


>gi|297157456|gb|ADI07168.1| putative ATP-dependent DNA helicase [Streptomyces bingchenggensis
            BCW-1]
          Length = 1132

 Score =  138 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 72/613 (11%), Positives = 146/613 (23%), Gaps = 70/613 (11%)

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             D     TL+  PL         L R   AL        +      D+            
Sbjct: 511  LDVETALTLLASPLGGM--DAADLRRLGRALREEERAAGRAVPRPSDV---------LLA 559

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                 P             A  L   + +    L    T + +       + W +     
Sbjct: 560  EALAEPERLVAHDPAYARGAQRLGLLLRKARELLAGGGTAEQALWELWDGTSWPQRLERA 619

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                         +L         ++   + +     +        +I  + I  +T+  
Sbjct: 620  AHRGGAAGRNADRDLDAVCALFETAARAEERVGGRGALNF----LDEIDAQDIAADTLSR 675

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
            ++     + ++    S+ L +  +++ G+ EG+WP    +   L         L      
Sbjct: 676  RLVSPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSP 735

Query: 681  IGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
                A                L+ T      +     SR+L  L V           +R 
Sbjct: 736  GALLAEERRLFYVAATRAAERLVVTAVKAAADDGDQPSRFLAELGV--EPVDVTQRPRRP 793

Query: 736  QCYLDWTRKLDYTTKQPHYKRPK-----------------------PFPPLEAQPRTYSF 772
                    +L  TT  P                             P          Y  
Sbjct: 794  LSVAALVAELRATTVDPAASEALRDAAARRLARLAALRDDDGQPLVPAAHPYRWWGLYEP 853

Query: 773  SEIKQLINDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNIITE 818
            +     + D     A     L                +            G + H ++ +
Sbjct: 854  THSAVPLRDRDRPVALSGSALDQLVNTCSLQWFLGREVKADTPSTAAQGFGNVVH-VLAD 912

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
             +          +       +      +                    FL      +   
Sbjct: 913  EVASGRTPADLAVLMERLDSVWDALSFDAPWKSRQEKEHAR--AALERFLRWHVMERGGR 970

Query: 879  EKIFVNIPAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936
              +       + +E+    + + G  DR++  + G   + D+KTG       A     PQ
Sbjct: 971  APVATEHEFDVTLEADAYQVRIRGSMDRVEADEEGRAYVVDFKTGKQAVTRDAVAH-HPQ 1029

Query: 937  LSLEAAALKAGSFSQI---DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL-- 991
            L++   A++ G+   +      +      ++L+Q        +   K  A E        
Sbjct: 1030 LAVYQLAVREGAVDGLFADGHPEPGGAELVQLRQGAARKEGGDAVPKVQAQEPPRGEWVG 1089

Query: 992  KNLIEIVTLLQNG 1004
            + L      + + 
Sbjct: 1090 ELLATAAGRVLDE 1102



 Score =  103 bits (257), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/660 (9%), Positives = 150/660 (22%), Gaps = 31/660 (4%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTA--DLLLSYNLNPPV 103
            + +   +++A  ELR       G      P   +          A  D+ +  +    +
Sbjct: 16  RILVLTFSRKAAVELRDRMAARLGG--ARGPQATTFHSFCYALVRAHQDMDIFADPVRLL 73

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           S  ++ + +  L+        +               +       A  +  ++       
Sbjct: 74  SGPEQDVVVRDLLAGQAELERE---GRAAVRWPDELRACLTTRGFADEVRAVLARSRELG 130

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                L      +    W  AA FL         + V   A       +   R++    +
Sbjct: 131 LDPRALGDFAARQGRPDWRAAAAFLAEYLDVLDAQGVLDYAELVHRAVLLAERSDTAADL 190

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                 + +     +  A  RL+  +A    G  ++   D       +            
Sbjct: 191 AARYDAVFVDEYQDTDVAQLRLLRALAG--GGRTLVAFGDPDQSIYAFRGADVGGILEFP 248

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +                    +   V+ L                       + +    
Sbjct: 249 YSFPRRDG--------------RPAPVQVLTTSRRSGATLLAATRLLTHRMPLTRLPADS 294

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLA 399
           +  ++  +  +    V          E  +IA  LR +  E     ++ + L+ A     
Sbjct: 295 VRAHRELSAVRGGGRVEAYTYPTAGSELDNIADILRRAHLEDGVPWREMAVLVRAGGRSL 354

Query: 400 RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
             V+  LT  G+ +++     PL      + L + L A                  A+  
Sbjct: 355 PGVRRALTSAGVPVEVDGDDIPLRHEPAVAPLLTALRAAATAALREPAGRGAPE-PAEPA 413

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
            P         A          ++       +     +     +         + +    
Sbjct: 414 EPAGLAEALGVASPAPGAAEAADAAGAARGPTPGDLGLDAAVADAAPAANPVPVGDSPAP 473

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
               +                                L V     +       +      
Sbjct: 474 GGAHVAGAADAAGPDAGAGAPPGGRPGAAGGAGGAAALDVETALTLLASPLGGMDAADLR 533

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
             G+ L     +     +  + + +   + +          P   + +    L   ++R 
Sbjct: 534 RLGRALRE--EERAAGRAVPRPSDVLLAEALAEPERLVAHDPAYARGAQRLGLLLRKARE 591

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L             +W   +          +     + A++ +      FE A      +
Sbjct: 592 LLAGGGTAEQALWELWDGTSWPQRLERAAHRGGAAGRNADRDLDAVCALFETAARAEERV 651


>gi|110635907|ref|YP_676115.1| DNA helicase/exodeoxyribonuclease V, subunit A [Mesorhizobium sp.
            BNC1]
 gi|110286891|gb|ABG64950.1| DNA helicase/exodeoxyribonuclease V, subunit A [Chelativorans sp.
            BNC1]
          Length = 1177

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 96/875 (10%), Positives = 219/875 (25%), Gaps = 105/875 (12%)

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
             +         LP      +  A+ L    D +           AL              
Sbjct: 309  ERTFKAALKARLPGIYDRYLAAAEFLRQACDRLALFRMLTATTAALGIAD---------- 358

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAGSTGS 238
                    +                +  +R  A   +              I+I  +  +
Sbjct: 359  ---ALIARYERLKRARGFLDFNDLIMRTVRLLARQDVGPWVQYKLDRGIDHILIDEAQDT 415

Query: 239  IPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY- 288
             P   R++ ++A                +    D       +     ++   +       
Sbjct: 416  SPEQWRIVRSLAEEFFAGKGSRDGVERTIFAVGDEKQSIYSFQGAEPEAFAESGFRFQAQ 475

Query: 289  --STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS----FLPPDTSDMRNT 342
              +   ++   +L        + ++ +  V +    R  +              S     
Sbjct: 476  VPAAGGRFERVRLTRSFRSTEDVLRAVDLVFSREEARKGLTRDPEPIEHKAIRDSAPGYV 535

Query: 343  DILENKIPNIQKCFSDVAL---IEADNEREEAISIAIALRMSLD------------ENKK 387
            +I     P + +   D        +    + A  IA  +   L                 
Sbjct: 536  EIWSPLSPEVVEEPDDWTKAVDHASAPAAKLAEVIAGKVESWLKNGEMIEGQGRRLRPGD 595

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
               L+         +   L    I++  +  + L+  +    LT+L   + + ND +++A
Sbjct: 596  IMVLVRKRDRFVHALSRSLKNRRISVAGADRLRLTAHIAVKDLTALGRFLLQPNDDLSLA 655

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             ++K PL        +      A  +   +  +           +LD +   + +     
Sbjct: 656  AVLKSPLFDLDEDALFRLAWPRAESVSLFQALREKASADGKLQDILDTLRNWQRDAAFRP 715

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                 +      A          +  L     +      +  ++      +     +   
Sbjct: 716  VFEFYASVLAGTAGREGARSRF-VARLGHEANDVLDEFLSFCLTAERTGLIGLEALLDTL 774

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
            E               +     +  +    +  +A + ++     +      P       
Sbjct: 775  EG----------AAPEIKREMDQSRDEIRIMTVHAAKGLEAPVVFLVDPGSAP------- 817

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
              +  +    L+ F    L      V      +   L+  +      K  EK   +    
Sbjct: 818  --VSNSHMPCLMPFRMKELP-----VKGFLWRQGKDLANTVARGFEAKVREKAEEEYRRL 870

Query: 688  FEMANGTRHLIYTRSLRENNIPTIASRWL---------------QRLLVLGGTDFFDNLK 732
              +                      S W                 +   +       ++ 
Sbjct: 871  LYVGMTRAEDRLIVCGYHGVRGPAPSTWHNLVRQAFADQPGTTELQDPEICAPVLRFSVT 930

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
               +   + +R     T     +  +P PP  A PR  S S    LI   Y   A  + +
Sbjct: 931  PPVEMPREESRASKVETFDIPAELTRPLPPAPAIPRPLSPSGAAVLIEGGYEAAA--LKR 988

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
               +          +RGT  H ++  L +   +K        + +   S   +E      
Sbjct: 989  SPVLDGAADPGFALERGTAVHRLLQALPELAPDKREIAARRYLARAGASWPPREAESVCR 1048

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
             ++      + +  F        +   +  V++  ++ +      ++G  DR+ +   G 
Sbjct: 1049 SVLAVLRDEQFAPIF--------APGSRAEVSVMGEILLGGTPQAVSGKVDRLAVTA-GE 1099

Query: 913  VDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALK 945
            V + DYKT     +           QL+L A  LK
Sbjct: 1100 VLLVDYKTNRPAPEHFAEVPAAYIAQLALYAELLK 1134


>gi|237752642|ref|ZP_04583122.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376131|gb|EEO26222.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 662

 Score =  137 bits (345), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 103/329 (31%), Gaps = 32/329 (9%)

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + ++G LE+R ++ + +I+   N    P  + K+ FL+  ++  + L T +   
Sbjct: 291 DVGGGRIRVMGILETRGVDLEYVIIPEFNASNVPSLSDKDIFLNTKIRESVGLPTRKNRE 350

Query: 682 GQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
               H +     G +           +     SR+L    + G            + +L 
Sbjct: 351 NLQKHYYAELLGGAKEARILCLNNVVDK---PSRFLLEDSIFGTQTPQKTSPAYSEYFLS 407

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                    +                  ++S + ++  +      Y R +L L      +
Sbjct: 408 GKALNYKEQQIIA----------PLNKDSFSATSLECFLTCKRKFYYRYVLGLKAQEQER 457

Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
                 + G+  H  + E+  +    +   +     + ++            +     L 
Sbjct: 458 -----VNIGSKIHEALREVYAQAQEFDAEILYKEFCRRLNVSV------SARERFESELA 506

Query: 861 HKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
            K      + E++        +         +E  G  L G  DRID  K   + + DYK
Sbjct: 507 KKYFKRVFDLEKERLKEGWNPVLFESDFSFMLE--GFELKGRIDRIDK-KGNELLVLDYK 563

Query: 920 ---TGDNPKKETAQKLIDPQLSLEAAALK 945
              +      ++  K  D QL +   A+K
Sbjct: 564 YKRSLKRDSVKSYDKSSDFQLPMYYLAVK 592


>gi|268607992|ref|ZP_06141723.1| ATP-dependent nuclease subunit B [Ruminococcus flavefaciens FD-1]
          Length = 1112

 Score =  137 bits (345), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 96/899 (10%), Positives = 231/899 (25%), Gaps = 140/899 (15%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF----LKIASKYWTERLVEL 202
             A+++  +I  ++      E L      +    +     F    + +    +   + E 
Sbjct: 114 GFAEDVLKLIGEMKRAGLTPEALM-----ERSQMFGDRLRFKTSDIAMIYMEYQRLMNEY 168

Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                +   I +    AE         + +            ++  + +      +    
Sbjct: 169 GFKDSIE-NIKVAAEIAELQGYFRGRSVYLDEFESFTADQIAMLRVMISSAENVCIALRT 227

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D  +    +      +       +  +    +    +L         +       +    
Sbjct: 228 D-DVTAGRFTLFETVNKTYEDIKSICTE---FRKETVLTECSESYRFISPDIAYLSSHVL 283

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
           R+   S                     P       ++ + EA +   E   ++ +++  +
Sbjct: 284 RNKKYS---------------------PEEAPKPDNIKIFEARDMYSEVEYVSASIKRLI 322

Query: 383 ----DENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
               D   +  A+I+ D      +      R+ I   +S   P++ T      TSL++ +
Sbjct: 323 HSRKDLRYRNIAVISNDITAYAGIIKAAFKRYDIPYFLSVEKPVTHTAVMVYFTSLIDLL 382

Query: 438 FKL-NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    I  ++K  L      +              +       +       +    
Sbjct: 383 CSRKFRSELIFRMLKSGLTDVSLTDISALENY--CYKWTVDSEIWESEFTAPDDALDSLE 440

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
           A +K          +   +      +                    +      +S   + 
Sbjct: 441 AIRKTVIEPVFALRKKLSKKCTAKKIC-------------------TLIYEHLVSGGIEK 481

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            V  + +  ++  R       +     L  +   I ET    + +  E   ++  +I   
Sbjct: 482 NVGRMMSGLINSDRAYEAAEIKRLWGCLIDILDSICETLDENEMSFSEAAKLMKSMIGRI 541

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673
                 +    +       +RL     + + G N+G +P     +   S   +  L    
Sbjct: 542 NYSVPPQTLDAVMTASARTARLNAPKAVFIMGANDGDFPNQVTVHGLFSEPDRQKLAEKD 601

Query: 674 ---LKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDF 727
                     I         +       L  +  L + +  T   ++ +  ++ + GTD 
Sbjct: 602 LLVSTPLADLIAAERLVVYKSVSAPSEKLFISYPLSDLSGQTKYPAQIIDSIIKMFGTDR 661

Query: 728 FDNLKKRGQCYLDWTRKLD-----------------YTTKQPHYKRPKPFPP-------- 762
              L +       +   L                     +Q    RP             
Sbjct: 662 IR-LTEDDIPVHYYAATLHSAFYHYMQNRESNTPSAAAVEQLLMSRPDYKRRLIYVLSRS 720

Query: 763 ----------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                               P   S + +++     +  +  + L L      +   D  
Sbjct: 721 GHEQEYLIESEIMENLKSFSPLRLSSTGLEEYDLCHFKFFCDKCLGLHPREKIE--LDAR 778

Query: 807 DRGTLFHNIITELIKKRINKNT-----PEINHLMKQIIDSH----FEKENLPPHIDIIWR 857
             G L H     L+  R  +        ++   + +  + +       +        +  
Sbjct: 779 IAGELTHECFFGLLSSRSKQEFISMSYEDMREEIGRKAEEYRNNKLAGDFGKDAKFGLIF 838

Query: 858 HLFH-KISHSFLEHEEKI-QSSIEKIFVNIPAK----MAIESIG---IHLTGFADRIDLL 908
                ++S  F+  ++ +  S        +  +    + +       +   G  DR D+ 
Sbjct: 839 SKLTDRLSEVFIHTQQSLMASDFVPHKFELDLRESHSVVLPFGNGKQLSFGGIVDRADIC 898

Query: 909 K-SGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAA-LKAGSFSQIDCRKVANLFY 962
           K +G   V I DYK+       ET    I+ Q+ L   A    G   +    + A + Y
Sbjct: 899 KINGRDYVRIVDYKSSRKNITAETLGCGINMQMLLYLFASADKGGIYE--GCEPAGVLY 955


>gi|33592639|ref|NP_880283.1| hypothetical protein BP1547 [Bordetella pertussis Tohama I]
 gi|33572285|emb|CAE41837.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332382056|gb|AEE66903.1| hypothetical protein BPTD_1530 [Bordetella pertussis CS]
          Length = 886

 Score =  137 bits (345), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 92/854 (10%), Positives = 223/854 (26%), Gaps = 53/854 (6%)

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            +   E   S                          +     S  AT  +           
Sbjct: 45   QLSSERQVSELPRIMPLSAWLADCVAELAFDERYEVPAYRLSSFATQLVWREAIRLEEAD 104

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
              L   D            +    +           +    +       +   +    + 
Sbjct: 105  RALLDAD-----QAARLALDADLLVDEWQAHVPAGAETDEYRGFSRWRARYRAMLGELDA 159

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
             +   G   V+         +           I           L    +   + ++   
Sbjct: 160  EDANQGYERVLEALRQGALRAPRHVALAGFVDISPRFARL----LRALADGGADVVAWRD 215

Query: 377  ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
            A+R      + ++A   A+   A R   +  R       +   P            L  A
Sbjct: 216  AVREPAWPQRFEAADRGAEWRAAARWAADRLRADPRGRYAIVSPQLEAEAPFARRVLGQA 275

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            +   +  +     V   L ++      L+      E+ A    + +     L +      
Sbjct: 276  LAGQDAPLPFNVAVGRALDEWPAVRAALAWLALLAEVAACGAGEPALFGAALLAGHCAGD 335

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLL---VDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +         + R               ++   +             +   + +   W
Sbjct: 336  LQEGPRHAALDARWRRQALAHVGPADWQRGLEECPRLAEGWSQAMAIWQAGQRSDTCDAW 395

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                   L  +     R L ++ ++  G     L        +  + +    + ++    
Sbjct: 396  APRFKAALTALGFPGERALDSVAYQVMGALGDLLAEFTALAPAAGRLDGRAAVRLLASAA 455

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               + +P+ + S+ L +LG LE+    +D + + GL + V P +   NP L   +   + 
Sbjct: 456  RAGSFQPQRDPSARLDVLGLLEAEGGAWDGIWVLGLTDDVLPASPKPNPLLPLAVLRQVG 515

Query: 674  LK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
                T E+    A   F         +I + +  +       S  + R            
Sbjct: 516  APRATPEREREWAEGMFMALRRCAPEMIASHAAMDGERELRPSPLIVR------------ 563

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
                   +   T       +Q      +  P    +        +     +P   + R  
Sbjct: 564  --AAPADWQPGTDAQVAALEQEILDDSQGPPLQAERQSRGGLDVLDTQARNPLWAFVRHR 621

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---PEINHLMKQIIDSHFEKEN 847
            L    +  +      + RG   H  +  + +   ++           +  +++    +  
Sbjct: 622  LGGRAMAPYADAATVSVRGQFLHRALELVWRMLPDQEALHAAMAEGRLAALVEQAIGEAA 681

Query: 848  ------LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
                   P  +  +       +  ++ + E + Q         I  + + +   + L   
Sbjct: 682  RTELAGYPAALRELECARAAAVLANWFDSEAQRQPF---EVAQIEQEHSWQRGALALKVR 738

Query: 902  ADRIDLLKSGFVDITDYKTGDNP----KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
             DR+D L  G   I DYKTG  P          + ++ QL   A+ L  G+ +++    +
Sbjct: 739  LDRMDRLADGRALIVDYKTGAAPGRPESDWARARPVNLQLPFYASVLADGADTEVAGLML 798

Query: 958  ANLFYIRLKQKFKIDCITNDKKKYSAD-------ELSEKSLKNLIEIVTLLQNG-EQPFI 1009
            A +   ++  +         +     +       +   + L+     V +L +     + 
Sbjct: 799  AQIHARQVSAQGLAADDLGIEGVTPVEQSKAFEGQPWPRILQRWRAAVEMLADEYANGYA 858

Query: 1010 SHLRLSEKSNIQSE 1023
            +++ L +      +
Sbjct: 859  ANVALRQDDLKFCD 872


>gi|302558545|ref|ZP_07310887.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302476163|gb|EFL39256.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 496

 Score =  137 bits (345), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 60/461 (13%), Positives = 124/461 (26%), Gaps = 65/461 (14%)

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                +   E  +  +       +I    I  +T+  +  +   + ++    S+ L +  
Sbjct: 3   ALFATAARAEERTGGRGALNFLEEIEAEDIAADTLTRRAARHDAVRLMTAHRSKGLEWRL 62

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA----HDFEMANGTRH-LI 698
           +++ G+ EG+WP    +   L         L          A      +  A   R  L+
Sbjct: 63  VVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEERRLFYVAATRARERLV 122

Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY---- 754
            T      +     SR+L  L V           +R         +L  TT  P      
Sbjct: 123 VTAVQAPADDGDQPSRFLTELGV--EPKDVTGRPRRPLSVAALVAELRATTVDPRVSDTL 180

Query: 755 -------------------------------------KRPKPFPPLEAQPRTYSFSEIKQ 777
                                                 R +       QP   S S + Q
Sbjct: 181 REAAAQRLARLAALADEDGRPLVPSAHPYRWWGMFEPTRSRVPLRDRDQPVVLSGSALDQ 240

Query: 778 LIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
           L N      +  R      +            G + H ++ + +         ++     
Sbjct: 241 LANTCALQWFLGR-----EVKADAPATAAQGFGNVVH-VLADEVASGHTPADLDVLMERL 294

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG- 895
             + +    +                    FL+     ++    +       + + +   
Sbjct: 295 DSVWNALAFDAPWKSAQEKENARV--ALERFLKWHVMDRTGRTPVASEHDFDVTLGAGDY 352

Query: 896 -IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + + G  DR++    G   + D+KTG   P     +    PQL++   A++ G+  +  
Sbjct: 353 EVRIRGQMDRVETDGDGRAYVVDFKTGKQAPSSAEVEHH--PQLAVYQLAVREGAVDEAF 410

Query: 954 CR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
                +      ++L+Q            K  A +  E   
Sbjct: 411 GGTRPEPGGAELVQLRQGAAKRDGGETLPKVQAQKPPEGEW 451


>gi|327398225|ref|YP_004339094.1| hypothetical protein Hipma_0052 [Hippea maritima DSM 10411]
 gi|327180854|gb|AEA33035.1| hypothetical protein Hipma_0052 [Hippea maritima DSM 10411]
          Length = 933

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/510 (14%), Positives = 155/510 (30%), Gaps = 68/510 (13%)

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
             +DE +        +  + L +     I+       +      +   ++    V  +   
Sbjct: 440  GIDEEKLQEFELESQLFQLLQTHIIDAIDNLPDRSIDLKFAYQLTKEILKDIQVPFEGYP 499

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
               + I+G LE+R L+FD +I+  +NEGV P     +P L   ++  L L + ++     
Sbjct: 500  LKGIQIMGMLEARSLSFDEVIVADVNEGVLPSIDKIDPLLPEEIKVALGLTSFKQKEALV 559

Query: 685  AHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
             ++F       ++  I  +         I SR+ ++L++L               Y    
Sbjct: 560  KYNFFRLIYSSSKAHIMYKVGSTGMEKFIKSRFAEQLILLEELKGKKLNF-----YTPKI 614

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
                    + + ++ +          +++ +EI   +N PYA Y   I ++      +  
Sbjct: 615  NLTVAGDSKNYIEKDEEAINYFNSKISFAPTEIDAYLNCPYAHYLGYIKEIKPRISLEDK 674

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTP---------EINHLMKQIIDSHFEKENLP---- 849
             +    G + H ++ E   +   K                 +  I  +H ++        
Sbjct: 675  FEANVLGNIIHKLLEEGFAEFKGKELGKDDLEKIRKNTLRRLDNIFKNHDKETKDFLDKL 734

Query: 850  PHIDIIWRHLFHKI-SHSFLE--HEEKIQSSIEKIFVNIP---AKMAI-ESIGIHLTGFA 902
               + +   +  K    ++       K     E +          + +  ++ + L G  
Sbjct: 735  SEFEKLGLPIILKFRLSNYFAVITNSKDFKPFEVVETEYDRGTFDIELSPTVNVTLWGKI 794

Query: 903  DRIDLLKSGFVDITDYKTG----DNPKKE--TAQKLI------------------DPQLS 938
            DRID +    + I DYKTG        K+       +                    QL+
Sbjct: 795  DRIDKVGD-VLRIVDYKTGMHSLKPKVKKIIQVSNHLKYDLFNDEELKKVRDTVVSFQLA 853

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
            +    +        D        YI      +    + D          E   K L   +
Sbjct: 854  IYMLIITN---EWKDKEITTEFHYIGKSNIIEKGPTSRD---------IEIYKKLLQYTL 901

Query: 999  TLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
              ++N    +     +         Y++  
Sbjct: 902  NHMRNSGHIY----AIPSDRCSFCPYNYFC 927



 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 49/164 (29%), Gaps = 21/164 (12%)

Query: 53  TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
            KR I+ +  +       ++ +     ++ + V+         +  +    S + R L  
Sbjct: 38  NKRPIRFIEKQIS----PEAALGVDFFTIDEFVQWIVAKYSHPAPTIQ---SKLSRELYF 90

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
             LI     +   +                A  +  AK L+ + D I+ +    + L   
Sbjct: 91  LDLIKSTIGEEKPLFGG-----------DDAQLLGWAKRLSSLFDEIDRQLLD-KKLANF 138

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
           +  +      L  + LK     + E L     +         ++
Sbjct: 139 QYIEAIDEAQLILERLKSLYAKYREDLKS--FTYSGDSFRRAVK 180


>gi|332673205|gb|AEE70022.1| conserved hypothetical protein [Helicobacter pylori 83]
          Length = 778

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 135/397 (34%), Gaps = 50/397 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +     S  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKDSKEMALSYIESETSKV---SNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +    T                   ++S S +   +
Sbjct: 494 DLHIEPIKDAYTLFESTPLKDYQEEEIQATIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +   + +  G+L H ++ E  +   +KN   +   + Q++
Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSAIGSLLHELLKEAYE--KDKNPYALEERLIQLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKIFVNIPAKMAIESIGIHL 898
           +    + N+ P   +       KI  +F   E++   + I+ + +    +  I+  G+  
Sbjct: 595 E---TRGNITPKERLDTLIALKKI-QAFYVKEKERFHAKIKILDLEKSFETTIQ--GVAF 648

Query: 899 TGFADRIDLLKSGFVDITDY------------KT--GDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID      + + DY            KT  G     E AQ   D Q+++ A AL
Sbjct: 649 KGRIDRIDKTADNEMILLDYKFKSDLKLDNMSKTQRGGLSPIEIAQISADYQMAIYAFAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
           K   +           F+  L++   ++      +  
Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEEEEPVLQAK 740


>gi|319763162|ref|YP_004127099.1| exonuclease-like protein [Alicycliphilus denitrificans BC]
 gi|317117723|gb|ADV00212.1| exonuclease-like protein [Alicycliphilus denitrificans BC]
          Length = 855

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 99/680 (14%), Positives = 184/680 (27%), Gaps = 78/680 (11%)

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                   L   +         + L  A +  +EA   A      +   +   AL   DR
Sbjct: 208 CAAWGDRALALPLWQAPTGQGRIRLRRALDAEDEAQRAAACAIAHVQAGRVPVALAGTDR 267

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L RR+   L   G+      G  LSTT  ++ + + L A        A+   +K     
Sbjct: 268 ALVRRITALLQGAGLAARDENGWTLSTTRAAAQVMAALRACAWDAGSDAVLDWLK----- 322

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                                                  +  +     +  W  R +   
Sbjct: 323 ------------------------------------AVPVIEEPALRALEQWLRRNAVRR 346

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
              A             +   +  +        +++W +     LQ     +  +  +  
Sbjct: 347 WSGAPGRAQGRPAIAATIAQVEALRAPMRAARPLAEWLRGLRQLLQASGQWDALQQDDAG 406

Query: 577 FEEEGKTLSSLFSK---IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL--FIL 631
                +   +   +       G+  + +  ++     ++++    KP  E+ +     +L
Sbjct: 407 ERVLLELHLAEGLEDSLADAEGAGRRLSPGDFGHWADQVLEATRFKPDWEQDAAADLVVL 466

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
              +     F  L+L G +E             ++  +  L L T E         +  A
Sbjct: 467 PLPQLLARPFAALVLAGCDEKRLQAAPEPPGPWTQAQRQALGLPTREALEAAQRAAWADA 526

Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             T  +       E   P +AS  +  L          + +            L      
Sbjct: 527 LQTPWVDVLWRASEGGEPLLASPLVLALPPALHAQAPQDTR------------LPRAVAP 574

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
               RP P           S S    L + PY  YA R L L      + + D+ D GT 
Sbjct: 575 GATPRPWPVGAR-LPVAQLSASAYADLRHCPYRFYALRQLGLQEQDELEAELDKRDFGTW 633

Query: 812 FHNIITELIKKRINKNTPEINHLMKQI------IDSHFEKENLPPHIDIIWRHLFHKISH 865
            H ++    +   +  T +      ++                                 
Sbjct: 634 LHAVLQRFHEGLRDAPTRDAAERSARLDAAASQAREQLGLAGSDFLPYASGWPQLRDGYL 693

Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF----VDITDYKT- 920
            +L+  E   +   +  V     +A++   + L G  DRID  K         + DYKT 
Sbjct: 694 RWLDEHEAAGARFARAEVEAQRHLALKGGSLELVGKLDRIDEAKDAEGRAGTLVIDYKTE 753

Query: 921 GDNPKKETAQKL-IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
           G    +   Q    D QL+  AA +  G       R      Y+ + ++ +         
Sbjct: 754 GSQTTRARVQAGTEDTQLAFYAALMPEG-------RGPLRAAYVNVGERGETRTFEAPDV 806

Query: 980 KYSADELSEKSLKNLIEIVT 999
           +   D L      +   I  
Sbjct: 807 EQLRDALLAGIRDDFDRIAQ 826


>gi|57242576|ref|ZP_00370514.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57016861|gb|EAL53644.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 794

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 116/348 (33%), Gaps = 35/348 (10%)

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
           + K        +  +G LESR L+FD +I+   NE + PK +    FL+  +++   L +
Sbjct: 414 SFKQSYIGGGAVTAMGILESRGLSFDGVIVVDFNEDLIPKRSVNELFLNNEVRTKAGLIS 473

Query: 677 AEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            EK        +E      + +       E       SR L+ L          + K   
Sbjct: 474 YEKRENLQRFYYEQLFKNAKKISICYVENEEKS---RSRLLEDLEFRLDLTKEFSQKA-- 528

Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
             YL+  +      +        P           S+S +   +      + + I  L  
Sbjct: 529 --YLNALKLNYKAKQINLEPPRAPKLKHNLFATPLSYSRLTLFLKSKRTYFYKYIKHLKE 586

Query: 796 IPHFKKDPDRTD-------RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
               K D    +        G   H I+    K     +        +++  S  EKE  
Sbjct: 587 PRELKMDIKEQNDRKRLKNLGIFTHRILELYYKYYNFFD--------EKLFTSLLEKEGQ 638

Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNI--PAKMAIESIGIHLTGFADRI 905
              +D +   L       F + E++       I  + +     + +ES  I LTG  DRI
Sbjct: 639 KEGLDALDLELLKMKFKEFAKKEQERFKQGYHIKHLELNMDKSIILESQRIELTGKIDRI 698

Query: 906 DLLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
           D  +  G + I DYK+G  P+K         QL+         + +  
Sbjct: 699 DSNERFGEL-ILDYKSGKIPEK-------SYQLAFYKLLYDENADATF 738


>gi|163857868|ref|YP_001632166.1| hypothetical protein Bpet3555 [Bordetella petrii DSM 12804]
 gi|163261596|emb|CAP43898.1| conserved hypothetical protein [Bordetella petrii]
          Length = 990

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 103/937 (10%), Positives = 226/937 (24%), Gaps = 82/937 (8%)

Query: 118  IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY 177
                 L      +  +    + +     +  A+ L   ++         +    L+ E+ 
Sbjct: 89   RLVRLLKGEGMPVAVDPNALITLEQVGRLPAAQTLVLTVNNRLARRLTLDLAAQLRRERQ 148

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
                          ++   E   E  A  P     A           G +    +   T 
Sbjct: 149  VSELPRVLPLAAWLAEAGGELAFEPGAELPAHRLDAFATQMVWADAIGAEEAGRVLLDTA 208

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
               A A    T+ +      V  G D                 + + +   +      + 
Sbjct: 209  QAAALAMDADTLMDEWR-LRVPDGADTDEYRGFSRWRRRYRERLAAIDAEDANQGYARVL 267

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
            + L    +       L   ++     + ++        T       + E   P       
Sbjct: 268  RALQRGGVAAPRHLVLAGFTDISPRFAALLDAFQQGGATLAWLGDTLGEAAAPLRHGADD 327

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
              A   A                        + L        R V   L   G   +++ 
Sbjct: 328  RGAEWRAAAAWAAQRLAEQP---DGRFAIVSAQLQAESPFARRVVGQALAAGGHAFNVAV 384

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G PL+         + L+A+  +    A    V       G              + A  
Sbjct: 385  GRPLTEWPAVRAALAWLHALADMAQAGAADAPVLGAALLAGHCAGDRRDLARLAAIDARW 444

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
              +    I   +           +       +      D+      +  I   +  L   
Sbjct: 445  RRQARARIDAARWQRDLAEGAALSAAWPAALERWQQAGDRLTTDRWMPVIRAALVALGFP 504

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                  + G   +  + +L                                         
Sbjct: 505  GERPLDSVGYQVMGAFGELLGRYAALAPAAGLL--------------------------- 537

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
               +    + ++       + +P+ +  + L +LG LE+   ++D + + GL + V P  
Sbjct: 538  ---DGRAAVRLLASAAAASSFQPQRDPLARLDVLGLLEAEGGHWDGIWILGLTDDVLPAT 594

Query: 658  TAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASR 714
               NP L   +         T E+    A   +         ++ + +  +       S 
Sbjct: 595  PQPNPLLPLTVLRQAGAPRATPERERQWAEALYAALCRCAPEVVVSHAHLDGERELRPSP 654

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
             +  +  +          +         +++    + P    P P  P            
Sbjct: 655  LIADVPPMAWQAPAAAAAE------VLPQQVLDDERGPPLAAPAPDSPRAGATGGLDV-- 706

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--------- 825
            +     +P   + R  L    +  +    ++  RG   H  +  + +   +         
Sbjct: 707  LDTQARNPLWAFVRHRLGARALADYADAANQNVRGQFLHRALELVWRMLPDQEHLHDAMA 766

Query: 826  --KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
              +    +   +++  D        P  +  +       +  ++L+ E   +   +   V
Sbjct: 767  QGRLPGLVEQAVQEAADEELRAY--PRALRELECERARAVLAAWLDLE-ARRLPFQVAQV 823

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP----KKETAQKLIDPQLSL 939
                        + LT   DR+D L  G   I DYKTG  P          + ++ QL  
Sbjct: 824  EE--THQWSRGPLALTVRLDRLDRLADGRAVILDYKTGMAPGNPESDWARARPVNLQLPF 881

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
             AA L            VA L   ++  +        D +       +  + K    +  
Sbjct: 882  YAAVLS----GDTPDADVAALVLAQIHARQVAAAGLTDTELGLEGVAAADAAKGFEGLAW 937

Query: 1000 L-------------LQNGEQPFISHLRLSEKSNIQSE 1023
                                 + ++L          +
Sbjct: 938  RDILLRWRTAVENLADEYAAGYAANLAYRRDDLKYCD 974


>gi|308232374|ref|ZP_07415860.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001]
 gi|308379444|ref|ZP_07486303.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010]
 gi|308380606|ref|ZP_07490521.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011]
 gi|308214071|gb|EFO73470.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001]
 gi|308356886|gb|EFP45737.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010]
 gi|308360886|gb|EFP49737.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011]
          Length = 1144

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 115/1097 (10%), Positives = 246/1097 (22%), Gaps = 142/1097 (12%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58
            ++  V    P          A    T+     +   N       V     T++A     +
Sbjct: 70   EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 129

Query: 59   ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
             +RS    + G        +   P++ +        F   LL  Y L  P+    RLL  
Sbjct: 130  RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 184

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
              L  +  + +      L  +   +   S    +W    L + +           +L  L
Sbjct: 185  TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 242

Query: 173  KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +      +                      L        ER+             +  R
Sbjct: 243  VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 302

Query: 217  AEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269
              A         +     +++     +  A   ++S++      +G  +    D      
Sbjct: 303  LAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 362

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             W   +  +    +++   S      + +LL       + ++    +S E   RS+ +  
Sbjct: 363  GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSVAVRA 422

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLD 383
                                P        V      + + E   IA  LR       +  
Sbjct: 423  LR------------------PRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADG 464

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                 +A++      A  +   L   GI  ++     L +    + + ++L  +      
Sbjct: 465  VKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAG 524

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVA------LRGNKNSYDIMDLKSLVLDRIA 497
             A   ++  P  + G  +      +                   +         + D I+
Sbjct: 525  AAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCLADAIS 584

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
               +                     L   +   +  LV            +  S      
Sbjct: 585  DPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGG 644

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGK------------------------TLSSLFSKIIE 593
                +++                                             ++    ++
Sbjct: 645  WAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQ 704

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
              +   A  +EW  +    +        + +SS L     L   L              +
Sbjct: 705  VLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVL 764

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPT 710
                 A    LS  +     L    +   +    +         +             P 
Sbjct: 765  DTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPR 824

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
              S +L  L  +                       D             +P      R  
Sbjct: 825  GPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRG 884

Query: 771  SF------------------SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                                +        P        +                RG   
Sbjct: 885  DVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPN 944

Query: 813  HNIITELIKKRINKNT------------PEINHLMKQII---------DSHFEKENLPPH 851
            H  ++ L++   +               P+ +  +                       P 
Sbjct: 945  HLSVSSLVELVGDPVGARQRLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLPG 1004

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
                      +++           ++     V +P +M I      + G  D + +   G
Sbjct: 1005 AADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVFVDPDG 1062

Query: 912  FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
               + D+KTG  P    A +    QL++   A    +        V   FY  ++    +
Sbjct: 1063 GATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VRSGITV 1119

Query: 972  DCITNDKKKYSADELSE 988
                       A  L++
Sbjct: 1120 VPDELPAPGELAMLLTD 1136


>gi|332799906|ref|YP_004461405.1| UvrD/REP helicase [Tepidanaerobacter sp. Re1]
 gi|332697641|gb|AEE92098.1| UvrD/REP helicase [Tepidanaerobacter sp. Re1]
          Length = 970

 Score =  136 bits (343), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 122/1009 (12%), Positives = 273/1009 (27%), Gaps = 150/1009 (14%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKS-----------TILPIIKSLGDVVEEKFTA 91
             +  +     TK+A  E+R    +   K+              +  I ++          
Sbjct: 46   DIDEIVAITYTKKAALEIRERLRKEMIKRKDEGDFSRCLEKLGVAYIGTIHSFCMRLLME 105

Query: 92   DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
            + + +      + +  +++E  R     +  + + I D      +    S      L+  
Sbjct: 106  NPVEAG-----IDSDAKVIEEYRSKAWMKESIRETIIDNLENKSVFQLTSELGFSKLSYE 160

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
            + ++++ ++ +  +   ++ +   +        A  ++   K +  +  E          
Sbjct: 161  IYELMNKMQNQGLRPSVINTMAETED---EKAIALLIEKTYKLYNFKKEEQFFLDYEDIL 217

Query: 212  IALMRAEAEHLMKGTK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
               +    E+    ++       I+I            ++  +  + N   +    D   
Sbjct: 218  QKTLDLLKENKAILSEYQKKFRFILIDEYQDLNFVQDEILRLLGKNTN---IFVVGDKKQ 274

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +     +       +       Q     L D        ++ +      +      
Sbjct: 275  SIYGFRGARVELFEKLRKDLER----QGQALTLKDNFRSDDRIIEHVNQSFENLIEGYEP 330

Query: 327  ISKSFLPPDTSDMRNT--DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS-LD 383
            I  +      +++     +         QK    +A    +   +E++ +          
Sbjct: 331  IKANRRHGGQNNICFLTMESQGTMSERRQKEGEMIAKKILEMISDESVKVFDRETQKYRR 390

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNAIFKLND 442
             + +  A++   +   +          I   +   G  +  +   +IL +L    F+  D
Sbjct: 391  PSFRDFAVLLRRKTHIKHYVNAFKAHEIPFYVADTGSIMEDSSVKNILCALKTVAFR--D 448

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             + +   + H L K    E          E V +R       I  L+         +   
Sbjct: 449  NINLYGTLSH-LFKISDEELA--------EYVLMR----QELISGLEEDASYDDIPESLA 495

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                        +D+     L   I                       +D T L     Q
Sbjct: 496  EAFKLILMWCKIKDRATLRELAQRI-----------------------ADDTMLLAAAAQ 532

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
            N  L+       L    +         + +E  S       E ID+              
Sbjct: 533  NDLLEVENVFKFLDLCRDYDEQGYTLREFLEELSDFGWEQQEAIDV-------------S 579

Query: 623  EKSSTLFILGTLESRLLNFDTLILGG--------LNEGVWPKNTAKNPFLSRVMQSDLNL 674
            E+   +  +    S+ L F  +IL            E ++           R     L  
Sbjct: 580  EEEDVVKFVTIHSSKGLEFPIVILADSGQEISGIFTEILFEPKIGLALKKDRDKWEMLKK 639

Query: 675  KTAEKYIGQA-AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
               +K I +A    +      R  +      +++      +WL         +   +   
Sbjct: 640  YLNQKEIEEAKRLLYVALTRARDYLLISGEMKSDKKDSFLKWLN-------PESITDSVD 692

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFP--------PLEAQPRTYSFSEIKQLINDPYAV 785
             G          D      + +  KP             + PR++S + I +    P   
Sbjct: 693  DGISIQTIWELSDVAVNTVNLQENKPKLGKKQIYLNKHISVPRSFSVTSIGEFARCPRRY 752

Query: 786  YARRILKLDFIPHFKK-----DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
            Y    + +     +K           +RGT+ H +I ++ K+ I  N  E    +     
Sbjct: 753  YLSNQMGIPERLFYKDCGDLSRLSARERGTIVHELIEKIHKENIKVNNKEKILAIN---- 808

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
                       ++   R        ++LE +    S    ++  +P    +      +TG
Sbjct: 809  --------SYPLNFQDRKFIESCLQNYLESDLYNTSG--VVYSEMPFTYHLGERRY-ITG 857

Query: 901  FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
              DR+ L + G   + D+KT          K    Q+   A A+                
Sbjct: 858  KIDRLILEEDG-ATVVDFKTNSMI-GSDLMKAYHLQVMAYALAVSEIC------------ 903

Query: 961  FYIRLKQKFKIDCITNDKKKYSADEL---SEKSLKNLIEIVTLLQNGEQ 1006
                +  K  +     + K    D L    EK    +  I+  ++N + 
Sbjct: 904  ---GIIPKKAVIASLFEGKIVELDILLSSLEKCKAQICSIINRIENDDF 949


>gi|217033350|ref|ZP_03438781.1| hypothetical protein HP9810_9g103 [Helicobacter pylori 98-10]
 gi|216944291|gb|EEC23716.1| hypothetical protein HP9810_9g103 [Helicobacter pylori 98-10]
          Length = 778

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 133/397 (33%), Gaps = 50/397 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +     S  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +    T                   ++S S +   +
Sbjct: 494 DLHIEPIKDAYTLFESTPLKDYQEEEIKATIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +   + +  G+L H  + E  +   +KN   +   + Q++
Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSTIGSLLHEFLKEAYE--KDKNPYALEERLIQLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    K N+ P   +       KI  +F   E++   + I+ + +    +  I+  G+  
Sbjct: 595 E---TKGNITPKERLDTLIALKKI-QAFYVKEKERFNAKIKILDLEKSFETTIQ--GVAF 648

Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID      + + DYK               G     E AQ   D Q+++ A AL
Sbjct: 649 KGRIDRIDKTADNGIILLDYKFKSELKLDNMSEKQRGSLSPIEIAQISADYQMAIYAFAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
           K   +           F+  L++   ++      +  
Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEEEEPVLQAK 740


>gi|260904112|ref|ZP_05912434.1| UvrD/REP helicase [Brevibacterium linens BL2]
          Length = 1086

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 124/1078 (11%), Positives = 272/1078 (25%), Gaps = 176/1078 (16%)

Query: 51   VPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTAD-LLLSYNLNPPVSNIQRL 109
             P +     LR+             P  +S+         A     + +    +S   + 
Sbjct: 52   TPNRDHADVLRNRLAVPRDAVLASAP-ARSISSFAYGIARAAHTTQTGDDLEFISGADQD 110

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET-------- 161
            + LA L+        ++     P  P  +     +       + D ++ +          
Sbjct: 111  VFLADLLAGH-----ELGHGRGPAWPAEITAEVRSTSAFRTEVRDFLNRVMEFDFGVRIP 165

Query: 162  ---EEKKWE------------DLHALKNEKYGMWWLLAADFLKIASK--YWTERLVELNA 204
                    E             L  +        W   A  L+               +A
Sbjct: 166  APSAGGGPEQTPEFVFDFGRSALDRVLEHHRDPRWEAVAQVLEEYLDIMSMPGYGGTDSA 225

Query: 205  SSPVGYQIALMRAEAE--------HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            +        ++R  AE                 ++  G      A+  L+  +     G+
Sbjct: 226  TVLARAAFEILREPAEVTAGRAWTFAPDVVPTVVLADGVQDFPAASWGLLEQLRE--RGS 283

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED------- 309
             +         T  ++       + ++S+  ++T     +    D L    +D       
Sbjct: 284  ALALFGSPETVTGRFHGADASIIDRSASDERFTTVVLPEVKNTADELVAVGDDFGRRITT 343

Query: 310  -VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                      +   R+   +    P D    +     E    +  K  + V    A + R
Sbjct: 344  RWGLQHMPRPDGAARTGESADGIEPVDAGPQQGEGEPEPVASSPDKVETHVFEGAASSYR 403

Query: 369  EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
              A  +   +           A++  + + AR V  EL+  G+        PLS    ++
Sbjct: 404  YLARRVTNFVEDGHA--WSDVAVLCRNTSTARVVANELSASGVATANIM-QPLSIDPATA 460

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
             L  LL      +D  +IA      LA   +      + +                    
Sbjct: 461  PLLELLARTPDFDDDESIAAQALS-LAGSIYVRLDPVQIRR------------------F 501

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
            K +V  +    K++  +        ++     +  +  +L     + +      +  G  
Sbjct: 502  KRVVRKQFPAAKSSNSLAQALRSDIDDSSPPGLATISRMLHAAAEVGSV-DPHEALWGIW 560

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
              +       T  + +   E     +L       TL+   S                  +
Sbjct: 561  EAAGIADKWQT--EVLKDPESVANAHLDSVLRLFTLAEKISD-----RGGFTARSFAGIV 613

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
              + I  +++  +      + +        L    +I+  +NEGVWP    +   L    
Sbjct: 614  AEQDIAQDSLAAQAGTDDLVQVGTPSSLAHLRVPLVIIAEVNEGVWPNPKIRGGILGLDD 673

Query: 669  QSDLNLKT--------------AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
             S + L                      +    +         +   ++ +    +  S 
Sbjct: 674  LSAVLLTGETVTSDPGYHSHAKRTNLREEGELFYTALTRAEEHVIVTAISD--AESNPSP 731

Query: 715  WLQRLLV--------------------------------------LGGTDFFDNLKKRGQ 736
            +   L                                               +   +  +
Sbjct: 732  FFDVLAAGTAKGTQDADGYAITHEDELLPLSLAEMAAHARARLLRAAADSEQETAAEDVE 791

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY---------SFSEIKQLINDPYAVYA 787
             +      L  T+                  +           S S+++   +     + 
Sbjct: 792  EWAQLMAALSATSSTVDPPERWRETEDITSAQPLYGAEDLVKVSPSQVESFTDCSLRWFL 851

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
             R                   GT+ H                     +++ +D  F+  +
Sbjct: 852  TRNGGDRP------GSLAQSLGTIIHAAAENY--------PQGPASAIREFVDEEFKTLD 897

Query: 848  LPPH-IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA---KMAIESIGIHLTGFAD 903
                        L  K++    E+ +   S  E I V        +        +TG  D
Sbjct: 898  FDAEWERDREHVLAMKMADRLGEYIKD--SPGEPIGVEAQVYATGVDENGQEWKVTGRLD 955

Query: 904  RIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAG----SFSQIDCRKVA 958
            RI+    G + I D+KTG   P  +   +    QL +   A+ +G       Q+   K  
Sbjct: 956  RIERTPEG-IRIVDFKTGKNTPTGQEMPRHA--QLGVYQEAINSGSITIGDDQVVDAKAY 1012

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016
                + L+          ++     DE    +   + ++   ++  E  F + +   +
Sbjct: 1013 GAELVFLR---YTKQKKREQSALEIDEDPGWARDLINDVSGRMRAAE--FPARVEPQK 1065


>gi|308371270|ref|ZP_07424390.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003]
 gi|308372459|ref|ZP_07428757.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004]
 gi|308376024|ref|ZP_07445856.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu007]
 gi|308378226|ref|ZP_07481952.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009]
 gi|308329221|gb|EFP18072.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003]
 gi|308333053|gb|EFP21904.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004]
 gi|308344515|gb|EFP33366.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu007]
 gi|308353144|gb|EFP41995.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009]
          Length = 1144

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 115/1097 (10%), Positives = 246/1097 (22%), Gaps = 142/1097 (12%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58
            ++  V    P          A    T+     +   N       V     T++A     +
Sbjct: 70   EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 129

Query: 59   ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
             +RS    + G        +   P++ +        F   LL  Y L  P+    RLL  
Sbjct: 130  RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 184

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
              L  +  + +      L  +   +   S    +W    L + +           +L  L
Sbjct: 185  TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 242

Query: 173  KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +      +                      L        ER+             +  R
Sbjct: 243  VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 302

Query: 217  AEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269
              A         +     +++     +  A   ++S++      +G  +    D      
Sbjct: 303  LAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 362

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             W   +  +    +++   S      + +LL       + ++    +S E   RS+    
Sbjct: 363  GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSV---- 418

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLD 383
                           +    P        V      + + E   IA  LR       +  
Sbjct: 419  --------------AVRALRPRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADG 464

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                 +A++      A  +   L   GI  ++     L +    + + ++L  +      
Sbjct: 465  VKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAG 524

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVA------LRGNKNSYDIMDLKSLVLDRIA 497
             A   ++  P  + G  +      +                   +         + D I+
Sbjct: 525  AAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCLADAIS 584

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
               +                     L   +   +  LV            +  S      
Sbjct: 585  DPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGG 644

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGK------------------------TLSSLFSKIIE 593
                +++                                             ++    ++
Sbjct: 645  WAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVAENGLPPAELTVACDRVQ 704

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
              +   A  +EW  +    +        + +SS L     L   L              +
Sbjct: 705  VLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVL 764

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPT 710
                 A    LS  +     L    +   +    +         +             P 
Sbjct: 765  DTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPR 824

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
              S +L  L  +                       D             +P      R  
Sbjct: 825  GPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRG 884

Query: 771  SF------------------SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                                +        P        +                RG   
Sbjct: 885  DVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPN 944

Query: 813  HNIITELIKKRINKNT------------PEINHLMKQII---------DSHFEKENLPPH 851
            H  ++ L++   +               P+ +  +                       P 
Sbjct: 945  HLSVSSLVELVGDPVGARQRLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLPG 1004

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
                      +++           ++     V +P +M I      + G  D + +   G
Sbjct: 1005 AADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVFVDPDG 1062

Query: 912  FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
               + D+KTG  P    A +    QL++   A    +        V   FY  ++    +
Sbjct: 1063 GATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VRSGITV 1119

Query: 972  DCITNDKKKYSADELSE 988
                       A  L++
Sbjct: 1120 VPDELPAPGELAMLLTD 1136


>gi|116671302|ref|YP_832235.1| UvrD/REP helicase [Arthrobacter sp. FB24]
 gi|116611411|gb|ABK04135.1| UvrD/REP helicase [Arthrobacter sp. FB24]
          Length = 1183

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 103/1090 (9%), Positives = 261/1090 (23%), Gaps = 158/1090 (14%)

Query: 63   EFIEITGKKSTILPIIKSLGDVVEE-KFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
             F E    +  + P + +             L L    +  +    +  +LA  ++   +
Sbjct: 110  IFPEGLLSEDALEPKVSTYHSYASGIVSDYGLRLGVERDVVLLGGAQAWQLASEVVEAFD 169

Query: 122  KLPDIIKDLYPESPLSLPISPAN----AIWLAKNLADIIDIIET-EEKKWEDLHALKNEK 176
               +  +        ++              A+    +++ +   E   +         +
Sbjct: 170  GEYEHFRAAKSTLVKAVIQLAGECAEHLRDPAEVQEWLMERVAEFEGLPYVAGAKKNPTQ 229

Query: 177  YGMWWLLAADFLKIASK---YWTERLVELNASSPVGYQIALMR-----AEAEHLMKGTKG 228
                           ++    + +      A           R       A  + +    
Sbjct: 230  AAGELGAMLRTRASVAEMVGRYADAKRVRGALDFGDLVALAARVASEIPLAAEVERQRFK 289

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
             +++     +  A   L S +     G  V    D +     +   +             
Sbjct: 290  VVLLDEFQDTSHAQLVLFSRLFG--GGHAVTAVGDPNQSIYGFRGASAGQLFHFVREFPA 347

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                 +++     +L     + + + + +N +       +    P        +  +   
Sbjct: 348  LAGDSFAV-APTSYLTTAWRNGRNILSAANVISAPLSAAALQAGPAGERQSAGSVEVPPL 406

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK----------SALITADRNL 398
             P+       V +     + +EA +IA  +      + ++           A++   R  
Sbjct: 407  QPSPAAAEGKVVIGRFATDEDEARAIAADVLRYRLTDFEEPVGADRVAPAMAVLCRRRAQ 466

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
               V+ E    GI  +I     L  T     L + L  +       ++  L+     + G
Sbjct: 467  MECVRREFELRGIPYEIVGLGGLLDTPEIVDLVATLRVLADPGRSDSLMRLLAGARWRIG 526

Query: 459  FPEKYLSR-----AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
              +    R                 ++       +    +    +          +   S
Sbjct: 527  PADLMAFRDWSSFLARRRGNPRTDADEADDPDAAVIESDITDSPSLVEALDWLPREGWTS 586

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
               + L+   +D +      L   +         L + +  +  +  ++           
Sbjct: 587  AHGRTLSPAALDRLHALSAELRQLRGFMGDDLTTL-LGEVERAMLLDIEVAARPGVSIHQ 645

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                 +     ++ F         +   A  W++       G  V         + +L  
Sbjct: 646  ARRNLDAFHDAAAGFLHTSHRVDVLAFLA--WLEAAATEEGGLDVAAPEVNHEAVQLLTV 703

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNP-----FLSRVMQSDLNLKTAEK--------- 679
              S+ L +D + + GLN G +P +           L   ++ D                 
Sbjct: 704  HASKGLEWDVVFVPGLNAGAFPSSRDSRWSSGSAALPWPLRGDRADLPQWDTDQPDQKGW 763

Query: 680  ---------------YIGQAAHDFEMANGTRHLIYTRSLRENN---IPTIASRWLQRLLV 721
                              +    +      + +++  S             S +L  L  
Sbjct: 764  LDAEKNFKADVQAHGEAEERRLAYVAYTRAKFVLWVSSAAWVGSRAGMAEMSPFLSELAP 823

Query: 722  LGGT--------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK---------PFPPLE 764
            L G             + + R +        +   + +      +            P +
Sbjct: 824  LAGIGAGEAETVAAEGSTRGRTEAAAGTAAVVHAASVEESLVPAESPLTQDLELAHWPYD 883

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-------------------R 805
                        +L   P    A               PD                    
Sbjct: 884  PLEGPADPRTGARLRLVPGRRAAMEAAAGRVREALAAGPDTEPAADSDAGEGPRQLRSFA 943

Query: 806  TDRGTLFHNIITELIKKR------------------INKNTPEINHLMKQ---------- 837
             +       ++    ++                   +  +   +   +++          
Sbjct: 944  ANWAKEADLLLERRHRRATVQDVHLPGHISASTFVDLGDDPAAVLARLRRPVPREPGMSA 1003

Query: 838  --------IIDSHFEK-------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
                     ++ HF K       E       I   +    +  +F   E   ++      
Sbjct: 1004 RKGTAFHAWVEEHFGKAGMLELDEAPGSDSHIDEAYGLDSMVETFRNSEWAHRA---PAH 1060

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
            V +P +  I    + + G  D +     G  D+ D+KTG  P     +     QL++   
Sbjct: 1061 VEVPVETRI--GEVVVRGRIDAVFRDADGGWDLVDWKTGRRPAAGQLKV-KAVQLAVYRL 1117

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
            A        +    V   FY     + ++    +       +++   +L     ++    
Sbjct: 1118 AWAR--LKGVPLDSVRAAFYY--VGENQVVRPHDLGTAEQLEDIVTAALGGTTALLNA-- 1171

Query: 1003 NGEQPFISHL 1012
            +G     S  
Sbjct: 1172 SGPASGTSRP 1181


>gi|319788732|ref|YP_004090047.1| hypothetical protein Rumal_3724 [Ruminococcus albus 7]
 gi|315450599|gb|ADU24161.1| hypothetical protein Rumal_3724 [Ruminococcus albus 7]
          Length = 1113

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 108/926 (11%), Positives = 237/926 (25%), Gaps = 154/926 (16%)

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
               L D++  +       + L  +   K      +    L    + +   L + N +  
Sbjct: 117 FIGELTDLLPRLRQSGITPQAL-QMAAAKLEGSVAMKLADLGAIYENYIFELEKANMNDK 175

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
           +          A+         + ++          R++           V   +D    
Sbjct: 176 LSVMEEAAELSAK-CDVFDGRSVFVSAFADFSYDEKRMLEQCIIKGRSLTVSLLIDDSF- 233

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
                             +   THP       L      R+  K       E+    +  
Sbjct: 234 -----------------VSRCHTHP---FDITLAARQCIRDMTKLHDQPLKEIRAEDINC 273

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK- 386
               +   +  + + +      P  +     V ++ AD+  EEA  I   +   + E+  
Sbjct: 274 CHPDIRQLSEHLFDYNK-----PEYKAAGDSVKVLAADDVYEEADYICAEICRLVREDGY 328

Query: 387 --KKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLN-AIFKLND 442
                A+   D      V    + R+ I   +     +  +     + ++    + +   
Sbjct: 329 TFNDIAVTVRDIESFGAVISGVMERYDIPFFLDKRDSVDASAIVHYINTIFRTVLTRKFK 388

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              I  L+K PL         L+   + LE   +R   +     +  +            
Sbjct: 389 TDNIIKLIKSPL------YGILNYEISDLEDYCVRWGVDGDMWNEDFTAA---------- 432

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC-- 560
                     S  D      L   ++  +       T  ++   + +             
Sbjct: 433 --------PDSGIDLGRINELRKRVITPLVSFKEACTGASAAQISRAFYQLLDDLDLSGQ 484

Query: 561 ------LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                   +   ++     +   ++      S    I E     K     + D+ + ++ 
Sbjct: 485 TYSLVKRVSTSDNDTETEMSRGLKQLWTMSLSAVRSIYELLGDEKITMRSYYDLYSLMLS 544

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              V    +K   + I+    SR      L    +NEG++P        L+   +  L L
Sbjct: 545 QMKVSEPPQKLDCVRIVDAAHSRFGGVKVLFAAEVNEGIFPAAVRSRGLLNEHEKELLRL 604

Query: 675 -------KTAEKYIGQAAHDFEMANGTR--HLIYTRSLRE-NNIPTIASRWLQRLLVLGG 724
                    A   + +       A  T    L    S  +        S  ++ +  + G
Sbjct: 605 KEDIDITDNALNSLKREKLAAYTALCTPTDKLYVLYSRSDLLGSEKRPSALVKEVRGILG 664

Query: 725 TDF-----------------------------------FDNLKKRGQCYLDWTRKLDYTT 749
            D                                      +       Y D  R LD   
Sbjct: 665 IDVMNINTLPPDRFCTSYKSAYSVYIEHSRDNTVSVSSIRDSLMGSAYYHDKLRALDEAG 724

Query: 750 KQPHYKRPKPFP---PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
           +   ++  +         ++    S +++      P+  +    L+L      K D D  
Sbjct: 725 RDKPFRLSESCAKEVFFASETAEVSPTKLDNYFKCPFMYFCNYGLRLS--RSQKMDMDGL 782

Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH-------- 858
           ++G + H ++ + I  + ++           + +    +                     
Sbjct: 783 NKGLMIHEVLEKAIGSQ-DRTPEGNREHFLNMTEEQITELIEGSFTKYYNDVFCGDFGKS 841

Query: 859 -----LFHKI------SHSFLEHEEKIQSSIEKIFVNIPAK---------MAI-ESIGIH 897
                 F  +         +++ E    S                     + + +   I 
Sbjct: 842 KTFIYRFENMKQQAFNIVKYVQRELSNGS-FAPAVTEYRLTKENGADHLDLTLKDGRHIV 900

Query: 898 LTGFADR--IDLLKSGF--VDITDYK--TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
           L G  DR  I   ++G   V I DYK     N         ++ Q+ +  + L       
Sbjct: 901 LIGTIDRADIYEDENGRRFVRIVDYKFRRQANFDLGELYCGLNLQMLIYLSVLLETGNPV 960

Query: 952 IDCRKV--ANLFYIRLKQKFKIDCIT 975
               ++  A +FY++L          
Sbjct: 961 NPDMELEQAGVFYLKLIGDAAKFSDD 986


>gi|254779052|ref|YP_003057157.1| hypothetical protein HELPY_0364 [Helicobacter pylori B38]
 gi|254000963|emb|CAX28907.1| Conserved hypothetical protein [Helicobacter pylori B38]
          Length = 776

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/392 (14%), Positives = 132/392 (33%), Gaps = 58/392 (14%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +     S  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEITLSYIESETSKV---SNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +                         +S S +   +
Sbjct: 494 NLHIEPIKDAYTLFAPTPLKDYQEEEIKAAIPKD--------------FNFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   + +    P  +   + +  G+L H ++ E  +   +KN   +   +  ++
Sbjct: 540 TCKRRFYYHYMKRFKESPKDE---NNSAVGSLLHELLKEAYE--KDKNPHALEERLIWLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    +EN+ P   +       KI  +F   E++   + I+ + +    +  I+  G+  
Sbjct: 595 E---TRENITPKERLDTLVALKKI-QAFYLKEKERFKAKIKILDLEKSFETIIQ--GVIF 648

Query: 899 TGFADRIDLLKSGFVDITDYKTGDNP----------KKETAQKLI-------DPQLSLEA 941
            G  DRID      + + DYK                ++  + L        D Q+++ A
Sbjct: 649 KGRIDRIDKTADNEIILLDYK-----FKNDLKLDNMSEKQRKSLRPIEQISTDYQMAIYA 703

Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
            ALK   +      +    F+  L++   ++ 
Sbjct: 704 FALKNLGYK-----EPIKAFFYDLRKGELVEE 730


>gi|56964349|ref|YP_176080.1| hypothetical protein ABC2584 [Bacillus clausii KSM-K16]
 gi|56910592|dbj|BAD65119.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 900

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/752 (11%), Positives = 194/752 (25%), Gaps = 141/752 (18%)

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406
            ++ P        ++L +A  E EE I +   +  + +      A++    +       + 
Sbjct: 206  DRQPVTDGQTGCLSLYKAVTEEEEHIGLIEHIL-TSNTPLSNIAVLFTKSDARAAFMAKA 264

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
             + G+ I  S    L+ T        +  A+                             
Sbjct: 265  KQEGLPIAASNRSYLADTP---FYLWVKEALLTPLPSKEA-----------------RLG 304

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
            A ++L  V     +       L++           ++ V  + +++ +        + + 
Sbjct: 305  AVDSLFAVLGITGRRC-----LRAKQALYAGYGIGDSEVDFFLNQIGKSPLAEGNTIAEK 359

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
                +  L   +   +                T  Q +   +      +   E+G     
Sbjct: 360  AALLVDMLTKMEERTDIPYAP-----------TVKQALLALDGISYAKVETTEDG----- 403

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
                              +            +  +      + +L   +       T+ +
Sbjct: 404  ------------------FRQWFQTFAQTLVIGEEPIPKEGISVLSWADVAAFQGSTVYV 445

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDL---NLKTAEKYIGQAAHDFEMANGT-RHLIYTRS 702
             GL  G +P   +   +      +++    +    +     A  F+    +   +  +  
Sbjct: 446  AGLALGTFPHPYSLLGYFQESDLTEINKRGVPLTSRTRSVQALQFQQLINSGMDVYASYV 505

Query: 703  LR-ENNIPTIASRWLQRLL--------VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
               + + P + S +L                       +K G  Y           +   
Sbjct: 506  CGLDRDSPALPSPFLLDFQLVGFWNYQNRLNNGIGTYSRKDGTAYRGELDHFQKRLQHLQ 565

Query: 754  YKRPK---PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
              +          E      + +  +     P+      +L +       +       GT
Sbjct: 566  LGQEWLSDAQQAKEKAKPAVAVTAFEAYARCPFRYGLEWLLGIKPPAGQNEGLPANKIGT 625

Query: 811  LFHNIITELIK-----------KRINKNTPEINHLMKQIIDSHFEKENLP--PHIDIIWR 857
            L H  I  L +                   E+ + ++      F ++ +P  P+++    
Sbjct: 626  LIHQCIETLYRHKLNVIGKPFSTLSEAEKDEVPYWLESEWRRRFNEDIVPFVPYMNRFEL 685

Query: 858  HLFHKISHSFLE-----HEEKIQSSIEK--------IFVNIPA---KMAIESIGIHLTGF 901
                     +        E +     ++          + +P       + +  + +TG 
Sbjct: 686  EQEE---TWWANKLRLWWEAERARFWDRKELADAYIEGLEVPIVLEDFPLGTTKLKVTGK 742

Query: 902  ADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
             DR+D+  +G   + DYKTG    K E A      QL + +  +            VA  
Sbjct: 743  IDRVDV-ANGEKVLYDYKTGKAALKLEEASHGTKLQLPMYSYIIGK-------QSPVAGA 794

Query: 961  FYIRLKQKFK--------------------IDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
             YI L    K                         N +     +   EK    + E +  
Sbjct: 795  TYISLLDPGKRAGNGVWKPEHVGKQSIFGVSAQCRNKEDALGEEAFMEKWH--IHERLQE 852

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
            L  G Q   +   +         Y  + RV E
Sbjct: 853  LWEGMQ--TNMSVVPLDCAASCPYKAICRVTE 882


>gi|330825225|ref|YP_004388528.1| exonuclease-like protein [Alicycliphilus denitrificans K601]
 gi|329310597|gb|AEB85012.1| exonuclease-like protein [Alicycliphilus denitrificans K601]
          Length = 855

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 98/680 (14%), Positives = 183/680 (26%), Gaps = 78/680 (11%)

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                   L   +         + L  A +  +EA   A      +   +   AL   DR
Sbjct: 208 CAAWGDSALALPLWQAPTGQGRIRLRRALDAEDEAQRAAACAIAHVQAGRVPVALAGTDR 267

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L RR+   L   G+      G  LSTT  ++ + + L A        A+   +K     
Sbjct: 268 ALVRRITALLQGAGLAARDENGWTLSTTRAAAQVMAALRACAWDAGSDAVLDWLK----- 322

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                                                  +  +     +  W  R +   
Sbjct: 323 ------------------------------------AVPVIEEPALRALEQWLRRNAVRR 346

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
              A             +   +  +        +++W +     LQ     +  +  +  
Sbjct: 347 WSGAPGRAQGRPAIAATIAQVEALRAPMRAARPLAEWLRGLRQLLQASGQWDALQQDDAG 406

Query: 577 FEEEGKTLSSLFSK---IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL--FIL 631
                +   +   +       G+  + +  ++     ++++    KP  E+ +     +L
Sbjct: 407 ERVLLELHLAEGLEGSLADAEGAGRRLSPGDFGHWADQVLEATRFKPDWEQDAAADLVVL 466

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
              +     F  L+L G +E             ++  +  L L T E         +  A
Sbjct: 467 PLPQLLARPFAALVLAGCDEKRLQAAPEPPGPWTQAQRQALGLPTREALEAAQRAAWADA 526

Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
                +       E   P +AS  +  L          + +            L      
Sbjct: 527 LQIPWVDVLWRASEGGEPLLASPLVLALPPALHAQAPQDTR------------LPRAVAP 574

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
               RP P           S S    L + PY  YA R L L      + + D+ D GT 
Sbjct: 575 GATPRPWPVGAR-LPVAQLSASAYADLRHCPYRFYALRQLGLQEQDELEAELDKRDFGTW 633

Query: 812 FHNIITELIKKRINKNTPEINHLMKQI------IDSHFEKENLPPHIDIIWRHLFHKISH 865
            H ++    +   +  T +      ++                                 
Sbjct: 634 LHAVLQRFHEGLRDAPTRDAAERSARLDAAASQAREQLGLAGSDFLPYASGWPQLCDGYL 693

Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF----VDITDYKT- 920
            +L+  E   +   +  V     +A++   + L G  DRID  K         + DYKT 
Sbjct: 694 RWLDEHEAAGARFARAEVEAQRHLALKGGSLELVGKLDRIDEAKDAEGRAGTLVIDYKTE 753

Query: 921 GDNPKKETAQKL-IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
           G    +   Q    D QL+  AA +  G       R      Y+ + ++ +         
Sbjct: 754 GSQTTRARVQAGTEDTQLAFYAALMPEG-------RGPLRAAYVNVGERGETRTFEAPDV 806

Query: 980 KYSADELSEKSLKNLIEIVT 999
           +   D L      +   I  
Sbjct: 807 EQLRDALLAGIRDDFDRIAQ 826


>gi|317177172|dbj|BAJ54961.1| hypothetical protein HPF16_0364 [Helicobacter pylori F16]
          Length = 778

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/397 (16%), Positives = 133/397 (33%), Gaps = 50/397 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +     S  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +    T                   ++S S +   +
Sbjct: 494 NLYIEPIKDAYTLFESTPLKDYQEEEIQATIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +   + +  G+L H  + E  +   +KN   +   + Q++
Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSAIGSLLHEFLKEAYE--KDKNPYALEERLIQLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKIFVNIPAKMAIESIGIHL 898
           +    K N+ P   +       KI  +F   E++   + I+ + +    +  I+  G+  
Sbjct: 595 E---TKGNITPKERLDTLIALKKI-QAFYVKEKERFHAKIKILDLEKSFETTIQ--GVAF 648

Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID      V + DYK               G     E AQ   D Q+++ A AL
Sbjct: 649 KGRIDRIDKTADNEVILLDYKFKSELKLDNMSEKQRGSLNPIEIAQISADYQMAIYAFAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
           K   +           F+  L++   ++      +  
Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEEEEPVLQAK 740


>gi|317009003|gb|ADU79583.1| hypothetical protein HPIN_01645 [Helicobacter pylori India7]
          Length = 778

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/397 (17%), Positives = 139/397 (35%), Gaps = 50/397 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +  + +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-SFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ ++ +    E +     S+ L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMVLSYIESETSKV---SKMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +   TT                   ++S S +   +
Sbjct: 494 DLPIEPIKDAYTLFAPSPLKDYQEEEIKTTIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +     +  G+L H ++ E  +   +KN   +   + Q++
Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---SNSIVGSLLHELLKEAYE--KDKNPYALEERLIQLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
                KEN+ P   +       KI  +F   E++   + I+ + +    +  I+  G+  
Sbjct: 595 K---TKENITPKERLDTLIALKKI-QAFYVKEKERFKAKIKILDLEKSFETTIQ--GVMF 648

Query: 899 TGFADRIDLLKSGFVDITDY------------KT--GDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID      + + DY            KT  GD    E AQ   D Q+++ A AL
Sbjct: 649 KGRIDRIDKTADNEMILLDYKFKSELKLDNMSKTQRGDLSPIEIAQISTDYQMAVYAFAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
           K   +           F+  L++   ++      +  
Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGELLEEEGLTLQAK 740


>gi|308063219|gb|ADO05106.1| hypothetical protein HPSAT_01795 [Helicobacter pylori Sat464]
          Length = 778

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 132/389 (33%), Gaps = 50/389 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +     S  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +                        ++S S +   +
Sbjct: 494 DLHIEPIKDAYTLFAPTPLKDYQEEEIQAAIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +     +  G+L H ++ E  +   +KN   +   + Q++
Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---SNSAVGSLLHELLKEAYE--KDKNPYALEERLIQLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    K N+ P   +       KI  +F   E++   + I+ + +    +  I+  G+  
Sbjct: 595 E---TKGNITPKERLDTLIALKKI-QAFYVKEKERFNAKIKILDLEKSFETTIQ--GVAF 648

Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID      + + DYK               G     E AQ   D Q+++ A AL
Sbjct: 649 KGRIDRIDKTADNKIILLDYKFKSDLKLDNMSERQRGGLSPIEIAQISTDYQMAIYAFAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
           K   +      +    F+  L++   ++ 
Sbjct: 709 KNLGYK-----ESIKAFFYDLRKGKLLEE 732


>gi|217031583|ref|ZP_03437088.1| hypothetical protein HPB128_21g141 [Helicobacter pylori B128]
 gi|298736699|ref|YP_003729229.1| hypothetical protein HPB8_1208 [Helicobacter pylori B8]
 gi|216946783|gb|EEC25379.1| hypothetical protein HPB128_21g141 [Helicobacter pylori B128]
 gi|298355893|emb|CBI66765.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 778

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 132/386 (34%), Gaps = 55/386 (14%)

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
               +        + ++ TLE+R + FD +++   NE   P     + FL+  ++  LNL
Sbjct: 391 EANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCDLFLNSALRQSLNL 450

Query: 675 KTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
            T         H +      ++ ++ +    E +    AS  L  L +            
Sbjct: 451 PTLLDKKNLQKHYYYQLFKNSKEIVLSYIESETSK---ASNMLLELNLYIEPIKDAYTLF 507

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                 D+  +    T                   ++S S +   +      Y   + + 
Sbjct: 508 ETSPLKDYQEEEIKATIPKD--------------FSFSASSLNAFLTCKRRFYYHYMKRF 553

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
              P  +   + +  G+L H ++ E  +   +KN   +   + Q+++    +EN+ P   
Sbjct: 554 KESPKDE---NNSAVGSLLHELLKETYE--KDKNPYALEERLIQLLE---TRENITPKER 605

Query: 854 IIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
           +       KI  +F   E++   + I+ + +    +  I+  G+   G  DRID      
Sbjct: 606 LDTLIALKKI-QAFYIKEKERFKAKIKILDLEKSFETTIQ--GVAFKGRIDRIDKTADNE 662

Query: 913 VDITDYKTGDNPK-------KETAQKLIDP----------QLSLEAAALKAGSFSQIDCR 955
           V + DYK              +T ++ + P          Q+++   ALK   +      
Sbjct: 663 VILLDYK---FKSDLKLDNMSKTQREGLSPIEIAQISTDYQMTIYVFALKNLGYK----- 714

Query: 956 KVANLFYIRLKQKFKIDCITNDKKKY 981
           +    F+  L++   ++      +  
Sbjct: 715 EPIKAFFYDLRKGELLEEDELTLQAK 740


>gi|317179247|dbj|BAJ57035.1| hypothetical protein HPF30_0938 [Helicobacter pylori F30]
          Length = 778

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 133/397 (33%), Gaps = 50/397 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +     S  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +    T                   ++S S +   +
Sbjct: 494 NLHIEPIKDAYTLFESTPLKDYQEEEIKATIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   I +    P  +   + +  G+L H  + E  +   +KN   +   + Q++
Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSTIGSLLHEFLKEAYE--KDKNPYALEERLIQLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    K N+ P   +       KI  +F   E++   + I+ + +    +  I+  G+  
Sbjct: 595 E---TKGNITPKERLDTLIALKKI-QAFYVKEKERFNAKIKILDLEKSFETTIQ--GVAF 648

Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID      + + DYK               G     E AQ   D Q+++ A AL
Sbjct: 649 KGRIDRIDKTADNGIILLDYKFKSELKLDNMSEKQRGSLSPIEIAQISADYQMAIYAFAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
           K   +           F+  L++   ++      +  
Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEEEEPVLQAK 740


>gi|15615543|ref|NP_243847.1| hypothetical protein BH2981 [Bacillus halodurans C-125]
 gi|10175603|dbj|BAB06700.1| BH2981 [Bacillus halodurans C-125]
          Length = 955

 Score =  136 bits (341), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 110/871 (12%), Positives = 231/871 (26%), Gaps = 125/871 (14%)

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
             ++DL  L  ++    ++   +  +    ++ + L E        +     +A A+   
Sbjct: 57  ITFDDLAELILDETKESYVAIGE--EDRHLFFQQFLEEDALG--GTHDRHQAKAYADTYG 112

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE---KSTN 280
           +  +  + +   T  + +   L             L   +  I  A           +  
Sbjct: 113 QIKRLGLEVEEYTAGLESLKPLFKRYEQATVNENRLLDPEQKILVAANRLSKRPSLMTGA 172

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
           +        +  QY L   L   D            +      + ++S  F         
Sbjct: 173 VVVDGFYDFSPLQYRLITALKKADAPFHVYLPQATFAIAKQTLNDLLSLGFEQKTVHHRN 232

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLAR 400
                             +++  A    E+   +   + +S         ++  ++    
Sbjct: 233 ------------DLMTESISVKAASTTEEQYYGLMQDIILSEKPYDAFGIVLADEKADEA 280

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            +       G+ +  S       +     L  +L          A  +  + PL +    
Sbjct: 281 VLFRVAKFLGVPLQRSKRRSARDSAILHWLDYVLRM-----PSRAATSWEQLPLLELIM- 334

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                         L     A+             +++E  E  
Sbjct: 335 -----------------------------KLTFKSGASFALAKKSFLATGDVADEGIERL 365

Query: 521 VLLVDHILQC-ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
           + LV   +       + Y         +  +S   +  +    +           L    
Sbjct: 366 IELVRGNVWRKRDTFLAYLHQLERLLDDSELSSLYEQRMR-ESHETWRAQEIAFELHVMT 424

Query: 580 EGKTLSSLFSKIIETGSCIKANAIE--WIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
             K+L     + +E    +        + + +   ++ +    +  +   + I    +  
Sbjct: 425 YLKSLVQEKRQELEEKGLMAFTIRLDLFREWLHYQLERKKFTIEKGRERGVSIHTWRDVP 484

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----NLKTAEKYIGQAAHDFEMANG 693
           L   D L +  +NEG +P   +   ++       L       T   +  +    F+    
Sbjct: 485 LFQGDKLYVTSMNEGTFPAPHSLQGYVQERDLYSLPIPYGAPTQHVFKMKQEAYFDQLFY 544

Query: 694 -TRHLIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT-- 749
               ++++     N N P + S +L R +     ++    +      L    + +     
Sbjct: 545 IAPEIVFSYIKGMNPNEPFLPSPFLDRYVATETYEWTFEKRMEAPFALTVGEQQEKAAHF 604

Query: 750 ---------KQPHYKR-----------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                      P  +R            +      +   T S + ++Q    P+     R
Sbjct: 605 LGKGYVINGLSPEIERIHQHVERLKTGEEALSEPLSAQHTLSVTALEQYARCPFRFGMER 664

Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN------KNTPEINHLMKQIIDSHF 843
           I  +             D G L H +I  + ++         + +      + Q ++S F
Sbjct: 665 IFAVKEPMKKDVRVSPLDLGHLIHQVIQHIYEEEDLIGQPFHRLSETDKGRIGQKVESVF 724

Query: 844 EKENLPPHID-------------IIWRHLFHKISHSFLEHEEKIQSSIEKI------FVN 884
                                    W     K    + E E K     E +       + 
Sbjct: 725 LTLWEEVEQRYLSLSRLELELIKREWLKRLRK----WWEAERKHFWDHEPVKEMAIYSLE 780

Query: 885 IPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSL 939
               + I       I LTG  DRID+   G   I DYKTG    K  E     +  QL L
Sbjct: 781 RSVSLPIRLPSGTTITLTGKVDRIDVDHEG-FTIYDYKTGQAHLKMEEDVPSGLKLQLPL 839

Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
              A    +  Q+  +K     YI LK+  K
Sbjct: 840 YMIA----AGQQLKEKKAYGASYISLKEPEK 866


>gi|184200505|ref|YP_001854712.1| UvrD/REP helicase family protein [Kocuria rhizophila DC2201]
 gi|183580735|dbj|BAG29206.1| UvrD/Rep helicase family protein [Kocuria rhizophila DC2201]
          Length = 1145

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 119/1068 (11%), Positives = 273/1068 (25%), Gaps = 148/1068 (13%)

Query: 46   SVTIYVPTKRAIQELRSEFI-----------------EITGKKSTILPIIKSLGDVVEEK 88
             +     T++A  EL                      +     +   P + +        
Sbjct: 73   EILGVTFTRKAAGELSQRIATKLRMLRHAGLIEEPGGDDDAPAAVQEPTVSTYHSYANSL 132

Query: 89   FTA-DLLLSYNLNPPVSNIQRLLELA-RLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              +  L L    +  +    +  +LA  L+  W   LP+ +  +   +   + +S   + 
Sbjct: 133  VRSYGLRLGIESDTVLLGQAQAWQLASELVRGWDGPLPEAVPAVNTLTGGVIKLSSEASE 192

Query: 147  WL--AKNLADIIDIIET--EEKKWEDLHALKNEKYGMWWLLAA--DFLKIASKYWTERLV 200
             L  A  + + +       ++   +       +            D L    + +     
Sbjct: 193  HLVEAHRIREFVQRFRLACQDVPPDGRKRTPGKDVVSALSRMEQTDVLAQLVERFHAVKR 252

Query: 201  ELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
            + +A           R       A  + +     +++     +  A   L S +    +G
Sbjct: 253  QESALDYGDLLSLAARIVRVDPHARTVERDRFKVVLLDEFQDTSHAQLALFSGLYG--DG 310

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
              V+   D       +   +         N    T    S      FL     +   + +
Sbjct: 311  HCVMAVGDPQQSIYGFRGASSGQLFSFVENFPRRTADGGSEYAATSFLTTAWRNSLSVLD 370

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
            V+N +               T ++          P        V +     + EEA + A
Sbjct: 371  VANAVAAPLRTAPAWSRSAATVEVP------PLDPAPGAVRGRVRVSRYATDTEEARATA 424

Query: 376  IAL---RMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
              +   R + +          A++   R     ++LEL    I  ++     L  T   S
Sbjct: 425  QLIHEQRAAHEGQPLAEMPTMAVLCRRRAQFEPLRLELEALDIPYEVVGLGGLLHTPEVS 484

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS---RAKNALELVALRGNKNSYDI 485
             + ++L+ +       A+A L+     + G  +        A+      +    +     
Sbjct: 485  DVVAMLHVLTDPGRSDALARLLAGARWRLGARDLAALGDWAAELERRHESAARGEQDTRP 544

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
             D+        ++             +S   + ++   +  +      +V  +       
Sbjct: 545  DDVVMADAVDGSSLVEALETLPRDGWVSSRGRSISPEGMRRLRALREDVVALREVLGDEL 604

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
              + I +   +    ++   L            +     +  FS    T       A  W
Sbjct: 605  TTV-IHEVEAVLGLDIELAALPGEDPATARRNLDAFTDQAVQFSATTRTHDVAAFLA--W 661

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF-- 663
            ++  +R  +G  + P   +   + +L    S+ L +D + + GLN+G +P   +      
Sbjct: 662  LETASREENGLDLPPAHTRHDAVQLLTVHASKGLEWDHVHVPGLNQGDFPSTNSSAWTGE 721

Query: 664  ---LSRVMQSDLNLKT-----------------------AEKYIGQAAHDFEMANGTRHL 697
               L   ++ D +                          AE  +G+      +A      
Sbjct: 722  AAKLPWPLRGDASQLPEWSPRVDDVRELEASFGEFAEDVAEHDLGEERRLAYVAFTRAKT 781

Query: 698  IY----TRSLRENNIPTIASRWLQRLLVLGG------TDFFDNLKKRGQCYLDWTRKLDY 747
            +     +        P   S +L+    +                   +       ++  
Sbjct: 782  LLELSGSVYRGTGKKPKEVSPFLREARDMAESATPGFEAGPWADPGELEGNPQLDTRVSA 841

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF------IPHFKK 801
                   + P           T S + +        A        +             +
Sbjct: 842  LWPYDPLEGPVITRTSRDADGTLSETVLPPAHEGRRARAEAAAQAVRNGGFPHLADVPDE 901

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK---QIIDSHFEKENLPPHIDIIWRH 858
            +    + G        E       ++ PE    +     +  S     +  P   +    
Sbjct: 902  ELAAGEAGARVRRWRHEAELLLARRSDPERPRTVHMPSHVSASALVSMDSDPEGFVSTLR 961

Query: 859  L--------FHKISHSFLEH------------------------------------EEKI 874
                       +   +F                                           
Sbjct: 962  RPMPRRPGSAARAGTAFHTWVENFYGDSALLDPDELPGADDHVDEDLDLPRLAETFRASP 1021

Query: 875  QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
             +  +   V +P +  +    + + G  D +     G  ++ D+KTG  P  E  ++   
Sbjct: 1022 WAERQPYAVELPVETPV--GSLTVRGRIDAVFRTADG-WELVDWKTGRVPHGEDLRR-KS 1077

Query: 935  PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
             QL+L   A        I    V+  FY     +        D+++  
Sbjct: 1078 GQLALYRLAFAR--LHGIPLESVSAAFYYVASDRVVRPLDLADEQQLE 1123


>gi|291060258|gb|ADD72993.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 986

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 84/791 (10%), Positives = 201/791 (25%), Gaps = 116/791 (14%)

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
           +  +  T        + Q + A+ L  L    E   R   +    +      ++      
Sbjct: 139 DAVSRNTFDGRDARAYAQSAEAQDLQTLKAHYEQFLRAHALFEPSWDTPQFCAQGNTYVI 198

Query: 336 TSDMRNTDILE--NKIPNIQKCFSDV-------------ALIEADNEREEAISIAIALRM 380
                  D  E    +    +  + V              L    N REE  ++A+ +  
Sbjct: 199 VYPQLMQDFAEYAPVLQEAARATAGVLTFLPVPPFRQDTPLCCFSNVREEITAVALQVER 258

Query: 381 SLD---ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
            L       + +  +     L   V+ E     I  ++ AG  L       + + L   +
Sbjct: 259 LLRTGTPVSQIAVSVANLEELQPYVEREFRLRDIEPEVRAGFCLGAHPAGRMFSQLREFV 318

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM--DLKSLVLDR 495
                  ++  L+ +P  ++  P+   +  +  L+   +R  K S       L++  L  
Sbjct: 319 RSHGTLKSVRALLLNPHIRWADPQGAQAVVQYGLQQACIRSWKQSGTYCNVWLQAFALHC 378

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
             T++   H    Q       +    L+       +               +   S   +
Sbjct: 379 ERTEQERQHQQCAQRFFLTLLRFARALVEARSFVRMQKAYGAFRAACLLPASAHTSGAEE 438

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
              +     C                + L++L  +              +   + +L   
Sbjct: 439 EIASSAFASCSAGEDDAVMARCVCVLQELAALERRFAHV-----VPPDPYSFFVQQLAQQ 493

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
             V  +      L I     +    F    +  ++         +  FL   +++    +
Sbjct: 494 MYVPVRAGVG--LAIFPYRVAAAAPFLHHFVINVSHEASSVRYQRGTFLRADVRAAFGFE 551

Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL------------------- 716
             +                + + ++ S++  +     +R+                    
Sbjct: 552 DEDVTEA----FLSAYATAQTVYFSCSVQAFSGVQRPNRFFSNVHPPVSSTLTGRASQTP 607

Query: 717 -----------------------------QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                                        Q L   G        + + +        +  
Sbjct: 608 SPAGIASETGGAVPQYPAVRYEEDALQAEQDLYAQGAPVPSSLYRTQQERLRKAASLIPA 667

Query: 748 T----------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                         P                  S +++      P A +  R+L +  + 
Sbjct: 668 AGRSYIRDSFAQALPPLTAVLHARHFHHAAVKVSQTDLNLFFRCPAAWFLERVLDVAPLS 727

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ-------IIDSHFEKENLPP 850
              +  D    G   H ++  L  +   ++    +  M++        I+  F +  +  
Sbjct: 728 RRPRLVDPRVLGVFSHVVLERLYNRIACEDECFFSAHMERYRLWTQEAIEQVFSERAVRA 787

Query: 851 -----HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
                 +          +    L+ + +       +      +           G  DRI
Sbjct: 788 GPLVWALRAALSARIRHMVEFVLQFDAQRLDGWRVVRTEKAFEFTDTQCFYT--GLVDRI 845

Query: 906 DLLKSGF-VDITDYKTGDNPKKETAQ------KLIDPQLSLEAAALKAGSFSQIDCRKVA 958
                   + + DYKTG  P            +L D Q+ +    L+   +       V 
Sbjct: 846 SCSPDARSLAVLDYKTGALPALSDYTDCEKKGRLSDFQIPMYVYLLEQAGY------TVT 899

Query: 959 NLFYIRLKQKF 969
           + F++ ++++ 
Sbjct: 900 HAFFLDVRKRD 910


>gi|308182529|ref|YP_003926656.1| hypothetical protein HPPC_01815 [Helicobacter pylori PeCan4]
 gi|308064714|gb|ADO06606.1| hypothetical protein HPPC_01815 [Helicobacter pylori PeCan4]
          Length = 778

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/399 (14%), Positives = 131/399 (32%), Gaps = 54/399 (13%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKVVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +    AS  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEITLSYIESETSK---ASNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +                        ++S S +   +
Sbjct: 494 NLHTEPIKDAYTLFAPSPLKDYQEEEIKAAIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   +      P  +   + +  G+L H ++ E  +   +KN   +   +  ++
Sbjct: 540 TCKRRFYYHYMKCFKESPKDE---NNSAVGSLLHELLKEAYE--KDKNPYALEERLIWLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    +EN+ P   +       KI  +F   E++   + I+ + +    +  I+  G+  
Sbjct: 595 E---TRENITPKERLDTLVALKKI-QAFYLKEKERFKAKIKILDLEKSFETIIQ--GVVF 648

Query: 899 TGFADRIDLLKSGFVDITDY----------------KTGDNPKKETAQKLIDPQLSLEAA 942
            G  DRID      + + DY                K+    +          Q+++ A 
Sbjct: 649 KGRIDRIDKTADNEIILLDYKFKNDLKLDNMSEKQRKSLSPIEISQISTDY--QMAIYAC 706

Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
           ALK   +      +    F+  L++   ++      +  
Sbjct: 707 ALKNLGYK-----EPIKAFFYDLRKGELLEEDELVLQAK 740


>gi|291276799|ref|YP_003516571.1| hypothetical protein HMU05710 [Helicobacter mustelae 12198]
 gi|290963993|emb|CBG39832.1| putative hypothetical protein [Helicobacter mustelae 12198]
          Length = 730

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 123/406 (30%), Gaps = 55/406 (13%)

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
               + + G LE+R ++FD +I+   NE         + FL+  ++  L + T   +    
Sbjct: 375  GGKIPVYGMLETRGMSFDAIIIVDFNEEKIFNFDDSDMFLNTKIRKSLGIPTLMDHKNLQ 434

Query: 685  AHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
             H +       + +  T    +         +L  ++ +   +F  ++            
Sbjct: 435  KHYYYQLIKNAKEVDITYVKDDKPQALH---FLSSIVDVLPGEFDKSIFYFD-------- 483

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                   +        F     Q   +S S ++         + R I  L      ++D 
Sbjct: 484  -------KKPSYVEDDFFGEIPQDFVFSASSLRTFFACKRRFFLRYIKGLR--DVSQRDF 534

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
                   L H  + +      N          ++       + +L   +      L  K 
Sbjct: 535  SAQ---NLLHESLEKAYNAHPNDVIGA-----QKEFYHLVHQASLQDPMQKFASELMVKN 586

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS-GFVDITDYKTGD 922
              SF + E +              +  I  +    +G  DR+D  +      + DYK G 
Sbjct: 587  MDSFWKQEREHYQKYRFYAAEYGFEAEI--LKHKFSGKIDRVDYDEESASYVVVDYKFGK 644

Query: 923  NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
               +   +   D QL L A AL++        + V       ++ + KI           
Sbjct: 645  KIHQSINENTSDFQLILYAMALESEG------KSVEACLVYDIRGEKKISVN-------- 690

Query: 983  ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                 E+  + L E +  L +GE  F      + K     E+  L 
Sbjct: 691  ----LEEGREILQERIKEL-DGEMEFT----QNFKECHYCEFKMLC 727


>gi|308184160|ref|YP_003928293.1| hypothetical protein HPSJM_01900 [Helicobacter pylori SJM180]
 gi|308060080|gb|ADO01976.1| hypothetical protein HPSJM_01900 [Helicobacter pylori SJM180]
          Length = 778

 Score =  135 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 58/399 (14%), Positives = 131/399 (32%), Gaps = 54/399 (13%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDEVVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +    AS  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEITLSYIESETSK---ASSMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +                        ++S S +   +
Sbjct: 494 DLHTEPIKDAYTLFAPTPLKDYQEEEIKAAIPKD--------------FSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   + +    P  +   + +  G+L H ++ E  +   +KN   +   +  ++
Sbjct: 540 TCKRRFYYHYMKRFKESPKDE---NNSAVGSLLHELLKEAYE--KDKNPYVLEERLIWLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAIESIGIHL 898
           +    +EN+ P   +       KI  +F   E++  +  I+ + +    +  I+  G+  
Sbjct: 595 E---TRENITPKERLDTLIALKKI-QAFYTKEKERFNTKIKILDLEKSFETIIQ--GVIF 648

Query: 899 TGFADRIDLLKSGFVDITDY------------KTGD----NPKKETAQKLIDPQLSLEAA 942
            G  DRID      + + DY            KT        +          Q+++ A 
Sbjct: 649 KGRIDRIDKTADNEIILLDYKFKNDLKLDNMSKTQREGLSPIEIAQISTDY--QMTIYAC 706

Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
           ALK   +           F+  L++   ++      +  
Sbjct: 707 ALKNLGYKG-----PIKAFFYDLRKGELLEEDELVLQAK 740


>gi|153953621|ref|YP_001394386.1| hypothetical protein CKL_0996 [Clostridium kluyveri DSM 555]
 gi|219854243|ref|YP_002471365.1| hypothetical protein CKR_0900 [Clostridium kluyveri NBRC 12016]
 gi|251764558|sp|B9E0C6|ADDB_CLOK1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|146346502|gb|EDK33038.1| AddB [Clostridium kluyveri DSM 555]
 gi|219567967|dbj|BAH05951.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1150

 Score =  135 bits (338), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 107/936 (11%), Positives = 252/936 (26%), Gaps = 129/936 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            DII   +      E L    +           + + +    +  RL +          I 
Sbjct: 124  DIIGEFKKYNISPEFLKENLDSIENKSLKNKLEDIGMLFLEFQNRLSKNYIDLEDTLHIL 183

Query: 214  LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
              +   +  +      + I   +   P    ++  +        +   +D     +   +
Sbjct: 184  CEKL--DKSIIFKNSEVWIDEFSTFTPQEYSIIEKIMCSAYRVNITLCMDALGEYSERES 241

Query: 274  ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
            I        +                 + L I  ++              ++  S  +  
Sbjct: 242  IDLFLPIKITER---------------NILQIAEKNNII------YQKPVNLRCSPCYRF 280

Query: 334  PDTSDMRNTDILENKIP--NIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKK 388
             +++ +++        P  N +K   D+ + +A N+  E   IA  +  +  +     K 
Sbjct: 281  KNSTALQHLQHSLFSYPYKNYEKSTEDINIFKALNKYTEIDYIARDIVKACRDKNLRFKD 340

Query: 389  SALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
             A++T D +    +      ++ I   I     +       ++ S +  + K   + ++ 
Sbjct: 341  MAVVTGDLDEYENLIKAVFNQYDIPYFIDKKREIIHNQIVILIISAVEILAKNWSYESVF 400

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
              +K  L    F +  +         +  R   ++       +    +    +      +
Sbjct: 401  RYLKTGLLDLEFDDIDILENYVLANGIRGRQWLDTKPWSFKINYGNFKEDDSEEEQEYLN 460

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
              + + ++ +E  + L + I          +   N  C         +L +         
Sbjct: 461  KINCIRDKVREPILKLSNDIKGKKKGRHICEELYNFLCELKIPEKVEELIIEFRNT---- 516

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
              R      + +    +  +  +I++           + + +        +         
Sbjct: 517  -DRLDKANEYSQIWDIVVDVLDQIVDVLGEQSFGMEIFNEALEIGFSQYEIGVIPPALDQ 575

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---NLK----TAEKY 680
            + +      +  N   L + G+N+G++P   +     +   + +L    L+    T  + 
Sbjct: 576  VLVSNITRIKSYNISALYIAGVNDGIFPVTISPEGIFTDQDRDELKQNGLEIAPNTRSRA 635

Query: 681  IGQAAHDFEMA-NGTRHLIYTRSLRENNIPT------------------IASRWLQRLLV 721
              +    +       ++L  T S+ +                         S  L     
Sbjct: 636  FEEQFLIYATLTIVDKYLTLTYSMSDEEGKAKRPSVVISMIKKIFPKLQEKSNLLDASGY 695

Query: 722  LGGTDFFDNLKKRGQCYLD----------------------------WTRKLDYTTKQ-- 751
             GG +  ++ K      +                             W ++LD       
Sbjct: 696  EGGIEAVNSPKVTFNMLISNIRRNLGHRENINSLWIDVYRWYREHEIWNKRLDTVLGAFY 755

Query: 752  ----PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                           L  +    S S +++    P+  + +  LK+             D
Sbjct: 756  YNNEIKISDLVKIRRLYGKHLNMSVSRLEKFAQCPFGYFVQYGLKVKDRKM--YSLSAPD 813

Query: 808  RGTLFHNIITEL-------IKKRINKNTPEINHLMKQIIDSHFEKE----NLPPHIDIIW 856
             G+  H I+               N +       +  ++D+                   
Sbjct: 814  LGSFMHGILERFSIGLKQKSLTWENVDERCCEENINDLVDNVLYDNPNSILNSSKKYKHV 873

Query: 857  RHLFHKISHS--FLEHEEKIQSSIEKIFVNI---------PAKMAIESIG-IHLTGFADR 904
                 K      +L  +   +         +         P  + ++S   + LTG  DR
Sbjct: 874  TDKLKKTLTRSVWLIAQHMKKGRFIPRAYELVFGEIGDFPPISIELDSGEKVSLTGKVDR 933

Query: 905  IDLLKSG---FVDITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVAN 959
            +D  K     ++ I DYK+G    K          QL +   A L             A 
Sbjct: 934  VDTAKEDIITYIRIVDYKSGTREFKLSDVYYGFQLQLLIYLDAILTEFDKMTKGKSIPAG 993

Query: 960  LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            L Y +L      D I   K+     E+ ++  K+L 
Sbjct: 994  LLYFKL-----EDPIVRTKENIPDHEIEDRITKSLK 1024


>gi|227505536|ref|ZP_03935585.1| helicase [Corynebacterium striatum ATCC 6940]
 gi|227197833|gb|EEI77881.1| helicase [Corynebacterium striatum ATCC 6940]
          Length = 1021

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 119/961 (12%), Positives = 264/961 (27%), Gaps = 69/961 (7%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           ++  LV+       +    + + +   +K +   LR E  +     +    +++S+  + 
Sbjct: 9   VSSLLVDVVLNKLSSGADPSGILVVSTSKESGSILRRELAQHLEDYAAQASMVRSVHSLA 68

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                        L   ++  ++   +  L+     +           S  +        
Sbjct: 69  FALLRTISEEEIRL---ITGAEQDAVIRELLEGQAEENRG--------SWPAEVRPAMTF 117

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
           +  A+ L D++       K   +L  L  +     W  A +FL    +  T++L  L++ 
Sbjct: 118 VGFARQLRDLLLRAIERGKGPHELMELGQKYQQPMWTAAGEFLLEYER--TQQLAGLHSY 175

Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
           S       ++   +E + K     II+  +    P + +L+  ++      +V    D  
Sbjct: 176 SAAELVNEVL-LHSELVEKHPWHTIIVDDAQLLDPTSGKLIEGLSRSTELTVV--AGDPD 232

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +      +             +         +    L +V  +   R  
Sbjct: 233 QAVFAFRGANSEFLTSFPAEHELVLEEPRR--RPAPACISIVDSRSTLRDVVADAVRRRH 290

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
           +  +         +R+T  +      +      V +   D    E   +   L  +L   
Sbjct: 291 LEDEVPWREIAVIVRSTGDIGQVRRTLLAAGVPVHINPTDVILAEQRLVKSILL-ALRAL 349

Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
             + +    +  +   V          +          +     L +LL    +L DF  
Sbjct: 350 DHELSNTELEELVTGPVGGADPVTLRRLIRGLRRWAPQSRGIDSLRALLE--GELPDFSG 407

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           + T  +  + +         RA    ++         ++   L + +             
Sbjct: 408 LLTEREQTILERIRSILDAGRAALRAQVSIEETLWEVWNATGLDARLQAAALRGGATGSQ 467

Query: 506 PHWQSRLSEEDKELAVLLVDHILQC-ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                       + A    +      +   + +   +    G           V  +   
Sbjct: 468 ADRDLDAMMSLFDAAGDYSERRPGASLEAFLRHIEEQELPTGVRDRRTAIPQAVEVITAH 527

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                                  +  + ETGS       + ID++ + I   T    +  
Sbjct: 528 GAVGREW----DTVVIAGAQEGTWPSLGETGSV--FGQEDLIDLLDKGIAPGTPVSHVAS 581

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
                      +   +   L++  ++          + F+     S        +   +A
Sbjct: 582 RLREERRLFHVATTRHRRRLLIAAVDAPEAAVPEEPSRFVGEFALSGSVDVPGAQTRREA 641

Query: 685 AHDFEMANGTRHLIY---------TRSLRENNIP-----TIASRWLQRLLVLGGTDFFDN 730
                 A   R L            R+ RE +       ++ S   Q   V+      + 
Sbjct: 642 TKRLRAAQLPRELGLAVPEPAPVSVRAEREIDPLDVAVLSVPSFVAQLRRVVVSASSGEA 701

Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPK--------PFPPLEAQPRTYSFSEIKQLINDP 782
            + +    L    K       P                          S S ++ L+N P
Sbjct: 702 ERSQAARQLARLAKAGVPGAHPESWWAARSVATDVLADMEEAVAVGRVSPSRVEALLNCP 761

Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
            +        L  +   +  P    RGT+ H  +  L +    +         K+++   
Sbjct: 762 LSAI------LGNLAEEESTPMHLIRGTMAHAYLEALGRGIEPELG-------KKMVMEA 808

Query: 843 FEKENLPPHIDIIW-RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
           F      P   +      F ++     +     +SS E I V +P  + +   GI + G+
Sbjct: 809 FASIVDGPGWKMRSDMAAFERLIDRTHQWAMNSESSFELIGVEVPVSVEV-LPGITVAGY 867

Query: 902 ADRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
            DR+         + D KTG      + A++  +PQL     AL+ G    +     A  
Sbjct: 868 MDRLVKAGD-DYMVVDLKTGNSAVTAKQAKE--NPQLMTYQLALERGELVGVVDADDAEA 924

Query: 961 F 961
            
Sbjct: 925 G 925


>gi|187477415|ref|YP_785439.1| hypothetical protein BAV0912 [Bordetella avium 197N]
 gi|115422001|emb|CAJ48523.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 883

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 73/626 (11%), Positives = 171/626 (27%), Gaps = 46/626 (7%)

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              L  A+       A+   V        +P    + A              +  ++    
Sbjct: 268  RVLDQALQASGGQDALLFNVAVGRPLIEWPALRAALAWLQALADMAAAGSVAVPVLGAAL 327

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547
            L       +         + R               +  C           T        
Sbjct: 328  LAGHCAGDRSERHAAIDARWRRQGRISLNEEAWKQALQYCPRLAQAWEAAMTVWRLGPAR 387

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
                 W       L+ +     R + ++ ++  G     L        +    +    + 
Sbjct: 388  APCDIWMPRIREALKALGFPGERTVDSVGYQLMGALGELLGDFAALAPAVGSLDGRGAVR 447

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +++      + +P+ +  + L +LG LE+   ++D + + GL + V P +   NP L  +
Sbjct: 448  LLSSAARAGSFQPQRDPQARLDVLGLLEAEGGSWDGVWMLGLTDEVLPASPKPNPLLPLM 507

Query: 668  MQSDLNLK--TAEKYIGQAAHDFEMA-NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
            +         T E+    A + +         +I + +  E       S  +        
Sbjct: 508  VLRQAGAPRATPEREREWAENIYAALRTCAPEMIVSCAEHEGERELRPSPLI------AA 561

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                +  +        W +++    + P                T     +     +P  
Sbjct: 562  APLLETARLGADAQTGWPQQVLEDEQGPPLDPASLS--------TGGLDVLDTQARNPQW 613

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDS 841
             + R  L    +  + +   +  RG   H  +    +   ++ +  +      ++ +++ 
Sbjct: 614  AFVRHRLGARELAPYAQAAAQNVRGQFLHRALELAWRMLPDQESLHLSMSEGRLQTLLNE 673

Query: 842  HFEKENL------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
              ++          P +  +       +   ++  E +           + A+       
Sbjct: 674  AVQEAADQELAAYAPALRALECARAAGVLARWMALEAQRLPFAVG---ELEAEHTWRRGA 730

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTG----DNPKKETAQKLIDPQLSLEAAALKAGS--- 948
            + L    DR+D L  G   I DYKTG          +  + I+ QL   A+ L  G+   
Sbjct: 731  LALKLRLDRMDRLADGRAVILDYKTGSAQARPEADWSRARPINLQLPFYASVLGEGAPEV 790

Query: 949  ----FSQIDCRKVANLFYIRLKQKFKIDCITNDKKK---YSADELSEKSLKNLIEIVTLL 1001
                 +QI  R V            +   +  + +        ++       +  +    
Sbjct: 791  AGLILAQIHARHVGAQGLCAEDLGIEGLRVAAESEAFGGRDWAQILAGWRAAIESLADEY 850

Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHL 1027
              G    ++  R   K      +  L
Sbjct: 851  ARGHAANVAWGRDDLKYCDAMPFLRL 876


>gi|300867523|ref|ZP_07112174.1| hypothetical protein OSCI_3400047 [Oscillatoria sp. PCC 6506]
 gi|300334517|emb|CBN57344.1| hypothetical protein OSCI_3400047 [Oscillatoria sp. PCC 6506]
          Length = 983

 Score =  134 bits (337), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 94/1028 (9%), Positives = 258/1028 (25%), Gaps = 153/1028 (14%)

Query: 50   YVPTKRAIQEL----RSEFIEITGKKSTILPIIK-SLGDVVEEKFTADLLLSYNLNPPVS 104
            +  T+RA +EL    R    +I    +++  +   ++                 L   + 
Sbjct: 54   FTFTERASRELKTRIRGHLEDINPDDASLGDMYVGTIHSFC-----------LQLLKEID 102

Query: 105  NIQRLLELARLILIWRNKLP-----DIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
               R  E+   +             +        + L   I               +++I
Sbjct: 103  TQYRNFEVMDDVRQAALITANYHYYEDSGKGIGLNQLRQQIRGEGYWDALDWFTTTLNVI 162

Query: 160  ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
              +    E+L     E             +     + +    +           L     
Sbjct: 163  HLKRIDPENLQ---TEHLSGAVQRYKQLAQERPNCFFDFNTIIG-----ELLSRLSEPAL 214

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               ++     +I+       P    L+  +++      V    D       W     K+ 
Sbjct: 215  LEQVRSKFRYLIVDEYQDVDPRQEELIRILSDGGTRMSVCVVGDDDQAIYGWRGTDIKNI 274

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                       +P  +  +L++        V+           R + ++        +  
Sbjct: 275  LTFEQR-----YPNVTRIELINNFRSTHAIVE-----IANKAVRQLPVNCRLNKAMVARY 324

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR-------------MSLDENK 386
              ++     +        D+   E  ++  EA  +A  ++                 +  
Sbjct: 325  WQSEQDVVVLRERMAELGDIRRQEFPSDEAEAAWVAERIKYLRGTVIEEKDGTERAIDYA 384

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL-LNAIFKLNDFMA 445
              + L+ + R+  +     L   GI   +     L +     ++ +       +   +  
Sbjct: 385  DMAILLRSVRSSGQVFVDALREQGIPFVVKGTRGLFSHDEVLLVQAAFCQLAQREFSYTD 444

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
            +               +++      L     R   +  D       +  +       +  
Sbjct: 445  MTGKFHS--FTVNKTREFVRDTVRRLRD---RQQMSQADATSFLEWIAKQREKLNRQSLP 499

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
               +  +S           D   + +  L      +  +   L         +T  ++V 
Sbjct: 500  KEERDGISRRIYPQ-----DIFQEMLEELGASAETQPWSDDILYNLGRFSHLLTQFESVK 554

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                 +         G   +         G   +                          
Sbjct: 555  QWIEPRDLTPLCLFLGGWAAGKTDD----GGVDEITTPNA-------------------- 590

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
              + I+    ++ L +  + +  ++   +P +       + +   + +            
Sbjct: 591  --VQIMTIHAAKGLEWPVVFVPRVSSSNFPSSRRNQGPETFLTSQEFDRSEYAGGDAGER 648

Query: 686  HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
              + +A     + L  +   R    P+   + +    V G                    
Sbjct: 649  RLWYVALTRCRKFLHISSQDRHRKKPSDFYKEITHDYVKG-------------------- 688

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                       +R  P  P+  +    ++S++      P+    R ++            
Sbjct: 689  ---DGNDPTFRRRDIPIAPVNTELLPTTYSDLNYYWKCPFDYKLRCLMGFGPSVKQDFG- 744

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
                 G   HNI+ E+ ++    +   +      ++ +++  F             ++  
Sbjct: 745  ----YGQQVHNILAEIHQRIAQNSEAHLSITEDFLENLVERQFNLRYTRGKPLEALKNAA 800

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF-------V 913
             +    + +                P +      G  ++G  D + ++ SG        V
Sbjct: 801  KRSIIRYWQFYRDRAELAF--EAEKPFEYVDRQSGALISGTIDLLQIVDSGGQQEYPIPV 858

Query: 914  DITDYKTGD----NPKKETAQKLIDPQLSLEAAALKA--------GSFSQIDCRKVANLF 961
             + D+K+             +  +  QL L AAA++         G+ +     +  +  
Sbjct: 859  CVVDFKSQKWEKDPQSYRERRNDVTRQLRLYAAAVRHALGYDPDNGADAHFLAPEPPDSE 918

Query: 962  YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI-SHLRLSEKSNI 1020
             + L  + +             DE   +  + + + V  +++G  P   S          
Sbjct: 919  LVNLGVEERFTVDVG-------DEYQNQVREEVRQAVEGIKSGLFPLTGSQSDPPR--CS 969

Query: 1021 QSEYDHLA 1028
            + ++  + 
Sbjct: 970  KCDFKKIC 977


>gi|257068317|ref|YP_003154572.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810]
 gi|256559135|gb|ACU84982.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810]
          Length = 1058

 Score =  134 bits (337), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 125/1018 (12%), Positives = 264/1018 (25%), Gaps = 129/1018 (12%)

Query: 47   VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL-SYNLNPPVSN 105
              +  P + A   LR         ++       +   +      AD L         V+ 
Sbjct: 73   TLLLAPRRTAAGRLRDALAVHGAGEA----RAMTPPALGHALVRADALRRGLGEPTLVTG 128

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             ++   LA LI                   L +             L D+I         
Sbjct: 129  AEQDALLAELIAQ------------REAWHLEVDPGARTLPGFRTELRDLITRAAELGLT 176

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWT----ERLVELNASSPVGYQIALMRAEAEH 221
              DL  L +E+    W  AA  L+             L               +R  A+ 
Sbjct: 177  PADLEELGHERGRPAWADAAAILRDYLGVLDLEASAALDAGPRLDSGALVRRAVRLLADP 236

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                    +++  +     A   L++ +A      +V    D  + T             
Sbjct: 237  STPAPFRAVVVDDAQDLTAAGIDLVAALAAAGARVLVCACPDTAVDTFRGALPDAADRLH 296

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            T                    LD        L    + + GR  +               
Sbjct: 297  TLLPRPVEAM----------VLDGAHAQTAPLTAAVDALRGRLPLAGA------------ 334

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNL 398
                             +  + A +  +EA  I  ALR             A++      
Sbjct: 335  ---PAESRRPRAPRPGALVTLRAQDPLDEARLIGSALRDLHHREGVQYDDMAVVCRSGAA 391

Query: 399  ARRVKLELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
               +   L+R G+ + +     PL      + L  +L       D      L    L   
Sbjct: 392  VADLADLLSRTGLPVRVPRRPQPLREVPAIADLLRILEIGLAPQDAPLDPRLATELLRGP 451

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                  L   +    L+              + L+   +  ++            +    
Sbjct: 452  FGDADTLRLRRIRRLLLGAHRAAEPDSETPSEQLLARALVDEEVPGLPAPEARDRAAAPI 511

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                 ++  + +           +       + S               D       L  
Sbjct: 512  HRVREMIRAVREHPEA-----DAQQVLWHAWNASGLAGGWRRAALGSAGDVDGARSRLAA 566

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT-RLIDGETVKPKIEKSSTLFILGTLES 636
                  L    +    T     A A+E ++ I  + +  +T+ P       L +L   + 
Sbjct: 567  SRLDALLELFAAAERLTDRRPGAGALELVEQIRGQAVVEDTLAPAAAARGRLAVLTPAQL 626

Query: 637  RLLNFDTLILGGLNEGVWP-----------------KNTAKNPFLSRVMQSDLNLKTAEK 679
               + DT++L  L EG WP                     +   L    ++   L+  + 
Sbjct: 627  AGEHRDTVVLARLQEGAWPDLRLRSTLFGAAELQLRAGARRGAELPIEPEAVRALQREQV 686

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
               +           R  +   ++++      A       +        + L++      
Sbjct: 687  IADELRLAVSALARARRRVLVTAVQDEQNEPSALFEAFEGMAADPWIDLETLRRDPGPAP 746

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQ--------------------------------- 766
            D  R +    ++   + P+                                         
Sbjct: 747  DARRLVAALRRRLRGEDPQTVRDAALALDALGRAGAPGTDPGRWYHQEPSSTAPLHEDDT 806

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
            P   S S +++ ++ P +    R                   GT  H+ + ++  +    
Sbjct: 807  PIRLSPSALERAVDCPQSWLMERAGGTRAGGP------AQLIGTALHH-LAQVHPRGPAD 859

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
               ++   +  ++ +    E       +       ++  + L      +S+ E + V  P
Sbjct: 860  AEEDLLAELHTLLRAVPGTETWSGRRRVRRAEDAARLLAAHL------RSAGEPLAVEAP 913

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             ++ +    + L G  DRI+   +G + + D KTG    K  A+   D QL+   AA++ 
Sbjct: 914  FEVEL--GRVQLRGSIDRIEGDPTG-LHVVDLKTGRA-AKSAAKAEEDLQLAAYQAAVRE 969

Query: 947  GSFSQI----DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
            G+ ++        ++     + +    K   +        A++ +     +L++ V+ 
Sbjct: 970  GALTEQLGPDAPERLIGAQLVYVGTGGKKAAVRTQTALSRAEDPA--WFDDLVQQVSR 1025


>gi|315652080|ref|ZP_07905081.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485727|gb|EFU76108.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 1128

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 102/978 (10%), Positives = 250/978 (25%), Gaps = 134/978 (13%)

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                 +     L       +  + + L L R+      K                    
Sbjct: 66  SFNRLAYRIFEELDIENPEVLDELDKALILRRIANKVELKAWKKQFQKA----------- 114

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTERLVE 201
                   N+  +I      +   + +    N  +      +  + +      + + +  
Sbjct: 115 ----GFIDNIKSLISEFMQYDISDDFIKEQVNNSEVDSLLKIKLEDIYKLKTGFEDYIA- 169

Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                     + ++     +        I+  G TG  P   R++S +    +       
Sbjct: 170 -GKYFTNEQILDILNENIVNSELLRNSIILFDGYTGFTPIQNRIVSNLMKVADEVRF--- 225

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                   +   +   S    S     S+     + ++   ++IKR     L   S   +
Sbjct: 226 -----SITLGRGVDPDSRLSESDLFFVSSKMILQINEMAKKVNIKRLPDINLNTGSVYRF 280

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
             S  +               +          K  SD+ +    N  +E    A  +   
Sbjct: 281 KNSNDL-----------AFFEEHFLRYDGKKSKEVSDIEINYCMNPLDEIDFTANKILSL 329

Query: 382 LDENK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
           + +     +  A+I  D  +++  +     +  I   +   + +        + + +  I
Sbjct: 330 VKDKGYRYRDIAIIYGDLEDVSDALINRFHQLEIPYYLDEKMEVDNNELVEFINAFIAVI 389

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
            +   + A+   ++  L +F      L      LE       +   +   L         
Sbjct: 390 SENFSYDALNRFLRLGLLRFDKRLVSLLDNY-LLETGIKGYKRLHSEFTYLPRSFG--ED 446

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
             K+      +     +           +I   ++ L      +N      +I    +  
Sbjct: 447 ELKDINEFKDFALSKLDTLYSAISKSKINIKDALSALREIFEKENIEEKLQNIKPELEA- 505

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                      +       +E     + SLF ++            E  D++    +   
Sbjct: 506 ----------RNDFKRAREYEGIFDEVISLFDRLELVLEGESLTKKELSDLLYTGFEEIK 555

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----- 672
           +    ++   + I     +RL +   L + G N+G  P        ++   +  L     
Sbjct: 556 LGMIPDRVDRVVIGDLKRTRLGSIKALFVCGANDGSLPTVKESGGLINDREKRKLKSLGF 615

Query: 673 NLKTAEKYIGQA-AHDFEMANG--TRHLIYTRSLRENNIPTI---------ASRWLQRLL 720
           NL    +                 +  L  + +  +    ++          S ++   +
Sbjct: 616 NLSDTVREDLYTGRFYLYQVLTKPSDKLFISFTGMDFEGKSLRQSILINMIKSIFVNIEI 675

Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP----------------------- 757
                    +  +  +   +  RKL                                   
Sbjct: 676 KNRKEANIYSKFEAKEYLSENLRKLRAKEVIDEEFIRYIATFFDKEFIKRLISAAMYVYK 735

Query: 758 ------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                      L       S + ++     P+  + R  L ++           +D GTL
Sbjct: 736 DSKIGESAARELFGDELRVSVTRLENYNACPFEHFIRYGLGVEERQ--IHSFKASDIGTL 793

Query: 812 FHNIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLP--------PHIDIIWRHLF 860
            H+++ +  +   +++          +  ++D    +             +         
Sbjct: 794 VHDMLEKCFRYAKSRDKKIAEMDESALFALVDEAVSENMASEKNSIFKESNKSKYQLEKI 853

Query: 861 HKI--SHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIGIH--------LTGFADRID-- 906
            ++      +  ++    + E  +          +E++ I         L G  DR+D  
Sbjct: 854 VRMTKLTMLVLSKQLAAGNFEPKYFEKSFGESDNLEALNIELKNNAKMYLRGKIDRVDTY 913

Query: 907 LLKSGFVD-ITDYKTGDNPKKETAQKLI---DPQLSLEAAALKAGSFSQIDCRKVANLFY 962
           + +   +  I DYKTG+   K            QL +   A+      +      A  FY
Sbjct: 914 VDEDATLVKIIDYKTGNM--KWELDMPFYGRALQLVIYLDAVMEQLTKEGKEVLPAAFFY 971

Query: 963 IRLKQKFKIDCITNDKKK 980
             + + F        +  
Sbjct: 972 YHIDEPFLTRDEAKKENA 989


>gi|269955586|ref|YP_003325375.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304267|gb|ACZ29817.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
          Length = 1197

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 97/808 (12%), Positives = 206/808 (25%), Gaps = 90/808 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-V 103
           + V +   ++R    LR +    +  ++   P++++                    P  V
Sbjct: 69  SRVLVLGSSRRLAARLRDQVAAAS-GRTLGAPLVRTASSAAFAVLRTRAAALGEPTPTLV 127

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           S  ++ L LA L+          +       P  LP        L + L D++       
Sbjct: 128 SGPEQDLVLAELLAGHLEGEGAPL-----LLPDGLPSEALGLRGLRQELRDLLMRAAERG 182

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN---------ASSPVGYQIAL 214
            + ++L  L        W +AA   +        RL   +                 +A 
Sbjct: 183 IRPDELAQLGRTHARPEWSMAAQLYEEYLDVTALRLGTPDSGARFDPAVVVDEAAQSLAA 242

Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
              E   + + +   +++     +  ATARL+  + +   GA ++   D       +   
Sbjct: 243 WEEELPGVPRPSWDLVVVDDYQEATVATARLLHALRDS--GARLVLLADPDSAVQGFRGA 300

Query: 275 TEKSTNI-----------------------------------TSSNTTYSTHPQYSLAKL 299
           T                                         T+   T     Q   + +
Sbjct: 301 TPGLVGRASAPPRSLGAFGAEEVVLGTVWRQTPELRDVTRVVTTRIPTVGGPFQRGASAV 360

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
           +        D    G+     Y  +          D  D   T   +          S V
Sbjct: 361 VPDDGASDGDGVAHGDDGVVPYDDASSNVAGHDADDGDDGPGTTSPDGLAAAGGPAPSGV 420

Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS 416
           A+     + +EA  IA  LR     +        +I    +    ++ +L    + + + 
Sbjct: 421 AVAVLAGQAQEAAFIARELRAEHLLHGTPWERMVVIARSGDRLGALRRDLVAASVPVALL 480

Query: 417 A-GIPLSTTLHSSILTSLLNAIFK--LNDFMAIATLVKH---------PLAKFGFPEKYL 464
              +PL      + L + L            A+   +           P          L
Sbjct: 481 GSDVPLREEPAVAPLLAALRVSAGTAPGSLDAVLAELVGGDDTATSSDPDGLTAPEPYPL 540

Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
             A+ A  L+           +      L                     +D   AV L 
Sbjct: 541 LDAETAAALLTSPVGGLDAVALRRLRRALRAEELAGGGGRSSDALLVELLDDPARAVTLP 600

Query: 525 DHILQCITPLVTYKTNKNSTCG---------NLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
           + + +    +        +  G           ++ D T L               +   
Sbjct: 601 NPVKRGAVTVARVLAAGRAAAGEPGATAQTVLWAVWDATGLAARWRDAALAGGPAGVRAD 660

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +    L       ++        A     + ++ +  +++      +  +  L    
Sbjct: 661 RDLDAVLALFRAAETYVDRMPGAPV-AAFVDYLSSQDLPADSLAASASGAHAVEALTPAG 719

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD-----------LNLKTAEKYIGQA 684
           +    +D  ++ G+ +GVWP    ++  L      +           L     ++ +   
Sbjct: 720 AAGREWDVAVVAGVQDGVWPDLRLRDSLLGSQALVELLAGRSQDAHGLGPDARKQVLADE 779

Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
              F +A               +     S +   ++  G  +  D  +      LD    
Sbjct: 780 LRAFAVAISRARRRLL-VTAVEDAEDAPSVFCDLVVPPGEDEERDPRRVEVAAPLDLRGV 838

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
           +             P  P+ A+    S 
Sbjct: 839 VATARATLLRAVAAPSLPVVAEAPPSSV 866



 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 92/813 (11%), Positives = 200/813 (24%), Gaps = 67/813 (8%)

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
              +    +    +RAE        +  ++IA S   + A  R +   +      + L G 
Sbjct: 427  GQAQEAAFIARELRAEHLLHGTPWERMVVIARSGDRLGALRRDLVAAS----VPVALLGS 482

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            D  +       +      +  S  T        LA+L+   D                  
Sbjct: 483  DVPLREEP--AVAPLLAALRVSAGTAPGSLDAVLAELVGGDDTATSSDPDGLTAPEPYPL 540

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                 + + L      +    +   +     +  +      +D            L   L
Sbjct: 541  LDAETAAALLTSPVGGLDAVALRRLRRALRAEELAGGGGRSSD----------ALLVELL 590

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
            D+  +   L    +  A  V   L          AG P +T             +     
Sbjct: 591  DDPARAVTLPNPVKRGAVTVARVLAAGRAA----AGEPGATAQTVLWAVWDATGLAARWR 646

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              A+A       A                 +  + G   +  +  L S  L   +   + 
Sbjct: 647  DAALAGGPAGVRADRDLDAVLALFRAAETYVDRMPGAPVAAFVDYLSSQDLPADSLAASA 706

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
            +   H    L+          V  +      +      ++S  G+ ++ +          
Sbjct: 707  SGA-HAVEALTPAGAAGREWDVAVVAGVQDGVWPDLRLRDSLLGSQALVELLAGRSQDAH 765

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKI-IETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +  D  +++           +S    ++ +      +     + D++    + E   P+
Sbjct: 766  GLGPDARKQVLADELRAFAVAISRARRRLLVTAVEDAEDAPSVFCDLVVPPGEDEERDPR 825

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
              + +    L  + +         +   +  V  +    +   + +      L   E   
Sbjct: 826  RVEVAAPLDLRGVVATARATLLRAVAAPSLPVVAEAPPSSVIDAALPVVAAALPVVEPVE 885

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                           ++ T S    +  T  ++    LL             R    +  
Sbjct: 886  -------TTHEQPGDVVSTGSTTGGHGSTTEAQTAAALLADLAAAGVPEADPRTWYGVAG 938

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                                  +      S S+++ +                       
Sbjct: 939  ASS-------------DAPLWADDAVVPVSPSKVETVTTCALRWSFEAAGGTAADDQ--- 982

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
                   GTL H I   L    ++    E++                 P   +  R    
Sbjct: 983  ---NQTLGTLVHAIAEALPTGSLSALKAELDRR-----WPQLALPPGWPARQL--RQRAE 1032

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
            ++      +      +   + V     + +      L G  DR++    G   + D KTG
Sbjct: 1033 QMIEHLATYLAD---AGSPLAVEAEFDVEVGRA--RLRGKVDRVEDAGDGAAIVADLKTG 1087

Query: 922  D-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               P  + +     PQL     A++AG+         A L ++              +  
Sbjct: 1088 RKAPTVDQSVTH--PQLGAYQLAVEAGAIDGATRSAGARLVFV---GTDTKKPTMRVQPA 1142

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
             + +         L+E        E+ F +H  
Sbjct: 1143 LAPEPDGSSWASALVEGAADTMASER-FAAHPN 1174


>gi|269838113|ref|YP_003320341.1| ATP-dependent nuclease subunit B-like protein [Sphaerobacter
            thermophilus DSM 20745]
 gi|269787376|gb|ACZ39519.1| ATP-dependent nuclease subunit B-like protein [Sphaerobacter
            thermophilus DSM 20745]
          Length = 1066

 Score =  134 bits (336), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 110/1078 (10%), Positives = 234/1078 (21%), Gaps = 171/1078 (15%)

Query: 59   ELRSEFIEITGKKSTILPIIK----SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE--- 111
             L  E            P++      +G  +  +         NL          L    
Sbjct: 17   ALGDELRRWKAVDPLAPPLLLVGDVLIGIYLRRRLARLAGGHVNLPVMTPGHLARLLGEP 76

Query: 112  --LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
              LA            ++ +               A   A+ L  +   +       E  
Sbjct: 77   ALLAEGRTPLPAGGQHLLAEEIALGAGGYFAPVRQAPGFAQALDRLFRELREAGVDPEGF 136

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
             A                L      + ER         +    A          +     
Sbjct: 137  RAAV--SQAEVNQEKCTALAHLYARYAER--RRGFYDGLDTYAAAD------PSRLDAPA 186

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            +++ G +       RL+  +       + LP        A    I   ++          
Sbjct: 187  VLVYGISQPSGLLRRLLERLMETLPVTVFLPRTVPEADRAHREMIDWLTSLGAGEEPAPE 246

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
              P                                          + + + +        
Sbjct: 247  PVPDR----------------------------------------EPTALDHLRATLFHP 266

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLEL 406
                +    V L+ A +   E    A A      E     + + +   D      V    
Sbjct: 267  AGGTEPDGTVRLVSAPDPAREVREAARACLAWAAEGIPFHEMAVVFRRDEPYRALVDEVF 326

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-------GF 459
               GI + +  G PL+       L +LL          A+   +                
Sbjct: 327  RETGIPVYLYGGRPLAEHPQGRRLLALLALAGSPLRRAAVMEFITETHLPDATAERYGPV 386

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                         +V  R    S   +  ++     +  ++ +      + R   E  E 
Sbjct: 387  EPALWDALSREAGIVEGRDQWISRLSLLHQAKRRAVLGEEQEDPERIDERLRTELEAIER 446

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-------DWTKLTVTCLQNVCLDEHRKL 572
                +      +     + + +        ++       +     +  L  +     +  
Sbjct: 447  LSQFIKDFADQLEARPEHASWQAHLDYLRDLAVTYVDRAEPLLDLLAPLARLDALVPQVS 506

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-------IDGETVKPKIEKS 625
               +     + L    +  +     +  N     D +  L       +    V       
Sbjct: 507  FVRFQRTVRRVLERADAGTVLGPDEVPPNGHFGRDGVAVLDVFSLRFLRLRAVAVLGLAE 566

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
             +       ++ LL+ + + L        P   A       +    +        +    
Sbjct: 567  RSFPAPPRQDALLLDRERVRLSAAGRWEIPLRAAGADPEPLLFALAVAAAGERLLLSYPR 626

Query: 686  -----------HDFEMANGT--------------RHLIYTRSLRENNIPTIA-------- 712
                       H F  A                    ++TR                   
Sbjct: 627  SGGDGRTILPSHFFRAAAEALTGRRVGVEDIDSLSRELFTRVPTNRFGAATPEEALTAGE 686

Query: 713  -SRWLQRLLVLGGTDFFDNLKKRGQCYLDWT------RKLDYTTKQPHYKRPKPFPPLEA 765
              R L  LL   G +    L                 R+L                    
Sbjct: 687  YDRTLLALLPQEGAECLARLHPPFARARAAWEARWRGRELTTYDGVLGEAAAAAVARRAG 746

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK--KDPDRTDRGTLFHNIITELIKKR 823
              R  S S ++     P+  +   +L+L+ +      +  +  +RG L H+++   + + 
Sbjct: 747  LRRAISPSRLETYATCPFRFFLSYLLRLEPVEEPDLLERIESLERGALVHDVLQRFLTEC 806

Query: 824  INKNTP------EINHLMKQIIDSHFEKENLP--PHIDIIWRHLFHKISHSFLEHE---- 871
               + P           ++ I +               ++W+     I    +       
Sbjct: 807  GANDPPSRVRREAHLARLRAIAEEECADREQRGLVGYPLLWQVDRRAILEDLITWYDREV 866

Query: 872  EKIQSSIEKIFVNIPAK-------------------MAIESIGIHLTGFADRIDLLKSGF 912
             +   ++      +                      +  + + +   G  DRID      
Sbjct: 867  AERDDALRPGAFELRFGPKWTHDREDSPLSTDDPVPLQADGLTLRFQGRIDRIDWSPDRS 926

Query: 913  -VDITDYKTGDNP---KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
               + DYKTG  P   K +        QL +   A            +     Y  + ++
Sbjct: 927  AFRVVDYKTGKCPGHHKDDRLAGGRALQLPIYLLAASHVLGI---PWERGEAEYFYVTRR 983

Query: 969  FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLRLSEKSNIQSEY 1024
             +   +                 +    +V  L  G     F      S +     +Y
Sbjct: 984  GEFKRVRFSGAT------LRDRWEEFTALVQGLAEGIAAGRFHPVPGPSREHCTYCDY 1035


>gi|218670460|ref|ZP_03520131.1| hypothetical protein RetlG_01777 [Rhizobium etli GR56]
          Length = 197

 Score =  134 bits (336), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 109/194 (56%), Positives = 139/194 (71%)

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
           FI GTLE+RL + DTLILGGLNEG WP  +A NPF+ R+M++++ L+  E+ IGQ AHDF
Sbjct: 2   FIFGTLEARLQSVDTLILGGLNEGSWPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDF 61

Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
           EMANGT HLIY+R+LR+ + PT+ASRWLQRLL LGG  F   LK RG  +L W   +D  
Sbjct: 62  EMANGTCHLIYSRALRQGSTPTVASRWLQRLLALGGEAFEAELKGRGTRFLQWAGLIDRG 121

Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
             Q   +RP P PPL  QP++YSFSE+ +L  DPYA+YARRIL+LD +  F +DP   +R
Sbjct: 122 ESQAPAQRPSPKPPLALQPKSYSFSEVGRLRRDPYAIYARRILRLDPVDAFNRDPGAAER 181

Query: 809 GTLFHNIITELIKK 822
           GTL+H II   I+ 
Sbjct: 182 GTLYHTIIDRFIRA 195


>gi|33600422|ref|NP_887982.1| hypothetical protein BB1436 [Bordetella bronchiseptica RB50]
 gi|33568021|emb|CAE31934.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 886

 Score =  134 bits (336), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/550 (11%), Positives = 164/550 (29%), Gaps = 44/550 (8%)

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
               +        + +   D +  +     + +  +  +        +    +   W    
Sbjct: 343  AALDARWRRQALAHVGPADWQRGLEECPRLAEGWSQAMAIWQAGQRSDTCDA---WAPRL 399

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               L  +     R L ++ ++  G     L        +  + +    + ++       +
Sbjct: 400  KAALTALGFPGERALDSVAYQVMGALGDLLAEFTALAPAAGRLDGRAAVRLLASAARAGS 459

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK-- 675
             +P+ + S+ L +LG LE+    +D + + GL + V P +   NP L   +   +     
Sbjct: 460  FQPQRDPSARLDVLGLLEAEGGAWDGIWVLGLTDDVLPASPKPNPLLPLAVLRQVGAPRA 519

Query: 676  TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            T E+    A   F         +I + +  +       S  + R                
Sbjct: 520  TPEREREWAEGMFMALRRCAPEMIASHAAMDGERELRPSPLIAR--------------AA 565

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
               +           +Q      +  P    +        +     +P   + R  L   
Sbjct: 566  PADWQPGADAQAAVLEQEILDDSQGPPLEAERQSRGGLDVLDTQARNPLWAFVRHRLGGR 625

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---PEINHLMKQIIDSHFEKEN---- 847
             +  +      + RG   H  +  + +   ++           +  +++    +      
Sbjct: 626  AMAPYADAATVSVRGQFLHRALELVWRMLPDQEALHAAMAEGRLAALVEQAIGEAARTEL 685

Query: 848  --LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
               P  +  +       +  ++ + E + Q         I  + + +   + L    DR+
Sbjct: 686  AGYPAALRELECARAAAVLANWFDSEAQRQPF---EVAQIEQEHSWQRGALALKVRLDRM 742

Query: 906  DLLKSGFVDITDYKTGDNP----KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
            D L  G   I DYKTG  P          + ++ QL   A+ L  G+ +++    +A + 
Sbjct: 743  DRLADGRALIVDYKTGAAPGRPESDWARARPVNLQLPFYASVLADGADTEVAGLMLAQIH 802

Query: 962  YIRLKQKFKIDCITNDKKKYSAD-------ELSEKSLKNLIEIVTLLQNG-EQPFISHLR 1013
              ++  +         +     +       +   + L+     V +L +     + +++ 
Sbjct: 803  ARQVSAQGLAADDLGIEGVTPVEQSKAFEGQPWPRILQRWRAAVEMLADEYANGYAANVA 862

Query: 1014 LSEKSNIQSE 1023
            L +      +
Sbjct: 863  LRQDDLKFCD 872


>gi|326692733|ref|ZP_08229738.1| ATP-dependent nuclease, subunit B [Leuconostoc argentinum KCTC 3773]
          Length = 1178

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 103/955 (10%), Positives = 240/955 (25%), Gaps = 142/955 (14%)

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL------KNEKYG 178
            DI+++  P+ P+               L   +  +       +DL  +            
Sbjct: 107  DILREYAPQLPIF--ARMQAKPGFIAALVTQLVELRASRITPQDLLQILNDTTDDATFLR 164

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238
                     L I +       +  +  +P+     L    A+H            G  G 
Sbjct: 165  QTLAAKLRDLAIVADAL-AVKMGTDRMTPLEVLPFLATQLAQH--PLENVAFYFEGFNGF 221

Query: 239  IPATARLMST-VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
              A  +++   V  +P    +L   D        +   +  T             Q    
Sbjct: 222  TSAEWQVVQQLVQRYPVTMALLGDGDQLGRQQPGDVFFKPMTTAQELMRLAKQAQQPV-- 279

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                              +      R++  +   L    + +      +   P       
Sbjct: 280  -----------------RLEQPQTRRTLSQTSEQLLTAWTHLGEYRPYQADQP-----AP 317

Query: 358  DVALIEADNEREEAISIAIALRMSL----DENKKKSALITAD-RNLARRVKLELTRFGIN 412
            D+++  A+N   E   +   +R  L    D + +   ++  D       +   + +  + 
Sbjct: 318  DLSVFAAENTIVEIQEVGRRIRRLLLADPDLHLRDILILARDLTPYTDHIPEVMAQLELP 377

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP-----EKYLSRA 467
              +     ++      +L +LL    +   +  +  ++K  L +         E      
Sbjct: 378  YFLDTDQKMANHPLVELLLNLLMPTSERLQYQNVMAILKTSLLRPFQDQALVPEAEFFDV 437

Query: 468  KNALELVALRGNKNSYDIMDLKS--LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV- 524
             +  +              +L     +         +      + +      E     + 
Sbjct: 438  VSYFDNYLYANKPFEARWRNLDQPFELFTMTDEVSEDDVTLETEDQQINRRIETLRRFIL 497

Query: 525  ---DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
               D + +      T +         L     T   +                    E  
Sbjct: 498  TAFDALQESFDHAKTMREAATGLVMWLQKYHVTDAILAQRDQYLAAGDLARSRQGS-EVW 556

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            +  ++   +++        +  ++  I+T    G            L I      +   +
Sbjct: 557  QLFTATLDELVAIDGDAVFDLAQFKAILTAGFAGAKFSGIPNHLDQLTISEAGIVQSNRY 616

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQ------------SDLNLKTAEKYIGQAAHDFE 689
              L   G      P        ++   +            S     TA++ + +    F 
Sbjct: 617  RHLFFIGGTRTNLPAQAKTTALINDAERLIVQPALQAGEQSKYLQNTAQQQMAEENLLFY 676

Query: 690  MANGTRH--LIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL------- 739
             A  + +  +  +  +          S + QRL+    T      +              
Sbjct: 677  GALSSANTSVTLSYPVLDSAGKIADMSPFYQRLVSTFQTPVDKITRVPADSAALLKNYTS 736

Query: 740  -------------------------------DWTRKLDYTTKQP------HYKRPKPFPP 762
                                               +L+     P         RP+    
Sbjct: 737  TPRATLSELVKLMPTYQQSSAFKALQNAISVTQQDRLERVLSAPNYRNQTEILRPEFVQS 796

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            L  Q    S S+++   N+P A + +  L+L        + +    GTL+H ++ ++I+ 
Sbjct: 797  LFGQQLNVSISQLESYYNNPLAYFLQYGLRLKER--TTNELNVAQTGTLYHAVLEQVIRA 854

Query: 823  RINK---NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE---------- 869
             I +           +  ++      E   P   ++  +   +     L           
Sbjct: 855  LIQRQVSLRDVTTDELLDLVSQAMTTELSLPVYQLLATNGKMRAVRDHLAKISRQLMLNL 914

Query: 870  HEEKIQSSIEKIFVNIPAKMAIES-----------IGIHLTGFADRIDL-LKSGFV-DIT 916
             +    +      V       ++              I + G  DR+D    +G    I 
Sbjct: 915  QQAARANGSYPQAVEQLFGFPVKGALPALEFSGRRGPIKVRGKIDRLDRQDPNGVFGTII 974

Query: 917  DYKT-GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
            DYK+ G       A   +  QL     A +  +   +    +   F+ ++  + +
Sbjct: 975  DYKSNGKQFDWAQAFDGLQMQLLTYWQAAQKNA-EALGVEAIGGAFFAKIAPERR 1028


>gi|222823416|ref|YP_002574990.1| hypothetical protein Cla_0381 [Campylobacter lari RM2100]
 gi|222538638|gb|ACM63739.1| conserved hypothetical protein [Campylobacter lari RM2100]
          Length = 794

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/456 (16%), Positives = 141/456 (30%), Gaps = 56/456 (12%)

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE    +    + I E     + +  + +++    IDG  +         + ++G LESR
Sbjct: 376  EELVIKIKEELAFIKELVRAHELSFCQILELFFMQIDGIKLSSVG--GGEVTVMGLLESR 433

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRH 696
             L +D +I+   N+   PK  +   FL+  ++    L T  +      H +       + 
Sbjct: 434  GLRYDGVIIVDFNDEFIPKRVSSELFLNNEIRKKAGLITHTQRENLQRHYYYTLMAKAKF 493

Query: 697  LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
               +          I SR+L  L         ++       Y+ + ++ +          
Sbjct: 494  AGISYVEN---EEKIKSRFLDELEFFL----VEDKIYSDNAYIKYFQENECKFNLDPITH 546

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                   +   +  +FS    LIN     Y + +L L        +    + G+  H  +
Sbjct: 547  --IKAEHDYFKKALTFSRFHILINYGLDYYYKYVLGLKEPKILDNNLKANELGSFIHKAL 604

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
             E   +  + N  +    +  +      K      ID +   L   +   F   E +   
Sbjct: 605  EEYYNQNKSLNYFDYEKFINIV------KNLKDKQIDALNFALIQAMFKEFQMLENERFK 658

Query: 877  SI---EKIFVNIPAKMAIESIGIHLT--GFADRIDLLKSGFV--DITDYKTGDNPKKETA 929
                 EK       +  I   G+ +T  G  DR+D   +      I DYK+G        
Sbjct: 659  QGYMVEKCEFEQKKEF-ISDNGVKITAFGRIDRLD---NNTYERLIIDYKSGKI-----D 709

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
            +K    QL+     L+       D        +  LK    +     D+K      L  +
Sbjct: 710  EKTY--QLAFYVFLLE-----SKDMLANTKACFYDLKNMKIVYENCTDEKVQELKNLLNE 762

Query: 990  -SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
               + L +      N            +  N  S Y
Sbjct: 763  LVKEPLEK---EFFN-----------QKNDNNYSPY 784


>gi|108562783|ref|YP_627099.1| hypothetical protein HPAG1_0358 [Helicobacter pylori HPAG1]
 gi|107836556|gb|ABF84425.1| hypothetical protein HPAG1_0358 [Helicobacter pylori HPAG1]
          Length = 777

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/426 (14%), Positives = 138/426 (32%), Gaps = 48/426 (11%)

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                +  D +   +  L+N+ L    +  +       +  S +  +       +K  ++
Sbjct: 319 LEDLQTSGDLSASPLLDLENLTLALLEQQSSKEKAPLKEAHSQIMHQYHLLKDTLKNYSL 378

Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
           + +  +         +        + ++ TLE+R + FD +++   NE   P     + F
Sbjct: 379 KDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCDLF 438

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
           L+  ++  LNL T         H +      ++ +  +    E +    AS  L  L + 
Sbjct: 439 LNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEITLSYIESETSK---ASNMLLELDLH 495

Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
                            D+  +                        ++S S +   +   
Sbjct: 496 IEPIKDAYTFFAPSPLKDYQEEEIKAAIPKD--------------FSFSASSLNAFLTCK 541

Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
              Y   + +    P  +     +  G+L H ++ E  +   +KN   +   +  +++  
Sbjct: 542 CRFYYHYMKRFKESPKDE---SNSAVGSLLHELLKEAYE--KDKNPYALEERLIWLLE-- 594

Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHLTGF 901
             ++N+ P   +       KI  +F   E++   + I+ + +    +  I+  G+   G 
Sbjct: 595 -TRKNITPKERLDTLITLKKI-QAFYLKEKERFKAKIKILDLEKSFETTIQ--GVAFKGR 650

Query: 902 ADRIDLLKSGFVDITDY----------------KTGDNPKKETAQKLIDPQLSLEAAALK 945
            DRID      + + DY                K+    +          Q+++ A ALK
Sbjct: 651 IDRIDKTADNEIILLDYKFKNDLKLDNMSEKQRKSLSPIEIAQISTDY--QMAIYAHALK 708

Query: 946 AGSFSQ 951
              +  
Sbjct: 709 NLGYKG 714


>gi|307637050|gb|ADN79500.1| hypothetical protein hp908_0371 [Helicobacter pylori 908]
 gi|325995642|gb|ADZ51047.1| hypothetical protein hp2018_0364 [Helicobacter pylori 2018]
 gi|325997238|gb|ADZ49446.1| hypothetical protein hp2017_0362 [Helicobacter pylori 2017]
          Length = 778

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 132/397 (33%), Gaps = 50/397 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVVADFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E      AS  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEVALSYIESETLK---ASNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +                        ++S S +   +
Sbjct: 494 DLHIEPIKDAYTLFETSPLKDYQEEEIKAAIPK--------------NFSFSASSLNAFL 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y   + +    P  +     +  G+L H ++ E  +   +K    +   + Q++
Sbjct: 540 TCKRRFYYHYMKRFKETPKDE---SNSAVGSLLHELLKEAYE--KDKTPHALEERLIQLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898
           +    +EN+     +       KI  +F   E++   + I  + +    +  I+  G+  
Sbjct: 595 E---TRENVTLKERLDTLVALKKI-QAFYLKEKERFNAEITILDLEKSFETIIQ--GVIF 648

Query: 899 TGFADRIDLLKSGFVDITDY------------KT--GDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID      + + DY            KT  G     E AQ   D Q+++ A AL
Sbjct: 649 KGHIDRIDKTTDNKIILLDYKFKSDLKLDNMSKTQRGGLSPIEIAQISTDYQMAIYAFAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
           K   +      +    F+  L++   ++      +  
Sbjct: 709 KNLGYK-----EPIKAFFYDLRKGELLEEDELILQAK 740


>gi|289555475|ref|ZP_06444685.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605]
 gi|289440107|gb|EFD22600.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605]
          Length = 656

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/605 (11%), Positives = 153/605 (25%), Gaps = 93/605 (15%)

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
               L     R             LV         +        R+       A       
Sbjct: 65   LRQLRRTLQRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGS 124

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            L    P       +++       S   +  +   ++      +   +L        ++  
Sbjct: 125  LGGQDP-------RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDH 177

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
            +           A+    ++ +T L            +  + +L    +    +D +++ 
Sbjct: 178  YV-----SRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIA 232

Query: 648  GLNEGVWPKNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
            GL +G+WP    +   L            ++       L   E+ +   A          
Sbjct: 233  GLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLV 292

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
              + + +    +   + S +   +        +            L     +        
Sbjct: 293  TAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVC 352

Query: 754  YKRPKPFPPLEAQP--------------------------------------RTYSFSEI 775
                                                                 T + S +
Sbjct: 353  APACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTL 412

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            + L + P    A R    +           +  G++ H +  E       ++  ++   +
Sbjct: 413  QALNDCPLRWLAERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAEL 461

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
             + +  H          +         +  +F++   + +S + ++ V +    A+E   
Sbjct: 462  DR-VWGHLPFGAQWYSAN--ELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGS 518

Query: 896  -----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
                 I L G ADR++   +G + I D KTG  P  +   +    QL++   A+  G   
Sbjct: 519  GQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVR 577

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--F 1008
              D    A L Y+       +     D        L+  +      +V  L        F
Sbjct: 578  AGDEPGGARLVYVGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQF 630

Query: 1009 ISHLR 1013
            I+   
Sbjct: 631  IARRN 635


>gi|33595891|ref|NP_883534.1| hypothetical protein BPP1219 [Bordetella parapertussis 12822]
 gi|33565970|emb|CAE36521.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 886

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/550 (11%), Positives = 163/550 (29%), Gaps = 44/550 (8%)

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
               +        + +   D +  +     + +  +  +        +    +   W    
Sbjct: 343  AALDARWRRQALAHVGPADWQRGLEECPRLAEGWSQAMAIWQAGQRSDTCDA---WAPRL 399

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               L  +     R L ++ ++  G     L        +  + +    + ++       +
Sbjct: 400  KAALTALGFPGERALDSVAYQVMGALGDLLAEFTALAPAAGRLDGRAAVRLLASAARAGS 459

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK-- 675
             +P+ + S+ L +LG LE+    +D + + GL   V P +   NP L   +   +     
Sbjct: 460  FQPQRDPSARLDVLGLLEAEGGAWDGIWVLGLTGDVLPASPKPNPLLPLAVLRQVGAPRA 519

Query: 676  TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            T E+    A   F         +I + +  +       S  + R                
Sbjct: 520  TPEREREWAEGMFMALRRCAPEMIASHAAMDGERELRPSPLIAR--------------AA 565

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
               +           +Q      +  P    +        +     +P   + R  L   
Sbjct: 566  PADWQPGADAQAAALEQEILDDSQGPPLEAERQSRGGLDVLDTQARNPLWAFVRHRLGGR 625

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---PEINHLMKQIIDSHFEKEN---- 847
             +  +      + RG   H  +  + +   ++           +  +++    +      
Sbjct: 626  AMAPYADAATVSVRGQFLHRALELVWRMLPDQEALHAAMAEGRLAALVEQAIGEAARTEL 685

Query: 848  --LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
               P  +  +       +  ++ + E + Q         I  + + +   + L    DR+
Sbjct: 686  AGYPAALRELECARATAVLANWFDSEAQRQPF---EVAQIEQEHSWQRGALALKVRLDRM 742

Query: 906  DLLKSGFVDITDYKTGDNP----KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
            D L  G   I DYKTG  P          + ++ QL   A+ L  G+ +++    +A + 
Sbjct: 743  DRLADGRALIVDYKTGAAPGRPESDWARARPVNLQLPFYASVLADGADTEVAGLMLAQIH 802

Query: 962  YIRLKQKFKIDCITNDKKKYSAD-------ELSEKSLKNLIEIVTLLQNG-EQPFISHLR 1013
              ++  +         +     +       +   + L+     V +L +     + +++ 
Sbjct: 803  ARQVSAQGLAADDLGIEGVTPVEQSKAFEGQPWPRILQRWRAAVEMLADEYANGYAANVA 862

Query: 1014 LSEKSNIQSE 1023
            L +      +
Sbjct: 863  LRQDDLKFCD 872



 Score = 38.0 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 70/752 (9%), Positives = 167/752 (22%), Gaps = 33/752 (4%)

Query: 46  SVTIYVPTKRAIQELRSEFIE--ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
              +     R  + L  +      + ++ + LP I  L   + +             P  
Sbjct: 24  DTLVLTVNNRLSRRLTLDLAAQLRSERQVSELPRIMPLSAWLADCAAELAFDERYEVPAY 83

Query: 103 -VSNIQRLLELARLIL--IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
            +S+    L     I        L D  +         L +    A   A    D     
Sbjct: 84  RLSSFATQLVWREAIRLEEADRALLDADQAARLALDADLLVDEWQAHVPAGAETDEYRGF 143

Query: 160 ETEEKKWED-LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
                ++   L  L  E     +    + L+  +      +              L+RA 
Sbjct: 144 SRWRARYRAMLGELDAEDANQGYERVLEALRQGALRAPRHVALAGFVDISPRFARLLRAL 203

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
           A+           +          A                       P   +  ++ + 
Sbjct: 204 ADGGADVVAWRDAVREPAWPQRFEAADRGAEWRAAARWA--ADRLRADPRGRYAIVSPQL 261

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                                L F       +     V   +   +++   +        
Sbjct: 262 EAEAPFARRVLGQALAGQDAPLPFNVAVGRALDEWPAVRAALAWLALLAEVAARGAAEPA 321

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA-LRMSLDENKKKSALITADRN 397
           +    +L        +     A ++A   R+    +  A  +  L+E  + +   +    
Sbjct: 322 LFGAALLAGHCAGDLQEGPRHAALDARWRRQALAHVGPADWQRGLEECPRLAEGWSQAMA 381

Query: 398 LARRVKLELTRFGINIDISA--------GIPLSTTLHSSILTSLLNAIFK---------L 440
           + +  +   T       + A        G     ++   ++ +L + + +          
Sbjct: 382 IWQAGQRSDTCDAWAPRLKAALTALGFPGERALDSVAYQVMGALGDLLAEFTALAPAAGR 441

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
            D  A   L+        F  +    A+  +  +          I  L        A+ K
Sbjct: 442 LDGRAAVRLLASAARAGSFQPQRDPSARLDVLGLLEAEGGAWDGIWVLGLTGDVLPASPK 501

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT----YKTNKNSTCGNLSISDWTKL 556
            N  +P    R     +       +        L         +  +  G   +     +
Sbjct: 502 PNPLLPLAVLRQVGAPRATPEREREWAEGMFMALRRCAPEMIASHAAMDGERELRPSPLI 561

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                 +       +   L  E    +         ++   +     +  + +   +   
Sbjct: 562 ARAAPADWQPGADAQAAALEQEILDDSQGPPLEAERQSRGGLDVLDTQARNPLWAFVRHR 621

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
                +   +    +      L     L+   L +            L+ +++  +    
Sbjct: 622 LGGRAMAPYADAATVSVRGQFLHRALELVWRMLPDQEALHAAMAEGRLAALVEQAIGEAA 681

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLREN--NIPTIASRWLQRLLVLGGTDFFDNLKKR 734
             +  G  A   E+       +            P   ++  Q      G         R
Sbjct: 682 RTELAGYPAALRELECARATAVLANWFDSEAQRQPFEVAQIEQEHSWQRGALALKVRLDR 741

Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                D    +          RP+        
Sbjct: 742 MDRLADGRALIVDYKTGAAPGRPESDWARARP 773


>gi|154149234|ref|YP_001406941.1| hypothetical protein CHAB381_1392 [Campylobacter hominis ATCC
            BAA-381]
 gi|153805243|gb|ABS52250.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
          Length = 803

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/428 (17%), Positives = 139/428 (32%), Gaps = 41/428 (9%)

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                   +I+  L+    +         + +LG LESR + FD +I+   N+ + PK  +
Sbjct: 402  LTFGNLCEILLSLLSEIKI--DDVSGGEVSVLGILESRGMKFDGVIIIDFNDDLIPKRVS 459

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQR 718
               FLS  +++   L   E         +E      + +  +    E+ I          
Sbjct: 460  AEMFLSSKVRAKAGLIGHEDRENLQRFYYESLIKNAKKVAISYQENEDKIVFR------- 512

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                   D  D+     + YL               +   P    +      SFS++   
Sbjct: 513  --FAKKFDIIDDTDYSDEAYLHVFAN-RKNKIFSFLQNDDPVCKSKLFDDALSFSKLDVF 569

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
            ++     Y   +  +      +   D   +G+L H ++ ++       N  +   +  QI
Sbjct: 570  LSCKRKYYYAYLANIKEPKKLETQLDFASKGSLIHEVLQKIYNDFGTFNEQKFAEVYTQI 629

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHS-FLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
                  K  +      +  +   K++   F +  ++              +      G+ 
Sbjct: 630  SK----KYIISDFERELSFYRIKKVNDEIFTDFLKQ---GFNFEAAEKQMETEF--CGVK 680

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
            + G  DRID  K+G   + DYK+G+   K         QL+   A L             
Sbjct: 681  IKGKIDRIDKNKNGETLLNDYKSGNVNDK-------SYQLAFYKALL--------GLDDS 725

Query: 958  ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI-EIVTLLQNGEQPFISHLRLSE 1016
               ++I +K   KI         Y + +    SLK+LI  +    QN  +   S     E
Sbjct: 726  TQSYFISIKNCAKIPSKLGINVAYESKDKIYPSLKDLIFSLKLSAQNEMK--FSRSDYFE 783

Query: 1017 KSNIQSEY 1024
            K   + ++
Sbjct: 784  KEAKECDF 791


>gi|237750241|ref|ZP_04580721.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229374135|gb|EEO24526.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 879

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/451 (15%), Positives = 137/451 (30%), Gaps = 56/451 (12%)

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
              +      +  R I G  +         + ++GTLE+R L+F  +++   ++   P  T
Sbjct: 461  TLHFENLFTLFMREIAGLKINHVA--GGKIKVIGTLEARNLHFKEVLILDFSDDFVPNVT 518

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
              + FL+  ++S   + T +       H +           T     NN   I S  L  
Sbjct: 519  HDDMFLNSKIRSHYGMPTRKDKENLYKHHYYNIMKNTE--ITHISFVNNEEQIESNMLFE 576

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            +     +    +                Y  +   + + +            S + +   
Sbjct: 577  IGCNTESAQSIDTLYSYYDMTKQANITFYEDEYKPFGKVE----------NLSATALNVY 626

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-NTPEINHLMKQ 837
                   Y R +  L       +       G++ H  + E  K  I +  T +  + ++ 
Sbjct: 627  NECTRKFYYRYVEGLKE-----ERTQSQYFGSIIHEWLFESYKPYIEETLTLDSINAIES 681

Query: 838  IIDSHFEKENLPPHIDIIWRHL------------FHKISHSFLEHEEKIQS--SIEKIFV 883
               S F   N     +     +            F     +F E+E +     SI+ + +
Sbjct: 682  SFFSKFYALNTLLTQNNQEESIEIDMKTFVKLDSFTPYMRAFFEYERERVKKYSIKILGL 741

Query: 884  NIPAKMA------IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937
                ++        +  G  L G  DRID++    + + DYK+G +  K +     D Q+
Sbjct: 742  EYTFRIENFRINATQDTGYTLNGAIDRIDMV-DNEIVLYDYKSGASLPKSS-----DLQM 795

Query: 938  SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
               A         Q        L Y  L  K     +  + +K   +E  +K  + L   
Sbjct: 796  PFYAMCATEMPLLQPHNGLHTKLAYYHLGAKDINKILVFNDEKK-LNENIQKIQEMLKTF 854

Query: 998  VTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                        + +     +    +Y  L 
Sbjct: 855  ---------GETNEMTEKLSTCKDCQYALLC 876


>gi|209523272|ref|ZP_03271828.1| UvrD/REP helicase [Arthrospira maxima CS-328]
 gi|209496423|gb|EDZ96722.1| UvrD/REP helicase [Arthrospira maxima CS-328]
          Length = 1070

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 105/898 (11%), Positives = 214/898 (23%), Gaps = 126/898 (14%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            D +  +  E  K      L N + G      A+ L    + + E    L      G  + 
Sbjct: 261  DALKALREELVKPSLNENLINAEVGEADHKLAEMLAALKEAYREVKDHLQKLKWQGRVLT 320

Query: 214  LMRAEAEHLMKGTKGPII------------IAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                E   L      P I            +     + P    ++  +    +  IV   
Sbjct: 321  FADLEIGALTALQNNPTIQLYYQQRWRSFLVDEFQDTNPIQGEILELLTQTGDLTIV--- 377

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
             D       +        N            Q     L       ++ + ++  V + + 
Sbjct: 378  GDKKQSIYGFRRADIGVFNKFRKRIIDH---QGDEIILNQSFRTHQKLINQINQVFSPLL 434

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            G      ++      S      +                         E   IA  L+  
Sbjct: 435  GDLRQDLEAVRIDPPSPRETLQVFVIPKTAETDINQ--------RRIAEGNLIAKTLKEM 486

Query: 382  LDEN---------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
            LD                     A++T            L    I +  S G  L  T  
Sbjct: 487  LDNQIPVFDKQTQQLRPIQPGDIAILTRTWEPLDSYGEALAAAQIPLAPSGGGNLLETQE 546

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
            +    SLL  +    D +A+  L++ P         +    ++ L   +   N + + I 
Sbjct: 547  AKDAWSLLKFLADPGDDIALVALLRSPFFAISDRLLFNVSRQSQLSHKSTSENISWWQI- 605

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
             L +      A   +         +   E     + + D +      +     +      
Sbjct: 606  -LTTASPAEFAKAIDTLKTL--LKQRQIEPPSRLLQIADQLTGYTAIIANLPASNRRLAD 662

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                 +  ++      ++     R            T+           S +   A + +
Sbjct: 663  FSGFRELVQILEQGTDDLFGVVRRLKRLKDKAV---TVERPPINTSNAVSLMTIFAAKGL 719

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            +    ++   +                       FD      +      K+       + 
Sbjct: 720  EWPMVVVADLSRPSPNSSVPV------------YFDPEYGVAIRCKDDDKDLKDPVLYNW 767

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
            +   +   + AE         +     +R  I   + +E             L       
Sbjct: 768  LKYRNQQREEAEALRIL----YVALTRSRDYILLTAPQEKGNYLDK--LYLGLQAANIPI 821

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                +                    P          + +       + + +    P    
Sbjct: 822  TTLEINSDDIIPPVPPSPPPPAINPPLLTNA-----MTSGLFELPVTSLSEYKRCPARFQ 876

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
               IL    +   ++       G L HN +   I+          N   +Q +       
Sbjct: 877  FMYILGHPGLS--EEANQGMIIGQLVHNALEYDIRDIDQLGKFAQNGSNEQSLREAIYLA 934

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
                + +             F+  + +              ++ ++ +G+   G AD I 
Sbjct: 935  QEFDNTEEF---------KRFIHPKNQR-----------EVELKLDILGVTFNGVADLI- 973

Query: 907  LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
                G   + DYKT          +  + QL   A AL             A++ Y+R K
Sbjct: 974  ----GDNWVLDYKTDKV----MRPEHHNLQLWAYAKALNCSE---------AHIAYLRHK 1016

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
            + +               E+  K+      IV  +  G  P     + S ++     Y
Sbjct: 1017 KCYSFSP-----------EILAKTAHEAESIVRDIVEGYYP----PKPSRENCQTCRY 1059


>gi|302536760|ref|ZP_07289102.1| ATP-dependent DNA helicase [Streptomyces sp. C]
 gi|302445655|gb|EFL17471.1| ATP-dependent DNA helicase [Streptomyces sp. C]
          Length = 840

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 93/794 (11%), Positives = 190/794 (23%), Gaps = 96/794 (12%)

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
           + V  H + A    G    + T         +               +    +L     +
Sbjct: 9   AAVRAHRDLAAAREGGSVEVYTYPTAGAELDNIADILRRAHLEDGVPWRDMAVLVRAGGR 68

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                R   ++  +         +  P       +  +   ++              A +
Sbjct: 69  TLPAMRRALIAAGVPAE---TDAASTPLRHEPAVSPLLTALRLTATAALPGGDREEPAPS 125

Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
               A+  A   R + +     +       + A    +     G   D            
Sbjct: 126 AGATALPGAAVPRDAAEAAGSGTPGAAGAGSDAPAAGVGAGADGAGGDPEG--------- 176

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
               +++               L+  PL         L R   AL               
Sbjct: 177 ----SAVTAGGEGWVGVEGALALLTSPLGGM--DAADLRRLGRALRDEERAAGVAVPAPS 230

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
           D+                 P   +         A  L   + +    L    T + +   
Sbjct: 231 DV---------LLARALAEPERLTAHDPAYARGAQRLGLLLRKTRELLQGGGTAEEALWT 281

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
               + W +      +           +L             +   E  +  +       
Sbjct: 282 LWDGTPWPQRLERQARRGGTGGRNADRDLDAVCALFD----NAARAEERTGGRGALNFLE 337

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            +    I  +T+  K  ++  + ++    S+ L +  +++ G+ EG+WP    +   L  
Sbjct: 338 QLEAEDIAADTLTGKAVRTDAVRLMTAHRSKGLEWGLVVVAGVQEGLWPDLRRRGSLLEA 397

Query: 667 VMQSDLNLKTAEKYIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
                  L          A                L+ T            SR+L  L V
Sbjct: 398 DRIGRDGLAEPLTPGALLAEERRLFYVAATRARHRLVVTAVKAPAEDGDQPSRFLTELGV 457

Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------------------------- 756
                      +R         +L  TT  P                             
Sbjct: 458 T--PKDVTGRPRRPLAVPALVAELRATTVDPDASPALRDAAARRLARLAALTDDEDRPLV 515

Query: 757 PKPFPPLE----------------AQPRTYSFSEIKQLIN-DPYAVYARRILKLDFIPHF 799
           P   P                    +P T S S + QL N      +  R +K D     
Sbjct: 516 PAAHPQRWWGLYEPTASTVPLRDRDRPVTLSGSALDQLANTCSLQWFLGREVKADAPST- 574

Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
                    G + H ++ + +          +       +      +             
Sbjct: 575 ----AAQGFGNVVH-VLADEVASGRTPADLAVLMERLDSVWDALAFDAPWKSRQEKDNAR 629

Query: 860 FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITD 917
                  FL      +     +       + +++ G  + + G  DR++    G   + D
Sbjct: 630 --AALERFLRWHTTDRGGRSAVATEHDFDVTLDAGGYAVRIRGSMDRVEADPQGRAYVVD 687

Query: 918 YKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDC 973
           +KTG   P +E   +   PQL++   A++ G+  ++      +      ++L+Q      
Sbjct: 688 FKTGKGAPTREQVARH--PQLAVYQLAVREGAVDEVFDGRRPEPGGAELVQLRQGAAKRD 745

Query: 974 ITNDKKKYSADELS 987
             +   K  A E  
Sbjct: 746 GGDQVPKIQAQEPL 759


>gi|116621025|ref|YP_823181.1| DNA helicase/exodeoxyribonuclease V subunit A [Candidatus Solibacter
            usitatus Ellin6076]
 gi|116224187|gb|ABJ82896.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus Solibacter
            usitatus Ellin6076]
          Length = 1045

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 89/871 (10%), Positives = 218/871 (25%), Gaps = 135/871 (15%)

Query: 154  DIIDIIET--EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
            +++  +    E  ++  + AL    Y     L  + L+   + + +R  +  A      +
Sbjct: 256  NLLKRMREQIEGAEYALITAL----YAPQRELLIEILRRFDRLYRDRKRQGAALDFSDLE 311

Query: 212  IALMRAEAEHLMKGTK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
               +R   EH     +       I++     +    A+L+  +             D + 
Sbjct: 312  EFTVRLLEEHHETRARLQRQFDHILMDEFQDTNGQQAKLIELI---RPPDRFYAVGDINQ 368

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +     +                                 + L  + +    R+ +
Sbjct: 369  SIFGFRHAEPQGFARYRDEIATGD--------------------RHLVQLVDNFRSRAEI 408

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--DE 384
            +S        +       L             V +I A     EA  +A  +      + 
Sbjct: 409  LSAVETLTAGAKGIEDRALVAGRRFDDAPEHSVEVIAAPETAIEAQWVARRIMELSGPEP 468

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
              K  A++  +  +           GI   ++ G     +   + LT LL AI    D +
Sbjct: 469  QFKDFAVLVRNTEVIPEFTDAFDAAGIPYLVNRGRGFYASREVNDLTHLLRAIANPRDEI 528

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
            ++A +++ PL           +                     L+      +       H
Sbjct: 529  SLAVVLRSPLVNASVEALLRLKMNGENL------------GAALQRSEDALLQRFGARLH 576

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                +      D+ L   + D        +  +          +S+ ++        +  
Sbjct: 577  EWRGRREYVTFDRLLLEAIDDCGYPASGNVDKFLAQARDAASRMSLDEFVMELAQVRE-- 634

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                          E  +   +           +  ++ + ++     +           
Sbjct: 635  --------------ENPREPDAPPEDSANAVKIMTVHSAKGLEFPVVFVA---------- 670

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
               +          + F      G           K+      ++ +   +  E+     
Sbjct: 671  --AIHKGVDTGVPAVAFSRHYGLGARWRNPASGQDKDDLFQHALRREWKQREEEESNRL- 727

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD-------------FFDNL 731
                 M    + LI + +             ++RL +  GT               +   
Sbjct: 728  -FYVAMTRAEQRLILSFTAAARKPQNWDKLVMERLRIEPGTPGDAVKIFEAPDGKQWKAR 786

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                Q   +   +     ++   +   P    E      + + +      P   Y  R L
Sbjct: 787  ILIAQAAPELLTRERTPNEEITVQFAVPPVVEEQHDSNATVTALALFAGCPRKYYLNRYL 846

Query: 792  KLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
              +            D  + GT  H ++        + +   +                 
Sbjct: 847  GFEGRAARRSEGAALDAGEFGTQVHALLA--GTAVASPDPEAV----------------- 887

Query: 849  PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908
                         +++  F +     ++    + +       +      + G  D +   
Sbjct: 888  -------------RLAEVFRQSPLGRRAENA-VRIEREFDFLLAIADQVIVGQVD-LWFE 932

Query: 909  KSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
            ++G + + DYKT      E + +  D   QL L A A++      +  R     F   L+
Sbjct: 933  ENGELLVVDYKTDTVSASEASHRARDYGLQLRLYALAIER-----MTGRAPDRGFVHFLR 987

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
                I+         S +++         ++
Sbjct: 988  PNVAIEVDLTPSLIESPEQIVRDFQDAQSKL 1018


>gi|315124915|ref|YP_004066919.1| hypothetical protein ICDCCJ07001_1412 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315018637|gb|ADT66730.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 712

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 117/350 (33%), Gaps = 20/350 (5%)

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             +E    +      I +          E I +    I   ++         + ++G LE
Sbjct: 376 EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694
           SR L FD +IL   NE + PK +    FL+  ++    L + ++        +E      
Sbjct: 434 SRGLCFDGVILVDFNEEIIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
             +       E       SR+L  L      DFF       + YL+  +      K    
Sbjct: 494 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546

Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
               P           SFS    L N     Y R IL L       ++    ++G   H 
Sbjct: 547 PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606

Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
           ++    K  +N +         ++  +  +KE    +I  +   +F      F ++E++ 
Sbjct: 607 MLEIYYKNYVNNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660

Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVD-ITDYKT 920
            S         +     + + +  I L G  DRID  K G +  I  +K+
Sbjct: 661 FSKGFYVAHTELELNNILKLGADSIKLKGTIDRIDSSKEGNLIMIIKWKS 710


>gi|325680672|ref|ZP_08160210.1| putative ATP-dependent nuclease subunit B [Ruminococcus albus 8]
 gi|324107452|gb|EGC01730.1| putative ATP-dependent nuclease subunit B [Ruminococcus albus 8]
          Length = 1115

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 108/929 (11%), Positives = 248/929 (26%), Gaps = 165/929 (17%)

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               E L  L  E+      L    L     Y+ E L   N +  +      +   A+  
Sbjct: 132 GITPEVL-QLAGERLEGSVSLKLLDLTQIFTYYLEELERANMTDSLSIMEEAVE-LADIN 189

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
                  + ++  T       R++           V   LD +                 
Sbjct: 190 NLFDGRQVFVSAFTDFSYDERRMLEICVRKAEKLTVSLLLDDNF---------------- 233

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                  THP           D+     ++L +++ +                  +  + 
Sbjct: 234 --VKRCRTHP----------FDVTVGTQQKLVDMAKDHNKEIRFTHA---EDAVCESWDI 278

Query: 343 DILENKIPNIQK-----CFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITA 394
            +L  ++ ++ +         V ++ AD+  EEA  I      L  S         +   
Sbjct: 279 MLLSERLYDLDRKEYHTANDSVQVMAADDMYEEADYICAEICQLVSSKKYVYNDIVVAVR 338

Query: 395 DRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLL-NAIFKLNDFMAIATLVKH 452
           D +    V    L ++ I   +     +  +     + ++    + +      I  L+K 
Sbjct: 339 DMSNFGSVIASALEKYDIPYFLDKRDSVDASAIVHYICNIFKTVLTRKFRTENILKLIKS 398

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           PL         L+     LE   +R   +    ++                    + +  
Sbjct: 399 PLFGL------LNYEICDLEDYCVRWGVDGDMWLE-------------------PFTAEP 433

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH--- 569
                E    L   +++ +        +  +   +L+  +         Q   L +    
Sbjct: 434 DGVGLERINDLRAKVIEPLIKFKNACKDTTAEQISLAFYELLGELKISEQTYSLVKRVST 493

Query: 570 -RKLPNLWFEEEGKTLSSL----FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                +L      K L ++       I       K +   + D+   ++    V    +K
Sbjct: 494 SDNESDLEMSRGLKQLWTMSLSAVKSIHNILGKEKISLRSYFDLYELMLSQMKVSSPPQK 553

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT-------A 677
              + ++    SR+     +    +N+G++P +      ++   ++ L LK        A
Sbjct: 554 LDCVRVIDAGHSRIGEVRVVFAAEVNDGIFPSSVKNGGLMTEHEKNLLKLKENILIESNA 613

Query: 678 EKYIGQAAHDFEMANGTR--HLIYTRSLREN-NIPTIASRWLQRLLVLGGT--------- 725
              +                 L  T S  +        S  ++ +  + G          
Sbjct: 614 LSDLMHEKLAAYSVLCAPDDRLYVTYSRADLLGNRKRPSSLVREVKEVLGVKEKSINTLP 673

Query: 726 --------------------------DFFDNLKKRGQCYLDWTRKLDYTTKQPH---YKR 756
                                         +     + Y +    L     +      K 
Sbjct: 674 VDFFCTSMKTAYSKYIEHSRDNTAAVSSIRDSLMVSREYYEKLSALKQANAKEPFRLSKE 733

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                    +    S +++      P+  +    L L          D  ++G + H ++
Sbjct: 734 SAKEAFFAGETAEVSPTKLDNYFKCPFMYFCNYGLHLSRSEKLD--MDGLNKGLMIHEVL 791

Query: 817 TEL-------IKKRINKNTPEINHLMKQIIDSHF----------EKENLPPHIDIIWRHL 859
            +         ++   +        + +++++ F          +       +       
Sbjct: 792 EKAISTENITPEESRRQFLEMDEEKITELVENSFNNYYSEVFCGDFGKTKTFVYRFESMK 851

Query: 860 FHKI-SHSFLEHEEKIQSSIEKIFVNIPA---------KMAI-ESIGIHLTGFADRIDLL 908
                   +++ E     S   +                + + +   I L G  DR D+L
Sbjct: 852 KQAFNIVKYVQKELA-AGSFAPVVTEYKLKNEEGEDHLDLTLKDGRHIVLIGTIDRADIL 910

Query: 909 K-SGF--VDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLF 961
           +  G   V I DYK   + K +       ++ Q+ +  + L           ++  A +F
Sbjct: 911 EEDGKKYVRIIDYKFRKHAKFDLGELYCGLNLQMLIYLSILLETGNPINTDMELHQAGVF 970

Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKS 990
           Y++L           +    S DEL + +
Sbjct: 971 YLKLIGDGSDYSADRE---ISEDELYKAA 996


>gi|291165682|gb|EFE27730.1| ATP-dependent nuclease subunit B [Filifactor alocis ATCC 35896]
          Length = 1122

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 108/883 (12%), Positives = 230/883 (26%), Gaps = 134/883 (15%)

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
             L    A        +  ++  ++  + +   L  L N      +      +    +  
Sbjct: 102 FELYRPVAQRQGFLTKMESLLTELKRNDIQSTALKELANRTEDKLFSQKLKEVSFLQEQM 161

Query: 196 TERLVELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
             RL    A         L+   A    +           G         R++  +  + 
Sbjct: 162 ELRLTGHYA-DSEDKMNMLVNQIASCGWIQDLDF---YFFGFHSFTAIEYRIVEQLIMYA 217

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
           +   +                       +S         Q ++ KL +            
Sbjct: 218 HNVYITL---------------PMEEKESSDTINLFQTTQETVKKLRE------------ 250

Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
                      +    +    +   +   ++ + K     K  S V+L  A    EE   
Sbjct: 251 -FAQKSNIPVKVEFEDTNPVLEEFQLLGKNLFDYKNVVYPKETSSVSLTVAKTTEEEVHW 309

Query: 374 IAIALRMSLDENK---KKSALITADRNLARRV-KLELTRFGINIDISAGIPLSTTLHSSI 429
           I   +   + E     ++  L+  D     R  +     + I + +     L  +     
Sbjct: 310 ICNKICELVQEEGYRYREIGLLVTDIREYGRFIRQIFPMYHIPVFVDEKKDLIHSPAMHA 369

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           + SL + +     +  + + +K     F   E            +              +
Sbjct: 370 IFSLWDIVSNGFRYEDVFSFLKAGFTSFSQSEIERLENFVLAHKIRGEMYFQ-------E 422

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
              L    +++    +   + R  +        +    +     +  +     S     +
Sbjct: 423 KYFLKGEESEEERHQILDIRQRFEDMLLPFYRSIKKKGM-----VEEFAKQSVSFLIEKN 477

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
                +  V  L+   L+E          +      S+  +++E        A E+ DI+
Sbjct: 478 FPQKIEEYVEELKESGLEE----FADENRQVWNIFVSILEQMVELLGSRMVKATEFRDIL 533

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
              I G  V         + +     SR    + L + GL++G++PK   +   L    +
Sbjct: 534 YAGIQGHKVGILPPSQDQVIVGTLDRSRTTPTEHLFVLGLHDGMFPKVQKEGSVLEEEER 593

Query: 670 SDLNL------KTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTI-AS------- 713
           + L           EK   +    +          +  + +    +   +  S       
Sbjct: 594 TKLLQYGFHLSSVREKLQAEERLSWYNHITQTKTAVYLSYAEMSYDKKVLYPSFYVDKIR 653

Query: 714 -----------------------RWLQRLLVLGGTDFFD----NLKKRGQCYLDWTRKLD 746
                                   +LQ+L  +      +      ++R  C   W     
Sbjct: 654 RQFPKMNVIVPKRYDDSMLYSKQAFLQQLAQMTRPVLEESDSLEQEERAFCLQGWDYLKQ 713

Query: 747 YTTKQPHYKRPKPFPPLEAQPRT-----------YSFSEIKQLINDPYAVYARRILKLDF 795
              +          P +   P+            +S S ++Q    PY  +  R L    
Sbjct: 714 QQEETLFQSAVSENPSVRYIPQKYVTSLYGNKVYFSASGLEQYARCPYKHFIHRAL--SP 771

Query: 796 IPHFKKDPDRTDRGTLFHNIITE---LIKKRIN--------KNTPEINHLMKQIIDSHFE 844
               + + + TD G L H  I E    +KK           +N  EIN +  Q  D    
Sbjct: 772 KERARYEMEETDIGILVHGCIDEFTDFLKKHPELSEQWDEKRNQEEINAIFSQYADKMLG 831

Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKI--QSSIEKIFVNIPAK-------MAIESIG 895
                   +        K +    ++  +     + +     +          + +    
Sbjct: 832 VSFEDNARNQYLLRKIRKTTEETAKYVVRHLNLGTFKIWGQEVGFGYGKDYPAVELIEDT 891

Query: 896 IHLTGFADRIDLL--KSGFVD-ITDYKTGDNP-KKETAQKLID 934
            +L G  DR+D+          + DYKTG        A +  D
Sbjct: 892 AYLRGRIDRVDVCHKDDKDYIKVIDYKTGKKTFHLSDAWQGYD 934


>gi|171912576|ref|ZP_02928046.1| hypothetical protein VspiD_15390 [Verrucomicrobium spinosum DSM 4136]
          Length = 955

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 91/715 (12%), Positives = 209/715 (29%), Gaps = 83/715 (11%)

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSAL 391
                        +       ++       +       ++A  +++ L   L    ++ A+
Sbjct: 239  RAGFDEIGMPRILSWGDDAGLECPLPHDRMHRVPGAEDQAR-LSVRLLGELAATGQEVAV 297

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
               D  L   ++  LT  G+ +   AG          +L +   A      +      ++
Sbjct: 298  GACDPALNSVLEGTLTSQGVRVYNPAGRSARQHGLVQVLRAGWRAARS-ASWRDWLPFLR 356

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
                                       ++       +          + + TH+P   + 
Sbjct: 357  -----------------------LDDVSRALCAETGMLVTKYYEQLDEFDATHLPP--TV 391

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
               +           + Q ++ +V +     +     ++ ++        +     EH+K
Sbjct: 392  RDAQSLAGLHEAWAELGQVLSAVVRHAEGWAAETCEGAVRNFLLWLYGETEFDSGREHQK 451

Query: 572  LPNLWFEEEGKTLSSLFS-KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
                 F +  +    +   +     S   A A  W+ ++   ++   +     ++  + +
Sbjct: 452  HHGELFGQVVRLAMQMDEGRAAAGASSSPAEAAAWLGLVFDALEEGQLTDLRGEADLV-L 510

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
             G LE        L++ G N+   P     +PFL    ++ L L        + A+  + 
Sbjct: 511  HGWLELLWEPAPGLVITGFNDEHVPGTLTADPFLPDKAKAALGLPCQATRRARDAYFLKA 570

Query: 691  AN------GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                     T H++  R   E +     SR L             +L           R 
Sbjct: 571  MAEQRSGSRTLHIVLGRHTAEGDA-LRPSRLLLDASDDDLPLRVKHLFPAEDEVQAPPRP 629

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
            L     Q         P  +      S + +++ +  P+  Y   +L ++ +    ++  
Sbjct: 630  LRTQAFQL------TPPLRKWTRSAISPTALRRYLQCPFRFYLTDVLGMESVSTGLRELS 683

Query: 805  RTDRGTLFHNIITELIKKRI---NKNTPEINHLMKQIIDS--HFEKENLPPHIDIIWRHL 859
                G L H +      +     +++   I   ++  +D          P     +    
Sbjct: 684  PATVGDLIHQVFKAFADETAVAESRDAGIIAAWLEAELDRRAALYFGAEPLFSVTLQVES 743

Query: 860  FHKISHSFLEHEEK-IQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDL-LKSGFVDI 915
              +   +F E + +  +     +       A   ++  G+ L+G  DRID   K+G + +
Sbjct: 744  LRQRLAAFAEKQAELREQGWRILRAEEKIQADWGVDLGGVILSGKIDRIDRNDKTGMLRV 803

Query: 916  TDYKTGDNPKKE--------------------------TAQKLIDPQLSLEAAALKAGSF 949
             DYKT     +E                           A+   D QL L A A+     
Sbjct: 804  IDYKTSRKKPEEAHHRSARKELLADENQSWKCFDDARGKARCWTDLQLPLYARAVS---- 859

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004
            +++         Y  L     +  +     +    +L + +     E V  +++G
Sbjct: 860  AKLADGAPVEAAYFLL--PATVSEVKTHVWEGLDADLMDAAGDCACEAVRRIRDG 912



 Score = 38.0 bits (86), Expect = 9.9,   Method: Composition-based stats.
 Identities = 82/766 (10%), Positives = 186/766 (24%), Gaps = 49/766 (6%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
           L L+   I VPT   ++ LR       G + +    + +   +           +    P
Sbjct: 32  LDLSDTLIIVPTAETVRRLREALAVEAGARDS----VVTAPHLWHAALVFQPKATTM--P 85

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE- 160
             S +Q       ++             L   + L      +  +  A  +A+ +  +  
Sbjct: 86  LASPLQERAAWTEVLAKV---------PLGEMTALFPAAPESQDLTWASAVAETVGTLRK 136

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
           T       L A      G+        L    + + E L     +     +    R   E
Sbjct: 137 TLGAGGYTLAAGAEALAGLDDPARWSQLARLEELYLETLEAWGLADGESAKQGAAR---E 193

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
             +      + +     + P     +  V+      I +         A ++ I      
Sbjct: 194 ATLPEGVKQVKVFAVADAPPLFGVWLRHVSEKVPSGIFVQA--PAEGRAGFDEIGMPRIL 251

Query: 281 ITSSNTTYSTHPQY-SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
               +        +  + ++    D  R  V+ LG ++      ++      L       
Sbjct: 252 SWGDDAGLECPLPHDRMHRVPGAEDQARLSVRLLGELAATGQEVAVGACDPALNSVLEGT 311

Query: 340 RNTDILENKIPNIQKCFS-DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
             +  +    P  +      +  +     R    +        L  +    AL      L
Sbjct: 312 LTSQGVRVYNPAGRSARQHGLVQVLRAGWRAARSASWRDWLPFLRLDDVSRALCAETGML 371

Query: 399 ARRVKLELTRFG----INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
             +   +L  F           A          + L  +L+A+ +  +  A         
Sbjct: 372 VTKYYEQLDEFDATHLPPTVRDAQSLAGLHEAWAELGQVLSAVVRHAEGWAAE------- 424

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G    +L       E  + R ++  +            +  Q     +   + R + 
Sbjct: 425 TCEGAVRNFLLWLYGETEFDSGREHQKHHG----------ELFGQVVRLAMQMDEGRAAA 474

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV--CLDEHRKL 572
                       +      L   +        +L +  W +L       +         +
Sbjct: 475 GASSSPAEAAAWLGLVFDALEEGQLTDLRGEADLVLHGWLELLWEPAPGLVITGFNDEHV 534

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
           P     +      +  +  +   +  +A    ++  +     G      +    T     
Sbjct: 535 PGTLTADPFLPDKAKAALGLPCQATRRARDAYFLKAMAEQRSGSRTLHIVLGRHTAEGDA 594

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-SDLNLKTAEKYIGQAAHDFEMA 691
              SRLL   +     L          +     R ++     L    +   ++A      
Sbjct: 595 LRPSRLLLDASDDDLPLRVKHLFPAEDEVQAPPRPLRTQAFQLTPPLRKWTRSAISPTAL 654

Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT--T 749
                  +   L +       S  L+ L      D    + K            D     
Sbjct: 655 RRYLQCPFRFYLTDVLGMESVSTGLRELSPATVGDLIHQVFKAFADETAVAESRDAGIIA 714

Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                +  +           +S +   + +    A +A +  +L  
Sbjct: 715 AWLEAELDRRAALYFGAEPLFSVTLQVESLRQRLAAFAEKQAELRE 760


>gi|34556981|ref|NP_906796.1| hypothetical protein WS0562 [Wolinella succinogenes DSM 1740]
 gi|34482696|emb|CAE09696.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 732

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 74/487 (15%), Positives = 153/487 (31%), Gaps = 42/487 (8%)

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            V + I  ++    +P  +        +        + +  +    + + +       S+
Sbjct: 228 WVNEGIEPERIAIILPDERFADYLRLFDKERNFNYAMGERFSDSSLFLSLQKEIERLESL 287

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFE---EEGKTLSSLFSKIIETGSCIKANAIEWID 607
                  +                L  +   E  + L    + +      ++       +
Sbjct: 288 PP-PASLLELSPLGLEALRAFTLELESQGEIEASRLLQEGITLLAPLERILENRPPS--E 344

Query: 608 IITRLIDG-ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
           I+  L+    T +        + ++G LE+R LNFD +++   NEG+ PK + K+ FL+ 
Sbjct: 345 ILRLLLKEFATRRIDDVGGGRIRVMGILETRGLNFDRVVVVDFNEGLIPKPSDKDLFLNS 404

Query: 667 VMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
            +++  +L T  +      H +  +    +  +      E N P+     LQ  +  G  
Sbjct: 405 SIRAKCHLPTRLERENLQKHYYLSLLRRAKESVLAFVSNEQNEPSRMLLELQTPIFSGKE 464

Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
            +   L    + +  +  ++  +                     +S S ++  +      
Sbjct: 465 LYERTLFGAPREHKGFVEEIIDSIPWE--------------RERFSHSRLQSFLLCKRQY 510

Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
           Y R I          +       G   H  + E        +        ++   S  +K
Sbjct: 511 YYRYIRGYSQREEENES---AWLGKTVHRWLKESF------DPSISQKKRREHFLSLLQK 561

Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI-EKIFVNIPAKMAIESIGIHLTGFADR 904
           E  P            K    F E E++      + +++    +  +E I     GF DR
Sbjct: 562 ERFPSAKLAFEARATAKKMERFFEREKERAKEGAQPLWLEERVEFEVEGIDFV--GFIDR 619

Query: 905 IDLLKSGFVDITDYKTGDNPKK---ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
           +D +      I DYK     K       +K  D Q +L A AL+     ++        F
Sbjct: 620 VDRVGE-EYWILDYKLKKALKVDKERDLEKTSDFQFALYAQALRQ----RVGGAVAIRAF 674

Query: 962 YIRLKQK 968
           Y  L + 
Sbjct: 675 YYDLFKG 681


>gi|296392993|ref|YP_003657877.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
 gi|296180140|gb|ADG97046.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
          Length = 1025

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 115/1033 (11%), Positives = 261/1033 (25%), Gaps = 149/1033 (14%)

Query: 47   VTIYVPTKRAIQELRS----EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
              +    + A   LR+      +  + + +   P++++          A    S N  P 
Sbjct: 57   TVVLTSNRAAADRLRAQIHGRLLRASPQLALAKPLVRTTHSYAFALLEARARASGNPPPR 116

Query: 103  -VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             +   ++   L  L                         +   ++     L  +      
Sbjct: 117  LIPAAEQDATLREL------------AIDQAARWPEPLRAALGSMEFTAQLRSVFQRAAQ 164

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER----LVELNASSPVGYQIALMRA 217
                 E L AL   +    W+ A    +   +  T R    + +  AS        L+ A
Sbjct: 165  HGHGPEGLIALGTARARPEWVAAGRTWREYEQVMTLRGAVGMADPAASPGALDAAELLGA 224

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
              + + +     +   G  GS                  + +       P A   +    
Sbjct: 225  ALDAVAEDPDLLLHPLGKPGSRF---------------VVFVDDAQHFDPQAARLSSLAA 269

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                 +  T       +          + RE  +     S  +      +  +  P    
Sbjct: 270  RRADLAVCTVDPDQSVFWFQGAQTGPGLWREAEQLRLGPSQRLSSSVAQLVAAVAPRSAP 329

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397
             +           +  +  + +    A        ++  A         + + L+ +   
Sbjct: 330  QVATCR------ESAGEAQTRLYPTVAAQAEGVVEALCRAHARDQVPWSRMAVLVRSVPV 383

Query: 398  LARRVKLELTRFGINIDISA--GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            L   +        + + ++A  G   + T  S++L+ L     K  +      L+  P+A
Sbjct: 384  LEPSLARAAALADVPLRLAAMSGPLAANTAVSALLSLLKALARKALEPATALELLVSPIA 443

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                 +    R                     L++   DR +       V   +     E
Sbjct: 444  GASVAQARSLRRL-------------------LRAQEPDRPSLDLLAELVLGAREHDVPE 484

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                   +     + +       T +       S S   +                    
Sbjct: 485  PVLRLRRVWRAACEALGAPA--PTVETVLWAAWSASGLEERLPE--------------GD 528

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
            +        ++   +  +        A     +    +           S  + +L    
Sbjct: 529  FAAVRALFAAARAQRAADAADAAAELARFAERVERERLPVSATLGDGGGSDAVTLLSAHA 588

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD--------LNLKTAEKYIGQAAHD 687
            +    +D +++ G+ EG+WP  +  +  L     +           L   ++ + Q    
Sbjct: 589  AAGQEWDVVVVCGVQEGLWPGFSESSSLLGVDELAAALAGTPAEAKLDARKQVLAQERRL 648

Query: 688  FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
              +A          +  E     + SR+L  L  L          +R            +
Sbjct: 649  LYLACSRAREQLLVTAVEGEGDLVPSRFLAPLAPLALRTQEHGPAERAAAAPPPAPATPW 708

Query: 748  TTKQPHYKRPKPF-----------------------------------------PPLEAQ 766
            ++     +                                              P  +  
Sbjct: 709  SSAGVVAELRALACGADQHRAQRAAAALAALAQAGVIGAHPKSWHGLAEVSTSEPLAKDG 768

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
              T S S ++QL++ P      R +                 GT  H  +   +  R  +
Sbjct: 769  SLTLSPSRVQQLLDCPLRWLFERAMPAAPGE-------AAAIGTAVH--LLASVADRFPE 819

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
            +  +                          +    ++  +F+      +  + ++ V IP
Sbjct: 820  DELQAALDAAARAADERSARPPWAAQRRREQ--LARLFAAFMAWRNASRGELTQVGVEIP 877

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             +M++   G+ L G  DR++    G + I D KT   P+   + +  DPQL+     ++ 
Sbjct: 878  VEMSV--SGVTLRGRIDRLERTARGELVIVDLKTAATPRSAASVR-EDPQLACYQLVVRM 934

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                      VA    + L    +       ++    +E + +    + E        + 
Sbjct: 935  -----ARDEPVAGGKLVYLGALRQETGAAEREQPALTEEEAAQWNSTIREAAAAAAGPQ- 988

Query: 1007 PFISHLRLSEKSN 1019
             F +       S 
Sbjct: 989  -FRARPNQHCGSC 1000


>gi|254502806|ref|ZP_05114957.1| double-strand break repair helicase AddA [Labrenzia alexandrii
            DFL-11]
 gi|222438877|gb|EEE45556.1| double-strand break repair helicase AddA [Labrenzia alexandrii
            DFL-11]
          Length = 1180

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 108/1011 (10%), Positives = 236/1011 (23%), Gaps = 126/1011 (12%)

Query: 22   IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL------RSEFIEITGKKSTIL 75
              A  +         D      LASV   +    A + L      R  F   T     + 
Sbjct: 169  AEARASVLHKAEMEPDSPFGQALASVIDLMSDGGAQKALDELIQNRDAFRRWTVDAGGLE 228

Query: 76   PIIKSLGD---------VVEEKFTADLLLSYNLNPPVSNIQRLLELAR--------LILI 118
            P + +L D         + +          ++LN  +S  + L    +        L+  
Sbjct: 229  PALHALADDLEIDPAQQLSDFDRRFRSECPFDLNTCLSYSEALNTGTKTDQGKAEALVAA 288

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIW---LAKNLADIIDIIETEEKKWEDLHALKNE 175
             R   P + ++ +    L+  +    ++    + +   D++D +  E+ +  +L   +  
Sbjct: 289  IRQTDPGLFREAWLPVFLTGKLEARKSLATKKVTEAFPDMVDALIAEQARLLELLD-ERR 347

Query: 176  KYGMWW--LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------- 226
            K   +   +           Y+                +      A+             
Sbjct: 348  KVVTYAGTVALLRLADAVITYYERAKTAKGYLDFEDLVVKTATLLAKSDAAQWVQYKLDQ 407

Query: 227  -KGPIIIAGSTGSIPATARLMSTVA--------NHPNGAIVLPGLDCHIPTAIWNTITEK 277
                I++  +  + P    +++ +A               +    D       +      
Sbjct: 408  GLDHILVDEAQDTSPRQWEVVNALAAEFFVGDSGREKVRTLFAVGDEKQSIYSFQGAVPA 467

Query: 278  STNITSSNTTYSTH----------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +      +               Q S     D L    E  K               +
Sbjct: 468  YFDQMRRAFSRQAQSAEQEFHSVNLQLSFRSTPDVLGAVDEVFKDASAYQGLSQDGVAPV 527

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE-----REEAISIAIALRMSL 382
             ++               E ++         V  + + +      +  A +I   +    
Sbjct: 528  HEAIRLDPGIVDLWPLETEAEVSEPDDWRLPVDHVGSGSPMLKVAKRIASTIKGWMLDGT 587

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
             E      L+         +  EL    I    S  + L+  +    L +L   +    D
Sbjct: 588  AEPGDVMILVRKRGPFVEALNRELKNLNIPAAGSDRLILTDHIAVQDLAALGRFLLLPED 647

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             +++A ++K PL      +  L       +     G      +   ++    +   ++  
Sbjct: 648  DLSLAAVLKSPLFG--LDDMDLLEVARETDEKIRPGTLWQMLVKRSEASTKWQEVRRQLE 705

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                        E     +                   +     +  + ++  LT+   Q
Sbjct: 706  DWRARADFVPPYEFYARLL--------GADGGRQAFRRRLGVEVDDVLDEFLALTIAYEQ 757

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                     L   W       +    +        +  +  + ++    ++      P  
Sbjct: 758  AGTPGLEGFLA--WMAAAPTEIKRELTNTKGMVRIMTVHGSKGLEARIVILVDPGGAPVS 815

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                  F+        L+  +L+                          +      +   
Sbjct: 816  AIHDPSFLPRPRPGHDLSPPSLVWL-----------PPKTDRISWHDEAVETLRKGQEEE 864

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                 +         +                    L+          L       + W 
Sbjct: 865  YRRLLYVALTRAEDRLIVCGWEPKRGAH--DNCWYSLVSAALKPQAKELHDADGDVVGWR 922

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
             + D +        P P  P      +     +    + P      R ++L     F+  
Sbjct: 923  WQKDPSAGTGRA--PSPGHPRTDASVSGDDHTLPDWAHQPVK-PVSRKIRLQPSKAFEDM 979

Query: 803  PD----------------------RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             D                        +RG L H ++  L               + Q + 
Sbjct: 980  EDKDGIEPVPAVARLAAGRQPDSWPLERGRLVHRLLELLPDLPAASRMAAAEAFLDQALK 1039

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIH 897
              F                  K     LE  E      E     +     I       + 
Sbjct: 1040 PVFAPFKDT----------LLKELAQVLEKPEFQPVFSENSRAEVALTGTIRSANGTDVE 1089

Query: 898  LTGFADRIDLLKSGFVDITDYKTG-DNP-KKETAQKLIDPQLSLEAAALKA 946
            ++G  DR+ +  +  V I DYKT    P   +        QLS+    L+ 
Sbjct: 1090 VSGQIDRLIVDGN-EVVIVDYKTNLQPPETLDQVPLEYRAQLSVYKELLRQ 1139


>gi|91974684|ref|YP_567343.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
 gi|91681140|gb|ABE37442.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
            palustris BisB5]
          Length = 1159

 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 95/857 (11%), Positives = 214/857 (24%), Gaps = 89/857 (10%)

Query: 139  PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-GMWWLLAADFLKIASKYWTE 197
            P        +A      ++ ++ E  + EDL   +                   ++    
Sbjct: 302  PRKSLATKKIADAAPGFVEDLKREGARLEDLLERRRALLMRERTRALLVIAADVAERIRR 361

Query: 198  RLVELNASSPVGYQIALMRAEAEHLMKGTK-------GPIIIAGSTGSIPATARLMSTV- 249
               E             +                     ++I  +  + P    +++ + 
Sbjct: 362  EKQERGLLDYDDLIDKTLAMLDSGASSWVHFKLDRGVDHVLIDEAQDTSPKQWDIVAHLI 421

Query: 250  --------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH---------- 291
                    A       V    D       +     K             H          
Sbjct: 422  AEFTAGEGARDGVRRTVFAVGDEKQSIFSFQGAVPKEFAERRDLLQRRFHGAGLNFEKVS 481

Query: 292  PQYSLAKLLDFLDIKREDVKR--LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
              YS       L       +   +    +      +  S +   P   D+   ++ ++K 
Sbjct: 482  FNYSFRSGATILQSVDHVFRDPDIYRSIHADAAYPLHQSLADAGPSVIDLWPLELPDDKQ 541

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALR--------------MSLDENKKKSALITAD 395
                      A+ E   E   A  +   +                          L+   
Sbjct: 542  NIEGWRAPFDAVSETSPEVRLAQKVQAEIASLIAGGTMTGSLGDRRRLRFGDVLVLVRRR 601

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
             +    V   L R GI +  +  + L+  +    L +L +A+    D +A+A  +K PL 
Sbjct: 602  GSAFDAVIQALKRGGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLF 661

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                 + +    +    L      K + D     +L       +++ T  P         
Sbjct: 662  GLDDDDLFRLAWRRKGSLRHALREKAAGDAKLATALQRLDACAERSQTDTPFGFYAWLLG 721

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                   ++  +                   N ++ ++ +L ++  Q         +   
Sbjct: 722  GVGGRARILRRLGP---------------EANDALDEFLELALSYEQKAAPSLQGFMA-- 764

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
            W       +        +    +  +  + ++     +   T  P   +   L  L    
Sbjct: 765  WLRAADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLVDTTSSPSDTQRLNLIRLPGGN 824

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
            ++  +   ++  G                 RV++       +E         +       
Sbjct: 825  AQPGSVGAMVWAGRKSND-----------PRVVEQARAEMVSETEDEYRRLLYVAMTRAA 873

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC--YLDWTRKLDYTTKQPH 753
              +        N   + +     L+  G  +    ++          + R  D  T+   
Sbjct: 874  DRLIVGGCMPGNRNEVRALSWYDLISKGLENSGLTMRTAPPDGAVKRYCRPEDEVTEIAP 933

Query: 754  YKRPKPFPP----LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
             ++    PP            +      L+       A    ++       +      RG
Sbjct: 934  SEQAPAAPPLVMPDWLHKAAPALRRPDNLLRPSDPDDADHR-RIRRGETEAQRQRALQRG 992

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            TL H ++  L     +      +  + +  D    +E       ++      + +  F  
Sbjct: 993  TLVHRLLQSLPDLPADIRANAADRFLLRNADDWSPQERDALAARVLEVISDDRFAAVF-- 1050

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKE 927
                  +   +  V I  ++      + ++G  DR+ +     V I DYKT   P     
Sbjct: 1051 ------APGSRAEVPIVGRLQRHGEPVLISGQIDRLVVT-DAEVLIVDYKTNHAPPRSLA 1103

Query: 928  TAQKLIDPQLSLEAAAL 944
                    QL+L  A L
Sbjct: 1104 ETPPAYVRQLALYRAVL 1120


>gi|189485138|ref|YP_001956079.1| hypothetical protein TGRD_135 [uncultured Termite group 1 bacterium
            phylotype Rs-D17]
 gi|170287097|dbj|BAG13618.1| conserved hypothetical protein [uncultured Termite group 1 bacterium
            phylotype Rs-D17]
          Length = 933

 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 101/695 (14%), Positives = 219/695 (31%), Gaps = 63/695 (9%)

Query: 346  ENKIPNIQKCFSD--VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
               +P+I+    +  + +  A +++ +   +   +    + +  K+A+I  D  + + V 
Sbjct: 245  GEPLPDIENKKDEYKLNIYSAFDDQSQGALLKNLISGYSENDLDKTAVIVPDSKMLQSVI 304

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL----NDFMAIATLVKHPLAKFGF 459
             E++      ++SAG P   T   S+L +++ A             +  ++ +PL K   
Sbjct: 305  SEISIVTDRYNVSAGYPAEKTPVFSLLNAIIEAQLSRKGEYYYSKDVMKVLTNPLVKNME 364

Query: 460  ---PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                      A   +E    + + N        +        Q  +              
Sbjct: 365  FLGESSISRTAVYKIEEALNQYSGNCLSGRMFVAFKEIIGEKQIIDEISLAVNEVWEYTA 424

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
             E        +         + T+        ++S         L+ +         +L 
Sbjct: 425  PEEI------MKMLKEIFDVFFTSWEKIETLNNLSYI---LSELLEKIYSLSVAANYSLN 475

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             E     LS          S  K    + ++   +LI  + +         L ILG LES
Sbjct: 476  AEATELLLSLAKELKFGEVSQAKFQNEDVLNTFKKLIKNKRIVLPGSPLKGLQILGLLES 535

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTR 695
            R L+F+ + + G+ +   P    +   + + +   L ++ A+K +    + F+    G +
Sbjct: 536  RNLSFENVFIVGMIDSAIPAVKKEYSLIPKDIMYALGIEIAKKELEIQQYHFDRLISGAK 595

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
            +L       + +     SR+++ L+     +  D    +   ++          K+ + K
Sbjct: 596  NLNLIYPDNDKD---ERSRFIESLIWNKQFENKDINIVKINKFVLPKFLAKQPAKRKYAK 652

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
              K       +  +Y+ S+I   ++     Y   +L LD      ++    D G   H+ 
Sbjct: 653  TKKIR--EYLKNMSYTHSKIDAYLSCKLKFYFMHVLILDERTKVGQEFSAVDIGNFVHSF 710

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKIS----HSFLEH 870
            + + + ++++    +     K+         +  PH        +  ++      + L +
Sbjct: 711  LKDTLCEKLDSKKLQTLEFEKEYFKKFENSFDNSPHFKFREDAFMIKEVLLYRMKNILHY 770

Query: 871  EEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--- 924
            E    S              I              DRID        I DYKTG  P   
Sbjct: 771  ERLR-SYKNIYGCEKKYYSNIKTASGETYKFNCRIDRIDTDGEN-YMIFDYKTGAAPGSI 828

Query: 925  -------------KKETAQKLI-DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
                          ++  +K +   QL L         F +     V       +K+   
Sbjct: 829  VSNKYFDLMSNNFDRQNIKKAVSSMQLPLY-----KNIFEKETDFAVLECGIYDIKKAEI 883

Query: 971  IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
            I             E+ +K +  +  ++  +  GE
Sbjct: 884  IKFPERK-------EIYDKCIDAVRSLLDEINTGE 911


>gi|326790760|ref|YP_004308581.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
 gi|326541524|gb|ADZ83383.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
          Length = 1131

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 115/955 (12%), Positives = 257/955 (26%), Gaps = 170/955 (17%)

Query: 71  KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
              +   + S   +  E F             + +++R++ L R+I   + ++    K++
Sbjct: 57  PGLLRAEVISFNTLAREVFKEVGKAEV---AVIEDLERMIILKRVIEAHKKEIIFYKKNM 113

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW-WLLAADFLK 189
                              + +   I ++E      E L  L   K     +      + 
Sbjct: 114 NNT-------------GFIEAINRFITVLEQAGVSKEQLGELIENKEATLLFKSKLTDIH 160

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
           +  + + + L     +  +   + L+ +      K  K  + I G  G       ++  +
Sbjct: 161 MLYEAFEDYLGNQFVT--IEKNMTLLASSIMKSKKLEKAWLWIDGFYGFTYNQLLIIKEL 218

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                G  +   +D                  T ++   +++P Y   ++L  L    E+
Sbjct: 219 MKKVKGLTITLPMDKSY---------------TRTDKVRNSYPFYESIQMLQKLMGICEE 263

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                 V+          + ++L            L+      +K    + L    +  E
Sbjct: 264 QHLAYEVNYVKGAGEKNEALAYL--------EGQYLKPYANPYEKENEAIYLQTYGSRAE 315

Query: 370 EAISIAIAL----RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
           E   +A  +              + ++    +    ++     + I   +     + T  
Sbjct: 316 EVEQVAKQIVTLVMEEGYRYHDMAVIVGDLADYKTLLEGAFKEYEIPYFLDMKRNIHTNS 375

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
             + L  +L  +     + +I  L++  +      E  L         +  +        
Sbjct: 376 LVAALEGVLEVLTSNYSYKSIMGLLRTQILPISIEEIDLLENYLLAYGIKGKKKWAQPWG 435

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
            D                       +  EE +    +  + IL  I  L         + 
Sbjct: 436 FD-----------------------QKDEEKQARINITREAILGPIQKLE-MTIQMTKSS 471

Query: 546 GNLSISDWTKLTVTCLQNVCL------------DEHRKLPNLWFEEEGKTLSSLFSKIIE 593
           G   + D TK     L+++               E  +L  +   +    +  +F ++++
Sbjct: 472 GKNKVVDLTKALYGFLEDIGAYSKLNEIIAKHKAEGNRLLEIENTQIWGKIMEVFERLVD 531

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                + + + +  I+        +         + I     +RL       + G NEGV
Sbjct: 532 ILGEEELSLMTYRRILETSFSYVKMGVIPPAQDQVLIGSVDRTRLPRLKACFILGTNEGV 591

Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKY---------------IGQAAHDFEMANGTRHLI 698
            PK     P  S + ++ L+    E                  G     + M       +
Sbjct: 592 IPKVDETTPIFSDMDKASLSQMCKEDKGPKGRLNELIIDQPLYGGQFSIYSMLTRATEKL 651

Query: 699 YTRSL--RENNIPTIASRWLQRLLVLGGT--------------DFFDNLKKRGQCYLDWT 742
           +  +    EN  P   S    +L  L G                        G    ++ 
Sbjct: 652 FVSAAMADENGKPLRTSLVYYKLKKLFGETPKPLQGDFLSQIYRPLPTFGYVGNLLREYV 711

Query: 743 R-KLDYTTKQPHYKRPKPFPPLEAQPRTY----------------------------SFS 773
             +L+    +            + + +                              S S
Sbjct: 712 EGRLEEEAWKDLVSWYATKDEWKDRLKGLTDYLFYTNQQHYLQEETTHLLYGNKLDTSIS 771

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
           +++         + R  +K +    F+   DR   GTLFH  + +  K+    NT     
Sbjct: 772 KLETFRQCACCYFMRYGIKAEERRLFR--FDRAKVGTLFHAALEQYPKELSLMNTTWTKA 829

Query: 834 LMKQI----------IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKI 881
             +++                +                K++   +            E +
Sbjct: 830 TREEMQQGVKKATAYAVEQVNEAQRETGRFQFTAAKVEKMTSRAIHALTAHLKNGEFEPM 889

Query: 882 FVNIPAK-------MAIESIGIH---LTGFADRIDL---LKSGFVD-ITDYKTGD 922
              I          + I    +    +TG  DR+D+     +     I DYK+G 
Sbjct: 890 GYEINFGEGKGFPPIEIAIDEVRTILVTGQIDRVDVYYKDDNQQYIKILDYKSGQ 944


>gi|251764594|sp|Q897P5|ADDB_CLOTE RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
          Length = 1150

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 117/952 (12%), Positives = 262/952 (27%), Gaps = 129/952 (13%)

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMW--WLLAADFLK 189
               L +  + AN       L+DII   +      E +   L+  +             + 
Sbjct: 103  TGELKIFNNAANKNGFVSTLSDIITEFKRYNLTPEMIKEYLEVAEEREDNILKGKLQDIY 162

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            +    + + + +            L     E         I +       P    ++  +
Sbjct: 163  LIYSKFQDSIRKK-FIDEEENLTILADKLKESKY-FDGAYIWVDEFFNFTPQEYLVLEEL 220

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                    +             + +        +                +   +IK E 
Sbjct: 221  LLKAEKVNITLCTGGLNEGERIDNLDLFLPVKNTEEKILE---------FVKRNNIKYEK 271

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
              +L       +  S  +S           +  +              D+ + +A NE  
Sbjct: 272  PIKLNCDPCYRFKNSKELSHMEKNLFAFPYKIHEKY----------TEDICVFQALNEYS 321

Query: 370  EAISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTL 425
            E    A  +   + +N    K  A+IT D    + +     T +GI   I   +      
Sbjct: 322  EIEYTARDIIKLVRDNGFRYKDIAVITGDLEGYQSLIKAVFTEYGIPYFIDKKVEGDNNP 381

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                + S L  + K  ++ ++   +K  L      E  +      +E   L         
Sbjct: 382  LVIFILSSLEVLNKNWNYESVFRYLKAGLVDIKREEIDI------IENYVLANGIRGKRW 435

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
            ++ K      +            +    ++  E+   + + +++    +    T K    
Sbjct: 436  IEEKDWDYKILYGFNLTEEKEEEEEEKLKKINEIRRKITEPLIEFHNNIKGEITPKKMCL 495

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIKANAI 603
               +  +   ++      +   + R   +    +++       L  +++E     K N+ 
Sbjct: 496  ELYNFLEKMNISSKIESWIKYFKERNRLDKINEYKQIWDVAIGLMEQLVEVMKEEKLNSR 555

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
               +I     +   +         + +  T   R      L + G N+GV+P    +N  
Sbjct: 556  TLENIFKSGFEQYELGIIPPSLDQVLVSSTKRLRSHEIKALYIVGTNDGVFPSVLDENGI 615

Query: 664  LSRVMQ---SDLNLKTAEKY----IGQAAHDFEMANGTRH-LIYTRS-LRENNIPTIASR 714
            LS + +    +  L+ A+        +    +         L  +     E       S 
Sbjct: 616  LSDLERENLRETGLEVAKDTKSTAFEEQFLMYVTLTTMSDYLRISYPIANEEGKTLRPSI 675

Query: 715  WLQRLL--------------VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
             + RL                 G  +   + K     ++   R  +   +          
Sbjct: 676  VISRLRKIFPNLCEKSNVIKEEGDIEKISSPKPTFNEFISQLRVKEEGLELSSIWLSVYD 735

Query: 761  PPLEAQPRT---------------------------------YSFSEIKQLINDPYAVYA 787
              +  +                                     S S +++    P+A + 
Sbjct: 736  WFMNNKEWKEKFINISQGFNHTNYAEIVDTRRVRKLYGSKLNMSVSRLEKFSQCPFAYFI 795

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN--TPEINHLMKQ-----IID 840
            R  +               D GTL H+++    +    KN    EI+  + +     ++D
Sbjct: 796  RYGMNAKERK--IYKVSTPDIGTLMHDVVESFSRHIEGKNISWEEIDRELCESFVSTMVD 853

Query: 841  SHFEK-----ENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA------ 887
               +       N  P    +  +    I    +E   ++  +   +     +        
Sbjct: 854  EKIKDMKGSILNSSPRYKHMT-NRIKDILSKSMEVISQQISRGDFKPSAYELAFGFNGDF 912

Query: 888  ---KMAIESIG-IHLTGFADRIDLL--KSGF-VDITDYKTGDNP-KKETAQKLIDPQLSL 939
                + + S   ++L G  DR+D L  + G  + I DYK+G            +  QL +
Sbjct: 913  PPISIELSSGEKVNLIGRIDRVDKLENEDGTFIRIIDYKSGKQDFNLSDIYYGLQIQLLV 972

Query: 940  EA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
               A L+    S       A + Y  +      D + + KK+ + +E  ++ 
Sbjct: 973  YLDALLQEIEDSAKKEVNPAGILYFNMD-----DPLISTKKEITKEEAEKEI 1019


>gi|227486916|ref|ZP_03917232.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092990|gb|EEI28302.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 1025

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 121/1074 (11%), Positives = 293/1074 (27%), Gaps = 168/1074 (15%)

Query: 24   ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF-IEITGKKS---TILPIIK 79
            A +   + +  R   L       + I   +KR+          ++   +S      P + 
Sbjct: 45   AGVTSLIRDAARARLLAGTDPDRLLIVTHSKRSALAFEEALWDDLVASRSDEENAAPYVA 104

Query: 80   ------SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE 133
                  S+  +         + +    P      RL+  A    + R  L    +     
Sbjct: 105  ESKLAQSVHSLAFSIVHYAAIANNVPAP------RLMTGAEQDAVIRELLKGNQEAGGEY 158

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193
             P    +   + +  A+ L D +       K   D+  L  ++    W+ A  FL+  + 
Sbjct: 159  WPAER-VEALDYVGFARGLRDFLLRAGERGKSAADVKKLGEQENKPLWVAAGAFLEEYTA 217

Query: 194  YWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMST 248
                 L +++  +     I  +RA  ++       +     + +  +    P + +L+  
Sbjct: 218  VMN--LQQMHHLNASELLITAVRALEDNPALLEKMRNRYDFLAVDNAQHLDPLSQKLVEM 275

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +  H    I + G + +     +           S  T                      
Sbjct: 276  IGEHTP--IFVVGGNTNGLVYSFRGANTDLVEDKSGKTVI-------------------- 313

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                              + +SF  P    +  T    +    I +   +V LI      
Sbjct: 314  -----------------TLEQSFRRPSDKRIIYTHTAGDNFSVIARELREVHLI------ 350

Query: 369  EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHS 427
                          D   +   +IT   +    ++  L    + +   S  + L      
Sbjct: 351  -------------RDIPWEDMVVITRSLSQIPALQRALATADVPVHIDSTDVVLVEQSIV 397

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
              +   ++ +        I  L   P+         L R +                   
Sbjct: 398  QAMLQAVDIVMGNGTEEDIIELATGPIGG--ADPITLRRIQRE----------------- 438

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                 +  +             +RL E+ + +   L   I      +    + +      
Sbjct: 439  -----IGELGPVVRGAAGVAEDARLGEQAESVLTHLSAVIQTGREAVERGDSLELILWSI 493

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
               +  +   +           +   +L    E   ++  + + ++       +   +I+
Sbjct: 494  WEATGLSTSKMYTALRGGPAAAQANRDLNAMMELFDVAGDYVERVKQP-----SLEGFIE 548

Query: 608  IITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             +T       V+ +   +   + +L    +    ++T+IL G ++  WP          +
Sbjct: 549  HLTSQDLPTGVRERQVVAPKAVALLTAHGAIDDEWNTVILAGADDDSWPSLGLTGTIFDQ 608

Query: 667  VMQSDLNLK----------TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT---IAS 713
                DL  +            E+   +      + +     +   ++      +     S
Sbjct: 609  EELVDLIDENVDPDAYIDRLRERLHEEQRLFSLVTSRATDTLVITAINPAEEDSPLPQPS 668

Query: 714  RWLQRLLV----------LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
            R++++L                    + +             D + ++            
Sbjct: 669  RFVRKLEEDETFSVSTVVETDELAVKSSRPFIAELRRALTSADSSDEEKEEAADLLAMLA 728

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH-------------------FKKDPD 804
            +A       +    L     A   R   +   +                       +   
Sbjct: 729  DAGFSEAEPTNWWGLAGPTDAQPLREPGQPATLSPSQVESGLQCPLKMVLNSVTPTESSS 788

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
                G L H +    +  + ++ T +    +  ++D++     +PP  +      F ++ 
Sbjct: 789  ALREGNLLHALAEASVTLQQDEETWKEAEQL--VLDAYLSSRTVPPWKEKADEEEFVEVM 846

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGIHLTGFADRIDLLKSGFVDITDYKT 920
            ++ +     +   +  + V IP  + +    +   I + G  DR+     G + + D KT
Sbjct: 847  NATVSKMTNLAGDL--VGVEIPMDVTVGQLDDGSPIRIKGRLDRVHRDSEGRMKVYDLKT 904

Query: 921  GD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR-LKQKFKIDCITNDK 978
            G   P  + A+    PQ+++    +      +     V +      L+            
Sbjct: 905  GRSAPTYQEAESH--PQMAVYQLGINHSRIQENPLEFVTDDGSGGALQSGGAELVYPRST 962

Query: 979  KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
            KK S   L+E + + L++ +  L +          L  K      Y  +  + E
Sbjct: 963  KKPSQKPLTEDNARILMDNLRQLVHHTSGST-VPALPNKHCGSCAYRIICPITE 1015


>gi|197124366|ref|YP_002136317.1| hypothetical protein AnaeK_3983 [Anaeromyxobacter sp. K]
 gi|196174215|gb|ACG75188.1| conserved hypothetical protein [Anaeromyxobacter sp. K]
          Length = 1100

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 146/1050 (13%), Positives = 297/1050 (28%), Gaps = 140/1050 (13%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L S TI VP++R    LR E       ++ +L   + LG       TA + +       
Sbjct: 24   PLPSRTILVPSERHAHALRRELARS--GRAGVLAGTRFLG-----PLTAAIEVLQAAGVA 76

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
             +  +  L  ARL+ ++   LP    DL                   +  A  I  +E  
Sbjct: 77   FTPGEGALRPARLLALFHEDLPLEHFDLDL---------LRTTRGWDEAFASAIGELEAA 127

Query: 163  EKKWEDLHA--LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 DL A           W    +     + + + R+    A+       A       
Sbjct: 128  GLGPRDLPAEPAAARDLARLWSRVEESAG--TSFSSARIFREAAALLARDPGAWPFLGPT 185

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +       + AG   +IPA    + T    P G   L  +  H    + + +  + + 
Sbjct: 186  LALATGHEDAVHAGFLQAIPAVRLAVQTA--RPMGERHLERVARHFGADVRSALAARGST 243

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
             +S                       +   +               +  ++L  D + + 
Sbjct: 244  GSSRAEEAQD-------------RAAQAPARGSTGSRGAEKPTERDLLATYLLADAAVLA 290

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLAR 400
            +     +  P+      + A +E + E   A+ +A  +  +    ++ + L+ A   LA 
Sbjct: 291  DPARPRSGGPDGTVDLEEHAGVEGELEAT-ALWVARQVLEARRPLEEIAVLVPAQDPLAG 349

Query: 401  RVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
             V   L R  +      + ++ G+P  +T   + + ++L A+        +A ++   L 
Sbjct: 350  LVADRLARLPLDGGPLPVFVAGGLPAISTAAGARILAVLRALRSHLSAETLAPVL-PALR 408

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
              G  +   +   +   +    G           +  L                      
Sbjct: 409  LDGIADGERTHLTHGEAMELAFGLGIVGGNPAHPAGALAWSERAAARAGELTAALAQVHV 468

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            D + A      + + +  L   +   ++  G                 +     R L   
Sbjct: 469  DDDSAERERWRLERTLKSLRAIRPALDALVGVARKLVDGAPLAAIADVLGGFLARWLLAP 528

Query: 576  WFEEEGKTLSSLFSKIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                               G+     +  + + +I   + G  V         +++    
Sbjct: 529  GEGAALAARLGEALAPACAGNLGKALSGDDALQVIEDHLLGLRVAHGRFGEPAVYVGTVA 588

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---- 690
             +  L F  + + GL EGV P    ++P +  V++  L     ++ + +A          
Sbjct: 589  GAAGLGFGAVRVIGLCEGVLPSQPREDPVVPGVLREQLERAAPDRVVPRAEDRVAAQVHA 648

Query: 691  ------------ANGTRHLIYTRSLRENNI------------------------------ 708
                        A     +   R+ RE                                 
Sbjct: 649  LVAAVRGARDAVALSAPRVDLARTEREPGAIFIDAAAALARPHAGTGEPAEAVPDGAALR 708

Query: 709  ------------------PTIASRWLQRLLVLGGTDFFDNL------KKRGQCYLDWTRK 744
                              P   + WL R+         +          R       T  
Sbjct: 709  RDAFRPAASAAARFRDAHPISDASWLDRVARTAPELPPEWTGAPVVDLARLASLRAPTGP 768

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI--PHFKKD 802
            L  +        P P  P  A  R  S S + QL+  P     RRIL  D        ++
Sbjct: 769  LGPSDGVFEIGGPFPPVPGIAPERPISASALGQLLQCPRLFLMRRILGWDEPAGAPSLRE 828

Query: 803  PDRTDRGTLFHNIITELIKKR------INKNTPEINHLMKQIIDSHFEKENLP-----PH 851
             D    G+L H ++    ++             +     + + D  F+            
Sbjct: 829  LDPLSFGSLLHRVVELFYREHGAAFSRREGTIGKWQTRARAVADRAFDGLLSEVPLVGEG 888

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-------KMAIESIGIHLTGFADR 904
            +    R   H     FL ++ +  +    + V +P         +  +   +H+ G+ DR
Sbjct: 889  VRQKERERLHDALREFLAYDWE-GAPRRFVGVELPFGTPEAPLSVDADGETLHVHGYIDR 947

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQKL----IDPQLSLEAAALKAGSFSQIDCRKVANL 960
            +D+ + G   + D K+G    +   +       D QL L   A +  + +     KV   
Sbjct: 948  VDV-EGGVTLVRDLKSGKAHPRAGKEAGPTPLRDVQLGLYQLAARKLATAWKTPAKVQGA 1006

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             Y     + +++         + ++ + + 
Sbjct: 1007 -YAYASGRGEVEERAFRADAGALEQATAEW 1035


>gi|28210410|ref|NP_781354.1| ATP-dependent nuclease subunit B [Clostridium tetani E88]
 gi|28202847|gb|AAO35291.1| ATP-dependent nuclease subunit B [Clostridium tetani E88]
          Length = 1157

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 117/952 (12%), Positives = 262/952 (27%), Gaps = 129/952 (13%)

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMW--WLLAADFLK 189
               L +  + AN       L+DII   +      E +   L+  +             + 
Sbjct: 110  TGELKIFNNAANKNGFVSTLSDIITEFKRYNLTPEMIKEYLEVAEEREDNILKGKLQDIY 169

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            +    + + + +            L     E         I +       P    ++  +
Sbjct: 170  LIYSKFQDSIRKK-FIDEEENLTILADKLKESKY-FDGAYIWVDEFFNFTPQEYLVLEEL 227

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                    +             + +        +                +   +IK E 
Sbjct: 228  LLKAEKVNITLCTGGLNEGERIDNLDLFLPVKNTEEKILE---------FVKRNNIKYEK 278

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
              +L       +  S  +S           +  +              D+ + +A NE  
Sbjct: 279  PIKLNCDPCYRFKNSKELSHMEKNLFAFPYKIHEKY----------TEDICVFQALNEYS 328

Query: 370  EAISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTL 425
            E    A  +   + +N    K  A+IT D    + +     T +GI   I   +      
Sbjct: 329  EIEYTARDIIKLVRDNGFRYKDIAVITGDLEGYQSLIKAVFTEYGIPYFIDKKVEGDNNP 388

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                + S L  + K  ++ ++   +K  L      E  +      +E   L         
Sbjct: 389  LVIFILSSLEVLNKNWNYESVFRYLKAGLVDIKREEIDI------IENYVLANGIRGKRW 442

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
            ++ K      +            +    ++  E+   + + +++    +    T K    
Sbjct: 443  IEEKDWDYKILYGFNLTEEKEEEEEEKLKKINEIRRKITEPLIEFHNNIKGEITPKKMCL 502

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIKANAI 603
               +  +   ++      +   + R   +    +++       L  +++E     K N+ 
Sbjct: 503  ELYNFLEKMNISSKIESWIKYFKERNRLDKINEYKQIWDVAIGLMEQLVEVMKEEKLNSR 562

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
               +I     +   +         + +  T   R      L + G N+GV+P    +N  
Sbjct: 563  TLENIFKSGFEQYELGIIPPSLDQVLVSSTKRLRSHEIKALYIVGTNDGVFPSVLDENGI 622

Query: 664  LSRVMQ---SDLNLKTAEKY----IGQAAHDFEMANGTRH-LIYTRS-LRENNIPTIASR 714
            LS + +    +  L+ A+        +    +         L  +     E       S 
Sbjct: 623  LSDLERENLRETGLEVAKDTKSTAFEEQFLMYVTLTTMSDYLRISYPIANEEGKTLRPSI 682

Query: 715  WLQRLL--------------VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
             + RL                 G  +   + K     ++   R  +   +          
Sbjct: 683  VISRLRKIFPNLCEKSNVIKEEGDIEKISSPKPTFNEFISQLRVKEEGLELSSIWLSVYD 742

Query: 761  PPLEAQPRT---------------------------------YSFSEIKQLINDPYAVYA 787
              +  +                                     S S +++    P+A + 
Sbjct: 743  WFMNNKEWKEKFINISQGFNHTNYAEIVDTRRVRKLYGSKLNMSVSRLEKFSQCPFAYFI 802

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN--TPEINHLMKQ-----IID 840
            R  +               D GTL H+++    +    KN    EI+  + +     ++D
Sbjct: 803  RYGMNAKERK--IYKVSTPDIGTLMHDVVESFSRHIEGKNISWEEIDRELCESFVSTMVD 860

Query: 841  SHFEK-----ENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA------ 887
               +       N  P    +  +    I    +E   ++  +   +     +        
Sbjct: 861  EKIKDMKGSILNSSPRYKHMT-NRIKDILSKSMEVISQQISRGDFKPSAYELAFGFNGDF 919

Query: 888  ---KMAIESIG-IHLTGFADRIDLL--KSGF-VDITDYKTGDNP-KKETAQKLIDPQLSL 939
                + + S   ++L G  DR+D L  + G  + I DYK+G            +  QL +
Sbjct: 920  PPISIELSSGEKVNLIGRIDRVDKLENEDGTFIRIIDYKSGKQDFNLSDIYYGLQIQLLV 979

Query: 940  EA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
               A L+    S       A + Y  +      D + + KK+ + +E  ++ 
Sbjct: 980  YLDALLQEIEDSAKKEVNPAGILYFNMD-----DPLISTKKEITKEEAEKEI 1026


>gi|168334043|ref|ZP_02692262.1| ATP-dependent nuclease subunit B [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 1100

 Score =  131 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 116/904 (12%), Positives = 256/904 (28%), Gaps = 147/904 (16%)

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
           P +  ++R++ L +++    ++L         +  L                  ++   E
Sbjct: 76  PILDELERIMILKKVLEDHHHELTFFTTSYNKDGFLEKINI-------------LLTNCE 122

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                      L ++            ++  SK++ + +     ++      AL+++   
Sbjct: 123 NFGV-----TQLGDDTVEGTLKAKLADIQKISKWFYDFISTQFLTNEG-SLNALIKSLTT 176

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT-EKST 279
                    III G      A  +++  + +     IV   +D     +  N +  +   
Sbjct: 177 T-EAYKDALIIIDGFYSFTAAQQKVLLKLHSMARQMIVTLPMDKEYLGSNQNHLYYKSYN 235

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            + +         Q++ A                             I+ ++    +   
Sbjct: 236 TLINFEFAVPVSKQFTNAAF------------------ANKTADIQFIADNYFATHSIKQ 277

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADR 396
                         +  ++V L    N   E   +A  +   + +      + A+IT + 
Sbjct: 278 -------------PRDSANVRLFACRNFESEIELVAQNITRFVRDDTYRYNEIAIITGNL 324

Query: 397 NLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-L 454
           NL R  +   L ++ I   +     +      + + +LL  I +  +  AI + +K   L
Sbjct: 325 NLYRSHLTTVLGQYDIPYFLDETKTIQANPAVNFILNLLEVITQHWNLTAILSFLKSGIL 384

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
             F   +            +  +         +  S +++ + T+  +  +   Q  ++ 
Sbjct: 385 TDFADEDIDYLENYLYEHGINYKNKWLEXWEEETDSTLINDLRTRVASIILGIEQKIIAH 444

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           + +   +   +        LV           + S S+                      
Sbjct: 445 KHRGKILT-SNLCRILYDFLVEINFANTIRWESKSESEIEHTLSK----------NFNLA 493

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           L ++   +T+  +  ++++       N   +  I+T     E V         + +    
Sbjct: 494 LEYKHIYQTILDILDRLVDILGNQYVNIATFKSILTTCFKHEKVGTIPATQDQILVGEIP 553

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD---------LNLKTAEKYIGQAA 685
            +RL     + L GLNEGV+P N   +   S +  +            L       G   
Sbjct: 554 RTRLPKQKIVFLIGLNEGVFPANPINDSLFSDMDLTANLFNANPNLYELFIYSNLYGSEL 613

Query: 686 HDFEMANG-TRHLIYTRSLRENNIP-TIASRWLQRLLVL--------GGTDFFDNLKKRG 735
             +      +R+L  + S+ +++   T  S    RL  +          T F D +    
Sbjct: 614 EIYSTLIKPSRYLFASYSMGDDSGKITRPSIIFTRLKRMFTMYAPSTTATTFADQIYTSK 673

Query: 736 QCYLDWTRKLDYTTKQPHY----------------------------------KRPKPFP 761
           Q  +   R +                                            +     
Sbjct: 674 QAIIALGRAIKQNAGIATLDDSYKYALMWYMQHQPDAIVQTVNGLFFTNQQDKLQTDIAK 733

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
            L +  +  + S I++    P A +    L       FK      D GT+FH+++    K
Sbjct: 734 KLYSNNQVTTVSRIEKFRRCPCAYFIEYGLLASERKLFKFRTP--DIGTIFHSVLEIYPK 791

Query: 822 KRINKN------TPEINHLMKQII--DSHFE--KENLPPHIDIIWRHLFHKISHSFLEHE 871
                       TP+    +      +S  +  K  +              +S+  +   
Sbjct: 792 LLQAAGSTWTTITPDAQQQLVATAVSESMLQNNKLKIKNGHTKYLTKRIETMSNRAITAM 851

Query: 872 EKIQ--SSIEKIFVNIPA--------KMAIESIGIHLTGFADRID--LLKSGFVD--ITD 917
                                     ++ +    + LTG  DR+D  L   G     I D
Sbjct: 852 ASQLKCGKFVPAEYEYKFNDAALPAIEIDLGETTLRLTGTIDRVDAYLTPDGDTYIKIID 911

Query: 918 YKTG 921
           YK+G
Sbjct: 912 YKSG 915


>gi|56461632|ref|YP_156913.1| exonuclease V gamma subunit [Idiomarina loihiensis L2TR]
 gi|56180642|gb|AAV83364.1| Exonuclease V gamma subunit [Idiomarina loihiensis L2TR]
          Length = 1155

 Score =  131 bits (328), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 81/781 (10%), Positives = 200/781 (25%), Gaps = 91/781 (11%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           L + T V            L   T+ V +    Q L+    + +G  +     +  +   
Sbjct: 16  LEDLTDVAVTFTQNYPLAPLEQETVLVQSNGIAQWLKINLAQASGIAA-----MIDVTLP 70

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              ++ A   +  +  P  S   +     RL+ +    +         +   S       
Sbjct: 71  ARFQWKAYRAVLGDDIPKTSPFDKDRLTWRLMRLLPELIEHNPHFAPLKHYTSDDSDGRK 130

Query: 145 AIWLAKNLADIIDIIETEEKKW--------EDLHALKNEKYGMWWLLAADFLKIASKYWT 196
              L+  LAD+ D        W        + L   +  +    W           + W 
Sbjct: 131 LYQLSGRLADLFDQYAVYRADWLDNWVRGQDMLEQEQPVEDEQLWQP---------ELWR 181

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMSTVA 250
               ++        +  L +   +     T+ P      +++ G +       +++  + 
Sbjct: 182 AVSNDIGIDDYWNNRAELHQRFIDTAQALTERPAGLPPRVVVFGISSLPQQMLQVLDAIK 241

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTN----------ITSSNTTYSTHPQYSLAKLL 300
            +    + +     +    I +                      +             LL
Sbjct: 242 GYTQILLCVHNPSQYHWADIVDGKEALRQAVKASSRLKHKPELPDDPNDDELHQLAHPLL 301

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNTDIL 345
                +  D  RL ++ +E   +    +                + L  D  ++R     
Sbjct: 302 ASWGKQGRDYIRLLDLYDETLAKQEAFNTIKLELFEPHNTDHLLAQLQDDILNLRPVQET 361

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARR 401
               P        +      + + E   +   L  +     +   +   ++  D N    
Sbjct: 362 RELWPTPNTADKSLQFHVCHSPQRELEVLHDQLLDAFAKDPELKPRDVMVMLPDVNTYAP 421

Query: 402 VKLEL-----------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
               +               I   I+             L  LL           +  L+
Sbjct: 422 YIDAVFGRYHNRFGERDPRAIPYTIADQGERHQRPLMIALELLLQVDQLRFTQTDLFNLL 481

Query: 451 KHPLAKFGFP-----------------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
             P  +  F                   ++   A+   +       + +     LK ++ 
Sbjct: 482 SVPAVQQRFDMSDDDLPQLKRWVKEAGARWGLNAEQRAQFYMPAAEETNSWWFGLKRMIA 541

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISD 552
                   + ++ +     + E       L   ++ C+   + T +       G  S+ +
Sbjct: 542 GYAMGDLADVNLENDSPWANVEPYTEVAGLSAALVGCLADVVRTLEQWWQRAQGEHSLPE 601

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
           W       L+     E      L   +    L  L    +E  +  +     + D     
Sbjct: 602 WVTQGEWLLEQFFEAEEDSDRLL-LAKLSDELYQLRDICVEADNESQLRLPIFKDAWLER 660

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           +D + +  +    + +     +  R + F  + + G+NE  +P++T +  F     +   
Sbjct: 661 VDQQNLNQRFLAGA-VNFATLMPMRAIPFKYVCVLGMNESDYPRSTPRVDFDLMTDRYRP 719

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDN 730
             ++             M +       +       +N     S  + +L       +  +
Sbjct: 720 GDRSRRDDDRYL-FLEAMLSARDCFYLSWVGYSAKDNSERTPSVLVAQLRDHLQQGWEVD 778

Query: 731 L 731
           +
Sbjct: 779 I 779


>gi|118602243|ref|YP_903458.1| hypothetical protein Rmag_0199 [Candidatus Ruthia magnifica str. Cm
            (Calyptogena magnifica)]
 gi|118567182|gb|ABL01987.1| hypothetical protein Rmag_0199 [Candidatus Ruthia magnifica str. Cm
            (Calyptogena magnifica)]
          Length = 824

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 64/432 (14%), Positives = 145/432 (33%), Gaps = 43/432 (9%)

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            +  + +  +    + + IL  LE+R L FD   + G+     P       F++  +    
Sbjct: 420  LTAQVIFQEQANKTNIQILDALEARGLYFDEAWILGMTNQFLPTRLNSTRFIAHDISVTH 479

Query: 673  NLKTAEKYIG--QAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             +   +  +    A +  E  N     ++++ +L       + S  L        T    
Sbjct: 480  QIPNTDYKLITTDAKNTLESLNSLANKVVFSYALTHLGNEQLPSP-LVEFNPTINTSHIQ 538

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
             +       +     LD  T      +                  +K  +   +  +A  
Sbjct: 539  KIFP-----IPLESILDTNTSYLKKPQ-----------IKLGVRILKDQMACAFKGFA-H 581

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIK------KRINKNTPEINHLMKQIIDSHF 843
             L            +R ++G + HN++  + +      + +  NT E+++L+   I++  
Sbjct: 582  RLDTTSFDAPHIGINRLEQGNIIHNVLQYIYQKITSKEQLLALNTKELDNLILNKINTVL 641

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
            ++  L      I +     + H+F+E ++        +         I ++        D
Sbjct: 642  KRH-LNSSFKKIEKLRLSHLIHTFIEADKLR-EDFYVLTTEQNITANIANLEFE--TRLD 697

Query: 904  RIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAA--LKAGSFSQIDCRKVANL 960
            R+D + +G   I DYKT            + +PQL + A    ++  +F ++   K+   
Sbjct: 698  RLDRMSNGDKIIFDYKTSTTSISSWYGSAISEPQLPIYAITNNVQGAAFIELASNKIN-- 755

Query: 961  FYIRLKQKFKIDCITN--DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018
             +  L +        +    K    ++  +   + L       QNG       +  ++ +
Sbjct: 756  -FKGLSKNPDSLPKQSKYKDKYQDWNKQLKIWQQTLNIASIDFQNGIT----TVLPNKNA 810

Query: 1019 NIQSEYDHLARV 1030
                E+D L R+
Sbjct: 811  CNFCEFDLLCRI 822


>gi|121607641|ref|YP_995448.1| hypothetical protein Veis_0647 [Verminephrobacter eiseniae EF01-2]
 gi|121552281|gb|ABM56430.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2]
          Length = 940

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 79/600 (13%), Positives = 152/600 (25%), Gaps = 65/600 (10%)

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
               ++        +   D          +    +AL    +  +EA   A  +   L  
Sbjct: 178 AQALQADWGAAALTLAWPDAPAPAGSMAGQMPGHIALHPTRDAEDEAQRAAACVLRHLAA 237

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
            +   AL   DR L RR+   L+   + +    G  LSTT  ++ L + L A        
Sbjct: 238 GRAPVALAANDRALTRRIAAHLSSSAVAVRDENGWTLSTTRAAAQLMAALEACAWNASAD 297

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
           A+   +K                 +ALE    +     +     +               
Sbjct: 298 AVLDWLK-------QAPAIDPAVLDALERALRKAGVAHWPDAAARDWSASPAGPALTAGV 350

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                 R            +  +   +     +   +  + G+  ++     T    +  
Sbjct: 351 ALVQGWRAGLHAPRPLAQWLQALRALLLAAGQWPRLEQDSAGSAVLAALRLQTDRQAELD 410

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                                         G+  +    E+    + +++    KP    
Sbjct: 411 GW---------------------------HGAGRRMALAEFSRWASEVLEAARYKPPGMD 443

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           ++ + +L   +     F  L+L G +E   P         +   +    L + +      
Sbjct: 444 AAPVVVLPLPQLLARPFAALVLPGCDEKRLPPAPDPAGQWTPAQRQAWGLPSRQTLESAQ 503

Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
              +  A  T  +       +     + +  L   L L G        +  +        
Sbjct: 504 RAAWHNALQTPAVDLLWRTGDEGGEPLLASALVLALQLDGLAHQGADPRCQRRVAA---- 559

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                      RP P        +  S +    L + PY  +A R L L        D D
Sbjct: 560 -------APTARPSP-QGQALPLQRLSATAYADLRHCPYRFFALRQLGLQEADELAADID 611

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINH-------LMKQIIDSHFEKENLPPHIDIIWR 857
           + D G   H ++    +   +   P+            + +       E         W 
Sbjct: 612 KRDFGNWLHAVLQHFHEALRDDPAPDDATRSARMDSAAQAVTRQQGRDEGDFLPFTAGWP 671

Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI---------HLTGFADRIDLL 908
            L         +HE   Q+              ++              L G  DRID L
Sbjct: 672 PLRDGYLRWLAQHE---QAGARFRQAEWHTSQPLDPDPFDPSGTLDMVQLVGTIDRIDTL 728


>gi|167751207|ref|ZP_02423334.1| hypothetical protein EUBSIR_02193 [Eubacterium siraeum DSM 15702]
 gi|167655714|gb|EDR99843.1| hypothetical protein EUBSIR_02193 [Eubacterium siraeum DSM 15702]
          Length = 1132

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 98/872 (11%), Positives = 225/872 (25%), Gaps = 157/872 (18%)

Query: 157 DIIETEEKKWEDLHALKN-------EKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
           + ++      ++L    +       E+  +        +      + ++L E  A     
Sbjct: 119 NELKAAGISADELTNTLHSPEKNTAERLPVHLAEKMGDIAAVYSVYDKKLTEKYA-DRQD 177

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
                 +             I I G      A    +  +A+     +V    D +    
Sbjct: 178 NLTLAAQVIRNGDSFDENTTIYIDGFDSFSGAQQNFLRALADKGVNFVVALCTDENKAE- 236

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
                                                    +     + E    + +  K
Sbjct: 237 --------------------------------VFATCDRTERLFERGNREDIKYTRLCGK 264

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--- 386
           +    + +     D L+  + + +     + +  + +   EA  +   +R  +       
Sbjct: 265 APRYKNGNLKALRDFLQTGVKDSKADSDGITMAYSSSVSGEADFVCANIRKLVRSEGYRY 324

Query: 387 KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
              A+I A        V     R+ + +     +P+S         +LL A         
Sbjct: 325 SDIAVICASPAKYKDAVNSAAARYDVPVFADLPVPISEKPMLRFFEALLKAADNP-TGTN 383

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           I   ++    +               E    +    +     L    L     +  +   
Sbjct: 384 ILRYIRSGFVRLPS------------EKNNGKTVPMTLKERHLVEQHLMEEYAECWDLKR 431

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
             W   +          + +  +  +TPLV +  +     G   +  +T      +    
Sbjct: 432 KKWDKPMPHITNASEQRVEEIRIATVTPLVEFAKSVRGIGGRELVKKFTAFLFDKVDISA 491

Query: 566 LDEHRKLPN------------LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
             + +   N              + +  +T+S + + + ET         E+  +I    
Sbjct: 492 AIQGKCQDNSTRQLRYVKELTEEYNQLWRTVSEMLTSLYETLDDTPLTLAEFSALIHSCA 551

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK-NTAKNPFLSRVMQSDL 672
              ++        ++       +R      + + G  +G +P      N   +      L
Sbjct: 552 SRISISRTPNVLDSVLFGDPARTRSREVKAVFVMGAADGAFPDIYPEGNSVFTSDDVQRL 611

Query: 673 NLKTAEKYIGQAAH-------DFEMANGTRHLIYTRSLRENNI----PTIASRWLQRLLV 721
                E    +A +          M      L  T +  + N       IA R+   L+ 
Sbjct: 612 AENDIELENDEARYSSAVLDAYKAMTLAGEKLFITFTGEKENASEYIADIAKRFGAELIN 671

Query: 722 LGGTDFFDNLKKRGQCYLDWT---------------RKLDYTTKQP-------------- 752
           +   D     +        +                  L    K+P              
Sbjct: 672 VDNLDALYMTESVKSAEKQYVINSAQLTDGQKKAVEAVLSENEKEPSSIDRIKAVMSNNS 731

Query: 753 ---HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                 R     P+       S + I++L    +A + R  + L          + ++ G
Sbjct: 732 GNSDIHRISDIAPIVFPQTALSPTAIEKLNGCKFAYFLRYGMNLSSSAGI--AMNASNYG 789

Query: 810 TLFHNIITELIK-----KRINKNTPEINHLMKQIIDSHFEK---------ENLPPHIDII 855
            + H I+    +      R N N    +  +K +I+    +         EN+    + +
Sbjct: 790 NIMHYIMKYCFENMYDGARENGNPHVSDGRIKDLIEQALAEYREKYLLTEENMSARFNTL 849

Query: 856 W--RHLFHKISHSFLEHEEKIQSSIEKIFVNI----------------PAKMAIES---I 894
           +    +       ++  E + +S     +  +                   + +      
Sbjct: 850 YNALSVTAFYLIKYMAQELE-KSRFVPSYFELKLESGKSENGFDISPYSFDIELADKSRQ 908

Query: 895 GIHLTGFADRIDL--LKS---GFVDITDYKTG 921
            I + G  DR+D+        G + + DYKTG
Sbjct: 909 TITVGGTVDRVDIAYDDDKSGGQIRVIDYKTG 940


>gi|330469984|ref|YP_004407727.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
 gi|328812955|gb|AEB47127.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
          Length = 1114

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 117/1022 (11%), Positives = 238/1022 (23%), Gaps = 130/1022 (12%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITG----------KKSTILPIIKSLGDVVEEKFTADLLL 95
             V     T++A  EL                   +     P+           +   ++ 
Sbjct: 83   QVLGLTFTRKAAGELGHRVRTRLDQLIRRLGRRGRDPLDDPLAGEPTVATYHSYAGRIVT 142

Query: 96   SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155
             + L        RLL  A       + +         E            + LA  L + 
Sbjct: 143  EHGLRAGYEPSTRLLTEASRWQ-LVDLIVRNYDGDMSEVDRMPSTVTDAVLALAGELDEH 201

Query: 156  I----DIIETEEKKWEDLH------ALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
            +    D+     + + D+            K           L +  + +  R  +  A 
Sbjct: 202  LVEPDDLAAWTGRFFADVQSRPGRIYADVRKALALQQTRLKLLPLV-RAYARRKDDFEAM 260

Query: 206  SPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                      R   +H     + +     +++     +  A   L+  +    +G  V  
Sbjct: 261  DFADQLARAARVARDHPGVGEIERDRYRVVLLDEYQDTSHAQVVLLRALFG--DGHPVTA 318

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              D       W   +  + +   +    S      +  L      + E +     ++  +
Sbjct: 319  VGDPCQSIYGWRGASAGTLDRFPTEFVGSDGSPARVLGLTTSWRNRPEILAVANALATPL 378

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
                  + +        +                    V         +EA  IA +L  
Sbjct: 379  RAAGARVPELHAALSVDEPIAHRSPRG------AAAGTVHCALLSTYADEADWIADSLLA 432

Query: 381  SLDENKKK---------------SALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            +     +                +A++   R+    +   L   G+ +++     L  T 
Sbjct: 433  AWQGAARMPRALPEQIPVTARPTTAVLVRLRSQIPAIAAALRERGLPVEVVGLGGLLDTP 492

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                +   L  +    D  A+  L+     + G  +      +      A R   +  D 
Sbjct: 493  EVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRAKAIAAARRQLADDGDP 552

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              +   +    AT              S E           +      L     +     
Sbjct: 553  EIVPDRLD--EATLVEALADLGPAQAYSAEGYARLRAYARELGLLRYRLD---QSLPELI 607

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
             ++  +    + V             L     +  G   +       ET     A  + +
Sbjct: 608  ADIERTTGLDVEVAVRAGGEGAGDAGLARAHLDALGDVAARF---SGETPGATLAGFLAY 664

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL- 664
            +        G            + IL    ++ L +D + + GL+ GVWP     +    
Sbjct: 665  LAAAEDEERGLAPGEVEVVEGAVQILTAHAAKGLEWDVVAVAGLSRGVWPGPVRNSDHWL 724

Query: 665  -----------------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
                                       Q  +    AE      AHD        ++  TR
Sbjct: 725  GGLGVLPFPLRGDADGLPELALAEAADQRAVARTMAEFTDAWRAHDEREERRLAYVAVTR 784

Query: 702  SLR-----------ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
              R               P   S  L+ +          +L                T  
Sbjct: 785  PRRLLLCSGHWWGEGTKRPRGPSALLREIHDACLDGGPGHLVDEWTPEPTPDAVNPTTEV 844

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQL-----------INDPYAVYARRILKLDFIPHF 799
                + P     +       + + +++             +DP     RR   L      
Sbjct: 845  VLRAEWPADPLGVRRPALAEAAALVRRFLTGEGGPDNSAASDPQVARWRREADLLLAERA 904

Query: 800  K-----------------------KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
            +                          D           +         + T     L +
Sbjct: 905  ELSRLSGPIDVVLPEQLSVTQLVSLRRDPAALARTLRRPLPAEPNPYARRGTAFHAWLEQ 964

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
            +         +  P            ++           +    I V +P    I   G+
Sbjct: 965  RFGADRLLDTDELPGAADEDAAPDEALAELQRRFLASEWADRTPIEVEVPFATVI--GGV 1022

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             + G  D +        D+ D+KTG  P   +A+     QL++   A    +   +D   
Sbjct: 1023 VVRGRMDAVFRRPGDRFDVVDWKTGARPTGASAEVA-AVQLAVYRLAWAELAGVPVDRVG 1081

Query: 957  VA 958
             A
Sbjct: 1082 AA 1083


>gi|302553995|ref|ZP_07306337.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM 40736]
 gi|302471613|gb|EFL34706.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM 40736]
          Length = 447

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/435 (13%), Positives = 113/435 (25%), Gaps = 67/435 (15%)

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA----H 686
            +    S+ L +  +++ G+ EG+WP    +   L         L          A     
Sbjct: 1    MTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEERRL 60

Query: 687  DFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
             +  A   R  L+ T      +     SR+L  L V           +R         +L
Sbjct: 61   FYVAATRARERLVVTAVKAPADDGDQPSRFLTELGV--EPRDVTGRPRRPLSVAALVAEL 118

Query: 746  DYTTKQPHYK----------------------RPKPFPPLEAQPRT-------------- 769
              TT  P                         RP        +                 
Sbjct: 119  RATTVDPRVSDALREAAARRLARLAALADEDGRPLVPSAHPYRWWGMFEPTESKVPLRNR 178

Query: 770  -----YSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                  S S + QL N      +  R      +            G + H +  E+    
Sbjct: 179  DQPVVLSGSALDQLANTCALQWFLGR-----EVKADAPATAAQGFGNVVHVLADEVASGH 233

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
               +   +   +   + +    +                    FL+     ++    +  
Sbjct: 234  TPADLSVLMERL-DSVWNALAFDAPWKSDQEKDNARV--ALERFLQWHVMDRTGRTPVAS 290

Query: 884  NIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLE 940
                 + +++    + + G  DR++    G   + D+KTG   P  +  ++   PQL++ 
Sbjct: 291  EHDFDVTLDAGDYQVRIRGQMDRVEADGDGRAYVVDFKTGKQAPTGKEVERH--PQLAVY 348

Query: 941  AAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL--KNLI 995
              A++ G+          +      + L+Q            K  A E          L 
Sbjct: 349  QLAVREGAVDDAFDGVRPEPGGAELVHLRQGAAKRDGGETLPKVQAQEPLAGEWVGDLLA 408

Query: 996  EIVTLLQNGEQPFIS 1010
                 + +      +
Sbjct: 409  TAAGKVLDERFTPTA 423


>gi|220913223|ref|YP_002488532.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
 gi|219860101|gb|ACL40443.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
          Length = 1167

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 119/1113 (10%), Positives = 262/1113 (23%), Gaps = 184/1113 (16%)

Query: 5    KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR--- 61
             P +      S     M   ++        R +         V     T++A  EL    
Sbjct: 56   TPRLVIAGAGSGKTATMADRVVWLVANGWVRPE--------EVLGVTFTRKAAGELASRI 107

Query: 62   -------SEFIEITGKKST----------ILPIIKSLGDVVEE-KFTADLLLSYNLNPPV 103
                                         + P + +             L L    +  +
Sbjct: 108  RAKLVALQRVAARGAGAPMFPAGMISSDALEPKVSTYHSFASGIVSDYGLRLGVERDVVL 167

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                +  +LA  ++   +      +                 I LA   A+ +     EE
Sbjct: 168  LGGAQAWQLATEVVEAYDGEYGHFRAAKSTLVK-------AVIQLAGECAEHLQE--PEE 218

Query: 164  KKWEDLHALKNEKYGMWWL-----------------LAADFLKIASKYWTERLVELNASS 206
             +   +  L + +   +                        +      +T+      A  
Sbjct: 219  VEAWLMARLADYEASPYLAGKQKNPPQAAADIARLLRTRASVADMVGRYTDAKRARGALD 278

Query: 207  PVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                     R       A H+ +     +++     +  A   L S +     G  V   
Sbjct: 279  FGDLVSLAARVARDVPLAAHMERQRYKVVLLDEFQDTSHAQLVLFSRLFG--GGHAVTAV 336

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF---LDIKREDVKRLGNVSN 318
             D +     +   +              T P    A+ +              +    + 
Sbjct: 337  GDPNQSIYGFRGASAGQLFHFVREFPVRTGPAEGSAQWMPAPTSYLTTAWRNGKSILAAA 396

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
             +   S+  +++   P          +    P+       V L    ++ EEA ++A  +
Sbjct: 397  NVMSESLAKAEAQRGPAGGAATAAATVPPLQPSPFAVEGRVVLGRFASDAEEAAALADDV 456

Query: 379  RMSLDENKKK----------SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
                  + +            A++   R     ++ +    GI  ++     L  T    
Sbjct: 457  LKYRVTDFETKPDGSSVAPALAVLCRRRAQMETIRRQFEARGIAYEVVGLGGLLVTPEVV 516

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR----AKNALELVALRGNKNSYD 484
             L + L  +       A+  L+     + G  +    R               G +    
Sbjct: 517  DLVATLRVLADPGRSDALMRLLAGARWRIGPADLMALRDWSSHLARRRGQLSAGPEGDEA 576

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              D  ++    +    +      W  R           L +     +  L          
Sbjct: 577  GDDDGTVPESDLTDGASLVEALDWLPREGWTSSAG-RCLTEVARGRLHRLSVELRQLRGY 635

Query: 545  CGNL---SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
             G+     + +  +  +  ++   L            +  +  ++ F +       +   
Sbjct: 636  LGDDLTTLLGEVERAMLLDIEVAALPGVSIHQARRNLDAFQDAAAGFLRTSHRVDILAF- 694

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN--------EGV 653
             + W++      +G    P       + +L    S+ L +D + + GLN        +  
Sbjct: 695  -LSWLEAAAAEENGLEAPPGDVNREAVQLLTVHASKGLEWDAVFVPGLNAGAFPTDKDSR 753

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYI---------------------GQAAHDFEMAN 692
            W   TA  P+  R  +SDL     ++                        +    +    
Sbjct: 754  WSSGTAALPWPLRGDRSDLPQWDLDQPDQKGWIDAEKDFKAAVQAHGESEERRLAYVAYT 813

Query: 693  GTRHLIYTRSLRENN---IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD--- 746
              +H+++  S          +  S +L  L  L         +            L    
Sbjct: 814  RAKHVLWVSSAAWVGSRSGRSTMSPFLAELETLAAPAAGSPARAGVHPLSLDEAALPENS 873

Query: 747  ------YTTKQPHYKRPKPFPPLEAQPRTYSFSE-----------IKQLINDPYAVYARR 789
                       P+     P  P   +    S              + +L   P     R+
Sbjct: 874  PLTLETEVAGWPYDPLEGPVDPRSGERLRLSGGRRASMEAAAERVLAELAKGPADFRTRQ 933

Query: 790  ------------ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--INKNTPEINHLM 835
                                       R  +G   H            + ++   +   +
Sbjct: 934  DPAKSPGFAGPAAGWAREAALLLLRRSRRSQGQDVHLPTHISASTLVDLEEDPAAVLARL 993

Query: 836  KQIIDSHFEKENLPPHIDIIWRH-------------------------LFHKISHSFLEH 870
            ++ +                W                               +  +F   
Sbjct: 994  RRPVPREPGMSARKGTAFHAWVEDYFGSAGMLDLGEDPGSDDHIDAAYDLDAMVETFRAS 1053

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
            E   ++     +V +P +  +    + + G  D +     G  D+ D+KTG  P     +
Sbjct: 1054 EWAHRA---PAYVEVPVETRV--GDVVVRGRIDAVFRDADGRWDLVDWKTGRRPSGARLK 1108

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
                 QL+    A        +    V   F+ 
Sbjct: 1109 T-RAVQLAAYRLAWAR--LKDVPLESVRAAFFY 1138


>gi|296169029|ref|ZP_06850691.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
            BAA-614]
 gi|295896288|gb|EFG75947.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
            BAA-614]
          Length = 1135

 Score =  130 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 112/1022 (10%), Positives = 240/1022 (23%), Gaps = 124/1022 (12%)

Query: 45   ASVTIYVPTKRAI----QELRSEFIEITGKK-----STILPIIKSLGDVVEEKFTADLLL 95
              V     T++A     + +RS    + G               +        F   L+ 
Sbjct: 107  GQVLGLTFTRKAAGQLLRRVRSRLARLAGVGLGPDGPAPAEPAGAPTVSTYHAFAGSLIR 166

Query: 96   SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155
             Y L  PV    RLL    L  +  + +     +L   +  +     +  + L   LA+ 
Sbjct: 167  DYGLLLPVEPDTRLLGETELWQLAFDVVSGYRGEL--RTDKTPAAITSMVLRLWGQLAEH 224

Query: 156  IDIIETEEKKWEDLHALKNEKYGMWWLL----------------AADFLKIASKYWTERL 199
            +           +L  L +      +                      L         R+
Sbjct: 225  LVDTRQLGDTHVELERLIHTLPAGPYQRDRGPSQWLLRLLATQTQRAELVPLLDALDARM 284

Query: 200  VELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANH 252
                         +  R  A         +G    +++     +  A    +S +     
Sbjct: 285  RAAKTMDFGVQMASAARLAANFPQVGEELRGRYRVVLLDEYQDTGHAQRVALSALFGGGV 344

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
             +G  +    D       W   +  +    +++   +      + +L          +  
Sbjct: 345  DDGLALTAVGDPIQSIYGWRGASATNLPRFATDFPRADGTPAPVLELRTSWRNPPRTLAL 404

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
               +S E   RS+ +      PD         L   +   ++  +D             +
Sbjct: 405  ANAISAEARRRSVAVRPLRPRPDAPPGTVCCALLPDVQAEREWIADE------------L 452

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
            +       +       +A++      A  +   L   G+ +++     L +    + + +
Sbjct: 453  AARYRAAQADGAGPPTAAVLVRRNADAAPIADALRARGLPVEVVGLAGLLSVPEVADVVA 512

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY------DIM 486
            +L  +       A   ++  P  + G  +      +         G  +           
Sbjct: 513  MLRLVADPTAGAAAMRVLTGPRWRLGGRDIAALWRRARQLGEGPGGEGSPESIALAAGHD 572

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
                 + D +A             R           L  H+   +  LV           
Sbjct: 573  ADTPCLADALADPGPADGYSAAGYRRITALAAELRALRGHLGHSLPDLVAEVRRALGVDC 632

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL------------------- 587
            ++  +          +++              E                           
Sbjct: 633  DVRAAAGANAGWAGTEHLDAFADVVAGYAERVELAGAADRCPTASVAGLLAFLDVAETVE 692

Query: 588  ----------FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                          ++  +   A  +EW  +    + G        +++ L     L   
Sbjct: 693  NGLPPAPSVAARDRVQVLTVHSAKGLEWQVVAVAHLSGGVFPSAASRTTWLTDAAELPPL 752

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L              +          LS  +          +   +    +         
Sbjct: 753  LRGDRAAAGALGVPVLDVSAVTNRKQLSDTISEHRRQLDQRRVDEERRLLYVAVTRAEDT 812

Query: 698  IYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
            +             P   S +L  +  +                                
Sbjct: 813  LLVSGHHWGATGIKPRGPSDFLCEIKNVIDRSAAAGAPCGVVDQWAPAPADGDPNPLRDN 872

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLIN------------DPYAVYARRILKLDFIPHFKKD 802
                 +P      R         L+             D     A     L       + 
Sbjct: 873  TVEAIWPADPPAGRRGDVERGADLVARAMSGDPQENTVDVEGWAADVDALLAERARSAEP 932

Query: 803  PDRTDRGTLFHNIITELIK---------KRINKNTPEINHLMKQI----------IDSHF 843
            P R   G L  + + +L +         +      P+ + L+              +S F
Sbjct: 933  PSRALPGQLSVSGLVDLARDPAGAAQRLRHRLPTRPDPHALLGNAFHAWVQRFYGAESLF 992

Query: 844  EKENLPPHIDIIW--RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
            +  +LP   D           +  +F E     +     I V +P +M I      + G 
Sbjct: 993  DLADLPGAADADIGDTPELGALRAAFTESPWAAR---TPIAVEVPFEMPIGET--LVRGR 1047

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
             D +     G   + D+KTG+ P+   A +    QL++   A    + S +    V   F
Sbjct: 1048 IDAVFADPDGGATVVDWKTGEPPRGPEAMRQAAVQLAVYRLAWA--ALSGMPESSVRTAF 1105

Query: 962  YI 963
            Y 
Sbjct: 1106 YY 1107


>gi|134097674|ref|YP_001103335.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|291006367|ref|ZP_06564340.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910297|emb|CAM00410.1| probable ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL
            2338]
          Length = 1078

 Score =  130 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 117/1041 (11%), Positives = 253/1041 (24%), Gaps = 129/1041 (12%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPL-LLASVTIYVPTKRAIQELRS 62
            ++  V    P          A    T+     +   N L     V     T++A ++L  
Sbjct: 19   EQAEVIAAPPEPALVVAGAGAGKTETMAARVVWLVANRLVTPERVLGLTFTRKAARQLAD 78

Query: 63   EFIEITGK--KSTILPIIKSLGDVV------------EEKFTADLLLSYNLNPPVSNIQR 108
                   +   S +L  +   G++                +   L+  + L  PV    R
Sbjct: 79   RVRARLRRLAGSGLLDEVDPSGELRSTVLAGEPTVLTYHAYAGRLVGEHGLRVPVEPGAR 138

Query: 109  LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
            LL       +    +    +DL  +   S        + LA  LA+ +   +      E 
Sbjct: 139  LLTETAAWQLAHRVVSTWTEDLDTDKVPSTV--TGYLLSLAGELAEHLVRPDDLRAHAEA 196

Query: 169  LHALKNEKYGMWWL---------------LAADFLKIASKYWTERLVELNASSPVGYQIA 213
            L                                 L      + +R     A         
Sbjct: 197  LCRTIENAPRAKRQKAELPKDLQKVVATQRLRVALLPLLAEYAQRKRREAAMDFADQMSL 256

Query: 214  LMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                 AEH       +   G +++     +  A   L+ ++        V    D     
Sbjct: 257  AAGLAAEHPEVVAGERERFGAVLLDEYQDTGHAQRVLLRSLFGQGRTMPVTSVGDPAQAI 316

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              W   +  +    +++    +        LL       E ++    VS  +    + + 
Sbjct: 317  YGWRGASAANLPRFTTDFPKDSMAPARRYGLLTSFRNPPEVLRVANAVSAPLREAGLEVE 376

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
            +               L + +   +                 A  IA     +LDEN + 
Sbjct: 377  ELRAKDGAEAGDIRVALADDVRQERDWV--------------ADRIAAQWHAALDENGRP 422

Query: 389  --SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              +A++   R     +   L   G+ +++     L        L S L  +       A 
Sbjct: 423  PTAAVLVRRRADMADLAAALRDRGLPVEVVGLGGLLDEAEVRDLVSALRMLVDPLAGTAA 482

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              L+     + G  +      +         G   S D     +  L     ++      
Sbjct: 483  MRLLTGSRWRLGAADIAALWDRARELGERAFGAPESEDPTAAVAAALPGEHAEQAGLVDA 542

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  +E   E     +  + + +  L               ++D  +  +  ++++  
Sbjct: 543  LDDPGNAERYSEPGYQRIRRLGRELANLRRRLEQPLPEL----VADVERTLLLDIESLSR 598

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                   +L           +      + S      ++++    R  DG           
Sbjct: 599  PGGAGRIHLD-----AFADVVTDFATASPSATLPALLDYLAAAERAEDGLEPGEVEVADD 653

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR------------------VM 668
             + +L    ++ L ++ + L  L   V+P     + +L                     +
Sbjct: 654  RVQVLTVHAAKGLEWEVVALPHLVRDVFPGKRKASSWLRAVTELPARLRGDAQDLPRLDL 713

Query: 669  QSDLNLKTAEKYIGQAAHD---------------FEMANGTRHLIYT---RSLRENNIPT 710
                 +   E      AHD               +     +   +           + P 
Sbjct: 714  DRLQGMDRKEIVEALEAHDDEFEDRRLTEERRLLYVAVTRSERSLLLSGHWWAEGGDKPK 773

Query: 711  IASRWLQRLLV--------LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
              S +L +L          +         +       +  R  ++       +R      
Sbjct: 774  GPSDFLLQLAEVVKSPDVGVVEQWSPQPPEDAPNPLAEAVRSAEWPVDPLGTRRDAVAEG 833

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRIL--------------------KLDFIPHFKKD 802
                       +      +    +AR +                      L      +  
Sbjct: 834  ANLVLAALDAVDSAAPDEEDEDGWARDVDVLLAERAAAARRRDQVRLPEHLSVSQLVELA 893

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
             D           +         + T   + L  +   +     +  P            
Sbjct: 894  DDADALARRLRRPLPYPPNPMTRRGTAFHSWLEHRFTSTALLDFDELPGAADESATPHDD 953

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
            +            +      V +P +  +E  G+ + G  D +     G   + D+KTG 
Sbjct: 954  LEMLQQAFLAGSWAERTPHRVEVPFETQVE--GVVVRGRMDAVFADSDGGWTVVDWKTGA 1011

Query: 923  NPKKETAQKLIDPQLSLEAAA 943
             P  +   + +  QL+    A
Sbjct: 1012 VPAGDQV-RALSVQLAAYRLA 1031


>gi|260463224|ref|ZP_05811426.1| double-strand break repair helicase AddA [Mesorhizobium opportunistum
            WSM2075]
 gi|259031074|gb|EEW32348.1| double-strand break repair helicase AddA [Mesorhizobium opportunistum
            WSM2075]
          Length = 1166

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 95/886 (10%), Positives = 216/886 (24%), Gaps = 83/886 (9%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
              ++RL +LAR  L       D  K         LP      +  +  + + +D +    
Sbjct: 282  DPVRRLQQLARAFLKTDGDPYDPAKAFKKALTDRLPDLADRYLSASSAIIETVDRLALFR 341

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                   AL                      +                   +   A    
Sbjct: 342  MLEGTAAALTIAD-------------WLIARYEVLKRGRGFLDFNDLITRTVNLLARPDA 388

Query: 224  KGT--------KGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHI 266
                          I++  +  + P    ++  +A                V    D   
Sbjct: 389  GPWVQYKLDQGIDHILLDEAQDTSPDQWEVVKRLAEEFFAGFGARDRVHRTVFAVGDEKQ 448

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQ---YSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                +      S   +    +         ++  KL        + +  +  V  +   R
Sbjct: 449  SIYSFQGAAPDSFADSRLLFSSRVRDAEASFADLKLTWSFRSTDDVLSAVDRVFADPVVR 508

Query: 324  SMVIS--------KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN---EREEAI 372
              +                         I  + +         +    A         A 
Sbjct: 509  RGISHDPDPLSHKAIRTDAPGYVEVWPSIGADIVDEPDDWTQAIDHAHAPAVRVAENVAT 568

Query: 373  SIAIAL--------RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            +IA  +        R           L+    +    +   L R  I +  +  + L   
Sbjct: 569  TIAGWIGNGEIIEGRGKRLRPGDVLVLVRKRDSFVHALTRALKRRDIPVAGADRLSLPGH 628

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
            +    L +L   + +  D +++A +++ P+        +   A+ A  L      +    
Sbjct: 629  IAVKDLIALGRLLIQPQDDLSLAAVLRSPIFDLPEETLFALAAQRAPGLSLATSLRQHAG 688

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              +  ++V+ ++     +        +   E     +       + I  L     +    
Sbjct: 689  ESEALAIVVAQL-----DIWTDEAAFKPVFEFYAGLLARDGVRRKMIARLGPEAGDILDE 743

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
              +  +++           +             E  G  +     +  +    +  +A +
Sbjct: 744  FLSFCLAEERTGLPGLEAFLST----------LENAGPEIKREMDQTRDEVRVMTVHAAK 793

Query: 605  WIDI-ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
             ++  +  L+DG +     +    L            +       +  G      A+   
Sbjct: 794  GLEAPVVFLVDGGSAPFSDQHLPRLMPFDGSGWVGKGYLWRSASDVANGFSKAAAARARE 853

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
            L+      L      +   +            +     S+    +        +     G
Sbjct: 854  LADDEYRRLLYVGMTRAEDRLIVCGYHGKRAPNTGTWHSIVSRALIGAPESEQRAHPAGG 913

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP--KPFPPLEAQPRTYSFSEIKQLIND 781
               +  ++ +     L    +   T           +P PP E  PR  S S    LI +
Sbjct: 914  EPVYRFHVTELPPVALATAEQARQTDAFGPLPTNLFRPLPPFEDLPRPLSPSGASALIEE 973

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
                   +   +  +    +      RG   H ++  L     ++        + +    
Sbjct: 974  GKETVVDKASPV--LDADAEPGFAVLRGLALHKLLQMLPGIAEDQREGAAARYLARTGAE 1031

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
                   PP            I      +  ++ +   +  V I   + +      ++G 
Sbjct: 1032 ------WPPAEREKALASVIAILAD--PYLGQLFAPSSRAEVAIMGSLEVRGKNRSISGK 1083

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALK 945
             DR+ +     V I DYKT                 QL+L  A L+
Sbjct: 1084 IDRLAVTPD-AVSIVDYKTNRPAPAGLAEVPPAYLLQLALYRALLQ 1128


>gi|126179444|ref|YP_001047409.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
 gi|125862238|gb|ABN57427.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
          Length = 1080

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 108/920 (11%), Positives = 228/920 (24%), Gaps = 107/920 (11%)

Query: 55   RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELAR 114
            R   E    F+          P I++L D+              L      +   + +A 
Sbjct: 196  RCQTEALEAFLSRAA------PSIETLRDLAARYPGERDPAGAYLRAVEPCLAGEIAVAE 249

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174
            L  +  N                   +   A         ++    T+      L  L  
Sbjct: 250  LAAVHDNSGFRKNMGQKKNWEGDDLDNLRAAYG-------VLRQCLTDHAGACSLT-LDA 301

Query: 175  EKYGMWWLLAADFLKIASKYWTERL-------VELNASSPVGYQIALMRAEAEHLM---- 223
                 +     DFL+     +   L         +NA           R   +       
Sbjct: 302  AD--PFTRATLDFLRDLGVVFKAFLDSVEAEKRRMNALDFDDLVNRTHRLFRDRGDIVET 359

Query: 224  --KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
              +     I++     + P    ++ T+    + A +    D      ++          
Sbjct: 360  HFRSRFRFILVDEFQDTDPVQIAIIRTL--LGDSANLFVVGDPKQSIYLFREAD------ 411

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
             +  +      +  L      LD+       +   +      S +++++  P +      
Sbjct: 412  VTQFSHTRDLIERDLGGETVALDVNFRSTPEVVGFT--NAVFSALMAEAGRPWEFLYEPL 469

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-------------- 387
                 +   +++          A   R EA   A  +R  ++  +K              
Sbjct: 470  HAFRRDDAGSVELLLCQKIRDRAAGRRAEAEMAARKIRSLVERGEKRVSRDGEVRPAGYG 529

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
              A++   R      +  L R+G+   + AG+          L ++L  +    D  A+ 
Sbjct: 530  DVAVLLERRTNLAYYEWALARYGVPYHVHAGLGFYERQEVYDLYNILRFLANNLDDAALY 589

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             +++ P   F     +         L              L+  +     +         
Sbjct: 590  GVLRSPYFGFSDARLFHIARAPGASLWERLQAAAEPAAATLREWL-----SLSRRLPPAR 644

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
               R+ +E     V       +     V             +++ +       +     +
Sbjct: 645  LLRRIVDESGIFVVFGGMAGGEQAAANVEKLIALARDADCSTLAGFVAELGRSIDAGDRE 704

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE-TVKPKIEKSS 626
                L       +  +  S+    +     ++   +   D+      G  T+  +     
Sbjct: 705  GDAPL-------DLASADSVSIMTVHAAKGLEFPVVVVPDLAETPRSGGGTIMVEDGLLL 757

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             + I             ++    +E    +   +       +    +       +  A  
Sbjct: 758  GVSIPNPANDHEREETPVLRLLKDEYRQKEEAERKRLFYVAVTRAEDHLILCGEMPVAVP 817

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
            +      TR       L   +      R    L  L      D               L 
Sbjct: 818  ESLRDARTRMAWLAHCLGLCDEVYA--RGEAVLGTLRIPITLDPAAIPVDVQETVPVCLP 875

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                 P    P   P    + R YS SE++  +  P             +P F    D  
Sbjct: 876  VPDDVPAAPVPAGIPSNGKKERVYSASELEAYLRGPAE---------SRLPVFAAGEDAL 926

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
             RG + H +          ++                 +  L P   + ++ L+ +    
Sbjct: 927  TRGLVVHEVF-------RGRDPAA-----------VLRRYGLDPAGAVEYQELYVR---- 964

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
            FL         I +    +P    +   G    G  DR+    +G   + DYKTG     
Sbjct: 965  FLASPLMR--GIVRDHREVPFSARVN--GFAFRGVIDRLVQRVNGTWMLIDYKTGTPGDA 1020

Query: 927  ETAQKLIDPQLSLEAAALKA 946
                     Q+++   A   
Sbjct: 1021 GE----YAIQMAVYHRAAAQ 1036


>gi|86747755|ref|YP_484251.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2]
 gi|86570783|gb|ABD05340.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
            palustris HaA2]
          Length = 1161

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 95/867 (10%), Positives = 214/867 (24%), Gaps = 94/867 (10%)

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK-IASKYWTERLVELNASSP 207
            A  +    + ++ E  + E L   +          A   +    ++       E      
Sbjct: 313  ADPMPGFAEDLKREGARLEGLLERRRALLMRERTRALLVIAFDVAERIRREKQERGLLDY 372

Query: 208  VGYQIALMRAEAEHLMKGTK-------GPIIIAGSTGSIPATARLMSTV---------AN 251
                   ++                    ++I  +  + P    +++ +         A 
Sbjct: 373  DDLIDRTLQMLDSGASSWVHFKLDRGVDHVLIDEAQDTSPKQWDIVAHLIAEFTAGEGAR 432

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH----------PQYSLAKLLD 301
                  V    D       +     K             H            YS      
Sbjct: 433  EGIKRTVFAVGDEKQSIFSFQGAVPKEFAERRDLLQRRFHGAGLAFEKVSFNYSFRSGAT 492

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKS--FLPPDTSDMRNTDILENKIPNIQKCFSDV 359
             L       +      +     S  + ++     P   D+   ++ ++K           
Sbjct: 493  ILQSVDHVFRDPDIYRSIHADTSYPLHEALTDAGPSLIDLWPLEVPDDKQEIEGWRAPFD 552

Query: 360  ALIEADNEREEAISIAIALR--------------MSLDENKKKSALITADRNLARRVKLE 405
            A+ E   E   A  +   +                          L+    +    V   
Sbjct: 553  AVSETSPEVRLADKVRAEIASLIASGTMTGPRDDRRRLRYGDVLVLVRRRGSAFDAVIQA 612

Query: 406  LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
            L R GI +  +  + L+  +    L +L +A+    D +A+A  +K PL  F   + +  
Sbjct: 613  LKRGGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGFDDDDLFRL 672

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
              +                   L++ + D+ A     T V H     +E+ +        
Sbjct: 673  AWRRK---------------GSLRAALRDKAAGDAKLTAVLHRLDTCAEQSQAETPFGFY 717

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
              L            +     N ++ ++ +L ++  +        +    W       + 
Sbjct: 718  AWLLGGDGGRARILRRLGPEANDALDEFLELALSFERK--QPPSLQGFVAWLRAADTEIK 775

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                   +    +  +  + ++ +   +   T  P   +   L  L    ++      ++
Sbjct: 776  RDMEISRDEVRVMTVHGAKGLEALVVFLVDTTSSPADSQRLNLIRLPGGNAQPGAPSAMV 835

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
              G                 R ++       ++         +         +       
Sbjct: 836  WAGRKADD-----------PRAVEQARAAMISDTEDEYRRLLYVAMTRAADRLIVGGCMP 884

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP---- 761
             N   + +     L+  G  +    ++          R      +      P   P    
Sbjct: 885  GNRNDVRALSWYDLISKGLENSGLAMRAVPPPDGAVKRYCRPEDEVVETAAPDETPAAAP 944

Query: 762  ---PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
               P        +      L+    A  A    +L       +      RGTL H ++  
Sbjct: 945  LILPNWLHRSAPALRAPDNLLRPSDAHDADHR-RLRRGESEAQRQRALQRGTLVHRLLQS 1003

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
            L     +         + +      +++       ++      + +  F        +  
Sbjct: 1004 LPDLPADARASAAARYLARNAKDWNDEDRDALAARVLQVITATRFAVVF--------APG 1055

Query: 879  EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQ 936
             +  V I  ++      + ++G  DR+ +     V I DYKT   P             Q
Sbjct: 1056 SRAEVPIAGRLQRHGEPVLVSGQIDRLVVT-DAEVLIVDYKTNQVPPRSLAETPPAYLRQ 1114

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYI 963
            L+L  A L          R V      
Sbjct: 1115 LALYRAVLARL----YPQRPVRAALLW 1137


>gi|317121623|ref|YP_004101626.1| ATP-dependent nuclease subunit B [Thermaerobacter marianensis DSM
            12885]
 gi|315591603|gb|ADU50899.1| ATP-dependent nuclease subunit B [Thermaerobacter marianensis DSM
            12885]
          Length = 1306

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 112/1009 (11%), Positives = 232/1009 (22%), Gaps = 168/1009 (16%)

Query: 56   AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115
              Q L +E   + G++      + S   +          +     PPVS + + L L  L
Sbjct: 47   MEQALLAELGRLAGRRGFARTRVASFQRLAWWI---QQEVGGGTAPPVSELGKRLILRAL 103

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH----A 171
            +                   L L    A+       LA  +  +       EDL      
Sbjct: 104  VTR-------------EAGRLKLFRQVADRPGFVDRLAVTLAELAAYGVGPEDLRSRYEQ 150

Query: 172  LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231
            +   +      +    L +  + + E L E     P      + R   +         + 
Sbjct: 151  MDRAQREGLLGVKLHDLALLLQAYQEYLAEHGLEDPAYAFDRVARQIRDS-RWLRDARVW 209

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT----------------------- 268
            + G TG   A  R+++++        V   LD                            
Sbjct: 210  VDGFTGFTTAELRVLASLMRVAQRVEVSLCLDPDEAPWAVQGVPGPGTAPGGPSGTPGGV 269

Query: 269  --------AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
                     +     +        + +   HP +  A+ L  L  +         V   +
Sbjct: 270  RPGRDPAMPVHRPAGKGPGAGEGRDESALFHPTWVTARQLLDLARQEGV-----GVEPAL 324

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
                   S              ++ +            V L+ A + R E  + A  +  
Sbjct: 325  TLTGRGRSLPRFRNPALAHLERELFQFPGRRFPGLADGVTLVAAPDRRAEVAAAAREMLR 384

Query: 381  SLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
               E          ++         +       GI + +    P+       ++ + L  
Sbjct: 385  LAREEGYRFRDMVVIVRDLETYHDLLVSACAEHGIPLFVDRRRPVGHHPLIELVRAALEV 444

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL-VLDR 495
            +     + A+   +K  L                   +              +   +   
Sbjct: 445  VAGDWPYEAVFRYLKTDLVPVPRGAVDRLENYVLAFGIRGSLWYGKGRWTWRRHDSLEAD 504

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-------------------- 535
             A +          + + +E         D +       V                    
Sbjct: 505  EAPRPEQEAELEAVNGIRDEATAHLRRFFDRVKSSRRQPVPARDLARALYALLLDLDIPA 564

Query: 536  -------------TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
                           +  +        +S+  +     L  + L     L  L    EG 
Sbjct: 565  QLQRWSEEAERDGDLEAAQEHLQVWNGVSELLEQVEASLPEIHLTAGEFLRVLEAGMEGL 624

Query: 583  ---------------TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                           ++             + A    +   I         + +   ++ 
Sbjct: 625  RVGLIPPGLDQVVAGSVERSRHPSARAAFVLGATDDAFPRRIEEDAIFTDREREELAAAG 684

Query: 628  LFILGTLESRLLN---FDTLILGGLNEGVWPKNTAKNP--------FLSRVMQSDL---- 672
            L +      R L+   F  + L    + +W      +         +L+R M+  L    
Sbjct: 685  LDLGPPGRVRALHEQYFAYVALTRARDRLWVSYPLGDEEGRAVAPAWLTRRMRVLLPGLE 744

Query: 673  ----------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
                       + T  + + Q A     A                     +     L   
Sbjct: 745  VSPADVPGPEGVATPAQAVDQLARLL--ACRRHRAADPAGPAAAGAGRGTAEPWAVLYQW 802

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
              TD     + R                +   ++       EA     S S +++    P
Sbjct: 803  AVTDPDVQPRLRKALAAVAYGNHIPPLGRDLARQLYARMAGEAWELRTSVSRLERFAACP 862

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQII 839
            +  +A   L L          D    G ++H  ++ L +K               ++ ++
Sbjct: 863  FQHFAAFGLGLRERE--VGRLDAPRLGRVYHAALSLLSRKVWEAGIDWADLSEARLEAMV 920

Query: 840  DSHFE--------KENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAKM 889
                +        +                +I         E   + +   + V      
Sbjct: 921  AECLQEIAPRLRGELAADSAYYEHLLRDAGRILTRTALRLAEHARRGTFRPLAVEADFGP 980

Query: 890  AIE------------SIGIHLTGFADRID--LLKSGFV--DITDYKTGD 922
                              + L G  DRID    ++G     + DYK+  
Sbjct: 981  EAGARLPFEPWELSTGERLALRGRIDRIDGARTEAGRWLIRVIDYKSSR 1029


>gi|109947353|ref|YP_664581.1| hypothetical protein Hac_0793 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714574|emb|CAJ99582.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 778

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 122/377 (32%), Gaps = 55/377 (14%)

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
               +        + ++ TLE+R + FD +++   NE   P     + FL+  ++  LNL
Sbjct: 391 EANFRLDDSSGGKIRVMDTLETRGMQFDKIVIADFNESCVPNLKDCDLFLNSALRKSLNL 450

Query: 675 KTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
            T         H +      ++ ++ +    E +     S  L  L +            
Sbjct: 451 PTLLDKKNLQKHYYYQLFKNSKEMVLSCIESETSKV---SNMLLELDLNLEPIKDAYTLF 507

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                 D+                +       +   +S S +   +      Y   I   
Sbjct: 508 ATSPLKDYQE--------------EDIKATIPKGFCFSASSLNTFLACKRRFYYHYIKCF 553

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                 +        G+L H ++ E  +K  + N   +   + Q+++    +EN  P   
Sbjct: 554 KESSKDESSST---VGSLLHELLKEAYEKNKSPNL--LKERLIQLLE---TRENTTPKER 605

Query: 854 IIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
           +       KI  +F   E++  +  I  + +    +  IE  GI   G  DRID      
Sbjct: 606 LDTLVAIEKI-QAFYRKEQQRFNEKITILDLERSFEEPIE--GIVFKGRIDRIDKTADNE 662

Query: 913 VDITDYK----------------TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             + DYK                T      E A++  D Q+++   ALK   +      +
Sbjct: 663 TILLDYKFKSDLKLDNMSKRKNLT----PTEIAKESTDYQMAIYVYALKNLGYE-----E 713

Query: 957 VANLFYIRLKQKFKIDC 973
               F+  LK+   ++ 
Sbjct: 714 PIKAFFYDLKKGELVEE 730


>gi|118593731|ref|ZP_01551100.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614]
 gi|118433641|gb|EAV40304.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614]
          Length = 1178

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 89/862 (10%), Positives = 205/862 (23%), Gaps = 80/862 (9%)

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE--KKWEDLHA 171
             ++     +   ++  L     ++     ++ + LA  +    +  +T      +EDL  
Sbjct: 327  EMLEALEAEQQRLLALLDQRRKVATYEGTSSLLRLADAVIGHYERAKTARGYLDFEDLV- 385

Query: 172  LKNEKYGMWWLLAADFLKIASKY-WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
                      +  A  L+ +    W +  ++      +                 T    
Sbjct: 386  ----------VKTATLLQKSDAALWVQYKLDQGLDHILV--DEAQDTSPRQWEVVTSLAS 433

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
                 TG+      L   V +         G       A+    + K+        + + 
Sbjct: 434  EFFAGTGARDRVRTLF-AVGDEKQSIYSFQGAVPAYFDAMRRAFSGKAEAAELEFHSVN- 491

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
              Q S     D L    +                  + ++               E +I 
Sbjct: 492  -LQLSFRSTPDVLGAVDKVFHDESAHKGLSQDVKAPVHEAIRRDPGIVDLWPLEAEAEIE 550

Query: 351  NIQKCFSDVALIEADNE-----REEAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405
                    +  + + +      R  A  IA  +R    +      L+         +  E
Sbjct: 551  EPDDWRQPIDHVGSGSPMLKVARRIAAEIAQWMRDGTADPGDVMILVRKRGPFVEALNRE 610

Query: 406  LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
            L    I    S  + L+  +    L +L   +    D +++A ++K P            
Sbjct: 611  LKELDIPAAGSDRLVLTDHIAVQDLAALGRFLLLPEDDLSLACVLKSP---LFDLTDDDL 667

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                      +R       ++          A +            +   +    +L  D
Sbjct: 668  LEVARETPEKVRPGTLWQMLVKRSDTSDKWKAVRAKLEDWRARADFVPPYEFYARLLGAD 727

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
               +           +     +  + ++  LT+   Q+        L   W       + 
Sbjct: 728  GGRKAFRA-------RLGVEVDDVLDEFLALTIAYEQSGTPGLEGFLA--WMAAAPTEIK 778

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL-GTLESRLLNFDTL 644
               +        +  +  + ++    ++      P        F+    LE+ LL    +
Sbjct: 779  RELTNTKGMVRIMTVHGSKGLEARIVILVDPGAAPVSAIHDPAFLPRRRLENDLLPPALV 838

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
             L    +             +    + +      +        +         +      
Sbjct: 839  WLPPKADR------------TPWHDAAVEALRDAQEEEYRRLLYVALTRAEDRLIVCGWE 886

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR-------- 756
                      +      L                  W ++      +             
Sbjct: 887  PKRGAHENCWYSMVSRALKPEARELTASDGAVSAWRWQKEGTAAGPEAGGAAHVSAEPGS 946

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK-------DPDRTDRG 809
             +P  P           + K+L              +D +P   +            +RG
Sbjct: 947  EEPPLPDWLSTPVRPLPKKKRLQPSRAFEAMEEKEGIDPVPAVSRLQAGRDLASWPLERG 1006

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
             L H ++  L      +        ++Q +   F   +              +   + L+
Sbjct: 1007 RLIHRLLELLPDIAEGERLAASEAYLRQALKPEFADRSSH----------LLREVAAILD 1056

Query: 870  HEEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTG--DNP 924
              E            +P    I   +   + ++G  DR+ +++   V I DYKT      
Sbjct: 1057 MPEFETLFCGHARAEVPLVGTIRASDGTEVEISGQIDRL-VVEDNRVVIVDYKTNFHPPA 1115

Query: 925  KKETAQKLIDPQLSLEAAALKA 946
                       QL +    LK 
Sbjct: 1116 SVAEIPLEYRAQLCVYREMLKQ 1137


>gi|238854634|ref|ZP_04644964.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii 269-3]
 gi|260664423|ref|ZP_05865275.1| ATP-dependent nuclease subunit B [Lactobacillus jensenii SJ-7A-US]
 gi|282932975|ref|ZP_06338372.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii 208-1]
 gi|238832424|gb|EEQ24731.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii 269-3]
 gi|260561488|gb|EEX27460.1| ATP-dependent nuclease subunit B [Lactobacillus jensenii SJ-7A-US]
 gi|281303010|gb|EFA95215.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii 208-1]
          Length = 1151

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 97/760 (12%), Positives = 216/760 (28%), Gaps = 97/760 (12%)

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL- 382
            S    +S +   T+           + + ++   +V LI+AD+  +EA  +A  +   + 
Sbjct: 264  SHEQYESPVKDLTAKQLLDHYWTGDLESNEQTKPNVQLIKADSRYDEAYFVARTIYQQVS 323

Query: 383  --DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                  +   ++  + +         L + GI         +        + SL   +  
Sbjct: 324  LNKFRYQDFLVLAPNLHEYETYLTPILRQNGIPFFNDLQKEMKYHPLVIFIESLQTILET 383

Query: 440  LNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
              +  ++  L+K  L    F   E    R  + LE   L    N Y      +  +    
Sbjct: 384  GFESASLFALLKTRLFIPAFYHDEAAFLRDVDELENFVLAHGINYYLWNRPLTSFVK--- 440

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWT 554
              K        ++   E  ++L  +++  +   I         K               T
Sbjct: 441  -IKRPVITLDKRATEIERLEKLRQVIIKELSHFIEQFKKTSEVKAGVKFFFDFLVKIGLT 499

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET-GSCIKANAIEWIDIITRLI 613
            K   T  +   +D++    +   ++    L +L +  +       + +A +++ I+    
Sbjct: 500  KRLETWRKQ-AIDKNDLQASQEPKQIWDLLLNLLNDFLLINKPEEEFSASDFLRILISGF 558

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL- 672
                          + +      +  N+  + + G +    P+ +    FL+    + + 
Sbjct: 559  KEANFAQIPASLDAVSLSEMGMVQAKNYKNVFIIGASSSNLPQISNTPGFLTSENLAQIS 618

Query: 673  ------NLKTAEKYIGQAAHDFEMA---NGTRHLIYTRS-LRENNIPTIASRWLQRLLVL 722
                   L+  ++           A     +  +  +   L   N     S +  +L  L
Sbjct: 619  SADTDNALEDRQELANLDQDYQFGACLTLASNWVYVSYPFLNTANESIQPSTYYTKLQEL 678

Query: 723  GGTDFFDNLKKRGQC---------------YLDWTRKLDYTTKQPHYKRPKP-------- 759
            G  +       +                  YL         T     K   P        
Sbjct: 679  GARELEQADLPKEDASDILSFTTNAKASLGYLTNLSPAYQNTLLDLAKNYAPQKYSQLVK 738

Query: 760  ---------------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                              L     T S S+++    +    +    L+L      + + D
Sbjct: 739  GRNYNNQPVNLGEQLARELYGVKLTSSVSQLETYYQNSLEYFFNYGLRLRPR--AENELD 796

Query: 805  RTDRGTLFHNIITELIK-------KRINKNTPEINHLM----KQIIDSHFEKENLPPHID 853
                G  FH     L+K            +  +I   +    KQI      ++ L    +
Sbjct: 797  VIQAGNYFHQTFDYLVKYAHAQQIDLATLSNDQILAALTEVRKQIHQEGSYEQLLSEPFN 856

Query: 854  IIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPA---------KMAIE-SIGIHLTG 900
                    K  ++ +    K +   +     +  +           K  ++    I L G
Sbjct: 857  QYLFTSLDKTVNA-VAFNWKKRMAQTPFRPAYSELAFGSGNKLAGLKFKLDQLREIDLRG 915

Query: 901  FADRIDLLK-SGFVD--ITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS-FSQIDCR 955
              DR+DL      +   + DYK +  N         I  Q+      L   + F   +  
Sbjct: 916  KIDRVDLAPYKNELLGQVIDYKSSSKNFDLALFASGISLQMVSYLDVLAKNASFFGNESL 975

Query: 956  KVANLFYIRLKQK-FKIDCITNDKKKYSADELSEKSLKNL 994
             +   FY  + ++  +++        +   +  E++ + L
Sbjct: 976  DLLGAFYQTITKQVERLNKADQLDSNFLPKKALEQAKQRL 1015


>gi|119475989|ref|ZP_01616341.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143]
 gi|119450616|gb|EAW31850.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143]
          Length = 1153

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 115/892 (12%), Positives = 244/892 (27%), Gaps = 113/892 (12%)

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-GMWW 181
                      +S  +   +    +     L + ++           L  L    +    W
Sbjct: 311  ETQDGDKALAKSLKTNFTALLQDLRSNDELREKLNE----------LRNLPQGHFDRSQW 360

Query: 182  LLAADFLKIASKYWTERL----VELNASSPVGYQIALMRAEAEHL--------MKGTKGP 229
                + L         +L     +        + +A + A  + L        +      
Sbjct: 361  Q-LLESLTRILPALVAQLMTEFQQRGEVDFSQFSMAALDALGDGLNPTELALKLDHQLRH 419

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGA---------IVLPGLDCHIPTAIWNTITEKSTN 280
            I++     +  +  RL+ ++      A          V    D       +         
Sbjct: 420  ILVDEFQDTSSSQFRLLQSLLEGWQEANRNDPNNPRTVFIVGDGMQSIYGFREANVGLFL 479

Query: 281  ITSS----NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI-----SKSF 331
                      T    P ++  +      I     +       ++  RS        + +F
Sbjct: 480  EARRLGVNGVTLVDCPLHTNFRSDPT--IVEWINETFSYAFPQVENRSRGAVPHETAIAF 537

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSAL 391
             P D+S              + +    VALIEA                 +D      A+
Sbjct: 538  NPIDSSSEVKLFGFTGDDAQLAEAGKTVALIEAA--------------QLVDPEGS-IAI 582

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +   R   + +   L+R G+  + +   PL +    + L SL  A++ L D ++   L++
Sbjct: 583  LVRSRGHLKAIIPALSRAGLQWNATDIDPLLSYGTINDLLSLTKAMYNLADKVSWVALLR 642

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             P       + +   + +  + V            D     L     ++        QS 
Sbjct: 643  TPWVGLNNNDLFRLLSVDKAQSVWSAIG------NDEILAGLSSHGKERLGAVRLILQSA 696

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
              +  ++     ++ I Q +    T+  ++         S +    +  L+     E  +
Sbjct: 697  YGDRLRQTPRSWIEGIWQALGGAATHGASE---------SQFVGDFLNLLERFHQGELLQ 747

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
               L+ +  G   +S         S +  +  + ++  T ++ G    P+ +  S L   
Sbjct: 748  SLALFEQAVGGLYASSLPSDSNI-SLMTIHKSKGLEFDTVILPGLGRAPRSDDKSLLMWQ 806

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
              L    L    +I            + ++   + +          E         +  A
Sbjct: 807  EYLSDDGLESGLVISPQA-----AAGSEEDSIYTYLRSEQAASSRLEN----TRLFYVAA 857

Query: 692  NGT-RHLIYTRSLRENNI-----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
                + L  + +   +       P   +  L     +            G   +D     
Sbjct: 858  TRAVKRLYISITSSMDEKSGKAKPPSKNSLLGAAWPVLEDAVQWTDNALGNAVVDKVPAQ 917

Query: 746  -----DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                 +++     ++R      + A       + +K    +     A     L  IP   
Sbjct: 918  FGMNFEHSNPGDSFERLSVAWRVPAWSF---PNPLKTFYLNEAFPVAGNDASLLNIPDLS 974

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
             DP  T  G + H I   L K+ I              +DS      LP    ++ +   
Sbjct: 975  IDPLPTCVGVICHGIFEVLAKQGIGHWQQMNADKRIVWLDSLLRHHRLPASSWVLAKQQI 1034

Query: 861  HKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
             K   + +  +          +     +   M++ +  +      DRI   + G + I D
Sbjct: 1035 VKAVENTVSDDRGRWILSRDKQSSHTELQL-MSVSANTVR-NNILDRILTDEEGNIWIID 1092

Query: 918  YKTGDNPKK-------ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
            YKT             E  + +  PQL+     L A        + +    Y
Sbjct: 1093 YKTSTPGDTETLQQFIEKEEAIYMPQLAAYKGLLSAKL---GGSQPIRTALY 1141


>gi|229821382|ref|YP_002882908.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
 gi|229567295|gb|ACQ81146.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
          Length = 1136

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 129/1077 (11%), Positives = 267/1077 (24%), Gaps = 138/1077 (12%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITG----------------------KKSTIL----PII 78
            + V     T++A  EL                                 + +L    P I
Sbjct: 73   SEVLGLTFTRKAASELAERVERHLALLHRHGLGSGAEPADAELSGASSSAGLLGEDRPRI 132

Query: 79   KSLGDVVEEKFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
             +             L          + +  R    AR++  W   L   +K +     +
Sbjct: 133  STYNAYAGSLVKDYGLRIGVEPDAGLIGDAGRYQLAARVVESWDTDLDVDVKPVTVIGAV 192

Query: 137  SLPISPANAIWL-----AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
            +          L     A+ +  + D +E +E        +      +  L +   L   
Sbjct: 193  ADLAGALAEHLLTPHEAAEAMLRLADELEDKEPVARAKAPMAGVARVVRSLRSRAALMPL 252

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLM 246
               +     E +            R   +        + +   +++     +  A  R++
Sbjct: 253  VAQFAALKSERSVLDFADQVALAARIARDVPAVGEAERTSARVVLLDEYQDTSVAQLRML 312

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              +     G  V    D H     W   +  S     ++   +     S A L       
Sbjct: 313  RGLFG--GGHPVTAVGDPHQGIYGWRGASAGSLLAFDTDFPRADGTPASRAHLTTSWRND 370

Query: 307  R---------------EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
            R                D      V +E               + S     D++      
Sbjct: 371  RAILQAANRVARALRLADEDAAPAVPDEAGESGTAGEAGAAGDEASTPPGPDLVPPLAAR 430

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                  +V    A +  EEA +IA  L       +  +A++   R+L   V+  L   G+
Sbjct: 431  PDAGRGEVRSAFAAHRPEEAATIAAFLADRWRPGRGTAAVLCRKRDLFEPVRAALEAAGV 490

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
               +     L  T   + + + L A +  +   A+  L+  P    G  +        + 
Sbjct: 491  PYQVVGLAGLLRTPEVTDVRAALQAAYDPSRGDALMRLLTGPAVALGPADLVALADAASA 550

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
              V   G+ ++      +      I    +    P W S       +     +  +   +
Sbjct: 551  RTVRRAGDDDAGRGGRREPAEAASIVEVLDQLPPPGWVSPSGRSLSDEGRARLVGLAAQL 610

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
              +              +  +   L V    +              +E     +   +  
Sbjct: 611  RRIRGVAHLPMPDLVTAT-EEILGLDVEVAVHEARAGAGGRARANLDELAAVAAEFDAGA 669

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                         W+D       G          + + +L    S+ L +D +++ GL E
Sbjct: 670  ALATLGAFLA---WLDAAEEHERGLEAAHVEPDPAAVQVLTVHASKGLEWDVVVVAGLTE 726

Query: 652  GVWP------------KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH------------- 686
            G +P                    L   ++ D++       IG   H             
Sbjct: 727  GDFPAVDGGANGVRSSAWLTGVAELPYPLRGDVDHLPELDVIGPVTHKDMDVAREEFRSA 786

Query: 687  ------------DFEMANGTRHLIYTRSLRENNIPT--IASRWLQRLLVLGGTDFFDNLK 732
                         +      RH++           T    SR+L+ ++  G         
Sbjct: 787  AGERELLEERRLAYVAMTRARHVLLLTGSWWGTRKTTLTPSRFLREVVADGSAVPLPPPW 846

Query: 733  --------------------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
                                   +      + L                 L+ +P     
Sbjct: 847  GGTLDAAPAEAAPAEPARAMWPAEPGGATAQALRDAASGVRSWLAAGSDRLDLEPGAEPS 906

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKD--PDRTDRGTLFHNIITELIKKRINKNTPE 830
            +  ++ +    A+   R                  +    L  +      + R      E
Sbjct: 907  ARAREWLWQARALLDEREAAAGEALPADPPGHLSASAVVQLARDP-EAFARARRRPVPAE 965

Query: 831  IN------HLMKQIIDSHFEKENLPPHIDIIWR---HLFHKISHSFLEHEEKIQSSIEKI 881
             N            ++ HF    L    D+           +  +FL  +   +     I
Sbjct: 966  PNPNARRGTRFHAWVEQHFAAAALLDVDDLDDEATDADLDVLRRAFLASDWAAR---TPI 1022

Query: 882  FVNIPAKMAIESIGIHLTGFADRID--LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
             V    +  +    + +    D +         V + D+KTG      +A++  + QL+L
Sbjct: 1023 AVEADVETPLRDGTL-VRCRIDAVFPGRRSGQEVHVVDWKTGTPAADRSAREAREVQLAL 1081

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
               A        +   ++A  F         +        +   ++L  + L  L  
Sbjct: 1082 YRLAWSR--LHGVPVERIAASFVFVGADDGVVTHDAPMLSELEIEDLVGRHLAELRA 1136


>gi|289763385|ref|ZP_06522763.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            GM 1503]
 gi|289710891|gb|EFD74907.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            GM 1503]
          Length = 540

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 63/515 (12%), Positives = 134/515 (26%), Gaps = 83/515 (16%)

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                                 + G  L  +    +   S   A+    ++ +T L     
Sbjct: 29   RWLAAKRAWWCGGCSKPPGNWKRGPPLFDITDHYVSRTSG--ASLRGLVEHVTALQLPVV 86

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-------- 669
                   +  + +L    +    +D +++ GL +G+WP    +   L             
Sbjct: 87   RPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVT 146

Query: 670  ----SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
                    L   E+ +   A            + + +    +   + S +   +      
Sbjct: 147  KDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADG 206

Query: 726  --DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR-----------------------PKPF 760
              +            L     +                                  P   
Sbjct: 207  DGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGAD 266

Query: 761  PPLEAQPRTYS---------------FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
            P         S                S ++ L + P    A R    +           
Sbjct: 267  PSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRE------LP 320

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
            +  G++ H +  E       ++  ++   + + +  H          +         +  
Sbjct: 321  SAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHLPFGAQWYSAN--ELARHRAMIQ 372

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFADRIDLLKSGFVDITDYKT 920
            +F++   + +S + ++ V +    A+E        I L G ADR++   +G + I D KT
Sbjct: 373  AFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKT 432

Query: 921  GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
            G  P  +   +    QL++   A+  G     D    A L Y+       +     D   
Sbjct: 433  GKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDP-- 489

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013
                 L+  +      +V  L        FI+   
Sbjct: 490  -----LTPAARDEWRNLVRQLAAATAGPQFIARRN 519


>gi|225174501|ref|ZP_03728500.1| ATP-dependent nuclease subunit B-like protein [Dethiobacter
            alkaliphilus AHT 1]
 gi|225170286|gb|EEG79081.1| ATP-dependent nuclease subunit B-like protein [Dethiobacter
            alkaliphilus AHT 1]
          Length = 1004

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 114/989 (11%), Positives = 271/989 (27%), Gaps = 156/989 (15%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLA------------ADFLKIASKYWTERLVE 201
             +++ +  E   W +L  +   +                       L +  +   +    
Sbjct: 32   QLLESLSKENVPWLNLRPVTPLELATEQAKPMLLTKNITIPTEGQLLFLLEEILQQMRAN 91

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                                ++  T   + + G T S    +  +           VL  
Sbjct: 92   SQLQYFAELHNQ---NSLTRVLYPTIKELRLTGITASQLNESSFVDPCKGQ-EIITVLTL 147

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
             +  + +  W      +    +  T  ++ P Y + + LD   ++   VK L +    + 
Sbjct: 148  WEEKLSSLNW--ADAATIYNIALQTKTNSSPYYLIPEDLDLSPLELTFVKHLTSHKQIIL 205

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKI--PNIQKCFSDVALIEADNEREEAISIAIALR 379
             +  V++ S     T+         + +  P       ++ ++ A  +  E   + +   
Sbjct: 206  PQDPVLNHSHSHTFTTPQPTPQSPLSWLFDPQNSPQPPELTILRAYGQTNEIRQV-LRHL 264

Query: 380  MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               +     + +          +        I +  + GIPL  T        L+  I +
Sbjct: 265  QQENIPLDNAVVCHTSTKYIPLILTITASQNIPVTFAEGIPLGFTRPGRFTLQLIRWIEE 324

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                + +  L+     +           + A   +    ++       L   +L +    
Sbjct: 325  RYTSLILHQLMTSGDMRLTSATTQARLLRQAN--IGWERSRYIPCTESLHQSILQKA--T 380

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                      ++   +  E    L   + Q  + +       ++T GN+S     +    
Sbjct: 381  AATNEGNDPYAQYLHQQAEHVSTLKQTLTQIFSRI------PDATDGNVSFPKLCRGISQ 434

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC--IKANAIEWIDIITRLIDGET 617
                                +G  L+++   + E            E +  + +++D   
Sbjct: 435  TTSTYARISSPT--------DGLALAAIQDTLTEAAHAFSGTLPLREALRRLHQVLDTLH 486

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS---DLNL 674
                  K   L I G  ++   +     + GL+             L +  +    +L+L
Sbjct: 487  TAASPPKPGHLHITGLNQAAFTHRPVTFMVGLDANFPGSGLQDPVLLDQEREQIHPELSL 546

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL-----QRLLVLGGTDFFD 729
             T E    Q      +++    +I +    +       S         RL     T  + 
Sbjct: 547  LTHEPAKRQYRLARYLSSRRGQIILSYPSYDTVEGRHTSPAAILLQAHRLQTNNPTADYS 606

Query: 730  NLKKR--------------------------------------GQCYLDWTRKLDY---- 747
             L++                                         CY      L+     
Sbjct: 607  ALQESLTTPAGFLAPSPDQFTTLEEWWLTTTLKNLSAHNINTVTACYPHIASGLEAHQHR 666

Query: 748  --TTKQPHYKRPKPFPPLEAQPR---TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
              T   P+  R  P    + +     T S ++ + L N P+  + R +L++      + D
Sbjct: 667  AGTDFTPYDGRVDPDLDRDPRISQTLTLSATQFENLANCPFGYFLRYVLRIQPPEDAEYD 726

Query: 803  P----DRTDRGTLFHNIITELIKKRINKNTPE------INHLMKQIIDSHFEKENLPPH- 851
            P    D   RG+L H+I    +++  N + P+      +  + + +I+   +    P   
Sbjct: 727  PGTWLDPLTRGSLLHDIYCTYLRQTHNPDNPQPPNKQTLLSIAEDLINQTKQTLPPPSDM 786

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-----KMAIESIG------IHLT- 899
            +    +    +    F     +  +  +  F  +P      +     +G      + L+ 
Sbjct: 787  VFEHEKEELLRGLEVF--WRVEESAQTKPAFFEVPFGFGQQEAEEAGLGLSEPVTVTLSD 844

Query: 900  GFADRIDL------------LKSGFVDITDYKTGDNPKKETAQ---KLIDPQLSLEA--- 941
            G     ++                   + D+KTG     E      +    Q +L A   
Sbjct: 845  GK----EIRIRGRIDRIDYGTAENLYQVWDFKTGSTYGYEEQAVFKQGRQIQHALYAFAA 900

Query: 942  -AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
             A LK          + +   Y+    K +                 + +   ++E+++ 
Sbjct: 901  EAILKQSGTDHNAKVEASG--YLFPTDKGEGQRFAR----------LQANRHQILELLSQ 948

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
              +            +      ++  + R
Sbjct: 949  GLDIVATGTFCATDDQNRCTFCDFKIVCR 977


>gi|13474239|ref|NP_105807.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099]
 gi|14024991|dbj|BAB51593.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099]
          Length = 1170

 Score =  128 bits (321), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 102/883 (11%), Positives = 216/883 (24%), Gaps = 75/883 (8%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
              I+RL  LAR  L       D  K         LP      +  A  + + +D +    
Sbjct: 284  DPIRRLQLLARAFLKTDGDPYDSAKAFKKALTDRLPDLAERYVSAASAIIETVDRLALFR 343

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                   AL                      +                   +   A    
Sbjct: 344  MLEGTRAALTIAD-------------WLIARYDVLKRSRGFLDFNDLITRTVNLLARPDA 390

Query: 224  KGT--------KGPIIIAGSTGSIPATARLMSTV---------ANHPNGAIVLPGLDCHI 266
                          I++  +  + P    ++  +         A       V    D   
Sbjct: 391  GPWVQYKLDQGIDHILLDEAQDTSPDQWEVVKRLAEEFFAGFGARDRVHRTVFAVGDEKQ 450

Query: 267  PTAIWNTITEKSTNITSSNTTYSTH-PQYSLAKL------------LDFLDIKREDVKRL 313
                +      S   +           + S A L            L  +D    D    
Sbjct: 451  SIYSFQGAAPDSFADSRLLFAGRVRDAEASFADLKLTWSFRSTDDVLAAVDRVFADPVVR 510

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE-AI 372
              +S++    S    ++  P       +        P+      D A   A    E  A 
Sbjct: 511  RGISHDPDPLSHKAIRTDAPGYVEVWPSIGADVVDEPDDWAQAIDHAHAPAVRVAENVAA 570

Query: 373  SIAIAL--------RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            +IA  +        R           L+    +    +   L R  I +  +  + L   
Sbjct: 571  TIAGWIGKGEIIEGRGKRLRPGDVLVLVRKRDSFVHALTRALKRRDIPVAGADRLSLPGH 630

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
            +    L +L + + +  D +++A +++ P+        +   A+    L      +    
Sbjct: 631  IAVKDLIALGHLLLQPQDDLSLAAVLRSPIFDLPEEALFTLAAQRPPGLSLAASLRQHAG 690

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              +  + ++ ++    +           +         +   ++  + P      ++  +
Sbjct: 691  ESERLAKIVAQLDAWADEAAFKPVFELYAGLL--ARDDVRKRMIARLGPEAGDILDEFLS 748

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                            L  +          +    +      +    +     ++A  + 
Sbjct: 749  FCLAEERTGLPGLEAFLSTLENAGPEIKREMDQTRD-----EVRVMTVHAAKGLEAPVVF 803

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
             +D  +     + +   +    +            +   +  G             +   
Sbjct: 804  LVDGGSAPFSDQHLPRLMSFGGSGRNFDGKGYLWRSASDVANGFSKAAATRARELADDEY 863

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
             R++   + +  AE  +    +  + A  T       S      P I  R          
Sbjct: 864  RRLLY--VGMTRAEDRLIVCGYHGKRAPNTGTWHSIVSRALTGAPEIEQRPHPAGGEPVH 921

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                  L        +  R+ D           +P PP E  PR  S S    LI++   
Sbjct: 922  RFHVTRLPPVAVSADEQARQAD-AFGPLPATLFRPLPPFEDLPRPLSPSGASALIDEGKE 980

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                +      +    +      RG   H ++  L      +        + +       
Sbjct: 981  AVVDKA--SPVLDADAEPGFAVLRGLALHKLLQVLPGIAEGERQGAAERYLARTG----- 1033

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                PP            I         ++ +   +  V I   + +      ++G  DR
Sbjct: 1034 -AAWPPSEREKALASVIAILVD--PRLGQLFALSSRAEVAIMGSLQVRGKTRSISGKIDR 1090

Query: 905  IDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALK 945
            + +  +  V I DYKT                 QL+L  A L+
Sbjct: 1091 LAVTAN-TVSIVDYKTNRPAPVSLAEVPPAYLLQLALYRALLQ 1132


>gi|319957660|ref|YP_004168923.1| hypothetical protein Nitsa_1931 [Nitratifractor salsuginis DSM 16511]
 gi|319420064|gb|ADV47174.1| hypothetical protein Nitsa_1931 [Nitratifractor salsuginis DSM 16511]
          Length = 787

 Score =  128 bits (321), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 82/542 (15%), Positives = 167/542 (30%), Gaps = 59/542 (10%)

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
              +             +  D+      + H    +  L + K ++               
Sbjct: 297  RDRPEYRLPAALLESWNRPDEPEYRRRLAHYGLSLDVLGSLKASERCGVD--------GF 348

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                 +          P      E + L  L  +  +  +    +  EW+ +   L +  
Sbjct: 349  LERFAEAKIPGFELPEPGREPRREEEPLWELRHRFQKLNAGRTLSLKEWLFLW--LEEVG 406

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
             ++    +   + ++G LE+R + FD +++   NEGV P ++ K+ FL   ++    L  
Sbjct: 407  ALRLDDVRGGKVTVMGVLETRGVAFDGVVIVDFNEGVVPASSGKDRFLDSRVRHFAGLPD 466

Query: 677  AEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
                     H +     G +  +   +  EN +PT   R+L  L             + G
Sbjct: 467  RRDREALQKHYYARLLEGAKEAVILYATGENRLPT---RFLYELG-----------LEEG 512

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
            +      + L   +  P           +     +S S ++  +      Y R I  L+ 
Sbjct: 513  REVAAPRKLLYDHSPLPAADADPVVEAFDPTQMRWSASRLRTWLECKRRFYYRYIEGLEE 572

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKR-INKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                +      + G   H ++  L ++R    +  +++     +     E+         
Sbjct: 573  KESEEL-----NEGLFLHRVLEGLFRERDHYDDPEQMSREFAILAARELERHG---SAGR 624

Query: 855  IWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913
                 + +   S+   E K          +    +  I+  G+   G  DRID L    +
Sbjct: 625  YILAYWKRKLESYFREEAKRFTQGWRVESIETAVEGEID--GLRFGGRIDRIDRLGEARL 682

Query: 914  DITDYKTGDNP---KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
               DYK+G      +K    KL D Q+S+    L    F ++      +L ++       
Sbjct: 683  A-LDYKSGSIKEANRKSNLDKLTDFQMSIYDLLL-RSRFPEL------DLAFVTPLDGGS 734

Query: 971  IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
               +   ++K     L  + L  L +           F++      K      Y  L   
Sbjct: 735  FVPVAALEEKNV---LLLEHLGQLKQ--------TCSFVAERCEDLKRCTWCPYQLLCER 783

Query: 1031 AE 1032
             E
Sbjct: 784  GE 785


>gi|319780204|ref|YP_004139680.1| double-strand break repair helicase AddA [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
 gi|317166092|gb|ADV09630.1| double-strand break repair helicase AddA [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
          Length = 1172

 Score =  128 bits (321), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 95/883 (10%), Positives = 211/883 (23%), Gaps = 75/883 (8%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
              I+RL  LAR  L       D  K         LP      +  A  + +  D +    
Sbjct: 286  DPIRRLQLLARAFLKTDGDAYDPAKAFKRALVDRLPDLAERYLSAANAIVETTDRLALFR 345

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                   AL                      +                   +   A    
Sbjct: 346  MLEGTAAALTIAD-------------WLIARYEMLKRSRGFLDFNDLITRTVNLLARPDA 392

Query: 224  KGT--------KGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHI 266
                          I++  +  + P    ++  +A                V    D   
Sbjct: 393  GPWVQYKLDQGIDHILLDEAQDTSPDQWEVVKRLAEEFFAGFGARDRVHRTVFAVGDEKQ 452

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAK--------------LLDFLDIKREDVKR 312
                +      S   +            +                 L     +  +   R
Sbjct: 453  SIYSFQGAAPDSFADSRLLFAGRVRDAEASFADLKLTWSFRSTDDVLTAVDRVFADPAVR 512

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
             G   +    R   I                 + ++  +  +                A+
Sbjct: 513  RGISHDPDPLRHQAIRTDAPGYVEVWPSVGADVVDEPDDWTQAIDHAHAPAVRVAENVAV 572

Query: 373  SIAIAL--------RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            +IA  +        R           L+         +   L R  I +  +  + L   
Sbjct: 573  TIAGWIGSGEIIEGRGKWLRPGDVLVLVRKRDRFVHALTRALKRRDIPVAGADRLSLPGH 632

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
            +    L +L + + +  D +++A +++ P+        ++  A+    L  +   +    
Sbjct: 633  IAVKDLIALGHLLIQPQDDLSLAAVLRSPIFDLPEEALFMLAAQRPAGLSLIASLRQHAG 692

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              +  + ++ ++     +        +   E     +       + I  L     +    
Sbjct: 693  ESERLAKIVAQV-----DIWTNEAAFKPVFEFYAALLARDGVRRKMIARLGPEAGDILDE 747

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
              +  +++           +   E+         E  +T   +    +     ++A  + 
Sbjct: 748  FLSFCLAEERTGLPGLEAFLSTLENAGPEI--KREMDQTRDEVRVMTVHAAKGLEAPVVF 805

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
             +D  +     + +   +   S+            +   +  G             +   
Sbjct: 806  LVDGGSAPFSDQHLPRLMPFDSSGANWDGKGYLWRSASEVANGFSKAAASRARELADDEY 865

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
             R++   + +  AE  +    +  + A          S      P    R          
Sbjct: 866  RRLLY--VGMTRAEDRLIVCGYHGKRAPNAGTWHSIVSRALIGAPESEQRAHPAGGEPVH 923

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                  L        +  R+ D           +P  P E  PR  S S    LI++   
Sbjct: 924  RFHVTKLPPVAPSSAEQVRQAD-AFGPLPATLFRPLLPFEDLPRPLSPSGASALIDEGKQ 982

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                +   +  +    +      RG   H ++  L      +        + +       
Sbjct: 983  AVVDKASPV--LDADAEPGFAVQRGLALHKLLQMLPGIAEPERAGAAERYLLRTGAD--- 1037

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                PP            I         ++ +   +  V I   + ++     ++G  DR
Sbjct: 1038 ---WPPSEREKALASVTSILAD--PGFGQLFAPSSRAEVAIMGSLEVKGKKRSISGKIDR 1092

Query: 905  IDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALK 945
            + +     V I DYKT                 QL+L  A L+
Sbjct: 1093 LAVTPD-TVSIVDYKTNRPAPATLAEVPPAYVLQLALYRALLQ 1134


>gi|254670142|emb|CBA05156.1| exodeoxyribonuclease V gamma chain [Neisseria meningitidis
           alpha153]
          Length = 1069

 Score =  128 bits (321), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 108/875 (12%), Positives = 215/875 (24%), Gaps = 80/875 (9%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIIVQSQGMRRYLNTCLARDLGVAANLS---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W             W  R ++    S         +   
Sbjct: 146 RPQWIDAWQQGRRLGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLE 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 SLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGSRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N D+   K  NI      + ++ A +   E   +   L   L E+        A++T +
Sbjct: 311 QNLDMPSEKAGNINTDDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L+ L + +    +   +  L
Sbjct: 371 IESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D        +        +
Sbjct: 431 LETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAVERMILGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +       +    L T            +I +W       L+ 
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAALLETLSDIVRIWRQPATIGEWVARCRDLLET 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +   E     ++   E         +++ +    +       I  I R +D E+      
Sbjct: 551 LFQAEADDQKSVQNLENEWVKWQAETELAQFSGQLP--QQTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-- 738
                E     R  L  +   R+   +     S  L  L+           ++  Q +  
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIE 724

Query: 739 -------------------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
                                     D+   L  T + P     +P              
Sbjct: 725 QHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPV-ENAEPVAEIGQD 783

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIKKRINKNTPEIN 832
           E  +   +P  V+ ++ L        +               I    I+ R      +  
Sbjct: 784 EFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFEPQHADQIAEIYIEARREGR--DFA 841

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
               +I             +  +W+  F   +   
Sbjct: 842 QTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873


>gi|254776586|ref|ZP_05218102.1| helicase, UvrD/Rep family protein [Mycobacterium avium subsp. avium
            ATCC 25291]
          Length = 655

 Score =  128 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 72/657 (10%), Positives = 167/657 (25%), Gaps = 100/657 (15%)

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
             +A  PL+       L ++L A     D      L+  P+ +         R      L 
Sbjct: 20   PAASGPLAEQPAVRALLTVLLATADGLDGQRALALLTGPIGRVDPVSLRQLR----RNLQ 75

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                 +   D  +L    L   A                         +   +       
Sbjct: 76   RANAGRPPGDFAELLVEALTGTAP-------------PPGAPFRALRRVRAVLDAAGCCH 122

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
               +  +         S   +  ++  +       +   +L        ++  +      
Sbjct: 123  RDGQDPRYILWAAWHQSGLQRRWLSVSERGGPAAAQAGRDLDSVTALFDITDDYV----- 177

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                 A+    ++ +  L         +  +  + +L    +    +D +++ GL +G+W
Sbjct: 178  SRTSGASLRGLVEHVAALQLPGAGPESVATAEQVSVLSAHAALGREWDFVVIAGLQDGLW 237

Query: 655  PKNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
            P    +   L            S        L   E+ +  AA            + + +
Sbjct: 238  PNTVPRGGVLGTQRLLDVLDGVSADASVRAPLLAEERRLLVAAMGRARRRLLVTAVDSDT 297

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNL--KKRGQCYLDWTRKLDYTTKQPHYKR---- 756
               +    + S +   +    G D              L     +               
Sbjct: 298  DGSDREAALPSPFCYEIAQWAGEDAEPAALQPVSAPRVLSAAALVGRLRGVVCAPDGAVD 357

Query: 757  -------------------PKPFPPLEAQPRTYS---------------FSEIKQLINDP 782
                               P   P         S                S ++ L + P
Sbjct: 358  ELERRCAATQLARLAQAGVPGADPASWHGLIPVSTAEPLRGGGDVVTLTPSTMQTLTDCP 417

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                A R    D           +  G++ H +I      + +++  E+   + +     
Sbjct: 418  LRWLAERHGGTDPRDLR------SAIGSVVHALI-----AQPHRSPAELVAELDRAWRHL 466

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLT 899
                                +  +F +     + ++ ++ V +     +   +   + L 
Sbjct: 467  PFAAQWHSD---NELARHRAMLEAFAQWRANTRGALTEVGVEVEIDGTLSTGDGREVRLR 523

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF-SQIDCRKVA 958
            G  DR++   +G + I D KTG  P  +   +    QL+L   A+  G   +     +  
Sbjct: 524  GRVDRVERDAAGRLVIVDVKTGKTPVSKDDAQQHA-QLALYQLAVAHGLLGAAGGDAEPG 582

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013
                + + +      +  ++     D L+  +     E +    +      FI+   
Sbjct: 583  GARLVYVGKTAASGVVEREQ-----DPLTAAAADQWREALRRAADATAGPQFIARRN 634


>gi|284124401|ref|ZP_06386963.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3]
 gi|283829217|gb|EFC33632.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3]
          Length = 1180

 Score =  128 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 104/823 (12%), Positives = 214/823 (26%), Gaps = 119/823 (14%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGS 238
                       + E  +          Q+       ++              ++     +
Sbjct: 344  LLTLYTRVLSDYDEAKLSQGTLDFNDLQLKTRDLLRDNEKIRKELVDRHQYYMVDEYQDT 403

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
                  L+  + N    A +    D       +     +  N T          + SL +
Sbjct: 404  NELQYELVMLLTNELKSANLFIVGDPKQSIYGFRDADVRVFNKTKQKIVREDGKRISLTE 463

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
                L      V    +        +    +          +    +E  I       ++
Sbjct: 464  NFRSLRDVIGFVNYFFSHLMGPGNENEFEVEYEALTQARHAKTNGAIEILIGQDGDPSAN 523

Query: 359  VALIEADNEREEAISIAIALRMSLDE--------NKKKSALITADRNLARRVKLELTRFG 410
               + A          A  +R+   +             A++   R     ++  L   G
Sbjct: 524  EYKLIAQRIENMITDAAETIRVRDKDGKLSERPIQYDDIAILIRARTHLPDIEHALLEAG 583

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDF-MAIATLVKHPLAKFGFPEKYLSRAKN 469
            I    + GI          + + LN +   +D  +++A +++ P       E Y    + 
Sbjct: 584  IPYLTTGGIGFYQRQEIYDIWNYLNFLNNPSDSNISLAAILRSPAFGISDAELYEISLQK 643

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
              +         + D       +   I T K           +    +     LV  I+ 
Sbjct: 644  ETKQEKKSFWDKTLDYQGCTEQLRCAIDTLKT---------HIEFARRMPVNRLVGTIVN 694

Query: 530  ---CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
                I  L T K  K        + D  +          L                    
Sbjct: 695  ETGLIGTLRTGKQGKQRWANYQKLLDLARNFDGDENRQILP------------------- 735

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
                          + I+++DI+      E   P    S  + I+    ++   F  ++L
Sbjct: 736  --------------DFIDFLDILITEEPREGQAPIKASSGAVQIMTVHAAKGKQFPVVML 781

Query: 647  GGLN-----------EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-------AHDF 688
              L+           +  +    +     +   +++  +    K               +
Sbjct: 782  PRLDKKGQTDQEPFIDAEFGIGFSPLHPANDYQKTEPAIVNFMKSRANEKNVAEKKRLFY 841

Query: 689  EMANGTR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY--------- 738
              A      LI + +LR+N+ P     WL   L +G  D   NL  +   Y         
Sbjct: 842  VGATRAEDRLILSGTLRDNSKPQQMLEWLYTHLEIGEADNLLNLDVKQDVYKNGSTIDQH 901

Query: 739  --------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                           D     D T      +           P   S  E+      P  
Sbjct: 902  FRLQIPISRTLTDTTDTDAASDETMPIEFPEDLPSALQPTEVPTALSAPELANYARCPLR 961

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                 +L++  I   + D D  +        +  L++ R   +T  ++  ++Q  ++  E
Sbjct: 962  YQLENVLRIPSIKQAEPDSDENEMKNAI---LYVLMQIREPSDTQNLDTRIQQAFENFPE 1018

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
              +    +         K  +SFL+ E    + +          +  +  G  L G  DR
Sbjct: 1019 IADAETELR--------KHINSFLDSELGQTA-LRASETETNQHIYADVDGHILDGRIDR 1069

Query: 905  IDLLKSGFV-DITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            +   ++G    I  Y TG          +  P++ L +  +  
Sbjct: 1070 LFRDETGHWQAII-YGTG----DAQHPTVCSPEMELYSLLIHR 1107


>gi|254785006|ref|YP_003072434.1| UvrD/REP DNA helicase II [Teredinibacter turnerae T7901]
 gi|237686397|gb|ACR13661.1| UvrD/REP DNA helicase II [Teredinibacter turnerae T7901]
          Length = 1138

 Score =  128 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 116/907 (12%), Positives = 243/907 (26%), Gaps = 115/907 (12%)

Query: 101  PPVSNIQRLLELARLI----LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156
            P    + + L L  L+      WR  +         +                + L  +I
Sbjct: 276  PDADALPQWLGLIELVFTQKQEWRKSVTVAQGFPPGKGADKKACDARK-----QQLKALI 330

Query: 157  DIIE---TEEKKWEDLHALKNEKYGM-WWLLAADF---LKIASKYWTERLVELNASSPVG 209
              ++     + +  D+  L         W L       L + S   T    ELN      
Sbjct: 331  AELQSVPGLDDQLADILQLPAADVDDSQWQLLDALFTVLPMLSAQLTLVFKELNRVDFTE 390

Query: 210  YQIALMRAEAEHLM--------KGTKGPIIIAGSTGSIPATARLMSTVANHP---NGAIV 258
              +A  RA                    I++     +  A   L++ +       +G  +
Sbjct: 391  VSLAARRALGSAESPSQLAMKMDYRLSHILVDEFQDTSAAQVELLNQLTAGWVPDDGRTL 450

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
                D       +         + +        P   L +L      +   V  +  V  
Sbjct: 451  FCVGDAMQSIYAFRGANVGLF-LNAREQGLENVPLRCL-RLTANFRSQAGVVHWVNKVFA 508

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            + +      S   +    S + N ++  + +                  RE A  + I L
Sbjct: 509  QSFPAQHSASHGAVAYAASTVVNPELPGDAVRLHGFIDDG------AGAREAAQVLDIIL 562

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                ++   K A++   R+    +   L   G+        PL+ T     L SL  A+ 
Sbjct: 563  SARAEQPDAKIAVLVRSRSALAAIVPALQGAGLRYRAVDLEPLAETPAVQDLLSLTRALL 622

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
               D +A   +++ P       +                                     
Sbjct: 623  HPADRVAWLAVLRAPWCGLALTDLDALC-------------------------------- 650

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
             +              E       L +     +  ++   +  +      +   W +   
Sbjct: 651  -RPQESKLVPTVLEQCEYALADNCLSESGAARLARVLPLLSAASEQRLRKTFRAWVE--G 707

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              L            +L        L   +           A+ +    ++   ++    
Sbjct: 708  CWLALGGGASLPGAASLENARMFFRLLEKWEY---------ASDLPAYRVLANAVNQLYA 758

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF---LSRVMQSDLNLK 675
             P  E   +L ++   +S+ L FD +I+ GL +    ++     +   L+R  +S L + 
Sbjct: 759  APDPEADDSLQLMTVHKSKGLQFDVVIVPGLAKRGNSRSDDLMLWQERLNRDGESQLLMA 818

Query: 676  TAEKYIGQAAHDFEMANGTR-------------HLIYTRSLRENNIPTIASRWLQRLLVL 722
               +  G   H                      ++  TR+ +  ++    +   +    L
Sbjct: 819  PLTRASGGDRHANYQHLAAEAGKKMDLETCRLLYVACTRARQRLHLCFATAENSKNPQEL 878

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ----- 777
                    L    Q  +   ++      +P        PPL+     ++   +++     
Sbjct: 879  RAPSSSSMLASIWQAVVLQVQRYPAPEIEPSATESWVAPPLQRFVAHWTPPLVERENLLL 938

Query: 778  -LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
              I       A+   +L++     +       GTL H  +  + ++ +   +    H   
Sbjct: 939  GFIPPYDYDEAQNRPELEWQSVANRA--SRHLGTLVHRYLQIISEQGLEHWSRTRVHACA 996

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIES 893
              + +   +  + P +         +     L+ E       +            +   S
Sbjct: 997  PAMAAGLRELGVAPALVPQLTERAGRHLARILDDERGRAILSNDYRFHASEYSLTLVTRS 1056

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ-------LSLEAAALKA 946
                L    DR+    +G   I DYKT +  + E        Q       + L  AAL  
Sbjct: 1057 GPQQL--VVDRVYTDAAGVTWIVDYKTAEPAEHEALDAFFRSQQELYQPKMRLYRAALLQ 1114

Query: 947  GSFSQID 953
              FSQ+ 
Sbjct: 1115 AGFSQVR 1121


>gi|296532163|ref|ZP_06894923.1| inactivated superfamily I helicase [Roseomonas cervicalis ATCC 49957]
 gi|296267511|gb|EFH13376.1| inactivated superfamily I helicase [Roseomonas cervicalis ATCC 49957]
          Length = 191

 Score =  128 bits (320), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 5/193 (2%)

Query: 848  LPPHIDIIWRHLFHKISHSFLEHE--EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
              P +   WR    +I    +  E   +    I +    +P  + I    + L   ADR+
Sbjct: 1    ARPGLLAFWRPRLARIGGFVVAQEEAAQQGRRIRRRHAELPGHLDIAGRRVKLKVRADRL 60

Query: 906  DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL 965
            D L  G + + DYKTG  P  +       PQ+ LEAA  +AG F  I    V+ L + RL
Sbjct: 61   DELADGTIALIDYKTGTPPTGKEMTDGRAPQMPLEAAIAEAGGFQGIARAPVSGLAHWRL 120

Query: 966  KQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
                    +   K       L   +L+    +V     G + FI+      +   + E+D
Sbjct: 121  TGGGTPGEVKPVKG--DPGTLGADALEQTTALVQGFLLGHRRFIARPH-PRRRPQRGEHD 177

Query: 1026 HLARVAEWREEYD 1038
            HLAR+AEW    D
Sbjct: 178  HLARIAEWGTAED 190


>gi|121635356|ref|YP_975601.1| exodeoxyribonuclease V [Neisseria meningitidis FAM18]
 gi|120867062|emb|CAM10826.1| exodeoxyribonuclease V [Neisseria meningitidis FAM18]
 gi|325132791|gb|EGC55471.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           M6190]
          Length = 1069

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 101/857 (11%), Positives = 221/857 (25%), Gaps = 57/857 (6%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIIVQSQGMRRYLNTCLARDLGVAANLS---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W             W  R ++    S         +  A
Sbjct: 146 RPQWIDAWQQGRRLGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N  +    + ++      + ++ A +   E   +   L   L E+        A++T  
Sbjct: 311 QNLKMPSENVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPH 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L+ L + +    +   +  L
Sbjct: 371 IESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D        +        +
Sbjct: 431 LETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAVERMILGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +       +    L T            +I +W       L+ 
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAALLETLSDIVRIWRQPATIGEWVARCRDLLET 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +   E     ++   E         +++ +    +       I  I R +D E+      
Sbjct: 551 LFQAEADDQKSVQNLENEWVKWQAETELAQFSGQLP--QQTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                E     R  L  +   R+   +     S  L  L+           ++  Q +++
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIE 724

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                        Y +           RT   + + Q    P   + + +   + +    
Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYATALGQTPEPPQPFFDQPVENAEPVAEIG 781

Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
           +D    +    + N +   +++++  + P     + +  +     E              
Sbjct: 782 QD----EFIRFWRNPVKVWLQQQLAWSEP----HIGEAWEPAEPFEPQHADQIAETYIEA 833

Query: 861 HKISHSFLEHEEKIQSS 877
            +    F +   +I + 
Sbjct: 834 RREGRDFAQTAARIGAE 850


>gi|326771897|ref|ZP_08231182.1| helicase, UvrD/Rep family [Actinomyces viscosus C505]
 gi|326638030|gb|EGE38931.1| helicase, UvrD/Rep family [Actinomyces viscosus C505]
          Length = 1206

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 112/1075 (10%), Positives = 273/1075 (25%), Gaps = 199/1075 (18%)

Query: 46   SVTIYVPTKRAIQELR---SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
               +  PT+     LR   +  +        +   +++   +     T  L +     PP
Sbjct: 64   DAVLLAPTRARADWLRGRAAHLLREGHGDGVV--RVRTPAALALTILTTSLTMRPAPLPP 121

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
               +               +   +   +   +   LP     +      L +++      
Sbjct: 122  PVLLAG-----------AEEDSALASMVSTVTWPGLPAEATGSRAFRSELRNLLARAGEL 170

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLK---IASKYWTERLVELNASSPVGYQIALMRAEA 219
                +DL  L        W  A+  L+      +   ER  +         Q   + A +
Sbjct: 171  GISADDLADLGRRLNVPIWGPASQLLRTWDAQGRASAERRAQTRKMDTARLQDRAVEALS 230

Query: 220  EH------LMKGTKGPIIIAGSTGSIPATARLMSTVAN---HPNGAIVLPGLDCHIPTAI 270
                      +     +++        ATARL++ +A      + A ++   D  +    
Sbjct: 231  SWGSDAVTAPRPVPDLVLVDDYQDCTAATARLLTALATPDPDGHRAQIVVLGDPDVAVET 290

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
            +   T              +    +  +L             + + S  +        + 
Sbjct: 291  FRGGTPSLL----VAAEDHSGLAATRLRLTTCYRGNPAIAAVIRDQSARVPVTGTTAHRQ 346

Query: 331  FLPPDTSDMRNTDILENKIPNIQK--CFSDVALIEADNEREEAISIAIALRMSLDENK-- 386
                  S  R++    +   + ++    + V +I A +  +E   +A ALR+    +   
Sbjct: 347  TTLAPRSPARSSAGPSSGASDAERPQAVAGVEVILASSAWQEHAHVARALRLEHVHHGTA 406

Query: 387  -KKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHSSILTSLLNAI------- 437
              + A+I      A  +  +L R G+ +   +  + L     ++ L  ++ A        
Sbjct: 407  WSQMAVIVRSAADAETLARDLRRRGVPLASRTPAVLLRAEPAAAALLDIVRAAIRDQLGG 466

Query: 438  -FKLNDFMAIATLVKHPLAK---------------FGFPEKYLSRAKNALELVALRGNKN 481
              +     A   L+  PL                         + A    E     G   
Sbjct: 467  HGEPPQRDAAINLLTSPLVGLTTMDLRRLRRRLRQAQPAATPHASAAEPCEPSTSTGPAP 526

Query: 482  SY-----DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT---- 532
                         + +L  +A  +  +             +   +L+   IL+ +     
Sbjct: 527  VPAVGTGPRTGGDAALLALLADPEQASGFARSLDGQPLSAQAERLLIAARILEALRSAIG 586

Query: 533  --PLVTYKTNKNSTCGNLSISDWTKLTV--TCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
              P    +  +       + S+  +       L +              + +  T     
Sbjct: 587  QTPAEAPRDVEALLWAAWNASERAEAWRATALLPSASSVRTLLSEAAEHDLDVVTTLFKR 646

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            +++       +  +    ++   ++  ++V P+  +   + ++         ++ +++ G
Sbjct: 647  AEVWAERHPGQDASSFLAELDAEVLPSDSVAPQGRRPEGVAVMTPAGCAGQEWELVVVVG 706

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDL----------------------NLKTAEKYIGQAAH 686
            L    WP    ++      +  D                           A+    +   
Sbjct: 707  LERDRWPDLRLRDSLTRTGLLVDAVTGRLTTDTVAPGEGTSGTGAVAAARAQVRADERRM 766

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG---------------------- 724
                 +     +   +  +       S +L  +    G                      
Sbjct: 767  LIMALSRASRRLLLTATAD--AEHAPSPFLTEIARSAGIALTDADGAPLLTPDTGDLTLR 824

Query: 725  ---------------TDFFDNLKKRGQCYLDWTRKLDY-------TTKQPHYKRP--KPF 760
                               D  ++RG+  +D    L                  P     
Sbjct: 825  GLVGELRHAAICGNLEMATDAERRRGRAAVDLLADLARQGVPGADPATWIGATGPTSSAP 884

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
                 +    S S+++ L   P   +  R              D    G+L H +     
Sbjct: 885  LIAAGERIRVSPSDVEGLAACPLKWFLTRSGGSAP------ASDAQALGSLVHAVAERAE 938

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLEHEEKIQSSIE 879
            K+ +          +++  +        P      +       +      +     +   
Sbjct: 939  KEHLRGP------ALREAFEERLTDLGYPATWQGGLAADRARAMIERLDAYLADCDALGV 992

Query: 880  KIFVNIPAKMAIESI------------------------GIHLTGFADRIDL-------- 907
            +  V  P +  ++                           + ++G  DR++         
Sbjct: 993  RADVEQPVRADVDIPLSVLSPAVRQRAGLRIPTKGGNAVPVTISGRIDRLEHVGGLLGGE 1052

Query: 908  -------LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
                    ++G V + D KTG     +  Q+   PQL+    AL +     +   
Sbjct: 1053 SEDSAGPDRNGTVRVIDLKTGQR-VPKDVQRH--PQLATYRLALSSQGLDVVGGA 1104


>gi|262203378|ref|YP_003274586.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
 gi|262086725|gb|ACY22693.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
          Length = 1119

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 124/1073 (11%), Positives = 264/1073 (24%), Gaps = 168/1073 (15%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLL--------- 94
             +     T++A  EL +           S  L      G +      AD           
Sbjct: 62   EILGLTFTRKAASELGARIRRRLSMLSGSPALRSWDPEGTLAARLRGADPEVSTYHAYAG 121

Query: 95   ---LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
                 Y L  PV     LL    L  +  + + +   +L+  +           + L   
Sbjct: 122  RLISDYGLLLPVEPNSTLLSETELWQLAFSLVANWPDELH--TTKVPASVTEAVLKLYGE 179

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA---------------DFLKIASKYWT 196
            +A+ +  I+   +   DL+ +                              L        
Sbjct: 180  MAEHLVDIDDLARAGSDLYEMIPTLPKGPKQRGGPNQALLKIRDVIDERRELIPMVTALA 239

Query: 197  ERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
            E + E +A           R            +     +++     +  +   L+ST+  
Sbjct: 240  EAMREQSALDFGSQMSLAARLVVGNPEVVAAERKAFRAVLLDEYQDTGHSQRVLLSTLFG 299

Query: 252  HPNG---AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
              +      V    D       W   +  +    + +   +        +LL        
Sbjct: 300  GTSRDAPVAVTAVGDPIQSIYGWRGASAANLPRFAGDFPAADGSPADRRELLTSWRNAEV 359

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
             ++   +VS E+  R + +S                     P+     + +AL E   + 
Sbjct: 360  VLRLANHVSAELRRRGIPVSVLRAR----------------PDAPSGSAHIALTETVVDE 403

Query: 369  EE--AISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
             E  A +I    R + +  +    +A++      +  +  EL R GI  ++     L   
Sbjct: 404  REWIADAIETRWRAAENDGQAPPTTAILVRRNEDSAPLAAELERRGIPAEVVGIGGLLHV 463

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY--LSRAKNALELVALRGNKNS 482
               + + S L  +       A   L+     + G  +      RA               
Sbjct: 464  PEVTDVVSTLRLMADPMAGTAAMRLLTGARWRLGAADLAALWRRAAELAAEEIAAAGGAV 523

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                 L + +   + T+  +            +    +      I      L + +    
Sbjct: 524  TSREQLDAALDAVLPTEVVDRAGIADAVVDPGDPSRYSPDGYARIRAFGAQLESLRR--R 581

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                   +    + T+       +   R    +   E     +   ++  +         
Sbjct: 582  IGQPLPELVADVENTIGVGVEAQIRARRMRGAITGREHLDAFAEYVTRYADRRGADLPGL 641

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            + +++    +  G            + IL    ++ L +D + +  L   ++P   A+  
Sbjct: 642  LAFLETAETIEKGLEPGRIEVAEQRVQILTVHAAKGLEWDVVAIPHLCHNIFPGGKAETT 701

Query: 663  FLSRVMQSDLNLK------------------------------------------TAEKY 680
            +L    +    L+                                             + 
Sbjct: 702  WLGSARELPGELRGDLAIAAEQGSAHPEGYPVLDLHAVTDRKELEDTIATYKEAIADRRL 761

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIA---SRWLQRLLVLGGTDFFDNLKKRGQC 737
                   +      RH +   +   +         S +   LL        D   + G  
Sbjct: 762  EEDRRLLYVALTRARHDLLISAHHWSESGDKPRGGSEFFTELLTAISDAVDDPTVESGGL 821

Query: 738  YLD-WTRKLDYTTKQPHYKR--PKPFPPLEAQPRTYSFSEIKQL------INDPYAVYAR 788
             +D    + D     P  +R    P+P      R         L        D  A++  
Sbjct: 822  VVDVLAPEPDDGAPNPLAERVLAAPWPADPLAGRRDGVRAAADLVLAEIAARDAPALFDT 881

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI------------------NKNTPE 830
                         D        +   ++      +                   + +  E
Sbjct: 882  DGAPESDGDPDLSDEIAAWEAEVSALLVEREASNQALVEVELPTHLSVSQLVELDADEAE 941

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHL--------------------------FHKIS 864
                +++                  W                                + 
Sbjct: 942  FARRLRRPTPFRPNPTARRGTAFHAWVERWFGATRLLDIDELPGAADATATPDADLDALR 1001

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924
             +FL      +S      V +P +  I   GI + G  D +     G   + D+KTG  P
Sbjct: 1002 DAFLASPWANRS---PSEVEVPFETVIA--GIVVRGRIDAVFADPDGGWTVIDWKTGVVP 1056

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
            +    + L   QL+    A    +   +D  + A   Y+R       D + ++
Sbjct: 1057 EPARRESLFI-QLAAYRIAWAQLAGVPVDRVR-AAFHYVRSGHTLAADELPDE 1107


>gi|261392060|emb|CAX49553.1| exodeoxyribonuclease V gamma chain [Neisseria meningitidis 8013]
          Length = 1069

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 103/882 (11%), Positives = 225/882 (25%), Gaps = 63/882 (7%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194
           L    +    LA  LADI D       +W D               W             
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           W  R ++    S         +               + G +   P   +L+  ++ H +
Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             +             W  + E +  +        T   + L   L        D     
Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            +  E          + L    +D++N  +    + ++      + ++ A +   E   +
Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVNTGDGSIRIVSAHSPLRELQIL 345

Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424
              L   L E+        A++T +          +          +   +S        
Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNK 480
                L+ L + +    +   +  L++             +  L     A   V    + 
Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDG 465

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLVTYK 538
                 D        +        +P   + + ++       +       +    L T  
Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLETLS 525

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                     +I +W       L+ +   E     ++   E         +++ +    +
Sbjct: 526 DIVRIWRQPATIGEWVARCRDLLETLFQAEADDQKSVQNLENEWVKWQAETELAQFSGQL 585

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                  I  I R +D E+          +     +  R L F  + L GLN+G +P+NT
Sbjct: 586 P--QQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715
               F           +             E     R  L  +   R+   +     S  
Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
           L  L+           ++  Q +++             Y +           RT   + +
Sbjct: 700 LGELIDTVAAMAGIGSRQLAQNWIEQHPL---QAFSRRYFQEGGRSDGIFGTRTDYATAL 756

Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            Q    P   + + +   + +    +D    +    + N +   +++++  + P     +
Sbjct: 757 GQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP----HI 808

Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +  +     E               +    F +   +I + 
Sbjct: 809 GEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAE 850


>gi|227541922|ref|ZP_03971971.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182365|gb|EEI63337.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 1025

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 129/1081 (11%), Positives = 299/1081 (27%), Gaps = 182/1081 (16%)

Query: 24   ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF----------IEITGKKST 73
            A +   + +  R   L       + I   +KR+                   E       
Sbjct: 45   AGVTSLIRDAARARLLAGTDPDRLLIVTHSKRSALAFEEALWDDLVASRSDEENAAPYVA 104

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE 133
               + +S+  +         + +    P      RL+  A    + R  L    +     
Sbjct: 105  ESKLAQSVHSLAFSIVHYAAIANNVPAP------RLMTGAEQDAVIRELLKGNQEAGGEY 158

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193
             P    +   + +  A+ L D +       K   D+  L  ++    W+ A  FL+  + 
Sbjct: 159  WPAER-VEALDYVGFARGLRDFLLRAGERGKSAADVKKLGEQENKPLWVAAGAFLEEYTA 217

Query: 194  YWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMST 248
                 L +++  +     I  +RA  ++       +     + +  +    P + +L+  
Sbjct: 218  VMN--LQQMHHLNASELLITAVRALEDNPALLEKMRNRYDFLAVDNAQHLDPLSQKLVEM 275

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +  H    I + G + +     +           S  T                      
Sbjct: 276  IGEHTP--IFVVGGNTNGLVYSFRGANTDLVEDKSGKTVI-------------------- 313

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                              + +SF  P    +  T    +    I +   +V LI      
Sbjct: 314  -----------------TLEQSFRRPSDKRIIYTHTAGDNFSVIARELREVHLI------ 350

Query: 369  EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHS 427
                          D   +   +IT   +    ++  L    + +   S  + L      
Sbjct: 351  -------------RDIPWEDMVVITRSLSQIPALQRALATADVPVHIDSTDVVLVEQSIV 397

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
              +   ++ +        I  L   P+         L R +                   
Sbjct: 398  QAMLQAVDIVMGNGTEEDIIELATGPIGG--ADPITLRRIQRE----------------- 438

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                 +  +             +RL E+ + +   L   I      +    + +      
Sbjct: 439  -----IGELGPVVRGAARVAEDARLGEQAESVLAHLSAVIQTGREAVERGDSLELILWSI 493

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
               +  +   +           +   +L    E   ++  + + ++       +   +I+
Sbjct: 494  WEATGLSTSKMYTALRGVPAAAQANRDLNAMMELFDVAGDYVERVKQP-----SLEGFIE 548

Query: 608  IITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             +T       V+ +   +   + +L    +    ++T+IL G ++  WP          +
Sbjct: 549  HLTSQDLPTGVRERQVVAPKAVALLTAHGAIDDEWNTVILAGADDDSWPSLGLTGTIFDQ 608

Query: 667  VMQSDLNLK----------TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT---IAS 713
                DL  +            E+   +      + +     +   ++      +     S
Sbjct: 609  EELVDLIDENVDPDAYIDRLRERLHEEQRLFSLVTSRATDTLVITAINPAEEDSPLPQPS 668

Query: 714  RWLQRL------------------------------LVLGGTDFFDNLKKRGQCYLDWTR 743
            R++++L                                L   D  D  K+     L    
Sbjct: 669  RFVRKLEEDETFSVSTVVETDELAVKSSRPFIAELRRALTSADSSDEEKEEAADLLAMLA 728

Query: 744  -----KLDYTTKQPHYKRPKPFPPLEAQPRT-YSFSEIKQLINDPYAVYARRILKLDFIP 797
                 + D T            P  E +     S S+++  +  P  +    +       
Sbjct: 729  DAGFSEADPTNWWGLAGPTDAQPLREPRQPATLSPSQVESGLQCPLKMVLNSV------- 781

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
               +       G L H +    +  + ++ T +    +  ++D++     +PP  +    
Sbjct: 782  TPTESSSALREGNLLHALAEASVTLQQDEETWKEAEQL--VLDAYLSSRTVPPWKEKADE 839

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGIHLTGFADRIDLLKSGFV 913
              F ++ ++ +     +   +  + V IP  +A+    +   IH+ G  DR+     G +
Sbjct: 840  EEFVEVMNATVSKMTNLAGDL--VGVEIPMDVAVGQLDDGSPIHIKGRLDRVHRDSEGRM 897

Query: 914  DITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR-LKQKFKI 971
             + D KTG   P  + A+    PQ+++    +      +     V +      L+     
Sbjct: 898  KVYDLKTGRSAPTYQEAESH--PQMAVYQLGINHSRIQENPLEFVTDDGSGGALQSGGAE 955

Query: 972  DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031
                   KK S   L+E + + L++ +  L +          L  K      Y  +  + 
Sbjct: 956  LVYPRSTKKPSQKPLTEDNARILMDNLRQLVHHTSGST-VPALPNKHCGSCAYRIICPIT 1014

Query: 1032 E 1032
            E
Sbjct: 1015 E 1015


>gi|296272006|ref|YP_003654637.1| hypothetical protein Arnit_0466 [Arcobacter nitrofigilis DSM 7299]
 gi|296096181|gb|ADG92131.1| conserved hypothetical protein [Arcobacter nitrofigilis DSM 7299]
          Length = 786

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 131/335 (39%), Gaps = 25/335 (7%)

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           S  + ++G LE+R + F+ +I+   NE   PK++ K+ FLS +++  + L T +      
Sbjct: 415 SGLITVMGLLETRAVEFEAVIICDFNENYIPKSSIKDKFLSSIIKKRVKLPTQKDRENLQ 474

Query: 685 AHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            + +       ++L  + +  E       SR+   L          + + +    L   +
Sbjct: 475 KYYYYRLMNKAKNLYISYTQNETM---QVSRFADELFKDEINPSTKDKQYK--QILYKNK 529

Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
            +++  +   Y+       ++   + +S + +K+ +      Y   I K+         P
Sbjct: 530 SIEHFNETIEYE-------IDLSKQEWSATSLKKYLECKRKYYLEYICKIKEHN-ISLKP 581

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
              + G++ H  +    K        ++ ++  ++I S FEK+       ++ + +F + 
Sbjct: 582 KGFELGSMVHKTLESAYKSF------QVQNINYELIKSLFEKQMNENPFLLLDKEIFLRK 635

Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-- 921
            + F+E E K         + I      +  GI L G  DRID        + DYKT   
Sbjct: 636 LNIFVEFENKRFEDKNLSVLEIEKDFKFDYNGIVLKGSIDRIDKQDD-KYLLIDYKTSAS 694

Query: 922 -DNPKKETAQKLIDPQLSLEAAA-LKAGSFSQIDC 954
                 +T +  +D QL     A L+   + +I  
Sbjct: 695 LKIDSIKTYENSVDFQLEFYYLACLELFGYDKIKA 729



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 51/162 (31%), Gaps = 25/162 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + + I  PT RA   +R      +  ++ +LP   ++ + +++  +            + 
Sbjct: 5   SKILIVFPTSRA---IRESIKRRS-NENLLLPSYLTIDEFLKKSISIKNKKY------ID 54

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
             QR L L                D+   S L +  +  + +  +  L      +  E+ 
Sbjct: 55  EEQRFLYL------------KNASDIKNLSKLGISNNFTSFLKQSDYLFRFFGELAAEKV 102

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             + +  +   +   ++      LK     +   L   N   
Sbjct: 103 SIDSIDEVDTYE---YYKEHISILKKIYNNYVTILDTNNVVD 141


>gi|269793284|ref|YP_003318188.1| hypothetical protein Taci_1692 [Thermanaerovibrio acidaminovorans DSM
            6589]
 gi|269100919|gb|ACZ19906.1| hypothetical protein Taci_1692 [Thermanaerovibrio acidaminovorans DSM
            6589]
          Length = 972

 Score =  127 bits (319), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 118/844 (13%), Positives = 236/844 (27%), Gaps = 128/844 (15%)

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
              + + +   +   +  +        TH Q +L +LL  L  +   +    N+       
Sbjct: 182  PTMTSRLLRLMGSPNLRLALVGFLSFTHGQLNLVRLLRELGCELCLLIPWVNLEGVPDCA 241

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
              +   + + P +       +L     +  +  +          RE A+  +   R+   
Sbjct: 242  LQMGIDAAMAPHSPPPSCQALLGLDPHHQYEALA----------RELALLGSPHCRLDFS 291

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                + A+   + +L RRV+ ELTR  +   I  G  LS +L   +L   LNA      F
Sbjct: 292  GPLDQVAISVPEEDL-RRVRWELTRHDVPFWIQGGTSLSESLAFRVLMLALNAARSRWAF 350

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
                 L+            +  + ++ +     RG                         
Sbjct: 351  RPTLRLLS---------ALHPRQVRSEVISTRPRGR------------------------ 377

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITP----LVTYKTNKNSTCGNLSISDWTKLTVT 559
                W   L    +E    +       + P                  + +    +    
Sbjct: 378  --DQWLEALKGPLREAFESISRRADSFLEPPGLTPGEAMDQAQGIMEAVDLFQLARGL-Q 434

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
               ++          L   ++ +   S    + E     + +  E I  +          
Sbjct: 435  DRPHMDWTIRAMGSALEEAQKRRFALSRGQDLGEAFRE-RLDGQEAIQFLAAWGASSYTA 493

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT--- 676
             +      + +       L +   LIL G ++  WP    ++  L    +  LN      
Sbjct: 494  QEQPLQGAVRVYRGNPPVLADHRCLILCGADQSRWPGKLRESATLGEESRRRLNRTDWAS 553

Query: 677  -----------AEKYIGQAAHDFEMANGTRH-LIYTRSLRE-NNIPTIASRWLQRLLVLG 723
                        E+   + A  F +A   R  L+ +R + +    PT  S +   L  +G
Sbjct: 554  QGLNPTHLVEIHERRAEKEALFFRLALTARDLLVLSRPVNDREGRPTSKSPFEGSLHRVG 613

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIKQLIN 780
              +                R +         +R  P   L  +   P     S++     
Sbjct: 614  IREPVPMNPTPSLLDSPPIRGIHLENPWDPPRRTGPLELLADRVQLPTKVRLSQLDTFSQ 673

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             P+A     IL+L      +         TL H+ +  L +      TP +   + + ++
Sbjct: 674  CPFAFACEAILELKIQD--RDPASSVSLSTLAHHGLQLLGEALSKGATPVVERCLLEAME 731

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI---GIH 897
                  N P  +    R L   +    L+     +  ++   ++   ++ +  I    + 
Sbjct: 732  GSGVDLNAPRFMRQ--RALLSDLLDRCLQWLYARREGLKDRLIDTLWEVELPPIRRTNLV 789

Query: 898  LTGFADRID--LLKSGFV--DITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ-- 951
             +G AD +D   L+   V   I D+K G              Q    + A++        
Sbjct: 790  TSGRADMVDLIRLEGQQVGAFIVDFKWG----NSDGYSH-SLQPGAYSLAIQESHVLGDR 844

Query: 952  ---------------------IDCRKVANLF-----------YIRLKQKFKIDCITNDKK 979
                                    ++V               Y  +    K +      +
Sbjct: 845  VDVQVLGCGIVSFREMLNQRRFRRKEVGRGSHGGRKGFLENCYWLIPNGAKAEVDGKKGR 904

Query: 980  KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE---WREE 1036
                D   + + + L E+ + L  G            K   + +Y  L R  E   W   
Sbjct: 905  LGDLDLALKLAGRALDELDSALGKGVFA----ADYGSKRCDRCQYQGLCRRLEEGRWLSR 960

Query: 1037 YDIS 1040
             D+S
Sbjct: 961  EDLS 964


>gi|288553536|ref|YP_003425471.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4]
 gi|288544696|gb|ADC48579.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4]
          Length = 1135

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 87/948 (9%), Positives = 235/948 (24%), Gaps = 98/948 (10%)

Query: 95   LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES-------PLSLPISPANAIW 147
             + +L P   + +    L +      ++L +        S        L   +       
Sbjct: 223  AALDLIPQFPSAEG---LTKAQAGHVDRLQEAFLSPPSPSGPNEYMDWLIGVMPKRTDKK 279

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA------DFLKIASKYWTERLVE 201
              + +  +  + E   K  +D       +  +    +       D L      +      
Sbjct: 280  WQEAIPALFQLFEEHWKPLKDDWKAVGGEVEIDEAASLLLGRFIDLLCDFHLAYKREKEL 339

Query: 202  LNASSPVGYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
                     Q   +       ++         +++     +      ++  +    N + 
Sbjct: 340  RGVVDFSDLQQKAVSLLENKEIQEACQKQFRHMLVDEFQDTNRLQLEMLERI----NPSY 395

Query: 258  VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
                 D       +     +  N    +     + +         ++I     K + +  
Sbjct: 396  RFIVGDTKQSIYRFRGANVRLMNELEQDAVEQENAEAI------EMNINYRTCKPIIDGV 449

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
            N ++  +M    +          + +    +    Q     +   E D E     ++A  
Sbjct: 450  NALFQSAMTDHITESYQTRYAALSANREAEQPDQKQMELLLLNKEETDEEAGSYEALAHR 509

Query: 378  LRM--------------SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
            +                      K  A++   R    +++   ++  I   +  GI    
Sbjct: 510  INEMITSQQPRVFKGESWQAPAFKDMAVLIPARTDLLKLERAFSKQNIPYTVYGGIGFYE 569

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE----KYLSRAKNALELVALRGN 479
                    +LL  + +  + + + +L++ PL      +         A  +      + +
Sbjct: 570  RQEIIDFLTLLRWMNRPFEDVYVLSLLRSPLIGLTMNDFVTIAKQKEATQSFADYLYQLS 629

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK-ELAVLLVDHILQCITPLVTYK 538
            ++        S  L           +  W                 D +++    + +  
Sbjct: 630  ESMPQTGLADSSDLPAQQILDAALKLKEWLLNYVPFSIKGSPGETFDRMIKETGLVHSLL 689

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
               N      ++    ++          +    +       + +  + +     +  + +
Sbjct: 690  IQSNGLQKVKNVEKLIQMIEQSHLRSLEEIIHFIDERMALNDKEGEAEMERTEGDAVNIM 749

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
              +A + ++     +                + G   S   +    I+  L E       
Sbjct: 750  TIHASKGLEFPIVYLPQLER----------SVQGDKGSVRFDAKLGIVWSLEEETDNLEA 799

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
                 ++   +        E         +  A   +          +         ++ 
Sbjct: 800  RPKKLVTPGFELVKEAAGLESEEESKRLFYVAATRAKD-YLVMIGNGDGAKKSWLHLIEE 858

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                G  + +  +       L    +           + +            S SEI   
Sbjct: 859  ARDCGPLEDYITVVNEISEQLPHHAENHLYKGTELAAKKEVL-------YPLSVSEIMTF 911

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDR-----------TDRGTLFHNIITELIKKRINKN 827
            I+ P   Y + +L ++     + D D               GTL H        +     
Sbjct: 912  IHQPEEYYEKYVLGVNESRRLRSDADADQETRVQQVDPAVVGTLVHRACE---LRDYGFG 968

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
              E        +D   +  ++    +     L           E +       +      
Sbjct: 969  AQEAVTEAMNYVDELNDTASVKVSYEQEVSELMETY------SEAQQTELGTPVENEWSF 1022

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKA 946
               I    +   G  D++ + + G + I D+KT            + D QL L   A + 
Sbjct: 1023 ATEIAGAEV--IGEIDKV-VERDGCLHIIDFKTNRIKRSGSEWLAVYDVQLYLYKMAYEQ 1079

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
                      ++ +    L+ K K     + +++       +K+++ L
Sbjct: 1080 E-----TGHTISTMSLYVLRDKEKPLHTIHVEEEKEVS--IKKAIQRL 1120


>gi|296270932|ref|YP_003653564.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
 gi|296093719|gb|ADG89671.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
          Length = 1128

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 98/1006 (9%), Positives = 239/1006 (23%), Gaps = 140/1006 (13%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKST--ILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
             V     T +A  EL     +  G+ +   ++P      +     + A     +  +   
Sbjct: 72   QVLGLTFTNKAAAELAERVRKRLGQLAASGLIPPELLDHEPAVSTYHAYAARLFTDHALR 131

Query: 104  SNIQRLLELARLILIW--RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DI 158
              ++  + LA   + W    ++         +  L+ P   A  + LA  LA+ +   D 
Sbjct: 132  DGLEPAMRLATPAVAWQLAAQVVGQYDGPMDKVDLTPPSVTAAVLELAGELAEHLCEPDD 191

Query: 159  IETEEKKWEDLHALKNEKYGM------WWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
            +    +   D  A    K               + L    + +     E           
Sbjct: 192  VRGFGRWLRDRFAELPGKPIAAQRKVIERQEVREQLLPLVEAYQRLKRERGLLDHGDQVA 251

Query: 213  ALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
               R    H     + +G    +++     +  A   L+  +     G  V    D    
Sbjct: 252  LAARIALRHPEVGAVERGRYAVVLLDEYQDTSHAQLELLRALYG--GGHPVTAVGDPCQS 309

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQY-------SLAKLLDFLDIKREDVKRLGN----- 315
               W   +  +      +    T           S       L +     + L       
Sbjct: 310  IYGWRGASAGNLLRFPGHFPTRTGEPAPVKCLSVSFRNGERVLGVAARIQEPLRAEAREV 369

Query: 316  ----VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                      GR  V+       +        +++  +       +  +L  A     E 
Sbjct: 370  PVLTPGPNRRGRGRVVCAFHRTAEEEAEWIAGLVDGLLRGEGAAAAGSSLGVAVPR--EG 427

Query: 372  ISIAIALRMSLDENKKKS------ALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
                +       +  + +      A++   R+    ++  L   GI +++     L    
Sbjct: 428  APDGLPWPEGERDPDRPAVSPKDIAILVRKRSQFAALRRALEDRGIPVEVVGLGGLLMVP 487

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-RAKNALELVALRGNKNSYD 484
              + + + L A++      A+  L+  P  + G  +          L      G +    
Sbjct: 488  EVADIVATLRALYDPTAGDALLRLLAGPRWRIGPADLKTLGDLARELTKELREGRREGDP 547

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
            + +  + + +      +       +          A   +  +   +  L  +       
Sbjct: 548  LENAVAELAEEQGNLIDALDELPDRPDWLARFSPRARERLPALALELRALRAHAGRPLPE 607

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                 I +  +     ++      +        +      +    +  +         ++
Sbjct: 608  L----IGEVERRLRLDIEVAAKGGNPLAARADLDAFLDIAARFAGESEDGTLGAFLAYLK 663

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT------ 658
              +     +         E   T+ ++    ++ L +  +I+ GL++    K        
Sbjct: 664  AAETEEFGLKTAEAGQVGET-DTVKLMTVHMAKGLEWPVVIVPGLSQATTQKGWVTKGSL 722

Query: 659  -----------------------------AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                                          + P L R   +        + + +      
Sbjct: 723  FPAAPVTNPRWTENPRKLPYPLRGDRTDLPRLPSLERDALTAFEEDCRTRDLLEERRLAY 782

Query: 690  MANGTRHLIYTRS---LRENNIPTIASRWLQRLLVLG----------------------- 723
            +A    H +   S      ++ P   S +L+ +   G                       
Sbjct: 783  VAVTRAHYLLVASGFRWGTSSRPLEPSMFLEEIRAKGAEVARWWDGDEEENPLLADPPRA 842

Query: 724  -------------------GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
                                       +       D       T             P +
Sbjct: 843  DWPQVGVPDPVREGARLVEEALAARAEQDAAGAERDAAEAERDTAGAVFADPVGDLSPED 902

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF------KKDPDRTDRGTLFHNIITE 818
             +       + + L+ +    + R    ++               D           +  
Sbjct: 903  RERMRAWARDTELLLRERAEHHHRAGQVVELPDRLTVSSLVTLAADPVAFAQSVRRPLPR 962

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
                   + T     L  +        E+  P      +     ++      E    +  
Sbjct: 963  KPAPHARRGTAFHRWLETRWGQQRLLDESDLPGA-ADEQSGDADLAELQELFERSEWARR 1021

Query: 879  EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924
              +   +P +M I      + G  D +     G   + D++TG  P
Sbjct: 1022 TPVDQEVPFQMVIGDR--LVRGRMDAVFREGDG-YVVVDWRTGRRP 1064


>gi|332686493|ref|YP_004456267.1| ATP-dependent nuclease subunit B [Melissococcus plutonius ATCC 35311]
 gi|332370502|dbj|BAK21458.1| ATP-dependent nuclease, subunit B [Melissococcus plutonius ATCC
            35311]
          Length = 1202

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 115/979 (11%), Positives = 252/979 (25%), Gaps = 155/979 (15%)

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPISP-ANAIWLAKNLAD---IIDIIETEE 163
            +LL  A   +++R  L +  ++L                    + + D    ID ++T  
Sbjct: 90   KLLPEAGAAMLFRQVLLENEQELQIFQGEITKEGFIQQLFVFYQEIQDGNITIDELDTF- 148

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                 L  L          +    L +    + E+       +       ++    ++L 
Sbjct: 149  -----LTQLDKGAKEQELQIKLKDLALIFTKFEEKAKNYQFDT-----KKIVENLTKYLT 198

Query: 224  KGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                  +  +I+G          L+  +        +   LD     ++   +   +   
Sbjct: 199  NQNLSHVSFLISGFHQFTAKELELICLLIKKAGEVKISLPLDRSYTNSLPEPMDIFAETG 258

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            T           Y   +      +               Y  +             +   
Sbjct: 259  TLY---------YQFYQFARTNRVPLFTD----------YVVNESSLIPTTGICQLENYW 299

Query: 342  TDILENKIPNIQKCFSD--VALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396
                +   P +Q+   D  V + + +N +EE +S+A  +R  + E     K   LIT D 
Sbjct: 300  IAAQKQYFPKMQQQILDNCVQIWKGENVKEEILSVACEIRRLVAEEGYRYKDIQLITRDM 359

Query: 397  N-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
                  +K  L  + I I +     +        + S          +  I   ++  L 
Sbjct: 360  ACYENLLKPLLALYDIPIYLDHDQTMEQHPLVEWIQSFFAIYNYNYRYRDILRFLRTELF 419

Query: 456  KFGFPE---------KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                 +               +N +++         Y+                   H  
Sbjct: 420  FPKENQKWETIEQWQAACREWRNKVDITENVVLAYGYEGTYWSRKQDWSFIQYDFEEHKL 479

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI--SDWTKLTVTCLQNV 564
                ++ E+  E+   +  ++  C   L   K    +             K  +   +  
Sbjct: 480  ENTKQIEEDSNEIRQKVQKYLPVCFKKLKKAKNGLEAAKIFHHFLIESGVKYQMNQWRIQ 539

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
             ++          E+    L +L  + +E           + +I T  + G         
Sbjct: 540  AIEAGNLEEAKNHEQVWTALMTLLDEYVEIYKNEPFFFETFQEIFTSGLAGINYSRIPAT 599

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
               + +     +R      +   GL E  +PK       LS   +  ++L  A+      
Sbjct: 600  IDQVQVRLIDLTRAAAAKVIFAIGLTEEAFPKKIENKTLLSDEERQLIDLYLADDQFLAN 659

Query: 685  AH----------DFEMANGTRH-LIYTR-SLRENNIPTIASRWLQRLLVL---------- 722
            +            ++M       L  T    ++       S +++ +             
Sbjct: 660  STEKKIAQEPFIAYKMLVSATEKLYLTYHCTKDTKQEIKCSPYIRNIQQAFMLPIIEKRE 719

Query: 723  -GGTDFFDNLKKRGQCYLDWTRKLDY-----------------TTKQPHYKRPKPFPPLE 764
               TD           Y     +L                     ++   ++P+      
Sbjct: 720  GLPTDDEAISLTHIGTYPALIGELTRLKRQNQEIGEPVSGFWLAMEKALTRQPEISQTAS 779

Query: 765  AQPRTY------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                +                         S S+++   +  +  + +  L L       
Sbjct: 780  FVFSSLGYTNNPENLTETFAEALYGKHIYTSISQMEAFHHCQFQYFLQFGLNLKER--LL 837

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPP------- 850
                    G  FH  + +  K  I +N       +  +    D+        P       
Sbjct: 838  FQLTSAATGEFFHEALDQFFKLLIRQNKYLPDLTDEEVANFSDNVLTAVLDEPKFSILTS 897

Query: 851  -----HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIES 893
                 ++         K+  S+   ++  +S    +   I              ++A+E 
Sbjct: 898  SNRMNYLRYQLSQTIKKV--SWALKKQSQKSGFSTVQTEILFGQLAIQQGIPGLELALEK 955

Query: 894  IG-IHLTGFADRIDLL--KSGFVD--ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAG 947
             G I + G  DR+D L      V   + DYK+             +  Q+          
Sbjct: 956  QGKISVRGKIDRVDQLITNDHEVYLGVIDYKSSHRKFNITEVYYGLAMQMLTYLDVALMD 1015

Query: 948  SFSQIDC-RKVANLFYIRL 965
            +   +    K A  FY+ +
Sbjct: 1016 AVQLVGKTAKPAGSFYLHV 1034


>gi|291531718|emb|CBK97303.1| ATP-dependent nuclease, subunit B [Eubacterium siraeum 70/3]
          Length = 1132

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 92/872 (10%), Positives = 217/872 (24%), Gaps = 157/872 (18%)

Query: 157 DIIETEEKKWEDLHALK-------NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
           + ++      ++L            E+  +        +      + ++L E  A     
Sbjct: 119 NELKAAGISADELTKTLYSPEKNTAERLPVHLAEKMGDIAAVYSVYDKKLTEKYA-DRQD 177

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
                 +             I I G      A    +  +A+     +V    D +    
Sbjct: 178 NLTLAAQVIRNGDSFDENTTIYIDGFDSFSGAQQNFLRALADKGVNFVVALCTDGNKAE- 236

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
                                                    +     + E    + +  K
Sbjct: 237 --------------------------------VFATCDRTERLFERGNREDIKHTRLCGK 264

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--- 386
           +    + +     + L+  + +       + +  + +   EA  +   +R  +       
Sbjct: 265 APRYKNGNLKALRNFLQTGVKDSTAGSDGITMAYSSSVSGEADFVCANIRKLVRSEGYRY 324

Query: 387 KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
              A+I A        V     R+ + +     +P+S         +LL A         
Sbjct: 325 SDIAVICASPAKYKDAVNSAAARYDVPVFADLPVPISEKPMLRFFEALLKAADNP-TGTN 383

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           I   ++    +               E    +    +     L    L     +  +   
Sbjct: 384 ILRYIRSGFVRLPS------------EKNNGKTVPMTLKERHLVEQHLMEEYAECWDLKR 431

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
             W   +          + +  +  +TPLV +  +     G   +  +T      +    
Sbjct: 432 KKWDKPMPHITNASEQRVEEIRIATVTPLVEFAKSVRGIGGRELVKKFTAFLFDKVDISA 491

Query: 566 LDEHRKLPN------------LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
             + +   N              + +  +T+S + + + ET         E+  +I    
Sbjct: 492 AIQGKCQDNSTRELRYVKELTEEYNQLWRTVSEMLTSLYETLDDTPLTLAEFSALIHSCA 551

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK-NTAKNPFLSRVMQSDL 672
              ++        ++       +R      + + G  +G +P      N   +      L
Sbjct: 552 SRISISRTPNVLDSVLFGDPARTRSREVKAVFVMGAADGAFPDIYPEGNSVFTSDDVQRL 611

Query: 673 NLKTAEKYIGQAAH-------DFEMANGTRHLIYTRSLRENNI----------------- 708
                E    +A +          M      L  T +  + N                  
Sbjct: 612 AENDIELENDEARYSSAVLDAYKAMTLAGEKLFITFTGEKENASEYIADIAKHFGAKLIN 671

Query: 709 ----------PTIAS---------RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
                      ++ S           L               +K           +   +
Sbjct: 672 VDNLDALYMTESVKSAEKQYVINNSRLTDGQKKAVEAVLSENEKESSSIGRIKAVMSNNS 731

Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                 R     P+       S + I++L    +A + R  + L          + ++ G
Sbjct: 732 GNSDIHRISDIAPIVFPQTALSPTAIEKLNGCKFAYFLRYGMNLSSSAGI--AMNASNYG 789

Query: 810 TLFHNIITELIK-----KRINKNTPEINHLMKQIIDSHFEK---------ENLPPHIDII 855
            + H I+    +      R N N    +  +K +I+    +         EN+    + +
Sbjct: 790 NIMHYIMKYCFENMYDGARENGNPHVSDDRIKDLIEQALAEYREKYLLTEENMSARFNTL 849

Query: 856 W--RHLFHKISHSFLEHEEKIQSSIEKIFVNI----------------PAKMAIES---I 894
           +    +       ++  E + +S     +  +                   + +      
Sbjct: 850 YNALSVTAFYLIKYMAQELE-KSRFVPSYFELKLESGKSENGFDISPYSFDIELADKSRQ 908

Query: 895 GIHLTGFADRIDLL-----KSGFVDITDYKTG 921
            I + G  DR+D+        G + + DYKTG
Sbjct: 909 TITVGGTVDRVDIAYNDDKSGGQIRVIDYKTG 940


>gi|317052675|ref|YP_004113791.1| UvrD/REP helicase [Desulfurispirillum indicum S5]
 gi|316947759|gb|ADU67235.1| UvrD/REP helicase [Desulfurispirillum indicum S5]
          Length = 1123

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 89/770 (11%), Positives = 188/770 (24%), Gaps = 99/770 (12%)

Query: 226  TKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
                I++     +  +  RL+  +       +G  +    D       +           
Sbjct: 401  RLNHILVDEFQDTSASQYRLLRKLTAGWQPGDGRTLFVVGDPMQSIYRFRQAEVGLFLQA 460

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                      Q      L+ L +          V       S V          +   + 
Sbjct: 461  RQ--------QGIGNVQLEPLSLSVNFRSTAAIVHWNNQIFSRVFPAVEEISSGAIAYSA 512

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-DENKKKSALITADRNLARR 401
                +       C     L+     +EEA +I   +         +  A++  +R     
Sbjct: 513  SSAFHGEAEGPDCAVQAHLLPTAKAQEEARAILACIEDIRSRHPGETIAILARNRTHLDE 572

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            +   L     +       PL+ +     L  +  A+    D +A   L++ P       +
Sbjct: 573  IISLLKGGATSFSAIDIAPLAHSGAVRDLQIITRALCHPGDSIAWLALLRAPWCGLTLAD 632

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
              L  A                   D ++L                 Q+RL      L  
Sbjct: 633  LQLLTAGA-----------------DGRTLWQCLQEATCVEPLSADGQARLLRIRPALIQ 675

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             + +   Q +   V     +      L      +     L  +   E    P +      
Sbjct: 676  AMEERGRQGLARWVEGTWRQLGGPAFLERPAQLEDARVFLHILHSLEEEPFPEIQH---- 731

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
                                       +   +            S+L ++   +++ L F
Sbjct: 732  ---------------------------MEEALASVYCSEDPSADSSLQLMTIHKAKGLEF 764

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMANGT 694
            D +I+ GL  G   ++     +     +S        +  +  ++            +  
Sbjct: 765  DHVIIPGLCGGSRSESKPLLAWHEGPHRSADMELLLAIARRGRDQKESSLYEYIRQMHQR 824

Query: 695  ------RHLIYTRSLRENNI-----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                  + L+Y    R              R  +            ++ ++ Q       
Sbjct: 825  CMENEQKRLLYVACTRARKGLHLFARLRPDRSGEDWASPRSGSLLRHIWEQLQPLAPPLP 884

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPR--TYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                  +Q   + P P   + +  +    +   +  L   P    A+             
Sbjct: 885  DAPEAEEQQQAQPPVPLKRVHSDWQIPRVAPRILPNLAITP----AQHDEGEPQPEFQWA 940

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
                   G LFH  +  L +K   ++       +++ +     +  +P  +         
Sbjct: 941  GEMARLVGVLFHQWVRRLGEKNERESLSGDMEELRKNLRWSTYQLGVPHELRASVVERTI 1000

Query: 862  KISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                +    +       SS +      P     +  G  +    DR+ +   G   I DY
Sbjct: 1001 TALGNMGVDQRGRWILSSSHQDSRWEYPLTGT-DQRGHIVNIIIDRMFIDDQGTRWIIDY 1059

Query: 919  KTGDNPKK------ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
            KTG +            Q+   PQL             ++  + V    Y
Sbjct: 1060 KTGQHEGGGLEHFLREEQQRYAPQLERYGFLA-----GKLGPQPVRLGLY 1104


>gi|154485116|ref|ZP_02027564.1| hypothetical protein EUBVEN_02839 [Eubacterium ventriosum ATCC
           27560]
 gi|149734069|gb|EDM50188.1| hypothetical protein EUBVEN_02839 [Eubacterium ventriosum ATCC
           27560]
          Length = 1144

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 106/873 (12%), Positives = 246/873 (28%), Gaps = 111/873 (12%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVEL 202
           +    A+ +  I+   +      + L+ +              + ++I S  + E + E 
Sbjct: 114 SMPGFAEKMKTIVSEFKQYGITDDVLNNMKAECDSKPLLRHKLNDVEIISDAFNEYIKEK 173

Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
             ++     + +                 I G TG  P   +++  +  H  G  +   L
Sbjct: 174 VITT--EDVLTIFCKYISSSDFIKNTYFYIDGFTGFTPIQYQVLELLIKHCAGVKIAITL 231

Query: 263 DCHIPTAIWNTITEKSTNITSSN-TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                 ++ N  ++ +  I+       S    + L  +++  +I++++   +G       
Sbjct: 232 PEDEFQSLRNAYSKGNNAISKYELFNLSKDTLWKLKDIINRNNIEQQETVIVGEGQAPYR 291

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            R                   ++  N     ++    + +    N REEA  +A  +   
Sbjct: 292 IRDNKELTFL---------EKNLFRNNSSKYRENCKALEVHSMSNPREEAAYVAGRISEL 342

Query: 382 LDENK---KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
           + +        A+IT D +   R ++ E ++  I   I     +++      + + +  +
Sbjct: 343 IVDKGYRYNDIAVITGDMDGYYRYIEEEFSKNNIPAFIDHKHNIASNPFVDGIKAAIEIV 402

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
            K   +  +  L++               A + +E   L+  +  +           +  
Sbjct: 403 EKDFSYETVFHLIRLGFLPID------REAVDIMENYVLQSGRRGFKSYGRLWEKAYKGM 456

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
           T +    V   + +L E  + L   L                   +      I D     
Sbjct: 457 TAEELDMVNQAREKLVEIIRPLREELKKKKATVREYTKAVYQFVQANNMQRQIDD----- 511

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               +    ++        +E+   T+ +L  +I+E          E+  I+    +   
Sbjct: 512 ---YRIEFQNQGEISRAKEYEQVYVTIITLLDRIVELMGDEVLTIKEYKQILQAGFESVK 568

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLI-LGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673
           V        T+ +     +RL +   +I   G+N+G+ PK       ++   +  L    
Sbjct: 569 VGIIPPGLDTVMVGDIERTRLKDTKRIIFFMGVNDGIIPKAGQAGGIITDTDREFLEKNN 628

Query: 674 ---LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
                TA   + +            T  +  T S   ++  T    ++   L+    +  
Sbjct: 629 YILAPTATDNVFKQKFYLYTIFAKPTEKMCITFSKSGSDGATRRKSYIISTLMNLFENLK 688

Query: 729 DNLKKRGQCYLDWTRKLDYTTKQP------------------------------------ 752
              +   +  L+                                                
Sbjct: 689 IIDEDESEITLNQVTTRSKALDYLSQNIYEYSKEGDSGIFKELMATVMKNKEYSKVINLM 748

Query: 753 ----------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
                               L         + +++     Y+ +    LKL     F+  
Sbjct: 749 FDGAFYSAKNPILDENVARQLYGNKENIGITRLERFAACAYSQFLNNGLKLGERKKFE-- 806

Query: 803 PDRTDRGTLFHNIITELIKK-------RINKNTPEINHLMKQIIDSHFEKENLPP----H 851
               D G L+H+ I E             + +  +  +++   I+   E+          
Sbjct: 807 LAAFDIGNLYHSAIKEFFDTINTNNIKWADLDDKKSENIINDSIEKVMEQYENDALNDIA 866

Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
                +      S   +    K   S   +      ++A         G  DR+D  + G
Sbjct: 867 RSAFIKKQVKDTSTETVNALVKHIRSGNFLPREYELRIA--------HGRVDRVDTFEDG 918

Query: 912 ---FVDITDYKTG-DNPKKETAQKLIDPQLSLE 940
              +V + DYK+G            +  QL + 
Sbjct: 919 NNIYVKVIDYKSGNKVFNVTETFLGLQMQLMVY 951


>gi|325142857|gb|EGC65224.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           961-5945]
          Length = 1069

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 109/875 (12%), Positives = 217/875 (24%), Gaps = 80/875 (9%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIIVQSQGMRRYLNTCLARDLGVAANLS---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W             W  R ++    S         +   
Sbjct: 146 RPQWIDAWQQGRRLGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLE 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 SLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGSRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N D+   K  NI      + ++ A +   E   +   L   L E+        A++T +
Sbjct: 311 QNLDMPSEKAGNINTDDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L+ L + +    +   +  L
Sbjct: 371 IESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D        +        +
Sbjct: 431 LETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAVERMILGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +       +    L T            +I +W       L+ 
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAALLETLSDIVRIWRQPATIGEWVARCRDLLET 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +   E     ++   E         +++ +    +       I  I R +D E+      
Sbjct: 551 LFQAEADDQKSVQNLENEWVKWQAETELAQFSGQLP--QQTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-- 738
                E     R  L  +   R+   +     S  L  L+         N ++  Q +  
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMTGTNSRQLAQNWIE 724

Query: 739 -------------------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
                                     D+   L  T + P     +P              
Sbjct: 725 QHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPV-ENAEPVAEIGQD 783

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIKKRINKNTPEIN 832
           E  +   +P  V+ ++ L        +               I    I+ R      + +
Sbjct: 784 EFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFEPQHADQIAKTYIEARREGR--DFS 841

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
               +I             +  +W+  F   +   
Sbjct: 842 QTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873


>gi|291556730|emb|CBL33847.1| ATP-dependent nuclease, subunit B [Eubacterium siraeum V10Sc8a]
          Length = 1175

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 91/864 (10%), Positives = 222/864 (25%), Gaps = 141/864 (16%)

Query: 157 DIIETEEKKWEDLHALK-------NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
           + ++      ++L            E+  +        +      + ++L E  A     
Sbjct: 162 NELKAAGISADELTKTLYSPEKNTAERLPVHLAEKMGDIAAVYSVYDKKLTEKYA-DRQD 220

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
                 +             I I G      A    +  +A+     +V    D +    
Sbjct: 221 NLTLAAQVIRNGDSFDENTTIYIDGFDSFSGAQQNFLRALADKGVNFVVALCTDENKAE- 279

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
                                                    +     + E    + +  K
Sbjct: 280 --------------------------------VFATCDRTERLFERGNREDIKYTRLCGK 307

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENK 386
           +    + +     D L+  + + +     + +  + +   EA  +   +R  +       
Sbjct: 308 APRYKNGNLKALRDFLQTGVKDSKADSDGITMAYSSSVSGEADFVCANIRKLVRCEGYRY 367

Query: 387 KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
              A+I A        V     R+ + +     +P+S         +LL A         
Sbjct: 368 SDIAVICASPAKYKDAVNSAAARYDVPVFADLPVPISEKPMLRFFEALLKAADNP-TGTN 426

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           I   ++    +    +         + +     +     +M+  +   D    + +    
Sbjct: 427 ILRYIRSGFVRLPSEKN----NGKTVPMTLKERHLVEQHLMEEYAECWDLKRKKWDKPMP 482

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS--DWTKLTVTCLQN 563
               +     ++     +   +    +              +      D +       Q+
Sbjct: 483 HITNASEQRVEEIRIATVTPLVEFAKSVCGIGGRELVKKFTSFLFDKVDISAAIQGKCQD 542

Query: 564 VCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
               + R +  L   + +  +T+S + + + ET         E+  +I       ++   
Sbjct: 543 NSTRQLRYVKELTEEYNQLWRTVSEMLTSLYETLDDTPLTLAEFSALIHSCASRISISRT 602

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP--FLSRVMQS----DLNLK 675
                ++       +R      + + G  +G +P    +    F S  +Q     D+ L+
Sbjct: 603 PNVLDSVLFGDPARTRSREVKAVFVMGAADGAFPDIYPEGNSVFTSDDVQRLAENDIELE 662

Query: 676 ----------------------------------TAEKYIGQAAHDFEMANGTRHL---I 698
                                              +E     A H         +L    
Sbjct: 663 NDEARYSSAVLDAYKAMTLAGEKLFITFTGEKENASEYIADIAKHFGAELINADNLDALY 722

Query: 699 YTRSLRENNIPTIA-SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
            T S++      +  S  L               +K           +   +      R 
Sbjct: 723 MTESVKSAEKQYVINSAQLTDGQKKAVEAVLSENEKEPSSIDRIKAVMSNNSGNSDIHRI 782

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
               P+       S + I++L    +A + R  + L          + ++ G + H I+ 
Sbjct: 783 SDIAPIVFPQTALSPTAIEKLNGCKFAYFLRYGMNLSSSAGI--AMNASNYGNIMHYIMK 840

Query: 818 ELIK-----KRINKNTPEINHLMKQIIDSHFEK---------ENLPPHIDIIW--RHLFH 861
              +      R N N    +  +K +I+    +         EN+    + ++    +  
Sbjct: 841 YCFEKLYDGARENGNPHVSDGRIKDLIEQALAEYREKYLLTEENMSARFNTLYNALSVTA 900

Query: 862 KISHSFLEHEEKIQSSIEKIFVNI----------------PAKMAIES---IGIHLTGFA 902
                ++  E + +S     +  +                   + +       I + G  
Sbjct: 901 FYLIKYMAQELE-KSRFVPSYFELKLESGKSENGFDISPYSFDIELADKSRQTITVGGTV 959

Query: 903 DRIDLL-----KSGFVDITDYKTG 921
           DR+D+        G + + DYKTG
Sbjct: 960 DRVDIAYNDDKSGGQIRVIDYKTG 983


>gi|316985731|gb|EFV64676.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           H44/76]
 gi|325140819|gb|EGC63329.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           CU385]
 gi|325199688|gb|ADY95143.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           H44/76]
          Length = 1069

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 106/900 (11%), Positives = 216/900 (24%), Gaps = 86/900 (9%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194
           L    +    LA  LADI D       +W D               W             
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           W  R ++    S         +               + G +   P   +L+  ++ H +
Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             +             W  + E +  +        T   + L   L        D     
Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            +  E          + L    +D++N  +      ++      + ++ A +   E   +
Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSEMAGSVNTGDGSIRIVSAHSPLRELQIL 345

Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424
              L   L E+        A++T +          +          +   +S        
Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNK 480
                L+ L + +    +   +  L++             +  L     A   V    + 
Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDG 465

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYK 538
                 D        +        +P   + + ++       +    +       L T  
Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPKGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLT 525

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                     ++ +W       L+ +   E     ++   E         +++ +    +
Sbjct: 526 DIVRIWRQPATVGEWVARCRDLLETLFQAEADDQKSVQNLENEWVKWQAETELAQFSGQL 585

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                  I  I R +D E+          +     +  R L F  + L GLN+G +P+NT
Sbjct: 586 P--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715
               F           +             E     R  L  +   R+   +     S  
Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699

Query: 716 LQRLLVLGGTDFFDNLKKRGQCY---------------------------LDWTRKLDYT 748
           L  L+           ++  Q                              D+   L  T
Sbjct: 700 LGELIDTVAAMAGIGSRQLAQNLIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQT 759

Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
            + P     +P              E  +   +P  V+ ++ L        +        
Sbjct: 760 PEPPQPFFDQPV-ENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPF 818

Query: 809 -GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
                  I    I+ R      +      +I             +  +W+  F   +   
Sbjct: 819 EPQHADQIAEIYIEARREGR--DFAQTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873


>gi|293400339|ref|ZP_06644485.1| hypothetical protein HMPREF0863_00623 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306739|gb|EFE47982.1| hypothetical protein HMPREF0863_00623 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 882

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 86/655 (13%), Positives = 190/655 (29%), Gaps = 79/655 (12%)

Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
               A N+R+E    A  +    +   +  A+  AD +    +K    R+ I        
Sbjct: 178 KFYHAVNKRQEIEGCAQYILR-HEMKAEDVAITLADTSYIPILKQIFNRYHIPY-----T 231

Query: 420 PLSTTLHSSILTSLLNAIFKLN---DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
            L  +  SSI+    + +           +   +   +      E+ LS     L++   
Sbjct: 232 NLVASAASSIIVKRAHMLLNYYLQPTQEHLLACLDCGIFH----EETLSSLLQYLQIYQK 287

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
              +    +  L +       T               +E +E A +   HI + + PL+ 
Sbjct: 288 DFFQPFDHLQTLSTTSHILNETDVA----------KLKEIEERAEIARQHIAEQLRPLMH 337

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
             + +              +      ++  D  +             +     +  +   
Sbjct: 338 PASYEEM---------LLTVLKLLKNSLGNDMQQSAVLQDVMNVINEVYPYIKEKDD--- 385

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                    I  + +L+   TV   I +   + +    +          L G  +  +P 
Sbjct: 386 ---------ITFLLQLLADITVHSTIHQLQGVSVTSLKQGSCTRKHH-FLLGATQNQYPA 435

Query: 657 NTAKNPFLSRVMQSDLNLKTAE-KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
             AK           L   + E +Y        ++ N ++HL  +  L      ++    
Sbjct: 436 FMAKRGIFDEHYYETLPYPSMEHRYQLHLKQLRKLLNRSQHLYISYPLGTYEGKSL---- 491

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
                     +      +R + Y                 +      +  Q    S S I
Sbjct: 492 ------EAALEIEQMFDERAKPYPLQEMYEKADIALTITSQTAHALFVRNQQIKGSISSI 545

Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
           ++ +  P++ + R  L +            +  GTL H ++  L K++    T      +
Sbjct: 546 ERYVKCPFSYFLRYGLGIREPMKL--GFADSYMGTLSHYLLETLTKQQGKAYTSVCETTL 603

Query: 836 KQIIDSHFEKE-NLPPHID---IIWRHLFH----KISHSFLEHEEKIQSSIEKIFVNIPA 887
             +ID   +    +   +     I R        +        EE   S  +        
Sbjct: 604 TALIDKEIDALQEVFSDMRTRLQILRIRIESSMMQTLRRLASFEE--HSHFQPWQQEREF 661

Query: 888 KMAIE---SIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAA 943
           +  I     + + L GF DR+D+     + I DYK+      +      +  QL   +  
Sbjct: 662 QYEIPVTSDVTLALHGFIDRLDVYDD-ILCILDYKSSAKTLSETKVFAAMQLQLLTYSIV 720

Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
           +       ++ +++   +Y+ LK +          ++      +     +L + +
Sbjct: 721 MAK-----LEQKEIMGAYYLSLKNENIPHPAGKLSRRKPV-TYTPIEKADLQDAI 769


>gi|257054747|ref|YP_003132579.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017]
 gi|256584619|gb|ACU95752.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017]
          Length = 1090

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 118/1057 (11%), Positives = 248/1057 (23%), Gaps = 163/1057 (15%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLA-SVTIYVPTKRAIQELRS 62
            ++  V    P          A    T+     +   N L+    V     T++A ++L  
Sbjct: 29   EQAAVVAAPPEPALVVAGAGAGKTETMAARVVWLVANGLVTPDRVLGLTFTRKAARQLAD 88

Query: 63   EFI-------------------EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
                                        ++  P + +        +   LL  Y L  PV
Sbjct: 89   RVRARLRRLAGSGLLDDVDPSGRRRLAVASGEPTVLT-----YHAYAGRLLAEYGLRLPV 143

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIE 160
                R+L       +    +     DL  +          + + LA  L + +   + + 
Sbjct: 144  QPGARILSETASWQLAYRVVSSWDADLDTDKAPMTVTE--HLLALAGELGEHLVSPERLR 201

Query: 161  TEEKKWEDLHALKNEKYGMWWLLAADFLKIAS------------KYWTERLVELNASSPV 208
                 + DL        G       + L I +            + +  R     A    
Sbjct: 202  EYTTWFCDLVENAPRAKGQRAKPKKELLDIVAAQRLRLQLLPLVEAYEHRKRAEGALDFA 261

Query: 209  GYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                   R            +   G +++     +  A   L+ ++   P    V    D
Sbjct: 262  DQMSLAARLAETQPDVVASERERYGAVLLDEYQDTGHAQRVLLRSLFGGPAPMPVTAVGD 321

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   W   +  +    +++            +L +         +     S      
Sbjct: 322  PAQAIYGWRGASAANLPRFTTD----------FPRLDERTGQPVPAREYGMLTSFRNPPE 371

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---- 379
             + ++ S   P  +       L  +        +D+ +    +   E   +A  +     
Sbjct: 372  VLTLANSIAEPLRAKGLGVQELRARA---DAGPADIRVALLPDVVSEREWVADQIATRWF 428

Query: 380  --MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                       +A++   R     +   L   G+ +++     L      + L + L  +
Sbjct: 429  AERDATGTAPTAAVLVRRRVDMAPMAAALRARGLPVEVVGLGGLLDEPEVADLVATLRVL 488

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
             +     A   L+     + G  +               R         D         A
Sbjct: 489  AEPLSGTAAVRLLTGARWRLGAADLGAL----------WRRAGELSAADDTVVAERAEQA 538

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
               +    P   SR SEE       L   +      +        +      + D   L 
Sbjct: 539  GLVDAIDDPGEPSRYSEEGYARIRRLSRELEALRRRMDQPLPELVADVERTMLLDVEALA 598

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                             +           +      + +    + ++++   TR  DG  
Sbjct: 599  R-------------PGAVGRAHLDAFADVVNDYAENSPTATLLSFVDYLAAATRAEDGLE 645

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGL------NEGVWPKNTAKNPFLSRVMQSD 671
                      + +L    ++ L +  + +  L      NE            L   ++ D
Sbjct: 646  PGEVEVVPDRVQVLTAHSAKGLEWRIVAVPHLVDRTFPNERKTSSWLKTVTELPAALRGD 705

Query: 672  L---------NLKTAEKYIGQAAHD----------------FEMANGTRHLIYT----RS 702
                        +  ++     A                  +     + H +        
Sbjct: 706  AQDLPQLALRGGEDRKQVEEALAEHEEGFRRRHAEEERRLCYVALTRSEHCLVVSGYRWG 765

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG------QCYLDWTRKLDYTTKQPHYKR 756
                  P   S +L  +      D    + +              +R+ ++       +R
Sbjct: 766  DANATEPKAPSPFLTEVAERVREDPTVGVVEHWCSEPGENPLAGVSRETEWPVDPLGARR 825

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVY---------------ARRILKLDFIPHFKK 801
            P                E          +                     +        +
Sbjct: 826  PAVDEGARLVLEALEELESGADAETDEEITEEDDPDNWVSDTDVLLAERARAREPQVEIE 885

Query: 802  DPDRTDRGTLFHNIIT--ELIKKRINKNTPEINHLMKQ------------IIDSHFEKEN 847
             P +     L        +L ++         N   ++              D  F+ + 
Sbjct: 886  LPGKLSVSQLVDLAGEPEDLARRLRRPLPFPPNAYARRGTEFHGWLERRFASDKLFDLDE 945

Query: 848  LPPHIDIIWRHLFHKISHSF-LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
            LP   D            +     E    +      V +P   AI+  GI + G  D + 
Sbjct: 946  LPGAADADVGDADPADLEALKEAFERSPWAQRVPHDVEVPFSTAID--GITVRGRIDAVF 1003

Query: 907  LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
                G   + D+KTG  P  E     +  QL+    A
Sbjct: 1004 ADPDGGWTVVDWKTGALPDAERMPA-LAVQLAAYRLA 1039


>gi|307942842|ref|ZP_07658187.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4]
 gi|307773638|gb|EFO32854.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4]
          Length = 1174

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 85/828 (10%), Positives = 191/828 (23%), Gaps = 106/828 (12%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIA 233
                +      + +    +           +   R  A                  I++ 
Sbjct: 347  RALLELAHAVIERYENAKMAKGYLDFEDLVVKTARLLARSDAALWVQYKLDQGLDHILVD 406

Query: 234  GSTGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEK----STNI 281
             +  + P   +++S++A               +    D       +              
Sbjct: 407  EAQDTSPRQWQVVSSLAAEFFSGESASDRVRTLFAVGDEKQSIYSFQGAVPAYFDAMRRQ 466

Query: 282  TSSNTTYSTH------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
             S +   + H       Q S     D L    +  K               + ++     
Sbjct: 467  FSKHAEAAQHTFHSVDLQLSFRSTPDVLGAVDKVFKESDAYQGLSQELKAPVHEAIRRDP 526

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREE-AISIAIALRMSLDE----NKKKSA 390
                      E  +   +     +  +   +     A  I+ A+R  +++          
Sbjct: 527  GLVEIWPLEQEADVVEPEDWREPIDHVGISSPPARVAQRISTAIRDWMEKGEVAPGDIMV 586

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            L+         +  EL + GI +  S  + L+  +    L +L   +    D +++A ++
Sbjct: 587  LVRKRGAFVEILNRELKQRGIPVAGSDRLVLTDHIAVQDLAALGRFLLLSEDDLSLAAVL 646

Query: 451  KHPLAKFGFPEK-------YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            K PL +    +           R    L    +    +      ++S +       + + 
Sbjct: 647  KSPLFQLTDEDLLEIARDPDGRRRAGTLWQGLVSRGMDMPKWEKVRSRLDIW--RARADF 704

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
              P                    +   +  +               + ++  LT+   Q 
Sbjct: 705  MPPFEFYSRLLSADGGRRQFRKRLGVEVDDV---------------LDEFLNLTLAYEQT 749

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                    L   W       +    +        +  +  + ++    ++     KP   
Sbjct: 750  GTPGLEGFLA--WMAAAPTEIKRELTSTKGLVRVMTVHGSKGLEAKVVILVDPGSKPVNA 807

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                 F+             + L             +  + +  +++    +  E     
Sbjct: 808  THDPAFLPRESGVAGAPPALVWLP--------TKADRTQWHNSAIEARHETQAEE----Y 855

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                +         +        +       +      L                  W R
Sbjct: 856  RRLLYVALTRAEDRLVVCGWEPKSGAPENGWYNLVSRALTADAREIKNTVGETTAWQWQR 915

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL------------ 791
              +        +        E  P         Q +  P     R+              
Sbjct: 916  AANDPEVMDLQETHHSDAQTETAPMLDLPPPPPQWLAKPVKPLPRKRRLQPSKVFEVMEE 975

Query: 792  --KLDFIPH-------FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
              ++D +P                +RG + H ++  L +         I+  +   +   
Sbjct: 976  KERIDPVPTSARLKSRLADPSWPLERGRIVHRLLEVLPEMPAEDRDGAIDRFLDASLPDA 1035

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLT 899
            F+            +          L  EE      E     +P    I       I ++
Sbjct: 1036 FKAR----------KSELSDEIQKILLSEEFASLFAETARAEVPVAGTILTTGGAEIAVS 1085

Query: 900  GFADRIDLLKSGFVDITDYKT--GDNPKKETAQKLIDPQLSLEAAALK 945
            G  DR+       V I DYKT        E        QLS+    LK
Sbjct: 1086 GQIDRLVECPD-HVLIVDYKTNVSVPRHPEEVSAEYRAQLSVYRELLK 1132


>gi|121601832|ref|YP_989604.1| double-strand break repair helicase AddA [Bartonella bacilliformis
            KC583]
 gi|120614009|gb|ABM44610.1| double-strand break repair helicase AddA [Bartonella bacilliformis
            KC583]
          Length = 1155

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 104/863 (12%), Positives = 225/863 (26%), Gaps = 118/863 (13%)

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIP 240
             +  K + +                 +            ++ +      I++  +  + P
Sbjct: 346  SLYLKIYADLKKANGLLDFDDLIERTLHLLQRRGASQWVQYKLDHGIDHILLDEAQDTNP 405

Query: 241  ATARLMSTVA--------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
            A  +++  +A           N   +    D       +     ++              
Sbjct: 406  AQWQIIQLLAKEFFTGDSQRTNTRTIFAVGDEKQSIYSFQGAEPENFAKNGRMIQKQIQH 465

Query: 293  ----------QYSLAKLLDFLDIKREDVKRLG---NVSNEMYGRSMVISKSFLPPDTSDM 339
                       YS     D L       +       +S +         +   P D    
Sbjct: 466  VNEKFEKIQLHYSFRSTADVLKSVDLVFETPENYKGLSADNAKTVHEPIRVNSPGDVIVW 525

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREE---AISIAIALRM--------SLDENKKK 388
                   + +P+     S V  ++    R     A +IA  L+          L      
Sbjct: 526  DVISKQTSTLPD--DWHSTVDHLDTPEVRLADKIATTIADWLQKGEMLPAKGRLLRASDI 583

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
              L+         +   L    I +  +  + L++ +    L +L   +    D +++A 
Sbjct: 584  MILVRKRDQFVPALSRALKLRNIPVAGADRLQLTSHISVQDLMALARFVLHPKDDLSLAC 643

Query: 449  LVKHPLAKFGFPEKYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            ++K PL        Y   A+   +L         +     ++   +        +   V 
Sbjct: 644  VLKSPLFALSEEALYQLAAQRTGSLWQSLNAHASSHDYFKEIFENLSKY-RALVDQIPVF 702

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
             + S +   DK    +L     +    L  +     +                 L+ +  
Sbjct: 703  EFYSHILNNDKGRQKILARLGPESNEVLDAFMDYTLTIQKTG-----LPGLQAFLETLSK 757

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
            +E      L      +    +    +     ++A+ +  +D                   
Sbjct: 758  NEPEIKRELD-----QNHEEVRIMTVHAAKGLEASVVFLVD------------------- 793

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
                 G+               LN            F ++  +  L+             
Sbjct: 794  ----SGSAIWNSHYAPHFFKLPLNGKQAFIWRPNAEFKTKPFEKALSHLKESAEEEYRRL 849

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
             +         +      +     + + WL  +            K        W   + 
Sbjct: 850  LYVGMTRAEDRLIICGYSQKRE--VPNTWLHLVKNALKPYAVP-TKGPADDIAAWRYSIT 906

Query: 747  YTTKQP-------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA------------VYA 787
             +T  P          +  P  P     +  + S + +++                   A
Sbjct: 907  PSTSFPIDQKILGEASQEFPPLPAFFHHKIPAESALPKILKPSVTNFATDTDSEIELFSA 966

Query: 788  RRILKLDFIPHFKKDPDR--TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
            ++IL +  I   K        + G L H ++  L      K        +  I  SH++ 
Sbjct: 967  QKILNVSPILEAKNTNKAFSIEYGNLIHKLLQYLPDCPPEKRQDYAQQYL-NIKASHWDD 1025

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
                  +  IW      I  +   H + + S   +  V++   + I      ++G  DR+
Sbjct: 1026 TKKNNALHDIW-----AILDN--PHLKLLFSDSSRAEVSLMGIVKIRGKEQMISGRIDRL 1078

Query: 906  DLLKSGFVDITDYKTGDNPKKE-TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
             + +   +   D+KTG  P+ E    +    Q++L    L+      I   K    F I 
Sbjct: 1079 CITQD-CILFADFKTGTPPEDETAITQNYWSQMALYRKMLQ-----TIYPEKTIQAFLIY 1132

Query: 965  LKQKFKIDCITNDKKKYSADELS 987
              Q  KI  +   K     DE++
Sbjct: 1133 -SQGAKIFTLLPKKLDTLLDEIA 1154


>gi|150398844|ref|YP_001322611.1| UvrD/REP helicase [Methanococcus vannielii SB]
 gi|150011547|gb|ABR53999.1| UvrD/REP helicase [Methanococcus vannielii SB]
          Length = 1016

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 93/274 (33%), Gaps = 26/274 (9%)

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
            PPL  +   +S S+IKQ I  P       +L +               GT  H I  +L 
Sbjct: 767  PPLVDKSMKFSASKIKQYIGCPLNFKYNYVLNIPTPKKAH-----LTVGTDVHKIFEDL- 820

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENL-PPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                NK       L K ++  + ++ +               K+   + + E K ++  +
Sbjct: 821  GILKNKGEAIDLELAKSMLSENLKEFSFNSKTEFEEEYSKSLKMIEYWFDFESKNKN--K 878

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-ETAQKLIDPQLS 938
             +       + +   G   TG  DRID+   G   I DYKTG         +   D Q++
Sbjct: 879  ILATEEKFNLDL--GGFTFTGIIDRIDVTPDGEYIILDYKTGKKSSVLTKPKMAEDVQMA 936

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
            L A A+    F +     V      ++ Q +    ++ D          E   +N+I  V
Sbjct: 937  LYAMAV----FEKYGKYPV------KMGQLYVNPDVSKDVIIDVNPANIENIKENVISNV 986

Query: 999  TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
              + + +  F        K     +Y  +    E
Sbjct: 987  NKIMDED--FTVINTP--KMCYFCDYKDICEYLE 1016


>gi|319410967|emb|CBY91363.1| exodeoxyribonuclease V gamma chain [Neisseria meningitidis WUE
           2594]
          Length = 1069

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 106/900 (11%), Positives = 215/900 (23%), Gaps = 86/900 (9%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194
           L    +    LA  LADI D       +W D               W             
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           W  R ++    S         +               + G +   P   +L+  ++ + +
Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEYCD 229

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             +             W  + E +  +        T   + L   L        D     
Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            +  E          + L    +D++N  +    + ++      + ++ A +   E   +
Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVNTGDGSIRIVSAHSPLRELQIL 345

Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424
              L   L E+        A++T +          +          +   +S        
Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNK 480
                L+ L + +    +   +  L++             +  L     A   V    + 
Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLALLETAPVLRRFGLTEDDLPLLHDMVADLNVRWGLDG 465

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLVTYK 538
                 D        +        +P   + + ++       +       +    L T  
Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLT 525

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                     ++ +W       L+ +   E      +   E         +++ +    +
Sbjct: 526 DIVRIWRQPATVDEWVGRCRGLLKTLFQAEADDQKAVQNLENEWVKWQAETELAQFSGQL 585

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                  I  I R +D E+          +     +  R L F  + L GLN+G +P+NT
Sbjct: 586 P--QQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715
               F           +             E     R  L  +   R+   +     S  
Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699

Query: 716 LQRL----------------LVLGGTDFFDNLKKR-----------GQCYLDWTRKLDYT 748
           L  L                  L          +R                D+   L  T
Sbjct: 700 LGELIDTVAAMTGTNSRQLAQNLIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQT 759

Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
            + P     +P              E  +   +P  V+ ++ L        +        
Sbjct: 760 PEPPQPFFDQPV-ENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPF 818

Query: 809 -GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
                  I    I+ R      +      +I             +  +W+  F   +   
Sbjct: 819 EPQHADQIAEIYIEARREGR--DFAQTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873


>gi|323141943|ref|ZP_08076800.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium sp.
            YIT 12067]
 gi|322413578|gb|EFY04440.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium sp.
            YIT 12067]
          Length = 1140

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 110/1002 (10%), Positives = 253/1002 (25%), Gaps = 144/1002 (14%)

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                   +     L       Q L E A L+   + +L     +        +      A
Sbjct: 217  FAAVREVIEAREALGAKTKGRQTLTEAAGLLDEMQKQLLAPEPECSLLDASGVVKVSGKA 276

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
              LA  L ++ ++ +        L   K       W      L+      + R  E N  
Sbjct: 277  --LAAELTNLKNLRQELN---HVLLNAKGCDLVQDW---LAVLQEFYACLSARKQENNIL 328

Query: 206  SPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVA--NHPNGAIV 258
                  +  +             +     I++     +     +L+  +          +
Sbjct: 329  FNDDLDLLAIEHLQKNEALRQKYQERYKYIMVDEFQDTNERQRQLIYLLCGNKLDGKNNL 388

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
                D       +        N    +   +      +           E          
Sbjct: 389  FIVGDVKQSIYRFRHADVSVFNKVKEDIAQNAGQNLGMKTNFRSTQSIVESCNTAFCQLM 448

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            ++    + +                 +  K  +      +      D  ++EA +IA  L
Sbjct: 449  DLPKEEICLEHHEGANTGGAKVCLLQVPYKSKDDDLGAKE------DKWQKEAEAIAAYL 502

Query: 379  RMSL------DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
            +  L             A++         ++  L  +GIN  +  G           + +
Sbjct: 503  QQELPKVEPQLRPGASKAILLRAMTHCEILRQTLQGYGINCVVVKGKGFYEQQEVLDILN 562

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            LL  +      + +A  ++         +  L++     E      +           L 
Sbjct: 563  LLAVLHNRYTSLELAGALRSNYFG--LDDATLTQLFWQTENDKPLWDVLQAVGSGELQLN 620

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            L               +S            L   +   + P       +N      ++  
Sbjct: 621  LQPEQQALAMQAAERLRSLRQAAALMALPELFAQLWDELKPEFVLSQQENGPSKLANVKK 680

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              +L                     ++  +T  +  ++ ++    ++A+           
Sbjct: 681  LRRLA--------------------QQYCQTKQASLAEWLQNVKDLRAS----------- 709

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
               +     ++    L I+    S+ L FD +IL  L++ V     +   F  +  +  L
Sbjct: 710  -SSKEPAATVQADDALQIMTIHNSKGLEFDLVILPQLDKSVKGDTASIKYFSGKEGEQGL 768

Query: 673  -NLKTAEKYIGQAAHDFEMANGTRH-------------LIYTRSLREN------NIPTIA 712
              +K  +K +             R              +  TR+ ++           + 
Sbjct: 769  LGIKVPDKEMQLQNSGVYELAKARDSELEEEESRRLLYVAMTRAKKQLLMVGTVAEEKLP 828

Query: 713  SR---------WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
                       W Q+L  +   D+           L     L     Q   ++     PL
Sbjct: 829  EAVIALPAAKGWWQQLQAVYEVDWDKQESSCPWVRLLCADALSPAVVQQGVQQQLALEPL 888

Query: 764  EAQPRT---------YSFSEIKQLINDPYAVYARRILKLDFIP-----HFKKDPDRTDRG 809
               P           ++ S ++  ++     Y +++L +  +          +   +  G
Sbjct: 889  ALAPLPAYAACGRTCFTASALQTYLHCQRQYYYQQVLAVPELEQTVAGEQAHELPASVTG 948

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            ++ H  +                   + +     ++                 +  +++ 
Sbjct: 949  SIVHKALELYNGYNA-----------EAVFAIALDEFAPGAAATQ-----AKSMFDAYIS 992

Query: 870  HEE-KIQSSIEKIFVN--IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
             +  K     +K  +    P +  + + G+      D +   +   + I DYKTG  P+ 
Sbjct: 993  SDLYKSLPKKQKRELEFVQPLQQELAAEGV-----IDLLAFDEDDNMIIVDYKTGTPPEP 1047

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
            +  +     QL+L     K  +      ++V       L+         +      A EL
Sbjct: 1048 DEVKLGYAYQLALY----KDAAEKLYPGKRVVCAELHFLQNMSVWQLPLDKSYLQEAIEL 1103

Query: 987  SEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             E+               E  F        +S     Y +L 
Sbjct: 1104 CEEISGK---------GEEDDFACSCN---ESCAYCHYAYLC 1133


>gi|15677567|ref|NP_274723.1| exodeoxyribonuclease V 125 kD polypeptide [Neisseria meningitidis
           MC58]
 gi|7226975|gb|AAF42066.1| exodeoxyribonuclease V 125 kD polypeptide [Neisseria meningitidis
           MC58]
          Length = 1069

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 106/900 (11%), Positives = 216/900 (24%), Gaps = 86/900 (9%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194
           L    +    LA  LADI D       +W D               W             
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           W  R ++    S         +               + G +   P   +L+  ++ H +
Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             +             W  + E +  +        T   + L   L        D     
Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            +  E          + L    +D++N  +      ++      + ++ A +   E   +
Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSEMAGSVNTGDGSIRIVSAHSPLRELQIL 345

Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424
              L   L E+        A++T +          +          +   +S        
Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNK 480
                L+ L + +    +   +  L++             +  L     A   V    + 
Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDG 465

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYK 538
                 D        +        +P   + + ++       +    +       L T  
Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPKGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLT 525

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                     ++ +W       L+ +   E     ++   E         +++ +    +
Sbjct: 526 DIVRIWRQPATVGEWVARCRDLLETLFQAEADDQKSVQNLENEWVKWQAETELAQFSGQL 585

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                  I  I R +D E+          +     +  R L F  + L GLN+G +P+NT
Sbjct: 586 P--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715
               F           +             E     R  L  +   R+   +     S  
Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699

Query: 716 LQRLLVLGGTDFFDNLKKRGQCY---------------------------LDWTRKLDYT 748
           L  L+           ++  Q                              D+   L  T
Sbjct: 700 LGELIDTVAAMAGIGSRQLAQNLIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQT 759

Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
            + P     +P              E  +   +P  V+ ++ L        +        
Sbjct: 760 PEPPQPFFDQPV-ENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPF 818

Query: 809 -GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
                  I    I+ R      +      +I             +  +W+  F   +   
Sbjct: 819 EPQHADQIAEIYIEARCEGR--DFAQTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873


>gi|9857300|dbj|BAB11938.1| orf3 [Streptomyces griseus]
          Length = 551

 Score =  126 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/505 (12%), Positives = 127/505 (25%), Gaps = 66/505 (13%)

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                    P             A  L   + +    L    T + +     + + W   
Sbjct: 9   ELLARALAEPERLVTHDPAYAHGAQRLGALLRKARELLEGGGTAEEALWALWNGTPWPGR 68

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                            +L         ++      E  +  +       ++  + I  +
Sbjct: 69  LERAALRGGAGGRNADRDLDAVCALFETAA----RAEERTGGRGALNFLEEVDAQDIAAD 124

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
           T+  +  +   + ++    S+ L +  +++ G+ EG+WP    +   L         L  
Sbjct: 125 TLSRRTARPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAE 184

Query: 677 AEKYIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
                   A                L+ T      +     SR+L  L V          
Sbjct: 185 PLTPGALLAEERRLFYVAATRARDRLVVTAVKAPADDGDQPSRFLTELGV--EPRDVTGR 242

Query: 732 KKRGQCYLDWTRKLDYTTKQPHY------------------------------------- 754
            +R         +L  TT  P                                       
Sbjct: 243 PRRPLAVAALVAELRATTVDPAASEALREAAAHRLARLAALTDDEGQPLVPAAHPYRWWG 302

Query: 755 ----KRPKPFPPLEAQPRTYSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                R         QP T S S + QL N      +  R      +            G
Sbjct: 303 LEEPTRSAVPLRDRDQPVTLSGSALDQLANTCALQWFLGR-----EVKADAPATAAQGFG 357

Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            + H ++ + +         ++       + +    +          +         FL 
Sbjct: 358 NVVH-VLADEVASSRTPADLDVLMERLDSVWNGLAFDAPWKSEQEKDQAR--AALERFLH 414

Query: 870 HEEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKK 926
                +             + +E+    + + G  DR++    G   + D+KTG   P K
Sbjct: 415 WHVLDRGGRTPTASEHDFDVTLEAGEYAVRIRGSMDRVEQDAEGRAYVVDFKTGKGAPTK 474

Query: 927 ETAQKLIDPQLSLEAAALKAGSFSQ 951
           +       PQL++   A++ G+  +
Sbjct: 475 DEVATH--PQLAVYQLAVREGAVDE 497


>gi|296314385|ref|ZP_06864326.1| exodeoxyribonuclease V, gamma subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296838944|gb|EFH22882.1| exodeoxyribonuclease V, gamma subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 1069

 Score =  126 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 104/899 (11%), Positives = 216/899 (24%), Gaps = 84/899 (9%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFAHIQKFKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLA-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSAEFQNGAEFEDVRRVLQNY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194
           L    +    LA  LADI D       +W D               W             
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILGLGDDEIWQSKL--------- 171

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           W  R ++    S         +  A            + G +   P   +L+  ++ H +
Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             +             W  + E +  +        T   + L   L        D     
Sbjct: 230 VFVFALNP----SGMHWGNVIEAAQILKGGGDPDLTQTGHPLLASLGKQGRDFFDFLNEM 285

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            +  E          + L    +D++N  +      ++      + ++ A +   E   +
Sbjct: 286 EIEEETPVFEEGGRDTLLHALQTDIQNLKMPSETAGSVNTGDGSIRIVSAHSPLRELQIL 345

Query: 375 AIALRMSLDENKKK----SALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424
              L   L E+        A++T +          +          +   +S        
Sbjct: 346 KDKLLKILHEHPDWQPHYIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNK 480
                L+ L + +    +   +  L++             +  L     A   V    + 
Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDG 465

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYK 538
                 D        +        +P   + + ++       +   ++       + +  
Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTVMFGRFAAFIESLT 525

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                     ++ +W       L+ +          +   E          +    G   
Sbjct: 526 DIVRIWRQPATVGEWVARCRDLLEILFQTGADDQKAVQNLE--NEWVKWQEESTLAGFIG 583

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
           +      I  I R +D E+          +     +  R L F  + L GLN+G +P+NT
Sbjct: 584 QLPQQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715
               F           +             E     R  L  +   R+   +     S  
Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------------LDYTTKQPHYKR 756
           L  L+         N ++  Q +++                                 + 
Sbjct: 700 LGELIDTVAAMTGTNSRQLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQT 759

Query: 757 PKPFPPL-------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR- 808
           P+P  P                  E  +   +P  V+ ++ L        +         
Sbjct: 760 PEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFE 819

Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
                 I    I+ R      +      +I+            +  +W+  F   +   
Sbjct: 820 PQHADQIAETYIEARREGR--DFAQTAARIVAESL---LPSGELGRLWQQDFQTAAKQI 873


>gi|49473710|ref|YP_031752.1| ATP-dependent nuclease subunit A [Bartonella quintana str. Toulouse]
 gi|49239213|emb|CAF25532.1| ATP-dependent nuclease subunit A [Bartonella quintana str. Toulouse]
          Length = 1157

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 102/861 (11%), Positives = 223/861 (25%), Gaps = 118/861 (13%)

Query: 191  ASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARL 245
                  +    L+    +   + L++         + +      I++  +  + P   ++
Sbjct: 351  IYANLKKANGFLDFDDLIERTLHLLQRKGASQWVHYKLDSGLDHILLDEAQDTNPEQWKI 410

Query: 246  MSTVANH--------PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH------ 291
            +  +A           N   +    D       +     ++                   
Sbjct: 411  IQLLAQEFFTGHSQCTNIRTLFAVGDEKQSIYSFQGAAPENFAANGRIIQKKVQQVNQKF 470

Query: 292  ----PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                  YS     D L       +   N        +  + ++       D+   D +  
Sbjct: 471  EKIQLNYSFRSTADVLKSVDLVFETPENYKGLSAENTKTVHEAIRVHSPGDVILWDAISK 530

Query: 348  KIPNIQKCFSDVALIEADNER-EEAISIAIALRMSLDENK------------KKSALITA 394
            +       +  V +   D      A  IA  +   L   +                L+  
Sbjct: 531  ETNEFPDDW-HVTVDHLDTPEVRLAEKIAETVANWLHNEEMLPAKGRLMRASDIMILVRK 589

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                   +   L    I +  +  + L+  +    L +L   + +  D +++A ++K PL
Sbjct: 590  RDQFVLALSRALKLHNIPVAGADRLQLTNHISVRDLMALARFVLQPQDDLSLACVLKSPL 649

Query: 455  AKFGFPEKYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
                  E Y   A    +L         +     D    +     T  +   V  + S +
Sbjct: 650  FALTEDELYQLAAHRTGSLWQSLCMHALSHASFKDAFENLNHY-RTLVDKIPVFEFYSYI 708

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
               DK    +L     +    L  +     +      +        T  ++    +    
Sbjct: 709  LNIDKGRQKILARLGSEANDVLDAFMDYTLTIQKT-GLPGLQAFLETLSESEPEIKREFH 767

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
             N                 +     ++A  +  +D                      I  
Sbjct: 768  QNHEEVRI---------MTVHAAKGLEAAVVFLVD------------------PGTPIWH 800

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
               +  L         L+E           F +++ +  L+              +    
Sbjct: 801  PQHASHLLKVPFFNTQLSEQQNFIWHPNAQFNTKLSEKALSRLKERAEEEYKRLLYVGMT 860

Query: 693  GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
                 ++       +      R   +L+    T     +K   +    W   +  ++  P
Sbjct: 861  RAEDRLFIC---GYSGKRTFPRTWLQLVKKALTPHAIPIKGPAEDIAAWRYCITPSSSIP 917

Query: 753  -----------------------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                                       P    PL     + S     +   +        
Sbjct: 918  INQEVSCAESQTFPPLPDFFFHKVPAEPALPKPLRPSVASLSIEADTEFAPNLKQFSISP 977

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
            +L               + G L H ++  L      K      H +     SH+ +    
Sbjct: 978  VLG----KTKTNRAFSIEYGNLIHLLLQYLPDCIPQKRRDYAQHYLNTKA-SHWNESQKK 1032

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909
              +  IW+     I      + + + S   +  V++   + I      ++G  DR+ + +
Sbjct: 1033 DALRHIWQ-----ILDH--SYLKPLFSEGARAEVSLMGIIKIRGKEQAISGQVDRLYITQ 1085

Query: 910  SGFVDIT--DYKTGDNPKKETAQKLID-PQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
            +    I   D+KTG  P+ E A    D  Q++L    L+A     I   K      I   
Sbjct: 1086 NK---IIFADFKTGIPPENEAAIAPRDLLQMALYRKLLQA-----IHPTKNVQALLIY-T 1136

Query: 967  QKFKIDCITNDKKKYSADELS 987
            ++ KI  + ++K     DE++
Sbjct: 1137 KEAKIFKLPSEKLDALLDEIA 1157


>gi|90415966|ref|ZP_01223899.1| UvrD/REP helicase family protein [marine gamma proteobacterium
            HTCC2207]
 gi|90332340|gb|EAS47537.1| UvrD/REP helicase family protein [marine gamma proteobacterium
            HTCC2207]
          Length = 1147

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 105/841 (12%), Positives = 218/841 (25%), Gaps = 92/841 (10%)

Query: 172  LKNEKYGMWWLLAADFLKIASKYWTERLV----ELNASSPVGYQIALMRAEAE------- 220
            L + +         D L         +L     +          +A + A          
Sbjct: 336  LPDAEIDQSQQKMLDALGFLLPLLAAQLDVIFQQQGQCDYPAITLAALNALEPEAGDGVV 395

Query: 221  ----HLMKGTKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNT 273
                  +      I++     +  A  +L+  +       +G  +    D       +  
Sbjct: 396  SDITLRLDYQLRHILVDEFQDTSAAQIKLLEQLIGGWQPDDGRTLFLVGDAMQSLYGFRN 455

Query: 274  ITEKSTNITSSNTTYSTH--PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                       +        P    +     L I         +        S       
Sbjct: 456  ANVGLFLNAQRHPVGPVQCRPLTLSSNFRSQLGIIEWVNSAFTDAFPAHADISRGAIPYS 515

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-SA 390
                     N   +  +  +              ++ +EA  IA       D    +  A
Sbjct: 516  PSVAVKAADNAQSVSFQGFSGDN-----------HKLDEAAYIAKLCSDLRDHKPDESIA 564

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            ++   R   R +   L    +        PL++ +    L SL  A+    D +A   ++
Sbjct: 565  ILVRGRGHLRSIIPALREAKLFWQAIDITPLASRMPVIDLLSLTRALLSPADKIAWLAVL 624

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
            + P       +  L    N+L       +K +  ++     +L   A+Q + +H+     
Sbjct: 625  RAPFCGLSLGD--LLAVANSLGDNKENPHKPNNAVLAQLIELLGVSASQLHLSHLSQDGQ 682

Query: 511  RLSEEDKELAV-LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
            +  +    L      +     +    + +       G  ++ D   L          D  
Sbjct: 683  QCLQRIVPLLESAWANRGRTNLR--ASVEQLWIDLGGPATLKDSADL---------SDAR 731

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
              L  L   + G T+S   S  +       A + +         DG +      + S + 
Sbjct: 732  SYLDLLENWQTGATVSDWNSFKLAVDKLYAAPSPD---------DGGSDNTDGSQKSVIQ 782

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL--------SRVMQSDLNLKTAEKYI 681
            I+   +++ L FD +IL GL+ G          +         S ++ + L     E   
Sbjct: 783  IMTIHKAKGLEFDHVILPGLSRGSGSDKKQLMRWQQHIDEHSDSSLIMAPLGAHDEEDDS 842

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG------ 735
              +             + TR      +   A+R ++RL + G      N + +       
Sbjct: 843  VYSY------LKREDSLKTRLESTRVLYVAATRAVRRLYLCGAVKQLKNGQWQPTGKTTL 896

Query: 736  --QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY-SFSEIKQLINDPYAVYARRILK 792
                +      LD           +       +  +      +      P        L 
Sbjct: 897  LTPIWKSIETGLDQGLYAVQQSATELADKDSKEVPSLRHIRRLDGQFQSPQRPDTSANLG 956

Query: 793  LDFIPHFKKDP-------DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                                   GT+ H  + +L  + + +        +     +  ++
Sbjct: 957  TPETSAETGSDIDSSLSSRARSMGTVLHRTLKQLANEGVEQWPESRISQLPATWGAQLKE 1016

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAKMAIESIGIHLTGFAD 903
              +                +S L  +         E+              G   T   D
Sbjct: 1017 LGM--LARPDELKSLLDAVNSMLADQRGRWILQHHEQAQCEQALGYRYSDRGHVGTSVID 1074

Query: 904  RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS--FSQIDCRKVANLF 961
            R  + ++G   I DYK     + E+  + I  Q S  +A L   +  +  +    V    
Sbjct: 1075 RTFV-ENGTRWIIDYKLSQPAEGESETQFIVRQSSAYSAQLSHYAKLYRSMQANPVHCAL 1133

Query: 962  Y 962
            Y
Sbjct: 1134 Y 1134


>gi|304386797|ref|ZP_07369064.1| exodeoxyribonuclease V gamma subunit [Neisseria meningitidis ATCC
           13091]
 gi|304339147|gb|EFM05234.1| exodeoxyribonuclease V gamma subunit [Neisseria meningitidis ATCC
           13091]
          Length = 1069

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 103/882 (11%), Positives = 225/882 (25%), Gaps = 63/882 (7%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194
           L    +    LA  LADI D       +W D               W             
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           W  R ++    S         +               + G +   P   +L+  ++ H +
Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             +             W  + E +  +        T   + L   L        D     
Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            +  E          + L    +D++N  +    + ++      + ++ A +   E   +
Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLRELQIL 345

Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424
              L   L E+        A++T +          +          +   +S        
Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNK 480
                L+ L + +    +   +  L++             +  L     A   V    + 
Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDG 465

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLVTYK 538
                 D        +        +P   + + ++       +       +    L T  
Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLETLS 525

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                     +I +W       L+ +   E     ++   E         +++ +    +
Sbjct: 526 DIVRIWRQPATIGEWVARCRDLLETLFQAEADDQKSVQNLENEWVKWQAETELAQFSGQL 585

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                  I  I R +D E+          +     +  R L F  + L GLN+G +P+NT
Sbjct: 586 P--QQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715
               F           +             E     R  L  +   R+   +     S  
Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
           L  L+           ++  Q +++             Y +           RT   + +
Sbjct: 700 LGELIDTVAAMAGIGSRQLAQNWIEQHPLQ---AFSRRYFQEGGRSDGIFGTRTDYATAL 756

Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            Q    P   + + +   + +    +D    +    + N +   +++++  + P     +
Sbjct: 757 GQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP----HI 808

Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +  +     E               +    F +   +I + 
Sbjct: 809 GEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAE 850


>gi|261399984|ref|ZP_05986109.1| exodeoxyribonuclease V, gamma subunit [Neisseria lactamica ATCC
           23970]
 gi|269210447|gb|EEZ76902.1| exodeoxyribonuclease V, gamma subunit [Neisseria lactamica ATCC
           23970]
          Length = 1069

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 106/902 (11%), Positives = 219/902 (24%), Gaps = 90/902 (9%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVIRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191
           L    +    LA  LADI D       +W D      L  L +++    W          
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRLIGLGDDEI---WQSKL------ 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              W  R ++    S         +               + G +   P   +L+  ++ 
Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           H +  +             W  + E +  +        T   + L   L        D  
Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
               +  E          + L    +D++N  +      ++      + ++ A +   E 
Sbjct: 283 NEMEIEEETPVFEEGGRDTLLHALQTDIQNLKMPSETAGSVNTGDGSIRIVSAHSPLREL 342

Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421
             +   L   L E+        A++T +          +          +   +S     
Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIEPYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477
                   L  L + +    +   +  L++             +  L     A   V   
Sbjct: 403 RRQPFFYALECLFDLLESRFEVDKVLALLETAPVLRRFGLTEDDLPLLHDMVADLNVHWG 462

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHILQCITPLV 535
            +       D        +        +P   + + ++       +   D   +    + 
Sbjct: 463 LDGEMRGGTDRLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTDLFGRFAAFIE 522

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           T            ++ +W       L+ +          +   E          +    G
Sbjct: 523 TLSDIARIWRQPATVGEWVARCRDLLEILFQTGADDQKAVQNLE--NEWVKWQEESTLAG 580

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              +      I  I R +D E+          +     +  R L F  + L GLN+G +P
Sbjct: 581 FVGQLPPHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712
           +NT    F           +             E     R  L  +   R+   +     
Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696

Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------------LDYTTKQPH 753
           S  L  L+           ++  Q +++                                
Sbjct: 697 SSLLGELIDTVAAMAGIGSRQLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAAL 756

Query: 754 YKRPKPFPPL-------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
            + P+P  P                  E  +   +P  V+ ++ L        +      
Sbjct: 757 GQTPEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAE 816

Query: 807 DR-GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
                    I    I+ R      + +    +I+            +  +W+  F   + 
Sbjct: 817 PFEPQHADQIAEAYIEARREG--QDFSQTAARIVAESL---LPSGELGRLWQQDFQTAAK 871

Query: 866 SF 867
             
Sbjct: 872 QI 873


>gi|227514156|ref|ZP_03944205.1| ATP-dependent nuclease subunit B [Lactobacillus fermentum ATCC 14931]
 gi|227087527|gb|EEI22839.1| ATP-dependent nuclease subunit B [Lactobacillus fermentum ATCC 14931]
          Length = 1248

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 121/1074 (11%), Positives = 274/1074 (25%), Gaps = 197/1074 (18%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                  +           P +SN+   + +A++I   + + PD+         L +    
Sbjct: 77   SFSRLGWFLCKDDPDYQKPRLSNVGMAMVVAKIIRELKAESPDL---------LKMFRGE 127

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLH----------ALKNEKYGMWWLLAADF---LK 189
            +     A  +   +  ++    +  DL           AL ++  G     +  F   + 
Sbjct: 128  SERQGFATAVTKQLVELQNANIQPADLAPDQETGIIKRALASQAGGGRASQSTVFTDKMT 187

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG-SIPATARLMST 248
            +  + +      +        + A++    E     +   + +    G        ++  
Sbjct: 188  VLYEIYRRFEAAVTTHVTAPDRSAMLLNHLE-AADLSTTHVYLDRFAGEFSAQEQLIVDA 246

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        V   LD                           +  Y  AK    L     
Sbjct: 247  LIQRAADTTVSLILDRDY---------------RGRELPSQNNLYYRSAKQYQDLLNLAT 291

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                +  +   +  +      S       +    D        +      V    A    
Sbjct: 292  QQVGVDVLDPIVLNQPNQRRVSDALVGVEEWMEADARFALPDRLPAPTDQVGFFTAPTRV 351

Query: 369  EEAISIAIALRMSLD---ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +       +   ++T   +  + +     +R  I +      P++T+
Sbjct: 352  AELNRVATKIRQLVATGQYRYRDFLVVTRHLDGYQTMLEPIFSRHQIPVFNDNQRPMATS 411

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLA------------KFGFPEKYLSRAKNALE 472
              ++   +L   +        +  L+K  L             +          A    E
Sbjct: 412  PLATFTAALFKVLKDYYQEADVMELLKTGLLVPETPEELQQEGRAKRNPNTFMTAVYRTE 471

Query: 473  LVALRGNKNSYDIMDLKSLVL----DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
               L+  K      D +   L          K      +W     +++   A+  +    
Sbjct: 472  NYCLKFGKGGRSWFDERPWRLEGEQPESDALKRQNAQINWVKNYIKDELAPALADLQTAT 531

Query: 529  QCITPLVTYKTNKNSTCGNLSISDW------------TKLTVTCLQNVCLDEHRKLPNLW 576
                    +            +  W             +      Q         +  L 
Sbjct: 532  TGRELATKFYQFLLDQGVRHQLYSWAHQAQESGQLTQLRDVQQIWQTFGTLLDEYVTILG 591

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDI---ITRLIDGETVKPKIEKSSTLFILGT 633
             +                      NA  +  I   + +++  E+   +  +   LFI+G 
Sbjct: 592  DQVAPTEQPGQLVAEFADLMNTGFNAGRYAQIPSTLDQVLVSESGMIQDNQRKVLFIMGA 651

Query: 634  LESRLLNFDTLILG-----------GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI- 681
             +  +                    GLN+  +   +  +   +    + L++ +  + + 
Sbjct: 652  TDDVMPEVKASEGLLSDPDRELLKRGLNDDQFLPISGTDQINNEPFLNYLSMLSVTERLY 711

Query: 682  --------------------GQAAH--------------------------DFEMANGTR 695
                                G A H                          D        
Sbjct: 712  MSAPLMSSDDSELTLSPYLKGLARHFNQWDDQNNAPTTDLPDRPNPRASEDDVWSFVAAP 771

Query: 696  HLI---YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             +         R +           R +    T   + L  R     D     +      
Sbjct: 772  AVTMGNLIEVERLSKDTGRKLTSAWRDVARALTRHDEGLTGRLNDIRDGQYAKNEAVPLQ 831

Query: 753  HYKRPKP----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                 +              T S S++++   +PY  + R  L L      +   D++  
Sbjct: 832  PELAARLYTTNRQGQVTNQLTASISQLEKFYQNPYDYFLRYGLHLKKRDELEVSSDKS-- 889

Query: 809  GTLFHNIITELIKKRINKNTPEINHLM--------KQIIDSHFEKE-NLPPHIDIIW--- 856
            GTL H+ +   ++  I++   ++  L+         ++ID  FE+  N    +  +    
Sbjct: 890  GTLNHDALAFFVQSVIDEPDLQLADLVKEEHQGRQAELIDQAFEQAMNQQEELRELAANN 949

Query: 857  ------RHLFHKISHSFLEHE--EKIQSSIEKIFVNIPAK---------------MAIES 893
                    +  ++  +  +    +  Q+  + + V                    +  + 
Sbjct: 950  SRVNLQLQVAKQLITTMAKTLCLQATQTDAQPVAVEKAFGQADWTGESQAAELPALTFDL 1009

Query: 894  IG--------IHLTGFADRIDLLKSGF---VDITDYKT-GDNPKKETAQKLIDPQLSLEA 941
             G        + L G  DR+D LK G      + DYK+         A      Q+    
Sbjct: 1010 TGAGLGEGAKVSLRGRIDRLDELKLGEQTYQLVVDYKSYNKAFDLVDAYAGQALQMLAYL 1069

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
             AL+    +     ++    Y+RL          +  K+ +A+EL E   + + 
Sbjct: 1070 NALQ----AANPGEQLLGSLYLRL-----YVPTVDAGKEGTAEELKEHLYQGIT 1114


>gi|148244358|ref|YP_001219052.1| hypothetical protein COSY_0198 [Candidatus Vesicomyosocius okutanii
            HA]
 gi|146326185|dbj|BAF61328.1| hypothetical protein [Candidatus Vesicomyosocius okutanii HA]
          Length = 826

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/434 (13%), Positives = 138/434 (31%), Gaps = 45/434 (10%)

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            +  + +       + + IL   E+  L FD   + G+             F++  + +  
Sbjct: 422  LTTQIIFQAQASKTNIQILSVSEAHGLYFDEAWVLGMTNQFVSTQLNLPRFITYDISTKH 481

Query: 673  NLKTAEKYIGQ--AAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
            ++   +  +    A +  E  N     +I++ +        + S  ++    +       
Sbjct: 482  HIPHTDYKLIATDAKNTLESLNSIAGKVIFSYAATHLGSKQLPSPLVKFDTSINTNHIQK 541

Query: 730  NLKKRGQCYLD-WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                  +   D  T  L+ T                          +K  +   +  +  
Sbjct: 542  IFPIALESINDTKTTHLEKT------------------QVKSGVCILKDQMACAFKGFI- 582

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELI------KKRINKNTPEINHLMKQIIDSH 842
              L +          +R ++G + HN +  +       K+ +  N  E++ L+   I + 
Sbjct: 583  HRLNIPNFDAPHIGINRLEQGYIIHNTLQYIYQKITSKKQLLALNNKELDKLILNTIKAA 642

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
              +         I +    ++ HSF+  ++        +       + I ++   +    
Sbjct: 643  L-RHYPSSSFKKIEKLRLSRLIHSFIAVDKLR-EDFYILKTEQSITINIANLEFKI--RL 698

Query: 903  DRIDLLKSGFVDITDYKTGDNPKKETAQKLID-PQLSLEAAA--LKAGSFSQIDCRKVAN 959
            DR+D + +G   I DYKT            I  PQL + A    ++  +F ++   K+  
Sbjct: 699  DRLDQMSNGDKIIFDYKTSSTSIYNWCDTAISKPQLPIYAITNNVQGAAFIELTSHKIN- 757

Query: 960  LFYIRLKQKFKIDCITNDKKKY--SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEK 1017
              +  L +        +  K    S ++  +     L       QNG    I+ +  ++ 
Sbjct: 758  --FKGLSEDSDSLPKQSKYKGKCQSWNKQLKIWQNILNTASFDFQNG----IAAVLPNKN 811

Query: 1018 SNIQSEYDHLARVA 1031
            +    ++    RV 
Sbjct: 812  ACDYCKFYLFCRVK 825


>gi|325205568|gb|ADZ01021.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           M04-240196]
          Length = 1069

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 107/899 (11%), Positives = 219/899 (24%), Gaps = 84/899 (9%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194
           L    +    LA  LADI D       +W D               W             
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           W  R ++    S         +  A            + G +   P   +L+  ++ H +
Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             +             W  + E +  +        T   + L   L        D     
Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            +  E          + L    +D++N  +    + ++      + ++ A +   E   +
Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLRELQIL 345

Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424
              L   L E+        A++T +          +          +   +S        
Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH-PLAKFG---FPEKYLSRAKNALELVALRGNK 480
                L+ L + +    +   +  L++  P+ +       +  L     A   V    + 
Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRHFGLTEDDLPLLHDMVADLNVRWGLDG 465

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLVTYK 538
                 D        +        +P   + + +        +       +    L T  
Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQGVSAWYADVNQTALFGRFAAFLETLT 525

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                     +I +W       L+ +   E      +   E         +++ +    +
Sbjct: 526 DIVRIWRQPATIGEWVARCRGLLKTLFQAEADDQKAVQNLENEWVKWQAETELAQFSGQL 585

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                  I  I R +D E+          +     +  R L F  + L GLN+G +P+NT
Sbjct: 586 P--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715
               F           +             E     R  L  +   R+   +     S  
Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------------LDYTTKQPHYKR 756
           L  L+           ++  Q +++                                 + 
Sbjct: 700 LGELIDTVAAMAGIGSRQLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQT 759

Query: 757 PKPFPPL-------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR- 808
           P+P  P                  E  +   +P  V+ ++ L        +         
Sbjct: 760 PEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFE 819

Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
                 I    I+ R      +      +I             +  +W+  F   +   
Sbjct: 820 PQHADQIAEIYIEARREGR--DFAQTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873


>gi|289759336|ref|ZP_06518714.1| helicase [Mycobacterium tuberculosis T85]
 gi|289714900|gb|EFD78912.1| helicase [Mycobacterium tuberculosis T85]
          Length = 953

 Score =  125 bits (314), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 87/888 (9%), Positives = 194/888 (21%), Gaps = 108/888 (12%)

Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIP 240
             L        ER+             +  R  A        ++     +++     +  
Sbjct: 81  AELVPLLDALGERMHAGKVMDFAMQMASAARLAATSPQVGRDLRRRYRVVLLDEYQDTGH 140

Query: 241 ATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
           A   ++S++      +G  +    D       W   +  +    +++   S      + +
Sbjct: 141 AQRVVLSSLFGGGVDDGLALTAVGDPIQSIYGWRGASATNLPRFTTDFPLSDGTPAPVLE 200

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
           LL       + ++    +S E   RS+ +                      P        
Sbjct: 201 LLTSWRNPPQALRVANGISAEARRRSVAVRALR------------------PRPDAPPGA 242

Query: 359 VALIEADNEREEAISIAIALR------MSLDENKKKSALITADRNLARRVKLELTRFGIN 412
           V      + + E   IA  LR       +       +A++      A  +   L   GI 
Sbjct: 243 VRCALLPDVQAEREWIADHLRMRYQRAEADGVKPPTAAVLVRRNADAAAIADTLRARGIP 302

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            ++     L +    + + ++L  +       A   ++  P  + G  +      +    
Sbjct: 303 AEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMRVLTGPRWRLGARDLAALWRRALTL 362

Query: 473 LVA------LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                          +         + D I+   +                     L   
Sbjct: 363 SGESPSTASPESIAMAASADADNPCLADAISDPGSAEGYSVAGYGRIGALAGELSALRGR 422

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK---- 582
           +   +  LV            +  S          +++                      
Sbjct: 423 LGHSLPDLVAEVRRVLGVDCEVRASAPVSGGWAGPEHLDAFADVVAGYAERASARSSEAS 482

Query: 583 --------------------TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                                  ++    ++  +   A  +EW  +    +        +
Sbjct: 483 VAGLLAYLDVAEVVENGLPPAELTVACDRVQVLTVHAAKGLEWQVVAVAHLSRGVFPSTV 542

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
            +SS L     L   L              +     A    LS  +     L    +   
Sbjct: 543 SRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAVADRKQLSDKISEHRRLLDRRRVDE 602

Query: 683 QAAHDFEMANGTRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
           +    +         +             P   S +L  L  +                 
Sbjct: 603 ERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEFLCELKDIIDRSAAAGDPCGVVEQW 662

Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF------------------SEIKQLIND 781
                 D             +P      R                      +        
Sbjct: 663 ASAPAGDERNPLCDNAIEAVWPADPLAARRGDVERGAALVAAAMSADLPGSTTDIDHPPR 722

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT------------P 829
           P        +                RG   H  ++ L++   +               P
Sbjct: 723 PGDAPWSTDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGARQRLMCRLPKRP 782

Query: 830 EINHLMKQII---------DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
           + +  +                       P           +++           ++   
Sbjct: 783 DPHAWLGDAFHAWVQQFYGAELLFDLGDLPGAADREVGDPEELAALQRAFTASSWAARTP 842

Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
             V +P +M I      + G  D + +   G   + D+KTG  P    A +    QL++ 
Sbjct: 843 AAVEVPFEMPIGDT--VVRGRIDAVFVDPDGGATVVDWKTGKPPHGPAAMRQAAVQLAVY 900

Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
             A    +        V   FY  ++    +           A  L++
Sbjct: 901 RLAWA--ALRGCPTSSVRTAFYY-VRSGITVVPDELPAPGELAMLLTD 945


>gi|118475773|ref|YP_891587.1| hypothetical protein CFF8240_0385 [Campylobacter fetus subsp. fetus
            82-40]
 gi|118414999|gb|ABK83419.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus
            82-40]
          Length = 786

 Score =  125 bits (314), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 138/402 (34%), Gaps = 56/402 (13%)

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
              + + ++G LESR  N+D +I+   N+ + PK + K  FLS  ++    L + +     
Sbjct: 431  GGAEVTVMGVLESRSGNYDGVIIIDFNDDIVPKRSQKEMFLSSSVRKKAGLISHQDRENL 490

Query: 684  AAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                +E      + +  +     ++  +I SR+ +         +  N          + 
Sbjct: 491  QRFYYESLINSAKKVSISY---LSDEESILSRFARDFSFRIDEKYTQN---------AYL 538

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
              L     +   ++   +   +      SFS +   +      Y R IL +     F KD
Sbjct: 539  NSLKSGGIKLSLEKKDIYLRHDFFATELSFSRLNTYLACKRKYYYRYILGIKEYRGFDKD 598

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
               +  G+  H+ + E   K   K        +K+     F+K      ID +   +F  
Sbjct: 599  IS-SHLGSTIHSALQEYFSKFKTK-------FVKKEFLELFKKY--ENTIDTLDSEIFKA 648

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
                F E +    +S          ++  E  G+ +TG  DRID        + DYK+G 
Sbjct: 649  GLAKFEESQNTHFNSG-FSVFECEKELKNEFCGVKITGKIDRIDKSAD-TFMLIDYKSGT 706

Query: 923  NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
             PKK         QLS   A     S S          FY  +K ++K      +     
Sbjct: 707  VPKK-------SFQLSFYEALFGHNSIS----------FYYDIKNEYKFIPNDTN----- 744

Query: 983  ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
                +++  + +  +    +N           +EK+     Y
Sbjct: 745  ----TDELAQCINGLKDEFKNEVC-----FDRNEKACQYCAY 777


>gi|289747015|ref|ZP_06506393.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
 gi|289687543|gb|EFD55031.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
          Length = 489

 Score =  125 bits (314), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/473 (12%), Positives = 130/473 (27%), Gaps = 81/473 (17%)

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
            A+    ++ +T L            +  + +L    +    +D +++ GL +G+WP    
Sbjct: 18   ASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVP 77

Query: 660  KNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
            +   L            ++       L   E+ +   A            + + +    +
Sbjct: 78   RGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGH 137

Query: 708  IPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR--------- 756
               + S +   +        +            L     +                    
Sbjct: 138  EAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRD 197

Query: 757  --------------PKPFPPLEAQPRTYS---------------FSEIKQLINDPYAVYA 787
                          P   P         S                S ++ L + P    A
Sbjct: 198  CAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLA 257

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
             R    +           +  G++ H +  E       ++  ++   + + +  H     
Sbjct: 258  ERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHLPFGA 305

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFA 902
                 +         +  +F++   + +S + K+ V +    A+E        I L G A
Sbjct: 306  QWYSAN--ELARHRAMIQAFVQWRAQSRSELTKVGVEVDIDGALEDGSGQARKIRLRGRA 363

Query: 903  DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
            DR++   +G + I D KTG  P  +   +    QL++   A+  G     D    A L Y
Sbjct: 364  DRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGARLVY 422

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013
            +       +     D        L+  +      +V  L        FI+   
Sbjct: 423  VGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQFIARRN 468


>gi|148927466|ref|ZP_01810969.1| UvrD/REP helicase [candidate division TM7 genomosp. GTL1]
 gi|147887190|gb|EDK72657.1| UvrD/REP helicase [candidate division TM7 genomosp. GTL1]
          Length = 933

 Score =  125 bits (314), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 86/868 (9%), Positives = 225/868 (25%), Gaps = 99/868 (11%)

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSI 239
               L      +   +            + ++ A          ++     I++     + 
Sbjct: 97   LRALAHVYYEYLVAMQANTLYDFDDMILRVVHALEVFGELRFTLQEQYQYILVDEFQDTN 156

Query: 240  PATARLMSTVANHP---NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
             A  R++  +  +        +L   D       +      +              Q+  
Sbjct: 157  GAQLRILLNLTENEVNNGRPNILIVGDDDQAIYSFQGAEISNILTF----------QHRF 206

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
                         +    N  +                D  +     + +   P+     
Sbjct: 207  R--------NPAIITLADNYRSAPAILENARKVITQGQDRLETHMKSLDKTLTPHKPVTK 258

Query: 357  SDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINID 414
            S V L E   +  E + I   ++  LD  +N  + A++T   +    +        I ++
Sbjct: 259  SRVELAELPTKNHEYLWIVNQIKQRLDAGQNAHEIAVLTRTHSEMTHLLPYFHHADIEVN 318

Query: 415  ISAGIPLSTTLHSSIL----TSLLNAIFKLNDFM--AIATLVKHPLAKFGFPEKYLSRAK 468
                  +      ++L     +L++   +  D +   +  L+ HP  +      +    +
Sbjct: 319  YERRDNVLDLPPIAMLEQLARALVDIAEQRFDDLNGRLPELLSHPSWRLPPLTLWKLGLE 378

Query: 469  NA--LELVALRGNKNSYDIMDLKSLVLDR--------IATQKNNTHVPHWQSRLSEEDKE 518
                         +    + D+   ++          +    +     H +     ++ E
Sbjct: 379  AHNSRRHWVEIMLETKGPLKDIAEWLIVAAHRSMTAPLEEALDLLLGTHERQVPDNDEVE 438

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                        I+PL  +    ++                        E R    + + 
Sbjct: 439  PTTRPSHQTEGFISPLRNHFFPHDAL-----------------------EKRPHLYILYL 475

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIIT-RLIDGETVKPKIEKSSTLFILGTLESR 637
               + +                + +E+ID+         + +P  E +  + ++   +S+
Sbjct: 476  NALRRIRFKMRDYQPERLLHLKDFVEFIDLHRKTHTPITSPRPASEDAEGICLMTAHKSK 535

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RH 696
             L F+T+ +  +    W         +     +       E    +    F       R 
Sbjct: 536  GLEFETVFVVNVTHSTWGSGARARGRMIPYPANLPLAPAGETDDERLRLFFVXMTRAKRE 595

Query: 697  LIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
            LI + +L++    PT+ + +L             +  +  +   +   +           
Sbjct: 596  LIISYALQDLVGRPTLRAEFLATDNWHVIQPALPDTPESQKEAAE--HQWYENVLSVSDG 653

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLIN----DPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                      +    S + +   I+     P A   + +L+       +        G  
Sbjct: 654  SLDKLLKPTLERYKLSATHLNNFIDVTSGGPQAFLLQNLLRFP-----QARLPNAAFGLA 708

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
             H  +           +      +    ++   ++ L       +      +  +FL   
Sbjct: 709  IHKALQRAHAHFNATGSRRPVEDILHDFETALGEQRLSNLDHEHFMQRGSDVLQTFLA-- 766

Query: 872  EKIQSSIEKIFV-NIPAKMA-IESIGIHLTGFADR--IDLLKSGFVDITDYKTGDNPKKE 927
                 S ++  +         +   G  LTG  D   ID   +  + + DYKTG   ++ 
Sbjct: 767  -ARYESFQESAIPERSFGSQGVLIEGAALTGVLDLMLID-DANKTITVVDYKTGKAARRW 824

Query: 928  TAQKLIDP--------QLSLEAAALKAGS-FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                 I+         QL      ++    F          L ++   ++ +I  +    
Sbjct: 825  QGSSDIEKIKLHKYKQQLMFYKLLVEHSRDFGGRFSVGSGVLEFVEPTREGEIVRLETQY 884

Query: 979  KKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                 +      +    + +  L   + 
Sbjct: 885  DIAELERFKRLIVAVW-KRIQSLDFPDT 911


>gi|72160928|ref|YP_288585.1| DNA helicase [Thermobifida fusca YX]
 gi|71914660|gb|AAZ54562.1| putative DNA helicase [Thermobifida fusca YX]
          Length = 1108

 Score =  125 bits (314), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 98/1027 (9%), Positives = 265/1027 (25%), Gaps = 142/1027 (13%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGD---VVEEKFTADLLLSYNLN 100
             V     T++A  EL     +     + + ++P     G+        +   L+  + L 
Sbjct: 65   QVLGLTFTRKAAAELAERVRKRLDQLRGAGVVPDDVLDGEPTVATYNAYATRLVGDHALR 124

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---- 156
              +    R++  A +   + +++             +      + + LA+ LA+ +    
Sbjct: 125  EAIEPTTRIITPA-IAWQFVHRVVSTYDGPMDAVTSAPATVVHDVLALAQELAEHLCTPD 183

Query: 157  ------DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
                  D +     + +   AL  +   +      + L    + + +   E         
Sbjct: 184  DVRAYGDWLRERAAQLKKTPALVRDLLAV--QRHREQLLPLLEQFAQLKAEREVMDYSDQ 241

Query: 211  QIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                 R      E   + +     +++     +  A   L+ ++    NG  V    D  
Sbjct: 242  VALAARIAQRHPEVGRIERERYAVVLLDEYQDTSHAQLVLLQSLFG--NGHPVTAVGDPC 299

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                 W   +  + +    +          + +L                          
Sbjct: 300  QSIYGWRGASAGNLSRFPVDFPEKPDRPAPVRQLSTSFRNG-----------------ER 342

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
            ++  +    +       D+        +     V       E EEA  IA  +  +L E+
Sbjct: 343  ILEVAKRIAEPLRAAARDVPVLYPGPARAGRGRVTCALLRTETEEAEWIAEQIDRALRES 402

Query: 386  KK----------------------KSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
             +                        A++   R     ++  L   GI +++     L  
Sbjct: 403  AEHHTAPDGLPWPEQEHRGPLSYGDIAVLCRKRAQFPVIRRALEERGIPVEVVGLGGLIE 462

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                  + + L  +        +A ++  P  + G  +      + A EL          
Sbjct: 463  VPEVRDIVATLRVLHDPTAANELARILTGPRWRLGPRDLVAL-NQRAKELAEEARRDLRG 521

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
            +  + +    D +     +          + +D            Q +  L         
Sbjct: 522  EAAEARVDEEDPLRQTVLDLTAEAGSLLDALDDLGPPERYSATGYQRLQALSEELRTLR- 580

Query: 544  TCGNLSISDWT----KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
            T  +  + D      ++    ++        +       +     +  FS   +T +   
Sbjct: 581  TRISQPLPDLIMEVERVLGLDIEVGARPGRDQSAARADLDAFVDAAVRFSGSTDTPTLSA 640

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              A  ++        G     ++  S+T+ ++    ++ L +  +++ GL+ G +P    
Sbjct: 641  FLA--YLTSAEDTEHGLEPGERVGSSNTVKLMTVHAAKGLQWPMVVIPGLSRGQFPGVPK 698

Query: 660  KNPFLSR------------------------VMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
                 +                                     + + +      +A    
Sbjct: 699  TVKGWTGKAASLPFALRGDRDSLPELADVTVQEIKQFTAAERARELMEQRRLAYVAVTRA 758

Query: 696  HLIYTRSLRENNIPTI----ASRWLQRLLV-----LGGTDFFDNLKKRGQC--------- 737
                  +       T      S +L+ +       +G    + +    G+          
Sbjct: 759  AFSLVCTGHWWGQETQRSRGPSEFLEEIREVCETGVGQVALWTDPPDEGEPNPQLVADNS 818

Query: 738  --YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
              +   T +     ++      +       +        + +   +       R ++L  
Sbjct: 819  VVWPPQTDERRDAAERAAALVARYRNGEWERELALMNRALLRPAANRRIRDWARDVELLL 878

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                +++           + +T      + ++   +   +++ +                
Sbjct: 879  RHRDQEEGAPRVIEVELPDHLTVSALVSLARDPAALAQQIRRPLPRPPAPHARRGTAFHT 938

Query: 856  WRHL------------FHKISHSFL-----------EHEEKIQSSIEKIFVNIPAKMAIE 892
            W                   +               + E+ + +    + V +P +  I 
Sbjct: 939  WLERRFGQETLIDPHELPGAADETATGDADLDELQRQFEQSVWADRVPLEVEVPFETIIG 998

Query: 893  SIGIHLTGFADRIDLLK-SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
                 + G  D +         ++ D+KTG  P  E  ++    QL+    A    +   
Sbjct: 999  DR--LVRGRMDAVFHDPEDDVYEVVDWKTGRLPATERERRAAAVQLAAYRVAWARIADIP 1056

Query: 952  IDCRKVA 958
            ++  + A
Sbjct: 1057 LERVRAA 1063


>gi|254805469|ref|YP_003083690.1| exodeoxyribonuclease V gamma chain [Neisseria meningitidis alpha14]
 gi|254669011|emb|CBA07403.1| exodeoxyribonuclease V gamma chain [Neisseria meningitidis alpha14]
          Length = 1069

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 106/882 (12%), Positives = 228/882 (25%), Gaps = 63/882 (7%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194
           L    +    LA  LADI D       +W D               W             
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILGLGDDEIWQSKL--------- 171

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           W  R ++    S         +               + G +   P   +L+  ++ H +
Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             +             W  + E +  +        T   + L   L        D     
Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            +  E          + L    +D++N  +    + ++      + ++ A +   E   +
Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLRELQIL 345

Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424
              L   L E+        A++T +          +          +   +S        
Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH--PLAKFGFPEKYLSRAKNALELVALRGNKNS 482
                L+ L + +    +   +  L++    L +FG  E  L    + +  + +R   + 
Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWGLDG 465

Query: 483 YDIMDLKSLVLDRIATQK----NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                   L   + A ++                        V       +    L T  
Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPESGNPMWQDVSAWYADVNQTALFGRFAALLETLS 525

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                     ++ +W       L+ +   E      +   E         +++ +    +
Sbjct: 526 DIVRIWQQPATVGEWVARCRDLLETLFQTEADDQKAVQNLENEWVKWQAETELAQFSGQL 585

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                  I  I R +D E+          +     +  R L F  + L GLN+G +P+NT
Sbjct: 586 P--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715
               F           +             E     R  L  +   R+   +     S  
Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
           L  L+           ++  Q +++             Y +           RT   + +
Sbjct: 700 LGELIDTVAAMAGIGSRQLAQNWIEQHPL---QAFSRRYFQEGGRSDGIFGTRTDYATAL 756

Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            Q    P   + + +   + +    +D    +    + N +   +++++  + P     +
Sbjct: 757 GQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP----HI 808

Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +  +     E               +    F +   +I + 
Sbjct: 809 GEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAE 850


>gi|88856786|ref|ZP_01131440.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1]
 gi|88813954|gb|EAR23822.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1]
          Length = 1086

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 117/856 (13%), Positives = 224/856 (26%), Gaps = 114/856 (13%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGS 238
            +   L   +  + ++                +             +     +++     +
Sbjct: 230  SLAPLLDLAVQYAQQKRAQGLLEFSDQVALALEVAERSQDVVDHYQDRYRVVLLDEYQDT 289

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
                 RL+   A       V+   D H     W   +  +    S + T +    Y    
Sbjct: 290  SVVQTRLL---ARLFGNHPVMAVGDPHQSIYGWRGASAANLARFSRDFTETADAHYF--A 344

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
            L          +     +   +  RS V  +S      +     D       +I +    
Sbjct: 345  LSTSWRNATSVLDAANVIVQPLSARSPVRVESLGARPEAPAGAVDAY--YYEHIDEEARG 402

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
            VA+  A     +A +       +       +A++   R+   R    L    I   +   
Sbjct: 403  VAMWFARALAPQAWNHYNPDPDAAAPEPPTAAILFRRRSDMDRFATALGAHEIPYHVLGI 462

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
              L +T     L S L  I   +    +  L+    A++    + L    +    +  R 
Sbjct: 463  GGLLSTPEIVDLVSALTVIHDPSAGSELIRLLSG--ARWSIGTRDLHALADLSRWLLSRS 520

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                    ++K  V D +A   + + V        +   E  V            L   K
Sbjct: 521  VTQQALSDEVKQRVKDSVAVDDSASIVDA-----LDFVGEAPVSHSQLENFSPEGLSRLK 575

Query: 539  TNKNSTCGNLSISDW-TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE-TGS 596
                      S +       V  L+   L +   + +    +    L +   ++     S
Sbjct: 576  DAAKQMAFFRSRAGLELGDLVRLLEQELLLDIEVVASRPQAQGMANLYAFHDELAGFLAS 635

Query: 597  CIKANAIEWIDIITRLIDGETVKPK--IEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
               AN   ++  + R    + + P+    ++ T+ +L    S+ L +D + +  L +G  
Sbjct: 636  DDHANLSSFLSWLRRAAQQDMMGPRSDDAEAGTVQLLTIHASKGLEWDLVAVPRLVDGEV 695

Query: 655  PKNTAKNP-----------------------FLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
            P  + +                         + +   QSD +    E     A       
Sbjct: 696  PAASREGKGWVSFGKLPFAFRGDAAELPELEWENAQYQSDFDGSLKEFKAALADRHQAEE 755

Query: 692  NGTRHLIYTRSL----------RENNIPTIASRWLQRLLV-------------------- 721
                ++  TR+              + P   S +LQ L                      
Sbjct: 756  RRLGYVAITRARDNLLLTGSFWSSRSKPQAPSTFLQELEERELIGELPSDPVNDENPTLN 815

Query: 722  -----LGGTDFFDNLKKRGQCYLDWTRKLDYTTK----------QPHYKRPKPFPPLEAQ 766
                 L   D   N +   +         D                   R          
Sbjct: 816  DVVDPLWPFDPLGNRRATVEAAAQLVTTADPGADGLWSHEIELLVAERNRAASEGQRTPL 875

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
            P+    S  K  I DP AV       +   P+       T  GT FH  +        + 
Sbjct: 876  PQRIPASRFKDYIADPEAVALSLRRPMPEKPYR-----ATRLGTQFHEWVEARFGTSASA 930

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
             T +   L                  D+       K+S      E    ++ + + V I 
Sbjct: 931  ETLDALSLEID-------------GADVDGAADAEKLSQLQATFERSAWATRKPVDVEIE 977

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
              +        +    D +        +I D+KTG  P+     +    QL+L   A   
Sbjct: 978  IHVPFGDR--VIICKIDAVYADGD-RYEIVDWKTGRAPRDAADLEAKQLQLALYRLAYAQ 1034

Query: 947  GSFSQIDCRKVANLFY 962
              +  I   ++   FY
Sbjct: 1035 --WKGIAPERIDAAFY 1048


>gi|323466408|gb|ADX70095.1| ATP-dependent helicase/deoxyribonuclease subunit B [Lactobacillus
           helveticus H10]
          Length = 1160

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 110/902 (12%), Positives = 243/902 (26%), Gaps = 154/902 (17%)

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
           DL  +               L+I    + E +     S+    Q+ L    A++      
Sbjct: 138 DLDNIDETNLDQETKSKIHDLRIIYDAFIEEIAGK-FSTKNEVQVQLNDILAKNSE-LKN 195

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
                   +         +  +        +                 +      +    
Sbjct: 196 ASFYFCDFSHFSLQEMLTIQILMRKAKNVTL---------------AFKTRLGNINPKAE 240

Query: 288 YSTH---PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
              +    Q ++ +L+ FL  +  D                V S+  +P + +     + 
Sbjct: 241 AGDYDYVIQQTIRRLVSFLQERDMDY---------------VASEFPIPSEPTPREILNS 285

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARR 401
           L  +  +       V L++AD+   EA  +A  +   +   +   +   ++  D      
Sbjct: 286 LWTETVSKVDELKQVQLVKADSRYAEAYFVARTIYQQVALNNYRYRDFLILAPDLKEYET 345

Query: 402 VKL-ELTRFGINIDISAGIPLSTTLHSSI---LTSLLNAIFKLNDFMAIATLVKHPLA-- 455
                L +  I         +       +   L +L +         ++  ++K  L   
Sbjct: 346 YLTPILRQNNIPFFNDLQQEMKYHPLVVLIENLFNLRDLKENPFQTQSMLAILKTHLLIP 405

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
            +   E       + LE   L    N       K       A       +    +    E
Sbjct: 406 SWYKEEAEYIHDVDELENFVLAHGINHNLWK--KHFADFVSAEVIRLDKIDEEVA----E 459

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI------SDWTKLTVTCLQNVCLDEH 569
              L   LVD +    T L   K ++ +             ++  +       N    + 
Sbjct: 460 IDRLRGYLVDKVTNLFTKLEQEKDSQKALTIFFDFLTKNGIAERLEQWRDAANNAGDLQQ 519

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
            + P   ++   + L    +   E     K +  E+ +++       T          + 
Sbjct: 520 AQQPEQLWDLLIQLLKDYLAINPE-----KFDLDEFFNMLISAFKEATFSQIPSTLDAVN 574

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYI 681
           +      +   +  + + G   G  P    K  FL+    + L         L+  ++  
Sbjct: 575 LSEMGMVQTSGYKQVFIIGATSGNLPSIEKKPGFLTTENLNQLQSSFESDAYLEDNQRLN 634

Query: 682 GQAAHD---FEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTD-FFDNLKKRGQ 736
               +      +A     +  +  +   +N     S + QRL   G  +    +L ++ Q
Sbjct: 635 NLDQNYQFGLSLALAQDRVYISYPVLNASNEKLDPSIYYQRLQDYGAPEFSQHDLPEKMQ 694

Query: 737 CYL-----------------------DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--- 770
             L                            L  T K    K        +   +     
Sbjct: 695 ELLSFITNPDASLGYLAYINSNTSDEAIDELLKITQKYLPQKVKAVLDASDFDNQPEDIG 754

Query: 771 --------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                         S S+++    + Y  +    LKL      + + D    G  FH   
Sbjct: 755 EDLAAELYGKNLYSSVSQLETFYENSYEYFLTYGLKLRRR--LENEFDVIQAGNYFHETF 812

Query: 817 TELIKKRINK----------NTPEINHLMKQII-DSHFEKENLPPHIDIIWRHLFH---- 861
             L+K+   +             +  + ++ +I D     + +    +    H       
Sbjct: 813 DRLVKRLNEQHIDLADLSSVELEQQLNQVRDVIKDESKYAQLMNDPFNQYLFHCLDHTTS 872

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPA---------KMAIESIG----IHLTGFADRIDLL 908
           K++ ++ +   +  + +   +  +            + I  +     ++L G  DR+DL 
Sbjct: 873 KVARNWCKSLAE--TPLRAKYSELSFGLDQKIKGISLDIPDLPGNHQVNLRGKIDRVDLA 930

Query: 909 ----KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS--FSQIDCRKVANL 960
               K   +  + DYK+             I  Q+      L   +  F++ D   +   
Sbjct: 931 NFAEKDQVLAQVIDYKSSAKKFDLGMFYNGIALQMISYLDVLTNNNRFFAEEDKLSLLGA 990

Query: 961 FY 962
           FY
Sbjct: 991 FY 992


>gi|325128741|gb|EGC51604.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           N1568]
          Length = 1069

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 105/899 (11%), Positives = 216/899 (24%), Gaps = 84/899 (9%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194
           L    +    LA  LADI D       +W D               W             
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           W  R ++    S         +  A            + G +   P   +L+  ++ H +
Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             +             W  + E +  +        T   + L   L        D     
Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            +  E          + L    +D++N  +    + ++      + ++ A +   E   +
Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVNTGDGSIRIVSAHSPLRELQIL 345

Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424
              L   L E+        A++T +          +          +   +S        
Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNK 480
                L+ L + +    +   +  L++             +  L     A   V    + 
Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWGLDG 465

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLVTYK 538
                 D        +        +P   + + ++       +       +    L T  
Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLETLS 525

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                     ++ +W       L+ +   E      +   E         +++ +    +
Sbjct: 526 DIVRIWQQPATVGEWVARCRDLLETLFQTEADDQKAVQNLENEWVKWQAETELAQFSGQL 585

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                  I  I R +D E+          +     +  R L F  + L GLN+G +P+NT
Sbjct: 586 P--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715
               F           +             E     R  L  +   R+   +     S  
Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------------LDYTTKQPHYKR 756
           L  L+           ++  Q  ++                                 + 
Sbjct: 700 LGELIDTVAAMAGIGSRQLAQNLIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQT 759

Query: 757 PKPFPPL-------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR- 808
           P+P  P                  E  +   +P  V+ ++ L        +         
Sbjct: 760 PEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFE 819

Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
                 I    I+ R      +      +I             +  +W+  F   +   
Sbjct: 820 PQHADQIAETYIEARREGR--DFAQTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873


>gi|313896370|ref|ZP_07829923.1| putative ATP-dependent nuclease subunit B [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975169|gb|EFR40631.1| putative ATP-dependent nuclease subunit B [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 900

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 80/698 (11%), Positives = 185/698 (26%), Gaps = 70/698 (10%)

Query: 63  EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
              E+    +  L      G          +       P +S+I   + L  +++     
Sbjct: 52  ALAEVLTSGAGFL-QAYVFG-FRRFARQVLIETGGAHLPRISDIGMRILLKDILIKRAGD 109

Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
           L    + ++                  + L   I  ++      + L     +       
Sbjct: 110 LSAFARSVHKR-------------GFTETLGSTIAELKRYRIHPDILRTAAEQAATGRLP 156

Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                L I  +    R+      +    ++  +  +           I + G     P  
Sbjct: 157 QKLADLSIVMEDLAARME--GRYTDQTDRMERLARQLGTASFLRDAEIWVDGFDFFNPQE 214

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             +   + +      V   ++                 +     T  T       + +  
Sbjct: 215 LAVFRALFHTAGAIHVTLTME--------GRRDGGHVRVNLPENTQDTGLFSRGYRAMRD 266

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
           LD    ++      S ++        +S L      +   D +             + L+
Sbjct: 267 LDQILAEIDPQAASSIQLMEVQRRTHRSSLAAIEGHLFGHDRIVP------CGDGALRLV 320

Query: 363 EADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAG 418
           EA N R EA + A  +     E     ++ A+   D      +       +GI   + A 
Sbjct: 321 EAANPRLEAEAAAADILRLTREQGYRYREIAVFVRDMPCYAELLTLTFADYGIPCYLDAK 380

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA----------KFGFPEKYLSRAK 468
            P +    + +L +     ++   +  +   ++              K   P      A 
Sbjct: 381 RPSTHHPLAELLRAAAWTAWRGWGYETMFRALRTGFFPVLGASEEETKVLAPSGDWQEAV 440

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
           + LE   L     +                  ++ +     +    E+      +   I 
Sbjct: 441 DRLENYCLAYGIRTQRQWTATEDWDFARRAIASDAYESEENAARIAEEI-ALDAVRRRIA 499

Query: 529 QCITPLVTYKTNKN--STCGNLSISDWTKLT-----VTCLQNVCLDEHRKLPNLWFEEEG 581
             +  L    +     +     S+ +          +   +     E R        +  
Sbjct: 500 APLALLKERLSRAQGTARTRTQSLYELLMELDVPRILETWRTAADAEGRLADAAAHRQIW 559

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            +  +LF +++ETG   + +A ++ +I+   +D   +         + I    ++ L   
Sbjct: 560 TSCMNLFDQMVETGGDEEISAHDYEEILGDGLDALDIALIPPGLDHVTIASFDQNSLAGI 619

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK---------------TAEKYIGQAAH 686
            T+ + G N G  P+  A+   LS   +  +N                   E+   +   
Sbjct: 620 RTVYIVGANAGTMPRAGAQQGVLSDAERLSMNEMFHALHEGAAPEIFGGGREQSFLERYR 679

Query: 687 DFEMANGTRH-LIYTRS-LRENNIPTIASRWLQRLLVL 722
            +      R  L  + +    +      S  + RL  L
Sbjct: 680 LYRGFTAAREYLWVSYALAGSDGSALSPSPLIARLRRL 717


>gi|218768734|ref|YP_002343246.1| exodeoxyribonuclease V [Neisseria meningitidis Z2491]
 gi|121052742|emb|CAM09085.1| exodeoxyribonuclease V [Neisseria meningitidis Z2491]
          Length = 1069

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 109/900 (12%), Positives = 222/900 (24%), Gaps = 86/900 (9%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194
           L    +    LA  LADI D       +W D               W             
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           W  R ++    S         +  A            + G +   P   +L+  ++ H +
Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             +             W  + E +  +        T   + L   L        D     
Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            +  E          + L    +D++N  +    + ++      + ++ A +   E   +
Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLRELQIL 345

Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424
              L   L E+        A++T +          +          +   +S        
Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH-PLAKFG---FPEKYLSRAKNALELVALRGNK 480
                L+ L + +    +   +  L++  P+ +       +  L     A   V    + 
Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRHFGLTEDDLPLLHDMVADLNVRWGLDG 465

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLVTYK 538
                 D        +        +P   + + +        +       +    L T  
Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQGVSAWYADVNQTALFGRFAAFLETLT 525

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                     ++ +W       L+ +   E      +   E         +++ +    +
Sbjct: 526 DIVRIWRQPATVDEWVARCRDLLETLFQVEGDDQKAVQSLENEWVKWQAETELAQFSGQL 585

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
             +    I  I R +D E+          +     +  R L F  + L GLN+G +P+NT
Sbjct: 586 PLH--TVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715
               F           +             E     R  L  +   R+   +     S  
Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699

Query: 716 LQRLLVLGGTDFFDNLKKRGQCY---------------------------LDWTRKLDYT 748
           L  L+         N ++  Q +                            D+   L  T
Sbjct: 700 LGELIDTVAAMTGTNSRQLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQT 759

Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
            + P     +P              E  +   +P  V+ ++ L        +        
Sbjct: 760 PEPPQPFFDQPV-ENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPF 818

Query: 809 -GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
                  I    I+ R      +      +I             +  +W+  F   +   
Sbjct: 819 EPQHADQIAETYIEARREGR--DFAQTAARIGAESL---LPSGELGRLWQQNFQTAAKQI 873


>gi|284043265|ref|YP_003393605.1| ATP-dependent nuclease subunit B-like protein [Conexibacter woesei
           DSM 14684]
 gi|283947486|gb|ADB50230.1| ATP-dependent nuclease subunit B-like protein [Conexibacter woesei
           DSM 14684]
          Length = 986

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 110/922 (11%), Positives = 228/922 (24%), Gaps = 134/922 (14%)

Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184
            ++ +    + L      A               +E      + L A             
Sbjct: 86  RVVAEAIASARLQALAPIAGTRGFLHAAGAFTAELERTLLTPQRLTAAVRAL--PDAPPT 143

Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244
              +      +   L  L       +    + A           P++  G          
Sbjct: 144 LHEVAAIYDRYARGLERLGRVDAELFAWRALDALRARKEVWGDTPVVFYGFDDFTTLERD 203

Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
            + T++      +    +                T    S          +L    D   
Sbjct: 204 AIETLSRVVGAEV---TVSLTYEPGRAAFAGRARTFAELSQIATEVQELPALDDWYDEAG 260

Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                                                  + E       +    V L+ A
Sbjct: 261 RAPL-----------------------------HALERGLFEPAAARDAEAGDAVRLLVA 291

Query: 365 DNEREEAISIAIALRMSLDE--NKKKSALITADRNLAR-RVKLELTRFGINIDISAGIPL 421
             ER E   +A  +   L +    ++ A++      +   V+     + I   +   +PL
Sbjct: 292 GGERAEIELVAATVLELLGDGVPGEEIAVVLRTPARSASLVEQVFGAYAIPHTLDWRVPL 351

Query: 422 STTLHSS--ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
           + T      +  +    +        +   ++ P               + LEL   R  
Sbjct: 352 AHTALGRGLLALARCALLPADARPADLLAYLRTP------GRLQRLELADRLELTVRR-- 403

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                    ++L+    A +        W  R  +  +  A      +L  +        
Sbjct: 404 ---------RALLSMEEARRAWEEARGGWPLRELDRLRGAAADGPAALLGALAREARTLF 454

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
                     +    +     L  +             E            ++     ++
Sbjct: 455 VAPHRGQARVLDAAEEADARALSALLRALEELGELAAAEPRRAAELLEPEALLAALGELE 514

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
            +                      +   + +   L  R   FDT+I+ GL EG +P+   
Sbjct: 515 VSLG-----------------ATAREGAVLVADPLAIRARRFDTVIVCGLQEGEFPRPAH 557

Query: 660 KNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE---NNIPT 710
             PFLS  ++ +LN      L   E  +    + F             S R+   +  P 
Sbjct: 558 PEPFLSDDVRRELNAVAGLRLPLREDALADERYLFYATASRPRRRLILSCRDADEDGNPA 617

Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYL---DWTRKLDYTTKQPHYKRPKPFP------ 761
           + S ++  +  L       +       +      T       +     R  P P      
Sbjct: 618 LPSFFVDDVRALLRELPERHRPLSAVTWPLDAAPTDAERERAEALAAPRELPHPIGSLSE 677

Query: 762 ---PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
               L  Q    S   +++    P   +    L+      F+ DP+   RG+  H+++  
Sbjct: 678 AATALLRQREVLSAGALERYARCPVRWFVESELQ---PERFEPDPEAMARGSCIHSVLER 734

Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLP------PHIDIIWRHLFHKISHSFLEHEE 872
            + +            ++Q++     +E                 H         L HE 
Sbjct: 735 TLARVSWPIAVAELPAIEQVVREVVAEEASAFTLGRGAAAQAAAAHEIAADVLRLLAHEA 794

Query: 873 KIQSS--IEKIFVNIPAKMA---------------------IESIGIHLTGFADRIDLLK 909
           + ++        + +   M                        +  + L G  DR+DL  
Sbjct: 795 EAEAGGAFRPAELELRFGMGDESALPALELTSAEPGDAAGGAPAEPLRLRGVIDRVDLDG 854

Query: 910 SGFVDITDYKTGDNPKKETAQKLID---PQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
           +G   + DYK+G         K       Q++L   A++      +  R+ A   Y  L+
Sbjct: 855 AGRALVRDYKSGRRQPSWPVAKWASEDQLQVALYMVAVRE-----LMGRQPAGGVYQPLR 909

Query: 967 QKFKIDCITNDKKKYSADELSE 988
            +             + D + +
Sbjct: 910 GEDLRARGVVRDDVNAGDLVVD 931


>gi|184154512|ref|YP_001842852.1| ATP-dependent nuclease subunit B [Lactobacillus fermentum IFO 3956]
 gi|251764592|sp|B2GEY3|ADDB_LACF3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|183225856|dbj|BAG26372.1| ATP-dependent nuclease subunit B [Lactobacillus fermentum IFO 3956]
          Length = 1245

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 121/1074 (11%), Positives = 275/1074 (25%), Gaps = 197/1074 (18%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                  +           P +SN+   + +A++I   + + PD+         L +    
Sbjct: 74   SFSRLGWFLCKDDPDYQKPRLSNVGMAMVVAKIIRELKAESPDL---------LKMFRGE 124

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLH----------ALKNEKYGMWWLLAADF---LK 189
            +     A  +   +  ++    +  DL           AL ++  G     +  F   + 
Sbjct: 125  SERQGFATEVTKQLVELQNANIQPADLAPDQETGIIKRALASQAGGGRASQSTVFTDKMT 184

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG-SIPATARLMST 248
            +  + +      +        + A++    E     +   + +    G        ++  
Sbjct: 185  VLYEIYRRFEAAVTTHVTAPDRSAMLLNHLE-AADLSTTHVYLDRFAGEFSAQEQLIVDA 243

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        V   LD                           +  Y  AK    L     
Sbjct: 244  LIQRAADTTVSLILDRDY---------------RGRELPSQNNLYYRSAKQYQDLLNLAT 288

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                +  +   +  +      S       +    D        +      V    A    
Sbjct: 289  QQVGVDVLDPIVLNQPNQRRVSDALVGVEEWMEADARFALPDRLPAPTDQVGFFTAPTRV 348

Query: 369  EEAISIAIALRMSLD---ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +       +   ++T   +  + +     +R  I +      P++T+
Sbjct: 349  AELNRVATKIRQLVATGQYRYRDFLVVTRHLDGYQTMLEPIFSRHQIPVFNDNQRPMATS 408

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLA------------KFGFPEKYLSRAKNALE 472
              ++   +L   +        +  L+K  L             +          A    E
Sbjct: 409  PLATFTAALFKVLKDYYQEADVMELLKTGLLVPETPEELQQEGRAKRNPNTFMTAVYRTE 468

Query: 473  LVALRGNKNSYDIMDLKSLVL----DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
               L+  K      D +   L          K      +W     +++   A+  +    
Sbjct: 469  NYCLKFGKGGRSWFDERPWRLEGEQPESDALKRQNAQINWVKNYIKDELAPALADLQTAT 528

Query: 529  QCITPLVTYKTNKNSTCGNLSISDW------------TKLTVTCLQNVCLDEHRKLPNLW 576
                    +            +  W             +      Q         +  L 
Sbjct: 529  TGRELATKFYQFLLDQGVRHQLYSWAHQAQESGQLTQLRDVQQIWQTFGTLLDEYVTILG 588

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDI---ITRLIDGETVKPKIEKSSTLFILGT 633
             +                      NA  +  I   + +++  E+   +  +   LFI+G 
Sbjct: 589  DQVAPTEQPGQLVAEFADLMNAGFNAGRYAQIPSTLDQVLVSESGMIQDNQRKVLFIMGA 648

Query: 634  LESRLLNFDTLILG-----------GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI- 681
             +  +                    GLN+  +   +  +   +    + L++ +  + + 
Sbjct: 649  TDDVMPEVKASEGLLSDPDRELLKRGLNDDQFLPISGTDQINNEPFLNYLSMLSVTERLY 708

Query: 682  --------------------GQAAHDFEM--ANGTRHLIYTRSLRENNIPTIASRWLQRL 719
                                G A H  +    N                      ++   
Sbjct: 709  MSAPLMSSDDSELTLSPYLKGLARHFNQWDDQNNAPTTDLPDRPNPRASEDDVWSFVAAP 768

Query: 720  LVLGGTDFFDNLKKRGQ------CYLDWTRKLDY-------------------TTKQPHY 754
             V  G         +         + D  R L                         P  
Sbjct: 769  AVTMGNLIEVERLSKDTGRKLTSAWRDVARALTRYDEGLTGRLNDIRDGQYAKNEAVPLQ 828

Query: 755  KRPKPFPPLEAQPR------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                       +        T S S++++   +PY  + R  L L      +   D++  
Sbjct: 829  PELAARLYTTNRQGQVTNQLTASISQLEKFYQNPYDYFLRYGLHLKKRDELEVSSDKS-- 886

Query: 809  GTLFHNIITELIKKRINKNTPEINHLM--------KQIIDSHFEKE-NLPPHIDIIW--- 856
            GTL H+ +   ++  I++   ++  L+         ++ID  FE+  N    +  +    
Sbjct: 887  GTLNHDALAFFVQSVIDEPDLQLADLVKEEHQGRQAELIDQAFEQAMNQQEELRELAANN 946

Query: 857  ------RHLFHKISHSFLEHE--EKIQSSIEKIFVNIPAK---------------MAIES 893
                    +  ++  +  +    +  Q+  + + V                    +  + 
Sbjct: 947  SRVNLQLQVAKQLITTMAKTLCLQATQTDAQPVAVEKAFGQADWTGESQAAELPALTFDL 1006

Query: 894  IG--------IHLTGFADRIDLLKSGF---VDITDYKT-GDNPKKETAQKLIDPQLSLEA 941
             G        + L G  DR+D LK G      + DYK+         A      Q+    
Sbjct: 1007 TGAGLGEGAKVSLRGRIDRLDELKLGEQTYQLVVDYKSYNKAFDLVDAYAGQALQMLAYL 1066

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
             AL+    +    +++    Y+RL          +  K+ +A+EL E   + + 
Sbjct: 1067 NALQ----AANPGKQLLGSLYLRL-----YVPTVDAGKEGTAEELKEHLYQGIT 1111


>gi|256825724|ref|YP_003149684.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689117|gb|ACV06919.1| DNA/RNA helicase, superfamily I [Kytococcus sedentarius DSM 20547]
          Length = 1119

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 115/1062 (10%), Positives = 257/1062 (24%), Gaps = 180/1062 (16%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV------VEEKFTADLLLSYNL 99
             V     T++A  EL           + +   + +  ++          ++  ++  + L
Sbjct: 63   QVLGLTFTRKAAAELSERLAARLD--ALVRAGVLAAEELQPPVVSTYNAWSGGIVAEHGL 120

Query: 100  NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
               +    R+L          + L        P    S+  +    + LA  + D +   
Sbjct: 121  RLGIEPGARVLSAVEAWQGVTD-LVTTWPGELPPGLTSIEGAVQGVLTLAGQMGDHLVSG 179

Query: 160  ETEEKKWEDLHALKN-----EKYGMWW-----LLAA---DFLKIASKYWTERLVELNASS 206
            E  E++ + L  L            +               L    + W E   E     
Sbjct: 180  EQVERELDRLDELLGTVAPNRSGRPYADVLKAQATLAVRRALVPMVQRWQELKAERQVLE 239

Query: 207  PVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                     ++A   A    + +     +++     +  A   ++  V        V   
Sbjct: 240  FSDQTQLSARLARGHAAVGRVERARSRAVLLDEFQDTTEAQLSVVRGVFAGDPTLSVTAV 299

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
             D H     +   + ++      +   +         L          ++    V+  + 
Sbjct: 300  GDPHQSIYGFRGASARTMESFVESFDATE------RHLSTSWRNSGRVLRVANRVAEPLR 353

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
             RS +   +  P   +D                    V         +EA + A  L   
Sbjct: 354  ERSALDLPALRPRPGTDEGPP----------------VTASRFGTPADEARAGAAWLAEH 397

Query: 382  LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                +  +A++   R+    V   L   G+  ++     L      + + +LL  +    
Sbjct: 398  WAPGELGAAVLCRKRSQFPVVTEALEAAGLPYEVVGLGGLLLVPEVADVRALLGVVDDPT 457

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
                +  L+  P A+ G  +     A                +    +        T  +
Sbjct: 458  RGDHLMRLLTGPAARLGAADLVGLHAWRRELERRWGVRSPGDEGSAERRDHQQLAVTLLD 517

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                P        + + ++ L    +      +      ++   G L++    +     +
Sbjct: 518  AVLTPVEAGWTGPQGEAVSDLARARLASLAEAVTQCLGAQHRGVGELALVA-EQALGVDV 576

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            +     +          E      + F++       + A  + W+    +          
Sbjct: 577  ELASRTDVPPWRARAHLEAFHEHVATFAEAGTREPSLSA-LMGWLSAAEQHEGALEPGAV 635

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGL----------------NEGVWPKNTAKNPFLS 665
                S + +L    S+ L +D + + GL                 E V    T    +  
Sbjct: 636  EVDPSAVQVLTVHASKGLEWDAVWVPGLVAGTFPSGTGTVRPEGPEWVARPATDSAWWAP 695

Query: 666  RVMQSDLNLKTA------------------------------EKYIGQAAHDFEMANGTR 695
                    L+                                E+ + +      +A    
Sbjct: 696  ASGMLPFALRGDAPSLPEWSLPADPDKADFETAMKDFARANGERGLQEERRLAYVAVTRA 755

Query: 696  HLIY---TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
              +    +     +  PT  S +L  +L       +  +        +       T   P
Sbjct: 756  RRLLHLSSAVWGTSAAPTPTSDFLLEVLDDCAPGTWVEMPPTDPVPENPVTATPRTALWP 815

Query: 753  HYKRPKPFPPL----------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
              +                    +    S      L  D      R    +  +   +  
Sbjct: 816  RPEAEDLEHHAHAAAAAEVGLALETAPGSEPGWTGLAEDSREHLLRFRQDVRLLLAERDA 875

Query: 803  PD--------------------------------------RTDRGTLFHNIITELIKKRI 824
             D                                         +GT FH  +        
Sbjct: 876  ADQPDIEPLRHVSTSSLVALARDPGARRFLARPVPTPPARAARQGTDFHAWVESQWAPAR 935

Query: 825  NKNTPEINHLMKQIIDSH------------------FEKENLPPHIDIIWRHLFHKISHS 866
              + P++    +   D+H                     +               +    
Sbjct: 936  LFDVPDLPQESQGEWDAHEERDAQEERAAPGAPQDGLALDGPRLRTRAPGEADLRRFQEH 995

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI------DLLKSGFVDITDYKT 920
            F+  E    S     +V +P +  +   G+ + G AD I      +        + D+KT
Sbjct: 996  FVASEW---SGRTPTWVELPLQTNVA--GLTVRGRADAIFPATRAERDAGLEWVVVDWKT 1050

Query: 921  GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
              +P++         QL+    A    ++  ID   V   F+
Sbjct: 1051 SSSPREAEVGAA-AVQLACYRQAFA--AWRGIDPATVGGAFF 1089


>gi|325204677|gb|ADZ00131.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           M01-240355]
          Length = 1069

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 103/885 (11%), Positives = 230/885 (25%), Gaps = 69/885 (7%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191
           L    +    LA  LADI D       +W D      + +L +++    W          
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              W  R ++    S         +               + G +   P   +L+  ++ 
Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           H +  +             W  + E +  +        T   + L   L        D  
Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
               +  E          + L    +D++N  +    + ++      + ++ A +   E 
Sbjct: 283 NEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLREL 342

Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421
             +   L   L E+        A++T +          +          +   +S     
Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477
                   L+ L + +    +   +  L++             +  L     A   V   
Sbjct: 403 RRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLV 535
            +       D        +        +P   + + ++       +    +       L 
Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTAMFGRFAAFLE 522

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           T            ++ +W       L+ +   E      +   E         +++ +  
Sbjct: 523 TLSDIVRIWRQPATVDEWVGRCRGLLETLFQAEADDQKAVQNLENEWVKWQAETELAQFS 582

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
             +       I  I R +D E+          +     +  R L F  + L GLN+G +P
Sbjct: 583 GQLP--QQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712
           +NT    F           +             E     R  L  +   R+   +     
Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696

Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
           S  L  L+           ++  Q +++             Y +           RT   
Sbjct: 697 SSLLGELIDTVAAMAGIGSRQLAQNWIEQHPL---QAFSRRYFQEGGRSDGIFGTRTDYA 753

Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
           + + Q    P   + + +   + +    +D    +    + N +   +++++  + P   
Sbjct: 754 TALGQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP--- 806

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
             + +  +     E               +    F +   +I + 
Sbjct: 807 -HIGEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAE 850


>gi|215405208|ref|ZP_03417389.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 02_1987]
          Length = 498

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 59/473 (12%), Positives = 129/473 (27%), Gaps = 81/473 (17%)

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
            A+    ++ +T L            +  + +L    +    +D +++ GL +G+WP    
Sbjct: 27   ASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVP 86

Query: 660  KNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
            +   L            ++       L   E+ +   A            + + +    +
Sbjct: 87   RGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGH 146

Query: 708  IPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
               + S +   +        +            L     +                    
Sbjct: 147  EAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRD 206

Query: 766  QP--------------------------------------RTYSFSEIKQLINDPYAVYA 787
                                                     T + S ++ L + P    A
Sbjct: 207  CAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLA 266

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
             R    +           +  G++ H +  E       ++  ++   + + +  H     
Sbjct: 267  ERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHLPFGA 314

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFA 902
                 +         +  +F++   + +S + K+ V +    A+E        I L G A
Sbjct: 315  QWYSAN--ELARHRAMIQAFVQWRAQSRSELTKVGVEVDIDGALEDGSGQARKIRLRGRA 372

Query: 903  DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
            DR++   +G + I D KTG  P  +   +    QL++   A+  G     D    A L Y
Sbjct: 373  DRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGARLVY 431

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013
            +       +     D        L+  +      +V  L        FI+   
Sbjct: 432  VGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQFIARRN 477


>gi|313888221|ref|ZP_07821895.1| conserved hypothetical protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845911|gb|EFR33298.1| conserved hypothetical protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 870

 Score =  125 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 68/477 (14%), Positives = 158/477 (33%), Gaps = 43/477 (9%)

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI--KANAIEWIDIITRLIDGETVKPKIE 623
              E      L  ++            +E         +  +++ I+ + ++   +     
Sbjct: 407  ALERDPESPLIRDQRFLEELDDVFIKMEALREFYKSIDLYDFVLILKKYMEKIRLDEVQ- 465

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVMQSDLNLKTAEKYI 681
                + I     +   +F  LIL G +E       +       S+ +  +L L       
Sbjct: 466  NLEGIEISSQASNYYRDFKNLILIGYDETYQDDKRSNFIYKQESQEVMEELGLVKDNFNR 525

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
              A   +++      L+   S R+       S+ L  L++    +  +  K      L  
Sbjct: 526  DYAYLIYDILV-AEKLLILCSDRDKG----FSKLLNSLILDLDLEVEEVKKIYETDKLYR 580

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
            TR++   +      +       +   R YS ++   L + P      R+ ++  +    +
Sbjct: 581  TREVKENSYLIDAGQLGEI-NKKISERPYSVTDFDILKDCPRRFLFERVYRIGKLEKDYE 639

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
            D    D G  +H ++    K+    +  ++  ++ ++   +    +     D +      
Sbjct: 640  DRFYIDAGEKYHKVLETYFKQEEGFDEDKLLKIILEV--ENLGDFDDLSFFDKLSVLNSQ 697

Query: 862  KISHSFLEHEEKIQS--SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
            KI   +++ + + Q+    +  +     +  I   G+ + G  DRID+L    +   DYK
Sbjct: 698  KILGDYIKKDLEGQAKYGYKPAYFEEGFETEIN--GLRIRGRIDRIDVLGDKEIL-MDYK 754

Query: 920  TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK- 978
                 KK+   +L   Q+ L A A       +   +K++   Y  +K+      I N + 
Sbjct: 755  RSGVKKKKEIDELKSFQMPLYAIA------RKKLGKKISMANYGSIKRGEIATVIKNSEF 808

Query: 979  -----------KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
                             +L  K    ++ + + +++G+    S            +Y
Sbjct: 809  LPKDDKGRYYMTDEDLSDLLNKFEAEIVRLTSNIRSGDYESTS-------DCKNCDY 858


>gi|319407899|emb|CBI81553.1| ATP-dependent nuclease subunit A [Bartonella schoenbuchensis R1]
          Length = 1151

 Score =  125 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 97/828 (11%), Positives = 217/828 (26%), Gaps = 119/828 (14%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGST 236
             + A +LKI +    +    L+    +   + L++        ++ +      I+I  + 
Sbjct: 343  QICATYLKIYAD-LKKANGLLDFDDLIERTLYLLQRKGASQWVQYKLDRGIDHILIDEAQ 401

Query: 237  GSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
             + P   +++  +A         H N   +    D       +     ++          
Sbjct: 402  DTNPEQWQIIQLLAQEFFADYSQHTNIRTIFAVGDEKQSIYSFQGAEPENFAKNGRMFQK 461

Query: 289  STH----------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                           YS     D L       +   N           + +        +
Sbjct: 462  QVQRINQKFEKIQLHYSFRSTADILKGVDLVFETPENYKGLSADNVKTVHEPVRINSPGE 521

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREE-----AISIAIALR---------MSLDE 384
            +   D +  +   +   +  + +   D          A +IA  L            L  
Sbjct: 522  IILWDTISKETNKLPDDW-HLTVDHLDTPEIRLANKIAATIANWLHSGEMLPAKGRLLRA 580

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
            +     +          +   L    + +  +  + L++ +    L +L   + +  D +
Sbjct: 581  SDILVLVRKRHDQFVPALSRALKLHNVPVAGADRLQLTSHISVRDLMALAQFVLQPQDDL 640

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            ++A ++K PL        Y   AK   +L         +     D    +     T  + 
Sbjct: 641  SLACVLKSPLFALSEDALYHLAAKRTGSLWQSLCTHASSHVSYKDAFENLSKY-RTFVDK 699

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
              V  + S +   DK    +L     +    L  +     +                 L+
Sbjct: 700  MPVFEFYSHILNNDKGRQKILARLGSEANEILDAFMDYTLTIQKTG-----LPGLQAFLE 754

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
             +  ++      L      +    +    +     +++  + ++D               
Sbjct: 755  TLSANKPEIKRELD-----QNHEEVRIMTVHAAKGLESAVVFFVD--------------- 794

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                   I  T      +F T  L G    +W  N   +       +  L+         
Sbjct: 795  ---PGSAIWDT--RYTPHFFTFPLNGRQALIWRPNAQFDT----KFKKALSYLKERAEEE 845

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                 +         +       +      + WL+ L+          +K   +    W 
Sbjct: 846  YKRLLYVGMTRAEDRLIVC--GYSGQQENPNTWLK-LVKKALQPHTVAIKDPTEDVAAWR 902

Query: 743  ------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN---------D 781
                          LD   +        P P           +  K L           D
Sbjct: 903  YSITPSSTLINKEILDEGNQTLP-----PLPDFFHHKMPLEPALPKPLRPSVASLFIDVD 957

Query: 782  PYAVYARRILKLDFI--PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
              +   +  L +  +            + G L H ++  L +    +        +    
Sbjct: 958  AESFPNQTHLSISPVLGEKNTNKIFTIEYGNLVHRLLQYLPECPPQQRFDYAQRYLNI-- 1015

Query: 840  DSHFEKENLPPHI-DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                 K +  P I          K+  +   H + + S   +  V++   + I      +
Sbjct: 1016 -----KASHWPEIQREKALQQVCKLLEN--PHLKSLFSDNSRAEVSLTGTLKIHGKEQII 1068

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKE-TAQKLIDPQLSLEAAALK 945
            +G  DR+ + +   V   D+KTG  P+ E T       Q++L    L+
Sbjct: 1069 SGQIDRLCVTQD-SVLFADFKTGIPPEDETTIAPNYLLQMALYRKLLQ 1115


>gi|150401988|ref|YP_001329282.1| UvrD/REP helicase [Methanococcus maripaludis C7]
 gi|159906221|ref|YP_001549883.1| UvrD/REP helicase [Methanococcus maripaludis C6]
 gi|150033018|gb|ABR65131.1| UvrD/REP helicase [Methanococcus maripaludis C7]
 gi|159887714|gb|ABX02651.1| UvrD/REP helicase [Methanococcus maripaludis C6]
          Length = 946

 Score =  125 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 116/955 (12%), Positives = 291/955 (30%), Gaps = 138/955 (14%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
           P +   R +I  ++   LVE   YDP        + +   T +A  EL+    +  G + 
Sbjct: 29  PGTGKTRTIIEKVV--YLVEELGYDPN------KLLVVTFTIKAADELKDRLRKRLGDRV 80

Query: 73  TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
             +  I ++    +            + P   N   + E+   +  +     D     + 
Sbjct: 81  ETM-QISTIHSFCQRML--------EMFPEYHNYGSVFEVMDELDQFIYV--DNNYRGFG 129

Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
            + +   +     I     L +  +++   +     L    + K     L   + L  + 
Sbjct: 130 LNGIEERLETGKRIRFVDKLTNFYNLLTENDIDPIALKTYYSGKRS---LKTEELLTESY 186

Query: 193 KYWTERLV--ELNASSPVGYQ-----IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
           +Y+   L   +         Q     + L   +A + ++     I +     + P    +
Sbjct: 187 EYYEAELDKTDPKKLDFAMLQKQFYHMLLNNEDALNSVREMFDYIFVDEYQDTNPIQDAI 246

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           +  +A       V+   D       +   + ++        +     +  + KL +    
Sbjct: 247 IRLIAEPKFNITVV--GDEDQSIYGFRGASVENFRQFLERYSGPEKIKAHMIKLEENFRS 304

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
             E V                  K   P  T + +      +    +        LI ++
Sbjct: 305 PEEIVDAFD--------------KFMGPHRTFEKKIISKNGHYSDPV--------LIVSE 342

Query: 366 NEREEAISIAIALRMSLD----ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
           +  EE+I IA  +   +     +    + L  + RN A  +  EL    I   +     L
Sbjct: 343 SPEEESIKIAEWIEKLITKHNVDYGDIAVLFKSVRNHANELVDELMERNIPYVVYGDSSL 402

Query: 422 STTLHSSILTSLLNAIFKLN------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                   +   +  I +            + +L+ + +             +  +E + 
Sbjct: 403 IDQPEIRSVIHAMACINEYELNEKVSRNRKLMSLLDYDILGSDLLNLD----EKTVEKLD 458

Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            RG  + +  +     + ++    K+   + + ++  +++ K+  + +   ++     L 
Sbjct: 459 YRGEPHKFCDVYNYEGLKNQGIATKDIDTLINIKNIRNKDVKKPQLDIFYELMDATGYLR 518

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                        +            +   + E  K                        
Sbjct: 519 RLFEASKDEADKYNAEKAELQLKNLAKFTTILEKFKKNT--------------------- 557

Query: 596 SCIKANAIEWIDIITRLIDG-ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                +   +I ++T++ D         E    + I+   +++ L F  ++LGG+ E  +
Sbjct: 558 --GSNSFKSFIYLLTKIPDNKLEDAASPEGQDVVKIMTIHQAKGLEFPVVVLGGVTERRY 615

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
               A +  ++   Q  +N    +         +   +  + L+   ++  +      S+
Sbjct: 616 G-ARADDRLVNIPKQFMMNKHDVDFDEEVRRVFYVGMSRAQKLLTISAI--DGRNRKMSK 672

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
           ++  +               G+         D+                  +    ++S 
Sbjct: 673 FIGEIGDYKFISPSAFTATFGED--------DHYVPVD-------------EKIRMTYSS 711

Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
           +   ++ P+  Y   +L        ++       G++ HN + +L    +++        
Sbjct: 712 VNYYMDCPFRFYLYYVLGFVTPEWERQ-----IYGSIIHNCLKKL-HIMMSEGKNISIRD 765

Query: 835 MKQIIDSHFEKENLPPHIDII--WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
           +  I+D + ++EN   + + +      +HK +  F+          E + V  P      
Sbjct: 766 IMGIVDKYCKEENTKKYRNSVIDLVRDYHKNAKEFI---------GEIVDVERPFTYI-- 814

Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK-LIDPQLSLEAAALKA 946
           +  + + G AD +   K+G + I D+K+     K+  +   ++ QL     AL  
Sbjct: 815 NSDLVVNGQADLVIRNKNGELCILDFKS---MTKKGIESTNVEIQLQTYGMALSK 866


>gi|325138694|gb|EGC61246.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           ES14902]
          Length = 1069

 Score =  125 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 104/885 (11%), Positives = 231/885 (26%), Gaps = 69/885 (7%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191
           L    +    LA  LADI D       +W D      + +L +++    W          
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              W  R ++    S         +               + G +   P   +L+  ++ 
Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           H +  +             W  + E +  +        T   + L   L        D  
Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
               +  E          + L    +D++N  +    + ++      + ++ A +   E 
Sbjct: 283 NEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLREL 342

Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421
             +   L   L E+        A++T +          +          +   +S     
Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477
                   L+ L + +    +   +  L++             +  L     A   V   
Sbjct: 403 RRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLV 535
            +       D        +        +P   + + ++       +    +       L 
Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTAMFGRFAAFLE 522

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           T            ++ +W       L+ +   E      +   E         +++ +  
Sbjct: 523 TLSDIVRIWRQPATVDEWVGRCRGLLETLFQAEADDQKAVQNLENEWVKWQAETELAQFS 582

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
             +       I  I R +D E+          +     +  R L F  + L GLN+G +P
Sbjct: 583 GQLP--QQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712
           +NT    F           +             E     R  L  +   R+   +     
Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696

Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
           S  L  L+         N ++  Q +++             Y +           RT   
Sbjct: 697 SSLLGELIDTVAAMTGTNSRQLAQNWIEQHPLQ---AFSRRYFQEGGRSDGIFGTRTDYA 753

Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
           + + Q    P   + + +   + +    +D    +    + N +   +++++  + P   
Sbjct: 754 TALGQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP--- 806

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
             + +  +     E               +    F +   +I + 
Sbjct: 807 -HIGEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAE 850


>gi|296169028|ref|ZP_06850690.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
            BAA-614]
 gi|295896287|gb|EFG75946.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
            BAA-614]
          Length = 638

 Score =  125 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 81/659 (12%), Positives = 168/659 (25%), Gaps = 102/659 (15%)

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
               +AG PLS    +  L ++L A     D      L+  P+           R      
Sbjct: 3    AAPAAGGPLSEEPAARALLTVLAATADGLDGERALALLTGPIGGVDPVSLRQLRRTLQRA 62

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
                          D   L+ D +A             +      + A            
Sbjct: 63   HPDRAPG-------DFADLLADTLAGAAPPVGPQFRPVQRVRAVLDAAARCHRAGQDPRY 115

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
             L                S   +  ++  +       +   +L        ++  +    
Sbjct: 116  TL----------WAAWHRSGLQRRWLSAAERGGPAGAQATRDLDAVTALFDITDQYV--- 162

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
                   A+    +D +  L      +  +     + +L    +    +D +++ GL EG
Sbjct: 163  --SRTSGASLRGLVDHVAALHLPGVRQEPVSTVEQVRVLSAHAALGHEWDLVVIAGLQEG 220

Query: 653  VWPKNTAKNPFLSRVMQSDL------NLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRE 705
            +WP    +   L      D+      +       + +       A    R  +   ++  
Sbjct: 221  LWPNTVPRGGVLGTQRLLDVLDGVTGDASVRAPLLAEERRLLVAAMGRARRRLLVTAVDG 280

Query: 706  N-----NIPTIASRWLQRLLVLG--------------------------------GTDFF 728
            +         + S +   +                                      D  
Sbjct: 281  DPGGADGEAALPSTFYYEVAQWAGDDADAAASQPVSAPRVLSAAALVGRLRGVVCAPDGT 340

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR--------TYSFSEIKQLIN 780
             +   R        R                  P+             T + S ++ L +
Sbjct: 341  VDDADRACAATQLARLARAGVAGADPASWHGLVPVSTAEPLCGGDDAVTLTPSTLQMLND 400

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             P    A R    +          R+  G+L H ++ E       +   E+   + +   
Sbjct: 401  CPLRWLAERHGGTNPR------ALRSTIGSLLHALLAE-----PGRTESELLAELDR-AW 448

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGI 896
             H   E                +  +FLE   + + ++ ++ V +    A+    +   +
Sbjct: 449  RHLPFEAEW--HSANELARHRAMIEAFLEWRAQTRGALTEVGVEVEIDGALAASGDRGEV 506

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             L G  DR++   +G + I D KTG  P  +   +    QL++   A+  G         
Sbjct: 507  RLRGRVDRLERDAAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVDAGTEPG 565

Query: 957  VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013
             A L Y+       +            D L+  +      +V           F++   
Sbjct: 566  GARLVYLGKTGASGVTE-------REQDPLTPAARDEWRRLVRRAAEATAGPRFVARRN 617


>gi|90420586|ref|ZP_01228493.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans
            SI85-9A1]
 gi|90335314|gb|EAS49067.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans
            SI85-9A1]
          Length = 1209

 Score =  125 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 93/920 (10%), Positives = 203/920 (22%), Gaps = 74/920 (8%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            D         L  + +    V    RL  L                 L  +     P S 
Sbjct: 255  DAAFCDSAMSLAAASSKPTDVKFRDRLQALRDAGTPDARLAALKALCLTAKGTPYKPSSV 314

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTERLVE 201
            A    +A  L D  + ++      + +   L + +       A        + +      
Sbjct: 315  A-TKAVADALPDFPERLQQLADHVQAIDERLASLRLFRASAAALVIADAFERDYAILKRR 373

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIAGSTGSIPATARLMSTVAN-- 251
                      +                         ++I  +  + P   ++M  +    
Sbjct: 374  RGRLDFEDLIVRTAELLTRSAASAWVHYKLDQGIDHVLIDEAQDTSPRQWQVMRQLVEEF 433

Query: 252  ------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN---TTYSTHPQYSLAKLLDF 302
                        V    D       +   + +              +   ++   +L   
Sbjct: 434  FAGAGAREVTRTVFAVGDEKQSIYSFQGASPRMFADEQRAMRKRAEAAEARFEEVRLTQS 493

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM--------RNTDILENKIPNIQK 354
                 + ++ +  V  +   R  + S    P   +                  + P  + 
Sbjct: 494  FRTAADVLRAVDTVFADAENRKGLSSGDEPPAHQTARGEAPGLVEIWPVYQAEEQPQSRD 553

Query: 355  CFSDVALIEADNER-EEAISIAIALRMSLDEN------------KKKSALITADRNLARR 401
                +    A++     A  IA  +   + +                  L+         
Sbjct: 554  WLQAIDYEPANSPANRLARRIAAQIGDWIGDPIAHKGAVRPLAAGDVIVLVRKRSGFVAA 613

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            +   L   GI +  +  + ++  +    L +L   +    D ++ A ++K P   F   +
Sbjct: 614  MAKALRDAGIPVAGADRLVITDHIAVKDLMALGRTVANFEDDLSFAAVLKSPFFDFTDDD 673

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                            G +       L  +           T     + R +    +   
Sbjct: 674  LMGLALSRERHEPLSLGLRRICGPEGLARVPEFVPDET---TEAFLAKCRYALTRLDELR 730

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                                        +   +   +    ++ L +             
Sbjct: 731  ARSGFETIFAFYARILGPEGGRARLTRRLGSDSGEVIDAFLDLALADEDAGEPGLDAFLA 790

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            +  ++  S   E         I        L            +          SRL+ +
Sbjct: 791  RLAAAPPSIKREMEQGRGEVRIMTTHASKGLEAPVVFLVDPGSAP---FSHAHGSRLMEW 847

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
              +              A     +  + +    + A          +         +   
Sbjct: 848  PDMPGLVPGMSPGFLWRAAKDLENDAIAALKEAEKARAEEEYRRLLYVGMTRAADRLVVC 907

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL----------DWTRKLDYTTKQ 751
             +     P   S WLQR  +    +    +   G                   +      
Sbjct: 908  GVSGVRGPNENS-WLQRAQLALSAECEPVIDADGATIAWRFGAAGTGDKLAAAIPSQPDA 966

Query: 752  PHYKRPKPFPPLEAQPRTYSFSEI----KQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
            P      P PP    PR  S S      +   +D     A +      +           
Sbjct: 967  PAPLDLSPLPPEILPPRPLSPSSAGEGTEIAEDDAIPPEAAQAFVSPVLSQTGDPSFAIR 1026

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
            RG   H ++  L +   +         +          ++       +        +  F
Sbjct: 1027 RGLAVHKLLQVLPEMAADAREAAARRYLATAAPEMRAGDHDALVASALAVMDDPGFAAIF 1086

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--K 925
                        +  V +  ++ +      + G  DR+ +  +  V I DYKT   P   
Sbjct: 1087 AA--------GSRAEVPVAGEITLAGRSYRVNGTIDRLAVTTT-RVLIVDYKTNRPPPAS 1137

Query: 926  KETAQKLIDPQLSLEAAALK 945
                      QL+L    LK
Sbjct: 1138 LAEVSPAYIMQLALYREMLK 1157


>gi|284052478|ref|ZP_06382688.1| ATP-dependent nuclease subunit A [Arthrospira platensis str. Paraca]
 gi|291571372|dbj|BAI93644.1| putative helicase [Arthrospira platensis NIES-39]
          Length = 1070

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 103/905 (11%), Positives = 219/905 (24%), Gaps = 132/905 (14%)

Query: 154  DIIDIIETEEKKW---EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            D +  +  E  K    E+L   +  +           LK A +   + L +L        
Sbjct: 261  DALKALREELVKPCIKENLINAEVGEADHKLAEMLAALKEAYREVKDYLQQLKWQ---AR 317

Query: 211  QIALMRAEAEHLMKGTKGPII------------IAGSTGSIPATARLMSTVANHPNGAIV 258
             +     E   L      P I            +     + P    ++  +    +  IV
Sbjct: 318  VLTFADLEIGALTALQNNPTIQLYYQQRWRTFLVDEFQDTNPIQGEILELLTQTADLTIV 377

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
                D       +     +  N        +   Q     L       ++ + ++  V +
Sbjct: 378  ---GDKKQSIYGFRRADIQVFNKFRKRIIDN---QGDEIILNQSFRTHQQLINQINQVFS 431

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
             + G      ++      S      I                         E   IA  L
Sbjct: 432  PLLGDLRQDLEAVRIDSPSPRETLQIFVIPKTAETDVTQ--------RRIAEGKLIAKTL 483

Query: 379  RMSLDEN---------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
            +  LD                     A++T            L    I +  S G  L  
Sbjct: 484  KEMLDNQTPVFDKETQQLRPIQPGDIAILTRTWGPLDSYGEALAAAQIPLAPSGGGNLLE 543

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
            T  +    SLL  +    D +A+  L++ P         +   +   L   +   N + +
Sbjct: 544  TQEAKDAWSLLKFLADPGDDIALVALLRSPFFTISDRLLFKVSSNLKLSHQSTSENMSWW 603

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
              ++        +   K    +     +   E     + + D +      +     +   
Sbjct: 604  KFLN----SGSPVEFTKAIDPLKRLLKKRHIEPPSRLLQIADRLTGYTATIANLPASNRR 659

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                    +  ++      ++     R            T+           S +   A 
Sbjct: 660  LADFNGFRELVQILEQGTDDLFGVVRRLKRLKDKAV---TVERPPINTSNAVSLMTIFAA 716

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
            + ++    ++   +                       FD      +      ++      
Sbjct: 717  KGLEWPMVVVADLSRPTPNSSVPV------------YFDPEYGVAIACKDEDQDRKDPVI 764

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
             + +       + AE         +     +R  I   + +E             L +  
Sbjct: 765  YNWLKYRHQQREEAEALRIL----YVALTRSRDYILLTASQEKGNYLNK----LYLGLQA 816

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                   L+      +                 P     + +       + + +    P 
Sbjct: 817  ANIPITTLEINSDDIIPPVPPSPLPPAINP---PLLTEAMTSGLFELPVTSLSEYKRCPT 873

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
                  IL        ++       G L H  +   I+              +Q++    
Sbjct: 874  RFKFIYILGHPGFS--EEANQGMRIGQLVHKALEYDIRDIDKLQKFAEYGTDEQLLSEAI 931

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
                   + +             F +HE                ++ ++ +G+   G AD
Sbjct: 932  CLAIDFDNTEEF---------KIFRDHEINR-----------EIELKLDILGVSFNGIAD 971

Query: 904  RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
             I     G   + DYK+          +  + QL   A AL             A++ Y+
Sbjct: 972  LI-----GDNWVLDYKSDRV----MRPEHHNLQLWAYAKALNYSE---------AHIAYL 1013

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
            R KQ + +     +K  + A+            IV  +  G  P     + S ++     
Sbjct: 1014 RHKQLYTLPPKLLEKTAHEAE-----------SIVRDIVEGHYP----PKPSLENCQTCR 1058

Query: 1024 YDHLA 1028
            Y  + 
Sbjct: 1059 YREIC 1063


>gi|308389838|gb|ADO32158.1| exodeoxyribonuclease V [Neisseria meningitidis alpha710]
          Length = 1069

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 107/885 (12%), Positives = 231/885 (26%), Gaps = 69/885 (7%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191
           L    +    LA  LADI D       +W D      + +L +++    W          
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              W  R ++    S         +               + G +   P   +L+  ++ 
Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           H +  +             W  + E +  +        T   + L   L        D  
Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
               +  E          + L    +D++N D+   K  NI      + ++ A +   E 
Sbjct: 283 NEMEIEGETPVFEEGSRDTLLHALQTDIQNLDMPSEKAGNINTDDGSIRIVSAHSPLREL 342

Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421
             +   L   L E+        A++T +          +          +   +S     
Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477
                   L  L + +    +   +  L++             +  L     A   V   
Sbjct: 403 RRQPFFYTLECLSDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLV 535
            +       D        +        +P   + + ++       +       +    L 
Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLE 522

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           T            ++ +W       L+ +   E      +   E         +++ +  
Sbjct: 523 TLSDIVRIWQQPATVGEWVARCRDLLETLFQTEADDQKAVQNLENEWVKWQAETELAQFS 582

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
             +       I  I R +D E+          +     +  R L F  + L GLN+G +P
Sbjct: 583 GQLP--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712
           +NT    F           +             E     R  L  +   R+   +     
Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696

Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
           S  L  L+           ++  Q +++             Y +           RT   
Sbjct: 697 SSLLGELIDTVAAMAGIGSRQLAQNWIEQHPLQ---AFSRRYFQEGGRSDGIFGTRTDYA 753

Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
           + + Q    P   + + +   + +    +D    +    + N +   +++++  + P   
Sbjct: 754 TALGQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP--- 806

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
             + +  +     E               +    F +   +I++ 
Sbjct: 807 -HIGEAWEPAEPFEPQHADQIAEIYIEARREGQDFSQTAARIRAE 850


>gi|240017063|ref|ZP_04723603.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae FA6140]
 gi|240118423|ref|ZP_04732485.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae PID1]
 gi|268604138|ref|ZP_06138305.1| exodeoxyribonuclease V [Neisseria gonorrhoeae PID1]
 gi|268588269|gb|EEZ52945.1| exodeoxyribonuclease V [Neisseria gonorrhoeae PID1]
          Length = 1069

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 105/875 (12%), Positives = 212/875 (24%), Gaps = 80/875 (9%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W             W  R ++    S         +  A
Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N  +    + ++      + ++ A +   E   +   L   L E+        A++T +
Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L+ L + +    +   +  L
Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D        +        +
Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQAVDRMVLGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +       +    L T            ++ +W       L+ 
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +          +   E          +    G   +      I  I R +D E+      
Sbjct: 551 LFQAGPDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-- 738
                E     R  L  +   R+   +     S  L  L+         N ++  Q +  
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMTGTNSRQLAQNWIE 724

Query: 739 -------------------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
                                     D+   L  T + P     +P              
Sbjct: 725 QHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPV-ENAEPVAEIGQD 783

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIKKRINKNTPEIN 832
           E  +   +P  V+ ++ L        +               I    I+ R      +  
Sbjct: 784 EFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFDPQHADQIAETYIEARREG--QDFA 841

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
               +I             +  +W+  F   +   
Sbjct: 842 QTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873


>gi|300783060|ref|YP_003763351.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
 gi|299792574|gb|ADJ42949.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
          Length = 1080

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 110/1049 (10%), Positives = 272/1049 (25%), Gaps = 142/1049 (13%)

Query: 46   SVTIYVPTKRAIQELRSE------------FIEITGKKSTILPIIKS--LGDVVEEKFTA 91
             V     T++A ++L                ++       +   + +     +    +  
Sbjct: 70   RVLGLTFTRKAARQLGERVRARLRRLAGSGLLDRLDPTGGLRSTVVAGEPTVLTYHAYAG 129

Query: 92   DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
             LL  + L  PV    RLL       I    +     +L  ++    P   A+ + LA  
Sbjct: 130  RLLSEHGLRLPVQPGVRLLSETSSWQIAHRVVSTWDNEL--DTDRVPPTVTADLLALAGE 187

Query: 152  LADII---DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI------------ASKYWT 196
            L + +   + +         +        G    L     +I                + 
Sbjct: 188  LGEHLVSTEQLAEYTTWLCRVIENAPRAKGQRAALPQKLTEIMAAQHFRLALLPLVDDYH 247

Query: 197  ERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             R     A           +    +       +   G +++     +  A   L+  +  
Sbjct: 248  RRKRNEGALDFADQMSLAAQLAGGYPSVVRGERERYGAVLLDEYQDTGHAQRVLLRALFG 307

Query: 252  --HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                    V    D       W   +  +    +++       +   A     L   R  
Sbjct: 308  GVENPPMPVTAVGDPAQAIYGWRGASAANLPRFTTDFPRFDGERLVPAHEFGLLTSFRNP 367

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
             + L   +                         DI    +P+I+   + V          
Sbjct: 368  PEILDLANAIAEPLRARGLGVERLRAREGAGPADIACALLPDIRAERAWV---------- 417

Query: 370  EAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
             A ++A       ++  K   +A++   R     +  EL   G+ +++     L      
Sbjct: 418  -ADALARRWYAHQEQTGKPPTAAVLVRRRADMAPIAAELRARGLPVEVVGLGGLLDEPEV 476

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            + L S L  +       A A L+     +    +      +        + +     +  
Sbjct: 477  ADLVSTLKVLADPLSGSAAARLLTGARWRLSAADVAALWRRAGELSSPEKPDTPELVVER 536

Query: 488  LKSL-VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            ++   ++D I    +         +           L   + Q +  L            
Sbjct: 537  VEQAGLIDAIDEPGDPARYSDEGYKRIRRIGWELAALRRRLDQSLPEL------------ 584

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
               ++D  +  +  ++++         +L   +    + + +++   T + +  + ++++
Sbjct: 585  ---VADVERTMLLDVESLARPGSAGRAHL---DAFAEVVTDYAETAPTATLL--SFVDYL 636

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS- 665
            +      DG T          + +L    ++ L ++ + +  L   V+P     + +L  
Sbjct: 637  NTAAHAEDGLTPGEVEVVPDRVQVLTVHSAKGLEWEVVAVPHLVHDVFPGRRRSSSWLRT 696

Query: 666  ------------------------RVMQSDLNLKTAE------KYIGQAAHDFEMANGTR 695
                                       +    L+  E      +   +    +     + 
Sbjct: 697  ATSLPAKLRGDAEDLPELRIAEGYDRKEVQEGLELHEAGFVEREQAEERRLCYVALTRSE 756

Query: 696  HLIYTRSLRENNIPTI---ASRWLQRLLVL--------GGTDFFDNLKKRGQCYLDWTRK 744
            H +       N   +     S +L  +  +              +  +      +  +R 
Sbjct: 757  HALIVSGHWWNESSSRVKGPSEFLTEIADVVRETGAGQLAEWAPEPTEDDENPLVSDSRA 816

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSE---------------------IKQLINDPY 783
              +       +R      +E      + S                      +++      
Sbjct: 817  ARWPVDPLSDRRTGVQTGVELVSEALASSPDEEASEEDDDPDGWLTDTDVLLEEWARKDD 876

Query: 784  AVYARRIL-KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
             V    +  +L          D           +         + T     L ++     
Sbjct: 877  HVKLVPLPSRLSVSQLVALADDAARLAADLRRPLPVEPNSFARRGTEFHGWLERRFAGDQ 936

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
              + +  P                  E E+   +S   + V +     +E  G+ L G  
Sbjct: 937  LIEIDDLPGAADFGEAPDADFEELQTEFEKSEWASRVPVAVEVTFSADVE--GLTLRGRM 994

Query: 903  DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF- 961
            D +     G   + D+KTG  P +      +  QL+    A    +   +   +V   F 
Sbjct: 995  DAVFADPEGGWTVVDWKTGAVPPESRIPA-LSVQLAAYRMAWA--ALKNVPVEQVRAAFH 1051

Query: 962  YIRLKQKFKIDCITNDKKKYSADELSEKS 990
            Y+R  +  +   + + +   S      ++
Sbjct: 1052 YVRANRTIRPADLLDPEALRSLLRDIPEA 1080


>gi|194335096|ref|YP_002016956.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
 gi|194312914|gb|ACF47309.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
          Length = 984

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 123/1031 (11%), Positives = 273/1031 (26%), Gaps = 163/1031 (15%)

Query: 31   VENFRYDPLNPLLLASVTIYVPTKRAI----QELRSEFIEITGKKSTILPI-IKSLGDVV 85
            +    ++   P    ++  +  T++A     + + S   +     + +  + I ++    
Sbjct: 48   IARLIHEGAKPE---NIIAFTFTEKAAESIKRRVASALEKAGLPVALVGAMYIGTIHAFC 104

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
            +    +             N  RL  L+R    +     + ++              +NA
Sbjct: 105  QNLLGSMNAKYRQYEVLNENRLRLFLLSR----YYELELNALQANRNARMFQTIAEVSNA 160

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
              +A +    +D IE E+                        L    K    RL      
Sbjct: 161  WKMANDEMLSLDEIEEEDAP----------------------LGSCLKNINNRLNSDQYI 198

Query: 206  SPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                    ++ A        +    +   +++        +  RL+  + +  N   V+ 
Sbjct: 199  DFSLMIRLVVEALEANNTEIYAALESANHLMVDEYQDVNISQERLIRGLYSRLNSLFVV- 257

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTT-YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       W     ++           STH   +  +  + +    +   +    +  
Sbjct: 258  -GDDDQSIYGWRGADVRNIIEFDQRYPNCSTHTLSTNFRSTNTIVSTSDRFIQHQLSTAR 316

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKI-PNIQKCFSDVALIEAD-NEREEAISIAIA 377
            +    +  S   +    +    T   E +   N          IE D +ER    S    
Sbjct: 317  IDKAPISNSDGNIQHFGNLWFRTKQDEAEWIANRINQLLGTKYIETDGSERGLTKSDFAI 376

Query: 378  LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
            L  S+    +            R     L++  IN  I A   +   LH+  L   ++ +
Sbjct: 377  LMRSVQGGTRN-----GGAPYHRDYTNALSKADINYIIEAEGSIFERLHARTLRDAMSLL 431

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                                          +              +   DL   +   +A
Sbjct: 432  RSPGYP------------------------RREAINFFNSNILPVFPNADLNKFLEI-LA 466

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
               N  H P   +R     + L   L++      T    ++                   
Sbjct: 467  DWNNQIHRPIGGARRKVYPQLLVHELLEAFRISTTEFQNHEQVMRDL------------- 513

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                  + LD  +   ++   +  +++ +    + E+G                     T
Sbjct: 514  -GVFSGIILDVEKVFVSIDTGQRYQSMLNFLENVAESGY------------------DTT 554

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL--- 674
                + +   + I    + + L F  + +  + +  +P   +       +      L   
Sbjct: 555  QVELMSRPDAVTISTVHKMKGLEFPVVFIVDVVQQRFPGKRSSYNGWLPLNLIQNPLSRG 614

Query: 675  KTAEKYIGQAAHDFEMANGTRH-LIYTRS--LRENNIPTIASRWLQRLLVLGGTDFFDNL 731
                   G+A   +         L  T S        P   S +   +  L   +     
Sbjct: 615  LYQSNIFGEARLFYTALTRAERFLYVTGSSIQPGLQRPKNPSPFKLIIQGLNDPEVIT-- 672

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                          D T    + +R +  P ++ +    SF+EIK  +  P     R+I 
Sbjct: 673  --------------DTTHLPDNIERIEQRPRIDEESMPTSFTEIKDYLECPMKYKFRKIY 718

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
                             G   H  I    +   N           +I +  F  +++ P 
Sbjct: 719  GYSPAVPELFG-----YGLTTHTAINRAHQLFANAAP--TREEAGEITEDVFHLKHVFPS 771

Query: 852  I---DIIWRHLFHKISHSFLEHEEKIQS--SIEKIFVNIPAKMAIESIGIHLTGFADRID 906
                           S   + +  +      ++   +    ++   +    +TG  D + 
Sbjct: 772  RDPEREGPYERAKNASKRLVGNYAEGYPEDFVQSRSLEQRFEIKANNA--LITGSIDLLL 829

Query: 907  LLKSG----FVDITDYKT-----GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
               +        + D+K+     G           +  QL   AA +  G  ++      
Sbjct: 830  REDNNGNILEARVIDFKSMDFPEGQLNPFFWINLSLQVQLYAYAADIVLGENAKTGS--- 886

Query: 958  ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEK 1017
                 + L +    + + N       DE  E +++N+   V  +  GE P    +R S  
Sbjct: 887  -----VHLLKALSTEEVPNRVNVPITDEAIESAIQNIEWAVNRILEGEFP----MRPSVG 937

Query: 1018 SNIQSEYDHLA 1028
               + ++  + 
Sbjct: 938  KCEECDFRKIC 948


>gi|302542687|ref|ZP_07295029.1| putative ATP-dependent DNA helicase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460305|gb|EFL23398.1| putative ATP-dependent DNA helicase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 499

 Score =  124 bits (311), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 56/450 (12%), Positives = 120/450 (26%), Gaps = 53/450 (11%)

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                +   E  +  +       ++  + I  +T+  +I +   + ++    S+ L +  
Sbjct: 3   ALFETAARAEERTGGRGALNFLDELDAQDIAADTLSRRIARPDAVRLMTAHRSKGLEWRL 62

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNL---KTAEKYIGQAAHDFEMA--NGTRHLI 698
           +++ G+ EG+WP    +   L         L    T    + +    F +A       L+
Sbjct: 63  VVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEERRLFYVAATRARDRLV 122

Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
            T      +     SR+L  L V           +R         +L  TT  P      
Sbjct: 123 VTAVKAAADDGDQPSRFLTELGV--PPVDVTQRPRRPLSVAALVAELRATTVDPDASDAL 180

Query: 759 -----------------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL-- 793
                                  P          Y  +  +  + D     A     L  
Sbjct: 181 REAAAQRLARLAALRDEDGRPLVPAAHPSGWWGLYEPTHSEVPLRDRDRPVALSGSALDQ 240

Query: 794 ------------DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
                         +            G + H ++ + +          +       +  
Sbjct: 241 LVNTCSLQWFLGREVKADAPSTAAQGFGNVVH-VLADEVASGRTPADLAVLMERLDSVWD 299

Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLT 899
               +                    FL      +     +       + +++    + + 
Sbjct: 300 ALAFDAPWKSRQEKEHAR--AALERFLRWHVMERGGRTAVASEHGFDVTLDAETYQVRIR 357

Query: 900 GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI---DCRK 956
           G  DR++    G   + D+KTG        +    PQL++   A++ G+   +   D  +
Sbjct: 358 GSMDRVEADAEGRAYVVDFKTGK-QSVTRGEVAHHPQLAVYQLAVREGAVDGLFGDDRPE 416

Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADEL 986
                 ++L+Q            K  A E 
Sbjct: 417 PGGAELVQLRQGAPKKEGGETVPKVQAQEP 446


>gi|223983368|ref|ZP_03633554.1| hypothetical protein HOLDEFILI_00834 [Holdemania filiformis DSM
           12042]
 gi|223964540|gb|EEF68866.1| hypothetical protein HOLDEFILI_00834 [Holdemania filiformis DSM
           12042]
          Length = 897

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 92/662 (13%), Positives = 191/662 (28%), Gaps = 68/662 (10%)

Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
           P            +A N R+EA   A  +     + ++   ++   +     V+  L R+
Sbjct: 180 PLPSAQPRTTRFYKALNSRQEAEGAAQLILHEEWKPEEVMIILCDSQRDGSLVRSVLARY 239

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            +         +S    S IL    +A   L    +I  ++K                  
Sbjct: 240 QLPAAQ-----VSYQKPSKILR-CFDAFVALTRAPSIEAVLKT----------------- 276

Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIAT-QKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
            L+L A     +   +  L   V D+    +   THV       +  +      L+    
Sbjct: 277 -LQLKAYPVLISEAYVQYLTQFVFDQNDLCEPVFTHVQRALETNTLLNTIEKENLLRLEA 335

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
           Q  +              ++ +S+        L+                E  +      
Sbjct: 336 QAQSVHEQLLPWLLPLLEDVPLSEKLNRCYELLRQHSCLSD---------ELERRALLNL 386

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
              +E    +     E +D++  L+  + ++   E    + I   L+  L      IL G
Sbjct: 387 KTTLEDCWDL-LEQPEALDMLMALLAQKKLEISEEVDGRIAITD-LKHPLPARPLTILFG 444

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKT-AEKYIGQAAHDFEMANGTRH-LIYTRSLREN 706
            ++  +P N A             ++ + A++Y         +     H LIY+ +    
Sbjct: 445 ADQNSFPGNIAYAGIFDEDYLKTTSMPSQADRYDHYTKQLEWIYTSASHCLIYSYAAGNY 504

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
              +    +          +       R   +     ++    +                
Sbjct: 505 EGKSWDVAF----------EIEQRAASRAVLWPLIQNEVYSDQRHQLTPETARRLFTPDH 554

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
               S S  +     PYA + +  L+L          +    GT+ H ++ + I+     
Sbjct: 555 VLRGSISSFETYFQCPYAYFLKSGLRLS--KGSLTTVNAAIVGTIQHALLEQSIQTWGKD 612

Query: 827 NTPEINHLMKQIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-----SIEK 880
                   M  I+  +F++  +L P        +  ++  +  +  E + +     S   
Sbjct: 613 YAKLNETEMTAILSPYFQQLHDLFPDQQAEIDQIQRRMQLNLTQLLEALAAMEENTSFAP 672

Query: 881 IFVNIPAK---MAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQ 936
            +     +   +    I + L G  DRID    G + I DYK+      +   +  +  Q
Sbjct: 673 AYQEYRFEEDLLETGGITVRLKGIIDRID-TCLGDLRILDYKSSAKTLSESKVKAGLQLQ 731

Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQK--FKIDCITNDKKKYSADELSEKSLKNL 994
           L                    A  +Y  LK +     +   N ++    D   +  +  L
Sbjct: 732 LLTYLIIAVRKL-----RLNPAGAYYCSLKNETISVSEASLNGRRMEIEDVERDAWMSEL 786

Query: 995 IE 996
             
Sbjct: 787 QS 788


>gi|325136636|gb|EGC59236.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           M0579]
 gi|325201628|gb|ADY97082.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           M01-240149]
 gi|325208637|gb|ADZ04089.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 1069

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 107/885 (12%), Positives = 231/885 (26%), Gaps = 69/885 (7%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191
           L    +    LA  LADI D       +W D      + +L +++    W          
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              W  R ++    S         +               + G +   P   +L+  ++ 
Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           H +  +             W  + E +  +        T   + L   L        D  
Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
               +  E          + L    +D++N D+   K  NI      + ++ A +   E 
Sbjct: 283 NEMEIEGETPVFEEGSRDTLLHALQTDIQNLDMPSEKAGNINTDDGSIRIVSAHSPLREL 342

Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421
             +   L   L E+        A++T +          +          +   +S     
Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477
                   L  L + +    +   +  L++             +  L     A   V   
Sbjct: 403 RRQPFFYTLECLSDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLV 535
            +       D        +        +P   + + ++       +       +    L 
Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLE 522

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           T            ++ +W       L+ +   E      +   E         +++ +  
Sbjct: 523 TLSDIVRIWQQPATVGEWVARCRDLLETLFQTEADDQKAVQNLENEWVKWQAETELAQFS 582

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
             +       I  I R +D E+          +     +  R L F  + L GLN+G +P
Sbjct: 583 GQLP--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712
           +NT    F           +             E     R  L  +   R+   +     
Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696

Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
           S  L  L+           ++  Q +++             Y +           RT   
Sbjct: 697 SSLLGELIDTVAAMAGIGSRQLAQNWIEQHPLQ---AFSRRYFQEGGRSDGIFGTRTDYA 753

Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
           + + Q    P   + + +   + +    +D    +    + N +   +++++  + P   
Sbjct: 754 TALGQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP--- 806

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
             + +  +     E               +    F +   +I++ 
Sbjct: 807 -HIGEAWEPAEPFEPQHADQIAEIYIEARREGQDFSQTAARIRAE 850


>gi|119357211|ref|YP_911855.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354560|gb|ABL65431.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Chlorobium
           phaeobacteroides DSM 266]
          Length = 1077

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 109/954 (11%), Positives = 242/954 (25%), Gaps = 111/954 (11%)

Query: 19  REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78
             ++ AL               P +     I V ++   + +  E     G  +      
Sbjct: 12  ETLVDALAE-------VLGRNPPSVFEYEKIVVQSRGMQRWISMELARRFGVWAGAE--- 61

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
               + + ++   ++ L+   +   S       + RL+    ++           S L  
Sbjct: 62  YPFPNRLLQQLFEEMELTQPDSSTFSKEVMCWSMMRLLPEMLDRELFSPL----RSYLRN 117

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                    L+  +AD  D                 +     W           + W   
Sbjct: 118 DRDGLKLFQLSGRIADTFDQYTLFRTDLLAAWEEGRDDGARDWQP---------ELWRAL 168

Query: 199 LVELNASSPVGYQIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
           + E +       +    ++     L  G    I + G +   P    ++  +A      I
Sbjct: 169 VAESSGKHRGRLKTEFCLKVRHASLPAGFPKRISLFGISYMPPYHIGMIEALATRIPVNI 228

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
            L        + I +       +      +   +P   LA L        + +   G + 
Sbjct: 229 FLLSPTQEYWSDIVSRRKLFRMSEGERELSTEGNPL--LASLGRSGREFADLLLEAGGIE 286

Query: 318 NEMYGRSMVISKSFLPPDTSD---MRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
           NE          + L    SD   +  T     + P  ++    V +    N   E   +
Sbjct: 287 NEHDLYIEPADDTLLHALQSDMLNLSGTGEEGERRPAPERADRSVQVHSCHNPLREVEVL 346

Query: 375 AIALRMSLDE----NKKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424
              L   L+       ++  ++T +          +          +   I+    L   
Sbjct: 347 HDNLLDLLERLPGLEPREIVVMTPEIETYAPYIATVFGSSGDGVSRLPHSIADRRMLDEG 406

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNS 482
             +  L  LL           I  L+  P    +F   E+ L   +  +    +R   + 
Sbjct: 407 GIAPALLKLLELYGSRLPSPDIFDLLSSPPVSRRFRLDEEELDTIRVWVADTRIRWGMDE 466

Query: 483 YDIMDL------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                L       +     +        +P                  + + +    +  
Sbjct: 467 RSRSGLGLPPFRDNSWRAGLERLLLGYAMPDEGVLFDGVLPFDVEGDAETLGKFADFIDA 526

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
            +          ++  W    +  L      +      L        +++   K+ E   
Sbjct: 527 LEALSARFDRPRTLDGWRDHFIWMLDIFIDADEEVEREL------SHIAAEIDKLTELAG 580

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKS---STLFILGTLESRLLNFDTLILGGLNEGV 653
                      ++   + G   K ++        +     L  R + F  + + G+N+G 
Sbjct: 581 EASFGGETAAPVMIAWLRGRLEKFEMGLGFMTGGITFCAMLPMRSIPFRVVAMIGMNDGA 640

Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRE--NNIPT 710
           +P+      F     +     ++            E     R +   +   +   +N   
Sbjct: 641 FPRQQRLPGFDMMSREPRKGDRSVRGDDRY--LFLESILSARDVLYLSYVGQSIRDNSEQ 698

Query: 711 IASRWLQRLLVLG--------GTDFFDNLKKR---------------------GQCYLDW 741
             S  +  LL           G D    +  R                        +   
Sbjct: 699 PPSVLVSELLDAIERGFAFSEGEDAISRMVVRHKLQGFNPAYFTERSPLFSYSDDNFRAL 758

Query: 742 TRKLDYTT------KQPHYKRP---KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
             + +         + P   RP   +P P  +   R  +  ++ +   +P A +  R L 
Sbjct: 759 ACRDERNAGNGSRGRNPVEARPFMDEPLPEADDGDRRVTIDDLVKFFANPSAFFLDRQLG 818

Query: 793 LDF---IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
           L     +   ++       G   + +  EL+   +     E    +  +  S       P
Sbjct: 819 LKPSAALRPLEEREPFGAEGLDAYMMRQELLAAVLEGGKEEA---LLPLFRS--RGLLPP 873

Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
                +           F +   +++ S     +       ++  G  LTG  D
Sbjct: 874 ARHGELLFGELLAEVREFADRLPELKGSAAPAVLEAD----LDIGGFRLTGRLD 923


>gi|161507625|ref|YP_001577579.1| ATP-dependent exonuclease subunit B [Lactobacillus helveticus DPC
           4571]
 gi|251764593|sp|A8YVK1|ADDB_LACH4 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|160348614|gb|ABX27288.1| ATP-dependent exonuclease subunit B [Lactobacillus helveticus DPC
           4571]
          Length = 1160

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 109/902 (12%), Positives = 244/902 (27%), Gaps = 154/902 (17%)

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
           DL  +               L+I    + E +     S+    Q+ L    A++      
Sbjct: 138 DLDNIDETNLDQETKSKIHDLRIIYDAFIEEIAGK-FSTKNEVQVQLNDILAKNSE-LKN 195

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
                   +         +  +        +                 +      +    
Sbjct: 196 ASFYFCDFSHFSLQEMLTIQILMRKAKNVTL---------------AFKTRLGNINPKAE 240

Query: 288 YSTH---PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
              +    Q ++ +L+ FL  +  D                V S+  +P + +     + 
Sbjct: 241 AGDYDYVIQQTIRRLVSFLQERDMDY---------------VASEFPIPSEPTPREILNS 285

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARR 401
           L  +  +       V L++AD+   EA  +A  +   +   +   +   ++  D      
Sbjct: 286 LWTETVSKVDELKQVQLVKADSRYAEAYFVARTIYQQVALNNYRYRDFLILAPDLKEYET 345

Query: 402 VKL-ELTRFGINIDISAGIPLSTTLHSSI---LTSLLNAIFKLNDFMAIATLVKHPLA-- 455
                L +  I         +       +   L +L +         ++  ++K  L   
Sbjct: 346 YLTPILRQNNIPFFNDLQQEMKYHPLVVLIENLFNLRDLKENPFQTQSMLAILKTHLLIP 405

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
            +   E       + LE   L    N       K       A       +    +++   
Sbjct: 406 SWYKEEAEYIHDVDELENFVLAHGINHNLWK--KHFADFVSAEVIRLDKIDEEVAKID-- 461

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI------SDWTKLTVTCLQNVCLDEH 569
              L   LVD +    T L   K ++ +             ++  +       N    + 
Sbjct: 462 --RLRGYLVDKVTNLFTKLEQEKDSQKALTIFFDFLTKNGIAERLEQWRDAANNAGDLQQ 519

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
            + P   ++   + L    +   E     K +  E+ +++       T          + 
Sbjct: 520 AQQPEQLWDLLIQLLKDYLAINPE-----KFDLDEFFNMLISAFKEATFSQIPSTLDAVN 574

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYI 681
           +      +   +  + + G   G  P    K  FL+    + L         L+  ++  
Sbjct: 575 LSEMGMVQTSGYKQVFIIGATSGNLPSIEKKPGFLTTENLNQLQSSFESDAYLEDNQRLN 634

Query: 682 GQAAHD---FEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTD-FFDNLKKRGQ 736
               +      +A     +  +  +   +N     S + QRL   G  +    +L ++ Q
Sbjct: 635 NLDQNYQFGLSLALAQDRVYISYPVLNASNEKLDPSIYYQRLQDYGAPEFSQHDLPEKMQ 694

Query: 737 CYL-----------------------DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--- 770
             L                            L  T K    K        +   +     
Sbjct: 695 ELLSFITNPDASLGYLAYINSNTSDEAIDELLKITQKYLPQKVKAVLDASDFDNQPEDIG 754

Query: 771 --------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                         S S+++    + Y  +    LKL      + + D    G  FH   
Sbjct: 755 EDLAAELYGKNLYSSVSQLETFYENSYEYFLTYGLKLRRR--LENEFDVIQAGNYFHETF 812

Query: 817 TELIKKRINK----------NTPEINHLMKQII-DSHFEKENLPPHIDIIWRHLFH---- 861
             L+K+   +             +  + ++ +I D     + +    +    H       
Sbjct: 813 DRLVKRLNEQHIDLADLSSVELEQQLNQVRDVIKDESKYAQLMNDPFNQYLFHCLDHTTS 872

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPA---------KMAIESIG----IHLTGFADRIDLL 908
           K++ ++ +   +  + +   +  +            + I  +     ++L G  DR+DL 
Sbjct: 873 KVAQNWRKSLAE--TPLRAKYSELSFGLDQKIKGISLDIPDLPGNHQVNLRGKIDRVDLA 930

Query: 909 ----KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS--FSQIDCRKVANL 960
               K   +  + DYK+             I  Q+      L   +  F++ D   +   
Sbjct: 931 NFAEKDQVLAQVIDYKSSAKKFDLGMFYNGIALQMISYLDVLTNNNRFFAEEDKLSLLGA 990

Query: 961 FY 962
           FY
Sbjct: 991 FY 992


>gi|302521801|ref|ZP_07274143.1| ATP dependent DNA helicase [Streptomyces sp. SPB78]
 gi|302430696|gb|EFL02512.1| ATP dependent DNA helicase [Streptomyces sp. SPB78]
          Length = 439

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 55/401 (13%), Positives = 108/401 (26%), Gaps = 56/401 (13%)

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL---KTAEKYIGQAAHD 687
           +    ++ L +  +++ G+ EGVWP    +   L         L    T    + +    
Sbjct: 1   MTAHRAKGLQWRLVVVAGVQEGVWPDLRQRGSLLEADRIGSDGLAEPLTPGALLAEERRL 60

Query: 688 FEMA--NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
           F +A       L+ T            SR+L  L V           +R         +L
Sbjct: 61  FYVAATRAADRLVVTAVKAPAEDGDQPSRFLTELGV--EPRHLTVRPRRPLAVPALVAEL 118

Query: 746 DYTTKQPHYKRPK-----------------------PFPPLEAQPRTYSFSEIKQLINDP 782
             TT  PH                            P             +  +  + DP
Sbjct: 119 RATTVDPHASPALREAAARRLARLAALTDGDGRPLVPTAHPGTWWGLADETVNEVPVRDP 178

Query: 783 YAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
               A     L                +            G + H ++ + +    +   
Sbjct: 179 AQPLALSASALGQLVDVCALQWFLGREVRAEAPASTAQGFGNVVH-VLADEVATGRSPAD 237

Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
            ++       +      +                    FL      ++    +    P  
Sbjct: 238 LDVLMERLDTVWDGLAFDAPWKSAQERENAR--AALERFLRWHVLDRTGRTPVASEHPFD 295

Query: 889 MAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALK 945
           + + +    I + G  DR+D   +G   + D+KTG   P  +       PQL++   A+ 
Sbjct: 296 VTLPAGDHEIRIRGTMDRVDADAAGRAYVVDFKTGKNAPTADEVDHH--PQLAVYQRAVA 353

Query: 946 AGSFSQIDCRKVANLFYIRLK-QKFKIDCITNDKKKYSADE 985
            G+   +          + L+ +  K D ++   +     E
Sbjct: 354 EGA---VGPLTPGGAELVHLRLEASKKDPLSPKVQPQEFPE 391


>gi|170782260|ref|YP_001710593.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
            sepedonicus]
 gi|169156829|emb|CAQ01996.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
            sepedonicus]
          Length = 1086

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 88/837 (10%), Positives = 192/837 (22%), Gaps = 124/837 (14%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPAT 242
            L   +  + E                 +             +     +++     +    
Sbjct: 235  LVDLAVRFQEEKTRRGLVEYSDQVAFALAICERVPQVVAEHRKRFRVVLLDEYQDTSVVQ 294

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             RL+ST+     G  V+   D H     W   +  +     ++   +             
Sbjct: 295  TRLLSTLFG---GTPVMAVGDPHQSIYGWRGASAANLARFGADFAPAG------------ 339

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                      +  +S      + V+  +    +     +   +    P        + + 
Sbjct: 340  ---ASAADVPVYALSTSWRNPASVLGAANRIVEPLTAASRIPVARLEPRPDAGDGHLDVA 396

Query: 363  EADNEREEAISIAIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISA 417
              +   +EA S+A      L +       + +A++             L   G+   +  
Sbjct: 397  YEETIADEAASVAAWFADLLRQTGSDGRPRSAAMLCRSLKTIEPFTTALADRGVPFRVLG 456

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
               L        L  +L  +        +  L+    A++    K +         +  R
Sbjct: 457  LGGLLDQPAVVDLVCVLRVLHDPTAGSELVRLLTG--ARWRIGTKDVHALSRVASWLMSR 514

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
             +       +++  +  R +   +               ++    L     + +  L   
Sbjct: 515  DHAQKPLAEEVRDGL--RASVVPDEVGSVVDALDFVVGARDGHTALAGFSDEGLARLRAA 572

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                      + +     +TV   + +   E                 +        G  
Sbjct: 573  GRQLQVLRSRVGLDLVDLVTVVQQELLLDIEVAANETDPLGRASLEAFTEQVAGYLQGDS 632

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSST-LFILGTLESRLLNFDTLILGGLNEGVWPK 656
                      +              E     + IL    S+ L +D + +  + EG  P 
Sbjct: 633  AGTLGPFLAWLAEAERRDNLAPRTEEPEPGTVQILTIHGSKGLEWDVVAVPRMVEGELPG 692

Query: 657  NTAKNPFL------------------------------SRVMQSDLNLKTAEKYIGQAAH 686
               +                                            +  E+   +   
Sbjct: 693  TLREKKGWVAFGALPFEFRGDSAELPSLAWRGVETQKEFAEAMEAFGEELEERNAAEQRR 752

Query: 687  DFEMANGTRHLIYTRS---LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
               +A          S         P     +L+ +  +G        +           
Sbjct: 753  LAYVAITRTRSDLLLSGSFWSTQQKPRGPGAFLREIQQVGLIAPDALPEAPELEENPLEP 812

Query: 744  KLDYTTKQPHYKRP-------------------------------------KPFPPLEAQ 766
                         P                                          L   
Sbjct: 813  GSARVAWPLPPLGPREARVRAAAGAVAGADPDAETVWTRDIDLLLAERDARARDAELVDL 872

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
            P     S  K  ++DP  V AR    +   P+ +        GTLFH  +          
Sbjct: 873  PTRIPASRFKDFVSDPAGVAARLRRPMPERPYRQTRL-----GTLFHGWVEARYGPAGTS 927

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
            +          +ID+   + +  P    + +    ++   F   E   +   +   V + 
Sbjct: 928  D----------VIDASGVELDADPTEPPVEQEDLDRLRAIFEASEWASR---KPEEVEVE 974

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
              M +      +    D + L+  G   + D+KTG  PK     +L   QL+L   A
Sbjct: 975  IHMELAGQ--VVICKIDAVFLI-DGRYRVVDWKTGRTPKDAADLELKQLQLALYRLA 1028


>gi|325972064|ref|YP_004248255.1| hypothetical protein SpiBuddy_2242 [Spirochaeta sp. Buddy]
 gi|324027302|gb|ADY14061.1| hypothetical protein SpiBuddy_2242 [Spirochaeta sp. Buddy]
          Length = 871

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 98/783 (12%), Positives = 199/783 (25%), Gaps = 110/783 (14%)

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              L +    +                    IS +     +    +   L           
Sbjct: 147  RSLFEPRYAQPCLPPDWDASVRYCILFCDTISSAQQLFTSLGCPSWLELRPTPCAKLA-- 204

Query: 357  SDVALIEADNEREEAISIAIALRMSL--DENKKKSALITADRNLARRVKLELTR-FGINI 413
                L    N   E  +    +R  L          +  A  NL   +  E    + I +
Sbjct: 205  ---TLEVFGNHVMEIRTTLRRIRKLLSSKTPAHSIVIGCAASNLLLPILQEEAVLYDIPL 261

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
             I  G           L  +           ++ +L+  P   +   + +    + A++ 
Sbjct: 262  VIREGKLALEYPSGRFLNRIQEVYDDQFSLESLKSLLLDPGIPYKDRDLHHRFLRRAVDK 321

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
              + G+    D                 + +    QS +         +L   +      
Sbjct: 322  SIVHGSLKQKD-----QFTEMLADRDLRSWYRSLKQSIIDIVTASDIEMLRRKLNHF--- 373

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
                           +   W                 +    +  +    +     +   
Sbjct: 374  ----------QDTYFTAEQWV------------GTEDEDVYSFCLDAIDHIKQAMQRC-- 409

Query: 594  TGSCIKANAIEWIDIITRLID--GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                   +   +  + + L+      +    ++   + +    +   L  D L + GL++
Sbjct: 410  -------SIASYPHVFSYLLSYLQTKLYVPQQRKGGIAVYAWPQVAPLIADHLFVLGLDQ 462

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
                       FL   +  +   +         A    ++ G  ++  +   R      +
Sbjct: 463  ESSATIERPLLFLPSQIGEEHRKEIDTTRANLQA----VSLGDGNVTLSCHTRRYEGELL 518

Query: 712  A-SRWLQRLLVL------------------------GGTDFFDNLKKRGQCYLDWTRKLD 746
              S +L+   +L                         G       ++R       T  L+
Sbjct: 519  PPSAFLEEDALLYHGQSPNLCEDPYLEELALYKQGPSGPAISLESQRRFFLTARKTALLE 578

Query: 747  YTTKQPHYKRPKPFPPLEAQPR------TYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                   Y  P        + R        S ++I      PYA  A  +  +    +  
Sbjct: 579  RRDDYTRYPIPLDLVKKLKEERDGKALLVLSPTKIDLFDRCPYAWLAHYLYGVTKETYDV 638

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINH-------LMKQIIDSHFEKENLPPHID 853
            +  D    G L H +      + ++ +   +         L    +   +  E   P I 
Sbjct: 639  ERVDHLMIGNLLHLVYQRFFSQIVDFDPALLEQYRSLLTSLFDSTLTDVYGSEGPTPSIR 698

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI---DLLKS 910
                  + +     LE E K+ S    I        + +   + L G  DRI   D  + 
Sbjct: 699  SWIIAEYRQKVLCILEQEAKLFSHTRSILFEQELSFSYD--SLFLHGRIDRIINLDPPEG 756

Query: 911  GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
                + DYK G+ P K   +KL   QL L  A +K            ++  Y  +K+   
Sbjct: 757  KSYAVIDYKKGEAPMKSIKEKLSSYQLPLYRALVKHAL-----GGAASHAAYYSVKEGRY 811

Query: 971  ID--CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                     ++    DEL       L+  +  L    Q        S++     +Y  L 
Sbjct: 812  RSLWTDDGSEEALLGDEL-------LVNRLDSLGESVQVGAFMATPSKQHCSGCDYRSLC 864

Query: 1029 RVA 1031
            R  
Sbjct: 865  RRR 867


>gi|160914773|ref|ZP_02076987.1| hypothetical protein EUBDOL_00780 [Eubacterium dolichum DSM 3991]
 gi|158433313|gb|EDP11602.1| hypothetical protein EUBDOL_00780 [Eubacterium dolichum DSM 3991]
          Length = 889

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 89/662 (13%), Positives = 194/662 (29%), Gaps = 77/662 (11%)

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
               K+ +  K   ++A   A N+R+E  + A  +      + +   +   D +  + ++
Sbjct: 170 QQGAKLSSFPKEEQEIAFYHAVNKRQEIEACAQHILN-HSLDAQDIHITLCDASYPKLIE 228

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
               R+ I   +      S         +LLN +F       +   +   L        +
Sbjct: 229 QIFQRYHIPYTLFQQETSSQLP--KQFLALLNYVFDPCK-EQLLACLDSELF--TGGNIH 283

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
             R    L  V            DL          + +   +  +  +  +E +  A   
Sbjct: 284 ALREYMQLFEV------------DLFDNFHHLETMEDSGNLMNIYTLKQLQELENKAAEA 331

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
              +L   T L       N                  ++ +  + ++ +         + 
Sbjct: 332 QAELLPFFTQLNQNMQITNK-----------------VELIVNELNKHIHTDEDRSIYRK 374

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
           ++++  +I              +  +    +      K      + I    +  L     
Sbjct: 375 ITTILYEI-----GDVVQTKNDLHFLASFFENIQGSKKQPSYQGVLIHNHKQEVLPRKYH 429

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM----ANGTRHLIY 699
            +LG          T K  F            + E+   + AH  E        +++LI 
Sbjct: 430 YVLGATQTNYPAFQTKKGIFDEAYYALIKGYPSMEE---RYAHYMEQMNQILTHSKYLIL 486

Query: 700 TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
           +  +      ++              +     +   Q Y       +   +         
Sbjct: 487 SYPVGSYEGKSM----------EAALEIEQYAQTPSQPYPLHENYAELRLQDTLSADMAK 536

Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
              L+      S S  ++ +  P++ + R  L L     F+        GTLFH I+  L
Sbjct: 537 QLFLKNGCLHGSISSFERYVKCPFSYFLRYGLSLK--EPFQPGFPDAYAGTLFHYILESL 594

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENL-PPHIDIIWRHLFHKIS---HSFLE--HEEK 873
                 + + + +  +++I+D          P +++   ++  ++       LE   E +
Sbjct: 595 TNAYGKEYSEQSSKQLRKIVDKELAHLTQIFPSMELALMNVKERLLISMTQTLEVLQEFE 654

Query: 874 IQSSIEKIFVNIPAKMAIESIG---IHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETA 929
             S        +     +       I L GF DR+D  +  F  I DYK+      +   
Sbjct: 655 THSQFSPTASELEFHYDLPLQENVTIALHGFIDRLDTYQD-FACILDYKSSIKTLSETDI 713

Query: 930 QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK--FKIDCITNDKKKYSADELS 987
              +  QL   A  +          +++   +YI LK +           KK  + +E  
Sbjct: 714 FAALQLQLLTYAMVVHQQ-----QQKEIMGAYYISLKNETIPCPAGKLTRKKPVTYNEYV 768

Query: 988 EK 989
           ++
Sbjct: 769 KE 770


>gi|325134747|gb|EGC57384.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           M13399]
          Length = 1069

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 105/902 (11%), Positives = 221/902 (24%), Gaps = 90/902 (9%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191
           L    +    LA  LADI D       +W D      + +L +++    W          
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              W  R ++    S         +               + G +   P   +L+  ++ 
Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           H +  +             W  + E +  +        T   + L   L        D  
Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
               +  E          + L    +D++N  +    + ++      + ++ A +   E 
Sbjct: 283 NEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVNTGDGSIRIVSAHSPLREL 342

Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421
             +   L   L E+        A++T +          +          +   +S     
Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477
                   L  L + +    +   +  L++             +  L     A   V   
Sbjct: 403 RRQPFFYTLECLSDLLESRFEVDKVLALLETAPVLRRFGLTEDDLPLLHDMVADLNVHWG 462

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLV 535
            +       D        +        +P   + + ++       +       +    L 
Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAAFLE 522

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           T            ++ +W       L+ +   E      +   E         +++ +  
Sbjct: 523 TLTDIVRIWRQPATVDEWVGRCRGLLKTLFQAEADDQKAVQNLENEWVKWQAETELAQFS 582

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
             +       I  I R +D E+          +     +  R L F  + L GLN+G +P
Sbjct: 583 GQLP--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712
           +NT    F           +             E     R  L  +   R+   +     
Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696

Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------------LDYTTKQPH 753
           S  L  L+           ++  Q +++                                
Sbjct: 697 SSLLGELIDTVAAMAGIGSRQLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAAL 756

Query: 754 YKRPKPFPPL-------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
            + P+P  P                  E  +   +P  V+ ++ L        +      
Sbjct: 757 GQTPEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAE 816

Query: 807 DR-GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
                    I    I+ R      +      +I             +  +W+  F   + 
Sbjct: 817 PFEPQHADQIAEIYIEARREGR--DFAQTAARIGAESL---LPSGELGRLWQQDFQTAAK 871

Query: 866 SF 867
             
Sbjct: 872 QI 873


>gi|260101293|ref|ZP_05751530.1| ATP-dependent exonuclease subunit B [Lactobacillus helveticus DSM
           20075]
 gi|260084878|gb|EEW68998.1| ATP-dependent exonuclease subunit B [Lactobacillus helveticus DSM
           20075]
          Length = 1160

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 110/902 (12%), Positives = 244/902 (27%), Gaps = 154/902 (17%)

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
           DL  +               L+I    + E +     S+    Q+ L    A++      
Sbjct: 138 DLDNIDETNLDQETKSKIHDLRIIYDAFIEEIAGK-FSTKNEVQVQLNDILAKNSE-LKN 195

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
                   +         +  +        +                 +      +    
Sbjct: 196 ASFYFCDFSHFSLQEMLTIQILMRKAKNVTL---------------AFKTRLGNINPKAE 240

Query: 288 YSTH---PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
              +    Q ++ +L+ FL  +  D                V S+  +P + +     + 
Sbjct: 241 AGDYDYVIQQTIRRLVSFLQERDMDY---------------VASEFPIPSEPTPREILNS 285

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARR 401
           L  +  +       V L++AD+   EA  +A  +   +   +   +   ++  D      
Sbjct: 286 LWTETVSKVDELKQVQLVKADSRYAEAYFVARTIYQQVALNNYRYRDFLILAPDLKEYET 345

Query: 402 VKL-ELTRFGINIDISAGIPLSTTLHSSI---LTSLLNAIFKLNDFMAIATLVKHPLA-- 455
                L +  I         +       +   L +L +         ++ T++K  L   
Sbjct: 346 YLTPILRQNNIPFFNDLQQEMKYHPLVVLIENLFNLRDLKENPFQTQSMLTILKTHLLIP 405

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
            +   E       + LE   L    N       K       A       +    +++   
Sbjct: 406 SWYKEEAEYIHDVDELENFVLAHGINHNLWK--KHFADFVSAEVIRLDKIDEEVAKID-- 461

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI------SDWTKLTVTCLQNVCLDEH 569
              L   LVD +    T L   K ++ +             ++  +       N    + 
Sbjct: 462 --RLRGYLVDKVTNLFTKLEQEKDSQKALTIFFDFLTKNGIAERLEQWRDAANNAGDLQQ 519

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
            + P   ++   + L    +   E     K +  E+ +++       T          + 
Sbjct: 520 AQQPEQLWDLLIQLLKDYLAINPE-----KFDLDEFFNMLISAFKEATFSQIPSTLDAVN 574

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYI 681
           +      +   +  + + G   G  P    K  FL+    + L         L+  ++  
Sbjct: 575 LSEMGMVQTSGYKQVFIIGATSGNLPSIEKKPGFLTTENLNQLQSSFESDAYLEDNQRLN 634

Query: 682 GQAAHD---FEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTD-FFDNLKKRGQ 736
               +      +A     +  +  +   +N     S + QRL   G  +    +L ++ Q
Sbjct: 635 NLDQNYQFGLSLALAQDRVYISYPVLNASNEKLDPSIYYQRLQDYGAPEFSQHDLPEKMQ 694

Query: 737 CYL-----------------------DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--- 770
             L                            L  T K    K        +   +     
Sbjct: 695 DLLSFITNPDASLGYLAYINSNTSDEAIDELLKITQKYLPQKVKAVLDASDFDNQPEDIG 754

Query: 771 --------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                         S S+++    + Y  +    LKL      + + D    G  FH   
Sbjct: 755 EDLAAELYGKNLYSSVSQLETFYENSYEYFLTYGLKLRRR--LENEFDVIQAGNYFHETF 812

Query: 817 TELIKKRINK----------NTPEINHLMKQII-DSHFEKENLPPHIDIIWRHLFH---- 861
             L+K+   +             +  + ++ +I D     + +    +    H       
Sbjct: 813 DRLVKRLNEQHIDLADLSSVELEQQLNQVRDVIKDESKYAQLMNDPFNQYLFHCLDHTTS 872

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPA---------KMAIESIG----IHLTGFADRIDLL 908
           K++ ++ +   +  + +   +  +            + I  +     ++L G  DR+DL 
Sbjct: 873 KVAQNWRKSLAE--TPLRAKYSELSFGLDQKIKGISLDIPDLPGNHQVNLRGKIDRVDLA 930

Query: 909 ----KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS--FSQIDCRKVANL 960
               K   +  + DYK+             I  Q+      L   +  F+  D   +   
Sbjct: 931 NFAEKDQVLAQVIDYKSSAKKFDLGMFYNGIALQMISYLDVLTNNNCFFAGEDKLSLLGA 990

Query: 961 FY 962
           FY
Sbjct: 991 FY 992


>gi|240128645|ref|ZP_04741306.1| exodeoxyribonuclease V [Neisseria gonorrhoeae SK-93-1035]
 gi|268687035|ref|ZP_06153897.1| exodeoxyribonuclease V [Neisseria gonorrhoeae SK-93-1035]
 gi|268627319|gb|EEZ59719.1| exodeoxyribonuclease V [Neisseria gonorrhoeae SK-93-1035]
          Length = 1069

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 101/875 (11%), Positives = 209/875 (23%), Gaps = 80/875 (9%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W                R ++    S         +  A
Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKLW-----------RYLDDGRQSAPHRVALWEKLLA 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N  +    + ++      + ++ A +   E   +   L   L E+        A++T +
Sbjct: 311 QNLKMPSETVGSVNTGDRSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L+ L + +    +   +  L
Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D                 +
Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGAMRGGTDQLFTWKQAADRMVLGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +       +    L T            ++ +W          
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLPDR 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +          +   E         +++ +    +       I  I R +D E+      
Sbjct: 551 LFEAGADDQKAVQNLENEWVKWQAETELAQFSGQLP--PHTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-- 738
                E     R  L  +   R+   +     S  L  L+           ++  Q +  
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIE 724

Query: 739 -------------------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
                                     D+   L  T + P     +P              
Sbjct: 725 QHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPV-ENAEPVAEIGQD 783

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIKKRINKNTPEIN 832
           E  +   +P  V+ ++ L        +               I    I+ R      +  
Sbjct: 784 EFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFDPQHADQIAETYIEARREG--QDFA 841

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
               +I             +  +W+  F   +   
Sbjct: 842 QTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873


>gi|223041677|ref|ZP_03611874.1| exodeoxyribonuclease V gamma chain [Actinobacillus minor 202]
 gi|223017541|gb|EEF15955.1| exodeoxyribonuclease V gamma chain [Actinobacillus minor 202]
          Length = 1085

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/759 (10%), Positives = 180/759 (23%), Gaps = 76/759 (10%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +   L++   V     DP  P      TI V +    Q L+ +  E  G        
Sbjct: 10  LTALAEMLIHHQKVNPNE-DPFQPE-----TILVQSVGMAQWLQMQIAESMGVA------ 57

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDL 130
               G+      T+ L   Y L  P    + + E       L R+I     +     + L
Sbjct: 58  ----GNYEFPFPTSFLWQQYRLLFPHLPKENIFERGVMAWRLMRIIPAVLER--PEFQGL 111

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW----------EDLHALKNEKYGM- 179
                            LA  +AD+ D        W          E +  ++ + +   
Sbjct: 112 RAYLTHDKEQDSLKLYQLATKIADLFDQYLVYRPHWLVHWENGQWQEVVREIQIQPFSTN 171

Query: 180 ---------WWLLAA--DFLKIASKYWTERL-VELNASSPVGYQIALMRAEAEHLMKGTK 227
                     W        ++   K + E L    + +         +    E   K   
Sbjct: 172 LQTGIQENVHWQSLLWNLLIEDTRKDYDELLFTTSHRAYLQQKFFEKLEDLTEEEYKKLP 231

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN--TITEKSTNITSSN 285
             I + G +         +  ++ + +  +                  + + +     S 
Sbjct: 232 KRIFVFGISSLPTTQFATLLKLSEYCDVHLFFLNPSQMYWGDSIENAALEKMALKQQLSE 291

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
           T           +LL     +  D        +         +              +  
Sbjct: 292 TEIQQLLAQQGNQLLSMWGKQGRDFFDQLAEYSPEPIELFFENDQESNLSRLKQAILNND 351

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARR 401
                 + +  + + +    +   E   +   L    ++N         ++ AD      
Sbjct: 352 NPSYLEL-ENDNSIQIHNCHSAMREVEVLQNQLLRLFEQNPHLSPKDIIVMAADIEQYAP 410

Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK--- 451
               +           I   IS           S    +L          A+  L++   
Sbjct: 411 YINAVFSRYGREDNRYIPFTISDQKISQVDPVISSFLVMLKLRDSTFSAEALLDLLEVEA 470

Query: 452 --HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
                         L        + +    +      +  S           +       
Sbjct: 471 IGQQFGFNREDLTCLRHWIKESGIRSTLTIEQENGWQNYNSWENGLDRLLLGSCLKEENG 530

Query: 510 SRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
              +      +  L  + + +    +         +  +  IS W +     ++ V  + 
Sbjct: 531 IWQNTIAFNESYGLSAERVGKLAEFIEKLTAWSVLSLESHPISTWKQALEDLVKAVYQEN 590

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                 L+  +  + L +L + +++               +   ++ ++          +
Sbjct: 591 DASNDALFLIQ--QELEALEALVLQAKFDEPVAFEVIERALQDRLNSQSHVMHFMTG-KV 647

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
                L  R + F  + L G+NE  +P+    N F           +   +         
Sbjct: 648 NFCTLLPMRAIPFKVVCLLGMNEADFPRQPVINSFDLMQYHPRKGDRARREDDRY--LFL 705

Query: 689 EMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGG 724
           E       +   +   +    +     S  + + +    
Sbjct: 706 EALLSAEEVFYISYVGKSLVKDEEREPSVLVSQFVDYLA 744


>gi|315636565|ref|ZP_07891801.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315479214|gb|EFU69911.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 522

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 136/377 (36%), Gaps = 40/377 (10%)

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           S  + +LG LE+R ++FDT+I+   NE   PK + K+ FLS  ++   NL T        
Sbjct: 154 SGKITVLGLLETRAVSFDTVIVCDFNESYIPKISVKDKFLSTRLKQLANLPTQFDRESLQ 213

Query: 685 AHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            + ++    + +++  +    E N     SR+   L         ++   +   Y +   
Sbjct: 214 KYYYKRLISSSKNVFISYVNSETN---QISRFANELFEKNIATDTNDSFYKHILYDNHKI 270

Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               +     +S +  K  +      Y + ILK++        P
Sbjct: 271 SYFDEDIISKI---------DLTKFIWSATSFKNFLECKRRFYLQYILKINEH-TISLKP 320

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
              + G + H+I+ +   K    +           I+  F K         +   ++ K 
Sbjct: 321 KGYELGDIIHSILEDYYSKDNKNS-----------IEELFLKYKSSNPFLTLDLEVWKKK 369

Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
             +F E +++   + E I +      +     I++ G  DR+D  +    ++ DYKT   
Sbjct: 370 LLNFYEFDKQRLKNREIIMIEKEFNCSFN--NINIKGIIDRVDKFEDN-YEVIDYKTSST 426

Query: 924 PKK---ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
                 +T +K +D QL     AL+   F   + +     FY  L +    + I   +K 
Sbjct: 427 LSVDTLKTYEKSVDFQLEFYHIALQQ-LFKNSNIK----AFYYDLNECLLKEEIAIQEKL 481

Query: 981 YSADELSEKSLKNLIEI 997
               EL       L E+
Sbjct: 482 ----ELLSSKFDELKEL 494


>gi|312869864|ref|ZP_07730004.1| putative ATP-dependent nuclease subunit B [Lactobacillus oris
            PB013-T2-3]
 gi|311094604|gb|EFQ52908.1| putative ATP-dependent nuclease subunit B [Lactobacillus oris
            PB013-T2-3]
          Length = 1250

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 128/1081 (11%), Positives = 247/1081 (22%), Gaps = 198/1081 (18%)

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
             + SL  +          L     P +S I   + +A+++      L             
Sbjct: 74   QVLSLSRLAWYLLRDTPALQR---PRLSKIGLTMLVAKVVQDHAADL------------- 117

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW-------WLLAADFLK 189
             L  S A      + L D +  +        DL AL  +            WL     ++
Sbjct: 118  QLFASEAQQPGFIQKLTDQLTELANANVSAADLTALLRQAQHDDNASINQAWLAKMHDVE 177

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            +    + ER+               +    +      +    I       P   +++  +
Sbjct: 178  LIYHAYEERV--QGKFMGNTELYQQLAQFLQSQPAAKRMHFFIDRFAQFTPGEQQVVDAM 235

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
              +     V   LD   P       +E   +                 +L DF     ++
Sbjct: 236  ILNGASTTVSFVLDRGYPDQTHPDQSELPGSTDLFYPAAM-----QYHRLWDFARQHPQE 290

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            V  + NV      R      +              L+    N     +D+  I   N R 
Sbjct: 291  VDLVPNVLVATKDRVSPTLTAVDHFF--ADYIKKPLDLTAGNEVVDPADLQFITTVNRRT 348

Query: 370  EAISIAIALRMSLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTL 425
            E   +A  +   +       +   +++   +  + +         I +       +    
Sbjct: 349  ELERVATMIHQLVATKGYRYRDFLVLSRHLDKYQTLLAPTFAAHQIPVFNDHERRMDNHP 408

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVK---------------------------------- 451
              ++LT+L N          I  L+K                                  
Sbjct: 409  LVTLLTALFNLPLYHYRTADIMQLLKTWLLAEYQPATGDYQALDQDAVFTTENWCLKRAV 468

Query: 452  ----------HPLAKFGFPEK-----------YLSRAKNALELVALRGNKNSYDIMDLKS 490
                       PL + G                +        +      K      +L +
Sbjct: 469  EGQRVWTDAESPLWQVGDSTAAPVNQLQEQLSRVRAFVADRIMSFFADLKTVTTGRELAA 528

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS- 549
                 +   +    +  WQ   S  D +LA             L  Y      T  N   
Sbjct: 529  KTYQFLVDNRVVKRLTDWQKYQSTRDLDLARQPQQVWGTFCQILDEYVQLLGDTPVNADN 588

Query: 550  -------ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                    S+  +      Q   +        +      +        +I +   +    
Sbjct: 589  FTATLTNFSELLQAGFAAAQYSQIPATLDQVMVSETGIVQNQDRKIVFMIGSTDDVMPEV 648

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             +   ++T              +  L      + R   F       L+       T K  
Sbjct: 649  QQQESLLTDQDKELLANYLDPATQYLPAGPRDQLRTEPF-------LHYSGMMTGTEKLI 701

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS--LRENNIPTIASRWLQRLL 720
             L+     D    T   Y+   A  F+       L+ + +   R  +  +     L +L+
Sbjct: 702  MLAPTASDDDQPLTPSAYLTDMARYFDQPVAAVPLVASPAGQQRVPDYVSTPVATLSQLV 761

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY---------- 770
             +      D  K        W         +  + R  P    +   R            
Sbjct: 762  QVERQARNDQPKGPIVLAPGWQAVRQALVDEIAHLRHAPRAADQRAGRELAARLSLITAG 821

Query: 771  -------------------------------SFSEIKQLINDPYAVYARRILKLDFIPHF 799
                                           S S+++    +PY  + +  L L      
Sbjct: 822  FNYRNQVDDLGEQLAAALYLRHNHDQQILYSSISQLQDYYVNPYEYFLKYGLGLKKRDQL 881

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINK------NTPEINHLMKQIIDSHFEKENLP---- 849
                D    GT FH  +   +               E    +  +I              
Sbjct: 882  TMSVD--RIGTFFHKAMEWFVSAVNADQQLSFAGLAENPAQLNDLIKRALAVAKDDQPDL 939

Query: 850  ---------PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------------ 888
                                 +   + L  + K  +  + +   I               
Sbjct: 940  AILTASSNQAAFQYQQLTRIVRTMLTILCWQAKYTA-AQPLDTEIRFGRLGAAKEDDLRP 998

Query: 889  MAIESIG----IHLTGFADRIDLL-KSGF--VDITDYKTG-DNPKKETAQKLIDPQLSLE 940
            +          ++L G  DRID L +     + + DYK+G        A   +  QL   
Sbjct: 999  LEYPLRPANTHVYLRGRIDRIDQLNQDNKDYLTVVDYKSGNRIFDLTAAYYGLSLQLLAY 1058

Query: 941  AAALKAG-------SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
              A+ +                ++A   Y+ L                    + +   K 
Sbjct: 1059 LNAISSNRHQLPARLNPTAGDLQLAGALYLHLSNPVINAAKLKPGTDLDTVRMQQHQYKG 1118

Query: 994  L 994
            L
Sbjct: 1119 L 1119


>gi|118594718|ref|ZP_01552065.1| Inactivated superfamily I helicase-like protein [Methylophilales
            bacterium HTCC2181]
 gi|118440496|gb|EAV47123.1| Inactivated superfamily I helicase-like protein [Methylophilales
            bacterium HTCC2181]
          Length = 880

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/505 (14%), Positives = 151/505 (29%), Gaps = 38/505 (7%)

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
            +L + +W          +   E   L +          +SL                 ++
Sbjct: 381  SLRLREWVYQIEALWNEIKFSEINFLLSFEINNLNSLYASLHQLKNNEVVDGLIEFKTFL 440

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             ++   ++     PK +  S + I G  E+ +  +D + L  +N+  WP     N  L  
Sbjct: 441  KLLFIHLESW-PAPKKDGQSLIDIKGFYENPIKEYDAIWLMNMNDNHWPGKLMFNSLLPM 499

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             +Q   ++   E Y        +       +L  + S  + +   +          +   
Sbjct: 500  KLQKKYHIFDEEYYKQINTVHQDRLKKFGPNLTISFSQTDEDGNPLFCSN-NYFSDIKEG 558

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                   +  +   D    LD    +              +  +   + ++     P   
Sbjct: 559  LITKKRIEGKKSLNDVDFILDNYAPEV----------TGEKKISRGTACLENFQKCPAWA 608

Query: 786  YARRILKL-DFIPHFKKDPDRTDRGTLFHNIITELIKKRINK------NTPEINHLMKQI 838
            +    L          ++     RGT+ H ++    +K  N       +  +I + + QI
Sbjct: 609  FYENRLGAFKSQEDEVEELSPMARGTIAHELLEAFWRKYKNSEVLKSMSDEQIKNNITQI 668

Query: 839  IDSHFEKENLPPHIDIIWRHLFH-----KISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
            I+   +           ++         ++  ++L +E+  +   +           I  
Sbjct: 669  IEGKLKTLEASLPFLSPFQIKVQSNYFNRLLFNWLSYEKNHRGIFKVSSTEKAFTANIGR 728

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL--IDPQLSLEAAALKAGSFSQ 951
            +   L    DR+D    G + + DYKTG      +  +      QL L AA  +  + S 
Sbjct: 729  LSFKL--KIDRVDEYTDGSMIVIDYKTGSTTPNLSDYQGTIKSLQLPLYAAYSEIKNLSA 786

Query: 952  IDCRKVA---NLFYIRLKQKFKIDC--ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
            I   KV+      Y  L    ++         KK S + L     + +    +    G+ 
Sbjct: 787  IGIAKVSINDQKIY-GLTSHIQLPPDGDLVLSKKISWEHLIPSWQEQIFNAASGFLKGDA 845

Query: 1007 PFISHLRLSEKSNIQSEYDHLARVA 1031
               S     +K         + R+ 
Sbjct: 846  ---SITFTDQKDLDYCSVKSILRLG 867


>gi|315586350|gb|ADU40731.1| conserved hypothetical protein [Helicobacter pylori 35A]
          Length = 778

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/389 (15%), Positives = 128/389 (32%), Gaps = 50/389 (12%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ ++ +    E +     S  L  L
Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMVLSYIESETSKV---SNMLLEL 493

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +         +                         
Sbjct: 494 DLHIEPIKDAYTLFESTPLKDYQEEEIQAAIPKDFSFSASSLSAFL-------------- 539

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 Y R I +    P  +     +  G+L H ++ E  +   +KN   +   + Q++
Sbjct: 540 TCKRRFYYRYIKRFKESPKDE---SNSAIGSLLHELLKEAYE--KDKNLYALEERLIQLL 594

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKIFVNIPAKMAIESIGIHL 898
           +    K N+ P   +       KI  +F   E++   + I+ + +    +  I+  G+  
Sbjct: 595 E---TKGNITPKERLDTLIALKKI-QAFYVKEKERFHAKIKILDLEKSFETTIQ--GVAF 648

Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944
            G  DRID      + + DYK               G     E AQ   D Q+++ A AL
Sbjct: 649 KGHIDRIDKTADNEIILLDYKFKSDLKLDNMSEKQRGSLSPIEIAQISTDYQMAIYAFAL 708

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
           K   +           F+  L++   ++ 
Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEE 732


>gi|254673959|emb|CBA09743.1| exodeoxyribonuclease V gamma chain [Neisseria meningitidis
           alpha275]
          Length = 1069

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 106/901 (11%), Positives = 226/901 (25%), Gaps = 88/901 (9%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191
           L    +    LA  LADI D       +W D      + +L +++    W          
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              W  R ++    S         +               + G +   P   +L+  ++ 
Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           H +  +             W  + E +  +        T   + L   L        D  
Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
               +  E          + L    +D++N  +    + ++      + ++ A +   E 
Sbjct: 283 NEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLREL 342

Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421
             +   L   L E+        A++T +          +          +   +S     
Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477
                   L+ L + +    +   +  L++             +  L     A   V   
Sbjct: 403 RRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLV 535
            +       D        +        +P   + + ++       +    +       L 
Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTAMFGRFAAFLE 522

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           T            ++ +W       L+ +   E      +   E         +++ +  
Sbjct: 523 TLSDIVRIWRQPATVDEWVGRCRGLLETLFQAEADDQKAVQNLENEWVKWQAETELAQFS 582

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
             +       I  I R +D E+          +     +  R L F  + L GLN+G +P
Sbjct: 583 GQLP--QQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712
           +NT    F           +             E     R  L  +   R+   +     
Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696

Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------------LDYTTKQPH 753
           S  L  L+         N ++  Q +++                                
Sbjct: 697 SSLLGELIDTVAAMTGTNSRQLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAAL 756

Query: 754 YKRPKPFPPL-------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
            + P+P  P                  E  +   +P  V+ ++ L      H  +  +  
Sbjct: 757 GQTPEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEP-HIGEAWEPA 815

Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
           +     H      I     +   + +    +I             +  +W+  F   +  
Sbjct: 816 EPFEPQHAEQIAEIYIEARREGQDFSQTAARIGAESL---LPSGELGRLWQQDFQTAAKQ 872

Query: 867 F 867
            
Sbjct: 873 I 873


>gi|261365222|ref|ZP_05978105.1| exodeoxyribonuclease V, gamma subunit [Neisseria mucosa ATCC 25996]
 gi|288566304|gb|EFC87864.1| exodeoxyribonuclease V, gamma subunit [Neisseria mucosa ATCC 25996]
          Length = 1072

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 106/879 (12%), Positives = 231/879 (26%), Gaps = 75/879 (8%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            LA+  I V ++   + L        G  + +     SL   +  +    L+       P
Sbjct: 29  ALAAEQIVVQSQGMRRYLSVYLARELGVAANLQ---FSLPAGLTWQLMQKLIPDIPALSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       L  L    R +     +++       L    +    LA  LADI D     
Sbjct: 86  FSPEVMRWRLLDLFRSERFQTTSEFENVRSVLQSYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W D      L  L  ++    W           + W  R ++    S         +
Sbjct: 146 RPQWIDAWQEGKLLGLGEDEV---WQA---------QLW--RYLDDGNQSAPHRVALWEK 191

Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
             +            + G +   P   +L+  ++ H +  +             W  + E
Sbjct: 192 LLSSLDKAHLPERFFVFGISTMAPMYLQLLQKISEHCDVFVFALNP----SGQYWGNVIE 247

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            +  +   +    +   + L   L        D      +  +     +           
Sbjct: 248 AAQLLKGGDEADLSQTGHPLLASLGKQGRDFFDFLTEIGLEEQPVFEEVSDDTLLHCLQN 307

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALI 392
                    E+   ++      V ++ A +   E   +   L   L E+        A++
Sbjct: 308 DIQNLRMPSEHSRADLLD-DGSVRIVSAHSPLRELQILKDKLLRILHEHPDWQPHDIAVL 366

Query: 393 TADRNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
           T +          +          +   +S             L   L+ +    +   +
Sbjct: 367 TPNIEPYSPFIEAVFGQAQGGAQALPYSVSDVKLSRRQPLLYALEQTLDLLESRFEVDKV 426

Query: 447 ATLVKHPLA----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             L++  L          +  L     A   V    +       D        +      
Sbjct: 427 LPLLESGLVLRRFGLTADDLPLLHDTIAELNVHWGLDGTMRGAADNLFTWQQALERIVLG 486

Query: 503 THVPHWQSRLSEEDKELAVLL--VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
             +P   S L +        +  +D   +    + T            +  +WT+     
Sbjct: 487 WMLPDDGSPLWQNVSAWHGDVNRLDVFGRFAAFIRTLSRLAAEWRKPAAAEEWTERCRDL 546

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
           +Q++ L +      L  ++  + L+    +    G          I  I R +  E+   
Sbjct: 547 VQSLFLPDADDQYAL--QQFEQALAKWQEETALAGFSGTLPQHTVIRHIRRFLGSES--Q 602

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
                  +     +  R L F  + L GLN+G +P+NT    F           +     
Sbjct: 603 AGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPQKGDRARRDD 662

Query: 681 IGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
                   E     R  L  +   R   N+     S  +  L+              G+ 
Sbjct: 663 DRY--LFLEAIISARDILYLSYVGRSIRNDDELAPSALVSELIDTVAA-------MTGRR 713

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             +   +         +      P   +     +  +  + +N P     R   +  F  
Sbjct: 714 SKELAEQWVEQHPLQPFSHRYFIPDNISDDLFSTRQDYAEALNRP-----REQARPFFSE 768

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
             +++    +          + I    N     +   +         ++      +    
Sbjct: 769 ALEENSPAPNV------WQDDFILFWKNPVKAWLQQTL---GWREPYRDEAWESAEPFEP 819

Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
               KI+ ++L+   + Q   ++  V + A+  + +  +
Sbjct: 820 QRADKIAAAYLDARRQNQ-DFQETAVRLDAESLLPAGEL 857


>gi|317507957|ref|ZP_07965651.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316253745|gb|EFV13121.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 1070

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 93/905 (10%), Positives = 219/905 (24%), Gaps = 152/905 (16%)

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                      P      A+ L  ++     +  +     +L+           A+ L + 
Sbjct: 186  GRRMAEQLAGPERVTSAAEELERLV-RTLPKGPRQRAEPSLELRDAVAVQQARAELLGMV 244

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLM 246
            +K   ERL    A+             A          G    +++     +  A   L+
Sbjct: 245  AKV-QERLRSSGAADFATQTARAAELAARFAQVRAEESGAHRVVLLDEYQDTGHAQRMLL 303

Query: 247  STV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
              +   +  N   V    D H     W   +  +      +                   
Sbjct: 304  RALFGQDGDNDVAVTAVGDPHQAIYAWRGASAGNLAAFGDDFGARDS------------- 350

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                    L  +++     +++   +              +       +    +V +   
Sbjct: 351  --------LTLMTSWRNPVAVLGLANRTVAPLRRAGGASAVPELTARPEAPAGEVRVALF 402

Query: 365  DNEREEAISIAIALRMSLDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            ++  EE   IA  LR +  E     ++   A++      A  V   L   G+   +    
Sbjct: 403  EDAAEERAWIAERLRRAAAEADGTGSRPSMAVLVRRNADALAVADALASAGLEAQVVGLG 462

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
             L  T   S L ++L  +   +   A   ++  P  + G  +     A+ A         
Sbjct: 463  GLLDTPEVSDLLAMLELVADPSSSTAALQVLTSPRWRIGAADLAALSARAAELGARRPKR 522

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                D  +L   +   +A +               +           +      +   + 
Sbjct: 523  SAPKDSAELIDQLAGVLADEGAEQASLGDALADLGDLARYGPAGGARLAVLAGEVDRLRA 582

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              +            +      + +                  ++ +  +K +       
Sbjct: 583  QLDRP--------LPEFVTLVERTMGFAVEADAQARERLSAFASVVAEHAKGVAATGGST 634

Query: 600  --ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
              +  + ++ +   +  G  V         + +L    ++ L +D + +  L +GV+P  
Sbjct: 635  SLSGLVGYLRVAETVERGLPVGEVAPDPRKVQVLTVHAAKGLEWDVVAVAHLVKGVFPTG 694

Query: 658  TAKNPF-----------------------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
             A++ +                       L  +++++           +    +      
Sbjct: 695  RARSTWVGDLTELPPDDLGPLTSSQDRAELQEMLRAEREAAKEVADEEERRLGYVAVTRA 754

Query: 695  RHLIYT---RSLRENNIPTIASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRK 744
            +  +                 S +L                       +     L     
Sbjct: 755  KQTLLLSGHWWAEGVERALGPSAFLVEWRDALAEQGGMPDVWAESPAGEAANPLLGEAEG 814

Query: 745  LDYTTKQPHYKRPKPFP------------------------------------------- 761
            + +       +RP                                               
Sbjct: 815  VLWPADPLLGRRPSVERGADLVRAALAAEASSASFAAADPEDRDAELFAAAEALIAEREA 874

Query: 762  ---PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                  A+    + S++  L+ DP      R  +    P  +        GT FH  +  
Sbjct: 875  AAERAAAERSGLTVSDVVGLVVDPAEFARERARRGPRPPAREAQA-----GTDFHEWVRS 929

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
                       E+                     +        ++   FL+     +S  
Sbjct: 930  WYLSEELLGLDELPGAADD----------GWESAERGHAPRLRQM---FLDSPWAARS-- 974

Query: 879  EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
              + V  P ++ ++  G+ + G  D +     G   + D+KTG    ++        QLS
Sbjct: 975  -PVAVETPFELNLD--GVLVRGRIDAVFAQPGGGYVVVDWKTGRADPRKARA-----QLS 1026

Query: 939  LEAAA 943
            +   A
Sbjct: 1027 VYRLA 1031


>gi|256851164|ref|ZP_05556553.1| ATP-dependent nuclease subunit B [Lactobacillus jensenii 27-2-CHN]
 gi|260660588|ref|ZP_05861503.1| ATP-dependent nuclease subunit B [Lactobacillus jensenii 115-3-CHN]
 gi|282934630|ref|ZP_06339873.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii 208-1]
 gi|297206029|ref|ZP_06923424.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii JV-V16]
 gi|256616226|gb|EEU21414.1| ATP-dependent nuclease subunit B [Lactobacillus jensenii 27-2-CHN]
 gi|260548310|gb|EEX24285.1| ATP-dependent nuclease subunit B [Lactobacillus jensenii 115-3-CHN]
 gi|281301205|gb|EFA93506.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii 208-1]
 gi|297149155|gb|EFH29453.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii JV-V16]
          Length = 1151

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 118/940 (12%), Positives = 251/940 (26%), Gaps = 141/940 (15%)

Query: 154  DIIDIIET--EEKKWEDLHALKNEKY--GMWWLLAADFLKIASKYWTERLVELNASSPVG 209
             +I  I     E    D   L  + +            L I    + E            
Sbjct: 122  GLIKQIYQSINEVSSSDFDLLDAQSHVTDEETKNKLHDLAIIKTAFDE------------ 169

Query: 210  YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
               A++          T+  I +AGS      +   +    +  NG   +          
Sbjct: 170  ---AIVDRFITKQDFLTEMNIFLAGSNRLKDCSFYFVD--FSQFNGTEQVAIELFAQKAK 224

Query: 270  IWNTITEKSTNITSSNTTYSTHP---QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                          ++     +    Q ++ KL   L    E                  
Sbjct: 225  QVVLAFATEDGTIKASPEAGDYDYVVQKTIKKLQRRLSFTYEQY---------------- 268

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---D 383
               S +   T+  R        +   ++   +V LI+AD+  +EA  +A  +   +    
Sbjct: 269  --ASPVKDLTAKQRLDHYWTGDLDYDEQNKPNVQLIKADSRYDEAYFVARTIYQQVSLNK 326

Query: 384  ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               +   ++  + +         L + GI         +        + SL   +    +
Sbjct: 327  FRYQDFLVLAPNLHEYETYLTPILRQNGIPFFNDLQKEMKYHPLVIFIESLQTFLETGFE 386

Query: 443  FMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
              ++ +L+K  L    F   E    R  + LE  AL    N Y      +  +      K
Sbjct: 387  SASLFSLLKTRLFIPSFYQDEAAFLRDVDELENFALAHGINYYLWNRPLTSFVK----IK 442

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLT 557
                    ++   E  ++L  ++   +   I      +  K               TK  
Sbjct: 443  RPIIALDKRNNEVERLEKLRQVVFKELNNFIEQFKKAEEVKAGVKFFFDFLVKIGLTKRL 502

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET-GSCIKANAIEWIDIITRLIDGE 616
             +  +   +D++    +   ++    L +L +  +       + +A +++ I+       
Sbjct: 503  ESWRKQ-AVDKNDLQASQEPKQIWDLLLNLLNDFLLINKPEDQFSASDFLRILISGFKEA 561

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---- 672
                       + +      +  N+  + + G +    P+ +    FL+    + +    
Sbjct: 562  NFAQIPASLDAVSLSEMGMVQAKNYKNVFIIGASSNNLPQISNTPGFLTSENLAQISSAD 621

Query: 673  ---NLKTAEKYIGQAAHDFEMA---NGTRHLIYTRS-LRENNIPTIASRWLQRLLVLGGT 725
                L+  ++           A     +  +  +   L   N     S +  +L  LG  
Sbjct: 622  GDNALEDRQELANLDQDYQFGACLTLASNWVYISYPFLNTANESIEPSTYYTKLQKLGAR 681

Query: 726  DFFDNLKKRGQC---------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT- 769
            +       +                  YL         T     K   P    +      
Sbjct: 682  ELEQADLPKEDASDILSFTTNASASLGYLTSLLPSYQNTLLDLAKNYAPQKYTQLIQGRN 741

Query: 770  ----------------------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                                   S S+++    +    +    L+L      + + D   
Sbjct: 742  FNNQPVNLGQKLAKELYGLKLTSSVSQLETYYQNSLEYFFNYGLRLKPR--AENELDVIQ 799

Query: 808  RGTLFHNIITELIK-------KRINKNTPEINHLMKQ----IIDSHFEKENLPPHIDIIW 856
             G  FH     L+K            +  ++   + +    I      ++ L    +   
Sbjct: 800  AGNYFHQTFDYLVKYAQAHQYDLAALSDEQVLAALTEVRNQIHQEGSYEQLLSDPFNQYL 859

Query: 857  RHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPA---------KMAIES-IGIHLTGFAD 903
                 K   + +    K +   +     +  +           K  ++    I L G  D
Sbjct: 860  FTSLDKTV-NTVAFNWKKRMAQTPFRPAYSELAFGSGNKLAGLKFKLDQTREIDLRGKID 918

Query: 904  RIDLLK-SGFVD--ITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS-FSQIDCRKVA 958
            R+DL      +   + DYK +  N         I  Q+      L   + F   D   + 
Sbjct: 919  RVDLAPYKNELLGQVIDYKSSSKNFDLALFASGISLQMVSYLDVLAKNASFFGNDSLDLL 978

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
              FY  +    K     N   +  A+ L +K+L    + +
Sbjct: 979  GAFYQTIT---KQVERLNKPDQLDANLLPKKALAQAKQRL 1015


>gi|189346870|ref|YP_001943399.1| exodeoxyribonuclease V, gamma subunit [Chlorobium limicola DSM 245]
 gi|189341017|gb|ACD90420.1| exodeoxyribonuclease V, gamma subunit [Chlorobium limicola DSM 245]
          Length = 1077

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 114/948 (12%), Positives = 247/948 (26%), Gaps = 99/948 (10%)

Query: 19  REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78
             ++ AL    ++         P       I V ++   + +  E     G  +      
Sbjct: 12  ETLVDALAE--VLRRNPPSVFEPEK-----IVVQSRGMQRWISMELARRFGVWAGAE--- 61

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
               + + ++   ++ L+   +   S       L RL+    ++           S L  
Sbjct: 62  YPFPNRLLQQLFEEMELTQPDSEKFSKETMCWTLMRLLPEMLDRELFSPL----RSYLRN 117

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                    L+  +AD  D                       W           + W   
Sbjct: 118 DREGLKLFQLSGRIADTFDQYTLFRTDLLAAWEEGRNDGARDWQP---------ELWRAL 168

Query: 199 LVELNASSPVGYQIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
           + E +       +    ++     L       I + G +   P    ++  +A      I
Sbjct: 169 VAESSGKHRGRLKTEFCLKVRHAPLPAAFPKRISLFGISYMPPYHIGMIEALATRIPVNI 228

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
            L        + I +       +      +   +P   LA L        + +   G + 
Sbjct: 229 FLLSPTQEYWSDIVSRRKLFRMSEGERELSTEGNPL--LASLGRSGREFADLLLEAGGIE 286

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN---IQKCFSDVALIEADNEREEAISI 374
           NE          + L    SDM N      +             V +    N   E   +
Sbjct: 287 NEHDLYIEPADDTLLHALQSDMLNLSGTGEEGERRSSPDPADRSVQVHSCHNPLREVEVL 346

Query: 375 AIALRMSLDE----NKKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424
              L   L+       +   ++T +  +       +          +   I+    L   
Sbjct: 347 HDNLLDLLEHLPGLEPRDIVVMTPEIEIYAPYIATVFGVSGEGVPRLPHSIADRRMLDEG 406

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNS 482
             +  L  LL           I  L+  P    +F   E+ L   +  +    +R   + 
Sbjct: 407 GIAPALLKLLELYGSRLPAPEIFDLLSSPPVSRRFRLDEEELDTIRVWVADTRIRWGMDE 466

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                L  L   R  + +           + +E      +L   +      L       +
Sbjct: 467 RSRSGL-GLPPFRENSWRAGLERLLLGYAMPDEGVLSDGVLPFDVEGDAETLGKLADFID 525

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE-EGKTLSSLFSKIIETGSCIKAN 601
           +     +  D  +       +        +      E E   +++   ++ E  +     
Sbjct: 526 AVDALSARFDRPRTLDGWRDHFIWMLDTFIDADEEVERELSHIAAEIDRLTELAAEANFG 585

Query: 602 AIEWIDIITRLIDGETVKPKIEKS---STLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                 ++   + G   K ++        +     L  R + F  + + G+N+G +P+  
Sbjct: 586 GETAAPVMIAWLRGRLEKFEMGLGFMTGGITFCAMLPMRSIPFRVVAMIGMNDGAFPRQQ 645

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWL 716
               F     +     ++  +   +      + +    L  +   +   +N P   S   
Sbjct: 646 RLPGFDMMSREPRKGDRSV-RGDDRYLFLESILSARDVLYLSYVGQSIRDNTPQPPSVLA 704

Query: 717 QRLLVLG--------GTDFFDNLKKR---------------------GQCYLDWTRKLDY 747
             LL           G D    +  R                        +L   R+ + 
Sbjct: 705 SELLDAIERGFAFPEGEDAISRMVVRHRLQGFSPAYFTEGSPLFSYSADNFLALERRHER 764

Query: 748 TT------KQPHYKRP---KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF--- 795
                   + P   RP   +P P  +   R  +  ++ +   +P A +  R L L     
Sbjct: 765 NAGNGSRGRNPVEARPFMDEPLPEADDGDRRVTIDDLVKFFANPSAFFLDRQLGLKPSAA 824

Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
           +   ++       G   + +  EL+   +     E    +  +  S       P     +
Sbjct: 825 LRPLEEREPFGADGLDAYLMRQELLAAVLEGGKEEA---LLPLFRS--RGLLPPARHGEL 879

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
                      F +   +++ S     +       ++  G  LTG  D
Sbjct: 880 LFGELLAEVREFADRLPELKGSAAPAVLEAD----LDIGGFRLTGTLD 923


>gi|116249792|ref|YP_765630.1| ATP-dependent UvrD family DNA helicase [Rhizobium leguminosarum bv.
            viciae 3841]
 gi|115254440|emb|CAK05514.1| putative ATP-dependent UvrD family DNA helicase [Rhizobium
            leguminosarum bv. viciae 3841]
          Length = 1183

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 106/883 (12%), Positives = 234/883 (26%), Gaps = 86/883 (9%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            AR           +  +   +S   +    A A  LA+ +A  I           D   L
Sbjct: 297  ARRAQFLEKIFLTVKGEPKADSQFFVKAMLAEAPQLAEAIA--IARAHVA--ASRDRLKL 352

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG---- 228
                       A       +  + E   + +                +  +         
Sbjct: 353  MRMYGATH--AALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLD 410

Query: 229  ----PIIIAGSTGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITE 276
                 I++  +  + P    ++ ++A          P    +    D       +     
Sbjct: 411  RGIDHILVDEAQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSFQGARP 470

Query: 277  KSTNITSSNTTYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
            +  +  S  T                  S     D L+      K   N          V
Sbjct: 471  ERFSEESDRTRRRVSDSGQSFSSVRLPLSFRSTADVLEAVDHIFKTPENARGLSALGEPV 530

Query: 327  ISKSFL--PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL------ 378
            + +S     P   D+      E  +          A  E+      A  IA ++      
Sbjct: 531  VHRSSRIGHPGAVDLWEMIAPEAVVKEEDWTAPFDATPESAPAAILARRIAHSIGTLVGR 590

Query: 379  -------RMSLDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSIL 430
                   +  L E      L+         +   L  R  I +  +  + L++ +    L
Sbjct: 591  ETIVDKGKERLIEAGDILVLVRKRDAFVNALTRALKRRGDIPVAGADRLVLTSHIAVQDL 650

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY-DIMDLK 489
             +L   +    D +++A ++K PL      + +   A            ++   D  +L 
Sbjct: 651  LALGRFLLLPEDDLSLAAVLKSPLFDLSEDDIFAIAALRGDNESFWSHLRSFAADGTELF 710

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
               ++R+      +         +               Q +  L T  ++        +
Sbjct: 711  RAAVERLELFLRQSRSLSVHDFYARVLGSYGGR-----RQFLARLGTEVSDILDEFLTFT 765

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
            +   +         +   E         +++G+    +    +     ++A  +  +D  
Sbjct: 766  LDHESSGLPGLQSFISTLELEAPVMKREQDKGRNEVRIM--TVHASKGLEAPIVFLVD-- 821

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
                 G +          L ++ T          + +  L   +   + A+   L+    
Sbjct: 822  -----GGSKAFTHTHLPKLRLIETRPDEPPMPVWVPVSDLANSLTQDDAARIQMLAEEEY 876

Query: 670  SDLNLKTAEKYIGQAAHDFEMANG----TRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
              L      +   +              T H++ + +L +++    A+ +        G 
Sbjct: 877  RRLLYVAMTRAADRLVVCGYRGVRVNNDTWHMMISTALHDDHPHVEATTFSGSDGEWPGI 936

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
             +     +R    +D   +   + +       +P PP    PR  S S    +I++    
Sbjct: 937  KWRVPRVERSFERIDR-SQERGSEETLPDGLLRPLPPQAELPRPLSPSGAGTIIDEDEGG 995

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                        H  +     ++G L H ++  L +  + +     +   ++        
Sbjct: 996  LLVVSPLFGEKEHSDRSL---EKGRLIHRMLQALPEIPLAERPDAASRYAERAAR----- 1047

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFAD 903
                P +    R          L+ E        +    +     + +E     ++G  D
Sbjct: 1048 --FWPEV---ERRKLVDSVLKLLDEEGLQAVLGAQAQPEVSIMGTLTLEDRRYAVSGRID 1102

Query: 904  RIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAAL 944
            R+ +L    V I DYKT   P             QL++    L
Sbjct: 1103 RLAVLAD-RVVILDYKTNRVPPATEEAIPFAHRAQLAIYREIL 1144


>gi|240949821|ref|ZP_04754150.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus minor NM305]
 gi|240295738|gb|EER46433.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus minor NM305]
          Length = 1085

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 79/760 (10%), Positives = 179/760 (23%), Gaps = 78/760 (10%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +   L++   V     DP  P      TI V +    Q L+    E  G        
Sbjct: 10  LTALAEMLIHHQKVNPNE-DPFQPE-----TILVQSVGMAQWLQMRIAESMGVA------ 57

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDL 130
               G+      T+ L   Y L  P    + + E       L R+I           + L
Sbjct: 58  ----GNYEFPFPTSFLWQQYRLLFPHLPKENIFERGVMTWRLMRIIPSVLE--HPEFQGL 111

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW----------EDLHALKNEKYGM- 179
                            LA  +AD+ D        W          E +  ++++ +   
Sbjct: 112 RAYLTHDKEQDSLKLYQLATKIADLFDQYLVYRPHWLVHWENGQWQEVVREIQSQPFSAS 171

Query: 180 ---------WWLLAA--DFLKIASKYWTERL--VELNASSPVGYQIALMRAEAEHLMKGT 226
                     W        ++   K + E L      A     +   L     E   K  
Sbjct: 172 HQTGIQENVHWQSRLWNLLIEDTRKDYDELLFTTSHRAYLQQKFFDKLEDLIEEEYKKLP 231

Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN--TITEKSTNITSS 284
              I + G +         +  ++ + +  +                  + + +     S
Sbjct: 232 -KRIFVFGISSLPTTQFATLLKLSEYCDVHLFFLNPSQMYWGDSIENVALEKMALKQQLS 290

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
            T           +LL     +  D        +         +              + 
Sbjct: 291 ETEIQQLLAQQGNQLLSMWGKQGRDFFDQLAEYSPEPIELFFENDQERNLSRLKQAILNN 350

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLAR 400
                  + +  + + +    +   E   +   L    ++N         ++ AD     
Sbjct: 351 DNPSYLEL-ENDNSIQIHNCHSAMREVEVLQNQLLRLFEQNPHLSPKDIIVMAADIEQYA 409

Query: 401 RVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK-- 451
                +           I   IS           S    +L          A+  L++  
Sbjct: 410 PYINAVFSRYGREDNRYIPFTISDQKISQVDPVISSFLVMLKLRDSTFSAEALLDLLEVE 469

Query: 452 ---HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                          L        + +    +      +  S           +      
Sbjct: 470 AIGQQFGFNREDLTCLRHWIKESGIRSTLTIEQENGWQNYNSWENGLDRLLLGSCLKEEN 529

Query: 509 QSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
               +      +  L  + + +    +         +  +  IS W +     ++ V  +
Sbjct: 530 GIWQNTIAFNESYGLSAERVGKLAEFIEKLTAWSVLSLESHPISTWKQALENLVKAVYQE 589

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                  L+  +  + L +L + +++               +   ++ ++          
Sbjct: 590 NDASNDALFLIQ--QELEALEALVLQAKFDEAVAFEVIERALQDRLNSQSHVMHFMTG-K 646

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
           +     L  R + F  + L G+NE  +P+    N F           +   +        
Sbjct: 647 VNFCTLLPMRAIPFKVVCLLGMNEADFPRQPMINSFDLMQYHPRKGDRARREDDRY--LF 704

Query: 688 FEMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGG 724
            E       +   +   +    +     S  + + +    
Sbjct: 705 LEALLSAEEVFYISYVGKSLVKDEKREPSVLVSQFVDYLA 744


>gi|163867331|ref|YP_001608525.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476]
 gi|161016972|emb|CAK00530.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476]
          Length = 1157

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 91/827 (11%), Positives = 208/827 (25%), Gaps = 108/827 (13%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAG 234
             A     +  K +T                  +             + +      I++  
Sbjct: 340  AAFQLCAVYLKIYTNLKKANGFLDFDDLIERTLHLLQRKGASQWVHYKLDRGLDHILLDE 399

Query: 235  STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITE---KSTNITS 283
            +  + P   +++  +A           N   +    D       +         +     
Sbjct: 400  AQDTNPEQWQIIQLLAQEFFSGYSQRTNIRTLFAVGDEKQSIYSFQGAAPENFAANGRII 459

Query: 284  SNTTYSTHPQ-------YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
                  T+ Q       YS     D L       +   N        +  + ++      
Sbjct: 460  QKKAQQTNQQFEKIQLHYSFRSTADVLKSVDLVFETPENYKGLSAENTKTVHEAIRVHSP 519

Query: 337  SDMRNTDILENK----IPNIQKCFSDVALIEADNEREEAISIAIALRM--------SLDE 384
             ++   D +  +      +       +   E     + A +IA  L+          L  
Sbjct: 520  GEVIIWDAISKETSEFPHDWHLSVDHLDTPEVRLAEKIAETIADWLQKGEILPAKGRLIR 579

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                  L+         +   L    I +  +  + L+  +    L +L   + +  D +
Sbjct: 580  ASDIMILVRKRDKFVSALSRALKHLNIPVAGADRLQLTKHISIRDLMALGRFVLQPQDDL 639

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            ++A ++K PL  F   E Y   A    +L         +     D    +     T  + 
Sbjct: 640  SLACVLKSPLFAFSEEELYQLAAHRTGSLWQSLCTHASSQVSFKDAFERLNHY-RTLVDK 698

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
              V  + S +   DK    +L     +    L  +     +                 L+
Sbjct: 699  IPVFEFYSHILNNDKGRQKILSRLGSEANDVLDAFMDYTLAIQKTG-----LPGLQAFLE 753

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
             +   E                  +    +     ++A  +  +D         +     
Sbjct: 754  TLTASEPEIKREFEQNN-----EEIRIMTVHAAKGLEAAIVFLVD-------PGSAIWHP 801

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
            + +  L  +    ++            N            F +++ +  ++         
Sbjct: 802  QHAPHLLKVPLNNAQG-----------NGQQAFIWRPNEKFDTKLSKQAISHLKERAEEE 850

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                 +         ++             S    +L+          +K   +    W 
Sbjct: 851  YRRLLYVGMTRAEDRLFIC---GYKGQKTPSHTWLQLVKKALEPHAVAIKGPAEDIAAWR 907

Query: 743  R---------------KLDYTTKQPHY-------KRPKPFPPLEAQPRTYSFSEIKQLIN 780
                                                P    PL+    + S     +L +
Sbjct: 908  YCITSSSASINQEVSCAESQALPPLPAFFSHKVSVEPVLPKPLKPSVASLSIEADTELSS 967

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             P  ++   +L               + G L H ++  L      K      + +  I  
Sbjct: 968  SPKQLFTSPVLG----EINTNRAFFIEYGHLIHRLLQYLPDCPPQKRQDYARNYL-NIKA 1022

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
            SH+++      +  +W     KI      + + + S   +  V +   + I      ++G
Sbjct: 1023 SHWDESQRERALRHVW-----KILDHV--YLKPLFSEQSRAEVPLMGIVKIRGKEQAISG 1075

Query: 901  FADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKA 946
              DR+ + K+  +   D+KTG  P  +         Q++L    L+A
Sbjct: 1076 QIDRLYITKN-SIIFADFKTGIPPENEAAIAPHHWLQMALYRKLLQA 1121


>gi|325145090|gb|EGC67373.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           M01-240013]
          Length = 1069

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 107/903 (11%), Positives = 219/903 (24%), Gaps = 92/903 (10%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191
           L    +    LA  LADI D       +W D      + +L +++    W          
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              W  R ++    S         +               + G +   P   +L+  ++ 
Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           H +  +             W  + E +  +        T   + L   L        D  
Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
               +  E          + L    +D++N  +    + ++      + ++ A +   E 
Sbjct: 283 NEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLREL 342

Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421
             +   L   L E+        A++T +          +          +   +S     
Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477
                   L+ L + +    +   +  L++             +  L     A   V   
Sbjct: 403 RRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLV 535
            +       D        +        +P   + + ++       +    +       L 
Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTAMFGRFAAFLE 522

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           T            ++ +W       L+ +   E      +   E         +++ +  
Sbjct: 523 TLSDIVRIWRQPATVDEWVGRCRGLLKTLFQAEADDQKAVQNLENEWVKWQAETELAQFS 582

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
             +       I  I R +D E+          +     +  R L F  + L GLN+G +P
Sbjct: 583 GQLP--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712
           +NT    F           +             E     R  L  +   R+   +     
Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696

Query: 713 SRWLQRL----------------LVLGGTDFFDNLKKR-----------GQCYLDWTRKL 745
           S  L  L                  L          +R                D+   L
Sbjct: 697 SSLLGELIDTVAAMTGTNSRQLAQNLIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAAL 756

Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
             T  +P                     E  +   +P  V+ ++ L        +     
Sbjct: 757 GQT-PEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPA 815

Query: 806 TDR-GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
                     I    I+ R      +      +I             +  +W+  F   +
Sbjct: 816 EPFEPQHADQIAETYIEARREGR--DFAQTAARIGAESL---LPSGELGRLWQQDFQTAA 870

Query: 865 HSF 867
              
Sbjct: 871 KQI 873


>gi|313667895|ref|YP_004048179.1| exodeoxyribonuclease V [Neisseria lactamica ST-640]
 gi|313005357|emb|CBN86790.1| exodeoxyribonuclease V [Neisseria lactamica 020-06]
          Length = 1069

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 107/898 (11%), Positives = 223/898 (24%), Gaps = 82/898 (9%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSAEFQNGAEFEDVRCVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
           L    +    LA  LADI D       +W D              +    L         
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILGLGDDEIWQSKLWCYLD---- 176

Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
                +      +++AL     E L          + G +   P   +L+  ++ H +  
Sbjct: 177 -----DGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVF 231

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
           +             W  + E +  +        T   + L   L        D      +
Sbjct: 232 VFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLSEMEI 287

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
             E          + L    +D++N  +      ++      + ++ A +   E   +  
Sbjct: 288 EGETPVFEEGGRDTLLHVLQTDIQNLKMPSETAGSVNTDDGSIRIVSAHSPLRELQILKD 347

Query: 377 ALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTTLH 426
            L   L E+        A++T +          +          +   +S          
Sbjct: 348 KLLQILHEHPDWQPHDIAVLTPNIEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPF 407

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAKNALELVALRGNKNS 482
              L  L + +    +   +  L++             +  L     A   V    +   
Sbjct: 408 FYALECLSDLLESRFEVDKVLALLETAPVLCRFGLTEDDLPLLHDMVADLNVHWGLDGEM 467

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHILQCITPLVTYKTN 540
               D        +        +P   + + ++       +   D   +    + T    
Sbjct: 468 RGGTDRLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTDLFGRFAAFIETLSDI 527

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                   ++ +W       L+ +   E      +   E         +++ +    +  
Sbjct: 528 ARIWRQPATVGEWVARCRDLLETLFQVEGDDQKAVQSLENEWVKWQAETELAQFSGQLP- 586

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                I  I R +D E+          +     +  R L F  + L GLN+G +P+NT  
Sbjct: 587 -PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKA 643

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQ 717
             F           +             E     R  L  +   R+   +     S  L 
Sbjct: 644 AVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSLLG 701

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRK-------------------LDYTTKQPHYKRPK 758
            L+         N ++  Q +++                                 + P+
Sbjct: 702 ELIDTVAAMTGANSRQLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPE 761

Query: 759 PFPPLEAQPR-------TYSFSEIKQLINDPYAVYARRILKLDFI--PHFKKDPDRTDRG 809
           P  P    P             E  +   +P  V+ ++ L           +  +  +  
Sbjct: 762 PPQPFFDNPVESCEPVAEIGQDEFIRFWRNPVKVWLQQQLAWHEPYIDPAWEPAEPFE-P 820

Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
                I    I+ R      + +    +I             +  +W+  F   +   
Sbjct: 821 QHAEQIAEIYIEARREG--QDFSQTAARIAAESL---LPSGELGRLWQQDFQTAAKQI 873


>gi|254470933|ref|ZP_05084336.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062]
 gi|211960075|gb|EEA95272.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062]
          Length = 1156

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 82/814 (10%), Positives = 186/814 (22%), Gaps = 84/814 (10%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGY----QIALMRAEAEHL----MKGTKGPIIIAG 234
                      +Y+    +                 L RAEA       +      I++  
Sbjct: 345  AILILSDAVLRYYETEKLRRGYLDFEDLVVKSAQLLSRAEAAQWVQYKLDQGLDHILVDE 404

Query: 235  STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
            +  + P    ++  +A               +    D       +               
Sbjct: 405  AQDTSPRQWEVIRALAEEFFAGDGAREKVRTIFAVGDEKQSIYSFQGAVPAYFAEMRKFF 464

Query: 287  TYSTHPQY----------SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP-PD 335
                              S     D L    +                  + ++      
Sbjct: 465  ARRAEEAQKNFEGIELNLSFRSTPDVLGAVDKVFDTPETYKGLSQDNVAPVHEAIRHNDP 524

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNER-EEAISIAIALRMSLDE----NKKKSA 390
                        +          +  I   N     A  IA  ++   +           
Sbjct: 525  GRVEIWPLEEAVETLEPDDWTQPIDAIGTGNPMLRLATRIAEQIKDWDERNIAGPGDVLV 584

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            L+         +  EL R  +    S  + L+  +    L +L   I    D +++A ++
Sbjct: 585  LVRKRGPFVEALNRELKRLDVPAAGSDRLVLTDHIAVKDLVALGRFILLPEDDLSLACVL 644

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
            K PL      +         L  +A               L+     ++K  T     + 
Sbjct: 645  KSPLFGLLDDD---------LFEIAHETPGVPRPGTLWHELLRKSENSEKWQTVRKQLEV 695

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                 D          I+        ++     T  +  + ++  LT+T  ++       
Sbjct: 696  WRDRADFVPPFEFYAKIMGTDGYRQKFRERL-GTEVDDVLDEFLSLTLTYEKSGTPGMEG 754

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
             L   W  E    +    +        +  +  + ++    ++      P     + + +
Sbjct: 755  FLA--WLAEAPTEIKRELNAAKGMVRIMTVHGSKGLEAPYVILADGCNAPVSSLHAPVMV 812

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                         L+                   +   +  L L   E+        +  
Sbjct: 813  EKQRAGDTEAAPALVWL-----------PNKAQRTAWHEEALELLADEQKEEYRRLLYVA 861

Query: 691  ANGTRHLIYTRSLRENNIPTIASRW-LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
                +  +          P     + L R  ++       +       ++     ++   
Sbjct: 862  LTRAKDRLVVCGWSPKRGPHDECWYTLTRNGLIEEAREQTDANGEVSAWIWTKGGIEKPE 921

Query: 750  KQPHYKRPKPFPPLEAQPRTYS--FSEIKQLIN--DPYAVYARRILKLDFIPHFKKDPDR 805
                           A P   S   S  +++       A       +       K   + 
Sbjct: 922  PVLPQSEKAESQQQAAMPDWISKNVSAPERIRRLKPSAAFEEMEAKESIEQQDPKDALEA 981

Query: 806  TD--------RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                      RG + H ++  L     ++        +   +   FE +          R
Sbjct: 982  ARQPEDWPLVRGRIVHRLLEFLPDLPEDQRIVSTERFLASSLPERFEDK----------R 1031

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVD 914
                      L   E  +         +P +  +   +   + + G  DR+ L+    V 
Sbjct: 1032 ERLLDDVLGTLGAPEFAELFSANGRAEVPIQGMLTGEDGKPVEIFGLIDRL-LVNDEEVI 1090

Query: 915  ITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
            I D+KT        +   +    QL++    L  
Sbjct: 1091 ILDFKTNAYVPRSVQDVSETYVAQLAVYRKLLSE 1124


>gi|157738276|ref|YP_001490960.1| hypothetical protein Abu_2073 [Arcobacter butzleri RM4018]
 gi|157700130|gb|ABV68290.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
          Length = 783

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/377 (18%), Positives = 133/377 (35%), Gaps = 40/377 (10%)

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           S T+ +LG LE+R ++FDT+I+   NE   PK + K+ FLS  ++   NL T        
Sbjct: 415 SGTITVLGLLETRAVSFDTVIICDFNESYIPKISVKDKFLSTRLKQLANLPTQFDRESLQ 474

Query: 685 AHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            + ++    + +++  +    E N     SR+   L         ++   +   Y +   
Sbjct: 475 KYYYKRLISSSKNVFISYVNSETN---QISRFANELFEKNIVTDTNDSFYKHILYDNHKI 531

Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                               +     +S +  K  +      Y + ILK++        P
Sbjct: 532 SYFDEDIISKI---------DLTKFIWSATSFKNFLECKRRFYLQYILKINEH-TISLKP 581

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
              + G + H+I+ +   K    +           I+  F K         +   ++ K 
Sbjct: 582 KGYELGDIIHSILEDYYSKDNKNS-----------IEELFLKYKSSNPFLTLDLEVWKKK 630

Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD- 922
             +F E +++   + + I +      +     I++ G  DR+D  +    ++ DYKT   
Sbjct: 631 LLNFYEFDKQRLKNRKIIMIEKEFNCSFN--NINIKGIIDRVDKFEDN-YEVIDYKTSST 687

Query: 923 --NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
                 +T +K +D QL     AL+      +        FY  L +      +  +   
Sbjct: 688 LNVDTLKTYEKSVDFQLEFYYIALQQ-----LFKTPNIKAFYYDLNE----YLLKEEVAI 738

Query: 981 YSADELSEKSLKNLIEI 997
               EL       L E+
Sbjct: 739 QEKLELLSSKFDELKEL 755


>gi|313900244|ref|ZP_07833740.1| hypothetical protein HMPREF9406_0760 [Clostridium sp. HGF2]
 gi|312954953|gb|EFR36625.1| hypothetical protein HMPREF9406_0760 [Clostridium sp. HGF2]
          Length = 899

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/637 (13%), Positives = 185/637 (29%), Gaps = 69/637 (10%)

Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
              A N+R+E  + A  +    D +     +  A+      +     R+ I         
Sbjct: 187 FFHAVNKRQEIEACAQYIIE-HDLDADDIHITLANATYKPILAQIFQRYQIPYT------ 239

Query: 421 LSTTLHSSILTSLLNAIFKLN---DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
           L    H+SIL    +A+F      D   +  ++   +                 E +   
Sbjct: 240 LLQDSHASILPHRFSALFSYYLKPDTENLLRVLDCGVVHM--------------EQLQKL 285

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
            +       D++         +     +   +    ++ +E A L+   ++  + PL   
Sbjct: 286 KDYLDVFSCDIEEAFDHLQQIEDEGHILDALELAKLQKLEEEAELVRQQLVVYLRPLKQP 345

Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
            + +         +          +++  D+      L  E   K L     +  +    
Sbjct: 346 ISME---------AMIQTAASYVRESLRRDDADTKILLDIEAMLKELHPYILEKED---- 392

Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                   I      +DG T      + S   +    +S       L + G  +  +P  
Sbjct: 393 --------IAFFLYFLDGMTQSSAPTERSGAIVCDLRQSPFCR-KHLFVLGCTQKDYPAF 443

Query: 658 TAKNPFLSRVMQSDLNLKT--AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
             K         + ++       +Y         M      +  +  L       + +  
Sbjct: 444 QTKKGIFDENYHALISAYPSMERRYQFYLKQISAMLYAAPSVYVSYPLGTYEGKGMEAAL 503

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
                V        N K     Y  ++     +T             ++ +    S S +
Sbjct: 504 EIEDYVQKQHA---NPKAGSVAYPLYSSYEPVSTNITLSPEMAQALFVKDKMIRGSISAL 560

Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
           ++ +  P++ + R  L L               GTL H ++     K     T      +
Sbjct: 561 ERYVKCPFSYFLRYGLSLREPMKVGFPDSYA--GTLAHYLLETFTGKYGKAYTKVAEEKI 618

Query: 836 KQIIDSHFE-KENLPPHIDIIWRHLFHKISHSF-----LEHEEKIQSSIEKIFVNIPAKM 889
           ++++       +++ P ++    ++  +I  S      L  + +  S +           
Sbjct: 619 EEVLMKEIRIMQDVFPSLEKKLENVAQRILTSMTQTLGLLDDFEQHSILSPYLREKEFHY 678

Query: 890 AIESIG---IHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALK 945
           +I       + L G+ DRID     F+ I DYK+      +      +  QL   +  + 
Sbjct: 679 SIPLGDDISLALKGYIDRID-ASDEFLCILDYKSSAKMLSEANVFAALQLQLLTYS-IVC 736

Query: 946 AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
           +  F +    +V   FY+ LK +          ++  
Sbjct: 737 SKEFHK----RVIGSFYVSLKNENIPYTAGKLSRRKP 769


>gi|313673704|ref|YP_004051815.1| hypothetical protein Calni_1746 [Calditerrivibrio nitroreducens DSM
            19672]
 gi|312940460|gb|ADR19652.1| hypothetical protein Calni_1746 [Calditerrivibrio nitroreducens DSM
            19672]
          Length = 921

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/469 (15%), Positives = 151/469 (32%), Gaps = 79/469 (16%)

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            I   +     +  +      L I+G LE+R L F+ + +  +NEGV P     +P +   
Sbjct: 485  IFKEISKDILIPFEGSPLKGLQIMGILEARGLKFEHIFIPDMNEGVIPSVDKVDPLIPES 544

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725
            ++  + L + E+      ++F       + +         +    + SR++ +L      
Sbjct: 545  IKRIIGLPSYEEKEILMRYNFFRLVYSAKKVYLFFKTGVGDNSKFVRSRYVDQL------ 598

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                    R Q + +   +       P ++      P +   ++YS + +   ++ PY  
Sbjct: 599  -ILKEELDRNQEFANI-YQPKSNFFTPKHEDLSFQKPCDISLKSYSPTALDCYLSCPYRY 656

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIIT---ELIKKRINKNTPEINHLMKQIIDSH 842
            Y R I ++    +   D      G++ H I+    EL K   +    E    +   + S 
Sbjct: 657  YLRYIRQIPPAVNIDSDFKADRVGSIVHAILEETIELGKPVKDSFLVENALNIIDCVRSQ 716

Query: 843  -------------FEKENLPPHIDIIWRHLFHKISH----SFLEHEEKIQSSIEKIFVNI 885
                          +   L   +  +   +F KI       FL+     ++  + I +  
Sbjct: 717  NKRITTKINNEGNLKNYILD--MSELEYEMFRKILEYRFNRFLDVHFDDENLRDSIVMAK 774

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKL-- 932
               +        L G  DRID L+   + I DYKTG                +  +    
Sbjct: 775  EKGIKKG----KLEGVIDRIDKLRD-KLIIIDYKTGSSLKSPSKSKVTQLSDKIYELGIN 829

Query: 933  -----------IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
                          QL            S+    +   ++Y+  K    I   + +K+  
Sbjct: 830  REDLLYLKENLKSVQLLTYIVLAM----SKYKADEYEAIYYLFGKNNGNIKKFSVEKEVA 885

Query: 982  SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
               +            +  ++  E  +     L ++  +  EY+ + R 
Sbjct: 886  GIIDYI----------INHIEKTEHIYP----LPDRDCVYCEYNRMCRF 920


>gi|329667336|gb|AEB93284.1| ATP-dependent nuclease, subunit B [Lactobacillus johnsonii DPC
           6026]
          Length = 1158

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 113/1031 (10%), Positives = 258/1031 (25%), Gaps = 170/1031 (16%)

Query: 46  SVTIYVPTK-------RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98
            V I VP         RA+ +L              L  I S   +           +  
Sbjct: 32  DVFIIVPNHIKFTTEVRALSKLS-VLTNKKQVAVKKL-HILSFSRLAWYFLR---DEAIK 86

Query: 99  LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           L   + +   ++ L +++   +++L                         +  L  + + 
Sbjct: 87  LPQILDDAASVMLLEQIVKDHQDELKLFQNQTQVT---------------SGALRQMYEA 131

Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
           I +      +L  +  +K           L+I    + ERL E  A+        L+   
Sbjct: 132 ILSVRAGNIELDNIDEKKLNEETSYKIHDLRIIYDEFIERLSEKFAT--KDEMQLLLNEF 189

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                  +      +  +         +  ++                       +  K+
Sbjct: 190 LAKSNNLSTMEFYFSDFSHFSLQELTSVRLISKKAKNTT----------------LAFKT 233

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 N        Y + + +  L     +        +       +   S        
Sbjct: 234 KIGKIDNNAEPGDYDYVVQRTIGQL-----EHFWQNQQLDYQTQEYPLTQTSPSSLLNGV 288

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD 395
              T   + ++         +  ++AD+   EA  +A  +   +   +   +   ++  +
Sbjct: 289 WTKTSGFDERLSKF------LQPVKADSRYAEAYFVARTIYQQVALNNYRYQDFLVLAPN 342

Query: 396 RNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
            +         L +  I         +        + +L     +      +  L+K  L
Sbjct: 343 LSEYETYLTPILRQNQIPFFNDLQREMKYHPLVVAVENLQQIFKRGFQTDNVIALMKTQL 402

Query: 455 A--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
               +           + LE   L                   + +  +   +   +S  
Sbjct: 403 FIPDWYKNSARYQNDVDLLENFVLAHGIKGKLWT-------KSLKSFVDADVIALDKSEK 455

Query: 513 SEEDKELAVL-LVDHILQCITPLVTYKTNKNSTCGNLSIS--DWTKLTVTCLQNVCLDEH 569
             ED +      +D + +    L   +  +       +    +     +   +    D  
Sbjct: 456 EVEDLDRLRDYFIDALTKFFEQLDKEEDPQAGVTVFWNFLIKNRVAKRLESWRKEANDTG 515

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                   E+   TL+ L    +      K +  ++ D++                  + 
Sbjct: 516 DLQLAQQPEQVWSTLTDLLKDYL--LVANKFSVDQFFDLLISGFSEANFSQIPSTLDAVN 573

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYI 681
           I      +   +  + + G      P+      F S      LN        L+  +K  
Sbjct: 574 ISELGMVQGQGYKQVFIIGATSTNLPQIEKIPGFFSSENLEQLNEGNEANGYLEDQQKIN 633

Query: 682 GQAAHDF---EMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ- 736
               +      ++  +  +  +  +    N     S + ++LL L   D F         
Sbjct: 634 NLDQNYQFGNALSLASDKIYISYPVINTANEQLEPSIFYKQLLKLTRADEFAQHDLPQNN 693

Query: 737 -----------------------CYLDWTRKLDYTTK-----------------QPHYKR 756
                                     D    LD T +                  P    
Sbjct: 694 GDVLTFITNPEASLGYLTYLKNKAATDVESLLDMTEEKIGEIAKNVLEGSSFKNIPQDLS 753

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
           P+    L       S S+++    + +  +    L L     F+ + D    G  +H   
Sbjct: 754 PELAQQLYGDRIETSVSQLETYYQNSFEYFLNYGLHLKKR--FENELDVIQAGNYYHETF 811

Query: 817 TELIKKRIN------KNTPEINHLMKQIIDSHFEKEN-----LPPHIDIIWRHLFHKISH 865
             L+K+           T E    +   +    ++E      L    +    H   + + 
Sbjct: 812 DYLVKRIKEKKLNFADLTEEKLGELLIEVREELKEEGRYRQLLNDPFNKYLFHKLDQTTA 871

Query: 866 SFLEHEEKIQSS--IEKIFVNIPAK--MAIESIG------------IHLTGFADRIDLLK 909
           +   +     +       +  +       +  +             + L G  DR+DL +
Sbjct: 872 NVAHYWHSNVNKTTFRPQYSELSFGKNQKVSGLSYSWKDDNNKKKIVDLRGKMDRVDLAQ 931

Query: 910 -SGFVD--ITDYKTGDNPKKETAQKLI-----DPQLSLEAAALKAGS--FSQIDCRKVAN 959
            +  V   + DYK+      +     +       Q+      LK  +  F+Q     V  
Sbjct: 932 VNDRVLGEVIDYKS----SAKKFDLGLFANGISMQMISYLEVLKNNNKFFAQGKDLDVLG 987

Query: 960 LFYIRLKQKFK 970
            FY  +    +
Sbjct: 988 AFYQSITSSLE 998


>gi|298369988|ref|ZP_06981304.1| exodeoxyribonuclease V, gamma subunit [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281448|gb|EFI22937.1| exodeoxyribonuclease V, gamma subunit [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 1070

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 111/902 (12%), Positives = 239/902 (26%), Gaps = 92/902 (10%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L +  I V ++   + L        G  + +     SL   +  +    L+       P
Sbjct: 29  ALVAEQIVVQSQGMRRYLSVYLARELGVAANLQ---FSLPAGLTWQLMQKLIPDIPALSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       L  L    R +     +++       L    +    LA  LADI D     
Sbjct: 86  FSPEVMRWRLLDLFRSERFQTASEFENVRSVLQSYLGSGDSADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W D      L  L  ++    W           + W  R ++    S         +
Sbjct: 146 RPQWIDAWQEGKLLGLGEDEV---WQA---------QLW--RYLDDGNQSAPHRVALWEK 191

Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
             +            + G +   P   +L+  ++ H +  +            +     +
Sbjct: 192 LLSSLDKAHLPERFFVFGISTMAPMYLQLLQKISEHCDVFVFALNPSGQYWGNVIEAA-Q 250

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV--SNEMYGRSMVISKSFLPP 334
                  ++ + + HP      LL  L  +  D           E      V   + L  
Sbjct: 251 LLKGGDEADLSQTGHP------LLASLGKQGRDFFDFLTEIGLEEQPVFEEVSDDTLLHC 304

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSA 390
             +D++N  +              V ++ A +   E   +   L   L E+        A
Sbjct: 305 LQNDIQNLRMPSEHSRTDLLGDGSVRIVSAHSPLRELQILKDKLLRILHEHPDWQPHDIA 364

Query: 391 LITADRNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
           ++T +          +          +   +S             L   L+ +    +  
Sbjct: 365 VLTPNIEPYSPFIEAVFGQAQGGAQALPYSVSDVKLSRRQPLLYALEQTLDLLESRFEVD 424

Query: 445 AIATLVKHPLA----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
            +  L++  L          +  L     A   V    +       D        +    
Sbjct: 425 KVLPLLESGLVLRRFGLTADDLPLLHDTVAELNVHWGLDGTMRGAADNLFTWQQALERIV 484

Query: 501 NNTHVPHWQSRLSEEDKELAVLL--VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
               +P   S L +        +  +D   + +  + T            +  +WT+   
Sbjct: 485 LGWMLPDDGSPLWQNVSAWHGDVNRLDVFGRFVAFIRTLSRLAAEWRKPAAAEEWTERCR 544

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
             +Q++ L +      L  ++  + L+    +    G          I  I R +  E+ 
Sbjct: 545 DLVQSLFLPDADDQYAL--QQFEQALAKWQEETALAGFSGTLPQHTVIRHIRRFLGSES- 601

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                    +     +  R L F  + L GLN+G +P+NT    F           +   
Sbjct: 602 -QAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPQKGDRARR 660

Query: 679 KYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
                     E     R+ L  +   R   N+     S  +  L+           K+  
Sbjct: 661 DDDRY--LFLEAIISARNILYLSYVGRSIRNDDELAPSALVSELIDTVAAMTGRRSKELA 718

Query: 736 QCYLDW----------------------TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
           + +++                       TR+          ++ +PF     +  + + +
Sbjct: 719 EHWVEQHPLQPFSHRYFIADNISDDLFSTRQDYADALNRPREQARPFFSEALEENSPAPT 778

Query: 774 EIK----QLINDPYAVYARRILKLDFI--PHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             +    +   +P   + ++ L           +  +  +           L  +R N++
Sbjct: 779 VWQDDFIRFWKNPVKAWLQQTLGWREPYRDEAWESAEPFEPQRADKIAAAYLDARRHNQD 838

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
             E    +        E       +  +W+  F   +   ++        +      I  
Sbjct: 839 FQETAVRLDA------ESLLPAGELGKLWQQNFQAAAKR-IDGALLQSPKLPPFAYEIQF 891

Query: 888 KM 889
             
Sbjct: 892 DG 893


>gi|194099143|ref|YP_002002228.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae NCCP11945]
 gi|239999442|ref|ZP_04719366.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae 35/02]
 gi|268595261|ref|ZP_06129428.1| exodeoxyribonuclease V [Neisseria gonorrhoeae 35/02]
 gi|193934433|gb|ACF30257.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae NCCP11945]
 gi|268548650|gb|EEZ44068.1| exodeoxyribonuclease V [Neisseria gonorrhoeae 35/02]
 gi|317164690|gb|ADV08231.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 1069

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 101/876 (11%), Positives = 217/876 (24%), Gaps = 68/876 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W             W  R ++    S         +  A
Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N  +    + ++      + ++ A +   E   +   L   L E+        A++T +
Sbjct: 311 QNLKMPSENVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L  + + +    +   +  L
Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D                 +
Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQAADRMILGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +    +       L T            ++ +W       L+ 
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +          +   E          +    G   +      I  I R +D E+      
Sbjct: 551 LFQAGPDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                E     R  L  +   R+   +     S  L  L+         N ++  Q +++
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMTGTNSRQLAQNWIE 724

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                        Y +           RT   + + Q    P   + + +   + +    
Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPVENAEPVAEIG 781

Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
           +D                  +  +     +     +  I   +E                
Sbjct: 782 QDE------------FIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFEPQHA------ 823

Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
            +I+ +++    +      +    I A+  + S  +
Sbjct: 824 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 858


>gi|302869750|ref|YP_003838387.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
 gi|302572609|gb|ADL48811.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
          Length = 1134

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 115/1078 (10%), Positives = 250/1078 (23%), Gaps = 153/1078 (14%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTIL----------PIIKSLGDVVEEKFTADLLL 95
             +     T++A  EL         +    L          P+           +   ++ 
Sbjct: 85   HILGLTFTRKAAGELAHRVRTRLDQLIRRLGRQGRDPHDDPLAGEPTVSTYHSYAGRIVT 144

Query: 96   SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155
             + L        RLL  A       + L         E            + LA  L + 
Sbjct: 145  EHGLRAGYEPTTRLLTEASRWQ-LVDLLVRNYDGDMSEVDRMPSTITDAVLALAGELDEH 203

Query: 156  IDIIETEEKKWEDLHALKNEKYGM----------------WWLLAADFLKIASKYWTERL 199
            +          ++L A     +                          L    + +  R 
Sbjct: 204  L-------VDPDELAAWTGRFFADVQSRPGRVYADVRKALQLQRTRLKLLPLVRAYARRK 256

Query: 200  VELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
             +  A           R   +H     + +     +++     +  A   L++ +     
Sbjct: 257  DDFEAMDFADQLARAARVARDHPGVGVIERDRFRVVLLDEYQDTSHAQVVLLNALFG--G 314

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
            G  V    D       W   +  + +   +    +      +  L      + E +    
Sbjct: 315  GHPVTAVGDPCQSIYGWRGASAGTLDRFPAEFARTDGSPADVLSLTTSWRNRPEILGVAN 374

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
             +S  +      + +        D               +    V     +   +EA  I
Sbjct: 375  TLSVPLRAAGARVPELHAALSVRDPI------PHRTPGGQAGGTVHCALLETYADEADWI 428

Query: 375  AIALRMSLD---------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            A ++  +                 + +  +A++   R+    ++  L   G+ +D+    
Sbjct: 429  ADSVLAAWRGAAGMPGALPEHIPADRRPTTAVLVRLRSQIPAIEAALRARGLPVDVVGLG 488

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
             L  T     +   L  +    D  A+  L+     + G  +      +      + R  
Sbjct: 489  GLLDTPEVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRARAIARSRREL 548

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                        +    AT              S E           +      L     
Sbjct: 549  TGDEGPEITVDALD--EATLVEALADLGPAQAYSAEGYARLRSYGMELALLRYRLDQSLP 606

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
             +       +I    ++ V   ++   D      +L    +            ET     
Sbjct: 607  -ELIADIERTIGLDVEVAVRAGRDGAGDAGLARAHLDALGDVAA-----RFSGETPGATL 660

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
            A  + ++        G         +  + +L    ++ L +D + + G+  GVWP    
Sbjct: 661  AGFLAYLAAAEDEERGLAPGEVEVVAGAVQVLTAHAAKGLEWDVVAVAGMTRGVWPGPVR 720

Query: 660  KNPFL-------------SRVMQSDLNLKTAEKYIGQA-------------------AHD 687
             +                      +L L  AE   G A                      
Sbjct: 721  NSDHWLGGLGVLPFPLRGDADGLPELALPEAEDQRGVARALTDFTDAWRAHDEREERRLA 780

Query: 688  FEMANGTRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
            +      R L+                 S +L+ +          ++             
Sbjct: 781  YVAVTRPRRLLLCSGYWWGEGTKRFRGPSVFLREVHDACLAGGDGHVVDAWTPEPAGDAV 840

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP---------------------Y 783
               T      + P           T + + +++ + DP                      
Sbjct: 841  NPTTETVLRAEWPADPLGTRRPALTEAAALVRRHLADPETARREAAVLATTGAADDAEVA 900

Query: 784  AVYARRILKLDFIPHFKKDPDRTDR---------------------GTLFHNIITELIKK 822
                   L L       +  +  +                             +      
Sbjct: 901  RWRREADLLLAERAELARQAEAVEVELPGQLSVTQLVALRRDPEALARTLRRPMPTEPNP 960

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
               + T     L ++         +  P            ++           +    + 
Sbjct: 961  YARRGTAFHAWLEQRFGTDRLLDVDELPGAADEDAAPDEALAELQERFLAGEWADRVPVE 1020

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
            V +P    I   G+ + G  D +     G  D+ D+KTG  P    A      QL++   
Sbjct: 1021 VEVPFATVIA--GVVIRGRMDAVFARPGGRYDVVDWKTGRQPAGREADAA-AVQLAVYRL 1077

Query: 943  ALKAGSFSQIDCRKVANLF-YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            A      + +   +V   F Y+R     +   + + +   +      +   +L E   
Sbjct: 1078 AWAE--LAGVPVDRVGAAFHYVRDSATVRPADLLDAEGLAALVAAVPEIPGDLPERAN 1133


>gi|315503768|ref|YP_004082655.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315410387|gb|ADU08504.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 1134

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 115/1078 (10%), Positives = 250/1078 (23%), Gaps = 153/1078 (14%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTIL----------PIIKSLGDVVEEKFTADLLL 95
             +     T++A  EL         +    L          P+           +   ++ 
Sbjct: 85   HILGLTFTRKAAGELAHRVRTRLDQLIRRLGRQGRDPHDDPLAGEPTVSTYHSYAGRIVT 144

Query: 96   SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155
             + L        RLL  A       + L         E            + LA  L + 
Sbjct: 145  EHGLRAGYEPTTRLLTEASRWQ-LVDLLVRNYDGDMSEVDRMPSTITDAVLALAGELDEH 203

Query: 156  IDIIETEEKKWEDLHALKNEKYGM----------------WWLLAADFLKIASKYWTERL 199
            +          ++L A     +                          L    + +  R 
Sbjct: 204  L-------VDPDELAAWTGRFFADVQSRPGRVYADVRKALQLQRTRLKLLPLVRAYARRK 256

Query: 200  VELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
             +  A           R   +H     + +     +++     +  A   L++ +     
Sbjct: 257  DDFEAMDFADQLARAARVARDHPGVGVIERDRFRVVLLDEYQDTSHAQVVLLNALFG--G 314

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
            G  V    D       W   +  + +   +    +      +  L      + E +    
Sbjct: 315  GHPVTAVGDPCQSIYGWRGASAGTLDRFPAEFARTDGSPADVLSLTTSWRNRPEILGVAN 374

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
             +S  +      + +        D               +    V     +   +EA  I
Sbjct: 375  TLSVPLRAAGARVPELHAALSVRDPI------PHRTPGGQAGGTVHCALLETYADEADWI 428

Query: 375  AIALRMSLD---------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            A ++  +                 + +  +A++   R+    ++  L   G+ +D+    
Sbjct: 429  ADSVLAAWRGAAGMPGALPEHIPADRRPTTAVLVRLRSQIPAIEAALRARGLPVDVVGLG 488

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
             L  T     +   L  +    D  A+  L+     + G  +      +      + R  
Sbjct: 489  GLLDTPEVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRARAIARSRREL 548

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                        +    AT              S E           +      L     
Sbjct: 549  TGDEGPEITVDALD--EATLVEALADLGPAQAYSAEGYARLRSYGMELALLRYRLDQSLP 606

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
             +       +I    ++ V   ++   D      +L    +            ET     
Sbjct: 607  -ELIADIERTIGLDVEVAVRAGRDGAGDAGLARAHLDALGDVAA-----RFSGETPGATL 660

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
            A  + ++        G         +  + +L    ++ L +D + + G+  GVWP    
Sbjct: 661  AGFLAYLAAAEDEERGLAPGEVEVVAGAVQVLTAHAAKGLEWDVVAVAGMTRGVWPGPVR 720

Query: 660  KNPFL-------------SRVMQSDLNLKTAEKYIGQA-------------------AHD 687
             +                      +L L  AE   G A                      
Sbjct: 721  NSDHWLGGLGVLPFPLRGDADGLPELALPEAEDQRGVARALTDFTDAWRAHDEREERRLA 780

Query: 688  FEMANGTRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
            +      R L+                 S +L+ +          ++             
Sbjct: 781  YVAVTRPRRLLLCSGYWWGEGTKRFRGPSVFLREVHDACLAGADGHVVDAWTPEPAGDAV 840

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP---------------------Y 783
               T      + P           T + + +++ + DP                      
Sbjct: 841  NPTTETVLRAEWPADPLGTRRPALTEAAALVRRHLADPETARREAAVLATTGAADDAEVA 900

Query: 784  AVYARRILKLDFIPHFKKDPDRTDR---------------------GTLFHNIITELIKK 822
                   L L       +  +  +                             +      
Sbjct: 901  RWRREADLLLAERAELARQAEAVEVELPGQLSVTQLVALRRDPEALARTLRRPMPTEPNP 960

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
               + T     L ++         +  P            ++           +    + 
Sbjct: 961  YARRGTAFHAWLEQRFGTDRLLDVDELPGAADEDAAPDEALAELQERFLAGEWADRVPVE 1020

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
            V +P    I   G+ + G  D +     G  D+ D+KTG  P    A      QL++   
Sbjct: 1021 VEVPFATVIA--GVVIRGRMDAVFARPGGRYDVVDWKTGRQPAGREADAA-AVQLAVYRL 1077

Query: 943  ALKAGSFSQIDCRKVANLF-YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            A      + +   +V   F Y+R     +   + + +   +      +   +L E   
Sbjct: 1078 AWAE--LAGVPVDRVGAAFHYVRDSATVRPADLLDAEGLAALVAAVPEIPGDLPERAN 1133


>gi|332669680|ref|YP_004452688.1| UvrD/REP helicase [Cellulomonas fimi ATCC 484]
 gi|332338718|gb|AEE45301.1| UvrD/REP helicase [Cellulomonas fimi ATCC 484]
          Length = 1166

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 97/903 (10%), Positives = 231/903 (25%), Gaps = 129/903 (14%)

Query: 190  IASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATAR 244
                 + ER    +A           R      E     +     +++     +  A   
Sbjct: 242  DLVAEYRERKRAADAIDFGDQVALAARLARDVPEVAAGERDRFRVVLLDEYQDTSYAQLT 301

Query: 245  LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
            L+  +    +G  V    D H     W   +        ++              +  L 
Sbjct: 302  LLGALFG--DGHPVTAVGDPHQSIYGWRGASAGGLESFPTSFPAVDADGRRRPADVHVLS 359

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                + +R+ + +N + G     +     P  +                     V    A
Sbjct: 360  TSWRNDRRILDAANVVAGPLRAAAARVEVPVLAA------------RPGAGDGRVHAHVA 407

Query: 365  DNEREEAISIAIALRMSLDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            D   +EA ++A  +            +  +A++   R+    V+  L   G+ +++    
Sbjct: 408  DTVEDEARAVAEFVAARWRPASPGTERVTAAVLCRKRSQFPAVQRALRAAGLPVEVVGLG 467

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
             L  T     L + L A    +   A+  L+     + G  + +   A            
Sbjct: 468  GLLATPEVVDLVAALQAAHDPSRGDALMRLLTGGRTRLGAADLHALGAWADELAGRAGRR 527

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                  +    +    I    ++     W+SR   E  +     +  + + +T L ++  
Sbjct: 528  AGRDTGVQADVVDERSIVDALDDLPRSGWRSRNGRELSDAGRARLAELARLLTALRSHTY 587

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
                      +++  +L    ++                +  + ++  F++  +  +   
Sbjct: 588  LAVPEL----VAEAERLLGLDIEVAARAGTTPGRARANLDAFRDVAVEFARTADHPTLGG 643

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
               + W+D       G  +         + ++    ++ L +D + + GL +G+ P    
Sbjct: 644  F--LTWLDAAEVRESGLDMPVAEPDPDAVQVITIHAAKGLEWDVVAVAGLVDGILPATRT 701

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHD-------------------------------- 687
            +     +       L T    +    HD                                
Sbjct: 702  RGQDGPKDSAWLTGLGTLPYPLRGDRHDLPVLAYAGAADHKDLDERRKQFLLDAGLHQVA 761

Query: 688  ------FEMANGTRHLIYTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                  +      R  +   +    +   P   S +L+ L   G       +++  Q   
Sbjct: 762  EERRLAYVALTRARSDLLLTAAWWGDSARPRELSSFLEELAEAGVVGSGSWVERPEQGVG 821

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL------------------IND 781
            +   +L  T + P         P        + + ++                    + D
Sbjct: 822  NPRDELVLTAQWPADPFAVDGGPGRRPAVEAAATLVRDALAAGADSSGQPGGSRWEDLAD 881

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
                   R+ + +           +    L H    E  +        E +   ++    
Sbjct: 882  RLLAEQERVRRPERGVELPAHLSASSLVRL-HADPAEFARGLRRPVPREPSPQARRGTRF 940

Query: 842  HFEKENLPPHIDIIWRHLF--------------HKISHSFLEHEEKIQSSIEKIFVNIPA 887
            H   E       ++                     +  SFL      +S    + + +  
Sbjct: 941  HAWVEGWYGAATLVDLDALPGADDDSDLVDLEEAALRASFLRTPWADRS---PLAIEVDV 997

Query: 888  KMAIESIGIHLTGFADRIDLLKSGF------------------VDITDYKTGDNPKKETA 929
            + +++  G  L    D +                         V + D+KTG  P    A
Sbjct: 998  ETSVD--GYVLRSRIDAVFADDEAGREAAPQPAGAGAGAAVRPVVVVDWKTGAPPSDPAA 1055

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
            +   + QL++   A             +    +  +     +       +    D L   
Sbjct: 1056 RASRELQLAVYRLAWSR---WTGTPLDLVRAAFCYVGTGETVYPERLLAEPEITDLLRRA 1112

Query: 990  SLK 992
            +  
Sbjct: 1113 TAA 1115


>gi|240081301|ref|ZP_04725844.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae FA19]
 gi|268597406|ref|ZP_06131573.1| exodeoxyribonuclease V [Neisseria gonorrhoeae FA19]
 gi|268551194|gb|EEZ46213.1| exodeoxyribonuclease V [Neisseria gonorrhoeae FA19]
          Length = 1069

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 99/874 (11%), Positives = 210/874 (24%), Gaps = 78/874 (8%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W                R ++    S         +  A
Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKLW-----------RYLDDGRQSAPHRVALWEKLLA 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N  +    + ++      + ++ A +   E   +   L   L E+        A++T +
Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L  + + +    +   +  L
Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D                 +
Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGAMRGGTDQLFTWKQAADRMVLGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +       +    L T            ++ +W          
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLPDR 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +          +   E         +++ +    +       I  I R +D E+      
Sbjct: 551 LFEAGADDQKAVQNLENEWVKWQAETELAQFSGQLP--PHTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-- 738
                E     R  L  +   R+   +     S  L  L+           ++  Q +  
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIE 724

Query: 739 -------------------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
                                     D+   L  T + P     +P              
Sbjct: 725 QHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPV-ENAEPVAEIGQD 783

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
           E  +   +P  V+ ++ L      H  +  +  +     H            +   + + 
Sbjct: 784 EFIRFWRNPVKVWLQQQLAWSEP-HIGEAWEPAEPFDPQHAEQIAETYIGARREGQDFSQ 842

Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
              +I             +  +W+  F   +   
Sbjct: 843 TAARIAAESL---LPSGELGRLWQQDFQTAAKQI 873


>gi|261378928|ref|ZP_05983501.1| exodeoxyribonuclease V, gamma subunit [Neisseria cinerea ATCC
           14685]
 gi|269144625|gb|EEZ71043.1| exodeoxyribonuclease V, gamma subunit [Neisseria cinerea ATCC
           14685]
          Length = 1068

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 102/875 (11%), Positives = 221/875 (25%), Gaps = 69/875 (7%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFAHIQKFKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLA-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNMLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191
           L  S +    LA  LADI D       +W D      L  L +++    W          
Sbjct: 121 LGSSESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRLLGLGDDEI---WQSKL------ 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              W  R ++    S         +               + G +   P   +L+  ++ 
Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           H +  +             W  + E +  +        T   + L   L        D  
Sbjct: 227 HCDVFVFALNP----SGMHWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
               +  E          + L    +D++N D+   K  NI      + ++ A +   E 
Sbjct: 283 NEMEIEEETPVFEEGSRDTLLHALQTDIQNLDMPSEKAGNINTDDGSIRIVSAHSPLREL 342

Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421
             +   L   L E+        A++T +          +          +   +S     
Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477
                   L+ L + +    +   +  L++             +  L     A   V   
Sbjct: 403 RRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLV 535
            +       D        +        +P   + + ++       +    +       + 
Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTAMFGRFAAFIE 522

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           +            ++ +W       L+ +   E      +   E          +    G
Sbjct: 523 SLTDIVRIWRQPATVDEWVGRCRDLLKTLFQAEADDQKAVQNLE--NEWVKWQEESTLAG 580

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              +      I  I R +D E+        S +     +  R L F  + L GLN+G +P
Sbjct: 581 FVGQLPQQTVIRHIRRFLDSES--EAGFLRSGITFCSMVPMRSLPFKVICLLGLNDGDFP 638

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712
           +NT    F           +             E     R  L  +   R+   +     
Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696

Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
           S  L  L+           ++  + +++             +          +     + 
Sbjct: 697 SSLLGELIDTVAAMTGIGSRQLVENWIEQH-------PLQPFSHRYFQTGSRSDGIFSTR 749

Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
           ++  + +  P                   +  +      + N +   ++++++ + P   
Sbjct: 750 TDYAEALECPSGQPQPFFDNPVESCEPVAEIGQEAFVRFWRNPVKAWLQQQLSWSEP--- 806

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
             + +  +     E               +    F
Sbjct: 807 -YIDEAWEPAEPFEPQHAEQIAEIYIEARREGQDF 840


>gi|295424858|ref|ZP_06817573.1| ATP-dependent exonuclease subunit B [Lactobacillus amylolyticus DSM
           11664]
 gi|295065424|gb|EFG56317.1| ATP-dependent exonuclease subunit B [Lactobacillus amylolyticus DSM
           11664]
          Length = 1161

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 109/977 (11%), Positives = 230/977 (23%), Gaps = 151/977 (15%)

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                 +         L   + +    + L+++I   +N L  I +D      +      
Sbjct: 71  SFSRLAWYFLKDAEVGLPTQLDDAAAAMLLSKIIQDKQNDLMLIKEDKPNSGTV------ 124

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                  K L D I  +       +D      E            L+I    + E+    
Sbjct: 125 -------KQLYDTILQVHDGNLDLDDFSD---ENLNEETRKKLHDLRIIYDAFIEKTA-- 172

Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
              S        +                    +         +  +        +    
Sbjct: 173 GRFSTKNEVQLQLNQVLAKNQNLKTASFYFTDFSHFSLQEQLTIKLLFRKAKNVSLAFKT 232

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
                            N  +    Y    Q ++ KL+ FLD +R   +           
Sbjct: 233 QLG------------DINPKAEEGDYDYVIQQTIHKLVSFLDERRISYQTEAYPLQPKQS 280

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
              +++  +                           V L+ AD+   EA  +A  +   +
Sbjct: 281 GRELLNGIWTQTI---------------PANDELKQVQLVRADSRYAEAYFVARTIYQQV 325

Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              +   +   ++  + +         L +  I         +       ++ +L     
Sbjct: 326 ALNNYRYRDFLILAPNLHEYETYLTPILRQNQIPYFDDLQQEMKYHPLVVLIENLAKL-D 384

Query: 439 KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           +      I T++K  L    +   E       + LE   L    N       KS      
Sbjct: 385 ERLSTQNILTILKTRLLIPSWYQDEASYLHDVDELENFVLAHGINYDLWK--KSFSDFVK 442

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD--WT 554
           A        P    R+ +    +   +               + K  T     ++D    
Sbjct: 443 AEVIRLDKQPEEIGRIDKLRSYIIDKVTQLFTDLNAENNKEGSRKAITIFFNFLADNGAI 502

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                       D+         E+    L  L    +        +  E+  ++     
Sbjct: 503 SQLEKWRSE-ANDKGDLQQAEQPEQLWSLLMQLLRDYLLISPD-HFDQDEFFKMLISGFK 560

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                        + I      +   +  + + G   G  PK      FLS    + +  
Sbjct: 561 EANFSQIPSTLDAVNISEIGMVQNNGYKQVFIIGATSGNLPKIQKTPGFLSSENLAQMAA 620

Query: 675 KTAEKYIGQAAHDF-----------EMANGTRHLIYTRSL-RENNIPTIASRWLQRL-LV 721
              E    +   D             +A     +  +  +    N     S + +RL   
Sbjct: 621 DFDEDSYLEDRQDLNNLDQDYQFGLALALAEDRVYLSYPVLNAANEELKPSLFYERLKQD 680

Query: 722 LGGTDFFDNLKKRGQCYL-----------------------DWTRKLDYTTKQPHYKRPK 758
                   +L    Q  L                          + LD   ++   K   
Sbjct: 681 NAPEMSQHDLPDNLQELLSFITNPDASLGYLTYLKSISNSKAIEQLLDLAKQKLPQKTNA 740

Query: 759 PFPPLEAQPRT-----------------YSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                    +                   S S+++    + Y  +    L+L     F+ 
Sbjct: 741 VLKASIYDNQPVNIGEGLAQELYGQNLNASVSQLETFYENSYEYFLNYGLRLRKR--FEN 798

Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPE------INHLMKQIIDSHFEKENLPPH---- 851
           + D    G  FH     L+K+   K              +        ++E         
Sbjct: 799 ELDVIQAGNYFHETFDRLVKELNRKKLDLGNIDQSELEKLLNEARLQMQQEGQYAQLMND 858

Query: 852 -IDIIWRHLFHK----ISHSFLEHEEKIQSSIEKIFVNIPAKM--AIESIGI-------- 896
             +        +    ++ ++ +   +  + +   +  +   +   +  + +        
Sbjct: 859 PFNKYLFTCLDRTTSKVARNWRKSLIQ--TPLRAKYSELSFGLGEKVNGLSLPLSDLSGQ 916

Query: 897 ---HLTGFADRIDLLK----SGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG 947
               L G  DR+DL      +  +  I DYK+             I  Q+      L   
Sbjct: 917 HKAQLRGKMDRVDLAPVSGKNQVLAQIIDYKSSAKKFDLSLFYSGISLQMVSYLDVLSKN 976

Query: 948 S--FSQIDCRKVANLFY 962
              F+  +   +   FY
Sbjct: 977 QQFFAGEEKLSLLGAFY 993


>gi|163757508|ref|ZP_02164597.1| probable nuclease/helicase protein, ATP dependent [Hoeflea
            phototrophica DFL-43]
 gi|162285010|gb|EDQ35292.1| probable nuclease/helicase protein, ATP dependent [Hoeflea
            phototrophica DFL-43]
          Length = 1196

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 103/896 (11%), Positives = 228/896 (25%), Gaps = 90/896 (10%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               +RL  L ++          +            P     A      +A + D +    
Sbjct: 291  DPAERLDLLRQVFFTKSGPPSKLGSVASKSVAERFPDLADRAQAAQAQIAGVFDRLAR-- 348

Query: 164  KKWEDLHALKNEKYGMWWLL--AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                 L AL                F  + S+       +L A++    + +   A   +
Sbjct: 349  -----LKALDASLIAYHLARRYIGGFAAMKSRQALLDYDDLIAATASLLEKSGASAWVHY 403

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNT 273
             +      I++  +  + P    ++  ++               +    D       +  
Sbjct: 404  KLDQGIDHILVDEAQDTAPLQWSVIGKLSEEFFAGEGARQARRTLFAVGDEKQSIYSFQG 463

Query: 274  ITEKSTNIT--------SSNTTYSTHPQYS--LAKLLDFLDIKREDVKRLGNVSNEMYGR 323
               +              +      H           + L +          +       
Sbjct: 464  ARPERFAQERRSTQLKAEAAGVVFEHVPLRVSFRSSSEVLKLVDHVFASADAMRGMGDPD 523

Query: 324  SMVISKSFLP--PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
              V+ ++     P  +++      +    +     +   + EA    + A  IA  LR  
Sbjct: 524  EPVMHETARARAPGQAELWPMIAKQKSDDDDDWTAAFDDVPEAAPSAQLARRIATVLRDW 583

Query: 382  LDE---------------NKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTL 425
            +D                      L+         +   L    GI +  +  + L+  +
Sbjct: 584  IDNEMIEDQKTRKLRPITPGDVLVLVRKRDGFVPTLLRTLKAMTGIPVAGADRLRLTDHI 643

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                L +L + +    D +++A L+K PL        +   A     L            
Sbjct: 644  AVQDLMALGSFVLLDEDDLSLAALIKSPLLGLDEDALFRLAAGRPDGLSVWNHLLELAKT 703

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              L +   +R+   +   H+       +                 ++ L     +     
Sbjct: 704  EPLFASARNRLVRWRAMAHIQPPHDFYATVLGPDGGR-----QAYLSRLGHEAGDVLDEF 758

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
              L++             + + E          E G     +    +     ++A  +  
Sbjct: 759  LGLTLDHEQAGLPGLQAFLAMLESDAPEIKREMEAGSGAVRIM--TVHAAKGLEAPIVFL 816

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            +D             +      L+++     +  +  ++ +       W  +   N   +
Sbjct: 817  VD-------SGGEAFQTSHQPNLWLIPQGPHQGSDGPSVPV-------WLPDKTYNNGAT 862

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI---ASRWLQRLLVL 722
              ++     +  E+Y          A     +   R L+E   PT    AS   +R    
Sbjct: 863  NPLRELAKEQAEEEYRRLLYVGLTRAADRLVVCGYRGLKEAKSPTWHTLASAGFERAAEA 922

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------PPLEAQPRTYSFSE 774
            G     +  ++         R             P            P+ + P       
Sbjct: 923  GDYAVGEIEREADNTTFPVLRLQRAAPAPVAPGEPAADSKERTAAPAPIPSSPLPPPTRL 982

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPD----RTDRGTLFHNIITELIKKRINKNTPE 830
             + L              L     F   P       +RG++ H ++  L      +    
Sbjct: 983  PRPLAPSGVGAVLEDSANLANRSPFADKPAGSGAALERGSMIHRLLQVLPSIPPEERDAA 1042

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
            +   +++ +      E       +       + +  F   + +         V++   + 
Sbjct: 1043 LERYLERALPGADRSEAGLIAGQVRSVLDDARFAGVFAAQQGE-------AEVSVMGTLR 1095

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-QLSLEAAALK 945
            I      ++G  DRI +L    V I DYKTG  P            QL++  A L 
Sbjct: 1096 IAGEERAVSGRIDRIAVLAD-RVLIVDYKTGLAPGSGEPPPHSHVSQLAIYRALLA 1150


>gi|241206969|ref|YP_002978065.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240860859|gb|ACS58526.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1183

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 111/888 (12%), Positives = 240/888 (27%), Gaps = 83/888 (9%)

Query: 109  LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA-IWLAKNLADIIDIIETEEKKWE 167
             L         R ++ + I       P +       A +  A  LA+ I I         
Sbjct: 288  RLTGRERDDARRAEILEKIFLTVKGEPKADSQFFVKAMLAEAPQLAEAIAIARAHVAASR 347

Query: 168  DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
            D   L           A       +  + E   + +                +  +    
Sbjct: 348  DRLKLMRMYGATH--AALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWI 405

Query: 228  G--------PIIIAGSTGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIW 271
                      I++  +  + P    ++ ++A          P    +    D       +
Sbjct: 406  HYKLDRGIDHILVDEAQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSF 465

Query: 272  NTITEKSTNITSSNTTYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                 +  +  S  T                  S     D L+      K   N      
Sbjct: 466  QGARPERFSEESDRTRRRVSDSGQSFSTVRLPLSFRSTADVLEAVDHIFKAPENARGLSA 525

Query: 322  GRSMVISKSFL--PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL- 378
                V+ +S     P   D+      E  +          A  E+      A  IA ++ 
Sbjct: 526  LGEPVVHRSSRIGHPGAVDLWEMVAPEAVMKEEDWTAPFDATPESAPAAILARRIAHSIG 585

Query: 379  ------------RMSLDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTL 425
                        +    E      L+         +   L  R  I +  +  + L++ +
Sbjct: 586  SLVGRETIVDKGKERPIEAGDILVLVRKRDAFVNALTRALKRRGDIPVAGADRLVLTSHI 645

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                L +L   +    D +++A ++K PL      + +   A            K     
Sbjct: 646  AVQDLLALGRFLLLPEDDLSLAAVLKSPLFDLSEDDIFAVAALRGDNQSVWSHLK----S 701

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
                     R A ++    +   +S    +     +       Q +  L T  ++     
Sbjct: 702  FAADGTERFRAAVERLELFLRQSRSLSVHDFYARVLGSYGGRRQFLARLGTEVSDILDEF 761

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
               ++   T         +   E         +++G+    +    +     ++A  +  
Sbjct: 762  LTFTLDHETSGLPGLQSFISTLELEAPVMKREQDKGRNEVRIM--TVHASKGLEAPIVFL 819

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            +D       G +          L ++ T          + +  L   +   + A+   L+
Sbjct: 820  VD-------GGSKAFTHTHLPKLRLIETGPDEPPMPVWVPVSDLANSLTQDDAARIQMLA 872

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANG----TRHLIYTRSLRENNIPTIASRWLQRLLV 721
                  L      +   +              T H++ + +LR+++    A+ +      
Sbjct: 873  EEEYRRLLYVAMTRAADRLVVCGYRGVRVNNDTWHMMISTALRDDHPHVEATTFSGPDGE 932

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
              G  +     +R    +  + +   + +       +P PP    PR  S S    +I++
Sbjct: 933  WPGIKWRVPRVERSFERIGRSEE-RGSEETLPDGLLRPLPPQAELPRPLSPSGAGTIIDE 991

Query: 782  PYAVYARRILKLDFIPHFKKDPDRT-DRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
                 A  +L +  +    +  DR+ ++G L H ++  L +  + +     +   ++   
Sbjct: 992  D----AGGLLVVSPLFGETERSDRSLEKGRLIHRMLQALPEIPLAERPDAASRYAERAAR 1047

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHL 898
                     P      R          L+ E        +    +     + +E     +
Sbjct: 1048 -------FWPEA---ERRKLVDSVLKLLDEEGLQAVLGAQAQPEVSIMGTLTLEDRRYAV 1097

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAAL 944
            +G  DR+ +L    V I DYKT   P             QL++    L
Sbjct: 1098 SGRIDRLAVLAD-RVVILDYKTNRVPPATEEAIPFAHRAQLAIYREIL 1144


>gi|319408809|emb|CBI82466.1| DNA helicase II [Bartonella schoenbuchensis R1]
          Length = 805

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 83/704 (11%), Positives = 192/704 (27%), Gaps = 120/704 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+++   E+ G+    +P + +   +  +                  
Sbjct: 93  QILAITFTNKAAREMKTRIAELVGEAIEGMPWLGTFHSIGAKI----------------- 135

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D +  L  +  L       +  W A++LA +ID  + +   
Sbjct: 136 LRRHAELIDLKSNFTILDTDDVVRLLKQ--LIQAAGLDDKRWSARSLATMIDAWKNQGLS 193

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AE 220
            + +    +  +           +     + +RL  LNA       +  +          
Sbjct: 194 PDHISESDSYAFA------KGMGRELYHSYQDRLKSLNACDFGDLLLHSINIFQHNPDIL 247

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANH--PNGAIVLPGLDCHIPTAIWNTITEKS 278
           H        I++     +  A    +  +A         +    D       W      +
Sbjct: 248 HEYHAKFRYILVDEYQDTNTAQYLWLRLLAQQSTRQQVNLCCVGDDDQSIYGWRGAKVDN 307

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +   +             + ++R        +    +  S    +      +  
Sbjct: 308 ILRFEKDFPPA-----------KIIRLERNYRSTSHILKTASHFISHNQGRLGKTLFSDK 356

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADR 396
             N +               V +  A +  EEA +IA  +  +          A++    
Sbjct: 357 TNNEE-------------KKVKIHAAWDSEEEARAIAKEIEQAQQSGHFLNDMAILVRAS 403

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
              R  +      G+N  +  G      +      + L  + + +D +A   ++  P   
Sbjct: 404 FQMRAFEERFITLGLNYRVVGGPRFYERMEIRDALAYLRVVAQPSDDLAFERIINTPKRG 463

Query: 457 FGFPEKYLSR-AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
            G            A  +          +  +LK                          
Sbjct: 464 LGETTLRHLHNNARARAIPLFSAAIEIIETDELK-------------------------- 497

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                        +    L     + +        +  T+LT   L +           +
Sbjct: 498 ------------PKARNALRNIIEDFHRWQNLSPRTPLTELTEMILNDSG------YMEM 539

Query: 576 WFEEEGKTLSSLFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
           W E+      +    + E    ++   N   +++ ++ ++D        E    + I+  
Sbjct: 540 WQEDRSPEAPTRLENLKEMIRSMEQFENLHSFLEHVSLVMD----VEHNENMDAVNIMTL 595

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F T+ L G  EG++P   + +         +      E+    A      A  
Sbjct: 596 HSAKGLEFKTVFLPGWEEGLFPNQRSLD---------EGGRAGLEEERRLAYVGLTRAQQ 646

Query: 694 TRHLIYTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRG 735
             H+ +  + R +     ++ SR+L  L         +     G
Sbjct: 647 NLHIWFVSNRRIHGLWQSSLPSRFLDELPGEHIEVLENETSYGG 690


>gi|240126168|ref|ZP_04739054.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae SK-92-679]
 gi|268684756|ref|ZP_06151618.1| exodeoxyribonuclease V [Neisseria gonorrhoeae SK-92-679]
 gi|268625040|gb|EEZ57440.1| exodeoxyribonuclease V [Neisseria gonorrhoeae SK-92-679]
          Length = 1068

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 101/876 (11%), Positives = 219/876 (25%), Gaps = 69/876 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W             W  R ++    S         +  A
Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N  +    + ++      + ++ A +   E   +   L   L E+        A++T +
Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L  + + +    +   +  L
Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D        +        +
Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQAVERMILGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +    +       L T            ++ +W       L+ 
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +          +   E          +    G   +      I  I R +D E+      
Sbjct: 551 LFQAGPDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                E     R  L  +   R+   +     S  L  L+           ++  Q +++
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIE 724

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                        Y +           RT   + + Q    P   + + +   + +    
Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPVENAEPVAEIG 781

Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
           +D                  +  +     ++      I ++    E   P          
Sbjct: 782 QDE------------FIRFWRNPVKVWLQQLAWSEPHIGEAWEPAEPFEPQH-------A 822

Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
            +I+ +++    +      +    I A+  + S  +
Sbjct: 823 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 857


>gi|298244729|ref|ZP_06968535.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
 gi|297552210|gb|EFH86075.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
          Length = 959

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 91/902 (10%), Positives = 227/902 (25%), Gaps = 119/902 (13%)

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM--WWLLAADFLKIASKYWTERLVELN 203
              +AK L +  D +  E   +E L     +              L  A K + + L + N
Sbjct: 156  WQVAKRLGEYFDKVTEELI-FEKLKKHVTQLSRPTNERDKFLYALTYAYKNYQQLLAKTN 214

Query: 204  ASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                   Q        +          I++     +     +++ T+A       ++   
Sbjct: 215  RVDFAHLQKCAYNLLQKRPEIIQGLRYILVDEYQDTNYIQEQILLTLARATESYNLVVVG 274

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTH-PQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            D       +   T ++    ++ + +++   Q+ L           +   R     +   
Sbjct: 275  DEDQALYRFRGATVRNILEFTTRSEFASACVQHHLTTNYRSHPQIIDFYNRWMRTLD--- 331

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--- 378
             R+    +                 +    +    +DV         +EA  +A  +   
Sbjct: 332  WRNGEHDRLSRTEKIIQADPQATFSDYPSVLTLQDADV--------EQEAEQLAELIYTL 383

Query: 379  -RMSLDENKKKSALIT--ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                   +  + A +       ++        + GI +               ++ +   
Sbjct: 384  KEQGRISDYNQVAFLLYSVRSYMSETYIEAFHKQGIAVHCPRARQYFEQEEIRLIIACFA 443

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             +   +       +       +            AL  V     +    I++ +     +
Sbjct: 444  YLLDYDGMHQDTVMEYSAFPGYVRACLQQLHTHPALVQVLQLLKEEVVHIIEAREQPGKQ 503

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            +                                        +  N+      ++ S    
Sbjct: 504  LLDYFYLLLFHP-------------------------AFSGFLANETQRTNLVAFSQHLA 538

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                  ++   D             G+  +      +      +AN  E  +++      
Sbjct: 539  TFHRYYRDTSPD---------MSALGQAHARFMHTFLCLLYENEANLPENPNLLF----- 584

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN----TAKNPFLSRVMQSD 671
                     S  + ++   +++ L F  +I+G L++                     +  
Sbjct: 585  --------PSDHVQMMTIHQAKGLEFPVVIVGRLDKASSLSRDEYKNENKHLQGFYHRKP 636

Query: 672  LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
               +            +   +  +HL+   + R+ ++                       
Sbjct: 637  FEAEEKIATFDFRRLYYVAFSRAKHLLILTAKRQPHVEFAT------------------- 677

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                  +      +    +       +  P    +PR      I+     P      R  
Sbjct: 678  -----IWRTAPESVYARDRLRLMPCAEAEPHTALKPRYSFTGHIQLYATCPRRFQFFRQF 732

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIK-KRINKNTPEINHLMKQIIDSHFEKENLPP 850
                    +        G   H+ +  + +      +T   +  +  I +  F       
Sbjct: 733  NFVPRRAQEP-----ITGLAVHHTLERIHRLALEQPHTKLDDSKLISIFEYTFAFLAASS 787

Query: 851  HIDIIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909
                I      +     L +     Q+      +    ++  +     LTG  D + +  
Sbjct: 788  PA-SIEASQREQALQQVLNYVHANQQALTTIADIEARFRVERD--RYILTGQIDLL-MQG 843

Query: 910  SGFVDITDYKTGDNPKKE-TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
            S  +DI D+KT   P+++         QL L A+AL+    ++          Y   ++ 
Sbjct: 844  SQGLDIMDFKTSKRPEQDTDYLAFYRQQLYLYASALQ----ARTGQAPRRLFLYWTAEEH 899

Query: 969  FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             K   +    +        +++   + E+VT +Q  +  F              +  HL 
Sbjct: 900  KKDALM----EIPYTPTHIQEANDYVEEVVTHIQRQD--FAIQQLPHPGVCKACDVRHLC 953

Query: 1029 RV 1030
            R 
Sbjct: 954  RR 955


>gi|331002449|ref|ZP_08325967.1| hypothetical protein HMPREF0491_00829 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410265|gb|EGG89699.1| hypothetical protein HMPREF0491_00829 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 1121

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 106/979 (10%), Positives = 249/979 (25%), Gaps = 136/979 (13%)

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                 +     L       +  + + L L R+      K                    
Sbjct: 66  SFNRLAYRIFEELDIENPKLIDELDKALILRRIANKVELKAWKKQFQKA----------- 114

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVE 201
                   N+  +I      +   E +   +          +  + +    K + + +  
Sbjct: 115 ----GFIDNIKALISEFMMYDISDEFIKEQQENKDINSLLKIKLEDIYKLKKGFGDYIA- 169

Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                     + ++     +        I++ G  G  P   R++S +    +       
Sbjct: 170 -GKYFTNEQVLDILNENIINSDLLKDSIILLDGFAGFTPVQNRIISNLMKVCDEIRFCIT 228

Query: 262 L-DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
           L     P    +      T+    +       +  + +L D                   
Sbjct: 229 LGKRVNPDIGLSESDLFFTSGKMISQINEMAKKADIKRLDD------------------- 269

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
              +   +  F      +      L       +   SD+ +    N  EE   +A  +  
Sbjct: 270 INLNTGANTGFRNSKDLNFFEEHFLRYDGEKSEDV-SDIEINYCMNPLEEIDFVANKILK 328

Query: 381 SLDENK---KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
            + +     +  A+I  D   ++  +    ++  I   +   + ++       + + +  
Sbjct: 329 LVKDEGYRYRDIAIIYGDLEGVSDSLINRFSQLEIPYYLDEKMDVNNNELVEFINACIAL 388

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           I +   + A+   ++  L  F   +  L      LE       +   D   L        
Sbjct: 389 ISENFSYDAVNRYLRLGLLGFECRKVSLLDNY-LLESGIRGYKRLHSDFTYLPKSFT--- 444

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                        +   +   E   +L   + +    +              +I +  ++
Sbjct: 445 ------ESEFEEINEFKKLAMEKVSVLYTAMSKSKINIKDVCDAFRKIFTEQNIEEKLEI 498

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
             T L+ V            +E     + SLF ++         +  E ID++    +  
Sbjct: 499 VRTELEEV----KDLKRAREYEGVLDEVLSLFERLELILEGEYISKKELIDLLHTGFEEI 554

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---- 672
            +    ++   + I     +RL     L + G N+G  P        ++   +  L    
Sbjct: 555 KLGMIPDRVDRVVIGDLKRTRLSAIKALFVCGANDGKLPTVKDGGGLINDREKRKLKSIG 614

Query: 673 -NLKTAEKYIGQA-AHDFEMANGTR--HLIYT-RSLRENNIPTIASRWLQRLLVL----- 722
            NL    +                    L  +   +  +      S  +  +  +     
Sbjct: 615 FNLSDTVREDLYTGRFYLYRMLTKPSNKLFISLTGMDFDGKTNRPSILINMIKSIFPNIE 674

Query: 723 ---GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR----------------------- 756
                     +  +  +   +  R+L                                  
Sbjct: 675 IKNKEDLEIYSKFEAKEYLTENLRRLRAKENIDEKLLKYISTFFDKDFIKKITSAAMYIY 734

Query: 757 ------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                       L  +    S + ++     P+  +    L ++         +  D G+
Sbjct: 735 KDSGIGESAARELFGEELRVSVTRLENYNACPFEHFISYGLGVEER--AIHSFNAADIGS 792

Query: 811 LFHNIITE---LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL-----FHK 862
           L H+++ +     K    K        +  ++D   ++        I+           K
Sbjct: 793 LVHDMLEKCFKYAKFSKKKIAGMSEGELYALVDEAVKESMAYDKNSILEESKKSKVQLEK 852

Query: 863 ISH------SFLEHEEKIQS----SIEKIFVNIP----AKMAI-ESIGIHLTGFADRIDL 907
           I          L  + +  +      E+IF          + +  +  ++L G  DR+D+
Sbjct: 853 IVRMTKLTMLVLAKQLEAGNFIPFDFERIFGEKDNLEALNIDLKNNAKMYLRGKIDRVDI 912

Query: 908 LK--SGFVD-ITDYKTGDNPKKETAQ---KLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
            +     +  I DYKTG+   K            QL +   A+      +      A  F
Sbjct: 913 CEENDKTLVKIIDYKTGNM--KWEMDMPYYGRALQLVIYLDAVMEQLAKEGREILPAAFF 970

Query: 962 YIRLKQKFKIDCITNDKKK 980
           Y  +   F        +  
Sbjct: 971 YYHIDAPFLTRDEAKKENA 989


>gi|325130750|gb|EGC53486.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           OX99.30304]
          Length = 1069

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 103/885 (11%), Positives = 230/885 (25%), Gaps = 69/885 (7%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  AL             L P       I V ++   + L +      G  + +   
Sbjct: 10  LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             SL   +  K    L+       P +       L  L      +     +D+       
Sbjct: 62  -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191
           L    +    LA  LADI D       +W D      + +L +++    W          
Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              W  R ++    S         +               + G +   P   +L+  ++ 
Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           H +  +             W  + E +  +        T   + L   L        D  
Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
               +  E          + L    +D++N  +    + ++      + ++ A +   E 
Sbjct: 283 NEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLREL 342

Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421
             +   L   L E+        A++T +          +          +   +S     
Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477
                   L  L + +    +   +  L++             +  L     A   V   
Sbjct: 403 RRQPFFYTLECLSDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLV 535
            +       D        +        +P   + + ++       +       +    L 
Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLE 522

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           T            ++ +W       L+ +   E      +   E         +++ +  
Sbjct: 523 TLSDIVRIWQQPATVGEWVARCRDLLETLFQTEADDQKAVQNLENEWVKWQAETELAQFS 582

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
             +       I  I R +D E+          +     +  R L F  + L GLN+G +P
Sbjct: 583 GQLP--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712
           +NT    F           +             E     R  L  +   R+   +     
Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696

Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
           S  L  L+           ++  Q +++             Y +           RT   
Sbjct: 697 SSLLGELIDTVAAMAGIGSRQLAQNWIEQHPLQ---AFSRRYFQEGGRSDGIFGTRTDYA 753

Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
           + + Q    P   + + +   + +    +D    +    + N +   +++++  + P   
Sbjct: 754 TALGQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP--- 806

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
             + +  +     E               +    F +   +I++ 
Sbjct: 807 -HIGEAWEPAEPFEPQHADQIAEIYIEARREGQDFSQTAARIRAE 850


>gi|295394601|ref|ZP_06804820.1| ATP-dependent DNA helicase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972494|gb|EFG48350.1| ATP-dependent DNA helicase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 1103

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 87/866 (10%), Positives = 213/866 (24%), Gaps = 137/866 (15%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
             A  F    S  +   + + N                    +     + +     +  + 
Sbjct: 284  RAMQFSDQVSFAYQAMMADPNIVES---------------ERAKWKVVFLDEYQDTSDSQ 328

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             +++ T+     G  +    D       W   +E +      +                 
Sbjct: 329  VKMLKTLFA---GLPITAVGDPRQSIYAWRGASELNIEGFPHDFVSPGQ-----RATSFT 380

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            +     + +R+  ++N + GR    S+       +   N ++                  
Sbjct: 381  MTTSFRNSQRVLAIANAIAGRLPEDSEDTRLKPIT--TNNEVTSPLGDVEVSVTQGKTHP 438

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
               +++ E+      L   +       A++   R     V   LT  G ++ +       
Sbjct: 439  TYVSDQLES------LVEWMRGRTGHRAVLVRKRMHFAPVAQALTAAGFDVQVVGDAGGM 492

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL----------------SR 466
                 +   ++LN     +    +  L+   +   G  +                     
Sbjct: 493  GDPFVADTVAILNVATDPHAVEHLMRLLTGRVCSLGAHDLRAFNTIVKNANAEASATPLT 552

Query: 467  AKNALELVALRGN-----KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
            A   ++  A R       + +  +  L   + +         H+     R+ +   ELA 
Sbjct: 553  AVECVDSFATREYSELSLQANERLRSLAFKLREVRKNHGGAIHMIRTIMRVFDMSYELAS 612

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            L  +        + T+ +  +S          T +          D     P    E   
Sbjct: 613  LPHERAESHRANIDTFVSAVSSYVARNPTVSMTAVLAWLELANEHDAISPPPETLDESAV 672

Query: 582  KTLSSLFSKIIE---------TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
              ++   SK +E         T   +      +   +T       ++    K   L +  
Sbjct: 673  TIMTVHASKGLEFDAVALPFLTMGDLPTQPRSYQAWLTLGELPYPLRGDATKLPHLDLAQ 732

Query: 633  TLESRLLNFDTLI---LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                 +     +         +     +          ++  + L    +    A     
Sbjct: 733  EPHVSVSEMKNMFKQTQADKEDIEDFIDAGNIDEKQLPIRDQIALYHRRQERRLAYVAVT 792

Query: 690  MANGTRHLIYTRSLRENNIPTIASRWLQRL--------LVLGGTDFFDNLKKRGQCYLDW 741
             A     L  +            S +L             +   +   +  +     + W
Sbjct: 793  RAKAHLWLGASYWGHRT-TANQLSPFLLEAIGTLNVAGANIEIPESEPDKPEGLPVEVQW 851

Query: 742  TRKLDYTTKQPHYKRPK----------------------------------PFPPLEAQP 767
               +    ++   +                                       P     P
Sbjct: 852  PPVISEAEQKKQSRTRDFVRSQAPLDLDSPVSIGDEGFHRVFARVQKIMSDARPQPPRVP 911

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
            +  S +++ +   +    Y R + +       +        GT FH  +     +  +  
Sbjct: 912  QRMSTTDLVKYRAN-ADAYMREVQRPMPQQPSEY----AALGTAFHAWVERHFGQ--SAL 964

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
            T      M++ + +H  K              F  +  +F   E    ++     V +P 
Sbjct: 965  TDIHEAQMRKALPAHVRK-------------RFDSLVATF---ERSAYANRVPHAVELPF 1008

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            ++ +    +   G  D +       V + D+KTG  P        +  QL++   A++  
Sbjct: 1009 ELELGGRKVP--GKIDAVFKDGD-RVTVVDWKTGRKPS-ADILDTMATQLAIYVHAVQK- 1063

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDC 973
               +    +V    +  +        
Sbjct: 1064 -LPEYADCEV-GAEFYFVGSDETFTP 1087


>gi|240123968|ref|ZP_04736924.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae PID332]
 gi|268682596|ref|ZP_06149458.1| exodeoxyribonuclease V [Neisseria gonorrhoeae PID332]
 gi|268622880|gb|EEZ55280.1| exodeoxyribonuclease V [Neisseria gonorrhoeae PID332]
          Length = 1069

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 99/874 (11%), Positives = 210/874 (24%), Gaps = 78/874 (8%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W                R ++    S         +  A
Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKLW-----------RYLDDGRQSAPHRVALWEKLLA 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N  +    + ++      + ++ A +   E   +   L   L E+        A++T +
Sbjct: 311 QNLKMPSENVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L  + + +    +   +  L
Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D                 +
Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGAMRGGTDQLFTWKQAADRMVLGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +       +    L T            ++ +W          
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLPDR 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +          +   E         +++ +    +       I  I R +D E+      
Sbjct: 551 LFEAGADDQKAVQNLENEWVKWQAETELAQFSGQLP--PHTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-- 738
                E     R  L  +   R+   +     S  L  L+           ++  Q +  
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIE 724

Query: 739 -------------------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
                                     D+   L  T + P     +P              
Sbjct: 725 QHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPV-ENAEPVAEIGQD 783

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
           E  +   +P  V+ ++ L      H  +  +  +     H            +   + + 
Sbjct: 784 EFIRFWRNPVKVWLQQQLAWSEP-HIGEAWEPAEPFDPQHAEQIAETYIGARREGQDFSQ 842

Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
              +I             +  +W+  F   +   
Sbjct: 843 TAARIAAESL---LPSGELGRLWQQDFQTAAKQI 873


>gi|49474856|ref|YP_032897.1| ATP-dependent nuclease subunit A [Bartonella henselae str. Houston-1]
 gi|49237661|emb|CAF26843.1| ATP-dependent nuclease subunit A [Bartonella henselae str. Houston-1]
          Length = 1160

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 86/830 (10%), Positives = 209/830 (25%), Gaps = 110/830 (13%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAG 234
             A        K +                   +                      I++  
Sbjct: 340  AAFQLCARYLKIYANLKKANGFLDFNDLIERTLHLLKRQGASQWVHYKLDNGLDHILLDE 399

Query: 235  STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
            +  + P   +++  +A           N   +    D       +     ++        
Sbjct: 400  AQDTNPEQWQIIQLLAQEFFTGHSQRTNIRTLFAVGDEKQSIYSFQGAAPENFAENGRMI 459

Query: 287  TYSTH----------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
                             YS     D L       ++  N        +  + ++      
Sbjct: 460  QKKVQQVNQKFEKIQLNYSFRSTPDVLKSVDLVFEKPENYKGLSAENTKTVHEAIRAHSP 519

Query: 337  SDMRNTDILENKIPNIQKCF----SDVALIEADNEREEAISIAIALR--MSLDENKKKS- 389
             ++   D +  +       +      +   E     + A +IA  L     L    +   
Sbjct: 520  GEVILWDAISKEKSEFPDAWHLSVDHLDTPETRLAEKIAETIANWLHNGEMLPAKGRLMR 579

Query: 390  -----ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                  L+    +    +   L    I I  +  + L+  +    L +L   + +  D +
Sbjct: 580  ASDIMVLVRKRDHFVSALSRALKLRNIPIAGADRLQLTKHMSVRDLMALARFVLQPKDDL 639

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRI--ATQK 500
            ++A ++K PL      E Y   A    +L         +       +    +     T  
Sbjct: 640  SLACVLKSPLFSLSEEELYQLAAHRTGSLWQSLCMHASHVSSHASFRDAFENLNHYRTLV 699

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
            +   V  + S +   DK    +L     +    L  +     +                 
Sbjct: 700  DKIPVFEFYSYILNNDKGRQKILARLGSEANDVLDAFMDYTLTLQKTG-----LPGLQAF 754

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
            L+ +  ++          E  +    +    +     ++A+ +  +D             
Sbjct: 755  LETLSANDPEI-----KREFDQNHEEVRIMTVHAAKGLEASVVFLVD------------- 796

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
                     I  +  +  L          ++           F +++ Q  L+       
Sbjct: 797  -----PGSAIWHSQHAPHLLKTPSSHPQWSDQQAFIWRPNEKFDTKLSQQALSYLKERAE 851

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                   +         ++      +   T    WLQ +        F  +    +    
Sbjct: 852  EEYRRLLYVGMTRAEDRLFVC--GYSGEKTSPHTWLQLVKNALKPHAFV-IDGPAEDIAA 908

Query: 741  WTRKLDYTTKQP-----------------------HYKRPKPFPPLEAQPRTYSFSEIKQ 777
            W   +  ++  P                         + P    PL     + S     +
Sbjct: 909  WRYCITASSYAPIKQEVPCAEYQTLPSLPTFFSHKVPEEPALPKPLRPSVASLSIEADTE 968

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            + ++   +    +L               + G + H ++  L      K      + +  
Sbjct: 969  ISSNLKYLSLSPVLG----ETNINRAFSIEYGNIVHRLLQHLPNCPAQKRRDYAQYYLNT 1024

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
               SH+++      +  +W+     I        + + S   +  V++   + I      
Sbjct: 1025 KA-SHWQETQKEKALCHVWQ-----ILDH--SSLKPLFSDHSRAEVSLMGIVKIRGKEQA 1076

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKA 946
            ++G  DR+ + ++  +   D+KTG  P  +         Q++L    L+A
Sbjct: 1077 ISGQIDRLYITEN-SIIFADFKTGAPPEDEAAIAPHYLLQMALYRKLLQA 1125


>gi|148272377|ref|YP_001221938.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
 gi|147830307|emb|CAN01241.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
          Length = 1091

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 87/837 (10%), Positives = 193/837 (23%), Gaps = 124/837 (14%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPAT 242
            L   +  + E                 +             +     +++     +    
Sbjct: 240  LVDLAVRFQEEKTRRGLVEYSDQVAFALAICERVPQVVAEHRKRFRVVLLDEYQDTSVVQ 299

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             RL+ST+     G  V+   D H     W   +  +     ++   +             
Sbjct: 300  TRLLSTLFG---GTPVMAVGDPHQSIYGWRGASAANLARFGADFAPTG------------ 344

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                      +  +S      + V+  +    +     +   +    P        + + 
Sbjct: 345  ---AASADVPVYALSTSWRNPASVLGAANRIVEPLTAASRIPVARLEPRPDAGDGRLDVA 401

Query: 363  EADNEREEAISIAIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISA 417
              +   +EA S+A      L +       + +A++             L   G+   +  
Sbjct: 402  YEETVADEAASVAAWFADRLRQTGSDGRPRSAAMLCRSLKTIEPFTTALADRGVPFRVLG 461

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
               L        L  +L  +        +  L+     + G  + +      +   +  R
Sbjct: 462  LGGLLDQPAVVDLVCVLRVLHDPTAGSELVRLLAGARWRIGTKDVHALSRVAS--WLMSR 519

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
             +       +++  +  R +   +             + ++    L       +  L   
Sbjct: 520  DHAQKPLAEEVRDGL--RASVVPDEVGSVVDALDFVVDARDGHTALAGFSADGLARLRAA 577

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                      + +     +TV   + +   E                 +        G  
Sbjct: 578  GRQLQVLRSRVGLDLVDLVTVVQQELLLDIEVAANETDPLGRASLEAFTEQVARYLQGDS 637

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSST-LFILGTLESRLLNFDTLILGGLNEGVWPK 656
                      +              E     + IL    S+ L +D + +  + EG  P 
Sbjct: 638  AGTLGPFLAWLAEAERRDNLAPRTEEPEPGTVQILTIHGSKGLEWDVVAVPRMVEGELPG 697

Query: 657  NTAKNPFL------------------------------SRVMQSDLNLKTAEKYIGQAAH 686
               +                                            +  E+   +   
Sbjct: 698  TLREKRGWVAFGALPFEFRGDSAELPSLAWRGAETQKEFAEAMEAFGEELEERNAAEQRR 757

Query: 687  DFEMANGTRHLIYTRS---LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
               +A          S         P     +L+ +  +G        +           
Sbjct: 758  LAYVAITRTRSDLLLSGSFWSTQQKPRGPGAFLREIQQVGLIAPDALPEAPELEENPLEP 817

Query: 744  KLDYTTKQPHYKRP-------------------------------------KPFPPLEAQ 766
                         P                                          L   
Sbjct: 818  GSARVAWPLPPLGPREARVRAASDAVADADPGAETVWTRDIDLLLAERDARARDAELVDL 877

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
            P     S  K  ++DP  V AR    +   P+ +        GTLFH  +          
Sbjct: 878  PTRIPASRFKDFVSDPAGVAARLRRPMPERPYRQTRL-----GTLFHGWVEARYGPAGTA 932

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
            +          +ID+   + +  P    + +    ++  +F   E   +   +   V + 
Sbjct: 933  D----------VIDASGVELDADPTEPPVEQEDLDRLRATFEASEWASR---KPEEVEVE 979

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
              M +      +    D + L+  G   + D+KTG  PK     +L   QL+L   A
Sbjct: 980  IHMELAGQ--VVICKIDAVFLI-DGRYRVVDWKTGRTPKDAADLELKQLQLALYRLA 1033


>gi|237786047|ref|YP_002906752.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758959|gb|ACR18209.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 1175

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 103/848 (12%), Positives = 230/848 (27%), Gaps = 70/848 (8%)

Query: 27  NGTLVENFRYDPLNPLLLASVTIYVPTKRAI----QELRSEFIEITGKKSTILPII---- 78
           +  L +  R + ++     S+     +K A     + L S   +       I  +     
Sbjct: 56  SSFLRDVARAEIMSGTNPDSILFLTASKEAAVQTNRWLLSAIEQGFDNDIAIERVFSGSI 115

Query: 79  -KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            +S+              +     P     RLL  A    + R+ L +  +      P  
Sbjct: 116 ARSVHSFAFAVLRHQAAHTPGALAP-----RLLTGAEHDSLVRDMLREHSERGADIWPER 170

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
              S    +  A+ L D +  +       E+L           W  AADF        T 
Sbjct: 171 -LRSALTTLGFARQLRDFLLRVAERGCTSEELRQYGQGCSRDEWSAAADFYDEYRA--TA 227

Query: 198 RLVELNASSPVGYQIALMRAE---AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           RL+  NA +      A + A     E         I+I  S    P ++ L+    +   
Sbjct: 228 RLMGSNALNASELVRAAVDALDSDEELAESLNFDVILIDDSQFFDPLSSELVERFRSRAR 287

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             +V          +++      +T       T +T       +L               
Sbjct: 288 LTLVA----SEQSESVFRFRGGSTTYADKLAKTENTIHLSGTKRL--------------- 328

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDM----RNTDILENKIPNIQKCFSDVALIEADNEREE 370
             +  +   +  ++ +   P++       R+ D       + +   +DV ++ + +   E
Sbjct: 329 --APPVAELAARVADATRHPESLRWAKEIRHQDAERLSDHSAEFGEADVRVLVSPS--AE 384

Query: 371 AISIAIALRMSL---DENKKKSALITADRNLARRVKLELTRFGINI-DISAGIPLSTTLH 426
             ++   +R +    +   K  A+I   ++ A  ++  L   G+ + D    I L     
Sbjct: 385 VAAVVDRVRRAHIVDNVQWKDIAVIVRSKSQAAPMRRGLLAAGVPVADDPTEIVLLEQPM 444

Query: 427 SSILTSLLN-AIFKLNDFMAIATLVKHPLAKFGFPEKY--LSRAKNALELVALRGNKNSY 483
              +   +  A+ +      +  LV  P+           L   +     V       + 
Sbjct: 445 VRAILQAVRCAVGEDLTNDELERLVLSPIGGGDPITFRCILRGLRRGFMKVEFDNPVRAA 504

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
           ++  + +   +                 L  E  +L   L       I  + +       
Sbjct: 505 ELTAITTTDDEDYGRSVFRAIDALRFILLGGELIDLTENLTAREKDLIMRVRSVIQAGQE 564

Query: 544 T--------CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                        ++ D   L+                     +   +L       +E  
Sbjct: 565 AFYGGESVEAILWAVWDAAGLSEALANQSLRGGAVGSMADQHLDAVMSLFDAAGDYVERH 624

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                       I+ + +       +      + +     +    +DT+++ GL E VWP
Sbjct: 625 PHSTIT-SFVRFIVEQELPTGARDRRGPVREAVDVSPAHATVGKEWDTVVVAGLQEDVWP 683

Query: 656 KNTAKNPFLSRVMQSDLNLKTAE--KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
             +       +    D   +  E  +   +     +     R L      R      + +
Sbjct: 684 SLSETGTIFRQEEFVDFLDRGVEPGRPENRRGRYDDRLAEERRLFLVAVTRARRSLLVTA 743

Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
                +   G  D   +++ R    L   + L  +  +P  +               S +
Sbjct: 744 VG-PHVSDDGTVDSDADIRSRFLEELAGDQALASSHGEPDAESSDSADLRALTSSGGSQT 802

Query: 774 E--IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
           +  +  L    +         +  +    +  D +  G   H+   +L +  +       
Sbjct: 803 QSPLSVLPECEFPRVLSPDSLIAELRRVVESEDSS--GHERHHAARQLARLALAAGDAPS 860

Query: 832 NHLMKQII 839
              +    
Sbjct: 861 RESVITAA 868


>gi|115522488|ref|YP_779399.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
 gi|115516435|gb|ABJ04419.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
            palustris BisA53]
          Length = 1165

 Score =  121 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 98/861 (11%), Positives = 210/861 (24%), Gaps = 80/861 (9%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE--KKWEDLHAL 172
            L  +   +   I   L     ++        + +A ++AD I   + E     ++DL   
Sbjct: 319  LCAVLAREAERIGALLQRRRAVAARDRTQALLLIATSVADAIRREKQERGLLDYDDLID- 377

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232
                           L   S  W    ++                  +      +     
Sbjct: 378  ----------KTLAMLDRISAGWVHYKLDRGVDH--VLIDEAQDTSPKQWDIVERLIAEF 425

Query: 233  AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
                G+     R +  V +         G           T+  +      S    S + 
Sbjct: 426  TAGEGARENIKRTIFAVGDEKQSIFSFQGAVPREFAERRETLRSRFQKADLSFEKVSFNY 485

Query: 293  QYSLAK--LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
             +      L     + R++       ++  Y     ++ +                  + 
Sbjct: 486  SFRSGAAILQSVDHVFRDEDIYRSIHADTTYPVHQSLTDAGPSLIDLWELQQPDERQDLE 545

Query: 351  NIQKCFSDVALIEAD---NEREEAISIAIA---------LRMSLDENKKKSALITADRNL 398
              Q  F  V+    +    +R +A   A+                       L+    + 
Sbjct: 546  GWQAPFDAVSATSPEVKLAQRVQAEIAALISGGTLTGPVGSRRRLRYGDVLILVRRRGSA 605

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
               V   L R  I +  +  + L+  +    L +L +A+    D +A+A  +K PL    
Sbjct: 606  FDAVIQALKRGNIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLD 665

Query: 459  FPEKYLSRAKNA-LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
              + +    +       AL     + D   +    L+  A    +     + + L   D+
Sbjct: 666  DDDLFKLAWERQGSLRQALADQAATNDKFGIAQQRLNDCAKLALSQSPFSFYAWLLGGDR 725

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
              A +L     +    L  +     +                           +    W 
Sbjct: 726  GRARMLRRLGHEATDALDEFLELALAYERKAPA------------------TLQGFVAWL 767

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                  +        +    +  +  + ++     +   T  P   +   L  L    + 
Sbjct: 768  RAADTEIKRDMEIARDEVRVMTVHGAKGLEAPVVFLIDTTSSPADTQRLNLIRLPQGNAG 827

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
                  ++  G                  V  +   +    +   +      M      L
Sbjct: 828  PGTPSVMVWAGKKADDP----------PAVANARAAMIGDTEDEYRRLLYVAMTRAADRL 877

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---------YLDWTRKLDYT 748
            I       N      + W   +            +  G              W       
Sbjct: 878  IVGGCQPGNRNEVREASWYDLICKGLERSGLPMQEIAGPDGAVKRFCRAEDAWPETAIAA 937

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
            T        +    L       + +E     +      AR   + +     ++      R
Sbjct: 938  TAALPEPIAELPFWLSLPAPPLTPTERTLQPSSAEIDAARTARRGEPTDARER---ARQR 994

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            G L H ++  L +    +        + +  D     E     +      L       F 
Sbjct: 995  GVLVHRLLQSLPEIAPTRRRDAAAGFLGRNTDPKIWPEADRTALADRVLALIAD--PRF- 1051

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIESI-GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
                 + +   +  V I  ++         ++G  DR+ ++    V I D+KT   P   
Sbjct: 1052 ---ASVFAEGSRAEVPIIGRLRQPGGVPFLVSGQIDRL-VVSDEAVLIVDFKTNQTPPGN 1107

Query: 928  TAQKL--IDPQLSLEAAALKA 946
             ++       QL+L  A L  
Sbjct: 1108 ESEVPVTYLRQLALYRAVLAR 1128


>gi|86355694|ref|YP_467586.1| nuclease/helicase protein, ATP dependent [Rhizobium etli CFN 42]
 gi|45505284|gb|AAS67014.1| AddA [Rhizobium etli]
 gi|86279796|gb|ABC88859.1| probable nuclease/helicase protein, ATP dependent [Rhizobium etli CFN
            42]
          Length = 1183

 Score =  121 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 89/817 (10%), Positives = 208/817 (25%), Gaps = 84/817 (10%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIA 233
              A       +  + E   + +                +  +              I++ 
Sbjct: 360  QAALVLAGRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGIDHILVD 419

Query: 234  GSTGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
             +  + P    ++ ++A          P    +    D       +     +  +  S  
Sbjct: 420  EAQDTSPIQWSVIQSLAEDFFSGESARPGVRTLFAVGDEKQSIYSFQGARPERFSEESDR 479

Query: 286  TTYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL--P 333
            T                  S     D L+   E  +   N          V+ +S     
Sbjct: 480  TRRRVSDSGLSFSSVRLPLSFRSTADVLEAVDEIFRTSDNARGLSAVGEPVVHRSSRIGH 539

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------------RM 380
            P   D+      E  +          A  E+      A  IA ++             + 
Sbjct: 540  PGAVDLWEVVAPEAVVKEEDWTAPFDATPESAPAAILARRIAHSIGTLVGRETIVDKGKE 599

Query: 381  SLDENKKKSALITADRNLARRVKLELTRFGI-NIDISAGIPLSTTLHSSILTSLLNAIFK 439
             L E      L+         +   L R G   +  +  + L++ +    L +L   +  
Sbjct: 600  RLIEAGDILVLVRKRDAFVNALTRALKRRGDIPVAGADRLTLTSHIAVQDLLALGRFLLL 659

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
              D +++A ++K PL      + +                K              R A +
Sbjct: 660  PEDDLSLAAVLKSPLFDLSEDDIFAIAGLRDDNESVWSHLKRF----AADGTERFRAAVE 715

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
            +    +   +     +     +       Q +  L T  ++        ++   +     
Sbjct: 716  RLELFLRQSRHLSVHDFYARVLGSHGGRRQFLARLGTEVSDILDEFLTFTLDHESSGLPG 775

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                +   E         +++G+    +    +     ++A  +  +D       G +  
Sbjct: 776  LQSFISTLELEAPEVKREQDKGRNEVRIM--TVHASKGLEAPIVFLVD-------GGSKP 826

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                    L ++ T          + +  L   +   + A+   L+      L      +
Sbjct: 827  FTHTHLPKLRLIETDADEPPLPAWVPVSDLANSLTQNDAARIQMLAEEEYRRLLYVAMTR 886

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
               +            +   T  +  +   +     ++     G    +  ++ R     
Sbjct: 887  AADRLVVCGYRGVRVNND--TWHMMISTALSEGHPHVEAATFSGPDGEWPGIRWRVPRVE 944

Query: 740  DWTRKLDYTT-----KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA--VYARRILK 792
                ++D +      +       +P PP    PR  S S    ++++       A  +  
Sbjct: 945  RRFERIDRSEAHDSQEALPEGLSRPLPPQAELPRPLSPSGAGTIVDEDEGSLFVASPLFG 1004

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                          ++G L H ++  L      +     +   ++          L P  
Sbjct: 1005 EKERSDHS-----LEKGRLIHRMLQALPDIPPVERPDAASRYAERAAR-------LWPEA 1052

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKS 910
                R          ++ E        +    +     + +E     ++G  DR+ +L  
Sbjct: 1053 ---ERRRLVDSVVKLMDEEGLQPVLGAEARPEVSIMGTLTLEDRRYAVSGRIDRLAVLAD 1109

Query: 911  GFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945
              + I DYKT   P             QL++    L 
Sbjct: 1110 -RIVILDYKTNRVPPSTEEAIPFAHKAQLAIYREILA 1145


>gi|172040184|ref|YP_001799898.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
 gi|171851488|emb|CAQ04464.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
          Length = 1219

 Score =  121 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 81/699 (11%), Positives = 185/699 (26%), Gaps = 67/699 (9%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTI-----LPIIKSLGDVVE---------EKFTA 91
            V     T++A  EL           +       LP      + +          + +  
Sbjct: 100 HVLGLTFTRKAANELGQRIRGRLETLARSGFREQLPADDPRHEALRNISPAVSTYDSYAG 159

Query: 92  DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK------------DLYPESPLSLP 139
           +++  Y L  PV    R++  A   +I R  L D  +            D        + 
Sbjct: 160 NIVGEYGLLAPVEPSGRIISDAEKWMITRQLLLDHDREMQTSRSMVTVIDFIHRLSDEMD 219

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
              A    +      +ID I+  E       +    K         D L    KYW ERL
Sbjct: 220 NHLAELKDVRGETEALIDTIQQVEHGVGKPLSKAAYKLRDANQERLDLLPWVKKYW-ERL 278

Query: 200 VELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            EL+  +         +  +EH       +     +++     +  A   L+ ++     
Sbjct: 279 QELDVRTFGQQMTLAAKLASEHAIVGQSQRERFRVVMLDEYQDTSHAQRVLLRSLFGDGQ 338

Query: 255 G--AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                V    D       +   T  +     ++  +   P         + +        
Sbjct: 339 DDELAVTAVGDPMQAIYGFRGATSSNLGNFETDFPFRGEPAQKFELTTSWRNPASVLELA 398

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI-EADNEREEA 371
               S  +     V                   + +   ++     +    E+  +R+EA
Sbjct: 399 NVVSSRTLGENRTVSELKPRAGAEDGEIQVAFFDEEDQELEWLTDQLQQRWESFKKRKEA 458

Query: 372 ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            +++         +   +A++      A  +   L   G+ ++++ G  L      + + 
Sbjct: 459 AAVSGE-----KVDPFSAAVLVRKNKEALPIFELLRAKGVPVELTGGAGLLDIPEVADVY 513

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG------------- 478
           + L A+    D  A+  L+  P    G  +  +   +        +G             
Sbjct: 514 ATLRALVDPEDDPAMLRLLTGPRFNLGARDLQILARRAQQLQRRAKGDTDPGEVNQDTTS 573

Query: 479 -----NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD------HI 527
                        +    +   +  Q          + +   D        +        
Sbjct: 574 AGGEDPWIHNPAYEELKSLESPLREQLLEAIPNPADATVGLADAIADFADAEEQGMSPRG 633

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDW---TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
            + I  L     +    C    + D     +  +     V    HR   +          
Sbjct: 634 ARAIAELSRELGHLRRNCLTKPLPDLIADIEDMIGIRTEVLTRWHRNPDDSIGTSHLDEF 693

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
           + +     + G    +  ++++        G        K+ T+ IL    S+ L +D +
Sbjct: 694 ADIVQSFSQLGGSNASILVDYLRAAHEHDSGLEPGEVEAKTDTVQILTVHRSKGLEWDIV 753

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
            +   +   +         L   +     + ++ +   +
Sbjct: 754 AVPYAHRKNFFDAETPGVRLEEWLHKAERIPSSLRGDAE 792



 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 91/801 (11%), Positives = 205/801 (25%), Gaps = 85/801 (10%)

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
             ++   +               + W        A++  G ++    A           PI
Sbjct: 425  EIQVAFFDEEDQELEWLTDQLQQRWESFKKRKEAAAVSGEKVDPFSAAVLVRKNKEALPI 484

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGL----DCHIPTAIWNTITEKSTNITSSNT 286
                    +P      + + + P  A V   L    D     A+   +T    N+ + + 
Sbjct: 485  FELLRAKGVPVELTGGAGLLDIPEVADVYATLRALVDPEDDPAMLRLLTGPRFNLGARDL 544

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                       +L        +  +   + ++       + + ++    + +    + L 
Sbjct: 545  QI---LARRAQQLQRRAKGDTDPGEVNQDTTSAGGEDPWIHNPAYEELKSLESPLREQLL 601

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA-------------LIT 393
              IPN       +A   AD    E   ++     ++ E  ++               LI 
Sbjct: 602  EAIPNPADATVGLADAIADFADAEEQGMSPRGARAIAELSRELGHLRRNCLTKPLPDLIA 661

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
               ++       LTR+  N D S G                       D  A        
Sbjct: 662  DIEDMIGIRTEVLTRWHRNPDDSIGT-------------------SHLDEFADIVQSFSQ 702

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L                     L   +       ++ L + R    + +     +  R +
Sbjct: 703  LGGSNASILVDYLRAAHEHDSGLEPGEVEAKTDTVQILTVHRSKGLEWDIVAVPYAHRKN 762

Query: 514  EEDKELAV-LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
              D E     L + + +      + + +  +         +         ++        
Sbjct: 763  FFDAETPGVRLEEWLHKAERIPSSLRGDAENEGQPGGYPLYDASHAEKSADLTKAADAFE 822

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
              L  +E  ++    +  I  T   +  +   +   +T +     +     +      + 
Sbjct: 823  VQLQAKEAQESERLFYVGITRTERVLLVSGSAYSSGVTAVDPSLNLVLLRNR------IT 876

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
               + L          L       + A+    +          T E+ I  A  D+ +  
Sbjct: 877  DSRAPLAGASVHTWSDLGRKPSKSDAARVEKGNATEIDHYFYPTPEQLI--AREDYALER 934

Query: 693  GTRHLIYTRSLRENNIPTIASRWLQR-----LLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                    ++      P  +           +  +G     D+  +        TR+ D 
Sbjct: 935  RRAEADGEQASWPQPAPLASRPGAADGAGMVIDAIGAATTGDSATESAASQDMLTRQWDE 994

Query: 748  TTK--QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
             T+     +++              + ++   +  DP    ARR  +   +         
Sbjct: 995  ETRLLIQEHQQRTLTAVEVPLDPMLTATQAVAMNQDPEQF-ARRRRRPIPMQPQPY---- 1049

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RGT FHN + +   + +  +  E+       +                      ++ +
Sbjct: 1050 AKRGTAFHNWVEQHYNQAMLFDEDEMPGASDATLQD----------------PQLEELKN 1093

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID---LLKSGFVDITDYKTGD 922
             FL  E   +       V       +   G    G  D +       +    + D+KTG 
Sbjct: 1094 KFLGSEWAQR---TPESVE--GSYLVNIGGFVFNGRMDAVFHEGEDPAAGWLVVDWKTGQ 1148

Query: 923  NPKKETAQKLIDPQLSLEAAA 943
             P     +   + QL+    A
Sbjct: 1149 MPTGRDMKNA-ELQLAAYRLA 1168


>gi|90021650|ref|YP_527477.1| DNA helicase/exodeoxyribonuclease V subunit A [Saccharophagus
            degradans 2-40]
 gi|89951250|gb|ABD81265.1| DNA helicase/exodeoxyribonuclease V, subunit A [Saccharophagus
            degradans 2-40]
          Length = 1155

 Score =  121 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 89/834 (10%), Positives = 207/834 (24%), Gaps = 104/834 (12%)

Query: 181  WL---LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG---------TKG 228
            W         L + + +      E + +      ++ +RA                    
Sbjct: 371  WQTLDALIQLLPLCTAHLKLVFKESSQTDFTEITLSALRALGSESDTPTDLSLILDYRLN 430

Query: 229  PIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
             ++I     +      L+  +        G  +    D       +         +   +
Sbjct: 431  HVLIDEFQDTSSIQLNLLKLLTQEWQPDEGRTLFIVGDGMQSCYGFRNAN-VGIFLNIRD 489

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                  P  ++   ++F   +                ++ +   +             + 
Sbjct: 490  NGLENVPMSAVNLCVNFRSNQAVVNWVNDVFKVAFPAQNDINRGAV-------SYQPSVP 542

Query: 346  ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-KKSALITADRNLARRVKL 404
             +    +         +  +    EA  +   +   L+ N  +  A++  +R    ++  
Sbjct: 543  FDTKELLSSHVECHGFVGDNGNEAEAQFVTSIIAQQLEVNPNQSIAILVRNRPHLTKIIT 602

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L    I        PL        L ++   +   +D++A    ++ P       E  +
Sbjct: 603  ALRSQNIAYQAVDIDPLLARPCVQDLLTITRVMQDQSDYLAWLAFLRAPWCGLSLSELTV 662

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                          +  +       ++          +      ++R+      LA    
Sbjct: 663  LLG----------DHIYADTQPATHNVFATLHNEDLLSLLNTDTKNRVQRARMLLAQSFH 712

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
                + +  LV               S+      T LQ +   E       W        
Sbjct: 713  QTQRKPLAALVESLWFALGGALIADNSNELDDARTYLQLLTKHEKGGRIRQW-------- 764

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS--STLFILGTLESRLLNFD 642
                                  D     +     +P    +    + ++   +S+ L FD
Sbjct: 765  ----------------------DAFYAGLQKLYARPTPVDANVQPVQLMTMHKSKGLEFD 802

Query: 643  TLILGGLNEGVWPKNTAKNPFLSR--VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
            T+ + GL+      ++    +  R         L +      ++  D   A        +
Sbjct: 803  TVFVCGLSRPSKADDSPLLFWHERLNSYSEPQTLLSPLSPKIESEADPVYAFLKEEGKQS 862

Query: 701  RSLRENNIPTIAS-RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
            R L +  +  +A  R   RL +          + +         ++    ++       P
Sbjct: 863  RLLEDTRLLYVACTRAKARLYITAALTETPAAEIKPPANNTMLARIWDAIQEQIITHVDP 922

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI-------------------PHFK 800
               + +     + S   + +  P A+     L    +                      +
Sbjct: 923  NVDMPSNDSVETGSNYVRFLT-PEAISGLHGLVDSALVTETEKQKTVFDNSDINIFEDRE 981

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
             D      GTL H I+  +    ++    E    M +   +      +P           
Sbjct: 982  VDNTAAAIGTLMHRILAVICDDGLDAWPLEKLAGMHKPWRAQLTANGVPAATAEQALQTI 1041

Query: 861  HKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
             +     L+ E       +S              +          DR  + +     I D
Sbjct: 1042 TQSVLKMLDDETARWLLSNSHPVSHCEWVVHYGSQPRD----AVIDRFFI-EGNTAWIVD 1096

Query: 918  YKTGDNPKKETAQKL-------IDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
            YKT    K ET ++          PQ+      +K     +I  +K     +I+
Sbjct: 1097 YKTSTPNKGETLEQFVSAQQAEYQPQVDFYQKLVKEIVPPEITIKKALYFPFIQ 1150


>gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB [Clostridium
            acetobutylicum ATCC 824]
 gi|81529945|sp|Q97GV2|ADDB_CLOAB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|15025266|gb|AAK80220.1|AE007727_4 ATP-dependent exonuclease synthesis protein AddB (superfamily I
            helicase) [Clostridium acetobutylicum ATCC 824]
 gi|325509679|gb|ADZ21315.1| ATP-dependent exonuclease synthesis protein AddB (superfamily I
            helicase) [Clostridium acetobutylicum EA 2018]
          Length = 1153

 Score =  121 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 89/255 (34%), Gaps = 35/255 (13%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S +++ I  P++ Y +  L +     F       D G+  H +I    +    +N 
Sbjct: 774  KMSVSRLEKYIECPFSYYVQYGLNIKDRKIF--SLTPPDLGSFMHKVIDRFCETIKEENI 831

Query: 829  PE-------INHLMKQIIDSHFEKENLP----PHIDIIWRHLFHKISHSFLE--HEEKIQ 875
                         + +I+D   E                     +I    +    E+  +
Sbjct: 832  DWNEVNDHICEEKIYKIVDQEIEGRGGSILNSSPRYSYIALRLKRILKRTVRIVAEQFKR 891

Query: 876  SSIEKIFVNIPAK-------MAI---ESIGIHLTGFADRIDLLK-SGF--VDITDYKTG- 921
             S + +   +  +       + +   +   + LTG  DRID+++  G   + I DYK+G 
Sbjct: 892  GSFKPVGYEVSFENGGSYPPITVGLNDGSEVVLTGRIDRIDMMEKDGSTYIRIVDYKSGN 951

Query: 922  DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               K        D QL L   A L+  +  + D      + Y  +      D I   K  
Sbjct: 952  KIFKLSDVYYGFDIQLLLYLNAILENENLDEEDKVLPGAILYFTMD-----DPIIKGKNN 1006

Query: 981  YSADELSEKSLKNLI 995
             + +++ E+ +K+L 
Sbjct: 1007 LTDEQIREEIMKSLK 1021


>gi|39933154|ref|NP_945430.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009]
 gi|39652779|emb|CAE25518.1| Possible exonuclease V and helicase activity based on COG assignment
            [Rhodopseudomonas palustris CGA009]
          Length = 1161

 Score =  121 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 99/856 (11%), Positives = 214/856 (25%), Gaps = 76/856 (8%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE--KKWEDLHAL 172
            L    + +   +   L     L+L       + +A  +A  I   + E     ++DL   
Sbjct: 317  LAERLQREGARLAGLLERRRALALRERTRALLVIAAQVAGNIAREKRERGLLDYDDLID- 375

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232
                           L   +  W    ++                  +      +     
Sbjct: 376  ----------KTLAMLDSGAAGWVHFKLDRGVDH--VLIDEAQDTSPKQWKIVARLIDEF 423

Query: 233  AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
                G+     R +  V +         G          N +  +           + + 
Sbjct: 424  TAGEGARDGVRRTIFAVGDEKQSIFSFQGAVPKEFAEQRNELQRRFHGADKRFEKVAFNY 483

Query: 293  QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
             +     +            +    +      +  S +   P + D+   ++ +++    
Sbjct: 484  SFRSGAAILQSVDHVFRDPAIYRSIHADSTYPLHQSLADAGPSSIDLWPLEVPDDRQQIE 543

Query: 353  QKCFSDVALIEADNEREEAISIAIAL--------------RMSLDENKKKSALITADRNL 398
                   A+ E   E   A  +   +              R           L+    + 
Sbjct: 544  GWQAPFDAVSETSPEVRLADKVRAEIGALIARGTQTGPMGRRRPLSYGDVLILVRRRGSA 603

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
               V   L R GI +  +  + L+  +    L +L +A+    D +A+A ++K PL    
Sbjct: 604  FDAVIQALKRGGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVVLKSPLFGLD 663

Query: 459  FPEKYLSRAKN----ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              + +    +        L            +  +       A  +       W      
Sbjct: 664  DDDLFKLAWQRKGSLRAALADHAAGDPRSAAVQHRLETYAARAQAETPFGFYAWLLGGDG 723

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             D   A +L     +    L  +     S     + S                   +   
Sbjct: 724  ADSGRARILRRLGPEANDALDEFLELALSFEQKRAPS------------------LQGFM 765

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
             W  E    +        +    +  +  + ++     +   T  P   +   L  L   
Sbjct: 766  AWLREADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLIDTTSSPADTQRLNLIRLPGG 825

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
             +   +   ++  G          A +P +    +S +  +T ++Y         M    
Sbjct: 826  NAAPGSVAAMVWAG--------RKADDPHIVEQARSAMIEETEDEYRRL--LYVAMTRAA 875

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ----CYLDWTRKLDYTTK 750
              LI    +  N        W   +     +                Y      +D T  
Sbjct: 876  DRLIVGGCMPGNRNEVRPHSWYDLISRGLESSGLVMQPVPPDGVIKRYCRPEDVIDETGA 935

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                      P  +   R        + +  P         +L              RGT
Sbjct: 936  AVPSHEAVATPLPDWLRRPAPGLPSAEQVLRPSDAEDDDRRRLRPGESDASRSRALQRGT 995

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
            L H ++  L +             + +      E++       ++      + +  F   
Sbjct: 996  LVHRLLQSLPEIAAADRPAAAGRFLARNASDWSEEDRAALAAQVLGLIADARFAAVF--- 1052

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
                     +  V I  ++      + ++G  DR+ + ++  V I DYKT   P +  A+
Sbjct: 1053 -----GPGSRAEVPIVGRLQWRGGPVLVSGQIDRLVVTET-EVLIVDYKTNHAPPRVEAE 1106

Query: 931  KLID--PQLSLEAAAL 944
                   QL+   A L
Sbjct: 1107 APRSYVRQLARYRAVL 1122


>gi|240113508|ref|ZP_04727998.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae MS11]
 gi|268599576|ref|ZP_06133743.1| exodeoxyribonuclease V [Neisseria gonorrhoeae MS11]
 gi|268583707|gb|EEZ48383.1| exodeoxyribonuclease V [Neisseria gonorrhoeae MS11]
          Length = 1069

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 104/875 (11%), Positives = 212/875 (24%), Gaps = 80/875 (9%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W             W  R ++    S         +  A
Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N  +    + ++      + ++ A +   E   +   L   L E+        A++T +
Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L  + + +    +   +  L
Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D        +        +
Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQAVDRMVLGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +       +    L T            ++ +W       L+ 
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +          +   E          +    G   +      I  I R +D E+      
Sbjct: 551 LFQAGPDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-- 738
                E     R  L  +   R+   +    +S  L  L+         N ++  Q +  
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMTGTNSRQLAQNWIE 724

Query: 739 -------------------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
                                     D+   L  T + P     +P              
Sbjct: 725 QHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPV-ENAEPVAEIGQD 783

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIKKRINKNTPEIN 832
           E  +   +P  V+ ++ L        +               I    I+ R      +  
Sbjct: 784 EFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFDPQHADQIAETYIEARREG--QDFA 841

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
               +I             +  +W+  F   +   
Sbjct: 842 QTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873


>gi|319404939|emb|CBI78541.1| ATP-dependent nuclease subunit A [Bartonella sp. AR 15-3]
          Length = 1151

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 85/822 (10%), Positives = 198/822 (24%), Gaps = 116/822 (14%)

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIP 240
             I  K + +     +           +            ++ +      I++  +  + P
Sbjct: 346  DIYLKIYADLKKANSFLDFDDLIERTLNLLQHKDASQWVQYKLDRGIDHILLDEAQDTNP 405

Query: 241  ATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH- 291
               +++  +A           N   V    D       +     ++              
Sbjct: 406  KQWQIIQLLAQEFFTGHSQRTNTRTVFAVGDEKQSIYSFQGAVPENFAENGRMFQKKAQQ 465

Query: 292  ---------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR-N 341
                       YS     D L       +   N           + +        D+   
Sbjct: 466  IEQKFEKIQLNYSFRSTADILKSVDLVFEIPENYKGLSAEHVKTVHEPIRTHSPGDVIIW 525

Query: 342  TDILENKIPNIQKCFSDVALIEADNER-EE--AISIAIALR--------MSLDENKKKSA 390
              I +          S V  +     R  E  A +IA  L+          L        
Sbjct: 526  DAISQKTNELPDDWLSTVDHLNTPQIRLAEKIAETIANWLKNGEILSAKKRLLRAGDIMV 585

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            L+         +   L    + +  +  + L+  +    L +L   + +  D +++A ++
Sbjct: 586  LVRKRDQFVPALSRALKLRHVPVAGADRLQLTAHISVRDLMALARFVLQPQDDLSLACVL 645

Query: 451  KHPLAKFGFPEKYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            K PL      E Y   A+   +L         +      +   + +   +  +   V  +
Sbjct: 646  KSPLFALSENELYQLAAQRTGSLWESLWTHASSHTSFKTIFDRL-NTYRSLVDKMPVFEF 704

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
             S +   DK    +L     +    L  +  +  +                 L+ + ++E
Sbjct: 705  YSYILNNDKGRQKILARLGTEANEVLDAFMDHTLAIQKTG-----LPGLQAFLEILSINE 759

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                  L      +    +    +     ++   +  +D                     
Sbjct: 760  PEIKRELD-----QNCEEVRIMTVHAAKGLEGAVVFLVD--------------------- 793

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
               G+           +   L +             ++     L+              +
Sbjct: 794  --PGSAIWHPQYAPYFLKFSLGDKQAFIWRPNAQHHTKHFDKLLSRLKERAEEEYKRLLY 851

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                     +        +          +L+          +K   +    W   +  +
Sbjct: 852  VGMTRAEDRLIIC---GYSNQKETPNTWLQLVKKALKPHAVPIKGPAEDIAAWRYCITSS 908

Query: 749  -------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA--------------VYA 787
                          +  P  P     +  + S + + +    A                 
Sbjct: 909  CSTPTYKEMPCETHQAFPPLPAFFHDKMPTESTLSKPLRPSVADIIDTKTKFSNNKHFSL 968

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
              +L               + G   H ++  L      K   +          SH+ K  
Sbjct: 969  SPVLGEKNTKRTF----SIEYGNFIHQLLQHLPDLPPIKR-HDYAQFYLNTKASHWHKSQ 1023

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRI 905
                +  IW         + L++ + I          +     + I      ++G  DR+
Sbjct: 1024 RENALHHIW---------TILDNPQLIPLFSSLSHAEVALIGIVKINGKEQMVSGQIDRL 1074

Query: 906  DLLKSGFVDITDYKTGDNPKKE-TAQKLIDPQLSLEAAALKA 946
             +  +  V   D+KTG  PK +    +    Q++L    L+A
Sbjct: 1075 CITHN-SVFFADFKTGLPPKNDTDIAQRHLLQMALYQKLLQA 1115


>gi|161870566|ref|YP_001599738.1| exodeoxyribonuclease V gamma subunit [Neisseria meningitidis
           053442]
 gi|161596119|gb|ABX73779.1| exodeoxyribonuclease V gamma subunit [Neisseria meningitidis
           053442]
          Length = 1028

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 97/844 (11%), Positives = 215/844 (25%), Gaps = 57/844 (6%)

Query: 56  AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115
             + L +      G  + +     SL   +  K    L+       P +       L  L
Sbjct: 1   MRRYLNTCLARDLGVAANLS---FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDL 57

Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
                 +     +D+       L    +    LA  LADI D       +W D       
Sbjct: 58  FRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRR 117

Query: 176 KYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232
                   W                R ++    S         +  A            +
Sbjct: 118 LGLGDDEIWQSKLW-----------RYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFV 166

Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
            G +   P   +L+  ++ H +  +             W  + E +  +        T  
Sbjct: 167 FGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQA 222

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
            + L   L        D      +  E          + L    +D++N  +    + ++
Sbjct: 223 GHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSV 282

Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-- 406
                 + ++ A +   E   +   L   L E+        A++T            +  
Sbjct: 283 NTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPHIESYTPFIEAVFG 342

Query: 407 ----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFG 458
                   +   +S             L+ L + +    +   +  L++           
Sbjct: 343 QAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLT 402

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
             +  L     A   V    +       D        +        +P   + + ++   
Sbjct: 403 EDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSA 462

Query: 519 LAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
               +       +    L T            +I +W       L+ +   E     ++ 
Sbjct: 463 WYADVNQTALFGRFAALLETLSDIVRIWRQPATIGEWVARCRDLLETLFQAEADDQKSVQ 522

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             E         +++ +    +       I  I R +D E+          +     +  
Sbjct: 523 NLENEWVKWQAETELAQFSGQLP--QQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPM 578

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           R L F  + L GLN+G +P+NT    F           +             E     R 
Sbjct: 579 RSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISARE 636

Query: 697 -LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
            L  +   R+   +     S  L  L+           ++  Q +++             
Sbjct: 637 ILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIEQHPLQ---AFSRR 693

Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
           Y +           RT   + + Q    P   + + +   + +    +D    +    + 
Sbjct: 694 YFQEGGRSDGIFGTRTDYATALGQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWR 749

Query: 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
           N +   +++++  + P     + +  +     E               +    F +   +
Sbjct: 750 NPVKVWLQQQLAWSEP----HIGEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAAR 805

Query: 874 IQSS 877
           I + 
Sbjct: 806 IGAE 809


>gi|256843262|ref|ZP_05548750.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus
           125-2-CHN]
 gi|256614682|gb|EEU19883.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus
           125-2-CHN]
          Length = 1159

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 102/975 (10%), Positives = 240/975 (24%), Gaps = 149/975 (15%)

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                 +         L   + +    + LA +I   +++L             ++  + 
Sbjct: 71  SFSRLAWFFLKDAEQGLPNQLDDAASAMLLAHIIENKKDEL-------------TILENV 117

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                L   L   I  +       +++     +            L+I    + + +   
Sbjct: 118 NVNSGLVNQLYQTILQVYDGNLDLDEISE---DNLDQETKNKLHDLRIIYDAFIKEIA-- 172

Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
              S        +           +        +         +  +       I+    
Sbjct: 173 GKFSTKNEVQLQLNEILAKSKNLKQASFYFCDFSHFSLQETLTIKILMRKAKDVIL---- 228

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
                   + T   +  +            Q ++ +L   L ++   +  +         
Sbjct: 229 -------AFKTRLGEINSSAEEGDYDYV-IQQTIKRL--TLFLQERKMDYVTATFPLNSQ 278

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            +     + L  +T                      V L++AD+   EA  +A  +   +
Sbjct: 279 SNGREILNSLWTETIPKV-------------DELKQVQLVKADSRYAEAYFVARTIYQQV 325

Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              +       ++  +           L +  I         +       ++ SL N   
Sbjct: 326 ALSNYRYHDFLILAPNLKEYETYLTPILRQNQIPFFNDLQQEMKYHPLVVLIESLFNLHE 385

Query: 439 KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                  +  ++K  L    +   E       + LE   L    N            + +
Sbjct: 386 NPFQTQNMLAILKTHLLIPSWYKEEAEYIHDVDELENFVLAHGINHNLWK---KHFDNFV 442

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +         +    +  +   V  +    + I      +         L+ +     
Sbjct: 443 NAEVIRLDKMDDEVAKIDRLRSYLVDKISTFFKIIEQEKDSQKALTIFFEFLTKNGIADR 502

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                         +      E+    L  L    +        +  E+ +++       
Sbjct: 503 LEKWRDEANEAGDLQQAQQ-PEQLWDLLMQLLQDYLAINPE-TFDLNEFFNMLISAFREA 560

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673
                      + +      +   +  + + G      P+      FL+    + L    
Sbjct: 561 NFSQIPSTLDAVNLSEMGMVQTSGYKQVFIIGATANNLPQIQKMPGFLTTENLNQLQNSF 620

Query: 674 -----LKTAEKYIGQAAHD---FEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGG 724
                L+ +++      +      +A     +  +  +   +N     S + QRL   G 
Sbjct: 621 NSESYLEDSQQLNNLDQNYQFGLSLALAQDRVYVSYPVLNASNEELDPSIYYQRLKDYGA 680

Query: 725 TDFFD-NLKKRGQCYL-----------------------DWTRKLDYTTKQPHYKRPKPF 760
             F   +L ++ Q  L                            L  T +Q   K     
Sbjct: 681 QQFVQHDLPEKMQDLLSFITNPDASLGYLTYMNSINSGLAVQELLKITQEQLPQKTKTVL 740

Query: 761 PPLEAQPRTY-----------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
              +   +                   S S+++    + Y  +    LKL     F+ + 
Sbjct: 741 EASDFDNQPENIGQDLASQLYGQNLNSSVSQLETFYENSYEYFLNYGLKLRRR--FENEF 798

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEI------NHLMKQIIDSHFEKENLPPH-----I 852
           D    G  FH     L+KK   ++T            M   + +  + E           
Sbjct: 799 DVIQAGNYFHETFDRLVKKLNKQHTDLADLSSIELEQMLNSVRNVMKDEGKYSQLMNDPF 858

Query: 853 DIIWRHLFH----KISHSFLEHEEKIQSSIEKIFVNIPAKM--AIESIGIH--------- 897
           +            K++H++    ++  + +   +  +   +   I+ + +          
Sbjct: 859 NQYLFKCLDHTTSKVAHNWRRSLKE--TPLRAKYSELSFGLGEKIKGLSLKVPDISGQHK 916

Query: 898 --LTGFADRIDL----LKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS- 948
             L G  DR+DL     K   +  + DYK+             I  Q+      L     
Sbjct: 917 VDLRGKMDRVDLANFNDKDQVLAQVIDYKSSAKKFDLGMFYNGIALQMVSYLDVLTKNDQ 976

Query: 949 -FSQIDCRKVANLFY 962
            F+  D   +   FY
Sbjct: 977 FFAGKDRLSLLGAFY 991


>gi|240116139|ref|ZP_04730201.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae PID18]
 gi|268601806|ref|ZP_06135973.1| exodeoxyribonuclease V [Neisseria gonorrhoeae PID18]
 gi|268585937|gb|EEZ50613.1| exodeoxyribonuclease V [Neisseria gonorrhoeae PID18]
          Length = 1068

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 102/876 (11%), Positives = 220/876 (25%), Gaps = 69/876 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W             W  R ++    S         +  A
Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N  +    + ++      + ++ A +   E   +   L   L E+        A++T +
Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L  + + +    +   +  L
Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D                 +
Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAADRMILGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +    +       L T            ++ +W       L+ 
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +          +   E          +    G   +      I  I R +D E+      
Sbjct: 551 LFQAGLDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                E     R  L  +   R+   +    +S  L  L+         N ++  Q +++
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMTGTNSRQLAQNWIE 724

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                        Y +           RT   + + Q    P   + + +   + +    
Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIG 781

Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
           +D                  +  +     ++      I ++    E   P          
Sbjct: 782 QDE------------FIRFWRNPVKVWLQQLAWSEPHIGEAWEPAEPFEPQH-------A 822

Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
            +I+ +++    +      +    I A+  + S  +
Sbjct: 823 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 857


>gi|295693035|ref|YP_003601645.1| ATP-dependent helicase/nuclease subunit b [Lactobacillus crispatus
           ST1]
 gi|295031141|emb|CBL50620.1| ATP-dependent helicase/nuclease subunit B [Lactobacillus crispatus
           ST1]
          Length = 1159

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 102/975 (10%), Positives = 240/975 (24%), Gaps = 149/975 (15%)

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                 +         L   + +    + LA +I   +++L             ++  + 
Sbjct: 71  SFSRLAWFFLKDAEQELPNQLDDAASAMLLAHIIENKKDEL-------------TIFENV 117

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                L   L   I  +       +++     +            L+I    + + +   
Sbjct: 118 NVNSGLVNQLYQTILQVYDGNLDLDEISE---DNLDQETKNKLHDLRIIYDAFIKEIA-- 172

Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
              S        +           +        +         +  +       I+    
Sbjct: 173 GKFSTKNEVQLQLNEILAKSKNLKQASFYFCDFSHFSLQETLTIKILMRKAKDVIL---- 228

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
                   + T   +  +            Q ++ +L  FL  ++ D        N    
Sbjct: 229 -------AFKTRLGEINSSAEEGDYDYV-IQQTIKRLTLFLQERKMDYVTATFPLNSQPN 280

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
              +++  +                           V L++AD+   EA  +A  +   +
Sbjct: 281 GREILNSLWTETI---------------PKVDELKQVQLVKADSRYAEAYFVARTIYQQV 325

Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              +       ++  +           L +  I         +       ++ SL N   
Sbjct: 326 ALSNYRYHDFLILAPNLKEYETYLTPILRQNQIPFFNDLQQEMKYHPLVVLIESLFNLHE 385

Query: 439 KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                  +  ++K  L    +   E       + LE   L    N            + +
Sbjct: 386 NPFQTQNMLAILKTHLLIPSWYKEEAEYIHDVDELENFVLAHGINHNLWK---KHFDNFV 442

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +         +    +  +   V  +    + I      +         L+ +     
Sbjct: 443 NAEVIRLDKMDDEVAKIDRLRSYLVDKISTFFKIIEQEKDSQKALTIFFEFLTKNGIADR 502

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                         +      E+    L  L    +        +  E+ +++       
Sbjct: 503 LEKWRDEANEAGDLQQAQQ-PEQLWDLLMQLLQDYLAINPE-TFDLNEFFNMLISAFREA 560

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673
                      + +      +   +  + + G      P+      FL+    + L    
Sbjct: 561 NFSQIPSTLDAVNLSEMGMVQTSGYKQVFIIGATASNLPQIQKMPGFLTTENLNQLQNSF 620

Query: 674 -----LKTAEKYIGQAAHD---FEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGG 724
                L+ +++      +      +A     +  +  +   +N     S + QRL   G 
Sbjct: 621 NSESYLEDSQQLNNLDQNYQFGLSLALAQDRVYVSYPVLNASNEELDPSIYYQRLKDYGA 680

Query: 725 TDFFD-NLKKRGQCYL-----------------------DWTRKLDYTTKQPHYKRPKPF 760
             F   +L ++ Q  L                            L  T +Q   K     
Sbjct: 681 QQFVQHDLPEKMQDLLSFITNPDASLGYLTYMNSINSGLAVQELLKITQEQLPQKTKTVL 740

Query: 761 PPLEAQPRTY-----------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
              +   +                   S S+++    + Y  +    LKL     F+ + 
Sbjct: 741 EASDFDNQPENIGQDLASQLYGQNLNSSVSQLETFYENSYEYFLNYGLKLRRR--FENEF 798

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEI------NHLMKQIIDSHFEKENLPPH-----I 852
           D    G  FH     L+KK   ++T            M   + +  + E           
Sbjct: 799 DIIQAGNYFHETFDRLVKKLNKQHTDLADLSSIELEQMLNSVRNVMKDEGKYSQLMNDPF 858

Query: 853 DIIWRHLFH----KISHSFLEHEEKIQSSIEKIFVNIPA---------KMAIESIG---- 895
           +            K++H++    ++  + +   +  +            + +  I     
Sbjct: 859 NQYLFKCLDHTTSKVAHNWRRSLKE--TPLRAKYSELSFGLGEKIKGLSLEVPDIPGQHK 916

Query: 896 IHLTGFADRIDL----LKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS- 948
           + L G  DR+DL     K+  +  + DYK+             I  Q+      L     
Sbjct: 917 VDLRGKMDRVDLANFNDKNQVLAQVIDYKSSAKKFDLGMFYNGIALQMVSYLDVLTKNDQ 976

Query: 949 -FSQIDCRKVANLFY 962
            F+  +   +   FY
Sbjct: 977 FFAGKNRLSLLGAFY 991


>gi|260662572|ref|ZP_05863467.1| ATP-dependent nuclease subunit B [Lactobacillus fermentum 28-3-CHN]
 gi|260553263|gb|EEX26206.1| ATP-dependent nuclease subunit B [Lactobacillus fermentum 28-3-CHN]
          Length = 1245

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 120/1074 (11%), Positives = 273/1074 (25%), Gaps = 197/1074 (18%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                  +           P +SN+   + +A++I   + + PD+         L +    
Sbjct: 74   SFSRLGWFLCKDDPDYQKPRLSNVGMAMVVAKIIRELKAESPDL---------LKMFRGE 124

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLH----------ALKNEKYGMWWLLAADF---LK 189
            +        +   +  ++    +  DL           AL ++  G     +  F   + 
Sbjct: 125  SERQGFVTAVTKQLVELQNANIQPADLAPDQETGIIKRALASQTGGGRASQSTVFTDKMT 184

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG-SIPATARLMST 248
            +  + +      +        + A++    E     +   + +    G        ++  
Sbjct: 185  VLYEIYRRFEAAVTTHVTAPDRSAMLLNHLE-AADLSTTHVYLDRFAGEFSAQEQLIVDA 243

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +        V   LD                           +  Y  AK    L     
Sbjct: 244  LIQRAADTTVSLILDRDY---------------RGREMPSQNNLYYRSAKQYQDLLNLAT 288

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                +  +   +  +      S       +    D        +      V    A    
Sbjct: 289  QQVGVDVLDPIVLNQPNQRRVSDALVGVEEWMEADARFALPDRLPAPTDQVGFFTAPTRV 348

Query: 369  EEAISIAIALRMSLD---ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424
             E   +A  +R  +       +   ++T   +  + +     +R  I +      P++T+
Sbjct: 349  AELNRVATKIRQLVATGQYRYRDFLVVTRHLDGYQTMLEPIFSRHQIPVFNDNQRPMATS 408

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLA------------KFGFPEKYLSRAKNALE 472
              ++   +L   +        +  L+K  L             +          A    E
Sbjct: 409  PLATFTAALFKVLKDYYQEADVMELLKTGLLVPETPEELQQEGRAKRNPNTFMTAVYRTE 468

Query: 473  LVALRGNKNSYDIMDLKSLVL----DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
               L+  K      D +   L          K      +W     +++   A+  +    
Sbjct: 469  NYCLKFGKGGRSWFDERPWRLEGEQPESDALKRQNAQINWVKNYIKDELAPALADLQTAT 528

Query: 529  QCITPLVTYKTNKNSTCGNLSISDW------------TKLTVTCLQNVCLDEHRKLPNLW 576
                    +            +  W             +      Q         +  L 
Sbjct: 529  TGRELATKFYQFLLDQGVRHQLYSWAHQAQESGQLTQLRDVQQIWQTFGTLLDEYVTILG 588

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDI---ITRLIDGETVKPKIEKSSTLFILGT 633
             +                      NA  +  I   + +++  E+   +  +   LFI+G 
Sbjct: 589  DQVAPTEQPGQLVAEFADLMNAGFNAGRYAQIPSTLDQVLVSESGMIQDNQRKVLFIMGA 648

Query: 634  LESRLLNFDTLILG-----------GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI- 681
             +  +                    GLN+  +   +  +   +    + L++ +  + + 
Sbjct: 649  TDDVMPEVKASEGLLSDPDRELLKRGLNDDQFLPISGTDQINNEPFLNYLSMLSVTERLY 708

Query: 682  --------------------GQAAH--------------------------DFEMANGTR 695
                                G A H                          D        
Sbjct: 709  MSAPLMSSDDSELTLSPYLKGLARHFNQWDDQNNVPTTDLPDRPNPRASEDDVWSFVAAP 768

Query: 696  HLI---YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             +         R +           R +    T   + L  R     D     +      
Sbjct: 769  AVTMGNLIEVERLSKDTGRKLTSAWRDVARALTRHDEGLTGRLNDIRDGQYAKNEAVPLQ 828

Query: 753  HYKRPKP----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                 +              T S S++++   +PY  + R  L L      +   D++  
Sbjct: 829  PELAARLYTTNRQGQVTNQLTASISQLEKFYQNPYDYFLRYGLHLKKRDELEVSSDKS-- 886

Query: 809  GTLFHNIITELIKKRINKNTPEINHLM--------KQIIDSHFEKE-NLPPHIDIIW--- 856
            GTL H+ +   ++  I++   ++  L+         ++ID  FE+  N    +  +    
Sbjct: 887  GTLNHDALAFFVQSVIDEPDLQLADLVKEEHQGRQAELIDQAFEQAMNQQEELRELAANN 946

Query: 857  ------RHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAK----------MAIESIGIHL 898
                    +  ++  +  +    +  Q+  + + V                 + ++   L
Sbjct: 947  SRVNLQLQVAKQLITTMAKTLCLQATQTDAQPVAVEKAFGQADWTGESQAAELPALTFDL 1006

Query: 899  T-------------GFADRIDLLKSGF---VDITDYKT-GDNPKKETAQKLIDPQLSLEA 941
            T             G  DR+D LK G      + DYK+         A      Q+    
Sbjct: 1007 TGAGLGEGAKVSLWGRIDRLDELKLGEQTYQLVVDYKSYNKAFDLVDAYAGQALQMLAYL 1066

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
             AL+    +     ++    Y+RL          +  K+ +A+EL E   + + 
Sbjct: 1067 NALQ----AANPGEQLLGSLYLRL-----YVPTVDAGKEGTAEELKEHLYQGIT 1111


>gi|240014618|ref|ZP_04721531.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae DGI18]
 gi|240121140|ref|ZP_04734102.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae PID24-1]
          Length = 1068

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 102/876 (11%), Positives = 220/876 (25%), Gaps = 69/876 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W             W  R ++    S         +  A
Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N  +    + ++      + ++ A +   E   +   L   L E+        A++T +
Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L  + + +    +   +  L
Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D                 +
Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAADRMILGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +    +       L T            ++ +W       L+ 
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +          +   E          +    G   +      I  I R +D E+      
Sbjct: 551 LFQAGPDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                E     R  L  +   R+   +    +S  L  L+         N ++  Q +++
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMTGTNSRQLAQNWIE 724

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                        Y +           RT   + + Q    P   + + +   + +    
Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIG 781

Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
           +D                  +  +     ++      I ++    E   P          
Sbjct: 782 QDE------------FIRFWRNPVKVWLQQLAWSEPHIGEAWEPAEPFEPQH-------A 822

Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
            +I+ +++    +      +    I A+  + S  +
Sbjct: 823 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 857


>gi|284033229|ref|YP_003383160.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
 gi|283812522|gb|ADB34361.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
          Length = 1079

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 96/987 (9%), Positives = 245/987 (24%), Gaps = 169/987 (17%)

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
               F   L+  + L   +    R+L  A    +    +      +   +   +P    + 
Sbjct: 129  YHAFAGTLIAEHGLRLGLEPDVRVLADATRYQLAGRVVRRSAGPIR-YASHHVPTLVNSL 187

Query: 146  IWLAKNLADII---------DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
            + L   LAD +         D    +E        ++ +K     L   + L++  + + 
Sbjct: 188  LSLDGELADHLLRADEIRDHDEAVRQEVAAAPKQTVEVKKLAETALKRGEILQLVEE-YQ 246

Query: 197  ERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
                E              R   +      + +     +++     +  +  R+++ +  
Sbjct: 247  AYKAERGVVDFADQMALGARLAEQCPEVPAIERSRYKVVLLDEYQDTSVSQRRMLTALFA 306

Query: 252  HPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
             P+     G  V    D       W   +  + +    +   +         L       
Sbjct: 307  GPDPEHGRGHPVTAVGDPCQAIYGWRGASVANLDEFPEHFRNADGTPARRYVL------- 359

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEAD 365
                         +  R      +      +++         +          + +   +
Sbjct: 360  ------------SVNRRCGSRILAAANEHATELYEQHPGVIPLEAPDGAPEGAITVGLFE 407

Query: 366  NEREEAISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
               +E   IA ++  +     +      ++         V   L    + +++     L 
Sbjct: 408  TRSQEIEWIADSIVAAHKTPNRRWKDIGILMRTNVDLSAVHEALIARKVPVEVVGLGGLL 467

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
                   + + L A+  L    A+  ++  P  + G  +  L   ++             
Sbjct: 468  ALPEVVDVVATLQAVNDLTANAAMLRILTGPRYRIGHRDLALLANRSRALADGGDRPAAD 527

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
              +  L + V    +T+  +                 +   ++        L T      
Sbjct: 528  DLVAALDAAVAGMDSTEVISLA--EAVDDPGPAGWGYSPEALER----FQELSTELRELR 581

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
            +  G   +    ++  T   +V L       +    +            + T S    + 
Sbjct: 582  AHAGEPLLDLVRRVISTIGLDVELTATPDHVDSGRRDHLAAFLDAVGNFVSTESDGSLDG 641

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +                    ++ ++ +L T  S+ L +  + +  L   V+P +  ++ 
Sbjct: 642  LLAYLAAEEEYAAGLDLAVPSEADSVKLLTTHRSKGLEWPVVFVPTLVNKVFPSDRGRDK 701

Query: 663  F------LSRVMQSDLNLKTAEKYI------------------GQAAHDFEMANGTRHLI 698
            +      L   ++ D +       +                   +    +      + ++
Sbjct: 702  WTTNAKVLPWPLRGDADTLPDFHDLSNAGLKAFSDECKQVNSLEERRLGYVAFTRAKEVL 761

Query: 699  Y---TRSLRENNIPTIASRWLQRLLVLGG----------------TDFFDNLKKRGQCYL 739
                         P   S +L+ L    G                 +  +  +       
Sbjct: 762  IATGHWWGPTQKRPRGPSAYLEMLKKHAGDRVIAWAPQPELSEENPELAEQTQAAWPAPY 821

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQ--------------------------------- 766
            D              ++ +   P                                     
Sbjct: 822  DAEAYRRRLEGAALVQQARAEGPSAEAEESLLLDEQATVARWDSELERLLSEARESRSRK 881

Query: 767  ------PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
                  PRT S +++ +L  DP  + A  + +       +        GT FH  +    
Sbjct: 882  AYDVELPRTLSATQVMRLAKDPDGL-ATELARPMPRKPNR----AARFGTRFHAWVESYF 936

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
             ++   +  ++              E +    D+       ++                 
Sbjct: 937  GQQFLLDPDDLPGA---------ADEGIVDDTDLTELMDAFRVGP---------YGEKAP 978

Query: 881  IFVNIPAKMAIESIGIHLTGFADRI--DLLKSGF--VDITDYKTGDNPKKETAQKLIDPQ 936
              +  P  ++I      + G  D +   +   G    D+ D+KT  +   +        Q
Sbjct: 979  YEIEAPFALSIGGR--VVRGRIDAVYQVVRPDGSRGYDVVDWKTSRSETADP------LQ 1030

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYI 963
            L++   A        I   +V   FY 
Sbjct: 1031 LAIYRVAWAE--LLGIPLTQVGAAFYY 1055


>gi|255068462|ref|ZP_05320317.1| exodeoxyribonuclease V, gamma subunit [Neisseria sicca ATCC 29256]
 gi|255047304|gb|EET42768.1| exodeoxyribonuclease V, gamma subunit [Neisseria sicca ATCC 29256]
          Length = 1068

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 113/902 (12%), Positives = 237/902 (26%), Gaps = 92/902 (10%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            LA+  I V ++   + L        G  + +     SL   +  +    L+       P
Sbjct: 29  ALAAEQIVVQSQGMRRYLSVYLARELGVAANLQ---FSLPAGLTWQLMQKLIPDIPALSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       L  L    R +     +++       L    +    LA  LADI D     
Sbjct: 86  FSPEVMRWRLLDLFRSERFQTTSEFENVRSILQSYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W D      L  L  ++    W           + W  R ++    S         +
Sbjct: 146 RPQWIDAWQEGKLLGLGEDEV---WQA---------QLW--RYLDDGNQSAPHRVALWEK 191

Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
             +            + G +   P   +L+  ++ H +  +            +     +
Sbjct: 192 LLSSLDKAHLPERFFVFGISTMAPMYLQLLQKISEHCDVFVFALNPSGQYWGNVIEAA-Q 250

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV--SNEMYGRSMVISKSFLPP 334
                  ++ + + HP      LL  L  +  D           E      V   + L  
Sbjct: 251 LLKGGDEADLSQTGHP------LLASLGKQGRDFFDFLTEIGLEEQPVFEEVSDDTLLHC 304

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSA 390
             +D++N  +              + ++ A +   E   +   L   L E+        A
Sbjct: 305 LQNDIQNLRMPSEHSRADLLGDGSIRIVSAHSPLRELQILKDKLLRILHEHPDWQPHDIA 364

Query: 391 LITADRNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
           ++T +          +          +   +S             L   L+ +    +  
Sbjct: 365 VLTPNIEPYSPFIEAVFGQAQGGAQALPYSVSDVKLSRRQSLLYALEQTLDLLESRFEVD 424

Query: 445 AIATLVKHPLA----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
            +  L++  L          +  L     A   V    +       D        +    
Sbjct: 425 KVLPLLESGLVLRRFGLTADDLPLLHDTVAELNVHWGLDGTMRGAADNLFTWQQALERIV 484

Query: 501 NNTHVPHWQSRLSEEDKELAVLL--VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
               +P   S L +        +  +D   +    + T            S  +WT+   
Sbjct: 485 LGWMLPDDGSPLWQNVSAWHGDVNRLDVFGRFAAFIRTLSRLAAEWRKPASAEEWTERCR 544

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
             +Q++ L +      L  ++  + L+    +    G          I  I R +  E+ 
Sbjct: 545 DLVQSLFLPDADDQYAL--QQFEQALAKWQEETALAGFSGTLPQHTVIRHIRRFLGSES- 601

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                    +     +  R L F  + L GLN+G +P+NT    F           +   
Sbjct: 602 -QAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPQKGDRARR 660

Query: 679 KYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
                     E     R  L  +   R   N+     S  +  L+           K   
Sbjct: 661 DDDRY--LFLEAIISARDILYLSYVGRSIRNDDELAPSALVSELIDTIAAMTGRRSKGLA 718

Query: 736 QCYLDW----------------------TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
           + +++                       TR+          ++ +PF     +  T   +
Sbjct: 719 EHWVEQHPLQPFSHRYFIADNISDDLFSTRQDYAEALNRPREQARPFFSEALEENTPVPT 778

Query: 774 EIK----QLINDPYAVYARRILKLDFI--PHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             +    +   +P   + ++ L           +  +  +           L  +R N++
Sbjct: 779 VWQDDFIRFWKNPVKAWLQQTLGWREPYRDEAWESAEPFEPQRADKIAAAYLDARRHNQD 838

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
             E    +        E       +  +W+  F   +   ++        +      +P 
Sbjct: 839 FQETAVRLDA------ESLLPAGELGKLWQQNFQAAAKR-IDGALLQSPKLPPFAYEVPF 891

Query: 888 KM 889
             
Sbjct: 892 DG 893


>gi|218509238|ref|ZP_03507116.1| hypothetical protein RetlB5_17865 [Rhizobium etli Brasil 5]
          Length = 149

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/144 (46%), Positives = 98/144 (68%), Gaps = 2/144 (1%)

Query: 5   KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
           +P + TI    PF + +   L +G L   F++D  +PL LA VTIY+PT+RA++ LRSEF
Sbjct: 6   QPRILTIPAGLPFLKTLATTLCDGRLTPLFQHDVDDPLSLARVTIYLPTRRAVRVLRSEF 65

Query: 65  IEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
           +++ G +S ILP+I+ LG+  ++   F   L  + +L  P+SN  RLLELARLIL WRNK
Sbjct: 66  VDLLGGRSAILPVIRPLGETDDDSGYFDEALPATIDLAQPLSNTARLLELARLILAWRNK 125

Query: 123 LPDIIKDLYPESPLSLPISPANAI 146
           LP+I++ ++ +SPL  P SPA+AI
Sbjct: 126 LPEIVRHIHSDSPLVAPASPADAI 149


>gi|254494158|ref|ZP_05107329.1| exodeoxyribonuclease V [Neisseria gonorrhoeae 1291]
 gi|226513198|gb|EEH62543.1| exodeoxyribonuclease V [Neisseria gonorrhoeae 1291]
          Length = 1068

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 101/876 (11%), Positives = 222/876 (25%), Gaps = 69/876 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W             W  R ++    S         +  A
Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N  +    + ++      + ++ A +   E   +   L   L E+        A++T +
Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L  + + +    +   +  L
Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D                 +
Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAADRMVLGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +    +       L T            ++ +W       L+ 
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +          +   E         +++ +    +       I  I R +D E+      
Sbjct: 551 LFQAGPDDQKAVQNLENEWVKWQAETELAQFSGQLP--QQTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                E     R  L  +   R+   +    +S  L  L+         N ++  Q +++
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMTGTNSRQLAQNWIE 724

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                        Y +           RT   + + Q    P   + + +   + +    
Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIG 781

Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
           +D                  +  +     ++      I ++    E   P          
Sbjct: 782 QDE------------FIRFWRNPVKVWLQQLAWSEPHIGEAWEPAEPFEPQH-------A 822

Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
            +I+ +++    +      +    I A+  + S  +
Sbjct: 823 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 857


>gi|323704721|ref|ZP_08116299.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536183|gb|EGB25956.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 1073

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 120/1068 (11%), Positives = 297/1068 (27%), Gaps = 143/1068 (13%)

Query: 50   YVPTKRAIQELRSEFIEITG---------------KKSTILPIIKSLGDVVEEKFTADLL 94
               T++A  E++    +                  + S I   I ++    E+    D  
Sbjct: 61   ITFTRKAAAEMKERIRKEIESLCKSDKDGKKWTVFRDSLIFANIDTIHGFCEKMIR-DNF 119

Query: 95   LSYNLNPPVSNIQRLLELARLILIWRNKLPDII------KDLYPESPLSLPISPANAIWL 148
            +  +++P  S +    E++  +      +   +      K +   +    P         
Sbjct: 120  VETSVDPTFSIMDE-AEVSTAVKKMVEIVTGEVINDEKNKYMLATALKKYPSKIFTGKMF 178

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYG--MWWLLAADFLKIASKYWTERLVELNASS 206
               +  +   ++      ED+               LA   L+   + +       N   
Sbjct: 179  QSEVISLYFRMKEAGLSVEDIKLSYESDESTKAMENLALIILEKIEENYKAFKSSKNLLD 238

Query: 207  PVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTV----ANHPNGAIV 258
                +   ++        +        I++     +      ++  +       P+G + 
Sbjct: 239  FNDLETIALKLLSNDIIRNDYFERYRYILVDEFQDTNRLQKEIILKLTEKDGKIPDGKLF 298

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY-----------------SLAKLLD 301
            +   D       +     +  +                                   L++
Sbjct: 299  I-VGDIKQSIYGFRGTDFRIFDEFCRKIEADGKVLNLSNCYRSTKNIISTINDVFKNLIE 357

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
              +  +           E+         +        ++     ++    + +   +   
Sbjct: 358  PYEELKYQSFADEGPKVELITYKKDDIVNEKNERYKKIKQLLKDDDNKGKLNELLMEDGA 417

Query: 362  IEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            +    +  +   IA  +   + E    K  A++   R+  + ++  L   GI   I  GI
Sbjct: 418  LANSRKDFQGKIIAGRILKLVGEGFEYKDIAVLLRSRSSLKSIEGALADCGIPYCIIGGI 477

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL--R 477
                      + S+    F  +D +A+ T ++ P+  F   + +        + +     
Sbjct: 478  GFWDKREIIDIISVYKLAFDTSDEIALLTALRSPIFGFSDDDLFAFMNIYNGQCIDDPLE 537

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
              KN          V+ R     +            E  K +       I +    L++ 
Sbjct: 538  ALKNFSPKCGDDKWVIKRACNILDKISKMRGVYNPYEIFKMIL-----KITEYKKLLISL 592

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                        +    K           D    L  L       + + L ++       
Sbjct: 593  PNGYQKFRNVEKLESIIKSFEEKRILDSKDLIEYLDALKESSSLDSEAFLDTEESNAVKI 652

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +  ++ + ++    +I         + +  + +       L     +   G+N+      
Sbjct: 653  MTIHSSKGLEFDAVIIPDM-----DKATDGISVRKAPLFMLSEEGYIFCIGVNDDGDLDK 707

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR------SLRENNIPTI 711
            +  + +     +        EK   ++   F +A+               ++ + +  + 
Sbjct: 708  SENSLYKEEYDRY------LEKENMESRRLFYVASTRAKKFLAFIGQMKDNIDDIDEDSK 761

Query: 712  ASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
             + ++++LL                 L+   +  LD+ ++L+    +  +       PL 
Sbjct: 762  LNSFMKQLLFAIKDGCSNIDYIDGTCLQSYAKNKLDYVKELNEDADKIKFGGLIDKMPLN 821

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLD----FIP--------HFKKDPDRTDRGTLF 812
             +    S +     +  P   Y + I+ L      +                  +RGT+ 
Sbjct: 822  VKGN-VSVTAYIDYLTCPMFYYYKYIVSLTDEYVELDGNSDDIYSESDDKISALERGTIV 880

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H I+  L     + +  ++++L  +II  + +   +             KIS   L+  +
Sbjct: 881  HKILETL----DDDDYIDVSNLNDEIIKRYIDNYYMLRDKHR------KKISGRLLKRLK 930

Query: 873  KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK-SGFV--DITDYKTGDNPKKET- 928
                           +  I+   I+L G  DRID+ +  G +   I DYKT      +  
Sbjct: 931  -----------EYKFRAPIDD-NINLNGVIDRIDIYENDGNIESYIFDYKTNKIDSDDDL 978

Query: 929  --AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
                +   PQ+ + +  L+      I            LK  F          +    +L
Sbjct: 979  EKIARHYTPQIHVYSHVLRR--LKTISGFSPT------LKGAFLYFLDVGKYVEVDISDL 1030

Query: 987  SEKSLKNLIEIVTL--LQNGEQP---FISHLRLSEKSNIQSEYDHLAR 1029
                ++ L +I+       G +    ++S  R   +      Y+ + R
Sbjct: 1031 Y--IMETLEKILKATPFLLGAKGIEEYVSRKR---EYCSMCLYNKICR 1073


>gi|293380926|ref|ZP_06626960.1| putative ATP-dependent nuclease subunit B [Lactobacillus crispatus
           214-1]
 gi|290922501|gb|EFD99469.1| putative ATP-dependent nuclease subunit B [Lactobacillus crispatus
           214-1]
          Length = 1159

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 102/975 (10%), Positives = 240/975 (24%), Gaps = 149/975 (15%)

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                 +         L   + +    + LA +I   +++L             ++  + 
Sbjct: 71  SFSRLAWFFLKDAEQGLPNQLDDAASAMLLAHIIENKKDEL-------------TIFENV 117

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                L   L   I  +       +++     +            L+I    + + +   
Sbjct: 118 NVNSGLVNQLYQTILQVYDGNLDLDEISE---DNLDQETKNKLHDLRIIYDAFIKEIA-- 172

Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
              S        +           +        +         +  +       I+    
Sbjct: 173 GKFSTKNEVQLQLNEILAKSKNLKQASFYFCDFSHFSLQETLTIKILMRKAKDVIL---- 228

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
                   + T   +  +            Q ++ +L   L ++   +  +         
Sbjct: 229 -------AFKTRLGEINSSAEEGDYDYV-IQQTIKRL--TLFLQERKMDYVTATFPLNSQ 278

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            +     + L  +T                      V L++AD+   EA  +A  +   +
Sbjct: 279 SNGREILNSLWTETIPKV-------------DELKQVQLVKADSRYAEAYFVARTIYQQV 325

Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              +       ++  +           L +  I         +       ++ SL N   
Sbjct: 326 ALSNYRYHDFLILAPNLKEYETYLTPILRQNQIPFFNDLQQEMKYHPLVVLIESLFNLHE 385

Query: 439 KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                  +  ++K  L    +   E       + LE   L    N            + +
Sbjct: 386 NPFQTQNMLAILKTHLLIPSWYKEEAEYIHDVDELENFVLAHGINHNLWK---KHFDNFV 442

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +         +    +  +   V  +    + I      +         L+ +     
Sbjct: 443 NAEVIRLDKMDDEVAKIDRLRSYLVDKISTFFKIIEQEKDSQKALTIFFEFLTKNGIADR 502

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                         +      E+    L  L    +        +  E+ +++       
Sbjct: 503 LEKWRDEANEAGDLQQAQQ-PEQLWDLLMQLLQDYLAINPE-TFDLNEFFNMLISAFREA 560

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673
                      + +      +   +  + + G      P+      FL+    + L    
Sbjct: 561 NFSQIPSTLDAVNLSEMGMVQTSGYKQVFIIGATANNLPQIQKMPGFLTTENLNQLQNSF 620

Query: 674 -----LKTAEKYIGQAAHD---FEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGG 724
                L+ +++      +      +A     +  +  +   +N     S + QRL   G 
Sbjct: 621 NSESYLEDSQQLNNLDQNYQFGLSLALAQDRVYVSYPVLNASNEELDPSIYYQRLKDYGA 680

Query: 725 TDFFD-NLKKRGQCYL-----------------------DWTRKLDYTTKQPHYKRPKPF 760
             F   +L ++ Q  L                            L  T +Q   K     
Sbjct: 681 QQFVQHDLPEKMQDLLSFITNPDASLGYLTYMNSINSGLAVQELLKITQEQLPQKTKTVL 740

Query: 761 PPLEAQPRTY-----------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
              +   +                   S S+++    + Y  +    LKL     F+ + 
Sbjct: 741 EASDFDNQPENIGQDLASQLYGQNLNSSVSQLETFYENSYEYFLNYGLKLRRR--FENEF 798

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEI------NHLMKQIIDSHFEKENLPPH-----I 852
           D    G  FH     L+KK   ++T            M   + +  + E           
Sbjct: 799 DVIQAGNYFHETFDRLVKKLNKQHTDLADLSSIELEQMLNSVRNVMKDEGKYSQLMNDPF 858

Query: 853 DIIWRHLFH----KISHSFLEHEEKIQSSIEKIFVNIPAKM--AIESIGIH--------- 897
           +            K++H++    ++  + +   +  +   +   I+ + +          
Sbjct: 859 NQYLFKCLDHTTSKVAHNWRRSLKE--TPLRAKYSELSFGLGEKIKGLSLKVPDISGQHK 916

Query: 898 --LTGFADRIDL----LKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS- 948
             L G  DR+DL     K   +  + DYK+             I  Q+      L     
Sbjct: 917 VDLRGKMDRVDLANFNDKDQVLAQVIDYKSSAKKFDLGMFYNGIALQMVSYLDVLTKNDQ 976

Query: 949 -FSQIDCRKVANLFY 962
            F+  D   +   FY
Sbjct: 977 FFAGKDRLSLLGAFY 991


>gi|227878666|ref|ZP_03996581.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus
           JV-V01]
 gi|256850381|ref|ZP_05555809.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus
           MV-1A-US]
 gi|262046471|ref|ZP_06019433.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus
           MV-3A-US]
 gi|312978153|ref|ZP_07789897.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus
           CTV-05]
 gi|227861730|gb|EEJ69334.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus
           JV-V01]
 gi|256712778|gb|EEU27771.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus
           MV-1A-US]
 gi|260573342|gb|EEX29900.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus
           MV-3A-US]
 gi|310894871|gb|EFQ43941.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus
           CTV-05]
          Length = 1159

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 102/975 (10%), Positives = 240/975 (24%), Gaps = 149/975 (15%)

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                 +         L   + +    + LA +I   +++L             ++  + 
Sbjct: 71  SFSRLAWFFLKDAEQGLPNQLDDAASAMLLAHIIENKKDEL-------------TIFENV 117

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                L   L   I  +       +++     +            L+I    + + +   
Sbjct: 118 NVNSGLVNQLYQTILQVYDGNLDLDEISE---DNLDQETKNKLHDLRIIYDAFIKEIA-- 172

Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
              S        +           +        +         +  +       I+    
Sbjct: 173 GKFSTKNEVQLQLNEILAKSKNLKQASFYFCDFSHFSLQETLTIKILMRKAKDVIL---- 228

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
                   + T   +  +            Q ++ +L   L ++   +  +         
Sbjct: 229 -------AFKTRLGEINSSAEEGDYDYV-IQQTIKRL--TLFLQERKMDYVTATFPLNSQ 278

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            +     + L  +T                      V L++AD+   EA  +A  +   +
Sbjct: 279 SNGREILNSLWTETIPKV-------------DELKQVQLVKADSRYAEAYFVARTIYQQV 325

Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              +       ++  +           L +  I         +       ++ SL N   
Sbjct: 326 ALSNYRYHDFLILAPNLKEYETYLTPILRQNQIPFFNDLQQEMKYHPLVVLIESLFNLHE 385

Query: 439 KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                  +  ++K  L    +   E       + LE   L    N            + +
Sbjct: 386 NPFQTQNMLAILKTHLLIPSWYKEEAEYIHDVDELENFVLAHGINHNLWK---KHFDNFV 442

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +         +    +  +   V  +    + I      +         L+ +     
Sbjct: 443 NAEVIRLDKMDDEVAKIDRLRSYLVDKISTFFKIIEQEKDSQKALTIFFEFLTKNGIADR 502

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                         +      E+    L  L    +        +  E+ +++       
Sbjct: 503 LEKWRDEANEAGDLQQAQQ-PEQLWDLLMQLLQDYLAINPE-TFDLNEFFNMLISAFREA 560

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673
                      + +      +   +  + + G      P+      FL+    + L    
Sbjct: 561 NFSQIPSTLDAVNLSEMGMVQTSGYKQVFIIGATANNLPQIQKMPGFLTTENLNQLQNSF 620

Query: 674 -----LKTAEKYIGQAAHD---FEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGG 724
                L+ +++      +      +A     +  +  +   +N     S + QRL   G 
Sbjct: 621 NSESYLEDSQQLNNLDQNYQFGLSLALAQDRVYVSYPVLNASNEELDPSIYYQRLKDYGA 680

Query: 725 TDFFD-NLKKRGQCYL-----------------------DWTRKLDYTTKQPHYKRPKPF 760
             F   +L ++ Q  L                            L  T +Q   K     
Sbjct: 681 QQFVQHDLPEKMQDLLSFITNPDASLGYLTYMNSINSGLAVQELLKITQEQLPQKTKTVL 740

Query: 761 PPLEAQPRTY-----------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
              +   +                   S S+++    + Y  +    LKL     F+ + 
Sbjct: 741 EASDFDNQPENIGQDLASQLYGQNLNSSVSQLETFYENSYEYFLNYGLKLRRR--FENEF 798

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEI------NHLMKQIIDSHFEKENLPPH-----I 852
           D    G  FH     L+KK   ++T            M   + +  + E           
Sbjct: 799 DVIQAGNYFHETFDRLVKKLNKQHTDLADLSSIELEQMLNSVRNVMKDEGKYSQLMNDPF 858

Query: 853 DIIWRHLFH----KISHSFLEHEEKIQSSIEKIFVNIPAKM--AIESIGIH--------- 897
           +            K++H++    ++  + +   +  +   +   I+ + +          
Sbjct: 859 NQYLFKCLDHTTSKVAHNWRRSLKE--TPLRAKYSELSFGLGEKIKGLSLKVPDISGQHK 916

Query: 898 --LTGFADRIDL----LKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS- 948
             L G  DR+DL     K   +  + DYK+             I  Q+      L     
Sbjct: 917 VDLRGKMDRVDLANFNDKDQVLAQVIDYKSSAKKFDLGMFYNGIALQMVSYLDVLTKNDQ 976

Query: 949 -FSQIDCRKVANLFY 962
            F+  D   +   FY
Sbjct: 977 FFAGKDRLSLLGAFY 991


>gi|325198813|gb|ADY94269.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis
           G2136]
          Length = 1033

 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 106/865 (12%), Positives = 214/865 (24%), Gaps = 80/865 (9%)

Query: 53  TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
           ++   + L +      G  + +     SL   +  K    L+       P +       L
Sbjct: 3   SQGMRRYLNTCLARDLGVAANLS---FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRL 59

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
             L      +     +D+       L    +    LA  LADI D       +W D    
Sbjct: 60  LDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQ 119

Query: 173 KNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
                      W             W  R ++    S         +             
Sbjct: 120 GRRLGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPER 168

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
             + G +   P   +L+  ++ H +  +             W  + E +  +        
Sbjct: 169 YFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDL 224

Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
           T   + L   L        D      +  E          + L    +D++N D+   K 
Sbjct: 225 TQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGSRDTLLHALQTDIQNLDMPSEKA 284

Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLE 405
            NI      + ++ A +   E   +   L   L E+        A++T +          
Sbjct: 285 GNINTDDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEA 344

Query: 406 L------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLA 455
           +          +   +S             L+ L + +    +   +  L++        
Sbjct: 345 VFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRF 404

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                +  L     A   V    +       D        +        +P   + + ++
Sbjct: 405 GLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQD 464

Query: 516 DKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                  +       +    L T            +I +W       L+ +   E     
Sbjct: 465 VSAWYADVNQTALFGRFAALLETLSDIVRIWRQPATIGEWVARCRDLLETLFQAEADDQK 524

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
           ++   E         +++ +    +       I  I R +D E+          +     
Sbjct: 525 SVQNLENEWVKWQAETELAQFSRQLP--QQTVIRHIRRFLDSES--EAGFLRGGITFCSM 580

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
           +  R L F  + L GLN+G +P+NT    F           +             E    
Sbjct: 581 VPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALIS 638

Query: 694 TRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY------------ 738
            R  L  +   R+   +     S  L  L+         N ++  Q +            
Sbjct: 639 AREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMTGTNSRQLAQNWIEQHPLQAFSRR 698

Query: 739 ---------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                           D+   L  T + P     +P              E  +   +P 
Sbjct: 699 YFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPV-ENAEPVAEIGQDEFIRFWRNPV 757

Query: 784 AVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
            V+ ++ L        +               I    I+ R      + +    +I    
Sbjct: 758 KVWLQQQLAWSEPHIGEAWEPAEPFEPQHADQIAKTYIEARREGR--DFSQTAARIGAES 815

Query: 843 FEKENLPPHIDIIWRHLFHKISHSF 867
                    +  +W+  F   +   
Sbjct: 816 L---LPSGELGRLWQQDFQTAAKQI 837


>gi|240849707|ref|YP_002971095.1| double-strand break repair helicase AddA [Bartonella grahamii as4aup]
 gi|240266830|gb|ACS50418.1| double-strand break repair helicase AddA [Bartonella grahamii as4aup]
          Length = 1158

 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 86/829 (10%), Positives = 203/829 (24%), Gaps = 111/829 (13%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAG 234
             A     +  K +T                  +             + +      I++  
Sbjct: 340  AAFQLCAVYLKIYTNLKKANGFLDFDDLIERTLHLLQRKGASQWVHYKLDRGLDHILLDE 399

Query: 235  STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNI----- 281
            +  + P   +++  +A           N   +    D       +     ++        
Sbjct: 400  AQDTNPEQWQIIQLLAQEFFSGYSQRTNIRTLFAVGDEKQSIYSFQGAAPENFAENGRII 459

Query: 282  -----TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL-PPD 335
                  ++         YS     D L       +   N        +  + ++      
Sbjct: 460  QKKVQQTNQQFEKIQLHYSFRSTADVLKSVDIVFETPENYKGLSAENTKTVHEAIRVHSP 519

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--------- 386
               +    I +            V  ++   E   A  IA  +   L + +         
Sbjct: 520  GEVVIWDAISQETSEFPHDWHLSVDHLDTP-EVRLAEKIAETIANWLQKGEMLPAKGRLI 578

Query: 387  ---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                   L+         +        I +  +  + L+  +    L +L   + +  D 
Sbjct: 579  RASDIMILVRKRDQFVSALSRAFKHRNIPVAGADRLQLTKHISIRDLMALARFVLQPQDD 638

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
            +++A ++K PL      E Y   A    +L         +     D    +        +
Sbjct: 639  LSLACVLKSPLFALSEEELYQLAAHRTGSLWQSLFTHASSQASFKDAFEKLNHY-RALVD 697

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
               V  + + +   DK    +L     +    L  +     +                 L
Sbjct: 698  KIPVFEFYNHILNNDKGRQKILSRLGSEANDVLDAFMDYTLTIQKTG-----LPGLQAFL 752

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            + +   E                  +    +     ++A  +  +D              
Sbjct: 753  ETLSASEPEIKREFEQNN-----EEIRIMTVHAAKGLEAAIVFLVD-------------- 793

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                    I     +  L    L     N            F +++ +  ++        
Sbjct: 794  ----PGSAIWHPQHAPHLLKVPLNNAKWNGKQAFIWRPNEKFDTKLSKQAISHLKERAEE 849

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                  +         ++    +        S    +L+          +K   +    W
Sbjct: 850  EYRRLLYVGMTRAEDRLFICGYKGQKTQ---SHTWLQLVKKALEPHALAIKDSVEDIAAW 906

Query: 742  -----------------------TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                                      L         + P    PL+    + S     +L
Sbjct: 907  RFCITPPSSVSINPKVPCAECQTLPPLPAFFSHKVPEEPVLPKPLKPSVASLSIEADTEL 966

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
             + P  +    +L               + G + H ++  L    + K      + +  I
Sbjct: 967  SSSPKQLTISPVLGATNTNRAF----SIEYGNIVHRLLQYLPDYPLQKRRDYARNYL-NI 1021

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
              SH+ +      +  +W     KI      + + + S   +  V++   + I      +
Sbjct: 1022 KASHWYESQREDALRHVW-----KILDHV--YLKPLFSEHSRAEVSLMGIVKIRGKEHAI 1074

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKA 946
            +G  DR+ + ++  +   D+KTG  P  +         Q++L    L+A
Sbjct: 1075 SGQIDRLYITQN-SIIFADFKTGTPPENEAAIASHHWLQMALYRKLLQA 1122


>gi|311743792|ref|ZP_07717598.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272]
 gi|311312922|gb|EFQ82833.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272]
          Length = 1047

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 116/1047 (11%), Positives = 256/1047 (24%), Gaps = 148/1047 (14%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL----RSEFIEITGKKSTILPII 78
             A++   +V    ++ ++P     V     T +A  EL    R+             P I
Sbjct: 52   TAVMAARVVWLVGHERVDPE---RVLGLTFTAKAAAELAGRVRASLATALDMGDAGEPTI 108

Query: 79   KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
             +        F   L+  + L   +    R+L  AR   +    L   +          L
Sbjct: 109  ST-----YHAFAGRLIAEHGLRLGLEPDLRVLTDARRHQLVVRVLRR-VDHPLQHVSTHL 162

Query: 139  PISPANAIWLAKNLADII---------DIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
            P    + + L   L++ +         D     E    D     +           + L 
Sbjct: 163  PSVVGDVLALDGQLSEHLVTTEQLRLHDHAVVAEMAAADKPLKLHRDVAATAAKRIE-LS 221

Query: 190  IASKYWTERLVELNASSPVGYQI----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
                 +     E                    E    + G    +++     +  A   L
Sbjct: 222  GLVDRYRAAKAEAGVMDFSDQMAWGTELARLPEVSDDLGGRYDVVLLDEYQDTSVAQRDL 281

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            ++ +        +    D       W      +        T +               +
Sbjct: 282  LAALFQGR----ITAVGDPAQGIYGWRGAATGNLEGFIEQFTPA--------------GV 323

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
            +R     L       +    +   +      S      +         +    +    AD
Sbjct: 324  ERVRPFSLAVSRRCGHRIIDIAGHAARDFYASSDVVQPLRAAPDNPEGEVTVALHRTVAD 383

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
                 A ++  A R        +  ++  +      +   L    + ++I     L    
Sbjct: 384  EIAAVADAVREAGRRHDPPQWNEIGVLVRNGAENAEIVQALRAREVPVEIVGLTGLLAQP 443

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                + ++L  +  +    ++  L+  P  + G         + A  L      +   D 
Sbjct: 444  EVLDVLAVLEVLDDMTANPSMLRLLAGPRWRIG-DRDLALLGRRARRLSESARTREDPDA 502

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
             D+ +++   +             S                  Q +  +  +        
Sbjct: 503  GDVDAVLAHELERATAGVDPTEVVSLAEAVADPGPAPYSPEARQRLGEIAQFLARLRRH- 561

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
             +  + D     V  LQ     +   +      +    ++                 ++ 
Sbjct: 562  AHEPLVDLVHRVVRDLQLDVELDVEGVGTDNLTQLHDAVARYAGDDPHASLGGLMAYLQA 621

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                   +D  T      +++++ +L   +S+ L +D + +  L +GV+P   +++ +  
Sbjct: 622  ERDYADGLDVST----PSEANSVKVLTVHKSKGLEYDEVFVPFLADGVFPSGRSRDRWTG 677

Query: 666  ---------------------------RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
                                          + +   ++  + +  A   F  A    HL 
Sbjct: 678  VARALPVSLRGDGDSLADLTEFTTAGVARYKQESAQESMMEEVRLAYVAFTRARHRLHLS 737

Query: 699  YTRSLRENNIPTIASRWL---QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
              R  R    P   SR+L       V  G +      +      +   +           
Sbjct: 738  GHRWGRTQKRPRGVSRFLADAHEWSVASGCEPEVWSPEPADDEPNPLGETVRHAWPHPVD 797

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD-------- 807
              +P   L A+ R    ++       P        L L      +      +        
Sbjct: 798  GMQPRRELAAEVRRRMAADGPPPDVHPVHADLATELDLLLAEAERVADPVVEVTLPSALS 857

Query: 808  -------------------------------RGTLFHNIITELIKKRINKNTPEINHLMK 836
                                            GT FH  I             + +  + 
Sbjct: 858  ATQAMAWAADADAFARDLARPRPRRPSRAARFGTSFHAWIESTYLPNQQGLLLDPSD-LP 916

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
               D+    +     +                  E    +  E + +     + + +   
Sbjct: 917  GRGDTDISDDADLAAMKA--------------AFEAGPYAGREPVSIEEGFTLHLGAQ-- 960

Query: 897  HLTGFADRID--LLKSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             L G  D +    L  G    ++ D+KT      +        QL++   A        +
Sbjct: 961  RLIGRIDAVFTTTLPDGTDGYEVVDWKTNRAATADP------LQLAVYRLAWAEKHDVPV 1014

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKK 979
            D   V    Y+RL Q  + D +    +
Sbjct: 1015 DRV-VGTFVYVRLDQVVRHDDLPGRPE 1040


>gi|312891088|ref|ZP_07750611.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603]
 gi|311296396|gb|EFQ73542.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603]
          Length = 1053

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 107/1036 (10%), Positives = 264/1036 (25%), Gaps = 129/1036 (12%)

Query: 30   LVENFRYDPLNPLLLA-SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            L             L   +     T      +R    +  G  +  +  I +      E 
Sbjct: 48   LAARIGKILTETDALPHEILCLTYTDAGAVAMRKRLFDFIGPDAYRV-NIYTFHAFCNEV 106

Query: 89   FTADLLLSYNL-NPPVSNIQRLLELARLILIWRN--KLPDIIKDLYPESPLSLPISPANA 145
               +L     +   P+S++   L    L+    N   L     D+Y + P          
Sbjct: 107  IQENLDYFGKMNLEPLSDLDAALLFRELVDDLPNDHVLKRFTGDVYYDVP---------- 156

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNE------------------------------ 175
                  L  +   ++ E      +     E                              
Sbjct: 157  -----RLKSLFSTMKREGWGVAMIQKAVEEYLTDIPFRDEFVYKRANAKAGIKIGDPKQK 211

Query: 176  KYGMWWLLAADFLKIA--SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKG 228
                        L      + +  ++            I +++A  E        +    
Sbjct: 212  DIDAATEKMKSLLAAVSEYQNYDAKMKRDGKYDYDDMIIWVLKAFREDEEILRRYQERYQ 271

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
             I++     +  +   L+  +  +     V    D       +     K+    +++   
Sbjct: 272  YILVDEFQDTSGSQNELLKFMLAYWETPNVFVVGDDDQSIFKFQGANMKNILDFAND--- 328

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS--MVISKSFLPPDTSDMRNTDILE 346
                 Y        L       + + ++S  +   +   +  +  L  +           
Sbjct: 329  -----YVATLNTVVLKHNYRSNQHILDISRVLIDNNNERLTKQLSLDKNLQAAHPRFKDL 383

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKL 404
               P          + E  N  +E + +A+ +   + +  +    A+I  + +    +  
Sbjct: 384  VVEP---------TIQEYANPDQEVVDVAMQIEKLVSKGTEPGEIAVIYRNHSQVDELVH 434

Query: 405  ELTRFGINIDISAGIPLSTTLHSS----ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
             L +  I +     I +           IL  L   +        +   + H    F  P
Sbjct: 435  FLDQKNIAVSTKRKINIIEEPFGEKIINILRYLAMELDSPYSGDELLFEIMH-YDFFNIP 493

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
               +++A   +        K+      L+              H+   ++       +  
Sbjct: 494  PIEIAKASIKVSEDNFGTYKSGLSKTSLRR-------------HIAEMRTPTQTGLFDPV 540

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
              L   +   ++ +        S             T      +     +     + +  
Sbjct: 541  PNL--EMKYLVSNVDYLLKAAVSLTLQQFFQQMIAKTG----ILKYIMQQPNKGWYMQIL 594

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
                + L  +  +      A+ +  ID++ +      +   I   + +  +    S+ L 
Sbjct: 595  TSIFNFLKDESRKKPDISAADFVALIDLMKKNKISLELNQVIFTENGVNFMTAHGSKGLE 654

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIY 699
            F+ + L G ++ +W        F      +        +        +      R  L+ 
Sbjct: 655  FEHVFLIGCSKKIWDGKGRNMGFSYPDTLTQAPADDIAQKEESRRLFYVALTRARQCLMI 714

Query: 700  TRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
            + + ++ N     AS+++  +L                    ++ +     K       K
Sbjct: 715  SYAGKDKNGKDQEASQFIGEILAETHLQVKHPQVGEDAMLDFYSTQFSEADKPKVELIDK 774

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
             +     Q  T S + +   ++ P   Y + ++++               G   H  + +
Sbjct: 775  NYINQLLQGYTLSVTHLSNYLDCPLRFYFQNLIRVP-----SGKSPAATFGQAVHWALNK 829

Query: 819  LIKKRINKNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFH---KISHSFLEHEEKI 874
              +   + N               +  + N        ++       +I   + E   ++
Sbjct: 830  AFRNLKDNNDEFPLTQEFMDHYRWYMRR-NRDSFTKEDYKLRLEYGERILPVYYEQNIEV 888

Query: 875  QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETAQK 931
             +           K  +E  GI + G  D+I+      V++ DYKTG       K     
Sbjct: 889  WNKNAI--TEKAIK-NVEIEGIPIKGNLDKIEFNG-KQVNVVDYKTGKFKNARSKFDRPN 944

Query: 932  LIDP-------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
              DP       Q       +     +  D        ++    + +              
Sbjct: 945  GGDPNGGDYWRQAVFYKILIDHDLTNDWDVIST-QFEFVEPISEGEYHKEKVVITPQDVQ 1003

Query: 985  ELSEKSLKNLIEIVTL 1000
            ++ E+      +I+  
Sbjct: 1004 QVGEQIKTVYQKILNH 1019


>gi|295696732|ref|YP_003589970.1| ATP-dependent nuclease subunit B-like protein [Bacillus tusciae DSM
            2912]
 gi|295412334|gb|ADG06826.1| ATP-dependent nuclease subunit B-like protein [Bacillus tusciae DSM
            2912]
          Length = 1052

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 116/994 (11%), Positives = 256/994 (25%), Gaps = 176/994 (17%)

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
               + P     + +  A +I  +   E   E L     E              +      
Sbjct: 89   GPALDPLAWPGVRRKAARLIQRLREAEVPPEILEEAAEELPRREAGRVRWLAGLLRAVVE 148

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMK---GTKGPIIIAGSTGSIPATARLMSTVANHP 253
             + +   A+              E  +         +++ G +    A  R ++ +    
Sbjct: 149  AQAMRAGAADEAEMLGRAAALLGERPLPEWLPGVRRVVVYGFSRLSAAAVRFVAAIRGVE 208

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
               + LP ++                       + S   Q    +LL         ++  
Sbjct: 209  AVEVCLPPVE------------------IPGVRSESGPLQRGGWRLLTRRG---FAMQPG 247

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
            GNV  +   R +  S +F                  P+    ++ V           A  
Sbjct: 248  GNVLPQGGRRPVAASLAF------------------PDEASQWAGV-----------AGW 278

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTS 432
            +A  L   L  + ++ A++T             L   GI++      P +       + S
Sbjct: 279  VADRLAEGL--SPRRIAVVTDRPPTPDSALVRALADRGISLAEPVVRPGTAAPLIQYVFS 336

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            LL     L    A+ T+     A  G P  ++   +    L     +     +       
Sbjct: 337  LLELAQGLWSRAALFTVASDVYAPDGRPRHWVLARRVDPRLERAGADGWMAGVRRALEAE 396

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
             D +  ++              E +++ + L     +      T   ++ +      + +
Sbjct: 397  TDLLPGERR-------------ELEDVLIWLAQVRDRVAGMPETGSLSEWADALEGLLEE 443

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE----WIDI 608
                     +                E    L ++  +  ET S +          W   
Sbjct: 444  MEVERALRRRARKAGSEEWAGIRQDLEAYAVLRAMLREWRETDSWVGWPGRCSRGEWARW 503

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            +   ++G  +  +  +   + ++    + +L+ +  ++  +NEG+WP    +      + 
Sbjct: 504  LREELEGRRLIVRPGQEDGIRVVSPETAWVLDLEAAVVPEVNEGIWPPPEREEGLAEVLY 563

Query: 669  ----QSDLNLKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIPTIASRWLQR---- 718
                          +   Q   +      T    +  T    E  +P+     L R    
Sbjct: 564  DVLKLRGYEWPRPAELRAQHEENLLRLLATPGIQVALTYVEAEGKLPSRILEQLWRSGQC 623

Query: 719  --------LLVLGGTDFFDNLKKRGQC------YLDWTR--KLDYTTKQPHYKRPKPFPP 762
                      V G      + ++ G        +  W     LD     P         P
Sbjct: 624  LPGGGQELESVAGLPQESGDPREAGPPFAHVALWRAWEERMALDRVDGHPFDGPVDDTGP 683

Query: 763  LEAQPRTY-----------------------------------------SFSEIKQLIND 781
            L  + R                                           S S        
Sbjct: 684  LSGRWRRLAAKAMIEKLREGPEFSPWEGRLSSDFAQTEFGQRFSEDRVYSASMFNDYGTC 743

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN----------KNTPEI 831
            P+    RR+ K++     ++  D  + G L+H +++ L ++  +           +    
Sbjct: 744  PFRFLLRRVWKIEVGRGAREPLDALEAGLLYHRVLSGLFREVRDLAESGDGNLWLDIDRA 803

Query: 832  NHLMKQIIDSHFEKENLPPHIDI-----IWRHLFHKISHSFLEHEE--KIQSSIEKIFVN 884
              L+++      +       +       + R         ++ ++   +  S +   +  
Sbjct: 804  LGLLERRWGEEVQALEERLGLKEFPTWSLQRERMRNRIWQWVAYDWSQRRGSGLRPRYFE 863

Query: 885  IPAKMA------------IESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNPKKETA 929
                              I   G+   G  DRID    G   + DYK    G    K   
Sbjct: 864  WAFGGEDDSSDPASSPTPIAVEGLLFQGRVDRIDADAQGRFIVYDYKRTTGGGRHGKAAI 923

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSE 988
             K ID QL L    ++   +      +     Y  L +   + + +      +       
Sbjct: 924  AKGIDVQLPLYMEIVRQALYPD---GEPLGAAYYGLERPDRQKEGLWRKGADHGLGPRVG 980

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022
               +    ++    +    +   +R  +      
Sbjct: 981  LGDEEWQALIDRALDYILEYHGRMRAGDYPVAPG 1014


>gi|254427543|ref|ZP_05041250.1| exodeoxyribonuclease V, gamma subunit [Alcanivorax sp. DG881]
 gi|196193712|gb|EDX88671.1| exodeoxyribonuclease V, gamma subunit [Alcanivorax sp. DG881]
          Length = 1134

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 92/859 (10%), Positives = 229/859 (26%), Gaps = 61/859 (7%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L   + +  + +PL P  L + T  V +    Q L+ +  +  G  +     + +     
Sbjct: 18  LTELVADWLQREPLPP--LETETFLVQSNGMAQWLKLQLADALGISAGFQFQMPA----R 71

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                   +L  +  P  S   +   L RL  +    L +          L+  +     
Sbjct: 72  FLWGAYRTVLGEDQVPRTSPFDKSRLLWRLYRLLPALLNNEHFGPL-RHFLADDVDGRKR 130

Query: 146 IWLAKNLADIIDIIETEEKKW--------EDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
             LA+ LAD+ D  +     W        + L   ++      +  +  +     +    
Sbjct: 131 HQLAERLADLFDAYQMYRADWLADWESSNDRLRKAQDRDTFDDFPASQLWQAHLWRALLT 190

Query: 198 RLVE--LNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHP 253
            + +     S    ++  +     +           +II G +         ++ ++ H 
Sbjct: 191 DMDDSKQGLSRSAIHRDFMAALTQQQDTPPPGLPRRLIIFGISALPQQALEALAALSQHC 250

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD-IKREDVKR 312
              +++     H    I          + +     +  P+  +  LL       R+ +  
Sbjct: 251 QILMLVQNPCQHYWADIVEDKQLLRRQLDNRKRHLTALPENRVNPLLAAWGKQGRDFIGL 310

Query: 313 LGNVSNEMYGRSMVISKSFL-----------PPDTSDMRNTDILENKIPNIQKCFSDVAL 361
           L +  +    RS   ++  L                 +    +         +  S +  
Sbjct: 311 LYDHDDPDSYRSAFQNQIDLFESREPHTLLQQLQQDILDLEPLPAPDRRPPLEMDSSLQF 370

Query: 362 IEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL-------TRFG 410
               + + E   +   L            +   ++  D          +           
Sbjct: 371 RIGHSAQREVEILQDELLDRFSNDPTLQPRDVIVMVPDIEAYAPHIDAVFGRLERDDPRY 430

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF--PEKYLSRAK 468
           +   +S     + +  +  + SLL+          I  L+  P  +  F   E  L +  
Sbjct: 431 LPYTLSDRSAGAASPLAQAVESLLHLPQWRFTATDILDLLDVPAVRERFGIDEGDLPQLA 490

Query: 469 NALELVALRGNKNSYDIMDLK------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
             ++   +R   NS     L       +     +        +    + +  E  +    
Sbjct: 491 RWIDQARIRWGLNSPQRKTLDVPDFEQNSWAFGLKRMLAGYLLGDGPAWMGIEPLDEVAG 550

Query: 523 LVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
           L   +   +   L T + +   +  + S   W +     L ++          L      
Sbjct: 551 LGAELAGRLSRLLDTLEQHWQQSRTDASARQWQQRFTQLLDDLFAPGDEADQTLDAG-LR 609

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
             L+   +   E               +   ++ E++  +      + +   +  R + F
Sbjct: 610 DALNDWLAACAEADFDSPLPLTVARRPLLDALNAESLSQRFMAG-RINVCTLMPMRAIPF 668

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYT 700
             + L G+ +G +P+      F       +       +         E     R  L  +
Sbjct: 669 RHVCLLGMKDGDYPRQQQPMDFDLMRQWGNYRPGDRSRRDDDRYLFLEALLSARDSLYIS 728

Query: 701 RSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
            + R   +N     S  + +L       +  +L +             ++ +   +    
Sbjct: 729 WTGRNVRDNSERPPSVLVAQLRDHINQRWRTDLGEPVDALTVSHPLQPFSARYFFHSDQD 788

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
             P               + ++D  A   R    L  +    +       G      +  
Sbjct: 789 AVPDTSLHTYA----NEWRALHDGQAHKVRNDQPLPPLE-NDEPITCAALGRFLKQPVAH 843

Query: 819 LIKKRINKNTPEINHLMKQ 837
             ++R+     +   ++  
Sbjct: 844 FFEQRLKARLKQQRQVLDD 862


>gi|295696731|ref|YP_003589969.1| Exodeoxyribonuclease V [Bacillus tusciae DSM 2912]
 gi|295412333|gb|ADG06825.1| Exodeoxyribonuclease V [Bacillus tusciae DSM 2912]
          Length = 1259

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 103/954 (10%), Positives = 233/954 (24%), Gaps = 148/954 (15%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK----GTKGPIIIAGSTGSIPA 241
               +  ++ + ++     A      Q+  +R   +  ++     +   +++     +   
Sbjct: 323  RLWERVAQRYEKKKAGHRALDYTDLQLRAVRLLEDSEVRRHWTASLRYVMVDEFQDTNRL 382

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
             ARL+  +     GA +    D       +          T            SL     
Sbjct: 383  QARLVGLL--LDGGARLFVVGDGKQSIYRFRGADVSVFVETRRQVQEKGGVAVSLRHNFR 440

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                          +         V+ +S    + +        E  +P  +K    V +
Sbjct: 441  SQG---------PILDFVNRVLGPVMGESANGENAAPPSFKIEYEPLVPTREKMGGSVEI 491

Query: 362  IEADNER-----EEAISIAIALRMSLDENKK-------------KSALITADRNLARRVK 403
            +  D+E       EA   A  ++  ++                   A++ A        +
Sbjct: 492  VHIDSEGLAGRLVEATEAARWIQRFVESGGTVGGESGLRPARYGDVAMLLAVSTHLPVYE 551

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
            L L   G+   I+             L  +L  ++   D +A+   ++ PL         
Sbjct: 552  LALQEAGVPYRIAGSRNFFRRQEVRDLIQVLRWVYDPGDEVAMIGALRSPLFGMSDDGLT 611

Query: 464  LSRAK------NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
            +            L   +            L     DR A +     V  W+ R + E  
Sbjct: 612  IIALATGRGKERGLLAFSADPLGWVDGSRKLPLSPWDRRAAEDAARQVAKWRRRAAWESA 671

Query: 518  ELA-VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                  +VD      T L T    + +      I    +       ++          + 
Sbjct: 672  GALVERIVDETGIVPTLLQTSGGRQKAENVRRFIEMAYEREAEGRVSLSAFLSWIQWQIE 731

Query: 577  FEEEGKTLS------SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLF 629
             + + +         ++    +     ++   +   D+         +    E  +  + 
Sbjct: 732  DDTDEEEARVVDGDDAVTVMTVHQSKGLEFPVVVLPDLARPFRSRREMWCMDEDGALAVK 791

Query: 630  ILGTLESRLLNFDTLILGG---------LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
              G  E     +   +  G         + +       A++       +   + K     
Sbjct: 792  WPGVGEYAGFGWYERVREGEARKDREEEMRKFYVALTRARDHLALFGTRKLPSKKKDPLT 851

Query: 681  IGQAAHDFEMANGT-----------------RHLIYTRSLRENNI--------PTIASRW 715
            +  A   F+    +                   +I+TR    +          P +    
Sbjct: 852  VDTARSWFDWLICSLAQGDLSGAEELVGRAGEGVIWTRVAAPDGAAGSIDAARPQLKDSG 911

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT---------------TKQPHYKRPKPF 760
            +         +  ++     Q      +                     ++     P   
Sbjct: 912  ISEERPGKSPEVIESPDSGAQTADGQAKGAAARLIHHILTLGNTEGGWDREDFVITPGGG 971

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK------------------- 801
            P    +  T S S + +    P   Y    L+L  +                        
Sbjct: 972  PLGRPEMATVSASRLLEYDICPRRYYYHWTLRLPALDQAFDTASGDGLGEQEIPDPLMGG 1031

Query: 802  ----------DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
                            RGT+ H +               I   + Q+++       L   
Sbjct: 1032 DQGPAEMERVGWSPLLRGTVVHRVCERWTGAEP------ILDRLDQVLEEFRLTGPLGRR 1085

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLK 909
                 R    + +        K  +  + ++   P  + ++       L G  D+I +  
Sbjct: 1086 AREEVREELLRYAD---GELSKRLNRAQHVWSEWPFYLRLQGAQRVWDLHGQVDKIFV-A 1141

Query: 910  SGFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
             G   + D+KT                 Q+ L A A++             +  Y+    
Sbjct: 1142 DGRTVVVDFKTNRTAPEGVGALVDHYRLQVQLYAWAVERN-------LAPVDEAYLYFTD 1194

Query: 968  KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
              ++  +  D       E  E+    L  +    +    PF   L +      +
Sbjct: 1195 PGELAPVPVDPGNVR--EALERVDARLNHLSREWRLEAYPFTEDLSMCRVCPYR 1246


>gi|311898256|dbj|BAJ30664.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054]
          Length = 1073

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 102/1045 (9%), Positives = 240/1045 (22%), Gaps = 150/1045 (14%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV---VEEKFTADLLLSYNLNPP 102
             V     T +A  EL         +         +LGD        F   LL  + L   
Sbjct: 67   QVLGLTFTNKAAGELAERVRAALLRAGVRAEDEDALGDPQISTYHAFAGTLLKEHGLRLG 126

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +    RLL  A    +    L               P        L   L  +   +   
Sbjct: 127  IEPDVRLLADATRFQLAARVLRQARGPF--------PALTGTFSALVAELVALDSELAEH 178

Query: 163  EKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYWTERLVELNASSP 207
              +   L     E                           L    + +  R  +L     
Sbjct: 179  LVEPARLREHDEELLDQLAGVKLTNDDLRAVPKAARGRQELLRLVEDYRARKQKLGLLDF 238

Query: 208  VGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLP 260
                    ++A  R E   L++     +++     +  A   +++ +       G  V  
Sbjct: 239  GDQIAASARLAQQRPEVGRLLREQYRVVLLDEYQDTSVAQRLMLAGLFGGESGAGHPVTA 298

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              D       W   +  + +    +   +         L                 S   
Sbjct: 299  VGDPCQAIYGWRGASVANLDDFPRHFPLADGGPAHRFAL-----------------SENR 341

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
                 ++  +          +  +   +     +      +        E   +A ++  
Sbjct: 342  RSGGRLLDLANRLATPLRAMHEGVEALRPAPGAERDGSARVALLPTHAAEIDWLADSIAH 401

Query: 381  SLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             +       + A++         +   L    + +++     L      + L ++   + 
Sbjct: 402  LVRTGTAPGRIAVLCRAGGSFPDIHAALVERKVPVEVVGLGGLLQLPEVADLVAVCEVLQ 461

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                  A+  L+  P  + G  +  L   + A  +   R  +       +       + +
Sbjct: 462  DPTANAALVRLLIGPRWRTGPRDLALLGRRAAELVRTARPGEQDALSAAVAETDPTEVVS 521

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
              +         +  +        +                          +    ++  
Sbjct: 522  LADALETFVDAEQPDDLPFSPEARV------RFARFAREIRELRRALAEPLMDVLHRVLT 575

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                 V L            E   +   + +   +        A        +  +    
Sbjct: 576  ATGLEVELSASPLALAARRRETLHSFLDIAASFADLDGDPGLAAFLGFLRAAQEYERGLD 635

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF------LSRVMQSDL 672
                    T+ +L   +S+ L +D + + GL +G +P    ++ +      L   ++ D 
Sbjct: 636  AGLPGGEDTVKVLTAHKSKGLEWDVVAVPGLVKGAFPSKKGRDSWTSTRKVLPHALRGDA 695

Query: 673  NLKTAE------------------KYIGQAAHDFEMANGTRHLIY---TRSLRENNIPTI 711
                A+                    + +    +      R L+                
Sbjct: 696  ATLPADPAWDAKGLGRFKQEMTEHAGVEELRLGYVAFTRPRTLLLASGHWWGPTQKTRRG 755

Query: 712  ASRWLQRLLVL------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
             S +L  L         G  + +     + +        ++     P     +      A
Sbjct: 756  PSDFLTALREHCERPGNGEIEHWAEPPGKDEKNPALDVSVETPWPLPLDPDAQRARRRVA 815

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIP-----HFKKDPDRTDRGTLFHNIITELI 820
            Q   +  +       +P AV  +R+L              +   RT R       ++   
Sbjct: 816  QVVRHRLAGAPAPEGEPMAVEDQRLLASWDRDLTALLGELERSRRTTRDVELPASLSATQ 875

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH---------------------- 858
              R+  +       + + +                W                        
Sbjct: 876  LMRLAADPDGFARDLARPMPRPPAPAARRGTRFHAWVQSRYDQPLLLGPEALPGLDEEEI 935

Query: 859  ----LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG--- 911
                   ++  +FL      +       V  P ++ +      + G  D +     G   
Sbjct: 936  EDERDLERLKDAFLRGPYARR---TPYAVEAPFQLVLAGR--VVRGRIDAVYRAAEGGAG 990

Query: 912  -------------FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
                           ++ D+KTG              QL++   A    +   ++    A
Sbjct: 991  GAGGAGGAGAGAPRYEVVDWKTGR------EDSGDPLQLAVYRLAWAEQAGVAVEEV-AA 1043

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSA 983
            +  Y+R  +      +   K+    
Sbjct: 1044 SFCYVRSGRVETPSGLPGRKELSDL 1068


>gi|319947957|ref|ZP_08022137.1| ATP-dependent nuclease subunit B-like protein [Dietzia cinnamea P4]
 gi|319438385|gb|EFV93325.1| ATP-dependent nuclease subunit B-like protein [Dietzia cinnamea P4]
          Length = 1005

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 103/886 (11%), Positives = 226/886 (25%), Gaps = 132/886 (14%)

Query: 213  ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
             L  A  + L         +A    +  A AR    +     G++              +
Sbjct: 105  LLAAAVDKALDADPGRLAAVAAEPVTGQAVARACLRLGTVEPGSV--------AAETPLH 156

Query: 273  TITEKSTNITSSNTTYSTHPQY-SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
            +   +        T  + + QY ++   L+ LD     V            R  V     
Sbjct: 157  SEVLRLAGEAHEMTGGAYYTQYEAVTTALERLDDLGRVVLAAPLRGTHAERRLRVALSER 216

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKS 389
                 +   +  +     P      +   ++ A +  +E  ++   +R  L E     + 
Sbjct: 217  GVTPVAGTGSDHLASAAEPASADAVTGTHVLHASDSDDEVRAVVRFVRSRLAEGVPGHRI 276

Query: 390  ALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
             +     +   R+        GI +   +   L  +     L  LL     +     + +
Sbjct: 277  GVYYPSPDPYLRLLHRAFAEAGIAVYGPSDSTLGRSPAGRSLVRLLRLDTSMMPRAELLS 336

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            ++                ++    L   R         D    + + + T+   +     
Sbjct: 337  IIAEGSVTPLDDSGAAVSSRRVESLTRTRFPVIGGGDWD---RLDEHLRTEPEASGESEV 393

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                        + L+  I   +  +   +T   +      +                  
Sbjct: 394  LGESDRAAASALLRLIRLIRSGLAAVDAARTWTEAADAVRGL------------------ 435

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                       +   + ++   + +  +   A   + +                E+ + +
Sbjct: 436  --VTAAFRQGPDRAAVLAVVGALADLDAIAPAITRDRVAGAVTARLDPVGDRVGEEGAGV 493

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +    ++   + DT+ + G+ EG+ P   A +P L        + +  ++         
Sbjct: 494  ALGPIDDAVGRDLDTVCVVGMAEGLLPVLHAPDPLLPEGSVEPPSAEVLDERYRVLQLAL 553

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ------------ 736
               +  R   + R         I SRWL   L           + +              
Sbjct: 554  AAGSERRLCSFPRGSMRGGGDRIPSRWLLPTLSRLVGSPVHATRWQEDVAGCAAVIGVSS 613

Query: 737  ----------------------CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------ 768
                                     +       T                 + +      
Sbjct: 614  FVDGVLAPPVALGTDPATRTELRLRNLAAGGWRTRPDAPALLVAAHEMRRDRRQGRFTRF 673

Query: 769  ----------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP--DRTDRGT 810
                              S + ++     PY  +   +L++  +     D   D  D G 
Sbjct: 674  TGDVSSAADLLTVLEQPLSPTRLEDWAQSPYLFFLSTVLRVRTLDDPAADIEMDLRDYGD 733

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE-NLPPHIDIIWRHLFHKIS----- 864
            L H I+   +  RI   +     L+   +    E      P +          +      
Sbjct: 734  LVHAILQRYVSARIESGSGPDRDLLMAALRHECEAAIAASPGLVASLWRRREMMLAAELD 793

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH----------------LTGFADRIDLL 908
              F E      +        +    +     +                 L G  DR+D+ 
Sbjct: 794  RWFAEDSADFDAGWRPAATELGFGRSDGDGAVVEIPFEVSTSTGTATVLLAGSIDRLDVR 853

Query: 909  KSGFVDITDYKTGDNPKKETAQKLIDP-------QLSLEAAALKAGSFSQIDCRKVANLF 961
              G   +TDYKTG  P+ E      DP       QL L      A +        V+   
Sbjct: 854  A-GTQRVTDYKTGKPPEAEARPTADDPTLRGTRFQLPLY-----AAAAQSAGRAPVSGAR 907

Query: 962  YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
            Y    ++ + + I+ D      +++ ++  +++  ++  LQ G  P
Sbjct: 908  YWYCTERGEFEQISLDI----TEDVMDRVREDVGHLIDALQRGWFP 949


>gi|190889666|ref|YP_001976208.1| ATP-dependent exonuclease V protein, nuclease and helicase domains
            [Rhizobium etli CIAT 652]
 gi|190694945|gb|ACE89030.1| probable ATP-dependent exonuclease V protein, nuclease and helicase
            domains [Rhizobium etli CIAT 652]
          Length = 1183

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 96/818 (11%), Positives = 214/818 (26%), Gaps = 86/818 (10%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIA 233
              A       +  + E   + +                +  +              I++ 
Sbjct: 360  QAALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGIDHILVD 419

Query: 234  GSTGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
             +  + P    ++ ++A          P    +    D       +     +  +  S  
Sbjct: 420  EAQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSFQGARPERFSEESDR 479

Query: 286  TTYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL--P 333
            T                  S     D L+   E  +   N          V+ +S     
Sbjct: 480  TRRRVSDSGQSFSSVRLPLSFRSTADVLEAVDEIFRTADNARGLSAVGEPVVHRSSRIGH 539

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------------RM 380
            P   D+ +    E  +          A  E+      A  IA ++             + 
Sbjct: 540  PGAVDLWDMVAPEAAVKEEDWTAPFDATPESAPAAILARRIAHSIGALVGRETIVDKGKE 599

Query: 381  SLDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
             L E      L+         +   L  R  I +  +  + L++ +    L +L   +  
Sbjct: 600  RLIEAGDILVLVRKRDAFVNALTRALKRRGDIPVAGADRLVLTSHIAVQDLLALGRFLLL 659

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
              D +++A ++K PL      + +   A       A    +              R A +
Sbjct: 660  PEDDLSLAAVLKSPLFDLSEEDIFAIAALRGDNESAWSHLRKF----AADGNERFRAAVE 715

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
            K    +   ++    +     +       Q +  L T  ++        ++   +     
Sbjct: 716  KLELFLRQSKNLSVHDFYARLLGSHGGRRQFLARLGTEVSDILDEFLTFTLDHESSGLPG 775

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                +   E         +++G+    +    +     ++A  +  +D       G +  
Sbjct: 776  LQSFISTLELEAPEVKREQDKGRNEVRIM--TVHASKGLEAPIVFLVD-------GGSKA 826

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                    L ++ T          + +  L   +   + A+   L+      L      +
Sbjct: 827  FTHTHLPKLRLIETEPDEPPMPAWVPVADLANSLTQNDAARIQILAEEEYRRLLYVAMTR 886

Query: 680  YIGQAAHDFEMANG----TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
               +              T H++ + +L E +    A+ +        G  +     +R 
Sbjct: 887  AADRLVVCGYRGVRVNNDTWHMMISTALSEGHPHVEAASFSDPDGEWPGIKWRVPRVERS 946

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
               ++ +               +P PP    PR  S S    +I+            L  
Sbjct: 947  FERINRSEA-RDNEISLPEGLLRPLPPQAELPRPLSPSGAGTIID-------EDEGGLVV 998

Query: 796  IPHFKKDPDRTDR----GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
            +     +   +DR    G L H ++  L      +         ++              
Sbjct: 999  VSPLFSEKQGSDRSLEKGRLLHRMLQALPDIPPEERPGAAQRYAERAAR-------FWSE 1051

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLK 909
                 R          L+ ++      E+    +     + ++     ++G  DR+ +L 
Sbjct: 1052 A---ERRKLVDSVLKLLDEKDLQPVLGEQARPEVSIMGTLTLDGRRYAVSGRIDRLAVLA 1108

Query: 910  SGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945
               V I DYKT   P             QL++    L 
Sbjct: 1109 D-RVVILDYKTNRVPPATEEAIPFAHRAQLAIYREILA 1145


>gi|42524525|ref|NP_969905.1| putative exonuclease [Bdellovibrio bacteriovorus HD100]
 gi|39576734|emb|CAE80898.1| putative exonuclease [Bdellovibrio bacteriovorus HD100]
          Length = 907

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/489 (11%), Positives = 134/489 (27%), Gaps = 51/489 (10%)

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
               +    +       EW+  +  ++  +    +  +   + +   + +        I  
Sbjct: 418  RELLQNAVAGTSLTWKEWLSYLESIVAAKEYTLEKGEPRGIMVTKLMSAHSEKARRRIFV 477

Query: 648  GLNEGVWPKNTA-----KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
            GL +             ++ F              +  +         A+    L    +
Sbjct: 478  GLTDEALKGRNKTQLSGQDYFELAKDIGFYLDNPDQSDLEFELRLLAEADSDEDLYCFGA 537

Query: 703  LRENNIPTIASRWLQRLLVLGG----------TDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
               +      + +   L                +   + ++  +  L   ++L       
Sbjct: 538  TDLSGSLCSPATFWMSLQGEHEKLTVPLETRWDELQHSTQRGERPLLAGRKELVEQRILQ 597

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
               +         +    S S ++  +  P+   A+R  KL  +P    D D   RG L 
Sbjct: 598  DLGKVPFATITSPELPRISASAVESFLECPFIFAAQRYFKLKDLPDIDLDVDHRTRGQLA 657

Query: 813  HNIITELI-KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
            H I  +L  +        E    + + +    +       +    +    ++   FL+ E
Sbjct: 658  HAIFEKLTIEPMRFDWKVEELDQLLETVRVEKKLVFADERLWTPLKKKHIQLGLRFLDFE 717

Query: 872  EKIQSSI---EKIFVNIPAKMAIESIG-----------IHLTGFADRIDLLKSGFVDITD 917
            ++ +        I      +  ++                ++G  DRID      + + D
Sbjct: 718  KRWREEFKKTRTIGREKRFEFYLDPQSGDISTEARDNCFRISGQIDRIDSDGGKQLVVVD 777

Query: 918  YKTGD---NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR---------- 964
            YK+     +      +   + QL      L+ G    +    +   +Y+           
Sbjct: 778  YKSSSGGISAHGSWLKNH-ELQLLFYMWVLEKGLVQDVQGEVIGLFYYVFRNFERKGFKV 836

Query: 965  --LKQKFKIDCITNDKKK--YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
              L           DK     + +    +  + L+  +  ++NGE    +      K+  
Sbjct: 837  DDLAGVLYPANKRKDKNATFEAKERYLTEFSQILMTTLGRIKNGEC--DAKPA-DFKTCT 893

Query: 1021 QSEYDHLAR 1029
              E+    R
Sbjct: 894  SCEWRRQCR 902


>gi|260440049|ref|ZP_05793865.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae DGI2]
 gi|291043336|ref|ZP_06569059.1| exodeoxyribonuclease V [Neisseria gonorrhoeae DGI2]
 gi|291012942|gb|EFE04925.1| exodeoxyribonuclease V [Neisseria gonorrhoeae DGI2]
          Length = 1068

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 98/876 (11%), Positives = 217/876 (24%), Gaps = 69/876 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W                R ++    S         +  A
Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKLW-----------RYLDDGRQSAPHRVALWEKLLA 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N  +    + ++      + ++ A +   E   +   L   L E+        A++T +
Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L  + + +    +   +  L
Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D                 +
Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGAMRGGTDQLFTWKQAADRMVLGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +       +    L T            ++ +W          
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLPDR 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +          +   E         +++ +    +       I  I R +D E+      
Sbjct: 551 LFEAGADDQKAVQNLENEWVKWQAETELAQFSGQLP--PHTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                E     R  L  +   R+   +     S  L  L+           ++  Q +++
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIE 724

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                        Y +           RT   + + Q    P   + + +   + +    
Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPVENAEPVAEIG 781

Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
           +D                  +  +     ++      I ++    E   P          
Sbjct: 782 QDE------------FIRFWRNPVKVWLQQLAWSEPHIGEAWEPAEPFEPQH-------A 822

Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
            +I+ +++    +      +    I A+  + S  +
Sbjct: 823 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 857


>gi|42519129|ref|NP_965059.1| hypothetical protein LJ1204 [Lactobacillus johnsonii NCC 533]
 gi|81667804|sp|Q74JA5|ADDB_LACJO RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|41583416|gb|AAS09025.1| hypothetical protein LJ_1204 [Lactobacillus johnsonii NCC 533]
          Length = 1158

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 110/1031 (10%), Positives = 257/1031 (24%), Gaps = 170/1031 (16%)

Query: 46  SVTIYVPTK-------RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98
            V I VP         RA+ +L              L  I S   +           +  
Sbjct: 32  DVFIIVPNHIKFTTEVRALSKLS-VLTNKKQVAVNKL-HILSFSRLAWYFLR---DEAIK 86

Query: 99  LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           L   + +   ++ L +++   +++L                         +  L  + + 
Sbjct: 87  LPQILDDAASVMLLEQIVKDHQDELKLFQNQTQVT---------------SGALRQMYEA 131

Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
           I +      +L  +  +K           L+I    + ERL E  A+        L+   
Sbjct: 132 ILSVRAGNIELDNIDEKKLNEETSYKIHDLRIIYDEFIERLSEKFAT--KDEMQLLLNQF 189

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                  +      +  +         +  ++                       +  K+
Sbjct: 190 LAKSNNLSTMEFYFSDFSHFSLQELTSVRLISKKAKNTT----------------LAFKT 233

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 N        Y + + +  L     +        +       +   S        
Sbjct: 234 KIGKIDNNAEPGDYDYVVQRTIGQL-----EHFWQNQQLDYQTQEYPLTQTSPSSLLNGV 288

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD 395
              T   + ++         +  ++AD+   EA  +A  +   +   +   +   ++  +
Sbjct: 289 WTKTSGFDERLSKF------LQPVKADSRYAEAYFVARTIYQQVALNNYRYQDFLVLAPN 342

Query: 396 RNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
            +         L +  I         +        + +L     +      +  L+K  L
Sbjct: 343 LSEYETYLTPILRQNQIPFFNDLQREMKYHPLVVAVENLQQIFKRGFQTDNVIALMKTQL 402

Query: 455 A--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
               +           + LE   L                   + +  +   +   +S  
Sbjct: 403 FIPDWYKNSARYQNDVDLLENFVLAHGIKGKLWT-------KSLKSFVDADVIALDKSEK 455

Query: 513 SEEDKELAVL-LVDHILQCITPLVTYKTNKNSTCGNLSIS--DWTKLTVTCLQNVCLDEH 569
             ED +      +D + +    L   +  +       +    +     +   +    D  
Sbjct: 456 EVEDLDRLRDYFIDALTKFFEQLDKEEDPQAGVTVFWNFLIKNRVAKRLESWRKEANDTG 515

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                   E+   TL+ L    +      K +  ++ D++                  + 
Sbjct: 516 DLQLAQQPEQVWSTLTDLLKDYL--LVANKFSVDQFFDLLISGFSEANFSQIPSTLDAVN 573

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYI 681
           I      +   +  + + G      P+      F S      LN        L+  +K  
Sbjct: 574 ISELGMVQGQGYKQVFIIGATSTNLPQIEKIPGFFSSENLEQLNEGNEANGYLEDQQKIN 633

Query: 682 GQAAHDF---EMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKR--- 734
               +      ++  +  +  +  +    N     S + ++LL L   D F         
Sbjct: 634 NLDQNYQFGNALSLASDKIYISYPVINTANEQLEPSIFYKQLLKLTRADEFAQHDLPQNN 693

Query: 735 ---------GQCYLDWTRKLDYTTKQ-----------------------------PHYKR 756
                     +  L +   L                                   P    
Sbjct: 694 GEVLTFITNPEASLGYLTYLKNKAATDVDSLLKMTEEKIGEVAKNVLEGSSFKNIPQDLS 753

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
           P+    L       S S+++    + +  +    L L     F+ + D    G  +H   
Sbjct: 754 PELAQQLYGDRIETSVSQLETYYQNSFEYFLNYGLHLKKR--FENELDVIQAGNYYHETF 811

Query: 817 TELIKKRIN------KNTPEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISH 865
             L+K+           T E    +   +    ++     + L    +    H   + + 
Sbjct: 812 DYLVKRIKEKKLNFADLTEEKLGELLIEVREELKEKGRYRQLLNDPFNKYLFHKLDQTTA 871

Query: 866 SFLEHEEKIQSS--IEKIFVNIPAK--MAIESIG------------IHLTGFADRIDLLK 909
           +   +     +       +  +       +  +             + L G  DR+DL +
Sbjct: 872 NVAHYWHSNVNKTTFRPQYSELSFGKNQKVSGLSYSWKDDNNKKKIVDLRGKMDRVDLAQ 931

Query: 910 -SGFVD--ITDYKTGDNPKKETAQKLI-----DPQLSLEAAALKAGS--FSQIDCRKVAN 959
            +  V   + DYK+      +     +       Q+      LK  +  F+Q     V  
Sbjct: 932 VNDRVLGEVIDYKS----SAKKFDLGLFANGISMQMISYLEVLKNNNKFFAQGKDLDVLG 987

Query: 960 LFYIRLKQKFK 970
            FY  +    +
Sbjct: 988 AFYQNITSSLE 998


>gi|223039063|ref|ZP_03609354.1| conserved hypothetical protein [Campylobacter rectus RM3267]
 gi|222879702|gb|EEF14792.1| conserved hypothetical protein [Campylobacter rectus RM3267]
          Length = 863

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 92/656 (14%), Positives = 191/656 (29%), Gaps = 79/656 (12%)

Query: 361 LIEADNEREEAISIAIALRMSLDE-----NKKKSALITADRNLARRVKLELTRFGINIDI 415
           L+   +    ++  A A+  + +        +  A+I  D + A  ++  L   G   + 
Sbjct: 240 LVLKRSFSARSLQAAYAMAKASEFVAGGIKPENIAVILPDESFAEILR--LHDRGKMFNF 297

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR--AKNALEL 473
           + G   + T    IL  ++ AI           L +   A F   E  L      + L  
Sbjct: 298 AMGESFTRTRFFQILKCIVTAINDKIR----VNLSEDNYANFNEFEFNLCEFGVGSELFA 353

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
               G +      D ++L+ + +A + +        ++ + E+   A  L  +    +  
Sbjct: 354 KFKNGFEEPCSFEDFRALMEEILALESD-----PAAAQKTREELFYAQSLARYFSFTLRQ 408

Query: 534 -----LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                L+     +    G   I     L    L+   +       +L  +     +    
Sbjct: 409 ICEIFLIKLARLRLDHVGGGKIGVMGVLESRGLKFEGVIVLDFNDDLVPKRSVNEMFLSS 468

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
               + G     +           + G   K  I  ++           L  F+ +    
Sbjct: 469 RVRQKAGLIGYVDRENLQRFYYESLIGGAKKAAICYAANEE--KIASRFLGEFNAVEDAR 526

Query: 649 LNEGVWPKN------TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
            ++  +                 +  ++++N    EK   ++      A   +     RS
Sbjct: 527 FSDESYAALFNGEFDAKTGFADEQKFEAEMNPHLDEKNEAKSG----QAKTAKE----RS 578

Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
           L E ++          +         +    +    L++ +    T  +P          
Sbjct: 579 LFEFDVQGELDSGANLVGKFDENATQNKTPSQNPRALNFIKFTRKTPAKPKIFEQDIIVK 638

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            +      SFS +   +  P   Y R IL +       +     D G   H  + E   K
Sbjct: 639 HDFFAIPLSFSRLNTYLQCPRRYYYRYILGVKPPVMP-QTASAADFGNSLHRALFEYYSK 697

Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKI 881
               +  +         ++   + N+PP    I      K    F   E+   ++     
Sbjct: 698 FERFDLAK--------FETVLRELNMPPLEREITMIEMEK----FKAVEDARYEAGWRVH 745

Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
            +           G+ +TG  DRID  + G + + DYK+G              QL    
Sbjct: 746 GLEKELDSVFA--GVRITGKIDRID-GRGGELAVIDYKSGK-------FDAKSLQLPFYE 795

Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
           A +           +    ++  LK         N     ++ E   ++++ L  I
Sbjct: 796 ALV----------GRPCEGYFYDLKDN------MNLVAGEASTEALAEAIEQLKSI 835


>gi|209883635|ref|YP_002287492.1| double-strand break repair helicase AddA [Oligotropha carboxidovorans
            OM5]
 gi|209871831|gb|ACI91627.1| double-strand break repair helicase AddA [Oligotropha carboxidovorans
            OM5]
          Length = 1161

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 81/809 (10%), Positives = 190/809 (23%), Gaps = 59/809 (7%)

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
               W    ++                                   G+     R +  V +
Sbjct: 387  YASWVHFKLDRGIDH--VLIDEAQDTSPRQWDIIESFVSEFTAGAGARGEIHRTVFAVGD 444

Query: 252  HPNGAIVLPGLDCHIPTAIWNT-ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                     G              T  +    S  +    H   S A +LD +D    + 
Sbjct: 445  EKQSIFSFQGAAPREFDLRRRAMATRHAHANLSFESVSFKHSFRSGAAILDSVDYVFREQ 504

Query: 311  --------KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                         V + +   +    + +   +       +  +     +     +V L 
Sbjct: 505  TIYRSIHIDDAYPVHDALPDAAPATVELWPVEEPDTREEIEGWQAPFDTVSPASPEVKLA 564

Query: 363  EADNEREEAISIAIAL-----RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
                   +A+  A  +     R           L+         V   L   GI +  + 
Sbjct: 565  RRVESEIKALIAAGTMTGPLGRRRRLRYGDVMILVRRRGAAFDAVIQALKHAGIPVAGAD 624

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
             + L+  +    L  L +A+    D +A+A  +K PL      +           L    
Sbjct: 625  RLKLTAHIAVIDLMHLADALLLPQDDLALAVALKSPLFGLTDDDLLTIAPTRTGSLR--- 681

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                       ++L     ++++        ++      +         +L   +     
Sbjct: 682  -----------EALAAHAASSERLRIASEFLETCAMRAARMTPFAFFAWLLGGDSGGHGG 730

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVC-LDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
            +       G+ +     +     L          +    W       +      + +   
Sbjct: 731  RARILKRLGHEANDALDEFLELALTYERKAPASLQGFIAWLRAADTDVKRDMEILRDEVR 790

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             +  +  + ++     +   T  P   +   L ++          + ++  G  +     
Sbjct: 791  VMTVHGAKGLEASVVFLVDTTTSPSDTQ--RLRLIHMPHGNAGPGEVVLWAGAKDDD--- 845

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                    +  +    +    E         +         +     +  N   +     
Sbjct: 846  --------TEDVARARDTMRGEIEDEYRRLLYVAMTRAAERLIVGGCKPGNRNNVRELSW 897

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP-KPFPPLEAQPRTYSFSEI 775
              L+  G       L +    +    R            R      P E +         
Sbjct: 898  YDLIEKGLAASPLVLTEVETPFGPAKRYARKDEAALDIARDDAASAPAELKSLPDWLYAD 957

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
               +       A      D       +     R  L    +  L++   +          
Sbjct: 958  APQVRAKEITLAPSSAGGDTAAPLSAEQTILQRARLTGQWVHRLLQSLPDLAQEAREAAA 1017

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE--KIQSSIEKIFVNIPAKMAIES 893
             + +  H +  +         R    +   + ++      +     +  V+I  ++ +  
Sbjct: 1018 LRFLARHVQDAS------EEERTTLIRQVLALIDDPRFAALFGPGSRAEVSIAGRLTLNG 1071

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
              + ++G  DR+ +     V I DYKTG  P+          QL+L  A L   S     
Sbjct: 1072 TSVRVSGQIDRLVMTPD-EVMIVDYKTGAVPQGA-MPPHYVRQLALYRAVLAKLS----P 1125

Query: 954  CRKVANLFYIRLKQKFKIDCITNDKKKYS 982
             R V          +      +    + +
Sbjct: 1126 GRPVRCALLWTQGPQIVEVPPSTLDAELA 1154


>gi|172040183|ref|YP_001799897.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
            DSM 7109]
 gi|171851487|emb|CAQ04463.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
            DSM 7109]
          Length = 1188

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 123/1144 (10%), Positives = 267/1144 (23%), Gaps = 170/1144 (14%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-- 70
            P +     ++  L++                   V +  PTK A   + ++ +       
Sbjct: 72   PGTGKTSLLVDTLVHFLAAGGSAE---------EVMVVTPTKDAATAVNTQLVARLASMS 122

Query: 71   --KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK 128
               +T  P ++S+         + LL S    P      RLL  A      R  L   ++
Sbjct: 123  SFAATRTP-VRSVHSWAFAALRSMLLASDREAP------RLLTGAEHDADVRLLLAGHVE 175

Query: 129  DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188
            D     P  +       +  A+ L D++   E       +L AL  +     W+ A  FL
Sbjct: 176  DGAGAWPKHI-RPALGYVGFARQLRDLLLRAEERGVGPGELTALGEKYDQPMWVGAGQFL 234

Query: 189  KIASK---------------------------------YWTERLVELNASSPVGYQIALM 215
                +                                  W E+L  +          A  
Sbjct: 235  DEYRQTRRLAQSISLNASELLHTTLQEMADGPGRAQLDRWREKLRLILIDDAHNLDPAAA 294

Query: 216  RAEAEHLMKGTKGPIIIAG-----STGSIPATARLMSTVANHPNGAIVLPGLDC------ 264
                +      +  +++AG           A   L+S  A   N  +VL G         
Sbjct: 295  EFLEQFFT--PETRVVLAGDPDQCVFHFRGADEELLSKYAADENHRVVLSGSQRFGAPTA 352

Query: 265  -------------HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                              +      ++     +       P    A        +R    
Sbjct: 353  RAINALTGHLPHVDTRIPLRVAEGAEAAQEAEATAGELVAPDAGRAGATSGAGGERNQPI 412

Query: 312  RLGNVSNEMYGRSMVISKSFLPP--DTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            R+   ++    R  +          D    ++  ++   +  I      +         +
Sbjct: 413  RVLRANSGTAERLHITDALRRAHVRDGVAWQDMAVIVRSVGEIAPIRRALLTHGVPVRVD 472

Query: 370  EAISI------AIALRMSLDENKKKS------------------ALITADRNLARRVKLE 405
            +   I         L  +L+   +                     ++     +  +    
Sbjct: 473  QTSIILAEQPLIRLLLTALEATYRPLENSEVRVLMESMVGGADPIMVRRLERVLAQALAR 532

Query: 406  LTRFGINID-ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
                G  +   +AG+P  ++   S L +   +     ++ A     +  + +        
Sbjct: 533  QRLQGKPVPENTAGLPFQSSDALSTLLNGTASAEDAAEWTAGFNNRELQILQDMSDVLTA 592

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
             R                +    L + + +R                      ++A   V
Sbjct: 593  GREAQRAGQSVEMVLWEIWKATGLDTRLQERALRGGTFGSQADQDLDSVMMLFDMAGDFV 652

Query: 525  DHILQC----------ITPLVTYKT------------NKNSTCGNLSISDWTKLTVTCLQ 562
            +                  L T                 ++  G    +           
Sbjct: 653  ERHPNASIRTFCEEVRAQELPTGGRERGVASNAVEILPAHAAVGRQWHTVVVTRVQEGSW 712

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                        L   +         +++    S +      ++  I+R      V    
Sbjct: 713  PAGPTVGGLFGQLELVDLLDRGIEPGTRVSRVASAVHEERRLFLVAISRATRSTLVTCID 772

Query: 623  EKSSTLFILGTLESRLLNFD--TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
              S    +       + +     + LG +++        +       +Q +L L      
Sbjct: 773  NASVENGVPSRFVEEITDAPGAAVPLGTVDQIEQEDPVGQEATPGEPVQGELGLGLELGD 832

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
              Q       A+    L  +  L      +   R L    ++           +      
Sbjct: 833  SAQQGGPAVQASPAEQLSSSDQLSPAEQLSALPRVLALEPLIAELRDVVTDPTQRHHRRV 892

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPR-------------TYSFSEIKQLINDPYAVYA 787
               +      +       P                      + S S++  + N     + 
Sbjct: 893  AAARNLAAMAEAGIFGSHPVDWWGMAEPTTMERVTDRRGGVSLSPSKLDNIDNCALKTFF 952

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                          + +    GT+ H I   ++++ ++            +  +      
Sbjct: 953  DDNRGAQE------ETNPMRVGTVVHAIAQAIVQQDLS-LEDAQYAARTALKWAVVGPAF 1005

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----SIGIHLTGFAD 903
                    W      +       E   Q+   +  V       +        + L G  D
Sbjct: 1006 EVNAALERWEQGIANLHSWI--TETCTQTEGTEWEVEQQLDTTLGTLPTGEEVFLRGRID 1063

Query: 904  RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
             +     G V + D+KTG  P K  A+     QL      +          ++      I
Sbjct: 1064 LMATDADGRVVVYDFKTGKTP-KTAAEAQASRQLGAYQFLVHVN-----RGKQPYGAHLI 1117

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
                      +    +   + E   ++ +NL+     +    Q         +       
Sbjct: 1118 Y--PATSEGKLKKSSQPDFSPEQLAETRQNLLAAAEQISEPVQ----IATPGDAQCKYCS 1171

Query: 1024 YDHL 1027
            Y HL
Sbjct: 1172 Y-HL 1174


>gi|284032498|ref|YP_003382429.1| ATP-dependent nuclease subunit B-like protein [Kribbella flavida DSM
            17836]
 gi|283811791|gb|ADB33630.1| ATP-dependent nuclease subunit B-like protein [Kribbella flavida DSM
            17836]
          Length = 1050

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 115/921 (12%), Positives = 257/921 (27%), Gaps = 121/921 (13%)

Query: 189  KIASKYWTERL-VELNASSPVGYQ----IALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243
             I +  W   L         V        AL  A  E       G   +A ++G  P+  
Sbjct: 105  PIVAATWRTALSKAPGVFDEVAEHPSTIQALAAAHRELRDLSDPGLEKVAAASGLGPSLI 164

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            +L   V +           D +  T +    TE++T   ++     +   Y    L   L
Sbjct: 165  QLHRHVCDQ-------LQTDWYDETDLLRAATERATADPAAVAELGSLVLY----LPQEL 213

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-DVALI 362
                        ++       + ++               I  +  P+I K +     ++
Sbjct: 214  TQAEASFVASLGIAAADVTVIVGLTDVKRADRAVRRSLERIGIDLPPSISKNYPVATEVL 273

Query: 363  EADNEREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
             A +  +E   +   +  +L+     + + L  A    AR +   L    + ++     P
Sbjct: 274  NASDADDEVRCVVRDVLATLEKTPAHRVAVLYAAATPYARLLHEHLAAAKVTVNGPGTRP 333

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            +     +  L  +L  +        +   + +   +    E         + +       
Sbjct: 334  VHERALARTLLEVLALVDHDLPRADLFRALANAPTRDFTGE--------RIPVPQWERLS 385

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
             +  ++      +               +    +    +A     +    +         
Sbjct: 386  RAAGVVRGDDWDVRLARYADTERRTADQERGAEDPRPAVARRAEHNASHALRLHAFAVEL 445

Query: 541  KNSTCGNLSISDWTKL-TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
            +        +  W++L  V       L        +  +     +      +        
Sbjct: 446  RRRLNAAALMESWSELSHVVLRLFHDLLGDYASLPVEEQYAAVAVEGTLRGLSTLDELGT 505

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              ++  +  +  L   +++       + + +     S  L+ D + + GL E ++P    
Sbjct: 506  PASLTVLRDVLDLELQQSLPRVGTFGTGVLVAPLSASIGLSVDVVFVVGLAEDLYPGRLH 565

Query: 660  KNPFLSRVMQSDLNLK---TAEKYIGQAAHDFEMA-NGTRHLIYTRSLRENNIPTI--AS 713
            ++  L   ++     +     ++   +  H       G   ++ +    +    +    +
Sbjct: 566  EDALLPHRVREAAAPELASARDRLDRKQRHLLAAFSAGASRVVASFPRGDLRRSSRRLPT 625

Query: 714  RWLQ-RLLVLGGTDFFDNL----------------------------KKRGQCYLDWTRK 744
            RWL   L  L G                                    ++          
Sbjct: 626  RWLLGTLRELSGDHALAATVWDQASYDGHLLTSASYSGSLTTAKLPATEQDWQVRAAAAG 685

Query: 745  LDYTTKQPHYKRPKPF--------------------PPLEAQPRTYSFSEIKQLINDPYA 784
            L  T       R                        P    + R  S + ++     P+A
Sbjct: 686  LTLTDAVVDRARLLLRARAADEFTRFDGNLSGVDGLPDYATEDRIASPTSLEAYAACPHA 745

Query: 785  VYARRILKLDFIPHFKKDP--DRTDRGTLFHNIITELIKKRI-------NKNTPEINHLM 835
             +  R+L++  +   +          G L HN +   + +            +PE   L+
Sbjct: 746  YFVERLLQVQPLEAPEDLLVISPVQVGNLIHNSLDAFVTRLAGSLPGYGEPWSPEQRSLL 805

Query: 836  KQI---IDSHFEKENLPPHIDIIWRHLFH------KISHSFLEHEEKIQSSIEKIFV--- 883
              I   +   FE E L  H  +  R           +         +  +S+    +   
Sbjct: 806  LTIGADLAQRFEAEGLTGHPRLWQRERLRILGDLMVLLDDDDRWRAEHNASVVASELRFG 865

Query: 884  ---NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ-----KLIDP 935
                 P ++ I S  + L G AD++DL K G + +TD KTG   + E  +          
Sbjct: 866  LDGEPPVEIPIPSGRVLLRGSADKVDLGKDGTIYVTDVKTGGFSRYEAIENDPVAAGTKL 925

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            QL + A A +A    +    +     Y  +++  +   +          E++E+ +  L 
Sbjct: 926  QLPVYAYAARARLGDESTPVE---AAYWFVRKGGRRIPVPLTP------EVAERYVHALD 976

Query: 996  EIVTLLQNGEQPFISHLRLSE 1016
             IV+ +  G  P  +      
Sbjct: 977  VIVSSIAAGYFPAKAPEVPDF 997


>gi|78223101|ref|YP_384848.1| exodeoxyribonuclease V, RecC subunit [Geobacter metallireducens
           GS-15]
 gi|78194356|gb|ABB32123.1| Exodeoxyribonuclease V, RecC subunit [Geobacter metallireducens
           GS-15]
          Length = 1060

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 101/936 (10%), Positives = 213/936 (22%), Gaps = 101/936 (10%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L   LVE  R     P  LA   I V +K   + L  E    TG             +  
Sbjct: 14  LVDRLVEVLRRPLAAP--LAPEVIVVQSKGMQRWLSMELATATG---VWANGAYPFPNAF 68

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                   L       P         L+  I+   +   D          L+        
Sbjct: 69  VWDLFRKALPDLPAASPFDPA----VLSWRIMGLLSGFLDQPAFAPLAGYLAGEERELKL 124

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
             LA  +AD  D                 E     W             W     E    
Sbjct: 125 YQLAGKIADTFDQYTIFRPDMIARWEQGTED---HWQAVL---------WRALAGEGRGL 172

Query: 206 SPVGYQIALMRAEAEHL--MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                +    R  A            I + G +        +   +A+     + + G  
Sbjct: 173 HREAVRSEFFRRLARGEVDTALFPERITVFGISYLPQFHLDVFRRIADFTEVNLFVMGPC 232

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYS--------LAKLLDFLDIKREDVKRLGN 315
                 I         +          +P  +         +  L  L         L  
Sbjct: 233 REYWADILPERIIARLSPEEREVRIEGNPLLASLGLLGKEFSDTLVELGATAGGDTDLYG 292

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
            + +     MV +              +        +      + +    +   E   + 
Sbjct: 293 DAPDTTLLGMVQNDILR---------LEGSSGDQRPVDAADRSILISSCHSPMREVEVLH 343

Query: 376 IAL----RMSLDENKKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTTL 425
             L      + D   +   ++T D          +       R  I   I+         
Sbjct: 344 DTLLNLFASADDLTPRDILVMTPDIETYAPYISAVFDGCRDPRLKIPYSIADRSIRREGG 403

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
            +    ++L+   K     A+  ++        F             L   R        
Sbjct: 404 LAETFLAILDLSGKRFPVTAVTEILASSPVHGRFGLDAGHLELIRTWLEETRIRWGMDGE 463

Query: 486 MDLKS-LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV----------DHILQCITPL 534
              ++     R  + +           + EED  +   ++            + +    +
Sbjct: 464 ERRRAGFPPYREHSWRAGLDRLILGYAMPEEDGRMVEGILPFDAMEGEGPAVLGRFAGFV 523

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                  +      ++++W +L    L +          +L        + +    + + 
Sbjct: 524 EGLHALVDELDRPRTLTEWVRLCRRILDDFFAPGEEGAFDL---ATLNGILTELETVRDE 580

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                A A+  I    R      V+     +  +     L  R + F  + L G+++G +
Sbjct: 581 AGFGGAVALPVIRAWLRGRLDREVRGLGFMTGGVTFCAMLPMRSIPFKVIALLGMSDGAF 640

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIA 712
           P+      F           ++             + +  RH I + + +   +N     
Sbjct: 641 PRRNTPPGFDLIARDRRRGDRSLRDEDRYL-FLEALLSARRHFIISYTGQSIRDNSTLPP 699

Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLD---------------------------WTRKL 745
           S  +   L   G  F D      +  +                               + 
Sbjct: 700 SVLVDEFLDYLGRRFSDGTPDFPKKLVSKHRLQPFSPTYFTGDGTLFSYSEENCRAVAQR 759

Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                       +P P    +  T S S +    ++P   + R  L +  +       + 
Sbjct: 760 LKGAVAVPTFITEPLPEPPDELLTVSLSALLYFFDNPARYFVRTRLGIR-LDELPPPLED 818

Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKIS 864
            +   +  + +     +    +        ++       +  LPP     +         
Sbjct: 819 REPFAI--DSLDAYRLREEMLDLALAGREPRETFAVARARGILPPARQGELLFRGLGDGV 876

Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
                    +      +    P  + +      +TG
Sbjct: 877 EDLAAQIRALTGGRSPLD---PLPVDLALGPYRITG 909


>gi|310820607|ref|YP_003952965.1| hypothetical protein STAUR_3346 [Stigmatella aurantiaca DW4/3-1]
 gi|309393679|gb|ADO71138.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1071

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 110/931 (11%), Positives = 232/931 (24%), Gaps = 147/931 (15%)

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
            +           A+   +++  ++       +L                  L      +
Sbjct: 75  ETPFGGFIQEPAFARAALELVLDMKAGRLTPRELQDAAEV-LPQERRSRLRVLARLYDAY 133

Query: 196 TERLVELNASSPVG-YQIALMRAEAEHLMKGTKG--PIIIAGSTGSIPATARLMSTVANH 252
            +R+  L  +      + +L   +A       +G   +++ G     P+   L+  +A  
Sbjct: 134 AKRMEALGLADREDVLRGSLQALKAGRWPSAWEGVDTLVLHGLYDVRPSVLELLLALAEL 193

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                V   ++  +  +        +      N   +          L            
Sbjct: 194 CEKRQVALRVETPVGGSPVADAALAALFRAFENRGETLGHVDLFKADLT----------- 242

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                              L      + + ++    +    +     ++  A +E  +  
Sbjct: 243 --------------FEARPLAELGRHLFSEEVARGALETPVEALRMWSVGSAQDEARQIA 288

Query: 373 SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                L     E  + +         AR +   L   G+ + + +G PL+      +   
Sbjct: 289 RDVRRLVAEGVEPGRIAVAWREPGPEARWLAEALGELGVPVRLPSGEPLALAGPVRLALD 348

Query: 433 LLNAIFKLNDFMAIATLVKHPLA-----KFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
           L            +A LV    A             L       +             + 
Sbjct: 349 LPLLAEDGFPAERVAELVASRYAPTLSRGAPEAPATLLTLAAVRDDRLGASRGRGAYDVR 408

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
           L+ L    +A +    +             E    + +     +  L  +          
Sbjct: 409 LEGLARRMVAARDEKANAVRLLRERCLRLMEECRRIPET-GSALELLGAWWQAVRQLGLM 467

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            S  +   L    L  + L    +      +  G  ++ L   +       + +   +  
Sbjct: 468 DSEGELEPLRDGALGLLGLKARARDDAAR-QALGLRVAELERGLRRVEGGPRLSRRTFGR 526

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP------------ 655
            +   +   ++ P    S  + +L   E     F  L L G+ EG +P            
Sbjct: 527 WLVDAMRDVSLPPGGPSSGAVEVLDIRELAGRTFGHLFLAGMTEGRFPGHEAPNPLLGDA 586

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEK---YIGQAAHDFEMANGTRHLIYT---RSLRENNIP 709
                N  L R +      +  E+    + +    F           +            
Sbjct: 587 DRVELNKHLERDVFRLTGGEFEERAPWRLTEDRLLFASVLVAAEEQVSLSFAVAGVGGQE 646

Query: 710 TIASRWLQRLLVLGG--------------------------------------------T 725
            + S +L+ +  L G                                             
Sbjct: 647 QVPSAFLEEVRRLTGRNWEARALMAVPPLDDVLTEPELRQRVALETMASARLRVTEPDMA 706

Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQ---------------------PHYKRPKPFPPLE 764
           +        G+ +    R+L     +                     P            
Sbjct: 707 EPLLRRHFAGEAWYAEARELARVELERLHFFSDPAHRVGPHTGHVVGPGLPEALRETFRF 766

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
            + R  S S + +  N  +  +    LK+       ++ D   RGT +H ++ E+ ++  
Sbjct: 767 DETRPLSASALARFGNCGFQGFLTYGLKVAEPEQPGEEFDARGRGTFWHRVVEEVFRRLR 826

Query: 825 NKN---------TPEINHLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISHSFLEHEEK 873
            K            E+           FE+      P +  + +     ++   L  E +
Sbjct: 827 EKGLLGKGLEEIPEEVLTAAVAEAVRSFEQRHHVGHPELWKLAKERARAMARRILADERR 886

Query: 874 IQSSIE--KIFVNIPA------------KMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
                        +               +A     IH  G  DR+D    G V + DYK
Sbjct: 887 GLPFERYMPEDFELKFGPEALRDTWKQVSLAAGQEAIHFEGKIDRLDQRA-GDVGVIDYK 945

Query: 920 TGDNPKKETAQKLI--DPQLSLEAAALKAGS 948
           +G   K+E  +KL+  D QL L   A +A  
Sbjct: 946 SGRLDKRELKEKLLSSDFQLPLYLYAARASG 976


>gi|225025574|ref|ZP_03714766.1| hypothetical protein EIKCOROL_02474 [Eikenella corrodens ATCC
           23834]
 gi|224941612|gb|EEG22821.1| hypothetical protein EIKCOROL_02474 [Eikenella corrodens ATCC
           23834]
          Length = 1081

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 112/894 (12%), Positives = 222/894 (24%), Gaps = 97/894 (10%)

Query: 44  LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           LA   I V ++   + L     E +G  + +         +  +     L  +  LNP  
Sbjct: 30  LAPEEIVVQSQGMRRYLNHYLAERSGIAANL--NFSLPAALSWQLTRRFLPDAPRLNPFA 87

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
             + R   L        + L +    L       L  S A A  LA  LAD+ D      
Sbjct: 88  PEVLRWRLL--------SLLENADSALPAVLQGYLKSSTAAAYHLAGRLADVFDQYLVYR 139

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL-VELNASSPVGYQIALMRAEAEHL 222
             W             W     + L  A + W   L   L A +PV ++ A        L
Sbjct: 140 PHW----------LAQWEQGKLNGLG-ADEAWQAALWRTLAADTPVAHRAAQHERLLAAL 188

Query: 223 MKGT-KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                    +  G +   P    L+  +A H +  +            I     ++    
Sbjct: 189 NPARLPQRYLAFGISTLAPVYLDLLQALAEHTDVHLFAVNPSQQYWGDI--QSPKRLAAQ 246

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                  + HP      L       R+   RL   +  M    +  + S  P     ++ 
Sbjct: 247 AEPAAEEAGHPL-----LSSLGKQGRDFFDRLAVSTRAMEQVELFPAPSESPSLLQHLQA 301

Query: 342 TDILENKIPNIQKCFSDVALI-EADNEREEAISIAIALRMSL----DENKKKSALITADR 396
              L               +I  A +   E   +   L   L    +      A++T   
Sbjct: 302 DIQLLRLPEKGSAQMDGSIVIQAAHSPLRELQILKEHLLRRLADNPELQPHHIAVLTPAV 361

Query: 397 NLARRVKLELTRFGINIDISAGIPLST------TLHSSILTSLLNAIFKLNDFMAIATLV 450
                    +         +    ++            +   L+  +    +   +  L+
Sbjct: 362 EDYLPFIHAVFGEAAPGSRALPYSVADVRLSRSQPLMLLAEQLIALMQSRFETERLLPLL 421

Query: 451 KHPLAKFGF-----PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
                +  +       ++L R+   L +      +   +      +   + AT+++    
Sbjct: 422 DAQAVRRHWQIDETDAEFLRRSVAELNVHWGADAEMRAEHSGSGKVFTWQQATERSVLGW 481

Query: 506 PHW------QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                       +     + A          +  L   + +        SI  W +    
Sbjct: 482 LLPEGEGTLWQGVHPWPADFARQPAQAAWFVL--LGKLREHHRRWQSPASIEGWIERFRA 539

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
            L +   D   +     +++  + L++   +    G             + R     +  
Sbjct: 540 LLADAAGDTPDEADQAAWQQISQALAAWQEEAALAGYTAALPPDNACQHLRRFFGQSS-- 597

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                   +     +  R L FDT+ L GLN+G +P+ T    F           ++   
Sbjct: 598 EAAFLRGGITFCSMVPMRSLPFDTVCLLGLNDGKYPRQTPAPAFDLIARHPQSGDRSRRD 657

Query: 680 YIGQAAHDFEMANGTRHLIYTRSLREN--NIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
                     + +   HL  +   R++  +     S  L  L+         +       
Sbjct: 658 DDRYL-FLESLLSARSHLYLSYIGRDHLKDEAQAPSPLLSELIDTLAQMAGQSSADFAAA 716

Query: 738 YLDW----------------------------------TRKLDYTTKQPHYKRPKP---- 759
           ++                                     R+              P    
Sbjct: 717 HVRQHPLQAFSTRYFVPQQDGESSAELSENGLSGSLSGLRQDYAQALNQPAAEAAPFIGD 776

Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
             P  A   T S        ++P   + RR L+       +             + + + 
Sbjct: 777 TLPEAAGEPTVSLDSFLNFWSNPVRHWLRRALQWKGPYADRPADSAEPYAIEHTDEVKQR 836

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
                           K   DS      L   +    R    ++    L    +
Sbjct: 837 YLDARRHREDFAQTEAKLQADSLLPAGLLGEILQEPERTAAKQLDSELLASPRE 890


>gi|16127768|ref|NP_422332.1| UvrD/Rep family helicase [Caulobacter crescentus CB15]
 gi|13425272|gb|AAK25500.1| helicase, UvrD/Rep family [Caulobacter crescentus CB15]
          Length = 1203

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 97/975 (9%), Positives = 236/975 (24%), Gaps = 126/975 (12%)

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVS-NIQRLLELARLILIWRNKLPDIIKDLYPE 133
            LP  +++  V+ +        S      V+ +    L+LA         L     +  P 
Sbjct: 293  LPAWRAVASVLFDGGGKQDAKSAEALAAVARDPDATLDLA------LRALFTEGGEGTPA 346

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193
            +  +      +   L + L  +++  + E         ++  +       A     +  +
Sbjct: 347  TWPAKTSGLKSREDLREAL--LLEQAKLE----AAREQVRAARVAEDTQNALLLAGLYIE 400

Query: 194  YWTERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAGSTGSIPATARL 245
                      A               E +               I++  +  + P    +
Sbjct: 401  RHMAEKEARGALDFTDLIDKTRLLLTEKVEAAWVLYKLDGGIDHILLDEAQDTAPEQWEI 460

Query: 246  MSTV-------------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS--- 289
            +  +             +       +    D       +           +         
Sbjct: 461  LRALTADFFVGETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPTRLLEETQGYISRIEA 520

Query: 290  -------------THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
                             + +   +D L    +  + +     +   R  +          
Sbjct: 521  VGAVGKGVPLTVSYRSTHEVLSFVDALFSDPDTREGVPPPVGQDLVRHELFRHGHPGCVD 580

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--------------RMSL 382
                  ++        +K   +     A+    EAI+                   R   
Sbjct: 581  LWPLTRELPGEDREAWEKPLDEEGERSANRRLAEAIAAETRAILDRGDAVFDKDLGRHRA 640

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                    L+   + L   +   L R G+ +  +  + LS+ +    L +L   I   +D
Sbjct: 641  AHAGDILVLVRRRKALFEEIIRALKRRGVPVAGADRLALSSHIAFEDLVALGRFILFPDD 700

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNA--LELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             + +A L+K P    G  + Y         L +   R ++   +    ++++   +A  +
Sbjct: 701  DLTLAALLKTPFCGLGDDDVYALAKGRRGTLWVELTRRSEERPEWAAARAVLDWALAEGR 760

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                   +   L   D +                     +  +       ++  +     
Sbjct: 761  RRQPFEFYAGWLGLTDAD-------------------GRSHRAKVLTRLGAEAEEALDEF 801

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
            L  V   E R + +L           +  K    G+  +   +                 
Sbjct: 802  LAQVMEAEQRGVRDLEALVADFAALDIIVKREMEGARREVRVM------------TAHGS 849

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
            K  ++  +F+  T   R      L++      +W  +   +  +S   +    L+  ++ 
Sbjct: 850  KGLEAPIVFLPETTVKRGAGGSPLLVTEDGALLWCASGKNDCAVSAKARK---LREDKES 906

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG--TDFFDNLKKRGQCY 738
                   +      R  +      +                      D    ++  G   
Sbjct: 907  QEALRLLYVALTRARERLILCGRIDARTKDDKVGGWYAAARAAFAHPDIAPGVRTIGDGE 966

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
              + R        P                    +                  ++     
Sbjct: 967  TAFLRYGPDPLGAPRVAPATAAVAAPPAWIMAQATPEPAAARYAAPSRLEDTARVPAPSP 1026

Query: 799  FKK--DPDRTDRGTLFHNIITELIKKRINKNTPEINHLM--KQIIDSHFEKENLPPHIDI 854
              +     R  RG L H ++  L      +       ++  ++ +      E      ++
Sbjct: 1027 LARIAGLGRYRRGELIHKLLQLLPDLPPAQRPDAARRILAAERDLTDTQRTEMASAAFEV 1086

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914
            +    F  +                +  V +    A    G+ ++G  DR+ ++    V 
Sbjct: 1087 LEDARFAAV-----------FGPNSRAEVALAGTSAHLPQGLAVSGRVDRL-VVDDARVL 1134

Query: 915  ITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYKT          A      Q+++  A L+         R V            K+ 
Sbjct: 1135 VVDYKTNRPSPDRIEDADTAYLAQMAVYVAVLREV----FPGRTVEAALVW--TDGPKLM 1188

Query: 973  CITNDKKKYSADELS 987
             +       +   L+
Sbjct: 1189 PVPEKVMALALARLA 1203


>gi|329911424|ref|ZP_08275524.1| hypothetical protein IMCC9480_456 [Oxalobacteraceae bacterium
            IMCC9480]
 gi|327545901|gb|EGF31005.1| hypothetical protein IMCC9480_456 [Oxalobacteraceae bacterium
            IMCC9480]
          Length = 269

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 81/272 (29%), Gaps = 21/272 (7%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-- 826
              S S    LI  PY  +A R+L L+ I      P++ D G   H I+ +          
Sbjct: 13   KLSASGYNSLIACPYQFFATRMLGLNAIDELSDLPEKRDYGDWLHQILAQYHATVSAGQV 72

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNI 885
               +   L+  + +  F +E       + +   + K+  ++L    + +    + +    
Sbjct: 73   PLAQRAALLASVSEQIFRQELARNAAALGYYVRWQKVMPAYLHWAAEREEQGWQFVIGEQ 132

Query: 886  PAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA-QKLIDPQLSLEAA 942
              +  ++     I L G  DRID    G   + DYKT          ++  D QL     
Sbjct: 133  QMERDLSWPGGAIRLHGRVDRIDEHADGTRAVLDYKTKAVQALRDRFKQTEDHQLPFYGL 192

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
                     +    ++   Y+ L+                  +  E        I+  + 
Sbjct: 193  ---------LSTTPMSAGHYVALELTGSKTGDVAAPDYALWQDTLE------HRIIEQMH 237

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWR 1034
                         +      +   L R   W 
Sbjct: 238  AISTGAALPANGIDTVCQYCDVRGLCRKGAWA 269


>gi|319898220|ref|YP_004158313.1| ATP-dependent nuclease subunit A [Bartonella clarridgeiae 73]
 gi|319402184|emb|CBI75715.1| putative ATP-dependent nuclease subunit A [Bartonella clarridgeiae
            73]
          Length = 1152

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 86/818 (10%), Positives = 198/818 (24%), Gaps = 109/818 (13%)

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIPA 241
            I  K + +     N           +            ++ +      I++  +  + P 
Sbjct: 347  IYLKIYADLKKVNNVLDFDDLIERTLHLLQHKGASQWVQYKLDRGIDHILLDEAQDTNPK 406

Query: 242  TARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH-- 291
              +++  +A           N   V    D       +     ++               
Sbjct: 407  QWQIIQLLAQEFFAGHSQRTNIRTVFAVGDEKQSIYSFQGAVPENFAENGRMIQKKVQQV 466

Query: 292  --------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL-PPDTSDMRNT 342
                      YS     D L       +   N           + +          +   
Sbjct: 467  EQKFEKIQLNYSFRSTADILKSVDLVFETPENYKGLSAEHVKTVHEPIRVHSPGDVIIWD 526

Query: 343  DILENKIPNIQKCFSDVALIEADNER-EE--AISIAIALR--------MSLDENKKKSAL 391
             I +          S V  ++    R  E  A +IA  L+          L        L
Sbjct: 527  TISQKTNELPDDWLSTVDHLDTPQIRLAEKIAETIANWLKNGEMLPAKKRLLRASDIMVL 586

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +         +   L    + +  +  + L+  +    L +L   + +  D +++A ++K
Sbjct: 587  VRKRDQFVSALSRALKLRHVPVAGADRLQLTAHISVLDLMALARFVLQPQDDLSLACVLK 646

Query: 452  HPLAKFGFPEKYLSRAKNA--LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
             PL      E Y   A+    L         +      +   + +      +   V  + 
Sbjct: 647  SPLFSLSENELYQLAAQRKGSLWESLCTHTSSHASFKTIFDRL-NTYRALVDKMPVFEFY 705

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
            S +   DK    +L     +    L  +  +  +                 L+ + ++E 
Sbjct: 706  SYILNNDKGRQKILARLGTEANEVLDAFMDHTLTIQKTG-----LPGLQAFLEILSINEP 760

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                 L      +    +    +     ++   +  +D                      
Sbjct: 761  EIKRELD-----QNCEEVRIMTVHAAKGLEGAVVFLVD---------------------- 793

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
              G+           +   L +             ++     L+              + 
Sbjct: 794  -PGSAIWHPKYAPHFLKFFLGDKQTFIWRPNAQHHTKHFDKVLSRLKERAEEEYKRLLYV 852

Query: 690  MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT- 748
                    +        +          +L+         ++K   +    W   +  + 
Sbjct: 853  GMTRAEDRLIIC---GYSNQKETPNTWLQLVKKALKPHAVSIKGPAEDIAAWRYCITSSC 909

Query: 749  ------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA---------VYARRILKL 793
                            P  P     +  + S + + +    A            ++   L
Sbjct: 910  STPMYQEIPCDAHHVFPPLPAFFHDKMPTESTLSKPLRPSVAGIIDAKTEFFPNKKHFSL 969

Query: 794  DFIPHFKKDPDRTDR----GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
              +   ++   +       G   H ++  L      K        +     SH+ K    
Sbjct: 970  SPV--LEEKNTKRTFSIEYGNFIHKLLQHLPNYTPTKRQDYAQFYLNTKA-SHWHKTQRE 1026

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909
              +  IW     KI  +     + + S      V +   + I      ++G  DR+ +  
Sbjct: 1027 NALHHIW-----KILDN--PKLKPLFSRFSHAEVALMGIVKINGKEQIISGQIDRLCIT- 1078

Query: 910  SGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKA 946
               V   D+KTG  P       +    Q++L    L+A
Sbjct: 1079 DNSVFFADFKTGLPPENDTDIAQRHLLQMALYQKLLQA 1116


>gi|209551530|ref|YP_002283447.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209537286|gb|ACI57221.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1183

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 94/813 (11%), Positives = 215/813 (26%), Gaps = 78/813 (9%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIAG 234
             A    +  +  + E   + +                +  +              I++  
Sbjct: 361  AALVLAERLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGIDHILVDE 420

Query: 235  STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
            +  + P    ++ ++A          P    +    D       +     +  +  S  T
Sbjct: 421  AQDTSPIQWSVIQSLAEDFFSGESARPVVRTLFAVGDEKQSIYSFQGARPERFSEESDRT 480

Query: 287  TYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL--PP 334
                              S     D L+      +   N          V+ +S     P
Sbjct: 481  RRRVSDSGQSFSSVRLPLSFRSTADVLEAVDHIFREPDNSRGLSALGEPVVHRSSRIGHP 540

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------------RMS 381
               D+      E  +          A  E+      A  IA ++             +  
Sbjct: 541  GAVDLWEMVAPEAVVKEEDWTAPFDATPESAPAAILARRIAHSIGALVGRETIVDKGKER 600

Query: 382  LDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
            L E      L+         +   L  R  I +  +  + L++ +    L +L   +   
Sbjct: 601  LIEAGDILVLVRKRDAFVNALTRALKRRGDIPVAGADRLVLTSHIAVQDLLALGRFLLLP 660

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             D +++A ++K PL      + +   A            +              R A ++
Sbjct: 661  EDDLSLAAVLKSPLFDLSEDDIFAIAALRGDNESVWNHLRRF----AADGTERFRAAVER 716

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                +   +S    +     +       Q +  L T  ++        ++   +      
Sbjct: 717  LELFLRQSRSLSVHDFYARVLGSHGGRRQFLARLGTEVSDILDEFLTFTLDHESSGLPGL 776

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
               +   E         +++G+    +    +     ++A  +  +D       G +   
Sbjct: 777  QSFISTLELEAPVVKREQDKGRNEVRIM--TVHASKGLEAPIVFLVD-------GGSKAF 827

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
                   L ++ T          + +  L   +   +  +   L+      L      + 
Sbjct: 828  THTHLPKLRLIETDADEPPMPVWVPVSDLANSLTQNDAVRIQMLAEEEYRRLLYVAMTRA 887

Query: 681  IGQAAHDFEMANG----TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
              +              T H++ + +LR+++    A+ +        G  +     +R  
Sbjct: 888  ADRLVVCGYRGVRLNNDTWHMMISTALRDDHPHVEATTFSSPDGEWPGIKWRVPRVERSF 947

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
              +D   +   + ++      +P PP    PR  S S    +I++               
Sbjct: 948  ERIDR-SQERDSVERLPDGLLRPLPPQAELPRPLSPSGAGTIIDEDEGGLLVVSPLFAEK 1006

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
                +     ++G L H ++  L +    +         ++            P      
Sbjct: 1007 ERSDRSL---EKGRLIHRMLQALPEIPPAERADAAGRYAERAAR-------FWPET---E 1053

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKSGFVD 914
            R          L+ E        +    +     + +E     ++G  DR+ +L    V 
Sbjct: 1054 RRKLVDSVLKLLDEEGLQAVLSNEAQPEVSIMGTLTLEDRCYAVSGRIDRLAVLAD-RVV 1112

Query: 915  ITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945
            I DYKT   P    A        QL++    L 
Sbjct: 1113 ILDYKTNRVPPATEAAIPFAHRAQLAIYREILA 1145


>gi|152965140|ref|YP_001360924.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
 gi|151359657|gb|ABS02660.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
          Length = 1128

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 86/890 (9%), Positives = 214/890 (24%), Gaps = 98/890 (11%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGST 236
              A   +    + +  R  +          +   R   E        +     +++    
Sbjct: 239  QRARKAVVPLLEEYVRRKRDAEQLDFGDQVLLAARLAREVPAVAAGERARHRVVLLDEYQ 298

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
             +  A   L+  +     G  V    D H     W   +  +      +   +     + 
Sbjct: 299  DTSYAQLMLLRALFGA--GHPVTAVGDPHQSIYGWRGASAGNLGRFPGHFPRADGTPAAR 356

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              L          +     V+  +       + + L P                  ++  
Sbjct: 357  LPLATSWRNDEAVLAAANLVAAPLNAAPGAGAVAVLRPRPGAGTGRVRAAFSATVEEEAA 416

Query: 357  SDVALIEADNERE-EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
               A +      + E +++   +  +    ++ +A++   R+    ++  L   G+ +++
Sbjct: 417  EVAARLAEVWRADSERLAVQRRVPGADPRPRRTAAVLCRKRSQFTVLQRALRDAGLPVEV 476

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                 L TT   + + + L+ +        +A L+     + G  +     A        
Sbjct: 477  VGLGGLLTTPEVADVVATLHVLHDPARGDHLARLLTGARWRLGARDLAALGAWARHLQHR 536

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH--WQSRLSEEDKELAVLLVDHILQCITP 533
              G          + LVL       +          +  S  D           L  +  
Sbjct: 537  RAGLPPDPHEPGEEPLVLPDEVEAVSLVEALDDLPGAGWSGPDGRSLSPRAHARLSRLAA 596

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            ++    N+        + +  +  +  ++                +     ++ FS   +
Sbjct: 597  VLRRLRNRTHLPVPDLVGEVERALLLDVEVAARPGSSPASARANLDALADAAASFSAGSQ 656

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                    A  W+D       G         +  + +L    S+ L +D + + GL E  
Sbjct: 657  RPGLGGFLA--WLDAAEVRERGLEQGASEVSTDAVQLLTVHASKGLEWDVVAVPGLVERT 714

Query: 654  WPKNTAKNPFL-----------------------------------SRVMQSDLNLKTAE 678
            +P +   +P                                         Q  L      
Sbjct: 715  FPASGETDPGWLGGSGALGVLPYPLRGDREGLPRFDVEGAGTQKELDTARQRFLEACGQH 774

Query: 679  KYIGQAAHDFEMANGTRHLIYT--RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
            +   +    +      +  +        +   P   SR+L+ +L          +     
Sbjct: 775  QLAEERRLAYVAFTRAKEELLLSGAHWDDAAKPREPSRFLREVLEAPRGAVPGLVVVPPA 834

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP-------------- 782
               +       T        P               + ++  + +               
Sbjct: 835  PAPEPGAPNPRTANPQRVVWPVDPLASRRVEVAAGAALVRAAMAERAAGGAAGPEAGGPE 894

Query: 783  --------YAVYARRILKLDFIPHFKKDP------------------DRTDRGTLFHNII 816
                     A   +  L L         P                  D           +
Sbjct: 895  GGAVDEETAAWAEQSRLLLTERATAHDAPGVLLPAHLSASRLVTLAQDPDALALQLRRPV 954

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
             +  +    + T     L ++   S        P           ++            +
Sbjct: 955  PQEPRPATRRGTAFHAWLEQRFTASSLLDLVDLPGSADEDAADDAELEALQRRFLASEWA 1014

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRID--LLKSGFVD--ITDYKTGDNPKKETAQKL 932
            + + + V +  +  +    + + G  D +   +   G     + D+KTG  P+   A + 
Sbjct: 1015 ARDPVAVEVSVETPVAD--LVVRGRVDAVFAAVGADGRTRWDVVDWKTGRPPEG-EAARA 1071

Query: 933  IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
             D QL++   A     +  +    V+  F+     +          +   
Sbjct: 1072 RDVQLAVYRLAWSR--WRGVPLEDVSAAFFYASTGETVRPVDLLGAEDLE 1119


>gi|116619174|ref|YP_821330.1| ATP-dependent nuclease subunit B-like protein [Candidatus Solibacter
            usitatus Ellin6076]
 gi|116222336|gb|ABJ81045.1| ATP-dependent nuclease subunit B-like protein [Candidatus Solibacter
            usitatus Ellin6076]
          Length = 987

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 112/893 (12%), Positives = 238/893 (26%), Gaps = 137/893 (15%)

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVL-------PGLDCHIPTAIWNTITEKSTNITSS 284
            +AG  G   A A     +  +  GA  +       P L   +             +  + 
Sbjct: 102  VAGFPGFPRALAETFEELRLNGVGAEQVRGCGESGPDLALLLAAYEGELAARGFADHAAR 161

Query: 285  NTTYSTHPQYSLAK---LLDFLDIKREDVKRLGNV---SNEMYGRSMVISKSFLPPDTSD 338
                 T       +   L   L  +    + L          +      S +  P  + +
Sbjct: 162  VQMARTAVAARFRETAVLAIDLAPRTRSERELVAAILRGARAHLELRPGSGAAEPATSLE 221

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
                 +       ++     V +     E  E + IA  +        + + L+ +    
Sbjct: 222  SLQRYLFSTDAVPVRDEDGTVEIFSTSGEALECVEIARRIGARGIGFDECAILLRSPERY 281

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
               V   L R GI    + G             +LL+   +       A  +        
Sbjct: 282  QPLVVEALRRAGIPAHCTRGSRRPD-AAGRSFLALLHCAEERLSASRFAEYLSLGQMPES 340

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
               +  +  +  L   A+ G    ++                        + R   +  E
Sbjct: 341  EEPRTPAAWERLLVDAAVIGGAARWETRLRGLREDFERRYAAAEEEEERARWRQRIDRLE 400

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                    +++ +  L                 +W +      +    D  R L  L   
Sbjct: 401  ALRAFAMPVIERLAALPERANWG----------EWIETLTALAEFTLNDPTRVLELLEEL 450

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            E  + +                   E + ++       +  P+  +   +++ G  E+R 
Sbjct: 451  EPMREI-------------GPVGLGEVLLVLGPRFQQLSSAPEGARYGKVWVGGIEEARG 497

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE--------------KYIGQA 684
            + F  + + G+NEG++P+  A++P L    +  L +                  ++   +
Sbjct: 498  MAFRAVYVPGVNEGLFPRPPAEDPLLLERQREALGIALRAEDTELLGIAAACATEHFALS 557

Query: 685  AHDFEMANGTRHLIYTRSLR------------ENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                ++  G   +    +                      S    R+      +  D + 
Sbjct: 558  YSRLDLLTGRVRVPSFYAFAAHRAAGGSEIDVHEFEKRARSATGTRIGWPAPENAADAID 617

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY---------------------- 770
                           + +       +    L A+   +                      
Sbjct: 618  DAEFDLATLAPLTKGSGQYLKSLPGRAVESLRARWMRWHAPWKAADGLVVDEIGDDALKR 677

Query: 771  --------SFSEIKQLINDPYAVYARRILKLDFIPHFK--KDPDRTDRGTLFHNIITELI 820
                    S S ++Q    PY    R IL L  + +    +  D   RG LFH +  EL+
Sbjct: 678  YRLGARAWSPSTLQQYARCPYRFALRGILGLRAVENPTGIQRMDPAQRGELFHRVQFELL 737

Query: 821  KKRINKNT--------PEINHLMKQIIDSHFE--KENLPPHIDIIWRHLFHKI---SHSF 867
            +   ++                +  +++      +  L P I  IWR     I      +
Sbjct: 738  RDLASRELLPVSPATLAGALDRLDAVLEDVAAKAEAELAPAIPQIWRGEVQAIRADLRGW 797

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIESI--------------GIHLTGFADRIDLLKSGFV 913
            L+ +    +     F  +   +   +               G  L G  D ++   SG +
Sbjct: 798  LQEKALRDADWTPQFYELSFGLKDPAGRDPRSRKDAVEVEGGYRLQGSIDLVERHPSGVL 857

Query: 914  DITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
             + D+KTG  P+ +  T       Q  L A A +A             L+Y  + Q ++ 
Sbjct: 858  RVVDHKTGRVPEPKPDTVGGGEALQPLLYALAAEAIVGE---PVSSGRLYYATIAQNYRT 914

Query: 972  DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
              +  +       +   + +         +++G  P        +      +Y
Sbjct: 915  IDVPLNDWTRRRMQHVLEIIDG------AMRDGFLP----AAPRKDGCKGCDY 957


>gi|257456391|ref|ZP_05621587.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
 gi|257446051|gb|EEV21098.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
          Length = 919

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 100/810 (12%), Positives = 209/810 (25%), Gaps = 82/810 (10%)

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDF-LDIKREDVKRLGNVSNEMYGRS---MVISKSF 331
            EK      +     +   Y L K     L+  R             + +    +      
Sbjct: 129  EKRAAQHKTGHDAESADLYILKKAYTEFLETHRLFEPSWAGAEFIPHAQQYILLYPELME 188

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKS 389
               +  D+       + +P          LI+    REE  S  +A+   L         
Sbjct: 189  DFDEYRDLLEERPELSVLPAPAFNAGTTPLIQFGTMREEIRSTVLAVEQLLTSGVPADDI 248

Query: 390  AL-ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            AL I     +   +K E     I  +   G  L       + T L   + +   F ++  
Sbjct: 249  ALSIAGIEEVVPYLKREFALRNIPAEFRLGFKLGEQQAGLLFTLLEQCVQEHYSFGSLKP 308

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            L+ +P   +  P++       A+    ++ N             + + A +    + PH 
Sbjct: 309  LLLNPHIPWKHPQQ-----IQAVINFGIKNNCLVSWKDGEHYKNIWKEAFKLPIPYNPHS 363

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                 + +KE A   +   ++    LV  KT        +            L       
Sbjct: 364  SVEAEQAEKEQAKDWLLPFMKAAERLVQAKTFSEVQRQYILFR------TQYLNIDGFSF 417

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                         + L+ L     +                T  +    +         +
Sbjct: 418  EDNAVIGRCVTLMQELTQLEQDFADCLPAQP------YRFFTAQLA-REIYVPQNTGRAV 470

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK---YIGQAA 685
             I     +    F    +   N+        K PFL +  +  L +   +    +    A
Sbjct: 471  SIFPFRVAAATPFAHHFVLNCNQKASRVIYQKLPFLRKDKRDVLGVVEKDATQAFFAVYA 530

Query: 686  HDFEMANGTRHLIY--TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL---- 739
                +        +          I    S              F   +      L    
Sbjct: 531  EYGAVRFSASEQTFAGFTVSNGIFIALAPSPDFDESDSFLQEYHFFKREYDSPAALYSVQ 590

Query: 740  ----DWTRKLDYTTKQPHYKRP-----------KPFPPLEAQPRTYSFSEIKQLINDPYA 784
                +    +           P                        S S +      P  
Sbjct: 591  KTGFEQFASIKKERGFSFLTEPFNGSLPVLSEKLKAGHYTDGAFRISQSGLHLFSGCPAQ 650

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM---KQIIDS 841
             +    L +D      +  +    G + H I+  L ++    +   I+  +   ++  +S
Sbjct: 651  WFLSSALSIDEEDTDAELFNPRYIGIICHRILERLYQRIRETDRVFISAHLADYREWAES 710

Query: 842  HFEK---------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
             F +           L        +    K     L  + +         +    ++   
Sbjct: 711  IFNETVHSQTDFRGPLAAPFIESIKKRSLKSVDFVLTFDAEKLDGYAPYLME--GELQHR 768

Query: 893  SIGIHLTGFADRID-LLKSGFVDITDYKTGDNPKKETA--QKLIDPQLSLEAAALKAGSF 949
            +  I   G  DRI      G   I DYKTG  P       + + D Q+ +     +    
Sbjct: 769  NGDILYHGLVDRIAYQEAEGRAVIIDYKTGKVPSATDYTSEAMRDFQMPMYIFLAE---- 824

Query: 950  SQIDCRKVANLFYIRLKQ--------KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
                 ++V + F++ + +          ++    + +   + +E  E S++  ++I    
Sbjct: 825  -NRLKQEVLHAFFLGITKEERRYIVNDKEVIPQDSSRSSKTREEF-EPSIQAFLQIAQEY 882

Query: 1002 QN--GEQPFISHLRLSEKSNIQSEYDHLAR 1029
                G + F     +  +  +   +  + R
Sbjct: 883  AQQVGMEDFRKPAAVQWQDCMGCPFHTICR 912


>gi|119715745|ref|YP_922710.1| UvrD/REP helicase [Nocardioides sp. JS614]
 gi|119536406|gb|ABL81023.1| UvrD/REP helicase [Nocardioides sp. JS614]
          Length = 1073

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 109/1045 (10%), Positives = 260/1045 (24%), Gaps = 151/1045 (14%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
             V     T +A  ELR    +       +    ++ GD   +     +         +  
Sbjct: 67   EVLGLTFTTKAASELRQRIRQALKAAGALEEPEEAPGDGQSDVLEPTVATYNAYAAGLLT 126

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA--KNLADIIDIIETEE 163
               L                           +  +   +       +NL  +   +    
Sbjct: 127  DHGLRIGHEPDTRVITDAARYQLGARAVDRYTGDVRYLSDHPETVIQNLLALDSAMSEHL 186

Query: 164  KKWEDLHALKNEKYGMWWLLAADF-------------------------LKIASKYWTER 198
               + +  +  E    +    A+                          L    + +   
Sbjct: 187  VGPDAVREIDTEACRGFEAALAEEVAGKNRVTYREAIEKAISAIDRRGELLGLVEAYRRL 246

Query: 199  LVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
              +L             ++A  + +   L +     +++     +  A A ++S + +  
Sbjct: 247  KRDLGLMDFSDQIELGARLASEQPDVGELERSRFKVVLLDEYQDTSVAQAVMLSRLFS-- 304

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
             G  V    D +     W   +  +    +     +         L          ++  
Sbjct: 305  GGHPVTAVGDPNQAIYGWRGASVSNILNFADTFPAAGSRAVPTYPLTVNRRSDARILEVA 364

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
              ++  +Y                       +E  +   +     V     +   +E   
Sbjct: 365  NRLAAPLYE------------------KYGQVEPLVAKPEAETGTVTTQVFETHADELAW 406

Query: 374  IAIALRMSLDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            +  A++ + +            ++T D   A  V   LT  G+ ++I     L      +
Sbjct: 407  LVGAVKEAHEGLPADGGWAQIGVLTRDNAHAEDVFDALTSAGVPVEIVGLSGLLRLPEVA 466

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
             + + L  +  +    A+ TL+  P  ++    + L         +A R  + +      
Sbjct: 467  EIVATLTLLHDVTANAALLTLLTGP--RWAIGPRDLRLLGRRALEIAGRHGRGADAASIT 524

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
              L+                      E       L     +    L        +  G  
Sbjct: 525  DQLLEIADGIDPAELPSLDDALADPGEHAYSPEAL-----ERFGLLSAELRMLRTYVGEP 579

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             +    ++  T   +V L            +         ++       +   A+     
Sbjct: 580  LLDIVRRIIDTSGTDVELGSAVSPAAAARRDNLDLFVKAVAEFQAVDGDVTLPALLAYLT 639

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF----- 663
                           ++ ++ +L    ++ L +D++ L G+ E  +P N ++  +     
Sbjct: 640  AEDDQGNGLDVATPTEADSVKLLTVHRAKGLEWDSVFLVGVCETRFPSNRSRTLWTSSPA 699

Query: 664  -LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH----------LIYTRSLRENNIPTIA 712
             L   ++ D           +AA D   A    H          + +TR+ R  ++ +  
Sbjct: 700  ILPAPLRGDAGDLPQLAGHDKAALDAYRAATRDHDAEEELRLGYVAFTRAARRLSVTS-- 757

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              W  R    G + +   ++ +   + +    L    K          P   ++P   + 
Sbjct: 758  YLWSPRATPFGPSAYQQVVRDQLHDWAEPPTWLARPEKGDPNPYDAVDP---SRPWPATG 814

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL--FHNIITELI-KKRINKNTP 829
            +  +  +     + A R ++           D  +   +  +   +  L+ + R +++T 
Sbjct: 815  TGREAALR----IEAARRVREVDAAAVDAGLDMIETARVAEWDAELERLLAEARRDRSTD 870

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHL--------FHKISHSFLEHEEKIQSS---- 877
                L   +  +   +    P                   +    F    E         
Sbjct: 871  LAVPLPPSLSATALARLREDPETFARELARPMPRPPSSAARFGTRFHAWVEARFGQQDLF 930

Query: 878  ---------------------------------IEKIFVNIPAKMAI---ESIGIHLTGF 901
                                                  V  P  + +      G  + G 
Sbjct: 931  DYGDLPGRADAGIDDDSDLKELIATFEAGPFATRTPHQVEAPFALVLRHPGGPGQVVRGR 990

Query: 902  ADRI--DLLKSG-FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
             D +  +    G    + D+KT      +        QL+L   A        +   +V 
Sbjct: 991  IDAVYAESTPEGDGFLVVDWKTNRAATADP------LQLALYRLAWAE--LHDLPLERVR 1042

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSA 983
              FY     +        D+    A
Sbjct: 1043 AAFYYVRTGEVVEPPDLPDRAALEA 1067


>gi|268319454|ref|YP_003293110.1| ATP-dependent nuclease subunit B [Lactobacillus johnsonii FI9785]
 gi|262397829|emb|CAX66843.1| ATP-dependent nuclease subunit B [Lactobacillus johnsonii FI9785]
          Length = 1158

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 112/1030 (10%), Positives = 255/1030 (24%), Gaps = 168/1030 (16%)

Query: 46  SVTIYVPTK-------RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98
            V I VP         RA+ +L              L  I S   +           +  
Sbjct: 32  DVFIIVPNHIKFTTEVRALSKLS-VLTNKKQVAVNKL-HILSFSRLAWYFLR---DEAIK 86

Query: 99  LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           L   + +   ++ L +++   + +L                         +  L  + + 
Sbjct: 87  LPQILDDAASVMLLEQIVKDHQGELKLFQNQTQVT---------------SGALRQMYEA 131

Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
           I +      +L  +  +K           L+I    + ERL E  A+        L+   
Sbjct: 132 ILSVRAGNIELDNIDEKKLNEETSYKIHDLRIIYDEFIERLSEKFAT--KDEMQLLLNEF 189

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                  +      +  +         +  ++                       +  K+
Sbjct: 190 LAKSNNLSTMEFYFSDFSHFSLQELTSVRLISKKAKNTT----------------LAFKT 233

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 N        Y + + +  L     +        +       +   S        
Sbjct: 234 KIGKIDNNAEPGDYDYVVQRTIGQL-----EHFWQNQQLDYQTQEYPLTQTSPSSLLNGV 288

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD 395
              T   + ++         +  ++AD+   EA  +A  +   +   +   +   ++  +
Sbjct: 289 WTKTSGFDERLSKF------LQPVKADSRYAEAYFVARTIYQQVALNNYRYQDFLVLAPN 342

Query: 396 RNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
            +         L +  I         +       ++ +L     +      +  L+K  L
Sbjct: 343 LSEYETYLTPILRQNQIPFFNDLQREMKYHPLVVVVENLQQIFKRGFQTDNVIALMKTQL 402

Query: 455 A--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
               +           + LE   L                    +    +        + 
Sbjct: 403 FIPDWYKNSARYQNDVDLLENFVLAHGIKGKLWT------KSLKSFVDADVIALDKSEKE 456

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS--DWTKLTVTCLQNVCLDEHR 570
            EE   L    +D + +    L   +  +       +    +     +   +    D   
Sbjct: 457 VEELDRLREYFIDALTKFFEQLDKEEDPQAGVTVFWNFLIKNHVAKRLESWRKEANDTGD 516

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
                  E+   TL+ L    +   +  K +  ++ D++                  + I
Sbjct: 517 LQLAQQPEQVWSTLTDLLKDYLLVAT--KFSVDQFFDLLISGFSEANFSQIPSTLDAVNI 574

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYIG 682
                 +   +  + + G      P+      F S      LN        L+  +K   
Sbjct: 575 SELGMVQGQGYKRVFIIGATSTNLPQIEKIPGFFSSENLEQLNEGNEANGYLEDQQKINN 634

Query: 683 QAAHDF---EMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ-- 736
              +      ++  +  +  +  +    N     S + ++LL L   D F          
Sbjct: 635 LDQNYQFGNALSLASDKIYISYPVINTANEQLEPSIFYKQLLKLTRADEFSQHDLPQNNG 694

Query: 737 ----------------------CYLDWTRKLDYTTK-----------------QPHYKRP 757
                                    D    LD T +                  P    P
Sbjct: 695 DVLTFITNPEASLGYLTYLKNKAATDIESLLDMTEEKIGEIAKNVLEGSSFKNIPQDLSP 754

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
                L       S S+++    + +  +    L L     F+ + D    G  +H    
Sbjct: 755 DLAQQLYGDRIETSVSQLETYYQNSFEYFLNYGLHLKKR--FENELDVIQAGNYYHETFD 812

Query: 818 ELIKKRIN------KNTPEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHS 866
            L+K+           T E    +   +    ++     + L    +    H   + + +
Sbjct: 813 YLVKRIKEKKLNFADLTEEKLGELLIEVREELKEKGRYRQLLNDPFNKYLFHKLDQTTAN 872

Query: 867 FLEHEEKIQSS--IEKIFVNIPAK--MAIESIG------------IHLTGFADRIDLLK- 909
              +     +       +  +       +  +             + L G  DR+DL + 
Sbjct: 873 VAHYWHSNVNKTIFRPQYSELSFGKNQKVSGLSYSWKDDNNKKKIVDLRGKMDRVDLAQV 932

Query: 910 SGFVD--ITDYKTGDNPKKETAQKLI-----DPQLSLEAAALKAGS--FSQIDCRKVANL 960
           +  V   + DYK+      +     +       Q+      LK  +  F+Q     V   
Sbjct: 933 NDRVLGEVIDYKS----SAKKFDLGLFANGISMQMISYLEVLKNNNKFFAQGKDLDVLGA 988

Query: 961 FYIRLKQKFK 970
           FY  +    +
Sbjct: 989 FYQNITSSLE 998


>gi|241761923|ref|ZP_04760008.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
 gi|241373603|gb|EER63175.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
          Length = 1162

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 105/828 (12%), Positives = 207/828 (25%), Gaps = 102/828 (12%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSP--------VGYQIALMRAEAEHLMKGTK 227
            ++  + + A    +  S+ W +   E                 +   +     + +  T 
Sbjct: 335  EFSQFAIAALRTGQAYSQAWQQTKKESGLVDFNDMIETSVALLRTPGIGEWVRYKLDRTT 394

Query: 228  GPIIIAGSTGSIPATARLMSTVAN----------HPNGAIVLPGLDCHIPTAIWNTITEK 277
              I++  +  +      ++S +A                 +    D       +     +
Sbjct: 395  DHILVDEAQDTNIFQWAIISALAEDFFSGESAKSVEASRSIFAVGDFKQAIYGFQGTDPQ 454

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
            +           +         L      R     L  V   +           +     
Sbjct: 455  AFVDARDYFNDKSQGSGREILDLSLNRSFRSTPPILAIVDQMLADIESSCGGIGISQQAL 514

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS------------IAIALRMSLDEN 385
                +   +     +          E +N  EE  +            +AI L   ++  
Sbjct: 515  QPHQSARSDLGGSVVLWQPISDYQEEGENTSEETDADDEEQLENGELELAIRLARQIETW 574

Query: 386  ------------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
                              +    L+     LA  +   L    I +     + L+  L  
Sbjct: 575  LNPKTPLYLPALGRNAAPRDILILVRNRGRLASLIVGCLHAQKIPVAGLDRLTLTAPLAV 634

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            S L S +  + + +D + +A L+  PL  +     Y   AK A +       + S    +
Sbjct: 635  SDLLSAIRFVLQPDDDLTLACLLVSPLIGWDQERLYRLAAKRAKKESLFDRLRKSEAEKE 694

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
               ++ + ++     T     +  LS + +    LL     +   P+             
Sbjct: 695  TWDIIREWLSKADFITPYRFLEMLLSGKGEGRRKLLERLGEEARDPINELLNAALLLE-- 752

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
               S+ T      L              WF+     +    S    T   +  +  + + 
Sbjct: 753  ---SETTPSFQRFLD-------------WFDSGDVEIKRDPSVRQNTVRIMTVHGAKGLQ 796

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                ++   T  P         I+              L   N  +   +     +L   
Sbjct: 797  APVVILADATRDPHQSNGFRKEIITW-----------PLDEANAPIPMPSNDDIAYLPSD 845

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
                +N K A+         +  A      L+ T  L                     T 
Sbjct: 846  FGDIINEKKAKDLQEHWRLLYVAATRAEEYLVITGHLGSRAKNIPPKDSWYACATRAITA 905

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAV 785
                 ++            +   K     + +P  P EA P   +    ++     P   
Sbjct: 906  IGIAWQEDAMWQQKAVYHWEGRKKVTDIPKKQPIFPKEAMPSWINNEIPEEPKPAYPLRP 965

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII---DSH 842
                       P          RGTL H +   L    + +        ++      D+ 
Sbjct: 966  SDLVKDNTSNPPPDGGSITAAKRGTLLHALFERLPMLPVEEREKAGLRWLETSAGVKDAA 1025

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                 +    D +   ++  I               EK     P    +      ++G  
Sbjct: 1026 LRNSLIKDACDAMSNPVYRDI-------------FSEKALAEAPIAAKV--GEHVISGTV 1070

Query: 903  DR--IDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
            DR  ID  K   V I D+KTG      KE   +    QL+    AL+ 
Sbjct: 1071 DRLWIDRNK-KRVHIVDFKTGRRVPATKEQVSEAYQRQLAAYVVALEK 1117


>gi|297562750|ref|YP_003681724.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
            43111]
 gi|296847198|gb|ADH69218.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
            43111]
          Length = 1150

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 109/1069 (10%), Positives = 267/1069 (24%), Gaps = 136/1069 (12%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVV---EEKFTADLLLSYNLN 100
             +     T++A  EL     +     + +  LP     G+        +   ++  + L 
Sbjct: 91   QILGLTFTRKATAELAERVRKRLEQLRATEQLPEELLDGEPTVSTYNAYAGRIVADHALR 150

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---- 156
              V    RLL   +   I    + +    +     +         + L+  +AD +    
Sbjct: 151  EAVEPTSRLLSEGQAWQIAARVVGEYDGPMD-LITVGADTVTRRVLELSGQIADHLTTTE 209

Query: 157  -----DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
                                    +  +   L  + L    + +        A       
Sbjct: 210  QVRGIGRWLRAAVDALPRKPAVPTRNLLNAQLRREQLLPLVEGYEHAKHVREAMDFGDQV 269

Query: 212  IALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                R      E   + +G    +++     +  A   L+  +     G  V    D   
Sbjct: 270  SLAARIAQNHPEVGLIERGRFRVVLLDEYQDTSHAQLVLLRALFG--EGHAVTAVGDPCQ 327

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF-------LDIKREDVKRLGNVSNE 319
                W      +     ++   +     S+ +L          L++ +   + L   S E
Sbjct: 328  SIYGWRGAIAANLANFPNDFPAAPGRAASVRRLATSFRNGERILEVAKHISEPLRAESAE 387

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL- 378
            +       ++       + +      E +    Q       L  A      A +    L 
Sbjct: 388  VPVLYPGPARRGRGAVRTGLFIGQREEARWIAEQVAG---YLRAAPGRAGSATTAPDGLP 444

Query: 379  --------RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
                          +    A++   R+    ++  L    I +++     L        +
Sbjct: 445  WPPGESGGAADGGVSPGDVAVLCRKRSQFPAIREALEELDIPVEVVGLGGLMMVPEVRDI 504

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             + L  +   +    +A L+  P  + G  +     A+ A      R +    +      
Sbjct: 505  IATLRVVHDASAGNELARLLTGPRWRIGPRDLAALGARAAELARQTRRDLTGPEPDQSAE 564

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
               D +     +          + +D   A        + +  L     +     G    
Sbjct: 565  --DDILRRTVLDLTAESGSLVDAVDDPGPAERYSATAYERLGRLAEELRSLRKLVGQPLP 622

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA-NAIEWIDII 609
               T+       ++ +        L    +         +   +       + + ++   
Sbjct: 623  DLVTETERMLGLDIEVGARSGRDPLSARADLDAFVDHAVRFAGSSEDPTLGSFLSYLRAA 682

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN-------- 661
            +    G     ++  S T+ ++    S+ L +  +++ G++ G +      +        
Sbjct: 683  SERESGLAPGERVGGSDTVKLMTVHASKGLQWPVVVVPGVSGGKYAPLFPTSLSEGDMWI 742

Query: 662  ---PFLSRVMQ-----------------SDLNLKTAEKYIGQAAHDFEMANGTRHLIYT- 700
                 L   ++                         E+++ +      +A          
Sbjct: 743  KGEHLLPYRLRGDRQNLPELLAVDKKGIEAFKEAERERHLLEERRLAYVAVTRASFALLC 802

Query: 701  ---RSLRENNIPTIASRWLQ--RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                   +       S +L+  RL   GG     + + R     +   + D  T     +
Sbjct: 803  TGHWWGTDAASERGPSPFLEEIRLACEGGAGEVAHWEPRPDPDDNPYEEEDDGTAVWPPQ 862

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL---- 811
                  P E         + +  I +  A+  R   +L        +      G      
Sbjct: 863  EDDGSGPPEEGAEPDRPRDRRAQIAEGAAMVERARARLLAGEADPAEEAAPPPGLRRRIG 922

Query: 812  ----------------------------FHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
                                            ++      + ++   +   +++ +    
Sbjct: 923  GWERDTELLLAHRRAEGPGSGDGTVQVELPAHLSVSSMVWLARDPSALARQIRRPLPRPP 982

Query: 844  EKENLPPHIDIIWRHLF----------------------HKISHSFLEHEEKIQSSIEKI 881
                        W                            ++      EE    S   +
Sbjct: 983  APHTRRGTAFHAWLEQRFGQRAALLDELPGAADETAGQDEDLADLQSRFEESEWGSRVPV 1042

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLK-SGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
             V +P +  I      + G  D +     SG  D+ D+KTG  P     ++ +  QL+  
Sbjct: 1043 EVEVPFETVIGDR--LVRGRMDAVFHDPASGRYDVVDWKTGSPPGNGPERRAVGVQLAAY 1100

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
              A    +   ++    A   Y+R     +   + + +   +  +   +
Sbjct: 1101 RLAWADLAGVSLEEVS-AAFHYVRAGLTVRPADLLDAEGLAALIDAVPE 1148


>gi|326334226|ref|ZP_08200449.1| helicase, UvrD/Rep family [Nocardioidaceae bacterium Broad-1]
 gi|325948017|gb|EGD40134.1| helicase, UvrD/Rep family [Nocardioidaceae bacterium Broad-1]
          Length = 293

 Score =  118 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 89/295 (30%), Gaps = 25/295 (8%)

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
            +            L   T      RP+  P       T S S ++ ++  P   +  R  
Sbjct: 5    RIALAADPSTWWGLRAPTYASAAVRPEDRP------ITLSASALEAILTCPAQWFLAREA 58

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
                     +       G + H I  +L +  ++  T E        +    E       
Sbjct: 59   GGAVTDSSSQG-----FGKVVHAIAEQLARGDLDAATVEDLMPFVDEVWGRLEFRTPWSA 113

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE---SIGIHLTGFADRIDLL 908
                      ++   FL        +   I         +       + L G+ADR++L 
Sbjct: 114  AREREAVR--EVLARFLTWHR-RPGARTVIGFEEQLTAKVSLPSGETVRLNGYADRLELD 170

Query: 909  KSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV-ANLFYIRLK 966
            +SG + + D KTG   P  +  ++    QL L   A++ G+ + +           I+L+
Sbjct: 171  ESGRIVVVDLKTGKYPPTAQEVKEHG--QLGLYQLAVEHGAAASLAEGATSGGAELIQLR 228

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
                        +  + +    + +  L + V  ++  E  F++           
Sbjct: 229  HPAGSGSELPKVQVQAPE--PPEIINQLEKAVATVRAEE--FVARPGKQCDRCQF 279


>gi|15803341|ref|NP_289374.1| exonuclease V subunit gamma [Escherichia coli O157:H7 EDL933]
 gi|15832933|ref|NP_311706.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. Sakai]
 gi|168764651|ref|ZP_02789658.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4501]
 gi|217327056|ref|ZP_03443139.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            TW14588]
 gi|12517307|gb|AAG57933.1|AE005511_1 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Escherichia coli O157:H7 str. EDL933]
 gi|13363151|dbj|BAB37102.1| DNA helicase RecC [Escherichia coli O157:H7 str. Sakai]
 gi|189365393|gb|EDU83809.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4501]
 gi|209761100|gb|ACI78862.1| DNA helicase RecC [Escherichia coli]
 gi|217319423|gb|EEC27848.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            TW14588]
 gi|320189153|gb|EFW63812.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. EC1212]
 gi|326339108|gb|EGD62923.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. 1044]
          Length = 1122

 Score =  118 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 115/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++  H                       
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDHELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
              + L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NALFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|259502071|ref|ZP_05744973.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041]
 gi|259169984|gb|EEW54479.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041]
          Length = 1250

 Score =  118 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 121/1076 (11%), Positives = 255/1076 (23%), Gaps = 188/1076 (17%)

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
             + SL  +          L     P +S I   + +A+++      L             
Sbjct: 74   QVLSLSRLAWYLLRDTPALQR---PRLSKIGLTMLVAKVVQDHAADL------------- 117

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW-------WLLAADFLK 189
             L  S A      + L D +  +       +DL AL  +            WL     ++
Sbjct: 118  QLFASEAQQPGFIQKLTDQLTELANANVSADDLTALLQQAQHDENAGINQAWLAKMHDVE 177

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            +    + ER+               +    +      +    I       P   +++  +
Sbjct: 178  LIYHAYEERV--QGRFLGNTELYQQLAQFLQSQPAAKQMHFFIDRFAQFTPGEQQVVDAM 235

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
              +     V   LD   P       +    +                 +L DF     ++
Sbjct: 236  ILNGASTTVSFVLDRGYPDQSHPDQSALPGSTDLFYPAAM-----QYHRLWDFARQHPQE 290

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            V  + NV      R      +              L+    + Q   +D+  I   N R 
Sbjct: 291  VDLVPNVLVATKDRVSPTLTAVDRFF--ADYIKKPLDLTSSDQQVDPADLQFITTVNRRT 348

Query: 370  EAISIAIALRMSLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTL 425
            E   +A  +   +       +   +++   +  + +         I +       +    
Sbjct: 349  ELERVATMIHQLVATKGYRYRDFLVLSRHLDKYQTLLAPIFAAHQIPVFNDHERRMDNHP 408

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVK-------HPLAKFGFPEKYLSRAKNALELVALRG 478
              ++LT+L N          I  L+K       +P                    +    
Sbjct: 409  LVTLLTALFNLPLYRYRTADIMQLLKTWLLAEYNPETGDYQALDQDVVFATENWCLKRAI 468

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA-------------VLLVD 525
                  +           +T      +      +     +                 L  
Sbjct: 469  EGQRAWVDAASPFWQVGDSTAAPVNQLQEQLEHVRTFVADRIITFFADLKTVTTGRELAA 528

Query: 526  HILQCI--TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW----FEE 579
               Q +    +V   T+      + ++ D  +         C      +  L       +
Sbjct: 529  RTYQFLVDNGVVKRLTDWQKYQSSRNL-DLARQPQQVWGTFCQILDEYVQLLGDTPVNAD 587

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                  + FS++++ G    A   +    + +++  ET   + +    +F++G+ +  + 
Sbjct: 588  NFTATLTNFSELLQAGFA-AAQYSQIPATLDQVVVSETGIVQNQDRKIVFLIGSTDDVMP 646

Query: 640  NF------------DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT----------- 676
                          + L         +     ++   +        + T           
Sbjct: 647  EVQQQESLLTDQDKELLANYLDPATQYLPAGPRDQLRTEPFLHYSGMLTGTEKLIMMAPT 706

Query: 677  ---------AEKYIGQAAHDFEMANGTRHLIYTRS--LRENNIPTIASRWLQRLLVLGGT 725
                        Y+   A  F        L+ + +   R  +  +  +  L +L+ +   
Sbjct: 707  ASDDDQPLTPSAYLTDMARYFAQPVTAVPLVASPAGQQRVPDYVSTPAATLSQLVQVERQ 766

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770
               D  K        W         +    R  P    +   R                 
Sbjct: 767  ARNDQPKGPIVLAPGWQAVRQALVDEIARLRQAPQAADQRAGRELAARLKLVAAGFNYHN 826

Query: 771  --------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                                      S S+++    +PY  + +  L L          D
Sbjct: 827  QVDDLGEQLAAALYLRHKHDQQILYSSISQLQDYYVNPYEYFLKYGLGLKKRDQLTMSVD 886

Query: 805  RTDRGTLFHNIITELIKKRINK------NTPEINHLMKQIIDSHFEKENLP--------- 849
                GT FH  +   +               E    +   I                   
Sbjct: 887  --RIGTFFHKAMEWFVSAVNADQQLSFAGLAENPAQLNAFITRALAAAKDDQPDLAILTA 944

Query: 850  ----PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--------------KMAI 891
                            +   + L  + K  +    +   I                +  +
Sbjct: 945  SSHQAAFQYQQLTGIVRTMLTILCWQAKYTA-ARPLDTEIRFGRLGAAREDDLQPLEYPL 1003

Query: 892  ESIG--IHLTGFADRIDLLK-SGF--VDITDYKTG-DNPKKETAQKLIDPQLSLEAAA-- 943
            +     ++L G  DRID L       + + DYK+G  +    TA   +  QL     A  
Sbjct: 1004 QPANTHVYLRGRIDRIDQLSQDNKDYLTVVDYKSGNRSFDLTTAYYGLSLQLLAYLNAIS 1063

Query: 944  -----LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
                 L A         ++A   Y+ L                    + +   K L
Sbjct: 1064 SNRQQLPAQLNPAAADLQLAGALYLHLSNPVINAAKLKAGTDLDTVRMQQHQYKGL 1119


>gi|169237545|ref|YP_001690749.1| putative helicase [Halobacterium salinarum R1]
 gi|167728772|emb|CAP15640.1| putative helicase [Halobacterium salinarum R1]
          Length = 1211

 Score =  118 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 83/858 (9%), Positives = 203/858 (23%), Gaps = 120/858 (13%)

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKG 228
                  + L            +T      +           +     +       +    
Sbjct: 341  EANSAHYALALMRAFDDVLAAYTAEKDRRDTLDFPDVIETTLEFLRANDAVTERLREQFA 400

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAI--VLPGLDCHIPTAIWNTITEKSTNITSSN- 285
             +++     + P    L+  +     G    V    D       +      +        
Sbjct: 401  AVMVDEFQDTDPRQWELVKLLTGVDEGTASNVFLVGDEKQSIYGFRGADVTTFGNARREL 460

Query: 286  ----------------------------TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
                                              P   L +L ++L     D        
Sbjct: 461  QTVNEARGVDDVPDGEAESPTALELSGNFRTLDEPLSFLNELFEYLLQPEGDTHEPYEAP 520

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
             +         +       S        +                 A +   EA + A+A
Sbjct: 521  PQELTTQRDRIEDIEGLTGSVEYLAVPDDADTAAELFGDDHPVAEGALDHTIEAEAQALA 580

Query: 378  LRMSL-----------------DENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
             R++                  +     +A++   R    R +  L  + I   +  G+ 
Sbjct: 581  ARLTHLFDDPPQVQDPDTGVHREATPDDTAILLRRRTHLDRYQRALEEYDIPYTVVGGVG 640

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
               T     LT+LL  +    D +++  +++ PL  F       + A+            
Sbjct: 641  FYDTPEVQALTNLLRVLGDPEDDVSLYGVLRSPLFGFADDRLAPAVAEAD---------- 690

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                   L      ++A   +        S  +   +   +     + + I       + 
Sbjct: 691  --SVWDALAETDDPQLADAFDLLSTWRTLSGCAAPSENGVLPWNRLLSRVIDDTGYLASV 748

Query: 541  KNSTCGNLSISDWTKLTVTCLQN-----VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                 G  +I++  K                       +   E + +   +      E  
Sbjct: 749  SADERGRQAIANVEKFRDQVRTWSENGVHTAAGLLHRIDRQAEIDPREGEADIPGDAEGV 808

Query: 596  SCIKANAIEWIDI----ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
              +  ++ + ++     +  L         ++    + ++   +    +   +   G  +
Sbjct: 809  RIMTIHSAKGLEFPIVTVPDLGSDLNFGRSVDDHGYVRLVDGTD----DAPPVPAVGGPD 864

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
                 +  K        +     + AE         +     TR  +      + ++   
Sbjct: 865  PGDAFSIEKTAVHEYADRQSRPQERAESK----RLLYVACTRTRDHLLLCGTHDIDVDES 920

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH--------YKRPKPFPPL 763
             +  L         D + +  +          +     +            +RP      
Sbjct: 921  GAIELGEPAAFDDADRWRDWVQPALLDGALVAEAIRDGQARGEMDEASYTVRRPPRPVDW 980

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRIL---------------KLDFIPHFKKDPDRTDR 808
                     +    + + P    A+RI                              T  
Sbjct: 981  HTDDDAVDPALEISIPSPPSLAPAKRIAATTLVNAVADASTDGHSYSQREESAGLSPTTF 1040

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            GT+ H I      +        + H + ++      + ++   +D          +  F+
Sbjct: 1041 GTVVHRINE---LRPPRDEWSTLIHRLSRMTGEVPTEADVREAVDH------AADAVEFV 1091

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG--DNPKK 926
            +H  +  S ++++         I+     + G+ DR+ ++      I DYKT        
Sbjct: 1092 DH-IESGSQLQEVHDEYSVVARIDES--RIAGYIDRLLVMPD-AFHIIDYKTNDLSATTS 1147

Query: 927  ETAQKLIDPQLSLEAAAL 944
            +       PQ+   A AL
Sbjct: 1148 DELADHYRPQMLAYALAL 1165


>gi|260752463|ref|YP_003225356.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
            mobilis NCIMB 11163]
 gi|258551826|gb|ACV74772.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
            mobilis NCIMB 11163]
          Length = 1162

 Score =  118 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 105/828 (12%), Positives = 205/828 (24%), Gaps = 102/828 (12%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSP--------VGYQIALMRAEAEHLMKGTK 227
            ++  + + A    +  S+ W +   E                 +   +     + +  T 
Sbjct: 335  EFSQFAIAALRTGQAYSQAWQQTKKESGLVDFNDMIETSVALLRTPGIGEWVRYKLDRTT 394

Query: 228  GPIIIAGSTGSIPATARLMSTVAN----------HPNGAIVLPGLDCHIPTAIWNTITEK 277
              I++  +  +      ++S +A                 +    D       +     +
Sbjct: 395  DHILVDEAQDTNIFQWAIISALAEDFFSGESAKSVETSRSIFAVGDFKQAIYGFQGTDPQ 454

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
            +           +         L      R     L  V   +           +     
Sbjct: 455  AFVDARDYFNDKSQGSGREILDLSLNRSFRSTPPILAIVDQMLADIESSCGGIGISQQAL 514

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS------------IAIALRMSLDEN 385
                +   +     +          E +N  EE  +            +AI L   ++  
Sbjct: 515  QPHQSARSDLGGSVVLWQPISDYQEEGENTSEETDADDEEQLENGELELAIRLARQIETW 574

Query: 386  ------------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
                              +    L+     LA  +   L    I +     + L+  L  
Sbjct: 575  LNPKTPLYLPALGRNAAPRDILILVRNRGRLASLIVGCLHAQKIPVAGLDRLTLTAPLAV 634

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            S L S +  + + +D + +A L+  PL  +     Y   AK A +       + S    +
Sbjct: 635  SDLLSAIRFVLQPDDDLTLACLLVSPLIGWDQERLYRLAAKRAKKESLFDRLRKSEAEKE 694

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
               ++   ++     T     +  LS + +    LL     +   P+             
Sbjct: 695  TWDVIRGWLSKADFITPYRFLEMLLSGKGEGRRKLLERLGEEARDPINELLNAALLLE-- 752

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
               S+ T      L              WF+     +    S    T   +  +  + + 
Sbjct: 753  ---SETTPSFQRFLD-------------WFDSGDVEIKRDPSVRQNTVRIMTVHGAKGLQ 796

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                ++   T  P         I+              L   N  +   +     +L   
Sbjct: 797  APVVILADATRDPHQSNGFRKEIITW-----------PLDEANAPIPMPSNDDIAYLPSD 845

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
                +N K A+         +  A      L+ T  L                     T 
Sbjct: 846  FGDIINEKKAKGLQEHWRLLYVAATRAEEYLVITGHLGSRAKNIPPKDSWYACATRAITA 905

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAV 785
                 ++            +   K     + +P  P EA P        ++     P   
Sbjct: 906  MGIAWQEDAMWQQKAVYHWEGRKKVTDIPKKQPTFPKEAMPSWIKNEIPEEPKPAYPLRP 965

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII---DSH 842
                       P          RGTL H +   L    + +        ++      D+ 
Sbjct: 966  SDLVKDNTSNPPPDGGSITAAKRGTLLHALFERLPMLPVEEREKAGLRWLETSAGVKDAA 1025

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                 +    D +   ++  I               EK     P    +      ++G  
Sbjct: 1026 LRNSLIKDACDAMSNPVYRDI-------------FSEKALAEAPIAAKV--GEHVISGTV 1070

Query: 903  DR--IDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
            DR  ID  K   V I D+KTG      KE   +    QL+    AL+ 
Sbjct: 1071 DRLWIDRDK-KRVHIVDFKTGRRVPATKEQVSEAYQRQLAAYVVALEK 1117


>gi|227823893|ref|YP_002827866.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium
            fredii NGR234]
 gi|227342895|gb|ACP27113.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium
            fredii NGR234]
          Length = 1189

 Score =  118 bits (294), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 104/843 (12%), Positives = 210/843 (24%), Gaps = 66/843 (7%)

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF-LKIASKYWTERLVEL 202
              +  A +LA +ID          D  ++          L     L    +   +R  +L
Sbjct: 324  AMLAQAPHLAPLIDEARQHIVSTADRLSIVRMYEATRAALILAERLNGDYEDLKKRRSQL 383

Query: 203  NASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN------ 251
            +    +    AL+      A   + +      I++  +  + PA   ++  +A       
Sbjct: 384  DFEDLINRTAALLSRSDVGAWVHYKLDQGIDHILVDEAQDTSPAQWTIIQALAADFFAGE 443

Query: 252  --HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH----------PQYSLAKL 299
                +   +    D       +     +  +  S  T                Q S    
Sbjct: 444  TARADDRTIFAVGDEKQSIYSFQGARPERFSRESVLTERRVRAGNKYFSPIRLQLSFRST 503

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            LD L          GN          ++  S        +   DI+  +    +  ++  
Sbjct: 504  LDVLSAVDTVFANPGNAKGLSARNEAIVHASNRIGHPGAVDIWDIIAPEPTTSEDDWT-- 561

Query: 360  ALIEADNEREEAISIAIALRMSLDEN-----------------KKKSALITADRNLARRV 402
            A  +A  ER     +A  +   L++                       L+         +
Sbjct: 562  APFDATPERAPVNILARRIAAVLEDWIGKETVIEKGVRRPMRPGDVIVLVRKRDAFVNAL 621

Query: 403  KLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
               L  R  I +  +  + L+  +    L +L   +    D +++A L+K PL   G  +
Sbjct: 622  TRALKRRGNIPVAGADRLVLTNHIAIQDLLALGRFVLLPEDDLSLAALLKSPLVNLGEDD 681

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
             +   A+ A      +         +                                A 
Sbjct: 682  VFDLAARRAEGESLWQRL-QQLGAEEKSRYCRVVRILAGYGELARDLLPHDFYARVLGAH 740

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                  L  +   V+   ++  T                +  + ++          E + 
Sbjct: 741  GGRRAFLARLGSEVSDILDEFLTFALDHERSGLPGLQAFISTLEIEAPTVKREQDKERDE 800

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
              + ++ +        +          + + +    +  K +      I+    +     
Sbjct: 801  VRVMTVHAAKGLEAPVVFLVDGGGEAFVRQQVSDLRLLEKPQAGGAPVIVPVWRAPGSAS 860

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
            ++LI                  L   M    +      Y GQ  +          +  T 
Sbjct: 861  NSLIAADNERLKRLAEEEYRRLLYVGMTRAADRLIVCGYRGQRQNLDTWHAM---VQGTL 917

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
            +                    G       +        D   K D            P P
Sbjct: 918  AHDPKGRAVPTDFSAGGEEWTGHAWREAPVPVTIPESGDAKSKPDAAASILPPALFTPLP 977

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
            P    PR  + S     I+DP       I+                RG + H ++  L  
Sbjct: 978  PPRRLPRPLAPSGTSVAIDDPDR---EAIVGSALFAEQATPKFSMLRGAILHRLLQVLPT 1034

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                K        + + +          P      R          L+H E      E+ 
Sbjct: 1035 IEEAKRREAAERYLGRAV----------PGWPETERRALTAAVMDVLDHTELQPLFGEQS 1084

Query: 882  FVNIP--AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQL 937
               +     + + S    ++G  DR+ +     V I DYKT        +    +   QL
Sbjct: 1085 RAEVSVMGTLKLGSQEFAISGRLDRLAIAGD-TVTIADYKTNRDVPASVDDVPSVYRRQL 1143

Query: 938  SLE 940
            ++ 
Sbjct: 1144 AIY 1146


>gi|167648808|ref|YP_001686471.1| double-strand break repair helicase AddA [Caulobacter sp. K31]
 gi|167351238|gb|ABZ73973.1| double-strand break repair helicase AddA [Caulobacter sp. K31]
          Length = 1157

 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 94/895 (10%), Positives = 203/895 (22%), Gaps = 106/895 (11%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A         L  +  +    +P + P   +         A ++   E  E+  E L A 
Sbjct: 273  ADPHADLDQALAALFTEKGAGTPATWPAKTSGLKSREDLRARLLAEQERLEEAREWLRAA 332

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA--------LMRAEAEHLMK 224
            +  +       A     +  +          A                 +  A   + + 
Sbjct: 333  RVAEDSSD---ALRLAGLYIQAHGVEKAARGALDFADLIDKTKVLLTQKVDAAWVLYKLD 389

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVA------------------NHPNGAIVLPGLDCHI 266
            G    I++  +  + P    ++  +                      +   +    D   
Sbjct: 390  GGIDHILLDEAQDTAPEQWAILRALTSDFFAGEGAVRWRAEHSTQAQDARTLFVVGDEKQ 449

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAK----------------LLDFLDIKREDV 310
                +     +     +            + K                 +D L    E  
Sbjct: 450  SIYSFQGAAPERLLAETQAYIAQITDVGRVGKHVPLITSYRSTVEVLSFVDALFSAPETR 509

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
              +   + E   R                   ++   +           +   A+    E
Sbjct: 510  SGVPAPAGEDLVRHQPFRIDHKGCVDLWPLERELPGEEREAWDAPLDAESEHGANRRLAE 569

Query: 371  --AISIAIALRM------------SLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
              A+ I   +R                       L+   + L   V   L R G+ +  +
Sbjct: 570  KIAVEIQALIRRGDVVFDKETREWRPAHPGDILVLVRRRKALFEEVLRALKRRGVPVAGA 629

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
              + LS  +    L +L       +D + +A L+K P       + Y             
Sbjct: 630  DRLSLSAHIVFDDLLALGRFCLFPDDDLTLAALLKSPFCGLSDDDLYGLAKGRQ------ 683

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                       L + +  R       T           E         +     +  +  
Sbjct: 684  ---------GTLWAALDARAVEHPKWTAAHALLRWALTE--SRRRQPFEFYALLLGRVDE 732

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
               +  +        +  +     L  +   E R + +L           +  K    G+
Sbjct: 733  TTRSNRAKVLTRLGEEAAEALDEFLAQILAAEQRGVRDLEALVADFASLDIIVKREMEGA 792

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
              +   +                 K  ++  +F+  T          L+       +W  
Sbjct: 793  RQEVRVM------------TAHGAKGLEAPIVFLPETTMKGGARGSPLMRTDQGGFLWCA 840

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
            + A +   S + +     K AE+ +      +      R  +      +           
Sbjct: 841  SKANDCEPSAMARERREKKDAEEAL---RLYYVALTRARDRLILCGRIDARTKDETVGGW 897

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
                             R        R      +           P+     T + +  +
Sbjct: 898  YAAARAAFAHPDIEPGVREISEDGRLRFGPDPMRAEAAAPSAAPAPIPTPAWTLAPARPE 957

Query: 777  QLI---NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
                    P  +                   R  RG + H ++  L            N 
Sbjct: 958  TPAARYAAPSTLEDEARGSAPSPLAAVSGLGRYRRGEIIHRLLQLLPDIEPMGRGTAANR 1017

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
            L+        +++               + +  F            +  V++    A   
Sbjct: 1018 LLAAE-RDLTDEQRGEMAAAAFGVLEDDRFAEVF--------GPGSRAEVSVAGGAAKLP 1068

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKA 946
             G+ ++G  DR+ +     V + DYKT          A      Q+++ AA L  
Sbjct: 1069 PGLAISGRVDRLVVTPD-RVLVVDYKTNRPSPARIEDADPAYLSQMAVYAAVLAE 1122


>gi|56551994|ref|YP_162833.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
            mobilis ZM4]
 gi|56543568|gb|AAV89722.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
            mobilis ZM4]
          Length = 1162

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 105/828 (12%), Positives = 206/828 (24%), Gaps = 102/828 (12%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSP--------VGYQIALMRAEAEHLMKGTK 227
            ++  + + A    +  S+ W +   E                 +   +     + +  T 
Sbjct: 335  EFSQFAIAALRTGQAYSQAWQQTKKESGLVDFNDMIETSVALLRTPGIGEWVRYKLDRTT 394

Query: 228  GPIIIAGSTGSIPATARLMSTVAN----------HPNGAIVLPGLDCHIPTAIWNTITEK 277
              I++  +  +      ++S +A                 +    D       +     +
Sbjct: 395  DHILVDEAQDTNIFQWAIISALAEDFFSGESAKSVEASRSIFAVGDFKQAIYGFQGTDPQ 454

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
            +           +         L      R     L  V   +           +     
Sbjct: 455  AFVDARDYFNDKSQGSGREILDLSLNRSFRSTPPILAIVDQMLADIESSCGGIGISQQAL 514

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS------------IAIALRMSLDEN 385
                +   +     +          E +N  EE  +            +AI L   ++  
Sbjct: 515  QPHQSARSDLGGSVVLWQPISDYQEEGENTSEETDADDEEQLENGELELAIRLARQIETW 574

Query: 386  ------------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
                              +    L+     LA  +   L    I +     + L+  L  
Sbjct: 575  LNPKTPLYLPALGRNAAPRDILILVRNRGRLASLIVGCLHAQKIPVAGLDRLTLTAPLAV 634

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            S L S +  + + +D + +A L+  PL  +     Y   AK A +       + S    +
Sbjct: 635  SDLLSAIRFVLQPDDDLTLACLLVSPLIGWDQERLYRLAAKRAKKESLFDRLRKSEAEKE 694

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
               ++ + ++     T     +  LS + +    LL     +   P+             
Sbjct: 695  TWDIIREWLSKADFITPYRFLEMLLSGKGEGRRKLLERLGEEARDPINELLNAALLLE-- 752

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
               S+ T      L              WF+     +    S    T   +  +  + + 
Sbjct: 753  ---SETTPSFQRFLD-------------WFDSGDVEIKRDPSVRQNTVRIMTVHGAKGLQ 796

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                ++   T  P         I+              L   N  +   +     +L   
Sbjct: 797  APVVILADATRDPHQSNGFRKEIITW-----------PLDEANAPIPMPSNDDIAYLPSD 845

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
                +N K A+         +  A      L+ T  L                     T 
Sbjct: 846  FGDIINEKKAKDLQEHWRLLYVAATRAEEYLVITGHLGSRAKNIPPKDSWYACATRAITA 905

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAV 785
                 ++            +   K     + +P  P EA P        ++     P   
Sbjct: 906  MGIAWQEDAMWQQKAVYHWEGRKKVTDIPKKQPTFPKEAMPSWIKNEIPEEPKPAYPLRP 965

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII---DSH 842
                       P          RGTL H +   L    + +        ++      D+ 
Sbjct: 966  SDLVKDNTSNPPPDGGSITAAKRGTLLHALFERLPMLPVEEREKAGLRWLETSAGVKDAA 1025

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                 +    D +   ++  I               EK     P    +      ++G  
Sbjct: 1026 LRNSLIKDACDAMSNPVYRDI-------------FSEKALAEAPIAAKV--GEHVISGTV 1070

Query: 903  DR--IDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
            DR  ID  K   V I D+KTG      KE   +    QL+    AL+ 
Sbjct: 1071 DRLWIDRNK-KRVHIVDFKTGRRVPATKEQVSEAYQRQLAAYVVALEK 1117


>gi|293398645|ref|ZP_06642823.1| exodeoxyribonuclease V, gamma subunit [Neisseria gonorrhoeae F62]
 gi|291611116|gb|EFF40213.1| exodeoxyribonuclease V, gamma subunit [Neisseria gonorrhoeae F62]
          Length = 1068

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 103/876 (11%), Positives = 222/876 (25%), Gaps = 69/876 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W             W  R ++    S         +  A
Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N  +    + ++      + ++ A +   E   +   L   L E+        A++T +
Sbjct: 311 QNLKMPSENVGSVGTDDGSICIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L+ L + +    +   +  L
Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVGKVLVL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D        +        +
Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQAVERMILGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +    +       L T            ++ +W       L+ 
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +          +   E          +    G   +      I  I R +D E+      
Sbjct: 551 LFQAGPDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                E     R  L  +   R+   +    +S  L  L+         N ++  Q +++
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMTGTNSRQLAQNWIE 724

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                        Y +           RT   + + Q    P   + + +   + +    
Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIG 781

Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
           +D                  +  +     ++      I ++    E   P          
Sbjct: 782 QDE------------FIRFWRNPVKVWLQQLAWSEPHIGEAWEPAEPFEPQH-------A 822

Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
            +I+ +++    +      +    I A+  + S  +
Sbjct: 823 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 857


>gi|229820062|ref|YP_002881588.1| ATP-dependent nuclease subunit B-like protein [Beutenbergia
           cavernae DSM 12333]
 gi|229565975|gb|ACQ79826.1| ATP-dependent nuclease subunit B-like protein [Beutenbergia
           cavernae DSM 12333]
          Length = 1043

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 98/868 (11%), Positives = 200/868 (23%), Gaps = 94/868 (10%)

Query: 161 TEEKKWEDLHALKNEKYGMWWL-LAADFLKIASKYWTERLVEL-----NASSPVGYQIAL 214
                   L  L                  + + +W   L E        +       AL
Sbjct: 62  VAGLVLTTLPRLAETLVAAHLHPRVPATRTVVAAHWRAILREEPGRFGRVAEHPATVRAL 121

Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           +RA  E    G +G   IA S        RL  TVA     A         +  A     
Sbjct: 122 VRAHTELRDAGDEGLDAIAASGLLAADLVRLHRTVA--ARLATRWYDETDLLRAAAARLR 179

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
                   +       H    LA     L     D + L  V      R           
Sbjct: 180 GTHGDLPATGGNAVVVHVPGRLAHAERELLAALADARPLHAVVALTGVRRADEEVVRGLA 239

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALI 392
           +       +  ++             +  A +  +E   +A  L  +L+     + + L 
Sbjct: 240 EAGVEVPQERADDGARLGPAPPVATYVRHASDADDEVRLVARELVATLETVPAHRAAVLY 299

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 AR +   L   GI ++      ++    +    +LL           +   +  
Sbjct: 300 AGASPYARLLHERLETVGIRVNGPGVRGVAERAITRSFLALLRLPQARFARADVFRALAD 359

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
              +                    R             L        +            
Sbjct: 360 APVRTSDGSPVPVA----RWEQVSRLAAVVEGTDWDARLRDWAARQHRVAETERAADDPR 415

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
               +     +                    T                       +  + 
Sbjct: 416 PAVLEAADRDVETAEAMRREIGALIADVTRGTELRTWRELAAWALDLLAARYGESDDLRR 475

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
                +     L+S    +           +        L     V         +++  
Sbjct: 476 LPPEEQYAAAALTSALRGLEVLDDVDPVADLSTAVEAIELELERAVPRVGRFGEGVYVGP 535

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH--DFEM 690
             E   L+ D + + GL E  +P     +  L    ++  +     +      H      
Sbjct: 536 LGEVAGLDADVVFVVGLAEDAYPGRLRADALLGADARAATDRLAPARTWIDDRHRALLGA 595

Query: 691 ANGTRHLIYTRSLRE--NNIPTIASRWLQ------------------------------- 717
                 ++ T    +   +   + +RWL                                
Sbjct: 596 FAAAPRVVATFPRGDLRRSTERLPTRWLLPTLRALASDRDLAVTDWDTIRSPHLTGSPSF 655

Query: 718 --RLLVLGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPKP--------------F 760
              L            + R           +    +     R  P               
Sbjct: 656 ATELTTTPLPADEQEWRVRAASAGALVPDAVVDAARDLLAGRRGPGLSRYDGDLSASAGL 715

Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD--PDRTDRGTLFHNIITE 818
           P         S + ++     P+A + +R+L++  +   ++       + GTL H  +  
Sbjct: 716 PDHATGTPVVSPTSLESFAECPHAWFVQRLLRVQPLELPEETVTISPLEIGTLVHACLDR 775

Query: 819 LIK------KRINKNTPEINHLMKQIIDSHFEKEN-----LPPHIDIIWRHLFHKISHSF 867
           L++            +      + +I D+   +           +  + R    +     
Sbjct: 776 LVRTSEALPANGAPWSAADRARLAEIFDTKAREAARRGATGHARLWEVEREALLRDLGRM 835

Query: 868 LEHEEKIQS--SIEKIFVN--------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
           L+ ++  ++      +            P ++A+    + L G AD++D    G + +TD
Sbjct: 836 LDDDDAWRASRGATVLASELTFGTDGAEPVRVAVPGGAVALRGSADKVDRAGDGTLIVTD 895

Query: 918 YKTGDNPKKETAQK-----LIDPQLSLE 940
            KTG   + E  +          QL + 
Sbjct: 896 VKTGSTRRYEEIEDDPVAHGTRLQLPVY 923


>gi|212703125|ref|ZP_03311253.1| hypothetical protein DESPIG_01164 [Desulfovibrio piger ATCC 29098]
 gi|212673391|gb|EEB33874.1| hypothetical protein DESPIG_01164 [Desulfovibrio piger ATCC 29098]
          Length = 963

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 113/968 (11%), Positives = 247/968 (25%), Gaps = 116/968 (11%)

Query: 2   HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
           H++ P +    P +     ++       +V    +  + P  L    +   T++A  EL 
Sbjct: 15  HDEGPVLVIAGPGAGKTFTLVE-----RIVHLVAHKGIQPEQL---LVATFTEKAANELT 66

Query: 62  SEFIEIT---GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118
           S         G ++        + ++      +  L     +   + +++   L      
Sbjct: 67  SRIARRLMQEGVQAN-------VDEMYVGTLHSICLRLLEEHREFTRLRKNFTLMDQFDQ 119

Query: 119 --WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
             +  +     ++L P S L            A  L   ++ +  E    + L A   ++
Sbjct: 120 SYFFFQHLRQFEELAPLSLLVRGNVNVGRWKRATLLCGWMNKLSEEVLSADALQA-DPDE 178

Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPII 231
                      L      +   L + N       Q+  ++    +       +     ++
Sbjct: 179 VI-------QALGKWYALYLSLLEKENLLDFSVIQLEALKLLKNNPRVLTSLREKIRYVM 231

Query: 232 IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
           +     +     RL+ T+ +      V+   D       +   T ++             
Sbjct: 232 VDEYQDTNTIQERLLFTLLDDKQNICVV--GDDDQGLYRFRGATIRNILEFPRRFPKGRC 289

Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
             Y+L                  + S + +         F  P         I       
Sbjct: 290 AVYTLTVNYRSDPGIITFYNDWMSGSVDGFSWQGDGGTVFRHPKRISPPEGKISLKTPVL 349

Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA--DRNLARRVKLELTRF 409
                +       +N  EE +     ++     +  + A +      + A+ +   L   
Sbjct: 350 RLSGSAS-----TENWHEEVLEFLKKMKERHLTDWNQVAFLFRSVRWDKAKALASYLEEH 404

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
           GI I               ++               I  L+        F +        
Sbjct: 405 GIPIYAPRSDLYFEREEVRLM---------------IGALL---FLFPVFRDI------- 439

Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
             +     G    +D  D   L+      Q +N  +  W  RL  E        V  +  
Sbjct: 440 REQWQKNFGALAIWDFYDTCLLLFAEKLRQPDNKELKDWCVRLVRE--------VQGMRI 491

Query: 530 CITPLVTYKTNKNSTCGNLSI-SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
             TPL    ++         + SD+ +L  +               L  + E      + 
Sbjct: 492 RNTPLDWGFSSLFYQLIQFPLFSDYLELGTSSRDERPARNLAIFSQLIVKFEYLHHIQVL 551

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                  +           I+   I              +  +   +++ L F   ++G 
Sbjct: 552 HPAYLEKNIGDFFNHYLRYIVDGGITEFEDPGDSTPQGAVSFMTIHQAKGLEFPITVVGS 611

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA--AHDFEMANGTRHLIYTRSLREN 706
           L+     ++T  +  L          +  E+          +   +  ++L+      E 
Sbjct: 612 LHAVPRKQHTDLDELLEARHYERPAFEPLERIKEFDFKRLYYTAFSRAKNLLILSCQEE- 670

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                    L             +          W        K           P   +
Sbjct: 671 ---------LTARGKFKIPSHPFHAFYA--NLPSWREADFSKLKVD------TVRPGGIK 713

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK-RIN 825
                 S I      P      +      +            G L H  I ++ K     
Sbjct: 714 GHYSYTSHILIYEGCPRQYQFFKYWDFSPVRE-----GPMLFGQLVHQTIEDIHKAVLRE 768

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDI--IWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
           ++       ++   D ++   +    + +    R +       ++E ++     I     
Sbjct: 769 QSETVTEDNIRLWFDVNYANLSQKERVYLAPQIREVALGHVLRYVERKQGRWDDIR--GT 826

Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-AQKL----IDPQLS 938
            +   +  +     LTG  D I   K   V+I D+K    PK    A++        QL 
Sbjct: 827 EVDVSLIRD--EYILTGKIDLI-QGKGNTVEIVDFK--ATPKPNQYAERHLLERYRRQLE 881

Query: 939 LEAAALKA 946
           + A  ++ 
Sbjct: 882 IYAYLVEQ 889


>gi|300853886|ref|YP_003778870.1| putative ATP-dependent nuclease subunit B [Clostridium ljungdahlii
            DSM 13528]
 gi|300434001|gb|ADK13768.1| predicted ATP-dependent nuclease, subunit B [Clostridium ljungdahlii
            DSM 13528]
          Length = 1150

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 101/905 (11%), Positives = 236/905 (26%), Gaps = 129/905 (14%)

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244
             + + I    + ERL   N          L     +         + I       P   +
Sbjct: 155  LEDIIIIYSEFQERL-HKNYIDSEDILSLLYEKL-DKSNFFNNAEVWIDEFYSFTPQEYK 212

Query: 245  LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
            ++  V        +    D     +   ++        +              KLL+   
Sbjct: 213  VLEKVIYKSYRTNITLCTDILSENSSLESMDLFLPTKITE------------KKLLEIAK 260

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                   +  ++ +  Y R    ++              I        ++  S + + +A
Sbjct: 261  NNNISYDKPISLKSNSYSRFKGNAEL-------GHLERYIFSYPYKTYKRSNSSIRIFKA 313

Query: 365  DNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIP 420
             N+  E  + A  +     +     +  +++T D +    +      ++ I   I     
Sbjct: 314  LNKYTEVENSARDILKMCRDEGFRFRDISVVTGDLDGYENIIKAVFNQYNIPYFIDKKRE 373

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            +  +    ++ S +  + K   + A+   +K  L    F E  +         +  +   
Sbjct: 374  IDDSPIIILIISAIEILSKNWSYEAVFRYLKTGLLNLEFDEIDMLENYVLANGIIGKKWT 433

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
            N        +         +  T      + + ++ +E  + L   I             
Sbjct: 434  NPKPWNYRINYGNFDEEISEEETEYLKKINCIRDKVREPILKLSKDIKG-----KKTGQQ 488

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                  N  ++      V  L     +  +      + +    +  +  +I         
Sbjct: 489  MCEGLYNFLLNLEVPKKVETLIKEFRNTSKLDKANEYSQIWNIVVDILDQIAVVIGDESI 548

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                + +++        +         + +      R  +   L + G+N+G++P + + 
Sbjct: 549  GMELFSEVLANGFSQYEIGVIPASLDQVLVSSVTRLRSHDVRILYIVGVNDGIFPASISA 608

Query: 661  NPFLSRVMQSDLNLKTAE-------KYIGQAAHDFEMANGTRH-LIYTRSLRENNIPT-- 710
            +   +   + +L  +  E       +   +    + +       L  + S+ +    +  
Sbjct: 609  DGVFTDEDRDELRKRGMELAKDTRSRAFEEQLLVYGILTKADKYLTLSYSMSDEEGKSKR 668

Query: 711  ----------------IASRWLQRLLVLGGTDFFDNLKKRGQCYL-DWTRKLDYTTKQPH 753
                              S     L    G +  +  K      + +  R ++       
Sbjct: 669  QSIVISIIKKLFPKVQEESNLKGILGDKAGIEAVNGPKDTFNELISNIRRSIEDNNSVDP 728

Query: 754  YKRPKPFPPLEAQPRT---------------------------------YSFSEIKQLIN 780
                           +                                  S S +++   
Sbjct: 729  LWINVYRWYKNDPSWSKKVETVLKGFSYNNYIEILDKSKVRRLYGSHLNISVSRLEKFSE 788

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             P+A + +  LK++       +    D G+  H+I+ +   +   K      + + +   
Sbjct: 789  CPFAYFVQYGLKVEDRKM--YNLSSPDLGSFMHDILKKFSIQLKEKKLTW--NDIDRNWC 844

Query: 841  SHFEKENLPPHIDII-------------WRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885
                K  +   +  +                   KI     +L  E   +         +
Sbjct: 845  EENVKVVVDSTLSGMPGSILNSSKKYKHITDNLKKILTRSVWLIAEHMKRGKFVPRAYEL 904

Query: 886  PA--KMAIE--------SIGIHLTGFADRIDLLKSGF---VDITDYKTGDNP-KKETAQK 931
                   I            + L G  DRIDLL+      + I DYK+G    K      
Sbjct: 905  SFGDSGDIPPISIKLHSGEEVSLIGRVDRIDLLEQDSVVYLRIIDYKSGTKEFKLSDIYY 964

Query: 932  LIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
                QL +   A L               + Y +L      D I   +   S  E+ +K 
Sbjct: 965  GFQMQLLIYLDAILAELDEKFNKEGIPGGILYFKLD-----DPIIKTEGNISDSEIEKKI 1019

Query: 991  LKNLI 995
            LK+L 
Sbjct: 1020 LKSLR 1024


>gi|254514374|ref|ZP_05126435.1| UvrD/REP helicase family protein [gamma proteobacterium NOR5-3]
 gi|219676617|gb|EED32982.1| UvrD/REP helicase family protein [gamma proteobacterium NOR5-3]
          Length = 1108

 Score =  117 bits (293), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 87/848 (10%), Positives = 198/848 (23%), Gaps = 103/848 (12%)

Query: 159  IETEEKKWEDLHAL-------KNEKYGMWW---LLAADFLKIASKYWTERLVELNASSPV 208
              TE+     L  L         E+    W         L            +       
Sbjct: 314  ALTEDADPALLSDLRQVLLLPDVEEEPQHWHVLAALTRLLPRLGAQLLLVFQQSGEVDHA 373

Query: 209  GYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
               +A + A             +      +++     +      L+  +           
Sbjct: 374  QIALAALTALGSDDEPTDIALRLDHAIEHLLVDEFQDTSSVQFELIRRLTRGWQD----Y 429

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              + +        + +   +I             + ++ +  L +   D+         +
Sbjct: 430  NTENNQAPRTLLLVGDAMQSIYGFREANVGLFIRARSEGIGDLALTPLDLSVNFRSQQGL 489

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
               +    K+  P             +              I       EA   A+ L++
Sbjct: 490  VEWTNSHFKAGFPATDDAQLGAVQYRSAAAARDPGPEPELAIFTGEGANEAEIAALCLKL 549

Query: 381  ---SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                +D+  +  A++   R+  R V   L   GI +       L+       L +L   +
Sbjct: 550  EEGLVDDQVESIAILGRSRSQLRPVLAALRERGIEVAARDLDTLAQRPLIRDLLTLSTVL 609

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                D  A   L++ P           +       +     + +  D +           
Sbjct: 610  CDRFDRYAWLALLRCPSI-----ALDNADLLLMSMMCPTAADLSDPDFVA---------- 654

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                                +    L D   Q +  L       +     L++  W +  
Sbjct: 655  -------------------SQEFARLSDTARQRVGQLQNVLQWADHYRDRLALRVWVEEC 695

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               L                    +       + ++    ++         +        
Sbjct: 696  WLLLHGAGAL------------ASEADIHDAERFLQCLEQLEMQQQTLNGRMLNEAMDTL 743

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA---KNPFLSRVMQSDLNL 674
                 ++   + ++   +++ L FD + +  L +    ++      + F+         L
Sbjct: 744  YASPGDERCKVQVMTLHKAKGLEFDWVFIPALAKNTAGQDRELLLWDEFVLPGSAPAFLL 803

Query: 675  KTAEKYIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
                   G        +    A   R    TR             WL   L         
Sbjct: 804  DIRADAEGGDRPRMYDYLKAQAKQKRDCEATRLFYVGCTRAADYLWLGATLSWDEAKEAH 863

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                 G         ++               P +    T S +  ++L + P  + A  
Sbjct: 864  RPPGAGSLLSVIWPTIESQLDVSFV-------PADDAITTESLTGYRRLRDLP-RIEATP 915

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
               L       ++      GT  H  +  L+     +     +  +  ++     +    
Sbjct: 916  QDALAQGLKLAENYQARAFGTAIHRCLEALV--YRPQLPRSCDAALGALLKVALLEAGAD 973

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
                   +     +    L              +    +   +  E+    L      +D
Sbjct: 974  SSSLSRLQSEGAAMLDRVLADPFAAWMLSGERHERAAELALTVGTETGTQQLI-----LD 1028

Query: 907  LL----KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA--GSFSQIDCRKVANL 960
                    G   + DYKT    + E+ ++ +  QL   +A L A   + ++     V   
Sbjct: 1029 YSFVDEARGERWVVDYKTSAPGEGESEEQFMANQLQSYSAQLSAYVLALAERFSEPVRCA 1088

Query: 961  FYIRLKQK 968
             Y     K
Sbjct: 1089 LYFPALGK 1096


>gi|325291476|ref|YP_004277340.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3]
 gi|325059329|gb|ADY63020.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3]
          Length = 1185

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 92/830 (11%), Positives = 209/830 (25%), Gaps = 116/830 (13%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGS 235
            A    +     + +   + +                         + +      I++  +
Sbjct: 364  ALVLAERLIGDFEDLKKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGIDHILVDEA 423

Query: 236  TGSIPATARLMSTVANHP--------NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
              + P    ++ ++A               +    D       +     +  +     T 
Sbjct: 424  QDTSPVQWSIIQSLAADFFSGESARMGRRTLFAVGDEKQSIYSFQGARPERFSQERDETK 483

Query: 288  YS-THPQYSLAKL------------LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
                  + +  ++            L  +D    D K    +S +        +++  P 
Sbjct: 484  RRVDSVEQAFHRIRLPLSFRSTEDVLAAVDQVFSDPKNASGLSADNEPVEHRSNRAGHPG 543

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR-------------MS 381
                         +         D AL E+      A  IA  +                
Sbjct: 544  TVEVWDMVAPETAEDEEDWTAPFD-ALRESAPATIVARRIAARIAGMIGNQTIIEKGVER 602

Query: 382  LDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
              E      L+         +  EL  R  I +  +  + L+  +    L +L   +   
Sbjct: 603  AIEPGDILVLVRKRHAFVNALTRELKRRKNIPVAGADRLRLTDHIAVQDLLALGRFVVLP 662

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKN-ALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
             D +++A L+K PL      + +   A     E V  R    S D     S+V +++   
Sbjct: 663  EDDLSLAALLKSPLFNLSEDDVFDVAATRSDTESVWQRLQTLSQDENSRFSVVANKLKNF 722

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               +     ++    +     + L D   + +  L    ++      + ++         
Sbjct: 723  IALS-----KTATVHDFFAAVLTLHDGRKKFLGRLGNEASDVLDEFLSFALDHERTGLPG 777

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                + + E         +++ +    + +     G                        
Sbjct: 778  LQAFLSVLETDSPEVKREQDKDRGEVRIMTVHASKGLEAPVVF----------------- 820

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                    +   G+      +   L     +   +P     + F + ++++D        
Sbjct: 821  --------VVDGGSKAFNHSHVPKLRFVEADGDAFPVWLPGSGFSNHLIRADEERLKTAA 872

Query: 680  YIGQAAHDFEMANGTRHLIYTR------------------SLRENNIPTIASRWLQRLLV 721
                    +         +                     +L +N       +++     
Sbjct: 873  EDEYRRLLYVAMTRAADHLVVCGYRGQKENPECWHAIVKTALADNEKHCQPQQFMADGEE 932

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
              G  +  +  +                         P P L + PR  S S    +I+D
Sbjct: 933  WQGLVWRKSDARSTPAPQRLPEPQTQEEYALPAGLLTPLPALPSLPRPLSPSGAGTIIDD 992

Query: 782  PYAVYARRILKLDFIPHFKKDPD--RTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 A R      +   K D       RG L H ++  L                 +  
Sbjct: 993  GADDLAVR----SPLFGEKADVSSLALQRGRLVHRMLQALP-----DFAESEREEAARRY 1043

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK---IFVNIPAKMAIESIGI 896
                 +       + + R +   +       E  +Q +        V+I   M I     
Sbjct: 1044 AERAARFWPSAEREHLIRAVLRVM------SEPAVQPAFSPNSRAEVSIMGTMTIGRQHY 1097

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAAL 944
             ++G  DR+ +     V + DYKT   P ++  +       QL++    L
Sbjct: 1098 AVSGRIDRLAVDGD-RVILVDYKTNRVPPRDAHEIPFSHTAQLAIYREIL 1146


>gi|221236588|ref|YP_002519025.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000]
 gi|220965761|gb|ACL97117.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000]
          Length = 1153

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 97/975 (9%), Positives = 236/975 (24%), Gaps = 126/975 (12%)

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVS-NIQRLLELARLILIWRNKLPDIIKDLYPE 133
            LP  +++  V+ +        S      V+ +    L+LA         L     +  P 
Sbjct: 243  LPAWRAVASVLFDGGGKQDAKSAEALAAVARDPDATLDLA------LRALFTEGGEGTPA 296

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193
            +  +      +   L + L  +++  + E         ++  +       A     +  +
Sbjct: 297  TWPAKTSGLKSREDLREAL--LLEQAKLE----AAREQVRAARVAEDTQNALLLAGLYIE 350

Query: 194  YWTERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAGSTGSIPATARL 245
                      A               E +               I++  +  + P    +
Sbjct: 351  RHMAEKEARGALDFTDLIDKTRLLLTEKVEAAWVLYKLDGGIDHILLDEAQDTAPEQWEI 410

Query: 246  MSTV-------------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS--- 289
            +  +             +       +    D       +           +         
Sbjct: 411  LRALTADFFVGETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPTRLLEETQGYISRIEA 470

Query: 290  -------------THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
                             + +   +D L    +  + +     +   R  +          
Sbjct: 471  VGAVGKGVPLTVSYRSTHEVLSFVDALFSDPDTREGVPPPVGQDLVRHELFRHGHPGCVD 530

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--------------RMSL 382
                  ++        +K   +     A+    EAI+                   R   
Sbjct: 531  LWPLTRELPGEDREAWEKPLDEEGERSANRRLAEAIAAETRAILDRGDAVFDKDLGRHRA 590

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                    L+   + L   +   L R G+ +  +  + LS+ +    L +L   I   +D
Sbjct: 591  AHAGDILVLVRRRKALFEEIIRALKRRGVPVAGADRLALSSHIAFEDLVALGRFILFPDD 650

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNA--LELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             + +A L+K P    G  + Y         L +   R ++   +    ++++   +A  +
Sbjct: 651  DLTLAALLKTPFCGLGDDDVYALAKGRRGTLWVELTRRSEERPEWAAARAVLDWALAEGR 710

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                   +   L   D +                     +  +       ++  +     
Sbjct: 711  RRQPFEFYAGWLGLTDAD-------------------GRSHRAKVLTRLGAEAEEALDEF 751

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
            L  V   E R + +L           +  K    G+  +   +                 
Sbjct: 752  LAQVMEAEQRGVRDLEALVADFAALDIIVKREMEGARREVRVM------------TAHGS 799

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
            K  ++  +F+  T   R      L++      +W  +   +  +S   +    L+  ++ 
Sbjct: 800  KGLEAPIVFLPETTVKRGAGGSPLLVTEDGALLWCASGKNDCAVSAKARK---LREDKES 856

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG--TDFFDNLKKRGQCY 738
                   +      R  +      +                      D    ++  G   
Sbjct: 857  QEALRLLYVALTRARERLILCGRIDARTKDDKVGGWYAAARAAFAHPDIAPGVRTIGDGE 916

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
              + R        P                    +                  ++     
Sbjct: 917  TAFLRYGPDPLGAPRVAPATAAVAAPPAWIMAQATPEPAAARYAAPSRLEDTARVPAPSP 976

Query: 799  FKK--DPDRTDRGTLFHNIITELIKKRINKNTPEINHLM--KQIIDSHFEKENLPPHIDI 854
              +     R  RG L H ++  L      +       ++  ++ +      E      ++
Sbjct: 977  LARIAGLGRYRRGELIHKLLQLLPDLPPAQRPDAARRILAAERDLTDTQRTEMASAAFEV 1036

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914
            +    F  +                +  V +    A    G+ ++G  DR+ ++    V 
Sbjct: 1037 LEDARFAAV-----------FGPNSRAEVALAGTSAHLPQGLAVSGRVDRL-VVDDARVL 1084

Query: 915  ITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
            + DYKT          A      Q+++  A L+         R V            K+ 
Sbjct: 1085 VVDYKTNRPSPDRIEDADTAYLAQMAVYVAVLREV----FPGRTVEAALVW--TDGPKLM 1138

Query: 973  CITNDKKKYSADELS 987
             +       +   L+
Sbjct: 1139 PVPEKVMALALARLA 1153


>gi|269218750|ref|ZP_06162604.1| helicase, UvrD/Rep family [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211861|gb|EEZ78201.1| helicase, UvrD/Rep family [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 1079

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 117/1068 (10%), Positives = 242/1068 (22%), Gaps = 144/1068 (13%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADL-LLSYNLNPPVS 104
             + +    +RA   L+S      G  S  +  ++SL         +    +       +S
Sbjct: 50   RIAVLTLDRRAASSLQSAVSLTNGSLSERV-SVRSLVSFCYGIVQSYAQAVGRREPELIS 108

Query: 105  NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
              +    L+ ++            +   E P  +             + D++        
Sbjct: 109  GPEEDALLSDILAD---------PEAGVEFPDFVDDDLRRQRGFRAQMRDLLTRACELGL 159

Query: 165  KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL---------- 214
                L  L  E     W+     L +     T R     A+                   
Sbjct: 160  SPRRLEDLGREHGEPMWVAGGQLLGLYEGVTTARDALAGAADAPDRLDHAHLVGAATAIL 219

Query: 215  ---MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
                        +     +I+     +  +   L++ +A   +GA V+   D       +
Sbjct: 220  RDWEANVPGPHPRPRWDWVIVEDIHNAPRSVLGLLAELA--ADGASVVTTGDPDCAVQGF 277

Query: 272  NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                       ++           L      L  +     ++  V++ +     V   + 
Sbjct: 278  RGGVASLPGDVAAPAP------RGLGSRTVALRQRHRGGPKIAGVADALAEAVRVGGGAV 331

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSAL 391
               +            K        S    +  + E           R+       + A+
Sbjct: 332  RQRN-----------PKAAERPDSVSARRFVHPEEEAAAIARAVREARLLRGIPYSEMAV 380

Query: 392  ITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFKL-NDFMAIATL 449
            +T  R+    ++  L R G+ +       PL        L SL+            +  +
Sbjct: 381  VTRSRSTHPGLRAALVRRGVPVGQIGTDRPLREEPAVDALLSLVRLALDRAFGSAELVRV 440

Query: 450  VKHPLAKFGFPE-------------------------------------------KYLSR 466
            +  PL                                                    L R
Sbjct: 441  LTGPLVGIDPLRLRQIGRILRGGELARGGSRSESELLSLAAEGPSRLSEVAPKGIGDLLR 500

Query: 467  AKNALELVALRGNKNSYDIMDLKSLV--------LDRIATQKNNTHVPHW---------- 508
            A   LE V     +++    ++              R A  +  T               
Sbjct: 501  AARMLETVREAAERSNRQAEEVLWAAWESSGKAEEWRKAALRGGTAGDAADSALDSVIQL 560

Query: 509  -------QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                     R  +   +  +  +         +        +       S   +     +
Sbjct: 561  FRVAQRMADRDVDVPVDAVLDELQTHDLPEDSIARAGAAAQTVTLTTPNSSIGRQWEFVV 620

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE---TGSCIKANAIEWIDIITRLIDGETV 618
                 D       L          +      +       +      + +I+   +     
Sbjct: 621  VAGLQDGLWPNMRLRDAYTATGRLAQIVTGRDPGAGADGLAGRRQAYEEILDDELRQLHH 680

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                     L                 L G          +     S   +         
Sbjct: 681  AVTRANGELLLTC-ADSEEARPSRFFELMGFVPEELQDAASAGRQGSGDARQSGGSPDVA 739

Query: 679  K----YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
                      +     A      +   S R           +  +   G           
Sbjct: 740  GAQSPSAALDSDGVRHAAAASGRLVLESPRAAEGELDVVGLVADIRRSGAGGREAEEVLA 799

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                    R+ D  T     +               S S ++ +++ P   +   +    
Sbjct: 800  RLR-EAGFRQADRCTWAEALEPTPSRGIEAGGTVVVSPSRVETMLDCPLRGFLSLVGA-- 856

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                   D    D GTL H I          +   +          + F+K   P     
Sbjct: 857  ---EDSDDRRTADIGTLVHAIAERSAGASREEIMGDFEA-----SWAAFDKPEDPVAAQA 908

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914
                    +      + E          V     + +E  G+ L+G  DR++   +    
Sbjct: 909  -EYARARILVEGLASYLEDFARGGGSAEVERRISVDMED-GVVLSGKIDRVEHDGAAR-R 965

Query: 915  ITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
            I D+KTG      + A+   + QL L   A+     S +     A L Y+    K     
Sbjct: 966  IVDFKTGKHTVSAKQAED--NVQLQLYQWAM---GKSGLPADGGAALVYLGQTLKKTNLP 1020

Query: 974  ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
               +++    +     + + L +   LLQ GE  F +    + ++   
Sbjct: 1021 AQREQRPLGPEG-KALAEERLRQAGRLLQGGE--FPARPSQACRTCRF 1065


>gi|227890028|ref|ZP_04007833.1| ATP-dependent nuclease, subunit B [Lactobacillus johnsonii ATCC
           33200]
 gi|227849472|gb|EEJ59558.1| ATP-dependent nuclease, subunit B [Lactobacillus johnsonii ATCC
           33200]
          Length = 1158

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 110/1030 (10%), Positives = 254/1030 (24%), Gaps = 168/1030 (16%)

Query: 46  SVTIYVPTK-------RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98
            V I VP         RA+ +L              L  I S   +           +  
Sbjct: 32  DVFIIVPNHIKFTTEVRALSKLS-VLTNKKQVAVNKL-HILSFSRLAWYFLR---DEAIK 86

Query: 99  LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           L   + +   ++ L +++   + +L                         +  L  + + 
Sbjct: 87  LPQILDDAASVMLLEQIVKDHQGELKLFQNQTQVT---------------SGALRQMYEA 131

Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
           I +      +L  +  +K           L+I    + ERL E  A+        L+   
Sbjct: 132 ILSVRAGNIELDNIDEKKLNEETSYKIHDLRIIYDEFIERLSEKFAT--KDEMQLLLNEF 189

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                  +      +  +         +  ++                       +  K+
Sbjct: 190 LAKSNNLSTMEFYFSDFSHFSLQELTSVRLISKKAKNTT----------------LAFKT 233

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 N        Y + + +  L     +        +       +   S        
Sbjct: 234 KIGKIDNNAEPGDYDYVVQRTIGQL-----EHFWQNQQLDYQTQEYPLTQTSPSSLLNGV 288

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD 395
              T   + ++         +  ++AD+   EA  +A  +   +   +   +   ++  +
Sbjct: 289 WTKTSGFDERLSKF------LQPVKADSRYAEAYFVARTIYQQVALNNYRYQDFLVLAPN 342

Query: 396 RNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
            +         L +  I         +        + +L     +      +  L+K  L
Sbjct: 343 LSEYETYLTPILRQNQIPFFNDLQREMKYHPLVVAVENLQQIFKRGFQTDNVIALMKTQL 402

Query: 455 A--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
               +           + LE   L                    +    +        + 
Sbjct: 403 FIPDWYKNSARYQNDVDLLENFVLAHGIKGKLWT------KSLKSFVDADVIALDKSEKE 456

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS--DWTKLTVTCLQNVCLDEHR 570
            EE   L    +D + +    L   +  +       +    +     +   +    D   
Sbjct: 457 VEELDRLREYFIDALTKFFEQLDKEEDPQAGVTVFWNFLIKNHVAKRLESWRKEANDTGD 516

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
                  E+   TL+ L    +   +  K +  ++ D++                  + I
Sbjct: 517 LQLAQQPEQVWSTLTDLLKDYLLVAT--KFSVDQFFDLLISGFSEANFSQIPSTLDAVNI 574

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYIG 682
                 +   +  + + G      P+      F S      LN        L+  +K   
Sbjct: 575 SELGMVQGQGYKRVFIIGATSTNLPQIEKIPGFFSSENLEQLNEGNEANGYLEDQQKINN 634

Query: 683 QAAHDF---EMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ-- 736
              +      ++  +  +  +  +    N     S + ++LL L   + F          
Sbjct: 635 LDQNYQFGNALSLASDKIYISYPVINTANEQLEPSIFYKQLLKLTRANEFSQHDLPQNNG 694

Query: 737 ----------------------CYLDWTRKLDYTTK-----------------QPHYKRP 757
                                    D    LD T +                  P    P
Sbjct: 695 DVLTFITNPEASLGYLTYLKNKAATDIESLLDMTEEKIGEIAKNVLEGSSFKNIPQNLSP 754

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
                L       S S+++    + +  +    L L     F+ + D    G  +H    
Sbjct: 755 DLAQQLYGDRIETSVSQLETYYQNSFEYFLNYGLHLKKR--FENELDVIQAGNYYHETFD 812

Query: 818 ELIKKRIN------KNTPEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHS 866
            L+K+           T E    +   +    ++     + L    +    H   + + +
Sbjct: 813 YLVKRIKEKKLNFADLTEEKLGELLIEVREELKEKGRYRQLLNDPFNKYLFHKLDQTTAN 872

Query: 867 FLEHEEKIQSS--IEKIFVNIPAK--MAIESIG------------IHLTGFADRIDLLK- 909
              +     +       +  +       +  +             + L G  DR+DL + 
Sbjct: 873 VAHYWHSSVNKTTFRPQYSELSFGKNQKVSGLSYSWKDDNNKKKIVDLRGKMDRVDLAQV 932

Query: 910 SGFVD--ITDYKTGDNPKKETAQKLI-----DPQLSLEAAALKAGS--FSQIDCRKVANL 960
           +  +   + DYK+      +     +       Q+      LK  +  F+Q     V   
Sbjct: 933 NDRILGEVIDYKS----SAKKFDLGLFANGISMQMISYLEVLKNNNKFFAQGKDLDVLGA 988

Query: 961 FYIRLKQKFK 970
           FY  +    +
Sbjct: 989 FYQNITSSLE 998


>gi|149193950|ref|ZP_01871048.1| hypothetical protein CMTB2_02658 [Caminibacter mediatlanticus TB-2]
 gi|149135903|gb|EDM24381.1| hypothetical protein CMTB2_02658 [Caminibacter mediatlanticus TB-2]
          Length = 734

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 141/408 (34%), Gaps = 67/408 (16%)

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                    +  +G LE+R LNFD +I+   NEGV P  +  + FL+  ++   +L T E 
Sbjct: 385  FDDVDGGKVTAMGVLEARGLNFDGVIVVDFNEGVVPNISDTDYFLNNSIRKKTSLPTRED 444

Query: 680  YIGQAAHDFEMA-NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                  + +      ++ +               SR+L  L +  G +       R   Y
Sbjct: 445  KESLQKNYYYNLFLNSKKIKIAYVKN---EENNPSRFLYELGLNEGEN-------RDFYY 494

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
             +   +     K+  Y        +E + +  + + +  L+      Y + IL++     
Sbjct: 495  SEVLYRFSKPKKRFSYD------GIEFEVKNLTPTSLYDLLECKRRYYFKYILQIKNEIE 548

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
             K      + GT+FHN I ++IK+  N +    + LM++I+    +KE     I   W  
Sbjct: 549  EKD-----NFGTIFHNSIEKVIKEGFNSSDEYFDKLMREILKEKDKKEIF--EIRSKWED 601

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
               K     ++          + F     K+        L    DRID        + DY
Sbjct: 602  KIKKFCE--IDFNRARNYKNVEKFAEYGKKL----GDFILNARFDRIDEE-----FVYDY 650

Query: 919  KTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
            KTG     +                      + ID   +  LFY  + +K  I     + 
Sbjct: 651  KTGS----KE---------------------NNIDKDTLQRLFYNYIFEKPAIFYYIKED 685

Query: 979  KKYSADELS--EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
                 +     +++ K L +++  ++     F   +    K+    EY
Sbjct: 686  NIEDKENNLSPQEAKKELEKLLENIE-----FKVEMTDDIKNCKYCEY 728


>gi|28493486|ref|NP_787647.1| DNA helicase II [Tropheryma whipplei str. Twist]
 gi|28476528|gb|AAO44616.1| putative DNA helicase II [Tropheryma whipplei str. Twist]
          Length = 973

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 115/1000 (11%), Positives = 263/1000 (26%), Gaps = 159/1000 (15%)

Query: 50  YVPTKRAIQELRSEFIEITG-----KKSTILPIIKSLG--DVVEEKFTADLLLSYNLNP- 101
              T++A  EL S   +            + P I  L         +  + LL  +  P 
Sbjct: 70  LTFTRKAAGELASRLQKSLAILNSYTGDVLSPEIDVLTYNSFANSIYQDNALLLDHPVPY 129

Query: 102 -PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI--IDI 158
             + + +  L   RL++     L +       ++  S  I   +AI    NL D+  ++ 
Sbjct: 130 TAIEDSEAQLIARRLLVEH--GLDEDEPSETIDNLASSLIKLDDAI--VDNLLDLGELNQ 185

Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
             +E  ++         K  ++       L        +        S        +   
Sbjct: 186 FASEFIEFVGAFDAPVAKSDVFRAKRLIALSKLIPALKDEKKLRGRISYSEQVAFALEVC 245

Query: 219 AE----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
            +       +     +++     + P     + T+    N   VL   D       +   
Sbjct: 246 RQTHVLAEFQEKIAYVVLDEYQDTSPIQVEFLKTIFG--NRCRVLAVGDPRQAIFGFRGA 303

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
           +  +    + +   +             L I   + K + ++                  
Sbjct: 304 SVANIANFARDFVSNKQY---------ELSISWRNDKNILDL------------------ 336

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
                  +  +    P  +      +L    +  +E    A+ L   +++    +A++T 
Sbjct: 337 ---ANHISPKIRPLHPRPEANDGSTSLEVYTDPEQEVHEGALWLNSVVEKG--TAAVLTR 391

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
            R+    V   L   G++    A + +        + S +  I  +N+ ++   L+  P 
Sbjct: 392 TRSRLISVSRVLDEIGVSYTR-ADVNIFYEPEVVDILSCMRIISGVNENLSFLRLITGPR 450

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
            + G  + +  R                   + +    LDRI+  +    +   ++ +S 
Sbjct: 451 WQVGISDLHALR-----------------GYIAVGKKNLDRISLLEAVNRINIQKTPMSC 493

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           E K+     ++   + I  L      + +     S++   +                   
Sbjct: 494 EGKKRLEDFLEFFRK-IKGLSFLSPLELAYLIEESLNLDIE------------------- 533

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS--STLFILG 632
           +     G+       ++I +      + +  +     L + +  +   ++S    + +  
Sbjct: 534 VQMSHRGRENLDALYELIASFRGDNLSEM--LAWFDSLEEEDAFRGPTKQSCPGQVELFT 591

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPF----------------------------- 663
              ++ L +D ++L  L++                                         
Sbjct: 592 VHSAKGLEWDWVLLPFLDDFPAKSREKSGWLSKTGLLPFCLRLDRESLPEFYFHKCSDSK 651

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
             R  +        +  I +      +A          S      P    R +   L   
Sbjct: 652 EYRAARRQYEDDVLQHQIREERKLLYVAVTRARQGLRISASARQKPGQFLREISEFLQTD 711

Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND-- 781
                 N  K+   Y           +            +E    +     +K LI    
Sbjct: 712 LPQAVHNNPKKRVGYWPLDSLGARRKRVKLAAAAVHNRSIEESEESLKKEPLKALIAGML 771

Query: 782 ------------PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
                         +  A      +     +        G  FH  I        +    
Sbjct: 772 KELDISVDKPEKRISATALSKKDPNVFLLPQPPIKNAWLGVAFHAWIENYYSTYSDMLFH 831

Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
           E +     I    FE+          +     ++ H+F++ E    S  + I V +  + 
Sbjct: 832 ENSADEYGISGPVFEQS-------QRFSPELDQLRHNFMQSEW---SYKKPIAVELSLEW 881

Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
            I    + +    D +         I D+K+G +  +         QLSL   A     +
Sbjct: 882 LI--GDVIVPCTIDAVFFDGD-RYTILDWKSGLSSNQ------YRIQLSLYRLAFAE--W 930

Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
             ++  KV    Y     +          +          
Sbjct: 931 KGVNPDKVEAKIYFAADNRTIKVRPYTVDELGKMPGFLSD 970


>gi|255323064|ref|ZP_05364200.1| conserved hypothetical protein [Campylobacter showae RM3277]
 gi|255299926|gb|EET79207.1| conserved hypothetical protein [Campylobacter showae RM3277]
          Length = 860

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 81/296 (27%), Gaps = 40/296 (13%)

Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
            R       A   L            +      Q  ++          +P          
Sbjct: 576 ERSLFEFGEAESELNLADKFDEKAAQNKTLSEKQQAVNLINFTRKMPAKPKIFEQDIIVK 635

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            +      SFS +   +  P   Y R IL +       +     D G   H  + E   K
Sbjct: 636 HDFFAIPLSFSRLNTYLQCPRRYYYRYILGVKPPVMP-QTASAADFGNSLHRALFEYYSK 694

Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKI 881
               +  +         ++   + N PP    I      K    F   E+   +S     
Sbjct: 695 FDRFDLAK--------FETVLRELNTPPLEREITMIKMEK----FKAVEDARYESGWRVK 742

Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
            +           G+ +TG  DRID+   G + + DYK+G              QL    
Sbjct: 743 GLEKELDSVFA--GVRITGKIDRIDVCG-GELAVIDYKSGK-------FDAKSLQLPFYE 792

Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
           A +           +    ++  LK         N     ++ +   ++++ L  I
Sbjct: 793 ALV----------GRPCEGYFYDLKDN------MNLVAGEASTDALAEAIEQLKSI 832


>gi|59801717|ref|YP_208429.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae FA 1090]
 gi|59718612|gb|AAW90017.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae FA 1090]
          Length = 1068

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 102/876 (11%), Positives = 220/876 (25%), Gaps = 69/876 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L    I V ++   + L +      G  + +     SL   +  K    L+       P
Sbjct: 29  ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +       L  L      +     +D+       L    +    LA  LADI D     
Sbjct: 86  FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +W D               W             W  R ++    S         +  A
Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       + G +   P   +L+  ++ H +  +             W  + E + 
Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +        T   + L   L        D      +  E          + L    +D+
Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
           +N  +    + ++      + ++ A +   E   +   L   L E+        A++T +
Sbjct: 311 QNLKMPSENVGSVGTDDGSICIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370

Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                     +          +   +S             L  + + +    +   +  L
Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430

Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++             +  L     A   V    +       D                 +
Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAADRMILGWML 490

Query: 506 PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
           P   + + ++       +    +       L T            ++ +W       L+ 
Sbjct: 491 PEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +          +   E          +    G   +      I  I R +D E+      
Sbjct: 551 LFQAGPDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R L F  + L GLN+G +P+NT    F           +        
Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                E     R  L  +   R+   +    +S  L  L+         N ++  Q +++
Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMTGTNSRQLAQNWIE 724

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                        Y +           RT   + + Q    P   + + +   + +    
Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIG 781

Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
           +D                  +  +     ++      I ++    E   P          
Sbjct: 782 QDE------------FIRFWRNPVKVWLQQLAWSEPHIGEAWEPAEPFEPQH-------A 822

Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
            +I+ +++    +      +    I A+  + S  +
Sbjct: 823 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 857


>gi|145596260|ref|YP_001160557.1| UvrD/REP helicase [Salinispora tropica CNB-440]
 gi|145305597|gb|ABP56179.1| UvrD/REP helicase [Salinispora tropica CNB-440]
          Length = 1144

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 108/1049 (10%), Positives = 237/1049 (22%), Gaps = 162/1049 (15%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITG------KKSTILPIIKSLGD----VVEEKFTADLLL 95
             V     T++A  EL        G       ++   P+   L           +   ++ 
Sbjct: 83   QVLGLTFTRKAAGELAHRVRTRLGQLVRRLGRNGRHPLDDPLSGEPTVATYHSYAGRVVT 142

Query: 96   SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155
             + L        RLL  A       + +         E            + LA  L + 
Sbjct: 143  EHGLRAGYEPATRLLTEASRWQ-LVDLIVRTYDGDMSEVDRMPSTVTDAVLALAGELDEH 201

Query: 156  IDI----IETEEKKWEDLH------ALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
            +           + + D+            +      +    L +  + +  R  +  A 
Sbjct: 202  LVEPDHLSAWTGRFFADVQSRPGRVYADVRRALTLAQVRLKLLPLV-RAYARRKEDFEAM 260

Query: 206  SPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                      R   +H     + +     +++     +  A   L++ +     G  V  
Sbjct: 261  DFADQLARAARVARDHPVVGEIERDRYRVVLLDEYQDTSHAQVVLLNALFG--GGHPVTA 318

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              D       W   +  + +   +    +      +  L      + E +     ++  +
Sbjct: 319  VGDPCQSIYGWRGASAGTLDRFRTEFAQTDGAPAQVRTLTTSWRNRPEILGVANALATPL 378

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
                  + +        +                    V         +EA  IA +L  
Sbjct: 379  RAAGARVPELRAALSVKEPIPHRTPRGF------AAGTVHCALLSTYADEADWIADSLLR 432

Query: 381  SLD---------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            +                   +  +A++   R+    ++  L   G+ +D+     L  T 
Sbjct: 433  AWQGAAGTPGVMPEHLPVVARPTTAVLVRLRSQIPAIESALRARGLPVDVVGLGGLLDTP 492

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                +   L  +    D  A+  L+     + G  +      +      A R      + 
Sbjct: 493  EVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRARAIAAARRQLAADDEP 552

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              +  ++    AT              S E           +      L     +  +  
Sbjct: 553  EIVPDVLD--EATLVEALADLGPAPAYSAEGYARLRAAAQELGLLRYRLDQSLPDLIADV 610

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
                  D                  +       +     S       ET     +  + +
Sbjct: 611  ERTIGLDVEVAVRAGRDGAGDAGLARGHLDALGDVAARFSG------ETPGATLSAFLAY 664

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL- 664
            +        G            + +L    ++ L +D + + GL+ GVWP     +    
Sbjct: 665  LAAAEDEERGLAPGEVEVVEGAVQVLTAHAAKGLEWDVVAVAGLSRGVWPGPVRNSDHWL 724

Query: 665  -----------------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
                                       Q  +    A+      AHD        ++  TR
Sbjct: 725  GGLGVLPFPLRGDADGLPVLALAEAEEQRGVAQALADFTAAWRAHDEREERRLAYVAVTR 784

Query: 702  SLR-----------ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
              R               P   S  L+ +           +                T  
Sbjct: 785  PRRLLLCSGHWWGEGTKRPRGPSALLRDVHQACLNGGAGQVVDEWAAEPAPDAVNPTTEV 844

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP---------------------------- 782
                + P             + + +++ + D                             
Sbjct: 845  VLRAEWPADPLGARRPVLAEAATLVRRYLTDGVPTRPASGGVTAAGPPVPGASDSVADDP 904

Query: 783  -------YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
                           L L       +     +        ++      + ++   +   +
Sbjct: 905  GGDDPEVVRWRREADLLLAERAELTRQAGPIEV--ALPAALSVTQLVTLRRDPAALARSL 962

Query: 836  KQIIDSHFEKENLPPHIDIIWRH--------------------------LFHKISHSFLE 869
            ++ + +              W                               ++   FL 
Sbjct: 963  RRPLPTEPNPYARRGTAFHTWLEQRFGAGRLLDVDELPGAADADAAPDEALAELQERFLA 1022

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
             E   +       V +P    I   G+ + G  D +     G  D+ D+KTG  P    A
Sbjct: 1023 SEWADR---TPAEVEVPFATVIA--GVVVRGRMDAVFGRPGGRFDVVDWKTGRQPTGA-A 1076

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
                  QL++   A    +   +     A
Sbjct: 1077 AAAAAVQLAVYRLAWAELAGVSVAQVGAA 1105


>gi|255305966|ref|ZP_05350138.1| ATP-dependent nuclease subunit B [Clostridium difficile ATCC 43255]
          Length = 1155

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 86/255 (33%), Gaps = 34/255 (13%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             + S S +++    P+A + +  LK       +      D GT  HNI+    K+ +  N
Sbjct: 780  NSLSISRLEKYAECPFAYFIQYGLKAKKRK--EYSFTPPDLGTFIHNILDRFSKELLQDN 837

Query: 828  TPE-------INHLMKQIIDSHFEK---ENLPPHIDIIWRH-LFHKISHSFLE--HEEKI 874
                      I   +  I+D    K     L       +       +  + +    ++  
Sbjct: 838  LTWRDIDEKYIELKIGIIVDEIILKIPGYILNSSERYKYLAYRLKNMLTTAITIISQQIK 897

Query: 875  QSSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLKSGF---VDITDYKTG 921
            Q S E I   +           KM +E    + L G  DR+D  + G    + I DYK+G
Sbjct: 898  QGSFEPIDYEVKFGNNGKYPPIKMVLENGQEVSLIGQIDRVDEFEEGENKYIRIIDYKSG 957

Query: 922  -DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
              +         +  QL +   A+   +  +      A + Y R+        I    + 
Sbjct: 958  NKSISLTEIYYGLQLQLLVYLDAILESAKDEDININPAAILYCRINN-----PIAKFNED 1012

Query: 981  YSADELSEKSLKNLI 995
               +E+ E  LK L 
Sbjct: 1013 KDDEEIQEAILKELR 1027


>gi|255100076|ref|ZP_05329053.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-63q42]
          Length = 1155

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 86/255 (33%), Gaps = 34/255 (13%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             + S S +++    P+A + +  LK       +      D GT  HNI+    K+ +  N
Sbjct: 780  NSLSISRLEKYAECPFAYFIQYGLKAKKRK--EYSFTPPDLGTFIHNILDRFSKELLQDN 837

Query: 828  TPE-------INHLMKQIIDSHFEK---ENLPPHIDIIWRH-LFHKISHSFLE--HEEKI 874
                      I   +  I+D    K     L       +       +  + +    ++  
Sbjct: 838  LTWRDIDEKYIELKIGIIVDEIILKIPGYILNSSERYKYLAYRLKNMLTTAITIISQQIK 897

Query: 875  QSSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLKSGF---VDITDYKTG 921
            Q S E I   +           KM +E    + L G  DR+D  + G    + I DYK+G
Sbjct: 898  QGSFEPIDYEVKFGNNGKYPPIKMVLENGQEVSLIGQIDRVDEFEEGENKYIRIIDYKSG 957

Query: 922  -DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
              +         +  QL +   A+   +  +      A + Y R+        I    + 
Sbjct: 958  NKSISLTEIYYGLQLQLLVYLDAILESAKDEDININPAAILYCRINN-----PIAKFNED 1012

Query: 981  YSADELSEKSLKNLI 995
               +E+ E  LK L 
Sbjct: 1013 KDDEEIQEAILKELR 1027


>gi|254974591|ref|ZP_05271063.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-66c26]
 gi|255091982|ref|ZP_05321460.1| ATP-dependent nuclease subunit B [Clostridium difficile CIP 107932]
 gi|255313716|ref|ZP_05355299.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-76w55]
 gi|255516398|ref|ZP_05384074.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-97b34]
 gi|255649497|ref|ZP_05396399.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-37x79]
 gi|260682664|ref|YP_003213949.1| ATP-dependent nuclease subunit B [Clostridium difficile CD196]
 gi|260686263|ref|YP_003217396.1| ATP-dependent nuclease subunit B [Clostridium difficile R20291]
 gi|260208827|emb|CBA61745.1| ATP-dependent nuclease subunit B [Clostridium difficile CD196]
 gi|260212279|emb|CBE03028.1| ATP-dependent nuclease subunit B [Clostridium difficile R20291]
          Length = 1155

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 86/255 (33%), Gaps = 34/255 (13%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             + S S +++    P+A + +  LK       +      D GT  HNI+    K+ +  N
Sbjct: 780  NSLSISRLEKYAECPFAYFIQYGLKAKKRK--EYSFTPPDLGTFIHNILDRFSKELLQDN 837

Query: 828  TPE-------INHLMKQIIDSHFEK---ENLPPHIDIIWRH-LFHKISHSFLE--HEEKI 874
                      I   +  I+D    K     L       +       +  + +    ++  
Sbjct: 838  LTWRDIDEKYIELKIGIIVDEIILKIPGYILNSSERYKYLAYRLKNMLTTAITIISQQIK 897

Query: 875  QSSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLKSGF---VDITDYKTG 921
            Q S E I   +           KM +E    + L G  DR+D  + G    + I DYK+G
Sbjct: 898  QGSFEPIDYEVKFGDNGKYPPIKMVLENGQEVSLIGQIDRVDEFEEGENKYIRIIDYKSG 957

Query: 922  -DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
              +         +  QL +   A+   +  +      A + Y R+        I    + 
Sbjct: 958  NKSISLTEIYYGLQLQLLVYLDAILESAKDEDININPAAILYCRINN-----PIAKFNED 1012

Query: 981  YSADELSEKSLKNLI 995
               +E+ E  LK L 
Sbjct: 1013 KDDEEIQEAILKELR 1027


>gi|126698624|ref|YP_001087521.1| ATP-dependent nuclease subunit B [Clostridium difficile 630]
 gi|122379796|sp|Q18AP0|ADDB_CLOD6 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|115250061|emb|CAJ67881.1| ATP-dependent nuclease subunit B (ATP-dependent helicase addB),
            Superfamily 1 UvrD-family [Clostridium difficile]
          Length = 1155

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 86/255 (33%), Gaps = 34/255 (13%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             + S S +++    P+A + +  LK       +      D GT  HNI+    K+ +  N
Sbjct: 780  NSLSISRLEKYAECPFAYFIQYGLKAKKRK--EYSFTPPDLGTFIHNILDRFSKELLQDN 837

Query: 828  TPE-------INHLMKQIIDSHFEK---ENLPPHIDIIWRH-LFHKISHSFLE--HEEKI 874
                      I   +  I+D    K     L       +       +  + +    ++  
Sbjct: 838  LTWRDIDEKYIELKIGIIVDEIILKIPGYILNSSERYKYLAYRLKNMLTTAITIISQQIK 897

Query: 875  QSSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLKSGF---VDITDYKTG 921
            Q S E I   +           KM +E    + L G  DR+D  + G    + I DYK+G
Sbjct: 898  QGSFEPIDYEVKFGDNGKYPPIKMVLENGQEVSLIGQIDRVDEFEEGENKYIRIIDYKSG 957

Query: 922  -DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
              +         +  QL +   A+   +  +      A + Y R+        I    + 
Sbjct: 958  NKSISLTEIYYGLQLQLLVYLDAILESAKDEDMNINPAAILYCRINN-----PIAKFNED 1012

Query: 981  YSADELSEKSLKNLI 995
               +E+ E  LK L 
Sbjct: 1013 KDDEEIQEAILKELR 1027


>gi|77919306|ref|YP_357121.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Pelobacter
            carbinolicus DSM 2380]
 gi|77545389|gb|ABA88951.1| ATP-dependent exoDNase (exonuclease V) beta subunit [Pelobacter
            carbinolicus DSM 2380]
          Length = 1118

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 81/802 (10%), Positives = 181/802 (22%), Gaps = 113/802 (14%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIA 233
                  L  A         E      V   +A  RA  E                 I++ 
Sbjct: 361  EALTTLLPRAVAELWLVFKEQGQCDFVEVALAAGRALGEVDAPTDLLLHLDSRIRHILVD 420

Query: 234  GSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
                +      L+  +       +G  +    D       +             +  +  
Sbjct: 421  EFQDTSWGQFLLLKKLTAGWQQGDGRSLFLVGDPMQSIYRFREAEVGLYLQARHHGIHQL 480

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
              +               D                 +         +     D       
Sbjct: 481  RLEALYLSTNFRSQAGVVDWVNRVFPELFPPREDEALGSVTYAASVAARDVLDGPAVTCH 540

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRVKLELTRF 409
             +               R EA+ +   +R +   + +   A++   R    ++       
Sbjct: 541  PMAGRDD----------RAEALQVVDLVRQARRADPEGTVAVLVRARTHLSQILTAFREA 590

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            G+         L+    +  L +L  A+    D +A   +++ P       + +      
Sbjct: 591  GLPFRAQEIDALADRSVAQDLLALTRALLHPGDRVAWLAVLRAPWCGLSLADLHALC--- 647

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                                                P           +  + +      
Sbjct: 648  ---------------------------------GETPDATLPELLRQPQRLMRMSADGRM 674

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             +   +       S  G +S+    +     L            +     + + L  L  
Sbjct: 675  RVERCLGVLNQSLSQRGRVSLRMLVEGAWLAL------GGPGCLDDAGLVDAEALFGLLD 728

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            ++   G  +          +   +      P      TL ++   +++ L FDT+IL GL
Sbjct: 729  QLDYGGDMLPMEG------LADKLSKLFAAPDPAADDTLQVMTIHKAKGLEFDTVILPGL 782

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY--------------------IGQAAHDFE 689
                  ++     +L       L    A                       +  A   + 
Sbjct: 783  GRRPRTEDAPLMRWLELPETGLLLAPLAPLDGQSRDPIYDAIGRVEKQKCDLEIARVLYV 842

Query: 690  MANGTRHLI--YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
             A   +  +     +    +     S         GG+         G  +     +L  
Sbjct: 843  AATRAKKRLHLLGYARPSRDGEFRPS---------GGSFLEKLWPAVGDRFDGLNPELTD 893

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
            ++  P   R       +        +  +  +            +   +    +  D   
Sbjct: 894  SSDAPKTVRQMRLLGSDWVLPALPSTSAQSSMEVLSPSSTAHHSQGTTLMPETE--DGRH 951

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
             GTL H  +  +  + +   +       +  +     +  +     +       +   + 
Sbjct: 952  IGTLVHACLERIANEGLEHWSIGRVEKERPTLCHRLGRMGVAVDRCMQAADRIVEAVSNT 1011

Query: 868  LEHEEKIQ--SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925
            L  +         EK    +     ++     +    DR  + K G   + DYKTGD+  
Sbjct: 1012 LNSDRGRWILGKHEKSACELSLSGVLDGR--IIHAEIDRTFVDKEGVRWVVDYKTGDSKG 1069

Query: 926  KE------TAQKLIDPQLSLEA 941
                        +   QL L A
Sbjct: 1070 MADDVFFEQQAHIYKGQLELYA 1091


>gi|324114887|gb|EGC08853.1| exodeoxyribonuclease V [Escherichia fergusonii B253]
          Length = 1122

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 108/973 (11%), Positives = 243/973 (24%), Gaps = 121/973 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMALSQKFGIAANIE---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         +      +L  L+  W ++    +        L+  
Sbjct: 63  PLPASFIWDMFVRVLPEIPKESAFNKQSMTWKLMTLLPQWLDREDFTLL----RHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D       +W     A K         +    L  A   +T  
Sbjct: 119 SDKRKLFQLSARAADLFDQYLVYRPEWLSQWEAGKLVDGLGEAQVWQAPLWKALVEYTAE 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             +                + I G +   P   + +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         K                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRKGVDAEKLFNSEGEQDVGN 297

Query: 299 -LLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342
            LL        D   L +  +        +                +             
Sbjct: 298 PLLASWGKLGRDYIYLLSDLDNSQELDAFVDITPDNLLHNIQSDILELENRAVAGVNIEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +K   +    + V      + + E   +   L   L+E+     +   ++ AD + 
Sbjct: 358 FSRSDKKRLLDPQDNSVTFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         +   IS      +        +LL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFITLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +    F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L  
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDAETEAA--MTLIEQQWQAVIAQGLGAQYNEAVPLSLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A   F   +M          +    
Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPRRGDRSRRDDD 712

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF------------ 728
                E     +  L  +   R   +N     S  +Q L+   G   +            
Sbjct: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772

Query: 729 ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPRTY 770
                         +    Q YL   ++       P   +          P     P T 
Sbjct: 773 EAKVKAHITCMHTRMPFDPQNYLPGEQQSYAREWLPAASQSGEAHSDFVQPLPFEMPSTL 832

Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827
               +++    P   + +  L+++F     + PD       G   + I  +L+   + + 
Sbjct: 833 LLESLQRFWAHPVRAFFQMRLRVNFRAQESEIPDTEPFTLEGLTRYQINQQLLNTLVEQ- 891

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
             +   L ++        E        I      +      +     +            
Sbjct: 892 -EDSERLFRRF---RAAGELPYGAFGEILWETQCQEMQQLADRVIACRLPG------QSM 941

Query: 888 KMAIESIGIHLTG 900
           ++ +   G+ LTG
Sbjct: 942 EVDLNCNGVQLTG 954


>gi|307322014|ref|ZP_07601393.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
            AK83]
 gi|306892352|gb|EFN23159.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
            AK83]
          Length = 1189

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 110/919 (11%), Positives = 242/919 (26%), Gaps = 84/919 (9%)

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            G  +++     L L       +++  R +          +KL ++  +   +        
Sbjct: 262  GPALDDYIDLGLRLGGAKPSAIADGLRAVRAIDDAATRYSKLVELFFNGGGKPKAESAFL 321

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF-LKIASKYWTERLV 200
             A     A  L   ++   +      D  ++          L     L    +   +   
Sbjct: 322  NAAMRRAAPQLELRVEEARSHMLACVDRLSIVQMYGATRAALVLAERLNRDYEALKKARS 381

Query: 201  ELNASSPVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN---- 251
            +L+    +    AL+      A   + +      I++  +  + PA   ++ ++A     
Sbjct: 382  QLDFEDLIHRTAALLARSDVGAWVHYKLDQGIDHILVDEAQDTSPAQWTIIQSLAADFFA 441

Query: 252  ----HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH----------PQYSLA 297
                  +   +    D       +     +  +  S+ T                Q S  
Sbjct: 442  GETARADDRTIFAVGDEKQSIYSFQGARPERFSRESTLTERRVRAGNKHFSPIRLQLSFR 501

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
              +D L          GN          ++  S        +   D++  +    ++ ++
Sbjct: 502  STVDVLSAVDTVFANPGNARGLSARSEAIVHASNRIGQPGAVDLWDVIAPEPAASEEDWT 561

Query: 358  DVALIEADNEREEAISIAIALRMSLDEN-----------------KKKSALITADRNLAR 400
              A  +A  ER     +A  +   L++                       L+        
Sbjct: 562  --APFDATPERAPVNILARRIAAVLEDWIGRETVIEKGVRRAMRPGDVIVLVRKRDAFVN 619

Query: 401  RVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
             +   L  R  I +  +  + L++ +    L +L   +    D +++A L+K PL   G 
Sbjct: 620  ALTRALKRRGNIPVAGADRLVLTSHIAVQDLIALGRFVLLPEDDLSLAALLKSPLLDLGE 679

Query: 460  PEKYLSRAKNALELVALRGNKN----SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             + +   A+        R  +                L R +          + +R+   
Sbjct: 680  EDVFELAARRTEGESLWRRLRQAGAEETSRYHEAVRTLSRYSGLARELLPHDFYARVLGA 739

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNS-----TCGNLSISDWTKLTVTCLQNVCLDEHR 570
            D      L     +    L  + T           G  +     ++    ++    D+ R
Sbjct: 740  DGGRRAFLARLGSEVSDILDEFLTFALDHERNGLPGLQAFISTLEIEAPTVKRE-QDKER 798

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
                +      K L +    +++ G                 ++   V            
Sbjct: 799  DEVRVMTVHAAKGLEAPVVFLVDGGGEAFVRQQVSDLRF---LEKAQVDHSTLTVPVWRA 855

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
             G+  + L+  D   L  L E  + +        +         +   +      H    
Sbjct: 856  PGSAPNSLIAADNERLKKLAEEEYRRLLYVGMTRAADRLIVCGYRGQRQNTDTW-HSMVQ 914

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
                + L    + R     +   + +         D   +  +  +              
Sbjct: 915  GTLAQDLKGRGTPRLFRAGSEEWQGIAWREAHVPRDLPTSEGRSEESQRPTAGLPTALFT 974

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
             P   R  P P         + S     I+DP A       ++                 
Sbjct: 975  PPAAPRRLPRP--------LAPSGTTIAIDDPDA-------EVIVGSALFAGKSAPKFSM 1019

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
            L   I+  L++   + + PE     ++ +          P      R          L+H
Sbjct: 1020 LRGAILHRLLQVLPSVDGPERLAAAERYLARSV------PRWPEAERRALAGTVMDVLDH 1073

Query: 871  EEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKK 926
             +      E     +     + +      ++G  DR+ +     V I DYKT        
Sbjct: 1074 ADLQPLFGEHSRAEVSVMGTLKLGVREFAVSGRIDRLAVTGD-MVTIADYKTNREIPETP 1132

Query: 927  ETAQKLIDPQLSLEAAALK 945
            E    +   QL++    LK
Sbjct: 1133 EEIAPVYRNQLAIYRELLK 1151


>gi|21673894|ref|NP_661959.1| exodeoxyribonuclease V, gamma subunit [Chlorobium tepidum TLS]
 gi|21647032|gb|AAM72301.1| exodeoxyribonuclease V, gamma subunit [Chlorobium tepidum TLS]
          Length = 1065

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 97/912 (10%), Positives = 219/912 (24%), Gaps = 92/912 (10%)

Query: 49  IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
           I V ++   + L        G  +           +++  F    L         S    
Sbjct: 35  IVVQSRGMQRWLSMRLASQFGVWAGA--EYPFPNALIQRLFEWLELSKQADTERFSKETI 92

Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
              L R +     +           + L           L+  +AD  D           
Sbjct: 93  SWSLMRFLPDLLERDSFAPL----RAYLDGDRDGLKLFQLSGRIADTFDQYTLFRPDLLA 148

Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR-AEAEHLMKGTK 227
                 +     W           + W   + E +       Q A +R      L     
Sbjct: 149 AWEAGGDDAARDWQP---------ELWRALVAEHSGKHRGQLQSAFLRKVRTTRLPADFP 199

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
             I + G +   P    ++  +A      + L        T I +       + +    +
Sbjct: 200 KRISLFGVSYMPPYHIEILQALAVRIPVNLFLLSPTREFWTDIVSRRRLFRMSESERALS 259

Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT----- 342
              +P      LL  L     +   L      +     +            +++      
Sbjct: 260 VEGNP------LLASLGKSGREFAELLLDVGNVEDEYDLYDDPGTATLLRALQSDILNLR 313

Query: 343 -DILENKIPNIQKCFSDVALIEADNEREEAIS----IAIALRMSLDENKKKSALITADRN 397
            D  + + P        V +    N   E       +   L        +   ++T D  
Sbjct: 314 GDGTDGRHPMPDASDCSVQVHSCHNPLREVEVLHDNLLDLLDKLPGLEPRDIVVMTPDIE 373

Query: 398 LARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
                   +          +   I+    L     +  +  LL      +   A+  L+ 
Sbjct: 374 TYAPYIATVFGASGPEEPRLPHSIADRRMLDEGGVAPAILKLLELYGSRHTAPALFDLLS 433

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD--------LKSLVLDRIATQKNNT 503
            P     F             +   R      +            ++     +       
Sbjct: 434 SPPVSRHFRLGEEELDTVRRWIKETRIRWGMDEGARSKLGLPPFRENSWRAGLERLLLGY 493

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
            +P      +           + + +    +            +  + +W       L+N
Sbjct: 494 AMPDEGRLFNGVLPFEVAGDAETLGKLADFIDAVDQLSTRFSRSRPLGEWRNHFFWMLEN 553

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
               +      L   +      +  ++   +    + +A   I  +   ++   +     
Sbjct: 554 FIEADADSERELAHVKSEIDSLTSLAE--NSRFEGEVSAQVMIAWLRGRLEQFEMGLGFM 611

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     L  R + F  + + G+N+G +P+      F     +     ++       
Sbjct: 612 TG-GITFCAMLPMRSIPFRVVAMIGMNDGAFPRQQRPPGFDLLAREPRKGDRSVRGDDRY 670

Query: 684 AAHDFEMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                E     R +   +   +    N P   S  +  LL      F     +     L 
Sbjct: 671 --LFLESLLSARDVFYLSYVGQSVRENTPLPPSVLVSELLDAIERGFEFPEGEDAASRLV 728

Query: 741 WTRKLD-----------------------YTTKQPHYKRP---KPFPPLEAQPRTYSFSE 774
              +L                           +    +RP   +P      + RT +  +
Sbjct: 729 VQHRLQGFSPAYFTKGSSLFSYSADNFKALAGRNSLAERPFIEEPLNGFTDEDRTVTLDD 788

Query: 775 IKQLINDPYAVYARRILKLDF---IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
           + +   +P A +  R L L     +   ++       G   + +  EL++  +  +    
Sbjct: 789 LARFFANPAAYFLERRLGLKPSAAVEPLEEREPFEVAGLERYAMRQELLEAVLEGHDGCA 848

Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
              M  +  S       P     +           F    ++++       +     + +
Sbjct: 849 ---MLPLFRS--RGLLPPATHGELLFRKLLVEVEEFATKVQELKGGGTFSQL----DIDL 899

Query: 892 ESIGIHLTGFAD 903
           +  G  LTG  D
Sbjct: 900 DIGGFRLTGKLD 911


>gi|114319964|ref|YP_741647.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114226358|gb|ABI56157.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 1184

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 105/901 (11%), Positives = 221/901 (24%), Gaps = 87/901 (9%)

Query: 40  NPLLLASVTIYVPTKRAIQELRSEFIEI----------TGKKSTILPIIKSLGDVVEEKF 89
            P  L + T+ V +    Q L                     S  LP   +     E   
Sbjct: 33  PPAPLETETVLVQSNGMAQWLSHALAAHPESEEPGCGIAAGLSMQLPARFTWTAYRE--- 89

Query: 90  TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
               +L +   PP S   +     RL+ +    L D          L+          LA
Sbjct: 90  ----VLGHEAVPPESPFDKRPLTWRLMRLLPE-LIDEPGFEPLRGFLARDDDRRKRHQLA 144

Query: 150 KNLADIIDIIETEEKKW--EDLHALKNEKYGMWWLLAADFLKIAS-KYWTERLVELNASS 206
           + LAD++D  +     W  +                  D  +    + W   L +++ + 
Sbjct: 145 ERLADLLDQYQVYRADWLVDWAQGHDQCAGPGRAPRPLDARERWQPRLWRALLADMDEAE 204

Query: 207 PVGYQIALMR------AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
               + A+         E +    G    +I+ G +         +  +A+     + + 
Sbjct: 205 RGLSRAAIHARYREAVRELDRRPAGLPRRLIVFGISSLPHQVLEALEALADFTQILVCVH 264

Query: 261 GLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
               H    I             +            S    ++   L  +    R+ ++ 
Sbjct: 265 NPCEHYWADIVADKDLLRARRRRQSPKPGMPERLDDSELHNHAQPLLAAWGKQGRDYIRL 324

Query: 313 LGNVSNEMYGRSMVISKSF-----------------LPPDTSDMRNTDILENKIPNIQKC 355
           L    +  + R ++ S S+                 L  D  ++R         P +   
Sbjct: 325 LDEHDDPAHYRHLIESLSWQRIDLFRPHGGDCLLHQLQDDIRELRPLAETRAAWPPVAAD 384

Query: 356 FSDVALIEADNEREEAISIAIALRMSLDE------NKKKSALITADRNLARRVKLEL--- 406
            + +    A + + E   +   L    ++        +   ++  D +        +   
Sbjct: 385 DASIQFHIAHSPQREVEILHDRLLGRFNDASRPTLRPRDVIVMVPDIDRYAPHIQAVFGQ 444

Query: 407 ----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFP 460
                   I   +S             L  LL+          +  L+  P    +FG  
Sbjct: 445 TEPGDPRHIPYTLSDQGRRGRDTVLIALEQLLHLPESRCAVSELLDLLDVPALRRRFGLE 504

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLS 513
           E  L R     E   +R   ++     L              +        V   ++   
Sbjct: 505 EGDLQRLHRWAEGAGVRWGLDAEQRAHLDLPAGLTLHTWRFGLRRMLLGYAVGSGEAWHG 564

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            E  +    L   +L  +  L+       +              +  L   C +   +  
Sbjct: 565 VEPYDEVGGLDAALLGPLEQLLATLEAAWARLREAHAPAVWGEHLRWLLAACFEPGNEEE 624

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            L  E   +TL    +                 +     +D   +  +    + +     
Sbjct: 625 ALTLERLQQTLEQWTADCEAAALDEPLPLNVVREHWLAGMDEGGLSQRFLAGA-VNFCTL 683

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
           +  R + F  + L G+N+G +P++     F           ++  +          + + 
Sbjct: 684 MPMRAIPFRLICLLGMNDGDYPRSPTPLDFDLMADDYRPGDRSRREDDRYL-FLEALLSA 742

Query: 694 TRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
              L  +   R   +N P   S  + +L       +            +    L++ T  
Sbjct: 743 REQLYISWVGRSVRDNEPQPPSVLVGQLRDHLAAGWRLAGPVDEPSTPETAALLEHLTLA 802

Query: 752 PHYKRPKPFP------PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
              +   P        P              Q           R             PD 
Sbjct: 803 HPLQPFSPVHFPVAGGPGARHFTYAREWRAVQAAAAGAEEGEVRPGIDRPDNEPLPPPDP 862

Query: 806 TDRGTLFHNIITELIKKRINKNTPEINH---LMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
              G L    +   +++ +               +      E   +        R    +
Sbjct: 863 DQAGVLAPGTLARFLQRPVRAFFERRLSVHFDEDEAASEDLEPFTVDGLTRWQLRERLVQ 922

Query: 863 I 863
            
Sbjct: 923 A 923


>gi|307298415|ref|ZP_07578218.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915580|gb|EFN45964.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 969

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 119/1000 (11%), Positives = 261/1000 (26%), Gaps = 143/1000 (14%)

Query: 46  SVTIYVPTKRAIQELRSEFIE------ITGKKSTILPI--------IKSLGDVVEEKFTA 91
           +V     T +A +E++   I        +G   +  P+        I ++    E     
Sbjct: 41  NVVAITFTNKAAREMKDRVITEIDHRIASGHPGSWKPLRNKMSYAWISTIHSFCERILRE 100

Query: 92  DLL-LSYNLNPPVSNIQRLLELAR-LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
             L    +    + +  R   L   ++  +     + ++      PL        A  + 
Sbjct: 101 SALFAGIDPGFQILSGMRRATLEEKVVRTYFEDNLESLE------PLIQLTGLDKAFRIV 154

Query: 150 KNLADIIDIIETEEKKWEDLHALK------NEKYGMWWLLAADFLKIASKYWTERLVELN 203
           K    I     +       + +L       +++        A         + +R V   
Sbjct: 155 KE--AISSKRHSLALNPSPVGSLLGDSIISDDEIIEGSKSFAAAYSEILSDYRDRTVRSG 212

Query: 204 ASSP----VGYQIALMRA-EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                      +  L++  E +   +     I +     +    + ++  +       + 
Sbjct: 213 FLDFDQLLTETRDLLLKMPEVQEKYRDRFKFIFVDEFQDTDELQSEIIRLLREESKNRVF 272

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               D       +        N T  +   +     +L               +L     
Sbjct: 273 F-VGDSKQSIYRFRGADVSVFNKTMKSFQNNGGELRNLRINRRSHPDLVTFQNKLFGKIM 331

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
           +    +      +     S     DI  +++  I+   SD +   A + R     I   L
Sbjct: 332 KRDFENEFFRSIYDEDIESLPYQRDIESSRVRIIRTESSDDSREVARSVR---ALIEEEL 388

Query: 379 R--------MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
                              A++    +     +  L +  I                S L
Sbjct: 389 VFKTKTGEYEKRRIVPGDIAILLRTFSKISSYENALEKLNIPFYTVGSRNFYEQPEVSGL 448

Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            S L+ +    D   + + +  P       E    R+K                  DL+ 
Sbjct: 449 LSWLDLLVDPLDNNNLVSFLLSPAFGASLDEVLTLRSKR-----------------DLRR 491

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
           L L                             L++        L+            LS 
Sbjct: 492 LPLYFA--------------------------LMESKEDRFAHLIDLLKKFGKLKYILSP 525

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI-- 608
           S+  +  V         E   LP L   + G+ + +   K++E    +        ++  
Sbjct: 526 SEILEKFVQ--------ETDYLPKLATLKSGERMIANVKKLLELAKDLDRMGSSLRELSS 577

Query: 609 ----ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
                    D      + E+S ++ IL   +S+ L F  +I+ G        +  +  F 
Sbjct: 578 NIKAFIDSSDESEAALETEESDSVKILTVHKSKGLEFPIVIV-GDTFWKKKNSDRRLFFH 636

Query: 665 SRVMQSDLNLKTAEKYI--------------GQAAHDFEMANGTRHLIYTRSLRENNIPT 710
                   +    E+ +               +    +   +  R +I       N    
Sbjct: 637 DGGFLISKSKPDREEGLIGSLASLEEEKEFEEEKRTLYVALSRAREMIII---SLNGRSD 693

Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
            +  W + +         D ++   +  +     +D  + Q      +P  P        
Sbjct: 694 SSRPWSKMICSSLLQSESDKVEASFEGIVKHFYPIDLPSIQETVYIEEPLLPEVTSVLPL 753

Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDP---DRTDRGTLFHNIITELIKKRINKN 827
           + S   + ++ P ++ A    +L    +        +    G L H ++  +       +
Sbjct: 754 TDSSYIKYLS-PTSITADDEFELQSESYAGSPGLVKNAAGIGLLAHYLLEPVGVISKRGS 812

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIP 886
                  ++ I++          + +        K+  + + H   K     E++F    
Sbjct: 813 ----VTTLESILNGGRPVSVDRINFNEYDLSEVKKVLSTLVAHPLIKEIEGAERVFSE-- 866

Query: 887 AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
                      L G  D++  LK G   I D+K       +        Q++L    LK 
Sbjct: 867 FHFQHGFGKYVLMGIVDKL-YLKDGKWRIVDFK--FASLNKRFINKYRFQMNLYLYILK- 922

Query: 947 GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
                 D         + L+       +  D   +  + L
Sbjct: 923 ------DLLSPIEATLLFLRDGKTEKIMLEDSDSFEKELL 956


>gi|15963787|ref|NP_384140.1| putative ATP-dependent nuclease/helicase protein [Sinorhizobium
            meliloti 1021]
 gi|307310975|ref|ZP_07590620.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
            BL225C]
 gi|15072962|emb|CAC41421.1| ATP-dependent nuclease / helicase [Sinorhizobium meliloti 1021]
 gi|306899655|gb|EFN30282.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
            BL225C]
          Length = 1189

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 110/919 (11%), Positives = 241/919 (26%), Gaps = 84/919 (9%)

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            G  +++     L L       +++  R +          +KL ++  +   +        
Sbjct: 262  GPALDDYIDLGLRLGGAKPSAIADGLRAVRAIDDAATRYSKLVELFFNGGGKPKAESAFL 321

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF-LKIASKYWTERLV 200
             A     A  L   ++   +      D  ++          L     L    +   +   
Sbjct: 322  NAAMRRAAPQLELRVEEARSHMLACVDRLSIVQMYGATRAALVLAERLNRDYEALKKARS 381

Query: 201  ELNASSPVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN---- 251
            +L+    +    AL+      A   + +      I++  +  + PA   ++ ++A     
Sbjct: 382  QLDFEDLIHRTAALLARSDVGAWVHYKLDQGIDHILVDEAQDTSPAQWTIIQSLAADFFA 441

Query: 252  ----HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH----------PQYSLA 297
                  +   +    D       +     +  +  S+ T                Q S  
Sbjct: 442  GETARADDRTIFAVGDEKQSIYSFQGARPERFSRESTLTERRVRAGNKHFSPIRLQLSFR 501

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
              +D L          GN          ++  S        +   D++  +    ++ ++
Sbjct: 502  STVDVLSAVDTVFANPGNARGLSARSEAIVHASNRIGQPGAVDLWDVIAPEPAASEEDWT 561

Query: 358  DVALIEADNEREEAISIAIALRMSLDEN-----------------KKKSALITADRNLAR 400
              A  +A  ER     +A  +   L++                       L+        
Sbjct: 562  --APFDATPERAPVNILARRIAAVLEDWIGRETVIEKGVRRAMRPGDVIVLVRKRDAFVN 619

Query: 401  RVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
             +   L  R  I +  +  + L++ +    L +L   +    D +++A L+K PL   G 
Sbjct: 620  ALTRALKRRGNIPVAGADRLVLTSHIAVQDLIALGRFVLLPEDDLSLAALLKSPLLDLGE 679

Query: 460  PEKYLSRAKNALELVALRGNKN----SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             + +   A+        R  +                L R +          + +R+   
Sbjct: 680  EDVFELAARRTEGESLWRRLRQAGAEETSRYHEAVRTLSRYSGLARELLPHDFYARVLGA 739

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNS-----TCGNLSISDWTKLTVTCLQNVCLDEHR 570
            D      L     +    L  + T           G  +     ++    ++    D+ R
Sbjct: 740  DGGRRAFLARLGSEVSDILDEFLTFALDHERNGLPGLQAFISTLEIEAPTVKRE-QDKER 798

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
                +      K L +    +++ G                 ++   V            
Sbjct: 799  DEVRVMTVHAAKGLEAPVVFLVDGGGEAFVRQQVSDLRF---LEKAQVDHSTLTVPVWRA 855

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
             G+  + L+  D   L  L E  + +        +         +   +      H    
Sbjct: 856  PGSAPNSLIAADNERLKKLAEEEYRRLLYVGMTRAADRLIVCGYRGQRQNTDTW-HSMVQ 914

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
                + L    + R     +   + +         D   +  +  +              
Sbjct: 915  GTLAQDLKGRGTPRLFRAGSEEWQGIAWREAHVPRDLPTSEGRSEESQRPTAGLPTALFT 974

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
             P   R  P P         + S     I+DP A       +                  
Sbjct: 975  PPAAPRRLPRP--------LAPSGTTIAIDDPDA-------EAIVGSALFAGKSAPKFSM 1019

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
            L   I+  L++   + + PE     ++ +          P      R          L+H
Sbjct: 1020 LRGAILHRLLQVLPSVDGPERLAAAERYLARSV------PRWPEAERRALAGTVMDVLDH 1073

Query: 871  EEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKK 926
             +      E     +     + +      ++G  DR+ +     V I DYKT        
Sbjct: 1074 ADLQPLFGEHSRAEVSVMGTLKLGVREFAVSGRIDRLAVTGD-MVTIADYKTNREIPETP 1132

Query: 927  ETAQKLIDPQLSLEAAALK 945
            E    +   QL++    LK
Sbjct: 1133 EEIAPVYRNQLAIYRELLK 1151


>gi|90421911|ref|YP_530281.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
 gi|90103925|gb|ABD85962.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
            palustris BisB18]
          Length = 1164

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 107/908 (11%), Positives = 229/908 (25%), Gaps = 81/908 (8%)

Query: 68   TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELAR--LILIWRNKLPD 125
             G ++  L    +L    +      + L+ +  P  +   + +  AR  L+   + +   
Sbjct: 270  DGDQAERLRQAATLTGNDQIARYLQIFLTKDFTPRKTLATKKITDARPDLVAAMKRECER 329

Query: 126  IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
            I   L     L+L       + +A ++A           + +D   L  +          
Sbjct: 330  IGPLLERRRALALRERTQALLVIASDVAADYAR------QKQDRGLLDYDDLID---KTL 380

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA--TA 243
            D L   S  W    ++                             +IA  T  + A    
Sbjct: 381  DMLNRISSGWVHYKLDRGVDH--VLIDEAQDTSPRQWDIVDH---LIAEFTAGVGARDVK 435

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            R +  V +         G          + +  +  N        S +  +     +   
Sbjct: 436  RTIFAVGDEKQSIFSFQGASPREFALRRSALQTRFRNAELKFDPISFNYSFRSGAAILQS 495

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                   + +    +      +  S +   P   D+      + +           AL E
Sbjct: 496  VDHVFRDQAIYRSIHADTTYPIHESLADAGPSLIDLWELQQPDERQDLEGWRAPFDALPE 555

Query: 364  ADNEREEAISIAIALRMS--------------LDENKKKSALITADRNLARRVKLELTRF 409
               E + +  +   +                          L+         +   L R 
Sbjct: 556  TSPEVKLSQRVQAEIAELIGNGTLTGPKGDRRALRYGDVLILVRRRGKAFDAIIQALKRG 615

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            GI +  +  + L+  +    L +L +A+    D +A+A  +K PL      + +    + 
Sbjct: 616  GIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFKLAWQR 675

Query: 470  -ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                  AL  +       +     L     +        + + L   D   A +L     
Sbjct: 676  KGSLRDALAAHAAEDGKFNTAHRRLQDCEKRARADTPFAFYAWLLGGDGGRARILRRLGH 735

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
            +    L  +             S                   +    W       +    
Sbjct: 736  EATDALDEFLELALGYERKAPAS------------------LQGFMAWLRAADTEVKRDM 777

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                +    +  +  + ++     +   T  P   +   L  L    + L      +  G
Sbjct: 778  EISRDEVRVMTVHGAKGLEAPVVFLVDTTSSPADTQRLNLVHLPQGNAALSGPSVAVWAG 837

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
                      A +P +    ++ +  +T ++Y         M      LI       N  
Sbjct: 838  --------KKADDPPVVANARAAMIAETEDEYRRL--LYVAMTRAADRLIVGGCQPGNRA 887

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQ--------CYLDWTRKLDYTTKQPHYKRPKPF 760
                  W   +                            D   + D     P    P P 
Sbjct: 888  EVRPLSWYDLICKGLEGSGLAMQTVPPPDGVVKRYCRQEDLVPEQDQAAAPPRVAAPAPQ 947

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
            P      +  + + + + +  P      R  + +     +       RG L H ++  L 
Sbjct: 948  PLPAWLNQPAAPTPLAERVLRPSDDADSRRSRAEDSSAPRAQ--ARQRGQLVHRLLQSLP 1005

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
            +    +        + +        E     + +    L              +     +
Sbjct: 1006 ELPRERRAAAAARYLARNAKDPVWTEPDRAALAVSVLALIDD------PRLAALFGPGSR 1059

Query: 881  IFVNIPAKMA-IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQL 937
              V I  ++  +    + ++G  DR+ +  S  V + D+KT   P +           QL
Sbjct: 1060 AEVPIAGRLTRLGGDTVLVSGQIDRLLVTPS-EVLLVDFKTNQAPPRALAEIPSGYLRQL 1118

Query: 938  SLEAAALK 945
            +L  A L 
Sbjct: 1119 ALYRAVLA 1126


>gi|329946359|ref|ZP_08293926.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527335|gb|EGF54333.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 1207

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 117/1117 (10%), Positives = 272/1117 (24%), Gaps = 216/1117 (19%)

Query: 46   SVTIYVPTKRAIQELR---SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
               +  PT+     LR   +  +        +   +++   +     T  L       P 
Sbjct: 64   DALLLAPTRARADWLRGRAALLLREGYGDGVV--RVRTPAALALTILTTSLTKRPAPLP- 120

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                      A ++L    +   +   +   S   LP     +      L +++      
Sbjct: 121  ----------APVLLAGAEEDSVLASMISVISWPGLPAETTGSRAFRSELRNLLARAGEL 170

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT---ERLVELNASSPVGYQIALMRAEA 219
                ++L  L        W  AA+ L+          +R  +         Q   + A  
Sbjct: 171  GITADELADLGRRLNVPIWGPAAELLRTWDAQGRPSADRRAQTRKMDTARLQDRAVEALR 230

Query: 220  EHLMK------GTKGPIIIAGSTGSIPATARLMSTVAN---HPNGAIVLPGLDCHIPTAI 270
                            +I+        ATARL++ +A      + A +    D  +    
Sbjct: 231  SWDSDAVTDPPPVPDLVIVDDYQDCTAATARLLTALATPDPDGHRAQIAVLGDPDVAVET 290

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
            +   T         ++          A  L      R + +    V+++     +  + S
Sbjct: 291  FRGGTPSLLVAAEDHSGLG-------ASRLQLTTCYRGNPETASVVADQSARVPVTGTAS 343

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---K 387
                  +  R++  L  +          V  I A +  +E   +A ALR+          
Sbjct: 344  HRQTALAPPRSSSRLSEEPEREGTAPVGVEAILASSVWQERAHVARALRLEHVHRGTAWS 403

Query: 388  KSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHSSILTSLLNAIFKLN----- 441
            + A+I      A  +  +L R G+ +   +  + L     S+ L  ++ A          
Sbjct: 404  QMAVIVRSSADAESLARDLRRRGVPLASRTPAVLLRAEPASAALLDIVRAAVSDQLGGGG 463

Query: 442  ---DFMAIATLVKHPLAKFGFPEKYLSRAKNALELV------------------------ 474
                  A   L+  PL      +    R +   ++                         
Sbjct: 464  ELPQREASVNLLTSPLVGLTTMDLRRLRRRLRQDMDTAGKGDGRAESAESSVSSESAGSA 523

Query: 475  -----ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                 A R    +     L SLV D          +      +       A  +++ +  
Sbjct: 524  TATEAATRPGARTGADTVLLSLVADAGQAAAFARSLDGESLGVQASQLLTAARIIEALRT 583

Query: 530  CI-----TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
             +           +    +       ++  +       +  +            +   TL
Sbjct: 584  RLHGTPDDAPRDVEALLWAAWAASGRAEAWRSVALRSSSSSVRSLLSEAAEHDLDVVTTL 643

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
                    E      A+     ++   ++  ++V P+  +   + ++         ++ +
Sbjct: 644  FKRAEVWAERHPGQDAS-SFLAELDAEVLPSDSVAPRGRRPEGVAVMTPARCAGQEWELV 702

Query: 645  ILGGLNEGVWPKNTAKNPF----------------------LSRVMQSDLNLKTAEKYIG 682
            ++ GL    WP    ++                         +      +    A+    
Sbjct: 703  VVTGLERDRWPDLRLRDSLTRTGLLVDAVTDRLPAGANGPEAASEGSGAIAAARAQVRAD 762

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG------------------ 724
            +        +     +   +  +       S +L  +    G                  
Sbjct: 763  ERRMLIMALSRATRRLLLTATAD--AEHAPSPFLTEIAQAIGIHLTDSDGAPILAPDTGD 820

Query: 725  -------------------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------- 758
                                      ++RG+  ++    L                    
Sbjct: 821  LILRGLVGELRHAAVAGNLETATPTERQRGRAAVELLADLARQDVPGADPAAWIGATGPT 880

Query: 759  --PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                   + +    S S+++ L   P   +  R              D    G+L H I 
Sbjct: 881  STTPLVAKGERIRVSPSDVEGLAACPLKWFLNRNGGSAP------ASDAQALGSLIHEIA 934

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH-IDIIWRHLFHKISHSFLEHEEKIQ 875
                 + +          ++   +        P   +  +       +      +  +  
Sbjct: 935  ERAESEHLRG------AALRAAFEERLGDLGYPDTWLGGLAAERARAMIERLDAYLTECD 988

Query: 876  SSIEKIFVNIPAKMAIESI------------------------GIHLTGFADRIDLLKSG 911
            +   +  V  P +  ++                           + ++G  DR++ L   
Sbjct: 989  ALGVRADVEHPVRADVDIPLQVLSPEVRGRVGVRMSVGGLDAVPVRISGRIDRLEHLGDH 1048

Query: 912  ---------------FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
                              + D KTG     +  Q+   PQL+    AL +          
Sbjct: 1049 AGQDLDDPAAPAGNSSARVIDLKTGQR-VPKDVQRH--PQLATYRLALASQGRDVTGGAL 1105

Query: 957  V---------ANLFYIRLKQKFKIDCITNDKKKYSAD 984
            V         +   Y+ +     +D     ++     
Sbjct: 1106 VLLGKEPSKRSGDGYVLVPPGAALDPSPASQEPADRP 1142


>gi|218550070|ref|YP_002383861.1| exonuclease V subunit gamma [Escherichia fergusonii ATCC 35469]
 gi|218357611|emb|CAQ90250.1| exonuclease V (RecBCD complex), gamma chain [Escherichia fergusonii
           ATCC 35469]
          Length = 1122

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 108/973 (11%), Positives = 243/973 (24%), Gaps = 121/973 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMALSQKFGIAANIE---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         +      +L  L+  W ++    +        L+  
Sbjct: 63  PLPASFIWDMFVRVLPEIPKESAFNKQSMTWKLMTLLPQWLDREDFTLL----RHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D       +W     A K         +    L  A   +T  
Sbjct: 119 SDKRKLFQLSARAADLFDQYLVYRPEWLSQWEAGKLVDGLSEAQVWQAPLWKALVEYTAE 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             +                + I G +   P   + +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         K                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRKGVDAEKLFNSEGEQDVGN 297

Query: 299 -LLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342
            LL        D   L +  +        +                +             
Sbjct: 298 PLLASWGKLGRDYIYLLSDLDNSQELDAFVDITPDNLLHNIQSDILELENRAVAGVNIEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +K   +    + V      + + E   +   L   L+E+     +   ++ AD + 
Sbjct: 358 FSRSDKKRLLDPQDNSVTFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         +   IS      +        +LL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFITLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +    F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L  
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDAETEAA--MTLIEQQWQAVIAQGLGAQYNEAVPLSLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A   F   +M          +    
Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPRRGDRSRRDDD 712

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF------------ 728
                E     +  L  +   R   +N     S  +Q L+   G   +            
Sbjct: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772

Query: 729 ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPRTY 770
                         +    Q YL   ++       P   +          P     P T 
Sbjct: 773 EAKVKAHITCMHTRMPFDPQNYLPGEQQSYAREWLPAASQSGEAHSDFVQPLPFEMPSTL 832

Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827
               +++    P   + +  L+++F     + PD       G   + I  +L+   + + 
Sbjct: 833 LLESLQRFWAHPVRAFFQMRLRVNFRAQESEIPDTEPFTLEGLTRYQINQQLLNTLVEQ- 891

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
             +   L ++        E        I      +      +     +            
Sbjct: 892 -EDAERLFRRF---RAAGELPYGAFGEILWETQCQEMQQLADRVIACRLPG------QSM 941

Query: 888 KMAIESIGIHLTG 900
           ++ +   G+ LTG
Sbjct: 942 EVDLNCNGVQLTG 954


>gi|220919101|ref|YP_002494405.1| hypothetical protein A2cp1_4020 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956955|gb|ACL67339.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1079

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 143/1050 (13%), Positives = 283/1050 (26%), Gaps = 161/1050 (15%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             L S T  VP++R    LR E       ++ +L   + LG       TA + +       
Sbjct: 24   PLPSRTALVPSERHAHALRRELA--WTGRAGVLAGTRFLG-----PLTAAIEVLQAAGVA 76

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
             +  +  L  ARL+ +++  LP    DL                   +  A  I  +E  
Sbjct: 77   FTPGEGALRPARLLALFQEDLPLEHFDL---------ELLRTTRGWDEAFASAIGDLEAA 127

Query: 163  EKKWEDLHA--LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 DL A           W  A                E  A +          A A 
Sbjct: 128  GLGPRDLPAEPAAARDLARLWSRA----------------EAGAGTSFSSARIFHEAAAL 171

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    P                            +  G +  +       I +    
Sbjct: 172  LARDPCAWPF---------------------LGPTLALATGHEDAVHAGFLRAIPDVRLA 210

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
            + ++      H +  +A+L           +               +  ++L  D + + 
Sbjct: 211  VQTARPIGERHLE-RVARLFGTDVRSALAARGPTGSPRAEKSTERDLLATYLLTDAAVLA 269

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLAR 400
            +     +  P+      + A +EA+ E   A+ +A  +  +    ++ + L+ A   LA 
Sbjct: 270  DPARPRSGGPDGTVDLEEHAGVEAELEAT-ALWVARQVLEARRPLEEIAILVPAQDPLAG 328

Query: 401  RVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
             V   L R         + ++ G+P  +T   + + ++L A+        +A ++   L 
Sbjct: 329  LVADRLARLPFDGGPLPVFVAGGLPAISTAAGARILAVLRALRSHLSAETLAPVL-PALR 387

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
              G      +   +   +    G           +  L                      
Sbjct: 388  LDGIAGGDRTHLTHGEAMELAFGLGIVGGNPAHPAGALAWSERAAARAGELAAALAQVHA 447

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            D + A      + + +  L   +   ++  G                 +     R L   
Sbjct: 448  DDDSAERERWRLERTLKSLRAIRPALDALVGVARKIVDGAPLAAVADVLGGFLARWLLAP 507

Query: 576  WFEEEGKTLSSLFSKIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                      +        G+     +  + + +I   + G  V         +++    
Sbjct: 508  GEGAALPARLAEALAPACAGTLGKALSGDDALQVIEDQLLGLRVAHGRFGEPAVYVGTVA 567

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL-------KTAEKYIGQAAHD 687
             +  L F  + + GL EGV P    ++P +   ++  L           AE  +    H 
Sbjct: 568  GAAGLGFGAVRIVGLCEGVLPSQPREDPVVPGALREQLERGAPGRVVPRAEDRVAAQVHA 627

Query: 688  FEMA---------NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
               A              +   R+ RE     I +         G  +  + +       
Sbjct: 628  LVAAVQGARDAVALSAPRVDLARTEREPGAIFIDAAAALARPHAGTGEPAEAVPDGAALR 687

Query: 739  LDW-------------------TRKLDYTTKQPHYKRPK--------------------- 758
             D                       LD   +      P+                     
Sbjct: 688  RDAFRPAASAAARFRDAHPISDASWLDRVARTAAALPPEWTGAPVVDLARLAALRTPTGP 747

Query: 759  --------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI--PHFKKD 802
                          P  P  A  R  S S + QL+  P     RRIL  D        ++
Sbjct: 748  LGPSDGIFDGGGPFPPVPGIAPERPISASALGQLLQCPRLFLMRRILGWDEPAGAPSLRE 807

Query: 803  PDRTDRGTLFHNIITELIKKR------INKNTPEINHLMKQIIDSHFEKENLP-----PH 851
             D    G+L H ++    ++             +     + + D  FE            
Sbjct: 808  LDPLSFGSLLHRVVELFYREHGDAFSRREGTLGKWQLRARAVADRAFEGLLSEVPLVGEG 867

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-------KMAIESIGIHLTGFADR 904
            +    R   H     FL ++ +       + V +P         +  +   +H+ G+ DR
Sbjct: 868  VRQKERERLHDALREFLAYDWE-GGPRRFVGVELPFGTPEAPLSVDADGQTLHVHGYIDR 926

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQKL----IDPQLSLEAAALKAGSFSQIDCRKVANL 960
            +D  + G   + D K+G    +   +       D QL L   A +  + +     KV   
Sbjct: 927  VD-AEDGVTLVRDLKSGKAHPRAGKEAGPTPLRDVQLGLYQLAARKLAKAWRTPVKVQGA 985

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             Y     + +++         + ++ + + 
Sbjct: 986  -YAYASGRGEVEERAFRADAGALEQATAEW 1014


>gi|28572402|ref|NP_789182.1| ATP-dependent DNA helicase subunit [Tropheryma whipplei TW08/27]
 gi|28410533|emb|CAD66919.1| putative ATP-dependent DNA helicase subunit [Tropheryma whipplei
           TW08/27]
          Length = 973

 Score =  116 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 118/998 (11%), Positives = 262/998 (26%), Gaps = 155/998 (15%)

Query: 50  YVPTKRAIQELRSEFIEITG-----KKSTILPIIKSLG--DVVEEKFTADLLLSYNLNP- 101
              T++A  EL S   +            + P I  L         +  + LL  +  P 
Sbjct: 70  LTFTRKAAGELASRLQKSLAILNSYTGDVLSPEIDVLTYNSFANSIYQDNALLLDHPVPY 129

Query: 102 -PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI--IDI 158
             + + +  L   RL++     L +       ++  S  I   +AI    NL D+  ++ 
Sbjct: 130 TAIEDSEAQLIARRLLVEH--GLDEDEPSETIDNLASSLIKLDDAI--VDNLLDLGELNQ 185

Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
             +E  ++         K  ++       L        +        S        +   
Sbjct: 186 FASEFIEFVGAFDAPVAKSDVFRAKRLIALSKLIPALKDEKKLRGRISYSEQVAFALEVC 245

Query: 219 AE----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
            +       +     +++     + P     + T+    N   VL   D       +   
Sbjct: 246 RQTHVLAEFQEKIAYVVLDEYQDTSPIQVEFLKTIFG--NRCRVLAVGDPRQAIFGFRGA 303

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
           +  +    + +   +             L I   + K + ++                  
Sbjct: 304 SVANIANFARDFVSNKQY---------ELSISWRNDKNILDL------------------ 336

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
                  +  +    P  +      +L    +  +E    A+ L   +++    +A++T 
Sbjct: 337 ---ANHISPKIRPLHPRPEANDGSTSLEVYTDPEQEVHEGALWLNSVVEKG--TAAVLTR 391

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
            R+    V   L   G++    A + +        + S +  I  +N+ ++   L+  P 
Sbjct: 392 TRSRLISVSRVLDEIGVSYTR-ADVNIFYEPGVVDILSCMRIISGVNENLSFLRLITGPR 450

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
            + G  + +  R                   + +    LDRI+  +    +   ++ +S 
Sbjct: 451 WQVGISDLHALR-----------------GYIAVGKKNLDRISLLEAVNRINIQKTPMSC 493

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           E K+     ++   + I  L      + +     S++   ++ ++      LD   +L  
Sbjct: 494 EGKKRLEDFLEFFRK-IKGLSFLSPLELAYLIEESLNLDIEVQMSHRGRENLDALYELIA 552

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
            +  +    + + F  + E             D     I              + +    
Sbjct: 553 SFRGDNLSEMLAWFDSLEEE------------DAFRGPIKQSCP-------GQVELFTVH 593

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPF-----------------------------LS 665
            ++ L +D ++L  L++                                           
Sbjct: 594 SAKGLEWDWVLLPFLDDFPAKSREKSGWLSKTGLLPFCLRLDRESLPEFYFHKCSDSKEY 653

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
           R  +        +  I +      +A          S      P    R +   L     
Sbjct: 654 RAARRQYEDDVLQHQIREERKLLYVAVTRARQGLRISASARQKPGQFLREISEFLQTDLP 713

Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND---- 781
               N  K+   Y           +            +E    +     +K LI      
Sbjct: 714 QAVHNNPKKRVGYWPLDSLGARRKRVKLAAAAVHNRSIEESEESLKKEPLKALIAGMLKE 773

Query: 782 ----------PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
                       +  A      +     +        G  FH  I        +    E 
Sbjct: 774 LDISVDKPEKRISATALSKKDPNVFLLPQPPIKNAWLGVAFHAWIENYYSTYSDMLFHEN 833

Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
           +     I    FE+          +     ++ H+F++ E    S  + I V +  +  I
Sbjct: 834 SADEYGISGPVFEQS-------QRFSPELDQLRHNFMQSEW---SYKKPIAVELSLEWLI 883

Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
               + +    D +         I D+K+G +  +         QLSL   A     +  
Sbjct: 884 --GDVIVPCTIDAVFFDGD-RYTILDWKSGLSSNQ------YRIQLSLYRLAFAE--WKG 932

Query: 952 IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
           ++  KV    Y     +          +          
Sbjct: 933 VNPDKVEAKIYFAADNRTIKVRPYTVDELGKMPGFLSD 970


>gi|298245873|ref|ZP_06969679.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
 gi|297553354|gb|EFH87219.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
          Length = 1233

 Score =  116 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 107/894 (11%), Positives = 245/894 (27%), Gaps = 104/894 (11%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PP 102
            A +     +++A QE+     ++  ++   LP + +      +       L         
Sbjct: 303  AQILALTFSRKAAQEMEERLAQVLTRQ---LPKVSTFHAFCADLLRRYGELVGLRPGFTL 359

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +   +    L +L      +L   +K   P       +               I   + E
Sbjct: 360  LDEAEGYFLLRQL--SHSMRLKHYVKLSAPTFYFPDMLKA-------------ISRAKDE 404

Query: 163  EKKWEDLHALKNE--------KYGMWWLLAADFLKI--ASKYWTERLVELNASSPVGYQI 212
                E+   L                   A   L+I      + + L         G  +
Sbjct: 405  LITPEEYTRLAQAMFELAQGQDDTEVLERAEKALEIAQVYTLYEQALGRRGDCDFGGLLL 464

Query: 213  ALMRAEAEHLMKGTKGP-----IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
              +R   EH     +       +++        A+  L+  +A       V    D +  
Sbjct: 465  LTVRLLREHPEVLAEQQQVYQFVLVDEFQDMNRASGVLLRVLAGEAGR--VWVVGDANQA 522

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               +   +  + +  + +   +                       +  +S     R  ++
Sbjct: 523  IYGFRGASPANISQFAQDFPGAV----------------------ILPLSRNYRSRPDLV 560

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--N 385
            S +     T   +  +  +N+   + +    V L +A NE  E   I   ++    +  N
Sbjct: 561  SLAEAFRCTYLDKGQEPGKNQPVRVAETGPYVTLAQASNEASEVAGIIADIQHKRRQGYN 620

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
             K   ++   R+ A+++   L    +     AG       H   +  +L  +      M 
Sbjct: 621  YKDMMVLCRTRSQAQKITRALLEADLPTHERAGT--LEQEHVKDVLGML-LLLSNESGMG 677

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM-----DLKSLVLDRIATQK 500
            +  + + P  +    +            V+ RG   + +       + ++ +   +++ +
Sbjct: 678  LLRVARLPDYRLSQEDIEALLLSAHERRVSPRGLLLTEEFPLDISSEGRNTLQRLVSSMR 737

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                     + +S+   +   L+ D +      +             L ++      +  
Sbjct: 738  ALQQCNDTWTCMSQYLLQETSLVRDLLRHPEDEVAKGL--LLDYDRLLQLARHYDQQLEA 795

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
             + V   E   L  L  E   K      S ++                            
Sbjct: 796  RRRVLAQEAVSLEELSMEARLKGFLEYLSMLVVLRQDGAT-------------RESGEGE 842

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF-LSRVMQSDLNLKTAEK 679
              E+++ + ++    S+ L F  + + GL +  +P     +       M    N   A  
Sbjct: 843  DEEEANIIQVMTVHASKGLEFPVVYMPGLVQNRFPLTYRSSAVNAPDGMLLAKNTGRAAH 902

Query: 680  YIGQAAHDFEMANGTR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL-KKRGQC 737
              G+A   +  A   R HL+ + S R        S +L  L      +    L  +    
Sbjct: 903  DGGEACLFYVGATRARDHLVLSYSERYGKKSYKRSLFLDPLEAAMPQERLAQLAWEAHGE 962

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
              +   +          +R         +P   S S ++     P       I   D   
Sbjct: 963  IEERVEESLKPISIQPGER----FLDRMRPTDLSSSLVEVYRRCPRQYAYSTIYHFDGDA 1018

Query: 798  HFKKDPDRTDRGT--LFHNIITELIKKRINKNT--PEINHLMKQIIDSHFEKENLPPHID 853
               +   +  + T  + H  +  +            E+  L K+       ++     + 
Sbjct: 1019 DAYRLFRQATQQTVEVLHKQLASMADSSQGTLPTFEELEALYKRHWRELGGEDMPFAPMY 1078

Query: 854  IIW-RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
                  +   +    +   E   S  E         + +    + +T   DRI+
Sbjct: 1079 EAHGIEVVEGMRQKLVTQSETQWSMRE------SLHVDLAGRSVRVT--VDRIE 1124


>gi|78186858|ref|YP_374901.1| exodeoxyribonuclease V, RecC subunit [Chlorobium luteolum DSM 273]
 gi|78166760|gb|ABB23858.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Chlorobium
           luteolum DSM 273]
          Length = 1075

 Score =  116 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 106/938 (11%), Positives = 227/938 (24%), Gaps = 100/938 (10%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   L   F   P      +   + V ++   + L  E     G  +           V
Sbjct: 13  VLAADLASYFAASPPA-SPFSREVVVVQSRGMQRWLSMELARRLGVWAGA--RYPFPNAV 69

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
           V E F        +             + RL+       P  I        LS   +P  
Sbjct: 70  VSELFRHVFPSKEDEAGRYDPECTTWSIMRLLPSMLRDEPFAILS----RYLSGSSAPLR 125

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELN 203
              LA  +AD  D       +   L            W             W     EL 
Sbjct: 126 LYQLATKIADSFDQYTLFRPEMLALWEAGEGTAGPDGWQSIL---------WRRLNAELG 176

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                                     I + G +        ++S +A H    + +    
Sbjct: 177 GRHRG-ILKEAFCRNGTLPDAVFPRRIALFGISYLPQFHLDILSAIARHREVNLFVLSPT 235

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                 I +  T               +P      LL  L     D   +     +   R
Sbjct: 236 EEYWGDIVSRRTLSGMTHAERELHAEGNP------LLASLGRIGRDFSDMVLEIPDEQNR 289

Query: 324 SMVISKSFLPPDTSDMRNTDIL------ENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
           ++                +DIL      E + P        V +    + + E   +   
Sbjct: 290 TVERYIDPRRDTLLHAIQSDILTLSGTGEGERPVCSATDRSVQVHACHSPQREVEVLHDR 349

Query: 378 LRMSLDEN----KKKSALITADRNLARRVKLEL----TRFGINIDISAGIPLSTTLHSSI 429
           +   L+       +   ++  D          +        I   ++    ++    SS 
Sbjct: 350 MLDMLESIPGLAPRDIVVMAPDIETYSPFITAVFGSAAEGRIPFSVADRRLMNEGEVSSA 409

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           +  LL           +  L+  P     F    +S  ++    +     +   D  +  
Sbjct: 410 VLRLLELHRSRASAPELFDLLSSPPVARRFG-LDVSALQSIRGWIVDTRIRWGIDEEERS 468

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELA-----------VLLVDHILQCITPLVTYK 538
              L           +       + + +E                 + I      +    
Sbjct: 469 MNQLPAFRQNTWRAGIDRLLLGYAMDSRESCCEGILPFEGVDGGAAETIGLFADFIDAVD 528

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
             ++      ++ +W    ++ L++  L E        F      +  +      +    
Sbjct: 529 RFRHGLSKTRTLEEWRVFFISMLEHFMLTEEDSTR--EFLAVQDLMERMGEISRLSAYHD 586

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
           +      I  +   +  +           +     L  R + F  +++ G+++G +P+  
Sbjct: 587 EVPPEVVIAWLQGRLQQKEQGLGFMTG-GVTFCSMLPMRSVPFRVVVMLGMDDGAFPRQQ 645

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI---YTRSLRENNIPTIASRW 715
               F   ++                    E     R ++   +    R+++ P   S  
Sbjct: 646 HPPGF--DLISRHPKRADRSVRAEDRYLFLETILSARDVLYISFVGRSRKDSSPIPPSVL 703

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLD---------------------------WTRKLDYT 748
           +  L       F      R +  L                                    
Sbjct: 704 VSELFDAIDRGFLLPEGVRAEEMLLFSHPLQPFSPACFSAGGPLFSYSEENFLPHAEHSG 763

Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP---HFKKDPDR 805
                     P P      +     ++    ++P A + R  L L          +    
Sbjct: 764 AGPEPLFMDSPLPEPGEPLQRVELMDLIGFYDNPSAFFLRYRLGLQPAGQVLPLDEREPF 823

Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI--DIIWRHLFHKI 863
              G   + I  EL +  +      +   + ++ D    +  LPP +  D +++ L    
Sbjct: 824 GLDGLDAYRIRAELAEAML------LEGDIGRVQDRFRAEGVLPPALSGDRLYQSLLEDA 877

Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
           +  F+   +++      +         +    + L+G 
Sbjct: 878 A-RFVRSVQRLAPISLPLPA---LDFELPLGPMILSGR 911


>gi|292492977|ref|YP_003528416.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4]
 gi|291581572|gb|ADE16029.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4]
          Length = 1159

 Score =  116 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 94/809 (11%), Positives = 187/809 (23%), Gaps = 104/809 (12%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--------GPIIIA 233
                  L +A         E             + A  E                 +++ 
Sbjct: 366  EALFQLLPLAVAQLQLVFQERGEVDFTEVAQRAVVALGEAEAPTDLALTLDYQIRHLLMD 425

Query: 234  GSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
                +  +   L+  +       +G  +L   D       +                   
Sbjct: 426  EFQDTSLSQYILLERLTTGWEPGDGRTLLVVGDPMQSIYRFREAEVGLYLQAWR------ 479

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
              Q      L  L +        G V    +    ++  +      +   +     +  P
Sbjct: 480  --QGVGQLPLVPLTLSVNFRSHQGVVDWVNHAFRQILPATEEIATGAVPYSASHAFH--P 535

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRM-SLDENKKKSALITADRNLARRVKLELTRF 409
               +    V      +  EEA  +   +            A++   R     +   L   
Sbjct: 536  PRAEQAVQVHPFFGKDLAEEAEVVVRLVEKIKQAALNSTIAILVRSRGHLAEIVPLLREA 595

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            G+        PL +      L +L  A+F L D ++  T+++ P       + Y+   ++
Sbjct: 596  GLRFRALEIEPLGSRPVVQDLLALTKALFHLGDRLSWLTILRAPWCGLTLADLYILAGED 655

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                                                         +D++    L     Q
Sbjct: 656  Q------------------------------------QAAIWDRIQDEDCIQRLSGEGRQ 679

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             +  +        +    +S   W +        + L     +P     EE      L  
Sbjct: 680  RLARVRRVLAKAFAGRRRVSPRRWVEGA-----WLALGGPACVPESTALEEASVYLDLLE 734

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            +       +          +   +      P      TL I+    ++ L FDT+I+ GL
Sbjct: 735  QEAVADEILDF------RALDEGVGRLFAPPDKLADETLQIMTIHRAKGLEFDTVIVPGL 788

Query: 650  NEGVWPKNTAKNPFLSRVM--------QSDLNLKTAEKYIGQAA-HDFEMANGTRHLIYT 700
                  ++     +  R             L    AE      A + +          + 
Sbjct: 789  GRSPRYESHQLLLWAERPASDSPSGNDNQLLLAPIAETGQQPDAIYHYIKGLHEEKASFE 848

Query: 701  RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
                     T A   L  L  +             +  L           +      +  
Sbjct: 849  NGRLLYVAVTRAKHQLHLLGQVVLDKTDQPKAPPKRSLLASLWPAVKEEFEVAAPSRRET 908

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYA---------------RRILKLDFIPHFKKDPDR 805
               E +  + SFSE                                 LD I         
Sbjct: 909  CTQEEREDSLSFSEGGLFSRLSIQWQCPEPMPGVKTDIGGLPEAASALDPIEFDWAGETA 968

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
               GT+ H  +  + ++ +    P     +   +      + +  +          ++  
Sbjct: 969  RYMGTVVHRYLQLIAQEGLEHWNPARITGLGPALRRALMGQGVAANELENALERTQEVLK 1028

Query: 866  SFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
              LE         S   +     P    +      +    DR  + + G   I DYKTG 
Sbjct: 1029 QTLEDPRGRWILSSDHRQALNEYPLSGILNGR--IIRAVIDRTFVDQEGVRWIVDYKTGS 1086

Query: 923  NPKK------ETAQKLIDPQLSLEAAALK 945
            +         +  Q+    QL    A + 
Sbjct: 1087 HEGSDREAFLDREQERYRLQLESYGALVA 1115


>gi|254488041|ref|ZP_05101246.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101]
 gi|214044910|gb|EEB85548.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101]
          Length = 1125

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 84/818 (10%), Positives = 215/818 (26%), Gaps = 130/818 (15%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHLMKGTKGPIIIAGSTG 237
             F     K +     +          +          + A   + + G    I++  +  
Sbjct: 337  QFADAFLKRYALEKQKRGWLDFDDLILKARNLLTNPAVAAWVLYRIDGGIDHILVDEAQD 396

Query: 238  SIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            + P    ++  +A            +   +    D       +     +  +   +    
Sbjct: 397  TSPRQWDVIERLADEFYSGDGAREDDARTLFVVGDKKQSIYSFQGADPREFDHKQALFEQ 456

Query: 289  S--THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                  Q    + LD+       + +L + S   +  +   + +      S +     L 
Sbjct: 457  KILEAGQIFQRRSLDYSFRSSSAILQLVDTSFAPHASAGFQADTTHKAFKSALPGRVDLW 516

Query: 347  NKIPNIQKCFSD------VALIEADNEREEAISIAIALRMSLD----------------- 383
              +                   E  +    A  IA  ++  ++                 
Sbjct: 517  PLVAKSDDADDREWSDPVDQKSEHHHTVILADQIARQIKTLVEGDHYIPVDGDSAGVFER 576

Query: 384  ---ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                      L+    +L   +       G+ I  +  + +   L    L +LL+ +   
Sbjct: 577  RRIRAGDFLILVQRRSDLFSEIIRACKTAGLPIAGADRLKVGAELAVKDLAALLSFLATP 636

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             D +++AT +K PL  +     +      + + +      ++         +L  +  Q 
Sbjct: 637  EDSLSLATALKSPLFGWTEQMLFTLSHYRSEDHLWQALRSSTE--HPETVSILKDLRAQV 694

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
            +         R+    K     L     +    +        S                 
Sbjct: 695  DYLRPYDLIERILTRHKGRRNFLARLGPEAEDGINAMLAQALSYER-------------- 740

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                          +W + +   +        +    +  +  + ++    ++     +P
Sbjct: 741  ----GAIPSLTGFLVWMQTDDLEIKRQIDNASDQIRVMTVHGAKGLEAPIVILPDTGKRP 796

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
             + +   + +  T   +L + D                     +   M++ L+ +   + 
Sbjct: 797  LVIRDEIIKVDDTPVWKLSDAD---------------------MPSAMRAALDERKEREM 835

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN------LKKR 734
              +    +         +   +    ++P   S W Q +    G    +       L+ +
Sbjct: 836  NERLRLLYVAMTRAEKWLIVAAA--GDLPKDESSWYQMIGAAMGQAGAEPVGQTGVLRFQ 893

Query: 735  GQCYLDWT----RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
               +         ++ + T        +P P +  + +T S S++               
Sbjct: 894  HGDWDGLPIRAKAQIPHVTPVLEPIFDQPVPAIPVREKTTSPSDLG-------------G 940

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
             K         + D    G+L H ++  L   + ++    +   +    D+   +  L  
Sbjct: 941  AKALAGEDGLAEEDAKSYGSLVHQMLETLPLMQSDRW-DTVLKTLSDGYDAGVARAALDE 999

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
             + ++       I  +                  +P    I      + G  DR+ + +S
Sbjct: 1000 AVALMQNADIRHIFDA-------------DALAEVPITATIADK--RIHGTIDRLLVTES 1044

Query: 911  GFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
              V   DYKT        E   + +  Q+   AAAL+ 
Sbjct: 1045 -SVLAIDYKTNRVVPHTTEACPEGLLRQMGAYAAALRQ 1081


>gi|239990572|ref|ZP_04711236.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 670

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 77/646 (11%), Positives = 147/646 (22%), Gaps = 65/646 (10%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TLVE+           A + +   +++A  ELR       G  +   P   +        
Sbjct: 41  TLVESVAARVNRGGDPARILVLTFSRKAAVELRDRMAARLG--AARGPQATTFHSYCYAL 98

Query: 89  FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
             A        +    +S  ++ + +  L+    +   +    L          +     
Sbjct: 99  VRAHQDADLFADPLRLLSGPEQDVTVRELLAGQLDLEKE---GLAQVRWPDELRACLTTR 155

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             A  +  ++          + L           W  AA FL         + V   A  
Sbjct: 156 GFADEVRAVLARSRELGLGPDALADFARRTGRPDWTAAAQFLAEYLDILDAQGVLDYAEL 215

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                +   R E    + G    + +     + PA  RL+  +A +   A          
Sbjct: 216 VHRAVLLAERPEVAAELAGRYDAVYVDEYQDTDPAQVRLLHALAGNQGRAPEYAQPTEKA 275

Query: 267 PTAIWNTITEKSTNITSS-----NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
             A                          +            D     V  L        
Sbjct: 276 RGAGARAGRTLIAFGDPDQSIYTFRGADVNGILDFPDTFRRADGSPAPVGVLTTSRRSGA 335

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
           G              + +    +  ++  +  +    V          E  +IA  LR +
Sbjct: 336 GLLAATRLLTRRMPLTRLPADTVRAHRELHAVRDGGRVETYTYPTASTELDNIADLLRRA 395

Query: 382 LDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNA 436
             E+     + + L+ A       V+  LT  G+ +++     PL      + L + L A
Sbjct: 396 HLEDGVPWQEMAVLVRAGGRSLPAVRRALTSAGVPLEVDGDDLPLRHEPAVAPLLTALRA 455

Query: 437 IF------------------------------------KLNDFMAIATLVKHPLAKFGFP 460
           +                                        D     TL+  PL      
Sbjct: 456 VATAALQCLPDLPDLPDLPDRSGLPDLPEGDPGEAGAPSWLDTETALTLLTSPLG--SMD 513

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
              L R   AL               D                  P             A
Sbjct: 514 AADLRRLGRALRDEERAAGIRIPAPSD---------ELLARALAEPERLVTHDPAYAHGA 564

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
             L   + +    L    T + +     + + W                    +L     
Sbjct: 565 QRLGALLRKARELLQGGGTAEEALWTLWNGTPWPGRLERAALRGGAGGRNADRDLDAVCA 624

Query: 581 GKTLSSLFSKIIETGSCI-KANAIEWIDIITRLIDGETVKPKIEKS 625
               ++   +       +     ++  DI    +   T +P   + 
Sbjct: 625 LFDTAARAEERTGGRGALNFLEEVDAQDIAADTLSRRTARPDAVRL 670


>gi|81299966|ref|YP_400174.1| hypothetical protein Synpcc7942_1157 [Synechococcus elongatus PCC
            7942]
 gi|23957809|gb|AAN40822.1| unknown [Synechococcus elongatus PCC 7942]
 gi|81168847|gb|ABB57187.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 1061

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 95/821 (11%), Positives = 204/821 (24%), Gaps = 122/821 (14%)

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            + D +  EE          ++          +  +   K    R  +         +   
Sbjct: 274  LRDRLRDEESLLSLRPNEADDWNRDQRSRIYEAFETVLKSIDARKRQDRCLDFNDLERGA 333

Query: 215  MRAEAEHLMK----GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
            +RA     ++           +     + P  ++++  + + P   I+    D       
Sbjct: 334  VRALESEAVRSHYQQRWRYCFVDEFQDTNPTQSQILQALWD-PQHLILTLVGDEKQSIYG 392

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
            +     +                 +L++         E + ++     + Y       + 
Sbjct: 393  FRGAATQVFRNWQQQIQQHQGHIVTLSQSFRTHQTLLETINQVFEPVLDPYQPLRSDRQP 452

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------ 384
              P         +  E                      +EA +IA  ++  + +      
Sbjct: 453  PHPLPPIQQLVIEPEEKDSLEQA-------------RIQEATAIAQQIQTWIQQPLLVWD 499

Query: 385  ----------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                          + L      L       L + GI + ++ G  L  T     L +LL
Sbjct: 500  KPSNQHRPIAYGDIAILCRRRAPLETVYGEVLNQAGIPVLVNGGGSLLETPVGYDLQALL 559

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
              +   ++ +A+ATL++ P       + Y    +           +         + +  
Sbjct: 560  EFLVYPSNDLALATLLRSPAFGLSDAQLYQRAQQGKGWWSH----RQERPDPAFAAAIKI 615

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                 ++       +     +       ++  + Q    L+       +       +   
Sbjct: 616  LEGLLRSRFLESPLRLVQQFDRATGYSAVLASLPQA-QRLLADWQALLTFLREQPQAHDL 674

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            +L +   + +             ++    L     +     + +  +  + ++    +I 
Sbjct: 675  ELLLRYWKQL-------------QQAEVVLPRPVLEAGNAVTLMTLHGSKGLEWPVVIIP 721

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              T KP+ +  + L            FDT +   L +    +  A   F     Q   + 
Sbjct: 722  DLTAKPRSQAETVL------------FDTELGVALRQPYVKEQAAAYQFFKYRKQQAEDA 769

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            +T           +      R L+   S         A   L  L           L   
Sbjct: 770  ETR-------RLLYVGFTRARDLLLLTS----PKSAEARSPLDLLAPGLEQAAIQPLDPN 818

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                +  T  L        ++      P        S S        P   + R      
Sbjct: 819  SGTEIAVTATLPTADAPLFWQSTAAIAPQ---YSELSVSAFADYFRCPALFHFRYTQGHP 875

Query: 795  FI---PHFKKDPDRTDRGTLFHNIIT------ELIKKRINKNTPEINHLMKQIIDSHFEK 845
                             G L H  +       E +K        ++     Q+  S F  
Sbjct: 876  GAIDGEGAGTSDRPLQLGLLVHRALELDLRQPEALKPYCAAEDQDLIPQALQLA-SCFAT 934

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
            E +   +    +                           +   + + S G+ L G AD +
Sbjct: 935  EPVYSAVREQAQQR------------------------EVTLHLEL-SSGLVLKGRADLV 969

Query: 906  DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
                 G   + D+KT   P+ E        QL   AAAL  
Sbjct: 970  -----GADWVLDFKTDQQPQPEN----YQLQLWAYAAALNR 1001


>gi|327192794|gb|EGE59722.1| putative ATP-dependent exonuclease V protein [Rhizobium etli
            CNPAF512]
          Length = 1183

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 94/813 (11%), Positives = 214/813 (26%), Gaps = 78/813 (9%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIAG 234
             A       +  + E   + +                +  +              I++  
Sbjct: 361  AALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGIDHILVDE 420

Query: 235  STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
            +  + P    ++ ++A          P    +    D       +     +  +  S  T
Sbjct: 421  AQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSFQGARPERFSEESDRT 480

Query: 287  TYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL--PP 334
                              S     D L+   E  +   N          V+ +S     P
Sbjct: 481  RRRVSDSGQSFSSVRLPLSFRSTADVLEAVDEIFRTSDNARGLSAVGEPVVHRSSRIGHP 540

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------------RMS 381
               D+ +    E  +          A  E+      A  IA ++             +  
Sbjct: 541  GAVDLWDMVAPEAVVKEEDWTAPFDATPESAPAAILARRIAHSIGALVGRETIVDKGKER 600

Query: 382  LDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
            L E      L+         +   L  R  I +  +  + L++ +    L +L   +   
Sbjct: 601  LIEAGDILVLVRKRDAFVNALTRALKRRGDIPVAGADRLVLTSHIAVQDLLALGRFLLLP 660

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             D +++A ++K PL      + +   A            +              R A +K
Sbjct: 661  EDDLSLAAVLKSPLFDLSEEDIFAIAALRGDNESVWSHLRKF----AADGNERFRAAVEK 716

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                +   ++    +     +       Q +  L T  ++        ++   +      
Sbjct: 717  LELFLRQSKNLSVHDFYARLLGSHGGRRQFLARLGTEVSDILDEFLTFTLDHESSGLPGL 776

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
               +   E         +++G+    +    +     ++A  +  +D       G +   
Sbjct: 777  QFFISTLELEAPEVKREQDKGRNEVRIM--TVHASKGLEAPIVFLVD-------GGSKAF 827

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
                   L ++ T          + +  L   +  K+ A+   L+      L      + 
Sbjct: 828  THTHLPKLRLIETDPDEPPMPAWVPVADLGNSLTQKDAARIQILAEEEYRRLLYVAMTRA 887

Query: 681  IGQAAHDFEMANGT----RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
              +                H++ + +L E +    A+ +        G  +     +R  
Sbjct: 888  ADRLVVCGYRGVRANNDTWHMMISTALSEGHPHVEAASFSDPDGEWPGIRWRVPRVERSF 947

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
              ++ +   D           +P PP    PR  S S    +I++               
Sbjct: 948  EGINRSEARDD-EISLPEGLLRPLPPQAELPRPLSPSGAGTIIDEDEGGLVVASPLFSEK 1006

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
                +     ++G L H ++  L     ++         ++            P      
Sbjct: 1007 QRSDRSL---EKGRLLHRMLQALPDIPPDERPGAAQRYGERAAR-------FWPEA---E 1053

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKSGFVD 914
            R          L+ ++      E+    +     + ++     ++G  DR+ +L    V 
Sbjct: 1054 RRKLVDSVLKLLDEKDLQPVLGEQARPEVSIMGTLMLDGRRYAVSGRIDRLAVLDD-RVV 1112

Query: 915  ITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945
            I DYKT   P             QL++    L 
Sbjct: 1113 ILDYKTNRVPPATEEAIPFAHRAQLAIYREILA 1145


>gi|325109169|ref|YP_004270237.1| exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305]
 gi|324969437|gb|ADY60215.1| Exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305]
          Length = 1168

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 107/1022 (10%), Positives = 256/1022 (25%), Gaps = 168/1022 (16%)

Query: 73   TILP-IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELA--------------RLIL 117
              LP  ++SL    +      LL       P  + +R++ L               +L  
Sbjct: 205  VFLPERMRSLSQESDAPLLFSLLRENECTAPKMSERRIVLLGLLEELERTGTLSREQLED 264

Query: 118  IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY 177
            +  N      ++ +   P            L K +  +ID++         L        
Sbjct: 265  LKDNAKIQGARENHWPDPEVHHQVKEACERLRKEVGALIDVLT--------LDEEAVRLA 316

Query: 178  GMWWLLAADFLKIASKYWTERLVEL-----NASSPVGYQIALMRAEAEHLMKGTKGPIII 232
              + + A    +     + +   +      +        +   R  A+  ++ +   +++
Sbjct: 317  ARYGMQALRITESVVAAYEQAKQDRAMLDFDDLLLNLRDLLQTRPAAKEQLQKSTKFLLL 376

Query: 233  AGSTGSIPATARLMSTVANHP-NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
                 + P  + ++  +         +    D       +            S       
Sbjct: 377  DEFQDTDPVQSEIVRAICGDRLTSGGLFLVGDVKQSIYRFRRADPTVFRQLRSEI----- 431

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
            PQ     L      ++  +  +  +     G      ++F   D      T+ L    P 
Sbjct: 432  PQKGQLALTKNFRSQQGVLDFVNFLFGPAMGEEYDALEAFDQTDYPPAEKTEFLFANDPE 491

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSL--------------------DENKKKSAL 391
            + K  +  A +       EA  IA  +   L                            +
Sbjct: 492  LTKPSAGEARVV------EAEWIAARIEELLSDPTPRVRKRDKATGEVTLRRVEPGDITV 545

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +    +     +  L +  ++  + AG           + +L   +    D   +  +++
Sbjct: 546  LFRAFSNLGLYEDALRKRHLDYYVVAGRAFFAQQEVFDMVNLCRYLDDDTDETTLVGVLR 605

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             PL  +                                      ++ +          S 
Sbjct: 606  SPLFGWNDD-------------------TIMQMGRQFGEFSPALLSDEMPAGVTTDQASA 646

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            +    + L  LL   +   I PL+ +   + +    L      +  V  L+ +       
Sbjct: 647  VKSARRVLRELLGRRLSSGIGPLLRFAVEQTAYDAALMTEFLGERKVANLRKLLDMADDF 706

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                +                     +   A   ++ I+     E      E  + + ++
Sbjct: 707  DQVGFL-------------------GMSEFADRLLESISEEAKEELAATHPESGNVVRLM 747

Query: 632  GTLESRLLNFDTLILGGLNEGVWP-----------------KNTAKNPFLSRVMQSDLNL 674
               +S+ L F  + +  +N                         A+    +  M    + 
Sbjct: 748  TVHQSKGLEFPVVFVADVNRPSRNNTDTAVLSPVLGPLLGLPRGAETEQKNPGMMMHSHA 807

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS-------RWLQRLLVLGGTDF 727
            +  E         +        L+   +  +       S       R+  +  +  G   
Sbjct: 808  EGLEDQAESIRLFYVATTRAADLLILSAYFDEETKASGSWMKLLQERFDLQTGLPHGDQL 867

Query: 728  FDNLKKRGQC---------------------------YLDWTRKLDYTTKQPHYKRPKPF 760
                ++ G                               DW   L  T          P 
Sbjct: 868  LGQTQQAGIERDRIPRIAVRSEIPQVAKPKKVPRKLKLADWDDVLATTEPVAPPAIALPL 927

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
             P  A    +S SE++ + +  ++         +      +  +    G L H  + +  
Sbjct: 928  EPDRAYRERFSVSELESVDSSFHSAMVTSGSTSNEASAAVRLREAELLGNLLHAALEQFD 987

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
                  N  E    +      +       P +       F ++  S    E K      +
Sbjct: 988  PALPPDNLSEFIERLATGFSDYIA-----PDLRETAVSRFRQLLDSDFILELKTAG---R 1039

Query: 881  IFVNIPAKMAIE----SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP 935
            ++      +            + G  D +     G   + DYKTG+ P            
Sbjct: 1040 LYRETEFLLRWSRPEVGRPAFIAGTVDCLLQDSEGAWHLIDYKTGNLPAEPSAVVDKFGL 1099

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI-TNDKKKYSADELSEKSLKNL 994
            Q++L A      +  Q+      ++  +++ +  +   I    ++    +   ++++  L
Sbjct: 1100 QMTLYA-----KAIEQLTGNPPRSIRIVQVNENPRTVKIDLTAERIRDFEAAIDQAIVFL 1154

Query: 995  IE 996
              
Sbjct: 1155 RS 1156


>gi|260904113|ref|ZP_05912435.1| UvrD/REP helicase [Brevibacterium linens BL2]
          Length = 1061

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 84/824 (10%), Positives = 219/824 (26%), Gaps = 98/824 (11%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRA--EAEHLMKGTKGPIIIAGSTGSIPATARL 245
            L         R + ++ S  V +   ++     A    +     +++     +  A  +L
Sbjct: 229  LADEYMAAKRRNLAMDFSDQVRFAQRILDEVPAARRAEQHRWKIVLLDEFQDTSVAQLKL 288

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            +    +  +   V    D       W   +  +    SS+                 L  
Sbjct: 289  LR---DLFHSTAVTAVGDPRQAIYGWRGASADNMIRFSSDFHDVESL---------TLST 336

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
               +  R+  V+N          ++ L   T        ++         F  V L    
Sbjct: 337  SWRNDHRILTVANRTANGLAGSRETPLSARTGAGEGDVAIDISSGAHDPDFLTVGL---- 392

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
              R     +A         +   +A++   R     V   L   G  + +     L +  
Sbjct: 393  --RSLTEWVASL------PDGSSTAVLCRKRAHFAPVAAALETAGYAVHVHGSSGLLSDP 444

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR--AKNALELVALRGNKNSY 483
              + L ++L A        ++  L+   L   G  +    +   +   +           
Sbjct: 445  FVADLRAVLTAAVDPMAGDSLMRLISGRLLGLGATDIAALQSFTRRQNDSRVTEFLGEDP 504

Query: 484  DIMDLKSL-VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ---CITPLVTYKT 539
            +   +    +      +  +  V  +++         A  +V +          L     
Sbjct: 505  ENSGVVPENIDQATIVEGLDELVDLFEALSGSAKFPGARAMVSNFRNSGLSELALKRLVR 564

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE---TGS 596
               +     S S      +         +                +           + +
Sbjct: 565  LAQALRHVRSGSGTIASIIRTAMTETGVDTDIWGLSDSLRNLHRSAIDSFLSAASQYSAA 624

Query: 597  CIKANAIEWIDIITRLID--GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
              + +   +++ ++ + +    +V      +  + I+    S+ L FD + +  L    +
Sbjct: 625  DDQPSVPGFLEWLSLMEEKDALSVAEPNSAAEAIDIMTVHASKGLEFDAVAVPSLVVKDF 684

Query: 655  PKNTAKNPFL------------SRVMQSDLNLKTAE----------------------KY 680
            P +                    R    D +L+TA+                        
Sbjct: 685  PTSPRDPEGWMERTALPYPLRGDRAHLVDYDLRTADFDTKKALDEWVNEFIKPAIADAHE 744

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
              +    +      +H ++  +        P   S +L   +     D  D  +   +  
Sbjct: 745  EEERRLAYVAFTRAKHHLWLGAELMGARANPDEPSPFLMEAIEELNLD-VDMPEPADESA 803

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
             D      +   +                   +          P   YAR+ L++   P 
Sbjct: 804  EDRVETSVWPVPRTALVSTARRAAEWVSRAAPTGLSELAQKPTPVGQYARQALRISSRPE 863

Query: 799  FK------KDPDRTDRGTLFHNI---ITELIKKRINKNTPEIN--HLMKQIIDSHFEKEN 847
             +           T   +   +    + + ++   +  +            ++ HF + +
Sbjct: 864  REGTGAVPDRLSATALVSWRRDPNDFMKQTLRPVPSPPSRAAEIGTTFHSWVEQHFGQAS 923

Query: 848  LP----PHIDIIWRHLFHKISHSFLEHE-EKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
            +       +  I      ++  +F+  E     +      + +  ++ +      + G  
Sbjct: 924  IDIEDEQQVRPIDTATIERLQQTFIGSEFASRHAD----HIEMSFELVL--GRFRVPGKI 977

Query: 903  DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            D + +      ++ D+KT   P+++T + +   QL+L   A++ 
Sbjct: 978  DAVFITGD-HAEVVDWKTSKLPEEKTLEVMKW-QLALYRFAIQR 1019


>gi|254168521|ref|ZP_04875365.1| UvrD/REP helicase domain protein [Aciduliprofundum boonei T469]
 gi|197622576|gb|EDY35147.1| UvrD/REP helicase domain protein [Aciduliprofundum boonei T469]
          Length = 927

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 89/854 (10%), Positives = 205/854 (24%), Gaps = 143/854 (16%)

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATARLMST 248
               + + E L   +  +        +    E   K  K   +I+        A   L+  
Sbjct: 191  DVLEKYEEALDSYHRLTFGRLIYLAVNKIKEEPEKLPKISHLIVDEYQDINHAQEELIKL 250

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +  + N  +V    D       W    +                     + +  L     
Sbjct: 251  IGKNANIMVV---GDPRQTIYQWRGSDD-----------------QCFERFVTDL----- 285

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                    +  +              +T   +  +     + +I++    V +I  +   
Sbjct: 286  ---YPDAENIVIPENRRSGKNIVTVGNTVADKFENRKFEHMISIKERNGYVYVILPETPD 342

Query: 369  EEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            +EA  IA  ++  ++E          L+ +               GI   +   I L   
Sbjct: 343  DEARWIANQIQKLVNEKGLKYSDFGILLRSVGTSGDPFIKVFKGMGIPYIVGGTIGLFRR 402

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
              +  +  L N             L      K                      ++    
Sbjct: 403  EEAMAVGKLFNW------------LYDGGFFKNYRG-------------KVTEYDELVDS 437

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
             +D        +  +  N           +          D     +  L   K +  + 
Sbjct: 438  ALDDWISATGLLEGEDRNDLKAKLLKWKMDVYSGTYPNFQDAYHALLNILDFKKLDPENK 497

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                 +++  + +                  W +     L    +    T          
Sbjct: 498  IHAAIMANLGRFSNLLGDYENALRLGGNKLTWNKSNLNGLMWYINLYATTA--------- 548

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            + + ++  I G            + I    +++ L +  + +  L    +P +       
Sbjct: 549  YEEQLSEDIRGI---------DAVQITTIHQAKGLEWSVVFIPSLVSRRFPSSHVGEHKE 599

Query: 665  SRVMQSDLNLKTAE-KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
              + +        + +   +    +      +  +   + R        S +L+ +L+  
Sbjct: 600  WLISRELFPASRYDLQMDDERRLLYVAVTRAKSTLVLSAFRRITNKVKISPFLEEILIEC 659

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                               + +   +        +     +    T+   EI      PY
Sbjct: 660  ---------------PKIIKAISANSDVILDVDYEGTSGEDNDIYTFDAGEIVDYTKCPY 704

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
                R I   +     +        G   H  +   ++   N   P     +   +   F
Sbjct: 705  FYRLRHIWNYEAPLAEELG-----YGKALHYCLRRAVEIHKNGLNPFS--AILTAVKKDF 757

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
                 P H     +    ++    LE+     + IE +   +  ++        +TG  D
Sbjct: 758  YLPYAPSHKAEKMKEGAQRML---LEYVANNLNDIESVA-EVEYRLEFPQKNSTITGKVD 813

Query: 904  RIDLLKSGFVDITD---------YKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
                       I D         YKT     K      +  Q+ L A  LK   +  +  
Sbjct: 814  ----------VIIDRGENVEVREYKTSTKVTK---PHHVALQVHLYALGLKGLGYK-VGK 859

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014
              V    Y+              + +    ++SE +L N  +    + +           
Sbjct: 860  GSV---VYLS-------------ESRIDPIDVSEDALANARKYAEGILDNIHNQKYEPAP 903

Query: 1015 SEKSNIQSEYDHLA 1028
             E      +Y ++ 
Sbjct: 904  GEF-CENCDYRNIC 916


>gi|82778198|ref|YP_404547.1| exonuclease V subunit gamma [Shigella dysenteriae Sd197]
 gi|81242346|gb|ABB63056.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella dysenteriae
            Sd197]
          Length = 1122

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 114/1083 (10%), Positives = 260/1083 (24%), Gaps = 159/1083 (14%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTFLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
               ++ +   G+ +TG+   + +   G              P   +  +    QL LE  
Sbjct: 939  QSMEIDLACNGVQVTGWL--LQVQPDGLLRWR---------PSLLSVAQG--MQLWLEHL 985

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
               A                           +  D +       +E++L  L +++   +
Sbjct: 986  VYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYR 1028

Query: 1003 NGE 1005
             G 
Sbjct: 1029 EGM 1031


>gi|50954629|ref|YP_061917.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951111|gb|AAT88812.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 1125

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 115/1053 (10%), Positives = 238/1053 (22%), Gaps = 150/1053 (14%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGK-----------KSTILPIIKSLGDVVEEKFTADL 93
              V     T++A  EL     +   +                P + +        F  + 
Sbjct: 93   PEVLGLTFTRKAAGELAERVRKRIEQLAASGLTEIEFDPFEAPDVATYNAFANAIFRENA 152

Query: 94   LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
            L              +L  A    + R  + D   D   +   ++       + L++ L+
Sbjct: 153  LFIGREPEAA-----VLSEASAWQLARRVVVDSADDRLADLDRNVDAVTTAVLNLSRALS 207

Query: 154  DIIDIIETEEKKWE------DLHALKNEKYGMWW--------LLAADFLKIASKYWTERL 199
            + I       +  E      DL      K G +         + A   L   ++ + E  
Sbjct: 208  ENIAGAAEVGRMAEGFGRVIDLPTGSARKAGPYATVKAAVETVGALPSLLGLAERFAEEK 267

Query: 200  VELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
                           +             +     +++     +     RL+ST+ +   
Sbjct: 268  RRRGFVEYSDQVALALAVCERLPDVVDDYRRRYRVVLLDEYQDTSVVQTRLLSTLFS--- 324

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
            G  V+   D H     W   +  + +  +++ T                  +R D   L 
Sbjct: 325  GEAVMAVGDPHQSIYGWRGASAANLSRFATDFTG---------------RPRRADEYVLS 369

Query: 315  NVSNEMYGR--SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                       +  I  + L   +                +   +    +E + E   A 
Sbjct: 370  TSWRNPTRVLDAANILVAPLGAVSPVRVERLRARPGAVAGELACTFGQTVEEEAEAIAAW 429

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                  R   +     +A++             L+R  +   +     L      + L S
Sbjct: 430  FAERIARRDAEGTLPSAAMLCRSIKKIEVFTAALSRHRVPFHVLGLGGLLEQPVIADLVS 489

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN-ALELVALRGNKNSYDIMDLKSL 491
             L  +        +  L+     + G  +    R     L     R  +   D+ D    
Sbjct: 490  ALRVMHDPTAGSELIRLLTGARWRVGPKDIAALRRVASWLAGCDHRFQELEPDVRD---- 545

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
               R +     +           E  E    L       +  +       +       + 
Sbjct: 546  -RLRRSVAGEESASLVDALDFVVEAPEGHRQLSAFSGSGVERMRAAGRQLDQLRSRAGLD 604

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                +T+   +     E          +      +                     +   
Sbjct: 605  LLDLVTIVQQELRLDIEVAANETAQLGQASLDAFAEQVASYLASDDRATLGSFLSWLAEA 664

Query: 612  LIDGETVKPKIEKSST-LFILGTLESRLLNFDTLILGGLNEGVWPKNTAK-------NPF 663
                       +     + IL    S+ L +D + +  L EG  P               
Sbjct: 665  EKRDNLAPRSEDPEPGTVQILTIHGSKGLEWDVVAVPRLVEGELPVPPQSRRGWLAFGQL 724

Query: 664  LSRVMQSDLNLK------------------------TAEKYIGQAAHDFEMANGTRHLIY 699
             +        L                          A     Q    +      R  + 
Sbjct: 725  PNEFRGDSAELPVLPWRTVEDQKALDGAIADFEAENLARHRDEQRRLVYVAVTRARESLL 784

Query: 700  TRS--LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
                     + P     +L+ L   G                         +        
Sbjct: 785  LTGSYWSTQSRPRGPGAYLRELQGAGLIAGDAFPPCDDPEDNPLAPASRTVSWPLDPLGA 844

Query: 758  KPFPPLEAQPRTYSFSEIKQ-----LINDPYAVYARRILKLDF----------------- 795
            +      A     S              D   + A R  +                    
Sbjct: 845  RRRSVETAAEAVRSARARGAGDGGVYARDLDLLLAERARRPSESGLVELPARIPASRFKD 904

Query: 796  -------------IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                          P  ++   +T  GTLFH  + E       +                
Sbjct: 905  YVSDPAGVASALRRPMPERPYRQTRLGTLFHRWVEERYGTVAGRADELDATA-------- 956

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
               E   P  +I+       +  +F   E   ++        +  ++ I   G  +    
Sbjct: 957  --HELDDPAGEILEAERLADLQATFAASEWAARAPD-----EVELEIHIALAGQVVVCKL 1009

Query: 903  DRIDLLKSGFVD--ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
            D +  +  G  D  I D+KTG  P           QL+L   A     ++ I+  ++ + 
Sbjct: 1010 DAVYRIADGRHDYQIVDWKTGRAPHDVGDLDRKQLQLALYRLAFAQ--YAGIEPERI-DA 1066

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
             +  +     +       ++  A+       + 
Sbjct: 1067 VFYFVADDAVVRPSRLYSERELAERWQAAVAER 1099


>gi|325498398|gb|EGC96257.1| exonuclease V subunit gamma [Escherichia fergusonii ECD227]
          Length = 1111

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 108/971 (11%), Positives = 241/971 (24%), Gaps = 121/971 (12%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
           + AL+   +      DP  P       I V +    Q L+    +  G  + I      L
Sbjct: 2   LEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMALSQKFGIAANIE---FPL 53

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                      +L         +      +L  L+  W ++    +        L+    
Sbjct: 54  PASFIWDMFVRVLPEIPKESAFNKQSMTWKLMTLLPQWLDREDFTLL----RHYLTDDSD 109

Query: 142 PANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                 L+   AD+ D       +W     A K         +    L  A   +T  L 
Sbjct: 110 KRKLFQLSARAADLFDQYLVYRPEWLSQWEAGKLVDGLSEAQVWQAPLWKALVEYTAELG 169

Query: 201 ELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
           +             +                + I G +   P   + +  +  H    ++
Sbjct: 170 QPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLL 228

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK-------------------L 299
                 +    I +              ++         K                   L
Sbjct: 229 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRKGVDAEKLFNSEGEQDVGNPL 288

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNTDI 344
           L        D   L +  +        +                +               
Sbjct: 289 LASWGKLGRDYIYLLSDLDNSQELDAFVDITPDNLLHNIQSDILELENRAVAGVNIEEFS 348

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLAR 400
             +K   +    + V      + + E   +   L   L+E+     +   ++ AD +   
Sbjct: 349 RSDKKRLLDPQDNSVTFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 408

Query: 401 RVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
                +         +   IS      +        +LL+          +  L+  P+ 
Sbjct: 409 PFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFITLLSLPDSRFVSEDVLALLDVPVL 468

Query: 456 KFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVP 506
              F   E+ L   +  +    +R   +  ++ +L+       +                
Sbjct: 469 AARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMES 528

Query: 507 HWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                 S    + +  L  + +    + L+     +        + +W  +    L    
Sbjct: 529 AQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF 588

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
           L +             +   ++ ++ +              D + + +D E +  +    
Sbjct: 589 LPDAETEAA--MTLIEQQWQAVIAQGLGAQYNEAVPLSLLRDELAQRLDQERISQRFLAG 646

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
             + I   +  R + F  + L G+N+GV+P+  A   F   +M          +      
Sbjct: 647 P-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPRRGDRSRRDDDRY 703

Query: 686 HDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF-------------- 728
              E     +  L  +   R   +N     S  +Q L+   G   +              
Sbjct: 704 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 763

Query: 729 ----------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPRTYSF 772
                       +    Q YL   ++       P   +          P     P T   
Sbjct: 764 KVKAHITCMHTRMPFDPQNYLPGEQQSYAREWLPAASQSGEAHSDFVQPLPFEMPSTLLL 823

Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKNTP 829
             +++    P   + +  L+++F     + PD       G   + I  +L+   + +   
Sbjct: 824 ESLQRFWAHPVRAFFQMRLRVNFRAQESEIPDTEPFTLEGLTRYQINQQLLNTLVEQ--E 881

Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
           +   L ++        E        I      +      +     +            ++
Sbjct: 882 DAERLFRRF---RAAGELPYGAFGEILWETQCQEMQQLADRVIACRLPG------QSMEV 932

Query: 890 AIESIGIHLTG 900
            +   G+ LTG
Sbjct: 933 DLNCNGVQLTG 943


>gi|282163632|ref|YP_003356017.1| putative ATP-dependent DNA helicase [Methanocella paludicola SANAE]
 gi|282155946|dbj|BAI61034.1| putative ATP-dependent DNA helicase [Methanocella paludicola SANAE]
          Length = 1087

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 60/185 (32%), Gaps = 19/185 (10%)

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI-PHFKKDPDRTDRGTLFHNIITELIK 821
            + +    S S +K   + P      R+L++       ++       GT  H  +     
Sbjct: 825 FDPEEVVLSHSSLKIYRDCPKKFELARLLRMPSRYDDEEEGEGALGFGTFVHEALE---- 880

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
               KN  +    +  I     ++    P    I       I  +F             +
Sbjct: 881 -LAAKNKVKSRQELDDIAAELLKE----PGYKDIDVKRAKVIFDTF--WARNRTKLGNVV 933

Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
                    +   G   +G  DR+D L  +G V+I DYKTG  P KE  +     QL L 
Sbjct: 934 MTEQAFSFEL--GGFRFSGKIDRVDELNGNGEVEIIDYKTGREPSKEDRES----QLLLY 987

Query: 941 AAALK 945
             A +
Sbjct: 988 KLAFE 992


>gi|77164502|ref|YP_343027.1| UvrD/REP helicase [Nitrosococcus oceani ATCC 19707]
 gi|254433459|ref|ZP_05046967.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27]
 gi|76882816|gb|ABA57497.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrosococcus oceani
            ATCC 19707]
 gi|207089792|gb|EDZ67063.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27]
          Length = 1146

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 94/832 (11%), Positives = 200/832 (24%), Gaps = 79/832 (9%)

Query: 150  KNLADIIDIIETEEKKWEDLHAL----KNEKYGMWWL---LAADFLKIASKYWTERLVEL 202
            + L D +  +E EE     LH L            W         L +A         E 
Sbjct: 327  RALLDCLARLEGEEALRRALHGLRFLPSASYTAAQWQLMEALFQLLPLAVAQLQLVFQEQ 386

Query: 203  NASSPVGYQIALMRAEAEHLMKGTK--------GPIIIAGSTGSIPATARLMSTV---AN 251
                        + A  E                 +++     +  +   L+  +     
Sbjct: 387  GEVDFTEVAQRAVVALGEAEAPTDLALALDYQIRHLLMDEFQDTSLSQYILLERLTLGWE 446

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
               G  +L   D       +                           +         D  
Sbjct: 447  AGEGRTLLVVGDPMQSIYRFREAEVGLYLQAWWQGVGLLPLTPLTLSVNFRSQQGIVDWV 506

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                           I        T  +  +       P +          E  +  E  
Sbjct: 507  NQSF---------RQILPVAQEIATGAVPYSQSHAFHPPLMAPAVQIHPFFEKGSLAEAK 557

Query: 372  ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
              + +  +          A++   R     +   L   G+        PL +      L 
Sbjct: 558  RVVHLVQQTRQAAPNSTIAILVRSRGHLAGIVPLLREAGVGFRALEIEPLGSRPIVQDLL 617

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            +L  A+F L D ++  T+++ P       + Y+   ++    V  R  +    I  L   
Sbjct: 618  ALTKALFHLGDRLSWLTVLRAPWCGLTLADLYVLAGEDKQAAVWDRIQE-DACIQGLSEE 676

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
              +R+   +       +   L E  +      V+ +   +        +      ++ + 
Sbjct: 677  GRERLGRLR-----QVFAKALGERRRTSPRRQVEGVWLALGGPACVTDSIALEEASVYLD 731

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                     L+   +           E   +  +    +  ET   +  +  + ++  T 
Sbjct: 732  --------LLEREAVAGEILDFRALEESVAQLFAPPDKEADETLQIMTIHRAKGLEFDTV 783

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            ++ G    P+ E    L             D   L  L   +     +++     + +  
Sbjct: 784  IVPGLGRPPRHESHQLLLWAERPTVHYPTGDDGAL--LLAPISGAGRSQDSIYQYIKR-- 839

Query: 672  LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
              L   +         +      +H ++     + +             V        +L
Sbjct: 840  --LHEEKGEFENGRLLYVAVTRAKHRLHLFGQVDLDDTGKP-------KVPSKHSLLASL 890

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY----- 786
                +   + T  L   T+     R            +   S +      P  +      
Sbjct: 891  WPAVKGKFEATALLQRETENREEGR-----DPGDSSISGFISRLSTQWQCPAPIAGVKAD 945

Query: 787  ----ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                      LD I            GT+ H  +  +  +     +      +   +   
Sbjct: 946  IEVLPEAASALDPIEFDWAGETARHIGTVVHRYLQIIAGEGPEHWSLARITALAPALRQA 1005

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLT 899
              ++ + P+          ++    LE         S+  +          +      + 
Sbjct: 1006 LMQQGVMPNEMENAIERAREVLRQTLEDPRGRWILASNYRQARNEYSLSGVLNGR--IIR 1063

Query: 900  GFADRIDLLKSGFVDITDYKT------GDNPKKETAQKLIDPQLSLEAAALK 945
               DR  + ++G   I DYKT      G        Q+   PQL   AA + 
Sbjct: 1064 AVIDRTFIDEAGVRWIVDYKTGVHEGGGREEFLNREQERYHPQLERYAALMA 1115


>gi|254420948|ref|ZP_05034672.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
 gi|196187125|gb|EDX82101.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
          Length = 1139

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 78/811 (9%), Positives = 189/811 (23%), Gaps = 85/811 (10%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--------GPIIIAG 234
                  +  + ++     +  A                                 ++I  
Sbjct: 333  KVLTLARAHAAFYEAAKAQRGALDFPDLVARAAALLTRSGAAAWVLYKLDGGVDHVLIDE 392

Query: 235  STGSIPATARLMSTV-----ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY- 288
            +  + P    ++  +     +   +G  V    D       +     +      ++    
Sbjct: 393  AQDTAPEQWAIVRALTGEFYSGQTSGRTVFAVGDEKQSIYSFQGARPERLRQERADFLAL 452

Query: 289  -------------------STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
                               +      +  +    D  R      G+++  +  R      
Sbjct: 453  AEGAGEPFAGPELNTSYRSTEEVLAFVDAVFADPDRTRALTGPQGDIARHIPARIGQHGA 512

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE---------AISIAIALRM 380
              L P   D    +      P  Q+         A +   E         A+  +    +
Sbjct: 513  IDLWPLFLDEPAPETEAWDDPVDQESVGSARKRLARDLAREIRRQVESGLAVFDSRTREL 572

Query: 381  SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                      L+         +   L   G+ +  +  + LS+ +    L +L       
Sbjct: 573  RPAGYGDYIVLVRRRDATFEEIIRALKTEGVPVAGADRLKLSSHIVFDDLIALARFALFP 632

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
            +D +++A +++ PL        Y    +           K      DL+    +R    +
Sbjct: 633  DDDLSLAEVLRSPLCDVDEDGLYALAGR--------ENRKAGQLWRDLRDRAHERPEWTR 684

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                +    +    +        ++ +             +       ++ +     +  
Sbjct: 685  ARDALQAAIAARGGDPFAFFSQALNRVDDTGRSGRARILARLGREAEEAVDETLNQILAA 744

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                 +D    L  L        +             +  +  + ++    ++   T+K 
Sbjct: 745  ENRGAIDLETCLAQLE--AADVEVKRELEGARGEVRVMTVHGAKGLEAPIVILPDTTMKA 802

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
            K                L+   TL   G    + P +   +   S   ++    +T ++ 
Sbjct: 803  KA-----------QGPSLMPAVTLEGEGEAWLMAPGSAKDDCPASADARAARQARTDDET 851

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
            +      +      R  +       +      S W                 + G     
Sbjct: 852  L---RLLYVALTRARDRVIVMGRASSRGAEPGSWWSVIEETFDRLGEQVREVENGVRRFG 908

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
               +    T  P              P   + +          ++       L       
Sbjct: 909  VDPERRPVTTAPDRTTAALPIWATTPPPADAAARFAAPSRMEGSIRIPAPSPLARSAAGG 968

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
                R  RG L H ++  L +            L+ +  D             +      
Sbjct: 969  ASLGRFRRGDLIHRLLERLPEIAPADRPDAARRLLARETD-------------LDDAQRG 1015

Query: 861  HKISHSFLEHEEKIQS--SIEKIFVNIPAKMAIESI-GIHLTGFADRIDLLKSGFVDITD 917
              I+ +F   ++   +          +    A+     + + G  DR+ +     V + D
Sbjct: 1016 EMIAAAFSVLDDARFAPVFGPGSRAEVALTGALPGPSSVAINGRIDRLVVTPD-RVLVID 1074

Query: 918  YKTGDNPKKE--TAQKLIDPQLSLEAAALKA 946
            YKT                 Q ++  A LK 
Sbjct: 1075 YKTNRPAPDALDRVDPAYVLQAAVYVAVLKR 1105


>gi|309775327|ref|ZP_07670335.1| hypothetical protein HMPREF0983_00829 [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916909|gb|EFP62641.1| hypothetical protein HMPREF0983_00829 [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 691

 Score =  115 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/382 (13%), Positives = 116/382 (30%), Gaps = 24/382 (6%)

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           +D  +      +   + +    ++     +   L G  +  +P    K         + +
Sbjct: 192 LDDISQSSAPSQRKGVIVSDLRQAPFCR-EHQFLLGCTQKDYPAFQTKKGIFDENYHAFI 250

Query: 673 NL-KTAE-KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
           +   T E +Y               H+  +  L       + +       V        +
Sbjct: 251 STYPTMEQRYQFYLEQISAQLYAAPHIYVSYPLGTYEGKGMEAALEIEEFV---RKLLHD 307

Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
            K +   Y  +      +T             +       S S +++ +  P++ + R  
Sbjct: 308 PKAKSSPYPLYGSYEPVSTNITLSPAMAEALFVRDGNIHGSISALERYVKCPFSYFLRYG 367

Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE-KENLP 849
           L L               GTL H ++    ++   + T      +++I+       +++ 
Sbjct: 368 LSLREPMKVGFPDSYA--GTLSHYLLETFTEEYGKEYTRVAEEKIEEILMKEITVMQDVF 425

Query: 850 PHIDIIWRHLFHKISHSF-----LEHEEKIQSSIEKIFVNIPAKMAIESIG---IHLTGF 901
           P ++    ++  +I  S      L  E +  S +            I       + L G+
Sbjct: 426 PSLEKKLENVAQRILTSMTQTLSLLDEYEQHSLLSPYQSEKEFHYQIPLNEKVNLALKGY 485

Query: 902 ADRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
            DRID     F+ I DYK+      +      +  QL   A  + +  F +    +V   
Sbjct: 486 IDRID-TSDEFLCILDYKSSAKTLSQTNVFAALQLQLLTYA-IVCSKEFQK----RVLGA 539

Query: 961 FYIRLKQKFKIDCITNDKKKYS 982
           FY+ LK +          ++  
Sbjct: 540 FYVSLKNENIPYTAGKLSRRKP 561


>gi|240850877|ref|YP_002972277.1| DNA helicase II [Bartonella grahamii as4aup]
 gi|240268000|gb|ACS51588.1| DNA helicase II [Bartonella grahamii as4aup]
          Length = 779

 Score =  115 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 92/746 (12%), Positives = 198/746 (26%), Gaps = 122/746 (16%)

Query: 1   MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
           M+ + P +      +   R +        +    R    +P     +     T +A +E+
Sbjct: 55  MNTEGPLLVLAGAGTGKTRVLTT-----RISHILRSGLASPQ---QILAVTFTNKAAREM 106

Query: 61  RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
           ++   E+ G     +P + +      +                  ++R  EL  L   + 
Sbjct: 107 KTRIGELIGGVVEGMPWLGTFHSTGAKI-----------------LRRHAELVGLKRNFT 149

Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
               D +  L  +  L       +  W A+NLA +ID  + +    E +       +G  
Sbjct: 150 ILDSDDVLRLLKQ--LIQAEGLDDKRWPARNLAMMIDSWKNQGLSPEHISKSDAHSFGN- 206

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGS 235
                   +     +  RL +LNA       +  +       +           I++   
Sbjct: 207 -----GMGRELYHSYQNRLKDLNACDFGDLLLHSISIFQHNPDILREYHSQFRYILVDEY 261

Query: 236 TGSIPATARLMSTVANHPNGAIVLP--GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
             +  A    +  +A HP G  V      D       W     ++      +      P 
Sbjct: 262 QDTNTAQYLWLRLLAQHPQGQHVNLCCVGDDDQSIYGWRGAKVENILRFEKDF-----PS 316

Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
             + +L          +K   ++      R   +                        I+
Sbjct: 317 AKIIRLERNYRSTSHILKTASHLIAHNEERLGKV-------------------LFSAQIK 357

Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGI 411
                V +  A + +EEA +I   +  +          A++       R  +      G+
Sbjct: 358 SEEEKVKIHSAWDSQEEARAIGEEIEQAHQTGHALNHMAILVRASFQMREFEDRFVTLGL 417

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
           N  +  G      +      + L  + +  D +A   ++  P    G             
Sbjct: 418 NYRVIGGPRFYERMEIRDAMAYLRVVVQPADDLAFERVINTPKRGIG------------- 464

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                             + +     + +         +    E  EL       +   I
Sbjct: 465 -----------------DATLRILYESARARAVPLFSAAADIIETDELKPKARSALRSLI 507

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
                ++     T            +      +          L      K +     + 
Sbjct: 508 ENFRRWQNMLQDTPHKELAEIILDDSGYTTMWLEDRSPEAPTRLEN---LKEMIRSMEQF 564

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                        +++ +  ++D E      E +  + I+    ++ L F+T+ L G  E
Sbjct: 565 EN--------LQSFLEHVALVMDAEN----NENTDAVNIMTLHSAKGLEFETVFLPGWEE 612

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN--IP 709
           G++P   + +         +      E+    A      A    H+ +  + R +     
Sbjct: 613 GLFPHQRSLD---------EGGRSGLEEERRLAYVGLTRAKKHLHIWFVSNRRIHGLWQS 663

Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRG 735
           T+ SR+L  L               G
Sbjct: 664 TLPSRFLDELPAEHIEAIAMETSYGG 689


>gi|192288510|ref|YP_001989115.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris
            TIE-1]
 gi|192282259|gb|ACE98639.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris
            TIE-1]
          Length = 1161

 Score =  115 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 98/856 (11%), Positives = 218/856 (25%), Gaps = 76/856 (8%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE--KKWEDLHAL 172
            L    + +   +   L     L+L       + +A  +A  I   + E     ++DL   
Sbjct: 317  LAERLQREGARLAGLLERRRALALRERTRALLVIAAQVAGNIAREKRERGLLDYDDLID- 375

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232
                           L   +  W    ++                  +      +     
Sbjct: 376  ----------KTLAMLDSGAAGWVHFKLDRGVDH--VLIDEAQDTSPKQWKIVARLIDEF 423

Query: 233  AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
                G+     R +  V +         G          + +  + T    +    S + 
Sbjct: 424  TAGEGARDGVRRTIFAVGDEKQSIFSFQGAVPKEFAEWRDLLQRRFTGAGLTFEKVSFNY 483

Query: 293  QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
             +     +            +    +      +  S +   P + D+   ++ +++    
Sbjct: 484  SFRSGAAILQSVDHVFRDPAIYRSIHADSTYPLHQSLADAGPSSIDLWPLEVPDDRQQIE 543

Query: 353  QKCFSDVALIEADNEREEAISIAIAL--------------RMSLDENKKKSALITADRNL 398
                   A+ E   E   A  +   +              R           L+    + 
Sbjct: 544  GWQAPFDAVSETSPEVRLADKVRAEIGALIARGTQTGPMGRRRPLSYGDVLILVRRRGSA 603

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
               V   L R GI +  +  + L+  +    L  L +A+    D +A+A  +K PL    
Sbjct: 604  FDAVIQALKRGGIPVAGADRLKLTEHIAIIDLMKLADALLLPQDDLALAVALKSPLFGLD 663

Query: 459  FPEKYLSRAKNA----LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              + +    +        L       + +  +  +       A  +       W      
Sbjct: 664  DDDLFKLAWQRKGSLSAALADHAAGDSKFAAVQRRLESYAARAQAETPFGFYAWLLGGDG 723

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             D   A +L     +    L  +     S     + S                   +   
Sbjct: 724  SDSGRARILRRLGPEANDALDEFLELALSFEQKRAPS------------------LQGFV 765

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
             W  E    +        +    +  +  + ++     +   T  P   +   L  L   
Sbjct: 766  AWLREADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLIDTTSSPADTQRLNLIRLPGG 825

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
             +   +   ++  G          A +P +    +S +  +T ++Y         M    
Sbjct: 826  NAAPGSVAAMVWAG--------RKADDPHIVEQARSAMIEETEDEYRRL--LYVAMTRAA 875

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ----CYLDWTRKLDYTTK 750
              LI    +  N        W   +     +          +     Y      ++    
Sbjct: 876  DRLIVGGCMPGNRNEVRPHSWYDLISKGLESSGLVMQPVPPEGVIKRYCRPEDVIEEIGT 935

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                +        +   R        + +  P         +L              RGT
Sbjct: 936  VSQGQELAVTHLPDWLRRPAPGLPSAEQVLRPSDAEDDDRRRLRPGESDASRSRALQRGT 995

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
            L H ++  L +  +          + +      E++       ++      + +  F   
Sbjct: 996  LVHRLLQSLPEIAVADRPAAAGRFLARNASDWSEEDRAALAAQVLGLIADARFAAVF--- 1052

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
                  S  +  V I  ++      + ++G  DR+ + ++  V I DYKT   P +  A+
Sbjct: 1053 -----GSGSRAEVPIVGRLQWRGGPVLVSGQIDRLVVTET-EVLIVDYKTNHAPPRVEAE 1106

Query: 931  KLID--PQLSLEAAAL 944
                   QL+   A L
Sbjct: 1107 APRSYVRQLARYRAVL 1122


>gi|313682830|ref|YP_004060568.1| hypothetical protein Sulku_1707 [Sulfuricurvum kujiense DSM 16994]
 gi|313155690|gb|ADR34368.1| hypothetical protein Sulku_1707 [Sulfuricurvum kujiense DSM 16994]
          Length = 817

 Score =  115 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 56/465 (12%), Positives = 132/465 (28%), Gaps = 55/465 (11%)

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            +  ET  P +++   +++    +     F  +I  G  +       +K  FLS   Q + 
Sbjct: 341  LAEETYIPPLKEDYGIWVAEPNQMTQHVFKHIIFIG-TDLSVFPPKSKGNFLSTPDQREH 399

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             L     Y+    +  ++      L  + +L+E       S  +  L V+    +    +
Sbjct: 400  YLGVDNSYLLSQYYFDQLRRNCESLHISTALQEGKKKLFISPIITDLPVIRLEGYEMESE 459

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRP-------KPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                 +     + +   +                      +    S S + +    P   
Sbjct: 460  NEYLLHHRRFHQDERFEEYVSSMHANETGHYDGLLSEHRFESGVLSASSLNEYAKCPLRY 519

Query: 786  YARRILKLDFI--PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-------INHLMK 836
                    + +         + +D GT+FH+I     K+    +          I   ++
Sbjct: 520  LLTYQYGAEPLMIERDDDALEASDIGTIFHSIAEVFSKEVKAGSIDLGDEATIPIKERLQ 579

Query: 837  QIIDSH----FEKENLPPHIDIIWRH--LFHKISHSFLEHEEKIQSSIEKI--------- 881
             I         +K  +         H  +   +     E   +    I  +         
Sbjct: 580  AIATDVHQSYIQKHIVDEGKTPNIFHEIVLDDLLKGLFEEHHERGLLIRFLDYVYTNGKL 639

Query: 882  -FVNIP---------AKMAIESIGIHLTGFADRIDLLKSGFVD-ITDYKTGDNPKKE--- 927
                             +  +     + GF DRIDL K   +  + DYKTG   K +   
Sbjct: 640  EHFEKSEQRFLLDDDFMITADKDKAIVKGFIDRIDLDKENKILTVIDYKTGKYSKDKENR 699

Query: 928  ---TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
                       QL L      + +++        + + + ++         +     +  
Sbjct: 700  LIEEMGSFKQFQLPLY-LLYASQAYAD----HTIDSYLLAMRDGKGTKGYAHMSTDEANG 754

Query: 985  ELSEKS-LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             L  ++  + L   +  ++ G +     +  S+ +     ++ + 
Sbjct: 755  LLFNEAYAQGLKLRIREIKAGIEEGDFRMSPSDTNCEYCPHERIC 799


>gi|183981382|ref|YP_001849673.1| ATP-dependent DNA helicase [Mycobacterium marinum M]
 gi|183174708|gb|ACC39818.1| ATP-dependent DNA helicase [Mycobacterium marinum M]
          Length = 1101

 Score =  115 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 114/1071 (10%), Positives = 252/1071 (23%), Gaps = 159/1071 (14%)

Query: 3    NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57
            +++  V    P          A    T+     +   N       V     T++A     
Sbjct: 21   DEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLL 80

Query: 58   QELRSEFIEITG-------KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL 110
            + +RS    + G        ++   P + +        F   LL  + L  P+    RLL
Sbjct: 81   RRVRSRLARLAGTTVGVAVGEAAGAPTVST-----YHAFAGSLLRDHGLLLPIEPDTRLL 135

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIETEEKKWE 167
                L  +    +     +L   +  +     A  + L   LA+ +     +     + E
Sbjct: 136  SETELWQLAFEVVNGYRGELC--TQKTPAAVTATVLRLWGQLAEHLVDTRQLRDTHIELE 193

Query: 168  DLHALKNE----KYGMWWLLAADFLK---------IASKYWTERLVELNASSPVGYQIAL 214
             L          +           L                 ER+             A 
Sbjct: 194  RLVHALPAGPNQRDSGPNQWLLRMLATQTERAELVPLLDALHERMRAAKVMDFGMQMAAA 253

Query: 215  MRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIP 267
             R      +    ++     +++     +  +    +S +      +G  +    D    
Sbjct: 254  ARLAATCPQVGEELRSRYRVVLLDEYQDTGHSQRVALSALFGGGVDDGLALTAVGDPIQS 313

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               W   +  +    S++   S      + +L          +     +S E   RS+ +
Sbjct: 314  IYGWRGASATNLPRFSTDFALSDGAPAPVLELRTSWRNPPRALHLANAISAEARRRSVAV 373

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQK-------------CFSDVALIEADNEREEAISI 374
                  PD         L   +   +                  V+   A        + 
Sbjct: 374  HALRSRPDAPAGTVRCALLADVQAERDWIADQLQGHYQRAAADGVSPPTAAVLVRR-NAD 432

Query: 375  AIALRMSLDENKKKSALITADRNLARRVKLEL------------TRFGINIDISAGIPLS 422
            A  +  +L        ++     L+     +L                + +       L 
Sbjct: 433  AAPIADALVARGIPVEVVGLAGLLSIPEVADLVAMLRLVGDPTAGAAAMRVLTGPRWRLG 492

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             +  +++    +  +       + +       A        L+ A           +   
Sbjct: 493  GSDVAALWRRAVALVGGPQVGASASPGAVAAAAGPDTDTACLADAICDPGPADWYSSAGY 552

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI--TPLVTYKTN 540
              I  L + +        +       + R                        L  +   
Sbjct: 553  ERIGALAAELNALRGHLGHWLPDLVAEVRRVLGLDCDVRAAATASGAWAGAEHLDAFADV 612

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE----EEGKTLSSLFSKIIETGS 596
                    +IS  + L+     +  L        +       +       +    +    
Sbjct: 613  VADYAERAAISAGSALSTKASVDGLLAYLDVAAEVENGLPPAQLTVARDRVQVLTVHAAK 672

Query: 597  CIKANAIEWIDIITRLIDGETVK----------PKIEKSSTLFILGTLESRLLNFDTLIL 646
             ++   +    +   +      +          P + +     +       L        
Sbjct: 673  GLEWQVVAVAHLSAGVFPSTASRSSWLTDPGELPPLLRGDRASVGALGIPVLDTSAVTNR 732

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDL--NLKTAEKYIGQAAHDFEMA----------NGT 694
              L++ +       +       +  L   +  AE  +  + H +                
Sbjct: 733  KQLSDTISAHREQLDQRRVDEERRLLYVGVTRAEDTVLVSGHHWGATGLKPRGPSDFLCE 792

Query: 695  RHLIYTRSLRENNIPTIASRW----------------LQRLLVLGGTDFFDNLKKRGQCY 738
               I  RS    +      +W                ++ +             +RG   
Sbjct: 793  LKDIIERSAAAGDPCGTVDQWDPAPVAGERNPLLDDVVEAVWPTDPLATRRGDVERGARL 852

Query: 739  LDWTRKLDYTTKQPH--------------------YKRPKPFPPLEAQPRTYSFSEIKQL 778
            +      D   + P                      +     PP  A P   S S + +L
Sbjct: 853  VAEAISADAGVEAPAGGAAVADIEGWTADVDALLAERARAVGPPTRALPNQLSVSGLVEL 912

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
              DP     R + +L   P           G  FH  + +     +  +  ++       
Sbjct: 913  ARDPVGARQRLVHRLPTRPDPHAQL-----GNAFHTWVQQFYGAELLFDLGDLPGAADSD 967

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
            +                       +  +F       +     I V +P +M +      +
Sbjct: 968  VGQV---------------EDLAPLQEAFAGSPWAAR---TPIAVEVPFEMPVGDT--VV 1007

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE--AAALKAG 947
             G  D +     G   + D+KTG+ P+   A +    QL++   A A   G
Sbjct: 1008 RGRIDAVFEDPDGGATVVDWKTGEPPRGPEAMRQAAVQLAVYRMAWAALRG 1058


>gi|254281652|ref|ZP_04956620.1| UvrD/REP helicase [gamma proteobacterium NOR51-B]
 gi|219677855|gb|EED34204.1| UvrD/REP helicase [gamma proteobacterium NOR51-B]
          Length = 1113

 Score =  115 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 87/890 (9%), Positives = 206/890 (23%), Gaps = 100/890 (11%)

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES-P 135
             +++  D   +     L    +    +S     LE  R +        D ++     +  
Sbjct: 246  RLRTRHD-SHQATARTLKPPAHAPLELSADPEHLEQWRFVASLVLTGGDQVRKGGGVTVD 304

Query: 136  LSLPISPANAIWLAKNLADIID------IIETEEKKWEDLHALKNEKYGMWWLLAADF-- 187
            +        A  L +    I+D       +  E  +   L ++        W L      
Sbjct: 305  IGFSAESDEAKRLKQRFVAILDAVRADDSLRREWVELRRLPSMDAS--AEGWQLVLHLSH 362

Query: 188  -LKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGS 238
             L +   +      + +        +A   A             +      I++     +
Sbjct: 363  LLPVLQAHLLLVFRQRSQVDHAHVALAAEMALGDEEAPTDLALRLDYQLEHILVDEFQDT 422

Query: 239  IPATARLMSTVANHPNGA--------IVLPGLDCHIPTAIWNTI--TEKSTNITSSNTTY 288
                 RL+  +                +    D       +            T   +  
Sbjct: 423  SLPQFRLLERLTRGWQEHNSGAAIPRTLFIVGDGMQSIYGFRDANVELFLRARTRGISDI 482

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
               P Y          I          +  E                          E  
Sbjct: 483  PLVPLYLSRNFRSQAGIVDWVNATFSRLFPEQED------------SVKGGVVHSPAEAT 530

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRM-SLDENKKKSALITADRNLARRVKLELT 407
                      VAL        EA  IA  +      E     A++   R+  + V   L 
Sbjct: 531  REKTSGAAVSVALFPKQRGAVEASFIAEQIADIQAHEPTASIAILGRTRSNLQPVIHALK 590

Query: 408  RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
              G+        PL  ++  + L SL   +    D +A   L++ P       +      
Sbjct: 591  ARGLPFTGRDLDPLDESVVITDLMSLCRWLANPADSVAALGLLRAPFCGLRLADLQTLLE 650

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
              A         +    +  L +      A +             + E +    L +   
Sbjct: 651  GVA---------RPLPLLAVLDAAPARLHAAEAARATHLRTTLSWAREKRGRLALDIWIE 701

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                   ++  T  +      +  D  +        + +          +  +G   +S+
Sbjct: 702  QIWQRLAMSAVTPVDRLIEARAFFDLLREAERQGVGLDIAWLEYEVARLYAPQGAQQTSI 761

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
                +     ++ + +    +            +  ++ T  +L     +      +++ 
Sbjct: 762  ELMTLHKAKGLEFDYVFIPRL-----------DRPSRADTRQLLSWNLHQGPEGPEVLIA 810

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
              +       T     +    Q          Y+G          G R +  +  +    
Sbjct: 811  ADDSSENGDPTLYQYLVWLQRQRTEAEIRRLLYVGITR-------GRRRVWLSGEVESEG 863

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                                       G         +D++T     +  +P P +  + 
Sbjct: 864  QEYRM---------------PGEKSLLGMVISATDEVVDFSTGPGSTEPIEPSPAVFMRL 908

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK--KRIN 825
            ++         +N   +   R  +                 GT  H  +  + +  +   
Sbjct: 909  KSVPRGREVDSVNAGLSNANRPEILAVNDNRVD-----RAVGTAMHRGLELVARYPELPA 963

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
            + T +++  ++  +       ++      +   L   +  +                  +
Sbjct: 964  QCTAQLSTAIRYSLLQSGLVGDIEAAQQRVEWLLNQALGDATGRWILAQHEEAHCELAIV 1023

Query: 886  PAKMAIESIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPKKETAQKLID 934
                             DR  +   +G   I DYKT    + ++ +    
Sbjct: 1024 SGSGEFGES------VIDRTFVDRATGERWIIDYKTSGPGEGQSVESFYS 1067



 Score = 38.0 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 75/730 (10%), Positives = 175/730 (23%), Gaps = 34/730 (4%)

Query: 30  LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKF 89
           L + F         L  +     T++A  E+R+  +             + + D  E + 
Sbjct: 31  LTQRFMALMPRVAKLEQILALTFTRKAAAEMRARILSELDA----ARDNRPVNDDFERQS 86

Query: 90  TADLLLSYNLNPPVS-NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
                 + +    +  ++Q      R I  +   L   +  L       L  +  +A  L
Sbjct: 87  RQLASTALDHATSMGWSLQADGFNIRTIDSFCAYLTRHMPILSESG--GLMQTADDARPL 144

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
            +     +     E     +  A     Y   W   ++ L        +    L   +  
Sbjct: 145 YEEAVRALFQSVGEPNPTGEALAALLLAYHNNWARLSEMLVELLGRRGDWAGLLGHHNNP 204

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                 +      L+      +                S       GA            
Sbjct: 205 QAAEQAVNRAVAELVSTQLAKV---------GKQIARYSDFQELCEGAAGRLRTRHDSHQ 255

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
           A   T+   +      +       Q+        L +   D  R G       G S    
Sbjct: 256 ATARTLKPPAHAPLELSADPEHLEQWRFVA---SLVLTGGDQVRKGGGVTVDIGFSAESD 312

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
           ++             +  +   ++++ + ++  + + +   E   + + L   L   +  
Sbjct: 313 EAKRLKQRFVAILDAVRADD--SLRREWVELRRLPSMDASAEGWQLVLHLSHLLPVLQAH 370

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
             L+   R+      + L       D  A   L+      +   L + +       ++  
Sbjct: 371 LLLVFRQRSQVDHAHVALAAEMALGDEEAPTDLAL----RLDYQLEHILVDEFQDTSLPQ 426

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                    G+ E     A      +   G ++ Y   D    +  R  T+  +      
Sbjct: 427 FRLLERLTRGWQEHNSGAAIPRTLFIVGDGMQSIYGFRDANVELFLRARTRGISDIPLVP 486

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                  +      +VD +    + L   + +        S ++ T+   +         
Sbjct: 487 L--YLSRNFRSQAGIVDWVNATFSRLFPEQEDSVKGGVVHSPAEATREKTSGAAVSVALF 544

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
            ++   +      + ++ + +        I       +  +   +    +         L
Sbjct: 545 PKQRGAVEASFIAEQIADIQAHEPTASIAILGRTRSNLQPVIHALKARGLPFTGRDLDPL 604

Query: 629 -------FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                   ++          D++   GL    +      +        +      A    
Sbjct: 605 DESVVITDLMSLCRWLANPADSVAALGLLRAPFCGLRLADLQTLLEGVARPLPLLAVLDA 664

Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
             A      A    HL  T S        +A       +             R      +
Sbjct: 665 APARLHAAEAARATHLRTTLSWAREKRGRLALDIWIEQIWQRLAMSAVTPVDRLIEARAF 724

Query: 742 TRKLDYTTKQ 751
              L    +Q
Sbjct: 725 FDLLREAERQ 734


>gi|255655058|ref|ZP_05400467.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-23m63]
 gi|296451045|ref|ZP_06892787.1| ATP-dependent nuclease subunit B [Clostridium difficile NAP08]
 gi|296880602|ref|ZP_06904564.1| ATP-dependent nuclease subunit B [Clostridium difficile NAP07]
 gi|296260052|gb|EFH06905.1| ATP-dependent nuclease subunit B [Clostridium difficile NAP08]
 gi|296428556|gb|EFH14441.1| ATP-dependent nuclease subunit B [Clostridium difficile NAP07]
          Length = 1155

 Score =  115 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 85/255 (33%), Gaps = 34/255 (13%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             + S S +++    P+A + +  LK       +      D GT  HNI+    K+ +  N
Sbjct: 780  NSLSISRLEKYAECPFAYFIQYGLKARKRK--EYSFTPPDLGTFIHNILDRFSKELLQDN 837

Query: 828  TPE-------INHLMKQIIDSHFEK---ENLPPHIDIIWRH-LFHKISHSFLE--HEEKI 874
                      I   +  I+D    K     L       +       +  + +    ++  
Sbjct: 838  LSWRGIDEKYIELKIGIIVDEIILKIPGYILNSSERYKYLAYRLKNMLTTAITIISQQIK 897

Query: 875  QSSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLKSGF---VDITDYKTG 921
            Q S E I   +           K+ +E    + L G  DR+D  + G    + I DYK+G
Sbjct: 898  QGSFEPIDYEVKFGDNGKYPPIKIVLENGQEVSLIGQIDRVDEFEEGENKYIRIVDYKSG 957

Query: 922  -DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
              +         +  QL +   A+   +  +      A + Y R+        I    + 
Sbjct: 958  NKSISLTEIYYGLQLQLLVYLDAILESAKDKDININPAAILYCRINN-----PIAKFNED 1012

Query: 981  YSADELSEKSLKNLI 995
                E+ E  LK L 
Sbjct: 1013 KDDVEIQEAILKELR 1027


>gi|56750402|ref|YP_171103.1| hypothetical protein syc0393_c [Synechococcus elongatus PCC 6301]
 gi|56685361|dbj|BAD78583.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 1061

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 96/821 (11%), Positives = 203/821 (24%), Gaps = 122/821 (14%)

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            + D +  EE          ++          +  +   K    R  +         +   
Sbjct: 274  LRDRLRDEESLLSLRPNEADDWNRDQRSRIYEAFETVLKSIDARKRQDRCLDFNDLERGA 333

Query: 215  MRAEAEHLMK----GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
            +RA     ++           +     + P  ++++  + + P   I+    D       
Sbjct: 334  VRALESEAVRSHYQQRWRYCFVDEFQDTNPTQSQILQALWD-PQHLILTLVGDEKQSIYG 392

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
            +     +                 +L++         E + ++     + Y       + 
Sbjct: 393  FRGAATQVFRNWQQQIQQHQGHIVTLSQSFRTHQTLLETINQVFEPVLDPYQPLRSDRQP 452

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------ 384
              P         +  E                      +EA +IA  ++  + +      
Sbjct: 453  PHPLPPIQQLVIEPEEKDSLEQA-------------RIQEATAIAQQIQTWIQQPLLVWD 499

Query: 385  ----------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                          + L      L       L + GI + ++ G  L  T     L +LL
Sbjct: 500  KPSNQHRPIAYGDIAILCRRRAPLETVYGEVLNQAGIPVLVNGGGSLLETPVGYDLQALL 559

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
              +   ++ +A+ATL++ P       + Y    +           +         + +  
Sbjct: 560  EFLVYPSNDLALATLLRSPAFGLSDAQLYQRAQQGKGWWSH----RQERPDPAFAAAIKI 615

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                 ++       +     +       ++  + Q    L+       +       +   
Sbjct: 616  LEGLLRSRFFESPLRLVQQFDRATGYSAVLASLPQA-QRLLADWQALLTFLREQPQAHDL 674

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            +L +   + +             ++    L     K     + +  +  +  +    +I 
Sbjct: 675  ELLLRYWKQL-------------QQAEVVLPRPVLKAGNAVTLMTLHGSKGSEWPVVIIP 721

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              T KP+ +  + L            FDT +   L +    +  A   F     Q   + 
Sbjct: 722  DLTAKPRSQAETVL------------FDTELGVALRQPYVKEQAAAYQFFKYRKQQAEDA 769

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            +T           +      R L+   S         A   L  L           L   
Sbjct: 770  ETR-------RLLYVGFTRARDLLLLTS----PKSAEARSPLDLLAPGLEQAAIQPLDPN 818

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                +  T  L        ++      P        S S        P   + R      
Sbjct: 819  SGTEIAVTATLPTADAPLFWQSTAAIAPQ---YSELSVSAFADYFRCPALFHFRYTQGHP 875

Query: 795  FI---PHFKKDPDRTDRGTLFHNIIT------ELIKKRINKNTPEINHLMKQIIDSHFEK 845
                             G L H  +       E +K        ++     Q+  S F  
Sbjct: 876  GAIDGEGAGTSDRPPQLGLLVHRALELDLRQPEALKPYCAAEDQDLIPQALQLA-SCFAT 934

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
            E +   +    +                           +   + + S G+ L G AD +
Sbjct: 935  EPVYSAVREQAQQR------------------------EVTLHLEL-SSGLVLKGRADLV 969

Query: 906  DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
                 G   + D+KT   P+ E        QL   AAAL  
Sbjct: 970  -----GADWVLDFKTDQQPQPEN----YQLQLWAYAAALNR 1001


>gi|284047260|ref|YP_003397600.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
 gi|283951481|gb|ADB54225.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
          Length = 1052

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 127/1094 (11%), Positives = 255/1094 (23%), Gaps = 163/1094 (14%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             TLV    +         S+     ++RA   LR    +        L  + ++      
Sbjct: 32   RTLVARLAWLVEQGEAPESLLALALSERAADALRRHVEDTVEGPYEEL-AVMTVHGFCAR 90

Query: 88   KFTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                + L          V    RL  L   I     +  D   +        +       
Sbjct: 91   LLREEALEGGIDPFAVAVGRADRLAMLLERIDELTIRRHDFRGNPAALVASFVRR----- 145

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNE-----KYGMWWLLAA----DFLKIASKYWT 196
                      ID ++ E    E+  A                 A            +   
Sbjct: 146  ----------IDRLKDELIGPEEYAAWAESLGADGDDASDAERARGAREREFAEVYRAHD 195

Query: 197  ERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              L E  A       I  +R   +H      +      +++        A   L+  +A+
Sbjct: 196  RMLAEQGALDSGDLVIGALRLLRDHPHVRARVAARYRHLLVDDVQEPNFAHGLLLRLLAS 255

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                  +    D       +     K+     +    +T  Q     L       +  + 
Sbjct: 256  EHGN--LTAAGDDDQAIQRFRAAATKNLRDFQAELPDATVVQ-----LEHSFRCPQRVLD 308

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                V   +  R        L                         +VA   + NER +A
Sbjct: 309  AANAVVAPLEDRIEKRLDGPLG-----------------------GEVAFWRSANERAQA 345

Query: 372  ISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
             S+A  +   +        + + L+ +     + V + L    +   +            
Sbjct: 346  QSVAADVERLIGREGVPPERIAVLVRSIAREGQAVAVALEERAVGHRLIGEAAFFQRAEV 405

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLA---------------KFGFPEKYLSRAKNALE 472
              L + L  +    D  A+   +  P                 +          A     
Sbjct: 406  RDLLAWLRLLIDPADAPAVVRALARPPIELRSVDLARCTQIARRRKLDMVGALGAALESP 465

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD-----HI 527
             +           + L    +  I T + +  V     RL    ++L     +       
Sbjct: 466  QIPPEARDRIRMFLGLYRSAVGAIDTMRPDLFVHRLIERLGLRRQQLFTAQAEVVERLRG 525

Query: 528  LQCITPLVTYKTNKNSTCGNLSISD-----WTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            L     L T  T +         +               +                 +G 
Sbjct: 526  LARFGELATAFTQRQPQATPREFARSIAAAAEAGLREEEEPPPATTRGVQVMSMHAAQGL 585

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
                +F   +       A+      I   L+     +   E            +   +  
Sbjct: 586  EFDHVFVLGLHAAGLPGAHTRTLEPIAPALMKETLPEDDHEAHVAEMRRLLHVAMTRSRQ 645

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI----GQAAHDFEMANGTR--- 695
             L+L              +PF      +   +            ++ H            
Sbjct: 646  RLVLVHPQASDRGAAQPPSPFAEEARAAVGGVWEERAEELFGPAESLHSTYRILRDELLE 705

Query: 696  ----------------HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                             L  + ++         +  ++R       D    +  R    +
Sbjct: 706  TIKRTGSRIGELRFDTDLDVSHAIVRYLEVVKLAALIERSDDQSVKDALAEVNARLASAI 765

Query: 740  -----------DWTRKLDYTTKQPHYKRP----------KPFPPLEAQPRTYSFSEIKQL 778
                            L    +    +            +PF P        S S+I   
Sbjct: 766  TSEQRDILATSPLDEYLLDADRDDRTRAAAIAAREEPSLEPFLPRRGDGVMLSASDIDTY 825

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
               P      R+ ++   P   +       G L H ++             +    M  +
Sbjct: 826  RTCPLKYKFARVFRIPQEPTLNQR-----FGILVHQVLERFHSDP--SRPSQSLDEMLGL 878

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
            ++  + +         I        +      E   +   + +         +      L
Sbjct: 879  LEFGWRRGGFGGTEQEIQL-RGKATAALTRYFERFQEEPSQPVAFERSFSFRL--GPHLL 935

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
             G  DR+D L  G  ++ DYKTG    +   ++  D QLSL A A +          + A
Sbjct: 936  RGRVDRVDKLPEGGFELIDYKTGPPKSRAQLEQ--DVQLSLYAVAAREAW-----QFESA 988

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018
               Y  +    K+      + +   +E++ +  + ++          Q F      S  +
Sbjct: 989  RGAYYYVLDDAKVPVERCAEDRDWIEEIAMEVAEGILS---------QGF--EPTPSYAA 1037

Query: 1019 NIQSEYDHLARVAE 1032
                +Y  +   AE
Sbjct: 1038 CAICDYRLVCPAAE 1051


>gi|168751036|ref|ZP_02776058.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4113]
 gi|168758205|ref|ZP_02783212.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4401]
 gi|168766793|ref|ZP_02791800.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4486]
 gi|168777657|ref|ZP_02802664.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4196]
 gi|168778814|ref|ZP_02803821.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4076]
 gi|168788084|ref|ZP_02813091.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC869]
 gi|168801684|ref|ZP_02826691.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC508]
 gi|195936423|ref|ZP_03081805.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. EC4024]
 gi|208808591|ref|ZP_03250928.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4206]
 gi|208811999|ref|ZP_03253328.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4045]
 gi|208821866|ref|ZP_03262186.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4042]
 gi|209396729|ref|YP_002272285.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4115]
 gi|254794760|ref|YP_003079597.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. TW14359]
 gi|261226120|ref|ZP_05940401.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli O157:H7
            str. FRIK2000]
 gi|261256624|ref|ZP_05949157.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli O157:H7
            str. FRIK966]
 gi|187767154|gb|EDU30998.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4196]
 gi|188014855|gb|EDU52977.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4113]
 gi|189003520|gb|EDU72506.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4076]
 gi|189354929|gb|EDU73348.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4401]
 gi|189363853|gb|EDU82272.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4486]
 gi|189372116|gb|EDU90532.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC869]
 gi|189376197|gb|EDU94613.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC508]
 gi|208728392|gb|EDZ77993.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4206]
 gi|208733276|gb|EDZ81963.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4045]
 gi|208741989|gb|EDZ89671.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4042]
 gi|209158129|gb|ACI35562.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str.
            EC4115]
 gi|209761098|gb|ACI78861.1| DNA helicase RecC [Escherichia coli]
 gi|209761102|gb|ACI78863.1| DNA helicase RecC [Escherichia coli]
 gi|209761106|gb|ACI78865.1| DNA helicase RecC [Escherichia coli]
 gi|254594160|gb|ACT73521.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli O157:H7
            str. TW14359]
 gi|320640469|gb|EFX10008.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. G5101]
 gi|320645715|gb|EFX14700.1| exonuclease V subunit gamma [Escherichia coli O157:H- str. 493-89]
 gi|320651015|gb|EFX19455.1| exonuclease V subunit gamma [Escherichia coli O157:H- str. H 2687]
 gi|326343010|gb|EGD66778.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. 1125]
          Length = 1122

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
              + L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NALFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|150398434|ref|YP_001328901.1| double-strand break repair helicase AddA [Sinorhizobium medicae
            WSM419]
 gi|150029949|gb|ABR62066.1| Double-strand break repair helicase AddA [Sinorhizobium medicae
            WSM419]
          Length = 1189

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 95/927 (10%), Positives = 220/927 (23%), Gaps = 100/927 (10%)

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            G  + +       L       ++   R +          ++L +   +   +        
Sbjct: 262  GAALVDYIGLASRLGGTKPTAIAEGFRTVRAIGDPAARYDRLLETFLNGGGKPKADSAFL 321

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
             A     A +L  +I+   +       +  L   +       A    +  ++ +      
Sbjct: 322  NAAMRREAPHLESLIEEARSHLL--ACVDRLSIVRMYEATRAALVLAERLNRDYESLKKA 379

Query: 202  LNASSPVGYQIALMRAEAE--------HLMKGTKGPIIIAGSTGSIPATARLMSTVAN-- 251
             +               A         + +      I++  +  + PA   ++ ++A   
Sbjct: 380  RSQLDFEDLINRTAALLARSDVGAWVHYKLDQGIDHILVDEAQDTSPAQWTIIQSLAADF 439

Query: 252  ------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH----------PQYS 295
                    +   +    D       +     +  +   + T                Q S
Sbjct: 440  FAGDTARADDRTIFAVGDEKQSIYSFQGARPERFSRERTLTERRVRAGNKRFSPIRLQLS 499

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL--PPDTSDMRNTDILENKIPNIQ 353
                +D L         +GN          ++  S     P   D+      E    +  
Sbjct: 500  FRSTVDVLSAVDTVFANIGNARGLSARDEAIVHASNRIGQPGAVDLWEVIAPEPAASDED 559

Query: 354  KCFSDVALIEADNEREEAISIAIAL--------------RMSLDENKKKSALITADRNLA 399
                  A  E       A  IA  L              R ++        +   D  + 
Sbjct: 560  WTAPFDATPERAPVNILARRIAAVLEDWIGKETVIEKGVRRAMRPGDVIVLVRKRDAFVN 619

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
              ++    R  I +  +  + L++ +    L +L   +    D +++A L K PL     
Sbjct: 620  ALMRALKRRGNIPVAGADRLVLTSHIAVQDLIALGRFVLLPEDDLSLAALFKSPLVNLCE 679

Query: 460  PEKYLSRAKN----ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             + +   A+     +L     +         +     L   +T         + +R+   
Sbjct: 680  DDVFELAARRNEGESLWHRLQQAGVEETSRYNATVRKLAAFSTLSRELSPHDFYARILGA 739

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                   L     +    L  + T                     +  + ++        
Sbjct: 740  HGGRRAFLARLGSEVSDILDEFLTFALD-----HERSGLPGLQAFISTLEIEAPTVKREQ 794

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              E +   + ++ +        +          + + +       K +   TL       
Sbjct: 795  DKERDEVRVMTVHAAKGLEAPVVFLVDGGGEAFVRQQVSDLRFLEKPQADQTL------- 847

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
                         L   VW    +    L       L +   E+        +       
Sbjct: 848  -------------LTVPVWRAPGSAPNSLIADDNERLKMLAEEE---YRRLLYVGMTRAA 891

Query: 696  HLIYTRSLRENNIPTIASRWLQR---LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
              +     R           + +      L G       +  G+ +     +  +  +  
Sbjct: 892  DRLIVCGYRGQRQNVDTWHSMVQGTLAQDLMGRATPRLFRAAGEEWQGLAWRETHVPRDL 951

Query: 753  HYKRPK---PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP-------HFKKD 802
                     P       PR    +             +   + +D               
Sbjct: 952  PAADGASGEPEQAKAGLPRALFTAPPPPRRLPRPLAPSGTAIAIDEPDGSSIVGSALFTG 1011

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
             +      L   I+  L++   + +  E     ++ +     +    P  + +       
Sbjct: 1012 KNAPKFSMLRGAILHRLLQVLPSIDAVERTAAAERYLARSVPR---WPEAERLALA---A 1065

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
                 L H E      E     +     + +      ++G  DR+ +     V I DYKT
Sbjct: 1066 TVMDVLGHAELQPLFGEHSRAEVSVMGTLKLGPREFAVSGRIDRLAVSGD-TVTIADYKT 1124

Query: 921  GD--NPKKETAQKLIDPQLSLEAAALK 945
                    E    +   QL++    LK
Sbjct: 1125 NREIPASAEDIAPVYRNQLAIYRELLK 1151


>gi|331674307|ref|ZP_08375067.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA280]
 gi|331068401|gb|EGI39796.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA280]
          Length = 1122

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLEMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|323966803|gb|EGB62234.1| exodeoxyribonuclease V [Escherichia coli M863]
 gi|327251569|gb|EGE63255.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli STEC_7v]
          Length = 1122

 Score =  114 bits (285), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 114/1084 (10%), Positives = 258/1084 (23%), Gaps = 161/1084 (14%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                    L+   AD+ D        W     + +  +           L  A   +T +
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWEIGHLVEGLGEAQAWQAPLWKALVEYTHQ 178

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            L +             +                + I G +   P   + +  +  H    
Sbjct: 179  LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297
            ++      +    I +              ++                            
Sbjct: 238  LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342
             LL        D   L +           +                +             
Sbjct: 298  PLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                +    +    S +      + + E   +   L   L+E+     +   ++ AD + 
Sbjct: 358  FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417

Query: 399  ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                   +         +   IS      +        SLL+          +  L+  P
Sbjct: 418  YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454  LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
            +    F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478  VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537

Query: 505  VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                    S    + +  L  + +    + L+     +        + +W  +    L  
Sbjct: 538  ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
              L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598  FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                + I   +  R + F  + L G+N+GV+P+  A   F   +M          +    
Sbjct: 656  AGP-VNICTLMPMRSIPFRVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 712

Query: 684  AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727
                 E     +  L  +   R   +N     S  +Q L+   G                
Sbjct: 713  RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772

Query: 728  -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
                                  + G+        L   ++          P     P T 
Sbjct: 773  EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827
                +++    P   + +  L+++F     + PD       G   + I  +L+   + ++
Sbjct: 833  PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892

Query: 828  TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
              E      +   D                     +++   +      Q           
Sbjct: 893  DAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 940

Query: 887  AKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
             ++ +   G+ +TG             G              P   +  +    QL LE 
Sbjct: 941  MEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWLEH 984

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
                A                           +  D +       +E++L  L E++   
Sbjct: 985  LVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSELIEGY 1027

Query: 1002 QNGE 1005
            + G 
Sbjct: 1028 REGM 1031


>gi|256821959|ref|YP_003145922.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
 gi|256795498|gb|ACV26154.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
          Length = 1138

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 89/800 (11%), Positives = 202/800 (25%), Gaps = 112/800 (14%)

Query: 177  YGMWWLLAA---DFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKG 225
                W +     + ++IA+ + T               +A  RA             +  
Sbjct: 346  QDDEWEVIESLTELMRIATAHLTIEFKRQGVVDFTEISMAADRALGNIDAPSELALKLDY 405

Query: 226  TKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTI-------- 274
                I++     +     +L+  +       +G  +    D       +           
Sbjct: 406  GISHILVDEFQDTSYGQYQLIEKLTAGWQADDGRTLFVVGDPMQSIYRFREANVGLFIQA 465

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             +             T    S   ++++++    ++    + +          + +    
Sbjct: 466  RDHGIGDIRLEFLQLTSNFRSSETVVNWVNKSFANIFPSYDDAVLGAVSLAEATATKDSS 525

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-DENKKKSALIT 393
            D   +       +   +    +     I  D   +EA  IA  + + L ++ ++  A++ 
Sbjct: 526  DEDKVDFKIFFGDDSNSPGSDYDSEETI-TDAATQEANYIAEQIEVLLKEQPEQDIAVLV 584

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              RN    +   L +  I         L+       + +LL  +   +D +A   L+K P
Sbjct: 585  RARNHGVAIIEALQQRAIAYVAEEFEELAEKQSVLDVLTLLRVLIHPHDKVAWMALLKSP 644

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                   +  L  +    E    R   +   +  L    +  +  Q        WQ    
Sbjct: 645  WFGLTLTDMSLIESVFGDE--VYRVLTDYPAVDGLSLQAVSALEKQGAILEKHRWQLYQQ 702

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                +L  L +                                    L     +  +   
Sbjct: 703  PLAIQLEALWL-------------------------------HLGGALSCQPGEIEQVYT 731

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
             L F    +    +                 +  ++   +      P  E    + I+  
Sbjct: 732  FLDFVSGYEQNQIITD---------------YNPLLLA-MSKLHAPPSREDHCRVSIMTM 775

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPF--LSRVMQSDLNLKTAEKYIGQA------- 684
             +S+ L FDT+ L  LN+G    +     +        S   L      +G++       
Sbjct: 776  HKSKGLEFDTVFLPQLNKGSGNNDKQLMVWEEFPAQDDSSQYLMAPVDQVGESNSLYKFV 835

Query: 685  -------------AHDFEMANGT-RHLIYTRSLRENNIPTIA-----SRWLQRLLVLGGT 725
                            +  +    R L  T     +           S     L+ L   
Sbjct: 836  NDFSRQKNRLESGRLLYVASTRAKRRLFLTCCGAVSYNQKEERLKVGSFGHDSLMNLLRP 895

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
             +   ++               + +   +   +          + SF  IK L+     +
Sbjct: 896  IYETFIESEVLRLELNEEADHSSEQILDHSWQRLKADWSYPKLSDSFKGIKSLLEKNSII 955

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
              +  ++ D+             G L H  +  + K     N   I      + +     
Sbjct: 956  AEQATIEFDWATDV-----AKTIGVLMHRQLELISKGLWQLNQQSIRDYAAAMYEQLLSS 1010

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLTGFA 902
                 +     +    +   + L   +      +  +     +     ++          
Sbjct: 1011 GYNEKNAR-YAQQRIEQGLTNVLNDPKAQWILSAQHQDSACELALTGVVDGEYKAF--VI 1067

Query: 903  DRIDLLKSGFVDITDYKTGD 922
            DR  + + G   I DYKTG 
Sbjct: 1068 DRTFVDEEGTRWIVDYKTGS 1087


>gi|302553994|ref|ZP_07306336.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302471612|gb|EFL34705.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 512

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 54/426 (12%), Positives = 112/426 (26%), Gaps = 37/426 (8%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
           P +     ++ ++              +P     V +   ++RA  ELR    + TG  +
Sbjct: 73  PGTGKTTTLVESVTERI------ARGGDPE---RVLVLTFSRRAAVELRDRMAQRTG--A 121

Query: 73  TILPIIKSLGDVVEEKFTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
              P   +          A  D  L       +S  ++ + +  L+    +        L
Sbjct: 122 ARAPQATTFHSFCYALVRAHQDSDLFVEPMRLLSGPEQDVSVRELLAGQVDLER---LGL 178

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                     +       A  +  ++          + L           W  AA FL  
Sbjct: 179 ANVRWPDELRACLTTRGFADEVRAVLARTRELGLGPDALDDFARRTGRPDWRAAAAFLAE 238

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                  + V   A       +   R EA   +      + +     + PA  RL+  +A
Sbjct: 239 YLDVLDLQGVLDYAELVHRAVLLARRPEAAAWLAARYDAVYVDEYQDTDPAQVRLLHALA 298

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
               G  ++   D       +                 +      +  L          +
Sbjct: 299 G--GGRTLVAFGDPDQSIYTFRGADVNGILDFPHAFPRADGRPAPVKVLRTSRRSGAALL 356

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                ++  M                + +    +  ++     +    V          E
Sbjct: 357 AATRLLTQRMP--------------LTRLPAEKVRAHRELAPVRDGGRVEAYTYPTSGTE 402

Query: 371 AISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTL 425
             +IA  LR +  E+     + + L+ A       V+  LT  G+ +++     PL    
Sbjct: 403 LDNIADILRRAHLEDGVPWSEMAVLVRAGSRTIPTVRRALTAAGVPVEVDGDDVPLRHEP 462

Query: 426 HSSILT 431
             + L 
Sbjct: 463 AVAPLL 468


>gi|146337257|ref|YP_001202305.1| helicase-exonuclease type V family protein AddA subunit
            [Bradyrhizobium sp. ORS278]
 gi|146190063|emb|CAL74055.1| putative helicase-exonuclease type V protein family, addA subunit
            [Bradyrhizobium sp. ORS278]
          Length = 1156

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 89/812 (10%), Positives = 198/812 (24%), Gaps = 76/812 (9%)

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
                 ++ ++   L  +            L   S  W    ++                 
Sbjct: 357  AANYRREKDERGLLDYDDLID---KTLVMLNRVSAGWVHYKLDRGVDH--VLIDEAQDTS 411

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI-TEK 277
                              G+     R +  V +         G D H   A    +    
Sbjct: 412  PRQWDIVAHIIEEFTSGAGARDGLTRTIFAVGDEKQSIFSFQGADPHEFDARRRQLQKRF 471

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR--LGNVSNEMYGRSMVISKSFLPPD 335
            +      +    T+   S   +L  +D    + +     +  +  Y     ++ +     
Sbjct: 472  TDAGLLFDPVSFTYSFRSGPTVLHAVDHVFREREVYSSIHSPDIGYPIHNALTDAGPSLV 531

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEAD---NEREEAISIAIALR----------MSL 382
                        +I   +  F  V++   +   + R +A  I   +R             
Sbjct: 532  ELWSLCERDDRKEIEGWRAPFDGVSVTSPEVKLSRRIQAE-IKRLIRVGTMTGHDGARRR 590

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                    L+         V   L   GI +  +  + L+  +    L +L +A+    D
Sbjct: 591  LSYGDMLILVRRRGTAFDAVIQALKHAGIPVAGADRLKLTEHIAIIDLMNLADALLLPQD 650

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNA--LELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             +A+AT +K PL      + +    +    L         +   +  +   +        
Sbjct: 651  DLALATALKSPLFGLDDDDLFKLAWQRRGSLREALSAHAADDPRLQAVVRRLQQCERRAA 710

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
             +T    + + L   D     +L     +    L  +     S       S         
Sbjct: 711  EDT-PFAFYAWLLGGDGGRRRILARLGHEANDALDEFLELALSYERKAPAS--------- 760

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                      +    W       +        +    +  +  + ++     +   T  P
Sbjct: 761  ---------LQGFVAWLRAADTEVKRDMEISRDEVRVMTVHGAKGLEASVVFLVDTTSSP 811

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
                      L  +     + + ++  G                 + + +       E  
Sbjct: 812  ADS-----QRLRLIHVPHGDREIVVWAGRKADD-----------PQAVVAARAAMLKETE 855

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF-----FDNLKKRG 735
                   +         +        N+  +       L+  G             +   
Sbjct: 856  DEYRRLLYVAMTRAADRLVIGGCMPGNMNNVRGGSWYDLMARGLDAAGLQVEVIETEDGP 915

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                     +  T K    +  +    L A  RT +      +     +  +     +  
Sbjct: 916  VKRYARPEDIAETAKDEARQMAESAVELPAWLRTAAVEAPGDVAVLRPSDPSSDERPVRT 975

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                        RGTL H ++  L      +        + +      E E       ++
Sbjct: 976  GESLAARSLAMQRGTLVHRLLQSLPDVPPERRRDAALRYLLRNAPDWPEDERDKLTARVL 1035

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL-TGFADRIDLLKSGFVD 914
                  + +  F        +   +  V+I  ++A       L +G  DR+ + ++  V 
Sbjct: 1036 TVIADPRFAAVF--------APGSRAEVSIVGRLAHPGQPRTLVSGQIDRLVVTEA-EVL 1086

Query: 915  ITDYKTGDNPKK--ETAQKLIDPQLSLEAAAL 944
            I D+KT   P        +    QL+L  A L
Sbjct: 1087 IVDFKTNQQPPSELADVPEAYLRQLALYRAVL 1118


>gi|320667105|gb|EFX34068.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. LSU-61]
          Length = 1122

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLEFATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
              + L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NALFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|148251712|ref|YP_001236297.1| DNA helicase/exodeoxyribonuclease V subunit A [Bradyrhizobium sp.
            BTAi1]
 gi|146403885|gb|ABQ32391.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bradyrhizobium sp.
            BTAi1]
          Length = 1156

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 95/810 (11%), Positives = 201/810 (24%), Gaps = 72/810 (8%)

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
                 ++ E+   L  +            L   S  W    ++                 
Sbjct: 357  AANYRREKEERGLLDYDDLID---KTLVMLNRVSAGWVHYKLDRGVDH--VLIDEAQDTS 411

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI-TEK 277
                              G+     R +  V +         G D H   A    +    
Sbjct: 412  PRQWDIVAHIIEEFTAGAGAREGLTRTIFAVGDEKQSIFSFQGADPHEFDARRRQLQKRF 471

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR--LGNVSNEMYGRSMVISKSFLPPD 335
            +      +    T+   S   +L  +D    + +     +  +  Y     ++ +     
Sbjct: 472  TDAGLLFDPVSFTYSFRSGPTVLHAVDHVFREREVYSSIHSPDIGYPVHNSLTDAGPSLV 531

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALI--EADNEREEAISIAIALR----------MSLD 383
                        +I   +  F  V++   E    R     I   +R              
Sbjct: 532  ELWSLCERDDRKEIEGWRAPFDGVSVTSPEVKLARRIQAEIKRLIRAGTMTGHDGARRRL 591

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                   L+         V   L   GI +  +  + L+  +    L +L +A+    D 
Sbjct: 592  SYGDMLILVRRRGTAFDAVIQALKHAGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDD 651

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            +A+A  +K PL      + +    +                   L+  +  + A      
Sbjct: 652  LALAIALKSPLFGLDDDDLFKLAWQRR---------------GSLRDALTAQAADDPRLQ 696

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
             V     +      E         L            +     N ++ ++ +L ++  + 
Sbjct: 697  AVLRRLQQCERRAAEDTPFAFYAWLLGGDGGRRRILARLGHEANDALDEFLELALSYERK 756

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                    +   W       +        +    +  +  + ++     +   T  P   
Sbjct: 757  APASLQGFVA--WLRAADTEVKRDMEISRDEIRVMTVHGAKGLEASVVFLVDTTSSPADS 814

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
            +   L       S       +  G  ++   P  TA+   L             E     
Sbjct: 815  QRLRLI----HVSHGDQEIVVWAGRKSDDPQPVATARAAML------------KETEDEY 858

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF---FDNLKKRGQCYLD 740
                +         +        N+  I       L+  G        + ++        
Sbjct: 859  RRLLYVAMTRAADRLVIGGCMPGNMTNIRGGSWYDLMARGLDAAGLQVEVIETEDGPIKR 918

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF---SEIKQLINDPYAVYARRILKLDFIP 797
            + R  D         R     P+E      +    +  +  +  P    A     +    
Sbjct: 919  YARAEDIAETAKDEARRMVEMPVELPAWLRTVAAETPGEVAVLRPSDPSADER-PVRSGE 977

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                      RGTL H ++  L +    +        + +      E++       ++  
Sbjct: 978  SLAARSLAMQRGTLVHRLLQSLPEVLPERRRDAALRYLLRNAADWPEEQRTGLAERVLAV 1037

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL-TGFADRIDLLKSGFVDIT 916
                + +  F        +   +  V+I  ++A+      L +G  DR+ +  S  V I 
Sbjct: 1038 IQDPRFAAVF--------APGSRAEVSIVGRLALPGQPRALVSGQIDRLVVTGS-EVLIV 1088

Query: 917  DYKTGDNPKK--ETAQKLIDPQLSLEAAAL 944
            D+KT   P             QL+L  A L
Sbjct: 1089 DFKTNQQPPSDLAEVPPAYVRQLALYRAVL 1118


>gi|194014992|ref|ZP_03053609.1| recombination helicase AddA [Bacillus pumilus ATCC 7061]
 gi|194014018|gb|EDW23583.1| recombination helicase AddA [Bacillus pumilus ATCC 7061]
          Length = 1232

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 123/1038 (11%), Positives = 277/1038 (26%), Gaps = 154/1038 (14%)

Query: 27   NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86
              T VE   + P     L+ V       R+ QEL    + ++ +     P          
Sbjct: 209  AQTKVEELPFYPYIKEDLSLVL------RSCQELLERALSLSKEPGGPAPRA-------- 254

Query: 87   EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL--------PDIIKDLYPESPLSL 138
            E F  DL     L     + ++L EL   +   R K           + K     +    
Sbjct: 255  ENFIDDLEQVNELIRHQDDFEKLYELLPNVNFKRLKTCKGDEYDPALLEKSTDARNQAKK 314

Query: 139  PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD----FLKIASKY 194
             +      +  ++ A  +  +   +   E L  L  +    +     +           Y
Sbjct: 315  QLEKLKDEYFMRSPAQHLKSLAEMKPVVETLVELVIQFGERFERAKQEKSIVDFSDLEHY 374

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
                L E +A         L+  EA    +     +++     +      ++  V+   +
Sbjct: 375  CLRILAEQDAEG------HLIETEAAKYYQQQFEEVLVDEYQDTNLVQETILKLVSKGKH 428

Query: 255  GAI--VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
             A   +    D       +                   H Q    +    +D+ +    R
Sbjct: 429  SAEGNLFMVGDVKQSIYRFRLAEPMLFLNKYK------HFQPDGKETGKRIDLNKNFRSR 482

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD------- 365
               + +  +    ++ ++       D +    L    P  +   +++ L+  D       
Sbjct: 483  SDVLDSTNFLFKQLMGETV-GEIEYDEQAELKLGASYPESKDTTTEMLLVHLDQQEAETG 541

Query: 366  -------NEREEAISIAIALRMSLDE---------------NKKKSALITADRNLARRVK 403
                     + EA  IA  ++  +++                 +   ++      A ++ 
Sbjct: 542  EEREELETVQFEARIIAKKIKELVEQPFQVYDAKQQMTRNLQYRDIVILLRSMPWAPQMM 601

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
             EL + GI +  +           S++ SLL  I      + +A +++ P+      E  
Sbjct: 602  EELKKQGIPVYANLSSGYFEATEVSVILSLLKVIDNPYQDIPLAAVLRSPIVHLDENELA 661

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
            L R  +                                   +  W+           +  
Sbjct: 662  LIRTSDKKGTYYDAVKAFMSVTHSDHPTCKKLERFF---QLLRKWRDFSINHSVAELIWE 718

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
            V    Q +  +      K       ++ D  K              R +  +    +   
Sbjct: 719  VYRDTQYLDYVGGMPGGKQRQANLRALYDRAKQYEKAAFRGLFRFLRFIERMQERGDDLG 778

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--------------------------- 616
             +  FS+  +    +  ++ + ++       G                            
Sbjct: 779  AAKTFSETEDVVRMMTIHSSKGLEFPVVFTAGLGRNFNMMDLNQSYLLDKELGFGSKYIH 838

Query: 617  -TVKPKIEKSSTLFILGTLESRLL----NFDTLILGGLNEGVW------PKNTAKNPFLS 665
              ++        + +   + + LL        + L    E ++       +  A + + +
Sbjct: 839  PELRISYATLPLVAMKKKMRTELLSEELRVLYVALTRAKEKLFLVGSVKNQVKALSKWQN 898

Query: 666  RVMQSDLNLKTAEKYIGQAAHDF-------EMANGT-----RHLIYTRSLRENNIPTIAS 713
                 +  L   E+Y  +   DF         A  +       ++ +         T AS
Sbjct: 899  AATGEEWLLPDFERYQSKTYLDFIGPALIRHQAMSSVLEETGDIVLSHPSTFTISFTQAS 958

Query: 714  RWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
              L+  + L     D        G     +    +   ++  +K P          ++ S
Sbjct: 959  DLLKEDMSLEKKEQDEIVQALIDGLPVEGYGDADEKVAERLSWKYPYLAASQVGTKQSVS 1018

Query: 772  FSEIKQLINDPYAVY-----ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
              +  + I D Y+V      AR  L        KK     ++GT  H ++  +       
Sbjct: 1019 EIKRMKEIQDEYSVPSSIRKARATLYDRPAFMKKKTLTAAEQGTAMHTVMQHIPLPSEEP 1078

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                    + + +            I  I +     I+  F     +     + +   + 
Sbjct: 1079 YDESRIGHLLESLQQ--RDLLTDEQIQSINQ---EGIAAFFSTSIGQKLLKADWVKREVS 1133

Query: 887  AKMAIE-----------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL--- 932
              + +               + + G  D +     G + + DYKT     + T       
Sbjct: 1134 FSLVLPVKEVYSHIDTEGEPVLIQGMIDCLFET-DGKLYLLDYKTDRVQGRYTVDAAEPI 1192

Query: 933  ----IDPQLSLEAAALKA 946
                 + Q++L A A++ 
Sbjct: 1193 LKKRYETQIALYAKAVER 1210


>gi|309785132|ref|ZP_07679763.1| exodeoxyribonuclease V, gamma subunit [Shigella dysenteriae 1617]
 gi|308926252|gb|EFP71728.1| exodeoxyribonuclease V, gamma subunit [Shigella dysenteriae 1617]
          Length = 1111

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 114/1081 (10%), Positives = 258/1081 (23%), Gaps = 159/1081 (14%)

Query: 22   IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
            + AL+   +      DP  P       I V +    Q L+    +  G  + I      L
Sbjct: 2    LEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---FPL 53

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                       +L         +      +L  L+    ++    +        L+    
Sbjct: 54   PASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDDSD 109

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWTER 198
                  L+   AD+ D        W  L   +                 L  A   +T  
Sbjct: 110  KRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYTHE 167

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            L +             +                + I G +   P   + +  +  H    
Sbjct: 168  LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 226

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297
            ++      +    I +              ++                            
Sbjct: 227  LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 286

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342
             LL        D   L +           +                +             
Sbjct: 287  PLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 346

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                +    +    S +      + + E   +   L   L+E+     +   ++ AD + 
Sbjct: 347  FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 406

Query: 399  ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                   +         +   IS      +        SLL+          +  L+  P
Sbjct: 407  YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 466

Query: 454  LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
            +    F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 467  VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 526

Query: 505  VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                    S    + +  L  + +    + L+     +        + +W  +    L  
Sbjct: 527  ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 586

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
              L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 587  FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 644

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                + I   +  R + F  + L G+N+GV+P+  A   F   +M          +    
Sbjct: 645  AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 701

Query: 684  AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727
                 E     +  L  +   R   +N     S  +Q L+   G                
Sbjct: 702  RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 761

Query: 728  -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
                                  + G+        L   ++          P     P T 
Sbjct: 762  EARVKAHLTFLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 821

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827
                +++    P   + +  L+++F     + PD       G   + I  +L+   + ++
Sbjct: 822  PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 881

Query: 828  TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
              E      +   D                     +++   +      Q           
Sbjct: 882  DAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 929

Query: 887  AKMAIESIGIHLTGFADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
             ++ +   G+ +TG+   + +   G              P   +  +    QL LE    
Sbjct: 930  MEIDLACNGVQVTGWL--LQVQPDGLLRWR---------PSLLSVAQG--MQLWLEHLVY 976

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004
             A                           +  D +       +E++L  L +++   + G
Sbjct: 977  CASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREG 1019

Query: 1005 E 1005
             
Sbjct: 1020 M 1020


>gi|283786522|ref|YP_003366387.1| exodeoxyribonuclease V gamma subunit [Citrobacter rodentium ICC168]
 gi|282949976|emb|CBG89604.1| exodeoxyribonuclease V gamma subunit [Citrobacter rodentium ICC168]
          Length = 1123

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 122/1086 (11%), Positives = 277/1086 (25%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANI--EFP 63

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
                 + + F   L       P  S   +     +L+ +    L      L     L+  
Sbjct: 64   LPASFIWDMFVRVLPGI----PKESAFNKQSMSWKLMTLLPELLGHDDFTLL-RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                    L+   AD+ D       +W          +           L  A   +T+R
Sbjct: 119  TDKRKLFQLSSRAADLFDQYLVFRPEWLTQWEAGRRVEGLGEAQRWQAPLWKALVEYTDR 178

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            L +             ++               + I G +   P   + +  +  H +  
Sbjct: 179  LGQPRW-HRASLYQRFIQTLENANTCPPGLPSRVFICGISALPPVYLQALQALGKHIDIH 237

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
            ++      +    I +              ++                            
Sbjct: 238  LLFTNPCRYYWGDIKDPAYLAKLLARQRRHSFEDRHLPLFRDGASAGSLFNSDGEQDVGN 297

Query: 299  --LLDFLDIKREDVKRLGN--------------VSNEMYGRSMVISKSFLPPDTSDMRNT 342
              L  +  + R+ +  L                  N ++     I +             
Sbjct: 298  PMLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHNIQADILELENHAVAGVSLEE 357

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                +    +    + V      + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358  YSRSDSKRRLDPDDTSVTFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399  ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                   +         +   IS      +        SLL+          +  L+  P
Sbjct: 418  YSPFIQAVFGSAPPERHLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            +    F           L +    G +   D  +++ L L           +       +
Sbjct: 478  VLAARFNISEEGLRYLRLWVNES-GIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYA 536

Query: 514  EEDK-----------ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
             E             E + L+ + +    + L+     +        +++W  +    L 
Sbjct: 537  MESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLSQERPLAEWLPVCREMLN 596

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
            +  L +   +         +   ++ ++ +              D + + +D E +  + 
Sbjct: 597  DFFLPDSETVAA--MTLIEQQWQAIVAEGLGAEYGDAVPLSLLRDELAQRLDQERISQRF 654

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                 + I   +  R + F  + L G+N+GV+P+      F    ++     ++      
Sbjct: 655  LAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQMPPLGFDLMSLKPMRGDRSRRDDDR 713

Query: 683  QAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF----------- 728
                  E     +  L  +   R   +N     S  +Q LL   G   +           
Sbjct: 714  Y--LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELLDYIGQSHYLPGDEALTCDE 771

Query: 729  -------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPRT 769
                           +    + +L   R+   +   P   R          P     P T
Sbjct: 772  SEERVKAHVTCIHTRMPFDSENFLPGERQSYASEWLPAASRSGEAHSDFVQPLAFEMPET 831

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
             S   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832  LSLETLQRFWAHPVRAFFQMRLRVNFRSEESEIPDTEPFTLEGLTRYQLNQQLLNALVEE 891

Query: 827  NTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
               E      +   D              I     H+   +  +     +          
Sbjct: 892  GDAERLFRRFRAAGD------LPYGAFGEILWETQHQEMQTLADKIIACRQPS------Q 939

Query: 886  PAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLE 940
              ++ +   G+ LTG           + G              P   +  +    QL LE
Sbjct: 940  SMEIDLHCHGVQLTGWLPQV-----QEDGLLRWR---------PSLISVSQG--LQLWLE 983

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL-SEKSLKNLIEIVT 999
                              +L Y       +         ++    L + ++L  L +++ 
Sbjct: 984  ------------------HLVYCACGGTGESRLFLRKDGEWRFPPLEAAQALDYLAQLID 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|206890547|ref|YP_002248959.1| hypothetical protein THEYE_A1135 [Thermodesulfovibrio yellowstonii
            DSM 11347]
 gi|206742485|gb|ACI21542.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii DSM
            11347]
          Length = 923

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 96/713 (13%), Positives = 212/713 (29%), Gaps = 81/713 (11%)

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELT-RFGINID 414
            F  + L    +   E   +   +  +   ++K   ++     L   ++  +T     + +
Sbjct: 242  FDKINLYSCPDTHAEVKVVGHLI-ENFPIDEKTVIVLPKSDTLFPLLRQGITFLKDEDYN 300

Query: 415  ISAGIPLSTTLHSSILTSLLNAIF----KLNDFMAIATLVKHPLAKFGFPEKYL-SRAKN 469
            IS G PLS T       +L  A+           A    V HP  K    +         
Sbjct: 301  ISMGYPLSRTPIYGFFNNLFEAVNSMENNQIYVPAYFKFVLHPYTKNVLVKNSAELSRII 360

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
              ++  L  ++     ++L+ L  +       N    +      +E  +L          
Sbjct: 361  FHQIEDLFRSEEIPPFVELEWLEKEVPEIISANLKDFNLTVDDIKEHIKLIHNNTIKKFI 420

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             I  +  +  N              + T      +           + +    T+ S   
Sbjct: 421  IIRNIEEFINNCKDVLLF-----IYEKTTARFHYLFYPYVEFFIAQFEKIANSTIKSFQF 475

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            + IE+          + +    L+  E V         L ILG LE+R + F  +I   L
Sbjct: 476  EHIES----------YFNFFKNLVIFENVPFHGTPLKGLQILGFLETRNIKFKKVIFLDL 525

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNI 708
            NEGV+  + +++  L   ++  ++L   +       + F +       +       +   
Sbjct: 526  NEGVF-PDLSEDYLLPYSVRKIIDLPVYQDREKLIYYYFSLLVNNAEEVHLCYIKND--- 581

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                SR++++++        + L    +             +     + +    +     
Sbjct: 582  KNERSRFIEKIIWEIEKSVSEKLNIPIKSISWSVNL--AAKRPSEIYKTEQIMTIINSLC 639

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S I   ++     Y   ILKL        + + +D G + H  + +  K R  K  
Sbjct: 640  -LSPSAIDVYLDCGLKFYYFYILKLIKKKDISTEIEHSDIGIIVHESLKQYFKLRKGKKL 698

Query: 829  P--EINHLMKQIIDSHFEKENLP------PHIDIIWRHLFHKISHSFLEHEEKIQ----- 875
               +  + ++ I++  F K+           I         ++   + +  ++ Q     
Sbjct: 699  HPGDFGNDIELIVNDIFLKKYGSKITGNLYLIKFQILQRLSELIEYYRKMAKEHQLKILE 758

Query: 876  --SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK--SGFVDITDYKTGDNP------- 924
                IE+   +   K               RIDL++     + I DYKT  N        
Sbjct: 759  VEELIEESLFDTSFKY--------------RIDLVENIDSSIIIVDYKTSGNENNYKIKF 804

Query: 925  -----KKETAQKLI--DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
                     +        Q+ +            I+   +   +++ L +    D     
Sbjct: 805  DKLDISDRQSWSKYIGSLQIPIYMLLYSRK--YSINPLNLKGHYFL-LGKSLINDEKVRF 861

Query: 978  KK--KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                +   +E  +     L  ++  +++   PF       +      ++  + 
Sbjct: 862  DPFTQIDQEEGIKIVSIILQTLLNEIKDKNTPFEPTSD-FKNKCKFCDFQPIC 913



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 60/208 (28%), Gaps = 21/208 (10%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            +  P KR    L+    +     S I P+I S  + V   F                  
Sbjct: 39  LVVFPGKRPSYYLKKALAQRLNH-SFIPPLIFSADEFVNFLF------------------ 79

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
           + +  A  I             L  +   +      N I     L ++ + +  E     
Sbjct: 80  KKISNACFIEAVEAVGIIYEICLRHDLLTTFFRKFDNFISFGFKLFNLFEELYIEGISIH 139

Query: 168 DLHALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
            L  ++              FL I  + + + L++ N  +       L  ++ +      
Sbjct: 140 QLKEVETLIDIPAKSQEKLRFLSIVYEDFYKELIDRNLCTRALRYRKLADSD-DLESYLK 198

Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPN 254
              +I AG      +  +++  +A   N
Sbjct: 199 FNNLIYAGFFAFTASEKKILQKLATLKN 226


>gi|83942010|ref|ZP_00954472.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
            sp. EE-36]
 gi|83847830|gb|EAP85705.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
            sp. EE-36]
          Length = 1125

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 92/846 (10%), Positives = 222/846 (26%), Gaps = 110/846 (13%)

Query: 145  AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
               L   + D++  +E        L A +          A  FL+I +    ++   L+ 
Sbjct: 302  LFDLMPQVDDLMRRVEDARDARLALRAAQKTHVLH--QFAHRFLEIYAHE-KQKRGWLDF 358

Query: 205  SSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA--------- 250
               +    AL+      A   + + G    I++  +  + P    ++  +A         
Sbjct: 359  DDLILKARALLTNPAVAAWVLYRIDGGIDHILVDEAQDTSPRQWDVIERLADEFYSGDGA 418

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY--STHPQYSLAKLLDFLDIKRE 308
                   +    D       +     +  +          S   Q    + L++      
Sbjct: 419  REEEDRTLFVVGDKKQSIYSFQGADPREFDHKQDLFEQKISQAGQIFQRRSLEYSFRSSS 478

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR-----NTDILENKIPNIQKCFSDVALIE 363
             +  L + +   +  +   + +      S +         + +   P+ ++    V    
Sbjct: 479  AILHLVDTTLAPHTDAGFQADAAHKAFKSALPGRVDLWPVVEKTDEPDDREWSDPVDQKS 538

Query: 364  ADNERE-EAISIAIALRMSLD--------------------ENKKKSALITADRNLARRV 402
            A +     A  +A  ++  ++                           L+    +L   +
Sbjct: 539  AHHHTVVLADQVASQIKELIEGEHYLPVDTDTPGAFARRRIRAGDFLILVQRRSDLFSEI 598

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                   G+ I  +  + +   L    L +LL+ +    D +++AT +K PL  +     
Sbjct: 599  IRACKTAGVPIAGADRLKVGAELAVKDLAALLSFLATPEDSLSLATALKSPLFGWTEQML 658

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
            +        + +       S D       +L  +  Q +         R+         L
Sbjct: 659  FTLSHYRKEDHLWQALR--SSDAYPETVAILRDLRAQVDFLRPYDLIERILTRHDGRRKL 716

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            L     +    +    +   S                               +W + +  
Sbjct: 717  LARLGSEAEDGINAMLSQALSYER------------------GAIPSLTGFLVWMQTDDL 758

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             +        +    +  +  + ++    ++     +P + +   + I  T   +L   D
Sbjct: 759  EIKRQIDNASDQVRVMTVHGAKGLEAPIVILPDTGKRPLVIRDEIIKIGDTPVWKLSEGD 818

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
                                 +   M+  L+ + A +   +    +         +   +
Sbjct: 819  ---------------------MPAAMRGALDDRKAREMAERLRLLYVAMTRAEKWLIVAA 857

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
                 +P   + W Q +    G      +   G    +              K       
Sbjct: 858  A--GELPKDGNSWYQMVGAAMGQAGAKPVGSSGGMRFEHGDWDALPVIDSAPKTHTTPEL 915

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
                    +   ++     P  +   + L        + +      G L H ++  L   
Sbjct: 916  DPVFNTALTVIPLRAKTLAPSDLGGAKAL---PGDDGQSEDAAKSYGNLVHKMLETLPMM 972

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
              ++    + H + Q  D    +  L   I ++       +               +   
Sbjct: 973  HSDRWNG-VLHTLAQGYDETVAQAALREAIAVLDTPELAHV-------------FGKDAL 1018

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLE 940
              +P    +      L G  DR+ L+    V + DYKT        +   + +  Q+   
Sbjct: 1019 AEVPITAPLGPK--RLHGTIDRL-LVSDTDVLLVDYKTNRVVPDTPDRCPEGLLRQMGAY 1075

Query: 941  AAALKA 946
            AAAL  
Sbjct: 1076 AAALAQ 1081


>gi|306812274|ref|ZP_07446472.1| exonuclease V subunit gamma [Escherichia coli NC101]
 gi|305854312|gb|EFM54750.1| exonuclease V subunit gamma [Escherichia coli NC101]
          Length = 1122

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 111/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            + L +             +                + I G +   P   + +  +  H  
Sbjct: 177  DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728
                   E     +  L  +   R   +N     S  +Q L+   G   +          
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 729  ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS--- 773
                         + +            L    ++      +         +   F+   
Sbjct: 771  ESEARVKAHLTCHHTRMPFDPQNYQPGNLQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 774  -----EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
                  +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|239990573|ref|ZP_04711237.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
            11379]
          Length = 287

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 74/262 (28%), Gaps = 19/262 (7%)

Query: 752  PHYKRPKPFPPLEAQPRTYSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                R         Q  + S S + QL N      +  R      +            G 
Sbjct: 6    EEPTRSAVPLRDRDQALSLSPSALDQLANTCTLQWFLGR-----EVKADAPATAAQGFGN 60

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
            + H ++ + +         ++       + +    +          +         FL  
Sbjct: 61   VVH-VLADEVASGRTPADLDVLMERLDSVWNGLAFDAPWKSEQEKDQAR--AALERFLHW 117

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKE 927
                +             + +E+    + + G  DR++    G   + D+KTG   P K+
Sbjct: 118  HVLDRGGRTPTASEHDFDVTLEAGEYAVRIRGSMDRVEEDAEGRAYVVDFKTGKGAPTKD 177

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSAD 984
                   PQL++   A++ G+  ++      +      ++L+Q        +   K  A 
Sbjct: 178  EVAAH--PQLAVYQLAVREGAVDEVFDGRRPEPGGAELVQLRQPAPKKEGGDAFPKVQAQ 235

Query: 985  ELSEKSL--KNLIEIVTLLQNG 1004
            E          L      + + 
Sbjct: 236  EPLAGEWVSDLLATAAKKVLDE 257


>gi|325182777|emb|CCA17232.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 977

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 105/946 (11%), Positives = 236/946 (24%), Gaps = 119/946 (12%)

Query: 105  NIQRLLELAR-LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
             + + L  +  L  +    L             S P +    ++ + +L  +++      
Sbjct: 116  GLDKRLVDSNTLYALLMQNLERFPMKRLHSGLTSSPFTLKREVYDSLSLFQMLESA---G 172

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS----PVGYQIALMRAEA 219
               E+  A   E                 K + + L   N SS     +     L     
Sbjct: 173  IFPEEYQAYAEESCHKSEQEHHLEYAEGYKLYRQILESKNLSSWSGIILDGLSLLRSQNN 232

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                      I+I       PA+ ++++ +   PN                         
Sbjct: 233  VSSFLSGYSDIVIDELEEMNPASIKILAALIQQPN-----------------------IQ 269

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +  +       H ++    LLD L    E       +      RS            +  
Sbjct: 270  STMAFCHGSLDH-RHRNDLLLDRLVANSEVFINQHILE--KNVRSEFSRCI---ASETAC 323

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN-KKKSALITADRNL 398
              +  +        +   +   +E D+  EE + +A +++  L         +  +    
Sbjct: 324  LLSKKISKSGHKPLEKLENFKCLEFDSIGEEELYVAQSIKHKLTFCEPADIVVACSTIAD 383

Query: 399  ARRVKLELTRFGINIDISAGIP-----LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              R++L      + I  S         L      S + S+L  +   +D  ++  +++  
Sbjct: 384  IARIELICEDMSLPIIRSTLRSDKNGYLLHQPGVSQVFSMLQVLAAPSDTHSLYDVLRSN 443

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                 +                +L  I    ++    +  +   
Sbjct: 444  SFDVSPELFSQLLTNAHKMHKS----------------LLTVIREHVSDPETGNLTT--- 484

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                         +++ +  L T +   +       +    +        V         
Sbjct: 485  ----------AQPLVKLVRMLDTLQPLSHQEPTTKVVHQIVRELGLYEALVTPTCPEDEE 534

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
              +          L    +E    +         +              ++   +  L  
Sbjct: 535  MAFTFANFLRAIELAENCVE-SPFLSFVVPYLRHLGETRQSDIDGSETNDQYLRVLHLPK 593

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF----E 689
                 L    L    +++  +P    +          +  + +  +        +     
Sbjct: 594  ASVSELQSKHLYFVAMSDRKYPGRIRRLGIAPPADLLEDVMHSQTRSKFLEERQYTMYNA 653

Query: 690  MANGTRHLIYTRSLRENNIPTI--ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
            +      +  + +   +N P     SR L+ +     +                    + 
Sbjct: 654  LCMAADSITISFAQNVSNSPEREKPSRILEPIWPSSSSQLPTKPPANSDP-----ETFET 708

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
            TT                Q    SFS+I +    P+  +  R+LKL        D     
Sbjct: 709  TTPPKPL-----DFKPSYQLDHLSFSQIAEYQRCPHRYFLHRVLKLS-----TDDNPALI 758

Query: 808  RGTLFHNIITELIKKRIN-------KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
             G   H  I                         +  +  S  E          +     
Sbjct: 759  YGRALHESIAAFANHLRENPSTTDSARKEAEQSAVAALTRSWVEGSFASATQATLLLQQA 818

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
            +     F+ H     +  E + V  P    +E + ++  G  DRID  +   + I +YK+
Sbjct: 819  NSDLDQFIGHHY--NNPTEILHVEAPFTFQVEEVDVNFRGIWDRIDRNEKNEIVIKEYKS 876

Query: 921  GDNPKKETAQ--KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
              + +            QL L   A +               FY  L    ++  I    
Sbjct: 877  NVSRRSRNVALMAKKSLQLQLYVFAYQR--------------FYKSLPDSVELSIIGTKD 922

Query: 979  KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
            +   A    +++ K++I+++    +  +        S    +   Y
Sbjct: 923  RALLAVTKDDENEKDMIKLIKETADQIRKHKFQPTPSFGECMMCPY 968


>gi|300712679|ref|YP_003738492.1| nuclease subunit B-like protein [Halalkalicoccus jeotgali B3]
 gi|299126363|gb|ADJ16701.1| nuclease subunit B-like protein [Halalkalicoccus jeotgali B3]
          Length = 1060

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 96/992 (9%), Positives = 236/992 (23%), Gaps = 186/992 (18%)

Query: 111 ELARLILIWRNKLPDIIKDLY----------PESPLSLPISPANAIWLAKNLADIIDIIE 160
           EL+ ++    ++L   I ++             +  S    P         L   ++   
Sbjct: 63  ELSDVVRRAHDRLIAPIPEVDTLDRQRIIEQAVADSSHFEKPRQYTNFVSELIRALEEAG 122

Query: 161 TEEKKWEDLH-ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
            +    + +  AL         +     +      + + +    A        +L     
Sbjct: 123 YQ--TPDAITTALSTTDLPSERIDVISEIVDRYSTYRDLIAHPAAQPRSQLYESLANTSG 180

Query: 220 EHLMKGTK-GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                      II++G T   P    +++ +A      I+LP                  
Sbjct: 181 SLTTAFPSVETIILSGYTDPAPVEVAVINRLAEEFPLTILLPT--------------TNG 226

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +T  +        +  + L+    +     + +      S + + +        
Sbjct: 227 NTADPIDTDGADRHLARTHEAYEPLEYT-TEYVPSTDQTQLQTAVSRMYTHA-------- 277

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALIT 393
                               V+   A     E   +A  LR  L +  +        L  
Sbjct: 278 ---------ASTEPPVETDTVSWHTAPTPDREVRHLARRLREQLADPTRPSPDETRILAP 328

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  ++      +GI    S  I L  T     +   +    +      +  L  +P
Sbjct: 329 GLLTYRDQISDIFAEYGIEYTTSLSILLEQTYAGRAIQDAIALCIE-ETSEPLTRLATNP 387

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
           +      +     A         R      + +  +S         +    V   QS   
Sbjct: 388 VVSLSDIDTAALVALER------RYRPCDLETLKGRSRSKWLTTLTQIQQSVTRAQSNDG 441

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                    LV+ +                                 L+    +    + 
Sbjct: 442 TAAIHGIANLVETLK--------------------------------LETNVENLPEDVE 469

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILG 632
             +          +   ++      + +  + +  I +  +G  V    +  +  + I+G
Sbjct: 470 GGYERRAISRAKRILQSLLRICEHDELDIDDPLTEIEQAFEGVRVPAPKQHHANRVRIIG 529

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF-EMA 691
             ++ + + + L + G  E   P + ++  +  + +     +  A+++   A + F  + 
Sbjct: 530 LEDTLMADCEALYVLGATEENLPGHQSRPRYF-QQIADAAGVLPADRHQELARYRFGAIV 588

Query: 692 NGTRHLIYTRSLRE-NNIPTIASRWLQRLLVLGG-------------------------- 724
           +    +  T      +    + S  ++ L                               
Sbjct: 589 SNADSVHITTPKETMDGEQILPSALVEELDRTATVTQTSGLADERRGSCEDVQRALAGSP 648

Query: 725 ------------------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                                 ++ +   +C  +                          
Sbjct: 649 PDKLEELLNGPSATETFTPAQIESSRAGAECASNRATPGPSVHDGRLPTESLDEVGDRLT 708

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
            + YS S +       +  Y R   +L+       D  R   G + H  +     +   +
Sbjct: 709 KQPYSPSRLNTYAQCGFKYYLRNGFELEEPDEESADTGRFAIGDVVHETLERFYTELAKE 768

Query: 827 ----------NTPEINHLMKQIIDSHFE--KENLPPHIDIIWRHLF-------------- 860
                     +  ++   +            E+     D                     
Sbjct: 769 TTGGVDLTEYDETDLRQRLYAAGKEAVADSDESFSSPFDRQQLAALFTGIVPPEDNRFFL 828

Query: 861 ---------HKISHSFLEHEEKIQSSIEKIFVNIPAKMAI------ESIGIHLTGFADRI 905
                      +   FL  E +     +  F               +   + ++G  DRI
Sbjct: 829 GTDEGDEESTGLLVEFLRRE-QRDGDWQPRFFEQWFDGEAGPIQTPDGTELPVSGLIDRI 887

Query: 906 DLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFY 962
           DL         + DYKT          + ID QL       +    +++    +     Y
Sbjct: 888 DLDTETPAAARVLDYKTYKA-DTNDVIRGIDFQLLAYTFGAERFLETELGDPHQRVEAGY 946

Query: 963 --IRLKQKFKIDCITNDKKKYSADELSEKSLK 992
             ++               + + +  +++ L+
Sbjct: 947 RIVKPPTTITHKQSLPKTIESNLEIPADQFLQ 978


>gi|291284148|ref|YP_003500966.1| Exodeoxyribonuclease V, gamma subunit [Escherichia coli O55:H7 str.
            CB9615]
 gi|209761104|gb|ACI78864.1| DNA helicase RecC [Escherichia coli]
 gi|290764021|gb|ADD57982.1| Exodeoxyribonuclease V, gamma subunit [Escherichia coli O55:H7 str.
            CB9615]
 gi|320662031|gb|EFX29432.1| exonuclease V subunit gamma [Escherichia coli O55:H7 str. USDA 5905]
          Length = 1122

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
              + L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NALFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|30064164|ref|NP_838335.1| exonuclease V subunit gamma [Shigella flexneri 2a str. 2457T]
 gi|30042421|gb|AAP18145.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Shigella flexneri 2a str. 2457T]
 gi|313647885|gb|EFS12331.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri 2a str.
            2457T]
          Length = 1122

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 111/1086 (10%), Positives = 251/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNSLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E      +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEAPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++                 G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFHTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|146312906|ref|YP_001177980.1| exonuclease V subunit gamma [Enterobacter sp. 638]
 gi|145319782|gb|ABP61929.1| exodeoxyribonuclease V, gamma subunit [Enterobacter sp. 638]
          Length = 1124

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 114/975 (11%), Positives = 254/975 (26%), Gaps = 123/975 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       + V +    Q L+  F +  G  + I     
Sbjct: 11  DVLEALMEFIVEREHPLDPFEPE-----MVLVQSTGMAQWLQMSFAQKFGIAANI--EFP 63

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
                + + F   L       P  S   +     +L+ I  + LP     +     LS  
Sbjct: 64  LPASFIWDMFVRVLPDI----PKQSAFSKQSMSWKLMSILPDMLPRDEFVML-RHYLSDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   LA   AD+ D       +W +               +    L  A    TE+
Sbjct: 119 TDKRKLFQLASRTADLYDQYLVYRSQWLNRWEAGELVDGLPDAQVWQAPLWKALVEHTEK 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             +        +       + I G +   P     +  +  H +  
Sbjct: 179 LGQPQW-HRANLYDRFIATLEAASQRPEGLPSRVFICGISALPPVYLNALKALGKHVDIH 237

Query: 257 IVLPGLDCHIPTAIW--NTITEKSTNITSSNTTYSTHPQY------------------SL 296
           I+           I    TI    T          + P +                    
Sbjct: 238 ILFTNPCREYWGDIQDPRTIARFVTRQRRRLFEDRSIPLFKDSAGAAQRFNEEGIQDLPN 297

Query: 297 AKLLDFLDIKREDVKRLGN----------------VSNEMYGRSMVISKSFLPPDTSDMR 340
             L  +  + R+ V  L +                  + ++     I             
Sbjct: 298 PLLASWGKLGRDYVHMLSDITSSGEGDVDAFADINPDSLLHNVQSDILDLQNRVIAGITA 357

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADR 396
                 +K   +      + +    + + E   +   L   L    +   +   ++ AD 
Sbjct: 358 EEFARSDKKRKLDPDDRSLTIHMCHSPQREVEVLHDKLLALLQDDPELTPRDIVVMVADI 417

Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +        +         +   +S      +        SLL+          +  L+ 
Sbjct: 418 DSYSPFIQAVFGSATGERYLPYAVSDRRARQSHPALQAFISLLSLPDSRFISEDVLALLD 477

Query: 452 HPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
            P+   +F   E+ L   +  +    +R   +  ++ +         +            
Sbjct: 478 VPVLAARFDIDEEGLRYLRQWVNESGVRWGIDDDNVQEFSLPPTGQHTWAFGLTRMLLGY 537

Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                          + +  L  + +    + L+     K        +  W  +    L
Sbjct: 538 AMESSQGEWNDVLPYDESTGLIAELVGHLASLLMQLNRWKRELMQPRPLDAWLPICREML 597

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
           ++  L +      +   E  +   ++  + I +            D +T+ +D E +  +
Sbjct: 598 KDFFLPDSDTEAAMALIE--QQWQAIIDEGISSHYDQPVPLSLLRDELTQRLDQERISQR 655

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 656 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRALAPLGF--DLMSQQPQRGDRSRRD 712

Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728
                  E     +  L  +       +N     S  +Q L+   G   +          
Sbjct: 713 DDRYLFLEALISAQQMLYISYIGHSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLNCD 772

Query: 729 --------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
                           +      Y++  R+       P  K          Q      +E
Sbjct: 773 KSEQKVKAHITHCHSRMPFDPTNYVENERQSYAREWLPAAKNSGIAHSDFIQELEPRPTE 832

Query: 775 ------IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
                 +++    P   + ++ L+++F     + PD       G   + +  +L+   + 
Sbjct: 833 TLTFEQLQRFWAHPVRAFFQQRLQVNFRSEDSEIPDSEPFTLDGLSRYQLNQQLLNALVE 892

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
           +   ++     +              +          ++   +E+    Q          
Sbjct: 893 QENAQMLFRRYRAA-GQLPFGAFGEIVWDAQCQEMQALADRVIEN---RQPG-------K 941

Query: 886 PAKMAIESIGIHLTG 900
             ++ +   GI LTG
Sbjct: 942 SLEIDLNCNGIQLTG 956


>gi|324119861|gb|EGC13740.1| exodeoxyribonuclease V [Escherichia coli E1167]
          Length = 1136

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPDDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|300920323|ref|ZP_07136761.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 115-1]
 gi|300412648|gb|EFJ95958.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 115-1]
          Length = 1122

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKSHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|281179847|dbj|BAI56177.1| exonuclease V gamma subunit [Escherichia coli SE15]
          Length = 1122

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            + L +             +                + I G +   P   + +  +  H  
Sbjct: 177  DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|331648582|ref|ZP_08349670.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli M605]
 gi|330908874|gb|EGH37388.1| exodeoxyribonuclease 5 gamma chain [Escherichia coli AA86]
 gi|331042329|gb|EGI14471.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli M605]
          Length = 1122

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            ++L +             +                + I G +   P   + +  +  H  
Sbjct: 177  DKLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYACEWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|320656511|gb|EFX24407.1| exonuclease V subunit gamma [Escherichia coli O55:H7 str. 3256-97 TW
            07815]
          Length = 1122

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    ++   S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLEPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
              + L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NALFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|29829618|ref|NP_824252.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606726|dbj|BAC70787.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 1202

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/677 (11%), Positives = 172/677 (25%), Gaps = 58/677 (8%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90
               +    V     T +A  EL     +   K     P +       G+ V      F 
Sbjct: 79  GTGQVAPEQVLGLTFTNKAAGELAERVRKALVKAGITDPDVIDPDNPPGEPVISTYHAFA 138

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL  + L   +    RLL  A    +    L +         P   P    +   L  
Sbjct: 139 GRLLTDHGLRIGLEPTARLLADATRYQLAARVLREA--------PGPYPALTRSFPDLVG 190

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYW 195
           +L  +   +     + E+L A   E                       A   L      +
Sbjct: 191 DLLTLDSELAEHLVRPEELRAYDAELLSSLEGAKLSNAELRKIPETAAARRELADLVVRY 250

Query: 196 TERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                E +              A  RAE   +++     +++     +  A   L++ + 
Sbjct: 251 RAAKRERDLLDFGDQIALSATLARTRAEVGAILRDEFRVVLLDEYQDTSVAQRVLLAGLF 310

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
               G  V    D       W   +  + +    +  ++     +   L           
Sbjct: 311 GGGTGHPVTAVGDPCQAIYGWRGASVANLDDFPEHFAHADGRLATRQAL----------- 359

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                 S        ++  +    +     +  +   +     +    V         EE
Sbjct: 360 ------SENRRSGGRLLDLANGLAEPLRALHAGVEALRPAPGAEHDGQVRCALLRTHAEE 413

Query: 371 AISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
              IA +L   +   K+    A++         ++  L    + +++     L      +
Sbjct: 414 IDWIADSLAHLVRTGKEPGEIAVLCRTATDFAEIQGALVARDVPVEVVGLSGLLHLPEVA 473

Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            L ++   +       ++  L+  P  + G  +  L   +  L +   R   +      L
Sbjct: 474 DLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVSHARVGADDDPDRRL 533

Query: 489 KSLVLDRIATQ----KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
            + V     ++     +              + +  +            L     +   +
Sbjct: 534 AAAVEGVDPSEVISLADALDTFLEAPLEDPAEADDGLPFSADARVRFARLAAELRDLRRS 593

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
             +  +    ++       V L            E       + +    +       A  
Sbjct: 594 LADPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDVAASFAASDGEATLLAFL 653

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
                    +           +T+ +L   +S+ L +D + + GL  G +P    +  + 
Sbjct: 654 GFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGTFPSTQGREKWT 713

Query: 665 SRVMQSDLNLKTAEKYI 681
           ++       L+     +
Sbjct: 714 AQGKVLPHELRGDADTL 730



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 89/742 (11%), Positives = 178/742 (23%), Gaps = 57/742 (7%)

Query: 217  AEAEHLMKGTKGPIIIAGSTGSIP-ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
            AE +  +     P+ + G +G +       +  V            L   +    W    
Sbjct: 445  AEIQGALVARDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGP 504

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                 +        +H     A++    D  R     +  V             +FL   
Sbjct: 505  RDLALLGRRARLLVSH-----ARVGADDDPDRRLAAAVEGVDPSEVISLADALDTFLEAP 559

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395
              D    D       + +  F+ +A    D  R  A  +   L   L     +  L  + 
Sbjct: 560  LEDPAEADDGLPFSADARVRFARLAAELRDLRRSLADPLMDVLHRVLAVTGLEVELSASP 619

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              LA R +  L+ F       A      TL + +      A ++     A+         
Sbjct: 620  HALAARRRETLSNFLDVAASFAASDGEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKV 679

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                  K L     A+  +      ++       +         + +             
Sbjct: 680  LTAHKSKGLEWDVVAVPGLVTGTFPSTQGREKWTAQGKVLPHELRGDADTLPDIEAWDSR 739

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW-----------TKLTVTCLQNV 564
              +     +          + Y T        L    W           +       ++ 
Sbjct: 740  GMKAFHEAMKEHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKRPRGPSDFLHALYEHC 799

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                          EE +   +L     +    +  +                   ++  
Sbjct: 800  AAGYGEIEAWAEEPEENEENPALHEAAADHAWPLPLDDTALARRRAAAETVLAYLERVAS 859

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
                    +  S + +  +            ++  ++PF         +     +     
Sbjct: 860  HENAH--PSAPSAVHDPTSYDDPDWPPPEDAESPHEDPFDEAYGDLAHDEAPYGEDDVPE 917

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                E          + S     +P  A+    R    G         +  +    W R 
Sbjct: 918  EGLLEDDGDDDADWESWSTDRPTVPHQAAAPEARPHPAGPPPLT---PEEARTIASWDRD 974

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
            LD  T +    R            + + S++ +L  DP    A+ + +    P       
Sbjct: 975  LDALTGELLRARASVTDVPLPA--SLTASQLLELAADPDGF-AQELARPMPRPPQ----P 1027

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
               RGT FH  +    ++                     E + LP     I      +  
Sbjct: 1028 AARRGTRFHAWVEARFEELRLP---------------MLEPDELPGSEAEIADERDLEAL 1072

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG---FVDITDYKTG 921
                  E    +      V +P ++AI      + G  D +   +       +I D+KT 
Sbjct: 1073 KD--AFERTPYAHRTPYRVEVPFQLAIAGR--VVRGRIDAVYRKEGNDGTTYEIVDWKTS 1128

Query: 922  DNPKKETAQKLIDPQLSLEAAA 943
                 +        QL++   A
Sbjct: 1129 RTRTADP------LQLAVYRLA 1144


>gi|54026512|ref|YP_120754.1| putative helicase [Nocardia farcinica IFM 10152]
 gi|54018020|dbj|BAD59390.1| putative helicase [Nocardia farcinica IFM 10152]
          Length = 1255

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/590 (10%), Positives = 153/590 (25%), Gaps = 76/590 (12%)

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                 +  A  G         +     + +         P     L+E +      ++  
Sbjct: 651  RIAPTDDPAPAGPAADDHRGLIDQSSAEVLRGLLVGAADPALLDGLTEVESAPLRRVLRA 710

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
            + +           ++      + S   +  V   +       +   +L         ++
Sbjct: 711  LDRARAARRRGAGLEDVLWALWTASRLERRWVAQSERGGAVGMQADRDLDAAVGLFDAAA 770

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
             +   +            +++ +++       +P       + +L    +    +D + +
Sbjct: 771  AYVDRLPRAG-----IEGFVEYLSQQEIPHDTRPLTTPGEEVALLSAHAAAGREWDVVAV 825

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNL----------KTAEKYIGQAAHDFEMANGTRH 696
             G+ EG+WP    +   L      DL            ++A     +        +  R 
Sbjct: 826  AGVQEGIWPNPRPRGTLLHTEDLVDLLAGVGGAGEHVSRSAPILAEERRLLLVACSRARR 885

Query: 697  LIYTRSLRE--NNIPTIASRWLQRLLVLGGT----------------------------- 725
             +   ++     +   + SR+L  LL                                  
Sbjct: 886  SLLVTAVESVTGDRDLVPSRFLAELLGHDEDGEPGVLPVVDPGRALVMHSLVAELRGAVC 945

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR----------PKPFPPLEAQPRTYSFSEI 775
            D   + ++R +      R  D   +    +              +   +      S S +
Sbjct: 946  DPTADPERRRRAAFQLARLADAGVRGTAPEEWYGTAELSCADPLWSEEDDAVVALSPSTV 1005

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            +QL   P      R            D     +G+L H     L++    +         
Sbjct: 1006 EQLRTCPLRWALERHGGT------DGDNPHAVKGSLVH----TLVQALAGRVPEAQVRAA 1055

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI- 894
                    +  +         R     +  +FL      +  + +  V +P    + +  
Sbjct: 1056 LDKAWRAIDPGDGW--HSRQERRRTEAMLETFLAWVRNTRGELTQAGVEVPVDCVLPARS 1113

Query: 895  ----GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
                 + + G  DR++  + G   I D KTG NP  + A      QL+    A  +G+  
Sbjct: 1114 EDERPVRIRGRIDRLERDEFGRFVIVDVKTGKNPISKQAAADHA-QLATYQVAAASGALD 1172

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
                 +      + + +    +  T   +        +     + +    
Sbjct: 1173 --PEGEPGGARLVYVAKPHTKEGATQRMQDPLDAAALDSWRDTIHQAAAA 1220



 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/412 (13%), Positives = 98/412 (23%), Gaps = 33/412 (8%)

Query: 30  LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK---------KSTILPIIKS 80
           LV+            ASV +   +K+A  +LR                   +T  P++++
Sbjct: 60  LVDLAAGRIAAGADPASVLVLTHSKQAAADLRDAVTVRLAGHDSPTGGVPGATTEPLVRT 119

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
           L                N  P      RLL  A    + R  L   + D+   +    P 
Sbjct: 120 LHSYAFSVLRRHASAHGNPPP------RLLTGAEQDAVLREMLRGDLADIAEGATGLWPQ 173

Query: 141 SPANAIWL---AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
               A+ L   A+ L D++          EDL  L  E     W+ A  FL    +    
Sbjct: 174 RLHAALGLDGFAQQLRDLMLRATERGLGPEDLERLGREHDRPEWVAAGRFLLRYEQAL-- 231

Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
                            +  EA            + G+     AT   +          +
Sbjct: 232 ------------LLRWSVGVEAPEATAPALDAAELLGACLDALATDAELLAAERARIRYL 279

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
            +       P A        +   T+          ++                    V 
Sbjct: 280 FVDDAQHLDPQAATLVRVVGAAAHTAVVAGDPDQAVFTFRGADARFAADPGAPADRRVVL 339

Query: 318 NEMYGRSMVIS-KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
            E +     +   +                    +       V +       +EA  IA 
Sbjct: 340 RENHRSGPSVRLAAARIAAKLPGAAPHRPAVAAESGGGDGVAVRVRVLATPAKEAALIAD 399

Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            LR +        + +             L R  +   +    P      + 
Sbjct: 400 HLRRAHLTGGVPWSRMAVIVRSVPLSLAPLRRALLAAGVPVHQPAVDVPLAR 451


>gi|157162274|ref|YP_001459592.1| exonuclease V subunit gamma [Escherichia coli HS]
 gi|157067954|gb|ABV07209.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli HS]
          Length = 1122

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 114/1084 (10%), Positives = 259/1084 (23%), Gaps = 161/1084 (14%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
               ++ +   G+ +TG             G +         +P   +  +    QL LE 
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLR-------WSPSLLSVAQG--MQLWLEH 984

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
                A                           +  D +       +E++L  L +++   
Sbjct: 985  LVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGY 1027

Query: 1002 QNGE 1005
            + G 
Sbjct: 1028 REGM 1031


>gi|333000937|gb|EGK20507.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri K-272]
 gi|333015561|gb|EGK34900.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri K-227]
          Length = 1122

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 115/1087 (10%), Positives = 259/1087 (23%), Gaps = 167/1087 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E      +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEAPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL-SEKSLKNLIEIV 998
            E                  +L Y       +         ++   +L +E++L  L +++
Sbjct: 983  E------------------HLVYCASGGNGESRLFLRKDGEWRFPQLAAEQALHYLSQLI 1024

Query: 999  TLLQNGE 1005
               + G 
Sbjct: 1025 EGYREGM 1031


>gi|331658970|ref|ZP_08359912.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA206]
 gi|315295776|gb|EFU55093.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 16-3]
 gi|331053552|gb|EGI25581.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA206]
          Length = 1122

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 111/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            + L +             +                + I G +   P   + +  +  H  
Sbjct: 177  DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLSSLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728
                   E     +  L  +   R   +N     S  +Q L+   G   +          
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 729  ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS--- 773
                         + +            L    ++      +         +   F+   
Sbjct: 771  ESEARVKAHLTCHHTRMPFDPQNYQPGNLQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 774  -----EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
                  +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|145218886|ref|YP_001129595.1| hypothetical protein Cvib_0065 [Prosthecochloris vibrioformis DSM
           265]
 gi|145205050|gb|ABP36093.1| hypothetical protein Cvib_0065 [Chlorobium phaeovibrioides DSM 265]
          Length = 921

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 96/859 (11%), Positives = 225/859 (26%), Gaps = 83/859 (9%)

Query: 136 LSLPISPANAIWLAKNLAD--------------IIDIIETEEKKWEDLHALKNEKYGMWW 181
           L L     +A+ L ++LA+              ++   E        +   + +     W
Sbjct: 4   LLLTPDAPSAMKLRRSLAESGALSGVIAGTWPELMAQAEGCVVLPPAVTDWEEKLNMGVW 63

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
            +   F + + +       +   +    +   L+ A       GT G I       + P 
Sbjct: 64  NVPGAFWRRSLEAVLAEEKKSITALIGSHLAMLLEA------AGTAGRIEGVDRLSANPR 117

Query: 242 TARLMSTVANHPNGAIV-----LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
             + +  +A             L  ++  +  +   TI            +        +
Sbjct: 118 LQKRVEDLAALHEAMGHALPPALHSINRILKASPERTIRRMRIYHDEGWLSTGPWQDALM 177

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
             L        +          ++        +    P  S ++        +P+  K  
Sbjct: 178 GHLNGSAGEAED---------PQLRKALEKSVEGSRAPSGSSLKVMQEQLFTLPSGGKAL 228

Query: 357 --SDVALIEADNEREEAISIAIALRMSLD-----ENKKKSALITADRNLARRVKLELTRF 409
               +  +   +  +E    A  ++ ++      +    + L+ +D + +   +   T  
Sbjct: 229 LDGSLQWLRVRDGMQEMEVAAGMMQEAVRSTTGMQYANMALLLPSDISYSHAAREVFTAA 288

Query: 410 GINIDISAGIPLSTTL--HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
           GI +  S       T       + +LL  +  +   +++A+L+  PL  +   E      
Sbjct: 289 GIPL--SGLRDAYETRDLGGEAVLNLLYCLEDVPPAVSMASLLSSPLMPWSTVEGNRLA- 345

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
                           D +D+++ +    A  K    +    +    +         DH+
Sbjct: 346 ---------------QDAIDMRNTLKLLEAQSKKAHRMLELVTGGPAD--------ADHL 382

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
              +               +   +      +           +        +     +  
Sbjct: 383 KARMEEFAGLLDEAEELKSHRERAGQLCKAIAAELTASAGPVKWQELRDIVQITPQAAPA 442

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
             +    G  +     E    + +L           +S++  I+ T E      +   L 
Sbjct: 443 LPEPTREGVAVFYEGQEPWRTVRQLYAAGCSAGHFPESASASIIFTDE------ELEELK 496

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
                   +   +     +  +  L   T          D +  +       T +     
Sbjct: 497 AATGMDMERAAVRGERNRKRFRRQLTSATEAAVFLVPGRDAQGKSLAPSSSITFAEALFE 556

Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                   L     L         +K G+  +     +            +     +   
Sbjct: 557 TGNDRGLVLTLENSLEYNMAGGLPEKPGKEGVPPRELVPEDLDFKKKNLLETGMQKDGTL 616

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
           +  S S +  L+  P A    R L +       +  D    GT+ H +   L        
Sbjct: 617 KPESPSRLDTLLVSPLAWLFER-LDIKAREWAPEKLDPLKMGTVAHAVFEHLFTPEGIAG 675

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHL---FHKISHSFLEH-EEKIQSSIEKIFV 883
              I +L+ ++ D+  +K                    I  + LE  E         +  
Sbjct: 676 AEGIRNLLPELYDNAVKKTCPFLLRREWTVERENLMQGILKAALEWSEILEAMQARVVET 735

Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY-KTGDNPKKETAQKLIDPQLSLEAA 942
            I  +  +   G+ + G AD +  L    + + DY K+    +++      D Q  L   
Sbjct: 736 EISLEGTL--SGVPIHGNADLLLKLDDNRMLVVDYKKSSSGSREKRMNAGWDLQAELYRT 793

Query: 943 ALKAGSFSQIDCRKVANLF 961
            ++ G   +          
Sbjct: 794 MIETGGPEKGKKVSGEAAE 812


>gi|300906651|ref|ZP_07124340.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 84-1]
 gi|301302958|ref|ZP_07209085.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 124-1]
 gi|300401552|gb|EFJ85090.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 84-1]
 gi|300841622|gb|EFK69382.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 124-1]
 gi|315256682|gb|EFU36650.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 85-1]
          Length = 1122

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKSHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|323183366|gb|EFZ68763.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 1357]
          Length = 1122

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 259/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +  +        +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLDSSQELDAFVDVMPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|24114103|ref|NP_708613.1| exonuclease V subunit gamma [Shigella flexneri 2a str. 301]
 gi|24053236|gb|AAN44320.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Shigella flexneri 2a str. 301]
 gi|281602178|gb|ADA75162.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Shigella flexneri 2002017]
 gi|332753542|gb|EGJ83922.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri 4343-70]
 gi|332753678|gb|EGJ84057.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri K-671]
 gi|332754347|gb|EGJ84713.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri 2747-71]
 gi|332765776|gb|EGJ95989.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri 2930-71]
 gi|333000343|gb|EGK19926.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri K-218]
 gi|333015067|gb|EGK34410.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri K-304]
          Length = 1122

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 111/1086 (10%), Positives = 251/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNSLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E      +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEAPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++                 G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFHTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|319947958|ref|ZP_08022138.1| UvrD/REP helicase [Dietzia cinnamea P4]
 gi|319438386|gb|EFV93326.1| UvrD/REP helicase [Dietzia cinnamea P4]
          Length = 1140

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 83/785 (10%), Positives = 195/785 (24%), Gaps = 64/785 (8%)

Query: 210  YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-----IVLPGLDC 264
             +  L  +E    ++     I+I     + P    L   + + P G+      +    D 
Sbjct: 341  ARELLRDSEVRARVRARYLRILIDEFQDTDPIQLDLAELLTSGPGGSGTEPGRLFTVGDP 400

Query: 265  HIPTAIWNTIT------EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
                  +           +  + T +          +       L+   +    +   ++
Sbjct: 401  KQSIYRFRRADITTYLRARGGSATGTQGPDVERLSTNFRCSRPVLEWVNDVFSEVLTAAD 460

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
             +      +  +   P             +   + +     A         EA  +A  +
Sbjct: 461  GIQPEYRALEPAPDRPPHDPSHGPRPFVFRSEEVPEHCPPEANETTRRHWAEASDVARVI 520

Query: 379  RMSLDENKK--------------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
              ++ E                   A++   R     ++  L   GI+    A   +  T
Sbjct: 521  ATAIREGWTHESKNGEHTPLRLGDIAILLPSRGALPMLETCLDHAGIDFRTEASSIVYGT 580

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                 L   + A+    D  ++   ++ PL   G  +    RA          G      
Sbjct: 581  PEIRDLLLAVRAVANPADEASLVGALRSPLFGCGDDDLLRWRAG---------GGGWVLT 631

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                  L    +A            +R   E  E  V                   +   
Sbjct: 632  APAPDDLASSPVAEGMRYLSALGRSTRRPGELLERLVHDRMVFESVAESPRRRDLWRRIR 691

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                    W +      +    +       L  E+     +++    ++       +A +
Sbjct: 692  FVIEHAWQWEESASDPARADLREYADWAMALTAEDARVPEAAIPEIGVDAVRITTIHASK 751

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
             ++    ++ G +          L      E             + +  +          
Sbjct: 752  GLEYPMVIVAGMSRGWPNSNERLL----WTEDDPPRPAVSFSAAVRDPAFDSAAGLEKLH 807

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANG-----TRHLIYTRSLRENNIPTIASRWLQRL 719
            +R  +  L      +   + A   + A          +  +        P   +      
Sbjct: 808  ARAERIRLLYVATTRAESRLAVSGQYAATQKGKPRSDVWASLLGSVIEEPDAPALVEYGE 867

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKL----------DYTTKQPHYKRPKPFPPLEAQPRT 769
             +L      +        + + TR++            T               + + + 
Sbjct: 868  NLLEAAAAPEVDVPDEAGWTERTRQIAARSAERAGWSATRIVHPDAVDATPVDEDVERQP 927

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
                ++   + + +A    R  +L   P +       D GT  H++       R+     
Sbjct: 928  SLPQQLAAALRERFAPAPARPEELPPRPRYTPIASGPDVGTAVHHLAEHTDLGRLLGPAA 987

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHL-------FHKISHSFLEHEEKIQSSIEKIF 882
            + +  M        ++         +              ++ + L  E   +++    +
Sbjct: 988  DPDSAMADWDRWAADQLVALGLGGGLQGSRNPEAVAEMVSVARTALTSEPVRRAASRTHW 1047

Query: 883  VNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
              +PA  A+   +   + + G  D +     G + I DYKT       T  +    QL  
Sbjct: 1048 AELPAAGALSTADGARVAVDGVVDLVVQEDDGSLSIIDYKTDVAVTTGTVDE-YLLQLCA 1106

Query: 940  EAAAL 944
             A  L
Sbjct: 1107 YADLL 1111


>gi|116629673|ref|YP_814845.1| ATP-dependent nuclease, subunit B [Lactobacillus gasseri ATCC 33323]
 gi|311110684|ref|ZP_07712081.1| ATP-dependent exonuclease subunit B [Lactobacillus gasseri MV-22]
 gi|122273389|sp|Q043G5|ADDB_LACGA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|116095255|gb|ABJ60407.1| ATP-dependent nuclease, subunit B [Lactobacillus gasseri ATCC 33323]
 gi|311065838|gb|EFQ46178.1| ATP-dependent exonuclease subunit B [Lactobacillus gasseri MV-22]
          Length = 1158

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 102/993 (10%), Positives = 254/993 (25%), Gaps = 158/993 (15%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                  +      +  L   + +   ++ L +++   +++L                   
Sbjct: 71   SFSRLAWYFLKDEAIKLPQILDDAASVMLLEQIVKDHQDELKLFQNKNQIT--------- 121

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                  +  L  + + I +      DL  + NEK           L+I    + +RL E 
Sbjct: 122  ------SGALRQMYEAILSVRAGNIDLENIDNEKLNEETSYKVHDLQIIYDDFIDRLSEK 175

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
             A+        L+          +      +  +         +  ++            
Sbjct: 176  FAT--KDEMQLLLNEFLAKSDSLSTMVFYFSDFSHFSLQELTSVRLISKKAKNTT----- 228

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
                       +  K+      +        Y + + +  L+   ++ +     +     
Sbjct: 229  -----------LAFKTKIGKIDSKAEQGDYDYVVQRTIRQLEHFWQNQQLNYQTTEFPLT 277

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            ++   S        ++  +  + +   P           ++AD+   EA  +A  +   +
Sbjct: 278  KTNPSSLLNGVWTKTNGFDESLSKFLQP-----------VKADSRYAEAYFVARTIYQQV 326

Query: 383  ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
               +   +   ++  + N         L +  I         +        + +L     
Sbjct: 327  ALNNYRYQDFLVLAPNLNEYETYLTPILRQNNIPFFNDLQKEMKYHPLVVAVENLQQIFK 386

Query: 439  KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            +      +  L+K  L   ++           + LE   L              L    +
Sbjct: 387  RGFQTDNVIALMKTQLFIPEWYKSVARYQNDVDLLENFVLAHGIKG-------ELWKKPL 439

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL-LVDHILQCITPLVTYKTNKNSTCGNLSIS--DW 553
             +  +   +   +S    E+ +      +  + +    + T K  +       +    + 
Sbjct: 440  KSFVDAEVIALDKSEQEVEELDRLRKYFISILSEFFEDIETEKDPQAGVTIFWNFLIKNR 499

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                +   +    D          E+   TL+ L    +      + +  ++ D++    
Sbjct: 500  VAKRLEAWRKEANDAGDLQLAQQPEQVWSTLNDLLKDYLLVAK--EFSLEQFFDLLISGF 557

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                          + I      +   +  + + G      P+      F S      LN
Sbjct: 558  SEANFSQIPSTLDAVNISEMGMVQGQGYKQVFIIGATSSNLPQIEKIPGFFSSENLEQLN 617

Query: 674  --------LKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTIASRWLQRLLV 721
                    L+  +K      +      ++  +  +  +  +    N     S + ++LL 
Sbjct: 618  DGNNASGYLEDQQKINNLDQNYQFGNALSLASDKIYISYPVINTANEQLEPSIFYKQLLR 677

Query: 722  L--GGTDFFDNLKKRGQCYLDWTRKLDYTTK----------------------------- 750
            L         +L       L +    + +                               
Sbjct: 678  LTQANEFSQHDLPSSAGDLLTFMTNPEASLGYLTYLKGKQEVNVDSILELTEQEIGEVAQ 737

Query: 751  ----------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                       P    PK    L       S S+++    + +  +    L L     F+
Sbjct: 738  NVLEGSNFKNVPENLPPKLAQELYGDRIETSVSQLETYYQNSFEYFLNYGLHLKKR--FE 795

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEI------NHLMKQIIDSHFEK-----ENLP 849
             + D    G  +H     L+KK   KN           + +   +    ++     + L 
Sbjct: 796  NELDVIQAGNYYHETFDYLVKKIKEKNLDFADLTDSKLNQLLIEVREELKEKGRYRQLLN 855

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK--MAIESIG---------- 895
               +    H   + + +   +     +       +  +       +  +           
Sbjct: 856  DPFNKYLFHKLDQTTSNVAHYWHSNVNKTTFRPQYSELSFGKNQKVTGLSYSWKDENNQK 915

Query: 896  --IHLTGFADRIDLLK-SGFVD--ITDYKTGDNPKKETAQKLI-----DPQLSLEAAALK 945
              + L G  DR+DL K +  V   + DYK+      +     +       Q+      LK
Sbjct: 916  KIVDLRGKMDRVDLAKVNDRVLGEVIDYKS----SAKKFDLGLFANGISMQMISYLEVLK 971

Query: 946  AGS--FSQIDCRKVANLFYIRLKQKFKIDCITN 976
              +  F+Q     V   FY  +    +      
Sbjct: 972  KNNKFFAQGKNLDVLGAFYQNITSSLERLSSDK 1004


>gi|220921602|ref|YP_002496903.1| double-strand break repair helicase AddA [Methylobacterium nodulans
            ORS 2060]
 gi|219946208|gb|ACL56600.1| double-strand break repair helicase AddA [Methylobacterium nodulans
            ORS 2060]
          Length = 1157

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 91/843 (10%), Positives = 196/843 (23%), Gaps = 64/843 (7%)

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAA 185
            + +    S L   +  A A      L  +   I    E +   L AL  +          
Sbjct: 319  LDEQARLSTLRERLKAARAHARTCALFTLAAEIHRRVELQKARLGALDFDDLIH---KTL 375

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            D L      W    ++      V    A      +  +         AG+        R 
Sbjct: 376  DLLTRVDSAWVLYKLDRG-IDHVLIDEAQDTNPEQWEILRRITEDFCAGAGARSGEMPRT 434

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK-LLDFLD 304
               V +         G              + +     +         +  A+ +L  +D
Sbjct: 435  RFAVGDPKQSIYSFQGAAPEEFETTRQAWRKAALGAGLTFEDVGLTLSFRSARGVLRGVD 494

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                  +    +S        V     +              +  P        V  +EA
Sbjct: 495  ATFALAEHFRGLSFGDEAVGTVHETVRIGAPGQVELWPAETPSPEPEPDAWVQPVDAVEA 554

Query: 365  DNEREEAISIAIALRMSLDENKKKS----------ALITADRNLARRVKLELTRFGINID 414
                                   ++           L+         V   L   G+ + 
Sbjct: 555  GAPALVVARRVARAVRCWTTTGDEAGRIWRPGEILILVRKRSAAFEGVIRALKAEGVPVA 614

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
                + ++  +    L +   A     D + +AT +K PL      +     A+      
Sbjct: 615  GQDRLDIAAHIAVMDLVAAGRAALLPEDDLTLATALKTPLVGLSDDDLVRIAARREASES 674

Query: 475  ALRGNKNSYDIMD----LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
              R      +  D      +  L         T    + + L         L+     + 
Sbjct: 675  LARALARHAEAGDPAAQRGAAALAEWQALARETGPFGFYAELLGPRGGRTRLVARLGGEA 734

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
               +  + T              T        +   D             G T+      
Sbjct: 735  GDAIDVFLTAAVQAEQGTDAPSLTGFLARYAPSGGRDAG-----------GHTVKRDLES 783

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            + +    +  +  + ++    ++     +P       L  +          D   + G  
Sbjct: 784  VRDEVRVMTVHGAKGLEAGLVVLIDGC-EPLGRNDPPLLPMEIG-------DGTAVHGGT 835

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT--RSLRENNI 708
              VW  +   +       +  L+ +  +++       +      +  +        +   
Sbjct: 836  VPVWSPSKGHDCPAIAAARDALHDRARQEHN---RLLYVAMTRAKDRLVIAPYRGSDKET 892

Query: 709  PTIASRWLQR--LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
            P      ++R  +   GG +  +      + + +                 +  P    +
Sbjct: 893  PEAWCEMVRRGLVEAFGGVERTEMPYGPAETWREGAAVPMPPAPPVSAPAAEALPDWLFR 952

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
            P       +  L                       DP    RG L H ++  L       
Sbjct: 953  PVAPEAEPLPPLRPSGLGAADE----PRRSDARSSDPAARRRGVLIHALLEHLPAVAPE- 1007

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI- 885
                     ++   +        P +    R          L   +            + 
Sbjct: 1008 ---------RRETAATAFVAARAPGLAPPDRAAIVAAVMRLLADPDLAVLFGPAARAEVT 1058

Query: 886  -PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-AQKLIDPQLSLEAAA 943
               ++ +      + G  DR+ +     V + D+KTG  P ++      +  Q++L AA 
Sbjct: 1059 LAGRIPLRGAEWPVHGRVDRLAVT-DEAVWLCDFKTGRPPSEDAPVPAGMAAQVALYAAL 1117

Query: 944  LKA 946
            L  
Sbjct: 1118 LAR 1120


>gi|159184128|ref|NP_353063.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58]
 gi|159139465|gb|AAK85848.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 1185

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 99/950 (10%), Positives = 226/950 (23%), Gaps = 120/950 (12%)

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
               F  + G    +L    +L D V      ++  +        +  R +EL    L+  
Sbjct: 253  AEAFWPLPGLSGLVLDTYLTLADEVGGSRVIEVAYALREAKRQPDPVRRMELIEAALLTA 312

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
                     +  +          +A+ LA++            +    L  +        
Sbjct: 313  KGEKKSDAYVINKGMQKSAPDLVDALTLARDH-------VVACRNRYRLVRMLVATKS-- 363

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIII 232
               A    +     + +   + +                         + +      I++
Sbjct: 364  ---ALVLAERLIGDFEDLKKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGIDHILV 420

Query: 233  AGSTGSIPATARLMSTVANHP--------NGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
              +  + P    ++ ++A               +    D       +     +  +    
Sbjct: 421  DEAQDTSPVQWSIIQSLAADFFNGESARMGRRTLFAVGDEKQSIYSFQGARPERFSQERD 480

Query: 285  NTTYS-THPQYSLAKL------------LDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
             T       + +  ++            L  +D    D K    +S +        +++ 
Sbjct: 481  ETKRRVDQVEQAFHRIRLPLSFRSTEDVLAAVDQVFSDPKNASGLSADNEPVEHRSNRAG 540

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------------ 379
             P              +         D AL E+      A  IA  +             
Sbjct: 541  HPGTVEVWDMVAPETTEDEEDWTAPFD-ALRESAPATIVARRIAARIADMIGNQTIIEKG 599

Query: 380  -MSLDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                 E      L+         +  EL  R  I +  +  + L+  +    L +L   +
Sbjct: 600  VERAVEPGDILVLVRKRAAFVNALTRELKRRKNIPVAGADRLRLTDHIAVQDLLALGRFV 659

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                D +++A L+K PL      + +   A  +      +  +        +      I 
Sbjct: 660  VLPEDDLSLAALLKSPLFNLTEDDVFEIAATRSEAESVWQRLQVLSG----EETSRLSIV 715

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
            T K    +   ++    +     + L D   + +  L    ++      + ++       
Sbjct: 716  TDKLRHFISLSKTATVHDFFAAVLTLHDGRKKFLGRLGNEASDVLDEFLSFALDHERTGL 775

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                  + + E         +++ +    + +     G                      
Sbjct: 776  PGLQAFLSVLETDSPEVKREQDKDRGEVRIMTVHASKGLEAPVVF--------------- 820

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                      +   G+      +   L     +   +P     + F + +++SD      
Sbjct: 821  ----------VVDGGSKAFNHSHVPKLRFVEGDGDAFPVWLPGSGFSNHLIRSDEERLKT 870

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL--QRLLVLGGTDFFDNLKKRG 735
                      +         +     R           +    L               G
Sbjct: 871  AAEDEYRRLLYVAMTRAADHLVVCGYRGQKENPECWHAIVKAALAENQDHCQPQAFSADG 930

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ----------------PRTYSFSEIKQLI 779
            + +     +           +P      E                  PR  S S    +I
Sbjct: 931  EEWQGLVWRKSEARPALAPHKPAEPQQEEDHTLPPGLLAPLPALPSLPRPLSPSGAGTII 990

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
            +D     A  +    F    +       RG L H ++  L            +   +   
Sbjct: 991  DDGADDLA--VRSPLFGEKTEASSLALQRGKLVHRMLQALP-------DFAESEREEAAR 1041

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIH 897
                      P  D   R    +     L       +        +     M +      
Sbjct: 1042 RYAERAARFWPATD---RERLIQAVLRVLSEPAVQPAFSANSRAEVSIMGTMTLGRQHYA 1098

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945
            ++G  DR+ + +   V + DYKT   P +E  +       QL++    L 
Sbjct: 1099 VSGRIDRLAVERD-RVILVDYKTNRVPPREARELPFSHVAQLAIYREILA 1147


>gi|329120232|ref|ZP_08248900.1| exodeoxyribonuclease V gamma subunit [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462573|gb|EGF08896.1| exodeoxyribonuclease V gamma subunit [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 1066

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 104/843 (12%), Positives = 210/843 (24%), Gaps = 80/843 (9%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V ++   + + +   E  G  + I                A L     L+P  + + 
Sbjct: 34  EIIVQSQGMRRFIGNYLAEHGGIAANI--RFSLPAGFNWRLTRALLPDIPELSPFDTEVM 91

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW- 166
           R   L   +    ++             L      A A  LA  LADI D        W 
Sbjct: 92  RWRLLGLFVSDGLSRPETAQAQAALSGYLC--GGGAAAYQLAGELADIFDQYLVYRPDWI 149

Query: 167 -----EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                + L  L  ++   W      FL                     +++ +     + 
Sbjct: 150 DAWQRDRLLGLGGDE--AWQAELWRFLNDGQT--------------APHRVEMWHRLEQA 193

Query: 222 LMKGT----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           L           I + G T   P   +L+  +A H    I            I     + 
Sbjct: 194 LQSPPDGLLPERICVFGITALAPMYLQLLHALAQHTEVHIFALNPASEYWGNIIEPA-QI 252

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                 ++   + HP      LL  L  +  D       S      S             
Sbjct: 253 LAAGGDADPAAAGHP------LLASLGKQGRDFFNALAESEASTDLSAYPEAPLSDSLLH 306

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALIT 393
            ++                  + ++ A +   E   +   L   L        +  A++T
Sbjct: 307 RLQYGLQTLTLPDKTATLDDSIRIVCAHSPLRELQILKDRLLELLAHDPTLQPRDIAVLT 366

Query: 394 ADRNLARRVKLE---------LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
            +                   L     ++ +S   PL      ++            +  
Sbjct: 367 PNIEPYAPYIEAVFGQESGRPLPYSVADVKLSRRRPLLHAAEQTL-----AIFESRFEAD 421

Query: 445 AIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGNK---NSYDIMDLKSLVLDRIATQ 499
            I  L+     L +FG   + L    + +E + +R             L +         
Sbjct: 422 KILGLLDTEPVLQRFGLTREDLPLLHDTIEHLNIRWGWDETMRGGADPLFTWQQGLDRII 481

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                  + +   +         ++  + +    L      + +     +++ WT+    
Sbjct: 482 LGWILPDNGELWQNHAPWHTDPAVIPLLARLAAFLRRLARWRQTWQTPATVAVWTQRITD 541

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
            LQ++             ++  + L+    +        + +       + R +   +  
Sbjct: 542 MLQDL--FVQDNQARQDMQQLAQALARWRQETELARFGGELDCSVINRHLARYLGSRS-- 597

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                   +     +  R L F TL L GLN+G +P+NT    F           +    
Sbjct: 598 EAGFLRGGITFCSMVPMRSLPFQTLCLLGLNDGQFPRNTRAAAFDLIARHPRRGDRARRD 657

Query: 680 YIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
                     + +  +HL  +   R   NN     S  L  L               GQ 
Sbjct: 658 DDRYL-FLEALLSARQHLHLSYVGRSIHNNEALAPSALLNELADCLAD-------MTGQT 709

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
               T +         Y             R    + + +   +P   Y   +       
Sbjct: 710 ASAITEQHTQQHPLQAYSPRYFDNSGLTSSRADYAAALNRPSENPAPFYTAPLTGDTPP- 768

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
              +     D    + N +   +++ ++   P          +  F   +         +
Sbjct: 769 ---QSVAHNDFLDFWKNPVRHWLRRNLDWRAPYHTQA--TPTNEPFAPTDERETAAAYTQ 823

Query: 858 HLF 860
              
Sbjct: 824 ARL 826


>gi|238854241|ref|ZP_04644585.1| ATP-dependent nuclease, subunit B [Lactobacillus gasseri 202-4]
 gi|238833052|gb|EEQ25345.1| ATP-dependent nuclease, subunit B [Lactobacillus gasseri 202-4]
          Length = 1158

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 103/993 (10%), Positives = 255/993 (25%), Gaps = 158/993 (15%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                  +      +  L   + +   ++ L +++   +++L                   
Sbjct: 71   SFSRLAWYFLKDEAIKLPQILDDAASVMLLEQIVKDHQDELKLFQNKNQIT--------- 121

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                  +  L  + + I +      DL  + NEK           L+I    + +RL E 
Sbjct: 122  ------SGALRQMYEAILSVRAGNIDLENIDNEKLNEETSYKVHDLQIIYDDFIDRLSEK 175

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
             A+        L+          +      +  +         +  ++            
Sbjct: 176  FAT--KDEMQLLLNEFLAKSDSLSTMVFYFSDFSHFSLQELTSVRLISKKAKNTT----- 228

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
                       +  K+      +        Y + + +  L+   ++ +     +     
Sbjct: 229  -----------LAFKTKIGKIDSKAEQGDYDYVVQRTIRQLEHFWQNQQLNYQTTEFPLT 277

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            ++  IS        ++  +  + +   P           ++AD+   EA  +A  +   +
Sbjct: 278  KTNPISLLNGVWTKTNGFDESLSKFLQP-----------VKADSRYAEAYFVARTIYQQV 326

Query: 383  ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
               +   +   ++  + N         L +  I         +        + +L     
Sbjct: 327  ALNNYRYQDFLVLAPNLNEYETYLTPILRQNNIPFFNDLQKEMKYHPLVVAVENLQQIFK 386

Query: 439  KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            +      +  L+K  L   ++           + LE   L              L    +
Sbjct: 387  RGFQKDNVIALMKTQLFIPEWYKSVARYQNDVDLLENFVLAHGIKG-------ELWKKPL 439

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL-LVDHILQCITPLVTYKTNKNSTCGNLSIS--DW 553
             +  +   +   +S    E+ +      +  + +    + T K  +       +    + 
Sbjct: 440  KSFVDAEVIALDKSEQEVEELDRLRKYFISILSEFFEDIETEKDPQAGVTIFWNFLIKNR 499

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                +   +    D          E+   TL+ L    +      + +  ++ D++    
Sbjct: 500  VAKRLEAWRKEANDAGDLQLAQQPEQVWSTLNDLLKDYLLVAK--EFSLEQFFDLLISGF 557

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                          + I      +   +  + + G      P+      F S      LN
Sbjct: 558  SEANFSQIPSTLDAVNISEMGMVQGQGYKQVFIIGATSSNLPQIEKIPGFFSSENLEQLN 617

Query: 674  --------LKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTIASRWLQRLLV 721
                    L+  +K      +      ++  +  +  +  +    N     S + ++LL 
Sbjct: 618  DGNNASGYLEDQQKINNLDQNYQFGNALSLASDKIYISYPVINTANEQLEPSIFYKQLLR 677

Query: 722  L--GGTDFFDNLKKRGQCYLDWTRKLDYTTK----------------------------- 750
            L         +L       L +    + +                               
Sbjct: 678  LTQANEFSQHDLPSSAGDLLTFMTNPEASLGYLTYLKGKQEVNVDSILELTEQEIGEVAQ 737

Query: 751  ----------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                       P    PK    L       S S+++    + +  +    L L     F+
Sbjct: 738  NVLEGSNFKNVPENLPPKLAQELYGDRIETSVSQLETYYQNSFEYFLNYGLHLKKR--FE 795

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEI------NHLMKQIIDSHFEK-----ENLP 849
             + D    G  +H     L+KK   KN           + +   +    ++     + L 
Sbjct: 796  NELDVIQAGNYYHETFDYLVKKIKEKNLDFADLTDSKLNQLLIEVREELKEKGRYRQLLN 855

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK--MAIESIG---------- 895
               +    H   + + +   +     +       +  +       +  +           
Sbjct: 856  DPFNKYLFHKLDQTTSNVAHYWHSNVNKTTFRPQYSELSFGKNQKVTGLSYSWKDENNQK 915

Query: 896  --IHLTGFADRIDLLK-SGFVD--ITDYKTGDNPKKETAQKLI-----DPQLSLEAAALK 945
              + L G  DR+DL K +  V   + DYK+      +     +       Q+      LK
Sbjct: 916  KIVDLRGKMDRVDLAKVNDRVLGEVIDYKS----SAKKFDLGLFANGISMQMISYLEVLK 971

Query: 946  AGS--FSQIDCRKVANLFYIRLKQKFKIDCITN 976
              +  F+Q     V   FY  +    +      
Sbjct: 972  KNNKFFAQGKNLDVLGAFYQNITSSLERLSSDK 1004


>gi|331654304|ref|ZP_08355304.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli M718]
 gi|331047686|gb|EGI19763.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli M718]
          Length = 1122

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|256019382|ref|ZP_05433247.1| exonuclease V subunit gamma [Shigella sp. D9]
 gi|332280501|ref|ZP_08392914.1| recC protein [Shigella sp. D9]
 gi|332102853|gb|EGJ06199.1| recC protein [Shigella sp. D9]
          Length = 1122

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 259/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSAKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +  +        +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLDSSQELDAFVDVMPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPNSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|170683034|ref|YP_001744990.1| exonuclease V subunit gamma [Escherichia coli SMS-3-5]
 gi|170520752|gb|ACB18930.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli SMS-3-5]
          Length = 1122

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 103/976 (10%), Positives = 237/976 (24%), Gaps = 127/976 (13%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         +      +L  L+     +    +        L+  
Sbjct: 63  PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                   L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRLDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
           + L +             +                + I G +   P   + +  +  H  
Sbjct: 177 DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
             ++      +    I +              ++                          
Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
              LL        D   L +           +                +           
Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLEGSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                 +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
            P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                     S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
               L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728
                  E     +  L  +   R   +N     S  +Q L+   G   +          
Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 729 --------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
                           +    Q Y    R+       P   +         Q   ++  E
Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQQLPFTLPE 830

Query: 775 ------IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
                 +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
           ++  E      +   D                     +++   +      Q         
Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885 IPAKMAIESIGIHLTG 900
              ++ +   G+ +TG
Sbjct: 939 QSMEIDLACNGVQITG 954


>gi|323971649|gb|EGB66879.1| exodeoxyribonuclease V [Escherichia coli TA007]
          Length = 1122

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|320182270|gb|EFW57173.1| exonuclease V subunit gamma [Shigella boydii ATCC 9905]
          Length = 1122

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 117/1086 (10%), Positives = 261/1086 (24%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDRENFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +      +   E  +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAAMMLIE--QQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728
                   E     +  L  +   R   +N     S  +Q L+   G   +          
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 729  --------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPR 768
                            +    Q Y    R+       P   +          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGGRQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|319406427|emb|CBI80067.1| ATP-dependent nuclease subunit A [Bartonella sp. 1-1C]
          Length = 1152

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 91/824 (11%), Positives = 203/824 (24%), Gaps = 109/824 (13%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAG 234
             A     I  K +T+     N           +            ++ +      I++  
Sbjct: 340  AAFQLCDIYLKIYTDLKKANNLLDFDDLIERTLYLLQHKGASQWVQYKLDRGIDHILLDE 399

Query: 235  STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
            +  + P   +++  +A           N   V    D       +     ++        
Sbjct: 400  AQDTNPKQWQIIQLLAQEFFTGHSQRTNTRTVFAVGDEKQSIYSFQGAVLENFAENGRII 459

Query: 287  TYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
                             YS     D L       +   N       ++  + +       
Sbjct: 460  QKKVKQVEQKFEKIQLNYSFRSTADVLKSVDLVFESPENYKGLSAEQAKTVHEPIRIHSP 519

Query: 337  SDMRNTDILENKIPN-IQKCFSDVALIEADNER-EE--AISIAIALR--------MSLDE 384
             D+   D +  K         S V  ++    R  E  A +I+  L+          L  
Sbjct: 520  GDVIIWDAISKKTNEFPDDWLSTVDHLDTPQIRLAEKIAETISNWLKNGEMLPAKQRLLR 579

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                  L+         +   L    + +  +  + L+T +    L +L   + +  D +
Sbjct: 580  AGDIMVLVRKRDQFVPALSRALKLRHVPVAGADRLQLTTHISVRDLMALARFVLQPQDDL 639

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI---ATQKN 501
            ++A ++K PL      E Y    +                   +  ++ DR+    T  +
Sbjct: 640  SLACVLKSPLFSLSEDELYQLAVQRT--GSLWESLSIHSSSHTVFKIIFDRLNTYRTLVD 697

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
               V  + S +   DK    ++     +    L  +  +  +                 L
Sbjct: 698  KMPVFEFYSYILNNDKGRQKIIARLGTEANEVLDAFIDHTLTIQKTG-----LPGLQAFL 752

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            + + ++E      L      +    +    +     ++   +  +D              
Sbjct: 753  EILSINEPEIKRELD-----QNCEEVRIMTVHAAKGLEGAIVFLVD-------------- 793

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                      G+           +   L +             ++     L+        
Sbjct: 794  ---------PGSAIWHPQYAPHFLKCSLGDKQAFIWRPNAQHHTKHFDKVLSRLKERAEE 844

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                  +         +                   +L+          +K   +    W
Sbjct: 845  EYKRLLYVGMTRAEDRLIIC---GYTNQRETPNTWLQLVKKALKPHAVPIKGPAEDITAW 901

Query: 742  TRKLDYTTKQPHYKRP---------KPFPPLEAQPRTYSFSEIKQL------INDPYAVY 786
             R     +      +           P P           +  K L      IND    +
Sbjct: 902  -RYCITPSCPAPMYQEISCETHQIFPPLPAFFHNKVPTESTLSKPLKPSVVGINDTKTKF 960

Query: 787  ARRILKLDFIPHFKKDPDRTDR----GTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
              +  +    P   +   +       G   H ++  L      K        +     SH
Sbjct: 961  FPQKERFSISPVLGEKNTKKTFSIEYGNFIHQLLQHLPNYPPTKRQDYAQFYLNTKA-SH 1019

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
            + K      +  IW      I  +     +   S++    V +   + I      ++G  
Sbjct: 1020 WHKTQREKALHHIW-----TILDN--PDLKPFFSNLSHAEVALMGIVKINGKEQMVSGQI 1072

Query: 903  DRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALK 945
            DR+ +  +  V   D+KTG         ++    Q++L    L+
Sbjct: 1073 DRLCITHN-SVFFADFKTGLSPENDTDIKQHHLLQMALYQKLLQ 1115


>gi|16130726|ref|NP_417299.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli str.
            K-12 substr. MG1655]
 gi|89109605|ref|AP_003385.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli str.
            K-12 substr. W3110]
 gi|157158584|ref|YP_001464157.1| exonuclease V subunit gamma [Escherichia coli E24377A]
 gi|170018935|ref|YP_001723889.1| exonuclease V subunit gamma [Escherichia coli ATCC 8739]
 gi|170082390|ref|YP_001731710.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli str.
            K-12 substr. DH10B]
 gi|238901957|ref|YP_002927753.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli BW2952]
 gi|256024677|ref|ZP_05438542.1| exonuclease V subunit gamma [Escherichia sp. 4_1_40B]
 gi|293416066|ref|ZP_06658706.1| exodeoxyribonuclease V [Escherichia coli B185]
 gi|300923195|ref|ZP_07139250.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 182-1]
 gi|300950555|ref|ZP_07164462.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 116-1]
 gi|300958140|ref|ZP_07170297.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 175-1]
 gi|301026209|ref|ZP_07189675.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 196-1]
 gi|301326150|ref|ZP_07219536.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 78-1]
 gi|301645211|ref|ZP_07245164.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 146-1]
 gi|307139506|ref|ZP_07498862.1| exonuclease V subunit gamma [Escherichia coli H736]
 gi|312972960|ref|ZP_07787133.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 1827-70]
 gi|331643506|ref|ZP_08344637.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli H736]
 gi|119669|sp|P07648|EX5C_ECOLI RecName: Full=Exodeoxyribonuclease V gamma chain; AltName:
            Full=Exodeoxyribonuclease V 125 kDa polypeptide
 gi|56966627|pdb|1W36|C Chain C, Recbcd:dna Complex
 gi|56966630|pdb|1W36|F Chain F, Recbcd:dna Complex
 gi|266618791|pdb|3K70|C Chain C, Crystal Structure Of The Complete Initiation Complex Of
            Recbcd
 gi|266618794|pdb|3K70|F Chain F, Crystal Structure Of The Complete Initiation Complex Of
            Recbcd
 gi|42689|emb|CAA27604.1| recC protein (aa 1-1122) [Escherichia coli]
 gi|882714|gb|AAB40469.1| exonuclease V subunit [Escherichia coli str. K-12 substr. MG1655]
 gi|1789186|gb|AAC75861.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli str.
            K-12 substr. MG1655]
 gi|85675638|dbj|BAE76891.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli str.
            K12 substr. W3110]
 gi|157080614|gb|ABV20322.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli E24377A]
 gi|169753863|gb|ACA76562.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli ATCC 8739]
 gi|169890225|gb|ACB03932.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli str.
            K-12 substr. DH10B]
 gi|238861054|gb|ACR63052.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli BW2952]
 gi|260448130|gb|ACX38552.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli DH1]
 gi|291432255|gb|EFF05237.1| exodeoxyribonuclease V [Escherichia coli B185]
 gi|299879801|gb|EFI88012.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 196-1]
 gi|300315162|gb|EFJ64946.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 175-1]
 gi|300420504|gb|EFK03815.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 182-1]
 gi|300450123|gb|EFK13743.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 116-1]
 gi|300847115|gb|EFK74875.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 78-1]
 gi|301076481|gb|EFK91287.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 146-1]
 gi|309703177|emb|CBJ02511.1| exodeoxyribonuclease V gamma subunit [Escherichia coli ETEC H10407]
 gi|310332902|gb|EFQ00116.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 1827-70]
 gi|315137426|dbj|BAJ44585.1| exonuclease V subunit gamma [Escherichia coli DH1]
 gi|315615208|gb|EFU95845.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 3431]
 gi|323941570|gb|EGB37751.1| exodeoxyribonuclease V [Escherichia coli E482]
 gi|331036977|gb|EGI09201.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli H736]
          Length = 1122

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|226940130|ref|YP_002795203.1| RecC [Laribacter hongkongensis HLHK9]
 gi|226715056|gb|ACO74194.1| RecC [Laribacter hongkongensis HLHK9]
          Length = 1159

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 103/943 (10%), Positives = 219/943 (23%), Gaps = 87/943 (9%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
              L +  L    R    +P  L      V ++   Q L+    E     +  L      
Sbjct: 15  AEMLRDVILAWLARDPLSSP--LDDEVFLVQSQGMAQWLKHALAESPAGIAAALDFQLPQ 72

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
           G           +L  +  P  S   +     RL       L + +        +     
Sbjct: 73  G---FLWRCYRAVLGEDSVPAQSPFDKAPLSWRLYRELPAWLHEPVFAPLARF-VEADAD 128

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-----ADFLKIASKYWT 196
           P     LA  LAD+ D  ++    W       ++        A       +     +   
Sbjct: 129 PRRLYQLAHQLADLYDQYQSYRADWLTGWENGHDDITRHGRPAPLPEGERWQAELWRRLA 188

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKG--TKGPIIIAGSTGSIPATARLMSTVANHPN 254
            +L     +         + A  E           +++ G +     T   +  ++ H +
Sbjct: 189 GQLASARHTHRAAVHQRFVAALREGTPPPGSLPERVVVFGLSALPQQTLEALDAISRHSH 248

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY-------------------- 294
             + +     +    I              +   S  P                      
Sbjct: 249 VLMAVNNPCRYYWGDIVEGREWLRRQAEQRHRRRSGMPAALDDSTLHLHAHPLLASWGRQ 308

Query: 295 --SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
                 LL   D  +          +         +   L      +   + L  +   +
Sbjct: 309 GRDFIALLADYDRWQSAAATHAQDIDLFDEAVPAGTLPLLQQVQQAVLELEPLPAEPHRL 368

Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDEN-----KKKSALITADRNLARRVKLEL- 406
                 +A   A +   E   +   L    D+       +   ++  D +        + 
Sbjct: 369 PLPDHSIAFHVAHSPLREVEILHDQLLAMFDDPELALKPRDVMVMVPDISSYAPFIRAVF 428

Query: 407 ------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH-------- 452
                     I   +S    +ST      L  LL+          +  L+          
Sbjct: 429 GKLPPDHPRFIPFALSDQSAVSTEPLLRALQQLLDLPALRLTVSEVLELLDVAAMRRRFR 488

Query: 453 ------PLAKFGFPEKYLSR---AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
                 PL         +     A    EL        +     L  ++L        + 
Sbjct: 489 LRETDLPLLTRWIEGSGIRWGLSAAQRAELGMPDDFDQNSWHFGLDRMLLGYACGAGASW 548

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   +   D  LA  L D        L T    +       + + W        + 
Sbjct: 549 QGMAPYDEVGGMDAALAGQLADL-------LSTLAHWRQCLQEPATPAGWQARIAALAEA 601

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
               +      L+        + + +      +  +       D++   +   +V  +  
Sbjct: 602 CLDIKDEHDLLLYAGIADTLDNWVATLDGNGLADTRLPLEVVRDVLLGQLADTSVSMRFL 661

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
             + +     +  R + F  + L GLN+G +P++  +  F           ++       
Sbjct: 662 GGA-VNFGTLMPMRAIPFKVICLLGLNDGDYPRSQNRADFDLMAQDYRPGDRSRRDDDRY 720

Query: 684 AAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                 + +  R    +   +   +N P   S  +++L       +              
Sbjct: 721 L-LLEALLSARRRFYLSWVGKSPRDNRPRPPSVLVEQLRDYLAAGWQAAPLGTEPATTGL 779

Query: 742 TRKLDYTTKQPH------YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
              L               + P   P  +  P     S+ + + +               
Sbjct: 780 LAALTTEHPLQPFSPRYFSRAPDARPQPDQPPLFTYDSDWRAIHDATDPPAEPAAALPLP 839

Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
           +P +    D               +  R+     E++ L +       E   L P     
Sbjct: 840 LPDWDGRTDAVTLARFLRQPAATFLHGRLKVRFGELDELAED------EPFALDPLATHQ 893

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
            +    +      E E           +     +   + G  L
Sbjct: 894 LKSRLLEAVRDVPEAETGRHWQAAATRLTEEGGLPFGAAGAQL 936


>gi|83719885|ref|YP_441989.1| superfamily I DNA/RNA helicase [Burkholderia thailandensis E264]
 gi|83653710|gb|ABC37773.1| Superfamily I DNA and RNA helicases [Burkholderia thailandensis E264]
          Length = 920

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 91/858 (10%), Positives = 216/858 (25%), Gaps = 154/858 (17%)

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV 249
            + +   +       G     +     +             +I+       P    +++ +
Sbjct: 186  YEDLTDKKGYLDYSGILNRAVAELTRNRELRERLALRVKHVIVDEYQDVNPVQEAIVAEL 245

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 GA +    D       W     ++                     +  + ++   
Sbjct: 246  RQL--GADICVVGDDDQTIYQWRGSEVQNILTFDRRYND-----------VTQVRLEENF 292

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                G V+      S +  +       +  ++ +              D+  +  D+  E
Sbjct: 293  RSSEGVVALAREFISHLNHRLPKEMKATHAQSYE------------DGDIVALGFDSPEE 340

Query: 370  EAISIA---IALR---------MSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            EA  IA   +ALR                  + L+ + R  A  V   L    +   I+ 
Sbjct: 341  EAEYIAKTCMALRGVVVHESSSERGISWSDMAVLLRSVRRDAPAVTAALDAVRVPYVITG 400

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
               L           L   +                          L  A    +L   +
Sbjct: 401  MDNLFQKEEVEAARQLFYFLAG------------------EIEMNELRAAWQRADLGITK 442

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV---DHILQCITPL 534
                       ++ V  + A           +  ++  +K                   L
Sbjct: 443  HALEGAIAAAAEARVDMQDAEIGQFKVYNLQRQFIAFMEKSELREERVPGGRGEIVFYNL 502

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
              +    +        SD  +   +    +        P  W +                
Sbjct: 503  GKFSQAISDFESIHFHSDPVEKYKSFAGFLRFHAENAYPEGWQDNGF------------- 549

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--NEG 652
                                             + I+   +++ L +  + +  L  N  
Sbjct: 550  ----------------------------VSPDAVRIMTVHQAKGLQWPVVFIPQLVKNRF 581

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY--TRSLRENNIPT 710
                   +N +     ++  N              F +A          T +  E N   
Sbjct: 582  PAKGGGGRNAWHLLPSEAFSNAARYRGGADDERRLFYVAVTRAQKYLHMTWAPHEGNRTA 641

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
              +                         L               ++  P P       T 
Sbjct: 642  QVASDFY------------------NEVLASKYVKRRVQNYATRQQLTPAPKASVANVTL 683

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            SFS++K     PY    R +   +         +    G   H+ + E+  + +   T +
Sbjct: 684  SFSDVKYFFECPYQFKLRILYGFNAPLD-----EALGYGKSLHDALAEVHARALRGETID 738

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                 +++I+ H       P +    +    K+  +++       +++E  F     ++A
Sbjct: 739  SREA-EELIERHLRAPYAYPDLKDKLKSAAVKVVAAYIRKNAAEFNNLE--FSEKAIEIA 795

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            +   G+ + G  D +  + +  V I D K+     +  A+ + + QL + A       + 
Sbjct: 796  LGD-GVSVAGRIDLVRRMDTDEVTIVDLKSN---DRAQAEAVTETQLHIYAL-----GYK 846

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
            ++  R      Y+ + +                 + ++   ++++   T L+  + P   
Sbjct: 847  ELTGRP---ADYVEIYELDNQRQKRRSVDG----DFTDDVRRDVLAAATALRRNQLP--- 896

Query: 1011 HLRLSEKSNIQSEYDHLA 1028
              +  +K+    +Y +L 
Sbjct: 897  -PKPGKKACGACDYCNLC 913


>gi|300936254|ref|ZP_07151187.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 21-1]
 gi|300458579|gb|EFK22072.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 21-1]
          Length = 1122

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++           I +              ++                          
Sbjct: 236  IHLLFTNPCRCYWGDIKDPAYLAKLLTRQRRHSFEDRELSLFRDSENVGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|323935819|gb|EGB32122.1| exodeoxyribonuclease V [Escherichia coli E1520]
          Length = 1122

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMFLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|110834679|ref|YP_693538.1| exodeoxyribonuclease V subunit gamma [Alcanivorax borkumensis SK2]
 gi|110647790|emb|CAL17266.1| exodeoxyribonuclease V gamma chain [Alcanivorax borkumensis SK2]
          Length = 1138

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 87/861 (10%), Positives = 227/861 (26%), Gaps = 59/861 (6%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L   + +  + +PL+P  L + T  V +    Q L+ +  +  G  +     + +     
Sbjct: 16  LTELVADWLQREPLSP--LETETFLVQSNGMAQWLKLQLADALGISAGFQFQMPA----R 69

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                   +L  +  P  S   +   L RL  +    L            L+  +     
Sbjct: 70  FLWGAYRTVLGEDQVPRTSPFDKSRLLWRLYRLLPTLLNSEHFGPL-RHFLADDVDGRKR 128

Query: 146 IWLAKNLADIIDIIETEEKKW--------EDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
             LA+ LAD+ D  +     W        + L   ++      +  +  +     +    
Sbjct: 129 HQLAERLADLFDAYQMYRADWLDDWENGNDRLRKTQDRDTFDDFPASQLWQAHLWRALLA 188

Query: 198 RLVE--LNASSPVGYQIALMRAEAEHLMKGT----KGPIIIAGSTGSIPATARLMSTVAN 251
            + +     S    ++  +     +             +II G +         ++ ++ 
Sbjct: 189 DMDDSKQGLSRSAIHRDFMAALTQQQEQGTPPPRLPRRLIIFGISALPQQALEALAALSQ 248

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD-IKREDV 310
           H    +++     H    I          + +     +  P+  +  LL       R+ +
Sbjct: 249 HCQILMLVQNPCQHYWADIVEDKQLLRRQLDNRKRHLTALPENRVNPLLAAWGKQGRDFI 308

Query: 311 KRLGNVSNEMYGR-----------SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
             L +  +    R           +              +    + E       +  S +
Sbjct: 309 GLLYDHDDPDSYRSAFQNQIDLFENREPHTLLQQLQQDILDLEPLPEPNRRLPLEMDSSL 368

Query: 360 ALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL-------TR 408
                 + + E   +   L            +   ++  D          +         
Sbjct: 369 QFRIGHSAQREVEILQDELLDRFSNDPTLQPRDVIVMVPDIEAYAPHIDAVFGRLERDDP 428

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF--PEKYLSR 466
             +   +S     + +  +  + SLL+          I  L+  P  +  F   E  L +
Sbjct: 429 RYLPYTLSDRSAGAASPLAQAVESLLHLPQWRFTATDILDLLDVPAVRERFGIDEGDLPQ 488

Query: 467 AKNALELVALRGNKNSYDIMDLK------SLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
               ++   +R   NS     L       +     +        +    + +  E  +  
Sbjct: 489 LARWIDQARIRWGLNSPQRKTLDVPGFEQNSWAFGLKRMLAGYLLGDGPAWMGIEPLDEV 548

Query: 521 VLLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
             L   +   +   L T + +   +  + S   W +     L ++          L    
Sbjct: 549 AGLGAELAGRLSRLLDTLEQHWQQSRTDASARQWQQRFTQLLDDLFAPVDEADQTLDAG- 607

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
               L+   +   E               +   ++ E++  +      + I   +  R +
Sbjct: 608 LRDALNDWLAACAEADFDSLLPLTVARRPLLDALNAESMSQRFMAG-RINICTLMPMRAI 666

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LI 698
            F  + L G+ +G +P+      F       +       +         E     R  L 
Sbjct: 667 PFRHVCLLGMKDGDYPRQQQPMDFDLMRQWGNYRPGDRSRRDDDRYLFLEALLSARDSLY 726

Query: 699 YTRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
            + + R   +N     S  + +L       +  +  +             ++ +  +   
Sbjct: 727 ISWTGRNVRDNSERPPSVLVAQLRDHINQRWHTDQGEPVDALTVSHPLQPFSARYFYSAN 786

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                        ++++   + +++           L  +    +       G      +
Sbjct: 787 DASAANNADAHILHTYANEWRALHEEQTHRVDNDQPLPPLE-NNEPISCAALGRFLKQPV 845

Query: 817 TELIKKRINKNTPEINHLMKQ 837
               ++R+     +   ++  
Sbjct: 846 AHFFEQRLKARLKQQRQVLDD 866


>gi|332999576|gb|EGK19161.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri VA-6]
          Length = 1122

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 255/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E      +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEAPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|82701856|ref|YP_411422.1| UvrD/REP helicase [Nitrosospira multiformis ATCC 25196]
 gi|82409921|gb|ABB74030.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrosospira
            multiformis ATCC 25196]
          Length = 1196

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 82/845 (9%), Positives = 193/845 (22%), Gaps = 106/845 (12%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTG 237
              L  A         +           A +RA             +      ++I     
Sbjct: 388  RLLPYAVAQLKLVFQQHGKVDFTEVAQAALRALGDPEAPTDLALALDYRIRHLLIDEFQD 447

Query: 238  SIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
            +  +   L++ +       +G  +    D       +            +    +     
Sbjct: 448  TSISQYELVTKLTTGWEPGDGRSMFVVGDPMQSIYRFRQAEVGLFLRARAAGFGNVTLGP 507

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
                          D       S      ++        P  +           +     
Sbjct: 508  VSLSANFRSQRGIVDWVNATFASVMPQRENISTGSVRYSPSVAVRTALPDPAVSVHPFFN 567

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
                          E A  + I  R   DEN   +A++  +R+    +   L + G+   
Sbjct: 568  DDHG---------AEGAKVVEIVARAQRDENCSTTAILVRNRSHLAEILPRLKKAGLRFR 618

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
                  L        L  L  A+    D +A   L++ P       + +   +    +  
Sbjct: 619  AIEIEGLGRQPVVQDLLVLTRALMHPADRLAWFALLRAPWCGLTLADLHALVSAAPDQSD 678

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                     +  +              N            +D+     +     + +  +
Sbjct: 679  EASAPGTVQEGEE--------------NAGPGRGTVWEWLQDENRIAFVSADGYERLLRV 724

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                    +     S+    +        + L     L +    E+            E 
Sbjct: 725  RNVLKACMANRNRQSLRATVEAA-----WLALGGPACLEDEAGLEDASAYLDYLESHEEA 779

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
            GS     A      +   + G +  P  +   TL I+   +++ L FD +I+ GL     
Sbjct: 780  GSIRSLAA------LEEGLTGLSALPDAKADGTLQIMTIHKAKGLEFDCVIVPGLGRLSR 833

Query: 655  PKNTAKNPFLSRVMQSDLN---------------------------------LKTAEKYI 681
                    ++  +                                       L   ++ +
Sbjct: 834  SDEKKLFMWMEHLRDEWPETEEEESGGRNDLLLAPIQETGSGSDPIYSWIEKLDDEKECL 893

Query: 682  GQAAHDFEMANGTR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                  +  A   R  L    S    +     +           +  +  ++   +    
Sbjct: 894  EDGRLLYVAATRARKRLHLLGSTGVISGNEGGAELRPPPARTLLSKIWPAVESFYREAAA 953

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF- 799
                 D  +   + ++     P+  Q      S  +     P     +       +P + 
Sbjct: 954  KAVFSDPASCGDNKEQEARDKPVIDQSLRRLVSGWEL---PPAPRALQWEAGPSPLPPWR 1010

Query: 800  -----KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                          G + H  +  + +  +          ++ +                
Sbjct: 1011 EVEYSWAGETARLVGNIVHKWLQRIAEDGLADWNAARIIDLRDVFRRQLIACGAISTGKD 1070

Query: 855  IWRHLFHKISHSFLEHEEKIQSSI-----EKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909
                   ++  +      + +        ++    +     I    +      DR     
Sbjct: 1071 DSDVAVKRVMAALTHAVSEPRGRWLLGPQQEARSELRMTGHIGGQYMDF--VIDRTFRDV 1128

Query: 910  SGFVDITDYKTGDNPKK------ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            +G   + DYKT  +         +  Q+    QL   AA ++A     ++ + V    Y 
Sbjct: 1129 AGQRWVVDYKTSSHEGADMGEFLDREQERYRDQLDRYAALVQA-----VEGQPVRRGLYF 1183

Query: 964  RLKQK 968
             L + 
Sbjct: 1184 PLLKG 1188


>gi|193065104|ref|ZP_03046178.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli E22]
 gi|260845484|ref|YP_003223262.1| exonuclease V, gamma chain, RecC [Escherichia coli O103:H2 str.
            12009]
 gi|192927235|gb|EDV81855.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli E22]
 gi|257760631|dbj|BAI32128.1| exonuclease V, gamma chain, RecC [Escherichia coli O103:H2 str.
            12009]
 gi|323160035|gb|EFZ45999.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli E128010]
          Length = 1122

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 115/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                 H   +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCHEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|300815760|ref|ZP_07095984.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 107-1]
 gi|300820610|ref|ZP_07100761.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 119-7]
 gi|331669554|ref|ZP_08370400.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA271]
 gi|331678800|ref|ZP_08379474.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli H591]
 gi|300526874|gb|EFK47943.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 119-7]
 gi|300531689|gb|EFK52751.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 107-1]
 gi|331063222|gb|EGI35135.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA271]
 gi|331073630|gb|EGI44951.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli H591]
          Length = 1122

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPTTGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|332344712|gb|AEE58046.1| exodeoxyribonuclease V, gamma subunit RecC [Escherichia coli UMNK88]
          Length = 1122

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 113/1084 (10%), Positives = 256/1084 (23%), Gaps = 161/1084 (14%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                    L+   AD+ D        W       +  +           L  A   +T  
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDWLAHWETGHLVEGLGEAQAWQAPLWKALVEYTHE 178

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            L +             +                + I G +   P   + +  +  H    
Sbjct: 179  LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297
            ++      +    I +              ++                            
Sbjct: 238  LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342
             LL        D   L +           +                +             
Sbjct: 298  PLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                +    +    S +      + + E   +   L   L+E+     +   ++ AD + 
Sbjct: 358  FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDATLTPRDIIVMVADIDS 417

Query: 399  ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                   +         +   IS      +        SLL+          +  L+  P
Sbjct: 418  YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454  LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
            +    F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478  VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537

Query: 505  VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                    S    + +  L  + +    + L+     +        + +W  +    L  
Sbjct: 538  ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
              L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598  FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                + I   +  R + F  + L G+N+GV+P+  A   F   +M          +    
Sbjct: 656  AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 712

Query: 684  AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727
                 E     +  L  +   R   +N     S  +Q L+   G                
Sbjct: 713  RYLFLEALIAAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772

Query: 728  -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
                                  + G+        L   ++          P     P T 
Sbjct: 773  EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827
                +++    P   + +  L+++F     + PD       G   + I  +L+   + ++
Sbjct: 833  PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892

Query: 828  TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
              E      +   D                     +++   +      Q           
Sbjct: 893  DAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 940

Query: 887  AKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
             ++ +   G+ +TG             G              P   +  +    QL LE 
Sbjct: 941  MEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWLEH 984

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
                A                           +  D +       +E++L  L +++   
Sbjct: 985  LVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGY 1027

Query: 1002 QNGE 1005
            + G 
Sbjct: 1028 REGM 1031


>gi|110806759|ref|YP_690279.1| exonuclease V subunit gamma [Shigella flexneri 5 str. 8401]
 gi|110616307|gb|ABF04974.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella flexneri 5
            str. 8401]
          Length = 1122

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 112/1086 (10%), Positives = 251/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E      +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEAPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   S+ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQSIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++                 G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFHTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|254037873|ref|ZP_04871931.1| recC protein [Escherichia sp. 1_1_43]
 gi|226839497|gb|EEH71518.1| recC protein [Escherichia sp. 1_1_43]
          Length = 1122

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVQLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|218690948|ref|YP_002399160.1| exonuclease V subunit gamma [Escherichia coli ED1a]
 gi|218428512|emb|CAR09438.2| exonuclease V (RecBCD complex), gamma chain [Escherichia coli ED1a]
          Length = 1122

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 111/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            + L +             +                + I G +   P   + +  +  H  
Sbjct: 177  DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLSSLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728
                   E     +  L  +   R   +N     S  +Q L+   G   +          
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 729  ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS--- 773
                         + +            L    ++      +         +   F+   
Sbjct: 771  ESEARVKAHLTCHHTRMPFDPQNYQPGNLQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 774  -----EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
                  +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|218696418|ref|YP_002404085.1| exonuclease V subunit gamma [Escherichia coli 55989]
 gi|218353150|emb|CAU99005.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli 55989]
          Length = 1122

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPDDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|188493611|ref|ZP_03000881.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 53638]
 gi|194439865|ref|ZP_03071929.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 101-1]
 gi|253772324|ref|YP_003035155.1| exonuclease V subunit gamma [Escherichia coli 'BL21-Gold(DE3)pLysS
            AG']
 gi|254162750|ref|YP_003045858.1| exonuclease V subunit gamma [Escherichia coli B str. REL606]
 gi|300931285|ref|ZP_07146625.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 187-1]
 gi|188488810|gb|EDU63913.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 53638]
 gi|194421202|gb|EDX37225.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 101-1]
 gi|242378370|emb|CAQ33148.1| recC, subunit of RecBCD [Escherichia coli BL21(DE3)]
 gi|253323368|gb|ACT27970.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli
            'BL21-Gold(DE3)pLysS AG']
 gi|253974651|gb|ACT40322.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli B str.
            REL606]
 gi|253978816|gb|ACT44486.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli
            BL21(DE3)]
 gi|300460939|gb|EFK24432.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 187-1]
 gi|323172875|gb|EFZ58506.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli LT-68]
 gi|323960735|gb|EGB56358.1| exodeoxyribonuclease V [Escherichia coli H489]
          Length = 1122

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|163745129|ref|ZP_02152489.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex HEL-45]
 gi|161381947|gb|EDQ06356.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex HEL-45]
          Length = 1123

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 83/814 (10%), Positives = 190/814 (23%), Gaps = 124/814 (15%)

Query: 186  DFLKIASKYWTERLVELNASS--------PVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
             F       + +   +                     + A     + G    I++  +  
Sbjct: 337  RFASRFLARYADEKQKRGWLDFDDLILKARALLTDKAVAAWVLFRIDGGIDHILVDEAQD 396

Query: 238  SIPATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT- 287
            + P    ++  +         A +     +    D       +     +  +   +    
Sbjct: 397  TSPRQWDVIERLTDEFYSGAGARNEVDRTLFVVGDKKQSIYSFQGADPEELDRKGATFEQ 456

Query: 288  --YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR---SMVISKSFLPPDTSDMRNT 342
                    +    L          ++ +  V +        +                  
Sbjct: 457  KIGEAGQFFQRRSLAYSFRSSSAILRAVDGVFDPAIQTGFTNDGHLAFKDRLPGRVDLWP 516

Query: 343  DILENKIPNIQKCFSDVALIEADNEREE-AISIAIA------------------LRMSLD 383
             I +            V    A +   + A  IA                    L     
Sbjct: 517  FIEKAGPDEEGDWTDPVDRRSARHHTVQLAERIARRIKELTTEEHYLPDDSKGGLARRRI 576

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
            +      L+     L   +        + I  +  + +   L    L ++L+ +   +D 
Sbjct: 577  QPGDFLILVQRRSALFSEIIRACKAAELPIAGADRLKVGAELAVRDLAAILSFLATPDDD 636

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            +++AT +K PL  +   + +        E    +  +N  +       VL  +  Q +  
Sbjct: 637  LSLATALKSPLFGWSEQDLFTLAHYRK-EDHLWQALRNQTEAHAATLAVLRDLRAQVDYL 695

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   R+         LL     +    +    +   +                    
Sbjct: 696  RPYDLIERILTRHDGRRKLLARLGPEAEDGINAMLSQALAYER----------------- 738

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                        W + +   +             +  +  + ++    ++     +    
Sbjct: 739  -GAVPSLTGFLQWMQTDDLEIKRQIDSASNQIRVMTVHGAKGLEAPIVILPDTGRRDVTI 797

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
            K   + + GT          +     ++   P     +      +Q  L L         
Sbjct: 798  KDEIITVDGT---------PVWKASADDTPQPIRARLDEMKEAALQERLRL--------- 839

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRW------LQRLLVL-GGTDFFDNLKKRGQ 736
                F +A          +         +S +      L RL     G D     ++   
Sbjct: 840  ----FYVAMTRAEKWLIVAAAGELSKDESSWYQITAAALARLQAEPLGDDGTLRYQQGDW 895

Query: 737  CYLDWTRKLDYTTKQPHYKR--PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
              L+     +     P       +P P    + +T S S++                K  
Sbjct: 896  DALNIVETPEEIVTTPQLDPIFARPAPAPSGEAKTLSPSDLG-------------GAKAL 942

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                          GTL H ++  L              LM       F       H   
Sbjct: 943  AGEAGFDMDTALSYGTLVHELLEHLP-------------LMDAEAREIFLNRLARSHSVE 989

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914
            +      + + + L          +     +P   ++ +    L G  DR+ + +   + 
Sbjct: 990  MI-ARAQEEAEAVLRTPALAPLFADTTLAEVPVTGSLGAQ--RLHGTIDRLVIAEDHILA 1046

Query: 915  ITDYKTGD-NPKKETA-QKLIDPQLSLEAAALKA 946
            + D+KT    P    A    +  Q+   A  L+ 
Sbjct: 1047 V-DFKTNRVVPNAPDACPDGLLRQMGAYAHMLRQ 1079


>gi|325001476|ref|ZP_08122588.1| UvrD/REP helicase [Pseudonocardia sp. P1]
          Length = 836

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 95/817 (11%), Positives = 198/817 (24%), Gaps = 92/817 (11%)

Query: 30  LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT-----------GKKSTILPII 78
           L++             S+ + V ++RA +ELR     +            G ++T   ++
Sbjct: 21  LLDAVVRRVRAGAPPGSLLLLVGSRRAAEELRGRLTALLTQGGDEIAGDFGVRTTRELLV 80

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
           +++                +  P +        + R +     ++      +   S    
Sbjct: 81  RTVHSYAFGVLRLHAARHEDPPPRLLASAEQDVVVREL--LAGEIESWNGSVPGSSWPER 138

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                     A  L +++           +L  L        W+ AA F +   +    R
Sbjct: 139 LDPALGLPGFAAELRELLLRAAERGLGPAELAGLGTAHGRDEWVAAARFFRTYEEVTLLR 198

Query: 199 LV----ELNASSPVGYQIALMRAEAEH---------LMKGTKGPIIIAGSTGSIPATARL 245
                    A++P      L+ A  +            +     +++  +    P    L
Sbjct: 199 GAAGRSAPQATAPALDSAELVAAALDALAADPGLRDQERERVRHLLVDDAQDLDPQQMEL 258

Query: 246 MSTVANHPNGAIVLPGLDCHI------PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
           ++T+A      ++    D  +           N I   +  +T  +          L   
Sbjct: 259 VATLAADAESTLLAGDPDQAVLTFRGADPQGMNAIDAPTEVLTVDHRRQPGVRAAGLRLA 318

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI---------- 349
                      +      ++    +    +     D +    +                 
Sbjct: 319 EKLPGAGPARNRPGHAAGDQRPDGARTDDRPDEQADGAPADGSRAGAGGAADGTGAGAGR 378

Query: 350 ---------------------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
                                P  +     V +    +   EA  IA  LR +   +   
Sbjct: 379 PVDGDGAGAGRPVGGGGMEARPRAEDAGDAVQVRVFGSPSAEAGWIADRLRRAHLVDGVP 438

Query: 389 SALITADRNLARRVKLELTRFGIN-----IDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
            + +      ARR    L R               +PL        L  +L A  + +  
Sbjct: 439 WSEMAVLSRSARRTLPALRRALAAAGVPIAAPPDEVPLPRQPAVVPLLLVLRAASRPSAI 498

Query: 444 MAIAT--LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
            A     L+  PL           R        A   +       D         A   +
Sbjct: 499 DADLATSLLTSPLGGGDPLRMRRLRRGLLRMHAAAGHDVRVVPDDDHPDPGEVDPAVASS 558

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS--------TCGNLSISDW 553
           +  +            +  V+L       +  +                       +   
Sbjct: 559 DPLLVAMLREAVGGRPDPLVMLSPAEAAPMRDVGRLLDTAARSIASGDSVEDTLWLVWRR 618

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
           T L                      +    L    ++  +              +  + +
Sbjct: 619 TGLAKRWSDASARGGPGGAAADRDLDAVLALFDAAARYTDRLPGADV-GGFLEYLADQQL 677

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            GET+ P+  +   + +L    SR   +  + + G+ EG+WP    +   L      DL 
Sbjct: 678 PGETLAPQAPRGGAVELLSAHGSRGREWTVVAVPGVQEGLWPDLRLRGSLLGHEQLVDLV 737

Query: 674 LKTAEKY---------IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL---LV 721
              AE           + +    F +A          S  +       SR+L  L     
Sbjct: 738 AGVAEPGSAVSRSAPLLAEERRLFHVACTRARSALLVSAVQGEDE-QPSRFLDELDPRPA 796

Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
                   +  +R     +   +L      P +  P 
Sbjct: 797 DATEARPVHRPERSLVMAELVGELRRAVTAPDHGDPA 833


>gi|316931471|ref|YP_004106453.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris
            DX-1]
 gi|315599185|gb|ADU41720.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris
            DX-1]
          Length = 1161

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 91/853 (10%), Positives = 216/853 (25%), Gaps = 70/853 (8%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE--KKWEDLHAL 172
            L    + +   +   L     L+L       + +A  +A  I   + E     ++DL   
Sbjct: 317  LAERLQREGARLGALLERRRALALRERTRALLVIAAQVAGNIAREKRERGLLDYDDLID- 375

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232
                           L   +  W    ++                  +      +     
Sbjct: 376  ----------KTLAMLDSGAAGWVHFKLDRGVDH--VLIDEAQDTSPKQWKIVARLIDEF 423

Query: 233  AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
                G+     R +  V +         G          + +  + T    +    S + 
Sbjct: 424  TAGEGARDGIKRTIFAVGDEKQSIFSFQGAVPKEFAEWRDLLQRRFTGAGLTFEKVSFNY 483

Query: 293  QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
             +     +            +    +      +  S +   P   D+   ++ +++    
Sbjct: 484  SFRSGAAILQSVDHVFRDPAIYRSIHADIDYPVHASLADAGPSLIDLWPLEVPDDRQQIE 543

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSL--------------DENKKKSALITADRNL 398
                   A+ E   E   A  +   +   +                      L+    + 
Sbjct: 544  GWQAPFDAVSETSPEVRLADKVRGEISELIGRGTRTGPVGQRRPLSYGDVLILVRRRGSA 603

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
               V   L R GI +  +  + L+  +    L +L +A+    D +A+A  +K PL    
Sbjct: 604  FDAVIQALKRGGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLD 663

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
              + +    +    L A     ++       ++     +          +         +
Sbjct: 664  DDDLFKLAWQRKGPLRA-ALADHAAGDQRFAAVQRRLESYAARAQVETPFGFYAWLLGGD 722

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
             A      IL+ + P             N ++ ++ +L ++  Q         +   W  
Sbjct: 723  GADSGRARILRRLGP-----------EANDALDEFLELALSFEQKRAPSLQGFMA--WLR 769

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            E    +        +    +  +  + ++     +   T  P   +   L  L    +  
Sbjct: 770  EADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLIDTTSSPADTQRLNLIRLPGGNAAP 829

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
             +   ++  G                  V++   +    E         +         +
Sbjct: 830  GSVPAMVWAGRKADD-----------PSVVEQARSAMIEETEDEYRRLLYVAMTRAADRL 878

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ-----CYLDWTRKLDYTTKQPH 753
                    N   +       L+  G       ++          Y      ++ T     
Sbjct: 879  IVGGCMPGNRNEVRPHSWYDLISKGLESSGLAMQSVPPDGVIKRYCRPEDVIEETGSAMP 938

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
             +        +   R        + +  P         +L              RGTL H
Sbjct: 939  SQEATVTSLPDWLRRPAPGLPSAEQVLRPSDAEDDDRRRLRPGESDASRSRALQRGTLVH 998

Query: 814  NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
             ++  L        +      + +       ++       ++      + +  F      
Sbjct: 999  RLLQSLPDIAAGDRSAAAGRFLARNAPDWNSEDRDALAAQVLGLIADARFAAVF------ 1052

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
                  +  V I  ++      + ++G  DR+ + ++  V I DYKT   P +  A+   
Sbjct: 1053 --GPGSRAEVPIVGRLQRRGGPVLVSGQIDRLVVTET-EVLIVDYKTNHAPPRVEAEAPR 1109

Query: 934  D--PQLSLEAAAL 944
                QL+   A L
Sbjct: 1110 AYVRQLARYRAVL 1122


>gi|194434353|ref|ZP_03066617.1| exodeoxyribonuclease V, gamma subunit [Shigella dysenteriae 1012]
 gi|194417416|gb|EDX33521.1| exodeoxyribonuclease V, gamma subunit [Shigella dysenteriae 1012]
          Length = 1122

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 116/1086 (10%), Positives = 259/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDRENFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728
                   E     +  L  +   R   +N     S  +Q L+   G   +          
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 729  --------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPR 768
                            +    Q Y    R+       P   +          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGGRQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|209920270|ref|YP_002294354.1| exonuclease V subunit gamma [Escherichia coli SE11]
 gi|218555371|ref|YP_002388284.1| exonuclease V subunit gamma [Escherichia coli IAI1]
 gi|307310568|ref|ZP_07590216.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli W]
 gi|209913529|dbj|BAG78603.1| exonuclease V gamma subunit [Escherichia coli SE11]
 gi|218362139|emb|CAQ99748.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli IAI1]
 gi|306909463|gb|EFN39958.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli W]
 gi|315062128|gb|ADT76455.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli W]
 gi|320202464|gb|EFW77034.1| exonuclease V subunit gamma [Escherichia coli EC4100B]
 gi|323377292|gb|ADX49560.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli KO11]
 gi|324016324|gb|EGB85543.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 117-3]
          Length = 1122

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|332087358|gb|EGI92486.1| exodeoxyribonuclease V, gamma subunit [Shigella boydii 5216-82]
          Length = 1122

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 116/1086 (10%), Positives = 259/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDRENFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFLLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728
                   E     +  L  +   R   +N     S  +Q L+   G   +          
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 729  --------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPR 768
                            +    Q Y    R+       P   +          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGGRQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|239931604|ref|ZP_04688557.1| superfamily I DNA/RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291439976|ref|ZP_06579366.1| superfamily I DNA and RNA helicase [Streptomyces ghanaensis ATCC
            14672]
 gi|291342871|gb|EFE69827.1| superfamily I DNA and RNA helicase [Streptomyces ghanaensis ATCC
            14672]
          Length = 921

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 96/822 (11%), Positives = 210/822 (25%), Gaps = 121/822 (14%)

Query: 217  AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
             + +  +K T   +++     + P   +L+  +  H  GA +    D       W     
Sbjct: 214  LDLQRHVKETVKYVVVDEYQDTNPVQEQLIRGLTRH--GANLCVVGDDDQTIYQWRGSAV 271

Query: 277  KSTNITSSNTT--YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             +           +      +       +D+ R  V+R+          +    ++F   
Sbjct: 272  DNILTIEDRYPNVHRVTLNENFRSSSAIVDLARHVVERIPAGERLNKAMTAAGHQTFERG 331

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
            D       D  E +   + +    +  +   +                 +    + L  +
Sbjct: 332  DLLAQEFPD-TEAEATWLVERMERLRGVPFHDREGS--------EPRGLDWSDFAVLFRS 382

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
             +  A  +  EL   GI   I     L  T       +    +  L D   +        
Sbjct: 383  VKADAGPLVEELRSRGIPYVIKGLTKLFETPEVQAAVTCFRFVAGLADEQDVVD------ 436

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                        A   L    +R                           V     +   
Sbjct: 437  --------AWVDAGVGLAEGDVRAG-----------------------LPVLTAAMQWDA 465

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                 +  L    L+ +  +   +    +  G L   +  + +         D  R    
Sbjct: 466  SKPWDSTTLQGVFLEFLEAVELREERVPNERGELVYYNLGRFSTAI-----GDFERIHLT 520

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
               ++     +                            +         + + + I    
Sbjct: 521  SEPQQRFDAFAKWVEHQAP-----------------DYYEESDGDNGYAQPNAVVIATVH 563

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL--NLKTAEKYIGQAAHDFEMAN 692
            +++ + +  + L  L +  +P +      +  V++ +L                 F +A 
Sbjct: 564  QAKGMQWPAVFLPALRKNTFPASGRGGLGVFHVVEEELIPGAARYRGTEADERRLFYVAV 623

Query: 693  GT--RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
                ++L  + +  +       S +                             L     
Sbjct: 624  TRAQKYLALSFAPSDKRTGKKRSDFFNE-------------------ATGVHTVLTREVI 664

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                 R  P P         SFS++K L   PY+   R +   D     +        G 
Sbjct: 665  PSPDDRLTPTPRRGTPEVVMSFSDLKYLFECPYSFKLRLLYGFDSPLQKELG-----FGK 719

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
              H+++ E+ K+ I  +        + ++D H              R         +LE 
Sbjct: 720  SLHDVMAEIHKRAIEGDIATPEEA-EDLVDRHLNLPFANKAAADQLRPAAETAVRRYLER 778

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
                       +   P ++     G+ +TG  D I  L +    + D+K+    ++  A+
Sbjct: 779  HGATLHQTR--YSEQPVEIH-PVPGVTVTGRVDLIKRLDTNETSVVDFKSS---ERAQAE 832

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
             L   QL L     +  +    D  +V NL     K       + + +      +   ++
Sbjct: 833  DLTRDQLHLYVLGYRELTGQDADVVEVLNLD----KAGRDTREMVDPEVMTDLGKRVTEA 888

Query: 991  LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
              +L              +S L     S    ++  + R  E
Sbjct: 889  ADSLR----------TNRLSRLDNWCTSCASCDFAGICRSRE 920


>gi|170765547|ref|ZP_02900358.1| exodeoxyribonuclease V, gamma subunit [Escherichia albertii TW07627]
 gi|170124693|gb|EDS93624.1| exodeoxyribonuclease V, gamma subunit [Escherichia albertii TW07627]
          Length = 1122

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 117/1085 (10%), Positives = 265/1085 (24%), Gaps = 163/1085 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLGDPFEPE-----MILVQSTGMAQWLQMTLAQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+      L +          L+  
Sbjct: 63   PLPASFIWDMFVRVLPDIPKESAFNKQSMSWKLMSLLPQ----LLEHEDFTLLRHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                    L+   AD+ D        W          +           L  A   +T  
Sbjct: 119  NDKRKLFQLSSKAADLFDQYLIYRPDWLTQWEAGRLVEGLGEAQAWQAPLWKALVEYTNE 178

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            L + +           +          +     + I G +   P   + +  +  H    
Sbjct: 179  LGQPHW-HRANLYQRFIETLESATTCPSGLPSRVFICGISALPPVYLQALQALGKHIEIY 237

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297
            ++      +    I +              ++                            
Sbjct: 238  LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDIGN 297

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342
             LL        D   L +           +                +             
Sbjct: 298  PLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNLEE 357

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                +    +    + +      + + E   +   L   L+E+     +   ++ AD + 
Sbjct: 358  FSRSDNKRLLDPQDNSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417

Query: 399  ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                   +         +   IS      +        SLL+          +  L+  P
Sbjct: 418  YSPFIQAVFGSAPAERYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454  LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
            +    F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478  VLAARFDINEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537

Query: 505  VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                    S    + +  L  + +    + L+     +        + +W  +    L  
Sbjct: 538  ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLSIWRRGLAQERPLEEWLPVCRDMLNA 597

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
              L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598  FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                + I   +  R + F  + L G+N+GV+P+  A   F   +M          +    
Sbjct: 656  AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 712

Query: 684  AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727
                 E     +  L  +   R   +N     S  +Q L+   G                
Sbjct: 713  RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEELNCDES 772

Query: 728  -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
                                  + G+        L   ++          P     P T 
Sbjct: 773  EARVKEHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827
                +++    P   + +  L+++F     + PD       G   + I  +L+   + ++
Sbjct: 833  PLETLQRFWAHPVRAFFQMRLQVNFRTEESEIPDTEPFILEGLSRYQINQQLLNALVEQD 892

Query: 828  TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
              E      +   D                     +++   +      Q           
Sbjct: 893  DAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 940

Query: 887  AKMAIESIGIHLTG-----FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
             ++ ++  G+ +TG      AD +   +              P   +  +    QL LE 
Sbjct: 941  MEIDLDCYGVQITGWLPQVQADGLLRWR--------------PSLLSVAQG--MQLWLE- 983

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL-SEKSLKNLIEIVTL 1000
                             +L Y     K +         ++    L +E++L  L ++V  
Sbjct: 984  -----------------HLVYCASGGKGESRLFLRKDGEWRFPPLEAEQALHYLSQLVEG 1026

Query: 1001 LQNGE 1005
             + G 
Sbjct: 1027 YREGM 1031


>gi|323978563|gb|EGB73645.1| exodeoxyribonuclease V [Escherichia coli TW10509]
          Length = 1122

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 113/1084 (10%), Positives = 255/1084 (23%), Gaps = 161/1084 (14%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++  L+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEELMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                    L+   AD+ D        W       N  +           L  A   +T  
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWEAGNLVEGLGEAQAWQAPLWKALVEYTHE 178

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            L +             +                + I G +   P   + +  +  H    
Sbjct: 179  LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297
            ++      +    I +              ++                            
Sbjct: 238  LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342
             LL        D   L +           +                +             
Sbjct: 298  PLLASWGKLGRDYIYLLSDLEGSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                +    +    + +      + + E   +   L   L+E+     +   ++ AD + 
Sbjct: 358  FSRSDNKRPLDPLDNSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417

Query: 399  ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                   +         +   IS      +        SLL+          +  L+  P
Sbjct: 418  YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454  LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
            +    F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478  VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537

Query: 505  VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                    S    + +  L  + +    + L+     +        + +W  +    L  
Sbjct: 538  ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
              L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598  FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                + I   +  R + F  + L G+N+GV+P+  A   F   +M          +    
Sbjct: 656  AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 712

Query: 684  AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727
                 E     +  L  +   R   +N     S  +Q L+   G                
Sbjct: 713  RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772

Query: 728  -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
                                  + G+        L   ++          P     P T 
Sbjct: 773  EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827
                +++    P   + +  L+++F     + PD       G   + I  +L+   + ++
Sbjct: 833  PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892

Query: 828  TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
              E      +   D                     +++   +      Q           
Sbjct: 893  DAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 940

Query: 887  AKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
             ++ +   G+ +TG             G              P   +  +    QL LE 
Sbjct: 941  MEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWLEH 984

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
                A                           +  D +       +E++L  L E++   
Sbjct: 985  LVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSELIEGY 1027

Query: 1002 QNGE 1005
            + G 
Sbjct: 1028 REGM 1031


>gi|331684465|ref|ZP_08385057.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli H299]
 gi|331078080|gb|EGI49286.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli H299]
          Length = 1122

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDTETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQLG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|257075423|ref|ZP_05569784.1| UvrD/REP helicase [Ferroplasma acidarmanus fer1]
          Length = 924

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 121/1056 (11%), Positives = 250/1056 (23%), Gaps = 192/1056 (18%)

Query: 7    NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
             V      S     +    +   + +  + +         +     T++A +EL++   +
Sbjct: 23   RVIACP-GSGKTEVIAR-RVAKLIKDGEKPEG--------IVAITFTEKAAEELKTRIRK 72

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
            I   +    P     GD+             ++   +    R      ++   R      
Sbjct: 73   ILDVEC---PERADFGDMFTGTIHGFA---LDILRELDPYYRTF---DVLEDARRVAYVS 123

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADII---DIIETEEKKWEDLHALKNEKYGMWWLL 183
                Y      + +  A  +     ++  +   DI+  E+    +L              
Sbjct: 124  KSQNYYRRIGLVRLENAYGLKYYNVISQFLKSVDIMLMEQIDPGNLTN------------ 171

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGS 238
                       + + L E            L+       E  +L+      II+      
Sbjct: 172  --KEFAKCFADYMDSLKEDRYFDFATILYNLVYELKNNPEKINLITHRVRHIIVDEFQDV 229

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
                  L+  ++       V+   D       W           S+    +         
Sbjct: 230  DKLQNTLLELLSPVTESICVV--GDDDQGIYHWRGTDVGLIMNFSNPENSA--------- 278

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
                       +      +  +   S    ++        M     L+ K         D
Sbjct: 279  -----KCTDVALNTNFRSTRAVVELSRQFIENNGSRLPKGMTENPGLKRKYEE-----GD 328

Query: 359  VALIEADNEREEAISIAIALRMSLDENK------------KKSALITADRNLARRVKLEL 406
            +   E +NE++E   I   +   +  +                A++T     A+++   L
Sbjct: 329  IQSCEFENEKDELDFIVSKIGELVGTDFLDRNNKPFSLSLSDFAVLTRTNKWAKKIIDRL 388

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
             R GI     +G  +                                             
Sbjct: 389  DREGIPSVAYSGESIFERPEVEF----------------------------------ALH 414

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
            +        +R  K +Y + DL  L          +          S             
Sbjct: 415  SIAYTFECKIRYGKGNYRVPDLSELSGMYSRIFTIDHFPRADTGIFSRN----------- 463

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
                I  L     +  S      + D             +   R      +      LS 
Sbjct: 464  ----IAALRKEAEDILSKGTKDYLGDLGLQGFYHRILQAMGADRFDFGEKYNYNLACLSR 519

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS----TLFILGTLESRLLNFD 642
              S        ++A+ ++W      +           +       + IL   +++ L F 
Sbjct: 520  AISDYESVWIRLRASEVKWFFTFMGVYGKSEYTDPQHQDPSIINAVKILTIHKAKGLEFP 579

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
             + +         +   +N   + +  S+    T E         F      ++L  T S
Sbjct: 580  VVFVPDFI-KPNHRTPDRNFVDNVLYDSERYTGTDEDERRVYYTAFTR--SEKYLFMTWS 636

Query: 703  LRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
                    P     +L+ L     +      K R                        P 
Sbjct: 637  RFPEGGVRPRKHHPFLEELPEKYISGPMQLKKSRSGY---------------------PD 675

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
                    + S+SE+   +  P     R +   +              GT  HN++  + 
Sbjct: 676  RRTATGEYSTSYSELTSYLRCPNDFLLRNVYGYNAGVPAGFG-----YGTNIHNVLNMIH 730

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
            +  I          +  ++D  F        +    +    ++  S++    K  S    
Sbjct: 731  RDYIRNEKVPDMDEVVAMVDRMFHLRYATDAMSDNMKKAAERVVRSYVAEHSKDFS--RI 788

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDLL-KSG---FVDITDYKTGDNPKKETAQ----KL 932
            +      +  +      + G  D +      G    V+I D+KT      E         
Sbjct: 789  LETEKRFEFVLGEA--LIAGQIDLLKKTNPDGSLKEVEIIDFKT------EKIDGVYSAD 840

Query: 933  IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
             D QL   A A       +     V       L          +D +         K++ 
Sbjct: 841  YDRQLRYYALACLKSLNLKPQKAIVH-----HLDDDSITQVDISDVE-------LTKTVA 888

Query: 993  NLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             + + V  +   + P         K     +Y  L 
Sbjct: 889  EVGKTVDNILKKKFP----PSPESKKCDGCDYRKLC 920


>gi|299133347|ref|ZP_07026542.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2]
 gi|298593484|gb|EFI53684.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2]
          Length = 1163

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 85/805 (10%), Positives = 196/805 (24%), Gaps = 67/805 (8%)

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT--ARLMSTVANHPNGAIVLPG 261
                    + +  A+     +       ++  T    A    R +  V +         G
Sbjct: 394  KLDRGIDHVLIDEAQDTSPRQWDIIESFVSEFTAGAGARDIRRTVFAVGDEKQSIFSFQG 453

Query: 262  LDCHIPTAIWNTI-TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK--------R 312
                        + T  +    +  +    H   S A +LD +D    +           
Sbjct: 454  AAPREFDLRRRAMMTRHAHAKLAFESVSFKHSFRSGAAILDSVDYVFREQAIYKSIHNDD 513

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
               V + +   +  + + +   +       +  +     I     DV L        +A+
Sbjct: 514  AYPVHDALPDAAPAMVELWNLEEPDTREEIEGWDAPFDTISTTSPDVKLARRVTAEIKAL 573

Query: 373  SIAIAL-----RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
              A  +                 L+         V   L   GI +  +  + L+  +  
Sbjct: 574  IDAGTMTGTTGHRRKLRYGDVMVLVRRRGTTFDAVIQALKHAGIPVAGADRLKLTEHIAV 633

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN--ALELVALRGNKNSYDI 485
              L  L +A+    D +A+A  +K PL      +          +L             +
Sbjct: 634  IDLMHLADALLLPQDDLALAVALKSPLFGLDDDDLLAIAPARTGSLRAALQAHADTLPKL 693

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              +   ++     ++     P          +         IL+ + P            
Sbjct: 694  KSVNDFLMQ--CEKRFARVTPFAFFAWLLGGEGGGSGGRARILRRLGP-----------E 740

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
             N ++ ++ +L ++  +         +   W       +      + +    +  +  + 
Sbjct: 741  ANDALDEFLELALSYERKAAASLQGFIA--WLRAADTEVKRDMEILRDEVRVMTVHGAKG 798

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            ++     +   T  P   +   L ++          D ++  G               + 
Sbjct: 799  LEASVVFLVDTTTSPSDTQ--RLKLIRMAHGNAGPGDVVLWAGAKRDDTEAVAQARAAMR 856

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
               +                  +         +     +  N   +       L+  G  
Sbjct: 857  DDTEH-----------EYRRLLYVAMTRAAERLIVGGCKPGNRNNVRELSWYDLIDKGLG 905

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND---- 781
                 + +    +    R       +P         P    P          L       
Sbjct: 906  ASPLVMTEIETPFGPVRRYTRAGDVEPKVAEDVAAKPAAPAPLPDWLRASAPLEIPRERS 965

Query: 782  --PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
              P        L                RG   H ++  L     ++        + +  
Sbjct: 966  IAPSDASDDVSLPTLAPEAALLRQRARLRGQWVHRLLQSLPDIAPDQRKAAAERFLARHA 1025

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISH-SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
               F +      ++ + + +   I    F        +   +  V+I  ++ I +    +
Sbjct: 1026 QDGFNQ----DDLNQLAQQVVDLIGEPQFAAL----FAPGSRAEVSIAGRINIGNKIARV 1077

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
            +G  DR+ +     + I DYKTG  P +         QL+L  A L          R + 
Sbjct: 1078 SGQIDRLVITP-HDIIIVDYKTGPAP-RAETPPHYVRQLALYRAVLAKL----YPDRTIR 1131

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSA 983
                     +             +A
Sbjct: 1132 GALLWTETARMVEVPSATLDSGLAA 1156


>gi|312964902|ref|ZP_07779142.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 2362-75]
 gi|312290458|gb|EFR18338.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 2362-75]
          Length = 1122

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            + L +             +                + I G +   P   + +  +  H  
Sbjct: 177  DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D +   +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|309793869|ref|ZP_07688294.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 145-7]
 gi|308122276|gb|EFO59538.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 145-7]
          Length = 1122

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVMPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|284992622|ref|YP_003411176.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
 gi|284065867|gb|ADB76805.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
          Length = 1120

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 106/1027 (10%), Positives = 247/1027 (24%), Gaps = 132/1027 (12%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPA-----LLNGTLVENFRYDPLNPLLLASVTIYVPTKRA 56
             +++  V +     P              +   +      + + P     V     T++A
Sbjct: 48   SDEQARVVSAPADRPLVVVAGAGSGKTETMAARVCWLVANELVAPDA---VLGLTFTRKA 104

Query: 57   IQELRSEFIEITG--------------KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
              EL        G              + +  +P + +         +   L        
Sbjct: 105  ASELNERIRIRLGALSRHPETDPELKERLAVAMPTVSTYHGYAASLVSEHGLRIGVEPGA 164

Query: 103  --VSNIQRLLELARLILIWRNKLPDII--KDLYPESPLSLPISPANAIWLAKNLADIIDI 158
              +       + A ++  W   + D+        E  L+L          A  L      
Sbjct: 165  GVLGPAMCWGQAASVVSGWTGDMDDVQLTPLTTVEDVLALAGELGEHDITADRLRAWTAQ 224

Query: 159  IETEEKK-WEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASS-----PVG 209
            +E       +        +  +       A   L    + +  R     A        + 
Sbjct: 225  LERRIAGYPDAKGKRGPYRPVLEMLARQRARVALLPLVEAFEARKRAAGAIDHSDQVALA 284

Query: 210  YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +IA+   E     +     +++     +     R++  +     G  VL   D      
Sbjct: 285  ARIAVTAPEVGRRERARWRIVLLDEYQDTSVGQLRMLEALFGRTTGHAVLAVGDPRQSIY 344

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             W   +  +              +     L          +     V+  +    + +  
Sbjct: 345  GWRGASAGTIERFDRTFPGVRSREAQRLTLATSWRNDGAVLAVANAVAGLLPAPEVPLPD 404

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
                P       T  L   +    +  +D     A   R E       L    D     +
Sbjct: 405  LAPAPSAGHGLVTAGLYPTVAQETEALAD---RLAACWRGEDPV----LPPRADGRPPTT 457

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            A++   R     +   L   G+ + +     L      S + + L  +   +   A+  L
Sbjct: 458  AVLVRTRKQLPGIAAALRARGLPVTVVGLGGLLEVPEVSDVVATLTVLVDPSAGDAMGRL 517

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
            +     + G  +     ++    + + + ++   D    +      I    ++   P   
Sbjct: 518  LTGARWRIGPRDLAALESRARALVHSRKPDREDDDDTAPRPSERGSIVEALDDLGDPSAF 577

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
            S  +          + H+   +                  + D  ++     +       
Sbjct: 578  SPAAYRRLRRLAAELAHLRGRLG-----------ESLPDMVDDVARVLGLETELASAPGV 626

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                     +    +++ F+++ E  S      + ++        G           ++ 
Sbjct: 627  SPGSARAHLDALHAVAAEFTELAELPSLPAF--LGYLRDAEERERGLEPGEVAVDPESIQ 684

Query: 630  ILGTLESRLLNFDTLILGGLN-------------------------------EGVWPKNT 658
            +L    ++ L +D + + G+                                E    +  
Sbjct: 685  LLTGHSAKGLEWDVVAVPGMTADQFPSRTDTSDSWVKDPGAVPVDLRTTDREELPQLRLP 744

Query: 659  AKNPFLSRVMQSDLNLKTAEKYI----GQAAHDFEMANGTRHLIYTR--SLRENNIPTIA 712
                     +++ L     E        +    +      +HL+       RE   P   
Sbjct: 745  VPGSGDQAAVRAALEDYVEEWKRFGEAEEIRLGYVAVTRAKHLLLCSGSWWREGVKPNGP 804

Query: 713  SRWLQ--RLLVLGGTDFFDNLKKRGQ------CYLDWTRKLDYTTKQPHYKRPK------ 758
            S  L   R     G        +R +         +W   +         +R        
Sbjct: 805  SVLLDTVRRACSAGAGVVVAWAERPEEGATNPALEEWPVGMWPADPLSPPRRRALTAAAE 864

Query: 759  ------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI------------PHFK 800
                  P P   A        E+++ + D   +   R                       
Sbjct: 865  LVAGAAPHPLDAAAVLGTGDPEVERWVRDADLLLRERRRIARPTVEVPLPSHLSVSELVT 924

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH-- 858
               D  +        +         + T     L ++   +     +  P          
Sbjct: 925  LRRDPAELARRLRRPMPAAPAPLARRGTAFHAWLEERFSVARLLDLDELPGSGDESAAPD 984

Query: 859  -LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
                 +  +FL      +   + + V +P +  +    + L G  D +     G  ++ D
Sbjct: 985  GALTALQEAFLASPWADR---QPVEVEVPFETPL--GPLTLRGRIDAVFDDGGGGFEVVD 1039

Query: 918  YKTGDNP 924
            +KTG  P
Sbjct: 1040 WKTGPPP 1046


>gi|323188762|gb|EFZ74047.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli RN587/1]
          Length = 1122

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            + L +             +                + I G +   P   + +  +  H  
Sbjct: 177  DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVMPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAAQFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D +   +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|218706316|ref|YP_002413835.1| exonuclease V subunit gamma [Escherichia coli UMN026]
 gi|293406311|ref|ZP_06650237.1| exodeoxyribonuclease subunit V gamma [Escherichia coli FVEC1412]
 gi|298382047|ref|ZP_06991644.1| exodeoxyribonuclease V gamma subunit [Escherichia coli FVEC1302]
 gi|300898117|ref|ZP_07116483.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 198-1]
 gi|218433413|emb|CAR14315.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli UMN026]
 gi|291426317|gb|EFE99349.1| exodeoxyribonuclease subunit V gamma [Escherichia coli FVEC1412]
 gi|298277187|gb|EFI18703.1| exodeoxyribonuclease V gamma subunit [Escherichia coli FVEC1302]
 gi|300358175|gb|EFJ74045.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 198-1]
          Length = 1122

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 113/1084 (10%), Positives = 258/1084 (23%), Gaps = 161/1084 (14%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                    L+   AD+ D        W       N  +           L  A   +T+ 
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWEAGNLVEGLGEAQAWQAPLWKALVEYTDE 178

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            L +             +                + I G +   P   + +  +  H    
Sbjct: 179  LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297
            ++      +    I +              ++                            
Sbjct: 238  LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP---------------PDTSDMRNT 342
             LL        D   L +           +  +                           
Sbjct: 298  PLLASWGKLGRDYIYLLSDLEGSQELDAFVDVTPDNLLHNIQSDILELENCAVAGVNIEE 357

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                +    +    + +      + + E   +   L   L+E+     +   ++ AD + 
Sbjct: 358  FSRSDNKRLLDPLDNSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417

Query: 399  ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                   +         +   IS      +        SLL+          +  L+  P
Sbjct: 418  YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454  LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
            +    F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478  VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537

Query: 505  VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                    S    + +  L  + +    + L+     +        + +W  +    L  
Sbjct: 538  ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
              L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598  FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                + I   +  R + F  + L G+N+GV+P+  A   F   +M          +    
Sbjct: 656  AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 712

Query: 684  AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727
                 E     +  L  +   R   +N     S  +Q L+   G                
Sbjct: 713  RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772

Query: 728  -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
                                  + G+        L   ++          P     P T 
Sbjct: 773  EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827
                +++    P   + +  L+++F     + PD       G   + I  +L+   + ++
Sbjct: 833  PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892

Query: 828  TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
              E      +   D                     +++   +      Q           
Sbjct: 893  DAERLFRRFRAAGD--LPHGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 940

Query: 887  AKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
             ++ +   G+ +TG             G              P   +  +    QL LE 
Sbjct: 941  MEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWLEH 984

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
                A                           +  D +       +E++L  L +++   
Sbjct: 985  LVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGY 1027

Query: 1002 QNGE 1005
            + G 
Sbjct: 1028 REGM 1031


>gi|323359568|ref|YP_004225964.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037]
 gi|323275939|dbj|BAJ76084.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037]
          Length = 1095

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 104/843 (12%), Positives = 214/843 (25%), Gaps = 108/843 (12%)

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTV 249
                  RL  ++ +  V   + ++R        ++     +++     +      L+ST+
Sbjct: 284  YDREKIRLGVMDFADQVAGALRIVREHPAVVAELRARYRVVLLDEYQDTSVVQTDLLSTL 343

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 G  V+   D H     W   +  +     +  +     ++    LL         
Sbjct: 344  FG---GTGVMAVGDPHQAIYAWRGASAGNLGGFPAAFSPEGGCRHF--SLLTSWRNSARV 398

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            +     V   +  RS +                  +             V ++   +   
Sbjct: 399  LDVANAVLAPLADRSPI-----------------AVGALTSRPGAPDGLVEIVFERDLDT 441

Query: 370  EAISIAIA---LRMSLDENKKKS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            EA  +A     +R +     + +  A++   +    R    L R GI   I     L TT
Sbjct: 442  EADRVASWFAGIRAARQAEGRATTGAVLFRSKKHMVRFGDALGRRGIPHRILGLGGLLTT 501

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                 + S L  I       A+  L+  P    G  +                  +    
Sbjct: 502  PEVVDVVSALRVISDPEAGSALIRLLSGPRWAVGLADLRALAQLARRLATHDVALQPLEA 561

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
             +  +               +     +  +      +             V     ++  
Sbjct: 562  EVVDRLRATPGADRASLVDALDFLARQNDDHGWLADITPAGRARLREAGTVFAGLRRSIG 621

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                 +    +  +     +  +E R    +   +    +  +   +    S   A+ + 
Sbjct: 622  APIPELIRLIEAELRLDIELAANESRGPARIASAQLRAFVDEIRGFLAADESGSVASLLA 681

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK---- 660
            W+D   +  D    + +  +   + +L    S+ L +D + +  L     P         
Sbjct: 682  WLDHAEQ-ADEFAPRTEPPEDDVVQLLTIHGSKGLEWDAVAVVRLVTDELPSLPRDTKGW 740

Query: 661  ---NPFLSRVMQSDLNLKTAEKYIGQAA-------HDFEMANGTRH---------LIYTR 701
                   S        L T      +          DF +AN  R          + +TR
Sbjct: 741  LGFGILPSDFRGDAAWLPTLGWRGAETQQELKAAIDDFVVANRARQLDEDRRLAYVAFTR 800

Query: 702  SLRE----------NNIPTIASRWLQRLLVLGG-----TDFFDNLKKRGQCYLDWT---- 742
            +                P   S +L       G      +  ++     +  L W     
Sbjct: 801  ARDHLLLSGSTWSGTKKPRRPSVFLDEAAEALGSELVVGEAGEDPYDGERRLLHWPLDPL 860

Query: 743  --------RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR----- 789
                                   +P P L       +          P  + A R     
Sbjct: 861  GSRRTAVTAAAAEVVAARDAAPAEPDPDLALLLAERAARLQPVHAPAPTRIPASRFKDYV 920

Query: 790  -----ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                  +     P  ++   +T  GTLFH  + +           +   L +       +
Sbjct: 921  ADYGAAVDEVRRPMPERPYRQTRLGTLFHAWVEQRSGLVGAGVGLDDGGLWE-------D 973

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM---AIESIGIHLTGF 901
             +      D                 E    ++++ I V          ++     +   
Sbjct: 974  DDFGASAADAAELQRLRDC------FERSEWAALQPIEVETEIDFVTRRLDGREHVVICK 1027

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
             D +        +I D+KTG  P     ++    QL L   A  A     ++   VA LF
Sbjct: 1028 LDAVYRRGD-RYEIVDWKTGKPPATAEERRSRMVQLELYREAYHAKHGVPLESIDVA-LF 1085

Query: 962  YIR 964
            Y+ 
Sbjct: 1086 YVG 1088


>gi|218701536|ref|YP_002409165.1| exonuclease V subunit gamma [Escherichia coli IAI39]
 gi|218371522|emb|CAR19360.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli IAI39]
          Length = 1122

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 115/1086 (10%), Positives = 260/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728
                   E     +  L  +   R   +N     S  +Q L+   G   +          
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 729  --------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
                            +    Q Y    R+       P   +         Q   ++  E
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQQLPFTLPE 830

Query: 775  ------IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
                  +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|291447588|ref|ZP_06586978.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350535|gb|EFE77439.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 634

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 72/586 (12%), Positives = 132/586 (22%), Gaps = 64/586 (10%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TLVE+           A + +   +++A  ELR       G  +   P   +        
Sbjct: 65  TLVESVAARVNRGGDPARILVLTFSRKAAVELRDRMAARLG--AARGPQATTFHSYCYAL 122

Query: 89  FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
             A        +    +S  ++ + +  L+    +   +    L          +     
Sbjct: 123 VRAHQDADLFADPLRLLSGPEQDVTVRELLAGQLDLEKE---GLAQVRWPDELRACLTTR 179

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             A  +  ++          + L           W  AA FL         + V   A  
Sbjct: 180 GFADEVRAVLARSRELGLGPDALADFARRTGRPDWTAAAQFLAEYLDILDAQGVLDYAEL 239

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                +   R E    + G    + +     + PA  RL+  +A +   A          
Sbjct: 240 VHRAVLLAERPEVAAELAGRYDAVYVDEYQDTDPAQVRLLHALAGNQGRAPEYAQPTEKA 299

Query: 267 PTAIWNTITEKSTNITSS-----NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
             A                          +            D     V  L        
Sbjct: 300 RGAGARAGRTLIAFGDPDQSIYTFRGADVNGILDFPDTFRRADGSPAPVGVLTTSRRSGA 359

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
           G              + +    +  ++  +  +    V          E  +IA  LR +
Sbjct: 360 GLLAATRLLTRRMPLTRLPADTVRAHRELHAVRDGGRVETYTYPTASTELDNIADLLRRA 419

Query: 382 LDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNA 436
             E+     + + L+ A       V+  LT  G+ +++     PL      + L + L A
Sbjct: 420 HLEDGVPWQEMAVLVRAGGRSLPAVRRALTSAGVPLEVDGDDLPLRHEPAVAPLLTALRA 479

Query: 437 IF------------------------------------KLNDFMAIATLVKHPLAKFGFP 460
           +                                        D     TL+  PL      
Sbjct: 480 VATAALQCLPDLPDLPDLPDRSGLPDLPEGDPGEAGAPSWLDTETALTLLTSPLG--SMD 537

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
              L R   AL               D                  P             A
Sbjct: 538 AADLRRLGRALRDEERAAGIRIPAPSD---------ELLARALAEPERLVTHDPAYAHGA 588

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
             L   + +    L    T + +     + + W             
Sbjct: 589 QRLGALLRKARELLQGGGTAEEALWTLWNGTPWPGRLERAALRGGA 634


>gi|110642989|ref|YP_670719.1| exonuclease V subunit gamma [Escherichia coli 536]
 gi|191171233|ref|ZP_03032783.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli F11]
 gi|300995843|ref|ZP_07181275.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 200-1]
 gi|110344581|gb|ABG70818.1| exodeoxyribonuclease V gamma chain [Escherichia coli 536]
 gi|190908533|gb|EDV68122.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli F11]
 gi|300304698|gb|EFJ59218.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 200-1]
 gi|324011665|gb|EGB80884.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 60-1]
          Length = 1122

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            + L +             +                + I G +   P   + +  +  H  
Sbjct: 177  DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D +   +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDSEPFILEGLSRYQINQQLLNVLVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|157691776|ref|YP_001486238.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus SAFR-032]
 gi|251764506|sp|A8FBR1|ADDA_BACP2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|157680534|gb|ABV61678.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus SAFR-032]
          Length = 1234

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 125/1040 (12%), Positives = 278/1040 (26%), Gaps = 156/1040 (15%)

Query: 27   NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86
              T VE   + P     L+ V       R+ QEL    + ++ +     P          
Sbjct: 209  AQTKVEELPFYPYIKEDLSLVL------RSCQELLERALSLSKEPGGPAPRA-------- 254

Query: 87   EKFTADLLLSYNLNPPVSNIQRLLELA------RLILIWRNKLPDIIKDLY--PESPLSL 138
            E F  DL     L     + ++L EL       RL     ++   ++ +      +    
Sbjct: 255  ENFIDDLEQVNELIRHQDDFEKLYELLPNVNFKRLKTCKGDEYDPVLLEKATDARNQAKK 314

Query: 139  PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD----FLKIASKY 194
             +      +  ++ A  +  +   +   E L  L  +    +     +           Y
Sbjct: 315  QLEKLKDEYFMRSPAQHLKSLAEMKPIVETLVELVIQFGERFERAKQEKSIVDFSDLEHY 374

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
                L E +A         L+  EA    +     +++     +      ++  V+   +
Sbjct: 375  CLRILAEQDAEG------HLIETEAAKYYQQQFEEVLVDEYQDTNLVQETILKLVSKGEH 428

Query: 255  GAI--VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
             +   +    D       +                   H Q    +    +D+ +    R
Sbjct: 429  SSEGNLFMVGDVKQSIYRFRLAEPMLFLNKYK------HFQPDGKETGKRIDLNKNFRSR 482

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD------- 365
               + +  +    ++ ++       D +    L    P  +   +++ L+  D       
Sbjct: 483  SDVLDSTNFLFKQLMGETV-GEIEYDEQAELKLGASYPESKDTTTEMLLVHLDQQEAETG 541

Query: 366  -------NEREEAISIAIALRMSLDE---------------NKKKSALITADRNLARRVK 403
                     + EA  IA  ++  +++                 +   ++      A ++ 
Sbjct: 542  EEREELETVQFEARIIAKKIKELVEQPFQVYDAKQQMTRNLQYRDIVILLRSMPWAPQMM 601

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
             EL + GI +  +           S++ SLL  I      + +A +++ PL      E  
Sbjct: 602  EELKKQGIPVYANLSSGYFEATEVSVILSLLKVIDNPYQDIPLAAVLRSPLVHLDENELA 661

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
            L R  +                                   +  W+           +  
Sbjct: 662  LIRTSDKKGTYYDAVKAFMSVTHSDHPTCKKLERFF---QLLRKWRDFSINHSVAELIWE 718

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
            V    Q +  +      K       ++ D  K              R +  +    +   
Sbjct: 719  VYRDTQYLDYVGGMPGGKQRQANLRALYDRAKQYEKAAFRGLFRFLRFIERMQERGDDLG 778

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITR------------------LIDGETVKPKIEKS 625
             +  FS+  +    +  ++ + ++                      L+D E         
Sbjct: 779  AAKTFSETEDVVRMMTIHSSKGLEFPVVFTVGLGRNFNMMDLNQSYLLDKELGFGSKYIH 838

Query: 626  STLFILGTLESRL--------------LNFDTLILGGLNEGVW------PKNTAKNPFLS 665
              L I       +              L    + L    E ++       +  A + + +
Sbjct: 839  PELRISYATLPLVAMKKKMRKELLSEELRVLYVALTRAKEKLFLVGSVKNQVKALSKWQN 898

Query: 666  RVMQSDLNLKTAEKYIGQAAHDF-------EMANGT-----RHLIYTRSLRENNIPTIAS 713
                 +  L   E+Y  +   DF         A  +       ++ +         T AS
Sbjct: 899  AATGEEWLLPDFERYQSKTYLDFIGPALIRHQAMSSVLEETGDVVLSHPSTFTISFTQAS 958

Query: 714  RWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
              L+  + L     D        G     +    +   ++  +K P          ++ S
Sbjct: 959  DLLKEDMSLEKKEQDEIVQALMDGLPVEGYGDADEKVAERLSWKYPYLAASQVGTKQSVS 1018

Query: 772  FSEIKQLINDPYAVY-----ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
              +  + I D Y+V      AR  L        KK     ++GT  H ++  +       
Sbjct: 1019 EIKRMKEIQDEYSVPSSIRKARATLYDRPAFMKKKTLTAAEQGTAMHTVMQHIPLPSEEP 1078

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                    +   +            +  I +     I+  F     +     + +   + 
Sbjct: 1079 YDESRIGHLLDSLQQ--RDLLTDEQVQSINQ---EGIAAFFSTSIGQKLLKADWVKREVS 1133

Query: 887  AKMAIE-----------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK------ETA 929
              M +               + + G  D +     G + + DYKT     +         
Sbjct: 1134 FSMVLPVKEVYSHIDTEGEPVLIQGMIDCLFET-DGKLYLLDYKTDRVQGRYTGGIDAAV 1192

Query: 930  ---QKLIDPQLSLEAAALKA 946
               +K  + Q++L A A++ 
Sbjct: 1193 PILKKRYETQIALYAKAVER 1212


>gi|193212682|ref|YP_001998635.1| exodeoxyribonuclease V subunit gamma [Chlorobaculum parvum NCIB
           8327]
 gi|193086159|gb|ACF11435.1| exodeoxyribonuclease V, gamma subunit [Chlorobaculum parvum NCIB
           8327]
          Length = 1065

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 108/939 (11%), Positives = 233/939 (24%), Gaps = 94/939 (10%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
           +  L++            +P       I V ++   + L        G  +         
Sbjct: 10  LETLVSAFGDMVAASPLASP--FEREWIVVQSRGMQRWLSMRLAAQFGVWAGA--EYPFP 65

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             +V+  F    L         S       L RL+     +   +       + L     
Sbjct: 66  NALVQRLFEWLELSKQADTERFSKESICWSLMRLLPGLLERDSFVPL----RAYLDGDRD 121

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 L   + D  D                N+     W           + W   + E
Sbjct: 122 GLKLFQLCGRIGDTFDQYTLFRPGLLSAWETGNDDAARDWQP---------ELWRTLIAE 172

Query: 202 LNASSPVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                    + A +R      L       I + G +   P    ++  +A      + L 
Sbjct: 173 SAGKHRGQLKAAFIRKLKNAELPDDFPKRISLFGVSYMPPFHVEMLQALAARIPVNLFLL 232

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
                  T I +       + +    +   +P      LL  L     +   L      +
Sbjct: 233 SPTREFWTDIVSRRRLFRMSESERALSMEGNP------LLASLGKSGREFAELLLEVGNV 286

Query: 321 YGRSMVISKSFLPPDTSDMRNT------DILENKIPNIQKCFSDVALIEADNEREEAISI 374
            G   +            +++       D  E K P        V +    N   E   +
Sbjct: 287 KGEHEIYDDPSTETLLRAVQSDMLNLRGDATEAKHPAPDASDRSVQVHSCHNPLREVEVL 346

Query: 375 AIALRMSLDE----NKKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424
              L   L+       +   ++T D          +          +   I+    L   
Sbjct: 347 HDNLLDLLNRVPSLEPRDIVVMTPDIETYAPYIATVFGAAGNGEPRLPHSIADRRMLDEG 406

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNS 482
             +  +  LL      +   A+  LV  P    +F   E+ L   +  +E   +R   + 
Sbjct: 407 GVAPAMLKLLELYGSRHTAPALFDLVSSPPVSRRFRLGEEELDTVRRWIEETRIRWGMDE 466

Query: 483 YDIMDL------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                L      ++     +        +P                  + + +    +  
Sbjct: 467 RSRSSLGLPPFRENSWRAGLERMLLGYAMPDEGRLFDGVLPFEVAGDAETLGKLADFIDA 526

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                        + +W +  +  L++    +      L   ++     +  ++      
Sbjct: 527 VDQLSKRFSRPRPLGEWREHFLWILESFIEADADSERELAHVKKEIDSLTALAEHSNFAG 586

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             + +A   I  +   ++   +         +     L  R + F  + + G+N+G +P+
Sbjct: 587 --EVSAQVMIAWLRGRLEQFEMGLGFMTGG-ITFCAMLPMRSIPFRVVAMIGMNDGAFPR 643

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRE--NNIPTIAS 713
                 F     +     ++            E     R +   +   +   +N P   S
Sbjct: 644 QQRPPGFDLLARKPRKGDRSVRGDDRY--LFLESILSARDVLYLSYVGQSVRDNSPLPPS 701

Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD--------------------------Y 747
             +  LL      F     +     L    +L                            
Sbjct: 702 VLVSELLDAVERGFEFPDGEDASSRLVVQHRLQGFSPAYFTKGSPLFSYSVENFRALAGR 761

Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF---IPHFKKDPD 804
            +        +P   L  + RT +  ++ +   +P A +  R L L          +   
Sbjct: 762 NSLDTRPFIEEPLDGLTDEERTVTLDDLARFFANPAAFFLERRLGLKPSSAAEPLGEREP 821

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
               G   + +  EL++  +          M  +  S       P     +         
Sbjct: 822 FEAVGLERYAMRQELLEALLEGRDG---RAMLPLFRS--RGLLPPATHGELLFRKLLAEV 876

Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
             F E  ++++       +     + ++  G  LTG  D
Sbjct: 877 EEFAEKVQELKGGGTFSQL----DIDLDIGGFRLTGTLD 911


>gi|238792778|ref|ZP_04636409.1| Exodeoxyribonuclease V gamma chain [Yersinia intermedia ATCC 29909]
 gi|238727886|gb|EEQ19409.1| Exodeoxyribonuclease V gamma chain [Yersinia intermedia ATCC 29909]
          Length = 1123

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 113/987 (11%), Positives = 238/987 (24%), Gaps = 140/987 (14%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL+    ++N               + V +    Q L+ +  +     + I 
Sbjct: 11  DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANIE 61

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
                L           +L         S      +L  L+      L +       +  
Sbjct: 62  ---FPLPATFIWDMFTRVLPGIPKESAFSKDAMTWKLMWLLP----DLLESPVFSPMKRY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIA 191
           LS          LA  +AD+ D            WE    + N      W        + 
Sbjct: 115 LSDDNDKRKIHQLAARVADLFDQYLVYRPEWLASWERGQLIDNLDDAQQWQATLW---VE 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249
              +T +L +             +R   E           + I G +   P   + +  +
Sbjct: 172 LTNYTRQLEQPEW-HRANLYQRFIRTLLESDSCPAGLPKRVFICGISALPPIYLQALQAL 230

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HP---------- 292
             H +  ++      +    I +                 +       HP          
Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYRESIEVNLFRHPEQAKQLFNAN 290

Query: 293 --QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349
             Q     LL        D   L +  +++      +             +   LE+   
Sbjct: 291 GEQELSNPLLASWGRLGRDHMYLLSQVDDIQEVHAFVDIDPDNLLHGIQHDMLELEDHAI 350

Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391
                           +      ++L    + + E   +   L        +   +   +
Sbjct: 351 IGTTAESLAHSDQKRRLDIRDRSLSLHVCHSPQREVEVLQDNLLNLFSTNPELTPRDVIV 410

Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
           + AD +                  +   IS               +LL+          +
Sbjct: 411 MVADIDSYTPYIQATFGNATGERYLPFAISDRKASQAHPALQAFITLLDLPQSRFTSEQV 470

Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497
             L++ P     F   E  L R +  +    +R   +  ++ +L        +       
Sbjct: 471 LALLEVPALASKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWHFGITR 530

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556
                               + +  L   +   +   L+     +       ++S+W  L
Sbjct: 531 MLLGYAMDSTAGDWRGVLPYDESSGLAAELAGQLADMLMQLSQWRQQLSEPRALSEWLPL 590

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L      ++     L   E  +    + S  I              D +   +D E
Sbjct: 591 CRQLLDTFFEPDNDTEAVLVLIE--QQWQKVISYGIAAQYPDVVPLNLLRDELASRLDNE 648

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P+      F   +M   +    
Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMAKQVRRGD 705

Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD------- 726
             +         E      + L  +   R   +N     S  +  L+             
Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSELIEYISQSYHLPGDE 765

Query: 727 -----------------FFDNLKKRGQCYLDWTRKLDYTTKQPHYK----RPKPFPPLEA 765
                            +   +    + ++  +    Y  +         RP P      
Sbjct: 766 MLNADESAQRVIQHLLCWHARMPFAAENFIQHSELQSYAAEWLPSAESKGRPHPEFNQPL 825

Query: 766 QPRTYS---FSEIKQLINDPYAVYARRILKLDF-------IPHFKKDPDRTDRGTLFHNI 815
            P   S     E+ +    P   + +  L ++F               D  +R      +
Sbjct: 826 SPEPLSEITLDELIRFYRHPVRAFFQLRLGVNFVIEETELPDEEPFTLDNLNRYQFNTQL 885

Query: 816 ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
           +  LI +    +          +    F +             L  +I    LE+     
Sbjct: 886 LNALIDEGDINSVFARARAAGTLPYGSFGEL-YWESQQEEMVPLAEQIRSERLEYH---- 940

Query: 876 SSIEKIFVNIPAKMAIESIGIHLTGFA 902
                       ++ IE   I LTG+ 
Sbjct: 941 ----------SIELNIELGDITLTGWI 957


>gi|300023817|ref|YP_003756428.1| double-strand break repair helicase AddA [Hyphomicrobium
            denitrificans ATCC 51888]
 gi|299525638|gb|ADJ24107.1| double-strand break repair helicase AddA [Hyphomicrobium
            denitrificans ATCC 51888]
          Length = 1196

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 93/851 (10%), Positives = 195/851 (22%), Gaps = 90/851 (10%)

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAE---------HLMKGTKGPIIIAGSTGSI 239
             I    +TE      A       +                   + G    I++  +  + 
Sbjct: 366  GIILHRYTEARRSAGALDFADLILKTKSLLEGDGGQAQWVLFKLDGGLDHILVDEAQDTS 425

Query: 240  PATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            P    ++  +A            +   V    D       +     K             
Sbjct: 426  PEQWDIVKALAHEFFMGAATRDGSPRTVFAVGDEKQSIYSFQGADPKMFADAGIRFAALA 485

Query: 291  HPQY----------SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                          S   +   L                  G       +        + 
Sbjct: 486  RDAGLIWKSIELTMSFRTVTPVLAAVDAVFADAAKTPGLTAGGPPPKHNAIRLGHAGLVE 545

Query: 341  NTDILENKIPNIQKCFSDVALIEADNER-EEAISIAIALRMSLDE------------NKK 387
                 +    N    ++ ++     +     A  IA  ++  LD                
Sbjct: 546  MWPTEKPDDLNAADPWAPLSDTSEHSPANRLAERIADTIKGWLDRGERLESQGREIRAGD 605

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
               L+      A  +   L R GI +  S  I L+  +    L +L + +    D +A+A
Sbjct: 606  ILILVRKRNPFAVPMVAALKRRGIAVAGSDRIALTDQIAVQDLMALGDFLILPEDDLALA 665

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             ++K P+  F   +          + +      ++    + +         +      P 
Sbjct: 666  AVLKGPIFGFDDDDLLAIAPGRKSKTLWSALLDSTGVKPEYRDAAETLKRWRAKADFTPP 725

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
            ++   S  D++ A    + +L+ + P      ++                   L  +   
Sbjct: 726  FEFFSSVLDRDGAR---EKMLRRLGPEAADVIDEFLDLALSYDDGTPPSLTQFLAELRAI 782

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI---DIITRLIDGETVKPKIEK 624
                  ++    +   + ++          +           D+    +   +  P+ + 
Sbjct: 783  APEVKRDMDHGRDEVRVMTVHGAKGLEAPIVFLPDTCTTASGDLSAASLVRLSGLPRPDH 842

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
                 +     +  L   T+   G       +            +  L +   E   G+A
Sbjct: 843  IPEPIVWTVKGTSRLEAVTIARRGREAREHEERNRLLYVAMTRARDRLYIAGFEGKKGRA 902

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
               +  A      +   +   ++      R          T     L +           
Sbjct: 903  ESCWYDAI--SEALLPVAEEIDDNGKKVWR--------IETAQTAELDQSRGEKTRQLES 952

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
             +         RP+P   +   P                +  A      D       + +
Sbjct: 953  EERPAFASERARPEPKLSVPLAPSRLEPYAPDAEGEPIMSAKADAAATYDAPSPLAGNSE 1012

Query: 805  RT-DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
                RGTL H ++  L               +            +     ++ R     I
Sbjct: 1013 HRFLRGTLTHALLQHLPS-------------VAASGREAIATAFVAKRGAVLSRKARDGI 1059

Query: 864  SHSFLEHEEKIQSSIEKIF-----VNIPAKMAIE-----SIGIHLTGFADRIDLLKSGFV 913
                L       +    +F       +P    I         + L+G  DR+ +     V
Sbjct: 1060 VRETLA--ILSSADFAPLFGPNSMAEVPIAAVIPRPSGSGPALDLSGQIDRLAVTDD-EV 1116

Query: 914  DITDYKTGDNPKK--ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
             I DYKT   P             QL+    AL          R+V          +   
Sbjct: 1117 LIVDYKTNRPPPSEVRFVAPAYLYQLAAYRLAL----GEIYPGRRVKAALLWTDGPRLME 1172

Query: 972  DCITNDKKKYS 982
                      S
Sbjct: 1173 VPADVLDGYQS 1183


>gi|187777518|ref|ZP_02993991.1| hypothetical protein CLOSPO_01109 [Clostridium sporogenes ATCC 15579]
 gi|187774446|gb|EDU38248.1| hypothetical protein CLOSPO_01109 [Clostridium sporogenes ATCC 15579]
          Length = 1147

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S +++    P+A + +  LK      F       D G   H+I+ +   +   +  
Sbjct: 774  KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKEGL 831

Query: 829  PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875
                         + ++I+   + ++L          +      KI     +L  E   +
Sbjct: 832  EWNTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891

Query: 876  SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTGD 922
             + +  +  +   +  +             ++L G  DR+DLL K G     I DYK+G 
Sbjct: 892  GNFKPSYYELSFDVDGDYPPIAMELHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSGT 951

Query: 923  NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               K       +  QL +   A L   +       +   L Y++L      D I  +   
Sbjct: 952  KEFKLSDVYYGLQLQLLIYLDAILTELAERSGVNGEPGALLYLKLD-----DPIVKNTVD 1006

Query: 981  YSADELSEKSLKNLI 995
             S +E+ +  +KNL 
Sbjct: 1007 ISDEEIEKNIIKNLK 1021


>gi|188584140|ref|YP_001927585.1| double-strand break repair helicase AddA [Methylobacterium populi
            BJ001]
 gi|179347638|gb|ACB83050.1| double-strand break repair helicase AddA [Methylobacterium populi
            BJ001]
          Length = 1147

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 88/845 (10%), Positives = 200/845 (23%), Gaps = 60/845 (7%)

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGM 179
                 ++ +     PL   +  A A+   + L  +   I    E +   L AL  +    
Sbjct: 315  EVKQALLDEQARLIPLFDSLRAARALARTQGLFRLAAEIHRRVEAQKTRLGALDFDDLIH 374

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
                  D L      W    ++      +           +            A   G+ 
Sbjct: 375  ---KTLDLLSRVGASWVLYKLDRGVDHVLV--DEAQDTNPQQWEILRTLTAEFAAGEGAR 429

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
              T      V +         G D              +          S    +  A  
Sbjct: 430  GLTRTRF-AVGDPKQSIYSFQGADPREFELTRRAWERAAKGAELDFADVSLRLSFRTASH 488

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            +         V       +   G    +  S        +    I E         ++  
Sbjct: 489  VLAAVDAVFRVPEHFAGLSFEAGTPGTVHASARAGVPGAVELWGIEEPAEAEEPDAWA-- 546

Query: 360  ALIEADNEREEAISIAIALRMSLDEN-------------KKKSALITADRNLARRVKLEL 406
            A ++A      AI  A  +  ++                     L+         V   L
Sbjct: 547  APVDAPEPNAPAIVTARRIARAVKAWTTRGDACGRVWRPGDVLILVRKRSAAFEEVIRAL 606

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
               G+ +     + ++  +    L ++  A     D + +AT +K PL      +     
Sbjct: 607  KGLGVPVAGQDRLEVAGHIAVLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRIC 666

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
            A+               +  D  ++               +               L+  
Sbjct: 667  ARRPFSETLEDALTRHAEAGDAAAIRGLAALRLWIRLAAEN-------GPFGFYAALLGP 719

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
                   +                      T      +       +        G ++  
Sbjct: 720  HGGRSRLVARLGGEAGDAIDVFLAQAAEAETGGDAPCLEAFLADYVVRPGRGRSGLSVKR 779

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
                  +    +  +  + ++    ++              L +    +  L        
Sbjct: 780  DLEAGRDEVRVMTVHGAKGLEAPVVVVIDGCEPLGRNDPPLLGLDPAADGPLPP------ 833

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
                  VW     ++   +   +S L  +  E++         M     HL+        
Sbjct: 834  ------VWTGGRTQDCAATLAARSALQARAREEHNRL--LYVAMTRAADHLVIAPYRGAT 885

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP-PLEA 765
                 +   + R+ +  G    + ++        W      +          P P  +  
Sbjct: 886  RETPASWCEMVRIGLERGLGPGEAIETEHGPITIWRDGSAASLAAAAEATALPEPEAVPD 945

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
               + +  E +       +                 D +   RG L H ++  L +    
Sbjct: 946  WLFSNAAPEAEAAPPLSPSGALGAADGQRQPQRRLGDAEARRRGALVHALLEHLPRIEPA 1005

Query: 826  KNTPEIN---HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
            +               +D     + +   + +I       +  +    E           
Sbjct: 1006 RRAEAAERFTRARAPALDEGKRTDLVRSVLRLIETPDLAPLFSAQARAEVA--------- 1056

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-AQKLIDPQLSLEA 941
              +  ++ ++ +   +TG  DR+ +++ G V + D+KTG  P  +    +    Q++L A
Sbjct: 1057 --LSGRIVVDGVERDVTGRIDRL-VVEDGRVILCDFKTGRPPADDAPLPEREAAQVALYA 1113

Query: 942  AALKA 946
                A
Sbjct: 1114 RLAAA 1118


>gi|158521071|ref|YP_001528941.1| exodeoxyribonuclease V, gamma subunit [Desulfococcus oleovorans
           Hxd3]
 gi|158509897|gb|ABW66864.1| exodeoxyribonuclease V, gamma subunit [Desulfococcus oleovorans
           Hxd3]
          Length = 1085

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 91/925 (9%), Positives = 238/925 (25%), Gaps = 91/925 (9%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A  TI V +    + L  E    TG  +            + +        +  ++P 
Sbjct: 28  PFARETIVVQSMGMKRWLSMEMARHTGICA--HNRFLFPNAFLNQMLQTAFADAVPVSPD 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V        +  ++             L P               LA  +AD  D     
Sbjct: 86  VGVEAMTWAVFPVLADVFA-----HPALSPLQAYLQDGDVIKRYQLAARIADTFDQYLVF 140

Query: 163 EKK--WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +             W      L + S+ W E+  E         Q   +     
Sbjct: 141 RPDMLLQWEAGALPADPHEKWQAHLWRL-LISQGWAEQRAER------WKQFLSLAQSGA 193

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE---K 277
                    + + G +       ++ + ++        +     H    I +T  +   +
Sbjct: 194 LAGSTLPSRVSVFGISTLPRFHVQVFAALSAFLEVRFFVLNPCRHYWGDILSTYEKKQVE 253

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +          + H +   + L     + R+    + +  ++         ++ +     
Sbjct: 254 TGADARDIPEAARHLETGNSLLASMGMVARDFFAMVEDHPHQETSLFAPAGETTMLACLQ 313

Query: 338 DMRNTDILENKIP--NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSAL 391
           +               +    + + +    +   E  ++   L    + +     +   +
Sbjct: 314 NDILDLKDAADQERVRVDGNDASMQISVCHSPMREVEALHDNLLAMFEADAGLSPEDVLV 373

Query: 392 ITADRNLARRVKLELTRFG-------INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
           +  +  +       +   G       +   ++     S +        L++         
Sbjct: 374 MAPNMEVYAPYVEAVFDAGADDGGQRVPYTVTDRRSKSGSPVVRTFLGLMDLWESRFGIS 433

Query: 445 AIATLVKHPLAKFGFP--EKYLSRAKNALELVALRGN--KNSYDIMDLKSLVLDRIATQK 500
           A+  +++    +  F   E    R    L    +R           DL     +      
Sbjct: 434 AVLEILESAFVRERFDIGEAEFFRISQWLVDAGVRWGLDGAFKTDRDLPEFSENTWKQGI 493

Query: 501 NNTHVPHWQSRLSEEDKELAVLL-------VDHILQCITPLVTYKTNKNSTCGNLSISDW 553
           ++  +    +   E   +  +         VD + + +              G  +   W
Sbjct: 494 DSLVLGCAMAGKGEILFDGLLPYDHMEGSDVDSLEKFLAFWHVLLRFYRQCGGAHAPGRW 553

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            ++    ++++   +     +L  +     L++L       G     +     + + R  
Sbjct: 554 RQILTALVESMFAADPAVEADL--QVITDALNALGESAAHAGFDGPVDLPVIREFLNRRF 611

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
           +G+           +     L  R + F  + L G+N   +P+ T    F          
Sbjct: 612 EGQAYGAPFISG-GVTFCSMLPMRSIPFAVICLLGMNVDDYPRQTFSPGFDMIRKHPRPG 670

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNL 731
            ++ ++   +      + +  R L  +    +  +N     S  +  L       F    
Sbjct: 671 DRS-KRNDDRYLFLETLLSARRRLYISYVGHDMRDNSDRPPSVLVGELCDYLRERFDAGP 729

Query: 732 KKR-----------------------------GQCYLDWTRKLDYTTK-QPHYKRPKPFP 761
                                              YL   R+L      +P    P    
Sbjct: 730 LTDVVEKITTHHRLQPFHPDYFSSDTQARFSYAADYLAAARQLAGGRPGRPAALEPAVPV 789

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH---FKKDPDRTDRGTLFHNIITE 818
           P  A P+T    ++ +    P   +  + L L         ++       G   +++   
Sbjct: 790 PDNADPQTIEVEDLCRFFAHPARYFLTQRLGLRVAETDRIPEEAEPFEVAGLERYDMARR 849

Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
           L+++ + ++       ++  + +     +  P   +         +  F+     + ++ 
Sbjct: 850 LVERLLAEDPAAP---LENALRASGILPHGEPGKRLFE--RLKTGAAGFVAGVRAVTANG 904

Query: 879 EKIFVNIPAKMAIESIGIHLTGFAD 903
                     + ++  G  L G  D
Sbjct: 905 GLDRRE----IRLDINGTTLCGTLD 925


>gi|313144298|ref|ZP_07806491.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129329|gb|EFR46946.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 757

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 85/541 (15%), Positives = 161/541 (29%), Gaps = 66/541 (12%)

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
              +  H  ++              L + + +C    +    +  S+  ++    + ++  
Sbjct: 270  LLDKGHNFNFAMGKDIRLSAAYKRLEELLQECAENALDMGLDSESSLKSMGAKSYVQICE 329

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                 +   + R+   +  E  G+ L             +  +A E  DI++ L++    
Sbjct: 330  MIQNAIAPCDDRQSKKVR-EYVGELLFIW--------GGLNLSACELGDILSFLLEELAQ 380

Query: 619  KPKIEKSST-LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            K   +     + ++G LESR   +   ++   N+ V P  +  + FL+  ++S L + T 
Sbjct: 381  KSIDDIHGGKIRVMGVLESRGFAYKKAVIVDCNKDVIPNVSENDLFLNSRLRSALKMPTL 440

Query: 678  EKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                    H +         +       E+     AS  L  L               G 
Sbjct: 441  RDKEQLQKHYYYGVFSTANEVAVAFVENEDK---QASPLLDEL-----AQKTKVSYYNGD 492

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                   +                      P   + S +K  ++ P   Y   I ++   
Sbjct: 493  LLFSLLPQGRKLA-------YCEDKFFGKMPEVLTPSRLKVFLDCPRKYYYIYIEQMS-- 543

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
                   D    G   H  +  + +  + KN       +    +S  +  +L      + 
Sbjct: 544  ---GAGSDNASLGNALHQCLESVYQPYVGKNLRLDMSEIVSNTESWLDDFSL-KAESALS 599

Query: 857  RHLFHKI---SHSFL--EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
            R     +      F    +  + QS IE + +     M +E  G       DRI  +   
Sbjct: 600  RAEIELLKCELRKFFTQANLSEKQSEIEILQLE-GQNMNLELKGFSFYMRPDRIQRVGE- 657

Query: 912  FVDITDYKTGDNPKKE-TAQKLIDPQLSLEAAALKAGSFSQIDCRK---VANLFYIRLKQ 967
             V+I DYK   N   +              A  L   +F Q +         L+Y  ++ 
Sbjct: 658  IVEIIDYKYRRNFDTKHDMANDF-------AMNLYDFAFKQSNSVYKNLPICLYYWDIRG 710

Query: 968  KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHL 1027
                       +K    E  EK L+ L E+      GE  F      S K     E+  L
Sbjct: 711  G---------VQKSELQEKGEKLLEKLTEL-----QGEIEF--SKAESRKPCRYCEFVDL 754

Query: 1028 A 1028
             
Sbjct: 755  C 755


>gi|224437849|ref|ZP_03658796.1| hypothetical protein HcinC1_07745 [Helicobacter cinaedi CCUG 18818]
          Length = 771

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 85/541 (15%), Positives = 161/541 (29%), Gaps = 66/541 (12%)

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
              +  H  ++              L + + +C    +    +  S+  ++    + ++  
Sbjct: 284  LLDKGHNFNFAMGKDIRLSAAYKRLEELLQECAENALDMGLDSESSLKSMGAKSYVQICE 343

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                 +   + R+   +  E  G+ L             +  +A E  DI++ L++    
Sbjct: 344  MIQNAIAPCDDRQSKKVR-EYVGELLFIW--------GGLNLSACELGDILSFLLEELAQ 394

Query: 619  KPKIEKSST-LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            K   +     + ++G LESR   +   ++   N+ V P  +  + FL+  ++S L + T 
Sbjct: 395  KSIDDIHGGKIRVMGVLESRGFAYKKAVIVDCNKDVIPNVSENDLFLNSRLRSALKMPTL 454

Query: 678  EKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                    H +         +       E+     AS  L  L               G 
Sbjct: 455  RDKEQLQKHYYYGVFSTANEVAVAFVENEDK---QASPLLDEL-----AQKTKVSYYNGD 506

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                   +                      P   + S +K  ++ P   Y   I ++   
Sbjct: 507  LLFSLLPQGRKLA-------YCEDKFFGKMPEVLTPSRLKVFLDCPRKYYYIYIEQMS-- 557

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
                   D    G   H  +  + +  + KN       +    +S  +  +L      + 
Sbjct: 558  ---GAGSDNASLGNALHQCLESVYQPYVGKNLRLDMSEIVSNTESWLDDFSL-KAESALS 613

Query: 857  RHLFHKI---SHSFL--EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
            R     +      F    +  + QS IE + +     M +E  G       DRI  +   
Sbjct: 614  RAEIELLKCELRKFFTQANLSEKQSEIEILQLE-GQNMNLELKGFSFYMRPDRIQRVGE- 671

Query: 912  FVDITDYKTGDNPKKE-TAQKLIDPQLSLEAAALKAGSFSQIDCRK---VANLFYIRLKQ 967
             V+I DYK   N   +              A  L   +F Q +         L+Y  ++ 
Sbjct: 672  IVEIIDYKYRRNFDTKHDMANDF-------AMNLYDFAFKQSNSVYKNLPICLYYWDIRG 724

Query: 968  KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHL 1027
                       +K    E  EK L+ L E+      GE  F      S K     E+  L
Sbjct: 725  G---------VQKSELQEKGEKLLEKLTEL-----QGEIEF--SKAESRKPCRYCEFVDL 768

Query: 1028 A 1028
             
Sbjct: 769  C 769


>gi|215488140|ref|YP_002330571.1| exonuclease V subunit gamma [Escherichia coli O127:H6 str. E2348/69]
 gi|215266212|emb|CAS10639.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli O127:H6
            str. E2348/69]
          Length = 1122

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            + L +             +                + I G +   P   + +  +  H  
Sbjct: 177  DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D +   +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLTCNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|91200828|emb|CAJ73882.1| hypothetical protein kuste3125 [Candidatus Kuenenia stuttgartiensis]
          Length = 1099

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 97/300 (32%), Gaps = 44/300 (14%)

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFK--KDPDRTDRGTLFHNIITELIKKRINKNTP 829
             + ++     P+  + R IL+L+ +   +  +       GT++H I+  L      K   
Sbjct: 775  PTMLETFGACPFQFFMREILQLEPLEEPEKGETISLPKLGTIYHEILDTLYCHLKEKGYF 834

Query: 830  EINHL-------MKQIIDSHFEKEN-----LPPHIDIIWRHLFHKISHSFLEHEEKI--Q 875
            +           + +I +  F K         P +  + +         FL  + K    
Sbjct: 835  DGKAADTNPVEYLHKIANESFVKMGKQIPIPYPLLWELKKDEIVAALIHFLSWDIKQIEH 894

Query: 876  SSIEKIFVNIPAKMAIESIGIH------LTGFADRIDLLKSGF---VDITDYKTGDNPK- 925
            +     F+    ++A+              G  DRID+ KSG      + DYK+G     
Sbjct: 895  TGYSPAFLEARLQLALPKGKFEDYPAIFFKGKIDRIDVKKSGQEIYFRLVDYKSGKAGTE 954

Query: 926  --KETAQKLIDPQLSLEAAALKAGSFSQID-----CRKV----ANLFYIRLKQKFKIDCI 974
               + A      QL    +  +    +          ++    A+  YI      +    
Sbjct: 955  HLLKAAVCGQKLQLPFYISMAEQFLVNTYRKEVSLPSEIIFDEASFVYIARCMNDENGER 1014

Query: 975  TNDKKKYSADELSEK---SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031
               K   + +E ++        + EI+ +++ G  P        EK+    ++  L R  
Sbjct: 1015 CLQKNTINNNEWAQHKEFFWATVHEILAIIRQGLFPTTG----KEKNCQWCKFATLCRKG 1070



 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 82/702 (11%), Positives = 182/702 (25%), Gaps = 89/702 (12%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
             L+ + + VPT   ++ L+   ++             S  +V    F          + 
Sbjct: 28  DPLSPIAVIVPTNYMLERLQERLVKKHD---------VSFLNVFFLNFYLLAREICRNSK 78

Query: 102 PVSNIQRL--LELARLILIWRNKLPDIIKDLY--------PESPLSLPISPANAIWLAKN 151
                 R       R+I     +    I  L           S         +A   A +
Sbjct: 79  NDIGHIRQEPFIYERIITKLIEQERHHIPSLKNIISPSSIARSMFHSLQDLTDANVNADD 138

Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
           L  +I+   T     + L                  +      +   L     S      
Sbjct: 139 LRAVINEQLTGGADIQKLSD----------------ISRLFTLFQNTLNASGISHDSNLY 182

Query: 212 IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
            +  +  A+         I+  G            S +  +    + LP           
Sbjct: 183 RSAAKHAADSEYLRKFKYILAYGFYDLTGVEQDFFSEIFRYYPTILFLP----------- 231

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                        N    T+ ++     L  L I R       ++ +         S   
Sbjct: 232 ----------YKKNHAVFTYVKHFYESFL--LGIAR-------DIEDLPPDDLQGFSYLM 272

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KS 389
                +            P+      ++++I    + +E   IA  +   +++       
Sbjct: 273 DADSETKTSLHGESMPDAPS----LDNLSIINVSGKHDEIWVIAKEILKLINKGYVFGDI 328

Query: 390 ALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            ++  +      +  E      I        P+      +++  LL    +      +  
Sbjct: 329 GIVARELGQYLNIIQEVFQENAIPFTTLDKEPIEKYPLFTMIKQLLLLDRENFYRPMVID 388

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR--IATQKNNTHVP 506
           +++ P      PE     ++  L  +  R N     I    S +        +     + 
Sbjct: 389 ILESPYFNIPVPELKDVLSRQNLWDIISRTNGIHSGIRCWLSKLEQLKNAMAEPAEEDIL 448

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                +S +  E    +V  +   +  L    T            D        + +  +
Sbjct: 449 PHNINISCDQIESLKNIVQLLSNDLLSLQEKATWSQMCQKTKLFLD----KYIHIPSEDI 504

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
           D+     +++ +E    L    S +       +    ++ D        E ++     + 
Sbjct: 505 DQEIIKRDIFIKERIFCLFDTLSILDRIDK--EITYDQFADTFINACKQEGIQAGTANNK 562

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS----DLNLKTAE--KY 680
            + ++  + +R + F  L L GLNE  +P+   + PFL    +      L     E  + 
Sbjct: 563 GVRVMNAMSARGIPFRILFLVGLNEKEFPRAIFEEPFLPDHTRRILSEALGNHIPEKLRG 622

Query: 681 IGQAAHDFEMANGT--RHLIYTRSLREN-NIPTIASRWLQRL 719
             +    F          +       +    P   S ++  +
Sbjct: 623 FEEERLLFYFLLNAAQERIYLLYERSDEAGKPKTPSHYIMDI 664


>gi|191168614|ref|ZP_03030397.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli B7A]
 gi|190901360|gb|EDV61126.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli B7A]
          Length = 1122

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVMPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--NLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|168236046|ref|ZP_02661104.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194737570|ref|YP_002115945.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194713072|gb|ACF92293.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290752|gb|EDY30106.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 1123

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 105/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKSVEGLGEAQNWQALLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLSFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|26249251|ref|NP_755291.1| exonuclease V subunit gamma [Escherichia coli CFT073]
 gi|227888385|ref|ZP_04006190.1| exodeoxyribonuclease V [Escherichia coli 83972]
 gi|301049386|ref|ZP_07196350.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 185-1]
 gi|26109658|gb|AAN81861.1|AE016765_263 Exodeoxyribonuclease V gamma chain [Escherichia coli CFT073]
 gi|227834654|gb|EEJ45120.1| exodeoxyribonuclease V [Escherichia coli 83972]
 gi|300298828|gb|EFJ55213.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 185-1]
 gi|307554815|gb|ADN47590.1| exodeoxyribonuclease V gamma chain [Escherichia coli ABU 83972]
 gi|315293806|gb|EFU53158.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 153-1]
          Length = 1122

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            + L +             +                + I G +   P   + +  +  H  
Sbjct: 177  DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D +   +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|194426379|ref|ZP_03058934.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli B171]
 gi|194415687|gb|EDX31954.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli B171]
          Length = 1122

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 118/1086 (10%), Positives = 261/1086 (24%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANI--DFP 63

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
                 + + F   L       P  S   +     +L+ +    L      L     L+  
Sbjct: 64   LPASFIWDMFVRVLPEI----PKESAFNKQSMSWKLMTLLPQLLVREDFTLL-RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                 H   +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCHEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|300114627|ref|YP_003761202.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
 gi|299540564|gb|ADJ28881.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
          Length = 1147

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 87/837 (10%), Positives = 196/837 (23%), Gaps = 78/837 (9%)

Query: 150  KNLADIIDIIETEEKKWEDLHAL----KNEKYGMWWL---LAADFLKIASKYWTERLVEL 202
            +   D +  +E EE     LH L            W         L +A         E 
Sbjct: 327  RAFLDFLARLEGEEALRCALHDLRFLPSASYTATQWQLMEALFQLLPLAVAQLQLAFQER 386

Query: 203  NASSPVGYQIALMRAEAEHLMKGTK--------GPIIIAGSTGSIPATARLMSTV---AN 251
                        + A  E                 +++     +  +   L+  +     
Sbjct: 387  GEVDFTEVAQRAVAALGEAEAPTDLALALDYQIRHLLMDEFQDTSLSQYILLERLTIGWE 446

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
               G  +L   D       +                        L      L +     +
Sbjct: 447  AGEGRTLLVVGDPMQSIYRFREAEVGLYLQAWRQGIG------QLPLTPLTLSVNFRSQQ 500

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                + N +      I  +     T  +  +                    E D+  E  
Sbjct: 501  ---GIVNWVNQSFRQILPAAQEIATGAVPYSQSHAFHPLLAAPAVQVHPFFEKDSLTEAE 557

Query: 372  ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
              + +  +          A++   R     +   L   G+        PL +      L 
Sbjct: 558  RVVHLIQQTRQATPNSTIAILVRSRGHLAGIVPLLREAGLGFRALEIEPLGSRPVVQDLL 617

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            +L  A+F L D ++  T+++ P       + Y+   ++    +  R  +      D    
Sbjct: 618  ALTKALFHLGDRLSWLTVLRAPWCGLTLADLYVLAGEDKQAAIWDRIQE------DACIQ 671

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
             L     ++       +   L E  +      V+ +   +        +      ++ + 
Sbjct: 672  RLSEEGRERLGRLRQVFAKALEERRRTSPRRQVEGVWLALGGPACVADSIALEEASVYLD 731

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                  V             +  L+   + +   +L    I     ++ + +    +   
Sbjct: 732  LLEGEAVADEILDFRALEESVARLFAPPDREADETLQIMTIHRAKGLEFDTVIVPGLGCP 791

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
                        +  T       +  LL      +GG  + ++                 
Sbjct: 792  PRHESHQLLLWAERPTAHYSAGNKGALLLAPITGVGGSQDSIYQHIKR------------ 839

Query: 672  LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
              L   +         +      +H +                  ++  +        +L
Sbjct: 840  --LHEEKGEFENGRLLYVAVTRAKHRL------HLLGQVELDDTGKKTKMPSKRSLLASL 891

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                +   +    L   T+           P+       S          P  +   R+ 
Sbjct: 892  WPAVKEKFEAAALLQRETEIREEGTDLADSPISGFISRLS-----TQWQCPAPMAGVRVD 946

Query: 792  ---------KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                      LD I            GT+ H  +  + ++            +   +   
Sbjct: 947  IGDLPEVAPALDSIEFDWAGETARHIGTVVHRYLQIIAEEGPEHWGLTRIMALAPALRQA 1006

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLT 899
              ++ +             ++    LE+        S+  +          +      + 
Sbjct: 1007 LRQQGVVADEMENAMERAREVLGQTLENPRGRWILASNHRQARNEYALSGVLNGR--IIR 1064

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPKKE------TAQKLIDPQLSLEAAALKAGSFS 950
               DR  + ++G   I DYKTG +   +        Q+    QL   AA +   +  
Sbjct: 1065 AVIDRTFIDEAGVRWIVDYKTGTHEGGDREEFLNREQERYHAQLERYAALMALKAPE 1121


>gi|222084227|ref|YP_002542753.1| double-strand break repair helicase AddA [Agrobacterium radiobacter
            K84]
 gi|221721675|gb|ACM24831.1| double-strand break repair helicase AddA [Agrobacterium radiobacter
            K84]
          Length = 1188

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 97/814 (11%), Positives = 217/814 (26%), Gaps = 80/814 (9%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIA 233
              A       ++ + E     +                +  +              I++ 
Sbjct: 365  RAALVLADRLNRDYEELKKRRSQLDFEDLITRTADLLTKKDVGPWIHYKLDQGIDHILVD 424

Query: 234  GSTGSIPATARLMSTVANHPNG--------AIVLPGLDCHIPTAIWNTITEKSTNIT--- 282
             +  + P    ++ ++A               +    D       +     +  +     
Sbjct: 425  EAQDTSPIQWSVIQSLAEDFFSGESARQTLRTIFAVGDEKQSIYSFQGARPERFSEESDR 484

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK----SFLPPDTSD 338
            +     ++  Q+S  +L        + +  + +V         + +              
Sbjct: 485  TRRRVATSGQQFSSIRLPLSFRSTADVLAAVDHVFTAPENARGLSAVDEPVVHRSSRIGH 544

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNER-EEAISIAIALRMS---------------- 381
                D+ E   P       D             A  +A  +  +                
Sbjct: 545  PGAVDLWEMIAPEPAAKEEDWTAPFDSTPESAPAAILARRMAQTIGNLIGRETIIEKGKA 604

Query: 382  -LDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               E      L+    +    +   L  R  I +  +  + L++ +    L +L   +  
Sbjct: 605  RFIEAGDILVLVRKRDSFVNALTRALKRRNNIPVAGADRLVLTSHIAIQDLLALGRFLLL 664

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
              D ++++ L+K PL   G  + +   A    +       +   D  D        +   
Sbjct: 665  PEDDLSLSALLKSPLFDLGEDDVFAVAALRGSDESVWNHLQKFAD--DGNERFRHAVDRL 722

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
            K    +    S      + L         Q +  L T  ++        ++   T     
Sbjct: 723  KTFLALSKSLSVHDFYARVLGSFGGRR--QFLARLGTEVSDILDEFLTFTLDHETSGLPG 780

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                V   E         +++G+    +    +     ++A  +  +D       G    
Sbjct: 781  LQSFVSTLELEAPTVKREQDKGRNEVRIM--TVHASKGLEAPIVFLVD-------GGGKA 831

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---NLKT 676
                    + ++ T +  +     + +  L   +   +TA+   L+      L    +  
Sbjct: 832  FTHTHLPKMRLIETGKQDIPLPVWVPVSALANSLTQADTARLQSLTEEEYRRLLYVGMTR 891

Query: 677  AEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            A   +    +     N  T H + + +LR++        +        G  +  +  +R 
Sbjct: 892  AADRLIICGYRGIRENADTWHAMISAALRQDGERCTPVSFSGPDGEWQGLSWRVSQVERS 951

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
               ++                 +P PP    PR  S S    +I+D     A  +L    
Sbjct: 952  FERMEQAETTVD-RGALPAGLSRPLPPQRNLPRPLSPSGAGTVIDD----EADNLLVTSP 1006

Query: 796  IPHFKKDPDRT-DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
            +   K   DR+ ++G   H ++  L +              +             P    
Sbjct: 1007 LFTEKAKSDRSLEKGRFIHRMLQTLPEIASADRAEAARRYAE-------RAARFWPQA-- 1057

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKSGF 912
              R        + L H E            +     + ++     ++G  DR+ +L    
Sbjct: 1058 -ERDALIGSVMALLSHPELQGVFSAHAQAEVSIMGTLTLDDQAYAVSGRIDRLTVLDD-R 1115

Query: 913  VDITDYKTGDNPKKETAQKLID--PQLSLEAAAL 944
            V I DYKT   P +   Q       QL++    L
Sbjct: 1116 VVILDYKTNRVPPRSAEQIPFAHRAQLAIYREIL 1149


>gi|83953059|ref|ZP_00961781.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
            sp. NAS-14.1]
 gi|83842027|gb|EAP81195.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
            sp. NAS-14.1]
          Length = 1125

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 94/846 (11%), Positives = 224/846 (26%), Gaps = 110/846 (13%)

Query: 145  AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
               L   + D++  +E        L A +          A  FL+I +    ++   L+ 
Sbjct: 302  LFDLMPQVDDLMRRVEDARDARLALRAAQKTHVLH--QFAHRFLEIYAHE-KQKRGWLDF 358

Query: 205  SSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA--------- 250
               +    AL+      A   + + G    I++  +  + P    ++  +A         
Sbjct: 359  DDLILKARALLTNPAVAAWVLYRIDGGIDHILVDEAQDTSPRQWDVIERLADEFYSGDGA 418

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY--STHPQYSLAKLLDFLDIKRE 308
                   +    D       +     +  +          +   Q    + L++      
Sbjct: 419  REEEDRTLFVVGDKKQSIYSFQGADPREFDHKQDLFEQKITQAGQIFQRRSLEYSFRSSS 478

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR-----NTDILENKIPNIQKCFSDVALIE 363
             + +L + +   +  +   + +      S +         + +   P+ ++    V    
Sbjct: 479  AILQLVDTTLAPHTDAGFQADAAHKAFKSALPGRVDLWPVVEKTDEPDDREWSDPVDQKS 538

Query: 364  ADNERE-EAISIAIALRMSLD--------------------ENKKKSALITADRNLARRV 402
            A +     A  +A  ++  ++                           L+    +L   +
Sbjct: 539  AHHHTVVLADQVASQIKELIEGEHYLPVDTDTPGAFARRRIRAGDFLILVQRRSDLFSEI 598

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                    + I  +  + +   L    L +LL+ +    D +++AT +K PL  +     
Sbjct: 599  IRACKTADVPIAGADRLKVGAELAVKDLAALLSFLATPEDSLSLATALKSPLFGWTEQML 658

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
            +        + +       S D       +L  +  Q +         R+         L
Sbjct: 659  FTLSHYRKEDHLWQALR--SSDAYPETVAILRDLRAQVDFLRPYDLIERILTRHDGRRKL 716

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            L     +    +    +   S                               +W + +  
Sbjct: 717  LARLGSEAEDGINAMLSQALSYER------------------GAIPSLTGFLVWMQTDDL 758

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             +        +    +  +  + ++    ++     +P + +   + I  T   +L   D
Sbjct: 759  EIKRQIDNASDQVRVMTVHGAKGLEAPIVILPDTGKRPLVIRDEIIKIGDTPVWKLSEGD 818

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
                                 +   M+  L+ + A +   +    +         +   +
Sbjct: 819  ---------------------MPAAMRGALDDRKAREMAERLRLLYVAMTRAEKWLIVAA 857

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
                 +P   + W Q +    G      +   G          D+         PK    
Sbjct: 858  A--GELPKDGNSWYQMVGAAMGQAGAKPVGSSGGM---RFEHGDWDALPVIDTAPKTHTT 912

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
               +P   +      L     A       K       + +      G L H ++  L   
Sbjct: 913  PVLEPVFNTPLTNIPLRAKTLAPSDLGGAKALPGDDGQSEDAAKSYGNLVHKMLETLPMM 972

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
              ++    + H + Q  D    +  L   I ++       +               +   
Sbjct: 973  HSDRWNG-VLHTLAQGYDETVAQAALREAIAVLDTSELAHV-------------FGKDAL 1018

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLE 940
              +P    + +    L G  DR+ L+    V + DYKT        +   + +  Q+   
Sbjct: 1019 AEVPITAPLGTE--RLHGTIDRL-LVSDTDVLLVDYKTNRVVPDTPDRCPEGLLRQMGAY 1075

Query: 941  AAALKA 946
            AAAL  
Sbjct: 1076 AAALAQ 1081


>gi|27383199|ref|NP_774728.1| hypothetical protein blr8088 [Bradyrhizobium japonicum USDA 110]
 gi|27356373|dbj|BAC53353.1| blr8088 [Bradyrhizobium japonicum USDA 110]
          Length = 1099

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 115/909 (12%), Positives = 241/909 (26%), Gaps = 76/909 (8%)

Query: 66   EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL-ILIWRNKLP 124
            +         P I +L  +      A          P+   +RL ELA    L    K  
Sbjct: 226  DHVDVPPEADPDIVALEALASHFDGAFT--------PLPGFERLWELAHPPHLPIMRKDA 277

Query: 125  DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET-EEKKWEDLHALKNEKYGMWWLL 183
             ++ D    S        A+   LA    +      T        +       +      
Sbjct: 278  SVLLDYRRRSLWRKVAGKADGDRLADQAEEHYARCRTAYGALMGRIATAIIGSFSNELDG 337

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMR--AEAEHLMKGTKGPIIIAGSTGSIPA 241
                     + +      L+    +     ++R      +        I++     + P 
Sbjct: 338  VLAD----YEAFKRSAAVLDFDDLLYTCRQVLRDFPIVRNTAGERFSRILVDEFQDTDPL 393

Query: 242  TARLMSTVANHPNGAIVLPG-----LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
             A ++  + +    A              +       I        ++  T     +   
Sbjct: 394  QAEIIFLLCSDAADAAAWHTKALRPGQLFVVGDPKQAIYRFRGADLATYLTVRQSIERQF 453

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
               +  +         +    NE +   +   ++      +    +D     +  I    
Sbjct: 454  PGNIVKVSANFRSRDPILRHVNECFSEHLSQQQAGYVALHATRGASDNALPGVAKISVEL 513

Query: 357  SDVALIEADNEREEAISIAIALRM-------------SLDENKKKSALITADRNLARRVK 403
                 + A    EEA  +A                  +        AL+        R +
Sbjct: 514  PPETNV-ASARDEEARVVAEVCARLIGNVELKLNDGRARRLTPGDIALLAPVSTDLWRYE 572

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L   GI     AG  L     +  L +L+ A+    D +A+  L++ PL      E+ 
Sbjct: 573  RALEEAGIPFASQAGKNLFKRQEAQDLVALVRALADPRDTLALGALLRGPLVG--LTERE 630

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
            L    + L             I+   + V    A +         +         +    
Sbjct: 631  LLDITSDLPPSEDPDQIAGLTILTDPATVHHDTAREVLGILGDLRRRVNGTSPAMILAEA 690

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
            ++ +   +  +V  ++   +     +I  + +   +          R +   W       
Sbjct: 691  IERLR--VRSIVAARSADQAVRSLANIDGFLERARSYRVRGFARFARDIDEEW------- 741

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                        S   ++A   ++   + I+  TV         + I     S     +T
Sbjct: 742  ------------SDGSSSAEGMVEADGQSIEIVTVHSSKGLEWPVVIPINRASMPRRSET 789

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
             +    +E +     A    +   +   L  + AEK        +         +     
Sbjct: 790  FVYRRSDESLH---WALGKIIPPSLADALLTEEAEKRAENLRLLYVACTRAMESLIIPDF 846

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
              +N  +     L             +   R +       +   + +    +R +     
Sbjct: 847  SWSNDDS--WAKLLSFRSDTIPQLDISGFPRARVSPSSAAENLQSAEIFAEERARLEAAP 904

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
            + +  T S      +I +  A  A     L      +       RG L H ++ EL+   
Sbjct: 905  KVRWITPSE-GDPDVITEQLAWEAGDDEPLRARTTVEGG---RIRGILLHKLMEELVTGE 960

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
            + +++ +      Q+ D  F   ++ P   +    L      +    E K       +  
Sbjct: 961  LVESSEDAASRAAQLRDQLF---SVSPSTTVDAEELAATALKTIRLPELK--PFRSGLMA 1015

Query: 884  NIPAK-MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS--LE 940
             +P   +A       + G AD I   + G     D+K+   PK    +     QL+  L 
Sbjct: 1016 EVPIHAVAAAGADHLIVGRADAIARTEDGDTVAFDWKSDAAPKDTD-RSAYRQQLAQYLY 1074

Query: 941  AAALKAGSF 949
            A   + G+ 
Sbjct: 1075 AIGARKGAV 1083


>gi|193071409|ref|ZP_03052324.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli E110019]
 gi|192955271|gb|EDV85759.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli E110019]
          Length = 1122

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 113/1086 (10%), Positives = 255/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +       +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGLSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|301027505|ref|ZP_07190842.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 69-1]
 gi|300395013|gb|EFJ78551.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 69-1]
          Length = 1122

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 113/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            + L +             +                + I G +   P   + +  +  H  
Sbjct: 177  DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP---------------PDTSDMR 340
               LL        D   L +           +  +                         
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLEGSQELDAFVDVTPDNLLHNIQSDILELENCAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    + +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRLLDPLDNSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|57234561|ref|YP_181362.1| hypothetical protein DET0620 [Dehalococcoides ethenogenes 195]
 gi|57225009|gb|AAW40066.1| conserved domain protein [Dehalococcoides ethenogenes 195]
          Length = 379

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 87/265 (32%), Gaps = 34/265 (12%)

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
             R  S+S+I Q  + P       I  L               GT  H+      +     
Sbjct: 1    MRPLSYSQIDQYQSCPLKYRFLYIDGLKPP-----AKGYFSFGTTLHDCAEYFFR-VKVP 54

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNI 885
              P + +LM+        +       +  +R L  KI   F        +     + V  
Sbjct: 55   PPPSLENLMEYYCLHWRSEGYESAEAEENYRQLGGKILADF---HRIHSADFHMPLAVEH 111

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAAL 944
               + ++  G+ LTG  DR+D L SG + I DYK+       E  Q   + QLSL   A+
Sbjct: 112  QYTVNLD--GVKLTGKIDRVDKLPSGELCIIDYKSNKDLFSAEYVQN--NLQLSLYQLAV 167

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKID-CITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
            +   F       V  L    L+    +     + +    A  L  +  + + + +     
Sbjct: 168  EQIWF-----LPVGELCLYHLRSNTAMRCPARSKEVIADARNLVLEVAEKIEKAI----- 217

Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLA 1028
                F +     E S    ++ HL 
Sbjct: 218  ----FPA----CENSFCPCDFAHLC 234


>gi|91212217|ref|YP_542203.1| exonuclease V subunit gamma [Escherichia coli UTI89]
 gi|117625075|ref|YP_854063.1| exonuclease V subunit gamma [Escherichia coli APEC O1]
 gi|218559834|ref|YP_002392747.1| exonuclease V subunit gamma [Escherichia coli S88]
 gi|237706517|ref|ZP_04536998.1| exonuclease V subunit gamma [Escherichia sp. 3_2_53FAA]
 gi|91073791|gb|ABE08672.1| exodeoxyribonuclease V gamma chain [Escherichia coli UTI89]
 gi|115514199|gb|ABJ02274.1| exodeoxyribonuclease V gamma chain [Escherichia coli APEC O1]
 gi|218366603|emb|CAR04357.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli S88]
 gi|222034536|emb|CAP77278.1| exodeoxyribonuclease V gamma chain [Escherichia coli LF82]
 gi|226899557|gb|EEH85816.1| exonuclease V subunit gamma [Escherichia sp. 3_2_53FAA]
 gi|294491965|gb|ADE90721.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli IHE3034]
 gi|307625586|gb|ADN69890.1| exonuclease V subunit gamma [Escherichia coli UM146]
 gi|312947373|gb|ADR28200.1| exonuclease V subunit gamma [Escherichia coli O83:H1 str. NRG 857C]
 gi|315289390|gb|EFU48785.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 110-3]
 gi|323951720|gb|EGB47595.1| exodeoxyribonuclease V [Escherichia coli H252]
 gi|323957438|gb|EGB53160.1| exodeoxyribonuclease V [Escherichia coli H263]
          Length = 1122

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 112/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            + L +             +                + I G +   P   + +  +  H  
Sbjct: 177  DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ S+ +              D +   +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIISEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728
                   E     +  L  +   R   +N     S  +Q L+   G   +          
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 729  ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS--- 773
                         + +            L    ++      +         +   F+   
Sbjct: 771  ESEARVKAHLTCHHTRMPFDPQNYQPGNLQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 774  -----EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
                  +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|294339627|emb|CAZ87986.1| DNA helicase II [Thiomonas sp. 3As]
          Length = 781

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 73/700 (10%), Positives = 166/700 (23%), Gaps = 86/700 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           A +     T +A +E+ +            +  I +   +      A       L     
Sbjct: 53  AGILAVTFTNKAAKEMMARLSAQLPIPVRGM-WIGTFHGLCNRFLRAH-WREAGLPQTFQ 110

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            +    +LA +  + +    D  +    +                      I+  + +  
Sbjct: 111 ILDIQDQLASIKRLLKALNVDDERHPPKQVQW------------------FINGAKDQGL 152

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
           +  D+ A   +            L      +  +      +      +       ++   
Sbjct: 153 RPGDVEARDPQS---------RQLAEIYLAYEAQCTRDGVADFAELLLRSYEILRDNAAI 203

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHP--NGAIVLPGLDCHIPTAIWNTITEK 277
               +     I++     +     + +  +A      GA V    D       +      
Sbjct: 204 RSHYRQRFRHILVDEFQDTNRLQYQWLKQLAGPEDAQGACVFAVGDDDQSIYAFRGAHAG 263

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           + +                 + L  L+        + + +N +   +             
Sbjct: 264 NMDDYQREFRV---------RHLIKLERNYRSHGHILDSANTLIANNA------------ 302

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITAD 395
                  L   +         V + EA ++  EA  +   +R  L E     + A++   
Sbjct: 303 -----RRLGKNLRTEAGAGEPVRVFEAPSDYAEAQWLIEEIRQLLREGLVHSEIAVLYRA 357

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
             L+R ++  L   G+   +  G+            + L  +    D  A   +V  P  
Sbjct: 358 NALSRVIEGALFNAGLPYRVYGGLRFFERAEVKHALAYLRLLDNPQDDTAFLRVVNFPAR 417

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G       +    L    L    ++       SL        +               
Sbjct: 418 GIGARTLEQLQDAARLRATPLSEAVDALGGRGAASLQAFLDLVAQMRFQT---------- 467

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
               A+ L + +   +         +    G   + +  +L       V  +        
Sbjct: 468 ---AAISLPELVRHVLEASGLNAHYREEREGQERLENLEELVNAAAAFVTQEGFGLQATA 524

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +        F+                   +T                 + ++    
Sbjct: 525 QQRQALGAAPDSFAATDGIDPATGETLSPLTAFLTHAALEAGDNQAQNGQDAIQMMTVHA 584

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L FD + + GL EG++P   A +       +  L      +   +            
Sbjct: 585 AKGLEFDAVFITGLEEGLFPHENALSETDGVEEERRLMYVAITRARKRLYLSLAQ----- 639

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
               TR L       + SR+   L           L   G
Sbjct: 640 ----TRMLHGQTRYNLRSRFFDELPAESLKWLSAKLPGFG 675


>gi|114331346|ref|YP_747568.1| exodeoxyribonuclease V, gamma subunit [Nitrosomonas eutropha C91]
 gi|114308360|gb|ABI59603.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Nitrosomonas
           eutropha C91]
          Length = 1188

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 95/870 (10%), Positives = 203/870 (23%), Gaps = 116/870 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI----EITGKKSTILPIIKS 80
           LL   LV  F+   L+P  L    I V +    Q L+        +  G    I   +  
Sbjct: 22  LLRQLLVHWFKAHSLDP--LEDEIILVQSNGIAQWLKLALAANTTDTPGSGCGIAAALDM 79

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
           L            +L  +  P +S   + L + RL+ +  + +P    +      L    
Sbjct: 80  LLPARFIWRVYRAVLGPDAVPDISPFDKPLLIWRLMRLLPDVIPLPGYEPLARF-LEQDS 138

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHA-----------LKNEKYGMW-WLLAADFL 188
                  LA+ +AD+ D  +     W    A           +         W       
Sbjct: 139 DLRKRYQLAEKIADLFDQYQVYRADWLAAWARGEHVLYNTHHIARPLDATHCWQAML--- 195

Query: 189 KIASKYWTERLVELNASSPVGY---QIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATA 243
                 W   L ++  +S           + A  +   +       + + G +     + 
Sbjct: 196 ------WRALLEDVGVASQSSRAVVHQRFLDAAKKLKNRPDGLPRRVSVFGLSSLPRQSL 249

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT-------TYSTHPQYSL 296
            ++  ++      + +     H    + +                               
Sbjct: 250 EVLLAISPVTQILLCVHNPCEHYWANLLSEKDHARRTSNRHAHKNNTPATITEDALHLYA 309

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-------------- 342
             LL     +  D   L +  +E         +     D                     
Sbjct: 310 HPLLAAWGKQGRDYIALLDELDEPDAYRARFEQVGERIDLFQSHGESTLLNQLQDDIRLL 369

Query: 343 ---DILENKIPNIQKCFS-DVALIEADNEREEAISIAIALRMSLDE----NKKKSALITA 394
              D   +  P I       +    A + + E   +   L  + +       +   ++  
Sbjct: 370 RTVDESRDTWPAIDPASDRSIRFHRAHSVQREVEILHDQLLAAFNADATLRPRDVIVMVP 429

Query: 395 DRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
           D N        +           I   ++             L  LL+          + 
Sbjct: 430 DVNAYAPYIEAVFGQVEHSDARYIPFSMADLTQRQQAPLIFALEFLLDVPESRLTVSDLL 489

Query: 448 TLVKHPLAKFGF-----PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN- 501
            L+  P  +  F         L +      +      ++    +             K  
Sbjct: 490 DLLNVPAVRQCFGIGINDLPRLHQWIRQTNIRWGLSARHRAKFIQESLEQNTWAQGLKRM 549

Query: 502 --------NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKNSTCGNLSISD 552
                   +       S    E       L   +   ++ L+   +T   +     + + 
Sbjct: 550 LLGYAVGCDPTGREDYSWRDIEPYGEVSGLEAALTGSLSRLLIQLETLTETFAEPATPAI 609

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
           W +     LQ     E  +   L   +   +L +                    +     
Sbjct: 610 WGQRLQFLLQGFFKSETAEDTAL-LLQLQTSLHAWLEACTAASFTEMIPLAVIREHWLAQ 668

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           ID   +  +      L     +  R + F  + L G+N+G +P+      F         
Sbjct: 669 IDQPNLAQRFMAGE-LTFATLMPMRAIPFRMVCLLGMNDGEFPRTHPPVDFDLMARDIRP 727

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDN 730
             ++  +          + +    L  +   +   +N     S  + +L       +   
Sbjct: 728 GDRSRREDDRYL-FLEALLSAREKLHISWVGKSILDNSDLPPSVLVSQLRDHIAACWQLA 786

Query: 731 LKKRGQCYLDW--------------------------TRKLDYTTKQPHYKRP-KPFPPL 763
                                                 R+ +     P      +P   L
Sbjct: 787 DSPDNDLLAALTVEHKLQAFSQDYFDKDPATSALFTYAREWERKLISPAAPAATEPSLSL 846

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                  S  ++   + DP   + R  L +
Sbjct: 847 PVFNSPVSLGQLIAFLKDPVKTFCRERLGI 876


>gi|260869501|ref|YP_003235903.1| exonuclease V, gamma chain, RecC [Escherichia coli O111:H- str.
            11128]
 gi|257765857|dbj|BAI37352.1| exonuclease V, gamma chain, RecC [Escherichia coli O111:H- str.
            11128]
 gi|323180258|gb|EFZ65810.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 1180]
          Length = 1122

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLADD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              +                           
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSVEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPDDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|253988070|ref|YP_003039426.1| exonuclease V subunit gamma [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779520|emb|CAQ82681.1| exodeoxyribonuclease v gamma chain [Photorhabdus asymbiotica]
          Length = 1124

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 83/753 (11%), Positives = 185/753 (24%), Gaps = 75/753 (9%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             L+  F  D   P       I V +    Q L+ +  E  G  + I      L      
Sbjct: 14  KELIAIFIGDHPLPDPFEQEVILVQSPGMSQWLQIQLAERIGISANIS---FPLPATFIW 70

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                +L         S      +L  L+      L    + +     L   +       
Sbjct: 71  DMFTKVLSDIPKESAFSKDAMTWKLMALLPQ----LLPEAEFVALRHYLDQDLDKRKIHQ 126

Query: 148 LAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWL-LAADFLKIASKYWTERLVEL 202
           LA  +AD+ D            W+    +        W       L   +    +     
Sbjct: 127 LAGRVADLFDQYLVYRPQWLESWQQGQLIDGLSDNQLWQKRLWLELTEYTHQLQQPKWHR 186

Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                    I+ +   A+         + I G +   P   + +  +  H +  ++    
Sbjct: 187 ANLYQ--RFISTLENSADFSACCLPKRVFICGISALPPVYLQALQALGRHIDIHLMFTNP 244

Query: 263 DCHIPTAIW-------------------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             +    I                      +        + +       Q     LL   
Sbjct: 245 CQYYWGDIQNYSFLAKMSNRKPRHYKSERELEYFKDPGNAQSLFNDEGEQDVSNPLLASW 304

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP------------- 350
                D   L +   +       +            R+   LE+                
Sbjct: 305 GRLGRDNLYLLSQLEQSSDVHAFVELEPDNVLHQLQRDLLYLEDHAQIGSTKEAFENSLK 364

Query: 351 --NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKL 404
              +      ++     + + E   +   L   L++N     +   ++ AD +       
Sbjct: 365 KRLLNPLDRSLSFHVCHSPQREVEVLQDQLLRLLEDNPSLTPRDIIVMVADIDSYTPYVQ 424

Query: 405 EL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
            +         I   IS            +  +LL+          +  L++ P     F
Sbjct: 425 AVFGNASAERYIPFAISDRKARQAHSILQVFITLLDLPQSRFTTEQVLALLEVPALANKF 484

Query: 460 P--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQS 510
              E  L   +  ++   +R   +  ++ +L        +                    
Sbjct: 485 GIHEDGLRLLRRWVDESGIRWGLDDDNVEELSLPVTGQHTWRFGLTRMLLGYAMDSRSGP 544

Query: 511 RLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
                  + +  L   +   +   L+     +     + ++ DW  +    L+     + 
Sbjct: 545 WKDVLPYDNSSGLAAELAGQLAEFLMQLSYWRKILSESQTLGDWLPVCQQLLEAFFASDS 604

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                L   E  +    +    +          +   D +    D E +  +     ++ 
Sbjct: 605 ETELVLAMIE--QQWQRVIGNGLNACYQESVPLVLLRDELALRFDNEKISQRFLAG-SVN 661

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
               +  R + F  + L G+N+G++P++     F   +M         ++         E
Sbjct: 662 FCTLMPMRSIPFKVVCLLGMNDGIYPRSIPPLGF--DLMAEKSQRGDRKRRDDDRYLFLE 719

Query: 690 MANGTRH-LIYTRSLRE--NNIPTIASRWLQRL 719
                   L  +   +   +N     S  +  L
Sbjct: 720 ALISAEQFLYISYIGKSIRDNTECNPSVLVNEL 752


>gi|260856934|ref|YP_003230825.1| exonuclease V, gamma chain, RecC [Escherichia coli O26:H11 str.
            11368]
 gi|257755583|dbj|BAI27085.1| exonuclease V, gamma chain, RecC [Escherichia coli O26:H11 str.
            11368]
 gi|323154798|gb|EFZ40992.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli EPECa14]
          Length = 1122

 Score =  111 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLADD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              +                           
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSVEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPDDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWTHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|120552956|ref|YP_957307.1| exodeoxyribonuclease V, gamma subunit [Marinobacter aquaeolei VT8]
 gi|120322805|gb|ABM17120.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Marinobacter
           aquaeolei VT8]
          Length = 1197

 Score =  111 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 90/959 (9%), Positives = 232/959 (24%), Gaps = 100/959 (10%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI-----TGKKSTILPIIKS 80
           L   +V   R +P+ P  L S T  V +    Q L+    E            I   +  
Sbjct: 22  LRRAVVYICRQNPMPP--LQSETFLVQSNGIAQWLKLALAEKRTEDGVEGGLGIAAGMDF 79

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
           L            +L     P  S   +   + RL  +    +            L    
Sbjct: 80  LFPARFIWQAYRAVLPDGEVPEQSPFDKRRLVWRLYRLLPELVGQDEAFTPLARFLDGRD 139

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---GMWWLLAADFLKIASKYWTE 197
           +      LA+ +AD+ D  +     W        +                      W +
Sbjct: 140 TDLRNFQLAEKVADLFDQYQVFRADWLAAWEQGKDVVITARGEEKALDTEACWQPLLWRK 199

Query: 198 RLVELNASSPVGYQIALMRAEAEHL-------MKGTKGPIIIAGSTGSIPATARLMSTVA 250
            + ++ + +         R  A+                I++ G +         +  ++
Sbjct: 200 LVEDVGSEAHTSRSQIHTRFMAQGQHISEPANASRLPKRIVVFGVSSLPRQALEALYVLS 259

Query: 251 NHPNGAIVLPGLDCHIPTA---------IWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
                 + +                              ++  +     H Q++   L  
Sbjct: 260 RFSQVVLCVHNPCQFYWADIISDRELLKAERKRGAAHPVLSQIDDPDQLH-QHANPLLAA 318

Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD---------MRNTDILENKIPNI 352
           +    R+ ++ L    N    R+   +        +D         +       + +  +
Sbjct: 319 WGKQGRDYIRLLDEFDNPDDYRASFQTPGQKIDIFTDHGDVDNPCLLHQLQNDIHNLTPL 378

Query: 353 QK-----------CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRN 397
           Q+               V   +A   + E   +   L  + +       +   ++  D N
Sbjct: 379 QEIRQQQRTVDLTRDHSVVFHDAHGPQREVEILHDQLLAAFNADPTLRPRDVIVMVPDIN 438

Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           +       +        +  I   IS             L +L++          I +L+
Sbjct: 439 VYAPHIQAVFGRYSPGRKRHIPFTISDQGQRHHEPVLIALETLMSLPRSRFGVSEIISLL 498

Query: 451 KHPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKN 501
           +    +  F   E  +  A+  +E   +R   +      L       ++     +     
Sbjct: 499 EVAGIRDRFDISEDDIPLARRWVEGANIRWGLHGKHRESLDLPAELERNTWQAGLRAMLL 558

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
              +   Q     E       L   +   +   +   +    +     +  +W  L    
Sbjct: 559 GYGMGDDQPWGGVEPYGEIGGLQASLAGRLGEFVHQLEALWQALQATRTPGEWEALFSAM 618

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
           L+        +   L      +    L   +               D++ + +D   +  
Sbjct: 619 LEQFFHKVEGQDLLLLNRFRRQLEQWLDDALAAGLEQQPLPLNIVKDVLLQGLDEGGLNQ 678

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
           +      +     +  R + F  + L G+N+G +P++     F           ++  + 
Sbjct: 679 RFLAG-KVNFATLMPMRAIPFRKVCLLGMNDGDYPRSRPPVDFDLMAQDYRPGDRSRRED 737

Query: 681 IGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                    + +    L  +   R   ++     S  + +L     + +    +  G   
Sbjct: 738 DRYL-FLEALLSAREQLYISWVGRSIRDDSERPPSVLISQLQDHLNSLWKVAGQPDGSVT 796

Query: 739 LDWTRK----------LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
              T +             T      +  +P P  +       F+  ++  +        
Sbjct: 797 KALTTQHPLQPFSRDYFPRTNGVGDGEETQPKPLADVLQARGLFTYEREWRSAHAVDNPE 856

Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK------------ 836
           +  +       ++    T+        I    ++R+      +                 
Sbjct: 857 QSREALPYQTPEEPISLTELANFLKKPIDTFYQRRLQVRFEAVEEDDTDNENFDLNGLDR 916

Query: 837 -QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
            ++ +    +  +    +                     +  +         +  +   
Sbjct: 917 WRLDNELIHEGVVKAASEEELHERLEATLDR-----MARRGDLGMGVTEHRLRTELAGR 970


>gi|304392405|ref|ZP_07374346.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130]
 gi|303295509|gb|EFL89868.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130]
          Length = 1195

 Score =  111 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 95/829 (11%), Positives = 209/829 (25%), Gaps = 97/829 (11%)

Query: 185  ADFLKIASKYWTERLVELNASSP----VGYQIALMRAEAEHL----MKGTKGPIIIAGST 236
              F++  +  +     ++ A             L RA+A       +      +++  + 
Sbjct: 356  LTFIQAIAARYERSKRQVGALDFDDLIARAADLLTRADARAWVLYKLDLGIDHVLVDEAQ 415

Query: 237  GSIPATARLMSTVAN---HPNGA-----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
             + P   +++S +        GA      V    D       +     +S +        
Sbjct: 416  DTSPRQWQVISALVEEFFAGQGARNTNRTVFAVGDEKQSIYSFQGARPESFDTHRRLFER 475

Query: 289  ST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
            ++          +   S     D LD      K   N+     G   +   +        
Sbjct: 476  ASKNAGGTFENANLNLSFRSTADVLDAVDAVFKVPQNMPGVTQGEGTIHDAARSKGAGQV 535

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD-----------ENKK 387
                 I   K    +   S      A +E+  A+ +A  ++  +            +   
Sbjct: 536  DVWPLISAEKAEESEDWTSQQEATIAASEK-LALQVAGTIKSWIGNEPLGPNGRAMQAGD 594

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
               L+ +       +  EL    + +  S  + ++  +    L +L   +    D +A+A
Sbjct: 595  ILVLVRSRDAFVTALNRELKSLEVEVAGSDRLTITDHIAVEDLMALAQVMLTPQDDLALA 654

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             L+K PL      + Y       +E   +R        + L   + D++   K       
Sbjct: 655  GLLKSPLIGLDEDDLYKLARSR-MEGAVMRDRSVREHNVSLFQGLRDQLDEPKFAAAWNT 713

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
             +      D          IL        +         ++            + +    
Sbjct: 714  IKGWRRRADILPVYEFFALILGADGGRRKFMARLGPEVEDV----LDAFASATMDHESRG 769

Query: 568  EHRKLPNLWFEEEGK-TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK-- 624
                   L      +  +     +  E    +  +A + ++     +  ++ K    +  
Sbjct: 770  LPGLQNFLERLSTEQPEIKRELDQRGEQVRIMTVHAAKGMEAPVVFVVDKSSKALPGQFY 829

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
             +         +   N   L +   N+                       +         
Sbjct: 830  PALYRWGDQESADNRNGGWLWVPKTNQHGTATTP------------AFEREHTGAENEYR 877

Query: 685  AHDFEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY----- 738
               +         +        +    +       +L  G    + +++ +G        
Sbjct: 878  RLLYVAMTRAEDRLILCGTCGVSGPDKVPEPSWYNMLERGLEGTWRDVEAQGAVPQHHRW 937

Query: 739  ------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                           T K             +P    +  P+  S S    LI D     
Sbjct: 938  YSHDRAEREGDNPAQTDKQVVDVTPLPATMLQPMERAKDLPKPLSPSGATALI-DEGRTE 996

Query: 787  ARRILKLDFIPHFKKD----PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI---I 839
             R +  L             P     GT  H I         N   P    ++ Q    +
Sbjct: 997  PRAVPSLLEPDAPSAAAYSSPSPRKLGTAVHRIFELWPVVAQNDRMPMGERILDQQLGNL 1056

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
            D       +     ++       +             +  +  V +   + I      +T
Sbjct: 1057 DPAMSANIIYGVQQVVEDPRVADLFD----------PATSRAEVAVMGVLDIGGTQRSVT 1106

Query: 900  GFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
            G  DR+ + +   V + D+KTG+        A      QL+L  A ++ 
Sbjct: 1107 GTIDRMAVTED-AVYLLDFKTGEHVPADAAAAPASYVTQLALYRAIVQR 1154


>gi|331664383|ref|ZP_08365289.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA143]
 gi|331058314|gb|EGI30295.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA143]
          Length = 1122

 Score =  111 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 113/1084 (10%), Positives = 258/1084 (23%), Gaps = 161/1084 (14%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                    L+   AD+ D        W       N  +           L  A   +T+ 
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWEAGNLVEGLGEAQAWQAPLWKALVEYTDE 178

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            L +             +                + I G +   P   + +  +  H    
Sbjct: 179  LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297
            ++      +    I +              ++                            
Sbjct: 238  LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP---------------PDTSDMRNT 342
             LL        D   L +           +  +                           
Sbjct: 298  PLLASWGKLGRDYIYLLSDLEGSQELDAFVDVTPDNLLHNIQSDILELENCAVAGVNIEE 357

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                +    +    + +      + + E   +   L   L+E+     +   ++ AD + 
Sbjct: 358  FSRSDNKRLLDPLDNSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417

Query: 399  ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                   +         +   IS      +        SLL+          +  L+  P
Sbjct: 418  YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454  LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
            +    F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478  VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537

Query: 505  VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                    S    + +  L  + +    + L+     +        + +W  +    L  
Sbjct: 538  ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
              L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598  FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                + I   +  R + F  + L G+N+GV+P+  A   F   +M          +    
Sbjct: 656  AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 712

Query: 684  AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727
                 E     +  L  +   R   +N     S  +Q L+   G                
Sbjct: 713  RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772

Query: 728  -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
                                  + G+        L   ++          P     P T 
Sbjct: 773  EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827
                +++    P   + +  L+++F     + PD       G   + I  +L+   + ++
Sbjct: 833  PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892

Query: 828  TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
              E      +   D                     +++   +      Q           
Sbjct: 893  DAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 940

Query: 887  AKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
             ++ +   G+ +TG             G              P   +  +    QL LE 
Sbjct: 941  MEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWLEH 984

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
                A                           +  D +       +E++L  L +++   
Sbjct: 985  LVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGY 1027

Query: 1002 QNGE 1005
            + G 
Sbjct: 1028 REGM 1031


>gi|82545123|ref|YP_409070.1| exonuclease V subunit gamma [Shigella boydii Sb227]
 gi|81246534|gb|ABB67242.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella boydii
            Sb227]
 gi|320185294|gb|EFW60069.1| exonuclease V subunit gamma [Shigella flexneri CDC 796-83]
 gi|332092015|gb|EGI97093.1| exodeoxyribonuclease V, gamma subunit [Shigella boydii 3594-74]
          Length = 1122

 Score =  111 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 116/1087 (10%), Positives = 254/1087 (23%), Gaps = 167/1087 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+      L +          L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQ----LLEHEDFTLLRHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             P+    F           L +    G +   D  +++ L L           +      
Sbjct: 476  VPVLAARFDITEEGLRYLRLWVNES-GIRWGIDDDNVRELELPATGQHTWRFGLTRMLLG 534

Query: 512  LSEEDK-----------ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
             + E             E + L+ + +    + L+     +        + +W  +    
Sbjct: 535  YAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
            L    L +             +   ++ ++ +              D + + +D E +  
Sbjct: 595  LNAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ 652

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
            +      + I   +  R + F  + L G+N+GV+P+  A   F   +M          + 
Sbjct: 653  RFLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRR 709

Query: 681  IGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF---------- 727
                    E     +  L  +       +N     S  +Q L+   G             
Sbjct: 710  DDDRYLFLEALISAQQKLYISYIGLSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNC 769

Query: 728  --------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                                     + G+        L   ++          P     P
Sbjct: 770  DESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLP 829

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRI 824
             T     +++    P   + +  L+++F     + PD       G   + I  +L+   +
Sbjct: 830  ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV 889

Query: 825  NKNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
             ++  E      +   D                     +++   +      Q        
Sbjct: 890  EQDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------ 938

Query: 884  NIPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLS 938
                ++ +   G+ +TG             G              P   +  +    QL 
Sbjct: 939  -QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLW 981

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
            LE     A                           +  D +       +E++L  L +++
Sbjct: 982  LEHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLI 1024

Query: 999  TLLQNGE 1005
               + G 
Sbjct: 1025 EGYREGM 1031


>gi|332288982|ref|YP_004419834.1| exonuclease V subunit gamma [Gallibacterium anatis UMN179]
 gi|330431878|gb|AEC16937.1| exonuclease V subunit gamma [Gallibacterium anatis UMN179]
          Length = 1104

 Score =  111 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 89/948 (9%), Positives = 244/948 (25%), Gaps = 88/948 (9%)

Query: 27  NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86
              L+             A   I V +    Q L+ +  E     +        +     
Sbjct: 13  QKHLLVRLLEVQPLQDPFAENVILVQSPGMAQWLQLQLAEHFSIAANFA---FPMPSSFI 69

Query: 87  EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
            K     +   +   P +    +  L R+I      L  +         L          
Sbjct: 70  WKLYKQNIAEISEQNPFNKSAMVWRLMRIIP----TLLHLPAFSRLNDYLGSAPEQNKLF 125

Query: 147 WLAKNLADIIDIIETEE---------KKWEDLHALKNEKYGMWWLLAAD----FLKIASK 193
           +LA+ +AD+ D                 W+ +     ++    +   AD     +     
Sbjct: 126 YLAEKIADLFDQYLVYRPEWINQWQTADWQQMTTSFVQQLSPRFKPIADNIMNDISWQVL 185

Query: 194 YWTERLVELNASSPV---GYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARL 245
            W   + ++    P     ++  L +   E L      K     II+ G +   P    +
Sbjct: 186 LWQALVADIQQHYPEQQIWHRANLYQTFLEQLQQGYCPKNLPTRIIVFGISAMPPMFLSI 245

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY------SLAKL 299
           +S ++ + +  +       +    + +    +         +      Y          L
Sbjct: 246 LSALSQYIDIHLFFNSPSRYYWGDLIDHRYLEKLKQKIQTESKEMQTPYDETLAVGNPLL 305

Query: 300 LDFLDIKREDVKRLGNVSNEMYGR-SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
             +  + R+ + +L  +        +       L      +       + I   Q+  + 
Sbjct: 306 ASWGKLGRDFLYQLTQLEPNDIEVYNAPEGGQLLQQLQRQILELTPTASAILQYQEGDNS 365

Query: 359 VALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-------T 407
           + L    +   E   +   L    +++     K   ++ AD +        +        
Sbjct: 366 ITLHVCHSPMREVEVLRDNLLAMFEQDPTLTPKDIVVMVADIDRYTPYIQAVFSQYQEED 425

Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLS 465
           +  I   IS      + +  +    L            + +++  P  +  F      L 
Sbjct: 426 KRYIPFSISDRKVTESDVLIATFLQLFTLKESRFSSDIVLSILDVPAIRQCFEIDLGELQ 485

Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV---PHWQSRLSEEDKELAVL 522
             ++ +    +R   + YD   + +    +   ++                    + +  
Sbjct: 486 TIRDWVTQSGIRFGLDKYDQEPVPNYNAWQNGVERMLLGYALKSESGIWQDAIGFDYSEG 545

Query: 523 LVDHILQCITPLVTYKTNKNS-TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
           L   +   +                NL   +W    +  +  +     + +     ++  
Sbjct: 546 LQGKLAGKLAHFFHALQQWQQKASQNLMAEEWRIAILQLIDTLFNVGEQPIVIALLKQTV 605

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
             +  + +   E       +     +++ + ++ +           L     L  R + F
Sbjct: 606 HQVIDIIN---EADYPQTIDTEIIGELLQQKLNEQD-NSLHFLLGKLNFCTLLPMRAIPF 661

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
             + L G+N+  +P+    N F     Q+    ++  +          + +  + L  + 
Sbjct: 662 KVICLLGMNDVDFPRQLPNNSFDLMQYQTQKGDRSRREDDCYL-FLEALLSARQKLYISY 720

Query: 702 SLRE--NNIPTIASRWLQRLLV-----------------------LGGTDFFDNLKKRGQ 736
                 +N     S  + +L                             +F        Q
Sbjct: 721 VGYSIVDNTEYEPSVLVNQLWDYMADHLSHPDDLKQLRFSYPMTVFSEHNFLAPHFSYAQ 780

Query: 737 CYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
            +L   +           + +    P   +        +++Q +  P   +  + L +  
Sbjct: 781 EWLPIAQAQQQQQHPLREFDQTLLQPENGSHQLIVELDDLQQFVIAPIKYFFEQRLGVY- 839

Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
           +   +++   ++   L      +L ++             ++              +   
Sbjct: 840 LNENEQERVESEVFELTALAQYQLKQRLFENEPQNSTLEFEKAQREGMLPRAEFAFLQQE 899

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
                  +        ++  +    + V       ++   + L G  D
Sbjct: 900 ELEQSCDLLRQATAQYQQQAADSVMVDV----TFELDGQEVRLQGQID 943


>gi|320194959|gb|EFW69588.1| exonuclease V subunit gamma [Escherichia coli WV_060327]
          Length = 1122

 Score =  111 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 111/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            + L +             +                + I G +   P   + +  +  H  
Sbjct: 177  DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSIIFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLSSLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728
                   E     +  L  +   R   +N     S  +Q L+   G   +          
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 729  ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS--- 773
                         + +            L    ++      +         +   F+   
Sbjct: 771  ESEARVKAHLTCHHTRMPFDPQNYQPGNLQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 774  -----EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
                  +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDVEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|92115690|ref|YP_575419.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
 gi|91798584|gb|ABE60959.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter
            hamburgensis X14]
          Length = 1162

 Score =  111 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 93/914 (10%), Positives = 215/914 (23%), Gaps = 98/914 (10%)

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +   +RL E   +I         +   L  +S L           +  ++A ++D     
Sbjct: 270  IEQARRLREAHAMIGEAAQADRYLDVFLTGDSVLRKSFVTKKISDVRPDIAAMLDRESQR 329

Query: 163  EKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE- 220
                 E   AL                   +  +     E             +    + 
Sbjct: 330  VIALLERRRALTIRDRT---QSLLVIATAVAANYRREKQERGLLDYDDLIDKTLAMLDQT 386

Query: 221  ------HLMKGTKGPIIIAGSTGSIPATARLMSTV---------ANHPNGAIVLPGLDCH 265
                  + +      ++I  +  + P    ++  +         A       V    D  
Sbjct: 387  SPGWVHYKLDRGVDHVLIDEAQDTSPKQWDIVERIIADFTTGEGAREGVRRTVFAVGDEK 446

Query: 266  IPTAIWNTITE-------------KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                 +                                +   S   +L+ +D    D   
Sbjct: 447  QSIFSFQGAAPREFDERRSKLERKFRDAELPFRKEDFIYSFRSGKTILESVDYVFRD-AA 505

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
            +    + +    +  S +   P   D+ + +  + +           A+    +E + A 
Sbjct: 506  IYTSIHAVGAHPVHESLADAAPGVVDLWSLEERDARQQIEGWRAPFDAVSATSSEVKLAR 565

Query: 373  SIAIALR--------------MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
             I   ++                         L+    N    +   L + GI +  +  
Sbjct: 566  RIRNEVKTLIAQGTMTGHLGDRRPLRYGDILVLVRRRGNAFDAIIQALKQSGIPVAGADR 625

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
            + L+  +    L +L +A+    D +A+A  +K PL      + +         L     
Sbjct: 626  LKLTEHIAIIDLMNLADALLLPRDDLALAVALKSPLFGLDDDDLFAIAHNRKGSLR---- 681

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                       +L     A  K        +   +    E        +L          
Sbjct: 682  ----------DALADHATANDKFRDAFERLKMCETRAAHESPFAFYAWLLGGDGGRRRIL 731

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                    N ++ ++ +L +T  +     +   +   W       +        +    +
Sbjct: 732  RRLGH-EANDALDEFLELALTYERKAPASQQGFMA--WLRAADTDVKRDMEISRDEVRVM 788

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
              +  + ++     +      P   +   L  +    +        +  G          
Sbjct: 789  TVHGAKGLEASVVFLADTVTSPADTERLNLIRMSRGNAPAHAAGVTVWAGRKAED----- 843

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
                     + +      AE         +         +     +  N   +       
Sbjct: 844  ------PPDVVNARAAMIAETEHEYRRLLYVAMTRAADRLIVGGCKPGNRKDVREHAWYD 897

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            L+  G       +++         R       +P    P                 +   
Sbjct: 898  LIDKGLGKSGLAMREIETAAGTVKRFTRPGETEPDAAGPATPVAAAPIALPPWLHSMAAP 957

Query: 779  IND------PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
                     P         ++       +      RGTL H ++  L    +++      
Sbjct: 958  EAPAGPSLRPSDADDNAHHRIWPGESPDQRRRALLRGTLVHRLLQSLPDVPVDRRGDTAL 1017

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI- 891
              + +      E E       ++      + +  F        +   +  V I  ++   
Sbjct: 1018 AYLGRNARDWSEAERDALAAQVLALIGDSQFAPVF--------TDGSRAEVAIAGRLTTR 1069

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKAGSF 949
                + ++G  DR+ + +   V I D+KT   P      A      QL+L  A L     
Sbjct: 1070 RGDPVLVSGQIDRLVVTRE-AVLIVDFKTNHAPPRNPADAPPAYVRQLALYRAVLARL-- 1126

Query: 950  SQIDCRKVANLFYI 963
                   V      
Sbjct: 1127 --YPELPVKAALLW 1138


>gi|296135521|ref|YP_003642763.1| UvrD/REP helicase [Thiomonas intermedia K12]
 gi|295795643|gb|ADG30433.1| UvrD/REP helicase [Thiomonas intermedia K12]
          Length = 781

 Score =  111 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 165/683 (24%), Gaps = 79/683 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           A +     T +A +E+ +            +  I +   +      A       L     
Sbjct: 53  AGILAVTFTNKAAKEMMARLSAQLPIPVRGM-WIGTFHGLCNRFLRAH-WREAGLPQTFQ 110

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            +    +LA +  + ++   D  +    +                      I+  + +  
Sbjct: 111 ILDIQDQLASIKRLLKSLNVDDERHPPKQVQW------------------FINGAKDQGL 152

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
           +  D+ A   +            L      +  +      +      +       ++   
Sbjct: 153 RPGDVEARDPQS---------RQLAEIYLAYEAQCTRDGVADFAELMLRSYEILRDNAAI 203

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHP--NGAIVLPGLDCHIPTAIWNTITEK 277
               +     I++     +     + +  +A      GA V    D       +      
Sbjct: 204 RSHYRQRFRHILVDEFQDTNRLQYQWLKLLAGPEDAQGACVFAVGDDDQSIYAFRGAHAG 263

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           + +                 + L  L+        + + +N +   +             
Sbjct: 264 NMDDYQREFRV---------RHLIKLERNYRSHGHILDSANTLIANNA------------ 302

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITAD 395
                  L   +         V + EA ++  EA  +   +R  L E     + A++   
Sbjct: 303 -----RRLGKNLRTEAGAGEPVRVFEAPSDYAEAQWLIEEIRQLLREGLAHSEIAVLYRA 357

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
             L+R ++  L   G+   +  G+            + L  +    D  A   +V  P  
Sbjct: 358 NALSRVIEGALFNAGLPYRVYGGLRFFERAEVKHALAYLRLLDNPQDDTAFLRVVNFPAR 417

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G       +    L    L    ++       SL        +               
Sbjct: 418 GIGARTLEQLQDAARLRATPLSEAVDALGGRGAASLQAFLDLVAQMRFQT---------- 467

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
               A+ L + +   +         +    G   + +  +L       V  +        
Sbjct: 468 ---AAMSLPELVRHVLEASGLNAHYREEREGQERLENLEELVNAAAAFVTQEGFGLQATA 524

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +        F+                   +T                 + ++    
Sbjct: 525 QQRQALGAAPDSFAATDGIDPATGETLSPLTAFLTHAALEAGDNQAQNGQDAIQMMTVHA 584

Query: 636 SRLLNFDTLILGGLNE--GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
           ++ L FD + + GL E         ++   +    +      T  +     +        
Sbjct: 585 AKGLEFDAVFITGLEEGLFPHENALSETDGVEEERRLMYVAITRARKRLYLSLAQTRMLH 644

Query: 694 TRHLIYTRSLRENNIPTIASRWL 716
            +     RS   + +PT + +WL
Sbjct: 645 GQTRYNLRSRFFDELPTESLKWL 667


>gi|153931888|ref|YP_001382810.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. ATCC
            19397]
 gi|153936482|ref|YP_001386377.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. Hall]
 gi|251764544|sp|A7FR61|ADDB_CLOB1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|152927932|gb|ABS33432.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. ATCC
            19397]
 gi|152932396|gb|ABS37895.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. Hall]
          Length = 1147

 Score =  111 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S +++    P+A + +  LK      F       D G   H+I+ +   +   +  
Sbjct: 774  KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKQGL 831

Query: 829  PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875
                         + ++I+   + ++L          +      KI     +L  E   +
Sbjct: 832  EWDTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891

Query: 876  SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTGD 922
             + +  +  +   +  +             ++L G  DR+DLL K G     I DYK+G 
Sbjct: 892  GNFKPSYYELSFDIDGDYPPIAMELHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSGA 951

Query: 923  NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               K       +  QL +   A L   +       +   L Y++L      D I  +   
Sbjct: 952  KEFKLSDVYYGLQLQLLIYLDAILTELAERSGINGEPGALLYLKLD-----DPIVKNTVD 1006

Query: 981  YSADELSEKSLKNLI 995
             S +E+ +  +KNL 
Sbjct: 1007 MSDEEIEKSIIKNLK 1021


>gi|148378429|ref|YP_001252970.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. ATCC
            3502]
 gi|251764548|sp|A5HYX0|ADDB_CLOBH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|148287913|emb|CAL81979.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. ATCC
            3502]
          Length = 1150

 Score =  111 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S +++    P+A + +  LK      F       D G   H+I+ +   +   +  
Sbjct: 774  KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKQGL 831

Query: 829  PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875
                         + ++I+   + ++L          +      KI     +L  E   +
Sbjct: 832  EWDTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891

Query: 876  SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTGD 922
             + +  +  +   +  +             ++L G  DR+DLL K G     I DYK+G 
Sbjct: 892  GNFKPSYYELSFDIDGDYPPIAMELHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSGA 951

Query: 923  NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               K       +  QL +   A L   +       +   L Y++L      D I  +   
Sbjct: 952  KEFKLSDVYYGLQLQLLIYLDAILTELAERSGINGEPGALLYLKLD-----DPIVKNTVD 1006

Query: 981  YSADELSEKSLKNLI 995
             S +E+ +  +KNL 
Sbjct: 1007 MSDEEIEKSIIKNLK 1021


>gi|324005625|gb|EGB74844.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 57-2]
          Length = 1122

 Score =  111 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            + L +             +                + I G +   P   + +  +  H  
Sbjct: 177  DDLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D +   +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|320176418|gb|EFW51472.1| exonuclease V subunit gamma [Shigella dysenteriae CDC 74-1112]
          Length = 1122

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 255/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+      L +          L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQ----LLEHEDFTLLRHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +       +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGLSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|238754831|ref|ZP_04616182.1| Exodeoxyribonuclease V gamma chain [Yersinia ruckeri ATCC 29473]
 gi|238706991|gb|EEP99357.1| Exodeoxyribonuclease V gamma chain [Yersinia ruckeri ATCC 29473]
          Length = 1130

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 92/771 (11%), Positives = 197/771 (25%), Gaps = 87/771 (11%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL+    ++N    P  P       I V +    Q L+ +  +     + I 
Sbjct: 18  DLLKAITTALIERDPLDN----PFEPE-----VILVQSPGMAQWLQMQLAQQFSIAANIE 68

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
                L           +L      P  S   +     +L+ +  + L + +        
Sbjct: 69  ---FPLPATFIWDMFTKVLPGI---PKESAFSKDAMTWKLMWLLPDLLNEPVFSSLQR-Y 121

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191
           LS          LA  +AD+ D            WE  H ++       W         A
Sbjct: 122 LSDDGDKRKIYQLAARVADLFDQYLVYRPKWLETWEQGHEIEGLDEAQHWQAPLW---KA 178

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249
              +T +L +             + A  E  +        + I G +   P     +  +
Sbjct: 179 LTEYTRQLQQPEW-HRANLYQRFIYALHESDICPPGLPKRVFICGVSALPPIYLSALQAL 237

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------T 290
             H +  ++      +    I N                                     
Sbjct: 238 GKHIDIHLMFTNPCRYFWGDIQNYAFLAKLQSRKRRHYREKTELSLFREPEQAARLFNDD 297

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349
             Q     LL        D   L +  +E+      +         +   +   LE+   
Sbjct: 298 GEQNLSNPLLASWGRLGRDHMYLLSQVDEIQEVQAFVDIEPDNLLHAIQHDMLELEDHAI 357

Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSAL 391
                           +      ++L    + + E   +   L   L+ +     +   +
Sbjct: 358 IGTTQETLSSSNKKRRLDPKDRSISLHVCHSPQREVEVLQDQLLAMLEADPELTPRDIIV 417

Query: 392 ITADRNLARRVKLELTRF-----GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
           + AD +        +         +   IS               +LL+          +
Sbjct: 418 MVADIDSYTPYIHAVFANAPFERHLPFAISDRKASQAHPALQAFITLLDLPQSRFTSEQV 477

Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497
             L++ P     F   E  L R +  +    +R   +  ++ +L        +       
Sbjct: 478 LALLEVPALANRFGIDEHGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWRFGLTR 537

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556
                       +       + +  L   ++  +   L+     +       ++  W+ L
Sbjct: 538 MLLGYAMSSDAGNWHDVLPYDESSGLAAELVGQLADMLMQLSHWRAQLAEARTLVAWSPL 597

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L      ++     L   E  +    + S  I              D +   +D E
Sbjct: 598 CRQMLDAFFEQDNETEAVLALIE--QQWLKVISYGISAQYPDVVPLTLLRDELAARLDNE 655

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+G++P+      F   +M   +    
Sbjct: 656 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGIYPRTLPPLGF--DLMARQIQRGD 712

Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRLLVLGG 724
             +         E      + L  +   R   +N     S  +  L+   G
Sbjct: 713 RSRRDDDRYLFLEALLSAQQRLYISYIGRSIQDNSTRYPSVLVSELIEYIG 763


>gi|304320182|ref|YP_003853825.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis HTCC2503]
 gi|303299085|gb|ADM08684.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis HTCC2503]
          Length = 1166

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 90/826 (10%), Positives = 203/826 (24%), Gaps = 82/826 (9%)

Query: 182  LLAADFLKIASKYWTERLVELNASS----PVGYQIALMRAEAEHLM---KGTKGPIIIAG 234
                  L+  + +                       L R +   L          +++  
Sbjct: 357  AATERLLRRTTDFCRAEKARRGLLDYDDLVASAASLLTRTDHAWLQFKLSHGLHHLLVDE 416

Query: 235  STGSIPATARLMSTVANHPNGA------IVLPGLDCHIPTAIWNTITEKSTNITSSN-TT 287
            +  + P+   +++ +              V    D       +            +   T
Sbjct: 417  TQDTGPSQWSVLNPLRQALLAHNGEVPKTVFFVGDRKQSIYAFQGADADLFERERAETET 476

Query: 288  YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS--------DM 339
             ++   +   +L       +  +  +         R  +   + +    +        ++
Sbjct: 477  LASRDHFVSRQLFLSFRSSQAILDVVDESFTPEEARRGLSDDAPIRHVAAKPDLPGKVEL 536

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLDENKKKSALIT 393
               +  +  +          A+      R+ A  +A  ++        + +N  K  L  
Sbjct: 537  WPLERRDETLTEDPWSAPVDAVRPEHPTRKLAKRLAADIKKRVGRDDCILKNGDKRPLAY 596

Query: 394  ADR--------NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
             D          +   V   L+   I    +  +PL   +    L S L       D ++
Sbjct: 597  RDILLLCQTRGPIFHEVLRALSEAAIPTAGADRLPLMEDIAVRDLLSALRFAVNHEDDLS 656

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
            +A L+K PL        +         +      + +    D  +  +  I   +   H 
Sbjct: 657  LAELLKSPLVGIDDDLLFALAHGRDQGVTLWSRVREAAGSDDRLAAAVAMIEEAEGTGHA 716

Query: 506  PHWQS----RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                +     L        +     +   +   +                          
Sbjct: 717  SGPFALLSSYLDGGQPSGWLRFHRRLGLGVDLALEELLTDAIAFEQAEPRSLVGFVHYLE 776

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            +++      K  +   E+  + ++   +K  E  +    +A +  ++    I G+  K  
Sbjct: 777  RSLSDGRIIKRDSEDTEDVVRVMTVHGAKGREAHTVYLIDANKPSELKADFIKGDGGKLI 836

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL--SRVMQSDLNLKTAEK 679
               S     L  L                  V      +   +  +     D     AE 
Sbjct: 837  CPPSGVSHPLLDLAKEKAKAREREEYRRRLYVGMTRAEQRLVITGTAGTSKDDPEAVAEA 896

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                 A  + +       +  R  R+++      R L   +           K R     
Sbjct: 897  KPPAEASWYGLVAQAMTRLGERVERQSSPGEAPLRVLS--VASSRDRRVQPDKARQSAAS 954

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                 L     +   +R         Q +  S S I  L                     
Sbjct: 955  AIPNWLFRAADREVEERTLAPSHAVDQDQGRSISTIGPLA-------------------M 995

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
             +      RG L H +   L         P      + +   +         I    R  
Sbjct: 996  VEGQGARRRGILLHGLFERL--------PPLAPAQRRPLGARYLACHGGD--IPAEERAR 1045

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
            + +     LE+E   +         +     + +    ++G  DR+ +L+   V   D+K
Sbjct: 1046 WLEEVLGILENEAFAEVFSPAAKTEMAIAGRLGNR--RISGQIDRL-VLREEEVVFVDFK 1102

Query: 920  TGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            T   P +     +     Q++L    L+     +   R+V      
Sbjct: 1103 THRPPPRRVEDVESATLSQMALYHMLLRQ----RFPGRRVTGALLW 1144


>gi|293390502|ref|ZP_06634836.1| exodeoxyribonuclease V, gamma subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951036|gb|EFE01155.1| exodeoxyribonuclease V, gamma subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 1129

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 103/988 (10%), Positives = 236/988 (23%), Gaps = 134/988 (13%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           E+   +L   +      +PL P       + V +    Q L+ +     G  +       
Sbjct: 11  EVQKDILVELIQRQLLPNPLQPE-----IVLVQSPGMAQWLQLQIAGQKGIAANFA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            +      +  A+ LL    +   +    +  L RL+  +     D ++ L      S  
Sbjct: 63  PMPASFIWQLYAENLLDVAQSNQFNKNAMMWRLVRLVPQYLQ--QDALRPLRHYLAYSAQ 120

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW---------EDLHALKNEKYGMWWLLAADFL-- 188
                   LA  +AD+ D        W         +D+      +  +        +  
Sbjct: 121 SEQFKLYQLAGKIADLFDQYLVYRPDWISAWEHQQDDDILRQIESQLSLNNERLLAQITQ 180

Query: 189 -----KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG----PIIIAGSTGSI 239
                 I  +     +        V ++  L +   E L +         + I G     
Sbjct: 181 NIAWQGILWRALVRAVKADTGLDLVQHRAHLHQLLLEKLRENRPHFLPERLFIFGIPALP 240

Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAI-----------------WNTITEKSTNIT 282
            A   +   ++ + +  +            I                 +N   +   +  
Sbjct: 241 KAYLEIFQAISQYCDVHLFFNNPCEEYWGDIVDPKFVEKLALRTCTDYFNQADKPLLSAE 300

Query: 283 SSNTT--------YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
            +                Q     L  +    R+    L  +        + I+   L  
Sbjct: 301 QATQAQQHWELTYAQEKLQVGNPLLASWGKPGRDFAYLLAQLEPNDISAYVEITPHNLLS 360

Query: 335 DTSDMRNTDILENKIP-NIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKS 389
                          P N ++    +      +   E   +   L   L    D   K  
Sbjct: 361 QIQHRILHLTPNGTTPLNYRENDRTLTFHSCHSLMREVEVLQDYLLHLLQQEPDLTPKDI 420

Query: 390 ALITADRNLARRVKLELTRFG------INIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
            ++ AD +        +          I   IS        +  +   +LL         
Sbjct: 421 IVMVADIDKYTPYIRAVFGQNVTLQTAIPFSISDNKLSENNVIIAGFLTLLQLQESTFSA 480

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS-----LVLDRIAT 498
             +  L+  P  +  F    L       + V   G +      D                
Sbjct: 481 EDVLALLDVPAIRQRFN-IELQDLAQIRDWVKNAGVRFGLAKNDEAESNYNSWQAGLERM 539

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLT 557
                              + +  L   +   +   L        +     S+  W +  
Sbjct: 540 LLGYALREENGIWQDSLGLDNSFGLKGQLAGQLSAFLAALFDWFQTLQNRYSVEQWQQHL 599

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID--- 614
           +                L++      +  +  +  E  + +  +    +D++  +++   
Sbjct: 600 LALTDKFFAATAETDETLFY------IKEVIRQFAEQLAEVHFSDALGVDVVADVMNNAL 653

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
            E        +  +     L  R + F  + L G+N+G +P+  A N F           
Sbjct: 654 EENPNHYRFLAGRVNFCTLLPMRSIPFKVVCLLGMNDGEYPRQQAPNSFDLMQYHRLKGD 713

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLK 732
           +              + +   +L  +   R   +N     S  + +LL     +      
Sbjct: 714 RARRDDDRYL-FLEALLSAQDYLYISYIGRSIADNQEREPSVLVSQLLDYIVENLPAENI 772

Query: 733 KRGQCYLDWTRKLDY-----------------------TTKQPHYKRP----------KP 759
             G   L W  +L                           +                 +P
Sbjct: 773 SVGN--LKWRERLVQQHGMTAFSRKNFEKNDCTFMQSFAQQWLPLANSQVNQTLQDFIQP 830

Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                       FS +   + +P   +  + L ++F    +   D  +      N + + 
Sbjct: 831 MMADAEPENEIEFSRLVAFVKNPVKFFFEKRLGVNFSEQEESIADSENF--ALDNALGKY 888

Query: 820 --IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF---LEHEEKI 874
                 +  +  + +    ++     +          I+ +        F   +      
Sbjct: 889 AIHADLVEADEQQTDAFFARL---KVKGVLPRGEFSAIYANQLLADVAEFKGKIADYVSQ 945

Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                 +       +  +   + L+G  
Sbjct: 946 TPQSRFV----QFTVPTQEGDMTLSGNI 969


>gi|212212385|ref|YP_002303321.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212]
 gi|212010795|gb|ACJ18176.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212]
          Length = 1110

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 93/813 (11%), Positives = 206/813 (25%), Gaps = 107/813 (13%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239
            L I +        E NA       +  +RA  +                 ++I     + 
Sbjct: 357  LPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQPSDYALQLDEQIQHLLIDEFQDTS 416

Query: 240  PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
                 L+  +       +G  +    D       +            +        Q + 
Sbjct: 417  IIQFHLIEKLITGWQPKDGRTLFLVGDPMQSIYRFRQAEVGLFLQVKNEGLGE--IQLTP 474

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              L +    ++  +             +     +F   + S + +     +   N     
Sbjct: 475  LTLRNNFRSQKNLIDWF----------NQTFEPTFPKEENSHLGSISYSHSFATNNSINQ 524

Query: 357  SDVALIEA--DNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINI 413
             ++        N   EA  I   ++    +  +K  A++   R+    +   L    I  
Sbjct: 525  KNINFYSLLNANALNEATQIVKIIQGCRSENPEKTIAILVRSRSQLIEITPALRSADIPF 584

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
                   L+  +    L SL  A+  L D +A   L++ P       + +          
Sbjct: 585  HAVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYA---- 640

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                                                  ++ ++     +L       I  
Sbjct: 641  --------------------------------NDKPIWVALQNASEIAVLTSDGKNRINR 668

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            + +  +        L ++ W +   T L             L   +    L         
Sbjct: 669  IFSILSAAFDNRDRLLLAQWIEGIWTAL--GGPACLSNSTELMNTQAYFQLLETLEN--- 723

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                        ++ +T+ ++    +   +  + + I+   +++ L FD +IL GL +  
Sbjct: 724  ---------DFTLERLTQKLNQLYAQIDTDAKNPIQIMTIHKAKGLEFDHVILPGLEKRP 774

Query: 654  WPKNTAKNPFLSRVMQSD------LNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLREN 706
               +     +L R  ++         LK A +      +  +     +     TR L   
Sbjct: 775  RSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKRIEKEKTTNEITRLLYVA 834

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                  S  L   L          L  +G        ++ +   Q  +++          
Sbjct: 835  ATRAKESFHLLTSLNKEDPQSPIKLPPKGS-----FAEILWPVCQEAFEQSIIIFDDTLP 889

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD--RGTLFHNIITELIKKRI 824
             +      +++L +D    +  + L              +    G + H  +  +  + +
Sbjct: 890  SQKGGLKLLRRLTSDWAPPFILKTLPSPESKPLTPFTPASSKRLGIVIHETLERIANEGL 949

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI--F 882
                 E     K        +    P     + +         L   +       +    
Sbjct: 950  ESWDKERIENNKSFWQRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQK 1009

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDP 935
               P  + +E   I      D   + ++G   I DYK+            +         
Sbjct: 1010 SEYPITL-VEDKKIK-HFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSVHEA- 1066

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
            QL   A      +F  +D R +    Y  L Q 
Sbjct: 1067 QLQQYA-----NAFHALDSRPIKLGLYFPLCQG 1094


>gi|225851300|ref|YP_002731534.1| hypothetical protein PERMA_1770 [Persephonella marina EX-H1]
 gi|225646576|gb|ACO04762.1| hypothetical protein PERMA_1770 [Persephonella marina EX-H1]
          Length = 921

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 78/473 (16%), Positives = 155/473 (32%), Gaps = 61/473 (12%)

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
            +    E+  I+   ++ E +  +  K   + I     S  + FD L    +NEG +P   
Sbjct: 444  EITYSEFNSILLHYLEEEDIDRR-LKGDIVQIRTPNISEGIIFDYLFFVDMNEGKYPSII 502

Query: 659  AKNPFLSRVMQSDL---NLKTAEKYIGQAAHDFEMAN-GTRHLIYTR-SLRENNIPTIAS 713
              +P ++  ++  L    L        Q    F      ++++  +  +  +       S
Sbjct: 503  KDDPVINNTLRVKLEEKGLPKLNASYWQQIITFISIFNSSKNIYISYKNRDDKGNDLSPS 562

Query: 714  RWLQRL-------------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
              ++ L               L   D  +    +     +    ++              
Sbjct: 563  VLVEELLRLNYGRSYFENGDTLKLEDPEEITTLKEFRLKNAAHLINTDNLLKKVVEAHIK 622

Query: 761  PPLE------------AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK-KDPDRTD 807
               E             +    + S+++   + PY  +   ++  D       +      
Sbjct: 623  RESEYITEYEGYVNVNPKYIKLTPSKLQTFSDCPYRFFLSSVINPDTFEIVDTERIPPDK 682

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK--ENLPPHIDIIWRHL---FHK 862
             GT  H I+  + +KRI K+   +  ++  ++   F    E L P   I           
Sbjct: 683  EGTAIHEILEFVYRKRI-KDKSRLRMIIPALVKEKFRPLLEELKPSARIFEEKRVLLLSD 741

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL-KSGFVDITDYKTG 921
            I   F+  + +   +I    V I  K ++   G   TG  DR D   K+G   I DYKTG
Sbjct: 742  ILTEFVIKDLERIRNIYIPEV-IEMKRSVNIYGFKFTGKIDRADRDLKNGKYIIYDYKTG 800

Query: 922  DNP---KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
                   ++   K    QL +         F +   + V  L  + +K+         DK
Sbjct: 801  KKRIDDLRKALLKGEYLQLVIY------KKFLESSGKDVQKLGLLFIKENHSEVSTQLDK 854

Query: 979  KKYSADELSEKSLKNLIEIVTLLQNGEQ-PFISHLRLSEKSNIQSEYDHLARV 1030
            +        EK+ K +  I+ +L++G   P+        +S    E+  + ++
Sbjct: 855  EID------EKTDKVIYIILNMLKDGFFVPYT-----KSESCGYCEFTDICKI 896


>gi|226947662|ref|YP_002802753.1| ATP-dependent nuclease subunit B [Clostridium botulinum A2 str.
            Kyoto]
 gi|226842314|gb|ACO84980.1| ATP-dependent nuclease subunit B [Clostridium botulinum A2 str.
            Kyoto]
          Length = 1147

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S +++    P+A + +  LK      F       D G   H+I+ +   +   K  
Sbjct: 774  KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKKGL 831

Query: 829  PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875
                         + ++I+   + ++L          +      KI     +L  E   +
Sbjct: 832  EWDTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891

Query: 876  SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTGD 922
             + +  +  +   +  +             I+L G  DR+DLL K G     I DYK+G 
Sbjct: 892  GNFKPSYYELSFDIDGDYPPIAMELHSGEVINLIGRVDRVDLLQKDGATYLKIIDYKSGA 951

Query: 923  NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               K       +  QL +   A L   +       +   L Y++L      D I  +   
Sbjct: 952  KEFKLSDVYYGLQLQLLIYLDAILTELAERSGINGEPGALLYLKLD-----DPIVKNTVD 1006

Query: 981  YSADELSEKSLKNLI 995
             S +E+ +  +KNL 
Sbjct: 1007 MSDEEIEKSIIKNLK 1021


>gi|168177772|ref|ZP_02612436.1| ATP-dependent nuclease subunit B [Clostridium botulinum NCTC 2916]
 gi|182670447|gb|EDT82421.1| ATP-dependent nuclease subunit B [Clostridium botulinum NCTC 2916]
          Length = 1150

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S +++    P+A + +  LK      F       D G   H+I+ +   +   K  
Sbjct: 774  KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKKGL 831

Query: 829  PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875
                         + ++I+   + ++L          +      KI     +L  E   +
Sbjct: 832  EWGTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891

Query: 876  SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTGD 922
             + +  +  +   +  +             I+L G  DR+DLL K G     I DYK+G 
Sbjct: 892  GNFKPSYYELSFDIDGDYPPIAMELHSGEVINLIGRVDRVDLLQKDGATYLKIIDYKSGA 951

Query: 923  NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               K       +  QL +   A L   +       +   L Y++L      D I  +   
Sbjct: 952  KEFKLSDVYYGLQLQLLIYLDAILTELAERSGINGEPGALLYLKLD-----DPIVKNTVD 1006

Query: 981  YSADELSEKSLKNLI 995
             S +E+ +  +KNL 
Sbjct: 1007 MSDEEIEKSIIKNLK 1021


>gi|302553996|ref|ZP_07306338.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302471614|gb|EFL34707.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 1044

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 88/815 (10%), Positives = 199/815 (24%), Gaps = 91/815 (11%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK--- 79
             ++   +V       + P     V     T +A  EL     +   K     P      
Sbjct: 53  TTVMAARVVWLVGTGQVAPE---QVLGLTFTNKAAAELAERVRKALVKAGVTDPDAIDPD 109

Query: 80  -SLGDVV---EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
              G+ V      F   LL  + L   +    RLL  A    +    L +         P
Sbjct: 110 NPPGEPVISTYHAFAGRLLTDHGLRIGLEPTSRLLADATRFQLAARVLREA--------P 161

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---------------GMW 180
              P    +   L  +L  +   +     + E L A   E                    
Sbjct: 162 GPYPALTRSFPDLVGDLLALDAELAEHLVRPETLRAYDAELLLTLRGAKLTNADLRKVPD 221

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGY----QIALMRAEAEHLMKGTKGPIIIAGST 236
              A   L      +     E +                  E  H+++     +++    
Sbjct: 222 AAAARRALAELVTRYRAAKRERDLLDFGDQIALSAQLARLPEVGHVLRDEFRVVLLDEYQ 281

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
            +  A   L++ +     G  V    D       W   +  + +    +  ++     + 
Sbjct: 282 DTSVAQRVLLAGLFGDGTGHPVTAVGDPCQAIYGWRGASVANLDDFPEHFAHADGRPATR 341

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
             L                 S        ++  +    +     +  +   +     +  
Sbjct: 342 QAL-----------------SENRRSGGRLLDLANGLAEPLRALHAGVEALRPAPGAERD 384

Query: 357 SDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINID 414
             V         EE    A ++   +       + A++         ++  L    + ++
Sbjct: 385 GIVRCALLRTHAEEIDWAADSVAHLVRTGTAPGEIAVLCRTATDFAEIQGALVARDLPVE 444

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
           +     L      + L ++   +       ++  L+  P  + G  +  L   +    + 
Sbjct: 445 VVGLSGLLHLPEIADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARRLVA 504

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
             R          L   V      +  +          +  D       +          
Sbjct: 505 HARVTGEDDPDRRLAEAVEGVDPAEVISLADALDTFLETPLDGHGDDDGLPFSPDARVRF 564

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE- 593
               T       +L+      L           E    P+       +TLS+        
Sbjct: 565 ARLATELRELRRSLADPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDVAASF 624

Query: 594 TGSCIKANAIEWIDIITRLI--DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                +A  + ++  +      +           +T+ +L   +S+ L +D +++ GL  
Sbjct: 625 AAGDNEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVVVPGLVT 684

Query: 652 GVWPKNTAKNPF------LSRVMQSDLNLKT------------------AEKYIGQAAHD 687
           G +P +  +  +      L   ++ D +                       ++  +    
Sbjct: 685 GTFPSSQGREKWTSQGKVLPHALRGDADTLPDVASWDPRGLKDFHEAMKDHQHTEELRLG 744

Query: 688 FEMANGTRHLIY---TRSLRENNIPTIASRWLQRLLVL-----GGTDFFDNLKKRGQCYL 739
           +      R L+                 S +LQ L        G  + + +     +   
Sbjct: 745 YVTFTRPRSLLLGSGHWWGPTQKKCRGPSAFLQALHDHCAAGYGEIEAWADEPAEDEENP 804

Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
              +    T     +   +  P   A+      S 
Sbjct: 805 ALHQATRPTQVVGPWPLDRGRPWPGARGGRPRPSW 839


>gi|29654533|ref|NP_820225.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493]
 gi|29541800|gb|AAO90739.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493]
          Length = 1110

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 93/813 (11%), Positives = 206/813 (25%), Gaps = 107/813 (13%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239
            L I +        E NA       +  +RA  +                 ++I     + 
Sbjct: 357  LPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQPSDYALQLDEQIQHLLIDEFQDTS 416

Query: 240  PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
                 L+  +       +G  +    D       +            +        Q + 
Sbjct: 417  IIQFHLIEKLITGWQPKDGRTLFLVGDPMQSIYRFRQAEVGLFLQVKNEGLGE--IQLTP 474

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              L +    ++  +             +     +F   + S + +     +   N     
Sbjct: 475  LTLRNNFRSQKNLIDWF----------NQTFEPTFPKEENSHLGSISYSHSFATNNSINQ 524

Query: 357  SDVALIEA--DNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINI 413
             ++        N   EA  I   ++    +  +K  A++   R+    +   L    I  
Sbjct: 525  KNINFYSLLNANALNEATQIVKIIQGCRSENPEKTIAILVRSRSQLIEITPALRSADIPF 584

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
                   L+  +    L SL  A+  L D +A   L++ P       + +          
Sbjct: 585  HAVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYA---- 640

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                                                  ++ ++     +L       I  
Sbjct: 641  --------------------------------NDKPIWVALQNASEIAVLTSDGKNRINR 668

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            + +  +        L ++ W +   T L             L   +    L         
Sbjct: 669  IFSILSAAFDNRDRLLLAQWIEGIWTAL--GGPACLSNSTELMNTQAYFQLLETLEN--- 723

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                        ++ +T+ ++    +   +  + + I+   +++ L FD +IL GL +  
Sbjct: 724  ---------DFTLERLTQKLNQLYAQIDTDAKNPIQIMTIHKAKGLEFDHVILPGLEKRP 774

Query: 654  WPKNTAKNPFLSRVMQSD------LNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLREN 706
               +     +L R  ++         LK A +      +  +     +     TR L   
Sbjct: 775  RSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKRIEKEKTTNEITRLLYVA 834

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                  S  L   L          L  +G        ++ +   Q  +++          
Sbjct: 835  ATRAKESFHLLTSLNKEDPQSPIKLPPKGS-----FAEILWPVCQEAFEQSIIIFDDTLP 889

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD--RGTLFHNIITELIKKRI 824
             +      +++L +D    +  + L              +    G + H  +  +  + +
Sbjct: 890  SQKGGLKLLRRLTSDWAPPFILKTLPSAESKPLTPFTPASSKRLGIVIHETLERIANEGL 949

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI--F 882
                 E     K        +    P     + +         L   +       +    
Sbjct: 950  ESWDKERIENNKSFWQRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQK 1009

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDP 935
               P  + +E   I      D   + ++G   I DYK+            +         
Sbjct: 1010 SEYPITL-VEDKKIK-HFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEA- 1066

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
            QL   A      +F  +D R +    Y  L Q 
Sbjct: 1067 QLQQYA-----NAFHALDSRPIKLGLYFPLCQG 1094


>gi|116514016|ref|YP_812922.1| ATP-dependent nuclease, subunit B [Lactobacillus delbrueckii subsp.
            bulgaricus ATCC BAA-365]
 gi|122275214|sp|Q04AN8|ADDB_LACDB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|116093331|gb|ABJ58484.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactobacillus
            delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1179

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 106/994 (10%), Positives = 247/994 (24%), Gaps = 166/994 (16%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY-PESPLSLPIS 141
                  +         +   + +    + L ++I   R++L               +  +
Sbjct: 71   SFSRLAWFFFKKADLLMPESLDDAAATMILEQIIDKRRDELLLFKNSHANSGMIKQVYST 130

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                     +L ++++              L NE            L +  + + E + E
Sbjct: 131  ILQVHTGQLDLGNLLERAA----DPAVALDLDNET-----RDKLHDLDLIYQDFLEIVSE 181

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             + ++     I L +  A      ++    +   +         M  +A   +       
Sbjct: 182  KHFATKDELNIQLNQLLASRPDLVSQASFYVTDFSHFSIQEKMTMQLLAAFASEMTF--- 238

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEM 320
                             T   S     +    Y + K +  L                  
Sbjct: 239  --------------AFKTADGSVIEPAAGEYDYVVQKTIKDLTGYFSAHDFAW------- 277

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
              R  + S +    D +         +         +++ L++AD+   EA  +A  +  
Sbjct: 278  -EREKIASPASPARDLNQAWQGQGQPD--------LNNLQLVKADSRYAEAYFVARTIYD 328

Query: 381  SLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             +       +   ++  +           L +  I         +       +L +L   
Sbjct: 329  EVALKGCQYRDFLVLAPNLQEYETYLAPILRQNQIPFFDDLQQQMKYHPLVLLLENLGKL 388

Query: 437  IFKLNDFMAIATLVKHPLAKFGF--------PEKYLSRAKNALELVALRGNKNSYDIMDL 488
            + +  D  A+ +++K  L    +         E    R  + LE  AL            
Sbjct: 389  LQQAGDTPALLSIMKTRLLIPDWYLEGDAEAGEAAYLRDIDQLENFALAHGIKYSLWQKP 448

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                        +      W         +    L D  +  I+ L     ++  +   +
Sbjct: 449  LKDFTKAQVIALDQEQYQKWL--------DRLDKLRDFFVSKISRLARQLKSEKDSMTAV 500

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID- 607
             +     +       +     +   +   ++  +        +      +  N   +   
Sbjct: 501  KLFFDFLVKNGVSARLEAWRLKASESGDLQQAQQPEQCWNLLLSLLKDYLLVNPENFAWA 560

Query: 608  ----IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--------NEGVWP 655
                ++T                 + +      +   +  + + G         N+    
Sbjct: 561  DFFKMLTAAFSQANFATIPASLDAVTLSEYGMVQTSGYKQVFIIGAANGSLPQINDQPNF 620

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTI 711
              T     L+     D  L+ +++             +A  +  +  +  +   NN    
Sbjct: 621  LTTENLASLADFFDQDAYLEDSQQLRNLDQEYQFGNALALASDRVYISYPVINSNNDLLD 680

Query: 712  ASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------ 758
             S + +RLL L                K R +        L        Y          
Sbjct: 681  PSIYYKRLLKLVNGREYRQRDLPDIAEKDRTEFARQLLLFLTSPRASLGYLAYAEENSAQ 740

Query: 759  -------------------------------PFPPLEAQPRTY-------SFSEIKQLIN 780
                                           P    E             S S+++    
Sbjct: 741  SPLVAKLVELSRQYEEEKAEEIAEGMAYDNNPQDISEDLAERLYGKDLLSSVSQLESYYQ 800

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------- 829
            + +  +    L+L      + + +    G  FH     L+K+   KN             
Sbjct: 801  NSFEYFLNYGLRLRPR--AENELNAIQSGNYFHRTFELLLKEMQKKNIEIDKLSELDLEL 858

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK----ISHSFLEHEEK---IQSSIEKIF 882
             +  +  +I+     ++ L    +     +F K    ++ S+   +++     +  E  F
Sbjct: 859  LLKQVRSEILQEPLYQQFLRDPFNEYLFKVFDKTTSKVAQSYRRKQQENKMRATYGELAF 918

Query: 883  --VNIPAKMAIES------IGIHLTGFADRIDL-LKSGFVD--ITDYKTG-DNPKKETAQ 930
                  A + +          I L G  DR+DL      V   + DYK+   +       
Sbjct: 919  GPAEKLAGLVLPLKKFAGQRKISLRGKIDRVDLFNGDQHVLGQLIDYKSSDHSFNLARFA 978

Query: 931  KLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962
              +D Q+      L+      +      +   FY
Sbjct: 979  SGVDLQMIAYLDVLEKNRDLLAGGRQFDLLGAFY 1012


>gi|300980534|ref|ZP_07175060.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 45-1]
 gi|300409234|gb|EFJ92772.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 45-1]
          Length = 1122

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 115/1087 (10%), Positives = 257/1087 (23%), Gaps = 167/1087 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            + L +             +                + I G +   P   + +  +  H  
Sbjct: 177  DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D +   +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTGFADRIDLL----KSG--FVDITDYKTGDNPKKETAQKLIDPQLS 938
               ++ +   G+ +T      D L      G              P   +  +    QL 
Sbjct: 939  QSMEIDLACNGVQIT------DWLPQVQPDGLLRWR---------PSLLSVAQG--MQLW 981

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
            LE     A                           +  D +       +E++L  L +++
Sbjct: 982  LEHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLI 1024

Query: 999  TLLQNGE 1005
               + G 
Sbjct: 1025 EGYREGM 1031


>gi|295687598|ref|YP_003591291.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC
            21756]
 gi|295429501|gb|ADG08673.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC
            21756]
          Length = 1153

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 102/933 (10%), Positives = 234/933 (25%), Gaps = 119/933 (12%)

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
            + +    L     +  P +  +      +   L + L  +++  + E         ++  
Sbjct: 279  LELALRALFTEGGEGTPATWPAKTSGLKSREDLREAL--LLEQAKLE----TAREQVRAA 332

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGY----QIALMRAEAEHL----MKGTK 227
            K       A     +  +          A          ++ L            + G  
Sbjct: 333  KVAEDTQNALLLAGLYIERHMAEKDARGALDFTDLIDKTRVLLTEKVEAAWVLYKLDGGV 392

Query: 228  GPIIIAGSTGSIPATARLMSTV-------------ANHPNGAIVLPGLDCHIPTAIWNTI 274
              I++  +  + P    ++  +             +       +    D       +   
Sbjct: 393  DHILLDEAQDTAPEQWEILRALTADFFAGATSEGWSGRRAERTLFIVGDEKQSIYSFQGA 452

Query: 275  TEKSTNITSSNTTYS-------------------THPQYSLAKLLDFLDIKREDVKRL-- 313
                    +                         TH   S    L      RE V     
Sbjct: 453  DPTRLLEETQGYIARIEAVGAVGKGVPLTVSYRSTHQVLSFVDALFSDPETREGVPPPVG 512

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD---------VALIEA 364
             ++      R        L P T ++   +    + P   +              A   A
Sbjct: 513  HDLVRHELFRHGHPGCVDLWPLTRELPGEEREAWEAPVDAEGERSANRRLAEAIAAETAA 572

Query: 365  DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
              +R +A+      R           L+   + L   +   L R G+ +  +  + LS+ 
Sbjct: 573  ILKRGDAVFDKELGRHRAAHAGDILVLVRRRKVLFEEIIRALKRRGVPVAGADRLSLSSH 632

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA--LELVALRGNKNS 482
            +    L +L   +   ND + +A L+K P       + Y         L     R ++  
Sbjct: 633  IAFEDLLALGRFVLFPNDDLTLAALLKAPFCGLADDDIYALAKSRRATLWTELQRRSQER 692

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
             +    ++++   +A  +       + + L   D++                     +  
Sbjct: 693  AEWTAARAVLEWALAEGRRRQPFEFYAAWLGLTDED-------------------GRSHR 733

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
            +       ++  +     L  V   E R + +L           +  K    G+  +   
Sbjct: 734  AKVLTRLGAEAEEALDEFLAQVMEAEQRGVRDLEALVADFAALDIIVKREMEGARREVRV 793

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +                 K  ++  +F+  T   R      L++      +W  +   + 
Sbjct: 794  M------------TAHGSKGLEAPIVFLPETTVKRGAGGSPLLVTEDGGLLWCASGKGDC 841

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
              S   +    L+  ++        +      R  +      +              +  
Sbjct: 842  DASAKARR---LRDDKESQEALRLLYVALTRARDRLILCGRIDARTKDDKVGGWYAAVRA 898

Query: 723  GGTDFFDNLKKR--GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
                       R  G+    + R        P  +     P       T++         
Sbjct: 899  AFAHADIAPHVRPLGEDETAFLRYGPDPAPAPRAEEDIRVPATAPDWMTHAAPPEPAAAR 958

Query: 781  DPYAVYARRILKLDFIPHFKK--DPDRTDRGTLFHNIITELIKKRINK--NTPEINHLMK 836
                       ++       +     R  RG L H ++  L     ++  +        +
Sbjct: 959  YAAPSRIEDNARVPAPSPLARVAGLGRYRRGELVHKLLQILPDLAPDQRASAARRLLAAE 1018

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
            + +     +E       ++    F  +                +  V +    A    G+
Sbjct: 1019 RDLTDDQREEMAAAAFGVLDDARFSAV-----------FGPGSRAEVALAGTSAHLPQGL 1067

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDC 954
             ++G  DR+ + + G V + DYKT          A      Q+++ AA L+         
Sbjct: 1068 AVSGRVDRLVVDE-GRVLVVDYKTNRPSPDRIEDADPAYLAQMAVYAAVLREV----FPG 1122

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
            R V            K+  +       +   L+
Sbjct: 1123 RAVEAALVW--TDGPKLMPVPEKVMAQALARLA 1153


>gi|325125705|gb|ADY85035.1| ATP-dependent exonuclease subunit B [Lactobacillus delbrueckii subsp.
            bulgaricus 2038]
          Length = 1179

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 106/994 (10%), Positives = 247/994 (24%), Gaps = 166/994 (16%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY-PESPLSLPIS 141
                  +         +   + +    + L ++I   R++L               +  +
Sbjct: 71   SFSRLAWFFFKKADLLMPESLDDAAATMILEQIIDKRRDELLLFKNSHANSGMIKQVYST 130

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                     +L ++++              L NE            L +  + + E + E
Sbjct: 131  ILQVHTGQLDLGNLLERAA----DPAVALDLDNET-----RDKLHDLDLIYQDFLEIVSE 181

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             + ++     I L +  A      ++    +   +         M  +A   +       
Sbjct: 182  KHFATKDELNIQLNQLLASRPDLVSQASFYVTDFSHFSIQEKMTMQLLAAFASEMTF--- 238

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEM 320
                             T   S     +    Y + K +  L                  
Sbjct: 239  --------------AFKTADGSVIEPAAGEYDYVVQKTIKDLTGYFSAHDFAW------- 277

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
              R  + S +    D +         +         +++ L++AD+   EA  +A  +  
Sbjct: 278  -EREKIASPASPARDLNQAWQGQGQPD--------LNNLQLVKADSRYAEAYFVARTIYD 328

Query: 381  SLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             +       +   ++  +           L +  I         +       +L +L   
Sbjct: 329  EVALKGCQYRDFLVLAPNLQEYETYLAPILRQNQIPFFDDLQQQMKYHPLVLLLENLGKL 388

Query: 437  IFKLNDFMAIATLVKHPLAKFGF--------PEKYLSRAKNALELVALRGNKNSYDIMDL 488
            + +  D  A+ +++K  L    +         E    R  + LE  AL            
Sbjct: 389  LQQAGDTPALLSIMKTRLLIPDWYLEGDAEAGEAAYLRDIDQLENFALAHGIKYSLWQKP 448

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                        +      W         +    L D  +  I+ L     ++  +   +
Sbjct: 449  LKDFTKAQVIALDQEQYQKWL--------DRLDKLRDFFVSKISRLARQLKSEKDSMTAV 500

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID- 607
             +     +       +     +   +   ++  +        +      +  N   +   
Sbjct: 501  KLFFDFLVKNGVSARLEAWRLKASESGDLQQAQQPEQCWNLLLSLLKDYLLVNPENFAWA 560

Query: 608  ----IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--------NEGVWP 655
                ++T                 + +      +   +  + + G         N+    
Sbjct: 561  DFFKMLTAAFSQANFATIPASLDAVTLSEYGMVQTSGYKQVFIIGAANGSLPQINDQPNF 620

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTI 711
              T     L+     D  L+ +++             +A  +  +  +  +   NN    
Sbjct: 621  LTTENLASLADFFDQDAYLEDSQQLRNLDQEYQFGNALALASDRVYISYPVINSNNDLLD 680

Query: 712  ASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------ 758
             S + +RLL L                K R +        L        Y          
Sbjct: 681  PSIYYKRLLKLVNGREYRQRDLPDIAEKDRTEFARQLLLFLTSPRASLGYLAYAEENSAQ 740

Query: 759  -------------------------------PFPPLEAQPRTY-------SFSEIKQLIN 780
                                           P    E             S S+++    
Sbjct: 741  SPLVAKLVELSRQYEEEKAEEIAEGMAYDNNPQDISEDLAERLYGKDLLSSVSQLESYYQ 800

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------- 829
            + +  +    L+L      + + +    G  FH     L+K+   KN             
Sbjct: 801  NSFEYFLNYGLRLRPR--AENELNAIQSGNYFHRTFELLLKEMQKKNIEIDKLSELDLEL 858

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK----ISHSFLEHEEK---IQSSIEKIF 882
             +  +  +I+     ++ L    +     +F K    ++ S+   +++     +  E  F
Sbjct: 859  LLKQVRSEILQEPLYQQFLRDPFNEYLFKVFDKTTSKVAQSYRRKQQENKMRATYGELAF 918

Query: 883  --VNIPAKMAIES------IGIHLTGFADRIDL-LKSGFVD--ITDYKTG-DNPKKETAQ 930
                  A + +          I L G  DR+DL      V   + DYK+   +       
Sbjct: 919  GPAEKLAGLVLPLKKFAGQRKISLRGKIDRVDLFNGDQHVLGQLIDYKSSDHSFNLARFA 978

Query: 931  KLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962
              +D Q+      L+      +      +   FY
Sbjct: 979  SGVDLQMIAYLDVLEKNRDLLAGGRQFDLLGAFY 1012


>gi|187731174|ref|YP_001881437.1| exonuclease V subunit gamma [Shigella boydii CDC 3083-94]
 gi|187428166|gb|ACD07440.1| exodeoxyribonuclease V, gamma subunit [Shigella boydii CDC 3083-94]
          Length = 1122

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 114/1086 (10%), Positives = 255/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+      L +          L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQ----LLEHEDFTLLRHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  DNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   ++ +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRHWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+              + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWHRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +       +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGLSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASRAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWH---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|161830545|ref|YP_001597082.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331]
 gi|161762412|gb|ABX78054.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331]
          Length = 1110

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 94/813 (11%), Positives = 207/813 (25%), Gaps = 107/813 (13%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239
            L I +        E NA       +  +RA  +            G    ++I     + 
Sbjct: 357  LPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQPSDYALQLDGQIQHLLIDEFQDTS 416

Query: 240  PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
                 L+  +       +G  +    D       +            +        Q + 
Sbjct: 417  IIQFHLIEKLITGWQPKDGRTLFLVGDPMQSIYRFRQAEVGLFLQVKNEGLGE--IQLTP 474

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              L +    ++  +             +     +F   + S + +     +   N     
Sbjct: 475  LTLRNNFRSQKNLIDWF----------NQTFEPTFPKEENSHLGSISYSHSFATNNSINQ 524

Query: 357  SDVALIEA--DNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINI 413
             ++        N   EA  I   ++    +  +K  A++   R+    +   L    I  
Sbjct: 525  KNINFYSLLNANALNEATQIVKIIQGCRSENPEKTIAILVRSRSQLIEITPALRSADIPF 584

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
                   L+  +    L SL  A+  L D +A   L++ P       + +          
Sbjct: 585  HAVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYA---- 640

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                                                  ++ ++     +L       I  
Sbjct: 641  --------------------------------NDKPIWVALQNASEIAVLTSDGKNRINR 668

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            + +  +        L ++ W +   T L             L   +    L         
Sbjct: 669  IFSILSAAFDNRDRLLLAQWIEGIWTAL--GGPACLSNSTELMNTQAYFQLLETLEN--- 723

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                        ++ +T+ ++    +   +  + + I+   +++ L FD +IL GL +  
Sbjct: 724  ---------DFTLERLTQKLNQLYAQIDTDAKNPIQIMTIHKAKGLEFDHVILPGLEKRP 774

Query: 654  WPKNTAKNPFLSRVMQSD------LNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLREN 706
               +     +L R  ++         LK A +      +  +     +     TR L   
Sbjct: 775  RSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKRIEKEKTTNEITRLLYVA 834

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                  S  L   L          L  +G        ++ +   Q  +++          
Sbjct: 835  ATRAKESLHLLTSLNKEDPQSPIKLPPKGS-----FAEILWPVCQEAFEQSIIIFDDTLP 889

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD--RGTLFHNIITELIKKRI 824
             +      +++L +D    +  + L              +    G + H  +  +  + +
Sbjct: 890  SQKGGLKLLRRLTSDWAPPFILKTLPSAESKPLTPFTPASSKRLGIVIHETLERIANEGL 949

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI--F 882
                 E     K        +    P     + +         L   +       +    
Sbjct: 950  ESWDKERIENNKSFWQRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQK 1009

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDP 935
               P  + +E   I      D   + ++G   I DYK+            +         
Sbjct: 1010 SEYPITL-VEDKKIK-HFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEA- 1066

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
            QL   A      +F  +D R +    Y  L Q 
Sbjct: 1067 QLQQYA-----NAFHALDSRPIKLGLYFPLCQG 1094


>gi|291447589|ref|ZP_06586979.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350536|gb|EFE77440.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 371

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 92/344 (26%), Gaps = 25/344 (7%)

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
            K  A +        ++L ++  +            A           LR   +   AS 
Sbjct: 1   MKAPADDGDQPSRFLTELGVEPRDVTGRPRRPLAVAALVAE-------LRATTVDPAASD 53

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            L+                 GQ  +       +        R         Q  + S S 
Sbjct: 54  ALREAAAHRLARLAALTDDEGQPLVPAAHPYRW-WGLEEPTRSAVPLRDRDQALSLSPSA 112

Query: 775 IKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
           + QL N      +  R      +            G + H ++ + +         ++  
Sbjct: 113 LDQLANTCTLQWFLGR-----EVKADAPATAAQGFGNVVH-VLADEVASGRTPADLDVLM 166

Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
                + +    +          +         FL      +             + +E+
Sbjct: 167 ERLDSVWNGLAFDAPWKSEQEKDQAR--AALERFLHWHVLDRGGRTPTASEHDFDVTLEA 224

Query: 894 IG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFS 950
               + + G  DR++    G   + D+KTG   P K+       PQL++   A++ G+  
Sbjct: 225 GEYAVRIRGSMDRVEEDAEGRAYVVDFKTGKGAPTKDEVAAH--PQLAVYQLAVREGAVD 282

Query: 951 QIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
           ++      +      ++L+Q        +   K  A E      
Sbjct: 283 EVFDGRRPEPGGAELVQLRQPAPKKEGGDAFPKVQAQEPLAGEW 326


>gi|148242654|ref|YP_001227811.1| exodeoxyribonuclease V gamma chain [Synechococcus sp. RCC307]
 gi|147850964|emb|CAK28458.1| Exodeoxyribonuclease V gamma chain [Synechococcus sp. RCC307]
          Length = 1071

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 99/869 (11%), Positives = 213/869 (24%), Gaps = 62/869 (7%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
           I  L      E  R+ P NPL    V I   T    + L     E  G  + I       
Sbjct: 10  IEDLATALASELDRHKPANPLTPQRVLI--STNAMSRWLALALSERIGICAGIEFDFAGR 67

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN-KLPDIIKDLYPESPLSLPI 140
             + +     D  L      P    Q   +LA+LI      +L + ++ L+ + P     
Sbjct: 68  H-LRQLILELDGRLPAGHRDPWDPSQLRWQLAQLIPALPQTELWEPLQQLWHQGPQQQDN 126

Query: 141 SPA-NAIWLAKNLADIIDIIETEEKKW--EDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                 + L   L+D +D       +     L+    +           +     +   +
Sbjct: 127 GLDTQRLQLILQLSDTLDQYGLYRPQMVRRWLNGESVDGSHAPLAAHQQWQPALLRELAQ 186

Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
           RL       P    +  +             P+ + G +   PA  +L++  A+  +  +
Sbjct: 187 RLEPSGIPHPAERLLHALEQ--SRQRSDPHEPLHVFGLSSLPPALWKLLAQRASSRDSPV 244

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
           +L  L   +    W ++         +         +    LL  L   + D      + 
Sbjct: 245 LLYQLSPSLDP--WGSLPPSHHEEGDALDRLERRLLHQGHPLLASLGRTQRDFHWQLELI 302

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD------------ 365
                      +   P    +      L+  +   +     +  IE              
Sbjct: 303 AADLQEQFERQQRPAPLCPEEAGLLQQLKADLLVGRPRGEGLPGIEPPLKLQRNQLNLEV 362

Query: 366 ------NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
                   + EA   A+   M+ D + +   ++    ++AR   L L  F      S   
Sbjct: 363 LACHGDRRQVEAAHEALLRLMAGDPSIEPRHILVMTPDVARFTPLVLAVFERPGRSSDPR 422

Query: 420 PL----------STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP-----EKYL 464
            L                 ++  LL           +  ++  P            +   
Sbjct: 423 HLPVRVTDRTLRQRNPRVDLVFRLLALASSRLSRDDVLDVLLLPELAEHLELGGLTQPQW 482

Query: 465 SRAKNALELVALRGNKNSYDI-----MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
               +   +   R   +                                +   +  +   
Sbjct: 483 RELLDQAGICWGRDGDHRQSWGYPAGDAFSWRWGLDRLLLGLELSDGFPEQEAASGEWGG 542

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
                  +      L  +           ++S          Q     +     +    +
Sbjct: 543 LAACNQSLATANDVLALHDACSRLFEQLQALSGPLPAERWNEQIGSAIQQLSGGDDEGWQ 602

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
             +    L        S +  +    + ++      +  +      + + +      R +
Sbjct: 603 APEVYELLTPLRDPEASGLALDRAAVVRLLEEAEAQQQGRYGHVSGA-VSLSALEPMRSI 661

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
               ++L G++E        + P    ++Q         +   +A     +   + H I 
Sbjct: 662 PHRVVVLLGMDEQ-RLPRRDQRPGYDLMLQRPWRGDRDRRQEDRAILLEALQACSDHWIA 720

Query: 700 TRSL-----RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
           T +       E   P      L R L                             +    
Sbjct: 721 TYNAIDPRSGEERNPAAPLSDLLRCLERSYRTEAGEPITTWVLQQQPPLPPLTAREVVGA 780

Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR------RILKLDFIPHFKKDPDRTDR 808
             P        +    S  E++Q + DP     +           +     +  PD   R
Sbjct: 781 PWPMDQRWPVDECEPASLEELQQWLRDPARALLQAHGIHPHRRGDESSDPEESAPDGLQR 840

Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQ 837
            TL   ++    ++      P+    + +
Sbjct: 841 WTLGQRLLNLGSERLEANQWPQQRDALAR 869


>gi|154707778|ref|YP_001424668.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway 5J108-111]
 gi|154357064|gb|ABS78526.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway 5J108-111]
          Length = 1110

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 93/813 (11%), Positives = 206/813 (25%), Gaps = 107/813 (13%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239
            L I +        E NA       +  +RA  +                 ++I     + 
Sbjct: 357  LPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQPSDYALQLDEQIQHLLIDEFQDTS 416

Query: 240  PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
                 L+  +       +G  +    D       +            +        Q + 
Sbjct: 417  IIQFHLIEKLITGWQPKDGRTLFLVGDPMQSIYRFRQAEVGLFLQVKNEGLGE--IQLTP 474

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              L +    ++  +             +     +F   + S + +     +   N     
Sbjct: 475  LTLRNNFRSQKNLIDWF----------NQTFEPTFPKEENSHLGSISYSHSFATNNSINQ 524

Query: 357  SDVALIEA--DNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINI 413
             ++        N   EA  I   ++    +  +K  A++   R+    +   L    I  
Sbjct: 525  KNINFYSLLNANALNEATQIVKIIQGCRSENPEKTIAILVRSRSQLIEITPALRSADIPF 584

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
                   L+  +    L SL  A+  L D +A   L++ P       + +          
Sbjct: 585  HAVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYA---- 640

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                                                  ++ ++     +L       I  
Sbjct: 641  --------------------------------NDKPIWVALQNASEIAVLTSDGKNRINR 668

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            + +  +        L ++ W +   T L             L   +    L         
Sbjct: 669  IFSILSAAFDNRDRLLLAQWIEGIWTAL--GGPACLSNSTELMNTQAYFQLLETLEN--- 723

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                        ++ +T+ ++    +   +  + + I+   +++ L FD +IL GL +  
Sbjct: 724  ---------DFTLERLTQKLNQLYAQIDTDAKNPIQIMTIHKAKGLEFDHVILPGLEKRP 774

Query: 654  WPKNTAKNPFLSRVMQSD------LNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLREN 706
               +     +L R  ++         LK A +      +  +     +     TR L   
Sbjct: 775  RSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKRIEKEKTTNEITRLLYVA 834

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                  S  L   L          L  +G        ++ +   Q  +++          
Sbjct: 835  ATRAKESFHLLTSLNKEDPQSPIKLPPKGS-----FAEILWPVCQEAFEQSIIIFDDTLP 889

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD--RGTLFHNIITELIKKRI 824
             +      +++L +D    +  + L              +    G + H  +  +  + +
Sbjct: 890  SQKGGLKLLRRLTSDWAPPFILKTLPSAESKPLTPFTPASSKRLGIVIHETLERIANEGL 949

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI--F 882
                 E     K        +    P     + +         L   +       +    
Sbjct: 950  ESWDKERIENNKSFWQRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQK 1009

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDP 935
               P  + +E   I      D   + ++G   I DYK+            +         
Sbjct: 1010 SEYPITL-VEDKKIK-HFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEA- 1066

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
            QL   A      +F  +D R +    Y  L Q 
Sbjct: 1067 QLQQYA-----NAFHALDSRPIKLGLYFPLCQG 1094


>gi|239944120|ref|ZP_04696057.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           15998]
          Length = 591

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 72/586 (12%), Positives = 132/586 (22%), Gaps = 64/586 (10%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TLVE+           A + +   +++A  ELR       G  +   P   +        
Sbjct: 22  TLVESVAARVNRGGDPARILVLTFSRKAAVELRDRMAARLG--AARGPQATTFHSYCYAL 79

Query: 89  FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
             A        +    +S  ++ + +  L+    +   +    L          +     
Sbjct: 80  VRAHQDADLFADPLRLLSGPEQDVTVRELLAGQLDLEKE---GLAQVRWPDELRACLTTR 136

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             A  +  ++          + L           W  AA FL         + V   A  
Sbjct: 137 GFADEVRAVLARSRELGLGPDALADFARRTGRPDWTAAAQFLAEYLDILDAQGVLDYAEL 196

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                +   R E    + G    + +     + PA  RL+  +A +   A          
Sbjct: 197 VHRAVLLAERPEVAAELAGRYDAVYVDEYQDTDPAQVRLLHALAGNQGRAPEYAQPTEKA 256

Query: 267 PTAIWNTITEKSTNITSS-----NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
             A                          +            D     V  L        
Sbjct: 257 RGAGARAGRTLIAFGDPDQSIYTFRGADVNGILDFPDTFRRADGSPAPVGVLTTSRRSGA 316

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
           G              + +    +  ++  +  +    V          E  +IA  LR +
Sbjct: 317 GLLAATRLLTRRMPLTRLPADTVRAHRELHAVRDGGRVETYTYPTASTELDNIADLLRRA 376

Query: 382 LDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNA 436
             E+     + + L+ A       V+  LT  G+ +++     PL      + L + L A
Sbjct: 377 HLEDGVPWQEMAVLVRAGGRSLPAVRRALTSAGVPLEVDGDDLPLRHEPAVAPLLTALRA 436

Query: 437 IF------------------------------------KLNDFMAIATLVKHPLAKFGFP 460
           +                                        D     TL+  PL      
Sbjct: 437 VATAALQCLPDLPDLPDLPDRSGLPDLPEGDPGEAGAPSWLDTETALTLLTSPLG--SMD 494

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
              L R   AL               D                  P             A
Sbjct: 495 AADLRRLGRALRDEERAAGIRIPAPSD---------ELLARALAEPERLVTHDPAYAHGA 545

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
             L   + +    L    T + +     + + W             
Sbjct: 546 QRLGALLRKARELLQGGGTAEEALWTLWNGTPWPGRLERAALRGGA 591


>gi|74313390|ref|YP_311809.1| exonuclease V subunit gamma [Shigella sonnei Ss046]
 gi|73856867|gb|AAZ89574.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Shigella sonnei Ss046]
 gi|323167841|gb|EFZ53532.1| exodeoxyribonuclease V, gamma subunit [Shigella sonnei 53G]
          Length = 1122

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 113/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +     + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFSIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIRAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  SAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|104774000|ref|YP_618980.1| ATP-dependent deoxyribonuclease subunit B [Lactobacillus delbrueckii
            subsp. bulgaricus ATCC 11842]
 gi|122983955|sp|Q1GAB0|ADDB_LACDA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|103423081|emb|CAI97802.1| ATP-dependent deoxyribonuclease subunit B [Lactobacillus delbrueckii
            subsp. bulgaricus ATCC 11842]
          Length = 1179

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 106/994 (10%), Positives = 247/994 (24%), Gaps = 166/994 (16%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY-PESPLSLPIS 141
                  +         +   + +    + L ++I   R++L               +  +
Sbjct: 71   SFSRLAWFFFKKADLLMPESLDDAAATMILEQIIDKRRDELLLFKNSHANSGMIKQVYST 130

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                     +L ++++              L NE            L +  + + E + E
Sbjct: 131  ILQVHTGQLDLGNLLERAA----DPAVALDLDNET-----RDKLHDLDLIYQDFLEIVSE 181

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             + ++     I L +  A      ++    +   +         M  +A   +       
Sbjct: 182  KHFATKDELNIQLNQLLASRPDLVSQASFYVTDFSHFSIQEKMTMQLLAAFASEMTF--- 238

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEM 320
                             T   S     +    Y + K +  L                  
Sbjct: 239  --------------AFKTADGSVIEPAAGEYDYVVQKTIKDLTGYFSAHDFAW------- 277

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
              R  + S +    D +         +         +++ L++AD+   EA  +A  +  
Sbjct: 278  -EREKIASPASPARDLNQAWQGQGQPD--------LNNLQLVKADSRYAEAYFVARTIYD 328

Query: 381  SLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             +       +   ++  +           L +  I         +       +L +L   
Sbjct: 329  EVALKGCQYRDFLVLAPNLQEYETYLAPILRQNQIPFFDDLQQQMKYHPLVLLLENLGKL 388

Query: 437  IFKLNDFMAIATLVKHPLAKFGF--------PEKYLSRAKNALELVALRGNKNSYDIMDL 488
            + +  D  A+ +++K  L    +         E    R  + LE  AL            
Sbjct: 389  LQQAGDTPALLSIMKTRLLIPDWYLEGDAEAGEAAYLRDIDQLENFALAHGIKYSLWQKP 448

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                        +      W         +    L D  +  I+ L     ++  +   +
Sbjct: 449  LKDFTKAQVIALDQEQYQKWL--------DRLDKLRDFFVSKISRLARQLKSEKDSMTAV 500

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID- 607
             +     +       +     +   +   ++  +        +      +  N   +   
Sbjct: 501  KLFFDFLVKNGVSARLEAWRLKASESGDLQQAQQPEQCWNLLLSLLKDYLLVNPENFAWA 560

Query: 608  ----IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--------NEGVWP 655
                ++T                 + +      +   +  + + G         N+    
Sbjct: 561  DFFKMLTAAFSQANFATIPASLDAVTLSEYGMVQTSGYKQVFIIGAANGSLPQINDQPNF 620

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTI 711
              T     L+     D  L+ +++             +A  +  +  +  +   NN    
Sbjct: 621  LTTENLASLADFFDQDAYLEDSQQLRNLDQEYQFGNALALASDRVYISYPVINSNNDLLD 680

Query: 712  ASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------ 758
             S + +RLL L                K R +        L        Y          
Sbjct: 681  PSIYYKRLLKLVNGREYRQRDLPDIAEKDRTEFARQLLLFLTSPRASLGYLAYAEENSAQ 740

Query: 759  -------------------------------PFPPLEAQPRTY-------SFSEIKQLIN 780
                                           P    E             S S+++    
Sbjct: 741  SPLVAKLVELSRQYEEEKAEEIAEGMAYDNNPQDISEDLAERLYGKDLLSSVSQLESYYQ 800

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------- 829
            + +  +    L+L      + + +    G  FH     L+K+   KN             
Sbjct: 801  NSFEYFLNYGLRLRPR--AENELNAIQSGNYFHRTFELLLKEMQKKNIEIDKLSELDLEL 858

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK----ISHSFLEHEEK---IQSSIEKIF 882
             +  +  +I+     ++ L    +     +F K    ++ S+   +++     +  E  F
Sbjct: 859  LLKQVRSEILQEPLYQQFLRDPFNEYLFKVFDKTTSKVAQSYRRKQQENKMRATYGELAF 918

Query: 883  --VNIPAKMAIES------IGIHLTGFADRIDL-LKSGFVD--ITDYKTG-DNPKKETAQ 930
                  A + +          I L G  DR+DL      V   + DYK+   +       
Sbjct: 919  GPAEKLAGLVLPLKKFAGQRKISLRGKIDRVDLFNGDQHVLGQLIDYKSSDHSFNLARFA 978

Query: 931  KLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962
              +D Q+      L+      +      +   FY
Sbjct: 979  SGVDLQMIAYLDVLEKNRDLLAGGRQFDLLGAFY 1012


>gi|147669238|ref|YP_001214056.1| exonuclease-like protein [Dehalococcoides sp. BAV1]
 gi|146270186|gb|ABQ17178.1| RecB family exonuclease-like protein [Dehalococcoides sp. BAV1]
          Length = 379

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 90/266 (33%), Gaps = 36/266 (13%)

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
             R  S+S+I Q  + P       I  L  +            GT  H+      +  +  
Sbjct: 1    MRPLSYSQIDQYQSCPLKYRFLYIDGLKPLEK-----GYFSFGTTLHDCAEHFFR--VKV 53

Query: 827  NTPEINHLMKQIIDSHFEKENLPP-HIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVN 884
              P     + +   SH+         I+  +R L  +I   F       ++     + V 
Sbjct: 54   PPPLSLEKLMEYYQSHWRSGGYESVEIEENYRQLGREILAEF---HRIHRADFHMPLAVE 110

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAA 943
                + ++  G+ LTG  DR+D L SG + I DYK+       E  Q   + QLSL   A
Sbjct: 111  HQYTVNLD--GVKLTGKIDRVDKLPSGELCIVDYKSNKDLFSAEYVQD--NLQLSLYQLA 166

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKID-CITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
            ++   +       V  L    L+    +     + +    A  L  +  + + + +    
Sbjct: 167  VEQIWY-----LPVGELCLYHLRSNTAMRCPARSKEVIADARRLVLEVAEKIEKAI---- 217

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028
                 F +     E +    ++ HL 
Sbjct: 218  -----FPA----CENNFCPCDFAHLC 234


>gi|149927014|ref|ZP_01915272.1| RecB family exonuclease-like protein [Limnobacter sp. MED105]
 gi|149824235|gb|EDM83455.1| RecB family exonuclease-like protein [Limnobacter sp. MED105]
          Length = 865

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/604 (12%), Positives = 163/604 (26%), Gaps = 50/604 (8%)

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                    +A + +             +  L  L   R+     +  V            
Sbjct: 261  PDETTQAQQAAHQILEWLREDPVTEIAVAVLDRLAARRLVGLLADIGVLVDDRTGWRLST 320

Query: 518  ELAVLLVDHILQCIT---------------PLVTYKTNKNSTCGNL-SISDWTKLTVTCL 561
                   DH+LQ                  PL   +       G+   ++ W    +   
Sbjct: 321  SNVAGWFDHLLQQFVAQGQLTDIVQPFTGLPLEHLEPWAFGKTGSRHPLAQWAGAFLALF 380

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            +   LD       L  +E G+ L ++   + +  +  + +A E++       + +  +P 
Sbjct: 381  EKHGLD-----TALQPDEAGQQLLTVLGLMRQVPAQTEFDAHEFLAAWRSWAESQRFRPL 435

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
              +S  + ++  L +R+  F  +++ G  +  + ++      L   +  +L         
Sbjct: 436  DIESP-VRMVPLLSTRMRQFKRVLVLGCAQSHFQESPPG--LLPPAVAQELGFPGPRLAR 492

Query: 682  GQ-AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
             Q  +  +E+   +  +    S +    P +    L  L ++             Q Y  
Sbjct: 493  IQKISALYELLLHSNEVTLVHSAQVAGKPEMLLPELMWLDIVLRDSESHAQPWASQWYRA 552

Query: 741  WTR-KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
             +  +++         +        + P +   + +            +  L        
Sbjct: 553  PSDFEIEVREAPEQALQLTALSDSGSIPESLRVTALDDWKACRLRFGLKHALPWPAQRDE 612

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKN-----TPEINHLMKQIIDSHFEKENLPPHIDI 854
                    RG   H ++ +  +                  +       + K  L     +
Sbjct: 613  GAMRYEQLRGIFVHKVLEKTAQYMALPGQPVNQLQAWKQTLLDQAQLVWNKLELDDRATV 672

Query: 855  I-WRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAI----ESIGIHLTGFADRIDLL 908
              +   F +I         + Q    +        +  +        + L G  DR+D  
Sbjct: 673  YPFLKFFDQIVPRLAGKLMERQIQGWQFKGAEQQIEHTLVLQPSGASLALKGRVDRLDTR 732

Query: 909  KSGFVDITDYK-TGDNPKKETAQKLID-PQLSLEAAALKAGSFSQIDCRKVANLFYIRL- 965
                + I+D K T     K+     +  PQL    A L             A L ++ L 
Sbjct: 733  GE-ALAISDIKFTNPAVLKKRLADPLSQPQLPAYQAML---------NSPGAQLDFLGLH 782

Query: 966  KQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
            K K           ++S           L ++ T L +  Q          ++       
Sbjct: 783  KDKVDWVSFPPLSNEFSEQGFKSWGEVLLSQLATELNSFFQGKAVWQANPGEACEYCAVR 842

Query: 1026 HLAR 1029
             + R
Sbjct: 843  GVCR 846


>gi|322804706|emb|CBZ02258.1| ATP-dependent nuclease, subunit B [Clostridium botulinum H04402 065]
          Length = 1153

 Score =  110 bits (274), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S +++    P+A + +  LK      F       D G   H+I+ +   +   +  
Sbjct: 777  KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKQGL 834

Query: 829  PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875
                         + ++I+   + ++L          +      KI     +L  E   +
Sbjct: 835  EWDTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 894

Query: 876  SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTGD 922
             + +  +  +   +  +             ++L G  DR+DLL K G     I DYK+G 
Sbjct: 895  GNFKPSYYELSFDINGDYPPIAMELHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSGA 954

Query: 923  NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               K       +  QL +   A L   +       +   L Y++L      D I  +   
Sbjct: 955  KEFKLSDVYYGLQLQLLIYLDAILTELAERSGINGEPGALLYLKLD-----DPIVKNTVD 1009

Query: 981  YSADELSEKSLKNLI 995
             S +E+ +  +KNL 
Sbjct: 1010 MSDEEIEKSIIKNLK 1024


>gi|161615930|ref|YP_001589895.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161365294|gb|ABX69062.1| hypothetical protein SPAB_03727 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 1123

 Score =  110 bits (274), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 108/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYSLA 297
           ++      +    I                      +     N        S   Q    
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRCHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 298 KLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNIEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|296392994|ref|YP_003657878.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
 gi|296180141|gb|ADG97047.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
          Length = 1062

 Score =  110 bits (274), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 100/872 (11%), Positives = 217/872 (24%), Gaps = 91/872 (10%)

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                     +P   +  A+ LA ++     +  +     +L+  +        A+ L + 
Sbjct: 183  GRRMAEQLAAPDRVLAAAEELARLV-RTLPKGPRQRAEPSLELREAVAVQQARAELLGVV 241

Query: 192  SKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            ++   +RL    A                  +           +++     +  A   L+
Sbjct: 242  AR-MQDRLRSSGAVDFATQTARAAELAQRFPQVRAEECAAHRVVLLDEYQDTGHAQRILL 300

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              +   P       G   +           ++       ++               L   
Sbjct: 301  RALFGPPRIGGAARGGGANGAAVTAVGDPHQAIYAWRGASSG-------------NLAAF 347

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEAD 365
            + D      ++     R+            + +R   I   ++       +  V +   D
Sbjct: 348  QADFGAPEALTLMTSWRNPASVLDLANLTAAPLRRAGIAVPELAARPDAPAGEVRVALFD 407

Query: 366  NEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLST 423
            +   E   IA  LR +   +  +   A++      A  V   LT  G+   +     L  
Sbjct: 408  DAAAERAWIAERLRHAAQTSPTRPSMAVLVRRNADAVPVAEALTAAGLEAQVIGLGGLLA 467

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
            T   + L ++L  I       A   ++  P  + G  +      +               
Sbjct: 468  TPQVAELVAMLELIADPGASAAALQVLTSPRWRIGARDLAALAQRAQELGPGRARPLAPR 527

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
            D  +L   +   +A   +             +    +      +      L   +     
Sbjct: 528  DPAELVEQLTAVLADDGSERAGLGDALADLGDQGRYSAAGYARLALLAGELDRLRGQLAR 587

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                          V  +  + ++   +                 +  +  GS   A  +
Sbjct: 588  PLPEF------VTLVERVTGLAVEADAQAKERLSAFASVVAEHAKAAELLGGSASLAGLV 641

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
             ++ +   +  G  V         + +L    ++ L +D + +  L  GV+P   A++ +
Sbjct: 642  GYVRLAETVERGLPVGEVAPDPRKVQVLTVHAAKGLEWDVVAVAHLCAGVFPTGRARSTW 701

Query: 664  LSRVMQ---SDLNLKTAEKYIGQAAHDFEMANGT---------RHLIYTRSLRENNIPTI 711
            +  + +    DL   T+ +   +                    R L Y    R      +
Sbjct: 702  IGALAELPPEDLGPLTSSQDRAELQEMLRAEREAAKELAGEEERRLAYVAVTRAKQTLLL 761

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            +  WL              ++ R            +                E       
Sbjct: 762  SGHWLAEGAERALGPSAFLVEWRDALVAAGGSPDMWAESPALDHMRPASGESEGALWPPD 821

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD------------------------ 807
                ++      A   R  L         + PD                           
Sbjct: 822  PLLGRRAQTQRGAERVRAALADAVPLPRPEGPDAELYEAAAALVAERAAAAEARSVERAG 881

Query: 808  ------RGTLFHNIITELIKKRINKNTPEINHLMKQ----------IIDSHFEKENLPPH 851
                   G        E  + R     P                  + +     + LP  
Sbjct: 882  LTVSDVVGIAVDPAGFERERARRGPRPPAPEAQAGIGFHEWVRRWYLSEELVGLDELPGA 941

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
             D        K+   FLE     +S    + V  P ++ ++  G+ + G  D +     G
Sbjct: 942  ADDDDAVASEKLRQKFLESPWAARS---PVAVETPFELNLD--GVLVRGRIDAVFAEPGG 996

Query: 912  FVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
               + D+KTG        ++    QLS+   A
Sbjct: 997  GYVVVDWKTGRA----DLRRAKA-QLSVYRLA 1023


>gi|328545810|ref|YP_004305919.1| Double-strand break repair helicase AddA [polymorphum gilvum
            SL003B-26A1]
 gi|326415550|gb|ADZ72613.1| Double-strand break repair helicase AddA [Polymorphum gilvum
            SL003B-26A1]
          Length = 1165

 Score =  110 bits (274), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 85/882 (9%), Positives = 198/882 (22%), Gaps = 86/882 (9%)

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYG-MWWLLAADFLKIASKYWTERLVELNASSP 207
            A+   D++D++  E+ +   L   +                      +            
Sbjct: 313  AEEFPDVLDLMLREQARLLALVERRRAAVTLEGTAAILRLADAVIADYEAVKARRGLLDF 372

Query: 208  VGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN-------- 251
                +               ++ +      I++  +  + P    ++  +A         
Sbjct: 373  EDLVVRTANLLSVSEAAQWVQYKLDQGLDHILVDEAQDTSPRQWEVVKALAEEFFAGEGA 432

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HP---QYSLAKLLD 301
                  +    D       +        +                 HP   Q S     D
Sbjct: 433  RTRARTIFAVGDEKQSIYSFQGAVPAYFDEMRRYFERRAREAARDFHPVELQLSFRSTPD 492

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L       ++              + ++              L +K        + +  
Sbjct: 493  VLGAVDLVFQQPEVHKGLSQVARAPVHEAIRREPGLVEIWPLELPDKTVEPDDWTAPIDR 552

Query: 362  IEADNER-EEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDIS 416
            I   N     A  IA  LR+ +DE          L+         +  EL R  I    S
Sbjct: 553  IGEGNPMLRLARRIAETLRIWIDEGTADAGDVLVLVRKRGAFVEALNRELKRLDIPAAGS 612

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
              + L+  +    L +L   I    D +++A ++K PL      +  L            
Sbjct: 613  DRLVLTDHIAVKDLIALGRFILLPEDDLSLACVLKSPLFG--LDDDALLEIARDPVDRLR 670

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
             G      +   ++        +   T           E     +   D   +    L  
Sbjct: 671  AGTLWQSLLRKSETETRWLSVRKALETCRSRADFMPPFEFYARLLAADDGRRKFRARLGA 730

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
               +       L++S     T      +           W E     +    +       
Sbjct: 731  EVDDVLDEFLALAMSYEQTGTPGLEGFLA----------WLEAAPTQIKRELTNAGGLVR 780

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             +  +  + ++    ++      P + +     +     +  +    L+           
Sbjct: 781  IMTVHGSKGLEAPIVILVDPGSAPAVARHDPALLERPRGTDPMVPPALVWLPTKADR--- 837

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW- 715
                    +      ++              +         +       +     A    
Sbjct: 838  --------TGWHAEAVDAVREAAEEEYRRLLYVAMTRAEDRLLVCGWAPSRGAHEACWHS 889

Query: 716  ---------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                      + +    G       +K G       +       +P  +      P+   
Sbjct: 890  LVAAALVPQAEEIKDAAGRTVCWRWQKAGAEPPPRVKAEAAPAAEPPARPDWLVRPVPPA 949

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-RTDRGTLFHNIITELIKKRIN 825
            P+       +             +     +   ++      +RG L H ++  L      
Sbjct: 950  PQVPRLQPSRAFEAMEQKEGIEPVAGRTALEAIRQPAGWALERGRLMHRLLETLPDLPAA 1009

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
            +        ++  +   F +           R      +   L   +       +    +
Sbjct: 1010 ERAAAAVRFVEAALPQRFAQH----------RDALLDEAERILAGADFAPLFAARGRAEV 1059

Query: 886  PAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLE 940
                 +   +   + ++G  DR+     G V I DYKT   P    E   +    QL++ 
Sbjct: 1060 AIVGTLTGPDGRQVAVSGQIDRLVEEP-GRVLIVDYKTNARPPALLEGVPEEYLAQLAVY 1118

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
               ++           V                       +S
Sbjct: 1119 RRLVQDI----FPGLPVEAALLWTAAPSLMPLPGDLLDAAFS 1156


>gi|319442809|ref|ZP_07991965.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile
           DSM 44702]
          Length = 1179

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 91/897 (10%), Positives = 228/897 (25%), Gaps = 84/897 (9%)

Query: 3   NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLAS-VTIYVPTKRAIQELR 61
           +++  V               A    T+     +   N L+L   V     T++A +EL 
Sbjct: 26  DQQAAVIGAPAGPMLVVAGAGAGKTETMAARVVWLVANGLVLPEQVLGLTFTRKAARELG 85

Query: 62  SEFIEITGKKSTI-----LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
                     ++      +P I        + F  D++  Y L  P     R++      
Sbjct: 86  VRIRARLQSLASSGLVESMPAITPTVS-TYDSFAGDIVREYGLLLPTEPTGRVITDTERW 144

Query: 117 LIWRNKLPDIIKDL--YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174
           +I R+ + +       +   P  +         +  +LA   D+ +       ++  L +
Sbjct: 145 MIARDVVLERSTGFTTHRSVPTIIDDMLELNDGMDNHLATFTDVDDECRATAAEIDGLPD 204

Query: 175 EKY------------GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH- 221
                              L+    L      +  RL + N  +         +  A H 
Sbjct: 205 RDGKALKGVDTTLRKIGDALVYRRELLEVVADYRARLADRNLMTFGAQMSKAAQLVAAHP 264

Query: 222 ----LMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTIT 275
                 +     +++     +  A   L+  +          V    D       +   T
Sbjct: 265 EVGAAQRRRFRVVMLDEYQDTGHAQRVLLRGLFGGGVDPDLTVTAVGDPMQSIYGFRGAT 324

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
             +     ++    T             D      + L            + +       
Sbjct: 325 AANLTHFRTDFPTGTGK-----------DATPARKRELTTSWRNPARVLDLANTVSRWSL 373

Query: 336 TSDMRNTDI-LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK------ 388
            +    +   +   +        DV     D   EE + +A  L  +   + +       
Sbjct: 374 DAAGTGSPASVSPLVSRPGAGTGDVKAAWFDTREEELVWLADEL--AARYHGRDTSRPFS 431

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
           +A++      A  +   L    + +++SAG  L      + + + L  +   +D +A+  
Sbjct: 432 AAVLLRKNAEATPIHDLLIEREVPVEMSAGPGLLEVPEVADVYATLRVLVDPSDDIALLR 491

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRG---------NKNSYDIMDLKSLVLDRIATQ 499
           L+       G  +      +     +  R          + ++ +   L +LV  +    
Sbjct: 492 LLTGVRWNIGAADLQALARRVDQLSLRDRRVDSEDTENSDGDADEPTGLTALVTPQPGDS 551

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCI---------TPLVTYKTNKNSTCGNL-- 548
                V    + +  +   + V L + +               L                
Sbjct: 552 PAMATVRERLADIDRDSSRVPVGLAEALADLRGMEEFGMSEEGLQRLGDLGRELRFLRLQ 611

Query: 549 -------SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                   +    +        V    HR              + +     +        
Sbjct: 612 SLGKPLNDLVADIEQMCGVRTEVLTRYHRDRRRSIGASHLDRFAEVVRSFADLSGASPGA 671

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
            ++++        G       ++S  + +L   +++ L ++ + +       +     + 
Sbjct: 672 LVDYLRAAEAREKGLDAGEVEKRSDCVQLLTVHKAKGLEWEIVAVPHATRKTYADAVKRP 731

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
              S    + +         G A  D     G   L  +  +    +      +   L V
Sbjct: 732 TVESWTTNARI---LPSGLRGDATDDPTDITGMPVLDLSDVVDRKGVVEAEDAFKVALGV 788

Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
               +             +          +   K   P   L       + S  + L+  
Sbjct: 789 HDAKEDDRLFYVAVTRAEETLLVSGAAFNKDAKKPVDPSVALTLIRDRLAASAPECLVT- 847

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
                   +  +      K+     + G++ H     ++ +        +   ++++
Sbjct: 848 -----WSDLGMVYSKDALKRLEKAREDGSMQHREDAVMVPENPAARNDLVEAYVREL 899



 Score = 64.6 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 58/231 (25%), Gaps = 35/231 (15%)

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            L R  +        +     + +   T  L    ++                   + +E 
Sbjct: 925  LVRAAMTARDATTPDTGTLAEEWARETALLAREHREQTVPEVVVPL-----GSRLTATEA 979

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
              L  DP    ARR  +   +           RGT FHN + +        +  E+    
Sbjct: 980  VALSRDPEEF-ARRRRRPVPLEPRPYT----KRGTAFHNWVEQHYGSVGLFDEDELPGAA 1034

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
               +                   +   +   FL+     +     + V     + +    
Sbjct: 1035 DATLAD----------------PVLATLKQKFLDSVWADR---VPVSVEGSYSVILAGHL 1075

Query: 896  IHLTGFADRIDLLKSG---FVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
                G  D +            + D+KTG  P           QL++   A
Sbjct: 1076 FE--GRIDAVFHDSDDPLTGWTVVDWKTGRKPTGRDL-TDASLQLAVYRLA 1123


>gi|241759370|ref|ZP_04757475.1| exodeoxyribonuclease V, gamma subunit [Neisseria flavescens SK114]
 gi|241320315|gb|EER56634.1| exodeoxyribonuclease V, gamma subunit [Neisseria flavescens SK114]
          Length = 1099

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 94/738 (12%), Positives = 195/738 (26%), Gaps = 78/738 (10%)

Query: 35  RYDPLNPLL--LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTAD 92
           R    +PL   LA   + V ++   + L   F    G  + +         +  +     
Sbjct: 19  RIHQASPLDSVLAQEEVVVQSQGMRRYLNVFFARELGVAANL--KFSLPAGLAWQ-LMRK 75

Query: 93  LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL 152
           L+       P S       L  L      +     +++  +    L  S +    LA  +
Sbjct: 76  LVPDVPPLSPFSPEVMRWRLLDLFRSEMFQTAPEYENVRLKLESYLYSSASADYQLAGQM 135

Query: 153 ADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
           ADI D        W D      L  L +++    W             W  R ++  + S
Sbjct: 136 ADIFDQYLVYRPDWIDAWQAGKLLGLGDDED---WQARL---------W--RYLDDGSQS 181

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
            +       +  A+         + + G +   P   +L+  ++ H +  +         
Sbjct: 182 ALHRVALWEKLLAQLDKSVLPQRLFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQY 241

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQ--------------------------YSLAKLL 300
              + +   +       ++ + + HP                           Y   K  
Sbjct: 242 WGEVIDEA-QILKRGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGKDD 300

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
             L   ++D++ L   S  +Y                            P+       V 
Sbjct: 301 TLLHCLQKDIQNLIMPSERLYQ-QEEGEAGGQQALVQVHDADGNPVCVEPDKLLNDGSVK 359

Query: 361 LIEADNEREEAI----SIAIALRMSLDENKKKSALITADRNLARRVK------LELTRFG 410
           ++ A +   E       +++ L+ + D      A++T +                     
Sbjct: 360 IVAAHSPLRELQILKEELSLVLQNNPDWQPHDIAVLTPNIEPYSPFIEAVFGQAHAGSQA 419

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA----KFGFPEKYLSR 466
           +   IS             L   L+ +    +   +  L++  L          +  L  
Sbjct: 420 LPYSISDVKLSRRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLH 479

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--V 524
              A   V    ++   D  D        +        +P   + +          +  +
Sbjct: 480 ETVAGLNVHWGLDQTMRDGKDNLFTWQQAVERLALGWMLPEGGNGMWRGVSAWYSNVNQL 539

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
           D        + T            ++  W +     L+ +   +         ++  ++L
Sbjct: 540 DVFSGFAEFIRTLADMAAQWQAPANVEIWVQRCRDLLEKLFAPDTDDQYA--KQQFEQSL 597

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
           +    +               I  I R +D E+       S  +     +  R L F  +
Sbjct: 598 AKWQEEAQLAEFDGLLPCKTVIRHIRRFLDSES--QAGFLSGGITFCSMVPMRSLPFKMV 655

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL 703
            L GLN+G +P+NT    F           +             E     R  L  +   
Sbjct: 656 CLLGLNDGDFPRNTKAAVFDLIAKHPKKGDRARRDDDRY--LFLEALISAREMLYLSYIG 713

Query: 704 RE--NNIPTIASRWLQRL 719
           R+  N+     S  +  L
Sbjct: 714 RDIRNDAEFAPSSLISEL 731


>gi|307251156|ref|ZP_07533078.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306856822|gb|EFM88956.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 1114

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 100/975 (10%), Positives = 244/975 (25%), Gaps = 131/975 (13%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
           + ALL      +   +P  P      T+ V +    Q L+ +  + TG  +         
Sbjct: 13  LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 59

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134
                   T+ L   Y +  P    + + E       L RLI  +  K     + L    
Sbjct: 60  --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 115

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180
                  P     LA  +AD+ D        W              E L A+   +    
Sbjct: 116 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 174

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228
                  L+  S  W   + ++ A S                    +    E        
Sbjct: 175 -RDILANLRWQSMLWNALIEDIKADSGEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 233

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281
            I + G +        ++  ++ H    +                       +  + +  
Sbjct: 234 RIFVFGISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQ 293

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                      Q     L  +    RE + +L     +         +            
Sbjct: 294 DLDALLAEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 349

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397
            +    +   + +    + +    +   E   +   L    + N     K   +++AD +
Sbjct: 350 LNFNNEQRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 409

Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
                   +        +  I   +S     +     +    LLN         ++  L+
Sbjct: 410 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 469

Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                         +    R       +    +    D  +  +            +   
Sbjct: 470 DVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 529

Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                        +  L   ++  +   +            + ++ +W       +    
Sbjct: 530 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 585

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623
                   +    +    L+S   ++       + +    I+II  L++ +  + +    
Sbjct: 586 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 643

Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
             +  +     L  R + F  + L G+NE  +P+  + N F   +MQ         +   
Sbjct: 644 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 701

Query: 683 QAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                 E     + +   +       +N   + S  + +LL        +  + +     
Sbjct: 702 DRYLFLEALLSAQEIFYLSYIGQSATDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 761

Query: 740 DWTRKLDY------------------------TTKQPHYKRPKPFPPLEAQPRTYSF--- 772
           +++  L +                          +    ++ +P      +         
Sbjct: 762 NFSEALFWQKMVVQQPLTVFSPKNFTPQYGSYDKEWLLEQQHEPLADFLNESFDLKAEIP 821

Query: 773 -----SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
                 ++   +++P   +    L + F    ++    +++ +L      +L  + +   
Sbjct: 822 TEINLEDLIAFVSNPIKYFFNHQLGVYFRND-EESIAESEKFSLSDLDDYQLRDQLVTLE 880

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
             E     KQ      +      +   +         + F E         + + +    
Sbjct: 881 PAEREAFFKQ---EQLKGNLPIANFAKVSLQDLDDSINEFRELILPYLGESDILEIERLF 937

Query: 888 KMAIESIGIHLTGFA 902
           ++    + I L G  
Sbjct: 938 EVE--QLKIRLFGNI 950


>gi|319403513|emb|CBI77092.1| ATP-dependent nuclease subunit A [Bartonella rochalimae ATCC
            BAA-1498]
          Length = 1152

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 87/827 (10%), Positives = 196/827 (23%), Gaps = 115/827 (13%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAG 234
             A     I  K +T+     N           +            ++ +      I++  
Sbjct: 340  AAFQLCDIYLKIYTDLKKANNLLDFDDLIERTLYLLQHKGASQWVQYKLDRGIDHILLDE 399

Query: 235  STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
            +  + P   +++  +A           N   V    D       +     ++        
Sbjct: 400  AQDTNPKQWQIIQLLAQEFFTGHSQRTNTRTVFAVGDEKQSIYSFQGAVLENFAENGRII 459

Query: 287  TYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
                             YS     D L       +   N           + +       
Sbjct: 460  QKKVKQVEQKFEKIQLNYSFRSTADVLKSVDLVFESPENYKGLSAEHVKTVHEPIRVHSP 519

Query: 337  SDMRNTDILENKIPN-IQKCFSDVALIEADN---EREEAISIAIALR--------MSLDE 384
             D+   D +  K         S V  ++        + A +I+  L+          L  
Sbjct: 520  GDVIIWDAISKKTNEFPDDWLSTVDHLDTPQICLAEKIAETISSWLKNGEMLPAKKRLLR 579

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                  L+         +   L    + +  +  + L+T +    L +L   + +  D +
Sbjct: 580  AGDIMVLVRKRDQFVPALSRALKLRHVPVAGADRLQLTTHISVRDLMALARFVLQPQDDL 639

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI---ATQKN 501
            ++A ++K PL      E Y    +                   +  ++ +R+    T  +
Sbjct: 640  SLACVLKSPLFSLSENELYQLAVQRT--GSLWESLSTHSSSHAVFKIIFERLNTYRTLVD 697

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
               V  + S +   DK    ++     +    L  +  +  +                 L
Sbjct: 698  KMPVFEFYSYILNNDKGRQKIIARLGTEANEVLDAFIDHTLTIQKTG-----LPGLQAFL 752

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            + + ++E      L      +    +    +     ++   +  +D              
Sbjct: 753  EILSINEPEIKRELD-----QNCEEVRIMTVHAAKGLEGAVVFLVD-------------- 793

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                      G+           +   L +             ++     L+        
Sbjct: 794  ---------PGSAIWHPQYAPHFLKCSLGDKQVFIWRPNAQHHTKHFDKVLSRLKERAEE 844

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                  +         +                   +L+          +K   +    W
Sbjct: 845  EYKRLLYVGMTRAEDRLIIC---GYTNQKETPNTWLQLVKKALKPHAVPIKGPAEDITAW 901

Query: 742  TRKLDYTTKQP----------HYKRPKPFPPLEAQPRTYSFSEIKQ------------LI 779
               +  +   P              P P       P   + S+  +              
Sbjct: 902  RYCITSSCPAPMYQEISCETHQIFPPLPAFFHNKVPTELTLSKPLRPSVVGINDTKTEFF 961

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                      +L               + G   H ++  L      K        +    
Sbjct: 962  PQKERFSISPVLGEKNTKKTF----SIEYGNFIHQLLQHLPNYPPTKRQDYAQFYLNTKA 1017

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
             SH+ K      +  IW      I  +     E   S++    V +   + I      ++
Sbjct: 1018 -SHWHKTQREKALHHIW-----TILDN--PDLEPFFSNLSHAEVALMGIVKINGKEQMVS 1069

Query: 900  GFADRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALK 945
            G  DR+ +  +  V   D+KTG         +K    Q++L    L+
Sbjct: 1070 GQIDRLCITHN-SVFFADFKTGLSPENDTDIKKHHLLQMALYQKLLQ 1115


>gi|73748458|ref|YP_307697.1| hypothetical protein cbdb_A602 [Dehalococcoides sp. CBDB1]
 gi|73660174|emb|CAI82781.1| conserved domain protein [Dehalococcoides sp. CBDB1]
          Length = 379

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 89/266 (33%), Gaps = 36/266 (13%)

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
             R  S+S+I Q  + P       I  L  +            GT  H+      +  +  
Sbjct: 1    MRPLSYSQIDQYQSCPLKYRFLYIDGLKPLEK-----GYFSFGTTLHDCAEHFFR--VKV 53

Query: 827  NTPEINHLMKQIIDSHFEKENLPP-HIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVN 884
              P     + +   SH+         I+  +R L  +I   F       ++     + V 
Sbjct: 54   PPPLSLEKLMEYYQSHWRSGGYESVEIEENYRQLGREILAEF---HRIHRADFHMPLAVE 110

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAA 943
                + ++  G+ LTG  DR+D L SG + I DYK+       E  Q   + QLSL   A
Sbjct: 111  HQYTVNLD--GVKLTGKIDRVDKLPSGELCIVDYKSNKDLFSAEYVQD--NLQLSLYQLA 166

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKID-CITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
            ++   +       V  L    L+    +     + +    A  L  +    + + +    
Sbjct: 167  VEQIWY-----LPVGELCLYHLRSNTVMRCPARSKEVIADARRLVLEVAGKIEKAI---- 217

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028
                 F +     E +    ++ HL 
Sbjct: 218  -----FPA----CENNFCPCDFAHLC 234


>gi|168463849|ref|ZP_02697766.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633402|gb|EDX51816.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 1123

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 104/941 (11%), Positives = 238/941 (25%), Gaps = 113/941 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNIEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A   F   +M          +    
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAPLGF--DLMSQKTMRGDRSRRDDD 712

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGG---------------- 724
                E     +  L  +   R   +N     S  +Q L+   G                
Sbjct: 713 RYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDES 772

Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRTY 770
                    R    + +  +     +Q  Y R                  P     P T 
Sbjct: 773 EARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPETL 832

Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827
           +   +++    P   + +  L+++F     + PD       G   + +  +L+   + ++
Sbjct: 833 TLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEED 892

Query: 828 TPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
             E      +   +  +    E          + L  ++  
Sbjct: 893 DAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|165924171|ref|ZP_02220003.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334]
 gi|165916386|gb|EDR34990.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334]
          Length = 1110

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 93/813 (11%), Positives = 207/813 (25%), Gaps = 107/813 (13%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239
            L I +        E NA       +  +RA  +                 ++I     + 
Sbjct: 357  LPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQPSDYALQLDEQIQHLLIDEFQDTS 416

Query: 240  PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
                 L+  +       +G  +    D       +     +      +        Q + 
Sbjct: 417  IIQFHLIEKLITGWQPKDGRTLFLVGDPMQSIYRFRQAEVRLFLQVKNEGLGE--IQLTP 474

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              L +    ++  +             +     +F   + S + +     +   N     
Sbjct: 475  LILRNNFRSQKNLIDWF----------NQTFEPTFPKEENSHLGSISYSHSFATNNSINQ 524

Query: 357  SDVALIEA--DNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINI 413
             ++        N   EA  I   ++    +  +K  A++   R+    +   L    I  
Sbjct: 525  KNINFYSLLNANALNEATQIVKIIQGCRSENPEKTIAILVRSRSQLIEITPALRSADIPF 584

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
                   L+  +    L SL  A+  L D +A   L++ P       + +          
Sbjct: 585  HAVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYA---- 640

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                                                  ++ ++     +L       I  
Sbjct: 641  --------------------------------NDKPIWVALQNASEIAVLTSDGKNRINR 668

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            + +  +        L ++ W +   T L             L   +    L         
Sbjct: 669  IFSILSAAFDNRDRLLLAQWIEGIWTAL--GGPACLSNSTELMNTQAYFQLLETLEN--- 723

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                        ++ +T+ ++    +   +  + + I+   +++ L FD +IL GL +  
Sbjct: 724  ---------DFTLERLTQKLNQLYAQIDTDAKNPIQIMTIHKAKGLEFDHVILPGLEKRP 774

Query: 654  WPKNTAKNPFLSRVMQSD------LNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLREN 706
               +     +L R  ++         LK A +      +  +     +     TR L   
Sbjct: 775  RSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKRIEKEKTTNEITRLLYVA 834

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                  S  L   L          L  +G        ++ +   Q  +++          
Sbjct: 835  ATRAKESFHLLTSLNKEDPQSPIKLPPKGS-----FAEILWPVCQEAFEQSIIIFDDTLP 889

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD--RGTLFHNIITELIKKRI 824
             +      +++L +D    +  + L              +    G + H  +  +  + +
Sbjct: 890  SQKGGLKLLRRLTSDWAPPFILKTLPSAESKPLTPFTPASSKRLGIVIHETLERIANEGL 949

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI--F 882
                 E     K        +    P     + +         L   +       +    
Sbjct: 950  ESWDKERIENNKSFWQRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQK 1009

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDP 935
               P  + +E   I      D   + ++G   I DYK+            +         
Sbjct: 1010 SEYPITL-VEDKKIK-HFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEA- 1066

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
            QL   A      +F  +D R +    Y  L Q 
Sbjct: 1067 QLQQYA-----NAFHALDSRPIKLGLYFPLCQG 1094


>gi|204928078|ref|ZP_03219278.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204322400|gb|EDZ07597.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 1123

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 105/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKSVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPELPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLNPKDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|317493214|ref|ZP_07951637.1| exodeoxyribonuclease V [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918874|gb|EFV40210.1| exodeoxyribonuclease V [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 1133

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 113/989 (11%), Positives = 245/989 (24%), Gaps = 128/989 (12%)

Query: 7   NVFTIAPS--SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            +FT+  S      +++I AL+ G  ++N               I V +    Q L+ E 
Sbjct: 10  RMFTVYHSNQLDLLKQLIAALIEGQPLQNPFEQE---------VILVQSPGMAQWLQMEL 60

Query: 65  IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
            +  G  + I      L           ++         S      +L  L+     +  
Sbjct: 61  AKQFGIAANIE---FPLPATFIWNLFTQVMPGIPKESAFSKDAMTWKLMWLLPKMLEQEA 117

Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLL 183
                L     LS          LA  +AD+ D       +W  +               
Sbjct: 118 ----FLPLARYLSDDEDRRKHFQLAARVADLYDQYLVYRPEWLQIWERGEYVDGLDESQQ 173

Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPA 241
               L +A K +T  L +             ++   +           + I G     P 
Sbjct: 174 WQAPLWVALKEYTAELKQPEW-HRANLYEKFIQTLEQATACPQGLPKRVFICGIAALPPI 232

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWN--------------------TITEKSTNI 281
               +  +  H +  ++      +    I +                     I+      
Sbjct: 233 YLDALKALGKHIDVHLMFTNPCRYYWGDIQDYAFLAKLQSRKRRHHIQRQQEISLFRDPQ 292

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR--------------SMVI 327
           ++S        Q     LL        D   L                           +
Sbjct: 293 SASELFKPDGEQDLSNPLLASWGKLGRDHMYLLAQREPQEVHAFVDLTEDTLLTRIQRDL 352

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN-- 385
            +        D        +    +++    +++    + + E   +   L     E+  
Sbjct: 353 LELEDHSQIVDSPERLNSSSGKRLLERGDRSISVNLCHSPQREVEVLHDRLLDLFAEDPS 412

Query: 386 --KKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              +   ++ AD +        +         +   IS               +LL    
Sbjct: 413 LTPRDVIVMVADIDSYTPFIQAVFGNAPRERYLPFAISDRSARQAHPVIQAFLTLLELPN 472

Query: 439 KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK------- 489
                  + TL++ P     FG  E+ L R ++ ++   +R   +  ++  L        
Sbjct: 473 SRFTSEHVLTLLEVPALAAHFGISEEGLRRLRHWVDESGIRWGLDDDNVRALDLPATGQH 532

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKNSTCGNL 548
           +                           + +  L+  +   +  L+      +    G  
Sbjct: 533 TWQFGLTRMLLGYAMDSRCGDWNGVLPYDESSGLIAELAGQLADLLMRLSVWRTRLSGEY 592

Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            + +W  L    L      E             +    +    I              D 
Sbjct: 593 RVQEWQPLCREILNEF--FEQDSETEAVQALIEQQWLKVIGYGISAEYPQAIPISILRDE 650

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
           +T  +D E +  +      +     +  R + F  + L G+N+G++P+  A   F     
Sbjct: 651 LTSRLDNERISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGIYPRTIAPLGFDLMAN 709

Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD 726
           +     ++             + +    L  +   R   +N P   S  +  L+      
Sbjct: 710 KVQRGDRSRRDDDRYL-FLEALLSAQERLYISYIGRSIQDNAPRYPSVLVSELMEYIAQS 768

Query: 727 F---------FDNLKKRGQCYLDWT----------------------RKLDYTTKQPHYK 755
                      D+  KR   YL                           L    +     
Sbjct: 769 HHLPGDETLDVDSSAKRVMEYLQIQHPRVPFASENYAVGSESQSYASEWLPAARRSGEAH 828

Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
           +         +  T +  E+ +    P   + +  L ++F+    + PD           
Sbjct: 829 QEFALALPLEEFSTITLDELIRFYRHPVRAFFQMRLGVNFVLEETELPDEEPF------T 882

Query: 816 ITELIKKRINKNTPEIN---HLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLEHE 871
           +  L + ++N             + +         LP      ++     +         
Sbjct: 883 LDNLSRYQLNSQLLNQLIDGDEAETLFRRFRSAGGLPYGAFGELYWEKQQEEMSEVAAKV 942

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
            + + +          ++     G+ LTG
Sbjct: 943 REHRQAG------HSIEIDYMLGGVRLTG 965


>gi|312880760|ref|ZP_07740560.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
 gi|310784051|gb|EFQ24449.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
          Length = 976

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 99/757 (13%), Positives = 193/757 (25%), Gaps = 104/757 (13%)

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----------K 388
            +   D        +    + + ++EA + R E  ++A  L +    + +          +
Sbjct: 243  LDAADQFGVLPARLDSPPATLRILEAGDRRFELETLARELALWAAGDPEALLPPPFPGFE 302

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            +  ++ D +      L L R+GI   +  G  +  T    +     +A            
Sbjct: 303  AVGVSVDPHQGEAAGLVLERYGIPHVLRGGGSVGETDLGRLPRLCADAAGSGWPTERTLR 362

Query: 449  LVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            L+  P L    FP         + E       K     +D    +       +     P 
Sbjct: 363  LLSLPCLGGASFPAAQARGTAPSGEEEWTAFLKGFPPFLDRFRRLRGFARDLQGGGTPPK 422

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                       L   LV         L           G  ++      T    + +   
Sbjct: 423  --------LLRLLRDLVSRDTPWTRALADLAGEGAERDG--AVHRLASATAELDRKILSL 472

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
            E    P                  +   +    +  + +  +    +             
Sbjct: 473  EEATPP------------------LGEAAQNPLSGGDAVAFLETWAEEARTSQAQPLRGA 514

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE--------- 678
            L +       L +    +L G     WP    ++  L+   +  LN   AE         
Sbjct: 515  LTVYPGSPPVLADHRWFVLTGATAPAWPGALKESALLADGDRHSLNGLEAETLGLERTHL 574

Query: 679  ------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                  +   +A     +  G    + TR L+++    +     +  LV   +      +
Sbjct: 575  PVLSEVRVQREALFRRLVLTGREGCLLTRPLQDDQGRPLPPTPFEAPLVDQLSQEEPPRR 634

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRP--------KPFPPLEAQPRTYSFSEIKQLINDPYA 784
            +     +     L    + P   R          P           +FS + +    P+A
Sbjct: 635  RPLSQLIPLAGPLFEDAEGPLPSRRLLRGVRGNAPQEGRGEPRTRGTFSGLDRFAGCPFA 694

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF- 843
             +  + L L          D    G   H +       +  +    +     ++ +  F 
Sbjct: 695  FWCEQELGLAPF--PTGRFDPARVGNALHELWQRAWDPQSPQRAQGLEAAAVRLFEEVFR 752

Query: 844  -----------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                       +       + +  +           + E           +    +    
Sbjct: 753  DPDRGYRELLCDPALARHALRLREQARRLGAVQD-AQEERLQALFPRGGVLRETLEPQAV 811

Query: 893  SIGIHLTGFADRID--LLKSGFVDI-TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
               +   G  DR D     +G V +  DYK G     +  Q     QL    AAL     
Sbjct: 812  LGSVSFRGRCDRADLWETPAGTVAVLLDYKLG---SSKRYQTH--LQLPAYVAALTESPP 866

Query: 950  SQIDCRKVANLFYIRLKQKF--------------KIDCITNDKKKYSADELSEKSLKNLI 995
                   +A   Y+ L                       +  K K S + L E++ K + 
Sbjct: 867  EGF-PFPLAGYGYLCLGDGGFAGRFAQGHEDLAEAYRGTSPRKGKVSFESLQEQAWKTMG 925

Query: 996  EIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
             +   L++G  P     R    S     +  L R  E
Sbjct: 926  ALAEALESGRYP----ARYDSPSCPGCPFGGLCRRGE 958


>gi|261381358|ref|ZP_05985931.1| exodeoxyribonuclease V, gamma subunit [Neisseria subflava NJ9703]
 gi|284795674|gb|EFC51021.1| exodeoxyribonuclease V, gamma subunit [Neisseria subflava NJ9703]
          Length = 1099

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 88/727 (12%), Positives = 193/727 (26%), Gaps = 76/727 (10%)

Query: 44  LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           LA   + V ++   + L   F    G  + +         +  +     L+       P 
Sbjct: 30  LAQEEVVVQSQGMRRYLNVFFARKLGVAANL--KFSLPAGLAWQ-LMRKLVPDVPPLSPF 86

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           S       L  L      +     +++  +    L  S +    LA  +ADI D      
Sbjct: 87  SPEVMRWRLLDLFRSEAFQTAPEYENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYR 146

Query: 164 KKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217
             W D      L  L +++    W             W  R ++  + S         + 
Sbjct: 147 PDWIDAWQAGKLLGLGDDED---WQARL---------W--RYLDDGSQSAPHRVALWEKL 192

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
            A+         + + G +   P   +L+  ++ H +  +            + +   + 
Sbjct: 193 LAQLDKSVLPQRLFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQYWGEVIDEA-QI 251

Query: 278 STNITSSNTTYSTHPQ--------------------------YSLAKLLDFLDIKREDVK 311
                 ++ + + HP                           Y   +    L   + D++
Sbjct: 252 LKRGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGRDDTLLHCLQNDIQ 311

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
            L   S  +Y +    + +                   P+       V ++ A +   E 
Sbjct: 312 NLIMPSERLYQQEEGEAGAQ-QALVQVHDADGNPVCVEPDKLLNDGSVKIVAAHSPLREL 370

Query: 372 I----SIAIALRMSLDENKKKSALITADRNLARRVKLE------LTRFGINIDISAGIPL 421
                 +++ L+ + D      A++T +                +    +   IS     
Sbjct: 371 QILKEELSLVLQKNPDWQPHDIAVLTPNIEPYSPFIEAVFGQEHVGSQALPYSISDVKLS 430

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477
                   L   L+ +    +   +  L++             +  L     A   V   
Sbjct: 431 RRQPLLYALAQTLDLLESRFEVDKVLPLLESWLVLQRFGLSEEDVPLLHETVAGLNVHWG 490

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHILQCITPLV 535
            ++   +  D        +        +P   + + +        +  +D        + 
Sbjct: 491 LDQTMREGKDNLFTWQQAVERLALGWMLPEGGNGMWQGVSAWHSNVNQLDVFSGFAEFIR 550

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           T            ++  W +     L+ +   +         ++  ++L+    +     
Sbjct: 551 TLADMAAQWQEPANVESWVQRCRDLLEKLFAPDTDDQYA--KQQFEQSLAKWQEEAQLAE 608

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                     I  I R +D E+       S  +     +  R L F  + L GLN+G +P
Sbjct: 609 FDGLLPCKTVIRHIRRFLDSES--QAGFLSGGITFCSMVPMRSLPFKMVCLLGLNDGDFP 666

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712
           +NT    F           +             E     R  L  +   R+  N+     
Sbjct: 667 RNTKAAVFDLIAKHPKKGDRARRDDDRY--LFLEALISAREMLYLSYIGRDIRNDAEFAP 724

Query: 713 SRWLQRL 719
           S  +  L
Sbjct: 725 SSLISEL 731


>gi|5853098|gb|AAD54314.1|AF176618_1 RecC1004 [Escherichia coli]
          Length = 1121

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 113/1086 (10%), Positives = 254/1086 (23%), Gaps = 166/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
               LL        D   L +           +                +           
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D       
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDKNVSASV 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FA--GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 709

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 710  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 769

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 770  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 829

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 830  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 889

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 890  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 937

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 938  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 981

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 982  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1024

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1025 GYREGM 1030


>gi|156932702|ref|YP_001436618.1| exonuclease V subunit gamma [Cronobacter sakazakii ATCC BAA-894]
 gi|156530956|gb|ABU75782.1| hypothetical protein ESA_00487 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1123

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 104/975 (10%), Positives = 241/975 (24%), Gaps = 124/975 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ A++   + +    DP  P       + V +    Q L+    +  G  + I     
Sbjct: 11  DVLEAIMEFIVEQQPLPDPFEPE-----IVLVQSTGMAQWLQMSLAQKFGIAANIE---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         +      +L +L+         +         L   
Sbjct: 63  PLPASFIWDMFVRVLRDIPQESAFTKQNMSWKLMKLLPGM----LTLPDFDMLRHYLHDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                   LA  +AD+ D       +W     A                L  A    T  
Sbjct: 119 EDKRKLFQLASRVADLYDQYLVYRPEWLTRWEAGDVVDGLGEPQRWQAPLWRALVEHTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             +R       +       + I G +   P   + +  +  H +  
Sbjct: 179 LGQPQW-HRANLYQRFIRTLETAESRPEGLPARVFICGISALPPVYLQALQALGKHIDVH 237

Query: 257 IVLPGLDCHIPTAIWN-------------------TITEKSTNITSSNTTYSTHPQYSLA 297
           ++      +    I +                   T      + T+         Q    
Sbjct: 238 LLFTNPCRYYWGDIQDPAFLARLLSRKRKLHAKEGTAPLFKDSETAPALFNEEGEQEVGN 297

Query: 298 KLLDFLDIKREDVKRL---------------GNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     + +             
Sbjct: 298 PLLASWGKLGRDYTYLLSGLERFEEMDVFVDLEPDNLLHSLQFDLLELRNQAQAGVTLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +      +++    + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 FERSDGKRLLDPDDRSISVHVCHSPQREVEILHDQLLQMLEADPQLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         +   IS               +LL+          +  L++ P
Sbjct: 418 YSPFIQAVFGSASQERYLPFAISDRRARQAHPALQAFITLLSLPDSRFVSEDVLALLEVP 477

Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
              A+F   E+ L   +  +    +R   +  ++ +L        +              
Sbjct: 478 SLAARFNISEEGLRFLRQWVNESGVRWGIDDDNVRELALPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
             H     S    + +  L  + +      L+     +        +++W  +    L +
Sbjct: 538 ESHLGEWQSVLPYDESSGLIAELVGHLAELLMQLNLWRKGLSQARPLAEWLPVCREMLDS 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
               +      L   E  +   ++  + I      +       D + +++D E +  +  
Sbjct: 598 FFAPDAETEAALALIE--QQWQAIIEQGISAHYEDEVPLTLLRDELAKMLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R + F  + L G+N+GV+P+  A   F   +M          +    
Sbjct: 656 AGP-VNFCTLMPMRSIPFKVVCLLGMNDGVYPRTLAPLGF--DLMSQKPQRGDRSRRDDD 712

Query: 684 AAHDFEMANGT-RHLIYTRSLRENNIPTIASR---------WLQRLLVLGGTDFFDNLKK 733
                E      + L  +   R     +             +L +   L G +  +  + 
Sbjct: 713 RYLFLEALISAQQQLYISYIGRSVQDNSEKYPSVLVQELVDYLAQSHYLPGDEALNCDES 772

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE------------------- 774
             +      R    T       +P       A+    + SE                   
Sbjct: 773 AKKVKAHLMRLYPRTPFDAENFQPARETQSYAREWLPAASEQGEAHPEFIKPLTPVTLEE 832

Query: 775 -----IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL----FHNIITELIKKRIN 825
                 ++    P   + +  LK++F     + PD           +H     L      
Sbjct: 833 LPFEQFQRFWRHPVRAFFQLRLKVNFRTEESELPDAEPFTLDSLGRYHMNQQLLNTLVEQ 892

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
           ++   +    +   +                      ++   L    +            
Sbjct: 893 QDPEALYRRYRAAGE--LPYGAFGELFWESQLQEMQALAERVLA---ERDGG-------E 940

Query: 886 PAKMAIESIGIHLTG 900
             ++A+E   + +TG
Sbjct: 941 SQEIALELGNVEMTG 955


>gi|298526678|ref|ZP_07014087.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A]
 gi|298496472|gb|EFI31766.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A]
          Length = 921

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 83/706 (11%), Positives = 190/706 (26%), Gaps = 75/706 (10%)

Query: 4   KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58
           ++  V    P          A    T+     +   N       V     T++A     +
Sbjct: 27  EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 86

Query: 59  ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
            +RS    + G        +   P++ +        F   LL  Y L  P+    RLL  
Sbjct: 87  RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 141

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
             L  +  + +      L  +   +   S    +W    L + +           +L  L
Sbjct: 142 TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 199

Query: 173 KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216
            +      +                      L        ER+             +  R
Sbjct: 200 VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 259

Query: 217 AEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269
             A         +     +++     +  A   ++S++      +G  +    D      
Sbjct: 260 LAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 319

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
            W   +  +    +++   S      + +LL       + ++    +S E   RS+ +  
Sbjct: 320 GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSVAVRA 379

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLD 383
                               P        V      + + E   IA  LR       +  
Sbjct: 380 LR------------------PRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADG 421

Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                +A++      A  +   L   GI  ++     L +    + + ++L  +      
Sbjct: 422 VKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAG 481

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            A   ++  P  + G  +      + AL L     +  S + + + +          +  
Sbjct: 482 AAAMRVLTGPRWRLGARDLAAL-WRRALTLSGESPSTASPESIAMAASADADNPCLADAI 540

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
             P      S         L   +      L     +  +    +   D       C   
Sbjct: 541 SDPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVD-------CEVR 593

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPK 621
                          +    + + +++     S     A  + ++D+   + +G      
Sbjct: 594 ASAPVSGGWAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAEL 653

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                 + +L    ++ L +  + +  L+ GV+P   +++ +L+  
Sbjct: 654 TVACDRVQVLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDP 699


>gi|293412167|ref|ZP_06654890.1| exodeoxyribonuclease V [Escherichia coli B354]
 gi|291468938|gb|EFF11429.1| exodeoxyribonuclease V [Escherichia coli B354]
          Length = 1122

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 113/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                    L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             +L +             +                + I G +   P   + +  +  H  
Sbjct: 177  HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
              ++      +    I +              ++                          
Sbjct: 236  IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298  --KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP---------------PDTSDMR 340
               LL        D   L +           +  +                         
Sbjct: 296  GNPLLASWGKLGRDYIYLLSDLEGSQELDAFVDVTPDNLLHNIQSDILELENCAVAGVNI 355

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                  +    +    + +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356  EEFSRSDNKRLLDPLDNSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397  NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416  DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452  HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
             P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476  VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503  THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536  AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596  NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654  FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682  GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                   E     +  L  +   R   +N     S  +Q L+   G              
Sbjct: 711  DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 728  -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                    + G+        L   ++          P     P 
Sbjct: 771  ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
            T     +++    P   + +  L+++F     + PD       G   + I  +L+   + 
Sbjct: 831  TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 826  KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++  E      +   D                     +++   +      Q         
Sbjct: 891  QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938

Query: 885  IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939
               ++ +   G+ +TG             G              P   +  +    QL L
Sbjct: 939  QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            E     A                           +  D +       +E++L  L +++ 
Sbjct: 983  EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLID 1025

Query: 1000 LLQNGE 1005
              + G 
Sbjct: 1026 GYREGM 1031


>gi|254480724|ref|ZP_05093971.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
            HTCC2148]
 gi|214039307|gb|EEB79967.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
            HTCC2148]
          Length = 1115

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 95/864 (10%), Positives = 191/864 (22%), Gaps = 86/864 (9%)

Query: 124  PDIIKDLYPESPLSLPISPANAIWLAKNLADI--IDIIETEEKKWEDLHALKNEKYGMWW 181
             D          + L         LA  L  +  +  ++     W+ +  L +    +  
Sbjct: 298  GDDDAKARKAHFVDLVARMGQVKGLAGELGGLAWLPRMDNHNDAWQMVLHLSHVLPLLAA 357

Query: 182  LLAADF----LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
             L   F    L   S+     L  L            +    EH        I+I     
Sbjct: 358  CLLLVFERRSLVDHSQVALSALDALGEDDEPTELALRLDYSIEH--------ILIDEFQD 409

Query: 238  SIPATARLMSTVANHPNGA---------IVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            +      L+S +                 +    D       +                 
Sbjct: 410  TAINQYNLVSKLTRGWGQHNALNPAAPRTLFIVGDGMQSIYGFRNANVGLFLKARQEGFN 469

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                Q    +     +    D              ++   +       +D         +
Sbjct: 470  GVTLQALSLRCNFRSEQGIVDWVNDSFRDAFPAEDNVYRGRVSF----TDAIAVKPAGAE 525

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
            +      F          E+E    +        D N    A++   R     +   L +
Sbjct: 526  LAVSLNGFWGEQ----AKEQEAQWLVEQVALGLADPNLGSIAILGRSRPQLAPILELLRQ 581

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
              I         L+ +     L +L  A+    D +A   +++ P       +       
Sbjct: 582  RDIPFASQEMDALAGSPAIVDLMTLCRALVNPGDRVAWYAVLRAPWCALNLADMKCLADS 641

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                                + L     A  K            +++ ++        + 
Sbjct: 642  AQDPRWQNVYGALCN-----RELPAGLSAEGKQRLLHVGQCLLWAQQRRDRLG-----LR 691

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
              I  L  +            ++D  +     L  +   E + L   W E+    L +  
Sbjct: 692  AWIEQLWLHLGGPACFTQQRFLADAERFL--SLLQLADAEGKGLNIDWLEQRISRLYASG 749

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                     +  +  + ++    LI       + +      IL   E      +   +  
Sbjct: 750  DAPDARLQVMTLHKSKGLEFDWVLIPALARATRGDSRD---ILLWDEHNSKTGELGFMLA 806

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
             ++    K      FL +  +    L+T           +  A      +   +      
Sbjct: 807  ADDHSDDKTPGLYNFLKKQRKEKSRLET-------TRLLYVGATRAVKKLTLSACLGGGE 859

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                               F            W                +P   +     
Sbjct: 860  DAGPQD----------EPEFKPPGDGALLAPIWATFERQAVVHVPMTSVQPQSKISRGLL 909

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S    L   P        +    +            GT+ H ++ +L    +    
Sbjct: 910  RLSQSP-ATLPLMPKDSPQGANIPDPALNWLD-----RYVGTVIHEVLEQL--SLLASLP 961

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIP 886
             E+   + ++         L                 S L  E   +   S +    +  
Sbjct: 962  DELPVRLAELARHSLSSMGLAEEQLEAAFGRVSHAVASTLADESGGRWVLSAQHAQAHSE 1021

Query: 887  AKMAIESIGIHLTGFADRIDLLKS-GFVDITDYKTGDN------PKKETAQKL-IDPQLS 938
              + I+  G       DR  + +  G   I DYK+               +      QLS
Sbjct: 1022 LTLTIQEAGQPRDIVIDRTFVDRDTGIRWIIDYKSSTPEAGVSAASFLQVEAGRYKNQLS 1081

Query: 939  LEAAALKAGSFSQIDCRKVANLFY 962
                     + S+I    V    Y
Sbjct: 1082 CY-----RDAMSEIGPEPVRCALY 1100


>gi|168231090|ref|ZP_02656148.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194472348|ref|ZP_03078332.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194458712|gb|EDX47551.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205334482|gb|EDZ21246.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 1123

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 106/942 (11%), Positives = 242/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+     KL D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLP----KLLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|329847172|ref|ZP_08262200.1| double-strand break repair helicase AddA [Asticcacaulis biprosthecum
            C19]
 gi|328842235|gb|EGF91804.1| double-strand break repair helicase AddA [Asticcacaulis biprosthecum
            C19]
          Length = 1174

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 101/912 (11%), Positives = 211/912 (23%), Gaps = 122/912 (13%)

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
            A   A  +D +  E     D   LK  +     L A    +I S  +        A    
Sbjct: 314  APADARYLDRMAEEAVALAD--RLKAVEIASNTLDALRLFEIFSFVYLSEKRGEGALDFT 371

Query: 209  GYQIALMRAEAE--------HLMKGTKGPIIIAGSTGSIPATARLMSTVAN--------H 252
                   +   +        H + G    I++  +  +      ++  +++         
Sbjct: 372  DLITYTKKLLDDPTHALWVLHKLDGGLDHILVDEAQDTSEEQWIIVDALSSDFFSGEGVT 431

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH--------PQY--SLAKLLDF 302
                 +    D       +     +         +   H        PQ   S   L + 
Sbjct: 432  RTIRTLFAVGDEKQSIYGFQGADPREFLKARGQISQRAHDGGANLVEPQLIDSWRSLPEI 491

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            L       K         +    +   +     +  +    ++            D    
Sbjct: 492  LGFVDAVFKADDVQHALNFSSDPIQHIARRSDASGVVELWPVVRPMAAVETTADDDDEQA 551

Query: 363  EADNE------REEAISIAIALR----------------MSLDENKKKSALITADRNLAR 400
              D+       +  A  IA  +R                           L+    +L  
Sbjct: 552  ALDDPGRNPPSKRLAKQIAATIRSEITAGRTIYDKALKRRRTVHAGDVLILVRKRDHLFE 611

Query: 401  RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
             +  EL   G+ +  +  + L   +    L +LL    +  D +++A +++ PL      
Sbjct: 612  HIIRELKIAGVAVSGADRLKLGDHIAFQDLRALLRVCLQPMDALSLACVLRSPLCDLSEQ 671

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
            + +         +       +              +   +           L+       
Sbjct: 672  DLFDLAHDRQ--MPLWSALLHHPATEGPVHDARIFLLWAQKAAWQLTAFDFLARVLNRRD 729

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
                    + +T L     +       L++       V     + L E +       +EE
Sbjct: 730  FAGRSVRQRFLTRLGDECEDVLDETLALALKGEGSGAVALSACLDLFEFQASQIKREQEE 789

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
            G     +                             TV       +   I+         
Sbjct: 790  GGHAVRVM----------------------------TVHGSKGLEAPWVIVPIGPQYGAR 821

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
             + LIL G +  ++     K    +            E+        +     +R  +  
Sbjct: 822  KEDLILTGEDGQMYLCAGGKKADTAVTADIRDGRALREEQESL-RLFYVALTRSRDRLTV 880

Query: 701  RSLRENNIPT---------IASRWLQRLLVLGGTDFFDNLKKRGQCY-LDWTRKLDYTTK 750
             +       T         +AS    RL          N    G+ Y     R     ++
Sbjct: 881  CAYTGTKPATTGNFPSWYDLASDAFDRLETTSEVMPLVNPFDDGEYYNEALVRVHGQHSE 940

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD--- 807
                +     P +       +      +        A   +  +     +  P       
Sbjct: 941  ALTAQARLREPEVPLPDFALAMVTHDDIET--ERWAAISQMGDEDRTETEIAPSPLQTLG 998

Query: 808  ------RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
                  RG L H +   L                  I   +  ++               
Sbjct: 999  SLGRYRRGNLIHKLFEIL--------PDIAPDNRMAIAQRYLTRQADLTDAQREEMTDAV 1050

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYK 919
                +     E          V +  ++ +   G  I L+G  DR+ +     V I DYK
Sbjct: 1051 MTVLTDARFAEAFGPQSRP-EVALAGQVGVNPRGEAIMLSGRIDRLVVTDD-RVVIIDYK 1108

Query: 920  TGDNPK--KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
            +        E A      Q++   A L+         R V            ++  +   
Sbjct: 1109 SNRPAPDRAEDAAVAYQRQMAGYVALLRQV----YPDRAVEAALLW--TDGPRLTPMPET 1162

Query: 978  KKKYSADELSEK 989
              +   +E+  +
Sbjct: 1163 LVQLRLEEILSR 1174


>gi|16761772|ref|NP_457389.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143256|ref|NP_806598.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213428017|ref|ZP_03360767.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|289825127|ref|ZP_06544462.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25289147|pir||AD0865 exonuclease V chain [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504074|emb|CAD02820.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29138889|gb|AAO70458.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 1123

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 104/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   + +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLKALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|283835411|ref|ZP_06355152.1| exodeoxyribonuclease V, gamma subunit [Citrobacter youngae ATCC
           29220]
 gi|291068583|gb|EFE06692.1| exodeoxyribonuclease V, gamma subunit [Citrobacter youngae ATCC
           29220]
          Length = 1122

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 103/942 (10%), Positives = 232/942 (24%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLAQKFGIAANID---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         S      +L  L+      L D          L+  
Sbjct: 63  PLPASFIWDMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDNDDFALLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W                 +    L  A   +T  
Sbjct: 119 TDKRKLFQLSSRAADLFDQYLVYRPDWLTQWEAGRLIDGLGESQVWQAPLWKALVEYTAE 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   + +  +  H +  
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESASECPPGLPSRVFICGISALPPVYLQALQALGKHIDIH 237

Query: 257 IVLPGLDCHIP----TAIW---------------NTITEKSTNITSSNTTYSTHPQYSLA 297
           ++      +         W                 +     +  +     S   Q    
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLLARQRRHSFEERHMPLFRDSQKAEGLFNSDGEQDVGN 297

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342
            +L        D   L +           +                +             
Sbjct: 298 PMLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHNIQLDILELESRAVAGVTLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + V      + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDANDTSVTFHVCHSPQREVEILHDRLLAMLEADPMLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPAERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFNIDEEGLRYLRLWVNESGIRWGIDDDNVRELELPPTGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNLWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIITEGLGAEYGDAVPLSLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELMDYIGQSHYLPGDESLTCDQ 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASLSGKAHTDFVQPLPFEMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
            +   +++    P   + +  L++          +       G   + +  +L+   + +
Sbjct: 832 LTLETLQRFWAHPVRAFFQMRLQVNFRSEESEIPETEPFVLEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           N  E      +      +    E L        + L  +I  
Sbjct: 892 NDAERLFRRFRAAGALPYGSFGEILWDTQRQEMQLLAERIIA 933


>gi|197264701|ref|ZP_03164775.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198242903|ref|YP_002216968.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207858259|ref|YP_002244910.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|197242956|gb|EDY25576.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197937419|gb|ACH74752.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|206710062|emb|CAR34417.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326624735|gb|EGE31080.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 1123

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 105/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|282866610|ref|ZP_06275652.1| UvrD/REP helicase [Streptomyces sp. ACTE]
 gi|282558512|gb|EFB64072.1| UvrD/REP helicase [Streptomyces sp. ACTE]
          Length = 1164

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 83/779 (10%), Positives = 190/779 (24%), Gaps = 85/779 (10%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90
               +    V     T +A  EL     +         P +       G+        F 
Sbjct: 65  GTGQVAPEQVLGLTFTNKAAGELAERVRKALVAAGVTDPDVIDPDNPPGEPSISTYHAFA 124

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL  + L   +    RLL  A    +    L +         P   P    +   L  
Sbjct: 125 GRLLTEHGLRIGLEPTTRLLADATRYQLAARVLREA--------PGPYPALTRSFPTLVS 176

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKY---------------GMWWLLAADFLKIASKYW 195
           +L  +   +     + ++L     E                     + A   L   ++ +
Sbjct: 177 DLLALDAELAEHLVRPDELARHDTELLGTLAGAKLTNADLRKVPETVEARRELLGLTRRY 236

Query: 196 TERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
            E     +              AL R E   L++     +++     +  A   L+S + 
Sbjct: 237 REAKRSRDLLDFGDQIALSAELALTRPEVGTLLRDEFRVVLLDEYQDTSVAQRLLLSALF 296

Query: 251 NHPNG----AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
               G      V    D       W   +  + +    +  ++     +   L       
Sbjct: 297 GSGPGGDTGHAVTAVGDPCQAIYGWRGASVANLDDFPQHFPHADGTPATRYSL------- 349

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                     S        ++  +    D     +  +   +     +    V       
Sbjct: 350 ----------SENRRSGGRLLHLANGLADPLRAMHEGVEALRPAPGAERDGTVRCALLRT 399

Query: 367 EREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
             EE   +  +L   +       + A++        R++  L    + +++     L   
Sbjct: 400 HAEEIDWLGDSLAHLVRTGTPPGEIAVLCRTAGDFPRIQAALVDRDVPVEVVGLSGLLHL 459

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
              + L ++   +       ++  L+  P  + G  +  L   +  L +     + ++  
Sbjct: 460 PEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHHASPDDDTDP 519

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              L   V      +  +          S   ++  +            L T       +
Sbjct: 520 DRRLAEAVEGVDPAEVISLADALDTFLDSGGHQDDQLPFSAEARIRYARLATELRELRRS 579

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
             +  +    ++  T    V L            E       + +            A  
Sbjct: 580 LADPLMDVLHRVLSTTGLEVELSASPHALAARRRETLANFLDVAAGFAAVDGEATLLAFL 639

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
                    +           +T+ +L   +S+ L +D + + GL  G +P   ++  + 
Sbjct: 640 GFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGQFPSTRSREAWT 699

Query: 665 SRVMQSDLNLK------------------------TAEKYIGQAAHDFEMANGTRHLIY- 699
           ++       L+                        TA ++  +    +      R L+  
Sbjct: 700 AQSKVLPHALRGDAATLPDVCSWDAKGLKAFKDEMTAHQHTEELRLGYVTFTRPRRLLLG 759

Query: 700 --TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
                      P   S +L  L         +      +   D    +    +      
Sbjct: 760 SGHWWGPSQKKPRGPSAFLDALYDHCAAGHGEIEVWADEPGPDEENPVLREREAEQAWP 818



 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 96/832 (11%), Positives = 219/832 (26%), Gaps = 65/832 (7%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243
             AD L+   +          A      + AL+R  AE +         +  +       A
Sbjct: 366  LADPLRAMHEGVEALRPAPGAERDGTVRCALLRTHAEEIDWLGDSLAHLVRTGTPPGEIA 425

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             L  T  + P     L   D  +     + +                    + A L+  L
Sbjct: 426  VLCRTAGDFPRIQAALVDRDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLL 485

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI----------- 352
               R  +            R +V   S       D R  + +E   P             
Sbjct: 486  TGPRWRIGPRDLALLGRRARLLVHHASPDDDTDPDRRLAEAVEGVDPAEVISLADALDTF 545

Query: 353  --QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
                   D  L  +   R     +A  LR            +         +++EL+   
Sbjct: 546  LDSGGHQDDQLPFSAEARIRYARLATELRELRRSLADPLMDVLHRVLSTTGLEVELSASP 605

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
              +       L+       + +   A+      +A    ++         +  L   +N 
Sbjct: 606  HALAARRRETLAN---FLDVAAGFAAVDGEATLLAFLGFLRTAAQYEKGLDNALPGGENT 662

Query: 471  LEL-VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
            +++  A +     +D++ +  LV  +  + ++          L    +  A  L D    
Sbjct: 663  VKVLTAHKSKGLEWDVVAVPGLVTGQFPSTRSREAWTAQSKVLPHALRGDAATLPDVCSW 722

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                L  +K    +      +           + +    H   P+   +++ +  S+   
Sbjct: 723  DAKGLKAFKDEMTAHQHTEELRLGYVTFTRPRRLLLGSGHWWGPS---QKKPRGPSAFLD 779

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
             + +  +        W D      +   ++ +  + +    L              +   
Sbjct: 780  ALYDHCAAGHGEIEVWADEPGPDEENPVLREREAEQAWPLPLDETALARRRAARDTVLAH 839

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE---- 705
             + +      +    ++    +      ++     A +        +        E    
Sbjct: 840  LDALAAAPDPEAEAEAQAGPPEHGEPLYDEEFPYDAEEPPYDEDPPYDEEPPYDEEPPGE 899

Query: 706  ----NNIPTIASRWLQRLLVLGGTDFFDNLK----KRGQCYLDWTRKLDYTTKQPHYKRP 757
                +  P  A R   R+  L       +      +  +    W R LD    +   +R 
Sbjct: 900  QLFPDGGPIRADRAPGRVPHLPAARVPSDPPDLTPEEARTLASWDRDLDALAGE--LRRA 957

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
            +        P + S +++  L +DP    AR + +    P          RGT FH  + 
Sbjct: 958  RATVHDVVVPASLSATQLLHLADDPDGF-ARELARPMPRPPQ----PAARRGTRFHAWVE 1012

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
               ++            +  +        +         R    ++  +F   E   +  
Sbjct: 1013 SRFEELP----------LPMLGPDELPGGDDGDAEIADERD-LAELKEAFERTEYARR-- 1059

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937
                 V  P ++ +      + G  D +        +I D+KT  +   +        QL
Sbjct: 1060 -TPYRVETPFQIVLAGR--VIRGRIDAVYRTGD-TYEIVDWKTARHRTADP------LQL 1109

Query: 938  SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
            ++   A        +    V    ++ ++    +       +      L ++
Sbjct: 1110 AVYRLAWAE--LHGLAPEAV-GATFLYVRTGETVRPTGLPGRAELERLLLDE 1158


>gi|270307980|ref|YP_003330038.1| hypothetical protein DhcVS_558 [Dehalococcoides sp. VS]
 gi|270153872|gb|ACZ61710.1| hypothetical protein DhcVS_558 [Dehalococcoides sp. VS]
          Length = 379

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 89/265 (33%), Gaps = 34/265 (12%)

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
             R  S+S+I Q ++ P       I  L  +            GT  H+      + ++  
Sbjct: 1    MRPLSYSQIDQYLSCPLKYRFLYIDGLKPLEK-----GYFSFGTTLHDCAEHFFRIKVPP 55

Query: 827  NTPEINHLMKQIIDSHFEKENLPP-HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
                    M +    H+  E       +  +R L  +I   F             + V  
Sbjct: 56   PP--SLEKMLEYYRLHWRSEGYESVEAEENYRQLGKEILAEFCRIHSAD--FHMPLAVEY 111

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAAL 944
               + ++  G+ LTG  DR+D L SG + I DYK+       E  Q   + QLSL   A+
Sbjct: 112  QYTVNLD--GVKLTGKIDRVDKLLSGELCIVDYKSNKDLFSSEYVQN--NLQLSLYQLAV 167

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK-KYSADELSEKSLKNLIEIVTLLQN 1003
            +   F       V  L    L+    + C +  K+    A +L  +  + + + +     
Sbjct: 168  EQIWF-----LPVGELCLYHLRSNTAMRCSSRSKEVITDARQLVLEVAEKIKKAI--FPA 220

Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLA 1028
             E  F              ++ HL 
Sbjct: 221  CENGFCP-----------CDFAHLC 234


>gi|261868486|ref|YP_003256408.1| exodeoxyribonuclease V subunit gamma [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413818|gb|ACX83189.1| exodeoxyribonuclease V, gamma subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 1138

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 99/958 (10%), Positives = 226/958 (23%), Gaps = 129/958 (13%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
            V +    Q L+ +     G  +        +      +  A+ LL    +   +    +
Sbjct: 45  LVQSPGMAQWLQLQIAGQKGIAANFA---FPMPASFIWQLYAENLLDVAQSNQFNKNAMM 101

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW--- 166
             L RLI  +     D ++ L      S          LA  +AD+ D        W   
Sbjct: 102 WRLVRLIPQYLQ--QDALRPLRHYLAYSAQSEQFKLYQLAGKIADLFDQYLVYRPDWISA 159

Query: 167 ------EDLHALKNEKYGMWWLLAADFL-------KIASKYWTERLVELNASSPVGYQIA 213
                 +D+      +  +        +        I  +     +        V ++  
Sbjct: 160 WEHQQDDDIRRQIESQLSLNNERLLAQITQNIAWQGILWRALVRAVKADTGLDLVQHRAH 219

Query: 214 LMRAEAEHLMKGTKG----PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
           L +   E L +         + I G      A   +   ++ + +  +            
Sbjct: 220 LHQLLLEKLRENRPHFLPERLFIFGIPALPKAYLEIFQAISQYCDVHLFFNNPCEEYWGD 279

Query: 270 I-----------------WNTITEKSTNITSSNTT--------YSTHPQYSLAKLLDFLD 304
           I                 +N   +   +   +                Q     L  +  
Sbjct: 280 IVDPKFVEKLALRTCTDYFNQADKPLLSAEQATQAQQHWELTYAQEKLQVGNPLLASWGK 339

Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP-NIQKCFSDVALIE 363
             R+    L  +        + I+   L                 P N ++    +    
Sbjct: 340 PGRDFAYLLAQLEPNDISAYVEITPHNLLSQIQHRILHLTPNGTTPLNYRENDRTLTFHS 399

Query: 364 ADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLELTRFG------INI 413
             +   E   +   L   L    D   K   ++ AD +        +          I  
Sbjct: 400 CHSLMREVEVLQDYLLHLLQQEPDLTPKDIIVMVADIDKYTPYIRAVFGQNVTLQTAIPF 459

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            IS        +  +   +LL           +  L+  P  +  F    L       + 
Sbjct: 460 SISDNKLSENNVIIAGFLTLLQLQESTFSAEDVLALLDVPAIRQRFN-IELQDLAQIRDW 518

Query: 474 VALRGNKNSYDIMDLKS-----LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
           V   G +      D                                   + +  L   + 
Sbjct: 519 VKNAGVRFGLAKNDEAESNYNSWQAGLERMLLGYALREENGIWQDSLGLDNSFGLKGQLA 578

Query: 529 QCI-TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
             +   L        +     S+  W +  +                L++      +  +
Sbjct: 579 GQLSAFLAALFDWFQTLQNRYSVEQWQQHLLALTDKFFAATAETDETLFY------IKEV 632

Query: 588 FSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             +  E  + +  +    +D++  +++    E        +  +     L  R + F  +
Sbjct: 633 IRQFAEQLAEVHFSDALGVDVVADVMNNALEENPNHYRFLAGRVNFCTLLPMRSIPFKVV 692

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
            L G+N+G +P+  A N F           +              + +   +L  +   R
Sbjct: 693 CLLGMNDGEYPRQQAPNSFDLMQYHRLKGDRARRDDDRYL-FLEALLSAQDYLYISYIGR 751

Query: 705 E--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY--------------- 747
              +N     S  + +LL     +        G   L W  +L                 
Sbjct: 752 SIADNQEREPSVLVSQLLDYIVENLPAENISVGN--LKWRERLVQQHGMTAFSRKNFEKN 809

Query: 748 --------TTKQPHYKRP----------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                     +                 +P            FS +   + +P   +  +
Sbjct: 810 DCTFMQSFAQQWLPLANSQVNQTLQDFIQPMMADAEPENEIEFSRLVAFVKNPVKFFFEK 869

Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITEL--IKKRINKNTPEINHLMKQIIDSHFEKEN 847
            L ++F    +   D  +      N + +       +  +  + +    ++     +   
Sbjct: 870 RLGVNFSEQEESIADSENF--ALDNALEKYAIHADLVEADEQQTDAFFARL---KVKGVL 924

Query: 848 LPPHIDIIWRHLFHKISHSF---LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                  I+ +        F   +            +       +  +   + L+G  
Sbjct: 925 PRGEFSAIYANQLLADVAEFKGKIADYVSQTPQSRFV----QFTVPTQEGDMTLSGNI 978


>gi|213585479|ref|ZP_03367305.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 1069

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 104/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   + +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLKALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|200387318|ref|ZP_03213930.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199604416|gb|EDZ02961.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 1123

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 106/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              T+         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHTFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSYYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|167550132|ref|ZP_02343889.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|197247868|ref|YP_002147904.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197211571|gb|ACH48968.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|205324810|gb|EDZ12649.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 1123

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 106/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              T+         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHTFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|300718154|ref|YP_003742957.1| exodeoxyribonuclease V gamma chain [Erwinia billingiae Eb661]
 gi|299063990|emb|CAX61110.1| Exodeoxyribonuclease V gamma chain [Erwinia billingiae Eb661]
          Length = 1122

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 101/943 (10%), Positives = 238/943 (25%), Gaps = 113/943 (11%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            + V +    Q L+    E  G  + I      L           +L         +   
Sbjct: 34  VVLVQSPGMAQWLQMSLAEQFGIAANIA---FPLPATFIWDMFVRVLPGIPKESAFNKAS 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
              +L  ++     +    + +      L+          LA  +AD+ D       +W 
Sbjct: 91  MSWKLMAILPAMLTRPEFTLLE----HYLTEDQDKRKLFQLASRVADLFDQYLVYRPEWL 146

Query: 168 DLHALK-NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
           +                    L  A   +T  L +             +R       +  
Sbjct: 147 NSWEKGQIIDGLGEAQQWQAPLWAALVEYTAELGQPEW-HRANLYARFIRKLESSNERPP 205

Query: 227 --KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI-------------- 270
                + I G +   P   + +  +  H +  ++      H    I              
Sbjct: 206 NLPDRVFICGISALPPVYLQALQALGRHIDIHLLFTNPCRHYWGDIQDYAFLAKLQSRHR 265

Query: 271 -----------WNTITEKSTNITSSNTTYSTHPQYSLAKL-------LDFLDIKREDVKR 312
                      +      +    +     S     S  KL       L  ++ +  D   
Sbjct: 266 QHFQRQSESPLFRQADASALFNDAGEQQLSNPLLASWGKLGRDNLFLLAQMECQEIDAFV 325

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
               +  +      + +          +N          +      ++L    + + E  
Sbjct: 326 DIEPTTLLQTVQRDLLELEDNAVIGLQQNEWETSTAKRRLDPADRSISLHLCHSPQREVE 385

Query: 373 SIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLST 423
            +   L   + ++     ++  ++ AD +        +         +   IS       
Sbjct: 386 VLQDRLLQMMADDPSLSPREVIVMVADIDAYTPFIQAVFGNAPAGRYLPFAISDRRASQA 445

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKN 481
                   SLL+          +  L+  P     F   E+ L R +  +E   +R   +
Sbjct: 446 HPALQAFISLLSLPDSRFTSEEVLALLDVPALANRFAIDEEGLKRLRRWVEESGIRWGLD 505

Query: 482 SYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
              + DL+       +                           + +  L+  +   +  L
Sbjct: 506 DDTVRDLELPPTGQHTWQFGLTRMLLGYAMNSESGHWQGVLPYDESSGLIAELAGNLAEL 565

Query: 535 VTYKTNKNSTC-GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
           +T   +  +       + +W  L  T LQ+    +      L   E  +      +  I+
Sbjct: 566 LTRLRHWRTLLNTTQPLEEWLPLCRTLLQDFFAGDADTEAALALIE--EQWQQAINYGIQ 623

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                        D +   +D E +  +      +     +  R + F  + L G+N+GV
Sbjct: 624 AQYQQAVPLSLLRDELASRLDQERISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGV 682

Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTI 711
           +P+      F     Q     ++             + +  + L  +   R   +N    
Sbjct: 683 YPRTLPPLGFDLMSQQPKKGDRSRRDDDRYL-FLEAINSAQQQLYISYIGRTIQDNSERF 741

Query: 712 ASRWLQRLLVL------------------------GGTDFFDNLKKRGQCYLDWTRKLDY 747
            S  +  L+                                  +    + +        +
Sbjct: 742 PSVLVSELVEYISQSFCLPEDQSLDVDKSAEAVIRHLHHLHSRMPFAAENFSPQAEFKSF 801

Query: 748 TTKQPHYKRPKPFPPLEAQPR-------TYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
             +          P                +F ++ +    P   +  + L + FI    
Sbjct: 802 AAEWLPAANASGVPHPAFMQPLPVLEIAELNFEQLVRFWRHPVRAFFSQRLGVSFIAEEA 861

Query: 801 KDPDRTDR---GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
             PD           + + T+L+   I++   E  +  ++             + ++ W 
Sbjct: 862 GLPDAEPFTLDNLSRYQVNTQLLNTLIDEQPSEPLYARQRAS----GNLPYGAYGELFWL 917

Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
               +++        + ++        +  ++A+   GI L G
Sbjct: 918 EQQEEMAE-LANRVREQRAGA------VSWEIALPIGGIQLNG 953


>gi|119385518|ref|YP_916574.1| UvrD-like DNA helicase domain-containing protein [Paracoccus
            denitrificans PD1222]
 gi|119375285|gb|ABL70878.1| UvrD-like DNA helicase, C-terminal domain [Paracoccus denitrificans
            PD1222]
          Length = 1124

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 97/968 (10%), Positives = 231/968 (23%), Gaps = 104/968 (10%)

Query: 18   FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
                +  L            P +   L +     P +     L   F       + ++P 
Sbjct: 179  LDAFLAGL-------RGFEAPADRDALWAACGLAPGEDMQSLLAECFAAGATVIAALVP- 230

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
               L     ++  A  L   N   P      +LE   L      +      D +P   L 
Sbjct: 231  -HLLKSGANDQKAAAKLAPGNWVQPGPAELAILESVLLTGASAKEPFTAKYDSFPTKALR 289

Query: 138  LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                      L  +LA +++ +E    +   L   +             F       +  
Sbjct: 290  NGPCA----ELLDDLAILMERVEAARPRRIALAHAERTL------ALNRFGHAFLNRYRA 339

Query: 198  RLVELNASSPVGYQIALMRAEAEH--------LMKGTKGPIIIAGSTGSIPATARLMSTV 249
            +                 R  +E+         + G    I++  +  + PA  +++  +
Sbjct: 340  QKAAHGRLDFDDLIDRTARLLSENSMAQWVLFRLDGGIDHILVDEAQDTSPAQWQVIERL 399

Query: 250  AN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT------------YS 289
             +              +    D       +            +                 
Sbjct: 400  TDEFTSGQGARDQTRSLFVVGDPKQSIYSFQGADIAVFEARRTGFAQAFDAVQEPMQVLE 459

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                +  +  +  L  +         + +    R+              +   +  E   
Sbjct: 460  LRHSFRSSTAILALVDQVFAGDAARGLGDPPQHRAFRTDMPGRVDLWPAIPKPEKPEPGD 519

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIAL----------RMSLDENKKKSALITADRNLA 399
                              R  A ++   L          R+          L+     L 
Sbjct: 520  WTDPVDLPAENSETVQLARAVARAVGEMLGQPIFDAKTGRLRRIRAGDVLILVQRRSELF 579

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
              +   L    + +  +  + L+  +    + +LL+ +    D +++A  ++ PL     
Sbjct: 580  AEIIAALKAANLPVAGADRLKLAGEMAVQDIRALLSVLATPEDDLSLAACLRSPLFDLSE 639

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
             E Y   A         R  + S+    ++ L      T     +    +  +    +  
Sbjct: 640  EELYRLAAGRKRGQYLWRRLRESHHRHAVEVLADLMGQTGFMRPYDLIQRLLIRHGGR-- 697

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
                 + ++  + P      ++  +      S  T      L  +  D+           
Sbjct: 698  -----ERLVARLGPEAQDGIDELLSQALSYESSETPSLTGFLVWLTGDDVEVRRQPGSAG 752

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
            +G+ L             +  +  + ++    ++     +    ++  L     L     
Sbjct: 753  DGEGLIR----------VMTVHGSKGLESPIVIMPDAAKRKPPREAPVLPGPDGLSLW-- 800

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
                                +       ++    ++T  +   +    +         + 
Sbjct: 801  ------------------RGRKGERPDPVEELAAMQTERQLQERKRLLYVGLTRAESWLI 842

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
              +  E      +   +    +         L       +      D+    P     + 
Sbjct: 843  VAAAGETGAGEDSWHAMVEAGMGRADLTETRLPAPWGGEIRRLSFGDWPETAPDAVLAER 902

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
              P E              +  P A  A    K+               GT  H ++  L
Sbjct: 903  PLPAEPDWLRAPPPPAPGKVR-PVAATALGGAKVIGAAGEGDAEAAMLFGTRLHLLLEHL 961

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
              +           ++        E     P+           +  +    +    S   
Sbjct: 962  PGRDPADWPELARDVLADA-----EGGLPGPNELAALLTEARAVIEAPDLAQVFALSDTA 1016

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQL 937
            ++   +     +  IG  +TG  DR+ +   G +   DYK+        +     I  Q+
Sbjct: 1017 EVLAEVALAAPVPGIG-TMTGAVDRLVVEP-GRILAVDYKSNREVPDTPDAVPLGILRQM 1074

Query: 938  SLEAAALK 945
            +   AAL+
Sbjct: 1075 AAYRAALR 1082


>gi|284043266|ref|YP_003393606.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
 gi|283947487|gb|ADB50231.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
          Length = 1184

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 106/917 (11%), Positives = 236/917 (25%), Gaps = 92/917 (10%)

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
            LP  +      +    A   +       V+   R +  ARL L    +L + +       
Sbjct: 179  LPQPRPAALEPKRVALAIARVQAEAEVAVARDGRSVFRARLALAECERLLERVAAASAGD 238

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKW--EDLHALKNEKYGMWWLLAADFLKIAS 192
            P   P SP     LA  L      +  E  +     L A  +       +     L    
Sbjct: 239  PGYAP-SPGEVARLA--LPRNGRALAGEGCEGYRTALQAYVDACADAHAVPVHGLLDALL 295

Query: 193  KYWTERLVE-------LNASSPVGYQIALMRAEAEHLMK--GTKGPIIIAGSTGSIPATA 243
            + +  R  E       ++          L+R   E   +       +++     + P   
Sbjct: 296  RGFGRRYAEAKQRASAVDFEDLELRANRLLREHEELRARYAERFVHVMVDEFQDTNPLQL 355

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             L+  +A    G  +    D       +     +                          
Sbjct: 356  ELLERIA----GERLFTVGDELQSIYGFRHADVELFRRRRKALAEHGAAASLATNFRSHA 411

Query: 304  DI----KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            +I          R G     +       + +              +     N       +
Sbjct: 412  EILETLNVAFAPRFGESFTPLVAGREERADALPVAGPRVELLVVDVRADWANAGLLPEGM 471

Query: 360  ALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISA 417
            A         EA ++A  +R  LD  ++     L+          +  LT   +   +  
Sbjct: 472  AAPAPLWRVAEARALAARVRELLDGGRRAGDVVLLLRATGDLAVYERALTDLAVPTYVIG 531

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G           L + L  +    D +A+ +L+  PL            A          
Sbjct: 532  GRGYWAQQQVRDLVAYLGVLANPRDGVALQSLLASPLVGLSSDGLVQVVAAARASRREGE 591

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ--SRLSEEDKELAVLLVDHILQCITPLV 535
                 + + + + L+                   +  +   +     L+D +L      V
Sbjct: 592  PPDPWWVLTEGRELLARLAPDDAERVEELRAWLPAERATAPRHSLESLLDRVLDQTGYDV 651

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                  +      ++    +L          D    +  +   E G  L S   +  E+ 
Sbjct: 652  ELLRLPSGARRLANVRKLMRLAREFEAEEGRDLRGFVDMVM--ELGGGLESSREQDRESE 709

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
            + ++  A++ + ++T         P +  +          S ++        G+      
Sbjct: 710  APVEGEALDAVRLMTIHRAKGLEFPVVCVADLGRGSPAAGSDVVRVGRDGRVGIKLKTLD 769

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP------ 709
             +  +     R +        +++      +   M      LI + ++     P      
Sbjct: 770  GSAPRPALAYRPIGEARARAESDEEARL--YYVAMTRAREQLILSGAVPTEPWPEPKLGA 827

Query: 710  ----TIASRWLQRLLVLGGTDFFD-------------NLKKRGQCYLDWT---------R 743
                 I   ++  +  L   D                ++ + G   L  +         R
Sbjct: 828  PAITWIGPAFVPEIARLAAPDGEPSGVVSNEGQAVAYSVVRPGAAALAPSLAGSEGDRGR 887

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRT-----------YSFSEIKQLINDPYAVYARRILK 792
             L +  ++    R         +P              S++ +       Y  Y  R+L+
Sbjct: 888  VLSHARERTPAGRRAHVRARATRPIGDGGGTAPPVATLSYTSLADHARCGYRFYLERVLR 947

Query: 793  LDFIPHFKK------DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            L  +    +          + RG + H ++ ++    +    P+   + +  + +  +  
Sbjct: 948  LPPVDDAPRGRGGRHGLAASTRGVIAHALLEQV--DFVRAQPPDAELVRRAAVRAGADPT 1005

Query: 847  NLPPHIDIIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
                            +   FL     +  +S   +        A++ +   L G  D I
Sbjct: 1006 -------AEELDEIRGLVVRFLASPLRERLASARDLRREQAFSFALDELP--LVGVFDAI 1056

Query: 906  DLLKSGFVDITDYKTGD 922
               +     I D+K+  
Sbjct: 1057 AR-EGNRTLIVDWKSDR 1072


>gi|194442490|ref|YP_002042244.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194401153|gb|ACF61375.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 1123

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 105/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|296534678|ref|ZP_06897076.1| double-strand break repair protein AddB [Roseomonas cervicalis ATCC
           49957]
 gi|296264995|gb|EFH11222.1| double-strand break repair protein AddB [Roseomonas cervicalis ATCC
           49957]
          Length = 366

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 137/347 (39%), Gaps = 10/347 (2%)

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
             +                   L  E     +  V+ +L  +   +   +    +     
Sbjct: 1   RALRGPRPAPGLEGLRARVAEALRREKDAPLLATVEKLLSALEAALQGFSELPDSPARPP 60

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDI 608
                             +      L+  EEG+ L+   S +      +   +   W  +
Sbjct: 61  AELLEAHLNAAEALAAARDRPGGLRLYAGEEGEPLAVFLSTLPPALRELPPMSPASWPAL 120

Query: 609 ITRLIDGETVK-------PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
              L++G            +  +   + ILG LE+RL +FD  +LG L EGVWP++T   
Sbjct: 121 FDVLLEGPAAPGVRIGRGREYAQHPRIAILGLLEARLQDFDLAVLGSLEEGVWPQSTDPG 180

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDF-EMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
           P++SR M+ D  L   E  IG+ A DF   A     ++  R+ +    PT+ SRWL RL 
Sbjct: 181 PWMSRPMRGDFGLPEPEARIGRVAADFMLAAASAPRVVLARARKRAGAPTVPSRWLTRLE 240

Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
              G         R +  LDW  +LD       + RP P PP E +PR  S +E+  L+ 
Sbjct: 241 TFLGGQAPGLGLPR-ERALDWASRLDMPEVVKPWPRPAPAPPPEDRPREISVTEVADLMA 299

Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
           DPY  YARR+L+L  +     +   +D G + H ++ +  ++  +  
Sbjct: 300 DPYGFYARRVLRLLPLEPLDAEVGASDYGQIVHQVMADWTRRLGDAP 346


>gi|85708952|ref|ZP_01040018.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
 gi|85690486|gb|EAQ30489.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
          Length = 771

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 104/778 (13%), Positives = 216/778 (27%), Gaps = 120/778 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+R       G  +  +P + +   +  +                 
Sbjct: 70  SQILCVTFTNKAAREMRERVAGHLGPGAEGIPWLGTFHSICAKM---------------- 113

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    L  +  L          W A+ LA +ID  +    
Sbjct: 114 -LRRHAELVGLEQNYTIIDTDDQLRLLKQ--LINDNGVDEKRWPARQLAGLIDRWKNRGL 170

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             EDL   + E Y       A+F     + + +RL  LNA       + ++    +H   
Sbjct: 171 NPEDLDPAECEAYVNG--RGAEF----YRLYQDRLKALNACDFGDLMLHMLNIFRKHTDV 224

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +       +  +A       V+   D       W      + 
Sbjct: 225 LADYQQRFKYILVDEYQDTNAVQYLWLRLLAQSHKNICVV--GDDDQSIYSWRGAEVANI 282

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      P   + +L          +     +      R                
Sbjct: 283 LRFEKDF-----PGAHVVRLEQNYRSTPHILGAASGLIRANSQR---------------- 321

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397
                 E  +         V +I   +  EEA  ++  +     E     + A++   + 
Sbjct: 322 -----HEKTLWTEVNGGDKVRVIGVWDAPEEARRVSEEIERLEREGAPLDQVAILVRAQY 376

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             R  +    + GIN  I  G             + L  I +  D +A   +   P    
Sbjct: 377 QTREFEDRFIQTGINYRIIGGFRFYERAEIRDALAYLRVIAQPQDDLAFERIYNQP---- 432

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                         L +  L+++        +P   + L   D 
Sbjct: 433 ---------------------------KRGLGAKTLEKMHQHARRVGMPLAAASLELADS 465

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +    L       I  L+            ++ SD  +L       +    +  +     
Sbjct: 466 DE---LPKRAANTIGSLMRSFLAWREASEQMTPSDLLRLV------LDESGYNDMLAADR 516

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
             E    +   S++       +    ++++ ++ ++D +    + ++  T+ I+    ++
Sbjct: 517 SAESAGRAENLSELARAMEEYE-TLGDFLEHVSLVMDND----RGDEEDTVTIMTIHAAK 571

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L FD +   G  EGV+P   A +         +  L + E+    A      A   R +
Sbjct: 572 GLEFDHVFCVGWEEGVFPSQRAID---------EGGLASLEEERRLAYVAITRA-RRRCM 621

Query: 698 IYTRSLRENNIPT---IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD--YTTKQP 752
           I   + R         I SR+++ L                    +W+   D      + 
Sbjct: 622 ILHAANRRIYGQWTSSIPSRFIEELPEEHIEQETTMTGGASLWRANWSENEDPFAHVARD 681

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
              R +   P   +     +   ++ + +P    A    K           +    GT
Sbjct: 682 RPDRAQARGPGWQRAVATGYEPRQKRVAEPGRSAASFAAKPRSDIAIGAMVEHKKFGT 739


>gi|153209587|ref|ZP_01947447.1| UvrD/REP helicase family protein [Coxiella burnetii 'MSU Goat Q177']
 gi|212218647|ref|YP_002305434.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuK_Q154]
 gi|120575306|gb|EAX31930.1| UvrD/REP helicase family protein [Coxiella burnetii 'MSU Goat Q177']
 gi|212012909|gb|ACJ20289.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuK_Q154]
          Length = 1110

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 92/806 (11%), Positives = 197/806 (24%), Gaps = 93/806 (11%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239
            L I +        E NA       +  +RA  +                 ++I     + 
Sbjct: 357  LPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQPSDYALQLDEQIQHLLIDEFQDTS 416

Query: 240  PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
                 L+  +       +G  +    D       +            +        Q + 
Sbjct: 417  IIQFHLIEKLITGWQPKDGRTLFLVGDPMQSIYRFRQAEVGLFLQVKNEGLGE--IQLTP 474

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              L +    ++  +             +     +F   + S + +     +   N     
Sbjct: 475  LILRNNFRSQKNLIDWF----------NQTFEPTFPKEENSHLGSISYSHSFATNNSINQ 524

Query: 357  SDVALIEA--DNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINI 413
             ++        N   EA  I   ++    +  +K  A++   R+    +   L    I  
Sbjct: 525  KNINFYSLLNANALNEATQIVKIIQGCRSENPEKTIAILVRSRSQLIEITPALRSADIPF 584

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
                   L+  +    L SL  A+  L D +A   L++ P       + +          
Sbjct: 585  HAVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSR------ 638

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
             A             +  VL      + N       +     D+ L    ++ I   +  
Sbjct: 639  YANDKPIWVALQNASEIAVLTSDGKNRINRIFSILSAAFDNRDRLLLAQWIEGIWTALGG 698

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
                 +N        +     +              +KL  L+ + +    + +    I 
Sbjct: 699  PACL-SNSTELMNTQAYFQLLETLEN--DFTSERLTQKLNQLYAQIDTDAKNPIQIMTIH 755

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                ++ +          ++ G   +P+ +    L  L        N   LIL  L    
Sbjct: 756  KAKGLEFD--------HVILPGLEKRPRSDDHDLLLWLERHTKAGNN--ELILAPLKAAS 805

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
               +   N       +   N              +  A   +                 S
Sbjct: 806  EKADPVYNYLKRIEKEKTTN--------EITRLLYVAATRAKE----------------S 841

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
              L   L          L  +G        ++ +   Q  +++           +     
Sbjct: 842  FHLLTSLNKEDPQSPIKLPPKGS-----FAEILWPVCQEAFEQSIIIFDDTLPSQKGGLK 896

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD--RGTLFHNIITELIKKRINKNTPEI 831
             +++L +D    +  + L              +    G + H  +  +  + +     E 
Sbjct: 897  LLRRLTSDWAPPFILKTLPSAESKPLTPFTPASSKRLGIVIHETLERIANEGLESWDKER 956

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI--FVNIPAKM 889
                K        +    P     + +         L   +       +       P  +
Sbjct: 957  IENNKSFWQRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQKSEYPITL 1016

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDPQLSLEAA 942
             +E   I      D   + ++G   I DYK+            +         QL   A 
Sbjct: 1017 -VEDKKIK-HFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEA-QLQQYA- 1072

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQK 968
                 +F  +D R +    Y  L Q 
Sbjct: 1073 ----NAFHALDSRPIKLGLYFPLCQG 1094


>gi|157148366|ref|YP_001455685.1| exonuclease V subunit gamma [Citrobacter koseri ATCC BAA-895]
 gi|157085571|gb|ABV15249.1| hypothetical protein CKO_04188 [Citrobacter koseri ATCC BAA-895]
          Length = 1122

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 123/1075 (11%), Positives = 270/1075 (25%), Gaps = 143/1075 (13%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +  +   DP  P       + V +    Q L+    +  G  + I     
Sbjct: 11   DVLEALMEFIVERDRLDDPFEPE-----LVLVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         S      +L  L+     +    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPDIPKESAFSKQNMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                    L+   AD+ D        W                 +    L  A   +T  
Sbjct: 119  ADKRKLFQLSSRAADLFDQYLVYRPDWLTQWEAGQMVDGLGEAQIWQAPLWKALVEYTAE 178

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            L +             ++         T     + I G +   P   R +  +  H    
Sbjct: 179  LGQPCW-HRANVYQRFIQTLENATTSPTGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257  IVLPGLDCHIPTAIW-------------------NTITEKSTNITSSNTTYSTHPQYSLA 297
            ++      +    I                      +     N  +     S   Q    
Sbjct: 238  LLFTNPCRYYWGDIRDPAWLAKLVARQRRHSFEERDLPLFRDNQRAGELFNSDGEQDVGN 297

Query: 298  KLLDFLDIKREDVKRLGN---------------VSNEMYGRSMVISKSFLPPDTSDMRNT 342
             +L        D   L +                 N ++     I +             
Sbjct: 298  PMLASWGKLGRDYIYLLSELENTQELDAFVDIPPDNLLHNIQADILELESRAVAGVNLEE 357

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                +    +    + V      + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358  YARSDNKRLLDPNDASVTFHVCHSPQREVEILHDRLLAMLEADPTLMPRDIIVMVADIDS 417

Query: 399  ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                   +         +   IS      +        SLL+          +  L+  P
Sbjct: 418  YSPFIQAVFGSAPAERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            +    F           L +    G +   D  +++ L L           +       +
Sbjct: 478  VLAARFNINEEGLRYLRLWVNES-GIRWGIDDDNVRELALPATGQHTWQFGLTRMLLGYA 536

Query: 514  EEDK-----------ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
             E             E + L+ + +    + L+     +        + +W  +    L 
Sbjct: 537  MESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNLWRRGLAQARPLEEWLPVCRDMLN 596

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
            +  L +             +   ++ ++ +E             D + + +D E +  + 
Sbjct: 597  DFFLPDAETEAA--MTLIEQQWQAIITEGLEAEYGDAVPLSLLRDELAQRLDQERISQRF 654

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                 + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++       
Sbjct: 655  LAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRD 710

Query: 683  QAAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGTDFFDNL 731
               + F  A     + L  +   R   +N     S  +Q L+        L G +   + 
Sbjct: 711  DDRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELMDYIGQSHYLPGDEELTSD 770

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN--DPYAVYARR 789
            +   +      R             P        +    +    +   +   P       
Sbjct: 771  ESEARVKAHIARLHTRMPFDAQNYLPGEQQSYAREWLPAASQSGEAHSDFVQPLPYELPE 830

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             L L+ +  F   P R                +  +     +  L +  ++       + 
Sbjct: 831  TLTLEKLQRFWAHPVRAFFQMRLQVNFRAEESEIPDTEPFILEGLTRYQLNQQLLNTLVE 890

Query: 850  PHIDIIWRHLFHKISH----SF--LEHEEKIQS----SIEKIFVNIPA---KMAIESIGI 896
                 +    F         +F  +  + + Q     +   I    P    ++ +   G+
Sbjct: 891  EEDAGLLFRRFRAAGDLPYGAFGEILWDTQRQEMQSLADRIIACRQPGKSMEVDLLCNGV 950

Query: 897  HLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
             +TG           + G              P   +  +    QL LE           
Sbjct: 951  QITGWLPQV-----QEDGLLRWR---------PSLISVAQG--MQLWLE----------- 983

Query: 952  IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL-SEKSLKNLIEIVTLLQNGE 1005
                   +L Y     K +       + ++    L +E++L  L +++   + G 
Sbjct: 984  -------HLVYCACGGKGESRLFLRKEGEWRFPPLEAEQALTYLAQLIDGYREGM 1031


>gi|322417958|ref|YP_004197181.1| exodeoxyribonuclease V subunit gamma [Geobacter sp. M18]
 gi|320124345|gb|ADW11905.1| exodeoxyribonuclease V, gamma subunit [Geobacter sp. M18]
          Length = 1082

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 90/827 (10%), Positives = 197/827 (23%), Gaps = 80/827 (9%)

Query: 21  MIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS 80
           ++  L++                     I V +K   + L  E     G  +        
Sbjct: 10  LMEHLVDRLEQVVRAPRSAPGTPFDKELIVVQSKGMQRWLSMELAGRIGVWANG--EFLF 67

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
               VEE F   L  S    P  +       +  L+    +K             LS   
Sbjct: 68  PNRFVEEVFARVLPDSPAEAPLFAPEVMTWRILGLLQQVTSKPGFEEIA----GYLSDDA 123

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                + LA+ +AD  D         E L   +       W           + W     
Sbjct: 124 DGLKRMQLAQRIADTFDRYTIYR--PEKLLQWEEGAE-EHWQA---------QLWRALSD 171

Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
            +             +A  E      +  I + G     P    +++ +A +    + L 
Sbjct: 172 GVTQKHRARLLHDFRKAL-ESGRLPEQRRISVIGIPSLPPFHLEVLARIAQYGEVNLFLL 230

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
                    I +    +   +           +     L  +  + R+  + + +   E 
Sbjct: 231 NPCRQYWGEIVS--ERELARLEKRGEGAEQWYETGNPLLASWGKLGRDFFEAIIDGCGEH 288

Query: 321 YGRSMVISKSF---LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
             R           L    +D+      E  +  +      + +    +   E   +   
Sbjct: 289 ERRDSFPELPQGSLLHEVQADIVELRGAEAGLRTVSAHDLSLKVHSCHSPMREVEVLYDT 348

Query: 378 LRMSLDEN----KKKSALITADRNLARRVKLEL----TRFGINIDIS-AGIPLSTTLHSS 428
           L    D +     +   ++T D          +       G  I  S A   L     ++
Sbjct: 349 LLSIFDADPSLSPRDVLVMTPDIEAYAPYISAVFQNPEEGGERIPYSIADRSLKNEGEAA 408

Query: 429 -ILTSLLNAIFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAKNALELVALRGNKNSY 483
             L ++L           +  +++ P           +    R       +    +    
Sbjct: 409 QALLAILGLCGGRYGVATVLDILESPPVARRFNLSEDDLETVRDWLRGANIRWGIDAEQR 468

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH-------ILQCITPLVT 536
               +     +  A   +   + +  +          +   D          + +     
Sbjct: 469 TEHGVPPFRENSWAAGLDRLLLGYAMNGDGRSFYNGILPFDDMEGGVALVFGRFLAFCER 528

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                 +       S+W       L +  L +      L    E                
Sbjct: 529 LFGETRALARPRVPSEWVPALRQILDDFILPDQEGERELLSLIEIAKKLGECGNQAGFEG 588

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
            +    + +   + + + G + +     +  +     L  R + F  + L G++EG +P+
Sbjct: 589 QVGIEVVRY--WLEQQL-GSSERGLGFLTGGVTFCAMLPMRSIPFPVVALIGMDEGQFPR 645

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASR 714
                 F     +     ++             + +  + L  +   +   +N     S 
Sbjct: 646 RNPAQGFDLMTAERRAGDRSPRDEDRYL-FLEALLSTRKRLHISYVGQSIKDNKELPPSV 704

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLD---------------------------WTRKLDY 747
            +  LL      F  +        L                               K+  
Sbjct: 705 LVSELLDYLERCFVTSNGTPAGAVLHHPLQPFSQKYFTGNPALFSYSRRNCAGAAAKMSP 764

Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
            +  P +      P  E    T     +   + +P     RR L + 
Sbjct: 765 PSTPPPFLEAPLSPWEEESTVTLKA--LIDFLCNPAKELLRRRLGIR 809


>gi|170755767|ref|YP_001780080.1| ATP-dependent nuclease subunit B [Clostridium botulinum B1 str. Okra]
 gi|251764549|sp|B1IEL7|ADDB_CLOBK RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|169120979|gb|ACA44815.1| ATP-dependent nuclease subunit B [Clostridium botulinum B1 str. Okra]
          Length = 1150

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S +++    P+A + +  LK      F       D G   H+I+ +   +   K  
Sbjct: 774  KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKKGL 831

Query: 829  PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875
                         + ++I+   + ++L          +      KI     +L  E   +
Sbjct: 832  EWGTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891

Query: 876  SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTG- 921
             + +  +  +   +  +             I+L G  DR+DLL K G     I DYK+G 
Sbjct: 892  GNFKPSYYELSFDIDGDYPPIAMELHSGEVINLIGRVDRVDLLQKDGATYLKIIDYKSGI 951

Query: 922  DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               K       +  QL +   A L   +       +   L Y++L      D I  +   
Sbjct: 952  KEFKLSDVYYGLQLQLLIYLDAILTELAERSGINGEPGALLYLKLD-----DPIVKNTVD 1006

Query: 981  YSADELSEKSLKNLI 995
             S +E+ +  +KNL 
Sbjct: 1007 MSDEEIEKSIIKNLK 1021


>gi|153940479|ref|YP_001389797.1| ATP-dependent nuclease subunit B [Clostridium botulinum F str.
            Langeland]
 gi|251764550|sp|A7GAI7|ADDB_CLOBL RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|152936375|gb|ABS41873.1| ATP-dependent nuclease subunit B [Clostridium botulinum F str.
            Langeland]
 gi|295317884|gb|ADF98261.1| ATP-dependent nuclease subunit B [Clostridium botulinum F str.
            230613]
          Length = 1150

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S +++    P+A + +  LK      F       D G   H+I+ +   +   K  
Sbjct: 774  KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKKGL 831

Query: 829  PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875
                         + ++I+   + ++L          +      KI     +L  E   +
Sbjct: 832  EWDTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891

Query: 876  SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTG- 921
             + +  +  +   +  +             I+L G  DR+DLL K G     I DYK+G 
Sbjct: 892  GNFKPSYYELSFDIDGDYPPIAMELHSGEVINLIGRVDRVDLLQKDGATYLKIIDYKSGI 951

Query: 922  DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               K       +  QL +   A L   +       +   L Y++L      D I  +   
Sbjct: 952  KEFKLSDVYYGLQLQLLIYLDAILTELAERSGINGEPGALLYLKLD-----DPIVKNTVD 1006

Query: 981  YSADELSEKSLKNLI 995
             S +E+ +  +KNL 
Sbjct: 1007 MSDEEIEKSIIKNLK 1021


>gi|88808888|ref|ZP_01124397.1| possible exodeoxyribonuclease V gamma chain [Synechococcus sp. WH
           7805]
 gi|88786830|gb|EAR17988.1| possible exodeoxyribonuclease V gamma chain [Synechococcus sp. WH
           7805]
          Length = 1105

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 77/868 (8%), Positives = 216/868 (24%), Gaps = 48/868 (5%)

Query: 40  NPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNL 99
            P     V + V T    + L      I G  + +       G  + +   A L     +
Sbjct: 25  PPNPFEQVEVVVNTWPTSRWLGERLASINGISALV--RFPFPGSRLRQLVQAVLSTEPPI 82

Query: 100 NPPVSNIQRLLE-LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           + P    + +   LA L  + + K  + ++  +     +          LA+ LAD +D 
Sbjct: 83  DDPWRAERLVWTVLAVLPQLMQRKEAEPLRQWWNSHRTASETLTREQWLLARQLADAVDD 142

Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
                   ++L        G        +  +  +   +RL        V   +  +R  
Sbjct: 143 YALYR--PQELANWLAGDDGGNLPGVLRWQPLLVRALADRLPSDPFGLQVQRAVDHLR-L 199

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
            +         + + G +   P    L+  +A      + L      +            
Sbjct: 200 GQAPATTLPRRLRLFGLSNLAPVQIDLLQALAGVMQVELYLLTPCPDLWERSARRRRRLG 259

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR--------LGNVSNEMYGRSMVISKS 330
            N T+S           L  +L  +  + + +            + ++       + +  
Sbjct: 260 ENWTASPDGTWLIEAPKLEAILGRMGGEFQLLLEGSGDCLLSSTDQADLFADPVAMAASE 319

Query: 331 FLPPDTSDMRNTDILENKIPNIQ--KCFSDVALIEADNEREEAISIAIALRMSLDE---- 384
                  +     +   +  ++Q  +    +  +       E   +   +   + +    
Sbjct: 320 GRQASLLEQLQRQLASPEHASLQLKRSDQSLLFMGCAGPWREVQLVRDRILRWMADDPTL 379

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL------HSSILTSLLNAIF 438
             +   ++T D      +   +        +     L+               +LL    
Sbjct: 380 QPRDILVMTPDVERYAPLLASVLSDQDATGVDLPWRLTDRSQQNSPGLQQAFMTLLQLSA 439

Query: 439 KLNDFMAIATLVKHP-------LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
           +      +  L+ +P       L      +   +  ++       R  ++  D   L+  
Sbjct: 440 ERLTATGLEALMSNPAFLSLQGLVAQEAMDITAALQRSGFRWGLDREERHGDDTHSLRWC 499

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
           +   +                +    +L++  ++     +  +  +      +      S
Sbjct: 500 LDRWLIGLILPDEPGLALGTCAPALPDLSLQQLERWWPLLDQVARWIAQLRQSGSC---S 556

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            W +     L ++  D        W  +  +     +         +       I ++  
Sbjct: 557 AWVERLRRLLSDLFGDGGAWD---WELQAIQQCLDCWVLQAGHC-ELNLETTVVISVLEE 612

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            +  ++ +    +S  + +      R +    ++L GL+   +P+   +  F     Q  
Sbjct: 613 ALSADSGRFGH-RSGAMTVSALEPMRAIPHRVIVLMGLDAASFPRTRERPGFHLLERQRR 671

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
           L   ++            + +  +HL+ + S R+                L       + 
Sbjct: 672 LGDPSSTDQDRYV-LLEALLSSRQHLLISWSSRDERRGDTLPPCPPVQQWLSLLRQELSE 730

Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
           +   Q  ++              K                  + ++    P        L
Sbjct: 731 EAMAQVLIEPPANPLDAANFIPAKTDALSCDRRLLQARQCLDDPQRPA--PGHAPLGLAL 788

Query: 792 KLDF-IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKEN 847
            + + +             +     +   ++        +           ++       
Sbjct: 789 PIHWTLEAKPAAAQANTLNSDQVEQLERWLQAPQRAWLRQRGIEAGEWCDAVEDRSPLAL 848

Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
               +  +     H          E   
Sbjct: 849 PERALRALMTERLHDELDGLTRDPEARW 876


>gi|257784674|ref|YP_003179891.1| hypothetical protein Apar_0871 [Atopobium parvulum DSM 20469]
 gi|257473181|gb|ACV51300.1| hypothetical protein Apar_0871 [Atopobium parvulum DSM 20469]
          Length = 1042

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 117/1004 (11%), Positives = 266/1004 (26%), Gaps = 137/1004 (13%)

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL---ILIWRNKLPDIIKDLYPESPLS 137
           L + V+E+  A L    +    V +   +L + R    I      +     D +      
Sbjct: 14  LSNSVQEQLRASLERWGSAWLIVPSPDAVLLVKRQLGSIQELSVGVNVSTFDEWMRDQWK 73

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
           L  S      L+  L  +      +    ++L  L N K  +   L +           +
Sbjct: 74  LYGSSDRL--LSTTLRKVFFQQILDGMSADELGTLNNSKGTVE--LLSKLAPEYLTELDQ 129

Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
            +     S+       ++      L + +   +              L+ ++       I
Sbjct: 130 IMASGQLSAGQMSACKVLERYKALLEEKSYVEV--------CQCLDYLLQSIPAQGPALI 181

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
                D       +     +  ++T S         Y+  + L+ +     D +   +  
Sbjct: 182 FSRVEDLSEARLKFVRKLAQKRDVTFSLYVPEGPAGYAAEQQLELVGGPGCDCRV--DAE 239

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
                +S  ++                   K  N       V  +    +  EA SI+  
Sbjct: 240 PAPAAKSQELNDLLASVF----------RAKEGNKITPSGAVTFLSPLGQHAEAESISRY 289

Query: 378 LRMSLDENKKKSALITADR-NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           +   ++   K   + T++   +   +  +L   GI +     + +  +L      SL++A
Sbjct: 290 ISQCVESGSKSFVVYTSNPQRVWDALSQKLAAKGIAVHYRRSVRIQDSLAGRAFASLIDA 349

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
              L++   +   + +  +     +                 +     I  +       +
Sbjct: 350 YVTLSERAELEKNIDYQASDHQMGDMSW-------WPPHTLTDYLISPISGISVERAWML 402

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                           +    E           C   + + +  +  +     I   +  
Sbjct: 403 DKSWRGNRTL-----YATRVLETLSKAAMSSRLCAETIKSLELGRIGSAAQRIIEHLSAE 457

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                  V   +   L +L  +E  K +S + S   E          + +     L   +
Sbjct: 458 ISDEQSEVAQSKELTLQSLQNQESLKVMSKIVSSAQELHEAGLKLTPQTLKSFMDLCKDQ 517

Query: 617 TVKPKIEKS--STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
            V   +     S + +L    S+  +FD +I  G+ + +     A +  L   ++     
Sbjct: 518 AVMMPVSNGIKSDIQVLIAPVSQAHSFDAVIFQGM-DTLNFGVKASDGALQEFVRHASKT 576

Query: 675 KTAEKYIGQAAHDFEMANGTRH---------------LIYT----RSLRENNIPTIASRW 715
               ++       +                       +  +       ++    T   R 
Sbjct: 577 PKVSEFARYQRDFYTALATASTSVAFEKVEQKDVFNAVALSEVKACYPKDYAKKTGLVRG 636

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY----- 770
            + +LV       D  +      ++               R      LE + +       
Sbjct: 637 EEEVLVNLLPQASDLKRVAELPTIESGEIDSKLKNIVVLPRHLTRETLEQELQGLIEVSR 696

Query: 771 ------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
                 S S+I+  +  PY  + +R +K+  +     +      GT  H ++       +
Sbjct: 697 EGLPLLSASQIETYLECPYKWFTQRRIKISQVDT---EFAPMQMGTFIHRVLELTHATLL 753

Query: 825 NKNTPEINHLMKQIIDSHF----------------EKENLPPHIDIIW------------ 856
            +        +   ++S                   K+ L      +W            
Sbjct: 754 AEALGCDVTEVDTAVESVLLQDVAGSRITTDNLDHAKQVLDSCFAQVWDEQFNNINRASS 813

Query: 857 --------RHL-----FHKISHSFLEHEEKIQSSIEKIFVNIPAKMA---IESIGIHLTG 900
                   +         +     LE E       +  F  +        +E  G   TG
Sbjct: 814 NELIPHSIQERKQVENIRENLKDLLEFEASHFIGYQPRFFELRFGREENVVEYAGAQFTG 873

Query: 901 FADRIDLLKSGFVDITDYK----------TGDNPKKETAQK---LIDPQLSLEAAALKAG 947
             DR+D+   G   I DYK          +          K       Q ++ A  ++  
Sbjct: 874 SIDRVDVNAHGQALIIDYKHKGTKDLKAYSAKLSLDSEVSKEVLPRHVQSAIYAQIMR-- 931

Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
              Q+   ++ ++  I L  K + D  +      + +  +E   
Sbjct: 932 --KQLTKYELESVAAIYLGTKEQKDKPSFALAGMATEAATEHIW 973


>gi|85714148|ref|ZP_01045137.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A]
 gi|85699274|gb|EAQ37142.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A]
          Length = 1176

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 83/769 (10%), Positives = 178/769 (23%), Gaps = 59/769 (7%)

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST---GSIPATARLMSTVANHPNGAIV 258
                      + +  A+     +      IIA  T   G+     R +  V +       
Sbjct: 404  HYKLDRGVDHVLIDEAQDTSPKQWDIVERIIADFTTGEGAREGVKRTVFAVGDEKQSIFS 463

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
              G            +  K  +             +   K +            +    +
Sbjct: 464  FQGAAPREFDERRRKLERKFADAKLPFCKEDFIYSFRSGKTILESVDHVFRDPEIYASIH 523

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
             +    +  S +   P   D+ + +  E              +     E + A  I   +
Sbjct: 524  AVGAHPVHESLADAAPGIVDLWSLEEREKHEEIEGWPAPFDNVTATSPEVKLARRIRNEI 583

Query: 379  RMSLDE--------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            +  + +                    L+    N    V   L + GI +  +  + L+  
Sbjct: 584  KALIAQGVMTGHLGNRRPLGYGDILVLVRRRGNAFDAVIQALKQSGIPVAGADRLKLTEH 643

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
            +    L SL +A+    D +A+A  +K PL      + +    +    L           
Sbjct: 644  VAIIDLMSLADALLLPRDDLALAVALKSPLFGLDDDDLFKLAWQRKGSLR---------- 693

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                 +L        K        +   S   +E        +L         +      
Sbjct: 694  ----DALAGHAPTDDKFRDAFERLKRCESRAARETPFAFFAWLLGGQGGSEGGRRRILRR 749

Query: 545  CGNLSISDWTKLTVTCLQNVC-LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
             G+ +     +     L          +    W       +             +  +  
Sbjct: 750  LGHEANDALDEFLELALTYERKAPASLQGFMAWLRAADTEVKRDMEITRNEVRVMTVHGA 809

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
            + ++     +   +  P   +  +L  +    +        I  G      P        
Sbjct: 810  KGLEASVVFLADTSTSPADTERLSLIRMARGNAPAGGGGVTIWAGSKVEDPPCVA----- 864

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
                        TAE         +         +     +  N   I       L+  G
Sbjct: 865  ------LARASMTAETEHEYRRLLYVAMTRAADRLIVGGCKPANRKDIREFSWYHLIEKG 918

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
              +    +++         R             P                 +        
Sbjct: 919  LGNSGLAMQEIETSNGKVKRFTRPGEAASDAAGPAGPAAAAGITLPSWLHRMAAPEAPAT 978

Query: 784  AVYA----RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                        +        +      RGTL H ++  L +    +        + +  
Sbjct: 979  RSLQPSDTDEAARSPAGEPADQHRRARLRGTLAHRLLQSLPEAPRERRRDAALSYLARNA 1038

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI-ESIGIHL 898
            +     E       ++      + +  F E          +  V I  ++       + +
Sbjct: 1039 NDWSAAERDALVTRVMAVLDDARFAPVFAE--------GSRAEVAIAGRLTTRRGDTLLV 1090

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALK 945
            +G  DR+ +     V + DYKT   P +      +    QL+L  A L 
Sbjct: 1091 SGQIDRLVVTPD-EVLVVDYKTSRAPPRNLADVPQAHIRQLALYRAILA 1138


>gi|303252733|ref|ZP_07338894.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248957|ref|ZP_07530967.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302648383|gb|EFL78578.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854568|gb|EFM86761.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 1114

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 85/780 (10%), Positives = 197/780 (25%), Gaps = 88/780 (11%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             L+   + +  NP    S T+ V +    Q L+ +  + TG  +               
Sbjct: 14  AALLIRLQQNDPNPNPFESETVLVQSVGMAQWLQMQIADQTGVAAH----------YQFP 63

Query: 88  KFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPESPLSLPI 140
             T+ L   Y +  P    + + E       L RLI  +  K     + L          
Sbjct: 64  FPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYLNKDARQ 121

Query: 141 SPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMWWLLAAD 186
            P     LA  +AD+ D        W              E L A+   +          
Sbjct: 122 YPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE--RDILA 179

Query: 187 FLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKGPIIIAG 234
            L+  S  W   + ++ A S                    +    E         I + G
Sbjct: 180 NLRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPKRIFVFG 239

Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNITSSNTT 287
            +        ++  ++ H    +                       +  + +        
Sbjct: 240 ISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQDLDALL 299

Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                Q     L  +    RE + +L     +         +             +    
Sbjct: 300 AEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAILNFNNE 355

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
           +   + +    + +    +   E   +   L    + N     K   +++AD +      
Sbjct: 356 QRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADIDKYAPYI 415

Query: 404 LEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH---- 452
             +        +  I   +S     +     +    LLN         ++  L+      
Sbjct: 416 NAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLLDVKALR 475

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
                   +    R       +    +    D  +  +            +         
Sbjct: 476 ERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKAESGIWQ 535

Query: 513 SEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                  +  L   ++  +   +            + ++ +W       +          
Sbjct: 536 DSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI------GEFY 589

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE---KSSTL 628
             +    +    L+S   ++       + +    I+II  L++ +  + +      +  +
Sbjct: 590 QESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQFLAGKV 649

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
                L  R + F  + L G+NE  +P+  + N F   +MQ         +         
Sbjct: 650 NFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDDDRYLFL 707

Query: 689 EMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
           E     + +   +   +   +N   + S  + +LL        +  + +      ++  L
Sbjct: 708 EALLSAQEIFYLSYIGQSTTDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKDSFSEAL 767


>gi|168261854|ref|ZP_02683827.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205349143|gb|EDZ35774.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 1123

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 105/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLERATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|168820279|ref|ZP_02832279.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205342937|gb|EDZ29701.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087421|emb|CBY97186.1| exodeoxyribonuclease V gamma chain [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 1123

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 106/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATTCPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              T+         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLLARQRRHTFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|298710700|emb|CBJ32124.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1074

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 107/942 (11%), Positives = 229/942 (24%), Gaps = 140/942 (14%)

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-----GTKGPIIIAGSTGSIPATARL 245
              + + +              +   R   E              + +       PA   +
Sbjct: 161  VYEAFVDLKRREGVEDFSDQLLLARRILRESATAKAALSLRLSHVYVDDIQWYSPAMIDI 220

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ--YSLAKLLDFL 303
            ++++     GA +    D H+       I        +         Q  +         
Sbjct: 221  LASL--VAPGARITATADPHLAAMSRVGIFRAEHTAIARFKKAFPGAQELHLEGNHHSSS 278

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE----------------- 346
             I+          +     R      +            D                    
Sbjct: 279  AIQMAMKTLEPRDAPAAAKRKNSAKAAKADAPGVADFLEDTAGVERNTSAAAAAATDEKP 338

Query: 347  --NKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLDENKKKSALITADRNLARR 401
                 P      S +  +    E +E  ++   +R    +                +A  
Sbjct: 339  ALATTPGAASRDSRLTCLTFQTEGDEVKALGRRVREVIKAGVHPGDIGVAAVGGGGVADT 398

Query: 402  VKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            +   L+  G+ ++       +       +L S L  +   ++   +  L+          
Sbjct: 399  LVAALSAAGVPVESPPRFSAVFDNETPRMLMSFLRCLVHPSESTPLLHLLMS----CPAY 454

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                     ALE    R        + L+S + D  + +  ++H       +S   + +A
Sbjct: 455  ALPGGELTAALEGHLSR-------YVPLRSFLRDIHSGEGGDSHPRGGGHGVSTSARNVA 507

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
              L+  +             +      L  S   +           +E R +   +    
Sbjct: 508  GKLLSDV-DRFAETAKRTGVREIMLDFLRYSGRLERLEEPTTKEEEEEGRAVAEFFELTA 566

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDII--------TRLIDGETVKPKIEKSSTLFILG 632
                 +    +      ++         +             GE        S  + +  
Sbjct: 567  RAEQQAGGDNVALVEPILRLFRRHGTGYMKPSGPRDDEAATGGEFGGSSAGSSGVVRVFR 626

Query: 633  TLESRL----LNFDTLILGGLNEGVWPKNTA------KNPFLSRVMQSDLNLKTAEKYIG 682
              E        ++ T+ +   +    P N          PF       D     AE  + 
Sbjct: 627  LGEDWNAGENRSYHTVFIPFCSRARLPGNLRTPRLTVPGPFRGYPEPRDTGSLRAEADLA 686

Query: 683  QAAH------DFEMANGT--RHLIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLK 732
            +A H          A G+  + +  + S R          S +L  +L       +    
Sbjct: 687  RAYHENRGRAMLYAALGSAGQEVCLSVSARAIRGKTHLSPSPFLAEILGDDAPREWITAI 746

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFP-------------------PLEAQPRTYSFS 773
            +  +   D    ++              P                      A     SFS
Sbjct: 747  ETPKDQEDRLHLVEDEGAAAPGGSRDAAPKVVEGGYATVAGRLESASPSPAAAALRLSFS 806

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK--------KRIN 825
             I      PY+ + + +L +   P+ +        G   H  +  L++            
Sbjct: 807  SISSFAACPYSYFLQHVLNVSPPPNPR-----MVYGQAMHEGVAALLRGVASGSRGAGPP 861

Query: 826  KNTPEINHLMKQIIDS-HFEKENLPPHIDIIWRHLFHKISHSFLEHE-------EKIQSS 877
                 +     Q +    FE  +    +               +E             S 
Sbjct: 862  PTLEAVVEDFNQHLRGCAFESVDQLRTLRAAGVAGLESFMSRLIEDRGCTTGAGSGHNSQ 921

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS--------GFVDITDYKT--GDNPKKE 927
              ++ V     + I    + L+G  DR+D+  +        G + ITDYK+  G      
Sbjct: 922  PRQLLVERKFMVKIPEASVVLSGIFDRVDIEAAVGEGSSHPGLLSITDYKSNVGAKVPSR 981

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
              +   + QL + A A +          ++A                  D ++  A  L+
Sbjct: 982  MVRD--NLQLRIYALAAER--LFGTPPTEIA-------------IESIEDGRRGVAVPLA 1024

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
              +   L E ++      +        S ++     + H+ R
Sbjct: 1025 ADAKVAL-EAISATATAVRAERFEATPSFQACTFCSFKHMCR 1065


>gi|313123656|ref|YP_004033915.1| ATP-dependent helicase/deoxyribonuclease subunit b [Lactobacillus
            delbrueckii subsp. bulgaricus ND02]
 gi|312280219|gb|ADQ60938.1| ATP-dependent helicase/deoxyribonuclease subunit B [Lactobacillus
            delbrueckii subsp. bulgaricus ND02]
          Length = 1179

 Score =  109 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 105/994 (10%), Positives = 244/994 (24%), Gaps = 166/994 (16%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY-PESPLSLPIS 141
                  +         +   + +    + L ++I   R++L               +  +
Sbjct: 71   SFSRLAWFFFKKADLLMPESLDDAAATMILEQIIDKRRDELLLFKNSHANSGMIKQVYST 130

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                     +L ++++              L NE            L +  + + E + E
Sbjct: 131  ILQVHTGQLDLGNLLERAA----DPAVALDLDNET-----RDKLHDLDLIYQDFLEIVSE 181

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             + ++     I L +  A      ++    +   +         M  +A   +       
Sbjct: 182  KHFATKDELNIQLNQLLASRPDLVSQASFYVTDFSHFSIQEKMTMQLLAAFASEMTF--- 238

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEM 320
                             T   S     +    Y + K +  L                  
Sbjct: 239  --------------AFKTADGSVIEPAAGEYDYVVQKTIKDLTGYFSAHDFAW------- 277

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
              R  + S      D +         +          ++ L++AD+   EA  +A  +  
Sbjct: 278  -EREKIASPVSPARDLNQAWQGQGQPD--------LDNLQLVKADSRYAEAYFVARTIYD 328

Query: 381  SLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             +       +   ++  +           L +  I         +       +L +L   
Sbjct: 329  EVALKGCQYRDFLVLAPNLQEYETYLAPILRQNQIPFFDDLQQQMKYHPLVLLLENLGKL 388

Query: 437  IFKLNDFMAIATLVKHPLAKFGF--------PEKYLSRAKNALELVALRGNKNSYDIMDL 488
            + +  D  A+ +++K  L    +         E    R  + LE  AL            
Sbjct: 389  LQQAGDTPALLSIMKTRLLIPDWYLEGDAEAGEAAYLRDVDQLENFALAHGIKYSLWQKP 448

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                        +      W         +    L D  +  I+ L     ++  +   +
Sbjct: 449  LKDFTKAQVIALDQEQYQKWL--------DRLDKLRDFFVSKISRLARQLKSEKDSMTAV 500

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID- 607
             +     +       +     +   +   ++  +        +      +  N   +   
Sbjct: 501  KLFFDFLVKNGVSARLEAWRLKASESGDLQQAQQPEQCWNLLLSLLKDYLLVNPENFAWA 560

Query: 608  ----IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--------NEGVWP 655
                ++T                 + +      +   +  + + G         N+    
Sbjct: 561  DFFKMLTAAFSQANFATIPASLDAVTLSEYGMVQTSGYKQVFIIGAANGSLPQINDQPNF 620

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTI 711
              T     L+     +  L+ +++             +A  +  +  +  +   NN    
Sbjct: 621  LTTENLASLADFFDQEAYLEDSQQLRNLDQEYQFGNALALASDRVYISYPVINSNNDLLD 680

Query: 712  ASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------ 758
             S + +RLL L                K R +        L        Y          
Sbjct: 681  PSIYYKRLLKLVNGREYRQRDLPDTAEKDRTEFARQLLLFLTSPRASLGYLAYAEENSAQ 740

Query: 759  -------------------------------PFPPLEAQPRTY-------SFSEIKQLIN 780
                                           P    E             S S+++    
Sbjct: 741  SPLVAKLVELSRQYEEEKAEEITEGMAYDNNPQDISEDLAERLYGKDLLSSVSQLESYYQ 800

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------- 829
            + +  +    L+L      + + +    G  FH     L+K+   KN             
Sbjct: 801  NSFEYFLNYGLRLRPR--AENELNAIQSGNYFHRTFELLLKEMQKKNIEIDKLSELDLEL 858

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK----ISHSFLEHEEK---IQSSIEKIF 882
             +  +  +I+     ++ L    +      F K    ++ S+   +++     +  E  F
Sbjct: 859  LLKQVRSKILQEPLYQQFLRDPFNEYLFKAFDKTTSKVAQSYRRKQQENKMRATYGELAF 918

Query: 883  --VNIPAKMAIES------IGIHLTGFADRIDL-LKSGFVD--ITDYKTG-DNPKKETAQ 930
                  A + +          I L G  DR+DL      V   + DYK+   +       
Sbjct: 919  GPAEKLAGLVLPLKKFAGQRKISLRGKIDRVDLFNGDQHVLGQLIDYKSSDHSFNLARFA 978

Query: 931  KLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962
              +D Q+      L+      +      +   FY
Sbjct: 979  SGVDLQMIAYLDVLEKNQDLLAGGRQFDLLGAFY 1012


>gi|227810113|ref|ZP_03989026.1| predicted protein [Acidaminococcus sp. D21]
 gi|226904693|gb|EEH90611.1| predicted protein [Acidaminococcus sp. D21]
          Length = 532

 Score =  109 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 67/552 (12%), Positives = 146/552 (26%), Gaps = 78/552 (14%)

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            L   L   I      L    T         S+ +     +  L    L            
Sbjct: 7    LWESLSQSIEPSHVSLWKKLTVLMHVSRLGSLPELFDAIMETLHVESLLLAMPHGREKMA 66

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
               K L S+ +           + ++ ++++ R+   E+       + ++ I+   +S+ 
Sbjct: 67   NVWK-LRSMAASFAMQEGGGSEDFLDRLNLMRRMQARESGAALEPDAKSVQIMTIHKSKG 125

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSR-----------VMQSDLNLKTAEKYIGQA--- 684
            L F  + L        P                        ++ L  + +E         
Sbjct: 126  LEFPAVFLPDQQYKSPPDRLGLQYLPGAGLGIMIPGDEGPQKTALYEELSEDNRALEWEE 185

Query: 685  --AHDFEMANGTRHLIYTRSLRENNIPTI---------------ASRWLQRLLVLG-GTD 726
                 +         ++  +       ++                   L+R+   G G D
Sbjct: 186  KKRQLYVAMTRAEKYLFLSAAVSEEKESVRREKRAKGRVKSRENWYESLRRIFHDGEGKD 245

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT----YSFSEIKQLINDP 782
              + ++ +    L            P       F  L+A         S + +      P
Sbjct: 246  LVEWVELKASEILALPLSFSIQEAPPLELEAGAFEKLKAVEFPQKVILSATALGTYDLCP 305

Query: 783  YAVYARRILKLDFIPHFKKD-----PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
               + +    +  +                 GT  H ++         K           
Sbjct: 306  RRYFYQYRSHMPSLDPDVVGTGSVRIPPATLGTYIHKVLELCRTAPAEKAKELA------ 359

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK---MAIESI 894
                   +E+       + R     +  ++L                +  +   M + + 
Sbjct: 360  -----LLEESYSDGEKNVLRKEGGPLIDAYLASPLYAAYGDFPQDAEVDFELPLMTVGNA 414

Query: 895  GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
             ++  G  D++  L  G ++I DYK+G  P     +K    QL++ + A +A     +  
Sbjct: 415  SVYFEGSIDKVVHLPDGTLEIIDYKSGHPPLDGMERKAYSRQLAIYSLAAEA-----LYH 469

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN--GEQPFISHL 1012
             KV+      L+     +    D++              L  ++T LQ    E+ F    
Sbjct: 470  MKVSQASLHFLRNLSTWELTDRDREA-----------AELKALLTKLQTLGEEEDF---- 514

Query: 1013 RLSEKSNIQSEY 1024
             +   +     Y
Sbjct: 515  AVKTDACTYCGY 526


>gi|168181295|ref|ZP_02615959.1| ATP-dependent nuclease subunit B [Clostridium botulinum Bf]
 gi|237793750|ref|YP_002861302.1| ATP-dependent nuclease subunit B [Clostridium botulinum Ba4 str. 657]
 gi|182675234|gb|EDT87195.1| ATP-dependent nuclease subunit B [Clostridium botulinum Bf]
 gi|229261419|gb|ACQ52452.1| ATP-dependent nuclease subunit B [Clostridium botulinum Ba4 str. 657]
          Length = 1147

 Score =  109 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 30/255 (11%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S +++    P+A + +  LK      F       D G L H ++ +  +K   +  
Sbjct: 774  KMSVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGILMHGVLEKFSQKLEKQGL 831

Query: 829  P-------EINHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875
                         + ++I+   + ++L          +      KI     +L  E   +
Sbjct: 832  EWDTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILRRSIWLIGEHIKR 891

Query: 876  SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTG- 921
             + +  +  +   +  +             ++L G  DR+DLL K G     I DYK+G 
Sbjct: 892  GNFKPSYYELSFDIDGDYPPIAMELHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSGI 951

Query: 922  DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               K       +  QL +   A L   +       +   L Y++L      + +    K+
Sbjct: 952  KEFKLSDVYYGLQLQLLIYLDAILTELAERSEINGEPGALLYLKLDDPIVKNTVDMSDKE 1011

Query: 981  YSADELSEKSLKNLI 995
                 +    +K LI
Sbjct: 1012 IEKSIIKNLKMKGLI 1026


>gi|284922758|emb|CBG35846.1| exodeoxyribonuclease V gamma subunit [Escherichia coli 042]
          Length = 1122

 Score =  109 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 112/1084 (10%), Positives = 256/1084 (23%), Gaps = 161/1084 (14%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++  L+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11   DVLEELMEFIVECERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63   PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLADD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                    L+   AD+ D        W       N  +           L  A   +T  
Sbjct: 119  SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWEAGNLVEGLGEAQAWQAPLWKALVEYTHE 178

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            L +             +                + I G +   P   + +  +  H    
Sbjct: 179  LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297
            ++      +    I +              ++                            
Sbjct: 238  LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342
             LL        D   L +           +                +             
Sbjct: 298  PLLASWGKLGRDYIYLLSDLEGSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                +    +    + +      + + E   +   L   L+E+     +   ++ AD + 
Sbjct: 358  FSRSDNKRLLDPLDNSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417

Query: 399  ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                   +         +   IS      +        SLL+          +  L+  P
Sbjct: 418  YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454  LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
            +    F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478  VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537

Query: 505  VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                    S    + +  L  + +    + L+     +        + +W  +    L  
Sbjct: 538  ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
              L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598  FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                + I   +  R + F  + L G+N+GV+P+  A   F   +M          +    
Sbjct: 656  AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 712

Query: 684  AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727
                 E     +  L  +   R   +N     S  +Q L+   G                
Sbjct: 713  RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772

Query: 728  -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
                                  + G+        L   ++          P     P T 
Sbjct: 773  EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827
                +++    P   + +  L+++F     + PD       G   + I  +L+   + ++
Sbjct: 833  PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892

Query: 828  TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
              E      +   D                     +++   +      Q           
Sbjct: 893  DAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 940

Query: 887  AKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
             ++ +   G+ +TG             G              P   +  +    QL LE 
Sbjct: 941  MEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWLEH 984

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
                A                           +  D +       +E++L  L +++   
Sbjct: 985  LVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGY 1027

Query: 1002 QNGE 1005
            + G 
Sbjct: 1028 REGM 1031


>gi|301060340|ref|ZP_07201203.1| exodeoxyribonuclease V, gamma subunit [delta proteobacterium
           NaphS2]
 gi|300445536|gb|EFK09438.1| exodeoxyribonuclease V, gamma subunit [delta proteobacterium
           NaphS2]
          Length = 1202

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 109/945 (11%), Positives = 230/945 (24%), Gaps = 105/945 (11%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L    V   +  PL P  L      V +    Q L+    +  G   +     +     +
Sbjct: 43  LRKVAVGWIKKHPLAP--LEDEVFIVQSNGMAQWLKLALAQNDGCGISAAVSFQLPARFL 100

Query: 86  EEKFTADL-LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
            + + A L   +  L  P         L RL+    ++  D   ++     LS       
Sbjct: 101 WQAYRAFLGPDTIPLESPYDMEPLKWRLMRLLKNLTHE--DGFPEIAE--YLSDDHDAIK 156

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA---------SKYW 195
              LA  LAD+ D  +     W              W    D+++           +  W
Sbjct: 157 RYQLACRLADLFDQYQVYRADW-----------LEDWTRGQDWIRNVSGNPAPLPSTHRW 205

Query: 196 TERL--------VELNASSPVGYQIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATAR 244
             RL         ++N  S   +        A        G    +II G +     T  
Sbjct: 206 QARLWRLIQRDVPDVNRDSSRFHLHRRFLKAARTASSPPPGLCRRVIIFGISALPEQTLE 265

Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HPQYSLA 297
            +  +  H      +     +    I                   T          Y   
Sbjct: 266 ALHALDRHTQILFFVLNPCRYYWADILEKRDLLRLKQPPHLQPDGTLSKAHSESVHYEFH 325

Query: 298 KLLDFLD-IKREDVKRLGNVSNEMYGRSM------VISKSFLPPDTSDMRNTDILENKIP 350
            LL       R+ +  L         R+                D   +         + 
Sbjct: 326 PLLASWGKQGRDTIGLLNQYERTGTARNGFGEIDLFDDVVSKKKDAPLLHQVQQAILDLK 385

Query: 351 NIQKCFS----------DVALIEADNEREEAISIAIALR----MSLDENKKKSALITADR 396
            +                +      + + E   +   L      + +   +   ++T D 
Sbjct: 386 PLPSVNGSKNTVSSKDLSITFQLTYSRQREVEVLQDHLLSLFKETRNLTPQDIIVMTPDI 445

Query: 397 NLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           ++       +           I   I+     +          LL+             L
Sbjct: 446 DVYTPHIESVFGNLVPHDPRFIPFAIADRPNPTGVAMLRGFEKLLSLPASRMTQSEFLDL 505

Query: 450 VKHPLAKFG--FPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQK 500
           ++ P  +      ++ + + +  ++   +R   N               +     +    
Sbjct: 506 LQIPAVRHRFGLAKQDVRKLQQWIDGAGIRWGLNGEQRTAFELPPDITANTWQFGLRRML 565

Query: 501 NNTHVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               V   +     E  +    L  + I          + +  +     S   W    +T
Sbjct: 566 LGYAVGAGEPWRDIEPYDEIGGLEAELIGPLHDICSRLEKHWQALKKPASPKGWYDRMMT 625

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
            + +  L        ++     + L +     ++       +     D+  R I    + 
Sbjct: 626 LINDFFLPADSNDQLIYSLLH-EILETWQKDCLDADLKEPLSLAVVRDVWLRTIKDRHMS 684

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                   +     +  R + F  + L G+N+G +P++     F               +
Sbjct: 685 QHFLVGP-VNFCTLMPMRAIPFKIVCLLGMNDGEYPRSHTPENFDLMTFPGFYRPGDRSR 743

Query: 680 YIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                    E     R  L  +   R   +N   + S  L +L       +       G+
Sbjct: 744 REDDRYLFLEALLSARERLYISYIARSVIDNTERMPSVLLSQLRDYLAEGWRIEAGLPGE 803

Query: 737 CYLDWTRKLDYTTKQPHYKRP---KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
              +  R L     + H  +P     F P + +      SE ++++N P   +    L  
Sbjct: 804 KVAEPARTLPDQLTRLHPLQPFSKAYFMPHKTRKPFTYSSEWRKMLNPPEPGWNPHRL-- 861

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                    P          N +     +R+N    +   + +       +  +      
Sbjct: 862 -PPAMMDAGPGLIQWIRCLKNPVKSFFNQRLNIYFDDAETINRDQEPFSLDALSPFNLGQ 920

Query: 854 IIWRHLFHKISHSF--LEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
            + +         +    HE   +               +   G 
Sbjct: 921 RLLKAGLAAPVTEYKKAVHEAAKRLQRT---------GELPPGGF 956


>gi|227541923|ref|ZP_03971972.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182366|gb|EEI63338.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 1228

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 79/691 (11%), Positives = 183/691 (26%), Gaps = 72/691 (10%)

Query: 46  SVTIYVPTKRAIQELRS-------EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98
            V     T++A Q L+        +  +    +S              + +  +L+  Y 
Sbjct: 63  QVLGLTFTRKAAQNLKQKIRSSLFDLHQKVQGQSVRAEENLDASVFTYDAYAQNLVREYG 122

Query: 99  LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA-NAIWLAKNLADIID 157
           L  P     R++  A ++ I    + D       E+      + A   + L   +   + 
Sbjct: 123 LLLPTEPGSRIISQAEMVQIATAIVEDFHGTFPDETATKSTSNVATKIVSLVNAIESNMR 182

Query: 158 IIE-TEEKKWEDLHALKNEKYGM-------WWLLAADFLKIASKYWTERLVELNASSPVG 209
             E       E L  + N +                  L      + + L +   ++   
Sbjct: 183 TAEDVRGATAEALRVIDNVERATKDTTKFIATQDTRVVLLKLVDTFNQYLKDNRLTTFSH 242

Query: 210 YQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH-PNGAIVLPGLD 263
              A  R            +     +++     +  +    + ++      G  V    D
Sbjct: 243 TMAAAARLASGEPSVGSSERHRYRVVMLDEYQDTSHSQRIFLRSLYGTGEPGLAVTAVGD 302

Query: 264 CHIPTAIWNTITEKSTNITSSNTT--YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                  W      +     ++       +P  +  +    L++              + 
Sbjct: 303 PMQAIYGWRGANSSNLANFVTDFPHTVEKNPDGTPVQPAKKLEMTTSFRNP-----GAVL 357

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR-- 379
           G +  IS + L            +    P       +V L   + E EEA  +A  L   
Sbjct: 358 GVANHISGAILEATGEYAPEERSVAELEPRAGAGDGEVLLANFELEEEEADFVARQLAAE 417

Query: 380 -----------------------MSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
                                   + +    ++A++    +        L ++ +   + 
Sbjct: 418 YHGVSDDQLDEYVATLADSAQPTRATNAQPFEAAILVRQHSQVPEAVKALEKYKVPYHVH 477

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
           +   L        L S+  A+ +  D  A+  ++  PL K GF +      +        
Sbjct: 478 SLAGLLMMPEIVDLVSIAKALARPEDSSALLRILTGPLVKLGFADVKALTNRARTLNSYQ 537

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCITP 533
           R    +    +      D     +++   P       E +  LA     L D +      
Sbjct: 538 RDKATAETTTEDAVNAADESGATESDADNPALVRLKKEIEDALAEDTVFLGDALADLGDA 597

Query: 534 LVTYKTNKNSTCGNLSISDWTKLT---------VTCLQNVCLDEHRKLPNLWFEEEG--- 581
               +          S   W +              ++N        L      + G   
Sbjct: 598 SQYTEEGYARLTSLASRFRWLRGHSLASGLQDIFQDIENTFGIRTEVLARENPRQLGVPG 657

Query: 582 -KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV--KPKIEKSSTLFILGTLESRL 638
              L +    + +  S   A    +++ +    +   +    +    + + I+    ++ 
Sbjct: 658 TSHLDTFHGYVADFASIDGATLRGFLEYLDAEAEDRAMDQGEQTVSPNRVDIMTVHAAKG 717

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
           L F T+ + G N  ++          +   +
Sbjct: 718 LEFATVAVIGANSKMYKDGQQTITTETAASR 748



 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 73/225 (32%), Gaps = 32/225 (14%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              + +EI QL  +P  + A+R L+            +  RGT FH  I E         T
Sbjct: 1027 RINATEIVQLKKNPEEL-AKRRLRPVPFKP----NSQAKRGTKFHQWIEEHY----TLPT 1077

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
               +  +  I +     E               ++  +FL      +     + V    +
Sbjct: 1078 LLDDDQLPGIGEEDVTAEE------------LAQLKENFLASPWADR---TPVAVEQAIE 1122

Query: 889  MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE----AAAL 944
              I S    +TG  D +     G   + D+KTG  P +      +  QL+      A   
Sbjct: 1123 YQIGSK--RVTGKIDAVFRNTDGTWTVVDWKTGKVPSQRDLPA-LSLQLAEYRLAWAEIQ 1179

Query: 945  KAGSFSQIDCRKVAN-LFYIRLKQKFKIDCITNDKKKYSADELSE 988
                   +D  +V    FY+R     K + + +        EL E
Sbjct: 1180 SKREGRHVDPSEVEAVFFYVREGYTLKPETLMDKDDLRRLIELEE 1224


>gi|168242763|ref|ZP_02667695.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194449813|ref|YP_002046965.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194408117|gb|ACF68336.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205337972|gb|EDZ24736.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 1123

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 102/915 (11%), Positives = 226/915 (24%), Gaps = 88/915 (9%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLK 732
             + F  A     + L  +   R   +N     S  +Q L         L G +     +
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN--DPYAVYARRI 790
              +     TR            +P        +    +    K   +   P        
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
           L L+ +  F   P R                +  +    E+  L +  ++       +  
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 851 HIDIIWRHLFHKISH 865
                    F     
Sbjct: 892 DDTERLFRRFRAAGE 906


>gi|290957554|ref|YP_003488736.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
 gi|260647080|emb|CBG70179.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
          Length = 1223

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 76/658 (11%), Positives = 172/658 (26%), Gaps = 57/658 (8%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90
               +    V     T +A  EL     +   +     P +       G+ V      F 
Sbjct: 67  GTGQVAPEQVLGLTFTNKAAGELAERVRKALVRAGITDPDVIDPDHPPGEPVISTYHAFA 126

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL  + L   +    RLL  A    +    L +        SP   P    +   L  
Sbjct: 127 GRLLTDHGLRIGLEPTSRLLADATRYQLAARVLRE--------SPGPYPALTRSFPDLVG 178

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYW 195
           +L  +   +     + EDL A   E                       A   L      +
Sbjct: 179 DLLTLDAELAEHLVRPEDLTAHDIELLRELEGVALTNADLRKVPEAAAARRELTELVVRY 238

Query: 196 TERLVELNASSPVGYQIALMRA----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
                E +            R     E   +++     +++     +  A   L++ +  
Sbjct: 239 RAAKRERDLLDFGDQIALSARLAGLPEVGRVLRDEFRVVLLDEYQDTSVAQRVLLAGLFG 298

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
              G  V    D       W   +  + +    +  +    + +   L            
Sbjct: 299 GGTGHPVTAVGDPCQAIYGWRGASVANLDDFPDHFAHPDGRRATRQAL------------ 346

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                S        ++  +    +     +  +   +     +    V     +   EE 
Sbjct: 347 -----SENRRSGGRLLDLANGLAEPLRAMHAGVEALRPARGAERDGVVRCALLNTHAEEL 401

Query: 372 ISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
             +A ++   +   K+    A++         ++  L    + +++     L      + 
Sbjct: 402 DWLADSIAHLVRTGKEPGEIAVLCRTAGDFAEIQGALVARDVPVEVVGLSGLLHLPEVAD 461

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           L ++   +       ++  L+  P  + G  +  L   +    +   R + +      L 
Sbjct: 462 LVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARRLVSHARVDGDQDPDRRLA 521

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
           + V     ++  +             + E     +              T       +L+
Sbjct: 522 AAVEGVDPSEVVSLADALDTFLELPLEAEREDDGLPFSPDARVRFARLATELRDLRRSLA 581

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII--ETGSCIKANAIEWID 607
                 L           E    P+       +TLS+           S  +A  + ++ 
Sbjct: 582 DPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDIAASFAANSAGEATLLAFLG 641

Query: 608 IITRLI--DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
            +      +           +T+ +L    S+ L +D + + GL  G +P    +  +
Sbjct: 642 FLRTAAQYEKGLDNALPGGENTVKVLTAHRSKGLEWDVVAVPGLVTGTFPSTQGREKW 699



 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 78/758 (10%), Positives = 177/758 (23%), Gaps = 73/758 (9%)

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            R ++ +       +    +D             +  + +   +            L  FL
Sbjct: 492  RDLALLGRRARRLVSHARVDGDQDPDRRLAAAVEGVDPSEVVSLAD--------ALDTFL 543

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
            ++  E  +    +      R      +    D        +++     +     +V L  
Sbjct: 544  ELPLEAEREDDGLPFSPDARVRFARLATELRDLRRSLADPLMDVLHRVLAVTGLEVELSA 603

Query: 364  ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI--PL 421
            + +      ++A   R +L      +A   A+      +   L           G+   L
Sbjct: 604  SPH------ALAARRRETLSNFLDIAASFAANSAGEATLLAFLGFLRTAAQYEKGLDNAL 657

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                ++  + +   +     D +A+  LV          EK+ ++ K     +    +  
Sbjct: 658  PGGENTVKVLTAHRSKGLEWDVVAVPGLVTGTFPSTQGREKWTAQGKVLPHTLRGDADTL 717

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                      +       K++ H    +       +  ++LL        +       + 
Sbjct: 718  PDVGAWDSRGLKAFQEAMKDHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKRPRGPSD 777

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
              T  +   +                     P L                        A 
Sbjct: 778  FLTALHDHCAAGYGEIEAWADEPGEGAE--NPALHRSAADHAWPLPLDDTALLRRRAAAA 835

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
             +          +G                 +                 +        ++
Sbjct: 836  TVLAHLERAASHEGTDPADHASGHPFSDHPSSDHPDWPPPSDDEEPFYEDIHPDDVPHED 895

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
                     D    T +        D   ++   H++        + P   +R       
Sbjct: 896  DVPPADAFGDPGEDTGDW-------DSWSSDRPPHVV----HAREDPPEQDARPPAVPHA 944

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                       +  +    W R LD    +    R +        P + + +++ +L  D
Sbjct: 945  RRHPAASGLSPEEARTVASWDRDLDALAGELL--RARAKVTDVPLPASLTAAQLMRLAAD 1002

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
            P    A+ + +    P          RGT FH  +    ++                   
Sbjct: 1003 PDGF-AQELARPMPRPPQ----PAARRGTRFHAWVEARFEELRLP--------------- 1042

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
              E   LP     I      +        E    +      V  P ++ I      + G 
Sbjct: 1043 MLEPGELPGSEAEIADERDLEALKE--AFERTPYAHRTPYRVEEPFQLGIAGR--VVRGR 1098

Query: 902  ADRIDLLKSG---------FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             D +  L  G           +I D+KT      +        QL++   A       Q 
Sbjct: 1099 IDAVYRLGDGDGGSDGDGTTYEIVDWKTSRTRNADP------LQLAVYRLAWAE---QQG 1149

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
               +     ++ ++    +       +      L E +
Sbjct: 1150 VPLESVKATFLYVRTGDVVRPENLPDRDALERLLLEDA 1187


>gi|260599163|ref|YP_003211734.1| exonuclease V subunit gamma [Cronobacter turicensis z3032]
 gi|260218340|emb|CBA33354.1| Exodeoxyribonuclease V gamma chain [Cronobacter turicensis z3032]
          Length = 1123

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 102/958 (10%), Positives = 232/958 (24%), Gaps = 115/958 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ A++   + +    DP  P       + V +    Q L+    +  G  + I     
Sbjct: 11  DVLEAIMEFIVEQQPLPDPFEPE-----IVLVQSTGMAQWLQMSLAQKFGIAANI--EFP 63

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
                + + F   L       P  S   +     +L+ +    L     D+     L   
Sbjct: 64  LPASFIWDMFVRVLRDI----PQESAFTKQNMSWKLMKLLPGMLASPDFDML-RHYLHDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                   LA  +AD+ D       +W     A                L  A    T  
Sbjct: 119 EDKRKLFQLASRVADLYDQYLVYRPEWLTRWEAGDVVDGLGDPQRWQAPLWRALVEHTAE 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             +R               + I G +   P   + +  +  H +  
Sbjct: 179 LGQPQW-HRANLYQRFIRTLENAQSCPEGLPARVFICGISALPPVYLQALQALGKHIDVH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------THPQYSLA 297
           ++      +    I +                                       Q    
Sbjct: 238 LLFTNPCRYYWGDIQDPAFLARLLSRKRKLHAREGTAPLFKDSETASALFNDDGEQEVGN 297

Query: 298 KLLDFLDIKREDVKRL---------------GNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     + +             
Sbjct: 298 PLLASWGKLGRDYTYLLSGLERFEEMDVFVELEPDNLLHSLQFDLLELRNQALAGVTLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +      +++    + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 FERSDGKRELDPNDRSISVHVCHSPQREVEILHDQLLQMLEADSQLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         +   IS               +LL+          +  L++ P
Sbjct: 418 YSPFIQAVFGSASQERYLPFAISDRRARQAHPALQAFITLLSLPDSRFVSEDVLALLEVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
               +F   E+ L   +  +    +R   +  ++ +L        +              
Sbjct: 478 SLSARFNISEEGLRFLRQWVNESGVRWGIDDDNVRELALPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
             H     S    + +  L  + +      L+     +     +  +++W  +    L +
Sbjct: 538 ESHLGEWQSVLPYDESSGLIAELVGHLAELLMQLNLWRKGLSQSRPLAEWLPVCREMLDS 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
               +      L   E  +   ++  + I      +       D + +++D E +  +  
Sbjct: 598 FFAPDAETEAALALIE--QQWQAIIEQGIGAHYEDEVPLNLLRDELAKMLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               +     +  R + F  + L G+N+GV+P+  A   F   +M          +    
Sbjct: 656 AGP-VNFCTLMPMRSIPFKVVCLLGMNDGVYPRTLAPLGF--DLMSQKPQRGDRSRRDDD 712

Query: 684 AAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727
                E      + L  +   R   +N     S  +Q L+                    
Sbjct: 713 RYLFLEALISAQQQLYISYIGRSVQDNSEKYPSVLVQELVDYLAQSHYLPGDEALNCDES 772

Query: 728 -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK-PFPPLEAQPRT 769
                                 +  +    + R+      +     P+   P        
Sbjct: 773 ARRVKAHLMQLYPRTPFDAENFQPDREIQSYAREWLPAASEQGEAHPEFIKPLAPVTLEE 832

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL----FHNIITELIKKRIN 825
             F + ++    P   + +  LK++F     + PD           +H     L      
Sbjct: 833 LPFEQFQRFWRHPVRAFFQLRLKVNFRTEESELPDAEPFTLDSLGRYHMNQQLLNTLVEQ 892

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
           ++   +    +   +                      ++   L  E     S E    
Sbjct: 893 QDPEALYRRYRAAGE--LPYGAFGELFWESQLQEMQTLAERVLA-ERDSGESREIALA 947


>gi|217977592|ref|YP_002361739.1| double-strand break repair helicase AddA [Methylocella silvestris
            BL2]
 gi|217502968|gb|ACK50377.1| double-strand break repair helicase AddA [Methylocella silvestris
            BL2]
          Length = 1151

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 93/859 (10%), Positives = 205/859 (23%), Gaps = 72/859 (8%)

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
            + L    L          +  +      L      A  +  +  L  ++D I    +K +
Sbjct: 301  KRLLTRGLAAKNLAIEAALYAEQERLDRLRAEEKSAATLERSAALGRLVDAIFARYQKLK 360

Query: 168  DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
                     +          L+ +   W    ++      +    A   +EA+  +    
Sbjct: 361  YER--VILDFDDLVAKTLTLLERSDASWVLYKLDAGIDHILID-EAQDTSEAQWRILEGL 417

Query: 228  GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
                  G         R    V +         G   H+   +      K  N     + 
Sbjct: 418  MADFAVG--HGRNLAPRTFFAVGDEKQSIFSFQGAAPHMFHEMQRKFERKFINGGERFSH 475

Query: 288  YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                  +  A  +              +         M        P   ++  +     
Sbjct: 476  VRLTHSFRSAAGVLGAVDSVFGRAESQSGLVAPADVWMGHEPLKTLPSLVEIWPSVGAGG 535

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN------------------KKKS 389
            K  N           E+D     A  IA  +   ++                        
Sbjct: 536  KAENSDWRLPLDFRDESDPPSRVATRIAEKIAALIEPRSGERVHDGESGVLRAVRAGDIL 595

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
             L+         V   L + G+ +  +  + L   +    L +   A     D + +A  
Sbjct: 596  ILVRTRGPFFEAVIRALKQKGVPVAGADRLKLGEHIAVQDLVAAGRAALLPEDDLNLAAA 655

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
            +K PL      +                  +       L +    R    +        +
Sbjct: 656  LKSPLIGLDDDDLIALA-----------PGRPGSLFAALLASPDSRFRPARETLGRWRAR 704

Query: 510  SRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
            +         ++L  D   + I   L     +       L+++   +   +    +   E
Sbjct: 705  AAARPFAFYASLLGEDQGRRAIEGRLGVEAVDAVDEFLRLALAHEAEPAPSLAGFLADFE 764

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                         + +        +    +  +A + ++     +         +   ++
Sbjct: 765  T----------VQREVRRDMESGGDVVRVMTVHAAKGLEAKIVFLPDTCGGLSAQHDPSV 814

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            F L                G    VW    A++   +   +  L     ++        +
Sbjct: 815  FALEETH-----------LGAAPVVWSPRKAEDCDKAAAARKRLRELAEDE---YRRLLY 860

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                     IY         P         ++                      R+L   
Sbjct: 861  VALTRAEERIYICGFHGAKKPPELC--WANMIEATLAPTLQQAPAFWNVEEFVLRRLSPG 918

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP-DRTD 807
                  +   P          +    +  L      +     L             +   
Sbjct: 919  ADLAVQETAAPVEGGSLIAPGWLSRRLDPLEEPAAPMRPSSALAASDRRADAAGRREALQ 978

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
             G+L H ++  L  + +          +     +   K       + + +     I+   
Sbjct: 979  LGSLTHILLQYLPDQPVEARARAGLAYL-----AVRAKGLDEAAHERLLQAALAVIAAPQ 1033

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIESI-GIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
            LE    +  +  +  V +  K+A+     + + G  DR+  L  G V + D+KTG  P  
Sbjct: 1034 LE---PLFGAGSRAEVAVAGKIALPGGASVDVIGRIDRL-GLSEGEVWVADFKTGAPPAP 1089

Query: 927  ETAQKLIDPQLSLEAAALK 945
                +    Q++L  AAL+
Sbjct: 1090 GEVPQSYLTQMALYRAALR 1108


>gi|254563798|ref|YP_003070893.1| helicase-exonuclease type V protein family [Methylobacterium
            extorquens DM4]
 gi|254271076|emb|CAX27083.1| putative helicase-exonuclease type V protein family [Methylobacterium
            extorquens DM4]
          Length = 1147

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 92/843 (10%), Positives = 205/843 (24%), Gaps = 68/843 (8%)

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAA 185
            + +     PL   +  A A+     L  +   I    E +   L AL  +          
Sbjct: 321  LDEQARLIPLFDALRAARALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIH---KTL 377

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            D L      W    ++      +           +            A   G+   T   
Sbjct: 378  DLLSRVGASWVLYKLDRGVDHVLV--DEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTR 435

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
               V +         G D              +          S    +  A  +     
Sbjct: 436  F-AVGDPKQSIYSFQGADPREFELTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVD 494

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                V       +   G    +  S        +    I E         ++  A ++A 
Sbjct: 495  AVFGVPDHFAGLSFDAGAPGTVHASARAGVPGAVELWGIEEPAEAEEPDAWA--APVDAP 552

Query: 366  NEREEAISIAIALRMSLDEN-------------KKKSALITADRNLARRVKLELTRFGIN 412
                 AI +A  +  ++                     L+         V   +   G+ 
Sbjct: 553  EPNAPAIVVARRIARAVKTWTTKGDACGRIWRPGDVLILVRKRSAAFEEVIRAMKGLGVP 612

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            +     + ++  +    L ++  A     D + +AT +K PL      +     A+    
Sbjct: 613  VAGQDRLEVAGHIAVLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFA 672

Query: 473  LVALRGNKNSYDIMDLKS----LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                          D  +      L              + + L       + L+     
Sbjct: 673  ETLEDALTRHAQAGDGAAIRGLAALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGG 732

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
            +    +  +    +                     +       +        G ++    
Sbjct: 733  EAGDAIDVFLAQASDAEN-----------GGDAPCLDAFLADYIVRPGRGRSGLSVKRDL 781

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                     +  +  + ++    ++              L +  T +  L          
Sbjct: 782  ESGRNEVRVMTVHGAKGLEAPVVVVIDGCEPLGRNDPPLLGLDSTADGPLPP-------- 833

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
                VW     ++   +   +S L  +  E++         M     HL+          
Sbjct: 834  ----VWTGGRTQDCAATLAARSALQARAREEHNRL--LYVAMTRAADHLVIAPYRGATRE 887

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL-EAQP 767
               +   + R+ +  G    + ++        W      +          P P       
Sbjct: 888  TPASWCEMVRIGLERGLGDGEAVETDHGPITIWRDGSAASLAAAAADTAPPEPETVPDWL 947

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             + +  E +       +                 D +   RG L H+++  L +    + 
Sbjct: 948  FSAAAPEAEAAPPLSPSGALGAADGQRQPRRRLGDAEARRRGALVHSLLEHLPRIEPARR 1007

Query: 828  TPEINHLMKQ---IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                +   +     ++    K+ +   + +I       +       E             
Sbjct: 1008 AEAADRFARARAPTLEEAKRKDLVRAVLRLIEAPDLASLFSDQARAEVA----------- 1056

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-AQKLIDPQLSLEAAA 943
            +  ++ +E I   +TG  DR+ +++ G V + D+KTG  P  +    +    Q+SL A  
Sbjct: 1057 LSGRIVVEGIERDVTGRIDRL-VVEDGRVILCDFKTGRPPADDAPLPEREAAQVSLYARL 1115

Query: 944  LKA 946
              A
Sbjct: 1116 AAA 1118


>gi|16766298|ref|NP_461913.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16421545|gb|AAL21872.1| exonuclease V, subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
          Length = 1123

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 104/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +      +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMFND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P++ A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRHVAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|315656387|ref|ZP_07909276.1| putative UvrD/REP helicase [Mobiluncus curtisii subsp. holmesii ATCC
            35242]
 gi|315492946|gb|EFU82548.1| putative UvrD/REP helicase [Mobiluncus curtisii subsp. holmesii ATCC
            35242]
          Length = 1164

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 115/1038 (11%), Positives = 261/1038 (25%), Gaps = 125/1038 (12%)

Query: 45   ASVTIYVPTKRAIQELRSE---FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              + +  P   A + L          +     +L    S G V E     +        P
Sbjct: 71   PRMLVLSPNAGAARRLSERALEIRAQSEDPGCLL--GVSKGFVAEVFARFNQWRKAEGLP 128

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             V    RL   A +++  ++ L  +  +           +        ++L D I  +  
Sbjct: 129  EV----RLATDAEVMVQIQDFLAGMPLE-------EELRAALETQGFRRDLVDGIFRVRA 177

Query: 162  E--EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
               +   +   +  +              +       +    L+ +S     +  ++A A
Sbjct: 178  FAGDVSSDSAASPVHPLVTRLIQAMQADREAKRSQARQSAWPLDTASLFEEYLLAVKAGA 237

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                      + I            ++S  A   +G  ++           +   +   +
Sbjct: 238  -----PVPELVGIDDLQNFNGLMIDILSLWA--THGTTLVACTLPETCVNTFRGASPHLS 290

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                                ++ L  +      L         R  V   S    ++   
Sbjct: 291  ERLWQQLETIPG-----KGAIEILLTQEHVPAPLRQAWRIAVNRLGVHGISARLWNSIQE 345

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITA 394
             +    E            + L+E   +  +   I   L+ +   + +       A++T 
Sbjct: 346  SSPASTETDSLCDADGRDRIILVEKSTDTAQYQEIGTLLQDAHIFSDRPLKYSQMAVLTR 405

Query: 395  DRNLARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFK------LNDFMAIA 447
                AR+V   L    I + +      L+    +  L  ++ A+            + +A
Sbjct: 406  SSREARQVAEVLENMDIPVVVPGATGQLNEGRLTRYLLKMMQAVCVEDCDQVKLSDLDLA 465

Query: 448  TLVKHPLAKFG-------FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             L+   L  +            Y  R +   +     G+    D  D        I    
Sbjct: 466  GLLSSALVGWDVWRMRRMDSSLYDLRLQPPADSENAAGSTGVMDSADTADDEEGGIQIVG 525

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
            N  ++  +  ++     + +   V  I+  I           +             +V  
Sbjct: 526  NLPYIQQFLRQVISGQNDFSGRSVAEIISAIPDAAQLVDLAQALRSGWQQWKADSGSVQL 585

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-------- 612
            L     D   +   L        L       ++    +  +  +  D             
Sbjct: 586  LLWKLWDGLGRGEILQARALQPGLVPAVRSTLQIDLDLVMDLFKAADWFEARNPGKTAAD 645

Query: 613  ---------IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                     +   TV P       + ++    +   ++  + + GL +G WP        
Sbjct: 646  FAQGMLARDLPTGTVAPHHLVKDAVTVVSAAATVSQHWPLVAVVGLTDGNWPAMRWPGSI 705

Query: 664  LSRVM--QSDLNLKTAEKYIGQ-------AAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
            L   M    +    T     G          H F         +   +  ++ +      
Sbjct: 706  LGSSMFELENYGDPTNSSSAGYLWNWQNEYRHFFTALTRCTQRLILGTTAQDGVGRSTFL 765

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKR----- 756
                  +         L    + ++ + R              +D  T      +     
Sbjct: 766  TSLVQTLQLEPKQHRRLPTNLRDFVAYLRAACLGGETSWGTPTIDAPTAAGLLAKLAAGD 825

Query: 757  -PKPFPPLEAQPRTYS------------FSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
             P   P         S             S +++ + +P            +        
Sbjct: 826  CPSAHPENWMGALPVSGDETESAEIHIYASGLERALENPLDYVLSWS---GYSNDEDDPY 882

Query: 804  DRTDRGTLFHNIITELIKKRINKN--------TPEINHLMKQIIDSHFEKENLPPHIDII 855
                 G + H     L ++   +           ++   ++Q +       +    ++  
Sbjct: 883  AANKVGNIVHEAAEILGRRYWWEGHGPRDDLEFEQVLTELRQEVRRLLGPLSGDTWVESN 942

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES----IGIHLTGFADRIDLLKSG 911
            +R                 Q         +     +E+      +      DR+ +   G
Sbjct: 943  FRRHIETCLVPLATFLVNHQ---YPSRFEVRYPCRLEASSGKGALVYNARIDRV-MFAHG 998

Query: 912  FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
             V I DYKTG+      A+   + QL+L  AA  A    Q     +A +  +++    K 
Sbjct: 999  RVIIMDYKTGNPSNFSAAKVAANLQLALYQAAYNASPDGQKQPCDMAEIVALQVPPDSKK 1058

Query: 972  DCITNDKKKYSADELSEK 989
               T   ++    ++  +
Sbjct: 1059 LYSTQGIEEPREPKVWAQ 1076


>gi|330684449|gb|EGG96172.1| putative helicase-exonuclease AddAB, AddB subunit [Staphylococcus
           epidermidis VCU121]
          Length = 752

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 70/596 (11%), Positives = 157/596 (26%), Gaps = 101/596 (16%)

Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK-ELAVLLV 524
              + LE  A+         +D +   ++         H    + R + E   +L   ++
Sbjct: 4   HLIDLLENFAIERGIYGKRWLDDELFNIENFRKMGRKEHQLTQEERDTFEQVVKLKTDVI 63

Query: 525 DHILQCITPLV---TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
           D IL     +    T +    +   ++   +     +T    +  D +        ++  
Sbjct: 64  DKILHFEQAMNEGKTVRDFATAFYESMEYFELPNHLMTERDMLDNDGY-HEQAEEIDQIW 122

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
             L  +   ++        +   ++++    ++        +    + I     +++ N 
Sbjct: 123 NGLIQILDDLVTVFENENMSLSRFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNK 182

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-------LKTAEKYIGQAAH--DFEMAN 692
             + L G+N+G  P+  + +  +S   +             TA+      A      M  
Sbjct: 183 KHIYLVGMNDGSMPQPISSSSLISDDEKKIFEENAQIELSPTADILQMDEAFVCYIAMTR 242

Query: 693 GTRHLIYTRSLRENNI-PTIASRWLQRLLVLGGTDFFDNLKKRGQCYL------------ 739
            T  + ++ SL   +      S +L ++  +       N+ +  Q Y             
Sbjct: 243 ATSKVTFSYSLMGASGDEKEMSPFLAQIKDIYQDLDAVNIHQMHQAYPMSLIENVHQTKI 302

Query: 740 -------DWTRKLDYTTKQPHYKRPK-----------------------------PFPPL 763
                   W  +           +                                   L
Sbjct: 303 NLFEALRAWLDEEIVAETWIDAYQVMRDDERLNKDLDYLMTSLTYDNETTQLNETLAQDL 362

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
             +    S S  +     P+  YA   L+L+     K +    D G +FH+++  +  + 
Sbjct: 363 YGKTINASVSRFEGYQQCPFKHYASHGLRLNER--TKYELQNFDLGDIFHSVLKYISDRI 420

Query: 824 INKNTPEINHLMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEHEEKIQ 875
                      +K +     E                          I  + L   +   
Sbjct: 421 NGDFKHLDQKKIKALTTEALETILPKVQFNLLNSSAYYRYLSRRIGAIVETTLNALKYQG 480

Query: 876 S--SIEKIFVNIPAK--------------MAIESIGIHLTGFADRID-LLKSGF--VDIT 916
                +        +                 + + I++ G  DRID   K     V+I 
Sbjct: 481 DYTKFKPQQFETGFRKKPKSDDELIAQSLTTKQGVPINIRGQIDRIDTYTKDNQSYVNII 540

Query: 917 DYK---TGDNPKKETAQKLIDPQLSLEAAALKAG----SFSQIDCRKVANLFYIRL 965
           DYK   +            +  Q+      +         + I   K   L Y  +
Sbjct: 541 DYKSSESSATLDLTKVYYGLQMQMMTYMDIVLQNQDRLGLTDI--VKPGGLLYFHV 594


>gi|317128675|ref|YP_004094957.1| ATP-dependent nuclease subunit B [Bacillus cellulosilyticus DSM 2522]
 gi|315473623|gb|ADU30226.1| ATP-dependent nuclease subunit B [Bacillus cellulosilyticus DSM 2522]
          Length = 1171

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 86/266 (32%), Gaps = 33/266 (12%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL--IKKRINKNT 828
            S S ++Q  +  +A +A   L+L          +  D GTLFH  + E+    +R  K+ 
Sbjct: 794  SVSRMEQYQSCAFAQFANYGLRLKERET--YKLEAPDVGTLFHAALKEMADYLRRNGKDF 851

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWR---------HLFHKISHSF--LEHEEKIQSS 877
             +++      +     +E  P     I               ++      +  E+   S 
Sbjct: 852  SQLSKEECSTLAKKIVEELAPKIQREILLSSNKYHYIKQKLEEVVARASHVLAEQSRSSG 911

Query: 878  IEKIFVNIPAK--MAIESIGI--------HLTGFADRIDLLK--SG-FVDITDYKTG-DN 923
               I + +       +  +           L G  DR+D+ +   G ++ I DYK+   N
Sbjct: 912  FSPIGLEVAFGENQDLPPLQFQLQNGTTMELVGRIDRVDMAEGRDGLYLRIIDYKSSAKN 971

Query: 924  PKKETAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYS 982
             +       +  QL +    +   S   +      A + Y  +             ++  
Sbjct: 972  IELSEVYYGLSLQLLIYLDVVITFSERWLGAKASPAGVLYFHVHNPIIQAKEKMTIEQIE 1031

Query: 983  ADELSEKSLKNLIEI---VTLLQNGE 1005
             +   +  +K LI     V  L +  
Sbjct: 1032 TELFKQFKMKGLISANTEVAQLMDEN 1057


>gi|296121632|ref|YP_003629410.1| exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776]
 gi|296013972|gb|ADG67211.1| Exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776]
          Length = 1226

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 89/958 (9%), Positives = 224/958 (23%), Gaps = 183/958 (19%)

Query: 171  ALKNEKYGMWWLLAADFLKIA---SKYWTERLVELNASSPVGYQIALMRAE-----AEHL 222
             L   ++  +   +  +L +A    + +                +               
Sbjct: 315  QLAQTEFVPYAEKSLAWLSVAGESIRDYELIKKSRACVDFDDLLVLSRDLLRNDLTVRQA 374

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKSTNI 281
            +  +   +++     + P  A L+  +         +    D       +          
Sbjct: 375  LSRSIRVLMVDEFQDTDPVQADLVEMICGKELTTGKLFLVGDQKQSIYRFRGADPLVFRS 434

Query: 282  TSSNTTYSTHPQ-------------YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              S    +                 +        +    E ++           R   + 
Sbjct: 435  LKSKIPAAGQLPLTINFRSQPPILHFVNILFRRVMGADYEALEPSFADEKPELERIEFL- 493

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN---------------------- 366
              +   D  + +           + +  +D    +A +                      
Sbjct: 494  --WATTDVVENKAVQGSIPSTVPLAQGLADEQARDAADAESQDVENIDDDSRSDSGEKQT 551

Query: 367  ----EREEAISIAIALRMSLDEN---------------KKKSALITADRNLARRVKLELT 407
                 R EA  IA  +   L +                     ++          +  L 
Sbjct: 552  APFLRRREADWIARRILELLADPTPRIREKSGPWRTIVPGDITILFRALTNLEVYEQALE 611

Query: 408  RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
              GI+  ++ G           L  L   +    D  ++  L++ P   F  P  +    
Sbjct: 612  AAGIDYYVAGGRAFFAQQEIYDLAHLCQFLDDPEDGFSLVGLLRSPFFCFSDPLIHRLA- 670

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
                     R    +  +    S+V      +                           +
Sbjct: 671  --------SRAGGITQSLFAEASVVSGLSPEETA------------------------QV 698

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                  L +          +  ++   +  +       +     L +            L
Sbjct: 699  QFAAQTLGSLVEQ----RDHWPLARIIRRALELTGYEAIVSQEFLGS-RKLANVHKAIEL 753

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
              +    G    A   +  + I +    E      E SS + ++   +S+ L F  + + 
Sbjct: 754  ARQFDLAGGSRAAFVTQLRESIDQESREELAATHPESSSVVRLMSIHQSKGLEFPVVFVA 813

Query: 648  GLNEGVWPKNTA------------KNPFLSRVMQSDLN-----LKTAEKYIGQAAHDFEM 690
             +N     ++               +  L    +  +      ++ A          +  
Sbjct: 814  DMNRPRKTESLPPTLHPQLGALVTPSNPLGERQKHPVGQFIEIMEEAASLEEYQRLLYVA 873

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRL---------------------LVLGGTDFFD 729
            A   R L+   +  +       S W+  L                       +       
Sbjct: 874  ATRARDLLILSAGIKGFDEGKFSPWMLVLKQVFHLETGLLRNDPWFASGHEDVKTPQEIP 933

Query: 730  NLKKRGQC-----------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
             ++   Q                  +     +L+     P  +            R  S 
Sbjct: 934  LIRTHHQPPQFIDHRVQRQGVHKLSFPQVWNELELAESLPWPQLVADVQRGAEGRRRLSV 993

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDP---DRTDRGTLFHNIITELIKKRINKNTP 829
            S +++      +   + ++    +          D    G + H ++         +   
Sbjct: 994  SRLEEFQEQSSSK-LKSLVPAGELEAHSASLSRSDAELLGEMIHGVLERF----EPRAAE 1048

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE-EKIQSSIEKIFVNIPAK 888
            E    +   +    +++  PP   I+ +    +   +F   E     +   ++   +   
Sbjct: 1049 ESEKALLHRLWLWCQRQPAPPGGQILEQA--QQWLKTFASTELIDELAMASELNRELEFS 1106

Query: 889  MAI------ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP---KKETAQKLIDPQLSL 939
            +              + G  D +         I DYKT         E   +    QL  
Sbjct: 1107 LDWKMTGEEPKRETEIYGLIDVLMKDSQDDWIILDYKTSRLAAGVTDELLLQPYRLQLGT 1166

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
             A A++   F ++  +  A L ++R K +  +       +    ++L  +++  L   
Sbjct: 1167 YALAVQR-LFGRLPKK--AELIFMRPKPRR-VVWNMEQVQVSDLEQLVTEAIHQLDAA 1220


>gi|227486915|ref|ZP_03917231.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092989|gb|EEI28301.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 1228

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 79/691 (11%), Positives = 184/691 (26%), Gaps = 72/691 (10%)

Query: 46  SVTIYVPTKRAIQELRS-------EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98
            V     T++A Q L+        +  +    +S              + +  +L+  Y 
Sbjct: 63  QVLGLTFTRKAAQNLKQKIRSSLFDLHQKVQGQSVRAEENLDASVFTYDAYAQNLVREYG 122

Query: 99  LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA-NAIWLAKNLADIID 157
           L  P     R++  A ++ I    + D       E+      + A   + L   +   + 
Sbjct: 123 LLLPTEPGSRIISQAEMVQIATAIVEDFHGTFPDETATKSTSNVATKIVSLVNAIESNMR 182

Query: 158 IIE-TEEKKWEDLHALKNEKYGM-------WWLLAADFLKIASKYWTERLVELNASSPVG 209
             E       E L  + N +                  L      + + L +   ++   
Sbjct: 183 TAEDVRGATAEALRVIDNVERATKDTTKFIATQDTRVVLLKLVDTFNQYLKDNRLTTFSH 242

Query: 210 YQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH-PNGAIVLPGLD 263
              A  R            +     +++     +  +    + ++      G  V    D
Sbjct: 243 TMAAAARLASGEPSVGSSERHRYRVVMLDEYQDTSHSQRIFLRSLYGTGEPGLAVTAVGD 302

Query: 264 CHIPTAIWNTITEKSTNITSSNTT--YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                  W      +     ++       +P  +  +    L++              + 
Sbjct: 303 PMQAIYGWRGANSSNLANFVTDFPHTVEKNPDGTPVQPAKKLEMTTSFRNP-----GAVL 357

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR-- 379
           G +  IS + L            +    P       +V L   + E EEA  +A  L   
Sbjct: 358 GVANHISGAILEATGEYAPEERSVAELEPRAGAGDGEVLLANFELEEEEADFVARQLAAE 417

Query: 380 -----------------------MSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
                                   + +    ++A++    +        L ++ +   + 
Sbjct: 418 YHGVSDDQLDEYVATLADSAQPTRATNAQPFEAAILVRQHSQVPEAVKALEKYKVPYHVH 477

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
           +   L        L S+  A+ +  D  A+  ++  PL K GF +      +        
Sbjct: 478 SLAGLLMMPEIVDLVSIAKALARPEDSSALLRILTGPLVKLGFADVKALTNRARTLNSYQ 537

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCITP 533
           R    +    +      D+    +++   P       E +  LA     L D +      
Sbjct: 538 RDKATAETTTEDAVNAADKSGATESDADNPALVRLKKEIEDALAEDTVFLGDALADLGDA 597

Query: 534 LVTYKTNKNSTCGNLSISDWTKLT---------VTCLQNVCLDEHRKLPNLWFEEEG--- 581
               +          S   W +              ++N        L      + G   
Sbjct: 598 SQYTEEGYARLTSLASRFRWLRGHSLASGLQDIFQDIENTFGIRTEVLARENPRQLGVPG 657

Query: 582 -KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV--KPKIEKSSTLFILGTLESRL 638
              L +    + +  S   A    +++ +    +   +    +    + + I+    ++ 
Sbjct: 658 TSHLDTFHGYVADFASIDGATLRGFLEYLDAEAEDRAMDQGEQTVSPNRVDIMTVHAAKG 717

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
           L F T+ + G N  ++          +   +
Sbjct: 718 LEFATVAVIGANSKMYKDGQQTITTETAASR 748



 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 72/225 (32%), Gaps = 32/225 (14%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              + +EI QL  +P  + A+R L+            +  RGT FH  I E         T
Sbjct: 1027 RINATEIVQLKKNPEEL-AKRRLRPVPFKP----NSQAKRGTKFHQWIEEHY----TLPT 1077

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
               +  +  I +     E               ++  +FL      +     + V    +
Sbjct: 1078 LLDDDQLPGIGEEDVTAEE------------LAQLKENFLASPWADR---TPVAVEQAIE 1122

Query: 889  MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA----AL 944
              I S    +TG  D +     G   + D+KTG  P +      +  QL+          
Sbjct: 1123 YQIGSK--RVTGKIDAVFRNTDGTWTVVDWKTGKVPSQRDLPA-LSLQLAEYRLAWAGIQ 1179

Query: 945  KAGSFSQIDCRKVAN-LFYIRLKQKFKIDCITNDKKKYSADELSE 988
                   +D  +V    FY+R     K + + +        EL E
Sbjct: 1180 SKREGRHVDPSEVEAVFFYVREGYTLKPEALMDKDDLRRLIELEE 1224


>gi|318606958|emb|CBY28456.1| exodeoxyribonuclease V gamma chain; RecC [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|330859634|emb|CBX69973.1| exodeoxyribonuclease V gamma chain [Yersinia enterocolitica W22703]
          Length = 1123

 Score =  108 bits (270), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 91/766 (11%), Positives = 191/766 (24%), Gaps = 87/766 (11%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL+    ++N               + V +    Q L+ +  +     + I 
Sbjct: 11  DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANIE 61

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
                L      +    +L         S      +L  L+      L D       +  
Sbjct: 62  ---FPLPATFIWEMFTRVLPGIPKESAFSKDAMTWKLMWLLP----DLLDNPVFSAMKRY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191
           LS          LA  +AD+ D            WE    + N      W      L + 
Sbjct: 115 LSDDSDKRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIDNLDDAQQWQA---LLWVE 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249
              +T +L +             +R   E           + I G +   P   + +  +
Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIRILLESDACPAGLPKRVFICGISALPPIYLQALQAL 230

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------T 290
             H +  ++      +    I +                                     
Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYRESVEVKLFRDPEQAEQLFNAD 290

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPD 335
             Q     LL        D   L +  +E+      +                +      
Sbjct: 291 GEQDLSNPLLASWGRLGRDHMYLLSQVDEIQEVHAFVDIEPDNLLHGIQHDMLELEDHAI 350

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSAL 391
                 T    ++   +      +++    + + E   +   L   L+ +     +   +
Sbjct: 351 IGTTPETLAHSHQKRVLDLRDRSLSMHVCHSPQREVEVLQDNLLRLLEADPELTPRDIIV 410

Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
           + AD +                  +   IS               SLL+          +
Sbjct: 411 MVADIDSYTPYIQATFGNATGDRYLPFAISDRKASQAHPALQAFISLLDLPQSRFTSEQV 470

Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497
             L++ P+    F   E  L R +  +    +R   +  ++ +L        +       
Sbjct: 471 LALLEVPVLANKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWHFGLTR 530

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556
                    +          + +  L   +   +   L+     +     + S+S+W  L
Sbjct: 531 MLLGYAMDSNAGDWQGVLPYDESSGLAAELAGQLADMLMQLSQWRQQLSESRSLSEWLPL 590

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L      ++     L   E  K    + S  I              D +   +D E
Sbjct: 591 CRQLLDTFFEPDNGTEAVLVLIE--KQWQKVISYGIAAQYPDIVPLNLLRDELASRLDNE 648

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P+      F   +M   +    
Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMAKQVRRGD 705

Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719
             +         E      + L  +   R   +N     S  +  L
Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 751


>gi|311278233|ref|YP_003940464.1| exodeoxyribonuclease V, gamma subunit [Enterobacter cloacae SCF1]
 gi|308747428|gb|ADO47180.1| exodeoxyribonuclease V, gamma subunit [Enterobacter cloacae SCF1]
          Length = 1122

 Score =  108 bits (270), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 112/975 (11%), Positives = 255/975 (26%), Gaps = 125/975 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +  +   DP  P       + V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERDRLDDPFEPE-----MVLVQSTGMAQWLQMTLSKRFGIAANI--EFP 63

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
                + + F   L       P  S   +     +L+ +  + L D    L     L   
Sbjct: 64  LPASFIWDMFVRVLPDI----PKESAFNKQSMGWKLMTLLPSMLEDEAFTLL-RHYLHDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKYGMWWLLAA-DFLKIASKY 194
                   LA  +AD+ D       +W    E+   +        W       L   +  
Sbjct: 119 SDKRKLFQLASRVADLYDQYLVYRPEWLTRWENDERIDGLDAAQAWQAPLWKALVEQTAA 178

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
             + L           +       +E    G    + I G +   P   + +  +  H +
Sbjct: 179 LGQPLWHRANLYQ---RFIAALENSERPPAGLPPRVFICGISALPPVYLQALQALGKHID 235

Query: 255 GAIVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYS 295
             ++      +    I                      +        ++        Q  
Sbjct: 236 VFVLFTNPCRYYWGDIKDPTFLAKLLARQRRHHRDARELPLFRDPECAAGLFNEDGEQDV 295

Query: 296 LAKLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMR 340
              +L        D   L                     ++     I +           
Sbjct: 296 GNPMLASWGKLGRDYIYLLAGLERYEELDAFVDIEPDTLLHNLQYDILELQNSAIAGRTA 355

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADR 396
                 +K   +      + +    + + E   +   L   LD++     +   ++ AD 
Sbjct: 356 EEFARSDKKRELDPNDRSLTVHLCHSPQREVEVLHDRLLAMLDDDPTLTPRDIIVMVADI 415

Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +        +         +   IS      +        +LL+          +  L+ 
Sbjct: 416 DCYSPFIQAVFGSASGDRYLPYAISDRRARQSHPALQAFITLLSLPDSRFTSEDVLALLD 475

Query: 452 HPLA--KFGFPEKYLSRAKNALELVALRGNK--NSYDIMDLKSLVLDRIATQKNNTHVPH 507
            P+   +F   E  L   +  +    +R     ++    DL +              + +
Sbjct: 476 VPVLAARFEIDEDGLRYLRQWVNESGVRWGMDDDNVREWDLPATGQHTWRFGLTRMLLGY 535

Query: 508 WQSRLSEED------KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                  E        E + L+ + +    + L+     +++     +++ W  +    L
Sbjct: 536 AMDSQQGEWCSVLPYDESSGLIAELVGHLASLLMQLNRWRHALAQARTLAQWLPVCRDML 595

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            +  L +      L   E  +   ++  + +E             D + + +D E +  +
Sbjct: 596 NDFFLPDPDTEAALTLIE--QQWQAIIEQGVEAHYHDAVPLSLLRDELGQRLDQERISQR 653

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + I   +  R + F  + L G+N+GV+P+  +   F   +M          +  
Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRALSPLGF--DLMSQKPVRGDRSRRD 710

Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                  E        L  +   R   +N     S  +Q L+   G              
Sbjct: 711 DDRYLFLEALMSAEQKLYISYIGRSIQDNSERYPSVLVQELVDYIGQSHRLRGDESLNCD 770

Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                                   + GQ        L    +Q         P  E    
Sbjct: 771 DSEQRVKAHITHQHTRMPFDAANFRSGQEQSFAREWLAAAGQQGEAHGEFIQPLPEQPFD 830

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825
                ++++    P   + +  L+++F       PD       G   + +  +L+   + 
Sbjct: 831 ALPLEQLQRFWLHPVRAFFQMRLRVNFRLEESDIPDMEPFVLEGLTRYQLNQQLVNTLVE 890

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
           +   E  H   +        E        I      +   +  +    ++          
Sbjct: 891 QRDAEAMHRRFRAA-----GELPYGAFGDISWDEQCREMQALADRVVSLRQPA------Q 939

Query: 886 PAKMAIESIGIHLTG 900
             ++ ++  G+++TG
Sbjct: 940 SMEIDLQCDGVNITG 954


>gi|165977328|ref|YP_001652921.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165877429|gb|ABY70477.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 1114

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 86/786 (10%), Positives = 198/786 (25%), Gaps = 93/786 (11%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
           + ALL      +   +P  P      T+ V +    Q L+ +  + TG  +         
Sbjct: 13  LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 59

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134
                   T+ L   Y +  P    + + E       L RLI  +  K     + L    
Sbjct: 60  --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 115

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180
                  P     LA  +AD+ D        W              E L A+   +    
Sbjct: 116 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 174

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228
                  L+  S  W   + ++ A S                    +    E        
Sbjct: 175 -RDILANLRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 233

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281
            I + G +        ++  ++ H    +                       +  + +  
Sbjct: 234 RIFVFGISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQ 293

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                      Q     L  +    RE + +L     +         +            
Sbjct: 294 DLDALLAEQGNQ----LLAMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 349

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397
            +    +   + +    + +    +   E   +   L    + N     K   +++AD +
Sbjct: 350 LNFNNEQRFGLAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 409

Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
                   +        +  I   +S     +     +    LLN         ++  L+
Sbjct: 410 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 469

Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                         +    R       +    +    D  +  +            +   
Sbjct: 470 DVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 529

Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                        +  L   ++  +   +            + ++ +W       +    
Sbjct: 530 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 585

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623
                   +    +    L+S   ++       + +    I+II  L++ +  + +    
Sbjct: 586 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 643

Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
             +  +     L  R + F  + L G+NE  +P+  + N F   +MQ         +   
Sbjct: 644 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 701

Query: 683 QAAHDFEMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                 E     + +   +   +   +N   + S  + +LL        +  + +     
Sbjct: 702 DRYLFLEALLSAQEIFYLSYIGQSTTDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 761

Query: 740 DWTRKL 745
            ++  L
Sbjct: 762 SFSEAL 767


>gi|332088735|gb|EGI93848.1| exodeoxyribonuclease V, gamma subunit [Shigella dysenteriae 155-74]
          Length = 1106

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 111/1057 (10%), Positives = 249/1057 (23%), Gaps = 160/1057 (15%)

Query: 49   IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
            I V +    Q L+    +  G  + I      L           +L         +    
Sbjct: 19   ILVQSTGMAQWLQMTLSQKFGIAANID---FPLPASFIWDMFVRVLPEIPKESAFNKQSM 75

Query: 109  LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
              +L  L+    ++    +        L+          L+   AD+ D         E 
Sbjct: 76   SWKLMTLLPQLLDRENFTLL----RHYLTDDSDKRKLFQLSSKAADLFDQYLVYR--PEW 129

Query: 169  LHALKNEKYGM---WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            L   +                 L  A   +T  L +             +          
Sbjct: 130  LAQWETGHLVEGLGEAQAWQAPLWKALVEYTHELGQPRW-HRANLYQRFIETLESATTCP 188

Query: 226  T--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                  + I G +   P   + +  +  H    ++      +    I +           
Sbjct: 189  PGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQ 248

Query: 284  SNTTYSTHPQYSLA-------------------KLLDFLDIKREDVKRLGNVSNEMYGRS 324
               ++                             LL        D   L +         
Sbjct: 249  RRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELD 308

Query: 325  MVIS---------------KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
              +                +                 +    +    S +      + + 
Sbjct: 309  AFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQR 368

Query: 370  EAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDISAGIP 420
            E   +   L   L+E+     +   ++ AD +        +         +   IS    
Sbjct: 369  EVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRA 428

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRAKNALELVALRG 478
              +        SLL+          +  L+  P+    F   E+ L   +  +    +R 
Sbjct: 429  RQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRW 488

Query: 479  NKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL-VDHILQC 530
              +  ++ +L+       +                      S    + +  L  + +   
Sbjct: 489  GIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHL 548

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
             + L+     +        + +W  +    L    L +             +   ++ ++
Sbjct: 549  ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAA--MTLIEQQWQAIIAE 606

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
             +              D + + +D E +  +      + I   +  R + F  + L G+N
Sbjct: 607  GLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP-VNICTLMPMRSIPFKVVCLLGMN 665

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NN 707
            +GV+P+  A   F   +M          +         E     +  L  +   R   +N
Sbjct: 666  DGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDN 723

Query: 708  IPTIASRWLQRLLVLGGTDFF------------------------DNLKKRGQCYLDWTR 743
                 S  +Q L+   G   +                          +    Q Y    R
Sbjct: 724  SERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGGR 783

Query: 744  KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            +       P   +          P     P T     +++    P   + +  L+++F  
Sbjct: 784  QSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRT 843

Query: 798  HFKKDPDRTDR---GTLFHNIITELIKKRINKNTPEIN-HLMKQIIDSHFEKENLPPHID 853
               + PD       G   + I  +L+   + ++  E      +   D             
Sbjct: 844  EDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGD--LPYGAFGEIFW 901

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG---FADRIDLLKS 910
                    +++   +      Q            ++ +   G+ +TG             
Sbjct: 902  ETQCQEMQQLADRVIA---CRQPG-------QSMEIDLACNGVQITGWLPQV-----QPD 946

Query: 911  G--FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
            G              P   +  +    QL LE     A                      
Sbjct: 947  GLLRWR---------PSLLSVAQG--MQLWLEHLVYCASG-----------------GNG 978

Query: 969  FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
                 +  D +       +E++L  L +++   + G 
Sbjct: 979  ESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGM 1015


>gi|319637621|ref|ZP_07992387.1| exodeoxyribonuclease V [Neisseria mucosa C102]
 gi|317400776|gb|EFV81431.1| exodeoxyribonuclease V [Neisseria mucosa C102]
          Length = 1100

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 87/727 (11%), Positives = 188/727 (25%), Gaps = 75/727 (10%)

Query: 44  LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           LA   + V ++   + L   F    G  + +         +  +     L+       P 
Sbjct: 30  LAPEEVVVQSQGMRRYLNVFFARKLGVAANL--KFSLPAGLAWQ-LMRKLVPDVPPLSPF 86

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           S       L  L      +     +++  +    L  S +    LA  +ADI D      
Sbjct: 87  SPEVMRWRLLDLFRSEAFQTAPEYENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYR 146

Query: 164 KKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217
             W D      L  L +++    W             W  R ++  + S         + 
Sbjct: 147 PDWIDAWQAGKLLGLGDDED---WQARL---------W--RYLDDGSQSAPHRVALWEKL 192

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
            A+         + + G +   P   +L+  ++ H +  +            + +   + 
Sbjct: 193 LAQLDKSVLPQRLFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQYWGEVIDEA-QI 251

Query: 278 STNITSSNTTYSTHPQ--------YSLAKLLDFLDIKREDVKRLGNVSN----------- 318
                 ++ + + HP               L  ++ +++         +           
Sbjct: 252 LKRGDEADLSQAGHPLLASLGKQGRDFFDFLAEVETEQDIQVYEEGKDDTLLHCLQNDIQ 311

Query: 319 ----EMYGRSMVISKSFLPPDTSDMRNTDILENKI---PNIQKCFSDVALIEADNEREEA 371
                   R     +       + ++  D   N +   P+       V ++ A +   E 
Sbjct: 312 NLIMPPSERLYQQEEGEAGAQQAWVQVHDADGNPVCVEPDKLLNDGSVKIVAAHSPLREL 371

Query: 372 I----SIAIALRMSLDENKKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421
                 +++ L+ + D      A++T +          +          +   IS     
Sbjct: 372 QILKEELSLVLQNNPDWQPHDIAVLTPNIEPYSPFIEAVFGQEQAGSQALPYSISDVKLS 431

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG-----FPEKYLSRAKNALELVAL 476
                   L   L+ +    +   +  L++  L              L  A   L +   
Sbjct: 432 RRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHEAVAGLNVHWG 491

Query: 477 RGNKNSYDIMDLKSLVLDRIA-TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                     +L +                  +            V  +D        + 
Sbjct: 492 LDQTMREGKDNLFTWQQAVERLALGWMLPEGGYGMWQGVSAWHSNVNQLDVFSGFAEFIR 551

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           T             +  W +     L+ +   +         ++  ++L+    +     
Sbjct: 552 TLADMAAQWQEPADVEGWVQRCRDLLEKLFAPDTDDQYA--KQQFEQSLAKWQEEAQLAE 609

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                     I  I R +D E+       S  +     +  R L F  + L GLN+G +P
Sbjct: 610 FDGLLPCKTVIRHIRRFLDSES--QAGFLSGGITFCSMVPMRSLPFKMVCLLGLNDGDFP 667

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712
           +NT    F           +             E     R  L  +   R+  N+     
Sbjct: 668 RNTKAAVFDLIAKHPKKGDRARRDDDRY--LFLEALISAREMLYLSYIGRDIRNDAEFAP 725

Query: 713 SRWLQRL 719
           S  +  L
Sbjct: 726 SSLISEL 732


>gi|289432505|ref|YP_003462378.1| hypothetical protein DehalGT_0555 [Dehalococcoides sp. GT]
 gi|288946225|gb|ADC73922.1| conserved hypothetical protein [Dehalococcoides sp. GT]
          Length = 379

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 88/266 (33%), Gaps = 36/266 (13%)

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
             R  S+S+I Q  + P          L  +            GT  H+      +  +  
Sbjct: 1    MRPLSYSQIDQYQSCPLKYRFLYSDGLKPLEK-----GYFSFGTTLHDCAEHFFR--VKV 53

Query: 827  NTPEINHLMKQIIDSHFEKENLPP-HIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVN 884
              P     + +   SH+         I+  +R L  +I   F       ++     + V 
Sbjct: 54   PPPLSLEKLMEYYQSHWRSGGYESVEIEENYRQLGREILAEF---HRIHRADFHMPLAVE 110

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAA 943
                + ++  G+ LTG  DR+D L SG + I DYK+       E  Q   + QLSL   A
Sbjct: 111  HQYTVNLD--GVKLTGKIDRVDKLPSGELCIVDYKSNKDLFSAEYVQD--NLQLSLYQLA 166

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKID-CITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
            ++   +       V  L    L+    +     + +    A  L  +    + + +    
Sbjct: 167  VEQIWY-----LPVGELCLYHLRSNTVMRCPARSKEVIADARRLVLEVAGKIEKAI---- 217

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028
                 F +     E +    ++ HL 
Sbjct: 218  -----FPA----CENNFCPCDFAHLC 234


>gi|325107376|ref|YP_004268444.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis
           DSM 5305]
 gi|324967644|gb|ADY58422.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis
           DSM 5305]
          Length = 770

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 78/688 (11%), Positives = 195/688 (28%), Gaps = 113/688 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           ++     T +A  E+      +T  ++     + +                         
Sbjct: 62  NILAITFTNKAASEMSERLQGLTDTRNLW---VSTFHRFCANV----------------- 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +++   +  L   +        K    +    L    A+       +   I   + +   
Sbjct: 102 LRQRANVVGLQQNFTILDSADQKQAIKQVLSELDFDAAHYPP--GKILATISNAKNDLVS 159

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            +  +    E     +      +      + + L+E NA       + ++R   E+    
Sbjct: 160 ADAFNQQFEESVADHFTAV---VARVYPAYQKFLMESNAVDFDDLLLHVVRLFEENEELR 216

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    I++     +  A  R++  ++ +     V    D       W      +  
Sbjct: 217 ARYDERYQYILVDEYQDTNEAQYRIVRALSQNARNLSVT--GDPDQSIYGWRGAKIDNIL 274

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +   +          +  L+      K +   ++ +   + +              
Sbjct: 275 RFEKDFEDAK---------VIKLEQNFRSTKLILAAADSLITHNRLRKA----------- 314

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRN 397
                  ++         V L+   +   EA SIA  +R  ++E  +     A+     +
Sbjct: 315 ------KELTTDNDEGEPVELLHFPDSGTEADSIARHIRHLVEEEGRDWSDFAIFYRVNS 368

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
           L+R+++L L R  +   ++AG+          +   L  I    +  A   +V  PL   
Sbjct: 369 LSRQLELALGRHHVPYQVAAGVAFYQRAEVRDVLQYLELINNPRNRPAFMRVVNTPLRGI 428

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G   +    +      ++                    +        VP    R      
Sbjct: 429 GKTSQNRLMSYAEQHNMSY-------------------LEAAAEADKVPKMSKR------ 463

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                     L+  + +++  +  NS      I D    T  C Q +     + L     
Sbjct: 464 ------AAASLKAFSRMMSGFSLANSGSVANLIEDVVTQTDYCKQWLSNPSEQDLQRQAN 517

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            +E  + +     I +  + ++     +++  + + D + ++ +   S  + ++    ++
Sbjct: 518 VDELISAARNHDTIYDADTSLE----GFLETTSLVSDLDALEQQNNNSGKVTLMTLHAAK 573

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + + G+ + +               +  L      +Y  +    F         
Sbjct: 574 GLEFPVVYIVGVEQNLL------------PHERSLREGNPREYEEERRLFFVGITRAMQQ 621

Query: 698 IYTRSLRENN-----IPTIASRWLQRLL 720
           +Y  S R  +     +PTI S +L  + 
Sbjct: 622 LYVTSSRYRDLHGRSMPTIPSDFLSEID 649


>gi|238909773|ref|ZP_04653610.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 1123

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 106/942 (11%), Positives = 240/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L               ++               + I G +   P   R +  +  H    
Sbjct: 179 LGLPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              T+         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHTFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|322613396|gb|EFY10337.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620988|gb|EFY17846.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624051|gb|EFY20885.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628209|gb|EFY24998.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633328|gb|EFY30070.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636094|gb|EFY32802.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639431|gb|EFY36119.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322643706|gb|EFY40258.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648819|gb|EFY45266.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655188|gb|EFY51498.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657981|gb|EFY54249.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664083|gb|EFY60282.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667051|gb|EFY63223.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673100|gb|EFY69207.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677909|gb|EFY73972.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681084|gb|EFY77117.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685680|gb|EFY81674.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323194819|gb|EFZ80006.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196570|gb|EFZ81718.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323205016|gb|EFZ89999.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207782|gb|EFZ92728.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212665|gb|EFZ97482.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214851|gb|EFZ99599.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222581|gb|EGA06946.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226460|gb|EGA10668.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230660|gb|EGA14778.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234989|gb|EGA19075.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239027|gb|EGA23077.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244615|gb|EGA28621.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247230|gb|EGA31196.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253287|gb|EGA37116.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256406|gb|EGA40142.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262418|gb|EGA45974.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267486|gb|EGA50970.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269110|gb|EGA52565.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 1123

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 106/942 (11%), Positives = 242/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
           I       L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 IDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDEMLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDVERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|237729783|ref|ZP_04560264.1| exonuclease V subunit gamma [Citrobacter sp. 30_2]
 gi|226908389|gb|EEH94307.1| exonuclease V subunit gamma [Citrobacter sp. 30_2]
          Length = 1122

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 107/942 (11%), Positives = 236/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +     + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLAQKFSIAANID---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         S      +L  L+      L D          L+  
Sbjct: 63  PLPASFIWDMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDSDDFALLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSSRAADLFDQYLVYRPDWLTQWEAGRLVEGLGESQAWQAPLWKALVEYTAE 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   + +  +  H N  
Sbjct: 179 LGQPRW-HRANLYQRFIQTLENASECPQGLPSRVFICGISALPPVYLQALQALGKHINIH 237

Query: 257 IVLPGLDCHIP----TAIW---------------NTITEKSTNITSSNTTYSTHPQYSLA 297
           ++      +         W                 +     N  +     S   Q    
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEERHLPLFRDNQKAEGLFNSDGEQDVGN 297

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342
            +L        D   L +           +                +             
Sbjct: 298 PMLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHNIQSDILELESNAVAGVTLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    ++   + V      + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRRLELNDTSVTFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQSVFGSAPAERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFNIDEEGLRYLRLWVNESGIRWGIDDDNVRELELPPTGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESSQGEWQSVLPYDESSGLIAELVGHLASLLMQLNLWRRGLAQERPLEEWLPICREMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIITEGLGAEYGDAIPLSLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF----------- 728
             + F  A     + L  +   R   +N     S  +Q L+   G   +           
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELMDYIGQSHYLPGDESLTCDQ 771

Query: 729 -------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPRT 769
                          +    Q YL   ++       P              P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYLPGEQQSYAREWLPAASLSGKAHTDFVQPLPFEMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLETLQRFWAHPVRAFFQMRLRVNFRSEESEIPDTEPFTLEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           N  E      +      +    E L        + L  +I  
Sbjct: 892 NDAERLFRRFRAAGALPYGPFGEILWDTQRQEMQSLAERIIA 933


>gi|167993493|ref|ZP_02574587.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205328452|gb|EDZ15216.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248130|emb|CBG25965.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995135|gb|ACY90020.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159554|emb|CBW19073.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312914015|dbj|BAJ37989.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225674|gb|EFX50728.1| Exodeoxyribonuclease V gamma chain ; RecC [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323131352|gb|ADX18782.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332989864|gb|AEF08847.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 1123

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 104/942 (11%), Positives = 240/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +      +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMFND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|161506461|ref|YP_001573573.1| exonuclease V subunit gamma [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867808|gb|ABX24431.1| hypothetical protein SARI_04664 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1123

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 103/941 (10%), Positives = 239/941 (25%), Gaps = 113/941 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +  +   DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERDRLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPEIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALK-NEKYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLLYRPDWLTQWEAGKIVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   + +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLERATTCPPGLPSRVFICGISALPPVYLKALQALGRHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPGDNSLSFHVCHSPQREVEILHDRLLAILEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VVAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDSVPVSLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A   F   +M          +    
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAPLGF--DLMSQKPIRGDRSRRDDD 712

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF------------ 728
                E     +  L  +   R   +N     S  +Q L+   G   +            
Sbjct: 713 RYLFLEALMSAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDES 772

Query: 729 ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPRTY 770
                         +    Q YL   ++       P   +          P     P T 
Sbjct: 773 EARVKRHITRLHTRMPFDAQNYLPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPDTL 832

Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827
           +   +++    P   + +  L+++F     + PD       G   + +  +L+   + + 
Sbjct: 833 TLESLQRFWAHPVRAFFQMRLQVNFRSQENEIPDAEPFELEGLTRYQLNQQLLNTLVEEE 892

Query: 828 TPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
             E      +   +  +    E          + L  ++  
Sbjct: 893 DAERLFRRFRAAGELPYGAFGEICWDAQRQEMQQLASRVIA 933


>gi|62181504|ref|YP_217921.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129137|gb|AAX66840.1| exonuclease V, subunit [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715987|gb|EFZ07558.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 1123

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 103/915 (11%), Positives = 226/915 (24%), Gaps = 88/915 (9%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              T+         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHTFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLK 732
             + F  A     + L  +   R   +N     S  +Q L         L G +     +
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN--DPYAVYARRI 790
              +     TR            +P        +    +    K   +   P        
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
           L L+ +  F   P R                +  +    E+  L +  ++       +  
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 851 HIDIIWRHLFHKISH 865
                    F     
Sbjct: 892 DDVERLFRRFRAAGE 906


>gi|114775529|ref|ZP_01451097.1| UvrD/REP helicase family protein [Mariprofundus ferrooxydans PV-1]
 gi|114553640|gb|EAU56021.1| UvrD/REP helicase family protein [Mariprofundus ferrooxydans PV-1]
          Length = 1105

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 101/862 (11%), Positives = 216/862 (25%), Gaps = 104/862 (12%)

Query: 156  IDIIETEEKKWEDLHALKNEKYGMW--WLLAADFLKIASK---YWTERLVELNASSPVGY 210
            +  I+  E+ +  L  L  E       W +      +             +   +  +  
Sbjct: 314  LAQIDGLEESFAALMTLPAEPRFAESQWQVLESLFSLLLAADTRLQRLFEQRGEADFIEI 373

Query: 211  QIALMRAEAEHLMKG---------TKGPIIIAGSTGSIPATARLMSTVANHPNGAI---- 257
             +  MRA  +                  I++     +     RL+ ++      A     
Sbjct: 374  ALRAMRALEDEAGNPTDLLLKLDYRIHHILVDEFQDTSLLQIRLLQSLTAGWQAADGYDR 433

Query: 258  -VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
             +    D       +                        L    +   +   +   L   
Sbjct: 434  SLFMVGDPMQSIYRFRKAEVGLF----------------LLASANRAGLPEVEKLTLERN 477

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD--VALIEADNEREEAISI 374
                      ++++F      +                      V L    ++ +EA ++
Sbjct: 478  FRSAPAIVDWVNRAFATIFPDEPDILLGAVEHAAADAALDHAGVVRLSLQQDDEQEAAAV 537

Query: 375  AIALRMSL-----DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
              A+R  L         ++ A++   R     +   LT   I       +PL+       
Sbjct: 538  VEAVRQELGKRTPAGKPQRIAILARSRKHLHSIMPALTAASIAYKAIDILPLNRRPEIRQ 597

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
            + +LL A+    D  + A L++ P         +                       D +
Sbjct: 598  MRALLRALLHAADRESWAALLRGPCCGLSTQALHGLL------------------SGDAR 639

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
             ++       +        + R+    + LA  L       +  L+T    +    G LS
Sbjct: 640  PVLSTLSDETRLAGIDADARDRVRFLIRALAPSLQAAGRVPLRGLLTCAWQRMGMPGLLS 699

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
                                         E    + ++ + I E             + +
Sbjct: 700  P----------------------------EATGNIDAMLALIDELEEGGSIVFSLLDERL 731

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
             +L    ++    ++S  + +L    ++ L +D +IL GL +     +T    F    +Q
Sbjct: 732  EKLYAEPSLLAGGDESPRVELLTMHGAKGLQWDVVILPGLGKKGSNSDTPVLAFADVPVQ 791

Query: 670  SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
              ++   A +   +++                    N +  +      R           
Sbjct: 792  EGVHPLIAVRAAVRSSDAVYDLVRDVEK----KRENNELARLLYVACTRAETTLLMFGEV 847

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF-SEIKQLINDPYAVYAR 788
            + K          + L     +            +++  T S  + + ++ + P      
Sbjct: 848  SEKSGQAAAGSLLKLLLPDGIEDDCFGADRVEATQSEATTLSAKTPLLRMCSLPLLPDDL 907

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
             +       +F    +    G   H  +  + ++ I +     +      I      E L
Sbjct: 908  PVTAESETEYFWAGAEAAPVGNAMHAALQHVAERGIERWQAADSAAEVAQISRLLMAEGL 967

Query: 849  PPHIDIIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL 907
                               L     K   S E+   +    ++    G       DR  +
Sbjct: 968  SGRTLSDATARCEAALTRVLASNHAKRILSGEQSDAHCEWALSSHHGGFISHHVIDRSFI 1027

Query: 908  LKSGFVDITDYKTGDNPKK------ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
               G   I DYKT  +                 PQL   AA L          R++    
Sbjct: 1028 DADGVRWIIDYKTASHEGGDLQGFLAEESTRHAPQLQRYAAILGELE----PQREIRAAL 1083

Query: 962  YIRLKQKFKIDCITNDKKKYSA 983
            Y  +             +  SA
Sbjct: 1084 YFPMLDALCEVPSAPAIEGESA 1105


>gi|224584784|ref|YP_002638582.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469311|gb|ACN47141.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 1123

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 103/915 (11%), Positives = 226/915 (24%), Gaps = 88/915 (9%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              T+         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHTFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLK 732
             + F  A     + L  +   R   +N     S  +Q L         L G +     +
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN--DPYAVYARRI 790
              +     TR            +P        +    +    K   +   P        
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
           L L+ +  F   P R                +  +    E+  L +  ++       +  
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 851 HIDIIWRHLFHKISH 865
                    F     
Sbjct: 892 DDVERLFRRFRAAGE 906


>gi|225077204|ref|ZP_03720403.1| hypothetical protein NEIFLAOT_02259 [Neisseria flavescens
           NRL30031/H210]
 gi|224951456|gb|EEG32665.1| hypothetical protein NEIFLAOT_02259 [Neisseria flavescens
           NRL30031/H210]
          Length = 1099

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 91/737 (12%), Positives = 198/737 (26%), Gaps = 76/737 (10%)

Query: 35  RYDPLNPLL--LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTAD 92
           R    +PL   LA   + V ++   + L   F    G  + +         +  +     
Sbjct: 19  RIHQASPLDSVLAQEEVVVQSQGMRRYLNVFFARELGVAANL--KFSLPAGLAWQ-LMRK 75

Query: 93  LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL 152
           L+       P S       L  L      +     +++  +    L  S +    LA  +
Sbjct: 76  LVPDVPPLSPFSPEVMRWRLLDLFRSEVFQTAPEYENVRLKLESYLHSSASADYQLAGQM 135

Query: 153 ADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
           ADI D        W D      L  L +++    W             W  R ++  + S
Sbjct: 136 ADIFDQYLVYRPDWIDAWQAGKLLGLGDDED---WQARL---------W--RYLDDGSQS 181

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                    +  A+           + G +   P   +L+  ++ H +  +         
Sbjct: 182 APHRVALWEKLLAQLDKSVLPQRFFVFGISTIAPMYLQLLHQISKHCDVFVFALNPSSQY 241

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQ--------YSLAKLLDFLDIKREDVKRLGNVSN 318
              + +   +       ++ + + HP               L  ++ +++         +
Sbjct: 242 WGEVIDEA-QILKRGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGKDD 300

Query: 319 --------------EMYGRSMVISKSFLPPDTSDMRNTDILENKI---PNIQKCFSDVAL 361
                             R     +  +   ++ ++  D   N +   P+       V +
Sbjct: 301 TLLHCLQNDIQKLIMPSERLYQQEEGEVGVQSALVQVHDADGNPVCVEPDKLLNDGSVKI 360

Query: 362 IEADNEREEAI----SIAIALRMSLDENKKKSALITADRNLARRVK------LELTRFGI 411
           + A +   E       +++ L+ + D      A++T +                     +
Sbjct: 361 VAAHSPLRELQILKEELSLVLQNNPDWQPHDIAVLTPNIEPYSPFIEAVFGQAHAGSQAL 420

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA----KFGFPEKYLSRA 467
              IS             L   L+ +    +   +  L++  L          +  L   
Sbjct: 421 PYSISDVKLSRRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHE 480

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VD 525
             A   V    ++   D  D        +        +P   + + +        +  +D
Sbjct: 481 TVAGLNVHWGLDQTMRDGKDNLFTWQQAVERLALGWMLPEGGNGMWQGVSAWHSNVNQLD 540

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
                   + T            ++  W +     L+ +   +         ++  + L+
Sbjct: 541 VFSGFAEFVRTLADMAAQWQEPANVESWVQRCHDLLEKLFAPDTDDQYA--KQQFEQALA 598

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
               +               I  I R +D E+       S  +     +  R L F  + 
Sbjct: 599 KWQEEAQLAEFDGLLPCKTVIRHIRRFLDSES--QAGFLSGGITFCSMVPMRSLPFKMVC 656

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLR 704
           L GLN+G +P+NT    F           +             E     R  L  +   R
Sbjct: 657 LLGLNDGDFPRNTKAAVFDLIAKHPKKGDRARRDDDRY--LFLEALISARDMLYLSYIGR 714

Query: 705 E--NNIPTIASRWLQRL 719
           +  N+     S  +  L
Sbjct: 715 DIRNDAEFAPSSLISEL 731


>gi|326443255|ref|ZP_08217989.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 1198

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 73/666 (10%), Positives = 168/666 (25%), Gaps = 54/666 (8%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII----KSLGDVV---EEKFT 90
               +    V     T +A  EL         +     P      +  G+        F 
Sbjct: 57  GTGQVAPEQVLGLTFTNKAAGELAERVRTALVRAGVTDPDAIDPDRPPGEPRISTYHAFA 116

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL  + L   +    RLL  A    +    L           P   P    +   L  
Sbjct: 117 GQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAA--------PGPYPALTRSFSTLVG 168

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKY---------------GMWWLLAADFLKIASKYW 195
           +L  +   +     + E L A   E                       A   L+     +
Sbjct: 169 DLLALDAELSEHLVRPELLAAHDEELLETLASASLTNADLRRLPEAAAARRELRGLVLRY 228

Query: 196 TERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                                 AL R     L++     +++     +  A   L+S + 
Sbjct: 229 RAAKRSRELLDFGDQIALSAELALTRPAVGTLLRDEYRVVLLDEYQDTSVAQRLLLSGLF 288

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
               G  V    D       W   +  + +    +  Y      +   L           
Sbjct: 289 GQGTGHAVTAVGDPCQAIYGWRGASVANLDDFPIHFPYRDGTPAARYSL----------- 337

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                 S        ++  +          +  +   +     +    V +       EE
Sbjct: 338 ------SENRRSGGRLLQLANGLAAPLRAMHEGVEALRPAPGAERDGSVRVALLPTHAEE 391

Query: 371 AISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
              +A ++   +  +K     A++         ++  L    I +++     L      +
Sbjct: 392 IDWLADSIARLVRADKAPGEIAVLCRTATDFPEIQAALVARDIPVEVVGLSGLLHLPEVA 451

Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            L ++   +       ++  L+  P  + G  +  L   +  L +    G+ +   + + 
Sbjct: 452 DLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRDSGHDDGAGLAER 511

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
            +  ++     +  +      + +     +  +            L         +  + 
Sbjct: 512 LAAAVEGTDPAEVISLADALDAFIDPAGADDGLPFSGEARVRFAHLARELRELRRSLADP 571

Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            +    ++  T   +V L    +       E       + +            A      
Sbjct: 572 LMDVLHRVLSTTGLDVELSASPRALAARRRETLGNFLDIAAGFAALDGEASLLAFLGFLR 631

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
                +           +T+ +L   +S+ L +D + + GL  G +P + A+  + +   
Sbjct: 632 TAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLTAGSFPSDRAREAWTAHPQ 691

Query: 669 QSDLNL 674
                L
Sbjct: 692 VLPHAL 697



 Score = 53.8 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 73/267 (27%), Gaps = 37/267 (13%)

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
            G         +  +    W R L    ++    R          P   + S++ +L  DP
Sbjct: 943  GPDGPEPLTPEELRAIASWDRDLTALAQELRGARASVH--EVPLPPALTASQLMRLAADP 1000

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                AR + +    P          RGT FH  +    ++                    
Sbjct: 1001 DGF-ARELARPMPRPPQ----PAARRGTRFHAWVESRFEELPLPLLGPDEL--------P 1047

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                + P   DI        +  +F       +       V  P ++ +      + G  
Sbjct: 1048 GGDLDGPDLADIADEEDLAALKEAFERTPYARR---TPHRVESPFQITLAGR--VVRGRI 1102

Query: 903  DRIDLL--KSG------FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
            D +       G        +I D+KTG              QL++   A        +D 
Sbjct: 1103 DAVYRTTAADGPATSPARYEIVDWKTGAA------AAADPLQLAVYRLAWAEQ--HGLDP 1154

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKY 981
             +V +  ++ ++    +   +   +  
Sbjct: 1155 EEV-DAAFVFVRSGEVVRPQSLPGRAE 1180


>gi|298530047|ref|ZP_07017449.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509421|gb|EFI33325.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1142

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 83/786 (10%), Positives = 191/786 (24%), Gaps = 93/786 (11%)

Query: 181  WL---LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGP 229
            W       D L++A+        +  +           +A            ++      
Sbjct: 367  WQTLEALFDVLRLAAACLQLEFQDQGSVDFTEITTRARQALGTDEDPTDLALVLDSRIQH 426

Query: 230  IIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
            +++     +  +  +L+  +       +G       D       +            S  
Sbjct: 427  LLMDEFQDTSISQYQLLLALTAGWTPGDGRTFFAVGDPMQSIYGFREAEVGLFLQARSQG 486

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                H      +L      +   V         +           +P   S      + +
Sbjct: 487  L--DHIPLEPLRLTVNFRSQAGIVDWANQAFPRVLPEVEDQMTGSVPYSGSHAFLPPLED 544

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406
              +             +AD + E +  +++  +   ++     A++   R   +     L
Sbjct: 545  PAVQVHP-------FFDADFQPESSRIVSLVQQARQEDPGGTVAILVRSRPHLQAALPAL 597

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
             + G+        PLS       L SL  A+      +A   +++ P       +  +  
Sbjct: 598  RQSGLEYQAVEIDPLSRRPVIQDLCSLARALTHPGHNLAWLAVLRAPWCGLDLEDLAILA 657

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
            A                                 +       + +  +    L+      
Sbjct: 658  A---------------------------------DKDAFIVNRIQDQDILSSLSPQGRRR 684

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
            + +    L+ +   +  +     +    K                L +     +      
Sbjct: 685  LDRVREILLKFLQQRQRSGLRSQVESCWKAL---------GGPDCLHSQSQRRDADVFFR 735

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            L  + +E       +    +D +   + G    P       L ++   +++ L FDT+I+
Sbjct: 736  LLQQRLEH------SPHRVVDELENAVAGLYAGPDTSAGQDLQVMTIHKAKGLEFDTVII 789

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLN--LKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
             GL             ++ R         L   +   G+                T    
Sbjct: 790  PGLGRAPGSDENPLLVWMERTSPRGHTDLLMAPKTATGEDKDPVYAYIQRLMARKTSHED 849

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
               +    +R  +RL +LG T   +               L    K    +         
Sbjct: 850  GRLLYVACTRARKRLHLLGHTGLTEKGLPSKPAGGSLLESLWPAVKDEFERAAATPRDDA 909

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR--------------TDRGT 810
                 +  S  + L            L           PD                  GT
Sbjct: 910  DTREEHGASAGQTLYRLHQDW-QPPRLPAGITTPSDSRPDPGQESIVFDWAGETIRLAGT 968

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
              H  +  + ++ I+K + +    +K +         +          L  +   + L H
Sbjct: 969  CVHRWMLTMAEEGIHKWSVKKIRGLKSVFARQLMDLGMLEKSLEEGVDLVQQALENTLNH 1028

Query: 871  EEKIQ--SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928
            +         ++               + ++   DR  +  +G   I DYK       + 
Sbjct: 1029 DTGRWILGPRQRARNEYALSGLDNGQAVAVS--MDRTFVDDAGLRWIIDYKISR-HSGKD 1085

Query: 929  AQKLID 934
             Q+ +D
Sbjct: 1086 VQRFLD 1091


>gi|325686248|gb|EGD28291.1| ATP-dependent deoxyribonuclease subunit B [Lactobacillus delbrueckii
            subsp. lactis DSM 20072]
          Length = 1179

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 105/994 (10%), Positives = 244/994 (24%), Gaps = 166/994 (16%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY-PESPLSLPIS 141
                  +         +   + +    + L ++I   R++L               +  +
Sbjct: 71   SFSRLAWFFFKKADLLMPESLDDAAAAMILEQIIDKRRDELLLFKNSHANSGMIKQVYST 130

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                     +L ++++              L NE            L +  + + E + E
Sbjct: 131  ILQVHTGQLDLGNLLERAA----DPAVALDLDNET-----RDKLHDLDLIYQDFLEIVSE 181

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             + ++     I L +  A      ++    +   +         M  +A   +       
Sbjct: 182  KHFATKDELNIQLNQLLASRPDLVSQASFYVTDFSHFSIQEKMTMQLLAAFASEMTF--- 238

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEM 320
                             T   S     +    Y + K +  L                  
Sbjct: 239  --------------AFKTADGSVIEPAAGEYDYVVQKTIKDLTGYFSAHDFAW------- 277

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
              R  + S      D +         +          ++ L++AD+   EA  +A  +  
Sbjct: 278  -EREKIASPVSPARDLNQAWQGQGQPD--------LDNLQLVKADSRYAEAYFVARTIYD 328

Query: 381  SLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             +       +   ++  +           L +  I         +       +L +L   
Sbjct: 329  EVALKGCQYRDFLVLAPNLQEYETYLAPILRQNQIPFFDDLQQQMKYHPLVLLLENLGKL 388

Query: 437  IFKLNDFMAIATLVKHPLAKFGF--------PEKYLSRAKNALELVALRGNKNSYDIMDL 488
            + +  D  A+ +++K  L    +         E    R  + LE  AL            
Sbjct: 389  LQQAGDTPALLSIMKTRLLIPDWYLEGDAEAGEAAYLRDVDQLENFALAHGIKYSLWQKP 448

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                        +      W         +    L D  +  I+ L     ++  +   +
Sbjct: 449  LKDFTKAQVIALDQEQYQKWL--------DRLDKLRDFFVSKISRLARQLKSEKDSMTAV 500

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID- 607
             +     +       +     +   +   ++  +        +      +  N   +   
Sbjct: 501  KLFFDFLVKNGVSARLEAWRLKASESGDLQQAQQPEQCWNLLLSLLKDYLLVNPENFAWA 560

Query: 608  ----IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--------NEGVWP 655
                ++T                 + +      +   +  + + G         N+    
Sbjct: 561  DFFKMLTAAFSQANFATIPASLDAVTLSEYGMVQTSGYKQVFIIGAANGSLPQINDQPNF 620

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTI 711
              T     L+     +  L+ +++             +A  +  +  +  +   NN    
Sbjct: 621  LTTENLASLADFFDQEAYLEDSQQLRNLDQEYQFGNALALASDRVYISYPVINSNNDLLD 680

Query: 712  ASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------ 758
             S + +RLL L                K R +        L        Y          
Sbjct: 681  PSIYYKRLLKLVNGREYRQRDLPDTAEKDRTEFARQLLLFLTSPRASLGYLAYAEENSAQ 740

Query: 759  -------------------------------PFPPLEAQPRTY-------SFSEIKQLIN 780
                                           P    E             S S+++    
Sbjct: 741  SPLVAKLVELSRQYEEEKAEEIAEGMAYDNNPQDISEDLAERLYGKDLLSSVSQLESYYQ 800

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------- 829
            + +  +    L+L      + + +    G  FH     L+K+   KN             
Sbjct: 801  NSFEYFLNYGLRLRPR--AENELNAIQSGNYFHRTFELLLKEMQKKNIEIDKLSELDLEL 858

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK----ISHSFLEHEEK---IQSSIEKIF 882
             +  +  +I+     ++ L    +      F K    ++ S+   +++     +  E  F
Sbjct: 859  LLKQVRSKILQEPLYQQFLRDPFNEYLFKAFDKTTSKVAQSYRRKQQENKMRATYGELAF 918

Query: 883  --VNIPAKMAIES------IGIHLTGFADRIDL-LKSGFVD--ITDYKTG-DNPKKETAQ 930
                  A + +          I L G  DR+DL      V   + DYK+   +       
Sbjct: 919  GPAEKLAGLVLPLKKFAGQRKISLRGKIDRVDLFNGDQHVLGQLIDYKSSDHSFNLARFA 978

Query: 931  KLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962
              +D Q+      L+      +      +   FY
Sbjct: 979  SGVDLQMIAYLDVLEKNQDLLAGGRQFDLLGAFY 1012


>gi|294814880|ref|ZP_06773523.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|294327479|gb|EFG09122.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 1200

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 73/666 (10%), Positives = 168/666 (25%), Gaps = 54/666 (8%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII----KSLGDVV---EEKFT 90
               +    V     T +A  EL         +     P      +  G+        F 
Sbjct: 59  GTGQVAPEQVLGLTFTNKAAGELAERVRTALVRAGVTDPDAIDPDRPPGEPRISTYHAFA 118

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL  + L   +    RLL  A    +    L           P   P    +   L  
Sbjct: 119 GQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAA--------PGPYPALTRSFSTLVG 170

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKY---------------GMWWLLAADFLKIASKYW 195
           +L  +   +     + E L A   E                       A   L+     +
Sbjct: 171 DLLALDAELSEHLVRPELLAAHDEELLETLASASLTNADLRRLPEAAAARRELRGLVLRY 230

Query: 196 TERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                                 AL R     L++     +++     +  A   L+S + 
Sbjct: 231 RAAKRSRELLDFGDQIALSAELALTRPAVGTLLRDEYRVVLLDEYQDTSVAQRLLLSGLF 290

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
               G  V    D       W   +  + +    +  Y      +   L           
Sbjct: 291 GQGTGHAVTAVGDPCQAIYGWRGASVANLDDFPIHFPYRDGTPAARYSL----------- 339

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                 S        ++  +          +  +   +     +    V +       EE
Sbjct: 340 ------SENRRSGGRLLQLANGLAAPLRAMHEGVEALRPAPGAERDGSVRVALLPTHAEE 393

Query: 371 AISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
              +A ++   +  +K     A++         ++  L    I +++     L      +
Sbjct: 394 IDWLADSIARLVRADKAPGEIAVLCRTATDFPEIQAALVARDIPVEVVGLSGLLHLPEVA 453

Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            L ++   +       ++  L+  P  + G  +  L   +  L +    G+ +   + + 
Sbjct: 454 DLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRDSGHDDGAGLAER 513

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
            +  ++     +  +      + +     +  +            L         +  + 
Sbjct: 514 LAAAVEGTDPAEVISLADALDAFIDPAGADDGLPFSGEARVRFAHLARELRELRRSLADP 573

Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            +    ++  T   +V L    +       E       + +            A      
Sbjct: 574 LMDVLHRVLSTTGLDVELSASPRALAARRRETLGNFLDIAAGFAALDGEASLLAFLGFLR 633

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
                +           +T+ +L   +S+ L +D + + GL  G +P + A+  + +   
Sbjct: 634 TAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLTAGSFPSDRAREAWTAHPQ 693

Query: 669 QSDLNL 674
                L
Sbjct: 694 VLPHAL 699



 Score = 53.8 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 73/267 (27%), Gaps = 37/267 (13%)

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
            G         +  +    W R L    ++    R          P   + S++ +L  DP
Sbjct: 945  GPDGPEPLTPEELRAIASWDRDLTALAQELRGARASVH--EVPLPPALTASQLMRLAADP 1002

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                AR + +    P          RGT FH  +    ++                    
Sbjct: 1003 DGF-ARELARPMPRPPQ----PAARRGTRFHAWVESRFEELPLPLLGPDEL--------P 1049

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                + P   DI        +  +F       +       V  P ++ +      + G  
Sbjct: 1050 GGDLDGPDLADIADEEDLAALKEAFERTPYARR---TPHRVESPFQITLAGR--VVRGRI 1104

Query: 903  DRIDLL--KSG------FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
            D +       G        +I D+KTG              QL++   A        +D 
Sbjct: 1105 DAVYRTTAADGPATSPARYEIVDWKTGAA------AAADPLQLAVYRLAWAEQ--HGLDP 1156

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKY 981
             +V +  ++ ++    +   +   +  
Sbjct: 1157 EEV-DAAFVFVRSGEVVRPQSLPGRAE 1182


>gi|239944121|ref|ZP_04696058.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           15998]
          Length = 423

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 95/384 (24%), Gaps = 60/384 (15%)

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
               +   + R   ++     A     +             L+ T      +     SR+
Sbjct: 7   APAEEADRIGRDGLAEPLTPGALLAEERRLFYVAATRARDRLVVTAVKAPADDGDQPSRF 66

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY--------------------- 754
           L  L V           +R         +L  TT  P                       
Sbjct: 67  LTELGV--EPRDVTGRPRRPLAVAALVAELRATTVDPAASDALREAAAHRLARLAALTDD 124

Query: 755 --------------------KRPKPFPPLEAQPRTYSFSEIKQLIN-DPYAVYARRILKL 793
                                R         Q  + S S + QL N      +  R    
Sbjct: 125 EGQPLVPAAHPYRWWGLEEPTRSAVPLRDRDQALSLSPSALDQLANTCTLQWFLGR---- 180

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
             +            G + H ++ + +         ++       + +    +       
Sbjct: 181 -EVKADAPATAAQGFGNVVH-VLADEVASGRTPADLDVLMERLDSVWNGLAFDAPWKSEQ 238

Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSG 911
              +         FL      +             + +E+    + + G  DR++    G
Sbjct: 239 EKDQAR--AALERFLHWHVLDRGGRTPTASEHDFDVTLEAGEYAVRIRGSMDRVEEDAEG 296

Query: 912 FVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQ 967
              + D+KTG   P K+       PQL++   A++ G+  ++      +      ++L+Q
Sbjct: 297 RAYVVDFKTGKGAPTKDEVAAH--PQLAVYQLAVREGAVDEVFDGRRPEPGGAELVQLRQ 354

Query: 968 KFKIDCITNDKKKYSADELSEKSL 991
                   +   K  A E      
Sbjct: 355 PAPKKEGGDAFPKVQAQEPLAGEW 378


>gi|30250100|ref|NP_842170.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718]
 gi|30139207|emb|CAD86077.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718]
          Length = 1155

 Score =  108 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 88/793 (11%), Positives = 210/793 (26%), Gaps = 68/793 (8%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIA 233
                  LK+A+ Y      +          +A +RA             +      +++ 
Sbjct: 375  QALFSLLKVAAGYLLLVFRQHGQVDFTEIAMAAVRALGEPEMPTDLALALDYRIHHLLVD 434

Query: 234  GSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
                +  + A L+  +       +G  +    D       +    E    +   ++ Y  
Sbjct: 435  EFQDTSSSQAELLQRLTAGWQTGDGRTLFLVGDPMQSIYRFRQA-EVGLFLDIRDSGYFG 493

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
              Q    +    L +       +    N  + R +  + S      S   +         
Sbjct: 494  QIQMRFLR----LSVNFRSQSGIVEWVNRYFPRILPDTDSVSTGAVSYASSVAFHAASSG 549

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRVKLELTRF 409
               + +  +      ++R EA  +   +  +       + A++  +R+    + + L R 
Sbjct: 550  EAVRIYPYLQ----KDDRAEAEQVGAIVAQARAAQPDGRIAVLVRNRSHLASIVVHLRRK 605

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            G+         L+  +    L +L  A+    D +A   L++ P       + +      
Sbjct: 606  GLRFQAVEIEQLAQRVVIRDLMALTRALVHPADRIAWLALLRAPFCGLSLQDLHTVANT- 664

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                            + + SL     +   +          L   ++ L +     + +
Sbjct: 665  ------------LPQHVLIDSLRACAGSGVLSEEGGQRVNRVLPILERALMLYDRMSLRR 712

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
            C+  +        S      ++D  ++    L+N  +  +R       E   +  +    
Sbjct: 713  CVEGIWVSLGGPASVQNETDLAD-AEVYFQLLENFDVTGYRPDIQELDERLVRLFALPDV 771

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
               ++   +  +  + ++  T ++ G    P+ ++   L  L   +        L+   +
Sbjct: 772  AADDSLQLMTLHKAKGLEFDTVILPGLGKSPRRDQEKLLNWLEFHDQ--SQHPGLLCAPI 829

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
            +     KN      LS   +           + +A   +      +H +           
Sbjct: 830  SAAGSDKNPISAYILSEEKKRTA--------LEEARLLYVAVTRAKHNL------HLLGH 875

Query: 710  TIASRWLQRLLVLGGTDF-FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                  +Q    L   +                 R  +                L    R
Sbjct: 876  LRIDPDMQENDALKPPEDTLLARLWPAVAADFLARSREAAIGDLPASNVHTGLQLVGMVR 935

Query: 769  TYSFSEIKQLINDPYAVYARRILKL--DFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
              S  +   L                 + +            G + H ++  +    +  
Sbjct: 936  LVSGWQPPPLPKAVAVAMHANEAGTTEEPVDFDWAGEPARLVGVVVHCLLHRIGLIGVEN 995

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS-FLEHEEKIQ---SSIEKIF 882
               +    +K    S   +  + P           +   +  +E E       +  ++  
Sbjct: 996  VDHQDLEALKLAGRSLLIQSGITPRHLEKAVQQVARALRTMCVEDETGRWILSNRHQEAR 1055

Query: 883  VNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK------ETAQKLI 933
                  +         I ++   DR  +  +G   I DYKTG +         +  Q   
Sbjct: 1056 CEWALSVPTAIAAGHSISVS-IIDRTFVDAAGVRWIIDYKTGSHTGGSLEEFLDREQLRY 1114

Query: 934  DPQLSLEAAALKA 946
             PQL   A  L+ 
Sbjct: 1115 RPQLDRYAQVLQR 1127


>gi|15642320|ref|NP_231953.1| exonuclease V subunit gamma [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121586153|ref|ZP_01675944.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae 2740-80]
 gi|153817888|ref|ZP_01970555.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae NCTC 8457]
 gi|153821490|ref|ZP_01974157.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae B33]
 gi|227082446|ref|YP_002810997.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae M66-2]
 gi|229507608|ref|ZP_04397113.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae BX 330286]
 gi|229512196|ref|ZP_04401675.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae B33]
 gi|229519332|ref|ZP_04408775.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae RC9]
 gi|229607114|ref|YP_002877762.1| exonuclease V subunit gamma [Vibrio cholerae MJ-1236]
 gi|254849445|ref|ZP_05238795.1| exonuclease V subunit gamma [Vibrio cholerae MO10]
 gi|255746994|ref|ZP_05420939.1| exodeoxyribonuclease V gamma chain [Vibrio cholera CIRS 101]
 gi|262161464|ref|ZP_06030574.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae INDRE 91/1]
 gi|298500311|ref|ZP_07010116.1| exodeoxyribonuclease V, gamma subunit [Vibrio cholerae MAK 757]
 gi|9656888|gb|AAF95466.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549565|gb|EAX59589.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae 2740-80]
 gi|126511596|gb|EAZ74190.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae NCTC 8457]
 gi|126520983|gb|EAZ78206.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae B33]
 gi|227010334|gb|ACP06546.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae M66-2]
 gi|229344021|gb|EEO08996.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae RC9]
 gi|229352161|gb|EEO17102.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae B33]
 gi|229355113|gb|EEO20034.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae BX 330286]
 gi|229369769|gb|ACQ60192.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae MJ-1236]
 gi|254845150|gb|EET23564.1| exonuclease V subunit gamma [Vibrio cholerae MO10]
 gi|255735396|gb|EET90796.1| exodeoxyribonuclease V gamma chain [Vibrio cholera CIRS 101]
 gi|262028775|gb|EEY47429.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae INDRE 91/1]
 gi|297541004|gb|EFH77058.1| exodeoxyribonuclease V, gamma subunit [Vibrio cholerae MAK 757]
          Length = 1148

 Score =  108 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 112/985 (11%), Positives = 239/985 (24%), Gaps = 133/985 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRTEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W       +    Y      
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEDVVEIADQHPWQPIL--WRELYAY--THKQ 179

Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             +           +   A  +         + I G +   P     +  +  H +  ++
Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ------------------------- 293
           L     H    I +                    Q                         
Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQVTIGSEVSPLKGDVENYLQESMHLS 299

Query: 294 -YSLAKLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342
                 LL  +     D   L   +++                 I    L          
Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                  P+I      + +    +   E   +   L    + +     +   ++  D N 
Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         I   IS       +   +    LL           +  L++ P
Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479

Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496
             +A+F   E+  + AK  +E   +R   NS    +                + L+   +
Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +     +         + + ++  L   +   +  L   ++    T        W   
Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L  +    +L +L  ++ + G     +      ++T  + G 
Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAVSPAIIRQVLTNKLSGT 654

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  ++
Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731
             +          + +    L  +   R   +N   + S  +  LL     +     D  
Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772

Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762
            +           L                     +     R +             +  
Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819
             + P      E+++    P   + +R LK+     +   + D      G   + +  EL
Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           ++  +          +          +   P        L      +    E+      +
Sbjct: 893 VENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952

Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900
            +       + +    +   + L G
Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|293607025|ref|ZP_06689369.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553]
 gi|292814622|gb|EFF73759.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553]
          Length = 1149

 Score =  108 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 90/774 (11%), Positives = 184/774 (23%), Gaps = 60/774 (7%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239
            L +A      R  +      +        A                +   ++I     + 
Sbjct: 355  LALAVAQLRLRFADKGEVDFIEIAQRAAAALGSADDPGELLLKLDASIRHLLIDEFQDTS 414

Query: 240  PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
                 L+ T+       +G  +    D       +           +        P +  
Sbjct: 415  QTQLDLLRTLTLGWQAGDGRSLFLVGDPMQSIYRFRKAEVGLFLEVADIGVGELTPDFLN 474

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
                        +       +  +  RS   + +     ++   +         +     
Sbjct: 475  LTDNFRSQAGIVEWVNQSFAN-LLPKRSDAAAGAIAYSPSTAFHDALPEAAVRFHPAWSR 533

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
            +     E   E      +  AL       K   A++   R+    +   L + GI     
Sbjct: 534  AGGTPAEEQAEDIAVGLVRQALID-HKGAKHPVAILVRARSHLGNLTRRLAQEGIRCRAV 592

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
              +PL+     + L  L+ A+    D MA  ++++ P                 L     
Sbjct: 593  DLVPLALRPVVADLVQLVRALSHPADRMAWLSVLRAPYCGLTLTSLQ------RLFGDDH 646

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ-CITPLV 535
                       L+       A   +      + S  +  D   A  L+       +  + 
Sbjct: 647  ITPVPVLLERALRMTPATAPAVVSSAPQGSLFDSAPATPDTPSAQALLSADEFERLRQVA 706

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                +K +  G +  + W +     L             L    + ++L  L  ++   G
Sbjct: 707  AVLLDKRNASGAMPFAAWVESLWRRL-----GGPALYAGLSVANDAESLFQLVERLAPHG 761

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
            +   A     I  +             E    + I+   +S+ L F+T+IL GL+     
Sbjct: 762  AIDPAALDAGISRLFA-----APDAADEDEGAVEIMTMHKSKGLQFETVILYGLHRAPRG 816

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIG---QAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
                   F     +                 + +              R L         
Sbjct: 817  DQAPLVRFEQSGGRVLFGPVKPRAEAEADPISRYLGAREARRASYEIDRLLYVAATRARK 876

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
               L   + +                      L         ++ +P      + +    
Sbjct: 877  RLHLVGHVSIDEASGQVKTPPSASLLGRLWPCLPTPQPPAQDQQAEPDAVDAPEWQGEPL 936

Query: 773  SEIKQLINDPYAV-----------YARRILKLDFIPHFKKDPDR---TDRGTLFHNIITE 818
              +        A             A R    D   H     +       GTL H  +  
Sbjct: 937  RRVATEGLAQLARQSNVSISAGFGTAERGAWGDGSEHPAWQLEAGYDAAIGTLAHAWLAR 996

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI---- 874
            + +   +             +     +  +P            +   + L  E  +    
Sbjct: 997  IGQDGTHAWPAPALADRLPAMRRQLTRAGIPASQADDAAQAVLETLQATLADERGLWLLS 1056

Query: 875  QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928
            QS   + +  I A   +  I + L+         + G   I DYKTG     E+
Sbjct: 1057 QSGARREWPLIDAAGKVSVIDLALS--------TEDG-WLIVDYKTGRPHPGES 1101


>gi|300361737|ref|ZP_07057914.1| ATP-dependent exonuclease subunit B [Lactobacillus gasseri JV-V03]
 gi|300354356|gb|EFJ70227.1| ATP-dependent exonuclease subunit B [Lactobacillus gasseri JV-V03]
          Length = 1158

 Score =  108 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 78/717 (10%), Positives = 182/717 (25%), Gaps = 114/717 (15%)

Query: 359  VALIEADNEREEAISIAIALRMSLD---ENKKKSALITADRNLARRVKL-ELTRFGINID 414
            +  ++AD+   EA  +A  +   +       +   ++  + +         L +  I   
Sbjct: 303  LQPVKADSRYAEAYFVARTIYQQVALNHYRYQDFLVLAPNLSEYETYLTPILRQNNIPFF 362

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALE 472
                  +        + +L     +      +  L+K  L   ++           + LE
Sbjct: 363  NDLQKEMKYHPLVVAVENLQQIFKRDFQTDNVIALMKTQLFIPEWYKSVARYQNDVDLLE 422

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL-LVDHILQCI 531
               L                   +    +   +   +S    E+ E      +  + +  
Sbjct: 423  NFVLAHGIKGSLWN-------KPLKNFVDAEVIALDKSEQEVEELERLRQYFISILSKFF 475

Query: 532  TPLVTYKTNKNSTCGNLSIS--DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
              +   K  +       +    +     +   +    D          E+   TL+ L  
Sbjct: 476  EEIEAEKDPQAGVTIFWNFLIKNRVAKRLEAWRKEANDAGDLQLAQQPEQVWSTLNDLLK 535

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
              +      + +  ++ D++                  + I      +   +  + + G 
Sbjct: 536  DYLLVAK--EFSLEQFFDLLISGFSEANFSQIPSTLDAVNISEMGMVQGQGYKQVFIIGA 593

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYIGQAAHDF---EMANGTRHLI 698
                 P+      F S      LN        L+  +K      +      ++  +  + 
Sbjct: 594  TSSNLPQIEKIPGFFSSENLEQLNDGNNTSGYLEDQQKINNLDQNYQFGNALSLASDKIY 653

Query: 699  YTRSL-RENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTK----- 750
             +  +    N     S + ++LL L         +L       L +    + +       
Sbjct: 654  ISYPVINTANERLEPSIFYKQLLRLTQAEEFSQHDLPNSAGDLLTFMTNPEASLGYLTYL 713

Query: 751  ----------------------------------QPHYKRPKPFPPLEAQPRTYSFSEIK 776
                                               P    PK    L       S S+++
Sbjct: 714  KSKRAVKVDSILEMTEQKIGEVAQNVLEGSNFKNIPENLSPKLAQELYGDRIETSVSQLE 773

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI----- 831
                + +  +    L L     F+ + D    G  +H     L+KK   KN         
Sbjct: 774  TYYQNSFEYFLNYGLHLKKR--FENELDVIQAGNYYHETFDYLVKKIKEKNLNFADLTDS 831

Query: 832  -NHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS--IEKIFV 883
                +   +    ++     + L    +    H   + + +   +     +       + 
Sbjct: 832  KLTELLIEVREELKEKGRYRQLLNDPFNKYLFHKLDQTTSNVAHYWHSNVNKTTFRPQYS 891

Query: 884  NIPAK--MAIESIG------------IHLTGFADRIDLLK-SGFVD--ITDYKTGDNPKK 926
             +       +  +             + L G  DR+DL K +  V   + DYK+      
Sbjct: 892  ELSFGKNQKVTGLSYSWKDENNKKKIVDLRGKMDRVDLAKVNDRVLGEVIDYKS----SA 947

Query: 927  ETAQKLI-----DPQLSLEAAALKAGS--FSQIDCRKVANLFYIRLKQKFKIDCITN 976
            +     +       Q+      LK  +  F+Q     V   FY  +    +      
Sbjct: 948  KKFDLGLFANGISMQMISYLEVLKKNNKFFAQGKNLDVLGAFYQNITSSLERLSSDK 1004


>gi|294102625|ref|YP_003554483.1| hypothetical protein Amico_1643 [Aminobacterium colombiense DSM
           12261]
 gi|293617605|gb|ADE57759.1| hypothetical protein Amico_1643 [Aminobacterium colombiense DSM
           12261]
          Length = 977

 Score =  108 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 79/608 (12%), Positives = 160/608 (26%), Gaps = 76/608 (12%)

Query: 362 IEADNEREEAISIAIALRMS--------------LDENKKKSALITADRNLARRVKLELT 407
           I A + R E  ++A  L +                +   +    +  D  L    +  L 
Sbjct: 276 IVAGSPRMEMETLARELVLWKNKKGYLSGQEILPAETPWQNIG-MVFDAPLLPLAEEVLQ 334

Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
           R+ I   I+ G+ +  T    I   + NA            +++ P              
Sbjct: 335 RYRIPYSINEGLTVGQTALWDIARRIWNAGEHGWPLGETWDILREPCLAGRE-------- 386

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
                           DI  L                      ++         L V  I
Sbjct: 387 ---------IATSPPADIFTLNEKGWIGFLEHAAPERGLDSFKKMC--------LFVKTI 429

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            +  TP+       +    N S      L             R    L   E        
Sbjct: 430 KKGGTPVEILSALYSLAAENPSWGKELSLWAMDHPEFDESIRRLQAALRETEHKVESLGE 489

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
               I     ++ +  E +  +       T+         L +       L      I+ 
Sbjct: 490 LQDRIGPAGQVRFSGSEAVSFLHHWTSMATIWLPPAIKGALSLFIGTPPVLEKNSLWIMP 549

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLN---------LKTAEKYIGQAAHDFEMANGTRHLI 698
            +   +WP   +++  L    +  L+         L   ++   Q    F         +
Sbjct: 550 NITASIWPGKMSESSLLPDRHKLALHDLTGTERGHLPLLKEKRDQREALFRRLVACGEDL 609

Query: 699 Y---TRSLRENNIPTIASRWL-----------QRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
               + S      P   S +L              +          L +  +  +     
Sbjct: 610 LILSSPSTDALGKPLPPSPFLGKGVSENWISFPDDMAPLERSLSHLLPQNEETMVQHVEI 669

Query: 745 LDYTTKQPHYKRPKPF-PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
            +  +      R  P       +P     S +    + P+      +LK++     +   
Sbjct: 670 GEDASPYGGILRELPTFRGDAPEPLKGHLSALDDYESCPFRFVNLNVLKIE--EPAEPGL 727

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
           D    G+  H +   + +      T     L+ +       +E+ P  + +       ++
Sbjct: 728 DVRKCGSTLHLLWERVWQAYEQ--TSRPLSLLARQYWEETLEESYPELLRVPQLARHKEL 785

Query: 864 SHSFLEHEEKIQ-----SSIEKIFVNIPAKMAIESI---GIHLTGFADRIDLLKSGFVDI 915
               +     +Q     + +  + +    ++ +  +   G+  TG ADRI+ L  G + I
Sbjct: 786 LLQQVTGLADLQQSMENNGLAGLRLKQFRELDLPILIVDGVSFTGKADRIEYLHDGRILI 845

Query: 916 TDYKTGDN 923
            DYK G +
Sbjct: 846 FDYKLGKS 853


>gi|303249687|ref|ZP_07335892.1| exodeoxyribonuclease V gamma chain [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253574|ref|ZP_07535442.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651499|gb|EFL81650.1| exodeoxyribonuclease V gamma chain [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306858954|gb|EFM90999.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 1114

 Score =  108 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 86/786 (10%), Positives = 198/786 (25%), Gaps = 93/786 (11%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
           + ALL      +   +P  P      T+ V +    Q L+ +  + TG  +         
Sbjct: 13  LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 59

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134
                   T+ L   Y +  P    + + E       L RLI  +  K     + L    
Sbjct: 60  --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 115

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180
                  P     LA  +AD+ D        W              E L A+   +    
Sbjct: 116 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 174

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228
                  L+  S  W   + ++ A S                    +    E        
Sbjct: 175 -RDILANLRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 233

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281
            I + G +        ++  ++ H    +                       +  + +  
Sbjct: 234 RIFVFGISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQ 293

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                      Q     L  +    RE + +L     +         +            
Sbjct: 294 DLDALLAEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 349

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397
            +    +   + +    + +    +   E   +   L    + N     K   +++AD +
Sbjct: 350 LNFNNEQRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 409

Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
                   +        +  I   +S     +     +    LLN         ++  L+
Sbjct: 410 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 469

Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                         +    R       +    +    D  +  +            +   
Sbjct: 470 DVKALRERFNLQERDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 529

Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                        +  L   ++  +   +            + ++ +W       +    
Sbjct: 530 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 585

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623
                   +    +    L+S   ++       + +    I+II  L++ +  + +    
Sbjct: 586 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 643

Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
             +  +     L  R + F  + L G+NE  +P+  + N F   +MQ         +   
Sbjct: 644 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 701

Query: 683 QAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                 E     + +   +       +N   + S  + +LL        +  + +     
Sbjct: 702 DRYLFLEALLSAQEIFYLSYIGQSATDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 761

Query: 740 DWTRKL 745
           +++  L
Sbjct: 762 NFSEAL 767


>gi|218532781|ref|YP_002423597.1| double-strand break repair helicase AddA [Methylobacterium
            chloromethanicum CM4]
 gi|218525084|gb|ACK85669.1| double-strand break repair helicase AddA [Methylobacterium
            chloromethanicum CM4]
          Length = 1147

 Score =  108 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 91/843 (10%), Positives = 204/843 (24%), Gaps = 68/843 (8%)

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAA 185
            + +     PL   +  A A+     L  +   I    E +   L AL  +          
Sbjct: 321  LDEQARLIPLFDALRAARALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIH---KTL 377

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            D L      W    ++      +           +            A   G+   T   
Sbjct: 378  DLLSRVGASWVLYKLDRGVDHVLV--DEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTR 435

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
               V +         G D              +          S    +  A  +     
Sbjct: 436  F-AVGDPKQSIYSFQGADPREFELTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVD 494

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                V       +   G    +  S        +    I E         ++  A ++A 
Sbjct: 495  AVFGVPDHFAGLSFDAGAPGTVHASARAGVPGAVELWGIEEPAEAEEPDAWA--APVDAP 552

Query: 366  NEREEAISIAIALRMSLDEN-------------KKKSALITADRNLARRVKLELTRFGIN 412
                 AI +A  +  ++                     L+         V   +   G+ 
Sbjct: 553  EPNAPAIVVARRIARAVKTWTTKGDACGRIWRPGDVLILVRKRSAAFEEVIRAMKGLGVP 612

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            +     + ++  +    L ++  A     D + +AT +K PL      +     A+    
Sbjct: 613  VAGQDRLEVAGHIAVLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFA 672

Query: 473  LVALRGNKNSYDIMDLKS----LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                          D  +      L              + + L       + L+     
Sbjct: 673  ETLEDALTRHAQAGDGAAIRGLAALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGG 732

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
            +    +  +                          +       +        G ++    
Sbjct: 733  EAGDAIDVFLAQAADAEN-----------GGDAPCLDAFLADYIVRPGRGRSGLSVKRDL 781

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                     +  +  + ++    ++              L +  T +  L          
Sbjct: 782  ESGRNEVRVMTVHGAKGLEAPVVVVIDGCEPLGRNDPPLLGLDSTADGPLPP-------- 833

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
                VW     ++   +   +  L  +  E++         M     HL+          
Sbjct: 834  ----VWTGGRTQDCAATLAARFALQARAREEHNRL--LYVAMTRAADHLVIAPYRGATRE 887

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL-EAQP 767
               +   + R+ +  G    + ++        W      +          P P +     
Sbjct: 888  TPASWCEMVRIGLERGLGAGEAVETEHGPITIWRDGSTASLAAAAADTAPPEPEVVPDWL 947

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             + +  E +       +                 D +   RG L H+++  L +    + 
Sbjct: 948  FSAAAPEAEAAPPLSPSGALGAADGQRQPRRRLGDAEARRRGALVHSLLEHLPRIEPARR 1007

Query: 828  TPEINHLMKQ---IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                +   +     ++    K+ +   + +I       +       E             
Sbjct: 1008 AEAADRFARARAPTLEEAKRKDLVRAVLRLIEAPDLAPLFSDQARAEVA----------- 1056

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-AQKLIDPQLSLEAAA 943
            +  ++ +E I   +TG  DR+ +++ G V + D+KTG  P  +    +    Q+SL A  
Sbjct: 1057 LSGRIVVEGIERDVTGRIDRL-VVEDGRVILCDFKTGRPPADDAPLPEREAAQVSLYARL 1115

Query: 944  LKA 946
              A
Sbjct: 1116 AAA 1118


>gi|302558546|ref|ZP_07310888.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302476164|gb|EFL39257.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 536

 Score =  108 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 62/447 (13%), Positives = 115/447 (25%), Gaps = 29/447 (6%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TLVE+             + +   ++RA  ELR       G  +   P   +        
Sbjct: 95  TLVESVAARIARGGDPERILVLTFSRRAAVELRDRMALRIG--AAHAPQATTFHSFCYAL 152

Query: 89  FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
             A  D  L       +S  ++ + +  L+    +        L          +     
Sbjct: 153 IRAHQDSDLFVEPLRLLSGPEQDVTVRELLAGQVDLER---LGLAHVRWPDELRACLTTR 209

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             A  +  ++            L A         W  A+ FL         + V   A  
Sbjct: 210 GFADEVRAVLARSRELGLGPGALDAFARRIGRPDWRAASAFLAEYLDVLDLQGVLDYAEL 269

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                +   R E    +      + +     + PA  RL+  +A    G  ++   D   
Sbjct: 270 VHRAVLLARRPEIAGQLAARYDAVYVDEYQDTDPAQVRLLHALAG---GRTLVAFGDPDQ 326

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               +                 +          ++ L   R     L   +  +  R   
Sbjct: 327 SIYAFRGADVGGILEFPHAFPRAD----GRPAPVEVLRTSRRSGAALLEATRRVTRR--- 379

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
                +P                P+     ++V          E  +IA  LR +  E+ 
Sbjct: 380 -----MPLPRLPAEKVRAHRELTPHRDGGRAEV--YTYPTSGTELDNIADILRRAHLEDG 432

Query: 387 ----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441
               + + L+ A       V+  LT  G+ +D+     PL      + L + L A+    
Sbjct: 433 VPWNEMAVLVRAGARTLPTVRRALTSAGVPVDVDGDDLPLRHEPAVAPLLTALRAVAAAE 492

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAK 468
                 T      A      +      
Sbjct: 493 ADGPADTGTDAAAAPCWLATETALTLL 519


>gi|307246818|ref|ZP_07528884.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307255801|ref|ZP_07537603.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307260253|ref|ZP_07541961.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852289|gb|EFM84528.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306861264|gb|EFM93256.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865700|gb|EFM97580.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 1114

 Score =  108 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 87/786 (11%), Positives = 199/786 (25%), Gaps = 93/786 (11%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
           + ALL      +   +P  P      T+ V +    Q L+ +  + TG  +         
Sbjct: 13  LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 59

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134
                   T+ L   Y +  P    + + E       L RLI  +  K     + L    
Sbjct: 60  --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 115

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180
                  P     LA  +AD+ D        W              E L A+   +    
Sbjct: 116 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 174

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228
                  L+  S  W   + ++ A S                    +    E        
Sbjct: 175 -RDILANLRWQSMLWNALIEDIKADSGEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 233

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281
            I + G +        ++  ++ H    +          T            +  + +  
Sbjct: 234 RIFVFGISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWTESVEDKTLEKLALKRQLSQQ 293

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                      Q     L  +    RE + +L     +         +            
Sbjct: 294 DLDALLAEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 349

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397
            +    +   + +    + +    +   E   +   L    + N     K   +++AD +
Sbjct: 350 LNFNNERRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 409

Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
                   +        +  I   +S     +     +    LLN         ++  L+
Sbjct: 410 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 469

Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                         +    R       +    +    D  +  +            +   
Sbjct: 470 DVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 529

Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                        +  L   ++  +   +            + ++ +W       +    
Sbjct: 530 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 585

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623
                   +    +    L+S   ++       + +    I+II  L++ +  + +    
Sbjct: 586 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 643

Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
             +  +     L  R + F  + L G+NE  +P+  + N F   +MQ         +   
Sbjct: 644 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 701

Query: 683 QAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                 E     + +   +       +N   + S  + +LL        +  + +     
Sbjct: 702 DRYLFLEALLSAQEIFYLSYIGQSATDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 761

Query: 740 DWTRKL 745
           +++  L
Sbjct: 762 NFSEAL 767


>gi|147673707|ref|YP_001217829.1| exonuclease V subunit gamma [Vibrio cholerae O395]
 gi|262168314|ref|ZP_06036011.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae RC27]
 gi|146315590|gb|ABQ20129.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae O395]
 gi|227014218|gb|ACP10428.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae O395]
 gi|262023206|gb|EEY41910.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae RC27]
          Length = 1148

 Score =  108 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 113/985 (11%), Positives = 241/985 (24%), Gaps = 133/985 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W       +    Y      
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179

Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             +           +   A  +         + I G +   P     +  +  H +  ++
Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ------------------------- 293
           L     H    I +               +    Q                         
Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTVGSEVSPLKGDVENYLQESMHLS 299

Query: 294 -YSLAKLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342
                 LL  +     D   L   +++                 I    L          
Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                  P+I      + +    +   E   +   L    + +     +   ++  D N 
Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         I   IS       +   +    LL           +  L++ P
Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479

Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496
             +A+F   E+  + AK  +E   +R   NS    +                + L+   +
Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +     +         + + ++  L   +   +  L   ++    T        W   
Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVETLSDLRSQLAQTQSMEQWRYWLNE 599

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L  +    +L +L  ++ + G     +      ++T  + G 
Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  ++
Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731
             +          + +    L  +   R   +N   + S  +  LL     +     D  
Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772

Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762
            +           L                     +     R +             +  
Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819
             + P      E+++    P A + +R LK+     +   + D      G   + +  EL
Sbjct: 833 EVSWPMELDLVELQRFWRLPVAYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           ++  +          +          +   P        L      +    E+      +
Sbjct: 893 VENLLACCDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952

Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900
            +       + +    +   + L G
Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|307257990|ref|ZP_07539743.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306863537|gb|EFM95467.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 1150

 Score =  108 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 86/786 (10%), Positives = 198/786 (25%), Gaps = 93/786 (11%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
           + ALL      +   +P  P      T+ V +    Q L+ +  + TG  +         
Sbjct: 49  LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 95

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134
                   T+ L   Y +  P    + + E       L RLI  +  K     + L    
Sbjct: 96  --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 151

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180
                  P     LA  +AD+ D        W              E L A+   +    
Sbjct: 152 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 210

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228
                  L+  S  W   + ++ A S                    +    E        
Sbjct: 211 -RDILANLRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 269

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281
            I + G +        ++  ++ H    +                       +  + +  
Sbjct: 270 RIFVLGISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQ 329

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                      Q     L  +    RE + +L     +         +            
Sbjct: 330 DLDALLAEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 385

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397
            +    +   + +    + +    +   E   +   L    + N     K   +++AD +
Sbjct: 386 LNFNNEQRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 445

Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
                   +        +  I   +S     +     +    LLN         ++  L+
Sbjct: 446 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 505

Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                         +    R       +    +    D  +  +            +   
Sbjct: 506 DVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 565

Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                        +  L   ++  +   +            + ++ +W       +    
Sbjct: 566 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 621

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623
                   +    +    L+S   ++       + +    I+II  L++ +  + +    
Sbjct: 622 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 679

Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
             +  +     L  R + F  + L G+NE  +P+  + N F   +MQ         +   
Sbjct: 680 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 737

Query: 683 QAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                 E     + +   +       +N   + S  + +LL        +  + +     
Sbjct: 738 DRYLFLEALLSAQEIFYLSYIGQSATDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 797

Query: 740 DWTRKL 745
           +++  L
Sbjct: 798 NFSEAL 803


>gi|157372051|ref|YP_001480040.1| exonuclease V subunit gamma [Serratia proteamaculans 568]
 gi|157323815|gb|ABV42912.1| exodeoxyribonuclease V, gamma subunit [Serratia proteamaculans 568]
          Length = 1123

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 108/982 (10%), Positives = 236/982 (24%), Gaps = 134/982 (13%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL+    +                 + V +    Q L+ +  E  G  + I 
Sbjct: 11  DLLKTLTSALIAREPLA---------DPFQQEVVLVQSPGMAQWLQMQLAEQFGIAANIA 61

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
                L           +L         S      +L  L+      L    +    +  
Sbjct: 62  ---FPLPATFIWDMFTRVLPGIPKESAFSKDAMTWKLMWLLP----DLLTQPEFAPLQHY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKY--GMWWLLAAD 186
           L+          LA  +AD+ D       +W       E +  L   +      W    +
Sbjct: 115 LTDDGDKRKIHQLAGRVADLFDQYLVYRPQWLESWQKGERIDGLAEAQQWQAPLWARLVE 174

Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--IIIAGSTGSIPATAR 244
                   +T+ L +             + A  +        P  + I G +   P    
Sbjct: 175 --------YTQELGQPEW-HRANLYRRFISALDKAETPPAGLPPRVFICGISALPPVYLE 225

Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIW----------NTITEKSTNITSSNTTYSTHPQY 294
            +  +  H +  ++      +    I                       S      +   
Sbjct: 226 ALQALGKHIDIHLMFTNPCRYYWGDIQSQSFLAKLQSRKRQHYRDKTEYSLFRDPDNASA 285

Query: 295 SLA---------KLLDFLDIKREDVKRLGN---------------VSNEMYGRSMVISKS 330
                        LL        D   L +                 N ++G    + + 
Sbjct: 286 LFNDAGEQDLPNPLLASWGKLGRDHHFLLSQIESSEEVFAFVDIPADNLLHGIQHDMLEL 345

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENK 386
                      T    +    +      ++L    + + E   +   L   L    +   
Sbjct: 346 KNSAVIGTTPETLESSDTKRRLDPADRSISLHACHSPQREVEVLHDQLLSMLADDPELTP 405

Query: 387 KKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
           +   ++ AD +        +         +   IS               SLL+      
Sbjct: 406 RDIIVMVADIDSYTPYIQAVFGNASPERYLPFAISDRKASQAHPALQAFISLLDLPQSRF 465

Query: 442 DFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLV 492
               +  L++ P    +F   E+ L   ++ +    +R   +  ++ +L        +  
Sbjct: 466 TSEQVLALLEVPALAARFSIREEGLRLLRHWVGESGVRWGLDDDNVRELDLPATGQHTWQ 525

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSIS 551
                         +          + +  LV  +   +   L      +       S+ 
Sbjct: 526 FGITRMLLGYAMDSNAGDWQGVLPYDESSGLVAELAGQLAELLAALSRWRQRLGQARSLP 585

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
           +W  L    L+     +      L   E  +  + LF   +              D +  
Sbjct: 586 EWQPLCRQLLETFFEQDGETEVVLALIE--REWNRLFEFGLAARYPDDVPLSILRDELAA 643

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            +D E +  +      +     +  R + F  + L G+N+GV+P+      F     Q  
Sbjct: 644 RLDQERISQRFLAG-QINFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGFDLMAQQVK 702

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG----- 724
              ++             + +  + L  +   R   +N     S  +  LL         
Sbjct: 703 RGDRSRRDDDRYL-FLEAILSAQQRLYISFIGRSIQDNSERYPSVLVTELLEYLEQSYCL 761

Query: 725 --------------------------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
                                         +N     +        L    ++     P 
Sbjct: 762 PGDEHLDADGSARLVGKHLLNWHSRMPFAAENFLPDTEAQSYAAEWLPAADRRGAAHPPF 821

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
             P L  +    S  ++ +    P   + +  L + FI    + PD         N+   
Sbjct: 822 NQPLLPDEKTQVSLDDLLRFYRHPIRAFFQLRLGVSFILEETELPDEEPF--TLDNLSRY 879

Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
               ++     +     +                  I+     +      E     +S  
Sbjct: 880 QFNSQLLNTLIDGEDASRLFQRVRAAGGLPFGPFGEIYWQKQQEEMSELAEQVRAERSEG 939

Query: 879 EKIFVNIPAKMAIESIGIHLTG 900
                    ++ I+  G+ ++G
Sbjct: 940 ------HSLELDIDIAGVRISG 955


>gi|297192221|ref|ZP_06909619.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151257|gb|EDY64039.2| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 1190

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 72/667 (10%), Positives = 162/667 (24%), Gaps = 65/667 (9%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV----------------EEKF 89
            V     T +A  EL         +     P     GD                     F
Sbjct: 18  QVLGLTFTNKAAGELAERVRTALVRAGVTDPDAIDPGDPSSAFGGDTPVGEPRISTYHAF 77

Query: 90  TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
              LL  + L   +    RLL  A    +    L +         P   P    +   L 
Sbjct: 78  AGQLLKDHGLRIGLEPTARLLADATRYQLAARVLREA--------PGPYPALTRSFPSLV 129

Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKY 194
            +L  +   +         L     E                       A   L   +  
Sbjct: 130 SDLLALDAELAEHLVPPGRLKEYDTELLRTLEGARLTNVDLRKVPEAAEARRELLDLTLR 189

Query: 195 WTERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
           +     + +              AL R E   +++     +++     +  A   L+S +
Sbjct: 190 YRAAKRQRDLLDFGDQIALSAELALTRPEVGTVLRDEFRVVLLDEYQDTSVAQRLLLSGL 249

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                G  V    D       W   +  + +    +  +S         L          
Sbjct: 250 FGQGTGHAVTAVGDPCQAIYGWRGASVANLDDFPVHFPHSDGRPADRYSL---------- 299

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                  S        ++  +          +  +   +     +    V         E
Sbjct: 300 -------SENRRSGGRLLHLANGLATPLRAMHEGVEALRPAPGAERDGIVRCALLPTHAE 352

Query: 370 EAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
           E   +A ++   +   K+    A++         ++  L    + +++     L      
Sbjct: 353 EIEWLADSIAHLVRTGKEPGEIAVLCRTAGDFPEIQGALVARDVPVEVVGLSGLLHLPEV 412

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
           + L ++   +       ++  ++  P  + G  +  L   +  L +     + +      
Sbjct: 413 ADLVAMCEVLQDPGANASLVRILTGPRWRIGPRDLALLGRRARLLVHH--ASADDDPERR 470

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
           L + V      +  +          S   ++  +            L     +   +  +
Sbjct: 471 LAAAVEGTDPAEIISLADALDTFLESAGGEDDGLPFSAEARVRFARLAAELRDLRRSLAD 530

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             +    ++  T    V L            E       + +            A     
Sbjct: 531 PLMDVLHRVLSTTGLEVELSASPHALAARRRETLANFLDIAAGFAALDGEATLLAFLGFL 590

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                 +           +T+ +L   +S+ L +D + + GL    +P + A+  + S+ 
Sbjct: 591 RTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVAKHFPNDQAREAWTSQS 650

Query: 668 MQSDLNL 674
                 L
Sbjct: 651 KVLPHAL 657



 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 70/256 (27%), Gaps = 33/256 (12%)

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                    +  +    W R LD    +   +R +        P + S S++ +L  DP  
Sbjct: 949  EREEALTPEEARAVASWDRDLDALAGE--LRRTRATVRDVLVPASLSASQLLRLAADPDG 1006

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
              A+ + +    P          RGT FH  +    ++                      
Sbjct: 1007 F-AQELARPMPRPPQ----PAARRGTRFHAWVESRFEEMPLP---------------MLG 1046

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
             + LP   D         ++      E    +         P +  +      + G  D 
Sbjct: 1047 PDELPGGADEHDIADEQDLAALKDAFERTPYARRTPYRDEAPFQFTLAGR--VVRGRIDA 1104

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
            +     G  +I D+KT  N   +        QL++   A        +D        ++ 
Sbjct: 1105 VYRTGEGTYEIVDWKTARNGVADP------LQLAVYRLAWAEQHGIPLDAVT---ATFVF 1155

Query: 965  LKQKFKIDCITNDKKK 980
            ++    +       + 
Sbjct: 1156 VRTGEIVHPDGLPDRA 1171


>gi|153825989|ref|ZP_01978656.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae MZO-2]
 gi|149740306|gb|EDM54447.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae MZO-2]
          Length = 1148

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 115/985 (11%), Positives = 250/985 (25%), Gaps = 133/985 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRTEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W       +    Y      
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179

Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             +           +   A  +         + I G +   P     +  +  H +  ++
Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297
           L     H    I +                                    ++ Q SL   
Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVESYLQESLHLS 299

Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342
                 LL  +     D   L   +++                 I    L          
Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                  P+I      + +    +   E   +   L    + +     +   ++  D N 
Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         I   IS       +   +    LL           +  L++ P
Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479

Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496
             +A+F   E+  + AK  +E   +R   NS    +                + L+   +
Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +     +         + + ++  L   +   +  L   ++  + T        W   
Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLSQTQSMDQWRYWLNE 599

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L  +    +L +L  ++ + G     +      ++T  + G 
Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  ++
Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGTDF 727
             +          + +    L  +   R   +N   + S  +  LL        L G + 
Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEH 772

Query: 728 FDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKRPK------------PFPP 762
            ++     +     T +               +  +     R +             +  
Sbjct: 773 LESDDSGRRLLEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819
             + P      E+++    P   + +R LK+     +   + D      G   + +  EL
Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           ++  +          +          +   P        L  +   +    E+      +
Sbjct: 893 VENLLACCDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQRAQQALALAEKIGFLCHQ 952

Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900
            +       + +    +   + L G
Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|152990114|ref|YP_001355836.1| hypothetical protein NIS_0365 [Nitratiruptor sp. SB155-2]
 gi|151421975|dbj|BAF69479.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 731

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 104/333 (31%), Gaps = 49/333 (14%)

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
               +   + ++  LESR   ++ +++   NE   PK  +++ FL   ++    L T   
Sbjct: 378 FDDVRGGKVTVMEMLESRGCRYEGVVIVDFNEEAVPKIGSEDLFLDTNLRKKTGLPTMTD 437

Query: 680 YIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                 H +       + +  +         +  SR+   L           + KR +  
Sbjct: 438 KESLQKHYYYQLMRYAKKVALSYVKN---EESDISRFFYELPFQK----QQEVPKRYENV 490

Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
           L +T+       +       P           + + ++ L+  P   Y R I ++     
Sbjct: 491 L-YTKTQKENVYEKDATFKLPK--------VLTPTTLEVLLRCPLRYYLRYIEQIK---- 537

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
               P     G   H  I E +  R           ++   +   ++          +R 
Sbjct: 538 ---GPKEKIVGFDIHEAINEAVASRPES--------VQDYFEKIMQRLTKNVSRYEEYRL 586

Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------SIGIHLTGFADRIDLLKSGF 912
                    +E EEK++   ++ F  +  K++IE           L   ADR+     G 
Sbjct: 587 R--------VEWEEKLRKFAQEDFSLLRGKVSIEKNHGRAFGNFILEARADRVVKR-DGK 637

Query: 913 VDITDYKTGDNPKKETAQKLID--PQLSLEAAA 943
           + I DYKT          +  +   Q    A  
Sbjct: 638 IFIYDYKTNKTGNYLNVYEKDENKLQAEFYAYI 670


>gi|163853836|ref|YP_001641879.1| double-strand break repair helicase AddA [Methylobacterium extorquens
            PA1]
 gi|163665441|gb|ABY32808.1| double-strand break repair helicase AddA [Methylobacterium extorquens
            PA1]
          Length = 1147

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 92/843 (10%), Positives = 203/843 (24%), Gaps = 68/843 (8%)

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAA 185
            + +     PL   +  A A+     L  +   I    E +   L AL  +          
Sbjct: 321  LDEQARLIPLFDALRAARALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIH---KTL 377

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            D L      W    ++      +           +            A   G+   T   
Sbjct: 378  DLLSRVGASWVLYKLDRGVDHVLV--DEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTR 435

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
               V +         G D              +          S    +  A  +     
Sbjct: 436  F-AVGDPKQSIYSFQGADPREFELTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVD 494

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                V       +   G    +  S        +    I E         ++  A ++A 
Sbjct: 495  AVFGVPDHFAGLSFDAGAPGTVHASARAGVPGAVELWGIEEPAEAEEPDAWA--APVDAP 552

Query: 366  NEREEAISIAIALRMSLDEN-------------KKKSALITADRNLARRVKLELTRFGIN 412
                 AI +A  +  ++                     L+         V   +   G+ 
Sbjct: 553  EPNAPAIVVARRIARAVKTWTTKGDACGRIWRPGDVLILVRKRSAAFEEVIRAMKGLGVP 612

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            +     + ++  +    L ++  A     D + +AT +K PL      +     A+    
Sbjct: 613  VAGQDRLEVAGHIAVLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFA 672

Query: 473  LVALRGNKNSYDIMDLKS----LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                          D  +      L              + + L       + L+     
Sbjct: 673  ETLEDALTRHAQAGDGAAIRGLAALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGG 732

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
            +    +  +                          +       +        G ++    
Sbjct: 733  EAGDAIDVFLAQAADAEN-----------GGDAPCLDAFLADYIVRPGRGRSGLSVKRDL 781

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                     +  +  + ++    ++              L +  T E  L          
Sbjct: 782  ESGRNEVRVMTVHGAKGLEAPVVVVIDGCEPLGRNDPPLLGLDSTAEGPLPP-------- 833

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
                VW     ++   +   +S L  +  E++         M     HL+          
Sbjct: 834  ----VWTGGRTQDCAATLAARSALQARAREEHNRL--LYVAMTRAADHLVIAPYRGATRE 887

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL-EAQP 767
               +   + R+ +  G    + ++        W      +          P P       
Sbjct: 888  TPASWCEMVRIGLERGLGDGEAVETEHGPITIWRDGSAASLAAAAADTAPPEPETVPDWL 947

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             + +  E +       +                 D +   RG L H+++  L +    + 
Sbjct: 948  FSAAAPEAEAAPPLSPSGALGAADGQRQPRRRLGDAEARRRGALVHSLLEHLPRIEPARR 1007

Query: 828  TPEINHLMKQ---IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                    +     ++    K+ +   + +I       +       E             
Sbjct: 1008 AEAAERFARARAPTLEEAKRKDLVRAVLRLIEAPDLAPLFSDQARAEVA----------- 1056

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-AQKLIDPQLSLEAAA 943
            +  ++ +E I   +TG  DR+ +++ G V + D+KTG  P  +    +    Q++L A  
Sbjct: 1057 LSGRIVVEGIERDVTGRIDRL-VVEDGRVILCDFKTGRPPADDAPLPEREAAQVNLYARL 1115

Query: 944  LKA 946
              A
Sbjct: 1116 AAA 1118


>gi|293449146|ref|ZP_06663567.1| exodeoxyribonuclease V [Escherichia coli B088]
 gi|291322236|gb|EFE61665.1| exodeoxyribonuclease V [Escherichia coli B088]
          Length = 919

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 96/916 (10%), Positives = 214/916 (23%), Gaps = 90/916 (9%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63  PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                   L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             L +             +                + I G +   P   + +  +  H  
Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
             ++      +    I +              ++                          
Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
              LL        D   L +           +                +           
Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                 +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475

Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502
            P+    F   E+ L   +  +    +R   +  ++ +L+       +            
Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535

Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                     S    + +  L  + +    + L+     +        + +W  +    L
Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
               L +             +   ++ ++ +              D + + +D E +  +
Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + I   +  R + F  + L G+N+GV+P+  A   F   +M          +  
Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710

Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNL 731
                  E     +  L  +   R   +N     S  +Q L         L G +  +  
Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770

Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN--DPYAVYARR 789
           +   +     T         P   +P        +    +    K       P       
Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830

Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
            + L+ +  F   P R                +  +     +  L +  I+       + 
Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890

Query: 850 PHIDIIWRHLFHKISH 865
                     F     
Sbjct: 891 QDDAERLFRRFRAAGD 906


>gi|257063576|ref|YP_003143248.1| RecB family exonuclease [Slackia heliotrinireducens DSM 20476]
 gi|256791229|gb|ACV21899.1| RecB family exonuclease [Slackia heliotrinireducens DSM 20476]
          Length = 889

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 69/645 (10%), Positives = 161/645 (24%), Gaps = 101/645 (15%)

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
               L +      +  G   +     +             +        K PL       
Sbjct: 183 RVHALDQSIEASFLFPGGAYARPSLVAD-----QIAASCAEGATAFVACKKPL-DVYEAC 236

Query: 462 KYLSRA-------KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
             L  A       +           +    + + KS    R A   +    P        
Sbjct: 237 APLLAAQGITCGVRARKRFFDTAFGRAIVSLYEFKSADECRPALLTDFLTSPFSGVGRRT 296

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                A +  + ++     L               I      ++     +   + R   +
Sbjct: 297 AFDLDARMRGNRLITKEECLARVLGESEQARYCDEIVSDLDASILIGSLIGSMQGRSDWS 356

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                E    +    +++ET      +    +  +        V     +   +      
Sbjct: 357 DACRVEQIAAAFALRRVMETARACGLDLPCAMMFLE--FMYVNVSQATAEPPQVLFATQQ 414

Query: 635 E---SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
           E    R  +FD ++   L+   +      +   +  +   L + + +  + +   +F   
Sbjct: 415 EASNYRPGSFDVVVATELDSVSYAVKNRTDSVTT--LFEKLGIDSKDDALARVRRNFVAT 472

Query: 692 NGTRHLIYTRSLRENNI---PTIASRWLQRLLVL----------------GGTDFFDNLK 732
                + +      N+    PT     LQ  +                     +    ++
Sbjct: 473 ENLARVQFVCERAMNDEDANPTYPCIPLQEFIDCYRENPSATDDVDETYGLPQELLATVR 532

Query: 733 KRGQCYL--DWTRKLDYTTKQPHYKRPKPFPPLEAQPRT----------------YSFSE 774
            +G+  L  +    L     Q    RP      +                      S S+
Sbjct: 533 SKGEEALYENAAHDLQPQQPQVVVDRPVAGQVSDGSRHLVVLPRIDRTCVVETPCLSPSQ 592

Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI----KKRINKNTPE 830
           I+  +  P+  +A R L+L       +     + G   H ++ +      ++   + T +
Sbjct: 593 IESYLECPHKWFAHRRLRL---EGIDEGFGAVEMGDFAHAVLNDFYTVFMEEGHARVTAD 649

Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH-----------------SFLEHEEK 873
                 +++ + F+            R   +++                    F+  E  
Sbjct: 650 NRDRAVEVLAACFDGRRAIQAEPAHGRQRRNRLVATTSVEELQIDALKDKLVRFVLREAN 709

Query: 874 IQSSIEKIFVNIPAKMA--IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
           +        +     +A  ++  G+ + G  DR+D+ ++G   + DYK            
Sbjct: 710 MLPDFHPHLLEYEIPIAQAVDYAGVKVFGRVDRVDIDEAGRAVVIDYK----GSVSERYA 765

Query: 932 LI---------DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
                        Q  + A  L+           V    YI   +
Sbjct: 766 AFGEGGVLANGKVQALIYAQLLRR-----HLGLDVRGALYISYGK 805


>gi|170760102|ref|YP_001785766.1| ATP-dependent nuclease subunit B [Clostridium botulinum A3 str. Loch
            Maree]
 gi|251764551|sp|B1KUY8|ADDB_CLOBM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|169407091|gb|ACA55502.1| ATP-dependent nuclease subunit B [Clostridium botulinum A3 str. Loch
            Maree]
          Length = 1147

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 30/255 (11%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-- 826
              S S +++    P+A + +  LK      F       D G   H+I+ +   +   K  
Sbjct: 774  KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKKGI 831

Query: 827  -----NTPEINHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875
                 +       + ++I+   + ++L          +      KI     +L  E   +
Sbjct: 832  DWDTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891

Query: 876  SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTGD 922
             + +  +  +   +  +             ++L G  DR+DLL K G     I DYK+G 
Sbjct: 892  GNFKPSYYELSFDIDGDYPPIAMELHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSGT 951

Query: 923  NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
               K       +  QL +   A L   +       +   L Y++L      + +    K+
Sbjct: 952  KEFKLSDVYYGLQLQLLIYLDAILTELAERFGIDGEPGALLYLKLDDPIVKNIVDMSDKE 1011

Query: 981  YSADELSEKSLKNLI 995
                 +    +K LI
Sbjct: 1012 IEKSIIKNLKMKGLI 1026


>gi|229513961|ref|ZP_04403423.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae TMA 21]
 gi|229349142|gb|EEO14099.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae TMA 21]
          Length = 1148

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 113/985 (11%), Positives = 243/985 (24%), Gaps = 133/985 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            W+    +        W       +    Y      
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWDAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179

Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             +           +   A  +         + I G +   P     +  +  H +  ++
Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297
           L     H    I +                                     + Q SL   
Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVENYLQESLHLN 299

Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342
                 LL  +     D   L   +++                 I    L          
Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIDIQRDSLLHHIQADILHLQEHQDDAK 359

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                  P+I      + +    +   E   +   L    + +     +   ++  D N 
Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         I   IS       +   +    LL           +  L++ P
Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479

Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496
             +A+F   E+  + AK  +E   +R   NS    +                + L+   +
Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +     +         + + ++  L   +   +  L   ++    T        W   
Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L  +    +L +L  ++++ G     +      ++T  + G 
Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLVDAGYQQAISPAIIRQVLTNKLSGT 654

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  ++
Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731
             +          + +    L  +   R   +N   + S  +  LL     +     D  
Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772

Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762
            +           L                     +     R +             +  
Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819
             + P      E+++    P   + +R LK+     +   + D      G   + +  EL
Sbjct: 833 EVSWPMVLDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           ++  +          +          +   P        L      +    E+      +
Sbjct: 893 VENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952

Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900
            +       + +    +   + L G
Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|226358111|ref|YP_002787850.1| ATP-dependent nuclease, subunit B (AddB); UvrD-like DNA helicase
            C-terminal domain protein [Deinococcus deserti VCD115]
 gi|226319754|gb|ACO47748.1| putative ATP-dependent nuclease, subunit B (AddB); putative UvrD-like
            DNA helicase C-terminal domain protein [Deinococcus
            deserti VCD115]
          Length = 897

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 93/696 (13%), Positives = 183/696 (26%), Gaps = 91/696 (13%)

Query: 363  EADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGI- 419
            E  +   E  S    +R  LD+       A+I            ++ R      +S G  
Sbjct: 254  EFPDIESEVRSCLRQVRSWLDDGVRADHLAVIVRHEATYLAALADVAREYAVPLVSGGQL 313

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            PL  T   S+L + ++A  +   + A   ++ HPL +        +RA        L   
Sbjct: 314  PLLHTPLGSLLQAWIDAHAREWRYSATRRVLTHPLLRLSVDALARARALQPGCPSGLGVW 373

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                D +D+                +     R   +           +   ++ L    +
Sbjct: 374  NADLDWLDVPEDTTWLEGLGVLQRLLVDLGVRDQCQHDPA-------LNVAVSLLGDRLS 426

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
             +       S      L    LQ   +        +        L              +
Sbjct: 427  AEARRTDACSREQLLGLVRHVLQTTTMPVLLGRGGVRVANPLAAL------------GRR 474

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             + +  + +   L    +    +  S+T          + +   L               
Sbjct: 475  FDHVWVLGVSDTLFPARSADHPLIDSATRRRWSRSGVHVPDVSALA-------------- 520

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE-NNIPTIASRWLQR 718
                                 + +A     +A     L+ +R  R  +      S +  R
Sbjct: 521  --------------------SVEEALFLGAVAGAGHELVISRPRRGPDGRELRPSPFWSR 560

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRK---------------LDYTTKQPHYKRPKPFPPL 763
            L           L    +  L                     +           +   P+
Sbjct: 561  LGEGKAEAAPLALGSEMERLLTLALAGQTLPGSIQGKVQVERERDAGHFGPHSGQLDSPI 620

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
              + R +S S++       Y  + +++L+LD         DR   GTL H  +   ++ R
Sbjct: 621  RVEERRWSPSQLHAAGACRYRWFTQKLLRLDEPLDPDLVEDRRVTGTLLHAALEAALQDR 680

Query: 824  INKN-TPEINHLMKQIIDSHFEKENLPPHIDI-----IWRHLFHKISHSFLEHEEKIQSS 877
               + T +     ++ +     +      +       + R    + +   +     +   
Sbjct: 681  AAGDTTEDRVRRAEEALKRKERQLWASGELRGGPLWPVDREEIRRTAVRAVRSPAFVPPG 740

Query: 878  IEKIFVNI--PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLI 933
               + +       +        L G  DR+D    G + +TDYKTG    K        +
Sbjct: 741  WVPVHLEERREFTVRAGDATFALVGIVDRLDQTPDG-LTVTDYKTGSYVSKVVFEGVMNL 799

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
            + QL L   AL A     +      NL       +       + +K Y   +   K    
Sbjct: 800  EVQLPLYMEALGAAGGRYLSIENAENL------PEAAGPAAESPRKSYRWAQHQAKVSLF 853

Query: 994  LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
            L  + T L  G            ++        + R
Sbjct: 854  LENLATALAQGNV--APSPDHKREACAYCAVQPVCR 887


>gi|329939647|ref|ZP_08288948.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329301217|gb|EGG45112.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 1244

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 78/789 (9%), Positives = 187/789 (23%), Gaps = 73/789 (9%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90
               +    V     T +A  EL     +   +     P         G+ +      F 
Sbjct: 57  GTGQVAPEQVLGLTFTNKAAGELAERVRKALVRAGVTDPDAIDPDNPPGEPLISTYHAFA 116

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL  + L   +    RLL  A    +    L +     YP    S P   ++ + L  
Sbjct: 117 GRLLTDHGLRIGLEPTSRLLADATRYQLAARVLREA-PGPYPALTRSFPDLVSDLLALDS 175

Query: 151 NLADIIDI------IETEEKKWEDLHALKNEKYG--MWWLLAADFLKIASKYWTERLVEL 202
            LA+ +         + E         L N           A   L    + +     E 
Sbjct: 176 ELAEHLVRPTEVQAFDAELLDTLAGVRLGNADLRKVPEAAAARRSLAGLVERYRAAKRER 235

Query: 203 NASSPVGYQIALMRA----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
           +                  E   +++     +++     +  A   L+S +    +G  V
Sbjct: 236 DLLDFGDQIALSAALSGLPEVGRILREEFRVVLLDEYQDTSVAQRVLLSGLFGGGSGHPV 295

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               D       W   +  + +   ++  ++     +   L                 S 
Sbjct: 296 TAVGDPCQAIYGWRGASVANLDDFPAHFPHADGRPAARQAL-----------------SE 338

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                  ++  +          +  +   +     +    V         EE   IA ++
Sbjct: 339 NRRSGGRLLDLANGLAAPLRAMHAGVEALRPAPGAEREGQVRCALLRTHAEEIGWIAESI 398

Query: 379 RMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
              +   K+    A++         ++  L    + +++     L      + L ++   
Sbjct: 399 AHLVRTGKEPGEIAVLCRTAGDFAEIQGALVARDVPVEVVGLSGLLHLPEVADLVAVCEV 458

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           +       ++  L+  P  + G  +  L   +  L +   R +++  D+    ++     
Sbjct: 459 LQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVSHTRVDEDDPDVRLAAAVEGVDP 518

Query: 497 ATQKNNTHVPH--WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               +         +  +    ++  +            L     +   +  +  +    
Sbjct: 519 TEVVSLADALDTFLELPMEAGHEDDGLPFSSDARVRFARLAAELRDLRRSLADPLMDVLH 578

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           ++       V L            E       + +            A           +
Sbjct: 579 RVLAVTGLEVELSASPHALAARRRETLANFLDVAASFAANEPETSLLAFLGFLRTAAQYE 638

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF----------- 663
                      +T+ +L   +S+ L +D + + GL  G +P    +  +           
Sbjct: 639 KGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGTFPSTQGREKWTAQGKVLPHPL 698

Query: 664 ------------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT----RSLRENN 707
                                +    E  + +      +       +             
Sbjct: 699 RGDAATLPEVESWDSRGLRGFHEAMKEHQLTEELRLGYVTFTRPRSLLLGSGHWWGPSQK 758

Query: 708 IPTIASRWLQRLLV-----LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
            P   S +L  L        G  + +      G+                          
Sbjct: 759 KPRGPSDFLVALYAHCAAGHGEIEAWAEPPAEGEENPALLAASADHAWPLPLDEAALARR 818

Query: 763 LEAQPRTYS 771
             A     +
Sbjct: 819 RAAAETVLA 827



 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/549 (10%), Positives = 122/549 (22%), Gaps = 47/549 (8%)

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                 + A   ++ HPL         +    +          K      +L+   +    
Sbjct: 682  QGREKWTAQGKVLPHPLRGDAATLPEVESWDSRGLRGFHEAMKEHQLTEELRLGYVTFTR 741

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
             +       HW     ++ +  +  LV     C       +                  +
Sbjct: 742  PRSLLLGSGHWWGPSQKKPRGPSDFLVALYAHCAAGHGEIEAWAEPPAEGEENPALLAAS 801

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                  + LDE          E         + +    +   A      D  T       
Sbjct: 802  ADHAWPLPLDEAALARRRAAAETVLAHLEHTASLASASAAEAAAPRAAHDPFTHEDPDWP 861

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
               +                    D L       G   +        +   +       +
Sbjct: 862  PPDEEPPYDPDEEPPYGPPDDDPLDGLPEEEPFPGPPEEGDEDGYVYADHEEEPGGGTGS 921

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
                        +       +           +   R +                +  + 
Sbjct: 922  R----------SVGRPADRPVVPHQAPPPGTQSGPER-IPHSRTADVPGGTPLTPEEART 970

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
               W R LD  T +    R      +     + + S++ +L  DP  + A+ + +    P
Sbjct: 971  LASWDRDLDALTGELLRARAGVTEVVLPA--SLTASQLMRLAEDPDGL-AQELARPMPRP 1027

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                      RGT FH  +    +                        E      +I   
Sbjct: 1028 PQ----PAARRGTRFHAWVESRFEALRLPMLE--------------PDELPGTEAEIADE 1069

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG---FVD 914
                 +  +F       +       V  P ++ I      + G  D +     G     +
Sbjct: 1070 RDLEALKEAFARTPYAHR---TPYRVEAPFQIGIAGR--VVRGRIDAVYREGEGGTARYE 1124

Query: 915  ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
            I D+KT   P  +        QL++   A        ++    A   Y+R  +  +   +
Sbjct: 1125 IVDWKTNRAPTADP------LQLAVYRLAWAEQRGVPLERV-TAAFVYVRRGEVVRPPDL 1177

Query: 975  TNDKKKYSA 983
                +    
Sbjct: 1178 PGRAELERL 1186


>gi|124486140|ref|YP_001030756.1| hypothetical protein Mlab_1322 [Methanocorpusculum labreanum Z]
 gi|124363681|gb|ABN07489.1| UvrD/REP helicase [Methanocorpusculum labreanum Z]
          Length = 1057

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 93/839 (11%), Positives = 207/839 (24%), Gaps = 129/839 (15%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGY----QIALMRAEAEHLMKGTKGPIIIAGSTG 237
                      S+       +             +  +     +  +      I++     
Sbjct: 311  AALGRVASAVSERTVREKQQRGVLDFDDLIQKTRDLIENDAVQKTLNARYRYILVDEVQD 370

Query: 238  SIPATARLMSTVANHP-NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
            + P    ++  +   P     +    D      ++        N   +            
Sbjct: 371  NDPVLTDIIRILCGDPKENNRLFIVGDAKQSIYLFRGADVSGFNAFQTVFA--------- 421

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD-MRNTDILENKIPNIQKC 355
                        D   L      +     +++  F                   P+    
Sbjct: 422  -----------NDPVELDTSFRTVPEIIRLVNHVFSSVFADPKEIWEAGYGELTPHRAGH 470

Query: 356  FSDVALIE-------ADNEREEAISIAIAL-----RMSLDENKKK----------SALIT 393
               V LI        A++ R EA ++A  +     R  L    K            A++ 
Sbjct: 471  SGSVTLIRLPTGETKAESMRREARTLASWIFDTVSRKKLSVYDKDGTCRPARFGDIAVLI 530

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              R    +++  L  +G+      G            T+LL AI    + + +  ++K P
Sbjct: 531  EARTHMDKLRHALESYGVPYTEEKGYSFYQKQEVFDFTNLLKAIVYPEEDIPLYGVLKSP 590

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                   E   + A +                      ++ R+               + 
Sbjct: 591  YFGISDAELCRAAAGSGRP-------------------LIWRLRNYATANPDSKIGKAVG 631

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            +  +  A +  +  +  ++ L+          G     + T      L  +        P
Sbjct: 632  DLARWHAEIGTEPFVPFLSRLIAESGIAAVYGGLPFGREATANLEK-LVAIARSRSMNRP 690

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
               +E  G   + +  +  E    + +   + + I+T         P +           
Sbjct: 691  FSVYEYLGILDTCMEEEFDEREGMVPSEEDDRVKILTVHASKGLEYPILA-LCFAGTGDG 749

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
            L+     FD  +  G+   +  +    +  +       L  +   K + +    F +A  
Sbjct: 750  LKVSAPVFDAELGVGIPVRLAGEGEGLSFVI-----ECLKPEMKAKLLAERKRLFYVAMT 804

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
                    S  +       + +L   +   G      L +     +     L     +  
Sbjct: 805  RARDHLVISGTDGKKGPETNSFLS--MYDAGISGCPYLPELITDCVAEPGDLCRIRPKVP 862

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                    P + +    S +                   +        +     RGT  H
Sbjct: 863  DGWTDTPLPTKEEEAAQSLTA-----------------AVRNRTPSAAEEAAMLRGTALH 905

Query: 814  NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
             +                        D+  ++  LPP     +   +     +FL     
Sbjct: 906  EVFEGKP------------------ADAAVKRYGLPPAAAEEFAAKY----AAFLASPLM 943

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
              ++       +         G  L G  DR+   + G   I DYKTG  P K   ++  
Sbjct: 944  QNAAKSICEQEVAFSFE----GTPLNGVIDRLVQYEDGSWMIIDYKTGR-PSKMELER-Y 997

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
            + QL++     K      +  +      Y+               ++ +   ++EK  +
Sbjct: 998  ESQLAVYFLWAKR-----LFGKDPEVCLYL---SDKNEVVSFTMDEERAMGLVAEKMWE 1048


>gi|307262384|ref|ZP_07544030.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306867932|gb|EFM99762.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 1114

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 86/786 (10%), Positives = 198/786 (25%), Gaps = 93/786 (11%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
           + ALL      +   +P  P      T+ V +    Q L+ +  + TG  +         
Sbjct: 13  LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 59

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134
                   T+ L   Y +  P    + + E       L RLI  +  K     + L    
Sbjct: 60  --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 115

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180
                  P     LA  +AD+ D        W              E L A+   +    
Sbjct: 116 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 174

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228
                  L+  S  W   + ++ A S                    +    E        
Sbjct: 175 -RDILANLRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 233

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281
            I + G +        ++  ++ H    +                       +  + +  
Sbjct: 234 RIFVFGISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQ 293

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                      Q     L  +    RE + +L     +         +            
Sbjct: 294 DLDALLAEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 349

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397
            +    +   + +    + +    +   E   +   L    + N     K   +++AD +
Sbjct: 350 LNFNNEQRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 409

Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
                   +        +  I   +S     +     +    LLN         ++  L+
Sbjct: 410 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 469

Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                         +    R       +    +    D  +  +            +   
Sbjct: 470 DVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 529

Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                        +  L   ++  +   +            + ++ +W       +    
Sbjct: 530 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 585

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623
                   +    +    L+S   ++       + +    I+II  L++ +  + +    
Sbjct: 586 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 643

Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
             +  +     L  R + F  + L G+NE  +P+  + N F   +MQ         +   
Sbjct: 644 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 701

Query: 683 QAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                 E     + +   +       +N   + S  + +LL        +  + +     
Sbjct: 702 DRYLFLEALLSAQEIFYLSYIGQSATDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 761

Query: 740 DWTRKL 745
           +++  L
Sbjct: 762 NFSEAL 767


>gi|300812421|ref|ZP_07092851.1| putative ATP-dependent nuclease subunit B [Lactobacillus delbrueckii
            subsp. bulgaricus PB2003/044-T3-4]
 gi|300496588|gb|EFK31680.1| putative ATP-dependent nuclease subunit B [Lactobacillus delbrueckii
            subsp. bulgaricus PB2003/044-T3-4]
          Length = 1179

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 105/994 (10%), Positives = 246/994 (24%), Gaps = 166/994 (16%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY-PESPLSLPIS 141
                  +         ++  + +    + L ++I   R++L               +  +
Sbjct: 71   SFSRLAWFFFKKADLLMSESLDDAAATMILEQIIDKRRDELLLFKNSHANSGMIKQVYST 130

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                     +L ++++              L NE            L +  + + E + E
Sbjct: 131  ILQVHTGQLDLGNLLERAA----DPAVALDLDNET-----RDKLHDLDLIYQDFLEIVSE 181

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             + ++     I L +  A      ++    +   +         M  +A   +       
Sbjct: 182  KHFATKDELNIQLNQLLASRPDLVSQASFYVTDFSHFSIQEKMTMQLLAAFASEMTF--- 238

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEM 320
                             T   S     +    Y + K +  L                  
Sbjct: 239  --------------AFKTADGSVIEPAAGEYDYVVQKTIKDLTGYFSAHDFAW------- 277

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
              R  + S      D +         +          ++ L++AD+   EA  +A  +  
Sbjct: 278  -EREKIASPVSPARDLNQAWQGQGQPD--------LDNLQLVKADSRYAEAYFVARTIYD 328

Query: 381  SLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             +       +   ++  +           L +  I         +       +L +L   
Sbjct: 329  EVALKGCQYRDFLVLAPNLQEYETYLAPILRQNQIPFFDDLQQQMKYHPLVLLLENLGKL 388

Query: 437  IFKLNDFMAIATLVKHPLAKFGF--------PEKYLSRAKNALELVALRGNKNSYDIMDL 488
            + +  D  A+ +++K  L    +         E    R  + LE  AL            
Sbjct: 389  LQQAGDTPALLSIMKTRLLIPDWYLEGDAEAGEAAYLRDVDQLENFALAHGIKYSLWQKP 448

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                        +      W         +    L D  +  I+ L +   ++  +   +
Sbjct: 449  LKDFTKAQVIALDQEQYQKWL--------DRLDKLRDFFVSKISRLASQLKSEKDSMTAV 500

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID- 607
             +     +       +     +   +   ++  +        +      +  N   +   
Sbjct: 501  KLFFDFLVKNGVSARLEAWRLKASESGDLQQAQQPEQCWNLLLSLLKDYLLVNPENFAWA 560

Query: 608  ----IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--------NEGVWP 655
                ++T                 + +      +   +  + + G         N+    
Sbjct: 561  DFFKMLTAAFSQANFATIPASLDAVTLSEYGMVQTSGYKQVFIIGAANGSLPQINDQPNF 620

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTI 711
              T     L+     +  L+ +++             +A  +  +  +  +   NN    
Sbjct: 621  LTTENLASLADFFDQEAYLEDSQQLRNLDQEYQFGNALALASDRVYISYPVINSNNDLLD 680

Query: 712  ASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------ 758
             S + +RLL L                K R +        L        Y          
Sbjct: 681  PSIYYKRLLKLVNGREYRQRDLPDTAEKDRTEFARQLLLFLTSPRASLGYLTYAEENSAQ 740

Query: 759  -------------------------------PFPPLEAQPRTY-------SFSEIKQLIN 780
                                           P    E             S S+++    
Sbjct: 741  SPLVAKLVELSRQYEEEKAEEIAEGMAYDNNPQDISEDLAERLYGKDLLSSVSQLESYYQ 800

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------- 829
            + +  +    L+L      + + +    G  FH     L+K+   KN             
Sbjct: 801  NSFEYFLNYGLRLRPR--AENELNAIQSGNYFHRTFELLLKEMQKKNIEIDKLSELDLEL 858

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK----ISHSFLEHEEK---IQSSIEKIF 882
             +  +  +I+     ++ L    +      F K    ++ S+   +++     +  E  F
Sbjct: 859  LLKQVRSEILREPLYQQFLRDPFNEYLFKAFDKTTSKVAQSYRRKQQENKMRATYGELAF 918

Query: 883  --VNIPAKMAIES------IGIHLTGFADRIDL-LKSGFVD--ITDYKTG-DNPKKETAQ 930
                  A + +          I L G  DR+DL      V   + DYK+   +       
Sbjct: 919  GPAEKLAGLVLPLKKFAGQRKISLRGKIDRVDLFNGDQHVLGQLIDYKSSDHSFNLARFA 978

Query: 931  KLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962
              +D Q+      L+      +      +   FY
Sbjct: 979  SGVDLQMIAYLDVLEKNQDLLAGGRQFDLLGAFY 1012


>gi|240141289|ref|YP_002965769.1| putative helicase-exonuclease type V protein family [Methylobacterium
            extorquens AM1]
 gi|240011266|gb|ACS42492.1| putative helicase-exonuclease type V protein family [Methylobacterium
            extorquens AM1]
          Length = 1147

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 92/843 (10%), Positives = 204/843 (24%), Gaps = 68/843 (8%)

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAA 185
            + +     PL   +  A A+     L  +   I    E +   L AL  +          
Sbjct: 321  LDEQARLIPLFDALRAARALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIH---KTL 377

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            D L      W    ++      +           +            A   G+   T   
Sbjct: 378  DLLSRVGASWVLYKLDRGVDHVLV--DEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTR 435

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
               V +         G D              +          S    +  A  +     
Sbjct: 436  F-AVGDPKQSIYSFQGADPREFELTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVD 494

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                V       +   G    +  S        +    I E         ++  A ++A 
Sbjct: 495  AVFGVPDHFAGLSFDAGAPGTVHASARAGVPGAVELWGIEEPAEAEEPDAWA--APVDAP 552

Query: 366  NEREEAISIAIALRMSLDEN-------------KKKSALITADRNLARRVKLELTRFGIN 412
                 AI +A  +  ++                     L+         V   +   G+ 
Sbjct: 553  EPNAPAIVVARRIARAVKTWTTKGDACGRIWRPGDVLILVRKRSAAFEEVIRAMKGLGVP 612

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            +     + ++  +    L ++  A     D + +AT +K PL      +     A+    
Sbjct: 613  VAGQDRLEVAGHIAVLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFA 672

Query: 473  LVALRGNKNSYDIMDLKS----LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                          D  +      L              + + L       + L+     
Sbjct: 673  ETLEDALTRHAQAGDGAAIRGLTALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGG 732

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
            +    +  +                          +       +        G ++    
Sbjct: 733  EAGDAIDVFLAQAADAEN-----------GGDAPCLDAFLADYIVRPGRGRSGLSVKRDL 781

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                     +  +  + ++    ++              L +  T +  L          
Sbjct: 782  ESGRNEVRVMTVHGAKGLEAPVVVVIDGCEPLGRNDPPLLGLDSTADGPLPP-------- 833

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
                VW     ++   +   +S L  +  E++         M     HL+          
Sbjct: 834  ----VWTGGRTQDCAATLAARSALQARAREEHNRL--LYVAMTRAADHLVIAPYRGATRE 887

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL-EAQP 767
               +   + R+ +  G    + ++        W      +          P P       
Sbjct: 888  TPASWCEMVRIGLERGLGDGEAVETDHGPITIWRDGSAASLAAAAADTAPPEPETVPDWL 947

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             + +  E +       +                 D +   RG L H+++  L +    + 
Sbjct: 948  FSAAAPEAEAAPPLSPSGALGAADGQRQPRRRLGDAEARRRGALVHSLLEHLPRIEPARR 1007

Query: 828  TPEINHLMKQ---IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                +   +     ++    K+ +   + +I       +       E             
Sbjct: 1008 AEAADRFARARAPTLEEAKRKDLVRAVLRLIEAPDLAPLFSDQARAEVA----------- 1056

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-AQKLIDPQLSLEAAA 943
            +  ++ +E I   +TG  DR+ +++ G V + D+KTG  P  +    +    Q+SL A  
Sbjct: 1057 LSGRIVVEGIERDVTGRIDRL-VVEDGRVILCDFKTGRPPADDAPLPEREAAQVSLYARL 1115

Query: 944  LKA 946
              A
Sbjct: 1116 AAA 1118


>gi|238764004|ref|ZP_04624960.1| Exodeoxyribonuclease V gamma chain [Yersinia kristensenii ATCC
           33638]
 gi|238697821|gb|EEP90582.1| Exodeoxyribonuclease V gamma chain [Yersinia kristensenii ATCC
           33638]
          Length = 1128

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 89/771 (11%), Positives = 191/771 (24%), Gaps = 92/771 (11%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL+    ++N               + V +    Q L+ +  +     + I 
Sbjct: 11  DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANIE 61

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
                L           +L         S      +L  L+     +L +       +  
Sbjct: 62  ---FPLPATFIWDMFTRVLPGIPKESAFSKDAMTWKLMWLLP----ELLENPVFSAMKRY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191
           LS          LA  +AD+ D            WE    + N      W      L + 
Sbjct: 115 LSDDSDKRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIDNLDDAQQWQA---LLWVE 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249
              +T +L +             +R   E  +        + I G +   P   + +  +
Sbjct: 172 LTRYTRQLAQPEW-HRANLYQRFIRTLLESDVCPAGLPKRVFICGISALPPIYLQALQAL 230

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------- 289
             H +  ++      +    I +                                     
Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYREPAESGTMDVKLFRHPEQADQ 290

Query: 290 ----THPQYSLAKLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKS 330
                  Q     LL        D   L                   N ++G    + + 
Sbjct: 291 LFNDDGEQDLSNPLLASWGRLGRDHMYLLSQVDEIQEVHAFVDIEPDNLLHGVQHDMLEL 350

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NK 386
                      T    ++   ++     ++L    + + E   +   L   L++      
Sbjct: 351 EDHAIIGVTPETLAHSHQKRVLELSDRSLSLHVCHSPQREVEVLQDNLLKLLEDSPDLTP 410

Query: 387 KKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
           +   ++ AD +                  +   IS               +LL+      
Sbjct: 411 RDIIVMVADIDSYTPYIQATFGNATGERYLPFAISDRKASQAHPALQAFITLLDLPQSRF 470

Query: 442 DFMAIATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLV 492
               +  L++ P     F   E  L R +  +    +R   +  ++ +L        +  
Sbjct: 471 TSEQVLALLEVPALANKFGINEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWH 530

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSIS 551
                                    + +  L   +   +   L+     +     + ++S
Sbjct: 531 FGITRMLLGYAMDSSAGDWQGVLPYDESSGLAAELAGQLADMLMQLSQWRQQLSESRALS 590

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
           +W  L    L      ++     L   E  +    + S  I              D +  
Sbjct: 591 EWLPLCRQLLDTFFEPDNDTEAVLVLIE--QQWQKVISYGIAAQYPDIVPLNLLRDELAS 648

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            +D E +  +      +     +  R + F  + L G+N+GV+P+      F   +M   
Sbjct: 649 RLDNERISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMAKQ 705

Query: 672 LNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719
           +      +         E      + L  +   R   +N     S  +  L
Sbjct: 706 VRRGDRSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 756


>gi|284008543|emb|CBA75084.1| exodeoxyribonuclease V gamma subunit [Arsenophonus nasoniae]
          Length = 1057

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 82/733 (11%), Positives = 181/733 (24%), Gaps = 78/733 (10%)

Query: 49  IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
           I V +    Q L+ E  +  G  + I      L           +L         S    
Sbjct: 35  ILVQSPGMSQWLQIELAQSLGIAANIS---FPLPATFIWDMFTRVLPDIPKESAFSKGAM 91

Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-- 166
             +L  ++      L    +       L+  +       L+  +AD+ D       +W  
Sbjct: 92  TWKLMTILPS----LLHESEFEPLRQYLNEDMGKRKLYQLSGRIADLFDQYLVYRPQWLE 147

Query: 167 ----EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               + L          W       L   ++   +             QI  +     H+
Sbjct: 148 NWHKKQLIE-GLSDNQQWQKRLWLALIEYTEKLNQPKWHRANLYQQFIQILQV-NLPSHI 205

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI----------WN 272
                  + I G     P   + ++ +  H +  ++      +    I            
Sbjct: 206 RLP--KRVFICGIAALPPVYLQALNALGQHIDIHLMFTNPCRYYWGDIQSYAFLAKLERR 263

Query: 273 TITEKSTNITSSNTTYSTHP---------QYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
            + +       +     + P         Q+    LL        D     +   +    
Sbjct: 264 KLKDFRDQHEITRFKRESSPDTLFNQQGEQFLTNPLLASWGKLGRDNLYFLSQLEQSNEI 323

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIP---------------NIQKCFSDVALIEADNER 368
           +  +             +   LE+                   + K    +      + +
Sbjct: 324 AAFVDLPCNCLLHQVQSDILDLEDHAQLGLTEASYNNSFLKRQLSKQDKSLTFHSCHSPQ 383

Query: 369 EEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDISAGI 419
            E   +   L    +EN     K   ++ AD +        +      +  +   IS   
Sbjct: 384 REVEVLQDYLLRLFEENPTLTPKDIIVMVADIDCYAPYIQAVFSHVSAKRQLPFSISDRK 443

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRAKNALELVALR 477
                       SLL+          +  L++ P     F   +  L   +  +    +R
Sbjct: 444 ARQVHPILQAFISLLDLPQSRFTTEQVLALLEVPALARRFSIYDDELLLLRRWINESGIR 503

Query: 478 GNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
              N  +I  L+       +                H          +    L   +   
Sbjct: 504 WGLNDENIAMLELPVTGQNTWAFGLNRMLLGYAMDSHIGPWNKILPYDECTGLSAQLAGQ 563

Query: 531 IT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
           +   + +  + ++       +S+W  +    L+     + +      F    +       
Sbjct: 564 LATFIDSLTSWRSILDQERKLSEWLPVCQCLLEAFFETDEQIESIFIF--ILQQWQKTIE 621

Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
             I              D +    D E +  +    + +     +  R + F  + L G+
Sbjct: 622 TGIVAKYEDSVPLSLIRDELVTCFDDEKISQRFLAGA-INFCTLMPMRSIPFKVVCLLGM 680

Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTR--SLREN 706
           N+ ++P++     F   +M         ++         E  N    L   +       +
Sbjct: 681 NDRIYPRSIPPLGF--DLMAEQPQRGDRKRRDDDRYLFLEALNSASQLFYLSYIGHAMRD 738

Query: 707 NIPTIASRWLQRL 719
           N P   S  +  L
Sbjct: 739 NQPHNPSVLVNEL 751


>gi|254388945|ref|ZP_05004176.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197702663|gb|EDY48475.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 1162

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 73/666 (10%), Positives = 169/666 (25%), Gaps = 54/666 (8%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII----KSLGDVV---EEKFT 90
               +    V     T +A  EL         +     P      +  G+        F 
Sbjct: 21  GTGQVAPEQVLGLTFTNKAAGELAERVRTALVRAGVTDPDAIDPDRPPGEPRISTYHAFA 80

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL  + L   +    RLL  A    +    L           P   P    +   L  
Sbjct: 81  GQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAA--------PGPYPALTRSFSTLVG 132

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKY---------------GMWWLLAADFLKIASKYW 195
           +L  +   +     + E L A   E                       A   L+     +
Sbjct: 133 DLLALDAELSEHLVRPELLAAHDEELLETLASASLTNADLRRLPEAAAARRELRGLVLRY 192

Query: 196 TERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                                 AL R     L++     +++     +  A   L+S + 
Sbjct: 193 RAAKRSRELLDFGDQIALSAELALTRPAVGTLLRDEYRVVLLDEYQDTSVAQRLLLSGLF 252

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
               G  V    D       W   +  + +    +  Y      +   L           
Sbjct: 253 GQGTGHAVTAVGDPCQAIYGWRGASVANLDDFPIHFPYRDGTPAARYSL----------- 301

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                 S        ++  +          +  +   +     +    V +       EE
Sbjct: 302 ------SENRRSGGRLLQLANGLAAPLRAMHEGVEALRPAPGAERDGSVRVALLPTHAEE 355

Query: 371 AISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
              +A ++   +  +K     A++         ++  L    I +++     L      +
Sbjct: 356 IDWLADSIARLVRADKAPGEIAVLCRTATDFPEIQAALVARDIPVEVVGLSGLLHLPEVA 415

Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            L ++   +       ++  L+  P  + G  +  L   +  L +    G+ +   + + 
Sbjct: 416 DLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRDSGHDDGAGLAER 475

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
            +  ++     +  +    + + +     +  +            L         +  + 
Sbjct: 476 LAAAVEGTDPAEVISLADGFDAFIDPAGADDGLPFSGEARVRFAHLARELRELRRSLADP 535

Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            +    ++  T   +V L    +       E       + +            A      
Sbjct: 536 LMDVLHRVLSTTGLDVELSASPRALAARRRETLGNFLDIAAGFAALDGEASLLAFLGFLR 595

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
                +           +T+ +L   +S+ L +D + + GL  G +P + A+  + +   
Sbjct: 596 TAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLTAGSFPSDRAREAWTAHPQ 655

Query: 669 QSDLNL 674
                L
Sbjct: 656 VLPHAL 661



 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 73/267 (27%), Gaps = 37/267 (13%)

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
            G         +  +    W R L    ++    R          P   + S++ +L  DP
Sbjct: 907  GPDGPEPLTPEELRAIASWDRDLTALAQELRGARASVH--EVPLPPALTASQLMRLAADP 964

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                AR + +    P          RGT FH  +    ++                    
Sbjct: 965  DGF-ARELARPMPRPPQ----PAARRGTRFHAWVESRFEELPLPLLGPDEL--------P 1011

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                + P   DI        +  +F       +       V  P ++ +      + G  
Sbjct: 1012 GGDLDGPDLADIADEEDLAALKEAFERTPYARR---TPHRVESPFQITLAGR--VVRGRI 1066

Query: 903  DRIDLL--KSG------FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
            D +       G        +I D+KTG              QL++   A        +D 
Sbjct: 1067 DAVYRTTAADGPATSPARYEIVDWKTGAA------AAADPLQLAVYRLAWAEQ--HGLDP 1118

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKY 981
             +V +  ++ ++    +   +   +  
Sbjct: 1119 EEV-DAAFVFVRSGEVVRPQSLPGRAE 1144


>gi|123443512|ref|YP_001007485.1| exonuclease V subunit gamma [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090473|emb|CAL13341.1| exodeoxyribonuclease V gamma chain [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 1123

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 90/766 (11%), Positives = 193/766 (25%), Gaps = 87/766 (11%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL+    ++N               + V +    Q L+ +  +     + I 
Sbjct: 11  DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANIE 61

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
                L      +    +L         S      +L  L+      L +       +  
Sbjct: 62  ---FPLPATFIWEMFTRVLPGIPKESAFSKDAMTWKLMWLLP----DLLENPVFSAMKRY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191
           LS          LA  +AD+ D            WE    + N      W      L + 
Sbjct: 115 LSDDSDKRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIDNLDDAQQWQA---LLWVE 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249
              +T +L +             +R   E  +  T     + I G +   P   + +  +
Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIRTLLESDVCPTGLPKRVFICGISALPPIYLQALQAL 230

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------T 290
             H +  ++      +    I +                                     
Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYRESVEVKLFRDPEQAEQLFNAD 290

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPD 335
             Q     LL        D   L +  +E+      +                +      
Sbjct: 291 GEQDLSNPLLASWGRLGRDHMYLLSQVDEIQEVHAFVDIEPDNLLHGIQHDMLELEDHAI 350

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSAL 391
                 T    ++   +      +++    + + E   +   L   L+ +     +   +
Sbjct: 351 IGTTPETLAHSHQKRVLDLRDRSLSMHVCHSPQREVEVLQDNLLRLLEADPELTPRDIIV 410

Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
           + AD +                  +   IS               SLL+          +
Sbjct: 411 MVADIDSYTPYIQATFGNATGDRYLPFAISDRKASQAHPALQAFISLLDLPQSRFTSEQV 470

Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497
             L++ P+    F   E  L R +  +    +R   +  ++ +L        +       
Sbjct: 471 LALLEVPVLANKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWHFGLTR 530

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556
                    +          + +  L   +   +   L+     +     + S+S+W  L
Sbjct: 531 MLLGYAMDSNAGDWQGVLPYDESSGLAAELAGQLADMLMQLSQWRQQLSESRSLSEWLPL 590

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L      ++     L   E  +    + S  I              D +   +D E
Sbjct: 591 CRQLLDTFFEPDNDTEAVLVLIE--QQWQKVISYGIAAQYPDIVPLNLLRDELASRLDNE 648

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P+      F   +M   +    
Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMAKQVRRGD 705

Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719
             +         E      + L  +   R   +N     S  +  L
Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 751


>gi|159039658|ref|YP_001538911.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
 gi|157918493|gb|ABV99920.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
          Length = 1162

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 101/1006 (10%), Positives = 215/1006 (21%), Gaps = 154/1006 (15%)

Query: 46   SVTIYVPTKRAIQELRSEFIEIT---------------GKKSTILPIIKSLGDVVEEKFT 90
             V     T++A  EL                        +     P I +         T
Sbjct: 83   QVLGLTFTRKAAGELAHRVRARLSQLVRRLGRRGRDPQDESLAGEPTIATYHSYAGRVVT 142

Query: 91   ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
               L +           RLL  A       + +         E            + LA 
Sbjct: 143  EHGLRAG-----YEPATRLLTEASRWQ-LVDLIVRNYDGDMSEVDRMPSTITDAVLALAG 196

Query: 151  NLADIIDI----IETEEKKWEDLH------ALKNEKYGMWWLLAADFLKIASKYWTERLV 200
             L + +           + + D+            +      +    L +  + +  R  
Sbjct: 197  ELDEHLVEPDHLAGWTGRFFADVQSRPGRVYADVRRALTLQQIRLKLLPLV-RAYARRKR 255

Query: 201  ELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
            +  A           R   +H     + +     +++     +  A   L++ +     G
Sbjct: 256  DFEAMDFADQLARAARVARDHPVVGEIERDRYRVVLLDEYQDTSHAQVVLLNALFG--GG 313

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
              V    D       W   +  + +   +    +      +  L      + E +     
Sbjct: 314  HPVTAVGDPCQSIYGWRGASAGTLDRFPTEFARADGVPAQVRTLTTSWRNRPEVLGVANA 373

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
            ++  +      + +        +                    V     D   +EA  IA
Sbjct: 374  LATPLRAAGARVPELHAALSVKEPIPHRTPRGS------AAGTVHCALLDTYADEAEWIA 427

Query: 376  IALRMSLD---------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
             +L  +                   +  +A++   R+    ++  L   G+ +D+     
Sbjct: 428  DSLLRAWQGAAGAPGAVPEHLPVAARPTTAVLVRLRSQIPAIESALRARGLPVDVVGLGG 487

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L  T     +   L  +    D  A+  L+     + G  +      +      A R   
Sbjct: 488  LLDTPEVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRARAIAAARRKLT 547

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
               +   +   +    AT              S E           +      L     +
Sbjct: 548  AGDEPEIVPDALD--EATLVEALADLGPAPAYSAEGYARFRAAAQELGLLRYRLDQSLPD 605

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
              +        D                  +       +     S       ET     +
Sbjct: 606  LIADVERTIGLDVEVAVRAGRDGAGDAGLARGHLDALGDVAARFSG------ETPGATLS 659

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
              + ++        G            + +L    ++ L +D + + GL+ GVWP     
Sbjct: 660  AFLAYLAAAEDEERGLAPGEVEVVEGAVQVLTAHAAKGLEWDVVAVAGLSRGVWPGPVRN 719

Query: 661  NPFL------------------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
            +                               Q  +    A+      AHD        +
Sbjct: 720  SDHWLGGLGVLPFPLRGDADGLPVLELAEAGEQRGVAQALADFTAAWRAHDEREERRLAY 779

Query: 697  LIYTRSLR-----------ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
            +  TR  R                   S  L+ +           +              
Sbjct: 780  VAVTRPRRLLLCSGYWWGEGTKRARGPSALLRDVHGACLDAGAGLVVDEWAAEPAPDAVN 839

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY---------------------- 783
              T      + P             + + +++ + D                        
Sbjct: 840  PTTEVVLRAEWPADPLGDRRPALAEAATLVRRFLTDGDPTTRAATGAVATAAPGDDDAED 899

Query: 784  ------AVYARRILKLDFIPHFKK---------------------DPDRTDRGTLFHNII 816
                         L L       +                       D           +
Sbjct: 900  DDPEVVRWRREADLLLAERAELTRHAGPVEVALPAALSVTQLVALRRDPAALARSLRRPL 959

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
                     + T     L ++         +  P            ++           +
Sbjct: 960  PTEPNPYARRGTAFHAWLEQRFGAGRLLDVDELPGAADADAAPDEALAELQERFLHSEWA 1019

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
                +   +P    I   G+ + G  D +     G  D+ D+KTG 
Sbjct: 1020 DRTPVEAEVPFATVIA--GVVVRGRMDAVFGRPGGRFDVVDWKTGR 1063


>gi|190151240|ref|YP_001969765.1| exodeoxyribonuclease V subunit gamma [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307264591|ref|ZP_07546173.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189916371|gb|ACE62623.1| Exodeoxyribonuclease V gamma chain [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870054|gb|EFN01816.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 1114

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 85/786 (10%), Positives = 198/786 (25%), Gaps = 93/786 (11%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
           + ALL      +   +P  P      T+ V +    Q L+ +  + TG  +         
Sbjct: 13  LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 59

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134
                   T+ L   Y +  P    + + E       L RLI  +  K     + L    
Sbjct: 60  --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 115

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180
                  P     LA  +AD+ D        W              E L A+   +    
Sbjct: 116 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 174

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228
                  L+  S  W   + ++ A S                    +    E        
Sbjct: 175 -RDILANLRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 233

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281
            I + G +        ++  ++ +    +                       +  + +  
Sbjct: 234 RIFVFGISSLPATQLAVLKKLSENCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQ 293

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                      Q     L  +    RE + +L     +         +            
Sbjct: 294 DLDALLAEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 349

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397
            +    +   + +    + +    +   E   +   L    + N     K   +++AD +
Sbjct: 350 LNFNNEQRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 409

Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
                   +        +  I   +S     +     +    LLN         ++  L+
Sbjct: 410 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 469

Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                         +    R       +    +    D  +  +            +   
Sbjct: 470 DVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 529

Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                        +  L   ++  +   +            + ++ +W       +    
Sbjct: 530 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 585

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623
                   +    +    L+S   ++       + +    I+II  L++ +  + +    
Sbjct: 586 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 643

Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
             +  +     L  R + F  + L G+NE  +P+  + N F   +MQ         +   
Sbjct: 644 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 701

Query: 683 QAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                 E     + +   +       +N   + S  + +LL        +  + +     
Sbjct: 702 DRYLFLEALLSAQEIFYLSYIGQSATDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 761

Query: 740 DWTRKL 745
           +++  L
Sbjct: 762 NFSEAL 767


>gi|158321322|ref|YP_001513829.1| ATP-dependent nuclease subunit AddB [Alkaliphilus oremlandii OhILAs]
 gi|251764576|sp|A8MJ51|ADDB_ALKOO RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|158141521|gb|ABW19833.1| ATP-dependent nuclease subunit AddB [Alkaliphilus oremlandii OhILAs]
          Length = 1144

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 78/253 (30%), Gaps = 36/253 (14%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK---N 827
            S S +++  N P++ +    L+       +      D G LFH+ +    K+ +N+    
Sbjct: 774  SVSRLERFANCPFSHFVTYGLRPKERK--EYQLSNPDIGRLFHDSMENFTKELVNEQIQW 831

Query: 828  TPEINHLMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHS--FLEHEEKIQSS 877
                       ++   ++             H          +IS    +   E   +  
Sbjct: 832  KDLTREQSDYFVEKVIDEMVPEFEHGIMLSTHRYQYLVTRLKRISKRAMWTLTEHIKKGQ 891

Query: 878  IEKIFVNIPAKMAIESIGIH----------LTGFADRIDL--LKSGFVD-ITDYKTGDNP 924
               +   I   +  +   I           L G  DR+D+   + G    I DYK+G   
Sbjct: 892  FVPMGHEIIFGLEGDIPPIVIELESGEKIYLEGRIDRVDILNDEDGNYVKIIDYKSGSKE 951

Query: 925  -KKETAQKLIDPQLSLEAAALKAGSFSQIDCR-KVANLFYIRLKQKFKIDCITNDKKKYS 982
                        QL +   A+ +    +         +FY      FKID       + +
Sbjct: 952  FSLSDVYYGFQIQLLVYLDAVLSSQSQKYQAEVHPGGIFY------FKIDDPMVKTTEKA 1005

Query: 983  ADELSEKSLKNLI 995
              E+ ++  K L 
Sbjct: 1006 VKEVEKEINKRLK 1018


>gi|114326567|ref|YP_743726.1| UvrD/REP helicase [Nitrosomonas eutropha C91]
 gi|114326628|ref|YP_743786.1| UvrD/REP helicase [Nitrosomonas eutropha C91]
 gi|114309506|gb|ABI60748.1| UvrD/REP helicase [Nitrosomonas eutropha C91]
 gi|114309567|gb|ABI60808.1| UvrD/REP helicase [Nitrosomonas eutropha C91]
          Length = 971

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 117/1050 (11%), Positives = 258/1050 (24%), Gaps = 136/1050 (12%)

Query: 1    MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
            +    P +    P S     ++       +      + + P  L    +   T +A +EL
Sbjct: 21   LATDGPVLIIAGPGSGKTFTLVE-----RIAYLITQEGVAPESL---FVVTFTDKAAREL 72

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
             +                 +L ++    F +  L         + ++R   L       +
Sbjct: 73   TTRISNRLTNLGIK----FNLNEMYLGTFHSICLRLLEDFREFTWLKRSFTLFDQFDQ-Q 127

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWL--AKNLADIIDIIETEEKKWEDLHALKNEKYG 178
              L   IKD        L +          ++NL   ++ +  E      L A    +  
Sbjct: 128  YFLYQHIKDFRELPDAQLVMGDDQTGRWMQSENLLKWVNKVREEALDATTLTAAPELEIC 187

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIA 233
                     L      + E L E N+    G Q   +R   +        +     +++ 
Sbjct: 188  A--------LATCFAKYQELLHEHNSLDFSGIQYEALRLLEKRPEVLAQLRERLTHLMVD 239

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
                +     R++  +A       V+   D       +   T ++     S  T     Q
Sbjct: 240  EYQDTNTIQERILLLLAGENKNLCVV--GDDDQGLYRFRGATIRNILEFPSLFTDDQCKQ 297

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
              L                         G  +      + P        +    ++P   
Sbjct: 298  VKLTVNYRSHPDIIRFYNEWMKEQVWDDGTRVFRFAKQIVPC-------EDDFPEMPTAV 350

Query: 354  KCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSALITADRNLARRVKLE-LTRFG 410
            +  +     E  N   E ++    L+    L +  + + L  + +N         L   G
Sbjct: 351  RLAASNDNGETTNWHAEVLAFLNGLKASGKLADWNQVAFLFRSVKNDKVVALARFLEAQG 410

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +               ++               I  L+   L       +  +     
Sbjct: 411  VPVFSPRSNMFFEREEIRLM---------------IGALIF--LFPQFPKVRAWAEGVTL 453

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                            +L+                       +    +   +L  +    
Sbjct: 454  PIWDYYDHQCFKPFTDELRK-------------PENKPLLDWARPLAKRHAVLAQNTDYA 500

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
             + L             L+     +      +            L  + E     S+ + 
Sbjct: 501  FSGLFYQLFQFPLFSHFLT----EEAAQGVDKGRAARNLGTFSKLLTKFEYLHFVSVLNP 556

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
                 +           +    I     + +      +  L   +S+ L F  ++ G L 
Sbjct: 557  SFLEKNIRDLFNQFLRFLQDGGIGEYEDEAEYAPKGCISFLTIHQSKGLEFPVVVCGSLE 616

Query: 651  EGVWPKNTAKNPFL---SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
                 + +A +  L     + +         K        +   +  ++L+   +  +  
Sbjct: 617  AVPRKQYSALDVLLEDGGYLSKERFEPLDHIKNFDFWRLFYTAFSRAQNLLVLAAQEKQG 676

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                 S++ +RL              R       T               +    +  + 
Sbjct: 677  RGKSPSKYFERLFYEL-------PSWRDVDLSALT--------------YEAVKQINLKR 715

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK-RINK 826
                 S I    N        + L+   I            GTL H  I ++ K     +
Sbjct: 716  EYSFTSHIAVFENCAEQYRFFKELEFAPIRE-----SPMLFGTLVHQTIEDIHKTVLRGE 770

Query: 827  NTPEINHLMK-------QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                    +K        ++         P        H+       + E E    + I+
Sbjct: 771  EGSITLDGIKGWFSANYAMLSKKERVYLAPSSQQAALLHVL-----RYFERENGNWNRIK 825

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK---KETAQKLIDPQ 936
                    ++++      L G  D I   +   V+I D+K+   P         +    Q
Sbjct: 826  ----EAEVEISLVKDQYILKGSVDLI-RGEHDTVEIIDFKSEKKPDMERDRDRLRQYQSQ 880

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L + A  ++  +  ++       L+Y            + D      D    K++    +
Sbjct: 881  LEVYAHLVEKRTGQKVSRMH---LYYTGEDGGTPYVSFSKD------DRAIGKTIARFDD 931

Query: 997  IVTLLQNGEQPFISHLR---LSEKSNIQSE 1023
            IV  ++  +    +      LS       +
Sbjct: 932  IVARIERQDYGIATRPAKLCLSCDMRAYCD 961


>gi|295836625|ref|ZP_06823558.1| UvrD/Rep family helicase [Streptomyces sp. SPB74]
 gi|197699603|gb|EDY46536.1| UvrD/Rep family helicase [Streptomyces sp. SPB74]
          Length = 1221

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 68/653 (10%), Positives = 145/653 (22%), Gaps = 58/653 (8%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV---------EEKFTADLLLS 96
            V     T +A  EL         +     P                     F   LL  
Sbjct: 156 QVLGLTFTNKAAAELADRVRRSLVRAGFSDPGAPPAPGAELPGEPLISTYHSFAGRLLDD 215

Query: 97  YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156
           + L   +    RLL  A    +    L +         P   P        L  +L  + 
Sbjct: 216 HGLRLGLEPGSRLLADASRFQLAARVLREA--------PGPYPALTRGFSDLVSDLLALD 267

Query: 157 DIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYWTERLVE 201
             +         L     E                       A   L   +  +      
Sbjct: 268 GELSEHLVDPAALSRYDEELLRTLAGARLSNDQLRKVPEAAAARLALTELTGRYRAAKRA 327

Query: 202 LNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            +            R   EH       +     +++     +  A   L++ +     G 
Sbjct: 328 RDLIDFGDQLALSARLAREHPEVGETLRAQYRVVLLDEYQDTSVAQRVLLAALFGGGTGH 387

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V    D       W   +  + +    +  +          L                 
Sbjct: 388 PVTAVGDPCQAIYGWRGASVANLDDFPRHFPHPDGTPARRQSL----------------- 430

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           S        +++ +          +  +     P  +     V         EE   +A 
Sbjct: 431 SENRRSGGRLLALANDLAAPLRALHDGVEALHAPAGKAADGFVRCALLPTHAEEIDWLAD 490

Query: 377 ALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +   +         A++        R++  L    I +++     L      + L ++ 
Sbjct: 491 RVAHYVRTGTDPGEIAVLCRTAGDFSRIQAALVAREIPVEVVGLSGLLHLPEIADLRAVC 550

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
             +       ++  L+  P  + G  +  L         +A            L + V  
Sbjct: 551 EVLQDPGANASLVRLLTGPRWRIGARDLALL--GRRARFLAGGRTGEDDPARRLAAAVEG 608

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               +  +             D E  +            L            +  +    
Sbjct: 609 IDPAEIVSLADAVDTFVEGGPDAEDGLPFSTGARTRFARLGRELRELRRALADPLMDVLH 668

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           ++      +V L            E         +            A           +
Sbjct: 669 RVLAATGLDVELSASPNALAARRRETLGQFLDTAASFAANEPAASLLAFLGYLRTAEQYE 728

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                      +T+ +L   +++ L +D + + GL +  +P +  +  F +R 
Sbjct: 729 KGLDNALPGGENTVKVLTAHKAKGLEWDIVAVPGLVKAQFPSDRGRERFTARA 781



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 60/628 (9%), Positives = 150/628 (23%), Gaps = 46/628 (7%)

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
            R++        A I +  +               +  S G           L  L  A+ 
Sbjct: 601  RLAAAVEGIDPAEIVSLADAVDTFVEGGPDAEDGLPFSTGARTRFARLGRELRELRRALA 660

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                 +    L    L            A+    L        S+   +  + +L  +  
Sbjct: 661  DPLMDVLHRVLAATGLDVELSASPNALAARRRETLGQFLDTAASFAANEPAASLLAFLGY 720

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT--PLVTYKTNKNSTCGNLSISDWTKL 556
             +                +    +L  H  + +    +      K     +     +T  
Sbjct: 721  LRTAEQYEKGLDNALPGGENTVKVLTAHKAKGLEWDIVAVPGLVKAQFPSDRGRERFTAR 780

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                   +  D         +  +G        +  ++   ++   + +    + L+   
Sbjct: 781  ASVLPHPLRGDAATLPEVPAWTAKGLKAFQDDMREHQSTEELRLGYVTFTRPRSLLLGSG 840

Query: 617  TVKPK---IEKSSTLFILGTLESRLL---NFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
                      +  + F+    +         +        E   P     +P    +   
Sbjct: 841  HWWGPEQKRPRGPSAFLTALHDHCARGHGEIEHWAEPPGPEDENPALRDTDPLPWPLPLD 900

Query: 671  DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR------LLVLGG 724
                        +  H   +              E+                   +    
Sbjct: 901  PAAHARRRAAAARVEHHLALLQHPADPPRPDEPPEDPYEDGPDPDPYEEAPPAPRVPAPA 960

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                D   +  +    W R LD    +   +R          P + + +++ +L  DP  
Sbjct: 961  PHGEDLTSEESRLLGSWDRDLDALEGE--LRRAAASVREVPLPPSLTATQVLRLAEDPDG 1018

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                 + +    P  +       RG  FH  +   +     +    +             
Sbjct: 1019 -----LARDLARPLPQAPKPAARRGARFHAWLERRLTAGHEQPRLPLPDE---------G 1064

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
            +       +I       ++  +F       + +     V +P ++++      + G  D 
Sbjct: 1065 EPEPREDAEISDDLDLEELKEAFERTPYAHRPAHR---VEVPFQLSLAGR--VVRGRIDA 1119

Query: 905  I---DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
            +   D       +I D+KTG         +    QL++   A        I   ++A   
Sbjct: 1120 VYAHDEDGRRRYEIVDWKTGR-----DRARADPLQLAVYRLAWAE--RHGIAPEEIA-AA 1171

Query: 962  YIRLKQKFKIDCITNDKKKYSADELSEK 989
            ++ ++    +       +       +E+
Sbjct: 1172 FVFVRTGETVRPTRLPGRAELERLFAEE 1199


>gi|254361418|ref|ZP_04977559.1| exodeoxyribonuclease V [Mannheimia haemolytica PHL213]
 gi|261495601|ref|ZP_05992047.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153092924|gb|EDN73955.1| exodeoxyribonuclease V [Mannheimia haemolytica PHL213]
 gi|261308708|gb|EEY09965.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 1096

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 98/967 (10%), Positives = 235/967 (24%), Gaps = 131/967 (13%)

Query: 21  MIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS 80
           +   L+    V     DP  P      TI + ++   Q L+ +  E+ G           
Sbjct: 13  LAEMLVKIQQVNPLE-DPFEPE-----TILIQSQGMAQWLQMQIAELNG----------V 56

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
           +G+      T  L   Y L  P    + + E + L+      LP  +             
Sbjct: 57  MGNCDFLYPTTFLWQQYRLLFPELPKENIFERSSLVWRIMRLLPSCLTLSEFAPLKRYLG 116

Query: 141 S-------PANAIWLAKNLADIIDIIETEE----KKWE---------------------- 167
                         L+  +A++ D            WE                      
Sbjct: 117 DQPNKEQYQLKLYQLSAKIAELFDQYLVYRPHWLVSWEEGNLQAIENEIKIATAAKPIDF 176

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
           DL     +     W      L+  S    +     + +       A +    E       
Sbjct: 177 DLIRADMKWQSHLWQQIVSDLQSESD--EQVFTTSHRAYLQQNYFAKLDDLTETEKAKLP 234

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP-----TAIWNTITEKSTNIT 282
             I I G +   P    +   ++ H +  +                 +W  +    ++  
Sbjct: 235 KRIFIFGISSFSPLQLAVFKKLSEHCDIHLFFFNPSEKYWGDSVEEKVWQKL--ALSHKI 292

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
           S +   +   +     L  +    R+ + +L           +   ++           +
Sbjct: 293 SQDDLDNLLAEQRNKLLNLWGKQGRDFLAQLIEFEPNTMDVFVEPEENSNLNKLKKQIFS 352

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
              +  I ++    + + +    +   E   +   L    +++     K   +++ D N 
Sbjct: 353 LENDATITDLT-ADNSLQIHSCHSPMREVEVLHNQLLNLFEQDSTLLPKDIIVMSPDINK 411

Query: 399 ARRVKLEL---------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                  +             I   +S                LL       +   +  L
Sbjct: 412 YAPYIDAVFSRYNTGNRDPRYIPFSLSDQAFTQVDPIIHSFLQLLAMKESPFNAEELFDL 471

Query: 450 VK----HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++         F   + +  R       V            +  S           ++  
Sbjct: 472 LEVNAIQTRFGFSTEDIHTLRVWVRNAGVRSGVEIEQPHWQNYNSWENGLNRLLLGSSLK 531

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                  +      +  L   ++  +   +       N       ++ W +         
Sbjct: 532 EEQGIWENTLAFGDSYGLNAELVGRLASFIEALLAWVNFLQTPQPLAAWQQAIKNL---- 587

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                    N         L+++  +IIE  S    +    I+++  L + +  +   + 
Sbjct: 588 --TADLYQENAENAASILLLNNVNDQIIEQISATHFSDDLQIEVLALLFEQQLSQHSQQL 645

Query: 625 S---STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
           +     +     L  R + F  + L G+NE  +P+    N F           +      
Sbjct: 646 NFLVGRVNFATLLPMRAIPFKVICLLGMNEADFPRQQQINSFDLMQYAPKKGDRAKRDDD 705

Query: 682 GQAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                  E     + +   +     +++    + S  + +LL           K   Q  
Sbjct: 706 RY--LFLEALLSAQQMFYISYIGQSQKDGKEMLPSILVSQLLDAMNEALTPECK---QQL 760

Query: 739 LDWTRKLDYTT-------------------------KQPHYKRPKPFPPLEAQPRTYSFS 773
            D    L                                  +     P       +    
Sbjct: 761 SDEVEVLVRKQPLSVFSKKNFTHPRDHAYNAEWIIKPTVAVQDFLSEPLTNESVASLELD 820

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
           E+   + +P   +  ++L +     +    D ++   +       ++ + +  N  +   
Sbjct: 821 ELISFVQNPIRFFFLKVLGIS-FNTYDDTIDESEIFEMSGLDNYRILNELLTINLAQQQR 879

Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLF-------HKISHSFLEHEEKIQSSIEKIFVNIP 886
                 +   +      +   I                  +L  E +I S   ++ +   
Sbjct: 880 FF---AEEQLKGNLPASYFAQIATQDLIGKITEMQAALSHYLASESRILSVNREVELE-R 935

Query: 887 AKMAIES 893
             + +  
Sbjct: 936 QTLTLNG 942


>gi|298345280|ref|YP_003717967.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
 gi|298235341|gb|ADI66473.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
          Length = 1164

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 117/1046 (11%), Positives = 263/1046 (25%), Gaps = 120/1046 (11%)

Query: 45   ASVTIYVPTKRAIQELRSE---FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              + +  P   A + L          +     +L    S G V E     +        P
Sbjct: 71   PRMLVLSPNAGAARRLSERALEIRAQSEDPGCLL--GVSKGFVAEVFARFNQWRKAEGLP 128

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             V    RL   A +++  ++ L  +  +           +        ++L D I  +  
Sbjct: 129  EV----RLATDAEVMVQIQDFLAGMPLE-------EELRAALETQGFRRDLVDGIFRVRA 177

Query: 162  E--EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
               +   +   +  +              +       +    L+ +S     +  ++A A
Sbjct: 178  FAGDVSSDSAASPVHPLVTRLIQAMQADREAKRSQARQSAWPLDTASLFEEYLLAVKAGA 237

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                      + I            ++S  A   +G  ++           +   +   +
Sbjct: 238  -----PVPELVGIDDLQNFNGLMIDILSLWA--THGTTLVACTLPETCVNTFRGASPHLS 290

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                                ++ L  +      L         R  V   S    ++   
Sbjct: 291  ERLWQQLETIPG-----KGAIEILLTQEHVPAPLRQAWRIAVNRLGVHGISARLWNSIQE 345

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITA 394
             +    E            + L+E   +  +   I   L+ +   + +       A++T 
Sbjct: 346  SSPASTETDSLCDADGRDRIILVEKSTDTAQYQEIGTLLQDAHIFSDRPLKYSQMAVLTR 405

Query: 395  DRNLARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFK------LNDFMAIA 447
                AR+V   L    I + +      L+    +  L  ++ A+            + +A
Sbjct: 406  SSREARQVAEVLENMDIPVVVPGATGQLNEGRLTRYLLKMMQAVCVEDCDQVKLSDLDLA 465

Query: 448  TLVKHPLAKFG-------FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             L+   L  +            Y  R +   +     G+    D  D        I    
Sbjct: 466  GLLSSALVGWDVWRMRRMDSSLYDLRLQPPADSENAAGSTGVMDSADTADDEEGGIQIVG 525

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
            N  ++  +  ++     + +   V  I+  I           +             +V  
Sbjct: 526  NLPYIQQFLRQVISGQNDFSGRSVAEIISAIPDAAQLVDLAQALRSGWQQWKADSGSVQL 585

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-------- 612
            L     D   +   L        L       ++    +  +  +  D             
Sbjct: 586  LLWKLWDGLGRGEILQARALQPGLVPAVRSTLQIDLDLVMDLFKAADWFEARNPGKTAAD 645

Query: 613  ---------IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                     +   TV P       + ++    +   ++  + + GL +G WP        
Sbjct: 646  FAQGMLARDLPTGTVAPHHLVKDAVTVVSAAATVSQHWPLVAVVGLTDGNWPAMRWPGSI 705

Query: 664  LSRVM--QSDLNLKTAEKYIGQ-------AAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
            L   M    +    T     G          H F         +   +  ++ +      
Sbjct: 706  LGSSMFELENYGDPTNSSSAGYLWNWQNEYRHFFTALTRCTQRLILGTTAQDGVGRSTFL 765

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKR----- 756
                  +         L    + ++ + R              +D  T      +     
Sbjct: 766  TSLVQTLQLEPKQHRRLPTNLRDFVAYLRAACLGGETSWGTPTIDAPTAAGLLAKLAAGD 825

Query: 757  -PKPFPPLEAQPRTYS------------FSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
             P   P         S             S +++ + +P            +        
Sbjct: 826  CPSAHPENWMGALPVSGDETESAEIHIYASGLERALENPLDYVLSWS---GYSNDEDDPY 882

Query: 804  DRTDRGTLFHNIIT----ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
                 G + H            +            +   +     +   P   +      
Sbjct: 883  AANKVGNIVHEAAEILGRRYWWEGHGPRDDLEFEQVLTELRQEVRRLLGPLSGETWVESN 942

Query: 860  FHKISHSFLEHEEKIQSSIE-KIFVNIPAKMAIES----IGIHLTGFADRIDLLKSGFVD 914
            F +   + L        + +      +     +E+      +      DR+ +   G V 
Sbjct: 943  FRRHIETCLVPLATFLVNHQYPSRFEVRYPCRLEASSGKGALVYNARIDRV-MFAHGRVI 1001

Query: 915  ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
            I DYKTG+      A+   + QL+L  AA  A    Q     +A +  +++    K    
Sbjct: 1002 IMDYKTGNPSNFSAAKVAANLQLALYQAAYNASPDGQKQPCDMAEIVALQVPPDSKKLYA 1061

Query: 975  T-NDKKKYSADELSEKSLKNLIEIVT 999
            T   ++        ++SL++  E++ 
Sbjct: 1062 THGIEEPREPKVWVQQSLESGTEVIA 1087


>gi|215405209|ref|ZP_03417390.1| putative ATP-dependent DNA helicase [Mycobacterium tuberculosis
           02_1987]
 gi|289747016|ref|ZP_06506394.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
 gi|289687544|gb|EFD55032.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
          Length = 522

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/476 (12%), Positives = 114/476 (23%), Gaps = 46/476 (9%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-- 70
           P +     ++ A +             +P     V +   + R     RS       +  
Sbjct: 27  PGTGKSTLLVEAAVAHIG------AGTDPES---VLLLTGSGRMGMRARSALTTALLRSR 77

Query: 71  ------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
                  +   P+++++              + +  P      RLL  A    I R  L 
Sbjct: 78  TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALP------RLLTSAEQDAIIRELLA 131

Query: 125 DIIKDLYP--ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
              +D      +  +           A  L +++           +L  L   +    W+
Sbjct: 132 GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWI 191

Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
            A  F +   +              V      +   A            + G+     A 
Sbjct: 192 AAGQFAQRYEQ--------------VMLLRGAVGLAAPQATAPALSAAELVGAALEAFAV 237

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA--KLL 300
              +          +++       P A        +    +          +     +  
Sbjct: 238 DPELLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPT 297

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFSDV 359
             L             S  +                   R     +  +I         V
Sbjct: 298 GLLADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSV 357

Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS 416
            +  A +   EA  IA ALR +   +       A+I      A R+   L   G+ +   
Sbjct: 358 TVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPP 417

Query: 417 A-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
           A G PLS       L ++L A     D      L+  P+           R     
Sbjct: 418 AVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQR 473


>gi|291454013|ref|ZP_06593403.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
 gi|291356962|gb|EFE83864.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 1201

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/673 (9%), Positives = 166/673 (24%), Gaps = 64/673 (9%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV------------ 85
               +    V     T +A  EL     +   +     P   +                 
Sbjct: 67  GTGQVAPEQVLGLTFTNKAAGELAERVRKALTEAGVTEPEPLAPPGAGPQDEHTPGEPVI 126

Query: 86  --EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                F   LL  + L   +    RLL  A    +    L +         P + P    
Sbjct: 127 STYHAFAGRLLTDHGLRLGLEPSTRLLADATRFQLAARVLREA--------PGAHPALTR 178

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---------------GMWWLLAADFL 188
           +   L  +L  +   +       + L     +                       A   L
Sbjct: 179 SFPDLVGDLLALDGELSEHLVTPDRLRHHDEDLLGTLESTPLTNPDLRKLPEVARARHDL 238

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATA 243
               + +     + +                 H     L++     +++     +  A  
Sbjct: 239 AGLVEQYRSAKRDRDLIDFGDQIALSATLADRHPAVGALLREEFRVVLLDEYQDTSVAQR 298

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            L++ +  H  G  V    D       W   +  + +    +  ++     +   L    
Sbjct: 299 ILLAGLFGHGTGHPVTAVGDPCQAIYGWRGASVANLDDFPDHFPHADGTPAARHSL---- 354

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                        S        ++  +          +T +   +     +    V    
Sbjct: 355 -------------SENRRSGGRLLDLANTMAAPLRAMHTGVEALRPAPGAERDGIVRCAL 401

Query: 364 ADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            D   +E   +A  +   +       + A++         ++  L    + +++     L
Sbjct: 402 LDTHADELTWLADRIAHLVATGTPPGEIAVLCRTAGDFGAIQSALVDRDVPVEVVGLSGL 461

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                 + L ++   +       ++  L+  P  + G  +  L   +  L +   R   +
Sbjct: 462 LHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVRRERAGGD 521

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
             D    +++     A   +   +        +   +  +            L T   + 
Sbjct: 522 DPDRRLAEAVEGVDPAEVIS---LADALDTFLDGSADDELPFSAEARVRYAQLATELRDL 578

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
             +  +  +    ++  T    V L    +       E       + +            
Sbjct: 579 RRSLADPLMDVLHRVLATTGLEVELSSSPQALAARRRETLSNFLDVAASFAAQEKDASLL 638

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
           A           +           +T+ +L   +S+ L +D + + GL    +P    + 
Sbjct: 639 AFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVAKQFPSEQGRE 698

Query: 662 PFLSRVMQSDLNL 674
            + ++      +L
Sbjct: 699 KWTAQPRVLPHSL 711



 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 92/823 (11%), Positives = 188/823 (22%), Gaps = 65/823 (7%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            L+              A      + AL+   A+ L         +  +       A L  
Sbjct: 375  LRAMHTGVEALRPAPGAERDGIVRCALLDTHADELTWLADRIAHLVATGTPPGEIAVLCR 434

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD-----F 302
            T  +       L   D  +     + +                    + A L+       
Sbjct: 435  TAGDFGAIQSALVDRDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPR 494

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE-----NKIPNIQKCFS 357
              I   D+  LG  +  +  R               +   D  E     + +       +
Sbjct: 495  WRIGPRDLALLGRRARLLVRRERAGGDDPDRRLAEAVEGVDPAEVISLADALDTFLDGSA 554

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            D  L  +   R     +A  LR            +         +++EL+     +    
Sbjct: 555  DDELPFSAEARVRYAQLATELRDLRRSLADPLMDVLHRVLATTGLEVELSSSPQALAARR 614

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN----ALEL 473
               LS       + +   A  K    +A    ++         +  L   +N        
Sbjct: 615  RETLSN---FLDVAASFAAQEKDASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAH 671

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
             +     +   +  L +        ++  T  P         D            + +  
Sbjct: 672  KSKGLEWDVVAVPGLVAKQFPSEQGREKWTAQPRVLPHSLRGDAATLPDAGALDSKGLKA 731

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
                  +   T                L                  +             
Sbjct: 732  FTEQMRDHQHTEELRLGYVTFTRPRKLLLGSGHWWGPTQKRTRGPSDFLLALHDHCLAGH 791

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL---NFDTLILGGLN 650
              + + A   +       L +             + +     +      + D L  G L 
Sbjct: 792  GETEVWAERPDAAAQNPALAEPTADLAWPLPLDEVALDRRRAAAATVRAHLDALASGALA 851

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
                 +  A +  +             E    Q   +    +G      T        P 
Sbjct: 852  TSAIEEQAAPDAAVPAHPAPGEPDGPPEDLEPQPEDEESHEDGDWESWTTARPATTPPPV 911

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
              +  +                   +  L  +   D         R +        P + 
Sbjct: 912  AVTEAVTPATPAATYSAATEGPTPEEARLIHSWDQDLEALSGELLRARQGTRDVVLPASL 971

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK--KRINKNT 828
            + SE+ +L  DP    A     +   P          RGT FH  +    +  +    + 
Sbjct: 972  TASELMRLAADPAGFAAELARPMPRPPQP-----AARRGTRFHAWVESRFEDVQLPMLDP 1026

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
             E+      I D H                    +  +F + E   +     + V +P +
Sbjct: 1027 EELPGHDADIADEH----------------DLEALKEAFEQTEYAHR---TPLGVEVPFQ 1067

Query: 889  MAIESIGIHLTGFADRIDLLKSGF----------VDITDYKTGDNPKKETAQKLIDPQLS 938
            + +      + G  D +  L+S             +I D+KT      +        QL+
Sbjct: 1068 LTLAGR--TVRGRMDAVYRLESDTATGTGPQTPVYEIVDWKTSHTRDADP------LQLA 1119

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
            +   A        ++    A   YIR  +  +   +   ++  
Sbjct: 1120 IYRLAWAEHHRLPLEAV-TAAFVYIRTGETVRPRHLPGRREIE 1161


>gi|253996791|ref|YP_003048855.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
 gi|253983470|gb|ACT48328.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
          Length = 1118

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 115/931 (12%), Positives = 240/931 (25%), Gaps = 126/931 (13%)

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPV--SNIQRLLELARLILIWRNKLPDIIKDL 130
             ++P  +     +       LL+ +          +     LA L+L    +        
Sbjct: 245  LLMPTARFAASNLPCDHPIALLVDWETPLAQKQEVLPMWCALAELLLTASGEPRKEGGLN 304

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL---AADF 187
                  +     A    L + +  + D         + L  L NE     W +    +  
Sbjct: 305  VKVGFPATDEGRAQKTALVEIIHAVEDPAALYRV--KSLPNLSNENAS--WQIITTLSKL 360

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK---------GPIIIAGSTGS 238
            L +A                V        A ++H  + T+           +++     +
Sbjct: 361  LTLAVAELWLVFQRAGEVDFVEIAQRATHALSDHFGEPTELALKLDYQIQHLLVDEFQDT 420

Query: 239  IPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
             P+   L+  +       +G  +    D       +           + N   + H +  
Sbjct: 421  SPSQVALIEQLTLGWQFDDGRTLFAVGDPMQSIYRFRKANVGLFIEAADNGIGNIHLER- 479

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
              +L          +  +      ++     +++  +          ++ E  +      
Sbjct: 480  -LQLYRNNRSCPAIISWINQTFAPIFPTHDEVTQGAIHYRPFIATKQELAEAGVVVHPLI 538

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI--NI 413
                   EA  +RE    I            +K A++   +     +  +L R       
Sbjct: 539  KQADESYEAAAQREAEAVIRTIQEERNRYPGQKIAVLVRSKKHLSHLVSQLRREHQDIPF 598

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
                   L        L SL++A+    D +    +++ P       + Y    ++    
Sbjct: 599  QAVEIEALEGRQIVQDLLSLMHALHHRADRVHWLAILRAPWCGLTLHDLYELAGRDHYRT 658

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
            V                                        +D E+   L D     +  
Sbjct: 659  V------------------------------------WSLMQDSEIIQRLSDDGQARLLH 682

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            L    T      G + +S W +     L             LW + +   + + F+ +  
Sbjct: 683  LRAVLTEAYVNQGRMGVSRWIRGVWLMLNG--------TDCLWDKADVVDVQAFFTCLDG 734

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                 + +       IT+L           +   L ++   +S+ L FDT++L GL    
Sbjct: 735  LDRSNQFSPERMESEITKLFAA-----PDSQGEHLQMMTIHKSKGLEFDTVMLLGLGAPT 789

Query: 654  WPKNTAKNPFLSRVMQSDLN------------------------LKTAEKYIGQ---AAH 686
               NT K   L   +++  +                        L++ EK       A  
Sbjct: 790  GGNNTDKPLVLWEEVKTSYSHELLAAPYIPKGARDKDNVSPYDYLESREKARDANESARV 849

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
             +  A      ++   +   N     S      L L   +     +   Q   +   + D
Sbjct: 850  LYVAATRVERKLHLFGIANQNAKGEISPTKNTYLDLLWNEVAPVFEADAQLAFEQPAQGD 909

Query: 747  YTTKQPHYKR-PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                 P   R  +P  P+  Q    + S            YA+  +K  +    +     
Sbjct: 910  IADFTPQLIRLAQPAVPVLLQTGKAAPS------------YAKPNVKPSYHSSLE----- 952

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
             D GTL H  +  + ++ +   T      ++  +     ++               +I  
Sbjct: 953  ADAGTLAHRYMEMIAQQGVANWTATRVATLEAAMQHWLRQQGHTAAAANDAAVTVVRILQ 1012

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NP 924
              L   +       +        +         +   DR  + + G   I DYK+    P
Sbjct: 1013 QTLNSADGQWVLQARHDAESELAITRTEQDKVKSYVVDRTFV-EDGVRWIIDYKSVRLAP 1071

Query: 925  KKETAQ-----KLIDPQLSLEAAALKAGSFS 950
                 +          QL   A         
Sbjct: 1072 DAAEYELNAATAPYRSQLENYAMLFAHEGLP 1102


>gi|302343284|ref|YP_003807813.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
 gi|301639897|gb|ADK85219.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
          Length = 1159

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 97/869 (11%), Positives = 209/869 (24%), Gaps = 122/869 (14%)

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKG--PIIIAGSTGSIPATARLMSTVANH-- 252
             RL  L+    +   + L+R   E L         +++       P    L+  +     
Sbjct: 318  ARLAALSFDDLLLGALRLLRQRPELLPALRGRFRALMVDEFQDVNPVQGALVGLLCGLGS 377

Query: 253  ----PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
                P+  ++L   D       +        N T ++          LA L         
Sbjct: 378  DDPGPDAPLLLIVGDRKQSIYAFRGADVSLYNQTMADF--EGGGPGVLAALRRNFRSDPR 435

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN-- 366
             V+    + ++++ +      +          +         +     +   L    +  
Sbjct: 436  LVEFFNRLFDQVFAQGKNRQHAPHAYVDFRDDDRQRPGRAAGDFSGGPALELLHCGGDDQ 495

Query: 367  -----EREEAISIAIALRMSLD---ENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
                    EA ++A  L   +        + A++       R  +  L R  ++     G
Sbjct: 496  NAEQRRAREATALAAHLAGLVAGGQVRPGQIAILLRKLTAVRVYEEALRRQDLDFCTVKG 555

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
                     + +   + A+   +D +A+  L++ PL                        
Sbjct: 556  KGFFGCQEVADVVMAMRALLWPDDDLAVTALLRSPLV----------------------- 592

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                     L    L  +A            ++       L     + +      L    
Sbjct: 593  --------GLSDESLLAMAHHGPQLKPSQALAQGRALPDWLPTEQHERLSMARRLLADLG 644

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                       I+   +          L    +            L  L     E    +
Sbjct: 645  PRARRMTPAELITAVIEAGDYMQVLAGLPSGEQKAA--------NLRKLIETAREYDDGV 696

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
            +A     + ++ +           +    + I+   +++ L F  ++L  L         
Sbjct: 697  EACLRRLMAMLAQDPGDAQAPLAGDDGQIVRIMTIHQAKGLQFPVVVLADLAGQAGGGPR 756

Query: 659  ------------------AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
                              A    L   +   L+ +       ++A  F +A         
Sbjct: 757  ALVGPDQNGVISPRPIDFASGQRLETAIHQRLSQRATAIEEAESARLFYVACTRAQERLV 816

Query: 701  RSLRENNIPTIASRW---------------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
              +     P    +W               L  +                  YL      
Sbjct: 817  LCMSAGKRPGPWQKWADAFIAGDELASHVDLGVVGDAVADAPALGPAAAWPDYLPAEAGP 876

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF------ 799
                 +   +R    P L       S S ++     P   +  + L LD           
Sbjct: 877  LAEEGRMLAQRCLIRPALGPAAVRASVSAVEDFWACPRRFFLTQRLGLDTALLPGMGGTG 936

Query: 800  -KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
                      G+L H ++ ++       +       ++ + +S          +      
Sbjct: 937  GDDPAQAARLGSLAHMLLQQV-------DLAAGAAGLELLTESLLAAGKADGGLLTQASL 989

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPA----KMAIESIGIHLTGFADRIDLLKSGFVD 914
            +      + L            +F   P            G+ L G  D +  ++ G   
Sbjct: 990  MAGHFFQTDLAAALAQLPPCT-VFREQPFLLCLPGQGGGPGLELRGEFDLLAPMEDGRWL 1048

Query: 915  ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
            I DYK G              Q+ + AAAL +G   Q             L  +      
Sbjct: 1049 IVDYKVGRRLDPAK----YHGQMLIYAAALWSGGKDQ--AMAPPRAVLAHLGPERAALHY 1102

Query: 975  TNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
                         +++L++L +    + +
Sbjct: 1103 LEFTAAQ-----LDQALEDLRQAAGPMAD 1126


>gi|27375863|ref|NP_767392.1| helicase 2 [Bradyrhizobium japonicum USDA 110]
 gi|27349001|dbj|BAC46017.1| bll0752 [Bradyrhizobium japonicum USDA 110]
          Length = 1180

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 79/792 (9%), Positives = 176/792 (22%), Gaps = 77/792 (9%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                 L   S  W    ++                                   G+    
Sbjct: 390  KTLAMLNRVSSGWVHYKLDRGVDH--VLIDEAQDTSPRQWDIVAHIISEFTAGEGAREGL 447

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             R +  V +         G       A    +  K T         +    +     +  
Sbjct: 448  NRTIFAVGDEKQSIFSFQGAQPREFDARRRELHRKFTAAGLKFDPVAFTYSFRSGAAILH 507

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                      +    + +     + +       +          +   +I+   +    +
Sbjct: 508  SVDHVFRDPAIYKSIHSVEIGHPLHNALADAGPSVIELWDLAEADDRQDIEGWRAPFDGV 567

Query: 363  EADNERE-EAISIAIALRMSLD--------------ENKKKSALITADRNLARRVKLELT 407
               +     A  I   ++  ++                     L+    N    V   L 
Sbjct: 568  AVTSPEVKLARRIQAEIKRLVESGTLTGHEGERRPLRYGDMLILVRRRGNAFDAVIQALK 627

Query: 408  RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
              G+ +  +  + L+  +    L +L +A+    D +A+A  +K PL      + +    
Sbjct: 628  HAGVPVAGADRLKLTEHIGIIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFALAW 687

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIAT---QKNNTHVPHWQSRLSEEDKELAVLLV 524
                     R         +  + VL R+     +        + + L   D   A +L 
Sbjct: 688  GRK--GSLRRALGEQAAGSEKFAAVLRRLEACETRAREETPFAFYAWLLGGDGGRARILR 745

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
                +    L  +     +       S                   +    W       +
Sbjct: 746  RLGHEANDALDEFLELALNYERKAPAS------------------LQGFMAWLRSADTEV 787

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
                    +    +  +  + ++     +   T       + +  +      R    + +
Sbjct: 788  KRDMEISRDEVRVMTVHGAKGLEASVVFMVDTT----SSPADSQRVRLIQVPRGNGGEVV 843

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
            +  G               +             E         +         +      
Sbjct: 844  VWAGRKADDPKPVAEARKAM-----------LEETEDEYRRLLYVAMTRAADRLIVGGCM 892

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
              N+ T+       L+  G T      +   +  L    +            P  F    
Sbjct: 893  PGNMRTVRKLSWYDLVDTGLTGSGLEKQT-LETPLGKVTRFARPEDVVALGTPATFVDQT 951

Query: 765  AQPRTYSFSEIKQLIND-----PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                 +  +   + + D     P    A     +      +       RGTL H ++  L
Sbjct: 952  IALPDWLRTPAPREMQDDDSVRPSGQSAEGGRAVRSGESVQSRALALQRGTLVHRLLQSL 1011

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                  +        M +      E +          R        + +           
Sbjct: 1012 PDIAAERRREAARGFMARNASDWAEAD----------RTALADKVLALIAEPRFAPVFAA 1061

Query: 880  KIFVNIPAKMAIESIGIH---LTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLID 934
                 +     +E  G+    ++G  DR+ +     V I D+KT          A  +  
Sbjct: 1062 GSRAEVAIVGRLERPGLQPALVSGQIDRLVVRPD-EVLIVDFKTNQAAPKSATEAPAVYV 1120

Query: 935  PQLSLEAAALKA 946
             QL+L  A L  
Sbjct: 1121 RQLALYRAVLAR 1132


>gi|309810384|ref|ZP_07704218.1| UvrD/REP helicase [Dermacoccus sp. Ellin185]
 gi|308435624|gb|EFP59422.1| UvrD/REP helicase [Dermacoccus sp. Ellin185]
          Length = 1176

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 107/1118 (9%), Positives = 266/1118 (23%), Gaps = 212/1118 (18%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEIT---------------GKKSTI--LPIIKSLGDVVEE 87
              +     T++A  EL     +                     ++   P I +       
Sbjct: 86   QEILGLTFTRKAAGELAERVNQRLRMLEASGLWSPPDDPDGTPSLGESPTIST-----YN 140

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
             +   ++  + L   +    R+L  A     + +++         +  + LP   A  + 
Sbjct: 141  AYAGRIVGEHGLRLGIEPDARMLSEAAAWQ-FAHEVASGWDGDMSQVTVKLPSVTAAVLA 199

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA--------------DFLKIASK 193
             A  L++    ++     ++ L    +         +                 +    +
Sbjct: 200  TAGELSEHRRSVDELRAYYDSLLGSLDAIPFAPRKRSLGDAGKALTAKAKGHQQILPLIE 259

Query: 194  YWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
             +     + +A                      + +     +++     +  A    ++ 
Sbjct: 260  RYQSLKKDRSALDFSDQIAFAAELADRFPAIGAIERARYRMVLLDEFQDTSSAQIAFLAA 319

Query: 249  VANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            V           V+   D H     W   +  + +    +          +A L      
Sbjct: 320  VFAAGETQQRPGVVAVGDPHQSIFGWRGASVTTLSAFRRSFALPGSDLTPVASLATSWRN 379

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                +      +  +   S V   +                   P        +A     
Sbjct: 380  DAAVLDAANVTAAPLNRASRVPVATLR-----------------PRPDAGPGALAAARYL 422

Query: 366  NEREEAISIAIALRMSLD-----ENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
             E +EA ++A  +          E  + +A++   R+    +   L   G+  +      
Sbjct: 423  TEADEARAVAQWVAERRRPLRSGEAPRTAAVLCRKRSQFVPMLDALHDAGVPAEAVGLGG 482

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS------RAKNALELV 474
            L  T     L S+L  +   +    +  L+  P  + G  +            +   +  
Sbjct: 483  LLQTPEIVDLVSMLWVVDDPSRGDHLMRLLTSPAMRLGAADIAALGSWAKELHQRHQDDA 542

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
            A    + +       +           +  VP      +         L       ++ +
Sbjct: 543  AAATEERAEGGSAEPASSESDAGEGAPSEPVPGPDGEAARRGARAERDLAQDTRDEVSLV 602

Query: 535  VTYKTNKNSTCGNLS---------------------------------ISDWTKLTVTCL 561
                   +++                                      + +  ++    +
Sbjct: 603  EAIGELPDASWRGRDGEYLCDVARERLRGFHTSVQRLRLLSGLPLADFVGEAERVLGLDI 662

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            + +    +         +    ++  FS   +  +      +EW+D   +   G  +   
Sbjct: 663  EVLARPGYDPSSARAHLDAFADIAGTFSVQAQRPTLGGF--LEWLDAARQEERGLEMPAI 720

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP-------------------------- 655
                  + +L    ++ L +D +++ GL EGV+P                          
Sbjct: 721  EVNPHAVQVLTVHAAKGLEWDVVVVPGLVEGVFPSLGGSTRAEGEQWQYKPHKARGWLSG 780

Query: 656  -KNTAKNPFLSRVMQSDLNLKTAEKYIGQA-------------------AHDFEMANGTR 695
             ++   +    R     L +  AE     A                      +      R
Sbjct: 781  LQSIPYDLRGDREGLPALAVTGAEDSDELADRFTEFCEQGLKHAVTEERRLAYVAFTRAR 840

Query: 696  HLIYTRSL---RENNIPTIASRWLQRLLVL------GGTDFFDNLKKRGQCYLDWTRKLD 746
              +   +         P   SR+L  LL             ++ +          +  LD
Sbjct: 841  STMLLTAPIWYASGTTPRETSRFLTELLEEPDLGASIERLHWEQMPPTQVDGERPSNPLD 900

Query: 747  YTTKQPH------YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                           +     P   Q R            +P    A  +         +
Sbjct: 901  ADVLTATWPLDAMADQRAHLVPAADQVRALRTRLQNGEALEPAGQLALGLEGTIEDREQE 960

Query: 801  KDPDRTDRGTLFHNIITELIKK---------RINKNTPEINHLMKQIIDSHFEKENLPPH 851
             +    +R      + ++++            +  +       +++ + S          
Sbjct: 961  MELLLAERQRERTRLRSDVVLPSHLSASQLVALASDKDLFARRLRRPMPSEPAVAARRGT 1020

Query: 852  IDIIWRHLFHKISH--------------------------SFLEHEEKIQSSIEKIFVNI 885
                W    +  +                           +FL  E   +     + V +
Sbjct: 1021 AFHAWVERHYGAAALVDLDELPGFGDEDVAADEMLPVLQTNFLASEWADR---VPVDVEV 1077

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
              +  +   G  + G  D +     G   + D+KTG  P   T  +    QL+  A    
Sbjct: 1078 ALETVVA--GYAVRGRIDAVFARDGGGFTVVDWKTGAKPAGPTL-RHRSLQLAAYALGYA 1134

Query: 946  AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
                  +D   V   F+     +     + + +     
Sbjct: 1135 R--LRGLDPEDVDAAFFYAATGETYRPDVASQRDLEEL 1170


>gi|262170719|ref|ZP_06038397.1| exodeoxyribonuclease V gamma chain [Vibrio mimicus MB-451]
 gi|261891795|gb|EEY37781.1| exodeoxyribonuclease V gamma chain [Vibrio mimicus MB-451]
          Length = 1148

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 116/987 (11%), Positives = 249/987 (25%), Gaps = 137/987 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+    +KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELL----SKLLDREEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W        I  +       
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQ------PILWRELYAYTG 177

Query: 201 ELN--ASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           E               +   A            + I G +   P     +  +  H +  
Sbjct: 178 EQGHSIYHRANLYQRFIEQLASGNFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA 297
           ++L     H    I +                                    ++ Q SL 
Sbjct: 238 LMLTNPCQHYWGDIRDRKYLARVAAQKRKLLQINGEQVTIGSEVSPLKGDVESYLQESLH 297

Query: 298 -------KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMR 340
                   LL  +     D   L   +++                 I    L        
Sbjct: 298 LSHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDD 357

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                    P+I +    + +    +   E   +   L    + +     +   ++  D 
Sbjct: 358 AKFASSGHKPSITEQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDI 417

Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           N        +         I   IS       +   +    LL           +  L++
Sbjct: 418 NAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLE 477

Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLD 494
            P  +A+F   E+  + AK  +E   +R   NS    +                + L+  
Sbjct: 478 TPAIMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGY 537

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            +  +     +         + + ++  L   +   +  L   ++    T        W 
Sbjct: 538 AMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVETLSELRSQLAQTQSMEQWRYWL 597

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
              +                L  +    +L +L  ++ + G     +      ++T  + 
Sbjct: 598 NELLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLS 652

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
           G  +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  
Sbjct: 653 GTRISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGD 711

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGT 725
           ++  +          + +    L  +   R   +N   + S  +  LL        L G 
Sbjct: 712 RSRREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGD 770

Query: 726 DFFDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKRPK------------PF 760
           +  ++     +     T +               +  +     R +             +
Sbjct: 771 EHLESDDSGRRLVKHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDY 830

Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIIT 817
               + P      E+++    P   + +R LK+     +   + D      G   + +  
Sbjct: 831 LLEVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRD 890

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
           EL++  +          +          +   P        L      +    E+     
Sbjct: 891 ELVENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELVQSAQQALALAEKIGFLC 950

Query: 878 IEKIFVNIPAKMAI----ESIGIHLTG 900
            + +       + +    +   + L G
Sbjct: 951 HQPLEDE-EIDLRLQPFADGREVLLRG 976


>gi|327484828|gb|AEA79235.1| Exodeoxyribonuclease V gamma chain RecC [Vibrio cholerae LMA3894-4]
          Length = 1148

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 116/985 (11%), Positives = 249/985 (25%), Gaps = 133/985 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDREEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W       +    Y      
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEDVAEIADQHPWQPIL--WRELYAY--THKQ 179

Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             +           +   A  +         + I G +   P     +  +  H +  ++
Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSVWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297
           L     H    I +                                     + Q SL   
Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVENYLQESLHLN 299

Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342
                 LL  +     D   L   +++                 I    L          
Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                  P+I      + +    +   E   +   L    + +     +   ++  D N 
Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         I   IS       +   +    LL           +  L++ P
Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479

Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496
             +A+F   E+  + AK  +E   +R   NS    +                + L+   +
Sbjct: 480 AIMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +     +         + + ++  L   +   +  L   ++    T        W   
Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L  +    +L +L  ++++ G     +      ++T  + G 
Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLVDAGYQQAISPAIIRQVLTNKLSGT 654

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  ++
Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGTDF 727
             +          + +    L  +   R   +N   + S  +  LL        L G + 
Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEH 772

Query: 728 FDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKRPK------------PFPP 762
            ++     +     T +               +  +     R +             +  
Sbjct: 773 LESDDSGRRLVKHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819
             + P      E+++    P A + +R LK+     +   + D      G   + +  EL
Sbjct: 833 EVSWPMELDLVELQRFWRLPVAYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           ++  +          +          +   P        L      +    E+      +
Sbjct: 893 VENLLACCDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952

Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900
            +       + +    +   + L G
Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|254225833|ref|ZP_04919437.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae V51]
 gi|125621647|gb|EAZ49977.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae V51]
          Length = 1148

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 115/985 (11%), Positives = 244/985 (24%), Gaps = 133/985 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDREEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W       +    Y    + 
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THMQ 179

Query: 201 ELNASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             +           +   A            + I G +   P     +  +  H +  ++
Sbjct: 180 GHSIYHRANLYQRFIEQLASGNFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297
           L     H    I +                                    ++ Q SL   
Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVESYLQESLHLS 299

Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342
                 LL  +     D   L   +++                 I    L          
Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                  P+I      + +    +   E   +   L    + +     +   ++  D N 
Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         I   IS       +   +    LL           +  L++ P
Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479

Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496
             +A+F   E+  + AK  +E   +R   NS    +                + L+   +
Sbjct: 480 AMMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +     +         + + ++  L   +   +  L   ++    T        W   
Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L  +    +L +L  ++ + G     +      ++T  + G 
Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  ++
Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731
             +          + +    L  +   R   +N   + S  +  LL     +     D  
Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEH 772

Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762
            +           L                     +     R +             +  
Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819
             + P      E+++    P A + +R LK+     +   + D      G   + +  EL
Sbjct: 833 EVSWPMELDLVELQRFWRLPVAYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           ++  +          +          +   P        L      +    E+      +
Sbjct: 893 VENLLACCNGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952

Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900
            +       + +    +   + L G
Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|32034248|ref|ZP_00134459.1| COG1330: Exonuclease V gamma subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209344|ref|YP_001054569.1| exodeoxyribonuclease V gamma chain [Actinobacillus pleuropneumoniae
           L20]
 gi|126098136|gb|ABN74964.1| Exodeoxyribonuclease V gamma chain [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 1114

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 86/786 (10%), Positives = 198/786 (25%), Gaps = 93/786 (11%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
           + ALL      +   +P  P      T+ V +    Q L+ +  + TG  +         
Sbjct: 13  LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 59

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134
                   T+ L   Y +  P    + + E       L RLI  +  K     + L    
Sbjct: 60  --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 115

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180
                  P     LA  +AD+ D        W              E L A+   +    
Sbjct: 116 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 174

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228
                  L+  S  W   + ++ A S                    +    E        
Sbjct: 175 -RDILANLRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 233

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281
            I + G +        ++  ++ H    +                       +  + +  
Sbjct: 234 RIFVLGISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQ 293

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                      Q     L  +    RE + +L     +         +            
Sbjct: 294 DLDALLAEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 349

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397
            +    +   + +    + +    +   E   +   L    + N     K   +++AD +
Sbjct: 350 LNFNNEQRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 409

Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
                   +        +  I   +S     +     +    LLN         ++  L+
Sbjct: 410 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 469

Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                         +    R       +    +    D  +  +            +   
Sbjct: 470 DVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 529

Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                        +  L   ++  +   +            + ++ +W       +    
Sbjct: 530 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 585

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623
                   +    +    L+S   ++       + +    I+II  L++ +  + +    
Sbjct: 586 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 643

Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
             +  +     L  R + F  + L G+NE  +P+  + N F   +MQ         +   
Sbjct: 644 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 701

Query: 683 QAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                 E     + +   +       +N   + S  + +LL        +  + +     
Sbjct: 702 DRYLFLEALLSAQEIFYLSYIGQSATDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 761

Query: 740 DWTRKL 745
           +++  L
Sbjct: 762 NFSEAL 767


>gi|269926936|ref|YP_003323559.1| UvrD/REP helicase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790596|gb|ACZ42737.1| UvrD/REP helicase [Thermobaculum terrenum ATCC BAA-798]
          Length = 779

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/711 (10%), Positives = 181/711 (25%), Gaps = 112/711 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS----TILPIIKSLGDVVEEKFTADLLLSYNLNP 101
           ++     T +A +E+R     + G            + +   +       D         
Sbjct: 60  NILAVTFTNKAAREMRERIERLVGGAFGSYEARNITMGTFHSICSRVLRRDGGAIGISPN 119

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            V          RLI    N++    K   P S  +   S  +A+               
Sbjct: 120 FVIYDDDDQI--RLIKQALNEIGLDEKQYAPRSIQARISSAKSAL--------------- 162

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA---- 217
                ED  +     Y               + + + L    A       + ++      
Sbjct: 163 --LDPEDYSSQGVSSYFDEIAA------RVYRRYQQLLEINQAVDFDDLLMKVVLLWKSY 214

Query: 218 -EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
            +     +     +++     +  A   L++ +        +    D       W     
Sbjct: 215 PDILQQYRDRWQYVLVDEYQDTNRAQYMLINLLTQEHRN--IFVVGDEDQGIYSWRAADI 272

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +   +          +  L+      + + +V++ +   + +     L  + 
Sbjct: 273 RNILNFERDYPEAK---------VILLEQNYRSYQEILDVASHIISSNRLRRPKKLWTNK 323

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI---ALRMSLDENKKKSALIT 393
           S                     V + EA +E++EA  IA     L    +      A++ 
Sbjct: 324 SGGAL-----------------VRVREAYDEQDEASYIAREISRLTSLGEYTYSDFAVMY 366

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK-- 451
              + +R V+   +R+ I   I  G           + + L  I   +D  ++  +++  
Sbjct: 367 RTNSQSRPVEEAFSRYRIPYQIIGGTRFYERREVKDVLAYLRLIHNPHDAASLRRIIENT 426

Query: 452 -HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
                      K L    +   +      + +  I  L+ +       +           
Sbjct: 427 PSGRGIGKGTMKTLEDLASRAHISLWDAIEIALGIKSLEEVGAFLPNLE----------- 475

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                       L     + +  LV            L++       +            
Sbjct: 476 ---------IPKLQSKAKESLKQLVGLIYELREQRDILTLPHLIDTLLIKSGYASFLSSG 526

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
              +L   E  + L S+        +         ++ +  +     V       + + +
Sbjct: 527 AEEDLERLENARDLISIAQDYAAIDTSEA-----LVEFLQEVALQSDVDTMQNNGNQVTL 581

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L +  + + G  EG+ P   + +                     +    +  
Sbjct: 582 ITLHAAKGLEYKVVFIIGFEEGLLPHARSMDR--------------ESDIEEECRLAYVG 627

Query: 691 ANGTRH-LIYTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                  L  + +   N        + SR+L  +          +L +RG 
Sbjct: 628 VTRAMEKLYISYAFHRNVFGATQTNVPSRFLANIPPDLLDGSLPSLGRRGP 678


>gi|121726772|ref|ZP_01679990.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae V52]
 gi|121630806|gb|EAX63190.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae V52]
          Length = 1148

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 114/985 (11%), Positives = 244/985 (24%), Gaps = 133/985 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W       +    Y      
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179

Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             +           +   A  +         + I G +   P     +  +  H +  ++
Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297
           L     H    I +                                    ++ Q SL   
Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVESYLQESLHLN 299

Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342
                 LL  +     D   L   +++                 I    L          
Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                  P+I +    + +    +   E   +   L    + +     +   ++  D N 
Sbjct: 360 FASSGHKPSIAEQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         I   IS       +   +    LL           +  L++ P
Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479

Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496
             +A+F   E+  + AK  +E   +R   NS    +                + L+   +
Sbjct: 480 AMMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +     +         + + ++  L   +   +  L   ++    T        W   
Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L  +    +L +L  ++ + G     +      ++T  + G 
Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  ++
Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731
             +          + +    L  +   R   +N   + S  +  LL     +     D  
Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772

Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762
            +           L                     +     R +             +  
Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819
             + P      E+++    P   + +R LK+     +   + D      G   + +  EL
Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           ++  +          +          +   P        L      +    E+      +
Sbjct: 893 VENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952

Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900
            +       + +    +   + L G
Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|317508740|ref|ZP_07966393.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC BAA-974]
 gi|316252988|gb|EFV12405.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC BAA-974]
          Length = 804

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 86/757 (11%), Positives = 193/757 (25%), Gaps = 86/757 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  EL+     + G +      + +          A+       +   +
Sbjct: 65  GEILAITFTNKAAGELKERVGALVGGR-MWEMWVSTFHSSCARFLRAEASAEAGFDRNFT 123

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+ +   +L        P                   LA  I  ++ E  
Sbjct: 124 IYDSDDS-KRLLSMVAEELELDSNRFPPRM-----------------LAAKIGDLKNELI 165

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE------ 218
             E   A   + +          L    + + ERL   NA       +  ++        
Sbjct: 166 TPEAALAGVEDPFD-------LLLGQVYRRYQERLAAANAMDFDDLIMRAVQLLQTNDEV 218

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV-------LPGLDCHIPTAIW 271
           AE   +     +++     +  A   L+  +     G  V           D       +
Sbjct: 219 AERW-RARFRHVLVDEYQDTNHAQYVLIRELVGAGAGTQVGAETSALTVVGDSDQSIYRF 277

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
              T ++      +      P      L       +  +     V     GR        
Sbjct: 278 RGATIRNIEEFERDF-----PNARTVLLEQNYRSTQNILSAANAVIAHNEGRR------- 325

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KS 389
                         E ++         +    AD+E +EA  IA  +   +    K    
Sbjct: 326 --------------EKRLWTEAGDGRQIVGYVADHEHDEAGFIATEIAELVRAGAKHGDI 371

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A+     N +R  +    R  +   +  G           + + L  I   +D +++  +
Sbjct: 372 AVFYRTNNASRVFEEAFIRHAVPYRVVGGQRFYDRREVRDVIAYLRVIANPSDAVSLTRI 431

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
           +  P    G   +    +    +         +     + +L      +      +    
Sbjct: 432 INTPRRGVGDKAQAQIASWAGSQGKTFWEGCQAAAEGAIPALAARSQRSVAEFVAMLAGL 491

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYK--TNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                  +     LV   ++      T    T+        ++ +   + V   +     
Sbjct: 492 RDELSAGELTVGELVAQTVERSGYRATLADSTDPQDGARLENLDELISVAVEYGEMAAGQ 551

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN-AIEWIDIITRLIDGETVKPKIEKSS 626
           E   + +    E    L                    ++++ ++ + D + +     +S 
Sbjct: 552 EGGAVADGLAGELRVALPPEEEGESGADGDAGVAKLRDFLEQVSLVADSDRLPEGGSESG 611

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            + ++    ++ L F  + + GL EG +P   +    +    +  L      +   Q   
Sbjct: 612 VVTLMTLHTAKGLEFPVVFMTGLEEGQFPHLRSLGDPVELAEERRLAYVGITRAREQLYV 671

Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                        TR+ R + +    SR+L  +             +RG+    W     
Sbjct: 672 ---------SRSLTRTFRGSPMTNPPSRFLIEIPPHL------VSWRRGEPDQTWAGFTR 716

Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                    R +   P               L ++ +
Sbjct: 717 SDFGSVSAPRAENAAPFRRPAAERGPRPRPNLRHESF 753


>gi|227502911|ref|ZP_03932960.1| helicase [Corynebacterium accolens ATCC 49725]
 gi|227076333|gb|EEI14296.1| helicase [Corynebacterium accolens ATCC 49725]
          Length = 846

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 95/755 (12%), Positives = 201/755 (26%), Gaps = 88/755 (11%)

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
              +S+   +        +    + +E   P+     + V+++  D+E      +A  +R 
Sbjct: 80   ADQSVFAFRGANSQFLEEFPAENSVELSQPHRSGSPACVSIV--DSEGRLRDVVADTVRR 137

Query: 381  SLDENK---KKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNA 436
               ++    +  A+I        +++  L   G+ + IS   + L+     S +   L A
Sbjct: 138  RHLDDGVQWRDIAVIVRSTADIGQMRRTLLAAGVPVHISPTDVILAEQRLVSAMLLALRA 197

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG----------------NK 480
            + +      +  L+  P+                      RG                 +
Sbjct: 198  LEEDLSNAELEELLTGPVGGSDPVTLRRLIRGLRRWAPDTRGMDSLRELLHGELPDFNGQ 257

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
             +     +   V   +A  +           +  E      L +      +    T    
Sbjct: 258  LTEREFSILERVRAVLAAGRQAMQAQASVEEILWEVWSATELDMRLQASALRGGATGSQA 317

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                   +++ D         +         L ++  +E    +    + I +    I A
Sbjct: 318  DRDLDAMMALFDAAGDYSE--RRPGSSLQSFLTHITEQELPTGVRDRRTAIPQAVEIITA 375

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE-SRLLNFDTLILGGLNEGVWPKNTA 659
            +     +  T ++ G           T  I G  +   LL+ D      ++         
Sbjct: 376  HGAVGREWDTVIVAGAQEGAWPSLGETGSIFGQEDLIDLLDRDIEPDTPVSHIASRLAEE 435

Query: 660  KNPFLSRVMQSDLNLKTA------EKYIGQAAHDFEMANGT--------RHLIYTRSLRE 705
            +  F     +    L  A      E    + +       G              +R+LR 
Sbjct: 436  RRLFHVATTRHRSRLLIAAVENSNEDAFAEPSRFIAEFTGRGVDVPGTMARREASRALRA 495

Query: 706  NNIPTI-----------------------------ASRWLQRLLVLGGTDFFDNLKKRGQ 736
               P                                S   Q   V+   +  +  +++  
Sbjct: 496  TQFPRELGLDVPEPAPVSLRDGLEVDPLDISVLSVPSFVAQLRRVVANPESGEAERRQAA 555

Query: 737  CYLDWTRKLDYTTKQPH---YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
              L    + +     P      R           ++ S S ++ L+N P           
Sbjct: 556  RQLARLAQAEIPGAHPDQWFSARSVASHTQLRGSKSLSPSRVEALLNCPLKAIVG----- 610

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
              +       +   RGT+ H  +  + +        E   L+                  
Sbjct: 611  -NLAEDPSGAEHLLRGTMAHAFLEAIGRGM----DAEKARLLVMEAYELILDVPQWQLQS 665

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913
             +    F ++     +  ++ +   E   V +   + +    I + GF DR+     G  
Sbjct: 666  KLE--EFSRLLERTQQWAQQSEVKNELAGVEVLVYVEVAP-DIRVGGFMDRLMKDGDGNY 722

Query: 914  DITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN---LFYIRLKQKFK 970
             + D KTG +     A+   + QL     AL  GSF     R          + +     
Sbjct: 723  LVVDLKTGKS-AATQAEAEENRQLMTYQLALSRGSFDGQRVRDGEGMPRAGGVLVYPGKD 781

Query: 971  IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
               IT   +     E  E+    L  +   L+  +
Sbjct: 782  SSKITTRTQSQLTAEALEEFSALLPSLAAELRGPQ 816


>gi|238751475|ref|ZP_04612967.1| Exodeoxyribonuclease V gamma chain [Yersinia rohdei ATCC 43380]
 gi|238710342|gb|EEQ02568.1| Exodeoxyribonuclease V gamma chain [Yersinia rohdei ATCC 43380]
          Length = 1123

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 89/766 (11%), Positives = 193/766 (25%), Gaps = 87/766 (11%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL+    ++N               + V +    Q L+ +  +     + I 
Sbjct: 11  DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANIE 61

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
                L      +    +L         S      +L  L+      L D       +  
Sbjct: 62  ---FPLPATFIWEMFTRVLPGIPKESAFSKDAMTWKLMWLLPQ----LLDNPAFSPMKRY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKY 194
           LS          LA  +AD+ D       +W E     +              L +    
Sbjct: 115 LSDDSDKRKIHQLAARVADLFDQYLVYRPEWLEKWERGQLVDNLDDAQQWQALLWVELTR 174

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANH 252
           +T +L +             +R   E  +        + I G +   P   + +  +  H
Sbjct: 175 YTRQLEQPEW-HRANLYQRFIRTLLESDVCPAGLPKRVFICGISALPPIYLQALQALGKH 233

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------THPQ 293
            +  ++      +    I +                                       Q
Sbjct: 234 IDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYREATEVKLFRQPEQAEQLFNADGEQ 293

Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSD 338
                LL        D   L +  +++      +                +         
Sbjct: 294 DLSNPLLASWGRLGRDHMYLLSQVDDIQEVHAFVDIEPDNLLHGIQHDMLELEDHAVIGT 353

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITA 394
              T    ++   +      ++L    + + E   +   L   L    +   +   ++ A
Sbjct: 354 TPETLAHSDQKRELALKDRSLSLHVCHSPQREVEVLQDNLLRLLAADPELTPRDIIVMVA 413

Query: 395 DRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           D +                  +   IS               +LL+          +  L
Sbjct: 414 DIDSYTPYIQATFGNATGERYLPFAISDRKASQAHPALQAFITLLDLPQSRFTSEQVLAL 473

Query: 450 VKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-----------KSLVLDRI 496
           ++ P     F   E  L R +  +    +R   +  ++ +L             +    +
Sbjct: 474 LEVPALANKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELNLPATGQHTWHFGITRMLL 533

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
               ++T          +E   LA  L   +      L+     +       ++S+W+ L
Sbjct: 534 GYAMDSTAGDWQGVLPYDESSGLAAELAGQLA---ELLMQLSQWRQQLAEARALSEWSPL 590

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L +    +      L   E  +    + S  I              D +   +D E
Sbjct: 591 CRQLLDSFFEPDDETDAVLVLIE--QQWQKVISYGIAAQYPDIVPLSLLRDELASRLDNE 648

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+G++P+      F   +M   +    
Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGIYPRTLPPLGF--DLMAKQVRRGD 705

Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719
             +         E      + L  +   R   +N     S  +  L
Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 751


>gi|269955587|ref|YP_003325376.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304268|gb|ACZ29818.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
          Length = 1192

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 97/864 (11%), Positives = 213/864 (24%), Gaps = 127/864 (14%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPAT 242
            L      +  R    +A                      + +     +++     +  A 
Sbjct: 290  LLDLVAEYRRRKRAADALDFGDQIAFAAELARSVPYVGEVERARFRVVLLDEYQDTSYAQ 349

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
              L++ +     G  V    D H     W   +            ++      +  L   
Sbjct: 350  VELLAGLFG--GGHAVTAVGDPHQSIYGWRGASASGLARFPERFRHADGAPAGVRYLSTS 407

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                   +      S            + L  + +       L                +
Sbjct: 408  WRNDAAVLAAANIAS------------APLRAELTTHVPPLDLRPGAGAGVVSAHVATTL 455

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            E + E             +    +  +A++   R+    V++ L R G+ +++     L 
Sbjct: 456  EEEAEAAAEWVAERWRPGTHPHGRVTAAVLCRKRSQFAAVEVALRRRGLPVEVVGLGGLL 515

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS--RAKNALELVALRGNK 480
            +T     + +LL A+   +   ++  L+  P    G  + +    RA +       R   
Sbjct: 516  STPEVVDVVALLEAVHDPSRGDSLLRLLTGPRVNLGAADLHALGSRAADLAREDDPRRAA 575

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT-------- 532
                         D  + + ++  V            +    L                 
Sbjct: 576  GRAHSDGDAPAAPDGGSGEADDLAVVEGDVVDHRSLVDALDDLPQPGRAARDGRVLTPAG 635

Query: 533  --PLVTYKTNKNSTCGN--LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
               L   ++   S  G   LS+ +        L                 + G+ +S   
Sbjct: 636  HTRLAALRSVLRSLRGLTYLSLPELVVQAERALGLDVEVATADAVATLVPDAGERVSRRG 695

Query: 589  SKIIETGSCIKANAIE------------WIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             + ++    + A   +            W+ +  +   G  +  +      + ++    +
Sbjct: 696  REHLDAFRDVAATFAQSADAATLGAFLAWLGVAQKQERGLDLPVREPDPDAVQVITAHAA 755

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNP-------------FLSRVMQSDLNLKTAEKYIG- 682
            + L +D + + GL +GV+P                     L   ++ D     A ++   
Sbjct: 756  KGLEWDVVAVPGLVDGVFPTIAEAANGQRAESAWLTDVAALPYPLRGDDADLPAFRWEAA 815

Query: 683  ------------------------QAAHDFEMANGTRHLIYTRSLREN--NIPTIASRWL 716
                                    +    +      R  +   +      + P   S +L
Sbjct: 816  VDTKELDGLRGEFRAACGEHALAEERRLAYVAFTRARRELLLTAHWWGTSSTPRRLSPFL 875

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
              L+ +G                +    ++ T   P     +   P +    T +  +  
Sbjct: 876  VELVEVGLVTADGWTAAPDAADSNPRDDVEVTASWPAVDDVEVGSPRDVLRATAALVDAA 935

Query: 777  QLINDPYAVYARRIL-------------------------------KLDFIPHFKKDPDR 805
                  +AV A  +L                                +      +   DR
Sbjct: 936  ATDRAAHAVAADGVLVDAAGHDIVELARILLAERDERSGHEVEMPAHVSASGLVRLATDR 995

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---HLFHK 862
             +        +         + T     + +Q   S     +  P  D            
Sbjct: 996  DEFALQLRRPVPAEPTVHARRGTRFHEWVEQQFASSALFDVDDLPGADDGDLPGDADLDV 1055

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF---VDITDYK 919
            +   FL  E   +     I V    +  +   GI      D +     G    V + D+K
Sbjct: 1056 LKEKFLVSEWADR---TPIAVEQDVETPLA--GIMTRSRMDAVFADPDGEPGSVVVVDWK 1110

Query: 920  TGDNPKKETAQKLIDPQLSLEAAA 943
            TG  P    A+   + QL++   A
Sbjct: 1111 TGRPPTDTAARAAREVQLAVYRLA 1134


>gi|315655699|ref|ZP_07908597.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333]
 gi|315489763|gb|EFU79390.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333]
          Length = 1164

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 114/1020 (11%), Positives = 257/1020 (25%), Gaps = 125/1020 (12%)

Query: 45   ASVTIYVPTKRAIQELRSE---FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              + +  P   A + L          +     +L    S G V E     +        P
Sbjct: 71   PRMLVLSPNAGAARRLSERALEIRAQSEDPGCLL--GVSKGFVAEVFARFNQWRKAEGLP 128

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             V    RL   A +++  ++ L ++  +           +        ++L D I  +  
Sbjct: 129  EV----RLATDAEVMVQIQDFLAEMPLE-------EELRAALETQGFRRDLVDGIFRVRA 177

Query: 162  E--EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
               +   +   +  +              +       +    L+ +S     +  ++A A
Sbjct: 178  FAGDVSSDSAASPVHPLVTRLIQAMQADREAKRSQARQSAWPLDTASLFEEYLLAVKAGA 237

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                      + I            ++S  A   +G  ++           +   +   +
Sbjct: 238  -----PVPELVGIDDLQNFNGLMIDILSLWA--THGTTLVACTLPETCVNTFRGASPHLS 290

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                                ++ L  +      L         R  V   S    ++   
Sbjct: 291  ERLWQQLETIPG-----KGAIEILLTQEHVPAPLRQAWRIAVNRLGVHGISARLWNSIQE 345

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITA 394
             +    E            + L+E   +  +   I   L+ +   + +       A++T 
Sbjct: 346  PSPASTETDSLCDADGRDRIILVEKSTDTAQYQEIGTLLQDAHIFSDRPLKYSQMAVLTR 405

Query: 395  DRNLARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFK------LNDFMAIA 447
                AR+V   L    I + +      L+    +  L  ++ A+            + +A
Sbjct: 406  SSREARQVAEVLENMDIPVVVPGATGQLNEGRLTRYLLKMMQAVCVEDCDQVKLSDLDLA 465

Query: 448  TLVKHPLAKFG-------FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             L+   L  +            Y  + +   +     G+    D  D        I    
Sbjct: 466  GLLSSALVGWDVWRMRRMDSSLYDLQLQPPADSENAAGSTGVMDSADTADDEGSGIQIVG 525

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
            N  ++  +  ++     + +V  VD I+  I           +             +V  
Sbjct: 526  NLPYIQQFLRQVISGQNDFSVRSVDEIISAIPDAAQLVDLAQALRSGWQQWKADSGSVQL 585

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-------- 612
            L     D   +   L        L       ++    +  +  +  D             
Sbjct: 586  LLWKLWDGLGRGEILQARALQPGLVPAVRSTLQIDLDLVMDLFKAADWFEARNPGKTAAD 645

Query: 613  ---------IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                     +   TV P       + ++    +   ++  + + GL +G WP        
Sbjct: 646  FAQGMLARDLPTGTVAPHHLVKDAVTVVSAAATVSQHWSLVAVVGLTDGNWPAMRWPGSI 705

Query: 664  LSRVM--QSDLNLKTAEKYIGQ-------AAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
            L   M    +    T     G          H F         +   +  ++ +      
Sbjct: 706  LGSSMFELENYGDPTNSSSAGYLWNWQNEYRHFFTALTRCTQRLILGTTAQDGVGRSTFL 765

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKR----- 756
                  +         L    + ++ + R              +D  T      +     
Sbjct: 766  TSLVQTLQLEPKQHRRLPTNLRDFVAYLRAACLGGETSWGTPTIDAPTAAGLLAKLAAGD 825

Query: 757  -PKPFPPLEAQPRTYS------------FSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
             P   P         S             S +++ + +P            +        
Sbjct: 826  CPSAHPENWIGALPVSGDETESAEIHIYASGLERALENPLDYVLSWS---GYSNDEDDPY 882

Query: 804  DRTDRGTLFHNIITELIKKRINKN--------TPEINHLMKQIIDSHFEKENLPPHIDII 855
                 G + H     L ++   +           ++   ++Q +       +    ++  
Sbjct: 883  AANKVGNIVHEAAEILGRRYWWEGHGPRDDLEFEQVLTELRQEVRRLLGPLSGDTWVESN 942

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIP----AKMAIESIGIHLTGFADRIDLLKSG 911
            +R                 Q         +      + +     +      DR+ +   G
Sbjct: 943  FRRHIETCLVPLATFLVNHQ---YPSRFEVRYPCRLETSSGKGALVYNARIDRV-MFAHG 998

Query: 912  FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
             V I DYKTG+      A+   + QL+L  AA  A    Q     +A +  +++    K 
Sbjct: 999  RVIIMDYKTGNPSNFSAAKVAANLQLALYQAAYNASPDGQKQPCDMAEIVALQVPPDSKK 1058


>gi|311696605|gb|ADP99478.1| exodeoxyribonuclease V, gamma subunit [marine bacterium HP15]
          Length = 1208

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 101/966 (10%), Positives = 227/966 (23%), Gaps = 111/966 (11%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI-----TGKKSTILPIIKS 80
           L   +V   R++P+ P  L S T  V +    Q L+    E            I   +  
Sbjct: 30  LRRAVVYICRHNPMPP--LESETFLVQSNGIAQWLKLALAEKRTEDGLEGGLGIAAGMDF 87

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
           L            +L     P  S   +   + RL  +    +            L    
Sbjct: 88  LFPARFIWQAYRAVLPDGEVPEQSPFDKRRLVWRLYRLLPRLVGQDEAFTPLARFLEGND 147

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY--GMWWLLAADFLKIASKYWTER 198
                  LA+ +AD+ D  +     W        +            D           R
Sbjct: 148 PDLRNFQLAEKVADLFDQYQVFRADWLAAWEQGKDVIITARAEEKPLDAETRWQPLLWRR 207

Query: 199 LVELNASSPVGYQIAL--------MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
           LVE   +     +  +         R +A          I++ G +         +  ++
Sbjct: 208 LVEDVGADAHTSRSQIHTRFMEQGQRLQAPANPSRLPTRIVVFGVSSLPRQALEALYVLS 267

Query: 251 NHPNGAIVLPGLDCHIPTA---------IWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
                 + +                              +++       H Q++   L  
Sbjct: 268 RFSQVVLCVHNPCQFYWADIISDRELLTAERKRGRTHPTLSAIEDPDQLH-QHANPLLAA 326

Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE--------------- 346
           +    R+ ++ L    N    R    +        SD  N +                  
Sbjct: 327 WGKQGRDYIRLLDEFDNPDQYRGSFQTPDQKIDIFSDHGNPEAPRLLHQLQNDIHNLTPL 386

Query: 347 -----NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD----ENKKKSALITADRN 397
                 +     +    +A  +A + + E   +   L  + +       +   ++  D N
Sbjct: 387 REIRQQQRQLDVQQDHSLAFHQAHSPQREVEILHDQLLAAFNVDPTLRPRDVIVMVPDIN 446

Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           +       +        +  I   IS             L +L++          I +L+
Sbjct: 447 VYAPHIQAVFGRYQPGRKRHIPFTISDQGQRHHEPVLIALETLMSLPRSRFAVSEIISLL 506

Query: 451 KHP----LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD-----RIATQKN 501
           + P           E  L+R       +    +    + +DL + +        + +   
Sbjct: 507 EVPGIRDRFGINEDEIPLARRWVEGANIRWGLHGQHRESLDLPAELERNTWQSGLRSMLL 566

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT-YKTNKNSTCGNLSISDWTKLTVTC 560
              +   +     E       L   +   +   V   +T   +   + +  +W  L    
Sbjct: 567 GYGMGDDEPWAGVEPFGEIGGLQASLAGRLNDFVHQLETLWQALQTHRTPDEWEHLFSEM 626

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
           L             L      +    L   +               D++   +D   +  
Sbjct: 627 LGQFFHKVEGSDLLLLNRFRRQLEQWLEDALAAGLEEQTLPLNIVKDVLLEGLDEGGLNQ 686

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
           +      +     +  R + F  + L G+N+G +P++     F           ++  + 
Sbjct: 687 RFLAG-KVNFATLMPMRAIPFRKVCLLGMNDGDYPRSRPPVDFDLMAQDYRPGDRSRRED 745

Query: 681 IGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                    + +    L  +   R   ++     S  + +L               GQ  
Sbjct: 746 DRYL-FLEALLSARAQLYISWVGRSIKDDSERPPSVLVGQLQ----DHLDSLWSVSGQPE 800

Query: 739 LDWTRKLDYTTKQPHYKR-----------------PKPFPPLEAQPRTYSFSEIKQLIND 781
                 L        + R                   P P  E       F+  ++  + 
Sbjct: 801 TKVIEALTTQHPLQPFSRSYFPKANGLEEGGKGENSSPRPLAEVLEARRLFTYEREWRSA 860

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK----- 836
                A +          ++     D        I    ++R+     ++          
Sbjct: 861 HGGEAAAQTQSALPYQAPEEPISLNDLAAFLKKPIDTFYQRRLQVRFEDVEDDDTDNENF 920

Query: 837 --------QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                   ++ +   +   L    D                     +  +         +
Sbjct: 921 ELDGLDRWRLDNELIQDGLLKASSDEELHDRLQATLDR-----MARRGDLGMGVTEHRLR 975

Query: 889 MAIESI 894
             +   
Sbjct: 976 SELAGR 981


>gi|270307688|ref|YP_003329746.1| UvrD/REP helicase [Dehalococcoides sp. VS]
 gi|270153580|gb|ACZ61418.1| UvrD/REP helicase [Dehalococcoides sp. VS]
          Length = 972

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 106/889 (11%), Positives = 213/889 (23%), Gaps = 150/889 (16%)

Query: 172  LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG--- 228
            L             D L          L E            ++ +   ++     G   
Sbjct: 167  LDFNAVAAEDQDVGDLLIRI----RSGLREDQYIDFSLMIRDVVDSIRANVPGLENGIGN 222

Query: 229  --PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
               I++       P    L+  +        V+   D       W      +        
Sbjct: 223  LRHIMVDEYQDVNPCQEELVRLLHQRSQTLFVV--GDDDQSIYAWRGADVSNILGFQGRY 280

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
              ST         +  L         +   S+                    +  + I +
Sbjct: 281  RNST---------VHTLSQNFRSTAPIVQASDSFAAVL--------------LGPSRIAK 317

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406
            N   +      D+ ++   +   EA  +A  +R  L      +  I     L       L
Sbjct: 318  NPAASTNLIPQDLRVLWFPDRSTEAGWVAARIRDLLGTAYNDNGNIR---GLTPADFAVL 374

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
             R     +             +  T+ L  +       A       P          L R
Sbjct: 375  MRSTRQAEQDG------VPRHTAFTTALENLRIPFSLEAGGGPFDRPQTAVLRSTFELLR 428

Query: 467  AK---NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                                      + +   +       H P   SR+    ++L   L
Sbjct: 429  NVPLDRNAVQQHFNNEVILAYPDADFTALARVLTDWSRRIHRPQGSSRIRLRPQQLVYDL 488

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
            ++                       +  D     +     + +D      ++   +    
Sbjct: 489  LEAFNIA----------------QTNFGDDIMRDIGLFSRMIMDVETVYMSVDSRQRFSE 532

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            + +      ETG  +  + +                   ++   + +    + + L F  
Sbjct: 533  VLNFLQNAAETGYDVSTDDVL------------------QRPDAVTVSTVHKMKGLEFPC 574

Query: 644  LILGGLNEGVWPKNTAK--NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
            + +  +    +PK  +         VM S +N    +    +    F  A          
Sbjct: 575  VFIVDVEAHRFPKRRSSYSGWLPPGVMTSAINRGAYQSTPDEEIRLFYTAATRAERYLHV 634

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
            S  EN                             Q         +     P   +  P  
Sbjct: 635  SGAENLPQAR--------------RPARRSPYALQLATHPAVVQNAGGLPPGIVQATPRR 680

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
             +E      SF+EIK  +  P     R+   L+ +            G   H  I +L +
Sbjct: 681  RVEDADYPTSFTEIKYYLQCPRGYQLRQRYGLNPVIPEMFG-----YGQTVHTSIQKLHE 735

Query: 822  KRINKNTPEINHLMKQIIDSHF--------EKENLPPHIDIIWRHLFHKISHSFLE---- 869
               N    +    ++Q++   F              P      R+   +I+  ++     
Sbjct: 736  LYPNTPPSQ--DQVEQVVFDTFHLKHVPQSGDPVNRPGAYENSRNRAVEIAEDYVASFGA 793

Query: 870  -HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID-LLKSGFVD---ITDYKT---G 921
              E + Q       V    +  I +    ++G  D +    + G +    I D+KT   G
Sbjct: 794  DFERERQ-------VEAVFE--IPTSNCVISGSIDLLLHEDEHGEILHAEIIDFKTMEGG 844

Query: 922  DNPKKETAQKL--IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
            + P +        +  Q+ L A A             V  L                  +
Sbjct: 845  EAPAENDDLDWTELALQVQLYARAADQVMGQNTRTGSVHLL------------KDNQRIE 892

Query: 980  KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                 E    +L N+   VT +   + P    +R   +   + ++  + 
Sbjct: 893  VPITQEAVNAALSNIEWAVTGILGSDFP----MRPHPEKCGKCDFKAIC 937


>gi|325843346|ref|ZP_08167929.1| hypothetical protein HMPREF9402_2074 [Turicibacter sp. HGF1]
 gi|325489375|gb|EGC91748.1| hypothetical protein HMPREF9402_2074 [Turicibacter sp. HGF1]
          Length = 644

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/537 (13%), Positives = 153/537 (28%), Gaps = 116/537 (21%)

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL-----------G 632
            +  LF +++E G     +   +  +    ++  +      +   + +             
Sbjct: 1    MLELFEQLVEIGQEEAVSLENFATVFKAGLEEMSYATVPPRLDQVSVGELRRARYQLVTD 60

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAH 686
              E+         + G+NEG  P    ++  LS V +  L         + E+       
Sbjct: 61   LGEAGQYGIKHAFVLGVNEGQIPSVMGESSLLSEVEREQLKELGIELAPSLEQSQQDEQF 120

Query: 687  DFEMANGTRH--LIYTR-SLRENNIPTIASRWLQRL--------LVLGGTDFFDNLKKRG 735
                   +    L  +  S  +     + S    +L            G +F D+L ++ 
Sbjct: 121  ILYTVFTSPKQTLTLSYVSSNDEGKEFLPSYVYNQLKEMFPLSQEAHIGREFDDDLYEQL 180

Query: 736  QCYLDWTRKLDYTTKQPHYKR--PKPFPPLEAQPRTY----------------------- 770
                     L    KQ    R   +P      +                           
Sbjct: 181  TTLNQSVAHLLAHLKQNPAYRSYYEPLLAYYKEHNPLIYQMVMRILGYENEVTNLDEVLT 240

Query: 771  ----------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
                      S S ++      +A Y R  L+L      +   D    G L+H  +  + 
Sbjct: 241  KKLYSEEIVASVSRLELFNQCEFAHYLRYGLQLKDRE--RYQLDLPHIGELYHEALKRIA 298

Query: 821  K------KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-----HLFHKISHSFL- 868
                   +     T +    + +++     ++ L   +    R          + +  L 
Sbjct: 299  TMIQKENRTFADLTQDECQTLAKMVSDELSEQLLYKILKQNKRMMKLTERLTHVVYKTLI 358

Query: 869  -EHEEKIQSSIEKIFVNIPA------KMAIESIGI------HLTGFADRIDL--LKSGF- 912
                +  QS  + +F  +P        + I+S  I       L G  DR+D+   K    
Sbjct: 359  GLKYQSSQSEFKPMFFELPFQTGKSNGIHIDSRPIGKGFKLSLKGIIDRVDVAKSKDESQ 418

Query: 913  --VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQK 968
              + I DYK+     + +     +  QL      +   +   ID   +V  L Y  + + 
Sbjct: 419  AYLRIVDYKSSQQDLELDKVYYGLSLQLLTYLDVVVTNALQLIDMPAEVGGLLYFHVHRP 478

Query: 969  FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
                 I+ D +    D   E+ +  L +     +   + ++             +YD
Sbjct: 479  I----ISKDDQDLLRDVALEEQILRLHQ--EDFK--MKGYLP-----------DDYD 516


>gi|239982165|ref|ZP_04704689.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 1191

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/673 (9%), Positives = 166/673 (24%), Gaps = 64/673 (9%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV------------ 85
               +    V     T +A  EL     +   +     P   +                 
Sbjct: 57  GTGQVAPEQVLGLTFTNKAAGELAERVRKALTEAGVTEPEPLAPPGAGPQDEHTPGEPVI 116

Query: 86  --EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                F   LL  + L   +    RLL  A    +    L +         P + P    
Sbjct: 117 STYHAFAGRLLTDHGLRLGLEPSTRLLADATRFQLAARVLREA--------PGAHPALTR 168

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---------------GMWWLLAADFL 188
           +   L  +L  +   +       + L     +                       A   L
Sbjct: 169 SFPDLVGDLLALDGELSEHLVTPDRLRHHDEDLLGTLESTPLTNPDLRKLPEVARARHDL 228

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATA 243
               + +     + +                 H     L++     +++     +  A  
Sbjct: 229 AGLVEQYRSAKRDRDLIDFGDQIALSATLADRHPAVGALLREEFRVVLLDEYQDTSVAQR 288

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            L++ +  H  G  V    D       W   +  + +    +  ++     +   L    
Sbjct: 289 ILLAGLFGHGTGHPVTAVGDPCQAIYGWRGASVANLDDFPDHFPHADGTPAARHSL---- 344

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                        S        ++  +          +T +   +     +    V    
Sbjct: 345 -------------SENRRSGGRLLDLANTMAAPLRAMHTGVEALRPAPGAERDGIVRCAL 391

Query: 364 ADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            D   +E   +A  +   +       + A++         ++  L    + +++     L
Sbjct: 392 LDTHADELTWLADRIAHLVATGTPPGEIAVLCRTAGDFGAIQSALVDRDVPVEVVGLSGL 451

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                 + L ++   +       ++  L+  P  + G  +  L   +  L +   R   +
Sbjct: 452 LHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVRRERAGGD 511

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
             D    +++     A   +   +        +   +  +            L T   + 
Sbjct: 512 DPDRRLAEAVEGVDPAEVIS---LADALDTFLDGSADDELPFSAEARVRYAQLATELRDL 568

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
             +  +  +    ++  T    V L    +       E       + +            
Sbjct: 569 RRSLADPLMDVLHRVLATTGLEVELSSSPQALAARRRETLSNFLDVAASFAAQEKDASLL 628

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
           A           +           +T+ +L   +S+ L +D + + GL    +P    + 
Sbjct: 629 AFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVAKQFPSEQGRE 688

Query: 662 PFLSRVMQSDLNL 674
            + ++      +L
Sbjct: 689 KWTAQPRVLPHSL 701



 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 92/823 (11%), Positives = 188/823 (22%), Gaps = 65/823 (7%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            L+              A      + AL+   A+ L         +  +       A L  
Sbjct: 365  LRAMHTGVEALRPAPGAERDGIVRCALLDTHADELTWLADRIAHLVATGTPPGEIAVLCR 424

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD-----F 302
            T  +       L   D  +     + +                    + A L+       
Sbjct: 425  TAGDFGAIQSALVDRDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPR 484

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE-----NKIPNIQKCFS 357
              I   D+  LG  +  +  R               +   D  E     + +       +
Sbjct: 485  WRIGPRDLALLGRRARLLVRRERAGGDDPDRRLAEAVEGVDPAEVISLADALDTFLDGSA 544

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            D  L  +   R     +A  LR            +         +++EL+     +    
Sbjct: 545  DDELPFSAEARVRYAQLATELRDLRRSLADPLMDVLHRVLATTGLEVELSSSPQALAARR 604

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN----ALEL 473
               LS       + +   A  K    +A    ++         +  L   +N        
Sbjct: 605  RETLSN---FLDVAASFAAQEKDASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAH 661

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
             +     +   +  L +        ++  T  P         D            + +  
Sbjct: 662  KSKGLEWDVVAVPGLVAKQFPSEQGREKWTAQPRVLPHSLRGDAATLPDAGALDSKGLKA 721

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
                  +   T                L                  +             
Sbjct: 722  FTEQMRDHQHTEELRLGYVTFTRPRKLLLGSGHWWGPTQKRTRGPSDFLLALHDHCLAGH 781

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL---NFDTLILGGLN 650
              + + A   +       L +             + +     +      + D L  G L 
Sbjct: 782  GETEVWAERPDAAAQNPALAEPTADLAWPLPLDEVALDRRRAAAATVRAHLDALASGALA 841

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
                 +  A +  +             E    Q   +    +G      T        P 
Sbjct: 842  TSAIEEQAAPDAAVPAHPAPGEPDGPPEDLEPQPEDEESHEDGDWESWTTARPATTPPPV 901

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
              +  +                   +  L  +   D         R +        P + 
Sbjct: 902  AVTEAVTPATPAATYSAATEGPTPEEARLIHSWDQDLEALSGELLRARQGTRDVVLPASL 961

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK--KRINKNT 828
            + SE+ +L  DP    A     +   P          RGT FH  +    +  +    + 
Sbjct: 962  TASELMRLAADPAGFAAELARPMPRPPQP-----AARRGTRFHAWVESRFEDVQLPMLDP 1016

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
             E+      I D H                    +  +F + E   +     + V +P +
Sbjct: 1017 EELPGHDADIADEH----------------DLEALKEAFEQTEYAHR---TPLGVEVPFQ 1057

Query: 889  MAIESIGIHLTGFADRIDLLKSGF----------VDITDYKTGDNPKKETAQKLIDPQLS 938
            + +      + G  D +  L+S             +I D+KT      +        QL+
Sbjct: 1058 LTLAGR--TVRGRMDAVYRLESDTATGTGPQTPVYEIVDWKTSHTRDADP------LQLA 1109

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
            +   A        ++    A   YIR  +  +   +   ++  
Sbjct: 1110 IYRLAWAEHHRLPLEAV-TAAFVYIRTGETVRPRHLPGRREIE 1151


>gi|302384281|ref|YP_003820104.1| double-strand break repair helicase AddA [Brevundimonas subvibrioides
            ATCC 15264]
 gi|302194909|gb|ADL02481.1| double-strand break repair helicase AddA [Brevundimonas subvibrioides
            ATCC 15264]
          Length = 1160

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 80/815 (9%), Positives = 199/815 (24%), Gaps = 101/815 (12%)

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAGSTGSIPATARLM 246
            +        A          +                      ++I  +  + P    ++
Sbjct: 350  YEAAKERRGALDFGDLVARTVELLTVRSSAAWVLFKLDGGIEHVLIDEAQDTAPEQWDIV 409

Query: 247  STV-------------ANHPNGAIVLPGLDCHIPTAIWNTITE----------------- 276
              +                     V    D       +                      
Sbjct: 410  EALTEGFFSGIGSKRYGAGKVERTVFAVGDEKQSIYSFQGARPERLRQESQRYDVMVRGA 469

Query: 277  ----KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
                    + +S  +      +  A  +     +    + +G +   +  R        L
Sbjct: 470  GAAFAGVELATSFRSTPEVLSFVDAVFVSPERTRSLVGETVGAIPAHIAKRVDDHGCIDL 529

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI-------SIAIALRMSLDEN 385
             P  +D +  +      P  Q+         A +   E         ++      +L   
Sbjct: 530  WPLYADEKPPERDAWDDPLDQEPVQSARKRMAADLAREIRRQVMAGVAVQDRKTRALRPC 589

Query: 386  K--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                   L+         +   +   G+ +  +  + LS+ +    L ++       +D 
Sbjct: 590  GYGDFLVLVRRRDATFEEIIRAMKAVGVPVAGADRLKLSSHIAFDDLIAVARVALYPDDE 649

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            +++A +++ PL            A ++L  +A    K       L++   +  +  + + 
Sbjct: 650  LSLAGVLRSPLCDIPDD-----GAADSLYELAGADPKRKRLWAALQARAGEHPSWGRAHD 704

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
             +    +  S +       L++ I             +       +I +     +   Q 
Sbjct: 705  LIDFAIASSSRDPFAFFAGLLNRIDATGLSGRARILARLGREAEEAIDETLNQVLAAEQR 764

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP--K 621
              +D    L  L        +             +  +  + ++    ++   T K   +
Sbjct: 765  GGIDLETCLSMLET--ADVEVKREMEGARGEVRVMTVHGAKGLEAPVVILPDTTAKAKAQ 822

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                  + +    E  L+               P +  ++   S   ++    +  ++ +
Sbjct: 823  GPTLMPVELDDGAEGWLMC--------------PGSEKEDCEASGEARTARQTRVDDETL 868

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                     A   R +I  R   ++ +      W   L                      
Sbjct: 869  RLLYVALTRA-RDRVVILGRGSAKSKLGYDEGSWWAVLTETFERLGGQVRDIGDGRRRFG 927

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
               +               P           S   + ++   A   +R+     +     
Sbjct: 928  VDPVVMAAGVASAIPGVTVPDWARAMPPVDPSA--RYVSPSQAKAVKRVSAPSPLAVAGA 985

Query: 802  DPDRTD----RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
            D         RG L H ++  L +            ++ +               D+   
Sbjct: 986  DGGAPLGRFRRGDLIHLLLERLPEIEAAARPDAPRRMLAR-------------ERDLSEA 1032

Query: 858  HLFHKISHSFLEHEEKIQS--SIEKIFVNIPAKMAIESI--GIHLTGFADRIDLLKSGFV 913
                 I+ +F   E+   S          +    +   +  G+ ++G  DR+ +     V
Sbjct: 1033 QRDEMIAAAFAVLEDARFSAVFGAGSRAEVALTGSAPGLPAGVSISGRIDRLVVTPE-RV 1091

Query: 914  DITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKA 946
             + DYKT          A      Q+++  A LK 
Sbjct: 1092 LVVDYKTNRPAPDRIEDADPAYVAQMAVYVAVLKR 1126


>gi|149178399|ref|ZP_01856989.1| UvrD/REP helicase [Planctomyces maris DSM 8797]
 gi|148842716|gb|EDL57089.1| UvrD/REP helicase [Planctomyces maris DSM 8797]
          Length = 1171

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 88/933 (9%), Positives = 248/933 (26%), Gaps = 97/933 (10%)

Query: 81   LGDVVEEKFTADLLLSYNLNPPVSN-IQRLL-----ELARLILIWRNKLPDIIKDL--YP 132
            L ++ E   T  LL   N + P +  +++        +  LI        +++  L  + 
Sbjct: 215  LAEIAESDATLHLLRLMNSHEPSNPKLRQRFQTLKSRIPELIDGAPQMRGELLGTLIDHA 274

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIET------EEKKWEDLHALKNEKYGMWWLLAAD 186
            +          + + + + + D    +        E    +    L   ++ +  L  ++
Sbjct: 275  KIQGGGTKKDWDDVSIYEQIRDGFKELRETLKPVYETLSPDPAGFLAAAEFSLVVLRVSE 334

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAE--AEHLMKGTKGPIIIAGSTGSIPATAR 244
            +     +        L+    +     L R +  A          +++     + P  + 
Sbjct: 335  YAAKCYQESKAEKGLLDFDDLLLQTRDLFRRDPNARQRAAAGIHYLMVDEFQDTDPVQSE 394

Query: 245  LMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            ++  +         +    D       +     +  +              S        
Sbjct: 395  IVRALCGKELLTGKLFLVGDAKQSIYRFRRADPEVFHQLRQEIPEKGRLPLSTNFRSQPA 454

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
             +   +      +++     +    +   P    +       +  I              
Sbjct: 455  ILNFTNCLFASAMAHYYESLTPFDQQQHSPTPGIEFLFASPDDPDIKLADAI-------- 506

Query: 364  ADNEREEAISIAIALRMSLDEN--------------------KKKSALITADRNLARRVK 403
                  EA  IA  +R  L++                          ++    +     +
Sbjct: 507  ---RETEADWIAARIRQLLEDETPRIWSKNPQSGERELRRVEPGDICILFRSLSSVSLYE 563

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L    ++  +  G           L++L   +   +D +++  L++ P         Y
Sbjct: 564  KALQEHNLDYYLVGGRAFYAQQEIYDLSNLCQYLDSSDDELSLLGLLRSPFFSLSDDTIY 623

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                    E +         D +  +     R A       +   +++         + L
Sbjct: 624  --AITRHAESLTAAMQVAPPDHVRPEQKRQVRYAQAV----LQELRTKKDRLSLVELLNL 677

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                      L+              + +  +           D  +++ +   EE  + 
Sbjct: 678  ALERTGYDAALLNEFLGDRKLANLRKLIELARNFEASGLFTLKDFVQRIRDSILEESKEE 737

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            L++   +  +    +  +  + ++    ++     + +                 L  + 
Sbjct: 738  LAATLPETSDVIRLMTIHQSKGLEFPVVIVADMDRRSQGASKDPFLHPEWGALLNLPAER 797

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-KYIGQAA-HDFEMANGTRHL-IYT 700
             +          +   +N      ++      T    Y+  +A   ++    +  + + +
Sbjct: 798  GVTPENFAFKMHRAIEQNADEDETVRLLYVAVTRAADYLILSAGLPYDRRVQSPWMKLLS 857

Query: 701  RSLRENNIPTIASRWLQRLLV----LGGTDFFDNLKKRGQCYLDWTR---KLDYTTKQPH 753
            R    +        +L    +                R Q      +   +L  +     
Sbjct: 858  RHFDLSTGLPTLDPYLGHFTMGNVQQDQIPEIRVHLNRPQTATKPAKKIKELKPSQFWAA 917

Query: 754  YKRPKPF---------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
             ++  P           P + +   +S S ++        +   +  +L        D +
Sbjct: 918  LEQGSPGGYPETFTVFAPQKNRQSHFSVSHLEVADALIQELPEPQYQRLSTADLLNAD-E 976

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQII---DSHFEKENLPPHIDIIWRHLFH 861
             T  GTL H++I  L     +   PE +  + +++         + L P I         
Sbjct: 977  ATQLGTLTHSVIERL-----DPLKPEQSDRIVELVLFDQPQVAGDKLKPLIQ-------Q 1024

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFADRIDLLKSGFVDIT 916
            +I+  +         +    +  +   + + +       + +TG  D +         + 
Sbjct: 1025 QIAAWYESEICSALKAARVHYRELEFLLRLPATSDKESAVTVTGMIDAVYQTDDQRWVVL 1084

Query: 917  DYKTGDNPKKETAQKL---IDPQLSLEAAALKA 946
            DYKTG    +   ++L    + QL +   A++ 
Sbjct: 1085 DYKTGARLAQLADEELISEYEFQLGVYTLAVEQ 1117



 Score = 42.2 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 84/297 (28%), Gaps = 37/297 (12%)

Query: 37  DPLNPLLLASVTIYVPTKRAIQELRSEFIE-----------------ITGKKSTILPIIK 79
               P  L+ +     T+RA +E+R    E                     +      I 
Sbjct: 46  PGAPPDRLSHIVAITFTERAAREMRDRIRETCLDQLKNCPPEEVNHWQAVIRGLDSARIS 105

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
           ++         +  + +  L+P    +++      L  +    + +++K    +    + 
Sbjct: 106 TIHSFCTSILRSHAVSA-RLDPHFGLLEQGTSDTFLRKVVHEAVHELLKQENADCIQMVY 164

Query: 140 I-SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                    L  +L       +    ++++   L  E+         DF +    Y   +
Sbjct: 165 RFGLEKTYELLISLVP-----QQFRLEFDEFRELTPEQLAG---RMRDFWE--QNYIPMQ 214

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIAGSTGSIPATARLMSTVA 250
           L E+  S    + + LM +      K  +         P +I G+          +   A
Sbjct: 215 LAEIAESDATLHLLRLMNSHEPSNPKLRQRFQTLKSRIPELIDGAPQMRGELLGTLIDHA 274

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
               G       D  I   I +   E    +     T S  P   LA     L + R
Sbjct: 275 KIQGGGTKKDWDDVSIYEQIRDGFKELRETLKPVYETLSPDPAGFLAAAEFSLVVLR 331


>gi|304390837|ref|ZP_07372789.1| possible UvrD/REP helicase [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
 gi|304325720|gb|EFL92966.1| possible UvrD/REP helicase [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
          Length = 1164

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 114/1033 (11%), Positives = 241/1033 (23%), Gaps = 115/1033 (11%)

Query: 45   ASVTIYVPTKRAIQELRSE---FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              + +  P   A + L          +     +L    S G V E     +        P
Sbjct: 71   PRMLVLSPNAGAARRLSERALEIRAKSEDPGCLL--GVSKGFVAEVFARFNQWRKTEGLP 128

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             V        + ++         +       E+             +     D +     
Sbjct: 129  EVRLATDAEVMVQIQDFLAEMPLEEELRAALETQGFRRDLVDGIFRVRAFAGDALSDSAA 188

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                      +K  +       +          W      L         +  ++A A  
Sbjct: 189  SPVHPLVTRLIKAMQSDREAKRSQAR----QSAWPLDTASL-----FEEYLLAVKAGA-- 237

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                    + I            ++S  A   +G  ++           +   T   +  
Sbjct: 238  ---PVPELVGIDDLQNFNGLMIDILSLWA--THGTTLVACTLPETCVNTFRGATPHLSER 292

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                              ++ L  K      L         R  V   S    +++   +
Sbjct: 293  LWQQLETIPG-----KGAIEILLTKEHVPAPLRQAWRIAVNRLGVHGISARLWNSAQESS 347

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITADR 396
                E            + L+E   +  +   I   L+ +   + +       A++T   
Sbjct: 348  PASTETDSLCDADGRDRIILVEKSTDTAQYQEIGTLLQDAHIFSDRPLKYSQMAVLTRSS 407

Query: 397  NLARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFK------LNDFMAIATL 449
              AR+V   L    I + +      L+    +  L  ++ A+            + +A L
Sbjct: 408  REARQVAEVLENMDIPVVVPGATGQLNEGRLTRYLLKMMQAVCVEDCDQVKLSDLDLAGL 467

Query: 450  VKHPLAKFG-------FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            +   L  +            Y  R +   +     G+    D  D        I    N 
Sbjct: 468  LSSALVGWDVWRMRRMDSSLYDLRLQPPADSENAAGSTGVMDSADTADDEEGGIQIVGNL 527

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
             ++  +  ++     + +   V  I+  +           +             +V  L 
Sbjct: 528  PYIQQFLRQVISGQNDFSGRSVPEIISALPDAAQLVDLAQALQSGWQQWKADSGSVQLLL 587

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL---------- 612
                D   +   L        L       ++    +  +  +  D               
Sbjct: 588  WKLWDGLGRGEILQARALQPGLVPAVRSTLQIDLDLVMDLFKAADWFEARNPGKTAADFA 647

Query: 613  -------IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                   +   TV P       + ++    +   ++  + + GL +G WP        L 
Sbjct: 648  QGMLARDLPTGTVAPHHLVKDAVTVVSAAATVSQHWPLVAVVGLTDGNWPAMRWPGSILG 707

Query: 666  RVM--QSDLNLKTAEKYIGQ-------AAHDFEMANGTRHLIY--TRSLRENNIPTIASR 714
              M    +    T     G          H F         +   T +       T  + 
Sbjct: 708  SSMFELENYGDPTNSSSAGYLWNWQNEYRHFFTALTRCTQRLILGTTAQDGVGRSTFLTS 767

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD------YTTKQPHYKR-----------P 757
             +Q L +            R          L         T                  P
Sbjct: 768  LVQTLQLEPKQHRRLPTNLRDFVAYLRAACLGGETSWGTPTIDAPIAAGLLAKLAAGDCP 827

Query: 758  KPFPPLEAQPRTYS------------FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
               P         S             S +++ + +P            +          
Sbjct: 828  SAHPENWIGALPVSGDETESAEIRIYASGLERALENPLDYVLSWS---GYSNDEDDPYAA 884

Query: 806  TDRGTLFHNIIT----ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
               G + H            +            +   +     +   P   +      F 
Sbjct: 885  NKVGNIVHEAAEILGRRYWWEGHGPRDDLEFEQVLTELRQEVRRLLGPLSGETWVESNFR 944

Query: 862  KISHSFLEHEEKIQSSIE-KIFVNIPAKMAIES----IGIHLTGFADRIDLLKSGFVDIT 916
            +   + L        + +      +     +E+      +      DR+ +   G V I 
Sbjct: 945  RHIETCLVPLATFLVNHQYPSRFEVRYPCRLEASSGKGALVYNARIDRV-MFAHGRVIIM 1003

Query: 917  DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
            DYKTG+      A+   + QL+L  AA  A    Q     +A +  +++    K    T 
Sbjct: 1004 DYKTGNPSNFSAAKVAANLQLALYQAAYNASPDGQKQPCDMAEIVALQVPPDSKKLYSTQ 1063

Query: 977  DKKKYSADELSEK 989
              ++    ++  +
Sbjct: 1064 GIEEPREPKVWAQ 1076


>gi|153213950|ref|ZP_01949146.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae 1587]
 gi|153828183|ref|ZP_01980850.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae 623-39]
 gi|124115603|gb|EAY34423.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae 1587]
 gi|148876272|gb|EDL74407.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae 623-39]
          Length = 1148

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 113/985 (11%), Positives = 241/985 (24%), Gaps = 133/985 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W       +    Y      
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179

Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             +           +      +         + I G +   P     +  +  H +  ++
Sbjct: 180 GHSIYHRANLYQRFIEQLVSGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297
           L     H    I +                                     + Q SL   
Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTVGSEVSPLKGDVENYLQESLHLS 299

Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342
                 LL  +     D   L   +++                 I    L          
Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIDIQRDSLLHHIQADILHLQEHQDDAK 359

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                  P+I      + +    +   E   +   L    + +     +   ++  D N 
Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         I   IS       +   +    LL           +  L++ P
Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479

Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496
             +A+F   E+  + AK  +E   +R   NS    +                + L+   +
Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +     +         + + ++  L   +   +  L   ++    T        W   
Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGISAELAGKLAHFVETLSELRSQLAQTQSMEQWRYWLNE 599

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L  +    +L +L  ++ + G     +      ++T  + G 
Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  ++
Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731
             +          + +    L  +   R   +N   + S  +  LL     +     D  
Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEH 772

Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762
            +           L                     +     R +             +  
Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819
             + P      E+++    P   + +R LK+     +   + D      G   + +  EL
Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           ++  +          +          +   P        L      +    E+      +
Sbjct: 893 VENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952

Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900
            +       + +    +   + L G
Sbjct: 953 PLDDE-EIDLRLQPFDDGREVLLRG 976


>gi|148828119|ref|YP_001292872.1| exodeoxyribonuclease V subunit gamma [Haemophilus influenzae
           PittGG]
 gi|148719361|gb|ABR00489.1| hypothetical protein CGSHiGG_08275 [Haemophilus influenzae PittGG]
          Length = 1126

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 116/981 (11%), Positives = 249/981 (25%), Gaps = 138/981 (14%)

Query: 39  LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94
           L P        I V +    Q L+ E  + TG  + +   +P        + +   A  L
Sbjct: 24  LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
            +  L  P      +  L RLI I+  K  +    L      S          L+  +AD
Sbjct: 78  PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135

Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + D       +W             + +   +       +       K   + W   +V+
Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNDTLFAQIQGNTKWQGELWRALVVD 195

Query: 202 L-----NASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
           +     +A+         +   A+    K     I I G      A   ++  +++  + 
Sbjct: 196 VKSDVGDATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297
            +            I +   +   +            Q   +                  
Sbjct: 256 HLFFNNPCQEYWGDISDLRFDYLRSRKRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315

Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                          +                 Y  +                    LEN
Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
           K  NI K    + L    +   E   +   L    +++     K   ++ AD N      
Sbjct: 376 KPLNITKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSLTPKDVVVMVADINQYTPYI 435

Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             +          I   +S      + +  S   +LL           +  L+  P  + 
Sbjct: 436 QAVFGQKNGDAPQIPFSLSDNKLSESDVLVSSYLTLLRLKESNFSAEDVLALLDIPAMRE 495

Query: 458 GFPEKYLSRAKNALE----------LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            F                            G   +     L+ ++L     ++       
Sbjct: 496 RFNISLADLPLVREWVTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                S   K      + H    ++ L       +      SI  W ++    L +  + 
Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSVLHETLQQAH------SIEKWQEILTALLSDFFVR 609

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624
                  +++ +         +++ E    I  N     ++I  +I     +        
Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTIHFNEELQAEVIADVITMKLEDAPNSLKFL 663

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           +  +     L  R + F  + L G+N+  +P+    N F           +         
Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722

Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---- 737
               E     R     +   R   +N P   S  + +LL        +N+    +     
Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQKENVLTVIEHPMTA 781

Query: 738 ----------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                              W     + T   + +          +        +   + +
Sbjct: 782 FSPDNFKYNEKFTRSFATKWLPIAQFDTAASNSEFAVTMTETLEKIEEIEVDSLVSFVEN 841

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQII 839
           P   +  + L + F    ++  D                   ++      ++ +L +Q  
Sbjct: 842 PVKFFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYSLNNDLIYLDEQNF 890

Query: 840 DSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----S 893
             +F +  +   +            I  + LE ++KI    E    ++   ++++    +
Sbjct: 891 ADYFRQAEVKGVLPRAEFGKVYAENIRDNVLEFKKKIADLGEAKHASVDFNLSVDWQNEN 950

Query: 894 IGIHLTGFADRIDLLKSGFVD 914
             I L G+ D +    S  + 
Sbjct: 951 QKIRLFGYMDALFGDDSQVIH 971


>gi|153801062|ref|ZP_01955648.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae MZO-3]
 gi|124123416|gb|EAY42159.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae MZO-3]
          Length = 1148

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 115/985 (11%), Positives = 247/985 (25%), Gaps = 133/985 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W       +    Y      
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179

Query: 201 ELNASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             +           +   A            + I G +   P     +  +  H +  ++
Sbjct: 180 GHSIYHRANLYQRFIEQLASGNFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLL 239

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297
           L     H    I +                                     + Q SL   
Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVENYLQESLHLN 299

Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMYGRS--MVISKSFLPPDTSDMRNTDILENKI- 349
                 LL  +     D   L   +++        +   S L    +D+ +    ++   
Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359

Query: 350 -------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                  P I      + +    +   E   +   L    + +     +   ++  D N 
Sbjct: 360 FASSCHKPCIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         I   IS       +   +    LL           +  L++ P
Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479

Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496
             +A+F   E+  + AK  +E   +R   NS    +                + L+   +
Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +     +         + + ++  L   +   +  L   ++    T        W   
Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L  +    +L +L  ++ + G     +      ++T  + G 
Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  ++
Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731
             +          + +    L  +   R   +N   + S  +  LL     +     D  
Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772

Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762
            +           L                     +     R +             +  
Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819
             + P      E+++    P   + +R LK+     +   + D      G   + +  EL
Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           ++  +          +          +   P        L      +    E+      +
Sbjct: 893 VENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952

Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900
            +       + +    +   + L G
Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|229524318|ref|ZP_04413723.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae bv. albensis
           VL426]
 gi|229337899|gb|EEO02916.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae bv. albensis
           VL426]
          Length = 1148

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 114/985 (11%), Positives = 242/985 (24%), Gaps = 133/985 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W       +    Y      
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179

Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             +           +   A  +         + I G +   P     +  +  H +  ++
Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297
           L     H    I +                                     + Q SL   
Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVENYLQESLHLS 299

Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342
                 LL  +     D   L   +++                 I    L          
Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIDIQRDSLLHHIQADILHLQEHQDDAK 359

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                  P+I      + +    +   E   +   L    + +     +   ++  D N 
Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDSSLKPRDVIVMVPDINA 419

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         I   IS       +   +    LL           +  L++ P
Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479

Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496
             +A+F   E+  + AK  +E   +R   NS    +                + L+   +
Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +     +         + + ++  L   +   +  L   ++    T        W   
Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L  +    +L +L  ++ + G     +      ++T  + G 
Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  ++
Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731
             +          + +    L  +   R   +N   + S  +  LL     +     D  
Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772

Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762
            +           L                     +     R +             +  
Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819
             + P      E+++    P   + +R LK+     +   + D      G   + +  EL
Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           ++  +          +          +   P        L      +    E+      +
Sbjct: 893 VENLLACCDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952

Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900
            +       + +    +   + L G
Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|192360802|ref|YP_001982657.1| UvrD/REP helicase domain-containing protein [Cellvibrio japonicus
            Ueda107]
 gi|190686967|gb|ACE84645.1| UvrD/REP helicase domain protein [Cellvibrio japonicus Ueda107]
          Length = 1163

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 109/950 (11%), Positives = 239/950 (25%), Gaps = 109/950 (11%)

Query: 58   QELRSEFIEITGKKSTILPIIKS-LGDVVEEKFTADLLLSYNLNPPVSN--IQRLLELAR 114
            + LR            +     + L D  E K     LL     PP     +   L L  
Sbjct: 238  RLLRRALSYHASDLCALADRAATNLQDEGERKNRIHELLGITHLPPTEPEALPHWLALVD 297

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA--- 171
            L+      L +        +      +      L +  A  I ++  +    E L A   
Sbjct: 298  LL------LTNGGTYRARLTKSEGFPTGKAGAELKEQFAGFIAVLREQNPDLETLLADTR 351

Query: 172  -LKNEKYGMWWLLAADFLKIASKYWTERL----VELNASSPVGYQIALMRAEAEHLMKG- 225
             L    Y        + L          L     +L A+       A + A  +      
Sbjct: 352  LLPPVAYAPEQWALLESLTQLLPQLAAELMLVFKQLAATDYSAISQAALLALGDEDEPTD 411

Query: 226  -------TKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTIT 275
                       I++     +      L+  +       +G  +    D       +    
Sbjct: 412  LALKLDYRIRHILVDEFQDTASPQLELLRKLTQGWQTGDGRTLFIVGDGMQSCYGFRNAN 471

Query: 276  EKSTNITSSNTTYSTHPQYS--LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
                         +   +             +     +            +         
Sbjct: 472  VGLFLDARQQGIGNVALEAVDLCVNFRSQAGVVDWVNQVFAKAFPAQDDIARGAVHYSPS 531

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVAL--------IEADNEREEAISIAIALRMSLDEN 385
                 +     ++  I        +  L        I+   +RE A  +A+  +   +  
Sbjct: 532  TAFKPLLANPAVQLHIAAYTSGDDEDDLQTGNTAGSIQQARQREAAQVVALVRQAKAENP 591

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
            +   A++   R   R +   LT  G+N   +    L+T +    L +L  A+   +D ++
Sbjct: 592  QGSIAILVRTRTHLREILPALTTAGLNYQATEIDRLATRMAILDLRTLTRALLDPSDRIS 651

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
               L++ P       + +        E      N        +                 
Sbjct: 652  WLALLRAPWCGLTLNDMHALANTRLPESHTDNANDWPLLWPQILHHQQ------------ 699

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                             +       +  L     N         +  W +        + 
Sbjct: 700  --------------ITSISADGHTRLEKLRQVLANAWENRLRKPLRQWIEG-----VWLA 740

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
            L     L +    +  ++  +L  K    G  +   A        + +      PK +  
Sbjct: 741  LGGPACLVDANECDNVQSYLTLLDKHENAGRILDWQA------FNQALQQLFAAPKADAD 794

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQ 683
              L ++   +S+ L FDT+I+ GL         +   +  R+ +      L  +   IG+
Sbjct: 795  PLLQVMTIHKSKGLEFDTVIIPGLERANRGDEKSLLLWQERINRQGERQLLLGSFAPIGK 854

Query: 684  AAHDFEMANGTR-------------HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
                      +              ++  TR+++   +   A +    L + G       
Sbjct: 855  DKDPLYSFMRSEADKQQQFEATRLLYVGCTRAIKRLYLLGCAKQTEDGLQLSGKRSLLAC 914

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
            +  + Q       +         +  P    P + Q     ++             +  I
Sbjct: 915  IWPQVQDQCHLIEQEHQQQNLRTHPLPLLRLPSQWQAPPMDYTSPLASYRGR-DFRSDPI 973

Query: 791  LKLDFIPHFKKDPD--RTDRGTLFHNIITELIKKRINKNTPEINHL---MKQIIDSHFEK 845
                 +P  +   +      G L H  + + +++R+     +I+     +  + +S   +
Sbjct: 974  ANPRNLPELENRRNRLARHTGILIHRALQDWVERRLLPGGEDIHAYCACLYPLWNSSLHQ 1033

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLTGFA 902
                            +   + L                   +   +  ++ G+      
Sbjct: 1034 RGWARDEIDQSLEKITRALSTTLNDPHGQWLLNPDHLDSQCELAL-VEHDTQGVREH-II 1091

Query: 903  DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-------QLSLEAAALK 945
            DR  +   G   I DYK+ +    E+    +         QL+     + 
Sbjct: 1092 DRTFIDG-GERWILDYKSSEPEGGESVAAFVARERELYQGQLARYRELMA 1140


>gi|145638236|ref|ZP_01793846.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae PittII]
 gi|145272565|gb|EDK12472.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae PittII]
 gi|309751391|gb|ADO81375.1| Exodeoxyribonuclease V, gamma chain [Haemophilus influenzae R2866]
          Length = 1126

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 121/982 (12%), Positives = 252/982 (25%), Gaps = 140/982 (14%)

Query: 39  LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94
           L P        I V +    Q L+ E  + TG  + +   +P        + +   A  L
Sbjct: 24  LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
            +  L  P      +  L RLI I+  K  +    L      S          L+  +AD
Sbjct: 78  PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135

Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + D       +W               +   +       +       K   + W   +V+
Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITAQIQKQQPNLNATLFAQIQGNTKWQGELWRALVVD 195

Query: 202 L-----NASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
           +     +A+         +   A+    K     I I G      A   ++  +++  + 
Sbjct: 196 VKSDVGDATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNT--TYSTHP--------------------- 292
            +            I +   +   +             P                     
Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQDEDQPLFSEDQLSQLENAQFDVTYQK 315

Query: 293 ---QYSLAKLLDFLDIKREDVKRLGNVSNEMY--GRSMVISKSFLPPDTSDMRNTDILEN 347
              Q     L  +  + R+ +  L      +     +                    LEN
Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
           K  NI K    + L    +   E   +   L    +++     K   ++ AD N      
Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSPTPKDVVVMVADINQYTPYI 435

Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             +          I   +S      + +  S   +LL           +  L+  P  + 
Sbjct: 436 QAVFGQKNGDAPQIPFSLSDNKLSESDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495

Query: 458 GFPEKYLSRAKNALE----------LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            F                            G   +     L+ ++L     ++       
Sbjct: 496 RFNISLADLPLVREWVTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                S   K      + H    ++ L       +      SI  W ++    L +  + 
Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQSH------SIEKWQEILTALLSDFFVR 609

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624
                  +++ +         +++ E    I  N     ++I  +I     +        
Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTIHFNEELQAEVIADVITMKLEDAPNSLKFL 663

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           +  +     L  R + F  + L G+N+  +P+    N F           +         
Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722

Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---- 737
               E     R     +   R   +N     S  + +LL        +N+    +     
Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQAKEPSVLVSQLLDYINQGQKENVLTVIEHPMTA 781

Query: 738 ----------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                              W     + T   + +          +        +   + +
Sbjct: 782 FSPDNFKNNEKFTRSFATKWLPIAQFDTAASNSEFAVTMTENPEKIEEVEVDSLVSFVEN 841

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQII 839
           P   +  + L + F    ++  D                   ++      ++ +L +Q  
Sbjct: 842 PVKFFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYSLNNDLIYLDEQNF 890

Query: 840 DSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----S 893
             +F +  +   +            I  + LE +EKI    E    +I   +A++    +
Sbjct: 891 ADYFRQAEVKGVLPRAEFGKVYAENIRDNVLEFKEKIADLGEPKQASIDFNIAVDWQNEN 950

Query: 894 IGIHLTGFADRIDLLKSGFVDI 915
             I L G+ D +         I
Sbjct: 951 QKIRLFGYMDALF--GDNSQVI 970


>gi|227892522|ref|ZP_04010327.1| ATP-dependent exonuclease subunit B [Lactobacillus ultunensis DSM
           16047]
 gi|227865643|gb|EEJ73064.1| ATP-dependent exonuclease subunit B [Lactobacillus ultunensis DSM
           16047]
          Length = 1160

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 80/707 (11%), Positives = 184/707 (26%), Gaps = 107/707 (15%)

Query: 354 KCFSDVALIEADNEREEAISIAIAL---RMSLDENKKKSALITADRNLARRVK-LELTRF 409
                V L++AD+   EA  +A  +               ++  D           L + 
Sbjct: 295 DELDQVQLVKADSRYAEAYFVARTIYQQVALGKFRYHDFLVLAPDLKEYETYLIPILRQH 354

Query: 410 GINIDISAGIPLSTTLHSSILTSLL---NAIFKLNDFMAIATLVKHPLA--KFGFPEKYL 464
            I         +       ++ SL    +          +  ++K  L    +   E   
Sbjct: 355 HIPFFNDLQQEMKYHPLVVLIESLFNLRDLKDNPFQTSNMLAILKTHLLIPSWYKEEAEY 414

Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
               + LE   L    N       +      +  +         +    +  +   V  V
Sbjct: 415 IHDVDELENFVLAHGINHGLW---RKSFSHFVDAEVIRLDKMDEEVAKIDRLRGYLVDKV 471

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
             + + +      +         L+ +                   +      E+    L
Sbjct: 472 TTLFESLGGEEDSQKALTIFFDFLTQNGVAAKLEQWRDAANEAGDLQQAQQ-PEQLWDLL 530

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             L    +      K +  E+ +++                  + +      +   ++ +
Sbjct: 531 IQLLKDYLTINPE-KFDLEEFFNMLINAFKEANFSQIPSTLDAVNLSEMGMVQTSGYEQV 589

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYIGQAAHD---FEMANG 693
            + G   G  P       FL+    + L         L+  ++      +      ++  
Sbjct: 590 FIIGATSGNLPAIQKMPGFLTTENLNQLQTSFDSDSYLEDNQQLNNLDQNYQFGLSLSLA 649

Query: 694 TRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFD-NLKKRGQCYLD----------- 740
            + +  +  +   +  ++  S + +RL   G  +F+  +L ++ Q  L            
Sbjct: 650 QKKVYVSYPVLNASNESLDPSIYYKRLESYGAHEFWQHDLPEKMQDLLSFITNPDSSLGY 709

Query: 741 ------------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTY-----------------S 771
                           L+ T K    K        +   +                   S
Sbjct: 710 LAYMNSINSSKTIDELLEITQKALPQKTDDILKASQFDNQPEDIGQDLASQLYGQNLNSS 769

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            S+++    + Y  +    LKL     F+ + D    G  FH     L+K+   ++    
Sbjct: 770 VSQLETFYENSYEYFLTYGLKLRKR--FENEFDVIQAGNYFHETFDRLVKQLNKRHLDLA 827

Query: 832 ------NHLMKQIIDSHFEKENLPPH-----IDIIWRHLFH----KISHSFLEHEEKIQS 876
                    M   +    + E           +            K++H++ +   K  +
Sbjct: 828 DLNSVELEQMLNSVRDVMKDEGKYAQLMNDPFNQYLFKCLDHTTSKVAHNWRKSLTK--T 885

Query: 877 SIEKIFVNIPAKM---------AIESIG----IHLTGFADRIDL---LKSGFVD--ITDY 918
            +   +  +   +          +  +     + L G  DR+DL     +  V   + DY
Sbjct: 886 PLRAKYSELSFGIGEKIKGLSFEVPDLSGVHKVDLRGKMDRVDLANFTDNSQVLAQVIDY 945

Query: 919 KTGDNP-KKETAQKLIDPQLSLEAAALKAGS--FSQIDCRKVANLFY 962
           K+             I  Q+      L      F+  +   +   FY
Sbjct: 946 KSSAKKFDLGMFYNGIALQMVSYLDVLIKNGQFFAGDEQLSLLGAFY 992


>gi|261492785|ref|ZP_05989333.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261311638|gb|EEY12793.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 1096

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 98/967 (10%), Positives = 235/967 (24%), Gaps = 131/967 (13%)

Query: 21  MIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS 80
           +   L+    V     DP  P      TI + ++   Q L+ +  E+ G           
Sbjct: 13  LAEMLVKIQQVNPLE-DPFEPE-----TILIQSQGMAQWLQMQIAELNG----------V 56

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
           +G+      T  L   Y L  P    + + E + L+      LP  +             
Sbjct: 57  MGNCDFLYPTTFLWQQYRLLFPELPKENIFERSSLVWRIMRLLPSCLTLSEFAPLKRYLG 116

Query: 141 S-------PANAIWLAKNLADIIDIIETEE----KKWE---------------------- 167
                         L+  +A++ D            WE                      
Sbjct: 117 DQPNKEQYQLKLYQLSAKIAELFDQYLVYRPHWLVSWEEGNLQAIENEIKIATAAKPIDF 176

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
           DL     +     W      L+  S    +     + +       A +    E       
Sbjct: 177 DLIRADMKWQSHLWQQIVSDLQSESD--EQVFTTSHRAYLQQNYFAKLDDLTETEKAKLP 234

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP-----TAIWNTITEKSTNIT 282
             I I G +   P    +   ++ H +  +                 +W  +    ++  
Sbjct: 235 KRIFIFGISSFSPLQLAVFKKLSEHCDIHLFFFNPSEKYWGDSVEEKVWQKL--ALSHKI 292

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
           S +   +   +     L  +    R+ + +L           +   ++           +
Sbjct: 293 SQDDLDNLLAEQRNKLLNLWGKQGRDFLAQLIEFEPNTMDVFVEPEENSNLNKLKKQIFS 352

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
              +  I ++    + + +    +   E   +   L    +++     K   +++ D N 
Sbjct: 353 LENDATITDLT-ADNSLQIHSCHSPMREVEVLHNQLLNLFEQDSTLLPKDIIVMSPDINK 411

Query: 399 ARRVKLEL---------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                  +             I   +S                LL       +   +  L
Sbjct: 412 YAPYIDAVFSRYNTGNREPRYIPFSLSDQAFTQVDPIIHSFLQLLAMKESPFNAEELFDL 471

Query: 450 VK----HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           ++         F   + +  R       V            +  S           ++  
Sbjct: 472 LEVNAIQTRFGFSTEDIHTLRVWVRNAGVRSGVEIEQPHWQNYNSWENGLNRLLLGSSLK 531

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                  +      +  L   ++  +   +       N       ++ W +         
Sbjct: 532 EEQGIWENTLAFGDSYGLNAELVGRLASFIEALLAWVNFLQTPQPLAAWQQAIKNL---- 587

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                    N         L+++  +IIE  S    +    I+++  L + +  +   + 
Sbjct: 588 --TADLYQENAENAASILLLNNVNDQIIEQISATHFSDDLQIEVLALLFEQQLSQHSQQL 645

Query: 625 S---STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
           +     +     L  R + F  + L G+NE  +P+    N F           +      
Sbjct: 646 NFLVGRVNFATLLPMRAIPFKVICLLGMNEADFPRQQQINSFDLMQYAPKKGDRAKRDDD 705

Query: 682 GQAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                  E     + +   +     +++    + S  + +LL           K   Q  
Sbjct: 706 RY--LFLEALLSAQQMFYISYIGQSQKDGKEMLPSILVSQLLDAMNEALTPECK---QQL 760

Query: 739 LDWTRKLDYTT-------------------------KQPHYKRPKPFPPLEAQPRTYSFS 773
            D    L                                  +     P       +    
Sbjct: 761 SDEVEVLVRKQPLSVFSKKNFTHPRDHAYNAEWIIKPTVAVQDFLSEPLTNESVASLELD 820

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
           E+   + +P   +  ++L +     +    D ++   +       ++ + +  N  +   
Sbjct: 821 ELISFVQNPIRFFFLKVLGIS-FNTYDDTIDESEIFEMSGLDNYRILNELLTINLAQQQR 879

Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLF-------HKISHSFLEHEEKIQSSIEKIFVNIP 886
                 +   +      +   I                  +L  E +I S   ++ +   
Sbjct: 880 FF---AEEQLKGNLPASYFAQIATQDLIGKITEMQAALSHYLASESRILSVNREVELE-R 935

Query: 887 AKMAIES 893
             + +  
Sbjct: 936 QTLTLNG 942


>gi|302558544|ref|ZP_07310886.1| UvrD/Rep family helicase [Streptomyces griseoflavus Tu4000]
 gi|302476162|gb|EFL39255.1| UvrD/Rep family helicase [Streptomyces griseoflavus Tu4000]
          Length = 1072

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 80/797 (10%), Positives = 186/797 (23%), Gaps = 88/797 (11%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90
               +    V     T +A  EL     +   +     P         G+ V      F 
Sbjct: 57  GTGQVAPEQVLGLTFTNKAAGELAERVRKALVRAGVTDPDAIDPDNPPGEPVISTYHAFA 116

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL  + L   +    RLL  A    +    L +         P   P    +   L  
Sbjct: 117 GRLLTDHGLRVGLEPTSRLLADATRYQLAARVLREA--------PGLYPALTRSFPDLVG 168

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYW 195
           +L  +   +     + EDL     E                       A   L      +
Sbjct: 169 DLLTLDAELAEHLVRPEDLRDHDAELLRTLENTRLTNADLRKVPEAAAARRELADLVLRY 228

Query: 196 TERLVELNASSPVGY----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
                E +                  E   +++     +++     +  A   L++ +  
Sbjct: 229 RAAKRERDLLDFGDQIALSARLAALPEVGRVLRDEFRVVLLDEYQDTSVAQRVLLAGLFG 288

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
              G  V    D       W   +  + +    +  ++     +   L            
Sbjct: 289 GGTGHPVTAVGDPCQAIYGWRGASVANLDDFPEHFAHADGRTATRQSL------------ 336

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                S        ++  +    +     +  +   +     +    V         EE 
Sbjct: 337 -----SENRRSGGRLLDLANGLAEPLRAMHAGVEALRPAPGAERDGTVRCALLATHAEEI 391

Query: 372 ISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
             IA ++   ++  K     A++         ++  L    + +++     L      + 
Sbjct: 392 DWIADSIAHLVNTGKAPGEIAVLCRTAGDFAEIQGALVARDVPVEVVGLSGLLHLPEIAD 451

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           L ++   +       ++  L+  P  + G  +  L   +    +   R + +      L 
Sbjct: 452 LVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARRLVTHARVDGDDDPDRRLA 511

Query: 490 SLVLDRIATQK---NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
             V      +     +      ++ +     +  +            L T   +   +  
Sbjct: 512 EAVEGVDPAEVISLADALDTFLETPMDGRRDDDGLPFSPDARVRFARLATELRDLRRSLA 571

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
           +  +    ++       V L            E       + +            A    
Sbjct: 572 DPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDVAASFAAGDGEATLLAFLGF 631

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN---------------- 650
                  +           +T+ +L   +S+ L +D + + GL                 
Sbjct: 632 LRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGTFPSGQGREKWTAQ 691

Query: 651 --------EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY--- 699
                    G        + + SR +++        ++  +    +      R L+    
Sbjct: 692 GKVLPHALRGDADTLPDVDSWDSRGLKAFHEAMKEHQHTEELRLGYVTFTRPRSLLLGSG 751

Query: 700 TRSLRENNIPTIASRWLQRLLVL-----GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                    P   S +L  L        G  + + +     +      R  D        
Sbjct: 752 HWWGPSQKKPRGPSAFLHALYRHCAAGYGEIEAWADEPAEDEENPALHRATDDQVWPLAL 811

Query: 755 KRPKPFPPLEAQPRTYS 771
                     A     +
Sbjct: 812 DDAALARRRAAADTVLA 828


>gi|254286014|ref|ZP_04960975.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae AM-19226]
 gi|150423924|gb|EDN15864.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae AM-19226]
          Length = 1148

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 114/985 (11%), Positives = 244/985 (24%), Gaps = 133/985 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W       +    Y      
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179

Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             +           +   A  +         + I G +   P     +  +  H +  ++
Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297
           L     H    I +                                     + Q SL   
Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVENYLQESLHLS 299

Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342
                 LL  +     D   L   +++                 I    L          
Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIDIQRDSLLHHIQADILHLQEHQDDAK 359

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
             + +  P+I      + +    +   E   +   L    + +     +   ++  D N 
Sbjct: 360 FAISSHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         I   IS       +   +    LL           +  L++ P
Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479

Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496
             +A+F   E+  + AK  +E   +R   NS    +                + L+   +
Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +     +         + + ++  L   +   +  L   ++    T        W   
Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L  +    +L +L  ++ + G     +      ++T  + G 
Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  ++
Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731
             +          + +    L  +   R   +N   + S  +  LL     +     D  
Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772

Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762
            +           L                     +     R +             +  
Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819
             + P      E+++    P   + +R LK+     +   + D      G   + +  EL
Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           ++  +          +          +   P        L      +    E+      +
Sbjct: 893 VENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952

Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900
            +       + +    +   + L G
Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|75674249|ref|YP_316670.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-255]
 gi|74419119|gb|ABA03318.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter
            winogradskyi Nb-255]
          Length = 1202

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 87/849 (10%), Positives = 201/849 (23%), Gaps = 109/849 (12%)

Query: 194  YWTERLVELNASSPVGYQIALMRAEAE-------HLMKGTKGPIIIAGSTGSIPATARLM 246
            ++     E             +R   +       + +      ++I  +  + P    ++
Sbjct: 360  HYRREKHERGLLDYDDLIDKTLRMLEQTSPGWVHYKLDRGVDHVLIDEAQDTSPKQWDIV 419

Query: 247  STV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------- 289
              +         A       V    D       +     +  +                 
Sbjct: 420  ERIIADFTTGEGAREGVRRTVFAVGDEKQSIFSFQGAAPREFDERRRKLERKFTDAKLPF 479

Query: 290  --THPQYSLAKLLDFLDIKREDVK--RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                  YS       L+      +   +    + +    +  S +   P   D+ + +  
Sbjct: 480  RKEDFIYSFRSGKTILESVDHVFRDPAIYASIHAVGAHPVHESLADAAPGIVDLWSLEER 539

Query: 346  ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--------------NKKKSAL 391
            + +           A+     E + A  I   ++  + +                    L
Sbjct: 540  DKREEMEGWRAPFDAVTATSPEVKLARRIRDEIKSLIAQGAMTGHLGNRRPLGYGDILVL 599

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +    N    V   L + GI +  +  + L+  +    L +L +A+    D +A+A  +K
Sbjct: 600  VRRRGNAFDAVIQALKQSGIPVAGADRLKLTEHIAIIDLMNLADALLLPRDDLALAVALK 659

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             PL      + +    +    L                +L     A  K        +  
Sbjct: 660  SPLFGLDDDDLFKLAWQRKGTLR--------------DALAGHATADDKFRDAFESLKRC 705

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
             S   ++        +L            +     N ++ ++ +L +TC +         
Sbjct: 706  ESRAARDTPFAFFAWLLG-EEAGRRRILRRLGHEANDALDEFLELALTCERKAPASLQGF 764

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
            +   W       +        +    +  +  + ++     +   +  P   +  +L  +
Sbjct: 765  MA--WLRAADTEVKRDMEISRDEVRVMTVHGAKGLEASVVFLADTSTSPADTERLSLIRM 822

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM- 690
            G   +        I  G      P        ++   + +            A       
Sbjct: 823  GRGNAPAGVAGVTIWAGRKAEDPPCVAQARAAMTAETEHEYRRLLYVAMTRAADRLIVGG 882

Query: 691  ---ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG----------------------- 724
               AN      ++           +   +Q +    G                       
Sbjct: 883  CKPANRKDVREFSWYHLIEKGLANSGLAMQEIETASGKVKRFTRPDHDDPGSNRSRIMNV 942

Query: 725  --------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
                          L       L+           P        P         +     
Sbjct: 943  IDSNILERDAGGKPLHTFPHPALEEAEPDAAGPAPPASPGATRIPLPPWLHLAAAPEAPA 1002

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
            +    P         +        +      RGTL H ++  L +   ++        + 
Sbjct: 1003 RRSLYPSDADEAAHQRAPAGAIPDQRHRARLRGTLVHRLLQSLPEVPRDRRREAALSYLG 1062

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI-ESIG 895
            +      + E+      ++      + +  F E          +  V I  ++       
Sbjct: 1063 RNASGWGKTEHDALAARVVAVLDDARFAPVFAE--------GSRAEVAIVGRLTTRRGDP 1114

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
            + ++G  DR+ +   G V + DYKT   P            QL+L  A L          
Sbjct: 1115 LPVSGQIDRLVVTPHG-VLVVDYKTSPAPASLADVPPAYIRQLALYRAMLAGL----YPE 1169

Query: 955  RKVANLFYI 963
              V      
Sbjct: 1170 LPVNAALLW 1178


>gi|261211433|ref|ZP_05925721.1| exodeoxyribonuclease V gamma chain [Vibrio sp. RC341]
 gi|260839388|gb|EEX66014.1| exodeoxyribonuclease V gamma chain [Vibrio sp. RC341]
          Length = 1148

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 114/985 (11%), Positives = 245/985 (24%), Gaps = 133/985 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKIALARELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDREEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W       +    Y      
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179

Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             +           +   A  +         + I G +   P     +  +  H +  ++
Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239

Query: 259 LPGLDCHIPTAIWNTITEKSTNIT-------------------SSNTTYSTHPQYSLA-- 297
           L     H    I +                                    ++ Q SL   
Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQVTIGSEVSPLKGDVESYLQESLHLS 299

Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342
                 LL  +     D   L   +++                 I    L          
Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                  P+I +    + +    +   E   +   L    + +     +   ++  D N 
Sbjct: 360 FASSGHKPSIAEQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         I   IS       +   +    LL           +  L++ P
Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479

Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496
             +A+F   E+  + AK  +E   +R   NS    +                + L+   +
Sbjct: 480 AIMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +     +         + + ++  L   +   +  L   ++    T        W   
Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L  +    +L +L  ++ + G     +      ++T  + G 
Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  ++
Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731
             +          + +    L  +   R   +N   + S  +  LL     +     D  
Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772

Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762
            +         + L                     +     R +             +  
Sbjct: 773 LESDDSGRRLVKHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819
             + P      E+++    P   + +R LK+     +   + D      G   + +  EL
Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           ++  +          +          +   P        L      +    E+      +
Sbjct: 893 VENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952

Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900
            +       + +    +   + L G
Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|56414943|ref|YP_152018.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363871|ref|YP_002143508.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129200|gb|AAV78706.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095348|emb|CAR60906.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 1123

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 102/941 (10%), Positives = 238/941 (25%), Gaps = 113/941 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGIAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+    +K   ++        L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQLLDKDEFVLLH----HYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   + +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLKALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A   F   +M          +    
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAPLGF--DLMSQKTMRGDRSRRDDD 712

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGG---------------- 724
                E     +  L  +   R   +N     S  +Q L+   G                
Sbjct: 713 RYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDES 772

Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRTY 770
                    R    + +  +     +Q  Y R                  P     P T 
Sbjct: 773 EARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPETL 832

Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827
           +   +++    P   + +  L+++F     + PD       G   + +  +L+   + ++
Sbjct: 833 TLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEED 892

Query: 828 TPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
             E      +   +  +    E          + L  ++  
Sbjct: 893 DTERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|329946360|ref|ZP_08293927.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527336|gb|EGF54334.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 1146

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 124/1098 (11%), Positives = 251/1098 (22%), Gaps = 184/1098 (16%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS- 104
             V     T++A  EL                 +         +   D   S ++  P+  
Sbjct: 69   QVLGLTFTRKATAELDQRVASRLTG--LGAAGMLPATAPDGAETGGDTADSTDVGEPMIA 126

Query: 105  -----------------NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                              +     L      W+     +     P    SL  + + A+ 
Sbjct: 127  TYNSFAGSLVRDHGLRIGVDPDSTLITQARSWQIVTSLLEARTLPLPSESLIHNASAALV 186

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIAS 192
            L+  L+  +  ++       DL                          W    D +    
Sbjct: 187  LSDALSQNLLSLDEAATDLADLTEQFTALAAIKGCKTLVGKAPAVMSEWEALLDVVAEL- 245

Query: 193  KYWTERLVELNASSPVGYQIALMRA--EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
            + +  R   L+    +    A+  +  EA   ++     +++     +  A  RL+S + 
Sbjct: 246  QGYKRRHGLLDFGDQIALACAIAESVPEAAAQVRSQYPAVLLDEFQDTSVAQVRLLSALF 305

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT---TYSTHPQYSLAKLLDFLDIKR 307
                   V    D H     W   +  + +           S  P    A +LD     R
Sbjct: 306  ADSG---VTAVGDPHQAIYGWRGASAGALDTFHQRFNPTGSSGTPPADAAPVLDLSTSWR 362

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
             D   L   +         + +   P             +    ++     V      + 
Sbjct: 363  NDSTILEVANAVSEPLRSGVVQDGDPMGEHIAVAPLRARSVSFGLE--PGAVHGAFLQDP 420

Query: 368  REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
             EEA ++A  L         + A++   R     +  EL   G+   I     +      
Sbjct: 421  VEEARTVAAFLAERWSP-GAEMAVLCRTRTQMEPIAAELEAAGLPYTIVGLGGMLYVPEV 479

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            + + +LL A         +  L+           + L+     +       ++N  +   
Sbjct: 480  ADVRALLTAASDPERGDRVVRLLTG-FGIGAGDLRALATLAREVINPTPEPSRNGTEGRA 538

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
             +      + ++  +T +   +  + +   ++   L       +                
Sbjct: 539  SQDEADSPLLSEALDTLLRWDEEGVDQPVPDVVHDLTAAGR-AVALRTARAIRCVREAIA 597

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            L + D   L    L        R    +          +  +   +T +      +EW+D
Sbjct: 598  LPLPDLVTLAEQVLDLDIEIAARVGDPMGHRALDSFQETALTFAADTDAATLTGFLEWLD 657

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP------------ 655
                  D  T          + +L    ++ L +D + + G++E V+P            
Sbjct: 658  AAEEQEDAMTAPEVDTSPGAVQLLTVHAAKGLEWDVVAVPGMDEQVFPSYTSSVKEDLRV 717

Query: 656  --------------------------------KNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                                                  P L+  M +       +    +
Sbjct: 718  VETGWMGSTSTFPFPLRADADDLPPFTVGDLDPAVTDKPLLTETMNAYKEALGRQSLREE 777

Query: 684  AAHDFEMANGTRHLIY---TRSLRENNIPTIASRWLQRLLVLG-----GTDFFDNLKKRG 735
                +      RH +    +   +  + P   SR+L  L         G  + D    R 
Sbjct: 778  RRLAYVAFTRARHELLLTGSHLSKTASKPRRPSRFLTELRRRDLLATYGDGWVDFDDSRP 837

Query: 736  QCYLDWTRKLDYTTKQPHYKRP-------------------------------------- 757
                  T+   +       + P                                      
Sbjct: 838  NPLTALTQVGTWPLDADEPEAPGTGTPGTRGAHGDEETLTDRAGGLRRARWAAAAQVAAA 897

Query: 758  -KPFPPLEAQPRTYSFSEIKQLINDP--YAVYARRILKLDFIPHFKKDPD--------RT 806
                 P E      S        +D           L L                     
Sbjct: 898  MSDTRPTEPASAEPSAPAQVAQTSDETLQRWQLEAGLLLAERARATTATSTVRLPEHLAA 957

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHL------MKQIIDSH---------FEKENLPPH 851
             R                    PE              +              +  +P +
Sbjct: 958  TRLDDLRADRQRFALDLRRPLPPEPRAAGRLGTVFHDAVAQRLSARGTLFSLGEAGVPDN 1017

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS- 910
            +D   R    +   +       +             ++ + +    L    D +      
Sbjct: 1018 LDPQDRARVERWLDT--AENLSLLDDYVLAETETDREITVGAT--TLRCRMDAVFRRVDR 1073

Query: 911  GFVDITDYKTGDNPKKETAQKLIDPQLSLE--AAALKAGSFSQIDCRKVANLFYIRLKQK 968
                I D+KTG              QLS+   A A   G              Y+ +   
Sbjct: 1074 AGWLIVDWKTGRRQVPVD-------QLSVYVHAWAASQGV-----PVGSVRAVYVYVDYP 1121

Query: 969  FKIDCITNDKKKYSADEL 986
                    D    S D++
Sbjct: 1122 GGRVDELTDADLLSLDQI 1139


>gi|300858460|ref|YP_003783443.1| hypothetical protein cpfrc_01043 [Corynebacterium pseudotuberculosis
            FRC41]
 gi|300685914|gb|ADK28836.1| hypothetical protein cpfrc_01043 [Corynebacterium pseudotuberculosis
            FRC41]
 gi|302206173|gb|ADL10515.1| RecB family exonuclease [Corynebacterium pseudotuberculosis C231]
 gi|302330730|gb|ADL20924.1| RecB family exonuclease [Corynebacterium pseudotuberculosis 1002]
 gi|308276413|gb|ADO26312.1| RecB family exonuclease [Corynebacterium pseudotuberculosis I19]
          Length = 303

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 87/268 (32%), Gaps = 27/268 (10%)

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
             + +P      +    S S        P     R I KL              +GTL H 
Sbjct: 28   TQSQPPKEAAPKRLALSPSRANDYQQCPLLYRFRAIDKLPEPKTV-----AQVKGTLVHA 82

Query: 815  IITELIKKRINKNT-PEINHLMKQII-----DSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            ++ E+ +    +   P     +K        +    +E +P      +      +   + 
Sbjct: 83   VLEEMHEWPREQRLYPAAVKRLKPQWAKMCSEDSELEELVPEDKTYDFLVECRSLLRGY- 141

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928
              E +     +     +     +   G+ + GF DR+D+  +G V + DYKTG  P    
Sbjct: 142  -FEMENPQGFDAHECEMYISAELP-NGVPVRGFIDRVDIAPTGEVRVVDYKTGKKPIPRF 199

Query: 929  AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
            +Q+ I  Q+   A       + +I  +    L Y+++     +     +          E
Sbjct: 200  SQQAI-FQMRFYALVYWR-LYGKIPDQ--LRLMYLKVTDSMFLMPSKEE---------LE 246

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSE 1016
               ++L E+   + +         + S+
Sbjct: 247  YFERDLGELWQKILDDAAAGSFRPKTSK 274


>gi|318060452|ref|ZP_07979175.1| ATP-dependent DNA helicase [Streptomyces sp. SA3_actG]
          Length = 1171

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/604 (10%), Positives = 142/604 (23%), Gaps = 49/604 (8%)

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
              F   LL  + L   +    RLL  A    +    L +         P   P      
Sbjct: 111 YHSFAGRLLDDHGLRLGLEPGSRLLADASRFQLAARVLREA--------PGPYPALTRGF 162

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKI 190
             L  +L  +   +         L     +                       A   L  
Sbjct: 163 SDLVSDLLSLDGELSEHLVDPAALSRYDEDLLRTLAEARLSNDQLRKVPEAAAARLALTE 222

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARL 245
            +  +       +            R   EH       +     +++     +  A   L
Sbjct: 223 LTGRYRAAKRSRDLIDFGDQLALSARLAREHPEVGEALRAQYRVVLLDEYQDTSVAQRVL 282

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           +S +     G  V    D       W   +  + +    +  +          L      
Sbjct: 283 LSALFGGGTGHPVTAVGDPCQAIYGWRGASVANLDDFPRHFPHPDGTPARRQSL------ 336

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                      S        +++ +          +  +     P  +     V      
Sbjct: 337 -----------SENRRSGGRLLALANDLAAPLRALHDGVEALHAPAGKAADGFVRCALLP 385

Query: 366 NEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLST 423
              EE   +A ++   +         A++        R++  L    I +++     L  
Sbjct: 386 THAEEIDWLADSIAHYVRTGTSPGEIAVLCRTAGDFARIQAALVAREIPVEVVGLSGLLH 445

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
               + L ++   +       ++  L+  P  + G  +  L   +  L   A   +    
Sbjct: 446 LPEIADLRAVCEVLQDPGANASLVRLLTGPRWRIGARDLALLGRRARLL--AGGRSGEDD 503

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
               L + V      +  +             D E  +         +  L         
Sbjct: 504 PDRRLAAAVEGVDPAEIVSLADAVDTFVEGGPDAEDGLPFSAGARARLARLGRELRELRR 563

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
              +  +    ++      +V L            E       + +    T       A 
Sbjct: 564 ALADPLMDVLHRVLAVTGLDVELSASPNALAARRRETLGQFLDIAASFAATEPAASLLAF 623

Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                     +           +T+ +L   +++ L +D + + GL    +P +  +  F
Sbjct: 624 LGYLRTAEQYEKGLDNALPGGENTVKVLTAHKAKGLEWDVVAVPGLVVKQFPSDRGREKF 683

Query: 664 LSRV 667
            +R 
Sbjct: 684 TARA 687



 Score = 58.4 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 80/776 (10%), Positives = 175/776 (22%), Gaps = 50/776 (6%)

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
               G    I  A     IP     +S + + P  A +    +         ++    T  
Sbjct: 416  RTAGDFARIQAALVAREIPVEVVGLSGLLHLPEIADLRAVCEVLQDPGANASLVRLLTGP 475

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                           A+LL       +D  R    + E    + ++S +       +   
Sbjct: 476  RWRIGARDLALLGRRARLLAGGRSGEDDPDRRLAAAVEGVDPAEIVSLADAVDTFVEGGP 535

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
                        +               E   +  AL   L +   +   +T        
Sbjct: 536  DAEDGLPFSAGARA-------RLARLGRELRELRRALADPLMDVLHRVLAVTGLDVELSA 588

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                L               ++   +    SLL  +  L         + + L       
Sbjct: 589  SPNALAARRRETLGQFLDIAASFAATEPAASLLAFLGYLRTAEQYEKGLDNALPGGENTV 648

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
            K L+  K            +   +  L          ++  T            D     
Sbjct: 649  KVLTAHKAKGLEW------DVVAVPGLVVKQFPSDRGREKFTARASVLPHPLRGDAATLP 702

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             + +   + +           +T              + L         +          
Sbjct: 703  DVAEWTAKGLKAFQDGMRAHQATEELRLGYVTFTRPRSLLLGSGHWWGPEQKRPRGPSAF 762

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
             T                A      D    L   + +   +             +  +  
Sbjct: 763  LTALHDHCVRGHGEIERWAEPPGPEDENPALRQSDPLPWPLPLDPGAHARRREAAARVEH 822

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-----ANGTRH 696
               +L         +   ++P+         +        G  A D          G   
Sbjct: 823  HLGLLQSRRATATTEEPPEDPYDPEWPPEPEDEPEPRPEPGDEAPDPYEEEPDPYEGGPD 882

Query: 697  LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
                        P          +        D   +  +    W R LD    +   +R
Sbjct: 883  AYSGGPDPYEGGPDPYGSDAAPRVPAPAAHGDDLTPEESRLLDSWDRDLDALEGE--LRR 940

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                      P + + +++ +L  DP       + +    P  +       RG  FH  +
Sbjct: 941  AAASVREVPLPPSLTATQVLRLAEDPDG-----LARDLARPLPQAPKPAARRGARFHAWL 995

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
               +     +    +            E  +              ++  +F       + 
Sbjct: 996  ERRLTAGHEQPHLPLADEGDTEAREDAEISDDLD---------LEELKEAFERTAYAHRP 1046

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRI---DLLKSGFVDITDYKTGDNPKKETAQKLI 933
            +     V +P ++++      + G  D +   D       +I D+KTG         +  
Sbjct: 1047 AHR---VEVPFQLSLAGR--VVRGRIDAVYASDEDGRRRYEIVDWKTGR-----DRTRAD 1096

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
              QL++   A        ID  ++A   ++ ++    +       +       +E+
Sbjct: 1097 PLQLAVYRLAWAE--RHGIDPEEIA-ATFVFVRTGEAVRPGRLPGRAELERLFAEE 1149


>gi|197116745|ref|YP_002137172.1| exodeoxyribonuclease V subunit gamma [Geobacter bemidjiensis Bem]
 gi|197086105|gb|ACH37376.1| exodeoxyribonuclease V, gamma subunit [Geobacter bemidjiensis Bem]
          Length = 1074

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 84/877 (9%), Positives = 207/877 (23%), Gaps = 84/877 (9%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           L++          P          + V  K   + L  E     G  +         GD 
Sbjct: 14  LVDELERVVRAPRPAPCTPFDKELVVVQNKGMQRWLSMELATRIGVWAN--------GDF 65

Query: 85  VEEKFTADLLLSYNLN--PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
           +      + + +Y L   P  + +     +   IL    +             L+     
Sbjct: 66  LFPNKFVEEVFAYVLPESPADAPLFAPEVMTWRILELLQQSAGRAGFEEVAGYLADDGDG 125

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
              + LA+ ++D  D         ++L   +  +    W           + W       
Sbjct: 126 LKRMQLARRISDTFDRYTIYR--PKELLRWEQGEE-EHWQA---------QLWRALNDRA 173

Query: 203 NASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                  ++  L+             +  I + G     P    +++ VA H    + L 
Sbjct: 174 GQ----KHRARLLHDFLASRKNDRSWRRRISVIGIPSLPPFHLDVLAKVAEHAEVNLFLL 229

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
                    I +    +   +           +     L  +  + R+  K + +   + 
Sbjct: 230 NPCRQYWGEIVS--ERELARLEKHGQGEEQWYETGNPLLASWGKLGRDFFKAIIDDCGDH 287

Query: 321 YGRSMVISK---SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
                         L    +D+      E     +Q     + +    +   E   +   
Sbjct: 288 EREDSFYELPQGVLLHEVQADIVELRGAEAGPRQVQAGDLSLKIHSCHSPMREVEVLYDT 347

Query: 378 LRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTTLHS 427
           L    D +     +   ++T D          +       R  I   I+     +    +
Sbjct: 348 LLSLFDADPLLSPRDVLVMTPDIEAYAPYISAVFDNPEEDRKRIPYSIADRSLKNEGEAA 407

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGF----PEKYLSRAKNALELVALRGNKNSY 483
             L ++L           +  +++ P     F     +    R       +    + +  
Sbjct: 408 RALVAILGLCGGRYGVATVLDILESPPVARRFGLSGDDLENVRDWLRGANIRWGIDASQR 467

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH-------ILQCITPLVT 536
               +     +  A   +   + +  +          +   D          + +T    
Sbjct: 468 AEHGVPPFSENSWAAGLDRLLLGYAMNGDGRSFYNGILPYDDMEGGVALSFGRFLTFCEK 527

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                 +       S+W       L +  L +               ++    +      
Sbjct: 528 LFAQTGALSRPRVPSEWVPALRQILDDFILPDQEGEREFL---LLIEMAKKLGEFPAAAG 584

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             +   IE +        G + +     +  +     L  R + F  + L G+NEG +P+
Sbjct: 585 FEEEIGIEVVRYWVEQQLGASKRDLGFLTGNVTFCAMLPMRSIPFPVVALLGMNEGEFPR 644

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASR 714
                 F     +      +             + +  + L  +   +   +N     S 
Sbjct: 645 RNPPQGFDLMTREPRSGDSSPRDEDRYL-FLEALLSARKRLHISYVGQSIKDNAELPPSV 703

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            +  LL      F                       +P  +  +      +       S 
Sbjct: 704 LVSELLDYLERAFV------------------TPEGKPAAEVARHPLQPFSLQYFNRDSA 745

Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRT--DRGTLFHNIITELIKKRINKNTPEIN 832
           +             ++        F   P     + GT+    + + +     +      
Sbjct: 746 LFSYSQQNCEGAKAKLSSPTPREPFLDAPLPAWEEEGTVTLKTLIDFLCNPAKELLRRRL 805

Query: 833 HLMKQIIDSHFEKENLPP----HIDIIWRHLFHKISH 865
            +  +      E+             + + +   +  
Sbjct: 806 GIRIEQGVEPLEESEPFALDTLAKYQLEQEMVTALLR 842


>gi|260752918|ref|YP_003225811.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552281|gb|ACV75227.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 768

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 96/760 (12%), Positives = 211/760 (27%), Gaps = 123/760 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E++    ++ G ++  +P + +   +  +                 
Sbjct: 68  SQILAVTFTNKAAREMQMRVGDLLGSQAENMPWLGTFHSIAAKM---------------- 111

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    L  +      I      W AK LA IID  +    
Sbjct: 112 -LRRHAELVGLKSDFIILDTDDQIRLLKQLIQGQGIDEKQ--WPAKQLAGIIDRWKNRGL 168

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             + +   + + +      A          + +RL+ LNA       + ++    +H   
Sbjct: 169 TPDKIAGKEEDSFADGQGAAL------YLAYQKRLLSLNACDFGDLLLHMLVILTQHREV 222

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I++     +  A    +  +A        +   D       W      + 
Sbjct: 223 LDSYHDRFRYIMVDEYQDTNQAQYLWLRLLAQKNRNICCV--GDDDQSIYSWRGAEVANI 280

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      P   + +L        + +     +      R                
Sbjct: 281 LRFEEDF-----PGAKIIRLEHNYRSTPQILGAASGLITHNNAR---------------- 319

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAI---SIAIALRMSLDENKKKSALITADR 396
                L   +   +     V +I   +  EEA    +    LR +     K  A++   +
Sbjct: 320 -----LGKTLWTERDQGEKVKIIGVWDGAEEARQLVADVQNLRRANIPLNK-MAILIRAQ 373

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R  +       +   I  G             + L  I +  D +A   +V  P   
Sbjct: 374 FQSREFEDIFIAKNLPYRIIGGFRFYERAEIRDALAYLRVIAQPTDDLAFERIVNVPKRG 433

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G            L            D + L       ++                   
Sbjct: 434 IGKKAMEKLYQAAFL------------DRIPLAEAAEKLVSE------------------ 463

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                 L   I Q +  L+   +    +   +S +D T+  +        DE      L 
Sbjct: 464 ----KTLGSKITQSLGQLMNDFSEWRKSLSVVSHADVTRKML--------DESGYKAMLR 511

Query: 577 FEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
              + ++       + E    ++   +   +++ ++ ++D             + ++   
Sbjct: 512 AVNDVQSAGR-LENLTELARAMEEYDDLGSFLEHVSLVMD----HENDPIDDKITLMTMH 566

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L FD + L G  EGV+P   + +         +  L + E+    A      A   
Sbjct: 567 AAKGLEFDHVFLPGWEEGVFPSQRSLD---------EGGLNSLEEERRLAYVGITRAKKC 617

Query: 695 RHLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             + +  + R       +  SR++  L      +    L+K+   + D   +        
Sbjct: 618 CTIFHAANRRVYGQWIASTPSRFISELPDDHIEE-KSLLRKKAPIWRDIWAEDRSKNPAY 676

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
           +  +    PP +   R  +  +  Q      +      LK
Sbjct: 677 NSAKEAITPPWQLASRRGAGWQRAQKAAASPSPAVSHPLK 716


>gi|117924280|ref|YP_864897.1| DNA helicase/exodeoxyribonuclease V, subunit A [Magnetococcus sp.
            MC-1]
 gi|117608036|gb|ABK43491.1| DNA helicase/exodeoxyribonuclease V, subunit A [Magnetococcus sp.
            MC-1]
          Length = 1155

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 63/718 (8%), Positives = 166/718 (23%), Gaps = 56/718 (7%)

Query: 228  GPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
              +++     +     +L+  +    +  +G  +    D       +             
Sbjct: 420  RHLLVDEFQDTSQLQIKLLEGLTAGWSAEDGRTLFLVGDPMQSIYRFRKAEVALFAQVRE 479

Query: 285  NT--TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                + S  P            +     +    +  E   R   +              +
Sbjct: 480  QGLGSISVEPLQLEVNFRSNAGVVGWVNEAFEQLFPEQEDR--DLGAVPYHHSVPFHGAS 537

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARR 401
              +  +   +Q                EA  +   +  +  +N +   A++   R     
Sbjct: 538  HGVAVQWHPVQGGLDG--------ALREAQQMVRIIEQTRQQNPQGSLAVLVRARPHLAA 589

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            +   L   GI         L        L SL  A+ +  D +A   L++ P       +
Sbjct: 590  LVPLLKAAGIPFQAVEIDALERRPVVQDLWSLSRALHQPADRIAWLALLRAPWCGLSPAQ 649

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                           +  ++   +  L+ +   R+               L++  +    
Sbjct: 650  LVPLAEGQGSGTPLWQALQDKRRVEQLEPMAQGRLNRLVEVLQG-----ALAQRGRVGLR 704

Query: 522  LLVDHILQCITPLVTYKTNK--NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
              ++     +    T    +         ++ +  +     +    L    +       E
Sbjct: 705  QWIEGCWHALGGPATAGGAEGMQDASRYFALLEQLESRGEVVDWPALGGRLQRLYGAGAE 764

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
             G  +  L             +  + ++  T ++ G     K+ +   L +         
Sbjct: 765  AGPGVVQLM----------TIHKSKGLEFDTVILPGLNRPGKVSERPLLEMWERSHIH-- 812

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
             +  +    L   +      + P  + + +     +  E         +      +  ++
Sbjct: 813  EWGGVERQLLVAPIPSAADEEAPLFAFLRRVQGEQERHEMR----RLLYVATTRAKQHLH 868

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
              +L                  L     +  L                  + P    P+ 
Sbjct: 869  LLALLSEQDKDPK-------ANLPLGMLWPTLSTMDPAEPGAPPPPPQAAQAPRPLWPQT 921

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
               L    +         ++ D            +   +          G + H  +  +
Sbjct: 922  LQRLADGWQPPPPPPAVAVLRDEGMAEPE----GEPPRYDWAGEPARMAGIVTHEWLQIM 977

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ---S 876
             ++ +    P     ++  I S      L  +          +     L           
Sbjct: 978  AQQGVASWRPARVEALQGAIASRLVALGLAKNRIEETAQRVVQALKQALTTLLGRWILHD 1037

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
              ++          +      +    DR  + + G   I DYKT      +     +D
Sbjct: 1038 GHQEAACERELTGVLGGRLTRI--VIDRTFVDEEGVRWIIDYKT-SAHSGQDVDGFLD 1092


>gi|332530634|ref|ZP_08406567.1| uvrd/rep helicase [Hylemonella gracilis ATCC 19624]
 gi|332039917|gb|EGI76310.1| uvrd/rep helicase [Hylemonella gracilis ATCC 19624]
          Length = 1133

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 81/798 (10%), Positives = 195/798 (24%), Gaps = 66/798 (8%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPII 231
                     +I  + +     E         + A +            +  +      ++
Sbjct: 349  HQQRMIRLARILLEEYAALKRERGWVDMSDVERAALHLLERSELSAWLQQRLDARTRHLL 408

Query: 232  IAGSTGSIPATARLMSTVANHPNGA-----------IVLPGLDCHIPTAIWNTITEKSTN 280
            I     + P   + +    +   G             +    D       +     +   
Sbjct: 409  IDEFQDTNPLQWQALHAWLSSYAGVGGGASGAGGAPRLFIVGDPKQSIYRFRRAEPQIFR 468

Query: 281  ITSS-------NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
               S       +     H + +   +L  ++    + +  G         +         
Sbjct: 469  AAQSFVQALGGDLLACDHTRRNAPAVLARVNAVLGEAQSQGEYEGFRAHTTESTQAGQAW 528

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADN-EREEAISIAIALRMSLDE--NKKKSA 390
                  R     +      +       L   D     E    A  +   ++     K+  
Sbjct: 529  VLPPIERQARDKKEAATVWRDSLLAPRLTPEDTLRARECRQAARWIAQRIEAGLPPKEVM 588

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            ++   R+    ++ EL   G+         L        LT+LL+ +      +++A ++
Sbjct: 589  VLARKRDRLVAMQAELLALGVPATQPEQADLGAAPEVQDLTALLDVLVSPGHDLSLARVL 648

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
            + PL                LE+ A +          L++      A        P  Q 
Sbjct: 649  RSPLLGPHLG----LDDTALLEIAARQRGGKQAWFDLLQTTPPAAWAHADLREVGPRLQR 704

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                         +D I      +  Y             +    L    LQ        
Sbjct: 705  WQQWVRTLPPHDALDAIYADGDVVARYAAAAPPHLRARVQTHLQALLEAALQFDGGRYAT 764

Query: 571  KLPNLWFEEEGKT-LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                +     G+    +           +  +  + ++  T LI      P+  ++ ++ 
Sbjct: 765  PYALVRALRAGRLPAPAQPMPEGGAVRLLTVHGAKGLEAETVLILDTDTPPQRAQTMSVL 824

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
            +           D               + K   L    +     + A +   +    + 
Sbjct: 825  L-----------DWPGEASAPRSFVFLASEKEERLPPSAREAHARERAARGREELNMLYV 873

Query: 690  MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
                 R  +   +++ +   T    W QRLL      +     +     +     +   +
Sbjct: 874  ALTRARAQLVFSAVQPHQQNTEGKSWWQRLLHECQP-WEPTPPQSPADGVARFEGMGRVS 932

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                 +   P     A     + S I   +          +L        ++D      G
Sbjct: 933  DMDGREAGAPTQHEPAVAAPAASSAIVLRVLPDIRYQPVPVLAPS----SEEDALAARIG 988

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            +  H ++          +  +        ++    ++ L P        +  +I H    
Sbjct: 989  SAMHRLLEWTALDTAEFSPAQ--------LERAGAEQGLTPAQARQAADMARRIVHGAGA 1040

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
                  + +      +P  +  ++         DR+   + G   + DYK+    +    
Sbjct: 1041 WVW-RGADVAWWSNEVPVTIEGQAR------RIDRLVRHRDGTWWVLDYKSASYAQAAEV 1093

Query: 930  QKLIDP-QLSLEAAALKA 946
             +     QL     A++A
Sbjct: 1094 TRAQMLAQLRAYGDAVRA 1111


>gi|212635557|ref|YP_002312082.1| exodeoxyribonuclease V subunit RecC [Shewanella piezotolerans WP3]
 gi|212557041|gb|ACJ29495.1| Exodeoxyribonuclease V, RecC subunit [Shewanella piezotolerans WP3]
          Length = 1224

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 95/836 (11%), Positives = 219/836 (26%), Gaps = 91/836 (10%)

Query: 49  IYVPTKRAIQELRSEFIEITGKKSTI---LPII-------KSLGDVVEEKFTADLLLSYN 98
           I V +      LR E        + +   LP           L DV +E       +++ 
Sbjct: 36  ILVQSPGMSTWLRLEIARQNNIAAALEFPLPSSFIWQLCHTLLEDVPKENAFTKAAITWK 95

Query: 99  LNPPVSNIQRLLELARLILIWRNKLPDIIK----------DLYPESPLSLPISPANAIWL 148
           L   + ++    + A L     N      +          D       S P SP     L
Sbjct: 96  LMELLPSLIDQDDFAPLANYLNNGNQGHGENDLQSQYLEIDTSETISASHPQSPLKLYQL 155

Query: 149 AKNLADIIDIIETEEKKWEDLHALKN------EKYGMWWLLAADFLKIASKYWTERLVEL 202
              +ADI D        W                           L  A   +    +  
Sbjct: 156 CGQIADIFDQYLVYRPDWIAAWEANEPTLPPKGDKLAPAQAWQPILWRALIQFNANTLHK 215

Query: 203 NASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
           +         AL     +    M      + + G +   P T  ++  +A   +  ++  
Sbjct: 216 SQYHRANLHQALFDKLDDPNTSMTSLPRRLFVFGISSMAPQTLDVLHHLAKRIDVIMLSL 275

Query: 261 GLDCHIPTAIWNTITEKSTNI----------TSSNTTYSTHPQYSL-----AKLLDFLDI 305
               H    I +        +             +     +P  +       +LLD +  
Sbjct: 276 SPCQHYWGDIVDPRLRARMALQYANKQKLEVEWEDKLEVGNPLLANNGKMGRELLDLMLE 335

Query: 306 KREDVKRLGNVSNEMYG--------RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
             E+         +  G        +  ++  S          +  +  +    +Q+   
Sbjct: 336 LPEEHTAFNLDCYQDPGIDCMLHGVQHDILQLSTRGQCLGPDASLYLTVDGRRMLQQDDH 395

Query: 358 DVALIEADNEREEAISIAIALRMSLDEN---------KKKSALITADRNLARRVKLEL-- 406
            + +    +   E  ++   L   L +           K   ++  D          +  
Sbjct: 396 SITIRSCHSPLREVETLHDHLLEMLSKQTDSKGQPLAPKDIVIMMPDVAAYAPYIDAVFS 455

Query: 407 ---TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPE 461
                  I   I+    +  +   +    LLN          I  +++ P  L +F   +
Sbjct: 456 AKQGSHYIPYAIADRGAVQESPLIASFLHLLNINQSRFGLTDIIGILEVPSVLRRFELDD 515

Query: 462 KYLSRAKNALELVALRGNKNSYDI--MDLKSLVLDRIATQKNNT------HVPHWQSRLS 513
             L+  K  LE   +R  ++        L +   +  A                   + +
Sbjct: 516 DSLTILKRWLEQAGVRWGRDGASRAEHQLPAFEQNAWALGIKRLILGYSFADNSPLYQQT 575

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                +       + + +  +        +   N S+++  +     L      +  +  
Sbjct: 576 LAVNGIEGQTAQALGKLLDFIEALDDVHAALAQNCSLTERIEQLEQLLAAFYSVDDDEQV 635

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            L  +E    + +L  ++ E+G           +     +    V  +     ++     
Sbjct: 636 QL--QEIRDAIVTLAEELTESGHTTPLPIEVLQNWFNSRLSESRVGQRYLAG-SINFCTL 692

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
           +  R + F  + L G+N+GV+P+      F             + +   +      + + 
Sbjct: 693 MPMRSIPFKIVCLLGMNDGVYPRVQHPVGFDLVAQMDPRKGDRSRRLDDRYLFLEAILSA 752

Query: 694 TRHLIYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            + L  +   +   ++   I S  +  L           ++     YL     L+     
Sbjct: 753 RQQLYISYIGNSERDDSERIPSMLVSEL-----------VEYCQLAYLPAKLALESKASA 801

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
            +Y + +    ++   +  S   I +    P+         +      ++      
Sbjct: 802 DNYSKQEAAVFVDKIEQAISTQLICKQPLQPFDERLYHSAHISDSFPLQQSYSAQW 857


>gi|291544540|emb|CBL17649.1| recombination helicase AddA, Firmicutes type [Ruminococcus sp. 18P13]
          Length = 1187

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 89/885 (10%), Positives = 206/885 (23%), Gaps = 113/885 (12%)

Query: 148  LAKNLAD----IIDIIETEEKKWEDLHALKNEKYGMWWLL---AADFLKIASKYWTERLV 200
            LAK L D    I+  ++TE      L   + E       L      FL+       E   
Sbjct: 291  LAKALRDDGKKIMKDLQTEAVS---LLCHRQEDLDAHCRLIPVLHAFLQQLDDRLWEMKC 347

Query: 201  ELNASSPVGYQIALMRAE-------------AEHLMKGTKGPIIIAGSTGSIPATARLMS 247
            + NA      +   +                    +      I+I     +      +  
Sbjct: 348  DKNAIGFTDAEQLALSLLGTCQADGTIQQTALAKELSEFYQIIMIDEFQDTNNKQDLIFK 407

Query: 248  TVAN----HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             +++      NG  +    D       +     ++   T       T          D  
Sbjct: 408  LISHKGSAVANGDNLFMVGDVKQAIYRFRLANPRNFIRTMQAFKPYTGK-------DDGE 460

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
            +      +   +    +   + + S    P        ++   ++     +   +  +  
Sbjct: 461  NACILLNRNFRSSPEVIAMVNFLFSTLMTPQVGEVAYTSEEALHQGAAFAETPRNTEIAL 520

Query: 364  ADNERE----EAISIAIALRMSLDE--------------NKKKSALITADRNLARRVKLE 405
             ++  +    EA  IA  +   L E                +   ++  ++         
Sbjct: 521  LEDGEQDTNPEAAYIAKRIARMLREGAPVSDGANHTRPCTPRDFCILMRNKAKGSVYVQA 580

Query: 406  LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
            L   G+                ++L +LL  I       A+A ++  P+ +F   E    
Sbjct: 581  LAEQGVAAYSEEAAAYLKAREITLLLNLLRIIDNPPQDTAMAAVLLSPMFRFDMDELTQL 640

Query: 466  RAKN-ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
            R     + L A                +L     +K        Q+      ++    L+
Sbjct: 641  RLLAPKVSLYAAICRGIGETGAADAQPLLTGAMYEKTKGFYNALQAFRMYAMQDTPERLI 700

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
              I +    L   +   +      ++                     L  +         
Sbjct: 701  RRIYESTDFLSVMQRYSDGAKKQANLRLMLTYARNYETASGGGLSGFLHYIAQVSARGKD 760

Query: 585  SSLFSKIIETGSCIKAN------AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                + +  +   +          +E+  +            + ++++  F+        
Sbjct: 761  FQPGTAVSGSEDVVAIKTIHKSKGLEFPFVFLA-ESETDFNHQDDRAAFQFLQEYGFGFR 819

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-------------NLKTAEKYIGQAA 685
            L   T+            +  +  +        L              L+  +    QA 
Sbjct: 820  LQDPTVYTRYKTLPYAAISMQRESYAKSEELRLLYVALTRAKDKLFLPLRLNDARKKQAF 879

Query: 686  HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
                    +  +  + +   N +       L              +             L
Sbjct: 880  RLGAAIAASGRVTPSIAASANCMADWLWMALLTAENAAPLREACQMPPCPLQPAVPMEIL 939

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI--------------- 790
                     ++  P P    +P     + ++      Y      I               
Sbjct: 940  HPEDSSDATEQDTPTPAAYPKPDPAMVTALRMQFAAVYDDRLMGIPSKTSVSALSKDEDA 999

Query: 791  ----LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
                L+       +      ++GT  H  +         ++       + +      +  
Sbjct: 1000 VNLALRRPRFMAEETALTGAEKGTALHAFLQYADFAVAAQDPDAERQRLTE------DGH 1053

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--------- 897
                  D +  +        F     +     E ++      + I  + +          
Sbjct: 1054 LTRRQADSLDLNRIRAF---FASPLYERIRQAEHVWRERKFLVRISDLQLLDQPQYTGTN 1110

Query: 898  --LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
              L+G  D +     G + + DYKT      E   +    QL L 
Sbjct: 1111 AMLSGIMDLVFEEPDG-LVLVDYKTDYVQGGEMLTERYQRQLLLY 1154


>gi|241761119|ref|ZP_04759208.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374738|gb|EER64199.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 768

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 96/760 (12%), Positives = 211/760 (27%), Gaps = 123/760 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E++    ++ G ++  +P + +   +  +                 
Sbjct: 68  SQILAVTFTNKAAREMQMRVGDLLGSQAENMPWLGTFHSIAAKM---------------- 111

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    L  +      I      W AK LA IID  +    
Sbjct: 112 -LRRHAELVGLKSDFIILDTDDQIRLLKQLIQGQGIDEKQ--WPAKQLAGIIDRWKNRGL 168

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             + +   + + +      A          + +RL+ LNA       + ++    +H   
Sbjct: 169 TPDKIAGKEEDSFADGQGAAL------YLAYQKRLLSLNACDFGDLLLHMLVILTQHREV 222

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I++     +  A    +  +A        +   D       W      + 
Sbjct: 223 LDSYHDRFRYIMVDEYQDTNQAQYLWLRLLAQKNRNICCV--GDDDQSIYSWRGAEVANI 280

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      P   + +L        + +     +      R                
Sbjct: 281 LRFEEDF-----PGAKIIRLEHNYRSTPQILGAASGLITHNNAR---------------- 319

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAI---SIAIALRMSLDENKKKSALITADR 396
                L   +   +     V +I   +  EEA    +    LR +     K  A++   +
Sbjct: 320 -----LGKTLWTERDQGEKVKIIGVWDGAEEARQLVADVQNLRRANIPLNK-MAILIRAQ 373

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R  +       +   I  G             + L  I +  D +A   +V  P   
Sbjct: 374 FQSREFEDIFIAKNLPYRIIGGFRFYERAEIRDALAYLRVIAQPTDDLAFERIVNVPKRG 433

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G            L            D + L       ++                   
Sbjct: 434 IGKKAMEKLYQAAFL------------DRIPLAEAAEKLVSE------------------ 463

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                 L   I Q +  L+   +    +   +S +D T+  +        DE      L 
Sbjct: 464 ----KTLGSKITQSLGQLMNDFSEWRKSLSVVSHADVTRKML--------DESGYKAMLR 511

Query: 577 FEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
              + ++       + E    ++   +   +++ ++ ++D             + ++   
Sbjct: 512 AVNDVQSAGR-LENLTELARAMEEYDDLGSFLEHVSLVMD----HENDPIDDKITLMTMH 566

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L FD + L G  EGV+P   + +         +  L + E+    A      A   
Sbjct: 567 AAKGLEFDHVFLPGWEEGVFPSQRSLD---------EGGLNSLEEERRLAYVGITRAKKC 617

Query: 695 RHLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             + +  + R       +  SR++  L      +    L+K+   + D   +        
Sbjct: 618 CTIFHAANRRVYGQWIASTPSRFISELPDDHIDE-KSLLRKKAPIWRDIWAEDRSKNPAY 676

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
           +  +    PP +   R  +  +  Q      +      LK
Sbjct: 677 NSAKEAITPPWQLASRRGAGWQRAQKAAASPSPAVSHPLK 716


>gi|227495237|ref|ZP_03925553.1| RecB family exonuclease [Actinomyces coleocanis DSM 15436]
 gi|226831689|gb|EEH64072.1| RecB family exonuclease [Actinomyces coleocanis DSM 15436]
          Length = 281

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 74/240 (30%), Gaps = 21/240 (8%)

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
              + +  S +                +      P+       T RGTL H ++  +   
Sbjct: 5   QATRRKALSATSTSTWKQCQLKFRLIYLDGFREPPNP-----VTTRGTLVHAVLEHIYDY 59

Query: 823 RINKNTPEINHLMKQII-------DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
           +      E    +           D  F+           W    + +  S+ + E   +
Sbjct: 60  QAGMRNLETAKSLTAAQYQEMFAKDPEFQAMFTEESALNQWLAEVNSLVESYFQMENPQR 119

Query: 876 SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935
             +E     +       S GI + GF DRID   +G + I DYKTG +P+ +  +  +  
Sbjct: 120 --LEPYARELLVDAE-TSSGIAIRGFIDRIDKAPNGAIRIVDYKTGKSPRPQYMEDKLH- 175

Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
           Q+   +  ++            A    + L     +      ++  + +    +  + + 
Sbjct: 176 QMRFYSLLMRQAG-----RGVPARTQLVFLGDGKTLTFDPQPEQVDAFEHYLTQIWQQIE 230


>gi|220935292|ref|YP_002514191.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996602|gb|ACL73204.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1147

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 86/828 (10%), Positives = 198/828 (23%), Gaps = 67/828 (8%)

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM--- 215
             E      + L    + +    W  A        +   E L  L+ +        L+   
Sbjct: 327  CERWLAALDGLARQHSLRLNGAWFSAGLRYLEHYQALKEELRTLDFTDLEWRAYQLLNHG 386

Query: 216  --RAEAEHLMKGTKGPIIIAGSTGSIPATARLMS------TVANHPNGAIVLPGLDCHIP 267
                  ++ +      ++I     + P   RL+              G  V    D    
Sbjct: 387  DHALWVQYRLDSRIEHLLIDEFQDTNPTQWRLILPLLEELAAHGERQGRSVFLVGDTKQS 446

Query: 268  TAIWNTITEKSTNITSSNTTYS--------THPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
               +     +   I +                   S   ++DF++        L      
Sbjct: 447  IYSFRRADPRLQEIAARWIEERLNGRPETLDWSWRSSPAVMDFVNRVFTACPALRAALPG 506

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE-----REEAISI 374
             +     +   +   +   +   D    +     +   D       +        E   I
Sbjct: 507  FHPHDTHLKDLWGRVEVWPLIQADQETEEDTPASQGLRDPLTTPRPDPGESLHAREGARI 566

Query: 375  AIALRMSLD-------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            A  +R  +D              +     ++  +R     ++  L   GI    +A   L
Sbjct: 567  AARIREMVDGGQVVGRGASARPMHFGDITILVRNRTHVGAIEDALRDAGIPYLSAARGEL 626

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
               L    L +LL  +   +D +A+A +++ PL      E                    
Sbjct: 627  LDHLEVRDLEALLRVLITPHDDLALAQVLRSPLFDVTHRELERLA-----------DAGP 675

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                  L+ L  D                  +         L+D I      L  Y+   
Sbjct: 676  GPWHERLERLAPDLPPGSALKRAADKLTRWRAWSGALPVHDLLDRIFLDGNVLARYQAGS 735

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
             +      ++   +     L+         +  L      +  S             +  
Sbjct: 736  RADRVPTVMASLIRFLELALEVDSGRYPSLVHFLARLRGLRDRSDAAPDTPPVRGAEQRV 795

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
             I  I     L                      + +          G       +   ++
Sbjct: 796  RIMTIHASKGLEAPVIFLADAAAVPR-------DHKTYEPLVQWPAGEPRPRLMQLLPRS 848

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
              +  + +  L      +   +A   +      R ++   +             ++  + 
Sbjct: 849  DDVDSLTRQALAHHQTAREREEANLLYVALTRARQVLIVSASARGKGDGGWYARIREAIA 908

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                    +    G+   D +   +  T     ++    PP    P   +   ++    +
Sbjct: 909  PEAVSEELDTGVPGRFAEDGSWVHEAGTPPVAAEQAVATPPAAQVPEGLNR-RLECAAPE 967

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
                 +R             D D   RG   H ++  L          + +  + + + +
Sbjct: 968  REIAPSRAAAGYAEGEREDGDEDARLRGVGIHRLLEWLAGGMR-----DSDAALIRRLAA 1022

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
                +   P +   W      +            +     +  +P +         + G 
Sbjct: 1023 ELGLDPGHPDLGE-WLGEARAVLAEPGLAAVFAPAPDCVDYCEVPLQYTAADGR-TVYGI 1080

Query: 902  ADRIDLLKSGFVDITDYKTGDNPK---KETAQKLIDPQLSLEAAALKA 946
             DR+  +    + + DYKT             ++    ++L A  ++ 
Sbjct: 1081 IDRL-RVGRERILLVDYKTHRVADEAAARQVAEVYAAPMALYAEGVRR 1127


>gi|221194763|ref|ZP_03567820.1| hypothetical protein ATORI0001_0314 [Atopobium rimae ATCC 49626]
 gi|221185667|gb|EEE18057.1| hypothetical protein ATORI0001_0314 [Atopobium rimae ATCC 49626]
          Length = 1037

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 107/962 (11%), Positives = 224/962 (23%), Gaps = 206/962 (21%)

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            I    + E + +            L+    +      +  I+++G      +  + +  +
Sbjct: 145  IVLDRYLELIHKRGFLEKDESYTLLISLLPQSYC--EQQSIVVSGVENLTFSEKQFLCNL 202

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
            + + +  +VL         A    +                     L++L        + 
Sbjct: 203  SQNTDVQLVLSTPQNEAGNANRELL-------------------ARLSRLSHK-----DV 238

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            +               ++   FLP  T+    +                V L+       
Sbjct: 239  LFVNDVQEPHDAEVEALLHTIFLPQQTTLPLKSQ-------------GKVTLLSPAGILA 285

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSS 428
            E   I   ++  + +  K   +    +N A R     L   GI         +S +  + 
Sbjct: 286  EPALIIEHIQGLIAQGVKSFGIYAPQQNEAWRQLAPRLAAHGIPAKTVMRQAVSDSSCAR 345

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
                L+ A+ K                          +    +   A +           
Sbjct: 346  AFLGLVRAVCK-------------------------LKNLCEVWPDASQAELGDMSWWPP 380

Query: 489  KSLVLDRIA------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
            + +V    +      T+K       W+         L   L            T ++  N
Sbjct: 381  REIVDFLFSPLSFVSTEKAWDIDKMWRKNRILTPDHLLRFLRQASATSKECAATVESILN 440

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                                           +L                 +  S  K   
Sbjct: 441  GRIEKALHRLLIACDEHREDFDDEAYLLISNSLSAIMTVAQALHKLEAKADIASEQKFYE 500

Query: 603  IEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLN-FDTLILGGLNEGVWPKNTAK 660
            +      +  ++    +    K+  ++ IL     R  N FD +I  G++       T  
Sbjct: 501  VACQKSFSLCLNNGAAETVGSKAPVSVEILSDKSMREPNTFDAVICLGMDSVNTSLPTKD 560

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPTIASRWLQ 717
                S ++   L        + +          +     +    +  E++  T AS  L+
Sbjct: 561  --KASDLLAEKLEGVRPIAPLAEGRRRLYRMLASARTYVSLACVAHSEDSNKTFASVVLK 618

Query: 718  RL-----LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ----------------PHYKR 756
             L        G  +     +  G+   +         K                 P    
Sbjct: 619  ELLSCYETAEGEFNLPQLTRGEGRLSANLLLGGKTPAKVDSLPLRPTGSISETLKPFVIL 678

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
            P      + Q +  S S+I+  +  PY  + +R LKL             ++GT  H ++
Sbjct: 679  PSYRGVEQPQIQELSASQIESYLECPYKWFVQRRLKL---DRVDAGFSGLEKGTFIHRVL 735

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFE-------------------------------- 844
                 + + +     + L  + +                                     
Sbjct: 736  ELTHMQLLQEALGTSDALSDEYVWQAVATSLPDSRISQDTLAHVRYVLSTQFDALAKEQF 795

Query: 845  -----------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
                       +                +     L+ E     + E  F  +        
Sbjct: 796  VAPQKTQRRTQRLVPHTVAQHQQMQKLREDLFGLLDFETDKFVTFEPRFFELKFGADGGF 855

Query: 894  I----GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ------------- 936
                 G+  TG  DRID+   G   I DYK     K   A      Q             
Sbjct: 856  PATYAGVAFTGSIDRIDVNARGEAIIIDYK----HKAAQALSSYAVQKSVVEQNPEEDMP 911

Query: 937  ----LS------LEAAALKAGSFSQIDCRKVANLFYIR---------------------- 964
                L       + A  ++   + +          Y+                       
Sbjct: 912  SHVELPRHVQAIIYAQVVRT--YLKSRNLTSVGAMYLGTHQNYALYGAAPELYINKIFGL 969

Query: 965  ---LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
                K    +          + +E  +     + + V  + NG+    +H  L +++   
Sbjct: 970  SDEQKPSKGMLSCVAGDTVGAFNEYLDAWEDKIKQAVERMLNGDI--HAH-ALDKEACAY 1026

Query: 1022 SE 1023
              
Sbjct: 1027 CP 1028


>gi|205353936|ref|YP_002227737.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205273717|emb|CAR38710.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326629050|gb|EGE35393.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 1123

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 103/942 (10%), Positives = 240/942 (25%), Gaps = 115/942 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      +P  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDEPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLLHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   R +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+   
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVS 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L+       +              
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L  + +    + L+     +        + +W  +    L +
Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +             +   ++ ++ +              D + + +D E +  +  
Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+  A    L   + S   ++        
Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711

Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724
             + F  A     + L  +   R   +N     S  +Q L+   G               
Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771

Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769
                     R    + +  +     +Q  Y R                  P     P T
Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826
            +   +++    P   + +  L+++F     + PD       G   + +  +L+   + +
Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891

Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865
           +  E      +   +  +    E          + L  ++  
Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933


>gi|294053734|ref|YP_003547392.1| Exodeoxyribonuclease V [Coraliomargarita akajimensis DSM 45221]
 gi|293613067|gb|ADE53222.1| Exodeoxyribonuclease V [Coraliomargarita akajimensis DSM 45221]
          Length = 1136

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 101/897 (11%), Positives = 230/897 (25%), Gaps = 58/897 (6%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L  TLV N          L +  + V      + LR    +  G  + +   +      +
Sbjct: 14  LAETLVRNLASSERVTDRLEATAVIVQNAGLGRWLRLWHAKRCGISAAV--TMPFAQSFI 71

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
            ++     L  ++    +S      ++  L+     +       L     L         
Sbjct: 72  AKELER--LGLFDRWQELSPTLLRWQIFDLLQSREFEHWSDAGPLSAYLGLEHRAVERRC 129

Query: 146 IWLAKNLADIIDIIETEEKKW-EDLHALKNEKYG-MWWLLAADFLKIASKYWTERLVELN 203
             LA  LA++ D       +W E   A +        W   A   +   +       +L+
Sbjct: 130 WALAGRLANLFDRYAVHRPEWIEAWVASEQGDVSLPHWNWQAQLFRSVLERLGLSSADLS 189

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                    A + A+     +     + + G     PA  R    ++      +      
Sbjct: 190 RRLIGRAVQAYLVADEPGQSRDD-SAVHVFGIGSFPPAFLRFFQRLSVSREVYLYHLVPS 248

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                 +                  +   Q+    LL          + L    +   G 
Sbjct: 249 EAYLGELPKNYRATLLTELEGGELGADADQWLQNSLLIANGQAAARFQSLLLSMDLPTGE 308

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
             V+ +     D   ++N   L             ++L +  +   E   +   L    +
Sbjct: 309 LPVVEELAARSDLQHLQNAVRLNEPYCEFN-ADGSLSLHQCHSRIREVQVLQQQLLAQFE 367

Query: 384 ENKK----KSALITADRN-----------LARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            +         ++  + +           +  RV        +   I+            
Sbjct: 368 ADPDLRPEDILVLVPEISDYTDAIQSVFGMGTRVHAGRDPIKLPYCIADQKNSGDESCWR 427

Query: 429 ILTSLLNAIFKLNDFMAIATLVKH-PLAKFGFPEKYLSRAKNAL------ELVALRGNKN 481
             T+LL  +     F  +  L+   P+ +    ++ L +   +L           + ++ 
Sbjct: 428 FFTALLRLMKGRQLFSEVIALLDFDPVCRRLGLDRELLKELASLLQSVGVRWGINQASRV 487

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
           S  + + ++   +    +  +  +    S         +  L + I      L       
Sbjct: 488 SKGLPEYEAYSWEHGLQRLYDGLIYGEWSPKDCASGLNSAHLQESIGSLTQFLRPVFDLA 547

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                  S  DW +L ++ L+             W     + L+    ++    S +   
Sbjct: 548 QRDSEQHSFKDWAELLLSVLRQTL--GEGHESGEWM----RLLAVEIGELQLHASDVTIR 601

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
              +  ++          P       +       +R +    + + GL+EG +P+     
Sbjct: 602 FDTFCTMLEEGDLSTA-GPSGLLRRGITFCRLQPARHIPAKVVCILGLDEGSYPRQERGL 660

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEM----------------ANGTRHLIYTRSLRE 705
            F    +Q       A+  +      +                   N  + L  +   + 
Sbjct: 661 EFDLIDLQRRHAKALAKTSLRYQEIHYLGDVHIRDADRQLFLDCILNARQRLYLSYVGQS 720

Query: 706 N--NIPTIASRWLQRLLVLGGT-DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
           +  N     S  L  L           + K+  +  L   R       Q         P 
Sbjct: 721 DQNNEDLPPSLLLNELKQFLERVPDPADEKQVAERRLGLARACVRHPLQDWSIHNFEHPT 780

Query: 763 LEAQPRTYSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
           ++            Q    D  +V   R L+   +   + +      G      + +   
Sbjct: 781 MQLGEPPVPVHFNSQYARIDRQSVSVARFLEPVAVALPEHEHADQLTGEQLLRFLKDPAD 840

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
             + +        +   +++H ++E L       W           L  ++   S  
Sbjct: 841 YYLKQQLHVNLEQL-SWLETHEDQEALELDALGHWELRARVFDAWCLAKQQGHVSER 896


>gi|19552714|ref|NP_600716.1| endonuclease [Corynebacterium glutamicum ATCC 13032]
 gi|62390382|ref|YP_225784.1| endonuclease [Corynebacterium glutamicum ATCC 13032]
 gi|21324268|dbj|BAB98893.1| RecB family exonuclease [Corynebacterium glutamicum ATCC 13032]
 gi|41325719|emb|CAF21508.1| RecB family exonuclease [Corynebacterium glutamicum ATCC 13032]
          Length = 278

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 16/233 (6%)

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
            +P   S S        P     R I +L              +GTL H ++  + K   
Sbjct: 12  PRPLALSPSRAGDYQQCPLLYRFRAIDRLPEPKTV-----AQVKGTLVHAVLEYMHKLPR 66

Query: 825 NKNT-PEINHLMKQIIDSHFEKEN-LPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEK 880
            +   P +   +K       E++  L   +     + F   S + L    E +     + 
Sbjct: 67  EEREYPAMVKQLKPTWAQMCEEDAELKELVPEDELYDFLVDSRTLLRGYFEMENPQGFDA 126

Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
               +     +   G+ + GF DR+D   +G V + DYKTG  PK + +Q+    Q+   
Sbjct: 127 TECEMYVDTVLP-NGVPVRGFIDRVDTAPTGQVRVIDYKTGKKPKPQWSQQA-QFQMLFY 184

Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK--KYSADELSEKSL 991
           A       F++I  +    L Y+++     ++      +  +    +L  K  
Sbjct: 185 ALVYWR-MFNEIPAQ--LRLMYLKVNDSMFLNPSREQLEFFERDLGDLWAKIE 234


>gi|146307013|ref|YP_001187478.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Pseudomonas
           mendocina ymp]
 gi|145575214|gb|ABP84746.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Pseudomonas
           mendocina ymp]
          Length = 1158

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 111/955 (11%), Positives = 239/955 (25%), Gaps = 89/955 (9%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L    V+  R  PL P  L +  + V +    Q L+    E  G        +      +
Sbjct: 43  LRALAVQWMRRYPLWP--LENEVLLVQSNGIAQWLKLALAERDGCGIAAALDVDLPARFL 100

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
            + +    +L  +  P  S + +     RL+ +    L +          L+        
Sbjct: 101 WQAYRN--VLGKDAIPQESPLDKAPLTWRLMRLLPGLLAEEAFAPLRRF-LADDQDLRKR 157

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKY---GMWWLLAADFLKIASKYWTERLVEL 202
             LA+ LAD+ D  +     W    A   ++               +     W   L ++
Sbjct: 158 HQLAERLADLFDQYQVYRADWLADWAAGQDRLRTSRGGERPLEGDSRWQPALWRALLADV 217

Query: 203 NASSPVGYQI----ALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
                   +       +   AE           I + G +         ++ +A      
Sbjct: 218 GEQHLAESRAGVHPRFVARLAELDAPPAGLPRRITVFGISSLPAQVLEALAAMARFSQVM 277

Query: 257 IVLPGLDCHIPTAI-----------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           + +     H    I                +                Q+    L  +   
Sbjct: 278 LYVHNPCQHHWGDIVEDKDLLRHEYRRQQRKGRPGAQIGLFEQEDMHQHGQPLLAAWGKQ 337

Query: 306 KREDVKRLGNVSNEMYGRSMVIS------------KSFLPPDTSDMRNTDILENKIPNIQ 353
            R+ +  L         R                    L  D  D+R      +  P + 
Sbjct: 338 GRDYINLLDQYDEPQRYREQFDRIDLFSPASENSLLGQLQNDILDLRPLAETRSTWPPVD 397

Query: 354 KCFS-DVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL-- 406
                 +    A + + E   +   L  S  E      +   ++  D N        +  
Sbjct: 398 PVKDHSLRFHIAHSAQREVEVLHDQLLASFSEDATLRPRDIIVMVPDVNAYAPHIQAVFG 457

Query: 407 -----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP- 460
                    I   ++             L  LL           I  L+     +  F  
Sbjct: 458 QFASDDPRFIPFTLADQGLRGKEPMVIALEHLLRLPDSRFSVSEILDLLDVAALRQRFAI 517

Query: 461 -EKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRL 512
            E+ L   +  LE   +R   +S     L       ++     +        V    +  
Sbjct: 518 TEEQLPTLRRWLEGAGVRWGLDSSQRQSLGLGENLEQNTWRFGLRRMLLGYAVGTGDAFA 577

Query: 513 SEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
             E  +    L    I      L +   +        +   W +   + L +    +  +
Sbjct: 578 GIEPYDEIGGLDAALIGPVTRLLESLDRHLQQLREPATPVRWGERLRSLLDDFFQPQSDR 637

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              L   +    L +  +                 +     +D   +  +    + +   
Sbjct: 638 EEVL-TTQLLDALDAWLALCEAATLGEALTLPVVREAWLDGLDQGRLSQRFLAGA-VNFC 695

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
             +  R + F  + L G+N+G +P++ A   F           ++  +       +  +A
Sbjct: 696 TLMPMRAIPFRQVCLLGMNDGDYPRSQAPLDFDLMAGDYRPGDRSRREDDRYLLLEALLA 755

Query: 692 NGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF--------------------- 728
                L  +   R   +N     S  + +L     + +                      
Sbjct: 756 AR-DRLYISWVGRSIRDNSERPPSVLVGQLRDHLASAWTLAGGGDLLHGLTTEHPLQPFS 814

Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                       +  +      Q          P   +    +   ++  + DP   +  
Sbjct: 815 RRYFDGEGQLFSYAHEWAALHGQVSTHESAAPLPAWEEGLQLTPELLQSFLRDPVKCFFT 874

Query: 789 RILKLDFIPHFKKDPDRTDRGT--LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
           R LK+      +   D        L    + E + K       + +  ++   D      
Sbjct: 875 RRLKVYLDEEEQAQLDSEPFALDGLQRYQLQEALLKAAIAGEGDSDDALRAAADRLQRSG 934

Query: 847 NLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
            LP       +R+   +   + ++  + +        +  P ++   + G+ L G
Sbjct: 935 VLPLAGFGEQYRNALLEPLPAQVQRYQGLCLCW-PSLLESPQRLTFAAAGVQLDG 988


>gi|333024559|ref|ZP_08452623.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071]
 gi|332744411|gb|EGJ74852.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071]
          Length = 1164

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 63/604 (10%), Positives = 141/604 (23%), Gaps = 49/604 (8%)

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
              F   LL  + L   +    RLL  A    +    L +         P   P      
Sbjct: 111 YHSFAGRLLDDHGLRLGLEPGSRLLADASRFQLAARVLREA--------PGPYPALTRGF 162

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKI 190
             L  +L  +   +         L     +                       A   L  
Sbjct: 163 SDLVSDLLSLDGELSEHLVDPAALSRYDEDLLRTLAEARLSNDQLRKVPEAAAARLALTE 222

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARL 245
            +  +       +            R   EH       +     +++     +  A   L
Sbjct: 223 LTGRYRAAKRSRDLIDFGDQLALSARLAREHPEVGEALRAQYRVVLLDEYQDTSVAQRVL 282

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           +S +     G  V    D       W   +  + +    +  +          L      
Sbjct: 283 LSALFGGGTGHPVTAVGDPCQAIYGWRGASVANLDDFPRHFPHPDGTPARRQSL------ 336

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                      S        +++ +          +  +     P  +     V      
Sbjct: 337 -----------SENRRSGGRLLALANDLAAPLRALHDGVEALHAPAGKAADGFVRCALLP 385

Query: 366 NEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLST 423
              EE   +A ++   +         A++        R++  L    I +++     L  
Sbjct: 386 THAEEIDWLADSIAHYVRTGTSPGEIAVLCRTAGDFARIQAALVAREIPVEVVGLSGLLH 445

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
               + L ++   +       ++  L+  P  + G  +  L   +  L   A   +    
Sbjct: 446 LPEIADLRAVCEVLQDPGANSSLVRLLTGPRWRIGARDLALLGRRARLL--AGGRSGEDD 503

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
               L + V      +  +             D    +         +  L         
Sbjct: 504 PDRRLAAAVEGVDPAEIVSLADAVDTFVEGGPDAADGLPFSAGARARLARLGRELRELRR 563

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
              +  +    ++      +V L            E       + +    T       A 
Sbjct: 564 ALADPLMDVLHRVLAVTGLDVELSASPNALAARRRETLGQFLDIAASFAATEPAASLLAF 623

Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                     +           +T+ +L   +++ L +D + + GL    +P +  +  F
Sbjct: 624 LGYLRTAEQYEKGLDNALPGGENTVKVLTAHKAKGLEWDVVAVPGLVAKQFPSDRGREKF 683

Query: 664 LSRV 667
            +R 
Sbjct: 684 TARA 687



 Score = 58.0 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 78/771 (10%), Positives = 176/771 (22%), Gaps = 47/771 (6%)

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
               G    I  A     IP     +S + + P  A +    +        +++    T  
Sbjct: 416  RTAGDFARIQAALVAREIPVEVVGLSGLLHLPEIADLRAVCEVLQDPGANSSLVRLLTGP 475

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                           A+LL       +D  R    + E    + ++S +       +   
Sbjct: 476  RWRIGARDLALLGRRARLLAGGRSGEDDPDRRLAAAVEGVDPAEIVSLADAVDTFVEGGP 535

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
                        +               E   +  AL   L +   +   +T        
Sbjct: 536  DAADGLPFSAGARA-------RLARLGRELRELRRALADPLMDVLHRVLAVTGLDVELSA 588

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                L               ++   +    SLL  +  L         + + L       
Sbjct: 589  SPNALAARRRETLGQFLDIAASFAATEPAASLLAFLGYLRTAEQYEKGLDNALPGGENTV 648

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
            K L+  K            +   +  L +        ++  T            D     
Sbjct: 649  KVLTAHKAKGLEW------DVVAVPGLVAKQFPSDRGREKFTARASVLPHPLRGDAATLP 702

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             + +   + +           +T              + L         +          
Sbjct: 703  DVPEWTAKGLKAFQDGMRVHQATEELRLGYVTFTRPRSLLLGSGHWWGPEQKRPRGPSAF 762

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
             T                A      D    L   + +   +             +  +  
Sbjct: 763  LTALHDHCVRGHGEIERWAEPPGPEDENPALRQSDPLPWPLPLDPGAHARRREAAARVEH 822

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
               +L         +   ++P+         +        G  A D              
Sbjct: 823  HLGLLQSRRATATTEEPPEDPYDPEWPPEPEDEPEPRPEPGDEAPDPYE--EEPDPYEGG 880

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
                   P          +        D   +  +    W R LD    +   +R     
Sbjct: 881  PDAYEGGPDPYGSDAPPRVPAPAAHGDDLTPEESRLLDSWDRDLDALEGE--LRRAAASV 938

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                 P + + +++ +L  DP       + +    P  +       RG  FH  +   + 
Sbjct: 939  REVPLPPSLTATQVLRLAEDPDG-----LARDLARPLPQAPKPAARRGARFHAWLERRLT 993

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                +    +            E  +              ++  +F       + +    
Sbjct: 994  AGHEQPHLPLADEGDTEAREDAEISDDLD---------LEELKEAFERTAYAHRPAHR-- 1042

Query: 882  FVNIPAKMAIESIGIHLTGFADRI---DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
             V +P ++++      + G  D +   D       +I D+KTG +  +         QL+
Sbjct: 1043 -VEVPFQLSLAGR--VVRGRIDAVYASDEDGRRRYEIVDWKTGRDRTRADP-----LQLA 1094

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
            +   A        ID  ++A   ++ ++    +       +       + +
Sbjct: 1095 VYRLAWAE--RHGIDPEEIA-ATFVFVRAGEAVRPGRLPGRAELERLFAAE 1142


>gi|258627297|ref|ZP_05722081.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio mimicus VM603]
 gi|258580335|gb|EEW05300.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio mimicus VM603]
          Length = 1148

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 115/987 (11%), Positives = 246/987 (24%), Gaps = 137/987 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDREEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W        I  +       
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQ------PILWRELYAYTR 177

Query: 201 ELN--ASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           E               +                + I G +   P     +  +  H +  
Sbjct: 178 EQGHSIYHRANLYQRFIEQLVSGNFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA 297
           ++L     H    I +                                    ++ Q SL 
Sbjct: 238 LMLTNPCQHYWGDIRDRKYLARVAAQKRKLLQINGEQVTIGSEVSPLKGDVESYLQESLH 297

Query: 298 -------KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMR 340
                   LL  +     D   L   +++                 I    L        
Sbjct: 298 LNHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDD 357

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                    P+I      + +    +   E   +   L    + +     +   ++  D 
Sbjct: 358 AKFASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDI 417

Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           N        +         I   IS       +   +    LL           +  L++
Sbjct: 418 NAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLE 477

Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLD 494
            P  +A+F   E+  + AK  +E   +R   NS    +                + L+  
Sbjct: 478 TPAIMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGY 537

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            +  +     +         + + ++  L   +   +  L   ++    T        W 
Sbjct: 538 AMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVETLSELRSQLAQTQSMEQWRYWL 597

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
              +                L  +    +L +L  ++ + G     +      ++T  + 
Sbjct: 598 NELLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLS 652

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
           G  +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  
Sbjct: 653 GTRISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGD 711

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGT 725
           ++  +          + +    L  +   R   +N   + S  +  LL        L G 
Sbjct: 712 RSRREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGD 770

Query: 726 DFFDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKRPK------------PF 760
           +  ++     +     T +               +  +     R +             +
Sbjct: 771 EHLESDDSGRRLVKHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDY 830

Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIIT 817
               + P      E+++    P   + +R LK+     +   + D      G   + +  
Sbjct: 831 LLEVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRD 890

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
           EL++  +          +          +   P        L      +    E+     
Sbjct: 891 ELVENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLC 950

Query: 878 IEKIFVNIPAKMAI----ESIGIHLTG 900
            + +       + +    +   + L G
Sbjct: 951 HQPLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|25028185|ref|NP_738239.1| hypothetical protein CE1629 [Corynebacterium efficiens YS-314]
 gi|23493469|dbj|BAC18439.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 291

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 83/242 (34%), Gaps = 20/242 (8%)

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
            P P  + +P   S S        P     R I +L              +GTL H ++ 
Sbjct: 16  APAPDRKPRPLALSPSRAGDYQQCPLLYRLRAIDRLPEPKTV-----AQVKGTLVHAVLE 70

Query: 818 ELIKKRINKNT-PEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHE 871
           E+ +   ++   P +   +K        +     E +P      +      +   +   E
Sbjct: 71  EMHRLPRDQRDYPAMVKRLKPHWAQMCAEDPDLNELVPGDQLYDFLVECRTLLRGY--FE 128

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
            +     +   V +     +   G+ + GF DR+D   +G + + DYKTG  PK + +Q+
Sbjct: 129 MENPQGFDASDVEMYVDTVLP-NGVPVRGFIDRVDTAPTGEIRVVDYKTGKKPKPQWSQQ 187

Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK--KYSADELSEK 989
               Q+   A       F QI  +    L Y+++     +       +  +    +L  +
Sbjct: 188 A-QFQMLFYALVYWR-LFDQIPAQ--LRLMYLKVNDSMFLTPSREQLEYFERDLGDLWAR 243

Query: 990 SL 991
             
Sbjct: 244 IE 245


>gi|328884882|emb|CCA58121.1| ATP-dependent DNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 919

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 70/671 (10%), Positives = 156/671 (23%), Gaps = 61/671 (9%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV-------VEEKFT 90
               +    V     T +A  EL         +     P +    +            F 
Sbjct: 67  GTGQVAPEQVLGLTFTNKAAGELAERVRTALVRAGVTDPDVIDPDEPPGEPRISTYHAFA 126

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL  + L   +    RLL  A    +    L +         P   P    +   L  
Sbjct: 127 GRLLTDHGLRIGLEPTSRLLADATRYQLAARVLREA--------PGPYPALTRSFTTLIT 178

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKY---------------GMWWLLAADFLKIASKYW 195
           +L  +   +       E L A  +                        A   L      +
Sbjct: 179 DLLALDAELAEHLVPPEKLLAYDSALLTALAEAKLSNAELRKIPEAATARRELLDLVVRY 238

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV- 249
                  +                         +     +++     +  A   L+S + 
Sbjct: 239 RAAKRSRDLLDFGDQIARSAELATTRPEVGEILRDEFRVVLLDEYQDTSVAQRLLLSGLF 298

Query: 250 ----ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
                +   G  V    D       W   +  + +    +  ++         L      
Sbjct: 299 GQGTGDRATGHAVTAVGDPCQAIYGWRGASVANLDDFPEHFPHADGSPADRYSL------ 352

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                      S        ++  +          +  +   +     +    V +    
Sbjct: 353 -----------SENRRSGGRLLDLANGLAAPLRALHAGVEALRPAPGAERDGSVRIALLP 401

Query: 366 NEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLST 423
              EE   +A +L   +   ++    A++         + + L    + +++     L  
Sbjct: 402 THAEEIDWLADSLAHLVRTGREPGEIAVLCRTATDFPAIHVALVARDVPVEVVGLSGLIH 461

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
               + L ++   +       A+  L+  P  + G  +  L   +  L     RG  +  
Sbjct: 462 LPEIADLVAVCEVLQDPGANAALVRLLTGPRWRIGPRDLALLGRRARLL--VHRGGDDPD 519

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
               L + V      +  +          S    +  +            L         
Sbjct: 520 PEQRLAAAVEGVDPAEVVSLADALDTFLDSGAAADDGLAFSADARVRFARLAAELRALRG 579

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
           +  +  +    ++       V L            E       + +            A 
Sbjct: 580 SLADPLMDVLHRVLSATGLEVELSASPHALAARRRETLGHFLDIAAGFASLDGEASLLAF 639

Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                     +           +T+ +L   +S+ L +D + + GL  G +P   A+  +
Sbjct: 640 LGFLRTAVQFEKGLDSALPGGENTVKVLTAHKSKGLEWDVVAVPGLVAGQFPSARARESW 699

Query: 664 LSRVMQSDLNL 674
            S+       L
Sbjct: 700 TSQPQVLPHAL 710


>gi|326771896|ref|ZP_08231181.1| UvrD/REP helicase [Actinomyces viscosus C505]
 gi|326638029|gb|EGE38930.1| UvrD/REP helicase [Actinomyces viscosus C505]
          Length = 1142

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 128/1094 (11%), Positives = 252/1094 (23%), Gaps = 174/1094 (15%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEE---------------- 87
             +     T++A  EL             + +LP      D   E                
Sbjct: 69   QILGLTFTRKATAELDQRVASRLAGLSAAGLLPATAPEHDSGAEGTADATDVGEPMIATY 128

Query: 88   -KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
              F   L+  + L   V     L+  AR    W+     +     P    SL  + +  +
Sbjct: 129  NSFAGTLVRDHGLRIGVDPDSTLITQAR---SWQIVTSLLEARTLPLPNESLSHNASATL 185

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIA 191
             LA +L+  +  IE   K   DL                          W    D     
Sbjct: 186  VLADSLSQNLLTIEEAAKDLADLSEQFTALAAIKGCKTLVGKAPAVMAEWEALLD----V 241

Query: 192  SKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLM 246
                                           EA   ++     +++     +  A  RL+
Sbjct: 242  VAELHAHKRHHGLLDFGDQIALACAIAESVPEAAGQVRAQYPAVLLDEFQDTSVAQVRLL 301

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
            S +        V    D H     W   +  + +        +                 
Sbjct: 302  SALFADSG---VTAVGDPHQAIYGWRGASAAALDTFHQRFNPTGTALLDSGTSPVEATPV 358

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA-- 364
             E      N S  +   + V +              + L       +     +    A  
Sbjct: 359  LELSTSWRNDSTILDVANFVSAPLRSGVVEDGDPVGEHLTVAPLRARPAAFGLEPGAAFG 418

Query: 365  ---DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
                +  EEA ++   L      + +  A++   R     +  EL   G+   I     +
Sbjct: 419  AFLQDPAEEARTVVAFLAERWSPSAE-MAVLCRTRAQMDPIAAELEAAGLPYTIIGLGGM 477

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                  + + +LL A         +  L+           + L+     L   A    K 
Sbjct: 478  LYVPEVADVRALLTAASDPERGDRVVRLLTG-FGIGARDLRALASLARELTRPATESGKE 536

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE-LAVLLVDHILQCITPLVTYKTN 540
            +       +     + ++  +T +   +  + EE +E  A   +    + +         
Sbjct: 537  APGTHGDHAEADSPLLSEALDTLLRWHEDGVQEEQEESAAARDLTEAGRAVALRTARAIR 596

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
            +     +L + D   L    L        R    +          +  +   +T +    
Sbjct: 597  RIREAVSLPLPDLVALAEQVLDLDIEIAARVGHTMGHRALDTFHETARAFAADTDAPTLT 656

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP----- 655
              +EW+D      D  +          + +L    ++ L +D + + G++E V+P     
Sbjct: 657  GFLEWLDAAEEHEDAMSAPEVEPSPGAVQLLTVHAAKGLEWDVVAVPGMDEQVFPSYTSA 716

Query: 656  ---------------------------------------KNTAKNPFLSRVMQSDLNLKT 676
                                                         P L+  M +      
Sbjct: 717  VKDDLRVAETGWMGSTSTFPFPLRADAGDLPPFTVGDLDPAVTDKPLLTETMSAYKEALG 776

Query: 677  AEKYIGQAAHDFEMANGTRHLIY---TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
             +    +    +      RH +    +   +  + P   SR+L  L        +     
Sbjct: 777  RQSLREERRLAYVAFTRARHELLLTGSHLSKTASKPRRPSRFLTELQRRDLLSPYAEGWV 836

Query: 734  R-GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND----------- 781
               +   +    L      P           +A       + +   + D           
Sbjct: 837  DFDESRPNPLTALTQVGTWPPDADAAEPMDNQAPEAEIEGTAVTDRLADVRRARYAAAAQ 896

Query: 782  -----PYAVYARRILKLDFIPHFKKDPDRTDRGTLF--------HNIITELIKKRINKNT 828
                   A  A+ +              R + G L               L +       
Sbjct: 897  VTAAMGGAAPAQEVPAQAQPDDEMVRRWRLEAGLLLAERTRALSDGPAVRLPEHLAATRL 956

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI------------------------- 863
             ++     +            P        +FH                           
Sbjct: 957  DDLRADRHRFALDLRRPLPPEPRAAGRLGTVFHDAVAQRLSARGTLFGLGQAGVPDSLGP 1016

Query: 864  -----SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF-VDITD 917
                    +LE  E +    + +         I      L    D +     G    I D
Sbjct: 1017 QDRDRIERWLETAENLPLLEDYVLAETETDREITVGATTLRCRMDAVFQRLDGSGWLIVD 1076

Query: 918  YKTGDNPKKETAQKLIDPQLSLE--AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
            +KTG              QLS+   A A   G              Y+ +          
Sbjct: 1077 WKTGRRQVPVD-------QLSVYVHAWAASQGV-----PTGAVRAAYVYVDYPEGRVDEL 1124

Query: 976  NDKKKYSADELSEK 989
            + +   S +++   
Sbjct: 1125 SAEGLLSIEQIQAA 1138


>gi|56551470|ref|YP_162309.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543044|gb|AAV89198.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 768

 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 96/760 (12%), Positives = 211/760 (27%), Gaps = 123/760 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E++    ++ G ++  +P + +   +  +                 
Sbjct: 68  SQILAVTFTNKAAREMQMRVGDLLGSQAENMPWLGTFHSIAAKM---------------- 111

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    L  +      I      W AK LA IID  +    
Sbjct: 112 -LRRHAELVGLKSDFIILDTDDQIRLLKQLIQGQGIDEKQ--WPAKQLAGIIDRWKNRGL 168

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             + +   + + +      A          + +RL+ LNA       + ++    +H   
Sbjct: 169 TPDKIAGKEEDSFADGQGAAL------YLAYQKRLLSLNACDFGDLLLHMLVILTQHREV 222

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I++     +  A    +  +A        +   D       W      + 
Sbjct: 223 LDSYHDRFRYIMVDEYQDTNQAQYLWLRLLAQKNRNICCV--GDDDQSIYSWRGAEVANI 280

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      P   + +L        + +     +      R                
Sbjct: 281 LRFEEDF-----PGAKIIRLEHNYRSTPQILGAASGLITHNNAR---------------- 319

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAI---SIAIALRMSLDENKKKSALITADR 396
                L   +   +     V +I   +  EEA    +    LR +     K  A++   +
Sbjct: 320 -----LGKTLWTERDQGEKVKIIGVWDGAEEARQLVADVQNLRRANIPLNK-MAILIRAQ 373

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R  +       +   I  G             + L  I +  D +A   +V  P   
Sbjct: 374 FQSREFEDIFIAKNLPYRIIGGFRFYERAEIRDALAYLRVIAQPTDDLAFERIVNVPKRG 433

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G            L            D + L       ++                   
Sbjct: 434 IGKKAMEKLYQAAFL------------DRIPLAEAAEKLVSE------------------ 463

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                 L   I Q +  L+   +    +   +S +D T+  +        DE      L 
Sbjct: 464 ----KTLGSKITQSLGQLMNDFSEWRKSLSVVSHADVTRKML--------DESGYKAMLR 511

Query: 577 FEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
              + ++       + E    ++   +   +++ ++ ++D             + ++   
Sbjct: 512 AVNDVQSAGR-LENLTELARAMEEYDDLGSFLEHVSLVMD----HENDPIDDKITLMTMH 566

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L FD + L G  EGV+P   + +         +  L + E+    A      A   
Sbjct: 567 AAKGLEFDHVFLPGWEEGVFPSQRSLD---------EGGLNSLEEERRLAYVGITRAKKC 617

Query: 695 RHLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             + +  + R       +  SR++  L      +    L+K+   + D   +        
Sbjct: 618 CTIFHAANRRVYGQWIASTPSRFISELPDDHIEE-KSLLRKKTPIWRDIWAEDRSKNPAY 676

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
           +  +    PP +   R  +  +  Q      +      LK
Sbjct: 677 NSAKEAITPPWQLASRRGAGWQRAQKAAASPSPAVSHPLK 716


>gi|294631277|ref|ZP_06709837.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
 gi|292834610|gb|EFF92959.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
          Length = 518

 Score =  105 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 58/417 (13%), Positives = 113/417 (27%), Gaps = 28/417 (6%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TLVE+             + +   +++A  ELR      TG  +   P   +        
Sbjct: 66  TLVESVARRVARGQDPERILVLTFSRKAAVELRDRMALRTG--AAHAPRATTFHSFCYAL 123

Query: 89  FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
             A  D  L       +S  ++ + +  L+    +        L          +     
Sbjct: 124 VRAHQDSGLFVEPLRLLSGPEQDVTVRDLLAGQVDLER---LGLAHVRWPDELRACLTTR 180

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             A  +  ++          + L A         W  AA FL         + V   A  
Sbjct: 181 GFADEVRAVLARSRELGLGPDALAAFARRIGRPDWQAAAVFLAEYLDVLDLQGVLDYAEL 240

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                +   R E    +      + +     + PA  RL+  +A    G  +L   D   
Sbjct: 241 VHRAVLLARRPEVADRLAARYDAVYVDEYQDTDPAQVRLLRALAG--GGRTLLAFGDPDQ 298

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               +                 +      +A L          +     ++  M      
Sbjct: 299 SIYAFRGADVNGILQFPQAFPRADGTPAPVAVLRTARRSGAALLAATRLLAQRMP----- 353

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
                     + +    +  ++     +    V +        E  +IA  LR +  E  
Sbjct: 354 ---------LTRLPADKVRAHRELVPARDGGRVEVHTYPTPGAEVDNIADVLRRAHLEDG 404

Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIF 438
               + + L+ A       ++  LT  G+ +D+     PL      + L + L A+ 
Sbjct: 405 VPWGEMAVLVRAGARTIPTLRRALTAAGVPLDVDGDDLPLRHEPAVAPLLTALRAVA 461


>gi|110639638|ref|YP_679848.1| DNA-dependent ATPase I and helicase II [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282319|gb|ABG60505.1| DNA-dependent ATPase I and helicase II [Cytophaga hutchinsonii ATCC
           33406]
          Length = 1041

 Score =  105 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 96/795 (12%), Positives = 216/795 (27%), Gaps = 95/795 (11%)

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGST 236
              A+F       +   +  +         + +++A  E        +     I++    
Sbjct: 224 AAIAEF-----ANFNAAMGAIRRYDYNDMILWVLKAFKENELLLRNYQERYQYILVDEYQ 278

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
            +  +   ++  +A++     +    D       +     K+    +S          +L
Sbjct: 279 DTSGSQNEVVDLLASYWERPNLFVVGDDDQSIYRFQGANIKNIIDFNSKYNP------AL 332

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
             L +     +  +     V      R +   +      T+                   
Sbjct: 333 IVLKENYRSTQAVLDASMAVIKNNNERLVNSVQGLDKQLTAKGIIAASHVEP-------- 384

Query: 357 SDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINID 414
               +IE  NE  E  S+   L     E  +  + A+I    +    +   L +  I ++
Sbjct: 385 ---KIIEYYNELHEEASVVEQLEKLHHEGVDLSEVAVIYRKHSKVADIIKVLEKRKIPLN 441

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDF-----MAIATLVKHPLAKFGFPEKYL--SRA 467
           I   I +        L  +L  I K N++       +  L+          +      + 
Sbjct: 442 IKQSINVLHLPFVQNLIDILAYIQKENEYPDSGEEQLFRLMHFEYFNIDPTDIANISRKT 501

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
           +   E  A+R  +      +L  L L  + +  +            E       +L + I
Sbjct: 502 RRTSESSAIRWRELMSKKEELAKLNLHSLPSILSLEANL--TYWQKEFHNITLQVLFEKI 559

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                 L     +   T     ++ +            L   ++  +   +     +   
Sbjct: 560 TTRGGILSWIMNSSEKTWYMQVLTTFFDFLKEETARNPLLSLKEFLSTIQKMLDNDVRLN 619

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
             KII                                   +  +    S+ L +  + L 
Sbjct: 620 LQKIIHAEKG------------------------------VNFVTAHSSKGLEYRYVFLI 649

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE- 705
           G N   W     ++           N++  +K   +    +      +  L  +   ++ 
Sbjct: 650 GCNSRQWEGQAERSFGFKIPSTITENVE-HDKEEDERRLFYVALTRAKEYLYISYPAKDV 708

Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
           N    + SR+L  L     T                   L +T           +     
Sbjct: 709 NEKELVCSRFLVELTEQETTKTTFVSLSDDAIVQYKLDILQFTEPPVIPLIDAVYLTELL 768

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
           +    S + + + ++ P A Y   +L +            +  GT  H  + +     + 
Sbjct: 769 ESYQLSVTHLNKYLSCPIAFYFENMLMVP-----SARTASSGFGTAIHEALKDFFAAMLA 823

Query: 826 KNTPEINHLMKQIIDSHF--EKENLPPHIDIIWRHLFHKISHSFLEHEE--KIQSSIEK- 880
                      Q +   F  + +N+  H  +I    +     + +  E         EK 
Sbjct: 824 DEEKRFPT--VQYLSEVFKLKLKNVHSHFTLIEYKNYETYGSTVVLPELYETYIGEWEKN 881

Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD---------NPKKETAQK 931
           + +       +E  G+ + G  D+I++  S  V++ DYKTG           P ++    
Sbjct: 882 VLLEHRID-NVEYKGVPIKGNVDKIEIHGS-DVNVIDYKTGKYASSKSKLLPPTEKEPNG 939

Query: 932 L-IDPQLSLEAAALK 945
                Q+      ++
Sbjct: 940 GDYWRQIIFYKLLIE 954


>gi|229521161|ref|ZP_04410581.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae TM 11079-80]
 gi|229341693|gb|EEO06695.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae TM 11079-80]
          Length = 1148

 Score =  105 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 116/987 (11%), Positives = 243/987 (24%), Gaps = 137/987 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +  A +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFAQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRTEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W        I  +       
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQ------PILWRELYAYTR 177

Query: 201 ELN--ASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           E               +   A  +         + I G +   P     +  +  H +  
Sbjct: 178 EQGHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA 297
           ++L     H    I +                                     + Q SL 
Sbjct: 238 LMLTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTVGSEVSPLKGDVENYLQESLH 297

Query: 298 -------KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMR 340
                   LL  +     D   L   +++                 I    L        
Sbjct: 298 LNHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDD 357

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                    P+I      + +    +   E   +   L    + +     +   ++  D 
Sbjct: 358 AKFASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDI 417

Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           N        +         I   IS       +   +    LL           +  L++
Sbjct: 418 NAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLE 477

Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLD 494
            P  +A+F   E+  + AK  +E   +R   NS    +                + L+  
Sbjct: 478 TPAMMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGY 537

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            +  +     +         + + ++  L   +   +  L   ++    T        W 
Sbjct: 538 AMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVETLSELRSQLAQTQSMEQWRYWL 597

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
              +                L  +    +L +L  ++ + G     +      ++T  + 
Sbjct: 598 NELLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLS 652

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
           G  +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  
Sbjct: 653 GTRISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQHRVGD 711

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFD 729
           ++  +          + +    L  +   R   +N   + S  +  LL     +     D
Sbjct: 712 RSRREESRYL-FIEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGD 770

Query: 730 NLKKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PF 760
              +           L                     +     R +             +
Sbjct: 771 ENLESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDY 830

Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIIT 817
               + P      E+++    P   + +R LK+     +   + D      G   + +  
Sbjct: 831 LLEVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFELPLAVLEDDEPFALDGLSAYQLRD 890

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
           EL++  +          +          +   P        L      +    E+     
Sbjct: 891 ELVENLLACCDGAERDQVVAQFAKQQRAQGKLPMAAFGDLELAQSAQQALALAEKIGFLC 950

Query: 878 IEKIFVNIPAKMAI----ESIGIHLTG 900
            + +       + +    +   + L G
Sbjct: 951 HQPLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|260581776|ref|ZP_05849573.1| exodeoxyribonuclease V, gamma subunit [Haemophilus influenzae
           NT127]
 gi|260095369|gb|EEW79260.1| exodeoxyribonuclease V, gamma subunit [Haemophilus influenzae
           NT127]
          Length = 1121

 Score =  105 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 115/979 (11%), Positives = 242/979 (24%), Gaps = 134/979 (13%)

Query: 39  LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94
           L P        I V +    Q L+ E  + TG  + +   +P        + +   A  L
Sbjct: 24  LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
            +  L  P      +  L RLI I+  K  +    L      S          L+  +AD
Sbjct: 78  PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135

Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + D       +W             + +   +       +       K   + W   +V+
Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNDTLFAQIQGNTKWQGELWRALVVD 195

Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                  A+         +   A+    K     I I G      A   ++  +++  + 
Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297
            +            I +   +   +            Q   +                  
Sbjct: 256 HLFFNNPCQEYWGDISDLRFDYLRSRKRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315

Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                          +                 Y  +                    LEN
Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
           K  NI K    + L    +   E   +   L    +++     K   ++ AD N      
Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSLTPKDVVVMVADINQYTPYI 435

Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             +          I   +S      + +  S   +LL           +  L+  P  + 
Sbjct: 436 QAVFGQKNGDAPQIPFSLSDNKLSESDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
            F             +             D  +    +   ++        + +   +D 
Sbjct: 496 RFNISLADLPLVREWVTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555

Query: 518 ELA-------VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                       L   + Q  T L              SI  W ++    L +  +    
Sbjct: 556 LGLNSSYGLKGELAGKLSQFFTVLSALYETLQQA---HSIEKWQEILTALLSDFFVRNED 612

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEKSST 627
               +++ +         +++ E    +        ++I  +I     +        +  
Sbjct: 613 TSDMIFYIQ------EKINELAEHLKTLHFTEELQAEVIADVITMKLEDAPNSLKFLAGK 666

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
           +     L  R + F  + L G+N+  +P+    N F           +            
Sbjct: 667 VNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY--LF 724

Query: 688 FEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC------- 737
            E     R     +   R   +N P   S  + +LL        +N+    +        
Sbjct: 725 LEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQSENVLTVIEHPMTAFSP 784

Query: 738 -------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                           W     +     + +          +        +   + +P  
Sbjct: 785 DNFKYNEKFTRSFATKWLPIAQFDASSNNSEFAVTMTENPEKIEEVELDSLVSFVENPVK 844

Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQIIDSH 842
            +  + L + F    ++  D                   ++      ++ +L +Q    +
Sbjct: 845 FFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYSLNNDLIYLDEQNFADY 893

Query: 843 FEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----SIGI 896
           F +  +   +            I  + LE +EKI    E    +I   +A++    +  I
Sbjct: 894 FRQAEVKGVLPRAEFGKVYAENIRDNVLEFKEKIADLGEPKQASIDFNIAVDWQNENQKI 953

Query: 897 HLTGFADRIDLLKSGFVDI 915
            L G+ D +         I
Sbjct: 954 RLFGYMDALF--GDNSQVI 970


>gi|255523337|ref|ZP_05390307.1| ATP-dependent nuclease subunit B [Clostridium carboxidivorans P7]
 gi|296188270|ref|ZP_06856662.1| ATP-dependent nuclease subunit B [Clostridium carboxidivorans P7]
 gi|255512991|gb|EET89261.1| ATP-dependent nuclease subunit B [Clostridium carboxidivorans P7]
 gi|296047396|gb|EFG86838.1| ATP-dependent nuclease subunit B [Clostridium carboxidivorans P7]
          Length = 1148

 Score =  105 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 80/261 (30%), Gaps = 37/261 (14%)

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
              +    S S +++ +N P++ + +  L               D G+  HN++     K 
Sbjct: 770  YGRHLNISVSRLEKFVNCPFSYFIQYGLNAKERK--VYKLSSPDLGSFMHNVLQVFSSKL 827

Query: 824  INK-------NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL-----FHKISHS--FLE 869
              +       ++      + +I+D   E        +   R+        +I +   +L 
Sbjct: 828  KEENLSWKEIDSEWCEREVSEIVDEILES-MPSSVFNSSKRYKHITNNAKRILNRSVWLI 886

Query: 870  HEEKIQSSIEKIFVNIPA--KMAIE--------SIGIHLTGFADRIDLL--KSGF-VDIT 916
             E   +   E     +                    + L G  DR+D +  +    + I 
Sbjct: 887  TEHMKRGGFEPSGYELSFGNSGDFPPISLQLHSGETVSLIGRVDRVDSMNSEENTYLRIV 946

Query: 917  DYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
            DYK+G    K       +  QL +   A L               + Y +L      D I
Sbjct: 947  DYKSGTKEFKLSDVYYGLQMQLLIYLDAMLTELEKEMNKDAIPGGILYFKLD-----DPI 1001

Query: 975  TNDKKKYSADELSEKSLKNLI 995
               K      E+ E+ +K L 
Sbjct: 1002 VKTKGDIVDSEIEERIMKALK 1022


>gi|290967937|ref|ZP_06559487.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str.
           28L]
 gi|290782076|gb|EFD94654.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str.
           28L]
          Length = 738

 Score =  105 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 71/688 (10%), Positives = 169/688 (24%), Gaps = 112/688 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            +     T +A +E+R    ++ G   KS  L    +      +    ++   +      
Sbjct: 53  RILAITFTNKAAKEMRERVEKLVGETAKSMWL---STFHSFCAKLLRFEIDGHFGY---- 105

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               R   +          + + +K L  +     P +    I  AKNL         + 
Sbjct: 106 ---TRNFTIYDSTDQLT-VVKECVKILNLDEKNFPPRTILGTISEAKNLLYTASEYSRQA 161

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----- 218
             +             +    A+      + + ++L E NA          +R       
Sbjct: 162 ADF-------------YKQKVAE----VFRLYEQKLKESNALDFDDLLSYAVRLLKEDAG 204

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I++     +  A   L   +A       V+   D       W     ++
Sbjct: 205 IREKYQQRFQYILVDEYQDTNRAQYLLTKILAEKWRNICVV--GDADQSIYAWRGADIRN 262

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
               + +                               + ++              +   
Sbjct: 263 IIEFTRDYGD--------------------------AATIKLEQNYRSTKTILQAANAVI 296

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---SALITAD 395
             N +  +  +    +    +    A  E +EA  +A  +    +   +     A++   
Sbjct: 297 ENNEERPQKVLWTENEEGKKIIHYAAQTEHDEAEYVAGCIYNRHEIGGEPYGDMAILFRT 356

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++ +L R  +   +  G           + + L  +    D +++  ++  P  
Sbjct: 357 NAQSRVLEEKLMRHAVPYTMVGGTKFYDRKEVKDVLAYLRLLQNQQDSVSLLRIINVPKR 416

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G                                    +I     +  +  + +    E
Sbjct: 417 NIGKTTLE-------------------------------KIGAYAEDRQISFFMALTEAE 445

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
           + ++       I      +               +      T           H      
Sbjct: 446 EIDITARAKRSIADFTALMCDLAEKATQLNVFSLLEAVLHDTGYAALLEKEAAHEVQGES 505

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                G+ LS     +               D +  +     V    E  S + ++    
Sbjct: 506 RKANVGELLSVAKDYLQTNEDG------NLQDFLENVALVSDVDSFSENDSNVTLMTLHA 559

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + L G++EG++P         +   +  L      +   Q            
Sbjct: 560 AKGLEFPVVFLVGMDEGLFPNARTLMSTAAVEEERRLAYVGITRAERQLYVTNA------ 613

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLG 723
               TR++       + SR+L  +    
Sbjct: 614 ---VTRAMYGRITSYLPSRFLTEIPPHL 638


>gi|296393904|ref|YP_003658788.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
 gi|296181051|gb|ADG97957.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
          Length = 789

 Score =  105 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 82/730 (11%), Positives = 185/730 (25%), Gaps = 89/730 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  EL+     + G +      + +          A+       +   +
Sbjct: 56  GEILAITFTNKAAGELKERVGALVGGR-MWEMWVSTFHSSCARLLRAEAGPQAGFDQNFT 114

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+ +   +L        P                   LA  I  ++ E  
Sbjct: 115 IYDADDS-KRLLAMVAEELELDTNRFPPRM-----------------LAAKISDLKNELI 156

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----A 219
             E   AL   +     +     L    + + ERL   NA       +  +        A
Sbjct: 157 APEA--ALVGVEDPFDLV-----LGQVYRRYQERLALANAMDFDDLIMRAVELLQTNPEA 209

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV-------LPGLDCHIPTAIWN 272
               +G    +++     +  A   L+  +     G  V           D       + 
Sbjct: 210 AQRWRGRFRHVLVDEYQDTNHAQYVLIRELVGAGAGTQVGAETSALTVVGDSDQSIYRFR 269

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             T ++      +   +                           +  +            
Sbjct: 270 GATIRNIEEFERDFPNAR--------------------------TVLLEQNYRSTQNILS 303

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSA 390
             +     N    E ++         +    AD+E +EA  +A  +   +    K    A
Sbjct: 304 AANAVIAHNQGRREKRLWTQAGDGQQIIGYVADHEHDEASFVATEITELVRSGAKHGDVA 363

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           +     N +R  +    R  +   +  G           + + L  I   +D ++++ ++
Sbjct: 364 VFYRTNNASRVFEEAFIRHAVPYRVVGGQRFYDRREVRDIIAYLRVIANPSDAVSLSRII 423

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P    G   +    A              +     + +L         +   +     
Sbjct: 424 NTPRRGLGDRAQAQIAAWAGSRGQTFWDACQAAAGGAVAALAARSQRAVADFVAMIAGLR 483

Query: 511 RLSEEDKELAVLLVDH--ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                       LV           ++   T+        ++ +   + V   + V   E
Sbjct: 484 AELAAGDITVGELVARTVERSGYRAVLADSTDPQDGARLENLDELISVAVEYGELVAARE 543

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              + + +  E    L                   ++++ ++ + D + +     +S  +
Sbjct: 544 GGPVADGFAGELRVNLPEADENEGHA------KLRDFLEQVSLVADSDRLPEGGSQSGVV 597

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            ++    ++ L F  + + GL EG +P   +    +    +  L      +   Q     
Sbjct: 598 TLMTLHTAKGLEFPVVFVTGLEEGQFPHLRSLGDPVELAEERRLAYVGITRAREQLYV-- 655

Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                      TR+LR + +    SR+L  +             +RG     W       
Sbjct: 656 -------SRSITRTLRGSPMTNPPSRFLLEIPPHL------VSWRRGGPDQAWAGFTRSD 702

Query: 749 TKQPHYKRPK 758
                  R  
Sbjct: 703 FGSVSAPRAA 712


>gi|294084828|ref|YP_003551588.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664403|gb|ADE39504.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 1162

 Score =  105 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 82/828 (9%), Positives = 189/828 (22%), Gaps = 91/828 (10%)

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS----PVGYQIALMRAEAEHL-- 222
            LH +  ++          F     +++                      L R+EA     
Sbjct: 326  LHMMATDRCRELTTALYIFGAAFQRHYQSLKESRGLLDYDDLIAVTNRLLARSEAAQWVA 385

Query: 223  --MKGTKGPIIIAGSTGSIPATARLMSTVANH----------------------PNGAIV 258
              +    G +++  +  + PA   L+  +                              V
Sbjct: 386  WKLDNGIGHVLVDEAQDTSPAQWTLLLRLVESFFDGSDMPVAASSIASDTADMDIAPRSV 445

Query: 259  LPGLDCHIPTAIWNTITE----------KSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
                D       +               ++  + +     +     S       L +  +
Sbjct: 446  FAVGDFKQSIYSFQGADPKVLGENRTLLRNKAMAAEIDFRALSLSVSFRSTAPILGLVND 505

Query: 309  DVKRLGNVSN---EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
             +  L  + +       R        + P      + +  E   P         + + A 
Sbjct: 506  LIPDLDGIEDFVSHDLARRHKGGFVEVWPIIDAPVDEEKTEGFTPANIASMQGASAVAAS 565

Query: 366  NEREEAI-SIAIALRMSLDEN--------KKKSALITADRNLARRVKLELTRFGINIDIS 416
            +        I      S D +             L+        +V + L   G+ +  +
Sbjct: 566  HLARTLKSWIGKRPLPSSDNDHMPRKIMAGDILILLRKRDVFFEQVLVALQEQGVAVAGA 625

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
              + L   +    L +L +     +D + +A L+K PL      + +          +  
Sbjct: 626  DRMRLVDQIEIQDLLALGDVALLPDDDLQLAALLKSPLFGISEAQLFDLAHDRGSHSLFR 685

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
            +  +       L  +        +       +                  +   +   + 
Sbjct: 686  QLMRYLGSNDPLGRIADRLEEWCRLVDGGSVFSFFSKVLVDGGRDKFRARLGSSVDEALD 745

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
            +      + G       T             +           +   +  +    I    
Sbjct: 746  HFLAVAQSYGESGGVSLTAFLAAVRAGGGDVKRDM--------DAGNVDEVRVMTIHGAK 797

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             ++A  +   D++            +        +       L    L            
Sbjct: 798  GLEAPIVILPDMLRH----SVPHSPLITGEDQRFIYWEAGSHLRPPFLETARQKASDLRA 853

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                      + ++   L         +              +T             R +
Sbjct: 854  EEDNRLLYVALTRARDGLVIGGWEKRNSRWLENSPYSRIKAYFTEHKDVVEDVDGVLRHI 913

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
                 +   D            +                 P P  P +A+P   S     
Sbjct: 914  A--KTVSEADSVFPSMPDDDAAMRVPDIASEPADTSWLHHPAPDLPPDARPLRPS----- 966

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
                +P  +YA   L         +      RG L H +   L     ++     + ++ 
Sbjct: 967  ----EPANLYAPHPLGFGVTDSRTQAM-ALTRGRLAHRLFEMLPTVPQDQRNTVADRMIA 1021

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
             +       + L P               + L                +P    +   G+
Sbjct: 1022 TV-------DMLSPAQGAQ----LKNEVFTILNDPRFGNLFTPDALAEVPVTGMVRDRGV 1070

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
              +G  DR+ +     V I D+KTG    +++  +    Q++L AA +
Sbjct: 1071 --SGQIDRLFVGDD-SVIIADFKTG-IANEDSPPETYQRQMALYAALI 1114


>gi|315634706|ref|ZP_07889990.1| exodeoxyribonuclease V gamma subunit [Aggregatibacter segnis ATCC
           33393]
 gi|315476654|gb|EFU67402.1| exodeoxyribonuclease V gamma subunit [Aggregatibacter segnis ATCC
           33393]
          Length = 1131

 Score =  105 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 107/898 (11%), Positives = 214/898 (23%), Gaps = 136/898 (15%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           E+   +L   +      +PL P      T+ V +    Q L+ +  E  G  +       
Sbjct: 11  EVQKDILVELIQRQPLSNPLQPE-----TVLVQSPGMAQWLQLQIAEQKGIAANFA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            +      +  A+ L     +   +    +  L RLI  +  +              S+ 
Sbjct: 63  PMPASFIWQLYAENLPDVAQSNQFNKNAMMWRLMRLIPQYLQQEAFHPLRH--YLAHSVQ 120

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW------------------- 180
                   LA  +AD+ D        W        +                        
Sbjct: 121 SEQFKLYQLAGKIADLFDQYLVYRPNWIAAWETHRDAEIRHQIETQLNLNHDRLSAQIEQ 180

Query: 181 ---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
              W  +    +   +                    L+    E+        + I G   
Sbjct: 181 NIAWQASL--WRALVQAVKTETGLDWVQHRAHLHQLLLEKLRENRQLFLPERLFIFGIPA 238

Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN------------------------- 272
              A   +   ++ + +  +            I +                         
Sbjct: 239 LPKAYLEIFQAISAYCDVHLFFNNPCQEYWGDIVDPSFVEKLALRTRTDYFNQANKPLLS 298

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
                        T      Q     L  +  + R+    L  +          I    L
Sbjct: 299 AEQIAQAERQWEVTYAQEKLQVGNPLLASWGKLGRDFSYLLTQLEPNEISAYAEIEPRNL 358

Query: 333 PPDTSDMRNTDILENKIP-NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---- 387
                      +     P N Q+    +      +   E   +   L   L EN      
Sbjct: 359 LSQIQHQILHLMPSGSEPLNYQENDRTLTFHSCHSTMREVEVLQDYLLHLLQENPHLTPK 418

Query: 388 KSALITADRNLARRVKLELTRFG------INIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
              ++ AD +        + R        I   IS        +  +   SLL     + 
Sbjct: 419 DIIVMVADIDKYTPYIRAVFRQHATPQTAIPFSISDNKLSENDVIIAGFLSLLQLKESIF 478

Query: 442 DFMAIATLVKHPLAKFGFP-EKYLSRAKNA-----------LELVALRGNKNSYDIMDLK 489
               +  L+  P  +  F  E                     +  A    +   +    +
Sbjct: 479 SAEDVLALLDVPAIRQRFNIELQDLAQIRDWVKNAGVRFGLEKQPAEPHGETQNNYNSWQ 538

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEE-DKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
           + +   +           WQ  L  +    L   L   + + I  L  +           
Sbjct: 539 AGLERMLLGYALREENGIWQDSLGLDNSFGLKGQLAGQLAEFIAALSDWFKTLQQR---Y 595

Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
           S++ W +  +T               L++      +  +  +  E    +  +    +D+
Sbjct: 596 SVAQWQQHLLTLTDRFFAVTTETEETLFY------IKDVIQQFAEQLQDVHFDERLAVDV 649

Query: 609 ITRLIDG---ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
           +  ++ G   E        +  +     L  R + F  + L G+N+G +P+    N F  
Sbjct: 650 VADVMIGALEENPNHYRFLAGKVNFCTLLPMRSIPFKVVCLLGMNDGEYPRQQPPNSFDL 709

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLR--ENNIPTIASRWLQRLLVL 722
                    +             E     +  L  +   R   +N     S  + +LL  
Sbjct: 710 MQYHRIKGDRARRDDDRY--LFLEALLSAQEYLYISYIGRSISDNQEREPSVLVSQLLDY 767

Query: 723 GGTDFFDNLKKRGQCYLDWT--------------RKLDYTTKQPHYK------------- 755
                 +NL   G+ +                   K D T      +             
Sbjct: 768 ----IVENLPNEGKDWRALLVQQHGMTAFSRKNFEKNDRTFSPSFAQQWLPLVNSQSNQA 823

Query: 756 -----RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                +P        Q     FS +   + +P   +  R L ++F    +   D  + 
Sbjct: 824 LSDFIQPAIAQEDFEQETEIEFSRLVAFVKNPVKFFFERRLGVNFSEQEESIADSENF 881


>gi|283457706|ref|YP_003362292.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133707|dbj|BAI64472.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 1279

 Score =  105 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 113/983 (11%), Positives = 227/983 (23%), Gaps = 156/983 (15%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI----IKSLGD 83
             L E       +    A + I  PT+ A   +R      + +  ++ P       +   
Sbjct: 16  HHLTERALRYLADGNDPARLLILAPTRTAATRMRDTIAASSDRSLSVAPTRAWAAYAFDL 75

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
           +   +    L         +S  ++ + +  L+      +          +   +     
Sbjct: 76  LKRAQTRGLLSGVEGNLKLLSGPEQDVIIGELLANHAEGIAP------GPAWPDVLRDAL 129

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                   + D  D +   +   ED+HAL  E     W   A             L   N
Sbjct: 130 ATRGFRHEIRDFFDRMAEYDLTAEDVHALATEHNQPAWHALAQLHTEYRAV--RALRAKN 187

Query: 204 ASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH------ 252
           A  P        ++ L   E     +     I+I       P+  RL+  +A        
Sbjct: 188 AYDPAVLINDACRLLLRAPEFLAEERRRYDLILIDDVQELSPSIYRLLRLIAAEVAPADA 247

Query: 253 -----------PNGAIVLPGLDCHIPTAIWNTITEK----STNITSSNTTYSTHPQYSLA 297
                        G  V+           +                S  T +    Y L 
Sbjct: 248 AHLTETHPDLFAEGPRVVMTYSDEAVVQGFRGARPDLVTTLQASFPSMRTRTLTTSYRLP 307

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRS----------------MVISKSFLPPDTSDMRN 341
            L+  L                +                        +    P    +  
Sbjct: 308 ALMMPLVADIRRRLPRYTRFVPLTAEQEGTKNGAQEGSKNGAPATFGRINTTPADEALTW 367

Query: 342 TDILEN-----------KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKK 387
               E               + +   + V      + ++EA  IA  L       +   +
Sbjct: 368 GAADEPLLHLGADGKILDPAHYRTAPAGVYKYALSSSQDEANLIAQMLLEERIYGNHPYR 427

Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTS-------------- 432
           +SA+I        R++  L+  GI    SA + P+                         
Sbjct: 428 ESAIIVRSSADVARIRRVLSSNGIPSRTSAALVPVRDEPAVRPFLDALSLLVYARKRGEK 487

Query: 433 -----------------------------LLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
                                            + +  D +       +PL         
Sbjct: 488 ALNPAVHMPAAEGAEAAERGGYEALSASEAEELMRRSLDDVIAEESRANPLGGAQSAITL 547

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
           L+        + +R  +     ++L      R +       + H ++   E        +
Sbjct: 548 LTSRLGGASSMDVRRLRQQLRSIEL-QSGGHRPSDDLLLGALLHPETLPEEGVGRAVHRI 606

Query: 524 VDHILQCITPLVTYKTNK-NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW-FEEEG 581
              +      L   ++            S   K  VT  +    D      NL       
Sbjct: 607 AAVLSAGRKALARPESTSTEVLWALWEASGLEKTWVTQSRGAGPDADAAHRNLDAMIGLF 666

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
           +       ++   G+    + I+  D+    +    V+        + IL    +   ++
Sbjct: 667 EAADRFDEQMRGAGAEQFLDFIDAQDLPMDTLAARGVRQ-----DAVEILTPALAAGQSW 721

Query: 642 DTLILGGLNEGVWPKNTAKNPFL--------------------------------SRVMQ 669
            T+ + GL EG WP  T +   L                                   ++
Sbjct: 722 RTVYVCGLQEGTWPNTTVRGSLLSTGDLTDLCDARLRQRAQQAEQQAGESEQPVPPARIR 781

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
           S        ++             +  L+ T    ++  P     ++        +    
Sbjct: 782 SYPERVRDTRHDELRMFAVAATRASTRLVLTAVRNDDQAPGEFFDFVLPTDAENESPEVP 841

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
             + R    L         T              +      S  E + L  +        
Sbjct: 842 ITRVRRPATLRSLVAELRRTLVEESLNAMRAEDAQDGAPAGSMPEEEALTPEASTYRLDA 901

Query: 790 ILKLDFIPHFKKDPDRT--DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
             +        + P     D   L     TEL+      +  E  +  ++  +   + E 
Sbjct: 902 ASRTLARLANAQAPGAAPDDWWGLLPLSSTELLFAHRPADHAEDENHSEEPAEE--QAEK 959

Query: 848 LPPHIDIIWRHLFHKISHSFLEH 870
                  +       I  S L+ 
Sbjct: 960 PSRRTIALSPSRLETIHSSPLDW 982



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 69/588 (11%), Positives = 157/588 (26%), Gaps = 66/588 (11%)

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G+  +    +++L++   A+ +               +         SR        A R
Sbjct: 598  GVGRAVHRIAAVLSAGRKALARPESTSTEVLWALWEASGLEKTWVTQSRGAGPDADAAHR 657

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                   + +      +++        +    ++    D   A  +    ++ +TP +  
Sbjct: 658  NLDAMIGLFEAADRFDEQMRGAGAEQFLDFIDAQDLPMDTLAARGVRQDAVEILTPALAA 717

Query: 538  KTNKNS----------------TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
              +  +                    LS  D T L    L+       ++          
Sbjct: 718  GQSWRTVYVCGLQEGTWPNTTVRGSLLSTGDLTDLCDARLRQRAQQAEQQAGESEQPVPP 777

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
              + S   ++ +T               +  +    V+   +     F            
Sbjct: 778  ARIRSYPERVRDTRHDELRMFAVAATRASTRLVLTAVRNDDQAPGEFFDFVLPTDAENES 837

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
              + +  +      ++      L   ++  L  ++      + A D   A          
Sbjct: 838  PEVPITRVRRPATLRS------LVAELRRTLVEESLNAMRAEDAQDGAPAGSMPEEEALT 891

Query: 702  SLRENNIPTIASRWLQRLLVL-----GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
                      ASR L RL           D++  L       L   R  D+   + H + 
Sbjct: 892  PEASTYRLDAASRTLARLANAQAPGAAPDDWWGLLPLSSTELLFAHRPADHAEDENHSEE 951

Query: 757  PKPFPP--LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
            P          +    S S ++ + + P          +       +       GTL H 
Sbjct: 952  PAEEQAEKPSRRTIALSPSRLETIHSSPLDWL------VSAARAEAQTDLSRSLGTLIHA 1005

Query: 815  IITELIKKRINKNTPEINHLM---------KQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
            I  E     + +    ++  +         +   D  + +        +       ++  
Sbjct: 1006 IAEEYPTGTLEELQTALDERISSLGVPARKEDETDEEYRERVPWESYALYE--RAKRMIL 1063

Query: 866  SFLEHEEKI--QSSIEKIFVNIPAKM----------AIESIGIHLTGFADRID-----LL 908
                +  +    +  + + V     +           +  +   LTG  DR++       
Sbjct: 1064 RLSYYYRQHMGDAGWQNLGVEGSFAVRVPVPFDPAGEVGELDALLTGRVDRLEGTAPAED 1123

Query: 909  KSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
             +    I D KTG + P     +    PQL+    A++AG+  Q++ R
Sbjct: 1124 GTRRYAIVDLKTGKSKPTGSEMETH--PQLAAYQIAVEAGAGEQLEER 1169


>gi|257068318|ref|YP_003154573.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810]
 gi|256559136|gb|ACU84983.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810]
          Length = 1094

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 98/851 (11%), Positives = 210/851 (24%), Gaps = 139/851 (16%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGSIPAT 242
            L    + + E     +A           R       A  L +     +++     +  A 
Sbjct: 245  LLPLLERFAEIRAADSALDFADQVSLAARVAREVPAASALARRMHRVVLLDEFQDTSVAQ 304

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             ++++ +     G       D       W   +  S    ++       P          
Sbjct: 305  LQMLTDLFG--PGHAACAVGDPQQAIYGWRGASAASLAGFATAFAAPEQP---------- 352

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
              ++R       N    +   + + S          +          P          ++
Sbjct: 353  -VLQRTLSTSWRNDEAVLAAANRLASPLRSAETGVTIPELQ------PRPGAGEGACEIL 405

Query: 363  EADNEREEAISIAIALRMSLDENKKKS-----ALITADRNLARRVKLELTRFGINIDISA 417
            EA +ER EA++I   +     E ++ +     A++   R     +   L R G+ + +  
Sbjct: 406  EAADERAEALAIGRWILERRAEQEEDAPPASAAVLVRARRQIPALVDGLERSGLAVAVVG 465

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
               L      + + ++L          A+  L+  P  + G  +  +           LR
Sbjct: 466  LGGLLHRPEVADVRAVLECAHDPGRGDALMRLLTGPRLRLGARDLAVLGRWRDRLGARLR 525

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL-------------- 523
             +  +    D    V    A            S           LL              
Sbjct: 526  RDGETPGGQDEAESVSLVDAVDDLPPEDWTDPSGRGLSGTGRERLLQVQQILREMRRLLP 585

Query: 524  ---------VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC--------- 565
                        +L     L+  + +  +     +  D         +            
Sbjct: 586  LPLPDLVTAATRLLDVDLALLESEPDSRALADLEAFRDHAAAFDRTARRGGLGAYLDLLE 645

Query: 566  --LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
               DE   L      E     +++    + +   ++ + +    +    +    ++    
Sbjct: 646  ISEDEEAGLAVTAAPEAAHDPAAVTIVTMHSAKGLEWDLVAVAGLTEGTVPSYDLRRAKT 705

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL-----SRVMQSDLNLKTAE 678
              +    +          +  +   L                    +  +  +      E
Sbjct: 706  DEAGRVRVPADGWLGTLANAAVPTALRGDADTLPELAWAEADTQVDAESLIQEFRFAQGE 765

Query: 679  KYIGQAAHDFEMA--NGTRHLIYTRSLRENNIPTIA--SRWLQRLLVLGGT--------- 725
            + + +      +A     R L+ T +     + +    SR+L  +  L            
Sbjct: 766  ESLREDRRLMYVAVTRARRRLLLTSAAWRTGLSSARPRSRYLTEVTDLVPESFRTVQEVP 825

Query: 726  -------------------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK-------- 758
                               +      +      +   + D        +  +        
Sbjct: 826  ETNPLESERPQAQWPPRPGEPEQARARAAALLAEVAGQDDAPADPELAELVRRAVVDLEQ 885

Query: 759  -PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
               PP+   P   S S++ Q    P A     +  L      ++      RGT FH  + 
Sbjct: 886  QAAPPMVHSPPRLSASQVVQQARSPQAAALDLLRPLP-----RRPSAAAARGTAFHAWLE 940

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
                     +  ++  L     D                      +  +F   E   +S 
Sbjct: 941  SRYDSATLLDLEDVLDLEDTPADEAETDH--------------RALREAFTASEWAERS- 985

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF-----VDITDYKTGDNPKKETAQKL 932
               + V  P    I    I + G  D +     G      V + D+KTG  P+    ++ 
Sbjct: 986  --PLVVEQPVHTRI--GQIAVRGVIDAVFADPEGTDGSEGVIVVDWKTGRVPRPAQLRE- 1040

Query: 933  IDPQLSLEAAA 943
               QLSL   A
Sbjct: 1041 RALQLSLYRLA 1051


>gi|222054489|ref|YP_002536851.1| exodeoxyribonuclease V, gamma subunit [Geobacter sp. FRC-32]
 gi|221563778|gb|ACM19750.1| exodeoxyribonuclease V, gamma subunit [Geobacter sp. FRC-32]
          Length = 1087

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 112/927 (12%), Positives = 262/927 (28%), Gaps = 106/927 (11%)

Query: 49  IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
           I V +K   + L  E  +  G             + + ++    ++ +    P +S+   
Sbjct: 35  IVVQSKGMQRWLAMELAKNLG---VWANAEFPFPNALIDQLFTSVIPNLTAPPEISSFHP 91

Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
            +   R++ +    L               P      + LA  +AD  D          D
Sbjct: 92  DVLTWRIMEVLPGYLEQADFQPLAAYLAEDPAGL-KRLQLAGVIADTYDQYTIYR---SD 147

Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
           L A         W  +          W E +      +   ++ +L+      L +G + 
Sbjct: 148 LLASWENGAADGWQASL---------WRELVK-----NSSHHRASLLMQFRRQLGRGKQK 193

Query: 229 PI------IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           P+       + G     P    +++ +A H    + L          I    T       
Sbjct: 194 PVDLPQRISLIGIPTLPPFHLEVLTAIARHTEVNLFLLNPCRQYWGKIVPERTLPRIGQQ 253

Query: 283 SSNTT-YSTHPQYSLAKLLDFLDIKREDVKRL----GNVSNEMYGRSMVISKSFLPPDTS 337
             + +  + + +     L  F    R+  + L    G V+ E        +         
Sbjct: 254 EFDFSGGADYFETGNPLLASFGRTGRDFFETLINDCGEVAPEESFMEPDGNCLLHAIQGD 313

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALIT 393
            +   D    +   +      + +    +   E   +   L   LD++     +   ++T
Sbjct: 314 ILDLRDRRSEQKSIVSCTDDSLRIHSCHSPMREVEVLYDQLLHRLDQDPSMSPRDILVMT 373

Query: 394 ADRNLARRVKLEL----TRFGINIDIS-AGIPLSTTLHSSI-LTSLLNAIFKLNDFMAIA 447
            D          +     R    I  S A   L     ++    ++L+          + 
Sbjct: 374 PDIESYAPYISAVFGSPERAEEKIPFSIADRSLRREGEAAETFLAILDLCGSRFTVTQVL 433

Query: 448 TLVK-HPLAKFGFPEKYLSRAKNA---LELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            +V+  P+ +                    V    + ++     L S   +      +  
Sbjct: 434 DIVEAAPILRRYGLATGDLDLIRQWLSATNVRWGIDAHTRSEHGLPSFGENSWRAGLDRL 493

Query: 504 HVPHWQSRLSEEDKELAVLLVD-------HILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
            + +  +          +            + + +    T             + +WT  
Sbjct: 494 LLGYAMAGNDNRFFAGILPYDHVEGSDTVVLGRFLELCETLFRTAARLTKPRHLHEWTGE 553

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
             T +      +      L  E++   L  +   +   GS         I++I   +  +
Sbjct: 554 LRTLITTFFAPDD-----LNDEDDIGGLLRVIDLLESCGSMAMFTGAVGIEVIRSWVGEK 608

Query: 617 TVKPKIEKS---STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK---NPFLSRVMQS 670
             + +         +     L  R + F  + L G+N+GV+P+   K   +   +   + 
Sbjct: 609 LDRQQRGFGFLTGGITFCAMLPMRSIPFRVICLLGMNDGVFPRRNRKSGFDLMAAAPRRG 668

Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF 728
           D N +  ++Y+   A    + +   H   +   R   +N     S  +  L+      F 
Sbjct: 669 DRNQRDEDRYLFLEA----ILSAREHFYISYVGRSIKDNSLLPPSPLVSELIDYCSKSFT 724

Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP----------------------------- 759
              ++           +D+  +   Y+   P                             
Sbjct: 725 VADREDDDKAAGDALCIDHPLQPFSYRYFCPGNGLLFSYSRENRLAAFAAPPAAEPASFF 784

Query: 760 -FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
             P         + +E+     +P     +R L +  +    +  +  +  +L H     
Sbjct: 785 TRPLPVVTETVINITELVDFFANPCRHLLQRQLGIF-LELRHETMEEDEPFSLNHLCKYA 843

Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
           L ++ + +     +  + + + +   + +LPP    +  +     + S    +    +  
Sbjct: 844 LEQEMVARLVEGEDLSVHRTVAAS--RGDLPPGEPGLVIYDKLAAAASEFAAQVAAVAPG 901

Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRI 905
             +      ++ IES G+ L G  +RI
Sbjct: 902 PPLPT---LELQIESCGVRLVGRIERI 925


>gi|262191392|ref|ZP_06049581.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae CT 5369-93]
 gi|262032723|gb|EEY51272.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae CT 5369-93]
          Length = 1148

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 114/987 (11%), Positives = 246/987 (24%), Gaps = 137/987 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAISWRLMELLP----KLLDRTEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W        I  +       
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQ------PILWRELYAYTR 177

Query: 201 ELN--ASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           E               +   A            + I G +   P     +  +  H +  
Sbjct: 178 EQGHSIYHRANLYQRFIEQLASGNFDRSTWPKRLFIFGISALPPRYIDALRALGEHIDVH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ----------------------- 293
           ++L     H    I +               +    Q                       
Sbjct: 238 LMLTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTVGSEVSPLKGDVEHYLQESLH 297

Query: 294 ---YSLAKLLDFLDIKREDVKRLGNVSNEMYGRS--MVISKSFLPPDTSDMRNTDILENK 348
                   LL  +     D   L   +++        +   S L    +D+ +    ++ 
Sbjct: 298 LSHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDD 357

Query: 349 I--------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                    P+I      + +    +   E   +   L    + +     +   ++  D 
Sbjct: 358 AKFASSSHKPSITAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDI 417

Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           N        +         I   IS       +   +    LL           +  L++
Sbjct: 418 NAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLE 477

Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLD 494
            P  +A+F   E+  + AK  +E   +R   NS    +                + L+  
Sbjct: 478 TPAIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGY 537

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            +  +     +         + + ++  L   +   +  L   ++    T        W 
Sbjct: 538 AMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWL 597

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
              +                L  +    +L +L  ++ + G     +      ++T  + 
Sbjct: 598 NELLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQVISPAIIRQVLTNKLS 652

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
           G  +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  
Sbjct: 653 GTRISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGD 711

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFD 729
           ++  +          + +    L  +   R   +N   + S  +  LL     +     D
Sbjct: 712 RSRREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGD 770

Query: 730 NLKKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PF 760
              +           L                     +     R +             +
Sbjct: 771 EHLESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDY 830

Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIIT 817
               + P      E+++    P   + +R LK+     +   + D      G   + +  
Sbjct: 831 LLEVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRD 890

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
           EL++  +          +          +   P        L      +    E+     
Sbjct: 891 ELVENLLACCDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELVQSAQQALALAEKIGFLC 950

Query: 878 IEKIFVNIPAKMAI----ESIGIHLTG 900
            + +       + +    +   + L G
Sbjct: 951 HQPLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|302521802|ref|ZP_07274144.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
 gi|302430697|gb|EFL02513.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
          Length = 1171

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 64/604 (10%), Positives = 142/604 (23%), Gaps = 49/604 (8%)

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
              F   LL  + L   +    RLL  A    +    L +         P   P      
Sbjct: 111 YHSFAGRLLDDHGLRLGLEPGSRLLADASRFQLAARVLREA--------PGPYPALTRGF 162

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKI 190
             L  +L  +   +         L     +                       A   L  
Sbjct: 163 SDLVSDLLSLDGELSEHLVDPAALSRYDEDLLRTLAETRLSNDQLRKVPEAAAARLALTE 222

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARL 245
            +  +       +            R   EH       +     +++     +  A   L
Sbjct: 223 LTGRYRAAKRSRDLIDFGDQLALSARLAREHPEVGEALRAQYRVVLLDEYQDTSVAQRVL 282

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           +S +     G  V    D       W   +  + +    +  +          L      
Sbjct: 283 LSALFGGGTGHPVTAVGDPCQAIYGWRGASVANLDDFPRHFPHPDGTPARRQSL------ 336

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                      S        +++ +          +  +     P  +     V      
Sbjct: 337 -----------SENRRSGGRLLALANDLAAPLRALHDGVEALHAPAEKAADGFVRCALLP 385

Query: 366 NEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLST 423
              EE   +A ++   +         A++        R++  L    I +++     L  
Sbjct: 386 THAEEIDWLADSIAHYVRTGTSPGEIAVLCRTAGDFARIQAALVAREIPVEVVGLSGLLH 445

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
               + L ++   +       ++  L+  P  + G  +  L   +  L   A   +    
Sbjct: 446 LPEIADLRAVCEVLQDPGANASLVRLLTGPRWRIGARDLALLGRRARLL--AGGRSGEDD 503

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
               L + V      +  +             D E  +         +  L         
Sbjct: 504 PDRKLATAVEGVDPAEIVSLADAVDTFVEGGPDAEDGLPFSAGARARLARLGRELRELRR 563

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
              +  +    ++      +V L            E       + +    T       A 
Sbjct: 564 ALADPLMDVLHRVLAVTGLDVELSASPNALAARRRETLGQFLDIAASFAATEPAASLLAF 623

Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                     +           +T+ +L   +++ L +D + + GL    +P +  +  F
Sbjct: 624 LGYLRTAEQYEKGLDNALPGGENTVKVLTAHKAKGLEWDVVAVPGLVAKQFPSDRGREKF 683

Query: 664 LSRV 667
            +R 
Sbjct: 684 TARA 687



 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 80/776 (10%), Positives = 179/776 (23%), Gaps = 50/776 (6%)

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
               G    I  A     IP     +S + + P  A +    +         ++    T  
Sbjct: 416  RTAGDFARIQAALVAREIPVEVVGLSGLLHLPEIADLRAVCEVLQDPGANASLVRLLTGP 475

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                           A+LL       +D  R    + E    + ++S +       +   
Sbjct: 476  RWRIGARDLALLGRRARLLAGGRSGEDDPDRKLATAVEGVDPAEIVSLADAVDTFVEGGP 535

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
                        +               E   +  AL   L +   +   +T        
Sbjct: 536  DAEDGLPFSAGARA-------RLARLGRELRELRRALADPLMDVLHRVLAVTGLDVELSA 588

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                L               ++   +    SLL  +  L         + + L       
Sbjct: 589  SPNALAARRRETLGQFLDIAASFAATEPAASLLAFLGYLRTAEQYEKGLDNALPGGENTV 648

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
            K L+  K            +   +  L +        ++  T            D     
Sbjct: 649  KVLTAHKAKGLEW------DVVAVPGLVAKQFPSDRGREKFTARASVLPHPLRGDAATLP 702

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             + +   + +           +T              + L         +          
Sbjct: 703  DVPEWTAKGLKAFQDGMRAHQATEELRLGYVTFTRPRSLLLGSGHWWGPEQKRPRGPSAF 762

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
             T                A      D    L   + +   +             +  +  
Sbjct: 763  LTALHDHCVRGHGEIERWAEPPGPGDENPALRQSDPLPWPLPLDPGAHARRREAAARVEH 822

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-----ANGTRH 696
               +L         +   ++P+         +        G  A D          G   
Sbjct: 823  HLGLLQSRRATATTEEPPEDPYDPEWPPEPEDEPEPRPEPGDEAPDPYEEEPDPYEGGPD 882

Query: 697  LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
               +      + P          +        D   +  +    W R LD    +   +R
Sbjct: 883  AYESAPDAYEDGPDPYGDDAAPRVPAPAAHGDDLTPEESRLLDSWDRDLDALEGE--LRR 940

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                      P + + +++ +L  DP       + +    P  +       RG  FH  +
Sbjct: 941  AAASVREVPLPPSLTATQVLRLAEDPDG-----LARDLARPLPQAPKPAARRGARFHAWL 995

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
               +     +    +            E  +              ++  +F       + 
Sbjct: 996  ERRLTAGHEQPHLPLADEGDTEAREDAEISDDLD---------LEELKEAFERTAYAHRP 1046

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRI---DLLKSGFVDITDYKTGDNPKKETAQKLI 933
            +     V +P ++++      + G  D +   D       +I D+KTG +  +       
Sbjct: 1047 AHR---VEVPFQLSLAGR--VVRGRIDAVYASDEDGRRRYEIVDWKTGRDRTRADP---- 1097

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
              QL++   A        ID  ++A   ++ ++    +       +       +E+
Sbjct: 1098 -LQLAVYRLAWAE--RHGIDPEEIA-ATFVFVRTGEAVRPGRLPGRAELERLFAEE 1149


>gi|255027576|ref|ZP_05299562.1| hypothetical protein LmonocytFSL_16652 [Listeria monocytogenes FSL
           J2-003]
          Length = 520

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 85/259 (32%), Gaps = 30/259 (11%)

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
            +    S S +++  +  +  YA+  LKL+   HF+      D G +FH  +  +  +  
Sbjct: 188 GETIHASVSRMEKFFSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELK 245

Query: 825 NKNTP----------EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHE 871
             N            ++  L    +    + E L         ++   +I      + +E
Sbjct: 246 RNNLDWGNLTEEECKQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNE 305

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDY 918
           +   S+   + + +   +  +   +           L G  DRID+ +      + I DY
Sbjct: 306 QAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDY 365

Query: 919 KTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITN 976
           K+  +          +  Q+      +   +   I    + A + Y  +  ++       
Sbjct: 366 KSSSHDLALTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKEL 425

Query: 977 DKKKYSADELSEKSLKNLI 995
             +  + +      +K LI
Sbjct: 426 SDEAIAKELQKSSKMKGLI 444


>gi|292487195|ref|YP_003530067.1| exonuclease V subunit gamma [Erwinia amylovora CFBP1430]
 gi|292900429|ref|YP_003539798.1| exodeoxyribonuclease V subunit gamma [Erwinia amylovora ATCC 49946]
 gi|291200277|emb|CBJ47405.1| exodeoxyribonuclease V gamma chain [Erwinia amylovora ATCC 49946]
 gi|291552614|emb|CBA19659.1| Exonuclease V gamma subunit [Erwinia amylovora CFBP1430]
          Length = 1122

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 97/948 (10%), Positives = 227/948 (23%), Gaps = 110/948 (11%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
             L S  + V +    Q L+    E  G  + I          + + F   L       P
Sbjct: 28  DPLCSEVVLVQSPGMAQWLQMSLAEQFGIAANI--DFPLPASFIWDMFVRVLPDI----P 81

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             S   +     +L+ I  + LP     +     LS          LA  +AD+ D    
Sbjct: 82  KESAFNKSSMSWKLMAILPDMLPGEAFTML-RHYLSDDNDKRKLFQLASRVADLFDQYLV 140

Query: 162 EEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
              +W +        +      +    L  A   +T RL +             +     
Sbjct: 141 YRPQWLNGWEKGRLTEGLGEAQIWQAPLWAALVEYTRRLGQPEW-HRANLYQRFISRLEN 199

Query: 221 HLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
              +       + I G +   P   + +  +  H +  ++      +    I +      
Sbjct: 200 SSSRPANLPDRVFICGISALPPVYLQALQALGKHIDIHLLFTNPCRYYWGDIQDYGFLAR 259

Query: 279 TNITSSNTTYSTHP-------------------QYSLAKLLDFLDIKREDVKRLGNVSNE 319
                        P                   Q +   LL        D   L      
Sbjct: 260 LQSRHRRHYLDGRPVPQFRDAENASSLFNDAGEQQTSNPLLASWGKLGRDNLYLLAQMEP 319

Query: 320 MYGRS--------------MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
               +                + +          ++          +      + +    
Sbjct: 320 NEVFAFVDIEPTNLLQTLKRDLLELEDHAVIGLQKSEWENSRSKRILAADDRSLVIHLCH 379

Query: 366 NEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDIS 416
           + + E   +   L   + ++     +   ++ AD +        +         +   IS
Sbjct: 380 SPQREVEVLQDRLLAMMADDTTLTARDIIVMVADIDAYTPFIQAVFGNAPADRAVPFAIS 439

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELV 474
                          SLL+          +  L++ P    +F   E+ L   ++ +   
Sbjct: 440 DRRASQAHPALQAFISLLSLPDSRFTAEEVLALLEVPAVASRFAIDEEGLRLLRHWVAES 499

Query: 475 ALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
            +R   +   + +L        +                           + +  L+  +
Sbjct: 500 GVRWGLDDDGVRNLDLPATGQHTWHFGLTRMLLGYAMNSEAGDWQGILPFDESSGLIAEL 559

Query: 528 LQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
              +  L+      +        +  W  L    L +  + +      L   E  +    
Sbjct: 560 AGNLAELLMQLNRWQQWLSEPRELDSWLPLCRRMLDDFFISDAETEAALALIE--EQWQQ 617

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
           + +  ++ G           D ++  +D + +  +      +     +  R + F  + L
Sbjct: 618 VINYGVQAGYQQAVPLTLLRDELSSRLDQQRISQRFLAGP-VNFCTLMPMRSIPFKVVCL 676

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRE 705
            G+N+GV+P+      F   +M   L      +         E  N   + L  +   R 
Sbjct: 677 LGMNDGVYPRTLPPLGF--DLMSQQLQKGDRSRRDDDRYLFLEALNSAQQQLYISYIARS 734

Query: 706 --NNIPTIASRWLQRLLVL------------------------GGTDFFDNLKKRGQCYL 739
             +N     S  +  L+                                  +    + + 
Sbjct: 735 IQDNTERYPSVLVSELVEYISQSFCLAEDSARDADASAEAVVKHLHHLHSRMPFAVENFH 794

Query: 740 DWTRKLDYTTKQPHYK--RPKPFPPLEAQPRTYSFS-----EIKQLINDPYAVYARRILK 792
                  +  +       +    PP        S +      + +    P   +    L 
Sbjct: 795 PQAEFRSFAAEWLPAASGQGTAHPPFMQSLPEESETVIDFDRLVRFWRHPVRAFFSLRLG 854

Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
           + F       PD          +    +   +  +  +     K                
Sbjct: 855 VSFQLEETGLPDAEPF--SLDGLSRYQVNSLLLNSLIDGKEGGKLYARQRAAGALPYGAF 912

Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
             ++                + +++ E        ++++   G  L+G
Sbjct: 913 GELFWQEQEAEMSELAARVREQRAAAE------SWEVSLTPGGFTLSG 954


>gi|221134828|ref|ZP_03561131.1| exodeoxyribonuclease V, gamma subunit [Glaciecola sp. HTCC2999]
          Length = 1147

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 77/711 (10%), Positives = 181/711 (25%), Gaps = 56/711 (7%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
            TI V ++     L  E  + TG    I         V  E ++    +  +  P  S  
Sbjct: 36  TTIVVESQGMQHYLNMEIAKKTGLSMNID-----FPLVSREIYSICRSILGDKVPQDSPF 90

Query: 107 QRLLELARLILIWRNK--LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +R   +  +  I ++   + D             P        LAK LAD+ +      +
Sbjct: 91  KREYLVWNIFTILQDPGFISDPRAAYANAYWQEQPEPLLQCFRLAKQLADVYEQYLIYRE 150

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTE----RLVELNASSPVGYQIALMRAEAE 220
            W             W       L    + W +    +LV ++   P   + A +   A 
Sbjct: 151 DW----------LTAWEQGNLKGLNDTLEPWQQLIWEQLVAIHPDHPAALRAAAISQLAT 200

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN----TITE 276
           H  K     I I       P      S VA + +  +            + +        
Sbjct: 201 HQAKLP-KSITIFAVNTLSPTQIEFFSAVAQYIDVYLFFLNPCSQYWGDVVSDKVLLRER 259

Query: 277 KSTNITSSNTTYSTHP-QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            S  I        +HP   +L +    L  + +D+       ++++          L   
Sbjct: 260 LSKGIDELKAEDISHPILANLGQQGRGLFNQLQDINYPDMTDSQLFIAPTADDAPSLLKQ 319

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391
                 +  +     + +   + + +    +   E  ++   L   L    D       +
Sbjct: 320 VQADIASAHVTPVTLHPEDIDASIQIHSGFSAIREVQTLHDELLRILTADPDLQPHDILV 379

Query: 392 ITADRNLARRVKL-ELTRFGINIDIS---------AGIPLSTTLHSSILTSLLNAIFKLN 441
           +                                     PL++     +   +L+      
Sbjct: 380 MCPSVEEYAPFVNSIFRPSYKPAQTDSPQLVCSIADRAPLNSEPTVMMFLDMLSLPDSRF 439

Query: 442 DFMAIATLVKHPLAKFGFP--------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
               I   ++ P  +                         +      +  D   +     
Sbjct: 440 SVTKIIDYLRIPSVQKNLNLTEDELTLCINWLSMSQIKWGLNQAHKASWLDNEAVTEHYT 499

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                 +      H + +   ++      +     + +  L+      ++    L+    
Sbjct: 500 WEWGLSRLALGCLHSEMQEHHDEFAYVDAVEGLNSRILGKLLVLVNRLSTFRAQLNGDKS 559

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +     LQ +      +          + +    S+  +        +   + ++   +
Sbjct: 560 IQEWERLLQEMSQSLFGETST--QLRAQQMIEQTISQFSKQVQTAGYESPIGLALVRESL 617

Query: 614 DGETVKPKIEKS---STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
             +   P          +     +  R + F  + + GLN+G +P+    N         
Sbjct: 618 SDKFSTPDALNQFLTGQVTFSSMVPMRSVPFKMICILGLNDGAFPRIALPNSIDLIAQSE 677

Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRL 719
                 + +   +      + +   +L  +   +   +N     S  +Q L
Sbjct: 678 KQRGDRSRRNEDRYLFLEALISARDYLYLSYQGQSAKDNQTIEPSLVIQEL 728


>gi|87124722|ref|ZP_01080570.1| possible exodeoxyribonuclease V gamma chain [Synechococcus sp.
           RS9917]
 gi|86167601|gb|EAQ68860.1| possible exodeoxyribonuclease V gamma chain [Synechococcus sp.
           RS9917]
          Length = 1117

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 99/898 (11%), Positives = 231/898 (25%), Gaps = 59/898 (6%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIK 79
              L   L E  R  P  P     V + V T    + L  +   + G  + +    P  +
Sbjct: 10  AEWLARILAEQLRLAPPAPFD--EVEVMVNTWPTSRWLGEQLAAVNGISALVRFPFPGSR 67

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
               V      A    + +       + R+L++  L  +      + ++      P    
Sbjct: 68  LRQLVRSLDGDASQADADDPWRAEGLVWRVLDV--LPDLLAEAEAEPLRQWMALHPSGPG 125

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTER 198
               +   LA++LAD ID         + L   L           A  +  +  +     
Sbjct: 126 QLNRDRWLLARSLADAIDDYALYR--PDALERWLHRSGPDPDLPTALQWQPLLVQQLARH 183

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                    V   +  +RA A          + + G +   P    L+  ++   +  + 
Sbjct: 184 CPVPPFGLQVRRAVQRLRAGAAPTECLP-RQLRLFGISSMAPVQVELLQALSGVIDVQLF 242

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
           L      +             +  +            L  +   +  + + +        
Sbjct: 243 LLTPCPDLWQRSGQRRRRLGDHWQAPLDGSWLLEAPRLEAMAGRMGAEFQLLLEGSGDCQ 302

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI----------QKCFSDVALIEADNER 368
                +  +  + +       R   +LE     +          Q     +  + +    
Sbjct: 303 LGERTNGDLFAAPMTSALEANRRPSLLEQLQEQLVVTQDTDLHHQVGDESLRFLASPGRW 362

Query: 369 EEAISIAIALRMSLDE----NKKKSALITADRNLARRVK------LELTRFGINIDISAG 418
            E   +   +   L        +   ++T   +    +          T   +   ++  
Sbjct: 363 REVQLVRDQILQWLAADPTLQPRDVLVMTPQIDHFAPLLSSVFNDAAATGVALPWRLTDR 422

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVAL 476
               +      +  LL    +      +  L+ +P            +      L+    
Sbjct: 423 SQQDSPGLCQSVLQLLEMAGERLTATGLEQLLANPALQAAQQLERSEVEAIHRCLQRSGF 482

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV--DHILQCITPL 534
           R   +  D     +  L     +     V    + +   D       +  + + +    L
Sbjct: 483 RWGLDGRDRRGDPTHSLRWCLDRWLLGLVFDDATTVGNGDTAPFSDGLTPEQLGRWWPLL 542

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                  +        SDW  L +T L+ +  D          ++        + +  +T
Sbjct: 543 DRLARWLDRLGQPRRCSDWIPLLLTLLEELFGDGGAWS---EEKQAVLAALEGWRERADT 599

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
            + +   ++    +   L           +S  + I      R +    +IL GL+   +
Sbjct: 600 CALLLEPSVVVAVLREALSRDS--GRFGHRSGAVTISALEPMRAIPHRVIILMGLDASSF 657

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN-NIPTIAS 713
           P+ + +  F     Q  L   +        A    + +  +HL+ + + R+     T+  
Sbjct: 658 PRQSERPGFHLLEQQRRLGDPSPSDQDRY-ALLEALLSARQHLLISWNARDERRGETLPP 716

Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL---------E 764
               +  +    +                  LD T  QP                    +
Sbjct: 717 AAPVQQWLSLLEEQLGPAAMTALRLQPAANPLDPTNFQPQAPGVLASCDQRLLLARRCLD 776

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII-----TEL 819
              R    S +    +D     A+ +         ++     D G L H+++        
Sbjct: 777 QALRGERGSGVTASASDDLVGLAQPLHWTLSDATAEEANGSLDHGLLDHSLLDAERIERW 836

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHID---IIWRHLFHKISHSFLEHEEKI 874
           +         E     ++ ++   + E L         + +     +     E E   
Sbjct: 837 LAAPQRVWLEEQGLRPQEWLEPIEDFEALDLAERDRQALLQERLQHLIDQLPEAENGR 894


>gi|145295633|ref|YP_001138454.1| RecB family exonuclease [Corynebacterium glutamicum R]
 gi|140845553|dbj|BAF54552.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 278

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 16/233 (6%)

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
            +P   S S        P     R I +L              +GTL H ++  + K   
Sbjct: 12  PRPLALSPSRAGDYQQCPLLYRFRAIDRLPEPKTV-----AQVKGTLVHAVLEYMHKLPR 66

Query: 825 NKNT-PEINHLMKQIIDSHFEKEN-LPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEK 880
            +   P +   +K       E++  L   +     + F   S + L    E +     + 
Sbjct: 67  EEREYPAMVKQLKPTWAQMCEEDAELKELVPEDELYDFLVDSRTLLRGYFEMENPQGFDA 126

Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
               +     +   G+ + GF DR+D   +G V + DYKTG  PK + +Q+    Q+   
Sbjct: 127 TECEMYLDTVLP-NGVPVRGFIDRVDTAPTGQVRVIDYKTGKKPKPQWSQQA-QFQMLFY 184

Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK--KYSADELSEKSL 991
           A       F++I  +    L Y+++     ++      +  +    +L  K  
Sbjct: 185 ALVYWR-MFNEIPAQ--LRLMYLKVNDSMFLNPSREQLEFFERDLGDLWAKIE 234


>gi|16272879|ref|NP_439102.1| exodeoxyribonuclease V subunit gamma [Haemophilus influenzae Rd
           KW20]
 gi|260580031|ref|ZP_05847861.1| exodeoxyribonuclease V, gamma subunit [Haemophilus influenzae RdAW]
 gi|1169573|sp|P44945|EX5C_HAEIN RecName: Full=Exodeoxyribonuclease V gamma chain
 gi|1573962|gb|AAC22596.1| exodeoxyribonuclease V, gamma chain (recC) [Haemophilus influenzae
           Rd KW20]
 gi|260093315|gb|EEW77248.1| exodeoxyribonuclease V, gamma subunit [Haemophilus influenzae RdAW]
          Length = 1121

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 116/981 (11%), Positives = 249/981 (25%), Gaps = 138/981 (14%)

Query: 39  LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94
           L P        I V +    Q L+ E  + TG  + +   +P        + +   A  L
Sbjct: 24  LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
            +  L  P      +  L RLI I+  K  +    L      S          L+  +AD
Sbjct: 78  PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135

Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + D       +W             + +   +       +       K   + W   +V+
Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNATLFAQIQGNTKWQGELWRALVVD 195

Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                  A+         +   A+    K     I I G      A   ++  +++  + 
Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297
            +            I +   +   +            Q   +                  
Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315

Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                          +      +          Y  +                    LEN
Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYILVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
           K  NI K    + L    +   E   +   L    +++     K   ++ AD N      
Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSLTPKDVVVMVADINQYTPYI 435

Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             +          I   +S      + +  S   +LL           +  L+  P  + 
Sbjct: 436 QAVFGQKNGDVPQIPFSLSDNKLSESDVLVSSYLTLLRLKESNFSAEDVLVLLDIPAMRE 495

Query: 458 GFPEKYLSRAKNALE----------LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            F                            G   +     L+ ++L     ++       
Sbjct: 496 RFNISLADLPLVREWVTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                S   K      + H    ++ L       +      SI  W ++    L +  + 
Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQAH------SIEKWQEILTALLSDFFVR 609

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE---K 624
                  +++ +         +++ E    +  N     ++I  +I  +           
Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTLHFNEELQAEVIADVITMQLEDAPNSLKFL 663

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           +  +     L  R + F  + L G+N+  +P+    N F           +         
Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722

Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
               E     R     +   R   +N P   S  + +LL        +N+    +  +  
Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQKENVLTVIEHPMTA 781

Query: 742 TRK----------LDYTTKQPHYKRPKPFPPLEAQPRTYS----------FSEIKQLIND 781
                          + TK     +            T +             +   + +
Sbjct: 782 FSPDNFKNNEKFTRSFATKWLPIAQFDASSNNSEFAVTMTENLEKIEEVELDALVSFVEN 841

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQII 839
           P   +  + L + F    ++  D                   ++      ++ +L +Q  
Sbjct: 842 PVKFFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYSLNNDLIYLDEQNF 890

Query: 840 DSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----S 893
             +F +  +   +            I  + LE ++KI    E    ++   ++++    +
Sbjct: 891 ADYFRQAEVKGVLPRAEFGKVYAENIRDNVLEFKKKIADLGEAKHASVDFNLSVDWQNEN 950

Query: 894 IGIHLTGFADRIDLLKSGFVD 914
             I L G+ D +    S  + 
Sbjct: 951 QKIRLFGYMDALFGDDSQVIH 971


>gi|302536761|ref|ZP_07289103.1| UvrD/REP helicase [Streptomyces sp. C]
 gi|302445656|gb|EFL17472.1| UvrD/REP helicase [Streptomyces sp. C]
          Length = 832

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 96/784 (12%), Positives = 204/784 (26%), Gaps = 61/784 (7%)

Query: 46  SVTIYVPTKRAIQELRSEF----------------IEITGKKSTILPIIKSLGDVVEEKF 89
            V     T +A  EL                     ++    +   P I +        F
Sbjct: 72  QVLGLTFTNKAAGELAERVRKALAQAGVTDPDPSPADVEAGTAGGEPRIST-----YHAF 126

Query: 90  TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
              LL  + L   +    RLL  A        K+       YP    S+P   ++ + L 
Sbjct: 127 AGQLLKDHGLRIGLEPSARLLADATRFQ-LAAKVLREAPGPYPSLTKSVPDLVSDLLALD 185

Query: 150 KNLADIIDI------IETEEKKWEDLHALKNEKYG--MWWLLAADFLKIASKYWTERLVE 201
             L++ +         +TE         L N+        +     L      +      
Sbjct: 186 GELSEHLVEPDALRAYDTELLGVLADTKLTNDDLRKVPEAVRGRLELLELVSRYRAAKRS 245

Query: 202 LNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            +            ++A  R E   L++     +++     +  A   L+S +     G 
Sbjct: 246 RDLFDFGDQIALSARLATTRPEVGALLREEFRVVLLDEYQDTSVAQRLLLSGLFGGGTGH 305

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V    D       W   +  + +    +  +              L   R    RL ++
Sbjct: 306 AVTAVGDPCQAIYGWRGASVANLDDFPEHFPHPD----GSPATRLSLSENRRSGGRLLDL 361

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +N +      + +             + L       +      AL+    E  E +  ++
Sbjct: 362 ANGLAAPLRAMHE-----------GVEALRPAPGAERDGLVRCALLNTHAEELEWLGDSV 410

Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           A  +         A++        +++  L    + +++     L      + L S+   
Sbjct: 411 AHLVRTGREPGDIAVLCRSAADFAQIQAVLVARDVPVEVVGLSGLLHLPEVADLVSVCEV 470

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           +       A+  L+  P  + G  +  L        +          D  D +       
Sbjct: 471 LQDPGANAALVRLLIGPRWRIGARDLALLGRLARQLVARPDAA----DGPDGRLAAALEG 526

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                   +        +      +            L     +   +  +  +    ++
Sbjct: 527 VDPAEVVSLADALETFLDGSAPGDLPFSAAARVRFAHLAQELRDLRRSLSDPLMDVLHRV 586

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
             T   +V L            E       + +            A           +  
Sbjct: 587 LATTGLDVELSASPHALAARRRETLSNFLDVAAGFAALDGEATLLAFLGFLRTAAQYEKG 646

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
                    +T+ +L   +S+ L +D +++  L  G +PK  A   + +        L+ 
Sbjct: 647 LDHALPGGENTVKVLTAHKSKGLEWDVVVVPDLCAGSFPKEKAPEAWTAHPKVLPYALRG 706

Query: 677 AEKYIGQA-AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
               +  A A         +  + T    E       +    R L+L    ++   +KR 
Sbjct: 707 DADTLPAAPAWTSAGLKSFKAALKTHKETEELRLGYVTFTRPRSLLLASGHWWGPTQKRR 766

Query: 736 QCYLDWTRKLDY------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
           +    + + L           +   + P P     A     +      L  DP ++  RR
Sbjct: 767 RGPSAFLQALYAHCEAGFGEIEAWAQEPAPDAENPALAADAAQDHSWPLPLDPASLALRR 826

Query: 790 ILKL 793
               
Sbjct: 827 EAAA 830


>gi|152974672|ref|YP_001374189.1| ATP-dependent nuclease subunit AddB [Bacillus cereus subsp. cytotoxis
            NVH 391-98]
 gi|251764583|sp|A7GM36|ADDB_BACCN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|152023424|gb|ABS21194.1| ATP-dependent nuclease subunit AddB [Bacillus cytotoxicus NVH 391-98]
          Length = 1170

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 74/240 (30%), Gaps = 34/240 (14%)

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
                 L       S S ++      YA +A+  L L     F    D  D G LFH  + 
Sbjct: 782  AVSRILYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALK 839

Query: 818  EL----------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS-- 864
            ++                K    ++ L+ + I    +++ L       +      +I   
Sbjct: 840  KIADKLLREKRTWADLSIKECEHLSILVIEEIAPLLQRQILLSSNRHAYLKQKLQQIIFR 899

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHLT--------GFADRIDLLKSGF 912
             S +  E    S    + + +P  M    ++  +   L+        G  DR+D  +   
Sbjct: 900  TSLVLREHAKASGFVPVDLEVPFGMGGKDSLPPMEFTLSNGVKMEVVGRIDRVDKAEDES 959

Query: 913  ---VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965
               + I DYK +            +  Q+      + + +     Q +    A + Y  +
Sbjct: 960  GTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVISNAGTWMKQGEVASPAGVLYFHI 1019


>gi|229528682|ref|ZP_04418072.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae 12129(1)]
 gi|229332456|gb|EEN97942.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae 12129(1)]
          Length = 1148

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 113/985 (11%), Positives = 245/985 (24%), Gaps = 133/985 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSLGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              L + +ADI D            WE    +        W       +    Y      
Sbjct: 124 RFQLTEKIADIFDGYLVYRPDWILSWEAGKEVAEIADQHPWQPIL--WRELYAY--THKQ 179

Query: 201 ELNASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             +           +   A            + I G +   P     +  +  H +  ++
Sbjct: 180 GHSIYHRANLYQRFIEQLASGSFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ------------------------- 293
           L     H    I +               +    Q                         
Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVAPLKGDVENYLQESMHLS 299

Query: 294 -YSLAKLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342
                 LL  +     D   L   +++                 I    L          
Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIDIQRDSLLHHIQADILHLQEHQDDAK 359

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                  P+I      + +    +   E   +   L    + +     +   ++  D N 
Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         I   IS       +   +    LL           +  L++ P
Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479

Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496
             +A+F   E+  + AK  +E   +R   NS    +                + L+   +
Sbjct: 480 AIMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +     +         + + ++  L   +   +  L   ++    T        W   
Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L  +    +L +L  ++++ G     +      ++T  + G 
Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLVDAGYQQAISPAIIRQVLTNKLSGT 654

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  ++
Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGTDF 727
             +          + +    L  +   R   +N   + S  +  LL        L G + 
Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEH 772

Query: 728 FDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKRPK------------PFPP 762
            ++     +     T +               +  +     R +             +  
Sbjct: 773 LESDDSGRRLVKHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819
             + P      E+++    P A + +R LK+     +   + D      G   + +  EL
Sbjct: 833 EVSWPMELDLVELQRFWRLPVAYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           ++  +          +          +   P        L      +    E+      +
Sbjct: 893 VENLLACCDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952

Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900
            +       + +    +   + L G
Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|311108181|ref|YP_003981034.1| UvrD/Rep helicase family protein 2 [Achromobacter xylosoxidans A8]
 gi|310762870|gb|ADP18319.1| UvrD/Rep helicase family protein 2 [Achromobacter xylosoxidans A8]
          Length = 1147

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 91/774 (11%), Positives = 190/774 (24%), Gaps = 60/774 (7%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239
            L +A      R  +      +        A                +   ++I     + 
Sbjct: 355  LALAVAQLRLRFADTGEVDFIEIAQRAAAALGSADDPGELLLKLDASIRHLLIDEFQDTS 414

Query: 240  PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
                 L+ T+       +G  +    D       +           +         Q   
Sbjct: 415  QTQLDLLRTLTSGWQQGDGRSLFLVGDPMQSIYRFRKAEVGLFLEVADIGVGE--LQPDF 472

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              L D    +   V+ +     ++  R    +   +    S   +  + E  +       
Sbjct: 473  LNLTDNFRSQAGIVEWVNQSFAQLLPRRSDAAAGAISYSPSTAFHEALPEPAVRFHPAWS 532

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
             + A        + A+ +     +     K   A++   R+    +   L + GI     
Sbjct: 533  REGAAPAEAQAEDIAVDLVRQALIDHKGAKHPVAVLVRARSHLGNLTRRLAQEGIRCRAV 592

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
              +PL+     + L  L+ A+    D +A  ++++ P                 L     
Sbjct: 593  DLVPLALRPVVADLVQLVRALSHPGDRLAWLSVLRAPYCGLTLTSLQ------RLFGDDH 646

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL-LVDHILQCITPLV 535
                       L+       A   +      + +     +   A   L     + +  + 
Sbjct: 647  ITPVPVLLERALRIAPQTAPAAAASAPQGSLFDAAPDTPETPAAQNVLGADEFERLRQVA 706

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                +K +  G +  + W +     L             L    + ++L  L  ++   G
Sbjct: 707  AILLDKRNAAGAMPFAAWVESLWRRL-----GGPALYAGLSVANDAESLFQLIERLAPHG 761

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
            +   A     I  +             E S  + I+   +S+ L F+T+IL GL+     
Sbjct: 762  AIDVAALDTGIARLFA-----APDAADEDSGAVEIMTMHKSKGLQFETVILYGLHRAPRG 816

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIG---QAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
                   F     +                 + +              R L         
Sbjct: 817  DQAPLVRFEQSGGRVLFGPVKPRAETEADPLSRYLGAREARRASYEIDRLLYVAATRARK 876

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS- 771
               L   + +                      L   T                + +    
Sbjct: 877  RLHLVGHVSVDEASGQVKTPSSASLLGRLWPCLAVPTPPSLDGETMAPQADGPEWQGEPL 936

Query: 772  ----------FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR---TDRGTLFHNIITE 818
                       + +  L+  P    A R    D   H     +       GTL H  +  
Sbjct: 937  RRVDRAGLAQLARMADLVVSPGFGAAARGAWGDGGEHPAWQLEAGYDAAIGTLSHAWLAR 996

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI---- 874
            + +  +   + +        +     +  +P            +   + L  E  +    
Sbjct: 997  IGQDGVQAWSADALAQRLPAMRRQLTRAGIPASQADAASEAVLETLQATLADERGLWLLS 1056

Query: 875  QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928
            QS   + +  I A   +  I + L+         + G   I DYKTG     E 
Sbjct: 1057 QSGARREWPLIDAAGKVSVIDLALS--------TEDG-WLIVDYKTGRPHPGEA 1101


>gi|134095383|ref|YP_001100458.1| DNA helicase II [Herminiimonas arsenicoxydans]
 gi|133739286|emb|CAL62335.1| putative DNA helicase II [Herminiimonas arsenicoxydans]
          Length = 975

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 121/1042 (11%), Positives = 266/1042 (25%), Gaps = 120/1042 (11%)

Query: 1    MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
            +    P +    P S     ++       +V       + P  L    +   T +A +EL
Sbjct: 25   LATDGPVLIIAGPGSGKTFTLVE-----RIVYLITNKGIAPESL---FVVTFTDKAAREL 76

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
             +       +         +L ++    F +  L         + ++R   L       +
Sbjct: 77   TTRISNRLAELGIQ----FNLNEMYLGTFHSICLRLLEDYREFTRLKRSFTLFDQFDQ-Q 131

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKN--LADIIDIIETEEKKWEDLHALKNEKYG 178
              L   IKD        L I        A++  L   ++ +  E      L A    +  
Sbjct: 132  YFLYQRIKDFRELPDAQLVIGDDQTGRWAQSENLLKWLNKVSEEALDAATLAAAPEPEIR 191

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIA 233
                     L      + E L E N+    G Q   ++   +        +G    +++ 
Sbjct: 192  A--------LATCFAKYQELLHEHNSLDFSGIQYEALQLLEKRPEVLAQLRGKLTHLMVD 243

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
                +     R++  +A       V+   D       +   T ++     +        Q
Sbjct: 244  EYQDTNTIQERILLLLAGERCNLCVV--GDDDQGLYRFRGATIRNILEFPALFDDGQCKQ 301

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
              L                         G  +      + P        +     +P   
Sbjct: 302  VKLTVNYRSHPDIIRFYNEWMKEQVWDDGTRVFRFAKQIVP-------REDEFPDLPAAV 354

Query: 354  KCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSALITADRNLARRVKLE-LTRFG 410
            +  +     +  N   E ++    L+    L +  + + L  + +N         L   G
Sbjct: 355  RLAASDDKDDTTNWHAEVLAFLNGLKASGQLADWNQVAFLYRSVKNDKVVALARFLEAQG 414

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +               ++   L           I    + P  +    E       + 
Sbjct: 415  VPVFSPRSNMFFEREEIRLMIGAL-----------IFLFPQFPKVRAW-TEGVTLPIWDY 462

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
             +    +   +     + K L+       K +  +               +         
Sbjct: 463  YDHQCFKPFIDELRKPENKPLLDWARPLAKRHAVLGQNTDYSFSGLFYQLLQFPLFSRFL 522

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                V       +     + S                    +  L  E   K L  LF++
Sbjct: 523  AEDAVQGVDKGRAARNLGTFSKLLTKFEYL---------HYVSVLNPEFLEKNLRDLFNQ 573

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
             +               ++   I     + +      +  L   +S+ L F  ++ G L 
Sbjct: 574  FMRF-------------LVDGGIGEYEDEAEYAPKGCVSFLTIHQSKGLEFPVVVCGSLE 620

Query: 651  EGVWPKNTAKNPFL---SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
                 + +A +  L     + +         K        +   +  ++L+   +  +  
Sbjct: 621  AVPRKQYSALDVLLEDGGYLSKERFEPLDHIKNFDFWRLFYTAFSRAQNLLVLAAQEKQG 680

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                 S++ +RL                     W        +               + 
Sbjct: 681  RGRSPSKYFERLFYE---------------LPSW-----RDVELSALTFEAVKQINLKRE 720

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             +++ S I    N        + L+   I            GTL H  I ++ K  +   
Sbjct: 721  YSFT-SHITVFENCAEQYRFFKELEFAPIRE-----SPMLFGTLVHQTIEDIHKTVLRGE 774

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
               I+    +   S             +            L + E+   + ++I      
Sbjct: 775  EGSISLDAIKGWFSANYAMLSKKERVYLAPSSQQAALLHVLRYYERENGNWDRIK-EAEV 833

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP---KKETAQKLIDPQLSLEAAAL 944
            ++++      L G  D I   +   V+I D+K+   P   K     +    QL + A  +
Sbjct: 834  EISLIKDQYILKGSVDLI-RGEHDTVEIIDFKSEKKPDMEKDRDRLRQYQHQLEVYAHLV 892

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004
            +  +  ++       L+Y            T D      D    K++    +IV  ++  
Sbjct: 893  EERTGQKVSRLH---LYYTGEDGGNPYVSFTKD------DRAIGKTIARFDDIVARIERQ 943

Query: 1005 EQPFISHLR---LSEKSNIQSE 1023
            +    +      LS       +
Sbjct: 944  DYQIAARPAKLCLSCDMRAYCD 965


>gi|291520410|emb|CBK75631.1| Exodeoxyribonuclease V, gamma subunit [Butyrivibrio fibrisolvens
           16/4]
          Length = 646

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 57/555 (10%), Positives = 159/555 (28%), Gaps = 44/555 (7%)

Query: 151 NLADIIDIIETEEKKWEDLHALKNEK-YGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
            +  +I  +       E L  + N       +   A  L +  + + + +     ++   
Sbjct: 121 QIKSLISEMTQYNISPEKLTEMINSPTMSESFRRKASDLLVIYQAFLDFIEGKYVTTESI 180

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
              + +    +     +   +++ G TG  P   +L+  +    +   V    D   P  
Sbjct: 181 L--STLNEMLDSSEIVSNSTVVLDGFTGFTPIQYQLVEHMLKICDEVAVTITADQDTP-- 236

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
                              S+     + ++   +  +  +   + +    +   S +   
Sbjct: 237 ------LFEVKSEDEVFAMSSEFAMKMNRIAKKVGTEINEPLFISDEKGWLSENSAL--- 287

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKK 387
                  + +        ++   +     +++    + R+E   +AI +   + E  + K
Sbjct: 288 -------TFLERNIFRGEEVYQGENAADSISITGLRSPRDELKYVAITINKLVREGMHYK 340

Query: 388 KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
             A++  +    R +   + T + I   I A   +     +  + SL +   +      +
Sbjct: 341 DIAVVAPNMESYRYLLPGIWTDYQIPYFIDAKTEILFHPMAEAIDSLFDIFDRDFRREDV 400

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              ++  L      E              +RG K  +    ++S   ++           
Sbjct: 401 FRFLRTGLTALTNDEIDYLENYILA--TGIRGKKKYFHPFAIRSNQFNKDEDLLK----- 453

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                   E ++  +       + I    T +    +    L   D         +    
Sbjct: 454 ------VNEIRDKIIQPFIDFEKAIKNTDTVRNIATALYNFLLCFDVEGKINERGKQFSQ 507

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
           D +  +    + +    +  +  K++      K +  E+ DI    +   ++      + 
Sbjct: 508 D-NNPVKAKEYSQIYPIIMDILDKMVSILDEEKVDLGEFHDIYEAGLSAASIGVIPPAND 566

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------NLKTAEKY 680
           ++ +     +RL N   L   G ++   PK       LS++ +  L         +  + 
Sbjct: 567 SVILGDIERTRLSNIKVLFCLGASDDAIPKKVENGGILSQLEREQLLEQGFELAPSDRQK 626

Query: 681 IGQAAHDFEMANGTR 695
             +      +     
Sbjct: 627 SFRQRFYLYLMLTKP 641


>gi|218754981|ref|ZP_03533777.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503]
 gi|289763384|ref|ZP_06522762.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503]
 gi|289710890|gb|EFD74906.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503]
          Length = 1101

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 116/1102 (10%), Positives = 254/1102 (23%), Gaps = 152/1102 (13%)

Query: 4    KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58
            ++  V    P          A    T+     +   N       V     T++A     +
Sbjct: 27   EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 86

Query: 59   ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
             +RS    + G        +   P++ +        F   LL  Y L  P+    RLL  
Sbjct: 87   RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 141

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
              L  +  + +      L  +   +   S    +W    L + +           +L  L
Sbjct: 142  TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 199

Query: 173  KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +      +                      L        ER+             +  R
Sbjct: 200  VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 259

Query: 217  AEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269
              A         +     +++     +  A   ++S++      +G  +    D      
Sbjct: 260  LAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 319

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED-------------------- 309
             W   +  +    +++   S      + +LL       +                     
Sbjct: 320  GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSVAVRA 379

Query: 310  -------------VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
                            L +V  E    +  +   +   +   ++          N     
Sbjct: 380  LRPRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADGVKPPTAAVLVRRNADAAA 439

Query: 357  SDVALIEADNERE-----------EAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405
                L       E           E   +   LR+  D     +A+        R    +
Sbjct: 440  IADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMRVLTGPRWRLGARD 499

Query: 406  LTR-FGINIDISAGIPLSTTLHSSILTS--------LLNAIFKLNDFMAI---------- 446
            L   +   + +S   P + +  S  + +        L +AI                   
Sbjct: 500  LAALWRRALTLSGESPSTASPESIAMAASADADNPCLADAISDPGSAEGYSVAGYGRIGA 559

Query: 447  ----ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
                 + ++  L           R    ++         S      + L           
Sbjct: 560  LAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGGWAGPEHLDAFADVVAGYA 619

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                   S  S       + + + +   + P              +  +   ++      
Sbjct: 620  ERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQVLTVHAAKGLEMAGGGGA 679

Query: 563  NVCLD--EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--TV 618
            ++           + W  +  +    L       G+              + +  +    
Sbjct: 680  HLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAVADRKQLSDKISEH 739

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP---------FLSRVMQ 669
            +  +++         L   +   +  +L   +         + P          + R   
Sbjct: 740  RRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEFLCELKDIIDRSAA 799

Query: 670  SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE---NNIPTIASRWLQRLLVLGGTD 726
            +       E++    A D         +                     L    +     
Sbjct: 800  AGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRGDVERGAALVAAAMSADLP 859

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                         D     D               P    P   S S + +L+ DP    
Sbjct: 860  GSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGAR 919

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
             R + +L   P           G  FH  + +     +  +  ++     + +       
Sbjct: 920  QRLMCRLPKRPDPH-----AWLGDAFHAWVQQFYGAELLFDLGDLPGAADREV------- 967

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
              P  +  + R                  ++     V +P +M I      + G  D + 
Sbjct: 968  GDPEELAALQRA-----------FTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVF 1014

Query: 907  LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
            +   G   + D+KTG  P    A +    QL++   A    +        V   FY  ++
Sbjct: 1015 VDPDGGATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VR 1071

Query: 967  QKFKIDCITNDKKKYSADELSE 988
                +           A  L++
Sbjct: 1072 SGITVVPDELPAPGELAMLLTD 1093


>gi|197103666|ref|YP_002129043.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1]
 gi|196477086|gb|ACG76614.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1]
          Length = 1147

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 93/884 (10%), Positives = 207/884 (23%), Gaps = 98/884 (11%)

Query: 150  KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
              LA   + +       + L AL   +  +        L  A  +           +   
Sbjct: 323  DRLAAARERLRGARVAADTLDALTLAEAYLAAYRVEKQLAGALDFADLIEK-----TRAL 377

Query: 210  YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV-----------ANHPNGAIV 258
                   A   + + G    I++  +  + P    ++  +                   +
Sbjct: 378  LASRPAAAWVLYKLDGGIDHILVDEAQDTAPDQWEIVRALTGEFFAGEALPRRGELDRTL 437

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG---- 314
                D       +     +   + +                +      R   + L     
Sbjct: 438  FVVGDEKQSIYSFQGADPERLILETRRYVAEIAAAGRNGASVPLHASFRSTEEVLAFVDA 497

Query: 315  ----NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                 V   +     +  ++               + +         DV   E+  +R  
Sbjct: 498  VFGAGVPPGVEPLEHIPMRAGERGCVDLWPLEREPKGEAREAWDAPLDVEGEESATKR-L 556

Query: 371  AISIAIALRMSLDE--------------NKKKSALITADRNLARRVKLELTRFGINIDIS 416
            A +IA  +R  +                      L+     L   +   L   GI +  +
Sbjct: 557  ARNIACEIRDLVRRGDAVADRDGRRPARYGDVLILVRKRGALFEEILRALKHAGIPVAGA 616

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
              + LS  +    L +L        D + +A L+K P         +         L   
Sbjct: 617  DRLALSEHIVFDDLMALARFALFPADDLTLAALLKSPFCDLDDAALFDLAHGREGSLWRT 676

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
               +         +    +   +    H P                      + +    +
Sbjct: 677  LLARAGERPDWAAAAGFLQAMREAAREHGPFGFYA-----------------RALGVRGS 719

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
               +  S       ++        L  V   E R + +L           +  K    G 
Sbjct: 720  DGRSMRSRLLRRLGAEAQDALDEFLAQVLAAEGRGVHDLETLAADFAGLDIIVKRELEGG 779

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
              +   +                 K  ++  + +  T   +      ++       +W  
Sbjct: 780  RDEVRVM------------TAHGAKGLEAPIVVLPETTSDQGARGSPMLETADGGFLWCA 827

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
            +   +   S   ++    K  E+ +         A     LI    +  N        W 
Sbjct: 828  SGKADCEASAAARALRQDKETEESLRLLYVALTRA--RERLILCGRIPSNRKEDGLKGWW 885

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
              +      +      ++  C      +     +    +         A   +      +
Sbjct: 886  AAIRAGFEHEAIAPHLRQAACGEVLATRYGPDPEPLGRRVAADAVAAAAPAWSAVSPPPE 945

Query: 777  QLIN--DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
                   P  +    ++         +   R  RG L H ++  L      +       L
Sbjct: 946  AFARYASPSDLGEGTVVAAPSPLAAAQGLGRFRRGDLIHRLLQLLPDLAPPERAAGAAAL 1005

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
            +++  D     ++    +      +       F E          +  V I    A    
Sbjct: 1006 LRRETD---LADDQRAEMAAAALSVLED--PRFAEV----FGPGSRAEVAIAGGAAALPP 1056

Query: 895  GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQI 952
             + ++G  DR+ +L    V + D+KT          A      Q++L +A L        
Sbjct: 1057 ALRISGRIDRLVILPD-RVLVADFKTNRPSPGRIEDADPAYLRQMALYSAVLAEV----F 1111

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
              R++          K               + L  ++L  L  
Sbjct: 1112 PGRRIEAALVWTDGPKLMPVP----------ENLMAQALAELRR 1145


>gi|308234384|ref|ZP_07665121.1| ATP-dependent nuclease subunit B [Atopobium vaginae DSM 15829]
 gi|328944200|ref|ZP_08241664.1| hypothetical protein HMPREF0091_10889 [Atopobium vaginae DSM 15829]
 gi|327491119|gb|EGF22894.1| hypothetical protein HMPREF0091_10889 [Atopobium vaginae DSM 15829]
          Length = 1080

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 120/420 (28%), Gaps = 100/420 (23%)

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-- 693
               +FD ++L G    + P   A +P   + +    +++     +  A HDF       
Sbjct: 569 WLPASFDAVVLSGQTSQMSPLPRALDPL--QQLLVAFDIEKPVTPLACARHDFRALLRLA 626

Query: 694 TRHLIYTRSLRENNIP-TIASRWLQRLLVLGG-------------------TDFFDNLKK 733
             H++  RSL + +   T  S     LL   G                        ++  
Sbjct: 627 QHHVVLERSLFDESSHKTYPSVMYTELLACYGLSSFEDDDVLAHFSHMSMSETGISHMIY 686

Query: 734 RGQCYLDWTR-------KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
            G     + +       ++           P       A     S S+I+  +  PY  +
Sbjct: 687 SGARPQVFAQDNPLCAGQVSKDYIPLVCVSPMGRKAEIADKPLLSASQIEAYLRCPYLWF 746

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----------------KNTP 829
             R L L             + GT  H ++  +  K ++                 +   
Sbjct: 747 NERRLGLTTPD---AGFSPMEAGTFVHRVLELVHTKLLDVAQSKSMHSDALYTIGARANA 803

Query: 830 EINHL------------MKQIIDSHFEKENLPPHIDII---------------WRHLFHK 862
           +                + Q  D H   + L                        +   K
Sbjct: 804 QAPARVSKTADEHTHMLLDQFFDEHLHHQYLKQSQKRYKQLQIFVPHCLEDEGLLNQIRK 863

Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPA---KMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
             HSFL++E  +    E  F  +     + A+E  G+++ G  DR+D+   G   I DYK
Sbjct: 864 DLHSFLDYESGLFEGFEPRFFELGFGKGEAAVEYAGVYVNGSIDRVDVDAHGNALIIDYK 923

Query: 920 --------------TGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
                         T  +P    T +     Q  + A+ L+           V    Y+ 
Sbjct: 924 HKSTYKFLPSYALFTSAHPYTDGTYELAEHIQTLIYASVLQKL----YPNLHVVGALYVS 979


>gi|262166385|ref|ZP_06034122.1| exodeoxyribonuclease V gamma chain [Vibrio mimicus VM223]
 gi|262026101|gb|EEY44769.1| exodeoxyribonuclease V gamma chain [Vibrio mimicus VM223]
          Length = 1148

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 116/987 (11%), Positives = 250/987 (25%), Gaps = 137/987 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRDEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W        I  +       
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQ------PILWRELYAYTR 177

Query: 201 ELN--ASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           E               +   A  +         + I G +   P     +  +  H +  
Sbjct: 178 EQGHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA 297
           ++L     H    I +                                    ++ Q SL 
Sbjct: 238 LMLTNPCQHYWGDIRDRKYLARVAAKKRKLLQINGEQVTVGSEVSPLKGDVESYLQESLH 297

Query: 298 -------KLLDFLDIKREDVKRLGNVSNEMYGRS--MVISKSFLPPDTSDMRNTDILENK 348
                   LL  +     D   L   +++        +   S L    +D+ +    ++ 
Sbjct: 298 LSHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDD 357

Query: 349 I--------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                    P+I      + +    +   E   +   L    + +     +   ++  D 
Sbjct: 358 AKFAISSHKPSIVAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDI 417

Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           N        +         I   IS       +   +    LL           +  L++
Sbjct: 418 NAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLE 477

Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLD 494
            P  +A+F   E+  + AK  +E   +R   NS    +                + L+  
Sbjct: 478 IPAIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGY 537

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            +  +     +         + + ++  L   +   +  L   ++    T        W 
Sbjct: 538 AMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVETLSELRSQLAQTQSMEQWRYWL 597

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
              +                L  +    +L +L  ++ + G     +      ++T  + 
Sbjct: 598 NELLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLS 652

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
           G  +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  
Sbjct: 653 GTRISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGD 711

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFD 729
           ++  +          + +    L  +   R   +N   + S  +  LL     +     D
Sbjct: 712 RSRREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGD 770

Query: 730 NLKKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PF 760
              +           L                     +     R +             +
Sbjct: 771 ENLESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDY 830

Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIIT 817
               + P      E+++    P   + +R LK+     +   + D      G   + +  
Sbjct: 831 LLEVSWPIELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRD 890

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
           EL++  +          +          +   P        L      +    E+     
Sbjct: 891 ELVENLLACCDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLC 950

Query: 878 IEKIFVNIPAKMAI----ESIGIHLTG 900
            + +       + +    +   + L G
Sbjct: 951 HQPLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|115372354|ref|ZP_01459663.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|115370567|gb|EAU69493.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
          Length = 774

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 82/723 (11%), Positives = 194/723 (26%), Gaps = 81/723 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R   +++ G ++  L ++ +           +             
Sbjct: 58  RILAVTFTNKAAREMRERLVQLLGAQAHEL-VVSTFHSSAAMILRREAEAV--------G 108

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           + R   +             + +      P   P    + I   KN A + D ++     
Sbjct: 109 LTRSFVIYDDGDQLNIVKRAMRE--ARVEPSMQPREILHRIDQEKNAARLPDAMQ---VD 163

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            +DL  +                K   + +   L   NA       + L+    +H    
Sbjct: 164 ADDLRGMVV--------------KRTYQTYQRLLRAANAVDFGDLLLLLVSLFRDHPEVL 209

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     + P    L+  +A  P GA ++   D       W   +  +  
Sbjct: 210 EKYRRRFSHVLVDEFQDTNPVQYELLRLLA-PPPGANLVVVGDDDQSIYRWRGASVDNIL 268

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
              +     T+P   + KL       +  ++    V ++   R                 
Sbjct: 269 GFPN-----TYPGAKVVKLEQNYRSDQAILEAAHAVISKNRRRMAK-------------- 309

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRN 397
                  K+ + ++    + L+   +ER EA  +A  +     E        A+      
Sbjct: 310 -------KLWSERQRGEHLQLLILRDERAEAQEVARQIHALQREGFIKYSGMAVFYRVNA 362

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    +   + +G             + L  +        +  ++  P    
Sbjct: 363 QSRVLEEALRLARVPYTLVSGRSFYDRAEVRDAAAYLRLMVNPRSDADLLRIINTPARGI 422

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G             + ++L       + +   +    R     +             +D 
Sbjct: 423 GDTTVERLTTHADHQGISLYEAIAQPEQIPALNSAAVRRLAGVHTLLASLNSFAQGAKDA 482

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             AV  +    + +  L    +++     +L+ ++  +  +   Q   L+          
Sbjct: 483 ASAVDEMLRETRLVESLTAEGSDE-----SLTRAENLREFLGAAQEFDLNRAAASVAAAA 537

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
               +    L + +              +      I              + ++    ++
Sbjct: 538 AVPAEPEEPLPADLDAAPLSADVPP---LQSFLEQISLVGDADAEVGEGKVALMTLHAAK 594

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L FD + L G+ + V+P + A         +         +        F  A     +
Sbjct: 595 GLEFDAVFLTGMEDNVFPHSRALVGEDPDEGEEMA------EERRLCYVGFTRARRRLFV 648

Query: 698 IY--TRSLRENNIPTIASRWLQRLLV--LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
                RSL         SR+L+ +     G         +     +   R+       P 
Sbjct: 649 SLAQCRSLFGELRYNPPSRFLRDVPPTLFGIDPSVQEAPRPVAAPVAPRRRSYEDDDSPR 708

Query: 754 YKR 756
             R
Sbjct: 709 IDR 711


>gi|88601852|ref|YP_502030.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
 gi|88187314|gb|ABD40311.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
          Length = 1149

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 94/862 (10%), Positives = 218/862 (25%), Gaps = 117/862 (13%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM----------KGTKGPIIIAGS 235
              L + + Y+ + L  L   +       L++   E L           +     I++   
Sbjct: 327  RDLALVAGYYFDLLHMLKRQANGVDFNDLIQLTREFLQSHQDIVARHIRPRYQYILVDEF 386

Query: 236  TGSIPATARLMSTVAN--HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
              + PA   +++ +     P    +    D      ++           +      T   
Sbjct: 387  QDTDPAQFEIITAIIGELQPGTRSLFIVGDPKQSIYLFRNAD------VTRFKEAQTRIL 440

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                  L  LD      + +    N ++ R    ++         ++  D  +    +I 
Sbjct: 441  SDCKGNLINLDTSFRSCREVIGCVNYLFSRIFASTEKPWEFGYEPIQVCDDRKASPGSIT 500

Query: 354  KCFSDVAL---IEADNEREEAISIAIALRM---------------SLDENKKKSALITAD 395
                  A      ++ +  EA  +A  +                          A++   
Sbjct: 501  VLLPGKAPKGSERSETKEIEAGMVADLVHQIVSCGSFQITDRDGVMRPAGYGDIAILIER 560

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            R    R    L+R      +  GI   +      + ++L+ + +  D  A+  +++ P  
Sbjct: 561  RTHLTRYTTALSRKETPFYVHGGIGFYSRQEIYDIYNILSFLLRPYDSAALFGVLRSPYF 620

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             F  P  Y              G K  + + +      +R  T+ +           S  
Sbjct: 621  SFSDPLIYHILNV--------PGAKRRWSLYEKLRACAERFCTRPSEIEPSAEILSCSPA 672

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            D+EL +            L+    N       + + +        L      E  +    
Sbjct: 673  DQELILRAAR--------LLESWRNLAGREPVVPLVNRIIRESGILTIYGALEQGEQQA- 723

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI-ITRLIDGETVKPKIEKSSTLFILGTL 634
                    L  +     E G     + ++ + I I                +++ I+   
Sbjct: 724  ---ANLTKLLGIIRGRTEGGYYSLFDLVQDMMISIADEEREGEAALDTLSKTSVNIMTVH 780

Query: 635  ESRLLNFDTLILGGL---NEGVWPKNTAKNPFLSRVMQSDLNLKTAE------------- 678
             ++ L F  +IL  +    EG      + +      ++     +  +             
Sbjct: 781  AAKGLEFPVVILPDMGSSREGKLGPILSGDHPHLYGVRIPDPDQDFDIKETPVYTALSLI 840

Query: 679  ----KYIGQAAHDFEMANGTRHLIYTR----------SLRENNIPTIASRWLQRLLVLGG 724
                +   +    +  A   R  +               + NN              +  
Sbjct: 841  QKEKESAERKRLFYVGATRARDHLVLCGKQPDKFYESVDKSNNRIDWVCTLFGITKDIAE 900

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                 ++             L    +       +  PPL         S  ++     Y+
Sbjct: 901  EGGVISIDPEDGGKPIDITILTDPDQLTRMWAQEALPPLTLPDEYAKLSGTRK--RGLYS 958

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF- 843
                    +  +P           G   H     + +  I   +  +   +  ++   F 
Sbjct: 959  DMPDEKATIRPVPVTDIGLLGKATG---HE--ETIHQVTIPGGSHLLPDEIGTLLHHIFS 1013

Query: 844  ----EKENLPPHIDIIWRHLFHKIS-HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                +   +   I       F       F            + F  +   +        +
Sbjct: 1014 GKDTKSVLVSYGITSPEAESFCNTLYQRFCSTPLIR--DAVRSFQEVSF-ITYSG-NFPV 1069

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
            TG  DR+         + DYK+G        +   + QL++   A +      +   +  
Sbjct: 1070 TGRIDRLIQDSRNEWAVIDYKSG-------DKTGAELQLNVYRIAAE------VLTGQPV 1116

Query: 959  NLFYIRLKQKFKIDCITNDKKK 980
             +F   +K     +      ++
Sbjct: 1117 RMFLYSMKTGEFTEPRFLSDEE 1138


>gi|209965882|ref|YP_002298797.1| helicase, UvrD [Rhodospirillum centenum SW]
 gi|209959348|gb|ACI99984.1| helicase, UvrD [Rhodospirillum centenum SW]
          Length = 1171

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 88/858 (10%), Positives = 200/858 (23%), Gaps = 74/858 (8%)

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE--KKWEDLHALK 173
            +   + +   I+        + +  + A  + LA+ + +    ++       ++DL    
Sbjct: 328  LEALQREAQRILDVTAEMKCVGVAQATAALLTLAEAMLETYARLKRARALLDFDDLILTA 387

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
            +          A  L          LV+                  E             
Sbjct: 388  SRLLAGEGRACAWVLYKLDGGLDHILVD-----------EAQDTNPEQWDVVKAIAEEFF 436

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
               G+     R +  V +           D      +     ++     +     +    
Sbjct: 437  AGQGAADDRRRTLFVVGDDKQSIFSFQRADPAEFARMRRHFADRVAAAQARWEPVNLQTS 496

Query: 294  YS-LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
            +  +  +L  +D      +    V+ +         +  +             E   P  
Sbjct: 497  FRSVGAVLRCVDAVFRLPQARDGVAEDGTEVCHRPFRRGMAGRVELWPVLAPEEAGDPAP 556

Query: 353  QKCFSDVALIEADNEREE---AISIAIALRMSLD--------ENKKKSALITADRNLARR 401
                +++  +EA   R     A  IA  LR                   L+       + 
Sbjct: 557  WTPPTEMERVEAPLARLATLVADQIAHWLRSGERLEARDRPVRPGDIMVLVRRRNRFVQH 616

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            +   L    + +     + L+  L    L +L   +    D + +A ++K PL       
Sbjct: 617  LVRALKDRDVPVAGVDRMVLTEQLAVQDLMALGRFLLLPEDDLTLACVLKGPLIGLTEEA 676

Query: 462  KYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
             +         L     R  +   D       V               ++       +  
Sbjct: 677  LFDLAWDRPGHLWPALARAAEADPDGGPFLRAVGWLRGLLAETDFRAPFELFAGVLSRPC 736

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
                V      +  L     +        ++S   +   +    +   E  +       +
Sbjct: 737  PADPVSGRRALLARLGAEAVDPVDEFVAAALSFEREHVPSLETFLHWLEAGRAEIKRELD 796

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
             G   +    +I+                            K  ++  + +  T+     
Sbjct: 797  AGGGPAGGRVRIM-----------------------TVHGSKGLQAPVVILPDTMSVPEQ 833

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
            +   L   G +    P    +        QS        +        +         + 
Sbjct: 834  SPRILWPDGTDGREVPLFAPRRALEDPACQSARRAADHRRDQEYRRLLYVALTRAEDRLI 893

Query: 700  TR---SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
                 + R         R +++ L     +   +              L    +    K 
Sbjct: 894  VCGWEAGRRTGGDGCWYRLVEQALKAVAEEQDYDFTVVSPAGWQGPGLLLREAQSAPPKP 953

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD------RGT 810
                   E    T           +P         + + +    + P   +      RG+
Sbjct: 954  DSLEAGEEPAGVTLPEWARAGAPAEPAPSRPLTPSRPEGVEPPVRSPLGAEDGLRFKRGS 1013

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
            L H ++  L         P     + + +     ++      + +            LE 
Sbjct: 1014 LVHTLLQVLPDLPAETRGPAAAAWLARPLHGLTPEQQAEIAAETL----------RVLED 1063

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
             +            +P    +      L+G  DR+ +     V I D+KT   P    A 
Sbjct: 1064 PDFAPLFGPGSRAEVPIVGLVGGR--ALSGQIDRLLVT-DTAVWIVDFKTNRPPPTVEAD 1120

Query: 931  KL--IDPQLSLEAAALKA 946
                   Q++    AL+ 
Sbjct: 1121 VPPVYLAQMAAYREALRR 1138


>gi|182679138|ref|YP_001833284.1| double-strand break repair helicase AddA [Beijerinckia indica subsp.
            indica ATCC 9039]
 gi|182635021|gb|ACB95795.1| double-strand break repair helicase AddA [Beijerinckia indica subsp.
            indica ATCC 9039]
          Length = 1164

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 81/860 (9%), Positives = 208/860 (24%), Gaps = 110/860 (12%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI---ASKYWTERLVELN 203
             LA+   D+ D++  E+ + + L     +K           L +     + +        
Sbjct: 315  KLAEQRPDLDDLLYAEQDRLDRLA--DKQKAAAILARTLALLSLTEAIFERYEASKAHQG 372

Query: 204  ASSP----VGYQIALMRAEAEHLM---KGTKGPIIIAGSTGSIPATARLMST-------- 248
                       +  L R++A  ++         I++  +  +  A  +++          
Sbjct: 373  FLDFNDLIERTKALLFRSDARWVLYKLDAGIDHILVDEAQDTSEAQWKILEEMTGDFASG 432

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---THPQYSLAKLLDFLDI 305
            +++  +        D       +        +                ++  +L D    
Sbjct: 433  LSSRVDTRTFFAVGDEKQSIFSFQGAAPHMFDQMRRRFNARFDAGEKAFNHVRLTDSFRS 492

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI--- 362
                ++ +  + +       +++ +      + ++       ++  +        +    
Sbjct: 493  VPGILETVDQIFDHAGHYQGLVAANDPWMPHTALKAQLPGLVELWPLVGPSETEDIRDWT 552

Query: 363  -------EADNEREEAISIAIALRMSLDEN-----------------KKKSALITADRNL 398
                   E D     A  +A  +   L +                       L+ +    
Sbjct: 553  LPLDFPDEHDPPNIVAWRVAQKIAHLLTDRAHEHVYDEKQGLRPIRAGDILILVRSRGPF 612

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
               +   L +  I +  +  + +   +    L +   A     D + +A ++K PL    
Sbjct: 613  FAAIIRALKQLQIPVAGADRLAILQHIAVMDLIAAGRAALLPQDDLTLACVLKSPLIGLT 672

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
              +           L                + +              + Q   ++  + 
Sbjct: 673  DEDLIALAPGRPASLFDALRQSEDPRHAAAAARLDLWHQRIGLPPFTFYAQLLGTDGGRR 732

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                        + P      ++          D T   V  L  +   +     ++   
Sbjct: 733  DLEA-------RLGPEAADAIDEFLNLTLQHERDSTPSLVAFLAELDNRDPSVRRDMETG 785

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                          +    +  +A + ++     +     K        +F LGT     
Sbjct: 786  -------------ADLVRVMTVHAAKGLEAKIVFLPDTCAKASGSHDPLVFSLGTDAH-- 830

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
                           W     K+       +        +++       +         +
Sbjct: 831  ---------DAQILAWSSGKTKDCAALAKAREISRQGEEDEHR---RLLYVALTRAEERL 878

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
            Y         P   S W + +         + +        +  R+L   +  P     +
Sbjct: 879  YITGFHGKKGPGNGS-WHEMIDAALLGSAMEEIPAFWDPAENVRRRLSPGSLSPDDTHSR 937

Query: 759  PFPPLEAQPRTYSFSEIKQL---------INDPYAVYARRILKLD--FIPHFKKDPDRTD 807
                            ++           +    A+ A   L  D         +     
Sbjct: 938  EEEAKTDNKHLLPSWLVEAPPPEAEARPPLRPSSALAAADGLDEDFMPTAATPANLAALQ 997

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
            RG L H ++  L     +         +               ++D     L    + + 
Sbjct: 998  RGRLIHLLLQYLPSITPSHRQQAAMGFLGIKAR----------YLDGKTHALLTAEALTI 1047

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924
            +E  +     + +    +     I       + + G  DRI       V + DYKTG  P
Sbjct: 1048 IEDPKLRGLYLPRSLAEVAVAGTISLGAGRTLSVNGRIDRIGET-DEAVLLADYKTGAMP 1106

Query: 925  KKETAQKLIDPQLSLEAAAL 944
            +     +    Q++L  A L
Sbjct: 1107 RNGRTPETYLTQMALYRAVL 1126


>gi|213691704|ref|YP_002322290.1| ATP-dependent nuclease subunit B-like protein [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|213523165|gb|ACJ51912.1| ATP-dependent nuclease subunit B-like protein [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 1101

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 106/856 (12%), Positives = 228/856 (26%), Gaps = 162/856 (18%)

Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
           I+      + A   L            VL  L   +   +    T       +       
Sbjct: 140 IVELHNDGVSAEEVLALAAHQSNARLSVLGSLLQLVEQRLGKRYTFPGAAHETICAWAQR 199

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
           H       L  F  +   +++ +  ++  ++   MV + S      +  R  D   N + 
Sbjct: 200 HGSNRWFYLYGFAHLNASEMRIVHTLAQYVHLTVMVGAGSDPDYLEALQRRDDGNRNTLS 259

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDE-----NKKKSALITADRNLARRVKLE 405
           +I    +  ++    +   E    A +++  + +                 +   ++  E
Sbjct: 260 SIFASSASTSVCAMPDTTAEVRYAAASIKKFIADNPEISYGDVLVTSRDLGSYQAQIASE 319

Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
            T  GI I+I+A   +     +  +  LL++        +I  +++  +           
Sbjct: 320 FTYQGIPINIAASSTMLDHPFADAILGLLDSATYELQPQSILRILRSGIFSRYLN----- 374

Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                                    L    I   +N  +  +  +   + D   A  L  
Sbjct: 375 -------------------------LTPTAIDDIENQLNSNNPATVWIDTDIPFAAHL-Q 408

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
            I   I         + S     ++           Q +          +    +     
Sbjct: 409 KIRSLIQQAADVFRPRPSATVREALGGMVGFLTEYAQTI-EGSAPVWTVIMNAFDDMVQQ 467

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                  E           +   +   +  +++  +   +S + +L      L  +  +I
Sbjct: 468 LGNDYFAEYVG-------IFARNLASTLAAQSIDSRPVSASAVDVLPMSSP-LHPYRYVI 519

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNL----------------KTAEKYIGQAAHDF- 688
           + G +E   P    +   L    + DL+                  T E+  GQ    F 
Sbjct: 520 VLGCSESQLPAIPHETGLLDDGERLDLSQFLTSQGKTLEAWNVLSGTVERRSGQEPLWFN 579

Query: 689 -EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
             +A+ T+ L  T      N     S ++ +     GT     +    +  +        
Sbjct: 580 GVVASATQQLSMTYPKSLRNAAQACSPYISQ--WETGTSDTSEIIGASKRAVPTVETEYR 637

Query: 748 TTKQPHYKRPKPFPPLEAQPRT--------------YSFSEIKQLINDPYAVYARRILKL 793
              +    R    P    +                  S S I+    +PY  + +  LK+
Sbjct: 638 PLDRELAYRLFTRPDYVHRVYRTHGADPSISTRVFNASVSAIETYYRNPYEYFLKYGLKV 697

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKR--------------INKNTPEINHLMKQ-- 837
           +    F    D    GT +H ++   +                      P++  L+    
Sbjct: 698 NVANAF--AFDAALEGTFYHAVLEHAVNAWIERHKNERDLNGLPPQPTAPDMQELIADYS 755

Query: 838 ----------IIDSHFEKENLPPH--IDIIWRHLFHKISHSFLEHEEKIQSS------IE 879
                     +++     E L     + +I R L   +    ++   + ++       + 
Sbjct: 756 RLDRGCNQWTVLNEDPRMEVLRSSNRMRMIHRQLVDTLMDFAVDAAAQREALSSAQTMLT 815

Query: 880 KIFVNIPAKMAIESIG-----------------------IHLTGFADRIDL--------L 908
              V         + G                       + + G  DRID          
Sbjct: 816 PTCVEQVFGNVGGTTGAWQSPYSGEQLIGRARDKEIPVALRINGKVDRIDTVIRDTNISR 875

Query: 909 KSGFVDITDYKTGD-----NPKKET------AQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
           +S  + + DYK+        P +             + QL   A+A +  S        V
Sbjct: 876 ESAGIVVLDYKSSARTLFGKPSRNDGGRASNVYYGHELQLFTYASAAQHNS-----GMPV 930

Query: 958 ANLFYIRLKQKFKIDC 973
           A +F++ +K    I  
Sbjct: 931 AGMFFLPIKPSATIRE 946


>gi|94970649|ref|YP_592697.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus Koribacter
            versatilis Ellin345]
 gi|94552699|gb|ABF42623.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus Koribacter
            versatilis Ellin345]
          Length = 1135

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 93/772 (12%), Positives = 195/772 (25%), Gaps = 104/772 (13%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--------GPIIIAG 234
                 L +A  +      E          +A   A  E                 +++  
Sbjct: 379  ALFRVLPLAVGHLRTVFAERGEVDFSEIALAAKAALGEEGHPTDLALHLGYKIQHLLVDE 438

Query: 235  STGSIPATARLMSTVANH---PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
               +  + A L+  +        GA +    D       +          + +  +    
Sbjct: 439  FQDTSLSQAVLLERLIQAWSPEMGATMFVVGDPMQSIYGFRQAEVTLFTRSWN--SGFAQ 496

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
                 A+L      + E V                        + +        E     
Sbjct: 497  MPLEQARLTANFRSRPELVTWFNQT---------FEHVLVADNEVTGAVKYAPSEAAREP 547

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
             Q        + +    EEA  +   L+  L  + K  AL+   R+    +   L   GI
Sbjct: 548  SQNAGPGFHSVASKAFEEEAARVIEVLQQELKGDAKSIALLVRSRSHMAHIAPALREAGI 607

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
                     L        L ++  A+  L D  A  T+++ P +     + +        
Sbjct: 608  AFRSKEIDVLGERQTVRDLHAMTKALVNLADRTAWLTVLRGPWSGLQLEDLWTL------ 661

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                                                 +  + E  +E   +L D   + +
Sbjct: 662  --------------------------------CKDGERKTVWELLRERRGMLSDRAQKVL 689

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
               +       +  G  S+    +     L                + + + + +    +
Sbjct: 690  ARTMPALDAAVTQRGRTSLRALVESLWVSLGGPAALGRT-----ERKAKLRDVEAYLDLL 744

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                SC + +       + + I     +P       + ++    ++ L FD +IL GLN 
Sbjct: 745  QRVESCGEVDEKR----LEQEISRLYTRPDASSEIRVEVMTIHGAKGLEFDVVILPGLNR 800

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLK--------TAEKYIGQAAHDFEMANG------TRHL 697
             +  +      +  R++  + +L         T  K  G  A+   M  G      T+ L
Sbjct: 801  WIRSEGGQLLNWRERIIGEERDLLLAPMDAVGTDRKKEGSIANYLAMLGGECSAEETKRL 860

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL--DYTTKQPHYK 755
            +Y  + R             RL ++      +   +RG        ++   +        
Sbjct: 861  LYVAATRAKE----------RLHLVTTMPAENKEPERGSLLSLLPAEVFGRFLKVPTPEA 910

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK----DPDRTDRGTL 811
              +                      +P     R  +  D             D    GT+
Sbjct: 911  EDEEEQRTPNLSHRLVPDWQLPAAPEPLKFETRYPVAADVREREHTFERVQFDLPRIGTV 970

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
             H  + ++  +     T E        I +   ++ +       W     +   + L H+
Sbjct: 971  THRFLQQIGDEGPGGWTEERIAKTAPRIRALLLQQGIRSSELAKWEETVTRALRNTLAHD 1030

Query: 872  EKIQ--SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
            +        E          A++     +    DR  +       + DYKT 
Sbjct: 1031 KGQWILKQRESASNEYGLTSALDGPRRSI--KVDRTFVEGE-VRWLIDYKTS 1079


>gi|33592640|ref|NP_880284.1| putative nuclease/helicase [Bordetella pertussis Tohama I]
 gi|33572286|emb|CAE41838.1| putative nuclease/helicase [Bordetella pertussis Tohama I]
 gi|332382057|gb|AEE66904.1| putative nuclease/helicase [Bordetella pertussis CS]
          Length = 1134

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 85/712 (11%), Positives = 178/712 (25%), Gaps = 48/712 (6%)

Query: 228  GPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
              ++I     +      L++T+       +G  +    D       +           + 
Sbjct: 404  RHLLIDEFQDTSQGQIDLLATLTAGWQDGDGRTLFLVGDPMQSIYRFRKAEVGLFLQVAE 463

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                   P     +L D    +   V  +  V  ++  R+       +    S   +   
Sbjct: 464  RGVGQIRP--GFLQLTDNFRSQGGVVDWVNRVFAQLLPRANDADSGAIAYSPSTAFHETA 521

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
                +          A        + A+ +  A     + ++   A++   R+    +  
Sbjct: 522  PGEAVLFHPAWECGDAASAERQAEDIAVGLVRAALAEHEGSRHPVAILVRARSHLGSLTR 581

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L + GI       +PL      + L  L  A+    D +A  ++++ P           
Sbjct: 582  RLAQEGIPCRAVELVPLGLRPVVADLVQLARALAHPGDRLAWLSVLRAPWCGLTLTSLQR 641

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                + L  V                L+   +     +                    L 
Sbjct: 642  LFGADQLTPVPT--------------LLERALRGAARSEGGQGSLFDAPAPGCLAEQALA 687

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
                + +  +     ++ +  G L ++ W +     L                  + ++L
Sbjct: 688  PDEYRRLRAVAAILLDRANDAGLLPLAAWLEQLWRRL-----GGPGLYAGSSAASDAESL 742

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
              L  ++   G          +  +              +  T+ I+   +S+ L FDT+
Sbjct: 743  FQLIERLAPHGGLDAGLLDTAVARLFAA------PQATGEQGTVEIMTMHKSKGLQFDTV 796

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ--------AAHDFEMANGTRH 696
            IL GL+            F     +  L                   A      A  T  
Sbjct: 797  ILYGLHRAPRGDQAPLVRFEQSRGRVLLGPIKPRAETEADPVSRYLGAREARRAAYETDR 856

Query: 697  LIYTRSLRENNI-PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
            L Y  + R       +A   +        T    +L  R   +L   +  D    Q    
Sbjct: 857  LFYVAATRARQRLHLVAHVAVDAASGQARTPASASLLGRLWPHLSVPQPPDVAQDQAAAT 916

Query: 756  RPKPF----PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
              +P     P         +    + L  +  A         +      +       GTL
Sbjct: 917  GEQPALVGEPLRRLAGAGLASLAARTLPREAAAGVYGGGQGAEHPSWQLEAGYDAAVGTL 976

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
             H  +  +        + +   +    +     +  +P                S L+ E
Sbjct: 977  AHAWLARIGGDGPQHWSADALAVRLPAMRRQLTRAGIPAGQADAAAQAVLDTLQSTLDDE 1036

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
                   +        +  +      ++   D     + G   I DYKTG  
Sbjct: 1037 RGRWLLGQARA---RREWPLIDAAGRVS-VIDLALSTEDG-WLIVDYKTGRP 1083


>gi|117620163|ref|YP_858410.1| exodeoxyribonuclease V, gamma subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561570|gb|ABK38518.1| exodeoxyribonuclease V, gamma subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1116

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 104/946 (10%), Positives = 245/946 (25%), Gaps = 97/946 (10%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            LL   LV   R  PL+        I V +    Q L+ E  +  G  + I         
Sbjct: 11  DLLKELLVSRIRQAPLS-HPFDREQILVQSPGMAQWLKLELAKAFGIAANI--DFPLPAS 67

Query: 84  VVEEKFTADLLLSYNLNPPVSNI--QRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            + E FT  L      +P        +L+ +   +L      P        ++  +    
Sbjct: 68  FIWEMFTRVLADVPRQSPYNKGAMSWQLMTILPALLDRPAFAPLAAYLGGDDADPAKDPE 127

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 L + +AD+ D        W                ++    +   + W E +  
Sbjct: 128 QVRLWQLCQKVADLFDQYLVYRPDWIARWEQGEGLSQELAGVSGQDWQP--ELWRELVAR 185

Query: 202 LNASSP-VGYQIALMRAEAEHLMKGT------KGPIIIAGSTGSIPATARLMSTVANHP- 253
             A SP   ++  L       L +           + + G +   P     +  + + P 
Sbjct: 186 TLALSPSGYHRANLYEEFIHELQRTATLPGKLPQRVFVFGISALPPRYVEALLALGSRPE 245

Query: 254 -NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD-IKREDVK 311
               + +     +    + +  T           T     Q     LL  +  + R+ + 
Sbjct: 246 VEVHLFVTNPCRYYWGDLLDRKTLARLENKLKPGTDIETLQGPANPLLASMGKLGRDYLH 305

Query: 312 RLGNVSNEMYG----------------RSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
           +L  +                         +        +    +      +    +   
Sbjct: 306 QLMELEVPQIEAFVDIEEMDGKGNIKLLHAIQKDVLELAERGAGQFDLDASHHKSPLDPA 365

Query: 356 FSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL--TRF 409
              + +        E   +   L    +++     K   ++  D N        +   R 
Sbjct: 366 DGSLQIHACHGPMRELEVLHDRLLALFEQDTSLTPKDVVVMMPDVNSYGPYIQAVFGARG 425

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRA 467
            I   +S       +       +LL           +  +++ P  L +F   ++  ++ 
Sbjct: 426 QIPFAVSDRAASQESPLLQSFLALLRLPNARFGAGELLAILEVPAVLRRFELDDEEFNQL 485

Query: 468 KNALELVALRGNKNS--------YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
           +  ++   +R   +           +     L   R              + +       
Sbjct: 486 RVWVQETGIRWGLDDGYPERFDLPPLSGNSWLFGLRRMLLGFAMGDGEPVAGILPYADIE 545

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
               +         + +             + +W       L+   L +  +   L  + 
Sbjct: 546 GQQGLALGKLAW-FVDSLAEFLPRLQQAQPLGEWVACLNALLERFYLADEDEERQL--QL 602

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
               L+   +++ E       +A    D +  ++ GE+   +   +  +     +  R +
Sbjct: 603 IRSQLADWLAQLGEARFEQPISADLLQDYLGSVL-GESRSSQRFLAGQVNFCTLMPMRSI 661

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LI 698
            F  + L G+N+GV+P+      F   +M          +         E     +  L 
Sbjct: 662 PFKQVCLLGMNDGVYPRTLPPMGF--DLMAVAGRRGDRSRRDDDRYLFLEALLSAQQGLY 719

Query: 699 YTRSL--RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY--------- 747
            +      ++N   + S  L  L+      F     ++        R L +         
Sbjct: 720 ISYQGFSAQDNSDKVPSVLLAELIDYVRQGFVLAGDEQLDDESSGKRLLAHLITQHPLTP 779

Query: 748 -----------------TTKQPHYKRPK-----------PFPPLEAQPRTYSFSEIKQLI 779
                                     P+           P PP   + +    +E+ +  
Sbjct: 780 YSHAYFYPAAGSGLFTYAADWLPALHPQRGAANFQSGELPLPPEWGKEQGLELAELLRFY 839

Query: 780 NDPYAVYARRILKLDFI--PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
             P   +  R LK+ F       ++ +  +   L H  + +L+          +    + 
Sbjct: 840 RQPARYFLNRRLKVWFELNEANIEESEPFELDGLQHYQLKDLLLDAHLAQGDSVVRRERL 899

Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
            +     +      +         K++          ++  + + V
Sbjct: 900 QLTGLLPQGWFGSLLLEDLDEQMGKLADRLRPWVAANEADKQAVEV 945


>gi|108806487|ref|YP_650403.1| exonuclease V subunit gamma [Yersinia pestis Antiqua]
 gi|167399863|ref|ZP_02305381.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|108778400|gb|ABG12458.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Yersinia pestis
           Antiqua]
 gi|167050571|gb|EDR61979.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
          Length = 1123

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 87/803 (10%), Positives = 195/803 (24%), Gaps = 87/803 (10%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL+    ++N               + V +    Q L+ +  +     + I 
Sbjct: 11  DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANI- 60

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
             +  L           +L         S      +L  L+      L +       +  
Sbjct: 61  --VFPLPATFIWDMFTRVLPDIPKESAFSKEAMTWKLMWLLP----DLLENPLFSPMKRY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191
           LS          LA  +AD+ D            WE    ++       W      L + 
Sbjct: 115 LSDDGDRRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIEGLDDAQQWQA---LLWVE 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249
              +T +L +             +    +  +        + I G +   P   + +  +
Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIHQLLKSDVCPQGLPKRVFICGISALPPIYLQALQAL 230

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HPQYS------- 295
             H +  ++      +    I +                 +       HPQ +       
Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYTFLAKLQSRKRRHYRESIELSLFRHPQQAEQLFNTD 290

Query: 296 -----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349
                   LL        D   L +  +E+      +             +   LE+   
Sbjct: 291 GEQNLSNPLLASWGRLGRDHMYLLSQIDEIQEVHAFVDIEPDNLLHGIQHDMLELEDHAV 350

Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391
                           +      ++     + + E   +   L   L    +   +   +
Sbjct: 351 IGTTPETLARSDQKRRLDLDDRSLSFHVCHSPQREVEVLQDHLLGLLAADPELTPRDIIV 410

Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
           +  D +              +   +   IS               +LL+          +
Sbjct: 411 MVVDIDSYTPYIQAAFGNAPSERYLPFAISDRKASQAHPALHAFITLLDLPQSRFTAEQV 470

Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497
             L++ P     F   E  L R +  +    +R   +  ++ +L        +       
Sbjct: 471 LALLEVPALATKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWRFGLTR 530

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556
                               + +  L   +   +   L+     +        +S+W  +
Sbjct: 531 MLLGYAMDSTAGDWQGILPYDESSGLAAELAGQLADMLMHLSQWRQQLGQPRELSEWLPI 590

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L      ++     L   E  +    +    I              D +   +D E
Sbjct: 591 CRQLLDTFFDQDNDTEAALVLIE--QQWQKVIGYGIAAQYPDVVPLNLLRDELAARLDNE 648

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P+      F   +M   +    
Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPQGF--DLMAKKVRRGD 705

Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
             +         E      + L  +   R     +   R+L  L+         +    G
Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSK--RYLSVLVSELIEYVAQSYHLPG 763

Query: 736 QCYLDWTRKLDYTTKQPHYKRPK 758
              L         T+       +
Sbjct: 764 DEKLSADDSAQRVTQHLLCWHAR 786


>gi|212711216|ref|ZP_03319344.1| hypothetical protein PROVALCAL_02288 [Providencia alcalifaciens DSM
           30120]
 gi|212686384|gb|EEB45912.1| hypothetical protein PROVALCAL_02288 [Providencia alcalifaciens DSM
           30120]
          Length = 1124

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 88/770 (11%), Positives = 191/770 (24%), Gaps = 99/770 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI---LP 76
           +++  L+   +  +    P          + V +    Q L+ E  +  G  + I   LP
Sbjct: 11  DLLKELIAHLMENDPLTHPFEQE-----IVLVQSPGMSQWLQIELAKRFGIAANINYPLP 65

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
                   + + F   L       P  S   +     +L+ I    + +   +      L
Sbjct: 66  AT-----FIWDMFRRVLPDI----PKESAYTKQAMTWKLMTILPTVINEAEFEPL-RHYL 115

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKYGMWWLLAADF-L 188
           +          L+  +AD+ D       +W       E +  L + +    W       L
Sbjct: 116 NDDSDKRKLHQLSGRIADLFDQYLVYRPEWISHWQRNELIEGLSSNQL---WQKRLWLCL 172

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
              +    +                    E+  L K     + I G +   P   + ++ 
Sbjct: 173 VEYTAQLGQSPWHRANLYQSFIDKL---RESPELAKNLPARLFICGISSLPPVYLQALNA 229

Query: 249 VANHPNGAIVLPGLDCHIPTAI----------WNTITEKSTNITSSNTTYSTHPQYSLAK 298
           +A H +  ++      +    I             +         S      H       
Sbjct: 230 IAEHTDIHLMFTNPCRYYWGDIQSSAFLARLQQRKLRHYLDKYEISRFKIEEHAANLFNA 289

Query: 299 ---------LLDFLDIKREDVKRLGNVSNE---------------MYGRSMVISKSFLPP 334
                    LL        D     +  +                +      I       
Sbjct: 290 DGEQNIANPLLASWGKLGRDNLYFISQIDATNEVSAFVENGRNNLLENLQQDILDLENHA 349

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSA 390
                            + +    V      + + E   +   L    +E+     +   
Sbjct: 350 QLGATLEEYESSQHKRPLNQLDQSVTFHSCHSAQREVEVLQDRLLALFEEDATLTPRDVI 409

Query: 391 LITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
           ++ AD +        +     +   I   IS    L           LL+          
Sbjct: 410 VMVADIDSYAPYIQAVFGNTNSSHYIPFSISDRKALQAHPILQAFIMLLDLPQSRFSTEQ 469

Query: 446 IATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRI 496
           + TL++      +F   E  LS  +  +    +R   +  ++  L        +      
Sbjct: 470 VLTLLEVSAFSARFNIDESELSLLRRWVNESGIRWGLDDDNVRSLSLPVIGQNTWQFGLS 529

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTK 555
                                +    L   +   +  L  T +  +       ++ +W  
Sbjct: 530 RMLLGYAMDSRNGPWNGVLPYDECSGLAAQLAGKLALLVDTLREWRTLLEQERTLEEWKT 589

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG----SCIKANAIEWIDIITR 611
           +    +            +   E     L+  + KIIE                 D ++ 
Sbjct: 590 VCQQLIDTC------FKVDSETEVVLALLTEQWHKIIENALTSNYQETIPLRLIRDELSV 643

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
             D E +  +    + +     +  R + F  + L G+N+G +P+N     F     +  
Sbjct: 644 CFDDEKISQRFLAGA-INFCTLMPMRSVPFKVVCLLGMNDGAYPRNVPPLGFDLMAEKIQ 702

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRL 719
              +              + +  + L  +   R   +N     S  +  L
Sbjct: 703 RGDRKRRDDDRYL-FLEALNSAAKQLYISYIGRSIRDNQECNPSVLVTEL 751


>gi|253698975|ref|YP_003020164.1| exodeoxyribonuclease V subunit gamma [Geobacter sp. M21]
 gi|251773825|gb|ACT16406.1| exodeoxyribonuclease V, gamma subunit [Geobacter sp. M21]
          Length = 1071

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 97/948 (10%), Positives = 220/948 (23%), Gaps = 106/948 (11%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS---TILPIIKSL 81
           L++          P          I V  K   + L  E     G  +    + P  K +
Sbjct: 14  LVDELERVVRAPRPAPCTPFDKELIVVQNKGMQRWLSMELAARIGVWANGEFLFPN-KFV 72

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            +V           +    P V        +   IL                  L+    
Sbjct: 73  QEVFAHVLPESPADAPLFAPEV--------MTWRILGLLRHSAGRAGFEEVAGYLADDGD 124

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
               + LA+ ++D  D         ++L   +  +    W           + W      
Sbjct: 125 GLKRMQLARRISDTFDRYTIYR--PKELLRWEQGEE-EHWQA---------QLWRALHEG 172

Query: 202 LNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                   ++  L+             +  I + G     P    +++ VA H    + L
Sbjct: 173 TGQ----KHRARLLHDFLASRKNDRSWRRRISVIGIPSLPPFHLDVLAKVAEHAEVNLFL 228

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
                     I +    +   +           +     L  +  + R+  K + +   +
Sbjct: 229 LNPCRQYWGEIVS--ERELARLEKHGQGEEQWYETGNPLLASWGKLGRDFFKAIIDDCGD 286

Query: 320 MYGRSMVISKSF---LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                          L    +D+      E     +Q     + +    +   E   +  
Sbjct: 287 HEREDSFYELPQGILLHEVQADIVELRGAEAGPRQVQAGDLSLKVHSCHSPMREVEVLYD 346

Query: 377 ALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTTLH 426
            L    D +     +   ++T D          +       R  I   I+     +    
Sbjct: 347 TLLSLFDADPLLSPRDVLVMTPDIEAYAPYISAVFDNPEEDRKRIPYSIADRSLKNEGEA 406

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF----PEKYLSRAKNALELVALRGNKNS 482
           +  L ++L           +  +++ P     F     +    R       +    +   
Sbjct: 407 ARALVAILGLCGGRYGVATVLDILESPPVARRFGLCGDDLENVRDWLRGANIRWGIDAAQ 466

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH-------ILQCITPLV 535
                +     +  +   +   + +  +       +  +   D          + +    
Sbjct: 467 RAEHGVPPFSENSWSAGLDRLLLGYAMNGDGRSFYDGILPYDDMEGGVALSFGRFLAFCE 526

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                  +       S+W       L +  L +               ++    +     
Sbjct: 527 KLFAQTGALSRPRVPSEWVPALRRILDDFILPDQEGEREFL---LLIEMAKKLGESPAVA 583

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              +   IE +        G + +     +  +     L  R + F  + L G+NEG +P
Sbjct: 584 GFEEEIGIEVVRYWVEQQLGASKRDLGFLTGNVTFCAMLPMRSIPFPVVALLGMNEGEFP 643

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIAS 713
           +      F     +      +             + +  + L  +   +   +N     S
Sbjct: 644 RRNPPQGFDLMTREPRSGDSSPRDEDRYL-FLEALLSARKRLHISYVGQSIKDNAELPPS 702

Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDW--------------------------TRKLDY 747
             +  LL      F     K                                   R    
Sbjct: 703 VLVSELLDYLERSFVAPQGKPAAEVAHHPLQPFSPKYFYRDCALFSYSRQNCEGARAKLS 762

Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPD 804
                      P PP E    T +   +   + +P     RR L +     +   ++   
Sbjct: 763 PPSPREPFLDAPLPPWEEAG-TVTLKALIDFLCNPAKELLRRRLGIRIEQGVEPLEESEP 821

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
                   + +  E++   +     +I                    +         + +
Sbjct: 822 FALDSLAKYQLEQEMVTALLRGEELDIP-YAVACARGDLPPGVCGSALFRKLGEPAQEFA 880

Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA-----DRIDL 907
              +E      S  E +    P  + +   G  + G       DR+  
Sbjct: 881 AKVVE-----VSDGEPLP---PLDIDLVLPGGRIVGRIENLRCDRMVR 920


>gi|259507243|ref|ZP_05750143.1| RecB family exonuclease [Corynebacterium efficiens YS-314]
 gi|259165186|gb|EEW49740.1| RecB family exonuclease [Corynebacterium efficiens YS-314]
          Length = 287

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 83/242 (34%), Gaps = 20/242 (8%)

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
            P P  + +P   S S        P     R I +L              +GTL H ++ 
Sbjct: 12  APAPDRKPRPLALSPSRAGDYQQCPLLYRLRAIDRLPEPKTV-----AQVKGTLVHAVLE 66

Query: 818 ELIKKRINKNT-PEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHE 871
           E+ +   ++   P +   +K        +     E +P      +      +   +   E
Sbjct: 67  EMHRLPRDQRDYPAMVKRLKPHWAQMCAEDPDLNELVPGDQLYDFLVECRTLLRGY--FE 124

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
            +     +   V +     +   G+ + GF DR+D   +G + + DYKTG  PK + +Q+
Sbjct: 125 MENPQGFDASDVEMYVDTVLP-NGVPVRGFIDRVDTAPTGEIRVVDYKTGKKPKPQWSQQ 183

Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK--KYSADELSEK 989
               Q+   A       F QI  +    L Y+++     +       +  +    +L  +
Sbjct: 184 A-QFQMLFYALVYWR-LFDQIPAQ--LRLMYLKVNDSMFLTPSREQLEYFERDLGDLWAR 239

Query: 990 SL 991
             
Sbjct: 240 IE 241


>gi|218513540|ref|ZP_03510380.1| hypothetical protein Retl8_07371 [Rhizobium etli 8C-3]
          Length = 136

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/136 (41%), Positives = 81/136 (59%)

Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
           M+ I+   F+ E LPPHID +WR  F +++ +FLE E   + +I +    +   + +E+I
Sbjct: 1   MELILTELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVRGGVELETI 60

Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
            I L G ADRID+      DI DYKTG NP    A+ L+DPQL+LEAAAL+AG+F     
Sbjct: 61  NIRLNGVADRIDITGPNAADIIDYKTGYNPSPAQARALLDPQLALEAAALRAGAFRDAGS 120

Query: 955 RKVANLFYIRLKQKFK 970
               +L Y+RL+   +
Sbjct: 121 LTPQDLLYVRLRPGNR 136


>gi|68536698|ref|YP_251403.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
           K411]
 gi|68264297|emb|CAI37785.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
           K411]
          Length = 1205

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 86/703 (12%), Positives = 204/703 (29%), Gaps = 94/703 (13%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTIL---------PIIKSLGDVV-----EEKFTA 91
            +     T++A  EL     +     +            P  + L ++       + +  
Sbjct: 70  QILGLTFTRKAAAELGERIRQRLQTLAGSAFMDQLSADDPRREVLKNIAPAVATYDSYAG 129

Query: 92  DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
           D++  Y L  P     RL+  A   ++ R+ + +    L  ++ +S     A+   L+  
Sbjct: 130 DIVREYGLLIPSEPAARLITDAERWMVARDVVINSGDSLTTQTAVSSV--IADVCALSDE 187

Query: 152 LADIIDIIETEEKKWEDLHALKNEK----------------YGMWWLLAADFLKIASKYW 195
           + + +  I   E++      L  E                 +        + LK+  K +
Sbjct: 188 MDNHLVGIAAVEQESAAAKKLLEELPKGPRSKKEFTDENTKFRDTQQYRIELLKLVQK-F 246

Query: 196 TERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVA 250
            E L E +  +             +H       +     +++     +  A   ++ ++ 
Sbjct: 247 RETLQERDLLTFGQQMSKAATLVRDHEVVGQDQRRRFRVVMLDEYQDTGHAQRVMLRSLF 306

Query: 251 NHPNGAI----VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
                       +   D       +   T  +     ++   +        +LL      
Sbjct: 307 GDGRAGEGSFSAMAVGDPMQSIYQFRGATASNLEKFRTDFPNAAGEPAEKLQLLTSWRNP 366

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
              +     VS     RS   +               ++    P       + A+   D 
Sbjct: 367 TMVLDMANRVSTWSMERSTEST-------------GRLVSELRPRPGAAEGESAVAFFDE 413

Query: 367 EREEAISIAIALRMSLDENKK--------------KSALITADRNLARRVKLELTRFGIN 412
             +E   +A  L+    ++++               +A++      A  +  +L   G+ 
Sbjct: 414 REQELDWLADKLQSQWRDHQRKLETADDPAKVKPFSAAVLVTVNKDAVPIYEKLVERGVP 473

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            D++AG  L      + + ++L  +    D +A+  L+  P  ++      L+      E
Sbjct: 474 ADMTAGPGLLDIPEVADVFAMLRVLVDPTDDVALLRLLTGP--RWNLGAADLAVLTRRAE 531

Query: 473 LVALRGNKNSYDIMDLKSLVLDRIA-TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
            +A RG   +  I D       R A        V         E    A      ++  +
Sbjct: 532 QIAKRGAGEADAIDDSVMERQRREAIELLRTPGVRDELIEEVLEAIPNATEFSVGLIDAL 591

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN----------------------VCLDEH 569
             L   +    S  G+  ++   +      ++                      V    H
Sbjct: 592 ADLTDAEEMGMSAEGSRRLAQLGRELGYLRRHSLGKNLPDLVADIEKMLGVRTEVLTRWH 651

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
           R+             + +   +   GS      +E++       DG        K +T+ 
Sbjct: 652 RRPEQAIGTSHLDKFAQIVRDVSRAGSATPKALVEYLLAAQSEEDGLDPGEVQRKDNTVQ 711

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           IL   +++ L +D + +   +   +   +      +  +++ +
Sbjct: 712 ILTVHKAKGLEWDIVAVPHASRERYGDYSQPRSESAWTIKARV 754



 Score = 72.6 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 58/238 (24%), Gaps = 30/238 (12%)

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                          L     L+       +        +       + +E   L  D   
Sbjct: 951  RPAPGATADGAPTTLAEAWDLETNLLLEEFSAMDNAELVVPLNVRMTATEAVSLRKDNQE 1010

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
               R   +   +           RGT FHN + E  K+    +  ++       ++    
Sbjct: 1011 FALRAR-RPIPLEPKPY----AKRGTAFHNWVEERYKQVSLLDEDQLPGASDATLED--- 1062

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                              +  +FL  E   +   +   V     + I        G  D 
Sbjct: 1063 -------------PYLETLKDAFLRSEWADR---QPESVEGAYSVTIGGHVFE--GRIDA 1104

Query: 905  IDLL---KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
            +       +    + D+KTG  P           QL++   A      +++     A 
Sbjct: 1105 VFHDGTDPTAGWIVVDWKTGRKPTGADMDAA-AMQLAVYRLAWAKLLSAKLGVEVPAE 1161


>gi|162451112|ref|YP_001613479.1| hypothetical protein sce2840 [Sorangium cellulosum 'So ce 56']
 gi|161161694|emb|CAN92999.1| hypothetical protein sce2840 [Sorangium cellulosum 'So ce 56']
          Length = 1045

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 102/939 (10%), Positives = 238/939 (25%), Gaps = 90/939 (9%)

Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
                +  D  P   L  P+ PA  + LA  +   +           +L AL        
Sbjct: 62  RLATRLALDALPPDRLRQPVEPAARVALAHAIDRALGAFRRAGTSPAELRALGTP----- 116

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
           + +A   +   +         ++           +R+            + I G+    P
Sbjct: 117 YAIAIAEVLDRADAALRAARLVDPRCAGFLLARALRSAGASAALPLPREVAIRGAVAWEP 176

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                +  +      A    G+   +P    +     +  +     +    P+ +     
Sbjct: 177 DDLAWVEALHAAVR-ARGGAGVTVELPALPDDGAAPVADALERRWASLEDAPEIAWVPDG 235

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
               +     K     +              +PP+   +    + +  +  ++   +D A
Sbjct: 236 GAEPLAAIAAKTPEGEARAAAAEVAAALGRGIPPERIAVVVPALDDAALEPLRAALAD-A 294

Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            + +   R  A +     R++L   +     +  ++ +       +         SA   
Sbjct: 295 GVRSSEPRGRAAASCPDGRVALALLRLAVGPVRREQAIEILRAPGVHAGAWMDRTSAAEA 354

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
              +   +     +         + I  L+    A+        +R   A    AL   +
Sbjct: 355 ERRSTDLAHRLRDVPVEVDRTGRLLIDGLISVVAARRADRRAGTARTPPAAAQEALSDAE 414

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
            +     L     D     +        +   S      A    + + + ++ L      
Sbjct: 415 LALGFSVLGGAHGDEDGDDEAWMPHALERLLASARWIGEATTRPEIVRRFLSLLDKLGFG 474

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
           +       +     + +   L+ +              E+ + L+     +        A
Sbjct: 475 EPGIEELRAALRGERRSGGALEAMGAMGQGARAARAIREQAEALARAAYDLGCEERPATA 534

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
             I           G   +    ++  + I        L  D +++ GL+   +  +   
Sbjct: 535 AEIYAELERAAAEQGAGPRGDAGRAGAVRIDVAAGFTALENDVVVVTGLDARAYGGSPGA 594

Query: 661 N-PFLSRVMQSDLNLKTA-----EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
           +   L   ++  L   +      E+   Q A       G R +    +  +++ P     
Sbjct: 595 DETLLGEALRGRLPAPSRPATGRERQAAQRAELGWALAGARRVALCYTRGDDSEPNEPHP 654

Query: 715 WLQRLLVLGGTDFFD--------------------NLKKRGQCYLDWTRKLD-------- 746
                   G     +                     L   G+   D   ++         
Sbjct: 655 LFIAAAAAGAHQRTEPASRVAPDAAPLGPRDAELIALAGGGRPAADLAERIRIERARADF 714

Query: 747 ----------------YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
                                    + +         R  + + I++ +   +A +ARR+
Sbjct: 715 FLDPRAPIDLHTGRVLVDRDPALAAQLRAAIGGAHPDRPIAVTHIERAVGCAFAAFARRV 774

Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-EINHLMKQIIDSHFEKENLP 849
           L +       +  D  +RGTL H  +    +         +    +     +      + 
Sbjct: 775 LHVRRAEDLAESADARERGTLIHRALQASFEALRELGPERDPAEQLAAARAAAEAALGVS 834

Query: 850 PHIDIIWRHLFHKISHSFLEHEEK--------IQSSIEKIFVNIPAKM------------ 889
             +  + R    K     +E   +            +                       
Sbjct: 835 APMAPLRREAVEKAIADVMEVVARTLDGDGEDASPELRFFLAERRFGAGEPPPWQPLELP 894

Query: 890 ----AIESIGIHLTGFADRIDLLKSGF-VDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
                     + + G  DR+D       V + DYKTG  P  +  ++    QL L +A  
Sbjct: 895 PLSDEEGGPSLWVDGQIDRLDRSTDQRVVRVVDYKTGKLPDAKERRR--ALQLPLYSAIA 952

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
                      +     YI ++Q+  I+      +   A
Sbjct: 953 ARAL-----GAEEVRAVYIGVRQRGLIELWPRTAEDQRA 986


>gi|23428614|gb|AAM12391.1| helicase II [Zymomonas mobilis subsp. mobilis CP4]
          Length = 777

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 94/739 (12%), Positives = 208/739 (28%), Gaps = 113/739 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E++     + G  +  +P + +   +  +                 
Sbjct: 67  SQILAVTFTNKAAREMQMRVGYLLGSFAENMPWLGTFHSIAAKM---------------- 110

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    L  +      I      W AK LA IID  +    
Sbjct: 111 -LRRHAELVGLKSDFIILDTDDQIRLLKQLIQGQGIDEKQ--WPAKQLAGIIDRWKNRGL 167

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             + +     E+  +  +    F+      + +RL+ LNA       + ++    +H   
Sbjct: 168 TPDKIA--GKEEDSLLMVKVLRFIL----AYQKRLLSLNACDFGDLLLHMLVILTQHREV 221

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I++     +  A    +  +A        +   D       W      + 
Sbjct: 222 LDSYHDRFRYIMVDEYQDTNQAQYLWLRLLAQKNRNICCV--GDDDQSIYSWRGAEVANI 279

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      P   + +L        + +     +      R                
Sbjct: 280 LRFEEDF-----PGAKIIRLEHNYRSTPQILGAASGLITHNNAR---------------- 318

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAI-SIAIA--LRMSLDENKKKSALITADR 396
                L   +   +     V +I   +  EEA   +A    LR +     K  A++   +
Sbjct: 319 -----LGKTLWTERDQGEKVKIIGVWDGAEEARQLVADVQNLRRANIPLNK-MAILIRAQ 372

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R  +       +   I  G             + L  I +  D +A   +V  P   
Sbjct: 373 FQSREFEDIFIAKNLPYRIIGGFRFYERAEIRDALAYLRVIAQPTDDLAFERIVNVPKRG 432

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G          +       +      D + L       ++                   
Sbjct: 433 IGKKAMEKLIFISKTRYSKYQAA--FLDRIPLAEAAEKLVSE------------------ 472

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                 L   I Q +  L+   +    +   +S +D T+  +        DE      L 
Sbjct: 473 ----KTLGSKITQSLGQLMNDFSEWRKSLSVVSHADVTRKML--------DESGYKVMLR 520

Query: 577 FEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
              + ++       + E    ++   +   +++ ++ ++D             + ++   
Sbjct: 521 AVNDVQSAGR-LENLTELARAMEEYDDLGSFLEHVSLVMD----HENDPIDDKITLMTMH 575

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L FD + L G  EGV+P   + +         +  L + E+    A      A   
Sbjct: 576 AAKGLEFDHVFLPGWEEGVFPSQRSLD---------EGGLNSLEEERRLAYVGITRAKKC 626

Query: 695 RHLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             + +  + R       +  SR++  L      +    L+K+   + D   +        
Sbjct: 627 CTIFHAANRRVYGQWIASTPSRFISELPDDHIEE-KSLLRKKTPIWRDIWAEDRSKNPAY 685

Query: 753 HYKRPKPFPPLEAQPRTYS 771
           +  +    PP +   R  +
Sbjct: 686 NSAKEAITPPWQLASRRGA 704


>gi|284005618|ref|YP_003391438.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
 gi|283820802|gb|ADB42639.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
          Length = 966

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 84/877 (9%), Positives = 221/877 (25%), Gaps = 120/877 (13%)

Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171
           L  L  ++   L +  +    +    +         L +N+   ++         +D+  
Sbjct: 89  LGTLHSLFLRLLEEYREYTRLKRSYRILDDFDQQFVLYRNINRFME--------IDDIEV 140

Query: 172 LKNEKYGMWWLLAADF---------------------------LKIASKYWTERLVELNA 204
           L  E     W  A+D                            L  A   + E L+E N 
Sbjct: 141 LVGEPTRPRWERASDLVRLLNRVSEEYLDPIVLASSTDIPVRVLGEAYSIYREILLEENV 200

Query: 205 SSPVGYQIA---LMRAEAEHLMKGTK--GPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                 Q     L+  + + L K  +    ++I     +     R++  +    +   V+
Sbjct: 201 LDFSVIQTEFLYLLENQPQILDKLQEKFRYLMIDEYQDTNTIQERIILLLTGPRHNLCVV 260

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       +   + ++      +          L                       
Sbjct: 261 --GDDDQGLYRFRGASIRNILEFPDHFPAEKCTVIRLETNYRSHPDIITFYNNW------ 312

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                 +    +    ++  R    +  +        + + +  + +  +    +   +R
Sbjct: 313 ------MTRMDWTGGTSTTFRYDKTIVPRTEKFHTSPAVIRVGASGSPEQYHEEVLEFIR 366

Query: 380 MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                     +L+ + +         L R   N  + A           + +      F+
Sbjct: 367 ----------SLLASGKITDLNQIAMLFRSVKNDQVLALTEFLEENGVPVFSPRSALFFE 416

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
            ++   I   +   L    F                 +               L      
Sbjct: 417 RDEVKLILGALIF-LFPNLFEALKWQDDAQLSIWDRYQ------------EWKLFFANAL 463

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
           + +        + + +  ++   + D        L                S++  + +T
Sbjct: 464 RADPAKHRDLIQWARQTAKIHAAMADSTTYAFAAL------LYQLLEFPLFSEFLNVNMT 517

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKANAIEWIDII-TRLIDGET 617
             +      +            + L ++         S ++    +++  +    I    
Sbjct: 518 DPKRDLRAAYNIALLSKILYRFEYLYNVTILTPKNQQSVLQNFFNQYLRFVYEGGIQEYE 577

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
              ++  S  +  +   +++ L F  +++G LN     +  A +     + ++       
Sbjct: 578 DFDEMAPSGCISFMTIHQAKGLEFPVVMVGSLNAVPRTQREAVD-LTPYLHKAPFEPAEE 636

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
                     +   +  ++L+   +  +       S++  ++                  
Sbjct: 637 THRFDFWRLYYTAFSRPQNLLVLTTREKQGQGRSPSKYFDQVHYSL------------PS 684

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
           +   + +LD  T            P+  +      S I    N P             + 
Sbjct: 685 WRSPSFRLDDFTFDSL-------KPVNIKHEYSFTSHILLYENCPLQYKF-----YKELK 732

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
             +        G+L H  I ++ +  +           K           L        R
Sbjct: 733 FVEVRTGGVLGGSLLHQTIEDIHRHVLRGEPHNELTDEKIKSWYDLNYNLLAKQQRSQLR 792

Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
                     +      Q+    +       +++      L G  D I+  ++G V++ D
Sbjct: 793 QAQLDALLRQILRYRDRQADKWHLIREAEVDVSLVKEDYILKGTIDLIE-GENGTVELVD 851

Query: 918 YKTGDNPK--------KETAQKLIDPQLSLEAAALKA 946
           +K+GD P         +    +    QL + A  ++ 
Sbjct: 852 FKSGDKPDVNTTDPRLRRQVNQ-YRRQLEIYAHLVEE 887


>gi|45442647|ref|NP_994186.1| exonuclease V subunit gamma [Yersinia pestis biovar Microtus str.
           91001]
 gi|108813143|ref|YP_648910.1| exonuclease V subunit gamma [Yersinia pestis Nepal516]
 gi|145598979|ref|YP_001163055.1| exonuclease V subunit gamma [Yersinia pestis Pestoides F]
 gi|149366980|ref|ZP_01889013.1| exodeoxyribonuclease V gamma chain [Yersinia pestis CA88-4125]
 gi|162421719|ref|YP_001607584.1| exonuclease V subunit gamma [Yersinia pestis Angola]
 gi|165927095|ref|ZP_02222927.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939287|ref|ZP_02227836.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011555|ref|ZP_02232453.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212675|ref|ZP_02238710.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167419896|ref|ZP_02311649.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425266|ref|ZP_02317019.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468470|ref|ZP_02333174.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis FV-1]
 gi|218928187|ref|YP_002346062.1| exonuclease V subunit gamma [Yersinia pestis CO92]
 gi|229837726|ref|ZP_04457886.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis
           Pestoides A]
 gi|229840947|ref|ZP_04461106.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843047|ref|ZP_04463197.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903586|ref|ZP_04518699.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis
           Nepal516]
 gi|294503036|ref|YP_003567098.1| exodeoxyribonuclease V gamma chain [Yersinia pestis Z176003]
 gi|45437512|gb|AAS63063.1| exodeoxyribonuclease V gamma chain [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108776791|gb|ABG19310.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Yersinia pestis
           Nepal516]
 gi|115346798|emb|CAL19684.1| exodeoxyribonuclease V gamma chain [Yersinia pestis CO92]
 gi|145210675|gb|ABP40082.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Yersinia pestis
           Pestoides F]
 gi|149290594|gb|EDM40670.1| exodeoxyribonuclease V gamma chain [Yersinia pestis CA88-4125]
 gi|162354534|gb|ABX88482.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis Angola]
 gi|165912761|gb|EDR31389.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920991|gb|EDR38215.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989503|gb|EDR41804.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205967|gb|EDR50447.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962637|gb|EDR58658.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167055666|gb|EDR65450.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229679356|gb|EEO75459.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis
           Nepal516]
 gi|229689923|gb|EEO81982.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697313|gb|EEO87360.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229704103|gb|EEO91115.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis
           Pestoides A]
 gi|262361071|gb|ACY57792.1| exodeoxyribonuclease V gamma chain [Yersinia pestis D106004]
 gi|262365314|gb|ACY61871.1| exodeoxyribonuclease V gamma chain [Yersinia pestis D182038]
 gi|294353495|gb|ADE63836.1| exodeoxyribonuclease V gamma chain [Yersinia pestis Z176003]
 gi|320014152|gb|ADV97723.1| exonuclease V subunit gamma [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 1123

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 84/766 (10%), Positives = 188/766 (24%), Gaps = 87/766 (11%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL+    ++N               + V +    Q L+ +  +     + I 
Sbjct: 11  DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANI- 60

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
             +  L           +L         S      +L  L+      L +       +  
Sbjct: 61  --VFPLPATFIWDMFTRVLPDIPKESAFSKEAMTWKLMWLLP----DLLENPLFSPMKRY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191
           LS          LA  +AD+ D            WE    ++       W      L + 
Sbjct: 115 LSDDGDRRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIEGLDDAQQWQA---LLWVE 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249
              +T +L +             +    +  +        + I G +   P   + +  +
Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIHQLLKSDVCPQGLPKRVFICGISALPPIYLQALQAL 230

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HPQYS------- 295
             H +  ++      +    I +                 +       HPQ +       
Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYTFLAKLQSRKRRHYRESIELSLFRHPQQAEQLFNTD 290

Query: 296 -----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349
                   LL        D   L +  +E+      +             +   LE+   
Sbjct: 291 GEQNLSNPLLASWGRLGRDHMYLLSQIDEIQEVHAFVDIEPDNLLHGIQHDMLELEDHAV 350

Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391
                           +      ++     + + E   +   L   L    +   +   +
Sbjct: 351 IGTTPETLARSDQKRRLDLDDRSLSFHVCHSPQREVEVLQDHLLGLLAADPELTPRDIIV 410

Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
           +  D +              +   +   IS               +LL+          +
Sbjct: 411 MVVDIDSYTPYIQAAFGNAPSERYLPFAISDRKASQAHPALHAFITLLDLPQSRFTAEQV 470

Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497
             L++ P     F   E  L R +  +    +R   +  ++ +L        +       
Sbjct: 471 LALLEVPALATKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWRFGLTR 530

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556
                               + +  L   +   +   L+     +        +S+W  +
Sbjct: 531 MLLGYAMDSTAGDWQGILPYDESSGLAAELAGQLADMLMHLSQWRQQLGQPRELSEWLPI 590

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L      ++     L   E  +    +    I              D +   +D E
Sbjct: 591 CRQLLDTFFDQDNDTEAALVLIE--QQWQKVIGYGIAAQYPDVVPLNLLRDELAARLDNE 648

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P+      F   +M   +    
Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPQGF--DLMAKKVRRGD 705

Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719
             +         E      + L  +   R   +N     S  +  L
Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 751


>gi|256826534|ref|YP_003150493.1| hypothetical protein Ccur_00780 [Cryptobacterium curtum DSM 15641]
 gi|256582677|gb|ACU93811.1| hypothetical protein Ccur_00780 [Cryptobacterium curtum DSM 15641]
          Length = 990

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 87/809 (10%), Positives = 200/809 (24%), Gaps = 69/809 (8%)

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
           +    +          ++    D  I    W  +       + +          +   L+
Sbjct: 135 SYRLWLRAHQRIEYAEMLSLLPDR-IDATHWQVLGVFFLADSLTPFEREFLGALNATLLV 193

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKS------------FLPPDTSDMRNTDILENK 348
              +    D  +      +        S +               P+  ++ +     + 
Sbjct: 194 SGSNGTLTDNSKWVVDEKKSSPSRKANSNACYGTHHVESVETSRAPELCELSHLLFQRSA 253

Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSL-----DENKKKSALITADRNLARRVK 403
                     V +  A     + +S+  A+  ++     +++     ++           
Sbjct: 254 SSKPVNASGAVRVALACGPEAQLLSVHEAILDAVKGADSEQDPSIVVVLPDPLRQFTFSA 313

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK-HPLAKFGFPEK 462
             L + GI+        L        L      +       A+A     +P A   +   
Sbjct: 314 PLLAQQGISCACQGSKLLCDIDVGRALIDACTLVDDAAAETALAADYSYNPFAGIWYATA 373

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
           + S   +       R  +    + DL     + +               LS  +  +   
Sbjct: 374 FYSDKLHR----GNRLIEQEELLCDLAGHAEEDLQGLIGLIEQDDLPQALSVLESYIVRH 429

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEG 581
                          +         L+I       +  ++   +             ++ 
Sbjct: 430 FSSQPGYAAEQFAALQYVSRVVEAALAIGKSPAQMIRHVETAQIPLAFDTDSGSQINDQI 489

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDI-ITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
            +     S+I  T   +     E   +               +    +  +   ++ L  
Sbjct: 490 DSQIKDTSQIKGTHRVLFCTLDEAAALEPASAHTIIAADMTAQSYPIVENVDAADTLLAK 549

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
           +  +           K +A        +     +        Q A  FE          T
Sbjct: 550 WGLVTTDNKMAASRQKFSAALLAARNRVVMQRTMHNGLADEEQPAALFEEVLDCYRGDPT 609

Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK----R 756
               ++    +         + G     +N     Q     T +    +  P  +     
Sbjct: 610 SRDSDDTTTRVPISLAPFTHLSGEEHLVENTLGHAQRVASETDRPIMGSITPQARSFIVL 669

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
            + +          S S+I+  +  PY  +A+R LKL       +     +RGT  H ++
Sbjct: 670 NRRYHGHTFPGMDLSASQIESYLECPYQWFAKRRLKL---ESLDEGFGPAERGTFIHAVL 726

Query: 817 TELIKKRINK--------NTPEINHLMKQIIDSHFEKENLPPHI-----------DIIWR 857
                +   +           +   +M+ +     E++    H+           +   R
Sbjct: 727 ESFYLRFQAEVQPKVTPSTLGQAREVMQAVFSQVAERQFTDRHLVGNRYVPINAWEERQR 786

Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES--IGIHLTGFADRIDLLKSGFVDI 915
                    +LE E ++  S E                 G +L G  DRID  ++G V I
Sbjct: 787 DKVLDQLLDYLEFECRLLPSFEPWKFEWAYGEDTPYSYAGCNLVGRIDRIDRDRAGQVVI 846

Query: 916 TDYKTG----------DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR- 964
            DYK+            + +    +     Q  + A A++           +A + Y+  
Sbjct: 847 IDYKSSLSSAYRLHADSSDESSAFELPAKMQALIYAKAVR-----DTLGCPIAAILYVNP 901

Query: 965 LKQKFKIDCITNDKKKYSADELSEKSLKN 993
           L    +                   +   
Sbjct: 902 LDASIQGAWDAGQIGLEELPFAPADARAG 930


>gi|22127042|ref|NP_670465.1| exonuclease V subunit gamma [Yersinia pestis KIM 10]
 gi|270487369|ref|ZP_06204443.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis KIM D27]
 gi|21960092|gb|AAM86716.1|AE013917_4 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia pestis KIM 10]
 gi|270335873|gb|EFA46650.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis KIM D27]
          Length = 1123

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 84/766 (10%), Positives = 188/766 (24%), Gaps = 87/766 (11%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL+    ++N               + V +    Q L+ +  +     + I 
Sbjct: 11  DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANI- 60

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
             +  L           +L         S      +L  L+      L +       +  
Sbjct: 61  --VFPLPATFIWDMFTRVLPDIPKESAFSKEAMTWKLMWLLP----DLLENPLFSPMKRY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191
           LS          LA  +AD+ D            WE    ++       W      L + 
Sbjct: 115 LSDDGDRRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIEGLDDAQQWQA---LLWVE 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249
              +T +L +             +    +  +        + I G +   P   + +  +
Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIHQLLKSDVCPQGLPKRVFICGISALPPIYLQALQAL 230

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HPQYS------- 295
             H +  ++      +    I +                 +       HPQ +       
Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYTFLAKLQSRKRRHYRESIELSLFRHPQQAEQLFNTD 290

Query: 296 -----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349
                   LL        D   L +  +E+      +             +   LE+   
Sbjct: 291 GEQNLSNPLLASWGRLGRDHMYLLSQIDEIQEVHAFVDIEPDNLLHGIQHDMLELEDHAV 350

Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391
                           +      ++     + + E   +   L   L    +   +   +
Sbjct: 351 IGTTPETLARSDQKRRLDLDDRSLSFHVCHSPQREVEVLQDHLLGLLAADPELTPRDIIV 410

Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
           +  D +              +   +   IS               +LL+          +
Sbjct: 411 MVVDIDSYTPYIQAAFGNAPSERYLPFAISDRKASQAHPALHAFITLLDLPQSRFTAEQV 470

Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497
             L++ P     F   E  L R +  +    +R   +  ++ +L        +       
Sbjct: 471 LALLEVPALATKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWRFGLTR 530

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556
                               + +  L   +   +   L+     +        +S+W  +
Sbjct: 531 MLLGYAMDSTAGDWQGILPYDESSGLAAELAGQLADMLMHLSQWRQQLGQPRELSEWLPI 590

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L      ++     L   E  +    +    I              D +   +D E
Sbjct: 591 CRQLLDTFFDQDNDTEAALVLIE--QQWQKVIGYGIAAQYPDVVPLNLLRDELAARLDNE 648

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P+      F   +M   +    
Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPQGF--DLMAKKVRRGD 705

Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719
             +         E      + L  +   R   +N     S  +  L
Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 751


>gi|310819562|ref|YP_003951920.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|309392634|gb|ADO70093.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
          Length = 781

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 82/723 (11%), Positives = 194/723 (26%), Gaps = 81/723 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R   +++ G ++  L ++ +           +             
Sbjct: 65  RILAVTFTNKAAREMRERLVQLLGAQAHEL-VVSTFHSSAAMILRREAEAV--------G 115

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           + R   +             + +      P   P    + I   KN A + D ++     
Sbjct: 116 LTRSFVIYDDGDQLNIVKRAMRE--ARVEPSMQPREILHRIDQEKNAARLPDAMQ---VD 170

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            +DL  +                K   + +   L   NA       + L+    +H    
Sbjct: 171 ADDLRGMVV--------------KRTYQTYQRLLRAANAVDFGDLLLLLVSLFRDHPEVL 216

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     + P    L+  +A  P GA ++   D       W   +  +  
Sbjct: 217 EKYRRRFSHVLVDEFQDTNPVQYELLRLLA-PPPGANLVVVGDDDQSIYRWRGASVDNIL 275

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
              +     T+P   + KL       +  ++    V ++   R                 
Sbjct: 276 GFPN-----TYPGAKVVKLEQNYRSDQAILEAAHAVISKNRRRMAK-------------- 316

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRN 397
                  K+ + ++    + L+   +ER EA  +A  +     E        A+      
Sbjct: 317 -------KLWSERQRGEHLQLLILRDERAEAQEVARQIHALQREGFIKYSGMAVFYRVNA 369

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    +   + +G             + L  +        +  ++  P    
Sbjct: 370 QSRVLEEALRLARVPYTLVSGRSFYDRAEVRDAAAYLRLMVNPRSDADLLRIINTPARGI 429

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G             + ++L       + +   +    R     +             +D 
Sbjct: 430 GDTTVERLTTHADHQGISLYEAIAQPEQIPALNSAAVRRLAGVHTLLASLNSFAQGAKDA 489

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             AV  +    + +  L    +++     +L+ ++  +  +   Q   L+          
Sbjct: 490 ASAVDEMLRETRLVESLTAEGSDE-----SLTRAENLREFLGAAQEFDLNRAAASVAAAA 544

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
               +    L + +              +      I              + ++    ++
Sbjct: 545 AVPAEPEEPLPADLDAAPLSADVPP---LQSFLEQISLVGDADAEVGEGKVALMTLHAAK 601

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L FD + L G+ + V+P + A         +         +        F  A     +
Sbjct: 602 GLEFDAVFLTGMEDNVFPHSRALVGEDPDEGEEMA------EERRLCYVGFTRARRRLFV 655

Query: 698 IY--TRSLRENNIPTIASRWLQRLLV--LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
                RSL         SR+L+ +     G         +     +   R+       P 
Sbjct: 656 SLAQCRSLFGELRYNPPSRFLRDVPPTLFGIDPSVQEAPRPVAAPVAPRRRSYEDDDSPR 715

Query: 754 YKR 756
             R
Sbjct: 716 IDR 718


>gi|289208792|ref|YP_003460858.1| exodeoxyribonuclease V subunit gamma [Thioalkalivibrio sp. K90mix]
 gi|288944423|gb|ADC72122.1| exodeoxyribonuclease V, gamma subunit [Thioalkalivibrio sp. K90mix]
          Length = 1173

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 111/992 (11%), Positives = 231/992 (23%), Gaps = 126/992 (12%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG--- 82
            L   +VE  +  PL P  L + T+ V +    Q LR               I  +L    
Sbjct: 22   LRALVVEWMQRAPLGP--LENETLLVQSNGMAQWLRYALAAHPDADPPGCGIAAALDMQL 79

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK----DLYPESPLSL 138
                       +L     P  S   +   + RL+ +    L             +     
Sbjct: 80   PSRFVWSAYRAVLGPEAVPLESPYAKRPLIWRLMRLLPECLARPEFAPLARFLADDDPRD 139

Query: 139  PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG------------MWWLLAAD 186
                     LA+ LAD+ D  +     W    A   +                 W  A  
Sbjct: 140  GGDLRKRHQLAERLADLFDQYQVYRADWLTSWATGRDVLRDARGRETPLAEGDRWQAAL- 198

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
              ++  +   E   + + ++        ++  +E         +I+ G +         +
Sbjct: 199  -WRLLREDIGEGPADTSRATVHARYREAVQGLSERPPGLP-RRLIVFGISSMPGQILEAL 256

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTIT--------EKSTNITSSNTTYSTHPQYSLAK 298
              +A      + +     H    I             +       S    +   Q++   
Sbjct: 257  EGLAGVCQILVCVHNPCEHYWADIVADKDLLRATRQRQARKAGMPSVLDDAELHQHAHPL 316

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL------------- 345
            L  +    R+ +  L    +     +++ + ++   D  +    D L             
Sbjct: 317  LAAWGKQGRDYIGLLDEHDDPTAYDAVLRTLAWKRVDYFEPHGGDCLLHQLQDDIRELRP 376

Query: 346  ----ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRN 397
                    P +      +    A     E   +   L    D       +   ++  D +
Sbjct: 377  LGETRESWPAVAPDDDSIQFHVAHGPLREVEILHDRLLAHFDADPDLRPRDVIVMVPDID 436

Query: 398  LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
                    +           I   +S   P         L  LL+          +  L+
Sbjct: 437  AYAPHIEAVFGQLPPDDPRYIPYTLSDQGPRGRDPVLIALERLLSLPESRMGVAEVLDLL 496

Query: 451  KHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKN 501
              P  +  F   E+ L+      E   +R   ++     L       ++     +     
Sbjct: 497  DVPALRRRFGIAEEDLTTLHRWAEGAGVRWGLDAEQRAGLGLPEGLEQNTWRFGLRRMLL 556

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTC 560
                    +    E  +    +   +L  +  L+T  T   +      +  +W       
Sbjct: 557  GYASGGAGAWQGLEPFDEIGGIEAALLGPMDDLITALTQTWDWLRHAHTPGEWNTRLREL 616

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
            L      E             + L    +   E             +      +   +  
Sbjct: 617  LDTFFAGETDAELFT-LGRLREALDQWQADCAEAELDDPLPLGVVREQWLASQEDSGLGQ 675

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK-NPFLSRVMQSDLNLKTAEK 679
            +     ++     +  R + F  + L G+N+G +P++    +  L R      +    E 
Sbjct: 676  RFLAG-SVNFGTLMPMRAIPFRIVCLLGMNDGDYPRSPTPVDFDLMRRDYRPGDRSRRED 734

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL------VLGGTDFFDNLKK 733
                       A    H+ +      +N     S  + +L                    
Sbjct: 735  DRYLFLEALLSARRQLHVSWVGHSARDNESQPPSVLVAQLRDHLAAGWRLQGAEEAGAPS 794

Query: 734  RGQCYLD-------------------------------WTRKLDYTTKQPHYKRPKPFPP 762
            R    LD                               W                 P P 
Sbjct: 795  RDDPLLDHLTTEHTLQPFSPANFPPDPAQARYFTYAREWEAVHHGDETPAPGAIELPPPD 854

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819
                 R      + + + DP   + R  L +         +        G     +   L
Sbjct: 855  AADDERVLGPDALMRFLRDPAEAFFRHRLGVVFDREEAPSEDLEPFALAGLEQWQVREAL 914

Query: 820  IKKRINKNTP-EINHLMKQIIDSHFEKENLPPHIDIIWRHL----------FHKISHSFL 868
            +   ++     E    + +   +  ++    P                     +I     
Sbjct: 915  VAAALDHGEDPEAWGPVLEAEAARLQRTGALPLGAAGELERDAMIAESGRLLERIGLRLA 974

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
               E++                +E  G  L G
Sbjct: 975  AWPERLPP--VPAVRLGQGGWTLEGAGPALRG 1004


>gi|284051928|ref|ZP_06382138.1| hypothetical protein AplaP_10696 [Arthrospira platensis str.
           Paraca]
          Length = 677

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 85/686 (12%), Positives = 174/686 (25%), Gaps = 142/686 (20%)

Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
                   L   +  + + L +             +  +          P++I G     
Sbjct: 103 HNSRRIRDLAQVTNLYKQELFKQGYIDQDELFWQAINFQ------PKPQPLLIYGYFQPQ 156

Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
           P     ++ VA   +   VLP          +    E    + S     +         L
Sbjct: 157 PDQVEFINLVAG-EDSIWVLPTG----KAEFFAKNREAIAYLESEEWQVNYQENNDNFSL 211

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            + L     D + +                                           ++V
Sbjct: 212 GEKLQNCFVDKEEIT------------------------------------------NNV 229

Query: 360 ALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELT-RFGINIDIS 416
                 N   E   +   ++  + E  + ++  L+T D      + L++   + + + + 
Sbjct: 230 QCHIYSNLEAEVRGVLSQVKQLMIEGISAREIVLVTQDEKTYAPLLLDMAWEYQLPLRLF 289

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
             IPL      S +  L+  I     F + A L+ HPLA      +    A+        
Sbjct: 290 YKIPLRNIRLGSWIALLIEVIENNFPFESTAKLLHHPLA-QYLTYQQWLEARQKRPHNLA 348

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
              +   ++  LK                          + +     VDHI Q       
Sbjct: 349 EWQELGLNLSLLK------------------------FPESDTRQNWVDHIKQVFKFFDI 384

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
            K +       ++ ++     V   +      +R+       E    L            
Sbjct: 385 RKNSSQWPREIVAFNELEAAWVELSKPDGDRLNRQEFCQDILEIISKLKVPMQ------- 437

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                                          + +   L  +  ++  + L G  EG+ P 
Sbjct: 438 --------------------------PGKGGIEVHTPLSLQGASYPHVFLIGFQEGILPP 471

Query: 657 NTAKNPFLSRVMQSDLN-----LKTAEKYIGQAAHDFEMANGTRHLIYT--RSLRENNIP 709
               +P L       L+     L+TA     +    F        +  T   + +    P
Sbjct: 472 AIENDPVLDFYESRRLSQLGITLETAIDIAQRNELCFYELLRIPTISLTFSCAEQHYKKP 531

Query: 710 TIASRWLQRLLVLGGTDFF---DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
            I S +  RL +           ++++  + YL    KL          +          
Sbjct: 532 LIPSPYATRLGLEMTPPPLLNLASIEEARRYYLQQPEKLSNDVLVNDIIKNWQVEQRRES 591

Query: 767 PRT------------------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
             +                  +S S++  L   P+  +A  +L L      + +   +  
Sbjct: 592 GESPDEYDGVIGVGVDYENRIFSASQLLALGQCPFKWFATYLLGLKEPSEAEAEITGSLG 651

Query: 809 GTLFHNIITELIKKRINKNTPEINHL 834
           G L+H  +  L+    N+        
Sbjct: 652 GRLYHRCLELLLTDIKNQTDLRRLER 677


>gi|158312780|ref|YP_001505288.1| UvrD/REP helicase [Frankia sp. EAN1pec]
 gi|158108185|gb|ABW10382.1| UvrD/REP helicase [Frankia sp. EAN1pec]
          Length = 1088

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 85/876 (9%), Positives = 214/876 (24%), Gaps = 109/876 (12%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGST 236
                  L      +       +            R      E     +   G +++    
Sbjct: 228  ARGRRELAGLVADYRAARRGRDVLDFGDQVTFAARLARYSPEVGAAERTRAGVVLLDEYQ 287

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
             +  A   +++ +     G  V    D       W   +  + +    +   +     + 
Sbjct: 288  DTSVAQRTMLAGLFG--GGHPVTAVGDPCQAIYGWRGASVANLDNFPDHFPCADGTPSAR 345

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              L          +     V+  +  R  V+         +  R    L           
Sbjct: 346  YLLSVNQRSGGRLLTLANAVAAPLRARHHVVELRPRADVVAAGRTLVALHE--------- 396

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINID 414
                     +  +E   +A  L   +   ++    A++   R+  R +   LT  G+ ++
Sbjct: 397  ---------SWAQEVTWVAARLAELVAAGERPGNMAVLVRARSDVRALHTALTAAGLPVE 447

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
            +     L      + + ++L  +       A+  L+  P  + G  +      +    L 
Sbjct: 448  VVGLAGLLDLPEVADVVAVLEVLDSPVANAALVRLLTGPRVRLGPRDLAALGRRARALLH 507

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                   +    D     L       +   V      L++  +E++    +   +    L
Sbjct: 508  TTGTTAPTAAGGDGDGSALAEAVAGVDPCDVVALADALTDPGEEISAQGRERAARLGAEL 567

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
               +   +   G L +      T+     +             E     L +        
Sbjct: 568  AALR--AHVGDGLLDLLHRVISTIGLDVELAASPRAVAAR-RRENLASFLDAAADFDDPD 624

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
            G     + + ++        G  +      +  + ++    ++ L ++ + +  L+ GV+
Sbjct: 625  GPNSLTSFLGFLRAAREHERGLDI-TGPSGADAVALMTMHRAKGLEWEVVAVPNLSRGVF 683

Query: 655  PK-------NTAKNPFLSRVMQSDLNLKTAEKYIGQAAH------------------DFE 689
            P         T      + +      L + E    +AA                    + 
Sbjct: 684  PDLTVRDRWPTTTGVLPTPLRGDAAELPSYELDDSKAALEAYTEDCREYQEREERRLAYV 743

Query: 690  MANGTRHLIY---TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                 + ++                 S +L  L                +        L 
Sbjct: 744  AFTRAKSVLLGSGHWWGPTQRTRRGPSVFLTELHDHAAEGNGRVDVWTSEPERGGNPALA 803

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP--------- 797
               +       +P      +      +E   +I    A  A     +             
Sbjct: 804  VPAEFAWPAPYEPVAFARRREAAAGVAEALAMIRSGQAPPADEPGGMTAREQALLAELDR 863

Query: 798  -------------------HFKKDPDRTDRGTLFHNIIT---ELIKKRINKNTPEINH-- 833
                                       ++   +  + +    +L +    +  P+     
Sbjct: 864  EAALLLAEERMARAPFRDVPIPASLTASEIVRMRADPVEFARDLARPVPRRPVPQARRGT 923

Query: 834  LMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
                 ++  F++      E+L    D       H +S            +     +  P 
Sbjct: 924  RFHAWVEEMFDQRPLIDVEDLADAADAAVLTDDHDLSGLQAAFLASPYGARRPFALEAPF 983

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            ++ I    +   G  D +  L  G  ++ D+KTG        +     QL++   A    
Sbjct: 984  EVMIGGRAV--RGRIDAVYELGGGRWEVVDWKTGS-------EAADPVQLAVYRVAWAR- 1033

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
                +    V   ++     +     +  + +  + 
Sbjct: 1034 -VRGVAVADVDAAYFYVASGQVVRPPLLGEDEITAL 1068


>gi|47716791|gb|AAT37573.1| salt tolerance-related rstW10 [Sinorhizobium meliloti]
          Length = 181

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 78/165 (47%), Positives = 105/165 (63%), Gaps = 1/165 (0%)

Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
           ++A+  +W DI+  L   E VKP+  +   +FI G LESRL + D ++LGG+NEG WP  
Sbjct: 1   MEADGPQWCDILEALAASEAVKPRSMRHPRVFIFGALESRLQSVDLVVLGGINEGTWPGQ 60

Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
           T+ +PFLSR M++ + L+  E+ IGQ AHDF+MA GTR LI +RS+R+ + PT+ASRWLQ
Sbjct: 61  TSNDPFLSRTMKAGIGLEPPERRIGQLAHDFQMACGTRRLILSRSMRQGSAPTVASRWLQ 120

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLD-YTTKQPHYKRPKPFP 761
           RL  LGG      LK  G  YL W R LD         +RP+P P
Sbjct: 121 RLQALGGERLTALLKANGADYLHWMRILDQRRASXRCXERPEPKP 165


>gi|297626182|ref|YP_003687945.1| UvrD/REP helicase / ATP-dependent DNA helicase [Propionibacterium
            freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921947|emb|CBL56507.1| UvrD/REP helicase / ATP-dependent DNA helicase [Propionibacterium
            freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 1118

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 104/1047 (9%), Positives = 245/1047 (23%), Gaps = 143/1047 (13%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV----VEEKFTADLLLSYNLNP 101
             V     T++A  EL +           I        +       + F   L+  +    
Sbjct: 66   QVLGLTFTRKAAAELSNRVTTALSGSGIIDAAALENSEAQTITTYDSFAGQLVSEHAPRI 125

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             +   +  L  A    +    +      L      +        + L   +   +  +  
Sbjct: 126  GIDPAEHRLTDATRYRLAAQVVAANEFPLVALGEWNDRRLIGALLGLDTMMTQHM--VTG 183

Query: 162  EEKKWEDLHALKNEKYGMWWLLA---------------ADFLKIASKYWTERLVELNASS 206
            +  +      +        W  A                + L +  + +      L    
Sbjct: 184  QRIEEFTADYVGGLDEAPLWRGAPYRAVVDAERVAAERLELLGLV-ESYRRAKDRLGWVE 242

Query: 207  PVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHP-----NGA 256
                                  +     +++     +  A A L++T+ + P      G 
Sbjct: 243  FADLMAQAATIAERAPEVSTMLREQYRVLLLDEYQDTSSAQATLLTTLFSGPTVAEGRGH 302

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
             V    D +     W      +     ++   +     +   L        E    L   
Sbjct: 303  PVTAVGDPYQSIYGWRGAAASNIAEFPTSFPKADGTAANAYSLRVNRRSGPEI---LDGA 359

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
            +    G     +   LP     +      E          + V      +  EE   IA 
Sbjct: 360  NVVAQGLQSDPAMPHLPGVDFTLHAAPGQEP---------ATVTTRHFTSSDEELDWIAD 410

Query: 377  AL-RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
             +      E     A++         +   L+   +  +I     L      S + + L 
Sbjct: 411  DIAARGALEGYAGIAVLVRRNATIEPLFRRLSARDVPTEIVGLAGLFRLAVISEIVATLR 470

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLS-RAKNALELVALRGNKNSYDIMDLKSLVLD 494
             +    D  A+  L+     + G P+      A N L  V    +++             
Sbjct: 471  LLDDDTDNPALVQLLSSRRWQIGPPDLAALGEAVNRLNAVRSDPSRDQGGATPAADPPAS 530

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
              A                 +  +L    +  +          +  +     +  +    
Sbjct: 531  LRAELARQQEQAGRPMACLMDVLDLPCPGLSQLGSSRLGRFVAEFRELRRHVSEPLPGLV 590

Query: 555  KLTVTCLQNVCL--DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
            +  V  +        +          +  + L  +       G+   +  + +++ +   
Sbjct: 591  RRIVAAMNLGVELLADPGTYSQHMGAQVARFLEVVGDFTDLDGTARLSGFLSYVESVLD- 649

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF------LSR 666
             +    +       ++ +L    ++ L +DT+ L  L EG +P     + +      L  
Sbjct: 650  EEDGMEQALPTADDSVSLLSVHRAKGLEWDTVYLPTLVEGTFPATVRGDNWTTLARLLPS 709

Query: 667  VMQSDLN------------------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
             ++ D                       +     +    +      R  +   +      
Sbjct: 710  PLRGDAGSIPQLGETTKAGLQAFGTDLRSAGQFAEDRLAYVAITRARRHLVATTHVWEPQ 769

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK---------- 758
               AS   +   VL      D  ++      +    +  T   P    P           
Sbjct: 770  RKTASHTSEYFRVLAQISGGDLPEQPAPDADNPVAAVPATAVWPRPADPDREELVETAAG 829

Query: 759  -----PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                                E+   +    ++  ++  +              ++    H
Sbjct: 830  TVQGLIRRLGPGAGGDPGIGELPAQLAGELSLDEQQAYQEWQAEAQLLVRAAREQARDAH 889

Query: 814  NII-----------------TELIKKRINKNTPEIN------HLMKQIIDSHFEK----- 845
             ++                  +     +       +            ++  F       
Sbjct: 890  RVVPVESLSASALILSQAEPEQFAANLVRPMPRRASGGAGVGTRFHDWLEQRFRAGSGLL 949

Query: 846  -------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                   + LP  +D   +     +   F   EE   + +    V  P  + + S    +
Sbjct: 950  VGDDESSDELPARMDASSQRRLEILQRRF---EEGPYADLTPYRVEAPFILVLGSR--QV 1004

Query: 899  TGFADRIDLLKS---GFVDITDYKTGDNPKKETAQKLIDP-QLSLEAAALKAGSFSQIDC 954
             G  D +  L         + D+KT             DP QL+L   A      S ++ 
Sbjct: 1005 RGRIDAVYRLPGSGPHRFQVVDWKT--------FDGPADPLQLALYRLAWAD--VSGVEP 1054

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKY 981
             +V +  +  +             +  
Sbjct: 1055 DEV-DAVFCHVMSGRVERPTGLPGRDE 1080


>gi|320457795|dbj|BAJ68416.1| putative ATP-dependent nuclease subunit B [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 1098

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 106/856 (12%), Positives = 228/856 (26%), Gaps = 162/856 (18%)

Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
           I+      + A   L            VL  L   +   +    T       +       
Sbjct: 137 IVELHNDGVSAEEVLALAAHQSNARLSVLGSLLQLVEQRLGKRYTFPGAAHETICAWAQR 196

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
           H       L  F  +   +++ +  ++  ++   MV + S      +  R  D   N + 
Sbjct: 197 HGSNRWFYLYGFAHLNASEMRIVHTLAQYVHLTVMVGAGSDPDYLEALQRRDDGNRNTLS 256

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDE-----NKKKSALITADRNLARRVKLE 405
           +I    +  ++    +   E    A +++  + +                 +   ++  E
Sbjct: 257 SIFASSASTSVCAMPDTTAEVRYAAASIKKFIADNPEISYGDVLVTSRDLGSYQAQIASE 316

Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
            T  GI I+I+A   +     +  +  LL++        +I  +++  +           
Sbjct: 317 FTYQGIPINIAASSTMLDHPFADAILGLLDSATYELQPQSILRILRSGIFSRYLN----- 371

Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                                    L    I   +N  +  +  +   + D   A  L  
Sbjct: 372 -------------------------LTPTAIDDIENQLNSNNPATVWIDTDIPFAAHL-Q 405

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
            I   I         + S     ++           Q +          +    +     
Sbjct: 406 KIRSLIQQAADVFRPRPSATVREALGGMVGFLTEYAQTI-EGSAPVWTVIMNAFDDMVQQ 464

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                  E           +   +   +  +++  +   +S + +L      L  +  +I
Sbjct: 465 LGNDYFAEYVG-------IFARNLASTLAAQSIDSRPVSASAVDVLPMSSP-LHPYRYVI 516

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNL----------------KTAEKYIGQAAHDF- 688
           + G +E   P    +   L    + DL+                  T E+  GQ    F 
Sbjct: 517 VLGCSESQLPAIPHETGLLDDGERLDLSQFLTSQGKTLEAWNVLSGTVERRSGQEPLWFN 576

Query: 689 -EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
             +A+ T+ L  T      N     S ++ +     GT     +    +  +        
Sbjct: 577 GVVASATQQLSMTYPKSLRNAAQACSPYISQWET--GTSDTSEIIGASKRAVPTVETEYR 634

Query: 748 TTKQPHYKRPKPFPPLEAQPRT--------------YSFSEIKQLINDPYAVYARRILKL 793
              +    R    P    +                  S S I+    +PY  + +  LK+
Sbjct: 635 PLDRELAYRLFTRPDYVHRVYRTHGADPSISTRVFNASVSAIETYYRNPYEYFLKYGLKV 694

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKR--------------INKNTPEINHLMKQ-- 837
           +    F    D    GT +H ++   +                      P++  L+    
Sbjct: 695 NVANAF--AFDAALEGTFYHAVLEHAVNAWIERHKNERDLNGLPPQPTAPDMQELIADYS 752

Query: 838 ----------IIDSHFEKENLPPH--IDIIWRHLFHKISHSFLEHEEKIQSS------IE 879
                     +++     E L     + +I R L   +    ++   + ++       + 
Sbjct: 753 RLDRGCNQWTVLNEDPRMEVLRSSNRMRMIHRQLVDTLMDFAVDAAAQREALSSAQTMLT 812

Query: 880 KIFVNIPAKMAIESIG-----------------------IHLTGFADRIDL--------L 908
              V         + G                       + + G  DRID          
Sbjct: 813 PTCVEQVFGNVGGTTGAWQSPYSGEQLIGRARDKEIPVALRINGKVDRIDTVIRDTNISR 872

Query: 909 KSGFVDITDYKTGD-----NPKKET------AQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
           +S  + + DYK+        P +             + QL   A+A +  S        V
Sbjct: 873 ESAGIVVLDYKSSARTLFGKPSRNDGGRASNVYYGHELQLFTYASAAQHNS-----GMPV 927

Query: 958 ANLFYIRLKQKFKIDC 973
           A +F++ +K    I  
Sbjct: 928 AGMFFLPIKPSATIRE 943


>gi|299143271|ref|ZP_07036351.1| hypothetical protein HMPREF0629_00117 [Peptoniphilus sp. oral taxon
            386 str. F0131]
 gi|298517756|gb|EFI41495.1| hypothetical protein HMPREF0629_00117 [Peptoniphilus sp. oral taxon
            386 str. F0131]
          Length = 904

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 87/245 (35%), Gaps = 11/245 (4%)

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
             R +  ++    +  PY     RILK++ +   +KD    D G ++H+I+    KK  N+
Sbjct: 648  RRGFKVTDFDLYVKSPYTFLFERILKIEEMLRRQKDTYHIDIGNIYHHILERYFKKYPNE 707

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK---ISHSFLEHEEKIQSSIEKIFV 883
                +   + +      ++  +      +          I  +F+E +  ++     +  
Sbjct: 708  LNETMLKAIIK--SELIDELPVSGKYTALDSAKVDGIFSILKNFIELDLSLRDDFIPVGF 765

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY-KTG-DNPKKETAQKLIDPQLSLEA 941
             +P  + ++     + G  DR+D     +  + DY K+    P ++        Q  +  
Sbjct: 766  EVPINIKLD--KYQINGRIDRVDRKGD-YKILIDYKKSNFGVPTQKDMANKEAFQFPIYI 822

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
             A    S  +     + +  Y    +  K        K  + +   ++  + +I +   +
Sbjct: 823  MAEDKCSIVEAKYGVIKSAEYKSALRDEKYFG-RKMMKIENFEFFIDELKQEVIRLCNEI 881

Query: 1002 QNGEQ 1006
             NG  
Sbjct: 882  YNGNF 886


>gi|51597342|ref|YP_071533.1| exonuclease V subunit gamma [Yersinia pseudotuberculosis IP 32953]
 gi|153950856|ref|YP_001399973.1| exonuclease V subunit gamma [Yersinia pseudotuberculosis IP 31758]
 gi|186896449|ref|YP_001873561.1| exonuclease V subunit gamma [Yersinia pseudotuberculosis PB1/+]
 gi|51590624|emb|CAH22265.1| exodeoxyribonuclease V gamma chain [Yersinia pseudotuberculosis IP
           32953]
 gi|152962351|gb|ABS49812.1| exodeoxyribonuclease V, gamma subunit [Yersinia pseudotuberculosis
           IP 31758]
 gi|186699475|gb|ACC90104.1| exodeoxyribonuclease V, gamma subunit [Yersinia pseudotuberculosis
           PB1/+]
          Length = 1123

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 85/766 (11%), Positives = 189/766 (24%), Gaps = 87/766 (11%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL+    ++N               + V +    Q L+ +  +     + I 
Sbjct: 11  DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANI- 60

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
             +  L           +L         S      +L  L+      L +       +  
Sbjct: 61  --VFPLPATFIWDMFTRVLPDIPKESAFSKEAMTWKLMWLLP----DLLENPLFSPMKRY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191
           LS          LA  +AD+ D            WE    ++       W      L + 
Sbjct: 115 LSDDGDRRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIEGLDDAQQWQA---LLWVE 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249
              +T +L +             +    +  +        + I G +   P   + +  +
Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIHQLLKSDVCPQGLPKRVFICGISALPPIYLQALQAL 230

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HPQYS------- 295
             H +  ++      +    I +                 +       HPQ +       
Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYRESIELSLFRHPQQAEQLFNTD 290

Query: 296 -----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349
                   LL        D   L +  +E+      +             +   LE+   
Sbjct: 291 GEQNLSNPLLASWGRLGRDHMYLLSQIDEIQEVHAFVDIEPDNLLHGIQHDMLELEDHAV 350

Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391
                           +      ++     + + E   +   L   L    +   +   +
Sbjct: 351 IGTTPETLARSDQKRRLDLDDRSLSFHACHSRQREVEVLQDHLLGLLAADPELTPRDIIV 410

Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
           + AD +              +   +   IS               +LL+          +
Sbjct: 411 MVADIDSYTPYIQAAFGNAPSERYLPFAISDRKASQAHPALHAFITLLDLPQSRFTAEQV 470

Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497
             L++ P     F   E  L R +  +    +R   +  ++ +L        +       
Sbjct: 471 LALLEVPALATKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWRFGLTR 530

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556
                               + +  L   +   +   L+     +        +S+W  +
Sbjct: 531 MLLGYAMDSTAGDWQGILPYDESSGLAAELAGQLADMLMHLSQWRQQLGQPRELSEWLPI 590

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L      ++     L   E  +    +    I              D +   +D E
Sbjct: 591 CRQLLDTFFDQDNDTEAALVLIE--QQWQKVIGYGIAAQYPDVVPLNLLRDELAARLDNE 648

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P+      F   +M   +    
Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPQGF--DLMAKKVRRGD 705

Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719
             +         E      + L  +   R   +N     S  +  L
Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 751


>gi|307328515|ref|ZP_07607689.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
 gi|306885783|gb|EFN16795.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
          Length = 1232

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 86/834 (10%), Positives = 191/834 (22%), Gaps = 108/834 (12%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKK--------------STILPIIKSLGDVVEEKFTA 91
            V     T +A  EL                         +   P+I +        F  
Sbjct: 75  RVLGLTFTNKAAGELAERVRRALVTAGIVDQDPDPGATEEAAGEPVIST-----YHAFAG 129

Query: 92  DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
            LL  + L   +    RLL  A    +    L           P   P        L  +
Sbjct: 130 QLLKDHGLRVGLEPSARLLADATRFQLAARVLRSA--------PGPYPALTRPFSDLVTD 181

Query: 152 LADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYWT 196
           L  +   +       E L A   E                       A   L    + + 
Sbjct: 182 LLALDAELAEHLVPAERLRAYDTELLRTLEGARLTNEALRKVPEAARARQELLGLVEAYR 241

Query: 197 ERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
           E     +              AL   E   +++     +++     +  A   L+S +  
Sbjct: 242 EEKRRRDLLDFGDQIAHSATLALDHPEVGRILREQFAVVLLDEYQDTSVAQRLLLSGLFG 301

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
              G  V    D       W   +  + +    +  ++ +       L            
Sbjct: 302 GGTGHPVTAVGDPCQAIYGWRGASVANLDDFPEHFRHADNSPARRFAL------------ 349

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                S        ++  +          +  +   +     +    V         EE 
Sbjct: 350 -----SENRRSGGRLLDLANGLAAPLRAMHEGVEALRPAPGAERDGAVRCALLPTHAEEL 404

Query: 372 ISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
             +A ++   +       + A++        +++  L    I +++     L      + 
Sbjct: 405 AWLADSIAHLVRTGTPPGEIAVLCRTAGDFAQIQGALVERDIPVEVVGLSGLLHLPEVAD 464

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-RAKNALELVALRGNKNSYDIMDL 488
           L ++   +       A+  L+  P  + G  +  L  R   AL         +    + L
Sbjct: 465 LVAVCEVLQDPGANAALVRLLTGPRWRIGPRDLALLGRRARALVFHGGPDGADDDPDLRL 524

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
              V     ++  +          +    +  +            L         +  + 
Sbjct: 525 AGAVEGTDPSEVISLADALDTFLEAGGGPDDGLPFSAEARIRFARLAAELRELRRSLADP 584

Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            +    ++  T    V L            E       + +                +  
Sbjct: 585 LMDVLHRVLATTGLEVELSASPHALAARRRETLGNFLDVAAAFAGREGGAAVEGEATLQG 644

Query: 609 ITRLIDGETVKPK------IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
               +       K          +T+ +L   +S+ L +D + + GL    +P   ++  
Sbjct: 645 FLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVAKQFPSEQSRES 704

Query: 663 FLSRVMQSDLNLKTAEKYI------------------------GQAAHDFEMANGTRHLI 698
           + +        L+   + +                         +    +      R L+
Sbjct: 705 WTANAKVLPHELRGDARTLPDVTAWDSKGIAAFKDAMKGHQRTEELRLGYVTFTRPRSLL 764

Query: 699 Y---TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                        P   S +L  L         ++ +        W    +   + P  +
Sbjct: 765 LGSGHWWGPTQKRPRGPSAFLDALR--------EHCEAGYGEVEAWAEPPEEGAENPALR 816

Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                          +    ++  +   A  AR     +            D G
Sbjct: 817 ASAADRAWPLPLDPAALRHRRRAADVVLAHLARIETAGEGPTAQDGGHSSADGG 870



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/516 (9%), Positives = 110/516 (21%), Gaps = 49/516 (9%)

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
             E          +++      + D  A             +  +  +EL +  V      
Sbjct: 702  RESWTANAKVLPHELRGDARTLPDVTAWDSKGIAAFKDAMKGHQRTEELRLGYVTFTRPR 761

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
               L +      +       S +        +    +            E   L +  + 
Sbjct: 762  SLLLGSGHWWGPTQKRPRGPSAFLDALREHCEAGYGEVEAWAEPPEEGAENPALRASAAD 821

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
                     A           ++          +  T    G   +    F   +     
Sbjct: 822  RAWPLPLDPAALRHRRRAADVVLAHLARIETAGEGPTAQDGGHSSADGGPFPEPMDDLEP 881

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
                                +              +                    +   
Sbjct: 882  PEEPEPLEDPEWPAPPEDPYEDADAYGAADDSYEPY---------EDEPYGDGPHADPYG 932

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
                 +  +      D     + R      W R LD    +   +R +        P T 
Sbjct: 933  APEPGVPDITREPAEDELAPEEARLAS--SWDRDLDALAGE--LRRARETVHEVPLPGTL 988

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            + S++ +L +DP A       +    P  +       RGT FH  +    +         
Sbjct: 989  TASQLLRLADDPDAF-----ARELARPMPRPPRPAARRGTRFHAWVEARFEALSLPFLGP 1043

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                                  +I        +  +F       +       V +P ++ 
Sbjct: 1044 DE-----------LPGGEEDEAEIADERDLTALKEAFARTPYARR---TPYRVEVPVQLT 1089

Query: 891  IESIGIHLTGFADRIDLL----KSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
            +      + G  D +         G    +I D+KTG +      Q     QL++   A 
Sbjct: 1090 LAGR--IIRGRIDAVYRASGSGPDGGPRYEIVDWKTGRS------QDADPLQLAIYRLAW 1141

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
                   +         ++ ++    +       + 
Sbjct: 1142 AEQHGLPLSAVT---AAFVYVRSGEVVRPAGLPGRA 1174


>gi|297580958|ref|ZP_06942883.1| exodeoxyribonuclease V [Vibrio cholerae RC385]
 gi|297534784|gb|EFH73620.1| exodeoxyribonuclease V [Vibrio cholerae RC385]
          Length = 1148

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 110/908 (12%), Positives = 237/908 (26%), Gaps = 106/908 (11%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRDEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W        I  +       
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQ------PILWRELYAYTR 177

Query: 201 ELN--ASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           E               +   A  +         + I G +   P     +  +  H +  
Sbjct: 178 EQGHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA 297
           ++L     H    I +                                    ++ Q SL 
Sbjct: 238 LMLTNPCQHYWGDIRDRKYLARVAAKKRKLLQINGEQVTVGSEVSPLKGDVESYLQESLH 297

Query: 298 -------KLLDFLDIKREDVKRLGNVSNEMYGRS--MVISKSFLPPDTSDMRNTDILENK 348
                   LL  +     D   L   +++        +   S L    +D+ +    ++ 
Sbjct: 298 LSHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDD 357

Query: 349 I--------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                    P+I      + +    +   E   +   L    + +     +   ++  D 
Sbjct: 358 AKFAISSHKPSIVAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDI 417

Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           N        +         I   IS       +   +    LL           +  L++
Sbjct: 418 NAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLE 477

Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLD 494
            P  +A+F   E+  + AK  +E   +R   NS    +                + L+  
Sbjct: 478 TPAIMARFAIDEEEFATAKRWVEEAGIRWGLNSNTGAEFELPASEQNTWQFGIERMLLGY 537

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            +  +     +         + + ++  L   +   +  L   ++    T        W 
Sbjct: 538 AMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVETLSELRSQLAQTQSMEQWRYWL 597

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
              +                L  +    +L +L  ++ + G     +      ++T  + 
Sbjct: 598 NELLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLS 652

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
           G  +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  
Sbjct: 653 GTRISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGD 711

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFD 729
           ++  +          + +    L  +   R   +N   + S  +  LL     +     D
Sbjct: 712 RSRREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGD 770

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
              +         + L        +          A+    +     Q   D     +  
Sbjct: 771 EHLESDDSGRRLVKHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDY 830

Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
           +L++ +        D  +    +   +    K+R+  +      +++   D  F  + L 
Sbjct: 831 LLEVSWPME----LDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLED--DEPFALDGLS 884

Query: 850 PHIDIIWR 857
            +      
Sbjct: 885 AYQLRDEL 892


>gi|239917997|ref|YP_002957555.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|281415827|ref|ZP_06247569.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|239839204|gb|ACS31001.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
          Length = 1176

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 114/1102 (10%), Positives = 253/1102 (22%), Gaps = 173/1102 (15%)

Query: 18   FREMIPALLNGTLVENFRYDPLN--PLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              E I   ++  L         +  P  L   ++      A        +   G +  + 
Sbjct: 96   LAERINGRVDALLRSGLEIPGFDGEPEDLGRASVSTYHSYAG-----ALVRDHGLRIGVE 150

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
            P  + LG     +    ++ S+ +      +     + + + +  +    ++        
Sbjct: 151  PEARLLGGADAHRLMGAVVRSHPVVADTLGVAPSRLITQALRLAGDMAEHLVTADEVRGF 210

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
            L+      +A+ L          I+       D                   +      +
Sbjct: 211  LARLAEQGSALPLPPRAKTPSKEIQEFLTGLAD----------------RALMADLVARY 254

Query: 196  TERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
             E   E +            R       A    +     +++     +  A  R+ + + 
Sbjct: 255  DEVKREQDVMDFGDLLRHAARIAVEVPAAGEQERARFPVVLLDEFQDTSHAQMRIFAGLF 314

Query: 251  NHPN--------GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT----YSTHPQYSLAK 298
                        G  V    D H     +   +                        +  
Sbjct: 315  GPRGPEDDAPGLGHCVTAVGDPHQSIYGFRGASAGQLFAFPHAFPRLETGPGGAPRRVNA 374

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
             +  L I   + + +  V+N +       + +                   P        
Sbjct: 375  DVSHLTIAWRNEESILAVANAVAAPLNAHAAATGGAPVEVCTLR-------PRPGAGEGV 427

Query: 359  VALIEADNEREEAI-SIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINID 414
            V +       EEA   +A    ++           A++   R     V   L   G+  +
Sbjct: 428  VRVDRFVTAEEEAADVVARLGALTGAGPGGTTPSRAVLCRTRAQFGPVLDALDAAGLPYE 487

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL--E 472
            +     L      + + ++L+ +        +  L+  P  + G  +  + + +      
Sbjct: 488  VLGLSGLLALPEVAEVLAVLHVLADPTRSDQLVRLLTGPRWRIGVADLEVLQERARFVSR 547

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
            L A R      D       V                     +         V    +  +
Sbjct: 548  LRAGRAAGGREDPAGDAPDVAPVRDVSPEEDADAAALLEALDSLPGEGTDWVGSRGRGFS 607

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTC-LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
            P    +    +       +   +       + +          L             +  
Sbjct: 608  PEGLARLRAVNAELRRLFTRTGEDPADLIAEVIRETGLDVEVALRPGVSAAAARRHLNAF 667

Query: 592  IETGSCIKA--------NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
             +      A          + W + +    DG  V+        + +L    S+ L +D 
Sbjct: 668  QDAARDFGAGTTATDLTAFLAWTESVLEHEDGLGVENAEPTPGLVQVLTAHASKGLEWDV 727

Query: 644  LILGGLNEGVWPKNTAKNPF---------------------------------------- 663
            + + GL EG +P   A                                            
Sbjct: 728  VAVPGLQEGTFPSTRADRWTSPGAGALPWPLRGDRASLPQWDGSWAQDQRDWVQSAGTKY 787

Query: 664  --------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
                            +      +    A   +  A     L  +     N  P  AS +
Sbjct: 788  SSKAAQEGNPDPYAVAVAAHAEREERRLAYVAYTRARSALWLSTSLFKGVNKEPLPASAF 847

Query: 716  LQRLLVLGGTDFFDNL----------------------KKRGQCYLDWTRKLDYTTKQPH 753
            L+ +  L G      L                      +            +        
Sbjct: 848  LEEVAGLAGQVPGVALGPAPAEDDLPEANPAAGRTLVARWPFDPLDGPEAFVADPEDPED 907

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH-FKKDPDRTDRG--T 810
             +R +P P      R    +    +     A  A        +     +  D    G  T
Sbjct: 908  EERWQPLPRRSRARREAVEAAAAAVHAADPAALADDPELARQVDWVLLRRRDVAGTGGET 967

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL----------- 859
                 ++  +   +  +   +   +++ +                W              
Sbjct: 968  ALPEHVSVSLYGELAADPQAVAEQLRRPLPRPPAHAARRGTAFHAWLEERFGATGMLDID 1027

Query: 860  -FHKISHSFLEH--------EEKIQSSI---EKIFVNIPAKMAIESIGIHLTGFADRIDL 907
                 +  +++         E    S        FV  P +  +   GI L G  D I  
Sbjct: 1028 SAEDAADLWVDEALDLGPMQEWFRSSRWAERTPAFVEAPVETTV--GGITLRGRVDAIYR 1085

Query: 908  ---------LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV- 957
                           ++ D+KTG  P+    + L   QL++   A        I   ++ 
Sbjct: 1086 SGGDPRLPFDPEADWELVDWKTGAVPRGRDLE-LKSLQLAVYRLAWSR--LHGIPLERIG 1142

Query: 958  ANLFYIRLKQKFKIDCITNDKK 979
            A+  Y+   Q+     +  +++
Sbjct: 1143 ASFVYVAHGQERSFPDLPGEEE 1164


>gi|302037409|ref|YP_003797731.1| hypothetical protein NIDE2086 [Candidatus Nitrospira defluvii]
 gi|300605473|emb|CBK41806.1| conserved protein of unknown function, putative ATP-dependent
            nuclease, subunit A [Candidatus Nitrospira defluvii]
          Length = 1128

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 101/914 (11%), Positives = 229/914 (25%), Gaps = 67/914 (7%)

Query: 90   TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
               LL  Y+          L  +A L  +   +    ++    ES   L      A    
Sbjct: 242  AERLLARYDRPKRRKIELMLAAVADLFALLLAEGLGAVRSFSGESQELLLKDLGAAPTGW 301

Query: 150  KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE--RLVELNASSP 207
            +   D  + +E+ ++  + L  + +E       L + F+++  K + +   L        
Sbjct: 302  EE--DDYEAVESLQRIAKRLLRVDHELLQNLLALLSPFVQLVRKSFLDSGWLTFDGLVGK 359

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI---------- 257
                +       E L +     +++     + P    ++  +A  P              
Sbjct: 360  ARTLLRDHPPIREQLKR-DYRALLVDEFQDTDPVQYEIVLYLAERPGTQAGSWRETELES 418

Query: 258  --VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK-LLDFLDIKREDVKRLG 314
              +    D       +     ++ +        S   +  LA        +         
Sbjct: 419  GKLFIVGDPKQSIYAFRRADIEAFDHVVDRLEGSGALRCELATNFRSHAQVLDLVNGVFN 478

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
             +               + P+ S       +E ++   +       L  A   R EA  I
Sbjct: 479  RLLVAQPAIQPPNVPLTVQPNRSSQFRNPGVELRLVASEDDGE---LDSAAATRVEAEQI 535

Query: 375  AIALRMSLDENKK--------------KSALITADRNLARRVKLELTRFGINIDISAGIP 420
            A+ +   L    +                AL+      A      L R GI   I     
Sbjct: 536  ALMVSGLLRPAGQGGEARGPENGLRPGHIALLFRKLTQAEHYLEALRRHGIAYIIDGEKH 595

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
                     L ++L  +   +D +A+  L++  +           + + AL+  A+    
Sbjct: 596  FYRRQEVIDLVNILRCVDNPHDRIALVGLLRSAVGGLPDSALVSLQERAALDYRAVERLA 655

Query: 481  NSYDIMD--LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
            +        L+ L        +     P  +       +   + L    L     +    
Sbjct: 656  DWSSSHAEPLRRLYGRLARLHEQAPRCPLPEVLDLIFAQLPVLELAATSLHGEQAVANLF 715

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
              +          + T      ++ +      +           TL ++    I     +
Sbjct: 716  KVRQMAADLADRPNLT--LNGFVELMLERLTEQPEEAESALSEDTLDAVRVLTIHKAKGL 773

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
            +   +    +      G              I     + +   D      L   +  +  
Sbjct: 774  EFPLVILAGLHHGDGAGRGPARP-------LIWHDWSTGVQGLDLGDRCSLGAVLVAEKA 826

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
                   R     + +  A + +  +      A   R +                   ++
Sbjct: 827  RTREQAERRRLFYVGMTRARECLVLSG-----ALPRRRVRGALLELLEEAAGAELGRAEQ 881

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
              +  G      +  +G       ++      +              + R +     + L
Sbjct: 882  QDIPVGAVGLRQIVLQGDDRPPARQRERPVELEGAAMDRSFSERWMLRDRNWKAQRSEPL 941

Query: 779  INDPYAVYARRI-LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            +  P     +            ++       GT+ H ++           T ++   +  
Sbjct: 942  MVSPSDFIQKPAPASERETGRVRRVTPGKTVGTIVHRLLQYW------DFTADVASQVAL 995

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE-KIQSSIEKIFVNIPAKMAIESIGI 896
            I  +    +     +          +  +F +            I   +P  +       
Sbjct: 996  IDHTSLALDEPDTVMQEAVIEEVRDLLRTFAQSAAYDRLRRATVIGREVPFLVPWNGGRQ 1055

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKAGSFSQIDC 954
             + G  D +  +  G + I DYKT   P        +L   Q  L  AA++         
Sbjct: 1056 IMEGVIDLLYRI-DGALWIADYKTDMIPADQVAARAELYREQARLYRAAVEQSL-----G 1109

Query: 955  RKVANLFYIRLKQK 968
              V    +I L+  
Sbjct: 1110 EPVTGFEFIFLRHG 1123


>gi|229175134|ref|ZP_04302650.1| UvrD/REP helicase [Bacillus cereus MM3]
 gi|228608270|gb|EEK65576.1| UvrD/REP helicase [Bacillus cereus MM3]
          Length = 957

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 115/1044 (11%), Positives = 275/1044 (26%), Gaps = 150/1044 (14%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P S     ++       ++    +  + P    ++ +   T++A  EL +        ++
Sbjct: 28   PGSGKTYTLVE-----RILYLIEHRQVEPE---NILVATFTEKAANELVTRISNKL-HEA 78

Query: 73   TI---LPIIK--SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
             I   L  +   ++  +         L     N   + +++   L             + 
Sbjct: 79   NIKFNLNEMYVGTIHSLC--------LRILEENREYTRLKKNYILMDQFDQQYMLYQKLS 130

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
            + L  +   SL     +    ++ L   I+ +  E      L      +           
Sbjct: 131  RFLELDEIESLLNFNTSRWKQSQELLKWINKLSEEIVDINKLIESDEARLS--------V 182

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPAT 242
            L    K + + L+E NA      Q+        H             ++I     +    
Sbjct: 183  LGKCYKVYEQLLIEENALDFSTIQLETYNLLRNHKDVRNNLNEKLQYLMIDEFQDTNTIQ 242

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             +L+  +A       V+   D       +   T ++      N       Q  L+     
Sbjct: 243  EKLVFLLAGKQQNICVV--GDDDQGLYRFRGATIRNILEFPQNFPKGICQQVELSTNYRS 300

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA-- 360
                 +   +   +    + ++    +        +    +       + +    D    
Sbjct: 301  NPAIVQFYNQW--MEQNNWSQNGTTYRFDKKITAHESNKVNQKTVVKVSGEDGLDDWESE 358

Query: 361  ---LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV--KLELTRFGINIDI 415
                ++A  +  E   I+            + A +       R +     L   GI +  
Sbjct: 359  VYLFLQAMKKEGE---ISDW---------NQVAFLFRSVKNPRVLNLSRYLEERGILVYS 406

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                         +  +L   +F    +  +                             
Sbjct: 407  PRSNLFFERREIRL--ALGAILFLFPMYAQLRKWNDSAFLPEWEFYDACLL--------E 456

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                    +  DL     ++  T         +             L  D        L 
Sbjct: 457  FAEELRKPENHDLLRWCKEKARTHVTLNKNLDYAFSGLFYQLIQFELFSDL-------LS 509

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                    +    ++S ++KL               +     +  G ++   F++ I   
Sbjct: 510  DNVFTVKDSREVRNLSQFSKLLTKFE------YLHHISVFTQKNIGDSVVRFFNQYIRF- 562

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                        ++   ID      +   S  +  L   +S+ L F  +I+G L      
Sbjct: 563  ------------LLQGGIDEYEDDSEYAPSGCVSFLTIHQSKGLEFPIVIVGSLESTPRK 610

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQ--AAHDFEMANGTRHL-IYTRSLRENNIP--- 709
            + T  +  L          +  E+          +   +  ++L + +      N P   
Sbjct: 611  QYTDVDELLQTDFYQKPPFEPIERTKIYDFYRLYYTAYSRAQNLLVLSCQENVANGPGTR 670

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
             I S++                      Y       D  T     +  +       +  +
Sbjct: 671  NIPSKYFTE------------------SYRHLKSWRDEPTIYN-IELAQVKDVNIKREYS 711

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-KRINKNT 828
            ++ S I             + L    +         T  GTL H  I ++ K    N+  
Sbjct: 712  FT-SHINLFETCALQYKFYKELGFAPVRQ-----GATIFGTLVHQTIEDIHKSALKNEAY 765

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                  ++   +++++  +L     +       + +   ++   + Q+            
Sbjct: 766  LITEENIEDWFNTNYQ--HLSKRERVYLAPQTQEAALKQVKSYVEKQNGDWSYIQEAEVD 823

Query: 889  MAIESIGIHLTGFADRIDLLKSG-FVDITDYKTGDNPK-KETAQKLID--PQLSLEAAAL 944
            +++      L G  D +     G  V+I D+K+   P   +    L     QL + A  +
Sbjct: 824  VSLVKDKYILKGTIDLV--KGDGDTVEIVDFKSEKKPDLVKEQDALYRYKRQLEVYAHLV 881

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004
            +  +  ++       L+Y     +   +     KK  S   +  +++K+   IV  +++ 
Sbjct: 882  EERTNYKVSKMH---LYY---TGEKDGNPYVTFKKDKS---VINQTIKSFDRIVDRIESH 932

Query: 1005 EQPFISHLRLSE-----KSNIQSE 1023
            +  +    R  +           +
Sbjct: 933  D--YTIKQRPKKHCGNCDMRFYCD 954


>gi|152971750|ref|YP_001336859.1| exonuclease V subunit gamma [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956599|gb|ABR78629.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 1109

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 99/945 (10%), Positives = 234/945 (24%), Gaps = 118/945 (12%)

Query: 49  IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
           + V +    Q L+       G  + I      L           +L         S    
Sbjct: 19  VLVQSTGMAQWLQMTLAARFGIAANIE---FPLPASFIWDMFVRVLKDIPGESAFSKQSM 75

Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
             +L  L+     +       +     LS          LA  +AD+ D       +W  
Sbjct: 76  SWKLMTLLPQHLEED----DFILLRQYLSDDGDKRKLFQLAARVADLYDQYLVYRPEWLM 131

Query: 169 LHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT- 226
                   +           L  A   +T  L +             +    +       
Sbjct: 132 RWEAGQRVEGLGDAQQWQAPLWQALVSYTAELGQPQW-HRANLYQRFISTLEKADEPPAG 190

Query: 227 -KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI--------------- 270
               + I G +   P   + +  +  H +  ++      +    I               
Sbjct: 191 LPSRVFICGISALPPVYLQALQALGKHVDVYVLFTNPCRYYWGDIKDPAFLAKLLSRQRR 250

Query: 271 ----WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG------------ 314
                  +        +         Q     LL        D   L             
Sbjct: 251 HHREARALPLFRDTEQAPGLFNDAGEQDVGNPLLASWGKLGRDYIYLLAGLERYEELDAF 310

Query: 315 ---NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                 N ++     I +                      +      +++    + + E 
Sbjct: 311 VDIAPDNLLHNLQSDILELRNAAVAGQSAEAFAHSRDKRPLALDDRSLSIHVCHSPQREV 370

Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLELTRFGI-----NIDISAGIPLS 422
             +   L   L+ +     +   ++ AD +        +             IS      
Sbjct: 371 EVLHDRLLAMLEADPTLTPRDIIVMVADIDSYSPYIQAVFGAASGDRWLPWAISDRRARE 430

Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNK 480
           +        +LL+          +  L+  P+   +F   E+ L   +  +    +R   
Sbjct: 431 SHPVLQAFITLLSLPDSRFASEDVLALLDVPVLAARFNITEEGLRYLRQWVNESGVRWGM 490

Query: 481 NSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT- 532
           +  ++ +L        +                      S    + +  L+  ++  +  
Sbjct: 491 DDDNVRELDLPATGQHTWRFGLTRMLLGYAMDSREGEWQSVLPYDESSGLIAELVGNLAS 550

Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
            L+     +        +++W  +    L +  L +      L   E  +   ++    +
Sbjct: 551 LLMQLNLWRRGLAQQRPLAEWLPVCRDLLNDFFLPDSETEAALALIE--QQWLAVIDSGL 608

Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
           E     +       D + + +D + +  +      + I   +  R + F  + L G+N+G
Sbjct: 609 EAQYGEQVPLTLLRDELAQRLDQQRISQRFLAGP-VNICTLMPMRSIPFKVVCLLGMNDG 667

Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIP 709
           V+P+      F   +M          +         E        L  +   R   +N  
Sbjct: 668 VYPRTLPPLGF--DLMSQKPQRGDRSRRDDDRYLFLEALMSAEQTLYISYIGRSIQDNSE 725

Query: 710 TIASRWLQRL-------LVLGGTDFFDNLKKRGQCYLDWT-------------------- 742
              S  +Q L         L G +  D      +     T                    
Sbjct: 726 RFPSVLVQELVDYIGQSHCLAGDEELDCDASEARVKAHITHLHTRMPFDVANFQEDENKS 785

Query: 743 ---RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD---FI 796
                L    +Q         P       +  F ++ +    P   + ++ L+++     
Sbjct: 786 YAREWLAAAGQQGEAHSDFIQPLTAPPIDSLPFDQLLRFWQHPVRAFFQQRLRVNFRAEE 845

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI-IDSHFEKENLPPHIDII 855
                D   T  G   + +  +L+   I +   +++ + ++               +   
Sbjct: 846 DDIPDDEPFTLEGLSRYQLNQQLLNTLIEE--QDVSAMFRRFRAAGELPYGAFGELVWET 903

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
            R     ++   +   ++              ++ ++  G++LTG
Sbjct: 904 QRLEMQALAERVMAERQQA----------QSMEIDLQCGGVNLTG 938


>gi|258620941|ref|ZP_05715975.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio mimicus VM573]
 gi|258586329|gb|EEW11044.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio mimicus VM573]
          Length = 1148

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 115/987 (11%), Positives = 244/987 (24%), Gaps = 137/987 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL   +      DP  P       I V +    Q L+       G  + +      L   
Sbjct: 16  LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +    +L         +       L  L+     KL D  +    +  L      + 
Sbjct: 68  FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDREEFQPLQRYLQDDEDDSK 123

Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              LA+ +ADI D            WE    +        W        I  +       
Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQ------PILWRELYAYTR 177

Query: 201 ELN--ASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           E               +   A            + I G +   P     +  +  H +  
Sbjct: 178 EQGHSIYHRANLYQCFIEQLASGNFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA 297
           ++L     H    I +                                    ++ Q SL 
Sbjct: 238 LMLTNPCQHYWGDIRDRKYLARVAAKKRKLLQINGEQVTVGSEVSPLKGDVESYLQESLH 297

Query: 298 -------KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMR 340
                   LL  +     D   L   +++                 I    L        
Sbjct: 298 LSHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDD 357

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                    P+I      + +    +   E   +   L    + +     +   ++  D 
Sbjct: 358 AKFASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDI 417

Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           N        +         I   IS       +   +    LL           +  L++
Sbjct: 418 NAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLE 477

Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLD 494
            P  +A+F   E+  + AK  +E   +R   NS    +                + L+  
Sbjct: 478 TPAIMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGY 537

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            +  +     +         + + ++  L   +   +  L   ++    T        W 
Sbjct: 538 AMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVETLSELRSQLAQTQSMEQWRYWL 597

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
              +                L  +    +L +L  ++ + G     +      ++T  + 
Sbjct: 598 NELLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLS 652

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
           G  +  +      +     +  R + F  + L G+N+GV+P N     F  R +Q  +  
Sbjct: 653 GTRISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGD 711

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV------LGGTD 726
           ++  +          + +    L  +   R   +N   + S  +  LL           D
Sbjct: 712 RSRREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGD 770

Query: 727 FFDNLKKRGQCYLDWTRKLDY--------------TTKQPHYKRPK------------PF 760
                   G+  +++                      +     R +             +
Sbjct: 771 ENLESDDSGRRLIEYLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDY 830

Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIIT 817
               + P      E+++    P   + +R LK+     +   + D      G   + +  
Sbjct: 831 LLEVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRD 890

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
           EL++  +          +          +   P        L      +    E+     
Sbjct: 891 ELVENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELVQSAQQALALAEKIGFLC 950

Query: 878 IEKIFVNIPAKMAI----ESIGIHLTG 900
            + +       + +    +   + L G
Sbjct: 951 HQPLEDE-EIDLRLQPFDDGREVLLRG 976


>gi|290511198|ref|ZP_06550567.1| exodeoxyribonuclease V, gamma subunit [Klebsiella sp. 1_1_55]
 gi|289776191|gb|EFD84190.1| exodeoxyribonuclease V, gamma subunit [Klebsiella sp. 1_1_55]
          Length = 1125

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 104/974 (10%), Positives = 244/974 (25%), Gaps = 123/974 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP          + V +    Q L+       G  + I     
Sbjct: 11  DVLEALMEFIVERQRLDDPFQAE-----MVLVQSTGMAQWLQMTLASRFGIAANIE---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         S      +L  L+     +       +     LS  
Sbjct: 63  PLPASFIWDMFVRVLKDIPGESAFSKQSMSWKLMTLLPQHLEED----DFILLRQYLSDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   LA  +AD+ D       +W          +           L  A   +T  
Sbjct: 119 GDKRKLFQLAARVADLYDQYLVYRPEWLMRWEAGQRVEGLGDAQQWQAPLWQALVRYTAE 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             +    +           + I G +   P   + +  +  H +  
Sbjct: 179 LGQPQW-HRANLYQRFISTLEKADEPPAGLPSRVFICGISALPPVYLQALQALGKHVDVY 237

Query: 257 IVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYSLA 297
           ++      +    I                      +        +         Q    
Sbjct: 238 VLFTNPCRYYWGDIKDPAFLAKLLSRQRRHHREARALPLFRDTEQAPGLFNDAGEQDVGN 297

Query: 298 KLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLAGLERYEELDAFVDIAPDNLLHNLQSDILELRNAAVAGQSAEA 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                    +      +++    + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 FAHSRDKRPLALDDRSLSIHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +             IS      +        +LL+          +  L+  P
Sbjct: 418 YSPYIQAVFGAASGDRWLPWAISDRRARESHPVLQAFITLLSLPDSRFASEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L        +              
Sbjct: 478 VLAARFNITEEGLRYLRQWVNESGVRWGMDDDNVRELDLPATGQHTWRFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L+  ++  +   L+     +        +++W  +    L +
Sbjct: 538 DSREGEWQSVLPYDESSGLIAELVGNLASLLMQLNLWRRGLAQQRPLAEWLPVCRDLLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +      L   E  +   ++    +E     +       D + + +D + +  +  
Sbjct: 598 FFLPDSETEAALALIE--QQWLAVIDSGLEAQYGDQVPLTLLRDELAQRLDQQRISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+      F   +M          +    
Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMSQKPQRGDRSRRDDD 712

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLKK 733
                E        L  +   R   +N     S  +Q L         L G +  D    
Sbjct: 713 RYLFLEALMSAEQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHCLAGDEELDCDAS 772

Query: 734 RGQCYLDWT-----------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
             +     T                         L    +Q         P       + 
Sbjct: 773 EARVKAHITHLHTRMPFDVANFQEDENKSYAREWLAAAGQQGEAHSDFIQPLTAPPIDSL 832

Query: 771 SFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
            F ++ +    P   + ++ L+++          D   T  G   + +  +L+   I + 
Sbjct: 833 PFEQLLRFWQHPVRAFFQQRLRVNFRAEEDDIPDDEPFTLEGLSRYQLNQQLLNTLIEE- 891

Query: 828 TPEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
             +++ + ++               +    R     ++   +   ++ Q           
Sbjct: 892 -QDVSAMFRRFRAAGELPYGAFGELVWETQRLEMQALAERVMAERQQAQ----------S 940

Query: 887 AKMAIESIGIHLTG 900
            ++ ++  G++LTG
Sbjct: 941 MEIDLQCGGVNLTG 954


>gi|304312500|ref|YP_003812098.1| Exonuclease V γ-subunit [gamma proteobacterium HdN1]
 gi|301798233|emb|CBL46455.1| Exonuclease V γ-subunit [gamma proteobacterium HdN1]
          Length = 1172

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 98/884 (11%), Positives = 220/884 (24%), Gaps = 112/884 (12%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L    +E  R  PL+P  L      V +    Q L+  F E  G   +           +
Sbjct: 23  LRDLAIEWVRAHPLSP--LEDEVFIVQSNGMAQWLKLAFAEQKGLGISASMRFTMPSRFL 80

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP------------E 133
            +     ++L  +  P  S   +   + R+     ++LP   +                 
Sbjct: 81  WQANR--MVLGADSVPETSAFDKSRLVWRIYRWLVHELPAFAEFSAAETEAPAHSFAALR 138

Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKW------------------EDLHALKNE 175
           + L      A    LA+ LAD+ D  +     W                    L  +   
Sbjct: 139 AYLGDASDVAKCFGLAQRLADLFDQYQVYRADWLNDWQQGRDVLRNATGEGAFLADVSVP 198

Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAG 234
               +W  A    +I     +E   +   S      ++ +    E          I + G
Sbjct: 199 DG-QYWQPAL--WRILLNETSELGQQSGRSKVHQRFLSALSLAKECESEWNLPRRIQVFG 255

Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
            +         ++ +A H    + +     H    I +       +    +   ++ PQ 
Sbjct: 256 ISSMSTQMLEAIAAIARHAQVMLYVLNPSPHYWMDIMDGRELLGIHRH-RHAHKASLPQG 314

Query: 295 --------SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                    +  LL     +  D   L    +        I     P +         ++
Sbjct: 315 LSSEKMAMRVNPLLAAWGKQGRDYIGLLYHYDANETSHRKIDFFEAPREVEGDTLLACVQ 374

Query: 347 NKIPNIQKCFS-------------DVALIEADNEREEAISIAIALRMSLDENK----KKS 389
           + I  ++   +              V      + + E   +   L   ++       +  
Sbjct: 375 DDIFELRPAPASPADRVPVAAEDLSVQFHLCHSRQREVEVLHDRLLDLMERVPDLQARDI 434

Query: 390 ALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
            ++  D          +           I   +S     ++   ++ L +LL        
Sbjct: 435 IVMAPDIEQYAAHVDAVFGNIETDRARYIPFTLSDRRQRASHPLAAALDALLRLPDMRFS 494

Query: 443 FMAIATLVKHPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVL 493
              +  L+  P  +  F   E  LS  +  +E   +R   +      L        +   
Sbjct: 495 VSDVLALLDVPAVRKRFDLAETDLSTLRRWMEQAGVRWGLHEAQRSSLDLPVGFAANTWQ 554

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISD 552
             +        V   Q+    +       L   +   +  L +  +          +++ 
Sbjct: 555 FGLRRMFLGYAVGEGQAWQDVQPFAPVSGLEGALAGKLQALMLALERLWEQFRCVHTVAA 614

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
           W          +   E      +    +        +             +   + +   
Sbjct: 615 WADNLRAMCDLLFDAEDESDRFILLRFQEAIHDWQMACSEGGIENETLPLLVVRESLLSA 674

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           +D E +  +      +     +  R + F  + L G+N+G +P++     F     +   
Sbjct: 675 LDSEGLSQRFLAG-CVNFCTLMPMRSIPFRVVCLLGMNDGEYPRSRKPMDFDLMAGRYRP 733

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFD 729
             ++            E     R +   +   R   ++     S  + +L       +  
Sbjct: 734 GDRSRRDDDRY--LFLEALLSARQVFYVSHVGRSIRDDSTRPPSVLVAQLRDYLEAAYCL 791

Query: 730 NLKKRGQCYLDWTRKLDYTTKQP-------------------------HYKRPKPFPPLE 764
               +                QP                                  P  
Sbjct: 792 ESDDQEVSSALLDSITFEHPLQPFSARYFGVDPRFFSYAEEWRNAHNAPAGNAANVLPEL 851

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                 S ++I+  + +P   +    L++      + D D    
Sbjct: 852 RLEFPLSLAQIENFLREPVEWFYATRLEVSQKQEEEADFDNETF 895


>gi|261344762|ref|ZP_05972406.1| hypothetical protein PROVRUST_06026 [Providencia rustigianii DSM
           4541]
 gi|282567206|gb|EFB72741.1| exodeoxyribonuclease V, gamma subunit [Providencia rustigianii DSM
           4541]
          Length = 1124

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 92/774 (11%), Positives = 205/774 (26%), Gaps = 107/774 (13%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI---LP 76
           +++  L+   +       P          + V +    Q L+ E  +  G  + I   LP
Sbjct: 11  DLLKELIAHLMENEPLSHPFEQE-----IVLVQSPGMSQWLQIELAKRFGIAANINYPLP 65

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
                   + + F   L       P  S   +     +L+ I  + + +   +      L
Sbjct: 66  AT-----FIWDMFRRVLPDI----PKESAYTKSAMTWKLMTILPDVINEPEFEPL-RHYL 115

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS--KY 194
                      LA  +AD+ D       +W              W    +F+   S  + 
Sbjct: 116 QEDSDKRKLHQLAGRIADLFDQYLVYRPEW-----------IEKWQRN-EFVDGLSSNQL 163

Query: 195 WTERL------VELNASSPVGYQIALMRAEAEHLMKGT------KGPIIIAGSTGSIPAT 242
           W  RL                ++  L ++  E L             I I G +   P  
Sbjct: 164 WQRRLWLCLVEHTDKLQQSPWHRANLYQSFIEQLTSNPSLGQNLPKRIFICGISSLPPVY 223

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----- 297
            + ++ +A H +  ++      +    I ++                 H           
Sbjct: 224 LQALNAIAEHTDIHLMFTNPCRYYWGDIQSSAFLARLQQRKLRHYIDKHEISRFKIEDHA 283

Query: 298 ---------------KLLDFLDIKREDVKRLGNVSNEMY-----GRSMVISKSFLPPDTS 337
                           L  +  + R+++  +  +                    L  D  
Sbjct: 284 GGLFNDLGEQNIANPLLASWGKLGRDNLYFISQIEAANEISAFVDTRRANLLENLQQDIL 343

Query: 338 DMRNTDILENKIP---------NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--- 385
           D+ N   L   +           I +  S V      + + E   +   L    +++   
Sbjct: 344 DLENHAQLGITLENYETSQNKRPISELDSSVTFHSCHSAQREVEVLQDRLLALFEQDPTL 403

Query: 386 -KKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
             +   ++ AD +        +     +   I   IS    L           LL+    
Sbjct: 404 TPRDVIVMVADIDSYAPYIQAVFGNTSSTHYIPFSISDRKALQAHPILQAFIMLLDLPQS 463

Query: 440 LNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------S 490
                 + TL++      +F   E  LS  +  +    +R   +  ++  L        +
Sbjct: 464 RFSTEQVLTLLEVSAFAARFDIDESELSLLRRWVNESGIRWGLDDDNVRALSLPVIGQNT 523

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLS 549
                                      +    L   +   +  L  T +  +       +
Sbjct: 524 WQFGLSRMLLGYAMDSRNGPWNGILPYDECSGLAAQLAGKLALLVDTLRQWRTLLEQERT 583

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
           + +W  +    + +    +      L      +    +    + +            D +
Sbjct: 584 LEEWKDICQQLIDSCFKVDSETELVLALLT--EQWHKIIENALTSEYQETIPLRLIRDEL 641

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
           +   D E +  +    + +     +  R + F  + L G+N+G +P++      L   + 
Sbjct: 642 SVCFDDEKISQRFLAGA-VNFCTLMPMRSVPFKVVCLLGMNDGAYPRSIPP---LGFDLM 697

Query: 670 SDLNLKTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRL 719
           ++   +   K      + F  A     + L  +       +N P   S  +  L
Sbjct: 698 AEKTQRGDRKRRDDDRYLFLEALNSAAQQLYISYIGLSIRDNQPCNPSVLVTEL 751


>gi|218283945|ref|ZP_03489813.1| hypothetical protein EUBIFOR_02409 [Eubacterium biforme DSM 3989]
 gi|218215524|gb|EEC89062.1| hypothetical protein EUBIFOR_02409 [Eubacterium biforme DSM 3989]
          Length = 849

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 66/545 (12%), Positives = 137/545 (25%), Gaps = 84/545 (15%)

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                   +W          +   E  K      E   K   + F+ ++     +  +   
Sbjct: 312  RLEQQALEWIHNHAFLFHALDFIEIAKHIQNLHEHVSKEDLNAFNDVMSLIQDVHTHIHN 371

Query: 605  W--IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
               +DI+   I   +   K      + I    +   L    + L G N   +P     + 
Sbjct: 372  ADDLDILIHQIQNLSANQKANTIEGVLIGSRQDITSLR-PIVFLTGTNANAFPSLKLHSG 430

Query: 663  FLSRVMQSDLNLKTAE-KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
                      NL   E +   Q    F+  +    L       +       S     +  
Sbjct: 431  IFDEAYVKSTNLPNLETRIQNQQTQIFDCLSLCETLYILYPQSDYQGKNYESS--SEIEN 488

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
               T            +         T      +        +      S S ++     
Sbjct: 489  WIQTKPKFITTPDSFNW--------TTPSIDLNETSAKAIFFKDNHFKGSISRLESYARC 540

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
            P++   +  L L          D   RG++ H+++  + K      T      + Q +  
Sbjct: 541  PFSHALKYGLFLKEKEDIT---DIRIRGSILHHVLEMISKD-KQDYTSLSKEEIYQYVRK 596

Query: 842  HFEKENLPPHIDIIWR-HLFHKISHSFLEHEEKIQSSIEKIFV-----NIPAKM--AIES 893
             F          + W      +I+   +   E++ S      +                 
Sbjct: 597  EFAFAKKVLLQQVTWFNSQIEEITDKLVLIFEQLHSFETNWHMNIDKQEHKFSYSYPWNE 656

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA-----QKLIDPQLSLEAAALKA-- 946
              I L G+ DRID   +    I DYK+      +       +  +  QL+    A +   
Sbjct: 657  YTIDLYGYIDRID-SSNTSFCIFDYKS----SDKDINLNEFESGLALQLATYTLAYEKES 711

Query: 947  -----GSFSQIDCRKVANLFYIRLKQKFKIDCI--------------------------- 974
                 G F          L Y +L  + K+  +                           
Sbjct: 712  NLIPVGCFYIALRTSPETLTYGKLNYRKKVPELNVINEPDMLETFTKNRKLKGWHFNDAS 771

Query: 975  ----------TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
                         K   + + +  +  + +  ++  + +G+    +     + +     Y
Sbjct: 772  IYCDDIKQYMPVKKTNPALETIKSEWSQVIDSLLEDISSGQ----ALPNHVKDACKYCAY 827

Query: 1025 DHLAR 1029
              + R
Sbjct: 828  RSICR 832


>gi|206580606|ref|YP_002236756.1| exodeoxyribonuclease V, gamma subunit [Klebsiella pneumoniae 342]
 gi|206569664|gb|ACI11440.1| exodeoxyribonuclease V, gamma subunit [Klebsiella pneumoniae 342]
          Length = 1125

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 103/974 (10%), Positives = 243/974 (24%), Gaps = 123/974 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP          + V +    Q L+       G  + I     
Sbjct: 11  DVLEALMEFIVERQRLDDPFQAE-----MVLVQSTGMAQWLQMTLASRFGIAANIE---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         S      +L  L+     +       +     LS  
Sbjct: 63  PLPASFIWDMFVRVLKDIPGESAFSKQSMSWKLMTLLPQHLEED----DFILLRQYLSDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   LA  +AD+ D       +W          +           L  A   +T  
Sbjct: 119 GDKRKLFQLAARVADLYDQYLVYRPEWLMRWEAGQRVEGLGDAQQWQAPLWQALVSYTAE 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             +    +           + I G +   P   + +  +  H +  
Sbjct: 179 LGQPQW-HRANLYQRFISTLEKADEPPAGLPSRVFICGISALPPVYLQALQALGKHVDVY 237

Query: 257 IVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYSLA 297
           ++      +    I                      +        +         Q    
Sbjct: 238 VLFTNPCRYYWGDIKDPAFLAKLLSRQRRHHREARALPLFRDTEQAPGLFNDAGEQDVGN 297

Query: 298 KLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLAGLERYEELDAFVDIAPDNLLHNLQSDILELRNAAVAGQSAEA 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                    +      +++    + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 FAHSRDKRPLALDDRSLSIHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +             IS      +        +LL+          +  L+  P
Sbjct: 418 YSPYIQAVFGAASGDRWLPWAISDRRARESHPVLQAFITLLSLPDSRFASEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L        +              
Sbjct: 478 VLAARFNITEEGLRYLRQWVNESGVRWGMDDDNVRELDLPATGQHTWRFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L+  ++  +   L+     +        +++W  +    L +
Sbjct: 538 DSREGEWQSVLPYDESSGLIAELVGNLASLLMQLNLWRRGLAQQRPLAEWLPVCRDLLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +      L   E  +   ++    +E     +       D + + +D + +  +  
Sbjct: 598 FFLPDSETEAALALIE--QQWLAVIDSGLEAQYGDQVPLTLLRDELAQRLDQQRISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+      F   +M          +    
Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMSQKPQRGDRSRRDDD 712

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLKK 733
                E        L  +   R   +N     S  +Q L         L G +  D    
Sbjct: 713 RYLFLEALMSAEQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHCLAGDEELDCDAS 772

Query: 734 RGQCYLDWT-----------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
             +     T                         L    +Q         P       + 
Sbjct: 773 EARVKAHITHLHTRMPFDVANFQEDENKSYAREWLAAAGQQGEAHSDFIQPLTAPPIDSL 832

Query: 771 SFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
            F ++ +    P   + ++ L+++          D   T  G   + +  +L+   I + 
Sbjct: 833 PFDQLLRFWQHPVRAFFQQRLRVNFRAEEDDIPDDEPFTLEGLSRYQLNQQLLNTLIEE- 891

Query: 828 TPEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
             +++ + ++               +    R     ++   +   ++             
Sbjct: 892 -QDVSAMFRRFRAAGELPYGAFGELVWETQRLEMQALAERVMAERQQA----------QS 940

Query: 887 AKMAIESIGIHLTG 900
            ++ ++  G++LTG
Sbjct: 941 MEIDLQCGGVNLTG 954


>gi|319897567|ref|YP_004135764.1| exonuclease v (recbcd complex), gamma chain [Haemophilus influenzae
           F3031]
 gi|317433073|emb|CBY81447.1| exonuclease V (RecBCD complex), gamma chain [Haemophilus influenzae
           F3031]
          Length = 1085

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 116/963 (12%), Positives = 240/963 (24%), Gaps = 137/963 (14%)

Query: 56  AIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
             Q L+ E  + TG  + +   +P        + +   A  L +  L  P      +  L
Sbjct: 1   MAQWLQIELAKKTGISANLKFPMP-----ASFIWQ-LYAQNLPATALENPFDKDSMMWRL 54

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW------ 166
            RLI I+  K  +    L      S          L+  +AD+ D       +W      
Sbjct: 55  MRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIADLFDQYLVYRPEWIFAWEK 112

Query: 167 -------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL-----NASSPVGYQIAL 214
                  + +   +       +       K   + W   +V++     +A+         
Sbjct: 113 GEDEQITDQIQKQQPNLNATLFAQIQGNTKWQGELWRALVVDVKSDVGDATHRAALHNQF 172

Query: 215 MRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
           +   A+    K     I I G      A   ++  +++  +  +            I + 
Sbjct: 173 LALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAMSSEVDIHLFFNNPCQEYWGDISDL 232

Query: 274 ITEKSTNITSSNTTYSTHPQYSLA----------------------------KLLDFLDI 305
             +   +            Q   +                                 +  
Sbjct: 233 RLDYLRSRKRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQKENLQEGNPLLAAWGKMGR 292

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                          Y  +                    LENK  NI +    + L    
Sbjct: 293 DFLYTLVRDEEHIPTYPVNAYQKIESNSLLGQLQSQILHLENKPLNIAENDRTLTLHSCH 352

Query: 366 NEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDI 415
           +   E   +   L    ++      K   ++ AD N        +          I   +
Sbjct: 353 SAMREVEVLHDYLLDLFNQEPNLTPKDVVVMVADINQYTPYIQAVFGQKNGNAPQIPFSL 412

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP---------LAKFGFPEKYLSR 466
           S      + +  S   +LL           +  L+  P         LA      ++ S 
Sbjct: 413 SDNKLSESDVLVSSYLALLRLKESNFSAEDVLALLDIPAIRERFNISLADLPLVREWASD 472

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
           +     L   +   N         L    +       H     S        L   L  +
Sbjct: 473 SGIRFGLQKNQDGINFNSWQAG--LERMILGYAMREEHGIWQDSLGLNSSYGLKGELAGN 530

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           +    T L              SI  W ++    L +  +        +++ +       
Sbjct: 531 LSHFFTVLSALHQTLQQA---HSIEKWQEILTALLSDFFVQNEDTSDTIFYIQ------E 581

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEKSSTLFILGTLESRLLNFDT 643
             +++ E    +        D+I  +I     +        +  +     L  R + F  
Sbjct: 582 KINELAEHLKSLHFTEELQADVIADVITMKLEDAPNSLKFLAGKVNFCTLLPMRSVPFKV 641

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRS 702
           + L G+N+  +P+    N F           +             E     R     +  
Sbjct: 642 VCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY--LFLEALLAARDYCYISYV 699

Query: 703 LRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC--------------------YLD 740
            R   +N P   S  + +LL        +N+    +                        
Sbjct: 700 GRSITDNQPKEPSVLVSQLLDYINQGQSENVLTVIEHPMTAFSPDNFKYNEKFTRSFATK 759

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
           W     +     + +          +        +   + +P   +  + L + F    +
Sbjct: 760 WLPIAQFDASSNNSEFAVTMTENPEKIEEVELDSLVSFVENPVKFFFEKQLGVYFRDKDE 819

Query: 801 KDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
           +  D                   ++      ++ +L +Q    +F +  +   +      
Sbjct: 820 RIADS-----------ENFTLSGLDNYSLNNDLIYLDEQNFADYFRQAEVKGVLPRAEFG 868

Query: 859 L--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----SIGIHLTGFADRIDLLKSGF 912
                 I  + LE +EKI    E    +I   +A++    +  I L G+ D +       
Sbjct: 869 KVYAENIRDNVLEFKEKIADLGEPKQASIDFNIAVDWQNENQKIRLFGYMDALF--GDNS 926

Query: 913 VDI 915
             I
Sbjct: 927 QVI 929


>gi|260430925|ref|ZP_05784896.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414753|gb|EEX08012.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 800

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 83/695 (11%), Positives = 185/695 (26%), Gaps = 108/695 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E++     + G+ +  +P + +   +                  V  
Sbjct: 79  EILAVTFTNKAAREMKERVGRLLGQPAEGMPWLGTFHSIC-----------------VKL 121

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  ELA L   +     D    L  +  L    +  +  W A+ LA IID  +     
Sbjct: 122 LRRHAELAGLKSNFTILDTDDQLRLLKQ--LVQAANIDDKRWPARMLAGIIDDWKNRALT 179

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            + + A     Y    +            +  RL ELNA       + ++     H    
Sbjct: 180 PDKVPAADAGAYNNKGV-------ELYAQYQTRLRELNAVDFGDLLLHVVTIFQTHADVL 232

Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
            +       I++     +  A    +  +A        +   D       W      +  
Sbjct: 233 EQYQRWFRYILVDEYQDTNIAQYLWLRLLAGGHKNICCV--GDDDQSIYGWRGAEVGNIL 290

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +      P   + +L          +    NV      R                 
Sbjct: 291 RFEKDF-----PGAHVVRLEQNYRSTPHILAAASNVIRGNESR----------------- 328

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------RMSLDENKKKSALIT 393
               L  ++   +     V LI   +  EEA  I   +       R     N  + A++ 
Sbjct: 329 ----LGKELWTDKPEGEKVRLIGHWDGEEEARWIGEEIDAMQGGTRGVRPMNLDEIAILV 384

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              +  R  +      G+   +  G      +      +    +    D +A   +V  P
Sbjct: 385 RASHQMRAFEDRFLTIGLPYKVIGGPRFYERMEIRDAMAYFRLVVSPEDDLAFERIVNAP 444

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                          +  +    R  +               +   +        + +  
Sbjct: 445 ----------KRGLGDKAQQTIQRTAREHGVS---------LVQGARIAVEQGLIKGKGG 485

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
              +EL   L         P +  + +     G   +               + +     
Sbjct: 486 AALRELVEGLARWNALTRGPRIEIEDDAVIDDGTAPVRYGPPEVSHIELAQIVLDESGYT 545

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCI--KANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
             W  ++          + E  + +    N   +++ ++ ++D E    +      + I+
Sbjct: 546 AHWQNDKTPEAPGRLENLKELVNQLDNFENLQGFLEHVSLVMDNE----QDSGGPKVSIM 601

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + L G  +G++P   + +         +  LK  E+    A   +   
Sbjct: 602 TLHAAKGLEFPAVFLPGWEDGLFPSQRSMD---------ESGLKGLEEERRLA---YVGI 649

Query: 692 NGTRHL-IYTRSLRENN----IPTIASRWLQRLLV 721
                +   + +            + SR++  L  
Sbjct: 650 TRAEEVCTISFAANRRVFGQWQNAMPSRFIDELPE 684


>gi|149184293|ref|ZP_01862611.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21]
 gi|148831613|gb|EDL50046.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21]
          Length = 1159

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 87/898 (9%), Positives = 201/898 (22%), Gaps = 110/898 (12%)

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             +    RL E+            D        +  + P        +A  + ++ +    
Sbjct: 272  AIEPEARLAEIDGFRQRNCILKKDGDPTSMKGAEKNDPSFGDKQQVIADAVREVAERAAL 331

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--- 218
                              +     +  +  +K W E                  R     
Sbjct: 332  LGL-------------AAFVAPQLEAGRAFAKRWEEAKAREGLVDFDDLIHRAARLLSSS 378

Query: 219  -----AEHLMKGTKGPIIIAGSTGSIPATARLMSTV---------ANHPNGAIVLPGLDC 264
                   + +  +   I++  +  +  A   ++  +         A       +    D 
Sbjct: 379  QMADWIRYKLDRSFDHILVDEAQDTNKAQWAIVKALTDDYFDGLGARGDAVRTIFTVGDY 438

Query: 265  HIPTAIWNTITEKSTNITSSNTTYS-THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                  +   + ++                 +  +     +  R     L          
Sbjct: 439  KQAIFGFQGTSPENFREARDYFRDKMDRAAVAAEEARANANTGRLQEFDLERSYRTNQTV 498

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCF----SDVALIEADNEREE--------- 370
               +  +        +           +          ++ + E  ++ +E         
Sbjct: 499  LSFVDDAIRAIGPEGLGLDKSDGEHRGSDTPGMVTLWKEIRIAEGGDDADEEKGWLARHD 558

Query: 371  ---AISIAIALRMSLD----------------ENKKKSALITADRNLARRVKLELTRFGI 411
               A +IA  +    D                +      L+   R LA  +   L   G+
Sbjct: 559  RKLADNIARQVADWFDTKGEGFTLVKGETRRAQAGDVMVLVQKRRELASLIVARLYAHGV 618

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
             +     + L   L    L + +    +  D + +A L+  PL  +   +  +   +   
Sbjct: 619  PVAGVDRLRLGNPLAVKDLMAAIRFAAQPLDDLTLANLLVSPLIGWSQEDLLVFGYRTKG 678

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
              +      +    +      L  I  + +          +     +    LV  + +  
Sbjct: 679  VRLWEHLRSSDEPRVAQTVHTLREILRRADFDSPQQLLHWILVGPMDGRRALVARLGREA 738

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
               +    N  +      ++                        WF+     L     + 
Sbjct: 739  NDPIDELLNAANAFAASHVASLQGFIR-----------------WFDAGDGELKREAGEG 781

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
             +    +  +  + +     ++    ++P      TL                 + G  E
Sbjct: 782  GDQVRVMTVHGSKGLQAPIVILADSAIRPDASGELTLE--------------EQVLGAEE 827

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
                   A            +    A + + +      +A                    
Sbjct: 828  TNTVPLPALTSDEKVGPVRAVEEVDAARSMQEHWRLLYVAMTRAEEALFIGGSLGPRDAK 887

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
                           F  +       +       +     P  +   P P  E       
Sbjct: 888  NGPHEDSWYARLAALFDTDTALDDPIWGARWEVGERAPSVPPVETTVPEPVCELPLWAKQ 947

Query: 772  FSEIKQLINDPYAVY-ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
                +     P A          D     +       RG L H ++  L +   +     
Sbjct: 948  PVGPEPRPPRPLAPSGLGEAEGSDPPLPPEVAAGAARRGVLIHALLERLPEVPRDHRADR 1007

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                + Q            P +D   R      + + LE          +    IP    
Sbjct: 1008 ARSWLAQQA----------PDLDNTEREEMLARALAVLEEPGFADIFGAQALAEIPLAAT 1057

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALKA 946
            +E     + G ADR+ +     + + D+KT   P             Q++   AAL+A
Sbjct: 1058 VEGQ--VVMGTADRLLVTPE-KITVVDFKTARRPPASQGAIPDSTLRQMAAYVAALEA 1112


>gi|294631280|ref|ZP_06709840.1| UvrD/Rep family helicase [Streptomyces sp. e14]
 gi|292834613|gb|EFF92962.1| UvrD/Rep family helicase [Streptomyces sp. e14]
          Length = 988

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 80/784 (10%), Positives = 185/784 (23%), Gaps = 97/784 (12%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST------------ILPIIKSLGDVV 85
               +    V     T +A  EL     +   +                 P+I +     
Sbjct: 65  GTGQVAPEQVLGLTFTNKAAGELAERVRKALIRAGVTDPDVIDPDDPPGEPVIST----- 119

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
              F   LL  + L   +    RLL  A    +    L +         P   P    + 
Sbjct: 120 YHAFAGRLLTDHGLRIGLEPSTRLLADATRYQLAARVLREA--------PGPYPALTRSF 171

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKI 190
             L  +L  +   +     + EDL A                           A   L  
Sbjct: 172 PDLVSDLLALDAELAEHLVRPEDLRAWDAGLLDELATAKLSNADLRKVPETAAARRELAG 231

Query: 191 ASKYWTERLVELNASSPVGYQIALMRA----EAEHLMKGTKGPIIIAGSTGSIPATARLM 246
               +     E +            R     E   L++     +++     +  A   L+
Sbjct: 232 LVLCYRAAKRERDLLDFGDQIALAARLAQLPEVGRLLREEFRVVLLDEYQDTSVAQRILL 291

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
           + +     G  V    D       W   +  + +    +  ++     +   L       
Sbjct: 292 AGLFGGGTGHPVTAVGDPCQAIYGWRGASVANLDDFPDHFAHADGRPAARQAL------- 344

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                     S        ++  +          +  +   +     +    V       
Sbjct: 345 ----------SENRRSGGRLLDLANGLAAPLRAMHAGVAALRPAPGAERDGLVRCALLPT 394

Query: 367 EREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
             EE   +A ++   +   +   + A++    +    ++  L    + +++     L   
Sbjct: 395 HAEEIAWLADSVAHLVRTGKAPGEIAVLCRTASDFAEIQGALVARDVPVEVVGLSGLLHL 454

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
              + L ++   +       ++  L+  P  + G  +  L   +  L +   R   +  D
Sbjct: 455 PEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGARDLALLGRRARLLVAHARVADDDPD 514

Query: 485 IMDLKSLVLDRIATQKNNTHVPH--WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
               +++     A   +         +S L     +  +            L        
Sbjct: 515 RRLAEAVEGVDPAEVISLADALDTFLESPLDGRGDDDGLPFSPEARVRFARLAAELRELR 574

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
               +  +    ++       V L            E       + +            A
Sbjct: 575 RALSDPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDVAASFAANEREASLLA 634

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
                      +           +T+ +L   +S+ L +D + + GL  G +P    +  
Sbjct: 635 FLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGTFPSAQGREK 694

Query: 663 FLSRVMQSDLNLKTAEKYI------------------------GQAAHDFEMANGTRHLI 698
           + ++       L+     +                         +    +      R L+
Sbjct: 695 WTAQAKVLPHALRGDADTLPDVGAWDAKGMKAFHEAMKDHQHTEELRLGYVTFTRPRSLL 754

Query: 699 Y---TRSLRENNIPTIASRWLQRLLVL-----GGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
                        P   S +L+ L        G  + + +    G+      R       
Sbjct: 755 LGSGHWWGPSQKKPRGPSDFLRALYDHCAAGYGEIEAWADEPAEGEENPALHRAAADQVW 814

Query: 751 QPHY 754
               
Sbjct: 815 PLPL 818


>gi|110802216|ref|YP_697369.1| ATP-dependent nuclease subunit B [Clostridium perfringens SM101]
 gi|123047632|sp|Q0SWW7|ADDB_CLOPS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|110682717|gb|ABG86087.1| ATP-dependent nuclease subunit B [Clostridium perfringens SM101]
          Length = 1158

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 85/250 (34%), Gaps = 35/250 (14%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
            + S S +++    P+A Y +  LK         +    D G+  H I+ E   +   K+ 
Sbjct: 779  SLSVSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDL 836

Query: 829  -------PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQ 875
                       +++  ++D+  +      L       +    F +I      +  E+  +
Sbjct: 837  KWSDLSKENCKNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKR 896

Query: 876  SSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGD 922
            S  E     +           K+ +      +L G  DRID L   G   + I DYKTG 
Sbjct: 897  SDFEIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRIDKLNLDGETYLRIIDYKTGS 956

Query: 923  NP-KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKK 980
                       +  QL +   AL   S + + +      + Y R+      D I   K  
Sbjct: 957  KKFDLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGD 1011

Query: 981  YSADELSEKS 990
             + +E+  + 
Sbjct: 1012 LTEEEIKSEI 1021


>gi|312171296|emb|CBX79555.1| Exonuclease V gamma subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 1122

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 96/948 (10%), Positives = 226/948 (23%), Gaps = 110/948 (11%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
             L S  + V +    Q L+    E     + I          + + F   L       P
Sbjct: 28  DPLCSEVVLVQSPGMAQWLQMSLAEEFKIAANI--DFPLPASFIWDMFVRVLPDI----P 81

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             S   +     +L+ I  + LP     +     LS          LA  +AD+ D    
Sbjct: 82  KESAFNKSSMSWKLMAILPDMLPGEAFTML-RHYLSDDNDKRKLFQLASRVADLFDQYLV 140

Query: 162 EEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
              +W +        +      +    L  A   +T RL +             +     
Sbjct: 141 YRPQWLNGWEKGRLTEGLGEAQIWQAPLWAALVEYTRRLGQPEW-HRANLYQRFISRLEN 199

Query: 221 HLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
              +       + I G +   P   + +  +  H +  ++      +    I +      
Sbjct: 200 SSSRPANLPDRVFICGISALPPVYLQALQALGKHIDIHLLFTNPCRYYWGDIQDYGFLAR 259

Query: 279 TNITSSNTTYSTHP-------------------QYSLAKLLDFLDIKREDVKRLGNVSNE 319
                        P                   Q +   LL        D   L      
Sbjct: 260 LQSRHRRHYLDGRPVPQFRDAENASSLFNDAGEQQTSNPLLASWGKLGRDNLYLLAQMEP 319

Query: 320 MYGRS--------------MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
               +                + +          ++          +      + +    
Sbjct: 320 NEVFAFVDIEPTNLLQTLKRDLLELEDHAVIGLQKSEWENSRSKRILAADDRSLVIHLCH 379

Query: 366 NEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDIS 416
           + + E   +   L   + ++     +   ++ AD +        +         +   IS
Sbjct: 380 SPQREVEVLQDRLLAMMADDTTLTARDIIVMVADIDAYTPFIQAVFGNAPADRAVPFAIS 439

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELV 474
                          SLL+          +  L++ P    +F   E+ L   ++ +   
Sbjct: 440 DRRASQAHPALQAFISLLSLPDSRFTAEEVLALLEVPAVASRFAIDEEGLRLLRHWVAES 499

Query: 475 ALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
            +R   +   + +L        +                           + +  L+  +
Sbjct: 500 GVRWGLDDDGVRNLDLPATGQHTWHFGLTRMLLGYAMNSEAGDWQGILPFDESSGLIAEL 559

Query: 528 LQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
              +  L+      +        +  W  L    L +  + +      L   E  +    
Sbjct: 560 AGNLAELLMQLNRWQQWLSEPRELDSWLPLCRRMLDDFFISDAETEAALALIE--EQWQQ 617

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
           + +  ++ G           D ++  +D + +  +      +     +  R + F  + L
Sbjct: 618 VINYGVQAGYQQAVPLTLLRDELSSRLDQQRISQRFLAGP-VNFCTLMPMRSIPFKVVCL 676

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRE 705
            G+N+GV+P+      F   +M   L      +         E  N   + L  +   R 
Sbjct: 677 LGMNDGVYPRTLPPLGF--DLMSQQLQKGDRSRRDDDRYLFLEALNSAQQQLYISYIARS 734

Query: 706 --NNIPTIASRWLQRLLVL------------------------GGTDFFDNLKKRGQCYL 739
             +N     S  +  L+                                  +    + + 
Sbjct: 735 IQDNTERYPSVLVSELVEYISQSFCLAEDSARDADASAEAVVKHLHHLHSRMPFAVENFH 794

Query: 740 DWTRKLDYTTKQPHYK--RPKPFPPLEAQPRTYSFS-----EIKQLINDPYAVYARRILK 792
                  +  +       +    PP        S +      + +    P   +    L 
Sbjct: 795 PQAEFRSFAAEWLPAASGQGTAHPPFMQSLPEESETVIDFDRLVRFWRHPVRAFFSLRLG 854

Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
           + F       PD          +    +   +  +  +     K                
Sbjct: 855 VSFQLEETGLPDAEPF--SLDGLSRYQVNSLLLNSLIDGKEGGKLYARQRAAGALPYGAF 912

Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
             ++                + +++ E        ++++   G  L+G
Sbjct: 913 GELFWQEQEAEMSELAARVREQRAAAE------SWEVSLTPGGFTLSG 954


>gi|238787260|ref|ZP_04631059.1| Exodeoxyribonuclease V gamma chain [Yersinia frederiksenii ATCC
           33641]
 gi|238724522|gb|EEQ16163.1| Exodeoxyribonuclease V gamma chain [Yersinia frederiksenii ATCC
           33641]
          Length = 1123

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 90/766 (11%), Positives = 190/766 (24%), Gaps = 87/766 (11%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL+    ++N               + V +    Q L+ +  +     + I 
Sbjct: 11  DLLKAITTALIEREPLDNPFEQE---------VVLVQSPGMAQWLQMQLAQQFSIAANIE 61

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
                L      +    +L         S      +L  L+      L +       +  
Sbjct: 62  ---FPLPATFIWEMFTRVLPGIPKESAFSKDAMTWKLMWLLP----DLLENPAFSPMKRY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191
           LS          LA  +AD+ D            WE    + N      W      L + 
Sbjct: 115 LSDDNDKRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIDNLDDAQQWQA---LLWVE 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249
              +T +L +             +R   E  +        + I G +   P   + +  +
Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIRTLLESDICPAGLPKRVFICGISALPPIYLQALQAL 230

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------T 290
             H +  ++      +    I +                                     
Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRQRRHYRESIDVKLFRQPEQAEQLFNAD 290

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349
             Q     LL        D   L +  +E+      +             +   LE+   
Sbjct: 291 GEQDLSNPLLASWGRLGRDHMYLLSQVDEIQEVHAFVDIKPDNLLHGIQHDMLELEDHAI 350

Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391
                           +Q     ++L    + + E   +   L   L    +   +   +
Sbjct: 351 MGTTAETLARSDQKRELQLTDRSLSLHVCHSPQREVEVLQDNLLRLLAADPELTPRDIIV 410

Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
           + AD +                  +   IS               +LL+          +
Sbjct: 411 MVADIDSYTPYIQATFGNATGNRYLPFAISDRKASQAHPALQAFITLLDLPQSRFTSEQV 470

Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497
             L++ P     F   E  L R +  +    +R   +  ++ +L        +       
Sbjct: 471 LALLEVPALANKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWHFGLTR 530

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556
                               + +  L   +   +   L+     +     + ++S+W  L
Sbjct: 531 MLLGYAMDSTAGDWQGVLPYDESSGLAAELAGQLADMLMQLSQWRQQLNESRALSEWLPL 590

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L      ++     L   E  +    + S  I              D +   +D E
Sbjct: 591 CRQLLDTFFEPDNETEAVLVLIE--QQWQKVISYGIAAQYPDIVPLNLLRDELASRLDNE 648

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P+      F   +M   +    
Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMAKQVRRGD 705

Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719
             +         E      + L  +   R   +N     S  +  L
Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSQRYPSVLVSEL 751


>gi|167968315|ref|ZP_02550592.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            H37Ra]
          Length = 1031

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 114/1055 (10%), Positives = 256/1055 (24%), Gaps = 151/1055 (14%)

Query: 50   YVPTKRAI----QELRSEFIEITGKK------STILPIIKSLGDVVEEKFTADLLLSYNL 99
               T++A     + +RS    + G +      +   P++ +        F   LL  Y L
Sbjct: 4    LTFTRKAAGQLLRRVRSRLARLAGTRLGCGDPAACAPVVST-----YYAFAGSLLRDYGL 58

Query: 100  NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
              P+    RLL    L  +  + +      L  +   +   S    +W    L + +   
Sbjct: 59   LLPLEPDTRLLSETELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDT 116

Query: 160  ETEEKKWEDLHALKNEKYGMWWLL----------------AADFLKIASKYWTERLVELN 203
                    +L  L +      +                      L        ER+    
Sbjct: 117  RALRDTHVELERLVHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGK 176

Query: 204  ASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGA 256
                     +  R  A         +     +++     +  A   ++S++      +G 
Sbjct: 177  VMDFAMQMASAARLAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGL 236

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
             +    D       W   +  +    +++   S      + +LL       + ++    +
Sbjct: 237  ALTAVGDPIQSIYGWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGI 296

Query: 317  SNEMYGR-----------------------------------------SMVISKSFLPPD 335
            S E   R                                             +    PP 
Sbjct: 297  SAEARRRSVAVRALRPRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADGVKPPT 356

Query: 336  TSDMRNTDILENKIPNIQKC---FSDVALIEADNEREEAISIAIALRMSLDENKKKSALI 392
             + +   +     I +  +     ++V  +       E   +   LR+  D     +A+ 
Sbjct: 357  AAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMR 416

Query: 393  TADRNLARRVKLELTR-FGINIDISAGIPLSTTLHSSILTS--------LLNAIFKLNDF 443
                   R    +L   +   + +S   P + +  S  + +        L +AI      
Sbjct: 417  VLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCLADAISDPGSA 476

Query: 444  MAI--------------ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
                              + ++  L           R    ++         S      +
Sbjct: 477  EGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGGWAGPE 536

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
             L                  S  S       + + + +   + P              + 
Sbjct: 537  HLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQVLTVH 596

Query: 550  ISDWTKLTVTCLQNVCLD--EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             +   +  V  + ++           + W  +  +    L       G+           
Sbjct: 597  AAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAV 656

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRL---LNFDTLILGGLNEGVWPKNTAKNPFL 664
               + +  +  + +                +      DTL++ G + G            
Sbjct: 657  ADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEF 716

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR-----SLRENNIPTIASRWLQRL 719
               ++  ++   A          +  A               ++   +        ++R 
Sbjct: 717  LCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRGDVERG 776

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYT------TKQPHYKRPKPFPPLEAQPRTYSFS 773
              L       +L           R  D                     P    P   S S
Sbjct: 777  AALVAAAMSADLPGSTTDIDHPPRPGDAPWSTYVDALLAARAHAARGAPARGLPNHLSVS 836

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
             + +L+ DP     R + +L   P           G  FH  + +     +  +  ++  
Sbjct: 837  SLVELVGDPVGARQRLMCRLPKRPDPH-----AWLGDAFHAWVQQFYGAELLFDLGDLPG 891

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
               + +         P  +  + R                  ++     V +P +M I  
Sbjct: 892  AADREV-------GDPEELAALQRA-----------FTASSWAARTPAAVEVPFEMPIGD 933

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
                + G  D + +   G   + D+KTG  P    A +    QL++   A    +     
Sbjct: 934  T--VVRGRIDAVFVDPDGGATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCP 989

Query: 954  CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
               V   FY  ++    +           A  L++
Sbjct: 990  TSSVRTAFYY-VRSGITVVPDELPAPGELAMLLTD 1023


>gi|113953686|ref|YP_730267.1| exodeoxyribonuclease V gamma chain [Synechococcus sp. CC9311]
 gi|113881037|gb|ABI45995.1| possible exodeoxyribonuclease V gamma chain [Synechococcus sp.
           CC9311]
          Length = 1098

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 82/743 (11%), Positives = 192/743 (25%), Gaps = 53/743 (7%)

Query: 39  LNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98
             P     + I V T    + L  +  +  G  + +       G  + +          +
Sbjct: 24  DPPGPFEELEIVVNTWPTSRWLGEQLAKANGISALV--RFPFPGSRLRQLVR----CILD 77

Query: 99  LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP-----ANAIWLAKNLA 153
           L+P   +  R   L   +L     L D       +      +S       +   LA+ LA
Sbjct: 78  LDPTSEDPWRAERLVWSVLKVLPGLLDHPSAESLKLWWEQHVSVSGRLNRDHWQLARCLA 137

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
           D +D         ++L                 +     +     L        V   + 
Sbjct: 138 DAVDDYALYR--PQELSQWMKGHGDADLPAHLLWQPELVRALAALLPCEPFGLQVQKAVQ 195

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            +R             + + G +   P    L+  ++      + L      +       
Sbjct: 196 QLRNGDVSATALPPR-LRLFGISNLAPVQVELLQGLSGLMAIELYLLTPCPELWQRSEQR 254

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR--------LGNVSNEMYGRSM 325
                    +            L  +L  +  + + +            +  +       
Sbjct: 255 RQTLGPAWNTPPDGPWLLESPRLEAILGRMGAEFQLLLEGNGDCFLGQWDQGDLFAAPIQ 314

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQ--KCFSDVALIEADNEREEAISIAIALRMSLD 383
           + +    P    +     +++   P +      S +  +       E   +   +   L 
Sbjct: 315 IAASEQRPATLLEQVQQQLVDGSAPTLTPVDHDSSLRFLACAGPWREVQLVRDQILQWLA 374

Query: 384 EN----KKKSALITADRNLARRVK------LELTRFGINIDISAGIPLSTTLHSSILTSL 433
            +     +   ++T D      +        + T   I   ++     ST   S    +L
Sbjct: 375 SDPSLEPRDVLVMTPDVERYAPLLTSVFGDHDATGVNIPWRLTDRSQQSTPGLSQGFMAL 434

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGF--PEKYLSRAKNALELVALRGN-----KNSYDIM 486
           L    +      +  L+ +P  +           R    L+    R       +   D  
Sbjct: 435 LRLASERLTASGLEGLLANPALQVLQGITATDAVRITECLQQTGFRWGVDGKERGGDDTH 494

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            L+  +   +                +     L +  ++     +  L            
Sbjct: 495 SLRWCLDRWLLGLILPAEPGLAPGGCAPFQGGLTIQQLEEWWPLLDGLA---QWIIRLRQ 551

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
             S S WT      L+++  D        W ++          +     + +  +    +
Sbjct: 552 PHSPSAWTTQLNQLLKHLYGDGGDW---AWEQQAIVEALDTMQQQASECT-LDLDLTVVV 607

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            I+   +  ++ +    +S  L I      R +    ++L GL+   +P+   +  F   
Sbjct: 608 SILDEALSADSGRFGH-RSGALTISALEPMRAIPHRLIVLMGLDSQGFPRQQERPGFHLL 666

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN--NIPTIASRWLQRLLVLGG 724
             Q  L   ++            + +  +HL+ + + R+         +  +Q+ L L  
Sbjct: 667 EQQRRLGDPSSTDQDRYV-LLEALMSARQHLLISWNARDERKGEELPPAPPVQQWLTLLK 725

Query: 725 TDFFDNLKKRGQCYLDWTRKLDY 747
                   +R          LD 
Sbjct: 726 EQLTPEQFER-VVLEQPANPLDP 747


>gi|257790996|ref|YP_003181602.1| ATP-dependent nuclease subunit B-like protein [Eggerthella lenta
           DSM 2243]
 gi|325830736|ref|ZP_08164120.1| hypothetical protein HMPREF9404_5296 [Eggerthella sp. HGA1]
 gi|257474893|gb|ACV55213.1| ATP-dependent nuclease subunit B-like protein [Eggerthella lenta
           DSM 2243]
 gi|325487143|gb|EGC89586.1| hypothetical protein HMPREF9404_5296 [Eggerthella sp. HGA1]
          Length = 968

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 86/809 (10%), Positives = 189/809 (23%), Gaps = 72/809 (8%)

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                      +A + G   A    +  +  +          +     A+     E    
Sbjct: 116 AREALPHLTAPVAANAGLSAAERDALMVLERYAELLQEAGCCESSQAAALLPEAMEAPAP 175

Query: 281 ITSSNTTYSTHPQYSLAKLLD---FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +  +        +  +   L     +    +  +              ++ + F P    
Sbjct: 176 LVLAGFDDLDCAEERMTAALAQRTDVVRLDDGCRAPSGADGRASELQGLLERLFKPAMPE 235

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397
            +R T  +   +P  +     +           A ++A     +++E +    +    R+
Sbjct: 236 PLRPTGRVRFLLPAGRYAAPTLVASTV------AQAVADERLRAVEEGRDPLPVAVTARD 289

Query: 398 LARRV---KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                      L   G    +SA    + T       +L             +     P 
Sbjct: 290 PRALFDDVAGALLEAGAASAVSASRAFADTAFGRAFLALHAFACGAWSIAQASDFALGPF 349

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
           +  G        A    +    R    +    + ++      A +              +
Sbjct: 350 SGIGIRTACELDAAWRGDRTVERARIAADLARESEAAADALTALEA------------GD 397

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
            D  LA        +             +       +                  R   +
Sbjct: 398 ADGALAGFEARLRARTDLDPAFRAEQLAAVSCARRFAAACSRANAVFDGALPLLERMPVS 457

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                     +   +  +      +  A     ++   +D  +   ++ +     +L  L
Sbjct: 458 SSARSARDEGARPDALFMSLDEAAELPACSCAALVLCDLDAGSYPVRLVEDGGTLLLEKL 517

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
                  D L            +  +     RV+ ++   +     + +   D       
Sbjct: 518 GL-GRPADALAASRRRFFRALSSACETVVCERVLNTEDANEAYPSVMFEELLDCYREADA 576

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                   L +  +          L             + G+     + +L         
Sbjct: 577 GEDDRATGLPKPLVAFAMLAGEDALHDNLALVCEGVQPRVGKGGATLSWELSAAGAVSPE 636

Query: 755 KRPKPFPPLEAQPR--------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
           +RP+   P   +            S S ++  +  PY  +A R L+L             
Sbjct: 637 QRPRIVLPRSPREGLRGADAALALSPSALESYLECPYKWFALRRLRLSEPD---AGFGPL 693

Query: 807 DRGTLFHNIITELIKKRINKN--------TPEINHLMKQIIDSHFE----------KENL 848
           + G+  HN++    +               PE   L+ +  D H E              
Sbjct: 694 EMGSFSHNVLRSFYEHFREAGHAKVDSATLPEARALLGETFDRHLESQRNLKRSVNPLIP 753

Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM--AIESIGIHLTGFADRID 906
               +        K    FL+ E  +    E +               G  L G  DRID
Sbjct: 754 RTAFERAETADLRKRLVRFLDREALLLPGFEPVRFEFDFGSSEPFPYAGCLLRGSVDRID 813

Query: 907 LLKSGFVDITDYKTG--------DNPKKETAQKLIDP---QLSLEAAALKAGSFSQIDCR 955
           +  +G   + DYK                 A   + P   Q  + A   +      +   
Sbjct: 814 VNGAGQAVVIDYKGSLNGDYALDSASPAAQAGGAVLPHKVQTLMYAQVARK-----VLGL 868

Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSAD 984
            V    Y+   +  ++    +       D
Sbjct: 869 DVVGALYVSYGRDRRVSGAFDRTVVGERD 897


>gi|32265524|ref|NP_859556.1| hypothetical protein HH0025 [Helicobacter hepaticus ATCC 51449]
 gi|32261572|gb|AAP76622.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 730

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 113/363 (31%), Gaps = 36/363 (9%)

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
              + ++G LESR   F   ++   NEGV P     + FL+  ++  L + T        
Sbjct: 362 GGKIRVMGVLESRGFAFKKAVIVDFNEGVIPSKQESDLFLNSALRQKLKMPTMRDKERLQ 421

Query: 685 AHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            H +         +       E+N P+     L +   +   +            L   R
Sbjct: 422 KHYYYGIFSTADEIAVAYVSNEDNHPSFMLEELMQKSAVKHKNG-----DNFFTLLPQGR 476

Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
           KL+Y   +   + P+          T + S++K  +  P   Y      ++ +  F++  
Sbjct: 477 KLEYCEDEISGRLPR----------TLTPSKLKVFLECPRRYYYLYEECMNDLSLFQESA 526

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE-KENLPPHID--IIWRHLF 860
                G + H  +  + K  + K        + +      E        +    I     
Sbjct: 527 S---MGNIVHQCLESVYKPYVGKKVILDEKALYKSAQLWLEHSLVSHSALQSAHIEWLKC 583

Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
                 F   E   +  I ++       M +        G  DRI  +    +++ DYK 
Sbjct: 584 E--LKHFFALENGREVEILQLEGE---NMEVSYGDFIFYGRPDRIQKVGE-SIEVIDYKY 637

Query: 921 GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA---NLFYIRLKQKFKIDCITND 977
             + K ++ QK  D      A  L   +F     +      + +Y  +K   K +     
Sbjct: 638 RQSFKVQSLQKSTDF-----ALILYMQAFKAHYPQYAHLAISAWYWDIKGGEKKEENNEK 692

Query: 978 KKK 980
              
Sbjct: 693 SNI 695


>gi|37524631|ref|NP_927975.1| exonuclease V subunit gamma [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784056|emb|CAE12925.1| Exodeoxyribonuclease V gamma chain [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 1129

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 87/754 (11%), Positives = 188/754 (24%), Gaps = 100/754 (13%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              A   I V +    Q L+ +  E  G  + I      L           +L       
Sbjct: 28  DPFAQEVILVQSPGMSQWLQIQLAERIGISANIS---FPLPATFIWDMFTKVLPDIPKES 84

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             S      +L  L+      L    + +     L           LA  +AD+ D    
Sbjct: 85  AFSKDAMTWKLMALLPQ----LLPEAEFVGLRHYLDQDFDKRKIHQLAGRVADLFDQYLV 140

Query: 162 EEK----KWEDLHALKNEKYGMWWL-LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
                   W+    +        W       L   +    +         P  ++  L +
Sbjct: 141 YRPQWLESWQQGQLIDGLSDNQLWQKRLWLELTKYTHQLQQ---------PQWHRANLYQ 191

Query: 217 AEAEHLMKGT------------KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                L   T               + I G +   P   + +  +A H +  ++      
Sbjct: 192 RFISILENNTEQENSTDFSACLPKRVFICGISALPPVYLQALQALARHIDIHLMFTNPCK 251

Query: 265 HIPTAIW-------------------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           +    I                      +        + +       Q     LL     
Sbjct: 252 YYWGDIQNYAFLAKLSSRKPRHYKSEQELEYFKDPDNAQSLFNGDGEQDVSNPLLASWGR 311

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP--------------- 350
              D   L +   +       +            R+   LE+                  
Sbjct: 312 LGRDNLYLLSQLEQSSDIHAFVELEQDNLLHQLQRDILYLEDHAQIGSTKETFENSLKKR 371

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL 406
            +      ++     + + E   +   L   L++N     +   ++ AD +        +
Sbjct: 372 VLDPLDRSLSFHVCHSPQREVEVLQDQLLRLLEDNPSLTPRDIIVMVADIDSYTPYVQAV 431

Query: 407 T-----RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP- 460
                    I   IS               +LL+          +  L++ P     F  
Sbjct: 432 FGNVSVERYIPFAISDRKARQAHSILQAFITLLDLPQSRFTTEQVLALLEVPALANKFDI 491

Query: 461 -EKYLSRAKNALELVALRGNKNSYDIMDLK-----------SLVLDRIATQKNNTHVPHW 508
            E  L   +  +E   +R   N  ++ +L             L    +    ++   P  
Sbjct: 492 HEDGLRLLRRWVEESGVRWGLNDDNVEELSLPVTGQHTWRFGLTRMLLGYAMDSRSGPWK 551

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
           +    +E   LA  L   +      L+     +     + +++ W  +    L+   + +
Sbjct: 552 EVLPYDESSGLAAELAGQLA---EFLMQLSYWRKILAESRALTGWLPVCQQLLETFFVSD 608

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
           +     L   E  +    +    +          +   D +    D E +  +     ++
Sbjct: 609 NETELVLAMIE--QQWQKVIVNGLNARYQESVPLVLLRDELALQFDNEKISQRFLAG-SV 665

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
                +  R + F  + L G+N+G++P++     F     +     +             
Sbjct: 666 NFCTLMPMRSIPFKVVCLLGMNDGIYPRSIPPLGFDLMAEKGQRGDRKRRDDDRY--LFL 723

Query: 689 EMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL 719
           E        L  +   +   ++     S  +  L
Sbjct: 724 EALISAERFLYISYIGKSIRDDTECNPSVLVNEL 757


>gi|301169666|emb|CBW29267.1| exonuclease V (RecBCD complex), gamma chain [Haemophilus influenzae
           10810]
          Length = 1126

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 95/758 (12%), Positives = 193/758 (25%), Gaps = 99/758 (13%)

Query: 39  LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94
           L P        I V +    Q L+ E  + TG  + +   +P        + +   A  L
Sbjct: 24  LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
            +  L  P      +  L RLI I+  K  +    L      S          L+  +AD
Sbjct: 78  PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135

Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + D       +W             + +   +       +       K   + W   +V+
Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNATLFAQIQGNTKWQGELWRALVVD 195

Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                  A+         +   A+    K     I I G      A   ++  +++  + 
Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST------------------------- 290
            +            I +   +   +                                   
Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRKRYQFNKQDENKPLFSEDQLSQLENAQFDVTYQK 315

Query: 291 -HPQYSLAKLLDFLDIKREDVKRLGNVSNEMY--GRSMVISKSFLPPDTSDMRNTDILEN 347
            + Q     L  +  + R+ +  L      +     +                    LEN
Sbjct: 316 ENLQLGNLLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
           K  NI K    + L    +   E   +   L    +++     K   ++ AD N      
Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSLTPKDVVVMMADINQYTPYI 435

Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             +          I   +S      + +  S   +LL           +  L+  P  + 
Sbjct: 436 QAVFGQKNGDAPQIPFSLSDNKLSESDVLVSSYLTLLRLKESNFSAEDVLALLDIPAMRE 495

Query: 458 GFPEKYLSRAKNALE----------LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            F                            G   +     L+ ++L     ++       
Sbjct: 496 RFNISLADLPLVREWVTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                S   K      + H    ++ L       +      SI  W ++    L +  + 
Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQAH------SIEKWQEILTALLSDFFVR 609

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE---K 624
                  +++ +         +++ E    +  N     ++I  +I  +           
Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTLHFNEELQAEVIADVITMQLEDAPNSLKFL 663

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           +  +     L  R + F  + L G+N+  +P+    N F           +         
Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722

Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL 719
               E     R     +   R   +N P   S  + +L
Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQL 759


>gi|145632329|ref|ZP_01788064.1| phosphopyruvate hydratase [Haemophilus influenzae 3655]
 gi|229843996|ref|ZP_04464137.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae 6P18H1]
 gi|144987236|gb|EDJ93766.1| phosphopyruvate hydratase [Haemophilus influenzae 3655]
 gi|229812990|gb|EEP48678.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae 6P18H1]
          Length = 1124

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 117/982 (11%), Positives = 244/982 (24%), Gaps = 140/982 (14%)

Query: 39  LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94
           L P        I V +   +Q L+ E  + TG  + +   +P        + +   A  L
Sbjct: 24  LPPEDPFQQDIILVQSPNMVQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
            +  L  P      +  L RLI I+  K  +    L      S          L+  +AD
Sbjct: 78  PTTALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135

Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + D       +W             + +   +       +       K   + W   +V+
Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNNTLFAQIQGNTKWQGELWRALVVD 195

Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                  A+         +   A+    K     I I G      A   ++  +++  + 
Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297
            +            I +   +   +            Q   +                  
Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRKRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315

Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                          +                 Y  +                    LEN
Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIKSNSLLGQLQSQILHLEN 375

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
           K  NI K    + L    +   E   +   L    +++     K   ++ AD N      
Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPNLTPKDVVVMVADINQYTPYI 435

Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             +          I   +S        +  S   +LL           +  L+  P  + 
Sbjct: 436 QAVFGQKNGGAPQIPFSLSDNKLSENDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495

Query: 458 GFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            F           E                G   +     L+ ++L     ++       
Sbjct: 496 RFNISLADLPLVREWVADSGIRVGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                S   K      + H    ++ L       +      SI  W ++    L +  + 
Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQAH------SIEKWQEILTALLSDFFVR 609

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624
                  +++ +         +++ E    +        ++I  +I     +        
Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTLHFTEKLQAEVIADVITMKLEDAPNSLKFL 663

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           +  +     L  R + F  + L G+N+  +P+    N F           +         
Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722

Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---- 737
               E     R     +   R   +N P   S  + +LL        +N     +     
Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQSENALTVIEHPMTA 781

Query: 738 ----------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                              W     +     + +          +        +   + +
Sbjct: 782 FSPDNFKNNEKFTRSFATKWLSIAQFDASSNNSEFAVTMTENPEKIEEVELDALVSFVEN 841

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK--NTPEINHLMKQII 839
           P   +  + L + F    ++  D                   ++      ++ +L +Q  
Sbjct: 842 PVKFFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYFLNNDLIYLDEQNF 890

Query: 840 DSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----S 893
             +F +  +   +            I  + LE +EKI    E    +I   +A++    +
Sbjct: 891 ADYFRQAEVKGVLPHAEFGKVYAENIRDNVLEFKEKIADLGEPKQASIDFNIAVDWQNEN 950

Query: 894 IGIHLTGFADRIDLLKSGFVDI 915
             I L G+ D +         I
Sbjct: 951 QKIRLFGYMDALF--GDNSQVI 970


>gi|168206215|ref|ZP_02632220.1| ATP-dependent nuclease, subunit B [Clostridium perfringens E str.
            JGS1987]
 gi|170662334|gb|EDT15017.1| ATP-dependent nuclease, subunit B [Clostridium perfringens E str.
            JGS1987]
          Length = 1158

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 85/250 (34%), Gaps = 35/250 (14%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
            + S S +++    P+A Y +  LK         +    D G+  H I+ E   +   K+ 
Sbjct: 779  SLSVSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDL 836

Query: 829  -------PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQ 875
                       +++  ++D+  +      L       +    F +I      +  E+  +
Sbjct: 837  KWSDLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKR 896

Query: 876  SSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGD 922
            S  E     +           K+ +      +L G  DR+D L   G   + I DYKTG 
Sbjct: 897  SDFEIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGS 956

Query: 923  NP-KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKK 980
                       +  QL +   AL   S + + +      + Y R+      D I   K  
Sbjct: 957  KKFDLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGD 1011

Query: 981  YSADELSEKS 990
             + +E+  + 
Sbjct: 1012 LTEEEIKSEV 1021


>gi|169343384|ref|ZP_02864388.1| ATP-dependent nuclease, subunit B [Clostridium perfringens C str.
            JGS1495]
 gi|169298470|gb|EDS80556.1| ATP-dependent nuclease, subunit B [Clostridium perfringens C str.
            JGS1495]
          Length = 1158

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 85/250 (34%), Gaps = 35/250 (14%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
            + S S +++    P+A Y +  LK         +    D G+  H I+ E   +   K+ 
Sbjct: 779  SLSVSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDL 836

Query: 829  -------PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQ 875
                       +++  ++D+  +      L       +    F +I      +  E+  +
Sbjct: 837  KWSDLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKR 896

Query: 876  SSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGD 922
            S  E     +           K+ +      +L G  DR+D L   G   + I DYKTG 
Sbjct: 897  SDFEIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGS 956

Query: 923  NP-KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKK 980
                       +  QL +   AL   S + + +      + Y R+      D I   K  
Sbjct: 957  KKFDLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGD 1011

Query: 981  YSADELSEKS 990
             + +E+  + 
Sbjct: 1012 LTEEEIKSEV 1021


>gi|163857867|ref|YP_001632165.1| putative nuclease/helicase [Bordetella petrii DSM 12804]
 gi|163261595|emb|CAP43897.1| putative nuclease/helicase [Bordetella petrii]
          Length = 1152

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 98/781 (12%), Positives = 208/781 (26%), Gaps = 60/781 (7%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239
            LK+A      R  E      +        A                +   ++I     + 
Sbjct: 357  LKLAVAQLHLRFAETREVDFIEIAQRAAHALGSADDPGELLLKLDASIRHLLIDEFQDTS 416

Query: 240  PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
             A   L++T+       +G  +    D       +           +        P  + 
Sbjct: 417  LAQIHLLATLTAGWQPGDGRTLFLVGDPMQSIYRFRKAEVGLFLQAAEQGVGEISP--TF 474

Query: 297  AKLLDFLDIKREDVKRLGNVSNEM-YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
             +L D    +   V  +      +   R+   + +    D++        +    +    
Sbjct: 475  LQLTDNFRSQAGVVDWVNATFRGLLPPRNDAAAGAIAYTDSAAFNPALPGQAVCFHAAFS 534

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
                   +A  E      +  AL      ++   A++   R    ++   LT+ GI    
Sbjct: 535  ADGAGAADAAAEALTVQLVRQALDERDPASRHPVAILVRARGHLGQLVRRLTQAGIRCRA 594

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
               +PL+     S L  LL A+    D MA  ++++ P         +          ++
Sbjct: 595  VDLVPLAQRHVVSDLVQLLRALSHPADRMAWLSVLRAPWCGLTLHSLHALFG----HDLS 650

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                    + +  +                       + +      +L       +  + 
Sbjct: 651  TPVPVLLAEALRAQEARPASAPDAAAPGQSLSLWDAPAAQPCRAQRMLPQAEYARLAHVA 710

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                +  +  G + ++ W +     L            +    E+ ++L  L  ++   G
Sbjct: 711  PILLDAANASGAMPLAAWLESLWRRL-----GGAGLYASPSAAEDAESLFLLVERLAPHG 765

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                A     +  +    +G          S + I+   +S+ L FDT+IL GL++    
Sbjct: 766  GLDPARLDAALARLYAAPEGG-----AGDGSVVEIMTMHKSKGLQFDTVILYGLHKSPRA 820

Query: 656  KNTAKNPF------------------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            +      F                   +  +   L L+   +   +      +A      
Sbjct: 821  ERAPLVSFEQSGKRVLFGPVKPRADKEADPISRYLGLREKRRAAYETDRLLYVAATRARH 880

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
                                    L G  +     ++     DW      T +     R 
Sbjct: 881  RLHLVGNVAVDRATGQPKAPPAASLLGRLWEWLPAEQKMPPPDWQDDASDTDETDGQLRG 940

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
            +P   L  Q      +    + +  +AV A      +              GTL H  + 
Sbjct: 941  EPLRRLSDQAIETLRARRAAIGSPGFAVGAAVGQGAEHPAWQLDTAHDAAIGTLAHAWLA 1000

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI--- 874
             + +  ++    +       ++     +  LP                + L HE      
Sbjct: 1001 RIGQDGLSAWPADTLRGYLPVMQKQLTRAGLPAAQAPEAAQAVLDTLLATLAHERGRWLL 1060

Query: 875  -QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
             QS+  + +  I A   +  I + L+         + G   I DYKT   P  + +    
Sbjct: 1061 SQSAARREWPLIDAAGRVSVIDLALS--------TEDG-WLIVDYKT-ARPHPDESPAHF 1110

Query: 934  D 934
             
Sbjct: 1111 A 1111


>gi|325267673|ref|ZP_08134324.1| exodeoxyribonuclease V gamma subunit [Kingella denitrificans ATCC
           33394]
 gi|324980797|gb|EGC16458.1| exodeoxyribonuclease V gamma subunit [Kingella denitrificans ATCC
           33394]
          Length = 1156

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 89/936 (9%), Positives = 219/936 (23%), Gaps = 94/936 (10%)

Query: 41  PLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN 100
           P  LA+  I V ++   + +   +    G  + +    +    +  +           ++
Sbjct: 44  PNPLATEHIVVQSQGMRRYIHQFWARHLGIAANL--QFRLPAGLAWQLMREAKPDVPEMS 101

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
           P  S I +   L +L+        +    +       L     +   LA  +AD+ D   
Sbjct: 102 PFASEIMQWRLL-QLLQSPEFMQDETFACVRGVLDDYLKKGGLSRYHLAGQIADVFDQYL 160

Query: 161 TEEKKWEDLHALKNE--KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
                W +  +           +     +  +  +    R    +A   V     LM A 
Sbjct: 161 VYRPDWIEAWSAGRRVAALDAHYQDEQSWQAVLWRELDRR--SGDALHRVQLWHTLMDAL 218

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW------- 271
           AE  ++     + + G +   P    L   +A H +  I            +        
Sbjct: 219 AEGHIRSLPPRLFVFGLSTLAPMYMALFQQIALHRDVHIFALNPCALYWGDLLEPAQILQ 278

Query: 272 --------------------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                                     +    +       H Q++   L D L    +   
Sbjct: 279 RSDEADLALQGHPLLSSWGKQGRDFFNALSEAEAHQEEQHQQFAPEPLSDSLLHSLQFHI 338

Query: 312 RL---GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS----------D 358
           +     + +     R    +         D+   +I            +           
Sbjct: 339 QNLIQPDDACREGWRERHFAYVSKCAQHDDLIAQNIARQVQAASGDADAQLVAQLHADSS 398

Query: 359 VALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLEL----TRFG 410
           + +  A +   E   +   +R+ L +N        A++T +          +    +   
Sbjct: 399 LQIHSAHSPLRELQILKDQIRLMLQQNPSWQPGDIAVLTPNIEPYAPFIEAVFGQYSDAP 458

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAK 468
           +   I+             +   L  +    +   +  L+ +P  LA++      L    
Sbjct: 459 LPYSIADVKLSRKQPALDAIAQTLEVLGSRFEVEKVLALLDNPTILAQWQLTRDDLPLLT 518

Query: 469 NALELVALRGN------KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
            A+  + +R            D   L +                           +    
Sbjct: 519 EAVAQLNIRWGSDETERAQYGDDHPLFTWQQGLNRLVLGWMQPAQQNLWHDTAAFDSHPD 578

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            +    + +  +      K+      +I  W        QN+           + + E  
Sbjct: 579 HLPVFARFVQFVQFLLDTKHEWQTPATIEQWCGRLRRLSQNLLAPADDADRQAYQQWESS 638

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             +      +   +    +A    +     +   +          +     +  R L F+
Sbjct: 639 LANWQAQADVAQFTEQ-IHADTACEHAQHFLHQSS--EAGFLRGGITFCSMVPMRSLPFN 695

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
            + L GLN+G++P+ T    F           +              + +    L  +  
Sbjct: 696 AICLLGLNDGIFPRQTKAASFDLIAKLPQAGDRARRDDDRYL-FLEAVLSARHVLYLSYI 754

Query: 703 LRENNIPTIASR---------------------WLQRLLVLGGTDFFDNLKKRGQCYLDW 741
            R+       +                       ++R +       F     + +  L  
Sbjct: 755 GRDIRTDAERAPSTLLGELVDCIASLTDLGSQYLMRRWVTHHPLQAFSPRYFQDESSLQL 814

Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK-----QLINDPYAVYARRILKLDFI 796
                      ++ +    P       T     ++     +   +P   + +  L     
Sbjct: 815 FSTRQDFADALNHPQAAYAPFANQAACTAEAHPVEQKDLLRFWRNPVRYWLKHHLNWQSP 874

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
                 P            +         ++    +   +    S      +       +
Sbjct: 875 HFNDALPSSEPFLPDQPRRLDNAYLTARLQHQDFADTAARLKAQSLLPAGKIGELTAQDY 934

Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                 +  S L  +                   ++
Sbjct: 935 AIRA-AMLDSDLHSQALPHRFGTLHLGESSLHYQLQ 969


>gi|288933722|ref|YP_003437781.1| exodeoxyribonuclease V, subunit gamma [Klebsiella variicola At-22]
 gi|288888451|gb|ADC56769.1| exodeoxyribonuclease V, gamma subunit [Klebsiella variicola At-22]
          Length = 1125

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 103/974 (10%), Positives = 243/974 (24%), Gaps = 123/974 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP          + V +    Q L+       G  + I     
Sbjct: 11  DVLEALMEFIVERQRLDDPFQAE-----MVLVQSTGMAQWLQMTLASRFGIAANIE---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         S      +L  L+     +       +     LS  
Sbjct: 63  PLPASFIWDMFVRVLKDIPGESAFSKQSMSWKLMTLLPQHLEED----DFILLRQYLSDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   LA  +AD+ D       +W          +           L  A   +T  
Sbjct: 119 GDKRKLFQLAARVADLYDQYLVYRPEWLMRWEAGQRVEGLGDAQQWQAPLWQALVSYTAE 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             +    +           + I G +   P   + +  +  H +  
Sbjct: 179 LGQPQW-HRANLYQRFISTLEKADEPPAGLPSRVFICGISALPPVYLQALQALGKHVDVY 237

Query: 257 IVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYSLA 297
           ++      +    I                      +        +         Q    
Sbjct: 238 VLFTNPCRYYWGDIKDPAFLAKLLSRQRRHHREARALPLFRDTEQAPGLFNDAGEQDVGN 297

Query: 298 KLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLAGLERYEELDAFVDIAPDNLLHNLQSDILELRNAAVAGQSAEA 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                    +      +++    + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 FAHSRDKRPLALDDRSLSIHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +             IS      +        +LL+          +  L+  P
Sbjct: 418 YSPYIQAVFGAASGDRWLPWAISDRRARESHPVLQAFITLLSLPDSRFASEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L        +              
Sbjct: 478 VLAARFNITEEGLRYLRQWVNESGVRWGMDDDNVRELDLPATGQHTWRFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L+  ++  +   L+     +        +++W  +    L +
Sbjct: 538 DSREGEWQSVLPYDESSGLIAELVGNLASLLMQLNLWRRGLAQQRPLAEWLPVCRDLLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +      L   E  +   ++    +E     +       D + + +D + +  +  
Sbjct: 598 FFLPDSETEAALALIE--QQWLAVIDSGLEAQYGDQVPLTLLRDELAQRLDQQRISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+      F   +M          +    
Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMSQKPQRGDRSRRDDD 712

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLKK 733
                E        L  +   R   +N     S  +Q L         L G +  D    
Sbjct: 713 RYLFLEALMSAEQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHCLAGDEELDCDAS 772

Query: 734 RGQCYLDWT-----------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
             +     T                         L    +Q         P       + 
Sbjct: 773 EARVKAHITHLHTRMPFDVANFQEDENKSYAREWLAAAGQQGEAHSDFIQPLTAPPIDSL 832

Query: 771 SFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
            F ++ +    P   + ++ L+++          D   T  G   + +  +L+   I + 
Sbjct: 833 PFEQLLRFWQHPVRAFFQQRLRVNFRAEEDDIPDDEPFTLEGLSRYQLNQQLLNTLIEE- 891

Query: 828 TPEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
             +++ + ++               +    R     ++   +   ++             
Sbjct: 892 -QDVSAMFRRFRAAGELPYGAFGELVWETQRLEMQALAERVMAERQQA----------QS 940

Query: 887 AKMAIESIGIHLTG 900
            ++ ++  G++LTG
Sbjct: 941 MEIDLQCGGVNLTG 954


>gi|289705135|ref|ZP_06501539.1| UvrD/REP helicase [Micrococcus luteus SK58]
 gi|289558163|gb|EFD51450.1| UvrD/REP helicase [Micrococcus luteus SK58]
          Length = 1176

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 118/1102 (10%), Positives = 261/1102 (23%), Gaps = 173/1102 (15%)

Query: 18   FREMIPALLNGTLVENFRYDPLN--PLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              E I   ++  L         +  P  L   ++      A        +   G +  + 
Sbjct: 96   LAERINGRVDALLRSGLEIPGFDGEPEDLGRASVSTYHSYAG-----ALVRDHGLRIGVE 150

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
            P  + LGD    +    ++ S+ +      +     + + + +  +    ++        
Sbjct: 151  PEARLLGDADAHRLMGAVVRSHPVVADALGVAPSRLITQALRLAGDMAEHLVTADEVRGF 210

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
            L+      +A+ L          I+       D                   +      +
Sbjct: 211  LARLAEQGSALPLPPRAKTPSKEIQEFLTGLAD----------------RALMADLVARY 254

Query: 196  TERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
             E   E +            R       A    +     +++     +  A  R+ + + 
Sbjct: 255  DEVKREQDVMDFGDLLRHAARIAVEVPAAGEQERARFPVVLLDEFQDTSHAQMRIFAGLF 314

Query: 251  NHPN--------GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT----YSTHPQYSLAK 298
                        G  V    D H     +   +                        +  
Sbjct: 315  GPRGPEDDAPGLGHCVTAVGDPHQSIYGFRGASAGQLFAFPHAFPRLETGPGGAPRRVNA 374

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
             +  L I   + + +  V+N +       + +                   P        
Sbjct: 375  DVSHLTIAWRNEEAILAVANAVAAPLNAHAAAAGGAPVEVRTLR-------PRPGAGEGV 427

Query: 359  VALIEADNEREEAI-SIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINID 414
            V +       EEA   +A    ++           A++   R     V   L   G+  +
Sbjct: 428  VRVDRFVTAEEEAADVVARLGALTGAGPGGTTPSRAVLCRTRAQFGPVLDALDAAGLPYE 487

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA---L 471
            +     L      + + ++L+ +        +  L+  P  + G  +  + + +      
Sbjct: 488  VLGLSGLLALPEVAEVLAVLHVLADPTRSDQLVRLLTGPRWRIGVADLEVLQERARFVSR 547

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                           D   +   R  + + +         L     E    +        
Sbjct: 548  LRARRAAGGREDPAGDAPDVAPVRDVSPEEDADAAALLEALDSLPGEGTDWVGSRGRGFS 607

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
               +      N+    LS            + +          L             +  
Sbjct: 608  PEGLARLRAVNAELRRLSTRTGEDPADLIAEVIRETGLDVEVALRPGVSAAAARRHLNAF 667

Query: 592  IETGSCIKA--------NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
             +      A          + W + +    DG  V+        + +L    S+ L +D 
Sbjct: 668  QDAARDFGAGTTATDLTAFLAWTESVLEHEDGLGVENAEPTPGLVQVLTAHASKGLEWDV 727

Query: 644  LILGGLNEGVWPKNTAKNPFLSR------------------------------------- 666
            + + GL EG +P   A      R                                     
Sbjct: 728  VAVPGLQEGTFPSTRADRWTSPRAGALPWPLRGDRASLPQWDGSWAQDQRDWVQSAGTGY 787

Query: 667  -----------VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
                            +      +    A   +  A     L  +     N  P  AS +
Sbjct: 788  SSKAAQEGNPDPYAVAVAAHAEREERRLAYVAYTRARSALWLSTSLFKGVNKEPLPASAF 847

Query: 716  LQRLLVLGGTDFFDNL-KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            L+ +  L G      L     +  L     +   T    +       P           +
Sbjct: 848  LEEVAGLAGEVPGVALGPVPAEDDLPEANPVAGRTLVARWPFDPLDGPEAFVADPEDPED 907

Query: 775  IKQLINDPYAVYARR------------------------ILKLDFIPHFKKDPDRTDRGT 810
             ++    P    ARR                          ++D++   ++D   T   T
Sbjct: 908  EERWQPLPRRSRARRHGVEAAAAAVHAADPAALGDDPELARQVDWVLLRRRDVAGTGGET 967

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL----------- 859
                 ++  +   +  +   +   +++ +                W              
Sbjct: 968  ALPEHVSVSLYGELAADPQAVAEQLRRPLPRPPAHAARRGTAFHAWLEERFGATGMLDID 1027

Query: 860  -FHKISHSFLEH--------EEKIQSSI---EKIFVNIPAKMAIESIGIHLTGFADRIDL 907
                 +  +++         E    S        FV  P +  +   GI L G  D I  
Sbjct: 1028 SAEDAADLWVDEALDLGPMQEWFRSSHWAERTPAFVEAPVETTV--GGITLRGRVDAIYR 1085

Query: 908  ---------LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV- 957
                           ++ D+KTG  P+    + L   QL++   A        I   ++ 
Sbjct: 1086 SGGDPRLPFDPEADWELVDWKTGAVPRGRDLE-LKSLQLAVYRLAWSR--LHGIPLERIG 1142

Query: 958  ANLFYIRLKQKFKIDCITNDKK 979
            A+  Y+   Q+     +  +++
Sbjct: 1143 ASFVYVAHGQERSFPDLPGEEE 1164


>gi|254388944|ref|ZP_05004175.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197702662|gb|EDY48474.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 470

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/397 (12%), Positives = 94/397 (23%), Gaps = 33/397 (8%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TLVE            A V +   +++A  ELR       G      P   +        
Sbjct: 92  TLVEAVAERVAAGADPARVLVLTFSRKAAVELRDRMALRLGG--ARGPQATTFHSFCYAL 149

Query: 89  FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
             A             +S  ++ + +  L+    +   D               +     
Sbjct: 150 VRAHQDADLFAETLRLLSGPEQDVMVRELLTGQLDLEADGFDGHR---WPDELRACLTTR 206

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             A  +  ++            L           W  AA FL          L       
Sbjct: 207 GFADEVRAVLARSRELGLGPRSLARFAARTGRPDWRAAASFLAEYLDV----LDMQGVLD 262

Query: 207 PVG--YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                ++  L+   A          + +     + PA  RL++ +A    G  ++   D 
Sbjct: 263 YAELVHRAVLLAERAGPAPDFPYDTVFVDEYQDTDPAQVRLLTALAG--GGRTLVAFGDP 320

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +            +   +                 +  DV  L           
Sbjct: 321 DQSIYAFRGADVNGILDFPATFRHPDG--------------RPADVAVLTTSRRSGAALL 366

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
                       + +    +  ++     +    V          E  ++A  LR +  E
Sbjct: 367 GATRLLTRRMPLTRLPADKVRAHRELAATRPGGRVETYTFPTPSAELDNVADILRRAHLE 426

Query: 385 NKKKS----ALITADRNLARRVKLELTRFGINIDISA 417
           +         L+ A       V+  LT  G+ ++   
Sbjct: 427 DGVPWHGMAVLVRAGARSIPAVRRALTAAGVPLETDG 463


>gi|332283342|ref|YP_004415253.1| putative nuclease/helicase [Pusillimonas sp. T7-7]
 gi|330427295|gb|AEC18629.1| putative nuclease/helicase [Pusillimonas sp. T7-7]
          Length = 1119

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 98/834 (11%), Positives = 211/834 (25%), Gaps = 85/834 (10%)

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            ++R + +            D ++ L   S     ++    I LA       +  E     
Sbjct: 291  LRRRVTIKEGFEAKAVYKDDFLRWLNAASESEDWVAMLAGIRLAPREGYTDEQHEVLRLL 350

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
             E L     +    +   A       S+     L+ L  +      +  +     H    
Sbjct: 351  IEALWLAAAQLNLRFTEAAEVDFTEISQR---ALLALGHADEPTDLLLALDTAIRH---- 403

Query: 226  TKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
                I+I     +  +   L+  +       +G  +    D       +           
Sbjct: 404  ----ILIDEFQDTSQSQIDLLERLTSGWQQGDGRTLFLVGDPMQSIYRFRKADVGCFLKV 459

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                        +  +L D    +   V  +      ++ +        +    S   N 
Sbjct: 460  KEQGL--GDITLTALELTDNFRSQANLVDWVNATCGPVFPKENHGGLGAIIYTPSVPFND 517

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNL 398
             +                  +  +   EA SIAI L               A++   R  
Sbjct: 518  GLDGISAEYHPVWLRKEDADDTGDSVLEAESIAIKLAKEALLKYPDSEHPVAILVRARTH 577

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
               +   L +  I       + L +      L  L  A+    D +A  ++++ PL    
Sbjct: 578  LDGIVHRLAQQNIPCRAVELVSLRSRQVVIDLAQLARALSHDGDRLAWLSVLRSPLCGLT 637

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                +     +                                 T VP   +     D+ 
Sbjct: 638  LNSLHALLGADLT-------------------------------TTVPALLTAWLARDEA 666

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                + D   + +    +   +  +T G +  + W +     L                 
Sbjct: 667  GQPGIEDDEARRLRHAASVLLDTGNTSGAMPFAAWLETRWQAL-----GGADIYHGASDR 721

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
             + + L  L  ++   G        + +  +                  + ++   +S+ 
Sbjct: 722  NDAERLLRLIEELAPYGGLNPVALEDRLAKLYAA--------PSSSGRAVEVMTIHKSKG 773

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
            L F+++IL GL++           F     Q  L     +           +A   +   
Sbjct: 774  LEFESVILAGLHKRPRADTAPLMRFEMGGGQLLLGPIKHKASDEHDPVSTYLAEREKKRA 833

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
                  +  +    +R  Q+L ++G     D ++ +         +L    K P    P+
Sbjct: 834  AY--ETDRLLYVALTRARQQLHLIGVVGLDDKMQIKPPAGSSLLGRLWEHIKTPDV--PE 889

Query: 759  PFPPLEAQPRTYSFSEIKQLIN------DPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                      T + S  + L+                +             D +  GT+ 
Sbjct: 890  ASELGSDAGLTATASGGRLLVRMTPDSLPKVPASVAAVGTGTPWQWRPGSGDESVIGTVA 949

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H  +  L K+ +     +       +      +  L  H       +      + +E E 
Sbjct: 950  HAWLERLGKEGMAAWPTQRLDQTLPVFRKQLARAGLAEHALDASAQVLRDTLVATVESER 1009

Query: 873  -KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID--LLKSGFVDITDYKTGDN 923
                  + +               + L+G    ID  + +     + DYKTG  
Sbjct: 1010 GAWLLGVARAHREWSL--------LDLSGRVSVIDLAISQEHDWLVVDYKTGVP 1055


>gi|262404647|ref|ZP_06081202.1| exodeoxyribonuclease V gamma chain [Vibrio sp. RC586]
 gi|262349679|gb|EEY98817.1| exodeoxyribonuclease V gamma chain [Vibrio sp. RC586]
          Length = 1123

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 111/963 (11%), Positives = 241/963 (25%), Gaps = 132/963 (13%)

Query: 49  IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
           I V +    Q L+       G  + +      L      +    +L         +    
Sbjct: 10  ILVQSPGMSQWLKMALASELGVAANLE---FPLPATFIWQMFTQVLPDVPQRSAFNKEAM 66

Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE----K 164
              L  L+     KL D  +    +  L      +    LA+ +ADI D           
Sbjct: 67  SWRLMELLP----KLLDRDEFQPLQRYLQDDEDDSKRFQLAEKIADIFDGYLVYRPDWIL 122

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN--ASSPVGYQIALMRAEAEH- 221
            WE    +        W        I  +       E               +   A   
Sbjct: 123 SWEAGDEVAEIADQHPWQ------PILWRELYAYTREQGHSIYHRANLYQRFIEQLASGN 176

Query: 222 -LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    + I G +   P     +  +  H +  ++L     H    I +        
Sbjct: 177 FDRSVWPKRLFIFGISALPPRYIDALRAMGEHIDVHLMLTNPCQHYWGDIRDRKYLARVA 236

Query: 281 IT-------------------SSNTTYSTHPQYSLA-------KLLDFLDIKREDVKRLG 314
                                       ++ Q SL         LL  +     D   L 
Sbjct: 237 AQKRKILQINGEQVTIGSEVSPLKGDVESYLQESLHLNHAVGNSLLASMGKMGRDNLYLL 296

Query: 315 NVSNEMY----------GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
             +++                 I    L                 P+I      + +   
Sbjct: 297 AQNDQSELELFIDIQRDSLLHHIQADILHLQEHQDDAKFASSGHKPSIAAQDDSLQIALC 356

Query: 365 DNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDI 415
            +   E   +   L    + +     +   ++  D N        +         I   I
Sbjct: 357 HSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINAYAPYIQAVFGNAPGERFIPFSI 416

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALEL 473
           S       +   +    LL           +  L++ P  +A+F   E+  + AK  +E 
Sbjct: 417 SDRSVDQESPILTAFLQLLALPQSRCLASELLELLETPAIMARFAIDEEEFATAKRWVEE 476

Query: 474 VALRGNKNSYDIMDL---------------KSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
             +R   NS    +                + L+   +  +     +         + + 
Sbjct: 477 AGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAMPAEAGLYELGGQWLAPYNQVQG 536

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           ++  L   +   +  L   ++    T        W    +                L  +
Sbjct: 537 MSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNELLERC-----FSVDLQGELALK 591

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
               +L +L  ++ + G     +      ++T  + G  +  +      +     +  R 
Sbjct: 592 TIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGTRISQRFLAG-QVNFCTLMPMRS 650

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           + F  + L G+N+GV+P N     F  R +Q  +  ++  +          + +    L 
Sbjct: 651 IPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRSRREESRYL-FLEALLSAKEQLY 709

Query: 699 YTRSLRE--NNIPTIASRWLQRLLV-------LGGTDFFDNLKKRGQCYLDWTRK----- 744
            +   R   +N   + S  +  LL        L G +  ++     +     T +     
Sbjct: 710 ISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEHLESDDSGRRLVKHLTTQYPMVP 769

Query: 745 --------LDYTTKQPHYKRPK------------PFPPLEAQPRTYSFSEIKQLINDPYA 784
                     +  +     R +             +    + P      E+++    P  
Sbjct: 770 FSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLLEVSWPMELDLVELQRFWRLPVE 829

Query: 785 VYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
            + +R LK+     +   + D      G   + +  EL++  +          +      
Sbjct: 830 YFFKRRLKVSFEPPLAVMEDDEPFALDGLSAYQLRDELVEDLLACRDGAERDQVVAQFAK 889

Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGIH 897
               +   P        L      +    E+      + +       + +    +   + 
Sbjct: 890 QQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQPLEDE-EIDLRLQPFDDGREVL 948

Query: 898 LTG 900
           L G
Sbjct: 949 LRG 951


>gi|256396908|ref|YP_003118472.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
 gi|256363134|gb|ACU76631.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
          Length = 1124

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 75/808 (9%), Positives = 185/808 (22%), Gaps = 82/808 (10%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN----- 100
            V     T +A  EL     +            + L D   +   +DL  S         
Sbjct: 62  EVLGLTFTNKAAAELAERIRKAL----------RKLEDEELDDPDSDLTESVGEPTVSTY 111

Query: 101 -----PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155
                  +      L L     +  +     +       P  L         LA  +  +
Sbjct: 112 HAYADRLIKEHGLRLGLEPSARLLADATRYQLAVTAVRGPKELRYFKGKVADLADKVLAL 171

Query: 156 IDIIETEEKKWEDLHALKNE-----------------------KYGMWWLLAADFLKIAS 192
              +       E+L   +                                     L    
Sbjct: 172 DGELSEHLVSPEELREHEEAFIGQAESFRDPKSGKAKRGYTDFLKAAEIARQRVELSELV 231

Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMS 247
           + + +  V  +        +   R   E      + +     +++     +  A  R++ 
Sbjct: 232 ERYRDLKVRRDLIDFGDQMVLGARLAEERPEVGAIEREKFKVVLLDEYQDTSVAQRRML- 290

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            V     G  V    D       W   +  + +    +   +   +     L +      
Sbjct: 291 -VGLFGGGHPVTAVGDPCQSIYGWRGASVANLDDFPDHFAKADGARSRGYTLSENRRSGG 349

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
             ++    VS+ +  R   + +     + +D   T                  +   +  
Sbjct: 350 HLLEFANVVSDPLRQRHTGVRELRPSAEKADQGWT-----------------RVGLTETA 392

Query: 368 REEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            EE   +A  +  +        ++ A++    N    +  E+   G+ +++     L   
Sbjct: 393 EEEVRWVARMVADAHYRGGVSLREIAVLVRKGNQIPPLYEEMHAQGLPVEVVGLSGLVHL 452

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
              + L ++L+ + +     ++  L+  P  + G  +  L   +        R       
Sbjct: 453 PEVADLIAMLDVLDEPIANASLVRLLTGPRWRIGARDLALLGMRA-------RELVRDPA 505

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
               ++           +          +  D    +   +          +        
Sbjct: 506 EYADRAGRDRLAEAVAGSDPTEVVSLSDAMADPGPDLPFSEAARVRFARFASEIRILRRR 565

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                +    ++      +V +    KL      E         +   +        A  
Sbjct: 566 LSEPVLDVLHRVISVTGLDVEVAASPKLVAQRSSETLAAFLVRAADFQDLEGDQSVTAFR 625

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG---GLNEGVWPKNTAKN 661
                    +         +  ++ +L   +S+ L +D + +    G  +          
Sbjct: 626 AYLKAAERHERGIDASLPSQGDSVKLLTMHKSKGLEWDAVFVPHLSGAGQKPRESWIGSG 685

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
             L   ++ D          G  A         +       LR   +     R+      
Sbjct: 686 AVLPYPLRGDAEHLPVLDDAGNTAAFKSFKEQAKEYESWEDLRLEYVTVTRPRYYLTASG 745

Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                     +                  +      +P P  +A   +   +E    +  
Sbjct: 746 HWWGPTQKKRRGPDTWLSGLFEHCQDGHGEVVAWAAEPDP--DAVNPSLGATEAHWPVLP 803

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRG 809
                 RR +  + +    +       G
Sbjct: 804 DAEAAERRRIGAEMVVTALRRRQAEAFG 831



 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 74/698 (10%), Positives = 170/698 (24%), Gaps = 67/698 (9%)

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ-KC 355
            A+ L  L ++  ++ R      +  GR  +         T  +  +D + +  P++    
Sbjct: 487  ARDLALLGMRARELVRDPAEYADRAGRDRLAEAVAGSDPTEVVSLSDAMADPGPDLPFSE 546

Query: 356  FSDVALIEADN-----EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
             + V      +      R  +  +   L   +        +  + + +A+R    L  F 
Sbjct: 547  AARVRFARFASEIRILRRRLSEPVLDVLHRVISVTGLDVEVAASPKLVAQRSSETLAAF- 605

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
              +  +    L      +   + L A  +    +  +   +    K     K      +A
Sbjct: 606  -LVRAADFQDLEGDQSVTAFRAYLKAAERHERGIDASLPSQGDSVKLLTMHKSKGLEWDA 664

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
            + +  L G         + S  +     + +  H+P      +    +            
Sbjct: 665  VFVPHLSGAGQKPRESWIGSGAVLPYPLRGDAEHLPVLDDAGNTAAFKSFKEQAKEYESW 724

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                + Y T         +   W   T    +           +           +    
Sbjct: 725  EDLRLEYVTVTRPRYYLTASGHWWGPTQKKRRGPDTWLSGLFEHCQDGHGEVVAWAAEPD 784

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
                   + A    W  +                 + + +      +   F   I     
Sbjct: 785  PDAVNPSLGATEAHWPVLPDAEAAERRRI-----GAEMVVTALRRRQAEAFGEPIGAEPA 839

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
                      +        +                 F   NG        + R    P 
Sbjct: 840  SEEPQAAEQPDAGAGEGALARSGALEP--------VPFFDENGEPMTDLLPAQRAPEAPG 891

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
                                   R     D    L+   +    +R  P P       + 
Sbjct: 892  EPHVIDAEHAATAEDRSAIASWDR-----DLEALLEELKRGDSIQRYAPLP------SSM 940

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S S++ +  NDP         +L         P     GT FH  I  L  ++      +
Sbjct: 941  SASQLLRYRNDPSRF----RRELARPMPQPPQPSAR-LGTKFHAWIESLFGQQALFEYED 995

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
            +     + I    +                 ++  +FL       +      V  P ++ 
Sbjct: 996  LPGAADEEIADEVD---------------LKELQDAFLRTPW---ADSVPAAVEQPFQVV 1037

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            +      + G  D +     G  ++ D+KT  +   +        QL++   A       
Sbjct: 1038 LSGR--VVRGRIDAVYKTPDG-WEVVDWKTSRSQDADPV------QLAVYRLAWAE--MR 1086

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
             +    V+   ++ ++    +       ++   +   +
Sbjct: 1087 GVPLSAVS-AAFVYVRGGETVRPTGLPDREELEELFGD 1123


>gi|108757579|ref|YP_629768.1| ATP-dependent DNA helicase PcrA [Myxococcus xanthus DK 1622]
 gi|108461459|gb|ABF86644.1| ATP-dependent DNA helicase PcrA [Myxococcus xanthus DK 1622]
          Length = 783

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 77/709 (10%), Positives = 185/709 (26%), Gaps = 88/709 (12%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R   +++ G ++  L ++ +      +    +             
Sbjct: 61  RILAVTFTNKAAREMRERLVQLLGAQANEL-VVSTFHSAAAQILRREAEHV--------G 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           + R   +             + +           +   +    A  L + +         
Sbjct: 112 LTRSFVIYDDSDQLNVVKRAMREAGIESMQPREILHRIDQEKNAARLPEHM--------- 162

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
                 +               ++     + ERL   NA       + L+          
Sbjct: 163 -----QVAPGDERG------QLVRKVYAAYQERLRAANAVDFGDLLLLLVTLFRTRPDVL 211

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     + P    L+  +A  P  A ++   D       W      +  
Sbjct: 212 ENYRRRFHHVLVDEFQDTNPVQYALLKQLA-PPPSANLVVVGDDDQSIYRWRGADVDNIL 270

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL       +  +     V  +   R                 
Sbjct: 271 GFP-----RQYPGAKVVKLEQNYRSDQNILDAAHEVIRKNTRRM---------------- 309

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN 397
                E K+ + ++    + L+   +ER E   +A  +     E        A+      
Sbjct: 310 -----EKKLWSERQRGQTLNLMLNRDERAEGQEVARQILALQREGFIKLSSMAVFYRANA 364

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    +   + +G            ++ L  +        +  ++  P    
Sbjct: 365 QSRVLEEALRLARVPYTLVSGRSFYDRAEVRDASAYLRLMVNPRSDADLLRIINIPARGI 424

Query: 458 GFPEKYLS-RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
           G           NA  +           I  L    + R+   +N        ++ +EE 
Sbjct: 425 GDTTVERVTDFANARGVSLYEVLSQPEQIPALNGAAVKRLKGFRNLLESLTAFAQTNEEA 484

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                 +              +  K         SD ++     L+           N  
Sbjct: 485 AGAVDQM-------------LRETKLVETLQAEGSDESQTRAENLREFLGAAQEFDLNRA 531

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                   +       E  +      +  +      I              + ++    +
Sbjct: 532 AAAVAAAANPPSDVPPEVDAAPLTADVPALQAFLEQISLVGEADAEVGDGRVALMTLHAA 591

Query: 637 RLLNFDTLILGGLNEGVWPKNTA---KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
           + L FD + L G+ E V+P + A   ++ FL+ V  +  + + +E+   +    +     
Sbjct: 592 KGLEFDAVFLTGMEENVFPHSRAVKSESTFLNEV--ASADGEPSEEMAEERRLCYVGFTR 649

Query: 694 TRHLIYT-----RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
            R  ++      RSL         SR+L+ +           + +  + 
Sbjct: 650 ARKRLFVSLAQCRSLFGELRYNAPSRFLRDVPPALFGISEQEVPEAPRP 698


>gi|33600423|ref|NP_887983.1| putative nuclease/helicase [Bordetella bronchiseptica RB50]
 gi|33568022|emb|CAE31935.1| putative nuclease/helicase [Bordetella bronchiseptica RB50]
          Length = 1134

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 79/712 (11%), Positives = 168/712 (23%), Gaps = 48/712 (6%)

Query: 228  GPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
              ++I     +      L++T+       +G  +    D       +           + 
Sbjct: 404  RHLLIDEFQDTSQGQIDLLATLTAGWQDGDGRTLFLVGDPMQSIYRFRKAEVGLFLQVAE 463

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                   P     +L D    +   V  +  V  ++  R+       +    S   +   
Sbjct: 464  QGVGQIRP--GFLQLTDNFRSQGGVVDWVNRVFAQLLPRANDADSGAIAYSPSTAFHETA 521

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
                +          A        + A+ +  A     + ++   A++   R+    +  
Sbjct: 522  PGEAVRFHPAWECGDAASAERQAEDIAVGLVRAALAEHEGSRHPVAILVRARSHLGSLTR 581

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L + GI       +PL      + L  L  A+    D +A  ++++ P           
Sbjct: 582  RLAQEGIPCRAVELVPLGLRPVVADLVQLARALAHPADRLAWLSVLRAPWCGLTLTSLQR 641

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                +    V                L+   +     +                    L 
Sbjct: 642  LFGADQQTPVPT--------------LLERALRGAARSEGGQGSLFDAPAPGCLAEQALA 687

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
                + +  +     ++ +  G L ++ W +     L           P      + ++L
Sbjct: 688  PDEYRRLRAVAAILLDRANDAGLLPLAAWLEQLWRRL-----GGPGLYPGSSAASDAESL 742

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
              L  ++   G          +  +              +  T+ I+   +S+ L FDT+
Sbjct: 743  FQLIERLAPHGGLDAGLLDTAVARLFAA------PQATGEQGTVEIMTMHKSKGLQFDTV 796

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ--------AAHDFEMANGTRH 696
            IL GL+            F     +  L                   A      A  T  
Sbjct: 797  ILYGLHRAPRGDQAPLVRFEQSGGRVLLGPIKPRAETEADPVSRYLGAREARRAAYETDR 856

Query: 697  LIYTRSLR-----ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            L+Y  + R                  +            L              D     
Sbjct: 857  LLYVAATRARQRLHLVAHVAVDAASGQARTPASASLLGRLWPHLPVPQPPDVAQDQAAAT 916

Query: 752  PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                     P         +    + L  +  A         +      +       GTL
Sbjct: 917  GEQPALVGEPLRRLAGAGLASLAARTLPREAAAGAYGGGQGAEHPSWQLEAGYDAAVGTL 976

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
             H  +  +        + +   +    +     +  +P                S L+ E
Sbjct: 977  AHAWLARIGGDGPQHWSADALAVRLPAMRRQLTRAGIPAGQADAAAQAVLDTLQSTLDDE 1036

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
                   +        +  +      ++   D     + G   I DYKTG  
Sbjct: 1037 RGRWLLGQARA---RREWPLIDAAGRVS-VIDLALSTEDG-WLIVDYKTGRP 1083


>gi|197286157|ref|YP_002152029.1| exonuclease V subunit gamma [Proteus mirabilis HI4320]
 gi|194683644|emb|CAR44568.1| exodeoxyribonuclease V gamma chain [Proteus mirabilis HI4320]
          Length = 1125

 Score =  103 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 95/744 (12%), Positives = 193/744 (25%), Gaps = 86/744 (11%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+ +  E  G  + I      L      +    +L         S   
Sbjct: 34  VILVQSPGMSQWLQIQLAESLGIAANIR---YPLPATFIWEMFTRVLSGIPKESAFSKDA 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK-- 165
              +L  L+  +     D          L           LA  +AD+ D          
Sbjct: 91  MTWKLMALLPNY----LDDPAFKPLRHYLKDDEDKRKLHQLAGRVADLFDQYLVYRPDWL 146

Query: 166 --WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ---IALMRAEAE 220
             WE+   +       +W         A + +TE L +        YQ     L  A   
Sbjct: 147 SAWENDQLIDGLSDNQYWQKTLWL---ALQRYTEDLAQPKWHRANLYQQFISTLNDAPVG 203

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
            L       I I G +       + +  +  H    ++      +    I +       N
Sbjct: 204 ALAHCFPSRIFICGISALPQVYLQALQAIGRHTEIYLLFTNPCRYYWGDIQDPKFLARLN 263

Query: 281 ITSSNTTYSTHPQYSLA-------------------KLLDFLDIKREDVKRL------GN 315
                     H                          LL       +D           +
Sbjct: 264 SRKPRHYQQLHELPWFKDEQNASTLFNEEGEQNVGNPLLASWGKLGKDNLYFLSELEYSD 323

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN---------IQKCFSDVALIEADN 366
           V +             L  D  D+ +   +   + +         I      +    + +
Sbjct: 324 VLDAFVDIPRDNLLHQLQADILDLEDFSQIGQTLEDYQSSEKKRIIANDDRSLTFHASHS 383

Query: 367 EREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDISA 417
            + E   +   L   L+++     +   ++ AD +        +         I   IS 
Sbjct: 384 PQREVEVLQDQLLHLLEQDADLLPRDIIVMVADIDSYTPYIQAVFGNAPAERYIPFAISD 443

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRAKNALELVA 475
                         +LL           +  L++ P     F   E  L   +  +E   
Sbjct: 444 RKARQVHPVLQAFITLLELPQSRFTAEQVLALLEVPALAAHFAIFENELKLLRRWVEESG 503

Query: 476 LRGNKNSYDIMDL-----------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
           +R   +  ++                L+   +    ++   P       +E   L   L 
Sbjct: 504 IRWGLDDENVASFLLPVTGKNTWEFGLLRMLLGYAMDSEAGPWQGVLPYDESSGLVAELA 563

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
            H+      L T    +       ++ +W  +    +      +      L      +  
Sbjct: 564 GHLADF---LYTLSEWRTRLSETRNLEEWLDIGQQLVDAFFDTDEETELVLAL--ITQQW 618

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             +    +E     +   +   D +T   D E +  +     +L     +  R + F  +
Sbjct: 619 QKVIKNGLEAHYQHEIPLVLIRDELTVRFDDEKISQRFLAG-SLNFCTLMPMRSIPFKAV 677

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRS 702
            L G+N+G++P+N      L   + ++   +   K      + F  A  +    L  +  
Sbjct: 678 CLLGMNDGIYPRNIQP---LGFDLMAEKRRRGDRKRRDDDRYLFLEALSSAEKYLYISYI 734

Query: 703 LRE--NNIPTIASRWLQRLLVLGG 724
            +   ++     S  ++ L    G
Sbjct: 735 GKSIRDDRECNPSVLIKELQDYIG 758


>gi|294789488|ref|ZP_06754724.1| exodeoxyribonuclease V, gamma subunit [Simonsiella muelleri ATCC
           29453]
 gi|294482568|gb|EFG30259.1| exodeoxyribonuclease V, gamma subunit [Simonsiella muelleri ATCC
           29453]
          Length = 1122

 Score =  103 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 84/745 (11%), Positives = 192/745 (25%), Gaps = 74/745 (9%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
             ++   L     V+        P   A   I V ++   + +     +  G  + I   
Sbjct: 10  LEDLAEMLATLHAVQPV------PSSFAPEQIVVQSQGMRRFINQYLAKKQGIAANI--Q 61

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL- 136
                          +  +  LNP  + + R     RL+ ++++      +     + L 
Sbjct: 62  FSLPAGFSFRLMRETMPDTPELNPFDTEVMRW----RLLDLFQSDEFQQDEFQAARTVLH 117

Query: 137 -SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
             L      A  LA  LAD+ D        W          +    +      +I     
Sbjct: 118 TYLQNGDYAAYQLAGQLADVFDQYLVYRPNW------IETWHKGQLVDGLSDEQIWQAPL 171

Query: 196 TERLVELNASSPVGYQIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
              L +   ++P   Q+   +    ++          + G     P    L+  ++    
Sbjct: 172 WRYLDDGRQTAPHRVQLWYNLMNILDNPPDWLPERFFVFGIATLAPMYLELLIRLSKMRE 231

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             I            +    ++        + +   HP      LL  L  +  D     
Sbjct: 232 VHIFALNPSAEYWGQVIEP-SQILDKSEILDLSLQGHP------LLASLGKQGRDFFDAL 284

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC-----------------FS 357
             ++     S    + F       ++     +    N Q                     
Sbjct: 285 AEADVAVDVSAYDDEYFSGSLLHQLQRDIQTQTLPENSQWREINQTDSENSLDYLKHHDR 344

Query: 358 DVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------T 407
            + +  A +   E   +   L   LD+N        A++T            +      +
Sbjct: 345 SIQIHSAHSPLRELQILKDQLLELLDKNPNWRPHDIAVLTPHIEPYAPYLQAVFGQETGS 404

Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF-----PEK 462
              +   +S             L  +L+ +    +   +  ++ + +    F        
Sbjct: 405 GQALPYSLSDVKLSRQQPFLYALEQVLDLLTSRFEVDKLLGVLDNEIILQKFDLTKKDLP 464

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK-----NNTHVPHWQSRLSEEDK 517
            +      L +     ++      D + L   +   ++                      
Sbjct: 465 LIHDTVAKLNIHWGANSEQRAQFGDRQRLFTWQQGLERIVLGWMLPENTRQSLWQGMSPW 524

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                 ++ + + +  +     ++        ++ WT+     +  + L        +  
Sbjct: 525 YTRPDYLEILSKFVLLIRVLTKSQQKWQKPADVAIWTERLRELVNQLFLPNDEDRDVIQK 584

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            E  ++LS   ++          +    I  I R ++             +   G +  R
Sbjct: 585 LE--QSLSEWIAESELAHFHHNLSPEVVIQHIKRFLNQSD--EAGFLRGGITFCGMVPMR 640

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + L GLN+G +P+NT    F           +             E     R +
Sbjct: 641 SLPFKVIALIGLNDGDFPRNTKAASFDLIAKHPKKGDRARRDDDRY--LFLEALFSARDV 698

Query: 698 -IYTRSLRE--NNIPTIASRWLQRL 719
              +   ++   +     S  L  L
Sbjct: 699 LYLSFVGKDIRTDEVRAPSTLLNEL 723


>gi|330827919|ref|YP_004390871.1| exodeoxyribonuclease V subunit gamma [Aeromonas veronii B565]
 gi|328803055|gb|AEB48254.1| Exodeoxyribonuclease V, gamma subunit [Aeromonas veronii B565]
          Length = 1122

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 119/988 (12%), Positives = 252/988 (25%), Gaps = 119/988 (12%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            LL   LV   R  PL+        I V +    Q L+ E  +  G  + I         
Sbjct: 11  DLLKELLVSRIRQAPLS-HPFDREQILVQSPGMAQWLKLELAKAFGIAANI--DFPLPAS 67

Query: 84  VVEEKFTADLLLSYNLNP--PVSNIQRLL-ELARLILIWRNKLPDIIKDLYPESPLSLPI 140
            + E FT  L      +P    S   +L+  L  L+                E   +   
Sbjct: 68  FIWEMFTRVLADVPRQSPYNKGSMSWQLMTILPALLERPAFAPLAAYLGGGDEEDSARDP 127

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                  L + +AD+ D        W                ++    +   + W E + 
Sbjct: 128 EQVRLWQLCQKVADLFDQYLVYRPDWIARWEEGEGLSQELAGVSGQDWQP--ELWRELVA 185

Query: 201 ELNASSPVGYQIA-----LMRAEAEHLMKG--TKGPIIIAGSTGSIPATARLMSTVANHP 253
              A SP GY  A      +   A            + + G +   P     +  + + P
Sbjct: 186 RTLALSPSGYHRANLYEEFIHELARTADLPGKLPQRVFVFGISALPPRYVEALLALGSRP 245

Query: 254 --NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                + +     +    + +  T           T     Q     LL  +     D  
Sbjct: 246 EVEVHLFVTNPCRYYWGDLLDRKTLARLETKLKPGTDIETLQGPANPLLASMGKLGRDYL 305

Query: 312 RLG-----------------NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
                               +    +     +        +    +      +    I  
Sbjct: 306 HQLMELEVPQIEAFVDIDEVDAKGNVSLLRAIQKDVLELAERGAGQFDLDSSHHKSPIDP 365

Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL---- 406
               + +        E   +   L    +++     K   ++  D N        +    
Sbjct: 366 ADGSLQIHACHGPMRELEVLHDRLLALFEQDPTLTPKDVVVMMPDVNSYGPYIQAVFGKE 425

Query: 407 ---TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPE 461
               R  I   +S       +       +LL           +  +++ P  L +F   +
Sbjct: 426 KSGARGQIPFAVSDRAASQESPLLQSFLALLRLPNARFGAGELLAILEVPAVLRRFELDD 485

Query: 462 KYLSRAKNALELVALRGN-----------KNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
              ++ +  ++   +R                     L  L    +     +        
Sbjct: 486 DEFNQLRVWVQETGIRWGLDDGYPVRFDLPPMSGNSWLFGLRRMLLGFAMGDGEPVAGIL 545

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
             ++ + +  + L          + +             +++W    +  L+   L +  
Sbjct: 546 PYADIEGQQGLALGKLAWF----VDSLAEFLPRLQQAQPLAEWHACLLALLERFYLADED 601

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
           +   L  +     L    +++ E        A    D +  ++ GE+   +   +  +  
Sbjct: 602 EERQL--QLIRSQLVEWQTRLGEARFEQPITADLLQDYLGSVL-GESRSSQRFLAGQVNF 658

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
              +  R + F  + L G+N+GV+P+  A   F   +M          +         E 
Sbjct: 659 CTLMPMRSIPFKQVCLLGMNDGVYPRTLAPMGF--DLMAVASRRGDRSRRDDDRYLFLEA 716

Query: 691 ANGTRH-LIYTRSL--RENNIPTIASRWLQRL-------LVLGGTDFFDNLKKRGQCYLD 740
               +  L  +      ++N   + S  L  L        VL G +  D+     +    
Sbjct: 717 LLSAQQGLYISYQGFSAQDNSDKVPSVLLAELIDYVRQGFVLVGDEDLDDETSGKRLLNH 776

Query: 741 WT-------------------RKLDYTTKQPHYKRP-----------KPFPPLEAQPRTY 770
                                R   Y         P            P PP   + +  
Sbjct: 777 LMVAHPLTPYSRNYFYPEAGSRLFTYAADWLPALNPVRGAANFQSGELPLPPEWGKEQGL 836

Query: 771 SFSEIKQLINDPYAVYARRILKLD-FIPHFK-KDPDRTDRGTLFHNIITELIKKRINKNT 828
             +E+ +    P   +  R LK+   +     +D +  +   L H  + +L+        
Sbjct: 837 ELAELLRFYRQPTKYFLNRRLKVWFELNEANIEDSEPFELDGLQHYQLKDLLLDAHLAEG 896

Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                  +  +     +      +         K++          +S  +   V I   
Sbjct: 897 DSTERRERLQLTGLLPQGWFGSLLLDDLDAEMGKLADRLRPWIAADESEKQ--AVEIDIS 954

Query: 889 MAIESIGIHLTGFADRIDLLKSGFVDIT 916
           +        L G+ D     + G + + 
Sbjct: 955 LTQG----QLQGWID----TQKGRLLVV 974


>gi|258543653|ref|YP_003189086.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256634731|dbj|BAI00707.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256637787|dbj|BAI03756.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03]
 gi|256640841|dbj|BAI06803.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07]
 gi|256643896|dbj|BAI09851.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22]
 gi|256646951|dbj|BAI12899.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26]
 gi|256650004|dbj|BAI15945.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32]
 gi|256652994|dbj|BAI18928.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656048|dbj|BAI21975.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12]
          Length = 1190

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 82/808 (10%), Positives = 193/808 (23%), Gaps = 93/808 (11%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              A   L+     W            +        +  +  + G       AG  G    
Sbjct: 391  QRALGLLREPGAAWV-MYKLDGGIDHLLLDEVQDTSPEQWRIAGDLTEEFFAGLGGRSED 449

Query: 242  TARL-MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                 +  V ++        G D            ++  +             +     +
Sbjct: 450  EPPRTIFAVGDYKQSIYGFQGADPDSFREWRQKFKKRVQDAHLLWREPELTVSFRSTAPV 509

Query: 301  DFL--DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
              L   +  +     G V         + ++             +  + +        + 
Sbjct: 510  LKLVDAVFADPEAAKGVVEEPGQIMEHITARPGEGGRVELWPLVEAEKEEDIISPWEPAQ 569

Query: 359  VALIEADNEREEAISIAIALRMSLDE----------NKKKSALITADRNLARRVKLELTR 408
                     ++ A ++A  +   L++                L+         +   L  
Sbjct: 570  GNATRQSPRQKLADAVAGYIFRQLNQKPLSGQKPLTPGDVLVLVPRRSPFVGMLVRALKG 629

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
              I +       L+  L    + SL  A+    D + +A ++  PL            A 
Sbjct: 630  HNIPVVTLVRTGLAEHLAVQDMLSLCAALLLPQDDLTLACVLTSPLGGVSDNSLMALAAG 689

Query: 469  NALELVAL---RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                       R               L+ +  Q +      + S         A  L  
Sbjct: 690  REKGEPLWSALRERHAEQSDWKQAWNFLNGLFRQVDYLTPYEFLSAALGPGGARARFLAR 749

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
               +   P+    +           S                   +    W     +T+ 
Sbjct: 750  LGPEAAEPIDELLSAAIRYQDQHPPS------------------LQGFLHWMRHSEETVK 791

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                   ++   + A+  + +     ++                +        L +    
Sbjct: 792  REAEAGGDSVRIMTAHGSKGLQARLVILPDT-------------VGLPRFEERLFWAHDK 838

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
               ++  ++    A +  L+R ++  +  +  E+        +         +     + 
Sbjct: 839  KQNIDVPLYVPRNALSVGLTRSLKDVMRSRVVEE---YNRLLYVALTRAADRLVVCGWKP 895

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------- 758
                   S W +R  +         +  +   +      L+ T ++    +         
Sbjct: 896  GRNVPAES-WYERCRIGFEKAGATEIDFQEGGWSGSMLLLEETPQEEVNPKKSVPTSVEK 954

Query: 759  -------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD------- 804
                   P     A     +  E +  +  P A        L  +P  +   D       
Sbjct: 955  SEDTALLPQWMGTAPLWKPTLPEAESPLARPLAPSKPDDAMLGPLPPVRSPLDIAAVTPA 1014

Query: 805  -----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
                    RG L H+++  L      +     +  + +        E       +I    
Sbjct: 1015 KAREAAFRRGNLVHSLLQFLPACSAEQQPAMAHQWLARPASGLSSHEAAELAQQVIAVLR 1074

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
              +++  F   +   ++      V         + G  + G  DR+ +L +  V + D+K
Sbjct: 1075 LPELADLF---DPSARAEQRLAGV---------AGGQVIVGQVDRLRVLPN-KVLVCDFK 1121

Query: 920  TGD--NPKKETAQKLIDPQLSLEAAALK 945
            TG       E    L   Q++   A L+
Sbjct: 1122 TGRHAPRGVEDTPVLYLRQMAAYRALLQ 1149


>gi|227546869|ref|ZP_03976918.1| ATP-dependent nuclease subunit B family protein [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227212831|gb|EEI80712.1| ATP-dependent nuclease subunit B family protein [Bifidobacterium
           longum subsp. infantis ATCC 55813]
          Length = 1101

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 105/856 (12%), Positives = 225/856 (26%), Gaps = 162/856 (18%)

Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
           I+      + A   L            VL  L   +   +    T       +       
Sbjct: 140 IVELHNDGVSAEEVLALAAHQSNARLSVLGSLLQLVEQRLGKRYTFPGAAHETICAWAQR 199

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
           H       L  F  +   +++ +  ++  ++   MV + S      +  R  D   N + 
Sbjct: 200 HGSNRWFYLYGFAHLNASEMRIVHTLAQYVHLTVMVGAGSDPDYLEALQRRDDGNRNTLS 259

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDE-----NKKKSALITADRNLARRVKLE 405
           +I    +  ++    +   E    A +++  + +                 +   ++  E
Sbjct: 260 SIFASSASTSVCAMPDTTAEVRYAAASIKKFIADNPEISYGDVLVTSRDLGSYQAQIASE 319

Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
            T  GI I+I+A   +     +  +  LL++        +I  +++  +           
Sbjct: 320 FTYQGIPINIAASSTMLDHPFADAILGLLDSATYELQPQSILRILRSGIFSRYLN----- 374

Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                                    L    I   +N  +  +  +   + D   A  L  
Sbjct: 375 -------------------------LTPTAIDDIENQLNSNNPATVWIDTDIPFAAHL-Q 408

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
            I   I         + S     ++           Q +          +    +     
Sbjct: 409 KIRSLIQQAADVFRPRPSATVREALGGMVGFLTEYAQTI-EGSAPVWTVIMNAFDDMVQQ 467

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                  E           +   +   +  +++  +   +S + +L      L  +  +I
Sbjct: 468 LGNDYFAEYVG-------IFARNLASTLAAQSIDSRPVSASAVDVLPMSSP-LHPYRYVI 519

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNL----------------KTAEKYIGQAAHDF- 688
           + G +E   P    +   L    + DL+                  T E+  GQ    F 
Sbjct: 520 VLGCSESQLPAIPHETGLLDDGERLDLSQFLTSQGKTLEAWNVLSGTVERRSGQEPLWFN 579

Query: 689 -EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
             +A+ T+ L  T      N     S ++ +     GT     +    +  +        
Sbjct: 580 GVVASATQQLSMTYPKSLRNAAQACSPYISQ--WETGTSDTSEIIGASKRAVPTVETEYR 637

Query: 748 TTKQPHYKRPKPFPPLEAQPRT--------------YSFSEIKQLINDPYAVYARRILKL 793
              +    R    P    +                  S S I+    +PY  + +  LK+
Sbjct: 638 PLDRELAYRLFTRPDYVHRVYRTHGADPSISTRVFNASVSAIETYYRNPYEYFLKYGLKV 697

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELI----------KKRINKNTPEINHLMKQIIDS-- 841
           +    F    D    GT +H ++   +          +             M+++I    
Sbjct: 698 NVANAF--AFDAALEGTFYHAVLEHAVNAWIERHKNERDLNGLPPQPTATDMQELIADYS 755

Query: 842 ----------------HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS------IE 879
                             E       + +I R L   +    ++   + ++       + 
Sbjct: 756 RLDRGCNQWTVLNEDPRMEVLRSSNRMRMIHRQLVDTLMDFAVDAAAQREALSSAQTMLT 815

Query: 880 KIFVNIPAKMAIESIG-----------------------IHLTGFADRIDL--------L 908
              V         + G                       + + G  DRID          
Sbjct: 816 PTCVEQVFGNVGGTTGAWQSPYSGEQLIGRARDKEIPVALRINGKVDRIDTVIRDTNISR 875

Query: 909 KSGFVDITDYKTGD-----NPKKET------AQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
           +S  + + DYK+        P +             + QL   A+A +  S        V
Sbjct: 876 ESAGIVVLDYKSSARTLFGKPSRNDGGRASNVYYGHELQLFTYASAAQHNS-----GMPV 930

Query: 958 ANLFYIRLKQKFKIDC 973
           A +F++ +K    I  
Sbjct: 931 AGMFFLPIKPSATIRE 946


>gi|85059953|ref|YP_455655.1| exonuclease V subunit gamma [Sodalis glossinidius str. 'morsitans']
 gi|84780473|dbj|BAE75250.1| exodeoxyribonuclease V gamma subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 1132

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 107/969 (11%), Positives = 232/969 (23%), Gaps = 107/969 (11%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL+ G  +     DP  P       I V +    Q ++ E     G  + I 
Sbjct: 11  DLLKTLAAALIAGRPLR----DPFQPE-----VILVQSNGMAQWMQMELAAQFGIVANI- 60

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
                    + + FT  L    + +           +A        +L            
Sbjct: 61  -DFPLPASFIWQMFTRVLPDIPDESAFAKPAMTWRLMA-----LLPRLCQHPDFAVIGDY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
           L            A  +AD+ D        W  L + +  +       A  +     +  
Sbjct: 115 LRDDEDKRKGFQFAARIADLFDQYLVYRPDW--LESWQRGELIDSMGEAQRWQAPLWRAL 172

Query: 196 TERLVELN--ASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVAN 251
                                ++   E   +       + I G +   P   + +  +  
Sbjct: 173 VAETERAGEPLWHRANLYQRFIQTLTESQTRPPGLPDRVFICGISALPPTYLQALQALGR 232

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------- 298
           H +  ++      +    I +                    Q    +             
Sbjct: 233 HIDIHLLFTNPCRYYWGDIRDRAFLARLLHRRRRHYQQQTEQALFRRPEQADALFNELGE 292

Query: 299 ------LLDFLDIKREDVKRLGNVSN--------EMYGRSMVISKSFLPPDTSDMRNTDI 344
                 LL     +  D   L    +               ++S         +      
Sbjct: 293 QQTGNPLLASWGKQGRDNLYLLAQMDGIAEVDAFVEPAEDNLLSLLQRDILMLEDHAVIG 352

Query: 345 LENKIP-------NIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALIT 393
           +  +IP        ++     ++L    + + E   +  +L   + E      +   ++ 
Sbjct: 353 MGPEIPEQGGGKRPLRPDDRSLSLHVCHSPQREVEVLHDSLLAMIAEDPTLRPRDIIVMV 412

Query: 394 ADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
           AD +        +         +   IS               SLL           +  
Sbjct: 413 ADIDRYTPAIQAVFGNTGGDRYLPFAISDRRARHLHPVLPAFLSLLELPRSRFAAEQVLA 472

Query: 449 LVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQ 499
           L++ P    +F   E+ L   +  +    +R   +   +  L        +         
Sbjct: 473 LLEVPALAARFAINEQGLQLLRQWVAESGIRWGLDDDTLRALMLPATGQHTWQFGLTRML 532

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTV 558
                             + +  L+  ++  +  L+   +  ++      S+  W     
Sbjct: 533 LGYAMDSDSGDWQGILPYDESSGLIAGLVGQLAELLMRLRQWRDRLTQPRSLYAWLSCAR 592

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              ++    +      L           L    ++ G           D +   +D E V
Sbjct: 593 EMSEDFFTPDAEAEAAL--ALLENQWQQLLECGLQVGYDQPVPVTLLQDELAARLDQERV 650

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
             +     T+     +  R + F  + L G+N+GV+P+      F   +M          
Sbjct: 651 SQRFLAG-TINFCTLMPMRSIPFRVVCLLGMNDGVYPRTLPPAGF--DLMAQQPRRGDRS 707

Query: 679 KYIGQAAHDFEMANGT-RHLIYTRSLRENNIPT---------IASRWLQRLLVLGGTDFF 728
           +         E      + L  +   R     T           S ++ +   L G D  
Sbjct: 708 RRDDDRYLFLEALMSAQQRLYISFIGRAIQDNTLRYPSVLVSELSDYIDQSFYLPGDDCA 767

Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND---PYAV 785
           D      +  +   +        P    P       A     + S   +   D   P   
Sbjct: 768 DAESSADRVRVHLWQWHSRMPFAPENFLPDSENQSFADEWLPAASAGGEPQPDFVAPLTA 827

Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                L LD +  F + P R            +   +        I+ L +  ++     
Sbjct: 828 PPCEALALDELLRFYRHPVRAWFVQRLAVSFHQTSLELAADEPFVIDGLTRYQLNDRLVN 887

Query: 846 ENLPPHI--DIIWRHLFHKISH--SFLEHEEKIQSSIEKIFVNI----------PAKMAI 891
             +       +  +     +    +F E     Q                      ++ +
Sbjct: 888 ALIDGESTDRLFSQVRAAGLLPYGAFGELYWAKQCQDMAALAEQVRTWRLPETHSLEVDL 947

Query: 892 ESIGIHLTG 900
               + L+G
Sbjct: 948 TLEDVTLSG 956


>gi|296104482|ref|YP_003614628.1| exonuclease V subunit gamma [Enterobacter cloacae subsp. cloacae ATCC
            13047]
 gi|295058941|gb|ADF63679.1| exonuclease V subunit gamma [Enterobacter cloacae subsp. cloacae ATCC
            13047]
          Length = 1124

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 125/1075 (11%), Positives = 281/1075 (26%), Gaps = 148/1075 (13%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +++ AL+   +      DP  P       + V +    Q L+       G  + I     
Sbjct: 11   DVLEALMEFIVERERLDDPFEPE-----MVLVQSTGMAQWLQMSLSRKFGIAANI--DFP 63

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
                 + E F   L       P  S   +     +L+ +  + L      +     L   
Sbjct: 64   LPASFIWEMFVRVLPDI----PEQSAFNKQSMSWKLMALLPDMLTHDEFAML-RHYLHDD 118

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
                    LA   AD+ D         E L   +  +       A  +     K   E  
Sbjct: 119  TDKRKLFQLASRTADLYDQYLVYR--PEWLTRWEAGELVEGLPEAQVWQAPLWKALVEHT 176

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMSTVANHP 253
             +L    P  ++  L +     L   T  P      + I G +   P     +  +  H 
Sbjct: 177  EKLGQ--PKWHRANLYQRFISILENSTDRPARLPSRVFICGISALPPVYLDALKALGKHT 234

Query: 254  NGAIVLPGLDCHIP----TAIW---------------NTITEKSTNITSSNTTYSTHPQY 294
            +  I+      H         W                T+     + +++        Q 
Sbjct: 235  DIHILFTNPCRHYWGDIQDDRWLSRLVTRQRRRLFEERTVPLFKDSASAAQLFDEQGIQN 294

Query: 295  SLAKLLDFLD-IKREDVKRLGN----------------VSNEMYGRSMVISKSFLPPDTS 337
                LL     + R+ +  L +                  + ++     I          
Sbjct: 295  LPNPLLASWGKLGRDYIHMLSDITSSGEGDVDAFVEITPDSLLHNIQSDILDLENRAVMG 354

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALIT 393
                     +    +      + +    + + E   +   L   L    D   +   ++ 
Sbjct: 355  VTAEEFERSDTKRRLDPDDRSITVHVCHSAQREVEVLHDQLLAMLQDDPDLTPRDIVVMV 414

Query: 394  ADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            AD +        +         +   IS      +        +LL+          +  
Sbjct: 415  ADIDSYSPFIQAVFGSATGERYLPYAISDRRARQSHPALQAFVTLLSLPDSRFISEDVLA 474

Query: 449  LVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQ 499
            L+  P+   +F   E+ L   +  +    +R   +  ++ + +       +         
Sbjct: 475  LLDVPVLAARFNINEEGLRYLRQWVNESGVRWGIDDDNVQEFELPPTGQHTWQFGLTRML 534

Query: 500  KNNTHVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                              + +  L  + +    + L+     + +      + +W  +  
Sbjct: 535  LGYAMESSQGEWNEVLPYDESSGLIAELVGHLASLLMQLNRWRRALMQPRPLEEWLPVCR 594

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              L +  L +      +   E      ++  + + +            D +T  +D E +
Sbjct: 595  ELLNDFFLPDSDTEAAMALIE--TQWQAIVDEGVNSHYNEAIPLSLLRDELTLRLDQERI 652

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
              +      + I   +  R + F  + L G+N+GV+P+      F   +M          
Sbjct: 653  SQRFLAGP-INICTLMPMRSIPFKVVCLLGMNDGVYPRALPPLGF--DLMSPAPKRGDRS 709

Query: 679  KYIGQAAHDFEMANGTR-HLIYTRSLRE--NNIPTIASRWLQRL------LVLGGTDFFD 729
            +         E     +  L  +   R   +N     S  +Q L            D   
Sbjct: 710  RRDDDRYLFLEALISAQNKLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDEER 769

Query: 730  NLKKRGQCYLD------------------------WTRKLDYTTKQPHYKRPKPFPPLEA 765
            N  +  Q                                L    K+              
Sbjct: 770  NCDESDQRVKAHITCCHSRMPFDPMNYVASELQSYAQEWLPAAKKEGKAHSDFIQELDAR 829

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
               T +F ++++    P   + ++ L+++F     + PD           +         
Sbjct: 830  PIETLTFEQLQRFWAHPVRAFFQQRLQINFRSEESEIPDAEPFTL---EGLERYQLNLQL 886

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHI--DIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
             N         ++   +     LP     +I+W     ++  +  E   + +        
Sbjct: 887  LNALVEQEDADKLFRRYRAAGQLPYGAFGEIVWEAQCIEM-KALAERVIECRQPGT---- 941

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
                ++ +   GI LTG+     +   G              P   +  +    QL LE 
Sbjct: 942  --SLEIDLNCNGIQLTGWL--TQVQPDGLLRWR---------PSMLSVSQG--LQLWLEH 986

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
                AG        +  +  ++R + +++   +  ++  +      E   + + +
Sbjct: 987  LVYSAGG------NQGESRMFVRKEGEWRFPPMEPEQALHYLSLYIEGYRQGMNK 1035


>gi|172040717|ref|YP_001800431.1| RecB family exonuclease [Corynebacterium urealyticum DSM 7109]
 gi|171852021|emb|CAQ04997.1| putative RecB family exonuclease [Corynebacterium urealyticum DSM
            7109]
          Length = 275

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 92/277 (33%), Gaps = 30/277 (10%)

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
            P P +       S S        P     R I KL              +GTL H ++ E
Sbjct: 8    PQPKVSLDRLALSPSRAGDYQQCPLLYRFRSIDKLPEPKTI-----AQVKGTLVHAVLEE 62

Query: 819  LIKKRINKNT-PEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHEE 872
            L      + T P    ++K       +K     E +P      +      +   + + E 
Sbjct: 63   LHALPREQRTYPVAVKMLKPAWAKMVDKDADLNELVPDEQLYDFLVEARLLVKGYFQMEN 122

Query: 873  KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
                  +   V    +  +   G+ + GF DR+D+  +G V + DYKTG  P    A + 
Sbjct: 123  --PQGFDAHEVEEFVEATLP-NGVPVRGFIDRVDVAANGQVRVVDYKTGKKPPPRFAAQA 179

Query: 933  IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
            +  Q+   A          +   ++  L Y+++     +     + + +  D       +
Sbjct: 180  L-FQMKFYALVYWR--LYDLIPAQL-RLMYLKVADDLVLQPTPAELQYFERD-----LRE 230

Query: 993  NLIEIVTLLQNGE-QPFISHLRLSEKSNIQSEYDHLA 1028
                I+  +Q+G+ QP  S      K      +  L 
Sbjct: 231  LWDSILADIQSGDFQPKTS------KLCDWCAFQELC 261


>gi|150391867|ref|YP_001321916.1| ATP-dependent nuclease subunit AddB [Alkaliphilus metalliredigens
            QYMF]
 gi|251764575|sp|A6TVN9|ADDB_ALKMQ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|149951729|gb|ABR50257.1| ATP-dependent nuclease subunit AddB [Alkaliphilus metalliredigens
            QYMF]
          Length = 1149

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 72/228 (31%), Gaps = 33/228 (14%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK---N 827
            S S +++  N P++ +    L+       +      D G LFH+ + +  K+ +N+    
Sbjct: 776  SVSRLERFANCPFSHFVTYGLRPKERK--EYQLSNPDIGRLFHDSMEQFTKEMVNEEIQW 833

Query: 828  TPEINHLMKQIIDSHFEKENLP--------PHIDIIWRHLFHKI---SHSFLEHEEKIQS 876
                     ++++   ++             H          +I   +   L    K + 
Sbjct: 834  KDLTKEKNDELVEKVIDEMVPDFEHGIMLSTHRYQYLVTRLKRISKRAMWTLTDHVK-KG 892

Query: 877  SIEKIFVNIPAKMAIESIGIH----------LTGFADRIDLL---KSGFVD-ITDYKTGD 922
                +   I   +  +   I           L G  DR+DLL   + G    I DYK+G 
Sbjct: 893  EFVPMGHEIIFGLEGDVPPIIIELANGEKIYLEGRIDRVDLLNDEEDGNYVKIIDYKSGS 952

Query: 923  NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQK 968
                       +  QL +   A L +             +FY ++   
Sbjct: 953  KEFSLSDVYYGLQIQLMVYLDAILSSEEKKHQVEIHPGGIFYFKIDDP 1000


>gi|170023290|ref|YP_001719795.1| exonuclease V subunit gamma [Yersinia pseudotuberculosis YPIII]
 gi|169749824|gb|ACA67342.1| exodeoxyribonuclease V, gamma subunit [Yersinia pseudotuberculosis
           YPIII]
          Length = 1123

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 82/766 (10%), Positives = 184/766 (24%), Gaps = 87/766 (11%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL+    ++N               + V +    Q L+ +  +     + I 
Sbjct: 11  DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANI- 60

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
             +  L           +L         S      +L  L+      L +       +  
Sbjct: 61  --VFPLPATFIWDMFTRVLPDIPKESAFSKEAMTWKLMWLLP----DLLENPLFSPMKRY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191
           LS          LA  +AD+ D            WE    ++       W      L + 
Sbjct: 115 LSDDGDRRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIEGLDDAQQWQA---LLWVE 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249
              +T +L +             +    +  +        + I G +   P   + +  +
Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIHQLLKSDVCPQGLPKRVFICGISALPPIYLQALQAL 230

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------T 290
             H +  ++      +    I +                                     
Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYRESIELSLFRYPQQAEQLFNTD 290

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349
             Q     LL        D   L +  +E+      +             +   LE+   
Sbjct: 291 GEQNLSNPLLASWGRLGRDHMYLLSQIDEIQEVHAFVDIEPDNLLHGIQHDMLELEDHAV 350

Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391
                           +      ++     + + E   +   L   L    +   +   +
Sbjct: 351 IGTTPETLARSDQKRRLDLDDRSLSFHVCHSPQREVEVLQDHLLGLLAADPELTPRDIIV 410

Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
           +  D +              +   +   IS               +LL+          +
Sbjct: 411 MVVDIDSYTPYIQAAFGNAPSERYLPFAISDRKASQAHPALHAFITLLDLPQSRFTAEQV 470

Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497
             L++ P     F   E  L R +  +    +R   +  ++ +L        +       
Sbjct: 471 LALLEVPALATKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWRFGLTR 530

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556
                               + +  L   +   +   L+     +        +S+W  +
Sbjct: 531 MLLGYAMDSTAGDWQGILPYDESSGLAAELAGQLADMLMHLSQWRQQLGQPRELSEWLPI 590

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L      ++     L   E  +    +    I              D +   +D E
Sbjct: 591 CRQLLDTFFDQDNDTEAALVLIE--QQWQKVIGYGIAAQYPDVVPLNLLRDELAARLDNE 648

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + F  + L G+N+GV+P+      F   +M   +    
Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPQGF--DLMAKKVRRGD 705

Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719
             +         E      + L  +   R   +N     S  +  L
Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 751


>gi|315930458|gb|EFV09518.1| hypothetical protein CSS_0434 [Campylobacter jejuni subsp. jejuni
           305]
          Length = 571

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 98/308 (31%), Gaps = 16/308 (5%)

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             +E    +      I +          E I +    I   ++         + ++G LE
Sbjct: 277 EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 334

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694
           SR L FD +IL   NE   PK +    FL+  ++    L + ++        +E      
Sbjct: 335 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 394

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
             +       E       SR+L  L      DFF       + YL+  +      K    
Sbjct: 395 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 447

Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
               P           SFS    L N     Y R IL L       ++    ++G   H 
Sbjct: 448 PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 507

Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
           ++    K   N N         ++  +  +KE    +I  +   +F      F ++E++ 
Sbjct: 508 MLEIYYKNYANNNFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 561

Query: 875 QSSIEKIF 882
            S    + 
Sbjct: 562 FSKGFYVA 569


>gi|315604922|ref|ZP_07879980.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313461|gb|EFU61520.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 1138

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 118/1081 (10%), Positives = 250/1081 (23%), Gaps = 201/1081 (18%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----------SLGDVVEEKFTADLL 94
            AS+     T++A  EL           +  +P ++          +     E   +   +
Sbjct: 64   ASILGLTFTRKAAGELGDRLRARIRLLAEAMPHLRERLDADPVSLTYNSFAERIVSEHGM 123

Query: 95   LSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL 152
                      +S    L  + +++  W N L + +  L   S +              + 
Sbjct: 124  RIGIDPDFSMLSEAGALDMMLQIVEAWPNDLDEELTPLGAVSQVLHLAGEIAEHGYTVSS 183

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
            A         E +          +          FL    + + +R  +L         +
Sbjct: 184  AREALEEFGRELEQVGDTNEDARRLLRANRRRIAFLGPI-EAYQQRKRDLGFLDFSDQLV 242

Query: 213  ALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
               R   E       ++     +++     +      L+S +        V    D +  
Sbjct: 243  LATRIVREAPVVREALREEFRAVLLDEFQDTSVIQMDLLSMLFG---DHAVTAVGDPNQA 299

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               W   +  S          +         L       R  +     V+  +   +   
Sbjct: 300  IYGWRGASASSLESFLERFCSAPATPEQTLTLSTAWRNDRAILDAANRVAAPLREVAAY- 358

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA----IALRMSLD 383
                           +     +            +      E+A+ +A      +R    
Sbjct: 359  --------QEGKCALNAQSPVLVARGGAGGGRVEVAYAPAYEDALGVAVDFVQRMRSRAG 410

Query: 384  ENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
            E    +  A++   R     V   L   GI  +I     L        + + L       
Sbjct: 411  EGGKRRTVAVLCRRRKDFAYVDAALRDAGIPTEIVGLGGLLDQGAVQDVRAALELAHD-- 468

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
                   +   P          L  A         R    +      ++++LD +     
Sbjct: 469  -------VGASPWLARLLAGIDLGAADLMALGDWARVLARAEGASAHQAVLLDAVDAPPQ 521

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                   +  +SEE      LL + +      +              ++ +  + T+  +
Sbjct: 522  PGWSAEGRPAISEEAVRRVRLLGERLRAVREGVG------------RTVVEQVERTIRIM 569

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
              +       L         + +S   +   +T      + + ++ +     DG      
Sbjct: 570  GTLDDVIADPLSMGGRAALDEFISVAAAYERDTPGASLGSFLAYLRMADEREDGLEAPLG 629

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLN------------------------------- 650
                  + I+    S+ L +D +++ GL+                               
Sbjct: 630  EPDPRAVQIMTVHASKGLEWDCVVVFGLSDGVFPSHDKRKTVSWLDEPPIDSAWLTDASA 689

Query: 651  -------------------EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
                               EG    + A + ++       L +    +    A      A
Sbjct: 690  LPHPLRGDRADLPPFALDVEGEAKPSAAYSKWMKGHYGRALGVHAEREERRLAYVAMTRA 749

Query: 692  NGTRHLIYTRSLRENNIPTIASRWLQRLLVLG---GTDFFDNLKKRGQCYLDWTR----- 743
               + L+ +   R  +     SR+L            D  D+   R      W R     
Sbjct: 750  RSAQLLVGSWIYRMGSATRQPSRYLMEARDELFGQEPDLVDDSLTRVDDRGVWARGDWRG 809

Query: 744  -------------------------KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                                                + P P   L A       ++I+ L
Sbjct: 810  LGVESVSGAGACLIAPQPDDEEIAQSCAAAASATFPEEPGPSRRLVAGAAAAVEAQIRAL 869

Query: 779  INDPYAVYARRILKLDF--------------------IPHFKKDPDRTDRGTLFHNIITE 818
              D     A   L  D                     +  + +    T    L H+   E
Sbjct: 870  AGDRDVYEALAELGDDPAVRDTVALIEEYHLGLETPVVDLWAERVPATSVSALLHDG-EE 928

Query: 819  LIKKRINKNTPEINHL------MKQIIDSHFEKENLPPHIDIIWRH-------------- 858
              +          + L          ++      +  P  +                   
Sbjct: 929  FARDMRRPMPSRPSSLSALGTVFHAWVERELHLASADPASEAFELATGEDAALAGGDGAD 988

Query: 859  ----------LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908
                         ++  +F        +    + +     + +   G+ + G  D +   
Sbjct: 989  EALLTEGERGRLDRLRANFRAFVATRLAGYRAVAIEEAFSVQV--GGVSVQGRIDAVFER 1046

Query: 909  KSG---FVDITDYKTGDN---PKKETAQKLIDPQLSLE--AAALKAGSFSQIDCRKVANL 960
                     + D+K+G       K         QL L   A A + G   +     VA L
Sbjct: 1047 VGEQGPRFLVVDWKSGAPITAATKPDKIAYFVTQLRLYRRAWAARTGVGPEEVGAMVAFL 1106

Query: 961  F 961
             
Sbjct: 1107 A 1107


>gi|261342241|ref|ZP_05970099.1| exodeoxyribonuclease V, gamma subunit [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315577|gb|EFC54515.1| exodeoxyribonuclease V, gamma subunit [Enterobacter cancerogenus
           ATCC 35316]
          Length = 1124

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 108/973 (11%), Positives = 254/973 (26%), Gaps = 119/973 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +  +   DP  P       + V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERDRLDDPFEPE-----MVLVQSTGMAQWLQMSLSQKFGIAANI--DFP 63

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
                + E F   L       P  S   +     +L+ +  + L      +     L+  
Sbjct: 64  LPASFIWEMFVRVLPDI----PEQSAFNKQSMSWKLMTLLPDMLTHDEFTML-RHYLNDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   LA   AD+ D       +W          +      +    L  A    TE+
Sbjct: 119 TDKRKLFQLASRTADLFDQYLVYRPEWLTAWEAGERVEGLPDAQIWQAPLWKALVEHTEK 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             +        +       + I G +   P     +  +  H +  
Sbjct: 179 LGQPKW-HRANLYQRFISILERATERPARLPSRVFICGISALPPVYLNALRALGQHIDIH 237

Query: 257 IVLPGLDCHIP----TAIW---------------NTITEKSTNITSSNTTYSTHPQYSLA 297
           I+      H       A W                ++     + T++        Q    
Sbjct: 238 ILFTNPCRHYWGDIQDARWLARLVTRQRRRLFEERSVPLFKDSATAAQLFDEDGMQNLPN 297

Query: 298 KLLDFLD-IKREDVKRLGN----------------VSNEMYGRSMVISKSFLPPDTSDMR 340
            LL     + R+ +  L +                  + ++   + I             
Sbjct: 298 PLLASWGKLGRDYIHMLSDITSSGEGDVDAFAEIAPDSLLHNIQIDILDLENRAVMGISS 357

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADR 396
              +  +    +      + +    + + E   +   L   L ++     +   ++ AD 
Sbjct: 358 EEFVRSDGKRLLDPDDRSITVHVCHSPQREVEILHDRLLAMLQDDPTLTPRDIVVMVADI 417

Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 418 DSYSPFIQAVFGSATGERYLPYAISDRRARQSHPALQAFISLLSLPDSRFISEDVLALLD 477

Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDI--MDLKSLVLDRIATQKNNTHVPH 507
            P+    F   E+ L   +  +    +R   +  ++   +L                + +
Sbjct: 478 VPVLAARFDVNEEGLRYLRQWVNESGVRWGLDDDNVQEFELPPTGQHTWRFGLTRMLLGY 537

Query: 508 WQSRLSEEDKELA------VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                  E  E+        L+ + +    + L+     +     +  + +W  +    L
Sbjct: 538 AMESHHGEWNEVLPYDESSGLIAELVGHLASLLMQLNRWRRELMQSRPLVEWLPVCREML 597

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
               L +      +   E  K   ++  + + +            D +T+ +D E +  +
Sbjct: 598 NAFFLPDDETEAAMALIE--KQWQAIIEEGVNSHYSEAVPLSLLRDELTQRLDQERISQR 655

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + I   +  R + F  + L G+N+G++P+      F   +M +        +  
Sbjct: 656 FLAGP-INICTLMPMRSIPFRVVCLLGMNDGIYPRALPPLGF--DLMSAQPKRGDRSRRD 712

Query: 682 GQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727
                  E        L  +   R   +N     S  +Q L+   G              
Sbjct: 713 DDRYLFLEALISAQSKLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDEARNCD 772

Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT------------------ 769
               + +       +R           ++           +                   
Sbjct: 773 ESERRVKDHITFHHSRMPFDPVNYARNEQQSYAQEWLPAAKREGTAHTDFIQELEPRLID 832

Query: 770 -YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
             +F ++ +    P   + ++ L+++F     + PD         + +          N 
Sbjct: 833 TLTFEQLSRFWAHPVRAFFQQRLQVNFRSEESEIPDAEPFTL---DGLERYQLNLQLLNA 889

Query: 829 PEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
                  + +   +     LP      I      +   +  E     +            
Sbjct: 890 LVDEEDAQLLYRRYRAAGQLPYGAFGEIVWDTQCQEMTALAERVIACRQPG------QSI 943

Query: 888 KMAIESIGIHLTG 900
           ++ ++  G+ LTG
Sbjct: 944 EIDLDCNGVQLTG 956


>gi|227529821|ref|ZP_03959870.1| ATP-dependent nuclease subunit B [Lactobacillus vaginalis ATCC
           49540]
 gi|227350305|gb|EEJ40596.1| ATP-dependent nuclease subunit B [Lactobacillus vaginalis ATCC
           49540]
          Length = 1258

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 85/810 (10%), Positives = 222/810 (27%), Gaps = 95/810 (11%)

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
            + S   +                P +S I   +  +++      +L     ++      
Sbjct: 74  QVLSFSRLAWFLLRDTPAFQT---PRISKIGMTMLTSQVAQEHAQELHLYASEI------ 124

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWED----LHALKNEKYGMW---WLLAADFLK 189
                        + L + ++ +++     +D    L  ++ ++       WL     ++
Sbjct: 125 -------KRPGFIQKLTEQLEELKSANISADDFSVILEQIQQDQSSGANRVWLTKMHDIE 177

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
           I    + E+L   N        + L++    +          I        +  R++  +
Sbjct: 178 IIYHAYEEQLR-QNFLGNNELYLQLVKYLQTNKEVHHMHF-FIDRFAQFTASEQRIVDAL 235

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
             +    +V   LD   P     + +E         ++   +    L KL      + + 
Sbjct: 236 VENGAATMVSLVLDRGYPDQNHPSPSEVPAENDLFYSSAMVY--RRLWKLAQQEPQQIQL 293

Query: 310 VKR-LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                      +      +   F       +  T+  +  +P+       V      N R
Sbjct: 294 QPNVWFATQPRVNDDLQRVDHYFKRYAAGPISTTETSQLTVPSA------VQFYTMANRR 347

Query: 369 EEAISIAIALRMSLD---ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424
           EE   +AI +R  +       +   ++T   +  + +      +  + +       +   
Sbjct: 348 EELEKVAIKIRQLVASGKYRYRDFLVLTRHLDGYQNMISPIFAQNQVPVFDDHERKMDQH 407

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL------SRAKNALELVALRG 478
               +L++L +   +      I  L+K  L         L        A    E   L+ 
Sbjct: 408 PLVILLSTLFSIDQRGYQLGDIMQLLKTWLLVPRLATGELMPIKTFQEAVFTTENWCLKQ 467

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                       L   + A  +          +L+++   +   +V+ I+  +  L   +
Sbjct: 468 AIRGKQDWINSDLWTVKDAEDQREKATTPQVEQLNQQLAIVHNYVVETIVPFLNQLKEAE 527

Query: 539 TNKNSTCGNLSISD---WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           + +       +       T+      Q               ++  +    +  + +E  
Sbjct: 528 SGRELATMLFNFLQQNGVTERLYQWQQY--QSTRDLDLARQPQQVWEKFCQILQEYVEIL 585

Query: 596 SCIKAN-------AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
              + +         ++ +II                  + +  T   +  N   + + G
Sbjct: 586 GEDQLDKENIDDYLEKFNEIIQAGFSAAQYSQIPATLDQVVVSETGIVQSQNKKVVFMIG 645

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA------------HDFEMANGTRH 696
             + V P+    +  L+   +  L     + +    A            H   M +  + 
Sbjct: 646 STDDVMPEVRENDGLLTDQDKQILAPYLDDDFQYLPADMITELNNEPFVHYLGMLSAKQQ 705

Query: 697 LIYTRSLRE-NNIPTIASRWLQRLLVLG--------------GTDFFDNLKKRGQCYLDW 741
           LI+T      ++     S +++ L                  G +         +  L  
Sbjct: 706 LIFTAPQATNDDKELTISPYMRDLAAYLQQPIINSPLVTSKVGRESAQQFISSPEASLSQ 765

Query: 742 T----RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                R++    K        P    + +      ++  QL +D       + L+     
Sbjct: 766 LVRVGRQVRDDQKAVAAPVQMPSAWKKIKQDLILLAKQWQLSSDATDNALGKRLQ----- 820

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKN 827
              +  +  ++G  +HN++ ++        
Sbjct: 821 ---QRLEMVNQGFNYHNVVDDIGATLAQAL 847



 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 69/245 (28%), Gaps = 48/245 (19%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-----KKRI 824
             S S+++    + Y  + +  L+L      +   D    GT FH  +   I     ++  
Sbjct: 863  ASISQLQNFYINQYEYFLKYGLQLQKRDRLEMSSD--RIGTFFHKAMETFINNTRQQQVE 920

Query: 825  NKNTPEINHLMKQIIDSHFE----------KENLPPHIDIIWRHLFHKISHSFLEH--EE 872
             K     +  +++ ID   +          +            H    I  + L+   ++
Sbjct: 921  LKELVADSQELRRFIDEALQAAEKNQPELVRLTESSTQAKFQYHQLRTIVTTMLKTMCQQ 980

Query: 873  KIQSSIEKIFVNIPAKMAIE----------------SIGIHLTGFADRIDLLKSGF---- 912
               +              I                    I+L G  DRID L        
Sbjct: 981  AQYTEARPFKTEAQFG-RIGSPNQVNLKALDYPLASGDRIYLRGRIDRIDRLPKEQLTDL 1039

Query: 913  ------VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFS-QIDCRKVANLFYIR 964
                  + + DYK+        +A   I  QL      L++          ++A   Y+ 
Sbjct: 1040 LQPSDFLTVVDYKSSNHTFDLTSAYYGISLQLLTYLNGLQSNLQELDEPTARLAGALYLH 1099

Query: 965  LKQKF 969
            L    
Sbjct: 1100 LNNPK 1104


>gi|320008691|gb|ADW03541.1| UvrD/REP helicase [Streptomyces flavogriseus ATCC 33331]
          Length = 1174

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 76/692 (10%), Positives = 172/692 (24%), Gaps = 60/692 (8%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90
               +    V     T +A  EL               P +       G+        F 
Sbjct: 67  GTGQVAPEQVLGLTFTNKAAGELAERVRRALVAAGVTDPDVLDPDNPPGEPSISTYHAFA 126

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL  + L   +    RLL  A    +    L +         P   P    +   L  
Sbjct: 127 GRLLTDHGLRIGLEPTSRLLADATRYQLAARVLREA--------PGPYPALTRSFPTLVS 178

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYW 195
           +L  +   +     + E+L     E                       A   L   ++ +
Sbjct: 179 DLLALDAELAEHLVRPEELLEYDTELLRGLETARLTNAELRKIPETAGARRELLGLTRRY 238

Query: 196 TERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                  +              AL R E   L++     +++     +  A   L++ + 
Sbjct: 239 RTAKRSRDLLDFGDQIALSAELALTRPEVGTLLRDEFRVVLLDEYQDTSVAQRLLLAALF 298

Query: 251 NHPNGAI-----VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
               G       V    D       W   +  + +    +  ++     +   L      
Sbjct: 299 GGGGGDGTAGHAVTAVGDPCQAIYGWRGASVANLDDFPHHFPHADGTPATRYSL------ 352

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                      S        ++  +    +     +  +   +     +    V      
Sbjct: 353 -----------SENRRSGGRLLHLANGLAEPLRAMHEGVEALRPAPGAERDGTVRCALLA 401

Query: 366 NEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
              EE   +  +L   +       + A++        R++  L    I +++     L  
Sbjct: 402 THAEEIDWLGDSLAHLVRTGTAPGEIAVLCRTAGDFPRIQAALVARDIPVEVVGLSGLLH 461

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-RAKNALELVALRGNKNS 482
               + L ++   +       ++  L+  P  + G  +  L  R    L      G++++
Sbjct: 462 LPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARVLVHRTAPGDEDT 521

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                L   V      +  +          S   ++  +            L T   +  
Sbjct: 522 DPDRRLADAVEGTDPAEVISLADALDTFLESGGAEDDRLPFSAEARVRFARLATELRDLR 581

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
            +  +  +    ++  T    V L            E       + +            A
Sbjct: 582 RSLADPLMDVLHRVLATTGLEVELSASPHALAARRRETLANFLDVAAGFAAVDGEATLLA 641

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
                      +           +T+ +L   +S+ L +D + + GL  G +P   +++ 
Sbjct: 642 FLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVGGQFPSTRSRDA 701

Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
           + S+       L+     +             
Sbjct: 702 WTSQSQVLPHALRGDAPTLPVLDTFDARGLAA 733



 Score = 63.0 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 88/824 (10%), Positives = 185/824 (22%), Gaps = 66/824 (8%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243
             A+ L+   +          A      + AL+   AE +         +  +  +    A
Sbjct: 369  LAEPLRAMHEGVEALRPAPGAERDGTVRCALLATHAEEIDWLGDSLAHLVRTGTAPGEIA 428

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             L  T  + P     L   D  +     + +                    + A L+  L
Sbjct: 429  VLCRTAGDFPRIQAALVARDIPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLL 488

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
               R  +            R              +  + D               ++L +
Sbjct: 489  TGPRWRIGPRDLALLGRRARV----LVHRTAPGDEDTDPDRRLADAVEGTDPAEVISLAD 544

Query: 364  ADNEREEAISIAI-ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            A +   E+       L  S +   + + L T  R+L R +   L      +  + G+ + 
Sbjct: 545  ALDTFLESGGAEDDRLPFSAEARVRFARLATELRDLRRSLADPLMDVLHRVLATTGLEVE 604

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             +     L +           +A         A       +L  A    + +        
Sbjct: 605  LSASPHALAARRRETLANFLDVAAGFAAVDGEATLLAFLGFLRTAAQYEKGLDNALPGGE 664

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP--------- 533
              +  L +     +                S   ++        +   +           
Sbjct: 665  NTVKVLTAHKSKGLEWDVVAVPGLVGGQFPSTRSRDAWTSQSQVLPHALRGDAPTLPVLD 724

Query: 534  ------LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL------------ 575
                  L  +K           +             +    H   P+             
Sbjct: 725  TFDARGLAAFKAEMKGHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSVFLDA 784

Query: 576  --WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-IDGETVKPKIEKSSTLFILG 632
                   G     +++          A   E  D    L +D   +  +     T+    
Sbjct: 785  LYEHCAAGHGEIEVWADEPGEDEENPALRDEGADQPWPLPLDDTAMARRRAARDTVLAHL 844

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
               +     DT+           +    +                              +
Sbjct: 845  EALAAAPVPDTVPEEYGRTAPGGRPRPAHEPPYDDEPRPFEDDEPPHDEPPYDDADAPYD 904

Query: 693  GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
                       R    P   +     +             +  +    W R LD    + 
Sbjct: 905  DPYPDGEEDPGRAGPPPPRDAPAAPHVPAARTPADAALTPEESRTLASWDRDLDALAGEL 964

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
               R      +     T S +++  L +DP    AR + +    P          RGT F
Sbjct: 965  RRARAAVRDVVVPA--TLSATQLLHLADDPEGF-ARELARPMPRPPQ----PAARRGTRF 1017

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H  +    ++                       E      +         ++      E 
Sbjct: 1018 HAWVESRFEELPLPMLG--------------PDELPGGDENDAEIADERDLAELKEAFER 1063

Query: 873  KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
               +      V IP ++ +      + G  D +        +I D+KT  +   +     
Sbjct: 1064 TSYARRTPHGVEIPFQITLAGR--VIRGRIDAVYRTGD-TYEIVDWKTSRHRTADP---- 1116

Query: 933  IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
               QL++   A        ++    A   Y+R  +  +   +  
Sbjct: 1117 --LQLAVYRLAWAELHGLPLEAV-AATFLYVRTGETSRPTGLPG 1157


>gi|322691506|ref|YP_004221076.1| ATP-dependent nuclease subunit B [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456362|dbj|BAJ66984.1| putative ATP-dependent nuclease subunit B [Bifidobacterium longum
           subsp. longum JCM 1217]
          Length = 1098

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 105/856 (12%), Positives = 225/856 (26%), Gaps = 162/856 (18%)

Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
           I+      + A   L            VL  L   +   +    T       +       
Sbjct: 137 IVELHNDGVSAEEVLALAAHQSNARLSVLGSLLQLVEQRLGKRYTFPGAAHETICAWAQR 196

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
           H       L  F  +   +++ +  ++  ++   MV + S      +  R  D   N + 
Sbjct: 197 HGSNRWFYLYGFAHLNASEMRIVHTLAQYVHLTVMVGAGSDPDYLEALQRRDDGNRNTLS 256

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDE-----NKKKSALITADRNLARRVKLE 405
           +I    +  ++    +   E    A +++  + +                 +   ++  E
Sbjct: 257 SIFASSASTSVCAMPDTTAEVRYAAASIKKFIADNPEISYGDVLVTSRDLGSYQAQIASE 316

Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
            T  GI I+I+A   +     +  +  LL++        +I  +++  +           
Sbjct: 317 FTYQGIPINIAASSTMLDHPFADAILGLLDSATYELQPQSILRILRSGIFSRYLN----- 371

Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                                    L    I   +N  +  +  +   + D   A  L  
Sbjct: 372 -------------------------LTPTAIDDIENQLNSNNPATVWIDTDIPFAAHL-Q 405

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
            I   I         + S     ++           Q +          +    +     
Sbjct: 406 KIRSLIQQAADVFRPRPSATVREALGGMVGFLTEYAQTI-EGSAPVWTVIMNAFDDMVQQ 464

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                  E           +   +   +  +++  +   +S + +L      L  +  +I
Sbjct: 465 LGNDYFAEYVG-------IFARNLASTLAAQSIDSRPVSASAVDVLPMSSP-LHPYRYVI 516

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNL----------------KTAEKYIGQAAHDF- 688
           + G +E   P    +   L    + DL+                  T E+  GQ    F 
Sbjct: 517 VLGCSESQLPAIPHETGLLDDGERLDLSQFLTSQGKTLEAWNVLSGTVERRSGQEPLWFN 576

Query: 689 -EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
             +A+ T+ L  T      N     S ++ +     GT     +    +  +        
Sbjct: 577 GVVASATQQLSMTYPKSLRNAAQACSPYISQ--WETGTSDTSEIIGASKRAVPTVETEYR 634

Query: 748 TTKQPHYKRPKPFPPLEAQPRT--------------YSFSEIKQLINDPYAVYARRILKL 793
              +    R    P    +                  S S I+    +PY  + +  LK+
Sbjct: 635 PLDRELAYRLFTRPDYVHRVYRTHGADPSISTRVFNASVSAIETYYRNPYEYFLKYGLKV 694

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELI----------KKRINKNTPEINHLMKQIIDS-- 841
           +    F    D    GT +H ++   +          +             M+++I    
Sbjct: 695 NVANAF--AFDAALEGTFYHAVLEHAVNAWIERHKNERDLNGLPPQPTATDMQELIADYS 752

Query: 842 ----------------HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS------IE 879
                             E       + +I R L   +    ++   + ++       + 
Sbjct: 753 RLDRGCNQWTVLNEDPRMEVLRSSNRMRMIHRQLVDTLMDFAVDAAAQREALSSAQTMLT 812

Query: 880 KIFVNIPAKMAIESIG-----------------------IHLTGFADRIDL--------L 908
              V         + G                       + + G  DRID          
Sbjct: 813 PTCVEQVFGNVGGTTGAWQSPYSGEQLIGRARDKEIPVALRINGKVDRIDTVIRDTNISR 872

Query: 909 KSGFVDITDYKTGD-----NPKKET------AQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
           +S  + + DYK+        P +             + QL   A+A +  S        V
Sbjct: 873 ESAGIVVLDYKSSARTLFGKPSRNDGGRASNVYYGHELQLFTYASAAQHNS-----GMPV 927

Query: 958 ANLFYIRLKQKFKIDC 973
           A +F++ +K    I  
Sbjct: 928 AGMFFLPIKPSATIRE 943


>gi|87199314|ref|YP_496571.1| ATP-dependent DNA helicase Rep [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134995|gb|ABD25737.1| ATP-dependent DNA helicase, Rep family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 765

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 101/767 (13%), Positives = 198/767 (25%), Gaps = 119/767 (15%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A L   L    R     P   + +     T +A +E+R     + G     +P + +  
Sbjct: 45  TAALTARLANLLRQRLAWP---SEILCVTFTNKAAREMRERVGNLIGPAVEGMPWLGTFH 101

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            +  +                  ++R  EL  L   +     D    L  +  L +    
Sbjct: 102 AIAAKM-----------------LRRHAELVGLQSNFTIIDTDDQLRLLKQ--LVVAEGI 142

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
               W A+ LA +ID  +       DL AL+NE Y         F  +      E L   
Sbjct: 143 DEKRWPARQLAGLIDKWKNRGLNPADLDALENEAYANG--KGQRFYALYQNRLRE-LNAC 199

Query: 203 NASSPVGYQIALMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
           +    + + + + R E E L   +     +++     +       +  +A +     V+ 
Sbjct: 200 DFGDLLMHMLNIFRREREVLEMWQQRFKYVMVDEYQDTNAVQYLWLRLLAQNRKNICVV- 258

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D       W      +      +      P   + +L          +     +  E 
Sbjct: 259 -GDDDQSIYSWRGAEVANILRFEKDF-----PGAKVIRLEQNYRSTPHILGAASGLIAEN 312

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
             R                     L   +         V +I   +  EEA  I   +  
Sbjct: 313 SER---------------------LGKTLWTEVDGGDKVRVIGVWDAPEEARRIGDEIER 351

Query: 381 SLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              E     + A++   +   R ++    + G+   I  G             + L  I 
Sbjct: 352 LEREGAPLDRVAILVRAQFQTRTIEDRFIQIGLGYRIVGGFRFYERAEIRDALAYLRIIA 411

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
              D +A   +   P    G      L R   A  +     +    D  +L +     +A
Sbjct: 412 SPQDDLAFERIYNTPKRGLGDKTLEKLHRHARARSIPLSLASVEILDTDELPARARGTLA 471

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
               +       S+     +    +L +                        ++   +  
Sbjct: 472 ALMRDFGRWRDASKSLVPAELARTILDESGYTAALQAEKTAEAAGRLENLTELARAMEEY 531

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
            T                                             +++ ++ ++D E 
Sbjct: 532 ETLGD------------------------------------------FLEHVSLVMDNEA 549

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
           V         + I+    ++ L FD + L G  EGV+P   + +         +  L + 
Sbjct: 550 V----ADEEKVTIMTIHAAKGLEFDNVFLPGWEEGVFPSQRSLD---------EGGLASL 596

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENN----IPTIASRWLQRLLVLGGTDFFDNLKK 733
           E+    A      A   RH     +           +I SR++  L      +       
Sbjct: 597 EEERRLAYVAITRA--RRHCTILHAANRQIYGQWTSSIPSRFIGELPAEHIEEETTLSGG 654

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
                 +W+ + D           +         R  +     Q   
Sbjct: 655 ASMWRANWSEREDPFAHVAQATPSRGASRGPGWQRAAAQPYNPQPRR 701


>gi|119945194|ref|YP_942874.1| exodeoxyribonuclease V, gamma subunit [Psychromonas ingrahamii 37]
 gi|119863798|gb|ABM03275.1| exodeoxyribonuclease V, gamma subunit [Psychromonas ingrahamii 37]
          Length = 1149

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 94/778 (12%), Positives = 205/778 (26%), Gaps = 97/778 (12%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI--- 74
            ++++ AL+ G  +             AS TI V +    Q L+ E  + TG  + I   
Sbjct: 13  LKDLLVALMQGAKLT---------DPFASETILVQSPGMAQWLQLEIAQSTGISANIDFP 63

Query: 75  LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
           LP        + ++F   L    + +P        + +   I+       +         
Sbjct: 64  LP-----ASFIWQQFKHVLKDVPDKSPF-----NKMSMTWQIMRLLPDCLEDPDFSALLH 113

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL--------LAAD 186
            L   +       L++ +ADI D       +W       +E+    W            +
Sbjct: 114 YLEDDLYLRKRFQLSQKIADIFDQYLVYRPEWIAAWENASEQEISQWHAENTESIPAWLE 173

Query: 187 FLKIASKYWT--------ERLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTG 237
             +  +K W             +  A    G     +   A           I + G + 
Sbjct: 174 DQRWQAKLWKKLTLTIAESFKAQGKAYHRAGLYKDFLDTLATKKTLEHLPKRIFVFGISA 233

Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-----------------TITEKSTN 280
              +  + +  +A H +   +L     +    I +                 +  E    
Sbjct: 234 LPESYLQALLGLAEHCDVHFLLTNPCRYYWADIVDPKLLAKRFAQSRQKLTVSGGEIKNL 293

Query: 281 ITSSNTTYSTHPQYSLA---------KLLDFLDIKREDVKRLGNVSNEMYG-------RS 324
             SS    ++H Q+S +          LL  +     D         +          R 
Sbjct: 294 PDSSWQKDASHLQWSQSNDPDNEVGNPLLASMGKMGRDFLFQLYSLEQQEVDAFVDITRD 353

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD--VALIEADNEREEAISIAIALRMSL 382
            ++             +  + ++    I        + L    +   E   +   L    
Sbjct: 354 SLLHHIQADVLDLQDSSQALSKDPSARISLAPEGNSLTLHLCHSVMREVEILHDNLLAMF 413

Query: 383 ----DENKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSL 433
               +   K   ++  D +        +         I   IS                L
Sbjct: 414 AADNNLTPKDIIVMVPDIDQYAPYVQAVFASVEQNRYIPFSISDVSAQQENPILISFLQL 473

Query: 434 LNAIFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           LN          I  L++ P           E  L +       +    ++ S    DL 
Sbjct: 474 LNLNQTRYTREDILALLEVPAILQRFNLNQDEFVLLQKWINESGIRWGLDEKSAAQWDLP 533

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL----VDHILQCITPLVTYKTNKNSTC 545
            L  +          + +  S    E       +     D + + I  +      +    
Sbjct: 534 RLSQNSWLFGIRRMLLGYAISDTLFEGISAYDEIQGLQGDLLGRFIDFIDALIKLQEGLK 593

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            + + + W       L++   ++      L        + +L     +       +    
Sbjct: 594 QSYNANQWQAFVYQLLEDFYQEDDDNTMVLSL--IRNEMDNLLDHTGQADFTQPISLFVL 651

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
           I+ + + +  +    +      +     +  R + F  + L G+N+G +P+N     F  
Sbjct: 652 IEHLEQHLSDQGNSQRFLAG-QVNFCTLMPMRSIPFKVVCLLGMNDGQYPRNIVPMGFDL 710

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV 721
                    ++  +          + +       +   R+  +N   + S  +  LL 
Sbjct: 711 MAGHRKRGDRSRREEDRYL-FLEALLSAQEKFYISYIGRDINDNSEKMPSVLVSELLN 767


>gi|312963040|ref|ZP_07777526.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas fluorescens WH6]
 gi|311282809|gb|EFQ61404.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas fluorescens WH6]
          Length = 1149

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 103/975 (10%), Positives = 247/975 (25%), Gaps = 96/975 (9%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV- 84
           L   +V   R  PL P  L +    V +    Q L+    E           I +  DV 
Sbjct: 22  LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPQDDDMGGCGIAAAIDVQ 79

Query: 85  ---VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                      ++L  +  PP S + +     RL+ +    +     +      L+    
Sbjct: 80  LPGSFMWQLYRMVLGRDEIPPKSLLDKAPLTWRLMRLLPELINQPHFEPLQRF-LTSDTD 138

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK---IASKYWTER 198
                 LA+ LAD+ D  +     W +  A    +       +          ++ W   
Sbjct: 139 LRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRSGRGESKPLDPANCWQAELWRAL 198

Query: 199 LVELNASSPVGYQIALMRAEAEH------LMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
           L+++        +  + +   E         +G    +I+ G +         ++ +A  
Sbjct: 199 LLDVGEEGMAESRAGVHQRFIERINTLEDAPRGLPSRVIVFGISSLPAQALEALAGLARF 258

Query: 253 PNGAIVLPGLDCHIPTAIWNTIT--------EKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
               + +     H  + I             +             T  Q++   L  +  
Sbjct: 259 SQVLLCVHNPCRHHWSDIVADKDLLRNEYKRQARKAGMPVTLDPQTLHQHAHPLLAAWGK 318

Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD---------------MRNTDILENKI 349
             R+ +  L +  +    R+            S+                   +  E   
Sbjct: 319 QGRDYISLLDSYDDPNSYRAAFRDGRIDLFSESEPTSLLNQLQDDILELRPLNETRERWP 378

Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLE 405
               +  + V    A + + E   +   L            +   ++  D +        
Sbjct: 379 AVELEHDTSVRFHIAHSAQREVEILHDQLLQRFSADPALRPRDIIVMVPDVDSYAPHIRA 438

Query: 406 L-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +           I   ++             +  LL           I  L+  P  +  
Sbjct: 439 VFGQLDRSDPRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSRFPVSEILDLLDVPALRER 498

Query: 459 FP--EKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQ 509
           F   E+ L      +E   +R   N+     L       ++     +        V    
Sbjct: 499 FAIKERDLPTLHRWIEGAGIRWGLNAEQRAGLGLPGDLEQNSWRFGLRRMLLGYAVGTGV 558

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
           +    E  +    L   ++  +  L+    + +      +        +  L  +     
Sbjct: 559 ACNGIEPYDEIGGLDAALIGPLVALLDALHDAHQALSQPAAPQEWGERLQRLMQLFFLPS 618

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
            +  +    +  +   +        G   +       +     +D   +  +    + + 
Sbjct: 619 SEHDDYLLGQLEQLRETWLETCESVGLQDELPLTVVREAWLAGLDQGRLSQRFLAGA-VN 677

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
               +  R + F  + L G+N+G +P+      F           ++  +          
Sbjct: 678 FCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRPGDRSRREDDRYL-LLEA 736

Query: 690 MANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG-----------------TDFFDN 730
           + +    L  +   R   +N    AS  + +L                            
Sbjct: 737 LLSARDQLYISWVGRSIRDNSERPASVLIGQLRDHLASGWHNAQEQPLLEAMTQEHPLQP 796

Query: 731 LKKR----GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
              R    G     + R+     +       +   P   Q    S  +++  + +P   +
Sbjct: 797 FSARYFHEGDALFSYAREWQLLHEAVDAVPTEDELPPHQQEEPLSLGQLQDFLRNPVKHF 856

Query: 787 ARRILK-------LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
             + LK       +          D   R +L  ++++  + +  + +       ++   
Sbjct: 857 FSQRLKVFFEAADVPLADEEPFVLDALQRYSLSDSLLSAALSQPADLDQALNAQALRLQG 916

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
                       +          +   + +      +            ++ E  GI L 
Sbjct: 917 SGLLPMVGFGECLRHELIEPLPDLLQRYQQLLALWPTPHTGAE-----PISFEHQGIALE 971

Query: 900 GFADRIDLLKSGFVD 914
           G+   +     G + 
Sbjct: 972 GWVSGLHRRGDGALL 986


>gi|229493655|ref|ZP_04387440.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229319616|gb|EEN85452.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 353

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 81/319 (25%), Gaps = 24/319 (7%)

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
            R  Q + V                       +                         S S
Sbjct: 27   RHAQMIPVRLFPVSSPPAPTELSDQPHSLPGVSSVELPTPTPTGATSHERPRSRPALSPS 86

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
                    P     R + ++   P          RGT+ H  +  L         P+   
Sbjct: 87   RAGDYKQCPLLYRFRAVDRIPETPTR-----AQVRGTVVHAALEALFALPTGHRVPDRAA 141

Query: 834  LMKQIIDSHFEKENLPPH--IDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPAKM 889
             + +        E+      +       F       +   +  +  +  +     +  + 
Sbjct: 142  ELVRPAWERVSAESPEAADLVPEGELDSFLDEVGKLVATYYTLEDPTRFDAEACEVYVET 201

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
             +E  G+ L GF DRID+  +G V + DYKTG  P +E  +     Q+   A  L     
Sbjct: 202  ELE-NGVRLRGFVDRIDVAPTGEVRVVDYKTGKAP-REFTESKALFQMKFYALVLLR--- 256

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009
                    A L  I L     +    +  +    +       K       +L  G     
Sbjct: 257  --TRGIVPAQLRLIYLASGSILTYAPDHDELIRFERTLSAIWK------AILAAGATG-D 307

Query: 1010 SHLRLSEKSNIQSEYDHLA 1028
               +  +      ++  L 
Sbjct: 308  FRPKPGK-LCDWCDHKSLC 325


>gi|237806834|ref|YP_002891274.1| exodeoxyribonuclease V, gamma subunit [Tolumonas auensis DSM 9187]
 gi|237499095|gb|ACQ91688.1| exodeoxyribonuclease V, gamma subunit [Tolumonas auensis DSM 9187]
          Length = 1130

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 99/894 (11%), Positives = 215/894 (24%), Gaps = 92/894 (10%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            LA+ TI V +    Q L+    +  G  + I      L      +    +L       P
Sbjct: 29  ALAAETILVQSPGMAQWLKQALAQDLGVAANIT---FPLPSSFIWQMFHQVLPEVPQENP 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +    L  L +L+        D +        L+          L + +AD+ D     
Sbjct: 86  YTKPAMLWRLMQLLPQ----CMDDVLFAPLAGYLAEDHDGRRCYQLCQRIADLFDQYLVY 141

Query: 163 EKKWEDLHALKNEKYGM--WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
              W         +      W             W + +      +   +++ L  +   
Sbjct: 142 RPDWIVDWESGGAQGAETQLWQPVL---------WRKLVALTEQQASHLHRVNLFSSFIN 192

Query: 221 HLMKGTKGPI-----IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI----- 270
            L  G    +      + G +   P     +  +  H    ++L     +    +     
Sbjct: 193 TLKAGKPKAVLPQRLFVFGISSLPPHYLEALMALGEHCEVHLLLTNPCRYYWGDLQEENQ 252

Query: 271 --WNTITEKSTNITSSNTTYSTH-----------------PQYSLAKLLDFLDIKREDVK 311
                + +              H                  Q     L+      R+ + 
Sbjct: 253 INQRVLNKLLAQRREQWQQAEQHKPLLPETDWQQLFSDEGEQQGNPLLVSLGKQGRDYLS 312

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI---PNIQKCFSDVALIEADNER 368
            L  +S         I+   L               ++     I      + L    +  
Sbjct: 313 LLAEISAAEIDAFAEINGDSLLHLLQQDLLELQDGTRLRPKRPISASDRSLVLHGCHSPL 372

Query: 369 EEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDISAGI 419
            E   +   L      +     K+  ++ AD N        +         I   IS   
Sbjct: 373 REVEVLHDQLLQRFAADPTLTPKEVVVMVADINRYGPYVQAVFGNATGERYIPFSISDRS 432

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
                       +LL+   +      +  L+  P     F              +     
Sbjct: 433 ATQENPLLQSFLTLLSLPDQRCTATELLELLAVPALLKRFGLAEADLTTLRRWAMESGVR 492

Query: 480 KNSYDIMDLKSLVLDRIA-----TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                    +  +  R         +         +     D      +       +  L
Sbjct: 493 WGLESGDGERFELPPRERHTWSFGLERMLLGFASGNETLFADVAPYTAIEGQNAVKLGQL 552

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK------TLSSLF 588
             +     +    L  +         +  + LD +     L  ++         TL S  
Sbjct: 553 ARFIAQVMALRDELETARPITEWQNLVDRLLLDFYLPQEQLEEDDAAALNLIRSTLQSWQ 612

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            ++ +           + D +   ++      +      +     +  R + F  + L G
Sbjct: 613 QRLSQMQYQEPLPLTVFHDHLQSELNAVRGGQQFLAG-RVNFCTLMPMRAIPFRLVCLLG 671

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--N 706
           +N+G++P++     F     Q     ++  +          +    + L  +       +
Sbjct: 672 MNDGLYPRSMPPLGFDLMADQPRKGDRSRREDDRYL-FLEALLAAQQQLYISYVAHSAID 730

Query: 707 NIPTIASRWLQRLLVLGGTD---FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP---KPF 760
           N   + S  +  L+           D  K   +      + L        Y R       
Sbjct: 731 NRDLMPSVLVTELVEYCQRAFLLPEDEEKAETEQETALHQHLLTGHPLVPYDRRYFSPTV 790

Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
           PP  A   +Y+   +  L     A +    L L      K + +  D    F N +    
Sbjct: 791 PPATADLFSYAAEWLPALTPTGQAGFFDARLSLPEELQGKPEIELADWLRFFRNPVAGFF 850

Query: 821 KKRINKNTPEINHLMKQI------------IDSHFEKENLPPHIDIIWRHLFHK 862
           ++R+     E    +++             +     +         +W+     
Sbjct: 851 RRRLRVQFVEREAALEETEPFWLDKLQQYQLRERLLRYQRLDVDQAVWQARLLA 904


>gi|261749623|ref|YP_003257309.1| hypothetical protein BPLAN_563 [Blattabacterium sp. (Periplaneta
            americana) str. BPLAN]
 gi|261497716|gb|ACX84166.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
            americana) str. BPLAN]
          Length = 900

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 156/435 (35%), Gaps = 49/435 (11%)

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP---FL 664
            I  + I  E +      S  + ++G L S   + +T I+  +NEG+ P NT +N     +
Sbjct: 471  IYQQFIKTEKISYIQRNSKGIHLIGFLGSYFESVETTIMTSVNEGIIPPNTEENYYKTLI 530

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTR-SLRENNIPTIASRWLQRLLVL 722
               ++   +L +++K     +H F      ++++     +  +       SR++ ++ ++
Sbjct: 531  PNDIRKKFHLSSSQKNENFYSHHFRNLLENSKNIYLIYKNKPDELNSGEKSRFIHQIEMI 590

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDY-TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                   ++K+R    L  + K+   +               E      S S I     +
Sbjct: 591  SN----FSIKERKNHPLILSTKISPISPIVIKKSNSMIQRLYELATHGLSPSSIHLYNYN 646

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----KNTPEINHLMK 836
            P   Y +++L L+     +K   + + G + H I+  L                +    +
Sbjct: 647  PLIFYYKKVLGLN----IEKISLKQEIGKIIHKILEVLYHPIKGNFITIDGIDTMKKNYE 702

Query: 837  QIIDSHF-EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI---FVNIPAKMAIE 892
             II     E +  P    ++   + +    +F+  EEKI     KI    +       ++
Sbjct: 703  SIIKKIISENKKNPEGKSLLINSIVNNYIKNFISWEEKIFHKGHKIFIKELECKVSTLLD 762

Query: 893  SIG---IHLTGFADRIDLLKSGFVDITDYKTGDNP------KKETAQKLI-DP------Q 936
                  ++L G  DRID    G   I DYK G +            +K+  DP      Q
Sbjct: 763  IGSNKKVNLYGIIDRIDE-CDGTTRILDYKIGISKINKIHISLNKIEKIFQDPHYGNIMQ 821

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK----KYSADELSEKSLK 992
            L +         F     +    + ++   +K KI+ I         + + +   ++ L 
Sbjct: 822  LLIYMYL----WFKSFHKKNPPVIAFVS-PEKNKINSIQTIPINFFHQITYENYIKEFLP 876

Query: 993  NLIEIVTLLQNGEQP 1007
             L+  +  + + + P
Sbjct: 877  YLMNRIYEILDPKIP 891


>gi|148826408|ref|YP_001291161.1| exodeoxyribonuclease V subunit gamma [Haemophilus influenzae
           PittEE]
 gi|229846001|ref|ZP_04466113.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae 7P49H1]
 gi|148716568|gb|ABQ98778.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae PittEE]
 gi|229811005|gb|EEP46722.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae 7P49H1]
          Length = 1121

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 119/984 (12%), Positives = 249/984 (25%), Gaps = 144/984 (14%)

Query: 39  LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94
           L P        I V +   +Q L+ E  + TG  + +   +P        + +   A  L
Sbjct: 24  LPPEDPFQQDIILVQSPNMVQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
            +  L  P      +  L RLI I+  K  +    L      S          L+  +AD
Sbjct: 78  PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135

Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + D       +W             + +   +       +       K   + W   +V+
Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNNTLFAQIQGNTKWQGELWRALVVD 195

Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                  A+         +   A+    K     I I G      A   ++  +++  + 
Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297
            +            I +   +   +            Q   +                  
Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315

Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                          +                 Y  +                    LEN
Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIKSNSLLGQLQSQILHLEN 375

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
           K  NI K    + L    +   E   +   L    +++     K   ++ AD N      
Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPNLTPKDVVVMVADINQYTPYI 435

Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             +          I   +S        +  S   +LL           +  L+  P  + 
Sbjct: 436 QAVFGQKNGGAPQIPFSLSDNKLSENDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495

Query: 458 GFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            F           E                G   +     L+ ++L     ++       
Sbjct: 496 RFNISLADLPLVREWVADSGIRVGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                S   K      + H    ++ L       +      SI  W ++    L +  + 
Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQAH------SIEKWQEILTALLSDFFVR 609

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624
                  +++ +         +++ E    +        ++I  +I     +        
Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTLHFTEKLQAEVIADVITMKLEDAPNSLKFL 663

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           +  +     L  R + F  + L G+N+  +P+    N F           +         
Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722

Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNL---------- 731
               E     R     +   R   +N P   S  + +LL        +N+          
Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQKENVLTVIEHPMTA 781

Query: 732 -------------KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                        +     +L    + D       +       P + +        +   
Sbjct: 782 FSPDNFKYNEKFTRSFATKWLPIA-QFDTAASNSEFAVTMTENPEKIEEVEL--DSLVSF 838

Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMK 836
           + +P   +  + L + F    ++  D                   ++      ++ +L +
Sbjct: 839 VENPVKFFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYSLNNDLIYLDE 887

Query: 837 QIIDSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-- 892
           Q    +F +  +   +            I  + LE +EKI    E    +I   +A++  
Sbjct: 888 QNFADYFRQAEVKGVLPRAEFGKVYAENIRDNVLEFKEKIADLGEPKQASIDFNIAVDWQ 947

Query: 893 --SIGIHLTGFADRIDLLKSGFVD 914
             +  I L G+ D +    S  + 
Sbjct: 948 NENQKIRLFGYMDALFGDDSQVIH 971


>gi|183597801|ref|ZP_02959294.1| hypothetical protein PROSTU_01130 [Providencia stuartii ATCC 25827]
 gi|188022556|gb|EDU60596.1| hypothetical protein PROSTU_01130 [Providencia stuartii ATCC 25827]
          Length = 1124

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 86/746 (11%), Positives = 201/746 (26%), Gaps = 89/746 (11%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           E++  L+   +       P          I V +    Q L+ E  +  G  + I     
Sbjct: 11  ELLKELIAHLMENEPLSHPFEQE-----IILVQSPGMSQWLQIELAKRFGIAANI---YY 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L      P  S   +     +L+ I    + +   +      L   
Sbjct: 63  PLPATFIWDMFRRVLPDI---PKESAYTKQAMTWKLMKILPEVIDEDEFEPL-RHYLHND 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKYGMWWLLAADFLKIAS 192
           +       LA  +AD+ D       +W       E ++ L   +    W     +L++  
Sbjct: 119 LDKRKLHQLAGRVADLFDQYLVYRPQWIEKWQQNELINGLGTNQL---WQKRL-WLRLV- 173

Query: 193 KYWTERLVELNASSPVGYQIALMRAE--AEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
             +T+ L +           + +      + +       I I G +   P   + ++ +A
Sbjct: 174 -AYTDSLGQSPW-HRANLYQSFIDKLSTTQGVRDALPKRIFICGISSLPPVYLQALNAIA 231

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------- 297
            H +  ++      +    I +            +     H                   
Sbjct: 232 EHTDIHLMFTNPCRYYWGDIHSHAFLAKLQKRKLHHYIDKHEISRFKIDEHAQGLFNAEG 291

Query: 298 ------KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS------KSFLPPDTSDMRNTDIL 345
                  LL        D     +  +     S  +          L  D  D+ N   L
Sbjct: 292 EQELANPLLASWGKLGRDNLYFISQIDGANEISAFVDTDRSCLLEHLQQDILDLENHAQL 351

Query: 346 ENKIPN---------IQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALI 392
              + +         +      V      + + E   +   L    +++     +   ++
Sbjct: 352 GTTLTDYNTSQNKRVLTLSDQSVTFHSCHSAQREVEVLQDKLLALFEQDPSLTPRDIIVM 411

Query: 393 TADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
            +D +        +     ++  I   IS    L           LL+          + 
Sbjct: 412 VSDIDSYTPFIQAVFGNTASKRYIPFSISDRKALQAHPILQAFILLLDLPQSRFSTEQVL 471

Query: 448 TLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIAT 498
           TL++      +F   E+ L   +  +    +R   +  ++  L        +        
Sbjct: 472 TLLEVSAFAARFDIDERELGLLRRWVNESGIRWGLDDDNVRALSLPVIGQNTWEFGLSRM 531

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKNSTCGNLSISDWTKLT 557
                    +         + +  L   +   +  LV T K  +       ++ +W ++ 
Sbjct: 532 LLGYAMDSRYGPWHDVLPYDESSGLAAQLAGKLALLVNTLKEWRTLLDIERTLDEWKEVC 591

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              + +    +      L      +    +      +G   +       D +    D E 
Sbjct: 592 QQLIDSFFHVDGD--AELVLTLVTEQWHKIIQNAQGSGYDEQVPLRLIRDELAVCFDEEK 649

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
           +  +    + +     +  R + F  + L G+N+G++P+       L   + ++   +  
Sbjct: 650 ISQRFLAGA-INFCTLMPMRSVPFKVVCLLGMNDGIYPRTIPP---LGFDLMAEKPARGD 705

Query: 678 EKYIGQAAHDFEMAN--GTRHLIYTR 701
            K      + F  A     + L  + 
Sbjct: 706 RKRRDDDRYLFLEALNSAAQQLYISY 731


>gi|238896337|ref|YP_002921073.1| exonuclease V subunit gamma [Klebsiella pneumoniae NTUH-K2044]
 gi|238548655|dbj|BAH65006.1| exonuclease V gamma subunit [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 1125

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 104/974 (10%), Positives = 244/974 (25%), Gaps = 123/974 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP          + V +    Q L+       G  + I     
Sbjct: 11  DVLEALMEFIVERQRLDDPFQAE-----MVLVQSTGMAQWLQMTLAARFGIAANIE---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         S      +L  L+     +       +     LS  
Sbjct: 63  PLPASFIWDMFVRVLKDIPGESAFSKQSMSWKLMTLLPQHLEED----DFILLRQYLSDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   LA  +AD+ D       +W          +           L  A   +T  
Sbjct: 119 GDKRKLFQLAARVADLYDQYLVYRPEWLMRWEAGQRVEGLGDAQQWQAPLWQALVSYTAE 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             +    +           + I G +   P   + +  +  H +  
Sbjct: 179 LGQPQW-HRANLYQRFISTLEKADEPPAGLPSRVFICGISALPPVYLQALQALGKHVDVY 237

Query: 257 IVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYSLA 297
           ++      +    I                      +        +         Q    
Sbjct: 238 VLFTNPCRYYWGDIKDPAFLAKLLSRQRRHHREARALPLFRDTEQAPGLFNDAGEQDVGN 297

Query: 298 KLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLAGLERYEELDAFVDIAPDNLLHNLQSDILELRNAAVAGQSAEA 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                    +      +++    + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 FAHSRDKRPLTLDDRSLSIHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +             IS      +        +LL+          +  L+  P
Sbjct: 418 YSPYIQAVFGAASGDRWLPWAISDRRARESHPVLQAFITLLSLPDSRFASEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L        +              
Sbjct: 478 VLAARFNITEEGLRYLRQWVNESGVRWGMDDDNVRELDLPATGQHTWRFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L+  ++  +   L+     +        +++W  +    L +
Sbjct: 538 DSREGEWQSVLPYDESSGLIAELVGNLASLLMQLNLWRRGLAPQRPLAEWLPVCRDLLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +      L   E  +   ++    +E     +       D + + +D + +  +  
Sbjct: 598 FFLPDSETEAALALIE--QQWLAVIDSGLEAQYGEQVPLTLLRDELAQRLDQQRISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+      F   +M          +    
Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMSQKPQRGDRSRRDDD 712

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLKK 733
                E        L  +   R   +N     S  +Q L         L G +  D    
Sbjct: 713 RYLFLEALMSAEQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHCLAGDEELDCDAS 772

Query: 734 RGQCYLDWT-----------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
             +     T                         L    +Q         P       + 
Sbjct: 773 EARVKAHITHLHTRMPFDVANFQEDENKSYAREWLAAAGQQGEAHSDFIQPLTAPPIDSL 832

Query: 771 SFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
            F ++ +    P   + ++ L+++          D   T  G   + +  +L+   I + 
Sbjct: 833 PFDQLLRFWQHPVRAFFQQRLRVNFRAEEDDIPDDEPFTLEGLSRYQLNQQLLNTLIEE- 891

Query: 828 TPEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
             +++ + ++               +    R     ++   +   ++ Q           
Sbjct: 892 -QDVSAMFRRFRAAGELPYGAFGELVWETQRLEMQALAERVMAERQQAQ----------S 940

Query: 887 AKMAIESIGIHLTG 900
            ++ ++  G++LTG
Sbjct: 941 MEIDLQCGGLNLTG 954


>gi|288573981|ref|ZP_06392338.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569722|gb|EFC91279.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 1160

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 108/981 (11%), Positives = 245/981 (24%), Gaps = 142/981 (14%)

Query: 70   KKSTILPIIK-SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK 128
             ++ I P+I  S+ +                   + + +  + LA L   W   + +   
Sbjct: 231  HEAVIAPLIAASVEEWRSIHRMWCGPRGILSGLTLGDTKLGIRLAGLRDRWCEDIDEDRY 290

Query: 129  DLYPESPLSLPISPANAIWLAKNLADIIDIIETEE-----KKWEDLHALKNEKYGMWWLL 183
              +                LA ++A ++   + ++          +  L  E    W   
Sbjct: 291  IDFLRDLCEAIKGARG--KLADSIASLLPEEKVKDHRESILSRSFIWNLAEE---GWSQR 345

Query: 184  AADFLKIASKY-------WTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGS 235
              D  +   +        W  R       +     +   RA   +    G    +++   
Sbjct: 346  ELDLTRGLLRLVALCWFCWESRKSGRGLIAFDDMLLHAGRALERNREYAGRFKEVLVDEF 405

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
              +     RL+ +V +  + A +    D       +            S           
Sbjct: 406  QDTNGLQDRLIRSVVSDGD-ARLFLVGDLKQSIYRFRHADLSLFGSYISKARKGGRYVSL 464

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ-- 353
                     +     +  G++  +  G ++      L P      +    +  +   +  
Sbjct: 465  DVSFRTRDVLLDRVNRLFGHIWRDGLGATLHHRYESLRPPVDQPWHGARQDVSVAPWENI 524

Query: 354  --KCFSDVALIEADNEREEAISIAIALR--------------MSLDENKKKSALITADRN 397
              +   D  L   D     A  +A  L                +     +  A++   R 
Sbjct: 525  ILEAGEDEKLSAEDRRDRSASLLAAKLTGMVGEETIWDKAESSARTMRWRDVAILVPSRT 584

Query: 398  LARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L   ++  L   +GI +                  +LL  +F   D +A+A  +  P + 
Sbjct: 585  LFPSIQRVLGDLWGIPLHFEKNTGYYARTEVQDCVALLRCLFDREDHLALAGYICSPFSG 644

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                +                                 R+  +     +         E 
Sbjct: 645  LSLADGS-------------------------------RLLDRSAGKDLSEELRGQYPEI 673

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                    + I          +            ++W +  V       +D  R+  +  
Sbjct: 674  FARLERWRE-IGLVQGASRVMEELVADGAVLDRFAEWKRRGVAANLRRTVDLLREYEST- 731

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                              G+ +   A    + + +    E           + ++    S
Sbjct: 732  -----------------LGNGLSGAASWLGEALRKRAKEEEAGAVGPDEDVVRVMTVHAS 774

Query: 637  RLLNFDTLILGGLNEGVWPKNTA--KNPFLSRVMQSDLN-------------LKTAEKYI 681
            + L F  +++ G +       ++   + +L   +  D               L+   +  
Sbjct: 775  KGLEFPVVVVAGCDSNGKGFPSSLMPSAYLGAALSRDDGGNGDPISRKVHRLLEETAEKE 834

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                  +      R  +      +    +     ++   V   +D   +  +R       
Sbjct: 835  ESERLFYVACTRARDCLMLSGSWDPPEDSWFDMAIRSGEVDKASDVDGDPPERSIE---- 890

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI--LKLDFIPHF 799
                      P                  S +      + PY    R    L L +    
Sbjct: 891  -------RSLPERGPIVTISGSPGGLERISATSWALYRHCPYGWRLRFRQGLDLTWEQPD 943

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
             +     D G+L H I+           + +    +     S    +  P   D   +  
Sbjct: 944  GETGGGPDMGSLAHWILARW------DFSVDGLEKLLSSERSLLPGDLRPIWGDRETKDR 997

Query: 860  FHKISHSFLEHEEKI----QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
                    +  EE            +    P ++ ++   + L G  D +     G   I
Sbjct: 998  LRGWLVDLISSEEGRKLRPLRDSGYLMREAPFRVPLKDGPL-LVGAVDVMWPGDDGAYSI 1056

Query: 916  TDYKT---GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
             DYK    G  P     + L + QL     A+  G           ++   RL+++ + +
Sbjct: 1057 RDYKITLEGGAP-----EGLYEDQLRFYGLAVTLGM-----DASSVDMALWRLRERGRSE 1106

Query: 973  CITNDKKKYSADELSEKSLKN 993
             +         + L+E+  K+
Sbjct: 1107 KVFLSP-FEDWEGLAEEIRKD 1126


>gi|227357277|ref|ZP_03841634.1| exodeoxyribonuclease V gamma chain [Proteus mirabilis ATCC 29906]
 gi|227162540|gb|EEI47529.1| exodeoxyribonuclease V gamma chain [Proteus mirabilis ATCC 29906]
          Length = 1125

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 96/744 (12%), Positives = 193/744 (25%), Gaps = 86/744 (11%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+ +  E  G  + I      L      +    +L         S   
Sbjct: 34  VILVQSPGMSQWLQIQLAESLGIAANIR---YPLPATFIWEMFTRVLSGIPKESAFSKDA 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK-- 165
              +L  L+  +     D          L           LA  +AD+ D          
Sbjct: 91  MTWKLMALLPNY----LDDPAFKPLLHYLKDDEDKRKLHQLAGRVADLFDQYLVYRPDWL 146

Query: 166 --WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ---IALMRAEAE 220
             WE+   +       +W         A + +TE L +        YQ     L  A   
Sbjct: 147 SAWENDQLIDGLSDNQYWQKTLWL---ALQRYTEDLAQPKWHRANLYQQFISTLNDAPVG 203

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
            L       I I G +       + +  +  H    ++      +    I +       N
Sbjct: 204 ALAHCFPSRIFICGISALPQVYLQALQAIGRHTEIYLLFTNPCRYYWGDIQDPKFLARLN 263

Query: 281 ITSSNTTYSTHPQYSLA-------------------KLLDFLDIKREDVKRL------GN 315
                     H                          LL       +D           +
Sbjct: 264 SRKPRHYQQLHELPWFKDEQNASTLFNEEGEQNVGNPLLASWGKLGKDNLYFLSELEYSD 323

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN---------IQKCFSDVALIEADN 366
           V +             L  D  D+ +   +   + +         I      +    + +
Sbjct: 324 VLDAFVDIPRDNLLHQLQADILDLEDFSQIGQTLEDYQSSEKKRIIANDDRSLTFHASHS 383

Query: 367 EREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDISA 417
            + E   +   L   L+++     +   ++ AD +        +         I   IS 
Sbjct: 384 PQREVEVLQDQLLHLLEQDADLLPRDIIVMVADIDSYTPYIQAVFGNAPAERYIPFAISD 443

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRAKNALELVA 475
                         +LL           +  L++ P     F   E  L   +  +E   
Sbjct: 444 RKARQVHPVLQAFITLLELPQSRFTAEQVLALLEVPALAAHFAIFENELKLLRRWVEESG 503

Query: 476 LRGNKNSYDIMDL-----------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
           +R   +  ++                L+   +    ++   P       +E   L   L 
Sbjct: 504 IRWGLDDENVASFLLPVTGKNTWEFGLLRMLLGYAMDSEAGPWQGVLPYDESSGLVAELA 563

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
            H+      L T    +       ++ +W  +    +      +      L      +  
Sbjct: 564 GHLADF---LYTLSEWRTRLSETRNLEEWLDIGQQLVDAFFDTDEETELVLAL--ITQQW 618

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             +    +E     +   +   D +T   D E +  +     +L     +  R + F  +
Sbjct: 619 QKVIKNGLEAHYQHEIPLVLIRDELTVRFDDEKISQRFLAG-SLNFCTLMPMRSIPFKAV 677

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRS 702
            L G+N+GV+P+N      L   + ++   +   K      + F  A  +    L  +  
Sbjct: 678 CLLGMNDGVYPRNIQP---LGFDLMAEKRRRGDRKRRDDDRYLFLEALSSAEKYLYISYI 734

Query: 703 LRE--NNIPTIASRWLQRLLVLGG 724
            +   ++     S  ++ L    G
Sbjct: 735 GKSIRDDRECNPSVLIKELQDYIG 758


>gi|78188736|ref|YP_379074.1| exodeoxyribonuclease V, RecC subunit [Chlorobium chlorochromatii
           CaD3]
 gi|78170935|gb|ABB28031.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Chlorobium
           chlorochromatii CaD3]
          Length = 1127

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 91/927 (9%), Positives = 218/927 (23%), Gaps = 103/927 (11%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V ++   + L  E     G             + + ++    LL S   +       
Sbjct: 64  VIVVQSRGMQRWLSMELAGRFG---VWANGRYPFPNAMVQELFKQLLPSVAQSDAFKKEV 120

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
               + RL+      L ++ + L      +          L++ +AD  D          
Sbjct: 121 MSWRVMRLLPH----LLEMAEFLPLRRYAADDSDGLKLFQLSEKIADTFDQYTLFRPDML 176

Query: 168 DL--HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK- 224
            L        + G  W             W   LVE         +  L R  +    K 
Sbjct: 177 ALWEAGGGVAEGGEAWQPLL---------WRA-LVEGAGLHRGQLRELLFRQLSRSSSKI 226

Query: 225 -GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                 I + G +        L + VA      + L          I +       +   
Sbjct: 227 SELPERITLFGISYLPQFHLELFAAVARLTEVHLFLLSPTQEYWGDIVSRKAMARLSEAE 286

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                  +P      L     I R+  + +  +S+E                   ++   
Sbjct: 287 QALRSEGNPL-----LASLGRIGRDFSEMVLEMSDEALDSQEFYDDPPEDSLLHALQWDI 341

Query: 344 ILENKIPNIQKCF-------SDVALIEADNEREEAISIAIALRMSLDENK----KKSALI 392
           +       + +           V +        E   +  A+   L+ +     +   ++
Sbjct: 342 LHLQGAGEMDETPRLLQPHDRSVQIHACHTPLREVEVLYDAILGLLEAHPHISLRDIIVM 401

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN------------AIFKL 440
           T D          +              ++     +    +                   
Sbjct: 402 TPDIESYSPYIATVFGTAREAGKEGKGVVALPFSIADRRMMHEGEIASALLKLLALHGSR 461

Query: 441 NDFMAIATLVKHPLAKFGFP-EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                +   +  P     F  +    R        +        +    ++L   R  + 
Sbjct: 462 LTASMLFDFLASPPVSRAFGFDAEALRLIRGWIEGSGIRWGMDEEDRRERNLPAYRDHSW 521

Query: 500 KNNTHVPHWQSRLSEE--DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
           +           + EE    +  +   D        L  +     +    +S S+ ++  
Sbjct: 522 RAGLERLLLGYAMPEEEQLFQGVLPYGDIAGSAAEMLGRFAEAVEALERFVSSSEPSRTL 581

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE-----TGSCIKANAIEWIDIITRL 612
               Q   +            E      +   + +       G     + + +   +   
Sbjct: 582 EAWRQQYAMWLTTFFAPDEDSEREFATLATLGEELAEYGINAGFEENISPLVFFTWLRSR 641

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           ++ +           +     L  R + F  ++L G+N+G +P+ +    F     Q   
Sbjct: 642 LEEQEQGLGFMTGG-ITFCAMLPMRSIPFRVVMLIGMNDGAFPRQSRAPSFDLITRQPQK 700

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRL----------- 719
             ++  +   +      + +    L  +   +   +N     S  +  L           
Sbjct: 701 GDRSL-RNEDRYLFLESILSARELLYISYVGQSIRDNSEIPPSVLVSELLDAVRRAFVLP 759

Query: 720 --------------------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
                                         +        L  + +               
Sbjct: 760 NESSIEQHLVVRHRLQPFHHDYFSEHSPLASYSSENYYALIASEQSLQAVPPIRSFISTA 819

Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF---IPHFKKDPDRTDRGTLFHNII 816
                A+ RT    ++    ++P A +  + L +     +   +            + + 
Sbjct: 820 LSEPTAEWRTVQLEQLLHFYDNPSAFFLEQRLGIKPEGLLLPLQDSEPFAVESLERYRLQ 879

Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
            EL++ ++     E    +  +  S       P     +      +    F     +  +
Sbjct: 880 QELLEAQLRGQPAEA---LLPLFKS--RGMLPPAQHGELLFATVMQEVDDFAATLRQHLA 934

Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFAD 903
               +    P ++ IE     + G  D
Sbjct: 935 GEVALA---PLEVDIEVGEFRIVGRLD 958


>gi|78486038|ref|YP_391963.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2]
 gi|78364324|gb|ABB42289.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2]
          Length = 1182

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 108/973 (11%), Positives = 236/973 (24%), Gaps = 141/973 (14%)

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI---QRLLELARLILIWRNKLPDII-- 127
            T+ P++  L  + E    A       L P V +    +  L   + +  W          
Sbjct: 262  TLYPVMPLLQQIAEFAAFAMQNDQPQLKPLVDDPLTKESDLAAWQALGDWILSTQGKFLK 321

Query: 128  ----KDLYPESPLSLPISPANAIWLAKNL--ADIIDIIETEEKKWEDLHALKNEKYGMWW 181
                K  +P             + L   L  ADI             L           W
Sbjct: 322  TVTVKKGFPAGKGENKEQKDAFLALLAELNVADIRGQYAEALVLLSQLPEGHYSD--EQW 379

Query: 182  LLAADFLKIASK---YWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPI 230
                  +++  +   +          +  +    A  +A             +  T   +
Sbjct: 380  QNLRHLIQLLRRTVAHLKLCFQTEGETDFIEVAQAASQALGHELEPTDLAQQLDYTLKHL 439

Query: 231  IIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
            +I     +  A   L+  +    +  +   +    D       +      +         
Sbjct: 440  LIDEFQDTSVAQYDLVKKIVAGWSQEDAHSLFIVGDPMQSIYRFREAEVGNFLQAWKGR- 498

Query: 288  YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                        L  + +    ++     S  +            P  +   +       
Sbjct: 499  ------------LGEVPLTPLSLEVNFRSSKGVVDWVNQTFAKVFPKKSLIEQGAVSYAP 546

Query: 348  KIPNIQKCFSDVALIEA--DNEREEAISIAIALRMSLDENKKKSA--LITADRNLARRVK 403
             +   ++    V    A   +  EEA  I   ++  L   K  +A  ++   R+    V 
Sbjct: 547  AVAFSEEASPAVYTHWALQQSAWEEAADILTLIQERLSTLKTDAAIGVLGRSRSHLMCVA 606

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
            ++L + GI         L          +L  ++  L D  A   L++ PL      +  
Sbjct: 607  IQLKQAGIAFRAVELEGLKDRQEIQDCEALTRSLLHLGDRPAWIALLRSPLVGLSLTDL- 665

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                                           R+  + ++         L ++       L
Sbjct: 666  ------------------------------YRLLGENDDYFQTPVWETLQDKTHSGWQQL 695

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
             D   Q +   +       ++ G+ ++      T      + LD  + + +    +    
Sbjct: 696  SDAGRQQLGRSLPVLEKALNSMGSYALEVLAHET-----WLALDGPQTVESAMALQNVDA 750

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
               +   +          A    D +  L     +    E S  + ++   +S+ L FDT
Sbjct: 751  FWMMLGNLEAQHDVSALTAKGLSDTLETLYA---LPDASEASQKIELMTMHKSKGLEFDT 807

Query: 644  LILGGLNEGVWPKNTAKNPFLS-------------------RVMQSDLNL-------KTA 677
            +IL GL             +LS                   +  Q    L       +  
Sbjct: 808  VILPGLGRPPRSDEKQLLSWLSFKGQHEQSYLVIAPFEQKGKAAQKQPGLANVIKRYEEI 867

Query: 678  EKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
            ++    +   +      +  L    S+  +         L           +       +
Sbjct: 868  KQSYELSRLLYVACTRAKQQLHLFGSVAVSEKAFNGDAALMPKKKSLLECLWSLEAPAFE 927

Query: 737  CYL---DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN---------DPYA 784
              L    +    D T +        P             SE+ +            D   
Sbjct: 928  VLLTDYQFKDVEDNTQELLPKVSRLPLERQGFWQTQREESELVKAARMGVVEDEDTDELL 987

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                       +            G   H +  +  ++ ++     +    ++       
Sbjct: 988  KVDVAAPSATPLSSLHGGVLAKTVGNFVHAVFEQWAQQDLSSWDATLLESQRERYRYGLM 1047

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF--- 901
            +  L   +               L + +   + + +       ++ + +      G    
Sbjct: 1048 QMGLNRELLKTALERVMMSLSHALHNPKVRWA-LSREHTESAVELPLSAKEET--GQSNH 1104

Query: 902  -ADRIDLLKSGFVDITDYKTGDNPKKETAQKLID----------PQLSLEAAALKAGSFS 950
              DR  + +     I DYKT      ++ Q              PQL      L  G+  
Sbjct: 1105 IIDRTFVDEQNTRWIIDYKTSVFDLDKSEQDKKAFLQSQIDVYTPQLERYGQLL--GAIE 1162

Query: 951  QIDCRKVANLFYI 963
                ++V    Y+
Sbjct: 1163 NRPQKRVLYFSYL 1175


>gi|313126059|ref|YP_004036329.1| ATP-dependent exonuclase v subunit beta, helicase and exonuclease
            domain-containing [Halogeometricum borinquense DSM 11551]
 gi|312292424|gb|ADQ66884.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
            domain-containing [Halogeometricum borinquense DSM 11551]
          Length = 1152

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 89/859 (10%), Positives = 215/859 (25%), Gaps = 93/859 (10%)

Query: 182  LLAADFLKIASKYWTERLVELNASSP---VGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238
             L A  L      +   L E N       V     LM +     +      +       +
Sbjct: 314  CLTARDLTAGYAAYERELDERNLIDFDGLVVEAAELMESPVGEEIAARWDYVFCDEFQDT 373

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
                  L+ ++    N   +    D       W      +          +   +     
Sbjct: 374  DRLQFDLVKSLVTDDN---LFVVGDDDQAIYEWRGAHVANITDELDRAFAALSDEPLEEN 430

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
                  I     + +  + +    R    +   +     D      +E    +     S 
Sbjct: 431  FRSRQPILDLANEAIQKLDH----RERHKTLKRVDEPEYDGDTIATVELSDEDDADGASQ 486

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
            +  +     +      A +   + D      AL+    + A  V  E    GI   + AG
Sbjct: 487  LRTVV----QNLLSGAAESFDEAYDPG--DIALLVRKNDHATPVIEEFEDAGIPYQV-AG 539

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
               + ++    +T+ L A+ +  D ++   ++           + L+   + L       
Sbjct: 540  DLATESVGVGTVTAYLKALARPEDEVSWNRVLLMRYRLCDTDLRKLNAGDDPLVDTLRET 599

Query: 479  NKNSYDIMDLKSLVLD------RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
              + ++  D  +           I    + +H+    + ++  +  L+      + Q   
Sbjct: 600  PLDEFEEPDRVAEARKHVTELLAIRDSASLSHLYRELTDVTNIEWYLSEQERRDLAQLED 659

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE------------- 579
             +  Y  +           D  +   +           +                     
Sbjct: 660  VIEQYGDSAVQPPLTPEFIDSLEHYDSLFDESGSSPTSQPDVADDAVNVMTIHKSKGLDF 719

Query: 580  ---------EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
                      G+   S  +      S        + +        ET +      +    
Sbjct: 720  PVVLIPQVTAGEWAPSSRTYDALETSLSDGAEAAFAEDFVERDARETRRVFHVGITRAED 779

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
            +  L+    + D   +  ++E V     ++ P+     Q  L     +  + + A D+  
Sbjct: 780  VLVLQGGSEDDDATDVHPVSESVDEILPSRIPWQPERGQLPLWADVQDC-LPREAVDWTD 838

Query: 691  ANGTRHL-IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
               T  +     ++         +    R+L L        L  R +        L   +
Sbjct: 839  TLATETVGHVGGTVNHAGEELAVAAARDRVLDLATATLNGELSPRAERETLQVASLTDPS 898

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF-------IPHFKKD 802
                               ++S++ +      P + Y   ++                  
Sbjct: 899  TPSPSL-------------SHSYTSLAAYEECPRSHYLDYVVNAFPDYQETTVRSDSGGG 945

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
              + + G LFH+   +  K+ + +            I                      +
Sbjct: 946  VSQREIGLLFHDTAEQAAKQGVKRRGDWYE------ICERLASH----RRAEDALTAAKE 995

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
                + E E     + E I      ++ I+     L G+ D +       + + DYK   
Sbjct: 996  CIDRYFELEL---PNCEIIDAEREFELDIDGHE--LVGYIDAVYRTPDDGLLVIDYK--- 1047

Query: 923  NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
               +       D QL +        +   +    V    Y  +  +      T       
Sbjct: 1048 -ATERHRDLEDDKQLPIYLL-----ACCDLYDEPVTRAGYAYVG-EIGPKVETRTFSDAD 1100

Query: 983  ADELSEKSLKNLIEIVTLL 1001
             + +++   +++   ++  
Sbjct: 1101 LEAVTDDVTESMTR-ISEF 1118


>gi|220931258|ref|YP_002508166.1| hypothetical protein Hore_04130 [Halothermothrix orenii H 168]
 gi|219992568|gb|ACL69171.1| hypothetical protein Hore_04130 [Halothermothrix orenii H 168]
          Length = 864

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/422 (14%), Positives = 120/422 (28%), Gaps = 64/422 (15%)

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
            L+ D LI+   + GV P     +  L+   +++L L+T      +  + F          
Sbjct: 474  LSRDILIVLNASRGVIPSEAGNDFILTDRQRAELGLETINNLRLREKYYFYRHILNSQKT 533

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
               SL+        S ++  L +  G D  +      +      R++             
Sbjct: 534  IIFSLKNLESNLTTSSFVDELRLKYGLDLKEAEITS-RQLPAVIRRIFPAKPAALGMVSS 592

Query: 759  PFP----------PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF-IPHFKKDPDRTD 807
                                + S+     LI+  Y  Y  ++++L        ++     
Sbjct: 593  VSRKEDKLVIETDDFPGNQMSLSYYRYTTLIDCYYKFYLEKLVRLAEDRVVVDREMSPLL 652

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP------PHIDIIWRHLFH 861
             G   H +  E++ ++  +N      +++++I        L       P+   +      
Sbjct: 653  FGNFVHEVFAEVLNRQ-GRNLNVSKEVVEEVIVDKLNSYRLQINNYYLPYYRKVLLPTVR 711

Query: 862  KISHSFLEHEEKIQSSIEKIFV------NIPAKMAI---ESIGIHLTGFADRIDLLKSGF 912
                SF     K +   E + +             I   +   + L G  D I       
Sbjct: 712  DSVISFFRG-LKRRVKGEIVDIKIEWQPEKSKDRVIFNHDFTDVFLNGRVDLIIETSD-T 769

Query: 913  VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR-KVANLFYIRLKQKFKI 971
              I D+KTG            + QL   +  L            KVA   Y  +K  FK 
Sbjct: 770  RFIIDFKTGQ---------GKEDQLDFYSLLLA----PDYGSEKKVAKELYNVMKASFKA 816

Query: 972  DCITNDKKKYSADELSEKSLKNLIEIVTLLQNG---EQPFISHLRLSEKSNIQSEYDHLA 1028
                 +          E+  + + E +     G      + S             +  + 
Sbjct: 817  GAPGTE----------EEFAREISEEIKNFFEGGEYTTIYKSR-------CKDCNWMDIC 859

Query: 1029 RV 1030
            RV
Sbjct: 860  RV 861


>gi|70734237|ref|YP_257877.1| exodeoxyribonuclease V subunit gamma [Pseudomonas fluorescens Pf-5]
 gi|68348536|gb|AAY96142.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas fluorescens
           Pf-5]
          Length = 1139

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 117/972 (12%), Positives = 251/972 (25%), Gaps = 89/972 (9%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI----TGKKSTILPIIKSL 81
           L   +V   R  PL P  L +    V +    Q L+    E      G    I   I   
Sbjct: 11  LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPEVDDGGGCGIAAAIDVQ 68

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                      L+L  +  PP S + +     RL+ +    + +   +      L+    
Sbjct: 69  LPGSFMWQLYRLVLGRDEIPPKSLLDKAPLTWRLMRLLPELIDEPHFEPLQRF-LTHDSD 127

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK---IASKYWTER 198
                 LA+ LAD+ D  +     W +  A    +                  ++ W   
Sbjct: 128 LRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRNGRGETKALTPANCWQAELWRAL 187

Query: 199 LVELNASSPVGYQIALMRAEAEH------LMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
           L+++        +  + +   E          G    +I+ G +         ++ +A  
Sbjct: 188 LLDVGTEGMAQSRAGVHQRFIERINQLEVAPSGLPSRVIVFGISSLPAQALEALAGLARF 247

Query: 253 PNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
               + +     H    I             +             T  Q++   L  +  
Sbjct: 248 SQVLLCVHNPCRHHWADIVADKDLLRHQYKRQARKAGMPQALDPQTLHQHAHPLLAAWGK 307

Query: 305 IKREDVKRLGNVSNEMYGRSMV------ISKSFLPPDTSDMRNTDILENKIPNIQKCF-- 356
             R+ +  L +  +    RS        +     P         DILE +  N  +    
Sbjct: 308 QGRDYINLLDSYDDPNSYRSAFRDGRIDLFSDSQPASMLQQLQDDILELRPLNETRELWP 367

Query: 357 -------SDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLE 405
                    +    A + + E   +   L        D   +   ++  D +        
Sbjct: 368 QVDIQHDQSIRFHIAHSAQREVEILHDQLLARFSAEPDLRPRDVIVMVPDIDSYAPHIRA 427

Query: 406 L-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAK 456
           +        R  I   ++             +  LL           I  L+  P   A+
Sbjct: 428 VFGQLERDDRRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSRFPVSEILDLLDVPALRAR 487

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQ 509
           FG  E  L      +E   +R   N+    +L       ++     +        V    
Sbjct: 488 FGVDEADLPTLHRWIEGAGIRWGMNAEQRAELGLPPELEQNSWRFGLRRMLLGYAVGRSD 547

Query: 510 SRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
           +    E  +    L    I   +  L   +            ++W +     L+   L  
Sbjct: 548 ACDGIEPYDEIGGLDAALIGPLVALLDALQIAYQQLTQPADPAEWGERLHNLLEQFFLAS 607

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
           +     L   +      +        G   +       +     +D   +  +    + +
Sbjct: 608 NEHDDYL-LGQLDDLRENWLETCESVGLQDQLPLTVVREAWLAGLDQGRLSQRFLAGA-V 665

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
                +  R + F  + L G+N+G +P+      F           ++  +         
Sbjct: 666 NFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRPGDRSRREDDRYL-LLE 724

Query: 689 EMANGTRHLIYTRSLRE--NNIPTIASRWLQRLL------------------VLGGTDFF 728
            + +    L  +   R   +N    AS  + +L                    L      
Sbjct: 725 ALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHLASGWRLPDEQDSLLEALTQEHPL 784

Query: 729 DNLKKR----GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                R          + R+     +               Q    S ++++  + +P  
Sbjct: 785 QPFSARYFHDSDTLFSYAREWQVLHQVREELGAVERLEPYVQDEPLSLAQLQDFLRNPVR 844

Query: 785 VYARRILKL--DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
            +  + LK+  + +     D +      L    +++ + +    +  +    ++      
Sbjct: 845 HFFSQRLKVFFEAMEAPLADEEPFVLDALQRYSLSDSLLEAALGDAAQPEQALQAQAQRL 904

Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                LP                  L    +    +    V     +++E  G+ L G+ 
Sbjct: 905 QASGLLPMAGFGECLQRELLEPLPDLLQRYRQLLDLWPTPVTSALPVSLELQGVRLEGWL 964

Query: 903 DRIDLLKSGFVD 914
             +     G + 
Sbjct: 965 SSLHQRADGGLL 976


>gi|320535503|ref|ZP_08035606.1| conserved domain protein [Treponema phagedenis F0421]
 gi|320147642|gb|EFW39155.1| conserved domain protein [Treponema phagedenis F0421]
          Length = 923

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 104/723 (14%), Positives = 218/723 (30%), Gaps = 86/723 (11%)

Query: 361  LIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVK-LELTRFGINIDISA 417
            LI  +N R E  +  + +   L+E  +  +  +   +          E     I  D   
Sbjct: 225  LISFENTRAEIRNTVLRIEQLLNEGVSISEIVVSVPNIKEMMPYLKREFALRSITADFRT 284

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  L+      + + + +A+ +   F ++  L                    AL    ++
Sbjct: 285  GFSLADNQAGFLFSQITDAVDQHYSFESMKAL-----VFNKHIPWADECGARALMSYGIK 339

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
             N       D K        + K +      +    E++KE A   +   +Q    L + 
Sbjct: 340  NN-CVVSWQDEKRYKNVWFESFKISKEENPAE----EDEKEAAKNWIIPFMQMAEKLTSA 394

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
            KT         +  D     +   +    D+      L    +   L   F   + +   
Sbjct: 395  KTFTEIQTAYFTFRD---RFIVEDKFSAEDDMVMSRCLACLRQLSELEEEFKDCLPSSP- 450

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                           +  E   P+ E    + I     +    F    +   N+      
Sbjct: 451  --------YRFFITQLQNEIYVPQNEGLG-IAIFPYRVAAGAPFTYHFVLNCNQNSTCVI 501

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHD-------FEMANGTRHLIYTRSLRENNIPT 710
              K PFL +  +  LN+   +      A         F  A  T       +       +
Sbjct: 502  YKKLPFLRQDKRYLLNVANTDASQAFFAAYAKNGNCFFSFAEQTISSFVIANSNFTQTVS 561

Query: 711  IAS-----RWLQRLLVLGGTDFFDNLKK---------RGQCYLDWTRKLDYTTKQPHYKR 756
              S      +L+ L++  G   F               G+        L  + K      
Sbjct: 562  PPSIDETDSFLEELMMYQGGKAFTQAYSIQKNGFEVWSGRNTEKGFSYLQNSFKHQIAAL 621

Query: 757  PKPFPPLEAQPRTYSF--SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
             +    ++ +        + ++     P   +  R+L ++   +  +  +    G L H 
Sbjct: 622  TERIHAVQFKGSAVLVNQTGLRNFFFCPSYWFLSRVLTINDEQYEAELFNPRYVGILIHE 681

Query: 815  IITELIKKRINKNT-----------PEINHLMKQII--DSHFEKENLPPHIDIIWRHLFH 861
            ++ +L +K   K+T                ++++     S ++     P I+ ++  +F 
Sbjct: 682  VLEKLYQKIKAKDTKFCSANTATYKEWAKDIIQKTAKMRSEYQGPLATPFIESLYSRIFE 741

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
                  L  + +         +    ++  ES GI   G  DR+ +   G   + DYKTG
Sbjct: 742  A-VEYALSFDCEKLDGWLLSKIEE--RIEFESGGIFYEGIIDRVSVSAEGSSVLLDYKTG 798

Query: 922  DNPKKETAQ------KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
              P   +        +L+D Q+ +    L+       +   V + F+I L+ +  +  I 
Sbjct: 799  RRPPASSYTDYEKNGELLDFQMPMYVHLLEHS-----EKELVEHAFFIGLR-EQDVSFII 852

Query: 976  NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL---------RLSEKSNIQSEYDH 1026
            N+K           S +    ++T  Q   Q F + +          ++ ++     +  
Sbjct: 853  NNKAVIDQGRKRSVSREQFSGVMTCFQTSVQDFAAAVKSENFIKPENVTWQTCKACGFKG 912

Query: 1027 LAR 1029
            + R
Sbjct: 913  ICR 915


>gi|298507445|gb|ADI86168.1| ATP-dependent DNA helicase UvrD/REP [Geobacter sulfurreducens
           KN400]
          Length = 739

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 79/723 (10%), Positives = 180/723 (24%), Gaps = 126/723 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R    ++ G +   +P+I +                         
Sbjct: 53  QILAVTFTNKAAGEMRERVEKLVGGE---VPLIATFHSTCARIL---------------- 93

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                E+  L       + D          +   +      + A +LA  ID  +     
Sbjct: 94  ---RREIHHLGYDSSFAIYDDKDSGKLLKEVMAGLGLDEKRFPATSLASAIDDCKNRGLA 150

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH---- 221
            EDL A              + +      + ERL + NA       +  +R   EH    
Sbjct: 151 PEDLPADTF---------TGEVVGRVYAAYQERLKKCNALDFGDLIMLTVRLFEEHPVVL 201

Query: 222 -LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     + P   RL+  +A       V+   D       W     ++  
Sbjct: 202 ERYRDQWRWILVDEYQDTNPIQYRLVRLLAGEHRNLCVV--GDDDQSIYRWRGADIRNIL 259

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +    T            L+      + +   +  +  R+       L  +     
Sbjct: 260 DFEKDFPGVT---------TIKLEQNYRSTRNILAAAGAVVARNRGRKAKTLWSENPPGD 310

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398
                                    +ER+EA  +   +   +      +  A+       
Sbjct: 311 PIVYRRL-----------------ADERDEARFVCREIERYVRRGGDLRDVAVFYRTNAQ 353

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R V+  L   GI   +  G+     +    + + L  +    D +++  ++  P     
Sbjct: 354 SRVVEDALVADGIPYHMVGGMRFYERMEVKDVLAYLRVLANPADEVSLKRIINVP----- 408

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                     +  +  L + R  T  +          LS   + 
Sbjct: 409 ------------------ARGIGPGTVDKISELAVRRGITILDALGEAATGGLLSSAPRG 450

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL-DEHRKLPNLWF 577
                   + +                  L +++ T   +          + R       
Sbjct: 451 KVAAFAAVMERFFA-----------LRDQLPLAELTTRIIEESGYADRLRQERTDEAADR 499

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
               + L +   +   T              + ++     ++       +  ++    ++
Sbjct: 500 LANLQELVAAMEEFERTSDERGLAP-----FLEQVALVSDLERSGTGRESATLMTLHAAK 554

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696
            L F  + + G+ E ++P   +              L   E    +    +      R  
Sbjct: 555 GLEFPMVFMIGMEEKLFPHVRS--------------LDDPEAMEEERRLCYVGMTRARER 600

Query: 697 LIYTRSLREN----NIPTIASRWLQRLL-VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
           L  T + R      +   + SR++  +   L   +        G    D   +     + 
Sbjct: 601 LCLTNARRRRIFGQDQVNMPSRFIADIPRNLLDLEDEWQQPALGSVAPDTAGRGREPARH 660

Query: 752 PHY 754
              
Sbjct: 661 NLA 663


>gi|329122963|ref|ZP_08251534.1| exodeoxyribonuclease subunit V gamma [Haemophilus aegyptius ATCC
           11116]
 gi|327471894|gb|EGF17334.1| exodeoxyribonuclease subunit V gamma [Haemophilus aegyptius ATCC
           11116]
          Length = 1126

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 93/758 (12%), Positives = 185/758 (24%), Gaps = 99/758 (13%)

Query: 39  LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94
           L P        I V +    Q L+ E  + TG  + +   +P        + +   A  L
Sbjct: 24  LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
            +  L  P         L RLI I+  K  +    L      S          L+  +AD
Sbjct: 78  PATALENPFDKDSMTWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135

Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + D       +W             + +   +       +       K   + W   +V+
Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNATLFAQIQGNTKWHGELWRALVVD 195

Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                  A+         +   A+    K     I I G      A   ++  +++  + 
Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297
            +            I +   +   +            Q   +                  
Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRKRYQLNKQDENQPLFSEDQLSQLENAQFDVTYQK 315

Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                          +                 Y  +                    LEN
Sbjct: 316 ENLQLGNLLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
           K  NI K    + L    +   E   +   L    +++     K   ++ AD N      
Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSLTPKDVVVMMADINQYTPYI 435

Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             +          I   +S      +    S   +LL           +  L+  P  + 
Sbjct: 436 QAVFGQKNGDAPQIPFSLSDNKLSESDALVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495

Query: 458 GFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            F           E                G   +     L+ ++L     ++       
Sbjct: 496 RFNISLADLPLVREWVADSGIRVGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                S   K      + H    ++ L       +      SI  W ++    L +  + 
Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQAH------SIEKWQEILTALLSDFFVR 609

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624
                  +++ +         +++ E    +        ++I  +I     +        
Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTLHFTEKLQAEVIADVITMKLEDAPNSLKFL 663

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           +  +     L  R + F  + L G+N+  +P+    N F           +         
Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722

Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL 719
               E     R     +   R   +N P   S  + +L
Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQL 759


>gi|121601965|ref|YP_989213.1| putative DNA helicase II [Bartonella bacilliformis KC583]
 gi|120614142|gb|ABM44743.1| putative DNA helicase II [Bartonella bacilliformis KC583]
          Length = 816

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 88/703 (12%), Positives = 195/703 (27%), Gaps = 118/703 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E++    E+ GK    +P + +                      V  
Sbjct: 92  QILAVTFTNKAANEMKIRIGELVGKTVEGMPWLGTFHSTG-----------------VKI 134

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D +  L  +  L    +  +  W A++LA +ID  + +   
Sbjct: 135 LRRHAELVDLKSNFTILDNDDVLRLLKQ--LIQAENLDDKRWPARSLAMMIDSWKNQGLS 192

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA-----LMRAEAE 220
            E +       +G                +  RL  LNA       +          +  
Sbjct: 193 PEHISESDAHSFGNGVGRKL------YHSYQNRLKSLNACDFGDLLLHPIHIFQHNPDIL 246

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP--GLDCHIPTAIWNTITEKS 278
              +     I++     +  A    +  +A     + V      D       W      +
Sbjct: 247 REYQDKFRYILVDEYQDTNTAQYLWLRLLAQSSTKSQVNLCCVGDDDQSIYGWRGAKIDN 306

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +   +             + ++R        +    +  S    +      +  
Sbjct: 307 ILRFEKDFPPA-----------KIIRLERNYRSTSHILKTASHLISHNQGRLGKTLFSDQ 355

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADR 396
             N +               V +  A +  EE+ +I   +  +        + A++    
Sbjct: 356 SNNEET-------------KVKIHAAWDSEEESRAIGKEIEQTQQSGHSLNQIAILVRAS 402

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
              R  +      G+N  +  G      +      + L  + +  D +A   ++  P   
Sbjct: 403 FQMREFEDRFVALGLNYRVIGGPRFYERMEIRDAMAYLRVVVQPADDLAFERILNTPKRG 462

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G                              +++ L   A +   T     ++      
Sbjct: 463 LGNAALRHLYNSARA-----------------RAIPLFAAAAEIIETDDLKPKAC----- 500

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                          + L +   N +     L  +  T+L  T L +           +W
Sbjct: 501 ---------------SALRSVIENFHRWQDMLKHTPHTELAETILDDSG------YIAMW 539

Query: 577 FEEEGKTLSSLFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
            E+      +    + E    ++   +   +++ ++ ++D ++     E    + I+   
Sbjct: 540 QEDRSPEAPTRLENLKEMIRSMEKFEDLHSFLEHVSLVMDADS----NENMDAVNIMTLH 595

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L FDT+ L G  EG++P   + +         +      E+    A      A   
Sbjct: 596 SAKGLEFDTVFLPGWEEGLFPHQRSLD---------EGGRLGLEEERRLAYVGITRAKKH 646

Query: 695 RHLIYTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            H+ +  + R +     T+ SR+L  L               G
Sbjct: 647 LHIWFVSNRRIHGLWQSTLPSRFLDELPEQHIEVADIETSYGG 689


>gi|39998500|ref|NP_954451.1| ATP-dependent DNA helicase PcrA [Geobacter sulfurreducens PCA]
 gi|39985447|gb|AAR36801.1| ATP-dependent DNA helicase PcrA, putative [Geobacter sulfurreducens
           PCA]
          Length = 739

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 81/722 (11%), Positives = 179/722 (24%), Gaps = 124/722 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R    ++ G +   +P+I +                         
Sbjct: 53  QILAVTFTNKAAGEMRERVEKLVGGE---VPLIATFHSTCARIL---------------- 93

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                E+  L       + D          +   +      + A +LA  ID  +     
Sbjct: 94  ---RREIHHLGYDSSFAIYDDKDSGKLLKEVMAGLGLDEKRFPATSLASAIDDCKNRGLA 150

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH---- 221
            EDL A              + +      + ERL + NA       +  +R   EH    
Sbjct: 151 PEDLPADTF---------TGEVVGRVYAAYQERLKKCNALDFGDLIMLTVRLFEEHPVVL 201

Query: 222 -LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     + P   RL+  +A       V+   D       W     ++  
Sbjct: 202 ERYRDQWRWILVDEYQDTNPIQYRLVRLLAGEHRNLCVV--GDDDQSIYRWRGADIRNIL 259

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +    T            L+      + +   +  +  R+       L  +     
Sbjct: 260 DFEKDFPGVT---------TIKLEQNYRSTRNILAAAGAVVARNRGRKAKTLWSENPPGD 310

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398
                                    +ER+EA  +   +   +      +  A+       
Sbjct: 311 PIVYRRL-----------------ADERDEARFVCREIERYVRRGGDLRDVAVFYRTNAQ 353

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R V+  L   GI   +  G+     +    + + L  +    D +++  ++  P     
Sbjct: 354 SRVVEDALVADGIPYHMVGGMRFYERMEVKDVLAYLRVLANPADEVSLKRIINVP----- 408

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                      +D  S +  R      +         L      
Sbjct: 409 -------------------ARGIGPGTVDKISELAVRRGITVLDALGEAATGGLLSSAPR 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
             V     +++    L         T   +  S +         +   D       L   
Sbjct: 450 GKVAAFAAVMERFFALRDQLPLAELTTRIIEESGYADRLRQERTDEAAD------RLANL 503

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           +E       F +  +               + ++     ++       +  ++    ++ 
Sbjct: 504 QELVAAMEEFERTSDERGLAPF--------LEQVALVSDLERSGTGRESATLMTLHAAKG 555

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + + G+ E ++P   +              L   E    +    +      R  L
Sbjct: 556 LEFPMVFMIGMEEKLFPHVRS--------------LDDPEAMEEERRLCYVGMTRARERL 601

Query: 698 IYTRSLREN----NIPTIASRWLQRLL-VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             T + R      +   + SR++  +   L   +        G    D   +     +  
Sbjct: 602 CLTNARRRRIFGQDQVNMPSRFIADIPRNLLDLEDEWQQPALGSVAPDTAGRGREPARHN 661

Query: 753 HY 754
             
Sbjct: 662 LA 663


>gi|21223553|ref|NP_629332.1| ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
 gi|9714472|emb|CAC01314.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
          Length = 1222

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 70/688 (10%), Positives = 167/688 (24%), Gaps = 56/688 (8%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90
               +    V     T +A  EL         +     P +       G+        F 
Sbjct: 108 GTGQVAPEQVLGLTFTNKAAGELAERVRTALIRAGVTDPDVIDPDHPPGEPAISTYHAFA 167

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL  + L   +    RLL  A    +    L +         P   P    +   L  
Sbjct: 168 GRLLTDHGLRLGLEPTSRLLADATRYQLAARVLREA--------PGPYPALTRSFADLVS 219

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYW 195
           +L  +   +     + EDL A                           A   L      +
Sbjct: 220 DLLALDGELAEHLVRPEDLRAWDAGLLDTLDGVRLSNADLRKVPEAAAARRELADLVIRY 279

Query: 196 TERLVELNASSPVGYQIALMRA----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
                  +            +     E   +++     +++     +  A   L++ +  
Sbjct: 280 RAAKRRQDLLDFGDQIALSAQLAGLPEVGRVLRDDYRVVLLDEYQDTSVAQRILLAGLFG 339

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
              G  V    D       W   +  + +    +  ++     +   L            
Sbjct: 340 GGTGHPVTAVGDPCQAIYGWRGASVANLDDFPEHFAHADGRPAARQAL------------ 387

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                S        ++  +    +     +  +   +     +    V         EE 
Sbjct: 388 -----SENRRSGGRLLDLANGLAEPLRAMHAGVEALRPAPGAERDGMVRCALLSTHAEEI 442

Query: 372 ISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
             IA ++   +   +   + A++         ++  L    + +++     L      + 
Sbjct: 443 DWIADSVAHLVRTGKAPGEIAVLCRTATDFAEIQGALVARDVPVEVVGLSGLLHLPEVAD 502

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           L ++   +       ++  L+  P  + G  +  L   +  L +   R   +      L 
Sbjct: 503 LVAVCEVLQDPGANASLVRLLSGPRWRVGPRDLALLGRRARLLVSHARVEGDDDPDRRLA 562

Query: 490 SLVLDRIATQK---NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
             V     ++     +      ++ L     +  +            L T          
Sbjct: 563 EAVEGVDPSEVISLADALDTFLETPLDGTGDDDGLPFSADARVRFARLATELRELRRALS 622

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
           +  +    ++       V L            E       + +            A    
Sbjct: 623 DPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDVAASFAAGDGEATLLAFLGF 682

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
                  +           +T+ +L   +S+ L +D + + GL  G +P    +  + ++
Sbjct: 683 LRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGTFPSGQGREKWTAQ 742

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGT 694
                  L+   + +   A         
Sbjct: 743 GKVLPHGLRGDAETLPDVASWDARGLKA 770



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 82/760 (10%), Positives = 170/760 (22%), Gaps = 47/760 (6%)

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            P     +S + + P  A ++   +         ++    +                 A+L
Sbjct: 485  PVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLSGPRWRVGPRDLALLGRRARL 544

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            L        D      ++  + G     S+     D  D      L+    +    FS  
Sbjct: 545  LVSHARVEGDDDPDRRLAEAVEGV--DPSEVISLADALDTFLETPLDGTGDDDGLPFSAD 602

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            A +       E   +  AL   L +   +   +T            L         +   
Sbjct: 603  ARVRFARLATELRELRRALSDPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLD 662

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN-ALELVALRG 478
              ++        +LL  +  L         + + L       K L+  K+  LE   +  
Sbjct: 663  VAASFAAGDGEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAV 722

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                              A  K   H     +    +        +    + +      +
Sbjct: 723  PGLVTGTFPSGQGREKWTAQGKVLPHGLRGDAETLPDVASWDARGLKAFHEAMKDHQHTE 782

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL-----WFEEEGKTLSSLFSKIIE 593
              +               +                 L             +     +  E
Sbjct: 783  ELRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSDFLTALYEHCAAGHGEIEVWADEPAE 842

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI-LGTLESRLLNFDTLILGGLNEG 652
                   +     ++    +D   +  +   + T+   L  L +R     +      +  
Sbjct: 843  DEENPALHRATADEVWPLPLDDAALARRRSAAETVLAHLDGLAAREDGPPSAPATYEDPD 902

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
              P                                      T             +P  A
Sbjct: 903  WPPPPEDDEGLPEEAEPDRAGDPAHWDSWTTERPAAAREAATAPESPAAPQAGPTVPHQA 962

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
                Q               +  +    W R LD  T +    R            + + 
Sbjct: 963  PPPEQPPGTAPVPAPARLTPEEARTVASWDRDLDALTGELLRARESVTEVPLPA--SLTA 1020

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            S++  L  DP    A+ + +    P          RGT FH  +    +           
Sbjct: 1021 SQLLSLAADPDGF-AQELARPMPRPPQ----PAARRGTRFHAWVEARFEPLTLPLLEPEE 1075

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                       + E    H           +  +F   E   ++      V  P ++++ 
Sbjct: 1076 LP-------GGDAEIADDH-------DLEFLKDAFERTEYARRTPFR---VEAPFQLSLA 1118

Query: 893  SIGIHLTGFADRIDLLKSG---FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
                 + G  D +     G     +I D+KT      +        QL+L   A      
Sbjct: 1119 GR--VVRGRIDAVYKEGDGDTATYEIVDWKTNRAATADP------LQLALYRIAWAEQ-- 1168

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
              +    V    ++ ++    +       +      L  +
Sbjct: 1169 QHVPPASVT-AAFLYVRTGEVVRPEGLPDRAALEKLLLAE 1207


>gi|52079565|ref|YP_078356.1| ATP-dependent deoxyribonuclease subunit A [Bacillus licheniformis
            ATCC 14580]
 gi|52784929|ref|YP_090758.1| AddA [Bacillus licheniformis ATCC 14580]
 gi|81609244|sp|Q65LJ9|ADDA_BACLD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|52002776|gb|AAU22718.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus licheniformis
            ATCC 14580]
 gi|52347431|gb|AAU40065.1| AddA [Bacillus licheniformis ATCC 14580]
          Length = 1230

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 89/841 (10%), Positives = 218/841 (25%), Gaps = 128/841 (15%)

Query: 213  ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
              + +EA    +     +++     +      ++  VA   +   +    D       + 
Sbjct: 387  EAVPSEAAKFYRHQFHEVLVDEYQDTNLVQEAILKLVAKEEHEGNLFMVGDVKQSIYRFR 446

Query: 273  TITEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDIKREDVKRLGNVS------NE 319
                          T                    D LD      K+L          +E
Sbjct: 447  LAEPLLFLSKYKRFTDDGSGSGQKIDLNKNFRSRSDILDSTNFLFKQLMGEKVGEVEYDE 506

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                 +  S        +++   +          +    V L        EA ++A  +R
Sbjct: 507  QAELKLGASYPPNEATKTELLLIETPSGAPGEEAEELEAVQL--------EARAMAGQIR 558

Query: 380  MSLDE---------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
              + E                 +   ++      A ++  E  + GI +  +        
Sbjct: 559  RLITEKFQVYDAKAKASRNIQYRDIVVLLRSMPWAPQIMDEFKQQGIPVYANLSTGYFEA 618

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
               S+  SLL  I      + +A++++ P+      E  L R K+               
Sbjct: 619  TEVSVTLSLLKIIDNAYQDIPLASVLRSPVVGLDENELSLIRIKDKKAPFYEAMKAYLAA 678

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                + L       ++ +  +  W++          +  +    + +  +      K   
Sbjct: 679  ADGDERLSEKL---RRFDGLLKKWRAYAKNHSVAELIWEIYRDTKYLDYVGGMPGGKQRQ 735

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                ++ D  +              R +  +    +    +   S+  +    +  ++ +
Sbjct: 736  ANLRALYDRARSYEATSFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSK 795

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF----------------------- 641
             ++       G      +   +  ++L         F                       
Sbjct: 796  GLEFPVVFTAGLGRNFNMMDLNKSYLLDKELGFGTKFIHPKWRISYPTLPLIAMKKKLRR 855

Query: 642  ---------DTLILGGLNEGVWPKNTAKNP--FLSRVMQSDLN----LKTAEKYIGQAAH 686
                       + L    E ++   TAK+    L+            L   E++  ++  
Sbjct: 856  ELLSEELRVLYVALTRAKEKLYLVGTAKDKEKLLADWRTQAAGSEWLLPDYERFQAKSYL 915

Query: 687  DFE--MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
            DF        R +  + +    +         Q   +       + + + G+   D   +
Sbjct: 916  DFIGPALMRHRDMDESGAPPVIDEIREHPARFQVSWLSAADLQAEAVDQAGEERHDRLVQ 975

Query: 745  LDYTTKQPHYKRPK-----------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
            +            +           P+          S SE+K+          R +++ 
Sbjct: 976  IQMGHAIEGAFEYEQQVRERLAWSYPYKDAAKVRTKQSVSEMKRQKEYEDEYGDRSLIRP 1035

Query: 794  --------DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                           K     +RGT  H ++  +          E++ L+ ++++     
Sbjct: 1036 SQEALLFKRPSFMMAKGLTAAERGTAMHTVMQHIPLT-RTPEKNELSRLLDRLVEKELLT 1094

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI-EKIFVNIPAKMAI-----------ES 893
            E+    I+            +F + E   +     ++   +P  M +             
Sbjct: 1095 EDQRAAIE-------EDDILAFFDTEIGQKLFGARRVEREVPFNMTLSAKEVYPDLESAD 1147

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAAL 944
              + + G  D +   + G   + DYKT    G         +       + Q+ L A A+
Sbjct: 1148 EPVLIQGIIDCLFETEDG-FYLLDYKTDRIHGKYRNGFEGAEPILRKRYETQIQLYARAV 1206

Query: 945  K 945
            +
Sbjct: 1207 E 1207


>gi|259909492|ref|YP_002649848.1| exonuclease V subunit gamma [Erwinia pyrifoliae Ep1/96]
 gi|224965114|emb|CAX56646.1| Exodeoxyribonuclease V gamma chain [Erwinia pyrifoliae Ep1/96]
 gi|283479566|emb|CAY75482.1| recC [Erwinia pyrifoliae DSM 12163]
          Length = 1122

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 96/954 (10%), Positives = 234/954 (24%), Gaps = 122/954 (12%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
             L S  + V +    Q L+    E     +          ++      + +   +    
Sbjct: 28  DPLRSEVVLVQSPGMAQWLQMSLAEEFKIAA----------NIDFPLPASFIWDMFVRVL 77

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYP---ESPLSLPISPANAIWLAKNLADIIDI 158
           P    +     + +       LP ++           LS          LA  +AD+ D 
Sbjct: 78  PEIPKESAFNKSSMSWKLMAILPGMLPGEAFTMLRHYLSDDDDKRKLFQLASRVADLFDQ 137

Query: 159 IETEEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217
                 +W +        +      +    L  A   +T RL +             +  
Sbjct: 138 YLVYRPQWLNGWEKGQLTEGLGDAQIWQAPLWAALVEYTRRLGQPEW-HRANLYRRFISR 196

Query: 218 EAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                 +       + I G +   P   + +  +  H    ++      H    I +   
Sbjct: 197 LENSSTRPPNLPDRVFICGISALPPVYLQALQALGKHIEIYLLFTNPCRHYWADIQDYAF 256

Query: 276 EKSTNITSSNTTYSTHP--------------------QYSLAKLLDFLDIKREDVKRLGN 315
                           P                    Q S   L  +  + R+++  L +
Sbjct: 257 LAKLQSRHRRHYQDNRPIPQFRDADNASSLFNDAGEQQLSNPLLAFWGKLGRDNLYLLAD 316

Query: 316 VSNE-------------MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
           +  +             +      + +         + +          +      V + 
Sbjct: 317 MEPDEVFAFVDIEPINLLQTLKRDLLELEDHAVIGLLESEWENSRSKRVLNADDRSVEIH 376

Query: 363 EADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFGINI 413
              + + E   +   L   + ++     +   ++ AD +        +         +  
Sbjct: 377 LCHSPQREVEVLQDRLLAMMADDPKLTARDIIVMVADIDAYTPFIQAVFGNAPADRAVPF 436

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNAL 471
            IS               SLL+          +  L++ P    +F   E+ LS  ++ +
Sbjct: 437 AISDRRASQAHPALQAFISLLSLPDSRFTAEEVLALLEVPAVASRFAIDEEGLSLLRHWV 496

Query: 472 ELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
               +R   +   + +L        +                           + +  L+
Sbjct: 497 AESGVRWGLDDDSVRELDLPATGQHTWHFGLTRMLLGYAMNSEAGDWQGILPFDESSGLI 556

Query: 525 DHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
             +   +  L+      +        +  W  L    L +    +      L   E  + 
Sbjct: 557 AELAGNLAELLMQLNRWQQWLSEPRELDSWLPLCRRMLDDFFNSDAETDAALALIE--EQ 614

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                +  ++ G           D ++  +D + +  +      +     +  R + F  
Sbjct: 615 WQQAINYGVQAGYRQAVPLTLLRDELSSRLDQQRISQRFLAGP-VNFCTLMPMRSIPFKV 673

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRS 702
           + L G+N+GV+P+      F   +M   L      +         E  N   + L  +  
Sbjct: 674 VCLLGMNDGVYPRTLPPLGF--DLMSQQLQKGDRSRRDDDRYLFLEALNSAQQQLYISYI 731

Query: 703 LRE--NNIPTIASRWLQRLLVL------------------------GGTDFFDNLKKRGQ 736
            R   +N     S  +  L+                                  +    +
Sbjct: 732 ARSIQDNTERYPSVLVSELVEYISQSFCLAEDSARDVDSSAEAVVKHLHHLHSRMPFAAE 791

Query: 737 CYLDWTRKLDYTTKQPHYK--RPKPFPPLEAQPRTYSFS-----EIKQLINDPYAVYARR 789
            +        +  +       +    PP        S +     ++ +    P   +   
Sbjct: 792 NFSPQAEFRSFAAEWLPAASGQGTAHPPFMRALPEESETVIGFDKLVRFWRHPVRAFFSL 851

Query: 790 ILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            L + F       PD       G   + + + L+   I+ N  +                
Sbjct: 852 RLGVSFQLEETGLPDAEPFSLDGLSRYQVNSLLLNSLIDGNEGDKL-----YTRQRAAGV 906

Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
                   ++                + +++ E        ++++   G+ L+G
Sbjct: 907 LPYGAFGELFWQEQEAEMSELAAQVREQRAAAE------NWEISLTLGGVTLSG 954


>gi|170738831|ref|YP_001767486.1| double-strand break repair helicase AddA [Methylobacterium sp. 4-46]
 gi|168193105|gb|ACA15052.1| double-strand break repair helicase AddA [Methylobacterium sp. 4-46]
          Length = 1157

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 87/843 (10%), Positives = 179/843 (21%), Gaps = 64/843 (7%)

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAA 185
            + +      L   +  A A      L  +   I    E +   L AL  +          
Sbjct: 319  LDEQARLGRLRERLKAARAQERTAALFTLAAEIHRRVEAQKARLGALDFDDLIH---KTL 375

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            D L      W    ++      V    A      +  +         AG         R 
Sbjct: 376  DLLTRVDSAWVLYKLDRG-VDHVLIDEAQDTNPEQWEILRRITEDFCAGEGARRGPLPRT 434

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
               V +         G                +     +         +  AK +     
Sbjct: 435  RFAVGDPKQSIYSFQGAAPEEFETTRQAWRRAARGAGLAFEDVGLTLSFRSAKGVLRGVD 494

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFL-PPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                +       +   G    + ++                  + P        V  +EA
Sbjct: 495  ATFALAEHYRGLSFGDGAIGTVHETVRVGAPGQVELWPTEEPCEEPEPDAWVQPVDAVEA 554

Query: 365  DNEREEAISIAIALRMSLDENKKK----------SALITADRNLARRVKLELTRFGINID 414
                                   +            L+         V   L    + + 
Sbjct: 555  GAPALVVARRVARAVRHWTREGDEHGRIWRPGEILILVRKRSAAFEGVIRALKAEDVPVA 614

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
                + ++  +    L +   A    +D + +A  +K PL      +     A+ A E  
Sbjct: 615  GQDRLDIAAHIAVMDLVAAGRAALLPDDDLTLACALKTPLVGLTDDDLVRLAARRAPEES 674

Query: 475  ALRGNKNSYDIMDLKSLVLDR----IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                        D  +L               +    + + L       A L+     + 
Sbjct: 675  LAAALARHAGAGDPAALRGAAALATWRRLAQESGPFGFYADLLGPLGGRARLVARLGGEA 734

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
               +  + T              T        +   D             G T+      
Sbjct: 735  GDAIDVFLTAAAQAEQGADAPSLTGFLSRYAPSGGRDAG-----------GHTVKRDLES 783

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
              +    +  +  + ++    ++              L +               +    
Sbjct: 784  ARDEVRVMTVHGAKGLEAGLLVLIDGCEPLGRNDPPLLPV--------PVRGAGGVADGT 835

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
              VW  +   +       +  L+ +  +++       +      +  +     R  +  T
Sbjct: 836  VPVWSPSKGHDCPAGAAAREALHERARQEHN---RLLYVAMTRAKDRLVIAPYRGRDRET 892

Query: 711  IASRWLQRLL----VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
              S             GG +  +      + +                  P   P    +
Sbjct: 893  PESWCEMVRRGLVAAFGGVERAEMPYGPAETWRHGAALPAAPATAVPPAPPGERPDWLFR 952

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
            P       +  L                       DP    RG L H ++  L      +
Sbjct: 953  PVAPEAEPLPPLRPSGLGAADE----PRRSQPRSGDPAARRRGVLIHALLEHLPALAPER 1008

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                                   P +    R          L   +            + 
Sbjct: 1009 RAAAARA----------FVAARAPGLPAAEREALATSVLRLLADPDLSVLFGPLARAEVA 1058

Query: 887  AKMAIESIGIH--LTGFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDPQLSLEAAA 943
                +   G+   + G  DR+ + +   V + D+KTG  P         +  Q++L AA 
Sbjct: 1059 LAGTVSLGGVEWPVHGRIDRLAVTEE-AVWLCDFKTGRPPAEGAPVPGGMAAQVALYAAL 1117

Query: 944  LKA 946
            L  
Sbjct: 1118 LAR 1120


>gi|170719946|ref|YP_001747634.1| exodeoxyribonuclease V subunit gamma [Pseudomonas putida W619]
 gi|169757949|gb|ACA71265.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas putida W619]
          Length = 1158

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 104/984 (10%), Positives = 236/984 (23%), Gaps = 106/984 (10%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79
           L   +V   R  PL P  L +    V +    Q L+          +  G        ++
Sbjct: 22  LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPLADDQGGCGIAAAIEVQ 79

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             G  + + +    +L  +  P VS + +     RL+ +    +     +      L+  
Sbjct: 80  LPGSFMWQLYRK--VLGRDEIPEVSLLDKAPLTWRLMRLLPALIERPHFEPLRRF-LTDD 136

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-----GMWWLLAADFLKIASKY 194
                   LA+ LAD+ D  +     W  L      ++            A   +  ++ 
Sbjct: 137 GDLRKRYQLAERLADLFDQYQVYRADW--LKDWAAGQHVLNTARGERKPLAPGNRWQAEL 194

Query: 195 WTERLVELNASSPVGYQIALMRAEA------EHLMKGTKGPIIIAGSTGSIPATARLMST 248
           W   L ++        +  + +         E    G    +I+ G +         ++ 
Sbjct: 195 WRALLEDVGEQGMAQSRAGVHQRFTECINNLEQPPAGLPSRVIVFGISSLPAQALEALAG 254

Query: 249 VANHPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
           +A      + +     H  + I             ++            +  Q++   L 
Sbjct: 255 LARFSQVLLCVHNPCRHHWSDIVADKDLLRHQYKRQQRKQGMPVQLDDESLHQHAHPLLA 314

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD---------------MRNTDIL 345
            +    R+ +  L +  +    +             ++                  T+  
Sbjct: 315 AWGKQGRDYINLLDSYDDPGSYQGAFSDGRIDLFSETEPATLLNQLQDDILELRPLTETR 374

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARR 401
           E            V    A + + E   +   L            +   ++    +    
Sbjct: 375 ELWPEVDLAKDRSVRFHIAHSPQREVEILHDQLLARFSADPTLRPRDVIVMLPAIDNYAP 434

Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP- 453
               +           I   ++             L  LL           +  L+  P 
Sbjct: 435 HIRAVFGQLQRNDPRYIPFTLTDQGQRGRDPLLIALEHLLKLPDSRFAVSEVLDLLDVPA 494

Query: 454 ---LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
                     +            +    N      + L   +            +  +  
Sbjct: 495 VRGRFGIRESDLPTLHRWIEGAGIRWGLNAEQRATLGLPEGLEQNSWRFGLRRMLLGYAV 554

Query: 511 RLSE-----EDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
            + E     E  +    L    I   +  L       +      + + W +     LQ  
Sbjct: 555 GMGEGCDGIEPYDEIGGLDAALIGPLVALLDALDVANHVLSQPATAAQWGERLNALLQVF 614

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
            L E      L  +   + L   + ++ ET        +  I         +    +   
Sbjct: 615 FLAEGEHDEFLLMQ--LQELRDSWLEVCETVGLQDLLPLTVIREAWLSGLDQGKLSQRFL 672

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           + ++     +  R + F  + L G+N+G +P+      F           ++  +     
Sbjct: 673 AGSVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQQPLDFDLMASDYRPGDRSRREDDRYL 732

Query: 685 AHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLL-VLGGTDFFDNLKKRGQCYLDW 741
                + +    L  +   R   +N    AS  + +L   L             Q     
Sbjct: 733 -LLEALLSARDQLYISWVGRSIRDNSERPASVLIGQLRDHLAAGWRLAGSGDSQQAGEQL 791

Query: 742 TRKLDYTTKQPH----------------------------YKRPKPFPPLEAQPRTYSFS 773
              L                                     K+     P  +     +  
Sbjct: 792 LHALTQEHPLQPFSPRYFQKGSALFSYAHEWQLLHQVGDEAKQSDVGLPPYSSNEALTLM 851

Query: 774 EIKQLINDPYAVYARRILKL--DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
           +++  +  P   +  + LK+  + +     D +      L     +E +           
Sbjct: 852 QLQDFLRHPVRHFFSQRLKVFFEALESPTPDEEPFVLDALQRYSASESLLGAALAEPENA 911

Query: 832 NHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
              ++           LP      + +    +     L+             V     + 
Sbjct: 912 EQALQAQARRLQACGMLPLAGFGELLQAELIQPLPDLLQRHR-HLLQRWPALVEGALPIH 970

Query: 891 IESIGIHLTGFADRIDLLKSGFVD 914
            E  G  L G+  R+       + 
Sbjct: 971 FEHGGHRLEGWLGRVYQADDQSLL 994


>gi|146278983|ref|YP_001169142.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
            17025]
 gi|145557224|gb|ABP71837.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
            17025]
          Length = 1119

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 95/906 (10%), Positives = 207/906 (22%), Gaps = 114/906 (12%)

Query: 81   LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
            L   +E     D   +  L     +      LA L  +                      
Sbjct: 251  LTAALEAGSANDQKAAAKLRLLSFSAPTTATLAGLEGVLLTGASAKEPYTAKIGSFPTKA 310

Query: 141  SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
            +      LA  L  ++  +E        L A +  +          F  +    +  R  
Sbjct: 311  TRGALGPLADRLEALMRRVEAARPVRCCLLAAERARLIH------AFAGVFLPLYEARKA 364

Query: 201  ELNASSPVGYQIAL--------MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN- 251
                                  +       + G    I++  +  + P   +++  +A  
Sbjct: 365  ARGWLDFDDLIQRAKGLLTDPSVAQWVLFRLDGGIDHILVDEAQDTSPDQWKVIELLAQE 424

Query: 252  -------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
                         +    D       +      + +   +             + LD L 
Sbjct: 425  FTAGRGAREVERTIFVVGDKKQSIYSFQGADVAAFDRMRAEFGERLAGAERRLEELDLLH 484

Query: 305  IKREDVKRLGNVSNEMYGRSM-------VISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
              R     L  V      R                           +     P  +  F 
Sbjct: 485  SFRSSPTILRLVDLTFDERRRQDLGGEVRHIAFRSDMPGRAELWPLVEAATEPEPENWFD 544

Query: 358  DVALIE-ADNEREEAISIAIALRMSLDE--------------NKKKSALITADRNLARRV 402
             V L+    +    A  +A  +R  ++E                    L+    ++   +
Sbjct: 545  PVDLVSDEHHAARLARQVAARIRAMIEEGVQIPQPGGFRPVAAGDFLILVQRRSDIFGEI 604

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                    + I  +  + L   L    L++LL  +    D +++A +++ PL  +   E 
Sbjct: 605  IRACKEARLPIAGADRLKLGAELAVRDLSALLAFLATPEDDLSLAAVLRSPLFGWSEAEL 664

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
            +        E    R  +           +L  +  Q +         R          L
Sbjct: 665  FDLAHGR--EGYLWRRLREREATHPETVAILRDLRDQADFLRPFDLIERALTRHDGRRRL 722

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            L     +    +    +   +                                W + +  
Sbjct: 723  LARLGEEAEDGIDELLSQALAYERT------------------DVPSLTGFLTWLQTDEV 764

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             +             +  +  + ++                 +  + +  T + +    D
Sbjct: 765  EVKRQMEAAGGRIRVMTVHGSKGLE-----------------APIVILPDTADRKPREHD 807

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
             +        VW     ++P      +     + A + +        +A          +
Sbjct: 808  EIFTLDCGARVWKTPAPESPPQIAAAREARRARDAAENLRL----LYVAMTRAQCWLIAA 863

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
                     A   L R  +          +  G   L          +    +  +P  P
Sbjct: 864  AAGKLESGGAWHDLIRQGMEAAGA---ERRADGTLLLVEGDWPAPAPRPAAPEAGRPALP 920

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
              A+    +      L+       A+ +                 RG+  H ++  L   
Sbjct: 921  GWARIHAAAPVAAPGLLLPSDLGGAKALPGEALPTEL-----ALARGSAVHRLLEHLPLH 975

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
                       L+  + D                     +   + L  E+   + +    
Sbjct: 976  PPETWDEVARGLLPDLGD----------------LGDVLEEVRAVLSAEDLGAALVPHAL 1019

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLE 940
            + +     +      L G  DR+ +     V   DYKT      + E   + I  Q+   
Sbjct: 1020 IEVQVTAEVAGR--RLFGTIDRLVVDPD-RVLAVDYKTNMVVPARPEEVPEGILRQMGAY 1076

Query: 941  AAALKA 946
            A AL  
Sbjct: 1077 AEALAR 1082


>gi|119964140|ref|YP_948452.1| UvrD/REP helicase [Arthrobacter aurescens TC1]
 gi|119950999|gb|ABM09910.1| UvrD/REP helicase [Arthrobacter aurescens TC1]
          Length = 1167

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 89/890 (10%), Positives = 207/890 (23%), Gaps = 102/890 (11%)

Query: 5   KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            P +      S     M   ++        R +         V     T++A  EL S  
Sbjct: 52  SPRLVIAGAGSGKTATMADRVVWLVANGWVRPE--------EVLGVTFTRKAAGELASRI 103

Query: 65  IEITGK--------------------KSTILPIIKSLGDVVEE-KFTADLLLSYNLNPPV 103
                                        + P + +             L L    +  +
Sbjct: 104 RSKLATLQRIAAADDGSIGFPEGLLEADDLEPKVSTYHSYASGIVSDYGLRLGIERDVVL 163

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPE---SPLSLPISPANAIWLAKNLADI-IDII 159
               +  +LA  ++   +               + + L    A  +     + D  ++ +
Sbjct: 164 LGGAQSWQLASEVVEAYDGEYQHFTAAKSTLVTAVIQLAGECAEHLQDPGEVRDWVLERV 223

Query: 160 ET-EEKKWEDLHALKNEKYGMWWLLAADFLKIASK---YWTERLVELNASSPVGYQIALM 215
           +T EE  +         +               +     + E   +              
Sbjct: 224 QTFEELPYVAGAKKNPTQAAGELAAMLRTRGSVADMVVRYQEAKRQRGVLDFGDLVALAA 283

Query: 216 RA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
           R       A    +     +++     +  A   L S +     G  V    D +     
Sbjct: 284 RIASDIPLAATTERARYKVVLLDEFQDTSHAQLVLFSRLFG--QGHAVTAVGDPNQSIYG 341

Query: 271 WNTITEKSTNITSSNTTYS-----THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
           +   +                      +        +L     + + +   +N +     
Sbjct: 342 FRGASAGQLFHFVQEFPVRHADHSGDNESYSVAPTSYLTTAWRNGRNILQAANTIAAPLN 401

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
             + S  P           +   +P+       V +     + +EA +IA  +R      
Sbjct: 402 RAAASEGPAGDRKTAGNVSVPALVPSPAAVDGSVVIGRFGTDEDEATAIARDVRRYQRTV 461

Query: 386 KK----------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
            +            A++   R     ++ E    GI  +I     L  T     L + L 
Sbjct: 462 FEEEKDGTPVKPTMAVLCRRRAQMECLRREFELQGIPYEIVGLGGLLDTPEIVDLVATLR 521

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL-- 493
            +       A+  L+     + G  +       +          +   +  D        
Sbjct: 522 VLADPGRSDALMRLLAGARWRIGPADLMAFSDWSRFLARRRSAPEAHPESFDDNEEPAGV 581

Query: 494 ------DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                    A+              S   + L+   +D +    + L + ++        
Sbjct: 582 VVESDITDAASLVEALDFLPRPGWTSGHGRSLSAAALDRLTSLASELRSLRSYIGDDLTT 641

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
           L + +  +  +  ++                +  +  ++ F +  +    +    + W++
Sbjct: 642 L-LGEVERAMLLDIEVAAKPGISIHQARRNLDAFQDAAAGFLQTSQRIDLLAF--LSWLE 698

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP----- 662
                  G  V P       + +L    S+ L +D + + GLN G +P N          
Sbjct: 699 AAASEEGGLDVAPVETNREAVQLLTVHASKGLEWDVVFVPGLNAGSFPSNRDSRWSTGAA 758

Query: 663 FLSRVMQSDLNLKTAEK------------------------YIGQAAHDFEMANGTRHLI 698
            L   ++ D                                   +    +      + ++
Sbjct: 759 ALPWPLRGDRADLPQWDLDQPDQKGWLDAEKDFKSEVQHHGEAEERRLAYVAYTRAKFVL 818

Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
           +  S   N   +  +     L  L        ++            + +         P+
Sbjct: 819 WASSAAWNGSRSGMAGMSAFLSELAPLAAVAAVEDGAARMQSLASAVIHAESVAEEALPE 878

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
             P   A             +  P        L+L        D      
Sbjct: 879 ESPLTAALEVAQFP---YDPLEGPSDPRTGARLRLTPGRRSAMDRAAALV 925



 Score = 78.8 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 79/621 (12%), Positives = 158/621 (25%), Gaps = 50/621 (8%)

Query: 390  ALITADRNLARRVKLELTRFGINIDISA-GIPLST------TLHSSILTSLLNAIFKLND 442
             ++ +D   A  +   L         S  G  LS       T  +S L SL + I     
Sbjct: 581  VVVESDITDAASLVEALDFLPRPGWTSGHGRSLSAAALDRLTSLASELRSLRSYIGDDLT 640

Query: 443  F----MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                 +  A L+   +A       + +R        A  G   +   +DL + +    A 
Sbjct: 641  TLLGEVERAMLLDIEVAAKPGISIHQARRNLDAFQDAAAGFLQTSQRIDLLAFLSWLEAA 700

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDH-ILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                  +       + E  +L  +     +   +  +         +  +   S      
Sbjct: 701  ASEEGGLDVAPVETNREAVQLLTVHASKGLEWDVVFVPGLNAGSFPSNRDSRWSTGAAAL 760

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-LIDGE 616
               L+    D  +   +   ++        F   ++     +   + ++       +   
Sbjct: 761  PWPLRGDRADLPQWDLDQPDQKGWLDAEKDFKSEVQHHGEAEERRLAYVAYTRAKFVLWA 820

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +        S +  +    S L     +              +       V +  L  ++
Sbjct: 821  SSAAWNGSRSGMAGMSAFLSELAPLAAVAAVEDGAARMQSLASAVIHAESVAEEALPEES 880

Query: 677  AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                  + A              T +             + R   L      +       
Sbjct: 881  PLTAALEVAQFPYDPLEGPSDPRTGARLRLTPGRR--SAMDRAAALVRGYIEEPGHAPSN 938

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT-YSFSEIKQLINDPYAVYARRILKLDF 795
                   K     +    ++ +     +    +  S S    L  DP    A  + +L  
Sbjct: 939  DLTGVAGKWSQEAELLLDRQRQAKTVQDVHLPSHISASLFVDLGADP----AAVLSQLRR 994

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                +        GT FH  + E        +  E                       I 
Sbjct: 995  PVPREPGISARK-GTAFHAWVEEYFGTTGMLDLDEA----------------PGSDSHID 1037

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
              +       +F + E   ++     FV +P +  I    + + G  D +     G   +
Sbjct: 1038 EAYGLDDTVAAFKKSEWAQRA---PAFVEVPVETRI--GDVVVRGRIDAVFRDADGRWQL 1092

Query: 916  TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
             D+KTG  P  +    +   QL++   A        +    V+  FY         D + 
Sbjct: 1093 IDWKTGRRPAGQQL-AIRAVQLAVYRLAWAR--LKDVPLEDVSAAFYY-----VADDAVV 1144

Query: 976  NDKKKYSADELSEKSLKNLIE 996
                  SA+EL     K L  
Sbjct: 1145 RPHDLGSAEELELIVAKALKS 1165


>gi|229149252|ref|ZP_04277491.1| UvrD/REP helicase [Bacillus cereus m1550]
 gi|228634224|gb|EEK90814.1| UvrD/REP helicase [Bacillus cereus m1550]
          Length = 957

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 112/1041 (10%), Positives = 274/1041 (26%), Gaps = 144/1041 (13%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P S     ++       ++    +  + P    ++ +   T++A  EL +        ++
Sbjct: 28   PGSGKTYTLVE-----RILYLIEHKQVEPE---NILVATFTEKAANELVTRISNKL-HEA 78

Query: 73   TI---LPIIK--SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
             I   L  +   ++  +         L     N   + +++   L             + 
Sbjct: 79   NIKFNLNEMYVGTIHSLC--------LRILEENREYTRLKKNYILMDQFDQQYMLYQKLS 130

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
            + L  +   S+     +    ++ L   I+ +  E      ++ L +             
Sbjct: 131  RFLELDEIESVLNFNTSRWKQSQELLKWINKLSEEIVD---INKLIDSDEAR-----LRV 182

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPAT 242
            L    K + + L+E NA      Q+        H             ++I     +    
Sbjct: 183  LGKCYKVYEQLLIEENALDFSTIQLETYNLLQNHEDVRNNLNAKLHYLMIDEFQDTNTIQ 242

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             +L+  +A       V+   D       +   T ++      N       Q  L+     
Sbjct: 243  EKLVFLLAGKQQNICVV--GDDDQGLYRFRGATIRNILEFPQNFPKGICQQVELSTNYRS 300

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                 +   +   +    + ++    +        +    +       + +    D    
Sbjct: 301  NPAIVQFYNQW--MEQNNWSQNGTTYRFDKKITAHESNKVNQKTVVKVSGEDGLDDW--- 355

Query: 363  EADNEREEA-ISIAIALRMSLDENKKKSALITADRNLARRV--KLELTRFGINIDISAGI 419
                   E  + +    +     +  + A +      +R +     L   GI +      
Sbjct: 356  -----ESEVYLFLQAMKKEGGISDWNQVAFLFRSVKNSRVLNLSRYLEERGILVYSPRSN 410

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
                     +  +L   +F    +  +                                 
Sbjct: 411  LFFERREIRL--ALGAILFLFPMYAQLRKWNDSAFLPEWEFYDACLL--------EFAEE 460

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                +  DL     ++  T         +             L  D        L     
Sbjct: 461  LRKPENHDLLRWCKEKARTHMTLNKNLDYAFSGLFYQFIQFELFSDL-------LSDNVF 513

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE-EGKTLSSLFSKIIETGSCI 598
                +    ++S ++KL           E+    +++ +   G ++   F++ I      
Sbjct: 514  TVKDSREVRNLSQFSKLLTKF-------EYLHHISVFTQRNIGDSVVRFFNQYIRF---- 562

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                     ++   ID      +   S  +  L   +S+ L F  +I+G L      + T
Sbjct: 563  ---------LLQGGIDEYEDDSEYAPSGCVSFLTIHQSKGLEFPVVIVGSLESTPRKQYT 613

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQ--AAHDFEMANGTRHLIYT----RSLRENNIPTIA 712
              +  L          +  E+          +   +  ++L+                I 
Sbjct: 614  DIDELLQTDFYQKPPFEPIERTKIYDFYRLYYTAYSRAQNLLVLSCQENVANGAGTRNIP 673

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
            S++                      Y D     D  T     +  +       +  +++ 
Sbjct: 674  SKYFTE------------------SYRDLKSWRDEPTIYN-IELAQVKDVNIKREYSFT- 713

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-KRINKNTPEI 831
            S I             + L    +         T  GTL H  I ++ K    N+     
Sbjct: 714  SHINLFETCSLQYKFYKELGFAPVRQ-----GATIFGTLVHQTIEDIHKSALKNEAYLIT 768

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
               ++   ++++   +    +  +              + EK       I       +++
Sbjct: 769  EANIEDWFNTNYRHLSKRERVY-LAPQTQEAALKQVKSYVEKQYGDWSHIQ-EAEVDVSL 826

Query: 892  ESIGIHLTGFADRIDLLKSG-FVDITDYKTGDNPK-KETAQKLID--PQLSLEAAALKAG 947
                  L G  D +     G  V+I D+K+   P   +    L     QL + A  ++  
Sbjct: 827  VKDKYILKGTIDLV--KGDGDTVEIVDFKSEKKPDLVKEQDALYRYKRQLEVYAHLVEER 884

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
            +  ++       L+Y     +   +     +K  S   +  +++K+   IV  +++ +  
Sbjct: 885  TNYKVSKMH---LYY---TGEKDSNPYVTFEKDTS---VINQTIKSFDRIVDRIESHD-- 933

Query: 1008 FISHLRLSE-----KSNIQSE 1023
            +    R  +           +
Sbjct: 934  YTIKQRPKKHCGNCDMRFYCD 954


>gi|330009179|ref|ZP_08306463.1| exodeoxyribonuclease V, gamma subunit [Klebsiella sp. MS 92-3]
 gi|328534898|gb|EGF61435.1| exodeoxyribonuclease V, gamma subunit [Klebsiella sp. MS 92-3]
          Length = 1125

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 102/974 (10%), Positives = 242/974 (24%), Gaps = 123/974 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP          + V +    Q L+       G  + I     
Sbjct: 11  DVLEALMEFIVERQRLDDPFQAE-----MVLVQSTGMAQWLQMTLAARFGIAANIE---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         S      +L  L+     +       +     LS  
Sbjct: 63  PLPASFIWDMFVRVLKDIPGESAFSKQSMSWKLMTLLPQHLEED----DFILLRQYLSDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   LA  +AD+ D       +W          +           L  A   +T  
Sbjct: 119 GDKRKLFQLAARVADLYDQYLVYRPEWLMRWEAGQRVEGLGDAQQWQAPLWQALVSYTAE 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             +    +           + I G +   P   + +  +  H +  
Sbjct: 179 LGQPQW-HRANLYQRFISTLEKADEPPAGLPSRVFICGISALPPVYLQALQALGKHVDVY 237

Query: 257 IVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYSLA 297
           ++      +    I                      +        +         Q    
Sbjct: 238 VLFTNPCRYYWGDIKDPAFLAKLLSRQRRHHREARALPLFRDTEQAPGLFNDAGEQDVGN 297

Query: 298 KLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLAGLERYEELDAFVDIAPDNLLHNLQSDILELRNAAVAGQSAEA 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                    +      +++    + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 FAHSRDKRPLTLDDRSLSIHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +             IS      +        +LL+          +  L+  P
Sbjct: 418 YSPYIQAVFGAASGDRWLPWAISDRRARESHPVLQAFITLLSLPDSRFASEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L        +              
Sbjct: 478 VLAARFNITEEGLRYLRQWVNESGVRWGMDDDNVRELDLPATGQHTWRFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L+  ++  +   L+     +        +++W  +    L +
Sbjct: 538 DSREGEWQSVLPYDESSGLIAELVGNLASLLMQLNLWRRGLAQQRPLAEWLPVCRDLLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +      L   E  +   ++    +E     +         + + +D + +  +  
Sbjct: 598 FFLPDSETEAALALIE--QQWLAVIDSGLEAQYGEQVPLTLLRYELAQRLDQQRISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+      F   +M          +    
Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMSQKPQRGDRSRRDDD 712

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLKK 733
                E        L  +   R   +N     S  +Q L         L G +  D    
Sbjct: 713 RYLFLEALMSAEQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHCLAGDEELDCDAS 772

Query: 734 RGQCYLDWT-----------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
             +     T                         L    +Q         P       + 
Sbjct: 773 EARVKAHITHLHTRMPFDVANFQEDENKSYAREWLAAAGQQGEAHSDFIQPLTAPPIDSL 832

Query: 771 SFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
            F ++ +    P   + ++ L+++          D   T  G   + +  +L+   I + 
Sbjct: 833 PFDQLLRFWQHPVRAFFQQRLRVNFRAEEDDIPDDEPFTLEGLSRYQLNQQLLNTLIEE- 891

Query: 828 TPEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
             +++ + ++               +    R     ++   +   ++             
Sbjct: 892 -QDVSAMFRRFRAAGELPYGAFGELVWETQRLEMQALAERVMAERQQA----------QS 940

Query: 887 AKMAIESIGIHLTG 900
            ++ ++  G++LTG
Sbjct: 941 MEIDLQCGGVNLTG 954


>gi|310766600|gb|ADP11550.1| exonuclease V subunit gamma [Erwinia sp. Ejp617]
          Length = 1122

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 96/954 (10%), Positives = 234/954 (24%), Gaps = 122/954 (12%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
             L S  + V +    Q L+    E     +          ++      + +   +    
Sbjct: 28  DPLRSEVVLVQSPGMAQWLQMSLAEEFKIAA----------NIDFPLPASFIWDMFVRVL 77

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYP---ESPLSLPISPANAIWLAKNLADIIDI 158
           P    +     + +       LP ++           LS          LA  +AD+ D 
Sbjct: 78  PEIPKESAFNKSSMSWKLMAILPGMLPGEAFTMLRHYLSDDDDKRKLFQLASRVADLFDQ 137

Query: 159 IETEEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217
                 +W +        +      +    L  A   +T RL +             +  
Sbjct: 138 YLVYRPQWLNGWEKGQLTEGLGDAQIWQAPLWAALVEYTRRLGQPEW-HRANLYRRFISR 196

Query: 218 EAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                 +       + I G +   P   + +  +  H    ++      H    I +   
Sbjct: 197 LENSSTRPPNLPDRVFICGISALPPVYLQALQALGKHIEIYLLFTNPCRHYWADIQDYAF 256

Query: 276 EKSTNITSSNTTYSTHP--------------------QYSLAKLLDFLDIKREDVKRLGN 315
                           P                    Q S   L  +  + R+++  L +
Sbjct: 257 LAKLQSRHRRHYQDNRPIPQFRDADNASSLFNDAGEQQLSNPLLASWGKLGRDNLYLLAD 316

Query: 316 VSNE-------------MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
           +  +             +      + +         + +          +      V + 
Sbjct: 317 MEPDEVFAFVDIEPINLLQTLKRDLLELEDHAVIGLLESEWENSRSKRVLNADDRSVEIH 376

Query: 363 EADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFGINI 413
              + + E   +   L   + ++     +   ++ AD +        +         +  
Sbjct: 377 LCHSPQREVEVLQDRLLAMMADDPKLTARDIIVMVADIDAYTPFIQAVFGNAPADRAVPF 436

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNAL 471
            IS               SLL+          +  L++ P    +F   E+ LS  ++ +
Sbjct: 437 AISDRRASQAHPALQAFISLLSLPDSRFTAEEVLALLEVPAVASRFAIDEEGLSLLRHWV 496

Query: 472 ELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
               +R   +   + +L        +                           + +  L+
Sbjct: 497 AESGVRWGLDDDSVRELDLPATGQHTWHFGLTRMLLGYAMNSEAGDWQGILPFDESSGLI 556

Query: 525 DHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
             +   +  L+      +        +  W  L    L +    +      L   E  + 
Sbjct: 557 AELAGNLAELLMQLNRWQQWLSEPRELDSWLPLCRRMLDDFFNSDAETDAALALIE--EQ 614

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                +  ++ G           D ++  +D + +  +      +     +  R + F  
Sbjct: 615 WQQAINYGVQAGYRQAVPLTLLRDELSSRLDQQRISQRFLAGP-VNFCTLMPMRSIPFKV 673

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRS 702
           + L G+N+GV+P+      F   +M   L      +         E  N   + L  +  
Sbjct: 674 VCLLGMNDGVYPRTLPPLGF--DLMSQQLQKGDRSRRDDDRYLFLEALNSAQQQLYISYI 731

Query: 703 LRE--NNIPTIASRWLQRLLVL------------------------GGTDFFDNLKKRGQ 736
            R   +N     S  +  L+                                  +    +
Sbjct: 732 ARSIQDNTERFPSVLVSELVEYISQSFCLAEDSARDVDSSAEAVVKHLHHLHSRMPFAAE 791

Query: 737 CYLDWTRKLDYTTKQPHYK--RPKPFPPLEAQPRTYSFS-----EIKQLINDPYAVYARR 789
            +        +  +       +    PP        S +     ++ +    P   +   
Sbjct: 792 NFSPQAEFRSFAAEWLPAASGQGTAHPPFMRALPEESETVIGFDKLVRFWRHPVRAFFSL 851

Query: 790 ILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            L + F       PD       G   + + + L+   I+ N  +                
Sbjct: 852 RLGVSFQLEETGLPDAEPFSLDGLSRYQVNSLLLNSLIDGNEGDKL-----YTRQRAAGV 906

Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
                   ++                + +++ E        ++++   G+ L+G
Sbjct: 907 LPYGAFGELFWQEQEAEMSELAAQVREQRAAAE------NWEISLTLGGVTLSG 954


>gi|33595892|ref|NP_883535.1| putative nuclease/helicase [Bordetella parapertussis 12822]
 gi|33565971|emb|CAE36522.1| putative nuclease/helicase [Bordetella parapertussis]
          Length = 1134

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 78/712 (10%), Positives = 167/712 (23%), Gaps = 48/712 (6%)

Query: 228  GPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
              ++I     +      L++T+       +G  +    D       +           + 
Sbjct: 404  RHLLIDEFQDTSQGQIDLLATLTAGWQDGDGRTLFLVGDPMQSIYRFRKAEVGLFLQVAE 463

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                   P     +L D    +   V  +  V  ++  R+       +    S   +   
Sbjct: 464  QGVGQIRP--GFLQLTDNFRSQGGVVDWVNRVFAQLLPRANDADSGAIAYSPSTAFHETA 521

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
                +          A        +  + +  A     + ++   A++   R+    +  
Sbjct: 522  PGEAVRFHPAWECGDAASAERQAEDIVVGLVRAALAEHEGSRHPVAILVRARSHLGSLTR 581

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L + GI       +PL      + L  L  A+    D +A  ++++ P           
Sbjct: 582  RLAQEGIPCRAVELVPLGLRPVVADLVQLARALAHPADRLAWLSVLRAPWCGLTLTSLQR 641

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                +    V                L+   +     +                    L 
Sbjct: 642  LFGADQQTPVPT--------------LLERALRGAARSEGGQGSLFDAPAPGCLAEQALA 687

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
                + +  +     ++ +  G L ++ W +     L           P      + ++L
Sbjct: 688  PDEYRRLRAVAAILLDRANDAGLLPLAAWLEQLWRRL-----GGPGLYPGSSAASDAESL 742

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
              L  ++   G          +  +              +  T+ I+   +S+ L FDT+
Sbjct: 743  FQLIERLAPHGGLDAGLLDTAVARLFAA------PQATGEQGTVEIMTMHKSKGLQFDTV 796

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ--------AAHDFEMANGTRH 696
            IL GL+            F     +  L                   A      A  T  
Sbjct: 797  ILYGLHRAPRGDQAPLVRFEQSGGRVLLGPIKPRAETEADPVSRYLGAREARRAAYETDR 856

Query: 697  LIYTRSLR-----ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            L+Y  + R                  +            L              D     
Sbjct: 857  LLYVAATRARQRLHLVAHVAVDAASGQARTPASASLLGRLWLHLPVPQPPDVAQDQAAAT 916

Query: 752  PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                     P         +    + L  +  A         +      +       GTL
Sbjct: 917  GEQPALVGEPLRRLAGAGLASLAARTLPREAAAGAYGGGQGAEHPSWQLEAGYDAAVGTL 976

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
             H  +  +        + +   +    +     +  +P                S L+ E
Sbjct: 977  AHAWLARIGGDGPQHWSADALAVRLPAMRRQLTRAGIPAGQADAAAQAVLDTLQSTLDDE 1036

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
                   +        +  +      ++   D     + G   I DYKTG  
Sbjct: 1037 RGRWLLGQARA---RREWPLIDAAGRVS-VIDLALSTEDG-WLIVDYKTGRP 1083


>gi|319788630|ref|YP_004148105.1| exodeoxyribonuclease V subunit gamma [Pseudoxanthomonas suwonensis
           11-1]
 gi|317467142|gb|ADV28874.1| exodeoxyribonuclease V, gamma subunit [Pseudoxanthomonas suwonensis
           11-1]
          Length = 1140

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 99/952 (10%), Positives = 231/952 (24%), Gaps = 89/952 (9%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L G L +  R       LLA   + +P     + L++      G  + I     + G+ 
Sbjct: 22  ILAGILAQVLRQPAPGQSLLAPEVVLIPQVAMRRWLQATLAAEHGVAANI--EFLTPGEF 79

Query: 85  VEEKFTADLLLSYNLN-PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
           V     A+L    +     +  +        L     ++       +   +       P 
Sbjct: 80  VGRALAANLPAPRDEQGRKLDELDVETLHWHLYAALTDRALLAQPAMQRIAAHVGGDDPL 139

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV-EL 202
            A  LA  LA++ +  +   + W  L   ++                    W        
Sbjct: 140 RAWSLAGELANVFNKYQAWRRDW--LLRWEDGAGPDDPQAIL---------WRRVARGRP 188

Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
           + +  +   +         L +G    +    +    P   R+++T A   +  + +P  
Sbjct: 189 HRARRIQQYLERFDRIDGELPRGLPTRLSAFATLNVSPDVLRVIATQARVGSLHLFVPSP 248

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS--LAKLLDFLDIKREDVKRLGNVSNEM 320
                  +      ++      N               L+   ++     +   +     
Sbjct: 249 VADYWGDLQRLRRGETAQEAGENLLLQRWGAAGADFMHLVGSYELVHASAEFNVHADPAE 308

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
            G ++  S           R           +      + L        E   +A  LR 
Sbjct: 309 GGGALQGSLLRRLQADVYHRRASPGAPLRATVALDDPSLQLHACHTRLRELQVLADQLRA 368

Query: 381 SLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSS 428
             D+         ++ A++  D +        +         I   ++   PL+    + 
Sbjct: 369 LFDDPRFDPPLQPREVAVLAPDIDPYLPYLEPVFGRRGDPDAIPYALADTSPLANEPLAG 428

Query: 429 ILTSLLNAIFKLNDFMAIATLVKHP--------------LAKFGFPEKYLSRAKNALELV 474
           +   LL           +  L+  P                +            +A    
Sbjct: 429 VFLRLLALPVSRFGLHEVLDLLASPAVAEANELDAPALERLRSWLSAAGARWGIDAAHRA 488

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
            L   ++           L       ++  V     ++     EL    +D +   +  L
Sbjct: 489 RLDAPEDDAYTWSFALDRLLLGHASGSDEPVLLDDGQVVAPMPELEGSAIDALDTLVRLL 548

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                ++    G L+ + W +  +  L ++              +  ++L   F++  + 
Sbjct: 549 RVLALHERVLGGALAPAQWRERLLQLLVSLLPKPPSDPKTQRALDRLRSLVDAFAQTAKD 608

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN--EG 652
                    E +      +  E        +  + I   +  RLL F  + + G+N  E 
Sbjct: 609 AGYEAPVPSEAVRAHFAAMLSEADTRAPLLTGGVSIGRMVPMRLLPFRAICVLGMNDGEF 668

Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL----RENNI 708
                 A    L+  + +                 F         ++  S       +  
Sbjct: 669 PRRDPAAGLNRLTAELGTPDRRHGDRSTREDDRFLFLQLMAAAQDVFYVSWIGRDPRDGS 728

Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKPFPPLEAQ 766
               S  +  LL                          L   +        +P      +
Sbjct: 729 EREPSVLVSELLEAAAAQHEHPPGDTSPVTRALVVEHPLQPFSPDAFGSDGEPRRFSYRR 788

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP---------------DRTDRGTL 811
               + ++     +     +  + L                              +    
Sbjct: 789 DWREAAAQPSAQRSPLAPWFNGQALPAPPPADEPVGAIPVLPLEALRRFLLNPAREFLNR 848

Query: 812 FHNIITEL------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL------ 859
               + E+      ++       P    L+++ +     + +  P    + R        
Sbjct: 849 VRVRLPEVESHGEDLEPLAAPAEPLERTLLQRAVFESLLRGDDAPTTHALLRARGLLPSG 908

Query: 860 ------FHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFAD 903
                   + + S L    +  +S            +  I+  G  L G  D
Sbjct: 909 ASGRSVLERQARSLLPW-REAFASWRGTDEPQSRVFEATIDGTG--LRGQVD 957


>gi|87200013|ref|YP_497270.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135694|gb|ABD26436.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444]
          Length = 1161

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 88/830 (10%), Positives = 184/830 (22%), Gaps = 105/830 (12%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG--------TK 227
                    A    +  +  W                                        
Sbjct: 335  DLADLLETALGVGRRFALAWDAAKTREGFIDFDDQIRTAAELLTRRTTAEWIRFKLDRRF 394

Query: 228  GPIIIAGSTGSIPATARLMSTV----------ANHPNGAIVLPGLDCHIPTAIWNTITEK 277
              I++  +  +  +  +++                P    +    D       +   + +
Sbjct: 395  DHILVDEAQDTNASQWQIVLEGLVSDFFTGEGQRGPAVRTLFVVGDYKQAIFGFQGTSPE 454

Query: 278  STNITSSNTTYSTHPQYSLAK------LLDFLDIKREDVKRLGNVSNEMYGR-------- 323
            +    S           ++ +      L   L         +    +   GR        
Sbjct: 455  NFARASIRVKEQLAEVSAILRDPERELLELGLGQSFRTAAPILGFVDAAIGRIGWDRFGL 514

Query: 324  ----SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                                   D       + +          +  +RE A  IA  +R
Sbjct: 515  SQMPEQHKGLPIPGTVGLWRVVGDDAGEPGEDGEDTDEGEEGWLSRPDRELADRIARQVR 574

Query: 380  MSLD--------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
              +D                     L+   + LA  +   L   G+ +     + L   L
Sbjct: 575  AWIDVGFPLGKGDTPRLANAGDVMILVRKRKELAGLIVARLHARGVPVAGVDRLRLGAPL 634

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                L + L    +  D + +A L+  PL  +   +      +   E +     +N    
Sbjct: 635  AVKDLVAALRFAAQPLDDLNLAGLLVSPLIGWSQEDLLERGYRPHGERLWEWLRRNEGPE 694

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
                   L  +  + +          L     +    LV  +       +    N     
Sbjct: 695  TFEMMERLRALLARADFDPPQVLLHWLLVGPWDGRRKLVARLGGEANDPIDELLNAAMAY 754

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
             + ++                         WF+     L     K       +  +  + 
Sbjct: 755  ASANVPSLVGFLQ-----------------WFDAGEGELKREAGKSDGLVRVMTVHGSKG 797

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            +     ++      P +     L I+              + G    V      K     
Sbjct: 798  LQAPIVILADAADDPDLSPPRGLEIVED------------VMGARRKVPLPPLRKEEKAP 845

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR-----SLRENNIPTIASRWLQRLL 720
             V++++   K A +        +         ++         R +        W  +L 
Sbjct: 846  AVIEAEAEAKRA-EREEHWRLLYVAMTRAEEALFIAGAKGKVRRTSGGELPVDSWYAQLE 904

Query: 721  VLGGTDFFD--NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
             L G   ++   L    +        +    +          P +   P        + L
Sbjct: 905  PLFGDGEWEVDPLWGGRKTIGRPQDFVGRPAQADVSPVRAALPQVLLTPVGAEPRPPRPL 964

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
                                         RGTL H +I  L +             + + 
Sbjct: 965  APSSLG---EDEASEPPTHPGPGAMIAARRGTLLHRLIERLPEVSPASREASGMAWLARA 1021

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                          D   R    + + + L H E            +P    +      +
Sbjct: 1022 G----------SDFDEAERSAMVRSALAVLNHPEWSDVFGPDSLAEVPLAAVVAGR--VV 1069

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKA 946
            +G  DR+ + +   V I D+KT   P             Q++   AAL+A
Sbjct: 1070 SGTVDRLVIGRE-RVRIVDFKTARRPPASFTEVPAAYVRQMAAYVAALEA 1118


>gi|251793052|ref|YP_003007778.1| exodeoxyribonuclease V subunit gamma [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534445|gb|ACS97691.1| exodeoxyribonuclease V, gamma subunit [Aggregatibacter aphrophilus
           NJ8700]
          Length = 1125

 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 100/961 (10%), Positives = 230/961 (23%), Gaps = 119/961 (12%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L S  + V +    Q L+ +  E  G  +        +      +  AD L   + +  
Sbjct: 29  SLQSEIVLVQSPGMAQWLQLQIAEQKGIAANFA---FPMPASFIWQLYADNLPDVSQSNQ 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +    +  L RLI  +        + L      S          LA  +AD+ D     
Sbjct: 86  FNKNAMMWRLIRLIPAYL--HQPDFQPLRHYLAHSAQSEQFKLYQLAGKIADLFDQYLVY 143

Query: 163 EKKW-------------EDLHALKNEKYGMWWLLAADFLKI---ASKYWTERLVELNASS 206
              W             + + +  +             +       +   + +       
Sbjct: 144 RPDWISAWEEHRDVEICQQIESQLSVDNDRLLAQIQQNIAWQGVLWRALVQMVKTDTGLD 203

Query: 207 PVGYQIALMRAEAEHLMKGT----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
            V ++  L R   E L +         + I G      A   +   ++ + +  +     
Sbjct: 204 LVQHRAHLHRLLLEKLRENRPLFLPERLFIFGIPALPKAYLEIFQAISQYCDVHLFFNNP 263

Query: 263 DCHIPTAI-----------WNTITEKSTNITSSNTT--------------YSTHPQYSLA 297
                  I                 ++       +                    Q    
Sbjct: 264 CEEYWGDIVDPTFIEKLALRRRTDYRNQQEKPLLSAEQVELVQQQWDVTYDQEKLQVGNP 323

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP-NIQKCF 356
            L  +  + R+    L  +  +     + I+   L           +     P N  +  
Sbjct: 324 LLASWGKLGRDFSYLLTQLEPQEISAYVEIAPRNLLSQLHHQILHLMPSGTEPLNYVEND 383

Query: 357 SDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLEL------ 406
             +      +   E  ++   L        +   K   ++ AD +        +      
Sbjct: 384 RSLTFHSCHSVMREVETLQNYLLHLFQTEPNLTPKDIIVMVADIDKYTPYIQAIFGQNSV 443

Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
               I   IS        +  +   +LL           +   +  P  +  F    L  
Sbjct: 444 PNSAIPFSISDNKLSENDVLIAGFLALLQLKESTFSAEDVLAFLDIPAIRERFA-IELQD 502

Query: 467 AKNALELVALRGNKNSYDIMDLKS-----LVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                + V   G +   +                                      + + 
Sbjct: 503 LAQIRDWVKNAGVRFGLEKNADGETNYNSWQAGLERMLLGYALREENGIWQDSLGLDNSF 562

Query: 522 LLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
            L   ++  +   +        +   + +I  W +       +           L++ ++
Sbjct: 563 GLKGQLVGRLSEFIERLFAWYQTLQHSFNIMQWQQHLTALADDFFAVTTETNETLFYIKD 622

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
              +     ++ +             D++   ++      +      +     L  R + 
Sbjct: 623 --VIQQFAEQLQDVHFEQPLVIDVVADVMNSALEENPNHYRFLAG-KVNFCTLLPMRSIP 679

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIY 699
           F  + L G+N+  +P+    N F           +             E     +  L  
Sbjct: 680 FKVVCLLGMNDDEYPRQQQANSFDLMQYHRIKGDRARRDDDRY--LFLEALLSAQEYLYI 737

Query: 700 TRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--------------R 743
           +   R   +N     S  + +LL        +NL      +                   
Sbjct: 738 SYIGRSISDNQEREPSVLVSQLLDY----IVENLPDEDNDWRALLVQQHGMTAFSRKNFE 793

Query: 744 KLDYTTKQPHYKRPKPFP-----------------PLEAQPRTYSFSEIKQLINDPYAVY 786
           K D T  Q   ++  P                         R   FS +   + +P   +
Sbjct: 794 KNDRTFSQSFAQQWLPLANSQAGRILQDFIQPMDFDAWEDERDIEFSRLVAFVKNPVKFF 853

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL--IKKRINKNTPEINHLMKQIIDSHFE 844
             R L ++F    +   D  +      N + +     + +  +  + N           +
Sbjct: 854 FERRLGVNFSEQEESIADSENF--ALDNALEKYAIHAELVEFDGDQTNAFF---ARQKVK 908

Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                     ++ +     +++F E  +   S            +  ++  I L G  DR
Sbjct: 909 GVLPRGEFATLYANQLLAETNAFKEKIDDYVSQTPHSLF-AQLAVPTKNGEITLAGNVDR 967

Query: 905 I 905
           +
Sbjct: 968 L 968


>gi|83950792|ref|ZP_00959525.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
            nubinhibens ISM]
 gi|83838691|gb|EAP77987.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
            nubinhibens ISM]
          Length = 1112

 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 77/811 (9%), Positives = 189/811 (23%), Gaps = 107/811 (13%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGY----QIALMRAEAEHLMKGTKG----PIIIA 233
             +   F +     +    +              +  L        +          I++ 
Sbjct: 326  QVLYGFARRFITAYDAAKLHRGLLDFDDLITKTRDLLTDPAVAEWVLFRLDGGIDHILVD 385

Query: 234  GSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
             +  + P   +++S +A                V    D       +     ++ +    
Sbjct: 386  EAQDTSPTQWQVISQLAQELTSGAGSRSDRPRTVFVVGDKKQSIYSFQGADPRAFDEMRD 445

Query: 285  NTTYSTHP----------QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
                              ++S       LD+        G        R +    +    
Sbjct: 446  LFDERLAHSNAPLASRVLEHSFRSSSAVLDVVDATFDGAGEAGFSADQRHIAFHDALPGR 505

Query: 335  DTSDMRNTDILENKIPNIQ-----KCFSDVALIEADNEREEAISIAIALR---------- 379
                         + P        +  +D A++ A    E A  I   +R          
Sbjct: 506  VDLWPPLDKPERPEDPPWYMPVDIRAENDPAVLLA---EEIAAQIDQMVRTRQPIPDGKG 562

Query: 380  -MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              ++        + +  R +   V       G+ +  +  + L   L    + +LL+ + 
Sbjct: 563  WRAVTPGDVLILVQSRTRPIFNEVIHACKARGLPVAGADRLRLGGELAVRDICALLSFLA 622

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
               D +++AT ++ PL  +   + +             +  ++  +       +L  +  
Sbjct: 623  TPEDDLSLATALRSPLFGWSEQDLFALAQPRG-GKYLWQALRDRAEAYPDTLAILTDLRD 681

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
            Q +         R+       A LL     +    +        +               
Sbjct: 682  QTDFLRPYDLIERVLTRHDGRARLLSRLGHEAEDGIDALLAQSLAFER------------ 729

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                     +      +W E++   +        +    +  +  + ++    ++   T 
Sbjct: 730  ------AAVDSLTGFLVWMEQDDLEIKRQLDSAGDLIRVMTVHGAKGLEAPVVILPDTTK 783

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
            +   + +S L        R L  +                             L+    +
Sbjct: 784  RRPPQGASLLASPEAAFWRPLAAEL----------------------PAALRTLDSDKKD 821

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                +      +A          +   +      S   Q    +      D +   GQ  
Sbjct: 822  AERAERDRLLYVAMTRAEKWLIVAAAGDTGTDRDSWHSQIAEGMTRVGGSDAMFPTGQGL 881

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                 + D+    P         P          +    L + P         K      
Sbjct: 882  R--VERGDWGATVPDMAAESAPVPAPLAAHFAQPAPRGTLPSAPLTPSDLPGPKALAGEA 939

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
             +        G L H ++  L     + +      L +                      
Sbjct: 940  GRDTDTALREGRLLHALLEHLPALDPSDHPRLAADLARA---EEMPDATPWLS------- 989

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-IHLTGFADRIDLLKSGFVDITD 917
                ++ + + + +  Q         +P    +  +G     G  DR+ +     + + D
Sbjct: 990  ----LATALIANPDLGQIFGPDTLAEVPLSATLPELGNRRFHGIIDRLRIAPDHVLAV-D 1044

Query: 918  YKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
            +K+        E     I  Q+    A L  
Sbjct: 1045 FKSNQVIPATPEATPLGILRQMGAYRAMLSR 1075


>gi|319646646|ref|ZP_08000875.1| AddA protein [Bacillus sp. BT1B_CT2]
 gi|317391234|gb|EFV72032.1| AddA protein [Bacillus sp. BT1B_CT2]
          Length = 1230

 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 89/841 (10%), Positives = 218/841 (25%), Gaps = 128/841 (15%)

Query: 213  ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
              + +EA    +     +++     +      ++  VA   +   +    D       + 
Sbjct: 387  EAVPSEAAKFYRHQFHEVLVDEYQDTNLVQEAILKLVAKEEHEGNLFMVGDVKQSIYRFR 446

Query: 273  TITEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDIKREDVKRLGNVS------NE 319
                          T                    D LD      K+L          +E
Sbjct: 447  LAEPLLFLSKYKRFTDDGSGSGQKIDLNKNFRSRSDILDSTNFLFKQLMGEKVGEVEYDE 506

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                 +  S        +++   +          +    V L        EA ++A  +R
Sbjct: 507  QAELKLGASYPPNEATKTELLLIETPSGAPGEEAEELEAVQL--------EARAMAGQIR 558

Query: 380  MSLDE---------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
              + E                 +   ++      A ++  E  + GI +  +        
Sbjct: 559  RLITEKFQVYDAKAKASRNIQYRDIVVLLRSMPWAPQIMDEFKQQGIPVYANLSTGYFEA 618

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
               S+  SLL  I      + +A++++ P+      E  L R K+               
Sbjct: 619  TEVSVTLSLLKIIDNAYQDIPLASVLRSPVVGLDENELSLIRIKDKKAPFYEAMKAYLAA 678

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                + L       ++ +  +  W++          +  +    + +  +      K   
Sbjct: 679  ADGDERLSEKL---RRFDGLLKKWRAYAKNHSVAELIWEIYRDTKYLDYVGGMPGGKQRQ 735

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                ++ D  +              R +  +    +    +   S+  +    +  ++ +
Sbjct: 736  ANLRALYDRARSYEATSFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSK 795

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF----------------------- 641
             ++       G      +   +  ++L         F                       
Sbjct: 796  GLEFPVVFTAGLGRNFNMMDLNKSYLLDKELGFGTKFIHPKWRISYPTLPLIAMKKKLRR 855

Query: 642  ---------DTLILGGLNEGVWPKNTAKNP--FLSRVMQSDLN----LKTAEKYIGQAAH 686
                       + L    E ++   TAK+    L+            L   E++  ++  
Sbjct: 856  ELLSEELRVLYVALTRAKEKLYLVGTAKDKEKLLADWRTQAAGSEWLLPDYERFQAKSYL 915

Query: 687  DFE--MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
            DF        R +  + +    +         Q   +       + + + G+   D   +
Sbjct: 916  DFIGPALMRHRDMDESGAPPVIDEIREHPARFQVSWLSAADLQAEAVDQAGEERHDRLVQ 975

Query: 745  LDYTTKQPHYKRPK-----------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
            +            +           P+          S SE+K+          R +++ 
Sbjct: 976  IQMGHAIEGAFEYEQQVRERLAWSYPYKDAAKVRTKQSVSEMKRQKEYEDEYGDRSLIRP 1035

Query: 794  --------DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                           K     +RGT  H ++  +          E++ L+ ++++     
Sbjct: 1036 SQEALLFKRPSFMMAKGLTAAERGTAMHTVMQHIPLT-RTPEKNELSRLLDRLVEKELLT 1094

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEE-KIQSSIEKIFVNIPAKMAI-----------ES 893
            E+    I+            +F + E  +      ++   +P  M +             
Sbjct: 1095 EDQRAAIE-------EDDILAFFDTEIGQKLLGARRVEREVPFNMTLSAKEVYPDLESAD 1147

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAAL 944
              + + G  D +   + G   + DYKT    G         +       + Q+ L A A+
Sbjct: 1148 EPVLIQGIIDCLFETEDG-FYLLDYKTDRIHGKYRNGFEGAEPILRKRYETQIQLYARAV 1206

Query: 945  K 945
            +
Sbjct: 1207 E 1207


>gi|321314788|ref|YP_004207075.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis BSn5]
 gi|320021062|gb|ADV96048.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis BSn5]
          Length = 1232

 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 102/837 (12%), Positives = 218/837 (26%), Gaps = 122/837 (14%)

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITE 276
            EA    +     +++     +      ++  V + P     +    D       +     
Sbjct: 392  EAARFYQEQFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEP 451

Query: 277  KSTNITSSNTTYSTHPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
                      T S                  D LD      K+L              ++
Sbjct: 452  LLFLSKYKRFTESGEGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGK-IGEVDYDEQAE 510

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--------- 380
              L     D   T+     I N +   +     E +  + EA +IA  +R          
Sbjct: 511  LKLGAAYPDNDETETELLLIDNAEDTDASEEAEELETVQFEAKAIAKEIRKLISSPFKVY 570

Query: 381  ------SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                    +   +   ++      A ++  EL   GI +  +        +  ++  S+L
Sbjct: 571  DGKTKTHRNIQYRDIVILLRSMPWAPQIMEELRAQGIPVYANLTSGYFEAVEVAVALSVL 630

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
              I      + +A++++ P+      E  L R +N                     L   
Sbjct: 631  KVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRNDELYQK 690

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                     H+  W++          +  V    + +  +      K        + D  
Sbjct: 691  LNTFYG---HLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRA 747

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            +   +          R +  +    +    +   S+  +    +  ++ + ++       
Sbjct: 748  RQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFAA 807

Query: 615  GETVKPKIEK------------------SSTLFILGT--------------LESRLLNFD 642
            G      +                       L I                 L S  L   
Sbjct: 808  GLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVL 867

Query: 643  TLILGGLNEGVWPKNTAKNP------FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
             + L    E ++   + K+       + +   Q+D  L   ++Y  +   DF      RH
Sbjct: 868  YVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQAKTYLDFIGPALARH 927

Query: 697  L---IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP- 752
                         +I    +R+  ++ +       D+L++R +   +    +      P 
Sbjct: 928  RDLEDLAGVPAHADISDHPARFAVQM-IHSHDLLDDDLEERMEEKSERLEAIRRGEPVPG 986

Query: 753  ----------HYKRPKPFPPLEAQPRTYSFSEIKQLI--------NDPYAVYARRILKLD 794
                            P   +       S SEIK+            P       IL   
Sbjct: 987  SFAFDEKAREQLSWTYPHHEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKPADGSILFRR 1046

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                 KK     ++GT  H ++  +    +  +  E    + ++ +     E     ID 
Sbjct: 1047 PAFMMKKGLTAAEKGTAMHTVMQHIPLSHV-PSIEEAEQTVHRLYEKELLTEEQKDAID- 1104

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGFAD 903
                   +I   F           +     IP  +A+               + + G  D
Sbjct: 1105 -----IEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAQEADEPLLVQGIID 1159

Query: 904  RIDLLKSGFVDITDYKT------------GDNPKKETAQKLIDPQLSLEAAALKAGS 948
             +   + G + + DYK+            G  P  +      + Q+ L   A++  +
Sbjct: 1160 CLYETEDG-LYLLDYKSDRIEGKFQHGFEGAAPILKKR---YETQIQLYTKAVEQIA 1212


>gi|164687185|ref|ZP_02211213.1| hypothetical protein CLOBAR_00826 [Clostridium bartlettii DSM 16795]
 gi|164603609|gb|EDQ97074.1| hypothetical protein CLOBAR_00826 [Clostridium bartlettii DSM 16795]
          Length = 1151

 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 80/256 (31%), Gaps = 29/256 (11%)

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
            +    S S +++  + P+A + +  LK       +      D GT  HNI+ E  K    
Sbjct: 774  ETHNLSVSRLEKYSSCPFAYFIQYGLKAQERK--EYTFAAPDLGTFIHNIMYEFSKSLEK 831

Query: 826  KNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS--HSFLEHEE 872
                               ++  +I                  +   K+      +   +
Sbjct: 832  DGLHWSQINDAYIEKKVVSIVDAMISQIPGFILNSSPRYKYLSYRLKKMLMAAINIIAIQ 891

Query: 873  KIQSSIEKIFVNIPA---------KMAIESIG-IHLTGFADRIDL---LKSGFVDITDYK 919
                  E I   +           ++ +E    I+L G  DRID        ++ I DYK
Sbjct: 892  IKSGEFEPIDYEVNFGQTGKYPPIRIVLEDGTQINLIGQIDRIDEFDENDDRYIRIIDYK 951

Query: 920  TG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
            +   N         +  QL +   A+   +  + +    A + Y ++           ++
Sbjct: 952  SSDKNINLTEVYYGLQLQLLVYLDAILESAMKKGNSIYPAAILYCKIDNPIAKFNENKEE 1011

Query: 979  KKYSADELSEKSLKNL 994
            ++   + L +  +K L
Sbjct: 1012 EQIDEEILKQSKMKGL 1027


>gi|268590559|ref|ZP_06124780.1| exodeoxyribonuclease V, gamma subunit [Providencia rettgeri DSM
           1131]
 gi|291313946|gb|EFE54399.1| exodeoxyribonuclease V, gamma subunit [Providencia rettgeri DSM
           1131]
          Length = 1124

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 88/771 (11%), Positives = 194/771 (25%), Gaps = 101/771 (13%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++  L+   +       P          I V +    Q L+ E  +  G  + I     
Sbjct: 11  DLLKDLMTHLMKNEPLSHPFEQE-----IILVQSPGMSQWLQIELAKQFGIAANIS---Y 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         +      +L  ++    N+             L   
Sbjct: 63  PLPATFIWDMFRRVLPDIPKESAYTKQAMTWKLMTILPTVINEEEFEPLK----HYLQED 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKYGMWWL-LAADFLKIA 191
                   LA  +AD+ D       +W       E +  L   +    W       L   
Sbjct: 119 TDKRKLHQLAGRIADLFDQYLVYRPQWVGVWQKNELIEGLSENQL---WQKRLWQCLVEY 175

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------KGPIIIAGSTGSIPATARL 245
           S    +         P  ++  L +   + L             I I G +   P   + 
Sbjct: 176 SNELKQ---------PPWHRANLYQHFIDTLSLNPDLGKLLPKRIFICGISSLPPVYLQA 226

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------- 298
           ++ +A H +  ++      +    I +                  H              
Sbjct: 227 INAIAEHTDVHLMFTNPCRYYWGDIQSASFLARLQQRKLRHYLDKHEISRFKLEEHIPNL 286

Query: 299 ------------LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                       LL        D     +  +     S  +         +  ++   LE
Sbjct: 287 FNENGEQDIANPLLASWGRLGRDNLYFISQIDSANEISAYVDTERANLLENVQQDILDLE 346

Query: 347 NKIP---------------NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KK 387
           N                   I +    +      + + E   +   L    +++     +
Sbjct: 347 NHAQLGTTLENYETSIGKRPINELDDSITFHLCHSAQREVEVLQDHLLSLFEQDSSLTPR 406

Query: 388 KSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              ++ AD +        +     +   I   IS    L           LL+       
Sbjct: 407 DVIVMVADIDSYAPYIQAVFGNTASTRYIPFSISDRKALQAHPILQAFIMLLDLPQSRFS 466

Query: 443 FMAIATLVK----HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-----KSLVL 493
              + +L++             E  L R       +    + ++     L      +   
Sbjct: 467 TEQVLSLLEVSAFSQRFGIDESELSLLRRWVNESGIRWGLDDDNVRSFALPVIGQNTWEF 526

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKNSTCGNLSISD 552
                                   +    L   +   +  L+ T +  ++       + +
Sbjct: 527 GLSRMLLGYAMDSRNGPWNGILPYDECSGLAAQLAGKLALLINTLREWRSLLAQERLLEE 586

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
           W +L    L +  + +      L      +    +    I +G   +       D ++  
Sbjct: 587 WKELCQQLLDSYFMVDGETELVLALLT--EQWHQIIDNAIISGYEEQVPLRLIRDELSVR 644

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            D E +  +    + +     +  R + F  + L G+N+G +P+N      L   + ++ 
Sbjct: 645 FDDEKISQRFLAGA-VNFCTLMPMRSVPFKVVCLLGMNDGAYPRNIPP---LGFDLMAEK 700

Query: 673 NLKTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRL 719
            ++   K      + F  A    ++ L  +       +N P   S  +  L
Sbjct: 701 PVRGDRKRRDDDRYLFLEALNSASKQLYVSYIGLSIRDNQPCNPSVLVTEL 751


>gi|326334227|ref|ZP_08200450.1| UvrD/REP helicase [Nocardioidaceae bacterium Broad-1]
 gi|325948018|gb|EGD40135.1| UvrD/REP helicase [Nocardioidaceae bacterium Broad-1]
          Length = 1074

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 112/1046 (10%), Positives = 274/1046 (26%), Gaps = 157/1046 (15%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
              L         R            T+      A   L        G +    P  + + 
Sbjct: 93   AGLWPERREGPPRPGEDAEEEPTEPTVATYHSYASGLLSEH-----GLRIGHEPDTRLIA 147

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            D    +  A  +  +            L + +L+ +       ++      +      S 
Sbjct: 148  DATRYQLAARAVARHTHPVEKLTDYPKLAVQQLLALDSELSEHLVDPATLRAYDRNERSL 207

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                  A  +AD+   +   ++    L  ++     +        L    +   +RL  +
Sbjct: 208  -----FALEVADLNAQLADGKRVKTKLTKVEKAIDAIDKRYELLDLVDGYRRLKDRLGLM 262

Query: 203  NASSP--VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
            + S    +  ++A+   E   + +G    +++     +  A A++++ +    +G  V  
Sbjct: 263  DFSDQIALAARLAVETPEVGEIERGKFKVVLLDEYQDTSVAQAQMLARLFG--DGHPVTA 320

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              D +     W   +  +      +       + S +  ++                   
Sbjct: 321  VGDPNQAIYGWRGASVSNILEFGRDFPTRDGRRPSYSLTVNR------------------ 362

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
              RS     +      + +      E  +        +V +   +   +E + +A  +  
Sbjct: 363  --RSDARILATANHLAAQLYEGREKERLVAAEGARDGEVRVHVHETYDDELLWLADKVIE 420

Query: 381  SLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
            + +   +     ++T D + A  V   LT   I ++I     L      + + + +  + 
Sbjct: 421  AHEAVGEWKEIGVLTRDNSQAAAVFDALTAREIPVEIVGLKGLLRLPEVAEVVATMELLH 480

Query: 439  KLNDFMAIATLVKHP------------------LAKFGFPEKYLSRAKNALE-------- 472
             +    A+ TL+  P                  LA      +  +  +  LE        
Sbjct: 481  DVTANAALLTLLAGPRWAIGPRDLAILGRRSRDLAGVVGGAEEFADIERQLEAAVEGTDP 540

Query: 473  ---LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                      ++  D  D       R   +     +   +  ++E   +L   ++D    
Sbjct: 541  TEIPSLNDALEDPGDAADYDYSPQARERFKLLADELRGLRRAVNEPLLDLVRRIIDVTGI 600

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             +    +     ++   NL +          L                +E G+ L     
Sbjct: 601  DVELAASVSPAASARRDNLDLFVQAVAEFEGLDGQVTLAALLAYLEAEDEYGQGLDVATP 660

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
               ++   +  +  + ++     + G T K      +    L                  
Sbjct: 661  SEADSVKLLTVHRAKGLEWDVVFLVGVTHKKFPTGQTRSSWLTVPSVMP------AALRG 714

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
            +    P+    +      + ++       + +  A   +  A   + +   R        
Sbjct: 715  DRDDLPQLHGHDADSIDELLAERKEHERVEELRLAYVAWTRARHIQFVSCWRWSPSLKEG 774

Query: 710  TIASRWLQ-----RLLVLGGTDFFDNLKKRGQ------------------------CYLD 740
               S +++      L      D + ++  +G+                          L+
Sbjct: 775  RGPSVYVEKTREALLQWGAKPDRWADVVVKGEEESPYAALEVDLPWPINHHTPEVERRLE 834

Query: 741  WTRKLDYTTKQP------------------------HYKRPKPFPPLEAQPRTYSFSEIK 776
              R +      P                          +R +    +   P + S + + 
Sbjct: 835  AARLVREVGPGPDDLDDLTLLETVNQWDEEIERLLTEAERERAPEVVVPLPSSLSATAMS 894

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
            +L +DP    A  +      P  +K   +   GT FH  +     ++   +  ++     
Sbjct: 895  KLRDDPLGFAADLV-----RPMPRKPSSQARFGTRFHAWVEARFGQQDLFDPDDLPGRAD 949

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
              I+                     ++  +F +     +       V     + +     
Sbjct: 950  HGIEDE---------------SGLEEVIAAFEQGPFADRPPFR---VEAAFAIVLAGQ-- 989

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             + G  D +     G   I D+KT  +      Q     QL+L    +       +   K
Sbjct: 990  VVRGRIDAVYQEPDGSFLIVDWKTNQS------QNADPLQLALYR--VGWAELMGLPLSK 1041

Query: 957  VANLFYIRLKQKFKIDCITNDKKKYS 982
            V   FY     +        D+ +  
Sbjct: 1042 VRAAFYYVRSGRLVEPPGLADRGELE 1067


>gi|71275503|ref|ZP_00651789.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon]
 gi|71900751|ref|ZP_00682872.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
 gi|170729288|ref|YP_001774721.1| DNA-dependent helicase II [Xylella fastidiosa M12]
 gi|71163803|gb|EAO13519.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon]
 gi|71729481|gb|EAO31591.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
 gi|167964081|gb|ACA11091.1| DNA helicase II [Xylella fastidiosa M12]
          Length = 723

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 77/720 (10%), Positives = 171/720 (23%), Gaps = 119/720 (16%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E++         GK+      I +   +           +        + +
Sbjct: 55  VTFTNKAAGEIQQRIDLQLRHGKRGMW---IGTFHSLAHRLLRLHWNDATLPENFQVIDS 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R+I                         P  A+W        I+  + E ++
Sbjct: 112 DDQLRLVKRVIQSL--------------GLNDTLFPPKQAMWW-------INTQKDEGRR 150

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E +    ++     W+            + ER             +       +     
Sbjct: 151 PEHIQPESHDD----WIETQR---RIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALL 203

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I+I     +       +  +AN      +    D       W         
Sbjct: 204 THYRSRFREILIDEFQDTNAIQYAFVRVLANDTG--HIFAVGDDDQAIYGWRGAKV---- 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     H Q+ L    +               +  +       +      +     
Sbjct: 258 ---------EHVQHFLKDFPN-------------VQTIRLEQNYRSSANILDAANAIIAH 295

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA  I    R  + +     + A++      
Sbjct: 296 NPDRIGKRLWTESGVGESIDLYAAYNEIDEARYIVERARQWVRDGGSYGEIAVLYRSNAQ 355

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R  +  L    I   +  G+            + L  +   +D  A   +V  P+   G
Sbjct: 356 SRAFEEVLQSEHIPYRVYGGMRFFERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIG 415

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                            V     TQ             S     
Sbjct: 416 ERTLD---------------------------EVRHLARTQGLALWDAAMACTQSTTLTA 448

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            A   +   L  +  L               +   ++L     +        +      +
Sbjct: 449 RARNALASFLNLLQQLAVETNQMGLAERIDHMLQRSELRQHWKKEARGSLDAESRQENLD 508

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E     S       +  + I      ++           V         + ++    ++ 
Sbjct: 509 ELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQV---QAGEEGVQLMTLHSAKG 565

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + L GL  G++P   +              L   ++   +    +      RH L
Sbjct: 566 LEFPLVFLVGLENGLFPSARS--------------LDEHDRLEEERRLAYVGITRARHKL 611

Query: 698 IYTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
           I + +        +   + SR+L+ +      +    ++   Q  L   ++  +  +   
Sbjct: 612 ILSYAQARRIHGKDNYNVPSRFLREIPQNLLHEVRPTIQVSHQTPLGAVQRPAHDERDAA 671


>gi|142440|gb|AAA22201.1| ATP-dependent nuclease [Bacillus subtilis]
 gi|2226192|emb|CAA74482.1| ATP-dependent nuclease [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1232

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 121/1003 (12%), Positives = 258/1003 (25%), Gaps = 141/1003 (14%)

Query: 58   QELRSEFIEITGKKSTILPIIK-SLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARL 115
            + L  E  +  G  +   P     L D+ + ++          L   V  +      A  
Sbjct: 239  RAL--ELTKAPGGPA---PRADNFLDDLAQIDELIQHQDDFSELYKRVPAVSFKRAKAVK 293

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
               +   L D   DL   +     +      +  ++    +  +   +   E L  L   
Sbjct: 294  GDEFDPALLDEATDL--RNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPVIETLVQLVIS 351

Query: 176  KYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231
                +     +           Y    L   N             +EA    +     ++
Sbjct: 352  YGKRFEAAKQEKSIIDFSDLEHYCLAILTAEN--DKGER----EPSEAARFYQEQFHEVL 405

Query: 232  IAGSTGSIPATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            +     +      ++  V + P     +    D       +               T S 
Sbjct: 406  VDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESG 465

Query: 291  HPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                             D LD      K+L              ++  L     D   T+
Sbjct: 466  EGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGK-IGEVDYDEQAELKLGAAYPDNDETE 524

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---------------SLDENKKK 388
                 I N +   +     E +  + EA +IA  +R                  +   + 
Sbjct: 525  TELLLIDNAEDTDASEEAEELETVQFEAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRD 584

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
              ++      A ++  EL   GI +  +        +  ++  S+L  I      + +A+
Sbjct: 585  IVILLRSMPWAPQIMEELRAQGIPVYANLTSGYFEAVEVAVALSVLKVIDNPYQDIPLAS 644

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            +++ P+      E  L R +N                     L            H+  W
Sbjct: 645  VLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRSDELYQKLNTFYG---HLQKW 701

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
            ++          +  V    + +  +      K        + D  +   +         
Sbjct: 702  RAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRARQYESTAFRGLFRF 761

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK---- 624
             R +  +    +    +   S+  +    +  ++ + ++     + G      +      
Sbjct: 762  LRFIERMQERGDDLGTARGLSEQEDVVRLMTIHSSKGLEFPVVFVAGLGRNFNMMDLNKS 821

Query: 625  --------------SSTLFILGT--------------LESRLLNFDTLILGGLNEGVWPK 656
                             L I                 L S  L    + L    E ++  
Sbjct: 822  YLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVLYVALTRAKEKLFLI 881

Query: 657  NTAKNP------FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL---IYTRSLRENN 707
             + K+       + +   Q+D  L   ++Y  +   DF      RH             +
Sbjct: 882  GSCKDHQKQLAKWQASASQTDWLLPEFDRYQARTYLDFIGPALARHRDLGDLAGVPAHAD 941

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-----------HYKR 756
            I    +R+  ++ +       D+L++R +   +    +      P               
Sbjct: 942  ISGHPARFAVQM-IHSYDLLDDDLEERMEEKSERLEAIRRGEPVPGSFAFDEKAREQLSW 1000

Query: 757  PKPFPPLEAQPRTYSFSEIKQLI--------NDPYAVYARRILKLDFIPHFKKDPDRTDR 808
              P   +       S SEIK+            P       IL        KK     ++
Sbjct: 1001 TYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKPADGSILYRRPAFMMKKGLTAAEK 1060

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            GT  H ++  +    +  +  E    + ++ +     E     ID        +I   F 
Sbjct: 1061 GTAMHTVMQHIPLSHV-PSIEEAEQTVHRLYEKELLTEEQKDAID------IEEIVQFFH 1113

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGFADRIDLLKSGFVDITD 917
                      +     IP  +A+               + + G  D +   + G + + D
Sbjct: 1114 TEIGGQLIGAKWKDREIPFSLALPAKEIYPDAHEADEPLLVQGIIDCLYETEDG-LYLLD 1172

Query: 918  YKT------------GDNPKKETAQKLIDPQLSLEAAALKAGS 948
            YK+            G  P  +      + Q+ L   A++  +
Sbjct: 1173 YKSDRIEGKFQHGFEGAAPILKKR---YETQIQLYTKAVEQIA 1212


>gi|148262661|ref|YP_001229367.1| exodeoxyribonuclease V, gamma subunit [Geobacter uraniireducens
           Rf4]
 gi|146396161|gb|ABQ24794.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Geobacter
           uraniireducens Rf4]
          Length = 1091

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 108/955 (11%), Positives = 238/955 (24%), Gaps = 107/955 (11%)

Query: 19  REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78
             ++  L    +VE     P  P      TI V +K   + L  E     G  +      
Sbjct: 12  ETLVDQL--AGVVEKPLPSPFTPE-----TIVVQSKGMQRWLAMELARRFGVWANGE--- 61

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
               + V E     ++      P VS+    +   RL+ +  + L     +      L+ 
Sbjct: 62  FPFPNAVVETLFRAVIPDLAETPQVSSFHPDVLTWRLMELLPSCLGGPGFEPLA-GYLAD 120

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                  + LA+ +AD  D         E L + +    G W  L    L          
Sbjct: 121 DGDGLKRLQLAEKIADTFDQYTIYR--PELLLSWEEGAEGGWQGLLWRELV------RNA 172

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                A+    ++  + R +           I + G     P    ++S +A      + 
Sbjct: 173 TDRHRAALLAEFRRRINRPDTAAAELPR--RISLIGIPTLPPFHMEVLSGIARQTEINLF 230

Query: 259 LPGLDCHIPTAIWNTIT-EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
           L          I +     +             + +     L     I R+    L    
Sbjct: 231 LLNPCREYWGKIVSERELARLERRGLDEDPLHGYFETGNPLLASMGRIGRDFFDSLIGDC 290

Query: 318 NEMYG-----RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
            +                                     I+     + +    +   E  
Sbjct: 291 GDAEFSDTFTEIRGSGLLHAIQANILDLRDRGAAGDREVIEATDDTLRIHSCHSAMREIE 350

Query: 373 SIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLS 422
            +   +    D +     +   ++T D          +          I   I+      
Sbjct: 351 VLYDQILSLFDNDPTLSPRDILVMTPDIEAYAPYISAVFGTPEQPEQRIPYSIADRSLRR 410

Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKH--------------PLAKFGFPEKYLSRAK 468
               + +L ++L           +  +++                          +    
Sbjct: 411 EGETAEVLLAILQLCGSRFAITEVLDILEAAPVCRRFGLTDKDLETVHQWLTATNIRWGI 470

Query: 469 NALELVALRGNKNSYDIM--DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
           +A+E         S +     L  L+L      ++             E  +        
Sbjct: 471 DAMERTGHGVPAFSENSWQAGLDRLILGYAMAGEDRHFFGEILPYDHLEGSDAL-----L 525

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           + + +    T  +   +      I +WT +  + L            +   E +  TL  
Sbjct: 526 LGRFLEFCETLFSRVQALARPRQIEEWTAVLRSLL------GTFIKADGDDERDVATLLK 579

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS---STLFILGTLESRLLNFDT 643
           +  ++ E  +         I+I+   +  +    +         +     L  R + F  
Sbjct: 580 VIERLDECRAHANFGGDVGIEIVRAWLGEKLGSEQRGFGFLTGGVTFCAMLPMRSIPFRV 639

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
           + L G+N+GV+P+    + F           ++             + +       +   
Sbjct: 640 IALLGMNDGVFPRRNRPHGFDLIAASPRRGDRSQRDEDRYL-FLEALLSARERFSISYVG 698

Query: 704 RE--NNIPTIASRWLQRL-------LVLGGTDFFDNLKKRGQCYLDWTRK---------- 744
           +   +N     S  +  L           G +  +    RG       +           
Sbjct: 699 QSIKDNSELPPSVLVSELLDYIAKGFTRAGEEADETAAVRGISVRHPLQPFSRDYFRPND 758

Query: 745 --------------LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
                         L               P   A+    +  ++ +   +P   + RR 
Sbjct: 759 GRLFSYSRENLHGVLAAIAPPAVPATFLSRPLPPAEETLVTLYDLAEFFANPCKHFLRRR 818

Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
           L +  +    +    ++  +L H     L ++ +       +    + +      E  P 
Sbjct: 819 LGIY-LEQRDESFAESEPFSLDHLGKYMLGQEIVAALLAGESLDNHRAVARS-RGELPPG 876

Query: 851 HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
               I        +  F     +  ++        P ++ +E     L G  +RI
Sbjct: 877 ECGTITYDTLASAASDF----AEQVAAATVGAPLPPLEIDLEFKESRLVGRIERI 927


>gi|320093577|ref|ZP_08025467.1| RecB family exonuclease [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979475|gb|EFW10947.1| RecB family exonuclease [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 285

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 72/269 (26%), Gaps = 27/269 (10%)

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
             P P   +     S S  K+    P       I               T  GTL H ++ 
Sbjct: 6    APRPGPRSWEPALSASRAKEYERCPLQYRLHVIDGYREP-----ATRATAMGTLIHAVLE 60

Query: 818  ELIKKRINKNTPEINHLM-----KQIIDS--HFEKENLPPHIDIIWRHLFHKISHSFLEH 870
            +L        T E    M     + ++                  W      +   +   
Sbjct: 61   DLYGLEAPGRTEEAAQEMVGDRFEALLRRDPTVGALFDDDGDRQRWLGEVRAVLGQYFAI 120

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
            E+     I         + +  + G+ L GF DRID    G + + DYKTG  P     +
Sbjct: 121  EDPKW--IAPWAREKNVEASTRA-GVRLRGFIDRIDRAPDGRLRVVDYKTGKAPSPRFTE 177

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
            + +  Q+   A  L   +         A +  + LK    +            +E  E+ 
Sbjct: 178  EAL-FQMRFYALLLMRTAVL------PARMQLVYLKSGRVLTLDPFPGDIERFEERVEEL 230

Query: 991  LKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
               +   V         F           
Sbjct: 231  WGRIEADVR-----GDGFAPRKNPLCNWC 254


>gi|28197981|ref|NP_778295.1| DNA-dependent helicase II [Xylella fastidiosa Temecula1]
 gi|28056041|gb|AAO27944.1| DNA helicase II [Xylella fastidiosa Temecula1]
 gi|307579063|gb|ADN63032.1| DNA-dependent helicase II [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 728

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 78/720 (10%), Positives = 170/720 (23%), Gaps = 119/720 (16%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E++         GK+      I +   +           +        + +
Sbjct: 60  VTFTNKAAGEIQQRIDLQLRHGKRGMW---IGTFHSLAHRLLRLHWNDATLPENFQVIDS 116

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R+I                         P  A+W        I+  + E ++
Sbjct: 117 DDQLRLVKRVIQSL--------------GLNDTLFPPKQAMWW-------INTQKDEGRR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E +    ++     W+            + ER             +       +     
Sbjct: 156 PEHIQPESHDD----WIETQR---RIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALL 208

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I+I     +       +  +AN      +    D       W         
Sbjct: 209 THYRSRFREILIDEFQDTNAIQYAFVRVLANDTG--HIFAVGDDDQAIYGWRGAKV---- 262

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     H Q+ L    +               +  +       +      +     
Sbjct: 263 ---------EHVQHFLKDFPN-------------VQTIRLEQNYRSSANILDAANAIIAH 300

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA  I    R  + +     + A++      
Sbjct: 301 NPDRIGKRLWTESGVGESIDLYAAYNEIDEARYIVERARQWVRDGGSYGEIAVLYRSNAQ 360

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R  +  L    I   +  G+            + L  +   +D  A   +V  P+   G
Sbjct: 361 SRAFEEVLQSEHIPYRVYGGMRFFERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIG 420

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                            V     TQ             S     
Sbjct: 421 ERTLD---------------------------EVRHLARTQGLALWDAAMACTQSTTLTA 453

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            A   +   L  +  L       +       +   ++L     +        +      +
Sbjct: 454 RARNALASFLNLLQQLALETNQMDLAERIDHMLQRSELRQHWKKEARGSLDAESRQENLD 513

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E     S       +  + I      ++           V         + ++    ++ 
Sbjct: 514 ELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQV---QAGEEGVQLMTLHSAKG 570

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + L GL             F S     +      E+ +      +      RH L
Sbjct: 571 LEFPLVFLVGL---------ENGLFPSARSLDEHGRLEEERRLA-----YVGITRARHKL 616

Query: 698 IYTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
           I + +        +   + SR+L+ +      +    ++   Q  L  T++  +  +   
Sbjct: 617 ILSYAQARRIHGKDNYNVPSRFLREIPQDLLHEVRPTIQVSHQPPLGATQRPAHDERDAA 676


>gi|145630036|ref|ZP_01785818.1| phosphopyruvate hydratase [Haemophilus influenzae R3021]
 gi|144984317|gb|EDJ91740.1| phosphopyruvate hydratase [Haemophilus influenzae R3021]
          Length = 1117

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 116/966 (12%), Positives = 240/966 (24%), Gaps = 124/966 (12%)

Query: 39  LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94
           L P        I V +    Q L+ E  + TG  + +   +P        + + +T +L 
Sbjct: 24  LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQLYTQNLP 78

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
            +  L  P      +  L RLI  +  K  +    L      S          L+  +AD
Sbjct: 79  ATA-LENPFDKDSMMWRLMRLIPTFLEK--ESFSPLRNYLASSPHSEQYKLYQLSSKIAD 135

Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + D       +W             + +   +       +       K   + W   +V+
Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNDTLFAQIQGNTKWQGELWRALVVD 195

Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                  A+         +   A+    K     I I G      A   ++  +++  + 
Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297
            +            I +   +   +            Q   +                  
Sbjct: 256 HLFFNNPCQEYWGDISDLRFDYLRSRKRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315

Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                          +                 Y  +                    LEN
Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
           K  NI K    + L    +   E   +   L    +++     K   ++ AD N      
Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSLTPKDVVVMVADINQYTPYI 435

Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             +          I   +S      + +  S   +LL           +  L+  P  + 
Sbjct: 436 QAVFGQKNGDAPQIPFSLSDNKLSESDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
            F             +             D  +    +   ++        + +   +D 
Sbjct: 496 RFNISLADLPLVREWVTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555

Query: 518 ELA-------VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                       L   + Q  T L              SI  W ++    L +  +    
Sbjct: 556 LGLNSSYGLKGELAGKLSQFFTVLSALYETLQQA---HSIEKWQEILTALLSDFFVRNED 612

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEKSST 627
               +++ +         +++ E    +        ++I  +I     +        +  
Sbjct: 613 TSDMIFYIQ------EKINELAEHLKTLHFTEELQAEVIADVITMKLEDAPNSLKFLAGK 666

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
           +     L  R + F  + L G+N+  +P+    N F           +            
Sbjct: 667 VNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY--LF 724

Query: 688 FEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC------- 737
            E     R     +   R   +N P   S  + +LL        +N+    +        
Sbjct: 725 LEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQNENVLTVTEHPMTAFSP 784

Query: 738 -------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                           W     +     + +          +        +   + +P  
Sbjct: 785 DNFKYNEKFTRSFATKWLPIAQFDASSNNSEFAVTMTENPEKIEEVELDSLVSFVENPVK 844

Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
            +  + L + F    ++  D  +  TL  + +        N                   
Sbjct: 845 FFFEKQLGVYFRDKDERIADSENF-TL--SGLDNY--SLNNDLIYLDEQNFTDYFRQAEV 899

Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----SIGIHLTG 900
           K  LP       +     I ++ LE +EKI    E    +I   +A++    +  I L G
Sbjct: 900 KGVLPRA--EFGKVYAENIRNNVLEFKEKIVDLGEPKQASIDFNIAVDWQNENQKIRLFG 957

Query: 901 FADRID 906
           + D + 
Sbjct: 958 YVDALF 963


>gi|71899705|ref|ZP_00681857.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
 gi|71730500|gb|EAO32579.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
          Length = 723

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 74/719 (10%), Positives = 167/719 (23%), Gaps = 117/719 (16%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E++         GK+      I +   +           +        + +
Sbjct: 55  VTFTNKAAGEIQQRIDLQLRHGKRGMW---IGTFHSLAHRLLRLHWNDATLPENFQVIDS 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R+I                         P  A+W        I+  + E ++
Sbjct: 112 DDQLRLVKRVIQSL--------------GLNDTLFPPKQAMWW-------INTQKDEGRR 150

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E +    ++     W+            + ER             +       +     
Sbjct: 151 PEHIQPESHDD----WIETQR---RIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALL 203

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I+I     +       +  +AN      +    D       W         
Sbjct: 204 THYRSRFREILIDEFQDTNAIQYAFVRVLANDTG--HIFAVGDDDQAIYGWRGAKV---- 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     H Q+ L    +               +  +       +      +     
Sbjct: 258 ---------EHVQHFLKDFPN-------------VQTIRLEQNYRSSANILDAANAIIAH 295

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA  I    R  + +     + A++      
Sbjct: 296 NPDRIGKRLWTESGVGESIDLYAAYNEIDEARYIVERARQWVRDGGSYGEIAVLYRSNAQ 355

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R  +  L    +   +  G+            + L  +   +D  A   +V  P+   G
Sbjct: 356 SRAFEEVLQSEHMPYRVYGGMRFFERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIG 415

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                            V     TQ             S     
Sbjct: 416 ERTLD---------------------------EVRHLARTQGLALWDAAMACTQSTTLTA 448

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            A   +   L  +  L       +       +   ++L     +        +      +
Sbjct: 449 RARNALASFLNLLQQLALETNQMDLAERIDHMLQRSELRQHWKKEARGSLDAESRQENLD 508

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E     S       +  + I      ++           V         + ++    ++ 
Sbjct: 509 ELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQV---QAGEEGVQLMTLHSAKG 565

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F  + L GL             F S     +      E+ +        +      LI
Sbjct: 566 LEFPLVFLVGL---------ENGLFPSARCLDEHGRLEEERRLAYVG----ITRARHKLI 612

Query: 699 YTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
            + +        +   + SR+L+ +      +    ++   Q  L   ++  +  +   
Sbjct: 613 LSYAQARRIHGKDNYNVPSRFLREIPQDLLHEVRPTIQVSHQPPLGAAQRPAHDERDAA 671


>gi|255326995|ref|ZP_05368071.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296212|gb|EET75553.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
          Length = 1292

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 117/994 (11%), Positives = 232/994 (23%), Gaps = 165/994 (16%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI----IKSLGD 83
             L E       +    A + I  PT+ A   +R      + +  ++ P       +   
Sbjct: 16  HHLTERALRYLADGNDPARLLILAPTRTAATRMRDTIAASSDRSLSVAPTRAWAAYAFDL 75

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
           +   +    L         +S  ++ + +  L+      +          +   +     
Sbjct: 76  LKRAQTRGLLSGVEGNLKLLSGPEQDVIIGELLANHAEGIAP------GPAWPDVLRDAL 129

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                   + D  D +   +   ED+HAL  E     W   A             L   N
Sbjct: 130 ATRGFRHEIRDFFDRMAEYDLTAEDVHALATEHNQPAWHALAQLHTEYRAV--RALRAKN 187

Query: 204 ASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH------ 252
           A  P        ++ L   E     +     I+I       P+  RL+  +A        
Sbjct: 188 AYDPAVLINDACRLLLRAPEFLAEERRRYDLILIDDVQELSPSIYRLLRLIAAEVAPADA 247

Query: 253 -----------PNGAIVLPGLDCHIPTAIWNTITEKSTN----ITSSNTTYSTHPQYSLA 297
                        G  V+           +                S  T +    Y L 
Sbjct: 248 AHLTETHPDLFAEGPQVVMTYSDEAVVQGFRGARPDLVTTLQSSFPSMRTRTLTTSYRLP 307

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRS----------------MVISKSFLPPDTSDMRN 341
            L+  L                +                        +    P    +  
Sbjct: 308 ALMMPLVADIRRRLPRYTRFVPLTAEQEGAKNGAQGGVKNGAPATFGRINTTPADEALTW 367

Query: 342 TDILEN-----------KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKK 387
               E               + +   + V      + ++EA  IA  L       +   +
Sbjct: 368 GAADEPLLHLGADGKILDPAHYRTAPAGVYKYALSSSQDEANLIAQMLLEERIYGNHPYR 427

Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTS-------------- 432
           +SA+I        R++  L+  GI    SA + P+                         
Sbjct: 428 ESAIIVRSSADVARIRRVLSSNGIPSRTSAALVPVRDEPAVRPFLDALSLLVYARKRGEK 487

Query: 433 --------------------------------LLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                                               + +  D +       +PL      
Sbjct: 488 ALNPAVHMPAAEGAEGTEAAERGGYETLSVTEAEELMRRSLDDVIAEESRANPLGGAQSA 547

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
              L+        + +R  +     ++L      R +       + H ++   E      
Sbjct: 548 ITLLTSRLGGASSMDVRRLRQQLRSIEL-QSGGHRPSDDLLLGALLHPETLPEEGVGRAV 606

Query: 521 VLLVDHILQCITPLVTYKTNK-NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW-FE 578
             +   +      L   ++            S   K  VT  ++   D      NL    
Sbjct: 607 HRIAAVLSAGRKALARPESTSTEVLWALWEASGLEKTWVTQSRSAGPDADAAHRNLDAMI 666

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
              +       ++   G+    + I+  D+    +    V+        + IL    +  
Sbjct: 667 GLFEAADRFDEQMRGAGAEQFLDFIDAQDLPMDTLAARGVRQ-----DAVEILTPALAAG 721

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFL--------------------------------SR 666
            ++ T+ + GL EG WP  T +   L                                  
Sbjct: 722 QSWRTVYVCGLQEGTWPNTTVRGSLLSTGDLTDLCDARLRQRAQQAEQQAGESEQPVPPA 781

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
            ++S        ++             +  L+ T    ++  P     ++     +G + 
Sbjct: 782 RIRSYPERVRDTRHDELRMFAVAATRASTRLVLTAVRNDDQAPGEFFDFVLPTDAVGDST 841

Query: 727 FFDNLK-KRGQCYLDWTRKLDYT-------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                + +R         +L  T         +    + +      AQ       E    
Sbjct: 842 DVPITRVRRPATLRSLVAELRRTLVEESMNAMRAEDAQQEDTQQNGAQMHNAPEEEALTP 901

Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
               Y + A                   D   L     TEL+      +  E++    + 
Sbjct: 902 EASAYRLDAASRTLARLANAQAPGAAPDDWWGLLPLSSTELLFAHRPADHAELDENHGED 961

Query: 839 IDSHFEKENLPPHIDIIWR--HLFHKISHSFLEH 870
            +   E     P    I         I  S L+ 
Sbjct: 962 GEEPAENPAENPGRRTITLSPSRLETIHSSPLDW 995



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/592 (10%), Positives = 156/592 (26%), Gaps = 64/592 (10%)

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G+  +    +++L++   A+ +               +         SR+       A R
Sbjct: 601  GVGRAVHRIAAVLSAGRKALARPESTSTEVLWALWEASGLEKTWVTQSRSAGPDADAAHR 660

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                   + +      +++        +    ++    D   A  +    ++ +TP +  
Sbjct: 661  NLDAMIGLFEAADRFDEQMRGAGAEQFLDFIDAQDLPMDTLAARGVRQDAVEILTPALAA 720

Query: 538  KTNKNS----------------TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
              +  +                    LS  D T L    L+       ++          
Sbjct: 721  GQSWRTVYVCGLQEGTWPNTTVRGSLLSTGDLTDLCDARLRQRAQQAEQQAGESEQPVPP 780

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
              + S   ++ +T               +  +    V+   +     F        + + 
Sbjct: 781  ARIRSYPERVRDTRHDELRMFAVAATRASTRLVLTAVRNDDQAPGEFFDFVLPTDAVGDS 840

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
              + +  +      ++       + V +S   ++  +        +    +         
Sbjct: 841  TDVPITRVRRPATLRSLVAELRRTLVEESMNAMRAEDAQQEDTQQNGAQMHNAPEEEALT 900

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY----------LDWTRKLDYTTKQ 751
                      ASR L RL          +                       +LD    +
Sbjct: 901  PEASAYRLDAASRTLARLANAQAPGAAPDDWWGLLPLSSTELLFAHRPADHAELDENHGE 960

Query: 752  PHYKRPK-PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
               +  + P      +  T S S ++ + + P          +       +       GT
Sbjct: 961  DGEEPAENPAENPGRRTITLSPSRLETIHSSPLDWL------VSAARAEAQTDLSRSLGT 1014

Query: 811  LFHNIITELIKKRINKNTPEINHLM---------KQIIDSHFEKENLPPHIDIIWRHLFH 861
            L H I  E     + +    ++  +         +   D  + +        +       
Sbjct: 1015 LVHAIAEEYPTGTLEELQNALDERISSLGVPARKEDETDEEYRERVPWESYALYE--RAK 1072

Query: 862  KISHSFLEHEEKI--QSSIEKIFVNIPAKM----------AIESIGIHLTGFADRID--- 906
            ++      +  +    +  + + V     +           +  +   LTG  DR++   
Sbjct: 1073 RMILRLSYYYRQHMGDAGWQNLGVEGSFAVRVPVPFDPAGEVGELDALLTGRVDRLEGTA 1132

Query: 907  --LLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
                 +    I D KTG + P     +    PQL+    A++AG+  Q++ R
Sbjct: 1133 PAEDGTRRYAIVDLKTGKSKPTGSEMETH--PQLAAYQIAVEAGAGEQLEER 1182


>gi|121605345|ref|YP_982674.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120594314|gb|ABM37753.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
          Length = 1141

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 94/914 (10%), Positives = 233/914 (25%), Gaps = 106/914 (11%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             TLV+  +    + +   S+ +   + +A  EL         K +  +  I +      +
Sbjct: 227  RTLVQRIQSLLTDGVDPMSILVLTFSNKAANELSERLAASNPKAAAAM-WIGTFHAFGLD 285

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                       L      +    E   L+     +LP        + P        +AI 
Sbjct: 286  IVR-RFHDKLGLP-AGPRLIDRSEGIELLEDELPRLPLHHYRNLWD-PALDLSDMLSAIS 342

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
             AK+  ++ID +              ++            + +  + +   +        
Sbjct: 343  RAKD--EVIDAVGYRALAQAMAQNCADDADATMRAEKCMEVALVYETYERLMTAKQLIDF 400

Query: 208  VGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                    ++    AE  + ++     +++        ++ RL+  +    +G  +    
Sbjct: 401  GDLVAQPVRLVEADAEVRNALRARHKHVLVDEYQDVNRSSVRLLKAIVG--DGRDLWVVG 458

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            D       +   +  +    + +   +   Q         L I     + + +V     G
Sbjct: 459  DARQSIYRFRGASATNMAQFTLDFPGAQVDQ---------LGINYRSRQEVIDVFTAFSG 509

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                 + +             +             D  ++   N+   AI+ AI  +   
Sbjct: 510  TMKASTGAL-----------PLHLKASRGASGVTPDFRVVSTTNDEISAIAAAIQAQRDA 558

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                ++ AL+ A       +   L   GI +       L        L +LL+ +     
Sbjct: 559  GTAYREQALLCASNARLSEIAEGLEARGIPVLHLG--SLFERPEIKDLLALLSMLNDPYA 616

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
                                     + +         ++   I++            +  
Sbjct: 617  VG---------------------LVRASTMPSYELPLQDIAQIIERLRESKVAALDWRLA 655

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
             + P   +  S         L D +     P     T      G   +        + ++
Sbjct: 656  GNWPPELAGTSNATLARVAALFDGMSPTGNPWTILSTWVIDRLGLAKVLYLADDAQSRMK 715

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
             + L +            G   + L  +I              + +++       +   +
Sbjct: 716  GLALWQFLNFCRQQPSGAGAPCTRLLDRIRR------------LVLLSEDRGLRHLPGVV 763

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGL-------NEGVWPKNTAKNPFLSRVMQSDLNLK 675
            +    + ++    S+ L F T+ + G+       N                   + L   
Sbjct: 764  DGIDAVRLMTIHASKGLEFHTVHIPGMVTSGLPRNNMAPRCVPPDGLIHGSDGITGLEAV 823

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
             +     +    F   +  R  ++  +     +      S++L  +  L           
Sbjct: 824  KSGHEEEEECLFFVALSRARDRLFLYASSVQSDGRARNPSKFLTSIRHLLIHS------- 876

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                    + KL            KP           + S++      P   +   +LKL
Sbjct: 877  --PNPPQRSAKLRAKACLQVAWAQKPVW---------TDSQVNLFARCPRRFFYTHVLKL 925

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                    +        +  ++   L               +    D  ++ +     ID
Sbjct: 926  GGRRT---ETAFMKMHNVVGDVFDWLKTTHEMTVP--TEAELGARFDQAWQVKG---AID 977

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913
              +   + +I+   +++  + +S    +    P  +      I +    D +     G +
Sbjct: 978  HGYAEDYRRIARRLVDYLIETRSRG-VLAPATPISLGWVEGEILV--RPDSVARGDKGQI 1034

Query: 914  DITDYKTGDNPKKE 927
             +   KTG      
Sbjct: 1035 VVRRVKTGKPRSNA 1048


>gi|221308901|ref|ZP_03590748.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            subtilis str. 168]
 gi|221313225|ref|ZP_03595030.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            subtilis str. NCIB 3610]
 gi|221318148|ref|ZP_03599442.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            subtilis str. JH642]
 gi|221322423|ref|ZP_03603717.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            subtilis str. SMY]
 gi|255767243|ref|NP_388944.2| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp.
            subtilis str. 168]
 gi|239938590|sp|P23478|ADDA_BACSU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|225184870|emb|CAB12903.2| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            subtilis str. 168]
          Length = 1232

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 121/1003 (12%), Positives = 258/1003 (25%), Gaps = 141/1003 (14%)

Query: 58   QELRSEFIEITGKKSTILPIIK-SLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARL 115
            + L  E  +  G  +   P     L D+ + ++          L   V  +      A  
Sbjct: 239  RAL--ELTKAPGGPA---PRADNFLDDLAQIDELIQHQDDFSELYKRVPAVSFKRAKAVK 293

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
               +   L D   DL   +     +      +  ++    +  +   +   E L  L   
Sbjct: 294  GDEFDPALLDEATDL--RNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPVIETLVQLVIS 351

Query: 176  KYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231
                +     +           Y    L   N             +EA    +     ++
Sbjct: 352  YGKRFEAAKQEKSIIDFSDLEHYCLAILTAEN--DKGER----EPSEAARFYQEQFHEVL 405

Query: 232  IAGSTGSIPATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            +     +      ++  V + P     +    D       +               T S 
Sbjct: 406  VDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESG 465

Query: 291  HPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                             D LD      K+L              ++  L     D   T+
Sbjct: 466  EGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGK-IGEVDYDEQAELKLGAAYPDNDETE 524

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---------------SLDENKKK 388
                 I N +   +     E +  + EA +IA  +R                  +   + 
Sbjct: 525  TELLLIDNAEDTDASEEAEELETVQFEAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRD 584

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
              ++      A ++  EL   GI +  +        +  ++  S+L  I      + +A+
Sbjct: 585  IVILLRSMPWAPQIMEELRAQGIPVYANLTSGYFEAVEVAVALSVLKVIDNPYQDIPLAS 644

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            +++ P+      E  L R +N                     L            H+  W
Sbjct: 645  VLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRSDELYQKLNTFYG---HLQKW 701

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
            ++          +  V    + +  +      K        + D  +   +         
Sbjct: 702  RAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRARQYESTAFRGLFRF 761

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK---- 624
             R +  +    +    +   S+  +    +  ++ + ++     + G      +      
Sbjct: 762  LRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFVAGLGRNFNMMDLNKS 821

Query: 625  --------------SSTLFILGT--------------LESRLLNFDTLILGGLNEGVWPK 656
                             L I                 L S  L    + L    E ++  
Sbjct: 822  YLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVLYVALTRAKEKLFLI 881

Query: 657  NTAKNP------FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL---IYTRSLRENN 707
             + K+       + +   Q+D  L   ++Y  +   DF      RH             +
Sbjct: 882  GSCKDHQKQLAKWQASASQTDWLLPEFDRYQARTYLDFIGPALARHRDLGDLAGVPAHAD 941

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-----------HYKR 756
            I    +R+  ++ +       D+L++R +   +    +      P               
Sbjct: 942  ISGHPARFAVQM-IHSYDLLDDDLEERMEEKSERLEAIRRGEPVPGSFAFDEKAREQLSW 1000

Query: 757  PKPFPPLEAQPRTYSFSEIKQLI--------NDPYAVYARRILKLDFIPHFKKDPDRTDR 808
              P   +       S SEIK+            P       IL        KK     ++
Sbjct: 1001 TYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKPADGSILYRRPAFMMKKGLTAAEK 1060

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            GT  H ++  +    +  +  E    + ++ +     E     ID        +I   F 
Sbjct: 1061 GTAMHTVMQHIPLSHV-PSIEEAEQTVHRLYEKELLTEEQKDAID------IEEIVQFFH 1113

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGFADRIDLLKSGFVDITD 917
                      +     IP  +A+               + + G  D +   + G + + D
Sbjct: 1114 TEIGGQLIGAKWKDREIPFSLALPAKEIYPDAHEADEPLLVQGIIDCLYETEDG-LYLLD 1172

Query: 918  YKT------------GDNPKKETAQKLIDPQLSLEAAALKAGS 948
            YK+            G  P  +      + Q+ L   A++  +
Sbjct: 1173 YKSDRIEGKFQHGFEGAAPILKKR---YETQIQLYTKAVEQIA 1212


>gi|86742478|ref|YP_482878.1| UvrD/REP helicase [Frankia sp. CcI3]
 gi|86569340|gb|ABD13149.1| UvrD/REP helicase [Frankia sp. CcI3]
          Length = 1130

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 96/980 (9%), Positives = 231/980 (23%), Gaps = 132/980 (13%)

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             V N  RL     L LI       +   +       +     +   L   L  +   +  
Sbjct: 158  VVDNALRLGLEPDLQLISGAARYQLAARVARSHGGKVEALTRSLGALVGELVALDAEMSE 217

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKI-------------------------ASKYWT 196
                  DL A                 +                              + 
Sbjct: 218  HLVDPADLVAFDGALLAEIDAALRRAEQRRGTRGVRRELRRCAAAARGRRELAALVAEYR 277

Query: 197  ERLVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
                E +            ++A    E     +     +++     +  A  R+++ +  
Sbjct: 278  AARRERDVLDFGDQVTCAARLAETMPEVGRAERARAAVVLLDEYQDTSVAQRRMLTGLFG 337

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
               G  V    D       W   +  + +   ++   +     ++ +L          ++
Sbjct: 338  --GGHPVTAVGDPCQAIYGWRGASVANLDHFPTHFPGADGTPAAVYELSVNQRSGGRLLR 395

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                V+ ++  R  V+     P           L     +                  E 
Sbjct: 396  LANTVAAQLRARHRVVELRPRPDVADQGEAVVALHVSWAD------------------EV 437

Query: 372  ISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
              IA  LR  +D        A++   R     +   +   G+ +++     L      + 
Sbjct: 438  AWIAGQLRRVVDAGTAPGDIAVLVRARGDIPALFTAMQAAGLPVEVVGLTGLLIVPEVAE 497

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
            + ++L  +       A+  L+  P  + G  +      ++A E   +       D+    
Sbjct: 498  IVAMLEVLDSPTANAALVRLLTGPRVRLGPRDLAAL-GRHAREAARVPDPVGDPDLPGRS 556

Query: 490  SLVLDRIAT----------QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
              + + +A              +   P   +      + LA  +          L+    
Sbjct: 557  DPLAEAVADVDPADVVALSDVLDDPGPQMSAPGRARVRRLAAEIAALRGHVGEGLLDLLH 616

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT----------LSSLFS 589
               +T G       T++ V   +   +     +   + + +G             +    
Sbjct: 617  RVVATIGLDVELTATEVAVRARRQENVAAFLDVAAGFTDPDGTNSLPAFLGFLRAAREHE 676

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            + ++      A+AI  + +         V      +S +F   T+  +      ++   L
Sbjct: 677  RGLDVAGPSGADAIALMTMHRSKGLEWEVVAVPNLTSKVFPDLTVRDQWTTSPGVLPIPL 736

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY---TRSLREN 706
                              + +            +    +      + L++          
Sbjct: 737  RGDADDLPAFTVCAEKAALDAFRADARQYAEREERRLAYVAVTRAKSLLFASGHWWGPTQ 796

Query: 707  NIPTIASRWLQRLLVLGG------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
              P  AS +L  L             +     +R    L    +  +          +  
Sbjct: 797  KTPRGASVFLDELAEHARTGGGLVDVWAPEPAERTNPALATPERFAWPIPYEPEPYARRL 856

Query: 761  PPLEAQPRTYSF---------SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
               E      +             +  ++ P  + A   + L  +    +     +R   
Sbjct: 857  AAAEGVMARLAALSVPGASAEPAGEPFVDGPAGMTAAERVLLAELDREARLLLAEERAAR 916

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--- 868
                   L           +    +             P         FH          
Sbjct: 917  LARTDVALPASLTASQIVRLRADPEAFARELVRPLPRRPVAAARRGTRFHAWVEEIFDYR 976

Query: 869  --------------------------EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                                              +     +  P ++ +      + G  
Sbjct: 977  ALIDTEDLPGAADAELTDDDLRSLQQAFLRTAYGARRPFAIEAPFELRLAGR--IVRGRI 1034

Query: 903  DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
            D +  L  G  ++ D+KTG +          D QL +   A        +D   V +  +
Sbjct: 1035 DAVYDLGGGRWEVVDWKTGRS-------DADDLQLGIYRLAWAR--LRGVDPSAV-DAAF 1084

Query: 963  IRLKQKFKIDCITNDKKKYS 982
            + ++    +   T  +++ +
Sbjct: 1085 LYVRTGAVVRPPTLSEEELA 1104


>gi|51245195|ref|YP_065079.1| exodeoxyribonuclease V, gamma chain [Desulfotalea psychrophila
           LSv54]
 gi|50876232|emb|CAG36072.1| related to exodeoxyribonuclease V, gamma chain [Desulfotalea
           psychrophila LSv54]
          Length = 1056

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 65/623 (10%), Positives = 158/623 (25%), Gaps = 42/623 (6%)

Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANA--IWLAKNLADIIDIIETEEKKWEDLHALK 173
           +      L DI +D+Y      +    A      LA  +A + D  +           L 
Sbjct: 91  VWRLEALLRDIDEDIYLPLKKYVSGEVAELKRYQLAGQIAQLFDQYQLMRPSMLARWRLG 150

Query: 174 N---EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT---- 226
               E+    W       +   + +              +Q  ++    E L K      
Sbjct: 151 QRVTEEDCEIWQ--MHLWQRLVEEFPA----------ARHQGEILENIIETLEKEECQRR 198

Query: 227 -KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
               I + G     P   + +  +++     + L          +        +     +
Sbjct: 199 LPRRIFVFGLHTMAPLFLKFLQALSSRTEVHLFLLSPCREYWGEVGRGGDRLLSLEGIRD 258

Query: 286 TTY------STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
           +           PQ  LA L        + +       +        +     P     +
Sbjct: 259 SGVDLSSYEEEEPQQLLASLGRQ-GRDFQQMLVASAGYSIDSALYQGLGAGSPPSLLHVL 317

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITAD 395
           +   +   ++         + ++   +   E   +   +   L        +   ++  D
Sbjct: 318 QGDILERGRLAVTAARDDSLRIVSCHSPLRELAVLKDHILDLLYKDASLQLRDIVVMAPD 377

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-- 453
                 +   L                 T+ +  L  L         +  +  L++    
Sbjct: 378 IQEYAPLIPALFADIQYSIADRATGQRNTVMAVFLDYLN-LFSGRFGWSEVLDLLRSEHI 436

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            ++F   E      +  +    +R   ++    +L    L+          +    +  +
Sbjct: 437 YSQFSLGEGDFDLLQKWVTESGIRWGLSAEQRQELGLPPLELNTWLAGLQRLLLGFAMSA 496

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +   E  +   D        L           G   +    +L     + +  D  R   
Sbjct: 497 DTMVEGVLAYSDIEGNSAQALGGLCEFLQVLQGGQELYTTPRLLHEWAELLQGDAERLFG 556

Query: 574 NLWF--EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS---STL 628
                  +E + + +   +  E    +  +      ++   +   + +           L
Sbjct: 557 GEENSAHQELQQILAGLGRGREYQGVLLYSQPIAFQVVMAWLQQASAQVGSSAGFLRGQL 616

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
                L  R + F  + L GLNEG +PK   +  F     + +L  ++  +   +     
Sbjct: 617 TFCSMLPMRSIPFRVICLLGLNEGKFPKQDKQATFDLLASKPELGDRSP-RIDDRYQFLE 675

Query: 689 EMANGTRHLIYTRSLRENNIPTI 711
            + +    L  +   R       
Sbjct: 676 ALISVRDSLYLSYVGRSIKNNGE 698


>gi|228906866|ref|ZP_04070735.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL
            200]
 gi|228852870|gb|EEM97655.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL
            200]
          Length = 1166

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 95/923 (10%), Positives = 202/923 (21%), Gaps = 190/923 (20%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GATYPEGEDVAAELLCIEQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      +    RA                             
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEDLATLRAH---------------------------- 594

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
               K         S L     E    L + +                     S+SD    
Sbjct: 595  --GKKGLFYEVMSSFLKGAPLEEEQELHEKLEWFY----NLLQGWREFARQQSLSDLIWK 648

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                                                 +   +         I+ R  D  
Sbjct: 649  VYGETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMG 708

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV-----------WPKNTAKNPFLS 665
            T +   E+   + I+   +S+ L F  + + GL                      + F+ 
Sbjct: 709  TARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFID 768

Query: 666  RVMQSDLNLKT---------AEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIA--- 712
               +      +          E    +    +      +  LI   ++++ N        
Sbjct: 769  PRKRIKYTTLSQLAIKRKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLD 828

Query: 713  ----SRWLQRLLVLGGTDFFDNLKKR---------------------------------- 734
                S WL    +  G   + +                                      
Sbjct: 829  AREHSEWLLPDHIRAGASCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEV 888

Query: 735  --GQCYLDWTRKLDYTTKQPHYKRPK-PFPPLEAQPRTYSFSEIKQLINDPYAVY----- 786
              G   L      +   +     R K   P    +        + +   +    Y     
Sbjct: 889  VDGNTLLAPEPVQEEKQELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATFYRAKQS 948

Query: 787  ---------------------ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
                                  R  +K       KK     +RGT  H ++  +     +
Sbjct: 949  VTEIKRNYQSEEGSDNAFIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHV-----D 1003

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
               P    ++++ I     KE L    +        K+   F     K   + + +   +
Sbjct: 1004 LKKPITVEVLQEQIAGMVNKELL--TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREV 1061

Query: 886  PAKMAIESIG------------IHLTGFADRIDLLKSGFVDITDYKT----GDNPKKETA 929
            P  M + +              I + G  D +   + G + + D+KT    G  P     
Sbjct: 1062 PFTMMLAAEEAYQDWQGKSEETILVQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQ 1120

Query: 930  QKL-----IDPQLSLEAAALKAG 947
             K         QLSL A AL+  
Sbjct: 1121 AKPILEDRYKVQLSLYAKALEKS 1143


>gi|54026511|ref|YP_120753.1| putative DNA helicase [Nocardia farcinica IFM 10152]
 gi|54018019|dbj|BAD59389.1| putative DNA helicase [Nocardia farcinica IFM 10152]
          Length = 1184

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 101/894 (11%), Positives = 219/894 (24%), Gaps = 82/894 (9%)

Query: 3   NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLAS-VTIYVPTKRAIQELR 61
           +++  V    P          A    T+     +   N L+L   V     T++A Q+L 
Sbjct: 19  DEQAAVIAAPPGPTLVVAGAGAGKTETMAARVVWMVANRLVLPEQVLGLTFTRKAAQQLT 78

Query: 62  SEFIEITGK--KSTILPIIKSLGDVVEEKFTADL------------LLSYNLNPPVSNIQ 107
           +       +   S +L  + S G++  +   A+             L  + L  PV    
Sbjct: 79  ARIRTRLARLAGSALLRELDSGGELRAQLAGAEPEISTYHSYAGRLLSEHGLLLPVEPSA 138

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
            LL   +L  +    + +   DL  E            + L+  LA+ +   E   +   
Sbjct: 139 TLLTETQLWQLAHQVVRNWDGDLDTERTPVSVTEA--VLALSGQLAEHLVEPEELAEAHA 196

Query: 168 DLHALKNEKYGMWWLL-----AADFLKIAS----------KYWTERLVELNASSPVGYQI 212
           +L  L N              A   +              +   + L    A        
Sbjct: 197 ELEKLINTLPAGPRQRGGPSKALRDIVRVQHERVALLPLVRALNDALRRRGALDFGAQMS 256

Query: 213 ALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI---------- 257
              R  AEH       +G    +++     +  A   L+S +     G            
Sbjct: 257 LAARLAAEHPEVAEAERGRFRLVLLDEYQDTGHAQRVLLSALFGGAAGDPEGTAGGRAPR 316

Query: 258 --VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             V    D       W   +  +    +++   +      +  LL               
Sbjct: 317 PAVTAVGDPMQSIYGWRGASAANLPRFATDFPCAPGAPAPILPLLTSWRNPP-------E 369

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                   +  + ++      + +          P +        +++      E I+  
Sbjct: 370 ALALANLVAEPLRQAAREAGGATVDALRAKPGAEPGVVALALTETVVDERGWVAERIAAE 429

Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
            A R +  E    SA++      A  +   L   G+ ++I     L  T   + + + L 
Sbjct: 430 WAARRAAGEPPPTSAVLVRRNADAAPLAEALREQGLPVEIVGLGGLLATPEVADIVATLR 489

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            I +     A   ++     + G  +      +     V         +I D  +L  + 
Sbjct: 490 LIAEPAAGSAALRVLTGARWRIGVADLAALSRRARELSVVRTDTAVGAEITDGAAL--EA 547

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
              +     V       +  D   A        Q I  L           G   +++   
Sbjct: 548 ALREVTPEPVEQAGLADAIADPGPAENYSAAGYQRIEALGRELAALRERSG-QPLTELVA 606

Query: 556 LTVTCLQNV--CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                +            L      E     + + +             + ++     + 
Sbjct: 607 DVERTIGVGVETQARRAVLGAGAGREHLDAFAEVVAGYAADPGASLGGLLAFLTAAESVE 666

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR------- 666
           +G            + +L    ++ L ++ + +  +   V+P  TA   +L         
Sbjct: 667 NGLEPGEVEVAKDRVQVLTVHAAKGLEWEIVAVPHVVRRVFPSGTAGGTWLGALAELPTA 726

Query: 667 ------VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
                    +   +   +        D E A            R +    +    L R  
Sbjct: 727 LRGDRVAEDAAEGVPVLDLTDLYDRADLERALAAHKAAL-ERRRIDEERRLFYVALTRTE 785

Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
            +         +               +  +           +           +    +
Sbjct: 786 RVLLVSAHHWAETGDPKGPSDFLLELKSAAETPGGPAHGAVEIARWDDPPPVDAVNPFAD 845

Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
           +P                     D  ++G          ++       P + H 
Sbjct: 846 NPATAE-------WPRDPLGPRRDPVEQGAALVRAALAELRAPAGPRAPAVPHA 892



 Score = 71.5 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 54/518 (10%), Positives = 126/518 (24%), Gaps = 36/518 (6%)

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
            +    L+  ++      +                 EL   L    +           +  
Sbjct: 687  HAAKGLEWEIVAVPHVVRRVFPSGTAGGTWLGALAELPTALRGDRVAEDAAEGVPVLDLT 746

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                   +          L+   +DE R+L  +      + L        ET    K  +
Sbjct: 747  DLYDRADLERALAAHKAALERRRIDEERRLFYVALTRTERVLLVSAHHWAET-GDPKGPS 805

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
               +++ +             + +       +++     D                    
Sbjct: 806  DFLLELKSAAETPGGPAHGAVEIARWDDPPPVDAVNPFADNPATAEWPRDPLGPRRDPVE 865

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-----GTRHLIYTRSLRENNIPTIASRWLQ 717
              + ++++ L    A       A     A           +   +  +  +P+  +  + 
Sbjct: 866  QGAALVRAALAELRAPAGPRAPAVPHAPAVPRPAPRHTPTVPPPTDTDGPLPSAPNDDVP 925

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            +           ++         W   +D    +               P     + + +
Sbjct: 926  QPQSPCLDPVVTDVPTDPDDPEGWAADVDALLAEHEATVRAAR--EVELPGQLPATALVE 983

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L  DP    A+   +L     +  +P    RGT FH  +             E       
Sbjct: 984  LRADP----AKLARRLRRPLPYPPNPLAR-RGTAFHAWVQRWFSGTRLLGFDE------- 1031

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
                       P   +        ++  +FL      +S    I V +P + +I      
Sbjct: 1032 -----LPGAGEPDPGEAAADAELARMQDAFLNSAWAHRS---PIDVEVPFETSIAGT--V 1081

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE-----AAALKAGSFSQI 952
            + G  D +     G   + D+KTG  P     +  +  QL++                + 
Sbjct: 1082 IRGRMDAVFAEPDGRWVVVDWKTGAEPDPGD-EPAVAMQLAIYRLAWARLMAARTGGDEQ 1140

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
                  +  +  ++    I           A+ +   +
Sbjct: 1141 AMLHRVDAAFHYVRSGRTIAPADLPGPDELAELIRAAA 1178


>gi|34499532|ref|NP_903747.1| exodeoxyribonuclease V subunit gamma [Chromobacterium violaceum
           ATCC 12472]
 gi|34105382|gb|AAQ61737.1| exodeoxyribonuclease V, gamma subunit [Chromobacterium violaceum
           ATCC 12472]
          Length = 1065

 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 96/901 (10%), Positives = 205/901 (22%), Gaps = 71/901 (7%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              A+ T+ V ++   + +  +     G  +          ++      A          
Sbjct: 28  DPFAAETVIVQSRGMGRWITLDVARKAGIAA----------NIDFALPAAFAWRLMQKVM 77

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
           P    +       L       LP +  + +      L    A A  LA  +ADI D    
Sbjct: 78  PDLPRKSAFVPEVLAWRLLALLPSLSGEPFGPVLHYLEGGEAAAFELAGKIADIFDQYLV 137

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-EAE 220
               W                     L      W           P  +++ ++    A+
Sbjct: 138 FRPDWIRAWEAGELLGLGEDEAWQASL------WRRLAES----DPGRHRVRMLDQFFAD 187

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     + + G     P    L+  ++   +  +            I +        
Sbjct: 188 LKPEHLPPRVTLFGIASLAPMYLALVKRLSQLTDVCLFTLNPCEAYWGDIVDARRLLKLR 247

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     HP   L   L        ++       +     +       L     D+ 
Sbjct: 248 QAGDLFATQGHP---LLSSLGKQGRDFFELIAEDAELDAKPLFAAPKGDGLLARLQRDIL 304

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADR 396
             +             + + +        E  ++   L      + K      A++T D 
Sbjct: 305 QLNDPSQLPRPFDPADASIEVHACHGPMRELEALKDRLLAMFAADPKLSPADVAVLTPDI 364

Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           N        +         I   I+           S   ++L           +  L  
Sbjct: 365 NAYAPYIDAVFGRRDDAPNIPYSIADRRVEREQPLLSTFAAVLKLADSRFAADEVLALFD 424

Query: 452 HPLAKFGFPEKYL-----SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            P     F                  +   R   +   +                     
Sbjct: 425 CPALLARFDLADADLAFIQDWVRDAGIRWGRDAAHKASLGLPAEAAYTWRWGLDRLLLGT 484

Query: 507 HWQSRLSEEDKELAV----------LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                L+ +D  L             L + + +            ++     +   W + 
Sbjct: 485 VLPPALAGDDAGLFAGLLPYTAAQGQLGETLARFAGFYDALDALADAWSQPAAPQQWAQR 544

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                  + L E      L      + L+ L       G           D + R +   
Sbjct: 545 FHQACDRLFLAEGDDEAALELLR--EALAELAENADLAGFGQPVGLAVARDWLLRKLSSS 602

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
           +   +   S  +     +  R + F  L L G+N+G +P++     F           ++
Sbjct: 603 SA--QGFLSGGVTFCAMVPMRSIPFQALCLIGMNDGAYPRDERPVSFDLVARNPRRGDRS 660

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLREN--NIPTIASRWLQRLLVLGGTDFFDNLKKR 734
             ++  +      + +    L  +   +      P   S  +  LL        +++  R
Sbjct: 661 R-RFDDRYLFLEAILSARGRLYLSYVGQSARSGEPLPPSPLVSELLDTLSAMCGEDMAAR 719

Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                   +            R   F P  A       +E    +       A  ++ L 
Sbjct: 720 -LTLRHPLQPFSPKAFDGGDARLASFEPAFAAALAAPPAEPAPFVAPLPDEGAATVVNLH 778

Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
               F ++P R          +      +  +    +       +     +  L      
Sbjct: 779 DFIRFWQNPARAWLADRLALRVAYSGDAQPAREPFAMARDASHALRRQLVEAMLHGKPPQ 838

Query: 855 IWRHLFHK--------ISHSFLEHE-------EKIQSSIEKIFVNIPAKMAIESIGIHLT 899
             R             +  ++L+ E               +     P  + +E  G  L 
Sbjct: 839 PVRQRVAAAGLLPCGELGQAWLQEEGRASVRLAGRLPGALRGEALPPQPVHLEIAGFTLV 898

Query: 900 G 900
           G
Sbjct: 899 G 899


>gi|326383310|ref|ZP_08204998.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198060|gb|EGD55246.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
          Length = 1117

 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 85/752 (11%), Positives = 188/752 (25%), Gaps = 71/752 (9%)

Query: 46  SVTIYVPTKRAIQELRSEFIEIT---GKKSTILPIIKSLGDVVEEKFTAD---------- 92
            +     T++A  EL +              +L      G++     +AD          
Sbjct: 67  EILGLTFTRKAASELAARIRRRLSMLAGSPALL-EWDPGGELASRLRSADAEVSTYHAYA 125

Query: 93  --LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             L+  Y L  PV     LL    L  +  + +     +L   +           + L  
Sbjct: 126 GRLIADYGLLLPVEPTATLLSETELWQLAFSVVASWPGELK--TAKVPASVTEAVLRLYS 183

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA---------------ADFLKIASKYW 195
            +A+ +  ++       DL+ + +         A                  L       
Sbjct: 184 EMAEHLVGVDELSAAGADLYRMIDTLPKGPGQRAEPSQKLRAYQAVMDERRELIPLVVAL 243

Query: 196 TERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVA 250
            E +    A           R  AEH       +     +++     +  +   L+S++ 
Sbjct: 244 REAMSAQGALDFGSQMSLAARLVAEHPEVVDAERAGIKAVLLDEYQDTGHSQRILLSSLF 303

Query: 251 NHP-----NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
                       V    D       W   +  +    + +            +LL     
Sbjct: 304 GGHAIGGRRAIAVTAVGDPIQSIYGWRGASAANLPRFARDFPRPDSRDAHRRELLTSWRN 363

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
            R  +      S E+  R + +S                     P        V L   +
Sbjct: 364 CRGALYLANQTSEELRRRGVPVSVLR------------------PRPDAPDGTVRLALTE 405

Query: 366 NEREEAISIAIALRMSLDENKKK------SALITADRNLARRVKLELTRFGINIDISAGI 419
              +E   IA  +       ++       +A++      +  +  EL R G+  ++    
Sbjct: 406 TVIDEREWIADCIEDYYATAQRDGVAPPTTAILVRRNEDSAPLAAELERRGVPAEVVGIG 465

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            L      + + + L  +       A   L+    A++      L+        +A    
Sbjct: 466 GLLHVPEITDIVATLRLMADPMAGTAAMRLLTG--ARWQLGAADLAALWRRARELAAGAG 523

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
             +   +  +  + D +        V       +  D            + I        
Sbjct: 524 APTTGAVTSREALDDALDAALPGEAVDSAGLCDALADPGDQSRYSAAGFERIVTFGRQLD 583

Query: 540 NKNSTCG--NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                 G     +    + T+       +   R    +   E     +   +   +    
Sbjct: 584 GLRRRLGQPLPELVADVEQTIGVAVEAQIRARRMRGEVTGREHLDAFADYVTHYADRSGA 643

Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                + ++D    +  G            + IL    ++ L +D + L  + + ++P  
Sbjct: 644 TLPGLLAFLDAAEVVEKGLEAGQVEVAQQRVQILTVHAAKGLEWDVVALPHVADRIFPSG 703

Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            A+  +L    +    L+      G                   +  +++   I  R L+
Sbjct: 704 KAETTWLGSPRELPAELRGDLSRDGDEGFPPLDLTEVADRKELEAAIDDHKEAIGQRRLE 763

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
               L         +        W+   D   
Sbjct: 764 EDRRLLYVALTRAKQTLLVSAHHWSETGDRPR 795



 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 85/296 (28%), Gaps = 31/296 (10%)

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
            R +     +               L+     +         +      R+     +    
Sbjct: 845  RQISIGWPVDLLGERRAPMVAAAELVDSMRAERALFAVADDEPADADAREWRREVQVLLD 904

Query: 755  KRPKPFPPLEAQPRT--YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
            +R +   P+         S S++ +L +D  A  AR        P   +      RGT F
Sbjct: 905  ERAQAVDPMVDVELPGHLSVSQLVELDSDQEAFAARLR-----RPVPYRPNPMARRGTAF 959

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H  +          +  E+      +  +  +   L              +   FL    
Sbjct: 960  HAWVERRFGATRLLDVDELPGAADAVAGAVEDDLTL--------------LRAKFLASPW 1005

Query: 873  KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
              +       V +  +  I S    + G  D +     G + + D+KTG  P+    +  
Sbjct: 1006 ADR---TPQEVEVGFETVIGST--VVRGRMDAVFADGEGAL-VVDWKTGAVPEPA-RRAP 1058

Query: 933  IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
            +  QL+    A      S +   KV    ++ ++  + ++          A  L++
Sbjct: 1059 LFIQLAAYRIAWSQ--LSGVPLEKV-RAAFVYVRHDYTLEPADLPGPDELAQILAD 1111


>gi|15602826|ref|NP_245898.1| RecC [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721285|gb|AAK03045.1| RecC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1124

 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 112/957 (11%), Positives = 238/957 (24%), Gaps = 130/957 (13%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            I V +    Q L+ +  E  G  S I   +P        + ++   D L +       +
Sbjct: 33  VILVQSPGMAQWLQWKIAEQQGISSNIKFPMP-----ASFIWQQ-YVDNLPNTEEQSQFN 86

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                  L RLI     ++    + L      S          LA  +AD+ D       
Sbjct: 87  KASMTWRLMRLIPEHLEQV--EFQSLRHYLSSSHQTEQQKLYQLAYQIADLFDQYLVYR- 143

Query: 165 KWEDLHALKNEKYGMWWLLAADFL------------------KIASKYWTE-RLVELNAS 205
             E +   +              L                   I  +      L E   +
Sbjct: 144 -PEWIACWERGDEATMMAQLERKLKDTRLPIGNAFSQDVKWQAILWRALVADILAESGQT 202

Query: 206 SPVGYQIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
            P+       +       +        + I G +        +   ++ +    +     
Sbjct: 203 VPLHRAYLQTQFLQFLQTQHPVNLPPRLFIFGISALPKGYLEIFYAMSQYCEVHLFFTNG 262

Query: 263 DCHIPTAIWN-------------------TITEKSTNITSSNTTYSTH-PQYSLAKLLDF 302
                  + +                    I        +   +   H   +    LL  
Sbjct: 263 CREYWGDLIDPRFMQRLSQMQRTGYHTALPIPVFHHTDNARFESSYDHEHLFEGHPLLSS 322

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD----TSDMRNTDILENKIPNIQKCFSD 358
                 D   L     ++ G   + + + L           R   +   +  N+ +    
Sbjct: 323 WGKLGRDFLYLLTELEQLEGVRSIDAYTELTSQHLLSQVQARILHLEGKQGLNLAENDRS 382

Query: 359 VALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLE-------LT 407
           +      +   E   +   L     ++     K   ++ AD +               + 
Sbjct: 383 LTFHSCHSPMREVEVLHDYLLHLFQQDSTLTPKDIVVMVADIDKYTPYIQAVFGQYNQVA 442

Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
           +  I   IS        +  +    LL           I  L+  P  +  F +  L   
Sbjct: 443 QRQIPFSISDNRLSENDVLIASFIHLLALKESQFSAEDILALLDIPAIRNRF-QIELMEL 501

Query: 468 KNALELVALRGNKNSYDIMDLKS------LVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
           +     VA  G +   +    K                                  +   
Sbjct: 502 EQIRHWVAHAGIRFGVEKEQGKQEKNTNSWQAGLERMLLGYAMREENGIWQGNLGFDPCY 561

Query: 522 LLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
            L   +   +                   I  W +  +T L +   ++   +  L + + 
Sbjct: 562 GLQGQLAGRLAEFIARLSAWYQFLQTPQPIEKWQQHLLTLLTDFFAEDETNITTLRYIQ- 620

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
            +T+  + + I +T      ++    D+++ L++ +    K      +     L  R + 
Sbjct: 621 -ETIVQMVTDIQQTHFDQPLSSEVVSDVLSALLEDDPNSMKFLAG-KVNFCTLLPMRSIP 678

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IY 699
           F  + L G+NEG +P+    N F   +MQ D       +         E     +     
Sbjct: 679 FKVVCLLGMNEGDYPRQQTPNSF--DLMQYDRRKADRFRRDDDCYLFLEALLSAQEAFYV 736

Query: 700 TRSLR------ENNIPTIASRWLQRLLVLGGTDFFDNLKKR------------------- 734
           +   R            + S+ +  L+    +    + + R                   
Sbjct: 737 SFVGRSIVDNQSKPPSVLVSQLIDYLVDKLSSAETQDWQARLIEQHPMTAFSPDNFRGEN 796

Query: 735 ---GQCYLDWTRK--LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                 +L        +         +      + A+ R    +++   I  P A + +R
Sbjct: 797 GSFANQWLPLANIQKQERADFVQPIAQT-----VLAEDREIVLADLIAFIQHPVAFFFKR 851

Query: 790 ILK---LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            L           +   + T  G + + I  +L+     K+   +  L  + +    E  
Sbjct: 852 HLGVSFAKQEERIEDSENFTLDGLMRYQINEQLLYCDEEKSAEVLAQLKVKGMLPRGEFA 911

Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
            +                  +L+ E           V +   +      I L G  D
Sbjct: 912 QIFALQQQEDIAALKTTVADYLKQEA--------HVVEVDLTIPSGYGDIRLIGLLD 960


>gi|148239843|ref|YP_001225230.1| exodeoxyribonuclease V gamma chain [Synechococcus sp. WH 7803]
 gi|147848382|emb|CAK23933.1| Exodeoxyribonuclease V gamma chain [Synechococcus sp. WH 7803]
          Length = 1105

 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 86/870 (9%), Positives = 211/870 (24%), Gaps = 52/870 (5%)

Query: 40  NPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNL 99
            P     V + V T    + L        G  + +       G  + +   A L     L
Sbjct: 25  PPGPFEQVEVVVNTWPTSRWLGERLASFNGISALV--RFPFPGSRLRQLAQAVLSKEPPL 82

Query: 100 NPPVSNIQRLLELARLILIWRN-KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
             P    + +  +  ++      +    ++  +     +          LA+ LAD +D 
Sbjct: 83  EDPWRAERLVWTVIAVLPQLMQCEEAKPLRQWWNNQRTTSDALTREQWLLARQLADAVDD 142

Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
                   +DL        G        +  +  +   ERL        V   +  +R+ 
Sbjct: 143 YALYR--PQDLAGWLAGDDGDHLPAVLRWQPLLVRALAERLPCEPFGLQVQQAVDQLRS- 199

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
            +         + + G +   P    L+  +A      + L      +            
Sbjct: 200 GQAPATPLPKRLRLFGLSNLAPVQIDLLQALAAVMQVELYLLTPCPDLWERSAQRRRRLG 259

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
            N T+S           L  +L  +  + + +                +    +    S+
Sbjct: 260 ENWTASPDGTWLIEAPKLEAILGRMGGEFQLLLEGSGDCLLSSTDQADLFADPVAMAASE 319

Query: 339 MRNTDILENKIPNIQ----------KCFSDVALIEADNEREEAISIAIALRMSLDE---- 384
            R   +LE     +                +  +       E   +   +   + +    
Sbjct: 320 GRQGSLLEQLQRQLASSEHFPLQHTSADRSLLFMGCAGPWREVQLVRDQILHWMADDSTL 379

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL------HSSILTSLLNAIF 438
             +   ++T D      +   +        +     L+               +LL    
Sbjct: 380 QPRDILVMTPDVERYAPLLASVLSDQDATGVDLPWRLTDRSQQNSPGLQQAFMTLLQLSA 439

Query: 439 KLNDFMAIATLVKHP-------LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
           +      +  L+ +P       L      +   +  ++       R  ++  D   L+  
Sbjct: 440 ERLTATGLEALMSNPAFLDLQGLEAQEAMDITAALQRSGFRWGLDREERHGDDTHSLRWC 499

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
           +   +                +    +L++  ++     +  +  +      +      +
Sbjct: 500 LDRWLIGLILPDEPGLALGSCAPAVADLSLQQLERWWPLLDQIAQWIAQLRQSGSC---T 556

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            W +     L ++  D       L   ++G     + +   E             + ++ 
Sbjct: 557 VWVERLRRLLSDLFGDGGAWDWELQAIQQGLETWLIQAGHCELNLETTVVIAVLEEALSA 616

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
                       +S  + +      R +    ++L GL+   +P+   +  F     Q  
Sbjct: 617 -----DSGRFGHRSGAMTVSALEPMRAIPHRVIVLMGLDAASFPRTRERPGFHLLERQRR 671

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI--ASRWLQRLLVLGGTDFFD 729
           L   ++            + +  +HL+ + S R+            +Q+ L L   +  +
Sbjct: 672 LGDPSSTDQDRYV-LLEALLSSRQHLLISWSSRDERRGDALPPCPPVQQWLNLLRQELSE 730

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
               +          LD     P             Q R             P       
Sbjct: 731 EAMAQVL-IEPPANPLDAANFIPAKTHALSCDRRLLQARQC---LDDPQGRAPGHAPLGL 786

Query: 790 ILKLDFIPHFKKDPDRT-DRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEK 845
            L + + P     P       +     +   ++        E           ++     
Sbjct: 787 ALPIHWPPEAPPPPAHATTLNSDQVEQLERWLQAPQRAWLRERGIEAGEWCDAVEDRAPL 846

Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
                 +  +              H E   
Sbjct: 847 ALPERTLRALITERLRDELDRLKTHPEARW 876


>gi|113460414|ref|YP_718476.1| DNA helicase/exodeoxyribonuclease V subunit gamma [Haemophilus
           somnus 129PT]
 gi|112822457|gb|ABI24546.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Haemophilus
           somnus 129PT]
          Length = 1144

 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 87/763 (11%), Positives = 194/763 (25%), Gaps = 80/763 (10%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q ++ +  E  G  + +      +      +   D L     +   S   
Sbjct: 34  VILVQSGGMAQWIQWQIAEKKGISANLS---FPMPASFIWQLYVDNLPQVTASSQFSKEN 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE---- 163
               L  +I  + +        L      S   S      LA  +A++ D          
Sbjct: 91  MTWRLMEIIPHYID--QPEFYILRQYLQQSYQSSQQRYYQLASKIAELFDQYLVYRPEWI 148

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKI-----ASKY--WTERL-----------VELNAS 205
             WE    ++  +   ++     F+         ++  W   L            + N  
Sbjct: 149 ISWEQNKGVEIIQQIQYYQKNL-FVSESCFSQVEQHIVWQGILWRALVCSVPKETQKNVL 207

Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                 +  ++  A    K     I + G +         +S ++ H +  +        
Sbjct: 208 HRAHLHLLFLKHIAGEKPKNLPTRIFVFGISALPKVHLDTLSALSQHCDVHLFFNNACRE 267

Query: 266 IPTAI-----WNTITEKSTNITSSNTTYST----------H--------------PQYSL 296
               I     W  +  +                       H               Q   
Sbjct: 268 YWGDIIDQSHWQRLKVRERISWQDFQQPQNTQAWLSDEQIHTFEQNVFEQIYDEKLQVGN 327

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD-ILENKIPNIQKC 355
             L  +  + R+ +  L  +        + +S+  L      +       ++K  N+ + 
Sbjct: 328 PLLSSWGKLGRDYLYLLTELEANEINAYVELSEKTLLSQVQALILDLVPSKHKFLNLAEN 387

Query: 356 FSDVALIEADNEREEAISIAIALR----MSLDENKKKSALITADRNLARRVKLEL---TR 408
              +      +   E  ++   L      + D   K   ++ AD +        +     
Sbjct: 388 DRSLTFHSCYSPIREVQALQDYLLHLFNQAQDLTPKDVVVMVADIDKYAPYIQAVFSQGE 447

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSR 466
             I   I+           S    LLN    L     + T + HP+ +  F    + L++
Sbjct: 448 HYIPYSIADSKLSENDPLVSAFLQLLNLKESLFSAEEVLTFLDHPVIRQSFNITLEDLAQ 507

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT----HVPHWQSRLSEEDKELAVL 522
            ++ +E   +R     Y    L++    +   ++          H     +    +   L
Sbjct: 508 IRHWVEHSGIRFGLEKYPQQSLQNYNAWQAGLERMLLGFAMREEHGLWLDTLGFDDTYGL 567

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
               +      +            +  I  W +  +  + +             ++    
Sbjct: 568 KGQLVGYLKDFITRLYQWHQFLQADHVIEKWEEHLIELVSSFF-VVDGMDIPQQYKTTFN 626

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE---KSSTLFILGTLESRLL 639
            L     ++ E             ++I  +                  +     L  R +
Sbjct: 627 YLIDTIQQLTELILDSSFQQEISAEVIYEVFVERLKDIPNSLKFLMGKVTFCTLLPMRSI 686

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-I 698
            F  + L G+N+G +P+    N F           +             E     +    
Sbjct: 687 PFKVVCLLGMNDGDYPRQQTPNSFDLMQYHRKKGDRFRRDDDRY--LFLEALISAQQYFY 744

Query: 699 YTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
            +   R   ++     S  + +LL     +       +GQ  L
Sbjct: 745 VSYIGRSIIDDSEREPSVLVTQLLDYIAENINAQGDLKGQDIL 787


>gi|194336514|ref|YP_002018308.1| exodeoxyribonuclease V, gamma subunit [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308991|gb|ACF43691.1| exodeoxyribonuclease V, gamma subunit [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1068

 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 102/945 (10%), Positives = 239/945 (25%), Gaps = 103/945 (10%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L  TL    R    +P       I V ++   + L  E     G  +          + 
Sbjct: 13  VLVDTLAAALREPLASPFK--QEVIVVQSRGMQRWLSMELASRFGVWANGH---YPFPNA 67

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
           + ++    L          +       + RL+     +L D          L+       
Sbjct: 68  MVKELFGALFSEKPDTSSFAPEVMSWRIMRLLP----ELLDTEPFGTLRRYLADDPDGLK 123

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
              L++ +AD  D              L   +    W       + A + W   L    A
Sbjct: 124 LFQLSEKIADTFDQYT-----------LFRPEMLSHWEAGES--QPAGEEWQPVLWRKLA 170

Query: 205 SSPVGYQIALMRAEAEHLMKGT------KGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                ++  +       L   +         I + G +        ++S VA      ++
Sbjct: 171 DGEGMHRGRMKELFCRQLSPLSPEVKEIPERITLFGISYLPKFHLDMLSAVARVTEVNLI 230

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP----QYSLAKLLDFLDIKREDVKRLG 314
           L          I                    +P       + +    + I   D     
Sbjct: 231 LLSPTREYWGDILARKAIVRLPEEERALRMEGNPLLASLGRIGRDFSDMIIDMSDSAFHQ 290

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
               +  G   ++               +  +  +  + +    + +    +   E   +
Sbjct: 291 EERYDDPGEECLLHGLQSDILNLSGTGEEGEQRPLDPLDR---SLRIHSCHSPLREIEVL 347

Query: 375 AIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTL 425
              +   L+E+     +   ++T D          +        G++  I+    +    
Sbjct: 348 YDNILAMLEESPGLTLRDIVVMTPDIESYSPYISTVFGAGGNGAGLHYSIADRRMMHEGE 407

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYD 484
            +S +  LL           +  L+  P   +    E                       
Sbjct: 408 IASAVLKLLALPASRLAASELFDLLASPPVSRRFLVESDELDVIREWIEKTGIRWGMDEG 467

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEED---------KELAVLLVDHILQCITPLV 535
               K+L   R  + K           + +E+          +LA    + + +    + 
Sbjct: 468 DRTAKALPSYRENSWKAGLDRLLLGYAMPDENQLFNGILPYDDLAGSAAETLGKFAGFIT 527

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE-T 594
           + +   N      ++ +W       L +  L                      +   E T
Sbjct: 528 SVEAFVNRMERPCTLEEWRSRFQALLADFILPSSVSEREFATIAALGEKLGEVAAAAEFT 587

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                A  + W+     L +             +     L  R + F  ++L G+N+  +
Sbjct: 588 QEVTPAVMLSWLRAHLELQEQGLGFMTG----GITFCAMLPMRSIPFRVVVLIGMNDSAF 643

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIA 712
           P+ +    F     +     ++  +   +      + +    L  +   +   +N     
Sbjct: 644 PRQSRAPGFDLIAREPQKGDRSL-RNEDRYLFLESILSARDLLYISYIGQSIRDNSELPP 702

Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL--------------------------- 745
           S  +  LL      F        +  L     L                           
Sbjct: 703 SVLVSELLDAVRRGFSLPDGDSVEKQLVVRHPLQAFNRAYYSAGSPLFSYSAENFHALVE 762

Query: 746 -DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD---FIPHFKK 801
            +            P      + +T S  ++ +  ++P   +  + L +     +   + 
Sbjct: 763 KERPAAPSRPFMSVPLDEPPEEWKTVSLKQLLRFYDNPAGFFLEQRLGIRLEGMVEPLED 822

Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLF 860
                  G   +++  EL++  +          +  +  S   +  LPP +   +     
Sbjct: 823 REPFAVEGLALYSLKQELLEIVLGGGNTL---ELLPLYRS---RGVLPPALHGELLFRKI 876

Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
                 F    ++  +    +    P ++ ++  G  LTG   R+
Sbjct: 877 LDEVQQFAATVQEKTAGAGALA---PLEVDLQLGGFRLTGQLVRV 918


>gi|58039096|ref|YP_191060.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H]
 gi|58001510|gb|AAW60404.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H]
          Length = 1191

 Score =  101 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 77/792 (9%), Positives = 182/792 (22%), Gaps = 54/792 (6%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                + L+     W    ++      +        +  +  + G       AG       
Sbjct: 393  QETRNLLRDPGAAWVLYKLDGG-IDHLLLDEVQDNSGLQWEIAGALTSEFFAGEGAWDMG 451

Query: 242  TARL-MSTVANHPNGAIVLPGLDCHIPTAIWNT-ITEKSTNITSSNTTYSTHPQYSLAKL 299
                 +  V ++        G          +   +                   S+  +
Sbjct: 452  PRPRTIFAVGDYKQSIYGFQGAQPEEFHRWRHEFASRVRNAGLLWRDPELNVSFRSVPPV 511

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            L F+D           +  +          +             +   +  +  +  +  
Sbjct: 512  LSFVDAVFSQPLAAHGLLQDDEKTLRPHVSARPGQGGRVELWPLVPVVQGEDDDEGLTPW 571

Query: 360  ALIEADN-----EREEAISIAIALRM----------SLDENKKKSALITADRNLARRVKL 404
                A+       +  A ++A  +            +         L+       R +  
Sbjct: 572  RAPSANTGQRSAPQRLAEALAEWIDQQIGRPPLPGQAPLTAGDVLILVPRRSPFLRSLIR 631

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L    + +     + L+  +    L +L  A+    D + +A+++  PL          
Sbjct: 632  ALKSRNVPVATLVRVGLTQQVAVRDLMTLCAALLLPQDDLTLASVLTSPLGGLTDDSLMA 691

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
               +N          +  + ++  +    +            + +   +   + LA  L 
Sbjct: 692  LATRNGTTHALGPKGQPLWTVLRERHREREDWRAAWEMLSTLYVRVDYASPYRLLAETLG 751

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
             H  +                  L+ +   +          L            E    L
Sbjct: 752  QHGGRTRLLRRLGPEAAEPVDELLTAALRYEGLHPPSLQGFLHWLEASEITSKREAESEL 811

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             ++    +     ++A  +   D  ++   G     +   +  L +    +    +  T 
Sbjct: 812  GAVRVMTVHGSKGLQARLVVMPDTTSKPPPGSDFLWEEAGALELPLWVPKKDMGTDVTTA 871

Query: 645  --------ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
                         N  ++   T  + +L               +  Q    F      R 
Sbjct: 872  LSERDAEKARAESNRLLYVALTRASDWLVICGAGAKREPADTSWYRQCEAGFRQLANAR- 930

Query: 697  LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
                      ++     R +           F +      C             +P    
Sbjct: 931  ------SEPMDLGWEGERLVLEEARTLAPVAFQSGSAEPPCATLPDWMGRAPDWKPVITP 984

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
             +        P     +E  +L        AR  L+L              RGT+ H ++
Sbjct: 985  HEDAMTRPLAPSRPDGAEFGELPA------ARSPLELLAGRPTPVREQAMRRGTMIHRLL 1038

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
              L +    +        + +              +         +     L H +    
Sbjct: 1039 QLLPETLPAEREAVALRWLSRRA----------LGLTEPEIKRLAEQVLGVLSHPDLAPL 1088

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID-- 934
                     P         +   G  DR+  +  G + + DYKT  NP     +  +   
Sbjct: 1089 FALGSRAEQPISGVSAGRVVL--GQVDRL-RIGDGQIWVCDYKTNRNPHLRAERTPVAYL 1145

Query: 935  PQLSLEAAALKA 946
             Q++   A L  
Sbjct: 1146 RQMAAYRAVLAQ 1157


>gi|325982026|ref|YP_004294428.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
 gi|325531545|gb|ADZ26266.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
          Length = 738

 Score =  101 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 75/704 (10%), Positives = 183/704 (25%), Gaps = 116/704 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-- 102
           + +     T +A +E+ +    +       +  I +   +      +    +  L     
Sbjct: 53  SGILAVTFTNKAAKEMLARITAMLPINPRGM-WIGTFHGLCHRMLRSHYQDA-GLPQAFQ 110

Query: 103 -VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            + +  +L  + R++            DL  +     P      I  AK        +  
Sbjct: 111 ILDSADQLALIKRILK-----------DLSADDKKFPPRQVQWFINNAKESG-----LRA 154

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE- 220
                +D+       +        +F     + + +R  +  A       +      +  
Sbjct: 155 AYVTPDDV-------FSRH---MLEF----YQAYEQRCHKEGAVDFAELLLRSYELLSRN 200

Query: 221 ----HLMKGTKGPIIIAGSTGSIPATARLMSTVANH--PNGAIVLPGLDCHIPTAIWNTI 274
                  +     I++     + P   + +  +A       A+V    D       +   
Sbjct: 201 EILCQHYRERFNHILVDEFQDTNPLQYKWLKLLAGTGTKETAVVFAVGDDDQSIYAFRGA 260

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
              +      +   +          +  L+        + + +N +   +          
Sbjct: 261 YSGNMRDFERDFGITK---------IIKLEQNYRSHGNILDAANALIENN---------- 301

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSAL 391
                  ++ L   +   +     + +  A N+ +EA  I   ++    E      + AL
Sbjct: 302 -------SERLGKNLWTAEGRGEPLRVYNAPNDFDEAAFIVEEVKTLHAEEGIALSEIAL 354

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +      +R ++  L    I   +  G+            + L  I   +D  A+  ++ 
Sbjct: 355 LYRSNAQSRVLEHSLFNAAIPYRVYGGMRFFDRQEIKHALAYLRLIANPDDDGALLRVIN 414

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P    G                                 +       K   H     + 
Sbjct: 415 FPARGIG------------------------------ARSLEQLQDDAKAQGHSLWAAAL 444

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                +   +      L+ +   V        +CG L +    +  +   + +      +
Sbjct: 445 QKCGGEVSLLQESHKSLKGVAKFVFLIMTMRQSCGELLLPQIVEYMLIHSELLVHYAKER 504

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
             +   E   + +++  S + E G+          + +                  L ++
Sbjct: 505 ESSERLENLNELINAATSFVHEIGND------SLTEFLAHASLEAGEHQAGSGRDALQLM 558

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F T+ L GL EG++P   + N       +  L      +   +    F   
Sbjct: 559 TVHAAKGLEFHTVFLSGLEEGLFPHENSLNESNGIAEERRLMYVAMTRARRRLYLSFTQ- 617

Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
                   +R L       IASR+L  +            +   
Sbjct: 618 --------SRMLHGQTRYNIASRFLDEIPQACLKWLQAAPRNPD 653


>gi|126179428|ref|YP_001047393.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
 gi|125862222|gb|ABN57411.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
          Length = 911

 Score =  101 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 81/857 (9%), Positives = 201/857 (23%), Gaps = 134/857 (15%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATAR 244
            +FL+   + +   L +    +        +               +I+        A   
Sbjct: 182  EFLEKL-RRYEASLDQHKRLTFNRMVQLAVENLQHRPEVAEHVKYLIVDEYQDINHAQDE 240

Query: 245  LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
            L+  +     G  +    D       W    E+     ++                    
Sbjct: 241  LIRLIGL---GGSIFVVGDPRQTIYQWRGSDEQYFEEFTTRYP----------------- 280

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                       V+  +              +       D   + +  +++      L E 
Sbjct: 281  ---------EAVTIHITENRRSTVAVIETANGFSDTFEDQHYDHMDPVRREQGGAYLAEM 331

Query: 365  DNEREEAISIAIALRMSLDEN---KKKSALITADRNLARR-VKLELTRFGINIDISAGIP 420
             ++  E   IA  ++  + E        AL+    + +      E  R  I   +   + 
Sbjct: 332  QSDITEVDWIADQIQALVREEKCSYSDIALLFRSVSTSAPPFIDEFRRRDIPFVVGGKVG 391

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L        +  L   +++   +            +  +      R ++ LE   +  N+
Sbjct: 392  LFRRPEILGIGQLFAWLWEDGFWQ-----------QGKWSRLPALRGEDLLEEAVVNWNQ 440

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
               D+                 + V + +                   + +  L  +  +
Sbjct: 441  GIPDL-------------ALEASDVLNLRRWKDSVLNSTYDNFSQVFGELLVLLGYHGLD 487

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
             +     + +++  +                    W  +                     
Sbjct: 488  PDDVRHAVIMANLGRFNTLLTDYETAIMLGGRRRNWETDL-------------------K 528

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                +++        E     I     + ++   +S+ L +  + +  +    +P +   
Sbjct: 529  GLCWYLNTYASSKYEEQTGDDIGGVDAVQLVTIHQSKGLEWPLVFVPCMVRQRFPSSMVG 588

Query: 661  NPFLSRVMQSDLNLKTAE-KYIGQAAHDFEMANGTRHL-IYTRSLRENNIPTIASRWLQR 718
                  +     ++   E     +    +      + + + +     N      S ++  
Sbjct: 589  KGRTWLISPELFDVAKYEGDLESERKLMYVALTRAKDVAVVSYFTSMNGRRKGRSAFVGD 648

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            +  L   +                   D                     RT+S  EI   
Sbjct: 649  IEDLPHVEPLSQRDTLPDHDYATGGAADE-------------------LRTFSAGEIVDY 689

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
                Y    R I   +         D    G   H  + E      N++   +   +   
Sbjct: 690  GKCGYFYRLRHIWGYEP-----GLTDYLGYGQTLHFCLREAADLMKNEDLSPMIA-VATA 743

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
            +D +F    +        +         F E        I      +  ++        +
Sbjct: 744  VDRNFYMPFMTEGRMEKIKRAAKNHLMRFAEKYRDDMLRIR----EVETRVEFPVQNAIV 799

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
             G  D I       V++ DYKT D             Q+ L       G    +    V+
Sbjct: 800  AGKVDVILHDGD-AVEVRDYKTSDTATTPEDS---ALQVQLY----TRGLC--VLGETVS 849

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018
                   +                 ++    ++  + E +  + +G+  F +        
Sbjct: 850  -------RGSVAFLEEAAVDAVDVTEQAVAGTMARVEEDIGRILSGD--FTACPGA---V 897

Query: 1019 NIQSEYDHLARVAEWRE 1035
              + +Y  + R   WR 
Sbjct: 898  CERCDYQGICR---WRA 911


>gi|99082686|ref|YP_614840.1| UvrD/REP helicase [Ruegeria sp. TM1040]
 gi|99038966|gb|ABF65578.1| ATP-dependent nuclease subunit A [Ruegeria sp. TM1040]
          Length = 1121

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 83/887 (9%), Positives = 223/887 (25%), Gaps = 114/887 (12%)

Query: 112  LARLILIWRNKLPDIIK----DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
            LAR+  +  + LP +          + P S  I       L ++   ++D +E    + E
Sbjct: 256  LARITAVTPDVLPLLEDVFLTGKSAKDPFSAKIGSFPTKKLRESNGVLMDQLEPFMARVE 315

Query: 168  DLHALKNEKYGMWWLLAA-DFLKIASKYWTERLVELNASSP----VGYQIALMRAEAEHL 222
                 +     M   +   DF ++    +  R             V  +  L        
Sbjct: 316  AARPKRLALDAMEKSIVLHDFARVFLPEYERRKQLRGWLDFDDLIVKARNLLNDPAVAAW 375

Query: 223  MKGTKG----PIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTA 269
            +          I++  +  + P    ++  +A                +    D      
Sbjct: 376  VLYRLDGGIDHILVDEAQDTSPVQWDVVEKLAQEFTAGEGARADVERTIFVVGDKKQSIY 435

Query: 270  IWNTITEKSTNITSSNTTYS--THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
             +      + +   +          +      L F       +  L +V  +   R+   
Sbjct: 436  SFQGADPDAFDRMQAEFGNRLKDTGEGLQNASLAFSFRSSAAILGLVDVVFDGEHRAGFA 495

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDV--ALIEADNEREEAISIAIALRMSLDE- 384
              +      SD+     L   +              ++  + R  ++ +A  +   + E 
Sbjct: 496  DDAKHQAFKSDLPGRVDLWPLVEKTDDEEERDWTDPVDRPSPRHHSVILAERIANHIKEM 555

Query: 385  -----------------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
                                         L+    +L   +       G+ I  +  + +
Sbjct: 556  IAQGVTIPEDGPERGTFQRRPVHAGDFLILVQRRSDLFSEIIRACKAAGLPIAGADRLKV 615

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
               L    + +LL  +    D +++A  +K P+  +   + +    + + E+      + 
Sbjct: 616  GAELAVKDIAALLRFLALPEDSLSLAEALKSPIFGWSEQQLFDLAHRRS-EMHLWPALRA 674

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              +       +L+ +  Q +         R+       A +L     +    +    +  
Sbjct: 675  RSEEFPQTMEILNDLRRQADFLRPYDLIERILTRHLGRAKILGRLGTEAEDGINALLSQA 734

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
             +                               +W + +   +             +  +
Sbjct: 735  LAYERT------------------EVPSLTGFLVWMQTDDLEIKRQMGAASSMIRVMSVH 776

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
              + ++    ++   T +     +  + + GT   R+                    + +
Sbjct: 777  GSKGLEAPIVILPDTTKRRPSPAAEVMEVDGTPLWRM--------------------SSD 816

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
                 +  + +  +  +           +    + LI   +   +       + ++  + 
Sbjct: 817  QMPPAMDAARVFAQEKQANERLRLLYVALTRAEKWLIVAGAGDLDKGGDSWYQRVEAAMK 876

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
              G   +D     G  +     +          +  +   P   +    ++      +  
Sbjct: 877  TMGALPYDAPGGEGLRWAHGDWEAPVFVPSDLTEEDEITLPEVFRRAAPAYVAPAATLRP 936

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
               +   + L          + D   RGT  H ++  L K            + +     
Sbjct: 937  SEDLGGAKAL---PGDSGLSEEDAKARGTALHLLLEHLPKLPEEDWDNRAEAIAQHEDWK 993

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
                E                 +   L  ++            +P    +    + L G 
Sbjct: 994  ALLAE-----------------ARQVLCSDDCADIFAPGTLAEVPVSADL--GTVRLHGI 1034

Query: 902  ADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
             DR+ +     V   D+K+        E   + +  Q+     AL+ 
Sbjct: 1035 IDRLVITPD-RVLAVDFKSNAVVPQSAEACPEGLLRQMGAYDVALRQ 1080


>gi|251773028|gb|EES53584.1| putative ATP-dependent DNA helicase, UvrD/REP family
           [Leptospirillum ferrodiazotrophum]
          Length = 796

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 82/695 (11%), Positives = 175/695 (25%), Gaps = 129/695 (18%)

Query: 49  IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP--PVSNI 106
           +   T++A +EL              LP + +   +        L     L P   VS+ 
Sbjct: 70  VATFTRKAARELVERISHRL--PDARLPYVGTFHSLSARLLR-RLADRAGLPPDFTVSDA 126

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETEEK 164
                L R I+       + +        +S   +        LA+ L            
Sbjct: 127 GDQKALVREIMRRHKVSEEDVAPQEILRQISQWKNARQTPGPELARRLFG---------- 176

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----A 219
                              +  F+    + + E L +  +         L+         
Sbjct: 177 -------------------SRRFMATCYEEYEEGLRKNRSLDYDDLLCRLVGLLSSQPDV 217

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
              ++     I++     + P    L+  ++       V+   D       +        
Sbjct: 218 ATALRQEFHHILVDEYQDTNPLQEELIRLLSRERRNVTVV--GDDDQSIYRFRGAEVAHI 275

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
              S       H   +   LL                           S       +   
Sbjct: 276 QRFS------DHYPGAGRVLLSR--------------------NYRSTSAIVDSATSVIR 309

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--SALITADRN 397
           +N       +  ++   S V L+E  +E  EA  +A  LR  +    +   +A++     
Sbjct: 310 KNDGRYMKTVTAVRGGGSPVLLMEFPDEEAEARGVAGILREWIAGGGRPSRAAVLFRTNA 369

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +  ++  +   G+      G  L  +  +  L + L  +    D +++A +   P    
Sbjct: 370 QSLPLEKAMAAAGVPFFRPGGGGLLESREARDLVAYLRLLVNPFDRLSLARIFNVPPRGQ 429

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G        A +                                    P        E  
Sbjct: 430 GDEAVEELSALSEAH---------------------------------PELPVAELLERL 456

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL--DEHRKLPNL 575
                  + + +    L       +     LS+ D         + +    DE  +   L
Sbjct: 457 AERGGRREPLGKLSALLREGSEAASRGDVPLSLLDRVVAATGYREWLTREKDEETRRRRL 516

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              EE + L+  F +  +  +     A          +      P  E    + ++   +
Sbjct: 517 ETLEEFRGLAGDFVREEDREASGPLAA------FLEDLTLSREGPDAEGRERVGLMTIHQ 570

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           S+ L FD +++ GL + +               +S    +++     +    +      R
Sbjct: 571 SKGLEFDCVVVAGLEDQLL------------PFRSFAGGRSSTDIEEERRLFYVAMTRAR 618

Query: 696 H-LIYTRSLREN----NIPTIASRWLQRLLVLGGT 725
             L  T +              S +L+ +      
Sbjct: 619 ERLHLTWARTRRIYGKTQSFGPSPFLRDIPGELSA 653


>gi|315655323|ref|ZP_07908223.1| exodeoxyribonuclease V beta subunit [Mobiluncus curtisii ATCC 51333]
 gi|315656764|ref|ZP_07909651.1| exodeoxyribonuclease V beta subunit [Mobiluncus curtisii subsp.
            holmesii ATCC 35242]
 gi|315490263|gb|EFU79888.1| exodeoxyribonuclease V beta subunit [Mobiluncus curtisii ATCC 51333]
 gi|315492719|gb|EFU82323.1| exodeoxyribonuclease V beta subunit [Mobiluncus curtisii subsp.
            holmesii ATCC 35242]
          Length = 285

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 83/253 (32%), Gaps = 28/253 (11%)

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
            P P PP        S S  KQ    P     + + KL              RG+L H ++
Sbjct: 8    PAPRPP------ALSASSAKQFQQCPLKWRFKYVDKLPEPQSP-----AALRGSLVHKVL 56

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEH 870
             ++      +                         E L    +   +    ++  ++   
Sbjct: 57   EDMFDLPPAERQAPTVRETVDRAWEKVTDGAYKLSEVLAQTSEQELKAAARQLIDAYFSL 116

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
            E+  +  +      +  +  + S G+ L GF DR++   +G V I DYKTG  P      
Sbjct: 117  EDPRR--LHPSGRELGVETVL-SSGLRLRGFIDRVEQAGNGDVRIIDYKTGKAPDMRFTG 173

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
            +    Q+ L A   +     ++  ++   L ++          +T D    + D+ + + 
Sbjct: 174  E-YVFQMRLYALLYREQ--YRVTPKRT-QLLFLG----GNPQVLTFDPTDANVDDFTAEI 225

Query: 991  LKNLIEIVTLLQN 1003
                 +I   LQ 
Sbjct: 226  NALWSDIAAHLQA 238


>gi|320539713|ref|ZP_08039377.1| exonuclease V (RecBCD complex), gamma chain [Serratia symbiotica
           str. Tucson]
 gi|320030325|gb|EFW12340.1| exonuclease V (RecBCD complex), gamma chain [Serratia symbiotica
           str. Tucson]
          Length = 1125

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 116/983 (11%), Positives = 251/983 (25%), Gaps = 136/983 (13%)

Query: 16  PFFREMIPALLNGT-LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74
              + +  AL+    L + FR +           + V +    Q L+ +  E  G  + I
Sbjct: 11  DLLKTLTSALIARDPLADPFRQE----------VVLVQSPGMAQWLQMQLAEQFGIAANI 60

Query: 75  LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
                 L      +    +L         S      +L  L+     +L  +      + 
Sbjct: 61  A---FPLPATFIWQMFTHVLPDIPKESAFSKDAMTWKLMWLLP----ELLTLPAFAPLQH 113

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
            L+          L   +AD+ D       KW  L + +  +       A  +       
Sbjct: 114 YLTDDGDKRKIHQLVGRVADLFDQYLVYRPKW--LESWQRGERIDGLAEAQQWQAPLWAR 171

Query: 195 WTERLVELNASSPVGYQIALMRAE------AEHLMKGTKGPIIIAGSTGSIPATARLMST 248
             E   EL    P  ++  L          AEH   G    + I G +   PA    +  
Sbjct: 172 LVEYTRELGQ--PEWHRANLYSRFISTLDNAEHCPPGLPQRVFICGISALPPAYLDALQA 229

Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK---------- 298
           +  H +  ++      +    I +               + T  Q    +          
Sbjct: 230 LGRHIDIHLMFTNPCRYYWGDIQDYAFLARLQSRKRRHYHQTREQNLFREPNQAVHLFNS 289

Query: 299 ---------LLDFLDIKREDVKRLGN---------------VSNEMYGRSMVISKSFLPP 334
                    LL        D   L +                 N ++     + +     
Sbjct: 290 EGQQQLGNPLLASWGKLGRDYLYLLSQLEGAQEVDAFVDIPADNMLHAIQRDMLELEDHA 349

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSA 390
                  T         ++     ++L    + + E   +   L        +   +   
Sbjct: 350 VIGITPETLENSVTKRRLEPEDRSLSLHLCHSPQREVEVLHDQLLTMLAEDPELTPRDII 409

Query: 391 LITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
           ++ AD +        +         +   IS               SLL+          
Sbjct: 410 VMVADIDSYTPYIQAVFGNASAECYLPFAISDRKARQAHPALQAFISLLDLPQSRFTAEQ 469

Query: 446 IATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRI 496
           +  L++ P    +F   E+ L   +  +    +R   +  ++ +L        +      
Sbjct: 470 VLALLEVPALAARFAIGEEGLRLLRYWVGESGVRWGLDDDNVRELDLPATGQHTWRFGIT 529

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKNSTCGNLSISDWTK 555
                     +          + +  L   +   +  L+ +    +       S+ +W  
Sbjct: 530 RMLLGYAMDSNAGDWQGILPYDESSGLAAELAGQLADLLNSLGCWRQWLSEMRSLEEWLP 589

Query: 556 LTVTCL-QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           L    L      D   ++     E++ + +       +              D +   +D
Sbjct: 590 LCRQLLYTFFVQDGETEVVLALIEQQWQQVIRF---GLAARYPNAVPLSILRDDLVAHLD 646

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              +  +      +     +  R + F  + L G+N+GV+P+      F     Q     
Sbjct: 647 QARISQRFLAG-QINFCTLMPMRSIPFKVVCLLGMNDGVYPRALPLLGFDLMAQQPKCGD 705

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGT------- 725
           ++             + +  + L  +   R   +N     S  +  LL            
Sbjct: 706 RSRRDDDRYL-FLEAILSAQQRLYISFIGRSIQDNRERYPSVLVTELLEYLEQSYCLPGD 764

Query: 726 ---DFFDNLKKRGQCYLDW---------------------TRKLDYTTKQPHYKRPKPFP 761
              D   + ++ G+  L W                        L           P   P
Sbjct: 765 EDLDADGSAQRVGEYLLKWHARMPFAVENFLPGSEQQSYAAEWLPAADGHGTAPPPFNQP 824

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILK----LDFIPHFKKDPDRTDRGTLFHNIIT 817
            L A  +  S  ++++    P   + +  L     L+      ++P   D  + +     
Sbjct: 825 LLPAGEQQISLDDLRRFYRHPIRAFFQLRLGVSFTLEETELPNEEPFTLDNLSRYELNSQ 884

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            L       +   +   +          E        I+     +      E     +  
Sbjct: 885 LLNTLIEGDSPSCLFQRVCAAG------ELPFGAFGEIYWQKQQEEMIELAEKVRAER-- 936

Query: 878 IEKIFVNIPAKMAIESIGIHLTG 900
                V+   ++ IE  G+ ++G
Sbjct: 937 ----GVDHSLELDIEIDGVSISG 955


>gi|85373841|ref|YP_457903.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis
            HTCC2594]
 gi|84786924|gb|ABC63106.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis
            HTCC2594]
          Length = 1150

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 91/824 (11%), Positives = 193/824 (23%), Gaps = 101/824 (12%)

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHLMKGTKG 228
               + + A    +  +  W +R                        +     + +     
Sbjct: 336  LAEYLVPALTLGRNFALAWDDRKRREGLIDFDDQIRRASQLLKNSALADWIRYKLDRQFD 395

Query: 229  PIIIAGSTGSIPATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
             I++  +  +  A   ++  +                 +    D       +   + ++ 
Sbjct: 396  HILVDEAQDTNQAQWDIIRALTGDFFTGFGQREDKLRTIFVVGDYKQAIFGFQGTSPQNF 455

Query: 280  NITSSNTTYSTHPQYSLA---------------KLLDFLDIKREDVKRLGNVSNEMYGRS 324
                           + A               + L  L + R        +    +   
Sbjct: 456  AAQKEIYRREIDAAIANAEALARDTRSKPVVDLRALQDLGLDRSYRTAQPVLDFVDHAIE 515

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE--------REEAISIAI 376
             +   S      +D    D     +   +   +        +E        R  A  IA 
Sbjct: 516  AIGHTSIGLEREADRHEGDTRPGYVALWEPVVAGAEDDGEPSEEGWLPGPERAMADRIAD 575

Query: 377  ALRMSLDE-------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
             +R  LD+                   L+   R LA  +   L   G+ +     + L  
Sbjct: 576  QVREWLDKGHPLAKGTKRNAGPGDIMVLVRKRRELAGLIVARLHARGVPVAGVDRLRLGA 635

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
             L    L + L    +  D +++A L+  PL  +   +      +     +     K+ +
Sbjct: 636  PLAVKDLMAALRFAAQPLDDLSLANLLVSPLGGWSQEDLLEHGYRPDKVRLWDHLRKSEH 695

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
              +      L ++  + +          +          LV  +                
Sbjct: 696  PFVVETVERLRQLLQRVDYELPEALLHWILTGPWRGRAKLVARL---------------G 740

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
               N  I +                   +   WF+     L             +  +  
Sbjct: 741  REANDPIDELVNAAFAYSATDTASVQGFIQ--WFDAGEGELKREPGGDDGLVRVMTVHGS 798

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
            + +     ++   T  P   ++  L +      + +    L     +E   P   A+   
Sbjct: 799  KGLQAPIVILADATGNPDASRTGGLELQEDTSGKSVPIPALP---KDEKHGPVAEAEQAA 855

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
             +   +    L        + A     A G R L                 W  RL  L 
Sbjct: 856  KAAEREEHWRLLYVAMTRAEEALYVGGALGQREL---------KKGPAEDSWYARLEPLF 906

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
              D   +     +       +   ++           P    QP        + L     
Sbjct: 907  LDDALADPIWGARRERGALPEPIVSSGDVDPPAQINLPDWATQPIGPEPKPPRPLAPSS- 965

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
               A            +       RG L H+++  L      +        + Q      
Sbjct: 966  ---AGEEQGASPPLPPEIAAQAARRGVLMHSLLERLPDVTPAEREVRARAWLAQQAPEIA 1022

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
            + E        +          + L+               +P    +      + G AD
Sbjct: 1023 DDERDEMLCRAL----------AVLDEPGFAPIFAPDALAEVPLAAVVAGQ--VIAGTAD 1070

Query: 904  RIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALK 945
            R+ +     V + D+KT   P          I  Q++   AAL+
Sbjct: 1071 RLLVTDD-EVLVVDFKTARRPPAAIEDIPASIIRQMAAYVAALE 1113


>gi|282890111|ref|ZP_06298642.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499962|gb|EFB42250.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 721

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 77/739 (10%), Positives = 198/739 (26%), Gaps = 109/739 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             + +   +     +  + +     T +A  E+++   E+T         I +   +   
Sbjct: 31  RVVTQRIAHLIDEGIPPSQILAVTFTNKAASEMQNRVKELTFHSVL----ISTFHSLGAR 86

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                +           +  R   +          + + +++L+       P +      
Sbjct: 87  ILRESIH-------AFPHYSRNFVIYDE-EDVLKVIKNCMEELHISDKKLEPKAFK---- 134

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKYWTERLVELNASS 206
                  +I   +   K  + ++    E      +             +  R+ E NA  
Sbjct: 135 ------HLISQAKNALKNPDQINDFDAESNAELHFQK-------VYAAYQRRMSEYNALD 181

Query: 207 PVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                   +R   E+       +     ++I     +  A   +++ +        +   
Sbjct: 182 FDDLLYLTVRLFREYPEILAYYQNRWQFLLIDEYQDTNDAQYAMVTHLVE--KTHNLFVV 239

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            D       W      +      +   +          +  L+        + + SN + 
Sbjct: 240 GDPDQSIYSWRGAKIYNILNFEKDFPGAQ---------VIHLEQNYRSRSNILDASNALI 290

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
             +                  + L+  + + +     + L  A+ ER EA  IA  ++  
Sbjct: 291 DNNQ-----------------NRLKKSLWSDRGAGEKIKLFPAETERFEAGFIAERIQNY 333

Query: 382 LDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
            ++     +  +       +R  +       I   I  G+          + + L    +
Sbjct: 334 HEQGIPYNEMVVFYRTNFQSRVFEDTFLHNDIPYVIVGGVSFYQRKEIKDILAFLRIANE 393

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
            +D+++ A  +  P    G            LE + +   KN   I+     ++      
Sbjct: 394 ASDYVSFARTINLPKRGIGDTT---------LEKIRVHAQKNRMSILSFAQALI------ 438

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                   +  +L+++ +E     +  I                     +I +  +  + 
Sbjct: 439 --EQQPLPFIFKLNQKQQEGLKEYLQVI-----------ARLQEISAKGTIQEGVEAAIK 485

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
               + L +         +   + L S  ++   +      +A      +  L    T+ 
Sbjct: 486 ESGYLGLLKEDAETFQDRKANLEELVSKANEWETSTPEPSLSA-----FLEELSLKSTID 540

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                 + + ++     + L F  + L G+ E ++P   ++  F +   +  L      +
Sbjct: 541 DTHHSKNRVNLMTIHNGKGLEFTAVFLAGMEEDLFPHANSRGNFDALEEERRLCYVGMTR 600

Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                   F            R L        ASR+L  +           L +R   Y 
Sbjct: 601 AKEYLYLTFARN---------RHLWGTIRSQRASRFLSEIPPNFIEKII--LNRRPDSYR 649

Query: 740 DWTRKLDYTTKQPHYKRPK 758
               +          + P+
Sbjct: 650 PPIPEYKMVEPVIAVEEPE 668


>gi|145637245|ref|ZP_01792906.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae PittHH]
 gi|145269497|gb|EDK09439.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae PittHH]
          Length = 1128

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 114/975 (11%), Positives = 241/975 (24%), Gaps = 140/975 (14%)

Query: 39  LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94
           L P        I V +   +Q L+ E  + TG  + +   +P        + +   A  L
Sbjct: 24  LPPEDPFQQDIILVQSPNMVQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
            +  L  P         L RLI I+  K  +    L      S          L+  +AD
Sbjct: 78  PATALENPFDKDSMTWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135

Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + D       +W             + +   +       +       K   + W   +V+
Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNDTLFAQIQSNTKWQGELWRSLVVD 195

Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                  A+         +   A+    K     I I G      A   ++  +++  + 
Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297
            +            I +   +   +            Q   +                  
Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315

Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                          +                 Y  +                    LEN
Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIKSNSLLGQLQSQILHLEN 375

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
           K  NI K    + L    +   E   +   L    +++     K   ++ AD N      
Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPNLTPKDVVVMVADINQYTPYI 435

Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             +          I   +S      + +  S   +LL           +  L+  P  + 
Sbjct: 436 QAVFGQKNGGAPQIPFSLSDNKLSESDVLVSSYLTLLGLKESNFSAEDVLELLDIPAVRE 495

Query: 458 GFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            F           E                G   +     L+ ++L     ++       
Sbjct: 496 RFNISLADLPLVREWVADSGIRVGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                S   K      + H    ++ L       +      SI  W ++    L +  + 
Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHERLQQAH------SIEKWQEILTALLSDFFVR 609

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624
                  +++ +         +++ E    +        ++I  +I     +        
Sbjct: 610 NEDTNDMIFYIQ------EKINELAEHLKTLHFTEKLQAEVIADVITMKLEDAPNSLKFL 663

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           +  +     L  R + F  + L G+N+  +P+    N F           +         
Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722

Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL---------LVLGGTDFFDNLK 732
               E     R     +   R   +N P   S  + +L                  ++  
Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQSENENVLTVIEHPM 781

Query: 733 KRGQC-------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                                W     +     + +          +        +   +
Sbjct: 782 TAFSPDNFKYNEKFTRSFATKWLPIAQFDASSNNSEFAVTMTENPEKIEEVELDALVSFV 841

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQ 837
            +P   +  + L + F    ++  D                   ++      ++ +L +Q
Sbjct: 842 ENPVKFFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYSLNNDLIYLDEQ 890

Query: 838 IIDSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE--- 892
               +F +  +   +            I  + LE +EKI    E    +I   +A++   
Sbjct: 891 NFADYFRQAEVKGVLPRAEFGKVYAENIRDNVLEFKEKIADLGEPKQASIDFNIAVDWQN 950

Query: 893 -SIGIHLTGFADRID 906
            +  I L G+ D + 
Sbjct: 951 ENQKIRLFGYMDALF 965


>gi|296332487|ref|ZP_06874948.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            spizizenii ATCC 6633]
 gi|305673768|ref|YP_003865440.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp.
            spizizenii str. W23]
 gi|296150405|gb|EFG91293.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            spizizenii ATCC 6633]
 gi|305412012|gb|ADM37131.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            spizizenii str. W23]
          Length = 1234

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 102/839 (12%), Positives = 219/839 (26%), Gaps = 124/839 (14%)

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITE 276
            EA    +     +++     +      ++  V + P     +    D       +     
Sbjct: 392  EAARFYQEQFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEP 451

Query: 277  KSTNITSSNTTYSTHPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
                      T S                  D LD      K+L              ++
Sbjct: 452  LLFLSKYKRFTESGEGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGK-IGEVDYDEQAE 510

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--------- 380
              L     D   T+     I N ++  +     E +  + EA +IA  +R          
Sbjct: 511  LKLGAAYPDNDETETELLLIDNAEETDAGEEAEELETVQFEAKAIAKEIRKLISSPFKVY 570

Query: 381  ------SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                    +   +   ++      A ++  EL   GI +  +        +  ++  S+L
Sbjct: 571  DGKTKTHRNIQYRDIVILLRSMPWAPQIMEELRAQGIPVYANLTSGYFEAVEVAVALSVL 630

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
              I      + +A++++ P+      E  L R +N                     L   
Sbjct: 631  KVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRNDELYQK 690

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                     H+  W++          +  V    + +  +      K        + D  
Sbjct: 691  LETFYG---HLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRA 747

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            +   +          R +  +    +    +   S+  +    +  ++ + ++       
Sbjct: 748  RQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFAA 807

Query: 615  GETVKPKIEK------------------SSTLFILGT--------------LESRLLNFD 642
            G      +                       L I                 L S  L   
Sbjct: 808  GLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVL 867

Query: 643  TLILGGLNEGVWPKNTAKNP------FLSRVMQSDLNLKTAEKYIGQAAHDFE--MANGT 694
             + L    E ++   + K+       + +   Q+D  L   ++Y  +   DF        
Sbjct: 868  YVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQAKTYLDFIGPALARH 927

Query: 695  RHLIYTR---SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            R +       +    +I    +R+  R+ +       D+L++R +   +    +      
Sbjct: 928  RDMEVLAENGAATHADISGHPARFAVRM-IHSYDLLDDDLEERTEEKSERLEAIRKGEPV 986

Query: 752  P-----------HYKRPKPFPPLEAQPRTYSFSEIKQLI--------NDPYAVYARRILK 792
            P                 P   +       S SEIK+            P       IL 
Sbjct: 987  PGTFAFDEKAREQLSWTYPHHEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKPADGSILY 1046

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                   KK     ++GT  H ++  +    I     E    + ++ +     E     I
Sbjct: 1047 RRPAFMMKKGLTAAEKGTAMHTVMQHIPLTHI-PTIEEAEQTVHKLYEKELLTEEQKTAI 1105

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGF 901
            D        +I   F           +     +P  +A+               + + G 
Sbjct: 1106 D------IEEIVQFFHTEIGGQLIGAKWKDREVPFSLALPAKEIYPDAQEADEPLLVQGI 1159

Query: 902  ADRIDLLKSGFVDITDYKT------------GDNPKKETAQKLIDPQLSLEAAALKAGS 948
             D +   + G + + DYK+            G  P  +      + Q+ L   A++  +
Sbjct: 1160 IDCLYETEDG-LYLLDYKSDRIEGKFQHGFEGAAPILKKR---YETQIQLYTKAVEQIA 1214


>gi|295111139|emb|CBL27889.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Synergistetes
            bacterium SGP1]
          Length = 1213

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 85/840 (10%), Positives = 189/840 (22%), Gaps = 60/840 (7%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                F   A   W          S     +    A      + T   I++     + P  
Sbjct: 376  ALLRFCAAAWGLWDAERRRRGLLSFSDMILQARAAVESGKAQRTFRHILVDEFQDTDPLQ 435

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA---KL 299
              ++ T+  H     +    D       +                       S      L
Sbjct: 436  FGMIETL-RHEGVRSLFAVGDPKQSIYGFRHAEPSLFAEAIGRADARVTLDVSFRTRGAL 494

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP--------N 351
            L  L+     + R G  ++E   R      S           T      +          
Sbjct: 495  LTRLNDLFAHIWRDGLGTSEAMSRLEFEPLSPAGSGERGAGTTAPFSVLLAVKEGRAVLG 554

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFG 410
             ++  +           EE  ++      +L        A++   R     ++      G
Sbjct: 555  ARRRLAGALARRVARWVEEGRTVWDKGLNALRPLRYGDFAVLARTRGSHELLEDAFAAAG 614

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            +           +    + +  LL A     D  A+   +  P +     E         
Sbjct: 615  VPAVQDRSRDYFSRGEVTDVICLLRAAEDWEDGAAVFGWLMSPFSGVPIDEARR------ 668

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                  R          +   + + +              R +       +  +D   + 
Sbjct: 669  ---CLERIGGTLRTGRGVMEALKEALPDAAARLERTSLIGRRNG--PAAILSPLDRDRRW 723

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +  L   +  +       +++           ++          L    + +   +   +
Sbjct: 724  LANLPEKERLRALRNVRRAVAIARSFQRGSASSLAACADWMDRALRRGVDMEE-PAWHGE 782

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
             +        +A + ++     I     + +         LG   + L +  +       
Sbjct: 783  GVNAVLLSTVHASKGLEYPVVAIFDTAKRRRPRTLCPSRTLGAAFADLPDELSASRPSAR 842

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS----LREN 706
            E +                    L    +        +  A   +  +         +E 
Sbjct: 843  EPLSMAWERA-------------LTRQGEREEDLRLLYVAATRAQDSLIHCGLVTFGKEG 889

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY--------LDWTRKLDYTTKQPHYKRPK 758
            + P     W   +L              G                K       P      
Sbjct: 890  SAPAEKGGWTSIVLDWMQGRGDCGPDLTGPDVELIPSGDGAQPAGKPQRAVPTPAPVAVA 949

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL------DFIPHFKKDPDRTDRGTLF 812
                   +    S +    +   P A   R    L            +     +D G+L 
Sbjct: 950  RPDSGTRELAVLSATSFSLMEWCPLAWRRRYRQGLDLAWEAPRGAAEEDGRGGSDLGSLA 1009

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H I+        +        L                  +   R+        F+  E 
Sbjct: 1010 HWILARWPSAEGDAEAELERWLTDPRALRSLPTLLRDVWREEENRNALRPWLLHFVGSEA 1069

Query: 873  KI-QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
             +       +     A   +E  G+ L+G  D +   +     + DYK      +   ++
Sbjct: 1070 GVMVRGALPLGARREAGFRVEVGGLALSGAMD-VVWREGEIWRVLDYK--VTLMQNAPEE 1126

Query: 932  LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
            L   QL L A A + G+       +      + L+++  +     +  +     +   + 
Sbjct: 1127 LYSAQLDLYALAARKGAELAGAPCRRVEAGLVFLRERSPLRMRKVEDWEAIEGRVRAAAR 1186


>gi|114328674|ref|YP_745831.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis CGDNIH1]
 gi|114316848|gb|ABI62908.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis CGDNIH1]
          Length = 1159

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 98/795 (12%), Positives = 200/795 (25%), Gaps = 74/795 (9%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
             +       +  L+     W    ++      +        A  +  + GT      AG 
Sbjct: 368  DFSDLIGRTSALLREPGAAWVLYKLDGG-IDHLLLDEVQDTAPEQWEIAGTLTAEFFAGL 426

Query: 236  TG-SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI---TEKSTNITSSNTTYSTH 291
               +     R +  V +         G D       W  I     +       +   +  
Sbjct: 427  DDRAEQGKPRTVFAVGDPKQSIYSFQGADP-QAFRHWRGIMAHRVQQIGYEWRDRPLTVS 485

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
             + +   L     +  + + R G +  E   R +                        P 
Sbjct: 486  FRSTAPVLALTDAVFADPLARQGVIEPEETLRHLPDRAEDAGTVEIWEPVQTPETPTRPA 545

Query: 352  IQKCFSDVALIEADN--EREEAISIAIALRMSLDENKKKS------ALITADRNLARRVK 403
             Q          A +      A  IA  +  +L    +         L+   +  A  ++
Sbjct: 546  WQPAEEYGTHTTAASLLAGRLADWIASRIGQTLPSENRPIHAGDYLILLRRRKPFAPLLE 605

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L   G+ +     +PL++    + L +L + +   +D MA+A L+  PL         
Sbjct: 606  RALKLRGVPVAGLDRLPLTSQPAVADLLALCDTLLLPDDDMALACLLTSPLGGLSDDSLM 665

Query: 464  LSRAKNA-LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                         LR  +      D  +  L+ +  Q + T      S      +  A L
Sbjct: 666  ELALGRRDTLWGTLRKRRKERTAWDQAASFLEDMLGQVDYTTPHALLSAALVRHRGRARL 725

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
                  +   P+                S   +  V  L+    +  R++ +        
Sbjct: 726  FARLGAEASEPIDELLNAAMRYAQLHPPS--LQGFVHWLRRSAPEVKREMSSGGQ----- 778

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
               ++    +     ++A  +   D ++      ++    +  + L +     ++    D
Sbjct: 779  ---AVRIMTVHGSKGLEAPIVILPDTVSTPRTENSILWTEDPETGLSVPLWKPNQDFQCD 835

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
            +  +    E                         A +        +      R  +    
Sbjct: 836  SFAVLEAKEQ------------------------AARQEEYNRLLYVALTRARDRLLVCG 871

Query: 703  LRENNIPTIAS--------RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                               R ++RL              R         +   T      
Sbjct: 872  WLGKENKPPPDESWYAAIRRGMERLPNAETVGTDHGEVIRLTSPQQRAAQQARTDISTPV 931

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH- 813
            + P P    +A     +    + +  +P A        L  +P          R      
Sbjct: 932  QAP-PAWMGQAPDWQPAPRPAEPVRPEPLAPSRPDNADLGPVPAADSPLIADRRARFRRG 990

Query: 814  NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
             +I +L++        E    MK+ +      E                   + L+H   
Sbjct: 991  QVIHQLLQHLPLLPAKEREAAMKRFLLQTLPSEADHVAKQ----------ISAILDHPRL 1040

Query: 874  IQSSIEKIFVNIPAKMAI--ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETA 929
                       +P    I  +     + G  DR+ +L    + I DYKT  +P       
Sbjct: 1041 AALFGADGRGEVPLTGVIGPDDKPQVIGGIVDRLAVLPE-RILIADYKTNRHPPASISET 1099

Query: 930  QKLIDPQLSLEAAAL 944
              L   Q++   A L
Sbjct: 1100 PVLYLRQMAAYRAVL 1114


>gi|332652747|ref|ZP_08418492.1| ATP-dependent helicase PcrA [Ruminococcaceae bacterium D16]
 gi|332517893|gb|EGJ47496.1| ATP-dependent helicase PcrA [Ruminococcaceae bacterium D16]
          Length = 835

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 84/788 (10%), Positives = 200/788 (25%), Gaps = 125/788 (15%)

Query: 12  APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
                F          G          L+P    ++     T +A  EL+     + G +
Sbjct: 93  PEDLDFLENYANT-GEGDQDRMVSLCALDPAAPWTILAITFTNKAAGELKDRLSAMLGPE 151

Query: 72  STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
           +             E+ + +    +      V  ++R +E       +     D    + 
Sbjct: 152 A-------------EDVWASTFHSAC-----VRILRRDIERLGFASSFTIYDTDDSLRVI 193

Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
            +    L +         +++   I   + +    ED       +    +    + +   
Sbjct: 194 KDCLKELELDDKQFPP--RSVLGYISRAKDQMLLAED--YAAQSEKSGDYR--LNKIAKV 247

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-----GPIIIAGSTGSIPATARLM 246
              +  RL E NA       +  +R   +              ++I     +      L 
Sbjct: 248 YTRYQHRLWEANALDFDDIILHTVRLLQQFEEVRAYYQRKFRYVLIDEYQDTNNLQYLLA 307

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
           ST+A       V+   D       +   T ++            +P+    +L +     
Sbjct: 308 STLAGGYENFCVV--GDDDQSIYRFRGATIENILSFEKQ-----YPRCRTIRLEENYRST 360

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
           +  ++    V     GR                        ++         + +  A N
Sbjct: 361 KHILEASNAVIRNNQGRK---------------------GKELWTKAGEGEKLQVYTAMN 399

Query: 367 EREEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
           E +EA  +A  +     + +  K  A++      + +++    R GI   I  G      
Sbjct: 400 ENDEAQYVANQILDDFGQGRAWKDHAVLYRMNAQSNQLETAFKRSGIPYRIIGGTRFFDR 459

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                +T+ L  +    D + +  ++ +P    G      ++A    E            
Sbjct: 460 AEVKDMTAYLAVLNNPEDDLRLQRIINNPPRGIGAKTIETAQAIAQRE------------ 507

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                                    S  +  D       ++     +             
Sbjct: 508 -----------------------GASLYAVIDNARMYPELERSAAKLAAFTNLMGELTGL 544

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE-EEGKTLSSLFSKIIETGSCIKANAI 603
              L +  + +  +       + E +         E  + L +     +E          
Sbjct: 545 LTTLPLDQFYEEMMIRTGYAAMLETKNTVEDRTRLENIRELLTSIRGYMENAGDEP---- 600

Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                +  +     +         + ++    ++ L F  + + G  EG++P +      
Sbjct: 601 TLAGFLDEIALYTDLDSHDPDQDCVVMMTMHSAKGLEFPVVFVVGAEEGIFPSSRIMGE- 659

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE----NNIPTIASRWLQR 718
                         ++   +    +      +  L  T + +            SR+L+ 
Sbjct: 660 -------------PDEMEEERRLCYVAMTRAKEKLYLTCAGQRMLFGRTSANRPSRFLEE 706

Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLD------YTTKQPHYKRPKPFPPLEAQPRTYSF 772
           +          N   RG  +     +           + P+ +RP+P  P       +S 
Sbjct: 707 IPPEHLERSGRNFLDRGDSWGGMPSRTSGYGGYAKPERSPYDQRPEPRAPQRRDYGGFSR 766

Query: 773 SEIKQLIN 780
           +       
Sbjct: 767 AMGTSAAP 774


>gi|222153135|ref|YP_002562312.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J]
 gi|222113948|emb|CAR42197.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J]
          Length = 755

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 83/696 (11%), Positives = 195/696 (28%), Gaps = 121/696 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R     +    +T   +I +   +       +       N     
Sbjct: 54  NILAITFTNKAAREMRER--ALLLNPATQETLIATFHSMCVRILRRE-ADHIGYNRNFTI 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++             L P+       S    I  AKN  D++D +  E
Sbjct: 111 VDPGEQRTLMKRILKNLN---------LDPKKW--NERSILGTISNAKN--DLLDEMAYE 157

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            +  +    +                    K + E L    A       +  +R   ++ 
Sbjct: 158 AQASDMYSQIV---------------ARCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNP 202

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 203 EVLSYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFQNICVV--GDADQSIYGWRGADMQ 260

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  +  L +     +  ++   +V      R              
Sbjct: 261 NILDFEK-----DYPKAKVVLLEENYRSTKTILQAANDVIRYNKNRK------------- 302

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
                   E K+         +    A++ER+EA+ IA  +     E     K  A++  
Sbjct: 303 --------EKKLWTQNDQGEKIVYHRANDERDEAVFIASTISNMCLELGKSFKDFAVLYR 354

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++    +  I   +  G    +      L + LN +   +D ++   +V  P 
Sbjct: 355 TNAQSRTIEEAFLKSNIPYTMVGGTKFYSRKEIRDLIAYLNIVANPSDNISFERIVNEPK 414

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G       R                     L +        + ++          + 
Sbjct: 415 RGVGPGTLEKLR---------------------LYAYDSQLSLLEASSNLFLSPLKGKAA 453

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           +       L          L + + + +            + T    Q    +       
Sbjct: 454 QAITDLATL----------LTSLRQDLDHLSITELAEALLEKTGYLEQLKIQNTLESQAR 503

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  +++  F    ++ +  ++        +  L           +S+ + ++   
Sbjct: 504 IENIEEFLSVTKNFDD-NQSPTNDESGIDTLGRFLNDLALIADTDDDKTESAEVTLMTLH 562

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P + A               +  ++   +    +      
Sbjct: 563 AAKGLEFPVVFLIGMEEGVFPLSRAS--------------EDQDELEEERRLAYVGITRA 608

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLLVLGGT 725
             +++     TR+L         SR+L+ +      
Sbjct: 609 EQILFLTNANTRTLFGKTNYNRPSRFLREISEDLLA 644


>gi|188582349|ref|YP_001925794.1| hypothetical protein Mpop_3104 [Methylobacterium populi BJ001]
 gi|179345847|gb|ACB81259.1| conserved hypothetical protein [Methylobacterium populi BJ001]
          Length = 884

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 91/746 (12%), Positives = 185/746 (24%), Gaps = 95/746 (12%)

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
              +   +  I   +     S     D     +         ++ + A     EAI     
Sbjct: 166  PLLQALTTHIPVQWTAGPRSVPAWLDSTSVTVTRAPAQEPGISAVSAATAYHEAIEAMRW 225

Query: 378  LRMSLDENKKKSALITADRNLARRVKLELT---RFGINIDISAGIPLSTTLHSSILTSLL 434
             R  L      S +  A  + A      L       I++    G+   TT       +L 
Sbjct: 226  ARNLLASGVSPSEIAIATASPADYDDHFLALRADANIDLHFVHGVRTVTTREGQAAAALA 285

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            + + +      +  L                           R +     + +    VL 
Sbjct: 286  DIVVQGLSQSRLRRLAA-----------------------LCRDSGPFETLPEGWLRVLP 322

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
              A            +RL+ ED       V  +   +  L       +            
Sbjct: 323  TDAPLSTPGAWNRLLARLTPEDWPDGADHVPALRTAVDTLAKGSDAASEIGDAFLKGRAL 382

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
             +    L                +++G       + +    S + A+   ++ ++     
Sbjct: 383  AIWRKVLLAGPAASIDATLETLKQDDGLEACVCVAWMP--ASALAASPRRFVRLLGL--- 437

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              +  P+      L     + + +L+   + L    +      T  +  +    + D + 
Sbjct: 438  NSSRWPRGIAEDRLIPDHIIPTPVLDPLPVNLADRRDFETIIATTADTVVLSRARRDSDG 497

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            +   +    A                R+    +  +   R + R             +  
Sbjct: 498  RLLGRSPLLAG-------RGDETYLRRNATPAHAFSETDRLMARPQEFAADPQAVGAQGC 550

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
             + +          T      R      L    RT S S +++L+ +P +          
Sbjct: 551  WRDWRRA-----EVTPHDGLVRADHPLVLAILGRTQSASSLRRLLRNPLSFVWVYAFGWR 605

Query: 795  FIPHFKKDP--DRTDRGTLFHNIITELIKKRINKNTPEINH-----------LMKQIIDS 841
                  +    D    G L H ++   ++                             D 
Sbjct: 606  EPQSSAEPLVLDALGIGDLVHMVLDRALRDLETGGGLASADTETIEAAVARAAQAVAADW 665

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------------- 888
              E+   P  I          ++   L + ++I       F  +P               
Sbjct: 666  ESERPVPPSVIWGRTLDDARVMAGRALSYGDEILPGAR-AFGEVPFGGLEPKSDAETPWD 724

Query: 889  ----MAIESIGIHLTGFADRIDLLKSG-FVDITDYKTGDNPKKE-TAQKLIDPQLSLEAA 942
                + I   G  + G+ DR+D+   G    + DYKTG  P+ E       + Q  L A 
Sbjct: 725  ASTPVTIPDTGFSIAGYIDRLDISGDGKRALVRDYKTGRPPRGEIRLNGGRELQRCLYAF 784

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
            A+KA     +            +           D +    + +  +    L      L 
Sbjct: 785  AVKALLGDDVA-----------ISASLLYPREPVDLQLDDPEAVLAEITGYLRAARMSL- 832

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028
                   +        +   +YD LA
Sbjct: 833  -------AGGAALPGPDTGGDYDDLA 851


>gi|3790598|gb|AAC68687.1| unknown [Rhodococcus erythropolis]
          Length = 323

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 77/308 (25%), Gaps = 24/308 (7%)

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                                +                         S S        P  
Sbjct: 8    PVSSPPAPTELSDQPHSLPGVSSVELPTPTPTGATSQERPRSRPALSPSRAGDYKQCPLL 67

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
               R + ++   P          RGT+ H  +  L         P+    + +       
Sbjct: 68   YRFRAVDRIPETPTR-----AQVRGTVVHAALEALFALPTGHRVPDRAAELVRPAWERVS 122

Query: 845  KENLPPH--IDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
             E+      I       F       +   +  +  +  +     +  +  +E  G+ L G
Sbjct: 123  AESPEAAELIPEDELDAFLGEVGKLVATYYTLEDPTRFDAEACEVYVETELE-NGVRLRG 181

Query: 901  FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
            F DRID+  +G V + DYKTG  P +E  +     Q+   A  L             A L
Sbjct: 182  FVDRIDVAPTGEVRVVDYKTGKAP-REFTESKALFQMKFYALVLLR-----TRGIVPAQL 235

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020
              I L     +    +  +    +       K       +L  G        +  +    
Sbjct: 236  RLIYLPSGSILTYAPDHDELIRFERTLSAIWK------AILAAGATG-DFRPKPGK-LCD 287

Query: 1021 QSEYDHLA 1028
              ++  L 
Sbjct: 288  WCDHKSLC 295


>gi|229592598|ref|YP_002874717.1| exonuclease V subunit [Pseudomonas fluorescens SBW25]
 gi|229364464|emb|CAY52291.1| exonuclease V subunit [Pseudomonas fluorescens SBW25]
          Length = 1149

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 98/981 (9%), Positives = 246/981 (25%), Gaps = 107/981 (10%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79
           L   +V   R  PL P  L +    V +    Q L+          ++ G        ++
Sbjct: 22  LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPEDDDMGGCGIAAAIDVQ 79

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             G  + + +   ++L  +  PP S + +     RL+ +    +     +      L+  
Sbjct: 80  LPGSFMWQLYR--MVLGRDEIPPKSLLDKAPLTWRLMRLLPELIDQPHFEPLQRF-LTHD 136

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN---EKYGMWWLLAADFLKIASKYWT 196
                   LA+ LAD+ D  +     W +  A                       ++ W 
Sbjct: 137 TDLRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRNGRGESKPLNLANCWQAELWR 196

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMSTVA 250
             L+++        +  + +   E +      P      +I+ G +         ++ +A
Sbjct: 197 ALLLDVGEEGMAESRAGVHQRFIERINTLEHAPPGLPSRVIVFGISSLPAQALEALAGLA 256

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTIT--------EKSTNITSSNTTYSTHPQYSLAKLLDF 302
                 + +     H  + I             +   +         T  Q++   L  +
Sbjct: 257 RFSQVLLCVHNPCRHHWSDIVADKDLLRNEYKRQARKSGMPVTIDPQTLHQHAHPLLAAW 316

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD---------------MRNTDILEN 347
               R+ +  L +  +    R+            S+                   +  E 
Sbjct: 317 GKQGRDYISLLDSYDDPNSYRAAFRDGRIDLFSDSEPTTLLNQLQDDILELRPLNETREL 376

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVK 403
                    + +    A + + E   +   L            +   ++  D +      
Sbjct: 377 WPAVDLDRDTSIRFHIAHSAQREVEILHDQLLQRFSADPALRPRDIIVMVPDVDSYAPHI 436

Query: 404 LEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +           I   ++             +  LL           I  L+  P  +
Sbjct: 437 RAVFGQLERNDPRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSRFPVSEILDLLDVPALR 496

Query: 457 FGFP--EKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPH 507
             F   E+ L      +E   +R   N+     L       ++     +        V  
Sbjct: 497 ERFAIKERDLPTLHRWIEGAGIRWGLNAEQRAGLGLPTELEQNSWRFGLRRMLLGYAVGT 556

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
             +    E  +    L   ++  +  L+    + +      +        +  L  +   
Sbjct: 557 GAACDGIEPYDEIGGLDAALIGPLVALLDALNDAHQALSQPAPPRVWGERLQRLMQLFFL 616

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
              +  +    +  +   +        G   +       +     +D   +  +    + 
Sbjct: 617 PSSEHDDYLLGQLEQLRETWLETCESVGLQDELPLTVVREAWLAGLDQGRLSQRFLAGA- 675

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
           +     +  R + F  + L G+N+G +P+      F           ++  +        
Sbjct: 676 VNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRPGDRSRREDDRYL-LL 734

Query: 688 FEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG------------------TDF 727
             + +    L  +   R   +N    AS  + +L                          
Sbjct: 735 EALLSARDQLYISWVGRSIRDNSDRPASVLIGQLRDHLASGWHHANSDEPLIDAMTQEHP 794

Query: 728 FDNLKKR----GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                 R    G     + R+     +       +       Q    S  +++  + +P 
Sbjct: 795 LQPFSARYFHEGDALFSYAREWQLLHEASDALPTEHDLAPHQQEEPLSLGQLQDFLRNPV 854

Query: 784 AVYARRILK-------LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
             +  + LK       +          D   R +L  ++++  + +  + +       ++
Sbjct: 855 KHFFSQRLKVFFEAAEVPLADEEPFVLDALQRYSLSDSLLSAALTQPDHLDQALNAQALR 914

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI---QSSIEKIFVNIPAKMAIES 893
                          +          +   + +            E +            
Sbjct: 915 LQGSGLLPMVGFGECLRNELIEPLPDLLRRYQQLLALWPTPHPGAEPVSFEH-------- 966

Query: 894 IGIHLTGFADRIDLLKSGFVD 914
            G+ L G+   +     G + 
Sbjct: 967 HGVQLEGWISGLHRRSDGGLL 987


>gi|254510735|ref|ZP_05122802.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium KLH11]
 gi|221534446|gb|EEE37434.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium KLH11]
          Length = 837

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 83/711 (11%), Positives = 185/711 (26%), Gaps = 101/711 (14%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E++     + G+ +  +P + +   +                  V  
Sbjct: 77  EILAVTFTNKAAREMKERVGRMLGRPAEGMPWLGTFHAIC-----------------VKL 119

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D  K L  +  L+   +  +  W A+ LA IID  +     
Sbjct: 120 LRRHAELVGLKSNFTILDTDDQKRLLKQ--LTQAANIDDKRWPARMLAGIIDDWKNRALT 177

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            + + A     +                 +  RL ELNA       + ++     H    
Sbjct: 178 PDKVPAADAGAFNHK-------GIELYAQYQTRLRELNAVDFGDLLLHMVTIFQTHGDVL 230

Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
            +       I++     +  A    +  +A        +   D       W      +  
Sbjct: 231 EQYQRWFRYILVDEYQDTNVAQYLWLRLLAGGHKNICCV--GDDDQSIYGWRGAEVGNIL 288

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +      P   + +L          +    NV      R                 
Sbjct: 289 RFEKDF-----PGAFVVRLEQNYRSTPHILAAASNVIRGNEKR----------------- 326

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------RMSLDENKKKSALIT 393
               L  ++   +K    V LI   +  EEA  I   +       R     N  + A++ 
Sbjct: 327 ----LGKELWTDRKEGEKVRLIGHWDGEEEARWIGEEIDAMQGGTRGVRPMNLDEMAILV 382

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              +  R  +      G+   +  G      +      +    +    D +A   +V  P
Sbjct: 383 RASHQMRAFEDRFLTIGLPYKVIGGPRFYERMEIRDAMAYFRLVVSPEDDLAFERIVNTP 442

Query: 454 LAKFGF---------PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
               G            ++         +V       +  +  L+ L+            
Sbjct: 443 KRGLGDKAQQTIQMTAREHGVSLVEGARIVVEEKLIGARGVNALRELIDGLARWNVVVGT 502

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                          A   V   L       +Y+ ++              +     ++ 
Sbjct: 503 RRTAPPSRRNAAPPSARKRVARPLGAEEYDASYRQHEYEGRTEYEDEVVEPIVEPFEESQ 562

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT---------RLIDG 615
             +           +E    +   ++          N  E ++ +            +  
Sbjct: 563 TSNYDHIELAQIVLDESGYTAHWQNEKTPEAPGRLENLKELVNQLDNFENLQGFLEHVSL 622

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
                +    + + I+    ++ L F  + L G  +G++P   + +         +  LK
Sbjct: 623 VMDNEQDGDGAKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMD---------ESGLK 673

Query: 676 TAEKYIGQAAHDFEMANGTRHL-IYTRSLRENN----IPTIASRWLQRLLV 721
             E+    A   +        +   + +           ++ SR++  L  
Sbjct: 674 GLEEERRLA---YVGITRAEEVCTISFAANRRVFGQWQNSMPSRFIDELPE 721


>gi|160934431|ref|ZP_02081818.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753]
 gi|156867104|gb|EDO60476.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753]
          Length = 1179

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 91/872 (10%), Positives = 217/872 (24%), Gaps = 106/872 (12%)

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
            LA +      EEK  +D+  L        +     F +   +   ++ +           
Sbjct: 314  LASLFQE--DEEKCRQDIRRLVPV-VSELFGAVKRFSRRLDEKKQQKRLADFGDLEHWAL 370

Query: 212  IALMRAEAEHLMK--------GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
              L+R   E   +         +   +++     +  A   +   ++       +    D
Sbjct: 371  RLLVRQTEEGWRRTEDARLLAESFDEVMVDEYQDTNEAQDMIFRAISREEKN--LFMVGD 428

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +     +      ++       +   +  ++       + +    V++ +   
Sbjct: 429  VKQSIYRFRQAMPEIFLRRKASYPDYDPEKNEYSAKVNL----DRNFRSRHGVTDGVNFV 484

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE----EAISIAIALR 379
               +    +                 P  ++  +++ ++      +    EA  I   + 
Sbjct: 485  FRQLMSVEMGEMEYTGEEELTPGASYPEREEADTELHILTLPKGADMDTLEAEYIGSLIA 544

Query: 380  MSLDE--------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
              +                 +    LI            +L   GI            T 
Sbjct: 545  SMVRNGELVQDGGKQRPAAYRDFCVLIRNANAHGGVYAAKLREMGIPAWSDTAGTFFGTP 604

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG------- 478
              S+  S L  +      + + +++  P+  F   +    R     +             
Sbjct: 605  EVSVALSYLRVLDNPVQDIPLLSVLISPIWGFTPDDLAQIRMARKGDAFYFALKDAAERP 664

Query: 479  ---NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                   +  ++         AT   +  +              A+   D  L  +  L+
Sbjct: 665  DVLGARCHRFLEHTEAFRRLAATLPADRLIQRLYEATGYPAVAQAMRQGDLRLNNLRLLM 724

Query: 536  TYKTNKNSTCGN------LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             Y  +   +           I    +          L E   +  +    + K L     
Sbjct: 725  KYARDYEGSGYQGLSGFIRFIDRLQEQDSDLAPAAALSESANVVRVMSIHKSKGLEFPIC 784

Query: 590  KIIETGSCIKANAIEWIDI----ITRLIDGETVKPKIEKSST----LFILGTLESRLLNF 641
             +  T         + +      +   +  ET+  + +        L I     S  L  
Sbjct: 785  ILANTARQFNKRREDILLHPALGLGMKLRDETMTVQYDTMPREAVSLEIERGGMSEELRV 844

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
              + +    E +    +  +          L  +  +     + +    A      I + 
Sbjct: 845  LYVAMTRAKEKLVMLTSLDD---PVKTLGKLGAQLTD-SKAISPYVVRSAGSFSDWILSC 900

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR----P 757
            +LR        S    R              +  +  L+  R+   T      KR     
Sbjct: 901  ALRH------PSGGGLREKAGVLPGVMLTEGENWKILLNPVREQQETVSGETEKRRQIQA 954

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYA----------RRILKLDFIPHFKKDPDRTD 807
             P      Q R       + L + P  V A                       +     +
Sbjct: 955  DPELTALLQKRFSFVYPGEALKSVPAKVAASELAGKENAKEYAAMSRPAFLTGQTMTPAE 1014

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
            RGT  H  +     +   ++  +    + +               + +      +   S 
Sbjct: 1015 RGTALHLYMQFADYRLAKQDPEKQLRFLLEKG------FLTQEQAEAVSLKKIERFFQSG 1068

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIES-------------IGIHLTGFADRIDLLKSGFVD 914
            L    +   ++ +    I   + + +               + L G  D +   ++G + 
Sbjct: 1069 LYRRMEQSENLRR---EIRFTVELAASEVNPGLTGQNGREPVVLQGAVDCVFE-ENGGLI 1124

Query: 915  ITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            + DYKT    +++  +     QLSL A AL+ 
Sbjct: 1125 LVDYKTDYVKEEQELKNRYCRQLSLYALALEQ 1156


>gi|309973556|gb|ADO96757.1| Exodeoxyribonuclease V, gamma chain [Haemophilus influenzae R2846]
          Length = 1121

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 119/984 (12%), Positives = 249/984 (25%), Gaps = 144/984 (14%)

Query: 39  LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94
           L P        I V +   +Q L+ E  + TG  + +   +P        + +   A  L
Sbjct: 24  LPPEDPFQQDIILVQSPNMLQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
            +  L  P      +  L RLI I+  K  +    L      S          L+  +AD
Sbjct: 78  PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135

Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + D       +W             + +   +       +       K   + W   +V+
Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNNTLFAQIQGNTKWQGELWRALVVD 195

Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                  A+         +   A+    K     I I G      A   ++  +++  + 
Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297
            +            I +   +   +            Q   +                  
Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315

Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                          +                 Y  +                    LEN
Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIKSNSLLGQLQSQILHLEN 375

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
           K  NI K    + L    +   E   +   L    +++     K   ++ AD N      
Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPNLTPKDVVVMVADINQYTPYI 435

Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             +          I   +S        +  S   +LL           +  L+  P  + 
Sbjct: 436 QAVFGQKNGGAPQIPFSLSDNKLSENDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495

Query: 458 GFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            F           E                G   +     L+ ++L     ++       
Sbjct: 496 RFNISLADLPLVREWVADSGIRVGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                S   K      + H    ++ L       +      SI  W ++    L +  + 
Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQAH------SIEKWQEILTALLSDFFVR 609

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624
                  +++ +         +++ E    +        ++I  +I     +        
Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTLHFTEKLQAEVIADVITMKLEDAPNSLKFL 663

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           +  +     L  R + F  + L G+N+  +P+    N F           +         
Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722

Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNL---------- 731
               E     R     +   R   +N P   S  + +LL        +N+          
Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQKENVLTVIEHPMTA 781

Query: 732 -------------KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                        +     +L    + D       +       P + +        +   
Sbjct: 782 FSPDNFKYNEKFTRSFATKWLPIA-QFDTAASNSEFAVTMTENPEKIEEVEL--DSLVSF 838

Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMK 836
           + +P   +  + L + F    ++  D                   ++      ++ +L +
Sbjct: 839 VENPVKFFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYSLNNDLIYLDE 887

Query: 837 QIIDSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-- 892
           Q    +F +  +   +            I  + LE +EKI    E    +I   +A++  
Sbjct: 888 QNFADYFRQAEVKGVLPRAEFGKVYAENIRDNVLEFKEKIADLGEPKQASIDFNIAVDWQ 947

Query: 893 --SIGIHLTGFADRIDLLKSGFVD 914
             +  I L G+ D +    S  + 
Sbjct: 948 NENQKIRLFGYMDALFGDDSQVIH 971


>gi|294635089|ref|ZP_06713601.1| exodeoxyribonuclease V, gamma subunit [Edwardsiella tarda ATCC
           23685]
 gi|291091511|gb|EFE24072.1| exodeoxyribonuclease V, gamma subunit [Edwardsiella tarda ATCC
           23685]
          Length = 1127

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 90/799 (11%), Positives = 195/799 (24%), Gaps = 96/799 (12%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
               +++ AL+ G  ++N               I V +    Q L+ E     G  + I 
Sbjct: 11  DVLTQLMAALMQGQPLDN---------PFEREVILVQSPGMAQWLQMELARSFGIAANID 61

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
                L           +L         S      +L  L+  +  +     +       
Sbjct: 62  ---FPLPATFIWDLFTRVLPDIPQRSAFSKDAMTWKLMWLLPQFLTR----PEFAPLAHY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKK----WEDLHALKNEKYGMWWLLAADFLKIA 191
           LS          LA  +AD+ D       +    WE    + +      W        +A
Sbjct: 115 LSDDADRRKQFQLAARIADLYDQYLVYRPEWLQRWEQGTLIDDLDSAQLWQAPLW---VA 171

Query: 192 SKYWTERLVELNASSP-VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
            + +TERL +       +  +      +A+    G    + I G +   P     +  + 
Sbjct: 172 LRDYTERLGQPQWHRANLYQRFIQALQQADQPPAGLPRRVFICGISALPPVYLEALRALG 231

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT----------------------- 287
            H +  ++      +    I +                                      
Sbjct: 232 EHIDVHLMFTNPCRYYWGDIQDYAFLARLQSRRRRDYLLAQRTLGESHSTLFRTPEQASA 291

Query: 288 --YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR--------------SMVISKSF 331
                  Q     LL        D   L                           + +  
Sbjct: 292 LFGEDGEQQLSNPLLASWGKLGRDHMYLLAQHGPQEVSAFVDLDQDTLLQRIQRDMLELE 351

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----K 387
                +D   T    ++   +      +++    + + E   +   L      +     +
Sbjct: 352 DHACIADSPQTLQDSSRKRLLAPDDRSISVHVCHSPQREVEVLHDCLLDMFAADPTLSAR 411

Query: 388 KSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              ++ AD +        +         +   IS               +LL+       
Sbjct: 412 DVIVMVADIDSYTPFIQAVFGNAPAARYLPFAISDRSARQLHPVVQATLALLDLPNSRFT 471

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +  L++ P     F        +     V   G +   D   +++L L         
Sbjct: 472 AEQVLALLEVPALAARFA-IDEEGIRLLRHWVEDSGIRWGLDDEAVRALALPATGQHTWQ 530

Query: 503 THVPHWQSRLSEEDK-----------ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
             +       + + +           E +  + + +      L   +  +       +++
Sbjct: 531 FGLTRMLLGYAMDSRCGDWQGVLPYDESSGSVAELVGHLAQFLAALRDWRQRLGQMQTLA 590

Query: 552 DWTKLTVTCLQNV---CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            W  L    L        D       +  +        L S   ET             +
Sbjct: 591 QWQPLCRELLDTFFLTDADSEAVCALIEQQWLQLLTDGLTSNYAETLPIALLRDELAARL 650

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            T+ I    +      +  +     +  R + F  + L G+N+GV+P+  A   F     
Sbjct: 651 DTQRISQRFL------AGPINFCTLMPMRSIPFKVVCLLGMNDGVYPRTLAPLGFDLMAG 704

Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD 726
           +     ++             + +  + L  +   R   +N     S  +  LL      
Sbjct: 705 KVQRGDRSRRDDDRYL-FLEALLSAQQRLYISYIGRSVQDNTARYPSVLVSELLEYIAQS 763

Query: 727 FFDNLKKRGQCYLDWTRKL 745
                 ++        R +
Sbjct: 764 HCLAADRQRDVDSSAARVM 782


>gi|313500581|gb|ADR61947.1| RecC [Pseudomonas putida BIRD-1]
          Length = 1160

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 111/986 (11%), Positives = 255/986 (25%), Gaps = 108/986 (10%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79
           L   +V   R  PL P  L +    V +    Q L+          +  G        ++
Sbjct: 22  LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPLEDDQGGCGIAAAIDVQ 79

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             G  + + + + L  S    P VS + +     RL+ +    +     +      L+  
Sbjct: 80  LPGSFMWQLYRSVLGRSE--IPEVSLLDKAPLTWRLMRLLPALIERPHFEPLRRF-LTDD 136

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL-----KIASKY 194
                   LA+ LAD+ D  +     W  L      ++ +        +     +  ++ 
Sbjct: 137 SDLRKRYQLAERLADLFDQYQVYRADW--LKDWATGEHAINTARGERKVLPPGNRWQAEL 194

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMST 248
           W   L ++        +  + +   E +    + P      +I+ G +         ++ 
Sbjct: 195 WRALLEDVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPPRVIVFGISSLPAQALEALAG 254

Query: 249 VANHPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
           ++      + +     H    I             ++            T  Q++   L 
Sbjct: 255 LSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQTLHQHAHPLLA 314

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSF---------------LPPDTSDMRNTDIL 345
            +    R+ +  L +  +    + +                                +  
Sbjct: 315 AWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSDGSPTTLLNELQDDILELRPLAESR 374

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARR 401
           E   P        +    A + + E   +   L            +   ++  D +    
Sbjct: 375 ERWPPVDTTKDRSIRFHIAHSPQREVEILHDQLLARFSADPTLRPRDVIVMLPDIDTYAP 434

Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP- 453
               +           I   ++             L  LL           +  L+  P 
Sbjct: 435 HIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSRFAVSEVLDLLDVPA 494

Query: 454 -LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHV 505
             A+FG  E  L      +E   +R   ++     L       ++     +        V
Sbjct: 495 VRARFGIRENDLPTLHRWIEGAGIRWGLDAEQRASLGLPAGLEQNSWRFGLRRMLLGYAV 554

Query: 506 PHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
              ++    E  +    L    I   +  L   +    +     ++S W +     L   
Sbjct: 555 GVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVACQALSEPATVSQWGERLHALLHVF 614

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
            L E      L  +       S        G           +     +D   +  +   
Sbjct: 615 FLAEDEGDEFLLMQ-LQDLRDSWLEVCETVGLHDPLPLTVVREAWLSGLDQGKLSQRFLA 673

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
             ++     +  R + F  + L G+N+G +P+      F           ++  +     
Sbjct: 674 G-SVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQPPLDFDLMASDYRPGDRSRREDDRYL 732

Query: 685 AHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                + +    L  +   R   +N    AS  + +L       +     ++GQ      
Sbjct: 733 -LLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHIAAGWHLADAQQGQPAKPGE 791

Query: 743 RKLDYTTKQPHY-------------------------------KRPKPFPPLEAQPRTYS 771
           + L   T++                                  ++ +P  P        S
Sbjct: 792 QLLHALTQEHPLQPFSPRYFQKGSPLFSYAHEWQVLHQQGEADEQSEPGLPPYQDAEALS 851

Query: 772 FSEIKQLINDPYAVYARRILKL--DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             ++   +  P   +  + LK+  + +     D +     TL     +E +         
Sbjct: 852 LHQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDTLQRYGASESLLGAALAEPD 911

Query: 830 EINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                ++           LP      + ++   +     L+  +++        V     
Sbjct: 912 NAEQALRAQARRLQACGLLPLAGFGELLQNELIEPLPDLLQRHQQLLQRW-PQLVEGALP 970

Query: 889 MAIESIGIHLTGFADRIDLLKSGFVD 914
           +  E     L G+  R+   +   + 
Sbjct: 971 VHFEHGQHRLEGWLGRVFQAEDQSLL 996


>gi|71906108|ref|YP_283695.1| UvrD/REP helicase [Dechloromonas aromatica RCB]
 gi|71845729|gb|AAZ45225.1| UvrD/REP helicase [Dechloromonas aromatica RCB]
          Length = 1134

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 76/814 (9%), Positives = 179/814 (21%), Gaps = 63/814 (7%)

Query: 151  NLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAA---DFLKIASKYWTERLVELNASS 206
             L   +  ++  E     L  L   +     W         L++A+        E     
Sbjct: 320  ELLGDLRSVDGLEAALAMLVKLPQPELSEAEWATVECFSRLLRLAAGQLWLAFQEAGEVD 379

Query: 207  PVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP---NG 255
             +        A             +      +++     + P+   L+  +       +G
Sbjct: 380  FIEIAARAGLALGDDDAPTDLAQALDYRIRHLLVDEFQDTSPSQVGLIEKLTRGWMPDDG 439

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY--STHPQYSLAKLLDFLDIKREDVKRL 313
              +    D       +                                +  I        
Sbjct: 440  RTLFVVGDPMQSIYRFRKADVGLFLRVRERGIGDIRLGHLRLFRNNRSYPGIVDWVNAAF 499

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
             ++             S          +      +  +       +     D   EEA  
Sbjct: 500  PSIFPA--------EDSPEAGAVRYAESAATRSPRADSGVVVHPVIEHEGGDAAGEEARR 551

Query: 374  IAIALRMSLDENK-KKSALITADRNLARRVKLELTRFGINIDISAGI--PLSTTLHSSIL 430
            +   +R +      ++ A++   R+    +  E+ R    +   A     L    H   L
Sbjct: 552  VLTIIREARRAAPAERIAVLVRARSHLDALVSEIRRSAPELRFQAVDIEGLDGRQHVQDL 611

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             +L  A+    D +    L++ P       + +   A         +         + + 
Sbjct: 612  LTLFRALHHRADRVHWLALLRAPWCGLKLADLHALAA------DDKKSTIWQLMQDEARL 665

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
              L     Q+    +       +  D++     ++ +   +           +     + 
Sbjct: 666  ARLSDDGQQRLRHVLGVLHQAFAGRDRQHPRRWLEGVWLMLGGPRCL-EAPEALNDVEAF 724

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
                   V                L+         +    + +    +  +  + ++  T
Sbjct: 725  FALVDKLVASRTLSAETLAAHAAELY---------APSDPLGDAVQMMTVHKSKGLEFDT 775

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
             ++ G   +     SS L       +       +           + TA +       + 
Sbjct: 776  VILPGLHRETGGNDSSLLLWDEVAGADGDEHLLVAPIKQKGAGNGEPTAYDYLKKLEAER 835

Query: 671  DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
                  A +           A    HL+            + S                 
Sbjct: 836  A-----AHEDERLLYVAATRAIRRLHLLGIAVADAKKEEGLKSP---------ANGTLLK 881

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
            L   G    ++   L         +                   +   +  P     R  
Sbjct: 882  LLWPGVAQREFLAALTEGESGEPARASIDPATFVPPLVRLREVHVPPALRSPAEG-VRPA 940

Query: 791  LKLDFIPHFKKDPD-RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
                 +   +         GTL H  +  + K  +   + +    ++ +     + +   
Sbjct: 941  DNPVDLDTPESTLSLEASVGTLVHRCLELIAKNGLPAWSDKRISGLQPVYQRWLQAQGHS 1000

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909
                            S L  +       +          +     + +    DR+ +  
Sbjct: 1001 EADAESGAGEVVAALVSTLASDTGRWLLTDHPQSAAEQAWSSTDGSLTVNHVIDRVFV-A 1059

Query: 910  SGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEA 941
                 I DYKT   P  E     +   PQL   A
Sbjct: 1060 DACRWIIDYKTVRLPDAELPQRAESYRPQLERYA 1093


>gi|254463307|ref|ZP_05076723.1| double-strand break repair helicase AddA [Rhodobacterales bacterium
            HTCC2083]
 gi|206679896|gb|EDZ44383.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium
            HTCC2083]
          Length = 1122

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/806 (8%), Positives = 197/806 (24%), Gaps = 107/806 (13%)

Query: 186  DFLKIASKYWTERLVELNASSPVGY----QIALMRAEAEHL----MKGTKGPIIIAGSTG 237
             F       +                   +  L  +E        + G    I++  +  
Sbjct: 332  RFAAAFLTRYEASKQARGWLDFDDLILKTRDLLANSEMAQWVLYKLDGGIDHILVDEAQD 391

Query: 238  SIPATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT-- 286
            + P    ++  +         A       +    D       +     +  +   S    
Sbjct: 392  TSPTQWDVIERLTSEITAGDGARGEVPRTIFVVGDKKQSIYSFQGADPREFDRMRSEFDV 451

Query: 287  ----------TYSTHPQYSLAKLLDFL--DIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
                          H  +  ++ +  L   +  +      + SN +        +  + P
Sbjct: 452  RLRPTNSPLVPAELHYSFRSSQCILELVDKVFEDHPTAGFSGSNHLAFEGGPPGRVDIWP 511

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-------- 386
                    D  +      +   +D  ++ A    +E   +   +  +L +          
Sbjct: 512  AIPKAEKLDGGDWSDTVDKLGENDETVLMAHRIADEIARMTGPMGEALFDKGIFRKVRAG 571

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+    +L   +       G+ I  +  + +   +    L +LL+ +    D  ++
Sbjct: 572  DVLILVQRRSDLFEEIIRACKTKGLPIAGADRLKVGAEMAVRDLQALLSFLATPEDDYSL 631

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A ++K PL  +     +      +   +            D+  ++ D +  Q +     
Sbjct: 632  AVVLKSPLFGWSEKRLFDLAHDRSGRFLWQELRSRKNMHSDVLHILED-LRKQADFLRPY 690

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                R+          +     +    +        S   +                   
Sbjct: 691  DLIERVLTRHNGRRHFVGRLGREAEDGIDALLAQALSFERSR------------------ 732

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                     W E +  T+    S+  +    +  +  + ++    ++     +      S
Sbjct: 733  IPSLTGFLTWMESDDLTIKRQLSQDRDEIRVMTVHGAKGLEAPIVIMPETQKRKSPGGGS 792

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             + +   +   + N D                        ++++    +   +   +   
Sbjct: 793  LIKMDDLVGWSVRNED---------------------APDIIKTAKAQREERQAEERMRL 831

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY---LDWTR 743
             +         +   +  +       S +             +     G+          
Sbjct: 832  LYVAMTRAEKWLILGAAGDLGKTDDESWYGLVSAAARERPHVEYDFAFGKGLRIEPVPWG 891

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
             ++ T KQ    +     PL  +  + +      +             K         + 
Sbjct: 892  DVEETPKQAPLAQSIELDPLFREAISITVPSETTISPSNLG-----GAKALPSETGLDEE 946

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
                RGT  H ++    +  ++K       L+              P+++ +        
Sbjct: 947  AAKMRGTQVHLLLEHFSQTPVDKWDTIAEALLPDT-----------PYLNDLIVE----- 990

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH-LTGFADRIDLLKSGFVDITDYKTGD 922
            +   +                +P    + ++    + G  DR+ ++    V   D+KT  
Sbjct: 991  ATKVITAPNLSFIFDHGTMSEVPITATLPNLSNKPIHGIIDRL-IVNDTDVWAIDFKTNT 1049

Query: 923  NPKKETA--QKLIDPQLSLEAAALKA 946
                      + +  Q+    +AL+ 
Sbjct: 1050 AVPAGAGLCPEGLLRQMGAYRSALRQ 1075


>gi|188534873|ref|YP_001908670.1| exonuclease V subunit gamma [Erwinia tasmaniensis Et1/99]
 gi|188029915|emb|CAO97799.1| Exodeoxyribonuclease V gamma chain [Erwinia tasmaniensis Et1/99]
          Length = 1128

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 98/953 (10%), Positives = 231/953 (24%), Gaps = 120/953 (12%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
             L S  + V +    Q L+    E  G  +          ++      + +   +    
Sbjct: 28  DPLRSEVVLVQSPGMAQWLQMSLAEEFGIAA----------NIDFPLPASFIWDMFVRVL 77

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYP---ESPLSLPISPANAIWLAKNLADIIDI 158
           P    +     + +       LPD++           LS          LA  +AD+ D 
Sbjct: 78  PEIPKESAFNKSSMSWKLMAILPDMLPGEAFTPLRHYLSDDDDKRKLFQLASRVADLFDQ 137

Query: 159 IETEEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217
                 +W +               L    L  A   +T RL +             +  
Sbjct: 138 YLVYRPQWLNGWEKGQLADGLGDAQLWQAPLWAALVEYTRRLEQPGW-HRANLYQRFIAL 196

Query: 218 EAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW---- 271
                 +       + I G +   P   + +  +  H +  ++      H    I     
Sbjct: 197 LENSSTRPENLPDRVFICGISALPPVYLQALRALGKHIDIHLLFTNPCRHYWGDIQDYGF 256

Query: 272 ---------------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                            I +      +S+       Q     LL        D   L   
Sbjct: 257 LARLQSRHRRHYQDNRQIPQFRDADNASSLFNDAGEQQLSNPLLASWGKLGRDNLYLLAQ 316

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN--------------IQKCFSDVALI 362
                  + V  +      T      ++ ++ +                +      +A+ 
Sbjct: 317 MEPNEVFAFVDIEPTDLLQTLKRDLLELEDHAVIGLKTSEWENSRSKRILAAEDRSIAIH 376

Query: 363 EADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFGINI 413
           +  + + E   +   L   + ++     +   ++ AD +        +         +  
Sbjct: 377 QCHSPQREVEVLQDRLLAMMADDPTLTARDIIVMVADIDAYTPFIQAVFGNAPADRALPF 436

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNAL 471
            IS               SLL           +  L++ P    +F   E+ L   +  +
Sbjct: 437 AISDRRASQAHPVLQAFISLLGLPDSRFTAEDVLALLEVPAVASRFAIDEEGLRLLRYWV 496

Query: 472 ELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
               +R   +   + DL        +                           + +  L+
Sbjct: 497 AESGIRWGLDDDGVRDLDLPATGQHTWHFGLTRMLLGYAMNSEAGDWQGILPFDESSGLI 556

Query: 525 DHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
             +   +  L+      +        + +W  L    L +  + +      L   E  + 
Sbjct: 557 AELAGNLAELLMQLNRWQRWLSEPRELQNWLPLCRQMLDDFFISDADTEAALTLIE--EQ 614

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
              + S  ++             D ++  +D + +  +      +     +  R + F  
Sbjct: 615 WQQVISYGVQASYQQAVPLTLLRDELSSRLDQQRISQRFLAGP-INFCTLMPMRSIPFKV 673

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
           + L G+N+GV+P+      F     Q     ++             + +  + L  +   
Sbjct: 674 VCLLGMNDGVYPRTLPPLGFDLMSQQMQKGDRSRRDDDRYL-FLEALNSAQQQLYISYIA 732

Query: 704 RE--NNIPTIASRWLQRLLVL------------------------GGTDFFDNLKKRGQC 737
           R   +N     S  +  L+                                  +    + 
Sbjct: 733 RSIQDNTERYPSVLVSELVEYISQSFCLADDSGSDVDSSAKAVVKHLHHLHSRMPFAAEN 792

Query: 738 YLDWTRKLDYTTKQPHYK--RPKPFPPLEAQPRTYSFSEIK-----QLINDPYAVYARRI 790
           +        +  +       +    PP        S + I      +    P   +    
Sbjct: 793 FSASAEFRSFAAEWLPAASGQGTAHPPFMRALPEESETVIAFDKLIRFWRHPVRAFFSLR 852

Query: 791 LKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
           L + F       PD       G   + + + L+   I+    +                 
Sbjct: 853 LGVSFQLEETGLPDAEPFSLDGLSRYQVNSLLLNSLIDGKEGDQL-----YARQRAAGVL 907

Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
                  ++                + +++ E        ++++      L+G
Sbjct: 908 PYGAFGELFWLEQESEMRELAGRVREQRAAAE------SWEISLTLGETTLSG 954


>gi|145628124|ref|ZP_01783925.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae 22.1-21]
 gi|144979899|gb|EDJ89558.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae 22.1-21]
          Length = 965

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 104/867 (11%), Positives = 217/867 (25%), Gaps = 119/867 (13%)

Query: 39  LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94
           L P        I V +    Q L+ E  + TG  + +   +P        + +   A  L
Sbjct: 24  LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
            +  L  P      +  L RLI I+  K  +    L      S          L+  +AD
Sbjct: 78  PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135

Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + D       +W               +   +       +       K   + W   +V+
Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITAQIQKQQPNLNATLFAQIQGNTKWQGELWRALVVD 195

Query: 202 L-----NASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
           +     +A+         +   A+    K     I I G      A   ++  +++  + 
Sbjct: 196 VKSDVGDATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNT--TYSTHP--------------------- 292
            +            I +   +   +             P                     
Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQDEDQPLFSEDQLSQLENAQFDVTYQK 315

Query: 293 ---QYSLAKLLDFLDIKREDVKRLGNVSNEMY--GRSMVISKSFLPPDTSDMRNTDILEN 347
              Q     L  +  + R+ +  L      +     +                    LEN
Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
           K  NI K    + L    +   E   +   L    +++     K   ++ AD N      
Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSPTPKDVVVMVADINQYTPYI 435

Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             +          I   +S      + +  S   +LL           +  L+  P  + 
Sbjct: 436 QAVFGQKNGDAPQIPFSLSDNKLSESDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495

Query: 458 GFPEKYLSRAKNALE----------LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            F                            G   +     L+ ++L     ++       
Sbjct: 496 RFNISLADLPLVREWVTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                S   K      + H    ++ L       +      SI  W ++    L +  + 
Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQSH------SIEKWQEILTALLSDFFVR 609

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624
                  +++ +         +++ E    I  N     ++I  +I     +        
Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTIHFNEELQAEVIADVITMKLEDAPNSLKFL 663

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           +  +     L  R + F  + L G+N+  +P+    N F           +         
Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722

Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---- 737
               E     R     +   R   +N     S  + +LL        +N+    +     
Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQAKEPSVLVSQLLDYINQGQKENVLTVIEHPMTA 781

Query: 738 ----------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                              W     + T   + +          +        +   + +
Sbjct: 782 FSPDNFKNNEKFTRSFATKWLPIAQFDTAASNSEFAVTMTENPEKIEEVEVDSLVSFVEN 841

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDR 808
           P   +  + L + F    ++  D  + 
Sbjct: 842 PVKFFFEKQLGVYFRDKDERIADSENF 868


>gi|83859061|ref|ZP_00952582.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83852508|gb|EAP90361.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 1219

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 85/935 (9%), Positives = 203/935 (21%), Gaps = 115/935 (12%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD-IIDIIETEEKKWEDLHALK 173
            L+ ++ ++  +I +      P     +       A  +AD +++  +        L+ L+
Sbjct: 325  LVTLFGDEGAEIHRVGDEVLPKLAAATANRMTRAALRIADALLNDYQ------ARLNRLR 378

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
               +      A   L  +                V    A   A  +  +         A
Sbjct: 379  RVDFSDLVERARALLTDSEARGWALYKLDQGLDHVLVDEAQDTAPEQWAVINALTEEFFA 438

Query: 234  G----STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            G     T    A  R +  V +           D     A    +  ++        +  
Sbjct: 439  GDGAYETSHPDALRRTVFCVGDEKQSIYSFQNADPREFLAQRQRLQTEAKLARLRFESPP 498

Query: 290  THPQYSL-----------------------AKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
             +  +                           L++ L+ K          + +       
Sbjct: 499  LNVSFRSSPEVLAAVDACFAAEAAVLNTERKDLVEGLETKLLMSDPETQQTRDPLAFHRY 558

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN----EREEAISIAIAL---- 378
                    +            K    Q+   D+  ++A+       + A ++A  +    
Sbjct: 559  DGHVAARVNAPGCVEIWPAVPKPEGGQEDELDLRPVDAERKDSARNQLAEAVASEIADII 618

Query: 379  -------------RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
                         R+          L+     L   +   L    + +  +  + L   L
Sbjct: 619  TRGDGVWEEGKPWRLRPAHAGDILVLVRRRGGLFEEIIRRLKLKNVPVAGADRMTLPDQL 678

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                L SL        D +++A ++K P                  +L    G +    +
Sbjct: 679  VVEDLLSLARFALLPEDDLSLAEVLKSPFFHPVRAVTPPIDDDALFDLSRQPGARLWDKL 738

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
                                                         +  L      +    
Sbjct: 739  RRSDDPRFRDARAALETARARVETDAPYAFFARFLTETSPTGESRLARLYARLGEEARDP 798

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
                ++      V    ++             + +   +             +  +  + 
Sbjct: 799  AEEFLNRALAHEVEGAPSLSRFVAAM------QADAVQIKREMEAGRGEVRVMTVHGAKG 852

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            ++     +   T  P+                            +E      +       
Sbjct: 853  LEAPIVFLPDTTQLPRDRSGG--------------------LFAHEEAGLLWSPDMKMPP 892

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR-------------SLRENNIPTIA 712
             ++ S    K  +         +      R  +                S  +    +  
Sbjct: 893  PLLASIAERKELDADGEYQRLLYVAMTRARDRLIVCGHTHGVAGKVDAGSWHDRCQHSWT 952

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
                + +         +N  +                       P   P    QP     
Sbjct: 953  GADWRPVKTALEGVAAENGWEAAPGLRYGADPKPLKASAAPEAAPVTLPGWAIQPPPADP 1012

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT-DRGTLFHNIITELIKKRINKNTPEI 831
            + ++ +             +   +    K       RG L H ++  L     ++     
Sbjct: 1013 APVRSVAPSKLLGEEESGFEPASLSPLAKGGQSRFRRGELIHKLLQTLPDIEESRREASA 1072

Query: 832  NHLMKQI--IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
               ++    +D    +E     + +I    F  +           Q              
Sbjct: 1073 LRYLENQTDLDDAQRREIASETLRVISDPTFAALF----------QPGSRAEAAVAGQAA 1122

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAG 947
             +   G+ + G  DR+ +     V I DYKT   P ++     +    Q++   A L+  
Sbjct: 1123 GLPG-GMVINGQIDRLVVT-DHEVLIVDYKTNRPPPQKVEDVPRAYLAQMAAYRALLQGL 1180

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
                   + V       +  +             +
Sbjct: 1181 ----HPEKPVRCALLWTVAPRLMELPPERMDAVLN 1211


>gi|308513303|ref|NP_952584.2| exodeoxyribonuclease V subunit gamma [Geobacter sulfurreducens PCA]
 gi|41152673|gb|AAR34907.2| exodeoxyribonuclease V, gamma subunit [Geobacter sulfurreducens
           PCA]
 gi|298505647|gb|ADI84370.1| exodeoxyribonuclease V, gamma subunit [Geobacter sulfurreducens
           KN400]
          Length = 1064

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 88/919 (9%), Positives = 212/919 (23%), Gaps = 104/919 (11%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
           TI V ++   + L  E  +  G  +          +          L       P     
Sbjct: 34  TIVVQSRGMERWLAMELAKRLGIWANGS---YPFPNAFVWSLFRAALPHLPDQSPFDPA- 89

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
               L   I+    +L            L+          LA  +AD  D          
Sbjct: 90  ---ILTWRIMDLLPRLLPEPAFGQLRGYLAGEDRELRLYQLAARIADTFDQYTVFRGDLL 146

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT- 226
                  ++    W             W     +   +     + A ++  A   +    
Sbjct: 147 ATWETGRDQQ---WQARL---------WRALTADSPGTHRGAVRDAFLKQLAGGRLPAGV 194

Query: 227 -KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
               + + G +   P    + +++A      + +          I +             
Sbjct: 195 CPERVSVFGISYLPPFHLEIFTSLARLCPVNLFVLSPCREYWGDIVSPGARARMTPERRQ 254

Query: 286 TTYSTHP-QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                HP   SL K              L     ++Y  +   +      +     +   
Sbjct: 255 QAVEGHPLLASLGKPGRDFSSLILACDDLSGGERDLYADAPGETLLAAVQNGILTLDEAD 314

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLAR 400
              ++  +      + +        EA  +   L    ++      +   ++T D     
Sbjct: 315 GTPRLVRVDPGDRSIGIHSCHGPMREAEVLHDVLLAMFEDLPGLTPRDILVMTPDIETYA 374

Query: 401 RVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                +       R  I   I+     S    +    ++L+          +  +++   
Sbjct: 375 PYVAAVFGGGQDQRRRIPFSIADRSIRSAGGAADAFLAILDLPLGRFPATGVLDILETGA 434

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
               F     +  +     V     +   D  + ++  L           +      ++ 
Sbjct: 435 VHRRFG-IDEAGLEQIRSWVEATRIRWGMDENERRAAGLPAYRENSWQAGLDRLLLGVAM 493

Query: 515 EDKELA------------VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
            D+E A                  + + I  +   +  +       S+  WT      L 
Sbjct: 494 PDEEGAMFGGILPHDAMEGDGPVLLGRFIRFVEALERVRQDLARPRSLEGWTATLRGILA 553

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
           +    +               L  +   + E G+           +I   +     +P  
Sbjct: 554 DFFNPDDATAFER------AALGRIVDGLGELGAGSGFTDEVGRSVIRAWLGERLDRPDQ 607

Query: 623 EKS---STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                   +     L  R + F  + L G+N+  +     ++      + +         
Sbjct: 608 GLGFMTGGVTFCAMLPMRSIPFRVICLLGVNDDSF---PRRDRAAGFDLMAADRRPGDRS 664

Query: 680 YIGQAAHDF--EMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
              +  + F   + +    L+ + + +   +N     S  +   L   G+ F D   +  
Sbjct: 665 LREEDRYLFLEALLSARERLVISYTGQSVRDNAELPPSVLVSEFLDYLGSRFTDGTDRFP 724

Query: 736 QCY----------------------------LDWTRKLDYTTKQPHYKRP--KPFPPLEA 765
                                             +R+      +P  + P  +  P    
Sbjct: 725 ASLVTRHRLQPFSPAYFTGDGGLFSYAAEECRALSRRGRDDAPRPFLEHPLAESGPASAD 784

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPH----FKKDPDRTDRGTLFHNIITELIK 821
           +      +++      P     R  L +           ++P   D    F      L  
Sbjct: 785 ETEILPLAQLISFFEHPVRYLMRHRLGIRLEESRSPLEDREPFALDSLDAFLLEQEILDH 844

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                +  ++  + +            P     +             +      +    +
Sbjct: 845 ILAGGDPADLLPVARARG------GLPPARQGELAFAGLTARVRDLADRVRPATNGQPPL 898

Query: 882 FVNIPAKMAIESIGIHLTG 900
               P  + +      L G
Sbjct: 899 E---PLTVDLRVGERRLVG 914


>gi|291483547|dbj|BAI84622.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp.
            natto BEST195]
          Length = 1232

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 121/1003 (12%), Positives = 257/1003 (25%), Gaps = 141/1003 (14%)

Query: 58   QELRSEFIEITGKKSTILPIIK-SLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARL 115
            + L  E  +  G  +   P     L D+ + ++          L   V  +      A  
Sbjct: 239  RAL--ELTKAPGGPA---PRADNFLDDLAQIDELIQHQDDFSELYKRVPAVSFKRAKAVK 293

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
               +   L D   DL   +     +      +  ++    +  +   +   E L  L   
Sbjct: 294  GDEFDPALLDEATDL--RNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPVIETLVQLVIS 351

Query: 176  KYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231
                +     +           Y    L   N             +EA    +     ++
Sbjct: 352  YGKRFEAAKQEKSIIDFSDLEHYCLAILTAEN--DKGER----EPSEAARFYQEQFHEVL 405

Query: 232  IAGSTGSIPATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            +     +      ++  V + P     +    D       +               T S 
Sbjct: 406  VDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESG 465

Query: 291  HPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                             D LD      K+L              ++  L     D   T+
Sbjct: 466  EGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGK-IGEVDYDEQAELKLGAAYPDNDETE 524

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---------------SLDENKKK 388
                 I N +   +     E +  + EA +IA  +R                  +   + 
Sbjct: 525  TELLLIDNAEDTDASEEAEELETVQFEAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRD 584

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
              ++      A ++  EL   GI +  +        +  ++  S+L  I      + +A+
Sbjct: 585  IVILLRSMPWAPQIMEELRAHGIPVYANLTSGYFEAVEVAVALSVLKVIDNPYQDIPLAS 644

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            +++ P+      E  L R +N                     L            H+  W
Sbjct: 645  VLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRNDELYQKLNTFYG---HLQKW 701

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
            ++          +  V    + +  +      K        + D  +   +         
Sbjct: 702  RAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRARQYESTAFRGLFRF 761

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK---- 624
             R +  +    +    +   S+  +    +  ++ + ++       G      +      
Sbjct: 762  LRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFAAGLGRNFNMMDLNKS 821

Query: 625  --------------SSTLFILGT--------------LESRLLNFDTLILGGLNEGVWPK 656
                             L I                 L S  L    + L    E ++  
Sbjct: 822  YLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVLYVALTRAKEKLFLI 881

Query: 657  NTAKNP------FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL---IYTRSLRENN 707
             + K+       + +   Q+D  L   ++Y  +   DF      RH             +
Sbjct: 882  GSCKDHQKQLAKWQASASQTDWLLPEFDRYQAKTYLDFIGPALARHRDLGDLAGVPAHAD 941

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-----------HYKR 756
            I    +R+  ++ +       D+L++R +   +    +      P               
Sbjct: 942  ISGHPARFAVQM-IHSYDLLDDDLEERMEEKSERLEAIRRGEPVPGSFAFDEKAREQLSW 1000

Query: 757  PKPFPPLEAQPRTYSFSEIKQLI--------NDPYAVYARRILKLDFIPHFKKDPDRTDR 808
              P   +       S SEIK+            P       IL        KK     ++
Sbjct: 1001 TYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKPADGSILYRRPAFMMKKGLTAAEK 1060

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            GT  H ++  +    +  +  E    + ++ +     E     ID        +I   F 
Sbjct: 1061 GTAMHTVMQHIPLSHV-PSIEEAEQTVHRLYEKELLTEEQKDAID------IEEIVQFFH 1113

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGFADRIDLLKSGFVDITD 917
                      +     IP  +A+               + + G  D +   + G + + D
Sbjct: 1114 TEIGGQLIGAKWKDREIPFSLALPAKEIYPDAQEADEPLLVQGIIDCLYETEDG-LYLLD 1172

Query: 918  YKT------------GDNPKKETAQKLIDPQLSLEAAALKAGS 948
            YK+            G  P  +      + Q+ L   A++  +
Sbjct: 1173 YKSDRIEGKFQHGFEGAAPILKKR---YETQIQLYTKAVEQIA 1212


>gi|95929583|ref|ZP_01312325.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
 gi|95134280|gb|EAT15937.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
          Length = 1101

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 91/914 (9%), Positives = 215/914 (23%), Gaps = 97/914 (10%)

Query: 57   IQELRSEFIEITGKKSTILP-----IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE 111
             Q L +   E   + +  +P      + +LG    E+   +     +L       +  LE
Sbjct: 218  QQALEAVLAEHLAEAARAVPLACRDEVMALGRFAAEQLADEQRPISHLLQAECFPEADLE 277

Query: 112  LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA---KNLADIIDIIETEEKK-WE 167
               +       L             ++          A   + + +++  +  E+ +   
Sbjct: 278  ALPVWRGLAELLLTSEGQWRKACNKNIGFPAGKKDPFASMKQRMLELLKRVSDEDCQALA 337

Query: 168  DLHALKNEKYGMWWLLAADFLKIASKYWTERL----VELNASSPVGYQIALMRAEAEHLM 223
             + +L +  Y        D L         +L                +   +A  +   
Sbjct: 338  QVVSLPSGGYSDQQWQTLDALLDVLPALVAQLWWVFRHCAEVDFTEVALKARQALVDSGQ 397

Query: 224  KGTK--------GPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWN 272
               +          I++     +      L+ST+       +G  +    D       + 
Sbjct: 398  PTEQLLALDRQIDHILVDEFQDTSWLQFDLLSTLVSGWQPDDGRTLFVVGDPMQSIYRFR 457

Query: 273  TITEKSTNITSSNTTYSTHPQ--YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                                Q     A       I         ++              
Sbjct: 458  EAEVGLFLQAGQQGIGPVSLQSLQLSANFRSQQGIVDAINGWFPDIFPAQEDAGR----- 512

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-KKS 389
                           +  +         V     +N  EEA  +   +++  D +  +  
Sbjct: 513  -------GAVCYFPAQPVLNRGMGEAVSVYPDYHNNPDEEAAEVVELIKVLRDRHPAESI 565

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            A++   R   + +   L +  I         L+     S LT+L  A+    D ++  T+
Sbjct: 566  AVLVRSRTHLKSILPHLQKHAIGYMAQDIDVLTQCPVVSDLTALTKALLHGGDDLSWLTV 625

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
            ++ P       E                          +  L                  
Sbjct: 626  LRAPWCGLTLDELIHFA---------------PSKTTTVAQLATTEAVLSALPPASQQRV 670

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
            + +     E         L+ +        +     G  ++ D  +     L  +     
Sbjct: 671  AAVIAIVVEYRRRRGRVPLRQLVESCWRDLDGPCYYGGQAVHD-VEPFWALLDRLDYGGD 729

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                    E   +  ++           +  +  + ++    ++     KP+      + 
Sbjct: 730  LLAIEQLDESLQQLFATPVVSGESAVQVMTIHKAKGLEFDHVVLPSLGRKPRRSDHPLMR 789

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
             L      LL       G + + ++                   L+  ++    A   + 
Sbjct: 790  WLEHPTHGLLMAPITAPGDVADPIYGLLGQ--------------LEQRKEDYEVARLLYV 835

Query: 690  MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
                 R  ++            A      LL         +        L    + D   
Sbjct: 836  ALTRARRTLHLFGQAALARDGQAQPASGSLLATLWPAIGHHFVPDDSQTLQGDSEQDARR 895

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
              P   R                        +P      +  + D +  ++     +  G
Sbjct: 896  YGPPLLRRA----------------------EPLYAVQPKRAEADGVTPWRSGTIASHVG 933

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            TL H+                       +I        L  H         +++  + L 
Sbjct: 934  TLVHHWFERFALDPQAIENYHQVEQRSALIGRQVRLLGLAEHHIEPMVGRINQLIDTMLS 993

Query: 870  HEEKIQ--SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
             +      +   +          ++   +++    DR  + ++    I DYKT   P + 
Sbjct: 994  SDRGRWILAPHPQGRNEYALSGELDGQFVNV--VIDRTFIHETERW-IIDYKT-SVPGRL 1049

Query: 928  TAQKLIDPQLSLEA 941
            + ++    Q  + A
Sbjct: 1050 SMEEFYQQQAEIYA 1063


>gi|315497132|ref|YP_004085936.1| double-strand break repair helicase adda [Asticcacaulis excentricus
            CB 48]
 gi|315415144|gb|ADU11785.1| double-strand break repair helicase AddA [Asticcacaulis excentricus
            CB 48]
          Length = 1168

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 81/823 (9%), Positives = 198/823 (24%), Gaps = 83/823 (10%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGS 235
                 +  S  + +      A           R  +   M         G    +++   
Sbjct: 332  TLQLFEDFSAIYQDLKRRTGALDFQDLISRAKRLLSGASMSQWVLFKMDGGLEHVLVDEG 391

Query: 236  TGSIPATARLMST------------VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
              +      ++              V        V    D       +            
Sbjct: 392  QDTSGDQWDIVKALTGDFFAGASAPVFQARIERTVFAVGDEKQSIYGFQGAKPDLFLGMR 451

Query: 284  S---NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM----------------YGRS 324
            +            + + +L+       + +  +    +                   GRS
Sbjct: 452  TYYQTLAKQAKKPFVVPQLVQSWRSLPQVLGFVDKAFDGPDLSEALNFTADPIIHDAGRS 511

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD- 383
               +   L P    +   D+ ++   N+    +          ++ A  IA  +R     
Sbjct: 512  ERSATVELWPPIYPLAVPDLDDSDDENVAPVDASGVAPAKRLAQQLAFHIAQDIRQGRSV 571

Query: 384  -----------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                              L+     L   +  EL + G+ +  +  + LS  +    L +
Sbjct: 572  ICKSSRKARPMHAGDVLILVRKRDALFEHIIRELKQAGVPVSGADRLKLSDHIAFQDLRA 631

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK--NALELVALRGNKNSYDIMDLKS 490
            L+    +  D +++A +++ PL      + +        +L     R  +++    + ++
Sbjct: 632  LMRVCLQAGDSLSLAAVLRSPLCDLSEDDLFTLTRVEKASLWQALNRLAEDNPRFSEAQN 691

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
             +   ++     T        L+  D          + +             +       
Sbjct: 692  FIGWALSEAPQRTAFDFLGLVLNRRDGAGRTQRQRFVTRLGVECEDVLDETLNLALKGEG 751

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW----- 605
                 L              K       +  + ++   SK +E    +   A  +     
Sbjct: 752  VGAIGLIDFLNLCEFNASEIKREQEEGGDRVRVMTVHGSKGLEAPWVVLPMAPGFKSTRN 811

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
             D++    DG+ +     +      +  L++     +      L      +   +     
Sbjct: 812  DDLLLTSDDGDLLLSARGRDGDPQAVSALKAVRSLREAKEGLRLFYVALTRARDRLTLCG 871

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
                   N    + Y   A   F+          T    +  +   A +   +       
Sbjct: 872  YRGSRAANGPFPDWYD-LAQDGFDRL---PREAVTAVELDTVVEFGAPK--DQESSEKAE 925

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                  +           +            P P P  +   R  S    +         
Sbjct: 926  LLLFGERAPLMSAEAQAAQTQTGLPAFVTAAPTPDPEADVVWRAVSQLSDEDRA------ 979

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                  +       ++   R  RG   H +   L    +          +K+       +
Sbjct: 980  ---DEDRAPSPLAEQRGQGRFGRGLKIHKLFEILPALPVADRDNVAARWLKR-------Q 1029

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
             +L        R     +       +    +S  ++ +     +      + ++G  DR+
Sbjct: 1030 PDLDDAQREEIRQAVMGVLTDARFADAFGPNSRPEVALAGQVGVNARGEAVFMSGRIDRL 1089

Query: 906  DLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALKA 946
             +     V + DYK+        E A      Q++   A L+ 
Sbjct: 1090 VIGPE-RVLVIDYKSNRPAPDTAEEAAADYQRQMAGYVALLRQ 1131


>gi|170717652|ref|YP_001783494.1| exodeoxyribonuclease V, subunit gamma [Haemophilus somnus 2336]
 gi|168825781|gb|ACA31152.1| exodeoxyribonuclease V, gamma subunit [Haemophilus somnus 2336]
          Length = 1144

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 85/761 (11%), Positives = 192/761 (25%), Gaps = 76/761 (9%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q ++ +  E  G  + +      +      +   D L     +   S   
Sbjct: 34  VILVQSGGMAQWIQWQIAEKKGISANLS---FPMPASFIWQLYVDNLSQVTASSQFSKEN 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE---- 163
               L  +I  + +        L      S   S      LA  +A++ D          
Sbjct: 91  MTWRLMEIIPHYID--QPEFYILRQYLQQSYQSSQQRYYQLASKIAELFDQYLVYRPEWI 148

Query: 164 KKWEDLHALKNEKYGMWWLLAADF----LKIASKY--WTERL-----------VELNASS 206
             WE    ++  +   ++               ++  W   L            + N   
Sbjct: 149 ISWEQNKGVEIIQQIQYYQKNLSVSESCFSQVEQHIVWQGILWRALVCSVQKETQKNVLH 208

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                +  ++  A    K     I + G +         +S ++ H +  +         
Sbjct: 209 RAHLHLLFLKHIAGEKPKNLPTRIFVFGISALPKVHLDTLSALSQHCDVHLFFNNACREY 268

Query: 267 PTAI-----WNTITEKSTNITSSNTTYST----------H--------------PQYSLA 297
              I     W  +  +                       H               Q    
Sbjct: 269 WGDIIDQSHWQRLKVRERISWQDFQQPQNTQAWLSDAQIHTFEQNGFEQIYDEKLQVGNP 328

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD-ILENKIPNIQKCF 356
            L  +  + R+ +  L  +        + +S+  L              ++K  N+ +  
Sbjct: 329 LLSSWGKLGRDYLYLLTELEANEINAYVELSEKTLLSQVQARILDLVPSKHKFLNLAEND 388

Query: 357 SDVALIEADNEREEAISIAIALR----MSLDENKKKSALITADRNLARRVKLEL---TRF 409
             +      +   E  ++   L      + D   K   ++ AD +        +      
Sbjct: 389 RSLTFHSCYSPIREVQALQDYLLHLFNQAQDLTPKDVVVMVADIDKYAPYIQAVFSQGEH 448

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRA 467
            I   I+           S    LLN    L     + T + HP+ +  F    + L++ 
Sbjct: 449 YIPYSIADSKLSENDPLVSAFLQLLNLKESLFSAEEVLTFLDHPVIRQSFNITLEDLAQI 508

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH---VPHWQSRLSEEDKELAVLLV 524
           ++ +E   +R     Y    L++    +   ++              L     +    L 
Sbjct: 509 RHWVEHSGIRFGLEKYPQQSLQNYNAWQAGLERMLLGFAMREENGLWLDTLGFDDTYGLK 568

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
             ++  +   +T     +       + +  +  +  L +             ++     L
Sbjct: 569 GQLVGYLKDFITRLYQWHQFLQVDHVIEKWEEHLIELMSSFFVVDGMDIPQQYKTTFNYL 628

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE---KSSTLFILGTLESRLLNF 641
                ++ E             ++I  +                  +     L  R + F
Sbjct: 629 IDTIQQLTELILDSSFQQEISAEVIYEVFVERLKDIPNSLKFLMGKVTFCTLLPMRSIPF 688

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYT 700
             + L G+N+  +P+    N F           +             E     +     +
Sbjct: 689 KVVCLLGMNDSDYPRQQTPNSFDLMQYHRKKGDRFRRDDDRY--LFLEALISAQQYFYVS 746

Query: 701 RSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
              R   ++     S  + +LL     +       +GQ  L
Sbjct: 747 YIGRSIIDDSEREPSVLVTQLLDYIAENINAQGDLKGQDIL 787


>gi|294669126|ref|ZP_06734210.1| exodeoxyribonuclease V, gamma subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308940|gb|EFE50183.1| exodeoxyribonuclease V, gamma subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 694

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 69/619 (11%), Positives = 144/619 (23%), Gaps = 55/619 (8%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
             L    I V ++   + +     +  G  + +                  L     L+P
Sbjct: 28  DPLQEEEILVQSQGMRRFIEHALAKSGGIAANL--RFSLPAGFNWRLMRELLPGIPELSP 85

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN--AIWLAKNLADIIDII 159
             + + R     RL+ ++ +      +       LS  +S  +  A  LA  LADI D  
Sbjct: 86  FNTEVMRW----RLLELFFSDGLSASEYSAARQALSAYLSGGSVAAYQLAGQLADIFDQY 141

Query: 160 ETEEKKWED------LHALKNEKYGMWWLL-AADFLKIASKYWTERLVELNASSPVGYQI 212
                 W D      L  L  ++    W      FL    +                +++
Sbjct: 142 LVYRPDWIDAWQNGRLIGLGEDEI---WQAELWRFLDDGRQ-------------IAPHRV 185

Query: 213 ALMRAEAEHLMKG---TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
           AL     + L          + + G     P   +L+  VA H    I            
Sbjct: 186 ALWHKLLDALSAPGAKLPERLFVFGIATLAPMYLQLLQAVAQHSEVHIFALNPAAEYWGN 245

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
           I     +   N   ++ + + HP      LL  L  +  D       S       +   +
Sbjct: 246 IIEPA-QMLQNPDDTDLSQTGHP------LLASLGKQGRDFFNALTESELHTDLQVYADE 298

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DEN 385
                    ++      +           + ++ A +   E   +   L        D  
Sbjct: 299 PLSDGLLHRLQYDIQTLSLPDGTAALDDSIRIVCAHSPLRELQILKEHLLQQFDCRPDLQ 358

Query: 386 KKKSALITADRNLARRVKLEL----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
               A++T D          +    +   +   +S             L  +L       
Sbjct: 359 PHDIAVLTPDIEPYVPFIEAVFGEQSGRPLPYSVSDVKLSRRRPLLHALEQVLELFDSRF 418

Query: 442 DFMAIATLVKHP-----LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           +   +  L+                  L     +L +      +       L +      
Sbjct: 419 EADKVTALLDSEPVLTRFGLTREDLPLLHDTIASLNIHWGLDAEMRDGADPLFTWQQGLD 478

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                                         + +    +      +       +I  WT+ 
Sbjct: 479 RLALGWLLPYGGGLWQGISPWHTDPGHTAVLSRFAAFIRRLAHWRQIWMQPENIGGWTER 538

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                  +         ++   E+        +++   G  +  + I    +   L    
Sbjct: 539 VRKLAGELFTPTEDDGQSVRQLEQALARWHQEAELAGFGGKLPYSVINL-HLARFLGSQS 597

Query: 617 TVKPKIEKSSTLFILGTLE 635
                   S +        
Sbjct: 598 ETGFCAAASPSAAWYPCAP 616


>gi|126724545|ref|ZP_01740388.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Rhodobacterales
            bacterium HTCC2150]
 gi|126705709|gb|EBA04799.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Rhodobacterales
            bacterium HTCC2150]
          Length = 1122

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 79/847 (9%), Positives = 200/847 (23%), Gaps = 127/847 (14%)

Query: 151  NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD-FLKIASKYWTERLVELNASSP-- 207
             L   ID IE   K+ E     +     +    A   F +     +  + +         
Sbjct: 315  ALGSDIDQIENLMKRVESARDARLSLQALEKTRALTTFARAFLPKFEHKKLTHGWLDFDD 374

Query: 208  --VGYQIALMRAEAEHLMKGTKG----PIIIAGSTGSIPATARLMSTVA---------NH 252
              +  +  L        +          I++  +  + P    ++  +A           
Sbjct: 375  LILKARQLLTDPAVSSWILFRLDGGIDHILVDEAQDTSPVQWDVVRLLAQEFTSGEGARA 434

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP----------QYSLAKLLDF 302
                 +    D       +      + +    + + +              +S       
Sbjct: 435  DTQRTLFVVGDKKQSIYSFQGADPAAFDNMKHHFSDALSHIGEKIHDRKLLFSFRSSAPI 494

Query: 303  LDIKREDVKRLGNV-----------SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
            L +         +             +++ GR  + +    P    D   TD ++   P 
Sbjct: 495  LRLVDTVCGNNPDAGFIQDLNHRAFHDDLPGRVDICAVVEKPEALPDQDWTDSVDRLPP- 553

Query: 352  IQKCFSDVALIEADNEREEAI-SIAIALRMS-----LDENKKKSALITADRNLARRVKLE 405
                  +  ++ A    E+    I  A+  +              L+     L   +   
Sbjct: 554  -----QNELVVLASQIAEQIQSMIGTAITNAKGQTRAITAGDFLILVQRRSALFHEIIRA 608

Query: 406  LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
                 + +  +  + +   L    L +LL  +    D +++A ++K PL  +   + Y  
Sbjct: 609  CKAAQLPLAGADRLKIGGELAVKDLGALLRFLDLNEDSLSLAAVLKSPLFGWSEQDIYSL 668

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                  +       +++ +       VL+ +    +         R+         L+  
Sbjct: 669  AQGRE-QKYLWAELRDNAEKYPETVNVLNDLRKNADFLRPFELMERVLTRHGGRRALIAR 727

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
               +    +            N + S                        W +     + 
Sbjct: 728  LGHEAEEGIDALLNQALVYEQNETPSLA------------------GFISWVDSGEIEVK 769

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                   +    +  +  + ++    ++     +    KS+ L I   + S         
Sbjct: 770  RQIDSASDQIRVMTVHGAKGLEAPIVILPDTGSRRNDLKSNLLPIADGIVSW-------- 821

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
                                 V+++        +        +         +   +  +
Sbjct: 822  ------------KTLKEDAPSVVKTAREEALTRREDEGQRLLYVAMTRAEQWLIVYAAGK 869

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD---YTTKQPHYKRPKPFPP 762
             +  +  S+  + +   G       L+     +      ++                 P 
Sbjct: 870  VDDKSWYSQIERGMQGAGAVQGPIGLRLESGDWTKTAHDIEIKTDVAHTLPEWATISAPA 929

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
                    S S++                K         +     RG + H ++  L   
Sbjct: 930  KARPKPPVSPSKLG-------------GSKALAGDGGLDEDAAMARGDVIHKMLEVLPLS 976

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
               +           + +        P  ID +            L   +          
Sbjct: 977  PKEEWAS--------LAEKILADAPFPDVIDEVLF---------VLNDPDLAHVFAANTL 1019

Query: 883  VNIPAKMAIESI-GIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSL 939
              +     +  +    + G  DR+ +     + + D+K+   P          +  QL  
Sbjct: 1020 TEVNITATLPELSDSQILGQIDRLIIEPD-KITLIDFKSNHTPAKTVNQVPDGLLRQLGA 1078

Query: 940  EAAALKA 946
             AAAL  
Sbjct: 1079 YAAALAQ 1085


>gi|182680607|ref|YP_001828767.1| DNA-dependent helicase II [Xylella fastidiosa M23]
 gi|182630717|gb|ACB91493.1| DNA helicase II [Xylella fastidiosa M23]
          Length = 723

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 78/720 (10%), Positives = 169/720 (23%), Gaps = 119/720 (16%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E++         GK+      I +   +           +        + +
Sbjct: 55  VTFTNKAAGEIQQRIDLQLRHGKRGMW---IGTFHSLAHRLLRLHWNDATLPENFQVIDS 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R+I                         P  A+W        I+  + E ++
Sbjct: 112 DDQLRLVKRVIQSL--------------GLNDTLFPPKQAMWW-------INTQKDEGRR 150

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E +    ++     W+            + ER             +       +     
Sbjct: 151 PEHIQPESHDD----WIETQR---RIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALL 203

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I+I     +       +  +AN      +    D       W         
Sbjct: 204 THYRSRFREILIDEFQDTNAIQYAFVRVLANDTG--HIFAVGDDDQAIYGWRGAKV---- 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     H Q+ L    +               +  +       +      +     
Sbjct: 258 ---------EHVQHFLKDFPN-------------VQTIRLEQNYRSSANILDAANAIIAH 295

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA  I    R  + +     + A++      
Sbjct: 296 NPDRIGKRLWTESGVGESIDLYAAYNEIDEARYIVERARQWVRDGGSYGEIAVLYRSNAQ 355

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R  +  L    I   +  G+            + L  +   +D  A   +V  P+   G
Sbjct: 356 SRAFEEVLQSEHIPYRVYGGMRFFERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIG 415

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                            V     TQ             S     
Sbjct: 416 ERTLD---------------------------EVRHLARTQGLALWDAAMACTQSTTLTA 448

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            A   +   L  +  L               +   ++L     +        +      +
Sbjct: 449 RARNALASFLNLLQQLAVETNQMGLAERIDHMLQRSELRQHWKKEARGSLDAESRQENLD 508

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E     S       +  + I      ++           V         + ++    ++ 
Sbjct: 509 ELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQV---QAGEEGVQLMTLHSAKG 565

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + L GL             F S     +      E+ +      +      RH L
Sbjct: 566 LEFPLVFLVGL---------ENGLFPSARSLDEHGRLEEERRLA-----YVGITRARHKL 611

Query: 698 IYTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
           I + +        +   + SR+L+ +      +    ++   Q  L  T++  +  +   
Sbjct: 612 ILSYAQARRIHGKDNYNVPSRFLREIPQDLLHEVRPTIQVSHQPPLGATQRPAHDERDAA 671


>gi|254491576|ref|ZP_05104755.1| exodeoxyribonuclease V, gamma subunit [Methylophaga thiooxidans
           DMS010]
 gi|224463054|gb|EEF79324.1| exodeoxyribonuclease V, gamma subunit [Methylophaga thiooxydans
           DMS010]
          Length = 1069

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 98/944 (10%), Positives = 222/944 (23%), Gaps = 107/944 (11%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
              L   L ++   +PL P  L   TI V +    + L     +     + +        
Sbjct: 10  TGQLAAWLADHLLSEPLPP--LQPETIIVQSNELSRWLSLRLAKTHQIAANLE---FPFP 64

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                +    L     L  P +       L  L+    +            + L      
Sbjct: 65  SAYIWQLFRQLWPDVPLQSPYAKEPMAWRLFELLPQAASLDGFE----AVAAYLGGDDDD 120

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                LA+ +AD  D        W              W      +            + 
Sbjct: 121 LKRYELAEKIADTFDQYLMYRPDWVQQWEQG---QATSWQGKLWQM--------LTADDP 169

Query: 203 NASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                      L    +   +        I I G +   P    +++ +A + +  +   
Sbjct: 170 QPMHRARLLQQLHDLLSHSDVVPPGLPNRISIFGISALPPVYLEIVNLLARYVDITLYYL 229

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
               H    I +   ++   +          P + L   L           +     ++ 
Sbjct: 230 SPSEHYWGDIIDPKKQQRQQLLLDFNEDEIEPGHPLLASLGKQGQAFFRQLQETQHLDDS 289

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
                 + ++ L     D+      +  +         + +    +   E   +   L  
Sbjct: 290 CFVEP-VGETMLSQLKRDIFEMATDQPSVAVKDDTSISIQV--CHSPMREMEILHDQLLA 346

Query: 381 SLDEN----KKKSALITADRNLARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILT 431
             ++N         ++T D ++       +             I+       +L  +   
Sbjct: 347 MFEQNPTLTPTDIVVMTPDIDVYAPWIEAVFATADKSRFIPFSIADSSGQQESLLITTFY 406

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
           S L       D  +I  +++ P  +  F     +      E       +   D  D  +L
Sbjct: 407 SFLQLPQSRFDVESILAMLECPAVQRRFG-LDDAALNWIREWCQQTRTRWGLDANDKAAL 465

Query: 492 VLDRIA---------------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI-TPLV 535
            L                       N     W+    +   +       HI+  +   + 
Sbjct: 466 DLPDTESNTWRAGLDRLLLGYAMPLNEPDQPWRLFDGQLAMDGISGERAHIVAALCDFID 525

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNV--CLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
                +       +I+DW K    CL                        L  L S   +
Sbjct: 526 ALDAWRQRLARQNTIADWQKQLNQCLDAFFNTEGLEETQFETEITAIRTQLERLSSGAKQ 585

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                   A   +  +   +       +      +   G +  R + FD + L G+N+ V
Sbjct: 586 ADFEQTIGADLILSWLQSHLQPVDNAHRFLGH-GITFCGMVPMRSIPFDVVCLVGMNDEV 644

Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTI 711
           +P+      F           ++             + +  +    +       +N    
Sbjct: 645 FPRRQPSVSFDLLAHDHREGDRSRRDDDRYL-FLEALLSAQQTFYMSYVGASVVDNSEIP 703

Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK--------------------- 750
            S  +  L  L    F           +     L   ++                     
Sbjct: 704 PSVLVSDLQDLLAERFETETTATILEQIITKHPLQAFSRRYFDGNNDQLFSFNASHCPTQ 763

Query: 751 ---QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
              +       P P  +   R  +  ++ +    P     R  L +  +   ++  +  +
Sbjct: 764 EMLEQANWFETPLPEADDSWRQVTRDQLIRFFAHPTKFILRERLGIR-LELDEEALESRE 822

Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH---KIS 864
                              +  E   L + I+D    + +      ++         ++ 
Sbjct: 823 ---------------PFALDGLESWQLRQWIVDESLSQHSDEGLKPVVQATGMLPQGRLG 867

Query: 865 HSFLEHEEKIQSSI----EKIFVNIP---AKMAIESIGIHLTGF 901
            ++ E E +           +          + +   G  + G 
Sbjct: 868 DAWFEKESQTVDDFIEKLRPVLPEQGWITLAIDLNIDGFQINGQ 911


>gi|300781190|ref|ZP_07091044.1| exodeoxyribonuclease V beta subunit [Corynebacterium genitalium ATCC
            33030]
 gi|300532897|gb|EFK53958.1| exodeoxyribonuclease V beta subunit [Corynebacterium genitalium ATCC
            33030]
          Length = 274

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 84/263 (31%), Gaps = 24/263 (9%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S     +  P     R I ++          +    GTL H ++ E+      + T
Sbjct: 9    ALSPSRANDYLQCPLKYRLRAIDRIPEPKT-----EAQVTGTLVHAVLEEMHAWPREERT 63

Query: 829  -PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNI 885
             P     +K         ++           LF   + S L    E +     +     +
Sbjct: 64   YPAAVKRIKPAWQKMLIDDSSCADPIADEYALFVA-ARSLLRGYFEMENPHGFDSHAQEM 122

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
                 +   G+ + GF DR+D+  +G + + DYKTG  P    + +    Q+   A    
Sbjct: 123  YVDAVLP-NGVPVRGFIDRVDIAPTGEIRVVDYKTGKKPSPRFSDEAK-FQMRFYALVYW 180

Query: 946  AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
               F  I  +    L Y+++     +     +          E   ++L ++   +Q+  
Sbjct: 181  R-MFGTIPHQ--LRLMYLKVIDSLFLAPSREE---------LEFFERDLGDLWHKIQSDG 228

Query: 1006 QPFISHLRLSEKSNIQSEYDHLA 1028
            Q      + S+       +  L 
Sbjct: 229  QSGNFRPKPSK-LCNWCSFQALC 250


>gi|78221316|ref|YP_383063.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15]
 gi|78192571|gb|ABB30338.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15]
          Length = 742

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 75/697 (10%), Positives = 174/697 (24%), Gaps = 124/697 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     + G  +   P+I +           D+            
Sbjct: 53  QILAVTFTNKAAGEMRERVERLVG--AGEAPLIATFHSTCARFLRRDIHHLGY------- 103

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                        +        + L  E    L +        A++ A  ID  +     
Sbjct: 104 ----------DSSFAIYDDKDAEKLLKEVIAGLGLDEKRFP--ARSFAAAIDDCKNRGIP 151

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
             ++                + L      + ERL + NA       +  +R   EH    
Sbjct: 152 PGEIPTGDY---------TGEMLARVYGAYQERLKKCNALDFGDLLMLTVRLLEEHPEVL 202

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     + P   RL+  +A       V+   D       W     ++  
Sbjct: 203 ARYRDKYRWILVDEYQDTNPIQYRLVRLLAGERRNLCVV--GDDDQSIYRWRGADIRNIL 260

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G V+ ++                   +
Sbjct: 261 DFEKDFP--------------------------GVVTVKLEQNYRSTQNILAAAGAVVAK 294

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398
           N       + +       +      +EREEA  +   +   +      +  A+       
Sbjct: 295 NRGRKAKTLWSENPAGEAIVYRRLSDEREEARFVCREVEKHVRRGGDLRDVAVFYRTNAQ 354

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  +   GI   +  G+     +    + + L  +    D +++  ++  P     
Sbjct: 355 SRVIEDAMVADGIPYHMVGGMRFYERMEVKDILAYLKVLVNPADEVSLKRIINVP----- 409

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                     + +  +A R     YD                               +  
Sbjct: 410 -ARGIGHATVDKVAELAFRKGIILYDAFS----------------------------EAS 440

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC-LDEHRKLPNLWF 577
            + LL       I   +          G + +S+     +        L E R       
Sbjct: 441 TSGLLSTGPRGKIAGFMALMEQFAGLAGTVPLSELASRIIDGTGYAAKLKEERSDEAQDR 500

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            +  + L S   +   T              + ++     ++    K  +  ++    ++
Sbjct: 501 LDNLQELCSAMEEFERTSDE-----KTLAAFLEQVALVSDLERGEGKRESATLMTLHAAK 555

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + + G+ E ++P   +              L   E    +    +      R  
Sbjct: 556 GLEFPVVFMIGMEEKLFPHVRS--------------LDDPEAMEEERRLCYVGMTRARER 601

Query: 698 IYTRSLREN-----NIPTIASRWLQRLLVLGGTDFFD 729
           +   + R       +   ++SR++  +         +
Sbjct: 602 LILTNARRRRLFGQDQVNMSSRFIADVPRDLLDLEDE 638


>gi|145640609|ref|ZP_01796192.1| phosphopyruvate hydratase [Haemophilus influenzae R3021]
 gi|145274535|gb|EDK14398.1| phosphopyruvate hydratase [Haemophilus influenzae 22.4-21]
          Length = 1126

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 118/977 (12%), Positives = 241/977 (24%), Gaps = 130/977 (13%)

Query: 39  LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94
           L P        I V +   +Q L+ E  + TG  + +   +P        + +   A  L
Sbjct: 24  LPPEDPFQQDIILVQSPNMVQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
            +  L  P         L RLI I+  K  +    L      S          L+  +AD
Sbjct: 78  PATALENPFDKDSMTWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135

Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + D       +W             + +   +       +       K   + W   +V+
Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNDTLFAQIQGNTKWQGELWRSLVVD 195

Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                  A+         +   A+    K     I I G      A   ++  +++  + 
Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297
            +            I +   +   +            Q   +                  
Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRKRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315

Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                          +                 Y  +                    LEN
Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIKSNSLLGQLQSQILHLEN 375

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
           K  NI K    + L    +   E   +   L    +++     K   ++ AD N      
Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPNLTPKDVVVMVADINQYTPYI 435

Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             +          I   +S        +  S   +LL           +  L+  P  + 
Sbjct: 436 QAVFGQKNGGAPQIPFSLSDNKLSENDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495

Query: 458 GFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            F           E                G   +     L+ ++L     ++       
Sbjct: 496 RFNISLADLPLVREWVADSGIRVGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                S   K      +      ++ L       +      SI  W ++    L +  + 
Sbjct: 556 LGLNSSYGLKGELAGKLSQFFTVLSALYETLQQAH------SIEKWQEILTALLSDFFVR 609

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624
                  +++ +         +++ E    +        ++I  +I     +        
Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTLHFTEELQAEVIADVITMKLEDAPNSLKFL 663

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           +  +     L  R + F  + L G+N+  +P+    N F           +         
Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722

Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---- 737
               E     R     +   R   +N P   S  + +LL        +N+    +     
Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQNENVLTVTEHPMTA 781

Query: 738 ----------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                              W     +     + +          +        +   + +
Sbjct: 782 FSPDNFKYNEKFTRSFATKWLPIAQFDASSNNSEFAVTMTENPEKIEEVELDSLVSFVEN 841

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
           P   +  + L + F    ++  D  +  TL  + +        N                
Sbjct: 842 PVKFFFEKQLGVYFRDKDERIADSENF-TL--SGLDNY--SLNNDLIYLDEQNFTDYFRQ 896

Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----SIGIH 897
              K  LP       +     I  + LE ++KI    E    +I   +A++    +  I 
Sbjct: 897 AEVKGVLPRA--EFGKVYAENIRDNVLEFKKKIADLGEPKQASIDFNIAVDWQNENQKIR 954

Query: 898 LTGFADRIDLLKSGFVD 914
           L G+ D +    S  + 
Sbjct: 955 LFGYMDALFGDDSQVIH 971


>gi|84501212|ref|ZP_00999417.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
            batsensis HTCC2597]
 gi|84390503|gb|EAQ02991.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
            batsensis HTCC2597]
          Length = 1117

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 89/838 (10%), Positives = 209/838 (24%), Gaps = 96/838 (11%)

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            L   +  ++  +ET   +   L  L        +     FL   ++    R         
Sbjct: 300  LMDRIEPLMARVETARSRRLALELLDRTVALHDFARL--FLPDYARAKMLRGAMDFDDLI 357

Query: 208  VGYQIALMRAEAEHLMKGTKG----PIIIAGSTGSIPATARLMSTVANH---------PN 254
            +  +  L   +    +          I++  +  + P   +++  +A             
Sbjct: 358  LRARDLLTNQDVSAWVLFRLDGGIDHILVDEAQDTSPVQWQVIQALAREFTSGAGAQDDK 417

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               +    D       +        +              +  + +      R     L 
Sbjct: 418  TRTIFVVGDKKQSIYSFQGADPSEFDRMREEFDDRLTALGTPLQRMALAHSFRSAPALLA 477

Query: 315  NVSNEMYGRSMVIS-------KSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL-IEADN 366
             V     GR                           + + +     +    V L  E D+
Sbjct: 478  LVDKVFEGRVEAGFSPDETHIAFHETLPGRVDLWPLVEKVENTEEGEWDDPVDLPGEQDH 537

Query: 367  EREEAISIAIALRMSLDEN---------------KKKSALITADRNLARRVKLELTRFGI 411
                A  IA  +R  +D+                     L+   R L   +        +
Sbjct: 538  NVVLARRIARTIRGMIDDRTPLPLGDGTARPIHAGDILILVRRRRRLFHEIIRACKGEDL 597

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
            +I  +  + +   +    LT+LL+ +   +D + +A ++K PL  +     +    +   
Sbjct: 598  DIAGADRLRIGAEIAVKDLTALLSFLATPDDDLGLAAVLKSPLFGWDEQMLFDLAHRRET 657

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                            L +        +       H       E  E  ++  D   + +
Sbjct: 658  ----------KRLWPALDAREDHAETRRILRDLRDHADFLRPYELLERVLIRHDGRRRLM 707

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
              L T   +      + +++                       +W + +   +       
Sbjct: 708  ARLGTEAQDGIDALLDQALAY----------ERTDVPSLTGFLVWLQGDDPEVKRQMESA 757

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                  +  +  + ++     +     + +  +   L           + D +       
Sbjct: 758  GSRIRVMTVHGSKGLEAPVVFMPETQARREELRGEVLS----------DDDLVW------ 801

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
              W     + P L   ++     K  E+          M    + LI   +         
Sbjct: 802  --WNMPAREAPPLLAGLREAKLRKQREETDRL--LYVAMTRAEKWLIVAAAGELGKSGDT 857

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
                ++  +   G          G        +       P  +  +P  P  A      
Sbjct: 858  WYERIRDGMTALGAAPLIRPDGEGLRLESGDWQGLTPIDPPARQDRRPALPDWATRPAPR 917

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             +   + ++      A+ +   + +           RG   H ++  L      +     
Sbjct: 918  AAAAPRTLSPSELGGAKALPGEEGLDEEA----AKRRGRQIHRLLEHLPGVPETELAD-- 971

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
                     + F   + P   +     L    +   L           +  V +     +
Sbjct: 972  --------RAAFVLGHGPDAAEGEELALLTGEAQRILFRPNLRHLFGPEALVEVSVTADL 1023

Query: 892  ESI-GIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
            +++ G  + G  DR+ ++ +  V   DYKT      + E     +  Q+   AAAL  
Sbjct: 1024 DALDGRRIHGTIDRL-IVGNETVLAVDYKTNAVVPDRPEQVPDALLRQMGAYAAALAR 1080


>gi|184200504|ref|YP_001854711.1| UvrD/REP helicase family protein [Kocuria rhizophila DC2201]
 gi|183580734|dbj|BAG29205.1| UvrD/Rep helicase family protein [Kocuria rhizophila DC2201]
          Length = 1241

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/421 (12%), Positives = 107/421 (25%), Gaps = 35/421 (8%)

Query: 30  LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKF 89
           +VE       +      + +  P++ +   LR          +   P++++      +  
Sbjct: 57  VVEGVVRRIADGTDPQRMLVLAPSRESAATLRDLVSRRAA-ATISTPLVRAWQAYAFDVL 115

Query: 90  TA----DLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                 +LL   +L P + S  ++   LA ++      L             +       
Sbjct: 116 RRAQAEELLTGIDLPPVLLSGPEQDAFLAEMMRGHATGLG------GAVVWPADLQDALG 169

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                  L ++ D +     + E L A         W  AA F     +     L   N 
Sbjct: 170 TRGFRGQLRELFDRMNEYRVEPEQLAAWAGPLGHPEWRAAAAFRTEYQQV--RALRMPNV 227

Query: 205 SSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
             P        R   EH       +     +++     + P+  RL+  +     G   +
Sbjct: 228 FDPSELVDRAARVLEEHPDFLSREQQRLDVVMVDDLQEATPSVHRLIGVL---CRGRDAV 284

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK---------LLDFLDIKREDV 310
              +       +                  +HP   L           + +        V
Sbjct: 285 FTANPDTTVQGFRGARPDLLRTLEDRVGTPSHPVQRLHLHTSHRMSLPVNEAWQRVARAV 344

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
             +     E        +      D +D  N  +              V +    +   +
Sbjct: 345 PVIAGARTERAPEQPADTDPEPGGDPADGVNAPVTGPGTAGRLVTPDGVRVATFASPTAQ 404

Query: 371 AISIAI---ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLH 426
           A   A     L +      ++ A+I         +  +L   G+    SA   PL     
Sbjct: 405 ARWCADHFLRLHVLRGIPYREMAVIVRSGPQLSALTRQLASLGVPTTTSAAETPLRDEPA 464

Query: 427 S 427
            
Sbjct: 465 V 465



 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/531 (12%), Positives = 142/531 (26%), Gaps = 73/531 (13%)

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
             + +R  +      +L++                     L+E   + A  + D +     
Sbjct: 615  PMEVRRIRQRLRGYELRTGGGRTSDDLLVQALGDGLLLELAEVRSDAAARVADMLQAGQD 674

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
             L T            ++ + + +     +         +      +    L     + +
Sbjct: 675  ALDTPGATAE--SVLWALWEASGVGPRWRRRALAGGAEAVRADRDLDAVVGLFEAAERFV 732

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
            +      A+A     +  + +  +T+  +      + +     +    +  +++ G+ +G
Sbjct: 733  DQVPGATASAFM-EYMDHQELPMDTLAARAPAEDNVSVTTPAGAAGREWSHVVVAGVQQG 791

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL--------------I 698
            VWP    +   L   + +D      E+ +   A D         L               
Sbjct: 792  VWPNTALRGQLLGTDVLTDALDHGPEQAVRLGAVDRLRQVRFDELRQFATAVSRARSGLT 851

Query: 699  YTRSLRENNIPTI----------------------ASRWLQRLLVLGGTDFFDNLKKRGQ 736
             T    ++  P+                             R L        + +     
Sbjct: 852  VTAVATQDEQPSEFVDLVALGRGEETGITVEELDAPEPLTLRQLTGTLRRALNAVDTPET 911

Query: 737  CYLDWTRKLDY-TTKQPHYKRPKPFPPL-------------EAQPRTYSFSEIKQLINDP 782
                  R L    T Q       P                   +P   S S+I+ +   P
Sbjct: 912  EREAAARLLHEFATAQDPVAGAAPEQWWGVNPLTTEEALFDAEEPVRVSPSKIETVHRSP 971

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
               +             +    +   GTL H+I   +          +   L+ ++    
Sbjct: 972  LDWFVG------EARATETTDLKRGLGTLVHDIAEHMP-------DADAVELITELRRRW 1018

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAKMAIES--IGIHL 898
                                +   F ++  E + +   E + V    ++ +        L
Sbjct: 1019 PSLGMPEGWTGAQELERAETMLRKFAQYAREMRTRHERELVAVEGGFQVLVRDSARDALL 1078

Query: 899  TGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGS 948
            TG  DR+++   G   + D KTG   P      +   PQL+    AL+AG+
Sbjct: 1079 TGRVDRLEVDAHGRHVVVDLKTGRHKPTGADIPEH--PQLAAYQVALQAGA 1127


>gi|227494729|ref|ZP_03925045.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831729|gb|EEH64112.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 868

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 76/710 (10%), Positives = 193/710 (27%), Gaps = 97/710 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD-----VVEEKFTADLLLSYNL 99
             +     T +A  E+R     + G ++  +  + +        + E+   A L  S+ +
Sbjct: 100 GEILAITFTNKAAAEMRERVANLVGPQARRM-WVFTFHSACVRILREQYQAAGLRSSFTI 158

Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
                +        RLI +    L    K                    AK LA  I  +
Sbjct: 159 YDAADSQ-------RLITLVSKNLNLDTKRFT-----------------AKLLAARISDL 194

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
           + E   W+                 +  +    K++  +L E N        + +++   
Sbjct: 195 KNELITWQKYQETAAND------PVSKAVAQVYKHYQRQLNEANVLDFDDLIMTVVQLLQ 248

Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA---IVLPGLDCHIPTAIW 271
           ++       +     I++     +  A   L+  +           +    D       +
Sbjct: 249 KNPAVAEHYRRRFRHILVDEYQDTNHAQYVLVRELIGTGADVPAGELTVVGDSDQSIYAF 308

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
              T ++      + T                             +  +           
Sbjct: 309 RGATIRNIEEFEKDFTN--------------------------AHTVVLEQNYRSTQNIL 342

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS--LDENKKKS 389
              +    +NT      +         ++   AD+E +EA ++   +      D      
Sbjct: 343 SAANAVIAKNTGRRAKALWTSSGAGELISYDAADSEYDEARAVIQEIDRLTPFDFKYGDI 402

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A+     + +R ++  L R GI   +  G             + L  I   +D +A+  +
Sbjct: 403 AIFYRTNSQSRALEEHLIRAGIPYRVVGGTKFYERKEIKDALAYLQVIANPDDTVALRRV 462

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
           +  P    G   +        ++ +          I         R  ++  +     WQ
Sbjct: 463 INTPRRGVGDKAEAAIATHAEMQGIGFGAAVQQVWI----QQGCPRGESEGLDISEGDWQ 518

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
           + +SE   +    +     + +  +  +     +       +   ++    L      + 
Sbjct: 519 NAVSEALTQTPASVSGITTRALNAVANFWGLIEAMQIFARTNTIAEVLDQVLDLTGYLDE 578

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA--IEWIDIITRLIDGETVKPKIEKSST 627
            +      +       +    +    +         ++++ +  + D + V  + E S  
Sbjct: 579 LRRSTDPQDMNRVENLAELHSVAADFATTNPQGQLHDFLERVALVADADQVASESENSGE 638

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
           + ++    ++ L F  + + GL +G +P   +              L    +   +    
Sbjct: 639 VTLMTVHTAKGLEFPVVFVTGLEDGTFPHQRS--------------LMDPSELAEERRLA 684

Query: 688 FEMANGTR-HLIYTRS----LRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
           +      R  L  +R+              SR+L+ +          + +
Sbjct: 685 YVAITRARKKLYLSRAAVRSAWGTPTDLPPSRFLEDIPAELMEVRRAHTQ 734


>gi|222147062|ref|YP_002548019.1| ATP-dependant DNA helicase [Agrobacterium vitis S4]
 gi|221734052|gb|ACM35015.1| ATP-dependant DNA helicase [Agrobacterium vitis S4]
          Length = 1182

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 84/814 (10%), Positives = 201/814 (24%), Gaps = 79/814 (9%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIA 233
              A    +     + E     +                   +              I++ 
Sbjct: 357  RAALTLAERLDHDYEELKKRSSQLDFEDLIARTAELLTRSTVGPWVHYKLDQGIDHILVD 416

Query: 234  GSTGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
             +  + P    ++ ++           P         D       +     +  +  +  
Sbjct: 417  EAQDTSPVQWSVIRSLREDFFSGQSARPVRRTFFAVGDEKQSIYSFQGAKPERFSQEARE 476

Query: 286  TTYSTHP-------------QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
            T                     S   +L  +D      +    +S        + S+   
Sbjct: 477  TEQEVARGSESFSAVRLPLSFRSTNAVLSAVDQVFSVTENARGLSAVAEPVVHMSSRIGH 536

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--------- 383
            P             ++         D     A +    A  IA  + + L          
Sbjct: 537  PGAVEVWEMIAPEGSESEEDWTAPFDATPENAPS-AMLARRIAQRIEIMLARETIVEKGV 595

Query: 384  ----ENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                E      L+         +   L  R  I +  +  + L+  +    L +L   + 
Sbjct: 596  ERSIEAGDILILVRKRGAFVNALTRALKRRSNIPVAGADRLRLTGHIAVQDLLALGRFVL 655

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
               D +++A L+K PL      + +   A+     V     + +    +     L R+  
Sbjct: 656  FTADDLSLAALLKSPLFNLSEDDVFEVAARRGEISVFAEIARLAEAGSEKWQAALARLHR 715

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                                L           +  L +  ++        ++S       
Sbjct: 716  YVALARDLLPHDFYGRVLGPLGGR-----RDFLARLGSEVSDIIDEFLTFTLSHEQAGLP 770

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                 +   E         +++ ++   +    +     ++A  +  +D         + 
Sbjct: 771  GLQSFITTLEQEAPEVKREQDKERSEVRIM--TVHASKGLEAPIVFLVD-------DGSK 821

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---NLK 675
                       ++ T          + +  ++  +  ++ AK           L    + 
Sbjct: 822  AFNHTHLPKFRMIETGAQPQECPVWVPVKAVDNPLTAEDVAKRKQAIEEEYRRLLYVGMT 881

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
             A   +    +  +            S  E +      +             ++N    G
Sbjct: 882  RAADRLVVCGYRGKQVQTEIWHQMVWSALELDTERCRQQGFGGPEGDWTGLLWENAVVPG 941

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
            +      R+     +       +P PP    PR  S S     +ND         L+   
Sbjct: 942  RFERQEKRQEKRELETLPEALLRPAPPPPRLPRPLSPSGAGIEVNDEDGDML---LRSPL 998

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                +       +G L H ++  L     ++  P      ++            P     
Sbjct: 999  FSKGEDAGLALQKGRLVHRMLQMLPGLPADERKPAARRYGERAAR-------FWPAH--- 1048

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKSGFV 913
             R    +   + L+H    +               + + +    ++   DR+ +  +  V
Sbjct: 1049 ERDRLVESVLAILDHPALSEVFSSHAQTEFSLMGTIRLGAEQRAVSARVDRMAVT-NEKV 1107

Query: 914  DITDYKTGDNPKKETAQKLI--DPQLSLEAAALK 945
             + DYKT   P ++ ++  +    QL++    LK
Sbjct: 1108 ILLDYKTNRQPPRQESEVPLSHSAQLAIYRELLK 1141


>gi|288959584|ref|YP_003449925.1| hypothetical protein AZL_027430 [Azospirillum sp. B510]
 gi|288911892|dbj|BAI73381.1| hypothetical protein AZL_027430 [Azospirillum sp. B510]
          Length = 909

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 87/837 (10%), Positives = 198/837 (23%), Gaps = 53/837 (6%)

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANH 252
            + L  L A        +   A     +       +  ++ AG  G+ PA    +ST+A  
Sbjct: 58   QFLARLRAVDDGARFFSAALAADGWAVAALILGWRDALVEAGWVGADPAGGERLSTLAAV 117

Query: 253  PNGAIVLPGLDCHIPT---AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                  L                 +            T +         LLD L      
Sbjct: 118  ERADGPLAPGRADRLRALLDALAGLPPALPVSELRLATPAGLLPPGWRLLLDRLAAAGVR 177

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            +        E       +    L      +      E            V ++EAD+E  
Sbjct: 178  ILPCKEGGKEGGKEGDALGAGDLAALGRRLAGDRSAE------ADGDGTVTVLEADDEWM 231

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
             A  +A  L    D N +   L+         +     R G+     AG        + +
Sbjct: 232  AAEVVAGWLAARPDLNHQ---LVIVRGQRTTLLDEACRRLGLPRPGGAGRS-PWRGAAQV 287

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
            L     A+++  D   +  L+  P +                              +   
Sbjct: 288  LPLAFAALWEPLDAHRLMELLTLPQSPIPSGVAEA-----------FADALVKAPGIGGP 336

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
                     +         +    +E +             +      +T        ++
Sbjct: 337  VWQEAWRTARDRRRARLEARGLSGKELERRLAAEEREWRGWLESARFPETAGVPVPTAVA 396

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
            +                  ++        +     +   + ++      + +  +   ++
Sbjct: 397  LCGRVAAWARGRAAP-RPGNQGGERDEMLDAVADQAETMAAVVAACGLPRLSRPQLDRML 455

Query: 610  TRLIDGETVKPKIEKSSTLFI-LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
              ++      P     +  +  +           T++  G  E              R+ 
Sbjct: 456  DMVVADGVAVPAGGAEAAAWATVDDPGQIWGAAGTVLWWGFVEPAATHPAIPWSNAERLA 515

Query: 669  QSDLNLKTAEKYIGQAAHDFEM----ANGTRHLIYTRSLRENNIPTIASRW-------LQ 717
             +             A   +       N    LI  +  R     T            L 
Sbjct: 516  LAGAGCLPEPAGARLAREAWAWRLPLLNAVDRLILVKPRRIAGEVTADHPLWHEIGPALA 575

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            R   L         +          ++L+         R +      A P   S + +++
Sbjct: 576  RCPPLSAGAALTADRLTFAGRTLTRKELEPGVPPQPRARWRVPAGAVAVPDRLSATSLER 635

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L+  P A     +  +               G+L H ++  L+ +R +    +       
Sbjct: 636  LLGCPLAWVLHHVAGIRSGVLRAIPDGVRLLGSLAHAVLAALLTERPDWTPDDAATRAAA 695

Query: 838  IIDSHFEKENLPPHID------IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
            + D        P             R    + +   +    +  + +      +  +  +
Sbjct: 696  LFDRLLPALAAPLLRPGLGLEMERARAGVAEAARRLVVLIAE--AGLRVRGCEVAVEADL 753

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKT--GDNPKKETAQKLIDPQLSLEAAALKAGSF 949
               G+ L G  D +    +G   + D K   GD  +++   +    QL++    +   + 
Sbjct: 754  --GGVTLEGRIDLLLETAAGAPVVLDLKWSGGDKRRRQEIAEGRAVQLAVYGRLVGGEAG 811

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
              +    +       L                    +   +       +  L +G+ 
Sbjct: 812  PAVPAGYMMLAQQRLLACAPAPFPPHLHVPGSDLPAVWRAAWSGRSAALERLADGDI 868


>gi|152968346|ref|YP_001364130.1| ATP-dependent nuclease subunit B-like [Kineococcus radiotolerans
           SRS30216]
 gi|151362863|gb|ABS05866.1| ATP-dependent nuclease subunit B-like [Kineococcus radiotolerans
           SRS30216]
          Length = 1045

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 93/780 (11%), Positives = 202/780 (25%), Gaps = 107/780 (13%)

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
           A    +                    S       L       +    +   ++    +  
Sbjct: 159 AYRGHLGAALPEARLLEVAVEALAAGSAPDTHVVLVAPGRRTRAEDRLLAALHAAGRLSV 218

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-- 386
                 DT+        +   P      + V L+ A +  EE      ++   L EN   
Sbjct: 219 LCCDAQDTAWAAELLGQQVAPPAEGAATAYVDLVVAPDPEEEVRLAVRSVLAHLQENPAR 278

Query: 387 --KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
             +     T+ R  AR +  +L+  G+   +     L+ T+    L  LL    +     
Sbjct: 279 PDRIGIAFTSSRPFARLLAEQLSTAGLPHHVPGQRTLAQTVAGRTLIGLLELHRRGYPRA 338

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
            ++                 +     +   A      S     L            +   
Sbjct: 339 DVSAFFASGPLLTADGTYVPASTWERVSRTAGATRGLSTWRQRLDRFEQQGPRHTGDEES 398

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
           +       +     L +  +    +      T+     +    L +    + +V      
Sbjct: 399 IRQVA---AARSLRLTLDGLAAAAEAALGAPTWAHAAEALRVALRVCLGDRRSVDGWTLR 455

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
              + ++   L  +      ++L +      +    +A    D +T  + G         
Sbjct: 456 AEADLQRAVELEQQAHDAVDTALGALAQLDATGQGPDAAAVRDAVTDAL-GTAAPSATVL 514

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN---LKTAEKYI 681
              + +    E    + D L++ GL+E   P    ++P L    +  L+      A +  
Sbjct: 515 GRGILVGPVREFAGADLDLLLVLGLSEDAAPARQREHPVLRDADRELLSPDLATLASRRA 574

Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTI--ASRWLQR--------------------- 718
            +             ++ + +   +       AS W                        
Sbjct: 575 DEQRAWRAALRTAPQIVLSCARANSRTQRRQFASPWFLEQASLRAGRPVGAGEVDSPGSA 634

Query: 719 --------------------------------LLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                                           L          + + +        R   
Sbjct: 635 LPGLRSYDSFVDALDRGGEFTSVHELDAARTVLAGAVDELAAADPRLQRGLVAARARARG 694

Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK--DPD 804
                       P    E   R +S + +++    P     R +L++  +    +     
Sbjct: 695 EFGPWTGGTEELPEGLRERVDRGHSATSLERWATCPARHLFRDVLRVGRLEEAAEHDSVS 754

Query: 805 RTDRGTLFHNIITELIKKRIN-----------KNTPEINHLMKQIIDSHFEKE------N 847
             DRG+L H+++ E ++  +              TPE       ++D+H  +        
Sbjct: 755 PADRGSLLHDVLEEFLRPHLGTPEQPGRSPDAAWTPEEVQAALDLLDTHVARLERRGGLG 814

Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE--KIFVNIPAK------MAIESIG-IHL 898
             P +  +      +     L  +   +++     I V           + + + G + L
Sbjct: 815 RHPALWPVQLRELRRQVADLLAADSARRAAERSWPIAVEAAFGDEDALVLDLPTQGALRL 874

Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKET-------------AQKLIDPQLSLEAAALK 945
           +G  DRID   +G + + DYK+G +                    +    QL L A A +
Sbjct: 875 SGRIDRIDATAAGGLVVQDYKSGKSSSYGEFPKRGAAADDTDLTDRGRRLQLPLYALAAR 934


>gi|254470528|ref|ZP_05083932.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062]
 gi|211960839|gb|EEA96035.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062]
          Length = 812

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 85/691 (12%), Positives = 191/691 (27%), Gaps = 123/691 (17%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A +E++                   +G  + E       L       V 
Sbjct: 94  GQILAVTFTNKAAREMKER-----------------IGAYIGENVEGMAWLGTFHAICVK 136

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    L  +  +          W AK  A ++D  +    
Sbjct: 137 ILRRHAELVGLKSSFSILDTDDQVRLIKQ--IIQAEGLDEKRWTAKTFAGLLDSWKNRGL 194

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKI-ASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
             E +               A+ L     + + ERL  LNA       +  +    EH  
Sbjct: 195 TPEQIS-------AGEAQAFANGLGRKLYQTYQERLSILNACDFGDLLLHCITIFKEHDD 247

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +  A    +  +A     + V    D       W      +
Sbjct: 248 VLKSFQSRFRYMLVDEYQDTNIAQYMWLRLLAQ--GNSNVACVGDDDQSIYGWRGAEVDN 305

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +   +T            + ++R        +S   +  +    +      T  
Sbjct: 306 ILRFEQDFPGAT-----------VVRLERNYRSTSHILSAASHLIAHNQGRLGKTLFTDQ 354

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITAD 395
           +              +    V +  A + +EEA SI   +  +L  +     + A++   
Sbjct: 355 V------------GSEDEDKVQVASAWDSQEEARSIGDEI-EALQNHGHSLNEMAILVRA 401

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
               R  +      G+N  +  G      +      +    + + +D +A   +V  P  
Sbjct: 402 SFQMREFEDRFVTLGLNYRVIGGPRFYERMEIRDALAYFRCVMQPSDDLAFERIVNTPKR 461

Query: 456 KFGFPEKYLSRA-KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
             G     +  A      +  +          +L+                         
Sbjct: 462 GLGEATLKIVHAYARERAIPLMIAAGELVQTNELRPKA---------------------- 499

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                           +  ++    N  +    +S ++  ++ +         +      
Sbjct: 500 -------------RAALADVLGMFENWRNQVETMSHTELAEIIL---------DESGYTQ 537

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
           +W ++           + E    ++   +   +++ I+ ++D ++      +   + I+ 
Sbjct: 538 MWRQDRSAEAPGRLDNLKELIRSMEEFESMAGFLEHISLVMDKDS----DVEEDAVSIMT 593

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L FDT+ L G  EGV+P   A +         +      E+    A        
Sbjct: 594 LHSAKGLEFDTVFLPGWEEGVFPNQRALD---------ETGQAGLEEERRLAYVGLTRGR 644

Query: 693 GTRHLIYTRSLRENNI--PTIASRWLQRLLV 721
               + +T + R +      I SR+L  L  
Sbjct: 645 KRVKVWFTSNRRIHGSWQSCIPSRFLDELPA 675


>gi|117928982|ref|YP_873533.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
 gi|117649445|gb|ABK53547.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
          Length = 1164

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 121/1087 (11%), Positives = 255/1087 (23%), Gaps = 155/1087 (14%)

Query: 46   SVTIYVPTKRAIQELRSEFIEI---TGKKSTILPIIKSLGD---VVEEKFTADLLLSYNL 99
             V     T+RA  EL            ++  I P + ++G+   V  + +   ++  + L
Sbjct: 77   QVLGLTFTRRAATELAGRIRRRLTQLARRRVIDPEVLAVGEPTVVTYDAYAGRIVADHAL 136

Query: 100  NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
               V    RL+  A     +  +  D          LS          LA  LA     +
Sbjct: 137  RLGVEPGLRLIGQAASWQ-FARRAVDAYDGPMDAVTLSPTTVTNRVFILAGELAQHRVDV 195

Query: 160  ETEEKKWEDLH----------------ALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
            E+  +  + L                 A   E+      L    L I    +  R  +  
Sbjct: 196  ESVAEFCDQLAAKLCALPYPRGRSRTMAEDVERIVDQLKLRRQLLPIVVD-YRARKRDAE 254

Query: 204  ASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                               E     +     +++     +  A    +  +   P  A  
Sbjct: 255  VLDFADQMALAATLAELFPEVGAAERAAFRAVLLDEFQDTSHAQLDFLRALF-LPKTAP- 312

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
             P  +       W                 ++H  +          +    +      S 
Sbjct: 313  -PDAESPAAAQPW-LTVVGDPAQAIYGWRGASHGTFRALIAEAPCAVTVFPLATSFRNSP 370

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI---- 374
            E+   + +I++       +         +  P  +   +    +E +             
Sbjct: 371  EILAVANLIAEPLRAGRDTTAVPVLRPRDDAPVGEARCACYPTVEDEAAAVAEYVARVLR 430

Query: 375  AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                     E  +  A++         ++  L   G+ I I     L        + + L
Sbjct: 431  EDEAARQAGEPGRSIAILLRKWRQLLPLEPALRARGVPIRILGVGGLLDQPEIEDVVATL 490

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA---------------LELVALRGN 479
              +   +   A+  L+     + G  +                        L     R  
Sbjct: 491  QVLVDPDRGDALMRLLTGARWRIGAADLAALHRWARRCAAADDRAATESQTLHGPDDRAA 550

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
              S                  ++  +     RL  E                   +  + 
Sbjct: 551  TESQTSHGPDDAGAPLGGDAADSLSLVDALDRLRTERWVTQSGWFSVEGGRRLARLADEL 610

Query: 540  NKNSTCGNLSISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
            +   +  +  + D     +    +    L    +      +   +  +            
Sbjct: 611  HHLRSRLSQPLPDLVAEVIATIGVDVEVLARGEQPGRSNLDAFLEVAADYADAAENPTLG 670

Query: 598  IKANAIEWIDIITRLIDGETVKPKIE--------KSSTLFILGTLESRLLNFDTLILGGL 649
               + +E      R +D       +         +   + +L    ++ L +D + + G+
Sbjct: 671  GFLDYLEAAGYAERGLDRPEDDAAVAFDAAAGERRPGVVDVLTVHAAKGLEWDVVCVPGM 730

Query: 650  NEGVWPKNTAKNPFL-------------SRVMQSDLNLKTAEKYIGQAA----------- 685
             +GV+P                       R     +++ TA+      A           
Sbjct: 731  VDGVFPTGVRNTTGWLTSAHLLPWPLRGDRDALPSIDMTTADDQSAVVALLKDFAEAVKC 790

Query: 686  HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
            H         ++  TR+ R         RW         + F             WT   
Sbjct: 791  HALAEERRLAYVAVTRARRWLF--CTGYRWDDTTRAHADSAFLTGDVLGAMRVECWTPVP 848

Query: 746  DYTTKQPHY---KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD-------- 794
            D  T  P      R   +P      R         L+ D  AV    +   D        
Sbjct: 849  DDGTANPRLVDGPRRVAWPVDPLGSRRPQVERAAALVRDAVAVAGEPMSGRDDGSAEALT 908

Query: 795  --FIPHFKKDPDRTDRGTLFHNIITELIKKRINKN---------------------TPEI 831
                    + P    +         ++      ++                       E 
Sbjct: 909  GGEAEPRPRTPIPATQWEQVDGWSRDIAVLLAERSRATEQSAVVLPEQLSVTQLVALRED 968

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHK---ISHSFLE------------------- 869
                   +        +P        H + +    +   L+                   
Sbjct: 969  PSRFAARLRRPLPNRPVPSARRGTAFHRWLEQRFAAPRLLDVDELPGAADSDAAPDDELE 1028

Query: 870  -----HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924
                   E   +S   + V +P  + ++     + G  D +     G   I D+KTG  P
Sbjct: 1029 ALKTAFLESHWASRHPVDVEVPFHLVVDGR--VIRGRMDAVFADPDGGFTIVDWKTGRRP 1086

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
            +     +    QL     A      S +   +V    +  L+            ++   +
Sbjct: 1087 RG-EYAEAAAVQLGAYRLAWSE--LSGVPLERV-RATFCYLRDGGDYAPADLLDRRGLME 1142

Query: 985  ELSEKSL 991
             L+ ++L
Sbjct: 1143 LLAARTL 1149


>gi|301165556|emb|CBW25127.1| ATP-dependent DNA helicase [Bacteriovorax marinus SJ]
          Length = 752

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 77/693 (11%), Positives = 189/693 (27%), Gaps = 119/693 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     + +A +E+R     +       L  I +          ++             
Sbjct: 55  QVLALTFSNKAAREMRDRIGSMVEADVGAL-QITTFHAFCARILRSEAN--------YLG 105

Query: 106 IQRLLELA---RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           + R   +        + +  L          SP  +     +       L   I   + E
Sbjct: 106 LSRNFTIYDTSEQKAVVKAILGRHGISTKEVSPFEVLYYMDDLKNHGHYLGRDISECDYE 165

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-- 220
                    +              F     + +   L + NA         +++   +  
Sbjct: 166 ---------IDQGD---------SFFT-FYQEYEAELHKANAVDFGSLITGVIQLFEKFP 206

Query: 221 ---HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     +++     +  A   L+  ++       V+   D       W     +
Sbjct: 207 DVLKRYQERFKYLLVDEYQDTNRAQFELVKMLSEQNRNVCVV--GDEDQSIYSWRGADIR 264

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +        + +          +  L+      K +   +  +  R+             
Sbjct: 265 NILDFEEVFSDAK---------ILKLEQNYRSSKNIIEAATHVIARN------------- 302

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITAD 395
               +      +        D+ ++E  N++ E   +A  +R    E    K+ A+    
Sbjct: 303 ----SQRKGKDMWTNNPHGEDIDIVECFNDKTEGEFVAQKIRELSKEGHPFKEMAVFYRT 358

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L +  I   +  G+          L + +  +    D +A++ ++  P  
Sbjct: 359 NTQSRLIEDNLRKNNIPYRVVGGVKFYERKEIKDLIAYMRIVVNEKDSLALSRIINVPAR 418

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G         +                   L  ++   +A  +N  H+          
Sbjct: 419 GIGATTLRKLENEAVTNN------------CSLWEMLDTVVANPENYKHI---------- 456

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                  L   +   ++ LVT       +  N++ S   +      ++   D  +   + 
Sbjct: 457 ------RLSAKVKSALSHLVTLINEVRVSVDNVAPSSLYEKL--LHESGYWDFLKSSKDY 508

Query: 576 WFEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
             +   + L  L + I++     K  + + +++ IT  +D        E +  + ++   
Sbjct: 509 ESQARMENLEELQNAIVQYEESNKSPSLLNFLETIT--LDTSGEGDNPENTGEVSLMTIH 566

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-- 692
            ++ L F  + + G  E ++P   +              L+  E  I +    F +A   
Sbjct: 567 GAKGLEFLHVFVTGAEENIFPSYKS--------------LENGETAIEEERRLFYVAMTR 612

Query: 693 GTRHLIYTRSLRE----NNIPTIASRWLQRLLV 721
               L  T +              SR+L  +  
Sbjct: 613 AMEKLYITFAQGRMLFGQLRFNGPSRFLHEIPN 645


>gi|21328716|gb|AAM48722.1| helicase, UvrD/Rep family [uncultured marine proteobacterium]
          Length = 1118

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 75/813 (9%), Positives = 191/813 (23%), Gaps = 114/813 (14%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAG 234
               DF       +  R             +      ++  +              I++  
Sbjct: 334  ALYDFAAEFLGTYRARKQARGFLDFNDLIMRTRHLLSDERVATWVLFRLDGGIDHILVDE 393

Query: 235  STGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
            +  + PA   ++  +A                +    D       +        +     
Sbjct: 394  AQDTSPAQWDVIRLLAQEFTSGEGARADVPRTIFVVGDKKQSIYSFQGADPDGFDRMRDQ 453

Query: 286  TTYSTH----------PQYSLAKLLDFLDIKREDVKRLGNV---------SNEMYGRSMV 326
             +   H            YS       L +  +       +           ++ GR  V
Sbjct: 454  FSQKLHEIDQPFQSTTLDYSFRSSSAILGVVDQVFANRSGLGSGSAHLAFKADLPGRVDV 513

Query: 327  ISKSFLPPDTSDMRNTDILENKIPN-----IQKCFSDV--ALIEADNEREEAISIAIALR 379
                  P  T   +  D ++    +     +    +     LIE +   +   + A   R
Sbjct: 514  WPVFQAPDKTEPHQWMDPVDEVSTDHQDKQLADALAGHICDLIETETLTQLDATGAAFQR 573

Query: 380  MSLDENKKKSALIT-ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                       L+    + L R +       G+ I  +  + ++  L    + SLL  + 
Sbjct: 574  KI--TAGDFLILVQGRQKLLFREIHRACKEAGLPIAGADRLKVAAELAVRDIRSLLAFLA 631

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
               D +++A  +K PL  +   E +             R  +N  +        L  +  
Sbjct: 632  LPEDNLSLAEALKSPLFGWSEQELFDLAQGRDS-PFLWRSLQNREEEFPNTVQRLTELRD 690

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
              +          +       + LL     +    +    +   +               
Sbjct: 691  LADFKRPFELIEHILTTYGGRSALLGQLGPEAAEGIDALVSQSLAYER------------ 738

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                      +     +W + +   +      + +    +  +  + ++    ++     
Sbjct: 739  ------SNIPNLTGFLVWLDADDLEIKRQMDSVGDKIRVMTVHGAKGLEAPIVILPDTAP 792

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
            +   +    +                             +     +   +QS L  K  +
Sbjct: 793  RKAPKLPEVV---------------------PHNTIAVWSPNKDLIPAALQSSLKDKQRQ 831

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR-WLQRLLVLGGTDFFDNLKKRGQC 737
            +   +    +         +      +           +Q  +   G    + +   G  
Sbjct: 832  QEEERDRLLYVAMTRAESWLIVMGSGDIKEGKECWHNAIQDAISALGAAPLNTVAGLGLR 891

Query: 738  Y-LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
            Y          +         +  P           ++       P  +   ++L     
Sbjct: 892  YEPMQWSAGPQSDPVQPQVMKQSVPSWAIPYTK--PAQAPAAPRSPSDLGGDKVL---PG 946

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
               +   +    GT  H ++  L     ++           I     E +          
Sbjct: 947  GAPQDAENAKRLGTAVHRLLEVLPNAPQDQWGH--------IAQRLVEADIQAAAFQE-- 996

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-GIHLTGFADRIDLLKSGFVDI 915
                   + + L+  E       +    +     +  + G  + G  DR+ +  +  V  
Sbjct: 997  -------ARAVLQKPELAYIFAPESLAEVDISAHLPELNGDPIQGSIDRLLISPT-RVLA 1048

Query: 916  TDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
             D+K+      +       +  Q+   AAAL  
Sbjct: 1049 VDFKSNQIVPSEVAQVPSGLLRQMGAYAAALSQ 1081


>gi|300088001|ref|YP_003758523.1| UvrD/REP helicase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527734|gb|ADJ26202.1| UvrD/REP helicase [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 747

 Score = 99.6 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 78/752 (10%), Positives = 185/752 (24%), Gaps = 115/752 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E++    E     S     + +   +       +             
Sbjct: 53  RIMAVTFTNKAAREMKERL-EKLAPGSVKDITMGTFHAICAGILRKEGQAI--------G 103

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           I R   +          L    +++  +       + + AI  AK+       ++T    
Sbjct: 104 IAREFVIFDADDQ-EKLLKRSAEEIGVDPKKFPLKTISGAISKAKS------GMQT---- 152

Query: 166 WEDLHALKNEKYGMWWLLAADFL-KIASKYWTERLVELNASSPVGYQIALM-----RAEA 219
                    E +        + +     + + + L   NA       +  +     R E 
Sbjct: 153 --------PEMFREKAHSYLEEIVGRMYEQYEKMLRANNALDFDDLLLKTVFLFQRRPEI 204

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +      L+  +A H     V+   D       W     ++ 
Sbjct: 205 LKRYQERYVHIMVDEFQDTNLVQYELVKLLAGHYRNIAVV--GDPDQSIYSWRAADLRNV 262

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +    +                           + +       SK          
Sbjct: 263 FNFEKDFPDRS--------------------------VHYLEQNYRSTSKILEAASGIIA 296

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISI---AIALRMSLDENKKKSALITADR 396
            N    + K+         + ++EA NE+EEA  +   A  L  S        A++    
Sbjct: 297 HNQKRKDIKLWTENGSGEPLCILEAYNEQEEAQMVVREAEKLSASGQYKLSDMAVLYRTN 356

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++    R+G+   + AG           L +    I    D +++  ++  P   
Sbjct: 357 AQSRVLEEYFIRYGVPYKLVAGTRFYERREVKDLIAYFRLIHNPADSVSLMRIINVP--- 413

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                         L   ++             + + +    Q  +       S    E 
Sbjct: 414 -----------ARGLGDKSI-------------ADLQNWARGQGLSLFEALAASAGEGEK 449

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
             L+   +         + ++              +  + T             +     
Sbjct: 450 PPLSARAIGAFASFYRMVESFIQAAAEKSLTELFDEILERTG-----YRAFLEAQPDGQE 504

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             E    L ++  +          +       +  +     +    E    + ++   ++
Sbjct: 505 RMENIAELHTVAEQFAALPPGEALSP-----FLESVSLVSDIDNLDETEGGVTLITLHQA 559

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + + GL E V P   + +       +  L      +   +       A     
Sbjct: 560 KGLEFPVVFIVGLEERVLPHFRSLDDPAQMEEERRLCYVGVTR--ARERLYLLRAFR--- 614

Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
               R+L   ++    SR+L+ +      +       +       T      +  P   R
Sbjct: 615 ----RNLMGGSMLNDPSRFLEAIPN----ELTTGTLPKAPPVHARTGASSPRSAPPTIGR 666

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                           S+ +     P     +
Sbjct: 667 VGTPSTGRPPVSAGGPSQTRVPAGKPAVAPYK 698


>gi|145295025|ref|YP_001137846.1| hypothetical protein cgR_0969 [Corynebacterium glutamicum R]
 gi|140844945|dbj|BAF53944.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 763

 Score = 99.6 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 90/745 (12%), Positives = 210/745 (28%), Gaps = 98/745 (13%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +    RY  ++P     +     T +A  E+R    ++ G  +  +  + +  
Sbjct: 43  TAVLTRRIAYLMRYRGVHPQ---QILAITFTNKAAAEMRERVSQLVGPVAERM-WVATFH 98

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            V                         + + R        L         +    L    
Sbjct: 99  SVC------------------------VRILRQQAQLVEGLNTNFTIYDSDDSRRLLTMI 134

Query: 143 ANAIWL------AKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYW 195
           A  + L      A+ L   I  ++ E     E L   +        ++A  F       +
Sbjct: 135 AKDLELDIKKFSARTLLGAISNLKNELVTPQEALADAERTHNPYETVVARAF-----SEY 189

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVA 250
             RL   NA          +R   EH       +     ++I     +  A   L+ST+ 
Sbjct: 190 QSRLRRANAVDFDDLIGETVRIFREHPPVAEYYRRRFRHVLIDEYQDTNHAQYELISTLV 249

Query: 251 NHPN--GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
             P+   + +    D       +   T ++      + +               L+    
Sbjct: 250 GKPDQDPSELCVVGDSDQSIYAFRGATIRNIEEFERDFS---------NARTILLEQNYR 300

Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
             + + + +N +  ++       L     +                    +    ADNE 
Sbjct: 301 STQTILSAANAVISQNENRRPKNLWTALGEG-----------------EQIIGYVADNEH 343

Query: 369 EEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
           +EA  IA  +   +D   N    A++    N +R ++    R G+   +  G        
Sbjct: 344 DEARFIASEIDNLVDHGMNYSDIAIMYRTNNSSRALEDVFMRTGVPYKVVGGTKFYERKE 403

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              + + L  +   +D + +  ++  P    G   +      +    ++           
Sbjct: 404 IRDIIAYLRVLENPDDTVNLRRIINTPKRGIGDRAQAFIALHSENNQISF---------- 453

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
             ++L+   +                  E  +     +  ++  +T L       +    
Sbjct: 454 -GQALLDAGLGKIDLLGARGKNAVIKFNELFDALRTELPTMVNEVTGLPDIGQVISRILD 512

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                   + +        LD   +L ++  E      + + ++ +  G     +   ++
Sbjct: 513 ITGYKAELEASNDPQDGARLDNLNELVSVAREFSSDAANRMVNE-VPEGEAQPGSLQAFL 571

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
           + ++ + D + +      +  + ++    ++ L F  + L G  +G +P   +       
Sbjct: 572 ERVSLVADADQI--PDSDNGVVTLMTLHTAKGLEFPIVFLTGWEDGQFPHLRSLGDAKEL 629

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
             +  L      +   +      M          RS   N +    SR+LQ +       
Sbjct: 630 AEERRLAYVGITRARKRLYMTRAML---------RSSWGNPVTNPPSRFLQEVPAELIDW 680

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQ 751
             +  +         TR +   T+ 
Sbjct: 681 RREEPQMSSAWAPRPTRSIPTKTRT 705


>gi|85711557|ref|ZP_01042615.1| Exonuclease V gamma subunit [Idiomarina baltica OS145]
 gi|85694709|gb|EAQ32649.1| Exonuclease V gamma subunit [Idiomarina baltica OS145]
          Length = 1150

 Score = 99.6 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 96/909 (10%), Positives = 227/909 (24%), Gaps = 84/909 (9%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           L + T +     +      L   T+ V +    Q L+    +  G  S     +  +   
Sbjct: 16  LEDLTDIAVNFIERFPLAPLEQETVLVQSNGIAQWLKINLAQHAGIAS-----MIDVTLP 70

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              ++ A   +  +  P  S   +     RL+ +  + L    +    ++ ++  +    
Sbjct: 71  ARFQWQAYRAVLGDDIPRTSPFDKARLSWRLLRLLPDVLEQDARFTPLKNYIANDLDNRK 130

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
              L++ LAD+ D        W D + L            A+      + W     ++ A
Sbjct: 131 LYQLSERLADLFDQYAIYRADWLD-NWLNERDVLDNDEPVANEHAWQPELWRRVANDIGA 189

Query: 205 SSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMSTVANHPNGAIV 258
                 +  L +   +      + P      I++ G +        ++  + +     + 
Sbjct: 190 EHLWNNRATLHQQFIKSARALNQRPATIPPRIMVFGISSLPQQMLEVLDALKHLSQIVLC 249

Query: 259 LPGLDCHIPTAIWNTITE-----------KSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
           +          I +   +                           Q +   L  +    R
Sbjct: 250 VHNPSKFYWADIVDGKEQLKQVVKAKSRLAHKPGMPLEWNDEELHQLAHPLLASWGKQGR 309

Query: 308 EDVK--RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN------------KIPNIQ 353
           + ++   L + S +       ++        ++     + ++                + 
Sbjct: 310 DYIRLLDLYDESIQKQAELGHMTLELFESHATEHVLGQLQDDILNLRPLHETQQHWSPLS 369

Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL--- 406
                V      + + E   +   L  +  E+     +   ++  D +        +   
Sbjct: 370 VQDQSVQFHICHSPQREVEVLHDRLLAAFAEDPTLKPRDVMVMLPDVDTYAPYIDAVFGR 429

Query: 407 --------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL---- 454
                       I   I+             L  LL++         + TL+  P     
Sbjct: 430 YARDGNGQDTRAIPYTIADQTSRHRAPLLIALELLLSSDQLRFTQTDLLTLLGTPAIQRQ 489

Query: 455 AKFGFPEKYLSRAK------NALELVALRGNKNSYDIMDLKSLV-----LDRIATQKNNT 503
                 +    R                R      D  +  S       +    +     
Sbjct: 490 FNIDDDDVEQLRTWMTNAGGRWGLSAEHRKLFFMPDDDETNSWWFAIKRMMAGYSIGYAE 549

Query: 504 HVPHWQSRLSEEDKELA-VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
               WQ   +  D       LV      I  L  +  +          SDW  +    + 
Sbjct: 550 VESDWQDIAAYTDIGGLGADLVGRFGYFIEQLERWWDDSREARTY---SDWLPIAEWLID 606

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                E      L   +    L  +   + E  +  + N   + +     +D + +  + 
Sbjct: 607 TFFESEEASDALL-KNQILDQLYQVAEHVDEADNKTELNIALFRESWLSRVDEQNLNQRF 665

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
              + +     +  R + F  + + G+NE  +P+NT++  F     +     ++      
Sbjct: 666 LAGA-VNFATLMPMRAIPFKFVAILGMNESDYPRNTSQIDFDLMASRYRPGDRSRRDDDR 724

Query: 683 QAAHDFEMANGTRHLIYTRSL---RENNIPTIASRWLQRLLVLGGT----DFFDNLKKRG 735
                 E     R + Y   +     +N     S  + +L          D  ++     
Sbjct: 725 Y--LFLEALLSARDVFYVSWVGFSARDNSARTPSVLVAQLREHLQQGWHSDLSEHTLAHK 782

Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL-- 793
               +     D +    +           +   + S   +   + D   V    I +   
Sbjct: 783 LQPFNRAYFDDSSRVFSYASEWAQAHDSVSHQSSSSSVALTDDLADERTVNLNDIKRFVQ 842

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
           +    F      T         I     +       ++   +         KE  P    
Sbjct: 843 EPARLFFNSRLETYFSVDADETIDREAFQLDALTEWKLLQRVVDKTREAVRKELEPEQQM 902

Query: 854 IIWRHLFHK 862
                   +
Sbjct: 903 HEELARIRR 911


>gi|326387825|ref|ZP_08209431.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207871|gb|EGD58682.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 1159

 Score = 99.6 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 96/883 (10%), Positives = 213/883 (24%), Gaps = 80/883 (9%)

Query: 93   LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP-ESPLSLPISPANAIWLAKN 151
                         ++R L        +   L     D       +   +     +  A  
Sbjct: 283  AASPEERAVSFDALERALFTKESTPKYAKNLEKQDPDYVSHAEDVGEALEAVRDLVRAFA 342

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
            LAD++D   T   ++    A +  K    ++   D ++ A+   TER         +  +
Sbjct: 343  LADLLDPALTVGCRFAR--AWQEAKDREGFIDFDDQIRAAAALLTERAPADWIRFKLDRR 400

Query: 212  IALMRAEAEHLMKGTKGPIIIAGSTG-------SIPATARLMSTVANHPNGAIVLPGLDC 264
               +  +        +  I++ G TG            AR +  V ++        G   
Sbjct: 401  FDHVLVDEAQDTNAAQWRIVLDGLTGDFFTGAGKETDGARTLFVVGDYKQAIFRFQGTSP 460

Query: 265  HIPTAIWN-----TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
                          ++        +          S       L      +  +G     
Sbjct: 461  ENFDRARRRVENELLSLARMADDPTLELLDLGLGRSFRSSQTILSFVDRAIAGIGPARLG 520

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
            +     +     LP   +  +   + E      +          A  +RE A  IA  +R
Sbjct: 521  LAAAPELHEGQILPGLVTLWQPVGLGETAELGAEDDTGGDEGWLAGTDRELAARIARQVR 580

Query: 380  MSLDE-------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
              LDE                   L+    +LA  +   L   G+ +     + L   L 
Sbjct: 581  QWLDEGFSLSKGRHRRATPGDVMILVRKRGDLAGLIVARLHAEGVPVAGVDRLRLGAPLA 640

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
               + + L    +  D + +A L+  PL  +   +      +     +            
Sbjct: 641  VKDMIAALTFCVQPGDDLNLAGLLVSPLIGWSQQDLLAHGYRGKGVPLWDHLRATENAQT 700

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
                  L  + ++ +        + +     +    LV  +       +    N      
Sbjct: 701  HGALTRLRELLSRADFAPPAALLTWILVGPWQGRKALVARLGAEANDPIDELLNAAMAYA 760

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
               +                 +     N                  +    +  +  + +
Sbjct: 761  TAHVPSLAGFLHWFAAGDGDVKREAGGN-----------------ADLVRVMTVHGSKGL 803

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
                 ++      P   + + + ++                   E   P    +      
Sbjct: 804  QAPIVILADAADDPGKSRPAPVVLMDDG----------------ERAVPLPPLRKDEKPL 847

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS--LRENNIPTIASRWLQRLLVLGG 724
             ++S   +   E+        +         ++        +        W   L  L  
Sbjct: 848  PVRSAEEIARREEREEHWRLLYVAMTRAEEALFVTGSLGPRDKGEVPEESWYAELARLLP 907

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
            TD         + + +    L     +     P P   L  +       E + L     +
Sbjct: 908  TDGGLEDPIWTRRWEEGA--LAPLPPKDPATGPAPSVVLPDELVRAIAPEPRPLRPLAPS 965

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                               +   RGTL H ++  L               ++++      
Sbjct: 966  ALGEDEAPAPPTRPGPGARNAARRGTLLHRLLERLPDLAPEARAASAMAWVRRMATD--- 1022

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                   +    +      + + L + E            +P    +      + G  DR
Sbjct: 1023 -------LPENEQAGLVDAALAVLTNPEWQDVFGPGSLAEVPIAALVGPR--LINGTIDR 1073

Query: 905  IDLLKSGFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAALK 945
            + +     V I D+KT   P    +        Q++   AA++
Sbjct: 1074 LLITA-QAVRIVDFKTDRRPPEDLDAIPTAYLRQMAAYVAAMR 1115


>gi|88703287|ref|ZP_01101003.1| UvrD/REP helicase family protein [Congregibacter litoralis KT71]
 gi|88702001|gb|EAQ99104.1| UvrD/REP helicase family protein [Congregibacter litoralis KT71]
          Length = 1107

 Score = 99.6 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 92/915 (10%), Positives = 205/915 (22%), Gaps = 102/915 (11%)

Query: 60   LRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIW 119
            L+  F             + +L D  E+     LL S + +   S       L      W
Sbjct: 232  LQERFAAHMQ-------QLITLMDYREQNLKRGLLFSGDCSDLASWRGVAALLLTGKGEW 284

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179
            R  +   ++D +P          A  + L   L +  D     E +   L     +    
Sbjct: 285  RKTVT--VRDGFPAGKGEPAELKAQMLALLSTLREEDDGALLGELRQVVLLP-DVDDEPA 341

Query: 180  WW---LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKG 228
             W   +     L            +          +A + A             +  +  
Sbjct: 342  HWDVLVAVTRLLPRLGAELLLVFQQKGEVDHAQIAMAALDALGTDREPTDLALRLDHSIE 401

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGA---------IVLPGLDCHIPTAIWNTITEKST 279
             +++     +      L+  +    +            +L   D       +        
Sbjct: 402  HLLVDEFQDTSSVQFELIRRLTRGWHEHNEANPQGPRTLLLVGDAMQSIYGFREANVGLF 461

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +           L+     L +     + L   +N  + R                
Sbjct: 462  IRARNEGVG------DLSLTPLDLQVNFRSQQGLVEWTNAHFQRGFPQVDDAQLGAVQFR 515

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM-SLDENKKKSALITADRNL 398
                            F+         +  E  ++   L      ++ +  A++   R  
Sbjct: 516  EAIAARAPDEAPEFALFTGD-----GGQAAEIEALCDKLAEGVARDDVESIAVLGRSRTQ 570

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
             R +   L    I++       L+       L +L   +    D  A  +L++ P     
Sbjct: 571  LRPILAALRARDIDVAARDLDTLAQRPLIRDLLTLTTVLCDRFDRFAWLSLLRTP--AIA 628

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                 L R  +     A   ++       L+++             +  W       D+ 
Sbjct: 629  LDNADLLRMASHCPTAADFRDREITRDTALQAVSRPGQQRLGQLQKLLAWADHYK--DRL 686

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
               + V+     +    +  ++              +        +            + 
Sbjct: 687  ALRVWVEECWLFLGGAASLASDA-DLRDTERFLQCLEELEVDQAPLNGRSLATAVEALYA 745

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
              G     +    +     ++ + +    +                       G  +  L
Sbjct: 746  SPGDERCKVEVMTLHKAKGLEFDWVFIPALAKS-------------------TGGQDKEL 786

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
            L +D  +L G            +  L     ++              +    A   R   
Sbjct: 787  LLWDEFVLPGA---------PPSFLLDIRDTAEGGANPR-----LYDYLKAQAKQKRDYE 832

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
              R             WL   L         +    G         +++     H    +
Sbjct: 833  AARLFYVGCTRAADYLWLGAALSFSEAKDSYSPPGSGSLLSVIWPSIEHQASVTHVSLDE 892

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                              +L   P             +    ++      GT  H  I  
Sbjct: 893  DAVDAPTLGYR-------RLRELPDIAVVAANSPASPLE-LSENYLARALGTAVHRCIEA 944

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-- 876
            LI     +     +  ++ ++     +                 +    L       +  
Sbjct: 945  LI--YKPELPECCDEKLRGLLRVALIEAGADRQALPELVLEGASMLDRLLGDSWARWALS 1002

Query: 877  -SIEKIFVNIPAKMAIESIGIHLTGFADRIDLL----KSGFVDITDYKTGDNPKKETAQK 931
                +    +P  +A  +    L      +D      ++G   + DYKT      E  ++
Sbjct: 1003 AQRRERAAELPLTIATGTGAQQLI-----LDYSFLDEEAGERWVIDYKTAIPGPGEDVRQ 1057

Query: 932  LIDPQLSLEAAALKA 946
             +  QL      L  
Sbjct: 1058 FVMAQLESYGEQLAR 1072


>gi|313115010|ref|ZP_07800502.1| hypothetical protein HMPREF9436_02367 [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622664|gb|EFQ06127.1| hypothetical protein HMPREF9436_02367 [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 693

 Score = 99.6 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 64/611 (10%), Positives = 142/611 (23%), Gaps = 71/611 (11%)

Query: 153 ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
           A  ID +++       L  L  +            L +  + +   L       P     
Sbjct: 120 AQTIDELKSAGLSGAQLSELAPDCGPE--SGKLSELALIFQGYETLLAGTG-MDPADRLE 176

Query: 213 ALMRAEAEHLMK------GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                    L +        +  + I           RLM  +        V    D   
Sbjct: 177 LAADRLEAALARGELPDFLREREVFIDEFDTFNAPKKRLMGAMLAALPTVTVALCDD--- 233

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                               + +      L +L           + L             
Sbjct: 234 --------GAPMVPGDMGLFSGAKQVAAQLRQLARKNGTDAAVPELLRRDLRHKDA---- 281

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
                          T++LE     +     +V L  A +  EEA   A A+R  + +  
Sbjct: 282 ---------PGLAAVTELLETGTCEVPPAAPEVRLFAAASREEEARCTAAAIRRLMRQGV 332

Query: 385 -NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
              K + +     +    ++ E     I +          +  ++ + +LL  +   +  
Sbjct: 333 RCGKMAVVCRNIPDYRAAIRYEFRMADIPLYCDEPTTPEFSAPATAVRALLALLRGADMT 392

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS----YDIMDLKSLVLDRIATQ 499
             +  L K  L     P+                  +              L  +   T 
Sbjct: 393 ENLTILAKTGLCALTEPQVCALENYAYTWSPNAAAWRTKFEKSPKGFGENELSDEDAKTL 452

Query: 500 KNNTHVPHWQSRLSEEDK-----ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
           ++            +E +       A  +   +  C+  L   +          +     
Sbjct: 453 EDAETARQLLVTAVDELRSKVRGGSAEQISRELYFCLKKLGAEEQQAALVEAVRTARGIP 512

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                  +                     +  L +++            E+ D+ + L+ 
Sbjct: 513 AAEEAARE------------------WNVVMQLLNEMAHLLGGQGVTFAEYEDLFSLLLR 554

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ----- 669
              +    +    + +    + RL   D + + GL EG +P   ++   L+   +     
Sbjct: 555 SSDLGHIPQTLDAVVLASAGKMRLDAPDYVFVLGLAEGEFPCAPSETGLLTHADRDVLMA 614

Query: 670 SDLNLKT-AEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
             ++L    E  + +       A       L  +    +      A   +   L     +
Sbjct: 615 KQIDLPDCFENRVVREQVCVYKALTAPAKGLWLSWPKGQGKTLCAALEPIVEALHPAAPE 674

Query: 727 FFDNLKKRGQC 737
                      
Sbjct: 675 LELPDLAATPA 685


>gi|150014905|ref|YP_001307159.1| ATP-dependent nuclease subunit AddB [Clostridium beijerinckii NCIMB
            8052]
 gi|251764545|sp|A6LPC3|ADDB_CLOB8 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|149901370|gb|ABR32203.1| ATP-dependent nuclease subunit AddB [Clostridium beijerinckii NCIMB
            8052]
          Length = 1159

 Score = 99.6 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 85/254 (33%), Gaps = 35/254 (13%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK--- 826
            +S S++++    P++ + +  LK         +    D G+  H ++     K       
Sbjct: 776  FSVSKLEKYAECPFSYFVQYGLKAKNRK--VYEFTPPDLGSFVHEMLDSFTNKVREDGVL 833

Query: 827  NTPEINHLMKQIIDSHFEKENLPPH--------IDIIWRHLFHKISHSFLEHEEKI--QS 876
             +   N   K+II +  +K+ +                   F ++    +        + 
Sbjct: 834  WSDLSNEKCKEIISNLIDKKLMDESNSILNSTKKFKYLAQRFKRVISKSVSVIASQIGKG 893

Query: 877  SIEKIFVNIPAK-------MAIESIG---IHLTGFADRIDLLK-SGF--VDITDYKTGDN 923
              E                + ++      ++L G  DRID L   G   + I DYKTG  
Sbjct: 894  EFEVFKTEFDFGSYSSGEAITLDLNDNEKVYLQGRIDRIDKLDLDGETYIRIIDYKTGAK 953

Query: 924  P-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
                      +  QL +   A +K   +      K   + Y ++      D I   KK+ 
Sbjct: 954  KFDLNEIYYGLQVQLLVYLDALIKNSKYILDKQVKPGAILYFKID-----DPIIKSKKEM 1008

Query: 982  SADELSEKSLKNLI 995
            + +E+ ++ L  L 
Sbjct: 1009 TDEEVEKEVLSALK 1022


>gi|291447590|ref|ZP_06586980.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350537|gb|EFE77441.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 1201

 Score = 99.6 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 87/817 (10%), Positives = 201/817 (24%), Gaps = 74/817 (9%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90
               +    V     T +A  EL     +         P +       G+        F 
Sbjct: 67  GTGQVAPEQVLGLTFTNKAAGELAERVRKALIAAGVTDPDVIDPDNPPGEPTISTYHAFA 126

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL  + L   +    RLL  A        K+       YP    S     ++ + L  
Sbjct: 127 GRLLTEHGLRIGLEPSTRLLADATRYQ-LAAKVLREAPGPYPALTRSFSTLVSDLLALDG 185

Query: 151 NLADIIDIIETEEK-KWEDLHALKNEKYG-------MWWLLAADFLKIASKYWTERLVEL 202
            L++ +    T E    E L  L   K              A   L   ++ +       
Sbjct: 186 ELSEHLVRPGTLEAYDTELLRELAAAKLSNADLRKIPEAAEARRSLLGLTERYRTAKRSR 245

Query: 203 NASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH----- 252
           +              AL R E   +++     +++     +  A   L+S +        
Sbjct: 246 DLLDFGDQIALSAELALTRPEVGRILREEFRVVLLDEYQDTSVAQRLLLSALFGSGGTGS 305

Query: 253 ----------PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
                       G  V    D       W   +  + +    +  ++     +   L   
Sbjct: 306 GGSSGGTDPGAAGHAVTAVGDPCQAIYGWRGASVANLDDFPEHFPHADGTPATRYSL--- 362

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                         S        ++  +    +     +  +   +     +    V   
Sbjct: 363 --------------SENRRSGGRLLQLANGLAEPLRAMHEGVEALRPAPGAERDGMVRCA 408

Query: 363 EADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
                 EE   +A +L   +       + A++         ++  L    I +++     
Sbjct: 409 LLSTHTEEIDWLADSLAHLVRTGTPPGEIAVLCRTAGDFPEIQAALVARDIPVEVVGLAG 468

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
           L      + L ++   +       ++  L+  P  + G  +  L   +  L +       
Sbjct: 469 LLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRAGRAD 528

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
           ++     L   V      +  +         ++ +  +  +            L     +
Sbjct: 529 DADADRRLAEAVEGTDPAEVISLADALDTFLVAGDAADDGLPFSAEARVRFARLARELRD 588

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
              +  +  +    ++  T    V L    +       E       + ++          
Sbjct: 589 LRRSLADPLMDVLHRILATTGLEVELSASPQALAARRRETLANFLDIAARFASFDGEASL 648

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            A           +           +T+ +L   +S+ L +D + + GL  G +P   ++
Sbjct: 649 LAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGQFPSGQSR 708

Query: 661 NPF------LSRVMQSDLNLKTAEK----------YIGQAAHDFEMANGTRHLIYTRSLR 704
           + +      L   ++ D     A                  H         ++ +TR   
Sbjct: 709 DAWTAQAKVLPHALRGDAATLPALDSFDAKGIKAFKEEMKEHQHTEELRLGYVTFTRPRS 768

Query: 705 ENNIP---TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
                      S+   R         +++          W  +     + P         
Sbjct: 769 LLLGSGHWWGPSQKRTRGPSAFLEALYEHCAAGHGEIEAWADEPAEDEENPALAERDADL 828

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                    + +  +   +   A   R  ++ D    
Sbjct: 829 AWPLPLDADALARRRAARDTVLAHLERMAVQGDEPEP 865



 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 81/770 (10%), Positives = 183/770 (23%), Gaps = 52/770 (6%)

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
            IP     ++ + + P  A ++   +         ++    T                 A+
Sbjct: 459  IPVEVVGLAGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRAR 518

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP---NIQKC 355
            LL     + +D      ++  + G       S      + +   D  ++ +P     +  
Sbjct: 519  LLVHRAGRADDADADRRLAEAVEGTDPAEVISLADALDTFLVAGDAADDGLPFSAEARVR 578

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
            F+ +A    D  R  A  +   L   L     +  L  + + LA R +  L  F      
Sbjct: 579  FARLARELRDLRRSLADPLMDVLHRILATTGLEVELSASPQALAARRRETLANFLDIAAR 638

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
             A      +L + +      A ++     A+               K L     A+  + 
Sbjct: 639  FASFDGEASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLV 698

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                 +        +         + +            +  +     +          +
Sbjct: 699  TGQFPSGQSRDAWTAQAKVLPHALRGDAATLPALDSFDAKGIKAFKEEMKEHQHTEELRL 758

Query: 536  TYKTNKNSTCGNLSISDW-------TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
             Y T        L    W       T+     L+ +          +    +        
Sbjct: 759  GYVTFTRPRSLLLGSGHWWGPSQKRTRGPSAFLEALYEHCAAGHGEIEAWADEPAEDEEN 818

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
              + E  + +        D + R            +   +       +     D +    
Sbjct: 819  PALAERDADLAWPLPLDADALARRRAARDTVLAHLERMAVQGDEPEPAYGPGPDDVPAHE 878

Query: 649  LNEGVWP---KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
              +   P       ++     +          +                 H         
Sbjct: 879  PWDEEPPLDEPPADEDWDWDALPTERPAEPVPDMAPEPVRERAPAPEAAPHTEPAPDPAS 938

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDN------LKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
               P I +    +                    +  +    W R LD    +   +R + 
Sbjct: 939  EPTPHIPAARHPQEDPAARHAPETTDPADRLTPEEARTLASWDRDLDSLAGE--LRRARA 996

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                   P   S +++ +L  DP A  A+ + +    P          RGT FH  +   
Sbjct: 997  TVREVVIPAALSATQLLRLAEDPDAF-AQELARPMPRPPQ----PAARRGTRFHAWVESR 1051

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
             ++                 D+    E     +                  E    +   
Sbjct: 1052 YEELPLPMLGPDELPGGDESDAEIADERDLAELKE--------------AFERTAYARRT 1097

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
               V  P ++ +      + G  D +        +I D+KT  +   +        QL++
Sbjct: 1098 PYRVETPFQITLAGR--VIRGRIDAVYRTGD-TYEIVDWKTTRHRTADP------LQLAV 1148

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
               A        +D        ++ ++    +       +      L ++
Sbjct: 1149 YRLAWAELHDLPLDAVT---ATFLYVRTGETVHPQGLPGRADLERILLDE 1195


>gi|260577890|ref|ZP_05845821.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734]
 gi|258603984|gb|EEW17230.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734]
          Length = 1205

 Score = 99.6 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 84/703 (11%), Positives = 204/703 (29%), Gaps = 94/703 (13%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTIL---------PIIKSLGDVV-----EEKFTA 91
            +     T++A  EL     +     +            P  + L ++       + +  
Sbjct: 70  QILGLTFTRKAAAELGERIRQRLQTLAGSAFMDQLSADDPRREVLKNIAPAVATYDSYAG 129

Query: 92  DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
           D++  Y L  P     RL+  A   ++ R+ + +    L  ++ +S     A+   L+  
Sbjct: 130 DIVREYGLLIPSEPAARLITDAERWMVARDVVINSGDSLTTQTAVSSV--IADVCALSDE 187

Query: 152 LADIIDIIETEEKKWEDLHALKNEK----------------YGMWWLLAADFLKIASKYW 195
           + + +  I   E++      L  E                 +        + LK+  K +
Sbjct: 188 MDNHLVGIAAVEQESAAAKKLLEELPKGPRSKKEFTDENTKFRDTQQYRIELLKLVQK-F 246

Query: 196 TERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVA 250
            E L E +  +             +H       +     +++     +  A   ++ ++ 
Sbjct: 247 RETLQECDLLTFGQQMSKAATLVRDHEVVGQDQRRRFRVVMLDEYQDTGHAQRVMLRSLF 306

Query: 251 NHPNGAI----VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
                       +   D       +   T  +     ++   +        +LL      
Sbjct: 307 GDGRAGEGSFSAMAVGDPMQSIYQFRGATASNLEKFRTDFPNAAGEPAEKLQLLTSWRNP 366

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
              +     VS     RS   +               ++    P       + A+   D 
Sbjct: 367 TMVLDMANRVSTWSMERSTEST-------------GRLVSELRPRPGATEGESAVAFFDE 413

Query: 367 EREEAISIAIALRMSLDENKK--------------KSALITADRNLARRVKLELTRFGIN 412
             +E   +A  L+    ++++               +A++      A  +  +L   G+ 
Sbjct: 414 REQELDWLADKLQSQWRDHQRKLETADDPAKVKPFSAAVLVTVNKDAVPIYEKLVERGVP 473

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            D++AG  L      + + ++L  +    D +A+  L+  P  ++      L+      E
Sbjct: 474 ADMTAGPGLLYIPEVADVFAMLRVLVDPTDDVALLRLLTGP--RWNIGAADLAVLTRRAE 531

Query: 473 LVALRGNKNSYDIMDLKSLVLDRIA-TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
            +A RG   +  + D       +          V         E    A      ++  +
Sbjct: 532 QIAKRGAGEAGAVDDAAMERQRQENIELLRTPGVRDELIEEVLEAIPNATEFSVGLIDAL 591

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN----------------------VCLDEH 569
             L   +    S  G+  ++   +      ++                      V    H
Sbjct: 592 ADLTDAEQMGMSAEGSRRLAQLGRELGYLRRHSLGKNLPDLVADIEKMLGVRTEVLTRWH 651

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
           R+             + +   +  TGS      +E++       DG        K +T+ 
Sbjct: 652 RRPEQAIGTSHLDKFAQIVRDVSRTGSATPKALVEYLLAAQSEEDGLDPGEVQRKDNTVQ 711

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           IL   +++ L +D + +   +   +   +      +  +++ +
Sbjct: 712 ILTVHKAKGLEWDIVAVPHASRERYGDYSQPRSESAWTIKARV 754



 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 58/238 (24%), Gaps = 30/238 (12%)

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                          L     L+       +        +       + +E   L  D   
Sbjct: 951  RPAPGATADGAPTTLAEAWDLETNLLLEEFSAMDNAELVVPLNVRMTATEAVSLRKDNQE 1010

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
               R   +   +           RGT FHN + E  K+    +  ++       ++    
Sbjct: 1011 FALRAR-RPIPLEPKPY----AKRGTAFHNWVEERYKQVSLLDEDQLPGASDATLED--- 1062

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                              +  +FL  E   +   +   V     + I        G  D 
Sbjct: 1063 -------------PYLETLKDAFLRSEWADR---QPESVEGAYSVTIGGHVFE--GRIDA 1104

Query: 905  IDLL---KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
            +       +    + D+KTG  P           QL++   A      +++     A 
Sbjct: 1105 VFHDGTDPTAGWIVVDWKTGRKPTGADMDAA-AMQLAVYRLAWAKLLSAKLGVEVPAE 1161


>gi|225023085|ref|ZP_03712277.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944308|gb|EEG25517.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 894

 Score = 99.6 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 93/723 (12%), Positives = 187/723 (25%), Gaps = 70/723 (9%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +    R   + P     +     T +A  E+R   I++ G  +T +  + +  
Sbjct: 125 TAVLTRRIAYLLRMRGVAP---GQILAITFTNKAAAEMRDRVIDLVGPTATRM-WVATFH 180

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                       L       +  +     +       +  L  I KDL   +    P   
Sbjct: 181 SACVRILREQAHL-------LPGLNTNFTIYDADDS-KRLLGMIAKDLQINAQKFPPRL- 231

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                    LA  I  ++TE    +            +       +      +  RL   
Sbjct: 232 ---------LAAAISALKTELTDPDAASDEAAATRNPF----DRTIAEVYTEYQRRLRAA 278

Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
           NA          +R    H       +     ++I     +  A   L+ST+    + A 
Sbjct: 279 NALDFDDLIGETVRVFTTHPEIAAYYRKRFRHVLIDEYQDTNHAQYVLISTLVGIGSDAS 338

Query: 258 VL-PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            L    D       +   T ++            +PQ     L       +  +     V
Sbjct: 339 ELSVVGDSDQSIYAFRGATIRNIEEFE-----RDYPQARTILLEQNYRSTQNILSAANAV 393

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
            +  +GR                      E K+       + +    ADNE +EA  IA 
Sbjct: 394 ISHNHGRR---------------------EKKLWTDHGAGAKITGYVADNEHDEARFIAT 432

Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +    D        A++    N +R ++    R GI   +  G           L + L
Sbjct: 433 EIDALFDTGVGYGDIAVMYRTNNSSRAIEEVFIRTGIPYKVVGGTRFYERKEIRDLIAYL 492

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
             +    D +++  ++  P    G               ++            + +L   
Sbjct: 493 RVLDNPTDEISLRRIINTPRRGIGDRAIATVNLYAENFGMSFADALVDAAHGKVTALGTR 552

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                     +       + E       L D I   ++ ++     K     +    D  
Sbjct: 553 AKNAIAAFLELMDGLRADAAEATNAITGLPD-IGVVVSRILDATGYKAELEASTDPQDGA 611

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           +L           E                    +   E              +    + 
Sbjct: 612 RLDNLNELVSVAREFSSEAANLMAYAAMGAGVEGNDPAEPMVGEPQPGSIHAFLEKVSLV 671

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
            ++ +   + ++ + ++    ++ L F  + L G  +G +P   A         +  L  
Sbjct: 672 ADSDQLPDDSTNVVTLMTLHTAKGLEFPVVFLIGWEDGQFPHLRALGDPQELAEERRLAY 731

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
               +          M          R+   N +   ASR+L+ +         +     
Sbjct: 732 VGITRARETLYLTRAML---------RASWGNAVANPASRFLEDIPEKLMYWRREEPGAG 782

Query: 735 GQC 737
           G  
Sbjct: 783 GWD 785


>gi|302330341|gb|ADL20535.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           1002]
          Length = 785

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 88/735 (11%), Positives = 196/735 (26%), Gaps = 89/735 (12%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +    R   + P     +     T +A  E+R     + G  ++ +  + +  
Sbjct: 31  TAVLTRRIAYLMRIRGVQP---GQILAITFTNKAAAEMRERVAHLVGPIASRM-WVSTFH 86

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                                         A+L+    +       D        +    
Sbjct: 87  STCVRILREQ--------------------AQLVAGLNSNFTIYDSDDSKRLLAMISKDM 126

Query: 143 -ANAIWLAKNLADI-IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
             +       L    I  ++ E        A        +    A         +  RL 
Sbjct: 127 NLDIKKFTPRLLGAGISNLKNELISPATAVAEAESTKNPYETTVAA----VYVEYQRRLR 182

Query: 201 ELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
           + NA          +R   EH       +     ++I     +  A   L+  +      
Sbjct: 183 QANAVDFDDLIGETVRIFKEHPQVTEYYRRRFRHVLIDEYQDTNHAQYVLIHELVGTGET 242

Query: 256 A-IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
           A  +    D       +   T ++            +P  +   L       +  +    
Sbjct: 243 ASELCVVGDSDQSIYAFRGATIRNIEEFE-----RDYPNATTVLLEQNYRSTQTILNAAN 297

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
           +V ++   R                      + K+         +    ADNE +EA  I
Sbjct: 298 SVISQNENRR---------------------KKKLWTALGSGDPITGYVADNEHDEARFI 336

Query: 375 AIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
           A  +    D+  +    A++    N +R V+    R GI   +  G           + +
Sbjct: 337 AQEIDALADKGIDYSDMAIMYRTNNSSRAVEDVFMRSGIPYKVVGGTRFYERKEIRDVIA 396

Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            L  +    D +++  ++  P    G          +  + V+L+          +  L+
Sbjct: 397 YLRLLDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQGVSLQQALIDASEGQVS-LL 455

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
             R     +         R S  +    +  +  I   I  ++     K     +    D
Sbjct: 456 GARGRNAISGFVNMMSGLRDSAAESVNEITGMPDIGNVIAQILDITGYKAELEKSNDPQD 515

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS-SLFSKIIETGSCIKANAIEWIDIITR 611
             +L    L  +             +     +  S    +   G     +   +++ ++ 
Sbjct: 516 GARL--DNLNELVSVAREFSSEAANQVAYAKMDGSELDDLAAVGEPEPGSLQAFLERVSL 573

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
           + D + +     +   + ++    ++ L F  + L G  +G +P   A            
Sbjct: 574 VADADQI--PDNEQGLVTLMTLHTAKGLEFPVVFLMGWEDGQFPHLRA------------ 619

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL----RENNIPTIASRWLQRLLVLGGTD 726
             L   ++   +    +      R  L  TR++      N +   ASR+L  +       
Sbjct: 620 --LGDPKELAEERRLAYVGITRARKALYITRAMLRSSWGNPVTNPASRFLTEIPQELLDW 677

Query: 727 FFDNLKKRGQCYLDW 741
             +  +     +   
Sbjct: 678 RREEPESSFDAWGQP 692


>gi|152979443|ref|YP_001345072.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus succinogenes
           130Z]
 gi|150841166|gb|ABR75137.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus succinogenes
           130Z]
          Length = 1113

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 110/967 (11%), Positives = 249/967 (25%), Gaps = 119/967 (12%)

Query: 27  NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86
            G L+   +    +P    S TI V +    Q L+ +  E  G  + +          + 
Sbjct: 17  AGILISLLQQRSTDP--FQSETILVQSPGMAQWLQLKIAEADGIAANL--RFPMPASFIW 72

Query: 87  EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
           ++  AD L   +   P         L  L+ I        +  L          +     
Sbjct: 73  QQ-YADNLPDVSEQSPFGKEAMTWHLMALLAIL------PLPRLNEYWRDHALGNQEKRY 125

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGM------------WWLLAADFLKIASKY 194
            LA+ +AD+ D        W D     +++Y                      ++   + 
Sbjct: 126 QLARQIADLFDQYLVYRPDWIDAWEKGDDRYIENQLRYALADNPVLLAQIKQDIRWQGQL 185

Query: 195 WTERLV---ELNASSPVGYQ----IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           W E +         SP  ++    +  +   A    K     I + G +    A    + 
Sbjct: 186 WRELVAAVCRHTKDSPARHRVNLHLTYLNTLATGRPKNLPPRIFVFGISALPKAYLETLQ 245

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH---------------- 291
            ++ H    +       H    + +    +  ++ +     S                  
Sbjct: 246 AISRHSQVHLFFNNPSKHYWGDLADPRFIRELSLKTYREHGSDREANWLSETEKVRLKNG 305

Query: 292 ----------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                      Q     L  +  + R+    L +++   +     +  + L     +   
Sbjct: 306 EFERSADDELLQIGHPLLATWGKLGRDFFYLLSDLNAREFTAYTPLEGADLLTQVKNRIL 365

Query: 342 TDILENKIP-NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
             + + + P    K    V L    +   E   +   L      +     K   ++ AD 
Sbjct: 366 NLVPDKQQPLQPPKADRSVVLHACHSPMREVEVLHDYLLRQFQADETLTPKDIVVMVADI 425

Query: 397 NLARRVKLEL-----------------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
           +        +                     I   IS G      +  +   SLL+    
Sbjct: 426 DRYTPYIQAVFGQYQRYTEDRIGKKRPDERYIPFSISDGKLSENDVLLATYLSLLDLKNS 485

Query: 440 LNDFMAIATLVKHPLAKFGF-----PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                 +   +  P  +  F         +      +E+           + +  +    
Sbjct: 486 QFSAEEVLAFLDVPAIREKFEIALSDLPQIRHWVARVEIRFGLDKNCDSAVKNYNAWQAG 545

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                                  + +  L    +      L            + SI  W
Sbjct: 546 LERLLLGYAMRESQGIWQDSLGFDDSDGLKGQVVGNLAAFLDRLAQWHTFLQQSHSIEKW 605

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +     L +  + + + +     +     + S+   +         +A    +++T  +
Sbjct: 606 QQNLTALLTDFFVADEQTVDI--QQYIRDAVRSVTELLRSMDFQEDISAEVMAEVMTEKL 663

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
           +             +     L  R + F  + L G+NE  +P+    N F   +M+    
Sbjct: 664 ND-NPNSLKFLVGKVSFCTLLPMRSIPFRVVCLLGMNENDYPRRRTPNSF--DLMRYHRR 720

Query: 674 LKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDN 730
                +         E     +  L  +   R   +N P   S  + +L      +  DN
Sbjct: 721 KGDRSRRDDDRYLFLEALLAAQEQLYISYVGRSITDNQPRQPSVVVSQLQDYINDNLADN 780

Query: 731 LKK----------------RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
             +                 G         L  +   P  +  +   PL  +       +
Sbjct: 781 ALRLTEKVHPMTIFSPQNFYGNDRTFAKEWLPSSPAMPSGENKQAVLPLTEKLTRIELDQ 840

Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
           + + +  P   +    L + F       PD  +  TL    +  +    +  +  E+   
Sbjct: 841 LVKFVRHPVKYFFENQLGVYFQNDDDLIPDTENF-TLDGLDLYRIKDDFLTYSDEELCRY 899

Query: 835 MKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
            +++ +     + N     +   R           ++  +               + ++ 
Sbjct: 900 FERLSVKGILPRGNFGKVYEAKVRSEMETFREKVRDYLLQ---------TPQTQAIELDI 950

Query: 894 IGIHLTG 900
            G+ +TG
Sbjct: 951 DGVKITG 957


>gi|315604158|ref|ZP_07879224.1| RecB family exonuclease [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313864|gb|EFU61915.1| RecB family exonuclease [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 294

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 65/249 (26%), Gaps = 22/249 (8%)

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
            P P         S S  K+    P       +                  GTL H ++ 
Sbjct: 16  APSPAERTWDPALSASRAKEYERCPLQYRLHVVDGYREPESR-----AKALGTLVHAVLE 70

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI-------DIIWRHLFHKISHSFLEH 870
           +L        T +              ++N               W      +   +   
Sbjct: 71  DLFSLPPRSRTRDAARAQLAPAFEALTQKNPEVAALFGDEADREAWLEDARSVVDGYFAI 130

Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
           E+     I             +  G+ L GF DR+D    G + + DYKTG  P      
Sbjct: 131 EQPQW--IAPAAREARVTATTKG-GVRLLGFIDRVDRAPDGRLRVVDYKTGKAPSPRYVD 187

Query: 931 KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
           + +  Q+   A  L             + +  + L+    I    +       +   ++ 
Sbjct: 188 EAL-FQMRFYALLLAR------TQVLPSRMQLVYLRAGQVITFDPDPTDVADFERRIDQL 240

Query: 991 LKNLIEIVT 999
              + E + 
Sbjct: 241 WGRIEEDLA 249


>gi|158422338|ref|YP_001523630.1| putative exonuclease V [Azorhizobium caulinodans ORS 571]
 gi|158329227|dbj|BAF86712.1| putative exonuclease V [Azorhizobium caulinodans ORS 571]
          Length = 1171

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 88/787 (11%), Positives = 196/787 (24%), Gaps = 75/787 (9%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
              A+ L      +    ++      +           E                G+    
Sbjct: 387  RTAEMLGRVPASFVHYKLDRGIDHVLV--DEAQDTSPEQWRVVRGLVSDFFSGEGAREGV 444

Query: 243  ARLMSTVANHPNGAIVLPGLDC----HIPTAIWNTITEKSTNITSSNTTYSTHP------ 292
             R +  V +         G D      +  A      ++     S   ++ + P      
Sbjct: 445  KRTLFVVGDEKQSIFSFQGADPRAFGDMRLAFQREAGQEDFRQVSLPHSFRSAPGVLEAV 504

Query: 293  QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
                 +      +  ++V              + +  + +P     + +     ++I   
Sbjct: 505  DAIFQRAEASAGLTIDNVAPPHAAIRADAPSLVELWPTVVPAAKVKVDDWRRPLDEIAGD 564

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS-ALITADRNLARRVKLELTRFGI 411
                     I +      A  +AI  R       +    L+     L   V   L   G 
Sbjct: 565  DPVSRLAERIASFVRTGIAQRLAIPSRGGRPMRAQDVLVLVRRRGRLFEAVIRALKEAGG 624

Query: 412  NIDISAGIPL--STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
             +D++    L  +  + +  L +L +A+   +D +A+A+++K PL      +      + 
Sbjct: 625  GVDVAGADRLVVAEHIAALDLMALGDALLSPDDDLALASVLKSPLFGLTDDDLLRLCPRR 684

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                   R            +  L R   +        + +R+   D     +L     +
Sbjct: 685  E-----GRLLDVVTTGDGSIAERLTRWRGEARELRPFDFYARVLGRDGGRRAMLARLGPE 739

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                L  +     +                                +    G        
Sbjct: 740  AADVLDEFMALARTYESLEPA------------------TLPGFLAFLRRGGAETKRDME 781

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
               +    +  +  + ++    ++      PK   S  L               L +   
Sbjct: 782  SGRDEVRVMTVHGAKGLEAPIVILADTVDLPKARTSGGL---------------LHVPTA 826

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY-----TRSLR 704
            +    P    + P     + +     TA +        +         +      TR+  
Sbjct: 827  DGATVPVLAPRKPEDPPSLAAARAAVTARELEEYRRLLYVALTRAEDALIVCGAETRAAA 886

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
            ++      +     L+     +  + +   G    +  R           +     P   
Sbjct: 887  KDKTHARPAGCWYELVHAALIEEAEPVPATGWE-GEVLRWRKSGRTLAPAEGTLSAPVAP 945

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
              PR     ++  ++    A+   R     F P      D   RG L H ++  L     
Sbjct: 946  PPPRPARLEDLPPVLISTEAIRPSRSAAASFRPPADGSLDPRVRGDLVHRLLAGLGALPE 1005

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            ++       L+  + +                R          L H              
Sbjct: 1006 DQREAAGERLLDHVAEQVAAHH----------RAEVMAEVMGVLTHAPLAGLFAPHSLAE 1055

Query: 885  IPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSL 939
            +P    +   +   + + G  DR+ +     + + D+KT   P    +   +    QL+L
Sbjct: 1056 VPVVGRLTAADGRLVTVNGRLDRLAVTGD-QLILADFKTDRVPPQSLDRIGEGYVGQLAL 1114

Query: 940  EAAALKA 946
             AA L  
Sbjct: 1115 YAAVLAR 1121


>gi|258653148|ref|YP_003202304.1| RecB family exonuclease-like protein [Nakamurella multipartita DSM
            44233]
 gi|258556373|gb|ACV79315.1| RecB family exonuclease-like protein [Nakamurella multipartita DSM
            44233]
          Length = 323

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 84/283 (29%), Gaps = 27/283 (9%)

Query: 745  LDYTTKQPHYKRPKP--FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
            +         +  +         +P   S S      + P     R + +L   P     
Sbjct: 7    MAQPVGTDPAEASEAFGEAARPRRPLALSPSRASDFKSCPLLYRLRAVDRLPEPPSP--- 63

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE------NLPPHIDIIW 856
                 RGTL H ++ E+  +   + TP               ++       LP      W
Sbjct: 64   --AAVRGTLVHTVLEEMFGRPGPERTPRRTAEAVGPAWERMAEQCPELVGMLPDEAMAGW 121

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
                  +  S+   E+  +   E        ++     G+ L GF DR+DL  +G + I 
Sbjct: 122  LDSARDLVRSYFRLEDPRR--FEPQACEYAVEID-TVDGVPLRGFIDRLDLAPTGELRIV 178

Query: 917  DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
            DYKTG +P  +   + +  QL   A  +       +     A L  I L     +    +
Sbjct: 179  DYKTGRSPGPDFEGRALY-QLKFYALMIYR-----LRGVVPAQLKLIYLADGLSLQYAPS 232

Query: 977  DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
            + +            + +   +         F +      +  
Sbjct: 233  ESELIGFSHAVGALWRAVTAAL-----ESGNFPARRGPMCRWC 270


>gi|323342308|ref|ZP_08082540.1| hypothetical protein HMPREF0357_10721 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463420|gb|EFY08614.1| hypothetical protein HMPREF0357_10721 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 810

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 83/764 (10%), Positives = 189/764 (24%), Gaps = 105/764 (13%)

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
           +I  +   + L+                  A       +  + IA            +  
Sbjct: 9   RIFHEDLKQILLSKQDYYLGVAVRDF--KLAFFESDTHRRSVEIAVFNQLQKCNCPRLQE 66

Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
           V  +P    VL  L   +     +       +     T         LA +  +L+    
Sbjct: 67  VLKYPKTMHVLIDLLQELYLYGLSL------DSCPRETPLQEEIFQCLALIDPYLE---- 116

Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                      +       + ++                 I    +    +    A N R
Sbjct: 117 --------KPVVQEDVEYEAVAYGLSHAEYAFLKRHNIPFIEPQSQKPDSIFFKVALNPR 168

Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL-STTLHS 427
            E  ++   +   +    K + +  A++++   +   +           G PL       
Sbjct: 169 SELEAVVQDI---IRNGYKSATIAVANKSMIEPLIESIFERY-------GYPLKLQDRRF 218

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            ++ S   A+        I  L+K           +  + +  +            D+  
Sbjct: 219 ELMKSQYRALLDFAFDPNILQLIK-----AIESGAFGLKRREDIVTYLTHFEFELNDVFG 273

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                   +  +  +           +ED       +D ++                   
Sbjct: 274 -----AYDLCEETESYPDLFALQNRIQEDVVRLKEYLDEVMN------------------ 310

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
           L   +        +++    +   L +L  +  G+     +  ++E    ++A+      
Sbjct: 311 LDFKETLIACYNVIKSHTHGDLTSLCSLLEKHLGEYQEETYLLMLEHLDSLQAH------ 364

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                          +  S L I+      L+  D L +  L+   +P   ++   +   
Sbjct: 365 --------------QQNISPLRIVDYCSLPLIPQDHLYVVNLSAKNFPSIRSRTGIIDEA 410

Query: 668 MQSDLNLKTA--EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
               +       E+          + +  +++  + S            +          
Sbjct: 411 YLRCIEGYPRLDERTQFTLRMQNHIFDHNKNMTLSYSSATYEGKGQEVSYPVEQFARENN 470

Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
               +       Y           K            LE      S S  +  +NDPY  
Sbjct: 471 IDLKSWILTQNTY-------RKPVKHHLSPTLAKELYLEDGKLIGSISAFQMFVNDPYQF 523

Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
           +  R LK+          D    GT+ H ++      +      +        +   F  
Sbjct: 524 FMERGLKIREPEIL--KFDPRIIGTVNHAVMEYYHDNKNIDPWTD--------VRKVFPM 573

Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAKMAIESIGIHLTGFAD 903
            +       +       +    ++  +   +    + +      +      GI L G  D
Sbjct: 574 THPR---YRMIYDRNQDLMEQNVDFVDASMADTTFQVVSKERWFREETMFNGIVLRGIID 630

Query: 904 RIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKA 946
           RID     +V + DYK+       E  +     QL   A   + 
Sbjct: 631 RIDEN-DHYVQVIDYKSSQLAMTAENVKAGTQLQLLTYAMIAEK 673


>gi|148549740|ref|YP_001269842.1| exodeoxyribonuclease V subunit gamma [Pseudomonas putida F1]
 gi|148513798|gb|ABQ80658.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Pseudomonas
           putida F1]
          Length = 1160

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 111/986 (11%), Positives = 255/986 (25%), Gaps = 108/986 (10%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79
           L   +V   R  PL P  L +    V +    Q L+          +  G        ++
Sbjct: 22  LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPLEDDQGGCGIAAAIDVQ 79

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             G  + + + + L  S    P VS + +     RL+ +    +     +      L+  
Sbjct: 80  LPGSFMWQLYRSVLGRSE--IPEVSLLDKAPLTWRLMRLLPALIERPHFEPLRRF-LTDD 136

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-----GMWWLLAADFLKIASKY 194
                   LA+ LAD+ D  +     W  L    + ++          +     +  ++ 
Sbjct: 137 SDLRKRYQLAERLADLFDQYQVYRADW--LKDWASGEHVINTARGERKVLPPGNRWQAEL 194

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMST 248
           W   L ++        +  + +   E +    + P      +I+ G +         ++ 
Sbjct: 195 WRALLEDVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPPRVIVFGISSLPAQALEALAG 254

Query: 249 VANHPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
           ++      + +     H    I             ++            T  Q++   L 
Sbjct: 255 LSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQTLHQHAHPLLA 314

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSF---------------LPPDTSDMRNTDIL 345
            +    R+ +  L +  +    + +                                +  
Sbjct: 315 AWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSDGSPTTLLNELQDDILELRPLAESR 374

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARR 401
           E   P        +    A + + E   +   L            +   ++  D +    
Sbjct: 375 ERWPPVDTTKDRSIRFHVAHSPQREVEILHDQLLARFSADPTLRPRDVIVMLPDIDTYAP 434

Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP- 453
               +           I   ++             L  LL           +  L+  P 
Sbjct: 435 HIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSRFAVSEVLDLLDVPA 494

Query: 454 -LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHV 505
             A+FG  E  L      +E   +R   ++     L       ++     +        V
Sbjct: 495 VRARFGIRENDLPTLHRWIEGAGIRWGLDAAQRASLGLPAGLEQNSWRFGLRRMLLGYAV 554

Query: 506 PHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
              ++    E  +    L    I   +  L   +    +     ++S W +     L   
Sbjct: 555 GVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVACQALSEPATVSQWGERLHALLHVF 614

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
            L E      L  +       S        G           +     +D   +  +   
Sbjct: 615 FLAEDEGDEFLLMQ-LQDLRDSWLEVCETVGLHDPLPLTVVREAWLSGLDQGKLSQRFLA 673

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
             ++     +  R + F  + L G+N+G +P+      F           ++  +     
Sbjct: 674 G-SVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQPPLDFDLMASDYRPGDRSRREDDRYL 732

Query: 685 AHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                + +    L  +   R   +N    AS  + +L       +     ++GQ      
Sbjct: 733 -LLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHIAAGWHLADAQQGQPAKPGE 791

Query: 743 RKLDYTTKQPHY-------------------------------KRPKPFPPLEAQPRTYS 771
           + L   T++                                  ++ +P  P        S
Sbjct: 792 QLLHALTQEHPLQPFSPRYFQKGSPLFSYAHEWQVLHQQGEADEQSEPGLPPYQDAEALS 851

Query: 772 FSEIKQLINDPYAVYARRILKL--DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             ++   +  P   +  + LK+  + +     D +     TL     +E +         
Sbjct: 852 LHQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDTLQRYGASESLLGAALAEPD 911

Query: 830 EINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                ++           LP      + ++   +     L+  +++        V     
Sbjct: 912 NAEQALRAQARRLQACGLLPLAGFGELLQNELIEPLPDLLQRHQQLLQRW-PQLVEGALP 970

Query: 889 MAIESIGIHLTGFADRIDLLKSGFVD 914
           +  E     L G+  R+   +   + 
Sbjct: 971 VHFEHGQHRLEGWLGRVFQAEDQSLL 996


>gi|293394675|ref|ZP_06638967.1| exodeoxyribonuclease V gamma subunit [Serratia odorifera DSM 4582]
 gi|291422801|gb|EFE96038.1| exodeoxyribonuclease V gamma subunit [Serratia odorifera DSM 4582]
          Length = 1123

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 111/978 (11%), Positives = 251/978 (25%), Gaps = 126/978 (12%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL++   +              +  I V +    Q L+ +  E  G  + I 
Sbjct: 11  DLLKTLTSALIDREPLA---------DPFQAEVILVQSPGMAQWLQMQLAEQFGIAANIA 61

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
                L      +    +L         S      +L  L+     +     + +  +  
Sbjct: 62  ---FPLPASFIWEMFTRVLPGIPQESAFSKDAMTWKLMWLLPDMLTE----PEFVSLQHY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
           LS          LA  +AD+ D       +W  L + +  +       A  +        
Sbjct: 115 LSDDDDKRKIHQLAGRVADLFDQYLVYRPQW--LESWQRGERIDALSEAQQWQAPLWARL 172

Query: 196 TERLVELNAS--SPVGYQIALMRAEAEHLMKGTKGP--IIIAGSTGSIPATARLMSTVAN 251
            E   +L              +    +        P  + I G +   P     +  +  
Sbjct: 173 VEYTRQLGQPEWHRANLYRRFISTLEQAQTCPPGLPPRVFICGISALPPIYLEALQALGK 232

Query: 252 HPNGAIVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHP 292
           H +  ++      +    I                               ++    +   
Sbjct: 233 HIDIHLMFTNPCRYYWGDIQDYAFLARLQSRKRRHHQQAREQGLFRQPEQAAQLFDADGE 292

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI--- 349
           Q     LL        D   L      +      +  +      +   +   LE+     
Sbjct: 293 QRLSNPLLASWGKLGRDHLYLLAQMASLQEVDAFVDIAPDNLLHAIQHDMLELEDHAIIG 352

Query: 350 ------------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALIT 393
                         +      ++L    + + E   +   L   L E+     +   ++ 
Sbjct: 353 TTAQTLERSDNKRTLDPADRSISLHACHSPQREVEVLHDRLLAMLAEDPQMTPRDIIVMV 412

Query: 394 ADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
           AD +        +         +   IS               SLL+          +  
Sbjct: 413 ADIDSYTPYIQAVFGNAPPERYLPFAISDRKARQAHPALQAFISLLDLPQSRFSAEQVLA 472

Query: 449 LVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV-----------LDR 495
           L++ P    +F   E+ L   +  +    +R   +  ++  L                  
Sbjct: 473 LLEVPALAARFAIDEEGLRLLRRWVSESGVRWGLDDDNVRQLALPATGQHTWQFGITRML 532

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
           +    ++           +E   LA  L   + + +  L  ++          ++++W  
Sbjct: 533 LGYAMDSNIGDWQGVLPYDESSGLAAELAGQLAELLAQLADWR---QRLGEARTLAEWLP 589

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
           L    L +    +      L   E  +    +                   D +   +D 
Sbjct: 590 LCRRLLDSFFAADADTEVILALIE--QQWQQVIEFGQGARYPDAVPLTLLRDELAARLDQ 647

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
           E +  +      +     +  R + F  + L G+N+GV+P+      F     Q     +
Sbjct: 648 ERISQRFLAG-QINFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGFDLMAQQVKRGDR 706

Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR---------WLQRLLVLGGTD 726
           +             + +  + L  +   R     +             +LQ+   L G +
Sbjct: 707 SRRDDDRYL-FLEAILSAQQQLYISFIGRSIQDNSERYPSVLVTELLEYLQQSYCLPGDE 765

Query: 727 FFDN---LKKRGQCYLDW---------------------TRKLDYTTKQPHYKRPKPFPP 762
             D     ++ G+  L W                        L    ++         P 
Sbjct: 766 HLDADGSAQRVGEHLLRWHARMPFAVENFLPEAEAQSYAAEWLPAADRRGEAHPVFNQPL 825

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
                   S  ++ +    P   + +  L ++FI    +  D     TL +    +   +
Sbjct: 826 PLEPQTQLSLDDLLRFYRHPIRAFFQLRLGVNFILEETELADEEPF-TLDNLSRYQFNNQ 884

Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
            +N    + +                 P  +I W+    ++S    +  E+ + S     
Sbjct: 885 LLNTLIEDQDATRLYQRIRASGGLPYGPFGEIYWQKQQEEMSELAAQVREERRES----- 939

Query: 883 VNIPAKMAIESIGIHLTG 900
                ++ ++  G+ L G
Sbjct: 940 --SSLELDLDIAGVRLGG 955


>gi|282600070|ref|ZP_05972885.2| DNA helicase II [Providencia rustigianii DSM 4541]
 gi|282566938|gb|EFB72473.1| DNA helicase II [Providencia rustigianii DSM 4541]
          Length = 764

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 71/686 (10%), Positives = 157/686 (22%), Gaps = 119/686 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
              T +A  E+R     + G          I +   +         L + NL      + 
Sbjct: 104 VTFTNKAAAEMRHRINHLIGTSEGGMW---IGTFHGLAHRLLRQHYLDA-NLPQDFQILD 159

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
              +  RLI      +    K   P   +       +                 E  + +
Sbjct: 160 SDDQ-YRLIRRLLKAMNLDEKQWPPRQGMWYINGKKD-----------------EGLRPQ 201

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HL 222
            + +  N      W           + + E              +               
Sbjct: 202 HIESYGNPVEAT-WQK-------VYQAYQEACDRAGLVDFAELLLRAHELWLNKPHVLQH 253

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +     I++     +       +  +A      +++   D       W     ++    
Sbjct: 254 YRERFTNILVDEFQDTNSIQYAWIRILAGDTGKVMIV--GDDDQSIYGWRGAQVENIQRF 311

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            ++                            G  +  +       +      +T    N+
Sbjct: 312 LNDFP--------------------------GAETIRLEQNYRSTNNILKAANTLIANNS 345

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLAR 400
           D L   +         ++L  A NE +EA  +   ++   +     +  A++      +R
Sbjct: 346 DRLGKNLWTEDGDGEPISLYCAFNELDEARYVVGRIKQWHENGGALQDCAILYRSNAQSR 405

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            ++  L +  +   I  G             S L  I   ND  +   +V  P    G  
Sbjct: 406 VLEEALIQSAMAYRIYGGQRFFERQEIKDALSYLRLIANRNDDASFERVVNTPTRGIGER 465

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                R                               T ++              ++ L 
Sbjct: 466 TLDTVR------------------------------QTARDQQLTLWEACEYLLREQVLG 495

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
                 I + +  +            ++      K +            +    +   EE
Sbjct: 496 GRAASSIERFLELIDALAKETQDMPLHVQADRVIKDSGLRAMYEQEKGEKAQARIENLEE 555

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
               +  FS   E    +   A      +        V         + ++    ++ L 
Sbjct: 556 LVNATRDFSYQDEDQDLMPLQAFLSHAALESGESQADV-----SQDAVQLMTLHSAKGLE 610

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
           F  + + G+ E           F S++   +      E+ +        M      L  T
Sbjct: 611 FPVVFMVGVEE---------GMFPSQMSMDESGRLEEERRLAYVGITRAM----EKLTIT 657

Query: 701 RSLREN----NIPTIASRWLQRLLVL 722
            +         +    SR++  L   
Sbjct: 658 YAESRRLYGKEVYHRPSRFIGELPTE 683


>gi|260912919|ref|ZP_05919404.1| exodeoxyribonuclease V gamma subunit [Pasteurella dagmatis ATCC
           43325]
 gi|260632909|gb|EEX51075.1| exodeoxyribonuclease V gamma subunit [Pasteurella dagmatis ATCC
           43325]
          Length = 1129

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 98/964 (10%), Positives = 232/964 (24%), Gaps = 139/964 (14%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            + V +    Q L+ +  +  G  S I   +P        + ++   D L         +
Sbjct: 37  VVLVQSPGMAQWLKWQIAQKKGIASNIKFPMP-----ASFIWQQ-YLDNLPQVEEQSQFN 90

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+  + +        L      S          L   +AD+ D       
Sbjct: 91  KTSMTWRFMRLVPNYLS--GQSFSTLRHYLAYSAQSEQYKLYQLVHKIADLFDQYLVYRP 148

Query: 165 KW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE-------LNA 204
           +W             + L                  ++  +  W   + +        N 
Sbjct: 149 EWLKAWESGQDDMVVQKLTQKLPANDDPILQQIVQDVRWQASLWRALVQDIQAETQNENV 208

Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                     +    +   K     + I G +            ++ H +  +       
Sbjct: 209 VHRAYLHTQFLSFLQQDSPKNIPKRLFIFGISALPIGYLETFKALSYHCDVHLFFTNGCR 268

Query: 265 HIPTAIWNTITE--------------------------KSTNITSSNTTYSTHPQYSLAK 298
                + +                                    +       HP      
Sbjct: 269 EYWGDLVDHKFRHKLAQMQRISYYNQQSHAIYQEDPTKALEQTATDEEILEGHP------ 322

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD----TSDMRNTDILENKIPNIQK 354
           LL        D   L     +    + V + + L           R   +  N   N  +
Sbjct: 323 LLSSWGKLGRDFLYLLTDLEQSENVNSVEAYTDLSERNLLSQVQARILRLDGNTGLNFTE 382

Query: 355 CFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLEL---- 406
               +      +   E   +   L        +   K   ++ A+ +        +    
Sbjct: 383 NDRSLTFHSCHSPMREVEVLQDYLLHLFQNNPEITPKDVVVMVANIDRYTPYIQAVFGQK 442

Query: 407 ---TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
               +  I   IS        +  +    LL           +  L+  P  +  F +  
Sbjct: 443 KRNDKSSIPFSISDNKLSENDVLIASFIHLLKMREAQFTAEEVLALLDIPAIRNKF-QID 501

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
           L+  +     V   G +   +                    +  +  R      + ++  
Sbjct: 502 LTDLEQVHHWVVNAGIRFGLEKTTDSQQTNYNSWQAGLERMLLGYAMREENGIWQDSLGF 561

Query: 524 -------VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                       +    +                 +W +     L N    +      L 
Sbjct: 562 DNSYGLGGQLAGKLAEFITCLSDWYEQMQQPQLALNWQENLTALLANFFDSDEDNSATLL 621

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
           + ++   +    ++I +T      N     D++   ++ +    +      +     L  
Sbjct: 622 YIQD--VIEQSIAQIQQTHFAENINIDVIADMLASALEDDPNTMRFLAG-KVNFCTLLPM 678

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           R + F  + L G+N+G +P+    N F               +         E     + 
Sbjct: 679 RSIPFKVVCLLGMNDGEYPRQQTPNSFDLMKHDRRKG--DRFRRDDDCYLFLEALLSAQE 736

Query: 697 L-IYTRSLRE--NNIPTIASRWLQRL--------------------------LVLGGTDF 727
               +   R   +N     S  + +L                                +F
Sbjct: 737 YFYVSFVGRSIIDNQAKEPSVLVSQLLDYVAEKLAQNDDKNWREHLVQQHPMTAFSPENF 796

Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
             N +   + +L    + +    +   +  +     + +    S  E+   + +P A + 
Sbjct: 797 TKNDRSFAKQWLPLANRENANQFENFIQPIEQMLLDDDREIRLS--ELIDFVQNPVAFFF 854

Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELI--KKRINKNTPEINHLMKQI----IDS 841
           +R L +  +    +    T+  +L  + + +       +  +  E +    Q+       
Sbjct: 855 KRRLGVY-LTGLDESIADTENFSL--DALEQYQINDALLYCDEDETDTFFAQLKIKGALP 911

Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
             E  N+  +          +    +L+ + +IQS        +   +      + L G 
Sbjct: 912 RGEFANIYANKQKEAVQELKEKIADYLQQDYQIQS--------VDLTLKTSKGKVRLVGN 963

Query: 902 ADRI 905
            DR+
Sbjct: 964 IDRL 967


>gi|85705745|ref|ZP_01036842.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp.
            217]
 gi|85669735|gb|EAQ24599.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp.
            217]
          Length = 1123

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 76/830 (9%), Positives = 178/830 (21%), Gaps = 98/830 (11%)

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY--WTERLVELNASSPVGYQIAL-- 214
            +  E+ +   L  L  +K       A  FL    +       L   +        +    
Sbjct: 313  LRVEDTRPARLALLAMQKTRALHDFARAFLPAYERAKQLRGLLDFDDLILRARDLLTAPA 372

Query: 215  MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCH 265
            + A   + + G    I++  +  + P   +++  +A                +    D  
Sbjct: 373  VAAWVLYRLDGGIDHILVDEAQDTSPVQWQVIERLAQEFTSGEGARADVARTIFIVGDKK 432

Query: 266  IPTAIWNTITEKSTNITSSNTTYS-----THPQYSLAK--LLDFLDIKREDVKRLGNVSN 318
                 +     +  +              +  Q  +          I           S 
Sbjct: 433  QSIYSFQGADPREFDRMQREFGLRLSATNSPLQSRVLAYSFRSSRAILTTVDCCFDQSSE 492

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE-AISIAIA 377
              +         F            + + +          V +   ++     A  +A A
Sbjct: 493  SGFTPEQGHKAFFDTLPGRVDLWPVVEKPEEEEPPAWHMPVDIRATNDPAILLARQVAAA 552

Query: 378  LRMSLD-----------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            +R  +                  +      L+     L   +  E    G+ I  +  + 
Sbjct: 553  MRDMIAARQAIPDSKSPSGFRAVQPGDFLILVRRRSALFHEIIRECKAQGLPIAGADRLK 612

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            +   L    L +LL+ +    D +A+A  ++ PL  +   + Y                +
Sbjct: 613  VGAELAVRDLEALLSFLATPEDSLALAIALRSPLFGWSEAQLYDLAQGR-NRPYLWEELR 671

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                       VL  +    +         R+         LL     +    +      
Sbjct: 672  AHEAERPEVMAVLHDLRNHADFLRPYDLIERVLTRHDGRRRLLARLGTEAEDGIDALLAQ 731

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
              +                        +      +W E +   +             +  
Sbjct: 732  AMAYESR------------------AVDSLTGFLVWMETDDLEIKRQLDSAGNRIRVMTV 773

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            +  + ++    ++              +   G         D                  
Sbjct: 774  HGAKGLEAPVVILPECGTWRMPNAPQIVTQSGHALWTGRADD------------------ 815

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW-LQRL 719
               +   +   +  +       +    +         +   +  +           +QR 
Sbjct: 816  ---MPPTLAKAIEAERRALLAERDRLLYVAMTRAETWLIVAAHGDLGKQGDTWYDKVQRG 872

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +   G      ++  G            T   P             Q      + +K L 
Sbjct: 873  MQAAGAVPHSFVQGPGFRLDHGIWAETETVSAPPALSRTVTLDPLFQRPAPLPARLKTLS 932

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                        K         +     RG   H ++  L              L+    
Sbjct: 933  PSDLG-----GAKALPGERGLDEEAAKRRGRQIHRLLEFLPTVPAADWPGTAARLL---- 983

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-GIHL 898
                   N           L    +   L                +     + ++ G  +
Sbjct: 984  ------SNGSDAATGDELALLLAEADKVLTRPSLSSLFTPDALTEVAVTAHLAALHGRRI 1037

Query: 899  TGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
             G  DR+ + ++  +   D+KT              +  Q+   A AL  
Sbjct: 1038 HGIIDRLIIDET-RILAVDFKTNALVPDTARDCPDALLRQMGAYAHALSQ 1086


>gi|326387191|ref|ZP_08208801.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208372|gb|EGD59179.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 764

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 90/765 (11%), Positives = 191/765 (24%), Gaps = 116/765 (15%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A L   L    R     P   + +     T +A +E+R     + G     +P + +  
Sbjct: 45  TAALTARLAWLLRQRLAWP---SEILCVTFTNKAAREMRERVGHLIGPAVEGMPWLGTFH 101

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            +  +                  ++R  EL  L   +     D    L  +  L      
Sbjct: 102 AIAAKM-----------------LRRHAELVGLTSNFTILDTDDQLRLLKQ--LIQAEGV 142

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
            +  W A+ LA +ID  +       DL AL+NE Y         F  +            
Sbjct: 143 DDKRWPARQLAGLIDRWKNRGLNPADLDALENEAYANG--RGQRFYALYQDRLRSI-NAC 199

Query: 203 NASSPVGYQIALMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
           +    + + + + R E + L   +     +++     +       +  +A       V+ 
Sbjct: 200 DFGDLLLHMLNIFRRERDVLEQYQQRFRYVMVDEYQDTNAVQYLWLRLLAQGRRNICVV- 258

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D       W      +      +      P   + +L          +     +  E 
Sbjct: 259 -GDDDQSIYSWRGAEVANILRFEKDF-----PGAKVIRLEQNYRSTPHILGAASGLIEEN 312

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
             R                     L   +         V ++   +  EEA  +   +  
Sbjct: 313 SER---------------------LGKTLWTELDGGDKVRIVGVWDAPEEARRVGEEIER 351

Query: 381 SLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              E       A++   +   R  +    + G+   I  G             + L  I 
Sbjct: 352 LEREGCPLDAIAILVRAQFQTREFEDRFLQIGLAYRIVGGFRFYERAEIRDALAYLRLIA 411

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
             +D +A   +   P    G      L R   A  +  LR      D  +L +     + 
Sbjct: 412 SPSDDLAFERIWNTPKRGLGDKTLEKLHRYARAQSIPLLRAAIEIADTDELPARARGTLV 471

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
               +      +S      +    +L +                        ++   +  
Sbjct: 472 ALARDFARWRDESARLTPAELARTVLDESGYTAALQAERSTDANGRLENLSELARAMEEY 531

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
            T    +         +   +E                                      
Sbjct: 532 ETLSDFLEHVSLVMDNDNSADEA------------------------------------- 554

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                     + ++    ++ L FD + L G  EGV+P   + +         +  L + 
Sbjct: 555 ---------KVTVMTMHGAKGLEFDQVFLPGWEEGVFPSQRSLD---------EGGLASL 596

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRG 735
           E+    A      A     +++  + R       +I SR++  L  +   +   ++    
Sbjct: 597 EEERRLAYVAITRARKRCTILHAANRRIYGQWTSSIPSRFIAELPEVHVVE-ESSMSGGA 655

Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
             +     +           +P          +  +   +     
Sbjct: 656 SLWRAQWSEQSDPFAHVARNQPGKVASRGPGWQRAAAQPLNTAPR 700


>gi|110598178|ref|ZP_01386455.1| exodeoxyribonuclease V, gamma subunit [Chlorobium ferrooxidans DSM
           13031]
 gi|110340192|gb|EAT58690.1| exodeoxyribonuclease V, gamma subunit [Chlorobium ferrooxidans DSM
           13031]
          Length = 1071

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 96/922 (10%), Positives = 238/922 (25%), Gaps = 90/922 (9%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L S  I + ++   + L  E     G  +          + +       + L    +  
Sbjct: 29  ALQSEMIVLQSRGMQRWLSMELASRFGVWANGH---YPFPNAMVTGLFECMQLDQPDSSS 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S      ++ RL+                ++ L+   +      LA  +AD  D     
Sbjct: 86  FSKEVMTWKIIRLLGEMTELEVFRPL----QTYLADDRNGLKCFQLAGKIADTFDQYTLF 141

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                       +     W             W + + E +       +    R      
Sbjct: 142 RSDLLSGWEAMEDSGAGEWQAVL---------WRKLVDEASGKHRGSLKDEFCRKIRSRQ 192

Query: 223 --MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
             +      I + G +        ++S V+   +  + +          I +        
Sbjct: 193 GHVARFPERIALFGISSLPGFYLEMLSAVSEIVDVNLFILSPTKEYWGDIVSRRRVAGMP 252

Query: 281 ITSSNTTYSTHPQYSLA----KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
                     +P  +      +    + ++  D   +        G   ++         
Sbjct: 253 AAEKALHTEGNPLLASLGTIGRDFSGMVLELNDDAVVEEELYVDPGEDSLLHLVQSDMLN 312

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-----NKKKSAL 391
                +D +  K+         V +    +   E   +   L   LDE      +    +
Sbjct: 313 LADTGSDGVRRKV---DAADRSVHIHSCHSPLREIEVLHDNLLFMLDELPGLKPRDILVM 369

Query: 392 ITADRNLARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
           +T     +  +     R G         I+    L+    +S +  LL+          +
Sbjct: 370 LTDVEAYSSYISTVFGRSGEGVPALPYTIADRTFLNEGEIASSMLKLLDIEGSRMTAPQL 429

Query: 447 ATLVKHPLAKFGFP-EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
             L+  P     F  E+                   +    + + L   R  + +     
Sbjct: 430 FDLLSTPPVSRRFNLEESGLETIREWIEETNIRWGINESDREARDLPAYRENSWRAGLDR 489

Query: 506 PHWQSRLSEEDKELAVLL---------VDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                 + E  +  A +L         V+ +      + + +          ++ +W + 
Sbjct: 490 LLLGCAMPESGELFAGILPCEDMEGGAVELLGILAGFIDSIERLAIRIRSARTLEEWQEF 549

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +  L      +      L        ++++     ++    +      +  +   ++ E
Sbjct: 550 FLAMLNEFIKADEESEREL--AAIHGVVNTISDFGPKSRFTGEVQPAVMLSWLRMNLEQE 607

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
                    + +     L  R + F  + + G+N+G +P+      F     +     ++
Sbjct: 608 EHGLGFMTGA-ITFCSMLPMRSIPFRVIAMLGMNDGAFPRQDRSPGFDFIAREPRRGDRS 666

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            ++   +      + +    L  +   +   +N     S  +  LL      F  +  +R
Sbjct: 667 -KRSEDRYLFLETLLSARDRLYLSYVGQSVRDNSEIPPSVLISELLDAIERGFLFSGNER 725

Query: 735 GQCYLDWTRKLDY----------------------------TTKQPHYKRPKPFPPLEAQ 766
            +  L    +L                                        +P   L  +
Sbjct: 726 AEKRLVVRHRLQAFNAAYFTKGSPLFSYSRENFQALAGFASAGSSSVPFIDEPIEALSEE 785

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKR 823
            +T S   + +  ++P A +    L +     I   ++    +  G   + +  EL+ + 
Sbjct: 786 HKTVSLDRLIRFYDNPAAFFLSERLGIRFGGSIKPLEEREPFSVGGLDGYYMKQELLDEE 845

Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
           +    PE    +  I  +       P     +          +F     +       +  
Sbjct: 846 LQGGNPE---RLLPIFRA--RGLLPPARHGEMVFRKMVDEVKAFGGVVRQKTGGGAPLA- 899

Query: 884 NIPAKMAIESIGIHLTGFADRI 905
             P    ++     LTG  +R+
Sbjct: 900 --PLNAELQLGTFRLTGSLERL 919


>gi|85859569|ref|YP_461771.1| nuclease [Syntrophus aciditrophicus SB]
 gi|85722660|gb|ABC77603.1| nuclease [Syntrophus aciditrophicus SB]
          Length = 817

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 68/600 (11%), Positives = 161/600 (26%), Gaps = 54/600 (9%)

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDL--KSLVLDRIATQKNNTHVPHWQSRLSEE 515
                +        + +   R +       +L  ++ +   +A + +     +   R    
Sbjct: 226  PPDYETALSLVRRIGIAERRHDGELPGFTELAERAALPTLLAREIDTFLRNYGSDREQLF 285

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
               L   L  ++ + +   +  + N          +   +L         L   R+    
Sbjct: 286  IVPLDEKLSFYLWEFLFRPLGGQVNFAPWLPFTHFAAAQRLREGIRDGKGLAAMRRDLVS 345

Query: 576  WFEEEGKTLSSL-----------FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                    L                ++    + +     EW+ +    I  + ++ +  +
Sbjct: 346  ELTTRWNELDEADHSAFEGGITLCDELDRLRALMPFTENEWLPLAEHFIAVKKLRLRGRR 405

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
             + + ++G  ++  + +   ++  +N  ++P+     P+L+ +    +     E      
Sbjct: 406  DAPIQVVGLGDATGVPYARTVILPMNSDIFPRRPFSGPYLNLIHLPRIYRTQYEADDLAL 465

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                       H+         + P+    +L      G       +          +  
Sbjct: 466  RQFLSFGRTA-HIAALYDQANGDAPSAHFSFLA--TEFGQRMVKRRMVPAALRGPAGSLV 522

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK-DP 803
            ++ T +     R            T+SFS +K     P       +  +     F+  D 
Sbjct: 523  IENTDELKERLRR----------HTWSFSSLKNFFTCPCRFILEDMEAVKPPSCFEDKDS 572

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
                 G   H    EL + R      +     +   D     +     +    + +    
Sbjct: 573  TNLLIGEFLHRFFAELKEHRPAVLHWQELFDTRWESDEDLRMKLPDQAVR---KAIVQSH 629

Query: 864  SHSFLEHEEKIQSSI----EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
                   E++   SI    E     +            L G  DR+       + ITD K
Sbjct: 630  LADIAAWEKETGRSILFSDEVTEAELELSAPFGGGRYRLKGRIDRLQRDGDQTL-ITDLK 688

Query: 920  TGDNPKKETAQKLID-----------PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
              +        +L+D            QL + A        +       A+L ++R + +
Sbjct: 689  YKEKKTYAEKDRLVDRLEKTDVFDDRFQLLIYAYLALQNKRATPGLLDAAHL-FLRPRMR 747

Query: 969  FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
               +     +   + D   E     L  ++ L     + F  + R          Y  L 
Sbjct: 748  GDYEGHLAKEDLDACDATMEGIAGRLDALLAL-----ERFTPNFRA--DGCSYCPYKALC 800


>gi|19552081|ref|NP_600083.1| helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389744|ref|YP_225146.1| ATP-dependent helicase PcrA [Corynebacterium glutamicum ATCC 13032]
 gi|21323620|dbj|BAB98247.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325079|emb|CAF19560.1| ATP-DEPENDENT HELICASE PCRA [Corynebacterium glutamicum ATCC 13032]
          Length = 763

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 89/745 (11%), Positives = 210/745 (28%), Gaps = 98/745 (13%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +    RY  ++P     +     T +A  E+R    ++ G  +  +  + +  
Sbjct: 43  TAVLTRRIAYLMRYRGVHPQ---QILAITFTNKAAAEMRERVSQLVGPVAERM-WVATFH 98

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            V                         + + R        L         +    L    
Sbjct: 99  SVC------------------------VRILRQQAQLVEGLNTNFTIYDSDDSRRLLTMI 134

Query: 143 ANAIWL------AKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYW 195
           A  + L      A+ L   I  ++ E     E L   +        ++A  F       +
Sbjct: 135 AKDLELDIKKFSARTLLGAISNLKNELVTPQEALADAERTHNPYETVVARAF-----SEY 189

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVA 250
             RL   NA          +R   EH       +     ++I     +  A   L+ST+ 
Sbjct: 190 QSRLRRANAVDFDDLIGETVRIFREHPPVAEYYRRRFRHVLIDEYQDTNHAQYELISTLV 249

Query: 251 NHPN--GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
             P+   + +    D       +   T ++      + +               L+    
Sbjct: 250 GKPDQDPSELCVVGDSDQSIYAFRGATIRNIEEFERDFS---------NARTILLEQNYR 300

Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
             + + + +N +  ++       L     +                    +    ADNE 
Sbjct: 301 STQTILSAANAVISQNENRRPKNLWTALGEG-----------------EQIIGYVADNEH 343

Query: 369 EEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
           +EA  IA  +   +D   +    A++    N +R ++    R G+   +  G        
Sbjct: 344 DEARFIASEIDNLVDHGMSYSDIAIMYRTNNSSRALEDVFMRTGVPYKVVGGTKFYERKE 403

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              + + L  +   +D + +  ++  P    G   +      +    ++           
Sbjct: 404 IRDIIAYLRVLENPDDTVNLRRIINTPKRGIGDRAQAFIALHSENNQISF---------- 453

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
             ++L+   +                  E  +     +  ++  +T L       +    
Sbjct: 454 -GQALLDAALGKVDLLGARGKNAVIKFNELFDALRSELPTMVNEVTGLPDIGQVISRILD 512

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                   + +        LD   +L ++  E      + + ++ +  G     +   ++
Sbjct: 513 ITGYKAELEASNDPQDGARLDNLNELVSVAREFSSDAANRMVNE-VPEGEAQPGSLQAFL 571

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
           + ++ + D + +      +  + ++    ++ L F  + L G  +G +P   +       
Sbjct: 572 ERVSLVADADQI--PDSDNGVVTLMTLHTAKGLEFPIVFLTGWEDGQFPHLRSLGDAKEL 629

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
             +  L      +   +      M          RS   N +    SR+LQ +       
Sbjct: 630 AEERRLAYVGITRARKRLYMTRAML---------RSSWGNPVTNPPSRFLQEVPAELIDW 680

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQ 751
             +  +         TR +   T+ 
Sbjct: 681 RREEPQMSSAWAPRPTRSIPTKTRT 705


>gi|300932820|ref|ZP_07148076.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens
           DSM 45100]
          Length = 1224

 Score = 99.2 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 79/706 (11%), Positives = 184/706 (26%), Gaps = 94/706 (13%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKST--------------------ILPIIKSLGDVV 85
            V     T++A  EL     +     +                     + P I +     
Sbjct: 84  QVLGLTFTRKAASELAQRVRKRLETLANSPMYAAALGADDPRHEWFKNVAPTIAT----- 138

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
            + +   ++  Y L  P+    R++  A   LI    + +    L  +  ++  IS   A
Sbjct: 139 YDSYAGTIVREYGLLVPMEPAGRIIGDAEQWLIAHEVVTNYGGALKTDKGVNTVISNVQA 198

Query: 146 IWL-AKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKI---------A 191
           +   A++    +D ++ E +      EDL + K      +     +F++           
Sbjct: 199 LSNEAQSHLADLDTVDRESQLAIQDLEDLSSTKKNDSSFFSDANKEFIEAQNVRVQMLGI 258

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLM 246
            + + E L + +  +             +H       +     +++     +  A   L+
Sbjct: 259 VREYRETLRKRDLMTFDQQMSIAAELVTKHPRVGEEQRQRFRVVMLDEYQDTGQAQRVLL 318

Query: 247 STVANHPN--GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
            ++       G  V    D      ++   T  +     ++                   
Sbjct: 319 RSLFGEGKDPGLAVTAVGDPMQSIYMFRGATASNLEKFRADFA----------------- 361

Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
               +   L            + +               ++    P        V +   
Sbjct: 362 --PAEKLELTTSWRNPSLVLNLANVVSRWSMED----RPLVSALNPREGSEEGTVRVAFH 415

Query: 365 DNEREEAISIAIALRMSLDENKKK-------SALITADRNLARRVKLELTRFGINIDISA 417
           D++ +E   +A  +    +   K        +A++      A  +   L   G+  ++SA
Sbjct: 416 DDKNQEIQWLAEHVAEHWETWVKSDQEKPFSAAVLVRRNADAVPIYEALKEMGVPAEMSA 475

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-----RAKNALE 472
           G  L        + S L  +   +D  A+ +LV       G  +         +   A  
Sbjct: 476 GPGLLELPEVKQVFSTLRVLVDPSDDEAVLSLVTSSRWALGAADIKALSDRAKQLHRAQL 535

Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNT--HVPHWQSRLSEEDKELAVLLVDHILQ- 529
                       +  L+ +   +      +    V       +    +    L D     
Sbjct: 536 ETGDTSAPADQRLQPLEDVFAKQPGQNLRDELQGVMEDPVAGAVGLGDALADLGDATDFG 595

Query: 530 -------CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF---EE 579
                   +  L            + S+ D        L        R            
Sbjct: 596 MSAEGSARLEKLSAELGFLRRHSMSKSLPDLVADIERMLGVRTEVITRWYSEPEHSIGTS 655

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                + +     E      +  +E++       DG       +K + + IL   +S+ L
Sbjct: 656 HLDRFAEIVRSFSEISGASASTLVEYLLAAKEKEDGLETGEVTQKENLVQILTVHKSKGL 715

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            +D + +       +           +  ++   L T  +   +  
Sbjct: 716 EWDLVAVPHAGRATYTDAEKPTTRGYKWTKNASRLPTHLRGDAEEY 761



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/341 (11%), Positives = 74/341 (21%), Gaps = 31/341 (9%)

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
            LN+ +      +                      QA                R       
Sbjct: 898  LNDVLAFNEARQTFTDEMEKNPASGRDADSWPREQAPLLAARPGAAEGAQLVRDALHGVE 957

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
             +  ++  Q       T                T   ++  +  H               
Sbjct: 958  ESFTAQAAQNQEPAQATQNPVATTSPQAPRTAITTAENWDVETTHLLEELRAEETATIEV 1017

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
                                   +       +  P    RGT FHN + +   +    + 
Sbjct: 1018 PLDVRLTATEAVGLRRDRDEFARRRRRPVPLEPKPFAK-RGTAFHNWVEQHYGQVTLLDD 1076

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
             ++       +                       +   FLE E   ++        I   
Sbjct: 1077 EQLPGASDATLQD----------------PALEHLKQRFLESEWASRAPAS-----IEGA 1115

Query: 889  MAIESIGIHLTGFADRIDL---LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
             ++   G    G  D +       +    + D+KTG  P           QL++   A  
Sbjct: 1116 YSVALAGHVFEGRIDAVFHFSDDPAKGWMVVDWKTGKKPAGAEMNAAK-MQLAVYRLAWA 1174

Query: 946  AGSFSQIDCRKV-----ANLFYIRLKQKFKIDCITNDKKKY 981
                SQ+          A   Y+   +  + D + + K+  
Sbjct: 1175 QVLSSQLGIAVPVEEVRAAFHYVYANETVEPDTLPSAKEIE 1215


>gi|304396687|ref|ZP_07378567.1| exodeoxyribonuclease V, gamma subunit [Pantoea sp. aB]
 gi|304355483|gb|EFM19850.1| exodeoxyribonuclease V, gamma subunit [Pantoea sp. aB]
          Length = 1125

 Score = 99.2 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 99/940 (10%), Positives = 223/940 (23%), Gaps = 93/940 (9%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              AS  + V +    Q L+ E  +  G  + I      L      +    +L    +  
Sbjct: 28  DPFASEMVLVQSPGMAQWLQMELAQTFGIAANIE---FPLPASFIWEMFVRVLPDIPVES 84

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             S      +L   + +   +             L           L+  +AD+ D    
Sbjct: 85  AFSKASMGWKLMHRLPVMLEQEEFTSL----RHYLHDDGDKRKLFQLSARVADLFDQYLV 140

Query: 162 EEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
               W +        +           L      +T+ L +             ++   +
Sbjct: 141 YRADWLNSWERGETIEGLGEAQRWQAALWRDLVSYTQALGQPEW-HRANLYSRFIQTLGQ 199

Query: 221 HLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                      + I G +   P   + +  +  H +  ++           I +      
Sbjct: 200 AKSTPENLPKRVFICGISALPPVYLQALQALGRHIDIHLLFTNPCRDYWGDIQDYAFLAK 259

Query: 279 TNITSSNTTYST-------------------HPQYSLAKLLDFLDIKREDVKRLG----- 314
                     +                      Q     LL        D   L      
Sbjct: 260 LQSRQRRRHGADESRGLFRDAEQAPALFNDAGEQQLTNPLLASWGKLGRDNLFLLSQMDS 319

Query: 315 ----------NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                        N ++     +                   ++   +      +A+   
Sbjct: 320 NDDIDAFVDVEPDNLLHCMQHDLLNLQDNAVIGLNAAELAHSDQKRCLDPADRSIAVQVC 379

Query: 365 DNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFGINIDI 415
            + + E   +   L   ++ +     +   ++ AD +        +         +   I
Sbjct: 380 HSAQREVEVLQDHLLAMMEADPTLKARDIIVMVADIDAYAPFIQAVFANAPADRYLPFAI 439

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALEL 473
           S                LL           +  L+  P     F   E  L   +  +  
Sbjct: 440 SDRRASQAHPAIVAFLHLLALPDSRFVSEDVLALLDVPALASHFAIDESGLRLLRRWVSE 499

Query: 474 VALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV-D 525
             +R   +   +  L        +                H          + +  L  +
Sbjct: 500 SGVRWGLDDASVEALSLPVTGQHTWRFGLQRMLLGYAMESHNGDWEGILPYDESGGLAGE 559

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
                   L      +        ++ W  L    L      +      L   E  +   
Sbjct: 560 LAGHLAELLSRLNHWRQRLAEPRPLAAWLPLCRELLNAFFSPDAETEAALLLVE--EQWQ 617

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
            L    ++             D +   +D + +  +      +     +  R + F  + 
Sbjct: 618 QLIEYGMDARFEEAIPVALLRDDLRSRLDQQRISQRFLAG-QINFCTLMPMRSIPFQLVC 676

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR- 704
           L G+N+GV+P+  A   F     QS    ++             M +  R L  +   R 
Sbjct: 677 LLGMNDGVYPRTLAPLGFDLMQQQSRKGDRSRRDDDRYL-FLEAMISAQRQLYISYIGRA 735

Query: 705 -ENNIPTIASRWLQRLLV-------LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
            ++N     S  +  LL        L G    +  +   +  +                +
Sbjct: 736 IQDNTERYPSVLVTELLEYIGQSFYLDGDGHLELDESAERVRMHLQHLHSRMPFAAENFK 795

Query: 757 PKPFPPLEAQPRTYSFSEIKQLIND---PYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
           P       A+    +   + Q   D   P        L L+ +  F + P R        
Sbjct: 796 PAARLQSFAREWLPAAQGMGQPQPDFVQPIEAPVTDALTLEALLRFWRHPVRAWFHQRLG 855

Query: 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFHKISH--SFLE 869
                   +  +     +++L +  I++      +       +   H         +F E
Sbjct: 856 VSFWLEEDELPDSEPFSLDNLERYQINAQLLNALVEGEDTQRLYTYHRAAGNLPYGAFGE 915

Query: 870 HEE-KIQSSIEKIFVNI--------PAKMAIESIGIHLTG 900
                 +  ++++   +          ++ ++   + LTG
Sbjct: 916 LFWQAQRDEMQEVAAEVVTQRSDGESWEVNLQLEQVSLTG 955



 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 78/737 (10%), Positives = 176/737 (23%), Gaps = 72/737 (9%)

Query: 50   YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV----VEEKFTADLLLSYNLNPPVSN 105
                  A + L     +    ++   P I +   +         + D+L   ++    S+
Sbjct: 425  VFANAPADRYLPFAISDRRASQA--HPAIVAFLHLLALPDSRFVSEDVLALLDVPALASH 482

Query: 106  IQRLLELARLILIWRNKLP-DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+  W ++       D      LSLP++  +          +   +E+   
Sbjct: 483  FAIDESGLRLLRRWVSESGVRWGLDDASVEALSLPVTGQHTWRFGLQRMLLGYAMESHNG 542

Query: 165  KWEDLHALKNE-----KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             WE +           +           L     +W +RL E    +        +    
Sbjct: 543  DWEGILPYDESGGLAGELAGHLAELLSRLN----HWRQRLAEPRPLAAWLPLCRELLNAF 598

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                  T+  +++            + +        A++   L   +     +       
Sbjct: 599  FSPDAETEAALLLVEEQWQQLIEYGMDARFEEAIPVALLRDDLRSRLDQQRISQRFLAGQ 658

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD---- 335
                +     + P   +  L     +    +  LG    +   R    S+          
Sbjct: 659  INFCTLMPMRSIPFQLVCLLGMNDGVYPRTLAPLGFDLMQQQSRKGDRSRRDDDRYLFLE 718

Query: 336  ----TSDMRNTDILENKIPNIQKCFSDVALIEA-----------DNEREEAISIAIALRM 380
                         +   I +  + +  V + E             +   E    A  +RM
Sbjct: 719  AMISAQRQLYISYIGRAIQDNTERYPSVLVTELLEYIGQSFYLDGDGHLELDESAERVRM 778

Query: 381  SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
             L     +      +   A R      R  +      G P         +  +   +   
Sbjct: 779  HLQHLHSRMPFAAENFKPAAR-LQSFAREWLPAAQGMGQPQPD-----FVQPIEAPVTDA 832

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALE------LVALRGNKNSYDIMDLKSLVLD 494
                A+    +HP+  +      +S      E             +   +   L +LV  
Sbjct: 833  LTLEALLRFWRHPVRAWFHQRLGVSFWLEEDELPDSEPFSLDNLERYQINAQLLNALVEG 892

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW- 553
                +    H            +       D + +    +VT +++  S   NL +    
Sbjct: 893  EDTQRLYTYHRAAGNLPYGAFGELFWQAQRDEMQEVAAEVVTQRSDGESWEVNLQLEQVS 952

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                +T +Q   L   R       +     L  L    +      +    +        +
Sbjct: 953  LTGWLTQVQGDGLLRWRPGVLNMNDGLLLWLEHLVYCALGGTGSSRMFGRQQSRWCFLAV 1012

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
              +                     L  +    L G+ + +   N +   +L+        
Sbjct: 1013 SQQEAIAA----------------LNEYVAGYLAGMRQPLMLLNRSGGAWLTASYDKKSQ 1056

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
                ++                 L+   S         +  +LQRL  +        + +
Sbjct: 1057 QLLTDEA--------TQLKARNRLLTAWSGNYQVEGEGSDPYLQRLCRVLDVPQLQQITE 1108

Query: 734  RGQCYLDWTRKLDYTTK 750
              Q +           +
Sbjct: 1109 AAQRWYLPVLAAHQDDE 1125


>gi|323704722|ref|ZP_08116300.1| hypothetical protein ThexyDRAFT_0591 [Thermoanaerobacterium
            xylanolyticum LX-11]
 gi|323536184|gb|EGB25957.1| hypothetical protein ThexyDRAFT_0591 [Thermoanaerobacterium
            xylanolyticum LX-11]
          Length = 1036

 Score = 99.2 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 95/294 (32%), Gaps = 35/294 (11%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---- 825
             S S +   +  P+  +   +L +       +   + + G+ +H I+ +   +  +    
Sbjct: 735  LSASSLNSYVACPFRFFVETLLDIKVSDESIEF--KKNMGSTYHEILMKYYSENKDLYDV 792

Query: 826  --KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF---LEHEEKIQSSIEK 880
              +   ++   + + +D       L      ++  +F  I       L + +K  + +  
Sbjct: 793  NEERLKDVIDKICENLDGIKNDIILEKFKKEMYDTIFKLIVDDISNRLNYYKKTGAELIP 852

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDLLKS------GFVDITDYKTGDNPKKETAQKLID 934
            + +    ++     G    G  DRIDL +S      G   I DYK G           +D
Sbjct: 853  LMLEKKFEIDSHYGGYRFYGKIDRIDLERSIDGNLTGKYLIYDYKLGAVGGLRQCIDGLD 912

Query: 935  PQLSLEAAALKAGSFSQIDCRKVA--NLFYIRLKQ-------KFKIDCITNDKKKYSADE 985
             QL     A +    ++   +  +   L Y  ++          +             D 
Sbjct: 913  FQLPTYYMAAEEILINEFGIKNPSCLGLLYYSVENIKRNGIMLDEYKKYLFKGNAGPRDV 972

Query: 986  LSEKSLKNLIEIVT--------LLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031
            LS+ S   +++ +          +  G    +      + SNI+  Y  + R  
Sbjct: 973  LSKSSFDVIMDWIEKKGIENVGKMMTGSFN-LPEECPYDDSNIRCPYVSICRYD 1025


>gi|262039833|ref|ZP_06013107.1| exodeoxyribonuclease V [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042802|gb|EEW43799.1| exodeoxyribonuclease V [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 946

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 101/950 (10%), Positives = 235/950 (24%), Gaps = 113/950 (11%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP          + V +    Q L+       G  + I     
Sbjct: 11  DVLEALMEFIVERQRLDDPFQAE-----MVLVQSTGMAQWLQMTLAARFGIAANIE---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         S      +L  L+     +       +     LS  
Sbjct: 63  PLPASFIWDMFVRVLKDIPGESAFSKQSMSWKLMTLLPQHLEED----DFILLRQYLSDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   LA  +AD+ D       +W          +           L  A   +T  
Sbjct: 119 GDKRKLFQLAARVADLYDQYLVYRPEWLMRWEAGQRVEGLGDAQQWQAPLWQALVSYTAE 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             +    +           + I G +   P   + +  +  H +  
Sbjct: 179 LGQPQW-HRANLYQRFISTLEKADEPPAGLPSRVFICGISALPPVYLQALQALGKHVDVY 237

Query: 257 IVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYSLA 297
           ++      +    I                      +        +         Q    
Sbjct: 238 VLFTNPCRYYWGDIKDPAFLAKLLSRQRRHHREARALPLFRDTEQAPGLFNDAGEQNVGN 297

Query: 298 KLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLAGLERYEELDAFVDIAPDNLLHNLQSDILELRNAAVAGQSAEA 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
                    +      +++    + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 FAHSRDKRPLTLDDRSLSIHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +             IS      +        +LL+          +  L+  P
Sbjct: 418 YSPYIQAVFGAASGDRWLPWAISDRRARESHPVLQAFITLLSLPDSRFASEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504
           +   +F   E+ L   +  +    +R   +  ++ +L        +              
Sbjct: 478 VLAARFNITEEGLRYLRQWVNESGVRWGMDDDNVRELDLPATGQHTWRFGLTRMLLGYAM 537

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   S    + +  L+  ++  +   L+     +        +++W  +    L +
Sbjct: 538 DSREGEWQSVLPYDESSGLIAELVGNLASLLMQLNLWRRGLAQQRPLAEWLPVCRDLLND 597

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
             L +      L   E  +   ++    +E     +       D + + +D + +  +  
Sbjct: 598 FFLPDSETEAALALIE--QQWLAVIDSGLEAQYGEQVPLTLLRDELAQRLDQQRISQRFL 655

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + I   +  R + F  + L G+N+GV+P+      F   +M          +    
Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMSQKPQRGDRSRRDDD 712

Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLKK 733
                E        L  +   R   +N     S  +Q L         L G +  D    
Sbjct: 713 RYLFLEALMSAEQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHCLAGDEELDCDAS 772

Query: 734 RGQCYLDWT-----------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
             +     T                         L    +Q         P       + 
Sbjct: 773 EARVKAHITHLHTRMPFDVANFQEDENKSYAREWLAAAGQQGEAHSDFIQPLTAPPIDSL 832

Query: 771 SFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
            F ++ +    P   + ++ L+++          D   T  G   + +  +L+   I + 
Sbjct: 833 PFDQLLRFWQHPVRAFFQQRLRVNFRAEEDDIPDDEPFTLEGLSRYQLNQQLLNTLIEE- 891

Query: 828 TPEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
             +++ + ++               +    R     ++   +   ++ QS
Sbjct: 892 -QDVSAMFRRFRAAGELPYGAFGELVWETQRLEMQALAERVMAERQQAQS 940


>gi|300858060|ref|YP_003783043.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300685514|gb|ADK28436.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis
           FRC41]
          Length = 846

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 87/735 (11%), Positives = 194/735 (26%), Gaps = 89/735 (12%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +    R   + P     +     T +A  E+R     + G  ++ +  + +  
Sbjct: 92  TAVLTRRIAYLMRIRGVQP---GQILAITFTNKAAAEMRERVAHLVGPIASRM-WVSTFH 147

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                                         A+L+    +       D        +    
Sbjct: 148 STCVRILREQ--------------------AQLVAGLNSNFTIYDSDDSKRLLAMISKDM 187

Query: 143 -ANAIWLAKNLADI-IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
             +       L    I  ++ E        A        +    A         +  RL 
Sbjct: 188 NLDIKKFTPRLLGAGISNLKNELISPATAVAEAESTKNPYETTVAA----VYVEYQRRLR 243

Query: 201 ELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
           + NA          +R   EH       +     ++I     +  A   L+  +      
Sbjct: 244 QANAVDFDDLIGETVRIFKEHPQITEYYRRRFRHVLIDEYQDTNHAQYVLIHELVGTGET 303

Query: 256 A-IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
           A  +    D       +   T ++            +P  +   L       +  +    
Sbjct: 304 ASELCVVGDSDQSIYAFRGATIRNIEEFE-----RDYPNATTVLLEQNYRSTQTILNAAN 358

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
           +V ++   R                      + K+         +    ADNE +EA  I
Sbjct: 359 SVISQNENRR---------------------KKKLWTALGSGDPITGYVADNEHDEARFI 397

Query: 375 AIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
           A  +    D+  +    A++    N +R V+    R GI   +  G           + +
Sbjct: 398 AQEIDALADKGIDYSDMAIMYRTNNSSRAVEDVFMRSGIPYKVVGGTRFYERKEIRDVIA 457

Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            L  +    D +++  ++  P    G          +  + V+L+          +  L 
Sbjct: 458 YLRLLDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQGVSLQQALIDASEGQVSLLG 517

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                      ++       + E       + D I   I  ++     K     +    D
Sbjct: 518 ARGCNAISGFVNMMSGLRDSAAESVNEITGMPD-IGNVIAQILDITGYKAELEKSNDPQD 576

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS-SLFSKIIETGSCIKANAIEWIDIITR 611
             +L    L  +             +     +  S    +   G     +   +++ ++ 
Sbjct: 577 GARL--DNLNELVSVAREFSSEAANQVAYAKMDGSELDDLAAVGEPEPGSLQAFLERVSL 634

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
           + D + +     +   + ++    ++ L F  + L G  +G +P   A            
Sbjct: 635 VADADQI--PDNEQGLVTLMTLHTAKGLEFPVVFLMGWEDGQFPHLRA------------ 680

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL----RENNIPTIASRWLQRLLVLGGTD 726
             L   ++   +    +      R  L  TR++      N +   ASR+L  +       
Sbjct: 681 --LGDPKELAEERRLAYVGITRARKALYITRAMLRSSWGNPVTNPASRFLTEIPQELLDW 738

Query: 727 FFDNLKKRGQCYLDW 741
             +  +     +   
Sbjct: 739 RREEPESSFDAWGQP 753


>gi|68536027|ref|YP_250732.1| RecB family exonuclease [Corynebacterium jeikeium K411]
 gi|260578719|ref|ZP_05846627.1| RecB family exonuclease [Corynebacterium jeikeium ATCC 43734]
 gi|68263626|emb|CAI37114.1| putative RecB family exonuclease [Corynebacterium jeikeium K411]
 gi|258603216|gb|EEW16485.1| RecB family exonuclease [Corynebacterium jeikeium ATCC 43734]
          Length = 266

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 81/266 (30%), Gaps = 28/266 (10%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S        P     R I KL+             +GTL H ++  L +      T
Sbjct: 6    ALSPSRANDYKQCPLLYRFRAIDKLEEPSTV-----AQVKGTLVHAVLENLHQLPRGSRT 60

Query: 829  -PEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
             P    +++   +    K     E +P    + +      +   + + E       +   
Sbjct: 61   YPAAVKMIRPEWEKMLAKDPELSELVPEQSTVEFWEECRALVKGYFQMEN--PDGFDAHE 118

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
                  + +    + + GF DR+D+ ++G V + DYKTG  P    A      Q+   A 
Sbjct: 119  CEQFVNLTLP-NDVPVRGFIDRVDIAETGQVRVVDYKTGKKPAPRFADSAR-FQMMFYAL 176

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
                    ++  +    L Y+++     +     +              + L E+   + 
Sbjct: 177  VWWR-MTGELPTQ--LRLMYLKVSDDMVLQPTATE---------LAAFERELGELWGRIL 224

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028
               +      R + K      +  L 
Sbjct: 225  ADVRSGNFQPR-TTKLCGWCHFQDLC 249


>gi|319761999|ref|YP_004125936.1| uvrd/rep helicase [Alicycliphilus denitrificans BC]
 gi|317116560|gb|ADU99048.1| UvrD/REP helicase [Alicycliphilus denitrificans BC]
          Length = 796

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 70/672 (10%), Positives = 149/672 (22%), Gaps = 56/672 (8%)

Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171
           LA L   ++                   +         K LA  I   + E  +  D+ A
Sbjct: 112 LAGLPQSFQILDTQDQLSAVKRLCKQFNVDEERFPP--KQLAYFIAGCKEEGLRPRDVEA 169

Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGT 226
             ++                 + + E+             +       ++       +  
Sbjct: 170 HDSDTRKK---------VELYQLYEEQCQREGVVDFGELMLRSFELLRDNDPVRVHYQRR 220

Query: 227 KGPIIIAGSTGSIPATARLMSTVA------NHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              I++     +       +  +A             V+   D       +      +  
Sbjct: 221 FRHILVDEFQDTNRLQYAWLKQLAGDVVDGRLVTQGSVIAVGDDDQSIYAFRGARVGNMQ 280

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                                                 ++       S      +     
Sbjct: 281 DFVREFDVR--------------------------HQIKLEQNYRSYSNILDSANALIAH 314

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRN 397
           N+  L   +   Q     V + EA  +  EA  I   +R  + E    + + A++     
Sbjct: 315 NSRRLGKNLRTTQGPGEPVRVYEAPTDLAEAQWIVDEIRQLVREGPMPRSEIAVLYRSNA 374

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    +   +  G+            + L  +   +D  +   +V  P    
Sbjct: 375 QSRVIESALFNASVPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFMRVVNFPPRGI 434

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G       +        +L    +S       +L                   R      
Sbjct: 435 GARTLEQLQDAARGSGCSLHDAVSSVPGKAGVNLGAFVAMVDVMREQTQGRNLRAIIGQV 494

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             +  L++H           +          S     +        + LDE         
Sbjct: 495 LESSGLLEHYRNEKEGADRLENLDELISAAESFV-TQEGFGRDAVALPLDETGAALTQSP 553

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
             +G   +    +     +            +T                 + ++    S+
Sbjct: 554 ASQGLDPNRPLLQQPLVDTDTGETLSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHASK 613

Query: 638 LLNFDTLILGGLNE--GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
            L FD + +GG+ E         +    L    +      T  +     +H        +
Sbjct: 614 GLEFDCVFIGGMEEGLFPHENAMSDQGGLEEERRLMYVAITRARKRLYLSHAQTRLLHGQ 673

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                RS   + +P  A +WL       G   +    +    Y    R            
Sbjct: 674 TRYNVRSRFFDELPEEALKWLT--PRQQGFGSYAPDSRAASAYGAGARAGFGFNAAAFAS 731

Query: 756 RPKPFPPLEAQP 767
            P P    E   
Sbjct: 732 PPVPPRKEEPAH 743


>gi|26991358|ref|NP_746783.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas putida KT2440]
 gi|24986422|gb|AAN70247.1|AE016664_3 exodeoxyribonuclease V, gamma subunit [Pseudomonas putida KT2440]
          Length = 1160

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 112/986 (11%), Positives = 262/986 (26%), Gaps = 108/986 (10%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79
           L   +V   R  PL P  L +    V +    Q L+          +  G        ++
Sbjct: 22  LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPLEDDQGGCGIAAAIDVQ 79

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             G  + + + + L  S    P VS + +     RL+ +    +     +      L+  
Sbjct: 80  LPGSFMWQLYRSVLGRSE--IPEVSLLDKAPLTWRLMRLLPALIERPHFEPLRRF-LTDD 136

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-----GMWWLLAADFLKIASKY 194
                   LA+ LAD+ D  +     W  L      ++          +     +  ++ 
Sbjct: 137 SDLRKRYQLAERLADLFDQYQVYRADW--LKDWATGEHVINTARGERKVLPPGNRWQAEL 194

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMST 248
           W   L ++        +  + +   E +    + P      +I+ G +         ++ 
Sbjct: 195 WRALLEDVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPPRVIVFGISSLPAQALEALAG 254

Query: 249 VANHPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
           ++      + +     H    I             ++            T  Q++   L 
Sbjct: 255 LSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQTLHQHAHPLLA 314

Query: 301 DFLDIKREDVKRLGNVSNE-------MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            +    R+ +  L +  +          GR  + S        +++++  +    +   +
Sbjct: 315 AWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSDGSPTTLLNELQDDILELRPLAESR 374

Query: 354 KCFS--------DVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARR 401
           + +          +    A + + E   +   L            +   ++  D +    
Sbjct: 375 ERWPAVDTTKDRSIRFHIAHSPQREVEILHDQLLARFSADPTLRPRDVIVMLPDIDTYAP 434

Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP- 453
               +           I   ++             L  LL           +  L+  P 
Sbjct: 435 HIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSRFAVSEVLDLLDVPA 494

Query: 454 -LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHV 505
             A+FG  E  L      +E   +R   ++     L       ++     +        V
Sbjct: 495 VRARFGIRENDLPTLHRWIEGAGIRWGLDAAQRASLGLPAGLEQNSWRFGLRRMLLGYAV 554

Query: 506 PHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
              ++    E  +    L    I   +  L   +    +     ++S W +     L   
Sbjct: 555 GVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVACQALSEPATVSQWGERLHALLHVF 614

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
            L E      L  +       S        G           +     +D   +  +   
Sbjct: 615 FLAEDEGDEFLLMQ-LQDLRDSWLEVCETVGLHDPLPLTVVREAWLSGLDQGKLSQRFLA 673

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
             ++     +  R + F  + L G+N+G +P+      F           ++  +     
Sbjct: 674 G-SVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQPPLDFDLMASDYRPGDRSRREDDRYL 732

Query: 685 AHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                + +    L  +   R   +N    AS  + +L       +     ++GQ      
Sbjct: 733 -LLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHIAAGWHLADAQQGQPARPGE 791

Query: 743 RKLDYTTKQPHY-------------------------------KRPKPFPPLEAQPRTYS 771
           + L   T++                                   + +P  P        S
Sbjct: 792 QLLHALTQEHPLQPFSPRYFQKGSPLFSYAHEWQVLHQQGETDAQSEPGLPPYQDAEALS 851

Query: 772 FSEIKQLINDPYAVYARRILKL--DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             ++   +  P   +  + LK+  + +     D +     TL     +E +         
Sbjct: 852 LHQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDTLQRYGASESLLGAALAEPD 911

Query: 830 EINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                ++           LP      + ++   +     L+  +++        V     
Sbjct: 912 NAEQALRAQARRLQACGLLPLAGFGELLQNELIEPLPDLLQRHQQLLQRW-PQLVEGALP 970

Query: 889 MAIESIGIHLTGFADRIDLLKSGFVD 914
           +  E     L G+  R+   +   + 
Sbjct: 971 VHFEHGQHRLEGWLGRVFQAEDQSLL 996


>gi|296448609|ref|ZP_06890479.1| double-strand break repair helicase AddA [Methylosinus trichosporium
            OB3b]
 gi|296253881|gb|EFH01038.1| double-strand break repair helicase AddA [Methylosinus trichosporium
            OB3b]
          Length = 1145

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 87/842 (10%), Positives = 198/842 (23%), Gaps = 95/842 (11%)

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
            LA + D  +      E   A       M      D +    +         +    +   
Sbjct: 314  LARLEDERDRLVALIERRKAAAAFDRSMALAAIGDAILSDYERMKSNRGLFDFDDLIERT 373

Query: 212  IALMRAEAEHL----MKGTKGPIIIAGSTGSIPATARLMSTVAN--------HPNGAIVL 259
              L+   +       +      I++  +  +  A   +++ +A                 
Sbjct: 374  RRLLLRSSAGWVLYKLDSQIDHILVDEAQDTSAAQWDILAALAAEFCAGASARRAARSFF 433

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYS---THPQYSLAKLLDFLDIKREDVKRLGNV 316
               D       +     +  +                +   +L        + +  + ++
Sbjct: 434  AVGDEKQSIFSFQGAAPEKFDAMRRVFAGRFRDARMSFETVRLTRSFRSSPDVLAAVDDI 493

Query: 317  SNEMYGRSMVISKSFLPPDTSDMR------NTDILENKIPNIQKCFSDVALI-----EAD 365
                  R  + +    P    +          +I E +  ++ +   D  L      +A 
Sbjct: 494  FAHEGNRRGLSADPQEPAPQHEAWKADVRGRVEIWEPESADVAEAPPDWRLPLDYVNDAT 553

Query: 366  NEREEAISIAIALRMSLDE----------------NKKKSALITADRNLARRVKLELTRF 409
                 A  IA   +  L                        L+         V   L   
Sbjct: 554  PAARLARKIARRTKALLAPENGECVEDKGAIRAMRPGDVMILVRKRDAFFEAVIRALKAE 613

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            G+ +  +  + LS  +    L +L  A     D + +A L+K PL      +        
Sbjct: 614  GVAVAGADRLDLSGHIAVMDLVALGRAALLREDDLTLAVLLKSPLVGLDDDDLIALAPGR 673

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
            +  L             +  +L+       +       +                  +  
Sbjct: 674  SGSLHDALAASPQPRHAEAAALIAHWSRLARTLAPFDFYS-----------------LAL 716

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                       +     N +I ++ +L     +         L ++   E   ++     
Sbjct: 717  GAGGGREKLVARLGVEANDAIDEFLRLASAFEREQAQTLTGFLASVEALEL--SIKRDME 774

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            +  +    +  +A + ++     +      P       LF+LG  +        +   G 
Sbjct: 775  QAGDAVRVMTVHAAKGLEAKVVFLPDTCGAPAGHHDPKLFVLGEED----EAALVWSTGK 830

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
            +        A+             L        +        +G R              
Sbjct: 831  DADPPAVARARETLREAARDEHRRLLYVALTRAEERLYIAGFHGPRGRAEDCWYDAIRDA 890

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
               S            +                 + +      +  +P P     A P  
Sbjct: 891  LEPSCARAPDPFEATKEILVRGDAARGRVQATPAREERVVLPAYALQPAPRESAPAPPLR 950

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
               + +      P A               ++D +R   G L H ++  L      +   
Sbjct: 951  -PVTALAAADRIPVADEYA--------STTRQDGERLLIGRLTHALLQRLPDTPPERREA 1001

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
                 +          E     +D   R    + + + +     +     +    +    
Sbjct: 1002 AARKFL----------ELRAVSLDEAQRERVARAALAVIADRSLVALFGPRSAPEVEIVA 1051

Query: 890  AIES--IGIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETAQKLIDPQLSLEAAAL 944
             +      I +TG  DR+         + D+KTG     P +   +     QL++  AA 
Sbjct: 1052 RLMGSRGEIAVTGRIDRLAET-DSEAIVADFKTGAARNPPSRTQLR-----QLAVYRAAA 1105

Query: 945  KA 946
              
Sbjct: 1106 AQ 1107


>gi|293192899|ref|ZP_06609743.1| RecB family exonuclease [Actinomyces odontolyticus F0309]
 gi|292819955|gb|EFF78954.1| RecB family exonuclease [Actinomyces odontolyticus F0309]
          Length = 294

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 64/248 (25%), Gaps = 22/248 (8%)

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
           P           S S  K+    P       +                  GT+ H ++ +
Sbjct: 17  PSTAERTWEPALSASRAKEYERCPLQYRLHVLDGYREPETR-----AKALGTIVHAVLEK 71

Query: 819 LIKKRINKNTPEINH-------LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
           L      + TPE                +               W      +   +   E
Sbjct: 72  LFALPAQQRTPEAARGQVWPQYEALASKNPEVPALFSDDADRDAWLDEARAVVDGYFAIE 131

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
           +     I    +           G+ L GF DR+D    G + + DYKTG  P      +
Sbjct: 132 QPQW--IAPAALEQRVTTTTSG-GVRLLGFIDRVDRAPDGRLRVVDYKTGKAPGPRYVDE 188

Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
            +  QL   A  L             + +  + LK    I          S +   ++  
Sbjct: 189 ALY-QLRFYALLLAR------TQVLPSRMQLVYLKAGQVITFDPEAGDIASFERHIDQLW 241

Query: 992 KNLIEIVT 999
            ++   + 
Sbjct: 242 DSIARDIE 249


>gi|108762893|ref|YP_630835.1| hypothetical protein MXAN_2616 [Myxococcus xanthus DK 1622]
 gi|108466773|gb|ABF91958.1| hypothetical protein MXAN_2616 [Myxococcus xanthus DK 1622]
          Length = 1079

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 92/733 (12%), Positives = 171/733 (23%), Gaps = 124/733 (16%)

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITAD 395
            R+          ++     + +  A   R+EA  +A  +R  L E       +      
Sbjct: 253 GRHLFSPRAPRDVLKDAVPSLRVWNAATARDEARLLARDVRRLLAEGVAPGDIAVAYREL 312

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              A  +   L   G+ + +  G PL       +   L   +        +A L+    A
Sbjct: 313 GPEAGWLAESLGELGVPVRLPWGEPLGLAGPVRLALDLPLLVEDGFPVERMAELMGSRYA 372

Query: 456 K-------FGFPEKYLSRAKNALELVALRG-NKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
                         +   A     L A+RG       +  L   +L    T+K       
Sbjct: 373 PKLSRGGPDAPATLFAQAAVRDDRLGAVRGRGAYDVRLDGLARRLLALNGTRKAQDSTRV 432

Query: 508 WQSRLSEEDKELAVLLVDHILQ---CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN- 563
              +L  E   L V     I +       L  +           S           L   
Sbjct: 433 DAVKLLRERCLLLVEACRRIPEEGTAAELLAAWWQVVERLGLVDSEGALAPREEGGLGAR 492

Query: 564 ----------------------------------VCLDEHRKLPNLWFEEEGKTLSSLFS 589
                                             +      +       +          
Sbjct: 493 AADARARDDAAREALRLRVQGLTRMMKAVGGGPKMRRRTFGRWLRDAMADAHLPPRGPRG 552

Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL-----------GTLESRL 638
             +E     +     + D+    +       +   S  L                     
Sbjct: 553 AAVEVLDVAELPGRSFQDLFLAGLTEGRFPGRDAPSPLLADAERAALNKHLGRDVFRLTG 612

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFL----------SRVMQSDLNLKTAEKYIGQAAHDF 688
             FD      L E      +A               S   Q  +     E+     A  +
Sbjct: 613 GEFDERAAWRLTEDRLLFASALAAAEANVSLSFAVESAGGQEQVPSAFLEEVRRLTALKW 672

Query: 689 EMANGTR----HLIYTRSLRENNIPTIA-SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
           E  + +       + T S     +   A S+   R+            +   + +    R
Sbjct: 673 EPRSLSPIPPLDEVLTESELRRCVALEALSQPKLRVTEPDAAAAVLRRRFAPEAWYAGAR 732

Query: 744 KLDYTTKQ------PHYKRPKP---------------FPPLEAQPRTYSFSEIKQLINDP 782
           +L     +          +P P                       R  S S + +  N  
Sbjct: 733 ELSEVEMERLFFFGDPKVQPGPYSGSVDLDTQRESLRETFRFDITRPLSASALARFGNCG 792

Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR---------INKNTPEINH 833
           +  +    LK+       ++ D   RGT +H ++ E+               +   E+  
Sbjct: 793 FQGFLSYGLKVAEPDVPGEEFDARGRGTFWHKVVEEVFAALKEKQLLGKAPEEVPDEVLD 852

Query: 834 LMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK- 888
              +     FE+      P +  +       ++   L  E +      +           
Sbjct: 853 AALKAAIKDFERVHHVGHPELWKLAHERARAMARRILVDERRGLPFDTMTPENFEFRFGP 912

Query: 889 -----------MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDP 935
                      +      ++  G  DR+D    G V + DYK+G       +      D 
Sbjct: 913 AARDDKWSNVVLHAGEEPVYFEGTIDRLDKSG-GEVGVIDYKSGRLDKRSLKERLLTSDF 971

Query: 936 QLSLEAAALKAGS 948
           QL L   A +   
Sbjct: 972 QLPLYLYAARESG 984


>gi|154508756|ref|ZP_02044398.1| hypothetical protein ACTODO_01265 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798390|gb|EDN80810.1| hypothetical protein ACTODO_01265 [Actinomyces odontolyticus ATCC
           17982]
          Length = 284

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 67/248 (27%), Gaps = 22/248 (8%)

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
           P           S S  K+    P       +                  GT+ H ++ +
Sbjct: 7   PSTAERTWEPALSASRAKEYERCPLQYRLHVLDGYREPETR-----AKALGTIVHAVLEK 61

Query: 819 LIKKRINKNTPEINH-------LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
           L      + TPE                +               W      + + +   E
Sbjct: 62  LFALPAQQRTPEAARGQVWPQYEALASKNPEVPALFSDDADRDAWLDEARAVVNGYFAIE 121

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
           +     I    +       + S G+ L GF DR+D    G + + DYKTG  P      +
Sbjct: 122 QPQW--IAPAALEQRVT-TMTSGGVRLLGFIDRVDRAPDGRLRVVDYKTGKAPGPRYVDE 178

Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
            +  QL   A  L             + +  + LK    I          S +   ++  
Sbjct: 179 ALY-QLRFYALLLAR------TQVLPSRMQLVYLKAGQVITFDPKAGDIASFERHIDQLW 231

Query: 992 KNLIEIVT 999
            ++   + 
Sbjct: 232 DSIARDIE 239


>gi|322831717|ref|YP_004211744.1| exodeoxyribonuclease V, subunit gamma [Rahnella sp. Y9602]
 gi|321166918|gb|ADW72617.1| exodeoxyribonuclease V, gamma subunit [Rahnella sp. Y9602]
          Length = 1152

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 100/920 (10%), Positives = 220/920 (23%), Gaps = 98/920 (10%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT---GKKSTILPIIKSLG 82
           L   LV      PL+P  L +  I V +    Q L+          G        IK   
Sbjct: 16  LRDVLVSWMAAHPLSP--LENEVILVQSNGINQWLKLALARDVTDGGCGIAAALDIKLPA 73

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
               + + A  +L     P  S   R L   RLI +    L + +        L      
Sbjct: 74  RFFWQVYRA--VLGKEQVPESSPFDRPLLTWRLIRLLPELLAEPVFAPLARF-LKDDGDM 130

Query: 143 ANAIWLAKNLADIIDIIETEEKKW--EDLHALKNEKYGMWWLLAA-DFLKIASKYWTERL 199
                LA+ LAD+ D  +     W  +  + L   +          + L    + W   L
Sbjct: 131 RKLHQLAQRLADLFDQYQVYRADWLEDWGNGLDVLRTSRKGSEPLPENLLWQPQLWRALL 190

Query: 200 VELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAGSTGSIPATARLMSTVAN 251
            ++  +     + AL +    +                +++ G +     +  +++ +  
Sbjct: 191 ADVPENERNTSRAALHQRFLHYAQTIPEDQRPAGLPARLVVFGISSLPQQSLEVLAVLGR 250

Query: 252 HPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             +  + +     H  + I           I +                Q++   L  + 
Sbjct: 251 WTHIFMCVHNPCEHDWSDIIADKDLLRAERIRQLRKPGMPQVIAEDELHQHAHPLLAAWG 310

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD-----------------MRNTDILE 346
              R+ +  L    N     + +          +                      + ++
Sbjct: 311 KQGRDYIGLLNEYDNHESYAAQLAPVIPRIDLFTSNGTDTLLHQLQEDILQLRPLAETID 370

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRV 402
                  +    +      + + E   +   L  +L  +     +   ++  D N     
Sbjct: 371 EWPAADVQHDDSLRFFITHSAQREVEVLHDRLLAALAADPTLKARDIIVMVPDINGYAPH 430

Query: 403 KLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +           I   ++   P         L SLL           +  L+  P  
Sbjct: 431 IQAVFGLMERSDPRYIPFTVADQGPRQNNPLLGALESLLELPQSRFAVSDLLDLLDVPSV 490

Query: 456 KFGFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           +  F               +           R +       +  S               
Sbjct: 491 RQRFGIEEEQLPLLHRWIRAANVRWGLHAEQRQSLELPLSPEQNSWFFGLQRMLLGYAVG 550

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN-- 563
                +  E   E+  L    I      L                 +W +     L    
Sbjct: 551 SGEAWKNIEPLDEIGGLDAALIGPLSHLLNCLDDTWRQLREPAPPQEWGRRLRHILSQYF 610

Query: 564 -VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                E   +      E    L +  S  ++    +      W+    +     +   + 
Sbjct: 611 SEDDGEDGFILVRLHGELEIWLEACESVDLQAELPLSVVRDHWLAQFDQ-----SGLTQP 665

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                +     +  R + F  + L G+N+G +P+N     F           ++  +   
Sbjct: 666 FFGGAVTFATLMPMRAIPFRHVHLLGMNDGDYPRNRVPMDFDLMGRDYRPGDRSRREDDR 725

Query: 683 QAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFFD----------- 729
                  + +    L  +   R   +N     S  + +L       +             
Sbjct: 726 YL-FLEALLSARERLHISWVGRSIHDNTERPPSVLVAQLRDHLAAGWKAQSGEDLLHALT 784

Query: 730 ----------NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                     +   +G     +  +     +               Q    +  ++   +
Sbjct: 785 TEHRLQPFNRDYFSQGSPLFSYAHEWRAGLEAEAAAVAAQPLQPVEQESALTLRQLSDFL 844

Query: 780 NDPYAVYARRILKLD-FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
           +DP   + R+ L +   +     +           N   +    R  K   E     + +
Sbjct: 845 SDPVRSFFRQRLNIYFELEDPGSEDQEPFDINALENWRLQDELIRAQKWALEAGVSRQDV 904

Query: 839 IDSHFEKENLPPHIDIIWRH 858
           +    E+      +      
Sbjct: 905 LRQQLERIERRGELAPGEFA 924


>gi|319775123|ref|YP_004137611.1| exonuclease V (RecBCD complex) subunit gamma [Haemophilus
           influenzae F3047]
 gi|317449714|emb|CBY85921.1| exonuclease V (RecBCD complex), gamma chain [Haemophilus influenzae
           F3047]
          Length = 1085

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 89/740 (12%), Positives = 181/740 (24%), Gaps = 98/740 (13%)

Query: 56  AIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
             Q L+ E  + TG  + +   +P        + +   A  L +  L  P         L
Sbjct: 1   MAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNLPATALENPFDKDSMTWRL 54

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW------ 166
            RLI I+  K  +    L      S          L+  +AD+ D       +W      
Sbjct: 55  MRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIADLFDQYLVYRPEWIFAWEK 112

Query: 167 -------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE-----LNASSPVGYQIAL 214
                  + +   +       +       K   + W   +V+       A+         
Sbjct: 113 GEDEQITDQIQKQQPNLNATLFAQIQGNTKWQGELWRALVVDVKSDVNEATHRAALHNQF 172

Query: 215 MRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
           +   A+    K     I I G      A   ++  +++  +  +            I + 
Sbjct: 173 LALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDIHLFFNNPCQEYWGDISDL 232

Query: 274 ITEKSTNITSSNTTYSTHPQYSLA----------------------------KLLDFLDI 305
           + +   +            Q   +                                 +  
Sbjct: 233 LLDYLRSRKRYQLNKQDENQPLFSEDQLSQLENAQFDVTYQKENLQLGNLLLAAWGKMGR 292

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                          Y  +                    LENK  NI K    + L    
Sbjct: 293 DFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLENKPLNIAKNDRTLTLHSCH 352

Query: 366 NEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDI 415
           +   E   +   L    +++     K   ++ AD N        +          I   +
Sbjct: 353 SAMREVEVLHDYLLDLFNQDPSLTPKDVVVMMADINQYTPYIQAVFGQKNGDAPQIPFSL 412

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP----------EKYLS 465
           S      +    S   +LL           +  L+  P  +  F           E    
Sbjct: 413 SDNKLSESDALVSSYLTLLGLKESNFSAEDVLALLDIPAMRERFNISLADLPLVREWVAD 472

Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                       G   +     L+ ++L     ++            S   K      + 
Sbjct: 473 SGIRVGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDSLGLNSSYGLKGELAGNLS 532

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
           H    ++ L       +      SI  W ++    L +  +        +++ +      
Sbjct: 533 HFFTALSALHETLQQAH------SIEKWQEILTALLSDFFVRNEDTSDMIFYIQ------ 580

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEKSSTLFILGTLESRLLNFD 642
              +++ E    +        ++I  +I     +        +  +     L  R + F 
Sbjct: 581 EKINELAEHLKTLHFTEKLQAEVIADVITMKLEDAPNSLKFLAGKVNFCTLLPMRSVPFK 640

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTR 701
            + L G+N+  +P+    N F           +             E     R     + 
Sbjct: 641 VVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY--LFLEALLAARDYCYISY 698

Query: 702 SLRE--NNIPTIASRWLQRL 719
             R   +N P   S  + +L
Sbjct: 699 VGRSITDNQPKEPSVLVSQL 718


>gi|239944122|ref|ZP_04696059.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239990574|ref|ZP_04711238.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 1191

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 87/817 (10%), Positives = 201/817 (24%), Gaps = 74/817 (9%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90
               +    V     T +A  EL     +         P +       G+        F 
Sbjct: 57  GTGQVAPEQVLGLTFTNKAAGELAERVRKALIAAGVTDPDVIDPDNPPGEPTISTYHAFA 116

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL  + L   +    RLL  A        K+       YP    S     ++ + L  
Sbjct: 117 GRLLTEHGLRIGLEPSTRLLADATRYQ-LAAKVLREAPGPYPALTRSFSTLVSDLLALDG 175

Query: 151 NLADIIDIIETEEK-KWEDLHALKNEKYG-------MWWLLAADFLKIASKYWTERLVEL 202
            L++ +    T E    E L  L   K              A   L   ++ +       
Sbjct: 176 ELSEHLVRPGTLEAYDTELLRELAAAKLSNADLRKIPEAAEARRSLLGLTERYRTAKRSR 235

Query: 203 NASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH----- 252
           +              AL R E   +++     +++     +  A   L+S +        
Sbjct: 236 DLLDFGDQIALSAELALTRPEVGRILREEFRVVLLDEYQDTSVAQRLLLSALFGSGGTGS 295

Query: 253 ----------PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
                       G  V    D       W   +  + +    +  ++     +   L   
Sbjct: 296 GGSSGGTDPGAAGHAVTAVGDPCQAIYGWRGASVANLDDFPEHFPHADGTPATRYSL--- 352

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                         S        ++  +    +     +  +   +     +    V   
Sbjct: 353 --------------SENRRSGGRLLQLANGLAEPLRAMHEGVEALRPAPGAERDGMVRCA 398

Query: 363 EADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
                 EE   +A +L   +       + A++         ++  L    I +++     
Sbjct: 399 LLSTHTEEIDWLADSLAHLVRTGTPPGEIAVLCRTAGDFPEIQAALVARDIPVEVVGLAG 458

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
           L      + L ++   +       ++  L+  P  + G  +  L   +  L +       
Sbjct: 459 LLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRAGRAD 518

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
           ++     L   V      +  +         ++ +  +  +            L     +
Sbjct: 519 DADADRRLAEAVEGTDPAEVISLADALDTFLVAGDAADDGLPFSAEARVRFARLARELRD 578

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
              +  +  +    ++  T    V L    +       E       + ++          
Sbjct: 579 LRRSLADPLMDVLHRILATTGLEVELSASPQALAARRRETLANFLDIAARFASFDGEASL 638

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            A           +           +T+ +L   +S+ L +D + + GL  G +P   ++
Sbjct: 639 LAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGQFPSGQSR 698

Query: 661 NPF------LSRVMQSDLNLKTAEK----------YIGQAAHDFEMANGTRHLIYTRSLR 704
           + +      L   ++ D     A                  H         ++ +TR   
Sbjct: 699 DAWTAQAKVLPHALRGDAATLPALDSFDAKGIKAFKEEMKEHQHTEELRLGYVTFTRPRS 758

Query: 705 ENNIP---TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
                      S+   R         +++          W  +     + P         
Sbjct: 759 LLLGSGHWWGPSQKRTRGPSAFLEALYEHCAAGHGEIEAWADEPAEDEENPALAERDADL 818

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                    + +  +   +   A   R  ++ D    
Sbjct: 819 AWPLPLDADALARRRAARDTVLAHLERMAVQGDEPEP 855



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 81/770 (10%), Positives = 183/770 (23%), Gaps = 52/770 (6%)

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
            IP     ++ + + P  A ++   +         ++    T                 A+
Sbjct: 449  IPVEVVGLAGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRAR 508

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP---NIQKC 355
            LL     + +D      ++  + G       S      + +   D  ++ +P     +  
Sbjct: 509  LLVHRAGRADDADADRRLAEAVEGTDPAEVISLADALDTFLVAGDAADDGLPFSAEARVR 568

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
            F+ +A    D  R  A  +   L   L     +  L  + + LA R +  L  F      
Sbjct: 569  FARLARELRDLRRSLADPLMDVLHRILATTGLEVELSASPQALAARRRETLANFLDIAAR 628

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
             A      +L + +      A ++     A+               K L     A+  + 
Sbjct: 629  FASFDGEASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLV 688

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                 +        +         + +            +  +     +          +
Sbjct: 689  TGQFPSGQSRDAWTAQAKVLPHALRGDAATLPALDSFDAKGIKAFKEEMKEHQHTEELRL 748

Query: 536  TYKTNKNSTCGNLSISDW-------TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
             Y T        L    W       T+     L+ +          +    +        
Sbjct: 749  GYVTFTRPRSLLLGSGHWWGPSQKRTRGPSAFLEALYEHCAAGHGEIEAWADEPAEDEEN 808

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
              + E  + +        D + R            +   +       +     D +    
Sbjct: 809  PALAERDADLAWPLPLDADALARRRAARDTVLAHLERMAVQGDEPEPAYGPGPDDVPAHE 868

Query: 649  LNEGVWP---KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
              +   P       ++     +          +                 H         
Sbjct: 869  PWDEEPPLDEPPADEDWDWDALPTERPAEPVPDMAPEPVRERAPAPEAAPHTEPAPDPAS 928

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDN------LKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
               P I +    +                    +  +    W R LD    +   +R + 
Sbjct: 929  EPTPHIPAARHPQEDPAARHAPETTDPADRLTPEEARTLASWDRDLDSLAGE--LRRARA 986

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                   P   S +++ +L  DP A  A+ + +    P          RGT FH  +   
Sbjct: 987  TVREVVIPAALSATQLLRLAEDPDAF-AQELARPMPRPPQ----PAARRGTRFHAWVESR 1041

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
             ++                 D+    E     +                  E    +   
Sbjct: 1042 YEELPLPMLGPDELPGGDESDAEIADERDLAELKE--------------AFERTAYARRT 1087

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
               V  P ++ +      + G  D +        +I D+KT  +   +        QL++
Sbjct: 1088 PYRVETPFQITLAGR--VIRGRIDAVYRTGD-TYEIVDWKTTRHRTADP------LQLAV 1138

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
               A        +D        ++ ++    +       +      L ++
Sbjct: 1139 YRLAWAELHDLPLDAVT---ATFLYVRTGETVHPQGLPGRADLERILLDE 1185


>gi|251789628|ref|YP_003004349.1| exodeoxyribonuclease V subunit gamma [Dickeya zeae Ech1591]
 gi|247538249|gb|ACT06870.1| exodeoxyribonuclease V, gamma subunit [Dickeya zeae Ech1591]
          Length = 1162

 Score = 98.8 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 90/921 (9%), Positives = 223/921 (24%), Gaps = 96/921 (10%)

Query: 44  LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           L +  I V +    Q L+        +    +     +       + A   +  +   P 
Sbjct: 37  LENELILVQSNGIGQWLKLALARDPREGGCGVAAALDIQLPSRFFWQAYRAVLGHDQVPE 96

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           ++      L   +L     L    +       L           LA+ LAD+ D  +   
Sbjct: 97  TSPFDKSLLVWRLLRLLPDLLTQPEFAALARFLHQDTDLRKHYQLAERLADLFDQYQVYR 156

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKY----WTERLVELNASSPVGYQIALMRAEA 219
             W        +          + L    ++    W   L ++  +     + AL +   
Sbjct: 157 ADWLADWTAGRDLLTSH-RRGVEPLPEEQRWQPLLWRALLEDIGEALSGTSRAALHQRFL 215

Query: 220 EHLMK--------GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI- 270
           + L +        G    +++ G +        L++ +       + +     H    I 
Sbjct: 216 DELKRRGDSERPAGLPSRVVVFGISSLSQQALELLAAIGRWTQVFMCVHNPCRHYWGDII 275

Query: 271 -------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                       ++               Q++   L  +    R+ +  L          
Sbjct: 276 ADKDLLRAERARQRRKPGMPDVLALEELHQHAHPLLAAWGKQGRDYIGLLDEYDQHEQYE 335

Query: 324 SMVISKSFLPPDTSD-----------------MRNTDILENKIPNIQKCFSDVALIEADN 366
           ++V          +                      +          +    +    A +
Sbjct: 336 ALVQPLILRTDMFNGNDNDSLLHQLQDDILELRPLAESSARWPAVDPQRDRSIRFHLAHS 395

Query: 367 EREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL-------TRFGINIDI 415
            + E   +   L  +         +   ++  D N        +           I   +
Sbjct: 396 PQREVEVLHDQLLAAFAADPTLRPRDVIVMVPDINGYAPHIQAVFGLVDRQDPRYIPFSV 455

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF--PEKYLSRAKNALEL 473
           +        L  + L  LL+          +  L++ P  +  F   +++L   +  +  
Sbjct: 456 ADRGSRQNNLLLAALEKLLHLPQSRVAVSDVLDLLEVPAVRRRFAIDDEHLPLLQRWIRA 515

Query: 474 VALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
             +R   ++     L        +     +        V    +    E  +    L   
Sbjct: 516 ANVRWGLHARQRQSLDLPDAPEQNSWFFGLRRMLLGYAVGAGSAWRDIEPLDEVGGLDAV 575

Query: 527 ILQCITPLVTYKT-NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
           +   +  L+     +    C   + S W +     L      +  +       +    L 
Sbjct: 576 LAGQLALLLDRLDSSWQQLCQPATPSQWGERLRALLSTFFAADEGEDG-FMLLQLDDGLQ 634

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
           S                    +    L +  ++      + T+     +  R + F  + 
Sbjct: 635 SWLEACESVALDQALPLSVVREHWLGLFEQSSLTQPF-FAGTVIFATLMPMRAIPFRHVC 693

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR- 704
           L G+N+G +P++     F           ++  +          + +       +   R 
Sbjct: 694 LLGMNDGDYPRSRVPLDFDLMGQDYRPGDRSRREDDRYL-FLEALLSAREQFYISWVGRS 752

Query: 705 -ENNIPTIASRWLQRLLVLG---------------------GTDFFDNLKKRGQCYLDWT 742
             +N     S  + +L                            F  +          + 
Sbjct: 753 IHDNSERPPSVLVAQLRDHLSNGWRAVDGQDVLPALTVEHRLQPFSADYFTADSPLFSYA 812

Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD-------F 795
           R+             +       Q    +  ++   I DP   + R  L +         
Sbjct: 813 REWRAGLVAQDTPSTEAALSEHQQDGVLTLRQLADFIRDPVRSFFRLRLNVWFELEDPTS 872

Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRI--NKNTPEINHLMKQIIDSHFEKENLPPHID 853
                   D  +   L H +I E              +   +++I      +        
Sbjct: 873 QDQEPFAIDALENWRLQHELIQEQKAALHRQTPREQALAAQLERIARR--GELAPGGFTS 930

Query: 854 IIWRHLFHKISHSFLEHEEKI 874
           ++ + L   ++  F  + ++ 
Sbjct: 931 VLAQELAEPMADLFTRYAQEQ 951


>gi|300781705|ref|ZP_07091559.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC
           33030]
 gi|300533412|gb|EFK54473.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC
           33030]
          Length = 764

 Score = 98.8 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 94/779 (12%), Positives = 217/779 (27%), Gaps = 95/779 (12%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +    +   + P     +     T +A  E++     + G ++  +  + +  
Sbjct: 35  TAVLTRRIAYLLQERGVAPW---EILAITFTNKAAAEMKERVGALIGPQAERM-WVATFH 90

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            V          L       V  +     +            D  + L       + +  
Sbjct: 91  SVCVRILRQQAQL-------VPGLNTNFTIYD---------GDDSRRLLGMIAKEMNLDL 134

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                 A+ LA+ I  ++ E    E+  A        + +  A         +  RL E 
Sbjct: 135 KKFS--ARTLANGISNLKNELIGPEEAAANAQTTKNPFEVTVAA----VYTQYQRRLREG 188

Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
           NA         ++    +H       +     +++     +  A   L+ T+  +   A 
Sbjct: 189 NAVDFDDLIGEVVGLFKQHPQVVEYYRRRFRHVLVDEYQDTNHAQYELIHTLVGNGPDAP 248

Query: 258 VLPG-LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            L    D       +   T ++            +P  +   L       +  +     V
Sbjct: 249 ELAVVGDSDQSIYAFRGATIRNIEEFE-----RDYPNATTILLEQNYRSTQNILAAANAV 303

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
             +  GR                        K+         +    ADNE +EA  ++ 
Sbjct: 304 IAQNAGRRPK---------------------KLWTDTGTGEKIVGYVADNEHDEARFVST 342

Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +    D        A++    N +R ++    R G+   +  G           + + L
Sbjct: 343 EIDELTDRGVQYGDIAVMYRTNNSSRALEDIFIRAGVPYKVVGGTRFYERREIRDIVAYL 402

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
             +   +D +++  ++  P    G   + +         ++           ++ +L   
Sbjct: 403 RILDNPDDSVSMRRIINVPKRAIGDKAQAMVALHADNHGMSFGRALIDGAAGEIPTLGPR 462

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                     +         E +     + D        L    T      G  +  + +
Sbjct: 463 AKNAIGGFVEMIQGLRDELPELRNEVTGMPD--------LGALVTRILDVTGYKAELEAS 514

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                  +   L+E   +   +  E    ++       E+G     +   +++ ++ + D
Sbjct: 515 NDPQDGARLDNLNELVSVAREFSSEAANQMAYGEEWDPESGEAQPGSLQAFLERVSLVAD 574

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
            + +    E    + ++    ++ L F  + + G  +G +P   A         +  L  
Sbjct: 575 ADQI--PDEGQGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRAMGDPAELAEERRLAY 632

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
               +   +       A        TRS   + +   ASR+L  +               
Sbjct: 633 VGITR--ARERLYLTRA-------LTRSSWGSPMNNPASRFLAEVP-------------- 669

Query: 735 GQCYLDWTR-KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
            +  LDW R + +Y+     +  P P      +      ++   L       +A+  L 
Sbjct: 670 -EDLLDWRRVEPEYSFSNEAWGSPAPSRRAMPRRERTPVNKDLHLAKGDRVNHAKYGLG 727


>gi|262199184|ref|YP_003270393.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
 gi|262082531|gb|ACY18500.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
          Length = 787

 Score = 98.8 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 83/741 (11%), Positives = 196/741 (26%), Gaps = 116/741 (15%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             LV    +     +    +     T +A +E+R    E+ G  +  +  I +      +
Sbjct: 34  RVLVNRIAHMVDRGVPPRDILAVTFTNKAAKEMRERLRELLGMAANAM-WIGTFHATCVK 92

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                             + R   +       R     I +    +              
Sbjct: 93  LLRIHGEHI--------GLSRDFTIFDSDDQKRLLNALIKEHGLEDQVS----------- 133

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            AK LA  ID  ++ ++                     D L+     +   + +  A   
Sbjct: 134 -AKTLAVQIDRCKSRDEDP----------MDRHGGWGDDLLREIYPLYQAGMAQQGAVDF 182

Query: 208 VGYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
               + ++    +  +          +++     +     RL+   A+      V+   D
Sbjct: 183 NDLLLKVLELARDPTVGPVLSARFDHVLVDEFQDTNRVQFRLVRHFADVSRNLTVV--GD 240

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                  W     ++            +P   + KL                        
Sbjct: 241 DDQSIYSWRGAEPRNLLEFK-----RDYPDAEVVKL---------------------EQN 274

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---M 380
               S      +    +N +  E  +         +      ++REEA  IA A+R    
Sbjct: 275 YRSTSVILDAANAVIAKNRNRHEKALWTASDGGESILWEPCPSDREEATFIARAIRGLVS 334

Query: 381 SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
           + + +    A++   R  +R+++ +L RF I+ +I   +          + S L  + + 
Sbjct: 335 AENRDFSDMAILYRTRAQSRQLEEQLRRFDIHYEIIGDVSFFQRREVKDIISYLRLLVQP 394

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
           N  +A   +V  P                                  +    ++R+    
Sbjct: 395 NADLAFERIVNVP-------------------------------ARGIGKTTVERVRDYA 423

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
               +P +++  +  D     L      +    L      ++      S+++    TV  
Sbjct: 424 RRAELPLFEAARACADGSGGSLAARARNKLRAFLDIVDGLRDVMAAGASVAEIVIQTVER 483

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                              +  +    +    +      A+ +E+  +    +     K 
Sbjct: 484 SGYSAALTKEGTLEAEERLKNLSELVSWGSSFDEEEGEDASLVEF--LANVALQSSGDKA 541

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
           +      + ++    ++ L F  + L GL EG++P    ++           +    +  
Sbjct: 542 ESGDRGKVKMMTIHAAKGLEFPVVFLCGLEEGLFPSLRERD-----------DQNDGDTL 590

Query: 681 IGQAAHDFEMANGTRH-LIYTRSLRE----NNIPTIASRWLQRLL-VLGGTDFFDNLKKR 734
             +    +      R  L+ T +++            SR+L  +                
Sbjct: 591 EEEYRLAYVAITRARERLVLTYAMQRMIWGETRSQRPSRFLDSIPDDCLAVRAEPPPPAT 650

Query: 735 GQCYLDWTRKLDYTTKQPHYK 755
              Y D+   L    +    +
Sbjct: 651 TTHYDDYGSTLRRRRRPAADE 671


>gi|238918748|ref|YP_002932262.1| exonuclease V subunit gamma [Edwardsiella ictaluri 93-146]
 gi|238868316|gb|ACR68027.1| exodeoxyribonuclease V, gamma subunit, putative [Edwardsiella
           ictaluri 93-146]
          Length = 1128

 Score = 98.8 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 80/748 (10%), Positives = 182/748 (24%), Gaps = 75/748 (10%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A   I V +    Q L+ E     G  + I      L           +L        
Sbjct: 29  PFAREVILVQSPGMSQWLQMELARSFGIAANID---FPLPATFIWDLFTRVLPDIPQRSA 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S      +L  L+  + ++             LS          LA  +AD+ D     
Sbjct: 86  FSKDAMTWKLMWLLPQFLDRPAFAPLA----HYLSDDTDRRKHFQLAARIADLYDQYLVY 141

Query: 163 EKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
             +W +        +           L +A + +TE+L +             ++A    
Sbjct: 142 RPEWLQRWEQGGLIEGLDSAQQWQAPLWVALRDYTEQLGQPQW-HRANLYQRFIQALKVS 200

Query: 222 LMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     + I G +   P     +  +  H +  ++      +    I +       
Sbjct: 201 DSAPPGLPRRVFICGISALPPVYLEALRALGEHIDVHLMFTNPCRYYWGDIQDYAFLARL 260

Query: 280 NITSSNTTY-------------------------STHPQYSLAKLLDFLDIKREDVKRLG 314
                                                 Q     LL        D   L 
Sbjct: 261 QSRRRRDYLLAQRSLGDNQSALFRVPEQAAALFSEEGEQALSNPLLASWGKLGRDHMYLL 320

Query: 315 NVSNEMYGR--------------SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                                     + +       +    T     +   +      ++
Sbjct: 321 AQHGPQEVSAFVDLAQDTLLQRIQRDMLELEDHACIAAAAQTLQESRQKRRLASDDRSIS 380

Query: 361 LIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGI 411
           +    + + E   +  +L      +     +   ++ AD +        +         +
Sbjct: 381 VHVCHSPQREVEVLHDSLLDMFSADATLSARDVIVMVADIDSYAPFIQAVFGNTPAARYL 440

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKN 469
              IS             L +LL+      +   +  L++ P    +F   +  +   ++
Sbjct: 441 PFAISDRSARQLHPVVQALLALLDLPHSRFNAEQVLALLEVPALAARFDIDDDGIRLLRH 500

Query: 470 ALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKEL-AV 521
            +E   +R   +   + DL        +                H          +  + 
Sbjct: 501 WVEESGIRWGLDDDAVRDLALPATGQHTWQFGLTRMLLGYAMDSHSGEWQGVLPYDESSG 560

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            + +   Q    L   +  +       +++ W  L    L +                  
Sbjct: 561 TIAELAGQLAQFLAALREWRQRLGQMQTLAQWQPLCWALLDDF--FVTDADSEAVCALIE 618

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
           +    L  + + +            D +T  +D + +  +      +     +  R + F
Sbjct: 619 QQWLKLVEEGLASAYPETLPITVLRDELTARLDNQRISQRFLAGP-INFCTLMPMRSIPF 677

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
             + L G+N+GV+P+  A   F     ++    ++             + +  + L  + 
Sbjct: 678 KVVCLLGMNDGVYPRTLAPLGFDLMAGKAQRGDRSRRDDDRYL-FLEALLSAQQRLYISY 736

Query: 702 SLRE--NNIPTIASRWLQRLLVLGGTDF 727
             R   +N     S  +  LL       
Sbjct: 737 IGRSVQDNSARYPSVLVSELLEYIAQSH 764


>gi|145300877|ref|YP_001143718.1| exodeoxyribonuclease V, gamma subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853649|gb|ABO91970.1| exodeoxyribonuclease V, gamma subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 1134

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 102/885 (11%), Positives = 224/885 (25%), Gaps = 80/885 (9%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            LL   LV + R  PL         + V +    Q L+ E  +  G  + I         
Sbjct: 11  DLLKELLVNHIRQAPLA-HPFEQEQVLVQSPGMAQWLKLELAKAFGIAANI--EFPLPAS 67

Query: 84  VVEEKFTADLLLSYNLNP----PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            + E FT  L      +P     +S     +  A L       L   +     + P   P
Sbjct: 68  FIWEMFTRVLADVPRQSPYNKGAMSWQLMTILPALLDRPAFAPLAAYLGGGDEQDPAGDP 127

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF--LKIASKYWTE 197
                   L + +AD+ D        W           G      A         + W E
Sbjct: 128 EQVR-LWQLCQKVADLFDQYLVYRPDWIARWEEGEGLVGTESQDLAGVSGQDWQPELWRE 186

Query: 198 RLVELNASSP-VGYQIALMRAEAEHLMKGT------KGPIIIAGSTGSIPATARLMSTVA 250
            +    A SP   ++  L       L +           + + G +   P     +  + 
Sbjct: 187 LVARTLALSPSGYHRANLYEEFIHELQRTRDLPGKLPQRVFVFGISALPPRYVEALLALG 246

Query: 251 NHP--NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
           + P     + +     +    + +  T           T     Q     LL  +     
Sbjct: 247 SRPEVEVHLFVTNPCRYYWGDLLDRKTLARLENKLKPGTDLDTLQGPANPLLASMGKLGR 306

Query: 309 DVKRLG-----------------NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
           D                      + S  +     +           + +           
Sbjct: 307 DYLHQLMELEVSQIEAFVDIDEVDASGNVRLLRAIQKDVLELGSRGEGQFDLDSSYHKSP 366

Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL- 406
           I      + +        E   +   L    + +     K   ++  D N        + 
Sbjct: 367 IDPADGSLQIHACHGPMRELEVLHDRLLALFERDPSLTPKDVVVMMPDVNSYGPYIQAVF 426

Query: 407 -TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKY 463
             R  I   +S       +       +LL+          +  +++ P  L +F   +  
Sbjct: 427 GARGQIPFAVSDRAASQESPLLQSFLALLHLPSARLGAGELLAILEVPAVLRRFELDDDE 486

Query: 464 LSRAKNALELVALRGNKN--------------SYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
            ++ +  ++   +R   +              +  +  L+ ++L              + 
Sbjct: 487 FNQLRVWVQETGIRWGLDDAYPERFELPRMSGNSWLFGLRRMLLGFAMGDGEPVAGMSFC 546

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKN----------STCGNLSISDWTKLTVT 559
           +      +     ++ +        +                       S+ +W+   + 
Sbjct: 547 ADHGAGQQGAVASILPYAEIEGQQGLALGKLAWFVDSLAEFLPRLQREQSLPEWSACLLD 606

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
            L    L +  +   L  +     L+   +++ E        A    D + +++ GE+  
Sbjct: 607 LLDRFYLADEEEERLL--QLIRSQLADWQTQLGEARFDQPITADLLQDYLGKVL-GESRS 663

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
            +   +  +     +  R + F  + L G+N+GV+P+  A   F   +M          +
Sbjct: 664 SQRFLAGQVNFCTLMPMRSIPFKQVCLLGMNDGVYPRTLAPMGF--DLMAVASRRGDRSR 721

Query: 680 YIGQAAHDFEMANGTRH-LIYTRSL--RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                    E     +  L  +      ++N   + S  L  L+      F     +R  
Sbjct: 722 RDDDRYLFLEALLSAQQGLYISYQGFSAQDNSDKVPSVLLAELIDYVRQGFVLAGDERLD 781

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY-SFSEIKQLINDPYAVYARRILKLDF 795
                 R L +   +                    +++       +P    A        
Sbjct: 782 DEASGERLLKHLVVEHPLTPYSRSYFYPEAESRLFTYAADWLPALNPVRGAANFQSGELP 841

Query: 796 IPHFKKDPDRTDRGTLF---HNIITELIKKRINKNTPEINHLMKQ 837
           +P         +   L           + +R+          ++ 
Sbjct: 842 LPPEWGREQGLELAELLRFYRQPAKYFLNRRLKVWFELNEANIED 886


>gi|38233432|ref|NP_939199.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199692|emb|CAE49351.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae]
          Length = 805

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 87/724 (12%), Positives = 193/724 (26%), Gaps = 86/724 (11%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +    R   + P    ++     T +A  E+R     + G  +  +  + +    
Sbjct: 55  VLTRRIAYLMRVRGVQPQ---NILAITFTNKAAAEMRERVSSLVGPVAQRM-WVSTFHST 110

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                     L       V  +     +       +  L  I KD   +     P     
Sbjct: 111 CVRILREQAQL-------VPGLNTNFTIYDSDDS-KRLLSMISKDFSLDIKKFTPRL--- 159

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                  LA  I  ++ E    +   A        +    A         + +RL   NA
Sbjct: 160 -------LATGISNLKNELIDADQACADAESTKNPYETTIAS----VFAEYQKRLRASNA 208

Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMST-VANHPNGAIV 258
                     +R   EH       +     ++I     +  A   L+   V + P+ + +
Sbjct: 209 VDFDDLIGETVRIFREHPPVTEYYRRRFRHVLIDEYQDTNHAQYALIHELVGSGPDASEL 268

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               D       +   T ++            +P      L       +  +    +V  
Sbjct: 269 CVVGDSDQSIYAFRGATIRNIEEFE-----RDYPNAETILLEQNYRSTQTILNAANSVIA 323

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
           +   R                      E K+         +    ADNE +EA  IA  +
Sbjct: 324 QNENRR---------------------EKKLWTALGSGDPIVGYVADNEHDEARFIANEV 362

Query: 379 RMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
               D+       A++    N +R V+    R GI   +  G           + + L  
Sbjct: 363 DALADKGVAYSDIAVMYRTNNSSRAVEDVFMRTGIPYKVVGGTRFYERKEIRDIIAYLRL 422

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD---LKSLVL 493
           I   +D +++  ++  P    G               V                L +   
Sbjct: 423 IDNPDDAVSLRRIINTPRRGIGDKAVAFLSLHADNHNVGFHKALLDATEDKVSMLGARGR 482

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
           + +    +       ++     +      + D +   +   VT    +     +      
Sbjct: 483 NAVTGFVDMMKGIREEAANKVNEVTGMPDIGDMVSYILD--VTGYKAELEKSNDPQDGAR 540

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                  +             + +E  G    +     +  G     + + +++ ++ + 
Sbjct: 541 LDNLNELVSVAREFSSEAANQVAYERMGAENQAPEIPELSEGEAAPGSLMAFLERVSLVA 600

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
           D + +     +   + ++    ++ L F  + L G  +G +P   A              
Sbjct: 601 DADQI--PDNEQGVVTLMTLHTAKGLEFPVVFLTGWEDGQFPHLRA-------------- 644

Query: 674 LKTAEKYIGQAAHDFEMANGTRH-LIYTRSL----RENNIPTIASRWLQRLLVLGGTDFF 728
           L   ++   +    +      R  L  +R++      N +    SR+L  +         
Sbjct: 645 LGEPKELAEERRLAYVGITRARRTLYLSRAMLRSSWGNPVTNPPSRFLSEIPDELMDWRR 704

Query: 729 DNLK 732
           +  +
Sbjct: 705 EEPE 708


>gi|227488933|ref|ZP_03919249.1| RecB family exonuclease [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091117|gb|EEI26429.1| RecB family exonuclease [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 280

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 90/266 (33%), Gaps = 28/266 (10%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S + Q    P +     I K+       +  D   +GTL H ++  L+     + T
Sbjct: 20   ALSPSRVSQYKKCPLSFRFGAIDKIP-----TETKDYQLKGTLVHAVLEHLMGLPPEERT 74

Query: 829  -PEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
             P    L+    +    +     E +P H ++ +      +   +   E       ++  
Sbjct: 75   YPTAVKLIVPTWEKMKAEDPGNAEVVPEHKEMDFFVQARGLIKGYFMMENPQGLETDR-- 132

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
            +       +    + L GF DR+D+   G V I DYKTG  P    A   +  Q+   A 
Sbjct: 133  MEEFVSTTLRD-DVPLRGFIDRVDVNADGMVRIVDYKTGKKPSPRFADDAMA-QMKFYAL 190

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
             +    +  I  +    L Y+ +     +        + + +E + + ++   EI     
Sbjct: 191  -VWWCLYGVIPAQ--LRLMYLAVGDDLTLSP-----DEATLEEFAAELVQTWDEIKHKGA 242

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028
             GE  F        K     +Y  + 
Sbjct: 243  RGE--FEPRTS---KLCGWCDYQSIC 263


>gi|305681998|ref|ZP_07404802.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium
           matruchotii ATCC 14266]
 gi|305658471|gb|EFM47974.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium
           matruchotii ATCC 14266]
          Length = 898

 Score = 98.5 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 91/728 (12%), Positives = 191/728 (26%), Gaps = 76/728 (10%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +    R   + P     +     T +A  E+R   I++ G  +T +  + +  
Sbjct: 125 TAVLTRRIAYLLRMRGVAP---GQILAITFTNKAAAEMRDRVIDLVGPTATRM-WVATFH 180

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                       L       +  +     +       +  L  I KDL   +    P   
Sbjct: 181 SACVRILREQAHL-------LPGLNTNFTIYDADDS-KRLLGMIAKDLQINAQKFPPRL- 231

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                    LA  I  ++TE    +            +       +      +  RL   
Sbjct: 232 ---------LAAAISALKTELTDPDAASDEAAATRNPF----DRTIAEVYTEYQRRLRAA 278

Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANH-PNGA 256
           NA          +R    H       +     ++I     +  A   L+ST+    P+ +
Sbjct: 279 NALDFDDLIGETVRVFTTHPEIAAYYRKRFRHVLIDEYQDTNHAQYVLISTLVGTGPDAS 338

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            +    D       +   T ++            +PQ     L       +  +     V
Sbjct: 339 ELSVVGDSDQSIYAFRGATIRNIEEFE-----RDYPQARTILLEQNYRSTQNILSAANAV 393

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
            +  +GR                      E K+       + +    ADNE +EA  IA 
Sbjct: 394 ISHNHGRR---------------------EKKLWTDHGAGAKITGYVADNEHDEARFIAT 432

Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +    D        A++    N +R ++    R GI   +  G           L + L
Sbjct: 433 EIDALFDMGVGYGDIAVMYRTNNSSRAIEEVFIRTGIPYKVVGGTRFYERKEIRDLIAYL 492

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
             +    D +++  ++  P    G               ++            + +L   
Sbjct: 493 RVLDNPTDEISLRRIINTPRRGIGDRAIATVNLYAENFGMSFADALVDAAHGKVTALGTR 552

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-----TYKTNKNSTCGNLS 549
                     +       + E       L D  +     L                    
Sbjct: 553 AKNAIAAFLELMDGLRVDAAEATNAITGLPDIGVVVSRILDATGYKAELEASTDPQDGAR 612

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
           + +  +L     +      +           G  +          G     +   +++ +
Sbjct: 613 LDNLNELVSVAREFSSEAANLMAYAAMGAGTGAGVEGNDPAEPMVGEPQPGSIHAFLEKV 672

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
           + + D + +    + ++ + ++    ++ L F  + L G  +G +P   A         +
Sbjct: 673 SLVADSDQL--PDDSTNVVTLMTLHTAKGLEFPVVFLIGWEDGQFPHLRALGDPQELAEE 730

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             L      +          M          R+   N +   ASR+L+ +         +
Sbjct: 731 RRLAYVGITRARETLYLTRAML---------RASWGNAVANPASRFLEDIPEKLMYWRRE 781

Query: 730 NLKKRGQC 737
                G  
Sbjct: 782 EPGAGGWD 789


>gi|226306669|ref|YP_002766629.1| hypothetical protein RER_31820 [Rhodococcus erythropolis PR4]
 gi|226185786|dbj|BAH33890.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 291

 Score = 98.5 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 76/282 (26%), Gaps = 24/282 (8%)

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                                S S        P     R + ++   P          RGT
Sbjct: 2    PTPTPTGATSQERPRSRPALSPSRAGDYKQCPLLYRFRAVDRIPETPTR-----AQVRGT 56

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH--IDIIWRHLFHKISHSFL 868
            + H  +  L         P+    + +        E+      I       F       +
Sbjct: 57   VVHAALEALFALPTGHRVPDRAAELVRPAWERVSAESPEAADLIPEDELDAFLGEVGKLV 116

Query: 869  E--HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
               +  +  +  +     +  +  +E  G+ L GF DRID+  +G V + DYKTG  P +
Sbjct: 117  ATYYTLEDPTRFDAEACEVYVETELE-NGVRLRGFVDRIDVAPTGEVRVVDYKTGKAP-R 174

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
            E  +     Q+   A  L             A L  I L     +    +  +    +  
Sbjct: 175  EFTESKALFQMKFYALVLLR-----TRGIVPAQLRLIYLASGSILTYAPDHDELIRFERT 229

Query: 987  SEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
                 K       +L  G        +  +      ++  L 
Sbjct: 230  LSAIWK------AILAAGATG-DFRPKPGK-LCDWCDHKSLC 263


>gi|302205782|gb|ADL10124.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           C231]
 gi|308276017|gb|ADO25916.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19]
          Length = 846

 Score = 98.5 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 89/735 (12%), Positives = 197/735 (26%), Gaps = 89/735 (12%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +    R   + P     +     T +A  E+R     + G  ++ +  + +  
Sbjct: 92  TAVLTRRIAYLMRIRGVQP---GQILAITFTNKAAAEMRERVAHLVGPIASRM-WVSTFH 147

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                                       E A+L+    +       D        +    
Sbjct: 148 STCVRILR--------------------EQAQLVAGLNSNFTIYDSDDSKRLLAMISKDM 187

Query: 143 -ANAIWLAKNLADI-IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
             +       L    I  ++ E        A        +    A         +  RL 
Sbjct: 188 NLDIKKFTPRLLGAGISNLKNELISPATAVAEAESTKNPYETTVAA----VYVEYQRRLR 243

Query: 201 ELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
           + NA          +R   EH       +     ++I     +  A   L+  +      
Sbjct: 244 QANAVDFDDLIGETVRIFKEHPQVTEYYRRRFRHVLIDEYQDTNHAQYVLIHELVGTGET 303

Query: 256 A-IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
           A  +    D       +   T ++            +P  +   L       +  +    
Sbjct: 304 ASELCVVGDSDQSIYAFRGATIRNIEEFE-----RDYPNATTVLLEQNYRSTQTILNAAN 358

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
           +V ++   R                      + K+         +    ADNE +EA  I
Sbjct: 359 SVISQNENRR---------------------KKKLWTALGSGDPITGYVADNEHDEARFI 397

Query: 375 AIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
           A  +    D+  +    A++    N +R V+    R GI   +  G           + +
Sbjct: 398 AQEIDALADKGIDYSDMAIMYRTNNSSRAVEDVFMRSGIPYKVVGGTRFYERKEIRDVIA 457

Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            L  +    D +++  ++  P    G          +  + V+L+          +  L+
Sbjct: 458 YLRLLDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQGVSLQQALIDASEGQVS-LL 516

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
             R     +         R S  +    +  +  I   I  ++     K     +    D
Sbjct: 517 GARGRNAISGFVNMMSGLRDSAAESVNEITGMPDIGNVIAQILDITGYKAELEKSNDPQD 576

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS-SLFSKIIETGSCIKANAIEWIDIITR 611
             +L    L  +             +     +  S    +   G     +   +++ ++ 
Sbjct: 577 GARL--DNLNELVSVAREFSSEAANQVAYAKMDGSELDDLAAVGEPEPGSLQAFLERVSL 634

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
           + D + +     +   + ++    ++ L F  + L G  +G +P   A            
Sbjct: 635 VADADQI--PDNEQGLVTLMTLHTAKGLEFPVVFLMGWEDGQFPHLRA------------ 680

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL----RENNIPTIASRWLQRLLVLGGTD 726
             L   ++   +    +      R  L  TR++      N +   ASR+L  +       
Sbjct: 681 --LGDPKELAEERRLAYVGITRARKALYITRAMLRSSWGNPVTNPASRFLTEIPQELLDW 738

Query: 727 FFDNLKKRGQCYLDW 741
             +  +     +   
Sbjct: 739 RREEPESSFDAWGQP 753


>gi|139438970|ref|ZP_01772430.1| Hypothetical protein COLAER_01436 [Collinsella aerofaciens ATCC
            25986]
 gi|133775681|gb|EBA39501.1| Hypothetical protein COLAER_01436 [Collinsella aerofaciens ATCC
            25986]
          Length = 1032

 Score = 98.5 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 111/1059 (10%), Positives = 261/1059 (24%), Gaps = 140/1059 (13%)

Query: 56   AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115
            A   L ++ +   G+   + P    L     +   A   L  +   P S ++ L EL   
Sbjct: 17   AEAALLADLVARHGRAVMLAPSFAELDVCRHDAAVAGASLGVDYKTPASWLRSLWELMGD 76

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
               + + +   +  L+ +       +    +  ++    ++  +  +          +  
Sbjct: 77   GRSFVDNMQRQM--LFSDMIARRDDADLQPLSRSQGTVRMLARMARDVLPGVAGTGAERC 134

Query: 176  KYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231
            +           A   +      +   L   +   P      +    A++L       + 
Sbjct: 135  RGDVCQPDPKSDAEARVFELLSSYASGLDRRDMVEPCEAADLMAEVLADNLPA-CARAVC 193

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
            + G T        L+S VAN+    +VL                                
Sbjct: 194  VRGITSFTHGLLELLSAVANNGGEVVVLL------------------------------- 222

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
                 A + + L    +    L   +    G +   + S      + +            
Sbjct: 223  -AREQAAMREELAAAFDARGVLFEAAPLGEGAAAPQTASKSAAQPTFVEVAGPHARAHAY 281

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
            +      V   E       A + A  +R           +      L   +   L    I
Sbjct: 282  VDAIDELVKTCEDAAVDGGATASADPVR--------VLVVSARAPQLFGELAARLAARHI 333

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFK-------------LNDFMAIATLVKHPLAKFG 458
              + +     S ++     T+L N I +                   +   +  PL+   
Sbjct: 334  AAETTEFTAFSQSIAGRQFTALANLIERMKAADEGTASKTEWWPAPELTDWIYSPLSG-- 391

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                  + A+   + + L   K +  +  L   V  ++   +      +W   +     +
Sbjct: 392  ---ADAASARTFDKNMRLSRGKTTTAVKSLLQSVQGQVRGTRKAASDDNWFKNVPCVVSD 448

Query: 519  LAVLLVDH---------ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
            +   L            +              +        +   +  +  L N      
Sbjct: 449  VFQALWRDKPVTALKAMLAVAEALPDRALGGLDGQARRQVETALLRHVIDILMNDARTLD 508

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                      +                  + +      +    +            + LF
Sbjct: 509  VSQAATVPVLDDVRTKVDKRSTAYDYETYEVDRAPRAQVRFASLTDAAALRPDSYDAVLF 568

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA--HD 687
                L+S  L+ +   L  L   +        P     ++    ++ A   +  A   HD
Sbjct: 569  ADVDLDSYPLSHEEGPLATLTAELGRSGVTLEPAALLRVRFGRAMQAARGPVALARVTHD 628

Query: 688  FEMANGTRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
             +        ++T             +A      ++        + ++ +          
Sbjct: 629  RQARECYPAAVWTELRAHAEATGAAKVACVGEGGIVADFDPAAGEGIECKRVACEAPQHL 688

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTY-SFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
             +        +R               S S+I+     P   +    +K           
Sbjct: 689  SEAAVPYLVLRRRDGEGENAPLVPRLTSASQIEAYSTCPLCWFVSYRVK---PQSIDAGF 745

Query: 804  DRTDRGTLFHNIITELIKKRINKN--------TPEINHLMKQIIDSHFEKEN-------- 847
               ++G   H+++  L  +   +          P    L++++ D    +          
Sbjct: 746  GNMEKGNFVHDVLEHLHARLPQEGMERVTPENLPRAQELLREVFDETLAEHAGKRGTEGP 805

Query: 848  --LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-KMAIESIGIHLTGFADR 904
                  ++              L +E +  +     ++     ++ +E  G  L G  DR
Sbjct: 806  LVPLSAVEERQVAEILPQLEGVLAYESEALAPFAPRYLEFAFNELKVEYAGWPLGGRIDR 865

Query: 905  IDLLKSGFVDITDYK--TG------DNPKKETAQKLIDP-----------QLSLEAAALK 945
            +D+       + DYK  TG       +P     +    P           Q  + A A++
Sbjct: 866  VDVDAENRAVVIDYKHRTGVEEFKLADPTVRDEESGTAPIDDPRWLPPHTQTLIYAQAMR 925

Query: 946  A---------------GSFSQIDCRKVANLFYIRLKQK---FKIDCITNDKKKYSADELS 987
                            G    +     A L                   +      D L 
Sbjct: 926  RALDLDTRAALYFSTKGGKPALRGAASAELLEEERGDGRIPGLKKGFPGEGGSMDFDALL 985

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026
            ++    + E +  L+ G          ++ ++ +  Y+H
Sbjct: 986  DRVEAGIAERLRELEAGNVA-AVDPTSAQAAHARCSYNH 1023


>gi|294012133|ref|YP_003545593.1| DNA helicase II [Sphingobium japonicum UT26S]
 gi|292675463|dbj|BAI96981.1| DNA helicase II [Sphingobium japonicum UT26S]
          Length = 758

 Score = 98.5 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 87/730 (11%), Positives = 183/730 (25%), Gaps = 118/730 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+R     + G     +P + +   +  +                 
Sbjct: 62  SEILAVTFTNKAAREMRERVGRMIGPAVEGMPWLGTFHAIAAKM---------------- 105

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    L  +  L          W A+ LA +ID  + +  
Sbjct: 106 -LRRHAELVGLQSNFTILDTDDQLRLMKQ--LIQAEGIDEKRWPARQLAGLIDQWKNKGL 162

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             E++      +   +       L      +  RL ++NA       + ++     H   
Sbjct: 163 TPEEI---GAGESEGYANGRGQKL---YAAYQARLRDVNACDFGDLLLHVLTILKRHRDV 216

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +  +    +  +A        +   D       W      + 
Sbjct: 217 LESYQQRFRYIMVDEYQDTNSSQYLWLRLLAQSSKNICCV--GDDDQSIYSWRGAEVANI 274

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
               ++      P   + +L          +     V  E   R                
Sbjct: 275 LRFENDF-----PGAKIIRLEQNYRSTPHILGAASGVIAENGNR---------------- 313

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397
                L   +         V +I   +  EEA  +   +       +   + A++   ++
Sbjct: 314 -----LGKTLWTDIDVGEKVRVIGVWDGPEEARRVGEEIESIERGGRSLDEVAILVRAQH 368

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             R  +    + G+   I  G             + L  + +  D +A   +V  P    
Sbjct: 369 QTREFEDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQPADDLAFERIVNVPKRGL 428

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G             E V                 +    A   +   +     R      
Sbjct: 429 GDKAVEKLHRLARTEGVP----------------LALAAARILDTDEMTPQARRSLGAFI 472

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                  D   Q     +  +    S    +  ++ T  +   L+N+             
Sbjct: 473 GDLARWRDRAAQLPHAELARQILDESGYTAMLQAERTAESAGRLENLSELARAMEEYETL 532

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
               + +S +     +                                  + I+    ++
Sbjct: 533 GAFLEHVSLVMDNEAQA-----------------------------DERKVTIMTIHAAK 563

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L FDT+ L G  EG++P   A +         +  L + E+    A      A     +
Sbjct: 564 GLEFDTVFLAGWEEGIFPSQRALD---------EGGLNSLEEERRLAYVAITRA-RKSCI 613

Query: 698 IYTRSLRENNIPT---IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
           I   + R         I SR++  L      +             +W+ + D        
Sbjct: 614 ILHAANRRIYGQWTSSIPSRFVGELPPEHVEEESSMSGGASLWRANWSERADPFANVQRG 673

Query: 755 KRPKPFPPLE 764
               P     
Sbjct: 674 TGRGPGWQRA 683


>gi|307131100|ref|YP_003883116.1| exonuclease V (RecBCD complex), subunit gamma [Dickeya dadantii
           3937]
 gi|306528629|gb|ADM98559.1| exonuclease V (RecBCD complex), gamma chain [Dickeya dadantii 3937]
          Length = 1185

 Score = 98.5 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 101/944 (10%), Positives = 230/944 (24%), Gaps = 128/944 (13%)

Query: 44  LASVTIYVPTKRAIQELRSEFIEI--TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
           L +  I V +    Q L+         G       +   L      +    +L  Y+  P
Sbjct: 46  LENELILVQSNGIGQWLKLALARDVCDGGCGVAAALDVELPSRFFWQVYRSVL-GYDQVP 104

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             S   + L + RL+ +    L            L           LA+ LAD+ D  + 
Sbjct: 105 ETSPFDKSLLVWRLVRLLPELLAQPEFAALARF-LQQDADLRKRYQLAERLADLFDQYQV 163

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKY----WTERLVELNASSPVGYQIALMRA 217
               W        +          + L    ++    W   L ++  +     + AL R 
Sbjct: 164 YRADWLADWTAGRDVLATS-RRGVEALPDDQRWQPLLWRALLADIGEALSGTSRAALHRR 222

Query: 218 EAEH--------LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +            G    +++ G +        L++ +       + +     H    
Sbjct: 223 FLDEVKRRGDGDRPAGLPSRVMVFGISSLPQQALELLAAIGRWTQVFMCVHNPCEHYWGN 282

Query: 270 I--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
           I             ++               Q++   L  +    R+ +  L        
Sbjct: 283 IIADKDLLRAERARQQRKPGMPEAVALEELHQHAHPLLAAWGKQGRDYIGLLDEYDQREQ 342

Query: 322 GRSMVISKSFL----------------PPDTSDMRNTDILENKIPNIQK-CFSDVALIEA 364
             S++                        D  D+R       + P I       +    A
Sbjct: 343 YESLLQPLISRIDLFDSNGESCLLNQLQDDIRDLRPLAESRARWPAIDPHQDRSIRFHVA 402

Query: 365 DNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL--------TRFGIN 412
            + + E   +   L  +         +   ++  D N        +            I 
Sbjct: 403 HSAQREVEVLHDQLLAAFAADPTLRPRDVIVMVPDINGYAPHIQAVFGLIDRQKDPRYIP 462

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF------------- 459
             ++   P    L  + L  LL           +  L++ P  +  F             
Sbjct: 463 FSVADRGPRQNNLLLAALERLLTLPQSRVAVSDVLDLLEVPAVRQRFSIAEEQLPLLQRW 522

Query: 460 ----PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                 ++   A+    L      + +     L+ ++L       +          +   
Sbjct: 523 IRAANVRWGLHARQRQSLDLPDAPEQNSWFFGLRRMLLGYAVGTGDAWRDIEPLDEIGGL 582

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
           D  LA  L       +  L                 +  +  ++        E   +   
Sbjct: 583 DAVLAGQLA----LLLDRLDYSWQQLCQPATPAQWGERLRALLSTFFTADEGEDGFMLLQ 638

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             E     L +  S  +E    +      W+ +  +    +        +  +     + 
Sbjct: 639 LDEGLQNWLEACESVTLEQALPLSVVREHWLGLFEQSSLTQPFF-----AGAVTFATLMP 693

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
            R + F  + L G+N+G +P+N     F           ++  +          + +   
Sbjct: 694 MRAIPFRHVCLLGMNDGDYPRNRVPLDFDLMGQDYRPGDRSRREDDRYL-FLEALLSARE 752

Query: 696 HLIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFF---------------------DNLK 732
            L  +   R   +N     S  + +L       +                       +  
Sbjct: 753 RLYISWVGRSIHDNSERPPSVLVAQLRDHLSNGWQTVDGQDVLSALTVEHRLQPFSPDYF 812

Query: 733 KRGQCYLDWTRKLDYTTKQPH-------------YKRPKPFPPLEAQPRTYSFSEIKQLI 779
             G     + R+                          +       Q    +  ++   +
Sbjct: 813 TAGSPLFSYAREWRAGLLPQDDGLLPQDRLLPQNAPATETALDEYRQDGVLTLRQLADFV 872

Query: 780 NDPYAVYARRILKLD-------FIPHFKKDPDRTDRGTLFHNI--ITELIKKRINKNTPE 830
            DP   + R  L +                 D  +   L H +  + +   ++       
Sbjct: 873 RDPVRSFFRLRLNVWFEQADATSQDQEPFAIDALENWRLQHELIQVQQAALRQRIPREQA 932

Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
           +   + +I      +        ++ + L   ++  F  +E++ 
Sbjct: 933 LAEQLARIARR--GELAPGGFTAVLEQDLAEPMADLFTRYEQER 974


>gi|258651495|ref|YP_003200651.1| ATP-dependent DNA helicase PcrA [Nakamurella multipartita DSM
           44233]
 gi|258554720|gb|ACV77662.1| ATP-dependent DNA helicase PcrA [Nakamurella multipartita DSM
           44233]
          Length = 864

 Score = 98.5 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 74/724 (10%), Positives = 187/724 (25%), Gaps = 58/724 (8%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +          P     +     T +A +E++    ++ G +   +  + +   +
Sbjct: 67  VLTRRIAYLLAVGGAQP---GEILAITFTNKAAREMKDRVTDLVGGRGRSM-WVSTFHSM 122

Query: 85  VEEKFTADLL-LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                 A+   +       + +      LA+L+    N                      
Sbjct: 123 CVRILRAEATQIGLKTTFTIYDQADSQRLAQLVAGGLNIDTKKYP--------------- 167

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                A+ LA  I  ++ E    E      +             +    + + ERL   +
Sbjct: 168 -----ARMLAASISNLKNELIDPETALERADSDQA-------TLVAKVYQGYQERLRAAS 215

Query: 204 ASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
           A       +  +     H       +     +++     +  A   L+  +         
Sbjct: 216 ALDFDDLIMQTVFLLQRHPAVAEHYRRRFRHVLVDEYQDTNHAQYLLVKALVGGTADEQE 275

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
           +   D      +      +           +    Y+         ++ E        + 
Sbjct: 276 VRTAD----GELVRAAASEVPPAELVVVGDADQSIYAFRGATIRNIVEFERDYPN-AQTI 330

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA--- 375
            +              ++   RN       +   Q   + +     DNE +EA  +    
Sbjct: 331 MLEQNYRSTQTILSAANSVIARNPQRRAKNLWTAQGGGTRITGYVGDNEHDEAQFVGKEI 390

Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
            AL  + +      A+     + +R ++    R G+   I  G+            + L 
Sbjct: 391 DALVDAGEAVFGDVAVFYRTNSASRSLEDVFIRNGMPYRIVGGVRFYERKEVKDALAYLR 450

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL-RGNKNSYDIMDLKSLVLD 494
           A+   +D + +  ++  P    G   +         E +      + + +I  L +   +
Sbjct: 451 AVANPDDEINLRRILNTPRRGIGDRAEACVSVFAERERIGFGEALQRTGEIPGLAARSAN 510

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDW 553
            +++          +     E  +L   +++               + +       +   
Sbjct: 511 SLSSFAELLAGLRSEVGFGMEPADLLTAVLERTGYRAELENSEDPQDGSRLENLDQLVSV 570

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            + T   L          L      E G    +           +  +A + +  +   +
Sbjct: 571 LRETTETLLAGGGLAALGLAADAGPEPGDGADAPAEPGPSADEDVPPDAGDLLLAVLEQL 630

Query: 614 D--GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
               +           + ++    ++ L F  + + G  +G++P   A         +  
Sbjct: 631 SLVADADSVPDSAEGMVTLMTLHTAKGLEFPVVFVTGWEDGIFPHQRALGDDSELAEERR 690

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
           L      + + +      M          RS         ASR+L  +          + 
Sbjct: 691 LAYVGITRAMKRLYVTRAMM---------RSAWGQPAANPASRFLDDIPAELIEWRRTDA 741

Query: 732 KKRG 735
             R 
Sbjct: 742 DARA 745


>gi|297571477|ref|YP_003697251.1| hypothetical protein Arch_0907 [Arcanobacterium haemolyticum DSM
            20595]
 gi|296931824|gb|ADH92632.1| conserved hypothetical protein [Arcanobacterium haemolyticum DSM
            20595]
          Length = 283

 Score = 98.5 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 83/246 (33%), Gaps = 23/246 (9%)

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            +       S S +    + P     R I +L   P  +       RGT+ H+++  L   
Sbjct: 1    MATIHAALSPSRVSDFRSCPLKFRFRVIDRLTEPPSLE-----ALRGTIVHSVLERLYDV 55

Query: 823  RINKNTPEINHL-MKQIIDSHFEKENLPPHIDII------WRHLFHKISHSFLEHEEKIQ 875
              ++    +    ++ I + H EK      +         W      +  S+   E    
Sbjct: 56   PASERGEALAQESLENIWEQHAEKSPADAELFTDSESFTTWLESARPLISSYFTLEN--P 113

Query: 876  SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935
              +E           + S G+ + G  DR+D   +G + I DYKTG +P     Q     
Sbjct: 114  QYLEPHGRERFVNATLPS-GLAIRGIIDRLDKAPNGALRIVDYKTGKSPAPRF-QDGAIF 171

Query: 936  QLSLEAAALKAGSFSQIDCRKV-ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            Q+   A AL    F +     +   L Y++ K+    D +  D +  + +         +
Sbjct: 172  QMRFYATAL----FYEEGTLPLRTQLLYLKDKRVLTYDPVPADVEATTNE--LNHVWSAI 225

Query: 995  IEIVTL 1000
               +  
Sbjct: 226  RGRIDD 231


>gi|307718485|ref|YP_003874017.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM
           6192]
 gi|306532210|gb|ADN01744.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM
           6192]
          Length = 665

 Score = 98.5 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 83/720 (11%), Positives = 182/720 (25%), Gaps = 136/720 (18%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVS 104
           +     T +A +E+      +TGKK T L  + +      +     + L           
Sbjct: 55  ILALTFTNKAAREMWERVRTLTGKKLTNL-TVGTFHSFGAQILREHIHLLGYRPTFSIYD 113

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
              +   + + I                       +     +     +  +I  I+T   
Sbjct: 114 TQDQKALIKQCIQE---------------------VGLNPDLANISAIRTLISAIKT--- 149

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                           W    +  +   + +   L   +A       +  +     H   
Sbjct: 150 ------------GRAGWNAENEVYRPVYEEYHAHLRAYHAVDFDDLIVLPIGLFETHPEV 197

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I+I     +     R +  +A       V+   D       W     ++ 
Sbjct: 198 LASYRERFRYILIDEFQDTSILQYRFIKLLAEEHRNLCVV--GDDDQSIYSWRGANYENF 255

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +   +                                 ++      +       +    
Sbjct: 256 ALFERDFPER--------------------------KEVKLEQNYRSVQTILEAANQLIS 289

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396
            NT+  E ++ + +   + + L    NEREEA  IA  +R  + +      +  ++    
Sbjct: 290 HNTNRKEKRLWSGRPGKTSIYLTFPSNEREEAEYIAETIRTVVLKEGIPYHEIGVLVRTN 349

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
           +L   ++    R  I   +S G           + + L  I   +D +++  ++  P   
Sbjct: 350 SLMAPIEDAFLRHNIPYKLSGGTSFFERKEIKDIIAYLRVILNPDDDVSLLRIINTPRRG 409

Query: 457 FGFPEKYLS-RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
            G    ++        EL       +      L   V        +       +      
Sbjct: 410 IGRQTLHILGEYATEHELSIYSALTSLLYAQGLPPQVARTFDEFVSLIEEFGERITGRTS 469

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKN----STCGNLSISDWTKLTVTCLQNVCLDEHRK 571
             E    LVD I      +  ++ N+          +  SD  +       N+       
Sbjct: 470 IAETVRDLVDRIDYFEYLMQEHRDNEKVARYRYQNLMLFSDLIERWENDPDNL------- 522

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                                        N      +    +  +    + +    + ++
Sbjct: 523 -----------------------------NPNLGAYLTRISLITKDELDEEDTKGKVNLM 553

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + L G+ EG+ P   A              L+ +E  I +    F +A
Sbjct: 554 TIHAAKGLEFAHVFLAGVEEGIIPHARA--------------LEDSETNIEEERRLFYVA 599

Query: 692 N-GTRHLIYTRSLR-----ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
               R  +Y  S R       +     S +L+ L                +   D   ++
Sbjct: 600 ITRAREALYLTSCRQRRVMREDQEQTPSPFLEELPDHLIETEAPPSDLTEEDVEDIFARM 659


>gi|255262268|ref|ZP_05341610.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62]
 gi|255104603|gb|EET47277.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62]
          Length = 1119

 Score = 98.5 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 85/899 (9%), Positives = 219/899 (24%), Gaps = 136/899 (15%)

Query: 123  LPDIIKDLYPESPLSLPISPANAI-WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            L    +      P +       A   L   L   +D +    +  + + + +        
Sbjct: 276  LYSDGRSKVGNWPQANHKGAVEAFEPLRGELDTFLDEVWQVSQIEKAIRSFEMT------ 329

Query: 182  LLAADFLKIASKYWTERLVELNASSP----VGYQIALMRAEAEHLMKGTKG----PIIIA 233
                 F       +  R  +          +  +  L   +    +          I++ 
Sbjct: 330  QALHTFATAFLPMYEARKQQHGWLDFDDLILKAKSLLTNPQVAQWVLFRLDGGIDHILVD 389

Query: 234  GSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
             +  + PA   ++  +A          H     +    D       +      + +    
Sbjct: 390  EAQDTSPAQWSVIENLAQEFTSGEGARHDEPRTLFVVGDKKQSIYSFQGADPNAFDTMRD 449

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKR--------LGNVSNEMYGRSMVISKSFLPPDT 336
                    Q  +      LD      +              +    + +           
Sbjct: 450  MFK-ERLEQIEIGLNTLSLDYSFRSSEPILTLVDQTFSGDRSAGLEKDVFHIAFKNQMPG 508

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREE-AISIAIALRM--SLDENKKKSALIT 393
                   I        +  F  +  +  D+   + A  IA  +    + +    +   + 
Sbjct: 509  RVDLWPAIEPTNTKEDRDWFDPIDQVGQDHHYVQLARGIADEILRMKAHETIPDEVDRVP 568

Query: 394  ----------------ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                             +  L   +     + G+ +  +  + +   L    +T++L+ +
Sbjct: 569  MKRPITEGDILILVQGRNSGLFSEIIAACKQRGLAVAGADRLKVGAELAVRDITAVLSFL 628

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                D +++A  +K P+  +   + Y    K           +           +LD + 
Sbjct: 629  ALPEDDLSLAGALKSPIFGWSEQDLYDLAHKRPKGQYLSATLRERASEFPKTREILDDLD 688

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
             Q +         RL         LL     +    +        +   +   S      
Sbjct: 689  RQADFLRPYDLIERLLTRHDARDRLLGRLGTEAEDGINALLAQALAYERSSIPS-----L 743

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               L+ +   E               +        +    +  +  + ++     +    
Sbjct: 744  TGFLEWMAAGE-------------LEIKRQMDNAGDQIRVMTVHGAKGLEAPIVFLPDTA 790

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
             K  +       +  T+  R  + D                       +V+      +  
Sbjct: 791  KKKPMPLPKLTTLSDTVVWRGASTDV---------------------PQVISDRTERERL 829

Query: 678  EKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
            ++   +    +       + L+   +           + +   +   G      +  +G 
Sbjct: 830  KQEDERQRLLYVAMTRAEKWLVVCAAGDVGGDGDSWYQDVTYGMSQAGAVDETFVIGQGL 889

Query: 737  CY---------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
             +         L+   K   +T +       P P  +    T S S++            
Sbjct: 890  RFANDGWSDLPLNQLVKPSASTSKVPDFATIPTPQHDDPLPTLSPSDLG----------- 938

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                               +RGT  H ++  L   +   ++    +L+    DS F  + 
Sbjct: 939  GAKALFGETETADDGTS-KERGTAIHLVLEHLPHIKPEDHSVVAENLLG--TDSPFLADA 995

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-GIHLTGFADRID 906
            +     ++ +     I                     +P    ++++ G  + G  DR+ 
Sbjct: 996  IETSQRLLAKPELSHIFE-------------TGTLAEVPITANLDALDGRRIHGTIDRLV 1042

Query: 907  LLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            +     V   D+K+        +   + I  Q+    AAL+         + V+     
Sbjct: 1043 VDSE-TVTAIDFKSNRMVPDVVDKTPEGILRQMGAYLAALRLV----YPSKTVSTAVLW 1096


>gi|156740410|ref|YP_001430539.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
 gi|156231738|gb|ABU56521.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
          Length = 759

 Score = 98.1 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 86/809 (10%), Positives = 212/809 (26%), Gaps = 108/809 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +        ++P     +     T +A +E+R    ++ G        + +   +
Sbjct: 39  VLTRRVAYLIGVHGVDPH---HILAVTFTNKAAREMRDRLEKLLGPGEAAALTVGTFHSI 95

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                  D +            +R   +       R  +  +++DL  +     P +   
Sbjct: 96  CARFLRRDSIHL--------GRERDFAIYDTDDQLR-VMKRVLRDLNLDEKKHAPRAIHA 146

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
           A          I   + E    +      +  +        + +      + E L   NA
Sbjct: 147 A----------ISRAKNELIDPDAYSRHAHSYF-------EEVVARCFARYQELLRGANA 189

Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  +  +R   EH       +   G ++      +  A   L+  +A+      + 
Sbjct: 190 LDFDDLLVETVRLFEEHPAVLERYQERYGFLLADEYQDTNRAQYVLLKQLASRH--HNIF 247

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       +     ++      +   +          +  L+      + + +V+  
Sbjct: 248 VVGDEDQSVYAFRGADIRNILSFERDYPEAQ---------VILLEQNYRSTQAILDVAQA 298

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
           +  RS    +            T   E  +         V +IE  ++ EEA  +A  + 
Sbjct: 299 VINRSAQRRRDKR-------LWTRNGEGVL---------VQVIEGYDQDEEAQLVAGEIA 342

Query: 380 MSL---DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             +          A++      +R ++  L        I  G             + L  
Sbjct: 343 RLIAGGAYQPGDIAIMYRTNAQSRAIEEALIARQAPYIIVGGTRFYERKEIKDALAYLRL 402

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                D ++++ ++  P    G   +              R    +  +  +   +    
Sbjct: 403 ALNPFDDISLSRVLNWPARGIGQRTQEDLER---------RAGAAAVPLYVMLHTLAANA 453

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
               + T  P          +    LL          L+    ++  T    ++ DW   
Sbjct: 454 EAAADQTTSPAPARTGEMPSRARNALLG------FLTLIDESLDRRQTLSLGALMDWLFE 507

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            V   + +  +   +  +  +    +        + E  + +   A +    +  +    
Sbjct: 508 RVGFREALRREYGDEEGDDRWNNVME-----LRNVAEQYADLPL-ASQLSTFLEEVALVS 561

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +    E+ + +  +   +++ L F  + L GL EG+ P   + +               
Sbjct: 562 DIDTLQEERNAVTCITLHQAKGLEFPVVFLVGLEEGLLPHARSAD--------------D 607

Query: 677 AEKYIGQAAHDFEMANGTRHLIYT-----RSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
            +    +    +  A   +  +Y      R+          SR+L  +            
Sbjct: 608 RDALDEERRLFYVGATRAKERLYLLHAFRRATYGRTEIATPSRFLHDIPPDLLQRAPKRG 667

Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
               Q        L    +     +  P  P  A P               +A +   I+
Sbjct: 668 YAAAQMVTGRAAALRNPRRN----QAAPVSPHSAAPDGPRAISFFAGQKVHHAQFGEGIV 723

Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELI 820
               +    ++      G     ++    
Sbjct: 724 VSSKLVEGDEEVTVAFVGKGVKRLLASFA 752


>gi|271500542|ref|YP_003333567.1| exodeoxyribonuclease V subunit gamma [Dickeya dadantii Ech586]
 gi|270344097|gb|ACZ76862.1| exodeoxyribonuclease V, gamma subunit [Dickeya dadantii Ech586]
          Length = 1169

 Score = 98.1 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 99/935 (10%), Positives = 225/935 (24%), Gaps = 117/935 (12%)

Query: 44  LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           L +  I V +    Q L+      T      +     +       + A   +      P 
Sbjct: 37  LENELILVQSNGIGQWLKLALARDTHDGGCGVAAALDIQLPSRFFWQAYRAVLGREQVPE 96

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           ++      L   +L     L    +       L           LA+ LAD+ D  +   
Sbjct: 97  TSPFDKPLLVWRLLRLLPDLLTQPEFAALARFLRQDTDLRKHYQLAERLADLFDQYQVYR 156

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKY----WTERLVELNASSPVGYQIALMRAEA 219
             W    +   +          + L    ++    W   L +   +     + AL R   
Sbjct: 157 ADWLADWSEGRDVLTSH-RRGVEPLPEEQRWQPLLWRALLADTGEALSGTSRAALHRRFL 215

Query: 220 E--------HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI- 270
           +            G    +++ G +        L++ +       + +     H    I 
Sbjct: 216 DEVDRRGDSERPAGLPSRVVVFGISSLSQQALELLAAIGRWTQVFMCVHNPCEHYWGNII 275

Query: 271 -------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                       ++               Q++   L  +    R+ +  L          
Sbjct: 276 ADKDLLRAERARQQRKPGMPEVIALEELHQHAHPLLAAWGKQGRDYIGLLDEYDQREQYE 335

Query: 324 SMVISKSFL----------------PPDTSDMRNTDILENKIPNIQ-KCFSDVALIEADN 366
           S++                        D  D+R      ++ P I     S V    A +
Sbjct: 336 SLLQPVISRIDLFNSNGEDCLLHQLQDDIRDLRPLAESRSRWPAIDSDQDSSVRFHLAHS 395

Query: 367 EREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL--------TRFGINID 414
            + E   +   L  +             ++  D N        +            I   
Sbjct: 396 PQREVEVLHDQLLAAFAADPTLRPSDVIVMVPDINSYAPHIQAVFGLIDRQKDPRYIPFS 455

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF--------------- 459
           ++        L  + L  LL+          +  L+  P  +  F               
Sbjct: 456 VADRGARQNNLVLAALEKLLHLPQSRVAVSDVLDLLDVPAVRQRFAIEEEQLPLLQRWIR 515

Query: 460 --PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
               ++   A+    L      + +     L+ ++L                  +   D 
Sbjct: 516 AANVRWGLHARQRQSLNLPDAPEQNSWFFGLRRMLLGYAVGAGGAWRDIEPLDEIGGLDA 575

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            LA  L       +  L             +   +  ++ ++        E   +     
Sbjct: 576 ALAGQLA----WLLDRLDYSWQQLCQPATPVQWCERLRVLLSTFFAADDGEDGFMLLQLD 631

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           E     L +  S  +     +      W+ +  +    +        +  +     +  R
Sbjct: 632 EGLQNWLEACESVALTQELPLSVVREHWLGLFEQTSLTQPFF-----AGAVTFATLMPMR 686

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            + F  + L G+N+G +P+N     F           ++  +          + +    L
Sbjct: 687 AIPFRHVCLLGMNDGDYPRNRVPLDFDLMGQDYRPGDRSRREDDRYL-FLEALLSARERL 745

Query: 698 IYTRSLR--ENNIPTIASRWLQRLLVLG---------------------GTDFFDNLKKR 734
             +   R   +N     S  + +L                            F       
Sbjct: 746 YISWVGRSIHDNSERPPSVLVAQLRDHLSNGWRIVNGQDVLPALTVEHRLQPFSPEYFTA 805

Query: 735 GQCYLDWTRKLDY------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
           G     + R+                           Q    +  ++   + DP   + R
Sbjct: 806 GSSLFSYAREWRAGLPSYDGASSQTAAASDAVLDDYVQDGVLTLRQLADFVRDPVRSFFR 865

Query: 789 RILKLD-------FIPHFKKDPDRTDRGTLFHNI--ITELIKKRINKNTPEINHLMKQII 839
             L +                 D  +   L H +  + +   +R       +   +++I 
Sbjct: 866 LRLNVWFEQEDPTSQDQEPFAIDALENWRLQHELIQVQKAALQRQIPREQALAEHLQRIT 925

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
                +        ++ + L   ++  F  +E++ 
Sbjct: 926 RR--GELAPGGFATVLEQDLAEPMADLFTRYEQER 958


>gi|228996315|ref|ZP_04155959.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock3-17]
 gi|228763419|gb|EEM12322.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock3-17]
          Length = 1182

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 93/924 (10%), Positives = 214/924 (23%), Gaps = 197/924 (21%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------ 229
                        +K+ ++ +     +         +   ++  +E    G   P      
Sbjct: 282  DMHPVLEKLVQIVKVFTERFQTIKRDKGMVDFTDLEHFCLQILSERTNDGELRPSPVALQ 341

Query: 230  -------IIIAGSTGSIPATARLMSTVA-NHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                   +++     +      ++  V  +      +    D       +          
Sbjct: 342  YRNKFAEVLVDEYQDTNFVQESIIKFVTKDSEQEGNLFMVGDVKQSIYRFRLAEPGLFLG 401

Query: 282  TSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVS----NEMYGRSMVISKS 330
                 T              +     + L       K++   +    +      + +  S
Sbjct: 402  KYKRFTPEGIDGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGETVGEIDYDADAELKLGAS 461

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------ 384
            +   +        I +++     +    V + +A   + EA  +A  ++  +D       
Sbjct: 462  YPEGEDVAAELLCIHQSEGEESVEGEDGVEVEKA---QLEARLMAQRIKAMVDSGYEVYD 518

Query: 385  ---------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                       +   ++      A ++  EL   GI +              +++ ++  
Sbjct: 519  RKTDSMRPVKYRDFVILLRSMPWAPQIMEELKLQGIPVYAELATGYFEATEVTVMMNVFR 578

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             I      + +A +++ P+      E  + RA            K       ++S +   
Sbjct: 579  VIDNPMQDIPLAAVLRSPIVGLNDEELAMLRA----------HEKKGSFYEVMRSFLQGA 628

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
               ++   H                                            S+SD   
Sbjct: 629  PLEEEAELHGKLQWFY------------------------NLLQGWREFARQQSLSDLIW 664

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                                                  +   +         I+ R  D 
Sbjct: 665  KVYRETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDM 724

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV-----------WPKNTAKNPFL 664
             T +   E+   + I+   +S+ L F  + + GL                      + F+
Sbjct: 725  GTARALSEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFI 784

Query: 665  SRVMQSDLNLKT---------AEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTI--- 711
                +      +          E    +    +      +  LI   ++++         
Sbjct: 785  DPRKRIKYTTLSQLAIKRKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDKEKEIEKWL 844

Query: 712  --------------------------ASRWLQRLLVLGGTDFFDNLKKR----------- 734
                                       S +  R   +      +N+              
Sbjct: 845  DSREHTDWLLPDYVRAGASCYLDWIAPSLYRHRDSEMLLELGQENIPNEIYEYDASWKVE 904

Query: 735  ---GQCYLDWTRKLDYTTKQPHYKRPK-PFPPLEAQPRTYSFSEIKQLI----------- 779
               G   L      +   +     R K P P    +          +             
Sbjct: 905  VVDGSTLLAPEPVQEEKQELLEALREKKPVPLESERKEEVYARLTWEYAYEGATAHRAKQ 964

Query: 780  ---------------NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
                           ++ +    R  +K       KK     ++GT  H ++  +     
Sbjct: 965  SVTEIKRNYQSEDGSDNAFIKKLRTPIKTRPRFMEKKGLTYAEQGTAVHAVMQHV----- 1019

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            N   P     +++ I     KE L    +        +I   F     K   + + +   
Sbjct: 1020 NLQKPITLETVQEQIAEMVNKELL--TFEQAEEIAIDRIVAFFDTDLGKRVLAAKSVERE 1077

Query: 885  IPAKMAIESIG------------IHLTGFADRIDLLKSGFVDITDYKT----GDNPKKET 928
            +P  M + +              + + G  D +   + G V + D+KT    G  P    
Sbjct: 1078 VPFTMMLSAEEAYQDWQNQSRESVLVQGVIDCMIEEEDG-VVLIDFKTDTIEGKFPGGFD 1136

Query: 929  AQKL-----IDPQLSLEAAALKAG 947
              K         QLSL A AL+  
Sbjct: 1137 QAKPILAERYKVQLSLYAKALEKS 1160


>gi|94311069|ref|YP_584279.1| DNA helicase/exodeoxyribonuclease V subunit A [Cupriavidus
            metallidurans CH34]
 gi|93354921|gb|ABF09010.1| UvrD/REP helicase [Cupriavidus metallidurans CH34]
          Length = 1187

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 94/815 (11%), Positives = 185/815 (22%), Gaps = 86/815 (10%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK--------GTKGPIIIAG 234
                      + +     +  A      +    +  A+                 +++  
Sbjct: 363  ALYRLGDALLERYQRHKGDQRAMDFADLEWLAAKLMADEETATYLQVRLDARYRHLLLDE 422

Query: 235  STGSIPATARLMSTVANHPNGA----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
               + P   R++        G      V    D       +     +  +          
Sbjct: 423  FQDTNPLQWRILQGWLAGYQGLGEKPTVFLVGDPKQSIYRFRRADARLFDAARVMLQDGF 482

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
                           +  D            GR  +                 +   +  
Sbjct: 483  GATVLRTNRTRRNRPEVLDWVNAVFDHARAEGRYPLYETQTTALGGPAGPVWLLPLVEPE 542

Query: 351  NIQKCFSDVALIEADN------------EREEAISIAIALRMSLDENK------------ 386
              +   +       D               EE   +A  L    D+              
Sbjct: 543  EAEDDEASEGDGHRDTLTQPRTQKGDSLRYEEGRRVAAWLHYLRDQVPVREGDGTRPAGW 602

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
            +   L+   +      +  +   GI         L TTL +  L++LL  +      + +
Sbjct: 603  RDMHLLVRRKTFLADYERAMREAGIPCLSPRRGGLLTTLEALDLSALLAFLMTPESDLDL 662

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A ++K PL      +  L            R          +++L L    +    T V 
Sbjct: 663  AHVLKSPLVGATDDDLVLLAMMEGEGGWWAR----------IEALGLPERVSDSLRTGVA 712

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              +  L+    +    LVD I         Y     +      +++        L    L
Sbjct: 713  RLRGWLALAPHKPVHDLVDQIYHQGEVRRRYAEAAPAAIREQVLANLDAFLKLSLD---L 769

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
            D  R      F +E + +             +     +         + E+      +  
Sbjct: 770  DGGRYPSLPKFIDELQEIRRGDEDESPDEGGMGEGVED--------TEAESDDAADNQLD 821

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK---NPFLSRVMQSDLNLKTAEKYIGQ 683
             + IL    ++ L    +IL   N      +      +   +  +    +        G 
Sbjct: 822  AVHILTVHAAKGLEAPFVILLDANHSDPAADRGGILVDWPPTSAVPRHFSAYGKRDERGM 881

Query: 684  AA---HDFEMANGTRHLI-YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
            A     D E A   R                +    ++        +     +  G  Y+
Sbjct: 882  ARAPLFDAEAALADRENWNLLYVAMTRAQQGLLVSGIKGRASKAEKEDAPGAEIAGSWYV 941

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                             P+            S           Y   A   L +D     
Sbjct: 942  RLAAA---GVGDEITAYPETDVAAVDTLTAASERIRYTDFRLRYRDAADDRLPIDDADDE 998

Query: 800  KKDP----DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
             +      D    G L H ++  + +     +       ++ ++          P+    
Sbjct: 999  AEGIVFDADAAAHGELVHALLERVSRY---PDAHGSLPDVETVLRWFPLTGAGAPNARER 1055

Query: 856  WRHLFHKI---SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK--S 910
            WR           + LE     +       V+   ++ +        G   RID L    
Sbjct: 1056 WRQQAEAAVADLRAMLEAPALRELMFPVDAVSARNEVELYDG----RGRLLRIDRLVEFD 1111

Query: 911  GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
              V I DYK                QL   AAA+ 
Sbjct: 1112 ERVVIIDYK---LRLLPQEHAGYRTQLLRYAAAVA 1143


>gi|329113820|ref|ZP_08242591.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum DM001]
 gi|326696830|gb|EGE48500.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum DM001]
          Length = 1190

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 82/808 (10%), Positives = 197/808 (24%), Gaps = 93/808 (11%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG-SIP 240
              A   L+     W            +        +  +  + G       AG  G S  
Sbjct: 391  QRALGLLREPGAAWV-MYKLDGGIDHLLLDEVQDTSPEQWRIAGDLTEEFFAGLGGRSEE 449

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
               R +  V ++        G D            ++  +             +     +
Sbjct: 450  EPPRTIFAVGDYKQSIYGFQGADPDSFREWRQKFKKRVQDAHLLWREPDLTVSFRSTAPV 509

Query: 301  DFL--DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
              L  ++  E     G V         + ++             +  + +        + 
Sbjct: 510  LKLVDEVFAESDAAKGVVEEPGQIMEHITARPGEGGRVELWPLVETEDEEDSISPWEPAQ 569

Query: 359  VALIEADNEREEAISIAIALRMSLDEN----------KKKSALITADRNLARRVKLELTR 408
                   + ++ A ++A  +   L++                L+         +   L  
Sbjct: 570  GNATRQSSRQKLADAVAGYIFRQLNKKSLSGKNPLTAGDVLVLVPRRSPFVGMLVRALKG 629

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
              I +       L+  L    + SL  A+    D + +A ++  PL              
Sbjct: 630  HNIPVVTLVRTGLAEHLAVQDMLSLCAALLLPQDDLTLACVLTSPLGGVSDDSLMALATV 689

Query: 469  NALELVAL---RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                       R               L+ +  Q +        S         A  L  
Sbjct: 690  REKGEPLWSALRERHTEQSDWKQAWNFLNGLFRQVDYLTPYELLSAALGPGGARARFLAR 749

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
               +   P+    +           S                   +    W     +T+ 
Sbjct: 750  LGPEAAEPIDELLSAAIRYQDQHPPS------------------LQGFLHWMRHSEETVK 791

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                   ++   + A+  + +     ++                +        L +    
Sbjct: 792  REAEAGGDSVRIMTAHGSKGLQARLVILPDT-------------VGLPRFEDRLFWAHDK 838

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
               ++  ++    A +  L+R ++  +  +  E+        +         +     + 
Sbjct: 839  TQNVDVPLYVPRNALSVGLTRSLKDVMRGRVVEE---YNRLLYVALTRAADRLVVCGWKP 895

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                   S W +R  V         +  +   +      L+ T ++  + +      ++ 
Sbjct: 896  GRNVPAES-WYERCRVGFEKAGATEVDFQEGGWSGPMLLLEETQQEQPHPQKSRPSSVDN 954

Query: 766  QPRTYSFSEI--------------KQLINDPYAVYARRILKLDFIPHFKKDPD------- 804
            +    S                  +  +  P A        L  +P  +   D       
Sbjct: 955  RMNVTSLPLWMGTAPLWKPILPEAESPLARPLAPSKPDDTMLGPLPPVRSPLDIAAVTPA 1014

Query: 805  -----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
                    RG L H+++  L    + +     +  + +        E       +I    
Sbjct: 1015 KAREAAFRRGNLVHSLLQFLPNCPVEQQPAMAHQWLARPASGLSSHEATVLAQQVIAVLR 1074

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
              ++   F   +   ++      V         + G  + G  DR+ +L +  V + D+K
Sbjct: 1075 LPELVDLF---DPTARAEQRLAGV---------ANGQVIVGQVDRLRVLPN-KVLVCDFK 1121

Query: 920  TGD--NPKKETAQKLIDPQLSLEAAALK 945
            TG     + +    L   Q++   A L+
Sbjct: 1122 TGRHAPRRVQDTPVLYLRQMAAYRALLQ 1149


>gi|311900006|dbj|BAJ32414.1| hypothetical protein KSE_66550 [Kitasatospora setae KM-6054]
          Length = 288

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 80/247 (32%), Gaps = 24/247 (9%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S     +  P     R I +L   P          RGTL H ++  L      + T
Sbjct: 18   GLSPSRAGDFMTCPLLYRLRVIDRLPEPPSQ-----AATRGTLVHAVLERLFDHPPAERT 72

Query: 829  PEINHLMKQIIDSHFEKENLP--------PHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
            PE    + +        E           P     W     K+   +   E+  +  +  
Sbjct: 73   PERARGLLEPQWERLLGERPELAELFPGEPGELAGWLADAGKLVDRWFRLEDPTR--LHP 130

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
            +   +  + A+ S G+ L G+ DR+D+  SG V + DYKTG  P     +     Q+   
Sbjct: 131  VERELYVETALAS-GLPLRGYIDRVDVAPSGEVRLVDYKTGRAPS-RDFEGKAMFQMKFY 188

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
            A  +               L  + L     +     D+    + E   ++L     I   
Sbjct: 189  ALVVWR-----WKGVVPKRLQLVYLGGGGDVVTYDPDEADLLSVERKLEAL--WEAISAA 241

Query: 1001 LQNGEQP 1007
            +  G+ P
Sbjct: 242  VATGDFP 248


>gi|283768592|ref|ZP_06341504.1| hypothetical protein HMPREF9013_1064 [Bulleidia extructa W1219]
 gi|283104984|gb|EFC06356.1| hypothetical protein HMPREF9013_1064 [Bulleidia extructa W1219]
          Length = 858

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 61/432 (14%), Positives = 146/432 (33%), Gaps = 42/432 (9%)

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                L+          +  T+ +   L   +L  D   + GLN   +P   +K+   +  
Sbjct: 375  FFLELVSQFQSIQLPNQIGTIMVTD-LRHPVLQADVSYIVGLNGHTYPNVPSKSGIFNES 433

Query: 668  MQSDLNLKTAEK----YIGQAAHDFEMANGTRHLIYTRSLRE-NNIPTIASRWLQRLLVL 722
              + +   + E+    Y+ Q +  F      + + ++ S ++        S  +Q+L   
Sbjct: 434  YYAQIPYPSYEERYHTYLSQLSWIFHSG---KQIHFSYSQKDYEGKKLEVSYDIQKLF-- 488

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
                   + K + +   +   +     +             +      S S I++    P
Sbjct: 489  -------SQKAQTKKAKELLPRKRNRHEDNLSSSFMESWFTQNPILKGSVSSIEEWYRCP 541

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
            Y  +  R+LKL     F+  P+    GT+ H+++ + + ++           ++  +D +
Sbjct: 542  YQYFLNRLLKLKEQNVFE--PNSLYIGTITHSLLEKALNEKKKLYYELSLQDLQSQLDPY 599

Query: 843  FEK-ENLPPHIDIIWRHLFHKISH------SFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
            F+  + L P    +   +  K++        +L+  E+    ++ I      ++ +   G
Sbjct: 600  FQLWKVLDPDRLEMISLIKDKLASNLYFCLQYLKEYEQNYDFLDPIASEQEFQIGL-FDG 658

Query: 896  IHLTGFADRIDLL-KSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            + L G  DR+D   ++    + DYK+      K         QL      L+     ++ 
Sbjct: 659  LELVGKIDRLDQDQRNQDYYLYDYKSSLHKMDKSKYLSGQQIQLMTYKLVLEQSGDKKVR 718

Query: 954  CRKVANLFYIRLKQKFKIDCITN-DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012
                   +Y  L  + +          + S ++  +   +   + +  +    Q F    
Sbjct: 719  AT-----YYFSLLPEKQHLPSLQYKFDRRSVEKDPQDFYE--TDYLRSIFLQNQSFRGW- 770

Query: 1013 RLSEKSNIQSEY 1024
               +     S+Y
Sbjct: 771  ---KLDEDVSDY 779


>gi|296283899|ref|ZP_06861897.1| ATP-dependent exoDNAse beta subunit [Citromicrobium bathyomarinum
            JL354]
          Length = 1158

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 90/833 (10%), Positives = 195/833 (23%), Gaps = 110/833 (13%)

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKG 228
               +   A +  +  +  W E                               + +  +  
Sbjct: 326  LAEYLTPALELGRRFALRWDEAKRVHGLVDFDDQIARAATLLGNSEMAQWIGYKLDRSFD 385

Query: 229  PIIIAGSTGSIPATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
             I++  +  +  +   ++  +         A       +    D       +     +  
Sbjct: 386  HILVDEAQDTNDSQWAIIDALTQDFFDGLGAAGARLRTIFVVGDYKQAIFGFQGTEPRLF 445

Query: 280  -------------------NITSSNTTYSTHPQYSLAKLLDF---------LDIKREDVK 311
                                +          P   LA+L            LD     V 
Sbjct: 446  VDKREQYDARINSAIANAEALAHETREAPLVPLAPLARLGLERNFRSSQVILDFVDRAVA 505

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
             +G  +  M G  +  +    P   +        E+  P   +       + A   R  A
Sbjct: 506  HVGTQAMGMPGEEVQHTGEDRPGRVTLWAPIRAEESDDPEAVEEDGAETWLPAPERRM-A 564

Query: 372  ISIAIALRMSLDE-------------NKKKSALITADRNLARRVKLELTRFGINIDISAG 418
              IA  ++  L++                   L+   R LA  +   L   G+ +     
Sbjct: 565  DRIAAQVKQWLEDGHPLTKGGTRRAGPGDIMILVRKRRALAGLIVARLHAAGVPVAGVDR 624

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
            + L   L    L + L    +  D + +A L+  PL  +   +      ++    +    
Sbjct: 625  LRLGAPLAVKDLLAALRFAAQPRDDLMLANLLVSPLGGWSQDDLLEHGLRDKSVGLWDHI 684

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
             ++   +           A +                   L     D   + +  L    
Sbjct: 685  RRSDAPLC-------MATADRLRALLARVDYEHPQALLHWLLTGPWDGRRKLVARLGREA 737

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
             +        + +   + T +    +           WF+   + L    +   +    +
Sbjct: 738  NDPIDELVGAAFAYCAEHTPSLQGFLN----------WFDASDEELKREAAGSGDAVRVL 787

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
             A+  + +     ++   T  P    +    +            T+ L  L +       
Sbjct: 788  TAHGSKGLQAPIVILADATGNPDRGPARAGELATDDG------RTVPLPSLPKEAKAGPV 841

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL--RENNIPTIASRWL 716
                       +    K A +        +         +Y        +     AS + 
Sbjct: 842  V----------AAEEAKKAREREEHWRLMYVAMTRAEEALYIGGALLPSDKDVPEASWYA 891

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP-LEAQPRTYSFSEI 775
            Q   +       +        + +           P                        
Sbjct: 892  QAAALFDSEGGGEGEGVSDPIWGERHDLGTLADIAPPAPDAASRAQRPALPEWATRAPAA 951

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            +     P A  A         P      +   RGTL H ++  +     +    +     
Sbjct: 952  EPSPPRPLAPSAAGDDLAPNPPGLATGAEAAQRGTLIHRLLERM----PDIAPEDREARG 1007

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
               + +     +      ++ + L        L+H +            +     +E   
Sbjct: 1008 SAWLAAQAGDLSEGARAAMLEQAL------GVLDHPDFAALFAPGALAEVSLAATVEGQ- 1060

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
              +TG  DR+  +    V + DYKT        E        Q+S  A AL A
Sbjct: 1061 -VVTGKLDRL-CVAEEEVLVVDYKTTRRAPTSLEQVPTATLRQMSAYAHALAA 1111


>gi|290580138|ref|YP_003484530.1| putative exonuclease [Streptococcus mutans NN2025]
 gi|254997037|dbj|BAH87638.1| putative exonuclease [Streptococcus mutans NN2025]
          Length = 1212

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 102/905 (11%), Positives = 247/905 (27%), Gaps = 123/905 (13%)

Query: 147  WLAKNLADII---DIIETEEKKW-------EDLHALKN--------EKYGMWWLLAADFL 188
             LA ++A +I   + +     K+         L  LK+        ++      +   F 
Sbjct: 304  KLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFA 363

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATA 243
               SK + +  ++ NA          ++   E      L       +++     +     
Sbjct: 364  LDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQE 423

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS-------- 295
            R++  ++   NG       D       +     +  N    +     HP++         
Sbjct: 424  RMLELLS---NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDF--QEHPEHGKLILLKEN 478

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
                 + LD        L + +                         +  +  I + +  
Sbjct: 479  FRSQSEVLDATNSVFTHLMDETVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQ 538

Query: 356  FSDVALIEADNER---EEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRF 409
             +    +E D+ +    E   +A  +    +E     +   L+ + R     +      +
Sbjct: 539  QNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDY 598

Query: 410  GINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
            GI +    G      ++   ++   L +I    +  A+  L++ P+  F   +      +
Sbjct: 599  GIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQ 658

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
            N  +       +   +  + +   +  I    +      +++ LS     L   L D I 
Sbjct: 659  NLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWRKFSLLNSLYDLIW 718

Query: 529  QC------ITPLVTYKTNKNSTCGNLSISDWTKLTVTC-LQNVCLDEHRKLPNLWFEEEG 581
            +          + +   ++       +++           + +          L  + + 
Sbjct: 719  KIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDL 778

Query: 582  KTLSSLFS------KIIETGSCIKA----------------------------NAIEWID 607
              +             I     ++                               I++I 
Sbjct: 779  ADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIA 838

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
             +   ++ + +        TL      +  L          L      ++  K   + + 
Sbjct: 839  DMKEELEEKLLPIVKVSMDTL-PYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKG 897

Query: 668  MQSDLN-----------LKTAEKYIGQAAHDFEMAN----GTRHLIYTRSLRENNIPTIA 712
             Q  L            L  A++       D+ +A         L +  S   +   T  
Sbjct: 898  SQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTED 957

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQ--CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
                         D   + ++       LD    ++   +        P     +Q + +
Sbjct: 958  KMGSLEAEQAYDADNLKDNRQSDDIARALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKF 1017

Query: 771  SFSEIKQLINDPYAVYARRILKLD-FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
                ++    +      +   K +      K   D T  G+  H ++  L       +  
Sbjct: 1018 YEPVMETEGVEVMQTSYQTKPKFELPQFSKKAGQDPTALGSSVHELMQRLHLS-EQVSLE 1076

Query: 830  EINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI--QSSIEKIFVNIP 886
            +I   + ++ ++ + +K                KI H F   +     Q++ +K++   P
Sbjct: 1077 DILTALAELSVEENVKKAIQ-----------VDKILHFFQTSQLGKLIQANADKVYREAP 1125

Query: 887  AKM----AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
              M            + G  D   +L    + + DYKT      +  ++    Q++L A 
Sbjct: 1126 FAMLQADPASGEDYVVRGIIDG-YILFDNRIVLFDYKTDKFTNSQAIKERYQGQMTLYAQ 1184

Query: 943  ALKAG 947
            AL   
Sbjct: 1185 ALSQS 1189


>gi|229003980|ref|ZP_04161785.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock1-4]
 gi|228757256|gb|EEM06496.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock1-4]
          Length = 1182

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 93/924 (10%), Positives = 213/924 (23%), Gaps = 197/924 (21%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------ 229
                        +K+ ++ +     +         +   ++  +E    G   P      
Sbjct: 282  DMHPVLEKLVQIVKVFTERFQTIKRDKGMVDFTDLEHFCLQILSERTNDGELRPSPVALQ 341

Query: 230  -------IIIAGSTGSIPATARLMSTVA-NHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                   +++     +      ++  V  +      +    D       +          
Sbjct: 342  YRNKFAEVLVDEYQDTNFVQESIIKFVTKDSEQEGNLFMVGDVKQSIYRFRLAEPGLFLG 401

Query: 282  TSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVS----NEMYGRSMVISKS 330
                 T              +     + L       K++   +    +      + +  S
Sbjct: 402  KYKRFTPEGIDGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGETVGEIDYDADAELKLGAS 461

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------ 384
            +   +        I +++     +    V + +A   + EA  +A  ++  +D       
Sbjct: 462  YPEGEDVAAELLCIHQSEEEESVEGEDGVEVEKA---QLEARLMAQRIKAMVDSGYEVYD 518

Query: 385  ---------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                       +   ++      A ++  EL   GI +              +++ ++  
Sbjct: 519  RKTDSMRPVKYRDFVILLRSMPWAPQIMEELKLQGIPVYAELATGYFEATEVTVMMNVFR 578

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             I      + +A +++ P+      E  + RA            K       ++S +   
Sbjct: 579  VIDNPMQDIPLAAVLRSPIVGLNDEELAMLRA----------HEKKGSFYEVMRSFLQGA 628

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
               ++   H                                            S+SD   
Sbjct: 629  PLEEEAELHGKLQWFY------------------------NLLQGWREFARQQSLSDLIW 664

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                                                  +   +         I+ R  D 
Sbjct: 665  KVYRETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDM 724

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV-----------WPKNTAKNPFL 664
             T +   E+   + I+   +S+ L F  + + GL                      + F+
Sbjct: 725  GTARALSEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFI 784

Query: 665  SRVMQSDLNLKT---------AEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTI--- 711
                +      +          E    +    +      +  LI   ++++         
Sbjct: 785  DPRKRIKYTTLSQLAIKRKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDKEKEIEKWL 844

Query: 712  --------------------------ASRWLQRLLVLGGT--------------DFFDNL 731
                                       S +  R   +                   +   
Sbjct: 845  DSREHTDWLLPDYVRAGASCYLDWIAPSLYRHRDSEMLLELGQGNIPNEIYEYDASWKVE 904

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPK-PFPPLEAQPRTYSFSEIKQLI----------- 779
               G   L      +   +     R K P P    +          +             
Sbjct: 905  VVDGSTLLAPEPVQEEKQELLEALREKKPVPLESERKEEVYARLTWEYAYEGATAHRAKQ 964

Query: 780  ---------------NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
                           ++ +    R  +K       KK     +RGT  H ++  +     
Sbjct: 965  SVTEIKRNYQSEDGSDNAFIKKLRTPIKTRPRFMEKKGLTYAERGTAVHAVMQHV----- 1019

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            N   P     +++ I     KE L    +       ++I   F     K   + + +   
Sbjct: 1020 NLQKPITLETVQEQIAEMVNKELL--TFEQAEEIAINRIVAFFDTDLGKRVLAAKSVERE 1077

Query: 885  IPAKMAIESIG------------IHLTGFADRIDLLKSGFVDITDYKT----GDNPKKET 928
            +P  M + +              + + G  D +   + G V + D+KT    G  P    
Sbjct: 1078 VPFTMMLSAEEAYQDWQNQSRESVLVQGVIDCMIEEEDG-VVLIDFKTDTIEGKFPGGFD 1136

Query: 929  AQKL-----IDPQLSLEAAALKAG 947
              K         QLSL A AL+  
Sbjct: 1137 QAKPILAERYKVQLSLYAKALEKS 1160


>gi|269138066|ref|YP_003294766.1| exonuclease V gamma subunit [Edwardsiella tarda EIB202]
 gi|267983726|gb|ACY83555.1| exonuclease V gamma subunit [Edwardsiella tarda EIB202]
 gi|304558110|gb|ADM40774.1| Exodeoxyribonuclease V gamma chain [Edwardsiella tarda FL6-60]
          Length = 1128

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 78/745 (10%), Positives = 181/745 (24%), Gaps = 75/745 (10%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
              I V +    Q L+ E     G  + I      L           +L         S 
Sbjct: 32  REVILVQSPGMSQWLQMELARSFGIAANID---FPLPATFIWDLFTRVLPDIPQRSAFSK 88

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                +L  L+  + ++             LS          LA  +AD+ D       +
Sbjct: 89  DAMTWKLMWLLPQFLDRPAFAPLA----HYLSDDTDRRKHFQLAARIADLYDQYLVYRPE 144

Query: 166 W-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
           W +        +           L +A + +TE+L +             ++A       
Sbjct: 145 WLQRWEQGGLIEGLDSAQQWQAPLWVALRDYTEQLGQPQW-HRANLYQRFIQALKVSDRA 203

Query: 225 GT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
                  + I G +   P     +  +  H +  ++      +    I +          
Sbjct: 204 PPGLPRRVFICGISALPPVYLEALRALGEHIDVHLMFTNPCRYYWGDIQDYAFLARLQSR 263

Query: 283 SSNTTY-------------------------STHPQYSLAKLLDFLDIKREDVKRLGNVS 317
                                              Q     LL        D   L    
Sbjct: 264 RRRDYLLAQRSLGESQSALFRTPEQAAALFSEEGEQALSNPLLASWGKLGRDHMYLLAQH 323

Query: 318 NEMYGR--------------SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                                  + +       +    T     +   +      +++  
Sbjct: 324 GPQEVSAFVDLAQETLLQRIQRDMLELEDHACIAAAGQTLQDSRQKRRLASDDRSISVHV 383

Query: 364 ADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINID 414
             + + E   +  +L      +     +   ++ AD +        +         +   
Sbjct: 384 CHSPQREVEVLHDSLLDMFAADATLSARDVIVMVADIDSYAPFIQAVFGNAPAGRYLPFA 443

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALE 472
           IS             L +LL+      +   +  L++ P    +F   +  +   ++ +E
Sbjct: 444 ISDRSARQLHPVVQALLALLDLPHSRFNAEQVLALLEVPALAARFDIDDDGIRLLRHWVE 503

Query: 473 LVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKEL-AVLLV 524
              +R   +   + DL        +                           +  +  + 
Sbjct: 504 ESGIRWGLDDDAVRDLALPATGQHTWQFGLTRMLLGYAMDSRSGEWQGVLPYDESSGTIA 563

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
           +   Q    L   +  +       +++ W  L    L++                  +  
Sbjct: 564 ELAGQLAQFLAALREWRQRLGQMQTLAQWQPLCRALLEDF--FVTDADSEAVCALIEQQW 621

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             L  + + +            D +T  +D + +  +      +     +  R + F  +
Sbjct: 622 LKLIEEGLASAYPETLPITVLRDELTARLDNQRISQRFLAGP-INFCTLMPMRSIPFKVV 680

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
            L G+N+GV+P+  A   F     ++    ++             + +  + L  +   R
Sbjct: 681 CLLGMNDGVYPRTLAPLGFDLMAGKAQRGDRSRRDDDRYL-FLEALLSAQQRLYISYIGR 739

Query: 705 E--NNIPTIASRWLQRLLVLGGTDF 727
              +N     S  +  LL       
Sbjct: 740 SVQDNSERYPSVLVSELLEYIAQSH 764


>gi|330826182|ref|YP_004389485.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
 gi|329311554|gb|AEB85969.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
          Length = 796

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 69/672 (10%), Positives = 145/672 (21%), Gaps = 56/672 (8%)

Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171
           LA L   ++                   +         K LA  I   + E  +  D   
Sbjct: 112 LAGLPQSFQILDTQDQLSAVKRLCKQFNVDEERFPP--KQLAYFIAGCKEEGLRPRD--- 166

Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGT 226
                                + + E+             +       ++       +  
Sbjct: 167 -VEVHDSDTRKKV-----ELYQLYEEQCQREGVVDFGELMLRSFELLRDNDPVRVHYQRR 220

Query: 227 KGPIIIAGSTGSIPATARLMSTVA------NHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              I++     +       +  +A             V+   D       +      +  
Sbjct: 221 FRHILVDEFQDTNRLQYAWLKQLAGDVVDGRLVTQGGVIAVGDDDQSIYAFRGARVGNMQ 280

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                                                 ++       S      +     
Sbjct: 281 DFVREFDVR--------------------------HQIKLEQNYRSYSNILDSANALIAH 314

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRN 397
           N+  L   +   Q     V + EA  +  EA  I   +R  + E    + + A++     
Sbjct: 315 NSRRLGKNLRTTQGPGEPVRVYEAPTDLAEAQWIVDEIRQLVREGPMPRSEIAVLYRSNA 374

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    +   +  G+            + L  +   +D  +   +V  P    
Sbjct: 375 QSRVIESALFNASVPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFMRVVNFPPRGI 434

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G       +        +L    +S       +L                   R      
Sbjct: 435 GARTLEQLQDAARGSGCSLHDAVSSVPGKAGANLGAFVAMVDVMREQTQGRNLRAIIGQV 494

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             +  L++H           +          S     +        + LDE         
Sbjct: 495 LESSGLLEHYRNEKEGADRLENLDELISAAESFV-TQEGFGRDAVALPLDETGAALTQSP 553

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
             +G   +    +     +            +T                 + ++    S+
Sbjct: 554 ASQGLDPNRPLLQQPLVDTDTGETLSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHASK 613

Query: 638 LLNFDTLILGGLNE--GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
            L FD + +GG+ E         +    L    +      T  +     +H        +
Sbjct: 614 GLEFDCVFIGGMEEGLFPHENAMSDQGGLEEERRLMYVAITRARKRLYLSHAQTRLLHGQ 673

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                RS   + +P  A +WL       G   +    +    Y    R            
Sbjct: 674 TRYNVRSRFFDELPEEALKWLT--PRQQGFGSYAPDSRAASAYGAGARAGFGFNAAAFAS 731

Query: 756 RPKPFPPLEAQP 767
            P P    E   
Sbjct: 732 PPVPPRKEEPAH 743


>gi|304389518|ref|ZP_07371481.1| RecB family exonuclease [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
 gi|304327328|gb|EFL94563.1| RecB family exonuclease [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
          Length = 285

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 82/251 (32%), Gaps = 28/251 (11%)

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
            P P PP        S S  KQ    P     + + KL              RG+L H ++
Sbjct: 8    PAPRPP------ALSASSAKQFQQCPLKWRFKYVDKLPEPQSP-----AALRGSLVHKVL 56

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEH 870
             ++      +                         E L    +   +    ++  ++   
Sbjct: 57   EDMFDLPPAERQAPTVRETVDRAWEKVTDGAYKLSEVLAQTSEQELKAAARQLIDAYFSL 116

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
            E+  +  +      +  +  + S G+ L GF DR++   +G V I DYKTG  P      
Sbjct: 117  EDPRR--LHPSGRELGVETVL-SSGLRLRGFIDRVEQAGNGDVRIIDYKTGKAPDMRFTG 173

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
            +    Q+ + A   +     ++  ++   L ++          +T D    + DE + + 
Sbjct: 174  E-YVFQMRMYALLYREQ--YRVTPKRT-QLLFL----GGNPQVLTFDPTDANVDEFAAEI 225

Query: 991  LKNLIEIVTLL 1001
                 +I   L
Sbjct: 226  NALWSDIAAHL 236


>gi|269977462|ref|ZP_06184434.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1]
 gi|306819108|ref|ZP_07452822.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239]
 gi|269934378|gb|EEZ90940.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1]
 gi|304648084|gb|EFM45395.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239]
          Length = 900

 Score = 98.1 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 86/690 (12%), Positives = 180/690 (26%), Gaps = 69/690 (10%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     + G  +  +  + +          A+             
Sbjct: 104 EILAITFTNKAAGEMRERVETLVGNAAKYM-WVSTFHSSCVRILRAEAETL--------G 154

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           I R   +       +  L  IIK    +     P S A  I  AK           E  +
Sbjct: 155 ITRSFSIYD-TADTKALLTRIIKGRGLDPKRFTPKSFAARISNAK----------NELVE 203

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
                 +            +         + + L   NA         ++     H    
Sbjct: 204 PATFAEMAAPD------KISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRRHPEIL 257

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     + PA  +L+  +A  P G   L G     P A    + +    
Sbjct: 258 AKYRDKFRYVLVDEYQDTNPAQYQLVRLLARDPLGDPRLDGALGAHPGAGLTVVGDS--- 314

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                        Y+        +I+  +    G  +  +              +     
Sbjct: 315 ---------DQSIYAFRGATIR-NIEEFEQDFPGATTVYLEQNYRSTGTILSVANAIISE 364

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNL 398
           N+   +  +           +  AD ER+EA  I   +R +        + A+     + 
Sbjct: 365 NSGRHKKNLWTEAGDGPKAIMFAADTERDEAAFIIREIRDAHTAGTPWDEFAVFYRTNSQ 424

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  LTR  +   +  G             + L A     D   +  ++  P    G
Sbjct: 425 SRALEEMLTRENVPYRVVGGTKFYDRKEIKDAIAYLTAAANPADDGNLLRILNEPKRGLG 484

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
              +   R    L   +    +     +          A                    E
Sbjct: 485 DVAQTKIREAARLSGTSF--GQAMRGFITGGVHEGQLSAKATTALASLVNLLDNLRGLDE 542

Query: 519 LAVLLVDHILQCITPLVTY--KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
               L + +   +            N+   +  I +  +L     +    +   +L +  
Sbjct: 543 AGAPLDEILGTALEDSGYLPKLRASNNPQDDARIENLLELHAVAEEFSLSEPDSRLADFL 602

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                   +             K  A    +       G+   P  E    + ++    +
Sbjct: 603 ERISLVADTDQLPDQGSKEVAAKEMAPHEPETNVSEASGDHPNPAPETKPEVTLMTVHTA 662

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F+T+ + G+ +G++P + +              L   E    +    +      R 
Sbjct: 663 KGLEFNTVFVTGMEDGLFPHSRS--------------LDDPEAIEEERRLAYVAVTRARR 708

Query: 697 -LIYTRSLRE----NNIPTIASRWLQRLLV 721
            L  TR+       + +   ASR+L  +  
Sbjct: 709 QLYLTRAAARTVFGDTMNMPASRFLNDIPA 738


>gi|261855181|ref|YP_003262464.1| exodeoxyribonuclease V, subunit gamma [Halothiobacillus
           neapolitanus c2]
 gi|261835650|gb|ACX95417.1| exodeoxyribonuclease V, gamma subunit [Halothiobacillus
           neapolitanus c2]
          Length = 1183

 Score = 98.1 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 70/833 (8%), Positives = 186/833 (22%), Gaps = 82/833 (9%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE---ITGKKSTILPIIKSL 81
           LL   L++  +  PL P  L + T  V +    Q LR               I   I+ +
Sbjct: 25  LLQQVLIDWLKRHPLAP--LENETFLVQSNGMAQWLRLGLARPRSAQDGGLGIATGIEMI 82

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK-DLYPESPLSLPI 140
                +      +L  +  P  + + +   + RL+ +  N +       L          
Sbjct: 83  LPARLQWQCYRAVLGTDFVPAEAPLDKDKLVWRLMRLLPNLIHTPSFLPLRHYIVTDQRP 142

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW--------------WLLAAD 186
                  LA  +AD  D  +     W       ++                   W     
Sbjct: 143 DDRRLYQLALRVADQFDQYQVYRADWLRHWQEGHDDLPAHETRLPDEQRWQPPLWRALLA 202

Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            ++               +            +           I++ G +   P    ++
Sbjct: 203 DIRERQDDRDGIEFAAGRADLHTAFRKAASEQKARPEGLP-RRIVVFGLSSIAPQVLDVL 261

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNT--ITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
           +  +      +       +    I +   +  +         +      ++   L  +  
Sbjct: 262 AVASRWSQVIVCFLNPCEYYWGDIIDGHQLFAQRYQGRRPYKSAPNETAHAHPLLAAWGR 321

Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD-----------------MRNTDILEN 347
             R+ ++ L          +  ++ +       D                     ++   
Sbjct: 322 QGRDLMRLLDQFEENAQLAANPLTLTPFESTVVDSAKSSLLTLIQDDILKLRTPDELRAL 381

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
                      +    A +   E   +   L  + + +         ++  D +L     
Sbjct: 382 NRRLEPDQDHSLHFHIAHSPLREVEILHDQLLAAFEADTSLKPTDIIVMVPDMSLYAPAI 441

Query: 404 LEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL----------NDFMAI 446
             +           I   IS           + L  +LN                  + +
Sbjct: 442 SAIFGRFGRDDPQHIPFSISDQAASGQVALINALEQILNLPTSRLLRSELLDLLGSPLLL 501

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
           A             +   S           R        M+  +                
Sbjct: 502 ARFGISETDLTTLHDWIDSAGIRWGLNAQHREAFGVPPGMEQNTWAFGLNRLLLGYLSGD 561

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVTCL---- 561
                   E   +   +   ++  +  L               + ++W       +    
Sbjct: 562 ENAIWDEIEPHPVMDGISAELVGKLAQLVQQLDKYTQRLSEKCTPTEWVARLRRLMTDFF 621

Query: 562 -----QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                QN       ++           L    +     G   + +           ++  
Sbjct: 622 SLSDTQNHLDSPEIQIEMDTLARLHNELERWLADCSVAGFENEIDIETVRHAWLNRLEPH 681

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +  +      +     +  R + +  + L G+++  +P+    N F     +     + 
Sbjct: 682 RLHQRFI-VGGVNFATLMPMRAIPYRHIYLLGMDDANYPRRQTPNDFDLMNGRYRPGDRA 740

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP---------TIASRWLQRLLVLGGTDF 727
             +          +      L  +   R  N           +    +L +   +     
Sbjct: 741 RREDDRYL-FLEALLAARERLSISWVGRNINNNKIRPASVLVSQLRDYLDQFWAVPEPHS 799

Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
              ++        ++R+         +     +  +    +  S +E+   + 
Sbjct: 800 CSEIQTTEHPLHPFSRRYFSADNTDLFTFANDWRAVHDSTQGTSKTELPIWLP 852


>gi|118471354|ref|YP_889771.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2
           155]
 gi|118172641|gb|ABK73537.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2
           155]
          Length = 783

 Score = 98.1 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 88/745 (11%), Positives = 203/745 (27%), Gaps = 94/745 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T +A  E+R   +++ G ++  +  + +              L   LN   S
Sbjct: 65  GQVLAITFTNKAAAEMRERVVQLVGPRAKAM-WVSTFHSTCVRILRNQASLLPGLNSNFS 123

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+++    L    K   P                   LA+ I  ++ E  
Sbjct: 124 IYDSDDS-RRLLMMIGKDLGLDTKRYSPRL-----------------LANGISNLKNELI 165

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             E   A  +E       + A       +        L+    +G  +A+++A  +    
Sbjct: 166 GPEQAAAEASEASDEMATVIAQVYGEYQRRLRAA-NALDFDDLIGETVAVLQAFPQIAQY 224

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANHP-------NGAIVLPGLDCHIPTAIWNTIT 275
            +     I++     +  A   L+  +  H          + +    D       +   T
Sbjct: 225 YRRRFRHILVDEYQDTNHAQYVLVRELVGHHLEDHDGVPPSELCVVGDADQSIYAFRGAT 284

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++      +   +T            L+      + + N +N +  R+           
Sbjct: 285 IRNIEDFERDFPDATTIL---------LEQNYRSTQTILNAANAVIARN----------- 324

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALI 392
                 T   E ++         +    ADNE +EA  +A    AL      N    A+ 
Sbjct: 325 ------TGRREKRLWTDAGQGELIVGYVADNEHDEARFVADEIDALTDRHGYNYNDIAVF 378

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
               N +R ++    R GI   +  G+          + + L  +    D +++  ++  
Sbjct: 379 YRTNNSSRALEEVFIRAGIPYKVVGGVRFYERREIRDIVAYLRVLDNPGDSVSMRRILNT 438

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P    G   +           V+                          NT      +  
Sbjct: 439 PRRGIGDRAEACVAVYAENTGVSFNEALQ----------AAAEGRVPMLNTRSEKCIASF 488

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
            +   +L   L + +   +  ++     +     +    D  +     L N+        
Sbjct: 489 VQMLDDLRGKLDEELGDLVEAVLERTGYRRELEASSDPQDLAR-----LDNLNELVSVAH 543

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
                    + L+    + ++          ++++ ++ + D + +  +      + ++ 
Sbjct: 544 EFSIDLANAQALAEESDEPVDEDIPDTGVLAQFLERVSLVADADDIPEEGS--GVVTMMT 601

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L F  + + G  +G++P   A              L    +   +    +    
Sbjct: 602 LHTAKGLEFPAVFVTGWEDGMFPHMRA--------------LGDPNELSEERRLAYVGIT 647

Query: 693 GTR-HLIYTRSLRENNIPTIA----SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
             R  L  +R+   ++         SR+L+ +                            
Sbjct: 648 RARQRLYLSRAKVRSSWGQPMLNPESRFLREIPQELIDWRRIEAPTPAYAAPGRMSSSGG 707

Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSF 772
                   RP P  P   + +    
Sbjct: 708 GGIGFGSPRPSPNRPGGGRNKPLMV 732


>gi|167035663|ref|YP_001670894.1| exodeoxyribonuclease V subunit gamma [Pseudomonas putida GB-1]
 gi|166862151|gb|ABZ00559.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas putida GB-1]
          Length = 1159

 Score = 98.1 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 112/986 (11%), Positives = 256/986 (25%), Gaps = 108/986 (10%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79
           L   +V   R  PL P  L +    V +    Q L+          ++ G        ++
Sbjct: 21  LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPLEDDLGGCGIAAAIDVQ 78

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             G  + + + +  +L  +  P VS + +     RL+ +    +     +      L+  
Sbjct: 79  LPGSFMWQLYRS--VLGRDEIPEVSLLDKAPLTWRLMRLLPALIERPHFEPLRRF-LTDD 135

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-----GMWWLLAADFLKIASKY 194
                   LA+ LAD+ D  +     W  L      ++                +  ++ 
Sbjct: 136 SDLRKRYQLAERLADLFDQYQVYRADW--LKDWAAGEHVLNTARGERKALPPGNRWQAEL 193

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMST 248
           W   L ++        +  + +   E +    + P      +I+ G +         ++ 
Sbjct: 194 WRALLEDVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPPRVIVFGISSLPAQALEALAG 253

Query: 249 VANHPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
           +A      + +     H    I             ++            +  Q++   L 
Sbjct: 254 LARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQSLHQHAHPLLA 313

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNTDIL 345
            +    R+ +  L +  +    + +                               T+  
Sbjct: 314 AWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSDGSPTTLLNQLQDDILELRPLTETR 373

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARR 401
           E   P        +    A + + E   +   L            +   ++    +    
Sbjct: 374 ELWPPVDTAKDRSIRFHIAHSPQREVEILHDQLLARFSADATLRPRDVIVMLPAIDTYAP 433

Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP- 453
               +           I   ++             L  LL           +  L+  P 
Sbjct: 434 HIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSRFAVSEVLDLLDVPA 493

Query: 454 -LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHV 505
             A+FG  E  L      +E   +R   N+     L       ++     +        V
Sbjct: 494 VRARFGIRENDLPTLHRWIEGAGIRWGLNAEQRASLGLPAGLEQNSWRFGLRRMLLGYAV 553

Query: 506 PHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
               +    E  +    L    I   +  L   +    +     +++ W +     LQ  
Sbjct: 554 GVGVACDGIEPYDEIGGLDAALIGPLVALLDALEVACQALSEPATVTQWGERLHALLQVF 613

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
            L E  +   L  +       S        G           +     +D   +  +   
Sbjct: 614 FLAEGERDEYLLMQ-LQDLRDSWLEVCETVGLQDPLPLAVVREAWLSGLDQGKLSQRFLA 672

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
             ++     +  R + F  + L G+N+G +P+      F           ++  +     
Sbjct: 673 G-SVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQQPLDFDLMASDYRPGDRSRREDDRYL 731

Query: 685 AHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                + +    L  +   R   +N    AS  + +L     T +     ++GQ      
Sbjct: 732 -LLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHIATGWHLAGMQQGQPAEPGE 790

Query: 743 RKLDYTTKQPHY-------------------------------KRPKPFPPLEAQPRTYS 771
           + L   T++                                  ++ +P  P        S
Sbjct: 791 QLLHALTQEHPLQPFSARYFQKGSPLFSFAHEWQLLHQHGETDEQGEPGLPPYLGDEALS 850

Query: 772 FSEIKQLINDPYAVYARRILKL--DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
            +++   +  P   +  + LK+  + +     D +     TL     +E +         
Sbjct: 851 LTQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDTLQRYGASESLLGAALAEPD 910

Query: 830 EINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                ++           LP        +    +     L+  +++        V     
Sbjct: 911 NAEQALRAQARRLQACGLLPLAGFGESLQSELIEPLPDLLQRHQQLLQRW-PQLVEGALP 969

Query: 889 MAIESIGIHLTGFADRIDLLKSGFVD 914
           +  E     L G+  R+   +   + 
Sbjct: 970 VHFEHAQHRLEGWLGRVFQAQDQSLL 995


>gi|313667279|ref|YP_004049680.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
 gi|313153910|gb|ADR37760.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
          Length = 889

 Score = 98.1 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 115/929 (12%), Positives = 233/929 (25%), Gaps = 114/929 (12%)

Query: 36  YDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL 95
            + L       V     T +A  ELR    E  G+         S  D       A+ L 
Sbjct: 21  LEHLEQHPPQRVAAVTFTNKAAAELRERIFEALGRG--------SFYDFTPSPALAERLA 72

Query: 96  SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155
            Y +    + I         I  +   L  +   +    P    I PA A          
Sbjct: 73  DYQVRVLEAPIGT-------IHSFFGYLLRLTAPMLGLDPHFEVIDPATARAWFLEEVRN 125

Query: 156 IDIIETEEKKWEDLHALKNE----------KYGMWWLLAA-DFLKIASKYWTERLVELNA 204
           + IIE  E       AL             +       +     K     W  RL     
Sbjct: 126 LAIIEGAEVDETVTTALVELFKRRSISEAFEGTGDASRSLVAGFKKVYARWLTRLGGRYL 185

Query: 205 SSPVGYQIALM---RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                 + AL      EA   ++   G +++     + P  AR+   +     G  +   
Sbjct: 186 DPSEIERRALALIRHPEALERVRSRLGVVLVDEYQDTAPIQARVFEALEEA--GVPIEVV 243

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            D       +     +             H +      ++ L +       L +  N   
Sbjct: 244 GDPKQSIYAFRDADVEGF--------REAHRRARENGNVETLTVSYRHPPALADFLNAFT 295

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
                + K+F   +  +++     + ++  I     D           EA  +A  LR  
Sbjct: 296 SAEAALGKAFTAEEAPEVKPGREGDARVELITVTPGDGKATLDALRNGEARLLARELRRL 355

Query: 382 LDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
            DE         ++   R+    +   L   G+   +     L        L   L    
Sbjct: 356 HDEEGYDYGQMLVLFRRRHQLPPLLRALRGAGLPFAVVGLRGLYEEPEVRELYHALRLAT 415

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                 ++A  +  P       +     A++A E                 +  L R+  
Sbjct: 416 GEAPRDSLAVFLSGPFGGLTLGQVREVLAQDAPESYLTLH-------HPEAAERLLRLRA 468

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                      +RL E         +D +   +    T            +  +      
Sbjct: 469 DAEKMRPAEALTRLIEAPTAKGPPFLDLLE--LEMADTVLYVLGRIEHTRTYPEAVATLE 526

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
           +                                                        E  
Sbjct: 527 SFRSGG--------------------------------------------------EEEA 536

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                    + ++    ++ L    +++   +      +   +  +       + L   +
Sbjct: 537 SLARLGGDAVRVMSAHAAKGLQAPVVVIFDADRTFNGNS---DELVIEPRTGRVALNGED 593

Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
            Y   A        G  H +   +L  ++   I S  ++             +   G  +
Sbjct: 594 AYESIAQALKARKEGEDHRLIYVALSRSSERLIVSAAVKEPRKGSWLHHLTEVLNLGSKF 653

Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                 L     +   ++     P++ +  T        + +       R +   D    
Sbjct: 654 EHRNVTLAEIALEEPIEQEAATLPVDPELATPLPPAPPAVSSPTALKAERELEVPDPEEA 713

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-R 857
           +  DP+    G +   ++ E I++  + + PE+   ++   +   E+        +I   
Sbjct: 714 WPADPEARLLGRIVGILVHEGIQRDWDPDDPEVLLALE--GEQVLEEVPADRRPAVIEEV 771

Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
               ++  + L          E     +P    + +      G  DR+  +      + D
Sbjct: 772 ATLLRVYRTLLGSAIPSLEEREVDLAELPLVYPLGATAWE--GVIDRLYRVGD-VWYLED 828

Query: 918 YKTGDNPKKETAQKLIDPQLSLEAAALKA 946
           YKT      E        QL+L   A++ 
Sbjct: 829 YKTDREVHPER----YHSQLALYREAVRK 853


>gi|256374998|ref|YP_003098658.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
 gi|255919301|gb|ACU34812.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
          Length = 1349

 Score = 98.1 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 80/841 (9%), Positives = 187/841 (22%), Gaps = 110/841 (13%)

Query: 46  SVTIYVPTKRAIQELRSEF---IEITGKKSTI----------------LPIIKSLGDVVE 86
            V     T++A ++L       +        +                 P++ +      
Sbjct: 79  RVLGLTFTRKAARQLGERVRGRLRRLAGSPLLDELDPSGRRRAAVLTTEPVVLTYHAYA- 137

Query: 87  EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
                 L+  + L  PV    RLL       +    +    +DL  +   +   S    +
Sbjct: 138 ----GRLVGEHGLRLPVEPGVRLLTETAAWQLAHRVVSAWTQDLDTDKIPTTITS--YLL 191

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---------------WWLLAADFLKIA 191
            LA  L + +   E      E L AL                              L   
Sbjct: 192 SLAGELGEHLVEPEQLLAHAEHLCALIEHAPKAPRQKDALPEKLQEIVDAQRLRVALLPL 251

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLM 246
              +  R                 R    H       +   G +++     +  A   L+
Sbjct: 252 LDAYRARKRRDAVLDFADQMSLAARLATGHPEVVEGERERYGAVLLDEYQDTGHAQRVLL 311

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
             +    +   V    D       W   +  +      +                     
Sbjct: 312 RALFGDGDPMPVTSVGDPAQAIYGWRGASAANLPRFREDFP------------------- 352

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
             D   L            + +    P   + +    +   +          +       
Sbjct: 353 PADKYELLTSFRNPPEVLHLANAVSGPLRAAGLDVAPLRHREGVEPGDVRIGLFPDVRAE 412

Query: 367 EREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
               A ++A   R  +D + +   +A++   R+    +   L   G+ +++     L   
Sbjct: 413 LEWLADTVAEQWRAHVDTSDEPPTAAVLVRRRSDMPAIAAVLRDRGLPVEVVGLGGLLDE 472

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                LTS L  +       A   L+    +++      L+        +A    + S D
Sbjct: 473 PEVRDLTSALRVLVDPLAGTAATRLLTG--SRWRIAAFDLAAMWQRARDLAGAPARKSPD 530

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              L  L             +        +     A                 +      
Sbjct: 531 EDPLSVLADALPGEHSEQAGLADALDDPGDPSAYSAEGYRRIRRLGAELAALRRRLTQPL 590

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
              ++  + T L             R   + + +      ++  +  +          ++
Sbjct: 591 PELVADVERTLLLDIEAVARPGGVGRAHLDAFADVVSDFAAASPAATLPA-------LLD 643

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
           ++       DG          + + ++    ++ L +  + +  + + V+P       +L
Sbjct: 644 YLRTAEHAEDGLAPGEVEVVDNRVQLVTMHSAKGLEWRIVAVPHVVKDVFPGRRKSASWL 703

Query: 665 ----------------SRVMQSDLNLKTAEKYIGQAAHD---------------FEMANG 693
                              ++        E       H                +     
Sbjct: 704 KSVTELPAALRGDAQDLPELRVPGGANRKEVEEALDRHADEFEERRLVEERRLLYVALTR 763

Query: 694 TRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
           + H +             P   S +L  L  +  T                    +    
Sbjct: 764 SEHSLLVSGHWWGETGATPKGPSAFLTELREVVTTAEHPPADVAHWAPAPGPEDENPLAA 823

Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
           +    +    P    +    + + +     D     A      +     +      + GT
Sbjct: 824 KAKTAQWPADPLGSRRDAVSAGAAMVVAALDRLREAAEHEPPGEPDEPDEPAVTAAEAGT 883

Query: 811 L 811
            
Sbjct: 884 A 884



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 85/854 (9%), Positives = 175/854 (20%), Gaps = 43/854 (5%)

Query: 92   DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
            D L        ++  +  +    L  +W+                      A+A+    +
Sbjct: 487  DPLAGTAATRLLTGSRWRIAAFDLAAMWQRARDLAGAPARKSPDEDPLSVLADALPGEHS 546

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
                +     +        A    +        A   +  ++   E + ++  +  +  +
Sbjct: 547  EQAGLADALDDPGDPSAYSAEGYRRIRRLGAELAALRRRLTQPLPELVADVERTLLLDIE 606

Query: 212  IALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR-LMSTVANHPNGAIVLPGLDCHIPTAI 270
                              ++   +  S  AT   L+  +    +    L   +  +    
Sbjct: 607  AVARPGGVGRAHLDAFADVVSDFAAASPAATLPALLDYLRTAEHAEDGLAPGEVEVVDNR 666

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
               +T  S            H    +           + V  L             +   
Sbjct: 667  VQLVTMHSAKGLEWRIVAVPHVVKDVFPGRRKSASWLKSVTELPAALRGDAQDLPELRVP 726

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA-IALRMSLDENKKKS 389
                        D   ++    +       L  A    E ++ ++      +    K  S
Sbjct: 727  GGANRKEVEEALDRHADEFEERRLVEERRLLYVALTRSEHSLLVSGHWWGETGATPKGPS 786

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            A +T  R +    +       +     A  P      ++             D +     
Sbjct: 787  AFLTELREVVTTAEH--PPADVAHWAPAPGPEDENPLAA----KAKTAQWPADPLGSRRD 840

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
                 A          R     E        +   +   ++   D               
Sbjct: 841  AVSAGAAMVVAALDRLREAAEHEPPGEPDEPDEPAVTAAEAGTADAGEEWVPPDDEWLPS 900

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
                                         T  +++    +  +              D  
Sbjct: 901  DEEEPPPPPEGPDGDWAEWTTPDEPWDDGTPPDASEAAATAPEHGPEVELRSSAPAADPT 960

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
             +       E             E GS     +       T +       P     S   
Sbjct: 961  SESGPEAGLESESEPEPEPEPEPEQGSAPTHGSEPGTGPETVIDSESAPHPGAGAVSAAR 1020

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
            +           DT              T           S       E           
Sbjct: 1021 LSAGGGVSATLPDTDTDTDTAIDAALAATPLGFAPEGDSVSPEGADLPEGSPAADPIPAA 1080

Query: 690  MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
                   L+          P  A   L     +      +           W R +D   
Sbjct: 1081 PVVPAADLV-------PADPVPAEPVLPTDPEIVLPTDPEISDPDAADPEGWARDVD--V 1131

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                             P   S S++ +L  DP  +      +L     F  +P    RG
Sbjct: 1132 LLAERAAAMDRRERVLLPEHLSVSQLVELATDPDQLA----RRLRRPLPFPPNPLAR-RG 1186

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            T FH  +             E+     +              +         +       
Sbjct: 1187 TAFHTWLERRFGAVRLLELDELPGAADE------------DAVPDGELGRLQE------A 1228

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
                  +      V +P +  ++  G+ + G  D +     G   + D+KTG  P+ +  
Sbjct: 1229 FLASAWADRTPHAVEVPFEAEVD--GLAVRGRMDAVFADPDGGWTVVDWKTGRVPEADRV 1286

Query: 930  QKLIDPQLSLEAAA 943
               +  QL+    A
Sbjct: 1287 PS-LSVQLAAYRLA 1299


>gi|224372487|ref|YP_002606859.1| hypothetical protein NAMH_0442 [Nautilia profundicola AmH]
 gi|223589596|gb|ACM93332.1| conserved hypothetical protein [Nautilia profundicola AmH]
          Length = 722

 Score = 98.1 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 62/424 (14%), Positives = 147/424 (34%), Gaps = 79/424 (18%)

Query: 607  DIITRLIDG-ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            +I+  L++  + +         + ++G LESR + ++  ++   N+   P  + K+ FL+
Sbjct: 365  EILHFLLERFKNLTFDDVAGGKVTVMGVLESRGMKYEGAVIVDFNDEYVPNVSDKDYFLN 424

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
             +++ +  L T +       + +       + +               SR+L  L +  G
Sbjct: 425  SIIRKNALLPTRKDKESLQKNYYYNILLNAKKVKIAYVKN---EEKEPSRFLYELGLSFG 481

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
             +       R + Y +   K+       + +R         +P   + +++K L+  P  
Sbjct: 482  EN-------RDEYYSEAVYKISKPNFYEYNER-------FEKPEILTPTKLKTLLECPMK 527

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
             Y   +L +      +        G+  HN++ E++K++        N +M++++ +  +
Sbjct: 528  YYFSYVLNIKNDDEKEY------FGSKLHNVLQEVLKQKPRSPEDYYNRIMQKLLSNVSK 581

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI---GIHLTGF 901
            KE     I   W     + +  + + EE      +K++  +     + +       L   
Sbjct: 582  KEYF--EIKSNWDEKIKQFA--YRDFEELS----DKVYTEVS----LPNKKYKNFLLQAR 629

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
            ADRI  + +    I DYKT      +        Q       +             A ++
Sbjct: 630  ADRI--IGNK---IYDYKT----SSKQDYLKDLTQAEFYKYLMPD-----------AEIY 669

Query: 962  YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021
            +  +     I                + ++K L E +  ++     +I+     +     
Sbjct: 670  FWDINTSQLIK--------------VDPAIKKLEEKIDSIE-----YITKRAEEKDKCKY 710

Query: 1022 SEYD 1025
             EY 
Sbjct: 711  CEYK 714


>gi|157375076|ref|YP_001473676.1| exodeoxyribonuclease V, gamma subunit [Shewanella sediminis HAW-EB3]
 gi|157317450|gb|ABV36548.1| exodeoxyribonuclease V, gamma subunit [Shewanella sediminis HAW-EB3]
          Length = 1187

 Score = 98.1 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 110/1013 (10%), Positives = 247/1013 (24%), Gaps = 145/1013 (14%)

Query: 23   PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
             AL      E     P  PLL+    + V +      LR E        + +      L 
Sbjct: 11   EALSAQLATELQTPIPGMPLLMPE-QVLVQSPGMSTWLRLEIARQNKIAAALE---FPLP 66

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL-------PDIIKDLYPESP 135
                 +    LL         +      +L  L+                   +   E+ 
Sbjct: 67   SSFIWQLCHTLLPDVPKENAFTKPSMTWKLMELLPELLQIDEFAPLNNYLNAANCPDEAT 126

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN------EKYGMWWLLAADFLK 189
             +LP  P     L   +ADI D        W              +            L 
Sbjct: 127  EALPEDPLKLFQLCGQIADIFDQYLVYRPDWIAAWEANEPTLPPKDDKLSPAQAWQPILW 186

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMS 247
             A   +    +  +         +L  A  +           + + G +   P T  ++ 
Sbjct: 187  RALIEFNNLRLNKSRYHRANLHQSLFDALDDPDTCLDGLPRRLFVFGISSMAPQTLDVLY 246

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT-----SSNTTYSTHPQYSLAKLLDF 302
             +A   +  ++      H    I +        +           +    +     L + 
Sbjct: 247  HLAKRIDVIMLNLSPCQHYWGDIVDPRLRARMALEYANRNKLEALWEDKLEVGNPLLANN 306

Query: 303  LDIKREDVKRLGNVSNEMYG---------------------RSMVISKSFLPPDTSDMRN 341
              + RE +  +  +  E                        +  ++  S          +
Sbjct: 307  GKMGRELLDLILELPEEHTNFNFECYQDPLESAPQTLLRGVQHDILELSTRNRSLGPDAS 366

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---------KKSALI 392
              +  +    + K    + L    +   E  ++   L   L             K   ++
Sbjct: 367  LYLTLDDRRVLTKADDSLTLRSCHSPLREIETLHDHLLEMLSREPADPSDPLLAKDIVIM 426

Query: 393  TADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
              D          +         I   I+       +   +    +L           I 
Sbjct: 427  LPDVAAYAPYIDAVFSAKQGAHYIPYAIADRGAAQESPLINSFLHILAINQSRFALTDIL 486

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             +++ P     F E            +   G +   D     +  +           +  
Sbjct: 487  GILEVPAVLRRF-ELDDEALSMIRHWLEQAGVRWGRDENSRAAQSMPAFDKNSWAFGIKR 545

Query: 508  WQSRLSEEDKELA-----------VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                 +  D                     + + +  + T    +     N SI +    
Sbjct: 546  LILGYAFSDDAELYHDTLLVEGIEGQSAQALGKLLNFIETLDEYQQQLAQNCSIEERMSQ 605

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                L++    +  +   L  +   + +S L +++ ++G     N     +     +   
Sbjct: 606  LAQLLEDFYEVDDEEQQQL--QAIREAISKLKTELADSGQVTPLNTQVLQNWFNSTLSES 663

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
             V  +     ++     +  R + F  + L G+N+G++P+      F             
Sbjct: 664  RVGQRYLAG-SVNFCTLMPMRSIPFKLVCLVGMNDGIYPRVQHPVGFDLVAQFGPRKGDR 722

Query: 677  AEKYIGQAAHDFEMANGTRHLIYTR--SLRENNIPTIASRWLQRLLV------------- 721
            + +   +      + +    L  +       +N   I S  +  L+              
Sbjct: 723  SRRLDDRYLFLEAILSAREQLYISYIGHSERDNSERIPSMLVSELVEYCQLCYLPEGDLH 782

Query: 722  ------------------LGGTDFFDNLKKR------------GQCYLDW---TRKLDYT 748
                              L          +R             Q Y       R  D +
Sbjct: 783  NPDNEPDIPAIEKAIHKQLLIEQPLQPFDERLYLPDNGDDPQLKQSYSAQWCPARTSDNS 842

Query: 749  TKQPHYKRPKPFPPLEA------QPRTYSFSEIKQLINDPYAVYARRILKLD-------F 795
             + P +  P      E+      +      S + +   +P   +  R LK+D        
Sbjct: 843  AETPRFIEPGQKIEQESLASPCVEENELEVSALIRFFRNPAQYFFNRSLKVDLGLNIQAD 902

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                    +  +R  L  N++   I + +     E+   +K   +     +     +   
Sbjct: 903  DNDEPFSLNALERYKLQANLLDNAISQGLELPGEELLQRLKASGE--LPLKPFDDLLLNQ 960

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-----GIHLTGFAD 903
            + H    +    +  + + Q S++     +P  +   +       + L G  D
Sbjct: 961  YLHDIKPLIGRAIYLQGENQHSLDI---ELPFALGDGTGNTITEPVTLVGRID 1010


>gi|302524415|ref|ZP_07276757.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
 gi|302433310|gb|EFL05126.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
          Length = 1124

 Score = 98.1 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 80/667 (11%), Positives = 180/667 (26%), Gaps = 66/667 (9%)

Query: 46  SVTIYVPTKRAIQELRS--EFIEITGKKSTILPIIKSLGDVV------------EEKFTA 91
            V     T++A ++L             S +L  I   G +                +  
Sbjct: 70  RVLGLTFTRKAARQLGERVRARLRRLAGSGLLERIDPSGALRATVVAGEPTVLTYHAYAG 129

Query: 92  DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
            LL  + L  PV    RLL       +    +     DL  ++    P   A  + LA  
Sbjct: 130 RLLSEHGLRLPVQPGVRLLSETSSWQLAHRVVSTWDNDL--DTDRVPPTVTAQLLALAGE 187

Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLL------------AADF---LKIASKYWT 196
           L + +   E   +  E L  +                       A  F   L    + + 
Sbjct: 188 LGEHLISTEQLGQYTEWLCEIIENAPRAKGQRASLPVKLQEVLAAQRFRLALLPLVEDYH 247

Query: 197 ERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVAN 251
            R     A           +    +       +   G +++     +  A   L+ ++  
Sbjct: 248 RRKRAEGALDFADQMSLAAQLADGYPAVVAGERERYGAVLLDEYQDTGHAQRVLLRSLFG 307

Query: 252 --HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                   V    D       W   +  +    +++       +   A     L   R  
Sbjct: 308 GVDHPPMPVTAVGDPAQAIYGWRGASAANLPRFTTDFPRRGEERLETAHEFGLLTSFRNP 367

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            + L   +                         DI    +P+++     V          
Sbjct: 368 PEILELANAISEPLRQRGLGVERLRARDGAGPADIAVALLPDVRAEREWV---------- 417

Query: 370 EAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
            A ++A       + + K   +A++   R     +  E+   G+ +++     L      
Sbjct: 418 -ADAMAQRWHAEKEASGKPPTAAVLVRRRADMAPIAAEMRMRGLPVEVVGLGGLLDEPEV 476

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
           + L S L  +       A A L+    A++      ++        +     +       
Sbjct: 477 ADLVSTLRVLADPLAGSAAARLLTG--ARWRIAAADVAALWRRANELTSPEPRAKEGEEP 534

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                    A   +    P    R S E       L   +      L             
Sbjct: 535 ELVAERAEQAGLIDAVDEPGAPERYSPEGYRRIRRLGAELTALRRRLDQSLPEL------ 588

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             ++D  +  +  ++++         +L   +    + + +++   T + +  + +++++
Sbjct: 589 --VADVERTMLLDVESLARPGSAGRAHL---DAFAEVVTDYAETAPTATLL--SFVDYLN 641

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                 DG T          + +L    ++ L ++ + +  L   V+P     + +L   
Sbjct: 642 TAAHAEDGLTPGEVQVVPDRVQVLTVHSAKGLEWEVVAVPHLVAEVFPGKRRSSSWLRTS 701

Query: 668 MQSDLNL 674
                +L
Sbjct: 702 TALPAHL 708



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 97/804 (12%), Positives = 195/804 (24%), Gaps = 70/804 (8%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             E L   NA S    Q  L               I +A           +   +A   + 
Sbjct: 368  PEILELANAISEPLRQRGLGVERLRARDGAGPADIAVALLPDVRAEREWVADAMAQRWHA 427

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR--EDVKRL 313
                 G        +                         L  LLD  ++      ++ L
Sbjct: 428  EKEASGKPPTAAVLVRRRADMAPIAAEMRMRGLPV-EVVGLGGLLDEPEVADLVSTLRVL 486

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
             +         ++    +                      +              E+A  
Sbjct: 487  ADPLAGSAAARLLTGARWRIAAADVAALWRRANELTSPEPRAKEGEEPELVAERAEQAGL 546

Query: 374  I------AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST---- 423
            I          R S +  ++   L      L RR+   L     +++ +  + + +    
Sbjct: 547  IDAVDEPGAPERYSPEGYRRIRRLGAELTALRRRLDQSLPELVADVERTMLLDVESLARP 606

Query: 424  -TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             +   + L +    +    +    ATL+              +        V +  ++  
Sbjct: 607  GSAGRAHLDAFAEVVTDYAETAPTATLLS---FVDYLNTAAHAEDGLTPGEVQVVPDRVQ 663

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
               +     +   +    +         R S      +  L  H+      L       +
Sbjct: 664  VLTVHSAKGLEWEVVAVPHLVAEVFPGKRRSSSWLRTSTALPAHLRGDAADLPKL--QIS 721

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                   + +  +L          DE R+L  +      + L        E+ +  K  +
Sbjct: 722  EGYDRKEVQEALELHEEGFVAREADEERRLCYVALTRSERALLVSGHWWNESSTRAKGPS 781

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            I   +I         +         + +             +            +     
Sbjct: 782  IFLTEIAEV------MNEADPPLGVVDVWAEEPEEGDENPLVA----------DSRTAQW 825

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
             +  +      + T  + +       E               +++   +           
Sbjct: 826  PVDPLGDRRSGVATGVELLLAEMAALEEEPEPEPEAEPLPAADDDEIPLPPEPEDDYPPD 885

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
                  D      +    W    D         R +      A P   S S++  L +D 
Sbjct: 886  DEYFEDDEDVIDPEDPDGWAA--DTDVLLAERARSQSTVDRVALPAQLSVSQLVDLASD- 942

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                A  + +    P          RGT FH+ + +                     D  
Sbjct: 943  ----ADALAQRLRRPLPLPPNTFARRGTAFHSWLEQRFS-----------------GDRL 981

Query: 843  FEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
             E ++LP   D+       F  +  +F   E   +     + V +P    IE  GI L G
Sbjct: 982  LEIDDLPGAADVGEAPDTDFEALQEAFENSEWADR---VPLAVEVPFSADIE--GITLRG 1036

Query: 901  FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
              D +     G   + D+KTG  P  E     +  QL     A    +  ++   +V   
Sbjct: 1037 RMDAVYADPDGGWTVVDWKTGSVPS-EERLPALAIQLGAYRLAWA--ALKKVPVERVRAA 1093

Query: 961  F-YIRLKQKFKIDCITNDKKKYSA 983
            F Y+R     +   + + +   S 
Sbjct: 1094 FHYVRHGHTLRPADLLDAEGLRSL 1117


>gi|313115008|ref|ZP_07800501.1| hypothetical protein HMPREF9436_02365 [Faecalibacterium cf.
            prausnitzii KLE1255]
 gi|310622699|gb|EFQ06161.1| hypothetical protein HMPREF9436_02365 [Faecalibacterium cf.
            prausnitzii KLE1255]
          Length = 435

 Score = 98.1 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 103/353 (29%), Gaps = 43/353 (12%)

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            L        T+     +      L   R+++    +           L  +    S S++
Sbjct: 13   LTDTERASLTEVLRLPQTDAPRGLALLRRMEEDPPRQVNDLSALSGLLGQRL-RISPSQL 71

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-------- 827
            ++     Y  + + +L L      + +      GTL H ++   +    + +        
Sbjct: 72   EKYYTCRYGYFLQYVLGLKPRR--RAELSADQSGTLMHWVLQMALDPHPDADNPCAGLAP 129

Query: 828  ----TPEINHLMKQII-DSHFEKENLPPHID-IIWRHLFHKISHSFLEHEEKIQSS--IE 879
                  +    +  ++ D + ++                 K   S L +    Q      
Sbjct: 130  FLELDDDAMAELASLLVDKYAKRYLPEDTARFAYLLSRLKKSMTSLLCYLRDEQKQSCFH 189

Query: 880  KIFVNI---PAKMAIE--------SIGIHLTGFADRID--LLKSGF--VDITDYKTGDNP 924
                 +     + A+            + L G  DR D  + + G   V + DYKTG   
Sbjct: 190  PAACELRIGSGEDAVPGQVYHLSDGRTVQLVGTVDRADEWVEEDGTRWVRVVDYKTGTKK 249

Query: 925  -KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
               +     +D Q+ L   +L      +    + A + Y  L            + +   
Sbjct: 250  LNLKEVYCGLDCQMLLYLFSLTRDKSGRFTGAEPAGVLY--LLADPAPKTTNRQQAQQDV 307

Query: 984  DELSEKSLKNLIEIVTLLQNGEQ------PFISHLRLSEKSNIQSEYDHLARV 1030
                +  +++  ++   +   E        + + +    + + +++   L R+
Sbjct: 308  QYELDGLVRDEQKVFDAMDADETGRYLPFGYRNGVPSPSQKDKRADIAKLNRI 360


>gi|149912864|ref|ZP_01901398.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            AzwK-3b]
 gi|149813270|gb|EDM73096.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            AzwK-3b]
          Length = 1123

 Score = 98.1 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 70/806 (8%), Positives = 188/806 (23%), Gaps = 101/806 (12%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAGSTG 237
            +F ++    +                +   +   +  +              I++  +  
Sbjct: 335  EFARVFLTAYDRAKALRGWLDFDDLILRARQLLTDPAVAAWVLFRLDGGIDHILVDEAQD 394

Query: 238  SIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            + P   +++  +A                +    D       +        +    +   
Sbjct: 395  TSPVQWQVIERLAQEFTSGQGARADVTRTIFVVGDKKQSIYSFQGADPDEFDRMKGDFAT 454

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
              H      + ++ ++        + ++ +  +  S     +      +   +     + 
Sbjct: 455  RLHATGQPLQDME-MEYSFRSSSAILDLVDHTFANSRDSGFTPEQGHKAFKSDLPGRVDL 513

Query: 349  IPNIQKCFSD--------VALIEADNEREE-AISIAIALRMSLDE--------------- 384
             P I+K   D        V +  A++     A  IA+ +R  +D+               
Sbjct: 514  WPVIEKPDQDEDPEWHMPVDVKAANDPATLLARQIALTIRRMVDDKQPIPDKASPSGLRP 573

Query: 385  --NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                    L+     L   +  E     + I  +  + +   L    L +LL+ +    D
Sbjct: 574  IRPGDILILVQRRSTLFHELIRECKTQNLPIAGADRLKVGAELAVKDLAALLSFLATPED 633

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             +++AT ++ PL  +   + +    K   +       ++          VLD +  + + 
Sbjct: 634  DLSLATALRSPLFGWSEAQLFDRAHKR-TQRYLWAALRDRASDFPETMAVLDDLRRKADY 692

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                    R+         LL     +    +        +                   
Sbjct: 693  LRPYDLIERILTRHDGRRKLLARLGAEAEDGIDALLMQAMAYEQR--------------- 737

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                 +      +W E +   +             +  +  + ++    ++     +   
Sbjct: 738  ---AVDSLTGFLVWMETDDLEIKRQMDSAGNRVRVMTVHGAKGLEAPVVILPDTAKRDIR 794

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
             +                              P   + +      +    +     +   
Sbjct: 795  IRDQI---------------------TTSNGTPFWRSASGEAPAAIVRASDAARDAQRAE 833

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
            +    +         +   +  +      A     +  +        +        L   
Sbjct: 834  RDRLLYVAMTRAETWLIVAAAGDLGKNGEAWYEKVQAGLQAAGATAHDFDLGQGLRLQHG 893

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
                  +  P        P      +      +      P  +   + L          +
Sbjct: 894  DWAGTVSDPPADATHSTTPLPAHFQQPAPPPVLPPETLKPSDLGGDKAL---PDERGLDE 950

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                 RG   H ++  L     +        L+           N     +     L   
Sbjct: 951  DAAKRRGRQIHRLLEFLPTVPQSDWPETAGTLL----------SNGSDAAEGEELRLLLA 1000

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIES-IGIHLTGFADRIDLLKSGFVDITDYKT- 920
             +   L                +P   ++++  G  + G  DR+ +     V   D+KT 
Sbjct: 1001 EAEKVLTKPSLQFLFQPDALCEVPVSASLDALGGRRIHGIIDRLLISPD-RVLAVDFKTN 1059

Query: 921  -GDNPKKETAQKLIDPQLSLEAAALK 945
             G     E     +  Q+   A AL 
Sbjct: 1060 AGVPDTAEHVPTALLRQMGAYANALA 1085


>gi|332974541|gb|EGK11461.1| exodeoxyribonuclease V gamma subunit [Kingella kingae ATCC 23330]
          Length = 1146

 Score = 97.7 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 86/742 (11%), Positives = 190/742 (25%), Gaps = 88/742 (11%)

Query: 49  IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
           I V ++   + +   + + +   + +    +    +  +     L  +  L+P  S++ +
Sbjct: 35  ILVQSQGMRRYINQYWAQHSPIAANL--HFELPAQLAWQLMREALPNAPKLSPFSSDVMQ 92

Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-- 166
              L +L           +          +     +A  LA+ LAD+ D        W  
Sbjct: 93  WRLL-QLFQSRHFAEDSELASAQEMLRDYVQQGEMSAYQLARQLADVFDQYLMYRPDWIE 151

Query: 167 --------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS-SPVGYQIALMRA 217
                    +L   ++      W  A          W E L +   +      Q  LM +
Sbjct: 152 AWSNQQNVAELSQREDCAQEQQWQAAI---------WRELLRDEQRAPHRAQMQRVLMDS 202

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW------ 271
            A   ++     I++ G T   P+  +L+  +A   +  I            +       
Sbjct: 203 LANQTIRRLPERILMFGITALAPSHLQLLQEIAKQRDVHIFALNPSAMYWGDLLEPAQIL 262

Query: 272 ---------------------NTITEKSTNITSSNTTYSTHPQYSLAK----LLDF---- 302
                                      +    +       H Q++       LL      
Sbjct: 263 QQTDDVDLSLQGHPLLASWGKQGRDFFNDLSVAEARQDEAHQQFAEQAKSPNLLHSLQYQ 322

Query: 303 -----LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                L  +  D   L      +    +  +          ++     E K        S
Sbjct: 323 IQQLVLPEQAHDDDWLAQHDAYLRESVLQQNLDVGEYYVRHVQQDLSPEQKAMVQLNADS 382

Query: 358 DVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL----TRF 409
            + +  A +   E   +   + ++L +         A++T +          +    +  
Sbjct: 383 SLHIHSAHSPLRELQILKDRILLALAQNPSWQPHDIAVLTPNIEPYAPFIDSVFGEYSDA 442

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLS 465
            +   ++             L   L+ +    +   +  L+              +  L 
Sbjct: 443 PLPYSLADVKLTRKQPALDALAQALDLLNSRFEAEQVLALLNTEPVLQQWHINRADLPLL 502

Query: 466 R-AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS----RLSEEDKELA 520
             A   L +             D  +L   +    +                +       
Sbjct: 503 HSAVAELNIRWGSDASERAQYGDANNLFTWQQGLDRLVLGWLQPAQSGATWQNIAPHASH 562

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
              +  +   +  +      K       S++ W +      Q +  D           + 
Sbjct: 563 PDHLPILANFVAFVRFLSHTKQQWQQPASVAQWCERLQQFTQTLLGDGDTTQQAA--LQT 620

Query: 581 GKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
            +     + +  E        ++      I R +D  T          +     +  R L
Sbjct: 621 WRKALDDWQEQAEIAQFSEPLSSPIACQHIRRSLDEPT--DAGLLRGGITFCSMVPMRSL 678

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
            F  L L GLN+G +P+NT   PF     Q     ++             + +    L  
Sbjct: 679 PFKMLCLLGLNDGTFPRNTKAAPFDLIAKQPRKGDRSRRDDDRYL-FLEAILSAREQLYL 737

Query: 700 TRSLRE--NNIPTIASRWLQRL 719
           +   R+  ++     S  L  L
Sbjct: 738 SYIGRDIRSDAERAPSTLLSEL 759


>gi|160872129|ref|ZP_02062261.1| DNA helicase II [Rickettsiella grylli]
 gi|159120928|gb|EDP46266.1| DNA helicase II [Rickettsiella grylli]
          Length = 722

 Score = 97.7 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 73/702 (10%), Positives = 174/702 (24%), Gaps = 129/702 (18%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLN 100
            L  +     T +A  E+R     +     K+     + +   +           S  L 
Sbjct: 55  SLHHILAVTFTNKAAGEMRQRLENLLDIPMKTMW---VGTFHGLAHRLLRQHWEAS-GLP 110

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
                I           + +  L  +  D    +P  +                 I+  +
Sbjct: 111 QSFQIIDSD----DQYRMIKRILLSLNLDEAQWAPKKVQW--------------FINQQK 152

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
            E      + +   +     +      L    + + E              +       +
Sbjct: 153 DEG-----IRSHHVKNSNDPYTKT---LVRLYQSYEEVCDRNGVIDFAELLLRSYELFIK 204

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           H       +G    I++     +       +  +++  N    +   D       W    
Sbjct: 205 HPEILHYYQGRFQHILVDEFQDTNRIQYAWLKLLSSGKN--YFMIVGDDDQSIYGWRGAR 262

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            K+    + +              +  L+        +   SN +   +           
Sbjct: 263 VKNIYDFTHDFPEHQ---------IIRLEQNYRSTGVILAASNALITHN----------- 302

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--DENKKKSALIT 393
                    L  K+ + +     +AL  A N+ +EA  I   ++  L  + +    A++ 
Sbjct: 303 ------DGRLGKKLWSSRGDGDKIALYGAFNDLDEARFIINQIKQGLKKEVHANDIAILY 356

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R ++  L    I   I  G+            + L  I   ND      ++  P
Sbjct: 357 RSNAQSRVLEEALIHAQIPYRIYGGLRFFERAEIKDALAYLRLIANRNDDPGFERVINTP 416

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G       R +   +                 +L L + AT   N           
Sbjct: 417 TRGIGDQTLQKLRLEARTQ-----------------ALSLWQAATYLLNQ---------- 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                    L       +   +      +      S+++ T+        +         
Sbjct: 450 -------QCLPSRAANALAHFIQLIDKMDEEIKTFSLAEQTEHV------LYQSGLFNHY 496

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCI---KANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
                E G+       ++I         ++        +  +          E+ + + +
Sbjct: 497 KKEKGERGQARIENLEELINATRQFIPEESTLSILSSFLAHVALEAGEHQANEQHACVQL 556

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L F  + L G+ EG++P +              L+ +   +   +    +  
Sbjct: 557 MTLHSAKGLEFPWVFLCGMEEGLFPHH--------------LSHEEPGRLEEERRLCYVG 602

Query: 691 ANGT-RHLIYTRSL----RENNIPTIASRWLQRLLVLGGTDF 727
                R L  + +              SR++  +      + 
Sbjct: 603 MTRAMRKLFLSYAEVRRLHGTESHHRPSRFISEIPKELVEEI 644


>gi|160872666|ref|ZP_02062798.1| UvrD/REP helicase [Rickettsiella grylli]
 gi|159121465|gb|EDP46803.1| UvrD/REP helicase [Rickettsiella grylli]
          Length = 1135

 Score = 97.7 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 89/764 (11%), Positives = 192/764 (25%), Gaps = 84/764 (10%)

Query: 229  PIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
             +++     + P   RL+  +       +G  +    D       +              
Sbjct: 410  HLLVDEFQDTSPLQLRLIEKLITGWEKQDGRTLFLVGDPMQSIYRFRKAEVCLFLEVRQR 469

Query: 286  T--TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
               ++   P            I          +  +   RS  I      P  +   ++ 
Sbjct: 470  GIGSFPLQPLTLRVNFRSTSGIVDWVNHSFSQLLPDNPNRS--IDAIGYSPSDAYTCSSQ 527

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRV 402
              ++     Q     V    A     EA  I   ++    E+     AL+   R+    +
Sbjct: 528  AEKSVFTYWQLAEDSVLGEIA-----EAEQIVTTIQKIKREDPSGSIALLVRSRSHLHPI 582

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
               L +  I         L+       L SL  A+    D ++   L++ P       + 
Sbjct: 583  LPRLRQAKIPYQALEIDSLAEKSALQDLLSLTRALHHFGDSISWLALLRSPYCGLSLRDL 642

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
            Y             +       + + + + L     Q+    VP  +  L ++ +     
Sbjct: 643  YQI----IQWNDKNKKTTIWEQLKEFEKIPLSLKTKQRLRRIVPVLKYSLQQQGRVSFPQ 698

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
             V      +    T    +        + D           +  +          EE   
Sbjct: 699  WVKQTWLYLGGPTTLSHWEE-------MDDIETYFNFLATKLKTEGDSFDFLRIHEELQT 751

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
              +   S        +  +  + ++    ++ G     + E    L  L + +  +L+  
Sbjct: 752  LYTQSTSHDTHAVQIMTLHKAKGLEFDHVILPGLHRSNRPEPYPLL--LYSEQRSVLHQK 809

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR---HLIY 699
              +L  +       +   N  L+   +             +    +     T+   HL  
Sbjct: 810  NFLLAPIPIDPQEPDLIYNYLLAEEQKK--------NQAERIRLLYVACTRTKKSLHLFG 861

Query: 700  TRSLRENNIPTIAS--RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
            T +               L  L  +        L                  K+      
Sbjct: 862  TFTQDSAGKLQSPDKQSLLHHLWPILSIKSEHLLSVSKSRVNQKNSTTQTVLKRLPATWQ 921

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
             P  P+++     +                   +    + +          GT+ H ++ 
Sbjct: 922  SPVSPMKSFEIPTT-------------------MPSQPVVYHWHSHTERIFGTVIHRLLY 962

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-S 876
            ++ +  +     +IN   + ++        L             +     +         
Sbjct: 963  QISQDGLEHWIKKINQS-QTLLAGLLAHYGLLDSEIPNVLITLKRCLEKVIACPRARWIL 1021

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGF-----ADRIDLLK-SGFVDITDYKT----GDNPK- 925
            S +         +      + L G       DR  +   +    I DYKT    G+ P  
Sbjct: 1022 SQQHWMAESEYAIT-----VILHGKCENFIIDRTFIDPATCSRWIIDYKTTNYQGNQPDL 1076

Query: 926  --KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
              KE  Q+  + QL+  A      +F     +K+    Y  L  
Sbjct: 1077 FLKEAKQRHQE-QLNGYA-----RAFLHDKPKKICCGLYFPLTA 1114


>gi|304317473|ref|YP_003852618.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
 gi|302778975|gb|ADL69534.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
          Length = 1053

 Score = 97.7 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 93/296 (31%), Gaps = 39/296 (13%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S S +   +  P+  +   +L L     F +   +   G+L+H ++ +  K  ++    
Sbjct: 751  LSASSLNSYVVCPFKFFIETLLNLHVSDEFIE--SKKSIGSLYHEVLMKYYKDNLD-LYD 807

Query: 830  EINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                 + +IID  FEK          + +      +   L      + L +  K  + + 
Sbjct: 808  VNEDRLGEIIDESFEKITGIENDIIFDKIKQEFYNVVFQLVKDDISNRLYYYNKTGAELI 867

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKS------GFVDITDYKTGDNPKKETAQKLI 933
                    +M     G    G  DRIDL ++      G   I DYK+G         + +
Sbjct: 868  PSIFEKKFEMKDHYGGNIFHGKIDRIDLERNIDGKFTGKYVIYDYKSGGIDGIRQCIEGL 927

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVA--NLFYIRL--------------KQKFKIDCITND 977
            D QL     A++     + +        L Y  +              K  FK +    D
Sbjct: 928  DFQLPTYYMAVENILKEEFNIEYPKCLGLLYYSIEKVKRNGIVLALYKKDLFKGNSGPRD 987

Query: 978  KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR--LSEKSNIQSEYDHLARVA 1031
                +   +    ++   + +  +   +    +       E S+    Y  + R  
Sbjct: 988  VVGENNFNVIIDWIE--KKGIENIDKIKTGIFNLPDECPFENSSFNCAYKSICRYD 1041


>gi|260220810|emb|CBA28747.1| DNA helicase II [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 872

 Score = 97.7 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 66/699 (9%), Positives = 159/699 (22%), Gaps = 97/699 (13%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-- 102
           +     T +A +E+ +    +     +      I +   +      A    +  L     
Sbjct: 121 ILAVTFTNKAAKEMMTRLSAMLPVNVRGMW---IGTFHGLCNRFLRAHFK-NAGLPQAFQ 176

Query: 103 -VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            +    +L  + RL   ++                                   I   + 
Sbjct: 177 ILDTQDQLSAIKRLCKQYKIDDERFPPKQMAW---------------------FIGNCKE 215

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
           E  + +D+ A   +            ++I  + + ++             +       ++
Sbjct: 216 EGLRPKDVVASDPD--------TRKKIEI-YQLYEDQCQREGVVDFGELMLRSFELLRDN 266

Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI------VLPGLDCHIPTAI 270
                  +     I+I     +       +  +A    G        VL   D       
Sbjct: 267 APIREHYQRRFRHILIDEFQDTNKLQYAWIKMIAGVGQGGSDAGAGSVLAVGDDDQSIYA 326

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
           +      +                                        ++       S  
Sbjct: 327 FRGARVGNMTDFVREFAVRQQI--------------------------KLEQNYRSYSNI 360

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKK 388
               +     N+  L   +   Q     V + EA ++  EA  +   ++  + +   + +
Sbjct: 361 LDSANALISHNSRRLGKNLRTDQGAGEPVRVYEAPSDFAEAQWMVDEMKQLIRDDVPRSE 420

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            A++      +R ++  L   GI   +  G+            + L  +   ND  +   
Sbjct: 421 IAVLYRSNAQSRVIETGLFNAGIPYRVYGGLRFFERAEIKHALAYLRLLENPNDDTSFLR 480

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
           +V  P    G       +        +L    ++        +                 
Sbjct: 481 VVNFPARGIGARSIEQLQDLARATGCSLHDAVSTLTGRPGAVIAGFVAKLDVMREQTADL 540

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
             +   +       L++H           +          S     +        +    
Sbjct: 541 NLKDIIKLMLEHSGLLEHYRNEREGEDRVENLDELVNAAESFV-MQEGFGREAPGMAPLV 599

Query: 569 HRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                 L      + LS    +   +               +T                 
Sbjct: 600 SSPEALLSQSPASQGLSGEALETAPDEFGDTGETLSPLQAFLTHAALEAGDNMAAAGQDA 659

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
           + ++    S+ L FD + + G+ E           F      SD +    E+ +   A  
Sbjct: 660 IQLMTVHSSKGLEFDCVFITGMEE---------GLFPHENSMSDHDGLEEERRLAYVA-- 708

Query: 688 FEMANGTRHLIYTRSL----RENNIPTIASRWLQRLLVL 722
             +    + L  + S            + SR+   L   
Sbjct: 709 --ITRARKRLYLSHSQTRMLHGQTRYNLKSRFFDELPEE 745


>gi|251782155|ref|YP_002996457.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
 gi|242390784|dbj|BAH81243.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
          Length = 1210

 Score = 97.7 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 93/834 (11%), Positives = 223/834 (26%), Gaps = 96/834 (11%)

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMS 247
            K + +   +  A          ++   E+       +     +++     +     RL++
Sbjct: 369  KAYLDAKKQEGAFEFSDIAHFAIQILEENPDIRQTYQDQYHEVMVDEYQDNNHMQERLLT 428

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP-QYSLAKLLDFLDIK 306
             ++   NG       D       +     +  N    +    T+P Q  L  L +    +
Sbjct: 429  LLS---NGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDY--QTYPEQGKLILLKENFRSQ 483

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI------QKCFSDVA 360
             E ++    V   +   S+                   + +                 + 
Sbjct: 484  TEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSVGQKIASPEHRAKLLLYNTDHEDQLD 543

Query: 361  LIEADNER-EEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDIS 416
            + +AD+    E   +A  +    +E     +   L+ + R     +     ++GI +   
Sbjct: 544  IEDADDISPSEVTIVAKEIIRLHNEQHVPFEDITLLVSSRTRNDAIFHTFNQYGIPLVAD 603

Query: 417  AGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK---NALE 472
             G      ++   ++   L  I    +  A+  L++ P+  F   E      +   +   
Sbjct: 604  GGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDELTRLALQQGDDKEA 663

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
                   + +         ++ +    K +  +   +S            L+  I     
Sbjct: 664  DCLYDKLERACLGTGTHPELVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFNDRF 723

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN----VCLDEHRKLPNLWFEEEGKT----- 583
                  +   +     ++           Q+    +          L  + +        
Sbjct: 724  YFDFVGSQAKAEQAQANLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVAS 783

Query: 584  ---------------LSSLFSKIIETGSCIKANAIEWIDIITRL-------IDGETVKPK 621
                           L   +  ++          +    I++R        +       +
Sbjct: 784  SKQAVNLMTIHKSKGLEFKYVFLLNCDKRFAMTDVHAPFILSRQQGIGIKYLADVKDVLE 843

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVW-----------------PKNTAKNPFL 664
             +   ++ +        LN   L L  L+E +                    +  K+   
Sbjct: 844  EKTLPSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKQIYLIGKASKEKSQEF 903

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANG----TRHLIYTRSLRENNIPTIASRWLQRLL 720
            +   +S  +L  A +    +  D+ +A         L +     E +  +  +    +  
Sbjct: 904  TDGKRSGNHLPLALRERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHLQSQ 963

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
             L   D   + ++           L+  ++           P    P     +    L +
Sbjct: 964  QLLQPDDLKDNRQSADITRAI-DMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDS 1022

Query: 781  DPYAVYAR--RILKLDFIPHFKKD--PDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
            D   V  +  R L    +P F K    + +  G+  H ++  +   +   +   I   ++
Sbjct: 1023 DGVEVMEKSYRTLNAFTLPEFSKQVKVEASQVGSALHRLMQAIPLTKP-ISLATIAQALE 1081

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM----AIE 892
            +I      K  L       +      +   F       Q+    ++   P  +     + 
Sbjct: 1082 EIEAEAVVKAALDLQKVEQFFTE-TALGKRF-------QTYSTNLYREAPFAILKKDPLS 1133

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
                 + G  D   LL    +++ DYKT         +     QL L A AL  
Sbjct: 1134 QEDYVIRGIIDA-FLLFEDHIELIDYKTDRYRHPSDLKTRYQQQLELYAEALSQ 1186


>gi|260431946|ref|ZP_05785917.1| double-strand break repair helicase AddA [Silicibacter
            lacuscaerulensis ITI-1157]
 gi|260415774|gb|EEX09033.1| double-strand break repair helicase AddA [Silicibacter
            lacuscaerulensis ITI-1157]
          Length = 1119

 Score = 97.7 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 73/808 (9%), Positives = 195/808 (24%), Gaps = 109/808 (13%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHLMKGTKGPIIIAGSTG 237
             F  +    +  R             +          + A   + + G    I++  +  
Sbjct: 337  RFAAVFLPEYERRKQLRGWLDFDDLILRARLLLNDPAVAAWVLYRLDGGIDHILVDEAQD 396

Query: 238  SIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            + P    ++  +A                +    D       +     ++ +   +    
Sbjct: 397  TSPDQWDVVEKLAQEFTSGEGARSGVERTIFVVGDKKQSIYSFQGADPQAFDRMQAEFGR 456

Query: 289  STH----------PQYSLAKLLDFLDIKREDVKRLGNV-----SNEMYGRSMVISKSFLP 333
                          +YS       L +     +   +      S  +  ++ +  +  L 
Sbjct: 457  KLQESGSKLWDWTLEYSFRSSSAILSLVDILFENRADAGFQKESQHLAFKADLPGRVDLW 516

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--------- 384
            P    + +TD  +   P  +       +I A+       ++  A     ++         
Sbjct: 517  PVVEKVEDTDEGDWTDPVDRPAAQHHTVILANQIAARIKAMIDAGETIPEDGPTRGTFVR 576

Query: 385  ----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                      L+    +L   +       G+ I  +  + +   L    L +LL+ +   
Sbjct: 577  RKVRPGDFLILVQRRSDLFAEIIRACKAQGLPIAGADRLKVGAELAVKDLAALLSFLATP 636

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             D +++AT++K PL  +     +    +   E       +           VL+ +  Q 
Sbjct: 637  EDDLSLATVLKSPLFGWSEQMLFDLAHRRQ-ERYLWAALRQRAGDFPETLAVLNDLRGQV 695

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
            +         R+         LL     +    +    +   +                 
Sbjct: 696  DFLRPYDLIERVLTRHDGRRKLLGRLGAEAEDGINALLSQALAYER-------------- 741

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                          +W + +   +    + + +    +  +  + ++    ++     + 
Sbjct: 742  ----SDIPSLTGFLVWMQTDDLEIKRQMTGVGDMIRVMTVHGSKGLEAPIVILPDTGKR- 796

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
            +  + + + +        +  D                        ++          + 
Sbjct: 797  QPPRDAEIMVADGTPLWKVPAD--------------------LSPELVARAREDARQREE 836

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
              +    +         +   +  +       S W Q +    G      +   G   L 
Sbjct: 837  NERLRLLYVALTRAEKWLIVAAAGDLGKDG--SSWYQLVEEAMGRAGATEIPGTGIRRLA 894

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                            P      +   R             P  +   + L         
Sbjct: 895  HGDWEGLPLDHRPTPDPVQDSLPDLFHRPAPEPIPDAETLSPSDLGGAKAL---PGETGL 951

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
            ++     RGT  H ++  L +   ++       L+              P +    R   
Sbjct: 952  EEEAAKLRGTRLHLLLEHLAQAPRDRWDQLCARLL--------------PDMQDGDRRDL 997

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
               +   L   +            +P    ++     + G  DR+ +     V + D+K+
Sbjct: 998  LAEAAGVLTAPDLAPVFAPDALAEVPVSATVDGR--RIHGVIDRLIVTDD-VVQVIDFKS 1054

Query: 921  GDNPKKETA--QKLIDPQLSLEAAALKA 946
                        + +  Q+    AAL  
Sbjct: 1055 NATVPDRAETCPEGLLRQMGAYVAALSQ 1082


>gi|227875827|ref|ZP_03993953.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|227843575|gb|EEJ53758.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243]
          Length = 900

 Score = 97.7 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 86/690 (12%), Positives = 180/690 (26%), Gaps = 69/690 (10%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     + G  +  +  + +          A+             
Sbjct: 104 EILAITFTNKAAGEMRERVETLVGNAAKYM-WVSTFHSSCVRILRAEAETL--------G 154

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           I R   +       +  L  IIK    +     P S A  I  AK           E  +
Sbjct: 155 ITRSFSIYD-TADTKALLTRIIKGRGLDPKRFTPKSFAARISNAK----------NELVE 203

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
                 +            +         + + L   NA         ++     H    
Sbjct: 204 PATFAEMAAPD------KISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRRHPEIL 257

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     + PA  +L+  +A  P G   L G     P A    + +    
Sbjct: 258 AKYRDKFRYVLVDEYQDTNPAQYQLVRLLARDPLGDPRLDGALGAHPGAGLTVVGDS--- 314

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                        Y+        +I+  +    G  +  +              +     
Sbjct: 315 ---------DQSIYAFRGATIR-NIEEFEQDFPGATTVYLEQNYRSTGTILSVANAIISE 364

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNL 398
           N+   +  +           +  AD ER+EA  I   +R +        + A+     + 
Sbjct: 365 NSGRHKKNLWTEAGDGPKAIMFAADTERDEAAFIIREIRDAHTAGTPWDEFAVFYRTNSQ 424

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  LTR  +   +  G             + L A     D   +  ++  P    G
Sbjct: 425 SRALEEMLTRENVPYRVVGGTKFYDRKEIKDAIAYLTAAANPADDGNLLRILNEPKRGLG 484

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
              +   R    L   +    +     +          A                    E
Sbjct: 485 DVAQTKIREAARLSGTSF--GQAMRGFITGGVHEGQLSAKATTALASLVNLLDNLRGLDE 542

Query: 519 LAVLLVDHILQCITPLVTY--KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
               L + +   +            N+   +  I +  +L     +    +   +L +  
Sbjct: 543 AGAPLDEILGTALEDSGYLPKLRASNNPQDDARIENLLELHAVAEEFSLSEPDSRLADFL 602

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                   +             K  A    +       G+   P  E    + ++    +
Sbjct: 603 ERISLVADTDQLPDQGSKEVAAKEMAPREPETNVSEASGDHPNPAPETKPEVTLMTVHTA 662

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F+T+ + G+ +G++P + +              L   E    +    +      R 
Sbjct: 663 KGLEFNTVFVTGMEDGLFPHSRS--------------LDDPEAIEEERRLAYVAVTRARR 708

Query: 697 -LIYTRSLRE----NNIPTIASRWLQRLLV 721
            L  TR+       + +   ASR+L  +  
Sbjct: 709 QLYLTRAAARTVFGDTMNMPASRFLNDIPA 738


>gi|227542073|ref|ZP_03972122.1| RecB family exonuclease [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182124|gb|EEI63096.1| RecB family exonuclease [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 280

 Score = 97.7 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 90/266 (33%), Gaps = 28/266 (10%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S + Q    P +     I K+       +  D   +GTL H ++  L+     + T
Sbjct: 20   ALSPSRVSQYKKCPLSFRFGAIDKIP-----TETKDYQLKGTLVHAVLEHLMGLPPEERT 74

Query: 829  -PEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
             P    L+    +    +     E +P H ++ +      +   +   E       ++  
Sbjct: 75   YPTAVKLIVPTWEKMKAEDPGNAEVVPEHKEMDFFVQARGLIKGYFMMENPQGLETDR-- 132

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
            +       +    + L GF DR+D+   G V I DYKTG  P    A   +  Q+   A 
Sbjct: 133  MEEFVSTTLRD-DVPLRGFIDRVDVNADGMVRIVDYKTGKKPSPRFADDAMA-QMKFYAL 190

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
             +    +  I  +    L Y+ +     +        + + +E + + ++   EI     
Sbjct: 191  -VWWCLYGVIPAQ--LRLMYLAVGDDLTLSP-----DEATLEEFAGELVQTWDEIKHKGA 242

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028
             GE  F        K     +Y  + 
Sbjct: 243  RGE--FEPRTS---KLCGWCDYQSIC 263


>gi|187932856|ref|YP_001884279.1| ATP-dependent nuclease subunit B [Clostridium botulinum B str. Eklund
            17B]
 gi|251764547|sp|B2THC7|ADDB_CLOBB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|187721009|gb|ACD22230.1| ATP-dependent nuclease subunit B [Clostridium botulinum B str. Eklund
            17B]
          Length = 1152

 Score = 97.7 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 90/255 (35%), Gaps = 35/255 (13%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
            ++S S +++    P++ + +  LK         +    D G+  H+I+     K   +  
Sbjct: 773  SFSVSRLEKYAECPFSYFIQYGLKAKNRK--VYEFTPPDLGSFVHDILDSFTNKVKKEKI 830

Query: 829  PEINHLMK-------QIIDSHFEKENLP----PHIDIIWRHLFHKISHSFLE--HEEKIQ 875
               +  M        ++ID+  ++++       +    +   F ++    +    E+  +
Sbjct: 831  AWSDLDMIKCKNIVSELIDTKLKEDSGSILNSTNKYKYFSKRFKRVISKSVSVISEQMRR 890

Query: 876  SSIEKIFVNIPAK---------MAIESIG-IHLTGFADRIDLLK-SGF--VDITDYKTGD 922
               E                  + + S   ++L G  DRID L   G   + I DYKTG+
Sbjct: 891  GEFEVFNNEFSFGSYNDGEAIVLELPSNEKVYLNGRIDRIDTLDLEGSTYLRIVDYKTGN 950

Query: 923  NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
                       +  QL +   A LK   +          + Y R+      D I   K  
Sbjct: 951  KHFDLNEFYYGLQMQLLVYLDALLKNSEYILKKQALPGAVLYFRVD-----DPIIKTKGD 1005

Query: 981  YSADELSEKSLKNLI 995
             + +EL ++ L NL 
Sbjct: 1006 ITTEELEKEVLSNLK 1020


>gi|154244726|ref|YP_001415684.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154158811|gb|ABS66027.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 1143

 Score = 97.7 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 93/909 (10%), Positives = 221/909 (24%), Gaps = 117/909 (12%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             TLV+       + +  A++ +   + RA  EL    I      +  L  I +      +
Sbjct: 228  RTLVKRVLSLLADGIDPAAILVLTFSNRAAGELSERLIAAAPDAAPKL-WIGTFHAFGLD 286

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                       L P  +   R   +A L  I         ++L+   P  +      AI 
Sbjct: 287  -LVRRYHDKLGLTPNPALFDRSDAIAVLEEILPTLPLVHYRNLW--DPAMVLRDIVAAIS 343

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
             AK   D +          + + A   ++           +      + + L +      
Sbjct: 344  RAK---DELADPARYRALAQGMAAEAVDEEARIAAAKCLEIADIYDLYEQALRKHGGVDF 400

Query: 208  VG-----YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                    ++          ++     +++        A+ARL+  VA   +G  +    
Sbjct: 401  GDLIMRPARLLETDEATRIAVQLRHRHVLVDEYQDVNRASARLLKLVAG--DGERLWVVG 458

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            D       +   + ++      +              +D L +      ++      +  
Sbjct: 459  DARQSIYRFRGASSENMVRFGRDYPG---------AAVDQLGVNYRSTDQIVRSFVAVAP 509

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS- 381
            R             +D                  S   +   +   +EA  +A ++R   
Sbjct: 510  RMGASHGMLALALEADR-------------GAAPSRPEICRFETLDDEAAGLAASIRELE 556

Query: 382  -LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                  +  A++         +   L   GI I       L        L  LL+     
Sbjct: 557  GAGVRLRDQAVLCRTNGRLNEIAAALEARGIPILHLG--SLFEREEVRDLLCLLSLAVDP 614

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
                 +                 +SR   ++   AL G   +     L +     +    
Sbjct: 615  FGDAIVRVGAMPRYGLSLQDAYCVSRHLRSIGKPALAGLAEASAAPGLSTAGRAGVERLA 674

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
             +       +   +      +   D        L    +  +S    +      +     
Sbjct: 675  ADLAGLRANASAWDFLATYLLDRTD--------LAKQLSQADSLTAQMRAVAIWQFLNFV 726

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
             + V +     +                            + +  + ++    D   V  
Sbjct: 727  REQVPVGGGLPIQR------------------------TLDRVRQLVLLAEERDLRQVPA 762

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGL-------NEGVWPKNTAKNPFLSRVMQSDLN 673
                   + ++    S+ L F+ + + GL       +         +         S  +
Sbjct: 763  AALHLDAVRLMTVHGSKGLEFEAVHIPGLTVASFPSSNRGQRCPPPRGMVEGAGDLSPAD 822

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNL 731
                     +    F   +  R  +     R   N     AS +L  +      +  +  
Sbjct: 823  EAKRAHDDEEECLFFVALSRARTHLRLYHARKQRNGSGRSASPFLGWIPATLLDEISNPP 882

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                                      +P         + + S +      P   +   +L
Sbjct: 883  ---------------TLPLPAGASTSQPIAIAWPADWSVTDSRLGSYEKCPRRFFYTHVL 927

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQIIDSHFEKENLP 849
             L       + P    R    H+ + +L++   +  +         +   +  +      
Sbjct: 928  GLGG----ARKPTAFSR---THDCLYDLLRWLADTRRTAEPTVADAESAFEKIWGTRGPT 980

Query: 850  PHIDIIWRHLFH-KISHSFLEHEEKIQ-SSIEKIFVNIP-AKMAIESIGIHLTGFADRID 906
             H           ++  + +      +    + + ++ P  ++ +E   +          
Sbjct: 981  DHAFAADYRRLASRLIGALVRSGAGRRFREAQPLAIDFPNGRVVVEPNELA--------- 1031

Query: 907  LLKSGFVDI 915
             L  G V I
Sbjct: 1032 ELPDGTVVI 1040


>gi|298711633|emb|CBJ32689.1| RecB family exonuclease [Ectocarpus siliculosus]
          Length = 337

 Score = 97.7 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 89/314 (28%), Gaps = 62/314 (19%)

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                   R     P+E   R+ S S +      P   Y R IL L   P  +     T +
Sbjct: 16   DVAALGSRKDGSRPVEGMVRSISPSAVAAFQQCPQLFYYRYILGLKSPPTRE-----TLK 70

Query: 809  GTLFHNIITELIK-KRINKNTPEINHLMKQIIDSHFEKENLPPHI-----------DIIW 856
            G   H +++     +  +++   ++ L ++++     ++   P             +  W
Sbjct: 71   GIAVHEVLSLFFTLEEGSRDIGHLHELFRKVMTGLIAQDKEDPSRGYGKLFETQEEEKKW 130

Query: 857  RHLFHKISHSFLEHEEKIQSSIE--KIFVNIPAKMAIESIG------------------- 895
                  +  +F+  E   +   E     V +                             
Sbjct: 131  VVECLDLVANFVRVESDARDDGEGDPEHVELRMTHEFGGGETAAGRHIVEEEGEGGQAGD 190

Query: 896  ----------IHLTGFADRIDLLKSGFVDITDYKTGDNPKKE-------TAQKLIDPQLS 938
                      +++TG  DR+D    G + + DYKTG  P  +               QL 
Sbjct: 191  GVAASNTAWSMNVTGIVDRLDRCPDGTLRVVDYKTGKIPNLKYSEATNQRIMDEKFFQLQ 250

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
            + A  ++      +       +  + LK    +          S +     +   +   V
Sbjct: 251  IYALLVER-----VLGEAPGEMRLVYLKGPASVTRKIEPAALPSVEGELRSTWDEIAGSV 305

Query: 999  TLLQNGEQPFISHL 1012
                +   P  S L
Sbjct: 306  RR--DSFPPRTSRL 317


>gi|256848516|ref|ZP_05553958.1| ATP-dependent nuclease subunit B [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714783|gb|EEU29762.1| ATP-dependent nuclease subunit B [Lactobacillus coleohominis
           101-4-CHN]
          Length = 1253

 Score = 97.7 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 81/824 (9%), Positives = 204/824 (24%), Gaps = 85/824 (10%)

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
            + S   +       D        P +S++   + +A++I               PE  L
Sbjct: 72  QVLSFTRLAWFLLRNDPHYQT---PRISDVGLTMLVAKIIREL------------PEDDL 116

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---GMWWLL-AADFLKI-- 190
            +    A+     ++L   +  ++      +D  A+               ++ FL    
Sbjct: 117 KMFAKEAHRYGFVQDLTAQLIELQNANVDPQDHDAIIERVQKWADEHQERVSSAFLDKMT 176

Query: 191 ----ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG-SIPATARL 245
                   + E L      +       L++         +     +    G       ++
Sbjct: 177 VLFKVYAAFEEGLT--GRLNSCAVYQLLIKRL--FKDDFSHTHFFLNRYNGQFSAMEEQI 232

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           + T+        +   LD       +   T  + N     +    H     A+    + +
Sbjct: 233 VETMIKKAASTTIGLVLDR-----PYRGATLPNPNNLFYQSGMQYHRLAEFAEQQPDVML 287

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
             + V  +  VS+ +              +  +               +    V    A 
Sbjct: 288 VDDQVVTVNRVSDGL-------------VEVEEWMKAQAQFTIPEQQPRTDQGVHFFTAP 334

Query: 366 NEREEAISIAIALRMSLD---ENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPL 421
               E   +A  +R  +       +   ++T   +    +         + I       +
Sbjct: 335 TRVAELQRVAAKIRQLVASGQYRYRDFLILTRHLDGYTTMLKPVFDANEVPIFNDNDRSM 394

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK-NALELVALRGNK 480
           +     ++L ++            +  L+K  L      ++       +   + A+   +
Sbjct: 395 ANHPLVTLLEAIFKIADHYFQLPDVLQLLKTGLVVPQERDEKGRSYYSSQRFMSAVYTTE 454

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ----CITPLVT 536
           N               A  +   HV       +E+ K+        I          L  
Sbjct: 455 NWCLKYGKTGHAWLEQAEWEFTPHVDPQILANNEQLKKREQQQTSQINWVKSVVRNQLAP 514

Query: 537 YKTNKNSTCGNLSISDWT---------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
           +           + +            +  +           +       ++   T+ +L
Sbjct: 515 FIKQLQGASDGQTAAQILYQGLINLGVREQLEQWAKAATKRGQMDLAQQPQQVWNTMVNL 574

Query: 588 FSKIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
             + +             + ++I       T          + +  T   +      + +
Sbjct: 575 LDEYVTVLGNEGTFYLTAFAEVIQVGFQTATYSQIPSTMDQVLVSETGIVQTNQRKVVFM 634

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------KYIGQAAHDFEMANGTRH 696
            G  + V P+       LS   +  L+    +          +   +A  ++      R 
Sbjct: 635 IGATDDVMPEIKISEGLLSDPDKQLLSQGLTDGQFLPVSGMQRIDNEAMLNYLGMLNARE 694

Query: 697 -LIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
            L  +  +  +N   +  S +L  L    G    DN + R         + D+   +P  
Sbjct: 695 QLYLSAPVMGSNEERVTMSPYLVGLATYFGQWDADNNQLRNDLPFAPEPRADFAKLEPFV 754

Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
             P        Q    + +  +       +   R I +              +       
Sbjct: 755 SAPAATLTNYVQVERQAKNAGQT-----VSAGWRNISREMNHERLGWLKSSLNYQNQTTK 809

Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
           +  E+  +      P++        D+ F+   +          
Sbjct: 810 LSPEMAAQLYGHLDPDVLKQATAAGDN-FDWTTVSDDQRHNTLA 852



 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 83/304 (27%), Gaps = 70/304 (23%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S S+++    +PY  + +  L L      +      + GT +H+ +   ++  + +N  +
Sbjct: 854  SISQLQTFYRNPYEYFLKFGLDLQKREELE--ITNANSGTFYHDSLEAFVR-LLKQNQVK 910

Query: 831  INHLMKQIIDSHFEKENLPPHID-------------------IIWRHLF--HKISHSFLE 869
            +  L    +  +  K                            + + +    ++  +  +
Sbjct: 911  LAELADDQLAFYVAKAMDWAFSRQPSVVELAANYERIAYQKHHLEQTVLTMARVLRNQAQ 970

Query: 870  HEEKIQSSIEKIFVNIPAKMA--IESI----------------------------GIHLT 899
            +          +           ++                               ++L 
Sbjct: 971  YSASH-----PVTTEQKFGHVGLLDDRHDSQPSYRALIYETKIRNQKSSQPDLKRKVYLR 1025

Query: 900  GFADRID-LLKSGF--VDITDYKT-GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            G  DR+D +       + + DYK+         A + +D Q+      L+A        R
Sbjct: 1026 GRIDRVDAVRGDQQDYLTVVDYKSANKEFDLVDAYEGLDLQMLTYLNNLQANLDIANPDR 1085

Query: 956  K--VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL---IEIVTLLQNGEQPFIS 1010
            +  +A   Y+ L            K     +  + +    L     ++  +  G     +
Sbjct: 1086 QSAIAGALYLHLFDPHYQYKNIIKKNPEITELQNHEFKGILLNDDAVLRQIDEGLA--AA 1143

Query: 1011 HLRL 1014
                
Sbjct: 1144 KPNP 1147


>gi|306831468|ref|ZP_07464626.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426253|gb|EFM29367.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 771

 Score = 97.7 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 80/694 (11%), Positives = 191/694 (27%), Gaps = 120/694 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R   + +    +  L  I +   +       D       N     
Sbjct: 54  NILAITFTNKAAREMRERAMALNPATADTL--IATFHSMCVRILRRD-ADHIGYNRNFTI 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++                +       +    I  AKN  D++D +  E
Sbjct: 111 VDPGEQRTLMKRILKNLN-----------LDPKKWNERAILGTISNAKN--DLLDEVAYE 157

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            +  +    +                    K + E L    A       +  +R   ++ 
Sbjct: 158 NQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNP 202

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  +  L +     ++ ++    V N    R              
Sbjct: 261 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANAVINNNRNRRPK----------- 304

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
                     K+         +    A +EREEA+ IA  +   + E     K  A++  
Sbjct: 305 ----------KLWTQNADGEQIVYYRARDEREEAVFIASTIDNIVREEGKNFKDFAVLYR 354

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + S LN I    D ++   +V  P 
Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNVIANTADNISYERIVNEP- 413

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                 +       +  ++     +  +  + +          +
Sbjct: 414 ----------------------KRGVGPGTLEKIRDFANMQNMSLLDASANIMLSGVKGK 451

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                       +      L+  + + +       +      T         +       
Sbjct: 452 A--------AQAVWDLANLLMKLRDDLDQMTVTELVEAVLDKTGYLDALRVQNTLESQAR 503

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  T++  F    E     ++   +    +  L           +++ + ++   
Sbjct: 504 IENIEEFLTVTKNFDDNQEDAPEDESGIDKLSRFLNDLALIADTDDGDAETAEVTLMTLH 563

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P + A               +  ++   +    +      
Sbjct: 564 AAKGLEFPIVFLIGMEEGVFPLSRA--------------AEDQDELEEERRLAYVGITRA 609

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723
             L++     TR+L         SR+++ +    
Sbjct: 610 EQLLFVTNANTRTLFGKTSYNRPSRFIREIDDEL 643


>gi|218458526|ref|ZP_03498617.1| hypothetical protein RetlK5_03323 [Rhizobium etli Kim 5]
          Length = 97

 Score = 97.7 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 58/92 (63%)

Query: 5  KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
          +P + TI    PF + +   L +G L   FR++  +PL LA VTIY+PT+RA++ LRS F
Sbjct: 6  QPRILTIPAGLPFLKTLATTLCDGRLTPLFRHNVDDPLSLAGVTIYLPTRRAVRVLRSAF 65

Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLS 96
          +++ G +S ILP+I+ LG+  ++    D +L 
Sbjct: 66 VDLLGGRSAILPVIRPLGETDDDSGYFDEVLP 97


>gi|241661828|ref|YP_002980188.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240863855|gb|ACS61516.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 970

 Score = 97.7 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 95/888 (10%), Positives = 220/888 (24%), Gaps = 166/888 (18%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE----HLMKGTKGPIIIAGSTGS 238
             +   L    +   + L              +               +   ++I      
Sbjct: 177  ASDAQLGKTLRSIQDGLARDQFIDFASMVREVADRSQSAGRVRERLASIRHLLIDEYQDV 236

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
              A   L++ V +      +    D       W      +           +        
Sbjct: 237  SGAQEELVAAVHSLGGS--IFVVGDDDQSIYGWRGAHVANILEFEDRYPNVSRH------ 288

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
                LDI     + +   SN      +   +    P+                  +    
Sbjct: 289  ---VLDINFRSTRAIVETSNAFAAAQLGPQRLPKQPEAYA--------------DQGPRQ 331

Query: 359  VALIEADNEREEAISIAIALRMSLDENKK-------------KSALITADR--------N 397
            + +       EEA  +A  +   +    K               A++             
Sbjct: 332  LLVHHFPTRAEEAEWVADRIATLIGAEYKKRPDDPGRGLTPADFAILMRSTKSPEQDGSP 391

Query: 398  LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
                    L   GI+  +SAG  +        L  + +A+ +      +A  +     + 
Sbjct: 392  RHAAFSDALAMRGIDFTLSAGGSVFDRPAVQALREVFSALEQGTIDRNLADALVTEHIRP 451

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
             +P   +                             + +A      H P   +R     +
Sbjct: 452  AYPHVNVRETY-------------------------NVLAEWGRRIHQPAGSARQRLFPQ 486

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            +L   L++                          +     +     +  D      ++  
Sbjct: 487  DLLFDLLEAFGLA----------------KSDFDEDVMRDIGLFSRMLQDVESVYLSVDS 530

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                + +     ++ + G  +                  + K  + + + + I    + +
Sbjct: 531  TNRFRAVVRFLQQVADKGYDV------------------STKDSVSRPNAVTISTVHQVK 572

Query: 638  LLNFDTLILGGLNEGVWPKNTAK-NPFLSRVMQS-DLNLKTAEKYIGQAAHDFEMANGTR 695
             L F  + +  +  G +P   +  +  L   + +  +        +   A  F  A    
Sbjct: 573  GLEFPVVFVVDVVPGRFPGKQSSFDSLLPANLMASAIAHGAYTNNVFAEARLFYTAMTRA 632

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                  +          S                    R    L+   +     +     
Sbjct: 633  ERFLHVTGAALLPNGKRSNRQSTFAAALKDIELCTDPTRLPEDLNRAPQERDAEEATL-- 690

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                           SFS++K  +N P     R+                   GT+ H  
Sbjct: 691  -------------PTSFSDVKYYLNCPKNYQFRKSYGFSPRVPELFG-----YGTVVHVA 732

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEKENL------PPHIDIIWRHLFHKISHSFLE 869
            I +L +   ++             + H +           P      +    KI+  +++
Sbjct: 733  IEKLHEMFRDRAPTPDEAQAVAEQNFHLKHVAPSRDPETRPGAYEQAKEKARKIAGEYVQ 792

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI----DLLKSGFVDITDYKT---GD 922
                    +++  V +  +  I + G  +TG  D +    D+ +     + D+KT   G 
Sbjct: 793  QYGTD--FVQQRQVEVRFE--IPARGCLITGAIDLLMKCDDVGEIVEAHVLDFKTMEGGK 848

Query: 923  NP--KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
            +P    +   + +  Q+ L A A +                 I L +  +   I  D + 
Sbjct: 849  DPLANAKLDWRELSLQVQLYAKAAREVYSENAATGS------IHLLKDNRRIEIPIDPES 902

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             +A      ++KN+   V  + + + P    +R S +     ++  L 
Sbjct: 903  VNA------AIKNVEWAVQGILDQDFP----MRPSTQKCEACDFHRLC 940


>gi|119503960|ref|ZP_01626041.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2080]
 gi|119459963|gb|EAW41057.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2080]
          Length = 1115

 Score = 97.7 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 79/749 (10%), Positives = 186/749 (24%), Gaps = 55/749 (7%)

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
             I++     +     +L+  +    +   V                +             
Sbjct: 394  HILVDEFQDTSNQQFKLLKKLMRGWHEHNVTGAPPRTAFIVGDGMQSIYGFRYADVGLFL 453

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                +      L+ L++ +    + G V       + V ++ F   + ++          
Sbjct: 454  QAKARGIGGLPLESLELTQNFRSQAGVVD----WVNRVFAQVFPKVNDAERSEVSHTSAV 509

Query: 349  IPNIQKCFSDVALIEADNER--EEAISIAIALRMSLDENKK-KSALITADRNLARRVKLE 405
              N     + V      ++    EA  IA  +            A++   R+ A  +   
Sbjct: 510  PVNAALPGNAVEAHLFPDDAGLAEANWIAGKIGHIYQSEPDATIAVLIRARSHAAPIIAA 569

Query: 406  LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
            L +  +         +  +     L SL   +    D +A   L++ P       E Y  
Sbjct: 570  LQQHDLPFLGRDLEKIQHSASVMDLLSLCRWLSNPADEVAALALLRAPFCGLLLSEIYAL 629

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                          +       L+       A               +E  ++   L + 
Sbjct: 630  ---------IEDQPRPLSLRKILRRASDLLDADAAIRAGSLEAALDWAESRRDRLSLRIW 680

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
                 +        +       +S  D         + V LD       L          
Sbjct: 681  VEQIWLQLQAASTLSMQGRADAMSFFDLLAR--ADAEGVGLDPDWLERALEQRYASHEHG 738

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                ++      +  +  + +      +       +  +   L        +    +   
Sbjct: 739  QFGVEL------MTLHKAKGLQFDYVFMPALHKGTRGNQRELLRW----HFQAREGERSF 788

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLR 704
            L   ++ +    T  N            L+  ++        +      R  +  + + R
Sbjct: 789  LIAADDRLKKAPTLYNYLSW--------LQKGKEAAELRRLLYVGVTRARCRVWLSGAGR 840

Query: 705  EN--NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
             +  +   +        L +       N  +      +  R+   +  QP     +    
Sbjct: 841  VDNTDGSQLTWPGSASPLGILREALSGNAVEHASSITETPREEKDSETQPSLPTCQLLRL 900

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
              A    +   +      +         L L        +      G + H  +  L ++
Sbjct: 901  PLANLVAHKPDDGALASIERQQGIQAEQLALIQHAGHFNE---RTVGVVVHRALELLSQR 957

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
              +    E++  +++ +        L          +   +  + L  E       ++  
Sbjct: 958  --DVLPNEVDTAIRRGLQFGLADAGLYGDSLTESLVVAETMIAATLNDERGRWILSQRSD 1015

Query: 883  VNIPAK-MAIESIGIHLTGFADRIDLLKS-GFVDITDYKTGDNPKKETAQ-------KLI 933
             +     M+    G  +    DR  L    G   + DYKT      ET Q       +  
Sbjct: 1016 AHSELVLMSSGVNGAPVQNIIDRTFLDSETGKRWVIDYKTSRPNPLETEQQFLAREVQHY 1075

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             PQL+   A ++  +F          L++
Sbjct: 1076 APQLTRYRALIE--AFDPAASAVKTALYF 1102


>gi|257466894|ref|ZP_05631205.1| hypothetical protein FgonA2_05600 [Fusobacterium gonidiaformans ATCC
            25563]
 gi|315918041|ref|ZP_07914281.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691916|gb|EFS28751.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 876

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 136/433 (31%), Gaps = 60/433 (13%)

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
            L    +L          I   L++   PK T    FL+ V +  L+ +T E+ I    + 
Sbjct: 473  LRDWHSLMYERKKEKQAIFLDLDDKSLPKLTKTISFLTEVQKQQLDCQTREESILVEKYR 532

Query: 688  FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG----------TDFFDNLKKRGQC 737
            F  A  ++  +     +        S +++  L   G            F  +L++    
Sbjct: 533  FYQAVYSQKRVVFLVQKSEEKNKTLSSFVEEFLWKQGKKIEKSPYSKAFFLQSLRESFSS 592

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI- 796
             + WT++ +        K  +    L+    +    + + L       Y  +IL      
Sbjct: 593  EVSWTKEFEEGKALALKKENE--ELLKDGKLSLGAYDWRDLKTCSKYFYFHKILGNSGRA 650

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKK-----RINKNTPEINHLMKQIIDSHFEKENL--P 849
                        G + H  +  + ++        +     +  + Q ++  F+K++L  P
Sbjct: 651  EELSFGLSPRLLGIVCHRFLERIGREQWKIFLQERQFAISDTTLAQYLEEEFKKDSLKIP 710

Query: 850  PHIDIIWR----HLFHKISHSFLEHEEK--IQSSIEKI----FVNIPAKMAIESIGIHLT 899
            P +    R        K + +FL++ EK     +I +      +        + + +   
Sbjct: 711  PFLKQYLRKIVYPRIIKNTRNFLQNLEKKYRLENISRFQGEKGIEKEGIYRGKELNVSFQ 770

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
            G AD +   + G  +I DYKTG           I+ QL   A       F      +   
Sbjct: 771  GRADLVIEAEQGK-EIIDYKTGKT---------IEDQLDFYA-------FLFYGEEQKVE 813

Query: 960  LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
              Y  L   +        KK+       E+  KN  E      + ++ F           
Sbjct: 814  GRYYNL---WDGMFSQGKKKEELNSACLEEFFKNFEEDSFYHISEKKAF----------C 860

Query: 1020 IQSEYDHLARVAE 1032
                Y  + R  E
Sbjct: 861  TYCPYQKICRREE 873


>gi|329890022|ref|ZP_08268365.1| DNA helicase II [Brevundimonas diminuta ATCC 11568]
 gi|328845323|gb|EGF94887.1| DNA helicase II [Brevundimonas diminuta ATCC 11568]
          Length = 778

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 81/687 (11%), Positives = 184/687 (26%), Gaps = 116/687 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            + +   T +A +E+R     + G  S  L  + +   V  +                  
Sbjct: 75  ELLVVTFTNKAAREMRERIGHLIGPSSEGLRWLGTFHSVAAQI----------------- 117

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D  + L  +   +  I         K+LA +ID  +     
Sbjct: 118 LRRHAELVGLKSSFTILDTDDQERLLKQLLEAANIDTKRFTP--KSLAHMIDHWKNRGWT 175

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + L     E +      A          +  RL  LNA       +  +   ++H    
Sbjct: 176 PDKLPP--GEDFANGKGPAL------YAAYQARLATLNACDFGDLLLHNITILSKHADLA 227

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +  A    +  + +       +   D       W      +  
Sbjct: 228 EEYRRRFRYILVDEYQDTNVAQYLWLRLLTSSTGNVCCV--GDDDQSIYGWRGAEVDNIL 285

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +   +          +  L+      K +   ++ +   +                
Sbjct: 286 RFERDFPGAK---------VIRLERNYRSTKHILGAASALIAANQ--------------- 321

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNL 398
             D L   +         V +    +   EA  IA  +  +  +  N K  A++      
Sbjct: 322 --DRLGKTLWTEDDSGDKVRVRGVWDGEAEARLIADEIETARKQGMNYKDMAVLVRASFQ 379

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            R  +       I   +  G             + L  I   +D +A   +V  P    G
Sbjct: 380 MRAFEERFLMLAIPYVVIGGPRFFERAEIRDAHAYLRLIQSEDDDLAFERIVNVPKRGIG 439

Query: 459 FPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                 +        + A+R  ++     +L++     +A    +         +     
Sbjct: 440 DTSVQKILHIARENGVSAMRAVRHLITTDELQARTRTPLANFVRDLDRWRDLMAMGTSHW 499

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           ++   L+D             + +        ++   +   T                  
Sbjct: 500 QVTETLLDESGYTAMQKADRTSGQTRLDNLKELTQSMQSFETL----------------- 542

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                                      +++ ++ ++D E      + S ++ I+    ++
Sbjct: 543 -------------------------QAYLEHVSLVMDLERRDENADGSGSVQIMTLHGAK 577

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + L G  EGV+P   + +         +  +K  E+    A      A     +
Sbjct: 578 GLEFPLVFLPGWEEGVFPSQRSID---------EKGVKGLEEERRLAYVGVTRAKQDARI 628

Query: 698 IYTRSLRENN--IPTIASRWLQRLLVL 722
            +  +          + SR++  L + 
Sbjct: 629 SFAANRMVYGRWTSQLPSRFVDELPIA 655


>gi|238897280|ref|YP_002922957.1| exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465035|gb|ACQ66809.1| exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 1123

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 86/723 (11%), Positives = 194/723 (26%), Gaps = 68/723 (9%)

Query: 49  IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
           I V +    Q L+ +  +  G  + I      L           +L +    P  S   +
Sbjct: 35  ILVQSPGMAQWLQIQLAQSLGISANIQ---FPLPATFIWDMFTKVLKNI---PKESPFNK 88

Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI---IETEEKK 165
                +L+ +  + L + I        L           LA  +AD+ D      +E   
Sbjct: 89  DAMTWKLMCLLPDLLQNPIFASIK-HYLQDDEDKQKIHQLAIRIADLFDQYLVYRSEWLD 147

Query: 166 -WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV-ELNASSPVGYQIALMRAEAEHL- 222
            WE+     +      W  A          W   +        P  ++  L +   + L 
Sbjct: 148 GWENGKKFDDLNKNQDWQAAL---------WVSLIRYSRQLEQPEWHRARLYQRFIQALN 198

Query: 223 -----MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                       + I G +   P   + +  ++ H +   +      +    I N     
Sbjct: 199 KNDVDSDLLPKRVFIFGISTLPPIYLKGLEALSRHMDIHFMFNNPCRYFWGDIQNYDILA 258

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG---------------NVSNEMYG 322
             NI ++++      +  +  LL        D   L                   N ++ 
Sbjct: 259 KLNIKNTSSDLRNIEEEQINPLLASWGRLGRDHLYLLSQIEGLQEIHAFVDIEPDNLLHA 318

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
               + +      T     ++   NK   +      + +    +++ E   +   L    
Sbjct: 319 LQHDMLEFKNQA-TRHFSESNSHHNKKRLLDINDRSIGVHSCHSQQREVEILQDQLLNLF 377

Query: 383 DEN----KKKSALITADRNLARRVKLELT-----RFGINIDISAGIPLSTTLHSSILTSL 433
            E+     +   ++ AD +        +         +   IS                L
Sbjct: 378 SEDPALTPRDVIVMVADIDNYAPYIQAVFSNASLERYLPFAISDRKMTQVHPVLQTFIKL 437

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-- 489
           L+          +  L++       F   EK LS  +  +E   +R   ++ ++ DL   
Sbjct: 438 LDLPQSRFSSEQVLGLLEISALSQKFEIQEKELSLLREWVEGSGIRWGLDNENVQDLSLP 497

Query: 490 -----SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT-NKNS 543
                +                           + +  L   ++  +  L+   +  +  
Sbjct: 498 ITGQHTWQFGLKRMFLGYAMDSQAGDWEGVLPYDESTGLAAELIGKLARLLMMLSIWRKK 557

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
              +  +S+W  L           E        F    +   ++    +           
Sbjct: 558 LKTSRLLSEWLPLCRDL--FYAFFESNAETESIFILIDQQWQNIIQYGLSAQYANTVPVS 615

Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                +    + + +  +      +     +  R + F  + L G+NEG++P+      F
Sbjct: 616 LIRHDLVTRFENQRISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNEGIYPRILPPLGF 674

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV 721
                +     ++             + +  ++L  +   R   +N     S  +  LL 
Sbjct: 675 DLMAKKRQKGDRSRRDDDRYL-FLEALLSAQQYLYISYIGRSIQDNSQRYPSVLVSELLE 733

Query: 722 LGG 724
             G
Sbjct: 734 YIG 736


>gi|307700275|ref|ZP_07637315.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris
           FB024-16]
 gi|307614486|gb|EFN93715.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris
           FB024-16]
          Length = 900

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 86/690 (12%), Positives = 180/690 (26%), Gaps = 69/690 (10%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     + G  +  +  + +          A+             
Sbjct: 104 EILAITFTNKAAGEMRERVETLVGNAAKYM-WVSTFHSSCVRILRAEAETL--------G 154

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           I R   +       +  L  IIK    +     P S A  I  AK           E  +
Sbjct: 155 ITRSFSIYD-TADTKALLTRIIKGRGLDPKRFTPKSFAARISNAK----------NELVE 203

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
                 +            +         + + L   NA         ++     H    
Sbjct: 204 PATFAEMAAPD------KISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRRHPEIL 257

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     + PA  +L+  +A  P G   L G     P A    + +    
Sbjct: 258 AKYRDKFRYVLVDEYQDTNPAQYQLVRLLARDPLGDPRLDGALGAHPGAGLTVVGDS--- 314

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                        Y+        +I+  +    G  +  +              +     
Sbjct: 315 ---------DQSIYAFRGATIR-NIEEFEQDFPGATTVYLEQNYRSTGTILSVANAIISE 364

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNL 398
           N+   +  +           +  AD ER+EA  I   +R +        + A+     + 
Sbjct: 365 NSGRHKKNLWTEAGDGPKAIMFAADTERDEAAFIIREIRDAHTAGTPWDEFAVFYRTNSQ 424

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  LTR  +   +  G             + L A     D   +  ++  P    G
Sbjct: 425 SRALEEMLTRENVPYRVVGGTKFYDRKEIKDAIAYLTAAANPADDGNLLRILNEPKRGLG 484

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
              +   R    L   +    +     +          A                    E
Sbjct: 485 DVAQTKIREAARLSGTSF--GQAMRGFITGGVHEGQLSAKATTALASLVNLLDNLRGLDE 542

Query: 519 LAVLLVDHILQCITPLVTY--KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
               L + +   +            N+   +  I +  +L     +    +   +L +  
Sbjct: 543 AGAPLDEILGTALEDSGYLPKLRASNNPQDDARIENLLELHAVAEEFSLSEPDSRLADFL 602

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                   +             K  A    +       G+   P  E    + ++    +
Sbjct: 603 ERISLVADTDQLPDQGSKEVAAKEMAPREPETNVSEASGDHPNPAPETKPEVTLMTVHTA 662

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F+T+ + G+ +G++P + +              L   E    +    +      R 
Sbjct: 663 KGLEFNTVFVTGMEDGLFPHSRS--------------LDDPEAIEEERRLAYVAVTRARR 708

Query: 697 -LIYTRSLRE----NNIPTIASRWLQRLLV 721
            L  TR+       + +   ASR+L  +  
Sbjct: 709 QLYLTRAAARTVFGDTMNMPASRFLNDIPA 738


>gi|149375449|ref|ZP_01893219.1| exodeoxyribonuclease V gamma chain [Marinobacter algicola DG893]
 gi|149360154|gb|EDM48608.1| exodeoxyribonuclease V gamma chain [Marinobacter algicola DG893]
          Length = 1198

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 97/935 (10%), Positives = 226/935 (24%), Gaps = 95/935 (10%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG--------KKSTILPI 77
           L   +V   R  PL P  L S T  V +    Q L+    E               I   
Sbjct: 22  LRRAVVWICRQSPLPP--LESETFLVQSNGIAQWLKLALAEDPSEEGADVGVGGLGIAAG 79

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
           +  L            +L+    P  S   +   + RL  +    + D +          
Sbjct: 80  MDFLFPARFIWQAYRAVLTSEGVPEQSPFDKSRLVWRLFRLLPELIADDVFAPLRRFMAG 139

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---GMWWLLAADFLKIASKY 194
                     LA  +AD+ D  +     W       +++            D L+  +  
Sbjct: 140 TDTETRR-YQLAGKIADLFDQYQVFRADWLADWEAGHDRLRMARGEHRDLGDELRWQAVL 198

Query: 195 WTERLVELNASSPVGYQIALMR-------AEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           W   + ++   +         R         A    +     I++ G +         +S
Sbjct: 199 WRRLVADVGELAGTSRSRIHTRFMEQGQTLTAADRPQNLPRRIVVFGVSSLPKQALEALS 258

Query: 248 TVANHPNGAIVLPGLDCHIPTA---------IWNTITEKSTNITSSNTTYSTHPQYSLAK 298
            ++      + +                         +    + +     + H Q++   
Sbjct: 259 ILSRVSQVVLCVHNPSEFYWADIISDRDLLTADRKRGKTHPGLAALTDPDALH-QHANPL 317

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK---- 354
           L  +    R+ ++ L    N    +  V +        +   + +               
Sbjct: 318 LAAWGKQGRDYIRLLDEFDNPEAYQGRVATPEGRIDIFTPHGDPEKPALLHQVQNDIRSL 377

Query: 355 ----------------CFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITA 394
                             + V    A + + E   +   L  +     +   +   ++  
Sbjct: 378 TSQSEMLGQARTLDPFRDNSVVFHNAHSPQREVEILHDQLLAAFNSDPELRPRDVIVMVP 437

Query: 395 DRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
           D +        +       +   I   IS             L +L+           I 
Sbjct: 438 DVDTYAPHIQAVFGRYPSSSLRYIPFTISDQGQRHRQPVLIALDTLMALPESRFGVSEII 497

Query: 448 TLVKHPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIAT 498
           +L++ P  +  F   E  L   +  ++   +R   +S     L       ++     +  
Sbjct: 498 SLLEVPAVRSRFGIVEGDLPLVRQWVDGANIRWGLHSDHRSSLDLPEGLERNTWQAGLRR 557

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLT 557
                           E  E    L   +   +   +   +   +    + + S W    
Sbjct: 558 MLLGYGAGRDDPWQGIEPFEEIGGLQAGVAGNLYRFVDRLEELWHELRSSATPSGWLDRL 617

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
            + L+    +       L      +    L          ++       DI+   ++   
Sbjct: 618 QSILERFFAELSDDDLLLVNRLRRQAEQWLQDCNSAGMEDVELPLNIVRDILLEGLEEGG 677

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
           +  +      +     +  R + F  + L G+N+G +P++     F    +      ++ 
Sbjct: 678 LNQRFLAG-KVNFATLMPMRAIPFRRVCLLGMNDGDYPRSRPPVDFDLMAVDYRPGDRSR 736

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            +          + +    L  +   R   ++     S  + +L      D  D + +  
Sbjct: 737 REDDRYL-FLEALLSAREQLYISWVGRSIRDDSERPPSVLVSQLC-----DHLDAVWQVE 790

Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD- 794
           +     +  L        + R              S    + L       Y    L    
Sbjct: 791 KSDQKTSPALTIKHPLQPFSREYFPAGNRGAGHNGSPDVHEVLATRRLFTYDSEWLSAHQ 850

Query: 795 -----------FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
                            +     D G      +    ++R+     ++  L     +  F
Sbjct: 851 QRETDVVGVELPFLPPAEPLSIADVGAFLKRPVDTFYQRRLQVRFTDVESLDTD--NEAF 908

Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
             + L              +     +   +     
Sbjct: 909 AMDGLHHWRLEDELIRHAVMKSGTEDELHQRLEGA 943


>gi|312864740|ref|ZP_07724971.1| ATP-dependent DNA helicase PcrA [Streptococcus downei F0415]
 gi|311099867|gb|EFQ58080.1| ATP-dependent DNA helicase PcrA [Streptococcus downei F0415]
          Length = 764

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 78/690 (11%), Positives = 199/690 (28%), Gaps = 120/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R     +    +T   +I +   +       +       +     
Sbjct: 54  NILAITFTNKAAREMRER--AMLLNPATEETLIATFHSMCVRILRRE-ADHIGYDRNFTI 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R+I  +             +S      +    I  AKN  D+ID +  E
Sbjct: 111 VDPGEQRTLMKRIIKGFN-----------MDSKKWNERAILGTISNAKN--DLIDEVAYE 157

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
           ++  +    +                    K + E L    A       +  +R    + 
Sbjct: 158 QQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMLTLRLFDSNP 202

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  +  L +     ++ ++   +V N    R              
Sbjct: 261 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANDVINNNRNRRPK----------- 304

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITA 394
                     K+        ++   +A +ER+EA+ +A  +   + EN++     A++  
Sbjct: 305 ----------KLWTQNDEGQEIVYYQAHDERDEAVFVASTIDQEVRENRRDFKDFAVLYR 354

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + S LN I   +D ++   +V  P 
Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNVIANTHDNISYERIVNEPK 414

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G                             L+  +    A+++        ++    
Sbjct: 415 RGVGPGTLE------------------KIRTFALEQNLSLLEASEQIMLSPIKGKA---- 452

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                       +      L+  + + ++      +      T         +       
Sbjct: 453 ---------AQAVWDLANSLLNLRADLDNYSLTELVEAVLDKTGYLEALQVQNTLESQAR 503

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  T++  F +  +     +A   +    +  L           +S+ + ++   
Sbjct: 504 IENIEEFLTVTKNFDENKDDAPEDEAGLDKLSRFLNDLALIADTDDGDVESAEVTLMTLH 563

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ E V+P + A               +  ++   +    +      
Sbjct: 564 AAKGLEFPVVFLIGMEENVFPLSRA--------------AEDPDELEEERRLAYVGITRA 609

Query: 695 RHLIYTRSLREN-----NIPTIASRWLQRL 719
             ++Y  +         +     +R+++ +
Sbjct: 610 EEVLYLTNANSRTLFGKSNYNRPTRFIREI 639


>gi|270157153|ref|ZP_06185810.1| putative ATP-dependent DNA helicase [Legionella longbeachae D-4968]
 gi|289164442|ref|YP_003454580.1| UvrD/REP helicase family protein [Legionella longbeachae NSW150]
 gi|269989178|gb|EEZ95432.1| putative ATP-dependent DNA helicase [Legionella longbeachae D-4968]
 gi|288857615|emb|CBJ11455.1| putative UvrD/REP helicase family protein [Legionella longbeachae
            NSW150]
          Length = 1084

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 99/826 (11%), Positives = 212/826 (25%), Gaps = 126/826 (15%)

Query: 154  DIIDIIETEEKKWEDLHAL-------KNEKYGMWWLLAADFLKIASK---YWTERLVELN 203
            ++++ +       + L AL         +     W +      +      +      E N
Sbjct: 317  ELLNELSEY---PDFLEALIQVSNLPDPQYDPEQWQVLQALFLLLPLLVGHLHVLFSEKN 373

Query: 204  ASSPVGYQIALMRAEAEHL--------MKGTKGPIIIAGSTGSIPATARLMSTV---ANH 252
                       + A  +          +  T   I++     +      L++ +      
Sbjct: 374  EVDFTTISQQALSALGDADNPTDLALYLDNTLHHILVDEFQDTSITQFELLTKLVHGWQE 433

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST--HPQYSLAKLLDFLDIKREDV 310
             +G  +    D       +                 S   HP          L       
Sbjct: 434  GDGKTLFIVGDPMQSIYRFRQAEVGLFFRAKEQGIGSVKLHPL--------ELSCNFRST 485

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
            + + +        +   +  F      +  +     +      K  S +  I+     +E
Sbjct: 486  QTIVD------WVNKHFAHIFPAQIDIESGSVPFHPSVNVIKDKENSTIYAIKFKTREQE 539

Query: 371  AI-SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
            A   I           +K  A++   R     +   L +  I    +    L+   H   
Sbjct: 540  AQKLIEAVQHELQAYPQKNIAILVRSRTQLSAIIRLLRQHQIPYQGTDITLLTHLSHLRD 599

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
            + SL  A+    + ++   +++ P       + +     N  + +               
Sbjct: 600  VWSLTQALLTPANRLSWLAVLRSPYCGLSLSDIHAIARFNTKKSIYF------------- 646

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
                             +    +SEE    A  L+  + Q    L      + S+    +
Sbjct: 647  ------------ALLNLNQIQGISEEGIIRARFLIHVMHQA---LTQRYETQLSSWVIHT 691

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
            +       +     +   E        +E++G+                        D+ 
Sbjct: 692  LKKLHIENILNESQLNDLEQYWTLLDRYEQDGR----------------------LPDMK 729

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
              L++   +  +   SS L ++   +S+ L FDT+IL GL       +     +L+   Q
Sbjct: 730  EFLMELNKLYSQQTNSSRLHVMTIHKSKGLEFDTVILPGLGAQANHGDKPMLRWLNLPTQ 789

Query: 670  SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
            +  NL        QAAH     +   +   T  L E        R L   +    +  + 
Sbjct: 790  NHGNLLLM--SPIQAAH---QEHCALYDYLT-QLDEIKSRYETQRLLYVAVTRAKSRLYL 843

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                       +   L            +  P   A+  T S     +L+  P   Y   
Sbjct: 844  MDYSEKSSKSSFRSLLKQQEFI------EVDPAYPAEEGTLS---FPKLLRLPLNFYLTP 894

Query: 790  ILKL----DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
               +                   G + H ++  +          E+   + +       K
Sbjct: 895  KPDVFFNNKTSTTSLTTSIPRLIGIITHRLLHWICNNHPE-TIAEVPWGLPRY---ELRK 950

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
                  + +              E         +        ++ ++   I +T   DR 
Sbjct: 951  LGFDEKMQLDALQTIQNQITKLFEDPTGSWIIAKHHQELNEYELLVKQKNIPITRIIDRT 1010

Query: 906  DLLKSGFVDITDYKTGD---NPKKETAQKLID--------PQLSLE 940
               + G   + D+KTG        +  Q+L +         QL + 
Sbjct: 1011 FEDQ-GKCWVIDFKTGKEDEASLLKHQQQLNEYGSYLSSRSQLPIY 1055


>gi|288905388|ref|YP_003430610.1| ATP-dependent DNA helicase (DNA helicase II) [Streptococcus
           gallolyticus UCN34]
 gi|325978377|ref|YP_004288093.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732114|emb|CBI13679.1| Putative ATP-dependent DNA helicase (DNA helicase II)
           [Streptococcus gallolyticus UCN34]
 gi|325178305|emb|CBZ48349.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 771

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 80/694 (11%), Positives = 191/694 (27%), Gaps = 120/694 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R   + +    +  L  I +   +       D       N     
Sbjct: 54  NILAITFTNKAAREMRERAMALNPATADTL--IATFHSMCVRILRRD-ADHIGYNRNFTI 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++                +       +    I  AKN  D++D +  E
Sbjct: 111 VDPGEQRTLMKRILKNLN-----------LDPKKWNERAILGTISNAKN--DLLDEVAYE 157

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            +  +    +                    K + E L    A       +  +R   ++ 
Sbjct: 158 NQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNP 202

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  +  L +     ++ ++    V N    R              
Sbjct: 261 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANAVINNNRNRRPK----------- 304

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
                     K+         +    A +EREEA+ IA  +   + E     K  A++  
Sbjct: 305 ----------KLWTQNADGEQIVYYRARDEREEAVFIASTIDNIVREEGKNFKDFAVLYR 354

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + S LN I    D ++   +V  P 
Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNVIANTADNISYERIVNEP- 413

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                 +       +  ++     +  +  + +          +
Sbjct: 414 ----------------------KRGVGPGTLEKIRDFANMQNMSLLDASANIMLSGVKGK 451

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                       +      L+  + + +       +      T         +       
Sbjct: 452 A--------AQAVWDLANLLMKLRDDLDQMTVTELVEAVLDKTGYLDALRVQNTLESQAR 503

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  T++  F    E     ++   +    +  L           +++ + ++   
Sbjct: 504 IENIEEFLTVTKNFDDNQEDAPEDESGIDKLSRFLNDLALIADTDDGDAETAEVTLMTLH 563

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P + A               +  ++   +    +      
Sbjct: 564 AAKGLEFPIVFLIGMEEGVFPLSRA--------------AEDQDELEEERRLAYVGITRA 609

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723
             L++     TR+L         SR+++ +    
Sbjct: 610 EQLLFVTNANTRTLFGKTSYNRPSRFIREIDDEL 643


>gi|317405925|gb|EFV86204.1| nuclease/helicase [Achromobacter xylosoxidans C54]
          Length = 1190

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 90/803 (11%), Positives = 189/803 (23%), Gaps = 75/803 (9%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239
            L +A      R  +      +        A                +   ++I     + 
Sbjct: 355  LALAVAQLRLRFADTGEVDFIEISQRAAAALGSADDPGELLLKLDASIRHLLIDEFQDTS 414

Query: 240  PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
                 L+ T+       +G  +    D       +           +         Q   
Sbjct: 415  QTQLDLLKTLTSGWQAGDGRTLFLVGDPMQSIYRFRKAEVGLFLEVAQRGVGE--LQPGF 472

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              L D    +   V  +     ++  +    +   +    S   +  + +  +       
Sbjct: 473  LNLTDNFRSQAGIVDWVNESFAQLLPKRSDAAAGAIKYSPSSAFHEALPDPAVRFHPAWS 532

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
                +   +     A+ +          +K   A++   R+    +   L + GI     
Sbjct: 533  RGGGVPAEEQAENIAVGLVRQALADHAGSKHPVAILVRARSHLGNLTRRLAQEGIRCRAV 592

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS----------- 465
              +PL+     + L  L+ A+    D +A  ++++ P                       
Sbjct: 593  DLVPLALRPVVADLVQLVRALSHPGDRLAWLSVLRAPFCGLTLESLQRLFGADHVTPVPV 652

Query: 466  -------------------RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                               RA +A    A R      D  +     L   A        P
Sbjct: 653  LLERLLRPAPARPADAPPVRAVSATVPAASRQGSLFDDTENPAQGALFDDAASPTPPGDP 712

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
               +R +               + +     Y   +      L   + +           L
Sbjct: 713  AGTTRQTGAALPPDDAGARLSAEALLHPDEYARLRQVAAVLLDSRNASGAMPFAAWIETL 772

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                  P L+        +    +++E  +     AI+   +   +          ++ +
Sbjct: 773  WRRLGGPALYSGPSVANDAESLFQLVERLA--PHGAIDPAALDAGIARLFAAPDAADEEA 830

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG---Q 683
             + I+   +S+ L F+T+IL GL+            F     +                 
Sbjct: 831  AVEIMTMHKSKGLQFETVILYGLHRAPRGDQPPLVRFEQSGGRVLFGPVKPRAETEADPV 890

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            + +              R L            L   + + G                   
Sbjct: 891  SRYLGAREARRASYEIDRLLYVAATRARKRLHLVGHVAIDGATGQAKTPSSASLLGRLWP 950

Query: 744  KLDYTTKQP------------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
             L                      + +P   +          +    I+  +A  AR   
Sbjct: 951  CLTTPMPPATDGDSAEPRDDGPEWQGEPLRRVHRDGLAQLARQADVAISPGFAAAARGAW 1010

Query: 792  KLDFIPHFKKDPDR--TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
                     +         GTL H  +  + +  I     E        +     +  +P
Sbjct: 1011 GDSAEHPAWQLESGYDAAIGTLAHAWLARIGQDGIAAWPAEALAHRLPAMRRQLTRAGIP 1070

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKI----QSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
                            S L  +  +    QS   + +  I A   +  I + L+      
Sbjct: 1071 ASQADTAAEAVLDTLQSTLADDRGLWLLSQSGARREWPLIDAAGKVSVIDLALS------ 1124

Query: 906  DLLKSGFVDITDYKTGDNPKKET 928
               + G   I DYKTG     E+
Sbjct: 1125 --TEDG-WLIVDYKTGRPQPNES 1144


>gi|291301936|ref|YP_003513214.1| RecB family exonuclease-like protein [Stackebrandtia nassauensis DSM
            44728]
 gi|290571156|gb|ADD44121.1| RecB family exonuclease-like protein [Stackebrandtia nassauensis DSM
            44728]
          Length = 267

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 81/239 (33%), Gaps = 18/239 (7%)

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
             P T S S      + P     R I KL              +GTL H+++  L      
Sbjct: 7    APVTLSPSRANDFKSCPLKYRYRVIDKLPEP-----TSSAQVKGTLVHSVLERLYDLGAA 61

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHI----DIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
            + T      + +         +         +  W     K+  ++   E+  +  ++  
Sbjct: 62   ERTSGRALELVEPEWKRLRDADAEAAGVVDDESAWIAEVRKLVEAYFAVEDPRR--LQPA 119

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
                  +      G+ L G+ DR+D+  +G + + DYKTG  P++    + +  QL   A
Sbjct: 120  ERECLVEATTAD-GVRLKGYIDRLDVAPTGEIRVVDYKTGGVPREAFRAEAL-FQLKFYA 177

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
             AL       +       L  I LK    ID    + +  + +       + + E VT 
Sbjct: 178  VALWH-----VRGVVPTVLRLIYLKDGQAIDYSPTEAELRATERNITALWRAIGEAVTR 231


>gi|257064330|ref|YP_003144002.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM
           20476]
 gi|256791983|gb|ACV22653.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM
           20476]
          Length = 772

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 78/689 (11%), Positives = 178/689 (25%), Gaps = 98/689 (14%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+R     + G  +  +  + +   +       D                 
Sbjct: 57  ITFTNKAANEMRERLGRLVGPSARGM-WVSTFHSMCVRILRVD----------------- 98

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            EL      +     D  K L  +    L + P    W   ++   I   + E K     
Sbjct: 99  CELLGFSKSFTIYDDDDTKRLLKDVMAGLDLDPKR--WPVNSIRGKISQAKNELKAPGVY 156

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI---ALMRAEAEHLMK-- 224
                +                   + ERL   NA       +    L +   + L    
Sbjct: 157 ADEARDPVS-------KVTARVYAVYQERLKMANAFDFDDLLMYTYLLFKNHPDVLEAYQ 209

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                +++     +  A   +   +A      +V+   D       W     ++      
Sbjct: 210 DRFRYLLVDEYQDTNHAQYAITKLLAAKHQNIMVV--GDDDQSIYSWRGADIRNILEFE- 266

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                 +PQ    KL          +     V      R                     
Sbjct: 267 ----QDYPQARSIKLEQNYRSSGNILNAANAVVAHNTKRKQK------------------ 304

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRV 402
              ++         + +  A +ER+E   IA  +    +E  + ++ A+       +R +
Sbjct: 305 ---RLFTESGDGEKILVYMASDERDEGRWIAGEIDKLHNEGVSYEEMAVFYRTNAQSRSL 361

Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
           +  L R G+   I  G           + + L       D MA   ++  P    G    
Sbjct: 362 EDMLLRAGVPYRIVGGTKFFDRAEIRDVIAYLTLCINPADDMAAKRVINQPRRGIGKTTI 421

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                      +                     +A +       +          + A  
Sbjct: 422 EHIENVARNSNLTFM------------QAAEWCLADETLQMRTRNAIGGFVGLIND-AQS 468

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
               + + I  ++       +     +  D  +  +  ++         + +   +E   
Sbjct: 469 YGGELRKVIEAVIDRSQLIQALEQERT--DEAESRIENIKEFLSVVDEYVESHEIDES-A 525

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
                 + + +T      +  ++++ +        +    +    + ++    S+ L FD
Sbjct: 526 LPPEGINLLADTRQLSPDSLEDFLEWVR---LRTDLDAATDDDQFVTLMTVHSSKGLEFD 582

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
            + + G+ E ++P + +           D      E+ +   A    +    + L  T +
Sbjct: 583 CVFVAGMEETLFPHSNSS---------RDPQGLEEERRLAYVA----ITRARKRLYLTCA 629

Query: 703 -LRENNIPTIA---SRWLQRLLVLGGTDF 727
             R+    T A   SR++  +        
Sbjct: 630 YARQIFGETHANPVSRFVGEIPSELRKSA 658


>gi|257056217|ref|YP_003134049.1| RecB family exonuclease [Saccharomonospora viridis DSM 43017]
 gi|256586089|gb|ACU97222.1| RecB family exonuclease [Saccharomonospora viridis DSM 43017]
          Length = 333

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 91/293 (31%), Gaps = 30/293 (10%)

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
           L R+  +     +  L +               +               A+    S S  
Sbjct: 9   LPRVEPVVPPTAWLFLSRDAATLPGMAN----GSTTTDTANAATPTQQTARRPALSPSRA 64

Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
                 P     R + +L   P          RGTL H+++  L        TPE    +
Sbjct: 65  SDFKQCPLLYRFRAVDRLPEPPT-----KAQVRGTLVHSVLERLFGLPRADRTPERAREL 119

Query: 836 KQ-----------IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            +                F +EN    ++  W     K+  S+ + E+  +         
Sbjct: 120 LRPTWSQLSEECPEWMELFSEENFDKELNQ-WLTSAEKLLDSYFKLEDPRRLD--PEACE 176

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
           +  +  + S G+ L G+ DR+D+  +G + + DYKTG  P +E  +     Q+   A  L
Sbjct: 177 LHVETEL-SSGVLLRGYIDRVDVAPTGEIRVVDYKTGAAP-REIGEAKAMFQMKFYAVVL 234

Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
                  +       L  + L     +    ++ +    +   E   + ++  
Sbjct: 235 WR-----LRGIVPRQLKLMYLSDGQALAYTPDEPELARFERTLEAIWQAILRA 282


>gi|227497414|ref|ZP_03927646.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833090|gb|EEH65473.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434]
          Length = 1152

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 101/1018 (9%), Positives = 249/1018 (24%), Gaps = 146/1018 (14%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGKKST----------ILPIIKSLGDVVEEKFTADLL 94
              V     T++A  EL           +           + P I +             L
Sbjct: 75   GEVLGLTFTRKAAAELAQRISVRLDALAGSGLIERDEEGLDPTIATYNSFAGTIVRDHGL 134

Query: 95   LSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL 152
                      ++  +    ++ ++   R  LP        E  L+L  +    +      
Sbjct: 135  RIGVDPDATLITEARAWQVVSAIVERRRQPLPLESPARVTELVLALDGALCENLLEVDQA 194

Query: 153  ADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
             + +  +++  +    +  LK   K     +     L    + + +        +     
Sbjct: 195  REQLGELDSFFESLATVRGLKTAVKGFDTAMKTRLALLDLVQEYRDVKRSQGMLTFGDQI 254

Query: 212  IALMR-------AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                R        E    ++     +++     +  A  RL++ +        V    D 
Sbjct: 255  ALAYRVVSAPGSQEVVAALREQYRGVLLDEFQDTSTAQVRLLARLFADSG---VTAVGDP 311

Query: 265  HIPTAIWNTITEKSTNITSSNT-TYSTHPQYSLAKLLDFLDIKR--EDVKRLGNVSNEMY 321
            +     W   +  + +              +  A  L  + +       +    V     
Sbjct: 312  NQAIYGWRGASAAALDEFHRAFNPAGCQAVHRGADPLTTIPVLPLSTAWRNDSRVLEAAN 371

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA--DNEREEAISIAIALR 379
              S  +      P  +      + +      Q   ++ A++ A   +  +EA  +A  L 
Sbjct: 372  ALSAPLRHHTPAPGDAPAPRVPVEQLHARPRQAGLAEGAVLGAYLADPLQEAEVVASFLA 431

Query: 380  MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               +   +  A+++  R+    V   L    +  +I     + T    + + +LL     
Sbjct: 432  DRWNPQAQ-LAVLSRTRDSLLPVAEALRARSLPYEIVGIGGMLTIPEVADVRALLTVAAN 490

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                  +  L+              + A+  +   +              S+     A  
Sbjct: 491  PERGDWLVRLLTAGGIGAADLAALYAHARRQMRGTSPFQPPADKSSQGASSVAQIPDAEP 550

Query: 500  KNN------THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
             +         V     R  +    + V  +      +   +  +  +      L ++D 
Sbjct: 551  DSPMLAEAIEAVARSADRHPDGLAGVRVPGLSPAATRLADRLARQLRRVRRAMRLPLADL 610

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
              L   CL        R    +                 +  S    + +EW+D      
Sbjct: 611  VTLAEQCLDLDIEVAARVDDRIGRRGLDGLREVAEQFTRDLDSASLPSFLEWLDAAEAHE 670

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK------------- 660
               +      +   + ++    S+ L +D + + G+NE  +P  + +             
Sbjct: 671  RALSAPEVEPEPGAVQLMTIHASKGLEWDHVAVIGMNEKGFPLYSTQPREDLSVRSKSWM 730

Query: 661  ---NPFLSRVMQSDLNLKT----------------------------AEKYIGQAAHDFE 689
               + F   +      L                                    +    + 
Sbjct: 731  GSADEFPHPLRMDAATLPPFTLGVLEPPEVDKDEVKDLLDQYCLALGRYGVSEERRLAYV 790

Query: 690  MANGTRHLIY---TRSLRENNIPTIASRWLQRLL-------------------------- 720
                 RH +    +   + +  P   SR+L  L                           
Sbjct: 791  ALTRARHDVLLTGSHLSKSSTTPRPMSRFLAELRRRDLVQPYGPGWVDFDPEHGNGLVTR 850

Query: 721  -----VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
                         D  + R    L   +  +   +       +     E        +  
Sbjct: 851  RARVLWPVQPGAADEAEDRDGVALARQQAAEEVAQACQDASVRLRHESEHSEGDQQAAPE 910

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
             ++  +P  + AR   +   +   ++      R       +       +  +  E+   +
Sbjct: 911  AEVDGEPSTLVARWCEEARVLLAEREQEASAPRQLHLPAHLAATQLDALRTDPEELALHL 970

Query: 836  KQII---------------DSHFEKENLPPHIDIIWRHLF--------HKISHSFLEH-- 870
            ++ +               DS  ++ +    +  +              +    +L    
Sbjct: 971  RRPLPSRPSASARLGTVFHDSVTQRLSPHSALFSLEEAGVPDTVSAQDRQTLERWLATAQ 1030

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS------GFVDITDYKTGD 922
            +  +          +  +M I   G+ L    D +   +           I D+KTG 
Sbjct: 1031 DLDLLQGYLLHDTEVEREMTI--SGVTLRCRIDAVFRREGSGEDEPAAWLIVDWKTGR 1086


>gi|225174502|ref|ZP_03728501.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
 gi|225170287|gb|EEG79082.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
          Length = 1069

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 118/951 (12%), Positives = 238/951 (25%), Gaps = 166/951 (17%)

Query: 63   EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN- 121
            E    +       P  KSL D+           +  LNPP     +L  L R  L WR  
Sbjct: 186  ELATTSASYPDFAPARKSLNDL-----LLLAETALPLNPPDGGWDQLQRLLRQALRWRRF 240

Query: 122  -KLPDIIKDLYPESPLSLPISPANAIWLAKNLA----DIIDIIETEEKKWEDLHALKNEK 176
              L D    +   S L+         WL K  A       D     + +           
Sbjct: 241  FDLSDDRNLIRLLSKLNKKKKVVQKKWLTKETAKQIQAFFDHFRESDIQPT--------- 291

Query: 177  YGMWWL----LAADFLKIASKYW---TERLVELNASSPVGYQIALMRA--EAEHLMKGTK 227
               WW        +FL  A  ++    +R  ++N    +    AL++   E     +   
Sbjct: 292  LRQWWEYRYPHLLEFLLPAVAHFQTVRQRENQVNFQDLLMRTAALLKNNSEVRGYFQNRY 351

Query: 228  GPIIIAGSTGSIPATARLMSTVAN-----------HPNGAIVLPGLDCHIPTAIWNTITE 276
              +++     + P  A +M  +              P    +    D       +     
Sbjct: 352  THLLVDEFQDTDPIQAEIMMFLTGCDLTETDWTKISPKPGALFVVGDPKQSIYRFRRADI 411

Query: 277  KSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
             + N        +      L      L +I         ++  +        +    P  
Sbjct: 412  DTYNRVKDLIKKANGEVLHLTANFRSLTEIIDWVNPVFDDLLTQSVAPYQADAVPMQPVR 471

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREE-AISIAIALRMSLD----------- 383
             +   NT  +             +   + +    E A  IA  +R  LD           
Sbjct: 472  KNHPDNTGGIFKI------EIPGITYHKQETIVSEDAARIAAWIRTCLDGNVTLTRTAEE 525

Query: 384  --------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                     +     ++   ++        L  + I   +S    ++ +     L  LL 
Sbjct: 526  EQAGLSATPSPNDFLILVRYKDYMSLYARALEEYNIPFSLSGASDIAASRELQELHLLLQ 585

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            A+   ++ + +   ++         + Y  +  N    +                     
Sbjct: 586  ALADPDNPVPLVATLRGLFFGVSDEDLYRLKKANGRFCLLSPIPD--------------- 630

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                                         D  ++   P+        +    L  S   +
Sbjct: 631  -----------------------------DPTVESFIPIWEKLQQYRAWTRELPPSSAIE 661

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
              ++ L  +       +         + L  + S+     +   A      +++   ++ 
Sbjct: 662  NIISDLGLIPYALAGSMGKGRTGYILQLLELIRSREQNGQTTFPATVDFISELLEAGMEE 721

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILG----------------------GLNEGV 653
            E +  +   +  + I+   +++ L    + L                       G  +  
Sbjct: 722  E-LDVEAGIAPAVRIMNLHKAKGLEAPVVFLANPGKTVTREPNLHVSRTSGTPKGYLQIS 780

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
              +N A   F           +       + A    +A      I   S           
Sbjct: 781  KRENYASEIFAQPTNWEVHQAEETLYQQAEEARLLYVAATRAKNILIISTYPAKADKSPW 840

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
              L+  +    T     ++   +         +         +      +       + +
Sbjct: 841  HPLEEFMESIPTLDIPQVQLPAKEEPQTQITPETLQAVNQQIQENIARVITPTYTRCTVT 900

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            ++ +    P   +  R +                 G + HN +  L+K         I  
Sbjct: 901  DLTKDAQAPERRHTGRGM---------------SWGNVIHNALEALVKYENIDLEALIPQ 945

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
            L++Q   +  EKE +   +  I    F            +   S  +    IP  +    
Sbjct: 946  LLQQEGRAEDEKEEVLTLLQEITETPF-----------WQRVQSASEKHTEIPFGIY--E 992

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL---IDPQLSLEA 941
               +LTG  D       G   + DYKT         Q+L     PQL   A
Sbjct: 993  NDHYLTGTIDLAFREAEG-WVLVDYKTDTVRDDVHRQELVNYYTPQLKEYA 1042


>gi|163732946|ref|ZP_02140390.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och 149]
 gi|161393481|gb|EDQ17806.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och 149]
          Length = 1125

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 87/833 (10%), Positives = 205/833 (24%), Gaps = 101/833 (12%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ-- 211
            D +  IE        L A +       +  +   L    K     L   +          
Sbjct: 310  DFMGRIEIARDARIALLAAQKTHALHRFAASFLPLYEEQKTLRGWLDFDDLIDRARALLN 369

Query: 212  IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGL 262
               + A     + G    I++  +  + PA   ++  +A                V    
Sbjct: 370  DEKVAAWVLFRIDGGIDHILVDEAQDTSPAQWDVIRKLAAEFTTGEGARTETQRTVFVVG 429

Query: 263  DCHIPTAIWNTITEKSTNITSSNT-----TYSTHPQ-----YSLAKLLDFLDIKREDVKR 312
            D       +     +  +   S             Q     +S       LD+       
Sbjct: 430  DKKQSIYSFQGADPREFDRMQSEFESKIRAAEQLFQNKTLAFSFRSASAILDVVDRTFDG 489

Query: 313  LGNV-----SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
             G+         +  +  +  +  + P        +      P  +K     ++I A+  
Sbjct: 490  QGDAGFSTDEQHIAFKDTLPGRVDIWPVIEPQPAEEDRAWHDPIDRKAAHHHSVILAERI 549

Query: 368  REEAISIAIA------------LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
              +  ++               +     +      L+     L   +       G++I  
Sbjct: 550  ATQIKAMIARDTIPDDQHSDGEITRRPVQAGDFLILVQRRSVLFTEIIRACKNAGLDIAG 609

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            +  + +   L    L +LL+ +    D +++A+ ++ PL  +   E +        +   
Sbjct: 610  ADRLKVGGELAVRDLAALLSFLAVPEDSLSLASALRSPLFGWSEKELFQLAHYRD-KDHL 668

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
             +  +   D       VL  +    +         R+    K    LL    ++    + 
Sbjct: 669  WQALRTQADAYPETLKVLRDLRANVDFLRPYDLIERILTRHKGRRNLLARLGVEAEDGIN 728

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
               +   +   N                           +W E +   +           
Sbjct: 729  ALLSQALAYERN------------------AVPSLTGFLVWMETDDLEIKRQIDSASNQI 770

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              +  +  + ++    ++     +    +   + + G           +     N+    
Sbjct: 771  RVMTVHGAKGLEAPIVILPDSGKRNNPVRDDIVTLNG---------KPVWKTPANDTPAA 821

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
              T  +   +      L L             +         +   +  E +       W
Sbjct: 822  LTTKLDDIAAAQAAERLRLL------------YVALTRAEKWLIVAAAGELSKQNDT--W 867

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
             QR+           +   G       +K D+         P         P   + +  
Sbjct: 868  YQRVDAAVDAAGAHLVDTHGLAV-KRHQKGDWDALPVTAANPGAPMQTALDPCLTTRAPA 926

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            +  + +  +       K       + +      GT  H  +  L               +
Sbjct: 927  RAPLRETVSPSDLGGAKALPGEAGQDEEAAKAYGTSVHLFLEHLSAADTVDWP-----AL 981

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
              I+ +  +   L    +          + + L++ +            +       +  
Sbjct: 982  IDILSNKGDPGLLRAASE----------AKTVLQNPDLAHLFTADSLAEVAVTAEFGTA- 1030

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETA-QKLIDPQLSLEAAALKA 946
              L G  DR+ ++    V   D+KT    P +  A  + I  Q+     ALK 
Sbjct: 1031 -RLHGIIDRL-IVSDTAVLAVDFKTNQTVPSQPAACPEGILRQMGAYTHALKQ 1081


>gi|124022668|ref|YP_001016975.1| exodeoxyribonuclease V gamma chain [Prochlorococcus marinus str.
           MIT 9303]
 gi|123962954|gb|ABM77710.1| possible exodeoxyribonuclease V gamma chain [Prochlorococcus
           marinus str. MIT 9303]
          Length = 1103

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 75/776 (9%), Positives = 191/776 (24%), Gaps = 39/776 (5%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
              L   L E  R  P  P L  SV + V T    + L  +   + G  + +       G
Sbjct: 10  AEWLARVLAEQLRLAP--PGLFDSVDVVVNTWPTSRWLGEQLASVNGISALV--RFPFPG 65

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN-KLPDIIKDLYPESPLSLPIS 141
             + +     L +  +   P    + +  L  L+      +    +++     P      
Sbjct: 66  SRLRQLVRMILGIDSDAEDPWRASRLVWPLLDLLPQLLETEEAAPLREWVNRQPSRPGHL 125

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 LA+++AD  D       K        +++           L+            
Sbjct: 126 NRVQWQLARSIADAFDDYALYRPKLIHQWLEGSDRLLNSSQEMPLTLRWQPLLLRLLAER 185

Query: 202 LNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
           LN           +      +H        + + G +   P    L+  ++   +  + L
Sbjct: 186 LNVEPFGIQVHRAVSKLRNGDHPAMALPSQLRLFGLSSLAPVQVELIQALSGLVDVQMFL 245

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED---------- 309
                 +     +         T     +       L  +L  +  + +           
Sbjct: 246 LTPCPDLWQRCRSRRETLGNEWTEPADGFWLLEAPRLEAILGRMGAEFQQLLEGGGESQL 305

Query: 310 -VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
              + G++       +    +     +    +     +++    ++  S +  +    + 
Sbjct: 306 GQWQEGDLFAAPATMACESGQEPTLLEQLQQQLVSPDDHQPLRRRQEDSSLQFLACPGQW 365

Query: 369 EEAISIAIALRMSLDEN----KKKSALITADRNLARRVKL-----ELTRFGINIDISAGI 419
            +   +   +      +     +   ++T   N    +                      
Sbjct: 366 RQVQLVRDQILQWFAADPSLEPRDVLVMTPQVNRFAPLLASVFNDAAATGVELPWRLTDR 425

Query: 420 PLSTTL-HSSILTSLLNAIFKLNDFMAIATLVKHPLA----KFGFPEKYLSRAKNALELV 474
               +   +  +  LL    +     A+  L+ +P       F   +             
Sbjct: 426 SQQDSPGLTQGMLQLLQIAGERLTATALEGLLANPAIQQQQGFSQDDASSLSRCLQRTGF 485

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
               +       +  SL+                             L    + +    L
Sbjct: 486 RWGLDAEERGGDETHSLIWCLDRWLLGLVLPSTPGLAPGGAAPFAEGLEPAQLAKWWQLL 545

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
             +           +   W +L    ++ +  D                        I  
Sbjct: 546 AQFSRQLKEFRRARTCGAWVELLQGFVEELFGDGGSWAWERQCLLIALEDWRQ----IGA 601

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
              +   A    D++   +  ++ +      + L +      R +    ++L GL+  V+
Sbjct: 602 DCTLLLEAAVVADVLNEALSADSGRFGHRTGA-LTVSALEPMRAIPHRVIVLMGLDADVF 660

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN-IPTIAS 713
           P++  +  F     Q  L    +            + +  +HL+ T + R+ +      +
Sbjct: 661 PRHRERAGFHLLEQQRQLGDPRSSDQDRYV-LLEALMSTRQHLLITWNSRDEHTGECRPA 719

Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
               +  +        +   +G C       L+ +       +P P          
Sbjct: 720 ASPVQQWLGRLQHELSDETFQGLCREPAANPLERSNFLSQGSQPPPSCDRRHFEAR 775


>gi|297566348|ref|YP_003685320.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
 gi|296850797|gb|ADH63812.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
          Length = 726

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 75/689 (10%), Positives = 173/689 (25%), Gaps = 117/689 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E++    ++ G+ +          D+    F +             
Sbjct: 60  GEILAVTFTNKAAGEMKERLGKMVGRAA---------HDLWVSTFHSAA----------- 99

Query: 105 NIQRLLELARLILIWRNKLPDI--IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                L + R+   W    P      D    + L   +           +  ++D I+  
Sbjct: 100 -----LRILRVYGEWVGLKPGFVVYDDDDQNTLLKEILKDLGLEAKPGAVRAVLDRIKNR 154

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                +      +       +  +   +  + + + L    A       +  +     H 
Sbjct: 155 LGGISEFLRDAPDYVAG---ILREDAALVYQRYQQSLRAQGAVDFNDLLLLAIELFENHP 211

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     + P   RL   +A      +V+   D       +      
Sbjct: 212 EILHKVQQRARFIHVDEYQDTNPVQYRLTRLLAGENPNLMVV--GDPDQSIYGFRNADIN 269

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +    + +                            G     +       S      +  
Sbjct: 270 NILDFTKDYP--------------------------GAKVYRLEENYRSTSAILSLANAV 303

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397
             +N   LE  +  ++     V L  A N REEA  +A  +    +    + A++     
Sbjct: 304 IAKNALRLEKTLRPVKGGGDPVCLFRAPNAREEAAFVAREIARLGNFG--QIAILYRTNA 361

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L R  I   +   +          + +         D +++  +V  P    
Sbjct: 362 QSRLLEEHLRRAQIPARLVGAVGFFERREVKDILAYARLAVNPLDSISLRRIVNVP---- 417

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                  +     L   A +       +   +         Q+    V           +
Sbjct: 418 --TRGIGASTVAKLLEHAQQHGI--PALEAFRQAEAILSRPQQVGAFVELVDELAEAAFE 473

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                 ++ +L         K   ++     ++ +  +                    W 
Sbjct: 474 TGPAEFLERVLDATDYKTFIKDEPDAEDRLANLEELLRA----------------ARDWE 517

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            E G TL+     I  T S  +             +    ++   EK+  + ++    ++
Sbjct: 518 AEFGGTLAEFLDTIALTASIEEPAKR---------VQDGKLEAPREKAEEVTLMTLHNAK 568

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RH 696
            L F  + L G+ E + P   + N                E    +    +         
Sbjct: 569 GLEFPIVFLVGVEENLLPHRNSLNRL--------------EDLEEERRLFYVGITRAQER 614

Query: 697 LIYTRSLREN----NIPTIASRWLQRLLV 721
           L  + +           T  SR+L+ +  
Sbjct: 615 LYLSYAEEREIYGKRESTRPSRFLEDIPE 643


>gi|33863360|ref|NP_894920.1| exodeoxyribonuclease V gamma chain [Prochlorococcus marinus str.
           MIT 9313]
 gi|33640809|emb|CAE21264.1| possible exodeoxyribonuclease V gamma chain [Prochlorococcus
           marinus str. MIT 9313]
          Length = 1103

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 77/779 (9%), Positives = 192/779 (24%), Gaps = 45/779 (5%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
              L   L E  R  P  P L  SV + V T    + L  +   + G  + +       G
Sbjct: 10  AEWLARVLAEQLRLAP--PGLFDSVDVLVNTWPTSRWLGEQLASVNGISALV--RFPFPG 65

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN-KLPDIIKDLYPESPLSLPIS 141
             + +     L +  +   P    + +  L  L+      +    +++     P      
Sbjct: 66  SRLRQLVRMILGIDSDAEDPWRASRLVWPLLDLLPQLLETEEAAPLREWVNRQPSRPGHL 125

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-----GMWWLLAADFLKIASKYWT 196
                 LA+++AD  D         + +H                 L   +     +   
Sbjct: 126 NRVQWQLARSIADAFDDYALYR--PKLIHQWLEGSDRLLNSSQEMPLTLRWQPQLLRLLA 183

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           ERL ++       ++        ++        + + G +   P    L+  ++   +  
Sbjct: 184 ERL-QVEPFGIQVHRAVSKLRSGDNPAMALPSQLRLFGLSSLAPVQVELIQALSGFVDVQ 242

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED------- 309
           I L      +     +         T             L  +L  +  + +        
Sbjct: 243 IFLLTPCPDLWQRCRSRREMLGHQWTEPADGLWLLEAPRLEAILGRMGAEFQQLLEGGGE 302

Query: 310 ----VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                 + G++       +    K     +    +     +++    ++  S +  +   
Sbjct: 303 SQLGQWQEGDLFAAPATMACESGKEPTLLEQLQQQLVSPEDHQPLRRRQEDSSLQFLACP 362

Query: 366 NEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKL-----ELTRFGINIDIS 416
            +  +   +   +      +     +   ++T   N    +                   
Sbjct: 363 GQWRQVQLVRDQILQWFAADPSLEPRDVLVMTPQVNRFAPLLASVFNDAAATGVELPWRL 422

Query: 417 AGIPLSTTL-HSSILTSLLNAIFKLNDFMAIATLVKHPLA----KFGFPEKYLSRAKNAL 471
                  +   +  +  LL    +     A+  L+ +P       F   +          
Sbjct: 423 TDRSQQDSPGLTQGMLQLLQIAGERLTATALEGLLANPAIQQQQGFSQDDASSLSRCLQR 482

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                  +       +  SL                              L    + +  
Sbjct: 483 TGFRWGLDAEERGGDETHSLSWCLDRWLLGLVLPSTPGLAPGGAAPFAEGLEPAQLAKWW 542

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             L  +           +   W +L    ++ +  D                        
Sbjct: 543 QLLAQFCRQLKEFRRARTCGAWVELLQGFVEELFGDGGSWAWERQCLLIALEDWRQ---- 598

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
           I     +   A    D++   +  ++ +      + L +      R +    ++L GL+ 
Sbjct: 599 IGADCTLLLEAAVVADVLNEALSADSGRFGHRTGA-LTVSALEPMRAIPHRVIVLMGLDA 657

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN-IPT 710
            V+P++  +  F     Q  L    +            + +  +HL+ T + R+ +    
Sbjct: 658 DVFPRHRERAGFHLLEQQRQLGDPRSSDQDRYV-LLEALMSTRQHLLITWNSRDEHTGEC 716

Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
             +    +  +        +    G C       L+ +       +P P          
Sbjct: 717 RPAASPVQQWLGRLQHELSDETFEGLCREPAANPLERSNFLSQGSQPPPSCDRRHFEAR 775


>gi|323698852|ref|ZP_08110764.1| hypothetical protein DND132_1441 [Desulfovibrio sp. ND132]
 gi|323458784|gb|EGB14649.1| hypothetical protein DND132_1441 [Desulfovibrio desulfuricans ND132]
          Length = 858

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 81/779 (10%), Positives = 187/779 (24%), Gaps = 65/779 (8%)

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNT-ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            A+  + A  L      +  A W+             +   +      LA+ +D +  +  
Sbjct: 80   ADAWSTARHLLAELDGLRMAGWDGSAETTGRLRELRDAARAAELSPGLAERIDAIGARIA 139

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLP--PDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            D    G  S  +     +   ++        +     I ++ +   Q      +      
Sbjct: 140  DWGLGGLSSLTLEAELRLWPSAWRRLFARLEEAGVRLIEQDGVLRGQGFPEGNSPAVRVL 199

Query: 367  EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
                       L   LD +     ++    +  + +   L R G+ +   +      T  
Sbjct: 200  RTTSLEEAGELLASWLDTHPSPEDVVLLAESDGQSLDTALRRQGLPVTGQSARSAQRTAL 259

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              +L   L  ++K     A+  L+  PL+                    L G +    + 
Sbjct: 260  -QLLPIGLALLWKPFSPSALIDLLTAPLSPIHPVLARHL-LDALTAHPGLGGPRWEKALA 317

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
                    R   +     V  W      + +                          T  
Sbjct: 318  RCAEWAAGRENGRDLLEEVAFWTGLSRHDQRSPV------------------DAGAVTAV 359

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
               +SDW                              ++   ++ +           +  
Sbjct: 360  CGRLSDWAGRMAA------------PDRADVLAAVSAMAGEMAETLALTGMDAVTKAQLS 407

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             I+  ++ G    P+  +++   ++           TL+    +E   P+         R
Sbjct: 408  RILDSVVGGGVKGPERAEAAPWAVVSRPGQVRGPVGTLVWWNFSETQPPRLFLPWTGDER 467

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
                       +    +                ++                    L    
Sbjct: 468  ATLGRGGADLRDFDHARQMEVRSWKAPLRHAESVLLVLPDSVRGQAVAPHPLWDELTAAL 527

Query: 724  GTDFFDN-LKKRGQCYLDWTRKL----------DYTTKQPHYKRPKPFPPLEAQPRTYSF 772
            G    +    +     LD   +L                      +      A+    S 
Sbjct: 528  GEAVLEAGTIRAADVLLDPAPELLGCPLSLTDVRPGNPVAPLADWRLPQGPAARRPRESP 587

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            S +   +  P + + + IL++      +        G   H ++  L+ ++ +    E  
Sbjct: 588  SGLINFLGCPLSWFLKYILRIRPGNLAEPPEGGQLYGNFCHRLVELLVGEKTDWTPSEAR 647

Query: 833  HLMKQIIDSHFEKENLP---PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
                ++ D+   +   P   P  +        K   +      +I  +   I  +    +
Sbjct: 648  ARADRLFDALVAQMAAPLNEPGRETTLLVFREKALDAVECLFARILKAGLSIHASEQENV 707

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALKAG 947
              +  G    G+ D +     G     D K       ++E  ++    QL+     L   
Sbjct: 708  RRDQAGQEFVGYVDLVLKDGHGAEIPWDMKWSSTSRHRREEMEQGRALQLAAYCWLL--- 764

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                       +  Y  L Q+  I            + ++        E +     G+ 
Sbjct: 765  ------GGDGKDAAYFMLNQRELISTDA--PWAEERESVAADLPGLWTEALEAYHAGQA 815


>gi|149201424|ref|ZP_01878399.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp.
            TM1035]
 gi|149145757|gb|EDM33783.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp.
            TM1035]
          Length = 1123

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 81/829 (9%), Positives = 189/829 (22%), Gaps = 100/829 (12%)

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY--WTERLVELNASSPVGYQIA--L 214
            +  E  +   L  L  +K       A  FL    +       L   +        +    
Sbjct: 313  LRVEAARPARLALLAMQKTRALHDFARAFLPAYERAKQLRGLLDFDDLILRARDLLTDPA 372

Query: 215  MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCH 265
            + A   + + G    I++  +  + P   +++  +A                +    D  
Sbjct: 373  VAAWVLYRLDGGIDHILVDEAQDTSPVQWQVIERLAQEFTSGEGARADVARTIFVVGDKK 432

Query: 266  IPTAIWNTITEKSTNITSSNT---------TYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                 +     +  +                  +       +    +    +      + 
Sbjct: 433  QSIYSFQGADPREFDRMQQEFGLRLSATNTPLQSRVLAYSFRSSRAILTTVDCCFDQSSE 492

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
            S              LP         +  +   P       D+     D     A  +A 
Sbjct: 493  SGFTPEEGHKAFFDTLPGRVDLWPLVEKPDEDEPPAWHMPVDIRATN-DPAILLARQVAA 551

Query: 377  ALRMSLD-----------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            A+R  +                  +      L+     L   +  E    G+ I  +  +
Sbjct: 552  AMRDMITARQAIPDPKSPSGFRAVQPGDFLILVRRRSALFHEIIRECKAQGLPIAGADRL 611

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
             +   L    L +LL+ +    D +A+AT ++ PL  +   + Y          +     
Sbjct: 612  KVGAELAVRDLEALLSFLATPEDSLALATALRSPLFGWSEHQLYTLAQGRNRPYLWEELR 671

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
              + +  D  +++ D +    +         R+    +    LL     +    +     
Sbjct: 672  ARAAEHPDTITILRDLL-DHADFLRPYDLIERVLTRHEGRRRLLARLGTEAEDGIDALLA 730

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
               +                        +      +W E +   +             + 
Sbjct: 731  QAMAYERR------------------AVDSLTGFLVWMETDDLEIKRQLDSAGNRIRVMT 772

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +  + ++    ++    V         +   G         D                 
Sbjct: 773  VHGAKGLEAPVVILPECGVWRTPPAPQIVTQAGHALWTGRADD----------------- 815

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW-LQR 718
                +   + + L+ +       +    +         +   +  +           +QR
Sbjct: 816  ----MPPSLAAALDTERRALLAERDRLLYVAMTRAETWLIVAAHGDLGKQGDTWYEKVQR 871

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
             ++  G          G            T   P             Q      + IK L
Sbjct: 872  GMLAAGAQPHSFAHGPGLRLDHGIWAETETDSAPSAPPQTITLDPLFQRPAPLPARIKTL 931

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
                         K         +     RG   H ++  L     +        L+   
Sbjct: 932  SPSDLG-----GAKALPGERGLDEEAAKRRGRQIHRLLEFLPTVPAHDWPATAARLLSNG 986

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-GIH 897
             D+   +E      +              L     +          +     ++ + G  
Sbjct: 987  GDAATGEELALLLAEA----------DKVLTRPSLLALFTPAALTEVAITATLDPLQGRR 1036

Query: 898  LTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAAL 944
            + G  DR+ ++    +   D+KT              +  Q+   A AL
Sbjct: 1037 IHGVIDRL-IIDDTRILAVDFKTNALVPDTPADCPDALLRQMGAYAHAL 1084


>gi|312142658|ref|YP_003994104.1| hypothetical protein Halsa_0271 [Halanaerobium sp. 'sapolanicus']
 gi|311903309|gb|ADQ13750.1| hypothetical protein Halsa_0271 [Halanaerobium sp. 'sapolanicus']
          Length = 869

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/428 (15%), Positives = 139/428 (32%), Gaps = 54/428 (12%)

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +    ++   + + +++   N+G  PK    + FLS      L+L+  E    +  +DF
Sbjct: 467  VVKKMEQTPYKSRERVLMINANQGCLPKEFRIDTFLSEADLKGLDLELKEVNYLKQKYDF 526

Query: 689  EMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                   +          +N  T +S +++ L +    +  ++ + +     +   +L  
Sbjct: 527  FSHIFNAKQSELFYIENIDNN-TTSSPFIEELKLRYQIEDTES-EYQSSRQKEILARLFK 584

Query: 748  TT----------KQPHYKRPKPFPPLEAQPRTYSFS--EIKQLINDPYAVYARRILKLD- 794
                        K+   +        +   +  S S   ++ L   P+  Y   I  ++ 
Sbjct: 585  ADGYKNYQSQFSKKLLQEDEMLIELEDFPQQKLSISHYRLENLKRCPFKFYMNDIANIES 644

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHI 852
                  +       G++ H+     I++            ++ I+    EK +L    + 
Sbjct: 645  EKLEVDRQLSMLMIGSIAHDFFEHCIEEFGIPLKNCSRTKLEAILKEKLEKYDLQIHDYF 704

Query: 853  DIIWRHLF-HKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---------ESIGIHLTGFA 902
               +  +    +  S    ++ I S IEKI V    ++ +         E I  +++G  
Sbjct: 705  KKYYHAILFDNLIDSLFSLDKSISSRIEKI-VEAETELNLKKHDIFKSEEGISAYISGRP 763

Query: 903  DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
            D +   + G   I D KTG              QL+L +  L   +F   D        Y
Sbjct: 764  DILIEAEDGSNYIIDLKTGS---------GSMEQLALYSLML---NFKDRDFSTTVKAIY 811

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022
              +  + +ID    ++K      L  K  + L E+                         
Sbjct: 812  KIMDNELEIDRKDREEK------LEIKIKEELSELFEE-------QRYKTIYKSDCKKHC 858

Query: 1023 EYDHLARV 1030
            +Y  + RV
Sbjct: 859  DYYEICRV 866


>gi|77920383|ref|YP_358198.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380]
 gi|77546466|gb|ABA90028.1| ATP-dependent DNA helicase PcrA [Pelobacter carbinolicus DSM 2380]
          Length = 737

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 76/720 (10%), Positives = 183/720 (25%), Gaps = 122/720 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--V 103
            V     T +A  E+R     + G    +   I +           D  +          
Sbjct: 54  QVLAVTFTNKAAAEMRERLQSLVGNIDGL--WISTFHAACARILRRDGEVLGYGRDFTIY 111

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            +  +   +   +   R    D+                       + +A  ID  +   
Sbjct: 112 DDQDQQRLIKDCLAQLRITEKDLKP---------------------RAVATAIDQAKNRG 150

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-- 221
              E         +    +          + + +RL + NA       +  +R   E+  
Sbjct: 151 LLPE---EYIPGDHRGEQVA------RVYELYQKRLQQANALDFGDLLLQTVRLFREYSH 201

Query: 222 ---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +      ++  +A+  +G  +    D       W      +
Sbjct: 202 IRDAYRRRFAHLLVDEFQDTNQVQYAMVKALAD--DGRHLCVVGDDDQSIYAWRGAEIGN 259

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +   ++     + +L          ++  G V     GR               
Sbjct: 260 ILNFERDFPGAS-----VIRLEQHYRSSATILEAAGEVVACNIGRK-------------- 300

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADR 396
                     +         + L    ++ EEA  +A  +    D   + +  A+     
Sbjct: 301 -------GKTLWTDNPAGEPLTLEPLPDDLEEARFVAAEIARLRDAGRHLRDVAVFYRTN 353

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  L R G+   +  G+     +    + + L A+    D ++   +V  P   
Sbjct: 354 AQSRVLEETLVREGLPYVMVGGVKFYARMEIKDVLAYLRALANPADSLSARRIVNVP--- 410

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                                          + ++   RIA  +          RL  E 
Sbjct: 411 ----------------------------SRGIGAVTTGRIAEHEEEAGGFLAACRLCLER 442

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
             L       +      +  +             +D  + +          +        
Sbjct: 443 GVLKGAAAKKVAAFSAFMERFAQRMTEVPFPQLTADLLEESGYAPNLREEAQSAMTEGER 502

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            E +G+       +++      +A      + + ++     +     +   + ++    +
Sbjct: 503 KEAKGR--LENLEQLLAGMEEHQATESSLQEYLEQVALVTDLDSYDTRLDRVTLMTLHAA 560

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-R 695
           + L F  + + G+ EG++P   A                  +    +    +       +
Sbjct: 561 KGLEFPVVFMTGMEEGIFPHGRAAGE--------------RDDVEEERRLCYVGMTRAMQ 606

Query: 696 HLIYTRSLRE----NNIPTIASRWLQRL-LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            L  T + R     +      SR+L  +   L G      L+K     L    +    T 
Sbjct: 607 KLYLTHARRRRIYGDYQYNAPSRFLAEIPPHLMGDKPAPALQKPATHNLASVFEQIEPTP 666


>gi|189500494|ref|YP_001959964.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1]
 gi|189495935|gb|ACE04483.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1]
          Length = 1054

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 82/796 (10%), Positives = 200/796 (25%), Gaps = 66/796 (8%)

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR----AEAEHLMKGTKGP 229
            +     +         +    + ++  E+        +  L+           ++     
Sbjct: 276  HRDIRDYLSKIFSVASLTLGIYQQQKQEMGLVDFADQEFRLLEGLDNPLVRSHLEEKLHL 335

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            +++     + P    L   +++           D       +     +      +     
Sbjct: 336  LLVDEFQDTSPIQLALFLKLSSLARRT--FWVGDIKQAIYGFRGGDARLMQAVLNFLPDG 393

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
            +          + L      V  L    N ++ RS   + +    +    R     +   
Sbjct: 394  S---------KEVLGQSWRSVPSLVCAVNAVFCRSFGETLARENIELMPERQEHSSQGSC 444

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRM-------------SLDENKKKSALITADR 396
                     +       ++ EA++  +   +                      A+++   
Sbjct: 445  FRWDLGAGGLE------QQYEALAAGVQRLVDEGFEVFEKKEEVWRKVRFGDIAILSRTN 498

Query: 397  NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
               +++   L + GI    +A   L  +     LT+ L  +   +D +A A L    LA 
Sbjct: 499  AHVQKIAAILKQNGIPAA-TAQPGLLGSPEGLFLTAGLRRLIDPSDTLATAELYS--LAT 555

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
               PE +L    + LE                  L    +   ++    P    +     
Sbjct: 556  CSEPEVWLQNRLDDLESGNDPDRWLEEGKNAHPVLREIALLRDRSLVLSPFDVVKALVSA 615

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
               A  L+                +       S+                    +    W
Sbjct: 616  TGAARYLLAWCR-------DVDMARMRLSNMQSLLQLAGEYEEECDTKGGTATLQGLVHW 668

Query: 577  FEEEGKTLSSLFSKI-IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
            +E+     + LF +  +     +  +  + ++    ++         +  S +       
Sbjct: 669  YEQLAAEENDLFPEPPVNAVRVLTYHTSKGLEWPVVVLLDLDKPGNADLCSPVIDSPQDV 728

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
                      +                 L  V+QS    + AE    ++A    +A    
Sbjct: 729  DAGAPLKDRFIRFWPSPFVKSEPFPG--LESVIQSREARQAAELSRDESARLLYVAMTRA 786

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                       +              +   D    L    +        L+ +T      
Sbjct: 787  RDCLVLGTSSKSKSFPWLEQAGAACFVTDEDDGIVLPDGSRLPCKRWENLNESTLLNPAG 846

Query: 756  RPKPFPPLEAQPRTYSFSEIKQ----LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
            + +      A     S    +Q    L+       A   +      +   + + T++GT+
Sbjct: 847  KERTPLFWYAPVEPPSERLPEQVVPSLLRAETEATAVESIVYSGTMNLHGNMEATEKGTV 906

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
             H+I+   + +  +         +   ++ +       P   +     F ++        
Sbjct: 907  VHDILAFALTQEPDVCDAASVATL---LEGYGAAALCEPESLVRQLGEFRRMLS------ 957

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
             +         +  P +  +    + L G  D +   + G   I D+K     + +  QK
Sbjct: 958  -ERWPDCMF-HIEAPVEQLLPVEQV-LKGQIDLLLETRRG-WVIIDHKITTIERCQWEQK 1013

Query: 932  L--IDPQLSLEAAALK 945
                  QL     AL+
Sbjct: 1014 AIEYSGQLFAYKQALE 1029


>gi|38233839|ref|NP_939606.1| hypothetical protein DIP1251 [Corynebacterium diphtheriae NCTC 13129]
 gi|38200100|emb|CAE49780.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 288

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 82/268 (30%), Gaps = 32/268 (11%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-KRINKN 827
              S S        P     R I KL              +GTL H ++ E+    R  + 
Sbjct: 12   ALSPSRANDYQQCPLLYRFRAIDKLPEPKTV-----AQVKGTLVHAVLEEMHGWPRNERL 66

Query: 828  TPEINHLMKQII------DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
             P     +K         D+                     +   +   E +     + +
Sbjct: 67   FPAAVKRLKPHWSLMCSKDTELVSLVPEEDTYDF-LVECRSLLRGY--FEMENPQGFDAL 123

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
               +     +   G+ + GF DR+D   +G + + DYKTG  P    +Q+    Q+   A
Sbjct: 124  ACEMYVNATLP-NGVPIRGFIDRVDKAPTGEIRVVDYKTGKKPIPRFSQQA-QFQMRFYA 181

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
                   + +I  +    L Y+++      D +     +   +       +   +IVT  
Sbjct: 182  LVYWR-IYGRIPDQ--LRLMYLKVA-----DSMFLTPSREELEYFERDIQELWEKIVT-- 231

Query: 1002 QNGEQPFISHLRLS-EKSNIQSEYDHLA 1028
             +GE       R    K      + +L 
Sbjct: 232  -DGETG---QFRPKTSKLCGWCSFQNLC 255


>gi|307292736|ref|ZP_07572582.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1]
 gi|306880802|gb|EFN12018.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1]
          Length = 770

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 93/730 (12%), Positives = 181/730 (24%), Gaps = 118/730 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+R     + G     +P + +   +  +                 
Sbjct: 74  SEILAVTFTNKAAREMRERVGRMIGPAVEGMPWLGTFHAIAAKM---------------- 117

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    L  +  L          W A+ LA +ID  + +  
Sbjct: 118 -LRRHAELVGLQSNFTILDTDDQLRLMKQ--LIQAEGIDEKRWPARQLAGLIDQWKNKGL 174

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             E++ A ++E Y                 +  RL ++NA       + ++     H   
Sbjct: 175 TPEEIGAGESEAYANGRGQKL------YAAYQARLRDVNACDFGDLLLHVLVILKRHRDV 228

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +  +    +  +A        +   D       W      + 
Sbjct: 229 LESYQQRFRYIMVDEYQDTNSSQYLWLRLLAQTRKNICCV--GDDDQSIYSWRGAEVANI 286

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      P   + +L          +     V  E   R                
Sbjct: 287 LRFEKDF-----PGAKIVRLEQNYRSTPHILGAASGVIAENGNR---------------- 325

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397
                L   +         V +I   +  EEA  +   +           + A++   ++
Sbjct: 326 -----LGKTLWTDIDVGEKVRVIGVWDGPEEARRVGDEIESIERNGGSLDEVAILVRAQH 380

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             R  +    + G+   I  G             + L  + +  D +A   +V  P    
Sbjct: 381 QTREFEDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQPADDLAFERIVNVPKRGL 440

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G             E +                L L        +   P  +  L     
Sbjct: 441 GDKAVEKLHRLARAEGI---------------PLALAAARILDTDEMTPQARRSLGAFIG 485

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +LA             L     +++     L      + T      +            +
Sbjct: 486 DLARWRDRAAQLPHAELARQILDESGYTAMLQ----AERTTESAGRLENLNELTRAMEEY 541

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           E  G  L  +   +                                    + I+    ++
Sbjct: 542 ETLGAFLEHVSLVMDNEA--------------------------QADERKITIMTIHAAK 575

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L FDT+ L G  EG++P   A +          LN    E+ +   A           L
Sbjct: 576 GLEFDTVFLAGWEEGIFPSQRALDE-------GGLNSLEEERRLAYVAITRARKLC---L 625

Query: 698 IYTRSLRENNIPT---IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
           I   + R         I SR++  L      +             +W+ K D        
Sbjct: 626 ILHAANRRIYGQWTSSIPSRFVGELPPEHVEEESSMSGGASLWRANWSEKADPFANVQRG 685

Query: 755 KRPKPFPPLE 764
               P     
Sbjct: 686 SGRGPGWQRA 695


>gi|89067401|ref|ZP_01154914.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
            granulosus HTCC2516]
 gi|89046970|gb|EAR53024.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
            granulosus HTCC2516]
          Length = 1119

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 87/841 (10%), Positives = 201/841 (23%), Gaps = 110/841 (13%)

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA-DFLKIASKYWTERLVELNASSPVGY- 210
            A+++  ++   +  ED+      +       A   F     + +  + +           
Sbjct: 301  AELMGRLDPVMQTVEDIRPAVIAQLAYERTRALYAFATPFCRAFETKKLSRGLLDFDDLI 360

Query: 211  ---QIALMRAEAEHLMKGTKG----PIIIAGSTGSIPATARLMSTV---------ANHPN 254
               +  L        +          I++  +  + P   R++  +         A    
Sbjct: 361  LKTRALLEDRALAQWVLFRLDGGIDHILVDEAQDTSPDQWRVIERLTDELAAGRGAGEDR 420

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS----------THPQYSLAKLLDFLD 304
               +    D       +     +         T               Q+S       L 
Sbjct: 421  ERTLFVVGDKKQSIYSFQGADAEMFEAKRELFTDRLATGGGKLHSQPLQFSFRSAAAILQ 480

Query: 305  IKREDVKR-----LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            +     +      L  V      ++ +  +  L P   +   TD        +       
Sbjct: 481  LVDATFQGDLREGLDPVVYHRTFKTELPGRVDLWPVEPEAEKTDTDAPWYKPVDHVSEQH 540

Query: 360  ALIEADNEREEAISI------------AIALRMSLDENKKKSALITADRNLARRVKLELT 407
              ++      E I                 +            L+     L   +     
Sbjct: 541  HDVKLARRVAEQIQTLINRKATIPVEKGGRILRRPIHEGDILILVQRRSTLFAEIIRACK 600

Query: 408  RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
            + G+ I  +  + +   L    L +LL  +    D +++A  ++ PL  +   E +    
Sbjct: 601  KLGLRIAGADRLRVGAELAVRDLAALLRFLALPEDDLSLAAALRSPLFGWTEQELFTLAH 660

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
                  +     ++S D  +    + D +  Q +        SR+         LL    
Sbjct: 661  HRR--GLLWSALRDSDDHPETLKTLRD-LRAQTDFLRPYDLLSRILIRHGGRQKLLDRLG 717

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
             +    +        +                                W E E   +   
Sbjct: 718  AEAEDGIDALLAQALAYER------------------STVPSLTGFLSWMETEDVEVKRQ 759

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
              +  E    +  +  + ++    ++    V+     + +                    
Sbjct: 760  MDEQGERIRVMTIHGAKGLEAPVVILPETGVRQTQSDTRSAIWPL--------------- 804

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
                            L   +Q         +   +    +         +      +  
Sbjct: 805  ----EDVVAWRPSTDRLPAALQDARAKLVEAEERERRRLLYVALTRAEKWLIVCGAGKIG 860

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK-RPKPFPPLEAQ 766
                 S +      L       + +  G      T         P      +P  P    
Sbjct: 861  KEVGDSWYGMVEAGLERLGALPHPQPGGDGLRYETGDWSAPDLAPPEPDAAEPVAPPNFA 920

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
            P     + ++ L   P  +   ++L  D     ++     +RG   H ++  L       
Sbjct: 921  PVALPPAALQTLS--PSDLGGAKVLPGDPAGGDREA--ALERGNQVHLLLEHLPGTLP-- 974

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                        ++      +L P +    R      + + L     +    EK    +P
Sbjct: 975  ------------LERANVALSLFPDLPAPERQSLLTDAEAVLSAP-GLAELFEKGLAEVP 1021

Query: 887  AKMAIESI-GIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAA 943
                +  + G  L G  D +  +    + + D+KT        E   + +  Q+   AAA
Sbjct: 1022 VTATLAELNGARLHGTIDLL--IPGEPLRVIDFKTNRLVPKTPEEVPEGLLRQMGAYAAA 1079

Query: 944  L 944
            L
Sbjct: 1080 L 1080


>gi|254385059|ref|ZP_05000393.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194343938|gb|EDX24904.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 279

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 81/270 (30%), Gaps = 32/270 (11%)

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
             A+P + S S     +  P     R I KL              RGTL H ++  L    
Sbjct: 3    AARPSSLSPSRAGDFMRCPLLYRFRVIDKLPEK-----PSAAATRGTLVHAVLERLFDHP 57

Query: 824  INKNTPEINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHEEK 873
              + T      +         +          E         W      +   +   E+ 
Sbjct: 58   AEERTAPRAKALIPGQWDRLLEAKPELSELFPEGDEGAGLARWLTEAEALVDRWFTLEDP 117

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
             +  +E +      +  +ES G+ L G  DR+D+  SG V I DYKTG  P+     +  
Sbjct: 118  TR--LEPVEREFFVETELES-GLRLRGIIDRVDVAPSGEVRIVDYKTGKAPRP-EYAEGA 173

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
              Q+   A  +       +       L  + L     +                E+  + 
Sbjct: 174  LFQMKFYALVVWR-----LKGVVPRRLQLVYLGSGDVVTYDPVVAD-------LERVERK 221

Query: 994  LIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
            L+ +   ++   +      R ++      +
Sbjct: 222  LLALWDAIREATETGDWRPRPTK-LCGWCD 250


>gi|145219722|ref|YP_001130431.1| DNA helicase/exodeoxyribonuclease V, gamma subunit
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205886|gb|ABP36929.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Chlorobium
           phaeovibrioides DSM 265]
          Length = 1074

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 97/939 (10%), Positives = 235/939 (25%), Gaps = 101/939 (10%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           L++            +P  L    I V ++   + L  E  E  G           L D 
Sbjct: 14  LVSELAGRLSGRRLSSP--LTEEIIVVQSRGMQRWLSIELAEKNG---IWANSRFPLPDT 68

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
           +  +         + +      Q    +  ++      L D        S LS       
Sbjct: 69  LVRECFRIFFSEVDTSRYFGVQQMTWNIMTILPP----LLDEPPFAAIRSYLSFDGEGLR 124

Query: 145 AIWLAKNLADIIDIIETEEKK-WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
              LA+  A I +  +       +   +   EK    W             W   +    
Sbjct: 125 LYQLAERAAAIFNEYQFYRPDLLQRWESGGEEKGEGLWQSIL---------WKSLVAGSG 175

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
              P+           +  M G    I + G +        ++S ++   +  + +    
Sbjct: 176 GVQPLWALKDEFCRGLKLPMSGFPERISLFGISYLPKFHLDILSALSRVTDITLFVLSPT 235

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                 I    T+   ++         +P  +    +   +          +   ++   
Sbjct: 236 SDFWADIMARKTQARLSVEERIYRNEGNPLLASLGHMGR-EFSSLMQDLADSAEMQLEAY 294

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIP--NIQKCFSDVALIEADNEREEAISIAIALRMS 381
                ++ L    +DM +            +    S V +    +   E   +  +L   
Sbjct: 295 EEPGEETLLRSLQTDMLHLQGAGADAAPRPLPPNDSSVQIHSCHSPLREVEVLHDSLLSF 354

Query: 382 LDEN----KKKSALITADRNLARRVKLELTRFGI------NIDISAGIPLSTTLHSSILT 431
            +       +   ++T D          +   G          ++    ++    +S + 
Sbjct: 355 FETYRDLEPRDVLVLTPDIETYSPYISAVFGAGNHGETRIPFTVADRSMMNEGDIASAIA 414

Query: 432 SLLNAIFKLNDFMAIATLV-KHPLAKFGFPEKYLSRAKNA-----------LELVALRGN 479
           +LL+          +  L+ + P+ +    +                     E   L   
Sbjct: 415 ALLDLATSRLGAAEVFDLLSRLPVRRRFALDDDAQECIRRWIEKTGIRWGLDETDRLNAG 474

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
             SY     ++ +   +           +   L  +D +      + +    + +   + 
Sbjct: 475 VPSYRQNSWRAGLDRLLLGYAMPDEGSLYGGILPYDDID--ASFAETLGIFASFVDALER 532

Query: 540 NKNSTCGNLSISDW-TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                    ++ +W           +  D   +           TL  LF++ +      
Sbjct: 533 LSERLNEPETLQEWRLVFLGMLDDFIVADADSEREYSEMLAIADTLGELFNETLHKE--- 589

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
             +   +   +   ++             +     L  R + F  + L G+N+       
Sbjct: 590 PVSPEVFTSWVRSKLEERRQNLGFMTG-GVTFCAMLPMRSIPFRVICLLGMND---AAFP 645

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE--MANGTRHLIYTRSLRENNIPTIASR-- 714
            ++   S  + S            +  + F   M +    L  +   +     +  S   
Sbjct: 646 RQHHAPSFDLVSSNPRPGDRSLRNEDRYLFLEMMLSARDLLYISYVGQSVRDNSSLSPSV 705

Query: 715 -------WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP--------------- 752
                   ++R+  L       +          ++     +                   
Sbjct: 706 LVVELLDAIERVFSLSDGSSIADRLTVRHRLQAFSPAYFDSAGPLFSYSEDNFHALSSRT 765

Query: 753 ------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP---HFKKDP 803
                      +P      +    S  E+ +   +P A +    L +             
Sbjct: 766 YGGGERPPFVDEPLGVPGDETCVVSLDELIRFYGNPAAFFLESTLAIRQNRLMTPLIDRE 825

Query: 804 DRTDRGTLFHNIITELIKKRI-NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
             +  G   + I  EL++K +   +  +I  L +            P  I          
Sbjct: 826 PFSIEGLDAYMIREELLEKILQGSDPSDILPLFQARG------IIPPSGIGERLFASMAT 879

Query: 863 ISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGIHLTG 900
            S +F        +++ +    + P  + ++  G  LTG
Sbjct: 880 ESAAFAA----RLTALTEGAAELPPLPVNLDIGGFRLTG 914


>gi|94497982|ref|ZP_01304546.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
 gi|94422565|gb|EAT07602.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
          Length = 758

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 81/737 (10%), Positives = 183/737 (24%), Gaps = 116/737 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+R+    + G     +P + +   +                    
Sbjct: 62  SEILAVTFTNKAAREMRARVGAMIGDAVEGMPWLGTFHAIAARM---------------- 105

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    L  +  L          W A+ L  +ID  + +  
Sbjct: 106 -LRRHAELVGLQSNFTILDTDDQLRLMKQ--LIQAEGIDEKRWPARQLGGLIDQWKNKGL 162

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
             +++ A    +            +     +  RL ++NA       + ++     H   
Sbjct: 163 TPDEVSA-GEAEGYAHGKG-----QKLYAAYQARLRDVNACDFGDLLLHVLTILKMHRDV 216

Query: 225 GTK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
             +       I++     +  +    +  +A        +   D       W      + 
Sbjct: 217 LEQYQQKFRYIMVDEYQDTNSSQYLWLRLLAQERKNICCV--GDDDQSIYSWRGAEVANI 274

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      P  ++ +L          +     V  E   R                
Sbjct: 275 LRFEKDF-----PGATIIRLEQNYRSTPHILGAASGVIAENGNR---------------- 313

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397
                L   +         V +I   +  EEA  I+  +             A++   ++
Sbjct: 314 -----LGKTLWTDIDVGEKVKVIGVWDGPEEARRISEDIEAIERSGGSLDDVAILVRAQH 368

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             R  +    + G+   I  G             + L  + +  D +A   +V  P    
Sbjct: 369 QTREFEDRFIQIGLPYRIIGGFRFYERAEIRDALAYLRLVNQPADDLAFERIVNVPKRGL 428

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G                                         +         +    +  
Sbjct: 429 GDKAVEKLH------------------------------RLARAQGIPLTLAAARILDTD 458

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           EL       +   I  L  ++                  +                 L  
Sbjct: 459 ELTPQARRSLGAFIGDLARWRDRAGQLPHAELARQILDESGYTAMLQADRTTESAGRLEN 518

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
             E       +  +             +++ ++ ++D E       +   + I+    ++
Sbjct: 519 LTELTRAMEEYDTLGA-----------FLEHVSLVMDNEA----QAEERKVTIMTIHAAK 563

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F+ + L G  EG++P   A +         +  L + E+    A      A     +
Sbjct: 564 GLEFEHVFLAGWEEGLFPSQRALD---------EGGLNSLEEERRLAYVAITRARRRCTI 614

Query: 698 IYTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
           ++  + R       +I SR++  L      +             +W+ + D         
Sbjct: 615 LHAANRRIYGQWTSSIPSRFVGELPPEHVEEESSMSGGASLWRANWSEREDPFANVARGT 674

Query: 756 RPKPFPPLEAQPRTYSF 772
              P          +S 
Sbjct: 675 GRGPGWQRAQSSGQFSA 691


>gi|322411491|gb|EFY02399.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
            dysgalactiae ATCC 27957]
          Length = 1210

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 93/849 (10%), Positives = 225/849 (26%), Gaps = 104/849 (12%)

Query: 184  AADFLKIAS----KYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAG 234
              + LKI      K + +   +  A          ++   E+       +     +++  
Sbjct: 356  LLELLKIVVLAFSKAYLDAKKQEGAFEFSDIAHFAIQILEENPDIRQTYQDQYHEVMVDE 415

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP-Q 293
               +     RL++ ++   NG       D       +     +  N    +    T+P Q
Sbjct: 416  YQDNNHMQERLLTLLS---NGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDY--QTYPEQ 470

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI- 352
              L  L +    + E ++    V   +   S+                   + +      
Sbjct: 471  GKLILLKENFRSQSEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSIGQKIASPEHRAK 530

Query: 353  -----QKCFSDVALIEADNER-EEAISIAIALRMSLDENK---KKSALITADRNLARRVK 403
                   C   + + +AD+    E   +A  +    +E     +   L+ + R     + 
Sbjct: 531  LLLYNTDCEDHLDIEDADDISPSEVTIVAKEIIRLYNEQHVPFEDITLLVSSRTRNDAIF 590

Query: 404  LELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                ++GI +    G      ++   ++   L  I    +  A+  L++ P+  F   E 
Sbjct: 591  HTFNQYGIPLVADGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDEL 650

Query: 463  YLSRAK---NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                 +   +          + +         ++ +    K +  +   +S         
Sbjct: 651  TRLALQQGDDKEADCLYDKLERACLGTGTHPELVHQDLKLKLSRFIETLKSWRRYAKIRS 710

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN----VCLDEHRKLPNL 575
               L+  I           +   +    +++           Q+    +          L
Sbjct: 711  LYDLIWKIFNDRFYFDFVGSQVKAEQAQVNLYALALRANQFEQSGYKGLSRFIGMIDKVL 770

Query: 576  WFEEEGKT--------------------LSSLFSKIIETGSCIKANAIEWIDIITRL--- 612
              + +                       L   +  ++          +    I++R    
Sbjct: 771  ETQNDLADVEVASPKQAVNLMTIHKSKGLEFKYVFLLNCDKRFAMTDVHAPFILSRQQGI 830

Query: 613  ----IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW-------------- 654
                +       + +   ++ +        LN   L L  L+E +               
Sbjct: 831  GIKYLADVKDVLEEKTLPSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKQIY 890

Query: 655  ---PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG----TRHLIYTRSLRENN 707
                 +  K+   +   +   +L  A +    +  D+ +A         L +     E +
Sbjct: 891  LIGKASKEKSQEFTDGKRLGNHLPLALRERLMSFQDWLLAIADTFTAEDLHFDVQFIEES 950

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
              +  +    +   +   D   + ++           L+  ++           P    P
Sbjct: 951  ELSPEAIGHLQSQQVLQPDDLKDNRQSADITRAI-DMLNKVSQLNERYEAAIHLPTVRTP 1009

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD----PDRTDRGTLFHNIITELIKKR 823
                 +    L +D   V  +    L+     +       + +  G   H ++  +   +
Sbjct: 1010 SQLKAAYEPLLDSDGVEVMEKSYRTLNEFTLPEFSKQVKVEASQVGLALHRLMQAIPLTK 1069

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS--IEKI 881
               +   I   +++I      K  L             K+   F E     +S      +
Sbjct: 1070 P-ISLATIAQALEEIEAEAVVKAALD----------LQKVEQFFTETALGKRSQTYSTNL 1118

Query: 882  FVNIPAKM----AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937
            +   P  +     +      + G  D   LL    +++ DYKT         +     QL
Sbjct: 1119 YREAPFAILKKDPLSQEDYVIRGIIDA-FLLFEDHIELIDYKTDRYRHPSDLKTRYQQQL 1177

Query: 938  SLEAAALKA 946
             L A AL  
Sbjct: 1178 ELYAEALSQ 1186


>gi|296130310|ref|YP_003637560.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
 gi|296022125|gb|ADG75361.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
          Length = 1162

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/630 (10%), Positives = 151/630 (23%), Gaps = 39/630 (6%)

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATAR 244
                +  R    ++           R   +        +     +++     +  A   
Sbjct: 242 DLVADYRARKRTADSLDFGDQVALAARIARDVPEVGAAERERFRVVLLDEYQDTSYAQLV 301

Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
           L+  +     G  V    D H     W   +                             
Sbjct: 302 LLQAL--FTAGHPVTAVGDPHQSIYGWRGASPGGLARFPGAFPVVE------KGPDGRER 353

Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
            +  DV  L              +    P  T   R         P        V  + A
Sbjct: 354 RRPADVVPLSTSWRNDIAILDAANAVAAPLRTGGARVDVP--RLAPRPGAGDGLVQALVA 411

Query: 365 DNEREEAISIAIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISAGI 419
               +EA ++A  +             + +A++   R+    ++  L   G+ +++    
Sbjct: 412 QTVEDEADAVAAWVARWWRPAHHPAGARTAAVLCRKRSQFEPLRRALRAAGLPVEVVGLG 471

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            L  T     L ++L A        A+  L+     + G  + +                
Sbjct: 472 GLLATPEVVDLVAVLQAAHDPTRGDAVVRLLTGARTRLGASDLHALGEWARQGARPTGRP 531

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
             +  +          +                     E    L+D     +  ++    
Sbjct: 532 GGAPGVEADVVDERSLVDALDAPPPPGWRSPSGRTVTPEGRRRLLD-----LAAVLRAVR 586

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
                     + +  +L    ++     +          +    +++ F++  +  +   
Sbjct: 587 AHQGLSLPELVGEAERLFGLDIEVQARADVTPGRARAHLDALADVAAEFARGADRPTLGA 646

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             A  W++      DG  +         + +     ++ L +D +++ G+ +G  P    
Sbjct: 647 FLA--WLEAADAREDGLELPVTEPDPDAVQVTTVHAAKGLEWDAVVVAGMVDGGLPATAM 704

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
                 +       L      +   A D                     P   +  L+R 
Sbjct: 705 LGKDGPKDSAWLTGLGVLPYPLRGDADDLPRLECA----------GAESPKELAERLERF 754

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRK--LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            +  G       ++     L   R+  L         K P+   P          +E+  
Sbjct: 755 RLDAGDHEVAEERRLAYVALTRAREALLLTAAYWGDAKAPRQASPFLTDLMDAGLAEVVG 814

Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTD 807
              +P    +     L     +  DP   D
Sbjct: 815 RAEEPDPKASNPRAALTPTAQWPADPFARD 844



 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 78/743 (10%), Positives = 165/743 (22%), Gaps = 77/743 (10%)

Query: 206  SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
             P G + A +        +  +  +  AG     P     +  +   P    ++  L   
Sbjct: 434  HPAGARTAAVLCRKRSQFEPLRRALRAAGL----PVEVVGLGGLLATPEVVDLVAVLQAA 489

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                  + +    T   +       H     A+        R   +  G    E      
Sbjct: 490  HDPTRGDAVVRLLTGARTRLGASDLHALGEWAR-----QGARPTGRPGGAPGVEADVVDE 544

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                  L         +       P  ++   D+A +       + +S+   +  +    
Sbjct: 545  RSLVDALDAPPPPGWRSPSGRTVTPEGRRRLLDLAAVLRAVRAHQGLSLPELVGEAERLF 604

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                 +         R +  L          A    +         + L A     D + 
Sbjct: 605  GLDIEVQARADVTPGRARAHLDALADVAAEFARG--ADRPTLGAFLAWLEAADAREDGLE 662

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
            +      P       +     A   LE  A+         +   +++             
Sbjct: 663  LPVTEPDP----DAVQVTTVHAAKGLEWDAVVVAGMVDGGLPATAMLGKDGPKDSAWLTG 718

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                      D +    L     +    L           G+  +++  +L    L    
Sbjct: 719  LGVLPYPLRGDADDLPRLECAGAESPKELAERLERFRLDAGDHEVAEERRLAYVALTRAR 778

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                         +  +  S   + +++ G             +  ++           +
Sbjct: 779  EALLLTAAYWGDAKAPRQASPFLTDLMDAG-------------LAEVVGRAEEPDPKASN 825

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
                +  T +     F     G           A     +    +       E  IG   
Sbjct: 826  PRAALTPTAQWPADPFARD--GAAPRRDAVTAAAVAVTAAMAELAASGTGPDEGEIGTDP 883

Query: 686  HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
            HD            T +    +                      +     + +     +L
Sbjct: 884  HD------------TGAGATGSASHDTGAGATGAAASDRPPTPGSPVGDREDWDALADRL 931

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                        +   P        S S + +L   P        L L      +  P  
Sbjct: 932  LAEQAARRRGDGRVALPAH-----LSASSLVRLAAQPEQFA----LHLRRPVPREPSPQA 982

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              RGT FH  +     +    +  ++      ++     +  L                 
Sbjct: 983  R-RGTAFHAWVEAWYGRAALVDVDDLPGADDDVLPDDPGQVELRAA-------------- 1027

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT-----DYKT 920
             FL      ++    + V +  +  +   G  L    D +                D+KT
Sbjct: 1028 -FLRTPWAHRA---PVAVEVDVETTV--GGYVLRSRIDAVFSDPDRPGVPGAVVVVDWKT 1081

Query: 921  GDNPKKETAQKLIDPQLSLEAAA 943
            G  P+    +   D QL++   A
Sbjct: 1082 GAPPRDPAERASRDLQLAVYRLA 1104


>gi|320546849|ref|ZP_08041154.1| ATP-dependent DNA helicase PcrA [Streptococcus equinus ATCC 9812]
 gi|320448513|gb|EFW89251.1| ATP-dependent DNA helicase PcrA [Streptococcus equinus ATCC 9812]
          Length = 770

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 90/694 (12%), Positives = 199/694 (28%), Gaps = 120/694 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R   + +    +  L  I +   +       D       N     
Sbjct: 54  NILAITFTNKAAREMRERAMALNPATADTL--IATFHSMCVRILRRD-ADHIGYNRNFTI 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++             L P+       +    I  AKN  D++D +  E
Sbjct: 111 VDPGEQRTLMKRILKTLN---------LDPKKW--NERAILGTISNAKN--DLLDEVAYE 157

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            +  +    +                    K +   L +  A       +  +R   ++ 
Sbjct: 158 NQAGDMYTQIV---------------AKCYKAYQAELRQSEAMDFDDLIMLTLRLFDQNP 202

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 203 DVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  +  L +     ++ ++    V N    R              
Sbjct: 261 NILDFEK-----DYPEAKVVMLEENYRSTKKILQAANAVINNNRNRRPK----------- 304

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
                     K+         +    A +EREEA+ +A  +   + E     K  A++  
Sbjct: 305 ----------KLWTQNADGEQIVYYRARDEREEAVFVASTIDNIVREQGKNFKDFAVLYR 354

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + S LN I    D ++   +V  P 
Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNVIANTADNISYERIVNEPK 414

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G       R                              A Q+N + +    + +  
Sbjct: 415 RGVGPGTLEKIRT----------------------------FANQQNMSLLDASANIMLS 446

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             K  A   V  +   +  L       + T    ++ D T           L        
Sbjct: 447 GVKGKAAQAVWELSNLLMNLRDDLDKYSVTELVEAVLDKTGYLDALRVQNTL---ESQAR 503

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  T++  F +  +     ++   +    +  L           +++ + ++   
Sbjct: 504 IENIEEFLTVTKNFDENQDDAPEDESGIDKLSRFLNDLALIADTDDGDTETAEVTLMTLH 563

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P + A               +  ++   +    +      
Sbjct: 564 AAKGLEFPIVFLIGMEEGVFPLSRA--------------AEDQDELEEERRLAYVGITRA 609

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723
             L++     TR+L         SR+++ +    
Sbjct: 610 EQLLFVTNANTRTLFGKTSYNRPSRFIREIDDEL 643


>gi|295105534|emb|CBL03078.1| ATP-dependent DNA helicase PcrA [Faecalibacterium prausnitzii
           SL3/3]
          Length = 892

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/717 (11%), Positives = 184/717 (25%), Gaps = 114/717 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           +V     T +A  EL+     + G +          GD V         +          
Sbjct: 111 NVMAITFTNKAAGELKERLRRMLGGEE---------GDEVFASTFHSACVRI-------- 153

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  E       +     D  + +     +   +S  +     K   + +   + +   
Sbjct: 154 LRRWAEEIGYPRSFTIYDTDDAQRVMKT--VYKELSIDDKFLPIKAAINQMSRWKDQLVS 211

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E         +                 + ++L E  A          ++  AEH    
Sbjct: 212 PEQ----ALADHARDVKSTQT--ARIYAAYEKKLKEAGAFDFDDLIYQTVQLLAEHPDVR 265

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     +  A  RL+S +        V+   D       +   T ++  
Sbjct: 266 EFYQNKYRYLLVDEYQDTSVAQFRLVSLLTGPERNICVV--GDDDQSIYRFRGATIENIL 323

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                                            G  +  +       S      +     
Sbjct: 324 NFEKLYP--------------------------GTKTIRLEQNYRSTSNILNAANCVIQH 357

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS--ALITADRNL 398
           NT+     +         V +  A+NE++EA  IA  +   L E    +  A++      
Sbjct: 358 NTERKGKTLWTDNGEGDKVQVYTAENEQDEASHIADVIGQHLKEGGHLADHAILYRMNAQ 417

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +  ++   TR GI   I  G   +       + S ++ +    D + +  ++  P     
Sbjct: 418 SAPIESYFTRAGIPHKIVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEP----- 472

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                K     +D+ + +  +      +      Q         
Sbjct: 473 -------------------ARKIGATTVDVIADLAGQQGVSMLDIISHADQYAKLSRAVM 513

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
             +       +    L T   ++ +       SD  +LT                     
Sbjct: 514 PLLKFWQIYQRLQDSLATRTLDEFA-------SDVIELTGYKAMLEADAAKGHEDAADRL 566

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           +    L +      +     +A    +   +  +     +    E +  + ++    ++ 
Sbjct: 567 QNLGQLVNNVKNYCDQ-HGEEATLEGY---LEDIALISDIDSYNESNDQVVLMTIHSAKG 622

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHL 697
           L F  + L G+ EGV+P   +K               +      +    +       + L
Sbjct: 623 LEFPYVFLIGMEEGVFPSEMSKY--------------SEADLEEERRLAYVGITRAKKEL 668

Query: 698 IYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
             + S+             SR+L+ +      +    + ++      W  +   T  
Sbjct: 669 YISNSVTRMLYGRTQRNEPSRFLREIEPEYIEETRSPVLEQRSRMGGWGSEYSDTVP 725


>gi|323127008|gb|ADX24305.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
            equisimilis ATCC 12394]
          Length = 1210

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 94/834 (11%), Positives = 222/834 (26%), Gaps = 96/834 (11%)

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMS 247
            K + +   +  A          ++   E+       +     +++     +     RL++
Sbjct: 369  KAYLDAKKQEGAFEFSDIAHFAIQILEENPDIRQTYQDQYHEVMVDEYQDNNHMQERLLT 428

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP-QYSLAKLLDFLDIK 306
             ++   NG       D       +     +  N    +    T+P Q  L  L +    +
Sbjct: 429  LLS---NGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDY--QTYPEQGKLILLKENFRSQ 483

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI------QKCFSDVA 360
             E ++    V   +   S+                   + +                 + 
Sbjct: 484  TEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSVGQKIASPEHRAKLLLYNTDHEDQLD 543

Query: 361  LIEADNER-EEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDIS 416
            + +AD     E   +A  +    +E     +   L+ + R     +     ++GI +   
Sbjct: 544  IEDADGISPSEVTIVAKEIIRLHNEQHVPFEDITLLVSSRTRNDAIFHTFNQYGIPLVAD 603

Query: 417  AGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK---NALE 472
             G      ++   ++   L  I    +  A+  L++ P+  F   E      +   +   
Sbjct: 604  GGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDELTRLALQQGDDKEA 663

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
                   + +         ++ +    K +  +   +S            L+  I     
Sbjct: 664  DCLYDKLERACLGTGTHPELVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFNDRF 723

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN----VCLDEHRKLPNLWFEEEGKT----- 583
                  +   +     ++           Q+    +          L  + +        
Sbjct: 724  YFDFVGSQAKAEQAQANLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVAS 783

Query: 584  ---------------LSSLFSKIIETGSCIKANAIEWIDIITRL-------IDGETVKPK 621
                           L   +  ++          I    I++R        +       +
Sbjct: 784  SKQAVNLMTIHKSKGLEFKYVFLLNCDKRFAMTDIHAPFILSRQQGIGIKYLADVKDVLE 843

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVW-----------------PKNTAKNPFL 664
             +   ++ +        LN   L L  L+E +                    +  K+   
Sbjct: 844  EKTLPSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKQIYLIGKASKEKSQEF 903

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANG----TRHLIYTRSLRENNIPTIASRWLQRLL 720
            +   +S  +L  A +    +  D+ +A         L +     E +  +  +    +  
Sbjct: 904  TDGKRSGNHLPLALRERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHLQSQ 963

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
             L   D   + ++           L+  ++           P    P     +    L +
Sbjct: 964  QLLQPDDLKDNRQSADITRAI-DMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDS 1022

Query: 781  DPYAVYAR--RILKLDFIPHFKKD--PDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
            D   V  +  R L    +P F K    + +  G+  H ++  +   +   +   I   ++
Sbjct: 1023 DGVEVMEKSYRTLNAFTLPEFSKQVKVEASQVGSALHRLMQAIPLTKP-ISLATIAQALE 1081

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM----AIE 892
            +I      K  L       +      +   F       Q+    ++   P  +     + 
Sbjct: 1082 EIEAEAVVKAALDLQKVEQFFTE-TALGKRF-------QTYSTNLYREAPFAILKKDPLS 1133

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
                 + G  D   LL    +++ DYKT         +     QL L A AL  
Sbjct: 1134 QEDYVIRGIIDA-FLLFEDHIELIDYKTDRYRHPSDLKTRYQQQLELYAEALSQ 1186


>gi|312898542|ref|ZP_07757932.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis F0359]
 gi|310620461|gb|EFQ04031.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis F0359]
          Length = 738

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 88/747 (11%), Positives = 200/747 (26%), Gaps = 127/747 (17%)

Query: 1   MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60
           MH + P   T    S   + +         +        +P     +     T +A +E+
Sbjct: 23  MHTEGPLSVTAGAGSGKTKVLTC------RIARLLEIGTDPY---RILAITFTNKAAKEM 73

Query: 61  RSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118
           R     + G  +    L    +      +    ++          +      ++  L+  
Sbjct: 74  RERVQNLVGVAAERIWL---STFHSFCAKLLRFEIDGFLGYTKNFTIYDSSDQVT-LMKS 129

Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
              +L    K   P + L    S  NA+  A   A   D   T +               
Sbjct: 130 CLKELNLDDKQFPPRTVLGTVSSAKNALLRADEFAKSADDFYTLKVS------------- 176

Query: 179 MWWLLAADFLKIASKYWTERLVELNASSP-----VGYQIALMRAEAEHLMKGTKGPIIIA 233
                       A   + ++L + NA        +  ++   R +     +     I++ 
Sbjct: 177 -----------EAYTLYEKKLKDNNAVDFDDLLLLAVKLLQERQDIREKYQERFRYILVD 225

Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
               +  A   L   +A       V+   D       W     ++            +P 
Sbjct: 226 EYQDTNKAQYLLTQILAAKWRNICVV--GDADQSIYAWRGADIQNIMDF-----MRDYPD 278

Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            +  KL       +  ++    V +    R               +   +   +K     
Sbjct: 279 GTNVKLEQNYRSTKTVLQAANAVIDNNEARLKK-----------ALWTENPQGHK----- 322

Query: 354 KCFSDVALIEADNEREEAISIAIAL--RMSLD-ENKKKSALITADRNLARRVKLELTRFG 410
                +    A  E +EA  IA  +  R S++ E     A++    + +R ++ +L R+G
Sbjct: 323 -----IVHYHAQTEHDEADYIAGVIYNRHSIENEPYGHMAILFRTNSQSRVLEEKLMRYG 377

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
           I   +  G           + + L  ++   D +++  ++  P    G            
Sbjct: 378 IPYTMVGGTKFYDRKEIKDVIAYLRVLYNPEDSLSLVRILNVPKRSIGATSIEHLT---- 433

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                                             +  + +  + ED  +   +   +   
Sbjct: 434 ---------------------------DYAEENGISLFDALSTTEDLPVTKRVKTALEDF 466

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
              + +     + T     I    K T                    E  G+ +++    
Sbjct: 467 AALIFSLLGEVSKTDVPTLIERVVKETGYGDMLDKEAAQDPQGESRKENVGQLINAAQEY 526

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
           + +             D +  +     V       S + ++    ++ L F  + L GL+
Sbjct: 527 MRDNPDG------NLQDFLENVALVSDVDEFEGSDSKVTLMTLHAAKGLEFPVVFLAGLD 580

Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
           EG++P +                L  + +   +    +         +Y  +     +  
Sbjct: 581 EGLFPHSRT--------------LMDSAQIEEERRLAYVGITRAEQYLYVTNASTRTMYG 626

Query: 711 IASRWLQ-RLLVLGGTDFFDNLKKRGQ 736
             S +L  R L     +  +  ++R +
Sbjct: 627 RVSAYLPSRFLNEIPEELMEEYRRRAE 653


>gi|121610666|ref|YP_998473.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121555306|gb|ABM59455.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
          Length = 1142

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 89/916 (9%), Positives = 228/916 (24%), Gaps = 110/916 (12%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             TLV        + +   ++ +   + +A  EL           +  +  I +      +
Sbjct: 228  RTLVRRIEGLLADGVDPTTILVLTFSNKAANELCERIAASNPVAAAAM-WIGTFHAFGLD 286

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                       L  P     RL++    I +  ++ P +    Y                
Sbjct: 287  IVRRFHDRLALLPDP-----RLIDRTEAIELLEDEFPRLDLKHYRNLWDPALDLSDMLSA 341

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            +++   +++D                 ++           +    + +   L        
Sbjct: 342  ISRAKDEVVDAAGYRALAQSMAVRAGTDQDAKVRAQKCLEVATLFEAYERLLTVHQLLDF 401

Query: 208  VGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                   +R     AE    ++     +++        A+ RL+  +    +G  +    
Sbjct: 402  GDLVALPVRLVEGSAEVRDALRARHEHVLVDEYQDVNRASVRLLKAIVG--DGRNLWVVG 459

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            D       +   +  +    + +   +   Q         L +     +R+ +V  E + 
Sbjct: 460  DARQSIYRFRGASATNIARFAIDFPGAQAAQ---------LGVNYRSDERIVDVFTE-FA 509

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            R M  S   LP   +  R T+    ++        +++ + A      A  I        
Sbjct: 510  RGMRASSGALPLKLTADRGTEGDRVELRVADSADDEISALAASITALHAQGI-------- 561

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                   A++ A       +   L   GI         L        L +LL+       
Sbjct: 562  --RYGGQAVLCASNARLNAIAEGLEARGIPALHLG--SLFERPEIKNLLALLSLATDP-- 615

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
                                     + A  +      ++   + D+  ++    A    +
Sbjct: 616  -------------------------RAAAMVRVATTARHQMPLQDVMRVIEHLRAANPAS 650

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                                L D   + ++ L T     +++    ++     +    L 
Sbjct: 651  LAWS--------AMHAEVDGLADDTREALSRLSTLFAGVSASTNPWTLLAGWTIDGLGLA 702

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--TVKP 620
                        +      + L+    +    G  +         ++    D     +  
Sbjct: 703  KTLYQADDAQSRMQGLAIWQFLNFCRRQPRGQGVPVLRLLDRIRRLVLLSEDRGLSQLPR 762

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGL-------NEGVWPKNTAKNPFLSRVMQSDLN 673
              E    + ++    S+ L FD + L G+       N                   + + 
Sbjct: 763  SAESIDAVRLMTIHGSKGLEFDAVHLPGMVTSGLPRNNVPPRCLPPDGLIHGSEGLTGIE 822

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIY--TRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
               A     +    F   +  R  +   + + + +      SR++  +        F  L
Sbjct: 823  AVKAGHDEEEECLFFVALSRARDRLLLYSYAKQADGRARSPSRFVAPIERFLARPAFVPL 882

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
            +                          P          ++  ++      P       +L
Sbjct: 883  RAG------------------PPSTGVPLSITWQGRPQWTDIQVNLFERCPRRFLYTHVL 924

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
            +L        +        + +++   L ++    +       +    +  +  +     
Sbjct: 925  RLGGRRT---ETAFMKMHNVVNDVFEWLKREHETTSP--TVDELAARFEEAWRSKG---A 976

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
             +  +   + +I    ++   + +S         P  +      I ++   D +     G
Sbjct: 977  AEHGYAEDYRRIGRRLVDFLIESRSRG-VSAPASPISLGWAEGEILVS--PDGVARGDGG 1033

Query: 912  FVDITDYKTGDNPKKE 927
             V +   KTG      
Sbjct: 1034 RVTVRRVKTGKQRSNA 1049


>gi|90415401|ref|ZP_01223335.1| DNA helicase II [marine gamma proteobacterium HTCC2207]
 gi|90332724|gb|EAS47894.1| DNA helicase II [marine gamma proteobacterium HTCC2207]
          Length = 723

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 74/709 (10%), Positives = 184/709 (25%), Gaps = 126/709 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNP-- 101
           S+     T +A +E+R    E+ G   +      + +   +      A       L    
Sbjct: 56  SILAVTFTNKAAREMRERIDELMGMSLRGMW---VGTFHGLAHRLLKAHWKD-VKLPENF 111

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            + +    L L + ++   +           +  ++                        
Sbjct: 112 QILDSDDQLRLVKRVMRSMDLDEQRWPPKQAQWWINGQKD-------------------- 151

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
           E  +   +    +             +    + + E    L         +  +    EH
Sbjct: 152 EGLRAAHIQETGDPHMAT--------MLRIYREYEEVCNRLGVIDFAELLLRALELWKEH 203

Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                  +     I++     +       +  +A   +G  V    D       W     
Sbjct: 204 PAVLDHYQQRFQHILVDEFQDTNAVQYAWLRILAGKVSG--VTAVGDDDQSIYGWRGAKV 261

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      + +                             + ++       S      + 
Sbjct: 262 ENILHYEGHFSD--------------------------THTVKLEQNYRSTSNILNAANA 295

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--KKKSALITA 394
              +N + L   +         +AL  A NE +EA  IA  L+  +++   ++ SA++  
Sbjct: 296 VISKNAERLGKSLWTDSGEGEPIALYAAFNEHDEARYIADRLQSWVNQGNLREDSAILYR 355

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   I  G      L      S L  +   +D +A   +V  P 
Sbjct: 356 SNAQSRVLEAALLQADIPYRIYGGQRFYERLEIKNALSYLRLMMNCHDDVAFERVVNVPP 415

Query: 455 AKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
              G      +       ++   R ++                            + R+ 
Sbjct: 416 RGIGDRTVETIRALAREEQISMWRASEKIVT------------------------EKRMP 451

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                   + ++ I +    L                 D  +L       +      ++ 
Sbjct: 452 GRAINAVAVFLELINEMSGQL-----------------DELELYEQAENAIQRSGLIEMH 494

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKA---NAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
                E G+       +++      +A   +       + ++      +   E    + +
Sbjct: 495 KREKGERGQARVENLEELVGACRNFEAEDKDLPILPQFLDQVALDSGDRQADEDQDAVQL 554

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L F  + + G+ E ++P   + +       +  L      + + +    F  
Sbjct: 555 MTLHSAKGLEFPLVFIAGVEENLFPHKMSLDEPGRLEEERRLAYVGITRAMQKLYLTFAE 614

Query: 691 ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD-FFDNLKKRGQCY 738
                    +RS+         SR+++ +      +    N   R   Y
Sbjct: 615 ---------SRSIYGTESFNSVSRFVRDIPKEVIEEVRLQNTISRPTSY 654


>gi|68249529|ref|YP_248641.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae
           86-028NP]
 gi|68057728|gb|AAX87981.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae
           86-028NP]
          Length = 1121

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 92/757 (12%), Positives = 191/757 (25%), Gaps = 97/757 (12%)

Query: 39  LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94
           L P        I V +    Q L+ E  + TG  + +   +P        + +   A  L
Sbjct: 24  LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
            +  L  P      +  L RLI  +  K  +    L      S          L+  +AD
Sbjct: 78  PATALENPFDKDSMMWRLIRLIPTFLEK--ENFLPLRNYLASSPHSEQYKLYQLSSKIAD 135

Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTE---- 197
           + D       +W               +   +       +      +K   + W      
Sbjct: 136 LFDQYLVYRAEWIFAWEKGEDEQITAQIRKQQPNLNDTLFEQIQGNIKWQGELWRALVVD 195

Query: 198 -RLVELNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
            +    +A+         +   A+    K     I I G      A   ++  +++  + 
Sbjct: 196 VKSDVDDATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNT--TYSTHP--------------------- 292
            +            I +   +   +             P                     
Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQNENQPLFSEEQLSQLENAQFDVTYQN 315

Query: 293 ---QYSLAKLLDFLDIKREDVKRLGNVSNEMY--GRSMVISKSFLPPDTSDMRNTDILEN 347
              Q     L  +  + R+ +  L      +     +                    LEN
Sbjct: 316 ENLQVGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIKSNSLLGQLQSQILHLEN 375

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
           K  NI K    + L    +   E   +   L    +++     K   ++ AD N      
Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPNLTPKDVVVMVADINQYTPYI 435

Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             +          I   +S      + +  S   +LL           +  L+  P  + 
Sbjct: 436 QAVFGQKNRNAPQIPFSLSDNKLSESDVLVSSYLTLLRLKESNFSAEDVLALLDIPATRE 495

Query: 458 GFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            F           E                G   +     L+ ++L     ++       
Sbjct: 496 RFNISLADLPLVREWVADSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                S   K      + +    ++ L       +      SI  W ++    L +  + 
Sbjct: 556 LGLNSSYGLKGELAGNLSYFFTALSLLHETLQQAH------SIEKWQEILTALLSDFFVQ 609

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624
                  +++ +         +++ E    +        D+I  +I     +        
Sbjct: 610 NEDTSDTIFYIQ------EKINELAEHLKMLHFTEKLQADVIADVITMKLEDAPNSLKFL 663

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           +  +     L  R + F  + L G+N+  +P+    N F           +         
Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRYL 723

Query: 685 AHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRL 719
                +     +   +   R   +N P   S  + +L
Sbjct: 724 -FLEALLAARNYCYISYIGRSITDNQPKEPSVLVSQL 759


>gi|254454814|ref|ZP_05068251.1| hypothetical protein OA238_5446 [Octadecabacter antarcticus 238]
 gi|198269220|gb|EDY93490.1| hypothetical protein OA238_5446 [Octadecabacter antarcticus 238]
          Length = 886

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 85/782 (10%), Positives = 199/782 (25%), Gaps = 46/782 (5%)

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            RL   +A   +     P           + ++  + +           P    + L   L
Sbjct: 87   RLYKHLAALCDLWRQAPAALPEDLQVYAHVLSCAAEDALEPLPLVVGDPCTFASPLEGRL 146

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI----PNIQKCFSDV 359
              +  D   L +        +          + + +                +    +  
Sbjct: 147  HAQLLDHHGLASEEFRGEWAARCAPLLIGAAEGTSLWRAQQGLTGAFIPSGPLDDTMAFF 206

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            AL +   E + A + A  +       +    L+  +     +++      GI +      
Sbjct: 207  ALRDEAEEADFAAARAQRMIDQNVSPEDIGLLVPNEVGYFAQLRRAFANVGIPLSGLPTQ 266

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
            P    +    L  LL         MA+A+L   PL  +                      
Sbjct: 267  PSRRDIAGETLLQLLLCFQAPAPAMALASLYISPLLPWPAETGLQLS------------R 314

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
            +      +  +        Q+    V     +      +        +            
Sbjct: 315  EVMKGRFEPFAARSLTGRPQRFYKLVRSNIEQSPLGVLQALEQAAQLLTDVTELREDVAA 374

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
             ++      +    ++                 P+          S  F + +   +   
Sbjct: 375  FRSKLGTMRAQLAQSRSLDWAALYRVATPTTPKPSP---------SEAFVEGVSVFTEAT 425

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                    +I   + G      +  S                  +      E        
Sbjct: 426  MPWRPARHLIAMGMSGNRWPRAVSASPLFLDGELQLLHEKTGLRV------ETRGDALAR 479

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            +   L R +       T  + +       +       L+       +     A   +  L
Sbjct: 480  RLEKLRRQLLCASGSVTLLRPVFAPNGSRQAPAAALSLVARTVGNGDKGTEGAEVLIHDL 539

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKL-DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
              L    +    +         T  + D    +  +   +     + + R  S S ++ L
Sbjct: 540  RALPRDRWPFEHRVVVASMDALTSAVPDDGVLRLGHDLLRRRLLDDGRMRPQSPSRLETL 599

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE-LIKKRINKNTPEINHLMKQ 837
            +  P A     +   + +       +    GT+ H+++     K     +  +I   + +
Sbjct: 600  MVSPLAWSLS-VFGAEPVTWAPDGLNVMVAGTIAHDVLEFLFPKDVALPDHDQIEAEVPE 658

Query: 838  IIDSHFEKENLP--PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
            ++ S   K        I  + R    +   +         + ++   ++    +  E++G
Sbjct: 659  LLASAIRKYAPFLQRSIWAVEREGLLRDIRTAAHAWRNTLAGLDARVIDNEIGLQGEALG 718

Query: 896  IHLTGFADRIDLLKSGFVDITDY-KTGDNPKKETAQKLIDPQLSLEAAALKA-------- 946
            I L G AD +  L  G + + D+ K+G   ++   +   D QL L    LK         
Sbjct: 719  ILLRGRADCLLQLADGSLLVVDHKKSGTPKRRARLEAGWDLQLGLYREMLKRPEKTGEVL 778

Query: 947  -GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
              + +      VA           +              E+S +++  LI+ +  ++ G 
Sbjct: 779  EAALAGNPKIGVAYHLINDQGVLLEGLEPPAGVVTVVDGEISAQAMDLLIKRLAEVEAGM 838

Query: 1006 QP 1007
              
Sbjct: 839  IG 840


>gi|323138753|ref|ZP_08073818.1| hypothetical protein Met49242DRAFT_3206 [Methylocystis sp. ATCC
            49242]
 gi|322396000|gb|EFX98536.1| hypothetical protein Met49242DRAFT_3206 [Methylocystis sp. ATCC
            49242]
          Length = 884

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 81/745 (10%), Positives = 186/745 (24%), Gaps = 93/745 (12%)

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
              +   +  I   +     S     D     +         ++ + A     EA+     
Sbjct: 166  PLLQALTAHIPVQWTAGPRSIPAWLDGTGVTVARAPAQTPRISAVSAATAYHEAVEAMRW 225

Query: 378  LRMSLDENKKKSALITADRNLARRVKLELT---RFGINIDISAGIPLSTTLHSSILTSLL 434
             R  L      S +  A  + A      L       I++    G+   TT       +L 
Sbjct: 226  ARSLLATGVSPSEIAIATASPADYDDHFLALRADANIDLHFVHGVRTVTTREGQAAAALA 285

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            + + +      +  L                           R +     + +    VL 
Sbjct: 286  DIVVRGLSQSRLRRLAA-----------------------LCRDSGPFETLPEGWLRVLP 322

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
              A            +RL  ED       V  +   +  L                    
Sbjct: 323  TDAPLSTLGTWNRLLARLMAEDWPDGADHVSALRTAVATLAKGPDAAGEIGEAFLKGRAL 382

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
             +    L                +++G       + +    S + A+   ++ ++     
Sbjct: 383  AIWRKALLAGPAASLDATLETLKQDDGLEACVCVAWMP--ASALAASPRRFVRLLG---L 437

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              +  P+      L     + + +L+   + L    +      T  +  +    + D + 
Sbjct: 438  NSSRWPRGIAEDRLIPDHIIPTPVLDPLPVNLADRRDFETILATTADTVVLSRARRDSDG 497

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            +   +    A                R+    +  +   R + R             +  
Sbjct: 498  RLLGRSPLLAGMG-------GETYLRRNATPRHACSETDRLMARPQEFAADPQAVGAQGC 550

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
             + +          T      R      L    RT S S +++L+ +P +          
Sbjct: 551  WRDWRKA-----EITPHDGLVRADHPLVLAILSRTQSASSLRRLLRNPLSFVWVYAFGWR 605

Query: 795  FIPHFKKDP--DRTDRGTLFHNIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLP 849
                  +    D    G L H ++   +++        + ++  +   +  +        
Sbjct: 606  EPQSSAEPLVLDALGIGDLVHMVLDRALRELETGGGLVSADMEAIEAAVAQAAQAVAADW 665

Query: 850  PHIDIIWRHLF-------HKISHSFLEHEEKIQSSIEKIFVNIPAK-------------- 888
                 +   +         ++                + +  +P                
Sbjct: 666  ESERPVPPAVIWGRTLDDARVMAGRALSYGDDLLPGARSYGEVPFGGSEPKSDAETPWDA 725

Query: 889  ---MAIESIGIHLTGFADRIDLLKSG-FVDITDYKTGDNPKKE-TAQKLIDPQLSLEAAA 943
               + I   G ++ G+ DR+D+   G    + DYKTG  P+ +       + Q  L A A
Sbjct: 726  STPVTIPDTGFNIAGYIDRLDISGDGKRALVRDYKTGRPPRGDVRLNGGRELQRCLYAFA 785

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
            +KA     +            +           D +    + +  +        +T    
Sbjct: 786  VKALLGDDVA-----------ISASLLYPREPVDLQLDDPEAVLSE--------ITGYLR 826

Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLA 1028
              +  ++        +   +YD LA
Sbjct: 827  AARASLAGGAALPGPDTGGDYDDLA 851


>gi|39935284|ref|NP_947560.1| ATP-dependent exodeoxyribonuclease subunit A [Rhodopseudomonas
            palustris CGA009]
 gi|39649136|emb|CAE27656.1| possible ATP-dependent exodeoxyribonuclease (subunit A)
            [Rhodopseudomonas palustris CGA009]
          Length = 1133

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 79/789 (10%), Positives = 183/789 (23%), Gaps = 69/789 (8%)

Query: 192  SKYWTERLVELNASSPVGYQIALMRAE--AEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
             + +     +L+    +     L+R        +      +++     + P    +   +
Sbjct: 349  FRDYKRSAAQLDFDDLIFAARDLLRDHDDVRRSLATRFAHVLVDEFQDTDPLQTEIFWRL 408

Query: 250  ANHPNGAI--------------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
               P   +              +    D       +      +             P+  
Sbjct: 409  CGEPPAGVASADWSAFTIRPGALFLVGDPKQAIYRFRGADVSAYVRARDAYLAQD-PESV 467

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
            LA   +F                 +         +  P          +    +    + 
Sbjct: 468  LAISTNFRSCAPILTYVNDRFEALLSSEGQPGFTALDPFHADRGEALCVAALDVAVADEN 527

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDE--------------NKKKSALITADRNLARR 401
                A         EA +IA      +                     AL+    +   R
Sbjct: 528  GKASA---EQQRDGEADAIAQMCARLIGGEMILDRRSGASRPCRPGDIALLAPTGSDLWR 584

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
             +  L R GI +   AG  L        L +L   +    D +A+  L++ PL      E
Sbjct: 585  YEEALERHGIPVATQAGKGLFRRQEIQDLIALTRVLADRRDTLALGALLRGPLVGLTEEE 644

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                                    ++L+  +   +A     T    ++   S    +L  
Sbjct: 645  LLDIIWALPRAEDDPERLPRLDLGVELEH-IAHPLARSTIETLQALYRQTNSTTPHDLLS 703

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
              +D +      L  ++        N+ +     LT +            +   W +E  
Sbjct: 704  QAIDALRVRPILLERHRGQAERALANVDLY--LSLTTSFAVRGLRAFAETMTAAWTDEA- 760

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            + +        E  +    +A + ++                      ++       +  
Sbjct: 761  RAVEGRPDAQEEAVALYTMHAAKGLEWP-------------------IVVPINTMTGIMA 801

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
                +   +   +         +      D   + AE    +    +  A   R L+   
Sbjct: 802  PESAVTDRDSDTFYCPVFGVKPVGYDAARDA--EKAELDRERIRLWYVAATRARELLVL- 858

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
               +      A   L  L +        +               D T             
Sbjct: 859  PRLDAAQSKSAWISLLDLSLAELPALDLSHLPPELDLAAGGEANDQTRD-DFAAEAASIV 917

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP------DRTDRGTLFHNI 815
              + +    + S  +          A  I           +          +RG + H +
Sbjct: 918  ARQRRLIWLAPSRDESADGPVLTPEAAEIWAASEAGQPDDEAVRPNVQGGRERGLILHKL 977

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
            + E++      +   ++   + +I          P   +    L   +  +    E    
Sbjct: 978  LEEVLTGETPDDAGALSERARALIGEIGRPVMADPSQGLSPDELAGCVVRTLALPEIAEL 1037

Query: 876  SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF-VDITDYKTGDNPKKETAQKLID 934
                   + + A + ++ +     G AD      +G    + D+K+   P          
Sbjct: 1038 RPTLVPELAVYAAVDVDGVEQATVGIADATSFDIAGKPTVVIDWKSDVQPT-AETLNHYR 1096

Query: 935  PQLSLEAAA 943
             Q+      
Sbjct: 1097 AQVRAYLDM 1105


>gi|322435329|ref|YP_004217541.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
 gi|321163056|gb|ADW68761.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
          Length = 1165

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/799 (10%), Positives = 182/799 (22%), Gaps = 119/799 (14%)

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG--AI 257
             EL   +    +     ++           +++     +  +   L+  +  H +G    
Sbjct: 402  AELGLLARAALRNTSAVSDLAQATGQNLQHLLVDEMQDTSTSQYELIQLLTQHWDGSSQT 461

Query: 258  VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ--------YSLAKLLDFLDIKRED 309
            V    D      ++     +    T  + T    P         +     L     +   
Sbjct: 462  VFLVGDPKQSIYLFRQARVERFVNTMHSRTLGDVPLGVLNLTANFRSQSTLVENFNQDFG 521

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            +      S      S   +    P      R          +     +     +      
Sbjct: 522  LLFPTLASGNPSEVSYTPAIPRRPATQHAAREWHPTPIPYTDDTNTRTTQTTRQRRQTAT 581

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
            E   +A A   + D   + + L+    +L   V        +        PL        
Sbjct: 582  EIRDLAAAWL-ARDHTARLAVLVRNRSHLIEVVAAFKQSPAVPFRAIQIEPLRERQEILD 640

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
            L +L  A+    D  A   L++ P       + +L    +                    
Sbjct: 641  LLTLTRALLHPADRTAWLALLRTPWCGLTLTDLHLLTGADD------------------- 681

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
                               ++ +         LL D  +  + P+    +   +  G L 
Sbjct: 682  ---------------PTLARTSIIHLIATRGDLLSDDGIARLEPVWQILSAALAQRGRLP 726

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
            IS W + T                        +   +   + +     +++        +
Sbjct: 727  ISQWIERTWRSFNAPA-------------FSTQEELANIDQYLTLLDQLESPGNTLDLTL 773

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
                  +           + ++    ++ L +D + +  L        +    +L     
Sbjct: 774  LDQRLSKLYAAPAVHPGAVDLMTMHGAKGLEWDAVFVPALERTGANNRSRLLSWLEVDGT 833

Query: 670  SDLN----------------------------LKTAEKYIGQAAHDFEMANGTRHLIYTR 701
             DL+                            +++A +   +    +      R  ++  
Sbjct: 834  PDLDDDTIAHGILAPIQSKGTASQQLNTWMRSIESAREAAERKRLFYVACTRAREELHLF 893

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
            +          S     LL        D+        +    +            P+   
Sbjct: 894  ASPVAKQDGTLSIPPASLLASAWPAAEDHFHPPAAQLIVMPTQPQILDSLAAAAAPRTIL 953

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
             +   P     +         +                +        G   H  + +L  
Sbjct: 954  RIPLSPIELIPTPEPTQPQTLF-------------DRPEGSFASRAFGNTVHAFLDQLAA 1000

Query: 822  KRINKNTPEINHLMK-----QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
            +    +TP            +I          P  ID     +   + ++  + + +   
Sbjct: 1001 RIAAGDTPAQLTTELPQWSPRIAQLLRASGLPPTTIDRFAPRVLTALYNTLTDPDGQWLL 1060

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG-------FVDITDYKT----GDNPK 925
            +         A ++ +     +    DR  L              I DYKT    G    
Sbjct: 1061 AAHPNATTESALVSWDETRTSI--RMDRTFLAGDSPQTTASTHQWIIDYKTADLGGRTES 1118

Query: 926  K--ETAQKLIDPQLSLEAA 942
                  ++   PQL   AA
Sbjct: 1119 TFLAEEKQNYAPQLEAYAA 1137


>gi|300703480|ref|YP_003745082.1| DNA helicase II [Ralstonia solanacearum CFBP2957]
 gi|299071143|emb|CBJ42456.1| DNA helicase II [Ralstonia solanacearum CFBP2957]
          Length = 791

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/727 (9%), Positives = 178/727 (24%), Gaps = 84/727 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
           + V     T +A +E+ +    +     ++     I +   +      A    +      
Sbjct: 53  SGVLAVTFTNKAAKEMTARLSAMLPINTRAMW---IGTFHGLCNRLLRAHYRDAG----- 104

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +    ++L+    +   +  L  +  D     P ++                 I+  + +
Sbjct: 105 LPQTFQILDTQDQLSAVKRLLKSLNIDDEKFPPKNVQY--------------FINGAKEQ 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE---- 218
             +  DL                  +      +  +             +          
Sbjct: 151 GLRAGDLEIANEFDRR---------MADLYAAYDAQCQREGVVDFAELLLRCYELLRYND 201

Query: 219 -AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI----VLPGLDCHIPTAIWNT 273
                 +     I++     +       +  +A      +    +    D       +  
Sbjct: 202 AIRAHYQRRFKHILVDEFQDTNRLQYAWLKILAGLGEPGVAPNAIFAVGDDDQSIYAFRG 261

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
               +                        L+        + + +N +   +         
Sbjct: 262 ANVGNMVDFEREFRVE---------HRIKLEQNYRSHGNILDTANHLIAHN--------- 303

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSAL 391
                   T  L   +         V + ++  + +EA  I   +R  +     + + A+
Sbjct: 304 --------TRRLGKNLRTDAGLGEPVRVYQSATDGQEAGWIVDEIRERIASGTARSEIAI 355

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +      +R ++  L   GI   +  G+            + L  +  +++  A   +V 
Sbjct: 356 LYRSNAQSRVIEHSLFSVGIPYKVYGGLRFFERAEIKHALAYLQLLENVDNDAAFGRVVN 415

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P    G     L +    L   +L  +           L       ++           
Sbjct: 416 FPARGVGARSLELLQDAARLYGASLAASVPYLTGAAGTKLAAFVRLIEQMRADTRQMTLP 475

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
              +    A  L+ H       L   +  +       +              +      +
Sbjct: 476 EIVQHVIHASGLITHYQGEKEGLDRIENLQELVTAAQAF---VAEEGYGADAIATALPVR 532

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              +   E G+T   + ++++   + ++   +        L  G+           + ++
Sbjct: 533 HDAMLRIEGGETDGDVVAELVAGEAPMEMTPLVAFLTHASLEAGD--NQAQAGQDAVQLM 590

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + + GL EG++P   +         +  L      +   +    F   
Sbjct: 591 TVHAAKGLEFHVVFITGLEEGLFPHENSLQDTDGLEEERRLMYVAITRARERLYLSFAQ- 649

Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
                   +R L       I SR+   L                        + D    +
Sbjct: 650 --------SRVLHGQIRYHIRSRFFDELPEATLKWLTPQHAGYSPTRRAQGAQGDNAWGR 701

Query: 752 PHYKRPK 758
             +KRP+
Sbjct: 702 DWFKRPE 708


>gi|317132410|ref|YP_004091724.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3]
 gi|315470389|gb|ADU26993.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3]
          Length = 1186

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 89/861 (10%), Positives = 207/861 (24%), Gaps = 100/861 (11%)

Query: 160  ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE- 218
                   E L  L    +          +K     +  +  E         +   +R   
Sbjct: 326  AEYRVDVERLRPLAESLF--------GVVKELDSRFYAKKAEKGILDFGDLERLALRLLR 377

Query: 219  --------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
                    A + +      +++       PA   +   V+       +    D       
Sbjct: 378  GKDGSPTPAAYAVAAQFEEVLVDEYQDVNPAQDAIFRAVSREEQN--LFMVGDVKQSIYR 435

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
            +   T +         +      Y    +   L         +    N ++G+ M     
Sbjct: 436  FRKATPELFIEKKETFSPYDGHTYPARIV---LGRNFRSRAGVAEAVNFVFGQLMSRELG 492

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD------NEREEAISIAIALRMSLDE 384
             +     +      +    P  +  F+   +  A       N   EA  +A  +   L E
Sbjct: 493  GIDYGEEERMTPAAVYFDRPGNEADFALHLVETAAYDENDDNAMLEARYVARTVARMLRE 552

Query: 385  NK--------------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
                                L+     LA+     L   G+            +   +++
Sbjct: 553  GYTVQGAGGPRSVVCKDFCILLRGANRLAQTYVDALKEEGLPAYADIAGGYLGSYEVAVM 612

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             +LL  +      + + +++  P+  F   +    R ++    + L     +       +
Sbjct: 613  LALLRVLDNPLQDIPLLSVMLSPVFGFSPDDLAGLRLEHPKGHLYLAVLARAKAEGGHFA 672

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
              ++ +   +    V      +    +  A L +   +                  +   
Sbjct: 673  AFVEMLDDLRRLAAVLPSDRLILRVYESTAFLDICTAMPGGAGRRANLRLLLDYARSYEA 732

Query: 551  SDW--TKLTVTCLQNVCLDEHRKLPNLWFEEEGKT--------------------LSSLF 588
            + +      V  +  V  D      +   E+                        L   F
Sbjct: 733  AGFRGLAGFVRFVDRVAEDADLPPASTVSEDADVVRVMSIHKSKGLEFPVCIVAGLGRRF 792

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            ++       +      +   +       +          + I     S       L +  
Sbjct: 793  NREDSRRGTLFHPEYGFGSYLRD--PALSCHVTTLPREVVRIETERGSMAEEMRVLYVAM 850

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
                      A  P   + + S   L   +          +  N    L+       +  
Sbjct: 851  TRAKEKLICVAAVPTAEKAVASAAALLRPDGAGIVPFAAMQAPNFMAWLLACVLRHPSCG 910

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQ----CYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
               A   L+ L +L      + +  + +       D  ++      +      +      
Sbjct: 911  CLRALAGLEELSILSTAHSMEPVIAQAEGACKTAPDVEQETPQPVDEELLAEIRRRIAFV 970

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
                  +    K  +++       R   +      +       +GT  H  +  L     
Sbjct: 971  YPHEPLTRLPSKLAVSEIAEERLHRDFGVRRPSFVQAGLSAAQKGTALHTFMQ-LADLAN 1029

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
              +T ++    ++++ S      LP     +          + L          E+I+  
Sbjct: 1030 LHSTEDVAAEARRLVKSA---HLLPEEGKAVDAAQVLAFLETPL---FARLRRAERIWKE 1083

Query: 885  IPAKMAIESIG---------------------IHLTGFADRIDLLKSGFVDITDYKTGDN 923
            +   + +                         I L G AD +  ++ G   I DYKT   
Sbjct: 1084 LRFNLTVSPDELSGMGMDVPAPTNTALDVRAQIVLQGMAD-VVWVEDGRYFILDYKTDHA 1142

Query: 924  PKKETAQKLIDPQLSLEAAAL 944
               +  +     QL+L A A+
Sbjct: 1143 -GADELRARYAGQLALYARAV 1162


>gi|171779530|ref|ZP_02920494.1| hypothetical protein STRINF_01375 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282147|gb|EDT47578.1| hypothetical protein STRINF_01375 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 783

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 88/694 (12%), Positives = 201/694 (28%), Gaps = 120/694 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R   + +    +  L  I +   +       D       N     
Sbjct: 67  NILAITFTNKAAREMRERAMALNPATADTL--IATFHSMCVRILRRD-ADHIGYNRNFTI 123

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++             L P+       +    I  AKN  D++D I  E
Sbjct: 124 VDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLLDEIAYE 170

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            +  +    +                    K +   L +  A       +  +R   ++ 
Sbjct: 171 NQAGDMYTQIV---------------AKCYKAYQAELRQSEAMDFDDLIMLTLRLFDQNP 215

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 216 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 273

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  +  L +     ++ ++    V N    R              
Sbjct: 274 NILDFEK-----DYPEAKVVMLEENYRSTKKILQAANAVINNNRNRRPK----------- 317

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
                     K+         +    A +EREEA+ +A  +   + E     K  A++  
Sbjct: 318 ----------KLWTQNTDGEQIVYYRARDEREEAVFVASTIDNIVREQGKNFKDFAVLYR 367

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + S LN I    D ++   +V  P 
Sbjct: 368 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNVIANTADNISYERIVNEPK 427

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                  G      I D  +L    +     N  +   + + ++
Sbjct: 428 RGV--------------------GPGTLEKIRDFANLQNMSLLDASANIMLSGVKGKAAQ 467

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
              +LA L           L+  +T+ +       +      T         +       
Sbjct: 468 AVWDLANL-----------LMNLRTDLDKYSVTELVETVLDKTGYLDALRVQNTLESQAR 516

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   +E  T++  F +  +     ++   +    +  L           +++ + ++   
Sbjct: 517 IENIKEFLTVTKNFDENQDDAPEDESGIDKLSRFLNDLALIADTDDGNAETAEVTLMTLH 576

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P + A               +  ++   +    +      
Sbjct: 577 AAKGLEFPIVFLIGMEEGVFPLSRA--------------AEDQDELEEERRLAYVGITRA 622

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723
             L++     TR+L         SR+++ +    
Sbjct: 623 EQLLFVTNANTRTLFGKTSYNRPSRFIREIDDEL 656


>gi|327395042|dbj|BAK12464.1| exodeoxyribonuclease V gamma chain RecC [Pantoea ananatis AJ13355]
          Length = 1125

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 114/974 (11%), Positives = 239/974 (24%), Gaps = 126/974 (12%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            LL        + DPL+    AS  + V +    Q L+ E     G  + I      L  
Sbjct: 11  DLLKSLAARVIKLDPLD-DPFASEMVLVQSPGMAQWLQMELAHTFGIAANIE---FPLPA 66

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
               +    +L    +    S      +L   +      L    +       LS      
Sbjct: 67  SFIWEMFVRVLPDIPVESAFSKASMSWKLMHRLPS----LLLQDEFASLRHYLSDDGDKR 122

Query: 144 NAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
               L+  +AD+ D        W    E    +        W  A          +TE L
Sbjct: 123 KLFQLSARVADLFDQYLVYRADWLNSWERGQHIDGLGDAQIWQAALW---RDLVNYTEEL 179

Query: 200 VELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
            +             +    +           + I G +   P   + +  +  H +  +
Sbjct: 180 GQPKW-HRANLYARFIHTLEQTQTPPANLPERVFICGISALPPVYLQALQALGRHIDIYL 238

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------------------HPQYSLAK 298
           +           I +                                       Q     
Sbjct: 239 LFTNPCRDYWGDIQDYAFLAKLQSRQRRRHDREEYRGLFSDVARAPALFSDEGEQQLTNP 298

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI--------- 349
           LL        D   L +  +        +         S   +   L++K          
Sbjct: 299 LLASWGKLGRDNLYLLSQMDLNSEIDAFVDVEEDNLLHSMQHDLLNLQDKAVIGLTADEL 358

Query: 350 ------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLA 399
                   +      +A+    + + E   +   L   ++ +     +   ++ AD +  
Sbjct: 359 AYSGQKRCLDPADRSIAIQVCHSAQREVEVLQDHLLARMEADPGLKARDIIVMVADIDAY 418

Query: 400 RRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                 +         +   IS                LL           +  L+  P 
Sbjct: 419 APFIQAVFANAPAERYLPFAISDRRASQAHPAIVAFLHLLALPDSRFVSEDVLALLDVPA 478

Query: 455 AKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-----------SLVLDRIATQKN 501
               F   E  L   +  +    +R   +   +  L             L    +     
Sbjct: 479 LANHFSIDESGLRLLRRWVSESGVRWGLDDASVEALALPVTGQHTWRFGLQRMLLGYAME 538

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
           + H         +E   L   L  H+ + ++ L  ++           +  W  L    L
Sbjct: 539 SQHGDWQGILPYDESSGLVAELAGHLAELLSRLNHWR---QVLSEPRPLEAWLPLCRELL 595

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                 +      L   E  +   +L    ++         +   D +   +D + +  +
Sbjct: 596 NAFFTADPETEAALLLVE--EQWKALIEYGMDARFDEPIPVVLLRDDLRGRLDQQRISQR 653

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 +     +  R + F  + L G+N+GV+P+  A   F     QS    ++     
Sbjct: 654 FLAG-QINFCTLMPMRSIPFSVVCLLGMNDGVYPRTLAPLGFDLMQQQSRKGDRSRRDDD 712

Query: 682 GQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGG------TDFFDNLKK 733
                   + +  + L  +   R  ++N     S  +  LL   G       D   +L +
Sbjct: 713 RYL-FLEALISAQQQLYISYIGRAIQDNTERYPSVLVTELLEYIGQSFYLPGDEDQDLDE 771

Query: 734 RGQCYLDWTRKLDY------------------TTKQPHYKR----PKPFPPLEAQPRTYS 771
             +        L                      +     R    P+P            
Sbjct: 772 SARRVRAHLEHLHSRMPFAPENFQPASAAHSFAREWLPAARGTGQPQPDFVQPLLTPPVE 831

Query: 772 FSEIKQLI---NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              ++Q +     P   + ++ L + F     +  D         + +          N 
Sbjct: 832 TLALEQFLRFWRHPVRAWFQQRLGVSFWLEENELLDSEPFAL---DSLERYQINAQLLNA 888

Query: 829 PEINHLMKQIIDSHFEKENLPPHI--DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                   ++   H    NLP     ++ W+    ++     +   +             
Sbjct: 889 LVTGEDTDRLYAHHRAAGNLPYGAFGELFWQAQREEMQEVAADVTSQRSEG-------ES 941

Query: 887 AKMAIESIGIHLTG 900
            ++ ++  G+ L+G
Sbjct: 942 WEINLDLDGVSLSG 955


>gi|221124374|ref|XP_002163232.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 815

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/699 (9%), Positives = 159/699 (22%), Gaps = 97/699 (13%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-- 102
           +     T +A +E+ +    +     +      I +   +      A    +  L     
Sbjct: 64  ILAVTFTNKAAKEMMTRLSAMLPVNVRGMW---IGTFHGLCNRFLRAHFK-NAGLPQAFQ 119

Query: 103 -VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            +    +L  + RL   ++                                   I   + 
Sbjct: 120 ILDTQDQLSAIKRLCKQYKIDDERFPPKQMAW---------------------FIGNCKE 158

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
           E  + +D+ A   +            ++I  + + ++             +       ++
Sbjct: 159 EGLRPKDVVASDPD--------TRKKIEI-YQLYEDQCQREGVVDFGELMLRSFELLRDN 209

Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI------VLPGLDCHIPTAI 270
                  +     I+I     +       +  +A    G        VL   D       
Sbjct: 210 APIREHYQRRFRHILIDEFQDTNKLQYAWIKMIAGVGQGGSDAGAGSVLAVGDDDQSIYA 269

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
           +      +                                        ++       S  
Sbjct: 270 FRGARVGNMTDFVREFAVRQQI--------------------------KLEQNYRSYSNI 303

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKK 388
               +     N+  L   +   Q     V + EA ++  EA  +   ++  + +   + +
Sbjct: 304 LDSANALISHNSRRLGKNLRTDQGAGEPVRVYEAPSDFAEAQWMVDEMKQLIRDDVPRSE 363

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            A++      +R ++  L   GI   +  G+            + L  +   ND  +   
Sbjct: 364 IAVLYRSNAQSRVIETGLFNAGIPYRVYGGLRFFERAEIKHALAYLRLLENPNDDTSFLR 423

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
           +V  P    G       +        +L    ++        +                 
Sbjct: 424 VVNFPARGIGARSIEQLQDLARATGCSLHDAVSTLTGRPGAVIAGFVAKLDVMREQTADL 483

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
             +   +       L++H           +          S     +        +    
Sbjct: 484 NLKDIIKLMLEHSGLLEHYRNEREGEDRVENLDELVNAAESFV-MQEGFGREAPGMAPLV 542

Query: 569 HRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                 L      + LS    +   +               +T                 
Sbjct: 543 SSPEALLSQSPASQGLSGEALETAPDEFGDTGETLSPLQAFLTHAALEAGDNMAAAGQDA 602

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
           + ++    S+ L FD + + G+ E           F      SD +    E+ +   A  
Sbjct: 603 IQLMTVHSSKGLEFDCVFITGMEE---------GLFPHENSMSDHDGLEEERRLAYVA-- 651

Query: 688 FEMANGTRHLIYTRSL----RENNIPTIASRWLQRLLVL 722
             +    + L  + S            + SR+   L   
Sbjct: 652 --ITRARKRLYLSHSQTRMLHGQTRYNLKSRFFDELPEE 688


>gi|291514124|emb|CBK63334.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Alistipes shahii WAL
            8301]
          Length = 1042

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 101/786 (12%), Positives = 209/786 (26%), Gaps = 71/786 (9%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPA 241
              A   +     +  R   ++ +    Y + L+  E     ++ +   +++       P 
Sbjct: 289  RLAADWRRDYADYKRRNRLIDFNDMERYSVQLLDLEEVARDIRKSTRLVLVDEFQDCSPI 348

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
              RL   ++        +   D       +     +     +   +       +      
Sbjct: 349  EIRLFDRLSEI--VEESVWVGDTKQSIYGFRGSNAEMIETVTQQFSEDAAQPNAAGCFRT 406

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             L       ++L   +N ++      + +  P    +   +             F  V  
Sbjct: 407  SLPKSYRSREKLVRAANAVFTPIFGPAAALEPHHGEEGVESVPPLELWQVGGDFFEGV-- 464

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
                     A  +   +R  L       A++    +    +   L   GI +  +A   +
Sbjct: 465  ---------ADGVEALIR--LGVAPGDIAILARRNDQVDALAGSLRNRGIPVA-TAETAI 512

Query: 422  STTLHSSIL--TSLLNAIFKLNDFMAIATLV-KHPLAKFGFPEKYLSRAKNALELVALRG 478
               L   +L        +       AI  L+   P+ +                 +    
Sbjct: 513  GDYLEVQLLVALLNYAVLHDDFSKAAILALLADCPVDELLERRLDYLADPGDSRWLEEDD 572

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                 D +  ++         ++      +++R++      A     H+   +     Y+
Sbjct: 573  LFRKIDRVIDRNRQQSISGFVESLIVELDFENRINRWSGPEAARRRAHLDSVLALAADYE 632

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
            T    T G             CL+   + E     + W       LS   SK +E     
Sbjct: 633  TQAAQTGGAS-----LGGFARCLEQGQMTERPFEKDPW---AVSVLSYHKSKGLEWKHV- 683

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                     I+T L      +   +    + +    +S   +   LI    N        
Sbjct: 684  ---------ILTGLERDYRKRLFAQDLFEVQLHRAADSDGGDARRLISLFPNLFGASSVP 734

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQ--AAHDFEMANGTRHLIYTR----SLRENNIPTIA 712
                 L   ++  L+ + A++ +G+  A   +      R  +       S R       +
Sbjct: 735  R---CLEDQLRELLHYEAADRRVGREEARLLYVGFTRARDQLIAVQPLKSARNGTTTPQS 791

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              WL ++        +    +              T  +P        P    Q     +
Sbjct: 792  LEWLIQVGAATNERMWHAWNEPIPIRPFVGAAASRTAVEPPTAERYLRPEPPVQTPELRY 851

Query: 773  SEIKQLINDPYAVY---ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             +  QL  DP                      +    + GT  HNI+        +  + 
Sbjct: 852  LQPSQLAADPNRKPEVTLVADRGARIELRAGAETPMAEIGTTLHNIL-----ALCSPGSE 906

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
             +    +QI+  H  +  +P             ++       E+      KI+   P +M
Sbjct: 907  NVTGRARQILGRHGMETVVPHPEQ------IGAMAEWLFGWLEREYGPARKIWHERPIRM 960

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKT--G-----DNPKKETAQKLIDPQLSLEAA 942
                    L G  D +     G V + D+K+  G      NP  E       PQL+    
Sbjct: 961  WCNGQE--LNGSIDLVWETDHGCV-VVDFKSFPGTREAVTNPSGEHFAGRYAPQLTAYRR 1017

Query: 943  ALKAGS 948
             L+A  
Sbjct: 1018 VLEAAG 1023


>gi|269977489|ref|ZP_06184461.1| UvrD/REP helicase [Mobiluncus mulieris 28-1]
 gi|269934405|gb|EEZ90967.1| UvrD/REP helicase [Mobiluncus mulieris 28-1]
          Length = 1213

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 95/951 (9%), Positives = 253/951 (26%), Gaps = 183/951 (19%)

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATAR 244
               + +  R  +L  +        ++             +     +++     +  A  +
Sbjct: 320  EVIRAFNTRKAQLRFADFSDQTREVVELLKKVANISQSYQQRYQLVLLDEFQDTSVAQLK 379

Query: 245  LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
             +S +  +     V    D +     W   +  S        + +     SL      L 
Sbjct: 380  YLSALFRN---HAVTAVGDPNQAIYAWRGASAASIEEFPKYFSDNPSKVASL-----TLR 431

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV-ALIE 363
                +          +   +  I+      + ++ +N + +   +        D+  +  
Sbjct: 432  TSWRN-------DAAILNVANCIASEIAEQNRTEGKNENFIMPDLSLRPGASPDLGRVYG 484

Query: 364  AD--NEREEAISIAIALRMSLDENKK---------------------KSALITADRNLAR 400
            A    + +EA ++A  L     + ++                      +A++   +++  
Sbjct: 485  APFLTDTDEAQAVANFLENWRKDLEQAVEKTAAWQAAGRVGQPPSLPTAAVLCRKKSIML 544

Query: 401  RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
             +  EL+R GI   + A           ++ + LN +    +  +               
Sbjct: 545  PILRELSRRGIPFQLQARESALLDPGVVLVRAALNVVVNPQNSGS-----------LLLL 593

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                  ++  LE ++    +      +                     +S++     +  
Sbjct: 594  LNRFRLSREDLEAISKAAGRTGLPFQE-------------------VMKSQIGASVSQPG 634

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
               +  + + I  L  + +           +    L           E R     + EE 
Sbjct: 635  RERLAILREIIAKLEKHVSYATPLQMAKLAAKLLGL---------DIEQRIPGTPYQEEA 685

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
                 S+      +G       +EW+D+            +   +  + ++    ++ L 
Sbjct: 686  FTIFLSIIEDFERSGQATLRAFLEWLDVAESEEKEVGQFQEAVDTKKVQVITVHAAKGLE 745

Query: 641  FDTLILGGLNEGVWPKNTAKNPF-----LSRVMQ-------------SDLNLKTAEKYIG 682
            +D + + GL+EG +P N  +        L   ++               L  K   +   
Sbjct: 746  WDYVAVPGLSEGNFPDNRTEIWLKNYFVLPYPLRGDRDSLPQYEINLRQLGEKDRSRKFL 805

Query: 683  QAAHDFEMANGTRH------LIYTRSLRE-----------NNIPTIASRWLQRLLVLGGT 725
            +        +  +       + +TR+              N        + + LL     
Sbjct: 806  EQYDGVRTLHHLKEEANLAYVAFTRAKSHLFLSMSWFKGCNVNTAKPGAFFRVLLGEDAK 865

Query: 726  DFFDNLKKRG---------QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
             F      +G             DW   ++    +P    P          +  S+ ++ 
Sbjct: 866  LFCMEKPNKGMTLVNSQEFMHLPDWLGDINPCFTEPEEANPNVQEFEAGLWQAPSWLDLP 925

Query: 777  QLINDPYAVY---------ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
                 P              + +      P   +  +    G+L   +       R   +
Sbjct: 926  PESIRPETFPWDVAGLQRSYQMVTVAAENPPDSQALESAIPGSLSWRVWKLYNAPRPRLD 985

Query: 828  TPEINHL--------MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE---------- 869
            +  +           + +  D    ++  P  +          I H+++           
Sbjct: 986  SSTLLRQIAATSVVKLDESSDDFMLQKLRPLPLPPSPAARLGIIMHAWIAQQLGQPTLDI 1045

Query: 870  ----------------------HEEKIQSSIEKIF-VNIPAKMAIESI--GIHLTGFADR 904
                                   E       + +  +     + +     G  +    D 
Sbjct: 1046 PDGSEATLDADSRLKLDCYRQTWENLQFLKGKAVMDIEHSGSLVVGEGTEGFEVPLRIDA 1105

Query: 905  IDLLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            +   +S G   I D+KT  +P     ++ +  QL +        +  ++D + +    Y+
Sbjct: 1106 VFQERSCGTTWIVDWKTASHPNPPEYERYLH-QLGIYRL-YWLQTHPELDSQDI-QCAYV 1162

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014
             LK+      +   +      ++ + + + L +++   +     F+S   L
Sbjct: 1163 YLKEGETEHQVLTLESILEHLKMPDYTPEYLYKLLKRGETEATEFLSQKNL 1213


>gi|213965852|ref|ZP_03394043.1| ATP-dependent DNA helicase [Corynebacterium amycolatum SK46]
 gi|213951430|gb|EEB62821.1| ATP-dependent DNA helicase [Corynebacterium amycolatum SK46]
          Length = 1164

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/711 (11%), Positives = 194/711 (27%), Gaps = 92/711 (12%)

Query: 46  SVTIYVPTKRAIQEL-------RSEFIEITGKKSTILPII------KSLGDVVEEKFTAD 92
            V     T++A +EL        +        ++   P +       +   +  + + ++
Sbjct: 69  EVLGLTFTRKAARELGVRIRQQLNALASSAAFRAQASPEVLASLEVIAPTTLTYDAYASE 128

Query: 93  LLLSYNLNPPVSNIQRLLELA---RLILIWRNKLPDIIKDLYPESPLSLPISPANAIW-- 147
           ++ +Y L  P      +++ A   +L       + +I  D+ P +  S  I   + I   
Sbjct: 129 VVSNYGLLLPTEPGVTIMDGATQWQLAWETARNVTEIDVDIAPSTLASRIIELGSNIDSN 188

Query: 148 ------LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 + +     I  IE   +K +    + + +  +        +    +    R  E
Sbjct: 189 LSSPQAIREETEAFISNIEQTPQKGKREGLIGDLQGIVDKQRERLEILPLVEQVRARCNE 248

Query: 202 LNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            N ++         R   +        +     I++     +       +  + +   G 
Sbjct: 249 ENVATFGMQMARAARLATDFAEVGEEERRRFKNIMLDEYQDTSHTQRLFLRALFS---GG 305

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V    D       W   T ++     ++   S                +  + K+L   
Sbjct: 306 CVTAVGDPMQAIYGWRGATAENLVQFVNDFPRSDG--------------QPAEKKQLTIS 351

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                    + +           R  + L+      +    +V L       EE   IA 
Sbjct: 352 WRNPQSVLQLANAVSDRAFAGQARTVEALDAGP---KAGQGEVQLAFTATGEEEVAYIAD 408

Query: 377 ALRMSLDENKK-----KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            +   L E +       +A++      +      L+  G+   I     L        +T
Sbjct: 409 CMEAQLRECEAAGNKLDAAILVRTNAESAVYLDALSERGVPAIIVGLAGLLHLPEVMDIT 468

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN-----------ALELVALRGNK 480
           S +  +   +       L+  P    G  +    R +            A ++  +    
Sbjct: 469 SAMKILVDPSSDQDALRLLLSPQFNLGAADVEALRTRVDQLAMAGKDELARKMGNVEETS 528

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE---------------------L 519
           +S  +  L       +   +  +        +++ D                        
Sbjct: 529 DSSPLSQLARQYDKLVEDAEAASSAVGLGHAIADPDIRFYDGTPLARGSVEKNGRLVCSE 588

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK-LTVTCLQNVCLDEHRKLPNLWFE 578
           ++   D  +  I  L            N  + +  + +       V     +        
Sbjct: 589 SLNYTDEAMVRIAQLGASLRKLRRFSLNKPLPELVEDIATEFGIRVEAAAGQYGSATAIT 648

Query: 579 EEGKTLSSLFSKIIETGSCIKAN----AIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                    F  I  T S   ++     + +++      DG    P     + + I+   
Sbjct: 649 RPTTAHLDRFVDIAATYSQNISDDVTGFLNYLEFAVEHDDGLERAPMNMPENCVQIMTMH 708

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
           +S+ L ++T+ + G+           + +L+  +Q      T    +  +A
Sbjct: 709 KSKGLEWETVAVPGIT-TSKFDKVDLSSWLTNSVQLPPGAITQVDPLTASA 758



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 73/247 (29%), Gaps = 25/247 (10%)

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
            L    + + T       R K        P + S SE + +I DP A  ARR  +      
Sbjct: 929  LSEVWETETTILVDEILRAKAAEIHLPMPTSMSTSEYQAMIADPVAF-ARRKARPVPFKP 987

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
             +       RGT FH  +          +  ++        D   +              
Sbjct: 988  NR----FARRGTAFHAWLENRFGAHSLLDDEDL------FGDQLDDFLGTEQVASERELE 1037

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                        E    +      V +P ++AI      + G  D +    +G   +TD+
Sbjct: 1038 KLK------ANFEASEWADRTPTHVEVPFEIAIGQR--RVVGRIDAVF-NDNGKWSVTDW 1088

Query: 919  KTGDNPKKETAQKLIDPQLSLEAAA----LKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
            KTG  P+ +  +     QL++   A    L+            A  FY+   +    D  
Sbjct: 1089 KTGQMPRGKEREVA-ALQLAIYRLAWSDRLREMGMETAPEEIEAGFFYVSAGRTLIPDEA 1147

Query: 975  TNDKKKY 981
                +  
Sbjct: 1148 LLPSRIE 1154


>gi|212640054|ref|YP_002316574.1| ATP-dependent exoDNAse (exonuclease V) subunit beta (contains
            helicase and exonuclease domains) [Anoxybacillus
            flavithermus WK1]
 gi|251764497|sp|B7GM51|ADDA_ANOFW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|212561534|gb|ACJ34589.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Anoxybacillus
            flavithermus WK1]
          Length = 1209

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/838 (9%), Positives = 200/838 (23%), Gaps = 156/838 (18%)

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA-NHPNGAIVLPGLDCHIPTAIWNTITE 276
            EA    +     +++     +      ++  V+ +      +    D       +     
Sbjct: 394  EAALYYRAQFAEVLVDEYQDTNMVQESILRLVSNDDEATGNMFMVGDVKQSIYGFRLAEP 453

Query: 277  KSTNITSSNTTYSTHPQYS------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                   +  T                   + LD      ++L         R    +  
Sbjct: 454  SLFLQKYNRFTKDGDGGLRIDLAKNFRSRKEILDGTNFIFRQL-MTETVGDMRYDDDAAL 512

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----- 385
                     +   +    I   ++   +    +    + EA  IA  ++  L E      
Sbjct: 513  RFGAQDYPDKQIPVECVWINEAKEESDEEEQEDVTAVQLEARWIAKKIKQLLAEPFFVYD 572

Query: 386  ----------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                       +   ++    + A  +  E  +  + +         +    SI+ SLL 
Sbjct: 573  RRLKGERRLMYRDIVILCRSMSSASAMLEEFRKQNVPVYAELSSGYFSATEVSIMLSLLK 632

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             I      + +A +++ P+                                 L    L R
Sbjct: 633  VIDNPYQDIPLAAVLRSPIV-------------------------------GLDEEALAR 661

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            I   K +           +E  +    L + + + +  L  ++T          ++D   
Sbjct: 662  IRLAKKDGAFYEALCAFVQEPHD--DELHEKMKRWLASLSEWRTAARQK----PLADLIW 715

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                                  +   + L     +  +T        + +I+ +    D 
Sbjct: 716  QLYRETNFYDYVG-GMPGGKQRQANLRALYDRAKQYEQTSFRGIFRFLRFIERLKEREDD 774

Query: 616  -ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                +   E+   + ++   +S+ L F  + L G  +    ++   +  L +     +  
Sbjct: 775  FGAARSLTEQEDVVRMMTIHKSKGLEFPVVFLAGAAKSFNMQDLRSDYVLDKDFGLGMRF 834

Query: 675  KTAEKYIGQ--------------------AAHDFEMANGTRH-LIYTRSLRENNIPTIAS 713
                                             +      +  L    + ++        
Sbjct: 835  VHPTWRASYPTVAQLAIKKKMKWQLLAEEMRILYVALTRAKEKLYIVCTAKDMEAKKKKW 894

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWT------------------------------- 742
            + +          +     K    ++ +                                
Sbjct: 895  QEVAYTSTWELPAYVIEKAKSYADWIGYALARHQQGICSSATVLHDPSLWDIHIVPAHEL 954

Query: 743  -----RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV------------ 785
                 +  ++       ++ +P           +        + P  V            
Sbjct: 955  EQEDAQANEHRDIVEAIQQLQPVAIKSEYEEEVNRRLFWTYTHAPATVLRAKQSVSELKR 1014

Query: 786  -----------YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
                         R+ L         K     +RGT+ H ++  +     +         
Sbjct: 1015 QRDIYGGHAEQPFRKELVERPRFLQAKMMTPAERGTMMHLVMQHV-----DVTKEVTVDA 1069

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAIE 892
            +++ I      E L      +       I   F     K      ++   +P      +E
Sbjct: 1070 VREQIARMVNGEWLTEEQATVI--DVESIVAFFNTPIGKRMQRATRLEREVPFYLAHEME 1127

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNP----KKETAQKLIDPQLSLEAAALKA 946
               + + G  D +   + G + + DYKT         K+  ++    QL+L   A++A
Sbjct: 1128 GETVVVQGVIDCVFEDEHG-LVLIDYKTDRVSWMNDPKQQLKRRYKGQLALYREAIEA 1184


>gi|328881293|emb|CCA54532.1| RecB family exonuclease [Streptomyces venezuelae ATCC 10712]
          Length = 315

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 75/250 (30%), Gaps = 24/250 (9%)

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
           +  P     P + S S     +  P     R I +L          +   RGTL H ++ 
Sbjct: 20  EQVPAEPRAPMSLSPSRASDFMQCPLLYRFRVIDRLPEK-----PSEAATRGTLVHAVLE 74

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSF 867
            L      + T      M         +          E+        W     ++   +
Sbjct: 75  RLFDDPAAERTAPRARAMVPGQWERLLETKPELGQLFAEDPEGQRLAGWLGEAERLVERW 134

Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
              E+  +  +E     +  +  ++S G+ L G  DRID+  SG V I DYKTG  P+  
Sbjct: 135 FSLEDPTR--LEPAERELFVETELDS-GLRLRGVIDRIDVAPSGDVRIVDYKTGKAPRP- 190

Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
             +     Q++  A  +       +       L  + L     +     +      +   
Sbjct: 191 EYRDGALFQMTFYALVVWR-----LRRVIPRRLQLVYLGSGEVLTYDPVEADLRRVERKL 245

Query: 988 EKSLKNLIEI 997
                 +   
Sbjct: 246 LALWDAIRTA 255


>gi|260771454|ref|ZP_05880379.1| exodeoxyribonuclease V gamma chain [Vibrio furnissii CIP 102972]
 gi|260613580|gb|EEX38774.1| exodeoxyribonuclease V gamma chain [Vibrio furnissii CIP 102972]
          Length = 1173

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 103/907 (11%), Positives = 225/907 (24%), Gaps = 126/907 (13%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+    +  G  + +      L      +    +L +       +   
Sbjct: 34  QILVQSPGMSQWLKMALAQELGVAANLD---FPLPATFIWEMFTQVLPNVPKRSAFNKEA 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK-- 165
              +L  L+        D          L      +    LA+ +ADI D          
Sbjct: 91  MTWKLMELLPS----QLDQDVFAPLRRYLQDDTDQSKLYQLAEKIADIFDGYLVYRPDWI 146

Query: 166 --WEDLHALKNEKYGMWWLLAA-DFLKIA-----SKYWTERLVELNASSPVGYQIALMRA 217
             WE   ++        W       L          ++    +  +    + +       
Sbjct: 147 AHWEAGESVAEIDGEHPWQPVLWKALYDYTLAQGQSHYHRANLYQSFIDALAHIDLTHD- 205

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN----- 272
             E L       + I G +   P     +  +  H +  ++      H    I +     
Sbjct: 206 --EALRAALPKRLFIFGISSLPPRYMDALKALGEHIDVHLMFTNPCQHYWGDIRDRKYLA 263

Query: 273 TITEKSTNITSSNTTYSTH-------------------------PQYSLAKLLDFLDIKR 307
            +  +       +    TH                          Q     LL  +    
Sbjct: 264 RVESQRRKQLVLHPNAETHTFTVEGEVSPLKGELDDYAGDELHTAQAVGNSLLASMGKLG 323

Query: 308 EDVKRLGNVSNEMY-------GRSMVISKSFLPPDTSDMRNTDILENKI---PNIQKCFS 357
            D   L   S+           R  ++ +        +    D L +     P +     
Sbjct: 324 RDNLYLLAQSDNEEHELFIDVPRDSLLHQLQADILHLEEHQDDTLLDSSAHKPALPHGDR 383

Query: 358 DVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLEL-----TR 408
            + L    +   E   +   L        +   +   ++ AD N        +       
Sbjct: 384 SLTLHACHSPMREVEVLHDELLAMFDRDPELKPRDIIVMVADINAYSPYIQAVFGNAPGE 443

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSR 466
             I   IS       +   +    L+           +  L++ P  +A+F         
Sbjct: 444 RFIPYSISDRTADQESPILNAFMQLVALPQSRCLASELLELLETPAMMARFALDASEFDT 503

Query: 467 AKNALELVALRGNKNSYDIMDLK-----------SLVLDRIATQKNNTHVPHWQSRLSEE 515
           AK  +E   +R   N     + +            +    +     ++         +  
Sbjct: 504 AKRWVEESGIRWGLNDATAQEFELPQTHQNTWQFGIARMLLGYAMPSSVGLFEAGGHAMA 563

Query: 516 DKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                  +   +   +     T    +        I  W +L  + L +    +      
Sbjct: 564 PYNEVQGMSAELAGKLAHFIDTISDYRQRLAQTQPIEAWRELLSSLLDDCFSVDLDGEMA 623

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           L  +    TL++L  ++ + G     +       +   + G  V  +      +     +
Sbjct: 624 L--KSIRDTLAALKEQLADAGYADAISPAIMGQYLHDKLSGTRVSQRFLAG-QVNFCTLM 680

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
             R + F+ + L G+N+GV+P++     F     ++    ++             M +  
Sbjct: 681 PMRSIPFNVVCLLGMNDGVYPRSMPPEGFDLMNGRTRPGDRSRRDDDRYL-FLEAMLSAQ 739

Query: 695 RHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGTDFFDNLKKRGQCYLDW---- 741
             L  +   R   +N   + S  +  LL        L G +   + +   +         
Sbjct: 740 HTLYISYVGRSIQDNTERVPSVLVTELLEYCQQNYCLAGDEALPSDESGARLIEQLQFTH 799

Query: 742 -------TRKLDYTTKQPHYKRPKPFPP----------------LEAQPRTYSFSEIKQL 778
                     L           P                         P      E+++ 
Sbjct: 800 AMVPFSPQAFLTDVGSYAKEWLPAALRQGTASGTFHRALDDYLLDAIYPLELDLVELQRF 859

Query: 779 INDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
              P   +  R LK+     +P  + D      G   + +   L+   +N  + +    +
Sbjct: 860 WRLPVQYFFNRRLKVVFEPPLPVMEDDEPFALGGLASYQLRDALLDGLLNAPSAQARDEV 919

Query: 836 KQIIDSH 842
               +  
Sbjct: 920 LAQFNKQ 926


>gi|326776760|ref|ZP_08236025.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
 gi|326657093|gb|EGE41939.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
          Length = 1199

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 87/832 (10%), Positives = 200/832 (24%), Gaps = 82/832 (9%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90
               +    V     T +A  EL     +         P +       G+        F 
Sbjct: 89  GTGQVAPEQVLGLTFTNKAAGELAERVRKALIAAGVTDPDVIDPDNPPGEPTISTYHAFA 148

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL  + L   +    RLL  A        K+       YP    S     ++ + L  
Sbjct: 149 GRLLTEHGLRIGLEPSTRLLADATRYQ-LAAKVLREAPGPYPALTRSFSTLVSDLLALDG 207

Query: 151 NLADIIDIIETEEK-KWEDLHALKNEKYG-------MWWLLAADFLKIASKYWTERLVEL 202
            L++ +    T E    E L  L   +              A   L   ++ +       
Sbjct: 208 ELSEHLVRPGTLETYDTELLRDLAAARLSNADLRKIPEAAEARRSLLGLTERYRAAKRSR 267

Query: 203 NASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV-------- 249
           +              AL R E   +++     +++     +  A   L+S +        
Sbjct: 268 DLLDFGDQIALSAELALTRPEVGRILREEFRVVLLDEYQDTSVAQRLLLSALFGAGTAPG 327

Query: 250 ------------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                          P G  V    D       W   +  + +    +  ++     +  
Sbjct: 328 EDGQAPSGHAPPGQAPTGHAVTAVGDPCQAIYGWRGASVANLDDFPEHFPHADGTPATRY 387

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
            L                 S        ++  +    +     +  +   +     +   
Sbjct: 388 SL-----------------SENRRSGGRLLQLANGLAEPLRAMHEGVEALRPAPGAERDG 430

Query: 358 DVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDI 415
            V         EE   +A +L   +       + A++         ++  L    I +++
Sbjct: 431 MVRCALVRTHTEEIAWLADSLAHLVRTGTPPGEIAVLCRTAGDFPEIQAALVARDIPVEV 490

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                L      + L ++   +       ++  L+  P  + G  +  L   +  L +  
Sbjct: 491 VGLAGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHR 550

Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                ++     L   V      +  +         +  +  +  +            L 
Sbjct: 551 AGHADDADADQRLADAVEGTDPAEVISLADALDTFLVVADAADDGLPFSAEARVRFARLA 610

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
               +   +  +  +    ++  T    V L    +       E       + ++     
Sbjct: 611 RELRDLRRSLADPLMDVLHRVLATTGLEVELSASPQALAARRRETLANFLDVAARFASLD 670

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                 A           +           +T+ +L   +S+ L +D +   GL  G +P
Sbjct: 671 GEASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAAPGLVTGQFP 730

Query: 656 KNTAKNPFLS-------RVMQSDLNLKTAEKYIGQAA------------HDFEMANGTRH 696
            +  +  +++        +      L   + + G  A            H         +
Sbjct: 731 SDRGREAWIAQPQVLPHALRGDAATLPALDPHDGLDAKAVKAFKAEMKEHQHTEELRLGY 790

Query: 697 LIYTRSLRENNIP---TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
           + +TR              S+   R         +++          W  +     + P 
Sbjct: 791 VTFTRPRSLLLGSGHWWGPSQKRTRGPSAFLEALYEHCAAGHGEIEAWADEPAEDEENPA 850

Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                            + +  +   +   A   R             D   
Sbjct: 851 LAERDADLAWPLPLDADALARRRAARDTVLAHLERLAAGEPSYGPAPADVPA 902



 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 92/823 (11%), Positives = 196/823 (23%), Gaps = 52/823 (6%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243
             A+ L+   +          A      + AL+R   E +         +  +       A
Sbjct: 406  LAEPLRAMHEGVEALRPAPGAERDGMVRCALVRTHTEEIAWLADSLAHLVRTGTPPGEIA 465

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             L  T  + P     L   D  +       +                    + A L+  L
Sbjct: 466  VLCRTAGDFPEIQAALVARDIPVEVVGLAGLLHLPEVADLVAVCEVLQDPGANASLVRLL 525

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
               R  +            R +V          +D R  D +E   P      +D     
Sbjct: 526  TGPRWRIGPRDLALLGRRARLLVHRAGHADDADADQRLADAVEGTDPAEVISLAD----A 581

Query: 364  ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
             D     A +    L  S +   + + L    R+L R +   L      +  + G+ +  
Sbjct: 582  LDTFLVVADAADDGLPFSAEARVRFARLARELRDLRRSLADPLMDVLHRVLATTGLEVEL 641

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
            +     L +           +A         A       +L  A    + +         
Sbjct: 642  SASPQALAARRRETLANFLDVAARFASLDGEASLLAFLGFLRTAAQYEKGLDNALPGGEN 701

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
             +  L +     +                S+  +E  +     +   +          + 
Sbjct: 702  TVKVLTAHKSKGLEWDVVAAPGLVTGQFPSDRGREAWIAQPQVLPHALRGDAATLPALDP 761

Query: 544  TCGNLS------------ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
              G  +                 +L +  +              W+    K      + +
Sbjct: 762  HDGLDAKAVKAFKAEMKEHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKRTRGPSAFL 821

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                    A   E         + E      E+ + L     L++  L         +  
Sbjct: 822  EALYEHCAAGHGEIEAWADEPAEDEENPALAERDADLAWPLPLDADALARRRAARDTVLA 881

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
             +      +  +         +    E+   +     E                   P  
Sbjct: 882  HLERLAAGEPSYGPAPADVPADGPLFEEEPFEEELFEEEPADEDWDWDALPTDRPPGPPE 941

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL-----DYTTKQPHYKRPKPFPPLEAQ 766
            A      +  +            G+   +  R L     D  +     +R +        
Sbjct: 942  AEPDTDPVPHIPAARHPREDPAAGRLTPEEARTLASWDRDLDSLAGELRRARASVREVLV 1001

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
            P   S +++ +L  DP A  AR + +    P          RGT FH  +    ++    
Sbjct: 1002 PAALSATQLLRLAEDPDAF-ARELARPMPRPPQ----PAARRGTRFHAWVESRYEELPLP 1056

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                               E      +         ++      E    +      V  P
Sbjct: 1057 MLG--------------PDELPGGDENDAEIADERDLAELKEAFERTPYARRTPYRVEAP 1102

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             ++ +      + G  D +        +I D+KT  +   +        QL++   A   
Sbjct: 1103 FQITLAGR--VIRGRIDAVYRTGD-RYEIVDWKTTRHRTADP------LQLAVYRLAWAE 1153

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
                 +   +V+   ++ ++    +       +      L ++
Sbjct: 1154 --LHGLPLDEVS-ATFLYVRSGETVRPRDLPGRAELERILLDE 1193


>gi|126734388|ref|ZP_01750135.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            CCS2]
 gi|126717254|gb|EBA14118.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            CCS2]
          Length = 1112

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 83/887 (9%), Positives = 205/887 (23%), Gaps = 128/887 (14%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
             LA L  ++                     + A    L  ++  ++  +E        L 
Sbjct: 266  VLAVLESVFLTGEGAKAPFTAKIGTFPTKATRAAHEDLMADIEPLMGRVEDMRPHRLGLL 325

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH--------L 222
            AL             DF  +    +  R + + A               +          
Sbjct: 326  ALDRTM------ALYDFANVFVPAYEARKLAMGALDFDDLIRKAKALLTDRDVAQWVLFR 379

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNT 273
            + G    I++  +  + P    ++  +         A       V    D       +  
Sbjct: 380  LDGGIDHILVDEAQDTSPTQWAVIEQLTQEFATGEGARMDRERTVFVVGDKKQSIYSFQG 439

Query: 274  ITEKSTNITSSNTTYSTHPQYSL---------AKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                + +   ++       Q                    I     +            S
Sbjct: 440  ADPAAFDQMKTHF--RDAHQAISKPFEVTSLDHSFRSSQAILSVVDQTFIEDRAAGMDDS 497

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE-AISIAIALRMSLD 383
            +                  I ++K+ + ++ F  V    A +     A  +A  +R  + 
Sbjct: 498  LTHIAFKENMPGRVDLWPVIEKSKVEDNREWFKPVDEPSATDHTVLMAQRVAEQIRYMIA 557

Query: 384  EN-------------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
                                      L+     L   +        + I  +  + +   
Sbjct: 558  HETIPEEVGNTGAYNRRSITEGDFLILVQRRSELFAEIIRACKAADLKIAGADRLRVGAE 617

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
            L    L ++L+ +    D +++A+ ++ PL  +   + +                +NS  
Sbjct: 618  LAVKDLAAVLSFLALPEDDLSLASALRSPLFGWSEQDLFTLAHHRPKNSFLWEALRNSDH 677

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
               L   +L+ +  + +         R+         LL     +    +    +   + 
Sbjct: 678  NETLA--ILNDLRGKSDFLRPYDLIERILTRHDGRRKLLARLGPEAEDGIDALLSQALAY 735

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                                           W E +   +        +    +  +  +
Sbjct: 736  E------------------STGVPSLTGFLTWMETDDLEVKRQMESQGDRIRVMTVHGAK 777

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
             ++    ++     +        L           +   +               ++  +
Sbjct: 778  GLEAPIVILPDTAKRDVKVNQELL---------PADDHVIWKTPAKSSAPSVIALRDKVI 828

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
            ++  +  + L             +         +   +  +      +   L    +   
Sbjct: 829  AKQARERMRLL------------YVAMTRAEKWLIAGAAGDIGEGDASWYNLVADGMDRR 876

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
              +   L   G   L    +LD+          KP   +                  P  
Sbjct: 877  GAYDAAL---GDMPLRRVSELDWDAPDLVTTDAKPDTIVAPPQFGALPIPKATKTIAPSE 933

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
            +   +I+K D         D   RGT  H ++  L                 ++     +
Sbjct: 934  LPGDKIMKGDP--AGDDIDDAKARGTQIHLLLEHL--------PMAAEEQRHELGLQLLQ 983

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK---IFVNIPAKMAIESIGIHLTGF 901
             ++               +    +   +K +            +     I  +G  + G 
Sbjct: 984  TDDP-------------ALVDDVIALIKKPELGWLWNANALTEVVITADIPQLG-RVHGA 1029

Query: 902  ADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
             DR+ +     +   DYK+        E     +  QL+    AL+ 
Sbjct: 1030 IDRLIIGPD-TITAIDYKSNRLVPSTPEDTPIGLQRQLAAYDYALRE 1075


>gi|308187974|ref|YP_003932105.1| Exonuclease V gamma subunit [Pantoea vagans C9-1]
 gi|308058484|gb|ADO10656.1| Exonuclease V gamma subunit [Pantoea vagans C9-1]
          Length = 1125

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 98/940 (10%), Positives = 222/940 (23%), Gaps = 93/940 (9%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              AS  + V +    Q L+ E  +  G  + I      L      +    +L    +  
Sbjct: 28  DPFASEMVLVQSPGMAQWLQMELAQTFGIAANIE---FPLPASFIWEMFVRVLPDIPVES 84

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             S      +L   + +   +     + +     L           L+  +AD+ D    
Sbjct: 85  AFSKASMGWKLMHRLPVMLEQE----EFISLRHYLHDDGDKRKLYQLSSRVADLFDQYLV 140

Query: 162 EEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
               W +                    L      +T+ L +             ++   +
Sbjct: 141 YRADWLNSWERGETIDGLGEAQRWQAALWRDLVSYTQALRQPEW-HRANLYSRFIQTLEQ 199

Query: 221 HLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                      + I G +   P   + +  +  H +  ++           I +      
Sbjct: 200 AKTTPENLPKRVFICGISALPPVYLQALQALGRHIDIHLLFTNPCRDYWGDIQDYAFLAK 259

Query: 279 TNITSSNTTYST-------------------HPQYSLAKLLDFLDIKREDVKRLG----- 314
                     +                      Q     LL        D   L      
Sbjct: 260 LQSRQRRRHGADESRGLFRDAEQAPALFNDAGEQQLTNPLLASWGKLGRDNLFLLSQMES 319

Query: 315 ----------NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                        N ++     +                   ++   +      +A+   
Sbjct: 320 NDDIDAFVDVEPDNLLHCMQHDLLNLQDNAVIGLNAAELAHSDQKRCLDPEDRSIAVQVC 379

Query: 365 DNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFGINIDI 415
            + + E   +   L   ++ +     +   ++ AD +        +         +   I
Sbjct: 380 HSAQREVEVLQDHLLAMMEADPTLKARDIIVMVADIDAYAPFIQAVFANAPADRYLPFAI 439

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALEL 473
           S               +LL           +  L+  P     F   E  L   +  +  
Sbjct: 440 SDRRASQAHPAIVAFLNLLALPDSRFVSEDVLALLDVPALAAHFSIDESGLRLLRRWVSE 499

Query: 474 VALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV-D 525
             +R   +   +  L        +                H          + +  LV +
Sbjct: 500 SGVRWGLDDASVEALSLPITGQHTWRFGLQRMLLGYAMESHNGDWEGILPYDESSGLVGE 559

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
                   L      +        +  W  L    L      +      L   E  +   
Sbjct: 560 LAGHLAELLSRLNHWRQLLAEPRPLVAWLPLCRELLNAFFSPDAETEAALLLVE--EQWQ 617

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
            L    ++             D +   +D + +  +      +     +  R + F  + 
Sbjct: 618 QLIEYGMDARFEEAIPVALLRDDLRSRLDQQRISQRFLAG-QINFCTLMPMRSIPFQLVC 676

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR- 704
           L G+N+GV+P+  A   F     QS    ++             M +  + L  +   R 
Sbjct: 677 LLGMNDGVYPRTLAPLGFDLMQQQSRKGDRSRRDDDRYL-FLEAMISAQQQLYISYIGRA 735

Query: 705 -ENNIPTIASRWLQRL-------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
            ++N     S  +  L         L G    +  +   +  +                +
Sbjct: 736 IQDNTERYPSVLVTELLDYIGQSFYLEGDGHLELDESAERVRMHLQHLHSRMPFAAENFQ 795

Query: 757 PKPFPPLEAQPRTYSFSEIKQLIND---PYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
           P       A+    +     Q   D   P        L L+    F + P R        
Sbjct: 796 PAARLQSFAREWLPAAQGAGQPQPDFVQPLEAPLIDALTLEAFLRFWRHPVRAWFHQRLG 855

Query: 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFHKISH--SFLE 869
                   +  +     +++L +  I++      +       +   H         +F E
Sbjct: 856 VSFWLEENELPDSEPFALDNLERYQINAQLLNALVEGEDTQRLYAHHRAAGNLPYGAFGE 915

Query: 870 HEE-KIQSSIEKIFVNI--------PAKMAIESIGIHLTG 900
                 +  ++++   +          ++ ++   + LTG
Sbjct: 916 LFWQAQRDEMQEVAAEVVTQRSDGESWEVNLQLEQVSLTG 955



 Score = 44.1 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 70/731 (9%), Positives = 163/731 (22%), Gaps = 60/731 (8%)

Query: 50   YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV----VEEKFTADLLLSYNLNPPVSN 105
                  A + L     +    ++   P I +  ++         + D+L   ++    ++
Sbjct: 425  VFANAPADRYLPFAISDRRASQA--HPAIVAFLNLLALPDSRFVSEDVLALLDVPALAAH 482

Query: 106  IQRLLELARLILIWRNKLP-DIIKDLYPESPLSLPISPANAIWLAKN--LADIIDIIET- 161
                    RL+  W ++       D      LSLPI+  +         L          
Sbjct: 483  FSIDESGLRLLRRWVSESGVRWGLDDASVEALSLPITGQHTWRFGLQRMLLGYAMESHNG 542

Query: 162  --EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
              E     D  +    +           L     +W + L E             +    
Sbjct: 543  DWEGILPYDESSGLVGELAGHLAELLSRLN----HWRQLLAEPRPLVAWLPLCRELLNAF 598

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                  T+  +++            + +        A++   L   +     +       
Sbjct: 599  FSPDAETEAALLLVEEQWQQLIEYGMDARFEEAIPVALLRDDLRSRLDQQRISQRFLAGQ 658

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD---- 335
                +     + P   +  L     +    +  LG    +   R    S+          
Sbjct: 659  INFCTLMPMRSIPFQLVCLLGMNDGVYPRTLAPLGFDLMQQQSRKGDRSRRDDDRYLFLE 718

Query: 336  ----TSDMRNTDILENKIPNIQKCFSDVALIEA-----------DNEREEAISIAIALRM 380
                         +   I +  + +  V + E             +   E    A  +RM
Sbjct: 719  AMISAQQQLYISYIGRAIQDNTERYPSVLVTELLDYIGQSFYLEGDGHLELDESAERVRM 778

Query: 381  SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
             L     +      +   A R      R  +     AG P         +  L   +   
Sbjct: 779  HLQHLHSRMPFAAENFQPAAR-LQSFAREWLPAAQGAGQPQPD-----FVQPLEAPLIDA 832

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
                A     +HP+  +      +S      E         + D ++   +    +    
Sbjct: 833  LTLEAFLRFWRHPVRAWFHQRLGVSFWLEENE--LPDSEPFALDNLERYQINAQLLNALV 890

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                     +              +   Q     +     +  T  +   S    L +  
Sbjct: 891  EGEDTQRLYAHHRAAGNLPYGAFGELFWQAQRDEMQEVAAEVVTQRSDGESWEVNLQLEQ 950

Query: 561  LQNVCL-DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
            +       + +    L +      ++      +E              +  R        
Sbjct: 951  VSLTGWLTQVQSDGLLRWRPGVLNMNDGLLLWLEHLVYCALGGTGSSRMFGRQQSRWCFL 1010

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
               +  +           L  +    L G+ + +   N +   +L+            ++
Sbjct: 1011 AVPQAEAIAA--------LNEYVAGYLAGMRQPLMLLNKSGGAWLTASYDKKSQQLLTDE 1062

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                             L+                +LQRL  +        + +  Q + 
Sbjct: 1063 A--------TQLKARNRLLTAWQGNYQVEGEGGDPYLQRLCRVLDEPQLQQITEAAQRWY 1114

Query: 740  DWTRKLDYTTK 750
                      +
Sbjct: 1115 LPVLAAHQDDE 1125


>gi|259418122|ref|ZP_05742041.1| double-strand break repair helicase AddA [Silicibacter sp. TrichCH4B]
 gi|259347028|gb|EEW58842.1| double-strand break repair helicase AddA [Silicibacter sp. TrichCH4B]
          Length = 1121

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 77/845 (9%), Positives = 188/845 (22%), Gaps = 113/845 (13%)

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY--WTERLVELNAS 205
            L   L   +  +ET   +   L A+        +     FL    +       L   +  
Sbjct: 303  LMDQLEPFMARVETARPRRLALDAMDKSLVLHDFARV--FLPEYERRKQLRGWLDFDDLI 360

Query: 206  SPVG--YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA---------NHPN 254
                       + A   + + G    I++  +  + P    ++  +A             
Sbjct: 361  VKARNLLNDPAVAAWVLYRLDGGIDHILVDEAQDTSPVQWDVVEKLAQEFTAGEGARADV 420

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS----------THPQYSLAKLLDFLD 304
               +    D       +      + +   +                   +S       L 
Sbjct: 421  ERTIFVVGDKKQSIYSFQGADPDAFDRMQAEFGRRLEETGEGLQNASLAFSFRSSAAILG 480

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
            +               + R                    + + +    +     V     
Sbjct: 481  LVDVVF---DGQDRAGFARDAKHQAFKSDLPGRVDLWPLVEKTEDEEDRDWTDPVDRPSP 537

Query: 365  -DNEREEAISIAIALRMSLD--------------------ENKKKSALITADRNLARRVK 403
              +    A  IA  ++  +D                           L+    +L   + 
Sbjct: 538  RHHSVILAERIAGQIKEMIDSGVTIPEDGPERGTFQRRPVHAGDFLILVQRRSDLFSEII 597

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
                  G+ I  +  + +   L    + +LL  +    D +++A  +K P+  +   + +
Sbjct: 598  RACKATGLPIAGADRLKVGAELAVKDIAALLRFLALPEDSLSLAEALKSPIFGWSEQQLF 657

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                    E+      +   +       +LD +  Q +         R+       A LL
Sbjct: 658  DLAH-RRTEMHLWPALRARSEAFPETMAILDDLRGQADFLRPYDLIERILTRHLGRAKLL 716

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                 +    +    +   +                               +W + +   
Sbjct: 717  GRLGTEAEDGINALLSQALAYERT------------------EVPSLTGFLVWMQTDDLE 758

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            +             +  +  + ++    ++   T +        + + GT   R+     
Sbjct: 759  IKRQMGAASSMIRVMSVHGSKGLEAPIVILPDTTKRRPSPAPEVMEVEGTPLWRM----- 813

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
                             +  +   M +       ++   +    +         +     
Sbjct: 814  ----------------SSDQMPPAMDAARAFAQEKQANERLRLLYVALTRAEKWLIVAGA 857

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
             + +       W QR+     T         G   L W                +     
Sbjct: 858  GDLDKGG--DSWYQRVEAALKTMDALPFDAPGGDGLRWAHGDWNAPPFVPSDLTEEEEIT 915

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                  ++                   +K         + +   RGT  H ++  L    
Sbjct: 916  LPDVFRHAAPAYVAPTATLRPSEDLGGVKALPGDSGLSEEEAKARGTALHLLLEHLPNVP 975

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
                     H+                        +    +   L   E  +        
Sbjct: 976  QADWDSRAEHI-----------------AQHDDWQVLLIEARQVLSSPECKEIFAPNTLA 1018

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEA 941
             +P    +      + G  DR+ +     V   D+K+        ET  + +  Q+    
Sbjct: 1019 EVPITADLGDT--RMHGIIDRLVVTPD-RVLAVDFKSNAVVPQSPETCPEGLLRQMGAYD 1075

Query: 942  AALKA 946
            AAL+ 
Sbjct: 1076 AALRQ 1080


>gi|251780603|ref|ZP_04823523.1| ATP-dependent nuclease subunit B [Clostridium botulinum E1 str. 'BoNT
            E Beluga']
 gi|243084918|gb|EES50808.1| ATP-dependent nuclease subunit B [Clostridium botulinum E1 str. 'BoNT
            E Beluga']
          Length = 1152

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 90/255 (35%), Gaps = 35/255 (13%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
            ++S S +++    P++ + +  LK         +    D G+  H+I+     K   +  
Sbjct: 773  SFSVSRLEKYAECPFSYFIQYGLKAKNRK--VYEFTPPDLGSFVHDILDSFTNKVKKEKI 830

Query: 829  PEINHLMK-------QIIDSHFEKENLP----PHIDIIWRHLFHKISHSFLE--HEEKIQ 875
               +  M        ++ID+  ++++       +    +   F ++    +    E+  +
Sbjct: 831  AWSDLDMIKCKNIVSELIDTKLKEDSGSILNSTNKYKYFSKRFKRVISKSVSVISEQMRR 890

Query: 876  SSIEKIFVNIPAK---------MAIESIG-IHLTGFADRIDLLK-SGF--VDITDYKTGD 922
               E                  + + S   ++L G  DRID L   G   + I DYKTG+
Sbjct: 891  GEFEVFNNEFSFGSYNDGEAIVLELPSNEKVYLNGRIDRIDTLDLEGSTYLRIVDYKTGN 950

Query: 923  NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
                       +  QL +   A +K   +          + Y ++      D I   K  
Sbjct: 951  KHFDLNQFYYGLQMQLLVYLDALIKNSEYILKKQALPGAVLYFKVD-----DPIIKTKGD 1005

Query: 981  YSADELSEKSLKNLI 995
             + +EL ++ L NL 
Sbjct: 1006 ITTEELEKEVLSNLK 1020


>gi|188588814|ref|YP_001919479.1| ATP-dependent nuclease subunit B [Clostridium botulinum E3 str.
            Alaska E43]
 gi|251764546|sp|B2UX56|ADDB_CLOBA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|188499095|gb|ACD52231.1| ATP-dependent nuclease subunit B [Clostridium botulinum E3 str.
            Alaska E43]
          Length = 1152

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 90/255 (35%), Gaps = 35/255 (13%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
            ++S S +++    P++ + +  LK         +    D G+  H+I+     K   +  
Sbjct: 773  SFSVSRLEKYAECPFSYFIQYGLKAKNRK--VYEFTPPDLGSFVHDILDSFTNKVKKEKI 830

Query: 829  PEINHLMK-------QIIDSHFEKENLP----PHIDIIWRHLFHKISHSFLE--HEEKIQ 875
               +  M        ++ID+  ++++       +    +   F ++    +    E+  +
Sbjct: 831  AWSDLDMIKCKNIVSELIDTKLKEDSGSILNSTNKYKYFSKRFKRVISKSVSVISEQMRR 890

Query: 876  SSIEKIFVNIPAK---------MAIESIG-IHLTGFADRIDLLK-SGF--VDITDYKTGD 922
               E                  + + S   ++L G  DRID L   G   + I DYKTG+
Sbjct: 891  GEFEVFNNEFSFGSYNDGEAIVLELPSNEKVYLNGRIDRIDTLDLEGSTYLRIVDYKTGN 950

Query: 923  NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
                       +  QL +   A +K   +          + Y ++      D I   K  
Sbjct: 951  KHFDLNQFYYGLQMQLLVYLDALIKNSEYILKKQALPGAVLYFKVD-----DPIIKTKGD 1005

Query: 981  YSADELSEKSLKNLI 995
             + +EL ++ L NL 
Sbjct: 1006 ITTEELEKEVLSNLK 1020


>gi|160945249|ref|ZP_02092475.1| hypothetical protein FAEPRAM212_02768 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442980|gb|EDP19985.1| hypothetical protein FAEPRAM212_02768 [Faecalibacterium prausnitzii
           M21/2]
          Length = 892

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 81/717 (11%), Positives = 184/717 (25%), Gaps = 114/717 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           +V     T +A  EL+     + G +          GD V         +          
Sbjct: 111 NVMAITFTNKAAGELKERLRRMLGGEE---------GDEVFASTFHSACVRI-------- 153

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  E       +     D  + +     +   +S  +     K   + +   + +   
Sbjct: 154 LRRWAEEIGYPRSFTIYDTDDAQRVMKT--VYKELSIDDKFLPIKAAINQMSRWKDQLVS 211

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E         +                 + ++L E  A          ++  AEH    
Sbjct: 212 PEQ----ALADHARDVKSTQT--ARIYAAYEKKLKEAGAFDFDDLIYQTVQLLAEHPDVR 265

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     +  A  RL+S +        V+   D       +   T ++  
Sbjct: 266 EFYQNKYRYLLVDEYQDTSVAQFRLVSLLTGPERNICVV--GDDDQSIYRFRGATIENIL 323

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                                            G  +  +       S      +     
Sbjct: 324 NFEKLYP--------------------------GTKTIRLEQNYRSTSNILNAANCVIQH 357

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS--ALITADRNL 398
           NT+     +         V +  A+NE++EA  IA  +   L E    +  A++      
Sbjct: 358 NTERKGKTLWTDNGEGDKVQVYTAENEQDEASHIADIIGQHLKEGGHLADHAILYRMNAQ 417

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +  ++   TR GI   I  G   +       + S ++ +    D + +  ++  P     
Sbjct: 418 SAPIESYFTRAGIPHKIVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEP----- 472

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                K     +D+ + +  +      +      Q         
Sbjct: 473 -------------------ARKIGATTVDVIADLAGQQGVSMLDIISHADQYAKLSRAVM 513

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
             +       +    L T   ++ +       SD  +LT                     
Sbjct: 514 PLLKFWQIYQRLQDSLATRTLDEFA-------SDVIELTGYKAMLEADAAKGHEDAADRL 566

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           +    L +      +     +A    +   +  +     +    E S  + ++    ++ 
Sbjct: 567 QNLGQLVNNVKNYCDQ-HGEEATLEGY---LEDIALISDIDSYNESSDQVVLMTIHSAKG 622

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHL 697
           L F  + L G+ EGV+P   +K               +      +    +       + L
Sbjct: 623 LEFPYVFLIGMEEGVFPSEMSKY--------------SEADLEEERRLAYVGITRAKKEL 668

Query: 698 IYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
             + S+             SR+L+ +      +    + ++      W  +   T  
Sbjct: 669 YISNSVTRMLYGRTQRNEPSRFLREIEPEYIEETRSPVLEQRSHMGGWGSEYSDTVP 725


>gi|291618662|ref|YP_003521404.1| RecC [Pantoea ananatis LMG 20103]
 gi|291153692|gb|ADD78276.1| RecC [Pantoea ananatis LMG 20103]
          Length = 1125

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 117/974 (12%), Positives = 242/974 (24%), Gaps = 126/974 (12%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            LL        + DPL+    AS  + V +    Q L+ E     G  + I      L  
Sbjct: 11  DLLKSLAARVIKLDPLD-DPFASEMVLVQSPGMAQWLQMELAHTFGIAANIE---FPLPA 66

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
               +    +L    +    S      +L   +      L    +       LS      
Sbjct: 67  SFIWEMFVRVLPDIPVESAFSKASMSWKLMHRLPS----LLLQDEFASLRHYLSDDGDKR 122

Query: 144 NAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
               L+  +AD+ D        W    E    +        W  A          +TE L
Sbjct: 123 KLFQLSARVADLFDQYLVYRADWLNSWERGQHIDGLGDAQIWQAALW---RDLVNYTEEL 179

Query: 200 VELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
            +             +    +           + I G +   P   + +  +  H +  +
Sbjct: 180 GQPKW-HRANLYARFIHTLEQTQTPPANLPERVFICGISALPPVYLQALQALGRHIDIYL 238

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------------------HPQYSLAK 298
           +           I +                                       Q     
Sbjct: 239 LFTNPCRDYWGDIQDYAFLAKLQSRQRRRHDREEYRGLFSDVARAPALFSDEGEQQLTNP 298

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI--------- 349
           LL        D   L +  +        +         S   +   L++K          
Sbjct: 299 LLASWGKLGRDNLYLLSQMDLNSEIDAFVDVEEDNLLHSMQHDLLNLQDKAVIGLTADEL 358

Query: 350 ------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLA 399
                   +      +A+    + + E   +   L   ++ +     +   ++ AD +  
Sbjct: 359 AYSGQKRCLDPADRSIAIQVCHSAQREVEVLQDHLLARMEADPGLKARDIIVMVADIDAY 418

Query: 400 RRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                 +         +   IS                LL           +  L+  P 
Sbjct: 419 APFIQAVFANAPAERYLPFAISDRRASQAHPAIVAFLHLLALPDSRFVSEDVLALLDVPA 478

Query: 455 AKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-----------SLVLDRIATQKN 501
               F   E  L   +  +    +R   +   +  L             L    +     
Sbjct: 479 LANHFSIDESGLRLLRRWVSESGVRWGLDDASVEALALPVTGQHTWRFGLQRMLLGYAME 538

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
           + H         +E   L   L  H+ + ++ L  ++           +  W  L    L
Sbjct: 539 SQHGDWQGILPYDESSGLVAELAGHLAELLSRLNHWR---QVLSEPRPLEAWLPLCRELL 595

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                 +      L   E  +   +L    ++         +   D +   +D + +  +
Sbjct: 596 NAFFTADPETEAALLLVE--EQWKALIEYGMDARFDEPIPVVLLRDDLRGRLDQQRISQR 653

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 +     +  R + F  + L G+N+GV+P+  A   F     QS    ++     
Sbjct: 654 FLAG-QINFCTLMPMRSIPFSVVCLLGMNDGVYPRTLAPLGFDLMQQQSRKGDRSRRDDD 712

Query: 682 GQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGG------TDFFDNLKK 733
                   + +  + L  +   R  ++N     S  +  LL   G       D   +L +
Sbjct: 713 RYL-FLEALISAQQQLYISYIGRAIQDNTERYPSVLVTELLEYIGQSFYLPGDEDQDLDE 771

Query: 734 RGQCYLDWTRKLDY------------------TTKQPHYKR----PKPF---PPLEAQPR 768
             +        L                      +     R    P+P    P L     
Sbjct: 772 SARRVRSHLEHLHSRMPFAPENFQPASAAHSFAREWLPAARGTGQPQPDFVQPLLTLPVE 831

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
           T +  +  +    P   + ++ L + F     + PD         + +          N 
Sbjct: 832 TLALEQFLRFWRHPVRAWFQQRLGVSFWLEENELPDSEPFAL---DSLERYQINAQLLNA 888

Query: 829 PEINHLMKQIIDSHFEKENLPPHI--DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                   ++   H    NLP     ++ W+    ++     +   +             
Sbjct: 889 LVTGEDTDRLYAHHRAAGNLPYGAFGELFWQAQREEMQEVAADVTSQRSEG-------ES 941

Query: 887 AKMAIESIGIHLTG 900
            ++ ++  G+ L+G
Sbjct: 942 WEINLDLDGVSLSG 955


>gi|300724826|ref|YP_003714151.1| exonuclease V subunit gamma [Xenorhabdus nematophila ATCC 19061]
 gi|297631368|emb|CBJ92063.1| exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease,
           ATPase, recombinase, helicase [Xenorhabdus nematophila
           ATCC 19061]
          Length = 1135

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 91/745 (12%), Positives = 187/745 (25%), Gaps = 100/745 (13%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+ +  E  G  + I      L      +    +LL    +   S   
Sbjct: 34  VILVQSPGMSQWLQIQLAEKLGIAANIE---FPLPATFIWQMFTQVLLDVPKDGAFSKDA 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
              +L  L+     +     + L     L   I       LA  +AD+ D       KW 
Sbjct: 91  MKWKLMTLLPDLLAE----PEFLALSHYLDQDIDKRKIHQLAGRIADLFDQYLVYRPKWL 146

Query: 168 DLHA---LKNEKYG-MWWL-LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
           +      L +       W       L   ++   +         P+ ++  L +     L
Sbjct: 147 EKWENNQLVDGLSSNQLWQKRLWSELVEYTRQLQQ---------PLWHRANLYQRFISAL 197

Query: 223 M------KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW----- 271
                  +     I I G +   PA  ++  T+  H +  ++      +    I      
Sbjct: 198 EEGNFPLENLPARIFICGISTLPPAYLQVFKTLGQHIDIHLMFTNPCQYYWGDIQSYSFL 257

Query: 272 --------------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
                           +        +S+       Q     LL        D   L +  
Sbjct: 258 TKLNSRKPKHYKNSQLLERFKDPENASSLFNEEGEQNLNNPLLASWGKLGRDNLYLLSQL 317

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIP---------------NIQKCFSDVALI 362
                    +            R+   LE+                   + +    +   
Sbjct: 318 EPDSDIHAFVELEPGCILHQIQRDILNLEDHAQIGSTENTFKNSLKKRAVDRSDRSLTFH 377

Query: 363 EADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINI 413
              + + E   +   L   LD++     +   ++ AD +        +         I  
Sbjct: 378 SCHSPQREIEVLQDQLLRLLDDDPSLTPRDIIVMMADIDNYAPYIQAVFGNAPEDRYIPF 437

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            IS               +LL+          +  L++ P     F           L  
Sbjct: 438 AISDRKARQAHPVLQAFITLLDLPQSRFTAEQVLALLEIPALAGKFA--IHEEGLRLLRR 495

Query: 474 VALRGNKNSYDIMDLKSLV---------------LDRIATQKNNTHVPHWQSRLSEEDKE 518
                        D    +                  +    ++   P       +E   
Sbjct: 496 WVKESGICWGLDDDNIEALSLPVTGQNTWHFGLTRMLLGYAMDSNAGPWNDVLPYDESSG 555

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           LA  L   +      L+     +       +++DW  +    L+     +      L   
Sbjct: 556 LAAELAGQLA---EFLMELNRWRKILSEEQTLTDWLAVCPQLLETFFESDDETELVLAL- 611

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
              +    +    +      +   +   D +    D E +  +     +L     +  R 
Sbjct: 612 -ITQQWQKVIEHGLNAHYEGRVPLVLLRDELAFRFDDEKISQRFLAG-SLNFCTLMPMRS 669

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-- 696
           + F  + L G+N+GV+       P L   + ++   +   K      + F  A  +    
Sbjct: 670 IPFKVVCLLGMNDGVY---PRTIPLLGFDLMAEKTQRGDRKRRDDDRYLFLEALASAEQF 726

Query: 697 LIYTRSLRE--NNIPTIASRWLQRL 719
           L  +   +   ++     S  +  L
Sbjct: 727 LYISYIGKSIRDDTECNPSVLVNEL 751


>gi|262201311|ref|YP_003272519.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247]
 gi|262084658|gb|ACY20626.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247]
          Length = 828

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 89/750 (11%), Positives = 194/750 (25%), Gaps = 110/750 (14%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +        ++P     V     T +A  E+R   I++ G ++T +  + +  
Sbjct: 55  TAVLTRRIAYLLAARDVSP---GQVLAITFTNKAAAEMRERVIDLVGPRATYM-WVSTFH 110

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                   A   L   +N   S               +  L  II+DL  +     P   
Sbjct: 111 STCVRILRAQSGLLAGMNSNFSIYD--------ADDSKRLLGMIIRDLELDPKKFSPRGV 162

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
             AI             + E    E                AA  +      +  RL   
Sbjct: 163 GVAISN----------FKNELVGPEQAVEAAASD-----EPAAQQIARIYAEYQRRLRAA 207

Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA- 256
           NA          +     H       +     +++     +  A   L+  +      A 
Sbjct: 208 NAFDFDDLIGETVALLHAHPEVAEYYRRRFRHVLVDEYQDTNHAQYVLIRELVGEVPTAG 267

Query: 257 -----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                 +    D       +   T ++      +   +             L+      +
Sbjct: 268 GLEPSELCVVGDADQSIYAFRGATIRNIEEFERDFPNAETIL---------LEQNYRSTQ 318

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
            + + +N +  R+       L  D+ D                    +    AD++R+E+
Sbjct: 319 TILSAANAVIARNENRRDKRLWTDSGDGEL-----------------IVGYVADSDRDES 361

Query: 372 ISIAIALRMSLD--------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
             IA  +    D              A+       +R ++    R GI   +  G     
Sbjct: 362 TFIAKEIESLTDYSIGGSSSHKYSDIAVFYRTNTGSRALEEVFVRHGIPYKVVGGTKFYE 421

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-----------------R 466
                 + + L  +   +D +++  ++  P    G   +                     
Sbjct: 422 RKEVRDVVAYLRVVANPDDAVSLRRILNTPRRGIGDRAEACVAVHSENTGRSFYESLIDA 481

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVL--DRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
           A   + ++  R  K     +DL   +      A               + E+      LV
Sbjct: 482 AAGKVAMLNTRAIKQIGGFVDLIEGLRTDFLTAFGAAGESDEDVAFIDATEEGADIGELV 541

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
           D I++        + + +   G           +  L  +         +     E +  
Sbjct: 542 DAIVERTGYRGELEASNDPQDGAR---------LDNLNELISVAQEFSRDAAELAEDEAA 592

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRL-IDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                      +  + +       + R+ +  +  +   E    + ++    ++ L F  
Sbjct: 593 DDDDPLESGRDTEGEPDPGSLAAFLERVSLVADADQLPDEGEGVVTMMTLHTAKGLEFPV 652

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
           + + G  +G +P   A         +  L      +   +                TR+ 
Sbjct: 653 VFVTGWEDGHFPHMRAMGDPAELSEERRLAYVGITRAKERLYLT---------RSITRAS 703

Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
               +    SR+LQ +            ++
Sbjct: 704 WGQPVSNPESRFLQEIPQHLLDWRRTEPRR 733


>gi|116072445|ref|ZP_01469712.1| Exodeoxyribonuclease V, RecC subunit [Synechococcus sp. BL107]
 gi|116064967|gb|EAU70726.1| Exodeoxyribonuclease V, RecC subunit [Synechococcus sp. BL107]
          Length = 1077

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 90/850 (10%), Positives = 203/850 (23%), Gaps = 62/850 (7%)

Query: 19  REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78
            E +  LL   L++        P  L ++ + V T    + L  +     G  S +    
Sbjct: 10  AEFLAQLLAQQLID------QQPGPLETLEVMVNTWPTSRWLGEQLAVANGISSLV--RF 61

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSN---IQRLLELARLILIWRNKLPDIIKDLYPESP 135
              G    E     L L      P      +  +LE+   +L     LP        E  
Sbjct: 62  PFPGSRFRELVRQVLDLPPKEADPWRANQLVWPVLEILPELLEQPAALPLKRWLDGREGG 121

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
                   +   LA+ +AD  D             +         W             W
Sbjct: 122 RHPQALSRDRWQLARMIADAFDDYALYRADQLAQWSASPSSAETDWQPLL---------W 172

Query: 196 TERLVELNASSPVGYQIALMRAEAEHL--MKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
                +LN           +      +         + + G +   P    L+  ++   
Sbjct: 173 RRLADQLNRPPFGLQVRDAIDRLRRGVVSADSLPKRLRLFGISALAPVQVDLIQALSGVL 232

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
           +  + L      +     +                       L      +  + + +   
Sbjct: 233 DVEVYLLTPCPDLWQRCGSRRELLQEAWLEPPDGRWLEAAPRLEASFGRMGAEFQQLLEG 292

Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI----------- 362
                    R   +  S +        +  +LE     +        L            
Sbjct: 293 SGDVQLGERREGDLFASPVQMAALSPGSPSLLEQLQEQLVDPDQSGGLHRIAKDQSLLFQ 352

Query: 363 EADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
            A     E   +   +   L    D   +   ++T   +    +   +      I +   
Sbjct: 353 AAPGPWREVQLVRDRILQWLAADPDLAPRDVLVMTPQVDRYAPLLNSVFNDADAIGVDLP 412

Query: 419 IPLSTT------LHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLSRAKNA 470
             L+          S  + +LL           +   + +P  +   G   +  +     
Sbjct: 413 WRLTDRTQQSSPGLSMAMLNLLELAAGRLTATGLEQWLANPALQELQGLSSEDCTLMTRV 472

Query: 471 LELVALRGN-----KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
           L+    R       +   +   L+  +   +             +  +    EL     +
Sbjct: 473 LQHTGFRWGLDATERGGDETHGLRWCLDRWLLGLVLPVRDGLAPAGAAPFQWELDP---E 529

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
            +++  T L              + + W  L  + LQ +  D       L          
Sbjct: 530 RLVRWWTLLDRMARMLEQFRRPQTCAAWVALLQSVLQELFGDGRAWSGELQTWTAALEDW 589

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                +      ++ +    ++++   +  ++ +    ++ +L I      R +    ++
Sbjct: 590 R----LRAVDCALELDIAVVLEVLNEALSVDSGRFGH-RTGSLTISALEPMRAIPHKVIV 644

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
           L GL+  V+P+   +  F        L              +  M+     LI      E
Sbjct: 645 LMGLDGAVFPRPNQRPGFHLLEQHRRLGDPRGSDQDRYVLLEALMSARRHLLISWCGRNE 704

Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                          +        +    G         L  +  Q           LEA
Sbjct: 705 RTGEAQPPAAPVEQWLAQLQQELSSSSTDGLVLTPAANPLARSNFQIEAPLSCDRRQLEA 764

Query: 766 QPR--TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
           +           + L   P   +     ++      ++     +     H      ++ +
Sbjct: 765 RRWLDRSRPEPQQALAWPPAWTFPLADSRIS--SMPEEPLVFEELLRWMHQPQAAWLRSK 822

Query: 824 INKNTPEINH 833
             +    I+ 
Sbjct: 823 GLRPGEGIDA 832


>gi|21226292|ref|NP_632214.1| DNA helicase II [Methanosarcina mazei Go1]
 gi|20904537|gb|AAM29886.1| DNA helicase II [Methanosarcina mazei Go1]
          Length = 908

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 72/736 (9%), Positives = 175/736 (23%), Gaps = 114/736 (15%)

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATARLMSTVANHP 253
           + E L      +        +    E     +    +I+        A  +L+  +  + 
Sbjct: 187 YEEILDSHKRLTFNRMINLALTNLQEKQNVLSDVKYLIVDEYQDINRAQEKLIQLIGLNS 246

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
               +    D       W    EK     +                              
Sbjct: 247 E---IFIVGDPRQTIYQWRGSDEKCFEDFAVKHI-------------------------- 277

Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
            +        +    +  +          +   + +  ++K    V + +  +   EA  
Sbjct: 278 -DAETISINENRRSGRQIIEVSNQFSDYFEDEYDHLDPVRKEEGAVYIAKLSDNIHEAKW 336

Query: 374 IAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
           IA  +   +D           L+ +    A           I   +   + L        
Sbjct: 337 IADQIEKHVDAGKCSYGDIGILLRSVNTSAPPFIDIFRERNIPFIVGGKVGLFRRPEIQT 396

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           +  L   ++            +    +    E       +ALE               +K
Sbjct: 397 MGKLFAWLYDKG------FWYESQWDRENKEEGEEL-LYSALESWNDGVPSCKLHSEVIK 449

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC--ITPLVTYKTNKNSTCGN 547
            L   +  T  +                    L  +       +  L  + +        
Sbjct: 450 KLENWKKNTLDSKYESFTEVYHELLVLLNYLNLDSEDPNHAVIMANLGRFSSLLTDFESA 509

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             +    +     L+N+C   +      + E+ G  +                       
Sbjct: 510 NMLGGRQRNWERDLKNLCWYMNSYASGSYEEQPGDDIR---------------------- 547

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                               + ++   +++ L +  + +  +N   +P + A       +
Sbjct: 548 ----------------GVDAVQLMTVHQAKGLEWPLVFVPAMNARRFPSSMAGREQTWMI 591

Query: 668 MQSDLNLKTAE-KYIGQAAHDFEMANGTRHL-IYTRSLRENNIPTIASRWLQRLLVLGGT 725
            ++  + +  E     +    +      + + + +     N   +  S ++   L    T
Sbjct: 592 PRNMFDAEKYEGDIESEKKLFYVALTRAKDVLVVSHFGTLNGRNSGESTFISEGLRDSKT 651

Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                                   K            +  +  TY+ SEI      PY  
Sbjct: 652 TKLS-------------------AKDELPLHDLTSSKISDEILTYTPSEIILYRKCPYFY 692

Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
              +I   +     +        G   H  + +      N+        +   +D +F  
Sbjct: 693 RLNQIWGYEPGFKERIG-----YGNTLHFCLQQAADLIKNEGYS-PISAISTAVDENFYM 746

Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
             +        +    +   SF++  E    +I+     + A++        +TG  D I
Sbjct: 747 PFVNKIQGEKIKEAAKRKLISFVKKHETDMHNIQ----EVEARIEFPLQKATITGKIDVI 802

Query: 906 DLLKSGFVDITDYKTG 921
                  +++ DYKT 
Sbjct: 803 IHDGD-QLEVRDYKTS 817


>gi|284032499|ref|YP_003382430.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
 gi|283811792|gb|ADB33631.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
          Length = 1239

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 75/686 (10%), Positives = 164/686 (23%), Gaps = 66/686 (9%)

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                      +       ++    +  PP  S           +  +     +       
Sbjct: 552  APTGYTAPTVIPAWSPNDNIPAQTASTPPTASPDTQPPTGGPAVTILGADPHEDLPRAQA 611

Query: 366  N--EREEAISIAIALRMSLDENKK---------------KSALITADRNLARRVKLELTR 408
            +     EA  +A  +  +LDE                    A++   R     ++  L R
Sbjct: 612  SVLREREAADVATVISQALDEGWTVYDEKTSTWRPAGAGDIAILVPARTSLPFLEDALDR 671

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
              I     A   +  T     L +   A+   +D +A+ T ++ PL   G  +       
Sbjct: 672  ADIPYRAEASSLVYQTAEVRDLLACARALGDPSDQLALVTALRSPLFGCGDDD------- 724

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH-- 526
              L      G   +       SL+   +          ++ SR     + LA ++ D   
Sbjct: 725  --LFTWKRSGASFTLTAPVPDSLLAHPVGEAMEWLRRTYYASRWLSPSEVLAKIVADRRM 782

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTK-LTVTCLQNVCLDEHRKLPNLWFEEEG---K 582
            +    T        +           W++         +    H+        E      
Sbjct: 783  LEVAATGPRARDAWRRVRFVVDQARAWSEVEHGGLRSYLAWAAHQGEEASRVAEAVLPET 842

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
               ++    I     ++   +    +         V+          +      +  +FD
Sbjct: 843  DADAVRVMTIHAAKGLEFPIVILSGMTASPNRQRGVQVLWPPDGGYAVKLKASIQTEDFD 902

Query: 643  TLILGGLNEGVWP--------KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF-----E 689
             +         +            A++  +  + +S     ++   +  +A+        
Sbjct: 903  LVQPVDEQMDEYERRRLLYVAATRARDHLVVSLHRSGTRRHSSNAELLTSANALDVPHIH 962

Query: 690  MANGTRHLIYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                      T   +        +         V       DN           T +   
Sbjct: 963  RLATPSTSALTADPASASRPEAGVPGEHFSLAPVASAASPDDNNDSPSGQKQALTTRTRR 1022

Query: 748  TTKQPHY-------KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
              +            R +       +  ++S S ++    D     A             
Sbjct: 1023 ALEVAPPLNRAEWQTRIEQARASSRRKSSHSPSGLEGTGPDVALHEADPGTAKAARDIDL 1082

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
                +   GT     +  +++     +      L   +      +  +          + 
Sbjct: 1083 PPWSKGRYGTAIGRAVHGVLQVV---DLTTGAGLDAAVAAQCLAEGVVEYA------DVV 1133

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
              +  S L  E   +++    +      +      + L GF D +     G + I DYKT
Sbjct: 1134 RALVRSALSSEIVQRAATRDHWRESYVGIPQPDGTV-LEGFIDLLYREDDGTLMIVDYKT 1192

Query: 921  GDNPKKE--TAQKLIDPQLSLEAAAL 944
               P            PQL      L
Sbjct: 1193 DAIPAAALHARIAHYTPQLQAYTTML 1218


>gi|126664590|ref|ZP_01735574.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17]
 gi|126630916|gb|EBA01530.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17]
          Length = 721

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 78/703 (11%), Positives = 190/703 (27%), Gaps = 129/703 (18%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP--PVS 104
           +     T +A +E+R    E+    S  L  I +   +      A    + NL     V 
Sbjct: 57  LLAVTFTNKAAKEMRHRIEEMMNIPSRGL-WIGTFHGIAHRLLRAHWKDA-NLPENFQVL 114

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +    L + + ++               +  +S                        E  
Sbjct: 115 DSDDQLRMVKRVMREAQIDETQFPPKQAQWWISSQKD--------------------EGL 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
           + +++     + +    +          + + +   +            L+R+    L +
Sbjct: 155 RADNIQENPGDHFTSTMVR-------VYRQYEKLCQQSGLVDFGE---LLLRSHELWLHR 204

Query: 225 G--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                        I++     +       +  +A+  N   +    D       W     
Sbjct: 205 PELLAHYQQRFQHILVDEFQDTNAIQYAWLQVLAS--NRVPLTVVGDDDQSIYGWRGAKV 262

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +      P   L KL       +  +K   +V +   GR             
Sbjct: 263 ENIQQYQRDF-----PNARLVKLEQNYRSTKLILKAANSVIDNNQGR------------- 304

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS--ALITA 394
                   L  ++ +       V+L  A NE++EA  IA  +   + +   ++  A++  
Sbjct: 305 --------LGKELWSDGVDGEPVSLYAAFNEQDEANYIADTITSWVQDGNLRAECAILYR 356

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L R GI   +  G+            + L  +    D  A   +V  P 
Sbjct: 357 SNAQSRVLEESLMRQGIPYRVYGGLRFYDRQEIRNALAYLRLVHYRRDDAAFERVVNLP- 415

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                      +  + DL+     +                 S 
Sbjct: 416 ----------------------PRGIGAKSLADLRQYAGKQ-----------------SI 436

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
              E A  ++D            +   +      ++++   L     Q +     ++   
Sbjct: 437 SMWESAQRMLDAGQMKGRAKTGLQKFLSIIEELSALAEHGTLHGLMQQTIDDSGLKEYHA 496

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKAN--AIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
               E+G+       +++   +  +         + I +           +   ++ ++ 
Sbjct: 497 SEKGEKGQGRVENLEELVNALTTYEVEEGIDPLSEFIAQAALDAGEAQAEDHEDSVQLMT 556

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L F  + + G+ EG++P +              ++L+   +   +    +    
Sbjct: 557 LHSAKGLEFPLVFMAGVEEGLFPHS--------------MSLEEPGRMEEERRLAYVGIT 602

Query: 693 GT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
              + LI T +             L R +     D    ++ R
Sbjct: 603 RAMKKLIITYAESRRLYGQEKFNALSRFVREIPGDCIQEVRLR 645


>gi|294102626|ref|YP_003554484.1| Exodeoxyribonuclease V [Aminobacterium colombiense DSM 12261]
 gi|293617606|gb|ADE57760.1| Exodeoxyribonuclease V [Aminobacterium colombiense DSM 12261]
          Length = 1173

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 90/862 (10%), Positives = 212/862 (24%), Gaps = 94/862 (10%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPAT 242
               F  I  + W E     N  S        M A             I++     + P  
Sbjct: 352  LLGFSAILWQLWDEFRRRKNRLSFDDMIRYAMEALEHSPSYAERFKEILVDEFQDTNPLQ 411

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             RL+  V +H     ++   D       +                Y  H  Y L      
Sbjct: 412  DRLIQAVRSHSQRLFIV--GDLKQSIYRFRHADLSLFGSYIKKAKY-GHGDYILLDTSFR 468

Query: 303  ------LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
                   ++         +   +         +      T ++R    ++  +  ++   
Sbjct: 469  SKEILVHEVNDLFSSVWKDGLGQELPLPFESLEVPHYLSTHELRQQCTVDPFLTYLEGGK 528

Query: 357  SDVALIEADNER------------EEAISIAIALRMSLDE-NKKKSALITADRNLARRVK 403
                + EA   +            EE  ++    +  L     K  A++   R     + 
Sbjct: 529  EGEKIREARLRQIRRLALLFSQYYEEKRTVWDKQKECLRPVQWKDMAILVPSRTSWFPLL 588

Query: 404  L--ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                   F + I         +      L +LLN +      + + + +  PL+     E
Sbjct: 589  EKIFFEEFQLPIYFEGSTSYFSRSEIQDLIALLNFLDDPGKELYLMSFLSSPLSSLSLEE 648

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                              +    +    +  +D      +        +   E+      
Sbjct: 649  VRDLALDAPKGYRLQAFQEKWPHL----ARQIDDWRLMAHFLGPSAVLASFLEKSDSFLR 704

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                   + +   +    +                   C   +     R+      +   
Sbjct: 705  AFPAWKRRGVAANMRKAIDMAREFEE----AIGTSLPGCASYLREAMERQEKFAEPDVSN 760

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            +  + +    +     ++   +  + +      GE           +             
Sbjct: 761  EKENVIRVMTVHGSKGLEFPVLAVLGLERTSSAGEKGSLMPSPKMGV------------- 807

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
                L  +              LSR+ +     +            +      R  +   
Sbjct: 808  ---ALSRIPGERNSGQAPLAWSLSRLFEEQEEYEEW------QRLFYVACTRARDSLILC 858

Query: 702  ----SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
                  R+   P   S WL+ LL     +      +          + + + K      P
Sbjct: 859  GHLPWRRDGYSPGDRS-WLKMLLSW-NPELLPLTDEPAAKAGGPKEERERSHKYSSVPLP 916

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK---LDFIPHFKKDPDRTDRGTLFHN 814
                   A     S +        PYA   +       +   P         D G+L H 
Sbjct: 917  SSEHQYLA---RISATSFALFQYCPYAYRMKHRQGHELVWEQPGEYPSEGGADVGSLVHY 973

Query: 815  IITE--LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            ++++     K +    PE  +         F +        +  R       +S+L   +
Sbjct: 974  LLSQWDFASKPLESFFPEEEN------WDTFTETLPGKLRAVWKRPRVPSHIYSWLLTFQ 1027

Query: 873  KIQSSIEK------IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
            +             +   +P +  + +    + G  D +   ++  + I D+K       
Sbjct: 1028 QGAIVGRILKNNLTVKKEVPFRADLVNGP-TMVGAIDLL-WHENDMLFIRDFK---ITTI 1082

Query: 927  ETA-QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE 985
                + L   QL+  A A+      +       +L +  L++    + + +  ++   D+
Sbjct: 1083 SQVPENLYRDQLAFYALAM-----KKTLSVPRISLGFWHLREG--TEELLSSLEREDWDQ 1135

Query: 986  LSEKSLKNLIEIVTLLQNGEQP 1007
            +  +  K   + ++      + 
Sbjct: 1136 IEGEVRKMARQALSGPFKPVKG 1157


>gi|227114721|ref|ZP_03828377.1| DNA-dependent helicase II [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 720

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 78/689 (11%), Positives = 163/689 (23%), Gaps = 125/689 (18%)

Query: 50  YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP---VS 104
              T +A  E+R     + G          I +   +      A   +  NL      + 
Sbjct: 60  VTFTNKAAAEMRHRIDHLIGTSQGGMW---IGTFHGLAHRLLRAH-HMDANLPQDFQILD 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +  +L  L RLI                         P  A+W        I+  + E  
Sbjct: 116 SEDQLRLLKRLIRALNLDEKQ--------------WPPRQAMWF-------INGKKDEGL 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
           + + + +  N      W           + + E              +            
Sbjct: 155 RPQHIESYGNP-IEQTWQR-------VYQAYQEACDRAGLVDFAELLLRAHELWLNKPHV 206

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +       +  +A   + A V+   D       W     ++ 
Sbjct: 207 LNHYRERFTNILVDEFQDTNRIQYAWIRMLAG--DSAKVMIVGDDDQSIYGWRGAQVENI 264

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +   +                            G  +  +       S      +    
Sbjct: 265 QLFLKDFA--------------------------GAETIRLEQNYRSTSNILKAANALIA 298

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397
            N   L   +         ++L  A NE +EA  +   ++   +     K +A++     
Sbjct: 299 HNGGRLGKNLWTDGVEGEPISLYCAFNELDEARYVVNRIKTWHENGGALKDNAILYRSNA 358

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L +  +   I  G+            S L  I   ND  A   +V  P    
Sbjct: 359 QSRVLEEALLQQSMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGI 418

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G     + R          R          L            +          L+ E  
Sbjct: 419 GDRTLDVVRQTAR-----DRQLTLWQSTRALLQEKALAGRAAASLQRFIELIDALAYETS 473

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           EL + +        + L +    +    G   + +  +L     Q    +E +       
Sbjct: 474 ELPLHIQTDRAIKDSGLWSMYEQEKGEKGQARVENLEELVTATRQFSYQEEDQ------- 526

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                                  + +     ++                 + ++    ++
Sbjct: 527 -----------------------DLMPLQAFLSHAALEAGEGQADANQDAVQLMTLHSAK 563

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + + G+ E           F S++   +      E+ +        M      L
Sbjct: 564 GLEFPQVFIVGMEE---------GMFPSQMSLDEGGRLEEERRLAYVGVTRAM----EKL 610

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVL 722
             T +              SR++  L   
Sbjct: 611 TITYAESRRLYGKEAYHRPSRFVGELPEE 639


>gi|258542141|ref|YP_003187574.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256633219|dbj|BAH99194.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256636278|dbj|BAI02247.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03]
 gi|256639331|dbj|BAI05293.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07]
 gi|256642387|dbj|BAI08342.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22]
 gi|256645442|dbj|BAI11390.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26]
 gi|256648495|dbj|BAI14436.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32]
 gi|256651548|dbj|BAI17482.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654539|dbj|BAI20466.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12]
          Length = 743

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 82/689 (11%), Positives = 170/689 (24%), Gaps = 118/689 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R     + G  +  L  + +   +                     
Sbjct: 73  QILTVTFTNKAAREMRERIGLLLGSPAEGL-WLGTFHALCARM----------------- 114

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  E   L   +     D    L  +  +  P       W A  L  +I   +     
Sbjct: 115 LRRHAEYVGLTQSFTILDTDDQLRLLKQ--VMAPWQIDIKRWPAPGLLGVIQRWKDRGLT 172

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            E +   ++  +      A          +  RL +LNA       + +           
Sbjct: 173 PERITPTEDSDFANGHARA------IYTAYQVRLKQLNACDFGDLMLHVTEILRTRPDVL 226

Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNG-AIVLPGLDCHIPTAIWNTITEKST 279
            +       I++     +       +  +A H  G A +    D       W     ++ 
Sbjct: 227 AQYHRLFRYILVDEYQDTNTIQYLWLRLLAKHAEGPANICCVGDDDQSIYSWRGAEVENI 286

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      P   + +L       R  +     +      R                
Sbjct: 287 LRFEKDF-----PSAKVVRLERNYRSTRHILGAAAGLIAHNSER---------------- 325

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397
                   +          V+++   +   EA  +         +    K+ A++     
Sbjct: 326 ---LGKTLRPGREDAEGKKVSVLGVWDSDTEARMVCEQAEKLRAQGHALKEIAILVRAGF 382

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             R  +  L + G+   I  G+            + +  + +  D +A   ++  P    
Sbjct: 383 QTRAFEERLMQTGLPYRIVGGLRFYERAEIRDALAYMRVLSQPADDLAFERIINVPKRGV 442

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G        A                                          +    ED 
Sbjct: 443 GPAGLQKLHAAARANN------------------------------LPLTGGTEKLLEDN 472

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            L      H+ Q +    + +         +++    + +                 L  
Sbjct: 473 ALKGKSAAHLRQLMEAFASTRDILAREGHVVAVEHLLEESGYMDMWRQDRSPDAPGRLEN 532

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            +E     + F  + E                   +       +  +   L I+    ++
Sbjct: 533 LKELTRALADFGTLGE---------------FLEHVALVMDHDENGQDDYLSIMTLHGAK 577

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L FDT+ L G  EGV+P     +         +  LK  E+    A      A      
Sbjct: 578 GLEFDTVFLPGWEEGVFPSQRTLD---------EGGLKGLEEERRLAYVGITRARQ--EA 626

Query: 698 IYTRSLRENN----IPTIASRWLQRLLVL 722
           I   + R        P++ SR+L+ L   
Sbjct: 627 IIFHAGRRRIYANWQPSMPSRFLEELPDE 655


>gi|269302561|gb|ACZ32661.1| ATP-dependent DNA helicase pcrA [Chlamydophila pneumoniae LPCoLN]
          Length = 639

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 85/691 (12%), Positives = 172/691 (24%), Gaps = 127/691 (18%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTI-LPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            +     T +A +EL+   +      +   +P++ +   +                    
Sbjct: 52  EILAVTFTNKAARELKERIVNQCASTNEFDVPMVCTFHSLG------------------- 92

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETE 162
               +  L R I +   +    I D      L       + +   LA  +   I   +  
Sbjct: 93  ----VFILRRSINLLNRENNFTIYDQSDAEKLIKYALQQHNLKPNLASKIQAHISQAKNR 148

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               EDL       Y    +          + + ++L+E NA          +R   E  
Sbjct: 149 LLFPEDL---DPNDYIDPVVS-------IYQEYQKKLIEANALDFDDLLFLTVRLLRESP 198

Query: 223 MKGT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                       ++I     +  A   LM  ++       V    D       W      
Sbjct: 199 EAQELYNQLWKALLIDEYQDTNHAQYTLMQLLSKQHRN--VFAVGDPDQSIYSWRGANIH 256

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +     ++        Y  AK+L                   +              +  
Sbjct: 257 NILNFEND--------YPNAKVL------------------CLEENYRSYGNILNAANAL 290

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
              N   LE ++ +++     + L     +REEA  +A  +           +   +   
Sbjct: 291 IKNNASRLEKELRSVKGPGEKIRLFLGSTDREEADFVAAEILQLHRVGNIKLRDICIFYR 350

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
             + +R  +  L R  I  +I  G+          + + L      +D +A    V  P 
Sbjct: 351 TNSQSRTFEDALLRRRIPYEIIGGLSFYKRKEIQDILAFLRIFISKSDIVAFDRTVNLPK 410

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G    +                        +   +    A Q+         S+  +
Sbjct: 411 RGIGSTTIFAL------------------TQYAIAQGLPILKACQQALDTKDVKLSKKQQ 452

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           E  +  + L   I      L      ++       +    +   T        E      
Sbjct: 453 EGLQEYLALFPQIEHAYNTLSLRDFIESVVRITGYLEILKEDADTFKDRKSNLEELYHKA 512

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           L  E++                            +  L    +   +   +  + ++   
Sbjct: 513 LESEQQ-------------------NPKTHLELFLDDLALKGSDDDQNLTADRVNLMTLH 553

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
             + L F    L GL E + P   +                T E    +    +      
Sbjct: 554 NGKGLEFRVSFLVGLEEQLLPHANSLGG-------------TYENIEEERRLCYVGITRA 600

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLL 720
           + L+Y      RSL         SR+L+ + 
Sbjct: 601 QDLLYLTAAQVRSLWGTVRMMKPSRFLKEIP 631


>gi|320526747|ref|ZP_08027937.1| hypothetical protein HMPREF9430_00025 [Solobacterium moorei F0204]
 gi|320132715|gb|EFW25255.1| hypothetical protein HMPREF9430_00025 [Solobacterium moorei F0204]
          Length = 896

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 110/356 (30%), Gaps = 45/356 (12%)

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL-KTAEKYIGQAAHDFEMA-NGTRHLIY 699
           +   + G +   +P     N        + +    +  K  G   +      +    + Y
Sbjct: 419 EVTYVIGCSGKNYPGFPVHNGLFDEDYLAKIPAYPSMNKRYGYYMNALRWIDSSAEEIYY 478

Query: 700 TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
           + S  +             + +        ++K     +      +D   +  H   P+ 
Sbjct: 479 SYSTNDYQGK--------EMQLAYEVQSKVDMKTENIPWPIL--LVDSHMEVKHELTPET 528

Query: 760 FPPLEAQPRTY---SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
              L          S S ++    +PY  + ++ L +  +     + D    G + H+ +
Sbjct: 529 AQQLFLDETGLLNGSVSTVESYYRNPYGYFIQKGLGI--MDQEFSELDPITIGNIQHHFM 586

Query: 817 TELIKKRINKNTPE-----------------INHLMKQIIDSHFEKENL-PPHIDIIW-- 856
             L+    NK   E                  +  +K+++  +F+   L  P+   ++  
Sbjct: 587 YTLLSSYKNKYMHESVKRKQYALQEDGKNILTSTEIKELLRPYFDILKLTHPNEQYLYDI 646

Query: 857 -RHLFHKISHSFLE--HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913
                      F+   H+ +  SS    +        +    +++ G  DRIDL +   +
Sbjct: 647 SLERLADSLSKFMTFMHDLEKDSSFIPEYFEYRLPETV-IGNVNIHGIIDRIDLYQD-LI 704

Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
            I DYK+      +   ++ +  Q+      +      Q        + YI +K +
Sbjct: 705 RIIDYKSSVLSISEAEVKQGLRLQMLTYMMIVANNL--QGKKYNPTAVQYISMKDE 758


>gi|319957110|ref|YP_004168373.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511]
 gi|319419514|gb|ADV46624.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511]
          Length = 685

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 87/707 (12%), Positives = 200/707 (28%), Gaps = 133/707 (18%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L   L        ++P   A+      T +A  E+R   + + G K+   P++ +     
Sbjct: 34  LTTRLAYLLGEVGIDP---ANTLTLTFTNKAATEMRDRALRMIGDKAAYPPLLCTFHKFG 90

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                               I+RL    R ++I  +    +I+ L  +  + L +S    
Sbjct: 91  LIFLKFH-------------IERLGRDNRFVIIDSDDKKRLIRSLAKDQKIDLNLSF--- 134

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
                 LA  I   +      E++ A    +   +   A        + + E + E N  
Sbjct: 135 ------LASEISKYKNTLLTPEEVVA--KAELPDYKKAA-----RIYQLYQENIEENNLV 181

Query: 206 SPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                 +   R   E+             I++     +     +L+  + +  +   V+ 
Sbjct: 182 DFDDLLMLTYRILEENEDLRKETSQRYQYIMVDEYQDTNELQYKLLRQLCSEHDNLCVV- 240

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D       W     ++              Q+     +  L+      + +   +N +
Sbjct: 241 -GDDDQSIYGWRGANIRNILDF---------HQHFDNTKVVKLETNYRSTRPILEAANAL 290

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
              +                 +  L  K+ + +    +V L+ + +E  EA +IA  ++ 
Sbjct: 291 IEHN-----------------SKRLGKKLVSHRGDGPEVELLHSLDEAHEARNIAQKIKG 333

Query: 381 SLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
            L E  +  + A++     L+R ++   +R G+   +  G+          + S    + 
Sbjct: 334 LLAEGVDPDEIAVLYRINALSRSLEEGFSREGLPFKLIGGMRFYERAEIKDIISYFRVLS 393

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
             +D  +   ++  P                                  L    +D++  
Sbjct: 394 NPHDDFSFLRIINKP-------------------------------KRGLGKTSIDKLMR 422

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT--YKTNKNSTCGNLSISDWTKL 556
             +      +Q+  S  + ELA  +     + +  L    ++    +     +  D+ + 
Sbjct: 423 LAHERQQSLYQAIESSSEAELASAVSKKAAKTLKTLNETIHELQDEAEKSLYNFVDFFEE 482

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L  +E    L           S +K   +   + +  +    
Sbjct: 483 KIGLKDFYGSMVDGFERILNIDEFYGYLRD---------SVMKNPELTLDEFLNDI--SL 531

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
                  +   + I+    ++ L F+ L + G+ E  +P                  L  
Sbjct: 532 QSDQDEVEGDAITIMSIHAAKGLEFEHLYVIGMEEEFFPL-----------------LGD 574

Query: 677 AEKYIGQAAHDFEMANGTR-HLIYTRSLRE----NNIPTIASRWLQR 718
                 +    +      + HL    S              SR+L  
Sbjct: 575 GCNMEEERRLGYVAITRAKTHLTLCYSDSRFYKGRRKQLEKSRFLGE 621


>gi|182436134|ref|YP_001823853.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464650|dbj|BAG19170.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 1162

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 87/834 (10%), Positives = 201/834 (24%), Gaps = 82/834 (9%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90
               +    V     T +A  EL     +         P +       G+        F 
Sbjct: 57  GTGQVAPEQVLGLTFTNKAAGELAERVRKALIAAGVTDPDVIDPDNPPGEPTISTYHAFA 116

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL  + L   +    RLL  A        K+       YP    S     ++ + L  
Sbjct: 117 GRLLTEHGLRIGLEPSTRLLADATRYQ-LAAKVLREAPGPYPALTRSFSTLVSDLLALDG 175

Query: 151 NLADIIDIIETEEK-KWEDLHALKNEKYG-------MWWLLAADFLKIASKYWTERLVEL 202
            L++ +    T E    E L  L   +              A   L   ++ +       
Sbjct: 176 ELSEHLVRPGTLETYDTELLRDLATARLSNADLRKIPEAAEARRSLLGLTERYRAAKRSR 235

Query: 203 NASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV-------- 249
           +              AL R E   +++     +++     +  A   L+S +        
Sbjct: 236 DLLDFGDQIALSAELALTRPEVGRILREEFRVVLLDEYQDTSVAQRLLLSALFGAGTAPG 295

Query: 250 ------------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                          P G  V    D       W   +  + +    +  ++     +  
Sbjct: 296 EDGQAPTGHPPPGQAPTGHAVTAVGDPCQAIYGWRGASVANLDDFPEHFPHADGTPATRY 355

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
            L                 S        ++  +    +     +  +   +     +   
Sbjct: 356 SL-----------------SENRRSGGRLLQLANGLAEPLRAMHEGVEALRPAPGAERDG 398

Query: 358 DVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDI 415
            V         EE   +A +L   +       + A++         ++  L    I +++
Sbjct: 399 MVRCALLRTHTEEIAWLADSLAHLVRTGTPPGEIAVLCRTAGDFPEIQAALVARDIPVEV 458

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                L      + L ++   +       ++  L+  P  + G  +  L   +  L +  
Sbjct: 459 VGLAGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHR 518

Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                ++     L   V      +  +         +  +  +  +            L 
Sbjct: 519 AGHADDADADQRLADAVEGTDPAEVISLADALDTFLVVADAADDGLPFSAEARVRFARLA 578

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
               +   +  +  +    ++  T    V L    +       E       + ++     
Sbjct: 579 RELRDLRRSLADPLMDVLHRVLATTGLEVELSASPQALAARRRETLANFLDIAARFASLD 638

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                 A           +           +T+ +L   +S+ L +D +   GL  G +P
Sbjct: 639 GEASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAAPGLVTGQFP 698

Query: 656 KNTAKNPFLS-------RVMQSDLNLKTAEKYIGQAA------------HDFEMANGTRH 696
            +  +  +++        +      L   + + G  A            H         +
Sbjct: 699 SDRGREAWIAQPQVLPHALRGDAATLPALDPHDGLDAKAVKAFKAEMKEHQHTEELRLGY 758

Query: 697 LIYTRSLRENNIP---TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
           + +TR              S+   R         +++          W  +     + P 
Sbjct: 759 VTFTRPRSLLLGSGHWWGPSQKRTRGPSAFLEALYEHCAAGHGEIEAWVDEPAEDEENPA 818

Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                            + +  +   +   A   R             D    +
Sbjct: 819 LAERDADLAWPLPLDADALARRRAARDTVLAHLERMAAGEPSYGPAPADVPADE 872



 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 90/820 (10%), Positives = 188/820 (22%), Gaps = 51/820 (6%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243
             A+ L+   +          A      + AL+R   E +         +  +       A
Sbjct: 374  LAEPLRAMHEGVEALRPAPGAERDGMVRCALLRTHTEEIAWLADSLAHLVRTGTPPGEIA 433

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             L  T  + P     L   D  +       +                    + A L+  L
Sbjct: 434  VLCRTAGDFPEIQAALVARDIPVEVVGLAGLLHLPEVADLVAVCEVLQDPGANASLVRLL 493

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
               R  +            R +V          +D R  D +E   P      +D     
Sbjct: 494  TGPRWRIGPRDLALLGRRARLLVHRAGHADDADADQRLADAVEGTDPAEVISLAD----A 549

Query: 364  ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
             D     A +    L  S +   + + L    R+L R +   L      +  + G+ +  
Sbjct: 550  LDTFLVVADAADDGLPFSAEARVRFARLARELRDLRRSLADPLMDVLHRVLATTGLEVEL 609

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
            +     L +           +A         A       +L  A    + +         
Sbjct: 610  SASPQALAARRRETLANFLDIAARFASLDGEASLLAFLGFLRTAAQYEKGLDNALPGGEN 669

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
             +  L +     +                S+  +E  +     +   +          + 
Sbjct: 670  TVKVLTAHKSKGLEWDVVAAPGLVTGQFPSDRGREAWIAQPQVLPHALRGDAATLPALDP 729

Query: 544  TCGNLS-----ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
              G  +          K      +          P       G        +     + +
Sbjct: 730  HDGLDAKAVKAFKAEMKEHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKRTRGPSAFL 789

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
            +A           +        + E++  L       +  L  D   L            
Sbjct: 790  EALYEHCAAGHGEIEAWVDEPAEDEENPALAERDADLAWPLPLDADALARRRAARDTVLA 849

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
                  +                     +              +L  +  P         
Sbjct: 850  HLERMAAGEPSYGPAPADVPADEPLFEEEPFKEEPADEDWDWDALPTDRPPGPPEAEPDT 909

Query: 719  LLVLGGTDFFDN---------LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
              V                    +  +    W R LD    +   +R +        P  
Sbjct: 910  DPVPHIPAARHPREDPAAGRLTPEEARTLASWDRDLDSLAGE--LRRARASVREVLVPAA 967

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S +++ +L  DP A  AR + +    P          RGT FH  +    ++       
Sbjct: 968  LSATQLLRLAEDPDAF-ARELARPMPRPPQ----PAARRGTRFHAWVESRYEELPLPMLG 1022

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
                            E      +         ++      E    +      V  P ++
Sbjct: 1023 --------------PDELPGGDENDAEIADERDLAELKEAFERTPYARRTPYRVETPFQI 1068

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
             +      + G  D +        +I D+KT  +   +        QL++   A      
Sbjct: 1069 TLAGR--VIRGRIDAVYRTGD-RYEIVDWKTTRHRTADP------LQLAVYRLAWAE--L 1117

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
              +   +V+   ++ ++    +       +      L ++
Sbjct: 1118 HGLPLDEVS-ATFLYVRSGETVRPRDLPGRAELERILLDE 1156


>gi|256828188|ref|YP_003156916.1| exodeoxyribonuclease V subunit gamma [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577364|gb|ACU88500.1| exodeoxyribonuclease V, gamma subunit [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1064

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 97/946 (10%), Positives = 227/946 (23%), Gaps = 106/946 (11%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +   L     V     DP+ P      TI V +    + +  +     G  +     
Sbjct: 12  LENLAELLAE---VLKTPLDPMEPE-----TILVQSGGMQRWVSMQLARRHGVCAN---T 60

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
                         +L        P+S  + L  +  L+    ++      +  P +   
Sbjct: 61  RFPFPVGFAYALCRELRADLPREYPLSQERMLWRITHLLRGLLDE-----PEFAPLARYV 115

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHA--------LKNEKYGMW-WLLAADFL 188
              S   ++ LA+ +A   D       +W             L         W       
Sbjct: 116 QEDSELRSVQLAERIAYHFDQYLIFRPEWAARWENHEPSGNFLLPGHVASEAWQARL--- 172

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTGSIPATARLMS 247
                 W E + ++            + +  +          + + G     P    L+ 
Sbjct: 173 ------WRELIRDMGGEHRAALLRRAIASLEKGTSLPDLPSRVCVFGIPTLPPVYLDLLK 226

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            ++ H    + L          +      +       + +            L  L    
Sbjct: 227 ALSRHSQVHVFLLSPCQKYWGDLLTHRERRRAYRAGEHASPERPEDA---MPLAGLGAVG 283

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
           ++   L    + +    +               +   L+ +        + + +    + 
Sbjct: 284 KEFLELLMERDALET-GLYEEPVGDTMLGQLQADLLDLDVREEKTDFSDTSIQVHCCHSP 342

Query: 368 REEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL----TRFGINIDISAGI 419
             E   +   +   L ++     +   ++  D      V   +       GI   IS   
Sbjct: 343 LREMEILKDLILDLLAKDTSLSPQDILVMNPDIERYAPVIQAVFGTAGEDGIPFSISDRK 402

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
           P        +   LL       +   +  L++ P  +        S  +  LE V   G 
Sbjct: 403 PTKAAETIRLFLELLEFGQHRFEASRVCALLEAPPVRQRLG-LDASDTQRVLEWVRASGV 461

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
           +   D+   +   L         + +            +    +    L+          
Sbjct: 462 RWGLDLDFRRKAGLGDFGQNTWESGLSRLYLGYMTGAADPLGGIAPLALRGSAEQELLGR 521

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHR----KLPNLWFEEEGKTLSSLFSKIIETG 595
                    ++    + T T                  +    E    +    + +    
Sbjct: 522 VTAWIDELATLWSRLRDTRTPADWQDCLLWILDAFFPQDPAQAEHLLAIRKAVTDLTRDM 581

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              +A+A   + +I + +  E+       +S L   G    R + F  + L GL      
Sbjct: 582 GDFEADARTMLYLIRKRL-DESGGESGFLASGLTFCGLKPMRSIPFRVICLTGLT---ST 637

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN--GTRHLIYTRSL--RENNIPTI 711
               ++  L   + +         +     + F  +      +LI T     + +N+   
Sbjct: 638 AFPRQDIPLGFDLMAARPRPGDRSHREDDRYLFLESIISARDNLILTYPGLSQSDNLEAP 697

Query: 712 ASRWLQRLLVLGGT--------------------DFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            S  +  LL                          F  +    G     ++ +     + 
Sbjct: 698 PSVLVSELLDFLDRGCTVDGLTPSEAIVFKHKLQAFHPDYFSAGSPIFSYSAQNRDAAQA 757

Query: 752 PHYKRPK---------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD---FIPHF 799
              +                   Q       E+ + +  P     R +            
Sbjct: 758 LFAEHQSRQFFPEASTLEGAHAEQEIEIDIEELTRFLTHPCRHLLRALRIDPTGGEDDFL 817

Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
            ++P  T  G   +  + +L++  +++    +  L+  +                     
Sbjct: 818 DEEPLATPTGLEAYGPLQDLLRTALDEPAANLEGLL--LAWQLLPPGQAGTDASRKLCSQ 875

Query: 860 FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--ESIGIHLTGFAD 903
              ++            +   I    P ++ +      I LTG  D
Sbjct: 876 IRALADQ----------ARAVIGDEKPLRLDLKLPLGRITLTGRID 911


>gi|238796709|ref|ZP_04640215.1| UvrD/REP helicase [Yersinia mollaretii ATCC 43969]
 gi|238719440|gb|EEQ11250.1| UvrD/REP helicase [Yersinia mollaretii ATCC 43969]
          Length = 1136

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 85/944 (9%), Positives = 223/944 (23%), Gaps = 137/944 (14%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT--GK 70
            P +   + ++   + G L +              + +   + +A  E+      +     
Sbjct: 218  PGTGKTQTLV-GRVKGLLADGVDPR--------KILLLTFSNKAAGEMAERIARVDTEAA 268

Query: 71   KSTILPIIKSLGDVVEE-KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129
             +     I +      +        L+  L+P + +    +EL        + +      
Sbjct: 269  AAIW---IGTFHSFGLDLIRRFHDELNLPLDPRLLDRTEAVELLEHEFPILDLVHYRNLY 325

Query: 130  LYPESPLSLPISPANAIW---LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
                    +    + A      A     +   +       ED+   +             
Sbjct: 326  DPTRMIADILTGISRAKDEVVDANTYLALAQAMRDRAVGIEDIATAEKSI---------- 375

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-----GPIIIAGSTGSIPA 241
             +      +     +             ++   E+    +        +++        +
Sbjct: 376  EVARVYATYETLKRQARCIDFGDLVSLPVKLLEENEAILSHIQSTYEHVLVDEYQDVNHS 435

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            + RL+  +     G  +    D       +   +  +     +   +    +Y L     
Sbjct: 436  SVRLLKALCG--GGENLWVVGDAKQSIYRFRGASSFNMIHFGNED-FPGGLRYRLKMNYR 492

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             +                    S + ++        ++R  D    + P+I     ++  
Sbjct: 493  SVPEIVSAFSNFALNMTVGDADSGLCAERTSNAQKPELRCVDQGRLQTPSIADAIKEMQG 552

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
                                        A++         +  +L   GI +        
Sbjct: 553  SG--------------------YKYSDQAILCTGNEKLSEIGQQLEILGIPV-------- 584

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                       L +   +  +     TL+                  +   +  +R    
Sbjct: 585  ---------LYLGSVFERP-EIKDWLTLLS--------------LLVDRRAMGLVRIACL 620

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                M L  +       +++ T           +  +     ++ +++ ++      +  
Sbjct: 621  PEFTMSLDDVGSVLTHLREDETGSDWKTKIDDFQISDNGRTALNRLVKTLSGFSANDSPW 680

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
            N       + D T++      +       +    W  +    L +  S           +
Sbjct: 681  NVLATV--LLDRTRIAARMATSTHCSVRSQCIATW--QLLNFLRAQPSSGEGVFITRTLD 736

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
             I  +  +    D   +    +    + ++    ++ L F  + L G+N    P N  K 
Sbjct: 737  RIRRLVRLGDDRDLRQLPAAAQSIDAVRLMTIHGAKGLEFPVIHLPGMNADTLPGNPQKQ 796

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAA------HDFEMANGTRHLIYTRSLRENNIPTIA--S 713
                           A++              +   +     ++  +   N   +    S
Sbjct: 797  VCPPPNGMIAEGRSNAKEQFNLEYKAERECLFYVALSRAEDRLFLYATTRNAAGSTRKLS 856

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
             +L R+      +  + L                           P   + +     S +
Sbjct: 857  DFLNRIGSSLVQNNVEPLHA-----------------VIEKPESLPVDWVVSGDLVLSGA 899

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            +I    + P   +   IL++             D      N+  EL+     K T   + 
Sbjct: 900  QISLYESCPRRFFYTHILQIGGRRTPTPFLKMHD---AVRNVFQELVNTAPVKITDIEDR 956

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
            + +        +    P    +       +   F    E   S            M +  
Sbjct: 957  VTQAFTVEGLTEHGYAPEFKSL----AIDMVSYFASIRESHNSEAT-----CAFTMKLGE 1007

Query: 894  IGIHLTGFADRIDLLKSGF---VDITDYKTGDNPKKETAQKLID 934
              I +    D + +   G      +   KTG    KE +     
Sbjct: 1008 TSITI--QPDDVLVHPDGRKTFRRV---KTGHKRDKEESDLGAA 1046


>gi|221069392|ref|ZP_03545497.1| exodeoxyribonuclease V, gamma subunit [Comamonas testosteroni KF-1]
 gi|220714415|gb|EED69783.1| exodeoxyribonuclease V, gamma subunit [Comamonas testosteroni KF-1]
          Length = 1195

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 106/944 (11%), Positives = 251/944 (26%), Gaps = 85/944 (9%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L  T++      PL    L    + V +    +  +    E  G  +     + +     
Sbjct: 31  LADTVLAWLAAHPL--QALEPEIVLVQSNGMAEWFKMRMAEQQGVCAAAQVELPA----R 84

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
               +   +L  +  P  S + +   + RL+ +    L +      P +    P  P   
Sbjct: 85  FVWRSYRQILGRHEVPRESPLDKTPMIWRLMRLLPQCLGE--PAFAPIASFLRPAEPQRL 142

Query: 146 IWLAKNLADIIDIIETEEKK----WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + LA+ LAD+ D  +         WE    +          +    L    + W + L E
Sbjct: 143 LQLAEKLADLFDQYQIYRADWLAAWEQGEDVLRTAGRPDAPVPEGQL-WQPQLWRKVLAE 201

Query: 202 LNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
           L+       + AL+      L             +++ G +    +  + +S +A H   
Sbjct: 202 LDEQERAATRPALLARILGALQSGQPPVTPLARRVVVFGMSQMPLSLMQFLSGIAQHSQV 261

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNT---------TYSTHPQYSLAKLLDFLDIK 306
            I +P           +                         +    ++   L  +    
Sbjct: 262 LIAVPNPCRFHWADAIDGRELLRQQRRRHADKGGKDLAQIPLAAMHAHAHPLLAAWGRQS 321

Query: 307 REDVKRLG-----------------NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
           R+ V++L                  +V +E     ++ +               + E+  
Sbjct: 322 RDYVRQLDAFDTTGDTAVQWGWPRVDVYDEADASELIDAPLLTQVQQRIRDLVPMSEHPA 381

Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---------KKKSALITADRNLAR 400
             I      +   +A     E   +   L   L E           ++  ++      A 
Sbjct: 382 VEIAAADQSIVFHKAHGLVRELEVLHDQLLQWLAEPVAAGRAALAPREVVVMLPSIEEAA 441

Query: 401 RVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +           I  DI+     +++   + L  LL    +      +  L+  P
Sbjct: 442 PAIRAVFGQYGRHDARHIPFDIADVGARASSPLVTALQWLLKLPQQRCRLSELCDLLDVP 501

Query: 454 -------LAKFGFPEKYLSRAKNALELVALRGNKNSYD----------IMDLKSLVLDRI 496
                  LA    P+         +        +                 L+ ++L   
Sbjct: 502 AVAARVGLAADDLPQLTHWMVGAGIRWGLNHAQRAQLGLAACGDPNSAWFGLRRMLLGYA 561

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
           +           Q+    E  +    L   +   +  L+        T    + ++    
Sbjct: 562 SGPALEAAFDEAQAFAGMEPYDEVGGLTAELAGSLASLLGRMLQWWQTASTTAAAEVWAQ 621

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L +                    L    +   + G           +   + +   
Sbjct: 622 RFRSLMDDFFVAQGDEDQALCAALDTALVGWQAACEQAGFDALIPLEVAQEAWLQALSEP 681

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK-NPFLSRVMQSDLNLK 675
            +  +  ++  +     +  R + FD + L G+N+G +P+   + +  L  +        
Sbjct: 682 ALNQRF-RAGGVTFCTLMPMRAIPFDVVCLLGMNDGDYPRRATRVDFDLMALPGHQRPGD 740

Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKK 733
            A +   +      + +    L  + + R   +N     S  + +L        +     
Sbjct: 741 RARRDDDRQLMLDALLSARSKLYISWAGRHVRDNSEQPPSVLVSQLRDYL-RQGWQGEGS 799

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
            G C  +    L     + H  +P      E      +F+      ++  A  A  ++  
Sbjct: 800 SGLCASERGDLLLAQRTRQHPLQPFSRRYFEQASGLSTFAREWYGAHEQRAAQALPVVAT 859

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                            L H      ++ R+     +   L++       +       I 
Sbjct: 860 FEPDPEVPLTLARLTEFLRHPA-RSFLRNRLQVRFEQDEELLEDDELFSVDGLTAYGLIQ 918

Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
            + + +  +++H     +  +Q   +   +     + +  +G  
Sbjct: 919 QLQQGVRTQLAHD-AALDVGLQLQRQVQRLGRAGVLPLAGLGRR 961


>gi|295395902|ref|ZP_06806087.1| exodeoxyribonuclease V beta subunit [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971175|gb|EFG47065.1| exodeoxyribonuclease V beta subunit [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 278

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 61/187 (32%), Gaps = 18/187 (9%)

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIKK 822
            A+    S S     ++ P     R + K+         P      GTL H ++ +L   
Sbjct: 1   MAELIALSPSRANDFVSCPLKFRFRSVDKIPEP------PSAAAFKGTLVHAVLEQLFDV 54

Query: 823 RINKNTPEINHLMKQIIDSHFEKEN-------LPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
              + T +    + +   +   +EN                      +  ++   E    
Sbjct: 55  PSRERTLDHATTLIKPTYASLAQENSDVPDLFPEQTDRDRLFSESQALVRAYFALEL--P 112

Query: 876 SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935
            ++E        +  +   G+ L GF DR+D    G V + DYKTG  PK        D 
Sbjct: 113 QNLEPDAREKFVQTVLPG-GLKLRGFIDRVDRAPGGEVRLVDYKTGKAPKP-QYSGDADF 170

Query: 936 QLSLEAA 942
           Q+   A 
Sbjct: 171 QMRFYAL 177


>gi|291327137|ref|ZP_06127128.2| DNA helicase II [Providencia rettgeri DSM 1131]
 gi|291311697|gb|EFE52150.1| DNA helicase II [Providencia rettgeri DSM 1131]
          Length = 723

 Score = 95.8 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 68/686 (9%), Positives = 156/686 (22%), Gaps = 119/686 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
              T +A  E+R    ++ G          I +   +         + + NL      + 
Sbjct: 63  VTFTNKAAAEMRHRINQLIGTSEGGMW---IGTFHGLAHRLLRQHYMDA-NLPQDFQILD 118

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
              +  RLI      +    K   P   +       +                 E  + +
Sbjct: 119 SDDQ-YRLIRRLLKAMNLDEKQWPPRQGMWYINGKKD-----------------EGLRPQ 160

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HL 222
            + A  N     W            + + E              +               
Sbjct: 161 HIEAYGNPVEATWLK--------VYQAYQEACDRAGLVDFAELLLRAHELWLNKPHVLQH 212

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +     I++     +       +  +A      +++   D       W     ++    
Sbjct: 213 YRERFTNILVDEFQDTNNIQYAWIRVLAGETGKVMIV--GDDDQSIYGWRGAQVENIQRF 270

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            ++                            G  +  +       +      +     N+
Sbjct: 271 LNDFP--------------------------GAETIRLEQNYRSTNNILKAANALIANNS 304

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLAR 400
           D L   +         ++L  A NE +EA  +   ++   +     +  A++      +R
Sbjct: 305 DRLGKNLWTEGGDGEPISLYCAFNELDEARYVVGRIKQWHENGGALQDCAMLYRSNAQSR 364

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            ++  L +  +   I  G             S L  I   ND  +   +V  P    G  
Sbjct: 365 VLEEALIQGAMPYRIYGGQRFFERQEIKDALSYLRLIANRNDDASFERVVNTPTRGIGDR 424

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                R                               T ++              ++ L 
Sbjct: 425 TLDTVR------------------------------QTARDQQLTLWESCEYLLREQVLG 454

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
                 I + +  +            ++        +            +    +   EE
Sbjct: 455 GRAAAAIERFLELVDALAKETQDMPLHVQADRVINDSGLRAMYEQEKGEKAQARIENLEE 514

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
               +  FS   E    +   A      ++                 + ++    ++ L 
Sbjct: 515 LVNATRDFSYQDEDQDLMPLQA-----FLSHAALEAGDGQADVSQDAVQLMTLHSAKGLE 569

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
           F  + + G+ E           F S++   +      E+ +        M      L  T
Sbjct: 570 FPVVFIVGMEE---------GMFPSQMSMDESGRLEEERRLAYVGITRAM----EKLTIT 616

Query: 701 RSLREN----NIPTIASRWLQRLLVL 722
            +         +    SR++  L   
Sbjct: 617 YAESRRLYGKEVYHRPSRFIGELPTE 642


>gi|95929099|ref|ZP_01311844.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
 gi|95135000|gb|EAT16654.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
          Length = 676

 Score = 95.8 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 80/700 (11%), Positives = 176/700 (25%), Gaps = 95/700 (13%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVSNIQR 108
              T +A +E+R   +E  G+       I +   +       ++  L Y  N  +     
Sbjct: 54  LTFTNKAAREMRDRVVEQVGRGKAKGLTISTFHSLGVRILRQEIEQLGYKKNFSIYPTSD 113

Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
            L L R ++  R              P    + P   +WL     + +           D
Sbjct: 114 QLRLVRDMVQGRQL------------PSGGNVDPDRILWLISAAKNELVEANDYTANPRD 161

Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK- 227
            + +   +    +  +                 ++    +   I L    A+ L +  + 
Sbjct: 162 EYEVLTAEIYPRYQKSLK-----------ACNAIDFDDILLLTIRLFERFADVLDRYRQQ 210

Query: 228 -GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
              I++     +      ++  +++  +   V+   D       W      +      + 
Sbjct: 211 FRYIMVDEYQDTNHVQYHMLRLLSSAHHNLCVV--GDDDQSIYGWRGAKPGNILDFGKDF 268

Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                P   + KL                                   +   + N D   
Sbjct: 269 -----PGARVIKL---------------------EQNYRSTGNILAAANALIVHNQDRHG 302

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIAL---RMSLDENKKKSALITADRNLARRVK 403
            K+       +DV     D+  +EA+++   +   R       +  A++      +R  +
Sbjct: 303 KKLWTAGDAGADVVYRCCDDGEDEAMAVVEVIHRERFRHQYQYRDFAILYRTNGQSRAFE 362

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
            +L    I   +  G             + L  +    D + +  ++ +P    G     
Sbjct: 363 EQLRYENIPYVLIGGQQFFDRKEVKDALAYLKVMANPLDEVNLLRILNYPKRGIGET--- 419

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                  L   ++ G  + +D++   + +                     +        L
Sbjct: 420 ---TAERLIQASVVGECSLWDVLHHSAGIEGIGEKAGEAIQNFIALMERYQRRYRQPGQL 476

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
           V    +    L   +                +     +  V   E R        E   T
Sbjct: 477 VTTTQELFRELQLEEELYRQADDPKKARRRVENLHEVVNAVSSYEER--------EAIAT 528

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
           L S   K               + ++ R       K +  K   + ++    S+ L F  
Sbjct: 529 LESFLEK---------------VSLLDRDEPPRGSKEEKLKQDAVVLMSLHSSKGLEFPC 573

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
           + L G+ EG  P N           +  L      +   +       A   +        
Sbjct: 574 VFLVGMEEGSLPHNKTIEETQDVSEERRLCYVGITR--ARQQLTLLGAARRKK------- 624

Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                P   SR+L  +          + +       +   
Sbjct: 625 YGRLQPREVSRFLSEIPESLIFHEKGDRQAAPPEQQEAMA 664


>gi|154246916|ref|YP_001417874.1| hypothetical protein Xaut_2986 [Xanthobacter autotrophicus Py2]
 gi|154161001|gb|ABS68217.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
          Length = 884

 Score = 95.8 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 88/746 (11%), Positives = 188/746 (25%), Gaps = 95/746 (12%)

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
              +   +  I   +     S     +     I        ++  + A     EAI     
Sbjct: 166  PLLAALTAHIPVQWTAGPRSVPTWLESTGVTISRSPAHTPEIRAVSAATAYHEAIEAMRW 225

Query: 378  LRMSLDENKKKSALITADRNLARRVKLELT---RFGINIDISAGIPLSTTLHSSILTSLL 434
            +R  L      S +  A  + A      L       I++    G+    T       +L 
Sbjct: 226  VRSLLASGVSPSEIALATASPADYDDHFLALRADANIDLHFVHGVRTVATREGQAAAALA 285

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            + + +      +  L                           R       + +    VL 
Sbjct: 286  DIVVRGLSQSRLRRLAA-----------------------LCRDGGPFEALPEGWLRVLP 322

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
              A     +      +RL+ +D          +   +  L                    
Sbjct: 323  TDAPLSTPSAWNRLLARLTPDDWPDGANHAPTLRSAVEILAKGSDAAAEIGEAFLKGRAH 382

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
             +    L             +  +++G       + +    S + A+   ++ ++     
Sbjct: 383  AIWRKALLAGPAASIDATLEILKQDDGLEACVSVAWMP--ASALAASPRRFVRLLG---L 437

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              +  P+      L     + + +L+   + L    +      T     +    + D + 
Sbjct: 438  NSSRWPRGIAEDRLIPDHIIPTPVLDPLPVNLADRRDFKTILATTAGAVVLSRARRDSDG 497

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            +   +    A H              R+    +  +   R + R             +  
Sbjct: 498  RLLGRSPLLAGHG-------AETYLRRNATPAHAFSETDRLMARPQEFAADPQAIGAQGC 550

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
             + +          T      R      L    RT S S +++L+ +P            
Sbjct: 551  WRDWRQ-----TEITPHDGLVRADHPLVLAILDRTQSASSLRRLLRNPLTFVWIYAFGWR 605

Query: 795  FIPHFKKDP--DRTDRGTLFHNIITELIKKR------INKNTPEINHLMKQIIDSHF--- 843
                  +    D    G L H ++   ++         + +T  I   + +   +     
Sbjct: 606  EPQSSAEPLVLDALGIGDLVHLVLDRALRDLEIGGGLASADTDMIEIAVARAAQTVAADW 665

Query: 844  --EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------------- 888
              E+   P  I          ++   L +         + +  +P               
Sbjct: 666  ESERPVPPAVIWGRTLDDARALAGRALSY-GDDALPGARAYGEVPFGGSEPKSEAEAPWD 724

Query: 889  ----MAIESIGIHLTGFADRIDLLKSG-FVDITDYKTGDNPKKE-TAQKLIDPQLSLEAA 942
                + I   G ++ G+ DR+D+   G    + DYKTG  P+         + Q  L A 
Sbjct: 725  ATAPVTIPDTGFNIAGYIDRLDISGDGKRALVRDYKTGRTPQGNIRLNGGRELQRCLYAF 784

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
            A+KA     +            +           D +    + +  +    L      L 
Sbjct: 785  AVKALLGDDVA-----------ISASLLYPRDPVDLQLDDPEAVLTEITGYLRAARASLA 833

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028
            +G              +   +YD LA
Sbjct: 834  SG--------AALPGPDTGGDYDDLA 851


>gi|94496823|ref|ZP_01303398.1| hypothetical protein SKA58_16828 [Sphingomonas sp. SKA58]
 gi|94423836|gb|EAT08862.1| hypothetical protein SKA58_16828 [Sphingomonas sp. SKA58]
          Length = 905

 Score = 95.8 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 100/739 (13%), Positives = 202/739 (27%), Gaps = 105/739 (14%)

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
           LD   +          +         ++  P D         L  +           +++
Sbjct: 156 LDKLAQHHGIADADDPDFARLVSARREAAAPADRLVGHIQRGLLARTAQAMPLDDSFSVL 215

Query: 363 EADNEREE----AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
              +   E       I   LR + + +  + A+I  D +               +  SAG
Sbjct: 216 SVRDSLGECEAAVAIIQRWLRETPEISPAEIAVIVPDGSQHAAQLAG-------VAQSAG 268

Query: 419 IPLSTTLHSSILT--------SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
           + LS    S+             +  +      MA A+L+  P+  +  P    +     
Sbjct: 269 LLLSGLPASASARNIGAETIYLFVQCMNAPAPAMARASLLASPIMPW--PRNLGASMARR 326

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
           +              +D + LV                                      
Sbjct: 327 VMQGRGAITSGVDLGVDGRDLVQLLTGGGAK----------------------------- 357

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                           N   S   ++    L     D  R +            +     
Sbjct: 358 ---------------TNKQFSARLRVLRKLLGPSRPDIERDMAEAKRLITLLLRTLATRN 402

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
             +T      +A      + R   G            + +L + E+    F+ L++ G N
Sbjct: 403 EEDTPDWGALHATAGTYRLERESRGAFYSC------GVSVLHSGETPRRRFEKLVVLGYN 456

Query: 651 EGVWPKNTAKNPFLSRVMQSD------LNLKTAEKYI--GQAAHDFEMANGTRHLIYTRS 702
           EG +P    +N         +      L L T  + +  G      +++  +  ++   +
Sbjct: 457 EGNYPVAAPRNAVFLDSELDEIERACGLALPTRRRMLEDGLGRFVRQLSAASDEIVLLCA 516

Query: 703 LRENNI----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
            R+       P  +   L RL+                    W R LD+        + +
Sbjct: 517 ERDGYGKALFPASSLALLARLVAEVKDPEDLVTSLGRAGTSVWDRLLDWRVPPEFEPQVR 576

Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
           P PP                E +PR  S S +++L+  P A      L    +P   +  
Sbjct: 577 PQPPVHYDLGRNLLHLRLDEEGRPRPQSPSRLEKLLVSPLAWILEE-LDAAHVPWVPEAL 635

Query: 804 DRTDRGTLFHNIITELIKKRINK-NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
           D   RGTL H +   L K      N   I   + +++D     +                
Sbjct: 636 DVKLRGTLTHGVFERLFKAGETVCNPASIASRVPELLDECIAIDAPFMTGPAWTMER-DA 694

Query: 863 ISHSFLEHEEKIQSSIEKIFVNI---PAKMAIESIGIHLTGFADRIDLLKSGFVDITDY- 918
           +    +   E   + ++++   +      +  E +G  + G AD +  L  G   I D+ 
Sbjct: 695 MIGDTIRAAEGWAAILKELDAEVVANEFWLEGEVLGHPVHGKADTLLRLGDGQPVIVDHK 754

Query: 919 KTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
           K+G   +++  +   D Q+ L          S  +     +      + +  +     + 
Sbjct: 755 KSGSGKRRQRMEAGCDLQVELYRRMKVKNGKSGSETPGPEHAVLDAARGRAGVAYNMMND 814

Query: 979 KKYSADELSEKSLKNLIEI 997
                + ++  +   L   
Sbjct: 815 SGVLVNGVAGITAPGLETF 833


>gi|167855944|ref|ZP_02478692.1| Exodeoxyribonuclease V gamma chain [Haemophilus parasuis 29755]
 gi|167852938|gb|EDS24204.1| Exodeoxyribonuclease V gamma chain [Haemophilus parasuis 29755]
          Length = 1085

 Score = 95.8 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 72/752 (9%), Positives = 200/752 (26%), Gaps = 63/752 (8%)

Query: 27  NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86
              L+        NP   +   + V +    Q L+ +  +  G    +          + 
Sbjct: 13  QKNLLTAILAKDPNPDPFSQEIVLVQSLGMAQWLQMQIAQEIGVAGNV--QFPYPTSFLW 70

Query: 87  EKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
           +++    +L  +L    S  ++  L  L R+I  +              +          
Sbjct: 71  QQYR---VLFPDLPKENSFERQSMLWRLMRIIPQFLE-----QPAFEALASYLNQGDQLK 122

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---------------------WLL 183
              LA+ +AD+ D       +W  L      +  +                      W  
Sbjct: 123 QYQLAEKIADLFDQYLVYRPQWLVLWEKGQSQAVVDEIMRAVSFKQKNAKEIATNVAWQS 182

Query: 184 AA--DFLKIASKYWTERL-VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
                 +    +   E +    + +         +              I + G +    
Sbjct: 183 ILWNALVADIKQDSDEAIFNTSHRAYLQQRYFDKLDNLTATEKARLPKRIFVFGISSLPH 242

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT--ITEKSTNITSSNTTYSTHPQYSLAK 298
           +   ++  ++ H N  +                  + + +     S    +   +     
Sbjct: 243 SQLAVLKKLSEHCNVHLFFTNPSMEYWANDREDKVLEKLALKDNLSEAELAELFEKQGNP 302

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP--NIQKCF 356
           LL     + ++   L   +           +   P   + ++   +        ++    
Sbjct: 303 LLTVWGKQGKEFLNLLTETGIQDISLYNHFEDENPTLLTQVKKAILYSEHQTTFSLANED 362

Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLEL------ 406
             + L    ++  E   +   L    +           +++AD +        +      
Sbjct: 363 RSIQLHACHSKMREVEVLYNQLLYLFETYPDLSPKDIIVMSADIDSYAPYIKAVFSRYEK 422

Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYL 464
            R  I   +S           +    LL+          I  L      +  + F E+ +
Sbjct: 423 ERRYIPFTLSDQKISYINPIIASFLQLLSIKENKFSAEEILDLFDISAIREKYQFNEQKI 482

Query: 465 SRAKNALELVALRGN--KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
           +  +  ++ V +R      + +  +  S            +         +    + +  
Sbjct: 483 NTLREWIKSVGIRSGLKIENPEWQNYNSWENGLNRLLLGTSLKAENNGWQNILAFDESYG 542

Query: 523 LVDHILQCITPLVTYKTNKNST-CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
           L+  +   +   +   T  ++  C   S+S W +   T +     +  + +  +   +  
Sbjct: 543 LISELTGNLAKFIDNLTAWHAFICQPQSLSAWQEQLFTLVAQTYQENDQSIDAILTLQ-- 600

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
           + +  +  +I ++           +++ T+ +  +           +     L  R + F
Sbjct: 601 QAIRDVIEQIQQSHFEEAIGIDVMLELFTQQLSEQRSHLNFL-VGKVNFCTLLPMRAIPF 659

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYT 700
             + L G++EG +P+    N F           ++            E     +  L  +
Sbjct: 660 KVVCLLGMDEGEFPRQQTINSFDLMQYAPQKGDRSRRDDDRY--LFLEALLSAQQMLYIS 717

Query: 701 RSLRE--NNIPTIASRWLQRLLVLGGTDFFDN 730
              +   ++   + S  + +L      +    
Sbjct: 718 YIRQSLTSSQEKLPSVLVTQLFDYLKENLPKA 749


>gi|239932266|ref|ZP_04689219.1| hypothetical protein SghaA1_28841 [Streptomyces ghanaensis ATCC
            14672]
          Length = 317

 Score = 95.8 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 81/272 (29%), Gaps = 32/272 (11%)

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                 P + S S     +  P     R I +L          +   RGTL H+++  L  
Sbjct: 33   APAVPPASLSPSRASDFMQCPLLYRFRVIDRLPEK-----PSEAATRGTLVHSVLERLFD 87

Query: 822  KRINKNTPEINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHE 871
                + T      +         +          ++        W     ++   +   E
Sbjct: 88   APAAERTAPRAKALVPGQWERLRESRPEVAELFADDPEGERLARWLAEAERLVERWFTLE 147

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
                S +E     +  +  ++S G+ L G  DR+D+  +G V I DYKTG  P+     +
Sbjct: 148  --DPSRLEPAERELFVEAELDS-GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP-EYAE 203

Query: 932  LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
                Q+   A  +       +       L  + L     +                E+  
Sbjct: 204  GALFQMKFYALVVWR-----LKKVVPRRLQLVYLGSGDVLTYDPVPAD-------LERVE 251

Query: 992  KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
            + L+ +   ++          R S+      +
Sbjct: 252  RKLLALWDAIRTATGTGDWRPRPSK-LCGWCD 282


>gi|24379891|ref|NP_721846.1| putative exonuclease RexA [Streptococcus mutans UA159]
 gi|81588281|sp|Q8DT76|ADDA_STRMU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|24377868|gb|AAN59152.1|AE014982_1 putative exonuclease RexA [Streptococcus mutans UA159]
          Length = 1212

 Score = 95.8 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 102/905 (11%), Positives = 248/905 (27%), Gaps = 123/905 (13%)

Query: 147  WLAKNLADII---DIIETEEKKW-------EDLHALKN--------EKYGMWWLLAADFL 188
             LA ++A +I   + +     K+         L  LK+        ++      +   F 
Sbjct: 304  KLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFT 363

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATA 243
               SK + +  ++ NA          ++   E      L       +++     +     
Sbjct: 364  LDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQE 423

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS-------- 295
            R++  ++   NG       D       +     +  N    +     HP++         
Sbjct: 424  RMLELLS---NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDF--QEHPEHGKLILLKEN 478

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
                 + LD        L + +                         +  +  I + +  
Sbjct: 479  FRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQ 538

Query: 356  FSDVALIEADNER---EEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRF 409
             +    +E D+ +    E   +A  +    +E     +   L+ + R     +      +
Sbjct: 539  QNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDY 598

Query: 410  GINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
            GI +    G      ++   ++   L +I    +  A+  L++ P+  F   +      +
Sbjct: 599  GIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQ 658

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
            N  +       +   +  + +   +  I    +      +++ LS  +  L   L D I 
Sbjct: 659  NLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIW 718

Query: 529  QC------ITPLVTYKTNKNSTCGNLSISDWTKLTVTC-LQNVCLDEHRKLPNLWFEEEG 581
            +          + +   ++       +++           + +          L  + + 
Sbjct: 719  KIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDL 778

Query: 582  KTLSSLFS------KIIETGSCIKA----------------------------NAIEWID 607
              +             I     ++                               I++I 
Sbjct: 779  ADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIA 838

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
             +   ++ + +        TL      +  L          L      ++  K   + + 
Sbjct: 839  DMKEELEEKLLPTVKVSMDTL-PYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKG 897

Query: 668  MQSDLN-----------LKTAEKYIGQAAHDFEMAN----GTRHLIYTRSLRENNIPTIA 712
             Q  L            L  A++       D+ +A         L +  S   +   T  
Sbjct: 898  SQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTED 957

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQ--CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
                         D   + ++       LD    ++   +        P     +Q + +
Sbjct: 958  KMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKF 1017

Query: 771  SFSEIKQLINDPYAVYARRILKLD-FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
                ++    +      +   K +      K   D T  G+  H ++  L       +  
Sbjct: 1018 YEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLS-EQVSLE 1076

Query: 830  EINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI--QSSIEKIFVNIP 886
            +I   + ++ ++ + +K                KI H F   +     Q++ +K++   P
Sbjct: 1077 DILTALAELSVEENVKKAIQ-----------VDKILHFFQTSQLGKLIQANADKVYREAP 1125

Query: 887  AKM----AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
              M            + G  D   +L    + + DYKT      +  ++    Q++L A 
Sbjct: 1126 FAMLQADPASGEDYVVRGIIDG-YILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQ 1184

Query: 943  ALKAG 947
            AL   
Sbjct: 1185 ALSQS 1189


>gi|288959562|ref|YP_003449903.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510]
 gi|288911870|dbj|BAI73359.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510]
          Length = 1158

 Score = 95.8 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 97/914 (10%), Positives = 212/914 (23%), Gaps = 105/914 (11%)

Query: 89   FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD--LYPESPLSLPISPANAI 146
               D      +   +    R +                 +   +  +   + P +  +  
Sbjct: 255  SAGDQERGIAIQHWLDAADRRVRAFEAYKRLFLTAEGSPRKTLMTKKPATAYPQALTSLR 314

Query: 147  WLAKNLADIIDIIETEEKKWE--DLHALKNEKYGMWWLL-AADFLKIASKYWTERLVELN 203
              A+ L +I + ++          L  L       +    AA  L             L 
Sbjct: 315  KEAERLVEIAERVKAAGVAASTTALLTLAQAMLDAYRERKAARALLDYDDLILAANRLLG 374

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH----------- 252
                   ++        + + G    I+I  +  + P    +++ +A             
Sbjct: 375  GGDGKAPRV----PWVLYKLDGGLDHILIDEAQDTNPDQWAIVAALAGEFFAELEAAATD 430

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK---LLDFLDIKRED 309
                 V    D       +             +          L     L          
Sbjct: 431  GKIRTVFAVGDEKQSIFSFQRADPAEFARMRRHFQEKAESAERLWAGVDLDISFRSTAAV 490

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI---------QKCFSDVA 360
            ++ +  V      R  V S +         R       ++                  VA
Sbjct: 491  LETVDAVFALDRARDGVASDASPTIRHRAFRRGQAGLVELWPPVKPAEAVEAPAWAPPVA 550

Query: 361  LIEADNE-REEAISIAIALRMSLD------------ENKKKSALITADRNLARRVKLELT 407
               AD+     A  IA  +   +D                   L+         +   L 
Sbjct: 551  RESADSPSARLASVIAATVHRWIDGGEMLEAKGRPVRPGDVMVLVRRRTAFVTELVRALK 610

Query: 408  RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
              G+ +     + L+  L    L +L + +   +D + +AT++K PL        +    
Sbjct: 611  DRGVPVAGVDRMVLTEQLAVMDLVALADFLLLPDDDLTLATVLKGPLVGLDEEALFRVAH 670

Query: 468  KNA--LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                 L    +   ++       +  + D +A    +     +   L+            
Sbjct: 671  GRRGTLWRSLVALAESEPAFRPARRYLGDLLARTDFSAPYELFAGLLNRPCPADVRSGRR 730

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
             IL+ + P                + ++  + +   +        +    W       + 
Sbjct: 731  AILKRLGP-----------DAQDPLEEFLAVCLAFEK--TEPPSLQNFLAWLAASDAEIK 777

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                +   T   +  +  + +      +      P                        I
Sbjct: 778  RELEQGGGTVRIMTVHGSKGLQAPIVFLPDTLGSPTQSPP-------------------I 818

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
            L   ++   P   A+      +           +        +         +Y    + 
Sbjct: 819  LWPDDDCPVPLFAARRGQEDGLCAEARARANRRRDQEYRRLLYVALTRAEDRLYICGHQG 878

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
               P+    +      +  T    +    G     W  +            P+     E+
Sbjct: 879  KREPSDDCWYRLVEEAMRETGVPHSFDFTGLSPDGWAGEGWRLVGAQDVVVPRHVETEES 938

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD-----------RGTLFHN 814
                         I +P          L       ++P               RG L H 
Sbjct: 939  AATEPPPP----WIAEPAPGEPEPSRPLTPSRPDGEEPAVRSPLGADDGQRFRRGLLVHR 994

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            ++  L               + +       ++      + +      + +H F       
Sbjct: 995  LLQTLPNLVEEAREAACRRFLARPAHKLTPEQQDAIARETLAVLSHAEFAHLF------- 1047

Query: 875  QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKL 932
                 +  V +   + +      L G  DR+ L     V I DYKT   P +  E    +
Sbjct: 1048 -GPGSRAEVPLVGVVTLGDGSRTLAGRIDRLALAGD-TVWIVDYKTNRPPPRDLEDVPMV 1105

Query: 933  IDPQLSLEAAALKA 946
               Q++    AL+A
Sbjct: 1106 YRRQMAAYREALRA 1119


>gi|325982040|ref|YP_004294442.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
 gi|325531559|gb|ADZ26280.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
          Length = 1158

 Score = 95.8 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 83/818 (10%), Positives = 204/818 (24%), Gaps = 94/818 (11%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAG 234
                 L  A                       + A             +      ++I  
Sbjct: 359  AITRLLPNAVAQLKIIFQTSGFVDFSEVTQRALLALGDSEFPTDLALALDYRIQHLLIDE 418

Query: 235  STGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
               +  +  +L+  +       +G  +    D       +            +       
Sbjct: 419  FQDTSISQFKLIEKLIAGWEMGDGRSLFAVGDPMQSIYRFREAEVGLFLQARNTGIGHLV 478

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
             Q               D               +        P T+       +  K+  
Sbjct: 479  LQPITLSSNFRSQQGIIDWVNETFTQIMPVRDEIESGAVSYTPSTAIHSKLTEIAVKVYP 538

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENK-KKSALITADRNLARRVKLELTRFG 410
            +             N+  EA  +   ++ +  +      A++  +R+  + +  +L   G
Sbjct: 539  LLDK----------NQIVEARQVIEIIQQTRRDYPTNTIAILVRNRSHLQVIVQKLKESG 588

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            +         L        L  +  A+  L D +A   L++ P   F   +         
Sbjct: 589  LQFRAVDIELLHYRPVVQDLLIITRALINLADEVAWFALLRAPWCGFLLKDIDALLRSRK 648

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
             E                       I+       +          D   A   ++ +   
Sbjct: 649  EEDC------------------DTTISGTVLWKLIGDPNHWCYLSDDAKAR--IERLRDA 688

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            + P + ++  +       ++         C+  V       +   W +     +  L   
Sbjct: 689  LAPCIMHRQRQPLRMTVEAMWQALGG-PGCINPVIKKNRNDISATWSD----AMIFLDYL 743

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
              +  S    + I +   +  L   + V        +L I+   +++ L FDT+I+ GL 
Sbjct: 744  EKQEESGTIRDLIGFEKGLDALYASQDV----GADDSLQIMTIHKAKGLEFDTVIVPGLG 799

Query: 651  EGVWPKNTAKNPFLSRVMQS---DLNLKTAEKYIG------------------------- 682
                  +     ++ +       +  L   E  +                          
Sbjct: 800  REQRRNDKQLLKWIEQPHDRIKIESKLVNPELLLAPIQETGLDSDPIYRWMEKIDCKKEQ 859

Query: 683  -QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
             +A     +A              N + +   +++ +   +G          +   +   
Sbjct: 860  NEADRLLYVAVTRTRKFLHLLGHVNLVESEEGKYIPKKPAVGSLLHRLWPVMQLIYFDAA 919

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
             +       +   K  + F         Y   E   L + P +V    I +   +    +
Sbjct: 920  EKNTMGKNFKREDKDWEGFVNDIDNQGIYRLKEGWVLPDAPKSVAWNEIYETKQVQQDIE 979

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL-- 859
                ++      N++   +KK  +      +    +++   F++  L   ++   + +  
Sbjct: 980  FSWASEMARHVGNVVHRWLKKIADDELHTWDAARIRMMHGCFKQNLLADGMNGNDKEVEN 1039

Query: 860  -FHKISHSFLEH---EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
               +I  + +     E                ++        +    DR      G   +
Sbjct: 1040 AIDRIILALINTISDERGRWILGRHRHAKNELRVVGIVGNKLMNCVIDRTFNDSMGTRWV 1099

Query: 916  TDYKTGDNPKKETAQKLIDP-------QLSLEAAALKA 946
             DYKTG N +    +  ++        QL+  A  ++ 
Sbjct: 1100 IDYKTG-NHEGADIENFMNREQIRYYEQLNYYAKLMRQ 1136


>gi|88811692|ref|ZP_01126946.1| hypothetical protein NB231_04785 [Nitrococcus mobilis Nb-231]
 gi|88791083|gb|EAR22196.1| hypothetical protein NB231_04785 [Nitrococcus mobilis Nb-231]
          Length = 875

 Score = 95.8 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 90/774 (11%), Positives = 197/774 (25%), Gaps = 87/774 (11%)

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
             +       ++             +   Q+          I    +  L  V   +   
Sbjct: 96  QAMAQLEQAVLSRLPGGRLRPRELLAKALQHIDRASRLLGPITLRGMFELDPVWRPLLLE 155

Query: 324 SMVISKSFLPP--DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI---AIAL 378
              +         D+      +    K   I +    V+ +   N R EA+     A  L
Sbjct: 156 LAKVCPVRWEALPDSRPHWACNGARIKWQAISRATPQVSRVSCANPRHEALEALRWAREL 215

Query: 379 RMSLDENKKKSALITADRNLARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAI 437
             + +   ++ A+              +    G+ +  + G P  +T       +L   +
Sbjct: 216 LAADEVRPEEIAIAAPATAEWEPHIALIAAEAGLPVAFAGGRPALSTRDGQAAAALAEIL 275

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
            K      +  L+     +              +     R       ++ L    +    
Sbjct: 276 LKGLSRSRVQRLLSLVRGQTP--------LTAQVPPTWRRILPKDAPLLRLDQWRVCLAR 327

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                             D      L+  + Q    L   +       GN ++  W    
Sbjct: 328 A--------------VTADNGAVEGLLSVLEQLDRGLDAAEAIGELLLGNRALGIWRTAL 373

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                            L             + +    + + A    ++ ++     G  
Sbjct: 374 SE------GPAWGLDVTLERLRIKDDCEPATAILFGQAADLAACPRPYVWLLGLTSRGWP 427

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
              + +      +L          D + L   +   +            +  +  + +  
Sbjct: 428 RASQEDALLPAHVLAPAIL-----DPVSLTERDRRDFQAILHTTAKRLILSWARHDAEGR 482

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
           E            A   + +    +    +  +   R L R  V        + +     
Sbjct: 483 ENGES----ALLRAIDAKEIYRHDARVPEHAVSEPDRVLARPEVFAQQPRARSARACWLN 538

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI- 796
           +          T      R +      A  R +S + ++ L+ DP     R +L  +   
Sbjct: 539 WHRP-----QLTAHDGLLRAEHPAVRRALQRPFSATRLRALVRDPLGFVWRYVLGWEAPL 593

Query: 797 -PHFKKDPDRTDRGTLFHNIITELI--KKRINKNTPEINHLMKQIIDSHFE--------- 844
                   D    G L H ++   +   ++           ++Q +D+            
Sbjct: 594 VEREPLALDAQAYGNLAHQVLERALVRLEQAGGLAGATAGQVRQAVDAALADSVTEYEVN 653

Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK---------------- 888
           +   P  +    +    +++ + L +E +   + ++ F  +                   
Sbjct: 654 EPVPPRVLWRRTQAEIRQLALAALTYE-EPPLAGQRSFAEVAFGGGRAAHEADRPVPWHG 712

Query: 889 ---MAIESIGIHLTGFADRIDLLKSGFV-DITDYKTGDNPKKET---AQKLIDPQLSLEA 941
              + I    + +TG  DR+DL     V  +TDYKTG  P        +   + Q  L A
Sbjct: 713 ATAVRIPGTDLAITGRIDRLDLAADQSVARVTDYKTGKPPAPGKTVIVRGGAELQRCLYA 772

Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            A++A    Q+     A L Y              ++ +  A  L       L 
Sbjct: 773 FAVQALLGPQLVVE--ARLLYPGEPGTLLSMDAPRERLEEIAGYLVAAHEHLLT 824


>gi|300021793|ref|YP_003754404.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523614|gb|ADJ22083.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 818

 Score = 95.8 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 76/705 (10%), Positives = 184/705 (26%), Gaps = 122/705 (17%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGK---KSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
           + +     T +A +E+R     + G      + L    S+G                   
Sbjct: 111 SQILAVTFTNKAAREMRDRIGGLIGGTLEGMSWLGTFHSIG------------------- 151

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            V  ++R  EL  L   +     D    L  +   +  +      W A+ LA +ID  + 
Sbjct: 152 -VKILRRHAELVGLKSGFTILDDDDQVRLLKQVIEAARLDKDR--WPARQLAGLIDSWKN 208

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                + +   ++  +      A          +  RL +LNA       +  +R   EH
Sbjct: 209 RGLTPDKVPDGESFSFAAGKGAAL------YAAYQARLKDLNACDFGDLLLECIRLFREH 262

Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                        I++     +  A    +  +A        +   D       W     
Sbjct: 263 PDVLADYHRRFRYILVDEYQDTNVAQYLWLRLLAQGCPNVCCV--GDDDQSIYGWRGAEV 320

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            +      +                            G     +       +        
Sbjct: 321 DNILRFEKDFP--------------------------GAKVIRLERNYRSTANILAAASG 354

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITA 394
              +N   L   +       S + +    ++  EA +I   +       +K    A++  
Sbjct: 355 LIAKNAGRLGKTLFTDGSAGSKIGVANFWDDEAEARAIGEDIEQFQRAQEKLNDIAVLVR 414

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
             +  R ++      G+   +  G             +  + I   ++ +    +V  P 
Sbjct: 415 ASSQMRAIEDRFITLGLPYRVIGGPRFYERQEIKDAIAYFDVIANSSNDLKFERIVNVP- 473

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                            L    + RI        VP      + 
Sbjct: 474 ------------------------------KRGLGDTSIKRIHELARVQGVPL---YQAA 500

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
            +      L +   + +  L+            +  +D  +L       +    +  +  
Sbjct: 501 REIVETDELSNKARKSLGDLMQAFERWRGNLDRIRHTDLAELV------LDESGYTAMWQ 554

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                + +T      +++      +     +++ ++ ++D +    +      + ++   
Sbjct: 555 ADKSPQAQTRLENLKELVRFMHDFE-TLQGFLEHVSLVMDAD----QGSDGDRVSLMTLH 609

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G  EG++P   + +         +      E+    A      A   
Sbjct: 610 AAKGLEFGIVFLPGWEEGLFPHQRSLD---------ESGKAGLEEERRLAYVGLTRARRR 660

Query: 695 RHLIYTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
             + + ++ R +      + SR++  L           +   G+ 
Sbjct: 661 AKISFAQNRRTHGLYQSALPSRFVDELPEATVDVIESEMPYGGRA 705


>gi|291520409|emb|CBK75630.1| hypothetical protein CIY_31320 [Butyrivibrio fibrisolvens 16/4]
          Length = 389

 Score = 95.8 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 65/231 (28%), Gaps = 27/231 (11%)

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-- 820
            E +  + S S  +      Y  +   I+KL     F+      D G  +H  I      
Sbjct: 9   NEDETVSGSVSRFELYNECAYKYFLTYIMKLQEREKFE--LSSMDMGNFYHEAIQRYSDS 66

Query: 821 -----KKRINKNTPEINHLMKQIIDSHFEKEN----LPPHIDIIWRHLFHKISH---SFL 868
                KK    +  E    +   I+  FE  +    L                      +
Sbjct: 67  LKSDGKKWKEVSLEEREAYIDTAINQTFESMSKVSTLEDSTQKYIVESMKDTLRHSVDII 126

Query: 869 EHEEKIQSSIEKIFVNIPAKMAI---ESIGIH--LTGFADRIDLL--KSGFVDITDYK-T 920
             +       E        +  I   ++  +   L G  DRIDL       V I DYK +
Sbjct: 127 TTQVSR-GEFEPSIFEEKIEAEIRNYDTNELVAYLKGKVDRIDLTDSDDMAVRIIDYKSS 185

Query: 921 GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR--KVANLFYIRLKQKF 969
           G     E     +  QL +    +      +        + + Y  +  KF
Sbjct: 186 GHKLDLEECFYGLSMQLPIYMGVVLEKLKEKYPNATLHPSAMLYYEMANKF 236


>gi|306833580|ref|ZP_07466707.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338]
 gi|304424350|gb|EFM27489.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338]
          Length = 771

 Score = 95.8 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 86/694 (12%), Positives = 198/694 (28%), Gaps = 120/694 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R   + +    +  L  I +   +       D       N     
Sbjct: 54  NILAITFTNKAAREMRERAMALNPATADTL--IATFHSMCVRILRRD-ADHIGYNRNFTI 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++                +       +    I  AKN  D++D +  E
Sbjct: 111 VDPGEQRTLMKRILKNLN-----------LDPKKWNERAILGTISNAKN--DLLDEVAYE 157

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            +  +    +                    K + E L    A       +  +R   ++ 
Sbjct: 158 NQASDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNP 202

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  +  L +     ++ ++    V N    R              
Sbjct: 261 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANAVINNNRNRRPK----------- 304

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
                     K+         +    A +EREEA+ +A  +   + E     K  A++  
Sbjct: 305 ----------KLWTQNADGEQIVYYRARDEREEAVFVASTIDNIVREEGKNFKDFAVLYR 354

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + S LN I    D ++   +V  P 
Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNVIANTADNISYERIVNEPK 414

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                  G      I D  ++    +     N  +   + + ++
Sbjct: 415 RGV--------------------GPGTLEKIRDFANMQNMSLLDASANIMLSGVKGKAAQ 454

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
              +LA L           L+ ++ + +       +      T         +       
Sbjct: 455 AVWDLANL-----------LMKFRDDLDQMTVTELVEAVLDKTGYLDALRVQNTLESQAR 503

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  T++  F    E     ++   +    +  L           +++ + ++   
Sbjct: 504 IENIEEFLTVTKNFDDNQEDAPEDESGIDKLSRFLNDLALIADTDDGDAETAEVTLMTLH 563

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P + A               +  ++   +    +      
Sbjct: 564 AAKGLEFPIVFLIGMEEGVFPLSRA--------------AEDQDELEEERRLAYVGITRA 609

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723
             L++     TR+L         SR+++ +    
Sbjct: 610 EQLLFVTNANTRTLFGKTSYNRPSRFIREIDDEL 643


>gi|307825426|ref|ZP_07655645.1| exodeoxyribonuclease V, gamma subunit [Methylobacter tundripaludum
           SV96]
 gi|307733601|gb|EFO04459.1| exodeoxyribonuclease V, gamma subunit [Methylobacter tundripaludum
           SV96]
          Length = 1077

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 91/870 (10%), Positives = 216/870 (24%), Gaps = 92/870 (10%)

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
           +  ++          +           R  E+++ +    ++L   +  L     LS   
Sbjct: 94  IEALLRRLPGMTAETAPGSPRHFLPPWRS-EVSQSVGNRCDRLDGEVF-LPLTQYLSGEN 151

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT---- 196
                  LA+ LA I D  +           +        W       + A++ W     
Sbjct: 152 VALKRYQLAQQLAQIFDQYQ-----------MMRPDMLAAWQKGQLLHQTATERWQQAVW 200

Query: 197 -ERLVELNASSPV----GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
            +   +                L  AE           I + G     P     +  ++ 
Sbjct: 201 LQITEQTGNKHRGSLWLDVIAKLNAAEEGAFSAQLPERISVFGLNTMPPLFLSYLEGLSK 260

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           H    + L          + +     +    +       HP      LL  L  +  + +
Sbjct: 261 HCQLHLYLLNPAQDFWADLASKRQRANDENFT------GHP------LLSTLGQQGREFQ 308

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
            +     +          S    +   ++N  +  +      +    +++    +   E 
Sbjct: 309 EMLLEQAQFDLEPESFELSEAQNNLQRLQNGILNNSLDEQPLQKDDSISIHACHSRMREV 368

Query: 372 ISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
             +   L   L+ +     +   ++  D  +       +     +      + LS     
Sbjct: 369 EVLKNQLLQGLENDPTLELRDIVVMAPDIQVYEPFISAVFDDIQHAIADRSLRLSNNALD 428

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP----EKYLSRAKNALELVALRGNKNSY 483
           + +  L +       +  +  L++ P+   GF     +  L         V    +    
Sbjct: 429 AFIRFL-DLSQSRFGWQTVLDLLEQPVVYPGFGLSEVDLELINHWVQDTHVRWGKSAQHK 487

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA--VLLVDHILQCITPLVT----Y 537
             + L  L  +      +   + +      +   ++     +       +  L       
Sbjct: 488 QELGLPELSENTWQATLDRLLMGYAVGSDQDFVADVLPYRDIEGSSALALGGLCDFMQLL 547

Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                       + +W+         +              ++   L +  S  +     
Sbjct: 548 FKAGKELKQAKPLKNWSTQLYYYADQLLAAAEPV-----ERQQLNELLAELSAELAAVHN 602

Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                   I  +  ++          +   L     L  R + F  + L G+N+G +PK 
Sbjct: 603 DDVELQVIISWLEGMVAERKSSNGFLRG-QLTFCSMLPMRSIPFKVIALLGMNDGEFPKI 661

Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR-----SLRENNIPTIA 712
                F           ++  +   +      + +  + LI T      S  +   P++ 
Sbjct: 662 DRNPTFDLLAQHFRKGDRSR-RSDDRYQFLEILLSARQQLIMTYIGQSISHNDAIPPSVV 720

Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQC-------------------YLDWTRKLDYTTKQPH 753
              L  +L  GG     +  +                           +R+ D    Q  
Sbjct: 721 ISELLEVLQRGGDLITRHPLQPFSRRYFDGTSDVFSFSEADCETARALSRRGDRPVAQAD 780

Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI--LKLDFIPHFKKDPDRTDRGTL 811
                  PP   +      SE+      P   + +R   L+   +    ++ +      L
Sbjct: 781 LWWQGALPPETEETEVIELSELFSFFRHPQRHFMQRQMDLRFSGMEADAEEREPFSVAKL 840

Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
               I            P     ++                  +      ++ + F+E  
Sbjct: 841 EGYAIYHEWIHEALNGKPVAVKKLQAQGRWLAGVPG------ELEFDRQQQVINGFVER- 893

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
            K ++  E +       + I   G  L G 
Sbjct: 894 IKAKNLGEPLD---DLPVDISINGYRLVGK 920


>gi|297198514|ref|ZP_06915911.1| RecB family exonuclease [Streptomyces sviceus ATCC 29083]
 gi|197716174|gb|EDY60208.1| RecB family exonuclease [Streptomyces sviceus ATCC 29083]
          Length = 283

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 88/273 (32%), Gaps = 32/273 (11%)

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
                  P + S S     +  P     R I +L              RGTL H+++  L 
Sbjct: 1    MAAAVAPASLSPSRANDFMQCPLLYRFRVIDRLPEK-----PSAAATRGTLVHSVLERLF 55

Query: 821  KKRINKNTPEINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEH 870
                 + T  +   +         +          ++        W     ++   +   
Sbjct: 56   DAPAGERTAPVAKSLIPGQWDRLRESRPEVVELFADDPDGERLAQWLGEAERLVERWFTL 115

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
            E+  +  +E     +  +  ++S G+ L G  DR+D+  +G V I DYKTG  P+     
Sbjct: 116  EDPTR--LEPAERELFVEAELDS-GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP-EYA 171

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
            +    Q+   A  +       +  R++  L Y+        D +  D          E+ 
Sbjct: 172  EGALFQMKFYALVVWR--LKNVIPRRL-QLVYLGSGDVLTYDPVLAD---------LERV 219

Query: 991  LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
             + L+ +   ++   Q      R ++      +
Sbjct: 220  ERKLLALWEAIRQATQSGDWRPRPTK-LCGWCD 251


>gi|238796582|ref|ZP_04640089.1| Exodeoxyribonuclease V gamma chain [Yersinia mollaretii ATCC 43969]
 gi|238719560|gb|EEQ11369.1| Exodeoxyribonuclease V gamma chain [Yersinia mollaretii ATCC 43969]
          Length = 1138

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 90/781 (11%), Positives = 195/781 (24%), Gaps = 102/781 (13%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              + +  AL+    ++N               + V +    Q L+ +  +     + I 
Sbjct: 11  DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFTIAANIE 61

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
                L           +L         S      +L  L+      L D    L  +  
Sbjct: 62  ---FPLPATFIWDMFTRVLPGIPKESAFSKDAMTWKLMWLLP----DLLDDPVFLPMKRY 114

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKK----WEDLHALKNEKYGMWWLLAADFLKIA 191
           LS          LA  +AD+ D       +    WE    +++      W        + 
Sbjct: 115 LSDDGDKRKIHQLAARVADLFDQYLVYRPEWLEAWERGQLIESLDDAQQWQAKLW---VE 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249
              +T  L +             +R   +  +        + I G +   P   + +  +
Sbjct: 172 LTRYTRELEQPEW-HRANLYQRFIRTLLDSDVCPAGLPKRVFICGISALPPIYLQALQAL 230

Query: 250 ANHPNGAIVLPGLDCHIPTAIWN----------------------TITEKSTNITSSNTT 287
             H +  ++      +    I +                       +  +S    S   +
Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRKHYRESIEGKLLRGESLEGESVEVS 290

Query: 288 YSTHP------------QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS------- 328
              HP            Q     LL        D   L +  +++      +        
Sbjct: 291 LFRHPEQAEQLFNADGEQDLSNPLLASWGRLGRDHMYLLSQVDDIQEVHAFVDIEPDNLL 350

Query: 329 --------KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
                   +            T    ++   +      ++L    + + E   +   L  
Sbjct: 351 HGIQHDMLELEDHAIMGTTPETLAHSDQKRLLDPADRSLSLHVCHSPQREVEVLQDNLLR 410

Query: 381 SL----DENKKKSALITADRNLARRVKL-----ELTRFGINIDISAGIPLSTTLHSSILT 431
            L    +   +   ++ AD +                  +   IS               
Sbjct: 411 LLAADPELTPRDIIVMVADIDSYTPYIQATLGNATGERYLPFAISDRKASQAHPALQAFI 470

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           +LL+          +  L++ P     F   E  L R +  +    +R   +  ++ +L 
Sbjct: 471 ALLDLPQSRFTSEQVLALLEVPALANKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELS 530

Query: 490 -------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNK 541
                  +                           + +  L   +   +   L+     +
Sbjct: 531 LPATGQHTWHFGLTRMLLGYAMDSAAGDWQGVLPYDESSGLAAELAGQLADMLMQLSQWR 590

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                + S+SDW  L  + L      +      L   E  +    +    I         
Sbjct: 591 LLLSESRSLSDWLPLCRSLLDTFFESDSETEAVLVLIE--QQWQKVIGYGIAAQYPDLVP 648

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                D +   +D E +  +      +     +  R + F  + L G+N+G++P+     
Sbjct: 649 LNLLRDELASRLDNERISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGIYPRTLPPL 707

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQR 718
            F   +M   +      +         E      + L  +   R   +N     S  +  
Sbjct: 708 GF--DLMAKQVRRGDRSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSE 765

Query: 719 L 719
           L
Sbjct: 766 L 766


>gi|322372977|ref|ZP_08047513.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150]
 gi|321278019|gb|EFX55088.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150]
          Length = 775

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 86/690 (12%), Positives = 195/690 (28%), Gaps = 120/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R     +    +T   +I +   +       +       N     
Sbjct: 60  NILAITFTNKAAREMRER--AMALNPATSETLIATFHSMCVRILRRE-ADHIGYNRNFTI 116

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++             L P+       +    I  AKN  D++D +  E
Sbjct: 117 VDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLLDEVAYE 163

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            +  +    +                    K + E L    A       +  +R   ++ 
Sbjct: 164 HQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNP 208

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 209 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 266

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  +  L +     ++ ++    V      R              
Sbjct: 267 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANEVIKNNRNRRPK----------- 310

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
                     K+         +    A++ER+EA+ +A  +   + E     K  A++  
Sbjct: 311 ----------KLWTQNDDGEQIVYYRANDERDEAVFVASTINNVVREEGKNFKDFAVLYR 360

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + S LN I    D ++   +V  P 
Sbjct: 361 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPADNISFERVVNEPK 420

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G       R                              A +++ + +    + +  
Sbjct: 421 RGVGPGTLEKIRT----------------------------FAYEQDMSLLDASANIMLS 452

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             K  A   V      I  L     + + T    ++ D +           L        
Sbjct: 453 PIKGKAAQGVYDFANVILNLRDQLDDLSITEVVEAVLDQSGYLDALSMQQTL---ESQAR 509

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  +++  F +     +  +         +  L           +++ + ++   
Sbjct: 510 IENIEEFMSVTKNFDETNTDETEDETGIDRLGRFLNDLALIADTDDGDVEAAEVTLMTLH 569

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P + A         +  L               +      
Sbjct: 570 AAKGLEFPVVFLIGMEEGVFPLSRASEEPDELEEERRLA--------------YVGITRA 615

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRL 719
             +++     TR+L         SR+L+ +
Sbjct: 616 EEILFLTNANTRTLFGKTNYNRPSRFLREI 645


>gi|271969568|ref|YP_003343764.1| superfamily I DNA and RNA helicase-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270512743|gb|ACZ91021.1| Superfamily I DNA and RNA helicase-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 1228

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 93/921 (10%), Positives = 223/921 (24%), Gaps = 94/921 (10%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGK-------KSTILPIIKSLGDVVEEKFTADLLLSYN 98
            V     T++A  EL     E            + +L    ++       + A L+  + 
Sbjct: 62  QVLGLTFTRKAAGELAIRVRERLNGLVAAEQVPAELLEGEPTIS--TYHAYAARLVTDHA 119

Query: 99  LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID- 157
           L   +    RL+  A    +    +      +               + LA  L++ +  
Sbjct: 120 LREALEPTMRLVSPAVSWQLAVRVVSAYDGPMEQIEW-GPATVTRAVLELAGELSEHLRG 178

Query: 158 --IIETEEKKWEDLHALKNE-----KYGMWW-LLAADFLKIASKYWTERLVELNASSPVG 209
              +        D +          +        A + L    + +              
Sbjct: 179 PQDVREVGAWLADRYGELPGSPTLPQRRPLATQRAREQLLPLVEAYDRLKRSREVVDHGD 238

Query: 210 YQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                 R  A+H       +G    +++     +  A   L+ ++     G  V    D 
Sbjct: 239 QMALAARIAAKHAEVGEIERGRFAVVLLDEYQDTSHAQLVLLRSLFG--GGHPVTAVGDP 296

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL-------LDFLDIKREDVKRLGNVS 317
                 W   +  +      + T ++     + +L          LD+       L   +
Sbjct: 297 CQSIYGWRGASAGNLTRFPRDFTTASGELAPVRRLSISFRNGDAVLDVAARVQLPLRMEA 356

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN--------IQKCFSDVALIEADNERE 369
            E+       ++            T   E              +     +   E   ER+
Sbjct: 357 REVPVLVPGGNRVERGRVVCAFHETADDEAAWVADGIARVLGGESAPDGMPWGE--GERK 414

Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
           +A   A      L       A++   R+    ++  L   GI +++     L T    S 
Sbjct: 415 KAKQSAWGGPQCL--QPHDVAILARKRSQFPALRRALEERGIPVEVVGLGGLLTVPEVSD 472

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           + + L  ++      A+  L+  P  + G  +      +        R   +      L 
Sbjct: 473 IVATLRVLYDPTAGDALVRLLSGPRWRIGPADLKELGERARELNRETREGGSMAS-DPLD 531

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
            +V D    + +             E ++L   L    L  +   +              
Sbjct: 532 QVVADMAEERGSLIDALDEL-PDRPEWQDLFSPLARVRLLAMAQELRILRAHTGQPLPDL 590

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
           I +  +     ++               + +    ++           + A         
Sbjct: 591 IIEIERRLGLDIEVAARGTAIGPFAARADLDAFLDAAARFAGDSEDPTLGAFLAFLKA-- 648

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE------------------ 651
               +      ++ +S+++ ++    S+ L +  +++ G+++                  
Sbjct: 649 ADEEENGLDAGRVGESNSVKLMTIHASKGLEWPVVVIPGMSQALSKAGTLTVGTMFPARP 708

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKT-----------------AEKYIGQAAHDFEMANGT 694
              PK T     L   ++ D +                     ++ + +      +A   
Sbjct: 709 TTSPKWTDNPRKLPYPLRGDASDLPRLGGLSKEELAEFDERCRDRDLLEERRLAYVAVTR 768

Query: 695 RHLIYT---RSLRENNIPTIASRWLQRLLVLGGT-DFFDNLKKRGQCYLDWTRKLDYTTK 750
            H +             P   S +L  +    G    +      G          +    
Sbjct: 769 AHYLLIASGYRWGSAAKPLEPSDFLVEIRETCGRVSVWAPEAGEGATNPLLAEPAEAGWP 828

Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                         A     + + +     DP A       +           +      
Sbjct: 829 VTPDGLRYEAVLDGATMVEAALAALAGQGGDPAA------SRPRDGSAQAPGAENAPFSD 882

Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
                  ++  +      PE       +     E  + P   +   R      + +  E 
Sbjct: 883 FSDIPFPDVPPEDEEVPFPEAPEDEDVLFLEVPEFFDDPDDEEATSRARQDVSAEAVHEA 942

Query: 871 EEKIQSSIEKIFVNIPAKMAI 891
             +      ++    P    +
Sbjct: 943 VHEAVHEGGRVPGEEPGNGHV 963



 Score = 64.6 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 79/743 (10%), Positives = 190/743 (25%), Gaps = 58/743 (7%)

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK---REDVKRLGN 315
            L  +   +     + I                 P   +  L    +++       + L +
Sbjct: 530  LDQVVADMAEERGSLIDALDELPDRPEWQDLFSPLARVRLLAMAQELRILRAHTGQPLPD 589

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
            +  E+  R  +  +                 +   +    F+  +      +      +A
Sbjct: 590  LIIEIERRLGLDIEVAARGTAIGPFAARADLDAFLDAAARFAGDS-----EDPTLGAFLA 644

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                   +EN   +  +    ++              + +  G+  + +   + LT    
Sbjct: 645  FLKAADEEENGLDAGRVGESNSVKLMTIHASKGLEWPVVVIPGMSQALSKAGT-LTVGTM 703

Query: 436  AIFKLNDFMAIA---TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
               +             + +PL +    +       +  EL          D+++ + L 
Sbjct: 704  FPARPTTSPKWTDNPRKLPYPL-RGDASDLPRLGGLSKEELAEFDERCRDRDLLEERRLA 762

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
               +           ++   + +  E +  LV+    C    V            L    
Sbjct: 763  YVAVTRAHYLLIASGYRWGSAAKPLEPSDFLVEIRETCGRVSVWAPEAGEGATNPLLAEP 822

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                       +  +       +                        A A    +     
Sbjct: 823  AEAGWPVTPDGLRYEAVLDGATMVEAALAALAGQGGDPAASRPRDGSAQAPGAENAPFSD 882

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                       +   +                      E     +   +   +   + D+
Sbjct: 883  FSDIPFPDVPPEDEEV--------PFPEAPEDEDVLFLEVPEFFDDPDDEEATSRARQDV 934

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
            + +   + + +A H+     G         +     P    R +       G +    L 
Sbjct: 935  SAEAVHEAVHEAVHEGGRVPGEEPGN--GHVLPEGEPGPEHRRVPEEGQEPGNERAGALA 992

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRP---KPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                   +  +  +  T+    +R    +        P   + S +  L +DP  + AR+
Sbjct: 993  DLRGWDKERAKAWERDTELLLRERAVNRRRGGGQVELPTHLTVSSLVTLASDPKTL-ARQ 1051

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
            + +               RGT FH  +     +                     ++  LP
Sbjct: 1052 VRRPVPRKPTPL----ARRGTSFHRWLESRWGQ-----------------QRLLDEMELP 1090

Query: 850  PHIDIIWRHLFH--KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL 907
               D          ++   F E E    +  E + V +P +  I      + G  D +  
Sbjct: 1091 GSSDGFEETDIQLDQLRDRFEESEW---AGREPLDVEVPFETMIADR--LVRGRMDAVFE 1145

Query: 908  LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF-YIRLK 966
            L  G  ++ D+KTG  P+ + A+     QL+    A      + +   +V+  F ++RL 
Sbjct: 1146 LPDGRYEVVDWKTGQRPEGKKAEAAAAVQLAAYRLAWSH--LADVPLAQVSAAFHFVRLN 1203

Query: 967  QKFKIDCITNDKKKYSADELSEK 989
            +  +   + +++      E    
Sbjct: 1204 ETVRPVNLLDERGLVRLIESIPA 1226


>gi|119775035|ref|YP_927775.1| exodeoxyribonuclease V subunit gamma [Shewanella amazonensis SB2B]
 gi|119767535|gb|ABM00106.1| exodeoxyribonuclease V, gamma subunit [Shewanella amazonensis SB2B]
          Length = 1163

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 120/964 (12%), Positives = 254/964 (26%), Gaps = 126/964 (13%)

Query: 44  LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           LA+  I V +      LR E     G  + +      L           LL         
Sbjct: 29  LATEQILVQSPGMATWLRLEIAAHNGIAAALS---FPLPSNFIWSLCYALLPGVPKENAF 85

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           +      +L  L+     K         P        SP     LA  +ADI D      
Sbjct: 86  TKDAMTWKLMALLPRLIEK-----PHFEPLRDYLSSDSPLKLFQLASRVADIFDQYLVYR 140

Query: 164 KKWEDLHALKNEKYGM---------------WWLLAADFLKIASKYWTERLVELNASSPV 208
             W     L                       W       +   +Y  + L + +     
Sbjct: 141 PDWIVTWELGENDLSPTGSPLTQGAALPDNCLWQPLL--WRALVQYNRDELGQSHWHRAN 198

Query: 209 GYQIALMRA-EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
            +Q  +         +      + + G +   P T  ++  + +     ++         
Sbjct: 199 LHQALVAALSNPNTDISALPRRLFVFGISSLPPQTLEVLYALGSRIPVTMLSLSPCRQYW 258

Query: 268 TAIWNT-ITEKSTNITSSNTTYSTHPQYSL--------------AKLLDFLDIKREDVKR 312
             I ++ +  K      ++     H + +L               +LLD +     +   
Sbjct: 259 GDIVDSKLRAKLALKYKAHKMLPEHWEETLEVGNPLLAANGKMGRELLDLVLSLPPEHFT 318

Query: 313 LGNVSNEMYGRSMVISKSF--------LPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
           L +   E    S ++ +                              + +  + + L   
Sbjct: 319 LDDSGYETNDDSHLLGRLQNDILDMEVAGAPLCADLARYQSNEGKFLLDEQDNSLVLRSC 378

Query: 365 DNEREEAISIAIALR-----MSLDENKKKSALITADRNLARRVKLEL-----TRFGINID 414
            +   E  ++   L           + K   ++  D          +         I   
Sbjct: 379 HSPLREVETLHDHLLGLLSDRQGRLSAKNIVVMLPDVAAYAPFIDAVFASRRGEHYIPYA 438

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLSRAKNALE 472
           I+    +  +       +LL+          I  L++ P     F   E+ LSR  N L 
Sbjct: 439 IADRGAVEESPLIHGFLTLLDINHSRFGLSEILGLLEIPAVMAKFKLDEEELSRLGNWLS 498

Query: 473 LVALRGNKN--------------SYDIMDLKSLVL-DRIATQKNNTHVPHWQSRLSEEDK 517
              +R  ++                    ++ L+L   +  + +  H     + +  +  
Sbjct: 499 EAGVRWGRDAQSREKLGLPAFDKHSWAFGIRRLLLGFSLGDEGDFYHGTLPFAGVEGQQA 558

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +    L+D I         +    + T     +S  T      L      E+++  NL  
Sbjct: 559 QCVGKLLDFIEHLDEFAARFAAADSLTLKFAELSRLTDTLFAPL-----PEYQEELNLIR 613

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           E    T  +L S      S    +       +   +    V  +     ++     +  R
Sbjct: 614 ETLCDTQKALQSSASSESSLSDISLEVICQTLGSKLTDARVGQRFLAG-SVNFCTLMPMR 672

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            + F  + L G+NEG++P+      F             + +   +      + +    L
Sbjct: 673 SIPFKVVCLLGMNEGIYPRVQHPVGFDLMAKTPARRGDRSRRLDDRYLFLEALLSAREQL 732

Query: 698 IYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------FDNLKKRGQCYLDWTRKL---- 745
             +   R   ++   + S  +  LL               N   + Q    +  +L    
Sbjct: 733 YISFIGRSERDDSERLPSMLVSELLDCCELSAYVSQGKLVNRLVKQQPLQPFDHRLYLTN 792

Query: 746 -------------DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                          T     +         E + +    + + +   DP   + +R L+
Sbjct: 793 QDITASFAAQWCPQETRPPKPFIDAVLDEVDEDEHKVLELASLIRFYRDPARFFCQRRLR 852

Query: 793 LD---FIPHFKK----DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII-DSHFE 844
           LD    +         D D   R  L   ++   ++    +    ++ L  ++       
Sbjct: 853 LDLSHRLDALDDSEPFDVDALGRYQLQDKMLNAALEADEIRQQLAVDTLCDRLAGAGVLP 912

Query: 845 KENLPPHIDIIWRHLFHKISH--SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                  +   ++     I     F+  E + QS        +   + +   G  L G  
Sbjct: 913 MAPFDKLLFASYQRDLAPILDRCRFIMGETEGQS--------LRISLVLN-QGHKLVGTI 963

Query: 903 DRID 906
           D++ 
Sbjct: 964 DKVF 967


>gi|322385777|ref|ZP_08059421.1| exonuclease RexA [Streptococcus cristatus ATCC 51100]
 gi|321270515|gb|EFX53431.1| exonuclease RexA [Streptococcus cristatus ATCC 51100]
          Length = 1223

 Score = 95.4 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 107/962 (11%), Positives = 223/962 (23%), Gaps = 106/962 (11%)

Query: 81   LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
            L D  +     +           +    L  LA L     ++    +   + E   +   
Sbjct: 249  LEDFFQSHLAHEGQAFAGAKYQENIQAALDILAELTEQTGSEQLLDLIQRFLELAKTSNH 308

Query: 141  SPANAI--WLAKNLADIIDIIETEEKKW--EDLHALKNEK-----YGMWWLLAA------ 185
                A     A  L   I     E +K   E +  L                A       
Sbjct: 309  QAFTARVGKNADELKKEIAQAYNEARKPLIERIKELDVRLYHLNFMEQHQSEALPLLDLL 368

Query: 186  -DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT-----KGPIIIAGSTGSI 239
             DF++  S+ + ER V  NA          +     +             +++     + 
Sbjct: 369  RDFVRDFSQAYLERKVAENAFEFGDISHFAIEILENYPEVRRFYQDKYHEVMVDEYQDTN 428

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS---- 295
                R++  +A   N  +V    D       +  +  +  N        +   Q      
Sbjct: 429  HTQERMLELLARENNRFMV---GDIKQSIYRFRQVDPQIFNDK-FKLYQADPSQGKLIIL 484

Query: 296  ---LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
                   ++ L+   +  KRL +        +         P   +    +  E  + + 
Sbjct: 485  KENFRSHIEVLEATNDVFKRLMDEEIGEIDYNETHYLVAGNPAKREPNPANQAEFLLYDG 544

Query: 353  QKC---FSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELT 407
                        + + +  E A+ I   +R+   E  + K   L+TA R     +  E  
Sbjct: 545  SADSEEEDSDQGLPSISAGEVALVIKEIIRLHNQEGVDFKDITLLTASRTRNDLILAEFD 604

Query: 408  RFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
            R  I I    G      ++   ++   L  I    +  A+  L+K P+  F   E     
Sbjct: 605  RHHIPIVPDDGETNYLQSVEVMVMLDTLRTINNPLNDYALTALLKSPMFDFDEDELARLA 664

Query: 467  AKN---ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
             +              +N+     L   ++     +K            S         L
Sbjct: 665  LQASSTKSMENLYEKLRNALADQGLGPQLIHGELRKKLQHFQETLNDWRSYSKTHSLYDL 724

Query: 524  VDHI---LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
            +  I         +      +       ++S                    +  +   E 
Sbjct: 725  IWKIYQDRFYYDMVGALPNGEQRQANLYALSLRANDYEKSSFKGLSRFISMIDRILKNEH 784

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
                S   +        +  +  + ++     +         + SS+  IL   +   + 
Sbjct: 785  -DLASVPLAAPKNAVQLVTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRQKGIGI- 842

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LI 698
               +    L              +  +       +     + +      +A       L 
Sbjct: 843  -KYVADVDLEAQGPHAPKQIRISMETLPYQQNAEELKLASLSEQMRLLYVAMTRAETKLY 901

Query: 699  YTRSLRENNIPTIAS--------------------RWLQRLLVLGGTDFFDNLKKRGQCY 738
                 ++  +                          WL  +  + G +      +     
Sbjct: 902  LVGKGKQAKLQERKWGTSQNGRLSSSLRSQLTNFQDWLYAIQSVFGKENLAYQTRFVTDQ 961

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF----------SEIKQLINDPYAVYAR 788
                 ++    +             +++    +           S  +  I  P      
Sbjct: 962  ELTDEQIGLVEQVDPIPVDDLTGNRQSEDIRRALDILENVDRLNSLYQAAIELPSVRTPS 1021

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
            +I K        +  D  D     H            K        +   +    ++  L
Sbjct: 1022 QIKKFYEPVMDSEGLDIMDAPRS-HQTQLTFDLPDFGKKKQVTGAQIGSAVHELMQRIPL 1080

Query: 849  PPHI------DIIWRHLFHKI---------SHSFLEHEEKI--QSSIEKIFVNIPAKM-- 889
               I        + +                 +F   E     Q     +    P  M  
Sbjct: 1081 DRPITKTSIRQALAQVQVDAAVKKEIDLAKIEAFFATELGQLIQHQSNHLHREAPFAMLK 1140

Query: 890  --AIESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
                      + G  D   +       + + DYKT          +    QL L A AL 
Sbjct: 1141 QDPASGQDFVVRGILDGYLLF---DDHIVLFDYKTDRYHDPAELVERYRAQLDLYAEALS 1197

Query: 946  AG 947
              
Sbjct: 1198 RS 1199


>gi|88797061|ref|ZP_01112651.1| exodeoxyribonuclease V, gamma subunit [Reinekea sp. MED297]
 gi|88779930|gb|EAR11115.1| exodeoxyribonuclease V, gamma subunit [Reinekea sp. MED297]
          Length = 1080

 Score = 95.4 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 109/904 (12%), Positives = 247/904 (27%), Gaps = 85/904 (9%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTI-----LPIIKSLGDVVEEKFTADLLLS 96
             L +  + V        L  E  + +  +  +     LP ++   D++      D +  
Sbjct: 27  EPLTADAVLVQHPGMQHWLSMELAKQSSNQLCMNITYPLP-VRYFWDLIRLILGPDRVPE 85

Query: 97  YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156
            ++        RL  L +   I  N L       + E P  L  S      LA+ LAD+ 
Sbjct: 86  RSVYTREILAWRLYHLLQQDAITANPLMLEPNRYWQEQPAYLQDS--RRFQLAEQLADLY 143

Query: 157 DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
           +        W        E     W             W   LV+ +   P+       R
Sbjct: 144 EQYLMYRPDW---IEHWQESPAEHWQALL---------WKA-LVDEDPQHPLALMREASR 190

Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
               H  +       + G     P     +S +A   +  I +  L+       W+ +  
Sbjct: 191 RL-SHPAQPLPSHFFVFGINSLAPIWLDFLSHLARSTDTDIHILYLNP--SAEHWDQLHT 247

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS-------- 328
           +   + +      +  Q +     D L     D   L ++  +       +S        
Sbjct: 248 EKQALKTRLRQQQSAQQRASWIDDDALFTDEADNPLLTSLGQQGQVFVRQLSDKADYDAQ 307

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCF------SDVALIEADNEREEAISIAIALRMSL 382
               P   + ++        + + +           + +  A +   E   +   L    
Sbjct: 308 AFSAPEAETQLQTLQRDLLTLHDARSQPHTLDHDGTLMISSAHSAFREVQGLHDWLLHRF 367

Query: 383 DEN----KKKSALITADRNLARRV--------KLELTRFGINIDIS-AGIPLSTT-LHSS 428
           + +     K   ++  +                 EL+     +  S A   L       +
Sbjct: 368 NADPTLTPKDVLVMCPNVEDYAPFVQAVFSRSFAELSEAVPPLPCSIADRNLKDADPTVA 427

Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLSRAKNALELVALRGN-----KN 481
               LL+      +   + + ++ P     F      L R    LE   +        K 
Sbjct: 428 AFLELLSLPDTRFEVSRLISWLRIPAIADKFNLSADDLQRITRWLERANIHWGLDGQHKA 487

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
            +   +       +    +      +        D+ L   +       +  L +     
Sbjct: 488 QWTGQECTDHFTWKQGLDRLLLGFAYGDHDAFVHDELLLHDVEGADALILGRLTSIIEQL 547

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
            +   +L+ +       + L +          + +       L ++              
Sbjct: 548 QNIRSDLTRARTPSAWQSYLIDQLQIAMLSTQSAYERSNQSILKAINDFTEFANKANLEQ 607

Query: 602 AIEWIDIITRLIDGETVKPKIEKS----STLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
               + ++  +++     P+   S      + +   +  R + F  + + GLN+G +P+N
Sbjct: 608 TDLPLSVVRYVLENAFASPEQTGSQFMTGQITVCSMVPMRSIPFRVVAILGLNDGDFPRN 667

Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRW 715
                F     Q       + +   +      + +   HL  +    +   N     S  
Sbjct: 668 RPPLGFDLMAQQPPRLGDRSRRGDDRYLFLEALLSARDHLYLSYQGFDIRKNEARPPSLV 727

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWT--------RKLDYTTKQPHYKRPKPFP------ 761
           L+ L       +     +  +                  +  +  H +RP+P        
Sbjct: 728 LEELFSYLERGYGFERARHIRQLPLQPFSPKNYQGEYPSFNDQWIHLQRPEPEQELLNLL 787

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH----NIIT 817
           P      + S  +  +  + P   +  + L L       ++ + ++  TL H     + T
Sbjct: 788 PATDLSPSESIHDWVKFFSHPARAFCEQRLGLYLNNTTTENLEDSEPFTLNHLDRYQLQT 847

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
           E +   +N+ +P++    +    S F   +L       W+          +  E   +  
Sbjct: 848 ETVSALLNQESPDVLIQ-QAKAASAFPLSDLALTTAETWQQQAASF-TDLVRAEGADRIE 905

Query: 878 IEKI 881
              +
Sbjct: 906 YRPV 909


>gi|219852269|ref|YP_002466701.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
 gi|219546528|gb|ACL16978.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
          Length = 921

 Score = 95.4 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 91/877 (10%), Positives = 219/877 (24%), Gaps = 144/877 (16%)

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMK 224
              L  ++      L   F     + + + L   +     G     + A  E        +
Sbjct: 153  ADLVRDERIDPAGLGLPF-CECYRAYLDHLQADHYIDFTGMIAHYVEALEEDPALLARER 211

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
            G    +I+            L+  +        V+   D       W     ++     +
Sbjct: 212  GRVRYLIVDEYQDINTLQEELIRLMVGSTGNLSVV--GDDDQCIYHWRGSNYENIISFGT 269

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                           +  + I++      G +S     R +  ++  LP           
Sbjct: 270  RYPD-----------VTTVRIQQNFRSTPGIISAAS--RVIDRNELRLPKMMEPWPEGLG 316

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISI-----AIALRMSLDENKKKSALITADRNLA 399
               +         D+A    D+E EE   I     A+  R  ++   ++  L   D  + 
Sbjct: 317  QTEE--------GDIATCFFDDEEEEVAGIVGQIQALLGREYINNQGEERTLSYRDMAVL 368

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
             R      R  I+    AGIP         +        +                    
Sbjct: 369  MRSVRVYARSLISALERAGIP--------FVVRGGRLFERP------------------E 402

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                +       E      +     +  L+   L     +  +  +        + + + 
Sbjct: 403  VVIVMQALAFLGEYPYPLRSPVPVHLPLLEEAYLALGYGEAADCALFLKLMTDLKREIDR 462

Query: 520  AVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            +    +  +   +   +             ++ + ++L               +  +   
Sbjct: 463  SESFSLQTLFHRVVQAMGGDRTPFPEVWYYNLGNLSQLVSAFEHQY-----PLITTMEIH 517

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
               + +     K  E G   +                            + +    +++ 
Sbjct: 518  RFLEYIQEHAMKQAEEGGAGEELLP----------------------DAVTVTTLHKAKG 555

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
            L F  + +  LN      +   +  +  V     +       +      F +        
Sbjct: 556  LQFPVVFIPRLN-TGEFPSDRPDRAVWFVPSPLFDRDRYTTSLEDERRLFYVGITRSEKY 614

Query: 699  YT----RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                  R    +  P   S +          D F    K G+                  
Sbjct: 615  LFLSGHRQRSGDLPPAEPSTFFSEYPRDHVVDRFPCPAKGGET----------------S 658

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                P           S+S ++   + P+    R +   D +P  +        G   H+
Sbjct: 659  HTATPISDRSPARIETSWSALRYYAHCPFDYKLRHLYGFDPMPREELG-----FGRAVHS 713

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            ++  +  + +          +  ++D H      P       + +  + +  ++  E+  
Sbjct: 714  VLAAVHTQIVRGTFD--PAEIPDLVDEHLLLRFAPAGTTERVQGIVARQTLRYV--EQNS 769

Query: 875  QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK-T--GDNPKKETAQK 931
                    + +P   A+ +    + G  D +     G V++ D+K T  G+   +   ++
Sbjct: 770  HDFARIAGIELPFSFAVGNG--VVNGAMDLMLGDGDGGVELRDFKLTEEGEASFRPDVER 827

Query: 932  LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
                QL + A A ++         +V              +                ++ 
Sbjct: 828  ----QLQVYALAARSLG------HEVHKATIYHFDTGSITEVAVG-------PAALAEAQ 870

Query: 992  KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
              +  ++  +QN E P     R +       ++  L 
Sbjct: 871  TAVERMIVGIQNQEFP----RRPAADRCANCDWHCLC 903


>gi|319427815|gb|ADV55889.1| DNA helicase II [Shewanella putrefaciens 200]
          Length = 722

 Score = 95.4 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 71/687 (10%), Positives = 164/687 (23%), Gaps = 117/687 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+     T +A  E+R    ++ G     +  I +   +           +  L      
Sbjct: 56  SILAVTFTNKAAAEMRERVEKVAGTNMGRM-WIGTFHGLAHRLLRTHFQDA-GLPQSFQI 113

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +    ++ RLI      L    K   P           +                 +  +
Sbjct: 114 LDSDDQV-RLIKRILKSLNLDEKQYPPRQAQGYINGKKD-----------------QGLR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + + A+               L    + + E              +             
Sbjct: 156 PKHIDAIGFP--------IEQNLLKIYQVYQESCDRAGLVDFAEILLRAHELWLNKPHLL 207

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A     A V+   D       W     ++ +
Sbjct: 208 AHYQERFKHILVDEFQDTNAIQYAWIRVLAG--QTANVMIVGDDDQSIYGWRGAQVENLH 265

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                               +  +              +     
Sbjct: 266 RFLQDFP--------------------------TATTIRLEQNYRSKGNILKASNALIAN 299

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398
           N + +  ++   +     ++L  A NE +EA  I   +    ++       A++      
Sbjct: 300 NPERMGKELWTDEADGDPISLYCAFNEMDEARFIVGRINDWHEKGGNLSDCAILYRSNAQ 359

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L   G+   I  G+              +  I   ND  A   +V  P    G
Sbjct: 360 SRVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKNDDAAFERVVNTPPRGIG 419

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                + R                    DL                          ++K 
Sbjct: 420 DRTLDILRTTAR--------------QQDLTLWQACL----------------RLLDEKV 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           LA      +   +  +VT + +              + +            +    +   
Sbjct: 450 LAGRAASAVRGFMDLIVTLQEDTQDMALYRMADTVIQASGLKAMYEAEKGEKAHARIENL 509

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           EE  T +  F    E     + NA      ++              +  + ++    ++ 
Sbjct: 510 EELVTAARTFEMPEELEDMGELNA-----FLSHAALEAGEGQADAFTDAVQLMTLHSAKG 564

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + + G+ EG++P              S + L+  ++   +    +         L
Sbjct: 565 LEFTMVFMAGVEEGIFP--------------SKMALEEGDRLDEERRLCYVGMTRAMEKL 610

Query: 698 IYTRSLRE----NNIPTIASRWLQRLL 720
             T +              SR+++ + 
Sbjct: 611 YITYAESRRIYGREDYARPSRFIKEIP 637


>gi|212710171|ref|ZP_03318299.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM
           30120]
 gi|212687170|gb|EEB46698.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM
           30120]
          Length = 723

 Score = 95.4 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 71/682 (10%), Positives = 158/682 (23%), Gaps = 111/682 (16%)

Query: 50  YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
              T +A  E+R    ++ G          I +   +         L + NL      + 
Sbjct: 63  VTFTNKAAAEMRHRINQLVGTSEGGMW---IGTFHGLAHRLLRQHYLDA-NLPQDFQILD 118

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
              +  RLI      +    K   P   +       +                 E  + +
Sbjct: 119 SDDQ-YRLIRRLLKAMNLDEKQWPPRQGMWYINGKKD-----------------EGLRPQ 160

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HL 222
            + +  N     W            + + E              +               
Sbjct: 161 HIESYGNPVEATWLK--------VYQAYQEACDRAGLVDFAELLLRAHELWLNKPHVLQH 212

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +     I++     +       +  +A      +++   D       W     ++    
Sbjct: 213 YRERFTNILVDEFQDTNSIQYAWIRVLAGDTGKVMIV--GDDDQSIYGWRGAQVENIQRF 270

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            ++                            G  +  +       +      +T    N+
Sbjct: 271 LNDFP--------------------------GAETIRLEQNYRSTNNILKSANTLIANNS 304

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLAR 400
           D L   +         ++L  A NE +EA  +   ++   +     +  A++      +R
Sbjct: 305 DRLGKNLWTEGGDGEPISLYCAFNELDEARYVVGRIKQWHENGGALQDCAILYRSNAQSR 364

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            ++  L +  +   I  G             S L  I   ND  +   +V  P    G  
Sbjct: 365 VMEEALIQGAMAYRIYGGQRFFERQEIKDALSYLRLIANRNDDASFERVVNTPTRGIGER 424

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                R                               T ++              ++ L 
Sbjct: 425 TLDTVR------------------------------QTARDQQLTLWESCEYLLREQVLG 454

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
                 I + +  +            ++        +            +    +   EE
Sbjct: 455 GRAASSIERFLELIEALAKETQEMPLHVQADRVINDSGLRAMYEQEKGEKAQARIENLEE 514

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
               +  FS   E    +   A      +        V         + ++    ++ L 
Sbjct: 515 LVNATRDFSYQDEDQDLMPLQAFLSHAALESGEGQADVNQ-----DAVQLMTLHSAKGLE 569

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
           F  + + G+ E           F S++   +      E+ +        M   T     +
Sbjct: 570 FPVVFIVGMEE---------GMFPSQMSMDESGRLEEERRLAYVGITRAMVKLTITYAES 620

Query: 701 RSLRENNIPTIASRWLQRLLVL 722
           R L    +    SR++  L   
Sbjct: 621 RRLYGKEVYHRPSRFIGELPTE 642


>gi|121998061|ref|YP_001002848.1| exodeoxyribonuclease V subunit gamma [Halorhodospira halophila SL1]
 gi|121589466|gb|ABM62046.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Halorhodospira
           halophila SL1]
          Length = 1164

 Score = 95.4 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 94/868 (10%), Positives = 206/868 (23%), Gaps = 74/868 (8%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG---KKSTILPIIKSLG 82
           L    VE  +  PL P  L      V +    Q LR               I   +    
Sbjct: 22  LRQVAVEWVQRHPLAP--LEDEVFLVQSNGMAQWLRLALARHPDSEQGGCGIAAAVSMQL 79

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                      +L     P  S   +   L RL  +    L D          L+     
Sbjct: 80  PARFLWSVYRAVLGPEGAPRESPFGKDPLLWRLARLLPA-LRDHPGFEPLRGFLADDPDG 138

Query: 143 ANAIWLAKNLADIIDIIETEEKKW------------EDLHALKNEKYGMWWLLAADFLKI 190
                LA  +AD+ D  +     W            +     ++      W  +    + 
Sbjct: 139 RKRYQLAARIADLFDQYQVYRADWLADWSRGEDVCRDARGQARDLDDTQRWQASL--WRA 196

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
                 E   E   ++        + +  +         +I+ G +     T   +  ++
Sbjct: 197 VCAELAEVADEAGQATVHQLYRERIASL-DTAPADLPRRVIVFGISSLPRQTLEALQELS 255

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTIT--------EKSTNITSSNTTYSTHPQYSLAKLLDF 302
                 + +          I                               ++   L  +
Sbjct: 256 RFAQVLVFVHNPCAFYWADIIADKDLLRADPGRRPRKAGMPEVLHPEELHNHAHPLLAAW 315

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKS-----------------FLPPDTSDMRNTDIL 345
               R+ +  L    +        ++++                  L  D   +R     
Sbjct: 316 GKQGRDYIGLLDAHEDPQAHPHQALAQAGERIDLFRGPATGSLLGQLQDDILHLRPLAET 375

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARR 401
               P + +  + +    A + + E   +   L  +  E      +   ++  D +    
Sbjct: 376 REAWPAVGREDASLQFHLAHSAQREVEVLHDRLLAAFSEDSSLRPRDVIVMVPDIDAYAP 435

Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +           I   ++             L  LL+          +  L++ P 
Sbjct: 436 HIEAVFGRFDAGDARHIPYTVADQGERGLDPLLIALEQLLSLPESRCGLSDLLDLLEAPA 495

Query: 455 AKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHV 505
            +  F   E  L+      E   +R   N      L       ++     +        V
Sbjct: 496 LRRRFGITEADLATLHGWAEEAGVRWGLNREQRAGLQLPEGLEQNTWRFGLRRMLLGYAV 555

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
              ++    E       L   ++  +  LV             +  +     +  L    
Sbjct: 556 GAGEAWSGVEPYPQVGGLDAALVGRLERLVGALEGTWGELREEATPERWGERLQRLLGTY 615

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
            D   ++ +L  E     L                      +   + ++   +  +    
Sbjct: 616 FDPSGEVESLTLERLRDALEKWQRDCETGAFAEPLPLNVVREHWLQALEDTRLSQRFLVG 675

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
           + +     +  R + F  + L G+N+G +P++     F           ++  +      
Sbjct: 676 A-VNFCTLMPMRAIPFRHVCLLGMNDGDYPRSPTPLDFDLMADDYRPGDRSRREDDRYL- 733

Query: 686 HDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLL-VLGGTDFFDNLKKRGQCYLDWT 742
               + +    L  +   R   +N P   S  + +L   L       + ++ G      T
Sbjct: 734 FLEALLSARDRLYISWIGRSVRDNEPRPPSVLVGQLRDHLAAGWRLADEEEAGGLLEALT 793

Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
            +           R +P        R +  +           V     L    +      
Sbjct: 794 VEHPLQPFSRQNFRTEPSARHYTYAREWWAAHQGDEAGSGPRVT---TLPERPVEDPPAP 850

Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPE 830
                 G L    +     +R+     +
Sbjct: 851 ITPETLGALLKQPVQTFFNRRLGVRFED 878


>gi|76798891|ref|ZP_00781098.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21]
 gi|76585760|gb|EAO62311.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21]
          Length = 644

 Score = 95.4 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 86/697 (12%), Positives = 206/697 (29%), Gaps = 126/697 (18%)

Query: 46  SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLL-----LSYNL 99
           ++     T +A +E+R          + T+   I +   +       +        ++ +
Sbjct: 54  NILAITFTNKAAREMRERAIALNPATQDTL---IATFHSMCVRILRREADYIGYNRNFTI 110

Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
              V   ++   + R+I                ++      S    I  AKN  D++D I
Sbjct: 111 ---VDPGEQRTLMKRIIKQLN-----------LDTKKWNERSILGTISNAKN--DLLDEI 154

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             E++  +    +               +    K + E L    A       +  +R   
Sbjct: 155 AYEKQAGDMYTQV---------------IAKCYKAYQEELRRSEAMDFDDLIMMTLRLFD 199

Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           ++       +     I +     +  A  +L+  +A+      V+   D       W   
Sbjct: 200 QNKDVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGA 257

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             ++            +PQ  +  L +     ++ ++   NV N    R           
Sbjct: 258 DMQNILDFEK-----DYPQAKVVLLEENYRSTKKILQAANNVINHNKNRRPK-------- 304

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSAL 391
                        K+         +    A+NE+EEA+ +A  +   + E     K  A+
Sbjct: 305 -------------KLWTQNDEGEQIVYHRANNEQEEAVFVASTIDNIVREQGKNFKDFAV 351

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +      +R ++  L +  I   +  G    +      + + LN +   +D ++   +V 
Sbjct: 352 LYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLNILANTSDNISFERIVN 411

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P                       +       +  ++S   ++  +  + +      + 
Sbjct: 412 EP-----------------------KRGVGPGTLEKIRSFAYEQNMSLLDAS-----SNV 443

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
           +    K  A   V  +   I  L +   +   T    ++ D T           L     
Sbjct: 444 MMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQNTL---ES 500

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              +   EE  +++  F    E     +         +  L           +++ + ++
Sbjct: 501 QARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAEVTLM 560

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + L G+ EGV+P + A              ++ A++   +    +   
Sbjct: 561 TLHAAKGLEFPVVFLIGMEEGVFPLSRA--------------IEDADELEEERRLAYVGI 606

Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723
                +++     TR+L         +R+++ +    
Sbjct: 607 TRAEQILFLTNVNTRALFGKTSYNRPTRFIREIDDEL 643


>gi|257451429|ref|ZP_05616728.1| hypothetical protein F3_00085 [Fusobacterium sp. 3_1_5R]
 gi|317058009|ref|ZP_07922494.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313683685|gb|EFS20520.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 876

 Score = 95.4 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 135/433 (31%), Gaps = 60/433 (13%)

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
            L    +L          I   L++   PK T    FL+ V +  L+ +T E+ I    + 
Sbjct: 473  LRDWHSLMYERKKEKQAIFLDLDDKSLPKLTKTISFLTEVQKQQLDCQTREESILVEKYR 532

Query: 688  FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG----------TDFFDNLKKRGQC 737
            F  A  ++  +     +        S +++  L   G            F  +L++    
Sbjct: 533  FYQAVYSQKRVVFLVQKSEEKNKTLSSFVEEFLWKQGKKIEKSPYSKAFFLQSLRESFSS 592

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI- 796
             + WT++ +        K  +    L+    +    + + L       Y  +IL      
Sbjct: 593  EVSWTKEFEEGKALALKKENE--ELLKDGKLSLGAYDWRDLKTCSKYFYFHKILGNSGRI 650

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKK-----RINKNTPEINHLMKQIIDSHFEKENL--P 849
                        G + H  +  + ++        +     +  + Q ++  F+K++L  P
Sbjct: 651  EELSFGLSPRLLGIVCHRFLERIGREQWKIFLQERQFAISDTTLAQYLEEEFKKDSLKIP 710

Query: 850  PHIDIIWR----HLFHKISHSFLEHEEK--IQSSIEKI----FVNIPAKMAIESIGIHLT 899
            P +    R        K + +F ++ EK     +I +      +        + + +   
Sbjct: 711  PFLKQYLRKIVYPRIIKNTRNFFQNLEKKYRLENISRFQGEKGIEKEGIYRGKELNVSFQ 770

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
            G AD +   + G  +I DYKTG           I+ QL   A       F      +   
Sbjct: 771  GRADLVIEAEQGK-EIIDYKTGKT---------IEDQLDFYA-------FLFYGEEQKVE 813

Query: 960  LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
              Y  L   +        KK+       E+  KN  E      + ++ F           
Sbjct: 814  GRYYNL---WDGMFSQGKKKEELNSACLEEFFKNFEEDSFYHISEKKAF----------C 860

Query: 1020 IQSEYDHLARVAE 1032
                Y  + R  E
Sbjct: 861  TYCPYQKICRREE 873


>gi|325473361|gb|EGC76556.1| ATP-dependent DNA helicase PcrA [Treponema denticola F0402]
          Length = 674

 Score = 95.4 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 79/716 (11%), Positives = 186/716 (25%), Gaps = 122/716 (17%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E++    E+TGKK   L  + +      +   + +           
Sbjct: 52  SQILALTFTNKAAKEMQERIKELTGKKLQNL-TVSTFHAFGVKVLRSHIDKIG------- 103

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                         WR+                L       +  +   AD +D+ +    
Sbjct: 104 --------------WRS----NFSIYDETDRNQLIKECGRELKFS---ADALDVYKV-GI 141

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
            + ++           W    D  K   K + E L   NA       +  ++   EH   
Sbjct: 142 LFSNIKM-----GRKDWTNEHDSYKALYKEYQEGLKLYNAVDFDDLIMLPIKIFKEHPEV 196

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +       M  +A+      +    D       W   + ++ 
Sbjct: 197 LAEYRERYRYIMVDEFQDTSTQQYNFMKLIADKN----ICVVGDDDQSIYSWRGASFENI 252

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +               + ++IK E   R       +   + VIS +      +  
Sbjct: 253 RNFEKDFP-------------EMIEIKLEQNYRSTGT--ILAAANGVISHNVNRKVKALW 297

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396
              D               + +   +NE  EA  I+  +               ++    
Sbjct: 298 SEKDSGRP-----------IEIFIPENEAAEADFISDMILSLKQREGFKYSDFGVLIRAN 346

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
           +L+R ++       I   +S G           L S L  +   +D + +  ++  P   
Sbjct: 347 SLSRPLEESFLEVNIPYRMSGGTSFFQRKEIKDLISYLRVVANPDDDVNLLRIINTPRRG 406

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G        A       ++R                     +    + P      S ED
Sbjct: 407 IGKKTLETLSALATENSCSMRTAI------------------RLLLENPPEDMRGKSIED 448

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            +    L+      +               +++ +++        +     +   +    
Sbjct: 449 LKEFAELISAHRTQLLSGKGLAQKVRKLLDDIAYNEYLIAEYQKSEKAAQFKMMNI---- 504

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                ++                A+  ++++ IT L   +T     E+   + I+    S
Sbjct: 505 -----ESFLHSMDDWENNPDNWDASLYDYLNRITLLTRDDT----EEEKGEVNIMTIHSS 555

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + + G  +G+ P   +                       +    +      + 
Sbjct: 556 KGLEFPVVFIAGAEDGLIPHARSVEENDG-------------DIEEERRLFYVAITRAQQ 602

Query: 697 LIYTRSLRENNI-----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
            ++  S R+            S +L  +          + +   +   D   ++  
Sbjct: 603 KLFITSCRQRRKQGGITECAPSPFLDEIPADLVEYHEPDAQAEEERIADIFSQMKK 658


>gi|289640615|ref|ZP_06472787.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
 gi|289509504|gb|EFD30431.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
          Length = 1229

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 94/931 (10%), Positives = 236/931 (25%), Gaps = 190/931 (20%)

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTV 249
             +   + L  ++    V   + L  +  E   L +     +++     +  A  R+++ +
Sbjct: 345  YRAAKQELEVIDFGDLVTLAVRLADSVPEVGALERARARVVLLDEYQDTSVAQRRMLAGL 404

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 G  V    D       W   +  + +   ++          + +L          
Sbjct: 405  FG--GGHPVTAVGDPCQAIYGWRGASVANLDGFPAHFRRCDGEPARVYELTVNQRSGGRL 462

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            +     V+  +  R  V      P           L                        
Sbjct: 463  LSLANTVAATLRARHRVARLRPRPDVAEHGTTVVALHP------------------TWAG 504

Query: 370  EAISIAIALRM---SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
            E   +A  LR    +      + A++   R+    +   L   G+ +++     L +   
Sbjct: 505  EVRWVAATLREIVDAGRARPGECAVLVRARSDVPALYAALLAAGLPVEVVGLGGLLSLPE 564

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN------- 479
             + + + L  +       A+  L+  P  + G  +           +             
Sbjct: 565  VADVIATLEVLDDPTANAALVRLLTGPRVRLGRRDLAALGRAARAAVRVGTDRAAVLDQP 624

Query: 480  -------------------------------------------KNSYDIMDLKSLVLDRI 496
                                                       +       L SL     
Sbjct: 625  APGPQASRQPQSSAGHAGHAGHDGGAGYGDGAGHGGHGGHDGARPPGPADPLSSLDPLDE 684

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
            A    +       + + ++  +         L+ +   + +            I    ++
Sbjct: 685  AVTGIDPCDVVALADVLDDPGDEVSPAGRARLRILAGELRHLRAHVDEPLLDVIHRVVEV 744

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            T   ++     E               + + F  +   GS    + + ++        G 
Sbjct: 745  TGLDVELAASPEAVTAHRRDNIAAFVDVVANFEGLDNDGSV--HSFLAFLRAAREHERGL 802

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF------LSRVMQS 670
                    +  + ++   +S+ L ++ + +  L+  V+P  T ++ +      L   ++ 
Sbjct: 803  D-ATSPSGADAVQLMTVHKSKGLEWEVVAVPNLSRKVFPVTTVRSKWTTVASVLPTPLRG 861

Query: 671  DLNLKTAEK------------------YIGQAAHDFEMANGTRHLIY---TRSLRENNIP 709
            D +   A +                     +    +      + L+             P
Sbjct: 862  DADDLPALRGHDKAALADFTAECDAYLEREERRLGYVAFTRAKSLLLGSGHWWGSSQRRP 921

Query: 710  TIASRWLQRLLVLGGT-----DFFDNLKKRGQ--CYLDWTRKLDYTTKQPH--------- 753
               S +L  L             +      G+    L     LD+               
Sbjct: 922  RGPSAFLDELHDHARAGGGRVALWAPPPSEGETNPQLAGMDDLDWPLPYEPVAFARRQAV 981

Query: 754  --------YKRPKPFPPLEAQPRTYSFSEIKQL-----------------------INDP 782
                           P  +      + +E + L                       +  P
Sbjct: 982  AREVSGYLAALTASRPLPDDDHERMTPAERQMLTELDADVELLLAEARRARRVVREVELP 1041

Query: 783  YAVYARRILKLDF----------IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
             A+ A ++++L             P  ++   +  RGT FH+ +  + ++    +  ++ 
Sbjct: 1042 RALTASQVVRLRADPAGLARDLARPMPRQPVPQARRGTAFHSWVEGMFEQTPLIDLDDLP 1101

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                + +D     +                +  +FL      +S      V  P ++ I 
Sbjct: 1102 GAADEGVDDADAADAA-------------VLREAFLASPYGQRSPF---AVEAPFELLIG 1145

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
               +   G  D +  L  G  ++ D+KTG        ++    QL++   A        +
Sbjct: 1146 GRAV--RGRIDAVYDLGDGRWEVVDWKTGR-------RQADAVQLAVYRLAWARLRGVAL 1196

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
            D     +  ++ ++    +      + +  A
Sbjct: 1197 DAV---DAAFLYVRSGEVVRPKLLSEPELEA 1224


>gi|210623664|ref|ZP_03293973.1| hypothetical protein CLOHIR_01923 [Clostridium hiranonis DSM 13275]
 gi|210153429|gb|EEA84435.1| hypothetical protein CLOHIR_01923 [Clostridium hiranonis DSM 13275]
          Length = 1158

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 70/243 (28%), Gaps = 33/243 (13%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN- 827
            T S S +++  + P+A +      +      +      D G+  H +I    K       
Sbjct: 783  TISVSRLEKYASCPFAYFIEY--GMKAKDRKEYLFTAPDVGSFVHKVIENYSKTMHKDGI 840

Query: 828  ----------TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH---SFLEHEEKI 874
                         ++ ++ ++I                  H    +       +  + K 
Sbjct: 841  TWHEVDDKYIELRVSEMVDELIAKIPGFILESSPKYKYLAHRLKVLITVSIKIIADQIK- 899

Query: 875  QSSIEKIFVNIPA-------KMAIESIG---IHLTGFADRIDLLKSGF----VDITDYKT 920
            Q   E     +          + +E      + L G  DRID   +      V I DYK 
Sbjct: 900  QGRFEPDDYEVEFGKKRKYPSIQVEYKENEIVELIGKIDRIDKYINEENKEFVRIVDYKW 959

Query: 921  GDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
            G N          +  QL +   A L+ G        K A + Y R+           D 
Sbjct: 960  GKNDINLNDVYYGLQLQLLVYMDAILEGGEIPDNIPIKPAAMLYSRMDNPIISRSTLVDD 1019

Query: 979  KKY 981
            ++ 
Sbjct: 1020 EEV 1022


>gi|171464032|ref|YP_001798145.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193570|gb|ACB44531.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 788

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 68/715 (9%), Positives = 177/715 (24%), Gaps = 123/715 (17%)

Query: 47  VTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           V     T +A +E+      +     +      I +   +      A    +      + 
Sbjct: 63  VLAVTFTNKAAKEMMLRLSAMLPINTRGMW---IGTFHGLCNRLLRAHHKEAG-----LP 114

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +  ++L+    +   +  L  +  D                   AK L   I   +   +
Sbjct: 115 STFQILDTQDQLSAIKRLLKGLKVDDEKYP--------------AKQLQYFIAHAKERGQ 160

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
           + +DL        G  +      L      + E+             +            
Sbjct: 161 RAKDLS------VGDDFQAKMAQL---YAAYDEQCQREGVVDFAELLLRSYELLKHSEAI 211

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI---------VLPGLDCHIPTAI 270
               +     I+I     +       +  ++ H   +I         V    D       
Sbjct: 212 RTHYQERFRHILIDEFQDTNALQYAWLKLLSGHDASSINVSGMGSSSVFAVGDDDQSIYA 271

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
           +     ++  +                 L+  L+        + + +N +   +      
Sbjct: 272 FRGADVENMRLYEK----------QYHPLMVKLEQNYRSHGHILDTANHLIANN------ 315

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKK 388
                      ++ L   +         V + EA ++  EA  +   ++  ++    + +
Sbjct: 316 -----------SERLGKNLRTDADHGEPVRIYEAPSDHAEAAWLVDEIKALVNSGIKRTE 364

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            AL+      +R ++  L   GI   +  G+            +    +   ND  + + 
Sbjct: 365 VALLYRSNAQSRIIEHALFSAGIPYRVYGGLRFFERAEIKHALAYSRLLENPNDDTSFSR 424

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
           +V  P    G     + +     +                    L   A+          
Sbjct: 425 VVNFPTRGIGARSIEVLQDAARAQQC-----------------SLYLAASTLEGKAGAAL 467

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
              +   D        + + + +  ++ +              D  +     +       
Sbjct: 468 GGFVRLVDHMREATRHNTLPETVEFVIQHSGLIQHYLSEREGQDRVENLQELINAATAFI 527

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
             +         G+  ++            + +       ++                 +
Sbjct: 528 AEEGY-------GQDAAAAMLSGENAPGVAEVSP--LAAFLSHASLEAGDNQAQAGQDAV 578

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            ++    ++ L F ++ + GL EG++P   + N            L        +    +
Sbjct: 579 QLMTVHSAKGLEFTSVFITGLEEGLFPHENSVN--------EQNGL------EEERRLMY 624

Query: 689 EMANGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                 +  +Y     +R L       + SR+L+ L        +   K R   +
Sbjct: 625 VAITRAKERLYLSHTQSRMLHGQVRYNMPSRFLEELPSDSLK--WLTPKARDARW 677


>gi|302527193|ref|ZP_07279535.1| RecB family exonuclease [Streptomyces sp. AA4]
 gi|302436088|gb|EFL07904.1| RecB family exonuclease [Streptomyces sp. AA4]
          Length = 296

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 79/258 (30%), Gaps = 25/258 (9%)

Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                  P        +    S S        P     R + +L  +P          RG
Sbjct: 3   DTATVTTPPGADAPARRRPALSPSRASDFKQCPLLYRFRAVDRLPEVPTR-----AQLRG 57

Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP---------PHIDIIWRHLF 860
           TL H ++  L      +        +     +    E+           P     W    
Sbjct: 58  TLVHAVLERLFALPAAERVAPRAKELLAPTWTELSAESPEWTELFADGEPGETDKWLASA 117

Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
            K+  S+ E E+  +  +E     +  ++ +   G+ L G+ DR+D+  +G + + DYKT
Sbjct: 118 EKLLDSYFELEDPRR--LEPEACELHVEIEL-GSGVLLRGYIDRVDVAPTGEIRVVDYKT 174

Query: 921 GDNPKKETAQKLIDP-QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
           G  P      +     Q+   A  L       +       L  + L     +    ++ +
Sbjct: 175 GAAP--REIGEAKALFQMKFYALVLWR-----LRGVVPRQLKLMYLTDGQSLAYTPDEAE 227

Query: 980 KYSADELSEKSLKNLIEI 997
               +   E   + +++ 
Sbjct: 228 LVRFERTLEAIWQAILKA 245


>gi|171743075|ref|ZP_02918882.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC
           27678]
 gi|283455915|ref|YP_003360479.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
 gi|171278689|gb|EDT46350.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC
           27678]
 gi|283102549|gb|ADB09655.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
          Length = 885

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 77/690 (11%), Positives = 174/690 (25%), Gaps = 75/690 (10%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A  E+R     I G ++  +  I +           D      L    S
Sbjct: 71  SQILAITFTNKAAAEMRERLAAIVGPEAERM-WISTFHSACVRILRRDG-DQIGLKSGFS 128

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            I    +  RLI +    L   +K   P   L              +L    D ++T   
Sbjct: 129 -IYDTADSERLIKLIGADLNIDLKRYTPRMILGKISDYK------NSLISWKDQLKTYAA 181

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----A 219
            +      +       +    +   +    +  RL + NA       +  +        A
Sbjct: 182 DY---RPGQRGYQLGRFDNVEELFAVVYSEYQYRLAQANAVDFDDLIMRTVELLRTCPQA 238

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I +     +  A   L+  ++          G+D         T   +  
Sbjct: 239 SDYYRHKFRYIFVDEYQDTNHAQYVLVRELS----------GIDSGEQADPHATGAGRVG 288

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
               +    S    Y+            E+                  +           
Sbjct: 289 PSWVTVVGDSDQSIYAFRGADIRNIQDFEEDFPNAKTIMLEQNYRSTQTILDAANAVIAK 348

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396
                 +     + K    +    ADN ++EA  IA  +     E        A++    
Sbjct: 349 NENRKPKKLWTALGKGDP-IIGYAADNAQQEAGYIASEITRLHTEEGIAYSDMAIMYRAN 407

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  +    +   +  G             + L AI    D + +  ++  P   
Sbjct: 408 AQSRSLEEAMINANLPYQLVGGTKFYERREVKDAIAYLQAIVNPADDVNMRRILNVP--- 464

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                   +RA+  + + A R     +D ++                        ++   
Sbjct: 465 ---KRGLGARAEGLVAMYADRHGTTFFDGIEH-----------------LDQIEGMTGRT 504

Query: 517 KELAVLLVDHILQCITPLVTY-KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            +      D + + +     +           LS S   +                L  L
Sbjct: 505 AKPLGAFRDLMHELVDFAKAHDAKPSEVVAEVLSRSGLLEELQRSEDPQDASRVDNLSQL 564

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                    ++             A    +++    + D + +  + E S  + ++    
Sbjct: 565 QSVAAEFEQNTP-----------DATLAGFLETTALVADSDQLPGENEDSGKVTMMTLHT 613

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L +  + L G+ +G +P + A         +  L      +   +            
Sbjct: 614 AKGLEYPVVFLTGMEQGTFPHSRAMEDTSELSEERRLAYVGITRAKRRLYVTRAA----- 668

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
                R+        + S++L  +      
Sbjct: 669 ----VRAQWGQANEMMPSQFLDEIPEDLID 694


>gi|297184355|gb|ADI20471.1| superfamily I DNA and RNA helicases [uncultured alpha
           proteobacterium EB080_L58F04]
          Length = 781

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 79/691 (11%), Positives = 185/691 (26%), Gaps = 122/691 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E++S   E+  +    +P + +   +                  V  
Sbjct: 77  EILSVTFTNKAAREMKSRVAELLRQSVEGMPWMGTFHSIC-----------------VKL 119

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +  L +     +  W A+ LA IID  +     
Sbjct: 120 LRRHAELVGLKSSFTILDTDDQIRLLKQ--LLVASDVDDKRWPARQLAGIIDQWKNRAWG 177

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            E++ A +   +      A +F       + ERL  LNA       + +++         
Sbjct: 178 PENVPAAEAGAFNH---RATEF----YAAYQERLKALNAVDFGDLLLHVVKIFQTQPDVL 230

Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
            +       I++     +  A    +  +A        +   D       W      +  
Sbjct: 231 QQYQQWFKYILVDEYQDTNVAQYLWLRLLAGGHKNICCV--GDDDQSIYGWRGAEVGNIL 288

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +            +L          +     V +   GR                 
Sbjct: 289 KFEKDFAG-----AKTVRLEQNYRSTPHILAAASAVISGNTGR----------------- 326

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------RMSLDENKKKSALIT 393
               L  ++         + LI   +  EEA  I   +       R     +  + A++ 
Sbjct: 327 ----LGKELWTDLDEGEKLRLIGHWDAEEEARWIGDEIEALQQGSRGLDKFSPDQMAILV 382

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              +  R  +      G+   +  G      +      +    +   +D +A   +V  P
Sbjct: 383 RASHQMRAFEDRFLTIGLPYRVIGGPRFYERMEVRDAMAYFRLVCSPSDDLAFERIVNTP 442

Query: 454 -LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
                   ++ +        +    G +   +   L       +    +         + 
Sbjct: 443 KRGLGDKAQQKIQSMARQEGIALTEGARLLLEAKGLSGKGALELGRLVDGLGRWRKTMQD 502

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
                +    ++             KT +         +   +     ++ +   E    
Sbjct: 503 QSISHQELAEVILDESGYTEMWQNDKTPE--------AAGRLENLKELVKALDQFE---- 550

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
                                       N   +++ ++ ++D E    + E    + I+ 
Sbjct: 551 ----------------------------NLQGFLEHVSLVMDNE----RDEAGEKVSIMT 578

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L F  + L G  +G++P   + +         +   +  E+    A      A 
Sbjct: 579 LHAAKGLEFPAVFLPGWEDGLFPSQRSMD---------ETGQRGLEEERRLAYVGITRAE 629

Query: 693 GTRHLIYTRSLRENN--IPTIASRWLQRLLV 721
               + +  + R       ++ SR++  L  
Sbjct: 630 RLCTICFAGNRRIFGQWQSSMPSRFIDELPA 660


>gi|227832630|ref|YP_002834337.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453646|gb|ACP32399.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 852

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 85/724 (11%), Positives = 191/724 (26%), Gaps = 85/724 (11%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +    R   + P     +     T +A  E++    ++ G  +  +  + +  
Sbjct: 84  TAVLTRRIAYLMRERGVAPW---QILAITFTNKAAAEMKERVGQLVGPVAERM-WVSTFH 139

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            +       +  L       V  +     +            D  + L       + +  
Sbjct: 140 SICVRILRNNAQL-------VPGLNTNFTIYD---------GDDARRLLTMIAKDMQLDL 183

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI----ASKYWTER 198
                 A+ LA+ I   + E    E        +         +  +I      + +  R
Sbjct: 184 KKYS--ARVLANQISNRKNELISPE--------QARAEAERTKNPFEITVASVYEEYQRR 233

Query: 199 LVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANH- 252
           L   N+         ++R   +H       +     ++I     +  A   L+S +    
Sbjct: 234 LRAANSVDFDDLIGEVVRIFNQHPQVVEFYRRRFKHVLIDEYQDTNHAQYALVSALVGRG 293

Query: 253 ---PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
              P+   +    D       +   T ++            +PQ     L       +  
Sbjct: 294 ELPPDAPELCVVGDSDQSIYAFRGATIRNIQEFE-----RDYPQAHTILLEQNYRSTQTI 348

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
           +     V  +  GR                      E  +         +    ADNE +
Sbjct: 349 LNAANAVIAKNEGRR---------------------EKNLWTAHGQGEQIVGYVADNEHD 387

Query: 370 EAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
           EA  IA  +    D        A++    N +R ++    R GI   +  G         
Sbjct: 388 EARYIASEIDSLADKGTAYSDIAVMYRTNNASRALEDIFVRSGIPYKVVGGTRFYERREI 447

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             L + L  +   +D +++  ++  P    G   +           V+            
Sbjct: 448 RDLVAYLRIMDNPDDTVSLRRIINVPKRAIGDKAQAQIALHAENLGVSFGAALRDAAAGK 507

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
           +  L    +        +                   D + + +  L+     +     +
Sbjct: 508 VAGLGTRAVNAVSKFNEMMEGVRAQIPGMVNEVTGQPD-LGELLNALLDATGYRAELENS 566

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
               D  +L    L  +             E       +  +  +  G     +   +++
Sbjct: 567 NDPQDGARL--DNLNELVSVAREFSSEAANEMAFLGADAEEAPELSEGEAAPGSLQAFLE 624

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            ++ + D + +     +S  + ++    ++ L F  + L G  +G +P   +        
Sbjct: 625 KVSLVADADQIPDH--ESGVVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMRSLGDPKELS 682

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
            +  L      +   Q                 RS   N +   ASR+L  +        
Sbjct: 683 EERRLAYVGITRAREQLY-----LTRA----ILRSSWGNPVTNPASRFLAEVPEDLIDWR 733

Query: 728 FDNL 731
            +  
Sbjct: 734 REEP 737


>gi|187477416|ref|YP_785440.1| nuclease/helicase [Bordetella avium 197N]
 gi|115422002|emb|CAJ48524.1| putative nuclease/helicase [Bordetella avium 197N]
          Length = 1107

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 87/770 (11%), Positives = 196/770 (25%), Gaps = 80/770 (10%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239
            L +A     +   E      +       RA  +             +   +++     + 
Sbjct: 354  LALAVGQLQKVFAEAGEVDFIEIAQRAQRALGDADDPGELLLKLDASIRHLLVDEFQDTS 413

Query: 240  PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
                 L++++       +G  +    D       +           +         +Y  
Sbjct: 414  QTQIDLLTSLTSGWQPGDGRTLFLVGDPMQSIYRFRKAEVGLFLQAAERGIGELRLEY-- 471

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
             +L D    +   V+ +     ++       +   +    S   +  +    +       
Sbjct: 472  LQLTDNFRSQGGVVEWVNRSFADLLPAENDAAAGAIRYSASAAFHPVLPGEAVRFHAAWA 531

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
            +D          + A+++A         +    A++   R     +   L + GI     
Sbjct: 532  TDGPASGDAAAEDIAVALARQALAEHRGSAHPVAILVRARAHLGSLSRRLAQEGIPSRAV 591

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
              +PL      + L  LL A+    D MA  ++++ P                       
Sbjct: 592  ELVPLRLRPVVADLVQLLRALSHPADRMAWLSVLRAPWCGLTLESLQRL----------- 640

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                                     +   P  +        +   +L +   + ++ +  
Sbjct: 641  ----------------------FGADHQAPVPELLRLALAPDAPAILAEDEHRRLSRVAA 678

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
               ++ +  G L ++ W +     L             +    + ++L  L  ++   G 
Sbjct: 679  LLLDRGNDSGALPLAAWLQRVWQAL-----GGAALYAGVGAASDAESLFQLVERLAPHGG 733

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
               A     +  +              +   + I+   +S+ L FD++IL GL+      
Sbjct: 734  LDIAVLDTAVARLFAA------PDVEGEQGAVEIMTMHKSKGLQFDSVILYGLHRVPRGD 787

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                  F + + +  +     +      A       G R         +  +   A+R  
Sbjct: 788  QAPLVRFENNLGRVLMG--PIKARADAEADPLSRYLGAREARRAAYETDRLLYVAATRAR 845

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKL------DYTTKQPHYKRPKPFPPLEAQPRTY 770
            +RL ++G   F      R         +L          +    +     P  + +P   
Sbjct: 846  KRLHLIGNLVFDAEKGLRAPAASSLLGRLWNHVQAGEAPEAAPAQAQASGPFWQGEPLRR 905

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR---TDRGTLFHNIITELIKKRINKN 827
                   L+       A     L    H     +       GTL H  +  + ++     
Sbjct: 906  LDDATVALLAARPGWPAAAAGFLADAEHPAWQLEAGYEAAIGTLAHAWLARIGEEGGQYW 965

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
                    +  +     +  +P            +   + L            +     A
Sbjct: 966  DAARLSEHRPAMRRQLTRAGIPDSQADDAADAVLQTLQATL-----SDGPGIWLLSQSRA 1020

Query: 888  KMAIESIGIHLTGFADRIDL---LKSGFVDITDYKTGDNPKKETAQKLID 934
            +     I     G    IDL    + G   I DYKTG         +   
Sbjct: 1021 RREWPLIDAT--GRVSVIDLALSTEDG-WLIVDYKTGQAQPG-EGAEHFA 1066


>gi|224369744|ref|YP_002603908.1| RecC [Desulfobacterium autotrophicum HRM2]
 gi|223692461|gb|ACN15744.1| RecC [Desulfobacterium autotrophicum HRM2]
          Length = 1206

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 86/750 (11%), Positives = 182/750 (24%), Gaps = 66/750 (8%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
            V +K   Q L+       G    I   I++             +L  +  P  S   R 
Sbjct: 49  IVQSKGMAQWLKLAVAADDGCG--ISAGIETQLPGTWVWTAYRAILGNDTIPTDSPYDRE 106

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
             + R   I    L D I        L           LA  LAD+ D  +     W   
Sbjct: 107 RLVWRFFSILPTLLTDDIFSPLNRF-LENDTDQRRQYQLACRLADLFDQYQVYRADWLKQ 165

Query: 170 HALKNEKYG---MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
            A + ++       W+         ++ W      + AS     +  L +A  +      
Sbjct: 166 WAGEKDQLLTGGGQWVDIPPQHAWQAELWRRLRARVPASLRNIGRSDLHQAFLQKASDTR 225

Query: 227 KGP------IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI--------WN 272
             P      +I+ G +         +  V++     + +     H    I         +
Sbjct: 226 VRPEILPPRVIVFGISSLPKQVLETLYAVSHLCQVLLFVNNPCRHFWADIIEDRELLRID 285

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---- 328
                      +        +++   L  +    R+ +  +         R         
Sbjct: 286 HARHSGKATMPTPLDPVDVYRHANPLLAAWGKQGRDYIGLVYGYDTPETYRKNFAEIDLF 345

Query: 329 ------------KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                          +     D+  +         I +    +    A + + E   +  
Sbjct: 346 RDVIAQDTRGTLLHEIQQAILDLEPSAPDNESRRPIARGDRTITFQVAHSRQREVEILQD 405

Query: 377 ALRMSLDE----NKKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTL 425
            L  S +       +   ++T D          +           I   I+      +  
Sbjct: 406 QLLHSFETLDNLLPRDVVVMTPDIEGYAPHIEAVFGNLSLDDPRFIPFTIADHPGKKSVP 465

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAKNALELVALRGNKN 481
               L  LL+          +  L++ P       F   +            ++   NK+
Sbjct: 466 LVKALERLLHLPDLRMAARDLMDLLEVPAFQRRFGFKETDLPRLFQWIKGAGISWGLNKS 525

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQ-----SRLSEEDKELAVLLVDHILQCITPLVT 536
                 L   +         N  +  +      +  + E  +    L  H++  +  +V 
Sbjct: 526 QRASFGLPPDLDQTTWAFGLNRMLLGYAVGNNKAWHNIEPYDEIGGLEAHLVGLVAGVVE 585

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE---EEGKTLSSLFSKIIE 593
                 +    L  S   +     L+ +  D    +            + L    +   +
Sbjct: 586 RL---EALWTTLQSSACPERWCLILRTLARDFFEPVDASERLVLNRMDQVLDDWLNACTQ 642

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                +       D     +  + V  K      +     +  R + F  + L G+N+G 
Sbjct: 643 ADLDQELTLCVVRDYFLEKMAVQGVSQKFLAGM-VNFGTLMPMRAIPFKVVCLLGMNDGA 701

Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRE--NNIPT 710
           +P++     F                         E     R     +   R+  +N   
Sbjct: 702 FPRSHPPLDFDLMAEPGMYRPGDRSTREDDRYLFLEALLSARETFYLSHVGRDVRDNGER 761

Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
             S  + +L       +            +
Sbjct: 762 TPSVLVGQLRDYIDAGWTLEPGCAEPERPE 791


>gi|289207283|ref|YP_003459349.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
 gi|288942914|gb|ADC70613.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
          Length = 735

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 79/733 (10%), Positives = 183/733 (24%), Gaps = 131/733 (17%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +      + + P  L +VT    T +A  E+R     + G  +T L  + +   +
Sbjct: 38  VLVHRIAWLIGVEGVAPHSLLAVT---FTNKAAAEMRGRIEALLGHPATGL-WVGTFHGL 93

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                                +++  + ARL   ++    D    +     +   +    
Sbjct: 94  AHRL-----------------LRQHWQDARLPQGFQILDSDDQLRMVKR--VLRGLELDE 134

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
           A W  K     I+  + E  + E L    +      W+            + +       
Sbjct: 135 ARWPPKQAQWYINARKDEGARPEHLPDTGDP-VARQWVR-------IYTTYQQACERAGV 186

Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  +  +    ++       +     +++     +       +  +A       V 
Sbjct: 187 VDFAELMLRSLELLRDNKALLEHYRTRFRHVLVDEFQDTNDIQYAWLRLLAGDSP---VF 243

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       W     +                          +I+       G     
Sbjct: 244 AVGDDDQSIYGWRGARIE--------------------------NIQHFQQDYPGTQVVR 277

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
           +       +      +     N   L  ++    K  + V L  A NE+EEA  IA  + 
Sbjct: 278 LEQNYRSSANILNAANALIRHNAGRLGKELWTEDKEGAPVRLYTALNEQEEARFIAETIA 337

Query: 380 MSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
             +DE    ++ A++      +R ++       +   +  G+            + L   
Sbjct: 338 RHVDEGGLYRECAVLYRSNAQSRVLEETFIARRMPYRVYGGLRFFERQEIRDALAYLRLA 397

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
              +D  A   +V  P                                +  K+L   R A
Sbjct: 398 GNGDDDAAFLRVVNQP-----------------------------PRGIGEKTLEGLRQA 428

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
            Q  +T +    +   + D      L       +   V              ++D  +  
Sbjct: 429 AQAADTSLLQAATHAVDAD-----ALPGRARNAVAGFVQLVRTLQQELPRQPLADQVEQA 483

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA---------NAIEWIDI 608
           +   Q       R+       E G+       +++                       + 
Sbjct: 484 IERAQL------REHYKKEKGERGEARLENLDELVGAARAFDMESTAESEEGEGNRLTEF 537

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
           +                  + ++    ++ L F  + L G+ EG++P   +         
Sbjct: 538 LAHAALEAGEGAADPHEDAVQMMTLHSAKGLEFPLVFLTGMEEGLFPNARS--------- 588

Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
                L+   +   +    +       + L    +         +     R +     D 
Sbjct: 589 -----LEEPGRLEEERRLAYVGMTRAEKELYLIHAETRRLYGRESYNVASRFINEIPEDA 643

Query: 728 FDNLKKRGQCYLD 740
            + L+ +   +  
Sbjct: 644 LEVLRPQASPFGA 656


>gi|306822880|ref|ZP_07456256.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC
           27679]
 gi|304553512|gb|EFM41423.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC
           27679]
          Length = 885

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 76/695 (10%), Positives = 179/695 (25%), Gaps = 85/695 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A  E+R     + G ++  +  I +           D      L    S
Sbjct: 71  SQILAITFTNKAAAEMRERLAALVGPEAERM-WISTFHSACVRILRRDG-DQIGLKSGFS 128

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            I    +  RLI +    L   +K   P   L              +L    D ++T   
Sbjct: 129 -IYDTADSERLIKLIGADLNIDLKRYTPRMILGKISDYK------NSLISWKDQLKTYAA 181

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-----EA 219
            +      +       +    +   +    +  RL + NA       +  +       +A
Sbjct: 182 DY---RPGQRGYQLGRFDNVEELFAVVYSEYQYRLAQANAVDFDDLIMRTVELFRTCPQA 238

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I +     +  A   L+  ++          G+D         T   +  
Sbjct: 239 SDYYRHKFRYIFVDEYQDTNHAQYVLVRELS----------GIDSGEQADPHATGAGRVG 288

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
               +    S    Y+            E+                  +           
Sbjct: 289 PSWVTVVGDSDQSIYAFRGADIRNIQDFEEDFPNAKTIMLEQNYRSTQTILDAANAVIAK 348

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396
                 +     + K    +    ADN ++EA  IA  +     E        A++    
Sbjct: 349 NENRKPKKLWTALGKGDP-IIGYAADNAQQEAGYIASEITRLHTEEGIAYSDMAIMYRAN 407

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  +    +   +  G             + L AI    D + +  ++  P   
Sbjct: 408 AQSRSLEETMINANLPYQLVGGTKFYERREVKDAIAYLQAIVNPADDVNMRRILNVP--- 464

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                   +RA+  + + A R     +D ++                        ++   
Sbjct: 465 ---KRGLGARAEGLVAMYADRHGTTFFDGIEH-----------------LDQIEGMTGRT 504

Query: 517 KELAVLLVDHILQCITPLVTY-KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            +      D + + +     +           LS S   +                L  L
Sbjct: 505 AKPLGAFRDLMHELVDFAKAHDAKPSEVVAEVLSRSGLLEELQRSEDPQDASRVDNLSQL 564

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                    ++             A    +++    + D + +  + E S  + ++    
Sbjct: 565 QSVAAEFEQNTP-----------DATLAGFLETTALVADSDQLPGENEDSGKVTMMTLHT 613

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L +  + L G+ +G +P + A              ++   +   +    +      +
Sbjct: 614 AKGLEYPVVFLTGMEQGTFPHSRA--------------MEDTSELSEERRLAYVGITRAK 659

Query: 696 HLIY-----TRSLRENNIPTIASRWLQRLLVLGGT 725
             +Y      R+        + S++L  +      
Sbjct: 660 RRLYVTRAAVRAQWGQANEMMPSQFLDEIPEDLID 694


>gi|120597399|ref|YP_961973.1| DNA-dependent helicase II [Shewanella sp. W3-18-1]
 gi|146294460|ref|YP_001184884.1| DNA-dependent helicase II [Shewanella putrefaciens CN-32]
 gi|120557492|gb|ABM23419.1| ATP-dependent DNA helicase UvrD [Shewanella sp. W3-18-1]
 gi|145566150|gb|ABP77085.1| ATP-dependent DNA helicase UvrD [Shewanella putrefaciens CN-32]
          Length = 722

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 70/687 (10%), Positives = 164/687 (23%), Gaps = 117/687 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+     T +A  E+R    ++ G     +  I +   +           +  L      
Sbjct: 56  SILAVTFTNKAAAEMRERVEKVAGTNMGRM-WIGTFHGLAHRLLRTHFQDA-GLPQSFQI 113

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +    ++ RLI      L    K   P           +                 +  +
Sbjct: 114 LDSDDQV-RLIKRILKSLNLDEKQYPPRQAQGYINGKKD-----------------QGLR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + + A+               L    + + E              +             
Sbjct: 156 PKHIDAIGFP--------IEQNLLKIYQVYQESCDRAGLVDFAEILLRAHELWLNKPHLL 207

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A     A V+   D       W     ++ +
Sbjct: 208 AHYQERFKHILVDEFQDTNAIQYAWIRVLAG--QTANVMIVGDDDQSIYGWRGAQVENLH 265

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                               +  +              +     
Sbjct: 266 RFLQDFP--------------------------TATTIRLEQNYRSKGNILKASNALIAN 299

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398
           N + +  ++   +     ++L  A NE +EA  I   +    ++       A++      
Sbjct: 300 NPERMGKELWTDEADGDPISLYCAFNEMDEARFIVGRINDWHEKGGNLSDCAILYRSNAQ 359

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L   G+   I  G+              +  I   ND  A   +V  P    G
Sbjct: 360 SRVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKNDDAAFERVVNTPPRGIG 419

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                + R                    +L                          ++K 
Sbjct: 420 DRTLDILRTTAR--------------QQELTLWQACL----------------RLLDEKV 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           LA      +   +  +VT + +              + +            +    +   
Sbjct: 450 LAGRAASAVRGFMDLIVTLQEDTQDMALYRMADTVIQASGLKAMYEAEKGEKAHARIENL 509

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           EE  T +  F    E     + NA      ++              +  + ++    ++ 
Sbjct: 510 EELVTAARTFEMPEELEDMGELNA-----FLSHAALEAGEGQADAFTDAVQLMTLHSAKG 564

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + + G+ EG++P              S + L+  ++   +    +         L
Sbjct: 565 LEFTMVFMAGVEEGIFP--------------SKMALEEGDRLDEERRLCYVGMTRAMEKL 610

Query: 698 IYTRSLRE----NNIPTIASRWLQRLL 720
             T +              SR+++ + 
Sbjct: 611 YITYAESRRIYGREDYARPSRFIKEIP 637


>gi|83590844|ref|YP_430853.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073]
 gi|83573758|gb|ABC20310.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073]
          Length = 729

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 92/764 (12%), Positives = 209/764 (27%), Gaps = 124/764 (16%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             L           +   ++     T +A QE++     + G+ +  L  + +       
Sbjct: 38  RVLTYRVAALIQEGVRPENILAVTFTNKAAQEMKERLEGLVGEAARGL-WVSTFHSACVR 96

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +  L                +       +  L +++K+L  +     P S A  I 
Sbjct: 97  ILRREAHLLGYRPN--------FVIYDTDDQ-QAALKEVLKELDLDDKKYPPRSLAQVIS 147

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
           +AK      + ++T     E    L                    + + E+L ELNA   
Sbjct: 148 MAK------NDLKT----PERF--LDGAATFREQQQGQ-----IYRRYQEKLRELNAMDF 190

Query: 208 VGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
               +  +             +     I++     +  A   L+  +A   +   V+   
Sbjct: 191 DDLIMQTVFLWQQNPLVLRYYQQRWQHILVDEYQDTNHAQYILVRLLAGKGDNLCVV--G 248

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       W      +      +      P+  +  L +     R  ++    V     G
Sbjct: 249 DPDQGIYGWRGADIGNILAFEEDF-----PRARVILLEENYRSTRPILQAANAVIQHNEG 303

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
           R                      E ++   ++    + L  A +ER+E   IA  +    
Sbjct: 304 RR---------------------EKRLWTRRREGELLHLYRATDERDEGRFIAGEVYRRH 342

Query: 383 DENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
            +  +     A++      +R ++    + G+  +I  G+          + + L  I  
Sbjct: 343 QQEGRPFSDFAVLYRTHAQSRALEEAFIQAGVPYEIVGGLKFYQRKEIKDILAYLRVIAN 402

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
            +D +++  ++  P    G        A    E                    L R+  +
Sbjct: 403 PDDSLSLLRIINVPRRGIGEATLARLEAAATSEG-----------------ESLYRVLER 445

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
            +       + R               + + +  L   +  +        ++   + T  
Sbjct: 446 VDTIPGIPARGR-------------QALRELVEMLDNLRQQQEKITVTDLVATILQETGY 492

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
             +            L   +E +T++  + +     S                +      
Sbjct: 493 QAELEAERTPEAQARLENLKEFQTVTRSYDQGAPESSLGD---------FLTQVALVAES 543

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                ++ + ++    ++ L F  + L GL EGV+P   +              L    +
Sbjct: 544 DTYSGNAAVALMTMHTAKGLEFPVVFLAGLEEGVFPHFRS--------------LDDPAE 589

Query: 680 YIGQAAHDFEMANGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
              +    +      R ++Y     TR+L  + +    SR+L  +           L+  
Sbjct: 590 MEEERRLCYVGMTRAREVLYLTHAWTRNLYGSTMSNPPSRFLDEIPADLIQGEGTGLRSG 649

Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
               L  T +      +   ++P P     A  +     +    
Sbjct: 650 ---VLSRTSEERDDRGRSTRRQPAPARSTRASWQVGDKVQHDAW 690


>gi|297619071|ref|YP_003707176.1| UvrD/REP helicase [Methanococcus voltae A3]
 gi|297378048|gb|ADI36203.1| UvrD/REP helicase [Methanococcus voltae A3]
          Length = 1085

 Score = 95.0 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 92/270 (34%), Gaps = 30/270 (11%)

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
            PPL      +S S+I    + P     + +L +               G   H I   L 
Sbjct: 838  PPLVNPDMAFSPSKIVDYDSCPLMFKYKNVLSIPTPKK-----SYFSVGNTVHKIFEILG 892

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL-FHKISHSFLEHEEKIQSSIE 879
             K+IN +      + + ++  + ++++     +   +      + + + E E+      +
Sbjct: 893  DKKIN-DERITIEMAQNMLLENLKEQDFDSKTEYDEQMTNCLNMLNYWFEFEKNNVD--K 949

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
             I V     + +      + G  DRID        + DYKTG     +  + L + QL +
Sbjct: 950  IISVEEKFSINL--CNHTINGIIDRIDKTTDDNYIVLDYKTGKTALSKN-KLLNNIQLII 1006

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL-SEKSLKNLIEIV 998
             A A+K   + +           I++     I            +E   E+  +N+   +
Sbjct: 1007 YAIAVKEK-YGKYP---------IQIGH---IYPAIAKSVILDIEESKIEEIKQNIESYI 1053

Query: 999  TLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
              + N +  F      S  +    +Y ++ 
Sbjct: 1054 DKIMNED--FEVVKNPS--NCHFCDYKNIC 1079


>gi|296141008|ref|YP_003648251.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM
           20162]
 gi|296029142|gb|ADG79912.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM
           20162]
          Length = 802

 Score = 95.0 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 85/729 (11%), Positives = 201/729 (27%), Gaps = 106/729 (14%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +    R   ++P     +     T +A  E+R    ++ G ++  +  + +  
Sbjct: 60  TAVLTRRIAYLLRARGMHP---GQILAITFTNKAAAEMRERVAQLIGPRANTM-WVSTFH 115

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                   A   L       +  +     +       R  L  I+K++  ++    P   
Sbjct: 116 STCVRILRAQAGL-------LPGMNSNFSIYDADDS-RRLLTMIVKEMGLDAKKFAPR-- 165

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                    LA  I  ++ E    ED  A   +    + +  A+        +  RL   
Sbjct: 166 --------ALATQISNLKNELIGPEDAAADAAKTGEPFAVTVAE----VFGTYQARLRSA 213

Query: 203 NASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA- 256
           NA          +             +     +++     +  A   L+  +        
Sbjct: 214 NAFDFDDLIGETVGLLQSHPNVAQYYRRRFRHVLVDEYQDTNHAQYILVRELVGLEEDED 273

Query: 257 -----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                 +    D       +   T ++      +   +             L+      +
Sbjct: 274 GVTPSELCVVGDADQSIYAFRGATIRNIEEFERDFPNAETIL---------LEQNYRSTQ 324

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
            + + +N +  R+    +  L  D  D                    +    ADNE +EA
Sbjct: 325 TILSAANAVISRNAGRREKKLWTDQGDGAL-----------------ITGYVADNEHDEA 367

Query: 372 ISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
             +   +    D        A+       AR ++    R G+   +  G+          
Sbjct: 368 SFVVSEIDALSDNGIKYSDVAVFYRTNTAARVLEEVFIRHGVPYKVVGGVRFYERKEVRD 427

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           L + L AI   ND +++  +V  P    G   +               G         + 
Sbjct: 428 LVAYLRAIDNPNDTVSLQRIVNTPRRGIGDRAQACLTVHAENHGTNFGGAIADAVEGGVA 487

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
            L           + +     R++++D+     L+D +++        + + +   G   
Sbjct: 488 MLNPRSRNAIATFSGLMTELRRIADDDESDIGDLLDAVVEKTGYRAELEGSSDPQDGARL 547

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
                                 +  L       +       + + G+    +   +++ +
Sbjct: 548 --------------------DNIEELISVAREFSAQDFTDVVADEGAPEPGSLAAFLERV 587

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
           + + D + V    + +  + ++    ++ L F  + + G  +G +P   A          
Sbjct: 588 SLVADADQV--PDDDAGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRA---------- 635

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRHLIYT-----RSLRENNIPTIASRWLQRLLVLGG 724
               L    +   +    +      R  +Y      RS   + +    SR+L  +     
Sbjct: 636 ----LGDENELAEERRLAYVGITRARERLYVSRAMIRSTWGDPMQNPESRFLAEIPQHLI 691

Query: 725 TDFFDNLKK 733
                  ++
Sbjct: 692 DWRRLEPQR 700


>gi|307700038|ref|ZP_07637087.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16]
 gi|307614799|gb|EFN94019.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16]
          Length = 1213

 Score = 95.0 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 95/951 (9%), Positives = 253/951 (26%), Gaps = 183/951 (19%)

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATAR 244
               + +  R  +L  +        ++             +     +++     +  A  +
Sbjct: 320  EVIRAFNTRKAQLRFADFSDQTREVVELLKKVANISQSYQQRYQLVLLDEFQDTSVAQLK 379

Query: 245  LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
             +S +  +     V    D +     W   +  S        + +     SL      L 
Sbjct: 380  YLSALFRN---HAVTAVGDPNQAIYAWRGASAASIEEFPKYFSDNPSKVASL-----TLR 431

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV-ALIE 363
                +          +   +  I+      + ++ +N + +   +        D+  +  
Sbjct: 432  TSWRN-------DAAILNVANCIASEIAEQNRTEGKNENFIMPDLSLRPGASPDLGRVYG 484

Query: 364  AD--NEREEAISIAIALRMSLDENKK---------------------KSALITADRNLAR 400
            A    + +EA ++A  L     + ++                      +A++   +++  
Sbjct: 485  APFLTDTDEAQAVANFLENWRKDLEQAVEKTAAWQAAGRVGQPPSLPTAAVLCRKKSIML 544

Query: 401  RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
             +  EL+R GI   + A           ++ + LN +    +  +               
Sbjct: 545  PILRELSRRGIPFQLQARESALLDPGVVLVRAALNVVVNPQNSGS-----------LLLL 593

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                  ++  LE ++    +      +                     +S++     +  
Sbjct: 594  LNRFRLSREDLEAISKAAGRTVLPFQE-------------------VMKSQIGASVSQPG 634

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
               +  + + I  L  + +           +    L           E R     + EE 
Sbjct: 635  RERLAILREIIAKLEKHVSYATPLQMAKLAAKLLGL---------DIEQRIPGTPYQEEA 685

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
                 S+      +G       +EW+D+            +   +  + ++    ++ L 
Sbjct: 686  FTIFLSIIEDFERSGQATLRAFLEWLDVAESEEKEVGQFQEAVDTKKVQVITVHAAKGLE 745

Query: 641  FDTLILGGLNEGVWPKNTAKNPF-----LSRVMQ-------------SDLNLKTAEKYIG 682
            +D + + GL+EG +P N  +        L   ++               L  K   +   
Sbjct: 746  WDYVAVPGLSEGNFPDNRTEIWLKNYFVLPYPLRGDRDSLPQYEINLRQLGEKDRSRKFL 805

Query: 683  QAAHDFEMANGTRH------LIYTRSLRE-----------NNIPTIASRWLQRLLVLGGT 725
            +        +  +       + +TR+              N        + + LL     
Sbjct: 806  EQYDGVRTLHHLKEEANLAYVAFTRAKSHLFLSMSWFKGCNVNTAKPGAFFRVLLGEDAK 865

Query: 726  DFFDNLKKRG---------QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
             F      +G             DW   ++    +P    P          +  S+ ++ 
Sbjct: 866  LFCMEKPNKGMTLVNSQEFMHLPDWLGDINPCFTEPEEANPNVQEFEAGLWQAPSWLDLP 925

Query: 777  QLINDPYAVY---------ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
                 P              + +      P   +  +    G+L   +       R   +
Sbjct: 926  PESIRPETFPWDVAGLQRSYQMVTVAAENPPDSQALESAIPGSLSWRVWKLYNAPRPRLD 985

Query: 828  TPEINHL--------MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE---------- 869
            +  +           + +  D    ++  P  +          I H+++           
Sbjct: 986  SSMLLRQIAATSVVKLDESSDDFMLQKLRPLPLPPSPAARLGIIMHAWIAQQLGQPTLDI 1045

Query: 870  ----------------------HEEKIQSSIEKIF-VNIPAKMAIESI--GIHLTGFADR 904
                                   E       + +  +     + +     G  +    D 
Sbjct: 1046 PDGSEATLDADSRLKLDCYRQTWENLQFLKGKAVMDIEHSGSLVVGEGTEGFEVPLRIDA 1105

Query: 905  IDLLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            +   +S G   I D+KT  +P     ++ +  QL +        +  ++D + +    Y+
Sbjct: 1106 VFQERSCGTTWIVDWKTASHPNPPQYERYLH-QLGIYRL-YWLQTHPELDSQDI-QCAYV 1162

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014
             LK+      +   +      ++ + + + L +++   +     F+S   L
Sbjct: 1163 YLKEGETEHQVLTLESILEHLKMPDYTPEYLYKLLKRGETEATEFLSQKNL 1213


>gi|320108905|ref|YP_004184495.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
 gi|319927426|gb|ADV84501.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
          Length = 1126

 Score = 95.0 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 92/922 (9%), Positives = 227/922 (24%), Gaps = 136/922 (14%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE--ITGK 70
            P +   R ++ A + G L +              + +   + +A  E+            
Sbjct: 218  PGTGKTRTLV-ARVEGLLADGVDPR--------RILVLTFSNKAASEMGERIARKHREAA 268

Query: 71   KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
             +     + +      +           L      + R             +  ++++D 
Sbjct: 269  AAMW---VGTFHAFGLD-LVRRFFTELGLPRDPRMMDRT------------EAVELLEDR 312

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            +P   L    +  +   +   +   I   + E    E+   L            A  +  
Sbjct: 313  FPSFNLRHYRNIYDPTQIITEILTAISRAKDEVVDAEEYARLAGSMGSSEAAERAAEVAQ 372

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARL 245
                +     + N        +  +R           ++     +I+        ++ RL
Sbjct: 373  VYGAYERLKRDANCVDFGDLVLLPVRLLETSPDIRSHIQSLYDHVIVDEYQDVNRSSTRL 432

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            ++ +   P+G  +    D       +   +  S     +                     
Sbjct: 433  LAALK--PDGHNLWVVGDAKQSIYRFRGASPFSMMRFGTQD------------------- 471

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA--LIE 363
                    G     +       ++      T          ++  +  +  + +   L+ 
Sbjct: 472  ------FPGAKRERLGQNYRSSAEIVNAFSTFAATMRLGAGSRALHADRGPNGIHPKLLC 525

Query: 364  ADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
                 ++A+++A ++++   E    ++ A++         +  EL   GI +       L
Sbjct: 526  VRRAEQQAVALADSIQVLRSEGLTYREQAVLCTGNEKLSTLARELEVLGIPVLFLG--SL 583

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                    L SLL+ +      M +  L   P  K  F +   +     L L  +     
Sbjct: 584  FERPEVKDLLSLLSVLIDR-RAMGLVRLGCWPEFKMQFADV--AATLEFLRLTEVSPGAW 640

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
               +  +  +         +     H   + S     L  LL+DH            ++ 
Sbjct: 641  LQSVDGIPKITDQGARALTSLGVALHGFDQSSSPWTVLVTLLLDHTRMA----ARLGSSV 696

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
            N    + +I+ W +                   L        L                 
Sbjct: 697  NIADRSRAIAIW-QFLNFLRVQPSGQGLPITRLLDRVRRLVRLGDDRDL----------- 744

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN---- 657
                            +    +    + +L    ++ L F    + G+N    P+     
Sbjct: 745  --------------RQLPNAAQGLDAVRLLTIHGAKGLEFSATHIPGVNADTIPRVSSAP 790

Query: 658  --TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS--LRENNIPTIAS 713
                    +     S L      +   Q    +   +  +  +   +   + N      S
Sbjct: 791  ICPPPEGMIQGATASSLETYREGQVEEQECLFYVALSRAKGHLLFYAPMEKSNGHNRPLS 850

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
             +L R+            +                   P          +   P  +   
Sbjct: 851  SFLDRIGTTLIRTVVVPQRS-----------------IPEAAEEAALQIVFDGPMRFGAP 893

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            +I    + P   +   IL++             D       I+  LI         ++  
Sbjct: 894  QIALYESCPRRFFYTHILQVGGRRTSTAFMKMHD---AVRMILATLIIDGKPAGPEDLED 950

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
             ++  + +    E         +  L   +   F+  +E   +        +P  + ++ 
Sbjct: 951  RIEAALKTV---ELADHGHRNEFSALALTMLRYFVSTQEGCAN-------EVPVAINLKF 1000

Query: 894  IGIHLTGFADRIDLLKSGFVDI 915
                +   AD I +       +
Sbjct: 1001 GDEEIVVRADDILIRPDQSRVV 1022


>gi|258406095|ref|YP_003198837.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
 gi|257798322|gb|ACV69259.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
          Length = 1132

 Score = 95.0 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 75/786 (9%), Positives = 172/786 (21%), Gaps = 70/786 (8%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG--------TKGPIIIA 233
                  LK+A+               +   +    A  E                 I++ 
Sbjct: 364  QALLAVLKLATAQLLLVFQGAGEVDFIEIGMQARHALGEPQAPTDLALSLDYRIQHILMD 423

Query: 234  GSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY-- 288
                +      L+  +       +G       D       +           + N     
Sbjct: 424  EFQDTSVTQFELLERLVAGWQPDDGRTFFGVGDPMQSIYRFREAEVGLFLQAARNGIGDI 483

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
               P            +         +V       +M  +  + P  T    N +   + 
Sbjct: 484  PLEPLVLSVNFRSQAGVVNWVNAVFPDVMPTQPE-AMTGAVPYTPSQTIRAANAEHAVSV 542

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
             P      +  A   A + +    ++            ++ A++    N    +   L R
Sbjct: 543  HPRRAANEAAEAEEVAASIQTTLETV---------PQHERIAVLARAANHLVPIVQRLRR 593

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
             GI        P+      S L +L  A+ +  D +A   +++ P       +       
Sbjct: 594  DGIPFQAVDIDPVIEKPVVSDLLALTRALARPADRLAWLAVLRAPWCGLSAGDLCTVA-- 651

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                     G         ++   +      +    V   +  L + +       V+   
Sbjct: 652  -----QECSGPLWPALEGAVQEQTVSASGQHRLQRVVGSLRPVLEQREYIAFYKGVEMAW 706

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
              +                    +  ++    L+++        P    E      +   
Sbjct: 707  HALGGPACLTDADEQ--------EAARVFFELLRHLSTGGRTPSPEEVEEGLANLRARPE 758

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                     +  +  + ++  T +I G            L                    
Sbjct: 759  PDGAARVQLMTIHKAKGLEFETVIIPGLGRGTPPVDRRLLMWQEVPRDTGGE-------- 810

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
              + +               +    L+  +  + +    +      R  ++     +   
Sbjct: 811  --DLLLAPVPPTGGKPEATYRYIQQLEKTKTRLEEGRVLYVAVTRARERLHLFGAAKQRA 868

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                +     LL L      D  +       D         +    +R      + A P 
Sbjct: 869  DGTLAPVSGSLLELLWPHVKDRFEACQGAAEDQEGVQPEAQQGYWLRRLPANWEVPAVPV 928

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
                S                  +++              GT+ H  +  + ++      
Sbjct: 929  RVGGSARG----------VEGQSRVERPEFDWAGRTVRRIGTVIHRWLMRVAQETEQHWH 978

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIP 886
                   ++        E +             +     L         +S  +     P
Sbjct: 979  ERSLARCREAFRRDLVGEGVVGPELSAAVDRVEQALAQILSDRRGQWLLASHSEARCEYP 1038

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-------QLSL 939
               A++     +    DR  +   G   I DYK G        +  +D        QL  
Sbjct: 1039 LTGALDGELHSV--VLDRTFVDGQGQRWIVDYKAGR-HSGSDLEAFLDREQERYREQLET 1095

Query: 940  EAAALK 945
             A  + 
Sbjct: 1096 YARLVA 1101


>gi|296282686|ref|ZP_06860684.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 769

 Score = 95.0 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 72/591 (12%), Positives = 154/591 (26%), Gaps = 72/591 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+R       G     +P + +   +  +                 
Sbjct: 68  SEILCVTFTNKAAREMRERVGRHIGDAVEGMPWLGTFHAIGAKM---------------- 111

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +    PD    L     L          W A+ LA +ID  +    
Sbjct: 112 -LRRHAELVGLQSNFTIIDPDDQLRLLKT--LIAEADLDEKRWPARQLAGLIDRWKNRGL 168

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH--- 221
              DL A++NE Y               K +  RL  LNA       + ++    +H   
Sbjct: 169 NPGDLDAVENEAYANGRGAQL------YKTYQARLQSLNACDFGDLLLHMLNIFRQHSDV 222

Query: 222 --LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +       +  +A H     V+   D       W      + 
Sbjct: 223 LEQYQNRFKYILVDEYQDTNQVQYLWLRLLAQHRKNICVV--GDDDQSIYSWRGAEVANI 280

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      P   + KL          +     +  E   R                
Sbjct: 281 LKFEKDF-----PGAKVIKLEQNYRSTPHILGAASGLIGENSQR---------------- 319

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRN 397
                L  ++         V +I   +  EEA  +   +           + A++   + 
Sbjct: 320 -----LGKELWTETDTGEKVRVIGVWDGPEEARRVGEEIESLERGGTGLDEIAILVRAQY 374

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP---- 453
             R  +    + G+   I  G             + L  I +  D +A   +   P    
Sbjct: 375 QTREFEDRFIQIGMAYRIVGGFRFYERAEIRDALAYLRVIAQPADDLAFERIYNQPKRGL 434

Query: 454 -------LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                  + +          A +     +      +   +        +   Q ++    
Sbjct: 435 GAKTLEKMYQHARRTGMPLAAASLDLADSDELPARARGTIGGLMRQFLQWREQADSLAPA 494

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
               ++ EE    A+L  +   +    L        +     ++ D+ +  V  + +   
Sbjct: 495 ELLRQVLEESGYQAMLENERTPEAKGRLENLSELARAMEDYETLGDFLE-HVALVMDNDA 553

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
           +       +      K L      ++     +  +     +     ++ E 
Sbjct: 554 NAEDAKVTIMTIHAAKGLEFDHLFLVGWEEGVFPSQRSLDEGGLASLEEER 604


>gi|158340761|ref|YP_001521929.1| hypothetical protein AM1_D0120 [Acaryochloris marina MBIC11017]
 gi|158311002|gb|ABW32615.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 262

 Score = 95.0 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 70/233 (30%), Gaps = 24/233 (10%)

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
            T S +++      P A   R    L     F         G   H  + ++ K      
Sbjct: 3   YTLSATKLITYQQCPKAYNFRYERGLSSPSAF----GSPAFGIALHKTLADIYKDWNYDY 58

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN--I 885
                         H  +    P                ++    +I+   + I V   I
Sbjct: 59  PLPSLDWFAMCWQHHTGELK--PAQIHEGWMALQLYYEKYVAPLPQIR---KPIGVEGKI 113

Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN--PKKETAQKLIDPQLSLEAAA 943
            A   + +I   +TG  DR+D   +G +++ DYKT     P        ID QL L    
Sbjct: 114 KASFQVNNIEFSITGRYDRLDYTDNG-LELIDYKTSKTIGPS-----DGIDLQLGLYFLI 167

Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
           L+             +L Y+R  QK   D   +  ++    EL       L  
Sbjct: 168 LEQIYPE---ALDTLSLIYLRQGQKVSFDVTPDHHQQVR--ELIGDIAVKLRA 215


>gi|227875854|ref|ZP_03993980.1| UvrD/REP helicase [Mobiluncus mulieris ATCC 35243]
 gi|306819135|ref|ZP_07452849.1| UvrD/REP helicase subfamily [Mobiluncus mulieris ATCC 35239]
 gi|227843602|gb|EEJ53785.1| UvrD/REP helicase [Mobiluncus mulieris ATCC 35243]
 gi|304648111|gb|EFM45422.1| UvrD/REP helicase subfamily [Mobiluncus mulieris ATCC 35239]
          Length = 1213

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 95/951 (9%), Positives = 253/951 (26%), Gaps = 183/951 (19%)

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATAR 244
               + +  R  +L  +        ++             +     +++     +  A  +
Sbjct: 320  EVIRAFNTRKAQLRFADFSDQTREVVELLKKVANISQSYQQRYQLVLLDEFQDTSVAQLK 379

Query: 245  LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
             +S +  +     V    D +     W   +  S        + +     SL      L 
Sbjct: 380  YLSALFRN---HAVTAVGDPNQAIYAWRGASAASIEEFPKYFSDNPSKVASL-----TLR 431

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV-ALIE 363
                +          +   +  I+      + ++ +N + +   +        D+  +  
Sbjct: 432  TSWRN-------DAAILNVANCIASEIAEQNRTEGKNENFIMPDLSLRPGASPDLGRVYG 484

Query: 364  AD--NEREEAISIAIALRMSLDENKK---------------------KSALITADRNLAR 400
            A    + +EA ++A  L     + ++                      +A++   +++  
Sbjct: 485  APFLTDTDEAQAVANFLENWRKDLEQAVEKTAAWQAAGRVGQPPSLPTAAVLCRKKSIML 544

Query: 401  RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
             +  EL+R GI   + A           ++ + LN +    +  +               
Sbjct: 545  PILRELSRRGIPFQLQARESALLDPGVVLVRAALNVVVNPQNSGS-----------LLLL 593

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                  ++  LE ++    +      +                     +S++     +  
Sbjct: 594  LNRFRLSREDLEAISKAAGRTVLPFQE-------------------VMKSQIGASVSQPG 634

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
               +  + + I  L  + +           +    L           E R     + EE 
Sbjct: 635  RERLAILREIIAKLEKHVSYATPLQMAKLAAKLLGL---------DIEQRIPGTPYQEEA 685

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
                 S+      +G       +EW+D+            +   +  + ++    ++ L 
Sbjct: 686  FTIFLSIIEDFERSGQATLRAFLEWLDVAESEEKEVGQFQEAVDTKKVQVITVHAAKGLE 745

Query: 641  FDTLILGGLNEGVWPKNTAKNPF-----LSRVMQ-------------SDLNLKTAEKYIG 682
            +D + + GL+EG +P N  +        L   ++               L  K   +   
Sbjct: 746  WDYVAVPGLSEGNFPDNRTEIWLKNYFVLPYPLRGDRDSLPQYEINLRQLGEKDRSRKFL 805

Query: 683  QAAHDFEMANGTRH------LIYTRSLRE-----------NNIPTIASRWLQRLLVLGGT 725
            +        +  +       + +TR+              N        + + LL     
Sbjct: 806  EQYDGVRTLHHLKEEANLAYVAFTRAKSHLFLSMSWFKGCNVNTAKPGAFFRVLLGEDAK 865

Query: 726  DFFDNLKKRG---------QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
             F      +G             DW   ++    +P    P          +  S+ ++ 
Sbjct: 866  LFCMEKPNKGMTLVNSQEFMHLPDWLGDINPCFTEPEEANPNVQEFEAGLWQAPSWLDLP 925

Query: 777  QLINDPYAVY---------ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
                 P              + +      P   +  +    G+L   +       R   +
Sbjct: 926  PESIRPETFPWDVAGLQRSYQMVTVAAENPPDSQALESAIPGSLSWRVWKLYNAPRPRLD 985

Query: 828  TPEINHL--------MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE---------- 869
            +  +           + +  D    ++  P  +          I H+++           
Sbjct: 986  SSTLLRQIAATSVVKLDESSDDFMLQKLRPLPLPPSPAARLGIIMHAWIAQQLGQPTLDI 1045

Query: 870  ----------------------HEEKIQSSIEKIF-VNIPAKMAIESI--GIHLTGFADR 904
                                   E       + +  +     + +     G  +    D 
Sbjct: 1046 PDGSEATLDADSRLKLDCYRQTWENLQFLKGKAVMDIEHSGSLVVGEGTEGFEVPLRIDA 1105

Query: 905  IDLLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            +   +S G   I D+KT  +P     ++ +  QL +        +  ++D + +    Y+
Sbjct: 1106 VFQERSCGTTWIVDWKTASHPHPPQYERYLH-QLGIYRL-YWLQTHPELDSQDI-QCAYV 1162

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014
             LK+      +   +      ++ + + + L +++   +     F+S   L
Sbjct: 1163 YLKEGETEHQVLTLESILEHLKMPDYTPEYLYKLLKRGETEATEFLSQKNL 1213


>gi|299532528|ref|ZP_07045918.1| UvrD/REP helicase [Comamonas testosteroni S44]
 gi|298719475|gb|EFI60442.1| UvrD/REP helicase [Comamonas testosteroni S44]
          Length = 827

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 74/708 (10%), Positives = 177/708 (25%), Gaps = 107/708 (15%)

Query: 50  YVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
              T +A +E+ +    +     +      I +   +      A    +  L      + 
Sbjct: 80  VTFTNKAAKEMLTRLSAMLPYNVRGMW---IGTFHGLCNRLLRAHYQAA-KLPQAFQILD 135

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
              +L+ +  + +    D  +                     K L   I   + E  +  
Sbjct: 136 TQDQLSAIKRLCKQFNVDDERFPP------------------KQLMYFIAGCKEEGMRPG 177

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HL 222
           D+ A   +                 + + E+             +       +     H 
Sbjct: 178 DVVATDPDTRKK---------VELYQLYEEQCQREGVVDFGELMLRSYELLRDDVHLRHH 228

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVA------NHPNGAIVLPGLDCHIPTAIWNTITE 276
            +     I++     +     + +  +A       + + A V+   D       +     
Sbjct: 229 YQRRFQHILVDEFQDTNKLQYQWLKQLAGDDVGGRYESAASVIAVGDDDQSIYAFRGARV 288

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            +                        L+        + + +N +                
Sbjct: 289 GNMADFIREFDVKNQI---------KLEQNYRSYSNILDCANALI--------------- 324

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALIT 393
               N++ L   +   Q     V + EA ++  EA  +   ++  +  +    ++ A++ 
Sbjct: 325 --SHNSNRLGKNLRTSQGPGEPVRIYEAPSDLAEAAWMVDEIKQLVRNDGFTRQEIAVLY 382

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R ++  L    I   +  G+            + L  +   +D  +   +V  P
Sbjct: 383 RSNAQSRVIESALFNSKIPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFLRVVNFP 442

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G     + +        +L     +        L                   R  
Sbjct: 443 ARGIGARTIEVLQDTARSSGTSLSDAVTAVGGTAGTKLQGFVAQIDVLREQTQGRTLREI 502

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            E  E    L++H           +  +       S     +        + LDE +  P
Sbjct: 503 IETVEEQSGLIEHYRNEKEGADRIENLQELVTAAESFV-TQEGFGRDAVAMPLDEQQNAP 561

Query: 574 NL--------------WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
            L                +E  K  +   + ++   +    + ++   +   L  G+   
Sbjct: 562 QLSQSPVSQGLDPNQPQLDEALKAPAGTAASMVNADTGETLSPLQAFLVHAALEAGD--N 619

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                   + ++    S+ L FD + +GG+ E           F       D      E+
Sbjct: 620 QAQAGQDAVQLMTVHASKGLEFDAVFIGGVEE---------GLFPHENAMMDRGGLEEER 670

Query: 680 YIGQAAHDFEMANGTRHLIYTRSL----RENNIPTIASRWLQRLLVLG 723
            +   A    +    + L  + S            + SR+   L    
Sbjct: 671 RLAYVA----ITRARKRLYLSHSQTRMLHGQTRYNVKSRFFDELPEEA 714


>gi|221632334|ref|YP_002521555.1| ATP-dependent DNA helicase pcrA [Thermomicrobium roseum DSM 5159]
 gi|221156871|gb|ACM05998.1| ATP-dependent DNA helicase pcrA [Thermomicrobium roseum DSM 5159]
          Length = 771

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 79/739 (10%), Positives = 191/739 (25%), Gaps = 106/739 (14%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A +E+R     + G +S  L    +   +       D      L P  +     
Sbjct: 99  VTFTNKAAREIRERLGGLLGTESAQLVQAGTFHSLCVRILRRDGYR-IGLEPAFTIYDEE 157

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            +LA L+      L    +   P   L                   +   + ++    DL
Sbjct: 158 DQLA-LVKQALRDLGLDPQRFSPRMLLGR-----------------LSRAKNDQHSPSDL 199

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----K 224
            ++       +W   A       + + + L    A       +  +    E+       +
Sbjct: 200 QSMAQS----YWDEVAA---RVYERYAQYLQRAQAVDFDDLLLRTVELFTEYPDVLAHYQ 252

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                + +     +     +L+  +A+      V+   D       W     ++      
Sbjct: 253 DRWRYLQVDEYQDTNRLQYQLVRQLASGHRNLCVV--GDPDQSIYSWRQADIRNILEFQR 310

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
           +   +T         +  L        ++   ++ +   +    +  L  +         
Sbjct: 311 DFPDAT---------VIRLGRNYRSTPQIVAAADAVIRVNRQRIERPLWTENPPGPP--- 358

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITADRNLARR 401
                         + L+   +E++EA  +      L  + +   +  A++      +R 
Sbjct: 359 --------------IRLLACWDEQQEAEMVVSEIDRLVRTGNARYRDIAVLYRINAQSRS 404

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           V+  L R  I   +  G+            +LL  +    D++++  ++       G  E
Sbjct: 405 VEEALVRRQIPYQVIGGVRFYERKEIKDALALLRVLVNPRDWLSLRRVLSETAFGRGIGE 464

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
           K L                          L       Q +   V        EE   LA 
Sbjct: 465 KTLL------------------------QLEQWGQRQQCSPADVLLLLVEEREEAPALAA 500

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             V  + +    LV  +        +       + +    +     +  +        + 
Sbjct: 501 ATVRRLRELGGELVRLRAAMVEHPASQLFDLALERSGLAARYRDASDPTERERWENLVQL 560

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
           +++   +  +                 +        +         + +L    ++ L F
Sbjct: 561 RSVLERYDTVPAAEG--------LPLFLEEAALVAAIDEAEMSGDQVTLLTLHAAKGLEF 612

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
             + L G+ EG+ P   A         +  L      +   +    +           +R
Sbjct: 613 PVVFLIGVEEGLLPHARALESEAELEEERRLFYVGITRAKERLYLSYCS---------SR 663

Query: 702 SLRENNIPTIASRWLQRLL---VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
           +        + S +L  L    V  G+   + + +           ++ +       R  
Sbjct: 664 NRFGLRERCLPSHFLDDLPPDVVEAGSRASERVPRVAPPAGGHAGPVESSAPVVPRLRAG 723

Query: 759 PFPPLEAQPRTYSFSEIKQ 777
                 A    +  +  +Q
Sbjct: 724 QRVFHPAFGDGFVVAVREQ 742


>gi|330443998|ref|YP_004376984.1| ATP-dependent helicase PcrA [Chlamydophila pecorum E58]
 gi|328807108|gb|AEB41281.1| ATP-dependent helicase PcrA [Chlamydophila pecorum E58]
          Length = 637

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 78/686 (11%), Positives = 178/686 (25%), Gaps = 117/686 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +EL+   +    +    LP++ +   +                     
Sbjct: 52  EILAVTFTNKAAKELKERIMHQCPQAQYDLPMVCTFHSLG-------------------- 91

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETEE 163
              +  L R + +   +   II D      L       + +   L  ++   I   +   
Sbjct: 92  ---VFILRRSLHLLNRENNFIIYDQGDAEKLIKRCLQQHNLKQNLVDSMQYHISQAKNRL 148

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR-----AE 218
              EDL     + Y          +    K + ++L E NA          ++     AE
Sbjct: 149 LSPEDL---DPQDYVDP-------VVTIYKEYQKKLEETNALDFDDLLFLTVKLFKTCAE 198

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
           A    +     ++I     +  A   +   +++      +    D       W      +
Sbjct: 199 ARQEYQELWKALLIDEYQDTNHAQYTMAQIISDQHRN--IFAVGDPDQSIYSWRGANIHN 256

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       +PQ  + +L                                   +   
Sbjct: 257 ILNFE-----QDYPQAQVLRL---------------------EENYRSYGNILNAANALI 290

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395
             N   L+ ++ +++     + L     +REEA  +A  +     +++   +   +    
Sbjct: 291 QNNASRLKKELRSVRGPGEKIRLFLGKTDREEADFVAEEILKIHRKSQIALRNFCIFYRT 350

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R  +  L R  I  +I  G+          + + L      ND +A    +  P  
Sbjct: 351 NFQSRTFEDALLRRRIPYEILGGLSFYKRREIQDILAFLRMFSAKNDLIAFERTLNLPKR 410

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G             E                                         + 
Sbjct: 411 GLGPAAISSLNHYALTE--------------------------------GLSLLEACKKT 438

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            K   V L     + +   ++             +S++    +   Q + + +       
Sbjct: 439 LKTQDVKLSKKQQEGLKDYLSIFQQMEVAYETQPLSEFMISLLRITQYLNILKEDPDSFE 498

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             +     L S   +  +        A      +  L    +   +   S  + ++    
Sbjct: 499 DRKNNLDELISKTFEWEQQNPEGSLEA-----FLDDLALKSSTDEEDLISDRVNLMTLHN 553

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
            + L F    + GL E ++P   +K  + +   +  L      +     A D       +
Sbjct: 554 GKGLEFRIAFVVGLEENLFPHANSKGNYENLEEERRLCYVGITR-----AQDLLYLTAAQ 608

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLV 721
             +   ++R        SR+L+ +  
Sbjct: 609 TRLLWGTVRVMK----PSRFLKEIPR 630


>gi|313113915|ref|ZP_07799473.1| UvrD/REP helicase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623754|gb|EFQ07151.1| UvrD/REP helicase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 892

 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 84/761 (11%), Positives = 198/761 (26%), Gaps = 120/761 (15%)

Query: 4   KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLL--ASVTIYVPTKRAIQELR 61
           + P       +    + +  A++ GT   ++    L    +   +V     T +A  EL+
Sbjct: 71  QTPR----PATEDDIKALRNAIMTGTAAPSWLDGMLRQNAVRSWNVMAITFTNKAAGELK 126

Query: 62  SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
                + G +          GD V         +          ++R  E       +  
Sbjct: 127 ERLRRMLGGEE---------GDEVFASTFHSACVRI--------LRRWAEEIGYPRSFTI 169

Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              D  + +       L +           +   I+ +   +   + L + +        
Sbjct: 170 YDTDDSQRVMKAVYKDLNVDDKFLP-----IKAAINQMSRWK---DQLVSPEQALASPAK 221

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGST 236
                        + +RL E  A          ++  AEH       +     +++    
Sbjct: 222 DTKGALTARIYAAYEKRLKEAGAFDFDDLIYQTVQLLAEHKDVRDFYQNKYRYLLVDEYQ 281

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
            +  A  RL+S +        V+   D       +   T ++                  
Sbjct: 282 DTSVAQFRLVSLLTGPEKNICVV--GDDDQSIYRFRGATIENILNFERIYP--------- 330

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
                            G  +  +       S      +     NT+     +       
Sbjct: 331 -----------------GTKTIRLEQNYRSTSNILNAANCVIQHNTERKGKTLWTSNGEG 373

Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKKS--ALITADRNLARRVKLELTRFGINID 414
             V +  A+NE++EA  IA  +   L E    +  A++      +  ++   TR GI   
Sbjct: 374 DKVQVYTAENEQDEASHIADVIGQHLKEGGHLADHAILYRMNAQSAPIESYFTRAGIPHK 433

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
           I  G   +       + S ++ +    D + +  ++  P                     
Sbjct: 434 IVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEP--------------------- 472

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                K     +++ + +  +      +      Q           +       +    L
Sbjct: 473 ---ARKIGATTVEVIADLATQEGVSMLDIIGHADQYAKLSRAVMPLLKFWQIYQRLQDSL 529

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
            T   ++ +       +D  +LT                     +    L +      + 
Sbjct: 530 ETRTLDEFA-------ADVIELTGYKAMLEADAAKGHEDAADRLQNLGQLVNNVKNYCDQ 582

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
               +A    +   +  +     +    E +  + ++    ++ L F  + L G+ EGV+
Sbjct: 583 -HGEEATLEGY---LEDIALISDIDSYNESADQVVLMTIHSAKGLEFPYVFLIGMEEGVF 638

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRE----NNIP 709
           P   +K               +      +    +       + L  + S+          
Sbjct: 639 PSEMSKY--------------SEADLEEERRLAYVGITRAKKELYISNSVSRMLYGRTQR 684

Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
              SR+L+ +      +    + ++   +  W      T  
Sbjct: 685 NEPSRFLREIEPEYIEETRSPVLEQRSRFGGWGDSYRDTVP 725


>gi|302392153|ref|YP_003827973.1| hypothetical protein Acear_1398 [Acetohalobium arabaticum DSM 5501]
 gi|302204230|gb|ADL12908.1| conserved hypothetical protein [Acetohalobium arabaticum DSM 5501]
          Length = 870

 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 69/544 (12%), Positives = 158/544 (29%), Gaps = 62/544 (11%)

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL-QNVCLDEHRKLPNLWFEEEGKT 583
            + I   + P            G  S+S +       + + +  + ++   N++F    + 
Sbjct: 355  ELIDDQLAPFRAVVEEIEQISGLRSLSGFCSYLEGLVVEKLADNRYKNDLNIFFGSLAEL 414

Query: 584  LSSLFSKIIETGSCIKANAIE--WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
             S     I+++ +    N  +  ++ I+  L          +  + + +   L S  +N 
Sbjct: 415  NSITEMGIVDSWNQYFTNNAQGLFLLILRYLRFKRVETTVDDSGAEVEVKDLLTSSFVNR 474

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
            + +++  + EG+ P+       L+   ++ + LKT ++   +  + F     +       
Sbjct: 475  NRIMMLNVVEGIVPRAEEAAFLLTESQRTQVGLKTYQQQRLEMKYKFFRHLLSSEQAVIF 534

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK---------QP 752
            SL+        S +++ L  L        ++  G  Y +  + +                
Sbjct: 535  SLKNEEQNIAVSSFIEELQ-LKYNLPTKEVEITGADYPEIIKSIFDCDSCLLGVDEKLAD 593

Query: 753  HYKRPKPFPPLEAQPRTYSFS--EIKQLIN-DPYAVYARRILKLD-FIPHFKKDPDRTDR 808
             Y         +   +  S +  +   L     Y  Y  ++  L+     F ++      
Sbjct: 594  KYSDRLEIEAEDFANQRLSLTYYKYSTLKRYCSYRFYLEQLAGLEAEQMEFSRELSPKVL 653

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID----------IIWRH 858
            G L H +  E+I +  ++         K++I     ++     +            +   
Sbjct: 654  GILVHRVFEEMINRVGDRIKDGGYKPEKEVIKEVITEKVASFDLKIPGYYEEYYEEVIFK 713

Query: 859  LFHKISHSFLEHEEKIQSS--------IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
               +    FL                            M  E + I L G  D +     
Sbjct: 714  AVQESVEYFLTVLPDRVKGNIKDIVTEWMPAQDESRVFMESEEVEIQLNGRIDLVIET-D 772

Query: 911  GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
                I DYKTG              QL L +              +   +          
Sbjct: 773  ESKHIIDYKTGR---------GNTEQLDLYSLLYNQ-------ELEAGEMI------DKS 810

Query: 971  IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
            I  + + K         E+    L  ++       + +       +    + +Y  + +V
Sbjct: 811  IYNVMDQKFDRGYRGSEERFRDKLRNLLEEAIIDSKEYQGQ---FKSRCKRCDYIDICKV 867

Query: 1031 AEWR 1034
              WR
Sbjct: 868  G-WR 870


>gi|296394679|ref|YP_003659563.1| RecB family exonuclease [Segniliparus rotundus DSM 44985]
 gi|296181826|gb|ADG98732.1| RecB family exonuclease [Segniliparus rotundus DSM 44985]
          Length = 294

 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 70/218 (32%), Gaps = 15/218 (6%)

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
            +    S S        P     R I ++   P          RGTL H  + EL+    
Sbjct: 11  GRRLALSPSRASDFRQCPLLYRLRAIDRIPQPPTL-----AMVRGTLVHAALEELLALPA 65

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS---FLE--HEEKIQSSIE 879
              T +    +          E    H   +  H   ++       L      +  + + 
Sbjct: 66  ESRTLDAAAELIAPSWQRVSGEMPEDHRLDLDEHGLSQLFEQSKTLLAMYFALEDPARVT 125

Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
                +  ++ +E   + L GF DR+D L  G + + DYKTG  P      K +  Q+  
Sbjct: 126 PSACELRVEVDLEP-DVPLRGFVDRVDELADGELRVVDYKTGRAPGGPYEAKAL-FQMKF 183

Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
            A AL       +  +++  L Y+        +    +
Sbjct: 184 YALALWK--LRGVVPQEL-RLMYLGSGDTLTYEPDPGE 218


>gi|262182885|ref|ZP_06042306.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 841

 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 85/724 (11%), Positives = 191/724 (26%), Gaps = 85/724 (11%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +    R   + P     +     T +A  E++    ++ G  +  +  + +  
Sbjct: 73  TAVLTRRIAYLMRERGVAPW---QILAITFTNKAAAEMKERVGQLVGPVAERM-WVSTFH 128

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            +       +  L       V  +     +            D  + L       + +  
Sbjct: 129 SICVRILRNNAQL-------VPGLNTNFTIYD---------GDDARRLLTMIAKDMQLDL 172

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI----ASKYWTER 198
                 A+ LA+ I   + E    E        +         +  +I      + +  R
Sbjct: 173 KKYS--ARVLANQISNRKNELISPE--------QARAEAERTKNPFEITVASVYEEYQRR 222

Query: 199 LVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANH- 252
           L   N+         ++R   +H       +     ++I     +  A   L+S +    
Sbjct: 223 LRAANSVDFDDLIGEVVRIFNQHPQVVEFYRRRFKHVLIDEYQDTNHAQYALVSALVGRG 282

Query: 253 ---PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
              P+   +    D       +   T ++            +PQ     L       +  
Sbjct: 283 ELPPDAPELCVVGDSDQSIYAFRGATIRNIQEFE-----RDYPQAHTILLEQNYRSTQTI 337

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
           +     V  +  GR                      E  +         +    ADNE +
Sbjct: 338 LNAANAVIAKNEGRR---------------------EKNLWTAHGQGEQIVGYVADNEHD 376

Query: 370 EAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
           EA  IA  +    D        A++    N +R ++    R GI   +  G         
Sbjct: 377 EARYIASEIDSLADKGTAYSDIAVMYRTNNASRALEDIFVRSGIPYKVVGGTRFYERREI 436

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             L + L  +   +D +++  ++  P    G   +           V+            
Sbjct: 437 RDLVAYLRIMDNPDDTVSLRRIINVPKRAIGDKAQAQIALHAENLGVSFGAALRDAAAGK 496

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
           +  L    +        +                   D + + +  L+     +     +
Sbjct: 497 VAGLGTRAVNAVSKFNEMMEGVRAQIPGMVNEVTGQPD-LGELLNALLDATGYRAELENS 555

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
               D  +L    L  +             E       +  +  +  G     +   +++
Sbjct: 556 NDPQDGARL--DNLNELVSVAREFSSEAANEMAFLGADAEEAPELSEGEAAPGSLQAFLE 613

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            ++ + D + +     +S  + ++    ++ L F  + L G  +G +P   +        
Sbjct: 614 KVSLVADADQIPDH--ESGVVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMRSLGDPKELS 671

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
            +  L      +   Q                 RS   N +   ASR+L  +        
Sbjct: 672 EERRLAYVGITRAREQLY-----LTRA----ILRSSWGNPVTNPASRFLAEVPEDLIDWR 722

Query: 728 FDNL 731
            +  
Sbjct: 723 REEP 726


>gi|94967078|ref|YP_589126.1| ATP-dependent DNA helicase Rep [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549128|gb|ABF39052.1| ATP-dependent DNA helicase, Rep family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 849

 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 76/734 (10%), Positives = 184/734 (25%), Gaps = 117/734 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+     T +A  E++     + G ++   P+I +           D+     L      
Sbjct: 53  SILAMTFTNKAAAEMQERVEHLVGGRTLAKPVISTFHSFCVRVLRRDIEA---LQINGKG 109

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID--IIETEE 163
            ++   +       ++ +   +K L  +       +  + I  AKN   ++D   +  + 
Sbjct: 110 YRKDFAIYDESDQ-QSLVKSAMKRLGIDDKQLTVRNVLSRISHAKN--HLLDPQEVYLQS 166

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----- 218
                                 + +    K +   L + NA       +   +       
Sbjct: 167 GDP-----------------KVERIAQIYKVYESELAKANALDFDDLLLMTNKLLKTSTE 209

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                      ++I     +      +M  +A       V    D       W     ++
Sbjct: 210 VRERYNRRFQYVLIDEYQDTNRPQYEIMRALAGT--LHNVCAVGDEDQSIYSWRGADIRN 267

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +      P+  + +L       +  ++    V      R               
Sbjct: 268 ILEFEQDF-----PEAKIVRLEQNYRSTQNILEAASAVVKNNLKRK-------------- 308

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI------ALRMSLDENKKKSALI 392
                     +   +   + V   EA +   E++ +A        +    D+  K++A++
Sbjct: 309 -------GKNLWTERMGGAKVGYYEAPDGENESLFVADYINKYLMIAHDEDDEPKRAAVL 361

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
               + +R  +  + R+GI  ++  G           + S L  I   +D +A+   +  
Sbjct: 362 YRTNSQSRLFEEAMRRYGIKYNVVGGFSFYERAEIKDMISYLKLIQNPSDSVALLRTINT 421

Query: 453 PLAKFGFPEKYL---------SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
           P    G                   +AL  +  +          LK         +    
Sbjct: 422 PTRGIGKTTVEQIERIALETNLPLWDALGHIVEQRLMQPRACAALKGFRELIQDARAMLY 481

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                +   + +  +               L              +     +   T  + 
Sbjct: 482 GKFEERLVETAQVSKPEESDAAEPEIADEDLQDNMAFDFGELEPDAEEFSPEALGTAEEA 541

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKI-------IETGSCIKANAIEWIDIITRLIDGE 616
                             + L  L  +         E      A      +++   +D  
Sbjct: 542 APEKVEGFRSPGENANVSEVLKFLIDRTGYIKQLEAEDTPESLARIENLRELVNAAMDSR 601

Query: 617 TVKPKIEK----------------SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                I                   + + ++    ++ L F  + + G+ EG++P +   
Sbjct: 602 DRGETIADFLDHAALVADTDDIEAGAQVTLMTMHAAKGLEFPLVFIVGMEEGLFPSSRT- 660

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENN------IPTIAS 713
                        L   ++   +    +         L+ +R+             + AS
Sbjct: 661 -------------LMNPDEVEEERRLCYVGMTRAMRILVLSRARYRRRYGTDMPDASTAS 707

Query: 714 RWLQRLLVLGGTDF 727
           R+L  +      D 
Sbjct: 708 RFLSEVPPQLFEDI 721


>gi|304436816|ref|ZP_07396782.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370188|gb|EFM23847.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 746

 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 63/739 (8%), Positives = 159/739 (21%), Gaps = 125/739 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            +     T +A +E+R     + G  +    L    +           +L          
Sbjct: 52  RILAITFTNKAAREMRERVDALIGDAAQDVWL---STFHSFCARFLRMELEHYGRYAKNF 108

Query: 104 ---SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
                      L   +                           +         D      
Sbjct: 109 VIYDAADSKGLLRECLKELNIDEKHTAPGAVQAHISDAKNRLLDVAAFTAQATDFFAE-- 166

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                                      +      +  +L E NA       +  +    +
Sbjct: 167 --------------------------QVAKIYALYQSKLQENNALDFDDLLMLTVELLTK 200

Query: 221 HLMKG-----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +             I++     +  A   +   +        V+   D       W    
Sbjct: 201 NEELRTKYQKKFQYILVDEYQDTNGAQYAITKLLDAEHRNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+ ++  L                                   +
Sbjct: 259 MRNIMNFEK-----DYPEATVILL---------------------EQNYRSTKNILAAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALI 392
                N    + ++         + + E   E+ EA  I   +              A++
Sbjct: 293 AVIENNLTRKKKELWTDNPTGDRITIYEGATEKNEASYIVREVERLHTMFHVKYGDIAVL 352

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R ++      G+   +   +          + + L  I+   D +++  ++  
Sbjct: 353 YRTNAQSRNIEEAFYATGVPYAMVGSVRFYDRREIKDIIAYLRVIYNPRDTLSLLRIINV 412

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P                                  L    + R+        +  ++   
Sbjct: 413 PR-------------------------------RGLGPTSIARMMETAEEYRISLFEVIT 441

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
             +   +   L   +   +              G   I +  +  +         E  K 
Sbjct: 442 DAQLLSMIPKLSTKVKLALEEFAAMVFTFMGQLGTRPIHEIVEDVIETSGYAAALEEEKK 501

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
            +    +  + L    S                 D + ++     V    +   T+ ++ 
Sbjct: 502 ED--NRDRLENLREFISVAKNFDDGAAEGENGLADFLAQIALISDVDQTEQSDGTVTLMT 559

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L F  + + G+ EG++P +                L    +   +    +    
Sbjct: 560 FHAAKGLEFPAVFMAGMEEGLFPHSRT--------------LLDDTEIEEERRTCYVGIT 605

Query: 693 GT-RHLIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
              R L  T + +         +  SR+L  +          +    G      +     
Sbjct: 606 RAERRLYLTYARQRTIYGRTEMSRPSRFLAEIPEELVEHKEADFLG-GTDLRAPSNIWSE 664

Query: 748 TTKQPHYKRPKPFPPLEAQ 766
            + +   KR    P   A+
Sbjct: 665 RSTRTERKRYMTPPQHTAE 683


>gi|291450479|ref|ZP_06589869.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291353428|gb|EFE80330.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 281

 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 36/268 (13%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S S     +  P     R I +L   P          RGTL H ++  L      + T 
Sbjct: 1    MSPSRASDFMQCPLLYRFRVIDRLPEKPSP-----AATRGTLVHAVLERLFDAPAAERTA 55

Query: 830  EINHLMKQIIDSHFEKENL--------------PPHIDIIWRHLFHKISHSFLEHEEKIQ 875
                 +          E                P      W     ++   +   E+  +
Sbjct: 56   PRATGLLPGEWERLLAERPELAELFSGEEGESTPGERLERWLGEAERLVERWFTLEDPTR 115

Query: 876  SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935
              +E     +  +  +ES G+ L G  DR+D+  +G V I DYKTG  P+     +    
Sbjct: 116  --LEPAERELFVEAELES-GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP-QYAEGALF 171

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            Q++  A  +       +  R++  L Y+   +    D +  D          E+  + L+
Sbjct: 172  QMTFYALVVWR--LKGVLPRRL-QLVYLGSGEVRSYDPVMAD---------LERVERKLL 219

Query: 996  EIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
             +   +Q   +      + S+      +
Sbjct: 220  ALWEAIQEATRTGDWRPKPSK-LCGWCD 246


>gi|103488489|ref|YP_618050.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256]
 gi|98978566|gb|ABF54717.1| ATP-dependent DNA helicase, Rep family [Sphingopyxis alaskensis
           RB2256]
          Length = 770

 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 83/764 (10%), Positives = 186/764 (24%), Gaps = 110/764 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+R     + G     +P + +   +                    
Sbjct: 70  SEILAVTFTNKAAREMRERIGRMIGDAVEGMPWLGTFHSICARM---------------- 113

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    +  +  L          W A+ LA +ID  +    
Sbjct: 114 -LRRHAELVGLQSNFTILDTDDQLRVLKQ--LIQAEGLDEKRWPARQLAGLIDKWKNRGL 170

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
              DL A   E Y         F  +        L   +    + + + +++   + L  
Sbjct: 171 TPADLDAADKEAYADG--KGQHFYALYQARLKT-LNACDFGDLLLHMLVILKTHRDVLEQ 227

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +     I++     +  +    +  +A        +   D       W      +    
Sbjct: 228 YQARFKYILVDEYQDTNASQYLWLRLLAQSRKNICCV--GDDDQSIYSWRGAEVANILRF 285

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
             +                            G     +        +          +N+
Sbjct: 286 EKDFP--------------------------GATVIRLEQNYRSTPQILAAASALIAQNS 319

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALITADRNLAR 400
           D L   +         + ++   +  EEA  I   L        N  ++A++   +   R
Sbjct: 320 DRLGKTLWTELDAGDKLRVVGVWDGPEEARRIGEELETLQHRGVNLDRTAILVRAQFQTR 379

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
             +      G+   I  G             + L  +    D +A   +V  P    G  
Sbjct: 380 EFEDRFIAIGLPYRIVGGFRFYERAEIRDALAYLRLVQSSADDLAFERIVNVPKRGLGDK 439

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                              +        ++ +    +       +     R         
Sbjct: 440 ALQ----------------RIHQFARAERAPLFHAASRITETDELTPQARRQLASFIAQM 483

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
                 + +   P +T      S    +  +D +      L+N+                
Sbjct: 484 RNWQAKVGELSHPELTQLILDESGYTAMLQADRSAEAAGRLENLSELVRAMEEY------ 537

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
                                  + ++     +     +   E + T+ I+    ++ L 
Sbjct: 538 -----------------------DSLEAFLEHVSLVMDRDNDESAETVTIMTIHAAKGLE 574

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
           FD + L G  +GV+P   A +         +    + E+    A      A     + + 
Sbjct: 575 FDHVFLAGWEDGVFPSQRAMD---------EGGTASLEEERRLAYVAITRARRRASIYHA 625

Query: 701 RSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
            + R       +I SR++  +              +     +W+ + D        +  +
Sbjct: 626 ANRRIYGQWMSSIPSRFIAEIPPDHIEMENSFGGGQSLWRANWSAQGDPFAHVAERQPSR 685

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
                 A  R  + S        P        +           
Sbjct: 686 TMTRGPAWQRAVAASNTVTRAPAPSERGPAASVGAKPRADLAIG 729


>gi|152997239|ref|YP_001342074.1| exodeoxyribonuclease V subunit gamma [Marinomonas sp. MWYL1]
 gi|150838163|gb|ABR72139.1| exodeoxyribonuclease V, gamma subunit [Marinomonas sp. MWYL1]
          Length = 1131

 Score = 94.6 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 104/926 (11%), Positives = 230/926 (24%), Gaps = 103/926 (11%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
             ++   LL   L  +   +P +        I V      Q L+    E     + +   
Sbjct: 10  LEDLAV-LLAKILAVSPPENPFDDEF-----ILVQNPGMAQWLKMFLAESHSIAAGL--- 60

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
           +  L      +  A  L      P  S   +   + RL+ +  ++L D          L 
Sbjct: 61  VFPLPSTFVWQTFAQSLDDI---PAQSEFNKPFLVWRLMRLLDSRLGDPEFQALS-WYLE 116

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG--------MWWLLAADFLK 189
              +      L  ++ADI D        W         +            W        
Sbjct: 117 EDDTQIRRFQLCSSIADIYDQYLVYRPDWIKSWEGGEAQDPKLTAIFEQQPWQAIL---- 172

Query: 190 IASKYWTERLVE-LNASSPVGYQIALMRAEAEHLMKGT-----KGPIIIAGSTGSIPATA 243
                W + + +     + + ++  L+ A  +              I I G +   P T 
Sbjct: 173 -----WRDLVADVSQRGTSLYHRGNLIEALHDKTQSSARPVGVPERIFIFGVSSLPPNTL 227

Query: 244 RLMSTVANHP--NGAIVLPGLDCHIPTAI---WNTITEKSTNITSSNTTYSTHPQYSLAK 298
             +  +A     +  + L          +        E          +  T    +   
Sbjct: 228 ESLRVLAASGWIDVHLFLQNPCRFYWGDVVDKHYLGREIKRQTLKPGLSTDTLHLDANPL 287

Query: 299 LLDFLDIKREDVKRLGNVSNE----------------MYGRSMVISKSFLPPDTSDMRNT 342
           L  +  + R+ + +L  +++                 +      +          +    
Sbjct: 288 LASWGRLGRDYIAQLQEMADNELVVFEDYRTEQSTGLLQWIQQDVLTLENHGSQQERDAK 347

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    I      + +    +   E   +   L    + +     K   ++  D N 
Sbjct: 348 IRDASYRHPIAADDQSIRVHLCHSPLREVEVLHDQLLQMFESDPSLTPKDIIVMLPDVNT 407

Query: 399 ARRVK---------LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
                             R  I   +                 LL           + ++
Sbjct: 408 YSPFVKAVFGSVKGSAQGRKHIPFALIDQSGGMENPIVDAYLYLLGLGESRFTLSELISV 467

Query: 450 VKHP--LAKFGFPEKYLSRAKNALELVALRGN------KNSYDIMDLKSLVLDRIATQKN 501
           ++ P  LA+F      L R +     V +R        +     M      L+ +     
Sbjct: 468 LEVPAVLARFELTADELERIRQWSTEVGIRWGLDGKTAQQHDLPMQESHTWLNGVRRMLL 527

Query: 502 NTHVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
              + H               L      +    LV     +     +L+  +W       
Sbjct: 528 GYAMGHDHIWEGTLSYGDVEGLEASVAGKLAEFLVAINDAQAKLMESLAPKEWISTLYYL 587

Query: 561 LQNVCL-DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
            +   L DE    P L  ++             +       +      +++ L+      
Sbjct: 588 AERFFLVDEDDAFPALLSKQLDALTLQWQQAHFDA----PLDQQVLRQLLSPLLQESQGG 643

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
            +      +     +  R + F  + + GLNEG +P++ A   F   V Q     ++  +
Sbjct: 644 QRFLAG-RVNFCTLMPMRSVPFKVICVLGLNEGDYPRSVAPMGFDLMVGQYRSGDRSRRE 702

Query: 680 YIGQAAHDFEMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                    E     R     +   R   +N     S  +  LL   G        +   
Sbjct: 703 DDKY--LFLEALMSARDCFYISYVGRSIQDNSEKNPSILVSELLEYIGQSCVFEGDQALT 760

Query: 737 CYLDWTRKLDYTTKQPHYKR-------------PKPFPPLEAQPRTYSFSEIKQLINDPY 783
                   L+    +   +               +     + +  +Y    +  L++ P 
Sbjct: 761 PDDAQKALLEKLILEHPLQPFNAAYYFQPQGSSHESTDQFDKRLYSYDEQWLPALLSVPV 820

Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
              A+    L+ +   + D    +      +      ++R+           K+      
Sbjct: 821 DEEAQAFSPLEGLEQPRIDLALDELSRFIGHPTRYFTQRRLKAYLSLQEEEEKEDEPFAL 880

Query: 844 EKENLPPHIDIIWRHLFHKISHSFLE 869
           +        + + + +       F+E
Sbjct: 881 DGLAGYQLREGLLQAMLKGDEDQFVE 906


>gi|119716861|ref|YP_923826.1| hypothetical protein Noca_2636 [Nocardioides sp. JS614]
 gi|119537522|gb|ABL82139.1| conserved hypothetical protein [Nocardioides sp. JS614]
          Length = 299

 Score = 94.6 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 78/261 (29%), Gaps = 26/261 (9%)

Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
           T  +    R              S S     ++ P     R + +L              
Sbjct: 3   TPSESPAIRVSTPVDGVDVLGALSPSRAGDFMSCPLLYRFRTVDRLPEPFSPD-----AV 57

Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL----------PPHIDIIWR 857
           RGT+ H ++ +L        TP+    M +       +                    W 
Sbjct: 58  RGTVVHKVLEDLFDLPAGDRTPDRAQAMLEPAWERLVEAAPELSELFPVDEDGAQVAAWL 117

Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
                +   +   E+  +  +E     +  +  ++S  + L GF DRID+   G + + D
Sbjct: 118 ASCRAVLERYFTLEDPRR--LEPAERELYVEALLDSR-LLLRGFVDRIDVAPDGAIRVVD 174

Query: 918 YKTGDNPKKETAQKLIDP-QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
           YK+G +P      +     Q+   A  +             A L  I L     +  + +
Sbjct: 175 YKSGRSPS--EMFEAKALFQMKFYALVIWR-----TRGVVPAMLQLIYLGNGELLRYVPD 227

Query: 977 DKKKYSADELSEKSLKNLIEI 997
           ++   + +   E   + +   
Sbjct: 228 ERDLLATERKIEAIWQAIRRA 248


>gi|89056557|ref|YP_512008.1| UvrD/REP helicase [Jannaschia sp. CCS1]
 gi|88866106|gb|ABD56983.1| UvrD/REP helicase [Jannaschia sp. CCS1]
          Length = 1120

 Score = 94.6 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 73/747 (9%), Positives = 178/747 (23%), Gaps = 68/747 (9%)

Query: 212  IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
                           +     A   G+     R +  V +         G D      + 
Sbjct: 391  DEAQDTAPRQWDIVQRLAEDFAAGEGARTDVQRTIFVVGDKKQSIYSFQGADPSEFDRMR 450

Query: 272  NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                 +   I +     +    +  A  +  L  +         + + +  ++   +K  
Sbjct: 451  AHFKARLDEIDAPFQDAALIHSFRSAAPILSLVDRVAAKLGAPGLGDHIEHKAFFDAKPG 510

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR----------MS 381
                   +      +    N  +         +   +  A  I   +             
Sbjct: 511  RVDLWPAIEQVKGGDKPAWNDPQDLVSEDHHSSVLAQTVAAQIGAMVAAPPMIDVEGKRR 570

Query: 382  LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                     L+ +   L  ++  EL R  + +       L++ L    L +L   +    
Sbjct: 571  ALTAGDILILVRSRSPLFHKIIAELKRADLPVAGVDRSQLTSPLAVKDLMALCRFLATPE 630

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
            D +++A +++ PL      + Y                ++     +    +L  +    +
Sbjct: 631  DDLSLACVLRSPLCGLSEAQLYDLAHGR--PGFLWSAMRDRISDFEDAHAILKDLRDSAD 688

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                     R          L+     +    +        +       S          
Sbjct: 689  FLKPYDLLERALIRHDGRRRLIARLGPEAEDAVDAMLAQALAYEATEVPS-----LTGFA 743

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
              +   + +   +L   E       +    +     ++A  +   D   +   G +V   
Sbjct: 744  GWLDSGDVQVKRDLSQAEG-----QIRVMTVHGAKGLEAPVVILPDCAQKQGRGSSVSLL 798

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                + L         +                             +    +LK   +  
Sbjct: 799  QPDGAPLIWAPGKGDEV---------------------------DAVTDAADLKKQREAE 831

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                  +         +   +  +      AS +      + G +      +     L+ 
Sbjct: 832  EANRLLYVALTRAETWLIVAASGQLGKGDDASWYKIVADAVAGMEAAALTVEG----LEG 887

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF-K 800
            T     T      +RP       A    ++ +       D  A     +     +P    
Sbjct: 888  TGLRLQTGDWAEGERPAHATKTRATLPDWATAPAPAPEKDKPARRPSDLGGAKALPGMGD 947

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
            +      RGT+ H ++  L +  + +            ++S    E L P ++       
Sbjct: 948  ESATAMQRGTITHLLLEHLPR--LPQAAWPAAAPGIAALESDLSPEALAPMLEE------ 999

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
               +   L          +     +       ++   + G  DR+ +  +  V   D+KT
Sbjct: 1000 ---ATRVLTAPHLTHVFTQDTLAEVEIAGHSPTLNADMIGIIDRLIVTPT-RVTAVDFKT 1055

Query: 921  GD--NPKKETAQKLIDPQLSLEAAALK 945
                    E     +  Q+   A  L+
Sbjct: 1056 NATVPTAPEDTPDGLLRQMGAYAELLQ 1082


>gi|296268638|ref|YP_003651270.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833]
 gi|296091425|gb|ADG87377.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833]
          Length = 786

 Score = 94.6 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 93/727 (12%), Positives = 201/727 (27%), Gaps = 94/727 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           A +     T +A +E+R     + G +S ++  + +           +        P   
Sbjct: 94  AEILAITFTNKAAREMRDRVDRLVGPRSQLM-WVMTFHSACVRILRREAKRLG--YPTNF 150

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            I    +  RL+ +   +L    K   P S              A  ++   + +   E 
Sbjct: 151 TIYDQADAQRLMAMVCRELDLDPKRYPPRS-------------FAAQVSAFKNELIDHET 197

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS------PVGYQIALMRAE 218
                                  L  A + +  RL E  A               L    
Sbjct: 198 AASRAQT--------HLERT---LAEAYRIYQTRLTEAGAMDFDDLIMQTVALFQLFPEV 246

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
           AEH  +     +++     +  A   L+  +   P    V           +        
Sbjct: 247 AEHWRR-RFRHVMVDEYQDTNHAQYVLVRELVGRPEVRTV--------DGDVVREGVADP 297

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
             +        +   +  A + + L+ +R+       +  + Y  +  I  +    +   
Sbjct: 298 AELVVVGDADQSIYAFRGATIRNILEFERDFPDARTILLEQNYRSTQTILDA---ANAVI 354

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395
            RN       + + Q     +    ADNE +EA+ +A  +    DE        A+    
Sbjct: 355 SRNQGRKPKNLWSDQGPGPKIVGYVADNEHDEALFVAQEVDRLADEEGIKPGDVAVFYRT 414

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R  +   +R G+   I  G+          L + L  +   ND +++  ++  P  
Sbjct: 415 NAASRVFEEVFSRTGLPYRIVGGVRFFDRKEVKDLLAYLRILVNPNDTVSLRRILNVPKR 474

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G       RA+  +E  A R     ++ +              N              
Sbjct: 475 GIGE------RAEAMIEAFAARERIPFWEGLKRAQEAPGLATRSLNAIRDFVALIEDLRA 528

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            +     LV+ +       V  + + +    N  + +  +L     +    +        
Sbjct: 529 RELPLRDLVEEVANATGYRVELEESDDPQDANR-LDNIKELVSMAAEYEAANPDGG---- 583

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                                      + +++ ++ + D + +    +    + ++    
Sbjct: 584 --------------------------LVGFLEQVSLVSDADEIPDGEDHGGVVTLMTLHT 617

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + L G+ +GV+     ++    + ++ +  L        +    F  A    
Sbjct: 618 AKGLEFPVVFLTGMEDGVF--PHQRSMTDPKELEEERRLAYVGITRAKQRLYFSRA---- 671

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                RS         ASR+L  +         D  K       +        T  P   
Sbjct: 672 ---VVRSAWGAPSFNPASRFLDEVPAELIEWRTDPGKTPWTAATERREPGRSRTAGPARP 728

Query: 756 RPKPFPP 762
             +P P 
Sbjct: 729 GARPIPA 735


>gi|291295604|ref|YP_003507002.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
 gi|290470563|gb|ADD27982.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
          Length = 706

 Score = 94.6 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 82/735 (11%), Positives = 185/735 (25%), Gaps = 137/735 (18%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           A +     T +A  E++    ++ G+ +          D+    F A  +          
Sbjct: 53  AEILAVTFTNKAAGEMKERLEKMVGRPAR---------DLWVSTFHAAAVRILRTYGEYV 103

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++    +        +    ++K++  E  L     P  A+         ID I+    
Sbjct: 104 GLRPGFVIYD-----EDDQNTLLKEVLKELELEAKPGPFRAM---------IDRIKNRGA 149

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
              +      +  G     AA       + +   L    A       +  +    +H   
Sbjct: 150 GLAEYMREAPDFIGGVPKDAAA---EVYRKYQSGLRMQGALDFNDLLLLTIELFEQHPEV 206

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I +     + P   +L   +A      +V+   D       + +    + 
Sbjct: 207 LHKVQQRARFIHVDEYQDTNPVQYKLTRLLAGERPNLMVV--GDPDQSIYGFRSADINNI 264

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
              +       +P   + +L                            S      +    
Sbjct: 265 LDFTK-----DYPGARVIRL---------------------EENYRSSSSILRVANAVIE 298

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
           +N   LE  +   +     V L  A N REEA  +A  +    +   ++ A++      +
Sbjct: 299 KNALRLEKVLRPTRPGGEPVRLYRAPNAREEAAFVAREIVKLGN--FQQIAVLYRTNAQS 356

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           R ++  L R  + + +   +          L +         D + +  +V  P      
Sbjct: 357 RLLEEHLRRANVPVRLVGAVGFFERREIKDLLAYGRVAVNPADSINLRRIVNTP------ 410

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
           P    +   + L   A +     ++   +   V+ R    +    +       + E    
Sbjct: 411 PRGIGATTVSRLVEHAQKTGTTVFEAFRVAEQVISRPQQVQAFVRLLDELIEAAFESGPT 470

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
           A      +L+        K   +      ++ +  +      +         L ++    
Sbjct: 471 A--FFQRVLEQTGFREALKQEPDGEDRLQNVEELLRAAQDWEEEEGGSLSDFLDSV---- 524

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                                           L            +  + ++    ++ L
Sbjct: 525 -------------------------------ALTAKAEEPQGDAPAEAVTLMTLHNAKGL 553

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLI 698
            F T+ L GL E + P   +              L   E    +    +         L 
Sbjct: 554 EFPTVFLVGLEENLLPHRNS--------------LHRLEDLEEERRLFYVGITRAQERLY 599

Query: 699 YTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
            + +           T  SR+L+ +      +                   D   +    
Sbjct: 600 LSYAEERETYGKREYTRPSRFLEDIPQDLLKEVG--------------AFGDSEVRVLPQ 645

Query: 755 KRPKPFPPLEAQPRT 769
            RP+P P  +     
Sbjct: 646 ARPEPKPRTQLAEFK 660


>gi|329121402|ref|ZP_08250027.1| putative ATP-dependent deoxyribonuclease subunit B [Dialister
            micraerophilus DSM 19965]
 gi|327469692|gb|EGF15159.1| putative ATP-dependent deoxyribonuclease subunit B [Dialister
            micraerophilus DSM 19965]
          Length = 1138

 Score = 94.6 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------I 820
            S S++++  + PY  +  R LKL             D G   H+ +              
Sbjct: 775  SISQLEEYRSCPYKYFLNRGLKLS--DRQDGRIQNIDFGNYLHSGLKRFGNLLSSMNKTW 832

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI-----SHSFLEHEEKIQ 875
            K   +      ++ +  II        L       + H    +        F        
Sbjct: 833  KDLSDDEIDAFSNQISSIITPLVAHGTLTADATNAYTHRLLNMTFKKSIKQFKNW--SEN 890

Query: 876  SSIEKIFVNIPAKMAIESIG---IHLTGFADRID----LLKSGFVDITDYKTG-DNPKKE 927
            S  +   +    K+ I++       L G  DRID          + + DYKTG  +   +
Sbjct: 891  SDFKTTDLEREFKINIKADDKDTFTLRGKIDRIDSYTTETSQCALAVCDYKTGIQSIDLQ 950

Query: 928  TAQKLIDPQLSLEAA-ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE 985
            +    I  QL       +K      I       L YI L    +           + +E
Sbjct: 951  SIISGIKLQLVTYMLAMIKENPEKNI---IPTALMYIYLSNDAENFKNVPPDGIPAKEE 1006


>gi|325963968|ref|YP_004241874.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470055|gb|ADX73740.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 1201

 Score = 94.6 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 83/833 (9%), Positives = 195/833 (23%), Gaps = 99/833 (11%)

Query: 63  EFIEITGKKSTILPIIKSLGDVVEE-KFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
            F +       + P + +             L L    +  +    +  +LA  ++   +
Sbjct: 136 LFPDGLPGSDALEPKVSTYHSFASGIVSDYGLRLGVERDVVLLGGAQAWQLASEVVEAYD 195

Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI-------IETEEKKWEDLHALK- 173
                 +                 I LA   A+ +         +      +E L  L  
Sbjct: 196 GEYGHFRAAKSTLVK-------AVIQLAGECAEHLQEPEDVEAWLMARLSDFEALPYLAD 248

Query: 174 ----NEKYGMWWL---LAADFLKIASKYWTERLVELNASSPVGYQIALMR-----AEAEH 221
                 +              +      +        A           R       A  
Sbjct: 249 KKKNPPQAAAELAGMLRTRASVADMVGRYASAKRSRGALDFGDLVALAARVAQEVPLAAQ 308

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
           + +     +++     +  A   L S +     G  V    D +     +   +      
Sbjct: 309 MERQRYKVVLLDEFQDTSHAQLVLFSRLFG--GGHAVTAVGDPNQSIYGFRGASAGQLFH 366

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                          +      ++                 R+     +     +  +  
Sbjct: 367 FVREFPVWNG-SAGKSDPSQGPEVDSGSWSPAPTSYLTTAWRNGRSILAAANVMSEALGR 425

Query: 342 TDILE--------------NKIPNIQKCFSDVALIEADNEREEAISIAIA---------- 377
                                 P+       V L    ++ +EA +IA            
Sbjct: 426 AAAQRGPAGGGGPAAPEVPPLQPSPHAAAGSVVLGRFGSDVDEAGAIAEDVLKYRMTDFE 485

Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
           L+          A++   R     ++ +L   GI  +I     L  T     L + L  +
Sbjct: 486 LKPDGSRVPPAIAVLCRRRAQMEPIRRQLEARGIAYEIVGLGGLLDTPEIVDLVATLRVL 545

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSR-----AKNALELVALRGNKNSYDIMDLKSLV 492
                  A+  L+     + G  +    R           +    G   + D   +    
Sbjct: 546 ADPGRSDALMRLLAGARWRIGPADLMALRDWSSQLARRRGVSGPAGGHLTEDGPTVLEGD 605

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
           L   A+          +  +S   + L     + +L+    L   +         L + +
Sbjct: 606 LTDGASLVEALDWLPREGWISANGRSLTPAARERMLRLSAELRQLRGYLGDDLTTL-LGE 664

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
             +  +  ++                +  +  ++ F +  +    +    + W++     
Sbjct: 665 VERAMLLDIEVAARPGISIHQARRNLDAFQDAAAGFLRTSQRVDILAF--LSWLEAAAAE 722

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP-----FLSRV 667
            +G    P       + +L    S+ L +D + + GLN   +P +           L   
Sbjct: 723 ENGLEAPPSEVSREAVQLLTVHASKGLEWDVVFVPGLNAKDFPSDRDSRWSSGSAALPWP 782

Query: 668 MQSDLNLKTAEK------------------------YIGQAAHDFEMANGTRHLIYTRSL 703
           ++ D                                 + +    +      +++++  S 
Sbjct: 783 LRGDRADLPQWDLDQPDQKGWLDAEKDFKADALAHGELEERRLAYVAYTRAKYVLWASSA 842

Query: 704 RENN---IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
                       S +L  L VL G    +  +            L  T+          +
Sbjct: 843 AWVGSRSGRAEMSPFLAELEVLAGPLQGEAPRATIHPRSVEEASLPETSPLTLDAEVAGW 902

Query: 761 PPLEAQPRTYSFS----EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
           P    +      +     +     +     + R+L     P   +  D    G
Sbjct: 903 PYDPLEGPVDPRTGERLRLAAGRRNAMETASARVLAALAAPQHGEARDLRGVG 955



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 70/665 (10%), Positives = 155/665 (23%), Gaps = 56/665 (8%)

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                I   D+  L + S+++  R  V   +            +       ++ +    + 
Sbjct: 561  ARWRIGPADLMALRDWSSQLARRRGVSGPAGGHLTEDGPTVLEGDLTDGASLVEALDWLP 620

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
                 +    +++ A   RM     + +        +L   +        ++I+++A   
Sbjct: 621  REGWISANGRSLTPAARERMLRLSAELRQLRGYLGDDLTTLLGEVERAMLLDIEVAARPG 680

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            +S       L +  +A            ++                A  A E        
Sbjct: 681  ISIHQARRNLDAFQDAAAGFLRTSQRVDILAF---------LSWLEAAAAEENGLEAPPS 731

Query: 481  NSYD--IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                  +  L       +          + +   S+ D   +                  
Sbjct: 732  EVSREAVQLLTVHASKGLEWDVVFVPGLNAKDFPSDRDSRWSSGSAALPWPLRGDRADLP 791

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                         D  K            E R+L  + +      L +  +  + + S  
Sbjct: 792  QWDLDQPDQKGWLDAEKDFKADALAHGELEERRLAYVAYTRAKYVLWASSAAWVGSRSGR 851

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
               +    ++       +   P+                     ++    L E       
Sbjct: 852  AEMSPFLAELEVLAGPLQGEAPRATIHPR---------------SVEEASLPETSPLTLD 896

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
            A+                  + +  AA            +        +      R +  
Sbjct: 897  AEVAGWPYDPLEGPVDPRTGERLRLAAGRRNAMETASARVLAALAAPQHGEARDLRGVGP 956

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                            G   +      +         R      +       S S + +L
Sbjct: 957  AGGTQPGARNVPAPDAGLPGVSSGWAREAALLLERRARRSSAQDVHLPTH-ISASTLVEL 1015

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
              DP AV    + +L      +        GT FH  + E        +  +        
Sbjct: 1016 DEDPSAV----LWRLRRPVPREPGMSARK-GTAFHAWVEEYFGTAGMLDLGDAPGS-DDH 1069

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
            ID+ ++                  +  +F       +S     F+ +P +  +    + +
Sbjct: 1070 IDAAYD---------------LDAMVATFKASPWAHRS---PAFIEVPVETRV--GDVVV 1109

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
             G  D +     G  D+ D+KTG  P      +    QL+    A        +    V 
Sbjct: 1110 RGRIDAVFQDADGRWDLVDWKTGRRPSG-ERLRTRAVQLAAYRLAWSR--LKGVPLEDVR 1166

Query: 959  NLFYI 963
              F+ 
Sbjct: 1167 AAFFY 1171


>gi|330503686|ref|YP_004380555.1| DNA helicase/exodeoxyribonuclease V subunit gamma [Pseudomonas
           mendocina NK-01]
 gi|328917972|gb|AEB58803.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Pseudomonas
           mendocina NK-01]
          Length = 1138

 Score = 94.2 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 119/957 (12%), Positives = 246/957 (25%), Gaps = 92/957 (9%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG-KKSTILPIIKSLGDV 84
           L    V+  R  PL P  L +  + V +    Q L+    E  G   +  L +      +
Sbjct: 22  LRTLAVQWMRRYPLRP--LENEVLLVQSNGIAQWLKLALAERDGCGIAAALDVDLPARFL 79

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
            +         +     P+        L RL+     +        +    L+       
Sbjct: 80  WQAYRNVLGKDAIPQQSPLDKAPLTWRLMRLLPGLLAEEAFAPLRRF----LADDQDLRK 135

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---GMWWLLAADFLKIASKYWTERLVE 201
              LA+ LAD+ D  +     W    A  +++         +  D  +     W   L +
Sbjct: 136 RHQLAERLADLFDQYQVYRADWLADWAAAHDRLRTSRGGERILDDDSRWQPALWRALLAD 195

Query: 202 LNASSPVGYQI----ALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNG 255
           +        +       +    E           I + G +         ++ +A     
Sbjct: 196 VGEQHLAESRAGVHPRFVARMGELDAAPPGLPRRITVFGISSLPAQVLEALAAMARFSQV 255

Query: 256 AIVLPGLDCHIPTAI-----------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
            + +     H    I                +   +            Q+    L  +  
Sbjct: 256 MLYVHNPCQHHWGDIVEDKDLLRHEYRRQQRKGKPSAQIGLFEQEDMHQHGQPLLAAWGK 315

Query: 305 IKREDVKRLGNVSNEMYGRSMVIS------------KSFLPPDTSDMRNTDILENKIPNI 352
             R+ +  L         R                    L  D  D+R      +  P +
Sbjct: 316 QGRDYINLLDQYDEPQRYREQFERIDLFSPASECCLLGQLQNDILDLRPLADTRSTWPPV 375

Query: 353 QKCFS-DVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL- 406
                  +    A + + E   +   L  S  E      +   ++  D N        + 
Sbjct: 376 DPARDHSLRFHVAHSAQREVEVLHDQLLASFSEDSTLRPRDVIVMVPDVNAYAPHIQAVF 435

Query: 407 ------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF- 459
                     I   ++             L  LL           I  L+     +  F 
Sbjct: 436 GQFASDDPRFIPFTLADQGLRGKEPMVIALEHLLRLPDSRFSVSEILDLLDVAALRERFA 495

Query: 460 -PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSR 511
             E  L   +  LE   +R   ++     L       ++     +        V    + 
Sbjct: 496 IAEDQLPTLRRWLEGAGVRWGLDASQRQSLGLGENLEQNTWRFGLRRMLLGYAVGKADAF 555

Query: 512 LSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
              E  +    L    I      L T   +        +   W +   + L    L ++ 
Sbjct: 556 AGIEPYDEIGGLDAALIGPVTRLLETLDQHLQLMREPTTPVQWGERLRSLLDGFFLAQND 615

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
           +   L   +    L +                    +     +D   +  +    + +  
Sbjct: 616 REEVL-TTQLLDALDAWLELCEAATLDEALTLPVVREAWLGGLDQGRLSQRFLAGA-VNF 673

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
              +  R + F  + L G+N+G +P++ A   F           ++  +       +  +
Sbjct: 674 CTLMPMRAIPFRQVCLLGMNDGDYPRSQAPLDFDLMAGDYRPGDRSRREDDRYLLLEALL 733

Query: 691 ANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF--------------FDNLKKR 734
           A     L  +   R   +N     S  + +L     + +                 L+  
Sbjct: 734 AAR-DRLYISWVGRSIRDNSERPPSVLVGQLRDHLASAWTLAGGGDLLHGLTTEHPLQPF 792

Query: 735 GQCYLDWTRKLDYTTKQPHYKRPK--------PFPPLEAQPRTYSFSEIKQLINDPYAVY 786
            + Y D   +L    ++                  P   + R  +   ++  + DP   +
Sbjct: 793 SRRYFDGEAQLFSYAREWAALHGHALAGENFVAPLPAWEEGRQLTPELLQSFLRDPVKCF 852

Query: 787 ARRILK--LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
             R LK  LD     + D +      L    + E + K       + +  ++   D    
Sbjct: 853 FTRRLKVFLDEDEQAQLDSEPFALDGLQRYQLQETLLKAAVAGDVDSDDALRAAADRLQR 912

Query: 845 KENLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
              LP       +R+   +   + L   + +        V  P ++   + G+ L G
Sbjct: 913 SGVLPLAGFGEQYRNALLEPLPAQLRRYQGLCLCW-PTPVESPQRLLFSAAGVDLDG 968


>gi|325676354|ref|ZP_08156033.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
 gi|325552915|gb|EGD22598.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
          Length = 824

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 84/717 (11%), Positives = 194/717 (27%), Gaps = 86/717 (11%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +        + P     +     T +A  E+R    ++ G ++  +  + +  
Sbjct: 60  TAVLTRRIAYLLAERGVMP---GQILAITFTNKAAAEMRERVAQLVGPRANSM-WVSTFH 115

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                   A   L + LN   S                  + D        + +S  +  
Sbjct: 116 SSCVRILRAQAGLLHGLNSNFS------------------IYDADDSRRLLTMISKDLEI 157

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
               + A+ LA  I  ++ E    E+  A  +             +     ++ +RL   
Sbjct: 158 DTKRYSARLLATKISNLKNELIDPEEAAADADRDSND----LDKLVARVYAHYQQRLRAA 213

Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHP---- 253
           NA          +     +       +     +++     +  A   L+  +        
Sbjct: 214 NALDFDDLIGETVGLLQANPQVAEYYRRRFRHVLVDEYQDTNHAQYVLVRELVGEESDDP 273

Query: 254 ---NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                  +    D       +   T ++            +P      L       +  +
Sbjct: 274 YAVPPGELCVVGDADQSIYAFRGATIRNIEEFE-----RDYPDARTILLEQNYRSTQNIL 328

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
               +V +   GR                      E ++         +    ADNE +E
Sbjct: 329 SAANSVISRNTGRR---------------------EKRLWTDSGEGELITGYVADNEHDE 367

Query: 371 AISIA---IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
           A  +A     L  + +    + A+     N +R ++    R GI   +  G         
Sbjct: 368 AQFVASEIDRLVDAGETKFGEVAVFYRTNNSSRALEEIFIRLGIPYKVVGGTRFYERKEV 427

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             + + L  +   +D +++  ++  P    G   +         + V       +     
Sbjct: 428 RDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVSVYAEQKGVGFAEALRAAGEGS 487

Query: 488 ---LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              L +     IA+              ++ D      + + +   +      +T     
Sbjct: 488 VPLLNTRSQKAIASFLELLDGLRALMVSTDADGNDLTDIGEVVEGVLD-----RTGYRRE 542

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               S            + V +               +  ++    + + G     +   
Sbjct: 543 LEVSSDPQDGARLDNLNELVSVAREFSSDARNAAAFAEENAAEGDVVEDEGQPDPGSLAA 602

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
           +++ ++ + D + V    E    + ++    ++ L F  + + G  +G +P   A     
Sbjct: 603 FLERVSLVADSDQV--PDEGEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPA 660

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
               +  L    A   I +A H   +          RS     +    SR+LQ +  
Sbjct: 661 ELSEERRL----AYVGITRARHRLYLTRA-----IVRSAWGQPVTNPESRFLQEIPA 708


>gi|226356134|ref|YP_002785874.1| DNA helicase [Deinococcus deserti VCD115]
 gi|226318124|gb|ACO46120.1| putative DNA helicase UvrD [Deinococcus deserti VCD115]
          Length = 744

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 74/730 (10%), Positives = 172/730 (23%), Gaps = 117/730 (16%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
               +     T +A  E+R    +   + +  L  + +          A           
Sbjct: 59  DPGEILAVTFTNKAAAEMRER-AQHLVEGADRL-WMSTFHSAGVRILRAYGEHI------ 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
              ++R   +        + L +++  +    P + P            L  IID  ++ 
Sbjct: 111 --GLKRGFVIYDDDDQ-SDILKEVMGSIPGIGPETSPRV----------LRGIIDRAKSN 157

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-- 220
                DL               A     A + +  R    NA          +R   E  
Sbjct: 158 LITPGDLGRSGEPYISGLPREVAA---EAYRRYEARKRSQNAIDFGDLITETVRLFHEVP 214

Query: 221 ---HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
              + ++     I +     +  A   L   +A+     +V+   D       +     +
Sbjct: 215 AVLNAVQNRARFIHVDEYQDTNKAQYELTRLLASRDRNLLVV--GDPDQSIYKFRGADIQ 272

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +                                  +       ++     +  
Sbjct: 273 NILDFQKDYPD--------------------------AKVYMLEHNYRSSARVLNLANKL 306

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITAD 395
              NT+ L+  +  +++    V    A + R E   +A  L     E +K    A++   
Sbjct: 307 IENNTERLDKTLKPVKEEGHPVMFHRAMDHRGEGEFVAEWLTRMRGEGRKFADMAILYRT 366

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L R  I   I  G+          + +        +D +A+  ++  P  
Sbjct: 367 NAQSRVIEESLRRVQIPAKIVGGVGFYDRREIRDILAYARLAINPSDDVALRRIIGRPKR 426

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G            L                                      +  +  
Sbjct: 427 GIGDTALEKLMEWARLNET--------------------------------SLLTACANA 454

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            +   +            L+    +            +       L  +  +       +
Sbjct: 455 SERNILDRGAQKPVDFAELMQAMADAADNYEPAPFLRYVIENSGYLDLLRQEGQEGQVRM 514

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              EE    +  +S+  E       +    +  +  +      + K      + ++    
Sbjct: 515 ENLEELVNAAEEWSQTNEGTIADFLDDAALLSSVDDM--RTRKENKDVPEDAVTLMTLHN 572

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + + G  EG+ P   A              L  A     +    +       
Sbjct: 573 AKGLEFPVVFIVGTEEGLLPSKGA--------------LVEAGGIEEERRLFYVGITRAM 618

Query: 696 HLIYTRSLRENNI-----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
             ++  + +             SR+L+ +        F+ +   GQ              
Sbjct: 619 ERLFLTAAQNRMQYGKTNAAEDSRFLEEI-----EGGFETIDPYGQVIEYRATTWKQYRP 673

Query: 751 QPHYKRPKPF 760
                     
Sbjct: 674 TVPAAPSAVK 683


>gi|167034115|ref|YP_001669346.1| UvrD/REP helicase [Pseudomonas putida GB-1]
 gi|166860603|gb|ABY99010.1| UvrD/REP helicase [Pseudomonas putida GB-1]
          Length = 1061

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 103/917 (11%), Positives = 240/917 (26%), Gaps = 71/917 (7%)

Query: 64   FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123
            F     +         +  D+  E       +   L    S ++       L+  ++ +L
Sbjct: 177  FAARNAQDLLAHFPSMTSSDLDAELLRTLPDVLALLQDANSKVKLTATYITLLKDFQREL 236

Query: 124  PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183
                      + L+     A    L   +A + + ++   +         +     +   
Sbjct: 237  QQGNARWSDWAKLAKTAPEAKLTPL---VAGVTERVQRYAEHPR-----LHADLREYLDQ 288

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL----MKGTKGPIIIAGSTGSI 239
              +    A + ++   +EL        + AL+R          ++     +++     + 
Sbjct: 289  IFNLAIDALQLYSRNKIELGVLDFADQEHALLRLLDNPAVIEVLEQELDLVMVDEFQDTS 348

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            P    +   +A       V    D       +                           +
Sbjct: 349  PMQLAIFLKLARIAKR--VYWVGDIKQAIYGFRGSDCALMQAILGALPGMGG-------V 399

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
             + L         L  ++NE++ ++   S S      +  R   +      N     S+ 
Sbjct: 400  KEVLPKSWRSRPELVELTNEVFTQAFSNSLSADEVRLTPTRQDPLGGPAFANWILDGSNA 459

Query: 360  ALIEADNEREEAISIAIA-------LRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
                          +           + + D       ++    +   +V   L   G+ 
Sbjct: 460  EQQTCALAEGIGQLLESRYQVFDKTTQQARDLQAGDITVLCYSHSNVAKVAAALAAAGLP 519

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
               +A   L  T  +++  + L  +    D +A A +V          E     A+    
Sbjct: 520  -CSTAQPGLLATPEATLALACLRRLNDPTDTLATAQIVS----MTSAEEPESWVAERLHY 574

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
            L A        +           +A            + +    + +A   +   +   +
Sbjct: 575  LHAGHPQGQWREQTVDAHAAHPLVAELARLRADLPLLTPVEALQRLIAECDLARCVTGWS 634

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE-EGKTLSSLFSKI 591
               T    +       ++ +  +      +N           LW  +  G    +L +  
Sbjct: 635  --TTPAQAQKRLANLDALLELAQRYQDLCRNGLGAASISGLVLWLGQTAGAGNDALATPA 692

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            ++    +  +A + ++    ++       +        +    +S L   D L    +  
Sbjct: 693  LDAVRVMTHHASKGLEWPVVILMDLA---RDVGERLWSVSAQSDSALDPNDPLRDRFIRY 749

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKT--AEKYIGQAAHDFEMANGTRH-LIYTRSLRENNI 708
              WP    KN  L+  +      K    E         +      R  L+  RS R    
Sbjct: 750  WPWPLGKQKNVPLADTIGKTPAAKACRDEAVEEAKRLLYVSMTRARDFLVIARSSRRLTG 809

Query: 709  PTIAS---RWLQRLLVLGGTDFFDNLKKRGQCYL-----DWTRKLDYTTKQPHYKRPKPF 760
            P +      WL                 R +                T +   +  P   
Sbjct: 810  PWLDCVQAPWLTTEAGTHELQLKSGTTVRVEHRTLGAGSAPVIATATTNQLHWFASPDSV 869

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
             P        S ++   L        A+   ++      + +PD +  GT  H  +    
Sbjct: 870  TPRLPLGVQPSATQASALAG------AQETCRIGSRITLQGNPDMSAVGTAIHASLGLSF 923

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
                   + +  + + Q          L     +  R +  +   +            + 
Sbjct: 924  SDPERPISQDEVNRLLQ---------GLDVLEHVDARQVLAQ-VTALHAWIASRWPHADA 973

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI--DPQLS 938
            +    P +  +++  + L G  D +     G   + D+K+   P+ +  +       QL 
Sbjct: 974  VA-EYPVQQLLDAGQV-LDGRIDLLLATPEG-WVLIDHKSNPAPEAQWQRLAATHAGQLQ 1030

Query: 939  LEAAALKAGSFSQIDCR 955
              A A++A S   +   
Sbjct: 1031 AYAKAVEAASGKPVTEA 1047


>gi|83313261|ref|YP_423525.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum
            AMB-1]
 gi|82948102|dbj|BAE52966.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum
            AMB-1]
          Length = 1154

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 83/838 (9%), Positives = 189/838 (22%), Gaps = 91/838 (10%)

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS-PVGYQIA 213
            ++   E   +  E L A +  +     L     L  + +        ++     +G +  
Sbjct: 324  LLAEAERLYRLTERLRAARIAEATGALLTLGGALLASYRRAKTHRALMDYDDLILGARDL 383

Query: 214  LMRAEAEHL----MKGTKGPIIIAGSTGSIPATARLMSTV--------ANHPNGAIVLPG 261
            L R          + G    ++I  +  + P    ++  +                V   
Sbjct: 384  LARPGVAPWVLYKLDGGIDHVLIDEAQDTNPDQWAVVEKLTEEFFAGRGARETLRTVFAV 443

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS----------LAKLLDFLDIKREDVK 311
             D       +     +                                   L+       
Sbjct: 444  GDAKQSIYSFQRADPREFERMREAFATHVPAAGGKWEVVDLNLSFRSAPAVLEAVNAVFA 503

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN-IQKCFSDVALIEADNER-E 369
                  + + G   +            +    ++E +  + +      V  I  D+ R  
Sbjct: 504  PGRPGRDGVAGDEDITHLPHRGGQAGRVEVWPVVEPRPADELPAWKPPVERIRGDSPRTR 563

Query: 370  EAISIAIALRMSLD-----------ENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
             A  +A  +R  +D                  L+         +  EL    + +  +  
Sbjct: 564  LARLMAARIRAMIDGEVLESKGRPVRAGDVLVLVRRRGGFVEDLVRELKSRKVEVAGADR 623

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
            + L+  +    L +L N +    D + +AT++K PL   G  + +        ++     
Sbjct: 624  MVLTEQMAVMDLMALGNFLLLPEDDLTLATVLKGPLVGLGEDQLFTLAHHRGKDVGLWEA 683

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
             +              R  ++            L              + +         
Sbjct: 684  LRQGVADEGGVFEAAFRRLSELLAQADRVSPHTLYARVLGPLGGRRRLLARLGLE-AEDS 742

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
             ++  +                L  +         +L   + G+    +           
Sbjct: 743  IDEFMSLTLAFERAHPPSLQGFLHWLEAGALEIKRDLE--QAGRDAVRIM---------- 790

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                              TV       + +  L            L+  G  EG  P   
Sbjct: 791  ------------------TVHGSKGLQAPIVFLPDTMQVPTRSPRLLWLGEGEGELPAWP 832

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
             +   +  V +   + +   +        +         +     R              
Sbjct: 833  PRAEDMDSVCRQGADARKQSREREYRRLLYVAMTRAEDRLVVCGWRGLKAAPETCWHALV 892

Query: 719  LLVLGGTDFFDNLK-------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               L  T    +               L          ++     P              
Sbjct: 893  QCALAPTAAAFDDPFLAKAAETAEGPVLVLANAQTAPPEKEKGAGPGAGQSSPLPDWALL 952

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT--DRGTLFHNIITELIKKRINKNTP 829
             +E + +   P A       +        +   +    RG L H ++  +        + 
Sbjct: 953  SAEPEPIPPRPLAPSRPEGEEPTVRSPLAEMDGKPRWQRGKLIHRLLQTVPDLPPPDRSR 1012

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
             +   + +              ++   +          L+H              +P   
Sbjct: 1013 AMLRFLARPAW----------GLETPEQLAIANEVSDILDHPGLAGLFAPGSRAEVPLVG 1062

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALK 945
             I      ++G  DR+ +     V I DYKT   P    +   +L   Q++    AL 
Sbjct: 1063 RIGDR--VVSGRVDRLAV-SDTEVVIADYKTNRRPPATPDEVPELYVRQMAAYRLALA 1117


>gi|170749778|ref|YP_001756038.1| double-strand break repair helicase AddA [Methylobacterium
            radiotolerans JCM 2831]
 gi|170656300|gb|ACB25355.1| double-strand break repair helicase AddA [Methylobacterium
            radiotolerans JCM 2831]
          Length = 1165

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 76/808 (9%), Positives = 165/808 (20%), Gaps = 81/808 (10%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-------HLMKGTKGPIIIAG 234
                       +    +   L A          +            + +      +++  
Sbjct: 358  QALFQIAAEIHRRVEAQKARLGALDFDDLIHKALDLLGRVGAGWVLYKLDRGIDHVLVDE 417

Query: 235  STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
            +  + P    ++  +                     D       +     +   +T ++ 
Sbjct: 418  AQDTNPEQWAILRAITQEFAAGEGARIGSRTRFAVGDPKQSIYGFQGAEPREFALTRASW 477

Query: 287  TYSTHPQ-------------YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
               +                 S   +L  +D           +S E   R+ V + +   
Sbjct: 478  IAESRSAGLTFEDVPLTLSFRSTGLVLRAVDAVFALDAHNEGLSFEDTVRTTVHASARPG 537

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE-AISIAIALRMSLD--------- 383
               +                   + V   E        A  +A A+R             
Sbjct: 538  APGAVELWPIAEPEPAAEPDAWTAPVDAPETSAPAIVTARRVAQAVRAWTTTGDATGRIW 597

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                   L+         V   L   G+ +     + +S  +  + L +   A     D 
Sbjct: 598  RPGDVLILVRKRGPAFEEVIRALKGIGVPVAGQDRLEVSAHIAVADLVAAGRAGLLPADD 657

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            + +AT +K PL      +     A+  L                  +   D  A +    
Sbjct: 658  LTLATALKTPLVGLTDDDLVRIAARRDLAETLEDALHRH-------AEAGDAAARRGLEA 710

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                               L+         +                +     T     +
Sbjct: 711  LSGWIALAGLHGPFGFYARLLGPQGGRAKLVARLGGEAGDAIDVFLAAAAQAETGEDAPS 770

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
            +     R +      E G T+        +    +  +  + ++    +I          
Sbjct: 771  LGGFLARYVGA----EAGHTVKRDLESGRDEVRVMTVHGAKGLEAPVVVILDGCEPLGRN 826

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                L +  T  +    +              +            +              
Sbjct: 827  DPPLLPLPATEIALPPVWSGGRTQDCAATDAARAALLAKARQEHNR-------------- 872

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIA--SRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                +         +     R +   T A   R +   L              G   L  
Sbjct: 873  --LLYVAMTRAADRLIVAPFRGHERETEAAWCRMIHAGLEAALGAGRSLELPYGPATLWQ 930

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                             P   LE                   +   +        P    
Sbjct: 931  DGAPAGPAPAAAAPASGPEAELEPDWLRGPVPPEPAFEALNPSGALQAADGARVPPPRLA 990

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
            D     RG L H ++  L +    +        ++             P +         
Sbjct: 991  DAQARRRGILTHALLQHLPRVEPARRETAGRAFVRARA----------PGLPRAAAPAIV 1040

Query: 862  KISHSFLEHEEKIQSSIEKIFVNI--PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
            +     ++  E            +    ++        + G  DR+ +     V + D+K
Sbjct: 1041 RSVLRIVDAPELAPLFAPDARAEVALSGRVRAGGTDRVVQGRVDRLAVTAD-AVHLADFK 1099

Query: 920  TGDNP-KKETAQKLIDPQLSLEAAALKA 946
            TG  P            Q++L A  L  
Sbjct: 1100 TGRPPEPGAPLPAAEAGQIALYARLLAQ 1127


>gi|264677052|ref|YP_003276958.1| UvrD/REP helicase [Comamonas testosteroni CNB-2]
 gi|262207564|gb|ACY31662.1| UvrD/REP helicase [Comamonas testosteroni CNB-2]
          Length = 827

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 73/708 (10%), Positives = 174/708 (24%), Gaps = 107/708 (15%)

Query: 50  YVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
              T +A +E+ +    +     +      I +   +      A    +  L      + 
Sbjct: 80  VTFTNKAAKEMLTRLSAMLPYNVRGMW---IGTFHGLCNRLLRAHYQAA-KLPQAFQILD 135

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
              +L+ +  + +    D  +                     K L   I   + E  +  
Sbjct: 136 TQDQLSAIKRLCKQFNVDDERFPP------------------KQLMYFIAGCKEEGMRPG 177

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA-----LMRAEAEHL 222
           D+ A   +                 + + E+             +         A   H 
Sbjct: 178 DVVATDPDTRKK---------VELYQLYEEQCQREGVVDFGELMLRSYELLRDDAHLRHH 228

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVA------NHPNGAIVLPGLDCHIPTAIWNTITE 276
            +     I++     +     + +  +A       + + A V+   D       +     
Sbjct: 229 YQRRFQHILVDEFQDTNKLQYQWLKQLAGDDVGGRYESAASVIAVGDDDQSIYAFRGARV 288

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            +                                        ++       S      + 
Sbjct: 289 GNMADFIREFDVKNQI--------------------------KLEQNYRSFSNILDCANA 322

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALIT 393
               N++ L   +   Q     V + EA ++  EA  +   ++  +  +    ++ A++ 
Sbjct: 323 LISHNSNRLGKNLRTSQGPGEPVRIYEAPSDLAEAAWMVDEIKQLVRNDGFTRQEIAVLY 382

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R ++  L    I   +  G+            + L  +   +D  +   +V  P
Sbjct: 383 RSNAQSRVIESALFNSKIPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFLRVVNFP 442

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G     + +        +L     +        L                   R  
Sbjct: 443 ARGIGARTIEVLQDTARSSGTSLSDAVTAVGGAAGTKLQGFVAQIDVLREQTQGRTLREI 502

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            E  E    L++H           +  +       S     +        + LDE +  P
Sbjct: 503 IETVEEQSGLIEHYRNEKEGADRIENLQELVTAAESFV-TQEGFGRDAVAMPLDEQQNAP 561

Query: 574 NLWF--------------EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
            L                +E  +  +   + ++   +    + ++   +   L  G+   
Sbjct: 562 QLSQSPVSQGLDPNQPLLDEALRAPAGTAASMVNADTGETLSPLQAFLVHAALEAGD--N 619

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                   + ++    S+ L FD + +GG+ E           F       D      E+
Sbjct: 620 QAQAGQDAVQLMTVHASKGLEFDAVFIGGVEE---------GLFPHENAMMDRGGLEEER 670

Query: 680 YIGQAAHDFEMANGTRHLIYTRSL----RENNIPTIASRWLQRLLVLG 723
            +   A    +    + L  + S            + SR+   L    
Sbjct: 671 RLAYVA----ITRARKRLYLSHSQTRMLHGQTRYNVKSRFFDELPEEA 714


>gi|254387026|ref|ZP_05002304.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
 gi|194345849|gb|EDX26815.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
          Length = 533

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/405 (12%), Positives = 96/405 (23%), Gaps = 37/405 (9%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TLVE            A + I   +++A  ELR       G      P   +        
Sbjct: 94  TLVEAAAARVEAGTDPARILILTFSRKAAVELRDRAALRLGG--ARAPQATTFHSFCYGL 151

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
             A        +P        L       +    L +  +            +       
Sbjct: 152 VRAHQDTDLFADPL------RLLSGPEQDVMVRTLLEGQRRQRSIRWPDDLRAALTTRGF 205

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
           A  +  ++            L           W  AA FL           ++       
Sbjct: 206 ADEVRAVLARARELGLGPHALSDFAARLGRPDWQAAAAFLSEYLDVLD---LQGTLDYAE 262

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
               A++ AE    +      I +     +  +  RL+  +     G  ++   D     
Sbjct: 263 LLHRAVLLAERTPSLAAAYDVIYVDEFQDTDASQLRLLRALTG--PGGTLVAFGDPDQSI 320

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             +      +T                    +  L + R     L   +  +  R     
Sbjct: 321 YAFRGADINNTLDFEGAFPG---------ARVRALTVGRRSASALLAATRLLTSR----- 366

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-- 386
                   + +    +  ++     +    V +        E  +IA  LR +  E    
Sbjct: 367 -----MPLTRLPAAAVRAHRGLTPIREGGRVEVFTYPTAGAELDNIADVLRRAHLEEGVP 421

Query: 387 --KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSS 428
               + L+ A       ++  L   G+  +      PL      +
Sbjct: 422 WQDMAVLVRAGGRTLPAMRRALISAGVPAETDGTDTPLRHEPAVT 466


>gi|22537300|ref|NP_688151.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 2603V/R]
 gi|22534170|gb|AAN00024.1|AE014244_1 ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 2603V/R]
          Length = 759

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 86/697 (12%), Positives = 206/697 (29%), Gaps = 126/697 (18%)

Query: 46  SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLL-----LSYNL 99
           ++     T +A +E+R          + T+   I +   +       +        ++ +
Sbjct: 54  NILAITFTNKAAREMRERAIALNPATQDTL---IATFHSMCVRILRREADYIGYNRNFTI 110

Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
              V   ++   + R+I                ++      S    I  AKN  D++D I
Sbjct: 111 ---VDPGEQRTLMKRIIKQLN-----------LDTKKWNERSILGTISNAKN--DLLDEI 154

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             E++  +    +               +    K + E L    A       +  +R   
Sbjct: 155 AYEKQAGDMYTQV---------------IAKCYKAYQEELRRSEAMDFDDLIMMTLRLFD 199

Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           ++       +     I +     +  A  +L+  +A+      V+   D       W   
Sbjct: 200 QNKDVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGA 257

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             ++            +PQ  +  L +     ++ ++   NV N    R           
Sbjct: 258 DMQNILDFEK-----DYPQAKVVLLEENYRSTKKILQAANNVINHNKNRRPK-------- 304

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSAL 391
                        K+         +    A+NE+EEA+ +A  +   + E     K  A+
Sbjct: 305 -------------KLWTQNDEGEQIVYHRANNEQEEAVFVASTIDNIVREQGKNFKDFAV 351

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +      +R ++  L +  I   +  G    +      + + LN +   +D ++   +V 
Sbjct: 352 LYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLNILANTSDNISFERIVN 411

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P                       +       +  ++S   ++  +  + +      + 
Sbjct: 412 EP-----------------------KRGVGPGTLEKIRSFAYEQSMSLLDAS-----SNV 443

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
           +    K  A   V  +   I  L +   +   T    ++ D T           L     
Sbjct: 444 MMSPLKGKAAQAVWDLANLILTLRSNLDSLTVTEITENLLDKTGYLEALQVQNTL---ES 500

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              +   EE  +++  F    E     +         +  L           +++ + ++
Sbjct: 501 QARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAEVTLM 560

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + L G+ EGV+P + A              ++ A++   +    +   
Sbjct: 561 TLHAAKGLEFPVVFLIGMEEGVFPLSRA--------------IEDADELEEERRLAYVGI 606

Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723
                +++     TR+L         +R+++ +    
Sbjct: 607 TRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDEL 643


>gi|226307919|ref|YP_002767879.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4]
 gi|226187036|dbj|BAH35140.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4]
          Length = 830

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 80/728 (10%), Positives = 180/728 (24%), Gaps = 86/728 (11%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +        + P     +     T +A  E+R     + G ++  +  + +  
Sbjct: 61  TAVLTRRIAYLLAERGVTP---GQILAITFTNKAAAEMRERVAALVGPRANAM-WVSTFH 116

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                   A   L   LN                  +     D  + L       L +  
Sbjct: 117 SSCVRILRAQAALLPGLN----------------SNFSIYDSDDSRRLLTMISKDLELDT 160

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                 A+ LA  I  ++ E    E+     ++            +     ++ +RL   
Sbjct: 161 KRFS--ARLLATHISNLKNELVGPEEAVVAADQDPAE----LPRLIAKVYGHYQQRLRAA 214

Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPN--- 254
           NA          +             +     +++     +  A   L+  +        
Sbjct: 215 NALDFDDLIGETVALLQAFPQIAEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGGAGESD 274

Query: 255 ----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                A +    D       +   T ++            +P      L       +  +
Sbjct: 275 HAVAPAELCVVGDADQSIYAFRGATIRNIEEFE-----RDYPDARTILLEQNYRSTQNIL 329

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
               +V ++  GR                      E ++         +    ADNE +E
Sbjct: 330 SAANSVISKNTGRR---------------------EKRLWTDSGEGELIVGYVADNEHDE 368

Query: 371 AISIA---IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
           A  +A     L    +      A+     N +R ++    R G+   +  G+        
Sbjct: 369 ASFVASEIDRLVDQGETKFADIAVFYRTNNSSRALEEIFIRLGVPYKVVGGVRFYERKEV 428

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             + + L  +   +D +++  ++  P    G   +      +    ++            
Sbjct: 429 RDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVAVHSEHRNISFAAALRDGAEGK 488

Query: 488 ---LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              L +     IA+                 D++    L D        L          
Sbjct: 489 VALLNTRSQKAIASFLEMMDGLRALLPTPAADEDEPFELGDIGEVAEAVLERTGYRAELA 548

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
             +             L N+                   L     +        + +   
Sbjct: 549 ASSDP------QDGARLDNLNELVSVAREFSSDARNAAGLIDPDDEETAAMREGEPDPGS 602

Query: 605 WIDIITRL-IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
               + R+ +  +  +        + ++    ++ L F  + + G  +G +P   A    
Sbjct: 603 LAAFLERVSLVADADQLPDSDDGVVTMMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDP 662

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
                +  L      +   +       A         RS     I   ASR++Q +    
Sbjct: 663 AELSEERRLAYVGITR--ARQRLYLTRA-------IMRSAWGQPIQNPASRFIQEIPEDL 713

Query: 724 GTDFFDNL 731
                ++ 
Sbjct: 714 INWRREDP 721


>gi|29833214|ref|NP_827848.1| hypothetical protein SAV_6672 [Streptomyces avermitilis MA-4680]
 gi|29610336|dbj|BAC74383.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 286

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 82/270 (30%), Gaps = 32/270 (11%)

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
               PR+ S S     +  P     R I KL          +   RGTL H ++  L    
Sbjct: 4    AVPPRSLSPSRASDFMQCPLLYRFRVIDKLPEK-----PSEAATRGTLVHAVLERLFDAP 58

Query: 824  INKNTPEINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHEEK 873
              + T      +         +          ++        W     ++   +   E+ 
Sbjct: 59   AAERTAPRARSLVPGQWDRLRESRPEVVELFADDPEGERLARWLGEAEQLVERWFSLEDP 118

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
             +  +E     +  +  ++S G+ L G  DR+D+  SG V I DYKTG  P+     +  
Sbjct: 119  TR--LEPAERELFVEAELDS-GLRLRGIIDRVDVAPSGEVRIVDYKTGKAPRP-EYAEGA 174

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
              Q+   A  +       +       L  + L     +                E+  + 
Sbjct: 175  LFQMKFYALVVWR-----LKNVVPRRLQLVYLGSGDVLTYDPVVAD-------LERVERK 222

Query: 994  LIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
            L  +   +Q   +      R ++      +
Sbjct: 223  LHALWDAIQLATETGNWRPRPTK-LCGWCD 251


>gi|25011258|ref|NP_735653.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae NEM316]
 gi|23095682|emb|CAD46868.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 759

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 86/706 (12%), Positives = 206/706 (29%), Gaps = 126/706 (17%)

Query: 46  SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLL-----LSYNL 99
           ++     T +A +E+R          + T+   I +   +       +        ++ +
Sbjct: 54  NILAITFTNKAAREMRERAIALNPATQDTL---IATFHSMCVRILRREADYIGYNRNFTI 110

Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
              V   ++   + R+I                ++      S    I  AKN  D++D I
Sbjct: 111 ---VDPGEQRTLMKRIIKQLN-----------LDTKKWNERSILGTISNAKN--DLLDEI 154

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             E++  +    +               +    K + E L    A       +  +R   
Sbjct: 155 AYEKQAGDMYTQV---------------IAKCYKAYQEELRRSEAMDFDDLIMMTLRLFD 199

Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           ++       +     I +     +  A  +L+  +A+      V+   D       W   
Sbjct: 200 QNKDVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGA 257

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             ++            +PQ  +  L +     ++ ++   NV N    R           
Sbjct: 258 DMQNILDFEK-----DYPQAKVVLLEENYRSTKKILQAANNVINHNKNRRPK-------- 304

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSAL 391
                        K+         +    A+NE+EEA+ +A  +   + E     K  A+
Sbjct: 305 -------------KLWTQNDEGEQIVYHRANNEQEEAVFVASTIDNIVREQGKNFKDFAV 351

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +      +R ++  L +  I   +  G    +      + + LN +   +D ++   +V 
Sbjct: 352 LYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLNILANTSDNISFERIVN 411

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P                       +       +  ++S   ++  +  + +      + 
Sbjct: 412 EP-----------------------KRGVGPGTLEKIRSFAYEQNMSLLDAS-----SNV 443

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
           +    K  A   V  +   I  L +   +   T    ++ D T           L     
Sbjct: 444 MMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQNTL---ES 500

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              +   EE  +++  F    E     +         +  L           +++ + ++
Sbjct: 501 QARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAEVTLM 560

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + L G+ EGV+P + A              ++ A++   +    +   
Sbjct: 561 TLHAAKGLEFPVVFLIGMEEGVFPLSRA--------------IEDADELEEERRLAYVGI 606

Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                +++     TR+L         +R+++ +             
Sbjct: 607 TRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDELIQHQGLARP 652


>gi|320536129|ref|ZP_08036182.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis
           F0421]
 gi|320147046|gb|EFW38609.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis
           F0421]
          Length = 664

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 77/717 (10%), Positives = 183/717 (25%), Gaps = 122/717 (17%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+     E+TGKK   L  + +      +     +           
Sbjct: 51  SQILALTFTNKAAREMEERIKELTGKKLQNL-TVSTFHAFGVKILREHIAA--------- 100

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                       L WR+                L       +  ++   D  D+      
Sbjct: 101 ------------LGWRS----NFSIYDETDRNQLIKELGKELKFSQ---DSFDVYAV-GA 140

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
            + ++           W    D  ++  + + + L   NA       +  ++   EH   
Sbjct: 141 LFSNIKM-----GRKSWRGEHDAYRLLYQEYQDSLKIYNAVDFDDLIMLPIQLFTEHPEI 195

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               K     I++     +       M  +A +     V    D       W     ++ 
Sbjct: 196 LAEYKNRYRYIMVDEFQDTSIQQYNFMKLIAENN----VCVVGDDDQSIYSWRGANFENI 251

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +   +      PQ    KL                                   +    
Sbjct: 252 RMFEKDF-----PQLVEIKL---------------------EQNYRSTGTILAAANGVIA 285

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADR 396
            NT+  E  + +       + +   + E  EA  IA  +        +      ++    
Sbjct: 286 HNTNRKEKALWSGNDSGKPIEIFIPETETVEADFIADMILTEKARENRSFSDFGVLIRAN 345

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
           +L+R ++       I   +S G           + S L  +   +D + +  ++  P   
Sbjct: 346 SLSRAIEESFLNANIPYKMSGGTSFFQRKEIKDVISYLRVVANPDDDINLLRIINTPRRG 405

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G     +       +  ++R   N+        L+ +       +             D
Sbjct: 406 IGKRTVEIISHIATEQKCSIRAAINN--------LLANSEGGSIKD---------KGLAD 448

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            +    L+    + +          +       +    +        +   +  +    +
Sbjct: 449 VQSFADLISRHRKLL---------LSGKGLAQKVRKLVEEINYFDYLIQEYQKNEKAARY 499

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                + L     +          N  ++++ IT L   +      E    + I+    +
Sbjct: 500 KFLNIERLIQSIEEWEHNPDNFDVNLYDYLNRITLLTRDD---MNEEDKGEVQIMTIHAA 556

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTR 695
           + L F  + + G  EG+ P   +              ++  +  I +    F +A    +
Sbjct: 557 KGLEFPVVFIAGTEEGIIPHARS--------------MEENDGDIEEERRLFYVAITRAQ 602

Query: 696 HLIYTRSLRENNI-----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
             +Y  S R             S +L+ +          + +           ++  
Sbjct: 603 QKLYITSCRTRKKMGTFRECAPSPFLEEIPADLVHYHEPDAQAEAADIAKMFAQMKT 659


>gi|159045978|ref|YP_001534772.1| double-strand break repair helicase AddA [Dinoroseobacter shibae DFL
            12]
 gi|157913738|gb|ABV95171.1| double-strand break repair helicase AddA [Dinoroseobacter shibae DFL
            12]
          Length = 1125

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 75/806 (9%), Positives = 173/806 (21%), Gaps = 106/806 (13%)

Query: 187  FLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHLMKGTKGPIIIAGSTGS 238
            F  +  K +                +          +       + G    +++  +  +
Sbjct: 343  FANVFLKAYQAGKDARGWLDFDDLILRAKTLLTDPGVAQWVLFRLDGGIDHMLVDEAQDT 402

Query: 239  IPATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
             P    ++  +         A       +    D       +        +    +    
Sbjct: 403  SPVQWDVIRLLTREFTAGQGARTNVLRTIFVVGDQKQSIYSFQGADPAGFDRMRQHFGTE 462

Query: 290  ---THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS----KSFLPPDTSDMRNT 342
                        LL      R  ++ +    +    + +                     
Sbjct: 463  LAQVGTPLQERLLLFSFRSSRAVLRHVDETFSRFQHQGLGGGSEHIAFHEALPGRVDLWP 522

Query: 343  DILENKIPNIQKCFSDVALIEADNERE-EAISIAIALRMSLD---------------ENK 386
             + + +    Q     V  I AD+ R   A  IA  +R  L+                  
Sbjct: 523  ALAKAEKQTPQNWTDPVDKIAADDPRHVLARKIAAEIRRLLESGTQITSAKGETRPITPG 582

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                L+     +   +        + I  S  + +   L    L +LL       D MA+
Sbjct: 583  DFLVLVQKRSEIFHELIRACKTERLPIAGSDRLRVGAELAVQDLMALLAFAATPEDSMAL 642

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A +++ PL  +   E ++    N    +         D        L  +  Q +     
Sbjct: 643  ACVLRSPLCGWTQRELHVLAQPNRNRFLW--AALRDSDAHGETRAFLQDVRDQADFLRPY 700

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                R+         L+     +    +                                
Sbjct: 701  DLLERVLTRHGGRERLIARLGEEAEEGIDVLLDQALQYEQT------------------E 742

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                     WF ++  ++        +    +  +  + ++    ++            S
Sbjct: 743  IPSLSGFVAWFRQDDMSIKRQIDARRDEIRVMTVHGAKGLEAPIVIMPDCAKPSNTNTRS 802

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L  L                                   V++             +   
Sbjct: 803  KLLPLEDGPLVWAGNKETR-------------------PEVIKPRAEEIALRDTEERMRL 843

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
             +         +   +  E    T           +             +       +L+
Sbjct: 844  LYVAMTRAESWLIVAAAGETGTGT------DSWHAMVTEGIEAQTPHEVEFPTGTGLRLE 897

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-- 804
            +    P    P P     +  +                     +     I +  +  D  
Sbjct: 898  HGVWPPDAPSPMPLHTAHSPQQPAFAPMPPMPERRNTRAP-SDLGGAKVIENAIEGLDKD 956

Query: 805  -RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
                RG   H ++  L              L+         ++N     D++        
Sbjct: 957  AAQRRGKQIHLLLEHLPDHPPESWASLAPRLL-------GAEDNPETVADLLAEAR---- 1005

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-GIHLTGFADRIDLLKSGFVDITDYKTGD 922
                LE+              +     +  + G  + G  DR+ +     +   D+K+  
Sbjct: 1006 --GVLENPALEPLFAPDTLAEVSLTAPLPGLNGAQILGTVDRLIIGPE-RIVAVDFKSNQ 1062

Query: 923  --NPKKETAQKLIDPQLSLEAAALKA 946
                  E   + +  Q+   A AL A
Sbjct: 1063 AVPAHPEDTPEGLLRQMGAYAEALAA 1088


>gi|218893377|ref|YP_002442246.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa LESB58]
 gi|218773605|emb|CAW29419.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa LESB58]
          Length = 1171

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 100/922 (10%), Positives = 240/922 (26%), Gaps = 73/922 (7%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L    V   R  PL PL    V ++  +    Q L+    E   +       I +  +V 
Sbjct: 25  LRDLAVSWMRRYPLAPLESERVLVH--SNGIAQWLKLALAEDPREDGGGGGGIAAALEVQ 82

Query: 86  ----EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                       +L     P VS + +     RL+ +    L            L+    
Sbjct: 83  LPAQFLWQAYRAVLGRESIPEVSELDKAPLTWRLMRLLPGLLERPEFRTLQRF-LADDAD 141

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLAADFLKIASKYWTER 198
                 LA+ LAD+ D  +     W D  +   ++               +  ++ W   
Sbjct: 142 LRKRHQLAERLADLFDQYQVYRGDWLDDWSQGRDQLRTANGQARPLGADERWQAELWRAL 201

Query: 199 LVELNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANH 252
           L ++ A S    +  + R   E L       +     +++ G +     T   ++ +A  
Sbjct: 202 LADVGADSLARSRSGVHRRFIEALRSASAAPRALPRRVVVFGISSMPAQTLEALAALARF 261

Query: 253 PNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
               + +     H    I             ++      ++       Q++   L  +  
Sbjct: 262 SQVLLCVHNPCRHHWADIVADKDLLRHEYRRQQRRAGVPADLDEDRQHQHAQPLLAAWGK 321

Query: 305 IKREDVKRLGNVSNEMYGRS------------------MVISKSFLPPDTSDMRNTDILE 346
             R+ +  L +  +    R+                    +               +  E
Sbjct: 322 QGRDYINLLDSYDDPDSYRNLFGEVNGGRIDLFSEEAPHGLLGQLQDDILELRPLAETRE 381

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRV 402
           +  P   +  + +    A + + E   +   L    + +     +   ++  D N     
Sbjct: 382 HWPPVAPRSDASIRFHVAHSAQREVEILHDQLLARFNADPSLKPRDVIVMVPDINAYAPH 441

Query: 403 KLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +        +  I   ++             L  LL           I  L+  P  
Sbjct: 442 IEAVFGQVPRDDQRFIPYTLADQGQRGREPLLIALEHLLKLPDSRFAVSEILDLLDVPAL 501

Query: 456 KFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVP 506
           +  F   E  L+     +E   +R   ++     L        +     +        V 
Sbjct: 502 RRRFGVDEADLATLHRWIEGAGVRWGLDAAQRERLGLPAGLEGNSWRFGLRRMLLGYAVG 561

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              +    +  +    L   +   +  L+       +     +        +  L  V  
Sbjct: 562 EGAALQGIQPYDEVGGLDAALAGPLAVLLERLEVAYAELAEPATPAQWGERLQALLTVFF 621

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
           + H +   L   +  + L                      +     +D   +  +    +
Sbjct: 622 EAHDERDELLLTQLLQLLERWQEHCACAAFAEPLPISVIREAWLGGLDQGGLNQRFLAGA 681

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            +     +  R + F  + L G+N+G +P+  +   F           ++  +       
Sbjct: 682 -VSFCTLMPMRAIPFRLVCLLGMNDGDYPRQQSPLDFDLMRNDYRPGDRSRREDDRYL-L 739

Query: 687 DFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
              + +    L  +   R   +N     S  + +L       +  +    G+  L    +
Sbjct: 740 LEALLSAREQLYVSWVGRSIRDNGERPPSVLIGQLRDHLAAGWRLDPDGDGEALLRALTQ 799

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                 QP  +R     P +     ++++   + ++    +              +    
Sbjct: 800 --EHPLQPFSRRYFHDAPEQGVDGLFTYAREWREVHSEDDIAVPDAEAPLPPLELEGALG 857

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKI 863
                    N +    ++R+     +    +    +  FE + L              + 
Sbjct: 858 LRALAEFLANPVNAFFQQRLKVRFDD--EQLTGNDEEPFELDALDNWKLQFELTERMKRW 915

Query: 864 SHSFLEHEEKIQSSIEKIFVNI 885
                + + +   +  +  V  
Sbjct: 916 VER--DWDAEGLPAQLQAQVER 935


>gi|229495094|ref|ZP_04388840.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121]
 gi|229318025|gb|EEN83900.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121]
          Length = 830

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 80/728 (10%), Positives = 181/728 (24%), Gaps = 86/728 (11%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +        + P     +     T +A  E+R     + G ++  +  + +  
Sbjct: 61  TAVLTRRIAYLLAERGVTP---GQILAITFTNKAAAEMRERVAALVGPRANAM-WVSTFH 116

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                   A   L   LN                  +     D  + L       L +  
Sbjct: 117 SSCVRILRAQAALLPGLN----------------SNFSIYDSDDSRRLLTMISKDLELDT 160

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                 A+ LA  I  ++ E    E+     ++            +     ++ +RL   
Sbjct: 161 KRFS--ARLLATHISNLKNELVGPEEAVVAADQDPAE----LPRLIAKVYGHYQQRLRAA 214

Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPN--- 254
           NA          +             +     +++     +  A   L+  +        
Sbjct: 215 NALDFDDLIGETVALLQAFPQIAEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGGAGESD 274

Query: 255 ----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                A +    D       +   T ++            +P      L       +  +
Sbjct: 275 HAVAPAELCVVGDADQSIYAFRGATIRNIEEFE-----RDYPDARTILLEQNYRSTQNIL 329

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
               +V ++  GR                      E ++         +    ADNE +E
Sbjct: 330 SAANSVISKNTGRR---------------------EKRLWTDSGEGELIVGYVADNEHDE 368

Query: 371 AISIA---IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
           A  +A     L    +      A+     N +R ++    R G+   +  G+        
Sbjct: 369 ASFVASEIDRLVDQGETKFADIAVFYRTNNSSRALEEIFIRLGVPYKVVGGVRFYERKEV 428

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             + + L  +   +D +++  ++  P    G   +      +    ++            
Sbjct: 429 RDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVAVHSEHRNISFAAALRDGAEGK 488

Query: 488 ---LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              L +     IA+              +  D++    L D        L          
Sbjct: 489 VALLNTRSQKAIASFLEMMDGLRALLPTAAADEDEPFELGDIGEVAEAVLERTGYRAELA 548

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
             +             L N+                   L     +        + +   
Sbjct: 549 ASSDP------QDGARLDNLNELVSVAREFSSDARNAAGLIDPDDEETAAMREGEPDPGS 602

Query: 605 WIDIITRL-IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
               + R+ +  +  +        + ++    ++ L F  + + G  +G +P   A    
Sbjct: 603 LAAFLERVSLVADADQLPDSDDGVVTMMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDP 662

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
                +  L      +   +       A         RS     I   ASR++Q +    
Sbjct: 663 AELSEERRLAYVGITR--ARQRLYLTRA-------IMRSAWGQPIQNPASRFIQEIPEDL 713

Query: 724 GTDFFDNL 731
                ++ 
Sbjct: 714 INWRREDP 721


>gi|332142121|ref|YP_004427859.1| exodeoxyribonuclease V, gamma subunit [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552143|gb|AEA98861.1| exodeoxyribonuclease V, gamma subunit [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 1206

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 90/760 (11%), Positives = 195/760 (25%), Gaps = 96/760 (12%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVV 85
           TL+     D   P      TI V +      +  +     G    I   LP       V 
Sbjct: 19  TLLRQQPLDVFTPE-----TILVESPGMQHWVSMQMANKQGVAMNIDFPLP-------VR 66

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL-----YPESPLSLPI 140
               TA  +L  +  P  S  +R +   R+  + ++              Y +S  S   
Sbjct: 67  FMWNTARTVLGADKVPKQSPYRREVLTWRIDNVLQDNALMDSDAFEQVNKYWQSAGSEQE 126

Query: 141 SPANAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                + LA  LAD+ +        W    E+      +     W          S+ W 
Sbjct: 127 QGLQRLQLATALADVYEQYLLYRPDWLFKWENNERAVFDDM-EVWQ---------SEIWR 176

Query: 197 ERLVELNASSPVG-YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             L +     P   +Q+ L   EA ++       +I+       P        +A H + 
Sbjct: 177 -ILAKDQPLHPARLHQMMLEALEAGNVPAHLPKRVIVFAINTMAPQLIAFFDALAQHIDI 235

Query: 256 AIVLPGLDCHIPTAIWNT---------------ITEKSTNITSSNTTYSTHPQYSLAKLL 300
            I       +      ++               + E  +N    N        ++L   L
Sbjct: 236 HIFHLNPSVNYWGEAKSSSEQAKLLRLEGLKKWMEEDQSNPLLGNLGKQGRELFNLLTEL 295

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
           D  +I   D     +            S+  L    +D+      +  I   +     V 
Sbjct: 296 DTFEISAFDSPDFESAGEGEDEHGQCHSRGLLDYIHNDILQAAHPQPLIHQSKNKDDSVT 355

Query: 361 LIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK-LELTRFGI---- 411
           ++   +   E   +   L   L ++         ++                R G     
Sbjct: 356 VMCTHSALREVQVLHDHLLHWLSQDKTRTPSDILVMCPAIENYAPFVDAVFHRVGTKSLG 415

Query: 412 -------NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG------ 458
                     I+   P+      +   +LL           I   ++    +        
Sbjct: 416 ATGQVRLPCTIADRSPMDAEPLIAAFMALLQLPDSRFGVSDILDYLQLDSVQKRFSVSQD 475

Query: 459 --FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                    +  +    +         + ++L          ++    +    S +   D
Sbjct: 476 DIEQMVVWLKQAHIHWGLNSAHKTAVSEGVNLDDTYSWWWGIRRLLMGMLAPDSEMIVSD 535

Query: 517 KELAVLL----VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
                 +       + + I  +              +   W+K  +             +
Sbjct: 536 VLTIPDVEGQSALTLGKLIEVVALLGEFAQELTQPRTPEQWSKALIALRDAC------FM 589

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS---STLF 629
           P    ++    ++ + + +              +  +  L+      P          + 
Sbjct: 590 PTKDQQQSWDLIAKVAADLAARCEEANYEHELTLRQVRDLLLNRFSSPDAGNHFMTGQVT 649

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-AHDF 688
           +   L  R + F  + + GLN+  +P+ ++    L   + +    +  ++       + F
Sbjct: 650 VCSMLPMRSIPFKKVCILGLNDSEFPRKSSP---LGLDLMASDGRRVGDRSRRLEDRYLF 706

Query: 689 EMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG 724
             A       L  +    +  NN     S  L   + +  
Sbjct: 707 LEAIISTRESLYLSYQGNDVTNNSERQPSLVLAEFMDMLE 746


>gi|42526415|ref|NP_971513.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405]
 gi|41816608|gb|AAS11394.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405]
          Length = 662

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/584 (10%), Positives = 150/584 (25%), Gaps = 87/584 (14%)

Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPII 231
               W    D  K   K + + L   NA       +  ++   EH       +     I+
Sbjct: 149 GRKDWTNEHDSYKALYKEYQDGLKLYNAVDFDDLIMLPIKIFKEHPEVLAEYRERYRYIM 208

Query: 232 IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
           +     +       M  +A+      +    D       W   + ++      +      
Sbjct: 209 VDEFQDTSTQQYNFMKLIADKN----ICVVGDDDQSIYSWRGASFENIRNFEKDFP---- 260

Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
                    + ++IK E   R       +   + VIS +      +     D        
Sbjct: 261 ---------EMIEIKLEQNYRSTGT--ILAAANGVISHNVNRKVKALWSEKDSGRP---- 305

Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTR 408
                  + +   +NE  EA  I+  +               ++    +L+R ++     
Sbjct: 306 -------IEIFIPENEAAEADFISDMILSLKQREGFKYSDFGVLIRANSLSRPLEESFLE 358

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
             I   +S G           L S L  +   +D + +  ++  P    G        A 
Sbjct: 359 VNIPYRMSGGTSFFQRKEIKDLISYLRVVANPDDDVNLLRIINTPRRGIGKKTLETLSAL 418

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                 ++R                     +    + P      S ED +    L+    
Sbjct: 419 ATENSCSMRTAI------------------RLLLENPPEDMRGKSIEDLKEFAELISTHR 460

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
             +               +++ +++        +     +   +         ++     
Sbjct: 461 TQLLSGKGLAQKVRKLLDDIAYNEYLIAEYQKSEKAAQFKMMNI---------ESFLHSM 511

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                    +  +  ++++ IT L   +T     E+   + I+    S+ L F  + + G
Sbjct: 512 DDWENNPDNLDGSLYDYLNRITLLTRDDT----EEEKGEVNIMTIHSSKGLEFPVVFIAG 567

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
             +G+ P   +                       +    +      +  ++  S R+   
Sbjct: 568 AEDGLIPHARSVEENDG-------------DVEEERRLFYVAITRAQQKLFITSCRQRRK 614

Query: 709 -----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                    S +L  +          + +   +   D   ++  
Sbjct: 615 QGGITECAPSPFLDEIPADLVEYHEPDAQAEEERIADIFSQMKK 658


>gi|323138754|ref|ZP_08073819.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242]
 gi|322396001|gb|EFX98537.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242]
          Length = 1130

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 97/922 (10%), Positives = 230/922 (24%), Gaps = 68/922 (7%)

Query: 56   AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115
            A ++  ++F       +   P   ++   VE        L+   +P        L  +R 
Sbjct: 215  AFRQAAADFAGFMDGAAAAEPETVTI---VERLAEMATALANGPDPATPAGLVHLLTSRP 271

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
                  K              +       +      L D  +   T         A    
Sbjct: 272  HPDLCTKAGAFASYRRKGKWAAAAKQAGLSKADGDRLNDAAETHYTACCDAWAALAQAAA 331

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPI 230
             + +      D  +   + + +               A      +       +      +
Sbjct: 332  GHAL--AALIDEARPILQRYRDHKRASAQLDFDDLIFAARDLLRDYDAVRRALGQRFVHV 389

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            ++     + P    +   +   P             P A++     K            T
Sbjct: 390  LVDEFQDTDPQQTEIFWRLCGEPVDGDDDWTRFRIRPGALFLVGDPKQAIYRFRGADVGT 449

Query: 291  HPQ----YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS-DMRNTDIL 345
            + Q    +        L I          ++        V+S    P  T+ D  + D  
Sbjct: 450  YVQARDAFRAQAPGSLLSISTNFRSCASILTFVNERFEAVLSADGQPGFTALDPFHDDRG 509

Query: 346  ENKIPNIQKCFSDVALIEADNERE--EAISIAIALRMSLDENK--------------KKS 389
               +  +    +D        ++   EA +IA      ++ +                  
Sbjct: 510  GPCVAALDIAVADENGKATAEQQRDAEAEAIAELCARLIENHPIIDRRSGAERACQPGDI 569

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            AL+        R +  L R GI +   AG  L        L +L   +    D +A+  L
Sbjct: 570  ALLAPTGAELWRYEEALERRGIPVATQAGKGLFRRQEIQDLIALTRVLADRRDTLALGAL 629

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-SLVLDRIATQKNNTHVPHW 508
            ++ PL      E+ L      L     + ++     + +  +++   +  +         
Sbjct: 630  LRGPLVG--LTEEDLLDIIWGLPRSEKQPDRIPRLDLGIDPAVIAHPLTREVIERLQSLS 687

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
            +   S     L    VD +      L  ++        N+ +     L+           
Sbjct: 688  RRGNSTTAHALLSQAVDVMRVRPLLLERHRGQAERALANVDLY--LSLSTGYAVRGLRAF 745

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
               + + W +E  + +        E  +    +A + ++    +           +S+ +
Sbjct: 746  AEAMTSAWSDEA-RAVEGRPDAQEEAVALFTMHAAKGLEWPIVIPVNTMTGVIAAESAVI 804

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
                                 +                  ++    +  E    +    +
Sbjct: 805  ---------------------DRQTETFYCPVLGVTPEGYETARQAEKEELDRERIRLWY 843

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
              A   R L+    L      +     +   L L      D  +           + +  
Sbjct: 844  VAATRARELLVLPRLDTTPSKSAWIGLVD--LSLADLPGLDVSRLPAGRTAASAGEDNTQ 901

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA------VYARRILKLDFIPHFKKD 802
            T+       +     + +    + S  +                     +   +      
Sbjct: 902  TRASFAAEAETIAAAQTRLTWLAPSRDENAAGTVLREEEAALWTGSADDQRPELEAAALV 961

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                +RG + H ++ E++     +    +      +I +  +     P   +    L   
Sbjct: 962  QGGRERGLILHKLMEEVLTGETAEAEAALTERAADLIRALGQAPVADPATGLSAEELAAC 1021

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF-VDITDYKTG 921
            +  +    +             + A  + + +     G AD + + + G  V + D+K+ 
Sbjct: 1022 VVRTLALPDIAALRPGLLAEFPVYAAQSSDGVETATAGIADALTVGEDGRPVVVVDWKSD 1081

Query: 922  DNPKKETAQKLIDPQLSLEAAA 943
             NP +         Q+S     
Sbjct: 1082 VNP-EAQTLDHYRAQVSAYLDM 1102


>gi|328957497|ref|YP_004374883.1| ATP-dependent deoxyribonuclease subunit B [Carnobacterium sp. 17-4]
 gi|328673821|gb|AEB29867.1| ATP-dependent deoxyribonuclease subunit B [Carnobacterium sp. 17-4]
          Length = 1206

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 33/248 (13%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT- 828
             S S ++    D Y  +    LKL     F+        G  FH+ +  L K+ I KN  
Sbjct: 828  LSVSRLEAFYADHYGHFLTYGLKLQERDVFE--LSPAGTGEFFHDALDHLFKQIIQKNLS 885

Query: 829  --PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS----------FLEHEEKIQS 876
                   +++Q+      +    P   I+      K              ++   +  ++
Sbjct: 886  FDQLTEDMLEQLTSEVLTELYGKPKFSILNASNRMKYIRDQLGQTIKKMVWVIGNQSRRT 945

Query: 877  SIEKIFVNIPAK----------MAIE---SIGIHLTGFADRIDL--LKSGFVD-ITDYKT 920
            +++ +   +             ++        +HL G  DR+D   L   +   + DYK+
Sbjct: 946  NMKNVQTEVLFGQVANQTGIEGLSFPLNNGGTLHLRGKIDRVDAMNLGDDYYLSVVDYKS 1005

Query: 921  GDNP-KKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDK 978
              +    + A   +  Q+          +   I    K A  FY+ +   F       D+
Sbjct: 1006 SAHKFNYQDAYYGLAMQMITYLDTALQNAVGLIGHEAKPAGAFYLHVSNPFMKKGTFLDE 1065

Query: 979  KKYSADEL 986
              Y  + L
Sbjct: 1066 DAYINELL 1073



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/607 (10%), Positives = 172/607 (28%), Gaps = 56/607 (9%)

Query: 154 DIIDIIETEEKKWEDLH----ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
           D+   + +      DL+    +L        + L    L +  + +   L+         
Sbjct: 133 DLFLELRSGRIAQADLNHMMFSLGTSPKEADFKLKLQDLSLIYQAFDAALLNKY-IESED 191

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
              AL++   E     ++    I            L+  +        +    D      
Sbjct: 192 IVSALIQKVEEL--DLSQTTFYIESYYQFTAQEQALILALMKAAKKVTIALTSDKAYAVE 249

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
                         +    S    Y L +L    ++     K +  V     G    + +
Sbjct: 250 ---------KPEMHNLFQTSGATYYKLYQLARQNNVPVYKDKLIQEVDEAYCGELNQLEE 300

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENK 386
            ++         T     ++  +    + + +  A+N + E   +A  +R  +   +   
Sbjct: 301 FWVETSQ----LTPANNERVDGLDAMGNCIEIWAAENRQAEITHVAKEIRKLVATGNYRY 356

Query: 387 KKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
           K   ++T + +    +   L +   I + + +   ++      ++ SL++   +   +  
Sbjct: 357 KDILVLTRNMDDYLAIIEPLFSSHDIELFVDSAELMNQHPLIEVIDSLVSIYKRNWRYAD 416

Query: 446 IATLVKHPLAKFGFPEKYLS--RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ---- 499
           +  L++  L       + +        +     R  +    +   ++++L          
Sbjct: 417 VMRLLRTELVIPKSEGEEVLSKERAQRVSQQVHRARQFRERVDVTENVLLSYGYEGYQWT 476

Query: 500 ------------KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                       ++         R+ +    +   L   ++     L   +T+K++    
Sbjct: 477 KSDPWHYTRYFYEDAEFQSDNDQRIEQIANSIKTDLTGLLVPFFNRLEKAQTSKDAAKEL 536

Query: 548 LSISD--WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
               +    K  +   ++  ++++        E+  +T   L  + +E       N   +
Sbjct: 537 YVFMENIGVKDQIGFWRDQAIEDNDLEEARKHEQTWQTFLQLLDEYVEVLGEEPFNLDSF 596

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
             I+    D  T          +   G   +R+       + G+ +   P  T     L+
Sbjct: 597 YAILMTGFDNATYSMVPPSIDQVTFSGIEGTRIGTAKVTFMLGVTDAHLPAKTENKSILT 656

Query: 666 RVMQSDLNL---------KTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIA-S 713
              +   +           T E  +         A    +  LI++    +        S
Sbjct: 657 EEDRDFFSQFLDDTKYLKPTVEAVMASEPFIAYQAFLDSSEKLIFSYPTSDETKNGPKLS 716

Query: 714 RWLQRLL 720
            ++ R+ 
Sbjct: 717 PYVDRIA 723


>gi|170099549|ref|XP_001880993.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644518|gb|EDR08768.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1055

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 84/744 (11%), Positives = 194/744 (26%), Gaps = 74/744 (9%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT--ADLLLSYNLNPPVSNIQ 107
              T +A  E+R    ++ GK+ T    + +   +        A L+            +
Sbjct: 79  VTFTNKAANEMRERLTKLIGKERTSQLRMGTFHALCARFLRKYAHLVKLAENFTVCDAEE 138

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
               +  L+  +   L     DL    P  +  S + A    ++ +  ++ +   E++  
Sbjct: 139 SKKIIQALLKPYTAYLASENLDL---QPGRVVSSISKAKSKEQSGSVFLEEVIKAERRIR 195

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
             + L               +      + + L   NA          ++   ++      
Sbjct: 196 QRNGLPLGDDVEEKKTIDRIIGEIFLEYEKTLKRNNALDFDDLLTYGVKLFTKNDETVIW 255

Query: 228 -GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
              I++     +     +LM  +A      IV    D       W +    + +    + 
Sbjct: 256 CRHILVDEFQDTNITQYKLMRALAIARCVTIV---GDPDQSIYGWRSAEVGNLSKMRRDF 312

Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
             +         L +        +K    + ++   R      +  P   + +       
Sbjct: 313 PDTEQ-----VLLEENYRSTAAILKASLAIISQDKSRIQKSLHTSHPNGFTPV------- 360

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-----KKSALITADRNLARR 401
                         L +   E EEA  IAI ++  +             ++     L+R 
Sbjct: 361 --------------LYQVQTEHEEAAFIAIEMKRLVAHMGGALNWGDFVILLRFNALSRV 406

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           ++  L + GI   +  G      L    L + L  +   N   A    V  P    G   
Sbjct: 407 IETALQKEGIPSRVLGGHKFFERLEVKDLLAYLQVVDNPNFVPAFKRAVNVPGRGIGEKT 466

Query: 462 KYLSRAKNALELVALRG---NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                 +      +              D+K  V  ++A           Q+  S    +
Sbjct: 467 VAELIGRAEKSNQSPLAIVEAICDNKAPDIKPAVKRKVAPFVTAIRSLRAQAHNSSSPAD 526

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           L   LVD I                     + SDW        + +              
Sbjct: 527 LVRKLVDLIKY-------------EDHLKKTQSDWESRWENVKELITFASEM-------- 565

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITR--LIDGETVKPKIEKSSTLFILGTLES 636
           E           +    + I+ +       +    L      + +      + I     +
Sbjct: 566 EAQNQAEEAADAVAGGDNSIEMSTTPLRQFLQASMLSSEGDNQSEEGNKDKVTISTCHSA 625

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG--- 693
           + L +  +++  +++  +P   +++   +   +      T  + +   +           
Sbjct: 626 KGLEWPVVMIPSVDQNTFPFYRSEDT--AEERRLLYVACTRAQSLLYVSRATTRMVAGET 683

Query: 694 -TRHL--IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            ++ L    +  L +N +    + + Q++      D         +   +          
Sbjct: 684 KSKELSEFISSVLNDNGLKNEMAFFSQQIPFFTQEDRATIATVLQRPPPEEAEVQRRVAT 743

Query: 751 QPHYKRPKPFPPLEAQPRTYSFSE 774
                R  P           + S 
Sbjct: 744 FERSGREHPMQIYWGGGHHVAPSR 767


>gi|160946301|ref|ZP_02093510.1| hypothetical protein PEPMIC_00261 [Parvimonas micra ATCC 33270]
 gi|158447417|gb|EDP24412.1| hypothetical protein PEPMIC_00261 [Parvimonas micra ATCC 33270]
          Length = 1152

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 68/220 (30%), Gaps = 34/220 (15%)

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
            S S+++  +  P++ +    L+         D    D GT  H I  +  K     N  
Sbjct: 771 VSISKLENFMRCPFSYFINYGLRAKERE--VYDFSPADYGTYCHKIFDDFFKGIFENNID 828

Query: 830 E---INHLMKQIIDSHFEKENLPPHIDIIWRHLFH--------KISHSF-LEHEEKIQSS 877
                   +++ ++   +K     +  +     +          I  S  +  E+  + +
Sbjct: 829 WNIIDREFIQREVEKLTKKMAEKSNFILESSPKYKYFSTITQKNIVESIEIMAEQVRRGN 888

Query: 878 IEKIFVNIPA--------KMAI-ESIGIHLTGFADRIDLLKSGF----VDITDYKTGDNP 924
                                +     I L G  DRID+ K G     + I DYK+    
Sbjct: 889 FVPTGFETEFGDESIKPITYTLKNGKEIKLVGKIDRIDVFK-GENFDFLRIIDYKSSKRD 947

Query: 925 -KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFY 962
                    +  QL +   A L     S  +  K A LFY
Sbjct: 948 IDLNQVYAGLQLQLFVYMNAILS----SNKERYKPAGLFY 983


>gi|269215715|ref|ZP_06159569.1| ATP-dependent DNA helicase PcrA [Slackia exigua ATCC 700122]
 gi|269131202|gb|EEZ62277.1| ATP-dependent DNA helicase PcrA [Slackia exigua ATCC 700122]
          Length = 770

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 80/692 (11%), Positives = 189/692 (27%), Gaps = 99/692 (14%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     + G  +  +  + +   +       D             
Sbjct: 53  QILAITFTNKAAAEMRERLGRLVGPAARGM-WVSTFHSMCVRILRTD------------- 98

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            +RL       +   +    ++KD+  E  +     P NAI     ++   + +      
Sbjct: 99  CERLGFSQGFTIYDDDDSKRLVKDIMAELNIDPKRWPVNAIR--SRISAAKNELIVPGVF 156

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH---- 221
            ++ H              A       +   ERL   N+       +        H    
Sbjct: 157 ADEAHD-----------PTAKVCARVYERLQERLRAANSFDFDDLLLYTYLLFKHHPDVL 205

Query: 222 -LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     +  A   +   +A      +V+   D       W     ++  
Sbjct: 206 AAYQDRFKYLLVDEYQDTNHAQYEITKQLAAKNRNIMVV--GDDDQSIYSWRGADIRNIL 263

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
              S      +PQ    KL          +     V +    R                 
Sbjct: 264 EFES-----DYPQARSVKLEQNYRSTGTILAAANAVVSHNRNRKAK-------------- 304

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNL 398
                  K+         +++  A +ER+E   IA  +     +  +  ++A+       
Sbjct: 305 -------KLFTEAGEGDKISVYMAPDERDEGRWIAGEIERLHGQGISYDETAVFYRTNAQ 357

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L R G+   I  G           + + L  I    D +A   ++  P    G
Sbjct: 358 SRSLEDMLLRAGVPYRIVGGTKFFDRAEIRDVMAYLTLIVNPADDIAAKRVINVPRRGIG 417

Query: 459 FPEKYLSRAKNA-LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                   A    L L  ++  +       L++     +A+    T +       + + +
Sbjct: 418 RTTIEHIDAVAQTLHLTFMQAAQACIADETLRASTRSALASF---TGLIAEAGTYAGDLR 474

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           ++   ++D           +  +  S   N  I ++  +    ++   +DE    P    
Sbjct: 475 KVIEAVIDKSGLIAALEAEHTDDAQSRVEN--IREFLSVVDEYIETHEVDESALPPE--- 529

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                        + +       +  ++I+ +   +  +           + ++    S+
Sbjct: 530 ---------GVRLLADVRQLSPESMADFIEWVR--LRTDLDAAADADGHAVTMMTIHSSK 578

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L FD +   G+ E ++P   + +       +  L                 +    + L
Sbjct: 579 GLEFDAVFSAGMEESLFPHTNSSHDEAGLEEERRLA-------------YVAITRARKKL 625

Query: 698 IYTRSLRE----NNIPTIASRWLQRLLVLGGT 725
             T +              SR++  +      
Sbjct: 626 YLTCAATRKMYGETNANPVSRFVGEIPSDLRH 657


>gi|221068754|ref|ZP_03544859.1| UvrD/REP helicase [Comamonas testosteroni KF-1]
 gi|220713777|gb|EED69145.1| UvrD/REP helicase [Comamonas testosteroni KF-1]
          Length = 827

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 73/708 (10%), Positives = 172/708 (24%), Gaps = 107/708 (15%)

Query: 50  YVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
              T +A +E+ +    +     +      I +   +      A                
Sbjct: 80  VTFTNKAAKEMLTRLSAMLPYNVRGMW---IGTFHGLCNRLLRAHYQA------------ 124

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
                ARL   ++                   +         K L   I   + E  +  
Sbjct: 125 -----ARLPQAFQILDTQDQLSAIKRLCKQFNVDDERFPP--KQLMYFIAGCKEEGMRPG 177

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HL 222
           D+ A   +                 + + E+             +       +     H 
Sbjct: 178 DVVATDPDTRKK---------VELYQLYEEQCQREGVVDFGELMLRSYELLRDDVHLRHH 228

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVA------NHPNGAIVLPGLDCHIPTAIWNTITE 276
            +     I++     +     + +  +A       + + A V+   D       +     
Sbjct: 229 YQRRFQHILVDEFQDTNKLQYQWLKQLAGDDVGGRYESAASVIAVGDDDQSIYAFRGARV 288

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            +                        L+        + + +N +                
Sbjct: 289 GNMADFIREFDVKNQI---------KLEQNYRSYSNILDCANALI--------------- 324

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALIT 393
               N++ L   +   Q     V + EA ++  EA  +   ++  +  +    ++ A++ 
Sbjct: 325 --SHNSNRLGKNLRTSQGPGEPVRIYEAPSDLAEAAWMVDEIKQLVKNDGFTRQEIAVLY 382

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R ++  L    I   +  G+            + L  +   +D  +   +V  P
Sbjct: 383 RSNAQSRVIESALFNSRIPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFLRVVNFP 442

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G     + +        +L     +        L                   R  
Sbjct: 443 ARGIGARTIEVLQDTARSSGTSLSDAVTAVGGAAGTKLQGFVAQIDVLREQTQGRTLREI 502

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            E  E    L++H           +  +       S     +        + LDE +  P
Sbjct: 503 IETVEEQSGLIEHYRNEKEGADRIENLQELVTAAESFV-TQEGFGRDAVAMPLDEQQNAP 561

Query: 574 NLWF--------------EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
            L                +E  +  +   + ++   +    + ++   +   L  G+   
Sbjct: 562 QLSQSPVSQGLDPNQPLLDEALRAPAGTAASMVNADTGETLSPLQAFLVHAALEAGD--N 619

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                   + ++    S+ L FD + +GG+ E           F       D      E+
Sbjct: 620 QAQAGQDAVQLMTVHASKGLEFDAVFIGGVEE---------GLFPHENAMMDRGGLEEER 670

Query: 680 YIGQAAHDFEMANGTRHLIYTRSL----RENNIPTIASRWLQRLLVLG 723
            +   A    +    + L  + S            + SR+   L    
Sbjct: 671 RLAYVA----ITRARKRLYLSHSQTRMLHGQTRYNVKSRFFDELPEEA 714


>gi|84685773|ref|ZP_01013669.1| Helicase, UvrD/Rep family protein [Maritimibacter alkaliphilus
            HTCC2654]
 gi|84665866|gb|EAQ12340.1| Helicase, UvrD/Rep family protein [Rhodobacterales bacterium
            HTCC2654]
          Length = 1119

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 94/848 (11%), Positives = 210/848 (24%), Gaps = 109/848 (12%)

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             L      ++ + E  E + + + AL         +   DF     + + ER        
Sbjct: 292  DLGDTAETLLALAEVVETEVDRVKALAVIDRT---VALHDFAHPFVRMYEERKARNGWLD 348

Query: 207  PVGYQIALMRAEAEH--------LMKGTKGPIIIAGSTGSIPATARLMSTVAN---HPNG 255
                 +                  + G    I++  +  + P+  R++ ++A       G
Sbjct: 349  FDDLILRASALLNASDVAQWVLFRLDGGIDHILVDEAQDTSPSQWRVIDSLAREFMSGEG 408

Query: 256  AI------VLPGLDCHIPTAIWNTITEKSTNITSSNT---------TYSTHPQ----YSL 296
            A       +    D       +                             P      S 
Sbjct: 409  AHADREWSIFVVGDPKQSIYSFQGADPDEFASMRDAFDEKLRQIERPLQQMPLEYSFRSS 468

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSM-VISKSFLPPDTSDMRNTDILENKIPNIQKC 355
              +L  +D+  +DV  LG               +  L P    ++  +      P     
Sbjct: 469  PAILTAVDVTLDDVDGLGGTKPHHRAFHGDRPGRVDLWPAIEPVKEDEPRPWDDPLDVAA 528

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDE-------------NKKKSALITADRNLARRV 402
             +D  +  A+N   E   IA  +                         L+    +L   +
Sbjct: 529  PTDHTVQLAENIAGE---IARMIEEEHVPATEKGETGFRPVVPGDILILVQRRSDLFHHL 585

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                   G+ I  +  + +   +    LT+LL+ +    D +++A++++ PL      E 
Sbjct: 586  IRACKSRGLPIAGADRLRIGGEMAVKDLTALLSFLATPEDNLSLASVLRSPLFGLSEDEL 645

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
            Y         L     +     +++  S + D+    +    +    +R       L  L
Sbjct: 646  YRLAYGREGYLWRALWDSGHRRVVEALSDLRDQADFLRPYDLIDRVLTRHDGRRLLLGRL 705

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
              +        L      +     +L+                          W + E  
Sbjct: 706  GAEAEDGIDAMLAQALAYERVEVPSLT----------------------GFLTWLDTEDV 743

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             +             +  +  + ++    ++   T +P  + S  +          L  +
Sbjct: 744  EIKRQMDSDAREIRVMTVHGAKGLESPIVILPDTTKRPVRDLSDLVV---------LENN 794

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
             +      +        K    ++  +  + L               M      LI   +
Sbjct: 795  VVWRPAAPDMPSVLALKKEEARTKGAEERMRLL-----------YVAMTRAESWLIVAGA 843

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
                   + +   L R  +                        D+   +           
Sbjct: 844  GDVGKEASDSWHGLVRDGLTKLDAVPRGFPSGTGGLRFQVG--DWPAGERRNVTADADRE 901

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIK 821
             +    +   +  +     P +    +  K+        D D   R G   H ++   + 
Sbjct: 902  PDPPDWSLVAAPHRDPAPKPISPSDLKGAKVVPGAVEGLDGDAAKRRGRQIHRLLE-FLP 960

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                ++ P     +    +       L   +             + L+           +
Sbjct: 961  TYPREDWPATARALLAFGEDAASDAELAELLAEA---------TAVLDSPALAPLFERGV 1011

Query: 882  FVNIPAKMAIE-SIGIHLTGFADRIDLLKSGFVDITDYKTG--DNPKKETAQKLIDPQLS 938
               +        S    L G  D + +     V   D+K+   +    E   + I  QL 
Sbjct: 1012 LSEVEITGPAGSSGEKRLHGIIDLLVIEPD-RVLAIDFKSNLTEPDAAEAIPEGILAQLG 1070

Query: 939  LEAAALKA 946
               +AL A
Sbjct: 1071 AYESALSA 1078


>gi|77409591|ref|ZP_00786269.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1]
 gi|77171802|gb|EAO74993.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1]
          Length = 759

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 89/706 (12%), Positives = 205/706 (29%), Gaps = 126/706 (17%)

Query: 46  SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLL-----LSYNL 99
           ++     T +A +E+R          + T+   I +   +       +        ++ +
Sbjct: 54  NILAITFTNKAAREMRERAIALNPATQDTL---IATFHSMCVRILRREADYIGYNRNFTI 110

Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
              V   ++   + R+I                ++      S    I  AKN  D++D I
Sbjct: 111 ---VDPGEQRTLMKRIIKQLN-----------LDTKKWNERSILGTISNAKN--DLLDEI 154

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             E++  +    +               +    K + E L    A       +  +R   
Sbjct: 155 AYEKQAGDMYTQV---------------IAKCYKAYQEELRRSEAMDFDDLIMMTLRLFD 199

Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           ++       +     I +     +  A  +L+  +A+      V+   D       W   
Sbjct: 200 QNKDVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGA 257

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             ++            +PQ  +  L +     ++ ++   NV N    R           
Sbjct: 258 DMQNILDFEK-----DYPQAKVVLLEENYRSTKKILQAANNVINHNKNRRPK-------- 304

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSAL 391
                        K+         +    A+NE+EEA+ +A  +   + E     K  A+
Sbjct: 305 -------------KLWTQNDEGEQIVYHRANNEQEEAVFVASTIDNIVREQGKNFKDFAV 351

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +      +R ++  L +  I   +  G    +      + + LN +   +D ++   +V 
Sbjct: 352 LYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLNILANTSDNISFERIVN 411

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P    G       R+                             A ++N + +    + 
Sbjct: 412 EPKRGVGPGTLEKIRS----------------------------FAYEQNMSLLDSSSNV 443

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
           +    K  A   V  +   I  L +   +   T    ++ D T           L     
Sbjct: 444 MISPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQNTL---ES 500

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              +   EE  +++  F    E     +         +  L           +++ + ++
Sbjct: 501 QARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAEVTLM 560

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + L G+ EGV+P + A              ++ A++   +    +   
Sbjct: 561 TLHAAKGLEFPVVFLIGMEEGVFPLSRA--------------IEDADELEEERRLAYVGI 606

Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                +++     TR+L         +R+++ +             
Sbjct: 607 TRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDELIQHQGLARP 652


>gi|315181035|gb|ADT87949.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio furnissii NCTC
           11218]
          Length = 1173

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 101/931 (10%), Positives = 235/931 (25%), Gaps = 110/931 (11%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+    +  G  + +      L      +    +L +       +   
Sbjct: 34  QILVQSPGMSQWLKMALAQELGVAANLD---FPLPATFIWEMFTQVLPNVPKRSAFNKEA 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK-- 165
              +L  L+        D          L      +    LA+ +ADI D          
Sbjct: 91  MTWKLMELLPS----QLDQDVFAPLRRYLQDDTDQSKLYQLAEKIADIFDGYLVYRPDWI 146

Query: 166 --WEDLHALKNEKYGMWWLLAA-DFLKIA-----SKYWTERLVELNASSPVGYQIALMRA 217
             WE   ++        W       L          ++    +  +    + +       
Sbjct: 147 AHWEAGESVAEIDGEHPWQPVLWKALYDYTLAQGQSHYHRANLYQSFIDALAHIDLTHD- 205

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN----- 272
             E L       + I G +   P     +  +  H +  ++      H    I +     
Sbjct: 206 --EALRAALPKRLFIFGISSLPPRYMDALKALGEHIDVHLMFTNPCQHYWGDIRDRKYLA 263

Query: 273 TITEKSTNITSSNTTYSTH-------------------------PQYSLAKLLDFLDIKR 307
            +  +       +    TH                          Q     LL  +    
Sbjct: 264 RVESQRRKQLVLHPNAETHTFTVAGEVSPLKGELDDYAGDELHTAQAVGNSLLASMGKLG 323

Query: 308 EDVKRLGNVSNEMY-------GRSMVISKSFLPPDTSDMRNTDILENKI---PNIQKCFS 357
            D   L   S+           R  ++ +        +    D L +     P +     
Sbjct: 324 RDNLYLLAQSDNEEHELFIDVPRDSLLHQLQADILHLEEHQDDTLLDSSAHKPALPHGDR 383

Query: 358 DVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLEL-----TR 408
            + L    +   E   +   L        +   +   ++ AD N        +       
Sbjct: 384 SLTLHACHSPMREVEVLHDELLAMFDRDPELKPRDIIVMVADINAYSPYIQAVFGNAPGE 443

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSR 466
             I   IS       +   +    L+           +  L++ P  +A+F         
Sbjct: 444 RFIPYSISDRTADQESPILNAFMQLVALPQSRCLASELLELLETPAMMARFALDASEFDT 503

Query: 467 AKNALELVALRGNKNSYDIMDLK-----------SLVLDRIATQKNNTHVPHWQSRLSEE 515
           AK  +E   +R   N     + +            +    +     ++         +  
Sbjct: 504 AKRWVEESGIRWGLNDATAQEFELPQTHQNTWQFGIARMLLGYAMPSSVGLFEAGGHAMA 563

Query: 516 DKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                  +   +   +     T    +        I  W +L  + L +    +      
Sbjct: 564 PYNEVQGMSAELAGKLAHFIDTISDYRQRLAQTQPIEAWRELLSSLLDDCFSVDLDGEMA 623

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           L  +    TL++L  ++ + G     +       +   + G  V  +      +     +
Sbjct: 624 L--KSIRDTLAALKEQLADAGYADAISPAIMGQYLHDKLSGTRVSQRFLAG-QVNFCTLM 680

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
             R + F+ + L G+N+GV+P++     F     ++    ++             M +  
Sbjct: 681 PMRSIPFNVVCLLGMNDGVYPRSMPPEGFDLMNGRTRPGDRSRRDDDRYL-FLEAMLSVQ 739

Query: 695 RHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             L  +   R   +N   + S  +  LL     ++     +         R ++      
Sbjct: 740 HTLYISYVGRSIQDNTERVPSVLVTELLEYCQQNYCLAGDEALPSDESGARLIEQLQFTH 799

Query: 753 HYKRPKP-------------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                 P             + P   +  T S +  + L +          L L  +  F
Sbjct: 800 AMVPFSPQAFLTDVGSYAKEWLPAALRQGTASGTFHRALDDYLLDAVYPLELDLVELQRF 859

Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
            + P        F+  +  + +  +     +    +  +         L   ++      
Sbjct: 860 WRLP----VQYFFNRRLKVVFEPPLPVMEDDEPFALGGLASYQLRDALLDGLLNAPSAQA 915

Query: 860 FHKISHSFLEHEEKIQSSIEKIFV--NIPAK 888
             ++   F  ++++       +     +  +
Sbjct: 916 RDEVLAQF--NKQQRAQGKLPVGAFGELEFE 944


>gi|54310115|ref|YP_131135.1| exonuclease V subunit gamma [Photobacterium profundum SS9]
 gi|46914554|emb|CAG21333.1| putative exodeoxyribonuclease V [Photobacterium profundum SS9]
          Length = 1159

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 106/881 (12%), Positives = 218/881 (24%), Gaps = 106/881 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ +LL   +  N   +P  P       I V +    Q L+ E     G  + +     
Sbjct: 11  DLLKSLLVELIRLNPLDNPFEPE-----QILVQSPGMSQWLKMELATSFGIAANLE---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      K    +L      P  S   +     +L+ +   +L     +       + P
Sbjct: 63  PLPATYIWKMFTQVLADV---PERSAFNKEAMTWKLMEVLPKQLGLPEFEPLKRYLENDP 119

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKYGMWWLLAADFLKIAS 192
            S      LA+ +ADI D       +W       E +  L +E     W        +  
Sbjct: 120 ESL-KIYQLAEKIADIFDQYLVYRPEWIQQWEAGEIVAELGDEH---PWQPILWQ-ALYD 174

Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVA 250
           +         + ++   + I  +   A    L       + + G +   P     ++ + 
Sbjct: 175 QTLALGQSPYHRANLYEHFIDTLDNYASSGTLPANLPKRLFVFGISSLPPRYLDALAALG 234

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNI----------------------------- 281
            H +  ++      +    I +                                      
Sbjct: 235 EHIDVHLMFTNPCRYYWGDIRDRKHLARLAANQRVTIKQLNVSSDGILHGDENVSDENVA 294

Query: 282 -----TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL-----------GNVSNEMYGRSM 325
                  ++     H       LL  +     D   L           G V  E      
Sbjct: 295 VLKDTDENHYDDEMHNDVVGNSLLASMGKLGRDNMYLLSEMQVNEVDAGFVDIEPDSLLH 354

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
            I    L  +           +    I      +++    +   E   +   L    +  
Sbjct: 355 AIQADILNLEDRQNDQILDSSDHKFPISDGDMSLSIHACHSPMREVEVLHDNLLAMFETE 414

Query: 385 -----NKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLL 434
                  +   ++ AD N        +         I   IS                LL
Sbjct: 415 TAKGLKPRDVIVMVADINAYSAAIQSVFGNAPGNRYIPFSISDRTAEQENPILLAFMRLL 474

Query: 435 NAIFKLNDFMAIATLVKHPLAKFG--FPEKYLSRAKNALELVALRGNKNSYDIMDLK--- 489
                  +   +  L++ P       F      + K  +E   +R   +       +   
Sbjct: 475 TLPESRCNASELLELLEVPAVMNKFGFDSNSFEKIKRWIEEAGVRWGLDEKTACQFELPE 534

Query: 490 ----SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNST 544
               + +                         E    L   +   +     +  + +   
Sbjct: 535 QNQNTWLFGIQRMLLGYAMPHDAGLFDGISAYEQIQGLDAELAGQLAGFIDSLISYREQL 594

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                +S WT L    L +    E      L  +     L  L  ++ + G     +   
Sbjct: 595 AQPQCVSSWTDLLNQLLDDFLAVELDGELVL--KSIRDNLHRLHEQLADAGYQSLISPAV 652

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
               +   + GE V  +      +     +  R + F  + L G+N+G +P+N A   F 
Sbjct: 653 LTQYLQDKLSGERVSQRFLAG-QVNFCTLMPMRSIPFKVVCLLGMNDGAYPRNIAPEGFD 711

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLV 721
               ++    ++            E     +  L  +   R   +N   + S  +  L  
Sbjct: 712 LMNGRTKAGDRSRRDDDRY--LFLEAIQSAQESLYISYVGRSIQDNAEKVPSVLVSEL-- 767

Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                        G   L   +      ++         P         + S   + +  
Sbjct: 768 --IEYCQQGYCLEGDEALPVDQSAKRLKEELLVHHHPLVPFSPTAFSGDNPSFAAEWL-- 823

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI-ITELIK 821
           P A       K   +     +P  +D+G +     +    +
Sbjct: 824 PAAARHGEANKAFQLTALDAEPMVSDQGLVLELAELQRFWR 864


>gi|221641019|ref|YP_002527281.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131]
 gi|221161800|gb|ACM02780.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131]
          Length = 1106

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 88/876 (10%), Positives = 196/876 (22%), Gaps = 113/876 (12%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
             LA L  +                      +      LA  L  ++  +E        L 
Sbjct: 267  TLAGLEGVLLTGASAKEPYTAKLGSFPTKATRGALGPLADRLDALMRRVEAARPVRCCLL 326

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHL 222
            A +  +          F  +    +  R                        +       
Sbjct: 327  AAERARLIH------AFAGVFLPLYQARKASRGWLDFDDLIQRAKGLLTDPSVAQWVLFR 380

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNG--------AIVLPGLDCHIPTAIWNTI 274
            + G    I++  +  + P   +++  +A               +    D       +   
Sbjct: 381  LDGGIDHILVDEAQDTSPDQWKVIELLAQEFTSGRGAREVERTIFVVGDKKQSIYSFQGA 440

Query: 275  TEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               + +   +                  L        I R           +  G  +  
Sbjct: 441  DVAAFDRMRAEFGERLAGARRRLEELDLLHSFRSSPAILRLVDLTFDEPRRQALGGEVRH 500

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE-ADNEREEAISIAIALRMSLDE-- 384
                            +   + P  +  F  V L+    +    A  +A  +R  ++   
Sbjct: 501  IAFRGDMPGRAELWPLVEAAEEPEPENWFDPVDLVSDEHHAARLARQVATRIRAMIEAGV 560

Query: 385  ------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                              L+    ++   +        + I  +  + L   L    L++
Sbjct: 561  QIPQPGGFRPVAAGDFLILVQRRSDIFGEIIRACKEARLPIAGADRLKLGAELAVRDLSA 620

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            LL  +    D +++A +++ PL  +   E +        E    R   +          +
Sbjct: 621  LLAFLATPEDDLSLAAVLRSPLFGWSEGELFDLAHGR--EGYLWRRLYDREAAHPGTVAI 678

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            L  +  Q +         R          LL     +    +    +   +         
Sbjct: 679  LRDLRDQADFLRPFDLIERALTRHDGRRRLLARLGEEAEDGIDELLSQALAYERT----- 733

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                                   W + +   +             +  +  + ++    +
Sbjct: 734  -------------DVPSLTGFLTWLQTDEVEVKRQMEAAGGRIRVMTVHGSKGLEAPIVI 780

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            +     +   E+     + G           +      E       A+    +R    +L
Sbjct: 781  LPDTADRKPRERDELFTLEGGA--------RVWKTPAAESPPQIAAAREARRARDAAENL 832

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             L               +A          +         A   L R  +          +
Sbjct: 833  RL-------------LYVAMTRAQCWLIAAAAGKLETGGAWHDLIRQGMEAAGA---ERR 876

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
              G   LD         +                    +       +  P A+   + L 
Sbjct: 877  DDGALVLDEGLWPPAAPQASAAAAAARPVLPAWALAPAAEPPAAPEVLSPSALGGAKALP 936

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
             D +P  +        G+  H ++  L              L+  + D            
Sbjct: 937  GDAMPTEE----ALAHGSAVHRLLEHLPLHPPEGWEAAARGLLPDLPDVAP--------- 983

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
                       + + L  E   ++ +    + +     +      L+G  DR+ +     
Sbjct: 984  -------VLAEARAVLSAEHLAEALVPHALLEVAVTAEVAGR--RLSGTIDRLVVEPD-R 1033

Query: 913  VDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
            V   DYKT      + E   + I  Q+   A AL  
Sbjct: 1034 VLAVDYKTNRVVPDRPEEVPEGILRQMGAYAEALAQ 1069


>gi|326403648|ref|YP_004283730.1| double-strand break repair helicase AddA [Acidiphilium multivorum
            AIU301]
 gi|325050510|dbj|BAJ80848.1| double-strand break repair helicase AddA [Acidiphilium multivorum
            AIU301]
          Length = 1157

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 97/841 (11%), Positives = 195/841 (23%), Gaps = 78/841 (9%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174
            L          I  +          ++      L+  LA ++  I+  E+  +       
Sbjct: 307  LDAEEPTLKATIEAEQGRLLRAKDRLAARRLADLSAALAQLVLPIQAAEQSAKQ--GSAR 364

Query: 175  EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234
              Y      AA+ L      W    ++            +                    
Sbjct: 365  FDYADLIARAAELLVDPGAAWVLYKLDGGIDHI--LLDEVQDIAPAQWEVIDAIVAEFFA 422

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             TG+   TAR +  V +         G D     A    I  + +   +     S    +
Sbjct: 423  GTGARDGTARTVFAVGDRKQSIYSFQGADLASFDAWRAGIGARVSAAGARWHEGSLATSF 482

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
                 +  L  K  +     +            +       +  +      +        
Sbjct: 483  RSTAPILSLVDKVFERGPARSGVVMPDEVLAHGASRAGQAGSVTLWPLVPADPDPELAAW 542

Query: 355  CFSDVALIEADNEREEAISIAIAL-----------RMSLDENKKKSALITADRNLARRVK 403
              ++    +A   R  A S+A  +           R  +        L+         + 
Sbjct: 543  APAETYAEQASARRRLARSVAGWIAANVGTMRLESRGRVLAPGDILILVRQRNEFGVALT 602

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L   G+ +     + L+ T   + L +L  A+    D + +AT++  PL      E  
Sbjct: 603  RALKEAGVKVAGLDRMVLTETRAVADLIALARAVLLPEDDVELATVLASPLGGLSDEELM 662

Query: 464  LSRAKNA--LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                     L                 + L+ +  A     T    +   L       A 
Sbjct: 663  NLALDRKGTLRDALFTRADEHAAFAAARDLIAEAQARADFVTPYRFFAEVLGP-MGGRAR 721

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            LL     +   PL            + + S                   +      +   
Sbjct: 722  LLARLGPEAAEPLDELLATALDYGTHEAPS------------------LQGFLAALDAAA 763

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
              +        ++   +  +  + +     ++   T +   E    L+ +   +      
Sbjct: 764  AEVKREAEAAGDSVRLMTVHGAKGLQAPLVILPDTTGQRGKEARDLLYWIDAPQGGG--- 820

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
                         P    +    S  ++  L   +   +       +         +   
Sbjct: 821  -----------EVPIFCPRADMRSAAVRQALASASDRGFEEYNRLLYVALTRAEDHLIVC 869

Query: 702  SLRENNIPTIASRW------LQRLLVLGGTDFFDNLK-------KRGQCYLDWTRKLDYT 748
                 +       +       +RL  +   +    L               D    +   
Sbjct: 870  GAATKSRLPETCWYESVRAGFERLDGVAEIEAEPPLDGTMLYYAAPQSAPPDRLAAISTA 929

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK--DPDRT 806
            T  P      P     A P       I +L+    A      L        +        
Sbjct: 930  TAAPLPGWIGPETGWRAAPPPEPKQRIDRLVPSRSAEGESTGLAAASPLAGRGTGREAAM 989

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
             RG L H ++  L               + Q      +          + +         
Sbjct: 990  ARGRLIHALLQHLPDLPPGDRREAARRYLAQPGHRLGD----------VEQTDVIDAVFG 1039

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
             L+H +             P  +A    G+ + G  DR+ +L    V I DYKT   P  
Sbjct: 1040 VLDHPDLTALFGPASRAEAP--IAGIVGGVEIGGLIDRLAVLPD-RVLIADYKTDRQPPA 1096

Query: 927  E 927
            +
Sbjct: 1097 D 1097


>gi|187251691|ref|YP_001876173.1| UvrD/REP helicase [Elusimicrobium minutum Pei191]
 gi|186971851|gb|ACC98836.1| UvrD/REP helicase [Elusimicrobium minutum Pei191]
          Length = 1074

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 96/756 (12%), Positives = 194/756 (25%), Gaps = 107/756 (14%)

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            I I     + P    L+  +A     A  +       P  ++     K +         +
Sbjct: 364  IFIDEFQDTDPVQGELLLFLAEEEKSAAKVWNEIKLAPGKLFVVGDPKQSIYRFRGADIT 423

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
             +  ++   L     I         +     +            P           ++  
Sbjct: 424  AYQLFTELILKQGGMICYLQTNFRSDAQIIDFVNCAGFKLIEERPGFQAKYVPINAKDGA 483

Query: 350  PNIQKCFSDVALIE-----ADN-EREEAISIAIALRMSLDE---------NKKKSALITA 394
            P  +    DV +       AD+    +A   A  +  +  +           K  A++  
Sbjct: 484  PCDKDAVKDVIISSEQPQSADDYRHNQAEFTAKWIAENAGKLKLSNGSVLQYKDIAVLMR 543

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
              N        L R+G+   +       T    + + +LL+ +    D  A+A +++ P 
Sbjct: 544  TSNAFNIFTEALKRYGVKYTVEEDKNFYTAQEITDILNLLSLLDNPYDKNALAGVLRSPF 603

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              F                                           ++     ++ + ++
Sbjct: 604  GGFN------------------------------------------DDEIYQIFKQKFTD 621

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC-LQNVCLDEHRKLP 573
               +      + +      L T K           +      T+   L  +  +  + + 
Sbjct: 622  ISAKKLPKGFERLGGFYKTLNTLKGFVGRISTGALVEKILSSTMFAELSQLAYNGEQTIS 681

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            NL                 E  + +        D+  +           E  S + ++  
Sbjct: 682  NLQKFAALAAGDQN-----ENANSLGQFLANSKDLARQARGEGESPLADEFLSAVSVMTI 736

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG----------- 682
             +S+ L F  + L  +      K    +      M        A+  +            
Sbjct: 737  HKSKGLEFPVVFLADMFRQESVKQNKYSYSWFYDMHGLRAGPYADANLAFLEVQQLWHSK 796

Query: 683  --QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
              +A   +      +  ++          T  +R L+   +         L      +  
Sbjct: 797  SEEARILYVALTRAKEKLFILGNNTETKKT-PARHLRNAGLWPELVTVKELPNDKLTHPL 855

Query: 741  WTRKLDYTTKQPHYKRPKPFPPL--------EAQPRTYSFSEIKQLINDPYAVYARRILK 792
                  Y        +    P          E   R    SEI + I +     +   L 
Sbjct: 856  QLEYFPYAEPDQFIYKINFTPEDGGVLKNAGEWFNRWAKRSEIYEKIKEEALFISPSSLN 915

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITEL-IKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
                       +    GTL H ++     K  I       +    QI D+   KE     
Sbjct: 916  KHEAVFAGSSDNAALLGTLCHKMLENYDFKTVITPEQTAASAASLQIEDNDIIKE----- 970

Query: 852  IDIIWRHLFHKISHSFLEHEE-KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
                      +I ++F   E  K  +S+  +   +P     E   I ++G  D I + + 
Sbjct: 971  --------AAEIINNFTVSEVCKKLASMRVLAREMPFTY-FEEGKI-ISGTVDVI-VEQE 1019

Query: 911  GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            G + + DYKT   P           QL     A+K 
Sbjct: 1020 GEIFVLDYKTDKTPDPSK----YALQLGAYKRAVKK 1051


>gi|238760479|ref|ZP_04621616.1| Exodeoxyribonuclease V gamma chain [Yersinia aldovae ATCC 35236]
 gi|238701321|gb|EEP93901.1| Exodeoxyribonuclease V gamma chain [Yersinia aldovae ATCC 35236]
          Length = 1028

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/680 (10%), Positives = 162/680 (23%), Gaps = 65/680 (9%)

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKY 194
           LS          LA  +AD+ D       +W +     +              L +    
Sbjct: 20  LSDDDDKRKIHQLAARVADLFDQYLVYRPEWLDSWERGQLIDNLDEAQQWQALLWVELTR 79

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKG--TKGPIIIAGSTGSIPATARLMSTVANH 252
           +T +L +             +R   E  +        + I G +   P   + +  +  H
Sbjct: 80  YTRQLEQPEW-HRANLYQRFIRTLHESDVCPVGLPKRVFICGISALPPVYLQALQALGKH 138

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------THPQ 293
            +  ++      +    I +                                       Q
Sbjct: 139 IDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYRESIELNLFRNPEQAEQLFNADGEQ 198

Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSD 338
                LL        D   L +  +++      +                +         
Sbjct: 199 DLTNPLLASWGRLGRDHMFLLSQVDDIQEVHAFVDIEPDNLLQGIQHDILELEDHAVIGT 258

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI----ALRMSLDENKKKSALITA 394
              T         +      ++L    + + E   +       L  + +   +   ++ A
Sbjct: 259 SPETLAHSGGKRLLALSDRSLSLHVCHSPQREVEVLQDSLLGLLAANPELTPRDIIVMVA 318

Query: 395 DRNLARRVKLE-----LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           D +                  +   IS               +LL+          +  L
Sbjct: 319 DIDSYTPYIQATFGNASGERYLPFAISDRKASQAHPALQAFITLLDLPQSRFTSEHVLAL 378

Query: 450 VKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQK 500
           +  P     F   E  L R ++ +    +R   +  ++ +L        +          
Sbjct: 379 LDVPALANKFGIAEDDLRRLRHWVGESGIRWGLDDDNVRELSLPATGQHTWHFGLTRMLL 438

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKLTVT 559
                            + +  L   +   +   L+     +        +S+W  L   
Sbjct: 439 GYAMDSTAGDWQGVLPYDESSGLAAELAGQLADMLMQLSQWRQRLSEPRVLSEWLPLCRQ 498

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
            L      ++     L   E  +    + S  I      +       D +   +D E + 
Sbjct: 499 LLDTFFEPDNDTEAVLVLIE--QQWQKVISYGIAAQYPERVPLNLLRDDLAGRLDNERIS 556

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
            +      +     +  R + F  + L G+N+GV+P+      F   +M   +      +
Sbjct: 557 QRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMAKQVRRGDRSR 613

Query: 680 YIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                    E      + L  +   R     +     +  L+         + +  G  +
Sbjct: 614 RDDDRYLFLEALISAQQQLYISYIGRSIQDNSKRYPSV--LVSELIEYISQSYRLPGDEW 671

Query: 739 LDWTRKLDYTTKQPHYKRPK 758
           L          +      P+
Sbjct: 672 LSADDSAGRVIEHLLCWHPR 691


>gi|302533531|ref|ZP_07285873.1| RecB family exonuclease [Streptomyces sp. C]
 gi|302442426|gb|EFL14242.1| RecB family exonuclease [Streptomyces sp. C]
          Length = 294

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 80/283 (28%), Gaps = 32/283 (11%)

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                          ++P + S S     +  P     R I +L              RGT
Sbjct: 3    TTPGAGSADASSGASRPTSLSPSRAGDFMQCPLLYRFRVIDRLPEK-----PSAAATRGT 57

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID----------IIWRHLF 860
            L H ++  L     ++ T      +         +                    W    
Sbjct: 58   LVHAVLERLFDHPAHERTVPRAKELLPGQWERLLEAKPELAELFPEGDGGAGLARWLSEA 117

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
              +   +   E+  +  +E +      +  +ES G+ L G  DR+D+  +G V I DYKT
Sbjct: 118  EALVERWFTLEDPTR--LEPVEREFFVEAELES-GLRLRGIIDRVDVAATGEVRIVDYKT 174

Query: 921  GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
            G  P+     +    Q+   A  +       +       L  + L     +         
Sbjct: 175  GKAPRP-EYAEGALFQMKFYALVVWR-----LRQVVPRRLQLVYLGSGDVLTYDPVPAD- 227

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
                   E+  + L  +   ++   +      R ++      +
Sbjct: 228  ------LERVERKLYALWEAIREATETGDWRPRPTK-LCGWCD 263


>gi|253687308|ref|YP_003016498.1| exodeoxyribonuclease V, gamma subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753886|gb|ACT11962.1| exodeoxyribonuclease V, gamma subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 1132

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 116/978 (11%), Positives = 244/978 (24%), Gaps = 125/978 (12%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            +L   +VE  +  PL         I V +    Q L+ E     G  + I      L  
Sbjct: 11  DILKRLMVELIKRQPLA-DPFQQEVILVQSPGMAQWLQIELAGHFGIAANIQ---FPLPG 66

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
           V        +L         S      +L  L+      L +          L    +  
Sbjct: 67  VFLWNMCRHVLPDIPKESAFSKDAMTWKLMHLLP----DLLEQPDFSALNHYLQDDDNQR 122

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVEL 202
               LA  +AD+ D       +W        +        L    L  A   +T  L + 
Sbjct: 123 KLHQLAGRVADLFDQYLIYRPEWIKAWQEGKQVDDLGGNQLWQSALWRALVDYTRELAQP 182

Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGP--IIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                       + A  +        P  + I G +   P   + ++ +A H +  ++  
Sbjct: 183 EWHH-AILYQRFINALEQAKTCPKGLPPRVFICGISALPPIYLQALNALARHIDVHLLFT 241

Query: 261 GLDCHIPTAIWN------------------------TITEKSTNITSSNTTYSTHPQYSL 296
               H  + I +                        T         +         Q   
Sbjct: 242 NPCRHYWSDIQDYKFLAKLKARNRRLHRFDGVQTDETRPLFLDPGQAETLFNDDGNQLIN 301

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGR---------------SMVISKSFLPPDTSDMRN 341
             LL        D   L    + +                     I +       +    
Sbjct: 302 NPLLASWGKLGRDNLYLLAELDNVQEVGAFVESDGENLLQTLQRDILELEDHAVVAVSHE 361

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRN 397
           T     +   +      V      + + E   +   L   + ++     +   ++ AD +
Sbjct: 362 TQNSSMQKRLLALDDRSVDFHACHSPQREVEVLHDRLLAMMADDPQLMPRDVIVMMADID 421

Query: 398 LARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                   +      +  +   IS             + SLL+          +  L++ 
Sbjct: 422 SYTPFIQAVFGNAPDKRYLPFAISDQRARHAHPALQAVISLLDLPTSRFTAEQVLALLEV 481

Query: 453 PLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNT 503
           P    +FG  E+ L R +  +    +R   +  ++ DL        +             
Sbjct: 482 PALAARFGIQEEGLRRLRLWVVESGVRWGLDDDNVRDLMLPPTGQHTWRFGLTRMLLGYA 541

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                         + +  L+  +   +  L+      +        + DW  L    ++
Sbjct: 542 MDSQVGDWQGVLPYDESSGLIAELAGQLAELLMQIHQWRQRLSQPRVLVDWLPLCRELIE 601

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                +      L   E+          +      +  +     D ++R +D E +  + 
Sbjct: 602 TFFDADSETEAALALVEKQWQYVIGMGTMAHYPQQVPISR--LRDELSRRLDQERLSQRF 659

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
              + +     +  R + F  + L G+N+GV+P+      F   +M   +      +   
Sbjct: 660 LAGA-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMGRKIKRGDRSRRDD 716

Query: 683 QAAHDFEMANGTR-HLIYTRSLRENNIPTIASR---------WLQRLLVLGGTDFFDNLK 732
                 E     +  L  +   R     T             ++ +  VL G +  D   
Sbjct: 717 DRYLFLEALLSAQYKLYISYIGRSIQDNTRRYPSVLVSELTEYIAQSYVLPGDETLDIDS 776

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------------------------ 768
              +      R+            P P P   A                           
Sbjct: 777 SAERVMKHLCREHSRMPFDADNFLPAPQPLSFAAEWLAAANRKGEAQPDFDREALSERTT 836

Query: 769 --TYSFSEIKQLINDPYAVYARRILK----LDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
               S  ++K+    P   + +  L     L       ++P   D    +      L   
Sbjct: 837 DSDVSLDDLKRFYRHPVRAFFQLRLGVSFMLHSDELLDEEPFVVDSLNRYQLNSELLNTL 896

Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
               +T ++    +         E        I+     +          +++  +    
Sbjct: 897 INEGDTEKLYRRARAAG------ELPYGAFGEIYWQEQQQEMAQLAA---RVRDELTPSL 947

Query: 883 VNIPAKMAIESIGIHLTG 900
             +  ++ I   G+ ++G
Sbjct: 948 S-VSREVDILLDGVRVSG 964


>gi|148260455|ref|YP_001234582.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5]
 gi|146402136|gb|ABQ30663.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5]
          Length = 1157

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 94/840 (11%), Positives = 195/840 (23%), Gaps = 76/840 (9%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174
            L          I  +          ++      L+  LA ++  I+  E+  +       
Sbjct: 307  LDAEEPTLKATIEAEQGRLLRAKDRLAARRLADLSAALAQLVLPIQAAEQSAKQ--GSAR 364

Query: 175  EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234
              Y      AA  L      W    ++            +                    
Sbjct: 365  FDYADLIARAAQLLVDPGAAWVLYKLDGGIDHI--LLDEVQDIAPAQWEVIDAIVAEFFA 422

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             TG+   TAR +  V +         G D     A    I  + +   +     S    +
Sbjct: 423  GTGARDGTARTVFAVGDRKQSIYSFQGADLASFDAWRAGIGARVSAAGARWHEGSLATSF 482

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
                 +  L  K  +     +            +       +  +      +        
Sbjct: 483  RSTAPILSLVDKVFERGPARSGVVMPDEVLAHGASRAGQAGSVTLWPLVPADPNPELAAW 542

Query: 355  CFSDVALIEADNEREEAISIAIAL-----------RMSLDENKKKSALITADRNLARRVK 403
              ++    +A   R  A S+A  +           R           L+         + 
Sbjct: 543  APAETYAEQASARRRLARSVAGWIAANVGTMRLESRGRTLAPGDILILVRQRNEFGVALT 602

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L   G+ +     + L+ T   + L +L  A+    D + +AT++  PL      E  
Sbjct: 603  RALKEAGVKVAGLDRMVLTETRAVADLIALARAVLLPEDDVELATVLASPLGGLSDEELM 662

Query: 464  LSRAKN-ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                        AL    + +        ++     + +      + + +       A L
Sbjct: 663  NLALDRKGTLRDALFTRADEHVAFAAARDLIAEAQARADFVTPYRFFAEVLGPMGGRARL 722

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            L     +   PL            + + S                   +      +    
Sbjct: 723  LARLGPEAAEPLDELLATALDYGTHEAPS------------------LQGFLAALDAAAA 764

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             +        ++   +  +  + +     ++   T +   E    L+ +   +       
Sbjct: 765  EVKREAEAAGDSVRLMTVHGAKGLQAPLVILPDTTGQRGKEARDLLYWIDAPQGGG---- 820

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
                        P    +    S  ++  L   +   +       +         +    
Sbjct: 821  ----------EVPIFCPRADMRSAAVRQALASASDRGFEEYNRLLYVALTRAEDHLIVCG 870

Query: 703  LRENNIPTIASRW------LQRLLVLGGTDFFDNLK-------KRGQCYLDWTRKLDYTT 749
                +       +       +RL  +   +    L               D    +   T
Sbjct: 871  AATKSRLPETCWYESVRAGFERLDGVAEIEAEPPLDGTILYYAAPQSAPPDRLAAISTAT 930

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK--DPDRTD 807
              P      P     A P       I +L+    A      L        +         
Sbjct: 931  AAPLPGWIGPETGWRAAPPPEPKQRIDRLVPSRSAEGESTGLAAASPLAGRGTGREAAMA 990

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
            RG L H ++  L               + Q      +          + +          
Sbjct: 991  RGRLIHALLQHLPDLPPGDRREAARRYLAQPGHRLGD----------VEQTDVIDAVFDV 1040

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
            L+H +             P  +A    G+ + G  DR+ +L    V I DYKT   P  +
Sbjct: 1041 LDHPDLTALFGPASRAEAP--IAGIVGGVEIGGLIDRLAVLPD-RVLIADYKTDRQPPAD 1097


>gi|163746115|ref|ZP_02153474.1| DNA helicase II, putative [Oceanibulbus indolifex HEL-45]
 gi|161380860|gb|EDQ05270.1| DNA helicase II, putative [Oceanibulbus indolifex HEL-45]
          Length = 805

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 83/727 (11%), Positives = 194/727 (26%), Gaps = 109/727 (14%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
             +   R +   +++       R +         V     T +A +E+++   ++ G++ 
Sbjct: 52  AGTGKTRALTARIVHLLNTGRARPN--------EVLAVTFTNKAAREMKNRVGQMLGQQV 103

Query: 73  TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
             +P + +   +                  V  ++R  EL  L   +     D    L  
Sbjct: 104 EGMPWLGTFHAIC-----------------VKLLRRHAELVGLKSNFTILDTDDQLRLLK 146

Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
           +  L       +  W A+ LA +ID  +      + +       Y               
Sbjct: 147 Q--LVAAEGIDDKRWPARMLAGLIDGWKNRALTPDKVPTADAGAYNHR-------GPEIY 197

Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-----GPIIIAGSTGSIPATARLMS 247
             +  RL+ELNA+      + ++     H     +       I++     +  A    + 
Sbjct: 198 AQYQRRLIELNATDFGDLLLHMVTIFQAHPDVLAQYQRWFKYILVDEYQDTNVAQYLWLR 257

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +A        +   D       W      +     ++      P   + KL        
Sbjct: 258 LLAQGHKNICCV--GDDDQSIYGWRGAEVGNILRFETDF-----PGAHVVKLEQNYRSTP 310

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
             +     V     GR                     L   +   +     V LI   + 
Sbjct: 311 HILAAASGVIAGNEGR---------------------LGKTLWTEETEGEKVRLIGHWDG 349

Query: 368 REEAISIAIALRMSLDENK-------KKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            EEA  I   +  +    +          A++    +  R  +      G+   +  G  
Sbjct: 350 EEEARWIGDEIESAQRGTRGLDPFSLDDMAILVRASHQMRAFEDRFLTIGLPYKVIGGPR 409

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGN 479
               L      +    +   +D +A   +V  P        ++ + R      +  + G 
Sbjct: 410 FYERLEIRDAMAYFRVVTSPDDDLAFERIVNTPKRGLGDKAQQKIQRTARDHGVNLVEGA 469

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
           +       +      ++                   +      ++D     +        
Sbjct: 470 RILLAHDGIGGKGGAQLRLLVEGIDRWSSMLHGPRIEISEDDSVLDDGAVPL-------- 521

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
                          +L    L             +W  ++          + E    ++
Sbjct: 522 ---RVDYGPPEVSHVELAEMILDESG------YTGMWQNDKTPEAPGRLENLKELVKALE 572

Query: 600 --ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
              N   +++ ++ ++D E    +      + I+    ++ L F  + L G  +G++P  
Sbjct: 573 GFENLQGFLEHVSLIMDNE----QEGDGEKVSIMTLHAAKGLEFPMVFLPGWEDGLFPSQ 628

Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN--IPTIASRW 715
            + +         +  +K  E+    A      A     + +  + R        + SR+
Sbjct: 629 RSMD---------ESGIKGLEEERRLAYVGITRAEQICTISFAANRRVFGQWQNAMPSRF 679

Query: 716 LQRLLVL 722
           +  L   
Sbjct: 680 IDELPEE 686


>gi|328951963|ref|YP_004369297.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109]
 gi|328452287|gb|AEB08116.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109]
          Length = 1137

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 90/839 (10%), Positives = 211/839 (25%), Gaps = 134/839 (15%)

Query: 172  LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-------HLMK 224
            L               L  A   + E             + A +   ++         + 
Sbjct: 344  LLQPDEVPAVQDLIILLNQALTAYEELCQTRRVLDFSALEQAALNLLSDKNIPDLLWRLD 403

Query: 225  GTKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKST-- 279
                 +++     +      L+  +    +   G  ++   D       W     +    
Sbjct: 404  RRLSHLLVDEFQDTSARQMELLCRLLTGWSGDLGRSLMVVGDPKQSIYGWRQARVELFFQ 463

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                        P ++   L               + S  +   + V  ++ +     + 
Sbjct: 464  TRRQKRLPCPEAPPFTTLTLSTNFR----------STSTLIQWVNNVFGQTIMKAGERNG 513

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNER----EEAISIAIA--LRMSLDENKKKSALIT 393
                    K    Q     +AL  A +      +EA  +A    L++      +   ++ 
Sbjct: 514  VEFSEAVAKPDAKQGDPPQLALFTAADRSLGRKQEANWLARQVSLKVKNIAAGESIGILL 573

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              R       L     G+++ +  G+ L  +L    L + + A+   +D +A A L++  
Sbjct: 574  FTRRQLPAYLLACQNAGLSLRVREGLALYDSLAVQHLHNAVTALVHPHDDIAWAGLLQG- 632

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                  P  +L++  +  E    +  +      D  + V            +        
Sbjct: 633  -FAGPQPLGFLAQVADYQEEFWSKKLEACAVSNDCPAEVRQWWRVCAEAGKM-------- 683

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                                                      L     + +      +  
Sbjct: 684  -------------------------------------VGRAPLHEILAEWLSTAGGWERI 706

Query: 574  NLWFEEEGKTLSSLFSKIIETGSC--IKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              W    G   + ++  ++ T +    +A      D++T+       + K      + +L
Sbjct: 707  AAWEGAAGVANARVYLDLLATAASCTPEATLARLTDLLTQAFQPADPRAKDSP---VEVL 763

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL----------------- 674
                ++ L FD + L   +        +  PFL     S                     
Sbjct: 764  TVHAAKGLEFDHVFLPSGDWQPLLTGKSDTPFLMEETSSAGGAVIALNCAYAGKEQSLLY 823

Query: 675  -----KTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTI------ASRWLQRLLV 721
                    ++ + +A   F +A     + L  +  ++ +              WL++   
Sbjct: 824  HTLRDLAKQRLLSEARRLFYVAVTRAKKSLQISGVIKTDKAGNCQFPANSPLGWLRQHYP 883

Query: 722  LGGTDFFDNLKKRGQCYL-----DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
             G          +          + +  L  T +      P    P     +    S++ 
Sbjct: 884  DGELYPGQKSIWQPPPLPVSVFQEISELLLPTGETKTPPLPYDLQPELLPYKMQFPSQLS 943

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
                +  +  + R    +     +       RG + H ++  L +         +  +++
Sbjct: 944  GSEANNDSDQSNRFTSDEDTAGEEITL-ARLRGEIIHRLLETLSRGVPLPEPAAVASVLR 1002

Query: 837  QIIDSHFEKENLPPHIDIIWRH-LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
                S     +L   +    +           L+      +++  +      +   +S  
Sbjct: 1003 SAGVSAEYALDLADEMLAEVKACRDDPFLAPLLD------ANLPVVRSEWLVEAWQDSAT 1056

Query: 896  IHLTGFADRIDLLKSG-FVDITDYKTGDNPKK-------ETAQKLIDPQLSLEAAALKA 946
            I   G  DR+     G    + DYKT   P          +      PQL         
Sbjct: 1057 IR-RGRLDRLVF--DGYQWWLLDYKTSRPPVGIDWETFLASETDAYRPQLLAYRELAAR 1112


>gi|163846878|ref|YP_001634922.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222524699|ref|YP_002569170.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
 gi|163668167|gb|ABY34533.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222448578|gb|ACM52844.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
          Length = 746

 Score = 93.8 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 76/728 (10%), Positives = 186/728 (25%), Gaps = 112/728 (15%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +        ++PL    +     T +A +E+R     + G+       I +   +
Sbjct: 37  VLTHRIAYLIAETGIDPL---QILAVTFTNKAAREIRERLNLLVGETVAHEITIGTFHAI 93

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                  D++            +R   +            D  + L       L ++   
Sbjct: 94  CTRWLRRDIVHL--------GRERDFVIYD---------SDDQERLMKRVLRELNLNEKQ 136

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
               A  +  +I   + E    E         +          +      + + L+E NA
Sbjct: 137 YPPRA--ILGVISRAKNELVDPEAFARTARSYFDE-------IVARCYTRYQQLLIESNA 187

Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  +  +R   EH             +++     +  A   ++  +A       V+
Sbjct: 188 LDFDDLLVETVRLFQEHPAILHHYHQRYRFLLVDEYQDTNRAQYLIVRALAERDRNLFVV 247

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       W     ++            +P   +  L       +  +     + + 
Sbjct: 248 --GDEAQSIYAWRGADIRNILQFE-----HDYPDARVILLEQNYRSTQAILDAAQALMHA 300

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
              R    +                    +  +      V L EA +E +E   +   + 
Sbjct: 301 SPQRKYAKN--------------------LWTVNGKGEAVTLYEASDEEDEVQFVVDEIL 340

Query: 380 MSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             + E        A++      +R V+  L   G+   +  G+          + + L  
Sbjct: 341 RLIAEGKARPGDCAIMYRTNAQSRLVEEALIHAGVPYYVVGGVRFYERKEIKDVLAYLRL 400

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           I    D +++  ++                              N       +  V + I
Sbjct: 401 IANPYDSVSLQRII------------------------------NWPGRGIGERTVAELI 430

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
           A  +      +   R   ++  ++          +T      +  +   G +++SD    
Sbjct: 431 AWARTLGLPLYQALREIADNDAISHPFGGRARTALTEFYRLLSELHQLHGMMALSDLIDY 490

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L  + +           E + +  +    +             +    +  +    
Sbjct: 491 L---LNRIDVRATLYSEYDGDEADDRWRNVQELRNAALKYVNLPVETQLTAFLEEIALVA 547

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            V      S T+  +   +++ L F  + L G+ EG+ P + + +               
Sbjct: 548 DVDAIDRNSDTVTCITLHQAKGLEFPCVFLLGIEEGLLPHSRSLDN-------------- 593

Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            +    +    +       R L    + +      +      R L          + +RG
Sbjct: 594 RDSIEEERRLLYVGMTRAQRRLYLCHATKRTMFGRVNIGARSRFLNDIPPTLVQQVHRRG 653

Query: 736 QCYLDWTR 743
              +    
Sbjct: 654 YRAIPAVA 661


>gi|219871827|ref|YP_002476202.1| exodeoxyribonuclease V subunit gamma [Haemophilus parasuis SH0165]
 gi|219692031|gb|ACL33254.1| exodeoxyribonuclease V, gamma subunit [Haemophilus parasuis SH0165]
          Length = 1085

 Score = 93.8 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 73/752 (9%), Positives = 200/752 (26%), Gaps = 63/752 (8%)

Query: 27  NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86
              L+        NP   +   + V +    Q L+ +  +  G    +          + 
Sbjct: 13  QKNLLTAILAKDPNPDPFSQEIVLVQSLGMAQWLQMQIAQEIGVAGNM--QFPYPTSFLW 70

Query: 87  EKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
           +++    +L  +L    S  ++  L  L R+I  +              +          
Sbjct: 71  QQYR---VLFPDLPKENSFDRQSMLWRLMRIIPQFLE-----QPAFEALASYLNQGDQLK 122

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---------------------WLL 183
              LA+ +AD+ D       +W  L      +  +                      W  
Sbjct: 123 QYQLAEKIADLFDQYLVYRPQWLVLWEKGQSQAVVDEIMRAVSFKQKNAKEIATNVAWQS 182

Query: 184 AA--DFLKIASKYWTERL-VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
                 +    +   E +    + +         +              I + G +    
Sbjct: 183 ILWNALVADIKQDSDEAIFNTSHRAYLQQRYFDKLDNLTATEKARLPKRIFMFGISSLPH 242

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT--ITEKSTNITSSNTTYSTHPQYSLAK 298
           +   ++  ++ H N  +                  + + +     S    +   +     
Sbjct: 243 SQLAVLKKLSEHCNVHLFFTNPSMEYWANDREDKVLEKLALKDNLSEAELAELFEKQGNP 302

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP--NIQKCF 356
           LL     + ++   L   +           +   P   + ++   +        ++    
Sbjct: 303 LLTVWGKQGKEFLNLLTETGIQDISLYNHFEDKNPTLLTQVKKAILYSEHQTTFSLANED 362

Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLEL------ 406
             + L    ++  E   +   L    +           +++AD +        +      
Sbjct: 363 RSIQLHTCHSKMREVEVLYNQLLYLFETYPDLSPKDIIVMSADIDSYAPYINAVFSRYEK 422

Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYL 464
            R  I   +S           +    LL+          I  L      +  + F E+ +
Sbjct: 423 ERRYIPFTLSDQKISYINPIIASFLQLLSIKENKFSAEEILDLFDISAIREKYQFNEQKI 482

Query: 465 SRAKNALELVALRGN--KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
           +  +  ++ V +R      + +  +  S            +         +    + +  
Sbjct: 483 NTLREWIKSVGIRSGLKIENPEWQNYNSWENGLNRLLLGTSLKAENNGWQNILAFDESYG 542

Query: 523 LVDHILQCITPLVTYKTNKNST-CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
           L+  +   +   +   T  ++  C   S+S W +   T +     +  + +  +   +  
Sbjct: 543 LISELTGNLAKFIDNLTAWHAFICQPQSLSAWQEQLFTLVAQTYQENDQSIDAILTLQ-- 600

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
           + +  +  +I ++           +++ T+ +  +           +     L  R + F
Sbjct: 601 QAIRDVIEQIQQSHFEEAIGIDVMLELFTQQLSEQRSHLNFL-VGKVNFCTLLPMRAIPF 659

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYT 700
             + L G+NEG +P+    N F           ++            E     +  L  +
Sbjct: 660 KVVCLLGMNEGEFPRQQTINSFDLMQYAPQKGDRSRRDDDRY--LFLETLLSAQQMLYIS 717

Query: 701 RSLRE--NNIPTIASRWLQRLLVLGGTDFFDN 730
              +   ++   + S  + +L      +    
Sbjct: 718 YIGQSLTSSQEKLPSVLVTQLFDYLKENLPKA 749


>gi|167771642|ref|ZP_02443695.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM
            17241]
 gi|167666282|gb|EDS10412.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM
            17241]
          Length = 1174

 Score = 93.8 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 80/783 (10%), Positives = 170/783 (21%), Gaps = 61/783 (7%)

Query: 214  LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
              + E           ++I     +  A   +   V+ + +   +    D       +  
Sbjct: 381  YAKTELAQEAGALYDEVLIDEFQDTNAAQEIIFRAVSQNESN--LFMVGDVKQSIYRFRQ 438

Query: 274  ITEKSTNITSSNTTYSTHPQYS--------LAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
               +                +                         +L +        + 
Sbjct: 439  AMPELFMEKKKRFAPYDGKTFPAKIVLGKNFRSAQAVTGCVNFFFSQLMSGEIGEVDYNQ 498

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI-------SIAIAL 378
              + S        +     L     +      D   +EA +  E+          +A   
Sbjct: 499  EEALSPGASFPEGIEAGCTLRLIDASQYAGELDSTQLEARDVAEQIAGMLERGDLVADGG 558

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                        L+ +    A+     LTR G+ +         T+   + + +LL  + 
Sbjct: 559  VTRRVRPSDICVLLRSPAQKAQAYFDALTRRGVPVWAEPKSGFLTSREIAPVVALLRVLG 618

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                 +  A+ +  PL      E    R  +            + +  D ++        
Sbjct: 619  NPTLDIDFASALLSPLFGLTADELTQIRLTDRR-APLYIAAAKAAEAGDPRAANAVDTIA 677

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
            +            +     E    +       +                   +   K   
Sbjct: 678  RLRRFASNATADAVIRRIYEECDYMGKVQAMRMGQARRANLLLLVQYACDYHAGGYKGLS 737

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID----------- 607
              +  V     R           +    +    I     ++   +   D           
Sbjct: 738  GFIGFVDRLIDRGGDFAPAASMSEQADVVRVMSIHRSKGLEFPVVFLCDTAKRFNREDLN 797

Query: 608  ---IITRLIDGETVKPK-------IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
               ++   +    V+                  L    S L     ++   L        
Sbjct: 798  GNTLLHSELGFACVRRDFELMKQYTTVPMQALRLELERSMLSEELRVLYVALTRAKQRIV 857

Query: 658  TAKNPFLSRVMQSDL--------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
                      +   L         L   +     A  D+ +    RH            P
Sbjct: 858  ITGVVTKPEELLCALVSESGTDGKLPPHQVRGANAYLDWILMAAARHPALAERFGLAGAP 917

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
              AS       +    D   + +K  +         D    +   +R     P EAQ + 
Sbjct: 918  LDASEAPLTFELKAAADGEPDAEKTSETT---AASPDEAALEALRRRLAFRYPFEAQTKI 974

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT--ELIKKRINKN 827
             +   + QL    YA  A                    RG   H  +   +      + +
Sbjct: 975  PTKMAVSQLAGSAYA--ASYRFSARPAFLQGDGLTGAQRGNALHKFMQFADYQAAARDAS 1032

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
                    +  +         P  +   +       +  F   +   +            
Sbjct: 1033 GEIARMAREGFLSRQEADSIRPDRVRAFFSSRL--AARIFSAKQVWRELRFLAEAGEREL 1090

Query: 888  K----MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
                 +        + G AD + L + G   + DYKT      +  ++    QL+L   A
Sbjct: 1091 GAYSALFTNGGETAIQGVADCVFLEEDG-AVVVDYKTDRVKTPDELRERYRVQLALYRNA 1149

Query: 944  LKA 946
            L  
Sbjct: 1150 LTE 1152


>gi|33242131|ref|NP_877072.1| hypothetical protein CpB0800 [Chlamydophila pneumoniae TW-183]
 gi|33236641|gb|AAP98729.1| UvrD [Chlamydophila pneumoniae TW-183]
          Length = 639

 Score = 93.8 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 84/691 (12%), Positives = 171/691 (24%), Gaps = 127/691 (18%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTI-LPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            +     T +A +EL+   +      +   +P++ +   +                    
Sbjct: 52  EILAVTFTNKAARELKERIVNQCASTNEFDVPMVCTFHSLG------------------- 92

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETE 162
               +  L R I +   +    I D      L       + +   LA  +   +   +  
Sbjct: 93  ----VFILRRSINLLNRENNFTIYDQSDAEKLIKHALQQHNLKPNLASKIQAHVSQAKNR 148

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               EDL       Y    +          + + ++L+E NA          +R   E  
Sbjct: 149 LLFPEDL---DPNDYIDPVVS-------IYQEYQKKLIEANALDFDDLLFLTVRLLRESP 198

Query: 223 MKGT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                       ++I     +  A   LM  ++       V    D       W      
Sbjct: 199 EAQELYNQLWKALLIDEYQDTNHAQYTLMQLLSKQHRN--VFAVGDPDQSIYSWRGANIH 256

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +     ++        Y  AK+L                   +              +  
Sbjct: 257 NILNFEND--------YPNAKVL------------------CLEENYRSYGNILNAANAL 290

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
              N   LE ++ +++     + L     +REEA  +A  +           +   +   
Sbjct: 291 IKNNASRLEKELRSVKGPGEKIRLFLGSTDREEADFVAAEILQLHRVGNIKLRDICIFYR 350

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
             + +R  +  L R  I  +I  G+          + + L      +D +A    V  P 
Sbjct: 351 TNSQSRTFEDALLRRRIPYEIIGGLSFYKRKEIQDILAFLRIFISKSDIVAFDRTVNLPK 410

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G    +                        +   +    A Q+         S+  +
Sbjct: 411 RGIGSTTIFAL------------------TQYAIAQGLPILKACQQALDTKDVKLSKKQQ 452

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           E  +  + L   I      L      ++       +    +   T        E      
Sbjct: 453 EGLQEYLALFPQIEHAYNTLSLRDFIESVVRITGYLEILKEDADTFKDRKSNLEELYHKA 512

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           L  E++                            +  L    +       +  + ++   
Sbjct: 513 LESEQQ-------------------NPKTHLELFLDDLALKGSDDDLNLTADRVNLMTLH 553

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
             + L F    L GL E + P   +                T E    +    +      
Sbjct: 554 NGKGLEFRVSFLVGLEEQLLPHANSLGG-------------TYENIEEERRLCYVGITRA 600

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLL 720
           + L+Y      RSL         SR+L+ + 
Sbjct: 601 QDLLYLTTAQVRSLWGTVRMMKPSRFLKEIP 631


>gi|54025152|ref|YP_119394.1| hypothetical protein nfa31830 [Nocardia farcinica IFM 10152]
 gi|54016660|dbj|BAD58030.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 302

 Score = 93.8 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 77/265 (29%), Gaps = 28/265 (10%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S S        P     R I ++   P          RGT+ H ++ +L      +   
Sbjct: 29   LSPSRAMDFKQCPLKYRLRAIDRIPEPPSRH-----AVRGTVVHAVLEDLYGLPAAERGR 83

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIW------RHLFHKISHSFLEHEEKIQSSIEKIFV 883
            +    + +   +    E       +              +  ++  +  +  +       
Sbjct: 84   DRAAALIEPAWARVLAERPEIAELVAEDGPAAFLAEVAALVDTY--YRLEDPTRFSPESR 141

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
                ++ +   G+ L GF DRID+  +G + + DYKTG  P      K +  QL   A  
Sbjct: 142  EARVEVELGD-GVLLRGFVDRIDVAPTGELRVVDYKTGRAPGPAQETKAL-FQLKFYALV 199

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
            +             A L  I L     +    + ++    +         + E       
Sbjct: 200  VLR-----TRGILPAQLRLIYLADGQILTYAPDAEELDRFERTLAALWTAIREAGR---T 251

Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLA 1028
            GE P       +       +Y  L 
Sbjct: 252  GEFP-----PSTSWLCGYCDYKPLC 271


>gi|319745133|gb|EFV97457.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae ATCC
           13813]
          Length = 766

 Score = 93.8 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 86/697 (12%), Positives = 206/697 (29%), Gaps = 126/697 (18%)

Query: 46  SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLL-----LSYNL 99
           ++     T +A +E+R          + T+   I +   +       +        ++ +
Sbjct: 61  NILAITFTNKAAREMRERAIALNPATQDTL---IATFHSMCVRILRREADYIGYNRNFTI 117

Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
              V   ++   + R+I                ++      S    I  AKN  D++D I
Sbjct: 118 ---VDPGEQRTLMKRIIKQLN-----------LDTKKWNERSILGTISNAKN--DLLDEI 161

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             E++  +    +               +    K + E L    A       +  +R   
Sbjct: 162 AYEKQAGDMYTQV---------------IAKCYKAYQEELRRSEAMDFDDLIMMTLRLFD 206

Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           ++       +     I +     +  A  +L+  +A+      V+   D       W   
Sbjct: 207 QNKDVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGA 264

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             ++            +PQ  +  L +     ++ ++   NV N    R           
Sbjct: 265 DMQNILDFEK-----DYPQAKVVLLEENYRSTKKILQAANNVINHNKNRRPK-------- 311

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSAL 391
                        K+         +    A+NE+EEA+ +A  +   + E     K  A+
Sbjct: 312 -------------KLWTQNDEGEQIVYHRANNEQEEAVFVASTIDNIVREQGKNFKDFAV 358

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +      +R ++  L +  I   +  G    +      + + LN +   +D ++   +V 
Sbjct: 359 LYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLNILANTSDNISFERIVN 418

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P                       +       +  ++S   ++  +  + +      + 
Sbjct: 419 EP-----------------------KRGVGPGTLEKIRSFAYEQNMSLLDAS-----SNV 450

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
           +    K  A   V  +   I  L +   +   T    ++ D T           L     
Sbjct: 451 MMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQNTL---ES 507

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              +   EE  +++  F    E     +         +  L           +++ + ++
Sbjct: 508 QARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAEVTLM 567

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + L G+ EGV+P + A              ++ A++   +    +   
Sbjct: 568 TLHAAKGLEFPVVFLIGMEEGVFPLSRA--------------IEDADELEEERRLAYVGI 613

Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723
                +++     TR+L         +R+++ +    
Sbjct: 614 TRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDEL 650


>gi|297192223|ref|ZP_06909621.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151259|gb|EDY67267.2| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 348

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 63/271 (23%), Gaps = 15/271 (5%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TLVE            + + +   +++A  ELR       G      P   +        
Sbjct: 78  TLVEAVAARIAAGTDPSRILVLTFSRKAAVELRDRMALRLGG--ARGPQATTFHSYCYAL 135

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
             A            +   RLL      +  R  L   I       P     +       
Sbjct: 136 VRAHQDADL-----FAEPLRLLSGPEQDVTVRELLAGQIGLPGVRWP-DELRACLTTRGF 189

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
           A  +  ++          + L           W  AA FL          L         
Sbjct: 190 ADEVRAVLARSRELGLGPDSLARFAARTGRPDWGAAASFLAEYLDV----LDLQGVLDYA 245

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                 +   A+ +       + +     + PA  RL+  +A    G  ++   D     
Sbjct: 246 ELVHRAV-LLADDVALPGYDAVFVDEYQDTDPAQVRLLRALAG--GGRTLVAFGDPDQSI 302

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
             +                 +      +A L
Sbjct: 303 YAFRGADVNGILDFPEAFPRADGGPAGVAVL 333


>gi|17546954|ref|NP_520356.1| DNA helicase II protein [Ralstonia solanacearum GMI1000]
 gi|17429255|emb|CAD15942.1| probable dna helicase II protein [Ralstonia solanacearum GMI1000]
          Length = 829

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/710 (9%), Positives = 167/710 (23%), Gaps = 84/710 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
           + V     T +A +E+ +    +     +      I +   +      A    +      
Sbjct: 88  SGVLAVTFTNKAAKEMTARLSAMLPINTRGMW---IGTFHGLCNRLLRAHYRDAG----- 139

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +    ++L+    +   +  L  +  D     P ++                 I+  + +
Sbjct: 140 LPQTFQILDTQDQLSAVKRLLKSLNIDDEKFPPKNVQY--------------FINGAKEQ 185

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE---- 218
             +  DL                  +      +  +             +          
Sbjct: 186 GLRAGDLEIANEFDRR---------MADLYAAYDAQCQREGVVDFSELLLRCYELLRYND 236

Query: 219 -AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI----VLPGLDCHIPTAIWNT 273
                 +     I++     +       +  +A      +    +    D       +  
Sbjct: 237 AIRAHYQRRFKHILVDEFQDTNRLQYAWLKILAGLGEAGVTPNAIFAVGDDDQSIYAFRG 296

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
               +                        L+        + + +N +   +         
Sbjct: 297 ANVGNMVDFEREFRV---------AHRIKLEQNYRSHGNILDTANHLIAHN--------- 338

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSAL 391
                   T  L   +         V +  +  + +EA  I   +R   +    + + A+
Sbjct: 339 --------TRRLGKNLRTDAGHGEPVRVYPSATDGQEAGWIVEEIRERIASGTARSEIAI 390

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +      +R ++  L   GI   +  G+            + L  +   ++  A   +V 
Sbjct: 391 LYRSNAQSRVIEHALFSVGIPYKVYGGLRFFERAEIKHALAYLQLLENPDNDAAFGRVVN 450

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P    G       +    L  V+L  +           L       ++           
Sbjct: 451 FPARGVGARSLEQLQDAAKLYGVSLAASVPYLTGAAGTKLAAFVRLIEQMRADTRQMTLP 510

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
              +    A  L+ H       L   +  +       +           +  +      +
Sbjct: 511 EIVQHVIHASGLITHYQGEKEGLDRIENLQELVTAAQAF---VAEEGYGVDAIATALPMR 567

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              +   E G+T S   ++++   +  +   +        L  G+           + ++
Sbjct: 568 HDAMLRIEGGETDSDAVTELVADETPTEMTPLVAFLTHASLEAGD--NQAQAGQDAVQLM 625

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + + GL EG++P   +         +  L      +   +    F   
Sbjct: 626 TVHAAKGLEFHVVFITGLEEGLFPHENSLLDTDGLEEERRLMYVAITRARERLYLSFAQ- 684

Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                   +R L       I SR+   L                      
Sbjct: 685 --------SRVLHGQIRYHIRSRFFDELPEATLKWLTPQHTGYSPTRRAQ 726


>gi|271967185|ref|YP_003341381.1| RecB family exonuclease-like protein [Streptosporangium roseum DSM
            43021]
 gi|270510360|gb|ACZ88638.1| RecB family exonuclease-like protein [Streptosporangium roseum DSM
            43021]
          Length = 295

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 81/267 (30%), Gaps = 28/267 (10%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S     +  P     R I +L   P          RGT+ H+++  L        T
Sbjct: 17   ALSPSRAGDFMTCPLLYRFRVIDRLPEPPSP-----AAVRGTMVHSVLERLYDLPAPART 71

Query: 829  PEINHLMKQIIDSHFEKENL-------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                  + +        E+               W      +   +   E+     +E  
Sbjct: 72   VAAAQELLEPQWHRLLAEDPAYGGMFADDREQAQWLAQAGSMLERYFTLEDPTC--LEPA 129

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
               +  +  ++  G+ L G+ DR+D+  +G V + DYKTG  P      K +  Q+   A
Sbjct: 130  ERELYVEAVLD-NGLMLRGYIDRLDVAPTGEVRVVDYKTGSAPGPAFEAKAL-FQMKFYA 187

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
              L       +       L  + L    ++     D+    A E   K       I   +
Sbjct: 188  LTLWR-----LHGSVPRLLQLMYLGGGGEVLRYAPDEADLRATE--RKVQALWTAIERAM 240

Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            + GE P     R S        Y  L 
Sbjct: 241  ETGEWP----PRPSR-LCDWCSYQELC 262


>gi|149198487|ref|ZP_01875532.1| exodeoxyribonuclease V, gamma subunit [Lentisphaera araneosa
           HTCC2155]
 gi|149138493|gb|EDM26901.1| exodeoxyribonuclease V, gamma subunit [Lentisphaera araneosa
           HTCC2155]
          Length = 1099

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 78/741 (10%), Positives = 182/741 (24%), Gaps = 64/741 (8%)

Query: 18  FREMIPALLNGTLVENFRYDPL--NPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
              ++  L +    E  R + L   P  L    + + ++   + +  +  +  G  + I 
Sbjct: 9   LEVLVSQLADSLQNEKCRPEELLGRPNDL----VIIQSRGMAKWIDMQIADHNGIATRIE 64

Query: 76  -PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
            P I++   +             ++    S   R+ +L   I      + D +K      
Sbjct: 65  YPFIRTF--ISSILVKCSYSPKEDIWDRESLAWRIFKLLPEIESKFTIIHDYVK------ 116

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--EDLHALKNEKYGMWWLLAADFLKIAS 192
                 +      LA+ LA +ID        W    +      ++               
Sbjct: 117 -----TNQLRRFQLAEQLASLIDEYMVYRHDWLQSWIQGKAFTQFNQGLEKELKHEAWQI 171

Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
             W +       S     Q  L+  + +  +      I I G T   P        ++  
Sbjct: 172 ALWQKLCESAQNSFQAALQNFLLADDIQPEVLELPPRIAIFGITNMPPVFVNFFEKLSQL 231

Query: 253 PNGAIVLPGLDCHIPTAIW---------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
               +            I              +        + T+          LL  L
Sbjct: 232 TQVTLYHFNPCQEYWGDIRMERFSAFPLQGKDDLGLRGPIFSRTFENEIPDLPHSLLKSL 291

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
            +   D   L   +                           ++    +       V +  
Sbjct: 292 GLLGRDFLNLLIENTSFDTLEHYAPSESSQLLHRIQNGILEMQEDFEDDLVTDDSVKISS 351

Query: 364 ADNEREEAISIAI----ALRMSLDENKKKSALITADRNLARRVKLEL--TRFGINIDIS- 416
             + R E  ++      +L  + D   +   ++  + +        +      + +D S 
Sbjct: 352 CHSPRRELEALHDYLVGSLADNPDLRPQDIIVMAPNIHDYAPHIRNIFSNPDNMPLDFSI 411

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK----------FGFPEKYLSR 466
               L      +    +            +  + ++P                 +     
Sbjct: 412 TDQELRGRPLVNSYLKIFELAKSRLSSNDLLEIFENPDFLSRYKLKVDDVHTIRDWIEQA 471

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                +    R +    +                     P     +          ++  
Sbjct: 472 RIRWGKDAQQRADWELPEFEQNSWKFGFDRLLAGYAFDDPELYDSILSCPIGGDGAILGK 531

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           I      L +    +  T    S+ +W +     L++          N   + E   + +
Sbjct: 532 IKTAADQLFSI--YEIITQEEKSLQNWCEYFSFVLKS------NFEENADNQNEYNIILT 583

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS---STLFILGTLESRLLNFDT 643
              K+ E    ++ N +   +I  + ++    +           +     L  R +    
Sbjct: 584 QLQKMSERADLLQMNEVIAAEIAIKSLNSALEEQSSSHGFISRGITFCSLLPMRSIPVKV 643

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRS 702
           + + GLNEG  P+   ++ F   +M  +         +       E     R  L  +  
Sbjct: 644 ICMLGLNEGQLPRTNHRSGF--DLMNKNWRQGDRTMSLDDRYLFLESLVSAREKLYLSYV 701

Query: 703 LRE--NNIPTIASRWLQRLLV 721
            +   +N     S  L   + 
Sbjct: 702 GQSERDNEEIPPSVILAEFME 722


>gi|116627783|ref|YP_820402.1| superfamily I DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101060|gb|ABJ66206.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus LMD-9]
          Length = 770

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 79/690 (11%), Positives = 195/690 (28%), Gaps = 120/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R     +    +T   +I +   +       +       N     
Sbjct: 54  NILAITFTNKAAREMRER--AVALNPATSETLIATFHSMCVRILRRE-ADHIGYNRNFTI 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++             L P+       +    I  AKN  D++D I  E
Sbjct: 111 VDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLLDEIAYE 157

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            +  +    +                    K + E L    A       +  +R   ++ 
Sbjct: 158 HQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNP 202

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  +  L +     ++ ++   +V      R              
Sbjct: 261 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANDVIKNNRNRRPK----------- 304

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITA 394
                     K+         +    A++ER+EA+ +A  +   + E   N K  A++  
Sbjct: 305 ----------KLWTQNDEGEQIVYYRANDERDEAVFVASTIDNIVREKVKNFKDFAVLYR 354

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + S LN I   +D ++   +V  P 
Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANTSDNISFERVVNEP- 413

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                 +       +  L++   ++  +  + +          +
Sbjct: 414 ----------------------KRGVGPGTLEKLRNFAYEQNMSLLDASANIMLSPIKGK 451

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                       +      ++  +   +      ++      +                 
Sbjct: 452 A--------AQGVYDFANMILNLRDQLDGLSITDTVEAILDKSGYLDALSMQQTLESQSR 503

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  +++  F +    G+  +         +  L           +++ + ++   
Sbjct: 504 IENIEEFMSVTKNFDETNTDGTEDETGIDRLGRFLNDLALIADTDDGEAEAAEVTLMTLH 563

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P + A         +  L               +      
Sbjct: 564 AAKGLEFPVVFLIGMEEGVFPLSRASEEPDELEEERRLA--------------YVGITRA 609

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRL 719
             +++     TR+L         SR+L+ +
Sbjct: 610 EEILFLTNANTRTLFGKTGYNRPSRFLREI 639


>gi|308049019|ref|YP_003912585.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Ferrimonas
           balearica DSM 9799]
 gi|307631209|gb|ADN75511.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Ferrimonas
           balearica DSM 9799]
          Length = 1159

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 113/946 (11%), Positives = 248/946 (26%), Gaps = 100/946 (10%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L   +VE  +  PL P  L +    V +    Q L+      +G        ++     +
Sbjct: 26  LRDLVVEWIKSHPLAP--LENEVFLVQSNGMAQWLKLALAADSGIGIAAALQMQLPSRFI 83

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
            + +    +L  +  P  S   + L   RL+ +    L               P      
Sbjct: 84  WQLYR--QVLGADAVPKDSPFDKPLLRWRLLRLLPGLLDRPAFAPLQRFLEDDP-DLRKR 140

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLAADFLKIASKYWTERLVEL 202
             LA+ LAD+ D  +     W    A   ++      +            + W   L ++
Sbjct: 141 DQLAEQLADLFDQYQVYRADWLAAWARGEDELINATGFRNPLPSEQLWQPELWRAILADM 200

Query: 203 NASSPVGYQIALMRAEAEHLMKGT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
           N +     +  L +   + L +G         I++ G +         ++ +A H    +
Sbjct: 201 NDAERDTSRAMLHQQVVDRLRQGPPPVGLPRRIVVFGISTLPSQMIEALAALAQHCQILL 260

Query: 258 VLPGLDCHIPTAI----------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +     H    I           +    +     ++    +         L  +    R
Sbjct: 261 CVQNPCQHFWGDIIEQKDLLRAQLSRARHQRKPGLAAELDPAAQHAEVNPLLAAWGKQGR 320

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE------------NKIPNIQKC 355
           + +  L         +    S        SD     +                   +   
Sbjct: 321 DYIGMLYGYDQPEAYQGQFNSIDLFEDPLSDSDGRLLHRIQAGIFELEPTPAPPMRVDPD 380

Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLEL----- 406
              V    A + + E   +   L     E+         ++  D +        +     
Sbjct: 381 DDSVRFTLAHSRQREVEILQDHLLKRFAEDPSLTPTDVIVMMPDVSQYAPHIEAVFGQVE 440

Query: 407 --TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEK 462
                 +   I+        +    L  LL+          +  L+  P   A+FG  E 
Sbjct: 441 RDDPRHLPFTIADRPQRGQQVLVLALERLLSLSQARFTVSELLDLLAVPALRARFGIDES 500

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEE 515
            L   +  +E   +R   ++     L        +     +        V    +    E
Sbjct: 501 QLPLLQRWVEDAGVRWGLDAAQRATLDLPDNLDQNTWAFGLKRMLLGYAVGQGDAWAGIE 560

Query: 516 DKELAVLLVDHILQCITPLVT-YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             E    L   ++  +  L+   +        + + + W +        +   +  +   
Sbjct: 561 PFEEIGGLDAALVGGLARLLDKLEGFWTQLGQSHTPAAWAQHLRRLCAELFRPQDEEETV 620

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +      + L+       + GS          ++       E V  +      +     +
Sbjct: 621 I-LARLDEALAQWLEACEQGGSTDPLPITVVREVCLSPFGEEGVSQRFLAG-KINFGTLM 678

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPF-----------LSRVMQSDLNLKTAEKYIGQ 683
             R + F  + L GLN+  +P++     F             + + +        +    
Sbjct: 679 PMRAIPFKQVCLLGLNDEDYPRSRPAMDFDLLAAAGWPDGRGQPIANQYRPGDRSRREDD 738

Query: 684 AAHDFEMANGTRH-LIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                E     R  + ++   R   +N     S  L +L+      +     +    +L 
Sbjct: 739 RYLFLEALMAARDQIYFSYVGRNARDNAERTPSVLLGQLMDHLRAGYCLEDGEDLVEHLT 798

Query: 741 WTRKLDY---------------------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
               L                          Q H +   P  P+       + +++  L+
Sbjct: 799 TVHPLQPFSRAYFSGTEGSLHTFAREWFDAHQGHVETESPALPVWQPQAPITLTDLASLL 858

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTL------FHNIITELIKKRINKNTPEINH 833
            DP  +   R L + F    +   D               + +  ++++   +  P+   
Sbjct: 859 RDPVRLLMTRRLGIWFGDDTEAAEDLEPFALDGLTSFQIRDELMTVLRQHPEQTGPQRAQ 918

Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           L+ Q I     +  LP           H    +    E   Q + +
Sbjct: 919 LLAQRIGRLGGRGQLPFGAFA-ELATDHLAEPTLAAFERAQQLAGQ 963


>gi|116052319|ref|YP_792630.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587540|gb|ABJ13555.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 1171

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 101/922 (10%), Positives = 241/922 (26%), Gaps = 73/922 (7%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L    V   R  PL PL    V ++  +    Q L+    E   +       I +  +V 
Sbjct: 25  LRDLAVSWMRRYPLAPLESERVLVH--SNGIAQWLKLALAEDPREDGGGGGGIAAALEVQ 82

Query: 86  ----EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                       +L     P VS + +     RL+ +    L            L+    
Sbjct: 83  LPAQFLWQAYRAVLGRESIPEVSELDKAPLTWRLMRLLPGLLERPEFRTLQRF-LADDAD 141

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLAADFLKIASKYWTER 198
                 LA+ LAD+ D  +     W D  +   ++               +  ++ W   
Sbjct: 142 LRKRHQLAERLADLFDQYQVYRGDWLDDWSQGRDQLRTANGQARPLGADERWQAELWRAL 201

Query: 199 LVELNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANH 252
           L ++ A S    +  + R   E L       +     +++ G +     T   ++ +A  
Sbjct: 202 LADVGADSLARSRSGVHRRFIEALRFASAAPRALPRRVVVFGISSMPAQTLEALAALARF 261

Query: 253 PNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
               + +     H    I             ++      ++       Q++   L  +  
Sbjct: 262 SQVLLCVHNPCRHHWADIVADKDLLRHEYRRQQRRAGVPADLDEDRQHQHAQPLLAAWGK 321

Query: 305 IKREDVKRLGNVSNEMYGRS------------------MVISKSFLPPDTSDMRNTDILE 346
             R+ +  L +  +    R+                    +               +  E
Sbjct: 322 QGRDYINLLDSYDDPDSYRNLFGEVNGGRIDLFSEEAPHGLLGQLQDDILELRPLAETRE 381

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRV 402
           +  P   +  + +    A + + E   +   L    + +     +   ++  D N     
Sbjct: 382 HWPPVAPRSDASIRFHVAHSAQREVEILHDQLLARFNADPSLKPRDVIVMVPDINAYAPH 441

Query: 403 KLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +        +  I   ++             L  LL           I  L+  P  
Sbjct: 442 IEAVFGQVPRDDQRFIPYTLADQGQRGREPLLIALEHLLKLPDSRFAVSEILDLLDVPAL 501

Query: 456 KFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVP 506
           +  F   E  L+     +E   +R   ++     L        +     +        V 
Sbjct: 502 RRRFGVDEADLATLHRWIEGAGVRWGLDAAQRERLGLPAGLEGNSWRFGLRRMLLGYAVG 561

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              +    +  +    L   +   +  L+       +     +        +  L  V  
Sbjct: 562 EGAALQGIQPYDEVGGLDAALAGPLAVLLERLEVAYAELAEPATPAQWGERLQALLTVFF 621

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
           + H +   L   +  + L                      +     +D   +  +    +
Sbjct: 622 EAHDERDELLLTQLLQLLERWQEHCACAAFAEPLPISVIREAWLGGLDQGGLNQRFLAGA 681

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            +     +  R + F  + L G+N+G +P+  +   F           ++  +       
Sbjct: 682 -VSFCTLMPMRAIPFRLVCLLGMNDGDYPRQQSPLDFDLMRNDYRPGDRSRREDDRYL-L 739

Query: 687 DFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
              + +    L  +   R   +N     S  + +L       +  +    G+  L    +
Sbjct: 740 LEALLSAREQLYVSWVGRSIRDNGERPPSVLIGQLRDHLAAGWRLDPDGDGEALLRALTQ 799

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                 QP  +R     P +     ++++   + ++    + A            +    
Sbjct: 800 --EHPLQPFSRRYFHDAPEQGVDGLFTYAREWREVHREDEIGAPDAEAPLPPLELEGALG 857

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKI 863
                    N +    ++R+     +    +    +  FE + L              + 
Sbjct: 858 LRALAEFLANPVNAFFQQRLKVRFDD--EQLTGNDEEPFELDALDNWKLQFELTERMKRW 915

Query: 864 SHSFLEHEEKIQSSIEKIFVNI 885
                + + +   +  +  V  
Sbjct: 916 VER--DWDAEGLPAQLQAQVER 935


>gi|104779935|ref|YP_606433.1| exonuclease V subunit gamma [Pseudomonas entomophila L48]
 gi|95108922|emb|CAK13618.1| exonuclease V, gamma subunit [Pseudomonas entomophila L48]
          Length = 1160

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 98/962 (10%), Positives = 243/962 (25%), Gaps = 106/962 (11%)

Query: 50  YVPTKRAIQELRSEFI------EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            V +    Q L+          +  G        ++  G  + + +    +L  +  P V
Sbjct: 44  LVQSNGIAQWLKLALAEDSLDDDQGGCGIAAAIDVQLPGSFMWQLYRR--VLGRDEIPEV 101

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           S + +     RL+ +    +     +      L+          LA+ LAD+ D  +   
Sbjct: 102 SLLDKAPLTWRLMRLLPEVIERPHFEPLRRF-LTDDSDLRKRYQLAERLADLFDQYQVYR 160

Query: 164 KKWEDLHALKNEKY-----GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
             W  L    +  +            A   +  ++ W   L ++        +  + +  
Sbjct: 161 ADW--LKDWASGAHVLNTARGERKPLAAGNRWQAELWRILLEDVGEEGMAQSRAGVHQRF 218

Query: 219 AEHLMKGTKGP------IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI-- 270
            E +    + P      +I+ G +         ++ +A      + +     H    I  
Sbjct: 219 IERINSLEQTPAGLPARLIVFGISSLPAQILEALAGLARFSQVLLCVHNPCRHHWGDIVA 278

Query: 271 ------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE----- 319
                      ++               Q++   L  +    R+ +  L +  +      
Sbjct: 279 DKDLLRHQYKRQQRKQGMPMQLDDELLHQHAHPLLAAWGKQGRDYINLLDSYDDPGSYQT 338

Query: 320 --MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS--------DVALIEADNERE 369
               GR  + S+       + +++  +    +   ++ +          V    A + + 
Sbjct: 339 VFSDGRIDLFSEGDPQTLLNQLQDDILELRPLAETREQWPAVDPTKDRSVRFHVAHSPQR 398

Query: 370 EAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL-------TRFGINIDISAG 418
           E   +   L            +   ++    +        +           I   ++  
Sbjct: 399 EVEILHDQLLARFSADPTLRPRDIIVMLPAIDTYAPHIRAVFGQLERHDPRYIPFTLTDQ 458

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRAKNALELVAL 476
                      L  LL           +  L+  P  +  F   E  L      +E   +
Sbjct: 459 GQRGRDPLLIALEHLLKLPDSRFAVSEVLDLLDVPAVRARFAIQESDLPTLHRWIEGSGI 518

Query: 477 RGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL-VDHIL 528
           R   ++     L       ++     +        V   +     E  +    L    I 
Sbjct: 519 RWGLSAEQRASLGLPEGLEQNSWRFGLRRMLLGYAVGVGEGCDGIEPYDEIGGLDAALIG 578

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
             +  L        +     + + W +     LQ   L E      L  +   + L   +
Sbjct: 579 PLVALLDALDIACQALSQPATATQWGERLHALLQIFFLAEDEHDELLLVQ--LQDLRDTW 636

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            +  +         +  +         +    +   + ++     +  R + F  + L G
Sbjct: 637 LETCDAVGLQDLLPLTVVREAWLSGLDQGKLSQRFLAGSVNFCTLMPMRAIPFRVVCLLG 696

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--N 706
           +N+G +P+      F           ++  +          + +    L  +   R   +
Sbjct: 697 MNDGDYPRAQPPLDFDLMASDYRPGDRSRREDDRYL-LLEALLSARDQLYVSWVGRSIRD 755

Query: 707 NIPTIASRWLQRLL------VLGGTDFFDNLKKRGQCYLDWTRKLDYTTK---------- 750
           N    AS  + +L                  +  GQ  L    +                
Sbjct: 756 NSERPASVLVGQLRDHLAAGWQLAGARLGQREDPGQQLLHALTQEHPLQPFSLRYFQKGS 815

Query: 751 ---------------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL-- 793
                                  P  P  +     +  +++  +  P   +  + LK+  
Sbjct: 816 PLFSFAHEWRVLHQQDAQNGEQPPALPAYSSEEPLNLVQLQDFLRHPVRHFFSQRLKVFF 875

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHI 852
           + +     D +      L    ++E +      +       ++           LP    
Sbjct: 876 EALEAPTPDEEPFVLDALQRYGLSESLLGAALADPDNAERALQAQARRLQACGMLPLAGF 935

Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
               +    +     L+   ++      + V     +  E     L G+  R+       
Sbjct: 936 GEALQAELIQPLPDLLQRHRQLLQRW-PMSVEGALPIHFEQGAHRLEGWLGRVYQADDQS 994

Query: 913 VD 914
           + 
Sbjct: 995 LL 996


>gi|217968706|ref|YP_002353940.1| UvrD/REP helicase [Thauera sp. MZ1T]
 gi|217506033|gb|ACK53044.1| UvrD/REP helicase [Thauera sp. MZ1T]
          Length = 663

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/681 (9%), Positives = 170/681 (24%), Gaps = 120/681 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL-SYNLNPPVSNIQR 108
              T +A +E++     I G +      + +   +       +           + +   
Sbjct: 55  ITFTNKAAKEMQERVAHIMGGRVPGGLTVCTFHALGVRIVRQEAKHCGLKPQFSILDASD 114

Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK-NLADIIDIIE-TEEKKW 166
            +++   +    +K           S  +  I+P  A  LA   +A +   +    E+  
Sbjct: 115 TVQIVSDVAGDSDKGIAKQMQWQISSWKNAMITPEEAAQLADNEIASVAARLYKEYERTL 174

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
               A+  +      +   D      + W  +L                           
Sbjct: 175 RAYQAVDFDDLIALPVRLFDEHPEVRERWQNKL--------------------------- 207

Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
              +++     +  A  RL+  ++            D       W     ++  +     
Sbjct: 208 -RYLLVDEYQDTNRAQYRLLKLLSGVRGA--FTAVGDDDQAIYAWRGADVENLKLL---- 260

Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
               +P+  + KL       R  ++                       +T    N  + +
Sbjct: 261 -QQDYPKLKVIKLEQNYRSSRRILEA---------------------ANTVIANNEKLFD 298

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMS---LDENKKKSALITADRNLARRVK 403
            ++ +       + +    +   EA  +A  +           K  A++    + AR ++
Sbjct: 299 KRLWSEHGQGEQIVVTNCRDAEHEAEWVATKITAHKFEHRTRFKDYAILYRGNHQARLIE 358

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
            +L    I   +S G           L + L  +   +D +A    +  P    G     
Sbjct: 359 QQLRNHRIPYVMSGGQSFFDKAEIRDLIAWLRLLVNEDDDLAFIRAITTPRRGIGAATIE 418

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
              A       +                    +        +    +    +  +     
Sbjct: 419 ALGAYAGHRHSS--------------------LFAAVFEEGLTQHLNAKQLQGVQEFAAY 458

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
           ++ +     P            G +    W        +      + +    W   +G+ 
Sbjct: 459 INRLQYR-APREPAAQLLEDLLGAIRYEAWLFEHCDTREAESKWSNVRDFVGWLGRKGEE 517

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                            +    +++   +     +  +      + +     S+ L F  
Sbjct: 518 -----------------DGKNLLELTQTIALMSMLDKEDPDFDGVQMATLHASKGLEFPH 560

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI-YTRS 702
           + L G+ EG+ P  ++ +                +K   +    +      +  +  T  
Sbjct: 561 VFLVGVEEGLLPHQSSID---------------EDKVEEERRLMYVGITRAQRSLNLTWC 605

Query: 703 LRENNIP----TIASRWLQRL 719
            R  +         SR++  +
Sbjct: 606 ERRKSGKEFRTCEPSRFIAEM 626


>gi|254294694|ref|YP_003060717.1| double-strand break repair helicase AddA [Hirschia baltica ATCC
            49814]
 gi|254043225|gb|ACT60020.1| double-strand break repair helicase AddA [Hirschia baltica ATCC
            49814]
          Length = 1198

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 88/854 (10%), Positives = 199/854 (23%), Gaps = 118/854 (13%)

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-------- 220
            L  +                 I    +  +     A        +               
Sbjct: 349  LEQINARAAYERSAALLRISNIVFSDYARQKRRRAAMDFDDLIESAAGLLTTRSMAQWVL 408

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIW 271
              ++G    I++  +  + P   +L++ +           H N   +    D       +
Sbjct: 409  WKLEGGLSHILLDEAQDTSPEQWKLLNALTAEFFSGEGVEHENPRTMFVVGDEKQSIYSF 468

Query: 272  NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG----------------- 314
                 +            +       K  D L   R   + L                  
Sbjct: 469  QGADPEKFLSKRQEFIEDSARAKQENKTPDILMSFRSAPEVLAFVDEVFDTGAFDGEAAF 528

Query: 315  ---NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                  +    R +   +  +            + ++             +E + + E A
Sbjct: 529  SLKPPEDGNIMRHLPFRRGHIGSVELWPLLRPKVNDESTPWDAPLG--QDLETNPKAELA 586

Query: 372  ISIAIALRMSLD--------------ENKKKSALIT-ADRNLARRVKLELTRFGINIDIS 416
              IA  ++  +D                     L+      L   +   L    I +  +
Sbjct: 587  DRIAKWVKNIIDTKQAIFDEGKMRPARPGDVLILVRGRKGGLFDSIIKALKTNNIPVAGA 646

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
              I L  +L    L +L+       D + +A ++  P       +     A N  +    
Sbjct: 647  DRIELLDSLPVQDLLNLIRFALCPEDDLTLAEILTGPFGGLNENDNLYPLAHNRGDESLW 706

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                 S     L      +   ++ +     + + + E      +     I   + P   
Sbjct: 707  SRVLKSEMPSVLPVREFLQGCLERRHIQPYEFLTAVLETQGHDGMDGWQKIQSRLGPPAK 766

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                         ++                    L  +     G  +    S   +   
Sbjct: 767  -----------EPMTALMDRAAGFDAKGPSSLQLFLATIEK--SGGEVKRELSGPQDEVR 813

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             +  +  + ++    ++       K    + L I    E          +      +W  
Sbjct: 814  VMTVHGSKGLEAPIVIVPDTCAATKSGVDNNLLITPEKERDDHTSPPEGMP-----IWSG 868

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN-----IPTI 711
            +  ++  L+  ++    L  A          +      +  +                + 
Sbjct: 869  SAKQDTTLAAKLRL---LADARATREHRRLLYVALTRAKDRLLICGPWSGGVKSKTGHSE 925

Query: 712  ASRW------LQRLLVLGGTDFFDNL-----KKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
             S +      +QRL   G     D+      +              YT      +  +  
Sbjct: 926  TSWFAICHKAMQRLADKGLAQIIDDPNVEPIEGEDNPIAYQFGASQYTDNHAIIENDELD 985

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
               +   +T            P ++       L      +++  R  RG L H ++  L 
Sbjct: 986  YIPDWIGKTVPHESGGSRYAAPSSLLGEEPAVLPPFVKSQEE--RLKRGRLIHTLLQTLP 1043

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKISHSFLEHEEKIQSSIE 879
                     +  H + +            P I    R  +F +     L+  +       
Sbjct: 1044 DIPKADWEKQAMHFLGR-----------DPSIKAEDRIEMFERAID-VLDDPKFDPIFGT 1091

Query: 880  KIFVNIPAKMAIESI------GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL- 932
                 +P    +         G+ + G  DR+ +     V I D+KT             
Sbjct: 1092 NSKAEVPI---VGGNDKKLPKGMLINGRVDRLVVT-DESVLIVDFKTDRPAPAREEDMGP 1147

Query: 933  -IDPQLSLEAAALK 945
                Q++   A L+
Sbjct: 1148 TYTAQMAAYRAVLE 1161


>gi|262282913|ref|ZP_06060680.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA]
 gi|262261165|gb|EEY79864.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA]
          Length = 762

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 82/691 (11%), Positives = 194/691 (28%), Gaps = 124/691 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L +     +  ++    V      R            
Sbjct: 259 MQNILDFEK-----DYPEAKVVLLEENYRSTKTILQAANEVIRNNRNR------------ 301

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                        +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 302 ---------PPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                   G      I D  S     +     N  +   + + +
Sbjct: 413 KRGV--------------------GPGTMEKIRDFASSQEMSLLDASANILLSPVKGKAA 452

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +   + A +L+D            + + +       +    + T      V         
Sbjct: 453 QAVYDFANMLLD-----------LREHLDDYTVTELVEAVLEKTGYAAALVAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  S  ++   +    +  L          ++SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNSSD-ESGLDKLSRFLNDLALIADTDDGDQESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + L G+ E V+P + A         +  L               +     
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRASEDEDELEEERRLA--------------YVGITR 606

Query: 694 TRHLIYTRSLRENN-----IPTIASRWLQRL 719
              ++Y  +               SR+L+ +
Sbjct: 607 AEKILYLTNANSRMLYGKTNYNQPSRFLREI 637


>gi|50983083|gb|AAL79571.2| exonuclease V gamma subunit RecC [Pseudomonas syringae]
          Length = 1149

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 95/964 (9%), Positives = 245/964 (25%), Gaps = 101/964 (10%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79
           L   +V   R  PL P  L +    V +    Q L+          ++ G        ++
Sbjct: 22  LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDARDDDLGGCGIAAAVDVQ 79

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             G  + + +   ++L     P  S + +     RL+ +    +     +      L+  
Sbjct: 80  LPGSFMWQLYR--VVLGSEQIPATSLLDKAPLTWRLMRLLPALIDQPHFEPLQRF-LTHD 136

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN---EKYGMWWLLAADFLKIASKYWT 196
                   L++ LAD+ D  +     W +  A                +      ++ W 
Sbjct: 137 SDLRKRYQLSERLADLFDQYQVYRADWLEDWAAGRHQLRNARGESPALSPANCWQAELWR 196

Query: 197 ERLVELNASSPVGYQIALMRAE------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
             L+++        +  + +         E    G    +I+ G +         ++ ++
Sbjct: 197 ALLLDVGEEGMSQSRAGVHQRFMDKINSLEQAPPGLPARVIVFGISSLPAQALEALAGLS 256

Query: 251 NHPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
                 + +     H  + I             +       +        Q++   L  +
Sbjct: 257 RFSQVLLCVHNPCRHHWSDIVADKDLLRHQYKRQARKAGMPAALDLDILHQHAHPLLAAW 316

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD---------------MRNTDILEN 347
               R+ +  L +  +    R+                                ++  E 
Sbjct: 317 GKQGRDYINLLDSYDDPNSYRAAFRDGRIDLFSEVQPLNQLNQLQDDILELRPLSETREL 376

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403
                      +    A + + E   +   L     +      +   ++  D +      
Sbjct: 377 WPAVDLDQDQSIRFQVAHSAQREVEILHDQLLARFAKYPQLQPRDVIVMVPDIDSYAPHI 436

Query: 404 LEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +        R  I   ++             +  LL           I  L+  P  +
Sbjct: 437 RAVFGQIERDDRRLIPYTLADQGQRGRDPLLIAIEHLLKLPDSRFPVSEILDLLDVPALR 496

Query: 457 FGFP--EKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPH 507
             F   E+ L      +E   +R   N+     L       ++     +        V  
Sbjct: 497 ARFNVQERDLPTLHRWIEGAGIRWGLNAEQRAGLGLPAHLEQNSWRFGLRRMLLGYAVGS 556

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
            ++    E  +    L   ++  +  L+      +      ++       +  L  +   
Sbjct: 557 AEACDGIEPYDEIGGLDAVLIGPLVALLDALEIAHQELSRPALPGQWGERLQALVQLFFQ 616

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
              +  +    +  +   +        G   +       +     +D   +  +    + 
Sbjct: 617 AETEHDDYLLAQLEELRETWLETCELVGLQDELPLTVVREAWLAGLDQGKLSQRFLAGA- 675

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
           +     +  R + F  + L G+N+G +P+      F           ++  +        
Sbjct: 676 VNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRPGDRSRREDDRYL-LL 734

Query: 688 FEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV--------LGGTDFFDNLKKRGQC 737
             + +    L  +   R   +N    A   + +L           GG D    + +    
Sbjct: 735 EALLSARDQLYISWVGRSIRDNSERPACVLIGQLRDHLASGWQLAGGGDLLQAMTQEHPL 794

Query: 738 YL--------------DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                            + R+     +               Q    + ++++  + +P 
Sbjct: 795 QPFSTRYFHEGNSNLFSYAREWQRLHEPQPAPVAPGILTAHEQEEPLNLTQLQDFLRNPV 854

Query: 784 AVYARRILK-------LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
             +  + LK       +          D   R TL  +++   + +            ++
Sbjct: 855 RHFFSQRLKVFFEAAEVPLADEEPFVLDALQRYTLSDSLLEAALAQPDQPEQALHTRALR 914

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
                          +          +   +     +   ++    +N    ++ ES G+
Sbjct: 915 LQGSGLLPMAGFGESLQQELIEPLPDVLQRY-----QQLLALWPTPLNSALPVSFESNGL 969

Query: 897 HLTG 900
            L G
Sbjct: 970 TLEG 973


>gi|76787976|ref|YP_329845.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909]
 gi|77407064|ref|ZP_00784070.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B]
 gi|77413012|ref|ZP_00789214.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515]
 gi|76563033|gb|ABA45617.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909]
 gi|77160910|gb|EAO72019.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515]
 gi|77174333|gb|EAO77196.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B]
          Length = 759

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 89/697 (12%), Positives = 205/697 (29%), Gaps = 126/697 (18%)

Query: 46  SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLL-----LSYNL 99
           ++     T +A +E+R          + T+   I +   +       +        ++ +
Sbjct: 54  NILAITFTNKAAREMRERAIALNPATQDTL---IATFHSMCVRILRREADYIGYNRNFTI 110

Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
              V   ++   + R+I                ++      S    I  AKN  D++D I
Sbjct: 111 ---VDPGEQRTLMKRIIKQLN-----------LDTKKWNERSILGTISNAKN--DLLDEI 154

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             E++  +    +               +    K + E L    A       +  +R   
Sbjct: 155 AYEKQAGDMYTQV---------------IAKCYKAYQEELRRSEAMDFDDLIMMTLRLFD 199

Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           ++       +     I +     +  A  +L+  +A+      V+   D       W   
Sbjct: 200 QNKDVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGA 257

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             ++            +PQ  +  L +     ++ ++   NV N    R           
Sbjct: 258 DMQNILDFEK-----DYPQAKVVLLEENYRSTKKILQAANNVINHNKNRRPK-------- 304

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSAL 391
                        K+         +    A+NE+EEA+ +A  +   + E     K  A+
Sbjct: 305 -------------KLWTQNDEGEQIVYHRANNEQEEAVFVASTIDNIVREQGKNFKDFAV 351

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +      +R ++  L +  I   +  G    +      + + LN +   +D ++   +V 
Sbjct: 352 LYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLNILANTSDNISFERIVN 411

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P    G       R+                             A ++N + +    + 
Sbjct: 412 EPKRGVGPGTLEKIRS----------------------------FAYEQNMSLLDSSSNV 443

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
           +    K  A   V  +   I  L +   +   T    ++ D T           L     
Sbjct: 444 MISPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQNTL---ES 500

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              +   EE  +++  F    E     +         +  L           +++ + ++
Sbjct: 501 QARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAEVTLM 560

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + L G+ EGV+P + A              ++ A++   +    +   
Sbjct: 561 TLHAAKGLEFPVVFLIGMEEGVFPLSRA--------------IEDADELEEERRLAYVGI 606

Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723
                +++     TR+L         +R+++ +    
Sbjct: 607 TRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDEL 643


>gi|325002209|ref|ZP_08123321.1| ATP-dependent DNA helicase [Pseudonocardia sp. P1]
          Length = 815

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 68/725 (9%), Positives = 177/725 (24%), Gaps = 71/725 (9%)

Query: 4   KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLAS-VTIYVPTKRAIQELRS 62
           ++  V               A    T+     +      +L   V     T++A Q+L +
Sbjct: 20  EQAAVIAAPAGPALVVAGAGAGKTETMAARVVWLVATGRVLPEQVLGLTFTRKAAQQLGT 79

Query: 63  EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
                  + +      + L D+         LL+        +      +    L    +
Sbjct: 80  RVRSRLRRLAGS----RLLDDLDPTGARRAALLAGEPTVSTYHAYAGRLVGEHALRLPAE 135

Query: 123 LPDIIKDLYPESPLSLPISPANAIWL---------AKNLADIIDIIETEEKKWEDLHALK 173
             + +        L+  +    A  L            L  +   +     +  D+  L 
Sbjct: 136 PANRLLGPTATWQLAHRVVSTWAADLEIDRVPATVTGYLLSLAGELGEHLVEPADVERLT 195

Query: 174 NEKYG--MWW--------------------LLAADFLKIASKYWTERLVELNASSPVGYQ 211
                                               L    + +  R     A       
Sbjct: 196 ARMLPVLEHAPPGKRQRAEPSAGYKARIAGQRMRLELLPLIEEFARRKQAEQAMDFSDQM 255

Query: 212 IALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI--------- 257
               R          + +G    +++     +  A   L+  +   P G           
Sbjct: 256 ALAARIAEADPEVGRIERGQYRAVLLDEYQDTGHAQRVLLRALFGVPPGLAPEPEEPEHR 315

Query: 258 -VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V    D       W   +  +     ++    +     +  LL       E +      
Sbjct: 316 SVTAVGDPCQSIYGWRGASAGNLARFRTDFPTPSGGPAPVHGLLTSFRNPAEVL------ 369

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                  +  +S+       +         +         + +  + A+         + 
Sbjct: 370 -----ALANRVSEPLRTAPGAVRVGELRPLDGAGPGDVRAALLPDVAAEIAWAADGIASR 424

Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
               + +     +A++   R+    +   L    + +++     L +T     L S L  
Sbjct: 425 WHAGADEGEPPTAAVLVRRRSDMDALAAALRDRRVPVEVVGLGGLLSTPEVRDLVSALRV 484

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           +       +   L+  P  + G  +      +    + +          +  + L L  +
Sbjct: 485 VTDPLAGPSAVRLLTGPRWRLGIADLAALWQRARELVPSRPAR---PGPLGPEELALGAL 541

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
              +              E    +    D I +    L   +    +   +L ++D  + 
Sbjct: 542 PGDEAEQAGLADALDDPGEPDRYSQAGFDRIRRIGRELSHLRARAAAPLTDL-VADVERT 600

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +  ++ +         +L    +     +                ++++D   +  +G 
Sbjct: 601 LLLDVETMARPGPTGRAHLDAFADVVADFA-----AGADVPSLPALLDYLDTAEQAEEGL 655

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
           T          + IL    ++ L ++ + +  L   V+P       +L       + L+ 
Sbjct: 656 TPGEVEVSPDRVQILTVHAAKGLEWEIVAVPHLVAQVFPGRKMSGSWLKDPSDLPVPLRG 715

Query: 677 AEKYI 681
               +
Sbjct: 716 DADDL 720


>gi|296532805|ref|ZP_06895482.1| excision endonuclease subunit UvrD [Roseomonas cervicalis ATCC
           49957]
 gi|296266866|gb|EFH12814.1| excision endonuclease subunit UvrD [Roseomonas cervicalis ATCC
           49957]
          Length = 745

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 68/693 (9%), Positives = 177/693 (25%), Gaps = 125/693 (18%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T +A +E+R     I G  +  L  + +   +                     
Sbjct: 67  QVLAVTFTNKAAREMRERVSAILGHPAEGL-WLGTFHALCARM----------------- 108

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +   +  +         + L  II   +     
Sbjct: 109 LRRHAELVGLTSNFSILDTDDQMRLLKQVMEASGVDMKRWPP--QALMGIIQRWKDRGLT 166

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
              + A ++  +      +          + ERL +LNA+      + ++     H    
Sbjct: 167 PARITAAEDSDFANNRARSL------YAAYQERLKQLNATDFGDLMLHVVEVLRGHPDVL 220

Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNGAI--VLPGLDCHIPTAIWNTITEKS 278
            +       I++     +       +  +A  PN     +    D       W     ++
Sbjct: 221 AQYHRNFRYILVDEYQDTNTVQYLWLRLLAQRPNQTERNICCVGDDDQSIYSWRGAEVEN 280

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +   +T         +  L+        +   ++ +  ++              
Sbjct: 281 ILRFEKDFPGAT---------IVRLESNYRSTAPILAAASGLIAKN-------------- 317

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADR 396
                    +          V ++   +  EEA  +   +  +  + +   + A++    
Sbjct: 318 -SGRLGKTLRPGRKDASGEKVRVVSLWDSEEEARMVGSRIEAARRDGQSLAEIAILVRAG 376

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
              R  +  L   GI   +  G             + L  + +  D +A   +V  P   
Sbjct: 377 FQTRAFEERLITLGIPYRVVGGQKFYERAEIRDAMAYLRVVNQPADDLAFERIVNTP--- 433

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                               +       +  L     ++                +  + 
Sbjct: 434 --------------------KRGLGDTALRQLHEAAREQGVPLVAAAGGMVASGGMRPKP 473

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
           ++    L++   +    L        +                        +      +W
Sbjct: 474 RQALHELLEGFARWREMLSREGHVVVAATLL--------------------DESGYTEMW 513

Query: 577 FEEEGKTLSSLFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
            +++          + E    +    +   +++ +  +++ +    +  +   + ++   
Sbjct: 514 KQDKSPEAPGRLDNLKELLRAMAEFESLAGFLEHVALVMEND----EQSEDGKVSLMTLH 569

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L FD + L G  EG++              Q  L+    +    +    +      
Sbjct: 570 AAKGLEFDMVFLPGWEEGLF------------PHQRALDEGGEKGLEEERRLAYVGITRA 617

Query: 695 RH-LIYTRSLRENN----IPTIASRWLQRLLVL 722
           R     + +            I SR+L  L   
Sbjct: 618 RKYCTISHAANRRIYANWTSAIPSRFLDELPPE 650


>gi|329296292|ref|ZP_08253628.1| exonuclease V subunit gamma [Plautia stali symbiont]
          Length = 1126

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 87/764 (11%), Positives = 196/764 (25%), Gaps = 80/764 (10%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            LL    VE  +  PL    LA+  + V +    Q L+ E        + I         
Sbjct: 11  DLLKDLAVELIKLQPLA-DPLAAEQVLVQSPGMAQWLQMELANRFNIAANI--DFPLPAS 67

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            +   F   L      +           + RL       L +        S L       
Sbjct: 68  FIWSMFVKVLPDIPEESAFTKASMSWKLMHRL-----PVLLEQEAFQPLRSYLHDDDDQR 122

Query: 144 NAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKYGMWWLLAA-DFLKIASKYWTER 198
               L+  +AD+ D        W    E    +        W  A    L   ++   + 
Sbjct: 123 KLYQLSARVADLFDQYLVYRSDWLNRWERGEQVDRLSDAQQWQAALWRDLVEFTRSLGQP 182

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           +               ++A  +           + I G +   P   + +  +  H +  
Sbjct: 183 MWHR-----ANLYARFIQALEQASTPPPGLPQRVFICGISALPPVYLQALEALGRHIDIH 237

Query: 257 IVLPGLDCHIPTAI--WNTITEKSTNITSSNTTYSTHPQYS----LAKLLDFLDIKREDV 310
           ++      H    I  +  + +  +       +  T P +        L + L  ++   
Sbjct: 238 LLFTNPCRHYWGDIQDYAFLAKLQSRQRLRLHSQETQPLFRDPDAAPALFNELGEQQLTN 297

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP-------------------- 350
             L +          ++S+     +  D       +N +                     
Sbjct: 298 PLLASWGKLGRDNLFLLSQMESAANDIDAFVEMSPDNLLHCLQADLLNLDDRAVIGLSAG 357

Query: 351 ---------NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRN 397
                     +      + L    + + E   +   L   ++ +     +   ++ AD +
Sbjct: 358 ELADSMDKRRLDPHDRSITLQVCHSAQREVEVLQDHLLALMEADPELKPRDIIVMVADID 417

Query: 398 LARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                             +   IS             L SLL           +  L++ 
Sbjct: 418 SYAPFIQAAFASAPPERYLPFAISDRRASQAHPAILALLSLLVLPDSRFASEEVLALLEV 477

Query: 453 PLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK--------SLVLDRIATQKNN 502
           P     F   E  L   +  +    +R   +   +  L              +       
Sbjct: 478 PALAQRFSVEESGLRLLRRWVMESGIRWGLDDASVEALALPVTGQHTWRFGLQRMLLGYA 537

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
               +   +      E + L+ +        L    + +       ++++W  L    + 
Sbjct: 538 LESRNGDWQGILPYDESSGLIAELAGNLAELLARLDSWRTRLAQTRTLAEWLPLCRELID 597

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
           +    +      L   E       +  + ++             D +   +D + +  + 
Sbjct: 598 SFFSGDVDSEAALLLVE--TQWQEIIEQGMQAAYQQPIPVTLLRDELRSRLDQQRISQRF 655

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                +     +  R + F  + L G+N+GV+P+  A   F     Q+    ++      
Sbjct: 656 LAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLAPLGFDLMQQQTRKGDRSRRDDDR 714

Query: 683 QAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGG 724
                  + +  + L  +   R  ++N     S  +  L+    
Sbjct: 715 YL-FLEALISAQQQLYISYIGRAIQDNTERYPSVLVTELVDYLA 757


>gi|323491620|ref|ZP_08096799.1| exonuclease V subunit gamma [Vibrio brasiliensis LMG 20546]
 gi|323314196|gb|EGA67281.1| exonuclease V subunit gamma [Vibrio brasiliensis LMG 20546]
          Length = 1152

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 111/949 (11%), Positives = 245/949 (25%), Gaps = 127/949 (13%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            +L   LVE  R +PL         I V +    Q L+ E  +  G  ++I      L  
Sbjct: 11  DVLKSLLVELVRLNPLA-NPFEQEQILVQSPGMSQWLKMELAKEFGVAASIE---FPLPA 66

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                   ++L         +      +L  ++      L D  +    +  L      +
Sbjct: 67  TFIWNMFTEVLPDVPKRSAFNKESMTWKLMHILPG----LLDQPQFEPLKHYLEQDEDSS 122

Query: 144 NAIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
               L++ +ADI D            WE    +   +    W        I  +   +  
Sbjct: 123 KLYQLSEKIADIFDGYLVYRPEWIASWEAGQTVLELEDEHPWQ------PILWQALYDHT 176

Query: 200 VELNA--SSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNG 255
           V L              +                + + G T   P     +  +  H + 
Sbjct: 177 VALGQSPYHRANLYEHFIDTLESSQANFDHLPKRLFVFGITSLPPRYMDALKAIGEHIDV 236

Query: 256 AIVLPGLDCHIPTAIW-------------------------NTITEKSTNITSSNTTYST 290
            ++      +    +                          +  +E+       N     
Sbjct: 237 HLMFTNPCRYYWGEVRDRKFLARLAAKHRKHVVWNQDHSEQHGESEQLKGSLEDNVIDEL 296

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMY-------GRSMVISKSFLPPDTSDMRNTD 343
           H       LL  +     D   L +              R  ++ +        +    D
Sbjct: 297 HTDAVGNSLLASMGKLGRDNMYLLSQLESNEIEAFVDVERDSLLHQLQADILNLEEHQDD 356

Query: 344 ILENKIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
              +   + Q        + L    +   E   +   L    D +     +   ++ +D 
Sbjct: 357 HQLDSSSHKQVVLADDKSLTLHACHSPMREVEVLHDQLLSMFDADPSLKPRDIIVMVSDI 416

Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           N        +         I   IS       +   +    L+N          +  L++
Sbjct: 417 NAYSPAIQAVFGNAPGERFIPYSISDRTADQESPILNAFMQLVNLPNTRCLASELLELLE 476

Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK----SLVLDRIATQKNNTHV 505
            P  LA+F   E     AK  +E   +R   NS    + +         +   ++     
Sbjct: 477 TPAVLARFELTEDEFILAKQWVEESGIRWGLNSSTSQEFELPATEQNTWQFGIERMLLGY 536

Query: 506 PHWQSRLSEEDKELAVLLVDHI----LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
               S    E    A+   + +     +    L  +    +     L +          L
Sbjct: 537 AMPHSAGLFESNSGALAPYNEVQGMGAELAGKLAHFIETISDYRQKLQLIQSIDSWREVL 596

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +  D       L  E   K++    + + E  +           II + +  +    +
Sbjct: 597 TVLLDDF--FSVELEGEAALKSIRDTLANLKEQLTDAAFEQNLAPAIIAQYLHNKLAGTR 654

Query: 622 IEKS---STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
           + +      +     +  R + F  + L G+N+G++P++     F     ++    ++  
Sbjct: 655 VSQRFLAGQVNFCTLMPMRSIPFRAVCLLGMNDGIYPRSVPPEGFDLMNGRAKPGDRSRR 714

Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGTDFFD 729
                      M +  + L  +   R   +N   + S  +  L+        L G +   
Sbjct: 715 DDDRYL-FLEAMLSAQQTLYISYVGRSIQDNTERVPSVLVSELMEYCQQNYCLQGDESLP 773

Query: 730 NLKKRGQCYLDWT---------------RKLDYTTKQPHYK------------RPKPFPP 762
           +     +                     ++  Y  +                 + + +  
Sbjct: 774 SDDSGNKLLRQLVNSHSMVPFSANAFIGKQPSYAKEWLPAANRQGQSGGEFNRQLQDYLL 833

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819
               P      E+++    P   +  R LK+     +P  + D      G   + +   L
Sbjct: 834 DATYPLELDLVELQRFWRLPVQYFFNRRLKVMFEPPLPVMEDDEPFVLDGLESYQMRDGL 893

Query: 820 IKKRINKNT---PEINHLMKQIIDSHFEKENLPPHID---IIWRHLFHK 862
           +   +        +   ++K  ++    +  LP           +    
Sbjct: 894 LDSLLKHRLSGSQDTKAIIKTFVEQQRAQGKLPVGAFGDIEFETNRVQA 942


>gi|315604923|ref|ZP_07879981.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
            F0310]
 gi|315313462|gb|EFU61521.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
            F0310]
          Length = 585

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/595 (10%), Positives = 148/595 (24%), Gaps = 95/595 (15%)

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK-----NSTCGNLSIS 551
            A    +          +E            + + +                       + 
Sbjct: 20   ADLVADPRTWRPTIEEAERAGGKRARAASALARPLEVASRLWDLGMNGSNRPQERLWELW 79

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            +   +           +          +    L  +     +      A A    ++ + 
Sbjct: 80   EAAGVADEWRSRAIASDESSGWYDDQLDAVVALLRVADVWQQRNPATSA-AQFAAELASG 138

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
             +  +T+     + + + +L   ++   +++ ++L GL +G WP    ++  L   + +D
Sbjct: 139  TVPIDTISRVGVRPAGVEVLTPAQAMGRHWEVVVLAGLQDGAWPNLRLRDRILRADLLAD 198

Query: 672  LNL-------------------KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
                                    A     +           R ++   +          
Sbjct: 199  AGAGRTSVGEDGREELIDSVRAARAAVLDDEYRLFVAAVTRARRVV--HAGAVRAEDAAP 256

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWT------------------------------ 742
            S +   +  L GT    +L          +                              
Sbjct: 257  SVFFDLVARLAGTPRVGDLVPVDPVDAPLSLSGHIADLRARAAAPDDPADADLAATLLAL 316

Query: 743  -----RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                        +                    S S+ ++ +  P   +   +       
Sbjct: 317  LAREGIASAQPHRWLGAGGTPTSARDYRGDIVLSPSQFERALVCPLRWFLTTV------G 370

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                       GTL H +  E       + T  +   + ++        NL      +  
Sbjct: 371  AEGTANAAASLGTLVHAVAEENPHGTAEELTEALEARINELG------YNLDTWAGRVAD 424

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
               H I  +   +   +      + V    +  +E  G+ + G  DR++ +  G V +TD
Sbjct: 425  RRAHAIVDNLASY---VVGVPGDVDVEETVEATVE--GVTIRGRMDRLEHVDEG-VRVTD 478

Query: 918  YKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
             KTG     + + +  +PQL+    AL A                  +            
Sbjct: 479  LKTGKGGYTKASVR-DNPQLAAYQMALIASGR--------------SVAGARIALLGGAK 523

Query: 978  KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
             +      L  + L+  ++ V  +  G +      R S+++     +D L    E
Sbjct: 524  PQILDQPPLRGQELEKWLDCVREVALGARGPYFQARPSQEACRYCSFDRLCPARE 578


>gi|227357154|ref|ZP_03841523.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906]
 gi|227162686|gb|EEI47653.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906]
          Length = 718

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/686 (9%), Positives = 158/686 (23%), Gaps = 123/686 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--VSN 105
              T +A  E+R    ++ G          I +   +      A  L +        + +
Sbjct: 60  VTFTNKAAAEMRHRIEDLIGTSQGGMW---IGTFHSLAHRLLRAHYLDAGLPQDFQIIDS 116

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +   + R++                                           + E  +
Sbjct: 117 DDQYRLIRRIVKSMALDDKQWPPRQGMWYINGK---------------------KDEGLR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +    N     W            + + E              +             
Sbjct: 156 PQHIQTYGNPVETTWLK--------VYQAYQEACDRAGLVDFAELLLRAHELWLNKPQIL 207

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A      +++   D       W     ++  
Sbjct: 208 EHYQHRFTNILVDEFQDTNRIQYAWIRMLAGQTGKVMIV--GDDDQSIYGWRGAQVENIQ 265

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
              +                             G  +  +       S      +     
Sbjct: 266 NFLNEFP--------------------------GAETIRLEQNYRSTSNILKAANALIAN 299

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398
           N+D L   +         ++L  A N+ +EA  +   ++   +E       A++      
Sbjct: 300 NSDRLGKNLWTEGAEGEPISLYCAFNDLDEARYVVGRIKRWHEEGGALADCAILYRSNAQ 359

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L +  +   I  G             S +      +D  +   +V  P    G
Sbjct: 360 SRIMEEALLQANMPYRIYGGQRFFERQEIKDALSYMRLTANRHDDASFERVVNTPTRGIG 419

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                + R                                 ++N       +    E K 
Sbjct: 420 DRTLDVVRQV------------------------------ARDNQITLWESALQVIEHKM 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           LA   +  I + +  + T          ++      + +            +    +   
Sbjct: 450 LAGRAIAAIARFLELIETLANETADMPLHVQTDRIIRDSGLKAMYEQEKGEKAQARIENL 509

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           EE  T +  FS   E    +   A      ++                 + ++    ++ 
Sbjct: 510 EELVTATRQFSYQDEDEDLMPLQA-----FLSHAALESGEGQADAYQDAVQLMTLHSAKG 564

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F  + + G+ E           F S++   +      E+ +        M    + L 
Sbjct: 565 LEFSQVFIVGVEE---------GMFPSQMSLDEGGRLEEERRLAYVGVTRAM----KKLT 611

Query: 699 YTRSLREN----NIPTIASRWLQRLL 720
            T +         +    SR++  L 
Sbjct: 612 LTYAENRRLYGKEVSHRPSRFIGELP 637


>gi|322515453|ref|ZP_08068441.1| exodeoxyribonuclease V gamma subunit [Actinobacillus ureae ATCC
           25976]
 gi|322118499|gb|EFX90744.1| exodeoxyribonuclease V gamma subunit [Actinobacillus ureae ATCC
           25976]
          Length = 1105

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 80/768 (10%), Positives = 184/768 (23%), Gaps = 76/768 (9%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +   L+      N   +P N        I V +    Q L+ +  +  G        
Sbjct: 10  LSSLAEMLI-HLQKANPNSNPFNTEA-----ILVQSVGMAQWLQMQIADSIGVA------ 57

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL-------ELARLILIWRNKLPDIIKDL 130
               G+      T+ L   Y +  P    + +         L RLI    +        L
Sbjct: 58  ----GNYDFLFPTSFLWQQYRVLFPSLPKENIFKRSSVTWRLMRLIPAHLD--TAEFSTL 111

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW----------EDLHALKNEKY--G 178
                            L+  +AD+ D        W            L  + +      
Sbjct: 112 KSYLQQDARQYQLKLYQLSTKIADLFDQYLVYRPHWLVHWENNQLEAVLAEIMHSNVFKV 171

Query: 179 MWWLLAADFLKIASKYWTERLVELNA------------SSPVGYQIALMRAEAEHLMKGT 226
                    L+  +  W   + ++              +         +        +  
Sbjct: 172 KNEQEILANLQWQAILWNALIDDIKLDSDESVFITSHRAYLQDQYFQKLDNLTAQEKEKL 231

Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN--TITEKSTNITSS 284
              I I G +        ++  ++ H +  +                  + + +     S
Sbjct: 232 PQRIFIFGISSLPATQLAVLKKLSEHCDIHLFFLNPSQEYWGDSVEDSALEKLALKQQLS 291

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS-FLPPDTSDMRNTD 343
            T  +   +    +LL     +  +           Y   +                   
Sbjct: 292 ETDLAALLEKQGNQLLTMWGKQGREFLAQLVEQEFDYSLEVFDPYVGETNLIKLKNAILA 351

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLA 399
               +   + +    +      +   E   +   L    ++N     K   +++AD +  
Sbjct: 352 FNNAQTFELDEQDQSLQFHSCHSIMREVEVLHNYLLQLFEQNPALTPKDIIVMSADIDKY 411

Query: 400 RRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +           I   +S     +     S   SLLN      +   +  L+  
Sbjct: 412 APYINAVFSRFDHKDPRRIPFTLSDQKATAVDPIISSFLSLLNLKESNFNAEVLLDLLDV 471

Query: 453 ----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                  +    + Y  R       +            +  S            +     
Sbjct: 472 NAIRSRFRIQSDDIYTLRHWIKEVGIRAGLTIEQSQWQNYNSWQNGLTRLLLGTSLKEEN 531

Query: 509 QSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                      +  L   ++  +   L      +     + S+  W +     + +  LD
Sbjct: 532 GIWQDSIGFNESYGLTSELVGYLCHYLEKLSEWQQFIQASHSLDLWQQKLTELISDFYLD 591

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
           +     +L   +   TL S+  KI       + +      ++   +           +  
Sbjct: 592 DTETFDSLSMLQ--TTLQSVLEKIENARFEDEISVEILALLLQENL-NTQQNSLQFLAGK 648

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
           +     L  R + F  + L G+NE  +P+  + N F           +            
Sbjct: 649 VSFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSFDLMQYAPKKGDRARRDDDRY--LF 706

Query: 688 FEMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLK 732
            E     + +   +   +   +N   + S  + +LL        ++ +
Sbjct: 707 LEALLSAQEIFYVSYVGQSVTDNKVRLPSVLVAQLLDYISEHLSESAQ 754


>gi|254559023|ref|YP_003066118.1| ATP-dependent DNA helicase [Methylobacterium extorquens DM4]
 gi|254266301|emb|CAX22062.1| putative ATP-dependent DNA helicase [Methylobacterium extorquens DM4]
          Length = 1139

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 101/920 (10%), Positives = 204/920 (22%), Gaps = 140/920 (15%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             TL+          +   S+ +   + +A  EL      ++  ++     I +      +
Sbjct: 222  RTLIRRVTSLIDEGIDPNSILVLTFSNKAAGELMDRLA-LSHPEAAASVWIGTFHAFGLD 280

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                       L P    + +   +  L  +      D  +DL+                
Sbjct: 281  IVR-RFHDRLGLPPGPRLVDKATAITMLEEVVPTLDLDHYRDLWDPEENL---------- 329

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKN-------EKYGMWWLLAADFLKIASKYWTERLV 200
                +   I   + E         L         ++  M     A    +    +   L 
Sbjct: 330  --SEILAAISRAKDELVGPVRYAELAEDMKLKASDETSMLRARRAGEEALVYAAYERLLA 387

Query: 201  ELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
            + +A       +  +R  AEH             I++        AT R+++ +A    G
Sbjct: 388  DNDAVDFGDLILKPVRLMAEHPEVAKALALRHRHILVDEYQDVNFATVRMIAALA-ADRG 446

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
              +    D       +   T  S            +P+ +   L      + E +     
Sbjct: 447  ERLWVVGDARQSIYRFRGATSASMTAFK-----EDYPKAADGALTVNYRSRGEIIDTFTA 501

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
             +  + G   +   S  P   +  R   I E   P+ +      ++ EA+          
Sbjct: 502  FATSVAGFKPLGDLSLKPDRGTSGRRPAIYEAGTPDDEVALVAASVAEAE---------- 551

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                 +     +  A++    +        L   G+ +      PL        L  LL 
Sbjct: 552  -----AAGVAYRNQAILCTANDRLAEFAEGLAARGVPVLYLG--PLFERPEIKDLLCLLA 604

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
                                                    +R        M L  + +  
Sbjct: 605  LFHDPRAA------------------------------TLVRVAILPEIGMGLDDVAVVA 634

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
             + +   T    W       D      L       +  L              +I+    
Sbjct: 635  ASLRHAATEPLAWLD-----DAVSLEALSAGGRAALGRLRNACAGFERRAHPWTIASALV 689

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI-- 613
                  +        +   L     G  +    + +    S  +    E    I RLI  
Sbjct: 690  ----LDRLGIARRIGEATTLGDRMAGVAVWQFLNFLRSLPSEGEFPTYEASRQIRRLIRL 745

Query: 614  ----DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL-------NEGVWPKNTAKNP 662
                          +   + ++    S+ L F+ +   GL                    
Sbjct: 746  KEDRSLRQFPDAALELDAVRLMTLHGSKGLEFELVHAPGLITTGLPRKAKPPDCPPPDGL 805

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLL 720
                   + +   T      +A   F + +  R  +        +       S +L+ + 
Sbjct: 806  IAGSEGMTGIEACTVGHDEQEACLFFVLLSRARDDLRLYRSTLLKGGKKRSPSDYLKHIA 865

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
               G                    LD   +        P       P       I     
Sbjct: 866  GTLGPAPV----------------LDRLPELAGEPASAPVSVAWDVPVELDHRHIDSYER 909

Query: 781  DPYAVYARRILKL-DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                     +L L                G +   +       +             +  
Sbjct: 910  CGLRFLYTYVLGLGGRRDENPYMRMHNAVGEMVDWLDRNFDAGKAEP------EGFAEAF 963

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFL---EHEEKIQSSIEKIFVNIPAKMAIESIGI 896
            +  +       H          +    FL     E   Q          P  +   + G 
Sbjct: 964  EDAWGTHGPADHGHAEAYRRIAEEMLRFLVGMRDEAGRQP---------PLALRWPAGGG 1014

Query: 897  HLTGFA-DRIDLLKSGFVDI 915
            H+   A D +     G + +
Sbjct: 1015 HVLTRAHD-VVRTPDGRLVV 1033


>gi|159903622|ref|YP_001550966.1| exodeoxyribonuclease V subunit C 125 kD polypeptide
           [Prochlorococcus marinus str. MIT 9211]
 gi|159888798|gb|ABX09012.1| possible exodeoxyribonuclease V subunit C 125 kD polypeptide
           [Prochlorococcus marinus str. MIT 9211]
          Length = 1105

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 86/756 (11%), Positives = 203/756 (26%), Gaps = 77/756 (10%)

Query: 23  PALLNGTLVENFRYDPLNPLLLAS-VTIYVPTKRAIQELRSEFIEITGKKSTI---LPII 78
              L   L E  R    NP  L+  V I V T    + L  E  +I G  + +    P  
Sbjct: 10  AEWLANVLAEQLR---ANPPGLSENVEIVVNTWPTGRWLGEEIAKINGISALVRFPFPAA 66

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL-ELARLILIWRNKLPDIIKDLYPESPLS 137
           +    +V +    +++   +       I  +L  L  L+     +   +++         
Sbjct: 67  QLKT-LVRKFLGIEVINDDDPWEANQLIWPILNSLPELLQK---EEAGVLQKWLERDLSQ 122

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW-------------LLA 184
                 +   LAK +A   D                      WW                
Sbjct: 123 SGKLSRDEWQLAKTIAYTFDEYIMYRPDV----------ISDWWGTENEINNLKSKLPKY 172

Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244
             +  I      +R+ +      V    + ++             + I G     P    
Sbjct: 173 IQWQPILINLLKQRITQEPFGLQVRNVASKLKKGIAPKQNLPSD-LRIFGINSLAPVQLE 231

Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
           L+  ++      + L      + +       E       +N       +  L   L  + 
Sbjct: 232 LIQALSCIMEVKVFLLTPCKDLWSRCKTKREEYGEGWKVANDKLWLLNKQRLEATLGRMG 291

Query: 305 IKRE---------DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
            + E          +             ++ ++K   P     ++   +    I  +Q+ 
Sbjct: 292 SEFEQLLEGSGEYQLGEWDEKDLFAMPATIALNKQRKPTLLEQIQQRLVTNECIEPLQRS 351

Query: 356 FSD--VALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLELTRF 409
             D  ++  E    + +   +   +   L    +   K   ++T        +   +   
Sbjct: 352 LDDSSISFTECPGPKRQIQIVRDQILQQLALNKNLEPKDILIMTPQVEKFAHLIPSIFND 411

Query: 410 GI------NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPE 461
                      I+          +  +  L+           +  L+ +P+ K  +   +
Sbjct: 412 VSATGVTLPWKITDRSQYDQPGLTQCIILLMEIACTRLTASNLDQLLTNPVIKDLYKLDD 471

Query: 462 KYLSRAKNALELVALRGN-----KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
             + +  N L+    R       ++  +   L   +   +      T        ++   
Sbjct: 472 SEIDKITNCLQETGFRWGINSLERDGEETHTLNWCLERWLVGMVIPTIPGLVLGGIAPFS 531

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
           K ++   +  + +    L            + S   W  +      ++C ++ +   +  
Sbjct: 532 KGIS---ISELSKWWEILSKICNMLQGLRQSHSCMKWGLVLKGLCDDLCNNDRKW--SWE 586

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            +   + +              +       +I+  LI  E  +    ++  + I      
Sbjct: 587 RQRFLRAIDDWI--RAADCFKKEIKIEVVAEIVKDLIAKEAGRFGH-RTGRITISALEPM 643

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           R +    ++L GL+E ++P+   +  F     +  L                E    TR 
Sbjct: 644 RAIPHKMIVLMGLDETIFPRKQQRPGFSLLDHKHFLGDPRINDKDRYV--LLEALISTRE 701

Query: 697 -LIYTRSLRENNIP--TIASRWLQRLLVLGGTDFFD 729
            L+ T   R+         S  +Q+       +  +
Sbjct: 702 TLLITWDGRDEKTGDSLEPSSPVQQFFEYLQHELGE 737


>gi|225181788|ref|ZP_03735226.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
 gi|225167562|gb|EEG76375.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
          Length = 694

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 76/689 (11%), Positives = 194/689 (28%), Gaps = 113/689 (16%)

Query: 53  TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
           T R    ++          +    +  +  +   E+    +       P +         
Sbjct: 16  THRIAHLIQQRLA------APWEILALTFTNKAAEELRGRIEELVGTAPGIWASTFHAAS 69

Query: 113 ARLILIWRNKLP--DIIKDLYPESPLSLPISPANAIWLAKNLA-------DIIDIIETEE 163
           AR++    ++L              L++  +    + L  +           I   + E 
Sbjct: 70  ARILREHADRLGYTSSFVIYDSADQLTVIKNVMKNLNLDDDTRFKPRGVLSAISRAKNEM 129

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              +      +  Y          +    + + ERL   NA       + +++   EH  
Sbjct: 130 MDVDTYDEAADNFYS-------RTVAKVFRSYQERLRLNNALDFDDMLLLVVKLLREHPE 182

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I++     +      ++  +        V+   D       +     ++
Sbjct: 183 VLKAYQEKFRYILVDEYQDTNRVQYEIVRLLGGVHRNLCVV--GDDDQSIYQFRGADIRN 240

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                        P+  + KL +        ++   +V     GR               
Sbjct: 241 ILDFE-----RDWPEAEVVKLEENYRSSGNILEAAWHVVKHNAGRK-------------- 281

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
                  + K+   Q+    + +  A +E++EA  IA  +R  L     + A++      
Sbjct: 282 -------DKKLWTSQEAGDPIQVYTAQDEQQEARYIAGEIRK-LSATYDQFAVLYRTNAQ 333

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L R  I+  +  G+          + + L  +    D +++  ++  P     
Sbjct: 334 SRAIEDALIRENISYQMVGGVRFWERKEVKDILAYLRVLDNPADGISLLRVINVPR---- 389

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                 + +   L  +A       Y+ + L        A  K                 +
Sbjct: 390 --RGIGATSVEKLNNMASERGITFYEALRLADEAGLGSAPLKK---------------VK 432

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
               L++++ Q    L   +  +     +  + +         +     + R+   L F 
Sbjct: 433 SFAALLENLQQMREYLSVDELTEQVMIKSGYLDEL------RAEGTDQAQSREENLLEFL 486

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
              +           T    + + +  +D +             +    + ++    ++ 
Sbjct: 487 TVAQDFVKESEDKSLTAFLTQLSLVSDLDTLED-----------DGGPRVVLMTMHAAKG 535

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHL 697
           L F  + + G+ EG++P   + +              TA+    +    +       + L
Sbjct: 536 LEFPVVFVAGMEEGIFPHMRSFD--------------TADGIEEERRLCYVGITRAEKRL 581

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVL 722
             T ++  N     +  + SR+L+ L   
Sbjct: 582 YLTSAMNRNLFGRRMHNMPSRFLRELPDA 610


>gi|291440630|ref|ZP_06580020.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291343525|gb|EFE70481.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 282

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 80/265 (30%), Gaps = 32/265 (12%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
            + S S     +  P     R I +L          +   RGTL H+++  L      + T
Sbjct: 5    SLSPSRASDFMQCPLLYRFRVIDRLPEK-----PSEAATRGTLVHSVLERLFDAPAAERT 59

Query: 829  PEINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
                  +         +          ++        W     ++   +   E    S +
Sbjct: 60   APRAKALVPGQWERLRESRPEVAELFADDPEGERLARWLAEAERLVERWFTLE--DPSRL 117

Query: 879  EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
            E     +  +  ++S G+ L G  DR+D+  +G V I DYKTG  P+     +    Q+ 
Sbjct: 118  EPAERELFVEAELDS-GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP-EYAEGALFQMK 175

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
              A  +       +       L  + L     +                E+  + L+ + 
Sbjct: 176  FYALVVWR-----LKKVVPRRLQLVYLGSGDVLTYDPVPAD-------LERVERKLLALW 223

Query: 999  TLLQNGEQPFISHLRLSEKSNIQSE 1023
              ++          R S+      +
Sbjct: 224  DAIRTATGTGDWRPRPSK-LCGWCD 247


>gi|33865448|ref|NP_897007.1| exodeoxyribonuclease V, gamma subunit RecC [Synechococcus sp. WH
           8102]
 gi|33632617|emb|CAE07429.1| probable exodeoxyribonuclease V, gamma subunit RecC [Synechococcus
           sp. WH 8102]
          Length = 1073

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 98/872 (11%), Positives = 226/872 (25%), Gaps = 67/872 (7%)

Query: 19  REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78
            E +  LL   L+E        P    +V + V T    + L  +     G  S +    
Sbjct: 10  AEFLATLLARQLLEER------PDPFETVEVLVNTWPTSRWLGEQLATANGISSLV--RF 61

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
              G  + +     L L      P      +  +   +     +       L+ +     
Sbjct: 62  PFPGSRLRQLVRRVLDLPDQEQDPWRATSLVWAVLEQMPALLEQPVARPLQLWLQQRDGG 121

Query: 139 PIS--PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
             S    +   LA+ +AD  D         E LH+    +         D+    ++   
Sbjct: 122 DASGLSRDRWQLARAIADAFDDYALYR--PETLHSWIQSQGSRAASAETDWQPWLARQLA 179

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             L        V   +  +R+ A          I + G +   P    L+  ++   +  
Sbjct: 180 ASLHRQPFGLQVQSAVERLRSGAVDPQVLP-KVIRLFGISALAPVQVELIQALSGSTDVQ 238

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
           + L      +     N   +     T             L  +L  +  + + +      
Sbjct: 239 VYLLTPCRDLWQRCGNRREQLGATWTEPPDGGWLQQAPRLEAMLGRMGAEFQQLLEGSGD 298

Query: 317 SNEMYGRSMVISKSFLPPDTSDMR-----------NTDILENKIPNIQKCFSDVALIEAD 365
           S     R   +    +     + R             +    +  +       +    A 
Sbjct: 299 SQLGEVREGDLFADPVRIAEGEGRSATLLEQLQQQLVEPGCRESLDRDLDDRSLLFQAAP 358

Query: 366 NEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
               E   +   +   L    +   +   ++T   +    +   +      I +     L
Sbjct: 359 GPWREVQLVRDQVLQWLAADPELEPRDVLVMTPQIDRYAPLLSSVLNDRDAIGVDLPWRL 418

Query: 422 STTL------HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG--FPEKYLSRAKNALEL 473
           +          + ++  LL+          +  L+ +P  +          S     L+ 
Sbjct: 419 TDRSQQSTPGLTMVMLELLDLASGRLTATGLERLLANPALQTQQGLSGTEASALTRCLQR 478

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCI 531
              R   ++ +    ++  L     +         +  L+          +D   +++  
Sbjct: 479 TGFRWGLDARERGGDETHSLSWCLDRWLLGLALPQRDGLAPGGAAPFHQDLDPQRLVRWW 538

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
           + L              + + W +L    L+++  D        W  +      + + + 
Sbjct: 539 SVLDRLVRWLQQLRRPRTSTAWVELLQAVLEDLFADGGAWS---WERQGWSAALAEWQQR 595

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
             + S     A+    +   L           +S  L +      R +    ++L GL++
Sbjct: 596 AASCSLELEVAVAAEVLAEALSVDS--GRFGHRSGALTVSALEPMRAIPHKVIVLMGLDD 653

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
           GV+P+   +  F     +  L                 + +  RHL+ +   R  +    
Sbjct: 654 GVFPRVDQRPGFHLLEQRRWLGDPRGGDQDRYV-LLEALMSARRHLLISWCGRNEHT--- 709

Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
                         +         Q   D TR+L           P P P   +  +   
Sbjct: 710 -------------GEPRPAAAPVEQWLQDLTRQLGTEASAGLCIEPDPNPLDRSNFQ--- 753

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            +   Q ++      A R     ++   +            H    +       ++  E+
Sbjct: 754 VAGHGQPLSCDRRQLAAR----RWLDQHQSHAATAGLAWPLHWSAPDPEVTIDPRSDEEL 809

Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
              +     +   +  L P   +        +
Sbjct: 810 LQWLVDPQSAWLRQLGLHPAERVDPVEDLEAL 841



 Score = 38.7 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 48/567 (8%), Positives = 141/567 (24%), Gaps = 45/567 (7%)

Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
           + L  ++     A  +A  L     +  +   ++      +R +  +L        +   
Sbjct: 2   LTLYRSNRAEFLATLLARQLLEERPDPFETVEVLVNTWPTSRWLGEQLATANGISSLV-R 60

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIA-----------TLVKHP------LAKFGFPE 461
            P   +    ++  +L+   +  D                 L++ P      L       
Sbjct: 61  FPFPGSRLRQLVRRVLDLPDQEQDPWRATSLVWAVLEQMPALLEQPVARPLQLWLQQRDG 120

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
              S        +A        D    +   L      + +              ++LA 
Sbjct: 121 GDASGLSRDRWQLARAIADAFDDYALYRPETLHSWIQSQGSRAASAETDWQPWLARQLAA 180

Query: 522 LLVDH-----ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            L        +   +  L +   +       + +   + L    ++ +          ++
Sbjct: 181 SLHRQPFGLQVQSAVERLRSGAVDPQVLPKVIRLFGISALAPVQVELIQALSGSTDVQVY 240

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL-------F 629
                + L        E          +   +         +     +   L        
Sbjct: 241 LLTPCRDLWQRCGNRREQLGATWTEPPDGGWLQQAPRLEAMLGRMGAEFQQLLEGSGDSQ 300

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD-- 687
           +    E  L      I  G           +   +    +  L+    ++ +   A    
Sbjct: 301 LGEVREGDLFADPVRIAEGEGRSATLLEQLQQQLVEPGCRESLDRDLDDRSLLFQAAPGP 360

Query: 688 FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL-D 746
           +      R  +      +  +       +   +          L  R    +D   +L D
Sbjct: 361 WREVQLVRDQVLQWLAADPELEPRDVLVMTPQIDRYAPLLSSVLNDRDAIGVDLPWRLTD 420

Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF--------IPH 798
            + +            L+      + + +++L+ +P     + +   +            
Sbjct: 421 RSQQSTPGLTMVMLELLDLASGRLTATGLERLLANPALQTQQGLSGTEASALTRCLQRTG 480

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
           F+   D  +RG    + ++  + + +          +     + F  ++L P   + W  
Sbjct: 481 FRWGLDARERGGDETHSLSWCLDRWLLGLALPQRDGLAPGGAAPF-HQDLDPQRLVRWWS 539

Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNI 885
           +  ++       ++  +      +V +
Sbjct: 540 VLDRLVRWL---QQLRRPRTSTAWVEL 563


>gi|312138580|ref|YP_004005916.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311887919|emb|CBH47231.1| UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
          Length = 824

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 82/717 (11%), Positives = 194/717 (27%), Gaps = 86/717 (11%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +        + P     +     T +A  E+R    ++ G ++  +  + +  
Sbjct: 60  TAVLTRRIAYLLAERGVMP---GQILAITFTNKAAAEMRERVAQLVGPRANSM-WVSTFH 115

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                   A   L + LN   S                  + D        + +S  +  
Sbjct: 116 SSCVRILRAQAGLLHGLNSNFS------------------IYDADDSRRLLTMISKDLEI 157

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
               + A+ LA  I  ++ E    E+  A  +             +     ++ +RL   
Sbjct: 158 DTKRYSARLLATKISNLKNELIDPEEAAADADRDSND----LDKLVARVYAHYQQRLRAA 213

Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHP---- 253
           NA          +     +       +     +++     +  A   L+  +        
Sbjct: 214 NALDFDDLIGETVGLLQANPQVAEYYRRRFRHVLVDEYQDTNHAQYVLVRELVGEESDDP 273

Query: 254 ---NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                  +    D       +   T ++            +P      L       +  +
Sbjct: 274 YAVPPGELCVVGDADQSIYAFRGATIRNIEEFE-----RDYPDARTILLEQNYRSTQNIL 328

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
               +V +   GR                      E ++         +    ADNE +E
Sbjct: 329 SAANSVISRNTGRR---------------------EKRLWTDSGEGELITGYVADNEHDE 367

Query: 371 AISIA---IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
           A  +A     L  + +    + A+     N +R ++    R GI   +  G         
Sbjct: 368 AQFVASEIDRLVDAGETKFGEVAVFYRTNNSSRALEEIFIRLGIPYKVVGGTRFYERKEV 427

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             + + L  +   +D +++  ++  P    G   +         + V       +     
Sbjct: 428 RDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVSVYAEQKGVGFAEALRAAGEGS 487

Query: 488 ---LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              L +     I +              ++ D      + + +   +      +  + S+
Sbjct: 488 VPLLNTRSQKAITSFLELLDGLRALMVSTDADGNDLTDIGEVVEGVLDRTGYRRELEASS 547

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                            + V +               +  ++    + + G     +   
Sbjct: 548 D-----PQDGARLDNLNELVSVAREFSSDARNAAAFAEENAAEGDVVEDEGQPDPGSLAA 602

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
           +++ ++ + D + V    E    + ++    ++ L F  + + G  +G +P   A     
Sbjct: 603 FLERVSLVADSDQV--PDEGEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPA 660

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
               +  L    A   I +A H   +          RS     +    SR+LQ +  
Sbjct: 661 ELSEERRL----AYVGITRARHRLYLTRA-----IVRSAWGQPVTNPESRFLQEIPA 708


>gi|296121490|ref|YP_003629268.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
 gi|296013830|gb|ADG67069.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
          Length = 680

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 81/710 (11%), Positives = 182/710 (25%), Gaps = 117/710 (16%)

Query: 36  YDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL 95
              ++P     +     T +A +E+      + G+     P I +           ++  
Sbjct: 45  AAGVDPE---RILSVTFTNKAAREMLDRTSLLLGRTMKKRPTISTFHSWCVGILRQEIDS 101

Query: 96  SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155
                       +   +               ++      L +      A+     LA  
Sbjct: 102 LGYP--------KQFVIYD----------RGDQESAARKALQVLKMTDTALKPGDLLAQ- 142

Query: 156 IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
           I   + +    +    + +  +            +A + +   L                
Sbjct: 143 ISRWKMQGVMPDLAQEIADSDH-------EQLAGMAYRRYQLALKAAGGVDFDDLLFLTF 195

Query: 216 RA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
           +      EA    +     + I     +     RL+ ++        V+   D       
Sbjct: 196 QLFKHHPEALERQQNRFDFVQIDEYQDTNELQFRLIESIVRRHQNLCVV--GDDDQSIYG 253

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
           W     K       +      P   + +L D        ++    +     GR      +
Sbjct: 254 WRGAEVKHILGFKQSF-----PAAKVVRLEDNYRCTESIIQLANQLVAHNRGRHEKRLIA 308

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKK 387
                                     + V   E  +E+ EA  +   +      L+    
Sbjct: 309 HR----------------------GGTSVVFREYPDEQAEAEGVVRDIAYLIHQLNVRPC 346

Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
           + A++       R  + EL R  I+  I  G           L + L  +    D +++ 
Sbjct: 347 EIAILFRTNEQPRIFEHELRRKQIHYRIVGGQSFFDRKEIKDLQAYLKVLVNPRDDLSLL 406

Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            ++  P    G        A                           R   +K       
Sbjct: 407 RIINVPPRGIGDATCERLLA---------------------------RAVKEKRRFWDVI 439

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK--NSTCGNLSISDWTKLTVTCLQNVC 565
             +  + E    A+  +    + ++ L           +   L + + T       +   
Sbjct: 440 PDAAAAGEITSKALNNLRQFEKQMSGLREAFKQPGVKLSETFLRMVETTGYAREIERTYK 499

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
             E +++ NL   E    +S   ++          +   ++D I+ L   +   P+    
Sbjct: 500 SAEQQEMRNLILGEFANAVSQYEAQSRS------PSLEGYLDEIS-LGGSDFAAPERPDE 552

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
           + + ++    ++ L F+ + L GL EG+ P   + +             +       +  
Sbjct: 553 NAITLMTLHSAKGLEFERVYLVGLEEGILPHKRSVDEEF----------ENPSSVEEERR 602

Query: 686 HDFEMANGTRH-LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDN 730
             +      +  L  TRS           T  SR+L+ +     T     
Sbjct: 603 LCYVGITRAKDFLTITRSQSRVKWGKKRETKPSRFLKEMRTAIETTAAPE 652


>gi|197287153|ref|YP_002153025.1| DNA-dependent helicase II [Proteus mirabilis HI4320]
 gi|194684640|emb|CAR46555.1| DNA helicase II [Proteus mirabilis HI4320]
          Length = 718

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/686 (9%), Positives = 157/686 (22%), Gaps = 123/686 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--VSN 105
              T +A  E+R    ++ G          I +   +      A  L +        + +
Sbjct: 60  VTFTNKAAAEMRHRIEDLIGTSQGGMW---IGTFHSLAHRLLRAHYLDAGLPQDFQIIDS 116

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +   + R++                                           + E  +
Sbjct: 117 DDQYRLIRRIVKSMALDDKQWPPRQGMWYINGK---------------------KDEGLR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +    N     W            + + E              +             
Sbjct: 156 PQHIQTYGNPVETTWLK--------VYQAYQEACDRAGLVDFAELLLRAHELWLNKPQIL 207

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A      +++   D       W     ++  
Sbjct: 208 EHYQHRFTNILVDEFQDTNRIQYAWIRMLAGQTGKVMIV--GDDDQSIYGWRGAQVENIQ 265

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
              +                             G  +  +       S      +     
Sbjct: 266 NFLNEFP--------------------------GAETIRLEQNYRSTSNILKAANALIAN 299

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398
           N+D L   +         ++L  A N+ +EA  +   ++   +E       A++      
Sbjct: 300 NSDRLGKNLWTEGAEGEPISLYCAFNDLDEARYVVGRIKRWHEEGGALADCAILYRSNAQ 359

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L +      I  G             S +      +D  +   +V  P    G
Sbjct: 360 SRIMEEALLQANKPYRIYGGQRFFERQEIKDALSYMRLTANRHDDASFERVVNTPTRGIG 419

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                + R                                 ++N       +    E K 
Sbjct: 420 DRTLDVVRQV------------------------------ARDNQITLWESALQVIEHKM 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           LA   +  I + +  + T          ++      + +            +    +   
Sbjct: 450 LAGRAIAAIARFLELIETLANETADMPLHVQTDRIIRDSGLKAMYEQEKGEKAQARIENL 509

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           EE  T +  FS   E    +   A      ++                 + ++    ++ 
Sbjct: 510 EELVTATRQFSYQDEDEDLMPLQA-----FLSHAALESGEGQADAYQDAVQLMTLHSAKG 564

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F  + + G+ E           F S++   +      E+ +        M    + L 
Sbjct: 565 LEFSQVFIVGVEE---------GMFPSQMSLDEGGRLEEERRLAYVGVTRAM----KKLT 611

Query: 699 YTRSLREN----NIPTIASRWLQRLL 720
            T +         +    SR++  L 
Sbjct: 612 LTYAENRRLYGKEVSHRPSRFIGELP 637


>gi|116510846|ref|YP_808062.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactococcus lactis
           subsp. cremoris SK11]
 gi|122940438|sp|Q033I2|ADDB_LACLS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|116106500|gb|ABJ71640.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 1099

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 76/239 (31%), Gaps = 24/239 (10%)

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            LD  + +D          P     +       S S  ++  N  Y  +    L L+   
Sbjct: 728 LLDLAKDIDTVN-----LAPDTLEQIYGDKIYASVSSFERFYNCEYQYFLENTLSLETFE 782

Query: 798 HFKKDPDRTDRGTLFHNIITELIKK--RINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
           +     +    G  FH +  +++K+     +N  E   L  Q +D ++ +          
Sbjct: 783 NID--INSKIVGNFFHEVFEKVMKETDLSAENFDEKLTLFLQEVDKNYSRYFTQDATARF 840

Query: 856 WRHLFHKISHSFLEHEEKIQS--SIEKIFVNIPAKMA------IESIGIHLTGFADRIDL 907
                 +I        +   S   ++ +       ++           I+L G  DR+D 
Sbjct: 841 TWSNLEEIVRQTATVLKATVSTDELKTLLTESSFGLSKSELGNFSVDDIYLRGRIDRLDQ 900

Query: 908 LKSGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
           L + ++ + DYK+      +   A   +  Q       +K         +K+    Y++
Sbjct: 901 LSTDYLGVIDYKS-SAHSFKLQEAYDGLSLQFMTYLDVIKQ----AFPNQKIWGALYLQ 954


>gi|15618681|ref|NP_224967.1| DNA helicase [Chlamydophila pneumoniae CWL029]
 gi|15836305|ref|NP_300829.1| DNA helicase [Chlamydophila pneumoniae J138]
 gi|16752269|ref|NP_445637.1| ATP-dependent helicase PcrA [Chlamydophila pneumoniae AR39]
 gi|4377080|gb|AAD18910.1| DNA Helicase [Chlamydophila pneumoniae CWL029]
 gi|7190013|gb|AAF38869.1| ATP-dependent helicase PcrA [Chlamydophila pneumoniae AR39]
 gi|8979145|dbj|BAA98980.1| DNA helicase [Chlamydophila pneumoniae J138]
          Length = 639

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 85/691 (12%), Positives = 173/691 (25%), Gaps = 127/691 (18%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTI-LPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            +     T +A +EL+   +      +   +P++ +   +                    
Sbjct: 52  EILAVTFTNKAARELKERIVNQCASTNEFDVPMVCTFHSLG------------------- 92

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETE 162
               +  L R I +   +    I D      L       + +   LA  +   +   +  
Sbjct: 93  ----VFILRRSINLLNRENNFTIYDQSDAEKLIKHALQQHNLKPNLASKIQAHVSQAKNR 148

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE---- 218
               EDL       Y    +          + + ++L+E NA          +R      
Sbjct: 149 LLFPEDL---DPNDYIDPVVS-------IYQEYQKKLIEANALDFDDLLFLTVRLLRESP 198

Query: 219 -AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
            A+ L       ++I     +  A   LM  ++       V    D       W      
Sbjct: 199 EAQELYNQLWKALLIDEYQDTNHAQYTLMQLLSKQHRN--VFAVGDPDQSIYSWRGANIH 256

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +     ++        Y  AK+L                   +              +  
Sbjct: 257 NILNFEND--------YPNAKVL------------------CLEENYRSYGNILNAANAL 290

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
              N   LE ++ +++     + L     +REEA  +A  +           +   +   
Sbjct: 291 IKNNASRLEKELRSVKGPGEKIRLFLGSTDREEADFVAAEILQLHRVGNIKLRDICIFYR 350

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
             + +R  +  L R  I  +I  G+          + + L      +D +A    V  P 
Sbjct: 351 TNSQSRTFEDALLRRRIPYEIIGGLSFYKRKEIQDILAFLRIFISKSDIVAFDRTVNLPK 410

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G    +                        +   +    A Q+         S+  +
Sbjct: 411 RGIGSTTIFAL------------------TQYAIAQGLPILKACQQALDTKDVKLSKKQQ 452

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           E  +  + L   I      L      ++       +    +   T        E      
Sbjct: 453 EGLQEYLALFPQIEHAYNTLSLRDFIESVVRITGYLEILKEDADTFKDRKSNLEELYHKA 512

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           L  E++                            +  L    +       +  + ++   
Sbjct: 513 LESEQQ-------------------NPKTHLELFLDDLALKGSDDDLNLTADRVNLMTLH 553

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
             + L F    L GL E + P   +                T E    +    +      
Sbjct: 554 NGKGLEFRVSFLVGLEEQLLPHANSLGG-------------TYENIEEERRLCYVGITRA 600

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLL 720
           + L+Y      RSL         SR+L+ + 
Sbjct: 601 QDLLYLTAAQVRSLWGTVRMMKPSRFLKEIP 631


>gi|154245373|ref|YP_001416331.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154159458|gb|ABS66674.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 817

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 81/692 (11%), Positives = 176/692 (25%), Gaps = 126/692 (18%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + + +   T +A +E++     + G +   +P + +   +                  V 
Sbjct: 88  SQILVVTFTNKAAREMKDRIHAMVGDQIEGMPWLGTFHSIG-----------------VR 130

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    L  +  L    +     W A+ LA  ID  +    
Sbjct: 131 ILRRHHELVGLKSGFTILDTDDQIRLLKQ--LLAAENIDEKRWPARLLASTIDSWKNRGL 188

Query: 165 KWEDL---HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
             +D+                            +  RL  LNA       +  +R   E+
Sbjct: 189 SPKDVPPGEGAVFANGRG---------GTLYAAYQARLKALNAVDFGDLLLEGIRLFREN 239

Query: 222 LMKG-----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                        +++     +  A    +  +A        +   D       W     
Sbjct: 240 PDVLAEYHKRFKYLLVDEYQDTNVAQYLWLRLLAQGSKNVCCV--GDDDQSIYGWRGAEV 297

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            +     S+                            G     +                
Sbjct: 298 DNILRFESDFP--------------------------GAKVIRLERNYRSTGHILASAAH 331

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITA 394
               N   L   + +  +    V +  A +  EEA ++   +        K  + A++  
Sbjct: 332 LIAHNEGRLGKTLFSEGEDGEQVTVTGAWDSGEEARAVGEEIEALQRAGHKLSEIAILVR 391

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                R  +      G+   +  G             + L  +    D +A   +V  P 
Sbjct: 392 ASFQMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLRCVNSSADDLAFERIVNVPK 451

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G                               + V       +         +R+  
Sbjct: 452 RGIG------------------------------DATVKQIHDVARAVGLPLQEATRVLT 481

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           E +EL   +   +   +     ++                             +      
Sbjct: 482 ESEELKPKVRATLRGVVEAFGRWREQARVLSHTELAEIVL-------------DESGYTE 528

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
           +W ++     +     + E    ++   N   +++ I+ ++D +           + I+ 
Sbjct: 529 MWQKDRSAEAAGRLENLKELVRSMEPFENLSGFLEHISLVMDTDN----GAGEDAVQIMT 584

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L FDT+ L G  EG++P   A +         +      E+    A      A 
Sbjct: 585 LHSAKGLEFDTVFLPGWEEGLFPHQRALD---------EQGKAGLEEERRLAYVGITRAR 635

Query: 693 GTRHLIYTRSLRENN--IPTIASRWLQRLLVL 722
            +  +    + R +     T+ SR+L  L   
Sbjct: 636 ASARIFVASNRRIHGMWNSTVPSRFLDELPDA 667


>gi|114564558|ref|YP_752072.1| DNA-dependent helicase II [Shewanella frigidimarina NCIMB 400]
 gi|114335851|gb|ABI73233.1| ATP-dependent DNA helicase UvrD [Shewanella frigidimarina NCIMB
           400]
          Length = 727

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 78/705 (11%), Positives = 175/705 (24%), Gaps = 125/705 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           S+     T +A  E+R    ++ G     +  I +   +           + NL      
Sbjct: 56  SILAVTFTNKAAAEMRERVEKVVGTNMGRM-WIGTFHGLAHRLLRTHYQDA-NLPQSFQI 113

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           + +  +L  L R++                                           + +
Sbjct: 114 IDSDDQLRLLKRILKSLNLDEKQYPPRQAQGYINGK---------------------KDQ 152

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
             + + +           + +  + L I  K + E                L+RA    L
Sbjct: 153 GLRPKHI-------DAGGFPIEQNLLNI-YKVYQESCDRAGLVDFAEI---LLRAHELWL 201

Query: 223 MKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
            K             I++     +       +  +A   N A V+   D       W   
Sbjct: 202 NKPHLLAHYQERFRHILVDEFQDTNAIQYAWIRVLAG--NTANVMIVGDDDQSIYGWRGA 259

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             ++ +    + +                          G  +  +       +      
Sbjct: 260 QIENLHRFLKDFS--------------------------GATTIRLEQNYRSTANILNAS 293

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALI 392
           +     N D L  ++    K    +++  A NE +EA  I   +    ++     + A++
Sbjct: 294 NAVIANNPDRLGKELWTEDKDGEPISVYCAFNEMDEAKFIVGRISDWHEKGGSLSECAIL 353

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R ++      G+   I  G+              +  I   ND  A   +V  
Sbjct: 354 YRSNAQSRVLEEAFLHKGLAYRIYGGLRFFERQEIKDAMGYMRLINNQNDDAAFERVVNT 413

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P    G     + R+                                             
Sbjct: 414 PARGIGDRTLDIIRSTARQH------------------------------ELTLWQACVS 443

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
             E+K LA    + I   +  ++  +T+           D    +            +  
Sbjct: 444 LIEEKVLAGRAANAINGFMELIIAMRTDTADMLLYRMADDVIDRSGLRTMYEAEKGEKAQ 503

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
             +    E  T +  F    E     + NA      ++              +  + ++ 
Sbjct: 504 ARIENLNELVTAARSFEMPEELEDMGELNA-----FLSHAALEAGEGQADAFTDAVQLMT 558

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L F  + + G+ EG++P              S + L   ++   +    +    
Sbjct: 559 LHSAKGLEFPMVFMAGVEEGLFP--------------SKMALDEGDRLDEERRLCYVGMT 604

Query: 693 GT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
              + L  + +               R +      F + ++ R Q
Sbjct: 605 RAMQKLYISYAESRRIYGREDYASPSRFINEIPEKFVEQIRIRAQ 649


>gi|312278340|gb|ADQ62997.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus ND03]
          Length = 770

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 82/690 (11%), Positives = 192/690 (27%), Gaps = 120/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R     +    +T   +I +   +       +       N     
Sbjct: 54  NILAITFTNKAAREMRER--AVALNPATSETLIATFHSMCVRILRRE-ADHIGYNRNFTI 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++             L P+       +    I  AKN  D++D I  E
Sbjct: 111 VDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLLDEIAYE 157

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            +  +    +                    K + E L    A       +  +R   ++ 
Sbjct: 158 HQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNP 202

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  +  L +     ++ ++    V      R              
Sbjct: 261 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANEVIKNNRNRRPK----------- 304

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITA 394
                     K+         +    A++ER+EA+ +A  +   + E   N K  A++  
Sbjct: 305 ----------KLWTQNDEGEQIVYYRANDERDEAVFVASTIDNIVREKVKNFKDFAVLYR 354

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + S LN I   +D ++   +V  P 
Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANTSDNISFERVVNEPK 414

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G       R     + ++                +L   A    +            
Sbjct: 415 RGVGPGTLEKLRNFAYEQNMS----------------LLYASANIMLSPIKGKA------ 452

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                       +      ++  +   +      ++      +                 
Sbjct: 453 ---------AQGVYDFANMILNLRDQLDGLSITDTVEAILDKSGYLDALSMQQTLESQSR 503

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  +++  F +    G+  +         +  L           +++ + ++   
Sbjct: 504 IENIEEFMSVTKNFDETNTDGTEDETGIDRLGRFLNDLALIADTDDGEAEAAEVTLMTLH 563

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P + A         +  L               +      
Sbjct: 564 AAKGLEFPVVFLIGMEEGVFPLSRASEEPDELEEERRLA--------------YVGITRA 609

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRL 719
             +++     TR+L         SR+L+ +
Sbjct: 610 EEILFLTNANTRTLFGKTGYNRPSRFLREI 639


>gi|284031137|ref|YP_003381068.1| RecB family exonuclease-like protein [Kribbella flavida DSM 17836]
 gi|283810430|gb|ADB32269.1| RecB family exonuclease-like protein [Kribbella flavida DSM 17836]
          Length = 295

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 81/251 (32%), Gaps = 20/251 (7%)

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                         S S     ++ P     R + +L              RGT+ H ++
Sbjct: 4   AAAVDVPAHPRAALSPSRAADFMSCPLKYRFRVVDRLPEK-----PSAAAVRGTVVHAVL 58

Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE---- 872
             L      + T E   LM +        +               +++    E  +    
Sbjct: 59  ERLYDLPRGQRTLEQAALMLEPQWQRVLADEPEVAQLFEDDAEGTELAKWLAEAHQLLGK 118

Query: 873 ----KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928
               +  +++E     +  +  +ES G+ L G+ DR+D+  +G + + DYKTG +P +  
Sbjct: 119 YFTLEDPNALEPAERELYVETELES-GLTLRGYVDRLDVAPTGEIRVVDYKTGRSPSEFF 177

Query: 929 AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
             K +  Q+   A  L       +     + L  + L     +  + ++    + +    
Sbjct: 178 EAKAL-FQMKFYALVLWR-----LRGVVPSMLQLVYLGNGEIVRYVPDEADLRACERKVG 231

Query: 989 KSLKNLIEIVT 999
              + +   + 
Sbjct: 232 ALWEAITRALE 242


>gi|256832430|ref|YP_003161157.1| RecB family exonuclease-like protein [Jonesia denitrificans DSM
            20603]
 gi|256685961|gb|ACV08854.1| RecB family exonuclease-like protein [Jonesia denitrificans DSM
            20603]
          Length = 298

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 70/265 (26%), Gaps = 27/265 (10%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S        P     R I +L              RGT+ H+++  L     ++  
Sbjct: 13   ALSPSRALDFRQCPLLFRLRTIDRLPERESV-----AAVRGTVVHSVLERLFDVAPDERD 67

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI---SHSFLE--HEEKIQSSIEKIFV 883
                  +   +      E+ P             +   + + +    E +    +     
Sbjct: 68   VGFATSLVDGVVQEL-VESRPAVKAEFDVATIEGVVTDARALVARYFELENPQMLHPAAR 126

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
             +     +    +   G  DR+D+   G + + DYK+G  P           Q+   A  
Sbjct: 127  EVTLSSYVGRRSVT--GVVDRVDVAPDGAIRLVDYKSGRAP-APQYSGNAAFQMRFYALL 183

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
            +       +  R  A L  + L     ++    +      +    +    +   +     
Sbjct: 184  VAR-----VKGRLPAMLRLVYLGDGKIMESAPTNGDVSWVEASIARVWDGIERAID---- 234

Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLA 1028
                F+       K      +  + 
Sbjct: 235  -TDGFVPRRS---KLCGWCSFQQVC 255


>gi|87309169|ref|ZP_01091306.1| probable helicase [Blastopirellula marina DSM 3645]
 gi|87288160|gb|EAQ80057.1| probable helicase [Blastopirellula marina DSM 3645]
          Length = 1040

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 95/901 (10%), Positives = 217/901 (24%), Gaps = 93/901 (10%)

Query: 85   VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +   A  + +       + + + +  AR   + R    D    L       +     +
Sbjct: 198  ARKPPQAQEIDAAKKLLLEAPLDKRMTKARNEDLARFDEGDFGGFLEKGLAKKVIDDDLS 257

Query: 145  AIWLAKNLADIIDIIETEEKKWEDLH--ALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                   +   +                 L   +    + L   F     +    +    
Sbjct: 258  YYR--AEIPADVARAYQTLISAAACEPYNLLVRQTEGAFQLLDRF-DAIYRRLKFQSQSY 314

Query: 203  NASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI- 257
                   +      A+      + + G    +++     + PA   ++  VA        
Sbjct: 315  RFDDVTRFLSRQADADTPTRVAYRLDGHINHLLLDEFQDTSPAQWSVLRPVARRVTTQPL 374

Query: 258  --VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
                   D       W     +      +        +  LA       +  + V  +  
Sbjct: 375  GSFFCVGDVKQAIYGWRGGVAEIFEEVVAELGELD--EAELAVSFRSSPVVIDFVNLVAR 432

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
              +                      +T           +        E  +  +E + +A
Sbjct: 433  NLHRHPSLDRFEDGVKRWQTMFADHSTAKTSLPGYVSVETA---RYGEEGDPTDEMLFVA 489

Query: 376  IA---LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
             A    R   D    +  ++       R++  EL + G+      G  L+ +    ++ S
Sbjct: 490  AAERVCRSLEDSPGSEVGVLVRTNAAVRKMIFELRQRGVTASEEGGGTLTDSASVQLMMS 549

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            LL  I    D +A   +   PLA       +++                     +L   +
Sbjct: 550  LLQWIDHPADTVARFHVQNSPLAATIGLTPHMAAR----------------KSSELAQAL 593

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
             + +        +  W   L E         V+ +++     + +     +T       +
Sbjct: 594  RNELLVFGYGAMLRRWSQVLVEIGNSRERRRVEQLVR-----MAHAYQPKATLRTSDFVE 648

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
            + +                             S++    I     ++ + +  +D+    
Sbjct: 649  FVET--------------------QRVADPQASAVRVMTIHQAKGLQFDVVVLLDL---- 684

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                    +    S  F++            +     +         +  F +   Q  +
Sbjct: 685  ------DHEFPGRSPNFVIERAAPLSPVTSIVRYANKDVQKVLPPRLQQMFTNASSQQAV 738

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                  + +         A    H++                 L    +        N  
Sbjct: 739  ------EELCVLYVAITRAVHAMHVMIKPPSAREKKTPRTMAGLVTEALEVKRQPQGNDV 792

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                   +W   L        ++ P     L            + L   P  +     LK
Sbjct: 793  VFAMGDAEWFAHLAAADAPRLHRTPVVARRLPIAMAAAKSQRGETLA--PSKLEGGPRLK 850

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITEL-IKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
            +  + H          G++ H  +  +        +      + + I+      ++L   
Sbjct: 851  VANLLHTTDS-TGRLFGSVTHAWLERIEWLNDFELDETRFRTIARAIVGDALNVDHLLAR 909

Query: 852  ID-IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
                I +    ++         +  S+     V      AI   G    G  DR+ L K 
Sbjct: 910  FRKTIEQPQLRQLLDRQTAPRPQGVSAGATAEVRQEQTFAIAVEGGIQNGAIDRLVLWKE 969

Query: 911  G----FVDITDYKTGDNP-----KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
            G      D+ DYKT   P               PQ++    A++     ++  + V    
Sbjct: 970  GDEVVAADVIDYKTDRLPEDDAETLADRAAYYRPQVNAYRRAVQQ--MWRLPEKAVIGHL 1027

Query: 962  Y 962
            Y
Sbjct: 1028 Y 1028


>gi|264676500|ref|YP_003276406.1| exodeoxyribonuclease V, subunit gamma [Comamonas testosteroni
           CNB-2]
 gi|262207012|gb|ACY31110.1| exodeoxyribonuclease V, gamma subunit [Comamonas testosteroni
           CNB-2]
          Length = 1195

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 102/913 (11%), Positives = 240/913 (26%), Gaps = 84/913 (9%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L  T++      PL    L    + V +    +  +    E  G  +     +       
Sbjct: 31  LADTVLAWLAAHPL--QALEPEIVLVQSNGMAEWFKMRMAEQQGVCAAAQVEL----PAR 84

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
               +   +L  +  P  S + +   + RL+ +    L +      P +    P  P   
Sbjct: 85  FVWRSYRQILGRHEVPRESPLDKTPMIWRLMRLLPQCLGE--PAFAPIANFLRPGEPQRL 142

Query: 146 IWLAKNLADIIDIIETEEKK----WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + LA+ LAD+ D  +         WE    +          +    L    + W + L E
Sbjct: 143 LQLAEKLADLFDQYQIYRADWLAAWEKGEDVLRTAGRPDAPVPEGQL-WQPQLWRKVLAE 201

Query: 202 LNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
           L+       + AL+    + L             +++ G +    +  + +S +A H   
Sbjct: 202 LDEQERAATRPALLARILDALQSGQPPVTPLARRVVVFGMSQMPLSLMQFLSGIAQHSQV 261

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNT---------TYSTHPQYSLAKLLDFLDIK 306
            I +P           +                         +    ++   L  +    
Sbjct: 262 LIAVPNPCRFHWADAIDGRELLRQQRRRHADKGGKDLAQIPLAAMHAHAHPLLAAWGRQS 321

Query: 307 REDVKRLG-----------------NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
           R+ V++L                  +V +E     ++ +   +           + E+  
Sbjct: 322 RDYVRQLDAFDTTGDIAVQWGWPRVDVYDEADASELIDAPLLVQVQQRIRDLVPMSEHPA 381

Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---------KKKSALITADRNLAR 400
             I      +   +A     E   +   L   L E           ++  ++      A 
Sbjct: 382 VEIAAADQSIVFHKAHGLVRELEVLHDQLLQWLAEPAAAGRAVLAPREVVVMLPSIEEAA 441

Query: 401 RVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +           I  DI+     +++   + L  LL    +      +  L+  P
Sbjct: 442 PAIRAVFGQYGRHDARHIPFDIADVGARASSPLVTALQWLLKLPQQRCRLSELCDLLDVP 501

Query: 454 -------LAKFGFPEKYLSRAKNALELVALRGNKNSYD----------IMDLKSLVLDRI 496
                  LA    P+     A   +        +                 L+ ++L   
Sbjct: 502 AVAARVGLAADDLPQLTHWMAGAGIRWGLNHAQRAQLGLAACGDPNSAWFGLRRMLLGYA 561

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
           +           Q     E  +    L   +   +  L+        T    +  +    
Sbjct: 562 SGPALEAAFDEAQVFAGMEPYDEVGGLTAELAGSLASLLGRMLQWWQTAATAAAPEVWAQ 621

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L +                    L    +   + G           +   + +   
Sbjct: 622 RFRSLMDDFFVAQGDEDQALCAALDTALVGWQAACEQAGFEALIPLEVAQEAWLQALSEP 681

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK-NPFLSRVMQSDLNLK 675
            +  +  ++  +     +  R + F+ + L G+N+G +P+   + +  L  +        
Sbjct: 682 ALNQRF-RAGGVTFCTLMPMRAIPFEVVCLLGMNDGDYPRRATRVDFDLMALPGQQRPGD 740

Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKK 733
            A +   +      + +    L  + + R   +N     S  + +L        +     
Sbjct: 741 RARRDDDRQLMLDALLSARSKLYISWAGRHVRDNSEQPPSVLVSQLRDYL-RQGWQGEDS 799

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
            G    +    L     + H  +P      E      +F+      ++  A     ++  
Sbjct: 800 AGLSASERGELLLAQRTRQHPLQPFSRSYFEQASGLSTFAREWYGAHEERAAQVLPVVAA 859

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                            L H      ++ R+     +   L++       +       I 
Sbjct: 860 FEPDPEVPLTLARLTEFLRHPA-RSFLRNRLQVRFEQDEELLEDDELFSVDGLTAYGLIQ 918

Query: 854 IIWRHLFHKISHS 866
            + + +  +++H 
Sbjct: 919 QLQQGVRTQLAHD 931


>gi|156744107|ref|YP_001434236.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
 gi|156235435|gb|ABU60218.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
          Length = 1180

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 86/889 (9%), Positives = 206/889 (23%), Gaps = 79/889 (8%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILP---IIKSLGDVVEEKFTADLLLSYNL 99
              AS+     + RA +E+R   +     ++  L     I +                   
Sbjct: 241  DPASILALTFSNRAAEEMRERIVAALRHEAPRLVGRIEISTFHSWGLNVLRIYGARLGLP 300

Query: 100  NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL----------------SLPISPA 143
                    RLL+ A L ++   +L D+    + +                       SP 
Sbjct: 301  VDA-----RLLDTADLFILLSKRLNDLRLAYFKDVREPTRHLLTIIQAISRIKDELWSPD 355

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                LA   A  +      +       A++  +       A   L      +   L E  
Sbjct: 356  EFSRLADVEAQRLIAAAERDYPGATRKAIEARERAARQAAALRELAQVYPRYEAMLREAG 415

Query: 204  ASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
            A       +   +A  +H       +     +++        A+  L+  +        V
Sbjct: 416  ALDYGDLIVLPAQALRDHPAIAADLRRRYHYLLVDEFQDINYASGELIRLLDGGRGR--V 473

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
                D       +   +  + +        +    + L +    L    +    + +   
Sbjct: 474  WAVGDAWQSIYRFRGASAANLDEFPRYYPNAR--IFYLTRNYRSLQPILDAGAAVMSGDP 531

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                R  ++++       + +                        A   ++E  ++A  +
Sbjct: 532  RAAERPPLVAQRNGGGAHTVVEW---------------------AAPRSQDEYAALARDI 570

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL-HSSILTSLLNAI 437
               +    +  A   A R    R              +                      
Sbjct: 571  LRRVRLRNRWLASGCAARCRMPRSGTMRRVARRPPLSTRQWRFGDHAILCRTHEQAGAVA 630

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
              L         +       G  +     A+      A      +     L    L+R+ 
Sbjct: 631  AVLETHGIPVDYINDVFDTPGVKDALAVCAQVGATNSAGLLRALTMPEHRLDPADLNRLV 690

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                 +     ++    +            L  I  +V     +      L+ +   + +
Sbjct: 691  DLARRSQQALPRAARDPQIIACLSEAAQQTLARIRIIVEALEGEGDAWQVLT-AYLFRHS 749

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                  +       +           L ++    +   +  + +A  +ID I  L     
Sbjct: 750  RAMRARLIHAAQGHIRAQRELAALGQLLAIARNFVRAAAPDECDASHFIDYIRALRAAGV 809

Query: 618  VKPK--IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
                    +   + ++    ++ L F  + + GL EG           +           
Sbjct: 810  RPRSSIGGQVDAVRVMTVHAAKGLEFPIVYVPGLQEG-RFPVRGNQRGIPLPAGLIRGPI 868

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
             +E+   +      M      L+ +RSL   +                          +G
Sbjct: 869  ESEEQEERYLLYVAMTRARDRLVLSRSLTCGDGAKS-----------AERSSLLPGDGQG 917

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                   R ++     P                    S I  L         + + +L  
Sbjct: 918  NGAPWRVRFIESAVNCPVPTPDMRLQDTPLPRMPLPASSI-DLDGCKRRFLYQYVYQL-- 974

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
               +                   L ++      P     ++ ++    ++  L   +   
Sbjct: 975  ---YDDLSPFLRMHQTIRECAKILTEQARRDALPADEAGLRTLVFGQLQRYELDSVLYAD 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                   + H+    ++     +    V+    +   +  I +    DR
Sbjct: 1032 DYA-AEALRHARTVWDDLRTGRLSPECVDRRVIVRRPAGTIEV--RIDR 1077


>gi|302392793|ref|YP_003828613.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501]
 gi|302204870|gb|ADL13548.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501]
          Length = 707

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 78/692 (11%), Positives = 196/692 (28%), Gaps = 127/692 (18%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADL-LLSYNLNPP 102
           ++     T +A +E+R    ++  + S       + +   +       ++  L Y+ N  
Sbjct: 53  NLLAVTFTNKAAEEMRERIEKLIAQDSEDIW---MSTFHSIAVRILRREINKLGYDRNFT 109

Query: 103 V-SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
           +     +   +  +I    +  P   K                          +++ I  
Sbjct: 110 IYDTTDQQALIKDIIKNQLDLDPKQFKP-----------------------RSVLNQISN 146

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
            +    D+ A +      ++      +    + + ++L E NA       +  +    E+
Sbjct: 147 AKNDLIDVSAFQQGVGS-YFERV---VGEIYESYQQQLKENNALDFDDLIMKTVELFEEY 202

Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
            +     +     I++        A  RL++ +A       V+   D       +     
Sbjct: 203 ELVLEYYQNRFRYILVDEYQDVNHAQYRLINLLAEDHKNICVV--GDDDQGIYGFRGADI 260

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            +            + Q  + KL          +     V     GR             
Sbjct: 261 SNILDFE-----EDYSQTEIIKLEQNYRSTERILDAAYEVVRNNRGRKPK---------- 305

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA---LRMSLDENKKKSALIT 393
                      K+       + +   +A  E EEA  I      LR     +    A++ 
Sbjct: 306 -----------KLWTENDQGAPIKQYKARGETEEAEYITEEIMKLREEEALDYDDFAVLY 354

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R ++    + GI   I  G+          + + L  ++  +D + +  ++  P
Sbjct: 355 RTNAQSRVLEEVFRKQGIPYRIIGGLKFYERKEIKDILAYLRVLYNPSDDICLQRIINVP 414

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                             + +  + R+       ++  +++   
Sbjct: 415 -------------------------------KRGIGATTVGRLNNFAAQHNISLYEAVQR 443

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            E+ +         ++    L++Y   +      L ++         L+N+  ++  +  
Sbjct: 444 VEEIDSINSRCSGQVRRFNELMSYFRQRADELNALELTKELLDETDYLKNLRQEDTDQAR 503

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
           +    E  K L +   + IE    I          +  +     V     ++S + ++  
Sbjct: 504 S--RIENIKELLTDIEEYIEQEGDITLGGY-----LEEVALITDVDNLEAEASAVVMMTL 556

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + L G+ EG++P + + +                E    +    +     
Sbjct: 557 HSAKGLEFPVVFLSGMEEGLFPHSRSFD--------------DKEAIEEERRLCYVGMTR 602

Query: 694 TRH-LIYTRSLRE----NNIPTIASRWLQRLL 720
               L  T +L             SR+++ + 
Sbjct: 603 AEEKLYLTHALSRKIYGQRSYNPVSRFIEEIP 634


>gi|107100130|ref|ZP_01364048.1| hypothetical protein PaerPA_01001151 [Pseudomonas aeruginosa PACS2]
          Length = 1157

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 100/922 (10%), Positives = 240/922 (26%), Gaps = 73/922 (7%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L    V   R  PL PL    V ++  +    Q L+    E   +       I +  +V 
Sbjct: 11  LRDLAVSWMRRYPLAPLESERVLVH--SNGIAQWLKLALAEDPREDGGGGGGIAAALEVQ 68

Query: 86  ----EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                       +L     P VS + +     RL+ +    L            L+    
Sbjct: 69  LPAQFLWQAYRAVLGRESIPEVSELDKAPLTWRLMRLLPGLLERPEFRTLQRF-LADDAD 127

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLAADFLKIASKYWTER 198
                 LA+ LAD+ D  +     W D  +   ++               +  ++ W   
Sbjct: 128 LRKRHQLAERLADLFDQYQVYRGDWLDDWSQGRDQLRTANGQARPLGADERWQAELWRAL 187

Query: 199 LVELNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANH 252
           L ++ A S    +  + R   E L       +     +++ G +     T   ++ +A  
Sbjct: 188 LADVGADSLARSRSGVHRRFIEALRSASAAPRALPRRVVVFGISSMPAQTLEALAALARF 247

Query: 253 PNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
               + +     H    I             ++      ++       Q++   L  +  
Sbjct: 248 SQVLLCVHNPCRHHWADIVADKDLLRHEYRRQQRRAGVPADLDEDRQHQHAQPLLAAWGK 307

Query: 305 IKREDVKRLGNVSNEMYGRS------------------MVISKSFLPPDTSDMRNTDILE 346
             R+ +  L +  +    R+                    +               +  E
Sbjct: 308 QGRDYINLLDSYDDPDSYRNLFGEVNGGRIDLFSEEAPHGLLGQLQDDILELRPLAETRE 367

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRV 402
           +  P   +  + +    A + + E   +   L    + +     +   ++  D N     
Sbjct: 368 HWPPVAPRSDASIRFHVAHSAQREVEILHDQLLARFNADPSLKPRDVIVMVPDINAYAPH 427

Query: 403 KLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +        +  I   ++             L  LL           I  L+  P  
Sbjct: 428 IEAVFGQVPRDDQRFIPYTLADQGQRGREPLLIALEHLLKLPDSRFAVSEILDLLDVPAL 487

Query: 456 KFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVP 506
           +  F   E  L+     +E   +R   ++     L        +     +        V 
Sbjct: 488 RRRFGVDEADLATLHRWIEGAGVRWGLDAAQRERLGLPAGLEGNSWRFGLRRMLLGYAVG 547

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              +    +  +    L   +   +  L+       +     +        +  L  V  
Sbjct: 548 EGAALQGIQPYDEVGGLDAALAGPLAVLLERLEVAYAELAEPATPAQWGERLQALLTVFF 607

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
           + H +   L   +  + L                      +     +D   +  +    +
Sbjct: 608 EAHDERDELLLTQLLQLLERWQEHCACAAFAEPLPISVIREAWLGGLDQGGLNQRFLAGA 667

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            +     +  R + F  + L G+N+G +P+  +   F           ++  +       
Sbjct: 668 -VSFCTLMPMRAIPFRLVCLLGMNDGDYPRQQSPLDFDLMRNDYRPGDRSRREDDRYL-L 725

Query: 687 DFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
              + +    L  +   R   +N     S  + +L       +  +    G+  L    +
Sbjct: 726 LEALLSAREQLYVSWVGRSIRDNGERPPSVLIGQLRDHLAAGWRLDPDGDGEALLRALTQ 785

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                 QP  +R     P +     ++++   + ++    +              +    
Sbjct: 786 --EHPLQPFSRRYFHDAPEQGVDGLFTYAREWREVHSEDDIAVPDAEASLPPLELEGALG 843

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKI 863
                    N +    ++R+     +    +    +  FE + L              + 
Sbjct: 844 LRALAEFLANPVNAFFQQRLKVRFDD--EQLTGNDEEPFELDALDNWKLQFELTERMKRW 901

Query: 864 SHSFLEHEEKIQSSIEKIFVNI 885
                + + +   +  +  V  
Sbjct: 902 VER--DWDAEGLPAQLQAQVER 921


>gi|269215901|ref|ZP_06159755.1| conserved hypothetical protein [Slackia exigua ATCC 700122]
 gi|269130851|gb|EEZ61927.1| conserved hypothetical protein [Slackia exigua ATCC 700122]
          Length = 890

 Score = 93.1 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 67/594 (11%), Positives = 154/594 (25%), Gaps = 83/594 (13%)

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            L L R     +    P     L E     A +  D ++     +      +  +     +
Sbjct: 281  LALGRSRCLTDFLLSPFSGYSLREAYAIDAAVRADRLMTVDACMDRVIAGREESRYMSEL 340

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
             +     + C   V      +  +  + +E  +    + +  E    +     +  ++ +
Sbjct: 341  VEDLDADILCGYLVESASRHRDGDEAYRQEQISAIRAWRQCAEAVRFVGGCIEDAFELFS 400

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP-FLSRVMQ 669
                   V         +      ++         +    +        K+P   +R + 
Sbjct: 401  A--ASIDVSRASGPDPRVVYARQEDAAGFEPGRFDVVVACDMTTSSYPVKDPSDAARTLL 458

Query: 670  SDLNLKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI-PTIASRWLQRLLVLGGTD 726
              L +  +E  I +    F  A           R L +    P      LQ  L      
Sbjct: 459  GKLGVAGSEPPIDRQRRRFMRALRLAKSSFAIERPLNDEAAAPAYPCAVLQEYLDACKDA 518

Query: 727  FFDNLKKRGQCYLDWTRK---------------------------LDYTTKQPHYKRPK- 758
              D + +                                      L    +      P+ 
Sbjct: 519  PDDRMARPFDLPASCADAARSIGEDALYENVVSSASPQKTKTTIELPRPGEIAPASLPRL 578

Query: 759  ---PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                  P       +S S+I++ +  PY  +  R +         +     ++G   H I
Sbjct: 579  VLRHALPEGGCAPVFSPSQIERYLECPYRWFVERRVNPR---GIDEGFGPLEKGDFAHAI 635

Query: 816  ITELIKKRINKN----TPEINHLMKQIIDSHFE-----------------KENLPPHIDI 854
            + ++  + I++     T  +      ++D+ F+                 +      ++ 
Sbjct: 636  LHDMYAQLISEGVSKVTDAVVPHALDVLDACFDARLSAQRAVDAVDVFSSRLIATSEMER 695

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA--IESIGIHLTGFADRIDLLKSGF 912
                      H  +  E         + +     +   +   G+ + G  DR+D   +G 
Sbjct: 696  REVGELRAALHRLVRFEPSFLPHGRPVMLERRISLEDGVAYAGVRMRGTIDRVDATDAGC 755

Query: 913  VDITDYKTGDNPKK-----ETAQKLIDPQLSLEAAALKAGSFSQIDC--------RKVAN 959
              + DYK G                   Q  + A  ++      +           +VA 
Sbjct: 756  AVVVDYK-GSATSAHDSFSADGTVQGKVQTLIYAQMIRRSLGLDVGAAVYLGYRDARVAG 814

Query: 960  LFYIRLKQKFKIDCITNDKKK------YSADELSEKSLKNLIEIVTLLQNGEQP 1007
             F  R         I             S ++L + + + +   ++ +Q G+  
Sbjct: 815  AFDARRFGPEHFPGIKPKGAACGSGGRMSFEDLLDATEERVARALSRMQAGDIA 868


>gi|160895969|ref|YP_001561551.1| exodeoxyribonuclease V subunit gamma [Delftia acidovorans SPH-1]
 gi|160361553|gb|ABX33166.1| exodeoxyribonuclease V, gamma subunit [Delftia acidovorans SPH-1]
          Length = 1174

 Score = 93.1 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 97/883 (10%), Positives = 218/883 (24%), Gaps = 108/883 (12%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L  T++      PL+  +L    + V +    +  +    E  G  +      +     
Sbjct: 19  VLADTVLAWLAAHPLD--VLEPEVVLVQSNGMAEWFKMRMAEQLGVCAA----ARVELPA 72

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                +   +L     P  S + +     RL+ +    L D      P +    P  P  
Sbjct: 73  RFVWRSYRQVLGRQAVPRESPLDKTPMTWRLMRLLPQCLHD--PAFAPIAGFLRPGEPER 130

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS------KYWTER 198
            + LA+ LAD+ D  +     W D     ++   M          +        + W   
Sbjct: 131 LLQLAQRLADLFDQYQIYRADWLDAWEAGHDVLPMPLRPGVADATVPEGQQWQPRLWRAV 190

Query: 199 LVELNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANH 252
           L EL+       +  L       L             +++ G +    +    ++ +A H
Sbjct: 191 LAELDEDQRGATRARLQGRVLAALQSGEAPAAPLARRVVVFGISQLPLSLLEFLAAMARH 250

Query: 253 PNGAIVLPGLDCHIPTAIWNTIT---------EKSTNITSSNTTYSTHPQYSLAKLLDFL 303
               + +P           +                    +         ++   L  + 
Sbjct: 251 SQVLLAVPNPCRFHWADAIDGRELLRMARRRQPLRGGRDLAQLPLEAMHAHAHPLLAAWG 310

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFL----------------PPDTSDMRNTDILEN 347
              R+ V++L           + + +  L                           + E+
Sbjct: 311 RQSRDYVRQLDAFDTTGAAAQLQMPRVDLFDETDAEDLRTAPLLAQVQQRIRDLVPLAEH 370

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN------------KKKSALITAD 395
               + +    +    A +   E   +   L   L                +   ++   
Sbjct: 371 PPLEVARADRSIVFHSAHSVVRELEVLHDQLLQMLARPPDPAQPGQAPLAPRDVVVMLPS 430

Query: 396 RNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
              A      +           I  DI+     +++  +  L  LL    +      +  
Sbjct: 431 IETAAPSIRAVFGQYGRHDPRHIPFDIADLGARASSPLAVALQWLLRLPQQRCRLSELCD 490

Query: 449 LVKHP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL----------KSLVLDRI 496
           L+  P   A+ G     L +    +    +R   N+     L              L R+
Sbjct: 491 LLDVPAIAARMGLAADDLPQLTRWMAGAGIRWGLNAPQRGALGLQACGEHNSAWFGLQRM 550

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                       Q+    E  +    L   +   +  L+          G  +  +    
Sbjct: 551 LLGYAGGVAQDGQAFGGIEPYDEVGGLSAELAGVLAALLERMLAWWREAGRPATPEAWAQ 610

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L                      L+       + G           +   + ++  
Sbjct: 611 RFRALLQDFFKAQDDEDEAMLAALDAALTDWQRACEQAGYADAVELGVAQEAWMQALEQP 670

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
           ++  +  ++  +     +  R + F+ + L G+N+G +P+   ++ F    +        
Sbjct: 671 SLSQRF-RAGGVTFCTLMPMRAIPFEVVCLLGMNDGDYPRRATRSDFDLMALPGQQRPGD 729

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE---NNIPTIASRWLQRLLVLGGT-------- 725
             +         E     R  +Y         +N     S  + +L     T        
Sbjct: 730 RARRDDDRQLMLEALLSARRALYISWTGHHVRDNSEQPPSVLVSQLRDYLETGWRGEGGQ 789

Query: 726 --------------------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                               +         + +     + D T   P        P +  
Sbjct: 790 PLLAQRTQQHPLQPFSRRYFEEGSPWTTYAREWRAAHAQSDGTDVLPALPAQPRPPFVPD 849

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                + + +   +  P   Y R+ L++ F        D    
Sbjct: 850 ASAPLTLARLTDFLRHPARAYLRQRLQVRFEQEDNPVVDEELF 892


>gi|33240540|ref|NP_875482.1| exonuclease V gamma subunit [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33238068|gb|AAQ00135.1| Exonuclease V gamma subunit [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 1103

 Score = 93.1 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 91/723 (12%), Positives = 198/723 (27%), Gaps = 54/723 (7%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
              L   L    R +   P    SV I V T    + L  +     G  + I        
Sbjct: 10  AEWLAEVLAAQLRLNKPKP--FQSVEIMVNTWPTSRWLSEQIATFNGISALI--EFPFPN 65

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
             + +     L L      P +  Q   E+  ++     +        + +   +     
Sbjct: 66  SHLRKFVQLFLGLEVTSKDPWNTNQLTWEIIDVLPKLLKEEESKHLHEWIQKGSNNNKEL 125

Query: 143 ANAIW-LAKNLADIIDIIETEEKKW-EDLHALKN------EKYGMW--WL-LAADFLKIA 191
              IW LAK++A+ I+               L +              W  L    LK  
Sbjct: 126 DKRIWTLAKSIANTINEYILYRPDVIAQWWNLDSKPTKSLRDLPPHIKWQPLLLRLLKTK 185

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
            K     L      + +           EH  K     ++I G +   P    L+  +++
Sbjct: 186 IKSEPICLQINEVVTRLKR--------KEHSSKELPRDLLIFGVSSLAPIQIELIQALSS 237

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
             N  I L      +     +   E   +               +   L  +  + + + 
Sbjct: 238 VVNVQIFLLTPGQDLWKRCKSRREELGNDWKVPMDGMWMLKTPRIEASLGRMGSEFQQLL 297

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI--------- 362
                      +   +    +   T + +    LE    ++    + + L          
Sbjct: 298 EGSGEYQLGEWQEKDLFSMPVKIATYNSKEPTFLEQLQESLVVNKASIQLHRKHKDNSLI 357

Query: 363 --EADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL------TRFG 410
             E+  +R +   I   +   L        +   ++T        +   +      T   
Sbjct: 358 FLESPGQRRQVQLIRDQIIQWLATDDTLQPRDIIIMTPQVKRLAPLISSVFNDISATNVN 417

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG--FPEKYLSRAK 468
           +   I+    +        +   ++        + +  L+ +P  +      +  + R  
Sbjct: 418 LPWKITDRSQIEKPGLIQFILEFIDIASSRLTALNLDRLLTNPALQNQFKLDQDEVDRIT 477

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA--VLLVDH 526
             L     R   +  D     +  L+    +     V   +    E D         V+ 
Sbjct: 478 YCLYETGFRWGIDEKDRNGNSTHSLEWCLERWLLGIVLPNEPNFVEGDIAPFSSTFTVNE 537

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           I +    L     +  +   +   + W     + + ++  +E       W  E       
Sbjct: 538 ITKWWNLLSLLCKHLKALRNSRKSNQWVFQLKSIVTDLLENES---NRTWEGELFNITIE 594

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            +S+       +    +   +I+T L   E  +    +S  + I      R +    ++L
Sbjct: 595 NWSQDSNDC-ILNIQPLVIKEILTELFSLENGRFGH-RSGKITISALEPMRAIPHRVIVL 652

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
            GL+E V+P++  +  F     +  L                 + +  +HL+ T + R+ 
Sbjct: 653 MGLDELVFPRSEERPSFNLLEQKRLLGDPNNCDKDRYV-LLEAIMSCRQHLLITWNSRDE 711

Query: 707 NIP 709
              
Sbjct: 712 KTG 714


>gi|317488584|ref|ZP_07947129.1| ATP-dependent DNA helicase PcrA [Eggerthella sp. 1_3_56FAA]
 gi|325832008|ref|ZP_08165105.1| putative ATP-dependent DNA helicase PcrA [Eggerthella sp. HGA1]
 gi|316912326|gb|EFV33890.1| ATP-dependent DNA helicase PcrA [Eggerthella sp. 1_3_56FAA]
 gi|325486329|gb|EGC88781.1| putative ATP-dependent DNA helicase PcrA [Eggerthella sp. HGA1]
          Length = 813

 Score = 93.1 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 77/711 (10%), Positives = 171/711 (24%), Gaps = 108/711 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     + G +   +  + +   +      +D             
Sbjct: 54  EILAITFTNKAAAEMRERLNGLVGPRCRGM-WVSTFHSMCVRMLRSDAEKL--------G 104

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET---E 162
             R   +            D  K LY E    L I P      A     +++ I T   E
Sbjct: 105 FTRNFTIYD---------TDDQKRLYKEIMAELDIDPKRFPVNA-----LMNRISTAKNE 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RA 217
                       +                     ERL   NA       +          
Sbjct: 151 LVVPSAFEKEAGD-------PVGKVASRVYSRLQERLKAANAFDFDDLLLYAYLLLKNHE 203

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           +     +     I++     +  A   +   +A      +V+   D       W     +
Sbjct: 204 DVRSAYQQRFRYIMVDEYQDTNHAQYSITGLLAEGHKNIMVV--GDDDQSIYSWRGADLR 261

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +                               + ++      +       +  
Sbjct: 262 NILEFEQDYP--------------------------TAHTVKLEQNYRSVGNVLAAANAV 295

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR--MSLDENKKKSALITAD 395
              N      K+    +    + +  A +ER+E   IA  +    +   +  + A+    
Sbjct: 296 IANNQHRKAKKLFTSAEDGDKIQVYMAADERDEGRWIAGEIEKQRAAGLSYNQVAVFYRT 355

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L R G+   I  G           + + L  +    D +A   ++  P  
Sbjct: 356 NAQSRMLEDMLLRAGVPYRIVGGTRFFDRAEIRDVMAYLTLVVNPADDIAAKRVINVPRR 415

Query: 456 KFGFPEKYLSR-AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN------------ 502
             G             + +  + G + +    +L++     I                  
Sbjct: 416 GIGKTTIERIEQFAREMGMTFMEGAELAIVDPELRASARQAIGEFVGLVNEARTYGGDLR 475

Query: 503 ------THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                          L  E+ + A   +++I + +  +  +                   
Sbjct: 476 KVIEMIIDKSGLIGALQAENTDEARGRIENIQEFLGVVDEFTETHEDEDALYEAPTAEPA 535

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L  V         + +       L++      E             D I  +    
Sbjct: 536 DAPALAPVPSSADAPAGSFYAFAGANELAAP----AEESPVRVLRGDSLADFIEWVRLRT 591

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +    E    + ++    S+ L FD + + G+ E ++P   +         +  L    
Sbjct: 592 DLDTVAEDGHAVTMMTVHSSKGLEFDCVFVAGMEETLFPHMNSVGDAAGIEEERRLA--- 648

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE----NNIPTIASRWLQRLLVLG 723
                        +    + L  T +              SR++Q +    
Sbjct: 649 ----------YVAITRARKKLFLTCAYARQIFGQTSSNPISRFIQEIPSEL 689


>gi|183983094|ref|YP_001851385.1| hypothetical protein MMAR_3095 [Mycobacterium marinum M]
 gi|183176420|gb|ACC41530.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 293

 Score = 93.1 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 71/237 (29%), Gaps = 17/237 (7%)

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
               S S        P     R I +L              RG++ H  + +L      +
Sbjct: 14  RPALSPSRAADFKQCPLLYRFRAIDRLPEK-----PSTAQLRGSVVHAALEQLYALPAVQ 68

Query: 827 NTPEINHLMKQIIDSHF--EKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIF 882
             P+    + +         + +L   +    +    + + + L   +  +     +   
Sbjct: 69  RGPDTARSLVESAWEQVIAGELDLAGELAADQQAQLLEDARALLSGYYRLEDPRRFDPQS 128

Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLE 940
                ++ +    + L G+ DRID+  +G + + DYKTG  P    A        Q+   
Sbjct: 129 CEQRVEVELADGTL-LRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFY 187

Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
             AL             + L  I L     +D   +  +    ++      + +   
Sbjct: 188 GVALFRS-----RGVLPSRLRLIYLADGQVLDYSPDRDELLRFEKTLMAIWRAIQSA 239


>gi|50119933|ref|YP_049100.1| exonuclease V subunit gamma [Pectobacterium atrosepticum SCRI1043]
 gi|49610459|emb|CAG73904.1| exodeoxyribonuclease V gamma chain [Pectobacterium atrosepticum
           SCRI1043]
          Length = 1132

 Score = 93.1 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 90/735 (12%), Positives = 188/735 (25%), Gaps = 75/735 (10%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
                  I V +    Q L+ E     G  + I      L  V        +L       
Sbjct: 28  DPFQQEVILVQSPGMAQWLQIELATDFGIAANIQ---FPLPGVFLWNMCRHVLPDIPKES 84

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             S      +L  L+      L            L    +      LA  +AD+ D    
Sbjct: 85  AFSKDAMTWKLMHLLP----DLLAQPDFSALNHYLQDDDNQRKLHQLAGRVADLFDQYLI 140

Query: 162 EEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
               W                 L    L  A   +T  L +             +RA   
Sbjct: 141 YRPDWIKAWQEGKLVDDLGGNQLWQSALWRALVDYTRELAQPEWHH-AILYQRFIRALEH 199

Query: 221 HLMKGTKGP--IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN------ 272
                   P  + I G +   P   + ++ +A H +  ++      H  + I +      
Sbjct: 200 AKTCPKGLPPRVFICGISALPPIYLQALNALAQHIDVHLLFTNPCRHYWSDIQDYKFLAK 259

Query: 273 -TITEKSTNITSSNTTYSTHPQYS--------------------------------LAKL 299
                +  +      T  T P +                                 L  L
Sbjct: 260 LKARNRRLHRFDREQTDETRPLFRDLSQAETLFNDDGKQSINNPLLASWGKLGRDNLYLL 319

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            +  +++  D     +  N +      I +       +    T     +   ++     +
Sbjct: 320 AELDNVQEIDAFVESDGENLLQTLQRDILELEDHAIVAVSHETQNTSAQKRRLEPDDRSI 379

Query: 360 ALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFG 410
                 + + E   +   L   + ++     +   ++ AD +        +         
Sbjct: 380 DFHACHSPQREVEVLHDRLLAMMADDPDLMPRDVIVMMADIDSYTPFIQAVFGNAPDNRY 439

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAK 468
           +   IS             + SLL+          +  L++ P    +FG  E+ L R +
Sbjct: 440 LPFAISDQRARHAHPALQAVISLLDLPTSRFTAEQVLALLEVPALAARFGIQEEGLRRLR 499

Query: 469 NALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
             +    +R   +  ++ DL        +                           + + 
Sbjct: 500 LWVVESGVRWGLDDDNVRDLMLPPTGQHTWRFGLTRMLLGYAMDSQVGDWQGVLPYDESS 559

Query: 522 LLVDHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
            L+  +   +  L+      +        + DW  L    ++     +      L   E+
Sbjct: 560 GLIAELAGQLAELLMQIHQWRQRLSQPRLLVDWLPLCRELIETFFDADSETEAALALVEK 619

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
                     +      +  +     D ++R +D E +  +    + +     +  R + 
Sbjct: 620 QWQHVIGMGTMAYYPQQVPISR--LRDELSRRLDQERLSQRFLAGA-INFCTLMPMRSIP 676

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIY 699
           F  + L G+N+GV+P+      F   +M   +      +         E     +H L  
Sbjct: 677 FKVVCLLGMNDGVYPRTLPPLGF--DLMGRKIKRGDRSRRDDDRYLFLEALLSAQHKLYI 734

Query: 700 TRSLRENNIPTIASR 714
           +   R     T    
Sbjct: 735 SYIGRSIQDNTRRYP 749


>gi|325274375|ref|ZP_08140468.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas sp. TJI-51]
 gi|324100491|gb|EGB98244.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas sp. TJI-51]
          Length = 899

 Score = 93.1 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 95/816 (11%), Positives = 208/816 (25%), Gaps = 73/816 (8%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79
           L   +V   R  PL P  L +    V +    Q L+          +  G        ++
Sbjct: 22  LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPLEDDQGGCGIAAAIEVQ 79

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
             G  + + + +  +L  +  P VS + +     RL+ +    +     +      L+  
Sbjct: 80  LPGSFMWQLYRS--VLGRDEIPEVSLLDKAPLTWRLMRLLPALIERPHFEPLRRF-LTDD 136

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-----GMWWLLAADFLKIASKY 194
                   L++ LAD+ D  +     W  L      ++                +  ++ 
Sbjct: 137 GDLRKRYQLSERLADLFDQYQVYRADW--LRDWAAGEHVLNTARGERKALPPANRWQAEL 194

Query: 195 WTERLVELN----ASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMST 248
           W   L ++     A S  G     +                +I+ G +         ++ 
Sbjct: 195 WKALLEDVGEKGMAQSRAGVHQRFIERINSLEQAPPGLPSRVIVFGISSLPAQALEALAG 254

Query: 249 VANHPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
           +A      + +     H    I             ++               Q++   L 
Sbjct: 255 LARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQALHQHAHPLLA 314

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNTDIL 345
            +    R+ +  L +  +    + +                                +  
Sbjct: 315 AWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSDGSPATLLNQLQDDILELRPLAETR 374

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARR 401
               P        +    A + + E   +   L            +   ++    +    
Sbjct: 375 ALWPPVDPANDRSIRFHIAHSPQREVEILHDQLLARFSADPTLRPRDVIVMLPAIDTYAP 434

Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP- 453
               +           I   ++             L  LL           +  L+  P 
Sbjct: 435 HIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSRFAVSEVLDLLDVPA 494

Query: 454 -LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHV 505
             A+FG  E  L      +E   +R   ++     L       ++     +        V
Sbjct: 495 VRARFGIRENDLPTLHRWIEGAGIRWGLDAEQRASLGLPAGLEQNTWRFGLRRMLLGYAV 554

Query: 506 PHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
              ++    E  +    L    I   +  L        +     ++S W +     L   
Sbjct: 555 GVGEACDGIEPYDEIGGLDAALIGPLVALLDALDVACQALAEPATVSQWGERLHALLHVF 614

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
            L E      L  +       S        G           +     +D   +  +   
Sbjct: 615 FLAEDEHDEFLLIQ-LQDLRDSWLEVCETVGLQDPLPLTVVREAWLSGLDQGKLSQRFLA 673

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
             ++     +  R + F  + L G+N+G +P+      F           ++  +     
Sbjct: 674 G-SVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQQPLDFDLMASDYRPGDRSRREDDRYL 732

Query: 685 AHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                + +    L  +   R   +N    AS  + +L       +  N  ++GQ      
Sbjct: 733 -LLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHLAAGWQLNGAQQGQATQAGE 791

Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
           + L   T++   +   P    +  P      E + L
Sbjct: 792 QLLHALTQEHPLQPFSPRYFQKGSPLFSYAHEWQVL 827


>gi|307292809|ref|ZP_07572655.1| double-strand break repair helicase AddA [Sphingobium
            chlorophenolicum L-1]
 gi|306880875|gb|EFN12091.1| double-strand break repair helicase AddA [Sphingobium
            chlorophenolicum L-1]
          Length = 1147

 Score = 93.1 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 88/883 (9%), Positives = 210/883 (23%), Gaps = 99/883 (11%)

Query: 105  NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL---ADIIDIIET 161
             ++R   +AR   +   +    + DL+     +     + A   A  +    D I  +  
Sbjct: 268  ALERCDRIARWRNLGPAERAASLTDLHGVWAKADGELISTAKGWAPQVDGYGDAIARMHE 327

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--- 218
                 E L       Y +         ++ ++ + E      A           +     
Sbjct: 328  RC--GELLGIRVRAAYAVLLAKGLQAGRVYARSYAEAKQLAGAVDFNDLIANSAQLLSQP 385

Query: 219  -----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP---------NGAIVLPGLDC 264
                   + +      I++  +  +     R++ ++A                +    D 
Sbjct: 386  GIADWIRYKLDQRIDHILVDEAQDTNADQWRIVRSIAEEFFTAEWEPGQKVRTIFTVGDF 445

Query: 265  HIPTAIWNTITEKSTNITS---SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                  +   + ++                  +    L          +  +      + 
Sbjct: 446  KQAIFGFQGTSPQNFAAAQFLFERDARQAGHLFHDLSLERSFRSTPAVLDVVDRTIATLS 505

Query: 322  GRSMVISKSFLPPDTSDMRNTDIL--ENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                 +    +   +++    ++L  +  I  + +         AD ER  A +IA  +R
Sbjct: 506  AERFGLEAGEVRHVSANRFPGEVLLWKPVIAGLSEEAEGEEDWAADQERVLAQTIARQIR 565

Query: 380  MSLDE------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
              +D+                  L+     LAR +   L    + +     + L+  L  
Sbjct: 566  QWIDDGLMLESRGRPVTAGDILILVRRRSELARLIVARLYEEKVAVAGIDRLRLNAPLAV 625

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
              L + L    +  D + +A L+  PL  +             +                
Sbjct: 626  RDLLAALRFAVQPEDDLNLAALLVSPLIGWTQDALMDRLIGRRV---------------G 670

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
            L   +   +                          ++   +     L+     + +    
Sbjct: 671  LWQHLTQTLDAALLEPLRGLLGQADFTTPYRYLEAILSGPMDGRRRLIERLGAEAADPIE 730

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              ++           ++           WF+     +    +   +    +  +  + + 
Sbjct: 731  ELLNAALAFENDDYPSLQRFID------WFDRGEVEIVRDAAAQGDMLRLLTVHGAKGLQ 784

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                ++    + P                     D+L   GL      K   +       
Sbjct: 785  APIVILADACLDPDA---------------GNRADSLEWNGLPIIAPRKAERQG-----A 824

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
            +       +A +        +         +                      V G    
Sbjct: 825  IGQVAEEASAVERAEHWRLLYVALTRAEERLVVTGSLGPRAKGEVKPESWYAAVEGALIS 884

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS---FSEIKQLINDPYA 784
             D   +    +    R   +    P                       + ++     P A
Sbjct: 885  LDAEWEADPLWGARRRWRGHEILPPKAAETDIAENGAVHGEPGWLRKPAPVEARPPRPLA 944

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
              A     + + P      D  +RG   H +   L                +   D    
Sbjct: 945  PSATVEDDVPYPPPTPAMRDAAERGRWLHRLFERLADVPPGDR--------RARADKWLA 996

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
            ++ L        RH   + +   +E  +             P    +      + G  DR
Sbjct: 997  QQGLGDAAR---RHDVIEQALRVIEDPQYAALFGPDALAEAPIAAVVGEA--VIAGTVDR 1051

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945
            +  +    V + D+KTG        +  +    Q++  AAAL+
Sbjct: 1052 L-RIGDDLVQLIDFKTGRISPLAVEEVPLAHVRQMAAYAAALQ 1093


>gi|114762246|ref|ZP_01441714.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Pelagibaca
            bermudensis HTCC2601]
 gi|114545270|gb|EAU48273.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp.
            HTCC2601]
          Length = 1125

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 80/856 (9%), Positives = 202/856 (23%), Gaps = 111/856 (12%)

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
            +       L   L D++  +E   +    L A+  E           F +     +    
Sbjct: 295  LRTGALEPLMNRLEDLMRRVEQARQTRLALGAVGREL------ALHRFAQAFLPAYETEK 348

Query: 200  VELNASSPVGYQIALMRAEAE--------HLMKGTKGPIIIAGSTGSIPATARLMSTVA- 250
                        I      ++        + + G    I++  +  + P   +++  +A 
Sbjct: 349  QRRGWLDFDDLVIRARDLLSDERVAEWVLYRLDGGIDHILVDEAQDTSPVQWQVIERLAH 408

Query: 251  --------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH----------P 292
                           +    D       +     +  +                      
Sbjct: 409  EFTSGEGARADVRRTIFVVGDKKQSIYSFQGADPREFDRMCDEFAERLQRTEAPLSRMML 468

Query: 293  QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
            +YS       L +      R    +     +     KS +P       + +  ++     
Sbjct: 469  EYSFRSAEPILRLVDNTFDRR-EAAGFSQDQKHRAFKSEMPGRVDLWPHVEPTKDDEEEA 527

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSL------------------DENKKKSALITA 394
                    + +  +    A  IA  +  ++                          L+  
Sbjct: 528  DWYEPVDRIGQRHHAVILANRIAGFIDRTIGTPLPEEIGHSGSYKTRPAHAGDFLILVRG 587

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               L   +     +  + I  +  + + + L    + +LL  +    D +++AT ++ PL
Sbjct: 588  RGTLFSEIIRACKQHNLPIAGADRLKVMSELAVKDIGALLAFLATPEDDLSLATALRSPL 647

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                  + +                + + D +     VLD + ++ +         R+  
Sbjct: 648  FGLTQQQLFTLAQGRK--GYLWAELRRNRDAVPRVMSVLDDLRSETDFLRPYDLIERILT 705

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                   LL     +    +        +                               
Sbjct: 706  RHDGRKRLLGRLGEEAEDGINALLAQALAYEQT------------------EVPSLTGFL 747

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
             W + +   +             +  +  + ++    ++          + S L      
Sbjct: 748  EWLQTDDLEIKRAPDSAGSRIRVMTVHGAKGLEAPIVILPDCAEPNSQIRDSLLE----- 802

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
                    T+     +     +               L          +    +      
Sbjct: 803  ----GETGTVWKASADRQPQVQA------------QALAEAKEADQRERDRLLYVALTRA 846

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
               +   +  +      A     R+ +             G    +             +
Sbjct: 847  EKWLVVAAAGKLGSQGNAWYDQVRIGMERSGAEPTEFGFGGWGSGEGLTLGRADWSDLPH 906

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI--PHFKKDPDRTDRGTLF 812
            +R +  P +E                   AV    +     +         +   RGT  
Sbjct: 907  ERVEETPRIEVDLPDVFRHPAAVPEAVAEAVSPSGLGGPKALGGEDGDDTEEAMLRGTAL 966

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H ++  L           + H++  I++   E+ +              + + + LE  E
Sbjct: 967  HLLLEHLSALPPAARPDAVPHVL-AIVEELPEETD-----------RLAEEAIAVLETPE 1014

Query: 873  KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQ 930
                        +P   +IE +G  + G  DR+ +     + + D+K+            
Sbjct: 1015 LGPFFAPGSLAEVPISASIEPVG-RIHGIIDRLLVTPDKVIAV-DFKSNRTVPATPAEVP 1072

Query: 931  KLIDPQLSLEAAALKA 946
            + +  Q+   AAAL  
Sbjct: 1073 EGLLRQMGAYAAALAQ 1088


>gi|168701104|ref|ZP_02733381.1| UvrD/REP helicase [Gemmata obscuriglobus UQM 2246]
          Length = 1127

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 106/923 (11%), Positives = 224/923 (24%), Gaps = 113/923 (12%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
                P      P +   R ++   +   L               S+     +  + ++L 
Sbjct: 209  AGDGPRQVRAGPGTGKTRTLV-GRVVHLLRARNVPAG-------SILALTYSNLSAKDLA 260

Query: 62   SEFIEITGKKST--ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIW 119
            +      G K+T        +      E       +     PP   + R   L  L  + 
Sbjct: 261  ARIRAAVGDKATAVWS---GTFHAFGLELLRKHGHVLGMEGPP-KLLDRTDSLMFLEQLL 316

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179
                 +   DLY   P        NAI  AK+     +           L +  +     
Sbjct: 317  PQLPLNHYLDLYE--PARALKDILNAIGRAKDDLVTPERYGE--LAHAMLASASDPDAIT 372

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAG 234
                A + +      +   L               +     H       +     I++  
Sbjct: 373  RAEKALE-VANVYSVYERELRSQWRVDFGDLVARPVELLRAHPEVRDAVRDQYRHILVDE 431

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
                  A+A  +  +     G  V+   D       +   +  + +    +         
Sbjct: 432  YQDMNRASAHFLKEIVTPKAGPWVV--GDVRQAIYRFRGASPLNMSRFEQDFPG------ 483

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
                 +  L +        G +          ++ + L P++              +  +
Sbjct: 484  ---AAVTDLTVNYRSG---GKIVRAFEAFGQKMTAAPLAPNS----------GLTAHRGE 527

Query: 355  CFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
               +V    A +   EA  IA A+  R S     +   ++        R+   L R G+ 
Sbjct: 528  TNGNVLYDVAVSREAEAEGIAQAIKKRQSDGVPFRHQVVLARSHTTLARLAGHLERSGVP 587

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
                             L SLL+ + +      +        A        +   +    
Sbjct: 588  CLYFGD--FFERPEVRDLLSLLSVVSEKRGVGLLRVAQMPQYAVPPADIIKVVEWRREQA 645

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
            +  L   + + +I DL  +    I     +T    W         E      +H+   + 
Sbjct: 646  ISMLSALRRADEICDLTDVGRAGIKLLVFDTRHWSWTVSPHRFLTEYLFGSGEHVRLLLA 705

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
                                                  +   L   +  +   +      
Sbjct: 706  --------------------------------GNTVQDQQRRLAVYQLLQFAFAFKPPEK 733

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
            E       N +  + I+        +         + ++    S+ L F  + L  L + 
Sbjct: 734  EDPKHAFLNHVRRLTILDEEKQLRQLPAAAGDIDAVRLMTVHASKGLEFPVVHLVSLAKT 793

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
            ++P     +P          +         ++     M+     L  +RS     +    
Sbjct: 794  IFPLGNRSDPCPPPAGMIAADDLLTATAEEESLFFVGMSRAKDVLHLSRSETNGAVKRGP 853

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
            S +L             +L K       W         +P                  S+
Sbjct: 854  SSFL--------EHVTAHLPKAVDAAAGWKNLGHQAKGRPRLAAAAVTGAW-------SY 898

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
              I+     P   Y    L L+               +  H  +  L   R      E +
Sbjct: 899  YAIETYDECPRRYYYDHALALNARDEEGPYL---QFQSALHASLAWL---RSVPQAAERS 952

Query: 833  HLMKQIIDSHFEKENLPPHIDI-IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
              ++   +  + +     H     +R +  K+  + L   +          + +   + +
Sbjct: 953  AGIRAQFELDWSEHGPQGHAFEPFYRGIADKMIANALAVMDGQ-------ALPVDRTVTL 1005

Query: 892  ESIGIHLTGFADRIDLLKSGFVD 914
               G  +   AD I+   +G V 
Sbjct: 1006 PETGAVVNCRADHIEATSAGVVI 1028


>gi|256544666|ref|ZP_05472038.1| hypothetical protein HMPREF0078_0295 [Anaerococcus vaginalis ATCC
           51170]
 gi|256399555|gb|EEU13160.1| hypothetical protein HMPREF0078_0295 [Anaerococcus vaginalis ATCC
           51170]
          Length = 1119

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 42/240 (17%)

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             +S SEI+     PY  +    L+     +     D  + G + H  +  + KK I+ +
Sbjct: 766 NKFSVSEIETYAKCPYKYFINYGLRAKENKNLD--VDNLEIGNIVHYNMENISKKLIDMD 823

Query: 828 TPEINHL-MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE---HEEKI--------- 874
             E++   ++ ++   F+K       + +     +   + F+    +E            
Sbjct: 824 LKEVDDEKLENLVKESFQKAIE----NSLDLGRANDNKNKFILSNIYESTQKSSKKIINQ 879

Query: 875 --QSSIEKIFVNIPA-------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925
             + + +   V           ++ ++     L G  DRID      + I DYKTG    
Sbjct: 880 IKEGNFKIDSVEEKYGKGGKYPEVYVDDKNY-LEGRIDRIDK-CDNLLRIIDYKTGS--- 934

Query: 926 KETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
            +  +       +D QL +   A K      +        FY  LK + K      DK +
Sbjct: 935 -KEIKIYNLLNGLDLQLFVYMLAAKEKKSENLFPV---ASFYFPLKDEVKKLEKNYDKDE 990


>gi|238897902|ref|YP_002923581.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465659|gb|ACQ67433.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 731

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/543 (9%), Positives = 127/543 (23%), Gaps = 86/543 (15%)

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATA 243
           +   + + E              +        H       +     I++     +     
Sbjct: 171 RDIYQSYQEATDRAGLVDFSELLLRAYELWLNHTNILDHYQQRWSHILVDEFQDTNTVQY 230

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             +  +A     A V+   D       W      +      +                  
Sbjct: 231 AWIRALAE--KRAKVMIVGDDDQSIYGWRGAQVGNIQSFLKDFE---------------- 272

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                     G  +  +              +T    N   +   +   QK    ++L  
Sbjct: 273 ----------GAETVRLEQNYRSTPHILTAANTLIANNEGRMGKNLWTAQKEGEPISLYH 322

Query: 364 ADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAGIPL 421
           A NE +EA  +A  ++   ++  +    A++      +R ++    +  I   I  G   
Sbjct: 323 AFNELDEARFVAHQIKKWHEKGGQLKDCAILYRSNAQSRVLEEAFLQGNIPHRIYGGHRF 382

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                     + L  I   +D  +   ++  P                            
Sbjct: 383 FERQEIKDALAYLRLISNRHDDASFERVINTP-----------------------ARGIG 419

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              +  L+    DR  T      +   +  L+          ++ I            + 
Sbjct: 420 ERTLSVLRQAARDREKTLWETIQILLHEKILAGRAASGLRRFIELIDSLAYETSEMPLHL 479

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
            +         W        +        ++ NL                 +        
Sbjct: 480 QTDRVIKDSGLWL----MYQEEKGERAQGRIENLEELVNATQQYDYRQYEDD-------T 528

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                  ++  +             ++ ++    ++ L F  + + G+ E          
Sbjct: 529 LSPLQAFLSDAVLEAGEGQADASQDSVQMMTLHSAKGLEFFKIFIVGMEE---------G 579

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE----NNIPTIASRWLQ 717
            F S++  ++      E+ +        M    + L  + + R       +  I SR++ 
Sbjct: 580 MFPSKMALNESGRLEEERRLAYVGLTRAM----KELTLSYAERRRLYGEEVRNIPSRFID 635

Query: 718 RLL 720
            L 
Sbjct: 636 ELP 638


>gi|77462066|ref|YP_351570.1| UvrD/Rep family helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77386484|gb|ABA77669.1| Helicase, UvrD/Rep family [Rhodobacter sphaeroides 2.4.1]
          Length = 1106

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 78/876 (8%), Positives = 189/876 (21%), Gaps = 113/876 (12%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
             LA L  +                      +      LA  L  ++  +E        L 
Sbjct: 267  TLAGLEGVLLTGASAKEPYTAKLGSFPTKATRGALGPLADRLDALMRRVEAARPVRCCLL 326

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHL 222
            A +  +          F  +    +  R                        +       
Sbjct: 327  AAERARLIH------AFAGVFLPLYQARKAARGWLDFDDLIQRAKGLLTDPSVAQWVLFR 380

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNG--------AIVLPGLDCHIPTAIWNTI 274
            + G    I++  +  + P   +++  +A               +    D       +   
Sbjct: 381  LDGGIDHILVDEAQDTSPDQWKVIELLAQEFTSGRGAREVERTIFVVGDKKQSIYSFQGA 440

Query: 275  TEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               + +   +                  L        I R           +  G  +  
Sbjct: 441  DVAAFDRMRAEFGERLAGARRRLEELDLLHSFRSSPAILRLVDLTFDEPRRQALGGEVRH 500

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE-ADNEREEAISIAIALRMSLDE-- 384
                            +   + P  +  F  V L+    +    A  +A  +R  ++   
Sbjct: 501  IAFRGDMPGRAELWPLVEAAEEPEPENWFDPVDLVSDEHHAARLARQVATRIRAMIEAGV 560

Query: 385  ------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                              L+    ++   +        + I  +  + L   L    L++
Sbjct: 561  QIPHPGGFRPVAAGDFLILVQRRSDIFGEIIRACKEARLPIAGADRLKLGAELAVRDLSA 620

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            LL  +    D +++A +++ PL  +   E +        E    R   +          +
Sbjct: 621  LLAFLATPEDDLSLAAVLRSPLFGWSEGELFDLAHGR--EGYLWRRLYDREAAHPGTVAI 678

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            L  +  Q +         R          LL     +    +    +   +         
Sbjct: 679  LRDLRDQADFLRPFDLIERALTRHDGRRRLLARLGEEAEDGIDELLSQALAYERT----- 733

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                                   W + +   +             +  +  + ++    +
Sbjct: 734  -------------DVPSLTGFLTWLQTDEVEVKRQMEAAGGRIRVMTVHGSKGLEAPIVI 780

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            +     +   E+     + G                                   + +  
Sbjct: 781  LPDTADRKPRERDELFTLEGGARVW--------------------KTPAAESPPQIAAAR 820

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
              + A          +      +  +   +  +          +++ +   G +  D+  
Sbjct: 821  EARRARDAAENLRLLYVAMTRAQCWLIAAAAGKLETGGAWHDLIRQGMEAAGAERRDDGA 880

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                  L        +      +   P           +  E+        A        
Sbjct: 881  LVLDEGLWPPAAPQASAAAAAARPVLPGWAWAPATEPPAAPEVLSPSALGGAKAL----- 935

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                       +    G+  H ++  L              L+  + D            
Sbjct: 936  ---PGDAMPTEEALAHGSAVHRLLEHLPLHPPEGWEAAARGLLPDLPDVAP--------- 983

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
                       + + L  E   ++ +    + +     +      L+G  DR+ +     
Sbjct: 984  -------VLAEARAVLSAEHLAEALVPHALLEVAVTAEVAGR--RLSGTIDRLVVEPD-R 1033

Query: 913  VDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKA 946
            V   DYKT        E   + I  Q+   A AL  
Sbjct: 1034 VLAVDYKTNRVVPDRPEEVPEGILRQMGAYAEALAQ 1069


>gi|126172693|ref|YP_001048842.1| DNA-dependent helicase II [Shewanella baltica OS155]
 gi|217974967|ref|YP_002359718.1| DNA-dependent helicase II [Shewanella baltica OS223]
 gi|125995898|gb|ABN59973.1| ATP-dependent DNA helicase UvrD [Shewanella baltica OS155]
 gi|217500102|gb|ACK48295.1| DNA helicase II [Shewanella baltica OS223]
          Length = 722

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 75/690 (10%), Positives = 171/690 (24%), Gaps = 123/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+     T +A  E+R    ++ G     +  I +   +           +  L      
Sbjct: 56  SILAVTFTNKAAAEMRERVEKVAGTNMGRM-WIGTFHGLAHRLLRTHFQDA-GLPQSFQI 113

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +    ++ RLI      L    K   P           +                 +  +
Sbjct: 114 LDSDDQV-RLIKRILKSLNLDEKQYPPRQAQGYINGKKD-----------------QGLR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            + +           + L  + LKI  + + E                L+RA    L K 
Sbjct: 156 PKHI-------DAGGFPLEQNLLKI-YQVYQESCDRAGLVDFAEI---LLRAHELWLNKP 204

Query: 226 --------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                       I++     +       +  +A     A V+   D       W     +
Sbjct: 205 HLLAHYQDRFKHILVDEFQDTNAIQYAWIRVLAG--QTANVMIVGDDDQSIYGWRGAQVE 262

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           + +    +                               +  +              +  
Sbjct: 263 NLHRFLKDFP--------------------------TATTIRLEQNYRSKGNILKASNAL 296

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITAD 395
              N + +  ++   +     ++L  A NE +EA  I   +    ++       A++   
Sbjct: 297 IANNPERMGKELWTDEADGDPISLYCAFNEMDEARFIVGRINDWHEKGGNLSDCAILYRS 356

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L   G+   I  G+              L  I   +D  A   +V  P  
Sbjct: 357 NAQSRVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKDDDAAFERVVNTPPR 416

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G     + R+                                          S    +
Sbjct: 417 GIGDRTLDILRSTARQH------------------------------ELTLWQASVRLLD 446

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
           +K LA    + +   +  ++T + +              + +            +    +
Sbjct: 447 EKVLAGRAANSVRGFMDLIMTMREDTQDMVLYRMADTVIQASGLKAMYEAEKGEKAHARI 506

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              EE  T +  F    E     + N       ++              +  + ++    
Sbjct: 507 ENLEELVTAARTFEMPEELEDMGELNG-----FLSHAALEAGEGQADAFTDAVQLMTLHS 561

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + + G+ EG++P              S + L+  ++   +    +       
Sbjct: 562 AKGLEFTMVFMAGVEEGIFP--------------SKMALEEGDRLDEERRLCYVGMTRAM 607

Query: 696 H-LIYTRSLRE----NNIPTIASRWLQRLL 720
             L  T +              SR+++ + 
Sbjct: 608 EKLYITYAESRRIYGREDYARPSRFIKEIP 637


>gi|315221764|ref|ZP_07863678.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211]
 gi|315189150|gb|EFU22851.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211]
          Length = 1237

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 98/861 (11%), Positives = 225/861 (26%), Gaps = 120/861 (13%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGS 238
               F+K   + +  R  E NA          ++   E     H  +     +++     +
Sbjct: 376  LQRFMKAFVESYLNRKKEENAFEFADVSHFAIQILEEFPDVRHFYRNKYHEVMVDEYQDT 435

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS--- 295
                 R++  ++   NG       D       +     +  N       Y    Q     
Sbjct: 436  NHTQERMLELLS---NGHNRFMVGDIKQSIYRFRQADPQIFNDK--FKLYQDDSQQGKLI 490

Query: 296  -----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
                     ++ L+   +  KRL +        +         PD  +       E  I 
Sbjct: 491  VLKENFRSHVEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPDKKEPNPQYQTEFLIY 550

Query: 351  NIQKCF---SDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLE 405
            +         +   + + +  E A+ I   +R+  +E    +   L+TA R     +  E
Sbjct: 551  DGTLETNNEENDKDVSSVSAGEVALVIKEIIRLHNEENVQFEDITLLTASRTRNDMILAE 610

Query: 406  LTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
              ++GI +    G      ++   ++   L  I    +  A+  L+K P+  F   E   
Sbjct: 611  FAKYGIPVVSDGGEDNYLQSVEVMVMLDTLRTINNPLNDYALVALLKSPMFTFTEDE--- 667

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                       +    +     +L   + + ++    +  +         +  +  +L  
Sbjct: 668  --LARLALQKKVTEANHVVHQENLYEKLKNALSGHGQHPELITPPILKKIQQFQEILLDW 725

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
                +  +                 +               L            +     
Sbjct: 726  REFAKINSLYDLLWKIYQDRFYYDYVGALPNGAGRQANLYALTLRANDYEKMSFKGLSRF 785

Query: 585  SSLFSKIIE---------------TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
              +  KI+E                   +  +  + ++     +         + SS+  
Sbjct: 786  IGMIDKILETQNDLASVVVAAPKHAVRLMTVHKSKGLEFKYVFLLNTDKAFNRKDSSSAL 845

Query: 630  ILGTLESRLLNFDTLILGGLNEG--VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
            IL       + +   +   + +         + +       + +++L +  + +      
Sbjct: 846  ILSRQNGVGIKYVADVAVDVTDKLAPNHVRLSIDTLPYVQNEREIHLASISEQMRLLYVA 905

Query: 688  FEMANGTRHLI-----------------------------------------------YT 700
               A    +L+                                                T
Sbjct: 906  MTRAERKLYLVGKGRQESLEKKTFPAPENGRLAASIRRTMTSFQDWIWALQTVFKNDDLT 965

Query: 701  RSLRENNIPTIASRWLQRL-------LVLGGTDFFDNLKKRGQCYLDWTRKLD-YTTKQP 752
             S R      + S  + +L             +      +R    L+   +L+       
Sbjct: 966  FSTRFVTDSDLTSEKIGQLKLKERIVEENLAHNRQSEDIRRALDILENVDRLNTQYRAAI 1025

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
            H    +    ++        ++  +++      +  +          K        G+  
Sbjct: 1026 HLPSVRTPSQIKKFYEPVMDTDGVEIMEKKTPDFIGKTSFELPDFAKKAPVTGAQIGSAV 1085

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H ++  +   ++         ++K+I+     +E +   ID        KI+ SF E E 
Sbjct: 1086 HELMQRIPLNQLP-----TIAILKEILAQVQAEETVKKKID------LQKIA-SFFETEL 1133

Query: 873  KIQ--SSIEKIFVNIPAKM----AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
                    +K++   P  M            + G  D   LL    + + DYKT      
Sbjct: 1134 GQLLLKQADKVYREAPFAMLKQDQASGQNFVVRGILDG-YLLLDDRIVLFDYKTDQYTNP 1192

Query: 927  ETAQKLIDPQLSLEAAALKAG 947
                +    QLSL A AL+  
Sbjct: 1193 SELVERYQAQLSLYAEALRRS 1213


>gi|83814136|ref|YP_445923.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
 gi|83755530|gb|ABC43643.1| probable ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
          Length = 1114

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 97/930 (10%), Positives = 228/930 (24%), Gaps = 95/930 (10%)

Query: 56   AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115
            A   +R+E      ++   LP  +      +     D          V    +  EL  L
Sbjct: 192  AAAAVRAELDAWQARRPDALPEGR-----DDAMQAFDRAEKLIAQTGVETPAQRAELLEL 246

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
                 ++    +       P +      +A   A+ L D        +     L   +  
Sbjct: 247  FAGVADEESADVTLKCWRGPHT------DAYDWARTLRDEHLPALVRDVVQPALRRWRAY 300

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPI 230
             +         F++ A + +          +             +H      ++     +
Sbjct: 301  VH----EEVVAFVRPAVERFASLRQAEGRLTFHDLLACTRDLLRDHPGLRTTIQERHPRL 356

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAI-----------VLPGLDCHIPTAIWNTITEKST 279
            ++     + P  A L+  + +                 +    D       +     +  
Sbjct: 357  LVDEFQDTDPLQAELLFYLTSRNPTETTWTDCRPLPGSLFIVGDDKQSIYRFRRADMEVF 416

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDI--KREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                     +      L K    LD+     D        +            F P  T+
Sbjct: 417  EAVGERIEDTGGEAVMLTKNFRSLDVICDWCDAAFGALFDDADLMDRQATYTPFDPQRTT 476

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA--------------LRMSLD 383
            +     +    +  ++  +     I A +    A  I  A                 +  
Sbjct: 477  ERDVDGVRRINLDKVRGNWG--TDIAAQDAGRIARFIQGARDGGRSGRGADRHGALFAGG 534

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
             +     ++T  ++        L   GI   ++    L        L  LL    + +D 
Sbjct: 535  ADYSDFLILTRTKSRLSVYAEALAERGIPYTVTGSEDLGEAAELKALVDLLTCALRPDDE 594

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            +A    +K PL      + Y                +    +       L     Q+   
Sbjct: 595  VACVAYLKGPLVGASDDDLYRFSRAGGEF------GRMHEPVPASVLEALPHETAQRFEE 648

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
               H ++      ++   + ++ ++  +  L       ++  G+L      +        
Sbjct: 649  AFGHLRAARRRLHEQRPGVAIEQLIDDLGLLAGAAHPPDAAEGSLRAGRVLRTITYVQDL 708

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI--ITRLIDGETVKPK 621
                          +        +    +ETG       +       +   +        
Sbjct: 709  AAQGLGWAEVLDELQRVVDGEEEVDGMTLETGGDDAVRVMNVHQAKGLEAPVVFLADPYS 768

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 ++      E+  L    +   G  E V          +    +S    +   +  
Sbjct: 769  RSGGPSVRRHLRREAGELVAPIVQGSGYRERVTHPPLGWERPVDGRDESFRESEERHEAA 828

Query: 682  GQAAHDFEMANGTRHLIY--TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
             +    +  A   ++L+   T   + ++ P                              
Sbjct: 829  EERRLLYVAATRAQNLLVVSTYPEKPDDGPWAPLYPHLD--------------------A 868

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA--RRILKLDFIP 797
                +L     +P   RP+   P     R    ++++      Y   +            
Sbjct: 869  ADVPELGRPDAEPSSDRPEAPAPALTDQRAGRDAQLEAQSRPSYRTESVTDGDRASPVRS 928

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                +      G+  H ++ + ++    + TP  +  +   +      E+ P  +     
Sbjct: 929  SLASEGYGEAFGSAIHQLLEQCVRT--GRPTPWTDESVAASVLERTGAEDTPDAV----- 981

Query: 858  HLFHKISHSFLEHE-EKIQSSIEKIFVNIPAKMAIE-SIGIHLTGFADRIDLLKSGFVDI 915
                 +   FL+          ++++   P   A+     +   G  D +     G   +
Sbjct: 982  ERATTMVQRFLDSRVWGRVQGADRVYAEYPIAHAVRRETPVVRRGVID-LAWRADGRWTL 1040

Query: 916  TDYKT----GDNPKKETAQKLIDPQLSLEA 941
             D+KT    G  P+  +       QL   A
Sbjct: 1041 VDHKTDRVQGRPPETLSPDHAYVQQLQAYA 1070


>gi|229056867|ref|ZP_04196263.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH603]
 gi|228720395|gb|EEL71968.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH603]
          Length = 1166

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 95/893 (10%), Positives = 213/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLDGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GASYPEGEDVAAELLCIQQTEEEVQDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----HGKKGSFYEVMSLFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM----A 691
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 858

Query: 692  NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            +    ++                   ++ V+ G D       + +         D     
Sbjct: 859  HRDSEMLLELGQGNIPGEIYEYSASWKVEVVDGKDLLAPEPVQEEKQELLEALRDKKAVP 918

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 919  LESERKEEVYDRLMWEYGYADATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRAPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITIEVLQEQIARMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIHLTGFAD 903
                  K+   F     K   + + +   +P  M +                I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGKKGETILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|23016111|ref|ZP_00055871.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
            (contains helicase and exonuclease domains)
            [Magnetospirillum magnetotacticum MS-1]
          Length = 1154

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 94/919 (10%), Positives = 219/919 (23%), Gaps = 101/919 (10%)

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
             P +++  + +     +D   + ++   ++  +R  +L              I+      
Sbjct: 252  APALRAAVEAMLGGSDSDAKRAADMARFLAEPERRADLFEEWCAVFITDKGTIRKTLATK 311

Query: 135  PLSLPISPAN--AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
             +   +  A       A+ L  + + ++           L      +     A  ++   
Sbjct: 312  AVYKALPTAEPVLAAEAERLLRLTEKLKAARILEATQALLTLGGALLQSYRRAKSIRALM 371

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV--- 249
             Y    L   +  +  G     +     + + G    ++I  +  + P    ++  +   
Sbjct: 372  DYDDLILGARDLLAQPG-----VAPWVLYKLDGGIDHVLIDEAQDTNPDQWAVVEKLTEE 426

Query: 250  -----ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS--------- 295
                     +   V    D       +     +                           
Sbjct: 427  FFAGRGARESLRTVFAVGDAKQSIYSFQRADPREFERMRQAFAAHVPAAGGKWDVVDLNL 486

Query: 296  -LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
                    LD             + + G   +            +     +E +  +   
Sbjct: 487  SFRSAPSVLDAVNAVFAPGQPGRDGVAGDEDITHLPHRGGQAGRVEVWPAVEPRPTDEPP 546

Query: 355  CF-SDVALIEADNER-EEAISIAIALRMSLD-----------ENKKKSALITADRNLARR 401
             +   V  I  D+ R   A  +A  +R  +D                  L+         
Sbjct: 547  AWKPPVERIRGDSPRTRLARLVASRIRAMIDGEMLESKARPVRAGDVLVLVRRRGGFVED 606

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            +  EL    + +  +  + L+  +    L +L N +    D + +AT++K PL      +
Sbjct: 607  LVRELKSRKVEVAGADRMVLTEQMAVMDLMALGNFLLLPEDDLTLATVLKGPLVGLTEEQ 666

Query: 462  KYLSRAKNA----LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
             +           L     RG  +   + ++    L ++  Q ++       +R+     
Sbjct: 667  LFTLAHHRGEDVGLWEALRRGVAHEGGVFEMAFRQLSQLLAQADHVSPHTLYARVLGPLG 726

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                LL    L+    +  + +   +       S         L  +         +L  
Sbjct: 727  GRRNLLARLGLEAEDAIDEFMSLTLAFERAHPPS-----LQGFLHWLEAGALEIKRDLEQ 781

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                                               +   TV       + +  L      
Sbjct: 782  GG------------------------------RDAVRIMTVHGSKGLQAPIVFLPDTMQV 811

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
                  L+  G  E   P    +   +  V +     +   +        +         
Sbjct: 812  PTRSPRLLWLGEGEEELPAWPPRAEDMDAVCRRGAEARKLSREREYRRLLYVAMTRAEDR 871

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK-------KRGQCYLDWTRKLDYTTK 750
            +     R                 L  T    +               L          +
Sbjct: 872  LILCGWRGLKAAPETCWHALVQGALAATAAEFDDPFLVQAGETAEAPVLVLANAQTAPAE 931

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT--DR 808
                  P   P           +E + +   P A       +        +   +    R
Sbjct: 932  TGSAAGPGERPAAALPDWASLSAEPEPVPPRPLAPSRPEGDEPTVRSPLAEADGKPRWQR 991

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            G L H ++  + +    + +  +   + +              ++   +          L
Sbjct: 992  GKLIHRLLQTVPELPGPERSRAMLRFLGRPAW----------GLETAEQLAIANEVSDIL 1041

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KK 926
            +H              +P    I      ++G  DR+ + +S  V   DYKT   P    
Sbjct: 1042 DHPGLAGLFGPGSKAEVPLVGRIGDR--VVSGRVDRLVVSESEVVV-ADYKTNRRPPATP 1098

Query: 927  ETAQKLIDPQLSLEAAALK 945
            +    L   Q++    AL 
Sbjct: 1099 DEVPDLYVRQMAAYRLALA 1117


>gi|332184910|ref|ZP_08386659.1| uvrD/REP helicase family protein [Sphingomonas sp. S17]
 gi|332014634|gb|EGI56690.1| uvrD/REP helicase family protein [Sphingomonas sp. S17]
          Length = 765

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 81/732 (11%), Positives = 189/732 (25%), Gaps = 118/732 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+R     + G     +P + +   +  +                 
Sbjct: 66  SEILSVTFTNKAAREMRERVGRLVGDAVEGMPWLGTFHAIGAKM---------------- 109

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    L  +  ++  I        A+ L  +ID  + +  
Sbjct: 110 -LRRHAELVGLQSNFTILDTDDQLRLLKQLIVAADIDEKRFP--ARALGGLIDEWKNKGL 166

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
              D+ A + E+Y               + + ERL  +NA       + ++     H   
Sbjct: 167 VPADIDAGEAERYANGRGA------ELYRQYQERLRSVNACDFGDLLLHMLTILKTHRDV 220

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +       +  +A        +   D       W     ++ 
Sbjct: 221 LEHYQQRFRYIMVDEYQDTNSVQYLWLRLLAQARKNIACV--GDDDQSIYSWRGAQVENI 278

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      P   + +L          +     V     GR                
Sbjct: 279 LRFERDF-----PGAKVIRLEQNYRSTPHILGAASGVIANNGGR---------------- 317

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRN 397
                L   +         V ++   +  EEA  +   +  +     +    A++   ++
Sbjct: 318 -----LGKTLWTELDVGEKVRVLGVWDGPEEARRVGEEIEAARRSGTSYGDIAILVRAQH 372

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             R  +      G+   I  G             + L  + + +D +A   +V  P    
Sbjct: 373 QTREFEDRFIAIGLPYRIVGGFRFYERAEIRDALAYLRVVNQPSDDLAFERIVNVP---- 428

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                                R    K    +            
Sbjct: 429 ------------------------------------KRGLGDKALAKIHQLARADGLPLT 452

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             A  ++D          +             ++          Q +    +  +     
Sbjct: 453 LAAARILDTDELTPQARRSLGNLIGDIARWRDMARDLPHAELARQMLDESGYTAMYQAEK 512

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
             E        ++++      + +   +++ ++ ++D    +   ++   + I+    ++
Sbjct: 513 SAEAAGRLENLTELVRAMEDYE-SLGAFLEHVSLVMD----RDGDQREPEVTIMTIHAAK 567

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L FDT+ L G  EG++P   A +         +   ++ E+    A      A   + +
Sbjct: 568 GLEFDTVFLAGWEEGLFPSQRAID---------EGGTRSLEEERRLAYVAITRA-RRKAI 617

Query: 698 IYTRSLRENNIPT---IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
           I   + R         + SR++  L                    +W+   D        
Sbjct: 618 ILHAANRRIYGQWTSSLPSRFVGELPPEHIDSETSMTGGESLWRANWSEHADPFANVARG 677

Query: 755 KRPKPFPPLEAQ 766
               P     A 
Sbjct: 678 TGRGPGWQRAAA 689


>gi|86158934|ref|YP_465719.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775445|gb|ABC82282.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1192

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 96/864 (11%), Positives = 204/864 (23%), Gaps = 70/864 (8%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGST 236
               A  ++ A   +  R     A       +               ++G    +++    
Sbjct: 314  AELARLVEDAEARYAARKASARAVDFDDLLLRARDLLRADPGVRAELRGRLRALLVDEYQ 373

Query: 237  GSIPATARLMSTVANHPNGA--IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
               P    +   VA    G   +++   D       +                       
Sbjct: 374  DVNPVQQEVFELVAGPGGGPGPVLVAVGDLKQSIYRFRGADVAVFARLIRRLDAGEGRVL 433

Query: 295  SLAKLLDFLD--------IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
             L++              +     +            +       +P     +R    + 
Sbjct: 434  HLSENHRSAPAVLDLVNEVSARAFRPPPGAPPRDDELAFGEHDRLVPTRPDALRPACEVL 493

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--------KSALITADRNL 398
                            EA   R  A+    A     + +            A++      
Sbjct: 494  EDGAEGNAAERREREAEAIAARIGALVSGAAGAEIRERDGVTARRPRFGDVAILFRRLTQ 553

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
                +  L   G+   ++ G           L  LL A+   +D +A A L++ P     
Sbjct: 554  IAPYERALRAAGVPYRLARGGGFYQAPEVRDLGELLAAVADPSDAVAWAALLRSPACAVS 613

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                 L        L  L          +L + V    A                  D  
Sbjct: 614  DGALLLLARAGLARLPWLAPG-------ELAAEVDRVAAGADAAPAADSGPGASPLRDAA 666

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
               +  D   + +  L  Y+T  ++    + + +     V  L                 
Sbjct: 667  PRAIPADEWARLLRLLAAYRTL-HALRDRVPVGELCARAVEALDLDAALLAGPDGERRAV 725

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
               K L+       + G+  +  A                + ++E +  + +L   +++ 
Sbjct: 726  NLEKALALAARFGEDGGTPAELAAHLRAQAAR---PPREPEAELEAADAVALLSVHQAKG 782

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-- 696
            L +    +  L                  +   L     E ++  AA     A+  R   
Sbjct: 783  LEWPVAFVPDLGARARADLRRALLDREGRLCVALFDPAREAFVETAALASARADDRRSAA 842

Query: 697  --------LIYTRSL-----RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                    +  TR+                R L    +    D    +            
Sbjct: 843  AESRRLLYVALTRARDLLVLSGEGSGAETWRGLVEAGLAERPDLARRIPMAEVTAPGPAP 902

Query: 744  KLDYTTK---QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP--- 797
                            P   PP    P   + +E+ +    P      R+L +       
Sbjct: 903  AQLAPADGSPAAPLAPPPLAPPAPPSPVRAAVTELAEYARCPRRHLLGRVLGIPEPRGAP 962

Query: 798  ---HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                       T RGTL H ++     +      P           +    +   P +  
Sbjct: 963  GVPPGDDPGRATARGTLAHAML----AETDLGAPPLERRAQLAAAAARRGYDPASPGVRR 1018

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI----GIHLTGFADRIDL-LK 909
            I   +  + + S    E  + +   ++   +P  + +        ++L G  D +    +
Sbjct: 1019 ILLEVA-RFAESPGGRELALAARDGRLSREVPFLLRLGPGDGAPPVYLVGALDALVQERR 1077

Query: 910  SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969
             G + + DYK          +     QL     A            ++  L         
Sbjct: 1078 GGGLTVVDYKYATPRPGAAER--YRLQLLAYVLAAARAHPGARVRARLQFLRGDHRTVDV 1135

Query: 970  KIDCITNDKKKYSADELSEKSLKN 993
                   ++ +  A  L+ ++ + 
Sbjct: 1136 TPSARELERFEQDAPRLAAEARRG 1159


>gi|332559993|ref|ZP_08414315.1| UvrD-like DNA helicase [Rhodobacter sphaeroides WS8N]
 gi|332277705|gb|EGJ23020.1| UvrD-like DNA helicase [Rhodobacter sphaeroides WS8N]
          Length = 1106

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 88/876 (10%), Positives = 196/876 (22%), Gaps = 113/876 (12%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
             LA L  +                      +      LA  L  ++  +E        L 
Sbjct: 267  TLAGLEGVLLTGASAKEPYTAKLGSFPTKATRGALGPLADRLDALMRRVEAARPVRCCLL 326

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHL 222
            A +  +          F  +    +  R                        +       
Sbjct: 327  AAERARLIH------AFAGVFLPLYQARKASRGWLDFDDLIQRAKGLLTDPSVAQWVLFR 380

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNG--------AIVLPGLDCHIPTAIWNTI 274
            + G    I++  +  + P   +++  +A               +    D       +   
Sbjct: 381  LDGGIDHILVDEAQDTSPDQWKVIELLAQEFTSGRGAREVERTIFVVGDKKQSIYSFQGA 440

Query: 275  TEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               + +   +                  L        I R           +  G  +  
Sbjct: 441  DVAAFDRMRAEFGERLAGARRRLEELDLLHSFRSSPAILRLVDLTFDEPRRQALGGEVRH 500

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE-ADNEREEAISIAIALRMSLDE-- 384
                            +   + P  +  F  V L+    +    A  +A  +R  ++   
Sbjct: 501  IAFRGDMPGRAELWPLVEAAEEPEPENWFDPVDLVSDEHHAARLARQVATRIRAMIEAGV 560

Query: 385  ------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                              L+    ++   +        + I  +  + L   L    L++
Sbjct: 561  QIPQPGGFRPVAAGDFLILVQRRSDIFGEIIRACKEARLPIAGADRLKLGAELAVRDLSA 620

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            LL  +    D +++A +++ PL  +   E +        E    R   +          +
Sbjct: 621  LLAFLATPEDDLSLAAVLRSPLFGWSEGELFDLAHGR--EGYLWRRLYDREAAHPGTVAI 678

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            L  +  Q +         R          LL     +    +    +   +         
Sbjct: 679  LRDLRDQADFLRPFDLIERALTRHDGRRRLLARLGEEAEDGIDELLSQALAYERT----- 733

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                                   W + +   +             +  +  + ++    +
Sbjct: 734  -------------DVPSLTGFLTWLQTDEVEVKRQMEAAGGRIRVMTVHGSKGLEAPIVI 780

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            +     +   E+     + G           +      E       A+    +R    +L
Sbjct: 781  LPDTADRKPRERDELFTLEGGA--------RVWKTPAAESPPQIAAAREARRARDAAENL 832

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             L               +A          +         A   L R  +          +
Sbjct: 833  RL-------------LYVAMTRAQCWLIAAAAGKLETGGAWHDLIRQGMEAAGA---ERR 876

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
              G   LD         +                    +       +  P A+   + L 
Sbjct: 877  DDGALVLDEGLWPPAAPQASAAAAAARPVLPAWALAPAAEPPAAPEVLSPSALGGAKALP 936

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
             D +P  +        G+  H ++  L              L+  + D            
Sbjct: 937  GDAMPTEE----ALAHGSAVHRLLEHLPLHPPEGWEAAARGLLPDLPDVAP--------- 983

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
                       + + L  E   ++ +    + +     +      L+G  DR+ +     
Sbjct: 984  -------VLAEARAVLSAEHLAEALVPHALLEVAVTAEVAGR--RLSGTIDRLVVEPD-R 1033

Query: 913  VDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
            V   DYKT      + E   + I  Q+   A AL  
Sbjct: 1034 VLAVDYKTNRVVPDRPEEVPEGILRQMGAYAEALAQ 1069


>gi|158340371|ref|YP_001521727.1| endonuclease [Acaryochloris marina MBIC11017]
 gi|158310612|gb|ABW32226.1| RecB family exonuclease, putative [Acaryochloris marina MBIC11017]
          Length = 262

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 71/233 (30%), Gaps = 24/233 (10%)

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
              S +++      P A   R    L     F         G   H  + ++ K      
Sbjct: 3   YPLSATKLITYQQCPKAYNFRYERGLSSPSAF----GSPAFGIALHKTLADIYKDWNYGY 58

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN--I 885
                        +H  +    P                ++    +I+   + + V   I
Sbjct: 59  PLPSLDWFAVCWQAHTGELK--PAQIHEGWMALQIYYEKYVAPLPQIR---KPLGVEGKI 113

Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN--PKKETAQKLIDPQLSLEAAA 943
            A   + +I   +TG  DR+D   +G +++ DYKT     P        ID QL L    
Sbjct: 114 KASFQVNNIEFSITGRYDRLDYTDNG-LELIDYKTSKTIGPS-----DGIDLQLGLYFLI 167

Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
           L+          +  +L Y+R  QK   D   +  ++    EL       L  
Sbjct: 168 LEQIYPE---ALETLSLIYLRQGQKVTFDVTPDHHQQVR--ELIGDIAVKLRA 215


>gi|91776104|ref|YP_545860.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylobacillus
            flagellatus KT]
 gi|91710091|gb|ABE50019.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylobacillus
            flagellatus KT]
          Length = 1129

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 87/833 (10%), Positives = 214/833 (25%), Gaps = 77/833 (9%)

Query: 151  NLADIIDIIETEEKKWEDLHALKNEKYGMWWL---LAADFLKIASKYWTERLVELNASSP 207
             +   +      E   + L +L   +    W      A  LK+A         +      
Sbjct: 320  EIVATLQQTAGAEATLQRLRSLPVRQDEHSWQMVAALAQLLKLAVAQLWLVFQQAGEVDF 379

Query: 208  VGYQIALMRAEAEHLMKGTK---------GPIIIAGSTGSIPATARLMSTV---ANHPNG 255
            V      + A  +     ++           +++     + P   +L+  +       +G
Sbjct: 380  VEVSQRALLALGDDDDAPSELAMKLDYEISHLLVDEFQDTSPGQVKLLQRLTQGWMPGDG 439

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS--------THPQYSLAKLLDFLDIKR 307
              +    D       +           + +   +             S   ++D+++   
Sbjct: 440  RTLFAVGDPMQSIYRFRKANVGLFLEVAEDGIGALKLERLQLCRNNRSAPPVVDWINATF 499

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
              V    +   +   R      +      +D+         I +  +    + + EA   
Sbjct: 500  RHVFPAHDSVVQGAIRYREFVATRENEAGADVMVH----PLIAHPDEGADALRIREAGT- 554

Query: 368  REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI--PLSTTL 425
                  + I         + + A++   R     +  E+ R   ++   A    PL+   
Sbjct: 555  -----VVGIIRHTWASRPEARIAVLVRARAHLETLVAEIRRHHPDLHFQAVEIEPLAGRQ 609

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                L +L +A+ +  D +    +++ P       + ++   ++       R       +
Sbjct: 610  SVQDLLALTHALLQRADRVNWLAVLRAPWCGLRLADLHVLAGRD-------RYRTIWSLL 662

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
             D   L       ++ + HV    S +  +   + +         +              
Sbjct: 663  HDNALLAGMSEDGRRRSQHVVQVLSEILGQQGRMPLSRWLESAWLMLGGAQCLWQPGDVA 722

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
               +            +       +++  L+   + +    L    I     ++ +    
Sbjct: 723  DVEAFFALVDQLDQQGRFSLERLVQEVEKLYAAPDLEANGQLQFMTIHKSKGLEFD---- 778

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                T ++ G   +P+  +   L      E   ++ +  +   L    +    A      
Sbjct: 779  ----TVILPGLERRPRNGEMPLL----LWEEVAIDTEAGVTTELVTAPFIPKGAAGRDEP 830

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGG 724
                    L+        A   +  A      L    S+  N    +       L +L  
Sbjct: 831  SPYSYLKMLEKERADHESARVLYVAATRAERCLHLLGSVVPNAKGELRPSGGTFLDLLWP 890

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                  ++   Q  L                +P        +      +++  + ND   
Sbjct: 891  HLAGRFMEAAAQHVL----------PAEDASQPPLLADFVPKLVRVEEADMPSIYNDDRH 940

Query: 785  VYARRILKLDFIPHFKKDPD-RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
                        P   +        GTL H  +  +               ++  +    
Sbjct: 941  EVVSYEQAPADTPVLGRQAGLEAHIGTLAHKYVEMISADPDFDGWLARLPSLRPAMVRWL 1000

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAKMAIESIGIHLTGF 901
             ++               ++    L+  +     S+  +    +     +   G      
Sbjct: 1001 ARQGHHQDAAQEAAGQVLQLLALTLQSPDGRWVLSARPQAAAELAL-GHVGDAGFKQH-V 1058

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLID------PQLSLEAAALKAGS 948
             DR  + ++G   I DYK+   P    AQ ++D       QL+  AA      
Sbjct: 1059 VDRCFI-ENGERWIIDYKSTRLPVNADAQIMLDAASVHAAQLTGYAALFAEEG 1110


>gi|325972063|ref|YP_004248254.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
 gi|324027301|gb|ADY14060.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
          Length = 1104

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 75/827 (9%), Positives = 195/827 (23%), Gaps = 103/827 (12%)

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPII 231
                      F++     + ++  +    +        +          H  K     I+
Sbjct: 297  GSSQLQAVLSFMQEYIASYQKQKRQSGVLTFADISSLAVDILSSNKSLRHYYKMAYKYIM 356

Query: 232  IAGSTGSIPATARLM----STVANHPNGAI---------VLPGLDCHIPTAIWNTITEKS 278
            I     +     +L+      +    +G           +    D       +       
Sbjct: 357  IDEFQDNNEQQKQLLYLLSERLDREGDGIPGPENLKADKLFFVGDEKQSIYRFRGSDVSV 416

Query: 279  TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT-- 336
                S     +        +L      +   ++    +   +   +    ++        
Sbjct: 417  FKRLSWELCANGG---RHIQLDTNYRSEPALIQWFNTLFPSVMQNNGESFEADFSALGWR 473

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS--------------L 382
                        +    +   D    +A +   EA ++A  +                  
Sbjct: 474  EPSEGIQSKCTVLIKPYESKLDEDEEDAADTDAEAYAVASLIDEMLHTDSYLIPSETGPH 533

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                   AL+    +     +  L RF I   + A   L     ++ + ++L  +    D
Sbjct: 534  RPATSDIALLLRTTSSQLSFEKALRRFNIPYTVQAARSLMLEAPANDMYAMLQLVLYPQD 593

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              A  T+++ P                   +    G ++   +  + +            
Sbjct: 594  RHAYMTVLRSPFCNLSDFGMTEVLDCPCFSIPDSIGPEDRSRLEAVGAFYAHLKKASATA 653

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
            +          E    L+             LV   + +  T     +    ++     +
Sbjct: 654  SLSSLVSLLWYESGYYLS-------------LVATPSYQVYTEHYAFLHRLAQMQQQQGK 700

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
            ++         NL   E+ + L     +  E    +  +  + ++    ++     K + 
Sbjct: 701  SLSQFVDFLRDNLAQNEKIENLEV-IKEQEEGVQILSIHKSKGLEFPIVVVANTGSKGRS 759

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
            E+ +     G      ++        ++E            L +  ++ LN         
Sbjct: 760  EEDAVSTYQGISIPHYVSVPY----HVSETRIETAKHAGQLLDKGTEAQLNR------AE 809

Query: 683  QAAHDFEMANGTR-HLIYTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNLKKRG-Q 736
                 +      + H++ +       R       +S  L  L    G D      ++G  
Sbjct: 810  LKRLLYVALTRAQTHVVVSGCFSKTNRSLAEDGRSSTLLLMLAQSLGIDIDAPALEQGIV 869

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA--------- 787
                     +        +  + F        ++     +     P              
Sbjct: 870  TVRSIADIAESLLYDQKREDEQAFEQRIDAAASFYAPREEAYEMRPIRYAVTALHAPLFS 929

Query: 788  --RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
               + L          +    D GT  H +  +++ +       +    +          
Sbjct: 930  ETAKALPSLASDALFSEAQVADFGTFVHALCEQMVLQ-----PSQAIDAL---------A 975

Query: 846  ENLPPHIDIIWRHLFHKIS---HSFLEHEEKI-QSSIEKIFVNIPAK--MAIESIGIHLT 899
               P    +  + +        H+F+       +     +   +     M  E   + + 
Sbjct: 976  MLPPSLGGVNQQQVIADALFLCHAFVGSSWYRTEVQPYPVSCEVGFFSLMEHEGRAVVVE 1035

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            G  D +   K     + D+KT         +     QL     A+  
Sbjct: 1036 GSVDLLIKRKD-HYLVVDFKTDR---FRDEEVHR-FQLQTYMQAMAR 1077


>gi|197121750|ref|YP_002133701.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196171599|gb|ACG72572.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 1195

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 91/871 (10%), Positives = 195/871 (22%), Gaps = 72/871 (8%)

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIII 232
                   A  ++ A   +  R     A       +               ++G    +++
Sbjct: 309  APQQAELARLVEDAEARYAARKASARAVDFDDLLLRARDLLRADPGVRTELRGRLRALLV 368

Query: 233  AGSTGSIPATARLMSTVANHPNGA---IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
                   P    +   VA    GA   +++   D       +                  
Sbjct: 369  DEYQDVNPVQQEVFELVAGPDGGAAGPVLVAVGDLKQSIYRFRGADVAVFARLIRRLGAG 428

Query: 290  THPQYSLAKLLDFLD--------IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                  L++              +     +            +       +P     +R 
Sbjct: 429  QGRVLHLSENHRSAPAVLDLVNEVSARAFRPPPGAPPRDDELAFGEHDRLVPTRPEALRP 488

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--------KSALIT 393
               +                 EA   R  A+    A     + +            A++ 
Sbjct: 489  ACEVLEDGAEGNAAERREREAEAIAARIRALVSGAAGVEVRERDGVTARRPRFGDVAILF 548

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                     +  L   GI   ++ G           L  LL A+   +D +A A L++ P
Sbjct: 549  RRLTQIAPYERALRAAGIPYRLARGGGFYQAPEVRDLGELLAALADPSDAVAWAALLRSP 608

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                      L             G        +L + V    A  +            S
Sbjct: 609  ACAVSDGSLVLLARAGL-------GRLAWLAPAELAAEVDRAAAGAQAGEDAAAAGPGAS 661

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                     +       +  L+      ++    + + +     V  L            
Sbjct: 662  PPADVAPRAIPADEWARLLRLLAAHRTLHALRDRVPVGELLARAVEALDLDAALLAGPDG 721

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                    K L+       + G+  +  A                + ++E +  + +L  
Sbjct: 722  ERRAVNLEKALALAARFGEDGGTPAELAAHLRAQAAR---PPREPEAELEAADAVSLLSV 778

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA-------- 685
             +++ L +    +  L                  +   L     E ++  AA        
Sbjct: 779  HQAKGLEWPVAFVPDLGARARADLRRALLDRDGRLCVALFDPAREAFVETAALARARDDD 838

Query: 686  ----------HDFEMANGTRHLIYTRSLRENNIPTIAS--RWLQRLLVLGGTDFFDNLKK 733
                        +      R L+                   L     L           
Sbjct: 839  RRSAAAESRRLLYVALTRARDLLVLSGEGSGAETWRGMVEAGLAERPDLARRIPVAEDVA 898

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                           +       P   PP        + +E+ +    P      R+L +
Sbjct: 899  AAMADAPPAPARAAASTAEPLAPPPLAPPAPPAATRAAVTELAEYARCPRRHLLGRVLGI 958

Query: 794  DFIP------HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                              T RGTL H ++     +      P           +    + 
Sbjct: 959  PEPRGAPGVPPGDDPGRATARGTLAHAML----AETDLGAPPLERRAQLAAAAARRGYDP 1014

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG----IHLTGFAD 903
              P +  I   +  + + S    E  + +   ++   +P  + +        ++L G  D
Sbjct: 1015 ASPGVRRILLEVA-RFAESPGGRELALAAREGRLLREVPFLLRLGPGDGAPAVYLVGALD 1073

Query: 904  RIDL-LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
             +    + G + + DYK          +     QL     A            ++  L  
Sbjct: 1074 ALVQERRGGGLTVVDYKYATPRAGAAER--YRLQLLAYVLAAARAHPGARVRARLQFLRG 1131

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
                          ++ +  A  L+ ++ K 
Sbjct: 1132 DHRAVDVTPSARELERFEQDAPRLAAEARKG 1162


>gi|302336244|ref|YP_003801451.1| UvrD/REP helicase [Olsenella uli DSM 7084]
 gi|301320084|gb|ADK68571.1| UvrD/REP helicase [Olsenella uli DSM 7084]
          Length = 879

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 74/676 (10%), Positives = 170/676 (25%), Gaps = 84/676 (12%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T +A  E+R     +    +  +  + +   +       D  L          
Sbjct: 87  QVLAITFTNKAAAEMRERLGALLPGGTRGM-WVCTFHAMCVRMLREDGELLGYQP----- 140

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                        +     D  + L       L I P       +++   I   +     
Sbjct: 141 ------------NFTIYDDDDSRRLVKSIMADLDIDPKQCPL--QSIRARISAAKNALVG 186

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E++ A                          RL   NA       +      ++H    
Sbjct: 187 PEEMQAHAQTPLDRAAAR-------VYHSLEGRLARANAMDFDDLLVKAFDLLSKHPEVL 239

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I +     +      + + +A      +V+   D       W      +  
Sbjct: 240 DGYQERFRQISVDEYQDTNGVQYAITNLLAKKHQNLMVV--GDDDQSIYSWRGADIANIL 297

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL                                   +     
Sbjct: 298 SFRK-----DYPDAVVVKL---------------------EQNYRSFGHILNAANAVVRN 331

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNL 398
           N    E ++   +     V L +A +ER+E   I   +    D   +    A+       
Sbjct: 332 NARREEKRLFTDRGDGERVELFQAADERDEGRWIGSEIEKLHDGGTSYDDIAVFYRTNAQ 391

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++    R G+   I  G           +T+ L A+   +D +++  ++  P    G
Sbjct: 392 SRILEDMFLRAGVPYKIVGGTRFFDRAEIRDVTAYLKAVVNPDDDVSVLRVINTPRRGIG 451

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                  +A  A E      +     + +   L         + T           E  +
Sbjct: 452 TTSIRKVQAYAA-EYGISVFSAAQACVAETGLLSARVRGALGDFTSTIEAARHFGGELAD 510

Query: 519 LAVLLVDH--ILQCITPLVTYKTNKNST-------------CGNLSISDWTKLTVTCLQN 563
           +   +VD   +++ +    + + +                   +   ++  +        
Sbjct: 511 VVEAIVDRAGLVRALEAEKSVEADGRIENIREFLSVAQEFDETHDDAAETLESLRQLRAA 570

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI------KANAIEWIDIITRLIDGET 617
             LD+   L        G   +         G+           A +    +  L     
Sbjct: 571 GALDDAAALGPASVAPVGAHAAGAGVPATAAGTPGSGGALPDVAAEKLPAFMEWLALRSD 630

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
           +     ++S + ++    ++ L F  + + G+ EG++P    ++   S   +  L     
Sbjct: 631 LDALSGQTSAITMMTVHAAKGLEFPVVFVAGMEEGIFPHRGHEDEPSSVEEERRLAYVAI 690

Query: 678 EKYIGQAAHDFEMANG 693
            +   +    +     
Sbjct: 691 TRAERKLYLTYAATRR 706


>gi|257790705|ref|YP_003181311.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
 gi|257474602|gb|ACV54922.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
          Length = 813

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 77/711 (10%), Positives = 171/711 (24%), Gaps = 108/711 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     + G +   +  + +   +      +D             
Sbjct: 54  EILAITFTNKAAAEMRERLNGLVGPRCRGM-WVSTFHSMCVRMLRSDAEKL--------G 104

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET---E 162
             R   +            D  K LY E    L I P      A     +++ I T   E
Sbjct: 105 FTRNFTIYD---------TDDQKRLYKEIMAELDIDPKRFPVNA-----LMNRISTAKNE 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RA 217
                       +                     ERL   NA       +          
Sbjct: 151 LVVPSAFEKEAGD-------PVGKVASRVYSRLQERLKAANAFDFDDLLLYAYLLLKNHE 203

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           +     +     I++     +  A   +   +A      +V+   D       W     +
Sbjct: 204 DVRSAYQQRFRYIMVDEYQDTNHAQYSITGLLAEGHKNIMVV--GDDDQSIYSWRGADLR 261

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +                               + ++      +       +  
Sbjct: 262 NILEFEQDYP--------------------------TAHTVKLEQNYRSVGNVLAAANAV 295

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR--MSLDENKKKSALITAD 395
              N      K+    +    + +  A +ER+E   IA  +    +   +  + A+    
Sbjct: 296 IANNQHRKAKKLFTSAEDGDKIQVYMAADERDEGRWIAGEIEKQRAAGLSYNQVAVFYRT 355

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L R G+   I  G           + + L  +    D +A   ++  P  
Sbjct: 356 NAQSRMLEDMLLRAGVPYRIVGGTRFFDRAEIRDVMAYLTLVVNPADDIAAKRVINVPRR 415

Query: 456 KFGFPEKYLSR-AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN------------ 502
             G             + +  + G + +    +L++     I                  
Sbjct: 416 GIGKTTIERIEQFAREMGMTFMEGAELAIVDPELRASARQAIGEFVGLVNEARTYGGDLR 475

Query: 503 ------THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                          L  E+ + A   +++I + +  +  +                   
Sbjct: 476 KVIETIIDKSGLIGALQAENTDEARGRIENIQEFLGVVDEFTETHEDEDALYEAPTAEPA 535

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L  V         + +       L++      E             D I  +    
Sbjct: 536 DAPALAPVPSSADALAGSFYAFAGANELAAP----AEESPVRVLRGDSLADFIEWVRLRT 591

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +    E    + ++    S+ L FD + + G+ E ++P   +         +  L    
Sbjct: 592 DLDTVAEDGHAVTMMTVHSSKGLEFDCVFVAGMEETLFPHMNSVGDAAGIEEERRLA--- 648

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE----NNIPTIASRWLQRLLVLG 723
                        +    + L  T +              SR++Q +    
Sbjct: 649 ----------YVAITRARKKLFLTCAYARQIFGQTSSNPISRFIQEIPSEL 689


>gi|326329757|ref|ZP_08196078.1| RecB family exonuclease [Nocardioidaceae bacterium Broad-1]
 gi|325952522|gb|EGD44541.1| RecB family exonuclease [Nocardioidaceae bacterium Broad-1]
          Length = 293

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 78/256 (30%), Gaps = 23/256 (8%)

Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                             + S S      + P     R I +L          +   RGT
Sbjct: 3   TSPADARSTPVDGINVLGSLSPSRASDFTSCPLLYRFRTIDQLPEP-----PSEAAARGT 57

Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP---------PHIDIIWRHLFH 861
           + H ++ +L      + TP     M +         +              +  W     
Sbjct: 58  VVHKVLEDLFDLPAPERTPRQARSMVEQAWEDVRSLDPALATLFTTAADEEEAAWLESCR 117

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
           ++   + + E+  +  +E        +  ++S  + L GF DR+D+   G + + DYKT 
Sbjct: 118 QVLRRYFDLEDPRR--LEPAEREHYVEALLDSK-LLLRGFIDRVDIAADGRIRVVDYKTS 174

Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
             P +    K +  QL   A  +             A L  I L     +  + ++    
Sbjct: 175 RIPSETYEAKAL-FQLRFYALVIWR-----TRGVVPAMLQLIYLGSGDILRYVPDEADLL 228

Query: 982 SADELSEKSLKNLIEI 997
           + +  +E   + +   
Sbjct: 229 ATERKAEAIWRAIRTA 244


>gi|296169707|ref|ZP_06851325.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895704|gb|EFG75400.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 777

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 76/714 (10%), Positives = 182/714 (25%), Gaps = 71/714 (9%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R   + + G ++  +  + +              L       + 
Sbjct: 66  GQILAITFTNKAAAEMRERVVRLVGNRARAM-WVSTFHSTCVRILRNQAAL-------IE 117

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            +     +       R  L  I +D+  +     P            LA+ I  ++ E  
Sbjct: 118 GLNSNFSIYDADDS-RRLLQMIGRDMGLDIKRYSPRL----------LANAISNLKNELI 166

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTE--RLVELNASSPVGYQIALMRAEAEHL 222
              +  A   +         A       +       L   +        +      A+H 
Sbjct: 167 DPAEAVAKLTDDSDDLARTVASVYGEYQRRLRAANALDFDDLIGETVAVLRAFPQIAQHY 226

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +     +++     +  A   L+  +     G  V    D   P  +        +   
Sbjct: 227 RR-RFRHVLVDEYQDTNHAQYVLVRELV----GHDVTESGDDVPPAELCVVGDADQSIYA 281

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
               T                 I+  +       +  +              ++   RN+
Sbjct: 282 FRGATIRN--------------IEDFERDYPDATTILLEQNYRSTQNILSAANSVIARNS 327

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITADRNLA 399
              E ++         +    ADNE +EA  +A    AL    +      A+     N +
Sbjct: 328 GRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALADRGEITYNDVAVFYRTNNSS 387

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           R  +    R GI   +  G+          + + L  +    D +++  ++  P    G 
Sbjct: 388 RSFEEVFIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSMRRILNTPRRGIGD 447

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
             +                                  A            +  +E+    
Sbjct: 448 RAEACVAVYAENTG------------------ASFADALVAAAEGKVPMLNSRAEKAIAG 489

Query: 520 AVLLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            V L+D +   +   L     +     G     + +       +   L+E   + + +  
Sbjct: 490 FVELLDELRGRLDEDLGDLVESVLERTGYRRELESSTDPQDLARLDNLNELVSVAHEFST 549

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           +     +   S        +    +    +    +  ++ +   + +  + ++    ++ 
Sbjct: 550 DRANAAALDESLQAPDDEDVPDTGVLAEFLERVSLVSDSDEIPDDGAGMVTLMTLHTAKG 609

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F  + + G  +G++P   A +    R +  +  L        +       A       
Sbjct: 610 LEFPVVFVTGWEDGMFPHMRALDD--PRELSEERRLAYVGITRARQRLYLSRA------- 660

Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             RS     +    SR+L+ +                   +    +       P
Sbjct: 661 IVRSSWGQPMLNPESRFLREIPQELIEWRRTAPAPSFSAPVSGAGRFGAPRAAP 714


>gi|307544077|ref|YP_003896556.1| exodeoxyribonuclease V, subunit gamma [Halomonas elongata DSM 2581]
 gi|307216101|emb|CBV41371.1| exodeoxyribonuclease V, gamma subunit [Halomonas elongata DSM 2581]
          Length = 1238

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 89/800 (11%), Positives = 204/800 (25%), Gaps = 75/800 (9%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII-KSLGDV 84
           L    V   R  PL P  L   TI V +    Q L+        + S +   +  +L   
Sbjct: 24  LRDLAVTWMRSHPLTP--LEDETILVQSNGISQWLKLALAADAPQGSGVAAALDVTLPAR 81

Query: 85  VEEKFTADLLLSYN---LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
              +    +L+  +     PP S + +   + RL+ +    L D +        L+    
Sbjct: 82  FLWQAYRSVLVHRDGEGAVPPESPLDKPRLIWRLMRLLPALLDDPLFAPLSRF-LADDDD 140

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---GMWWLLAADFLKIASKYWTER 198
                 LA+ LAD+ D  +     W    A   ++            +  +     W   
Sbjct: 141 LRKRHQLAERLADLFDQYQVYRADWLAAWAEGRDELIDARGQARPLDEDQRWQPALWRYL 200

Query: 199 LVELNASSPVGYQIALMRAEAEH--------LMKGTKGPIIIAGSTGSIPATARLMSTVA 250
             ++ A+     +  +     E            G    +++ G +     T   ++ +A
Sbjct: 201 RDDIGAAGLATSRALVHSRFLEACKELTPETRPPGLPRRVMVFGISSLPRQTLEALAAIA 260

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTIT--------EKSTNITSSNTTYSTHPQYSLAKLLDF 302
                 + +     H    I             ++           +    ++   L  +
Sbjct: 261 RVSQVILCVHNPCRHYWADIIEHKDLLRAARKRQQRRPGMPIELDDTQLHLHAQPLLAAW 320

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFL---------------------PPDTSDMRN 341
               R+ ++ L    ++   R+   ++S                                
Sbjct: 321 GKQGRDYLRLLDEFDDQESYRARFEAESLRIDLFESPLERCDAPGLLQQLQDDILELRPP 380

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397
           ++  +       +  + +    A +   E   +   L  + D +     +   ++  D +
Sbjct: 381 SESRDTWPAVDPERDTSLRFHVAHSALREVEILHDQLLAAFDADPSLKPRDILVMVPDID 440

Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
                   +           I   +S             L +LL+          +  L+
Sbjct: 441 TYTAAVQAVFGRLAPDDPRHIPFTLSDQTSRHRQPLLIALEALLHLPESRLSVGELLDLL 500

Query: 451 KHPLAKFG--FPEKYLSRAKNALELVALRGNKNSYDIMDLK---------SLVLDRIATQ 499
           + P  +       + L   +  +E   +R   ++     L               R    
Sbjct: 501 EVPALRQRFGLDAEALPVLRRWIEGAGIRWGLSADQRARLDLPDGLTANTWAFGLRRLLL 560

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLTV 558
                          E       L   +   +   L T  T          ++ W +   
Sbjct: 561 GYAVGDNADGPWHGIEPFGDIGGLEAALAGPLVDLLDTLDTLWRRLSEPADVATWCQRLR 620

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
             L +          +L      + L   +    E     +   +  +            
Sbjct: 621 ELLADCFSAADE--ADLSTLTRLEELLDEWRDTTEDAGLEEPLPLSVVREHWLGQIDGNN 678

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
             +   +  + I   +  R + F  + L G+N+G +P+                  ++  
Sbjct: 679 LSQRFLAGAVNIATLMPMRAIPFRHVCLLGMNDGDYPRTQRPLDIDLMGHDYRPGDRSRR 738

Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
           +          + +    L+ +   R   +N     S  L +L       +        +
Sbjct: 739 EDDRYL-FLEALLSARERLMISWVGRSIHDNALQPPSVLLGQLRDHLAGGWRLAGHAADE 797

Query: 737 CYLDWTRKLDYTTKQPHYKR 756
                   LD  T +   + 
Sbjct: 798 QDDGGQALLDALTTEHPLQP 817


>gi|15599481|ref|NP_252975.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa PAO1]
 gi|9950505|gb|AAG07673.1|AE004844_5 exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa PAO1]
          Length = 1171

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 96/866 (11%), Positives = 227/866 (26%), Gaps = 68/866 (7%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L    V   R  PL PL    V ++  +    Q L+    E   +       I +  +V 
Sbjct: 25  LRDLAVSWMRRYPLAPLESERVLVH--SNGIAQWLKLALAEDPREDGGGGGGIAAALEVQ 82

Query: 86  ----EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                       +L     P VS + +     RL+ +    L            L+    
Sbjct: 83  LPAQFLWQAYRAVLGRESIPEVSELDKAPLTWRLMRLLPGLLERPEFRTLQRF-LADDAD 141

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLAADFLKIASKYWTER 198
                 LA+ LAD+ D  +     W D  +   ++               +  ++ W   
Sbjct: 142 LRKRHQLAERLADLFDQYQVYRGDWLDDWSQGRDQLRTANGQARPLGADERWQAELWRAL 201

Query: 199 LVELNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANH 252
           L ++ A S    +  + R   E L       +     +++ G +     T   ++ +A  
Sbjct: 202 LADVGADSLARSRSGVHRRFIEALRSASAAPRALPRRVVVFGISSMPAQTLEALAALARF 261

Query: 253 PNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
               + +     H    I             ++      ++       Q++   L  +  
Sbjct: 262 SQVLLCVHNPCRHHWADIVADKDLLRHEYRRQQRRAGVPADLDEDRQHQHAQPLLAAWGK 321

Query: 305 IKREDVKRLGNVSNEMYGRS------------------MVISKSFLPPDTSDMRNTDILE 346
             R+ +  L +  +    R+                    +               +  E
Sbjct: 322 QGRDYINLLDSYDDPDSYRNLFGEVNGGRIDLFSEETPHGLLGQLQDDILELRPLAETRE 381

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRV 402
           +  P   +  + +    A + + E   +   L    + +     +   ++  D N     
Sbjct: 382 HWPPVAPRSDASIRFHVAHSAQREVEILHDQLLARFNADPSLKPRDVIVMVPDINAYAPH 441

Query: 403 KLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +        +  I   ++             L  LL           I  L+  P  
Sbjct: 442 IEAVFGQVPRDDQRFIPYTLADQGQRGREPLLIALEHLLKLPDSRFAVSEILDLLDVPAL 501

Query: 456 KFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVP 506
           +  F   E  L+     +E   +R   ++     L        +     +        V 
Sbjct: 502 RRRFGVDEADLATLHRWIEGAGVRWGLDAAQRERLGLPAGLEGNSWRFGLRRMLLGYAVG 561

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              +    +  +    L   +   +  L+       +     +        +  L  V  
Sbjct: 562 EGAALQGIQPYDEVGGLDAALAGPLAVLLERLEVAYAELAEPATPAQWGERLQALLTVFF 621

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
           + H +   L   +  + L                      +     +D   +  +    +
Sbjct: 622 EAHDERDELLLTQLLQLLERWQEHCACAAFAEPLPISVIREAWLGGLDQGGLNQRFLAGA 681

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            +     +  R + F  + L G+N+G +P+  +   F           ++  +       
Sbjct: 682 -VSFCTLMPMRAIPFRLVCLLGMNDGDYPRQQSPLDFDLMRNDYRPGDRSRREDDRYL-L 739

Query: 687 DFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
              + +    L  +   R   +N     S  + +L       +  +    G+  L    +
Sbjct: 740 LEALLSAREQLYVSWVGRSIRDNGERPPSVLIGQLRDHLAAGWRLDPDGDGEALLRALTQ 799

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                 QP  +R     P +     ++++   + ++    +              +    
Sbjct: 800 --EHPLQPFSRRYFHDAPEQGVDGLFTYAREWREVHREDEIGVPDAEAPLPPLELEGALG 857

Query: 805 RTDRGTLFHNIITELIKKRINKNTPE 830
                    N +    ++R+     +
Sbjct: 858 LRALAEFLANPVNAFFQQRLKVRFDD 883


>gi|190895193|ref|YP_001985486.1| hypothetical protein RHECIAT_PC0000866 [Rhizobium etli CIAT 652]
 gi|190700854|gb|ACE94936.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 868

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 94/777 (12%), Positives = 190/777 (24%), Gaps = 102/777 (13%)

Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
           +I      +  +A    G  + P    ++  AI   +           +     P   L 
Sbjct: 26  TIGRQILTLPLLAARLAGGFIAPASRENLYPAIRAGLAAGMYEDIGQVSDLPGMPSAVLT 85

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
            L  + D              +       + ++      +     +    ++ +  K   
Sbjct: 86  SLRSWWDAGILTEIADNPRLRDFTMLERRVREALPAGTLAPPDLVEAALKRLHHAPKLLG 145

Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
            V L E  +       I    R  + +      +                R+        
Sbjct: 146 SVTLQEIPD-------IKPIWRQLIVQLCDVVPV----------------RWVAPAHCQR 182

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
                           + A+      +  A L   P ++     ++         +    
Sbjct: 183 NW----------FAGTVEALPAGRSQITAADLCADPRSEVREALRWARALIAEDGISPSE 232

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP---- 533
               +     L    L          H  H    L+  + +    L D +L+ ++     
Sbjct: 233 IAITATSPNTLDDTFLVLAREAGLPLHFSHGVPALATREGQSCAALADVLLRGLSQERVR 292

Query: 534 ----------------LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                                    +           +       +    E+  LP +  
Sbjct: 293 LLFARVSPARQNIPLDWAKGLRRSAALSTGQHWRHALRQARAERADGDAAENALLPVIEL 352

Query: 578 EEEGKTLSSLFSKIIETGSCIK----ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
              G   +    +++  G  +     A  +     +   +    V    E  S++     
Sbjct: 353 LARGLLEADRAGRLLLHGPALTLWQDALRMAPPQAVELSLQALRVDDGKEPGSSVVWGPA 412

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
                 +   + L GL    WP+   ++P L + +   + L +A+           + + 
Sbjct: 413 RHLAGASRKHVRLLGLEANAWPRQAIEDPLLPQHLLGKIRLPSADIADEDRRMHNLIVSQ 472

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVL------GGTDFFDNLKKRGQCYLDWTRKLDY 747
           +     +R  R       A+  L R          G      +   R         K   
Sbjct: 473 SDGYALSRGHRSATGALQAASTLWRRDQERIVSRSGIPRHAFSESDRLYARPPDAGKQRQ 532

Query: 748 TTKQPHYKRPKPFPPLEAQPRTY----------------SFSEIKQLINDPYAVYARRIL 791
                   R                              S + I +L+ +P        L
Sbjct: 533 VRSSRACWRAWQDSERHTMHDGLVRANHPLILDALAEVQSTTSINRLLCNPLGFVWEYAL 592

Query: 792 KLDF--IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS-------- 841
                 +       D    G L H +I  +++    +NT EI   +              
Sbjct: 593 HWREPNLDPQPLALDHRAFGELVHALIGGVLRNGAPRNTDEIEIGLADEARRLGDAWPIA 652

Query: 842 -HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI----QSSIEKIFVNIPAK----MAIE 892
                  L  H   + R    +     L           +  E I    P      +++ 
Sbjct: 653 RAVPPGLLWRHTMTVARERASRGLRDALGEPRGTSWTELTFGEPIAEPHPWTTLSPVSVG 712

Query: 893 SIGIHLTGFADRIDLLKS-GFVDITDYKTGDNPKKETA---QKLIDPQLSLEAAALK 945
           + G+   G  DR+D   S G   ITDYK G  P+++      +  + Q    A A +
Sbjct: 713 ATGVAFRGRIDRLDEDGSRGTAIITDYKAGAAPERKKTIVFNRGTELQRVFYALAAR 769


>gi|325283117|ref|YP_004255658.1| UvrD/REP helicase [Deinococcus proteolyticus MRP]
 gi|324314926|gb|ADY26041.1| UvrD/REP helicase [Deinococcus proteolyticus MRP]
          Length = 767

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 77/749 (10%), Positives = 189/749 (25%), Gaps = 124/749 (16%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
               +     T +A  E+R     +  +   +   + +          A           
Sbjct: 82  DAGEILAVTFTNKAAAEMRERAGRLVPEADRL--WMSTFHSAGVRILRAYGEHI------ 133

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
              ++R   +        +   DI+K +        P +   A      +  +ID  ++ 
Sbjct: 134 --GLKRGFVIYD-----DDDQLDILKQITGGMSGFGPDTNLRA------VRGLIDRAKSN 180

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            +    +             +  + +    + +  R    NA          +R   E  
Sbjct: 181 LETPAQMERSGEPYLAG---IPRELMAETYRQYEARKKAQNAIDFGDLITETVRLFQEVP 237

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A   L   +A+  +  +V+   D       +     +
Sbjct: 238 AVLDKVQNRARFIHVDEYQDTNKAQYELTRLLASRDSNLLVV--GDPDQSIYRFRGADIQ 295

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P   + +L                            +      +  
Sbjct: 296 NILDFQK-----DYPDAKVYRL---------------------ESNYRSSANVLTAANRL 329

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITAD 395
              N + L+  +  +++    V    A + R E   +A  L     E +     A++   
Sbjct: 330 IENNAERLDKTLRPVKEGGHPVVFHRASDHRGEGDFVADWLTRLHGEGRSFSDMAVLYRT 389

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L R GI   I  G+          + S         D +A+  +V  P  
Sbjct: 390 NAQSRVIEESLRRVGIPARIVGGVGFYDRREIKDILSYARLALNPADDVALRRIVGRP-- 447

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                                   +       L  L+    A   +           +  
Sbjct: 448 ------------------------RRGIGDSSLARLLDWARANGVS------VLEACARA 477

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
           +++  +    +       L+   +             +   T   L  +  +       L
Sbjct: 478 EQDSVLERGANKATEFAALMAAMSEAADNYEPAPFLRFVMETSGYLDMLRQEGTEGQVRL 537

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              EE  + +  +S+  +       +    +  +  +   +    K      + ++    
Sbjct: 538 ENLEELISAAEEWSQENQGTIGDFLDDAALVASVDDMRAAQE--NKGVPEDAVTLMTLHN 595

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + + G+ EG+ P   +              L        +    +       
Sbjct: 596 AKGLEFPVVFIVGVEEGLLPSRNS--------------LNERGGIEEERRLFYVGITRAM 641

Query: 696 HLIYTRSLRENNI-----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
             ++  +               SR+L+ +             +  + +  + + +DY  K
Sbjct: 642 ERLFLTAAENRMQYGRTNAAEDSRFLEEIG------------QDFETWNSFGQPVDYKQK 689

Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                RP   P + A   T   +      
Sbjct: 690 TWKDFRPAAVPQVSAVKNTSPLTGAMAYR 718


>gi|220920723|ref|YP_002496024.1| UvrD/REP helicase [Methylobacterium nodulans ORS 2060]
 gi|219945329|gb|ACL55721.1| UvrD/REP helicase [Methylobacterium nodulans ORS 2060]
          Length = 816

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 88/742 (11%), Positives = 187/742 (25%), Gaps = 121/742 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E++     + G     +P + +   +  +                  
Sbjct: 118 DILAVTFTNKAAREMKERIGALIGSAGEGMPWLGTFHAIGTKI----------------- 160

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +   +   +     W A++LA  ID  +     
Sbjct: 161 LRRHAELVGLKSDFTILGTDDQLRLLKQVIEA--ANVDEKRWPARSLAQAIDGWKNRGLS 218

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E + A      G                + ERL  LNA       +  +R   E+    
Sbjct: 219 PEQVPA------GEAGAFGFGKGGKLYAAYQERLATLNAVDFGDLLLLCLRLWRENPDVL 272

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +  A    +  +A        +   D       W      +  
Sbjct: 273 TGYQDRFRYILVDEYQDTNVAQYLWLRLLAQGRRNVCCV--GDDDQSIYGWRGAEVDNIL 330

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +             ++  L+        +   ++ +  R+                
Sbjct: 331 RFEHDFPG---------AVVVRLERNYRSTGHILAAASTLIARN---------------- 365

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALITADRNL 398
               L   +   +     V +  A +  EEA  +   +    +      + A++      
Sbjct: 366 -EGRLGKTLRTEEGAGERVTVTGAWDSEEEARLLGETIEGLQARGHALSQIAVLVRISAQ 424

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            R ++    + G+   +  G             + L       D +A   ++  P    G
Sbjct: 425 MREIEDRFVQLGLPYRVIGGPRFYERAEVRDALAYLRLTANPADDLAFERIINTPKRGLG 484

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                   + +  + V L                                    +EE K 
Sbjct: 485 DATLQALHSLSRRQSVPLLHAAC---------------------------LIVETEELKP 517

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                +  +LQ  +        +       +I + +  T    +    D   +L NL   
Sbjct: 518 KPRSTLRALLQSFSRWAKLLEIQPHAEVAQTILEESGYTEMWQKERTADAAGRLENL--- 574

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                      + +E    + A       ++                  + ++    ++ 
Sbjct: 575 -------KELVRSLEEFPDLPAFLEHIALVMDASEAEG--------GERVSLMTLHAAKG 619

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L FDT+ L G  +G++P   A +         +      E+    A      A     + 
Sbjct: 620 LEFDTVFLPGWEDGLFPNQRAID---------ESGRAGLEEERRLAHVGLTRARRRAKIS 670

Query: 699 YTRSLRENN--IPTIASRWLQRLLV-----LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
           +  + R +     TI SR++  L       +     F     R             T   
Sbjct: 671 FAVNRRIHGLWSSTIPSRFVDELPESSVEVIEAPASFSYGPSRFDRQPTPFGSSYATPGW 730

Query: 752 PHYKRPKPFPPLEAQPRTYSFS 773
              +               S S
Sbjct: 731 QRAQANTAGQDRFGGGARSSRS 752


>gi|319943537|ref|ZP_08017819.1| exodeoxyribonuclease V gamma subunit [Lautropia mirabilis ATCC
           51599]
 gi|319743352|gb|EFV95757.1| exodeoxyribonuclease V gamma subunit [Lautropia mirabilis ATCC
           51599]
          Length = 1290

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 86/849 (10%), Positives = 201/849 (23%), Gaps = 100/849 (11%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE----ITGKKSTILPIIKSL 81
           L   + +  R  PL P  L +  I V +    Q L          +   +         +
Sbjct: 21  LRDLICDWMRAHPLAP--LENEVILVQSNGIAQWLTLSLAADPMPVDAGRPAFDGRGLGI 78

Query: 82  GDVVEEKF-------TADLLLSYNLNPPVSNIQRLLE---LARLILIWRNKLPDIIKDLY 131
              ++ +            +L  +  P  S   + L    L RL+     +         
Sbjct: 79  AAAIDLQLPSRFIWQAYRAVLGEDQVPERSPFGKDLLTWRLMRLLPALVARPQTQAVFEP 138

Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKW--------EDLHA------------ 171
               L           LA  LAD+ D  +     W        + L              
Sbjct: 139 LRRFLEEDPQLRRLHQLAAQLADLFDQYQVYRADWLEDWAHGHDRLRDSHGLGRGNIKTP 198

Query: 172 -LKNEKYGMWWLLAADFLKIASKY----WTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
                +       A   L   +++    W E L ++   +    +  + +   +      
Sbjct: 199 NATETQARPLPDQAGKPLPEDARWQPLLWRELLADVGPGAAGDNRATIHQRFIDACTSPD 258

Query: 227 -------KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI-----WNTI 274
                     +++ G +        ++S +       + +     H    I     W   
Sbjct: 259 AERPAGLPRRVVVFGISAMPRQALEVLSALGRWCQVLMCVQNPCRHYWGDIVPEREWLAG 318

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE----------MYGRS 324
             +            +H       LL     +  D   L    +E             R 
Sbjct: 319 LRRRHAHRPGVDPALSHLAAHGQPLLAAWGRQGRDFIGLLTQYDEEQGAAETRLLAIDRR 378

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNI----------QKCFSDVALIEADNEREEAISI 374
             I     P DT  ++    + +  P             +    +      + + E   +
Sbjct: 379 ADIFIDHEPADTLLLQLQQDILDLAPLAETRSRWPAVDPRRDRSIRFQICHSAQREVEVL 438

Query: 375 AIALRMSLDE----NKKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLST 423
              L  +         +   ++  D          +           I   ++     S 
Sbjct: 439 HDQLLAAFAADPTLQPRDVIVMVPDIATYAPHIQAVFGLYPPQDPRFIPFSMADQQSRSH 498

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVK----HPLAKFGFPEKYLSRAKNALELVALRGN 479
               + +  LL+          +  L++             +    R       +    N
Sbjct: 499 EPLLAAVEFLLDLPQARLSVSEVLDLLEVSSLQQRFGIEAEQLPQLRGWIEKSGIRWGLN 558

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQS-----RLSEEDKELAVLL-VDHILQCITP 533
                 ++L   V            +  + +         E  +    L  + + + +  
Sbjct: 559 PAQRQSLELDEAVAQNSWWFGLQRMLLGYVAGHTGTWSDIEPLDEISGLDGELLGRLLAL 618

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
           +   +          +  +W       L    + +  +   L      + L        E
Sbjct: 619 VRALQDTWQDVRNPATPQEWGVRLQAMLDRFFVADEGREGILLM-RLSEALQQWLDDCAE 677

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
               +        +      D E +  +   +  +     +  R + F  + L G+N+G 
Sbjct: 678 AQMDLPLPLSVVREHWLASFDDEGLGRRF-FAGAVTFATLMPMRAIPFRHVCLLGMNDGD 736

Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTI 711
           +P++     F           ++  +          + +    L  +   R   ++ P  
Sbjct: 737 FPRSRQPADFDLMGNDYRPGDRSRREDDRYL-FLEALLSAREQLSISWVGRSVHDDSPRP 795

Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            S  + +L        +    +  +        L    +   + R        A      
Sbjct: 796 PSVLVAQLRDH-IAAGWRLNGRDEETGAALLEALTTQHRLQPFSRAYFVREGAAGAMRAG 854

Query: 772 FSEIKQLIN 780
             ++    N
Sbjct: 855 DDDLFSYSN 863


>gi|78184984|ref|YP_377419.1| exodeoxyribonuclease V, RecC subunit [Synechococcus sp. CC9902]
 gi|78169278|gb|ABB26375.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Synechococcus
           sp. CC9902]
          Length = 1077

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 101/937 (10%), Positives = 228/937 (24%), Gaps = 102/937 (10%)

Query: 19  REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78
            E +  LL   L++        P  L ++ + V T    + L  +     G  S +    
Sbjct: 10  AEFLAQLLAQQLID------QQPGPLETLEVMVNTWPTSRWLGEQLAVANGISSLV--RF 61

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
              G    E          +L P  ++  R  +L   +L    +L +    L  +  L  
Sbjct: 62  PFPGSRFRELVR----QVLDLPPKEADPWRANQLVWSVLELLPELLEQPAALPLKRWLDG 117

Query: 139 PIS-------PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                       +   LA+ +AD  D             +         W          
Sbjct: 118 REGGGQSQALSRDRWQLARMIADAFDDYALYRADQLGQWSASPSSAETDWQPLL------ 171

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHL--MKGTKGPIIIAGSTGSIPATARLMSTV 249
              W     +LN           +                + + G +   P    L+  +
Sbjct: 172 ---WRRLADQLNRPPFGLQVRDAIDRLRRGAVSADSLPERLRLFGISALAPVQVDLIQAL 228

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
           +   +  + L      +     +               +       L      +  + + 
Sbjct: 229 SGVLDVEVYLLTPCPDLWQRCGSRRELLQEAWLEPPDGHWLEAAPRLEASFGRMGAEFQQ 288

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC-----------FSD 358
           +            R   +  S +    +   +  +LE     +                 
Sbjct: 289 LLEGSGDVQLGERREGDLFASPVQMAAASTGSPSLLEQLQEQLVDPEQSGGLLRLANDQS 348

Query: 359 VALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLELTRFGINID 414
           +    A     E   +   +   L    D   +   ++T   +    +   +      I 
Sbjct: 349 LLFQAAPGPWREVQLVRDRILQWLAADPDLAPRDVLVMTPQVDRYAPLLNSVFNDADAIG 408

Query: 415 ISAGIPLSTT------LHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLSR 466
           +     L+          S  + +LL           +   + +P  +   G   +  + 
Sbjct: 409 VDLPWRLTDRTQQSSPGLSMAMLNLLELAAGRLTATGLEQWLANPALQELQGLSSEDCTL 468

Query: 467 AKNALELVALRGN-----KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
               L+    R       +   +   L+  +   +             +  +    EL  
Sbjct: 469 MTRVLQHTGFRWGLDAKERGGDETHGLRWCLDRWLLGLVLPVRDGLAPAGAAPFQWELDP 528

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             +      +  L              + + W  L  + LQ +  D       L      
Sbjct: 529 ERLVRWWTLLDRLARMLEQFRR---PQTCAAWVALLQSVLQELFGDGRAWSGELQTWTAA 585

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
                    +  T   ++ +    ++++   +  ++ +    ++ +L I      R +  
Sbjct: 586 LEDWR----LRATDCALELDIAVVLEVLNEALSVDSGRFGH-RTGSLTISALEPMRAIPH 640

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
             ++L GL+  V+P+   +  F        L                 + +  RHL+ + 
Sbjct: 641 KVIVLMGLDGAVFPRPNQRPGFHLLEQHRRLGDPRGSDQDRYV-LLEALMSARRHLLISW 699

Query: 702 SLRENNIPTIASR------WLQRLLVLGGTDFF-------------------DNLKKRGQ 736
             R                WL +L     T                      +      +
Sbjct: 700 CGRNERTGEAQPPAAPVEQWLAQLQQELSTSSTDGLVLTPAANPLARSNFQIETPLSCDR 759

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS---------EIKQLINDPYAVYA 787
             L+  R LD +  +P      P      Q    + S         E+ + ++ P A + 
Sbjct: 760 RQLEARRWLDRSRPEPKQALAWPLAWTFPQADPGTSSKPEKPLVFEELLRWMHQPQAAWL 819

Query: 788 R-RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
           R + L+        +D D  +   L    + +   + +       N              
Sbjct: 820 RSKGLRPGEGIDAVEDLDPLELNALERYQLLDQNLEPLLAAGELPNWRSLLAGQGVLPAG 879

Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
                        + ++           +  I    V
Sbjct: 880 AGAALEQQELADRWQRLRRQLDSLGPCRREDIVIEGV 916


>gi|297157455|gb|ADI07167.1| ATP-dependent DNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 1221

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 75/680 (11%), Positives = 181/680 (26%), Gaps = 37/680 (5%)

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
              F   LL  + L   +    RLL  A        ++       +P           + 
Sbjct: 125 YHAFAGQLLKEHGLRIGLEPGARLLADATRFQ-LAARVLRTAPGPFPALIRPFADLVTDL 183

Query: 146 IWLAKNLADIIDIIETEE---------KKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
           + L   LA+ +   E                 L   +  K         + L +  + + 
Sbjct: 184 LALDAELAEHLISAERLRAYDGELLHTLDGVKLTNAELRKVPEAAHARLELLGLV-EAYR 242

Query: 197 ERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
                 +              A  R E   +++     +++     +  A   L+S +  
Sbjct: 243 ADKRGRDLLDFGDQIALSATLARTRPEVGRILREQFAVVLLDEYQDTSVAQRLLLSGLFG 302

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
              G  V    D       W   +  + +    +  ++         L            
Sbjct: 303 GGTGHAVTAVGDPCQAIYGWRGASVANLDDFPEHFPHADGSPARRFAL------------ 350

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                S        ++  +          +  +   +     +    V         EE 
Sbjct: 351 -----SENRRSGGRLLDLANGLAAPLRAMHEGVEALRPAPGAERDGMVRCALLPTHAEEL 405

Query: 372 ISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
             +A ++   +       + A++        R++  L    + +++     L      + 
Sbjct: 406 AWLADSIAHLVRTGTPPGEIAVLCRTAGDFARIQGALVEREVPVEVVGLSGLLHLPEVAD 465

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-RAKNALELVALRGNKNSYDIMDL 488
           L ++   +       A+  L+  P  + G  +  L  R   AL      G  +  D    
Sbjct: 466 LVAVCEVLQDPGANAALVRLLTGPRWRIGARDLALLGRRARALVRYEAGGPDDDEDPDRR 525

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
            +  ++ +   +  +      + L+ +  +  +            L         +  + 
Sbjct: 526 LAEAVEGVDPAEVVSLADALDTFLTPDGPDDGLPFSAEARVRFARLAAELRELRRSLADP 585

Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            +    ++  T    V L    +       E       + +            A      
Sbjct: 586 LMDVLHRVLATTGLEVELSASPQALAARRRETLGNFLDVAAGFAALDGEATLLAFLGFLR 645

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
                +           +T+ +L   +S+ L +D + + GL +  +P + A+  + +   
Sbjct: 646 TAAQYEKGLDNSLPGGENTVKVLTAHKSKGLEWDVVAVPGLVDKQFPSDQARESWTANAR 705

Query: 669 QSDLNLK-TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
                L+  AE     AA + +     +  +      E       +    R L+LG   +
Sbjct: 706 VLPHALRGDAETLPDVAAWNAKGLTAFKESMKAHQRTEELRLGYVTFTRPRSLLLGSGHW 765

Query: 728 FDNLKKRGQCYLDWTRKLDY 747
           +   +K+ +    +   L  
Sbjct: 766 WGPTQKKPRGPSAFLEALRE 785



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 59/533 (11%), Positives = 121/533 (22%), Gaps = 49/533 (9%)

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
            A E          + +      + D  A             +  +  +EL +  V     
Sbjct: 696  ARESWTANARVLPHALRGDAETLPDVAAWNAKGLTAFKESMKAHQRTEELRLGYVTFTRP 755

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                L +      +       S + +      +    +     P    +EE   L +  +
Sbjct: 756  RSLLLGSGHWWGPTQKKPRGPSAFLEALREHCEAGHGEVEAWAPPPEEDEENPALKAAAA 815

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                                  ++         +    +    +            L G 
Sbjct: 816  DRAWPLPLDPQGLARRRHAADVVLAHLDRLAAADSEPLVADRPSAHDTQHPSTGEPLSGP 875

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
             +  +                D               D +   G        + R ++  
Sbjct: 876  PDDAYDDAYDDPYAPEAYPDDDPYDDDPPPVAEPEPEDEDEGEGADEA----ADRPDDDL 931

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLD------WTRKLDYTTKQPHYKRPKPFPPL 763
                            +        G    +      W R LD    +   +R +     
Sbjct: 932  WAGWPAETGHPRPAPEEGATAAPGGGPPPEEARLVASWDRDLDALAGE--LRRARATVRD 989

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
               P T S S++ +L  DP         +    P  +       RGT FH  +    +  
Sbjct: 990  VPMPYTLSASQLLRLAADPDGF-----ARELARPMPRPPRPAARRGTRFHAWVESRFEAL 1044

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
                            D     E+  P I         ++  +F       +       V
Sbjct: 1045 PLPFLGP---------DELPGGEDDEPEIANE--RDLAELKEAFARTPYAHR---TPYRV 1090

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSG-------FVDITDYKTGDNPKKETAQKLIDPQ 936
              P ++A+      + G  D +               +I D+KTG +      Q     Q
Sbjct: 1091 EAPFQLALAGR--TIRGRIDAVYRAPRAVGGGPGVRYEIVDWKTGRS------QNADPLQ 1142

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
            L++   A       Q       +  ++ ++    +       +      L  +
Sbjct: 1143 LAVYRLAWAE---QQGLPLSAVSAAFVYVRSGETVRPAALPGRAELERILLGE 1192


>gi|119490340|ref|ZP_01622818.1| hypothetical protein L8106_13600 [Lyngbya sp. PCC 8106]
 gi|119453999|gb|EAW35153.1| hypothetical protein L8106_13600 [Lyngbya sp. PCC 8106]
          Length = 265

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 15/184 (8%)

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
                S +++      P A Y +    +     FK        G + H  + ++      
Sbjct: 1   MNYPLSATKLLDYQRCPQAYYFKYERGIKPNLFFKSQL----LGKVLHAALAKIYGDWSY 56

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN- 884
           ++       ++   +    +         +   +     + F++    ++   + + V  
Sbjct: 57  ESPIPNISWIRFCWERVSGELTPELSAQGLE--ILEGYYYQFIKTLPVLR---KPVAVEG 111

Query: 885 -IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAA 942
            I A++   ++   +TG  DR+D L  G +++ DYKT    P  E     ID QL L   
Sbjct: 112 KIKAQLNFCNLDFKVTGRYDRLDYLDEG-LELIDYKTSRKVPTFE--PDGIDLQLGLYYL 168

Query: 943 ALKA 946
           AL+ 
Sbjct: 169 ALEQ 172


>gi|254462521|ref|ZP_05075937.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206679110|gb|EDZ43597.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 817

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 94/714 (13%), Positives = 198/714 (27%), Gaps = 100/714 (14%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            AL    +            +LA       T +A +E+++    + G+    +P + +  
Sbjct: 60  KALTARIVHLMNAAKARPNEILA----VTFTNKAAREMKNRVGGMLGQSIEGMPWLGTFH 115

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            +                  V  ++R  EL  L   +     D    L  +  L    S 
Sbjct: 116 AIC-----------------VKLLRRHAELVGLKSNFTILDTDDQIRLLKQ--LLRAESI 156

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
            +  W A+ LA  ID  +      E + +     +        +F       + +RL+EL
Sbjct: 157 DDKRWPARMLAGFIDGWKNRALTPEKVPSADAGAFNN---RGTEF----YAMYQKRLLEL 209

Query: 203 NASSPVGYQIALMRAEAEHLMKG-----TKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
           NA       + ++     H             I++     +  A    +  +A       
Sbjct: 210 NAVDFGDLLLHVVTIFQTHDDVLNQYQRWFRYILVDEYQDTNVAQYLWLRLLAGGHKNIC 269

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
            +   D       W      +      +      P   + +L          +    NV 
Sbjct: 270 CV--GDDDQSIYGWRGAEVGNILRFEKDF-----PGAKVVRLEQNYRSTPHILAAASNVI 322

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
               GR                     L   +    +    V LI   +  EEA  I   
Sbjct: 323 AGNEGR---------------------LGKDLWTASEEGEKVRLIGHWDGEEEARWIGEE 361

Query: 378 L-------RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
           L       R     +    A++    +  R  +      G+   +  G      +     
Sbjct: 362 LEAMQSGTRGMNPISLNDMAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERMEIRDA 421

Query: 431 TSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
            +    +   +D +A   +V  P        ++ +  A  A  +  + G +   +   + 
Sbjct: 422 MAYFRIVTSPDDDLAFERIVNTPKRGLGDKAQQKIQMAARANGVSLVEGARIVVENKAIG 481

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
                 +A   +        +R           ++D        L           G   
Sbjct: 482 GKGGAELAKLVDGLDRWAALTRGP-----RVATIIDDD----AVLDDGPQMSEPEFGPPE 532

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
           +S   +L    L       H +                  K +E       N   +++ +
Sbjct: 533 MSH-VELAQVILDESGYTAHWQNDKTPEGPGRLENLKELVKALEQFE----NLQGFLEHV 587

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
           + ++D      + ++++ + I+    ++ L F  + L G  +G++P   + +        
Sbjct: 588 SLIMDNT----QEDEAAKVSIMTLHGAKGLEFPAVFLPGWEDGLFPSQRSMD-------- 635

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN--IPTIASRWLQRLLV 721
            +  LK  E+    A      A     + +T +          + SR++  L  
Sbjct: 636 -ESGLKGLEEERRLAYVGITRAEDICTISFTANRMVFGQWQSQLPSRFIDELPE 688


>gi|262340859|ref|YP_003283714.1| hypothetical protein BLBBGE_071 [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272196|gb|ACY40104.1| hypothetical protein BLBBGE_071 [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 866

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 68/351 (19%), Positives = 121/351 (34%), Gaps = 38/351 (10%)

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
           E+++   +  S L+I G  +  L NFD  I+   NEGV P    +   +   ++  L +K
Sbjct: 462 ESIRYIRKNRSGLYITGFKDLFLKNFDVAIITSFNEGVLPPKNHEYSLIPFDIRKRLKIK 521

Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTR-SLRENNIPTIASRWLQRLL-VLGGTDFFDNLKK 733
                I   +H   +   +        +  +       SR++ ++           N   
Sbjct: 522 DFNNDI-YFSHFMRILQFSSERYLIYKNQPDEINSGEKSRFIYQMEINSKIPTKKINNPF 580

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
               ++ +   ++ T               E   + +S S I     +P   Y ++IL L
Sbjct: 581 IPINFIRFPIVIEKTKSI-------IHRLHELMSQGFSPSSIHLYNYNPLLFYYKKILSL 633

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-----NTPEINHLMKQIIDSHF-EKEN 847
           D            + G + H I+  L               E+  + + I+      KE 
Sbjct: 634 DETKETSFK---KEVGRVIHQILKILYSPIKESFITINRIHEMKRISESIVKKVLLGKEK 690

Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV---NIPAK--MAIESIGIHLTGFA 902
           +     +++  +      + +  +EK   +  KIFV          + I S  ++L G  
Sbjct: 691 IIEGKYMLFYFIVKTYIDNLISWDEKCIQNGHKIFVKKIECKVSTILNIGSKQVNLHGII 750

Query: 903 DRIDLLKSGFVDITDYKTGDNPKKE------TAQKLI-DP------QLSLE 940
           DRID    G   I DYK G   KKE        + +  DP      QL + 
Sbjct: 751 DRIDEY-DGIPRILDYKIGSYKKKEMNVSLINIENIFQDPNYGNTMQLLIY 800


>gi|254239045|ref|ZP_04932368.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa C3719]
 gi|126170976|gb|EAZ56487.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa C3719]
          Length = 1171

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 96/866 (11%), Positives = 227/866 (26%), Gaps = 68/866 (7%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L    V   R  PL PL    V ++  +    Q L+    E   +       I +  +V 
Sbjct: 25  LRDLAVSWMRRYPLAPLESERVLVH--SNGIAQWLKLALAEDPREDGGGGGGIAAALEVQ 82

Query: 86  ----EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                       +L     P VS + +     RL+ +    L            L+    
Sbjct: 83  LPAQFLWQAYRAVLGRESIPEVSELDKAPLTWRLMRLLPGLLERPEFRTLQRF-LADDAD 141

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLAADFLKIASKYWTER 198
                 LA+ LAD+ D  +     W D  +   ++               +  ++ W   
Sbjct: 142 LRKRHQLAERLADLFDQYQVYRGDWLDDWSQGRDQLRTANGQARPLGADERWQAELWRAL 201

Query: 199 LVELNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANH 252
           L ++ A S    +  + R   E L       +     +++ G +     T   ++ +A  
Sbjct: 202 LADVGADSLARSRSGVHRRFIEALRSASAAPRALPRRVVVFGISSMPAQTLEALAALARF 261

Query: 253 PNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
               + +     H    I             ++      ++       Q++   L  +  
Sbjct: 262 SQVLLCVHNPCRHHWADIVADKDLLRHEYRRQQRRAGVPADLDEDRQHQHAQPLLAAWGK 321

Query: 305 IKREDVKRLGNVSNEMYGRS------------------MVISKSFLPPDTSDMRNTDILE 346
             R+ +  L +  +    R+                    +               +  E
Sbjct: 322 QGRDYINLLDSYDDPDSYRNLFGEVNGGRIDLFSEEAPHGLLGQLQDDILELRPLAETRE 381

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRV 402
           +  P   +  + +    A + + E   +   L    + +     +   ++  D N     
Sbjct: 382 HWPPVAPRSDASIRFHVAHSAQREVEILHDQLLARFNADPSLKPRDVIVMVPDINAYAPH 441

Query: 403 KLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +        +  I   ++             L  LL           I  L+  P  
Sbjct: 442 IEAVFGQVPRDDQRFIPYTLADQGQRGREPLLIALEHLLKLPDSRFAVSEILDLLDVPAL 501

Query: 456 KFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVP 506
           +  F   E  L+     +E   +R   ++     L        +     +        V 
Sbjct: 502 RRRFGVDEADLATLHRWIEGAGVRWGLDAAQRERLGLPAGLEGNSWRFGLRRMLLGYAVG 561

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              +    +  +    L   +   +  L+       +     +        +  L  V  
Sbjct: 562 EGAALQGIQPYDEVGGLDAALAGPLAVLLERLEVAYAELAEPATPAQWGERLQALLTVFF 621

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
           + H +   L   +  + L                      +     +D   +  +    +
Sbjct: 622 EAHDERDELLLTQLLQLLERWQEHCACAAFAEPLPISVIREAWLGGLDQGGLNQRFLAGA 681

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            +     +  R + F  + L G+N+G +P+  +   F           ++  +       
Sbjct: 682 -VSFCTLMPMRAIPFRLVCLLGMNDGDYPRQQSPLDFDLMRNDYRPGDRSRREDDRYL-L 739

Query: 687 DFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
              + +    L  +   R   +N     S  + +L       +  +    G+  L    +
Sbjct: 740 LEALLSAREQLYVSWVGRSIRDNGERPPSVLIGQLRDHLAAGWRLDPDGDGEALLRALTQ 799

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                 QP  +R     P +     ++++   + ++    +              +    
Sbjct: 800 --EHPLQPFSRRYFHDAPEQGVDGLFTYAREWREVHREDEIGVPDAEAPLPPLELEGALG 857

Query: 805 RTDRGTLFHNIITELIKKRINKNTPE 830
                    N +    ++R+     +
Sbjct: 858 LRALAEFLANPVNAFFQQRLKVRFDD 883


>gi|300932549|ref|ZP_07147805.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens
           DSM 45100]
          Length = 864

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 90/726 (12%), Positives = 205/726 (28%), Gaps = 90/726 (12%)

Query: 30  LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEE 87
           L     +     +    V     T +A  E+R   +++ G ++       + +   +   
Sbjct: 82  LTRRIAHLLQTGVAPWQVLAITFTNKAAGEMRERVVDLVGPQAEKMW---VSTFHSMCVR 138

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
              A+  L       V  +     +       +  +  +IKD   +     P S  + I 
Sbjct: 139 ILRANANL-------VPGLNTNFTIYDSDDS-KRLITMVIKDAGMDLKEFAPRSVLSVIS 190

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
                       + E    E   A          +  A         +  RL   NA   
Sbjct: 191 N----------WKNELVGPEAALAEAQADSNPHTINIAT----LYATYQRRLRAANAVDF 236

Query: 208 VGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-IVLPG 261
                 ++     +       +     +++     +  A   L+ST+      A  +   
Sbjct: 237 DDLIGEVVGILRSNPAVTEHYRRRFRHVLVDEYQDTNHAQYVLVSTLVGTGEEAGELCVV 296

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            D       +   T ++      +   +T            L+      + +   +N + 
Sbjct: 297 GDADQSIYAFRGATIRNIEEFERDYPNATTIL---------LEQNYRSTQTILTAANRVI 347

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            R+    +  L  D  D                    +    ADNE +EA  +   +   
Sbjct: 348 ERNQGRREKKLWTDLGDG-----------------ERIGGYVADNEHDEANFVVEQIDDL 390

Query: 382 LDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
           +D +       A++    + +R ++  L R G+   +  G           + + L  I 
Sbjct: 391 VDNHGYSYSDIAVMYRTNSASRAIEDVLVRSGLPYKVVGGTRFYERREIRDIVAYLKVID 450

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
             ND +A+  ++  P    G                  +G   +  ++D     +  ++ 
Sbjct: 451 NPNDTVALRRIINTPRRGIGD-----RAIAQVTVHTEAQGIGFADALVDAAQGRVPLLSG 505

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLL---------VDHILQCITPLVTYKTNKNSTCGNLS 549
           +  N      +   +   +  A  L         V  + + +  ++     K     +  
Sbjct: 506 RGKNAIAGFLELMEALRAEAEASELKASDGSGLDVRDLGRIVGTVLDMTGYKAELEKSND 565

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
             D T+L    L  +    H        +      S    ++ E  + +  +   +++ +
Sbjct: 566 PQDGTRL--DNLNELISVGHEFSQEAANQRAYIEWSEAEQQLAEGEAPVG-SIQAFLERV 622

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
           + + D + +    +    + ++    ++ L F  + L G  +G +P   A      R + 
Sbjct: 623 SLVADADQIPVDQQNM--VTLMTLHTAKGLEFPVVFLTGWEDGQFPHMRALGD--PRELN 678

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
            +  L        +       A        TRS     +    SR+L  +         +
Sbjct: 679 EERRLAYVGITRAKQRLFLSRA-------ITRSGWGQPVNNPPSRFLSEVPDELVEWIRE 731

Query: 730 NLKKRG 735
                G
Sbjct: 732 EPSWGG 737


>gi|313201054|ref|YP_004039712.1| uvrd/rep helicase [Methylovorus sp. MP688]
 gi|312440370|gb|ADQ84476.1| UvrD/REP helicase [Methylovorus sp. MP688]
          Length = 1141

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 79/795 (9%), Positives = 194/795 (24%), Gaps = 57/795 (7%)

Query: 150  KNLADIIDIIETEEKKWEDLHAL----KNEKYGMWWL---LAADFLKIASKYWTERLVEL 202
            + LA++I  ++        L  L    +       W      A  L +A         E 
Sbjct: 321  EQLAELIAALQATAGADAALCRLRCLPQLRAGEESWQVVSALAQLLNLAVAQLWFVFQEA 380

Query: 203  NASSPVGYQIALMRAEAEHLMKG---------TKGPIIIAGSTGSIPATARLMSTV---A 250
                 V      + A A+                  +++     + P    L+  +    
Sbjct: 381  REVDFVEISQRALNALADDTDAPSDLALRLDYRIQHLLVDEFQDTSPGQVHLLQRLTRGW 440

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP-QYSLAKLLDFLDIKRED 309
               +G  +    D       +           +       H     L +         + 
Sbjct: 441  EAGDGRTLFAVGDPMQSIYRFRKANVGLFLEVAREGIGDIHLTPLQLCRNNRSCPPVVDW 500

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            +                 +  + P   +     D      P IQ        +     RE
Sbjct: 501  INHAFAKVFPREDSIARGAIRYRPFVATRADEVDTGVVMHPLIQGTDESNEQLRT---RE 557

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI--PLSTTLHS 427
             A+ + +         +++ A++   R+    +  ++ R   +I   A     L+     
Sbjct: 558  AALMVKLIREEWAAHPQRRIAVLVRARSHLEHLVADIRRHHRDIRFQAVEIEALAGRQII 617

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
              L +L +A+    D +    +++ P       + ++  A +       R         D
Sbjct: 618  QDLLALTHALHHRADRVNWLAILRAPWCGLTLADMHVLAASD------HRSTIWRLLQQD 671

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
             +   +     Q+        Q  L+++ +      +      +                
Sbjct: 672  ARLAAMTEDGRQRALHVRSILQEVLAQQGRLPVSRWLHSAWLMLGGPWCLWEPG-DVQDV 730

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             +            Q   +    ++  L+   +      L    I     ++ + +    
Sbjct: 731  QAFFALVDKLDNQGQFTPIRLAEEVEKLYAAADEAADGRLQLMTIHKSKGLEFDTVILP- 789

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                 ++ +T            +    E +  + + +        V       +      
Sbjct: 790  ----GLERKTGNQDSPLLLWEEVAIADEEQGSSVELVAAP----FVPKGARLDDGLTPYD 841

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR--WLQRLLVLGGT 725
                L  + AE    +  +        R  +   +          +   +LQ L      
Sbjct: 842  YLRLLEKERAEHEDARVLYVAATRTERRLHLIATATVNAKGEPRPASGSFLQLLWPQVAL 901

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
             F + +   G        +       P   R +             F+ +        ++
Sbjct: 902  QFAEAMAAEGVSETSPQAEATLADFVPPLVRLQQPQMPAVLQTATPFTPLWNPGEASESL 961

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                 L+              D GTL H  +  + ++ +        H     +    ++
Sbjct: 962  SLAASLE-------------ADIGTLAHRYLELMARQGLATWPEARIHQAMPAMLRWLQQ 1008

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
            +            +  ++  + L   +       +   +     +            DR 
Sbjct: 1009 QGHAEKQAHDAAAVVVQLLLTTLRSADGQWVLQAREGADAEVAWSYADASELKRYVVDRT 1068

Query: 906  DLLKSGFVDITDYKT 920
             + ++G   I DYKT
Sbjct: 1069 FV-ENGVRWIIDYKT 1082


>gi|289571423|ref|ZP_06451650.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T17]
 gi|289545177|gb|EFD48825.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T17]
          Length = 690

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 63/682 (9%), Positives = 141/682 (20%), Gaps = 77/682 (11%)

Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             +       +A++      A  +   L   GI  ++     L +    + + ++L  + 
Sbjct: 6   AEADGVKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVA 65

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA------LRGNKNSYDIMDLKSLV 492
                 A   ++  P  + G  +      +                   +         +
Sbjct: 66  DPTAGAAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCL 125

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            D I+   +                     L   +   +  LV            +  S 
Sbjct: 126 ADAISDPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASA 185

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGK------------------------TLSSLF 588
                    +++                                             ++ 
Sbjct: 186 PVSGGWAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVA 245

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
              ++  +   A  +EW  +    +        + +SS L     L   L          
Sbjct: 246 CDRVQVLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAH 305

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRE 705
               +     A    LS  +     L    +   +    +         +          
Sbjct: 306 GIPVLDTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPT 365

Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
              P   S +L  L  +                       D             +P    
Sbjct: 366 GTKPRGPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPL 425

Query: 766 QPRTYSF------------------SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
             R                      +        P        +                
Sbjct: 426 AARRGDVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPA 485

Query: 808 RGTLFHNIITELIKKRINKNT------------PEINHLMKQII---------DSHFEKE 846
           RG   H  ++ L++   +               P+ +  +                    
Sbjct: 486 RGLPNHLSVSSLVELVGDPVGARQRLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDL 545

Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
              P           +++           ++     V +P +M I      + G  D + 
Sbjct: 546 GDLPGAADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVF 603

Query: 907 LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
           +   G   + D+KTG  P    A +    QL++   A    +        V   FY  ++
Sbjct: 604 VDPDGGATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VR 660

Query: 967 QKFKIDCITNDKKKYSADELSE 988
               +           A  L++
Sbjct: 661 SGITVVPDELPAPGELAMLLTD 682


>gi|325687712|gb|EGD29733.1| exonuclease RexA [Streptococcus sanguinis SK72]
          Length = 1224

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 95/958 (9%), Positives = 233/958 (24%), Gaps = 123/958 (12%)

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            +L  +      + +  +  +   +  + +L               ++ K++  +   +  
Sbjct: 276  ALTLLAGLNELSSIEETAQILKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRK 335

Query: 140  ISPANAIWLAKNL--ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                      + L   D I+  + E     +L                DF+   ++ + E
Sbjct: 336  PMIERLRSFDQQLYQLDFIEQHQDECLPLVEL--------------LRDFVADFAQAYLE 381

Query: 198  RLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            R    NA          +             +     +++     +      ++  ++  
Sbjct: 382  RKKAENAFEFGDISHFAIEILERFPEVRRFYQERYHEVMVDEYQDTNHTQECMLDLLSR- 440

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDI 305
              G       D       +     +  +            Q             L+ L+ 
Sbjct: 441  --GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKLIVLKENFRSHLEVLEA 497

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA- 364
              +  KRL +        +         P   +    +     I    K   +    E  
Sbjct: 498  TNDVFKRLMDEEVGEIDYNETHYLVAGNPAKREPNPANRASFLIYEGSKESPEEEADEGL 557

Query: 365  --DNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGI 419
                   E   +   +    +E     K   L+TA R     +     +  I +    G 
Sbjct: 558  PQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLILAAFEQHQIPLVPDDGA 617

Query: 420  P-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
                 ++   ++   L  I    +  A+  L+K P+  FG  E      + + E      
Sbjct: 618  ANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQERSQENL 677

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP----- 533
             +   +  + + L    +  +         ++  S         L D I +         
Sbjct: 678  YEKLVNAHEGRGLNPALVTQELQKKLQHFHETLQSWRTYSKTHSLYDLIWKIYQDRFYYD 737

Query: 534  -LVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             + T            ++S    +   +  + +          L  + +    S   +  
Sbjct: 738  MVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDL--ASVPVAAP 795

Query: 592  IETGSCIKANAIEWIDIITRLI--DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
             +    +  +  + ++     +    +    +   S+ +F            D  +    
Sbjct: 796  KDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIIFSRTKGVGIKYVADVSVSVED 855

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA--------NGTRHLI--- 698
                     + +    +   ++L L +  + +         A         G++ ++   
Sbjct: 856  PYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEVLDKR 915

Query: 699  ---------YTRSLRENNIPTIASRW-----------LQRLLVLGGTDFFDNLKKR-GQC 737
                      + SLR          +                 +   +       R  + 
Sbjct: 916  QWGKSQQGRLSASLRSQLNNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRINEP 975

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAV--YARRILKLD 794
             L     L    +    +R         +  +   S I+   +  P  +  +   I+  D
Sbjct: 976  VLFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIMDTD 1035

Query: 795  FIPHFKKDPDRT-------------------DRGTLFHNIITELIKKRINKNTPEINHLM 835
             +    +                          G+  H ++  +            + L 
Sbjct: 1036 GLDIMDERAAFRPQPNFDLPDFGKKAKVTGAQVGSAVHELMQRIPLDNRPSMAVLRSALA 1095

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM----AI 891
            +   D   +K+   P I   +     ++             + +++    P  M      
Sbjct: 1096 QVQADEAVKKQIQLPKIASFFETDLGRLL----------IENSDRVRREAPFAMLKQDED 1145

Query: 892  ESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
                  L G  D   +       + + DYKT               QL L A AL   
Sbjct: 1146 SGQEFVLRGILDGYLLFED---RIILFDYKTDKYKDSSELIARYRGQLDLYAQALSRS 1200


>gi|55822939|ref|YP_141380.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55738924|gb|AAV62565.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 775

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 79/690 (11%), Positives = 194/690 (28%), Gaps = 120/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R     +    +T   +I +   +       +       N     
Sbjct: 60  NILAITFTNKAAREMRER--AVALNPATSETLIATFHSMCVRILRRE-ADHIGYNRNFTI 116

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++             L P+       +    I  AKN  D++D I  E
Sbjct: 117 VDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLLDEIAYE 163

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            +  +    +                    K + E L    A       +  +R   ++ 
Sbjct: 164 HQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNP 208

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 209 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 266

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  +  L +     ++ ++    V      R              
Sbjct: 267 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANEVIKNNRNRRPK----------- 310

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITA 394
                     K+         +    A++ER+EA+ +A  +   + E   N K  A++  
Sbjct: 311 ----------KLWTQNDEGEQIVYYRANDERDEAVFVASTIDNIVREKVKNFKDFAVLYR 360

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + S LN I   +D ++   +V  P 
Sbjct: 361 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANTSDNISFERVVNEP- 419

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                 +       +  L++   ++  +  + +          +
Sbjct: 420 ----------------------KRGVGPGTLEKLRNFAYEQNMSLLDASANIMLSPIKGK 457

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                       +      ++  +   +      ++      +                 
Sbjct: 458 A--------AQGVYDFANMILNLRDQLDGLSITDTVEAILDKSGYLDALSMQQTLESQSR 509

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  +++  F +    G+  +         +  L           +++ + ++   
Sbjct: 510 IENIEEFMSVTKNFDETNTDGTEDETGIDRLGRFLNDLALIADTDDGEVEAAEVTLMTLH 569

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P + A         +  L               +      
Sbjct: 570 AAKGLEFPVVFLIGMEEGVFPLSRASEEPDELEEERRLA--------------YVGITRA 615

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRL 719
             +++     TR+L         SR+L+ +
Sbjct: 616 EEILFLTNANTRTLFGKTSYNRPSRFLREI 645


>gi|332362058|gb|EGJ39860.1| exonuclease RexA [Streptococcus sanguinis SK49]
          Length = 1224

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 94/854 (11%), Positives = 214/854 (25%), Gaps = 107/854 (12%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGST 236
             L  DF+   ++ + ER    NA          +             +     +++    
Sbjct: 366  ELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILETFPEVRRFYQERYHEVMVDEYQ 425

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS- 295
             +     R++  ++    G       D       +     +  +            Q   
Sbjct: 426  DTNHTQERMLDLLSR---GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKL 481

Query: 296  ------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                      L+ L+   +  KRL +        +         P   +    +     I
Sbjct: 482  IVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHHLVAGNPAKREPNPANRASFLI 541

Query: 350  PNI----QKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVK 403
                    +  +D  L +A +  E  + I   +R+  +E    K   L+TA R     + 
Sbjct: 542  YEGSMESPEEEADEGLPQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLIL 601

Query: 404  LELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                +  I +    G      ++   ++   L  I    +  A+  L+K P+  FG  E 
Sbjct: 602  AAFEQHQIPLVPDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDEL 661

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                 + + E       +   + +  + L    +  +         ++            
Sbjct: 662  ARLSLQASQEHSQENLYEKLVNALQGRGLQTALVTQELQKKLQHFHETLQGWRTYSKTHS 721

Query: 523  LVDHILQCITP------LVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNL 575
            L D I +          + T            ++S    +   +  + +          L
Sbjct: 722  LYDLIWKIYQDRFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRIL 781

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              + +    S   +   +    +  +  + ++     +         + SS+  IL   +
Sbjct: 782  ENQHDL--ASVPVAAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTK 839

Query: 636  SRL--LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
                    D  +             + +    +   ++L L +  + +         A  
Sbjct: 840  GVGIKYVADVSVSVEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAET 899

Query: 694  TRHLI--------------------YTRSLRENNIPTIASRW-----------LQRLLVL 722
              +L+                     + SLR          +                 +
Sbjct: 900  KLYLVGKGSQEALDKRQWGKSQQGRLSVSLRSQLSNFQDWLYAIQAVFSDENLAYETRFV 959

Query: 723  GGTDFFDNLKKR-GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-IN 780
               +       R  +  L     L    +    +R         +  +   S I+   + 
Sbjct: 960  TDEELTSEEIGRINEPVLFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVR 1019

Query: 781  DPYAV--YARRILKLDFIPHFKKDPDRT-------------------DRGTLFHNIITEL 819
             P  +  +   I+  D +    +                          G+  H ++  +
Sbjct: 1020 TPSQIKKFYEPIMDTDGLDIMDERAAFRPQPNFDLPDFGKKAKVTGAQVGSAVHELMQRI 1079

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                        + L +   D   +K+   P I   +     ++             + +
Sbjct: 1080 PLDSSPSMAVLRSALAQVQADEAVKKQIQLPKISSFFETDLGRLL----------IENSD 1129

Query: 880  KIFVNIPAKM----AIESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
            ++    P  M     I      L G  D   +       + + DYKT             
Sbjct: 1130 RVRREAPFAMLKRDEISGQEFVLRGILDGYLLFED---RIILFDYKTDKYKDSSELIARY 1186

Query: 934  DPQLSLEAAALKAG 947
              QL L A AL   
Sbjct: 1187 RGQLDLYAQALNRS 1200


>gi|77412397|ref|ZP_00788706.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae CJB111]
 gi|77161557|gb|EAO72559.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae CJB111]
          Length = 759

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 85/697 (12%), Positives = 206/697 (29%), Gaps = 126/697 (18%)

Query: 46  SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLL-----LSYNL 99
           ++     T +A +E+R          + T+   I +   +       +        ++ +
Sbjct: 54  NILAITFTNKAAREMRERAIALNPATQDTL---IATFHSMCVRILRREADYIGYNRNFTI 110

Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
              V   ++   + R+I                ++      S    I  AKN  D+++ I
Sbjct: 111 ---VDPGEQRTLMKRIIKQLN-----------LDTKKWNERSILGTISNAKN--DLLNEI 154

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             E++  +    +               +    K + E L    A       +  +R   
Sbjct: 155 AYEKQAGDMYTQV---------------IAKCYKAYQEELRRSEAMDFDDLIMMTLRLFD 199

Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           ++       +     I +     +  A  +L+  +A+      V+   D       W   
Sbjct: 200 QNKDVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGA 257

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             ++            +PQ  +  L +     ++ ++   NV N    R           
Sbjct: 258 DMQNILDFEK-----DYPQAKVVLLEENYRSTKKILQAANNVINHNKNRRPK-------- 304

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSAL 391
                        K+         +    A+NE+EEA+ +A  +   + E     K  A+
Sbjct: 305 -------------KLWTQNDEGEQIVYHRANNEQEEAVFVASTIDNIVREQGKNFKDFAV 351

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +      +R ++  L +  I   +  G    +      + + LN +   +D ++   +V 
Sbjct: 352 LYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLNILANTSDNISFERIVN 411

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P                       +       +  ++S   ++  +  + +      + 
Sbjct: 412 EP-----------------------KRGVGPGTLEKIRSFAYEQSMSLLDAS-----SNV 443

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
           +    K  A   V  +   I  L +   +   T    ++ D T           L     
Sbjct: 444 MMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQNTL---ES 500

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              +   EE  +++  F    E     +         +  L           +++ + ++
Sbjct: 501 QARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAEVTLM 560

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + L G+ EGV+P + A              ++ A++   +    +   
Sbjct: 561 TLHAAKGLEFPVVFLIGMEEGVFPLSRA--------------IEDADELEEERRLAYVGI 606

Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723
                +++     TR+L         +R+++ +    
Sbjct: 607 TRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDEL 643


>gi|15678539|ref|NP_275654.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621583|gb|AAB85017.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 683

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 68/709 (9%), Positives = 170/709 (23%), Gaps = 110/709 (15%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           ++   +          P  L    +   T++A  EL+   I   G ++  +  I ++   
Sbjct: 38  IIVERVAHLIDERGAEPSSL---VVITFTRKAADELKERIIRRVGGRAEEM-QISTIHSF 93

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                                       +       ++   ++        L L      
Sbjct: 94  CNRILRMYP-------------DHHTLGSNFH--VLDEENQLMFIYEHREQLGLGNVQRE 138

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
              L   +       +      E L      K    + +    +  A + +   + E   
Sbjct: 139 RFPL---IQGFFSECQENMVDPETLIQHYRNKGAGRFEMT---VAEAYQRYLNLMDENGL 192

Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
               G Q  ++R            +     +++     +     R +  +A       + 
Sbjct: 193 LDFAGMQWRVVRLLENDSKILDDLRSRYRFLMVDEYQDTNQIQERFLELLAGEE--CNIF 250

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       +   T ++                     +  L+     V  + +V+  
Sbjct: 251 AVGDEDQSIYGFRGSTPENFLGFQKKYGAE----------VVMLEKNFRSVPSIVDVTQR 300

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                    K   P                   +   + V +++    ++E  ++   +R
Sbjct: 301 FMDGYREYPKDIRPV------------------RDSENRVFILDNPTHQDEPSNVVGIIR 342

Query: 380 MSLD-----ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
             +D          + L  + ++ A  +  EL R GI  ++                   
Sbjct: 343 ALVDHGVIPHQGYVTLLFRSVKHDAVEIMNELRREGIPFNVYGEGG-------------- 388

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
              F   + + I  L+ H             +    L        +         + +LD
Sbjct: 389 --FFDREEILYIMHLLHH-------TRNERRKIIRKL-KYEHLEGEFMDLTPGSVNRILD 438

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               +                D +    LV       + L   +                
Sbjct: 439 MDEEELRGLREHREFRGAGFTDPDDIRKLVALNRLIDSDLGVLERYYEILELTEYPHRLL 498

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           +            +      L+      +L   + +I               + I   + 
Sbjct: 499 ER----------GDDESREKLYNLARFSSLIKDYERISLEPGVEGLM-----EFIRMAMS 543

Query: 615 GETVKPKIEKSS---TLFILGTLESRLLNFDTLILGG-LNEGVWPKNTAKNPFLSRVMQS 670
           G   K          ++ I+    ++ L F  +I+    N     K   ++         
Sbjct: 544 GRIKKYDQILLDNPYSVNIMTMHRAKGLEFPVVIICSVFNGKFPRKVRERSELELPEELR 603

Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
              ++T E  I +    +      + ++   + + +      S +++ L
Sbjct: 604 RSTMRTDE--IEERRLFYVGMTRAQDMLIVSATKNHRGRIGYSEFIEDL 650


>gi|332653418|ref|ZP_08419163.1| ATP-dependent nuclease subunit A [Ruminococcaceae bacterium D16]
 gi|332518564|gb|EGJ48167.1| ATP-dependent nuclease subunit A [Ruminococcaceae bacterium D16]
          Length = 1206

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 78/898 (8%), Positives = 202/898 (22%), Gaps = 91/898 (10%)

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
             ++L P               L     D++                  ++         D
Sbjct: 292  SEELSPLEESRAAALTQQVKNLRDTAKDLLARAAERFDGDSTQVLADLQEAAPAVRGLMD 351

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG---------TKGPIIIAGSTG 237
             +    + +               +   ++       +              +++     
Sbjct: 352  LVLRFQEAYQAEKARRGVLDFSDLEHFAVKLLVGPDGQPTALANMWGARFEEVMVDEYQD 411

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            +      + + ++    G  +    D       +                     +    
Sbjct: 412  TNQVQNAIFTAISR--GGRTLFEVGDVKQSIYRFRLADPTIFLDKYRRFVPGDEAKEGEP 469

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
            +    L        ++    N+++   M      L               +  +     +
Sbjct: 470  R-KRVLSRNFRSRAQVLEGCNDLFRNIMSTQLGELDYTDDQALVPGAEFPESGDYALELN 528

Query: 358  DVALIEADNE--------REEAISIAIALRMSLDENK--------------KKSALITAD 395
             + L    ++        R EA  +A  +R  L+E                    L+ + 
Sbjct: 529  ALDLSYLGDQEGEKEDKNRLEARFVARRIRALLEEPLMVKEGDGVRPLRPSDVMILLRSP 588

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +       L   GI  +   G     T   ++  S+L  +      + +   ++ P+ 
Sbjct: 589  GVVLHHYIRALGEEGIPWNAEGGEDFFATTEVNVALSILQIVDNPRQDVPLIAALRSPVF 648

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMD----LKSLVLDRIATQKNNTHVPHWQSR 511
             F        RA    +  +                L+ L   R            W   
Sbjct: 649  GFDADHLAQLRAGTKGDFYSALTEAAQNGDTASQDFLRELEELRFGAGDRTCRQLIWHIY 708

Query: 512  LSEEDKELAVLL--VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
                   L   +   +     +  L           G  S+  +                
Sbjct: 709  EKTNILGLFGAMPGGEERQNNLLTLYALAGQMED-GGCRSLFQFLLRLERLRDTGAKLTA 767

Query: 570  RKLPNLWFEEEGKTLSS----------LFSKIIETGSCIKANAIEWIDIITR----LIDG 615
                         ++            +               + +  ++      L   
Sbjct: 768  AGGGGDGDGVSILSIHKSKGLEKPVVLVCGLSRRLNREDLMRPVLFHPVLGVGPKGLDRA 827

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW-------PKNTAKNPFLSRVM 668
              V+        +      E        L +                +       L+   
Sbjct: 828  RMVEYPTLARRAVSRQLEREMMSEEMRLLYVAMTRAKEKLILTLALTEGAKALERLAEDA 887

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
             + ++    E+           A         R+L        A+   +  +        
Sbjct: 888  AAPVSPVALERQQSVGQWILLHALTRPEGEILRTLVGGGTECTATLGPKWSIRWIEGQGL 947

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
            +  + R   ++  +R+ D            PF      P   + +++K  + D  A    
Sbjct: 948  EEARGRTGRFVPVSREEDGEDLTAALTWTYPFAAAVQAPSKLTATQLKGRVLDQEAAQEA 1007

Query: 789  RILKLDFIPHFKK--------DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
            +          ++              +GT  H  +  L  +  + +   I   +  ++ 
Sbjct: 1008 QGAPQTAPEPIRRPDFIARRQGLTAAQKGTALHLAMQYLPLEG-DHSPEAIAEAVAGMVR 1066

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKIFVNIPAKM---------A 890
              F        +         ++  +F         +  +++       +          
Sbjct: 1067 DSFLTSLQGEAVKP-------EVLSAFFTSPLGRELAQAQEVHREFKFSLLTPAGDYLPG 1119

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL--IDPQLSLEAAALKA 946
            +E   + L G  D   + + G + + D+K+      +  ++     PQLS  + AL+ 
Sbjct: 1120 LEGEEVLLQGVVDCWFVDERG-ITVLDFKSDRILPGQEEKRAQSYAPQLSAYSRALER 1176


>gi|94984975|ref|YP_604339.1| UvrD/REP helicase [Deinococcus geothermalis DSM 11300]
 gi|94555256|gb|ABF45170.1| UvrD/REP helicase [Deinococcus geothermalis DSM 11300]
          Length = 741

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 165/689 (23%), Gaps = 112/689 (16%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
               +     T +A  E+R        + +  L  + +          A           
Sbjct: 56  DPGEILAVTFTNKAAAEMRER-ARHLVEGADRL-WMSTFHSAGVRILRAYGEHI------ 107

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
              ++R   +        + L +I+  +      + P            L  I+D  ++ 
Sbjct: 108 --GLKRGFVIYDDDDQL-DILKEIMGSIPGIGAETHPRV----------LRGILDRAKSN 154

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                DL               A     A + +  R    NA          +R   E  
Sbjct: 155 LLTPADLARHPEPFISGLPREVAA---EAYRRYEARKKGQNAIDFGDLITETVRLFQEVP 211

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A   L   +A+     +V+   D       +     +
Sbjct: 212 AVLERVQDRARFIHVDEYQDTNKAQYELTRLLASRDRNLLVV--GDPDQSIYRFRGADIQ 269

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                                     +I       L      +       ++     +  
Sbjct: 270 --------------------------NILDFQKDYLDAKVYMLEQNYRSSARVLTIANKL 303

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITAD 395
              N + LE  +  +++    V    A ++R E   +A  L     E  +    A++   
Sbjct: 304 IENNAERLEKTLRPVKEDGHPVLFHRATDQRAEGDFVAEWLTRLHAEGMRFSDMAVLYRT 363

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L R  I   I  G+          + +        +D +A+  ++  P  
Sbjct: 364 NAQSRVIEESLRRVQIPAKIVGGVGFYDRREIKDVLAYARLAINPDDDVALRRIIGRPKR 423

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G            L   A     +          +       +               
Sbjct: 424 GIGDTALE------RLMEWARVNGTSILTACAHAQELNILERGAQKAVE----------- 466

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                             L+   +             +   T   L  +  +       L
Sbjct: 467 ---------------FAGLMHAMSEAADNDEPGPFLRYVIETSGYLDLLRQEGQEGQVRL 511

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              EE  + +  +S+  E       +    +  +  +      + K      + ++    
Sbjct: 512 ENLEELVSAAEEWSRENEGTIGDFLDDAALLSSVDDM--RTKQENKDVPEDAVTLMTLHN 569

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + + G  EG+ P   A              L        +    +       
Sbjct: 570 AKGLEFPVVFIVGTEEGLLPSKNA--------------LLEPGGIEEERRLFYVGITRAM 615

Query: 696 HLIYTRSLRENNI-----PTIASRWLQRL 719
             ++  + +          T  SR+L+ +
Sbjct: 616 ERLFLTAAQNRMQYGKTLATEDSRFLEEI 644


>gi|302550304|ref|ZP_07302646.1| RecB family exonuclease [Streptomyces viridochromogenes DSM 40736]
 gi|302467922|gb|EFL31015.1| RecB family exonuclease [Streptomyces viridochromogenes DSM 40736]
          Length = 281

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 85/264 (32%), Gaps = 32/264 (12%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S S     +  P     R I +L          +   RGTL H ++  L      + T 
Sbjct: 1    MSPSRASDFMQCPLLYRFRVIDRLPEK-----PSEAATRGTLVHAVLERLFDAPAAERTA 55

Query: 830  EINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                 +         +          ++        W     ++   +   E    S +E
Sbjct: 56   PRAKSLIPGQWDRLRETRPEVVELFADDPQGERLARWLGEAERLVERWFTLE--DPSRLE 113

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
                 +  +  +ES G+ L G  DR+D+  +G V I DYKTG  P+     +    Q+  
Sbjct: 114  PAERELFVEAELES-GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP-EYSEGALFQMKF 171

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
             A  +       +  R++  L Y+   +    D +  D          E+  + L+ +  
Sbjct: 172  YALVVWR--LKNVVPRRL-QLVYLGSGEVLTYDPVLAD---------LERVERKLLALWE 219

Query: 1000 LLQNGEQPFISHLRLSEKSNIQSE 1023
             ++   +      R ++      +
Sbjct: 220  AIRQATESGDWRPRPTK-LCGWCD 242


>gi|120402222|ref|YP_952051.1| exodeoxyribonuclease V subunit gamma [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955040|gb|ABM12045.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Mycobacterium
           vanbaalenii PYR-1]
          Length = 1084

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 100/889 (11%), Positives = 227/889 (25%), Gaps = 86/889 (9%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK----------S 72
             LL   L       P +P   A   + V  +   + L      I G+           +
Sbjct: 11  TDLLADGLGAMLADPPADP--FAEDLVLVSARGTERWLSQRLSHILGRGSGQDGICAGVT 68

Query: 73  TILPI--IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
              P   +  L    E+   +   + + L   +           +   W   L   +   
Sbjct: 69  FRHPRSLMAELTGTDEDDPWSPDAMVWPLLDVIDGC--------ITEPWCATLATHLGHF 120

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                  L      A+  A+ LA + D    +         L  +          + L+ 
Sbjct: 121 ADGEEKVLRQGRRYAV--ARRLAGLFDSYARQR------PQLLIDWIDGRTGALDEDLRW 172

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
             + +   L  ++   P       +    E   +  +  + + G T        L++ ++
Sbjct: 173 QPELYRALLAHVDTEPPHIRHAETVARLRESPSELPQR-LSMFGHTRLPATEIELLAALS 231

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK-RED 309
            H +  + LP     + T++            +S+     HP      LL  L    RE 
Sbjct: 232 THHDLHLWLPHPSDKLWTSLRGVHGAAPRRTDTSHR-DVDHP------LLATLGRDLREL 284

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            + L   +              L          D +  +  +       V +        
Sbjct: 285 QRVLPADAQTDESLGPADRPDTLLGWLQSDLGADAVRPQGRSCAPGDRSVQVHSCHGAAR 344

Query: 370 EAISIAIALRMSLDEN----KKKSALITADRNLARRVK----------LELTRFGINIDI 415
           +   +   L   L ++     +   ++  D      +                       
Sbjct: 345 QIDVLREVLLGLLADDPTLEPRDILVMCPDIETYAPLIVAGFGLGDVVSGAHPAHRLRVT 404

Query: 416 SAGIPLSTT-LHSSILTSLLNAIFKLNDFMAIATL-------VKHPLAKFGFPEKYLSRA 467
            A   L+ T     +   LL           +  L       ++                
Sbjct: 405 LADRALTQTNPLLGVARQLLGLAGGRATASEVLNLAEAAPVRLRFGFTDDDLDAIGDWVR 464

Query: 468 KNALELVALRGNKNSYD---IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
           +  +     RG+++ Y    + +     +DR+      +   H     +    +++   V
Sbjct: 465 EANIRWGFDRGHRHPYGVDFVQNTWRFGIDRVLAGVAMSDDSHAWLDTTLPLDDVSSNRV 524

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
           +   +    +   ++   S  G  +++DW       L  +         +LW   +    
Sbjct: 525 ELAGRLAEYVDRLRSVVESLSGAAALNDWLARLSEGLDALTAVSD---ADLWQTSQVGRE 581

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
            +         + ++    +   ++ R + G   +    ++ TL +   +  R +    +
Sbjct: 582 LADILAAAGAHADVELRLSDIRALLDRHLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVV 640

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT--RHLIYTRS 702
            L GL++GV+             + +   +        +       A G     L+ T +
Sbjct: 641 CLVGLDDGVF---PRSGVVDGDDVLARDPMTGERDIRSEDRQLLLDAIGAATEKLVITYT 697

Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-P 761
                        +  + +L   D   +   R    ++   +          K   P   
Sbjct: 698 GANEYSGQRKPPAVPVMELLDTLDVTTSAPVRETVLVEHPLQPFDVDNVTPGKLGMPAGR 757

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP-------DRTDRGTLFHN 814
           P    P   + +        P      R L          D                   
Sbjct: 758 PFTFDPTALTAATAAAGHRGPRPHLLGRPLPAPPPADVALDELIGFFKDPVKGFFRALDY 817

Query: 815 IITELIKKRINKNTPEINHLMK-----QIIDSHFEKENLPPHIDIIWRH 858
            +   ++   +    EI+ L +     +++D               WR 
Sbjct: 818 TLPWDVEAVEDAMPVEIDALQEWKIGDRMLDDMLRGMTPADAQQAEWRR 866


>gi|329939098|ref|ZP_08288472.1| RecB family exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329301983|gb|EGG45876.1| RecB family exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 354

 Score = 92.3 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 84/266 (31%), Gaps = 34/266 (12%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
            + S S     +  P     R I +L   P          RGTL H ++  L      + T
Sbjct: 73   SLSPSRAGDFMQCPLLYRFRVIDRLPEKPSP-----AATRGTLVHAVLERLFDAPAAERT 127

Query: 829  PEINHLM-----------KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
                  +           +  +   F  +     +   W     ++   +   E+  +  
Sbjct: 128  APRARSLVPGQWDRLLKNRPELAELFADDEDGSRL-AGWLEEAGQLVERWFALEDPTR-- 184

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937
            +E +   +  +  +ES G+ L G  DR+D+  +G V I DYKTG  P+     +    Q+
Sbjct: 185  LEPVEREMFVQTRLES-GLTLRGIIDRVDVAPTGEVRIVDYKTGKAPRP-EYAEGPLFQM 242

Query: 938  SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
               A  +       +       L  + L     +      +         +   + L+ +
Sbjct: 243  KFYALVIWR-----LKKVVPRRLQLVYLGSGDVVTYDPVIED-------LQGVERKLLAL 290

Query: 998  VTLLQNGEQPFISHLRLSEKSNIQSE 1023
               ++   +      R ++      +
Sbjct: 291  WEAIRTATETGDWRPRPTK-LCGWCD 315


>gi|300786788|ref|YP_003767079.1| RecB family exonuclease [Amycolatopsis mediterranei U32]
 gi|299796302|gb|ADJ46677.1| putative RecB family exonuclease [Amycolatopsis mediterranei U32]
          Length = 299

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 82/262 (31%), Gaps = 23/262 (8%)

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
           +                    +    S S        P     R + +L  +P       
Sbjct: 1   MPDADTVTTDTPASAVATEVRRRPALSPSRASDFKQCPLLYRFRAVDRLPEVPT-----K 55

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP---------PHIDII 855
              RGTL H+++  L      +  P     +     +    +            P     
Sbjct: 56  AQLRGTLVHSVLERLFALPAAERVPAQARELLGPAWTDLSADRPEWTELFDGEKPDDHAD 115

Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
           W     K+  ++ E E+  +  +E     +  ++ +   G+ L G+ DR+D+  +G + +
Sbjct: 116 WLRSAEKLLDAYFELEDPRR--LEPEACELHVEIEL-GSGVLLRGYIDRLDVAPTGEIRV 172

Query: 916 TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
            DYKTG  P +E  +     Q+   A  L       +       L  + L     +    
Sbjct: 173 VDYKTGAAP-REIGEAKAMFQMKFYAVVLWR-----LRGIVPRQLKLMYLTDGQSLAYTP 226

Query: 976 NDKKKYSADELSEKSLKNLIEI 997
           ++ +    +   E   + +++ 
Sbjct: 227 DEAELLRFERTLEAIWQAILKA 248


>gi|327482105|gb|AEA85415.1| exodeoxyribonuclease V gamma chain [Pseudomonas stutzeri DSM 4166]
          Length = 1150

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 88/900 (9%), Positives = 208/900 (23%), Gaps = 79/900 (8%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L    V+  R  PL P  L +  + V +    Q L+    E        +     +    
Sbjct: 19  LRALAVQWMRTHPLRP--LENEVLLVQSNGIAQWLKLALAEDPHNGGCGIAAALDVQLPA 76

Query: 86  EEKFTA-DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +     +L     P  S + +     RL+ +  N   + +        L        
Sbjct: 77  RFLWQVYRGVLGAQTTPQSSPLDKAALSWRLMRLLPNLFTNPVFASLKRF-LEKDDEQRK 135

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK----IASKYWTERLV 200
              L + LAD+ D  +     W +  A   ++        A  L       ++ W E L 
Sbjct: 136 LHQLCERLADLFDQYQVYRADWLEDWAAGRDQL-QHIKGTAQPLDAPNLWQAQLWREVLA 194

Query: 201 ELNASSPVGYQIALMRAEAEHLMKGT------KGPIIIAGSTGSIPATARLMSTVANHPN 254
           ++   +    +  + +    HL             +++ G +         +  ++ +  
Sbjct: 195 DVGEGALEQSRAGVHKRFVAHLRSAAQAPKGLPRRVVVFGISSMPAQVLEALKELSRYSQ 254

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL---AKLLDFLDIKREDVK 311
             + +     H    I     +                  +      LL     +  D  
Sbjct: 255 VLLCVHNPCRHHWGDI--VADKDLLAHHYRRQPARDVAAAANEYGQPLLAAWGKQGRDYI 312

Query: 312 RLGNVSNEMYGRSMVISKSF-------------------LPPDTSDMRNTDILENKIPNI 352
            L +  +E      ++                                  +  E   P  
Sbjct: 313 NLLDHHDEPDSYRHLLDGLNGGRIDLFTEPDTETLLGQLQSDILELRPLPETREAWGPVD 372

Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-- 406
                 +      + + E   +   L      +     +   ++  D N        +  
Sbjct: 373 ATADRSLRFHVVHSMQREVEVLHDQLLARFSADKQLSPRDVIVMVPDINAYAPHIEAVFG 432

Query: 407 -----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP- 460
                    +   ++             L  LL           I  L+  P  +  F  
Sbjct: 433 QVPRNDPRYLPFTVADQGQRGRQPLLIALEHLLKLPHSRFAASDILDLLDVPALRARFAI 492

Query: 461 ---------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
                                    R +      ++  +                  Q  
Sbjct: 493 NESDVPTLQRWIDGAGVRWGLDAEQRESLGMPAGLEQNTWRFGMRRMLLGYAAGRAPQLN 552

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
             E   E+A L        +T L       +      +   W +     L+         
Sbjct: 553 GIEPYDEVAGLEAALAGPLLTLLDHLDVALHELQQPATPVQWAERLQALLKVFFRPVSDA 612

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              L  +        L +  +   +          +     I+   +  +    + +   
Sbjct: 613 EELLLSQLLKLLEGWLRTCEVAQFAQ-PVPLSVVHETWLSGIEDGGLSQRFLAGA-VNFC 670

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
             +  R + F  + L G+N+G +P+  +   F           ++  +          + 
Sbjct: 671 TLMPMRAIPFKVVCLLGMNDGDYPRQQSPVDFDLMRNDYRPGDRSRREDDRYL-LLEALL 729

Query: 692 NGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
           +  + L  +   R   +N   + S  + +L       +     +     L     L   +
Sbjct: 730 SARKQLYVSWVGRNIRDNSERVPSVLIGQLRDHLANGWRSANGQPLLPALTQEHPLQPFS 789

Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                  P P             +   +         ++   +                 
Sbjct: 790 AAYFANEPGPDGLF---------TYSSEWREVHDEHSSQPAGERLPALVQDTPLSLRQLS 840

Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
               + +     +R+     +    +    D  F+ + L        +    +    ++E
Sbjct: 841 EFVRDPVGAFFSQRLKVKFDD--DELVNRDDEAFQLDGLENWQH---QDRLTQALKRWVE 895


>gi|148554134|ref|YP_001261716.1| ATP-dependent DNA helicase UvrD [Sphingomonas wittichii RW1]
 gi|148499324|gb|ABQ67578.1| ATP-dependent DNA helicase UvrD [Sphingomonas wittichii RW1]
          Length = 892

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 86/740 (11%), Positives = 191/740 (25%), Gaps = 118/740 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+R     + G+    +P + +   V                    
Sbjct: 194 SEILAVTFTNKAAREMRERVGRLLGQAVEGMPWLGTFHSVAARM---------------- 237

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    L  +  L          W A+ LA +ID  +    
Sbjct: 238 -LRRHAELVGLTPSFTILDTDDQLRLLKQ--LLAAADLDEKRWPARQLAGLIDRWKNRGL 294

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
              ++ A + E++               + + +RL  +NA       + ++     H   
Sbjct: 295 TPAEIDAGEAEQFANGRG------GELYQQYQDRLRAVNACDFGDLLLHMLTILKTHRDV 348

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     +++     +  +    +  +A        +   D       W      + 
Sbjct: 349 LADYQQRFRYVMVDEYQDTNSSQYLWLRLIAQERKNICCV--GDDDQSIYSWRGAEVANI 406

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      P  ++ +L          +     +     GR                
Sbjct: 407 LRFERDF-----PGAAVIRLEQNYRSTPHILAAASGLIAHNGGR---------------- 445

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397
                L   +         V ++   +  EEA  +   +             A++   + 
Sbjct: 446 -----LGKTLWTEAAEGEKVRIVGVWDGPEEARRVGDEIEAHERGGGKLDDVAILVRAQF 500

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             R  +      G+   I  G             + L  I +  D +A   +V  P    
Sbjct: 501 QTREFEDRFIAIGMPYRIVGGFRFYERAEIRDALAYLRTISQPADDLAFERIVNTPKRGL 560

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G                                        +     +   +   ++E  
Sbjct: 561 GDKAVAKLH---------------------------QLARAEGIPLALAAARILGTDELT 593

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             A          +  LV            LS  + T+  +     V + ++ K      
Sbjct: 594 PQARR-------ALGNLVGDIARWRDMLSQLSHPELTRQVLEESGYVAMLQNEKSTEAEG 646

Query: 578 E-EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             E    L+         G         +++ ++ ++D +       +++ + ++    +
Sbjct: 647 RLENLNELARAMEDYATLGD--------FLEHVSLVMDNDA----EAETAKVTVMTIHAA 694

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L FDT+ L G  EGV+P   + +         +  L + E+           A     
Sbjct: 695 KGLEFDTVFLPGWEEGVFPSQRSLD---------EGGLASLEEERRLGYVAITRARRRCT 745

Query: 697 LIYTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
           +I+  + R       +I SR++  L                     W+   D        
Sbjct: 746 IIHAANRRIYGQWTSSIPSRFVAELPDQHVEAETTMSGGESLWRAQWSEHADPFAHVGRS 805

Query: 755 KRPKPFPPLEAQPRTYSFSE 774
           +   P              +
Sbjct: 806 QGRGPGWQRATAAGGLGSPQ 825


>gi|217976782|ref|YP_002360929.1| UvrD/REP helicase [Methylocella silvestris BL2]
 gi|217502158|gb|ACK49567.1| UvrD/REP helicase [Methylocella silvestris BL2]
          Length = 790

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 77/685 (11%), Positives = 175/685 (25%), Gaps = 118/685 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R     + G     +P + +   +  +                  
Sbjct: 83  EILAVTFTNKAAREMRDRVALLAGPVGEGMPWLGTFHAISTKI----------------- 125

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +  +       +  W A++LA  ID  +     
Sbjct: 126 LRRHAELVGLKSSFTILDTDDQIRLLKQ--VLKAEDIDDKRWPARSLAYQIDAWKNRGLD 183

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH---- 221
              + A +   +                 + ERL  LNA+      +  +R   E+    
Sbjct: 184 PAHVPAGEAAAFAN------GKGGRLYALYQERLKILNAADFGDLLLETLRLFKENPDVL 237

Query: 222 -LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     +       +  +A       V    D       W      +  
Sbjct: 238 KQYQDRFKYMLVDEYQDTNTVQYLWLRLLAQ--GRHNVCCVGDDDQSIYGWRGAEVDNIL 295

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
              S+   +          +  L+        +  V+  +   +                
Sbjct: 296 RFESDFPGAK---------VIRLERNYRSTGHILAVAAGLIAHNQ--------------- 331

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNL 398
                     +       V  +   +  EEA  I   +           + A++      
Sbjct: 332 GRLGKTLFTDDEAGLMPTVTGVW--DSEEEARGIGEEIEQLARKGHAYDEVAILVRASFQ 389

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            R  +      G+   +  G             + L  + +  D +A   +   P    G
Sbjct: 390 MREFEERFITLGLPYRVIGGPRFYERAEIRDALAYLRCVAQPADDLAFERIYNTPRRGLG 449

Query: 459 FPEKYLSRAK-NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                          +  +   +   +  ++K                            
Sbjct: 450 ESTLQQLHEYGRLQRVPLIEAARFMIETDEIKPKQ------------------------- 484

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                      Q +  L+   +   S  G     + T++ +         E     ++W 
Sbjct: 485 ----------RQALRDLLANFSRWASLIGEKPHGELTEMIL---------EESGYTDMWR 525

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           ++     +     + E    ++      +      I         +    + I+    ++
Sbjct: 526 KDRTAEAAGRLENLKELVRAMEEFPD--LAAFLEHISLVMEAETKDAGPRVSIMTLHAAK 583

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F+T+ L G  EG++P   + +         +      E+    A      A     +
Sbjct: 584 GLEFETVFLPGWEEGLFPHQRSLD---------ESGRAGLEEERRLAYVGITRARRRAKI 634

Query: 698 IYTRSLRENN--IPTIASRWLQRLL 720
            +  + R +     TI SR+L  L 
Sbjct: 635 YFATNRRIHGLWQTTIPSRFLDELP 659


>gi|55821019|ref|YP_139461.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55737004|gb|AAV60646.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 775

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 79/690 (11%), Positives = 194/690 (28%), Gaps = 120/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R     +    +T   +I +   +       +       N     
Sbjct: 60  NILAITFTNKAAREMRER--AVALNPATSETLIATFHSMCVRILRRE-ADHIGYNRNFTI 116

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++             L P+       +    I  AKN  D++D I  E
Sbjct: 117 VDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLLDEIAYE 163

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            +  +    +                    K + E L    A       +  +R   ++ 
Sbjct: 164 HQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNP 208

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 209 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 266

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  +  L +     ++ ++    V      R              
Sbjct: 267 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANEVIKNNRNRRPK----------- 310

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITA 394
                     K+         +    A++ER+EA+ +A  +   + E   N K  A++  
Sbjct: 311 ----------KLWTQNDEGEQIVYYRANDERDEAVFVASTIDNIVREKVKNFKDFAILYR 360

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + S LN I   +D ++   +V  P 
Sbjct: 361 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANTSDNISFERVVNEP- 419

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                 +       +  L++   ++  +  + +          +
Sbjct: 420 ----------------------KRGVGPGTLEKLRNFAYEQNMSLLDASANIMLSPIKGK 457

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                       +      ++  +   +      ++      +                 
Sbjct: 458 A--------AQGVYDFANMILNLRDQLDGLSITDTVEAILDKSGYLDALSMQQTLESQSR 509

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  +++  F +    G+  +         +  L           +++ + ++   
Sbjct: 510 IENIEEFMSVTKNFDETNTDGTEDETGIDRLGRFLNDLALIADTDDGEVEAAEVTLMTLH 569

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P + A         +  L               +      
Sbjct: 570 AAKGLEFPVVFLIGMEEGVFPLSRASEEPDELEEERRLA--------------YVGITRA 615

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRL 719
             +++     TR+L         SR+L+ +
Sbjct: 616 EEILFLTNANTRTLFGKTSYNRPSRFLREI 645


>gi|158426099|ref|YP_001527391.1| DNA helicase II [Azorhizobium caulinodans ORS 571]
 gi|158332988|dbj|BAF90473.1| DNA helicase II [Azorhizobium caulinodans ORS 571]
          Length = 835

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 85/688 (12%), Positives = 176/688 (25%), Gaps = 120/688 (17%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E++     + G     +P + +   +                  V 
Sbjct: 117 SQILAVTFTNKAAREMKERIHAMVGDTVEGMPWLGTFHSIG-----------------VR 159

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    L  +  L          W A+ LA  ID  +    
Sbjct: 160 ILRRHHELVGLKSGFTILDTDDQLRLLKQ--LIAAEEIDEKRWPARMLASAIDGWKNRGL 217

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
             E + A    +   +       L      +  RL  LNA       +  +R   E+   
Sbjct: 218 TPEQVPA---GEGAAFANGRGQML---YAAYQARLKALNAVDFGDLLLEGIRLFRENPDV 271

Query: 225 GTKGP-----IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
             +       I++     +  A    +  +A       V    D       W      + 
Sbjct: 272 LAEYHRKFKYILVDEYQDTNVAQYLWLRLLAQ--GSRNVCCVGDDDQSIYGWRGAEVDNI 329

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
               S+                            G     +                   
Sbjct: 330 LRFESDFP--------------------------GAKVIRLERNYRSTGHILAAASHLIA 363

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397
            N   L   + +  +    V +  A +  EEA +I   +           + A++     
Sbjct: 364 FNEGRLGKTLFSEGEKGEKVTVTGAWDSGEEARAIGDEIEALQRAGHALSQIAILVRASF 423

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             R  +      G+N  +  G             + L  +    D +A   +V  P    
Sbjct: 424 QMREFEDRFVTLGLNYRVIGGPRFYERAEIRDALAYLRCVISPADDLAFERIVNVP---- 479

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                              +       I  ++ +           T +      L  + +
Sbjct: 480 -------------------KRGVGDAAIKQIRDVARAAGVPLMEATRLLTESEELKPKLR 520

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                 V    +        K  + +                        +      +W 
Sbjct: 521 STLRGFVQSFERWREQAENMKHTELAEVVL--------------------DESGYTEMWQ 560

Query: 578 EEEGKTLSSLFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
           ++     +     + E    ++   N   +++ I+ ++D             + I+    
Sbjct: 561 KDRSAEAAGRLENLKELVRSMEGFENLSGFLEHISLVMD----VDSGAGDDAVQIMTLHS 616

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L FDT+ L G  EG++P   A +         +      E+    A      A  + 
Sbjct: 617 AKGLEFDTVFLPGWEEGLFPHQRALD---------EQGKAGLEEERRLAYVGITRARASA 667

Query: 696 HLIYTRSLRENN--IPTIASRWLQRLLV 721
            + +  + R +     T+ SR+L  L  
Sbjct: 668 RVYFASNRRIHGMWNSTVPSRFLDELPD 695


>gi|219559252|ref|ZP_03538328.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17]
          Length = 693

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 63/682 (9%), Positives = 141/682 (20%), Gaps = 77/682 (11%)

Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             +       +A++      A  +   L   GI  ++     L +    + + ++L  + 
Sbjct: 9   AEADGVKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVA 68

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA------LRGNKNSYDIMDLKSLV 492
                 A   ++  P  + G  +      +                   +         +
Sbjct: 69  DPTAGAAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCL 128

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            D I+   +                     L   +   +  LV            +  S 
Sbjct: 129 ADAISDPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASA 188

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGK------------------------TLSSLF 588
                    +++                                             ++ 
Sbjct: 189 PVSGGWAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVA 248

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
              ++  +   A  +EW  +    +        + +SS L     L   L          
Sbjct: 249 CDRVQVLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAH 308

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRE 705
               +     A    LS  +     L    +   +    +         +          
Sbjct: 309 GIPVLDTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPT 368

Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
              P   S +L  L  +                       D             +P    
Sbjct: 369 GTKPRGPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPL 428

Query: 766 QPRTYSF------------------SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
             R                      +        P        +                
Sbjct: 429 AARRGDVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPA 488

Query: 808 RGTLFHNIITELIKKRINKNT------------PEINHLMKQII---------DSHFEKE 846
           RG   H  ++ L++   +               P+ +  +                    
Sbjct: 489 RGLPNHLSVSSLVELVGDPVGARQRLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDL 548

Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
              P           +++           ++     V +P +M I      + G  D + 
Sbjct: 549 GDLPGAADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVF 606

Query: 907 LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
           +   G   + D+KTG  P    A +    QL++   A    +        V   FY  ++
Sbjct: 607 VDPDGGATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VR 663

Query: 967 QKFKIDCITNDKKKYSADELSE 988
               +           A  L++
Sbjct: 664 SGITVVPDELPAPGELAMLLTD 685


>gi|162146539|ref|YP_001600998.1| UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785114|emb|CAP54658.1| putative UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 1184

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 87/804 (10%), Positives = 182/804 (22%), Gaps = 91/804 (11%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS--I 239
                D LK     W    ++            +     +                G+   
Sbjct: 385  ERTLDLLKDPGAAWVLYKLDGGIDH--LLLDEVQDTSPDQWAIAGGLTSEFFAGAGAHDD 442

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIP----TAIWNTITEKSTNITSSNTTYSTHPQYS 295
             A  R +  V ++        G D              + +          T S      
Sbjct: 443  GAPPRTLFAVGDYKQSIYSFQGADPAAFRHWRQRFRRQVEDAGRMWKEPALTVSFRSTAP 502

Query: 296  LAKLLDFL----DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
            + +L+D +    D  R  V+  G V   +  R     +  L P T      +        
Sbjct: 503  VLRLVDSVFSLPDAARGLVEPGGGVPGHLSARPGQGGRVELWPLTPIDEAGEDANPWAAP 562

Query: 352  IQKCFSDVALIEADNEREEAISIAIALR-----MSLDENKKKSALITADRNLARRVKLEL 406
             +      A     +    A  +A   R      +         L+    N  R +   L
Sbjct: 563  RENAGQSTAAQRLADSLA-AWIVAELRRPPEPGQAPLTPGDVLVLVPRRSNFVRALIRAL 621

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
                + +       L   +    L +L +A+    D + +A ++  PL            
Sbjct: 622  KTQDVPVATLVRTGLVDQVAVQDLMALCDALLLPQDDLTLACVLTSPLGGVSDDGVMDLA 681

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH--WQSRLSEEDKELAVLLV 524
                   +         +  D ++      A  +   +       S         A LL 
Sbjct: 682  VGRGDRPLWAVLRDRHAERPDWRAAWTMLDALFRRVDYASPYGLLSEALGPLGGRARLLA 741

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
                +   P+    +           S                   +    W     +T+
Sbjct: 742  RLGPEAAEPVDELLSAALRYESLHPAS------------------LQGFLHWLRASQETV 783

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
                    +    + A+  + +     ++                +        L +   
Sbjct: 784  KREPDAAADMVRVMTAHGAKGLQARLVILPDT-------------VGTAKFDGGLVWARD 830

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
               GL+  +W         ++R +Q  +     E+        +         +     +
Sbjct: 831  QPSGLDLPLWVPRAEMGIGVTRALQQTIRAAAIEE---YNRLLYVALTRASDRLVVCGWQ 887

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
            +  + T  S ++            +     G        +            P+  P   
Sbjct: 888  QKRMVTDESWYMLCRRGFEQAGAEERPFDLGWEGTRLVLEEAPARLSGAPAAPRSRPEPP 947

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT------------------ 806
            A             I  P +  A+ +  L                               
Sbjct: 948  AVALPAWMGRAPDWIATPPSAEAKLLRPLVPSRPDDAPLGPQPAVRSPLAIARARRPAAR 1007

Query: 807  ----DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                 +G L H ++  L  +            + +              +D   +     
Sbjct: 1008 EQALRKGQLVHALLQYLPDRPAADRARVARDWLSRTGH----------GLDAAEQARIAA 1057

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
               + ++                P      + G  + G  DR+ +   G V + D+KT  
Sbjct: 1058 QVLAVMDDPAMAPLFGPGSRAEQPLAGI--AGGAVIVGQVDRMMVRP-GDVLLCDFKTNR 1114

Query: 923  NPK--KETAQKLIDPQLSLEAAAL 944
             P     +   L   Q++   A L
Sbjct: 1115 QPPDDAASVPVLYLRQMASYHALL 1138


>gi|163737322|ref|ZP_02144740.1| UvrD/REP helicase domain protein [Phaeobacter gallaeciensis BS107]
 gi|161389926|gb|EDQ14277.1| UvrD/REP helicase domain protein [Phaeobacter gallaeciensis BS107]
          Length = 1138

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 97/905 (10%), Positives = 220/905 (24%), Gaps = 121/905 (13%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE--FIEITGK 70
            P +   + ++  L         +   ++P     + +   + +A  E+            
Sbjct: 219  PGTGKTQTLVGRL------SVLKDRSVDPES---ILLLTFSNKAAGEMTDRAMLAWPEAA 269

Query: 71   KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
             S     I +      +           L      I     +A L   +         DL
Sbjct: 270  GSAW---IGTFHSFGLDLLR-RFHDRAGLPSDPRLIDATEAIALLEDEFPRLRLTHFNDL 325

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            +   P     S  +AI  AK+  ++ID     E   +   A +  +  +      + +  
Sbjct: 326  W--DPTDNLRSILSAISRAKD--EVIDQHRYRELAQQMADAAETGEDKIAAEKCLE-IAS 380

Query: 191  ASKYWTERLVELNASSPVGYQIA---LMR--AEAEHLMKGTKGPIIIAGSTGSIPATARL 245
                + +   E  A            L+         ++G    +++        A+ RL
Sbjct: 381  VYDLYEQLKAERGAVDFGDLVARPTALIESDRAVRTELQGRYDHVLVDEYQDVNRASVRL 440

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            +  +   P+G  +    D       +       ++           P     +L      
Sbjct: 441  LRALK--PDGKNLWVVGDAKQSIYRFRGA----SSYNIDRFETEDFPGGKSLQLSMNYRS 494

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
             +E        +      S   + +F                            + +  +
Sbjct: 495  SQEICDTFSAFATTRMAASGFQANAFKGKSGVSP--------------------SFVSVE 534

Query: 366  NEREEAISIAIALRMSLDEN--KKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
            ++  E   IA  +  + D+    +  A+I         V   L   GI +      PL  
Sbjct: 535  SKDHEIEEIAARVIAACDDTTSFRDQAVICKGNARLAEVAAGLEACGIPVLFLG--PLFD 592

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                    SLL+ +               P                A             
Sbjct: 593  RPEIKEALSLLSLVIDPRAMGLTCVASMQPFQMPIEDVAVAIETVRA---------SKKP 643

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
             ++D ++++                         E        ++     +    T    
Sbjct: 644  QLLDWRTVLAM------------------VPGMSERGRASAQALIDAFEGIEPTATAWQI 685

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                    D T+                   LW  +    L S   +            I
Sbjct: 686  ITKIYL--DRTRFAADIATQAHEGNANPALALWQFQNF--LRSALPEKSGYPVRDLLEHI 741

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL-------NEGVWPK 656
              + I++   D   +    +    + ++    S+ L F  L L  L       +      
Sbjct: 742  RRLVILSDERDLRDLPAAAQSIDAVRLMTIHGSKGLEFKVLHLPSLTSGSIPRSAKQSRG 801

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                +  +   +    +   A     Q    F   +     ++  +  + +     SR  
Sbjct: 802  LPPPDGMIEGPVFRGSDAVDAGHDEEQRCLFFVALSRAEDSLFLYAPNKKSNGHRQSRS- 860

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
              +  + G  +  N     +                     + F          S S++ 
Sbjct: 861  SFVDDISGQVYDQNPICTVRDI---------------AGEAEDFKLEVDGIARMSPSQLA 905

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH-LM 835
                 P   +   +L++                   HN +  ++ +   +     +   M
Sbjct: 906  TFDKCPRRFFFAHVLQVGGRRMESAP-------MRMHNAVQAVVDELTARPDHAPDETEM 958

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
            + IID+ +       H          +IS   L+   +++    +  +     +  E   
Sbjct: 959  QTIIDAAWAAHGPTEHGYAAEY---RQISDELLQFFIQLRQGEHRREL-QSLSLRFEDAE 1014

Query: 896  IHLTG 900
            + +T 
Sbjct: 1015 VLVTA 1019


>gi|118617851|ref|YP_906183.1| hypothetical protein MUL_2341 [Mycobacterium ulcerans Agy99]
 gi|118569961|gb|ABL04712.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 293

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 71/237 (29%), Gaps = 17/237 (7%)

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
               S S        P     R I +L              RG++ H  + +L      +
Sbjct: 14  RPALSPSRAADFKQCPLLYRFRAIDRLSEK-----PSTAQLRGSVVHAALEQLYALPAVQ 68

Query: 827 NTPEINHLMKQIIDSHF--EKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIF 882
             P+    + +         + +L   +    +    + + + L   +  +     +   
Sbjct: 69  RGPDTARSLVESAWEQVIAGELDLAGELAADQQAQLLEDARALLSGYYRLEDPRRFDPQS 128

Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLE 940
                ++ +    + L G+ DRID+  +G + + DYKTG  P    A        Q+   
Sbjct: 129 CEQRVEVELADGTL-LRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFY 187

Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
             AL             + L  I L     +D   +  +    ++      + +   
Sbjct: 188 GVALFRS-----RGVLPSRLRLIYLADGQVLDYSPDRDELLRFEKTLMAIWRAIQSA 239


>gi|311696294|gb|ADP99167.1| UvrD/REP helicase [marine bacterium HP15]
          Length = 721

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 78/704 (11%), Positives = 181/704 (25%), Gaps = 131/704 (18%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
           +     T +A +E+R    ++    +  L    +   +      +    +  L      +
Sbjct: 57  ILAVTFTNKAAKEMRYRIEQMMDIPARGL-WFGTFHGIAHRLLRSHWKDA-GLPENFQVL 114

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
               +L RLI     +         P+       S  +                 E  + 
Sbjct: 115 DSDDQL-RLIKRVMRENQIDESKWPPKQAQWFISSQKD-----------------EGLRV 156

Query: 167 EDLHALKNEKYGMWWLLAADFLKI---ASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
           + +     +           FL I     + + +   +            L+R+    L 
Sbjct: 157 DHIQENPGDH----------FLSIMLKIYRQYEKLCQQGGLVDFGE---LLLRSHELWLH 203

Query: 224 KG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +             I++     +       +  +A++     V+   D       W    
Sbjct: 204 RPELLAHYQSRFQHILVDEFQDTNTIQYAWLQVLASNRVPMTVV--GDDDQSIYGWRGAK 261

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++      +      P   L +L                                   +
Sbjct: 262 VENIQQYQRDF-----PNARLVRL---------------------EQNYRSTQMILKAAN 295

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--KKKSALIT 393
                N   L  ++         ++L  A NE++EA  IA ++   + +   + +SA++ 
Sbjct: 296 AVIANNQGRLGKELWTDGPEGEPISLYAAFNEQDEANYIADSISAWVQDGNLRSESAILY 355

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R ++  L R GI   +  G+            + L  +    D  A   +V  P
Sbjct: 356 RSNAQSRVLEESLMRQGIPYRVYGGLRFYDRQEIRNALAYLRLVQYRRDDAAFERVVNVP 415

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                                    R    K+   +  + +  S
Sbjct: 416 ----------------------------------------PRGIGAKSLAELREYATEQS 435

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
               E A  L+D            ++      G   +     L     Q +     +   
Sbjct: 436 ISLWESAERLLDAGQVKGRAKTGLQSFIAIIEGLSEMVGDASLHGLMKQTIENSGLKDYH 495

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKAN--AIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                E+G+       +++   S  +         + I +           +   ++ ++
Sbjct: 496 ASEKGEKGQARVENLEELVNALSDYEVEDGVDALSEFIAQAALDAGESQAGDHEDSVQLM 555

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + L G+ EG++P                ++L+   +   +    +   
Sbjct: 556 TLHSAKGLEFPLVFLAGVEEGLFPHG--------------MSLEEPGRMEEERRLAYVGI 601

Query: 692 NGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
               + L+ T +             L R +     D    ++ R
Sbjct: 602 TRAMKKLVLTYAESRRLYGQEKFNALSRFVREIPGDCLQEVRLR 645


>gi|257067800|ref|YP_003154055.1| hypothetical protein Bfae_05990 [Brachybacterium faecium DSM 4810]
 gi|256558618|gb|ACU84465.1| hypothetical protein Bfae_05990 [Brachybacterium faecium DSM 4810]
          Length = 906

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 89/844 (10%), Positives = 196/844 (23%), Gaps = 68/844 (8%)

Query: 198  RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
            R     A     Y   +    A                  +                   
Sbjct: 43   RPAVEPAVRVAQYLRLIEEHLAAASAPFWPARSFAVDPWSTARQLLHWRDAAVETGWDPA 102

Query: 258  VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
               G       A+ +        +T +           +  LL+              + 
Sbjct: 103  AAQGPLPERLAALRDLERAAEVGVTGTLAPCPADDLAEVIALLEGEAATWPLGIEELALH 162

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
             +             P   + +  + +    +P        V ++EA +E   A   A  
Sbjct: 163  EDPQAL-----PGMWPQLLALLDRSGVRCTIVPAASGGAPQVTVVEAQDEWTAADVAARF 217

Query: 378  LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
            L  + +    + ++     +    +   L R G+     A  P     H  +L   L+  
Sbjct: 218  L--AAEPAGHEDSVTVLASSDTDVLDRALHRRGLPAIG-AVDPSRDRAHHQVLGLFLDVA 274

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                D   +A L+   +               A     L         +   +      A
Sbjct: 275  TAPVDVHQLAALLDLRVLPGADGAAEPIGLVPAAARRRLLRALGREPGVGGPAWREALAA 334

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
             +++        +R+ +                                  ++S      
Sbjct: 335  LEESGHDTAIEAARVIDRLVGD-------------------PLPADGLFPPALSSRLDWL 375

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               L+ V   +   L +L   +  + + ++                    II        
Sbjct: 376  AERLRAVARGDGDLLASLTQVQVLQQVLAMLD------PGTPLARRTLQQIIDSCGSSGP 429

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL--K 675
                  + S   +            T++  G +    P+    +P   R + +       
Sbjct: 430  SPRARREVSDWAVCSRPAQLRAAGGTVLWWGPSAADAPRVLRWDPAERRALHAGGGRVPD 489

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
             A     +           R ++     R        S  L  L   G  D  D      
Sbjct: 490  PAGITALEVEASLAGLRRARTVVTVLPGRRCEEAPGPSGLLAHLEADGTGDRVDPAALLH 549

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKP-------FPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                +   +    T     +   P        P  +  P   S+++   L++ P+     
Sbjct: 550  DGRWELAGRSLPVTVPAQVRPAPPEETVRRTAPAPQLLPTRLSYTQAASLLSCPHHWALE 609

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---------PEINHLMKQII 839
              L +               GTL H ++  L+++R +             E    +   +
Sbjct: 610  YALDIRPAEVAVLPTGHRMIGTLLHAVVETLVQQRTDPALGGAPLTAPSGEEIGAVFDAL 669

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK-IQSSIEKIFVNIPAKMAI------E 892
                  E   P        +  +   S  E      ++ +          + +       
Sbjct: 670  VPQLASELELPGRRAERADVRDRAVRSLGELFTGTARAGLRITGTETRFSVPLTLPLAGG 729

Query: 893  SIGIHLTGF--ADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALKAGS 948
               +   G    D +D    G   + D K   +  +  +        QL+  A  +    
Sbjct: 730  ERTVEFVGSRDVDAVD--AEGRRIVLDLKWSRSRTRYGDLYDTGEAIQLASYAWTVAQ-- 785

Query: 949  FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
              +      A++ Y  L+    I                +++ + + E +T   +     
Sbjct: 786  --EDPSAAPADVGYFLLRSGEFISADPALDPHRRTPMDVDEAWRRMREAITATLDEVASG 843

Query: 1009 ISHL 1012
               +
Sbjct: 844  TVRV 847


>gi|138893931|ref|YP_001124384.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
 gi|134265444|gb|ABO65639.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
          Length = 724

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 83/709 (11%), Positives = 193/709 (27%), Gaps = 112/709 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           ++     T +A +E+R     + G  +       I +   +       D+     +N   
Sbjct: 58  NILAITFTNKAAREMRERVQALLGGAAEDVW---ISTFHSMCVRILRRDI-DRIGINRNF 113

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           S +    +L+ +  I + K  D             P +    I  AKN  D++       
Sbjct: 114 SILDPTDQLSVIKAILKEKNIDPK--------KFEPRTILGTISGAKN--DLL------- 156

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE---LNASSPVGYQIALMRAEAE 220
              E        +   ++      +    + + +RL+    L+    +   + L     +
Sbjct: 157 -TPEQFAK----RASTYYEKI---VSDVYQEYQQRLLRNHSLDFDDLIMTTLQLFDRVPD 208

Query: 221 HLMKGTKG--PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
            L         I I     +  A   L+  +A       +    D       W     ++
Sbjct: 209 VLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQN--ICAVGDADQSIYRWRGADIQN 266

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       +P   +  L       +  ++    V      R               
Sbjct: 267 ILSFE-----RDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPK------------ 309

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALITAD 395
                    ++         +   EA NE +EA  +A  ++ +++         A++   
Sbjct: 310 ---------RLWTENPEGKPITYYEAMNEADEAQFVAGRIQEAIESGARRYSDFAVLYRT 360

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L +  I   I  G+          + + L  I   +D +++  ++  P  
Sbjct: 361 NAQSRVIEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKR 420

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G           A   ++L       +++ L +     +A  +               
Sbjct: 421 GIGASTIDKLVRYAAEHELSLFEALGELEMIGLSAKATGALAAFR--------------- 465

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                             L  +   +        + +    +                 L
Sbjct: 466 ----------------GQLEQWTQLQEYVSVTELVEEVLDKSGYRDMLKAERTIEAQSRL 509

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI-ITRLIDGETVKPKIEKSSTLFILGTL 634
              +E  +++  F    E  S  K+      D+ +   +D      + E+   + ++   
Sbjct: 510 ENLDEFLSVTKHF----ENASDDKSLIAFLTDLALISDLDELNGNDQTEEGDAVVLMTLH 565

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EG++P N + +       +  L      +   +           
Sbjct: 566 AAKGLEFPVVFLIGMEEGIFPHNRSLDDEDEMEEERRLAYVGITRAEEELVLTSAQM--- 622

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                 R+L  N      SR+L  +                +  +   +
Sbjct: 623 ------RTLFGNIQMNPPSRFLNEIPAHLLETVSRRQMTASRPVVSRPQ 665


>gi|110677844|ref|YP_680851.1| ATP-dependent DNA nuclease, putative [Roseobacter denitrificans OCh
            114]
 gi|109453960|gb|ABG30165.1| ATP-dependent DNA nuclease, putative [Roseobacter denitrificans OCh
            114]
          Length = 1125

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 76/810 (9%), Positives = 186/810 (22%), Gaps = 107/810 (13%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHLMKGTKGPIIIAG 234
                F       + E+                        + A     + G    I++  
Sbjct: 333  ALHRFAGSFLPLYEEQKTLRGWLDFDDLIDRARALLSDEDVAAWVLFRIDGGIDHILVDE 392

Query: 235  STGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
            +  + PA   ++  +A                V    D       +     +  +   + 
Sbjct: 393  AQDTSPAQWDVIRKLAAEFTSGEGARQEVQRTVFVVGDKKQSIYSFQGADPREFDRMQAE 452

Query: 286  TT-----YSTHPQ-----YSLAKLLDFLDIKREDVKRLGNV-----SNEMYGRSMVISKS 330
                        Q     +S       L +       L +         +  +  +  + 
Sbjct: 453  FASKIEAAEQLFQNKTLAFSFRSASAILGVVDRTFDGLTDAGFTTDEQHIAFKQTLPGRV 512

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS-IAIA-----------L 378
             + P      + +      P  +K     ++I A+    +  + IA             +
Sbjct: 513  DIWPVVEPQPSEEDRAWHDPIDRKAAHHHSVILAERVATQIKAMIAHDTIPDEKRSDGKI 572

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                 +      L+     L   +        ++I  +  + +   L    L +LL+ + 
Sbjct: 573  TRRPVQAGDFLILVQRRSVLFTEIIRACKNKDLDIAGADRLKVGGELAVRDLAALLSFLA 632

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
               D +++A+ ++ PL  +   E +             +  +   D       VL  +  
Sbjct: 633  VPEDSLSLASTLRSPLFGWSEKELFQLAHHRE-HDHLWQALRMRSDAYPETLKVLRDLRA 691

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
              +         R+         LL    ++    +    +   +   N           
Sbjct: 692  NVDFLRPYDLIERILTRHNGRRNLLARLGVEAEDGINALLSQALAYERN----------- 740

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                            +W E +   +             +  +  + ++    ++     
Sbjct: 741  -------AVPSLTGFLVWMETDDLEIKRQIDSASNQIRVMTVHGAKGLEAPIVILPDSGK 793

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
            +    +   + +      +    DT                        M + L+   A 
Sbjct: 794  RNNPVRDDIIILDDKPVWKTPANDT---------------------PGAMAAALDEIAAA 832

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
            +   +    +         +   +  E +       W QR+           +   G   
Sbjct: 833  QAAERLRLLYVALTRAEKWLIVAAAGELSKQNDT--WYQRVDAAVDAAGARLVDMHGLAV 890

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                +            +            T        L             K      
Sbjct: 891  KRHQKGDWEALPLSEANQNTTVQATLDPCFTTRAPARAPLRETVSPSDLG-GAKALPGEA 949

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
             + +      GT  H  +  L     +         +  ++  + + + L    +     
Sbjct: 950  GQDEEAAKAYGTSVHLFLEHLSAADPSDWP-----ALVDVLSDNGDPDLLRAASE----- 999

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                 + + L+               +       S    L G  DR+ ++    V   D+
Sbjct: 1000 -----AKTVLQDPNLAHLFTPDSLAEVAVTAEFGSA--RLHGIIDRL-VVSDTAVLAVDF 1051

Query: 919  KTG-DNPKKETA-QKLIDPQLSLEAAALKA 946
            KT    P +     + I  Q+     ALK 
Sbjct: 1052 KTNQTVPSQPATCPEGILRQMGAYTHALKQ 1081


>gi|153002398|ref|YP_001368079.1| DNA-dependent helicase II [Shewanella baltica OS185]
 gi|151367016|gb|ABS10016.1| DNA helicase II [Shewanella baltica OS185]
          Length = 722

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 75/690 (10%), Positives = 171/690 (24%), Gaps = 123/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+     T +A  E+R    ++ G     +  I +   +           +  L      
Sbjct: 56  SILAVTFTNKAAAEMRERVEKVAGTNMGRM-WIGTFHGLAHRLLRTHFQDA-GLPQSFQI 113

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +    ++ RLI      L    K   P           +                 +  +
Sbjct: 114 LDSDDQV-RLIKRILKSLNLDEKQYPPRQAQGYINGKKD-----------------QGLR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            + +           + L  + LKI  + + E                L+RA    L K 
Sbjct: 156 PKHI-------DAGGFPLEQNLLKI-YQVYQESCDRAGLVDFAEI---LLRAHELWLNKP 204

Query: 226 --------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                       I++     +       +  +A     A V+   D       W     +
Sbjct: 205 HLLAHYQDRFKHILVDEFQDTNAIQYAWIRVLAG--QTANVMIVGDDDQSIYGWRGAQVE 262

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           + +    +                               +  +              +  
Sbjct: 263 NLHRFLKDFP--------------------------TATTIRLEQNYRSKGNILKASNAL 296

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITAD 395
              N + +  ++   +     ++L  A NE +EA  I   +    ++       A++   
Sbjct: 297 IANNPERMGKELWTDEADGDPISLYCAFNEMDEARFIVGRINDWHEKGGNLSDCAILYRS 356

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L   G+   I  G+              L  I   +D  A   +V  P  
Sbjct: 357 NAQSRVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKDDDAAFERVVNTPPR 416

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G     + R+                                          S    +
Sbjct: 417 GIGDRTLDILRSTARQH------------------------------ELTLWQASVRLLD 446

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
           +K LA    + +   +  ++T + +              + +            +    +
Sbjct: 447 EKVLAGRAANSVRGFMDLIMTMREDTQDMVLYRMADTVIQASGLKAMYEAEKGEKAHARI 506

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              EE  T +  F    E     + N       ++              +  + ++    
Sbjct: 507 ENLEELVTAARTFELPEELEDMGELNG-----FLSHAALEAGEGQADAFTDAVQLMTLHS 561

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + + G+ EG++P              S + L+  ++   +    +       
Sbjct: 562 AKGLEFTMVFMAGVEEGIFP--------------SKMALEEGDRLDEERRLCYVGMTRAM 607

Query: 696 H-LIYTRSLRE----NNIPTIASRWLQRLL 720
             L  T +              SR+++ + 
Sbjct: 608 EKLYITYAESRRIYGREDYARPSRFIKEIP 637


>gi|58040813|ref|YP_192777.1| DNA helicase II [Gluconobacter oxydans 621H]
 gi|58003227|gb|AAW62121.1| DNA helicase II [Gluconobacter oxydans 621H]
          Length = 740

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 83/729 (11%), Positives = 192/729 (26%), Gaps = 117/729 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+R     I G+ +  L  + +   +                    
Sbjct: 61  SQILAVTFTNKAAREMRERVSAILGEPAEGL-WLGTFHAICARM---------------- 103

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  E   L   +     D    L  +  +  P       W    L  II   +    
Sbjct: 104 -LRRHAEYVGLTSSFNILDTDDQIRLLKQ--VMEPWKIDTKRWPPNQLMGIIQRWKDRGL 160

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
             + +   ++  +     LA        + + ERL+ LN        + +          
Sbjct: 161 TPDRVTPAEDSDFANGHALA------IYRAYQERLIALNTCDFGDLMLHMTEILRNQPNV 214

Query: 225 GTK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLP-GLDCHIPTAIWNTITEKS 278
             +       I++     +       +  +A   +G   +    D       W     ++
Sbjct: 215 LAQYHRIFRYILVDEYQDTNTVQYLWLRLLAKREHGPSNIACVGDDDQSIYSWRGAEVEN 274

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +      P   + +L        + +     +     GR               
Sbjct: 275 ILRFEKDF-----PGAEVVRLERNYRSTAQILAAAAGLIAHNEGR--------------- 314

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADR 396
                    +          V +I   +  EEA  +  A+     +     + A++    
Sbjct: 315 ----LGKTLRPGRDDAQGEKVQIIGVRDSDEEARIVGGAIERLRGDGHPLSEIAILMRAG 370

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
              R  +  L   GI   +  G+            + L  + +  D +A   ++  P   
Sbjct: 371 FQTRPFEERLMMIGIPYRVVGGLRFYERSEIRDCLAYLRVLSQPADDLAFERIINVPKRG 430

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G        A+       L           L                            
Sbjct: 431 VGAVAVQKLHAQARALPGPLTAAVIWQLQEGL---------------------------- 462

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                 L       +  L+       +T          +  +     +     +   +  
Sbjct: 463 ------LKGKSKDALDGLMAAFQRAKATFETEGHVVAAEQLLEDSGYL-----QMWRDDR 511

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             E    L ++   +   G         +++ +  ++D E+          + ++    +
Sbjct: 512 SVEAPGRLDNIRELLRALGEFGTLQG--FLEHVALVMDTES----ETSDDKVSLMTLHGA 565

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L FDT+ L G  EGV+P   + +   +R +         E+    A      A     
Sbjct: 566 KGLEFDTVFLPGWEEGVFPSQRSLDEGGNRAL---------EEERRLAYVGLTRARRRAI 616

Query: 697 LIYTRSLRENN--IPTIASRWLQRLLVL---GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
           +++  S R       ++ SR+++ +           F+  ++       +      +T+ 
Sbjct: 617 VLHAASRRIYANWQSSMPSRFIEEIPSEYVQLTGQAFETRRQAAAAPSMFASGPLTSTRP 676

Query: 752 PHYKRPKPF 760
             ++ P+P 
Sbjct: 677 SGFRAPRPK 685


>gi|326318047|ref|YP_004235719.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374883|gb|ADX47152.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 818

 Score = 91.9 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 67/753 (8%), Positives = 169/753 (22%), Gaps = 88/753 (11%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +     T +A +E+ +    +     +      I +   +      A    S  L     
Sbjct: 82  ILAVTFTNKAAKEMTARLSAMLPVNVRGMW---IGTFHGLCNRLLRAH-HKSAGLPATFQ 137

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            +    +L+ +  + +    D  +    +                   A  I   + E  
Sbjct: 138 ILDTQDQLSAVKRLCKQFNIDEERFPPKQM------------------AYFISGCKEEGL 179

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
           +  D+ A   +                 + + E+             +       ++   
Sbjct: 180 RPGDVDARDAD---------GRKKVELYQLYEEQCQREGVVDFGELMLRSYELLRDNDPI 230

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVA------NHPNGAIVLPGLDCHIPTAIWNT 273
               +     I++     +       +  +A             VL   D       +  
Sbjct: 231 RAHYQRRFQHILVDEFQDTNKLQYAWLKQIAGDMVDGRLVTHGSVLAVGDDDQSIYAFRG 290

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
               +                                        ++       S     
Sbjct: 291 ARVGNMQDFVREFDVR--------------------------HQIKLEQNYRSYSNILDS 324

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSA 390
            +     N+  L   +   Q     V + EA  +  EA  +   +R     +    ++ A
Sbjct: 325 ANALISHNSRRLGKNLRTTQGPGEPVRVYEAPTDLAEAQWMVDEIRQLARNDGFERREIA 384

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L    +   +  G+            + L  +   +D  +   +V
Sbjct: 385 VLYRSNAQSRVIESALFNAAVPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFMRVV 444

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P    G     + +        +L    ++       +L                   
Sbjct: 445 NFPPRGIGARTVEVLQDAARQAGCSLHDAVSAVPGKAGANLGAFVAMVDVMREQTQGQTL 504

Query: 511 RLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
           R        +  LV+H          +  L        S                 +   
Sbjct: 505 RGIIGQMLESSGLVEHYRAEKEGADRLENLDELINAAESFVTQEGFGRDAVAL--PVDEH 562

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                +   +   +     +       ++  +    +       +T              
Sbjct: 563 GASLRQSPASQGIDPSLPVVDEPLPVGVDADTGETLSP--LAAFLTHAALEAGDNQAQAG 620

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNE--GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
              + ++    S+ L FD + +GG+ E       + +    L    +      T  +   
Sbjct: 621 QDAVQLMTVHASKGLEFDAVFIGGMEEGLFPHENSMSDRDGLEEERRLMYVAITRARKRL 680

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL---QRLLVLGGTDFFDNLKKRGQCYL 739
             +H        +     +S   + +P  A +W+   Q+                G  + 
Sbjct: 681 YLSHSQTRLLHGQTRYNIKSRFFDELPEAALKWITPKQQGFGSFAPQSGGRGGSAGTPWG 740

Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
            +       T        +  PP        + 
Sbjct: 741 GFGSGARSETFASPPVPAQKAPPAYGLRVGLAV 773


>gi|84514936|ref|ZP_01002299.1| ATP-dependent DNA helicase, UvrD/Rep family [Loktanella vestfoldensis
            SKA53]
 gi|84511095|gb|EAQ07549.1| ATP-dependent DNA helicase, UvrD/Rep family [Loktanella vestfoldensis
            SKA53]
          Length = 1113

 Score = 91.9 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 92/889 (10%), Positives = 224/889 (25%), Gaps = 132/889 (14%)

Query: 109  LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
             L+L   + ++ +   D         P            L  ++  +++++    +    
Sbjct: 269  DLQLLEGVFLFGDSAKDPFGPKIGSFPTKALREAH--PELIADIDILMELVAGARQDRMA 326

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP----VGYQIALMRAEAEHLMK 224
            L AL              F +     +  R + + +          +  L        + 
Sbjct: 327  LAALDRTL------ALYAFGRAFVPAYEARKLAMGSLDFDDLISKARALLTDPAVAQWVL 380

Query: 225  GTKG----PIIIAGSTGSIPATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIW 271
                     +++  +  + PA   ++ T+         +       V    D       +
Sbjct: 381  FRLDGGIDHVLVDEAQDTSPAQWDVVETLTQEFATGAGSRPNRERTVFVVGDKKQSIYSF 440

Query: 272  NTITEKSTNITSSNTTYS----------THPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                  + +   ++   +          T   +S       L +                
Sbjct: 441  QGADPAAFDKMKAHFRAAHKAIGKPFEATSLDHSFRSSQAVLSVVDA---TFTGDQAAGM 497

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV-ALIEADNEREEAISIAIAL-- 378
              ++                  I   K  + +  +  V    +AD+  + A  IA  +  
Sbjct: 498  DDALTHIAFKDRMPGRVDLWPVIEAAKTEDNRPWYQPVDQPGDADHHVQMAQRIADQISH 557

Query: 379  -----------------RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
                             +           L+    +L   +       G+NI  +  + +
Sbjct: 558  MIAHETIPVEDGNTGTYKRRRITAGDVLILVQRRSDLFAEIIRACKAAGLNIAGADRLRV 617

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
               L    L +LL+ +    D +++A  ++ PL  +   + +        +       + 
Sbjct: 618  GAELAVKDLAALLSFLALAEDDLSLAAALRSPLFGWSEQDLFTLAHHRGDKKFLWEALRK 677

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
            S     L   VL+ +  + +        +R+         LL     +    +    +  
Sbjct: 678  SAHHETLA--VLNDLRGKADFLRPYDLIARILTRHDGRRKLLARLGPEAEDGIDALLSQA 735

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
             +                                W + +   +        +    +  +
Sbjct: 736  LAYEQT------------------GVPSLTGFLTWMQTDDLEVKRQMDSQGDKIRVMTVH 777

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
              + ++                  + + IL    +R  +F   IL   +  +W   +A  
Sbjct: 778  GAKGLE------------------APIVILPETMTRKKDFKGEILPAPDCVIWKTISAA- 818

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
                  M +  +   A++   +    +         +   +  +      +      ++ 
Sbjct: 819  --TPASMVTLRDAVLAKQDEERLRLLYVAMTRAEKWLIIGASGDVGEGMES---WYNIVA 873

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
             G           G   +     LD+       K     P +            +     
Sbjct: 874  AGMKKRQAGAAMSGDLQVQRVAHLDWNGLDLVPKDAVTAPDVIVPEFGPLPDIARAKTIS 933

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM--KQII 839
            P  +   ++L        + D D  +RGTL H ++  L +            L+     +
Sbjct: 934  PSELLGAKVL---PGDIAEDDADAKERGTLIHLLLEHLPRATPADRAALGYALVPTDTAL 990

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
                 +    P +  +W                            +P    +  +G  + 
Sbjct: 991  TDSVIQLLDQPALAHLWNDDA---------------------LTEVPITADLPDLG-RIH 1028

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKA 946
            G  DR+ L  +  V   DYKT              +  Q ++  AAL+ 
Sbjct: 1029 GTIDRLILTPT-TVLAVDYKTNRIVPDQPAHTPLGVLRQQAVYCAALRQ 1076


>gi|288942739|ref|YP_003444979.1| UvrD/REP helicase [Allochromatium vinosum DSM 180]
 gi|288898111|gb|ADC63947.1| UvrD/REP helicase [Allochromatium vinosum DSM 180]
          Length = 732

 Score = 91.9 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 73/738 (9%), Positives = 176/738 (23%), Gaps = 123/738 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+     T +A +E+RS   E+ G     +  + +   +      A    +  L      
Sbjct: 56  SILAVTFTNKAAREMRSRLDEMLGTPVGGM-WVGTFHGLAHRFLRAHWQDA-GLPQQFQI 113

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +    +L RLI     ++        P                   +   I+  + E  +
Sbjct: 114 LDSDDQL-RLIKRLLKEMQIDEARWPPR-----------------QIQGFINRQKDEGLR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKI----ASKYWTERLVELNASSPVGYQIA-----LMR 216
                               DF++       + +    +   +       +        R
Sbjct: 156 P------------HHLSETGDFVQDRMIAVYREYEAARLRAGSLDFADLLLCTLELLRER 203

Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
           A+  H  +     I++     +       +  +A       +    D       W     
Sbjct: 204 ADILHHYQQRFAHILVDEFQDTNAIQYAWLRLLAG--GDNHLFAVGDDDQSIYGWRGAKV 261

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++            +P     +L          +     +      R             
Sbjct: 262 ENIQSF-----QRDYPTTRTIRLEQNYRSTGNILAAANALIAHNPAR------------- 303

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--SALITA 394
                   L   +         +    A NE +EA  +   +R  + +  ++   A++  
Sbjct: 304 --------LGKNLWTQDSAGEPIRRYTAFNEVDEARFVVERIRRFVQDGHRRDECAILYR 355

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R  +  L + GI   +  G+            + L  I   ND  +   +V  P 
Sbjct: 356 TTAQSRLFEEALIQAGIPYRVYGGLRFFERAEIRDALAYLRLIANPNDDASFERVVNLPT 415

Query: 455 AKFGFPEKYL-SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
              G     L      A  +   R  +       L     + +    +            
Sbjct: 416 RGIGERTVELVREQARAAGVSLWRAARELSTSGALSPRASNALRGFLDLIESQRAA---- 471

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
             +      + D +++    +  +K +K+         D  +     ++ V   E     
Sbjct: 472 -REGRALSEIADRVIEATGLIEHFKNSKDGKGQ-----DRIENLEQLIETVSRFEQDLPD 525

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                                      +       +                 ++ ++  
Sbjct: 526 E--------------------------DGDPLGAFLAHAALEAGEAEADPFEDSVQLMTL 559

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + L GL EG++P + + +                 +   +    +     
Sbjct: 560 HSAKGLEFPLVFLAGLEEGLFPHSLSAD--------------DPARLEEERRLCYVGLTR 605

Query: 694 T-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             R L  T++               R L     +  + ++  G     +  ++  +    
Sbjct: 606 AMRQLYLTQAESRQLYGRKECPGPSRFLREIPPELIEEVRGGGITRPAFAARVPASRSVA 665

Query: 753 HYKRPKPFPPLEAQPRTY 770
                        +    
Sbjct: 666 SSPAKSGAGAQAPEGYRL 683


>gi|290961676|ref|YP_003492858.1| hypothetical protein SCAB_73381 [Streptomyces scabiei 87.22]
 gi|260651202|emb|CBG74323.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 307

 Score = 91.9 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 88/288 (30%), Gaps = 34/288 (11%)

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                    +  +P     A P + S S     +  P     R I +L          +  
Sbjct: 8    TVPAPVGGEDARPVERAAAPPASLSPSRASDFMQCPLLYRFRVIDRLPEK-----PSEAA 62

Query: 807  DRGTLFHNIITELIKKRINKNTP-----------EINHLMKQIIDSHFEKENLPPHIDII 855
             RGTL H ++  L      + T            +     +  ++  F  +         
Sbjct: 63   TRGTLVHAVLERLFDAPAAERTAPRARSLVPGQWDRLRETRPEVEELFADD-EEGERLAR 121

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
            W     ++   +   E+  +  +E     +  +  +ES G+ L G  DR+D+  +G V I
Sbjct: 122  WLAEAEQLVERWFTLEDPTR--LEPAERELFVEAELES-GLRLRGIIDRVDVAPTGEVRI 178

Query: 916  TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
             DYKTG  P+     +    Q+   A  +       +       L  + L     +    
Sbjct: 179  VDYKTGKAPRP-EYAEGALFQMKFYALVVWR-----LKRVVPRRLQLVYLGSGDVLTYDP 232

Query: 976  NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
                        E+  + L+ +   ++   +      R ++      +
Sbjct: 233  VIAD-------LERVERKLLALWEAIRMATESGDWRPRPTK-LCGWCD 272


>gi|225570785|ref|ZP_03779808.1| hypothetical protein CLOHYLEM_06888 [Clostridium hylemonae DSM 15053]
 gi|225160247|gb|EEG72866.1| hypothetical protein CLOHYLEM_06888 [Clostridium hylemonae DSM 15053]
          Length = 1204

 Score = 91.9 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 108/960 (11%), Positives = 233/960 (24%), Gaps = 198/960 (20%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN----LADIIDIIETEEKKWED 168
            A L+   R+++   + D+  +     P      + L K     LA ++D      ++ + 
Sbjct: 295  AALVKAARDEVKKTVNDVAAQYFYQAPDGVLEDMALCKKAMAVLASLVDQFAARFEEQKR 354

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
               +    +      A   L +          E ++ +P        +   E        
Sbjct: 355  TQNMI--DFSDMEQYALQILAV---------KEGDSFAPTAVAGEYQQRFRE-------- 395

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNG-AIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
             I+I     S      ++++V+    G   +    D       +     +          
Sbjct: 396  -IMIDEYQDSNLIQETILTSVSTVSQGKNNIFMVGDVKQSIYRFRLSRPELFMEKFHTYD 454

Query: 288  YSTHPQYS---LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD- 343
                 +             ++          +     G      ++ L          + 
Sbjct: 455  TKDSSRQRIDLHKNFRSRSEVLETVNYIFEQIMTPALGGIRYDDEAALYTGADYGDGGEE 514

Query: 344  --------ILENKIPNIQKCFSDVALIEADNERE-EAISIAIALRMSLDEN--------- 385
                    +++  +              A ++RE EA +IA  +R  LD           
Sbjct: 515  SSNNTEILLVDTDLSPFADDEKKEKKEAAPSDRELEARAIAGRIRKLLDTQKVLDKAAGT 574

Query: 386  -----KKKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                      ++T        V  E L + GI            T    +L   L  +  
Sbjct: 575  YRKARYSDIVILTRSVKGFSDVFSEVLNKEGIPTYAGTREGYFETQEIGVLLDYLRVLNN 634

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                + +A ++K P       E                                   A  
Sbjct: 635  RKQDIPLAAVLKSPFLGLTDEEM----------------------------------ADI 660

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
            KN      +   +              +  C+  +  ++     T  +  +    K T  
Sbjct: 661  KNKAGDLPFHEAVPAYASREETAAARRLKACLDMMEHFRKKVPYTPIHELLHMILKETG- 719

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-LIDGETV 618
                              +   K L+        T      + I +I+ + +  +D    
Sbjct: 720  ----YGDYTAAMPGGEQRKANLKMLAEKAKAFESTSYKGLFHFIRYIEQLQKYDVDYGEA 775

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
              + E+S T+ I+   +S+ L F  + + G+ +     +   +  L   +   L+    E
Sbjct: 776  SLEDEQSDTVRIMTIHKSKGLEFPIVFVSGMGKQFNMMDARSSVVLHARLGVGLDAVDTE 835

Query: 679  KYI--------------------GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
                                    +    +      +  +      +N    + S  L  
Sbjct: 836  LRTKSPSLLKRVIQKEEALDSLGEELRVLYVALTRAKEKLIVTGAVKNAGKKMDSYGLT- 894

Query: 719  LLVLGGTDFFDNLKKRGQCYLDW--TRKLDYTTKQP-----------------HYKRPKP 759
                           R   YLDW     +  T + P                  Y R + 
Sbjct: 895  -KRRSERQLSFTQLGRAGSYLDWILPAMMRRTEEIPVDIELVTAKDLVRESAGEYIRNRL 953

Query: 760  FPPLEAQPR--TYSFSEIKQLINDPYAVYARRILK------------------------- 792
               +  +         ++  LI + ++      L                          
Sbjct: 954  TAEMLRRWDTERVYDGQMHTLIEEQFSYEYPYSLSKNRKLKYTVSELKKRAYMAEEAGEL 1013

Query: 793  ----------LDFIPHFKKDPDRTDRGTLFHNIIT--ELIKKRINKNTPEINHLMKQIID 840
                      +       ++     RGT +H ++   +      + +       ++    
Sbjct: 1014 LYEEEEVVPLIPEFLKEGEELTGASRGTAYHRLLELLDFTADHADASLKAEIIRLRDEGK 1073

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ----SSIEKIFVNIPAKM------- 889
                        D+        I   FL      +    +  ++++   P  +       
Sbjct: 1074 ---------MTADMAECIRTEDILG-FLNCGAGRRMREAAGNQRLYKEQPFVLGTDAREM 1123

Query: 890  ---AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
                 E   I + G  D       G + + DYKT         ++    QL   A AL+ 
Sbjct: 1124 YPDEAEGELILVQGIIDVYFEEADG-LVVLDYKTDRVKSAGELKEKYHAQLDYYARALEQ 1182


>gi|260424687|ref|ZP_05732964.2| ATP-dependent DNA helicase PcrA [Dialister invisus DSM 15470]
 gi|260402848|gb|EEW96395.1| ATP-dependent DNA helicase PcrA [Dialister invisus DSM 15470]
          Length = 746

 Score = 91.9 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 85/726 (11%), Positives = 183/726 (25%), Gaps = 122/726 (16%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVV 85
             L     Y     +   ++     T +A QE+R     + G ++       + +     
Sbjct: 44  KALTCRIAYMLEQGIRPQNILAITFTNKAAQEMRERVHHLVGAEADKLW---MYTFHSFG 100

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                 ++                  +       +  + +I+K+L  +     P +    
Sbjct: 101 ARFLRREINNH-------PPFTDKFTIYDSDDS-KQMIKNILKELNLDDKQYPPRNIQAR 152

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
           I  AKN               E   A  +  +          +      + + + + NA 
Sbjct: 153 ISAAKNALQ----------GPESFRAEASGNFYNEK------IADVYDLYDKYMKQNNAL 196

Query: 206 SPVGYQIALMRAEAE----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                  A  +  A+       +     I+I     +  A   +   +A       +   
Sbjct: 197 DFDDLLFATTKLLADETIRRRWQDHFHYILIDEYQDTNHAQYLMAKYIAG--KSQNICAV 254

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            D       W     ++            +P   + KL       +  +     V     
Sbjct: 255 GDADQSIYSWRGADLRNIMDFR-----EDYPSAQIIKLEQNYRSTQTILNAANAVIKNNV 309

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            R                     LE ++         +    A +E  EA  I  ++   
Sbjct: 310 ER---------------------LEKRLWTENNPGVHLQKYAASDEHNEADFIVESMMKE 348

Query: 382 LDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             EN       A++      +R ++  + + GI   +  G           + + L  + 
Sbjct: 349 HGENHVPYGKMAVLYRMNAQSRVIEESMVKRGIAYTMVGGTRFYDRAEIRDMLAYLKLVA 408

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
              D +++  ++  P    G             E            IM L+   +   A 
Sbjct: 409 NFRDDISLMRIINVPRRGIGQTTMQKLS-----EFSKQGNMSMFEGIMSLEESDIPVPAR 463

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
            K         S L+   +     L+  I+     L                        
Sbjct: 464 TKLQKFSALIFSFLNASTEGDVFTLIQKIMTDTEYLSVL--------------------- 502

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                   D   +       E          +  E G           + + ++     V
Sbjct: 503 ----QQSSDPQAQSREENLGELLNVAKDFTQEQPEGG---------LPEFLEKVALVNDV 549

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
               E+   + ++    ++ L F  + + G++EG++P   +              L    
Sbjct: 550 DSFEEQDDKVTLMTIHSAKGLEFPIVYMAGMDEGIFPGVRS--------------LMDET 595

Query: 679 KYIGQAAHDFEMANGTRH-LIYTRSLRENN----IPTIASRWLQRLLVLGGTDFFDNLKK 733
               +    +      +  L  T S          P + SR+L+ + V    +   N  +
Sbjct: 596 ALEEERRLCYVAITRAKEKLYLTTSAVRTMYGQVKPYVESRFLKEIPVDLLDEIRGNSSE 655

Query: 734 RGQCYL 739
             +  L
Sbjct: 656 AKRRTL 661


>gi|86145656|ref|ZP_01063986.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio sp. MED222]
 gi|85836627|gb|EAQ54753.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio sp. MED222]
          Length = 1158

 Score = 91.9 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 110/970 (11%), Positives = 241/970 (24%), Gaps = 135/970 (13%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+ E  +  G  + I      L           +L         +   
Sbjct: 34  QILVQSPGMSQWLKMELAKEFGVAANID---FPLPATFIWDMFTQVLPDVPKRSAFNKEA 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW- 166
              +L  L+        D    L  +  L      +    LA+ +ADI D       +W 
Sbjct: 91  MTWKLMSLLPA----KLDHPDFLPLQRYLENDEDDSKLYQLAEKIADIFDGYLVYRPEWM 146

Query: 167 ------EDLHAL--KNEKYGMWWLLAADFLKIASKYWTERLVE-LNASSPVGYQIALMRA 217
                 E +  L     +    W             + + L +  +           + A
Sbjct: 147 AMWEAGEPVAELVDDEGQQAHPWQPILW-----QALYEQTLSQGQSKYHRGNLYHDFIEA 201

Query: 218 EAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN--- 272
            A    K       + + G +   P     +  +    +  ++      H    I +   
Sbjct: 202 LANQQGKLQHLPKRLFVFGISSLPPRYMDALKALGEQIDVHLMFTNPCQHYWGDIRDRKY 261

Query: 273 ----------------------TITEKSTNITSSNTTYSTHP-QYSLAKLLDFLDIKRED 309
                                   T    +   +N     H  Q     LL  +     D
Sbjct: 262 LARVEAQRRKQFVLVDGLPKLEGETSPLKDGIEANIEDELHTSQAVGNSLLASMGKLGRD 321

Query: 310 VKRLGNVSN----------EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
              L + S+          E       +    L  +     +     N    ++     +
Sbjct: 322 NLFLLSQSDCEEHEFFIDVERDNLLHQLQADILQLEEHQDDHILDSSNHKQVVELGDRSL 381

Query: 360 ALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFG 410
            +    +   E   +   L    D N     +   ++ +D N        +         
Sbjct: 382 TVHACHSPMREVEVLHDQLLAMFDTNPTLKPRDIIVMVSDINAYSPAIQAVFGNAPGERY 441

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAK 468
           I   IS       +   +    L+           +  L++ P  +A+FG  E    +AK
Sbjct: 442 IPYSISDRTADQESPILTAFMQLVALPNTRCLASELLELLEIPAMMARFGIDEFQFEQAK 501

Query: 469 NALELVALRGNKNSYDIMD-----------LKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
             +E   +R   ++    +           L  +    +    +++              
Sbjct: 502 QWVEEAGIRWGVDASTATEFDLPATEQNTWLFGIQRMLLGYAMSDSAGLFETEHSPIAAY 561

Query: 518 ELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                +   +   +          +       SI  W ++ +  + +    E      L 
Sbjct: 562 NEVQGINAELAGKLAHFIDRIAHYRQRLTETQSIDMWREILLQMIDDFFAVELEGEVVL- 620

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            +     LS L  ++ +     + +       +   + G  +  +      +     +  
Sbjct: 621 -KSIRDALSQLNEQLDDALYEQELSPSIIYQYLNNKLSGARISQRFLAG-QVNFCTLMPM 678

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           R + F T+ L G+N+GV+P++     F     ++    ++            E     + 
Sbjct: 679 RSIPFKTVCLLGMNDGVYPRSMPPEGFDLMNGRTRPGDRSRRDDDRY--LFLEAMMSAQE 736

Query: 697 -LIYTRSLRE--NNIPTIASRWLQRL--------------------------LVLGGTDF 727
            L  +   R   +N   + S  +  L                            +     
Sbjct: 737 CLYISYVGRSIKDNTERVPSVLVSELIEYCQQNYCLSDDQALPSDDSGIKLTQAISFEHT 796

Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRP------------KPFPPLEAQPRTYSFSEI 775
                       D +  L Y  +                     +      P      E+
Sbjct: 797 MTPFSPAAFTQGDASHVLSYAKEWLPAANRTGERSGEFNRALDDYLLGATYPLELDLVEL 856

Query: 776 KQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
           ++    P   +  R LK+     +P  + D      G     +   L++  ++       
Sbjct: 857 QRFWRLPVQYFFNRRLKVVFEPPLPVMEDDEPFVLNGLESFQLKDALLQVLLDHPEGADE 916

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI--PAKMA 890
            +   + +   +          I        +   L  E +  S   +  + +     + 
Sbjct: 917 AVRLFVSEQKAQGRLPVGAFGDIEFETNRVQAED-LAKEIRFVSGSPQQDLEVNIEFDVL 975

Query: 891 IESIGIHLTG 900
            E   + L G
Sbjct: 976 GEGKPVRLMG 985


>gi|329297035|ref|ZP_08254371.1| DNA-dependent helicase II [Plautia stali symbiont]
          Length = 720

 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 76/684 (11%), Positives = 160/684 (23%), Gaps = 115/684 (16%)

Query: 50  YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--VSN 105
              T +A  E+R    ++ G          I +   +      A  L +        + +
Sbjct: 60  VTFTNKAAAEMRHRIDQLIGTSQGGMW---IGTFHGLAHRLLRAHHLDAGLPQDFQILDS 116

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  L RLI                                           + E  +
Sbjct: 117 EDQLRLLKRLIKAMNLDEKQWPARQGMWYINGK---------------------KDEGLR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + + +  N     W            + + E              +             
Sbjct: 156 PKHIESYGNPVEQTWLR--------IYQAYQEACDRAGLVDFAELLLRAHELWLNKPQIL 207

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A      I++   D       W     ++  
Sbjct: 208 NHYRERFSNILVDEFQDTNNIQYAWIRMLAGDSGRVIIV--GDDDQSIYGWRGAQVENIQ 265

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                           LG  +  +       +      +     
Sbjct: 266 RFLQDF--------------------------LGAETIRLEQNYRSTNNILKAANALIAN 299

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398
           N   L  ++         ++L  A NE +EA      ++   +     +  A++      
Sbjct: 300 NNGRLGKELWTDGSDGEKISLYCAFNELDEARFAVNRIKTWHENGNALQDCAILYRSNAQ 359

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L +  I   I  G+            + L  +   ND  A   +V  P+   G
Sbjct: 360 SRVLEEALLQGSIPYRIYGGMRFFERQEIKDALAYLRLLANRNDDAAFERVVNTPVRGVG 419

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                + R                               T +         +R   + K 
Sbjct: 420 DRTLDVVR------------------------------QTAREQQLTLWQATRALLQSKA 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           LA      + +    +    T       ++      K +   L        +    +   
Sbjct: 450 LAGRAASALQRFCELVDALATETAELPLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENL 509

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           EE  T +  FS   E    +   A      +                  + ++    ++ 
Sbjct: 510 EELVTATRQFSYQDEDEDLMPLQAFLSHAALEAGEGQADKWQ-----DAVQLMTLHSAKG 564

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F  + + G+ E           F S++   +      E+ +        M   T    
Sbjct: 565 LEFSQVFIVGMEE---------GMFPSQMSLDEGGRLEEERRLAYVGVTRAMEKLTLTYA 615

Query: 699 YTRSLRENNIPTIASRWLQRLLVL 722
            TR L    +    SR++  L   
Sbjct: 616 ETRRLYGKEVYHRPSRFIGELPEE 639


>gi|254516482|ref|ZP_05128541.1| putative UvrD/REP helicase [gamma proteobacterium NOR5-3]
 gi|219674905|gb|EED31272.1| putative UvrD/REP helicase [gamma proteobacterium NOR5-3]
          Length = 1055

 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 98/875 (11%), Positives = 219/875 (25%), Gaps = 64/875 (7%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            D+  +   A       ++      +   +   LI   R  L +          LS  +  
Sbjct: 195  DLDRQLLNAIEQALDGIDTDTDGTKVTGKYVSLITGVRAALYNDRATWPEWLSLSKEMPG 254

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
            A +   A+ +ADI        K  ED+       +     +AAD L  A +    +   +
Sbjct: 255  AKSKPYAEPIADIAIDYAKHPKLHEDIRFFAVSAF----EIAADSLS-AYQLLKTQKGLI 309

Query: 203  NASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
            +          L+         K     +++     + P    L   ++       V+  
Sbjct: 310  DFVDQEQRLYQLLDHPTVRETLKEELQLLMVDEFQDTSPIQLALFLKLSQLAE--QVIWV 367

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
             D       +               T   +    L                L   +    
Sbjct: 368  GDIKQSIYGFRGSDPTLMAAVVKRVTDEGNAPEILENSWRSTPELVAYTNNLFAPAFTDS 427

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
             R   ++        +D     +   +  N +K    +A+        +   I    ++ 
Sbjct: 428  LRPEQVTLKPARKSFTDNPAVTLWRLQESNKEKRARALAVGVTSLLESKPTVIDKDSQLP 487

Query: 382  LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
               N    A++         V   L+   + I       L  T    +  + L  +    
Sbjct: 488  RTANYSDVAILCRTHTNLDAVATALSEAKLPIRY-KRPGLLATPEGCLALACLRRLIDPL 546

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
            D +A A ++   L++   P+ ++++    LE              D        +   + 
Sbjct: 547  DTLASAEILS--LSECESPDNWIAQRIAYLE--------------DTDQKPHQWLEDDET 590

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                     R+          L   I         ++           +++   L     
Sbjct: 591  GPIAALKAQRIRLPFLTPVETLRLAIDAGNVRQSVFRWGPTEQRSQHRLNNLAALLGHAE 650

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            + +     +  P       G  L        E  +     +   I ++T         P 
Sbjct: 651  EYMNQCSSQNQPA---TAAGLVLWLYQLAQAEQDTQATGGSENAIQLVTHHGAKGLEWPF 707

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK----TA 677
            +        L      L    +     L+  +  +     P  + +  + ++L      +
Sbjct: 708  VIAMDLDAKLKPRLWGLTVLPSPHAIDLDNPLANRTLRYWPTFAGLQSAKISLLDDIAAS 767

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLREN----NIPTIASRWLQRLLV-LGGTDFFDNLK 732
            ++     A + + A    ++  TR         N       W+  L              
Sbjct: 768  DEGELAMAQELQEAKRLLYVSLTRPRDGLILTMNKNDEDGEWMNTLGADWMLPTTETLEL 827

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP--RTYSFSEIKQLINDPYAVYARRI 790
              G        +L  +  +      +P                     I    +     +
Sbjct: 828  PDGSTIPSAVIELVESEAEITLTPYRPTWLSTTASLVGKLPLRLSPSSIPPNPSATIGEV 887

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
            ++         + D    G+  H +I   I  + +              +   +   +  
Sbjct: 888  IEFGERLEITGEYDPATLGSALHAVIATTILGQNS-------------TERVLQDHGVDS 934

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
             I I           + +E   +        +   P     +   I + G+ D +   + 
Sbjct: 935  VISIEAADKCTNRLMNTIE---ERFKPFA-YYTEYPIHYTTDEGQI-VNGWIDLLLETED 989

Query: 911  GFVDITDYKTGDNPKKE----TAQKLIDPQLSLEA 941
            G   + D+K   +P+ +            QL+  A
Sbjct: 990  G-FVLIDHK--ASPRAKSDWAEIALGYSGQLAAYA 1021


>gi|304410803|ref|ZP_07392420.1| DNA helicase II [Shewanella baltica OS183]
 gi|307305026|ref|ZP_07584776.1| DNA helicase II [Shewanella baltica BA175]
 gi|304350700|gb|EFM15101.1| DNA helicase II [Shewanella baltica OS183]
 gi|306912428|gb|EFN42852.1| DNA helicase II [Shewanella baltica BA175]
          Length = 722

 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 75/690 (10%), Positives = 172/690 (24%), Gaps = 123/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+     T +A  E+R    ++ G     +  I +   +           +  L      
Sbjct: 56  SILAVTFTNKAAAEMRERVEKVAGTNMGRM-WIGTFHGLAHRLLRTHFQDA-GLPQSFQI 113

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +    ++ RLI      L    K   P           +                 +  +
Sbjct: 114 LDSDDQV-RLIKRILKSLNLDEKQYPPRQAQGYINGKKD-----------------QGLR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            + +           + L  + LKI  + + E                L+RA    L K 
Sbjct: 156 PKHI-------DAGGFPLEQNLLKI-YQVYQESCDRAGLVDFAEI---LLRAHELWLNKP 204

Query: 226 --------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                       I++     +       +  +A     A V+   D       W     +
Sbjct: 205 HLLAHYQDRFKHILVDEFQDTNAIQYAWIRVLAG--QTANVMIVGDDDQSIYGWRGAQVE 262

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           + +    +                               +  +              +  
Sbjct: 263 NLHRFLKDFP--------------------------SATTIRLEQNYRSKGNILKASNAL 296

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITAD 395
              N + +  ++   +     ++L  A NE +EA  I   +    ++       A++   
Sbjct: 297 IANNPERMGKELWTDEADGDPISLYCAFNEMDEARFIVGRINDWHEKGGNLSDCAILYRS 356

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L   G+   I  G+              L  I   +D  A   +V  P  
Sbjct: 357 NAQSRVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKDDDAAFERVVNTPPR 416

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G     + R+                                          S    +
Sbjct: 417 GIGDRTLDILRSTARQH------------------------------ELTLWQASVRLLD 446

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
           +K LA    + +   +  ++T + +              + +   +        +    +
Sbjct: 447 EKVLAGRAANSVRGFMDLIMTMREDTQDMVLYRMADTVIQASGLKVMYEAEKGEKAHARI 506

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              EE  T +  F    E     + N       ++              +  + ++    
Sbjct: 507 ENLEELVTAARTFEMPEELEDMGELNG-----FLSHAALEAGEGQADAFTDAVQLMTLHS 561

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + + G+ EG++P              S + L+  ++   +    +       
Sbjct: 562 AKGLEFTMVFMAGVEEGIFP--------------SKMALEEGDRLDEERRLCYVGMTRAM 607

Query: 696 H-LIYTRSLRE----NNIPTIASRWLQRLL 720
             L  T +              SR+++ + 
Sbjct: 608 EKLYITYAESRRIYGREDYARPSRFIKEIP 637


>gi|54026969|ref|YP_121211.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
 gi|54018477|dbj|BAD59847.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
          Length = 842

 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 92/767 (11%), Positives = 201/767 (26%), Gaps = 85/767 (11%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +        ++P     +     T +A  E+R     + G ++  +  + +  
Sbjct: 80  TAVLTRRIAYLLAARDVSP---GQILAITFTNKAAAEMRERVTGLVGPRAATM-WVSTFH 135

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                       L   LN   S               R  L  I +DL  ++        
Sbjct: 136 SSCVRILRMQAALLPGLNSNFSIYD--------ADDSRRLLTMISRDLDIDTKKYS---- 183

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                 A+ L   I  ++ E    E   A           L A       +        L
Sbjct: 184 ------ARLLVTAISNLKNELIGPEQASADAESDESELPGLVARVYTEYQRRLRAA-NAL 236

Query: 203 NASSPVGYQIALMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA---- 256
           +    +G  +AL++   +     +     +++     +  A   L+  +  H + A    
Sbjct: 237 DFDDLIGETVALLQNHPQVAEYYRRRFRHVLVDEYQDTNHAQYVLVRELVGHHSAADDTE 296

Query: 257 ------IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                  +    D       +   T ++      +   +             L+      
Sbjct: 297 DAVPPSELCVVGDADQSIYAFRGATIRNIEEFERDFPDAETIL---------LEQNYRST 347

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
           + + + +N +  R+    +  L  D+ +                    +    ADNE +E
Sbjct: 348 QNILSAANAVIARNEGRREKRLWTDSGEGDL-----------------IVGYVADNEHDE 390

Query: 371 AISIA---IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
           A  +A     L    + N    A+     N +R ++    R G+   +  G+        
Sbjct: 391 ASFVAREIDRLVDQGEANYGDVAVFYRTNNNSRALEEIFIRMGLPYKVVGGVRFYERKEV 450

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             + + L  +   +D +++  ++  P    G   +           +             
Sbjct: 451 RDIVAYLRVLENPDDAVSLRRILNTPRRGIGDRAEACVAVHAEQRGIGFAA--------A 502

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
           L+     ++A                 E+   A    D     +  +V    ++      
Sbjct: 503 LRDAAEGKVALLNTRAQRAIAGFLDLLEEIRAAGEQADADFPDVGNVVEAVLDRTGYRAE 562

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
           L  SD  +     L N+                    +     + E              
Sbjct: 563 LEASDDPQD-GARLDNLNELVSVAREFSSEAYNNAVAAREEGILPEQAEGEPDPGSLAAF 621

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
           +    +  +T +   E +  + ++    ++ L F  + + G  +G +P   A        
Sbjct: 622 LERVSLVADTDQIPDEGAGVVTMMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPTELA 681

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT-- 725
            +  L      +   +       A         RS     +    SR+LQ +        
Sbjct: 682 EERRLAYVGITR--ARQRLYLTRA-------VVRSGWGQPVSNPESRFLQEIPDHLIEWR 732

Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
               +   RG         L+           +P P +  +      
Sbjct: 733 RLEPSPATRGIRKRGGDEGLER-DWTRGDGWSEPRPGVRDRGPRRPA 778


>gi|254773951|ref|ZP_05215467.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 710

 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 75/720 (10%), Positives = 195/720 (27%), Gaps = 84/720 (11%)

Query: 44  LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           +  V     T +A  E+R   + + G ++  +  + +              L       +
Sbjct: 1   MGQVLAITFTNKAAAEMRERVVRLVGNRARAM-WVSTFHSTCVRILRNQASL-------I 52

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
             +     +       R  L  I +D+  +     P            LA+ I  ++ E 
Sbjct: 53  EGLNSNFSIYDADDS-RRLLQMIGRDMGLDIKRYSPRL----------LANAISNLKNEL 101

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                  A   +         A       +        L+    +G  +A++RA  +   
Sbjct: 102 IDPAAAVANLTDDSDELSRTVASVYGEYQRRLRAA-NALDFDDLIGETVAVLRAFPQIAQ 160

Query: 224 --KGTKGPIIIAGSTGSIPATARLMSTV-----ANHPNGAIVLPGLDCHIPTAIWNTITE 276
             +     +++     +  A   L+  +      +      +    D       +   T 
Sbjct: 161 HYRRRFRHVLVDEYQDTNHAQYVLVRELVGTDTEDGVPPGELCVVGDADQSIYAFRGATI 220

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +   +T            L+      + + + +N +  R+            
Sbjct: 221 RNIEDFERDYPDATTIL---------LEQNYRSTQNILSAANSVIARN------------ 259

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALIT 393
                +   + ++         +    ADNE +EA  +A    AL    +      A+  
Sbjct: 260 -----SGRRDKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAQKGEITYNDVAVFY 314

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              N +R  +    R GI   +  G+          + + L  +    D +++  ++  P
Sbjct: 315 RTNNSSRSFEEVFIRAGIPYKVVGGVRFYERKEIRDIIAYLRVLDNPGDAVSMRRILNTP 374

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G   +                  +  D +   +     +   +    +  +   L 
Sbjct: 375 RRGIGDRAEACVAVYAEN------TGASFADALVAAAEGKVPMLNSRAEKAIAGFVELLD 428

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +    L   L D +   +      +  ++ST                L  +         
Sbjct: 429 DLRGRLDDDLGDLVESVLERTGYRRELESSTDPQE------------LARLDNLNELVSV 476

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-IDGETVKPKIEKSSTLFILG 632
              F  +    ++L   +         +     + + R+ +  ++ +   + +  + ++ 
Sbjct: 477 AHEFSTDRANAAALDESLDAADDEDVPDTGVLAEFLERVSLVSDSDEIPEDGAGMVTLMT 536

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L F  + + G  +G++P   + +  +    +  L      +   +       A 
Sbjct: 537 LHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPVELSEERRLAYVGITR--ARQRLYLSRA- 593

Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
                   RS     +    SR+L+ +                   +    +       P
Sbjct: 594 ------IVRSSWGQPMLNPESRFLREIPQELIEWRRTAPAPSFSAPVSGAGRFGTPRAAP 647


>gi|299531353|ref|ZP_07044763.1| exodeoxyribonuclease V, gamma subunit [Comamonas testosteroni S44]
 gi|298720760|gb|EFI61707.1| exodeoxyribonuclease V, gamma subunit [Comamonas testosteroni S44]
          Length = 1195

 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 105/944 (11%), Positives = 250/944 (26%), Gaps = 85/944 (9%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L  T++      PL    L    + V +    +  +    E  G  +     +       
Sbjct: 31  LADTVLAWLAAHPL--QALEPEIVLVQSNGMAEWFKMRMAEQQGVCAAAQVEL----PAR 84

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
               +   +L  +  P  S + +   + RL+ +    L +      P +    P  P   
Sbjct: 85  FVWRSYRQILGRHEVPRESPLDKTPMIWRLMRLLPQCLGE--PAFAPIANFLRPGEPQRL 142

Query: 146 IWLAKNLADIIDIIETEEKK----WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           + LA+ LAD+ D  +         WE    +          +    L    + W + L E
Sbjct: 143 LQLAEKLADLFDQYQIYRADWLAAWEQGEDVLRTAGRPDEPVPEGQL-WQPQLWHKVLAE 201

Query: 202 LNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
           L+       + AL+    + L             +++ G +    +  + +S +A H   
Sbjct: 202 LDEQERAATRPALLARILDALQSGQPPVTPLARRVVVFGMSQMPLSLMQFLSGIAQHSQV 261

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNT---------TYSTHPQYSLAKLLDFLDIK 306
            I +P           +                         +    ++   L  +    
Sbjct: 262 LIAVPNPCRFHWADAIDGRELLRQKRRRHADKGGKDLAQIPLAAMHAHAHPLLAAWGRQS 321

Query: 307 REDVKRLG-----------------NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
           R+ V++L                  +V +E     ++ +   +           + E+  
Sbjct: 322 RDYVRQLDAFDTTGDTAVQWGWPRVDVYDEADASELIDAPLLVQVQQRIRDLVPMSEHPA 381

Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---------KKKSALITADRNLAR 400
             I      +   +A     E   +   L   L E           ++  ++      A 
Sbjct: 382 VEIAAADQSIVFHKAHGLVRELEVLHDQLLQWLAEPAAAGRAVLAPREVVVMLPSIEEAA 441

Query: 401 RVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +           I  DI+     +++   + L  LL    +      +  L+  P
Sbjct: 442 PAIRAVFGQYGRHDARHIPFDIADVGARASSPLVTALQWLLKLPQQRCRLSELCDLLDVP 501

Query: 454 -------LAKFGFPEKYLSRAKNALELVALRGNKNSYD----------IMDLKSLVLDRI 496
                  LA    P+     A   +        +                 L+ ++L   
Sbjct: 502 AVAARVGLAADDLPQLTHWMAGAGIRWGLNHAQRAQLGLAACGDPNSAWFGLRRMLLGYA 561

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
           +           Q     E  +    L   +   +  L+        T    +  +    
Sbjct: 562 SGPALEAAFDEAQVFAGMEPYDEVGGLTAELAGSLASLLGRMLQWWQTAATAAAPEVWAQ 621

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L +                    L    +   + G           +   + +   
Sbjct: 622 RFRSLMDDFFVAQGDEDQALCAALDTALVGWQAACEQAGFEALIPLEVAQEAWLQALSEP 681

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK-NPFLSRVMQSDLNLK 675
            +  +  +S  +     +  R + F+ + L G+N+G +P+   + +  L  +        
Sbjct: 682 ALNQRF-RSGGVTFCTLMPMRAIPFEVVCLLGMNDGDYPRRATRVDFDLMALPGQQRPGD 740

Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKK 733
            A +   +      + +    L  + + R   +N     S  + +L        +     
Sbjct: 741 RARRDDDRQLMLDALLSARSKLYISWAGRHVRDNSEQPPSVLVSQLRDYLS-QGWQGEGS 799

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
            G    +    L     + H  +P      E      +F+     +++  A     ++  
Sbjct: 800 AGLSARERGDLLLAQRTRQHPLQPFSRRYFEQASGLSTFAREWYGVHEERAAQVLPVVAA 859

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                            L H      ++ R+     +   L++       +       I 
Sbjct: 860 FEPDPEVPLTLARLTEFLRHPA-RSFLRNRLQVRFEQDEELLEDDELFSVDGLTAYGLIQ 918

Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
            + + +  +++H     +  +Q   +   +     + +  +G  
Sbjct: 919 QLQQSVRTQLAHD-AALDVGLQVQRQVQRLGRAGVLPLAGLGRR 961


>gi|15806776|ref|NP_295498.1| DNA helicase II [Deinococcus radiodurans R1]
 gi|6459549|gb|AAF11329.1|AE002019_2 DNA helicase II [Deinococcus radiodurans R1]
          Length = 745

 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 75/724 (10%), Positives = 174/724 (24%), Gaps = 105/724 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R     +              GD+    F +  +          
Sbjct: 58  GEILAVTFTNKAAAEMRERAGHLVPGA----------GDLWMSTFHSAGVRILRTYGEHI 107

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R   +        +   DIIK++    P     +          +  IID  ++   
Sbjct: 108 GLRRGFVIYD-----DDDQLDIIKEVMGSIPGIGAETQPRV------IRGIIDRAKSNLW 156

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-- 222
             +DL   +          AA     A + +  R    NA          +R   E    
Sbjct: 157 TPDDLDRSREPFISGLPRDAAA---EAYRRYEVRKKGQNAIDFGDLITETVRLFKEVPGV 213

Query: 223 ---MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
              ++     I +     +  A   L   +A+     +V+   D       +     ++ 
Sbjct: 214 LDKVQNKAKFIHVDEYQDTNRAQYELTRLLASRDRNLLVV--GDPDQSIYKFRGADIQNI 271

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +                                  +       ++     +    
Sbjct: 272 LDFQKDYPD--------------------------AKVYMLEHNYRSSARVLEAANKLIE 305

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397
            NT+ L+  +  +++    V    A + R E   +A  L     E +   + A++     
Sbjct: 306 NNTERLDKTLKPVKEAGQPVTFHRATDHRAEGDYVADWLTRLHGEGRAWSEMAILYRTNA 365

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L R  I   I  G+          + +         D +A+           
Sbjct: 366 QSRVIEESLRRVQIPARIVGGVGFYDRREIRDILAYARLALNPADDVALRR------IIG 419

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                    A   L   A   + +        +            T              
Sbjct: 420 RPRRGIGDTALQKLMEWARTHHTSVLTACANAAEQNILDRGAHKATE------------- 466

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                           L+   +         +   +   T   L  +  +       L  
Sbjct: 467 -------------FAGLMEAMSEAADNYEPAAFLRFVMETSGYLDLLRQEGQEGQVRLEN 513

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID-GETVKPKIEKSSTLFILGTLES 636
            EE  + +  +S+         A+ ++   +++ + D     + K      + ++    +
Sbjct: 514 LEELVSAAEEWSQDEANVGGSIADFLDDAALLSSVDDMRTKAENKGAPEDAVTLMTLHNA 573

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + + G+ +G+ P   A               +       +    +        
Sbjct: 574 KGLEFPVVFIVGVEQGLLPSKGAI-------------AEGPSGIEEERRLFYVGITRAME 620

Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
            +   + +        +       +      FD +   GQ      +             
Sbjct: 621 RLLMTAAQNRMQFGKTNAAEDSAFLEDIEGLFDTVDPYGQPIEYRAKTWKQYRPTVPAAT 680

Query: 757 PKPF 760
               
Sbjct: 681 TAVK 684


>gi|317047247|ref|YP_004114895.1| UvrD/REP helicase [Pantoea sp. At-9b]
 gi|316948864|gb|ADU68339.1| UvrD/REP helicase [Pantoea sp. At-9b]
          Length = 1130

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 78/925 (8%), Positives = 225/925 (24%), Gaps = 141/925 (15%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +   + ++   + G L E              + +   + +A  E+      +    +
Sbjct: 218  PGTGKTQTLV-GRVKGLLNEGVDPR--------KILLLTFSNKAAGEMAERIARVDSGAA 268

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
              +  I +      +          NL      + R                + ++ L  
Sbjct: 269  AAM-WIGTFHSFGLD-LVRRFHDKLNLPQSPRMLDR---------------TEAVELLEH 311

Query: 133  ESPLSLPISPANAIWLAKNLADIID---IIETEEKKWEDLHALKNE--------KYGMWW 181
            E P    +   N    ++ +AD +      + E         L                 
Sbjct: 312  EFPKLGLVHYRNLYDPSRIIADFLAGISRAKDEVVDASTYLKLAQAMRDSAVENDAITDA 371

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGST 236
              A + +      +     +             ++   E+       + T   +++    
Sbjct: 372  EKAIE-VAKVYAAYENLKQQSECIDFGDLVSLPVKLLEENEAIRSHIQSTYEHVLVDEYQ 430

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
                ++ RL+  +    NG  +    D       +   +  +     +   +    +Y L
Sbjct: 431  DVNHSSVRLLKAICG--NGNNLWAVGDAKQSIYRFRGASSFNMTRFGNED-FPGGVRYRL 487

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
                  +        R           S +           ++R       + P +    
Sbjct: 488  KMNYRSVPEIVSTFSRFAVGMAVGDADSWLRPNRGSNACKPELRFVGQGVQQSPALADAI 547

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
             ++                           +  A++         +  +L R GI +   
Sbjct: 548  QEMRGAGYP--------------------YRDQAVLCTGNEKLSEIGQQLERLGIPVL-- 585

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
                         L S+        +     +L+                  +   +  +
Sbjct: 586  ------------FLGSVFE----RPEIKDWLSLLS--------------LLVDRRAMGLV 615

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
            R        M L+ +       ++ +            +        +  +++ +     
Sbjct: 616  RMACLPEFTMSLEDVGNILACLREEDDWGDWRDKVNQFQISANGRTALKRLIKTLDGFKG 675

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
              +          + D T++      +    +  +    W  +    L    S       
Sbjct: 676  DTSPWTVLATV--LLDRTRIVARLATSSGCSDRSQCIATW--QLLNFLRVQPSTGEGLFI 731

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                + I  +  +    D   +    +    + ++    S+ L F  + + G+N    P 
Sbjct: 732  TRTLDRIRRLVRLGDDRDLRQLPVVAQSIDAVRLMTIHGSKGLEFPVVHVPGMNADTLPG 791

Query: 657  N------TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS--LRENNI 708
                      +  ++    +     + E    +    +   +  R  ++  +        
Sbjct: 792  YTQKQACPPPDGMIAGSKANAREQFSLEHKAERECLFYVALSRARDQLFLYAALRNAAGS 851

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                S +L R+                       R ++            P   +     
Sbjct: 852  TRRKSEYLDRIEPNL-----------------IQRNIEPHHPVIEPPESLPIDWVADGEF 894

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S  ++    + P   +   +L++                +  H+ + ++ +  I    
Sbjct: 895  KLSGDQVSLYESCPRRFFYTHVLQIGGRRSPTPF-------SKMHDAVRKVFRDMIEA-E 946

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
              I   ++  ++   + E L    +  +   F  ++   + +   I+          P+ 
Sbjct: 947  STIITNIEGSVEQALKVEGL---AEHGYAPEFKSLALDMVRYFNSIREGHAP---ETPSV 1000

Query: 889  MAIESIGIHLTGFADRIDLLKSGFV 913
            + ++   I +T   D + +   G  
Sbjct: 1001 LTMKFGDIPITVQPDDVLIYSDGRR 1025


>gi|120610596|ref|YP_970274.1| ATP-dependent DNA helicase UvrD [Acidovorax citrulli AAC00-1]
 gi|120589060|gb|ABM32500.1| ATP-dependent DNA helicase UvrD [Acidovorax citrulli AAC00-1]
          Length = 818

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 65/706 (9%), Positives = 160/706 (22%), Gaps = 102/706 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            S+     T +A +E+ +    +     +      I +   +      A    S  L   
Sbjct: 80  GSILAVTFTNKAAKEMTARLSAMLPVNVRGMW---IGTFHGLCNRLLRAH-HKSAGLPAT 135

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
              +    +L+ +  + +    D  +    +                   A  I   + E
Sbjct: 136 FQILDTQDQLSAVKRLCKQFNIDEERFPPKQM------------------AYFISGCKEE 177

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
             +  D+ A   +                 + + E+             +       ++ 
Sbjct: 178 GLRPGDVDARDAD---------GRKKVELYQLYEEQCQREGVVDFGELMLRSYELLRDND 228

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVA------NHPNGAIVLPGLDCHIPTAIW 271
                 +     I++     +       +  +A             VL   D       +
Sbjct: 229 PIRAHYQRRFQHILVDEFQDTNKLQYAWLKQIAGDVVDGRLVTHGSVLAVGDDDQSIYAF 288

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                 +                                        ++       S   
Sbjct: 289 RGARVGNMQDFVREFDVR--------------------------HQIKLEQNYRSYSNIL 322

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KK 388
              +     N+  L   +   Q     V + EA  +  EA  +   +R     +    ++
Sbjct: 323 DSANALISHNSRRLGKNLRTTQGPGEPVRVYEAPTDLAEAQWMVDEIRQLARNDGFERRE 382

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            A++      +R ++  L    +   +  G+            + L  +   +D  +   
Sbjct: 383 IAVLYRSNAQSRVIESALFNAAVPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFMR 442

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
           +V  P    G     + +        +L    ++       +L                 
Sbjct: 443 VVNFPPRGIGARTVEVLQDAARQAGCSLHDAVSAVPGKAGANLGAFVAMVDVMREQTQGQ 502

Query: 509 QSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
             R        +  LV+H          +  L        S                 + 
Sbjct: 503 TLRGIIGQMLESSGLVEHYRAEKEGADRLENLDELINAAESFVTQEGFGRDAVAL--PVD 560

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                  +   +   +     +       ++  +    +       +T            
Sbjct: 561 EHGASLRQSPASQGIDPSLPVVDEPLPGGVDADTGETLSP--LAAFLTHAALEAGDNQAQ 618

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                + ++    S+ L FD + +GG+ EG++P   +              +   +    
Sbjct: 619 AGQDAVQLMTVHASKGLEFDAVFIGGMEEGLFPHENS--------------MSDRDGLEE 664

Query: 683 QAAHDFEMANGTR-HLIYTRSL----RENNIPTIASRWLQRLLVLG 723
           +    +      R  L  + S            I SR+   L    
Sbjct: 665 ERRLMYVAITRARKRLYLSHSQTRLLHGQTRYNIKSRFFDELPEAA 710


>gi|83594763|ref|YP_428515.1| UvrD/REP helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83577677|gb|ABC24228.1| UvrD/REP helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 1187

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 78/857 (9%), Positives = 176/857 (20%), Gaps = 141/857 (16%)

Query: 167  EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
            E L A    +           +    K +  R   L         +A  R  A       
Sbjct: 359  ERLRAATTAQASE---ALLTLVGAMLKDYQRRKRALGRMDYEDLILAARRLLAGDGAAAW 415

Query: 227  --------KGPIIIAGSTGSIPATARLMSTVANH----------PNGAIVLPGLDCHIPT 268
                       +++  +  + P    + S +A                 V    D     
Sbjct: 416  VLFKLDGGLDHLLVDEAQDTSPDQWAIASALAGEFFTDSARWDGTRPRTVFAVGDRKQSI 475

Query: 269  AIWNTITEKSTNITSSNTTYST---HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
              +     K+      +   +       ++   L       R  ++ +  V      R  
Sbjct: 476  YGFQGADPKAFEDMRRHFHDAVSDIGGHFAEVPLNISFRSTRAVLEAVNAVFARQPARDG 535

Query: 326  VISKSFLPPDTSD---------------MRNTDILENKIPNIQKCFSDVALIEADNEREE 370
            V           D               +        ++           +         
Sbjct: 536  VAQDDADSGVAEDITHHAFRKDAGGLVELWPAMEPAPRVVGDPWKPPVERIGLESARARL 595

Query: 371  AISIAIALR------MSLDENKKKS------ALITADRNLARRVKLELTRFGINIDISAG 418
            A  +A  ++        L+   +         L+         +   L    + +     
Sbjct: 596  AKRVAQRIKTMTSGGELLESQGRPIRPGDILVLVRRRGGFEEELVSALKSAKVEVAGVDR 655

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
            + L+  L    L +L  A+    D + +A+++K PL        +               
Sbjct: 656  MTLTDQLAVMDLIALGKALLLPEDDLTLASVLKGPLIGLDEDALFTLAR----------- 704

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                                                 D+     L D +         Y 
Sbjct: 705  -------------------------------------DRGRDERLWDRLRPHAGAENAYG 727

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE--EEGKTLSSLFSKIIETGS 596
                        +            +    + +   L     E    +    +  +    
Sbjct: 728  KAMEIIEPLRDRAGRLAPHEFYAHVLDGPLNGRRLLLGRLGPEAEDPIDEFLALTLAHER 787

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW-- 654
                    ++  + +                + I+    S+ L    + L          
Sbjct: 788  VGPPALQGFLSWLEKGTVEIKRDLDQGALDAVRIMTVHGSKGLQAPVVFLPDTLAKPTGN 847

Query: 655  ---------------PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
                           P            +++ ++    E+        +         +Y
Sbjct: 848  DLLLWTADKGVADALPFWCPSKADRGAAIEAMIDALKVERDREYRRLLYVAMTRAADRLY 907

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK--------KRGQCYLDWTRKLDYTTKQ 751
                     P     +      L  +     +         K  +       +    +  
Sbjct: 908  ICGWETLKRPAEDCWYALIHDALAASAQTVEVPLLDATGALKDTEVLRLTCPQEGSPSPS 967

Query: 752  PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                         A                    +             + DP R  RG L
Sbjct: 968  DSAAPADEEGEAPAAWAALPPPLEPTPSRPLAPSHVGDEGAARSPLDGRGDPRRFLRGRL 1027

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
             H ++  L +       P     + +   +   +E      +++          + L+  
Sbjct: 1028 IHKLLQLLPELPDEDRGPAARRWLSRPAWALEAEEIGALSAEVL----------AVLDDP 1077

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE--TA 929
                         +P    + +    ++G  DR+ +     V I DYKT   P +     
Sbjct: 1078 AFRAVFAPGSRAEVPLVGLVGNH--VVSGQVDRLAVTDD-EVLIVDYKTNRPPPRAVDLV 1134

Query: 930  QKLIDPQLSLEAAALKA 946
                  Q++   A L  
Sbjct: 1135 DIAYIRQMAAYRALLAQ 1151


>gi|229132031|ref|ZP_04260894.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST196]
 gi|228651431|gb|EEL07403.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST196]
          Length = 1166

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 97/916 (10%), Positives = 220/916 (24%), Gaps = 133/916 (14%)

Query: 150  KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
              +  + + + +     E       +            +K+ ++ +     +        
Sbjct: 243  DEVKKLQEELFSRR--PESFLR-DFQDMHPVLEKLVKLVKVFTERFQAIKRDKGMVDFTD 299

Query: 210  YQIALMRAEAEHLMKGTKGP-------------IIIAGSTGSIPATARLMSTVANHPNGA 256
             +   ++  +E    G   P             +++     +      ++  V       
Sbjct: 300  LEHFCLQILSEQSEGGEMKPSAVALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESE 359

Query: 257  -IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH-------PQYSLAKLLDFLDIKRE 308
              +    D       +               T              +     + L     
Sbjct: 360  GNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGSGGGMKIDLAKNFRSRHEVLAGTNF 419

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
              K++                               L       ++        E +  +
Sbjct: 420  IFKQIMGEEVGEIDYDADAELKLGASYPEGEDVAAELLCIQQTEEEVQDGEEGAEVEKAQ 479

Query: 369  EEAISIAIALRMSLDE---------------NKKKSALITADRNLARRVKLELTRFGINI 413
             EA  +A  ++  +D                  +   ++      A ++  EL   GI +
Sbjct: 480  LEARLMAQRIKAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPV 539

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
                          +I+ ++   I      + +A +++ P+      E    RA      
Sbjct: 540  YADLATGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRA----HG 595

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL----- 528
                  +     +    L  ++    K        Q       ++    L+  +      
Sbjct: 596  KKGSFYEVMSSFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGY 655

Query: 529  -QCITPLVTYKTNKNSTCGNLSISDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGK 582
               +  L   K  + +       +   +          L+ +     R          G+
Sbjct: 656  YDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGE 715

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDI--------------------ITRLIDGETVKPKI 622
                +    I     ++   +    +                              + K 
Sbjct: 716  QEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKY 775

Query: 623  EKSSTLFILGTLESRL----LNFDTLILGGLNEGVWPKNTAKN------PFLSRVMQSDL 672
               S L I   ++  L    +    + L    E +    T K+       +L     S+ 
Sbjct: 776  TTLSQLAIKRKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEW 835

Query: 673  NLKTAEKYIGQAAHDFEM----ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
             L    +       D+       +    ++                   ++ V+ G D  
Sbjct: 836  LLPDHIRAGASCYLDWIAPSLYRHRDSEMLLELGQGNIPGEIYEYSASWKVEVVEGKDLL 895

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY----------SFSEIKQ- 777
                 + +         D        +R +           Y          S +EIK+ 
Sbjct: 896  APEPVQEEKQELLEALRDKKAVPLESERKEEVYDRLMWEYGYADATSHRAKQSVTEIKRN 955

Query: 778  -----LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
                   ++ +    R  +K       KK     +RGT  H ++  +     +   P   
Sbjct: 956  YQSEEGSDNAFIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITI 1010

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
             ++++ I S   KE L    +        K+   F     K   + + +   +P  M + 
Sbjct: 1011 EVLQEQIASMVNKELL--TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLS 1068

Query: 893  ------------SIGIHLTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL---- 932
                           I + G  D +   + G + + D+KT    G  P      K     
Sbjct: 1069 AEEAYQDWQGKKGESILVQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPILED 1127

Query: 933  -IDPQLSLEAAALKAG 947
                QLSL A AL+  
Sbjct: 1128 RYKVQLSLYAKALEKS 1143


>gi|320531921|ref|ZP_08032829.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135863|gb|EFW27903.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 886

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 85/762 (11%), Positives = 183/762 (24%), Gaps = 96/762 (12%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            +     T++A  EL             + +LP   +  D       AD           
Sbjct: 69  QILGLTFTRKATAELDQRVASRLADLSAAGLLP--ATASDDDGGVRAADATDVGEPMIAT 126

Query: 104 S---------------NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
                            +     L      W+     +     P    SL  + + A+ L
Sbjct: 127 YNSFAGTLVRDHGLRIGVDPDSTLITQARSWQIVSSLLEARTLPLPNESLSHNASAALVL 186

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASK 193
              L+  +  IE   K   DL                          W    D +    +
Sbjct: 187 GDALSQNLLTIEDAAKDLADLTEQFTALAAIKGCKTLVGKAPAVMAEWEALLDVVAELRE 246

Query: 194 YWTERLVELNASSPVGYQIALMR--AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
            +      L+    +     +     +A   ++     +++     +  A  RL+S +  
Sbjct: 247 -YKRHHGLLDFGDQIALACTIAETVPDAASQVRAQYPAVLLDEFQDTSVAQVRLLSALFA 305

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                 V    D H     W   +  + +            +              E   
Sbjct: 306 DSG---VTAVGDPHQAIYGWRGASAGALDTFHQRFNPPGPARLDSGASPADATPVLELST 362

Query: 312 RLGNVSNEMYGRSMVISK-----SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
              N S  +   ++V +              +      L  +          V      +
Sbjct: 363 SWRNDSTILDVANVVSAPLRSGVVEDGDPVGEHITVAPLRPRPAAFGLESGAVHGAFLQD 422

Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
             EEA ++   L      + +  A++   R     +  EL   G+   I     +     
Sbjct: 423 PAEEARTVIAFLAERWSPSAE-MAVLCRTRAQMDPIAAELEEAGLPYTIVGLGGMLYVPE 481

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
            + + +LL           +  L+       G  +     A              +   +
Sbjct: 482 VADVRALLTVASDPERGDRVVRLLTG--FGIGASDLRALAALARELTRPAPEGDQAGSPV 539

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
               +  D     +    +  W    ++E+      L +     +         +     
Sbjct: 540 HGDQVEADAPLLSEALDTLLRWHEDGAQEEAAATRDLTEAGR-AVALRTARAIQRIREAD 598

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
           +L + D   +    L        R    +          +  +   +T +      ++W+
Sbjct: 599 SLPLPDLVAMAEQALDLDIEIAARVGHPMGHRALDSFHETALAFATDTDAPTLTGFLDWL 658

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP----------- 655
           D      D  +          + IL    ++ L +D +++ G++E V+P           
Sbjct: 659 DAAEEHEDAMSAPEVEPSPGAVQILTVHAAKGLEWDVVVVPGMDEQVFPSYTSAVKDDLR 718

Query: 656 ---------------------------------KNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                                                  P L+  M +       +    
Sbjct: 719 VAETGWMGSTSIFPFPLRADADDLPPFTVGDLDPAMTDKPLLTETMSAYKEALGRQSLRE 778

Query: 683 QAAHDFEMANGTRHLIY---TRSLRENNIPTIASRWLQRLLV 721
           +    +      RH +    +   +  + P   SR+L  L  
Sbjct: 779 ERRLAYVAFTRARHDLLLTGSHLSKTASKPRRPSRFLTELQR 820


>gi|8928266|sp|Q9S3Q0|PCRA_LEUCI RecName: Full=ATP-dependent DNA helicase pcrA
 gi|5762478|gb|AAD51119.1|AF176554_1 DNA helicase PcrA [Leuconostoc citreum]
          Length = 749

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 68/697 (9%), Positives = 171/697 (24%), Gaps = 117/697 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R     +               DV  + + +           V  
Sbjct: 56  RILAITFTNKAAREMRERIAALLS------------EDVARDIWVSTFHAL-----AVRI 98

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  E   L   +        + L       L +         + +  +I   + +  +
Sbjct: 99  LRRDGEAIGLAKNFTIIDTSAQRTLMKRVINDLNLDTNQYDP--RTILGMISNAKNDMLQ 156

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-------E 218
             D     +  +        + +      +   L    +       +  +          
Sbjct: 157 PRDYAKAADNAF-------QETVAEVYTAYQAELKRSQSVDFDDLIMLTIDLFQSAPDVL 209

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
           A +  +     +       +  A   +++ +A       V+   D       W      +
Sbjct: 210 ARYQQQFEYLHV--DEYQDTNDAQYTIVNLLAQRSKNLAVV--GDADQSIYGWRGANMNN 265

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +                               +  +              +   
Sbjct: 266 ILNFEKDYPN--------------------------AHTVMLEQNYRSTQNILDAANAVI 299

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISI---AIALRMSLDENKKKSALITAD 395
             N + +  K+         +    A  E +EA  I      LR +        A++   
Sbjct: 300 NHNNERVPKKLWTENGKGDQITYYRAQTEHDEANFILSNIQQLRETKHMAYSDFAVLYRT 359

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L +  +   +  G           + + ++ I   +D  A   +V  P  
Sbjct: 360 NAQSRNIEESLVKANMPYSMVGGHKFYERKEILDIMAYMSLITNPDDNAAFERVVNEP-- 417

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                                           L +  L R+    N  +V + ++  S E
Sbjct: 418 -----------------------------KRGLGATSLTRLRELANRLNVSYMKAIGSIE 448

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL-DEHRKLPN 574
                             ++     ++       +++         Q +   ++      
Sbjct: 449 LAPSITTKAASKFLTFAEMMHNLRQQSEFLNVTELTELVMTQSGYRQMLAEKNDPDSQAR 508

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           L   EE  +++  F    +       +     D +        +    E    + ++   
Sbjct: 509 LENLEEFLSVTKEFDDKYQ--PEDPESIDPVTDFLGTTALMSDLDDFEEGDGAVTLMTLH 566

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L GL EG++P +           ++ ++    E+    A      A   
Sbjct: 567 AAKGLEFPVVFLIGLKEGIFPLS-----------RAMMDEDLLEEERRLAYVGITRAM-- 613

Query: 695 RHLIYTRSLRE----NNIPTIASRWLQRLLVLGGTDF 727
           + L  T +              SR++  +        
Sbjct: 614 KKLFLTNAFSRLLYGRTQANEPSRFIAEISPELLETA 650


>gi|307547016|ref|YP_003899495.1| DNA-dependent helicase II [Halomonas elongata DSM 2581]
 gi|307219040|emb|CBV44310.1| DNA-dependent helicase II [Halomonas elongata DSM 2581]
          Length = 762

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 70/692 (10%), Positives = 175/692 (25%), Gaps = 111/692 (16%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
           V     T +A +E+R+    + G  S     + +   +                      
Sbjct: 86  VLAVTFTNKAAREMRTRLEALLGI-SLRHVWVGTFHSIAHRLLRTHWQD----------- 133

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
                 ARL   ++    D    L         I         + +   I   + E  + 
Sbjct: 134 ------ARLPQHFQIIDSDDQLRLIKRLLKDYNIDDERYPP--RQVQSFISGCKEEGLRP 185

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--- 223
             + A  +             +    + +                +  +    ++     
Sbjct: 186 HQVDAHGDAYLSQ--------MVELYERYQLTCERGGLVDFGELLLRSLELLRDNPALLA 237

Query: 224 --KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +   G +++     +       +  +        V+   D       W     ++   
Sbjct: 238 HYQERFGHVLVDEFQDTNTLQYAWLKLLTGMRTPMTVV--GDDDQSIYGWRGARIENIRR 295

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
             +    +          L  L+        + + +N +                    N
Sbjct: 296 FENEFPDTK---------LVRLEQNYRSTSVILDAANALI-----------------RYN 329

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLA 399
            D +  ++         +++    N+ +EA  I   +R  + E  N+++ A++      +
Sbjct: 330 ADRMGKELWTAGDHGEPISVYGGFNDLDEARYIVDTIRERVAEGINRREIAILYRSNAQS 389

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           R ++  L R G+   I  G      L      + L  +   +D  ++  ++  P    G 
Sbjct: 390 RVIEETLIRQGVPYRIYGGQRFYERLEIKNALAYLRLLLNRDDDASLERVINVPARGIGT 449

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                 R                           +R     ++       +      +  
Sbjct: 450 RTVETLR---------------------------NRARQTGDSLWQSLHNATSDGSLRGR 482

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
           AV  +      I  L       +       +++ T L              ++ NL    
Sbjct: 483 AVSSLKAFADLIEQLDNEAAGLSLHEIIDRVNERTGLVEHHRNEKGEKGQARVENLEELV 542

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                 +         +     A+E       L  G+      E    + ++    ++ L
Sbjct: 543 TAAKAFTQGEAFEGVEAGEGMAALEAFLAEAALNAGD--HEADEFEDCVQLMTLHSAKGL 600

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLI 698
            F  + + G+ EG++P                ++++   +   +    +       + L 
Sbjct: 601 EFPVVFMAGVEEGLFP--------------HKMSMEEPGRLEEERRLCYVGMTRAMKKLY 646

Query: 699 YTRSL----RENNIPTIASRWLQRLLVLGGTD 726
            T +              SR+L+ +      +
Sbjct: 647 LTHAELRRLHGKETFQRPSRFLREVPENFMEE 678


>gi|325847004|ref|ZP_08169830.1| conserved domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480976|gb|EGC84021.1| conserved domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 1000

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 81/236 (34%), Gaps = 34/236 (14%)

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             +S SEI+     PY  +    LK     +     D  + G + H  +  + K     +
Sbjct: 766 NRFSVSEIESYARCPYKYFINYGLKAKKNKNLD--VDMMEIGNIVHYNMENISKDLRGID 823

Query: 828 TPEINHL-MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH--------------EE 872
              ++   ++ +++ +F+K         + +   +   + F+                ++
Sbjct: 824 IKNLDDKKLESLVEENFKKAIESS----LEKMRANDNKNKFILSNVYGSTQKSTKKVLDQ 879

Query: 873 KIQSSIEKIFVNIPA-------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP- 924
             +   +   V           ++ ++     L G  DRID  +  FV I DYKTG    
Sbjct: 880 IKKGKFQIDGVEEKYGKGQKYPEVYVDDHNY-LEGRIDRIDRFED-FVRIIDYKTGSTEI 937

Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
             +     I  QL +   ++K      +        FY+ LK + +       KK+
Sbjct: 938 NIKYVFNGIQLQLFVYMLSVKEKKSENLSPV---ASFYLPLKDEVQKIDDPVTKKQ 990


>gi|228477389|ref|ZP_04062025.1| ATP-dependent DNA helicase PcrA [Streptococcus salivarius SK126]
 gi|228250824|gb|EEK10012.1| ATP-dependent DNA helicase PcrA [Streptococcus salivarius SK126]
          Length = 769

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 75/690 (10%), Positives = 193/690 (27%), Gaps = 120/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R     +    +T   +I +   +       +       N     
Sbjct: 54  NILAITFTNKAAREMRER--AMALNPATSETLIATFHSMCVRILRRE-ADHIGYNRNFTI 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++             L P+       +    I  AKN  D++D +  E
Sbjct: 111 VDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLLDEVAYE 157

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            +  +    +                    K + E L    A       +  +R   ++ 
Sbjct: 158 HQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNP 202

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  +  L +     ++ ++    V      R              
Sbjct: 261 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANEVIKNNRNRRPK----------- 304

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
                     K+         +    A++ER+EA+ +A  +   + E     K  A++  
Sbjct: 305 ----------KLWTQNDDGEQIVYYRANDERDEAVFVASTIDNIIREEGKNFKDFAVLYR 354

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + S LN I    D ++   +V  P 
Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPADNISFERVVNEP- 413

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                 +       +  +++   ++  +  + +          +
Sbjct: 414 ----------------------KRGVGPGTLEKIRTFAYEQNMSLLDASANIMLSPIKGK 451

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                       +      ++  +   +      ++      +                 
Sbjct: 452 A--------AQGVYDFANMILNLRDQLDGLSITEAVEAVLDKSGYLDALSMQQTLESQAR 503

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  +++  F +     +  +         +  L           +++ + ++   
Sbjct: 504 IENIEEFMSVTKNFDETNSDDTEDETGIDRLGRFLNDLALIADTDDGDMEAAEVTLMTLH 563

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P + A               +  E+   +    +      
Sbjct: 564 AAKGLEFPVVFLIGMEEGVFPLSRAS--------------EDPEELEEERRLAYVGITRA 609

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRL 719
             +++     TR+L         SR+L+ +
Sbjct: 610 EEILFLTNANTRTLFGKTNYNRPSRFLREI 639


>gi|196250519|ref|ZP_03149210.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16]
 gi|196210009|gb|EDY04777.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16]
          Length = 724

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 83/714 (11%), Positives = 194/714 (27%), Gaps = 122/714 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           ++     T +A +E+R     + G  +       I +   +       D+     +N   
Sbjct: 58  NILAITFTNKAAREMRERVQALLGGAAEDVW---ISTFHSMCVRILRRDI-DRIGINRNF 113

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           S +    +L+ +  I + K  D             P +    I  AKN  D++       
Sbjct: 114 SILDPTDQLSVIKAILKEKNIDPK--------KFEPRTILGTISGAKN--DLL------- 156

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE---LNASSPVGYQIALMRAEAE 220
              E        +   ++      +    + + +RL+    L+    +   + L     +
Sbjct: 157 -TPEQFAK----RASTYYEKI---VSDVYQEYQQRLLRNHSLDFDDLIMTTLQLFDRVPD 208

Query: 221 HLMKGTKG--PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
            L         I I     +  A   L+  +A       +    D       W     ++
Sbjct: 209 VLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQN--ICAVGDADQSIYRWRGADIQN 266

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       +P   +  L       +  ++    V      R               
Sbjct: 267 ILSFE-----RDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPK------------ 309

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALITAD 395
                    ++         +   EA NE +EA  +A  ++ +++         A++   
Sbjct: 310 ---------RLWTENPEGKPITYYEAMNEADEAQFVAGRIQEAIESGARRYSDFAVLYRT 360

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L +  I   I  G+          + + L  I   +D +++  ++  P  
Sbjct: 361 NAQSRVIEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKR 420

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G           A   ++L       +++ L +     +A  +               
Sbjct: 421 GIGASTIDKLVRYAAEHELSLFEALGELEMIGLSAKATGALAAFR--------------- 465

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                             L  +   +        + +    +                 L
Sbjct: 466 ----------------GQLEQWTQLQEYVSVTELVEEVLDKSGYRDMLKAERTIEAQSRL 509

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI-ITRLIDGETVKPKIEKSSTLFILGTL 634
              +E  +++  F    E  S  K+      D+ +   +D      + E+   + ++   
Sbjct: 510 ENLDEFLSVTKHF----ENASDDKSLIAFLTDLALISDLDELNGNDQTEEGDAVVLMTLH 565

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EG++P N +              L   ++   +    +      
Sbjct: 566 AAKGLEFPVVFLIGMEEGIFPHNRS--------------LDDEDEMEEERRLAYVGITRA 611

Query: 695 -RHLIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
              L+ T +       N      SR+L  +                +  +   +
Sbjct: 612 EEELVLTSAQMRTLFGNIQMNPPSRFLNEIPAHLLETVSRRQMTASRPVVSRPQ 665


>gi|317501978|ref|ZP_07960162.1| hypothetical protein HMPREF1026_02106 [Lachnospiraceae bacterium
            8_1_57FAA]
 gi|316896658|gb|EFV18745.1| hypothetical protein HMPREF1026_02106 [Lachnospiraceae bacterium
            8_1_57FAA]
          Length = 1197

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 85/845 (10%), Positives = 214/845 (25%), Gaps = 155/845 (18%)

Query: 213  ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG-AIVLPGLDCHIPTAIW 271
             L+ +            I+I     S      ++++V+    G   +    D       +
Sbjct: 375  ELVPSAVAGEYAKQFEEIMIDEYQDSNFVQETILTSVSGQAEGKNNIFMVGDVKQSIYSF 434

Query: 272  NTITEKSTNITSSNTTYSTHPQYS--LAKLLDFLD-------------IKREDVKRLGNV 316
                 +      +  +     +    L K                   +K+E      + 
Sbjct: 435  RLSRPELFMQKYNTYSLEDSDRQRIDLHKNFRSRGEVLDSVNYIFRRIMKKEMGGIEYDD 494

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
            S  +Y  +       +          +   +          D      +  R EA  IA 
Sbjct: 495  SAALYLGAKFPKTEEIEAKRYISSECERNTDLFKTELLILKDRDKEAENVRRSEARMIAR 554

Query: 377  ALRMSLD--------------ENKKKSALITADRNLARRVKLE-LTRFGINIDISAGIPL 421
             ++  +                  K   ++T             L   GI     +    
Sbjct: 555  RIKSLMRGGVVSDKKTGEYRPVQYKDIVILTRSVKGWAEDFSAVLAEEGIPAYSVSREGY 614

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              T   S+L   L  +      + +A ++  PL      +    R               
Sbjct: 615  FETYEVSVLLDYLKILDNGRQDLPLAAVLASPLGNLLTEDMAKIRVA------------- 661

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                               +       +   SEE ++    L D +++  + +  ++   
Sbjct: 662  -----------------YPDVPFHESARMYASEEAQDPV--LKDRLMRFFSQVDHFRKKV 702

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
            + T  +  +++  + T        +        +      + L         T      +
Sbjct: 703  SYTPIHDLLTEIIEETG-----FGIYISAMEGGVQRAANVEMLVEKAKAFEGTSYKGLFH 757

Query: 602  AIEWIDIITR-LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
             + +I+ + +  +D        E++ T+ I+   +S+ L F  +   G+ +    ++T  
Sbjct: 758  FVRYIEQLKKYDVDYGEAGIMDEQADTVRIMSIHKSKGLEFPVVFAAGMGKQFNTQDTKS 817

Query: 661  NPFLSR---------VMQSDLNLKT-----------AEKYIGQAAHDFEMANGT------ 694
            +  L            ++      T            E +  +    +            
Sbjct: 818  SMILHPEWGIGIDKIDLKRRTKAPTFLKKLIREEAMYEMWAEEMRILYVALTRAKEKLIM 877

Query: 695  ----RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
                      RS ++  I   A  +   ++     +  +   +     +      D    
Sbjct: 878  TGVLPDRFIMRSGKDGVITAGAKSYFDWIIPALWPEEEEAALEDAPVCIFQYTGNDIGAD 937

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSE------IKQLINDPYAVYA---------------RR 789
                K  +    +          +      + +  +  Y  Y+               R+
Sbjct: 938  ILQVKSEQLALDVLKHWDVTKVYDPEIRKCLDEQADYVYPYYSEGGMKMKFTVSELKKRK 997

Query: 790  ILKLDFIPH----------------FKKDPDRTDRGTLFHNIIT--ELIKKRINKNTPEI 831
             L+ +                     ++      RG+ +H  +   +  K+       ++
Sbjct: 998  ALQEEAGEEMYKEPQTVPLLPRFIKEEETLSGASRGSAYHKFLELLDFAKEYEA---DDL 1054

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
               ++++ +       +   I+      F +        +        K++   P  +++
Sbjct: 1055 EAEVERLAEDGRLSREMAECIETEDMMRFLRTKSGVRMLQAARN---RKLYKEQPFVISV 1111

Query: 892  E----------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
                          I + G  D     + G + + DYKT     ++   +    QL   A
Sbjct: 1112 NASEIYQGDLSGEKILVQGIIDVYFEEEDG-LVVLDYKTDQVKSRKELAEKYHAQLEYYA 1170

Query: 942  AALKA 946
             AL  
Sbjct: 1171 HALSQ 1175


>gi|293393896|ref|ZP_06638203.1| excision endonuclease subunit UvrD [Serratia odorifera DSM 4582]
 gi|291423723|gb|EFE96945.1| excision endonuclease subunit UvrD [Serratia odorifera DSM 4582]
          Length = 723

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 73/689 (10%), Positives = 161/689 (23%), Gaps = 117/689 (16%)

Query: 50  YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP---VS 104
              T +A  E+R    ++ G          I +   +      A   +  NL      + 
Sbjct: 63  VTFTNKAAAEMRHRIEQLIGTSQGGMW---IGTFHGLAHRLLRAH-HMDANLPQDFQILD 118

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +  +L  L R++                                                
Sbjct: 119 SEDQLRLLKRIVRALNIDEKQWPPRQAMWYINGKKDD---------------------GL 157

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
           + + + +  N     W            + + E              +            
Sbjct: 158 RPQHIESYGNPVEATWLR--------IYQAYQEACDRAGLVDFAELLLRAHELWLNKPHI 209

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +       +  +A   + A V+   D       W     ++ 
Sbjct: 210 LNHYRERFTNILVDEFQDTNRIQYAWIRLLAG--DRANVMIVGDDDQSIYGWRGAQVENI 267

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +                            G  +  +       S      +T   
Sbjct: 268 QRFLKDFP--------------------------GAETVRLEQNYRSTSNILKAANTLIA 301

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397
            N   +   +         ++L  A NE +EA  +   ++   D        A++     
Sbjct: 302 NNDGRMGKNLWTDGAEGEPISLYCAFNELDEARFVVNRIKSWQDNGGALNDCAILYRSNA 361

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L +  +   I  G+            + L  I   ND  A   +V  P    
Sbjct: 362 QSRVLEEALLQTAMPYRIYGGMRFFERQEIKDALAYLRLIANRNDDAAFERVVNTPTRGI 421

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G     + R                               T ++        +R   +DK
Sbjct: 422 GDRTLDVVR------------------------------QTARDRQMTLWQATRALLQDK 451

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            LA      + +    +            ++      + +   +        +    +  
Sbjct: 452 VLAGRAASALQRFSELVDALAHETADMPLHVQTDRVIRDSGLFIMYEQEKGEKGQARIEN 511

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE  T +  FS   E    +   A      ++                 + ++    ++
Sbjct: 512 LEELVTATRQFSYQDEDQDLMPLQA-----FLSHAALETGEGQADAYQDAVQLMTLHSAK 566

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + + G+ E           F S++   +      E+ +        M   T   
Sbjct: 567 GLEFKQVFIVGVEE---------GMFPSQMSLDEGGRLEEERRLAYVGLTRAMEKLTLTY 617

Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTD 726
             TR L    +    SR++  +      +
Sbjct: 618 AETRRLYGKEVYHRPSRFIGEIPEECIEE 646


>gi|254516481|ref|ZP_05128540.1| hypothetical protein NOR53_2544 [gamma proteobacterium NOR5-3]
 gi|219674904|gb|EED31271.1| hypothetical protein NOR53_2544 [gamma proteobacterium NOR5-3]
          Length = 898

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 92/814 (11%), Positives = 197/814 (24%), Gaps = 57/814 (7%)

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
            + P      L++   +    G +G          +PA    M+ + +     +     + 
Sbjct: 84   ADPFSVARTLLQWRDQWYEAGWQG-----DFEKDVPAKLADMAAIESLARDVV-----EP 133

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
            +I   I   +     N  +  +     P    + L   L          G  +      +
Sbjct: 134  NIGQRIQRVLELLPDNSIAIESITLRDPLTHFSHLWQRLIEASGADIIEGTNAEPQADEN 193

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
              + +      +       +  +           V ++  D+ +E A   A+  R  LD+
Sbjct: 194  TDLGRLQRHLLSDTNEKIHLHGD---------GSVLVLRGDSPQESAPLTALLTRHCLDQ 244

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                S  + A+                 +  SA  P        +L      ++   +  
Sbjct: 245  APDLSIALLAECRGELLDNSLENIHSPRLGFSALSP--WRPVFQVLPLACELLWDPLNPT 302

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
            A+   + H               +   E VA      S D  +  +  L      +    
Sbjct: 303  ALFQFLSH-----SVGPIPRRIREKLAETVAGTPGIGSKDWEETIAQTLANEDEDRREKL 357

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                +  L       A  +    L                     ++DW + +     N 
Sbjct: 358  QADIRYWLEPPRFSPATGVDSQTLSRRA---------------QRVADWLQGSKEASDNP 402

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
             L     +      E    +  L     E  +      +      T     +     I  
Sbjct: 403  ALKSLYNIALNQALEFVSAIERLRVHGRENLTQDNVRRLIEDVRGTGASVTDRSAEVIPG 462

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-DLNLKTAEKYIGQ 683
             + +       +     D +I               +      + +  + L++ +  +  
Sbjct: 463  KARVLRADHSSTFAAPVDNVIWWDCQSSDRVHRWPWSKTERAALLANGVRLQSEDAQLEW 522

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                +           T    ++             L  G      +  +        + 
Sbjct: 523  LGEAWLRPILCAKARCTFVFHDDAERHHPVWDQVACLTDGLPTLQISAPETAAGLGVTSS 582

Query: 744  KLDY-TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
             LD    ++       P      +    SFS +   I+ PY    R   K+         
Sbjct: 583  SLDAYPLQEKVRWWRLPESVTLPKRSAESFSSLDSYIHSPYQWLLRYAAKVRPGSLASVS 642

Query: 803  PDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDSHFEKEN--LPPHIDIIWR 857
                 +G+L H    E  +   +    +   I   + + I     +E   L         
Sbjct: 643  DGNLLKGSLAHRAYEEFFETHADISRIDPNSIADWIDETIGDLLRQEGALLLEPGRQAEC 702

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFV--NIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
              F       L    +   +   + V   +  +         L G  D +     G   +
Sbjct: 703  ERFITQVQESLTTLVRHLLAAAVVKVDMELWQEGVFAGG--KLNGSIDVLATRSDGQEAV 760

Query: 916  TDYKTGDNPKKETAQKLID-PQLSLEAAALKAGSFSQIDCRK---VANLFYIRLKQKFKI 971
             D K G    +  A       QL+  A   +              V +   + L   F  
Sbjct: 761  VDIKWGGKTYRRDALLSNSYLQLATYAQLRRNNDAQWSPALSYFIVQDAHLLSLNHDFFP 820

Query: 972  DCITNDKK-KYSADELSEKSLKNLIEIVTLLQNG 1004
                   K + ++ +  ++  ++          G
Sbjct: 821  RAEIIKPKVEENSAQYWQRFEQSWKWRKAQFDQG 854


>gi|261252167|ref|ZP_05944740.1| exodeoxyribonuclease V gamma chain [Vibrio orientalis CIP 102891]
 gi|260935558|gb|EEX91547.1| exodeoxyribonuclease V gamma chain [Vibrio orientalis CIP 102891]
          Length = 1154

 Score = 91.5 bits (225), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 112/948 (11%), Positives = 240/948 (25%), Gaps = 123/948 (12%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            +L   LVE  R +PL         I V +    Q L+ E  +  G  + I      L  
Sbjct: 11  DVLKSLLVELVRLNPLA-NPFEKEQILVQSPGMSQWLKMELAKEFGVAANID---FPLPA 66

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                   ++L         +      +L  ++        +  +    +  L      +
Sbjct: 67  TFIWNMFTEVLPDVPQRSAFNKESMTWKLMHILPGM----LNTPEFDPLKRYLEQDEDSS 122

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L++ +ADI D         E + A +  +          +  I  +   +  + L 
Sbjct: 123 KLYQLSEKIADIFDGYLVYR--PEWIAAWEAGQTVAELEEEHPWQPILWQALYDHTLALG 180

Query: 204 A--SSPVGYQIALMRAEAEHL--MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                        +     +          + + G T   P     +  +  H +  ++ 
Sbjct: 181 QSPYHRANLYEHFIDTLENYQGNFDHLPKRLFVFGITSLPPRYMDALKAIGEHIDVHLMF 240

Query: 260 PGLDCHIPTAIW-------------------------NTITEKSTNITSSNTTYSTHPQY 294
                +    +                          +  +E+       N     H   
Sbjct: 241 TNPCRYYWGEVRDRKFLARLAAKHRKHVVWNQDHSEQHGESEQLKGSLEDNLLDELHTDA 300

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMY-------GRSMVISKSFLPPDTSDMRNTDILEN 347
               LL  +     D   L +              R  ++ +        +    D   +
Sbjct: 301 VGNSLLASMGKLGRDNMYLLSQLESHEIEAFVDVERDSLLHQLQADILNLEEHQDDHQLD 360

Query: 348 KIPN---IQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLAR 400
              +   +      ++L    +   E   +   L    D +     +   ++ AD N   
Sbjct: 361 SSSHKQVVTLGDKSLSLHACHSPMREVEVLHDQLLAMFDADPSLKPRDIIVMVADINAYS 420

Query: 401 RVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-- 453
                +         I   IS       +   +    L+N          +  L++ P  
Sbjct: 421 PAIQAVFGNAPGERFIPYSISDRTADQESPILNAFMQLVNLPNTRCLASELLELLETPAI 480

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-----------SLVLDRIATQKNN 502
           LA+F   E     AK  +E   +R   N     +              +    +      
Sbjct: 481 LARFELSEDEFILAKQWVEESGIRWGLNPSTGHEFDLPETAQNTWQFGIERMLLGYAMPE 540

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVTCL 561
           +      S  +         L   +   +     T    +       SI +W ++    L
Sbjct: 541 SAGLFESSTGTLAPYNQVQGLGAELAGKLAHFIETVSEYRQKLVQTQSIDEWREVLTLLL 600

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                 E      L  +    TL++L  ++ +               +   + G  V  +
Sbjct: 601 DAFFKVELEGEAAL--KSIRDTLANLKEQLTDAAFEQPLAPAIIAQYLQNKLSGTRVSQR 658

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 +     +  R + F  + L G+N+GV+P+      F     ++    ++     
Sbjct: 659 FLAG-QVNFCTLMPMRSIPFRAVCLLGMNDGVYPRTVPPEGFDLMNGRTKPGDRSRRDDD 717

Query: 682 GQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV------LGGTDFFDNLKK 733
                   M +    L  +   R   +N   + S  +  L+           D      +
Sbjct: 718 RYL-FLEAMLSAQHSLYISYVGRSIQDNTERVPSVLVSELMEYCHQNYCLEGDEQLACDE 776

Query: 734 RGQCYLD----------------WTRKLDYTTKQPHYK------------RPKPFPPLEA 765
            G+  LD                      Y  +                 R + +     
Sbjct: 777 SGEKLLDELLTQHSMVPFSSSAFLGDSPSYAKEWLPAANRQGQVSGEFNQRLQDYLLDVT 836

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            P      E+++    P   +  R LK+     +P  + D      G   + +   L+  
Sbjct: 837 YPLDLDLVELQRFWRLPVQYFFNRRLKVMFEPPLPVMEDDEPFILNGLESYQMRDGLLDS 896

Query: 823 RINKNTP-----EINHLMKQIIDSHFEKENLPPHID---IIWRHLFHK 862
            + +        +   ++K  +D    +  LP           +    
Sbjct: 897 LLKRQLDNGQGSDTKAIIKAFVDEQRAQGKLPVGAFGDIEFETNRVQA 944


>gi|307330766|ref|ZP_07609902.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
           4113]
 gi|306883569|gb|EFN14619.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
           4113]
          Length = 316

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 80/255 (31%), Gaps = 29/255 (11%)

Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
             P   PP   +  + S S     +  P     R I KL              RGT+ H 
Sbjct: 27  AEPSDGPPKSGRAASLSPSRAADFMRCPLLYRFRVIDKLPEK-----PSAAATRGTVVHA 81

Query: 815 IITELIKKRINKNTP-----------EINHLMKQIIDSHFEKE--NLPPHIDIIWRHLFH 861
           ++  L      + T            +     K  +   F++E     P     W     
Sbjct: 82  VLERLFDAPAAERTSPRARAMVPGEWDRLLAAKPELAELFQEEDGAPAPDRLAEWLTGAQ 141

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
            +   +   E+  +  +E     +  +  +ES G+ L G  DRID+  +G V I DYKTG
Sbjct: 142 ALVDQWFSLEDPTR--LEPAERELFVETELES-GLRLRGIIDRIDIAPTGDVRIVDYKTG 198

Query: 922 DNPKKETAQKLIDP-QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
             P            Q+   A  L       +       L  + L     +    ++++ 
Sbjct: 199 KAPAP--QYAGEALFQMKFYALVLWR-----LRGVIPRRLQLVYLGSGDVLTYDPDEREL 251

Query: 981 YSADELSEKSLKNLI 995
            + +       + + 
Sbjct: 252 RAVERKVLALWEAIR 266


>gi|269960507|ref|ZP_06174879.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834584|gb|EEZ88671.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1164

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 111/974 (11%), Positives = 247/974 (25%), Gaps = 110/974 (11%)

Query: 1   MHNKKPNVFTIAPS--SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQ 58
           M    P +FT+  S      + ++  L+    +EN               I V +    Q
Sbjct: 1   MAFGAPTLFTVYHSNQVDVLKSLLVELIRINPLENPFEKE---------QILVQSPGMSQ 51

Query: 59  ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118
            L+ E  +  G  + +      L           +L         +      +L  L+  
Sbjct: 52  WLKMELAKEFGVAANLE---FPLPATFIWDMFTQVLADVPKRSAFNKEAMTWKLMHLLPG 108

Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE----KKWEDLHALKN 174
               L +   +      L      +    LA+ +ADI D            WE    +  
Sbjct: 109 L---LNEASFEPLAR-YLQDDTDNSKLYQLAEKIADIFDGYLVYRPEWIASWEAGQTVPE 164

Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK------GTKG 228
            +    W        +  +   +  V L  S    ++  L     + L            
Sbjct: 165 LEDEHPWQ------PVLWQALYDHTVTLGQS--PYHRANLYEHFIDTLENFNGNFDHLPK 216

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN---------------- 272
            + + G +   P     +  +  H +  ++      +    + +                
Sbjct: 217 RLFVFGISSLPPRYMDALKAIGEHIDVHLMFTNPCRYYWGEVRDRKFLARLAAKHRQHVV 276

Query: 273 ---------TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY-- 321
                      +E+       N     H       LL  +     D   L +        
Sbjct: 277 WQEDHSEVQGESEQLKGSLEENVVDELHTDVVGNSLLASMGKLGRDNMYLLSQLESHEIE 336

Query: 322 -----GRSMVISKSFLPPDTSDMRNTDILENKIPN---IQKCFSDVALIEADNEREEAIS 373
                 R  ++ +        +    D   +   +   +      ++L    +   E   
Sbjct: 337 AFVDVERDSLLHQLQADILNLEEHQDDEQIDSSQHKQVVSLGDKSLSLHSCHSPMREVEV 396

Query: 374 IAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTT 424
           +   L    D +     +   ++ AD N        +         I   IS       +
Sbjct: 397 LHDQLLAMFDADPTLKPRDIIVMVADINAYSPAIQAVFGNAPGERFIPYSISDRTADQES 456

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGNKNS 482
              +    L+N          +  L++ P  L +F   E    +AK  +E   +R   +S
Sbjct: 457 PILAAFMLLVNLPNTRCLASELLELLETPAILKRFDLSEDDFLQAKQWVEESGIRWGLDS 516

Query: 483 YDIMDLK-----------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
           +   + +            +    +      +         S         +   +   +
Sbjct: 517 HTGSEFELPETRQNTWQFGIQRMLLGYAMPESAGLFEAQEGSLSPYNEVQGMRAELAGNL 576

Query: 532 TPL-VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                     +       SI  W +  V  L +    E      L  +    TLS L  +
Sbjct: 577 AHFIQQISQYRRKLSHVQSIDAWRETLVAMLDDFFSVELEGEMAL--KSIRDTLSQLKEQ 634

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
           + +       +       +   + G  V  +      +     +  R + F T+ L G+N
Sbjct: 635 LADAAFDDALSPSIVSQYLQNKLSGTRVSQRFLAG-QVNFCTLMPMRSIPFRTVCLLGMN 693

Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNI 708
           +GV+P++     F     ++    ++             M +  + L  +   R   +N 
Sbjct: 694 DGVYPRSMPPEGFDLMTGRTKPGDRSRRDDDRYL-FLEAMLSAQQSLYISYVGRSIQDNT 752

Query: 709 PTIASRWLQRLLV------LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
             + S  +  L+           D    +   G   L+    +                 
Sbjct: 753 ERVPSVLVSELMEYCHQNYCLNGDQDQPVDDSGDKLLNELVNVHAMVPFSPSAFQGSHSS 812

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
              +    + ++  Q        + R +        F  + D  +    +   +     +
Sbjct: 813 YAKEWIPAALTQSNQSQGHARGEFNRALDDYLLGATFPIELDLVELQRFWRLPVQYFFNR 872

Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
           R+         +M+   D  F    L  +           +  + +         ++   
Sbjct: 873 RLKVMFEPPLPVMED--DEPFVLGGLESYQMRDEL--LETLLETAITQPSAKADVLKHFM 928

Query: 883 VNIPAKMAIESIGI 896
               A+  +     
Sbjct: 929 SEQRAQGKLPVGAF 942


>gi|313159744|gb|EFR59101.1| putative ATP-dependent helicase PcrA [Alistipes sp. HGB5]
          Length = 858

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 70/730 (9%), Positives = 194/730 (26%), Gaps = 101/730 (13%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             L     Y     +   ++     T +A +++R    ++     +    + +   V   
Sbjct: 52  RVLTSRIAYMIEQGVAPFNILALTFTNKAAEQMRERIAQMIPDNRSRYIRMGTFHSVFSR 111

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +           +  +            +N L  I+++L        P   A+ I 
Sbjct: 112 ILRENA-DRIGFPDSFTIYEP--------SDCKNLLKTIVRELNLPDEKYKPNLLASRIS 162

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            AKN                   A                       + +R     A   
Sbjct: 163 YAKNCL----------VTPGAYLANSVYA-AEDRQAQIPEFGNIYNIYCQRCKRNGAMDF 211

Query: 208 VGYQIA---LMRAEAEHLMK--GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
               +    L+R   + L +       I++     +  A   ++  ++   +   V+   
Sbjct: 212 DDLLLQTNILLRDAPDVLARYQEQFKYILVDEYQDTNYAQYVIIRRLSQLHSKVCVV--G 269

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       +     ++      +             ++  L+      + + + +N +  
Sbjct: 270 DDAQSIYSFRGAKIENILSFQKDFPD---------AMVFKLEQNYRSTRTIVDAANSVIV 320

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
           R+    +            ++  + +          + +++A  +REEA  +   LR  +
Sbjct: 321 RNSKRMEKH--------CFSEGDKGEP---------IRILKAYTDREEAEMVVSDLRDKI 363

Query: 383 DENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
            +   +     ++    + +  ++  L R G+   I  G           + + +  +  
Sbjct: 364 RQTGDEWSEAVILYRTNSQSAVLEDNLRRRGVPYRIYKGSSFYDHKEVKDMLAYIRLVIN 423

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
             D  A   +V +P    G                     +       + +LV +  A  
Sbjct: 424 PRDDEAFKRIVNYPARGIGDTTVQRIAELA--------AGRGVSMWEAVDTLVAEPAADP 475

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT--NKNSTCGNLSISDWTKLT 557
              T        ++             +      + T         T      +      
Sbjct: 476 VQKTIARKVSDFVAMIRGLSLARNEKSLYDFGLEIATRSGIIAAYRTENTPEATSALDNI 535

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              L ++ L + ++   +   E  +   +   + ++                  ++  + 
Sbjct: 536 EELLNSMQLFKEQRDAEIRSGERQEDEEATIDEWLQ----------------NVMLMTDM 579

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            K   E  + + ++    ++ L +  + + GL E ++P   A               ++ 
Sbjct: 580 DKDDPEDRNKVTLMTVHSAKGLEYKYVYIVGLEENLFPSQRA--------------AESP 625

Query: 678 EKYIGQAAHDFEMANGTR-HLIYTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNLK 732
           +    +    +      +     + +       N   +  S +L+ +        FD  +
Sbjct: 626 DGIEEERRLFYVALTRAKVEATISYAEMRFKWGNMEFSRPSCFLREIDPKYVRADFDAGE 685

Query: 733 KRGQCYLDWT 742
           +R +   D  
Sbjct: 686 ERPRRPQDGA 695


>gi|294676837|ref|YP_003577452.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003]
 gi|294475657|gb|ADE85045.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003]
          Length = 1049

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 83/803 (10%), Positives = 177/803 (22%), Gaps = 81/803 (10%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVG-----YQIALMRAEAEHLMKGTKGPI 230
                         +     +                     +   R E      G    +
Sbjct: 289  DARAHLAALIHGAQALMAGYDAAKRAGGLIDFADMITETEALLAARPEILAATLGEIDCV 348

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            +I     + P    L+  +A     A+++   D       +     + +    +    + 
Sbjct: 349  VIDEFQDTNPVQFSLLWRLARGAARALIV--GDTKQAIMRFQGADPRLSGALHAACPEAV 406

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
             P      L          ++ +  +   ++                      +L     
Sbjct: 407  DP------LDHNYRSDPRIMRFVNALGPVLFPEGYDALAPHRAETGVPALEALVLPKAKK 460

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
            ++      +A   A    E A     A            A++      A  V   L   G
Sbjct: 461  DVSAPC--IAAHVAALLHEGAQVSDRATGQLRAAQPSDVAVLCYTAAKAASVAKALRAEG 518

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
              + I A           ++ + L  +    D  A    +    A+             A
Sbjct: 519  FAVRIQADGW-RAAPIIRVVRAALALVADPEDSHAALRYLTLGPARLPLQAALTLAIDGA 577

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
            L   A                +   ++  ++  H+                     +   
Sbjct: 578  LATHAG---------------LAPLLSLAEDAPHLTVAALLSKIIPAAGLRDWAATLEAP 622

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK--TLSSLF 588
               L      +       +++   K                L      +  +    +   
Sbjct: 623  AQALADLARFEAEAQAFDALAADLKAAAGFHGASAQVFLGWLAAQTGRDVDRHPDAAGWS 682

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            +  IE  +   A   EW   +   +D + +       +       L++ L +     L  
Sbjct: 683  APGIEICTWHAAKGREWPITVVAGLDYKFIARPNTLRAEFDGFDDLDAVLDHAGLGWLP- 741

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY----TRSLR 704
                        +        +      A+     A   +      R  +     T   +
Sbjct: 742  ------------DFAAPEKQAAFAEALVADDERDAARELYVALTRARDRLILALPTAPSK 789

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW----------TRKLDYTTKQPHY 754
            E   P      L+    L  T     L   G+ +                       P +
Sbjct: 790  EKPRPERMVDLLRARSGLATTTDGTGLTICGESFPARVVMAADPDAGAEAAPDPQPVPRF 849

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
               +P P    +    + S +    +          L              T+RG+ +H 
Sbjct: 850  GLARPHPGTPLRLWRTTPSGLIAPADAARPNLRLIALGAAVRRQRDGFDLATERGSAWHL 909

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
                            +     + +        L P            + H  L      
Sbjct: 910  AFR-------------VAAERPERLAEVGPATGLAPDTVAQIAAQAAALRHWLLA----- 951

Query: 875  QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
                +++   +P +  I + G  +    D +     G + I D+K+G  P  E       
Sbjct: 952  -EGFDRLHFELPLQ-EIAADGSEINAIVDLLAEGPQG-LLIVDHKSGACPYPEARFAGYA 1008

Query: 935  PQLSLEAAALKAGSFSQIDCRKV 957
             QL   A   +      +    V
Sbjct: 1009 SQLQAYAGLAERAFAKPVRGLAV 1031


>gi|228944850|ref|ZP_04107213.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar monterrey BGSC 4AJ1]
 gi|228814878|gb|EEM61136.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar monterrey BGSC 4AJ1]
          Length = 1165

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 96/899 (10%), Positives = 216/899 (24%), Gaps = 143/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++              ++  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMG-EEVGEIDYDADAELK 441

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
            L     +  +       I   ++        E +  + EA  +A  ++  +D        
Sbjct: 442  LGASYPEGEDVAAELLCIQQTEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 501

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 502  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 561

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 562  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 611

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 612  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 671

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 672  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 731

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 732  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 791

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 792  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 851

Query: 690  M--ANGTRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKL 745
                   R       L + +IP    R+     V    G         + +         
Sbjct: 852  APSLYRHRDSEMLLELGQGSIPDEIYRYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 911

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARR 789
            +        +R +           Y          S +EIK+        ++ +    R 
Sbjct: 912  EKKAVPLESERKEEVYDRLMWKYRYGEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 971

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 972  PIRTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL- 1025

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1026 -TFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1084

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1085 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKS 1142


>gi|291531227|emb|CBK96812.1| Superfamily I DNA and RNA helicases [Eubacterium siraeum 70/3]
          Length = 949

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 95/352 (26%), Gaps = 41/352 (11%)

Query: 602 AIEWIDII-TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
              ++ ++    +     + +      +  +   +++ L F  +I+G L      ++   
Sbjct: 555 FERYLRLLKDEGVGEYEDEAEYAPEGCVSFMTIHQAKGLEFPVVIVGSLPLKKESESKDS 614

Query: 661 --NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
                 SR  +          Y       +   +  ++L+       +      S     
Sbjct: 615 FFYSVESRFCRKPFEAPDMIPYFDMWRKYYVAFSRAKNLLVLTEKDGSRTKPFTS----- 669

Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
           ++     D  +    R                               +      S I   
Sbjct: 670 VITENIPDISEYNDNRVFDR---------------------VKKEHIRKTYSFTSHISVY 708

Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
              P      +  K             T  GTL H  + +L +  I     EI  ++ + 
Sbjct: 709 DECPSRYLYFKEYKFAPCEILH-----TSVGTLIHATLEDLNRFAIASRYDEITEVLIKK 763

Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-VNIPAKMAIESIGIH 897
             +    +       ++            L + +K +  I K++      ++ +      
Sbjct: 764 WFALNYAKMQESTGLMLSEERRKSALGQVLNYFDKRKEHIRKVWKAEEKVELVLP--EYI 821

Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKA 946
           L G  D I+    G ++I DYKTG  P              QL + A  +  
Sbjct: 822 LQGVIDLIE-DDDGKIEIVDYKTGRKPDSPEKSAQVEHYRKQLEIYAYLISE 872


>gi|313106802|ref|ZP_07793016.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa 39016]
 gi|310879518|gb|EFQ38112.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa 39016]
          Length = 1157

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 96/867 (11%), Positives = 225/867 (25%), Gaps = 70/867 (8%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L    V   R  PL PL    V ++  +    Q L+    E   +       I +  +V 
Sbjct: 11  LRDLAVSWMRRYPLAPLESERVLVH--SNGIAQWLKLALAEDPREDGGGGGGIAAALEVQ 68

Query: 86  ----EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                       +L     P VS + +     RL+ +    L            L+    
Sbjct: 69  LPAQFLWQAYRAVLGRESIPEVSELDKAPLTWRLMRLLPGLLERPEFRTLQRF-LADDAD 127

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLAADFLKIASKYWTER 198
                 LA+ LAD+ D  +     W D  +   ++               +  ++ W   
Sbjct: 128 LRKRHQLAERLADLFDQYQVYRGDWLDDWSQGRDQLRTANGQARPLGADERWQAELWRAL 187

Query: 199 LVELNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANH 252
           L ++ A S    +  + R   E L       +     +++ G +     T   ++ +A  
Sbjct: 188 LADVGADSLARSRSGVHRRFIEALRFASAAPRALPRRVVVFGISSMPAQTLEALAALARF 247

Query: 253 PNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
               + +     H    I             ++      ++       Q++   L  +  
Sbjct: 248 SQVLLCVHNPCRHHWADIVADKDLLRHEYRRQQRRAGVPADLDEDRQHQHAQPLLAAWGK 307

Query: 305 IKREDVKRLGNVSNEMYGRS------------------MVISKSFLPPDTSDMRNTDILE 346
             R+ +  L +  +    R+                    +               +  E
Sbjct: 308 QGRDYINLLDSYDDPDSYRNLFGEVNGGRIDLFSEEAPHGLLGQLQDDILELRPLAETRE 367

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRV 402
           +  P   +  + +    A + + E   +   L    + +     +   ++  D N     
Sbjct: 368 HWPPVAPRSDASIRFHVAHSAQREVEILHDQLLARFNADPSLKPRDVIVMVPDINAYAPH 427

Query: 403 KLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +        +  I   ++             L  LL           I  L+  P  
Sbjct: 428 IEAVFGQVPRDDQRFIPYTLADQGQRGREPLLIALEHLLKLPDSRFAVSEILDLLDVPAL 487

Query: 456 KFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVP 506
           +  F   E  L+     +E   +R   ++     L        +     +        V 
Sbjct: 488 RRRFGVDEADLATLHRWIEGAGVRWGLDAAQRERLGLPAGLEGNSWRFGLRRMLLGYAVG 547

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK-NSTCGNLSISDWTKLTVTCLQNVC 565
              +    +  +    L   +   +  L+              + + W +     L    
Sbjct: 548 EGAALQGIQPYDEVGGLDAALAGPLAVLLERLEVAYAELAEPATPAQWGERLQALLTVFF 607

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                    L   +  + L                      +     +D   +  +    
Sbjct: 608 EAPDE-RDELLLTQLLQLLERWQEHCACAAFAEPLPISVIREAWLGGLDQGGLNQRFLAG 666

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
           + +     +  R + F  + L G+N+G +P+  +   F           ++  +      
Sbjct: 667 A-VSFCTLMPMRAIPFRLVCLLGMNDGDYPRQQSPLDFDLMRNDYRPGDRSRREDDRYL- 724

Query: 686 HDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
               + +    L  +   R   +N     S  + +L       +  +    G+  L    
Sbjct: 725 LLEALLSAREQLYVSWVGRSIRDNGERPPSVLIGQLRDHLAAGWRLDSDGDGEALLRALT 784

Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
           +      QP  +R     P +     ++++   + ++    + A            +   
Sbjct: 785 Q--EHPLQPFSRRYFHDAPEQGVDGLFTYAREWREVHREDEIGAPDAEAPLPPLELEGAL 842

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPE 830
                     N +    ++R+     +
Sbjct: 843 GLRALAEFLANPVNAFFQQRLKVRFDD 869


>gi|84496467|ref|ZP_00995321.1| hypothetical protein JNB_03070 [Janibacter sp. HTCC2649]
 gi|84383235|gb|EAP99116.1| hypothetical protein JNB_03070 [Janibacter sp. HTCC2649]
          Length = 281

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 75/242 (30%), Gaps = 26/242 (10%)

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
                S S        P     R I KLD  P          RGTL H ++  L +    
Sbjct: 1   MTPALSPSRAADFKQCPLLFRFRTIDKLDGPPSP-----AAARGTLVHEVLEHLFELPAA 55

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDII---------WRHLFHKISHSFLEHEEKIQS 876
           + TPE    + Q   +   +E       I          W      +   +   E     
Sbjct: 56  ERTPEAALALLQPRWASLVEERPELATMIEDDETLTEDGWFTAAGALVERWFTLENPQW- 114

Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP- 935
            +E     +  +  ++  G+ L G+ DR+D+   G + + DYKTG +P    A +     
Sbjct: 115 -LEPAERELYVETEVD--GLTLRGYVDRLDIAPDGSMRVVDYKTGRSP--REAFEGKALF 169

Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
           Q+   A  L               L  + L     +    ++      +   +   + ++
Sbjct: 170 QMKFYALVLWRQ-----RGVIPKLLQLVYLGNGEIVRYEPDEHDLLGLERNVQAVWQAIV 224

Query: 996 EI 997
             
Sbjct: 225 RA 226


>gi|116620297|ref|YP_822453.1| ATP-dependent DNA helicase Rep [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223459|gb|ABJ82168.1| ATP-dependent DNA helicase, Rep family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 788

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 78/689 (11%), Positives = 164/689 (23%), Gaps = 109/689 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKST-ILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           ++V     T +A +E+R     +        +P + +           D      L    
Sbjct: 52  SAVLAVTFTNKAAKEMRERVAALLEDVPLDSMPTVSTFHSFCVRLLRRDGDP---LARVR 108

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               R   +       +          + E       +  + I  AKN       +  + 
Sbjct: 109 PGFTRRFTIYDDEDQLQIIKAAYRTLGFDEKEFMQYRAALSRISHAKNTKVTPQEMFRDA 168

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWT--ERLVELNASSPVGYQIALMRAEAEH 221
              E                 A   +   K       L   +        +    A  E 
Sbjct: 169 VNKES-------------EAVAALYEEYEKALRNANALDFDDLLLEAVRLLRTDDATRES 215

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +     ++I     +  +   LM  +        V+   D       W     K+   
Sbjct: 216 WNR-RLSYVMIDEYQDTNRSQYELMRLLTEQHQNVCVV--GDEDQSIYSWRGADIKNILD 272

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                    +P+    +L       +  +   G V      R                  
Sbjct: 273 FEK-----DYPRAKTIRLEQNYRSTKNILAAAGAVVENNKARK----------------- 310

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLAR 400
                 K+         + L    +   EA+ IA      L        A++    + +R
Sbjct: 311 ----GKKLWTESDSGELLGLYAGYDSENEALFIADTTEKYLASNPGDHVAILYRTNSQSR 366

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
           +++  L R+G   ++  G           + + L       D +++  ++  P       
Sbjct: 367 QIEEALRRYGRKYNVVGGFSFYQRAEIKDMVAYLKLASSNVDSVSLMRVINTP------- 419

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                           R  ++                               S E     
Sbjct: 420 ---ARGIGRTTVEQIERYGRDH------------------------GLNLWESIERIIDD 452

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
             L       +          +      S+ D  +  +          +RK+       E
Sbjct: 453 QQLSTRSQSSLVVFRNLIQELSLVASTSSLPDLIRHILE------RTGYRKMLQQEKTPE 506

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
            +T      ++I   +          D +        V    E+S  + ++    ++ L 
Sbjct: 507 SETRLENLDELINAAADAHERGETLGDFLDNAALVADVDSYDEQSP-VTLMTLHNAKGLE 565

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
           F  + L G+  G++P + + N   +   +  L                 M    + L+ T
Sbjct: 566 FPLVFLSGMELGLFPHSRSMNSEEALEEERRLC-------------YVGMTRARKKLVLT 612

Query: 701 RS---LRENNIPTI---ASRWLQRLLVLG 723
            +    R          AS +L  +    
Sbjct: 613 WAKMRRRFGGGEQERSTASWFLSEVPENL 641


>gi|322516818|ref|ZP_08069720.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis ATCC
           49124]
 gi|322124655|gb|EFX96119.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis ATCC
           49124]
          Length = 773

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 76/690 (11%), Positives = 194/690 (28%), Gaps = 120/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R     +    +T   +I +   +       +       N     
Sbjct: 58  NILAITFTNKAAREMRER--AMALNPATSETLIATFHSMCVRILRRE-ADHIGYNRNFTI 114

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++             L P+       +    I  AKN  D++D +  E
Sbjct: 115 VDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLLDEVAYE 161

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            +  +    +                    K + E L    A       +  +R   ++ 
Sbjct: 162 HQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNP 206

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 207 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 264

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  +  L +     ++ ++    V      R              
Sbjct: 265 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANEVIKNNRNRRPK----------- 308

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
                     K+         +    A++ER+EAI +A  +   + E     K  A++  
Sbjct: 309 ----------KLWTQNDDGEQIVYYRANDERDEAIFVASTIDNIVREEGKNFKDFAVLYR 358

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + S LN I   +D ++   +V  P 
Sbjct: 359 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISFERVVNEP- 417

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                 +       +  +++   ++  +  + +          +
Sbjct: 418 ----------------------KRGVGPGTLEKIRTFAYEQNMSLLDASANIMLSPIKGK 455

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                       +      ++  +   +      ++      +                 
Sbjct: 456 A--------AQGVYDFANTILNLREQLDGLSITETVEAILDKSGYLDALSMQQTLESQAR 507

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  +++  F +     +  +         +  L           +++ + ++   
Sbjct: 508 IENIEEFMSVTKNFDETNTDVTEDETGIDRLGRFLNDLALIADTDDGDMEAAEVTLMTLH 567

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P + A               +  E+   +    +      
Sbjct: 568 AAKGLEFPVVFLIGMEEGVFPLSRAS--------------EDPEELEEERRLAYVGITRA 613

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRL 719
             +++     TR+L         SR+L+ +
Sbjct: 614 EEILFLTNANTRTLFGKTSYNRPSRFLREI 643


>gi|325971006|ref|YP_004247197.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
 gi|324026244|gb|ADY13003.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
          Length = 672

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 66/573 (11%), Positives = 154/573 (26%), Gaps = 83/573 (14%)

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPAT 242
           +K     + + L   NA       +  +    +        +     I++     +  + 
Sbjct: 162 IKNLYSEYEKHLKAYNALDFDDLIMKPLDLFEKRPEVLEALRSRYTHILVDEFQDTSLSQ 221

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
            R++  +A       V+   D       W     ++  +   +            +L   
Sbjct: 222 YRMVELLAQESRNLCVV--GDDDQSIYSWRGANYENLVMFERDFP---------ERLEVK 270

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
           L+        +   +N +   + V  +  L  D                     S + LI
Sbjct: 271 LERNYRSTGTILEAANSLIVNNQVRKEKKLWTD-----------------SGKGSSIRLI 313

Query: 363 EADNEREEAISIAIALRMSLDENKKKSA---LITADRNLARRVKLELTRFGINIDISAGI 419
              N+ +EA  IA  + M   +  +  +   ++     L   ++ + T  GI   ++ G 
Sbjct: 314 HPANDEDEASVIADEILMIHKKEDRPFSDFGVLVRTNGLIDSLETKFTERGIPSQVTGGQ 373

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
                     + S L  I   +D + +  ++  P    G       R        +L   
Sbjct: 374 SFFDRKEIRDIISYLKVIANQDDDINLLRVINTPRRGIGRTTLEKMRKVADDHHCSLYSA 433

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                +M + +    +   QK       +      +  E        +   I  +     
Sbjct: 434 LT---LMSVATDGQIKEGMQKTLKRFADFIEEYHHQLFETRTQRNMVLRTLIQEIGYKAY 490

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
            +                             +    +  +    L  + ++        K
Sbjct: 491 LE-----------------------AEHPDNENVVAYKMKGINMLCDMLARWERNPENAK 527

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           A+  ++   + R+        + E +  + ++    S+ L FDT+ L G+ +   P   A
Sbjct: 528 ASIFDY---LNRISLAGKESTEQEDAGKIALMTIHASKGLEFDTVYLAGVEDQYIPHARA 584

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTI----ASR 714
                          +       +    +      R  LI +   +            SR
Sbjct: 585 IE-------------ENPANIDEERRLFYVAITRARRSLIISTCEKRKKGHDEVTSLPSR 631

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
           +L+ +      +     +   +  +D  R L  
Sbjct: 632 FLEEIPKALFDEEDPAKELSSEQVVDKLRLLRE 664


>gi|294507833|ref|YP_003571891.1| ATP-dependent exoDNAse [Salinibacter ruber M8]
 gi|294344161|emb|CBH24939.1| ATP-dependent exoDNAse [Salinibacter ruber M8]
          Length = 1141

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 97/930 (10%), Positives = 227/930 (24%), Gaps = 95/930 (10%)

Query: 56   AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115
            A   +R+E      +    LP  +      +     D          V    +  EL  L
Sbjct: 219  AAAAVRAELDAWQARCPDALPEGR-----DDAMQAFDRAERLIAQTGVETPAQRAELLEL 273

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
                 ++    +       P +      +A   A+ L D        +     L   +  
Sbjct: 274  FAGVADEESADVTLKCWRGPHT------DAYDWARTLRDEHLPALVRDVVQPALRRWRAY 327

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPI 230
             +         F++ A + +          +             +H      ++     +
Sbjct: 328  VH----EEVVAFVRPAVERFASLRQAEGRLTFHDLLACTRDLLRDHPGLRTTIQERHPRL 383

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAI-----------VLPGLDCHIPTAIWNTITEKST 279
            ++     + P  A L+  + +                 +    D       +     +  
Sbjct: 384  LVDEFQDTDPLQAELLFYLTSRNPTETTWTDCRPLPGSLFIVGDDKQSIYRFRRADMEVF 443

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDI--KREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                     +      L K    LD+     D        +            F P  T+
Sbjct: 444  EAVGERIEDTGGEAVMLTKNFRSLDVICDWCDAAFGALFDDADLMDRQATYTPFDPQRTT 503

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA--------------LRMSLD 383
            +     +    +  ++  +     I A +    A  I  A                 +  
Sbjct: 504  ERDVDGVRRINLDKVRGNWG--TDIAAQDAGRIARFIQGARDGGRSGRGADRHGALFAGG 561

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
             +     ++T  ++        L   GI   ++    L        L  LL    + +D 
Sbjct: 562  ADYSDFLILTRTKSRLSVYAEALAERGIPYTVTGSEDLGEAAELKALVDLLTCALRPDDE 621

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            +A    +K PL      + Y                +    +       L     Q+   
Sbjct: 622  VACVAYLKGPLVGASDDDLYRFSRAGGEF------GRMHEPVPASVLEALPHETAQRFEE 675

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
               H ++      ++   + ++ ++  +  L       ++  G+L      +        
Sbjct: 676  AFGHLRAARRRLHEQRPGVAIEQLIDDLGLLAGAAHPPDAAEGSLRAGRVLRTITYVQDL 735

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI--ITRLIDGETVKPK 621
                          +        +    +ETG       +       +   +        
Sbjct: 736  AAQGLGWAEVLDELQRVVDGEEEVDGMTLETGGDDAVRVMNVHQAKGLEAPVVFLADPYS 795

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 ++      E+  L    +   G  E V          +    +S    +   +  
Sbjct: 796  RSGGPSVRRHLRREAGELVAPIVQGSGYRERVTHPPLGWERPVDGRDESFRESEERHEAA 855

Query: 682  GQAAHDFEMANGTRHLIY--TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
             +    +  A   ++L+   T   + ++ P                              
Sbjct: 856  EERRLLYVAATRAQNLLVVSTYPEKPDDGPWAPLYPHLD--------------------A 895

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA--RRILKLDFIP 797
                +L     +P   RP+   P     R    ++++      Y   +            
Sbjct: 896  ADVPELGRPDAEPSSDRPEAPAPALTDQRAGRDAQLEAQSRPSYRTESVTDGDRASPVRS 955

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                +      G+  H ++ + ++        +     + +  S  E+   P   D +  
Sbjct: 956  SLASEGYGEAFGSAIHQLLEQCVRTGRPTPWTD-----ESVAASVLERTGAPNTPDAVE- 1009

Query: 858  HLFHKISHSFLEHE-EKIQSSIEKIFVNIPAKMAIE-SIGIHLTGFADRIDLLKSGFVDI 915
                 +   FL+        + ++++   P   A+     +   G  D +     G   +
Sbjct: 1010 -RATTMVQRFLDSRVWARVQAADRVYAEYPIAHAVRRETPVVRRGVID-LAWRADGRWTL 1067

Query: 916  TDYKT----GDNPKKETAQKLIDPQLSLEA 941
             D+KT    G  P+  +       QL   A
Sbjct: 1068 VDHKTDRVQGRPPETLSPDHAYVQQLQAYA 1097



 Score = 38.4 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 74/743 (9%), Positives = 157/743 (21%), Gaps = 52/743 (6%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F R    +     LV        + + +  +T    T++A  E+   F E   +  T LP
Sbjct: 41  FVRAAAGSGKTTALVARMVALVRSGVPVEDLTAITFTRKAAGEMSKRFYEELRRAQTALP 100

Query: 77  I-------------------IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL 117
                               I ++            + +      V+ ++   E      
Sbjct: 101 AEGPQRRRVTAALRDAQQAFIGTIHAFCARLLRERPIAADLPPGFVAGLEDREE------ 154

Query: 118 IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY 177
             R       +D         P        L     D+    E   +  E    +     
Sbjct: 155 --RELRDRAWQDYLQTVRADRPARMEALTSLGLEPEDLDAYFERLCEHPELDPYVNAPDT 212

Query: 178 GMWWLLAADFLKIASKYWTERLVE---LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234
                 AA  ++     W  R  +         +       R  A+  ++       +  
Sbjct: 213 VPDLTQAAAAVRAELDAWQARCPDALPEGRDDAMQAFDRAERLIAQTGVETPAQRAELLE 272

Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ- 293
               +        T+                +       +                H + 
Sbjct: 273 LFAGVADEESADVTLKCWRGPHTDAYDWARTLRDEHLPALVRDVVQPALRRWRAYVHEEV 332

Query: 294 -YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
              +   ++     R+   RL         R ++     L     +     +++      
Sbjct: 333 VAFVRPAVERFASLRQAEGRLTFHDLLACTRDLLRDHPGLRTTIQERHPRLLVDEFQDTD 392

Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
                 +  + + N  E   +    L  SL         I       R         G  
Sbjct: 393 PLQAELLFYLTSRNPTETTWTDCRPLPGSLFIVGDDKQSIYR---FRRADMEVFEAVGER 449

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
           I+ + G  +  T +   L  + +                  L          +       
Sbjct: 450 IEDTGGEAVMLTKNFRSLDVICDWCDAAF----------GALFDDADLMDRQATYTPFDP 499

Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
                 + +    ++L  +  +              +      D   +    D       
Sbjct: 500 QRTTERDVDGVRRINLDKVRGNWGTDIAAQDAGRIARFIQGARDGGRSGRGADRHGALFA 559

Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
               Y      T     +S + +          +     L      +    L +   +  
Sbjct: 560 GGADYSDFLILTRTKSRLSVYAEALAERGIPYTVTGSEDLGEAAELKALVDLLTCALRPD 619

Query: 593 ETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
           +  +C+             D+      G       E      +          F+    G
Sbjct: 620 DEVACVAYLKGPLVGASDDDLYRFSRAGGEFGRMHEPVPASVLEALPHETAQRFEEAF-G 678

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
            L       +  +       +  DL L     +   AA     A G      T       
Sbjct: 679 HLRAARRRLHEQRPGVAIEQLIDDLGLLAGAAHPPDAAEGSLRA-GRVLRTITYVQDLAA 737

Query: 708 IPTIASRWLQRLLVLGGTDFFDN 730
                +  L  L  +   +   +
Sbjct: 738 QGLGWAEVLDELQRVVDGEEEVD 760


>gi|315498764|ref|YP_004087568.1| uvrd/rep helicase [Asticcacaulis excentricus CB 48]
 gi|315416776|gb|ADU13417.1| UvrD/REP helicase [Asticcacaulis excentricus CB 48]
          Length = 772

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 90/777 (11%), Positives = 196/777 (25%), Gaps = 119/777 (15%)

Query: 21  MIPALLNGTLVENFRYDPLNPLLLAS---VTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
           +  A    T V   R   +    LA    +     T +A +E+R     + G  +  L  
Sbjct: 46  LAGAGTGKTRVLTTRIAHILAQGLARPWEILCVTFTNKAAREMRERTTRLVGPSAEGLSN 105

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
           + +   +  +                  ++R  EL  L   +     D    L  +   +
Sbjct: 106 LGTFHSIAAQM-----------------LRRHAELVGLKSSFNIIDDDDQTRLLKQIMEA 148

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
             I         K +A  +D  + +    + +  +  ++   +              + E
Sbjct: 149 RRIDTKRFPP--KLMAHFVDQWKNKGLTPDKVAKMSADEGAQFAFNKG---PELYAEYQE 203

Query: 198 RLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANH 252
           RL  LNA       +  ++  +EH             +++     +  A    +  + N 
Sbjct: 204 RLRVLNACDFGDLLLHTLKIFSEHTDILEHYHRRFKYVLVDEYQDTNIAQYLWLRILTNA 263

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                 +   D       W      +            +P   + +L       +  +  
Sbjct: 264 NRNLCCV--GDDDQSIYGWRGAEVDNILKFE-----RDYPGAKVIRLERNYRSTQHILSA 316

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
              +      R                     L   +   Q+    V +    +   EA 
Sbjct: 317 ASGLIRANSAR---------------------LGKTLFTDQQGGEKVRVQGLWDGAAEAQ 355

Query: 373 SIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            +A  +     E       A++       R  +       I   +  G            
Sbjct: 356 GVAEDIERLKREGRAYSDMAVLVRASFQMRAFEERFLMLQIPYVVVGGPRFFERAEIRDA 415

Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            + L  I   +D +A   +V  P    G         +  L      G      + DL  
Sbjct: 416 IAYLRLIQSEDDDLAFERIVNVPKRGIGDATVQKLLMQARL-----AGQSVMAAVRDLVQ 470

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                   +           R     K                                 
Sbjct: 471 TDELPARAKTPLIGFLRDYDRWVAALKS-------------------------------- 498

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
                     L  V  +          +  G T      +++      + N   +++ ++
Sbjct: 499 ----TSHDALLDMVLTESGYYDMQRADKTSGGTRIDNLKEMMNAMQDFE-NLEAYLEHVS 553

Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
            ++D      +    +++ I     ++ L F  + L G  EGV+P   + +         
Sbjct: 554 LVMD----LERDNGENSVRISTLHAAKGLEFPVVFLPGWEEGVFPSQRSMD--------- 600

Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN--IPTIASRWLQRLLVLGGTDFF 728
           +  LK  E+    A      A     + +  + +        I SR++  +  +   +  
Sbjct: 601 ENGLKGLEEERRLAYVGLTRAREIARVSFVANRQVFGRWTSQIPSRFIDEMP-IDHVEAT 659

Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                    +     + D    QP++ + +            S  ++ +L   P   
Sbjct: 660 SQTGYNQAGWQSQESRWDRAGYQPNHTKSEAK-AEGRFSERLSGVDMSRLEKKPQPH 715


>gi|206976508|ref|ZP_03237414.1| ATP-dependent nuclease, subunit A [Bacillus cereus H3081.97]
 gi|222094863|ref|YP_002528923.1| ATP-dependent nuclease, subunit a [Bacillus cereus Q1]
 gi|251764505|sp|B9ITE9|ADDA_BACCQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|206745191|gb|EDZ56592.1| ATP-dependent nuclease, subunit A [Bacillus cereus H3081.97]
 gi|221238921|gb|ACM11631.1| ATP-dependent nuclease, subunit A [Bacillus cereus Q1]
          Length = 1241

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 91/899 (10%), Positives = 213/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E   +G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEEGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHIRAGASCYLDWI 927

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + ++P         W   ++        + +++  Q  L+  R
Sbjct: 928  APSLYRHRDSEILLELGQGSVPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      +   K       +       + S   +                ++ +    R 
Sbjct: 988  EKKAVPLESERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIRTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITEEVIREQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGQSGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKS 1218


>gi|163939035|ref|YP_001643919.1| recombination helicase AddA [Bacillus weihenstephanensis KBAB4]
 gi|251764507|sp|A9VJ02|ADDA_BACWK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|163861232|gb|ABY42291.1| Recombination helicase AddA [Bacillus weihenstephanensis KBAB4]
          Length = 1241

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 95/893 (10%), Positives = 213/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDFESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYSTH-------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGSGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GASYPEGEDVAAELLCIQQTEEEVQDGEEGAEVEKAQLEARLMAQRIKAMVDSGYAVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 693

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 694  LHDKLEWFYKLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 753

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 754  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 813

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 814  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 873

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM----A 691
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 874  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 933

Query: 692  NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            +    ++                   ++ V+ G D       + +         D     
Sbjct: 934  HRDSEMLLELGQGNIPGEIYEYSASWKVEVVEGKDLLAPEPVQEEKQELLEALRDKKAVP 993

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 994  LESERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRAPIKTRP 1053

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 1054 RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITIEVLQEQIARMVNKELL--TFEQA 1106

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIHLTGFAD 903
                  K+   F     K   + + +   +P  M +                I + G  D
Sbjct: 1107 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGKKGESILVQGVID 1166

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1167 CMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPTLEDRYKVQLSLYAKALEKS 1218


>gi|33151764|ref|NP_873117.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
 gi|33147985|gb|AAP95506.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
          Length = 672

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 94/697 (13%), Positives = 191/697 (27%), Gaps = 126/697 (18%)

Query: 41  PLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN 100
           P  +A+VT    T +A +E+R       GK+++    I +   +  E             
Sbjct: 47  PKQIAAVT---FTNKAAREIRERVAHSIGKENSKGLTISTFHTLGFE------------- 90

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
                      L R   +   K    + D + +  L   + P         L  ++  I 
Sbjct: 91  ----------ILKREYKLLGFKAGMTLFDEHDQMALLKHLLPEKVTEDKDLLKALMSQIS 140

Query: 161 TEEKKWEDLHALKNEKYGMWWL-LAADFLKIASKYWTERLVELNASS-------PVGYQI 212
             +        L  E                  + +  +L   NA         PV    
Sbjct: 141 YWKNDL-----LSPEMVINHCHSERDRIFSNFYQLYQNQLKAYNALDFDDLIMLPVLLFR 195

Query: 213 ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                +A    K     +++     +  +   L+  +             D       W 
Sbjct: 196 QYPEVKARWQQK--IRYLLVDEYQDTNTSQYELIKLIVGQNG--HFTVVGDDDQSIYSWR 251

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++                 + +L D  D+    +++    S        ++  + +
Sbjct: 252 GAKPEN-----------------MQRLRDDFDLNVIKLEQNYRSS------QRILHSANI 288

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL---RMSLDENKKKS 389
             D +D      L + +   +K    + +IEA NE  EA  +   L   R +     K  
Sbjct: 289 LIDNNDHLFQKRLFSTLAEGEK----LNVIEAKNEEHEAERVVGELIAHRFANKTQYKDY 344

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A++    + +R ++  L +  I   IS G      +    + + L  I   ND  A   +
Sbjct: 345 AILYRGNHQSRLLEKTLMQNRIPYKISGGTSFFARVEIKDMMAYLRLIVNQNDDAAFLRI 404

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
           V  P                                 ++ +  L+++    N  H+  + 
Sbjct: 405 VNTP-------------------------------KREIGAATLEKLGQLANEKHISLFD 433

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
           +    E  +         LQ     +    ++      L         +     +     
Sbjct: 434 TIFDFELIQRITPKAYQALQNFANWIVMIADQAERADPLEAVKQLLANIQYEAYLYEHAT 493

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                       +TL      ++E     +   +  +     L D        +++  + 
Sbjct: 494 TPKAAEMQSRNVQTLFEWVQNMLEGDELNEPMNLIQVVNRLTLRDMLERGEDDDEADQVQ 553

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
           ++    S+ L F  + L G+ EG+ P  T+ +                E  + +      
Sbjct: 554 LMTLHASKGLEFPHVFLIGMEEGILPHQTSID----------------EDNVEEERRLAY 597

Query: 690 MANGTRHLIYTRS---LRENNIP---TIASRWLQRLL 720
           +         T S    R          ASR+L  L 
Sbjct: 598 VGITRAQQTLTFSLCKERRQYGEIIKPEASRFLMELP 634


>gi|303233886|ref|ZP_07320535.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
 gi|302494811|gb|EFL54568.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
          Length = 892

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 62/460 (13%), Positives = 136/460 (29%), Gaps = 67/460 (14%)

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            +  LI    V         + I    + RL N+D L +  +N+ V P     + F +   
Sbjct: 448  LIDLIKNLKVDSTDYLVDGIRIYSLTDIRLSNYDVLYVVNMNDDVIPGKMNYDFFNNEDN 507

Query: 669  QSDLN-------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA--------- 712
               L             +          ++   R +  + +   N    +          
Sbjct: 508  IVFLQNNGIDILSDADNRRRNIDRFIDAVSRADRKIYLSYNTESNVKSRLILDKNIKQNQ 567

Query: 713  ------SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                  S+ ++++            K   + +L+       +     ++           
Sbjct: 568  KIAKINSQNIKKVDTKKLHSISVYEKYSLKQHLNRIESRISSKDISDFE-VDDKTTQYIL 626

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI------ 820
             +  S ++++     P   Y R  LKL      +      D GT+ HN + E        
Sbjct: 627  NKELSSTKLETYFECPMKFYFRYYLKLRPQIKSRL----LDIGTILHNTLEEFYGINISQ 682

Query: 821  -KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKI--- 874
             K  I+         +  ++ + FEK  L   I         +      F+  +      
Sbjct: 683  IKDAIDGKCELDISSLDGLLKNSFEKFGLNTDIKENEFDYEKYLNKLKDFVRTDIYNMKN 742

Query: 875  -QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQK 931
             +       +     ++++      TG  DR+D   SG + + DYK   N   K +   K
Sbjct: 743  EREKFYPFKLEEDFIISLDEST-KFTGRIDRVDKTDSGKIRLIDYKLSKNSFRKAKDLDK 801

Query: 932  LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE--- 988
                Q ++ +               V +  Y  +K   + + + N  K    + + +   
Sbjct: 802  NKGFQFAIYS-----------SYGDVVSCKYKSIKDNEEYEFLQNISKAQLDEIMIQKVN 850

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            +  +N+      ++  +          + S    +Y+ + 
Sbjct: 851  EFRENIRNKRLFIKASD----------DNSCKYCDYNKIC 880


>gi|170726987|ref|YP_001761013.1| exodeoxyribonuclease V subunit gamma [Shewanella woodyi ATCC 51908]
 gi|169812334|gb|ACA86918.1| exodeoxyribonuclease V, gamma subunit [Shewanella woodyi ATCC
           51908]
          Length = 1190

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 105/891 (11%), Positives = 231/891 (25%), Gaps = 86/891 (9%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPII- 78
            AL      E     P  PLL+    I V +      LR E        + +   LP   
Sbjct: 11  EALSAQLAQELQTPIPGMPLLMPE-QILVQSPGMSTWLRLEIASKNKIAAALEFPLPSSF 69

Query: 79  ------KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
                   L DV +E       +++ L   +  +  + E A L       L  + +    
Sbjct: 70  IWQLCHILLPDVPKENAFTKPSMTWKLMELLPELLDIEEFAPLKNYLNPNLNSVSEQSSD 129

Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN------EKYGMWWLLAAD 186
                 P  P     L   +ADI D        W               +          
Sbjct: 130 NELDERPEEPLKLFQLCGQIADIFDQYLVYRPDWIAAWEASEPTLPPKGEKLAPAQAWQP 189

Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATAR 244
            L  A   +    +  +         +L  A  +           + + G +   P T  
Sbjct: 190 ILWRALIKFNNERLNKSRYHRANLHQSLFDALDDPNTSLEGLPRRLFVFGISSMAPQTLD 249

Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT-----SSNTTYSTHPQYSLAKL 299
           ++  +A   +  ++      H    I +        +           +    +     L
Sbjct: 250 VLYHLAKRIDVIMLNLSPCQHYWGDIIDPRLRARMALEYANKHKLEAQWEDKLEVGNPLL 309

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF--- 356
            +   + RE +  +  +  E    +    +     +       DILE +           
Sbjct: 310 ANNGKMGRELLDLILELPEEHTNFNFECYQDPGVKNLLQGVQRDILELETRGRSLGPDAS 369

Query: 357 ---------------SDVALIEADNEREEAISIAIALRMSLDENK---------KKSALI 392
                            + L    +   E  ++   L   L             K   ++
Sbjct: 370 LYLTLDGRRPLTIDDDSLTLRSCHSPLREIETLHDHLLEMLSREPVDPNDPLLAKDIVIM 429

Query: 393 TADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
             D          +         I   I+       +   +   ++L           I 
Sbjct: 430 LPDVAAYAPYIDAVFSAKQGAHYIPYAIADRGAAQESPLINSFLNILAINQSRFALTDIL 489

Query: 448 TLVKHP--LAKFGFPEKYLSRAKNALELVALRGNKNS--YDIMDLKSLVLDRIATQKNNT 503
            +++ P  L +F   +  L   +  LE   +R  ++        L +   +  A      
Sbjct: 490 GILEVPAVLRRFELDDDDLMMIRQWLEQAGVRWGRDETSRAAQSLPAFDKNSWAFGIKRL 549

Query: 504 HVPHWQSRLSEEDKELAVLL------VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
            + +  S  +    +   ++         + + +  +      +        I       
Sbjct: 550 ILGYAFSDDAPLYHDTLTVMGIEGQSAQALGKLLNFIEALDEYRLQLGQTCEIEVRMAQL 609

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              L +    +  +   L  +   + +S L +++ + G     N     +     +    
Sbjct: 610 NQLLDDFYEVDDEERMQL--QAIREAISKLKTELSDAGQITPLNTQVLQNWFNSTLSESR 667

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
           V  +     ++     +  R + F  + L G+N+G++P+      F    + +    +  
Sbjct: 668 VGQRYLAG-SVNFCTLMPMRSIPFKVVCLVGMNDGIYPRVQHPVGF---DLVAQFGPRKG 723

Query: 678 EKYIGQAAHDFEM---ANGTRHLIYTR--SLRENNIPTIASRWLQRL----LVLGGTDFF 728
           ++          +    +    L  +       +N   I S  +  L     +    + F
Sbjct: 724 DRSRRLDDRYLFLEAILSAREQLYISYIGHSERDNSERIPSMLVSELVEYCQLCYLPETF 783

Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
           + L       +                  +P  P + +      SEI   I    +  A+
Sbjct: 784 NKLDSSDAETVIKVIPAIEKAVHQQLLIEQPLQPFDERLYVSPASEIDGAIQLKQSYSAQ 843

Query: 789 RI---LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
                         ++ P   D G          +   ++    EI+ L++
Sbjct: 844 WCPTKAAGQSADGLERTPRFIDNGVTITQATE--LADSLDSQELEISALIR 892


>gi|187250626|ref|YP_001875108.1| superfamily I DNA and RNA helicase [Elusimicrobium minutum Pei191]
 gi|186970786|gb|ACC97771.1| Superfamily I DNA and RNA helicase [Elusimicrobium minutum Pei191]
          Length = 786

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 57/694 (8%), Positives = 177/694 (25%), Gaps = 111/694 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  ++R     +   +S  +  I +                      V  
Sbjct: 55  RILAVTFTNKAAAQMRERVEALAPGQSGRV-WIHTFHSFG-----------------VRL 96

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +++   L +L   +   + D  +     + +   +   +A         +I   + +   
Sbjct: 97  LRQNAHLLKLTKDFA--IYDESEQKKIITLVLQEMGQKDAKKEINQYISLISRAKDDMID 154

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            E            + + AA+      K +  +L    A       +        +    
Sbjct: 155 PESFAISALASNIDFKIRAAE----VYKRYQNKLNAAGALDFGDLLVKTAELLKNNEDVR 210

Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    I++     +      +  T+A       V+   D       W     ++  
Sbjct: 211 EYYQNIFQHILVDEYQDTNHTQYIITRTLAYKHRNLCVV--GDPDQSIYSWRGANIRNIL 268

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +   +          +  L+      + + + SN++  ++       L  + +   
Sbjct: 269 EFEKDFPDAK---------IITLEQNYRSTQIILDSSNKLIKKNKKRKDKSLYSNKTSGE 319

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
                             + + E   E EEA   A  +   +++       A+       
Sbjct: 320 P-----------------IEVRELLTEGEEARWTAQNIANLIEDGASLNDIAVFYRTNAQ 362

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R  +    ++ +   +   +          +      +    D +++  ++  P    G
Sbjct: 363 SRNFEDNFRKYQLPYRLIGAVRFYDRREIKDILGYARVLVNPLDTVSLLRILNTPKRGIG 422

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
              +        L  ++L         ++  +    R A +  N               +
Sbjct: 423 KTAEEKFLEYANLHNISLYQALQRSAFVEGLTPTARRAAQEFINLMDTLRLELKVTSPTD 482

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           +   ++             + +  +     ++ +         + +   E     + + +
Sbjct: 483 IVNKILTLSGYWKAVEDEVEKDLEAGARLDNLQELVNAVKEYEERMARTEREASLSDFVQ 542

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E                                 +     + +   +  + ++    ++ 
Sbjct: 543 EIS-------------------------------LITGADEKQDSSAGAVTLMTVHLAKG 571

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F  + + GL EG++P ++  +                +    +    +      +  +
Sbjct: 572 LEFPVVFVSGLEEGLFPLSSKDD----------------DDLEEERRLCYVAMTRAKDRL 615

Query: 699 Y-----TRSLRENNIPTIASRWLQRLLVLGGTDF 727
           +     TR +       + SR+L    ++     
Sbjct: 616 FMTYTSTRRIFGKMYTNLPSRFLFESGLITEEQE 649


>gi|73541802|ref|YP_296322.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ralstonia eutropha
            JMP134]
 gi|72119215|gb|AAZ61478.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ralstonia eutropha
            JMP134]
          Length = 1197

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 89/804 (11%), Positives = 190/804 (23%), Gaps = 96/804 (11%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK--------GTKGPIIIAG 234
                      + + +   E  A      +       A+                 +++  
Sbjct: 362  ALYRLGNALLERYQQYKSEQRAMDFADLEWQAACLMADEETATYLQVRLDARYRHLLLDE 421

Query: 235  STGSIPATARLMSTV----ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
               + P   R++       A       V    D       +     +     S+      
Sbjct: 422  FQDTNPLQWRILQGWLAGYAGLGERPTVFLVGDPKQSIYRFRRADARLFGAASTMLQAEF 481

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
                           +          S    GR  +                 +   +  
Sbjct: 482  GATVLRTNRTRRNRAEVLAWVNAVFDSARAEGRYPLYETQTTALPEGGGPVWLLPLVEAE 541

Query: 351  NIQKCFSDVALIEADN----------------------EREEAISIAIALRMSLDENK-- 386
            +        A   AD+                        EE   +A  LR   D     
Sbjct: 542  DKGDEALANASESADDATSEVGHRDTLLQPRRQEGDSLRLEEGRRVAAWLRHIHDTVPVH 601

Query: 387  ----------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                          L+   +      +  L   GI         L  TL +  L++LL  
Sbjct: 602  EGGEQRPARWSDMHLLVRRKTHLADYERALREAGIPCLSPRRGGLLATLEALDLSALLAF 661

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            +      + +A ++K PL      +               R          +++  +   
Sbjct: 662  LMTPESDLDLAHVLKSPLVGATDDDLIALSQLEGERGWWTR----------IEASGVPAS 711

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             +      V   +  L     +    L+D I         Y            +++    
Sbjct: 712  CSDAVRDGVARLRHWLRLAPHQPVHDLIDQIFHGGEVRRRYAEAAPPDIREQVLANLDAF 771

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                L    LD  R      F +E + +     +       +  +A           +  
Sbjct: 772  LKLSLD---LDGGRYPSLPKFIDELQEIRRGDEQESPDEGGMAEDA-----------EPT 817

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK------------NTAKNPFL 664
               P       + IL    ++ L    ++L   N                  +     F 
Sbjct: 818  DEDPSQAGLDAVHILTVHAAKGLEAPFVVLLDANHSDPAPDRGGILIDWSPESRVPRHFS 877

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
            +   +S+  L  A  +  +AA          ++  TR+ +   +  +  R  +      G
Sbjct: 878  AYGKRSERGLARAPLFEAEAALGERENWNLLYVAMTRAQQGLLVSGVKGRASRNAEAESG 937

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTK-----QPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            ++   +   R Q         D             +  +P    + + R    +++ +  
Sbjct: 938  SEISGSWYVRLQAAGVGAAVADRPPVEAGNVPAVSRASEPVRFTDFRLRYRDAADVARFA 997

Query: 780  NDPYAVYARRIL-KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
             D   + A  +    D       +      G L H ++  + +     +  +    ++ +
Sbjct: 998  EDADDLDAPLLETSGDETEGIVFNAAAARHGELIHALLERITRY---PDAFDAVPDVETV 1054

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSF---LEHEEKIQSSIEKIFVNIPAKMAIESIG 895
            +          P     W+    +   +    L  E           V+   ++ +    
Sbjct: 1055 LRWFPLAGAGSPGAKQAWQAQIEEAVEAVRTMLSAEALFPLLRSADAVSARNEVELYDGR 1114

Query: 896  IHLTGFADRIDLLKSGFVDITDYK 919
              L    DR+       V I DYK
Sbjct: 1115 GRL-LRIDRLVEFDD-RVVIIDYK 1136


>gi|218459328|ref|ZP_03499419.1| hypothetical protein RetlK5_07500 [Rhizobium etli Kim 5]
          Length = 189

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 76/189 (40%), Positives = 105/189 (55%), Gaps = 4/189 (2%)

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            L++ VA+   G IVLPGLD  +P   W  +  +       N    +HPQY L+ LL  L
Sbjct: 1   DLIAAVAHLSEGVIVLPGLDLAMPEGHWQMVAPEPAPGQHLNPASRSHPQYGLSSLLKRL 60

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
            + R DV  L     ++  R+ ++S++  P + +    T   E     +   F+DV+LIE
Sbjct: 61  RLTRADVSILDRPEADLDRRAEILSRALAPAEATSDWGTWKSELPGGALTSAFNDVSLIE 120

Query: 364 ADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGINIDISAGI 419
           A NEREEA +IA+ALR++L+   +     +ALIT DRNLARRV  EL+RFGI  D S G 
Sbjct: 121 AANEREEATAIAVALRLALERPGQDGESRAALITPDRNLARRVMAELSRFGILADDSGGT 180

Query: 420 PLSTTLHSS 428
           PLS T   S
Sbjct: 181 PLSATPQGS 189


>gi|238798592|ref|ZP_04642068.1| DNA helicase II [Yersinia mollaretii ATCC 43969]
 gi|238717548|gb|EEQ09388.1| DNA helicase II [Yersinia mollaretii ATCC 43969]
          Length = 721

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 70/685 (10%), Positives = 157/685 (22%), Gaps = 117/685 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP---VS 104
              T +A  E+R     + G          I +   +      A   +  NL      + 
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGTSQGGMW---IGTFHGLAHRLLRAH-HMDANLPQDFQILD 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +  +L  L RL+                                           + E  
Sbjct: 116 SDDQLRLLKRLVKALNLDEKQWPPRQAMWYINGK---------------------KDEGL 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
           + + + +  N     W            + + E              +            
Sbjct: 155 RPQHIESYGNPVEATWLR--------IYQAYQEACDRAGLVDFAELLLRAHELWLNKPHI 206

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +       +  +A   + A V+   D       W     ++ 
Sbjct: 207 LNHYRERFTNILVDEFQDTNNIQYAWIRLLAG--DRANVMIVGDDDQSIYGWRGAQVENI 264

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
               ++                            G  +  +       S      +    
Sbjct: 265 QRFLNDFP--------------------------GAETIRLEQNYRSTSNILTAANALIA 298

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397
            N   +   +         +++  A NE +EA  +   +R   D        A++     
Sbjct: 299 HNDGRMGKNLWTEGAEGEPISIYCAFNELDEARFVVNRIRAWQDNGGALNDCAILYRSNA 358

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L +  +   I  G             + L  +   ND  A   +V  P    
Sbjct: 359 QSRVLEEALLQTAMPYRIYGGQRFFERQEIKDALAYLRLVSNRNDDAAFERVVNTPTRGI 418

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G     + R          R          L    +                  L+ E  
Sbjct: 419 GDRTLDVVRQTAR-----DRQLTLWQSTRALLQEKVLAGRAASALQRFVELVDSLAHETA 473

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           ++ + +    +   + L +    +    G   + +  +L     Q    DE +       
Sbjct: 474 DMPLHVQTDRVIRDSGLWSMYEQEKGEKGQARVENLEELVNATRQYSYQDEDQ------- 526

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                                  + +     ++                 + ++    ++
Sbjct: 527 -----------------------DLMPLQAFLSHAALEAGEGQADAYQDAVQLMTLHSAK 563

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + + G+ E           F S++   +      E+ +        M   T   
Sbjct: 564 GLEFPQVFIVGMEE---------GMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLCY 614

Query: 698 IYTRSLRENNIPTIASRWLQRLLVL 722
             +R L    +    SR++  L   
Sbjct: 615 AESRRLYGKEVNHRPSRFIGELPQE 639


>gi|134098811|ref|YP_001104472.1| RecB family exonuclease [Saccharopolyspora erythraea NRRL 2338]
 gi|291005834|ref|ZP_06563807.1| RecB family exonuclease [Saccharopolyspora erythraea NRRL 2338]
 gi|133911434|emb|CAM01547.1| putative RecB family exonuclease [Saccharopolyspora erythraea NRRL
            2338]
          Length = 293

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 82/277 (29%), Gaps = 27/277 (9%)

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
               P   +    S S        P     R + +L   P          RGT+ H+++  
Sbjct: 9    APQPAGVRRPALSPSRAGDFKQCPLLYRFRAVDRLPETPTR-----AQVRGTVVHSVLER 63

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENL-----PPHIDIIWRHLFHKISHSFLE--HE 871
            L      +  PE    +                             +   +++ L+   E
Sbjct: 64   LFSLPTAERGPERARALLAPAWEDLLAAEPGLGELFDGAGDPELARWLDSANALLDSYFE 123

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
             +    +E     +  +  +ES G+ L GF DR+D+  +G + + DYKTG  P +E  + 
Sbjct: 124  LEDPRRLEPEACELRVETELES-GVLLRGFIDRVDVAPTGEIRLVDYKTGAAP-REIGEA 181

Query: 932  LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
                Q+   A  L               L  + L  K  +    ++ +    +   E   
Sbjct: 182  KAMFQMKFYALVLWR-----TRGEIPRQLLLMYLSDKQSLAYTPDEAELRRFERTLEAIW 236

Query: 992  KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            +        +    +        S       ++  L 
Sbjct: 237  Q-------AILKAGRTGDFRPNPSR-LCDYCDHKPLC 265


>gi|94500332|ref|ZP_01306865.1| exonuclease V gamma subunit [Oceanobacter sp. RED65]
 gi|94427631|gb|EAT12608.1| exonuclease V gamma subunit [Oceanobacter sp. RED65]
          Length = 1101

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 77/719 (10%), Positives = 179/719 (24%), Gaps = 59/719 (8%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
           TI V        L+ +  +  G  + I      +      +   DL+          +I 
Sbjct: 33  TIVVENPGLAHWLKMQLAQTLGIAANIQ---FPMPSRFFWQLQRDLVSDSQEAWQTESIF 89

Query: 108 RLLELARLILIWRNK---LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
               L   +    ++   L     +L  +              L+  +ADI D       
Sbjct: 90  NKDPLTWFVFDVLSESQILQRPGFELLADYVKDSDDESLRLYQLSTRIADIYDQYLVYRP 149

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
            W      +        L  A +     +   +  +      P+ ++ +L       L  
Sbjct: 150 DWIKSWEQQTFAIDGQPLEEARWQAELWQILRQEAISRGF--PLHHRASLTEDFLHLLQT 207

Query: 225 GT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     +I  G +         ++ +++H +  ++ P         I +   +   
Sbjct: 208 AESIESLPKDVIFFGFSTLPKNQIESLALLSSHCDVHLLTPNPSQTYWGDILDERLQARL 267

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +   +   +     S   LL  L    ++ +RL    +      + +            
Sbjct: 268 RLRGKSVPMAD----SGNALLASLGRMGQEYQRLLLDLDVYEEHDLFVDADDQSLLGRIQ 323

Query: 340 R---NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALIT 393
               +     ++  +I+     + ++   +   E   +   L   L   D + +   ++ 
Sbjct: 324 NQILHLQQSSSQPEHIEPNDDSIKIVGCHSAMREVEVLHDHLLDLLQQSDVDPQDIVVMI 383

Query: 394 ADRNLARRVKLEL----------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
            D          +           R  I   IS           +    LLN       +
Sbjct: 384 PDVARYAPYIDAVFQGGVDNRQGDRVRIPYSISDRPIQEEHPLINGFIQLLNMPKSRMSY 443

Query: 444 MAIATLVKHPLAKFGFPEKY--------LSRAKNALE-----LVALRGNKNSYDIMDLKS 490
             +  L++ P     F                            + +G         L  
Sbjct: 444 SEVIALLEIPAVYRKFDLDEKQLHQVKQWLELAAIRWGYDETHRSKQGLPKWQQNTWLHG 503

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLS 549
                +    +    P+ +        E    L    +   +  +        +T    S
Sbjct: 504 FQRLLMGYAFSERLAPNDELPFDISPVENVEGLEAASLGPVMNFVNELYEFVLATENLHS 563

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
            ++W       LQ        + P L    +        S+ +     I  +      ++
Sbjct: 564 CTEWRYFLQDSLQRFFDVTTEEQPVLEQIHQVLENWLQTSQYVNFSHDIPFS------VV 617

Query: 610 TRLIDGETVKPKIEKS---STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            + +     K    +      +     L  R + F  + + GLN+  +P+    N     
Sbjct: 618 YQGVQQGLQKNNGSQHFMIGRVNFCTLLPMRSIPFKYVAVLGLNDQEYPRTVPGNSLDLM 677

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN--IPTIASRWLQRLLVLG 723
                +  +              + +  + L  +    +     P   S  L   +   
Sbjct: 678 RFNRRVGDRNRRDEDRYL-FLEAILSARQGLWLSYRSLDQKQNTPMTPSVVLAEFMDYL 735


>gi|315187021|gb|EFU20778.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
          Length = 665

 Score = 91.1 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 74/715 (10%), Positives = 173/715 (24%), Gaps = 126/715 (17%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVS 104
           +     T +A +E+      +TGKK T L  + +      +     + L           
Sbjct: 55  ILALTFTNKAAREMWERVRTLTGKKLTNL-TVGTFHSFGAQILREHIHLLGYRPTFSIYD 113

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
              +   L + I                       +     +     + + I  I+T   
Sbjct: 114 TQDQKALLKQCIQE---------------------VGLNPDLANISTIRNTISAIKT--- 149

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                           W    +  +   + +   L   +A       +  +R    H   
Sbjct: 150 ------------GRAVWNAENEVYRAVYEEYHAHLRAYHAVDFDDLIVLPIRLFETHPEV 197

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I+I     +       +  +A       V+   D       W     ++ 
Sbjct: 198 IASYRERFRYILIDEFQDTSILQYHFIKLLAEEHRNLCVV--GDDDQSIYSWRGANYENF 255

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +   +                                 ++      +       +    
Sbjct: 256 ALFERDFPER--------------------------KEVKLEQNYRSVQTILEAANQLIS 289

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADR 396
            NT+  E ++ + +   + + L    +EREE+  IA  +R  +        +  ++    
Sbjct: 290 HNTNRKEKRLWSGRPGKTAIYLTFPSDEREESEYIAETIRTVVLKERIPYHEIGVLVRTN 349

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
           +L   ++    R  I   +S G           + + L  I   +D +++  ++  P   
Sbjct: 350 SLMTPIEDAFLRHNIPYKLSGGTSFFERKEIKDIIAYLRVILNPDDDVSLLRIINTPRRG 409

Query: 457 FGFPEKYLS-RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
            G    ++        EL       +      L   V        +       +      
Sbjct: 410 IGRQTLHMLGEYATEHELSIYSALTSLLYAQGLPPQVARTFDEFVSLIEEFGERISRRTS 469

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             E    LVD I      +  ++ N+                +   +N            
Sbjct: 470 IAETVRDLVDRIDYFEYLMQEHRDNEKVARYRYQNLMLFADLIERWEN------------ 517

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                                    N      +    +  +    + +    + ++    
Sbjct: 518 --------------------DPDNLNPNLGAYLTRISLITKDELDEEDTKGKVNLMTIHA 557

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + L G+ +G+ P   A     + + +                  +      R
Sbjct: 558 AKGLEFAHVFLAGVEDGIIPHARALEESEANMEEER-------------RLFYVAITRAR 604

Query: 696 HLIYTRSLR-----ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
             +Y  S R       +     S +L+ L                +   D   ++
Sbjct: 605 EALYLTSCRQRRVMREDQEQTPSPFLEELPDHLIETKAPPSDLTEEDVEDIFARM 659


>gi|257138170|ref|ZP_05586432.1| superfamily I DNA/RNA helicase [Burkholderia thailandensis E264]
          Length = 520

 Score = 91.1 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/407 (12%), Positives = 127/407 (31%), Gaps = 50/407 (12%)

Query: 626  STLFILGTLESRLLNFDTLILGGL--NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
              + I+   +++ L +  + +  L  N         +N +     ++  N          
Sbjct: 153  DAVRIMTVHQAKGLQWPVVFIPQLVKNRFPAKGGGGRNAWHLLPSEAFSNAARYRGGADD 212

Query: 684  AAHDFEMANGTRHLIY--TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                F +A          T +  E N     +                         L  
Sbjct: 213  ERRLFYVAVTRAQKYLHMTWAPHEGNRTAQVASDFY------------------NEVLAS 254

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                         ++  P P       T SFS++K     PY    R +   +       
Sbjct: 255  KYVKRRVQNYATRQQLTPAPKASVANVTLSFSDVKYFFECPYQFKLRILYGFNAPLD--- 311

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
              +    G   H+ + E+  + +   T +     +++I+ H       P +    +    
Sbjct: 312  --EALGYGKSLHDALAEVHARALRGETIDSREA-EELIERHLRAPYAYPDLKDKLKSAAV 368

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
            K+  +++       +++E  F     ++A+   G+ + G  D +  + +  V I D K+ 
Sbjct: 369  KVVAAYIRKNAAEFNNLE--FSEKAIEIALGD-GVSVAGRIDLVRRMDTDEVTIVDLKSN 425

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
                +  A+ + + QL + A       + ++  R      Y+ + +              
Sbjct: 426  ---DRAQAEAVTETQLHIYAL-----GYKELTGRP---ADYVEIYELDNQRQKRRSVDG- 473

Query: 982  SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
               + ++   ++++   T L+  + P     +  +K+    +Y +L 
Sbjct: 474  ---DFTDDVRRDVLAAATALRRNQLP----PKPGKKACGACDYCNLC 513


>gi|146329276|ref|YP_001209300.1| DNA helicase UvrD [Dichelobacter nodosus VCS1703A]
 gi|146232746|gb|ABQ13724.1| DNA helicase UvrD [Dichelobacter nodosus VCS1703A]
          Length = 664

 Score = 91.1 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 87/719 (12%), Positives = 184/719 (25%), Gaps = 122/719 (16%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
              +V     T +A +E+ +       K++  L  I +   +                  
Sbjct: 48  DAPNVCAVTFTNKAAREMLARSRARLKKRAHGL-TIATFHRLG----------------- 89

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                 L+ L R       +    I D +    L   +   +     + +   I   +  
Sbjct: 90  ------LMMLERDFAKANRRRGFSIFDQHDSLTLLRELCHNDDDAFLRRMQQHISAFKNA 143

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RA 217
               E+  +L  +         A         + ERL   NA       +         A
Sbjct: 144 NVLPEETASLMIDD------ETAAQAAKIYCAYCERLQAYNAVDFDDLLLLPTRLLKTDA 197

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     + +     +      LM  +     G  +    D       W     K
Sbjct: 198 AVRGFWQEKIRYLFVDEYQDTNNCQYALMQLIVGA--GGALTAVGDDDQSIYAWRGAQVK 255

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +PQ  + KL                             K     +T 
Sbjct: 256 NLQYL-----QEDYPQLHIIKL---------------------EQNYRCHHKILQAANTL 289

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSALITA 394
              N  ++E ++ +  +    V +  A N+  EA  IA A+           +  A++  
Sbjct: 290 IAHNPHLVEKRLWSQLERGDGVCVFAARNDEAEAERIASAIYQQKLRTQAAWQNFAVLYR 349

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               AR ++  L    I   IS G           L + L  I    D  A   +   P 
Sbjct: 350 SNFQARAIEQALRDVSIPYQISGGTSFYEHSEIRDLLAYLRLINNPEDDAAFLRICNVPK 409

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
            + G     +               +          L L  + + +    V  +   + E
Sbjct: 410 REIGTKTLTVL--------GEYAAKRQCCLFYAATELGLATLLSARAAMSVQQFCQWIEE 461

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           + KE    L   +LQ +   V Y+    +                 +  +   E  +   
Sbjct: 462 KQKEAETALPSALLQTVIDEVAYREYIEANEAPAKAEKRWARVEELIAWLVRLEEEE--- 518

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                                            ++  ++  + ++ + ++   + ++   
Sbjct: 519 --------------------------RYQSLAGLMRHVLLLDILEHQDKQKDGVQLMTLH 552

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + + G+ E               ++      ++ E    +    +      
Sbjct: 553 AAKGLEFPYVYIAGVEE--------------DLLPHHHCGESEEAIAEERRLLYVGMTRA 598

Query: 695 R-HLIYTRSLRENNIPTI----ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
           +  L  + + +  +        ASR+LQ L   G            Q   +   ++  T
Sbjct: 599 KFQLTLSYAKQRRHGKNWEASTASRFLQELPEEGIDWQDGRRAIDEQALNEKREEMFST 657


>gi|148656349|ref|YP_001276554.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
 gi|148568459|gb|ABQ90604.1| ATP-dependent DNA helicase, Rep family [Roseiflexus sp. RS-1]
          Length = 659

 Score = 91.1 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 73/696 (10%), Positives = 173/696 (24%), Gaps = 112/696 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +++     T +A +E+R    ++ G     L    +   V        +           
Sbjct: 57  SNILALTFTNKAAREMRQRLRDMPGVSIRGL-TAGTFHSVCASVLREHIAGRIGSYTADF 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            I    E   L     +   +    L                   + L   I   ++   
Sbjct: 116 TIYAEDEQVHLASAALDAARERPPALLEP----------------EELLRHISRAKSRLL 159

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                     +           F+    + +   L   NA       +   R  +EH   
Sbjct: 160 TPRLAARFARDDLA-------RFVAGCYQRYQRSLERANALDFDDLILLTHRLFSEHPDV 212

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANH----PNGAIVLPGLDCHIPTAIWNTIT 275
               +     ++I     + PA   L+  +            +    D       +    
Sbjct: 213 LDACQSRWRHVLIDEYQDTDPAQHALVELLTRPSPANGGVRSLFAVGDGMQAIYGFRNAD 272

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
               +    +              +  L       + + + +                  
Sbjct: 273 HTIISRFERDFPD---------ARVIELATNYRSRQPILDAAYA----------VIRHSR 313

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--SALIT 393
           T         + + P      S + +++A + R+EA  +A ++   L + ++    A++ 
Sbjct: 314 TVQPMALRATKPETPRGVGYTSPLQIVDAKDARDEAERVARSIADLLRQGRRPQEIAVLY 373

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
             R+++R  +  L    I   +                + L  I    D +++  +   P
Sbjct: 374 RSRHMSRAFESALRHARIPYALRGATGFFDRAVVRDALAYLRVINNPADTLSLNRIANVP 433

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                       +  ++ L +    R  T  +    P   + L 
Sbjct: 434 -----------------------PRGLGANSLVTLSAFAGQRGLTLADALIHPEALALLP 470

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            +  E A  L   + +      +  +  +     L  + +       L+           
Sbjct: 471 SKAAEGARQLAALLTRWRRLAESALSPDHLLADVLERTGYQAWLEQRLEP---------- 520

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                E      +   ++    +   A        +  +    +     E+   + +   
Sbjct: 521 -----ENVPDARAHLQELANAAADHTA----LNAFLQEVALLTSADDNDEERDRVQLSTI 571

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L +  + + GL EGV P               + +L T E    +    +     
Sbjct: 572 HAAKGLEWPIVFVVGLEEGVLP--------------HEHSLVTPEGVDEERRLCYVALTR 617

Query: 694 T-RHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDF 727
               L  + +  R        SR+L  +   G    
Sbjct: 618 AGEQLYLSWAASRVRGKLAKPSRFLNDIEAYGRERA 653


>gi|294811705|ref|ZP_06770348.1| putative RecB family exonuclease [Streptomyces clavuligerus ATCC
            27064]
 gi|294324304|gb|EFG05947.1| putative RecB family exonuclease [Streptomyces clavuligerus ATCC
            27064]
          Length = 307

 Score = 91.1 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 80/269 (29%), Gaps = 32/269 (11%)

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
            A P + S S     +  P     R I +L              RGTL H ++  L     
Sbjct: 30   APPVSLSPSRASDFMQCPLLYRFRVIDRLPER-----PSAAATRGTLVHAVLERLFDAPA 84

Query: 825  NKNTPEINHLMKQIIDSHFEKENLP----------PHIDIIWRHLFHKISHSFLEHEEKI 874
             + T      +          +                   W      +   +   E+  
Sbjct: 85   AERTAGRARSLVPGQWDRLLADRPELGGLFEGDTGGERLAGWLAEAEALVERWFSLEDPT 144

Query: 875  QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
            +  +E     +  ++ ++S G+ L G  DR+D+  +G V I DYKTG  P+     +   
Sbjct: 145  R--LEPAEREMFVEVGLDS-GLRLRGVIDRVDVAPTGEVRIVDYKTGKAPRP-EYSEGAL 200

Query: 935  PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
             Q+   A  +       +       L  + L     +                E+  + L
Sbjct: 201  FQMHFYALVIWR-----LKKVVPRRLQLVYLGSGDVLTYDPVPAD-------LERVERKL 248

Query: 995  IEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
            + +   ++   +      R ++      +
Sbjct: 249  LALWDAIRRATETGDWRPRPTK-LCGWCD 276


>gi|163784552|ref|ZP_02179407.1| hypothetical protein HG1285_10542 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880180|gb|EDP73829.1| hypothetical protein HG1285_10542 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 327

 Score = 91.1 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 88/270 (32%), Gaps = 31/270 (11%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHNIITELIKKRINK 826
               S ++       PY  Y   I+ ++ I    +      ++GTL HN++ +L KK   +
Sbjct: 71   FPVSATDFSTYAYCPYKFYLDHIIGIEEIEEPDRTVISPAEKGTLIHNLLEKLYKKYPFE 130

Query: 827  NTPEINHLMKQIIDSHFEKE--NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            N  E    +K+  +   +++   + P       +   K+    ++         +   + 
Sbjct: 131  NLEEEIEELKKGFEKEIKEKLKMILPSFRPFEENKALKLLERTIKF-----IYFDIERLE 185

Query: 885  IP-AKMAIESIGIH---LTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLS 938
                K  I          +G  DR D        I DYKTG +P+   +  +     QL 
Sbjct: 186  KENKKTEILERSYKNRYFSGKIDRADKDCQNNFYIYDYKTGKSPENLEKEIKNKYI-QLV 244

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
            +         F + + + +  L  I L  +      + + +         +    L  ++
Sbjct: 245  IY------KEFLENEGKNIRELGIIALNDETGKFVYSLEDETQ-----INQLTTYLKNLL 293

Query: 999  TLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
              L+  E+ F     L         Y    
Sbjct: 294  KQLK--EKYFYP---LKNDLCDYCSYKDFC 318


>gi|327489960|gb|EGF21749.1| exonuclease RexA [Streptococcus sanguinis SK1058]
          Length = 1224

 Score = 91.1 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 100/958 (10%), Positives = 235/958 (24%), Gaps = 123/958 (12%)

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            +L  +      + +  +  +   +  + +L               ++ K++  +   +  
Sbjct: 276  ALTALAGLNELSPIEETAQVLKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRK 335

Query: 140  ISPANAIWLAKNLA--DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                      + L   D I+  + E     +L                DF+   ++ + E
Sbjct: 336  PMIERLRSFDQQLYQMDFIEQHQDECLPLVEL--------------LRDFVADFAQAYLE 381

Query: 198  RLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            R    NA          +          H  +     +++     +     R++  ++  
Sbjct: 382  RKKVENAFEFGDISHFAIEILETFPEVRHFYQERYHEVMVDEYQDTNHTQERMLDLLSR- 440

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDI 305
              G       D       +     +  +            Q             L+ L+ 
Sbjct: 441  --GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKLIVLKENFRSHLEVLEA 497

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA- 364
              +  KRL +        +         P   +    +     I    K   +    E  
Sbjct: 498  TNDVFKRLMDEEVGEIDYNETHYLVAGNPSKREPNPANRASFLIYEGSKESPEEEADEGL 557

Query: 365  --DNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGI 419
                   E   +   +    +E     K   L+TA R     +     ++ I +    G 
Sbjct: 558  PQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLILAAFEQYQIPLVPDDGA 617

Query: 420  P-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL---VA 475
                 ++   ++   L  I    +  A+  L+K P+  FG  E      + + E      
Sbjct: 618  ANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQERSQENL 677

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI---LQCIT 532
                 N+     L   ++ +   +K        Q   +         L+  I        
Sbjct: 678  YEKLLNALQGRGLHPALITQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQDRFYYD 737

Query: 533  PLVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             + T            ++S    +   +  + +          L  + +    S   +  
Sbjct: 738  MVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIRMIDRILENQHDL--ASVPVAAP 795

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL--LNFDTLILGGL 649
             +    +  +  + ++     +         + SS+  IL   +        D  +    
Sbjct: 796  KDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVSVEE 855

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA--------NGTRHLI--- 698
            +        + +    +    +L L +  + +         A         G++ ++   
Sbjct: 856  SYAPNQLRISMDTLPYQQNLVELQLASLSEQMRLLYVAMTRAETKLYLIGKGSQEVLDKR 915

Query: 699  ---------YTRSLRENNIPTIASRW-----------LQRLLVLGGTDFFDNLKKR-GQC 737
                      + SLR          +                 +   +       R  + 
Sbjct: 916  QWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDKNLAYETRFVTDEELTAEEIGRINEP 975

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAV--YARRILKLD 794
             L     L    +     R         +  +   S I+   +  P  +  +   I+  D
Sbjct: 976  VLFPADDLADNRQSDDILRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIMDTD 1035

Query: 795  FIPHFKKDPDRT-------------------DRGTLFHNIITELIKKRINKNTPEINHLM 835
             +    +                          G+  H ++  +            + L 
Sbjct: 1036 GLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSSPSMAVLRSALA 1095

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM----AI 891
            +   D   +K+   P I   +     ++             + +++    P  M      
Sbjct: 1096 QVQADEAVKKQIQLPKIASFFETDLGRLL----------IENSDRVRREAPFAMLKRDDS 1145

Query: 892  ESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
                  L G  D   +       + + DYKT               QL L A AL   
Sbjct: 1146 SGQNFVLRGILDGYLLFED---RIILFDYKTDKYKDSSELLARYHGQLDLYAQALSRS 1200


>gi|302380761|ref|ZP_07269226.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311704|gb|EFK93720.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
          Length = 892

 Score = 91.1 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/472 (13%), Positives = 140/472 (29%), Gaps = 69/472 (14%)

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            +  LI    V         + I    + RL N+D L +  +N+ V P     + F +   
Sbjct: 448  LIDLIKNLKVDSTDYLVDGIRIYSLTDIRLSNYDVLYVVNMNDDVIPGKMNYDFFNNEDN 507

Query: 669  QSDLN-------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA--------- 712
               L             +          ++   R +  + +   N    +          
Sbjct: 508  IVFLQKNGIDILSDADNRRRNIDRFIDAVSRADRKIYLSYNTESNVKSRLILDKNIKQNQ 567

Query: 713  ------SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                  S+ ++++            K   + +L+       +     ++           
Sbjct: 568  KIAKINSQNIKKVDTKKLHSISVYEKYSLKQHLNRIESRISSKDISDFE-VDDKTTQYIL 626

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI------ 820
             +  S ++++     P   Y R  LKL      +      D GT+ HN + E        
Sbjct: 627  KKELSSTKLETYFECPMKFYFRYYLKLRPQIKSRL----LDIGTILHNTLEEFYGINISQ 682

Query: 821  -KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKI--- 874
             K  I+         +  ++ + FEK  L   I         +      F+  +      
Sbjct: 683  IKDAIDGKCELDISSLDGLLKNSFEKFGLNTDIKENEFDYEKYLNKLKDFVRTDIYNMKN 742

Query: 875  -QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQK 931
             +       +     ++++      TG  DR+D   SG + + DYK   N   K +   K
Sbjct: 743  EREKFYPFKLEEDFIISLDEST-KFTGRIDRVDKTDSGKIRLIDYKLSKNSFRKAKDLDK 801

Query: 932  LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE--- 988
                Q ++ +               V +  Y  +K   + + + N  K    + + +   
Sbjct: 802  NKGFQFAIYS-----------SYGDVVSCKYKSIKDNDEYEFLQNISKAQLDEIMIQKVN 850

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA--EWREEYD 1038
            +  +N+      ++  +          + S    +Y+ + ++   E     D
Sbjct: 851  EFRENIRNKRLFIKASD----------DNSCKYCDYNKICKLKNTEKEARDD 892


>gi|92117526|ref|YP_577255.1| hypothetical protein Nham_1996 [Nitrobacter hamburgensis X14]
 gi|91800420|gb|ABE62795.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 884

 Score = 91.1 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 90/764 (11%), Positives = 187/764 (24%), Gaps = 67/764 (8%)

Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
           I      M  +     G ++ P     +       ++                P+   A 
Sbjct: 29  IGVQVLTMGQLVARIAGGLLRPVDPDILLETARAALSAVDMAELEPIKDLPGMPRAVAAT 88

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
           L     + R +V+   +V   +   + +  +       S  R ++++E     ++   S 
Sbjct: 89  LDK---VWRANVRLSESVHPRLTTLARLEEEIVGRLPASMRRPSELVELASLRLELAKSV 145

Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
           +  +E     E +      +    +    K                 +         S G
Sbjct: 146 IGPVEIHGHSEMSPCWRPFVSRLAEVVPVKWLAGARHVPSWLTGTKVVVEATQATGTSIG 205

Query: 419 IPL---STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
           +                + + +        IA +   P           S +   +  V 
Sbjct: 206 VHSCANQQHEVIEAFRWIRSLLAGGTPASDIAIVASSPGDYDDHVLAQASDSALPIHFVH 265

Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                   D   + +L    +          +                   +L    PL 
Sbjct: 266 GMKAVTVADGQAVAALAEILLKGISQERVKRYLSLVRGAPALHDLFRGWIRLLPSDAPLT 325

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           T    + +       SDW        + + +    +       + G+TL +   + I   
Sbjct: 326 TLARWEGAFKRVEP-SDWPDGQNRSAELMDVLRLLEGGVDEATDIGETLLAGTQRSIWRR 384

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
           + +   A      + RL   + V    E +S +     +         + L GLN G WP
Sbjct: 385 ALMDGPAAALPVTLARLRVDDGV----EPASNVIWTSAIALASSPRPNVWLLGLNAGSWP 440

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
           +  +++  +   +     L       G       +     +++ + S R+     +    
Sbjct: 441 RRISEDRLIPDHVLPIEELDPLPVADGDKRDFDTIVASASNVVASFSRRDVGGRMLGRSP 500

Query: 716 L------QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK----------- 758
           L        L      D   +   R          +          R             
Sbjct: 501 LISTTADVHLDRARTPDHAFSEADRLLARPHEFASMPVAVSGLGCWRDWYRNDITPHDGL 560

Query: 759 ----PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP--DRTDRGTLF 812
                    +   R  S + +K L+ DP     R  L        ++         G L 
Sbjct: 561 IAAGHERLQKLFERPLSATSLKLLLRDPMRFVWRYALGWKAPEDAEEPLSFSALHFGNLV 620

Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI--------IWRHLFHKIS 864
           H  +   + +             +                +         IWR    +  
Sbjct: 621 HASLRGAVDQLEIAGGLASADQAQLTAAIDAALATASSDWESELPIPPAVIWRDATERAR 680

Query: 865 HSFLEHEEKIQS--SIEKIFVNIPAK-------------------MAIESIGIHLTGFAD 903
              +            ++ +  IP                     + I    + + G  D
Sbjct: 681 AVSVAALSYSLPMLPGQRTWTEIPFGKSDAEGDDGRDLPWKSDALVEIPGTKLRIEGLID 740

Query: 904 RIDLLKSGF-VDITDYKTGDNP---KKETAQKLIDPQLSLEAAA 943
           R+DL +      + DYKTG       +   +   + Q  L A A
Sbjct: 741 RLDLSEDRSKARVIDYKTGKMSKKMSETVIKGGSELQRCLYAFA 784


>gi|254439061|ref|ZP_05052555.1| double-strand break repair helicase AddA [Octadecabacter antarcticus
            307]
 gi|198254507|gb|EDY78821.1| double-strand break repair helicase AddA [Octadecabacter antarcticus
            307]
          Length = 1128

 Score = 91.1 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 75/854 (8%), Positives = 195/854 (22%), Gaps = 88/854 (10%)

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
             LI    + +  +                   I  A      +   ET++ +     AL 
Sbjct: 305  DLIDELNDLMQRVEDGRDARWCWLALEKTRALIAFAT---PFVQRYETKKVQS---AALD 358

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
             +          +    A   W    ++      +           +            +
Sbjct: 359  FDDLISKAKALLE--DPAVAQWVLFRLDGGVDHVLV--DEAQDTAPDQWDIVRLLTQEFS 414

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
               G+ P   R +  V +         G D      +    + +   +            
Sbjct: 415  TGIGANPDRERTVFVVGDKKQSIYSFQGADPDGFDRMSVHFSSELAKVEKPLHRLELLYS 474

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            +  +  +  L  +    +    + + +  R+              +  ++  E +  +  
Sbjct: 475  FRSSAAVLQLVDQTFKGEMAEGLGDHIEHRAFKDGMPGRVDVWPVIEPSEKPEERDWDDP 534

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDE---------------NKKKSALITADRNL 398
                     +     + A  I   +                           L+    +L
Sbjct: 535  VDLKGRTNHKVVLAAQIAAEIKRMIGQETLPVKEVDDTEWSRRKITPGDFLILVQRRSDL 594

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
               +       G++I  +  + L   L    +++LL  +   +D +++A  +K PL  + 
Sbjct: 595  FSEIIAACKTAGLDIAGADRLKLGGELAVKDISALLQFLALQDDDLSLAAALKSPLFGWT 654

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
              + Y                +      +    +L  +  + +        +RL      
Sbjct: 655  EKQLYDLAQPRKKRQTLWEALRT-SGTHEDTLAILHDLRNRADFLRPYDLINRLLIRHGG 713

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
               L+     +    +    +                                    W +
Sbjct: 714  RQNLIARLGHEAEDGIDALLSQALGYEQ------------------SSVPSLTGFLTWLQ 755

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
             E   +        +    +  +  + ++    ++   T + +  +   L + G      
Sbjct: 756  TEDVVVKRQMDSAGDRIRVMTVHGAKGLEAPIVILPDTTKRKREVRGDLLTLGG------ 809

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
                       +         ++  L    +    L             +       + +
Sbjct: 810  ---HVYWKPKSDVMPQVMRDIQDDMLDAQDRERRRLL------------YVALTRAENWL 854

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
               +  +       S        L   D  D+    G          D        +   
Sbjct: 855  IVAAAGDVGKGDNDSWHRTVSSALDHLDAVDHPTAFGTIKRFSRWTWDAGPMVETTEATA 914

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD---RTDRGTLFHNI 815
                + A  +T        L   P   +   +     +               G++ H +
Sbjct: 915  SKAVMPAFGKTLP-----DLPVLPGIRFPSELGGAKTMEGETHTDTSDLALAWGSIIHFL 969

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
            +  L +                     F   +    +      L  +   +    +    
Sbjct: 970  LEILPEMDPTTRPGAAIG---------FTNNHPEAGLIPNIDDLIKEALATLDAPDLSWI 1020

Query: 876  SSIEKIFVNIPAKMAIESIGI-HLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKL 932
                     IP    + S+G   + G  DR+ +  +  + + D+K+        E     
Sbjct: 1021 --FASGLAEIPISATLPSLGNDRMHGIIDRLIVTDTDVIAV-DFKSNRVAPKTPEQTPDG 1077

Query: 933  IDPQLSLEAAALKA 946
            +  Q++    ALK 
Sbjct: 1078 LARQMAAYRDALKQ 1091


>gi|323126210|gb|ADX30675.1| gp72 [Mycobacterium phage Wonder]
          Length = 271

 Score = 91.1 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 84/280 (30%), Gaps = 54/280 (19%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S S++KQ    PY+    R+ K+   P          +G+  H ++ E  ++R     P 
Sbjct: 9    SVSQLKQYERCPYSYKLARVDKVWQRPAAWLP-----QGSAVHTVLEE-YRRRELDGDPM 62

Query: 831  INHLMKQIIDSHFEKE--------------------NLPPHIDIIWRHLFHKISHSFLEH 870
                 +++    + KE                    +    ++  W     +I   F   
Sbjct: 63   SLEEAQEMFKEEYAKEVSQYTDVTPNFDWWFRSGRYDGASDLERRWHIGLEQI-EKFFAW 121

Query: 871  EEKI-------QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
             E                 + +   + ++  G+ + G+ D +     G V + DYKTG+ 
Sbjct: 122  TEGHPEEVIWIAPDGTP-GIELGFDIDLD--GVLVRGYIDAVLRDSDGNVIVRDYKTGNT 178

Query: 924  PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
            P         D QL + + AL       I+  ++ +  Y    +K      T        
Sbjct: 179  P-------GDDFQLGVYSVALAET--YGIEPPQIGD--YYMAGKKGVKGKPTYPYDLGEW 227

Query: 984  DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
                E+  +   E+   +                     +
Sbjct: 228  P--RERVAEKFRELEENIAAERF----DPDPEPDKCAFCD 261


>gi|160877119|ref|YP_001556435.1| DNA-dependent helicase II [Shewanella baltica OS195]
 gi|160862641|gb|ABX51175.1| DNA helicase II [Shewanella baltica OS195]
 gi|315269321|gb|ADT96174.1| DNA helicase II [Shewanella baltica OS678]
          Length = 722

 Score = 91.1 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 74/690 (10%), Positives = 172/690 (24%), Gaps = 123/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+     T +A  E+R    ++ G     +  I +   +           +  L      
Sbjct: 56  SILAVTFTNKAAAEMRERVEKVAGTNMGRM-WIGTFHGLAHRLLRTHFQDA-GLPQSFQI 113

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +    ++ RLI      L    K   P           +                 +  +
Sbjct: 114 LDSDDQV-RLIKRILKSLNLDEKQYPPRQAQGYINGKKD-----------------QGLR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            + +           + L  + LKI  + + E                L+RA    L K 
Sbjct: 156 PKHI-------DAGGFPLEQNLLKI-YQVYQESCDRAGLVDFAEI---LLRAHELWLNKP 204

Query: 226 --------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                       I++     +       +  +A     A V+   D       W     +
Sbjct: 205 HLLAHYQDRFKHILVDEFQDTNAIQYAWIRVLAG--QTANVMIVGDDDQSIYGWRGAQVE 262

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           + +    +                               +  +              +  
Sbjct: 263 NLHRFLKDFP--------------------------SATTIRLEQNYRSKGNILKASNAL 296

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITAD 395
              N + +  ++   +     ++L  A NE +EA  I   +    ++       A++   
Sbjct: 297 IANNPERMGKELWTDEADGDPISLYCAFNEMDEARFIVGRINDWHEKGGNLSDCAILYRS 356

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L   G+   I  G+              L  I   +D  A   +V  P  
Sbjct: 357 NAQSRVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKDDDAAFERVVNTPPR 416

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G     + R+      +             L    +  +  +                
Sbjct: 417 GIGDRTLDILRSTARQHELT------------LWQASMRLLDEKV--------------- 449

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
              LA    + +   +  ++T + +              + +            +    +
Sbjct: 450 ---LAGRAANSVRGFMDLIMTMREDTQDMVLYRMADTVIQASGLKAMYEAEKGEKAHARI 506

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              EE  T +  F    E     + N       ++              +  + ++    
Sbjct: 507 ENLEELVTAARTFEMPEELEDMGELNG-----FLSHAALEAGEGQADAFTDAVQLMTLHS 561

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + + G+ EG++P              S + L+  ++   +    +       
Sbjct: 562 AKGLEFTMVFMAGVEEGIFP--------------SKMALEEGDRLDEERRLCYVGMTRAM 607

Query: 696 H-LIYTRSLRE----NNIPTIASRWLQRLL 720
             L  T +              SR+++ + 
Sbjct: 608 EKLYITYAESRRIYGREDYARPSRFIKEIP 637


>gi|254293049|ref|YP_003059072.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
 gi|254041580|gb|ACT58375.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
          Length = 1134

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 87/921 (9%), Positives = 221/921 (23%), Gaps = 147/921 (15%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +   + ++ A ++  L E              + +   + +A  E+           +
Sbjct: 218  PGTGKTQTLV-ARVDALLEEGVDPR--------RILLLTFSNKAAGEMADRIARKHSSAA 268

Query: 73   TILPIIKSLGDVVEE-KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            T +  I +      +        L    +P + +    +EL                + +
Sbjct: 269  TAM-WIGTFHAFGLDIVRRFHGELGLPTDPRMMDRIEAVELLE--------------EEF 313

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-------KYGMWWLLA 184
            P   L+   +  +   +  ++   I   + E         L  E       +        
Sbjct: 314  PRLDLAHYRNLYDPTQIISDILQAISRAKDEVVDPARYADLAKEMAASATTEDQRVAAAK 373

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239
            A  +    + +      ++           +R            +     I++       
Sbjct: 374  ALEVARVYELYERLKANVHCVDFGDLVSMPVRLLESRPDICEHLRSQYDHILVDEYQDVN 433

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
             ++ RL++ +   P+G  +    D       +   +  +      +  +    +  L K 
Sbjct: 434  RSSVRLLTAL--CPDGRNLWAVGDAKQSIYRFRGASSFNMARFGVSD-FPGGERGRLKKN 490

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
                                   RS+           + M   D                
Sbjct: 491  Y----------------------RSVEEIVDTFSDFAAAMIVGDTESGLEAVRGSSGDRS 528

Query: 360  ALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISA 417
             L +     ++ ++IA A++    +    ++  ++         +   L R G+ +    
Sbjct: 529  TLRKVAQAPDQIVAIAEAIQERHRDGCAFREQVVLCTGNEKLSEIGQSLERLGVPVLFLG 588

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
               L        L SLL  +        +                 + R           
Sbjct: 589  --SLFERPEIKDLMSLLTILSDKRAMGMVRVACIGDFEMPIDDVGKIYRHLR-------- 638

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                                             +   E+ +L   L +     +  L   
Sbjct: 639  ---------------------------SSDGNPKSWLENTDLTATLSECGQMSLANLKAA 671

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                + T    +        +   +            +    +G  +    + +    + 
Sbjct: 672  FDGFDDTSEPWA----VIAHLLLDRTSIAARLSISEMMAHRTQGIAIWQFLNFLRSQPTG 727

Query: 598  IKANAIEWIDIITRLIDG------ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                    +D + RL+          +    +    + ++    ++ L F+T+ L GLN 
Sbjct: 728  QGLPIKRLLDRVRRLVRLGDDRNLRQLPLAAQGIDAVRLMTIHGAKGLEFETVHLPGLNA 787

Query: 652  GVWPK------NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS--L 703
               P+          +  +    ++ L      +   Q    F   +  R  +   +   
Sbjct: 788  DTIPRNPPLPTCPPPDGMVEGTTETALEAFRTAQAEEQECLFFVAMSRARDRLLIYAPTQ 847

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
            + N      S ++ RL                         +    + P           
Sbjct: 848  KSNGSKRNLSSFIDRLGSRIDH-----------------ETIQPGGELPAAPEMADVMLQ 890

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK- 822
             +    +S +++      P   +   +L++                   H  +  ++K  
Sbjct: 891  VSGRVRFSGAQLSLYERCPRRFFYTHVLQVGGRRTATPFMQ-------MHEAVRAVVKDV 943

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
               K T      ++  +   F    L  +  I     +     SF        +      
Sbjct: 944  VAGKTTVSSEAELRSQVAREFSIHELSDNGYIREYTEYAVAMISFFLSARDGHTPEAPTA 1003

Query: 883  VNIPA---KMAIESIGIHLTG 900
            V +     ++ IE   + L  
Sbjct: 1004 VRVRLGDEELTIEPDDVLLRA 1024


>gi|331088205|ref|ZP_08337124.1| recombination helicase AddA [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330408449|gb|EGG87915.1| recombination helicase AddA [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1197

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 86/845 (10%), Positives = 213/845 (25%), Gaps = 155/845 (18%)

Query: 213  ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG-AIVLPGLDCHIPTAIW 271
             L+ +            I+I     S      ++++V+    G   +    D       +
Sbjct: 375  ELVPSAVAGEYAKQFEEIMIDEYQDSNFVQETILTSVSGQAEGKNNIFMVGDVKQSIYSF 434

Query: 272  NTITEKSTNITSSNTTYSTHPQYS--LAKLLDFLD-------------IKREDVKRLGNV 316
                 +      +  +     +    L K                   +K+E      + 
Sbjct: 435  RLSRPELFMQKYNTYSLEDSDRQRIDLHKNFRSRGEVLDSVNYIFRRIMKKEMGGIEYDD 494

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
            S  +Y  +       +          +   +          D      +  R EA  IA 
Sbjct: 495  SAALYLGAKFPKTEEIEAKRYISSECERNTDLFKTELLILKDRDKEAENVRRSEARMIAR 554

Query: 377  ALRMSLD--------------ENKKKSALITADRNLARRVKLE-LTRFGINIDISAGIPL 421
             ++  +                  K   ++T             L   GI     +    
Sbjct: 555  RIKSLMRGGVVSDKKTGEYRPVQYKDIVILTRSVKGWAEDFSAVLAEEGIPAYSVSREGY 614

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              T   S+L   L  +      + +A ++  PL      +    R               
Sbjct: 615  FETYEVSVLLDYLKILDNGRQDLPLAAVLASPLGNLLTEDMAKIRVA------------- 661

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                               +       +   SEE ++    L D +++  + +  ++   
Sbjct: 662  -----------------YPDVPFHESARMYASEEAQDPV--LKDRLMRFFSQVDHFRKKV 702

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
            + T  +  +++  + T        +        +      + L         T      +
Sbjct: 703  SYTPIHDLLTEIIEETG-----FGIYISAMEGGVQRAANVEMLVEKAKAFEGTSYKGLFH 757

Query: 602  AIEWIDIITR-LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
             + +I+ + +  +D        E++ T+ I+   +S+ L F  +   G+ +    ++T  
Sbjct: 758  FVRYIEQLKKYDVDYGEAGIMDEQADTVRIMSIHKSKGLEFPVVFAAGMGKQFNTQDTKS 817

Query: 661  NPFLSR---------VMQSDLNLKT-----------AEKYIGQAAHDFEMANGT------ 694
            +  L            ++      T            E +  +    +            
Sbjct: 818  SMILHPEWGIGIDKIDLKRRTKAPTFLKKLIREEAMYEMWAEEMRILYVALTRAKEKLIM 877

Query: 695  ----RHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT-----RK 744
                      RS ++        S +   +  L   +    L+    C   +T       
Sbjct: 878  TGVLPDRFIMRSGKDGVITAGAKSYFDWIIPALWSEEEEAALEDAPVCIFQYTGNDIGAD 937

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA---------------RR 789
            +     +           +           + +  +  Y  Y+               R+
Sbjct: 938  ILQVKSEQLALDVLKHWDVTKVYDPEIRKCLDEQADYVYPYYSEGGMKMKFTVSELKKRK 997

Query: 790  ILKLDFIPH----------------FKKDPDRTDRGTLFHNIIT--ELIKKRINKNTPEI 831
             L+ +                     ++      RG+ +H  +   +  K+       ++
Sbjct: 998  ALQEEAGEEMYKEPQTVPLLPRFIKEEETLSGASRGSAYHKFLELLDFAKEYEA---DDL 1054

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
               ++++ +       +   I+      F +        +        K++   P  +++
Sbjct: 1055 EAEVERLAEDGRLSREMAECIETEDMMRFLRTKSGVRMLQAARN---RKLYKEQPFVISV 1111

Query: 892  E----------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
                          I + G  D     + G + + DYKT     ++   +    QL   A
Sbjct: 1112 NASEIYQGDLSGEKILVQGIIDVYFEEEDG-LVVLDYKTDQVKSRKELAEKYHAQLEYYA 1170

Query: 942  AALKA 946
             AL  
Sbjct: 1171 HALSQ 1175


>gi|325696015|gb|EGD37906.1| exonuclease RexA [Streptococcus sanguinis SK160]
          Length = 1224

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 86/854 (10%), Positives = 208/854 (24%), Gaps = 107/854 (12%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGST 236
             L  DF+   ++ + ER    NA          +             +     +++    
Sbjct: 366  ELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILETFPEVRRFYQERYHEVMVDEYQ 425

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS- 295
             +     R++  ++   N  +V    D       +     +  +            Q   
Sbjct: 426  DTNHTQERMLDLLSRGKNRFMV---GDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKL 481

Query: 296  ------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN-- 347
                      L+ L+   +  KRL +        +         P   +    +      
Sbjct: 482  IVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPTKREPNPANRASFLI 541

Query: 348  -KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK 403
             +             +       E   +   +    +E     K   L+TA R     + 
Sbjct: 542  YEGSKESPEEEGDEGLPQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLIL 601

Query: 404  LELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                +  I +    G      ++   ++   L  I    +  A+  L+K P+  FG  E 
Sbjct: 602  AAFEQHQIPLVPDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDEL 661

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                 + + E       +   + ++ + L    +  +         ++            
Sbjct: 662  ARLSLQASQEHSQENLYEKLVNALEGRGLNPALVTQELQKKLQHFHETLQGWRTYSKTHS 721

Query: 523  LVDHILQCITP------LVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNL 575
            L D I +          + T            ++S    +   +  + +          L
Sbjct: 722  LYDLIWKIYQDRFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRIL 781

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              + +    S   +   +    +  +  + ++     +         + SS+  IL   +
Sbjct: 782  ENQHDL--ASVPVAAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTK 839

Query: 636  SRL--LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
                    D  +    +        + +    +   ++L L +  + +         A  
Sbjct: 840  GVGIKYVADVSVSVEESYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAET 899

Query: 694  TRHLI--------------------YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
              +L+                     + SLR          +  + +       ++    
Sbjct: 900  KLYLVGKGSQEALDKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFV 959

Query: 734  RGQCYLD------------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-IN 780
              +                    L    +    +R         +  +   S I+   + 
Sbjct: 960  TDEELTAEEIGQINEPLFFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVR 1019

Query: 781  DPYAV--YARRILKLDFIPHFKKDPDRT-------------------DRGTLFHNIITEL 819
             P  +  +   I+  D +    +                          G+  H ++  +
Sbjct: 1020 TPSQIKKFYEPIMDTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRI 1079

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                        + L +   D   +K+   P I   +     ++             + +
Sbjct: 1080 PLDGRPSMAVLRSALAQVQADEAVKKQIQLPKIASFFETDLGRLL----------IENSD 1129

Query: 880  KIFVNIPAKM----AIESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
            ++    P  M            L G  D   +       + + DYKT             
Sbjct: 1130 RVRREAPFAMLKRDDASGQNFVLRGILDGYLLFED---RIILFDYKTVKYKDSSELIARY 1186

Query: 934  DPQLSLEAAALKAG 947
              QL L A AL   
Sbjct: 1187 RGQLDLYAQALSRS 1200


>gi|118466048|ref|YP_880325.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104]
 gi|118167335|gb|ABK68232.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104]
          Length = 774

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 76/728 (10%), Positives = 195/728 (26%), Gaps = 84/728 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T +A  E+R   + + G ++  +  + +              L       + 
Sbjct: 66  GQVLAITFTNKAAAEMRERVVRLVGNRARAM-WVSTFHSTCVRILRNQASL-------IE 117

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            +     +       R  L  I +D+  +     P            LA+ I  ++ E  
Sbjct: 118 GLNSNFSIYDADDS-RRLLQMIGRDMGLDIKRYSPRL----------LANAISNLKNELI 166

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                 A   +         A       +        L+    +G  +A++RA  +    
Sbjct: 167 DPAAAVANLTDDSDELSRTVASVYGEYQRRLRAA-NALDFDDLIGETVAVLRAFPQIAQH 225

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTV-----ANHPNGAIVLPGLDCHIPTAIWNTITEK 277
            +     +++     +  A   L+  +      +      +    D       +   T +
Sbjct: 226 YRRRFRHVLVDEYQDTNHAQYVLVRELVGTDTEDGVPPGELCVVGDADQSIYAFRGATIR 285

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +   +T            L+      + + + +N +  R+             
Sbjct: 286 NIEDFERDYPDATTIL---------LEQNYRSTQNILSAANSVIARN------------- 323

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITA 394
               +   + ++         +    ADNE +EA  +A    AL    +      A+   
Sbjct: 324 ----SGRRDKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAQKGEITYNDVAVFYR 379

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
             N +R  +    R GI   +  G+          + + L  +    D +++  ++  P 
Sbjct: 380 TNNSSRSFEEVFIRAGIPYKVVGGVRFYERKEIRDIIAYLRVLDNPGDAVSMRRILNTPR 439

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G   +                  +  D +   +     +   +    +  +   L +
Sbjct: 440 RGIGDRAEACVAVYAEN------TGASFADALVAAAEGKVPMLNSRAEKAIAGFVELLDD 493

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
               L   L D +   +      +  ++ST                L  +          
Sbjct: 494 LRGRLDDDLGDLVESVLERTGYRRELESSTDPQE------------LARLDNLNELVSVA 541

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-IDGETVKPKIEKSSTLFILGT 633
             F  +    ++L   +         +     + + R+ +  ++ +   + +  + ++  
Sbjct: 542 HEFSTDRANAAALDESLDAADDEDVPDTGVLAEFLERVSLVSDSDEIPEDGAGMVTLMTL 601

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + + G  +G++P   + +  +    +  L      +   +       A  
Sbjct: 602 HTAKGLEFPVVFVTGWEDGMFPHMRSLDDPVELSEERRLAYVGITR--ARQRLYLSRA-- 657

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
                  RS     +    SR+L+ +                   +    +       P 
Sbjct: 658 -----IVRSSWGQPMLNPESRFLREIPQELIEWRRTAPAPSFSAPVSGAGRFGTPRAAPT 712

Query: 754 YKRPKPFP 761
                  P
Sbjct: 713 RAAMSKRP 720


>gi|261350758|ref|ZP_05976175.1| DNA helicase II [Methanobrevibacter smithii DSM 2374]
 gi|288860513|gb|EFC92811.1| DNA helicase II [Methanobrevibacter smithii DSM 2374]
          Length = 994

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 126/956 (13%), Positives = 253/956 (26%), Gaps = 135/956 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +S+ +   T++A  EL+    E   K       I ++     +       ++  ++    
Sbjct: 48  SSLLVITFTRKAANELKDRLSEDIPKNIINEMQISTIHSFCLDFLKKRGNVTNLIDDDSG 107

Query: 105 NIQRLLELARLILIWRNKLP-DIIKDLYPESPLSLPISPANAIWLAKNLADIIDII-ETE 162
             +RL      I  ++ KL       L      S+            ++  +ID I +T 
Sbjct: 108 EKRRLF-----IQKYKYKLGFKNEFYLADYQIPSVINKFDEYTTFKVDIDGLIDYIKQTR 162

Query: 163 EKKWEDLHAL------------KNEKYGMWWLLAADFLK--IASKYWTERLVELNASSPV 208
               E +  +            +NEK+   W  A  FL+   A   + E L   NA    
Sbjct: 163 PIDKEYVDFVNSFKFFPSKKVRENEKFKKSWYNA-RFLQTPKAYVKYLELLDLFNAVDYN 221

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
             QI  + +  E+        I++     + P  A +   +    N        D     
Sbjct: 222 TVQIKFLESLKENPET-QYTNILVDEFQDTDPVQAEIFEIL--LKNAESFTAVGDVDQSI 278

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             +            +               L  L+        +   S           
Sbjct: 279 YSFRGSFRDYFEEFYNKYNAE----------LISLNYNYRSTNNIIRTSEAFIKPQR--- 325

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD----E 384
                         +  +  +   +       ++E+ + +EEA  I   ++   D     
Sbjct: 326 -------------KEYSKKYLVGARNEDKASYILESLDPQEEAQKIFNLIKDLKDNGKIR 372

Query: 385 NKKKSALITAD---RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                A++            +  E  +  I+  IS    L  +     + +L        
Sbjct: 373 QYSDVAILYRSIVSNKNIPFLIDEFKKNDISYHISGTENLIESDEVKSILTLF------- 425

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
               IA  + H        +++L+           +  K S +       + +       
Sbjct: 426 --YYIARKLDHSYGMSNLEKEWLNLRAFCGIDFIPKFRKLSVETKRYLMELQENFENDVL 483

Query: 502 NTHVPHWQSRLSEEDK---------ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            T    +     ++ +             +L++   +   P+V    +     G+     
Sbjct: 484 KTEKEVYFELTGKKSRKKKFNGVFTRNEDVLIEIFKRVNKPVVDL--DLIEDAGDREFFT 541

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
             +           DE  KL  L    E   L   F  ++      +        I   +
Sbjct: 542 ELEKLRE--NVFSSDEEDKLTILEVYYELLNLCGYFDDLVINNGDYELELENLSKISRTI 599

Query: 613 IDGETV--------------------KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
            + E++                             + ++   +++ L F   I+  L+E 
Sbjct: 600 FNYESIISAKDVRGLFFFLTNVIEGYGTSSSDVDGVQLMTVHKAKGLEFPVTIVSSLSEY 659

Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ---AAHDFEMANGTRHLIYTRSLRENNIP 709
            +P            +  D    T  K++     +  D                      
Sbjct: 660 NFPLAPRDPMREKDNINKDDTFYTPNKFLEYKDCSEADEVNLGLAEENRVIYVAMTRA-- 717

Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
                  Q +LVL           R   Y +    LD  +      +P+           
Sbjct: 718 -------QDILVLSVVGKMPEEICRISNYFNKNLDLDNMSISSVGSKPE------ENKLN 764

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
            S+S      N P+       L            + T  G++ H  +  + ++  +    
Sbjct: 765 LSYSSFADYNNCPWRYNLLNKLHFKVSQK-----EVTKMGSIIHEALDVINQEIKDAG-E 818

Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
                +++I    +                F     S  ++  +I   I  +   +P   
Sbjct: 819 ISKENIEKIAKDTYYLHGGTD-------EEFDDYMDSIFDYYNEIGFDITVVDSEVPFS- 870

Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
            I+       G  D I   ++G   I DYK     K    +K    QL     ALK
Sbjct: 871 -IDRDNYRFNGAIDLIYKNQNGEYGILDYK-NTIFKDYNREK-YAQQLLTYILALK 923


>gi|217958719|ref|YP_002337267.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH187]
 gi|251764503|sp|B7HZR5|ADDA_BACC7 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|217066718|gb|ACJ80968.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH187]
          Length = 1241

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 91/899 (10%), Positives = 213/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E   +G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEEGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHIRAGASCYLDWI 927

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + ++P         W   ++        + +++  Q  L+  R
Sbjct: 928  APSLYRHRDSEILLELGQGSVPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      +   K       +       + S   +                ++ +    R 
Sbjct: 988  EKKAVPLESERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIRTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITEEVIREQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGQSGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKS 1218


>gi|269128418|ref|YP_003301788.1| ATP-dependent DNA helicase PcrA [Thermomonospora curvata DSM 43183]
 gi|268313376|gb|ACY99750.1| ATP-dependent DNA helicase PcrA [Thermomonospora curvata DSM 43183]
          Length = 768

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 81/730 (11%), Positives = 185/730 (25%), Gaps = 82/730 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           A +     T +A  E+R     + G +S  +  + +           +        P   
Sbjct: 59  AQILAITFTNKAAGEMRERVQALVGPRSGAM-WVMTFHSACVRILRREARRLG--FPSNF 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +I    +  RL+ +   +L    +   P+S  +   +                 ++ E  
Sbjct: 116 SIYDAADAQRLMALVCRELDLDPRRYPPKSFSAQVSN-----------------LKNELI 158

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----A 219
            +E   A  +             L  A + +  RL +  A       +  +        A
Sbjct: 159 DYEAFKARASTHL-------EQKLAEAYEMYQARLQQAGAMDFDDLIMTTVHLLQAFPEA 211

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP----NGAIVLPGLDCHIPTAIWNTIT 275
               +     I++     +  A   L+  +   P      A +    D       +   T
Sbjct: 212 AEHYRRRFRHILVDEYQDTNHAQYELVRLLTESPGEDVGPAELCVVGDADQSIYAFRGAT 271

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++      +   +T            L+      + + + +N +  R+       L  D
Sbjct: 272 IRNILEFERDFPDATTIL---------LEQNYRSTQTILSAANAVIERNAHRKPKRLWSD 322

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALI 392
             +                    +    ADNE +EA  +A     L  +        A+ 
Sbjct: 323 QGEG-----------------EKIVGYVADNEHDEAAFVAAEVDRLTDAGLARPGDVAVF 365

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R  +    R G+   +  G+          L + L  +    D +++  ++  
Sbjct: 366 YRTNAQSRVFEEVFIRVGLPYKVVGGVRFYERKEVRDLLAYLRVLANPADTVSLRRILNV 425

Query: 453 PLAKFGFPEKYLSRAKNALELV-ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
           P    G   +    A  A E +      +    +  +       +            ++ 
Sbjct: 426 PRRGIGDRAEACVEAHAARERITFWEALRTPEQVPGMAPRSAKAVREFVALMDDLRERAA 485

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            +   + +  +L +              ++        +    +     L         +
Sbjct: 486 TATPAELIEAVLTETGYLAELQNSRDPQDETRIENLRELEAVAREFEDRLAERVPAAEEE 545

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                    G+ L     +I            +   I          +   ++   + ++
Sbjct: 546 EEEAPSGAAGR-LVDFLEQISLVADADAIPGTKGAPI------PPGERAPEDEQGVVTLM 598

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + L G+ +GV+P   A +       +  L      +   +       A
Sbjct: 599 TLHTAKGLEFPVVFLTGMEDGVFPHLRAMSNPQELEEERRLAYVGITR--ARQRLYLTRA 656

Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
                    RS         ASR+L  +         +                      
Sbjct: 657 -------VMRSAWGAPQVNPASRFLSEVPSSLVKWEREAAMPAPGSLTAMAAARPAARSA 709

Query: 752 PHYKRPKPFP 761
                P   P
Sbjct: 710 SARAVPALSP 719


>gi|332298133|ref|YP_004440055.1| UvrD/REP helicase [Treponema brennaborense DSM 12168]
 gi|332181236|gb|AEE16924.1| UvrD/REP helicase [Treponema brennaborense DSM 12168]
          Length = 710

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 73/728 (10%), Positives = 174/728 (23%), Gaps = 103/728 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PP 102
           + +     T +A +E+     E TGKK   L  + +      +    D+           
Sbjct: 53  SQILALTFTNKAAREMEERVKEHTGKKLQNL-TVSTFHAFGVKILRQDIEQLGWRPNFSI 111

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                R     +LI     +L      L                     +  +   I+  
Sbjct: 112 YDETDRN----QLIKETGRELGFTADALDVY-----------------KVGSLFSNIKIG 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
              W+   +              D  +   + +   L   NA          ++   EH 
Sbjct: 151 RWSWDSSDSKTRGN---------DQYRTLYEEYQSGLKLYNAVDFDDLITLPIKLFKEHP 201

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I++     +       M  +A+  N A+V    D       W     +
Sbjct: 202 DVLAKYRERYKYIMVDEFQDTSIQQYEFMHLLAD-KNVAVV---GDDDQSIYSWRGANYE 257

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +  +   +                                  +              +  
Sbjct: 258 NIRMFERDFPD--------------------------VKEIRLEQNYRSTETILAAANGV 291

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKKKSALITA 394
              NT+  +  + +       + +   +NE  EA  IA +++   M+         ++  
Sbjct: 292 ISHNTNRKDKSLWSGNGSGKPIEIYLPENEAAEADFIAESIQGICMAEKRKYDDFGVLMR 351

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++       I   +S G           + S L      +D + +  ++  P 
Sbjct: 352 ANTQSRALEEAFLEANIPYTMSGGTSFFQRKEIKDVISYLRVCANHDDDINLLRIINTPR 411

Query: 455 AKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLK-SLVLDRIATQKNNTHVPHWQSRL 512
              G    + ++   N  +                +           ++           
Sbjct: 412 RGIGRKTIEDINAVANERKCSLWDAINAILGTKAARVPESYGDDEDGESENFGTGSPESG 471

Query: 513 SEEDKELAVLLV---------DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
              D + A   +         + +   +  + T +       G    +      +     
Sbjct: 472 LFGDMDGANAGIGGVVSEKTREDLASFVQLITTQRALLLGGKGLAKKARALVDEIGYWDY 531

Query: 564 VCLDEHRKLPNLWFEEE-GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
           +  +  +      F+    ++L                +   +++ IT L   +      
Sbjct: 532 LIGEYQKNEKAARFKFLNIESLIQSMEAWENNPDNFDPSLFNYLNRITLLSRDD--MEDD 589

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                + ++    S+ L F  + + G  +G+ P   +       V +             
Sbjct: 590 SLKGKVNLMTIHASKGLEFPVVFIAGAEDGIIPHARSIEDGEENVEEER----------- 638

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNI-----PTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
                +      R  ++  S R+            SR+L  +                  
Sbjct: 639 --RLFYVAITRARDKLFISSCRKRRKMQSVVECTPSRFLDEIPEHLVEYHEPTAAVDTST 696

Query: 738 YLDWTRKL 745
             D    +
Sbjct: 697 AKDILEAM 704


>gi|254819357|ref|ZP_05224358.1| ATP-dependent DNA helicase PcrA [Mycobacterium intracellulare ATCC
           13950]
          Length = 780

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 77/724 (10%), Positives = 197/724 (27%), Gaps = 88/724 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T +A  E+R   + + G ++  +  + +              L       + 
Sbjct: 66  GQVLAITFTNKAAAEMRERVVRLVGNRARAM-WVSTFHSTCVRILRNQASL-------IE 117

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            +     +       R  L  I +D+  +     P            LA+ I  ++ E  
Sbjct: 118 GLNSNFSIYDADDS-RRLLQMIGRDMGLDIKRYSPRL----------LANAISNLKNELI 166

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
              D  +   +         A       +        L+    +G  +A++RA  +    
Sbjct: 167 DPADAVSKLTDDSDELSRTVASVYGEYQRRLRAA-NALDFDDLIGETVAVLRAFPQIAQH 225

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANHPNG-----------AIVLPGLDCHIPTAIW 271
            +     +++     +  A   L+  +                 A +    D       +
Sbjct: 226 YRRRFRHVLVDEYQDTNHAQYVLVRELVGRGGTEAPASSDDVPPAELCVVGDADQSIYAF 285

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
              T ++      +   +T            L+      + + + +N +  R+       
Sbjct: 286 RGATIRNIEDFERDYPDATTIL---------LEQNYRSTQNILSAANSVIARN------- 329

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKK 388
                     +   + ++   +     +    ADNE +EA  +A    AL    +     
Sbjct: 330 ----------SGRRDKRLWTAEGAGELIVGYVADNEHDEARFVAEEIDALADKGEITYND 379

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            A+     N +R ++    R GI   +  G+          + + L  +    D +++  
Sbjct: 380 VAVFYRTNNSSRSLEEVFIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSMRR 439

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
           ++  P    G   +                  +  D +   +     +   +    +  +
Sbjct: 440 ILNTPRRGIGDRAEACVAVYAEN------TGASFADALVAAAEGKVPMLNSRAEKAIAGF 493

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
              L E    L   L D +   +      +T       + S            + V +  
Sbjct: 494 VELLDELRGRLDDDLGDLVESVLE-----RTGYRRELESSSDPQELARLDNLNELVSVAH 548

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                    +   ++L +   + +     +     E+++ ++ + D + +         +
Sbjct: 549 EFSTDRANADALDESLHTPEDEDVPDTGVL----AEFLERVSLVSDSDEIPEDGAGM--V 602

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            ++    ++ L F  + + G  +G++P   + +       +  L      +   +     
Sbjct: 603 TLMTLHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPTELSEERRLAYVGITR--ARRRLYL 660

Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
             A         RS     +    SR+L+ +                   +    +    
Sbjct: 661 SRA-------IVRSSWGQPMLNPESRFLREIPQELIDWRRTAPAPSFSAPVSGVGRFGPP 713

Query: 749 TKQP 752
              P
Sbjct: 714 RAAP 717


>gi|152978934|ref|YP_001344563.1| DNA-dependent helicase II [Actinobacillus succinogenes 130Z]
 gi|150840657|gb|ABR74628.1| DNA helicase II [Actinobacillus succinogenes 130Z]
          Length = 731

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/689 (9%), Positives = 168/689 (24%), Gaps = 121/689 (17%)

Query: 50  YVPTKRAIQELRSEF---IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
              T +A  E+R      +     +      + +   +      A    +         +
Sbjct: 60  VTFTNKAAAEMRQRIESALARYSSQRLFGMWVGTFHSIAHRLLRAHYADA--------GL 111

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
            +  ++            D    L     L    +    ++ AK     I+  + E  + 
Sbjct: 112 PQDFQI-----------LDSEDQLRLVKRLLKLHNYDEKMYPAKQACWYINNKKDEGLRP 160

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-----EAEH 221
           + +  + + +   W            + + +              +              
Sbjct: 161 QQIDDMNDRQEQEW--------IKIYRIYQDTCNRAGLVDFAEILLRAYELFLHKPLILQ 212

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +   G I++     +       +  +A      +++   D       W     ++   
Sbjct: 213 NYQRRFGQILVDEFQDTNKIQYEWIRLLAGKTGNVMIV--GDDDQSIYGWRGAQIENIQK 270

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
              + +     Q    +L                                   +     N
Sbjct: 271 FLDDFS-----QAQTIRL---------------------EQNYRSTGNILQAANQLISHN 304

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLA 399
           ++ L   +         V +  A NE +EA+ ++  +++ L++     + A++    + +
Sbjct: 305 SNRLGKDLWTEDDKGEPVGIYAAFNELDEALFVSSQIKIWLEDGGKLDECAVLYRSNSQS 364

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           R ++  L R  I   I  G+            + L  +   +D  A   +V  P    G 
Sbjct: 365 RVLEEALIRAQIPYRIYGGMRFFERQEIKDALAYLRLVNNRHDDAAFERVVNTPTRGIGE 424

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                 R                +    +                          ++ E 
Sbjct: 425 RTLETLR------QFTRERQITLWQATQIAIQENKLAGRAATALMRFVELINSLAQETEE 478

Query: 520 AVLLVDHILQC-ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
             L          + L      +    G + I +  +L     + +  +E   + +L   
Sbjct: 479 MPLFAQTDFVIKHSGLYQMYEQEKGEKGEVRIENLEELVSAAREFIKPEEADDMSDL--- 535

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                                         +T        +      S + ++    ++ 
Sbjct: 536 ---------------------------TAFLTHASLEAGEEQAGPHQSCVQMMTLHSAKG 568

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHL 697
           L F  + + G+ EG++P                ++L+   +   +    +       + L
Sbjct: 569 LEFPRVFMVGVEEGIFPSF--------------MSLEEPGRLEEERRLAYVGVTRAKKKL 614

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVL 722
               +            I SR++  L   
Sbjct: 615 TICYAESRRLYGKEERHIPSRFINELPEE 643


>gi|254464957|ref|ZP_05078368.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium Y4I]
 gi|206685865|gb|EDZ46347.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium Y4I]
          Length = 789

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 81/726 (11%), Positives = 187/726 (25%), Gaps = 132/726 (18%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
             +   + +   +++       R +         +     T +A +E++     + G+  
Sbjct: 52  AGTGKTKALTTRIVHLLSTGRARPN--------EILSVTFTNKAAREMKERVGALLGQAV 103

Query: 73  TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
             +P + +   +                  V  ++R  ELA L   +     D    L  
Sbjct: 104 EGMPWLGTFHSIC-----------------VKLLRRHAELAGLKSNFTILDTDDQIRLLK 146

Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
           +  L       +  W A+ LA IID  +      + + A        +      F     
Sbjct: 147 Q--LIQAAGIDDKRWPARMLAGIIDDWKNRALTPDRVPAADAG---AYNNRGTGF----Y 197

Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-----GPIIIAGSTGSIPATARLMS 247
             +  RL ELNA       + ++     H     +       I++     +  A    + 
Sbjct: 198 AQYQTRLRELNAVDFGDLLLHMVTIFQNHPDVLEQYQRWFRYIMVDEYQDTNVAQYLWLR 257

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +A        +   D       W      +      +                      
Sbjct: 258 LLAGKHKNVCCV--GDDDQSIYGWRGAEVGNILRFEKDFP-------------------- 295

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                 G +   +                    N   L  ++         V LI   + 
Sbjct: 296 ------GAMVVRLEQNYRSTGHILAAAAGVIRGNQGRLGKELWTEAGDGEKVRLIGHWDG 349

Query: 368 REEAISIAIALRMSLDENK-------KKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            EEA  I   +       +        + A++    +  R  +      G+   +  G  
Sbjct: 350 EEEARWIGEEIEAMQRGTRGQAPLGLDQMAILVRASHQMRAFEDRFLTIGLPYRVIGGPR 409

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
               +      +    +   +D +A   +V  P    G   +   +       V      
Sbjct: 410 FYERMEIRDAMAYFRIVVSPDDDLAFERIVNTPKRGLGDKAQQTIQGLAREHGV------ 463

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                          +   +        + +     +ELA  +         P +T+   
Sbjct: 464 -------------SLVEGARIAVESGQIKGKGGGALRELAEGIARWGRMAGDPDLTHMEL 510

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                                      +      +W  ++          + E    +++
Sbjct: 511 AEIIL----------------------DESGYTAMWQNDKTPEAPGRLENLKELVKALES 548

Query: 601 --NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
             N   +++ ++ ++D +      +    + I+    ++ L F  + L G  +G++P   
Sbjct: 549 FENLQGFLEHVSLVMDNDK----QDADEKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQR 604

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN--IPTIASRWL 716
           + +         +  LK  E+    A      A     + +  + R        + SR++
Sbjct: 605 SMD---------ESGLKGLEEERRLAYVGITRAEQICTISFAGNRRVFGQWQSQLPSRFI 655

Query: 717 QRLLVL 722
             L   
Sbjct: 656 DELPEE 661


>gi|327463228|gb|EGF09549.1| exonuclease RexA [Streptococcus sanguinis SK1]
          Length = 1224

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 100/958 (10%), Positives = 235/958 (24%), Gaps = 123/958 (12%)

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            +L  +      + +  +  +   +  + +L               ++ K++  +   +  
Sbjct: 276  ALTALAGLNELSPIEETAQVLKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRK 335

Query: 140  ISPANAIWLAKNLA--DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                      + L   D I+  + E     +L                DF+   ++ + E
Sbjct: 336  PMIERLRSFDQQLYQMDFIEQHQDECLPLVEL--------------LRDFVADFAQAYLE 381

Query: 198  RLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            R    NA          +          H  +     +++     +     R++  ++  
Sbjct: 382  RKKVENAFEFGDISHFAIEILETFPEVRHFYQERYHEVMVDEYQDTNHTQERMLDLLSR- 440

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDI 305
              G       D       +     +  +            Q             L+ L+ 
Sbjct: 441  --GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKLIVLKENFRSHLEVLEA 497

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA- 364
              +  KRL +        +         P   +    +     I    K   +    E  
Sbjct: 498  TNDVFKRLMDEEVGEIDYNETHYLVAGNPSKREPNPANRASFLIYEGSKESPEEEADEGL 557

Query: 365  --DNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGI 419
                   E   +   +    +E     K   L+TA R     +     ++ I +    G 
Sbjct: 558  PQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLILAAFEQYQIPLVPDDGA 617

Query: 420  P-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL---VA 475
                 ++   ++   L  I    +  A+  L+K P+  FG  E      + + E      
Sbjct: 618  ANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQERSQENL 677

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI---LQCIT 532
                 N+     L   ++ +   +K        Q   +         L+  I        
Sbjct: 678  YEKLLNALQGRGLHPALITQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQDRFYYD 737

Query: 533  PLVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             + T            ++S    +   +  + +          L  + +    S   +  
Sbjct: 738  MVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIRMIDRILENQHDL--ASVPVAAP 795

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL--LNFDTLILGGL 649
             +    +  +  + ++     +         + SS+  IL   +        D  +    
Sbjct: 796  KDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVSVEE 855

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA--------NGTRHLI--- 698
            +        + +    +    +L L +  + +         A         G++ ++   
Sbjct: 856  SYAPNQLRISMDTLPYQQNLVELQLASLSEQMRLLYVAMTRAETKLYLIGKGSQEVLDKR 915

Query: 699  ---------YTRSLRENNIPTIASRW-----------LQRLLVLGGTDFFDNLKKR-GQC 737
                      + SLR          +                 +   +       R  + 
Sbjct: 916  QWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRINEP 975

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAV--YARRILKLD 794
             L     L    +     R         +  +   S I+   +  P  +  +   I+  D
Sbjct: 976  VLFPADDLADNRQSDDILRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIMDTD 1035

Query: 795  FIPHFKKDPDRT-------------------DRGTLFHNIITELIKKRINKNTPEINHLM 835
             +    +                          G+  H ++  +            + L 
Sbjct: 1036 GLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSSPSMAVLRSALA 1095

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM----AI 891
            +   D   +K+   P I   +     ++             + +++    P  M      
Sbjct: 1096 QVQADEAVKKQIQLPKIASFFETDLGRLL----------IENSDRVRREAPFAMLKRDDS 1145

Query: 892  ESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
                  L G  D   +       + + DYKT               QL L A AL   
Sbjct: 1146 SGQNFVLRGILDGYLLFED---RIILFDYKTDKYKDSSELLARYHGQLDLYAQALSRS 1200


>gi|289209414|ref|YP_003461480.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
 gi|288945045|gb|ADC72744.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
          Length = 685

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 80/713 (11%), Positives = 175/713 (24%), Gaps = 101/713 (14%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R        K+      + +           +L  S         
Sbjct: 52  RIVAITFTNKAAREMRERVQGRLSKEQARGLGVSTFHTFGLNFLRRELAASG-------- 103

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                    L   +    P   + L  E                  L   I   + +   
Sbjct: 104 ---------LRAGFSILDPGDCRSLLREITYRDDTGSEV-----DALIGHISRWKNDLMT 149

Query: 166 WE-DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA-----LMRAEA 219
            E  LH     +     + AA+        + + L   NA               + A+ 
Sbjct: 150 PEEALHEASQMRDAPEAIAAAN----LYPRYEDALRAYNAVDFDDLIKRPVDCLRVDADL 205

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
            +  +     +++     +  A  +L+  +    +G  V+   D       W     ++ 
Sbjct: 206 RNRWQDRIRHLLVDEYQDTNAAQYQLVRLLVGVSDGLTVV--GDDDQSIYAWRGARPENL 263

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                        Q    +L                   ++       ++     +    
Sbjct: 264 ARL----------QQDFPRL----------------EVIKLEQNYRSTNRILHTANALIA 297

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL---RMSLDENKKKSALITADR 396
            N  + E ++ +       + +I   +   EA  +   L   R  L+      A++    
Sbjct: 298 NNPHVFEKRLWSALGEGEKIEVIGCSDADTEAARVVSELMRRRFRLNATWGDFAILYRSN 357

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
           + +R  +  L   GI   +S G           L + L  +   +D  A   +V  P  +
Sbjct: 358 HQSRLFEKLLREQGIPYRLSGGQSFFEKAEIKDLVAYLRLLANPDDNTAFLRVVNVPRRE 417

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G                  RG                    Q        W        
Sbjct: 418 IGPATLEKLGHYA-----NQRGTSLLQAARGAGLSEYMDARAQARLERFTDWVDGFQRRG 472

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            E A  L   +   +  +        ++    + +   +     +  V           +
Sbjct: 473 TEEA--LDALLRALVEDIDYESWLLENSPNPRAATRRMENVREFIDWVGRMGGGSTSAEY 530

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            ++             E       +  + ++ I+ +   +  +   +   ++ +L    +
Sbjct: 531 GDD-------------EAEDDRGMDLADIVNRISLMDILDRNRESQDGDESVQLLTLHTA 577

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + L G  E +               +  +   + E+    A      A  T  
Sbjct: 578 KGLEFPHVCLVGFEEELL------------PHRVSVEDDSIEEERRLAYVGLTRAQQT-- 623

Query: 697 LIYTRSLRENNIP----TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
           L+ T + + +          SR+L  L                   L     L
Sbjct: 624 LLITYAQQRSRYGETIDCEPSRFLDELPEEHLEWPDAKPPDPETQQLTARAHL 676


>gi|42780319|ref|NP_977566.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987]
 gi|81569872|sp|Q73C23|ADDA_BACC1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|42736238|gb|AAS40174.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987]
          Length = 1241

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 93/899 (10%), Positives = 212/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWI 927

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 928  APSLYRHRDSEILLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      Q   K       +       + S   +                ++ +    R 
Sbjct: 988  EKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIQTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITEEVIREQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIAGKFPGGFDQAKPILEERYKVQLSLYAKALEKS 1218


>gi|262193706|ref|YP_003264915.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
 gi|262077053|gb|ACY13022.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
          Length = 688

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 80/731 (10%), Positives = 180/731 (24%), Gaps = 111/731 (15%)

Query: 33  NFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG-KKSTILPIIKSLGDVVEEKFTA 91
                 + P  +A+      T RA +E+R     + G +K+  +  + +   +      +
Sbjct: 44  RLLRSGIPPQAIAA---LTFTNRAAEEMRERVAALLGDRKTASMLTMGTFHSLGLRILRS 100

Query: 92  DLLLSYNLNPPV--SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
           +          V      +L  +  L+          ++ +     L             
Sbjct: 101 EHEAMGYPRGFVIYDTSDQLGVVRELLRGIDAGRRFDVRAILTRISL------------- 147

Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
                     +      E+     +++Y                 + E L    A     
Sbjct: 148 ---------AKNAFVFPEEYVPNGDDEYDE-------ITAEVYPRYQEALRAYAAVDFDD 191

Query: 210 YQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
              A +R   +        +     +++     +  A  + + T+        V+   D 
Sbjct: 192 LLTATVRMFDQRDDVRARWQEKFRFVMVDEYQDTNRAQLKFVKTLVAEHENLCVV--GDD 249

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 W      +             P   + KL          ++    V      R 
Sbjct: 250 DQSIYSWRGADPTNILHFDRMF-----PGARVIKLEQNYRSTPTILRAANAVIANNVNR- 303

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-- 382
                                   + +     + +    A +   EA  +A  +   +  
Sbjct: 304 --------------------HGKNLWSDIADGAKIVHASATDTESEARFVAREIGDIVGT 343

Query: 383 -DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
            +   +  A++      +R ++  L    I   +  G           L + L       
Sbjct: 344 DNLRYRDVAVLYRSNIQSRLIEESLRSASIPYVMYGGQQFYERKEVKDLIAYLRLALNQR 403

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
           D +A+  ++ +P    G                         D        + RI    +
Sbjct: 404 DEIALRRVINYPARGIGATTLKRVE-----------------DHARASRTSMWRILEGAS 446

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                      + +  E  V +++     +                + + D  +      
Sbjct: 447 QMAESDKMRPSTVQAIENFVAIIERTRASLDGGARIIDVTRRLIDEIQLYDDLRNASPSA 506

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                               ++L     +  E    + A A     +   +         
Sbjct: 507 AAAQRRID----------NVESLLRSLERHQEKRPGLGALAEYLRRLSLAVESEAG---- 552

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
            +  + + +     ++ L F  + + GL E + P      P  + VM  D     +E+  
Sbjct: 553 EDPGNKVVLTTLHGAKGLEFPIVFMIGLEEEILPHARTLKPQATDVMDLDHVTDVSEER- 611

Query: 682 GQAAHDFEMANGT-RHLIYTR----SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                 +       R L  TR      R  N+P   SR+LQ +      +     ++R  
Sbjct: 612 ---RLAYVGITRAQRKLYLTRTQVRVSRGKNLPRTPSRFLQEIPAELLEERDIQAEERAP 668

Query: 737 CYLDWTRKLDY 747
             +   R L  
Sbjct: 669 VSMGEARSLFQ 679


>gi|229166075|ref|ZP_04293837.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH621]
 gi|228617384|gb|EEK74447.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH621]
          Length = 1166

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 93/893 (10%), Positives = 212/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------- 223
              +            +K+ ++ +     +         +   ++  +E            
Sbjct: 263  DFQDMHPVLEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCLQILSEQSEDGEMKASAV 322

Query: 224  ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYSTH-------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGSGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GASYPEGEDVAAELLCIQQTEEEVQDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM----A 691
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 858

Query: 692  NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            +    ++                   ++ V+ G D       + +         D     
Sbjct: 859  HRDSEMLLELGKGNIPGEIYEYSASWKVEVVEGKDLLAPEPVQEEKQELLEALRDKKAVP 918

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 919  LESERKEEVYDRLMWEYGYADATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRAPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITIEVLQEQIARMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIHLTGFAD 903
                  K+   F     K   + + +   +P  M +                I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGKKGESILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|148654325|ref|YP_001274530.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
 gi|148566435|gb|ABQ88580.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
          Length = 751

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 85/812 (10%), Positives = 206/812 (25%), Gaps = 108/812 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +        ++P     +     T +A +E+R   + + G   +    + +   +
Sbjct: 39  VLTHRVAYLIGVQGVDPHT---ILAVTFTNKAAREMRDRLVALIGAGQSAALTVGTFHSI 95

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                  D++            +R   +       R  +  +++DL  +     P +   
Sbjct: 96  CARFLRRDIVHL--------GRERDFAIYDTDDQLR-VMKRVLRDLNLDEKKHPPRAIHA 146

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
           A          I   + E     D        +                 + E L + NA
Sbjct: 147 A----------ISRAKNELITPSDYSRHARSYFEEVTAR-------CFARYQELLRDSNA 189

Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  +  +R    H       +     ++      +  A   L+  +A       V+
Sbjct: 190 LDFDDLLVETVRLFDHHPTVLERYQERYRFLLADEYQDTNRAQYVLLKQLAARHRNIFVV 249

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       +     ++      +   +          +  L+      + + +V+  
Sbjct: 250 --GDEDQSVYAFRGADIRNILSFEQDYPDAQ---------VILLEQNYRSTQAILDVAQA 298

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
           +  RS                     E ++       + V LIE  ++ EEA  +A  + 
Sbjct: 299 VINRSA----------------QRRREKRLWTHNGAGAKVQLIEGYDQDEEAQLVAAEIA 342

Query: 380 MSL---DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             L          A++      +R V+  L    +   I  G             + L  
Sbjct: 343 RLLASGAYQPGDIAIMYRTNAQSRAVEEALLARQLRYVIVGGTRFYERKEIKDALAYLRL 402

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                D ++++ ++  P    G   +     +                 + L   +    
Sbjct: 403 ALNPFDDISLSRVLNWPARGIGQRTQEDLERRAG------------AAAVPLYVALQMLA 450

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
           A     +         +       + L+D ++     L T           +   +  + 
Sbjct: 451 AETDPASSAGGGAGGRARNVLLGFLSLIDEMIAQRQRL-TLGALMEWLFAQVGFREALQR 509

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                +     E R    L      +  ++L  +             +    +  +    
Sbjct: 510 EYGEEE----GEDRWNNVLELRNVAENYATLPIE------------SQLPTFLEEVALVS 553

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            +    E+   +  +   +++ L F  + L GL EG+ P   + +               
Sbjct: 554 DIDTLQEERDAITCITLHQAKGLEFPVVFLVGLEEGLLPHARSTD--------------D 599

Query: 677 AEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            +    +    +  A   +  L    + R             R L     D      KRG
Sbjct: 600 RDALDEERRLFYVGATRAKERLYLLHAFRRTTYGRADIATPSRFLHDIPPDLLQRTPKRG 659

Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                 +   +        ++ +  P   + P               +A +   I+    
Sbjct: 660 YAAQQSSLFTNRAAIAREQRQERTQPSRRSAPDGPRDVAFFAGQKVRHAQFGEGIVVSSK 719

Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
           +    ++      G     ++      +   +
Sbjct: 720 LVEGDEEVTVAFVGKGVKRLLASFANLQRADD 751


>gi|323136051|ref|ZP_08071134.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
 gi|322399142|gb|EFY01661.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
          Length = 778

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 78/684 (11%), Positives = 179/684 (26%), Gaps = 116/684 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R     + G+ +  +  + +   +  +                  
Sbjct: 77  EILAVTFTNKAAREMRERVEALVGEGAQAMQWLGTFHAISAKI----------------- 119

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +  +    +  +  W A+ LA  ID  +     
Sbjct: 120 MRRHAELVGLKPNFTILDTDDQIRLLKQ--VLQAENIDDKRWPARALAMRIDGWKNRGLT 177

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
              + A   E +      A          + ERL  LNA       +  +R   E+    
Sbjct: 178 PAQVPAGDAESFANGKGAAL------YALYQERLKILNAVDFGDLLLESLRLFRENPDVL 231

Query: 226 -----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    I++     +  A    +  ++        +   D       W     ++  
Sbjct: 232 AEYQKRFKYILVDEYQDTNVAQYLWLRLISQGRRNVCCV--GDDDQSVYGWRGAEVENIL 289

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +   +                              +                    
Sbjct: 290 RFEQDFPGAR--------------------------IIRLERNYRSTGHILAAASHLIAH 323

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398
           N D L   +         V L    + +EEA  I   +     ++   ++ A++      
Sbjct: 324 NEDRLGKTLFTDGAAGDKVTLTGVWDSQEEARVIGEDIEQLHRKSHSLEEIAILVRASFQ 383

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            R  +      G+   I  G      +      + L  + + +D +A   +V  P    G
Sbjct: 384 MREFEERFVEIGLPYRIIGGPRFYERMEIRDALAYLRCVAQPSDDLAFERIVNTPKRGLG 443

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                +       E +                                           +
Sbjct: 444 DATVQMLHEYGRRERI----------------------------------------PLMQ 463

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            A +LV+       P    +           + D           +    + ++      
Sbjct: 464 AARVLVETEELKPKPRGALRALICDFDRWRELIDVKPQHELAEMVLDESGYTEMWRQDKT 523

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            E         +++        +   +++ ++ +++ +  K +      + I+    ++ 
Sbjct: 524 PEAAGRLENLKELVRAMEEFP-DLAAFLEHVSLVMEADEAKEQ----ERVSIMTLHAAKG 578

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F+T+ L G  EG++P   + +         +      E+    A      A     + 
Sbjct: 579 LEFETVYLPGWEEGLFPHQRSLD---------EQGRAGLEEERRLAYVGITRAKRRAKIF 629

Query: 699 YTRSLRENN--IPTIASRWLQRLL 720
           +  + R      PT+ SR++  L 
Sbjct: 630 FASNRRIRGLWQPTVPSRFVDNLP 653


>gi|154685514|ref|YP_001420675.1| AddA [Bacillus amyloliquefaciens FZB42]
 gi|251764498|sp|A7Z368|ADDA_BACA2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|154351365|gb|ABS73444.1| AddA [Bacillus amyloliquefaciens FZB42]
          Length = 1235

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 111/895 (12%), Positives = 224/895 (25%), Gaps = 140/895 (15%)

Query: 167  EDLHALKNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            E L  L       +     +           Y    L    A    G +   + +EA   
Sbjct: 344  ETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILT---AVDEEGRR---VPSEAAVY 397

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +     +++     +      ++  V + +     +    D       +          
Sbjct: 398  YQDQFHEVLVDEYQDTNLVQESILQLVKSGNEEAGNLFMVGDVKQSIYRFRLAEPLLFLG 457

Query: 282  TSSNTTYSTHPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
                 T S                  D LD      K+L              +   L  
Sbjct: 458  KYKRFTESGAGAGQKIDLNQNFRSRSDILDSTNFLFKQLMGGK-IGEVDYDEQAALKLGA 516

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM-------------- 380
                          I +     S     + +    EA +IA  +R               
Sbjct: 517  SYPPNDAAKTELLLIDSADGADSSEDAEDFETVHWEAKAIAGEIRKLVSSPFKVYDGKTK 576

Query: 381  -SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               +   +   ++      A ++  EL   GI +  +        +  +   S+L  I  
Sbjct: 577  THRNIQYRDIVILLRSMPWAPQLMEELKNQGIPVYANLTSGYFEAVEVAAALSVLKVIDN 636

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                + +A++++ P+      E  L R          +          L +        Q
Sbjct: 637  PYQDIPLASVLRSPIVGCDENELALIRL------EKKKAPFYEALKAYLANADRHDELYQ 690

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
            K  T     Q   S         L+  + +                   ++        +
Sbjct: 691  KLRTFYDSLQKWRSFSTNHSVSELIWEVYRDTGYFDYAGGMPGGKQRQANLRVLYDRARS 750

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN------AIEWIDIITRLI 613
                      R L  +   +E          + E    ++         +E+  + T  +
Sbjct: 751  YEATAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFTAGL 810

Query: 614  DGE-------------------------TVKPKIEKSSTLFILGTLESRLL----NFDTL 644
                                         ++        + +   +   LL        +
Sbjct: 811  GRSFNMMDLNKSYLLDKELGFGTKYIHPELRISYPTLPLVAMKKKMRRELLSEELRVLYV 870

Query: 645  ILGGLNEG------VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE--MANGTRH 696
             L    E          +      + ++  ++D  L   ++Y   +  DF        R 
Sbjct: 871  ALTRAKEKLFLVGSCKNREKQLAKWQAQADRADWLLSEFDRYQASSYLDFIGPALIRHRD 930

Query: 697  LIYTRS---LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP- 752
            +   R+       +I    SR+  R+L        +N K+R +      + +      P 
Sbjct: 931  MEAHRTPGLSSSEDIARDPSRFHIRMLQQS-ELLEENPKERAEEKSKRLKAIQQGEPIPD 989

Query: 753  ----------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL--------D 794
                        +   P+  L A     S SE+K+          R ++K          
Sbjct: 990  SFSFDDQARRLLEWEYPYRELTAIRTKQSVSELKRKQEYEDEYSGRSLIKPSGDTLLYRR 1049

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                 KK     ++GT  H ++  +    +     E    ++ + +     E     ID 
Sbjct: 1050 PGFMMKKGLTAAEKGTAMHTVMQHIPLTHV-PTAEEAERTVRMLYEKELLTEEQQEAID- 1107

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI-----------HLTGFAD 903
                   +I   F     K      +I   +P  MA+ +  +            + G  D
Sbjct: 1108 -----IEEIVQFFGTEIGKDLLRALRIDREVPFSMALPAGEVYKDAETAGEPLLVQGIID 1162

Query: 904  RIDLLKSGFVDITDYKT------------GDNPKKETAQKLIDPQLSLEAAALKA 946
             +     G + + DYKT            G  P     QK  + Q+ L   A++ 
Sbjct: 1163 CLYETADG-LYLLDYKTDRIEGKFRNGFEGAAP---ILQKRYETQIELYTKAVEQ 1213


>gi|324993970|gb|EGC25889.1| exonuclease RexA [Streptococcus sanguinis SK405]
          Length = 1224

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 100/958 (10%), Positives = 235/958 (24%), Gaps = 123/958 (12%)

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            +L  +      + +  +  +   +  + +L               ++ K++  +   +  
Sbjct: 276  ALTALAGLNELSPIEETAQVLKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRK 335

Query: 140  ISPANAIWLAKNLA--DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                      + L   D I+  + E     +L                DF+   ++ + E
Sbjct: 336  PMIERLRSFDQQLYQMDFIEQHQDECLPLVEL--------------LRDFVADFAQAYLE 381

Query: 198  RLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            R    NA          +          H  +     +++     +     R++  ++  
Sbjct: 382  RKKVENAFEFGDISHFAIEILETFPEVRHFYQERYHEVMVDEYQDTNHTQERMLDLLSR- 440

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDI 305
              G       D       +     +  +            Q             L+ L+ 
Sbjct: 441  --GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKLIVLKENFRSHLEVLEA 497

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA- 364
              +  KRL +        +         P   +    +     I    K   +    E  
Sbjct: 498  TNDVFKRLMDEEVGEIDYNETHYLVAGNPSKREPNPANRASFLIYEGSKESPEEEADEGL 557

Query: 365  --DNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGI 419
                   E   +   +    +E     K   L+TA R     +     ++ I +    G 
Sbjct: 558  PQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLILAAFEQYQIPLVPDDGA 617

Query: 420  P-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL---VA 475
                 ++   ++   L  I    +  A+  L+K P+  FG  E      + + E      
Sbjct: 618  ANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQERSQENL 677

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI---LQCIT 532
                 N+     L   ++ +   +K        Q   +         L+  I        
Sbjct: 678  YEKLLNALQGRGLHPALITQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQDRFYYD 737

Query: 533  PLVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             + T            ++S    +   +  + +          L  + +    S   +  
Sbjct: 738  MVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIRMIDRILENQHDL--ASVPVAAP 795

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL--LNFDTLILGGL 649
             +    +  +  + ++     +         + SS+  IL   +        D  +    
Sbjct: 796  KDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVSVEE 855

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA--------NGTRHLI--- 698
            +        + +    +    +L L +  + +         A         G++ ++   
Sbjct: 856  SYAPNQLRISMDTLPYQQNLVELQLASLSEQMRLLYVAMTRAETKLYLIGKGSQEVLDKR 915

Query: 699  ---------YTRSLRENNIPTIASRW-----------LQRLLVLGGTDFFDNLKKR-GQC 737
                      + SLR          +                 +   +       R  + 
Sbjct: 916  QWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRINEP 975

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAV--YARRILKLD 794
             L     L    +     R         +  +   S I+   +  P  +  +   I+  D
Sbjct: 976  VLFPADDLADNRQSDDILRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIMDTD 1035

Query: 795  FIPHFKKDPDRT-------------------DRGTLFHNIITELIKKRINKNTPEINHLM 835
             +    +                          G+  H ++  +            + L 
Sbjct: 1036 GLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSSPSMAVLRSALA 1095

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM----AI 891
            +   D   +K+   P I   +     ++             + +++    P  M      
Sbjct: 1096 QVQADEAVKKQIQLPKIASFFETDLGRLL----------IENSDRVRREAPFAMLKRDDA 1145

Query: 892  ESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
                  L G  D   +       + + DYKT               QL L A AL   
Sbjct: 1146 SGQNFVLRGILDGYLLFED---RIILFDYKTDKYKDSSELIARYHGQLDLYAQALSRS 1200


>gi|319426282|gb|ADV54356.1| exodeoxyribonuclease V, gamma subunit [Shewanella putrefaciens 200]
          Length = 1228

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 87/788 (11%), Positives = 195/788 (24%), Gaps = 102/788 (12%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   L    R    N  LL S  I V +      LR E  +  G  + +      L   
Sbjct: 12  VLCAHLAAYLRQSVPNTRLLRSEHILVQSPGMSTWLRLEIAKQNGIAAALE---FPLPSS 68

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN-----------------KLPDII 127
              +    LL +       +      +L +L+                       L DI 
Sbjct: 69  FTWQLCHHLLPNVPKENAFTKAAMTWKLMQLLPRLLADDAFGPLRHYLGDISLHALSDIH 128

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW------ 181
           ++   E     P        L   +ADI D        W     +   +           
Sbjct: 129 RNGLDELAHQRPADDIKLYQLCGRIADIFDQYLVYRPDW-----MLAWEQNQHPTTLNKP 183

Query: 182 ----LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGS 235
                     L  A   +    +  +         AL+    +    +      + + G 
Sbjct: 184 LNEDQRWQPILWRALVAFNRDELNQSHYHRANLHSALIEVLNDPNTSLTPLPQRLFVFGI 243

Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA----------IWNTITEKSTNITSSN 285
           +   P T  ++  +A+  +  I+      H                    ++       +
Sbjct: 244 SSMAPQTLEVLYHLASRIDVIILSLSPCQHYWGDIIDPRHRARMAVQYAGKRQLAEQWED 303

Query: 286 TTYSTHPQYSL-----AKLLDFLDIKREDVKRLGNV---SNEMYGRSMVISKSFLPPDTS 337
                +P  +       +LLD L     +    G+                 S L     
Sbjct: 304 KLEVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNDPASHASMLHGVQY 363

Query: 338 DMRNTDILENKIPNIQKCFSDVALI-------------EADNEREEAISIAIALRMSLDE 384
           D+     L++ +      + ++A                  +   E  ++   L   L  
Sbjct: 364 DILEMQTLDSVLGPDAALYQNIAARRILKKDDESILVKSCHSPLREVETLHDHLLDMLSR 423

Query: 385 NKK----KSALITADRNLARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLN 435
           + +       ++  D          +             I+       +   +   +LL 
Sbjct: 424 HPQLSPKDIVVMMPDVAAYAPYIDAVFAAKQGLHYIPYAIADRGAAQESPLINSFLNLLG 483

Query: 436 AIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGNKNS--------YDI 485
                     I ++++ P  L +F   +  L   +  L+   +R  ++            
Sbjct: 484 INQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRDQQSRLKQGVPAF 543

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
                    +               +       +       + + +  +      +    
Sbjct: 544 EQNSWAFGIKRLILGYALSDDAPLYQDHLVVTGIEGQSAQALGKLLNFIEALDETQQILE 603

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNL------------WFEEEGKTLSSLFSKIIE 593
              + +       T L      +  +   L                 GK + +L +   +
Sbjct: 604 KPQTGAVRLMELTTLLDAFYDTDEDEREQLQDIRDAIATLEQELLSAGKPIEALSTAQAD 663

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
             + +  +         + +    V  +     ++     +  R + F  + L G+N+GV
Sbjct: 664 IATSLTLSIEVLQQWFNQRLTESRVGQRYLAG-SVNFCTLMPMRSIPFKLVCLLGMNDGV 722

Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTI 711
           +P+      F             + +   +      + +    L  +   R   +N   I
Sbjct: 723 YPRVQHPVGFDLMAHFGPRKGDRSRRLDDRYLFLEALLSAREQLYISYIGRSERDNSERI 782

Query: 712 ASRWLQRL 719
           AS  +  L
Sbjct: 783 ASMLVSEL 790


>gi|324325258|gb|ADY20518.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar
            finitimus YBT-020]
          Length = 1241

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 92/899 (10%), Positives = 211/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREYSEWLLPDHIRAGASCYLDWI 927

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + ++P         W   ++        + +++  Q  L+  R
Sbjct: 928  APSLYRHRDSEILLELGQGSVPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      Q   K       +       + S   +                ++ +    R 
Sbjct: 988  EKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIQTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITEEVIREQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
                        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFQQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIAGKFPGGFDQAKPILEERYKVQLSLYAKALEKS 1218


>gi|311111762|ref|YP_003982984.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931]
 gi|310943256|gb|ADP39550.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931]
          Length = 1449

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 77/779 (9%), Positives = 167/779 (21%), Gaps = 141/779 (18%)

Query: 46  SVTIYVPTKRAIQELRSEFIEIT---------------GKKSTILPIIKSLGDVVEEKFT 90
            V     T++A  ELR                          +  P + +          
Sbjct: 97  EVLGVTFTRKAAGELRDRMRTRLNILRERNLIELSEEELLAGSSEPTVSTYHSYANNLVK 156

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
              L           +++  ++      W+     +          S  +  A+   + +
Sbjct: 157 EYGLRL--------GVEQDAQMLGDAQAWQLAAQIVQYWDGDLPAASSALGVASKSTIVQ 208

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWL-----------------LAADFLKIASK 193
           +L  +           + +    +     +                    A   L    +
Sbjct: 209 SLLQLSGECAEHLVSPQQVIEFCSAHLAAYESLSSPGPSANAKKVIERLKAKIILAQLVQ 268

Query: 194 YWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            +      +             R       A  L +     +++     +  A  RL + 
Sbjct: 269 RYARVKARMQVLDYGDLIALAARIAREVPAAAQLERERYKVVLLDEFQDTSHAQLRLFAD 328

Query: 249 VANHPNGA---------IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH-PQYSLAK 298
           +    +G           V+   D       +   ++                P Y    
Sbjct: 329 LYGAGDGHDGRPGQPEHPVMAVGDPKQSIYGFRGASDGQLFSFYQYFPTRDETPLYLTVA 388

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
             + + I          + N              P        + +L       +     
Sbjct: 389 WRNDVAILDAANLIAAKLKNIPDWVRAPA----PPHVPDLRPRSVVLNPDESGYRAMLGS 444

Query: 359 VALIEADNEREEAISIAIALRMSLDENKK------KSALITADRNLARRVKLELTRFGIN 412
           V L    +E EEA  IA  +                 A++T  R     ++      G+ 
Sbjct: 445 VQLARYGSETEEAQGIAERIVQERARYANTPEQMPTMAVLTRTRAQMEPIRQACESLGVP 504

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK---------------- 456
           + +     L        + S+L  +   N   A+  L+     +                
Sbjct: 505 VQVVGLGGLLERPEIIDMVSMLRVLADPNRSDALMRLLAGARWRLGTADLLALGDWSNYL 564

Query: 457 ----------------------------FGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
                                           +  L  A    E V     ++  +   L
Sbjct: 565 TTTREKNMGRTFGEQSSGETSGDVPSSPQTDTDANLRAAHEEFERVRKNAVEDLAEYGSL 624

Query: 489 KSLVLDRIATQKN-----NTHVPHWQSRLSEEDKELAVLLVDHILQCITP---------- 533
              +    A  +          P  + RLS E           +                
Sbjct: 625 IEAIEHLPAADEAGNPIYPADYPESRRRLSVEGLRRLHAFTAEVEYLRQFTTEDIGTLLY 684

Query: 534 ------LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS-- 585
                 L+  +                        +      R    L+   +G  +   
Sbjct: 685 EIERVMLLDIELAARPGGDAYGSRAHLDAFHEVAASYAASSPRINAMLYAGADGTEVDED 744

Query: 586 ---SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
              +    +   G       + W++       G T   +  +   + IL    S+ L +D
Sbjct: 745 APTARRFVLSANGISYLLGFLSWLEQAQNHERGLTPAEEEPRRDAVQILTMHASKGLEWD 804

Query: 643 TLILGGLNE------GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
            + L  + +        W +    +         D      E+    +A +       R
Sbjct: 805 HVYLPRMCDKYPTRPHTWHRLEHGSLPWPLRGDRDYLPSALERAEEVSALENYKELNAR 863



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 63/372 (16%), Positives = 101/372 (27%), Gaps = 58/372 (15%)

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
             +       +      P+        +   LE      D    G +    WP +      
Sbjct: 1084 RYAREPLAQLAQGKQGPEQPGVRPQIVHRFLEPAAWVKDNPQQGSVLTADWPFDPFDGAQ 1143

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
            + R        +  E     A      A         R  R        S  L  L  L 
Sbjct: 1144 VIRWASEKDLAERTENRDIIAVPGQRRA---------RVERTALNVARGSLSLDELDKLT 1194

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                 +  +   Q +      L          +    P +  +P   S S +  L  D  
Sbjct: 1195 SPTEAEAQQI--QDWEHEVDLL------LALAQRAVTPAVPTKPEHMSASTLIALSEDKE 1246

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
                 R+++   +           +GTLFH  + E                M  I D  +
Sbjct: 1247 T-VLSRLVRPVPMQPSA----AARQGTLFHAWVEEYFGDEP----------MLDIQDELY 1291

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
              ++L    D        K+  +FLE E   ++         P +  +   G+++ G  D
Sbjct: 1292 SDDDLDGSFD------LDKLRATFLESEWASRTIWR---AEYPVETHVA--GVNIRGRID 1340

Query: 904  RIDLL------KSGF------VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
             +           G        D+ D+KTG  P    A +    QL+L   A        
Sbjct: 1341 AVFRRTEQVTNADGTLQEQEHWDLVDWKTGRKPS-AHAMRHKRIQLALYRLAFAK--IQG 1397

Query: 952  IDCRKVANLFYI 963
            ID   V   FY 
Sbjct: 1398 IDPECVHAAFYY 1409


>gi|229154809|ref|ZP_04282924.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 4342]
 gi|228628757|gb|EEK85469.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 4342]
          Length = 1166

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 94/899 (10%), Positives = 210/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQTMKRDKGMVDFTDLEHFCLQILSEQSENGEMKPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 612

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 613  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 672

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 673  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 732

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 733  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 792

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 793  AEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWI 852

Query: 690  M--ANGTRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKL 745
                   R       L + +IP     +     V    G         + +         
Sbjct: 853  APSLYRHRDSEILLELGQGSIPDEIYGYSASWKVEVVDGNTLLAPEPVQEEKQELLEALR 912

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARR 789
            +        +R +           Y          S +EIK+        ++ +    R 
Sbjct: 913  EKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 972

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 973  PIRTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITIEVLQEQIAGMVNKELL- 1026

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1027 -TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1085

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1086 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKS 1143


>gi|170016834|ref|YP_001727753.1| ATP-dependent DNA helicase PcrA [Leuconostoc citreum KM20]
 gi|169803691|gb|ACA82309.1| ATP-dependent DNA helicase PcrA [Leuconostoc citreum KM20]
          Length = 749

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 68/695 (9%), Positives = 171/695 (24%), Gaps = 113/695 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R     +               DV  + + +           V  
Sbjct: 56  RILAITFTNKAAREMRERIAALLS------------EDVARDIWVSTFHAL-----AVRI 98

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  E   L   +        + L       L +         + +  +I   + +  +
Sbjct: 99  LRRDGEAIGLAKNFTIIDTSAQRTLMKRVINDLNLDTNQYDP--RTILGMISNAKNDMLR 156

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-----EAE 220
             D     +  +        + +      +   L    +       +  +       E  
Sbjct: 157 PRDYAKAADNAF-------QETVAEVYTAYQAELKRSQSVDFDDLIMLTIDLFQSAPEVL 209

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     + +     +  A   +++ +A       V+   D       W      +  
Sbjct: 210 ARYQQQFEYLHVDEYQDTNDAQYTIVNLLAQRSKNLAVV--GDADQSIYGWRGANMNNIL 267

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                               +  +              +     
Sbjct: 268 NFEKDYPN--------------------------AHTVMLEQNYRSTQNILDAANAVINH 301

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISI---AIALRMSLDENKKKSALITADRN 397
           N + +  K+         +    A  E +EA  I      LR +        A++     
Sbjct: 302 NNERVPKKLWTENGKGDQITYYRAQTEHDEANFILSNIQQLRETKHMAYSDFAVLYRTNA 361

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L +  +   +  G           + + ++ I   +D  A   +V  P    
Sbjct: 362 QSRNIEESLVKANMPYSMVGGHKFYERKEILDIMAYMSLITNPDDNAAFERVVNEP---- 417

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                         L +  L R+    N  +V + ++  S E  
Sbjct: 418 ---------------------------KRGLGATSLTRLRELANRLNVSYMKAIESIELA 450

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL-DEHRKLPNLW 576
                           ++     ++       +++         Q +   ++      L 
Sbjct: 451 PSITTKAASKFLTFAEMMHNLRQQSEFLNVTELTELVMTQSGYRQMLAEKNDPDSQARLE 510

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             EE  +++  F    +       +     D +        +    E    + ++    +
Sbjct: 511 NLEEFLSVTKEFDDKYQ--PEDPESIDPVTDFLGTTALMSDLDDFEEGDGAVTLMTLHAA 568

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + L GL EG++P +           ++ ++    E+    A      A   + 
Sbjct: 569 KGLEFPVVFLIGLEEGIFPLS-----------RAMMDEDLLEEERRLAYVGITRAM--KK 615

Query: 697 LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDF 727
           L  T +              SR++  +        
Sbjct: 616 LFLTNAFSRLLYGRTQANEPSRFIAEISPELLETA 650


>gi|226947151|ref|YP_002802224.1| exodeoxyribonuclease V subunit gamma [Azotobacter vinelandii DJ]
 gi|226722078|gb|ACO81249.1| exodeoxyribonuclease V, gamma subunit [Azotobacter vinelandii DJ]
          Length = 1168

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 95/875 (10%), Positives = 217/875 (24%), Gaps = 71/875 (8%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L    VE  R  PL P  L    + V +   +Q L+       G        ++     +
Sbjct: 22  LRELAVEWMRRHPLAP--LEDEVVLVQSNGIVQWLKLALAGRDGCGIAAAIRVELPARFL 79

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
            + + A L  +    P  S + +     RL+ +  N L            L         
Sbjct: 80  WQSYRAVLGSAG--IPRESPLDKAPLTWRLMRLLPNLLEGEAFAPLRRF-LEDDSDLRKR 136

Query: 146 IWLAKNLADIIDIIETEEKKW--EDLHALKNEKYGMWWLLAADFLKIASKY-WTERLVEL 202
             LA+ LAD+ D  +     W  +        +         D         W   L ++
Sbjct: 137 HQLAERLADLFDQYQVYRADWLADWAEGHDRLRTSRDGARPLDEAARWQPALWRALLADV 196

Query: 203 NASSPVGYQI----ALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
              +    +       +                +++ G +         ++ +A      
Sbjct: 197 GRDTVATSRAGVHLRFVERLRGLDAPPPGLPRRVMVFGISSLPAQALEALAALARFSQVL 256

Query: 257 IVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
           + +     +    I             ++  +  +   +     Q++   L  +    R+
Sbjct: 257 LCVHNPCRYHWGDIVPDQDLLRHQYRRQRRKDGMAPGLSAEDLHQHAHPLLAAWGKQGRD 316

Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK-------------- 354
            +  L    +  + R    S         +                              
Sbjct: 317 YINLLDRYDDPEHYRERFASLGGRIDLFDEEDGPRPGHLLGQLQDDILHLRTLEETRKEW 376

Query: 355 ------CFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALITADRNLARRVKLEL 406
                     +    A + + E   +   L  R + D   +   +I    ++        
Sbjct: 377 PLVDPKADRSLRFHIAHSAQREVEILHDQLLARFAADPGLRPREVIVMVPDVNAYAPHIQ 436

Query: 407 TRFGINIDISAGI---PLSTT------LHSSILTSLLNAIFKLNDFMAIATLVKHP--LA 455
             FG             L+             +  LL           +  L+  P   A
Sbjct: 437 AVFGQYARDDDRYIPFSLADQGQRGCDPLPIAVEQLLKLPEGRLTVSEVLDLLDVPALRA 496

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHW 508
           +F   E  L   +  +E   +R   ++     L       ++     +        V   
Sbjct: 497 RFAIEESDLPTLRRWIEGAGIRWGLDAERRAGLGLPAGLEQNTWRFGLRRMLLGYAVGSG 556

Query: 509 QSRLSEEDKELAVLLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                 E  +    L   ++  +   L             ++ ++W ++    L +  L 
Sbjct: 557 APCAGIEPFDEIGGLEAVLIGPLVRLLEALDDLHRRLARPVAPAEWGRILQAMLGDFFLA 616

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
              +   L   + G+ L                      +    L+D   +  +    + 
Sbjct: 617 RSERDETL-LGQLGEALEEWLELCAGVDLDEPLPLGVVREAWLGLLDRGRLSQRFLAGA- 674

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
           +     +  R + F  + L G+N+G +P++     F           ++  +       +
Sbjct: 675 VNFCTLMPMRAIPFRVVCLLGMNDGDYPRSQTPLDFDLMAGDYRPGDRSRREDDRYLLLE 734

Query: 688 FEMANGTRHLIYTRSLRENNIPTIASRWL----QRLLVLGGTDFFDNLKKRGQCYLDWTR 743
             +A     L  +   R           +     R  +  G    +   +      D  +
Sbjct: 735 ALLAAR-EQLYVSWVGRSVRDNCERPASVLVGQLRDHLASGWRLPEEYHEASDSEADKAK 793

Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
           +L       H  +P      E     +S++     ++      A     L          
Sbjct: 794 RLLAALTTEHPLQPFSRRYFEGDDALFSYAREWAALH-RRDAPAGAARALPPFEPDGALA 852

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
             T +  L   +     ++        +   + + 
Sbjct: 853 LETLQNFLRDPVKHFFTQRLKVHLDESMQAQLDEE 887


>gi|166367339|ref|YP_001659612.1| ATP-dependent helicase [Microcystis aeruginosa NIES-843]
 gi|166089712|dbj|BAG04420.1| ATP-dependent helicase [Microcystis aeruginosa NIES-843]
          Length = 773

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 82/741 (11%), Positives = 200/741 (26%), Gaps = 128/741 (17%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP---IIKSLG 82
           L   +    R+  ++P    ++     T +A +E+++   +   ++         ++ L 
Sbjct: 40  LTYRIAHLIRHHGVDPE---NILAVTFTNKAAREMKTRIEKTFAQQKAQEKYGQRLELLE 96

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
           +  ++K  + +   Y     +     L    R++    NK  D     +  +   +  S 
Sbjct: 97  EYEQKKLFSQVYRHYTKKLWIGTFHSLC--GRILRYDINKYQDEYGHSWQRNFSIMDESD 154

Query: 143 ANAIW---------------LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
           A ++                 A+NL   I   +       D        +          
Sbjct: 155 AQSLVKNIVTKQMNLDDKKFDARNLRYAISNAKNLGLTPTDYARENP-HFRG------KV 207

Query: 188 LKIASKYWTERLVELNASSPVG------YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
           +    + +  +L + NA                  +   +        I++     +   
Sbjct: 208 ISEVYQAYQMQLAQNNALDFDDLILVPVRLFQQNESILGYWHT-QFKHILVDEYQDTNRI 266

Query: 242 TARLMSTVANHPN---------GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
              L+  ++ +              +    D       +            ++       
Sbjct: 267 QYELIRLLSTNGETKKSEWNWTDRSIFVVGDADQSIYSFRMADFTILLNFQADFGD---- 322

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
                       +  +D + +  +      R  ++  +    +    +N+  ++  +   
Sbjct: 323 -----------GLPDDDTRTMVKLQENYRSRENILQAANKLIE----KNSQRIDKVLVPT 367

Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS----ALITADRNLARRVKLELTR 408
           ++    + + +A +E+EEA  +   +R    EN + +    A++      +R  +  L R
Sbjct: 368 REGGESIYVFKARDEQEEAAFVIDKIREFTQENPELTWGSFAILYRINAQSRPFEDGLIR 427

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
             I  +I  G             + L  I    D +++  ++  P               
Sbjct: 428 NNIPYNIVGGFKFYDRQEIKDAIAYLRVIANPADTVSLLRIINTP--------------- 472

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                   R       I +L     +                     D+     L     
Sbjct: 473 --------RRGIGKTTIDNLLKAAQELGVPL-----------WEIISDETSVNTLAGRAT 513

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE-EEGKTLSSL 587
           + I  L     N      +LS S+     +     +   + +         E  + L S 
Sbjct: 514 KSINKLAKIIQNLQEKITDLSASEILDQIMEDSGYIDELKQQGTEEADTRIENIQELYSA 573

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
             +  E             + +        +    E    + ++    ++ L F  + L 
Sbjct: 574 VVQFQEENEE-----TNLQEFLASASLASDLDNLQEGQEKVSLMTLHSAKGLEFPIVFLV 628

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL--- 703
           GL +G++P N +              L        +    +      +  L  T +    
Sbjct: 629 GLEQGIFPHNRS--------------LNDPIALEEERRLCYVGVTRAKEQLFLTYAKERY 674

Query: 704 -RENNIPTIASRWLQRLLVLG 723
              N    +AS++LQ L    
Sbjct: 675 VWGNKEMKVASQFLQELPPEL 695


>gi|87300614|ref|ZP_01083456.1| ATP-depentend DNA helicase [Synechococcus sp. WH 5701]
 gi|87284485|gb|EAQ76437.1| ATP-depentend DNA helicase [Synechococcus sp. WH 5701]
          Length = 602

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 73/682 (10%), Positives = 171/682 (25%), Gaps = 110/682 (16%)

Query: 46  SVTIYVPTKRAIQELRSEF---IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            +     T +A  E+RS     ++++  ++ +     +      E               
Sbjct: 19  RILGVTFTNKAAGEMRSRLEGLLDVSKDRALL----TTFHSFAAEILRQHGH-------- 66

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
              ++    +               + +  E+   L    A+ I  A N   +ID +  E
Sbjct: 67  YIGLRPDFTIL--------VEQADREAVATEAMKMLSEDVADTIPGASNALPLIDKMLAE 118

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               E+L     E          +FL      +  +L++ N            +   E  
Sbjct: 119 CSNPEELAERLGEH------KHKEFLSQLFNAYRSKLIKGNHLDFASLIGMAAQLLEERP 172

Query: 223 MKGT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                       I +     +     RL+ ++       + +   D       WN    K
Sbjct: 173 AIARQFQRVYRYICVDEFQDTNKTQFRLLCSLVPEERPNLFV-VADDDQLIYQWNGANPK 231

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                 +  +        + +L +        ++   N+      RS             
Sbjct: 232 RLQELQNRFSVE------IVQLPENYRCPPAVIELANNLIIHNLDRSA------------ 273

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397
                     +   +    + + +    + R+E   +   L+ +  +++  + ++   + 
Sbjct: 274 -----GKERLRAHKVSTADTHLRVFYFGDFRQEVEWVVDELKKTPPDSRNSTVVLGRSKK 328

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
           L   V  E  + G    IS       +   + L + L       D   +  + K      
Sbjct: 329 LLDAVITECKQQGFPAYISIRKSQFISAPVTWLHAALRLANARQDREQLRRVCK------ 382

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                + S   N + +  +    +      L+  +   +  Q  +     +   +     
Sbjct: 383 ----AFFSLEGNNIRVEDVVATSSFQGGDYLRGWLEAALDQQTVSVATRGFLEHMKNTLL 438

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           E     +                         I    +            ++        
Sbjct: 439 ERLNHWL------------------------FIDSAFRWLDAIQNQPAATDNAFDEYQVE 474

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           ++    L     ++I+     + +    +            K        +  +    S+
Sbjct: 475 KDVWFLLQ---QEVIQQYGKDEVSLHSLLQEF-----DLRSKEAPPPKDAVRCMTIHSSK 526

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + L GL E            L           + E    +      +      L
Sbjct: 527 GLEFKRVYLLGLVEDQ----------LPSWAARKKGDDSFEMSEERRNCFVAITRAEEEL 576

Query: 698 IYTRSLRENNIPTIASRWLQRL 719
           I + S R    P   SR+L  +
Sbjct: 577 ILSYSDRYFGYPKTPSRFLTEM 598


>gi|324994711|gb|EGC26624.1| exonuclease RexA [Streptococcus sanguinis SK678]
          Length = 1224

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 100/958 (10%), Positives = 235/958 (24%), Gaps = 123/958 (12%)

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            +L  +      + +  +  +   +  + +L               ++ K++  +   +  
Sbjct: 276  ALTALAGLNELSPIEETAQVLKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRK 335

Query: 140  ISPANAIWLAKNLA--DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                      + L   D I+  + E     +L                DF+   ++ + E
Sbjct: 336  PMIERLRSFDQQLYQMDFIEQHQDECLPLVEL--------------LRDFVADFAQAYLE 381

Query: 198  RLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            R    NA          +          H  +     +++     +     R++  ++  
Sbjct: 382  RKKVENAFEFGDISHFAIEILETFPEVRHFYQERYHEVMVDEYQDTNHTQERMLDLLSR- 440

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDI 305
              G       D       +     +  +            Q             L+ L+ 
Sbjct: 441  --GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKLIVLKENFRSHLEVLEA 497

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA- 364
              +  KRL +        +         P   +    +     I    K   +    E  
Sbjct: 498  TNDVFKRLMDEEVGEIDYNETHYLVAGNPSKREPNPANRASFLIYEGSKESPEEEADEGL 557

Query: 365  --DNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGI 419
                   E   +   +    +E     K   L+TA R     +     ++ I +    G 
Sbjct: 558  PQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLILAAFEQYQIPLVPDDGA 617

Query: 420  P-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL---VA 475
                 ++   ++   L  I    +  A+  L+K P+  FG  E      + + E      
Sbjct: 618  ANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQERSQENL 677

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI---LQCIT 532
                 N+     L   ++ +   +K        Q   +         L+  I        
Sbjct: 678  YEKLLNALQGRGLHPALITQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQDRFYYD 737

Query: 533  PLVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             + T            ++S    +   +  + +          L  + +    S   +  
Sbjct: 738  MVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIRMIDRILENQHDL--ASVPVAAP 795

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL--LNFDTLILGGL 649
             +    +  +  + ++     +         + SS+  IL   +        D  +    
Sbjct: 796  KDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVSVEE 855

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA--------NGTRHLI--- 698
            +        + +    +    +L L +  + +         A         G++ ++   
Sbjct: 856  SYAPNQLRISMDTLPYQQNLVELQLASLSEQMRLLYVAMTRAETKLYLIGKGSQEVLDKR 915

Query: 699  ---------YTRSLRENNIPTIASRW-----------LQRLLVLGGTDFFDNLKKR-GQC 737
                      + SLR          +                 +   +       R  + 
Sbjct: 916  QWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRINEP 975

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAV--YARRILKLD 794
             L     L    +     R         +  +   S I+   +  P  +  +   I+  D
Sbjct: 976  VLFPADDLADNRQSDDILRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIMDTD 1035

Query: 795  FIPHFKKDPDRT-------------------DRGTLFHNIITELIKKRINKNTPEINHLM 835
             +    +                          G+  H ++  +            + L 
Sbjct: 1036 GLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSSPSMAVLRSALA 1095

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM----AI 891
            +   D   +K+   P I   +     ++             + +++    P  M      
Sbjct: 1096 QVQADEAVKKQIQLPKIASFFETDLGRLL----------IENSDRVRREAPFAMLKRDDS 1145

Query: 892  ESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
                  L G  D   +       + + DYKT               QL L A AL   
Sbjct: 1146 SGQNFVLRGILDGYLLFED---RIILFDYKTDKYKDSSELLARYHGQLDLYAQALSRS 1200


>gi|238783715|ref|ZP_04627735.1| Exodeoxyribonuclease V gamma chain [Yersinia bercovieri ATCC 43970]
 gi|238715428|gb|EEQ07420.1| Exodeoxyribonuclease V gamma chain [Yersinia bercovieri ATCC 43970]
          Length = 1087

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 84/731 (11%), Positives = 180/731 (24%), Gaps = 83/731 (11%)

Query: 56  AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115
             Q L+ +  +     + I      L           +L         S      +L  L
Sbjct: 1   MAQWLQMQLAQQFSIAANIE---FPLPATFIWDMFTRVLPGIPKESAFSKDAMTWKLMWL 57

Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK----WEDLHA 171
           +      L D       +  LS          LA  +AD+ D       +    WE    
Sbjct: 58  LP----DLLDDPVFASMKRYLSDDGDKRKIHQLAARVADLFDQYLVYRPEWLEAWERGQL 113

Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG--TKGP 229
           ++       W        +    +T  L +             +R   +  +        
Sbjct: 114 IEKLDDAQLWQAKLW---VKLTDYTRELDQPEW-HRANLYQRFIRMLLDSDICPVGLPKR 169

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
           + I G +   P   + +  +  H +  ++      +    I +                 
Sbjct: 170 VFICGISALPPIYLQALQALGKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYRE 229

Query: 290 T------------HP------------QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
           +            HP            Q     LL        D   L +  +++     
Sbjct: 230 SIEGKSIEVKLFRHPEQAEQLFNADGEQDLSNPLLASWGRLGRDHMYLLSQVDDIQEVHA 289

Query: 326 VIS---------------KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
            +                +            T    ++   +      ++L    + + E
Sbjct: 290 FVDIEADNLLHGIQHDMLELEDHAIIGTTPETLAHSDQKRVLDPADRSLSLHVCHSPQRE 349

Query: 371 AISIAIALRMSL----DENKKKSALITADRNLARRVKL-----ELTRFGINIDISAGIPL 421
              +   L   L    +   +   ++ AD +                  +   IS     
Sbjct: 350 VEVLQDNLLRLLAADPELTPRDIIVMVADIDSYTPYIQATFGNATGGRYLPFAISDRKAS 409

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRAKNALELVALRGN 479
                     +LL+          +  L++ P     F   E  L R +  +    +R  
Sbjct: 410 QAHPVLQAFITLLDLPQSRFTSEQVLALLEVPALANKFAITEDGLRRLRQWVGESGIRWG 469

Query: 480 KNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
            +  ++ +L        +                           + +  L   +   + 
Sbjct: 470 LDDDNVRELSLPATGQHTWHFGITRMLLGYAMDSGAGDWQGVLPYDESSGLAAELAGQLA 529

Query: 533 P-LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             L+     +     + S+SDW  L  + L      ++     L   E  +    + S  
Sbjct: 530 DMLMHLSQWRLLLSESRSLSDWLPLCRSLLDTFFESDNDTEAVLVLIE--QQWQKVVSYG 587

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
           I              D +   +D E +  +      +     +  R + F  + L G+N+
Sbjct: 588 IAAQYPDVVPLNLLRDELASRLDNERISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMND 646

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNI 708
           G++P+      F   +M   +      +         E      + L  +   R   +N 
Sbjct: 647 GIYPRTLPPLGF--DLMAKQVRRGDRSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNS 704

Query: 709 PTIASRWLQRL 719
               S  +  L
Sbjct: 705 KRYPSVLVSEL 715


>gi|194467460|ref|ZP_03073447.1| ATP-dependent nuclease subunit B [Lactobacillus reuteri 100-23]
 gi|194454496|gb|EDX43393.1| ATP-dependent nuclease subunit B [Lactobacillus reuteri 100-23]
          Length = 1260

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/621 (9%), Positives = 172/621 (27%), Gaps = 52/621 (8%)

Query: 156 IDIIETEEKKWEDLHALKNEKYGM-------WWLLAADFLKIASKYWTERLVELNASSPV 208
           ++ ++      +DL  + +             WL     ++I    + ERL +    +  
Sbjct: 137 LEELKNANITADDLTDIISRMKSANDPAANQAWLAKMHDVEIIYHAYEERLRDRYIGNSE 196

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
            Y+  +  +  +   +  K    I           +++  +  +     +   LD   P 
Sbjct: 197 LYRQLV--SHLQKSPEVAKMHFFIDRFAQFTANEQQVVDALITNAASTTISLTLDRGYPD 254

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
                    +                   +L  F  + +++VK L NV+     R  V +
Sbjct: 255 QNH-----PNPQELPPKNNLFYSSAMQFHRLWKFGQMHQKEVKVLQNVAFATTPR--VDA 307

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---EN 385
           +            ++ +         C  ++  +   N   E  ++A  +R  +      
Sbjct: 308 ELQQVDSYFKRYASEPIGPGEREELSCPPNLQFMTTTNRMTELNNVATQIRQLVASGKYR 367

Query: 386 KKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
            +   +++   +  + +         I +       +      ++LT+LL    +     
Sbjct: 368 YRDFLILSRHLDGYQTMIEPVFAAHDIPVFNDHERLMDNHPLVTLLTTLLELPQRGYRTA 427

Query: 445 AIATLVKH----PLAK----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I  L+K     P        G  +   +        +       +    +    +    
Sbjct: 428 DIIQLLKTWLLVPRTGTGDLMGLSDFQAAVFATENWCLKQAIEGKNAWTTNDPEKIKQLW 487

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL-SISDWTK 555
                N   P ++    ++  +   L+ D +   + P+        +      ++  +  
Sbjct: 488 QAPGTNLTDPKYEQSRLKKLNDQLALVKDFVANHLLPVFDQFKQAQTGQELATALYQFLA 547

Query: 556 LTVTCLQNVCLDEHRKLPNLW----FEEEGKTLSSLFSKIIETGSCIKAN------AIEW 605
           +     +     +++   +L      ++   T   +  + +E     +          ++
Sbjct: 548 VMGVTDRLYAWQQYQSTRDLDLARQPQQVWTTFCQILQEYVEILGQQELRNGTSEVLADF 607

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            +++                  + +  T   +  N   + + G  + V P+    +  L+
Sbjct: 608 SELLQAGFAAAQYSQIPATLDQVVVSETGIVQSENRKVVFMIGSTDDVMPEMQESDSLLT 667

Query: 666 RVMQSDLNLKTAEKY-----------IGQAAHDFEMANGTRHLIYTRS--LRENNIPTIA 712
              +  L+    E +           I +    +      +  +   +     ++     
Sbjct: 668 DQDKDILSAYLDEDFQYLPGTAIDQLIDEPFVHYTGFMNAKEQLIFSAPQTDSDDKELSI 727

Query: 713 SRWLQRLLVLGGTDFFDNLKK 733
           S ++  +    G    +    
Sbjct: 728 SPYMHDMARYFGQPVREYPLA 748



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 75/589 (12%), Positives = 151/589 (25%), Gaps = 96/589 (16%)

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL-------LVDHILQCITPLVTYK 538
             +L + +   +A       +  WQ   S  D +LA             + + +  L   +
Sbjct: 536  QELATALYQFLAVMGVTDRLYAWQQYQSTRDLDLARQPQQVWTTFCQILQEYVEILGQQE 595

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                ++      S+  +      Q   +        +      ++ +     +I +   +
Sbjct: 596  LRNGTSEVLADFSELLQAGFAAAQYSQIPATLDQVVVSETGIVQSENRKVVFMIGSTDDV 655

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG---LNEGVWP 655
                 E   ++T     + +          ++ GT   +L++   +   G     E +  
Sbjct: 656  MPEMQESDSLLTD--QDKDILSAYLDEDFQYLPGTAIDQLIDEPFVHYTGFMNAKEQLIF 713

Query: 656  KNTAKNPF--------LSRVMQSDLNLKTAEKYIGQA------AHDFEMANGT---RHLI 698
                 +              M         E  +  +      A DF  A      R + 
Sbjct: 714  SAPQTDSDDKELSISPYMHDMARYFGQPVREYPLATSKAGQENAIDFVSAPLATINRLVE 773

Query: 699  YTRSLRENNI------PTIASRW------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
             +R +R+         P +   W      L +L           ++  G         + 
Sbjct: 774  VSRQIRDEQGVGIDRQPVMPVGWQTVAESLVKLAKQWQQSADAKVQTEGILLGQRLSLVA 833

Query: 747  YT-------------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                             Q  Y R  P      +    S S+++    + Y  + +  L+L
Sbjct: 834  AGFHYQNKIDSLGNKLAQALYLRTAPG-DERGRVLYASISQLQDFYINQYEYFLKYGLRL 892

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-------PEINHLMKQIIDSHF--- 843
                           GT FH  +   +      N         +      Q+ID      
Sbjct: 893  QKRDEL--TLSNDRIGTFFHKAMETFVTTIRENNLSFADLAHQDNQMQRDQLIDHALVTA 950

Query: 844  -------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS--SIEKIFVNIPA------- 887
                    +                 I  + L    +       + +   +         
Sbjct: 951  QENQPTLLRLINSSAQAQFQYQQLTAIVKTMLITLCRQAEYTGSQPVKTEVQFGRIGNQQ 1010

Query: 888  KMAIESIG--------IHLTGFADRIDLLK---SGFVDITDYKTG-DNPKKETAQKLIDP 935
               + S+         I+L G  DRID LK     F+ + DYK+        +A   +  
Sbjct: 1011 SGNLGSLDYPLKDNHHIYLRGRIDRIDNLKQGNDNFLTVVDYKSSNHLFDLTSAYYGLSL 1070

Query: 936  QLSLEAAALKAGSFS-QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
            QL      L+A     +    ++A   Y+RL                  
Sbjct: 1071 QLLTYLNGLQANLTELETSNSRLAGALYLRLNNPTIKATELKKSSLDDL 1119


>gi|3024353|sp|P56255|PCRA_BACST RecName: Full=ATP-dependent DNA helicase pcrA
 gi|4930230|pdb|3PJR|A Chain A, Helicase Substrate Complex
 gi|15988533|pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp
 gi|157833507|pdb|1PJR|A Chain A, Structure Of Dna Helicase
          Length = 724

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 78/727 (10%), Positives = 192/727 (26%), Gaps = 110/727 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           ++     T +A +E+R     + G  +       I +   +       D+     +N   
Sbjct: 58  NILAITFTNKAAREMRERVQSLLGGAAEDVW---ISTFHSMCVRILRRDI-DRIGINRNF 113

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           S +    +L+ +  I + K  D  K                     + +   I   + E 
Sbjct: 114 SILDPTDQLSVMKTILKEKNIDPKKFEP------------------RTILGTISAAKNEL 155

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE--- 220
              E        +   ++      +    + + +RL+  ++       +  ++       
Sbjct: 156 LPPEQFAK----RASTYYEKV---VSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPD 208

Query: 221 --HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
             H  +     I I     +  A   L+  +A       +    D       W     ++
Sbjct: 209 VLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQN--ICAVGDADQSIYRWRGADIQN 266

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       +P   +  L       +  ++    V      R               
Sbjct: 267 ILSFE-----RDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNR------------KPK 309

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD 395
              T+  E K          +   EA NE +EA  +A  +R ++   +   +  A++   
Sbjct: 310 RIWTENPEGKP---------ILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRT 360

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L +  I   I  G+          + + L  I   +D +++  ++  P  
Sbjct: 361 NAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVP-- 418

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                                           + +  +D++     +  +  +++    E
Sbjct: 419 -----------------------------KRGIGASTIDKLVRYAADHELSLFEALGELE 449

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
              L       +    + L  +   +        + +    +                 L
Sbjct: 450 MIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQSRL 509

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +E  +++  F  + +  S I          +   +D      +  +   + ++    
Sbjct: 510 ENLDEFLSVTKHFENVSDDKSLIAFLTDLA---LISDLDELDGTEQAAEGDAVMLMTLHA 566

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + L G+ EG++P N +         +  L      +   +            
Sbjct: 567 AKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEEELVLTSAQM---- 622

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                R+L  N      SR+L  +                +  +   +            
Sbjct: 623 -----RTLFGNIQMDPPSRFLNEIPAHLLETASRRQAGASRPAVSRPQASGAVGSWKVGD 677

Query: 756 RPKPFPP 762
           R      
Sbjct: 678 RANHRKW 684


>gi|258545690|ref|ZP_05705924.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
 gi|258519060|gb|EEV87919.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
          Length = 666

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 81/699 (11%), Positives = 176/699 (25%), Gaps = 123/699 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A +E+      + GK++  L  I +   +  +    + L +         ++R 
Sbjct: 58  LTFTNKAAREMGERVRALLGKEARGL-HISTFHRLGLDILQKEHLAA--------GLRRN 108

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
             +                D    + L   +S      + + L   I   +         
Sbjct: 109 FTVF---------------DARDGATLVKELSKQEDEAMVRQLQAQISAYKNANISAAAA 153

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----K 224
             L  ++       A         ++ +RL   NA          +    EH       +
Sbjct: 154 KTLAQDE-------AQVLAAHIYHHYDQRLRAYNAVDFDDLIALPLALLREHEAVRERWQ 206

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                +++     +      L+  +A    GA      D       W     ++      
Sbjct: 207 HRVRYLLVDEYQDTNDCQYALLQLLAGA--GAAFTAVGDDDQSIYAWRGARPENIAHLH- 263

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                 +P     KL                             +     +T    N  +
Sbjct: 264 ----EDYPALKTVKL---------------------EQNYRCHQQILAAANTLIANNPHV 298

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIAL---RMSLDENKKKSALITADRNLARR 401
           +E K+ +       V +I A ++  EA  I   +   ++  ++     A++      AR 
Sbjct: 299 VEKKLWSELTAGEGVHVICARSDEAEAEQIVQDIYLRKIRDNKKNSDFAILYRSNFQART 358

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            + +L    +   IS G           L   L  I   +D  A   +V  P        
Sbjct: 359 FEQQLRELSLPYKISGGTSFFEHSEIRDLLGYLRLINNPDDDAAFLRVVNTP-------- 410

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                             K       L  L             V   +   + E      
Sbjct: 411 ------------------KREIGAATLAKLGEYAARRHV-ALSVAAAEVGFAHEIGGKPY 451

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             +   +Q +  +     ++        + +  +      +        ++      +  
Sbjct: 452 QNLQTFIQWLQTMQRDGESEPPLEILNRVINDIEYDDYLFELHKAPAKIEVRQKRISQLR 511

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
             ++ L  +  ET   +    +  +DI+ R    E           + ++    ++ L F
Sbjct: 512 AWIAKLQEERFETLDGL-MQHLTLLDILDRQEQEE---------DAIQLMTLHSAKGLEF 561

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYT 700
             + + G  E + P   + +       +  L               +      +  L+ +
Sbjct: 562 PVVYIAGCEEELLPHRNSMDNDDGEREERRL--------------LYVGMTRAKETLLLS 607

Query: 701 RSLRENNIP----TIASRWLQRLLVLGGTDFFDNLKKRG 735
            +           T  SR+L  L   G            
Sbjct: 608 YAKARRRGAELQTTEPSRFLDELPADGVQWHDGRTPPDP 646


>gi|21220149|ref|NP_625928.1| hypothetical protein SCO1653 [Streptomyces coelicolor A3(2)]
 gi|6119695|emb|CAB59506.1| conserved hypothetical protein SCI41.36 [Streptomyces coelicolor
            A3(2)]
          Length = 284

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 82/271 (30%), Gaps = 32/271 (11%)

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            +   P + S S     +  P     R I +L          +   RGTL H ++  L   
Sbjct: 1    MATAPASLSPSRAGDFMQCPLLYRFRVIDRLPEK-----PSEAATRGTLVHAVLERLFDA 55

Query: 823  RINKNTPEINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHEE 872
               + T      +         +          ++        W     ++   +   E 
Sbjct: 56   PAAERTAPTARALVPGQWDRLRESRPEVGELFADDPEGERLAQWLAEAERLVERWFSLE- 114

Query: 873  KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
               S +E     +  +  ++S G+ L G  DR+D+  +G V I DYKTG  P+     + 
Sbjct: 115  -DPSRLEPAERELFVEAELDS-GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP-QYAEG 171

Query: 933  IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
               Q+   A  +       +       L  + L     +                E+  +
Sbjct: 172  ALFQMKFYALVVWR-----LKKVVPRRLQLVYLGSGDVLTYDPVLAD-------LERVER 219

Query: 993  NLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
             L+ +   ++   +      R ++      +
Sbjct: 220  KLLALWEAIRLATETGDWRPRPTK-LCGWCD 249


>gi|260429599|ref|ZP_05783576.1| double-strand break repair helicase AddA [Citreicella sp. SE45]
 gi|260420222|gb|EEX13475.1| double-strand break repair helicase AddA [Citreicella sp. SE45]
          Length = 1118

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 85/884 (9%), Positives = 208/884 (23%), Gaps = 118/884 (13%)

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIW-LAKNLADIIDIIETEEKKWEDLHALKN 174
            +         ++      S          A+  +A+ L  + + +E   +    L A++ 
Sbjct: 263  LDSLVALEAALLTQKGTRSSRVPTKDTRAALGPMAERLEQLAERVEAARETRLALEAVQR 322

Query: 175  EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE--------HLMKGT 226
            E           F +     +                       ++        + + G 
Sbjct: 323  EL------ALHRFAQAFLPAYETEKQRRGWLDFDDLVTRARDLLSDERVAEWVLYRLDGG 376

Query: 227  KGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEK 277
               I++  +  + P   +++  +A                +    D       +     +
Sbjct: 377  IDHILVDEAQDTSPVQWQVIERLAHEFTSGEGARSDVRRTIFVVGDKKQSIYSFQGADPR 436

Query: 278  STNITSSNTTYSTH----------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +                      +YS       L +  ++       S     +    
Sbjct: 437  EFDRMCDEFAERLQRTEAPLSRMMLEYSFRSAEPILRLV-DNCFEGREASGFSEDQRHRA 495

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--------- 378
             KS +P       + +  ++   + +       + E  +    A  +A  +         
Sbjct: 496  FKSAMPGRVDLWPHVETNKDSAEDGEWFEPVDRVGEQHHAVILANRVAGFIGRTIGTPLP 555

Query: 379  ---------RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
                     R           L+     L   +     + G+ I  +  + + + L    
Sbjct: 556  EEIGHSGEYRTRPAHAGDFLILVRGRGTLFSEIIRACKQRGLPIAGADRLKVMSELAVKD 615

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
            + +LL  +    D +++AT ++ PL   G  + +                + + D     
Sbjct: 616  IGALLAFLATPEDDLSLATALRSPLFGLGEQDLFTLAHPRK--GYLWAELRKNRDTYPQV 673

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
              VLD + ++ +         R+       A LL     +    +        +      
Sbjct: 674  MAVLDDLRSETDFLRPYDLIERILTRHGGRARLLGRLGEEAEDGINALLGQALAYEQT-- 731

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
                                      W + +   +             +  +  + ++  
Sbjct: 732  ----------------EVPSLTGFLEWMQTDDLEIKRAPDSAGSRIRVMTVHGAKGLEAP 775

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
              ++          + S L              T+   G +               RV  
Sbjct: 776  IVILPDCARPNTQIRESLLDGATG---------TVWKAGADTQ------------PRVQT 814

Query: 670  SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR-----WLQRLLVLGG 724
              L          +    +         +   +  E      A        ++R      
Sbjct: 815  EALEAAKEADQQERDRLLYVALTRAEKWLVVAAAGELGKDGNAWYDKVKIGMERSGAEAA 874

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
               + +        L               K        +   +     E       P  
Sbjct: 875  VFDYGDWGSGEGLRLGLADWTGLPHVTVPPKEVAQVTLPDLFRQRAVVPEPAPGAVSPSG 934

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                   K        +  +   RGT  H ++  L     ++    + H++   I     
Sbjct: 935  ---LGGAKALGGEDGDETEEAMLRGTALHLLLEHLSALPADRRADAVPHVL--AIAEELP 989

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
             E               + + + L           +    +P    I  +G  + G  DR
Sbjct: 990  AETDS----------LVQEALAVLATLPLAPFFAPETLAEVPISAEIAPVG-RIHGIIDR 1038

Query: 905  IDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
            + +     + + D+K+        E   + +  Q+   AAAL+ 
Sbjct: 1039 LIVTPEKVIAV-DFKSNRTVPATPEQTPEGLLRQMGAYAAALQQ 1081


>gi|312862860|ref|ZP_07723100.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis F0396]
 gi|311101720|gb|EFQ59923.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis F0396]
          Length = 769

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 75/690 (10%), Positives = 195/690 (28%), Gaps = 120/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R     +    +T   +I +   +       +       N     
Sbjct: 54  NILAITFTNKAAREMRER--AMALNPATSETLIATFHSMCVRILRRE-ADHIGYNRNFTI 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++             L P+       +    I  AKN  D++D +  E
Sbjct: 111 VDPGEQRTLMKRILKTLN---------LDPKKW--NERAILGTISNAKN--DLLDEVAYE 157

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            +  +    +                    K + E L    A       +  +R   ++ 
Sbjct: 158 HQAGDMYTQIV---------------AKCYKSYQEELRRSEAMDFDDLIMMTLRLFDKNP 202

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  +  L +     ++ ++    V      R              
Sbjct: 261 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANEVIKNNRNRRPK----------- 304

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
                     K+         +    A++ER+EA+ +A  +   + E     K  A++  
Sbjct: 305 ----------KLWTQNDDGEQIVYYRANDERDEAVFVASTIDNIVREEGKNFKDFAVLYR 354

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + S LN I   +D ++   +V  P 
Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISFERVVNEP- 413

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                 +       +  +++   ++  +  + +          +
Sbjct: 414 ----------------------KRGVGPGTLEKIRNFAYEQNMSLLDASANIMLSPIKGK 451

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                       +      ++  +   +      ++      +                 
Sbjct: 452 A--------AQGVYDFANTILNLRDQLDGLSITETVEAILDKSGYLDALSMQQTLESQAR 503

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  +++  F +    G+  +         +  L           +++ + ++   
Sbjct: 504 IENIEEFMSVTKNFDETNTDGTEDETGIDRLGRFLNDLALIADTDDGDMEAAEVTLMTLH 563

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P + +               +  E+   +    +      
Sbjct: 564 AAKGLEFPVVFLIGMEEGVFPLSRSS--------------EDPEELEEERRLAYVGITRA 609

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRL 719
             +++     TR+L         SR+L+ +
Sbjct: 610 EEILFLTNANTRTLFGKTSYNRPSRFLREI 639


>gi|319442768|ref|ZP_07991924.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile
           DSM 44702]
          Length = 931

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 83/734 (11%), Positives = 189/734 (25%), Gaps = 90/734 (12%)

Query: 30  LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEE 87
           L     +   + +    +     T +A  E+R    ++ G  +    L    +   +   
Sbjct: 145 LTRRVAWLLAHGVAPWQILAITFTNKAAAEMRERVTDLVGPVAERMWL---STFHSLCVR 201

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
              A+  L       +  +     +       +  +  ++KD   +     P +  + I 
Sbjct: 202 ILRANAQL-------IEGLNTNFTIYDSDDQ-KRLITMVLKDHDCDLKEFAPRAVLSVIS 253

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
                 +  + ++      E L   + +       +A        + +  RL E NA   
Sbjct: 254 ------NWKNELQG---PAEALKETQEDGNRHREQIAL-----VYRDYQARLRESNAVDF 299

Query: 208 VGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMST-VANHPNGAIVLPG 261
                 ++     +       +     +++     +  A   L+ST V   P+   +   
Sbjct: 300 DDLIGEVVWMLQANPAVADHYRRRFRHVLVDEYQDTNHAQYVLVSTLVGEGPDAGELCVV 359

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            D       +   T ++      +                 L+      + + + +N + 
Sbjct: 360 GDADQSIYAFRGATIRNIEEFERDYP---------HAETILLEQNYRSTQNILSAANAVI 410

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            R+    +  L  D+ D                    +    ADNE +EA  IA  +   
Sbjct: 411 ARNQGRREKKLWTDSGDGPL-----------------IGGYVADNEHDEARFIAQTIDQL 453

Query: 382 LDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
           +D+        A++    N +R V+  L R G+   +  G           + + L  + 
Sbjct: 454 VDDGDATYGDIAVMYRTNNSSRVVEDVLVRSGLPYKVVGGTRFYERREIRDVVAYLKVLD 513

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY--------DIMDLKS 490
              D M +  ++  P    G               ++  G   +               +
Sbjct: 514 NAEDTMGLRRIINTPRRGIGDRAISQVSVHAENMDLSFAGGLRAAAAGEVPGLSSRGRNA 573

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL--------VTYKTNKN 542
           +             +P      S+        L   I   +                + +
Sbjct: 574 IAGFLELMDGLREDLPGHVMEASDGSSLEIPDLGAVIRDVLDRTGYTTELEKSNDPQDGS 633

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPN---LWFEEEGKTLSSLFSKIIETGSCIK 599
                  +            N+   E            +E G    +  +          
Sbjct: 634 RLDNLHELVSVGHEFSQEAANLAAYEAMPDTAGGTAAQQESGAASDADAAADAVLSEGEP 693

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           A       +    +  +  +   E+   + ++    ++ L F  + L G  +G +P   A
Sbjct: 694 APGSLQAFLERVSLVADADQIPGEEQELITLMTLHTAKGLEFPVVFLTGWEDGQFPHQRA 753

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
                    +  L      +   +       A        TRS          SR+L  +
Sbjct: 754 LGDPTELSEERRLAYVGITR--ARQRLYLSRA-------VTRSSWGTPANNPPSRFLDEI 804

Query: 720 LVLGGTDFFDNLKK 733
                    +    
Sbjct: 805 PGELIDWIREEPTP 818


>gi|182417614|ref|ZP_02948935.1| ATP-dependent nuclease subunit B [Clostridium butyricum 5521]
 gi|237669573|ref|ZP_04529553.1| ATP-dependent nuclease subunit B [Clostridium butyricum E4 str. BoNT
            E BL5262]
 gi|182378533|gb|EDT76063.1| ATP-dependent nuclease subunit B [Clostridium butyricum 5521]
 gi|237655017|gb|EEP52577.1| ATP-dependent nuclease subunit B [Clostridium butyricum E4 str. BoNT
            E BL5262]
          Length = 1155

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 69/227 (30%), Gaps = 30/227 (13%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL---------- 819
            +S S +++    P++ + +  LK         +    D G+  H+I+             
Sbjct: 779  FSVSRLEKYAECPFSYFVQYGLKAKNRK--IYEFTPPDLGSFVHDILDLFTNRVKKEGIL 836

Query: 820  IKKRINKNTPEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHS--FLEHEEKIQS 876
              +  N+   +I   +  I +                    F ++      +  E+  + 
Sbjct: 837  WSELNNERCKDIVSNLIDIRLSEQTNSILNSSKRFKYLSQRFKRVISKSVTVMAEQIGKG 896

Query: 877  SIEKIFVNIPAK---------MAI-ESIGIHLTGFADRIDLLK-SGFV--DITDYKTGDN 923
              E                  + + +   ++L G  DRID L   G +   I DYKTG  
Sbjct: 897  EFEVFKTEFDFGNYKTGEAVMLNLQDDEKVYLQGRIDRIDTLDLDGQIYIRIIDYKTGAK 956

Query: 924  P-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQK 968
                      +  QL +   A +K   +          + Y ++   
Sbjct: 957  KFDLNELYYGLQMQLLVYLDAIIKNSKYILEKQVIPGAVLYFKVDDP 1003


>gi|254244903|ref|ZP_04938225.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa 2192]
 gi|126198281|gb|EAZ62344.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa 2192]
          Length = 1171

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 96/866 (11%), Positives = 227/866 (26%), Gaps = 68/866 (7%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L    V   R  PL PL    V ++  +    Q L+    E   +       I +  +V 
Sbjct: 25  LRDLAVSWMRRYPLAPLESERVLVH--SNGIAQWLKLALAEDPREDGGGGGGIAAALEVQ 82

Query: 86  ----EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                       +L     P VS + +     RL+ +    L            L+    
Sbjct: 83  LPAQFLWQAYRAVLGRESIPEVSELDKAPLTWRLMRLLPGLLERPEFRTLQRF-LADDAD 141

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLAADFLKIASKYWTER 198
                 LA+ LAD+ D  +     W D  +   ++               +  ++ W   
Sbjct: 142 LRKRHQLAERLADLFDQYQVYRGDWLDDWSQGRDQLRTANGQARPLGADERWQAELWRAL 201

Query: 199 LVELNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANH 252
           L ++ A S    +  + R   E L       +     +++ G +     T   ++ +A  
Sbjct: 202 LADVGADSLARSRSGVHRRFIEALRSASAAPRALPRRVVVFGISSMPAQTLEALAALARF 261

Query: 253 PNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
               + +     H    I             ++      ++       Q++   L  +  
Sbjct: 262 SQVLLCVHNPCRHHWADIVADKDLLRHEYRRQQRRVGVPADLDEDRQHQHAQPLLAAWGK 321

Query: 305 IKREDVKRLGNVSNEMYGRS------------------MVISKSFLPPDTSDMRNTDILE 346
             R+ +  L +  +    R+                    +               +  E
Sbjct: 322 QGRDYINLLDSYDDPDSYRNLFGEVNGGRIDLFSEEAPHGLLGQLQDDILELRPLAETRE 381

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRV 402
           +  P   +  + +    A + + E   +   L    + +     +   ++  D N     
Sbjct: 382 HWPPVAPRSDASIRFHVAHSAQREVEILHDQLLARFNADPSLKPRDVIVMVPDINAYAPH 441

Query: 403 KLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +        +  I   ++             L  LL           I  L+  P  
Sbjct: 442 IEAVFGQVPRDDQRFIPYTLADQGQRGREPLLIALEHLLKLPDSRFAVSEILDLLDVPAL 501

Query: 456 KFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVP 506
           +  F   E  L+     +E   +R   ++     L        +     +        V 
Sbjct: 502 RRRFGVDEADLATLHRWIEGAGVRWGLDAAQRERLGLPAGLEGNSWRFGLRRMLLGYAVG 561

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              +    +  +    L   +   +  L+       +     +        +  L  V  
Sbjct: 562 EGAALQGIQPYDEVGGLDAALAGPLAVLLERLEVAYAELAEPATPAQWGERLQALLTVFF 621

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
           + H +   L   +  + L                      +     +D   +  +    +
Sbjct: 622 EAHDERDELLLTQLLQLLERWQEHCACAAFAEPLPISVIREAWLGGLDQGGLNQRFLAGA 681

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            +     +  R + F  + L G+N+G +P+  +   F           ++  +       
Sbjct: 682 -VSFCTLMPMRAIPFRLVCLLGMNDGDYPRQQSPLDFDLMRNDYRPGDRSRREDDRYL-L 739

Query: 687 DFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
              + +    L  +   R   +N     S  + +L       +  +    G+  L    +
Sbjct: 740 LEALLSAREQLYVSWVGRSIRDNGERPPSVLIGQLRDHLAAGWRLDPDGDGEALLRALTQ 799

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                 QP  +R     P +     ++++   + ++    +              +    
Sbjct: 800 --EHPLQPFSRRYFHDAPEQGVDGLFTYAREWREVHREDEIGVPDAEAPLAPLELEGALG 857

Query: 805 RTDRGTLFHNIITELIKKRINKNTPE 830
                    N +    ++R+     +
Sbjct: 858 LRALAEFLANPVNAFFQQRLKVRFDD 883


>gi|152968347|ref|YP_001364131.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
 gi|151362864|gb|ABS05867.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
          Length = 1123

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 74/841 (8%), Positives = 200/841 (23%), Gaps = 75/841 (8%)

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
            A+++D +   ++  EDL +                  +A       L  L+    +    
Sbjct: 282  AEVVDALAHAQRAVEDLRSAVGAATTKTLTARVQDWLLAEADRRRELGALSFHDLLVLAR 341

Query: 213  ALMRAEAEHLMKGTKG--PIIIAGSTGSIPATARLMSTVANHPNGA-------------I 257
             L+R   +   +       ++I     + P    +   +A                    
Sbjct: 342  DLLRRNRDVRERLHAQWPVLLIDEFQDTDPLQVEIACLLAGDCGEEPPEQWQEIPVAPGR 401

Query: 258  VLPGLDCHIPTAIWNTITEKSTNITSS-NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            +    D       +      +       +    T    +   +   L+      + L   
Sbjct: 402  LFFVGDAKQSIYRFRGADVATFTAVGDLHERGRTGLAVNFRSVPGVLEAANHAFRTLIGA 461

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                      +  +             +L            D+      +    A +   
Sbjct: 462  DPAAGIAYADLHPARDGGADGVDVPVLLLGGDRDVPAGALRDLEAEHVADVIARAKAEGW 521

Query: 377  ALRMSLDEN------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
             +  S                 +   ++   R     ++  L    I   + +   + +T
Sbjct: 522  PVEASTRHPDGTSTRGQRPAQYRDVTVLLPTRTPLASIERALEGRDIPYRVESRSLVWST 581

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                 + +LL A+    D +A+   ++ P       +    RA      +     +   +
Sbjct: 582  DAVRAVLALLQAVDSPADQVALLAALRQPGLACSDVDLVGWRAAGGRWSIHAAVPEGIDE 641

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
               + + +                +    +        LV+ +++ +  +    + +   
Sbjct: 642  QHPVAAALRTL-------------RRWHEQRWWVPVNQLVEEVVRELRLVELTASQRRPR 688

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHR---KLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                 +                              +      + +     +    +  +
Sbjct: 689  DHWRRLRFVVDQAREWCDRGGSGLTGFLSWTVRQQQDSADLVETVVPEPDDDAVRILTVH 748

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
              + ++    ++ G  +       +T+             D L + G  +    +     
Sbjct: 749  GSKGLEFPVTVVAG--LNGSGRDDATVLWAPDGPLVRFRADVLEMPGWRQASQDEKAESE 806

Query: 662  PFLSRVMQSDLNL----------KTAEKYIGQAAHDFEMANGTRHLIYTRSL---RENNI 708
                R++   L                +  G  A           L    S    +    
Sbjct: 807  QEAIRLLYVALTRAQDHLVVGCYHKPSRTGGSRAQKLWELLADSGLARCESEPRAQRAAQ 866

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
             T  +   Q L+         +L  R +        L                       
Sbjct: 867  GTAPATPFQVLVPEDEGRTARDLPDRAEFLEQRAALLAALHAAVATSATAVRQATAVPTS 926

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S  E     +D     A     +       +       GT  H ++     +  ++  
Sbjct: 927  GPSREEEPAKEHDAPDTTAGDEAGVRPPRRTTRRRGAA-VGTAVHRVLELADLRSPSR-- 983

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                  ++++ ++    E +P     +      +   +      +  +   + +  +   
Sbjct: 984  ----EEVRRLAEAVCAAEQVPDSTGEVE----QRAWSALTAPVVRDAADGGRTWREVY-- 1033

Query: 889  MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA---QKLIDPQLSLEAAALK 945
            + ++    +L G+ D +    +G + + DYKT            ++    QL   A AL 
Sbjct: 1034 LVVDDGQRYLEGYVDLLAETSTGELVVVDYKTDRVRSAADVAAKEQHYAGQLDAYADALA 1093

Query: 946  A 946
             
Sbjct: 1094 R 1094


>gi|254523246|ref|ZP_05135301.1| exodeoxyribonuclease V, gamma subunit [Stenotrophomonas sp. SKA14]
 gi|219720837|gb|EED39362.1| exodeoxyribonuclease V, gamma subunit [Stenotrophomonas sp. SKA14]
          Length = 1114

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 111/977 (11%), Positives = 236/977 (24%), Gaps = 123/977 (12%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            +L   L  N R       LLA   + +P     + L++      G  + +     + G+
Sbjct: 17  DVLAALLARNVRAPVAGQPLLAPEVVLIPQVAMRRWLQATLAAEFGVAANL--EFLTPGE 74

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            V     A++    +         R      L    R+        +             
Sbjct: 75  FVARALKANVSGEQDDLDAAGLHWR------LYQALRDPALLAQPPMRALQSYLAGGDAL 128

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               LA  LA + +  +   + W            + W   AD     +  W        
Sbjct: 129 KPWALAGELASVFEKYQAWRRDW-----------LLRWAAGADPADPQAILWRTI--TRG 175

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                      +           KG    +    +    P   R+M+T A        +P
Sbjct: 176 HDYRARRIQEYLDRFEGAGQPLPKGLPLRMSAFATLNISPDVLRVMATQARVGELHFYMP 235

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV---------- 310
                    +        T                  +LL+       D           
Sbjct: 236 TPVQSYWGDLQTLAERLRTGAPDPFGEA-----AGENRLLEAWGAAGRDFMAVLGSYEVV 290

Query: 311 ----------KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                         +    +    +  S           R           ++     + 
Sbjct: 291 HPAGEIAAYSDPEEDTRPALDEGGLSDSLLHRLQRDLFHRRALPSGELRDGLRSDDPSLQ 350

Query: 361 LIEADNEREEAISIAIALRMSLDENK-------KKSALITADRNLARRVKLEL------T 407
           +        E   +   LR  L + +       ++ A++  D +        +       
Sbjct: 351 VHACHTRLRELQVLHDQLRSLLQDARFDPPLQAREIAVLAPDIDPYVPYLEAVFGGRSGE 410

Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG--FPEKYLS 465
              I   ++   PL+    + +   LL           +  L+                 
Sbjct: 411 EEHIPYALADSSPLAGEPLADVFVHLLGLPVSRFGLNEVLDLLASAPLAEAAGLEAVDFD 470

Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
           R    L+    R   ++      ++   D    Q     +    +  SE D       ++
Sbjct: 471 RLHGWLQQAGARWGLDAKHRDQHQAPADDAYTWQFALDRLVLGHATGSEADLAGVAPWIE 530

Query: 526 HILQCITPLVTYKTN-------KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                +  L             +      L+ + W +  ++ L  +         +    
Sbjct: 531 LEGGALEALDRLLRLLRVLAVYQRRLGELLTPAQWRQRLLSLLDALLPTAPSSPNSQRAL 590

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E  + L + F++        +    E +        GE        +  +     +  RL
Sbjct: 591 ERLRKLLNQFAEDAAKAGFNEGVPPEVVRAHFAGALGEADTRAPLLTGGISFGRMVPMRL 650

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPF--LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           L F  + + GLN+G +P+         L+  + +                 F        
Sbjct: 651 LPFRVICVLGLNDGDFPRRDPAAGLNQLTAELDTPRRRPGDRSTREDDRFLFLQLFAAAQ 710

Query: 697 ----LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL--------------------- 731
               L Y  +   +      S  +  L+        D                       
Sbjct: 711 EVFYLSYLGADPRDGSVREPSVLVSELIDAAAAYHLDPEAAVRDFTVRHALQPFSPAAFG 770

Query: 732 ---KKRGQCYLDWTRKLDYTTKQ-----PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
               +R      W       T Q     P +  P P P  +A     +   +++ + DP 
Sbjct: 771 DGDPRRFSYRRQWHPAAGRLTGQRGGLLPWFDAPLPPPLDDAVENEVALDTLRRFLCDPA 830

Query: 784 AVYARRILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
             +  + L L      ++  D      + RG    ++   +++  +N ++  +   ++  
Sbjct: 831 GQFLAQSLGLRLADEVEEVDDLEPLVLSSRGPEKRSVQAAVVRATLNGDSEPLYPRLR-- 888

Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                    L      + +      + + L   +       +  V        +  G+ L
Sbjct: 889 ARGLLPSGALGERQFEVEQLKTRPYASALLGWMQGEPLESRRYEV--------DIDGVRL 940

Query: 899 TGFADRIDLLKSGFVDI 915
            G     D    G V +
Sbjct: 941 HGRV--TDRHPEGLVRL 955


>gi|257054559|ref|YP_003132391.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM
           43017]
 gi|256584431|gb|ACU95564.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM
           43017]
          Length = 817

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 67/691 (9%), Positives = 177/691 (25%), Gaps = 82/691 (11%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+R   +++ G ++  +  + +   +                  V  ++R 
Sbjct: 75  ITFTNKAAAEMRDRVVDLVGGRAGAM-WVSTFHSMC-----------------VRLLRRE 116

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            +   L   +     D  + L       L + P      A+ LA+ +  ++ E    +  
Sbjct: 117 AKTLELTSNFSIYDADDSRRLMALVGRDLELDPKRYS--ARALANHVSNLKNELIDPDAA 174

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----K 224
                  +      A        + +  RL + NA          +             +
Sbjct: 175 ADAAANDFERRAAEA-------YREYQNRLAQANALDFDDLIARTVELFQAFPDVAEHYR 227

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP------GLDCHIPTAIWNTITEKS 278
                +++     +  A   L+  +         LP        D       +   T ++
Sbjct: 228 RRFRHVLVDEYQDTNHAQYTLIRELVGTGPTESGLPPSELCVVGDADQSIYAFRGATIRN 287

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +   +             L+      + + + +N +  R+              
Sbjct: 288 IEEFERDFPDARTIL---------LEQNYRSTQTILSAANAVISRN-------------- 324

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITAD 395
                  E ++         +    AD+E +EA  +A    AL    +      A+    
Sbjct: 325 ---PGRREKRLWTDAGQGERIVGYVADSEHDEAAFVAEEIDALVDRGEAKYSDVAVFYRT 381

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            N +R  +    R G+   +  G+            + L  +    D +++  ++  P  
Sbjct: 382 NNQSRVFEEIFIRLGLPYRVVGGVRFYERKEVKDALAYLRVLANPEDTVSLRRILNVPKR 441

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMD---LKSLVLDRIATQKNNTHVPHWQSRL 512
             G   + +       E ++               L       I                
Sbjct: 442 GIGERAEAVVATHAERERISFASALRDAVAGRIPLLNPRSQKAITAFVELIDGLRELVDE 501

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
             +  ++   ++D         +    +        ++ +   +     +          
Sbjct: 502 GTDVADVLEAVLDRTGYRAE--LEGSDDPQDASRLENLDELVTVAREFTEFARSVGEDTG 559

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
            +   +       +  ++     + ++       D  +          + ++   + ++ 
Sbjct: 560 TSEDTDVATDFEDADVAEPGSLSAFLE-RVSLVADADSVPSPDGEGADEADEDGVVTLMT 618

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L +  +   G  +GV+P   A                  E+ +   A       
Sbjct: 619 VHTAKGLEYPVVFCTGWEDGVFPHLRALGEPKE---------LAEERRLAYVAITRAQRR 669

Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
                   R+     +   ASR+L  +    
Sbjct: 670 LYVSRALVRNAWGQPMSNPASRFLDEIPAEL 700


>gi|163797153|ref|ZP_02191108.1| ATP-dependent exoDNAse beta subunit [alpha proteobacterium BAL199]
 gi|159177669|gb|EDP62222.1| ATP-dependent exoDNAse beta subunit [alpha proteobacterium BAL199]
          Length = 1152

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 86/906 (9%), Positives = 200/906 (22%), Gaps = 119/906 (13%)

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA-DIIDIIE 160
             +    R                   +              A    LA+     +I+   
Sbjct: 281  ALGEPDRRAAAWEAYRGVFLTAEGQPRKTLATKAALAFDPAAGDTLLAEAERLSVIEETR 340

Query: 161  TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM----- 215
                  E   AL            A  +  A +    R  EL+    V    +L+     
Sbjct: 341  RARATAERTVALVT---------LAASVIDAYETAKGRRAELDYEDLVERARSLLHRPGV 391

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG-------------AIVLPGL 262
             A     + G    I+I  +  + PA   ++  +A                    +    
Sbjct: 392  AAWVLFKLDGGLDHILIDEAQDTSPAQWDIVRALAEEFFAGSGAHDARHPTVERSIFAVG 451

Query: 263  DCHIPTAIWNTITEKSTNITSSNTT---YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
            D       +            ++           +    L          ++ +  V  +
Sbjct: 452  DVKQSIYSFQGADPAGFGTARAHFATRVAEAEKLFRRVPLEQSFRSTDAVLQAVDAVFAQ 511

Query: 320  MYGRSMVI------------------SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
               +  V                   S               +        +     +  
Sbjct: 512  PDAQDGVAEVDSAGGKVPIEPVPIVHSAVRAGHAGRVEVWPLLEPQDEEIGEMWAPPIER 571

Query: 362  IEADNEREE-AISIAIALRMSLD------------ENKKKSALITADRNLARRVKLELTR 408
               D  R   A  IA  ++  +                    L+         +   L +
Sbjct: 572  RSTDEPRARLATRIATRIKGWIAAGEPLPARGRPIRPGDVMVLVQRRGPFVHELVAALKK 631

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
              + +     + L+  +    L ++   +    D + +AT++K PL      E Y     
Sbjct: 632  AEVPVAGVDRLMLTDQMAVMDLVAVGQTVLLPEDDLTLATVLKGPLVGLSEDELYHLCQG 691

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
               + V       + +    +          +    VP          +     L+  + 
Sbjct: 692  RREKRVWRELRLRATEGGVYRQAYDRVRYWLRLADRVPPHDFYQRVLARGGREQLIHRLG 751

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                  +     +       S                          W       +    
Sbjct: 752  FEAEDAIDEFLAQTLAYERESTPSLQGFL-----------------HWLVVGDFEVKREL 794

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                +T   +  +  + +     ++      P+++                  D  +   
Sbjct: 795  EGAGDTVRVMTVHGAKGLQAPIVILPDTLRVPRLQ------------------DQWLWYT 836

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
             ++G      A +   +  + +    +   +   +      +A             +   
Sbjct: 837  ADDGSDIPLWAASSKAADRVSAQARAEAKRRQDQEYRRLLYVAMTRAEDRLVVCGWQQRR 896

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
               A  W + +    G       +            +  T +      P P   L+A   
Sbjct: 897  AGTAGNWYELIRN--GLAPIAGPQPMPDDPDGPPMLMLETLQTASAPSPAPETALQAATL 954

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD-----RGTLFHNIITELIKKR 823
                S           V           P  +   D  D     RG + H ++  L +  
Sbjct: 955  PEWASRPPLQPEPSPPVPLAPSRPAGEEPPVRSPLDADDGRRFKRGLILHRLLQTLPEIA 1014

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
             ++        +++ +            +D      +   + + L+      +       
Sbjct: 1015 PDRRAAAGLRFLERPVH----------GLDREIAEAWLAEALAVLDDPAFAAAFAAGSRA 1064

Query: 884  NIPAKMAIES--IGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSL 939
             +P    +        ++G  DR+ +     V + D+KT        +   +    QL  
Sbjct: 1065 EVPIVGVVAGADGPAVVSGRIDRLAVTDD-EVLVVDFKTNRPAPLTVDAVPEAYRRQLGT 1123

Query: 940  EAAALK 945
                L 
Sbjct: 1124 YRTLLA 1129


>gi|284006602|emb|CBA71863.1| DNA helicase II / ATP-dependent DNA helicase [Arsenophonus
           nasoniae]
          Length = 723

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 66/690 (9%), Positives = 163/690 (23%), Gaps = 119/690 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
              T +A  E+R     + G          + +   +      A  L +        N+ 
Sbjct: 63  VTFTNKAAAEMRHRINALLGSDQGGMW---VGTFHGLAHRLLRAHYLDA--------NLV 111

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
           +  ++      +R     + + +   +       P  A+W        I+  + E  + +
Sbjct: 112 QDFQILDSDDQYR----LLRRIIKAINLDESKWPPRQAMW-------YINAKKDEGLRPQ 160

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-----EAEHL 222
            + +  N     W            + + E              +               
Sbjct: 161 HIESYGNPTEATWLR--------VYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQH 212

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +     I++     +       +  +A      +++   D       W     ++    
Sbjct: 213 YRDRFTNILVDEFQDTNSIQYAWIRVLAGDTGKVMIV--GDDDQSIYGWRGAQVENIQRF 270

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
             +   +                           +  +       +      +     N 
Sbjct: 271 LQDFPAAE--------------------------TIRLEQNYRSTNNILKSANALIANNN 304

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLAR 400
           + L   +         ++L    NE +EA  +   ++   ++    K+ A++      +R
Sbjct: 305 NRLGKNLWTEGADGEPISLYCGFNELDEARYVVSRIKQWHEKGGSLKQCAILYRSNAQSR 364

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            ++  L +  +   I  G             S L  +   ND  +   +V  P    G  
Sbjct: 365 VLEEALLQSSMPYRIYGGQRFFERQEIKDALSYLRLVANRNDDASFERVVNTPTRGIGER 424

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                R                                 +               +K LA
Sbjct: 425 TLDTVRQA------------------------------AREKQLTLWESCEYLLREKVLA 454

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
                 I + +  +            ++      + +            +    +   EE
Sbjct: 455 GRAAGAIERFLELIDALAKETMDMPLHVQTDRVIRDSGLRAMYEQEKGEKAQARIENLEE 514

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
             T +  FS   E    +   A      +        +         + ++    ++ L 
Sbjct: 515 LVTATRQFSYQEEDQDLMPLQAFLSHAALESGEGQAELHQ-----DAVQLMTLHSAKGLE 569

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
           F  + + G+ E           F S++   +      E+ +        M      L  T
Sbjct: 570 FPLVFIVGMEE---------GMFPSQMSAEESGRLAEERRLAYVGLTRAM----EKLTLT 616

Query: 701 RSLREN----NIPTIASRWLQRLLVLGGTD 726
            +         +    SR++  L      +
Sbjct: 617 YAESRRLYGKEVYHRPSRFIAELPTECIEE 646


>gi|302340418|ref|YP_003805624.1| hypothetical protein Spirs_3945 [Spirochaeta smaragdinae DSM 11293]
 gi|301637603|gb|ADK83030.1| hypothetical protein Spirs_3945 [Spirochaeta smaragdinae DSM 11293]
          Length = 899

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 76/674 (11%), Positives = 166/674 (24%), Gaps = 99/674 (14%)

Query: 377  ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
            AL  S ++ ++ +  +  DR    R+        I++    G PLS ++      +L   
Sbjct: 239  ALLQSGEDPREIAITLPDDREWRPRLAAAAADRSISLRFRGGEPLSESVPGRFFRALWET 298

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                  F  +  L  +    +                  +R  ++ +     +       
Sbjct: 299  SSGDWAFDQVENLFMNQAVPWRSAGLVRR---------IVRFGRDYFCHKGARLWEQTLS 349

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
              +                                +  V+ +       G  S +     
Sbjct: 350  RAE---------------------------HPVLASTFVSLRDGIRQLTGAESFALLRDR 382

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                L+     +     +L   +         ++  ET + +      +   ++ L   +
Sbjct: 383  MQPFLRTHIDPDGWADDDLPVLQRCLESLGELAE-AETSAGLGDLGAVFPLWLSYLEGRQ 441

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
             V+ +      + +     S  ++     L G  +        +  FLS   +  L+   
Sbjct: 442  YVRRQA--RMGISVYQYRVSAGISPKYHFLPGCGQEKSRVLLHRYSFLSEEERKQLSGSE 499

Query: 677  AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF--------- 727
             +             +G      + +      P +    L      G             
Sbjct: 500  KDLSSAFLGLYASAGSGAE---ISFADEGFGGPDLPPSELIDYERSGEESGDESFSDPFK 556

Query: 728  -----FDNLKKRGQCYLDWTRKL-----------------DYTTKQPHYKRPKPFPPLEA 765
                 +   +     +    + L                          +          
Sbjct: 557  NEISYWAGGRLPASLWPLQQKGLLRYLATGGAGKRVDFTIRKVEDDNLLRSLLSRLAGGR 616

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
                 S + ++   + P+A  A R LK        +  D    G LFH            
Sbjct: 617  DEIEISPAMLEAFWSCPFAFLADRCLKAREPELELRFTDPRIVGNLFHTAAARFFSDTSA 676

Query: 826  KNTPEINHLMKQII---DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
            ++  E    +   +        +    P +           + + +       S+   + 
Sbjct: 677  EDADERMEQLLSRLFSNWHRGPEPVPLPPVAGAMERFVRAGAKALVREFYDHFSAFRPMD 736

Query: 883  VNIPAKMAIESIGIHL---------TGFADRIDLLKSGFVDITDY------KTGDNPKKE 927
            V    K   +  GI L         +G  D I    S    I DY      K G     +
Sbjct: 737  VEKGMKSPRKGRGISLEGGRWKISISGRPDWIGRSAS-SYLIIDYKKRLFWKKGQLLPDD 795

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
                    Q++L  + L+   F +      A   Y  +           ++K++  DE S
Sbjct: 796  E-SLPQSFQMALYRSLLRENGFGE------AAAAYFDMTSGLFQPVCGTEEKQWFDDEQS 848

Query: 988  EKSLKNLIEIVTLL 1001
                  L + +  +
Sbjct: 849  RLLFDRLDQALDAM 862


>gi|227833082|ref|YP_002834789.1| putative RecB family exonuclease [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182428|ref|ZP_06041849.1| putative RecB family exonuclease [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454098|gb|ACP32851.1| putative RecB family exonuclease [Corynebacterium aurimucosum ATCC
           700975]
          Length = 267

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 77/231 (33%), Gaps = 20/231 (8%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
             S S        P     R I KL              +GTL H ++ ++ +    +  
Sbjct: 6   ALSPSRASDYKQCPLLYRFRAIDKLPEPKT-----KAQVKGTLVHAVLEKMHQLPREQRE 60

Query: 829 -PEINHLMKQIIDSHFE-----KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
            P    ++K       E     +E +P   ++ +     ++   + + E       +   
Sbjct: 61  YPAAVKMIKPEWAVMLESDPELRELVPEPEELDFFVEARELIKGYFQMEN--PQGFDAHE 118

Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
             +     +   G+ + GF DR+D+  +G V + DYKTG  P      +    Q++  A 
Sbjct: 119 CEMYVDTVLP-NGVPVRGFIDRVDVAPTGEVRVVDYKTGKKPLPR-YSQDAQFQMNFYAL 176

Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK--KYSADELSEKSL 991
                    I  +    L Y+++     +     + +  +    EL  K  
Sbjct: 177 VYWR-LLGTIPTQ--LRLMYLKVLDSMFLTPGPEELEYFERDLGELWAKIE 224


>gi|227543759|ref|ZP_03973808.1| ATP-dependent nuclease subunit B [Lactobacillus reuteri CF48-3A]
 gi|300908826|ref|ZP_07126289.1| ATP-dependent exonuclease [Lactobacillus reuteri SD2112]
 gi|227186258|gb|EEI66329.1| ATP-dependent nuclease subunit B [Lactobacillus reuteri CF48-3A]
 gi|300894233|gb|EFK87591.1| ATP-dependent exonuclease [Lactobacillus reuteri SD2112]
          Length = 1260

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/621 (9%), Positives = 162/621 (26%), Gaps = 52/621 (8%)

Query: 156 IDIIETEEKKWEDLHALKNEKYGM-------WWLLAADFLKIASKYWTERLVELNASSPV 208
           ++ ++      +DL  + +             WL     ++I    + +RL +    +  
Sbjct: 137 LEELKNANITADDLTDIISRVKSANDPAANQAWLAKMHDVEIIYHAYEDRLRDRYIGNSE 196

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
            Y+  +  +  +   +  K    I           +++  +  +     +   LD   P 
Sbjct: 197 LYRQLV--SYLQKSPEAAKMHFFIDRFAQFTANEQQVVDALITNAASTTISLTLDRGYPD 254

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
                    +                   +L  F  + +++VK L NV+     R     
Sbjct: 255 QNH-----PNPQELPPKNNLFYSSAMQFHRLWKFGQMHQKEVKVLQNVAFATTPRVGA-- 307

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---EN 385
           +            ++ +         C  ++  +   N   E  ++A  +R  +      
Sbjct: 308 ELQQVDSYFKRYASEPIGPSEREDLSCPPNIQFMTTTNRMTELNNVATKIRQLVASGKYR 367

Query: 386 KKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
            +   +++   +  + +         I +       +      ++LT+LL    +     
Sbjct: 368 YRDFLILSRHLDGYQTMIEPVFAAHNIPVFNDHERLMDNHPLVTLLTTLLELPQRGYRTA 427

Query: 445 AIATLVKH----PLAK----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I  L+K     P        G  +   +        +       S    +    +    
Sbjct: 428 DIIQLLKTWLLVPRTGTGDLMGLSDFQAAVFATENWCLKQAIEGKSAWTTNDPEKIKQLW 487

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN-----STCGNLSIS 551
                N   P +     ++  +   L+ D +   + P+             +T     ++
Sbjct: 488 QAPGTNLTDPKYAQSRLKKLNDQLALVKDFVANHLLPVFDQFKQAQSGQELATALYQFLA 547

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN------AIEW 605
                                     ++   T   +  + +E     +          ++
Sbjct: 548 AMGVTDRLYAWQQYQSTRDLDLARQPQQVWTTFCQILQEYVEILGQQELRDGTSEVLADF 607

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            +++                  + +  T   +  N   + + G  + V P+    +  L+
Sbjct: 608 SELLQAGFAAAQYSQIPATLDQVVVSETGIVQSENRKVVFMIGSTDDVMPEMQESDSLLT 667

Query: 666 RVMQSDLNLKTAEKY-----------IGQAAHDFEMANGTRHLIYTRS--LRENNIPTIA 712
              +  L+    E +           I +    +      +  +   +     ++     
Sbjct: 668 DQDKDVLSAYLDEDFQYLPGTAIDQLIDEPFIHYTGFMNAKEQLIFSAPQTDSDDKELSI 727

Query: 713 SRWLQRLLVLGGTDFFDNLKK 733
           S ++  +    G    +    
Sbjct: 728 SPYMHDMARYFGQPVCEYPLA 748



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 82/293 (27%), Gaps = 42/293 (14%)

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
            +L   G  Y +    L     Q  Y R  P      +    S S+++    + Y  + + 
Sbjct: 830  SLVAAGFHYQNKIDSLGNKLAQALYLRTAPD-DERGRVLYASISQLQDFYINQYEYFLKY 888

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-------EINHLMKQIIDSH 842
             L+L               GT FH  +   +      N+        +      Q+ID  
Sbjct: 889  GLRLQKRDEL--TLSNDRIGTFFHKAMETFVTTIRENNSSFADLAHKDNQMQRDQLIDHA 946

Query: 843  F----------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS--SIEKIFVNIPAK-- 888
                        +                 I  + L    +       + +   +     
Sbjct: 947  LVTAQKNQPTLLRLINSSAQAQFQYQQLTAIVKTMLITLCRQAEYTGSQPVKTEVQFGRI 1006

Query: 889  -----MAIESIG--------IHLTGFADRIDLLK---SGFVDITDYKTG-DNPKKETAQK 931
                   + S+         I+L G  DRID LK     F+ + DYK+        +A  
Sbjct: 1007 GNQQPGNLGSLDYPLKDNHHIYLRGRIDRIDNLKQGNDNFLTVVDYKSSNHLFDLTSAYY 1066

Query: 932  LIDPQLSLEAAALKAG-SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
             +  QL      L+A  +  + +  ++A   Y+RL                  
Sbjct: 1067 GLSLQLLTYLNGLQANLAELETNNSRLAGALYLRLNNPTIKAAELKKSSLDDL 1119


>gi|152974673|ref|YP_001374190.1| recombination helicase AddA [Bacillus cereus subsp. cytotoxis NVH
            391-98]
 gi|251764504|sp|A7GM37|ADDA_BACCN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|152023425|gb|ABS21195.1| Recombination helicase AddA [Bacillus cytotoxicus NVH 391-98]
          Length = 1242

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 94/909 (10%), Positives = 203/909 (22%), Gaps = 141/909 (15%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF-----LKIASKYWTERLVELNASSPV 208
              +   +        L  L  +++   +                 +  + L E       
Sbjct: 335  SFLRDFQEMHPVLGKLVQL-VKEFSNRFQAIKRDKGMVDFTDLEHFCLQILSEQGEDGE- 392

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA-NHPNGAIVLPGLDCHIP 267
                 L  +      +     +++     +      ++  V  +      +    D    
Sbjct: 393  -----LRPSPVALQYRNRFAEVLVDEYQDTNFVQESIIKLVTKDSEQEGNLFMVGDVKQS 447

Query: 268  TAIWNTITEKSTNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
               +               T              +     + L       K++       
Sbjct: 448  IYRFRLAEPGLFLGKYKRFTQEGLEGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGE 507

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR- 379
                                    L     + ++        E +  + EA  IA  ++ 
Sbjct: 508  IEYDADAELKLGASYPEGEDVAAELLCIHQSEEEVLDGEEGEEVEKAQLEARLIAQRIKA 567

Query: 380  --------------MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
                                 +   ++      A ++  EL   GI +            
Sbjct: 568  MVDSGYTVYDRKTNEMRQVQYRDFVILLRSMPWAPQIMEELKLQGIPVYAELATGYFEAT 627

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
              +I+ ++   I      + +A +++ P+      E  + RA            K     
Sbjct: 628  EVNIMMNVFRVIDNPVQDIPLAAVLRSPIVGLNDEELAMLRA----------HAKKGSFY 677

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCITP------LVT 536
              ++S +           H          +          L D I +          +  
Sbjct: 678  EVMRSFLRGAPLEGGKELHEKLKWFYHLLQGWREFARQQSLSDLIWKVYRETGYYDFVGG 737

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                K        + D  +              R +  +    +    +    +  +   
Sbjct: 738  LPGGKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVR 797

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF--------------- 641
             +  +  + ++     + G   +   +     F+L         F               
Sbjct: 798  IMTIHKSKGLEFPVVFVAGLGRRFNTQDLMQRFLLHKDFGFGSQFIDPRKRIKYTTLSQL 857

Query: 642  -----------------DTLILGGLNEGVWPKNTAKNP------FLSRVMQSDLNLKTAE 678
                               + L    E +    T K+       +L     ++  L    
Sbjct: 858  AIKRKMKRELIAEEMRVLYVALTRAKEKLILIGTVKDKEKEMEKWLDTREHTEWLLPDYV 917

Query: 679  KYIGQAAHDFEM--ANGTRHLIYTRSLRENNIPTIASRWLQRLL-VLGGTDFFDNLKKRG 735
            +       D+        R       L +  IP     +                 +   
Sbjct: 918  RASASCYLDWIAPSLYRHRDSEILLELGQGTIPNEIYEYDTSWKVEFVDGKTLLAPEPAQ 977

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR-----------TYSFSEIKQ--LINDP 782
            +   +    L      P     K         +             S +EIK+     D 
Sbjct: 978  EEKQELLEALREKKAVPLESERKDEVYNRLTWKYEYEDATLQRAKQSVTEIKRNYQSEDG 1037

Query: 783  YAVYARRILKL----DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
                  + L+           KK     +RGT  H ++  +     +         +++ 
Sbjct: 1038 SDTAFIQKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKQSITIESIQEQ 1092

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES----- 893
            I     KE L    +        +I   F  H  K     + +   +P  M + +     
Sbjct: 1093 IAKMVNKEIL--TFEQAEEISVERIVAFFESHLGKRVLEAKSVEREVPFTMMLSAKEAYQ 1150

Query: 894  -------IGIHLTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQL 937
                     I + G  D +     G + + D+KT    G  P      K         QL
Sbjct: 1151 NWQGKSEETILVQGVIDCMIEEDDG-ITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQL 1209

Query: 938  SLEAAALKA 946
            SL A AL+ 
Sbjct: 1210 SLYAKALEK 1218


>gi|239617417|ref|YP_002940739.1| Exodeoxyribonuclease V [Kosmotoga olearia TBF 19.5.1]
 gi|239506248|gb|ACR79735.1| Exodeoxyribonuclease V [Kosmotoga olearia TBF 19.5.1]
          Length = 991

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 112/987 (11%), Positives = 260/987 (26%), Gaps = 138/987 (13%)

Query: 35  RYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS----------TILPIIK----S 80
            +     L + +V     T++A +E++        +K               +I     +
Sbjct: 52  AFRHGEKLDVHNVVAITFTRKASKEMKERVHLRINEKIENNEPGDWKNLRSRLIYAWIST 111

Query: 81  LGDVVEEKFTADLLLSYNLN--PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
           +    E       +          +S ++R+   A+++  +  +  D ++      PL  
Sbjct: 112 IHSFCERILRESSIFLGIDPGFEILSGVRRVALEAQVVRTYFEQHLDELE------PLFD 165

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADF---LKIASKY 194
            I       L K     +  +        +   LK         L    F    K   ++
Sbjct: 166 LIGVDKTFELFKKALSGM-RVNLRIISPYEEEPLKIGNDGEKILLATRTFHKHFKQLVEH 224

Query: 195 WTERLVELNASSPVGYQ---IALMRAEAEHLMK--GTKGPIIIAGSTGSIPATARLMSTV 249
           +       N+            L+    +   K       I+I     +      ++  +
Sbjct: 225 YENEARRNNSLDFDDLLIKTRDLLHNFPQLREKYVRRFKYILIDEFQDTDWLQKTIIDYL 284

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                   +L   D       +        N T +               L+ L + R  
Sbjct: 285 HE-EERNFLLFVGDAKQSIYRFRGADVTVFNRTKAEFEIKNAH-------LETLSVNRRS 336

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA---DN 366
                ++          I                 +           S V ++ +   D+
Sbjct: 337 H---PDLVEFQNRLFSKIMLQDRSGKYYKSIYDTEVSAIPYEQDSNDSRVRVLVSENSDD 393

Query: 367 EREEAISIAIALRM------------SLDENKKKSALITADRNLARRVKLELTRFGINID 414
            +  A  I   L              +        A++        R +  L   GI   
Sbjct: 394 SQVVAQYIKNLLSEEITFRNKDGSYSTRKIKPGDIAILLRKFVNVSRYEDALEENGIPYY 453

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
                        +   + L+ I    D  A A  +  P     F + +  +        
Sbjct: 454 TVGSKAFYDRPEIAGPLAWLDVIVDPLDDAAFARFLLSPAFGATFEDLFELK-------- 505

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                                        H+     + ++E  +    L           
Sbjct: 506 -------------------------SKEKHISDAILKTTDERFKPLRELFIKY------- 533

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
              K   + +       D T+       ++   E          E  K L  L + + E 
Sbjct: 534 SELKHVLSPSSVLQKFVDETEYLPKLA-SMKRGERAINNVKKMLEIAKELDRLGTSLREL 592

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG-----GL 649
            S IKA             +      + E+S ++ +L   +S+ L F  +I+      G 
Sbjct: 593 SSNIKA--------FIDSSEETEATLETEESDSVKLLTVHKSKGLEFPVVIVADTFWKGK 644

Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI----------GQAAHDFEMANGTRHLIY 699
           ++G     T ++ ++    Q      T E  +           +    +   +  R ++ 
Sbjct: 645 SDGSPYILTGEDGYIVSREQPKKESDTIESQLHLEEKEKNLEEEKRTLYVAFSRAREMLV 704

Query: 700 TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP-K 758
                +          + +  ++ G +      +     ++    +    +    K    
Sbjct: 705 VSLNGKKATSDRPWSQMLQGTLITGENQLCEDMEDLVEIVEPGEAVREEPESIEEKESFI 764

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-RTDRGTLFHNIIT 817
              P     ++       + I+ P  +     +++              + GTL H+++ 
Sbjct: 765 IQWPDIEFIKSVDDRSYIKYIS-PSLLAEDFTIEISESEPGDILIRKPRELGTLTHSVLE 823

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            +  +        +  L+   I +  ++         I R + +K+    L  E +    
Sbjct: 824 AVGIRGRTGRVTTLESLLSGGIPASVDRIRFSEEDYEIVRKILYKLIDHPLIKEIETSDE 883

Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937
                  +  +   +     L G  D++  + +G   I D+K      +++  K  + Q+
Sbjct: 884 ---AMSEVQFQKKFD--RYVLLGIVDKLYRV-NGNWRILDFKF-AEFSQKSFPK-YEFQM 935

Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIR 964
                 LK      +   + A L +++
Sbjct: 936 KFYLYILKE-----LLAPECAKLLFLK 957


>gi|213965620|ref|ZP_03393814.1| RecB family exonuclease [Corynebacterium amycolatum SK46]
 gi|213951779|gb|EEB63167.1| RecB family exonuclease [Corynebacterium amycolatum SK46]
          Length = 292

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 78/255 (30%), Gaps = 36/255 (14%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
               S S        P     R I K+              +GTL H ++ ++      + 
Sbjct: 1    MALSPSRANDYRQCPLKYRFRAIDKIPEPSTV-----AQVKGTLVHAVLEQMHAWPREER 55

Query: 828  T-PEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
            T P     +K   +    K     E +P      +      +   +   E       +  
Sbjct: 56   TYPAAVKRLKPTWEDMRAKDEELIELVPEDDYYDFLVECRGLLKGYFMMEN--PMGFDAA 113

Query: 882  FVNIPAKMAIES-------IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
             +    ++ I+        + + L GF DR+D+  +G V I DYKTG  P      + + 
Sbjct: 114  EMEKFVQLVIDPDADQTVPLSVPLRGFIDRVDIAPTGEVRIVDYKTGKKPSPRFQDEAL- 172

Query: 935  PQLSLEAAALKAGSFSQIDCRKVA--NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
             Q+   A       + ++  R      L Y+++        +         +    +   
Sbjct: 173  FQMRFYALV-----WWRLTGRIPEQLRLMYLKVADD-----LVLSPNATELEAFQAEIAD 222

Query: 993  NLIEIVTLLQNGEQP 1007
                IV    +GE  
Sbjct: 223  LWSAIVR---DGETG 234


>gi|78045143|ref|YP_359945.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997258|gb|ABB16157.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 718

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 72/704 (10%), Positives = 173/704 (24%), Gaps = 132/704 (18%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNP-- 101
            +     T +A +E++     +    +       I +           D+          
Sbjct: 54  EILAITFTNKAAREMKERVERLISGSAREIW---ISTFHSFALRILRNDIEKLGFSRDFT 110

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIK---DLYPESPLSLPISPANAIWLAKNLADIIDI 158
                 +L  +   +                 +  S     ISP      A +L      
Sbjct: 111 VYDEEDQLQVIKECLKELNIDDKRFAPKAIAYHISSAKDKLISPRQYRDDADDLFK---- 166

Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
                                      + + I    + E+L + NA          +R  
Sbjct: 167 ---------------------------EKVAIIYNMYQEKLNKNNALDFDDLLYYAVRLF 199

Query: 219 AEHLMKG-----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
             +             I++     +  A  RL++ +A       V+   D       W  
Sbjct: 200 ENYPRVLEYYQRRFKYILVDEYQDTSHAQYRLVNLLAQKHRNLCVV--GDPDQSIYSWRG 257

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
               +            +P+  +  L +     ++ +     V  +   R      S   
Sbjct: 258 ADITNILNFE-----RDYPEAKVVILKENYRSTQKILDAANAVIAKNRMRKEKELFSTKE 312

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSA 390
                                    V    A +E++EA  +A+ +   +   + N    A
Sbjct: 313 SGHP---------------------VYFYPAVDEKDEAAFVALTIESLVKSGEYNFNDIA 351

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           L+     L+R  +    + GI   I              + + L  +    D +A+  ++
Sbjct: 352 LLYRTHALSRNFEEAFMQRGIPYVIFGSRRFYDRKEIKDIIAYLRIVANPYDKVALKRII 411

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                       +          +++   +               +
Sbjct: 412 NEP-----------------------KRGIGEASFAKVEAYADETGLPIGLLLLRDEALA 448

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            +S + ++      + +L        ++  K+         +  + +         D   
Sbjct: 449 LVSGKTRKALKEFGEMLLW-------FRELKDRVSVTKLTEEILERSGYLPALKAEDTME 501

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
               +    E  T++  F +  E               +  +        +    + + +
Sbjct: 502 ARARIENLNEFLTVTQAFERESED--------KSLEAFLGTISLLTDADTEEGGENRVRM 553

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L F  + L GL EG++P +              +     ++   +    +  
Sbjct: 554 MTLHAAKGLEFPVVFLVGLEEGIFPHS------------RAIFSIDPQELEEERRLCYVG 601

Query: 691 ANGT-RHLIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFD 729
                + L  TR+ R            SR+L  +         +
Sbjct: 602 ITRAQKRLYLTRAWRRTVYGRTDFNEPSRFLDEIPEELIESLLE 645


>gi|220916545|ref|YP_002491849.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954399|gb|ACL64783.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1195

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 89/866 (10%), Positives = 198/866 (22%), Gaps = 63/866 (7%)

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIII 232
                   A  ++ A   +  R     A       +               ++G    +++
Sbjct: 310  APQQAELARLVEDAEARYAARKASARAVDFDDLLLRARDLLRADPGVRAELRGRLRALLV 369

Query: 233  AGSTGSIPATARLMSTVANH---PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
                   P    +   VA     P G +++   D       +                  
Sbjct: 370  DEYQDVNPVQQEVFELVAGPDGGPAGPVLVAVGDLKQSIYRFRGADVAVFARLIRRLGAG 429

Query: 290  T----HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR-------SMVISKSFLPPDTSD 338
                 H   +       L++  E   R          R             +  P     
Sbjct: 430  QGRVLHLSENHRSAPAVLELVNEVSARAFRPPPGEPPRDDELAFGEHDRLVATRPEALRP 489

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM-----SLDENKKKSALIT 393
                     +    ++   +   I A      + +  + +R      +        A++ 
Sbjct: 490  ACEVLEDGAEGNAAERREREAEAIAARIRALVSGAAGVEVRERDGVTARRPRFGDVAILF 549

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                     +  L   GI   ++ G           L  LL A+   +D +A A L++ P
Sbjct: 550  RRLTQIAPYERALRAAGIPYRLARGGGFYQAPEVRDLGELLAALADPSDAVAWAALLRSP 609

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                      L        L  L          +L + V    A  +    V        
Sbjct: 610  ACAVSDGSLLLLARAGLGRLPWLAPA-------ELAAEVDRAAAGAQPGAGVVAAGPGAG 662

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                     +       +  L+      ++    + + +     V  L            
Sbjct: 663  PPAAVAPRAIPADEWARLLRLLAAYRTLHALRDRVPVGELLSRAVEALDLDAALLAGPDG 722

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                    K L+       + G+  +  A                + ++E +  + +L  
Sbjct: 723  ERRAVNLEKALALAARFGEDGGTPAELAAHLRAQAAR---PPREPEAELEAADAVSLLSV 779

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY-----IGQAAHDF 688
             +++ L +    +  L                  +   L     E +     + +A  D 
Sbjct: 780  HQAKGLEWPVAFVPDLGARARADLRRALLDREGRLCVALFDPAREAFVETAALARARDDD 839

Query: 689  EMANGTRHLIYTRSL----------RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
              +                                R L    +    D    +       
Sbjct: 840  RRSAAAESRRLLYVALTRARDLLVLSGEGSGAETWRGLVEAGLAERPDLARRIPVAEDAA 899

Query: 739  LDWTRKLDYTTK----QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                                  P   PP        + +E+ +    P      R+L + 
Sbjct: 900  AAAHAPPAPAPAAASTTEPLAPPPLAPPAPPAATRAAVTELAEYARCPRRHLLGRVLGIP 959

Query: 795  FIPHFKKDPDRTD--RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                    P   D  R T    +   ++ +      P           +    +   P +
Sbjct: 960  EPRGAPGVPPGDDPGRATARGTLAHAMLAETDLGAPPLERRAQLAAAAARRGYDPASPGV 1019

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG----IHLTGFADRIDL- 907
              I   +  + + +    E  + +   ++   +P  + +        ++L G  D +   
Sbjct: 1020 RRILLEVA-RFAEAPGGRELALAAREGRLLREVPFLLRLGPGDGAPAVYLVGALDALVQE 1078

Query: 908  LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
             + G + + DYK          +     QL     A            ++  L       
Sbjct: 1079 RRGGGLTVVDYKYATPRAGAAER--YRLQLLAYVLAAARAHPGARVRARLQFLRGDHRAV 1136

Query: 968  KFKIDCITNDKKKYSADELSEKSLKN 993
                     ++ +  A  L+ ++ K 
Sbjct: 1137 DVTPSARELERFEQDAPRLAAEARKG 1162


>gi|284052477|ref|ZP_06382687.1| hypothetical protein AplaP_13498 [Arthrospira platensis str. Paraca]
          Length = 208

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 82/220 (37%), Gaps = 26/220 (11%)

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
            +  L ++ IN+   +    +K   + +F+K        +   ++      +    E+ ++
Sbjct: 1    LRRLERQDINEALSQAEAALKAEENVNFDKFMGWEARRLEGLNMLELNLQA----EDFLR 56

Query: 876  SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK-TGDNP---KKETAQK 931
            S+ E I             G+ +T   DRID   +G + + DYK TG  P   K ++ Q 
Sbjct: 57   SNAEIISCENSFNAEW--YGLKVTARVDRIDRTPTG-LLVLDYKTTGSLPLGIKDDSGQA 113

Query: 932  LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
             I+ Q+ L   A+    F ++    V       LK++  +     D      +  +++  
Sbjct: 114  KINIQMPLYQQAIAQN-FKEVQQVDVK---LYSLKKQRYLPAKVTDPAI--LEAFADEVK 167

Query: 992  KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031
            + L +       G   +       ++     ++D + R  
Sbjct: 168  QRLQQ-------GN--YPVAPDQKQQVCQYCQFDSVCRKG 198


>gi|196228889|ref|ZP_03127755.1| hypothetical protein CfE428DRAFT_0919 [Chthoniobacter flavus
           Ellin428]
 gi|196227170|gb|EDY21674.1| hypothetical protein CfE428DRAFT_0919 [Chthoniobacter flavus
           Ellin428]
          Length = 991

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 106/905 (11%), Positives = 228/905 (25%), Gaps = 90/905 (9%)

Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
           W  K           + + +P         +  LA  I +         DL     E   
Sbjct: 22  WLEKAAAQAPTSGRVTAILVPHRADAYYLKSLALARRIGLWNLRFLTPSDLRDHLAEHLP 81

Query: 179 MWWLLAAD-----FLKIASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKG 225
                         L  A++     L   +A+S       L++A                
Sbjct: 82  PAAKSPLREHSRLLLATAAERLANSLTTESAASVAAAPDQLLKAIDMIGQAGWDFSSAGP 141

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
                I+A     + A    MS   +     +V       +   ++              
Sbjct: 142 RHLQPIVAEFRRLLAAAGFQMS--HDTDRATLVAARHAEPLFRELFVIGFHALHWPLWPL 199

Query: 286 TTYSTHPQYSLAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              +     +    L    ++    D   +G   +       + +     P +  ++  D
Sbjct: 200 LEAAVRLAETSVVCLTEPRMEAGDLDAAWVGTWEDTFEPAQPIPADPPSSPLSEALQLPD 259

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSALITADRNLARR 401
               +        ++VA +   +  E A +IA       +  +  +   L  +   L+RR
Sbjct: 260 SPVTRFQREAAPTNEVAFLVGLDTAEHARAIATRALQYLADRKCDRLGILFPSAGALSRR 319

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           V   L   G+  D      L+      +         K   + A  TL ++P A      
Sbjct: 320 VAALLAEAGVAHD----DGLAYQSPGPL--------EKDTAWEAWLTLQENPRAPVLLRY 367

Query: 462 KYLS-----RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                        A +            ++D   ++ + +A            +  +   
Sbjct: 368 VRSRGETPLAGLKADDACYELERAFQELLIDDLGVLAEFLARHPREQSRALAAALHTLPL 427

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                 L + I +           + +        DW +     +         +   + 
Sbjct: 428 LPERATLGEFIQRTHEIFEASAWTERAAALQHFARDWNQSRDLLISRRTWLRWLQETLVS 487

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
           ++       S     +      +A++  W  +I   ++     P  +++      G L  
Sbjct: 488 WQARRAEKGSHPYSRVHLLPYAQADSQAWTHLIVAGLNEGQWPPPFDEA------GFLGE 541

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
             +      +  LN     + +     ++      L L   EK        F     T  
Sbjct: 542 DEIAALNRQVRTLNTRASVQGSQGEGHVTVQAGRALCLGPVEKRTIVERQFFNTLESTTL 601

Query: 697 LIY----TRSLRENNIPTIASRWLQRLLVLGGTDF-----FDNLKKRGQCYLDWTRKLDY 747
            I              P   S +  RL               NL      +      L  
Sbjct: 602 AITATMQLHDEAAPERPLNPSEFFTRLHFCARGRAVSQQTLTNLHGETVRWHGTAAVLLV 661

Query: 748 TTKQPHYKRPK-------------------PFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
              +P   +                            +P   + +  +  +  P  ++  
Sbjct: 662 PISEPAAAQQTRIAFDARRVASYPFGEYEFALRGAPPRPLRLAATSWETALAAPTQIFLS 721

Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR------INKNTPEINHLMKQIIDSH 842
            +L +      ++ P     G+  H  ++ +                E+   +++  +S 
Sbjct: 722 AVLGVSATNTEEETPWTLAHGSWVHRWLSVITGSIAPGTFAPLPPPAELQDRVRKAAESF 781

Query: 843 FEKENLPPHIDI-----IWRHLFHKISHSF--LEHEEKIQSSIEKIFVNIPAK---MAIE 892
            ++               W+  + +   +   L                       + +E
Sbjct: 782 HDRVAAALTARRRPMPDWWQSAWQQAWSTAMQLAVNISTVQGRTHAATEWKIGDTALPVE 841

Query: 893 SIGIHLTGFADRIDLLKS--GFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKAGS 948
              +++ G  D +         V + DYKTG       +   K    QL L A AL+A  
Sbjct: 842 DDSLYVRGRIDLLLSTSEALQDVWLVDYKTGHRDPLTADDIAKGDGLQLGLYALALRATG 901

Query: 949 FSQID 953
             ++ 
Sbjct: 902 AQEVG 906


>gi|224541821|ref|ZP_03682360.1| hypothetical protein CATMIT_00993 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525244|gb|EEF94349.1| hypothetical protein CATMIT_00993 [Catenibacterium mitsuokai DSM
           15897]
          Length = 853

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/415 (14%), Positives = 133/415 (32%), Gaps = 46/415 (11%)

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             + +  E+   +  +I G  V  K      + +    +    +   + L G+NE   P 
Sbjct: 338 DDEISPKEFDLFLQCIIPGNRVTNKT----GVIVTSLEKGLTASPKHIYLTGINETFLPL 393

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE--MANGTRHLIYTRS---LRENNIPTI 711
             +   FL        N           AH           +L YT S           I
Sbjct: 394 EISDKGFLMEEDYKQFNPHPLLLDEQLQAHYKRIIQVLLNPYLSYTFSYSKKNMAANELI 453

Query: 712 ASRWLQRLLVLGGTDFFDN--LKKRGQCYLDWTRKLDYTTKQPHYK------RPKPFPPL 763
            S  + RL  L   ++ +      +   YL+ +R  +    +          +P+     
Sbjct: 454 PSILMSRLSDLFELEYINPSLNLIKNNLYLNQSRIDEDPINRLIDHYKMTSNQPEFIKDT 513

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
               R  S S ++     P++ Y +  LK+      +     ++ G+L H ++ + +   
Sbjct: 514 NKLGRGVSVSRLETYNKCPFSYYIKYGLKITEKR--EDTLQSSELGSLCHYLMEKCL--- 568

Query: 824 INKNTPEINHLMKQIIDSHF-EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI-EKI 881
              +   ++   K  I+ +  EK +  P       +L   +  +    ++++Q      +
Sbjct: 569 --DDESLVDQEAKHYIEENLKEKYDDHPMNQYFIDNLIKDMKMTIKIIQKQLQLGGYVPV 626

Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ-----KLIDPQ 936
                    I  +    +G  DR+D   + +  I DYK+      +        +  + Q
Sbjct: 627 SKEKEISGQIGDVPF--SGIIDRVDEFGN-YARIVDYKS----SSKEIDLNLAMQGFNIQ 679

Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
           + +    L             A + Y  +K++       +     S +++ ++  
Sbjct: 680 MLVYLDMLCKQENKDR-----AGMLYFNMKKRILT---RDSSYALSDEDVLKEYR 726


>gi|302561541|ref|ZP_07313883.1| RecB family exonuclease [Streptomyces griseoflavus Tu4000]
 gi|302479159|gb|EFL42252.1| RecB family exonuclease [Streptomyces griseoflavus Tu4000]
          Length = 277

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 83/264 (31%), Gaps = 32/264 (12%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S S     +  P     R I +L          +   RGTL H ++  L      + T 
Sbjct: 1    MSPSRASDFMQCPLLYRFRVIDRLPEK-----PSEAATRGTLVHAVLERLFDAPAAERTA 55

Query: 830  EINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                 +         +          ++        W      +   +   E    S +E
Sbjct: 56   PRAKSLVPGQWDRLRESRPEVVELFADDPEGERLARWLAEAEALVERWFTLE--DPSRLE 113

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
                 +  +  ++S G+ L G  DR+D+  +G V I DYKTG  P+     +    Q+  
Sbjct: 114  PAERELFVEAELDS-GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP-EYAEGALFQMKF 171

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
             A  +       +  R++  L Y+        D +  D          E+  + L+ +  
Sbjct: 172  YALVVWR--LKNVVPRRL-QLVYLGSGDVLTYDPVLAD---------LERVERKLLALWE 219

Query: 1000 LLQNGEQPFISHLRLSEKSNIQSE 1023
             ++   +      R ++      +
Sbjct: 220  AIREATETGDWRPRPTK-LCGWCD 242


>gi|229817712|ref|ZP_04447994.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM
           20098]
 gi|229785501|gb|EEP21615.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM
           20098]
          Length = 889

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 78/710 (10%), Positives = 179/710 (25%), Gaps = 115/710 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A  E+R     + G  +  +  + +           D            
Sbjct: 83  SQILAITFTNKAAAEMRERLTALIGPVAQRM-WVSTFHSACVRILRRDGKALG--LKSGF 139

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP-ANAIWLAKNLADIIDIIETEE 163
           +I    +  RL+ I   +    +K   P S L          I     LA      +   
Sbjct: 140 SIYDSADSERLVKIIATEFNVDVKRYTPRSILGRISDYKNQLIGWRAQLAAYAPDFK--- 196

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                 + +                 I    +  RL   NA       +  +    +H  
Sbjct: 197 -PGSRNYRISKFDNVEE------LYAIIYAEYEHRLAMANAVDFDDLIVRTVELLRDHPD 249

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG---------------AIVLPGLD 263
                +     I++     +  A   L+  +A    G               A V    D
Sbjct: 250 VADYYRHKFRYILVDEYQDTNHAQYVLIRELAGVDAGETPAPTATAAGRQGPAWVTVVGD 309

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                  +     ++      +   +             L+      + + + +N +   
Sbjct: 310 SDQSIYAFRGADIRNIQDFEEDFPNAKTIL---------LEQNYRSTQTILDAANAVISH 360

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
           +       L                          +    ADN ++EA+ +A  +     
Sbjct: 361 NEGRKPKKLWTAVGKGEP-----------------IVGYAADNAQQEAVWVASEIARLHA 403

Query: 384 ENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
           E+       A++      +R ++  L   G+   +  G             + L AI   
Sbjct: 404 EDGVAYSDMAIMYRANAQSRSLEEALINAGLPYQLIGGTKFYERKEIKDALAYLQAILNP 463

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
            D + +  ++  P                 LE    RG      +M ++ +      T K
Sbjct: 464 ADDVNLRRILNVP-----KRGLGARAESIVLEYARERGTSFFDALMHMEQIEDMPTRTAK 518

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                    + +S   +       D + + +                   S   +     
Sbjct: 519 GLKAFRDLMASMSAFARANINKPSDIVAEVLAK-----------------SGLLEELQKS 561

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
           +          L  L         ++             A    +++    + D + +  
Sbjct: 562 VDPQDQSRVENLSQLQSTAAEYEQNTP-----------DATLGGFLETTALVADSDQLPN 610

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
             E S  + ++    ++ L +  + L GL +G +P + +              L+   + 
Sbjct: 611 GNEDSGKVTMMTLHTAKGLEYPVVFLTGLEQGTFPHSRS--------------LEDTAEL 656

Query: 681 IGQAAHDFEMANGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGT 725
             +    +      +  +Y      R+        + S++L+ +      
Sbjct: 657 SEERRLAYVGITRAKRRLYITRAAVRAQWGQANEMLPSQFLEEIPDELID 706


>gi|291443539|ref|ZP_06582929.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998]
 gi|291346486|gb|EFE73390.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998]
          Length = 290

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 77/264 (29%), Gaps = 32/264 (12%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S S     +  P     R I KL          +   RGTL H ++  L        T 
Sbjct: 1    MSPSRASDFMQCPLLYRFRVIDKLPEK-----PSEAATRGTLVHAVLERLFDVPAADRTA 55

Query: 830  EINHLMKQIIDSHFEKENLP----------PHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                 +         +                    W     ++   +   E+  +  +E
Sbjct: 56   PRARALIPGQWDRLLESKPELSDLFAGDSEGERLTRWLGEAERLVDRWFSLEDPTR--LE 113

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
                 +  +  +ES G+ L G  DR+D+  SG V I DYKTG  P+          Q++ 
Sbjct: 114  PAEREMFVETELES-GLRLRGVIDRVDIAPSGEVRIVDYKTGKAPRP-EYSDGPLFQMTF 171

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
             A  +       +       L  + L     +                E+  + L+ +  
Sbjct: 172  YALVIWR-----LKGVVPRRLQLVYLGSGDVMTYDPVVAD-------LERVERKLLALWD 219

Query: 1000 LLQNGEQPFISHLRLSEKSNIQSE 1023
             ++   +      R ++      +
Sbjct: 220  AIRLATETGDWRPRPTK-LCGWCD 242


>gi|255020927|ref|ZP_05292983.1| ATP-dependent DNA helicase Rep [Acidithiobacillus caldus ATCC
           51756]
 gi|254969718|gb|EET27224.1| ATP-dependent DNA helicase Rep [Acidithiobacillus caldus ATCC
           51756]
          Length = 663

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 89/731 (12%), Positives = 189/731 (25%), Gaps = 115/731 (15%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           ++   +V   +   + P  +A+VT    T +A +E++    +    +S     I +   +
Sbjct: 36  VITRKIVHLIQDHGVEPRHIAAVT---FTNKAAREMKGRVQQSLEGRSARGLTISTFHRL 92

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
             E    D+                       L +R     +          +L      
Sbjct: 93  GLEILRQDITQ---------------------LGYRENFSVVDPGDSLTLVRNLLREMQG 131

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
              LA+++   I   + +    ED+     ++            + A K      ++   
Sbjct: 132 PSDLAESIQARISKAKNDGHGPEDMP--IRDRLDELAQRVYRPYQRALKACNSVDLDDLI 189

Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
             P         A+           +++     S  A  RL+  +        +    D 
Sbjct: 190 LLPTELLSRFAEAQERWQE--RIRYLLVDEYQDSNGAQYRLLQNL--LKKRQNLTAVGDD 245

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 W      +    + +              L  L+       R+   +N +   +
Sbjct: 246 DQSIYSWRGAAADNLQRLAQDFPD---------LRLIKLEQNYRSTGRILQAANHLIAHN 296

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL---RMS 381
             + +  L     +                    + +I A +E +EA  +  A+   R  
Sbjct: 297 PHLFEKKLWSSLGEG-----------------DRIQVIVARDETDEAEQVVNAILRDRFQ 339

Query: 382 LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                +  A++    + +R  +  L    I   +S GI            +    +   +
Sbjct: 340 RQGEYRDYAILYRSNHQSRPFETALRNARIPYQLSGGISFFERSEIRDFLAYCRLLANPD 399

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
           D  A    V  P    G                                        +  
Sbjct: 400 DDAAFLRAVNTPRRGIGSATLETL--------------------------------GEHA 427

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                   + L EED +LA   +  +      L         +    ++ D  +      
Sbjct: 428 KARQMSLFAALWEEDLDLAERPLLALRSFGDWLNRTAEACARSELMPTLRDLLEEIGYRR 487

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                 + R+    W  E  + L +  ++++E     K  A     +   +I        
Sbjct: 488 YLENEGDEREARRKW--ENLEELLAWMARLLEQEDGPKNLAELLNRL--SVIHILERDED 543

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
            E+   L +     ++ L F  + L G+ E + P   +               +T  +  
Sbjct: 544 DEERDVLRLSTLHGAKGLEFSRVFLVGVEEELLPHRNS---------------ETPAQIE 588

Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
            +    +      RH L  +   R            SR+LQ L            ++   
Sbjct: 589 EERRLFYVGVTRARHKLSLSYCRRRKRYGEAQAPEPSRFLQELPRELLDWASGAEEQEAL 648

Query: 737 CYLDWTRKLDY 747
                  +L  
Sbjct: 649 SATAACSRLRA 659


>gi|34557269|ref|NP_907084.1| ATP-dependent DNA helicase [Wolinella succinogenes DSM 1740]
 gi|34482985|emb|CAE09984.1| ATP-DEPENDENT DNA HELICASE EC 3.6.1 [Wolinella succinogenes]
          Length = 681

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 72/689 (10%), Positives = 169/689 (24%), Gaps = 127/689 (18%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PP 102
           ++      T +A  E+R   + +  ++    P++ +            +           
Sbjct: 54  SNTLTLTFTNKAAAEMRERALRLVQRRDMHPPLLCTFHKFGLLFLKFHIQRLGRKPNFVL 113

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +    R   L  +       L +                              I  ++  
Sbjct: 114 IDGDDRKKILKNINDDLPVGLVESE----------------------------ISRMKNW 145

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RA 217
               ++  AL + +   +       +      + E L E N        +  +       
Sbjct: 146 LIMPDE--ALLSAQDKNY-----KLIASIYGKYEEFLKEKNMVDFDDLLLLSLKILEGDE 198

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           E    +      I++     +     +L+  +    N   V+   D       W      
Sbjct: 199 ELAKEVSEKYQYIMVDEYQDTNELQYKLLKKLCQTHNNLCVV--GDDDQSIYGWRGANIN 256

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                  +                            G     +       +      ++ 
Sbjct: 257 HILDFPDHFA--------------------------GAKVVRLEENYRSTAPILEAANSL 290

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITAD 395
              N   L   + +++     + ++E+ +E EEA  +A  +R  LD   +    A++   
Sbjct: 291 IEFNKGRLGKTLKSVKGAGEAIEILESLDEGEEAQKVAKRIRTLLDSGVSPSDIAVLFRL 350

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
             L+R ++    R  I   +   +          + S    I   +D  ++A ++  P  
Sbjct: 351 NALSRSLEEGFNRAKIPFKLVGAMRFYERSEIKDILSYFRLIVNPHDDFSLARIINKPKR 410

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G   +                 +    + +L             N         + EE
Sbjct: 411 GIGKVTQDKLLL---------EAQRAGCSLFELYKKGAIEGLVSAKNHETLTGFFAMIEE 461

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            + +                            L   +  +      +     +       
Sbjct: 462 LQAVLEE-----------------------STLRFLERFEELSLLKEYFENSKETIDRVS 498

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             EE                  +        D +  L             S +  +    
Sbjct: 499 NIEEFYGVFRDFI---------LSNPMANLEDFLNDL--SLKSDQDEVGDSFVSCMSVHA 547

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           S+ L F+ L + G  EG +             M  + +    E+ +G  A     ++   
Sbjct: 548 SKGLEFEHLFVVGFEEGFF------------PMIREGSDLEEERRLGYVAFTRAKSHLAV 595

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGG 724
             +++R  +      + SR+L+   +L G
Sbjct: 596 SHVHSRFYKGKRTELLKSRFLKEAGLLEG 624


>gi|255994849|ref|ZP_05427984.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989]
 gi|255993562|gb|EEU03651.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989]
          Length = 753

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/547 (10%), Positives = 147/547 (26%), Gaps = 89/547 (16%)

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARL 245
             + +   L   NA       +  +   +++             I++     +      L
Sbjct: 185 VYEAYQNVLKANNAMDFDDLLLNTVILFSKYPDILKIYAERFKYIMVDEYQDTSSLQFEL 244

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           ++ +A+      V+   D       W   T ++          +          +  L+ 
Sbjct: 245 INKLAHVHKNICVV--GDDDQCIYEWRGATIENILSFEKVYKGTK---------IIKLER 293

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                K + + ++ +   +    +  L   + +                    +++   +
Sbjct: 294 NYRSTKNILDAAHAVISNNSKRKEKKLWTGSVEG-----------------EKISIEVYE 336

Query: 366 NEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
           N   EA  I   +R ++ E     K  A++  + + +R  +  L R+ +   I +GI   
Sbjct: 337 NAHAEAEFIVDKIRQAVAEEGKTYKDIAILYRNNSQSRLFEEALKRWDVPYRILSGIRFY 396

Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKN 481
                  + + L       D +A    +  P    G        +      +    G   
Sbjct: 397 ERSEIVDMLAYLRVTENPFDDIAFLRCINEPARGLGKKALEKVASFARERGISLFAGLLM 456

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              + +L +                          +  A   +  I      L+   T  
Sbjct: 457 DECLAELSAAA------------------------RRGAEEFIKMIKHAQDMLLDENTRI 492

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
           ++    +  +   +  +     +  D   +             S    +    G   K  
Sbjct: 493 SNVLKYIIETSGYERKLKLADTLESDAKLENIYE------LVASVADREGSSAGDDEKLT 546

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
              +   +  +     V    E +  + ++    S+ L F+ + + G+ EG++P     +
Sbjct: 547 LSAF---LEEIALISDVDNHDETADAVVLMTLHSSKGLEFNVVFIPGMEEGIFPSGQGDD 603

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE-----NNIPTIASRWL 716
                            K   +    +      +  ++  + +       ++    SR+L
Sbjct: 604 N--------------PGKIEEERRLCYVGFTRAKEELFLSAAKWRRHYYEDMYMQPSRFL 649

Query: 717 QRLLVLG 723
             +    
Sbjct: 650 DEVPEEL 656


>gi|317049332|ref|YP_004116980.1| exodeoxyribonuclease V subunit gamma [Pantoea sp. At-9b]
 gi|316950949|gb|ADU70424.1| exodeoxyribonuclease V, gamma subunit [Pantoea sp. At-9b]
          Length = 1126

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 107/956 (11%), Positives = 241/956 (25%), Gaps = 124/956 (12%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
             LA+  + V +    Q L+ E  +  G  + I      L           +L       
Sbjct: 28  DPLAAEQVLVQSPGMAQWLQMELAQSFGIAANID---FPLPATFIWNMFVQVLPDIPKES 84

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             +      +L   +     +             L           L+  +AD+ D    
Sbjct: 85  AFTKASMSWKLMHRLPTLLEQEAFQPL----RHYLHDDDDKRKLYQLSTRVADLFDQYLV 140

Query: 162 EEKKW-------EDLHALKNEKYGMWWLLAA-DFLKIASKYWTERLVELNASSPVGYQIA 213
               W       E +  L + +    W  A    L   +    + L           +  
Sbjct: 141 YRSDWLNCWERGELIEGLGDSQQ---WQAALWRDLVDFTASLGQPLWHRANLY---ARFI 194

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI--W 271
               +A+    G    + I G +   P   + +  +  H +  ++      H    I  +
Sbjct: 195 QTLEQAKSPPPGLPQRVFICGISALPPVYLQALEALGRHIDIHLLFTNPCRHYWGDIQDY 254

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR-------LGNVSNEMYGRS 324
             + +  +       +    P +    L   L     + +         G +  +     
Sbjct: 255 AFLAKLQSRQRRRLHSTEQQPLFRDPALAPALFNAAGEQQLTNPLLASWGKLGRDNLFLL 314

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPN--------------------------IQKCFSD 358
             +  +    D      TD L + +                            +      
Sbjct: 315 SQMEAAANDIDAFVEMPTDTLLHALQADLLNLEDNAVLGVNAGELADSHGKRLLDPQDHS 374

Query: 359 VALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRF 409
           + +    + + E   +   L   ++ +     +   ++ AD +        +        
Sbjct: 375 LTIQVCHSAQREVEILQDHLLALMEADPDLKPRDIIVMVADIDSYAPFIQAVFASAPASR 434

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF--PEKYLSRA 467
            +   IS             L SLL           +  L++ P     F   E  L   
Sbjct: 435 YLPFAISDRRASQAHPAILALLSLLALPDSRFASEEVLALLEVPALAQRFSVDESGLRLL 494

Query: 468 KNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
           +  +    +R   +   +  L        +                           + +
Sbjct: 495 RRWVMESGIRWGLDDASVEALALPVTGQHTWRFGLQRMLLGYALESRNGDWQGILPYDES 554

Query: 521 VLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
             L+  +   +   L   +  +       +++DW  L    + +    +      L   E
Sbjct: 555 TGLIAELAGYLAELLAKLEAWRTRLAQERTLNDWLPLCRELIDSFFNGDSESEAALMLVE 614

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                  +  + ++             D +   +D + +  +      +     +  R +
Sbjct: 615 --TQWKQIIEQGMQAAYQQVIPVTLLRDELRSRLDQQRISQRFLAGP-VNFCTLMPMRSI 671

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
            F  + L G+N+GV+P+  A   F     Q     ++             + +  + L  
Sbjct: 672 PFKVVCLLGMNDGVYPRTLAPLGFDLMQQQMRKGDRSRRDDDRYL-FLEAIISAQQQLYI 730

Query: 700 TRSLR--ENNIPTIASRWLQRLLVLGG------------TDFFDNLKKRGQCYLD----- 740
           +   R  ++N     S  +  L+   G             D  +   +     L      
Sbjct: 731 SFIGRAIQDNTERYPSVLVTELVDYLGQSFCLPGDEDSEPDVSEQRVREHLQILHSRMPF 790

Query: 741 --------------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                             L     Q   +     P       T S  ++ +    P   +
Sbjct: 791 ATENYLPGRHGQSFAAEWLPAAAGQGEAQPDFVQPLDALPITTLSLEQLLRFWRHPVRAW 850

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            ++ L + F     + PD         + +          NT        Q+   H    
Sbjct: 851 FQQRLGVAFWMEESELPDSEPF---APDSLERYQINAQLLNTLVAGEDPSQLYARHRAAG 907

Query: 847 NLPPHI--DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
           NLP     ++ W+    ++       E   + S ++       ++ +    + LTG
Sbjct: 908 NLPYGAFGELFWQSQTEEM------QEVAAEVSGQRQAAE-SWEVDLLLGDVQLTG 956


>gi|307717800|ref|YP_003873332.1| hypothetical protein STHERM_c00830 [Spirochaeta thermophila DSM 6192]
 gi|306531525|gb|ADN01059.1| hypothetical protein STHERM_c00830 [Spirochaeta thermophila DSM 6192]
          Length = 1152

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 84/892 (9%), Positives = 211/892 (23%), Gaps = 91/892 (10%)

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA-KNLADIIDIIETE-EK-------KW 166
            +   R     ++ ++  E   +L    ++   L    L D ID ++ E            
Sbjct: 247  VRSRREGGSGLVPEVVREWREALDEVASSLKGLRVDELRDAIDTLKKELGVGKKPPSSSL 306

Query: 167  EDLHALKNEKYGMWWLLAADF--LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
              +              ++ F  L            E N  +       ++    E    
Sbjct: 307  SAVAGDLVSLLERREEASSLFGVLAEWHGEVERFKKERNLLTFGDVMHLVLTLLKEEKEV 366

Query: 224  ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-------------IVLPGLDCHI 266
                KG    I++     +      L+  +A                    +    D   
Sbjct: 367  REFYKGRFDAILVDEFQDNNGLQRDLLFLLAERKGRCGDGVPSFEDLEPGKLFVVGDEKQ 426

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQ--YSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
               ++                 S+H +             +     +  G    EM G  
Sbjct: 427  SIYLFRGADVGVFLDLKERANRSSHGEVMRLPHNYRSEPGLLDAVNRMAGAFPEEMRGGI 486

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
              +               +         +       L++A     EA  +A  +R  ++E
Sbjct: 487  EFLPAEAGREGAGFTPRIEAGVYVKEEEKARAEGRDLVDAGT--AEAWWVAGRIRRWVEE 544

Query: 385  --------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
                               A++          +      GI    +    L     ++ L
Sbjct: 545  GELVVRDGEEVRPVRYGDIAVLMRTGTNQLAFERAFRAHGIPYTAAYSRNLFLEAPANDL 604

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             S L      +D ++ A +++ PL      +      +        R         + + 
Sbjct: 605  FSWLFIAVYPHDLLSYAAVLRGPLVGLSDRDILRLIEREEGCFSLSREEVEEMLGDEEEL 664

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            L       ++         S       E  +  +         L+  +           +
Sbjct: 665  LRERVERYERGKEIYDWLVSHRDRVPHERLLRYLWVDCGYRMVLLGREQLHPFLRFYDEL 724

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              + +         CLDE ++    +   + +       +  +    +  +A + ++   
Sbjct: 725  VAFVRRWEERPLARCLDEVKEELGRYGRVDVEE-----GRGEDAVRIMTIHAAKGLEFPV 779

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
             ++     + + E    +            F+                 +    + + + 
Sbjct: 780  VVLASCGAESRREGEGKMPYFMVEGVPAFGFE--------------GDEEGKKENPLYRR 825

Query: 671  DLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDF 727
                   ++        +      +  +                A    ++ +    +  
Sbjct: 826  AAEEMKKKEAEEMLRLLYVGLTRAQSHLLITGEWRGAVGKEEHGADDGSKKTVPSFMSLL 885

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
            F+   +  +      ++     +    +R       E + R  S S   +        Y 
Sbjct: 886  FEAKIEEPEVRFKADQEGIAGVEWRDPERIPGITEEELRERVGSGSRGGRWEE-AARWYE 944

Query: 788  RRILKLDFIPH-------------FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
                 +  +                ++  +   RG +F +++   +              
Sbjct: 945  EVDEGVGGVRPGVLSVSVLAGEWEAERGGEARGRGAVFGSLVHRGMVLWARLGDEGRVRE 1004

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
              +     +  +     +D +       +   + E E   +         +      E  
Sbjct: 1005 ALRGEALAWGGDGEWGEVDRV-CEEAAALVRRWAESEVGREVLGNGAGWEVECVAEWEGR 1063

Query: 895  GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
               L G  D +  +  G V I ++KT + P  E  +     QL L       
Sbjct: 1064 --VLHGVMDAV-WVGDGVVRIYEWKTEEEPDVERYRA----QLFLYGLIASR 1108


>gi|302546670|ref|ZP_07299012.1| RecB family exonuclease [Streptomyces hygroscopicus ATCC 53653]
 gi|302464288|gb|EFL27381.1| RecB family exonuclease [Streptomyces himastatinicus ATCC 53653]
          Length = 306

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 72/255 (28%), Gaps = 29/255 (11%)

Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                  P   +  + S S     +  P     R I KL              RGT+ H 
Sbjct: 8   PEQADGAPQSGRAASLSPSRAADFMRCPLLYRFRVIDKLPEK-----PSAAATRGTVVHA 62

Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHF-------------EKENLPPHIDIIWRHLFH 861
           ++  L      + T      M                     E     P     W     
Sbjct: 63  VLERLFDAPAAERTAPRARAMVPGEWERLVAAKPELAELFQGEDGAESPERLSEWLAGAQ 122

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
           K+   +   E+  +  +E     +  + A+ES G+ L G  DR+D+  +G V I DYKTG
Sbjct: 123 KLVEGWFSLEDPTR--LEPAERELFVETALES-GLTLRGIIDRVDIAPTGDVRIVDYKTG 179

Query: 922 DNPKKETAQKLIDP-QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
             P            Q+   A  L       +       L  + L     +     ++  
Sbjct: 180 KAPAP--QYAGEALFQMKFYALVLWR-----LRGAVPRRLQLVYLGSGDVLTYDPVERDL 232

Query: 981 YSADELSEKSLKNLI 995
              +       + + 
Sbjct: 233 LGVERKVLALWEAIR 247


>gi|319440135|ref|ZP_07989291.1| hypothetical protein CvarD4_00055 [Corynebacterium variabile DSM
            44702]
          Length = 914

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 98/837 (11%), Positives = 218/837 (26%), Gaps = 69/837 (8%)

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                    A   A ++ +     G    AG +      AR +    +    A   P    
Sbjct: 48   LDRSTRIAAYRSALSQVVATAAPGSWPAAGFSHDPWTVARELFAWRDQLVSAGWNPTDTA 107

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
               T     +  +   +  +   ++  P  +L  +   L     +        + +    
Sbjct: 108  GTDTPERLGVLVRVEALLPTTAGWAPGPADTLRTIDTTLADLVTNGTDWPLGIDAVALDH 167

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
             V     L            +           +++ ++ AD E + A ++A  L      
Sbjct: 168  PVNDLPPLWRRILSNLTALGVPVAELPEPAPLTELTVLTADTEWDAAPAVARLLTDLEAA 227

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
             K  + L      L  R  L L    + +      PL+  +   +      A+   +D  
Sbjct: 228  EKHHTVLAGRSTQLLDRELLRLGETPVGVRARGVSPLAQVIPVFL-----RAVTAPHDVS 282

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALR-GNKNSYDIMDLKSLVLDRIATQKNNT 503
            A+A L+   +        +          +      +           V   +A+     
Sbjct: 283  ALADLLNVTVPGIDEHSSFPLLPGALRRTLIDALNQEPGVGGPAWTEAVATTLASADPED 342

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
             +   +         L              L              +        +  + +
Sbjct: 343  ALSVREFDELLRLTPLTDDNGIDTSLVTEHLSWLARQFQRFSRENNEPARVTALIGTVSS 402

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
            +       +     ++    ++      +   +    + +     +            ++
Sbjct: 403  LVTGLGSTVSAHELDQVVAEVTGTGGLRVHAEASATRDTVTSPGQLGTGTAPVLWWLPVD 462

Query: 624  KSSTLF-ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
            +  ++  +L   ES  L    ++L            ++   L R  +    L        
Sbjct: 463  EHRSVRDLLRPAESAWLENAGVVLPDPESLARLTLRSELRALRRRRKVTAVLPARIDGER 522

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                         H   T  + +          L R       D   + ++      D  
Sbjct: 523  ----------AAEHAALTFLIND----------LPRKADTTFDDLQKSTREVATLPDDRA 562

Query: 743  RKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
               D      P              P   S+S+ ++L+  P      R L +        
Sbjct: 563  HVPDTLEFCIPDPVSRTVTGGEHLIPTRISYSQWEKLLVHPLEWLLDRRLGIRAGGLVDV 622

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEI------NHLMKQIIDSHFEKENLPPHIDII 855
                   GT  H  +  ++ +R+++N  +        H + + +++          +   
Sbjct: 623  PTGNRMVGTWLHATVENIVNRRLDENGGDPVTVYVTAHEVTEELEALLPAFASELALPGR 682

Query: 856  WRHLFHKISHS-------FLEHEEKIQSSIEKIFVNIPAKMAI------ESIGIHLTGFA 902
             R     I+ +       F   E    + I    V    +  +      +   + L GF 
Sbjct: 683  SRDRGATIALAVRSITGLFTALE---GAGIRVRAVEAEFETTLTGSHGRDGAPLVLGGFR 739

Query: 903  DRIDLLKSGFVDITDYKT--GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
            D   ++  G   + D K        ++        QL++ AA+L   + + +    VA  
Sbjct: 740  DMDVIMADGTDGVIDLKYTFAKKKYRDAVANGTALQLAVYAASLATPA-AHLADVPVA-- 796

Query: 961  FYIRLKQKFKIDCITN-------------DKKKYSADELSEKSLKNLIEIVTLLQNG 1004
             Y  L                        D    +ADEL ++++  L  I+  L+ G
Sbjct: 797  -YFSLHDDLLHTADPRFGLGEDTLDVSVADGGAPTADELGDRAVTGLNRILDDLRAG 852


>gi|71906186|ref|YP_283773.1| ATP-dependent DNA helicase UvrD [Dechloromonas aromatica RCB]
 gi|71845807|gb|AAZ45303.1| ATP-dependent DNA helicase UvrD [Dechloromonas aromatica RCB]
          Length = 713

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 72/688 (10%), Positives = 164/688 (23%), Gaps = 126/688 (18%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           V     T +A +E+ +    +     +      I +   +      A    +      + 
Sbjct: 55  VLAVTFTNKAAKEMTARLSSLVPINVRGMW---IGTFHGLCNRLLRAHFREAG-----LP 106

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
              ++L+ A  + + +  L ++  D     P              + L   I+  + +  
Sbjct: 107 QTFQILDSADQLAMVKRLLKNLNIDDEKYPP--------------RELCHFINAHKEQGV 152

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA---LMRAEAEH 221
                 A + E Y  +     +        +  +             +    L++     
Sbjct: 153 -----RAAQAEAYDNYTQKRVE----IYAEYENQCNREGVCDFAELLLRCYELLQRNEPL 203

Query: 222 LMK--GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I++     +       +  +A    GA +    D       +      + 
Sbjct: 204 RAHYQQRFRQILVDEFQDTNVLQYAWLKLLAG--GGAHIFAVGDDDQSIYRFRGAEVGNM 261

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +   +          +  L+        +   +N +   +               
Sbjct: 262 REFERDYAGAN---------VIRLEQNYRSHGNILAAANAIIKNNR-------------- 298

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--SALITADRN 397
              + L   +         +   EA ++ +EA  I   +R  + +       A++     
Sbjct: 299 ---ERLGKNLWTDAGDGEPIRAFEAYSDLDEARFIVEEIRELVRDGNSPTQIAILYRSNA 355

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++ EL   G+   +  G+            + L  +   +D  A   +V  P    
Sbjct: 356 QSRVLEHELFTKGVPYKVYGGLRFFERQEIKHALAYLRLLGNQDDDTAFLRVVNFPTRGI 415

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G       +A       +L                                         
Sbjct: 416 GARSLENLQATAHQINSSLYN--------------------------------------- 436

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT--CLQNVCLDEHRKLPNL 575
             A  L     Q +   V           NL + +  +  V    L      E      L
Sbjct: 437 -AAASLTGKAGQTVGAFVRLIETLRQETANLPLPEIIEHVVEKSGLAQHYRVEKEGQERL 495

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +E    ++ F           A        +             E    + ++    
Sbjct: 496 ENLDELINAAATFVDDEGAIGEGGA----LASFLAHASLEAGEHQAGEGQEAVQLMSVHA 551

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L FD + + GL +G                  +      E+           A    
Sbjct: 552 AKGLEFDVVFISGLEQG----------LFPHENSVNEGKDGLEEERRLMYVAVTRARQRL 601

Query: 696 HLIY--TRSLRENNIPTIASRWLQRLLV 721
           ++    TR L       + S +L  +  
Sbjct: 602 YVSCAQTRMLHGQTRYCVPSSFLDEIPE 629


>gi|327474835|gb|EGF20240.1| exonuclease RexA [Streptococcus sanguinis SK408]
          Length = 1224

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 99/958 (10%), Positives = 234/958 (24%), Gaps = 123/958 (12%)

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            +L  +      + +  +  +   +  + +L               ++ K++  +   +  
Sbjct: 276  ALTALAGLNELSPIEETAQVLKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRK 335

Query: 140  ISPANAIWLAKNLA--DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                      + L   D I+  + E     +L                DF+   ++ + E
Sbjct: 336  PMIERLRSFDQQLYQMDFIEQHQDECLPLVEL--------------LRDFVADFAQAYLE 381

Query: 198  RLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            R    NA          +          H  +     +++     +     R++  ++  
Sbjct: 382  RKKVENAFEFGDISHFAIEILETFPEVRHFYQERYHEVMVDEYQDTNHTQERMLDLLSR- 440

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDI 305
              G       D       +     +  +            Q             L+ L+ 
Sbjct: 441  --GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKLIVLKENFRSHLEVLEA 497

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA- 364
              +  KRL +        +         P   +    +     I    K   +    E  
Sbjct: 498  TNDVFKRLMDEEVGEIDYNETHYLVAGNPSKREPNPANRASFLIYEGSKESPEEEADEGL 557

Query: 365  --DNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGI 419
                   E   +   +    +E     K   L+TA R     +     ++ I +    G 
Sbjct: 558  PQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLILAAFEQYQIPLVPDDGA 617

Query: 420  P-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL---VA 475
                 ++   ++   L  I    +  A+  L+K P+  FG  E      + + E      
Sbjct: 618  ANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQERSQENL 677

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI---LQCIT 532
                 N+     L   ++ +   +K        Q   +         L+  I        
Sbjct: 678  YEKLLNALQGRGLHPALITQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQDRFYYD 737

Query: 533  PLVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             + T            ++S    +   +  + +          L  + +    S   +  
Sbjct: 738  MVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIRMIDRILENQHDL--ASVPVAAP 795

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL--LNFDTLILGGL 649
             +    +  +  + ++     +         + SS+  IL   +        D  +    
Sbjct: 796  KDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVSVEE 855

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA--------NGTRHLI--- 698
            +        + +    +    +L L +  + +         A         G++ ++   
Sbjct: 856  SYAPNQLRISMDTLPYQQNLVELQLASLSEQMRLLYVAMTRAETKLYLIGKGSQEVLDKR 915

Query: 699  ---------YTRSLRENNIPTIASRW-----------LQRLLVLGGTDFFDNLKKR-GQC 737
                      + SLR          +                 +   +       R  + 
Sbjct: 916  QWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRINEP 975

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAV--YARRILKLD 794
             L     L    +     R         +  +   S I+   +  P  +  +   I+  D
Sbjct: 976  VLFPADDLADNRQSDDILRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIMDTD 1035

Query: 795  FIPHFKKDPDRT-------------------DRGTLFHNIITELIKKRINKNTPEINHLM 835
             +    +                          G+  H ++  +            + L 
Sbjct: 1036 GLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSRPSMAVLRSALA 1095

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM----AI 891
            +   D   + +   P I   +     ++             + +++    P  M      
Sbjct: 1096 QVQADEAVKNQIQLPKIASFFETDLGRLL----------IENSDRVRREAPFAMLKRDDD 1145

Query: 892  ESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
                  L G  D   +       + + DYKT               QL L A AL   
Sbjct: 1146 SGQEFVLRGILDGYLLFED---RIILFDYKTDKYKDSSELIARYHGQLDLYAQALSHS 1200


>gi|297161878|gb|ADI11590.1| RecB family exonuclease [Streptomyces bingchenggensis BCW-1]
          Length = 266

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 68/232 (29%), Gaps = 27/232 (11%)

Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
            P     R I KL              RGT+ H ++  L      + T      M     
Sbjct: 3   CPLLYRFRVIDKLPEK-----PSAAATRGTVVHAVLERLFDAPAAERTAPRARSMVPGEW 57

Query: 841 SHFEKENLP-------------PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
               K                 P     W     ++   +   E+  +  +E     +  
Sbjct: 58  ERLLKARPELTELFRTEDGAEEPERLEQWLADAERLVEQWFSLEDPTR--LEPAERELYV 115

Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
           +  +E  G+ L G+ DR+D+  SG V I DYKTG  P           Q+   A  L   
Sbjct: 116 ETKLEG-GLTLRGYIDRVDVAPSGEVRIVDYKTGKAP-APQYAAGALFQMKFYALVLWR- 172

Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
               +       L  + L     +    ++    + +       + + + + 
Sbjct: 173 ----LRGAVPRRLQLVYLGSGDVLTYDPDESDLLAVERKVRALWEAISQAME 220


>gi|260205407|ref|ZP_05772898.1| hypothetical protein MtubK8_13997 [Mycobacterium tuberculosis K85]
 gi|289574798|ref|ZP_06455025.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539229|gb|EFD43807.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
          Length = 278

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 67/248 (27%), Gaps = 21/248 (8%)

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
              P         S S        P     R I +L              RG++ H  + 
Sbjct: 2   ADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPE-----ATSAAQLRGSVVHAALE 56

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENL------PPHIDIIWRHLFHKISHSFLEHE 871
           +L        +P+    + Q                  P            +   +  + 
Sbjct: 57  QLYGLPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGY--YR 114

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
            +  +  +        ++ +    + L G+ DRID+  +G + + DYKTG  P    A  
Sbjct: 115 LEDPTRFDPQCCEQRVEVELADGTL-LRGYIDRIDVAATGELRVVDYKTGKAPPAARALT 173

Query: 932 LID--PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
                 Q+   A AL               L  I L     +D   +  +    ++    
Sbjct: 174 EFKAMFQMKFYAVALFRS-----RGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMA 228

Query: 990 SLKNLIEI 997
             + +   
Sbjct: 229 IWRAIQSA 236


>gi|226226951|ref|YP_002761057.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
 gi|226090142|dbj|BAH38587.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
          Length = 820

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 70/680 (10%), Positives = 167/680 (24%), Gaps = 107/680 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R+   +  G +   +    +   +                 P+  
Sbjct: 75  EILAVTFTNKAAGEMRARIAKFLGHEPKGM-WCGTFHALGARMLRG--------VAPLVG 125

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            ++   +             + +        +            K +   I   +     
Sbjct: 126 REQNFTIYDEDDAIGAVKRVMERRNLSPKEFAP-----------KAILSAISSAKNALIS 174

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
             +      + +          L++A +       +     PV   +    A   H  + 
Sbjct: 175 PSEFARNARDTFATAVAGVYTDLEVALQQANAVTFDDLLVLPV-RALETDEALRAHYQR- 232

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
               +++     +  A  R +  +       +V+   D       W     ++      +
Sbjct: 233 RFRYLLVDEYQDTNAAQYRFVQLMGGGYRNVMVV--GDDDQSIYGWRGADIRNILDFERD 290

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                 P   + +L +        +     V  E   R     ++  P            
Sbjct: 291 F-----PGARIVRLEENYRSTPNVLALANAVIAENTERRGKTLRATRP------------ 333

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKKKSALITADRNLARRV 402
                        V LIEA +ER+EA  IA  +       D  ++  A++      +R +
Sbjct: 334 ---------AGEAVTLIEALDERDEADFIAETILTRMSRSDLARRDCAILYRTNAQSRAI 384

Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
           +    R  I   +   +          L + L  +    D  A    V  P    G    
Sbjct: 385 EDAFRRRNIPYRLIGAVRFYDRREIRDLMAYLKLVANPADDEAFRRAVNVPKRGLGDATI 444

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
            L       E     G            L   R A +                       
Sbjct: 445 ALLA-----EQAIAEGKPMLEMATRFDVLSGMRPAARA---------------------- 477

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
                   +           +   + ++ +  +  V  ++            L   E  +
Sbjct: 478 -------ALEDFGNLVQRLRTMAVDAAVDELLRELVQVIKYADHLRAEGPEGLERIENVR 530

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
            + +  ++++      +         +        V      +  +  +    ++ L F 
Sbjct: 531 EMIAGAAEVVADEGG-EVGLTPLDHFLQSSTLVAGVDKLDPNADAVTCMTMHNAKGLEFP 589

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTR 701
            + + GL +G++P   A               +   +   +    +         L  T 
Sbjct: 590 LVFVCGLEDGLFPLARA--------------AEDPAQLEEERRLFYVGITRAEEKLYLTC 635

Query: 702 SLRENNIP----TIASRWLQ 717
           + +         ++ SR+L+
Sbjct: 636 AEQRRRNGELMYSMPSRFLE 655


>gi|145589895|ref|YP_001156492.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048301|gb|ABP34928.1| ATP-dependent DNA helicase UvrD [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 787

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 70/760 (9%), Positives = 184/760 (24%), Gaps = 108/760 (14%)

Query: 47  VTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           V     T +A +E+      +     +      I +   +      A    +      + 
Sbjct: 63  VLAVTFTNKAAKEMMVRLSAMLPINTRGMW---IGTFHGLCNRLLRAHHKEAG-----LP 114

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +  ++L+    +   +  L  +  D     P              K L   I   +   +
Sbjct: 115 STFQILDTQDQLSAIKRLLKGLKVDDEKYPP--------------KQLQYFIAHAKERGQ 160

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
           + +DL        G  +      L      + E+             +            
Sbjct: 161 RAKDLA------VGDDFQAKMAQL---YGAYDEQCQREGVVDFAELLLRSYELLKHSEPI 211

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI---------VLPGLDCHIPTAI 270
               +     I+I     +       +  ++ H    +         V    D       
Sbjct: 212 RTHYQERFRHILIDEFQDTNALQYAWLKLLSGHDASRVNVSGMGTSAVFAVGDDDQSIYA 271

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
           +     ++  +                 LL  L+        + + +N +   +      
Sbjct: 272 FRGADVENMRLYEK----------QFHPLLVKLEQNYRSHGHILDTANHLIANN------ 315

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKK 388
                      ++ L   +         V + +A ++  EA  +   ++  ++    + +
Sbjct: 316 -----------SERLGKNLRTDAGHGEPVRIYDAPSDHAEAAWLVEEIKALVNSGIKRTE 364

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            AL+      +R ++  L    I   +  G+            + L  +   ND  + + 
Sbjct: 365 IALLYRSNAQSRIIEHNLFSAAIPYRVYGGLRFFERAEIKHALAYLRLLENPNDDTSFSR 424

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
           +V  P    G       +     +                    L   A+          
Sbjct: 425 VVNFPTRGIGARSIEALQDAARAQQC-----------------SLYSAASSLEGKAGATL 467

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
              +   D        + + + +  ++ +              D  +     +       
Sbjct: 468 GGFIRLVDHMREATRHNTLPETVEFVIQHSGLIQHYLSEREGQDRVENLQELINAATAFI 527

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
             +         G+  ++           ++ +       ++                 +
Sbjct: 528 AEEGY-------GQDAAAAMLPGENAPGVVEVSP--LAAFLSHASLEAGDNQAQAGQDAV 578

Query: 629 FILGTLESRLLNFDTLILGGLNE--GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            ++    ++ L F  + + GL E       +  +   L    +      T  K     +H
Sbjct: 579 QLMTVHSAKGLEFTAVFITGLEEGLFPHENSINEQDGLEEERRLMYVAITRAKERLYLSH 638

Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                    H     ++    +  + S  L+ L        +    + G  + D   +  
Sbjct: 639 TQSRML---HGQVRYNMPSRFLEELPSDSLKWLTPKAKDARWGGNSRSGSTWQDGYTRQR 695

Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                  +           +  + S  E+K+L + P   Y
Sbjct: 696 EYESNDFFDSGSERQRPVKRVGSAS-MEVKRLASPPRGDY 734


>gi|304408644|ref|ZP_07390265.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS183]
 gi|307305473|ref|ZP_07585221.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica BA175]
 gi|304352465|gb|EFM16862.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS183]
 gi|306911776|gb|EFN42201.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica BA175]
          Length = 1270

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 90/799 (11%), Positives = 201/799 (25%), Gaps = 118/799 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVT----IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
             L  +       PL  A +     I V +      LR E  +  G  + +      L  
Sbjct: 11  EVLCAHLAAYLTQPLAFARLLSNEHILVQSPGMSTWLRLEIAKQNGIAAALE---FPLPS 67

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
               +   DLL     +   +      +L +L+              Y  + L    +  
Sbjct: 68  SFTWQLCHDLLPDVPKDNAFTKAAMTWKLMQLLPRMLQDDAFGPLRHYLGNTLENTPTIN 127

Query: 144 NA------------------IWLAKNLADIIDIIETEEKKW----------EDLHALKNE 175
            A                    L   +ADI D        W          + L    N+
Sbjct: 128 TADTSEHLNTSDMTADDIKLYQLCGRIADIFDQYLVYRPDWILAWEQNEHPDSLTKPLND 187

Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--AEHLMKGTKGPIIIA 233
                W         A   +    +  +          L+ A    + L+      + + 
Sbjct: 188 DQR--WQPILW---RALIAFNRDELNQSHYHRANLHSDLIAALNNPDTLLAKLPQRLFVF 242

Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA----------IWNTITEKSTNITS 283
           G +   P T  ++  +A   +  ++      H                    ++      
Sbjct: 243 GISSMAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAELW 302

Query: 284 SNTTYSTHPQYSL-----AKLLDFLDIKREDVKRLGNV---SNEMYGRSMVISKSFLPPD 335
            +     +P  +       +LLD L     +    G+           S     S L   
Sbjct: 303 EDKLEVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNSPHSHASMLHGV 362

Query: 336 TSDMRNTDILENKIPNIQ-------------KCFSDVALIEADNEREEAISIAIALRMSL 382
             D+     L+  +                 +    + +    +   E  ++   L   L
Sbjct: 363 QYDILEMQTLDRVLGPDAELYQNVENRRLLKRDDESIRVKSCHSPLREVETLHDHLLELL 422

Query: 383 ----DENKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSL 433
               D   K   ++  D          +         I   I+       +   +   +L
Sbjct: 423 SNDVDLTPKDIVVMMPDVAAYAPYIDAVFSAKQGLHYIPYAIADRGAAQESPLINSFLNL 482

Query: 434 LNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDI--MDLK 489
           L           I ++++ P  L +F   +  L   +  L+   +R  ++        + 
Sbjct: 483 LGINQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRDEQSRLKQGVP 542

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELA------VLLVDHILQCITPLVTYKTNKNS 543
           +   +  A       + +  S  +   ++              + + +  +         
Sbjct: 543 AFEQNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQALGKLLNFIEVLDETAQI 602

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG-------- 595
                  +         L      +  +   L  +E    +++L  +++  G        
Sbjct: 603 LALPQVGALRLAELTELLDAFYDTDEDEREQL--QEIRDAIAALEQELLSAGKPLDTNSL 660

Query: 596 -------------SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
                        S +  +         + +    V  +     ++     +  R + F 
Sbjct: 661 DTSMFVTLAQQNISGLSLSIEVLQQWFNQRLTESRVGQRYLAG-SVNFCTLMPMRSIPFK 719

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
            + L G+N+GV+P+      F             + +   +      + +    L  +  
Sbjct: 720 IVCLLGMNDGVYPRVQHPVGFDLMAHFGARKGDRSRRLDDRYLFLEALLSAREQLYISYI 779

Query: 703 LRE--NNIPTIASRWLQRL 719
            R   +N   IAS  +  L
Sbjct: 780 GRSERDNSERIASMLVSEL 798


>gi|89896637|ref|YP_520124.1| hypothetical protein DSY3891 [Desulfitobacterium hafniense Y51]
 gi|89336085|dbj|BAE85680.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 760

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 81/745 (10%), Positives = 189/745 (25%), Gaps = 105/745 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVV 85
             L     +     +    +     T +A QE+R     + G   +      + +     
Sbjct: 39  RVLTYRIAHLIAQGVEPWHILAITFTNKAAQEMRDRVYSLVGSEGRGLW---VATFHSAC 95

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                +++      +          +LA LI     +L    K   P             
Sbjct: 96  VRILRSEIGYLPGYSRSFVIYDSGDQLA-LIKSCMKELNLDEKKFAPR------------ 142

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
                 +  +I   + +    ED      + +               + + ++L+  NA 
Sbjct: 143 -----AIEAVISDAKNKLLTPEDFSRRAKDYFEQKAER-------VYELYQKKLLANNAL 190

Query: 206 SPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                 +  +R   E+       +     I++     +  A   L++ +A       V+ 
Sbjct: 191 DFDDIIMLTVRLFRENPEVLSQYQDKFRYILVDEYQDTNHAQYALVNLLAKKYRNLCVV- 249

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D      ++     ++            +P+    KL       +  ++   +V    
Sbjct: 250 -GDDDQSIYMFRGADVQNILDFE-----RDYPEAKTLKLEQNYRSTKSILQAANSVVQNN 303

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
             R                      E  +    +    +    ADNE +EA  +   ++ 
Sbjct: 304 RSRK---------------------EKSLWTENEDGQPIVYYVADNEHDEARYMGERIQR 342

Query: 381 SLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
            L+   +   + A++      +R ++    + GI   I +G+     +    + + L  +
Sbjct: 343 LLNVEGRKFNEFAVLYRTNAQSRVIEERFMKEGIPYRIFSGLKFYERMEIKDILAYLRIL 402

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
               D ++ + ++  P    G            LE +    N+    ++D          
Sbjct: 403 HNPADQVSFSRVLNVPKRGLGEST---------LEKILDYANEQEMPVLDAIMEADYIPE 453

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
            Q          + L +E + LA             L       N        ++     
Sbjct: 454 LQSRAKKPLLAFAHLMQELRALAAAESSVTKLVEEVLKRTGYWDNLVSDKSPEAE--ARL 511

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               + + +          +E                     A        + ++     
Sbjct: 512 ENLREFLSVTAEYDEKADNYETAVVQ-----------EGIEDALVPGLAGFLEQVSLVAQ 560

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
           +    +    + ++    ++ L F  + LGG+ E           F S     D  L   
Sbjct: 561 IDSLDQADDAVVMMTIHSAKGLEFPVVFLGGMEE---------GIFPSSRSMLDPVLLAE 611

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKK 733
           E+ +   A    +      L    + +            S + Q +      D       
Sbjct: 612 ERRLCYVA----ITRARERLYLAYAQQRMLYGRTQYNRPSEFFQEIPTHVLVDRDPIDPP 667

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPK 758
             +     +              P 
Sbjct: 668 PTRAQKAHSATARPAATPSGGPSPW 692


>gi|146293206|ref|YP_001183630.1| exodeoxyribonuclease V subunit gamma [Shewanella putrefaciens
           CN-32]
 gi|145564896|gb|ABP75831.1| exodeoxyribonuclease V, gamma subunit [Shewanella putrefaciens
           CN-32]
          Length = 1226

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 85/786 (10%), Positives = 191/786 (24%), Gaps = 100/786 (12%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   L    R    N  LL S  I V +      LR E  +  G  + +      L   
Sbjct: 12  VLCAHLAAYLRQSVPNTRLLRSEHILVQSPGMSTWLRLEIAKQNGIAAALE---FPLPSS 68

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL-------------- 130
              +    LL +       +      +L +L+                            
Sbjct: 69  FTWQLCHHLLPNVPKENAFTKAAMTWKLMQLLPRLLADDAFGPLRHYLGDLSLHTLGNIN 128

Query: 131 -YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW-------- 181
              E     P        L   +ADI D        W     +   +             
Sbjct: 129 GLDELAHQRPADDIKLYQLCGRIADIFDQYLVYRPDW-----MLAWEQNQHPTTLNKPLN 183

Query: 182 --LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTG 237
                   L  A   +    +  +         AL+ A  +    +      + + G + 
Sbjct: 184 EDQRWQPILWRALVAFNRDELNQSHYHRANLHSALIEALNDPNTSLTPLPQRLFVFGISS 243

Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTA----------IWNTITEKSTNITSSNTT 287
             P T  ++  +A+  +  I+      H                    ++       +  
Sbjct: 244 MAPQTLEVLYHLASRIDVIILSLSPCQHYWGDIIDPRHRARMAVQYAGKRQLAEQWEDKL 303

Query: 288 YSTHPQYSL-----AKLLDFLDIKREDVKRLGNV---SNEMYGRSMVISKSFLPPDTSDM 339
              +P  +       +LLD L     +    G+                 S L     D+
Sbjct: 304 EVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNDPASHASMLHGVQYDI 363

Query: 340 RNTDILENKIPNIQKCFSDVALI-------------EADNEREEAISIAIALRMSLDENK 386
                L++ +      + ++A                  +   E  ++   L   L  + 
Sbjct: 364 LEMQTLDSVLGPDAALYQNIAARRILKKDDESILVKSCHSPLREVETLHDHLLDMLSRHP 423

Query: 387 K----KSALITADRNLARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAI 437
           +       ++  D          +             I+       +   +   +LL   
Sbjct: 424 QLSPKDIVVMMPDVAAYAPYIDAVFAAKQGLHYIPYAIADRGAAQESPLINSFLNLLGIN 483

Query: 438 FKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGNKNS--------YDIMD 487
                   I ++++ P  L +F   +  L   +  L+   +R  ++              
Sbjct: 484 QSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRDQQSRLKQGVPAFEQ 543

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                  +               +       +       + + +  +      +      
Sbjct: 544 NSWAFGIKRLILGYALSDDAPLYQDHLVVTGIEGQSAQALGKLLNFIEALDETQQILEKP 603

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNL------------WFEEEGKTLSSLFSKIIETG 595
            + +       T L      +  +   L                 GK + +L +   +  
Sbjct: 604 QTGAVRLMELTTLLDAFYDTDEDEREQLQDIRDAIATLEQELLSAGKPIEALSTAQADIA 663

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
           + +  +         + +    V  +     ++     +  R + F  + L G+N+GV+P
Sbjct: 664 TSLTLSIEVLQQWFNQRLTESRVGQRYLAG-SVNFCTLMPMRSIPFKLVCLLGMNDGVYP 722

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIAS 713
           +      F             + +   +      + +    L  +   R   +N   IAS
Sbjct: 723 RVQHPVGFDLMAHFGPRKGDRSRRLDDRYLFLEALLSAREQLYISYIGRSERDNSERIAS 782

Query: 714 RWLQRL 719
             +  L
Sbjct: 783 MLVSEL 788


>gi|226365048|ref|YP_002782831.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4]
 gi|226243538|dbj|BAH53886.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4]
          Length = 827

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 84/730 (11%), Positives = 189/730 (25%), Gaps = 80/730 (10%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +        + P     +     T +A  E+R     + G ++  +  + +  
Sbjct: 60  TAVLTRRIAYLLAERGVMP---GQILAITFTNKAAAEMRERVAHLVGPRANSM-WVSTFH 115

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                   A   L   LN   S                  + D        + +S  ++ 
Sbjct: 116 SSCVRILRAQAALLPGLNSNFS------------------IYDADDSRRLLTMISKDLNI 157

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
               + A+ LA  I  ++ E    E   A  ++            +     ++ +RL   
Sbjct: 158 DTKRYSARLLATHISNLKNELVDPEQASADADKDPAE----LPRLIAKVYGHYQQRLRSA 213

Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG-- 255
           NA          +             +     +++     +  A   L+  +        
Sbjct: 214 NALDFDDLIGETVAMLQAFPQVAEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGSTADGE 273

Query: 256 --------AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
                   A +    D       +   T ++            +P      L       +
Sbjct: 274 DADHRVAPAELCVVGDADQSIYAFRGATIRNIEEFE-----RDYPDARTILLEQNYRSTQ 328

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
             +    +V ++  GR                      E ++         +    ADNE
Sbjct: 329 NILSAANSVISKNTGRR---------------------EKRLWTDSGEGELITGYVADNE 367

Query: 368 REEAISIA---IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            +EA  +A     L  S D      A+     N +R ++    R G+   +  G+     
Sbjct: 368 HDEASFVASEIDKLVDSGDAKFGDVAVFYRTNNSSRALEEIFIRLGVPYKVVGGVRFYER 427

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                + + L  +   +D +++  ++  P  +          A ++ +            
Sbjct: 428 KEVRDIVAYLRVLANEDDTVSLRRILNTPR-RGIGDRAEACVAVHSEQRGISFAEALRDG 486

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                 L+  R      +        R+    +  A  +V   L  I  +V     +   
Sbjct: 487 GEGRVRLLNTRSQKAIASFLELMDGLRVLMPPETTADDIVPDQLGDIGDVVEAVLERTGY 546

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
              L+ S   +          L    +  +         +       ++           
Sbjct: 547 RAELAASSDPQDGARLDNLNELVSVAREFSSDARNAAGLVEPPEDGDVDARDGEPDPGSL 606

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
              +    +  ++ +        + ++    ++ L F  + + G  +G +P   A     
Sbjct: 607 AAFLERVSLVADSDQLPDNDEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPT 666

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
               +  L      +   +       A         RS     I    SR+LQ +     
Sbjct: 667 ELSEERRLAYVGITR--ARQRLYLTRA-------VMRSAWGQPIQNPESRFLQEIPSDLV 717

Query: 725 TDFFDNLKKR 734
               ++   R
Sbjct: 718 HWRREDPGPR 727


>gi|229814924|ref|ZP_04445262.1| hypothetical protein COLINT_01967 [Collinsella intestinalis DSM
           13280]
 gi|229809411|gb|EEP45175.1| hypothetical protein COLINT_01967 [Collinsella intestinalis DSM
           13280]
          Length = 1009

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 85/793 (10%), Positives = 188/793 (23%), Gaps = 75/793 (9%)

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            +V    D      +       S                    + D   +    ++ L  
Sbjct: 158 CLVRAYADMLAARGLVEASEAASVLAGLVGDGAPAC--ARFVAVRDVPRLPGHVMRLLRA 215

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
           V+       ++           D     +  +      +   D   +E         + A
Sbjct: 216 VAGAGEVALLLNPDQRSLASELDASIETVGLDDGHPASRFQGDPEFLEVAGPHARGAAYA 275

Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
            AL   + + +           +   V   L   GI+ + +       T       +L +
Sbjct: 276 SALADLVGDGRDVVVAAARPSEVFEEVSPRLAARGISSECTLAARFGQTAVGRQFAALSD 335

Query: 436 AIFK-------------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
            + +                   +A  +  PL+        +   K              
Sbjct: 336 VVARMKDAGEDPERAATWWPAPELADWLYSPLSGMDSNSARMFDKKIRSNRSLTPEAVLR 395

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLS------EEDKELAVLLVDHILQCITPLVT 536
                       R  + ++  +        S      +E    A+  +  +   + P   
Sbjct: 396 TLQSYQSQTTTKRQRSDQSKPYAQVPAVCASVVSYLWQERPVSALKAICAVAGALPPSAF 455

Query: 537 YKTNKNSTCGNL--SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
              + +   G      +   +        + + +   +  L          +  +    T
Sbjct: 456 GWRDGSVRAGVEVSMAAKAIETLTDVAHELDVCQSAAVTVLDGLTVSARRRTESTDFAHT 515

Query: 595 GSCIKANAIEWIDII---TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
           G    A+      +      L+   +V         +                   G   
Sbjct: 516 GYEGDADMPCVRFMTLAEAALLPAGSVDAVFVADVDVDNFPLSHEEGALATLAAKLGAAS 575

Query: 652 GVWPKNTA-KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP- 709
                    ++ F   +  +      A     + A D   A        T ++R      
Sbjct: 576 MELEPAARLRDLFDRALAAARSRAVLARVTHDRQAKDRYPA--AMWTELTAAVRAAGRVV 633

Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
           T+ S     +     T     LK+R    L      +   +     +  P  P    PR 
Sbjct: 634 TVTSVGEGDIAADLDTAAGMGLKRRRVACLPPQELGEDAIRHLVLYQRDPNDPSRLVPRQ 693

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-- 827
            S S+I+  +  P   +    ++              ++G   H+++  L  +   +   
Sbjct: 694 LSASQIEGYVTCPLCWFMSSRVR---PQSLDAGFGNMEKGNFVHDVMYRLHAELTEEGVP 750

Query: 828 --TPEINHLMKQIIDSHFE---------------KENLPPHIDIIWRHLFHKISHSFLEH 870
             TPE   +  + +   F+                      ++ +          + + +
Sbjct: 751 RVTPENLEVCLEKLRDVFDCVRAEHARNKTSSSAALVAHSALEHVQVDEILPQLEAVVRY 810

Query: 871 EEKIQSSIEKIFVNIPA-KMAIESIGIHLTGFADRIDLLKSGFVDITDYK---------- 919
           E    +     ++      + +E  G  L G  DR+D+   G   + DYK          
Sbjct: 811 EAGALAPFAPAYLEYSFNGLGVEYAGRPLGGRIDRVDVDVEGRAMVIDYKHRMDVNAFKL 870

Query: 920 ---T-----GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
              T     G  P  +        Q  + A AL+                Y   K     
Sbjct: 871 ADPTVAKRDGVVPADDPDWLPEHTQSLIYAQALRHSEL----ALDARGALYFSTKGGAPA 926

Query: 972 DCITNDKKKYSAD 984
                 ++    +
Sbjct: 927 MRGAVSEEFVEVE 939


>gi|159030780|emb|CAO88458.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 773

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 83/741 (11%), Positives = 201/741 (27%), Gaps = 128/741 (17%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP---IIKSLG 82
           L   +    R+  ++P    ++     T +A +E+++   +   ++         ++ L 
Sbjct: 40  LTYRIAHLIRHHGVDPE---NILAVTFTNKAAREMKTRIEKTFAQQKAQENYGQRLELLE 96

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
           +  ++K  + +  +Y     +     L    R++    NK  D     +  +   +  S 
Sbjct: 97  EYEQKKLFSQVYRNYTKKLWIGTFHSLC--GRILRYDINKYQDEYGHSWQRNFSIMDESD 154

Query: 143 ANAIW---------------LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
           A ++                 A+NL   I   +       D        +          
Sbjct: 155 AQSLVKNIVTKQMNLDDKKFDARNLRYAISNAKNLGLTPGDYARENP-HFRG------KV 207

Query: 188 LKIASKYWTERLVELNASSPVG------YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
           +    + +  +L + NA                  +   +        I++     +   
Sbjct: 208 ISEVYQAYQMQLAQNNALDFDDLILVPVRLFQQNESILGYWHT-QFKHILVDEYQDTNRI 266

Query: 242 TARLMSTVANHPN---------GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
              L+  ++ +              +    D       +            ++       
Sbjct: 267 QYELIRLLSTNGETKKSEWNWTDRSIFVVGDADQSIYSFRMADFTILLNFQADFGD---- 322

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
                       +  +D + +  +      R  ++  +    +    +N+  ++  +   
Sbjct: 323 -----------GLPDDDTRTMVKLQENYRSRENILQAANKLIE----KNSQRIDKVLVPT 367

Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTR 408
           ++    + + +A +E+EEA  +   +R    EN +      A++      +R  +  L R
Sbjct: 368 REGGEIIYVFKARDEQEEAAFVIDKIREFTQENPELNWGSFAILYRINAQSRPFEDGLIR 427

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
             I  +I  G             + L  I    D +++  ++  P               
Sbjct: 428 NNIPYNIVGGFKFYDRQEIKDAIAYLRVIANPADTVSLLRIINTP--------------- 472

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                   R       I +L     +                     D+     L     
Sbjct: 473 --------RRGIGKTTIDNLLKAAQELGVPL-----------WEIISDETSVNTLAGRAT 513

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE-EEGKTLSSL 587
           + I  L     N      +LS S+     +     +   +H+         E  + L S 
Sbjct: 514 KSINRLAKIIQNLQEKITDLSASEILDKIMEDSGYIDELKHQGTEEADTRIENIQELYSA 573

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
             +  E             + +        +    E    + ++    ++ L F  + L 
Sbjct: 574 VVQFQEENEE-----TNLQEFLASASLASDLDNLQEGQEKVSLMTLHSAKGLEFPIVFLV 628

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL--- 703
           GL +G++P N +              L        +    +      +  L  T +    
Sbjct: 629 GLEQGIFPHNRS--------------LNDPIALEEERRLCYVGVTRAKEQLFLTYAKERY 674

Query: 704 -RENNIPTIASRWLQRLLVLG 723
              N    +AS++LQ L    
Sbjct: 675 VWGNKEMKVASQFLQELPPEL 695


>gi|325676838|ref|ZP_08156511.1| RecB family exonuclease [Rhodococcus equi ATCC 33707]
 gi|325552386|gb|EGD22075.1| RecB family exonuclease [Rhodococcus equi ATCC 33707]
          Length = 301

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 71/240 (29%), Gaps = 22/240 (9%)

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
            +    S S        P     R I +L              +GT+ H  +  L     
Sbjct: 25  PRRLALSPSRAGDFKQCPLLYRFRAIDRLPET-----PSKAQVKGTVVHAALEALFALPA 79

Query: 825 NKNTPEINHLMKQIIDSHFEKENLP------PHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
            +   +    + +        ++        P     +     ++  ++  +  +  +  
Sbjct: 80  GERVADRAKELVEPAWDRVLADSPELAELIGPADRGQFLTDARRLIANY--YRLEDPTRF 137

Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-QL 937
           +     +  +  ++  G+ L GF DR+D+  +G V + DYKTG  P      +     Q+
Sbjct: 138 DPEACELRVETELDD-GVLLRGFVDRVDVSPTGLVRVVDYKTGRAP--WELSESKALFQM 194

Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
              A  L             A L  + L     +     + +    +       + + E 
Sbjct: 195 KFYALVLLR-----TRGVVPARLQLLYLGDGQTLTYDPVEDELLRFERTLSAIWQAISEA 249


>gi|320107768|ref|YP_004183358.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
 gi|319926289|gb|ADV83364.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
          Length = 1189

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 86/822 (10%), Positives = 198/822 (24%), Gaps = 84/822 (10%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAG 234
                 L+ A         E          ++   A            +M      +++  
Sbjct: 366  ALFRLLRNALGELRLVFAEDGECDFTEVSLSAREALRHGNGKGDLAAMMGMRMQHLLMDE 425

Query: 235  STGSIPATARLMSTVANHPNG--AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
               +  +   L+  +    +G    +    D      ++     +      +       P
Sbjct: 426  MQDTSASQYDLLQALTAGWDGSSQTLFLVGDPKQSIYLFREAKVELFLKALTTERLGDVP 485

Query: 293  QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
               L    +F   +R               R   I       +     +           
Sbjct: 486  LSRLVLTSNFRSQERLVKGFNEVFRLLFPEREGEIVYHDATAEVPAQEHELRWHATPLPY 545

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSL-------DENKKKSALITADRNLARRVKLE 405
                   A      ERE+A  IA  L                 +A++   +  A  +   
Sbjct: 546  MDRAQAGA-YNKQREREQAEEIASLLHDWRSRPVSVAKPKASSAAVLVRTKAHASLIMEV 604

Query: 406  LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
            L   GI         L+       + SL  A+    D  A   +   P    G  + ++ 
Sbjct: 605  LAEAGIPYRAVEMERLADRQEVLDVLSLTRALLHPADRTAWLAIFHAPWCGLGLADLHIL 664

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
             A +       +  +    ++  +  +L   +  +         + L +  +   V  V+
Sbjct: 665  AAGDD----PAQAQRPLEQMLPERLKLLSEASRIRAEKTWTILSAALGQRGRMPLVRWVE 720

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
            H    +          +   G+   ++ T+      +         L  L  ++  + L 
Sbjct: 721  HTWHLLGG--------DLCAGSEGSANVTRFFHLLEKMTAQRGEPNLSAL--QDSLQKLF 770

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
            +  +   +    +  +  + ++    ++       +   S+ L             D   
Sbjct: 771  AEHAAAPDAVEILTIHKAKGLEWDLVIVPSLEKTSRRNDSTLLDWAE----FQYEDDLGE 826

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
            +  L       ++ K   L+  ++   N +   +           A    HL  + + ++
Sbjct: 827  ISHLLLAPIQSSSGKPGSLNDFIRGHHNARGEAELKRLLYVATTRARSALHLFASPATKK 886

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK-----QPHYKRPKPF 760
            +N        L           F          L W        +               
Sbjct: 887  DNSVGARRGTLLHAAWPIAEALFAEPAPVPTKLLFWPSSAAEPQEGSGLALAAGAEVAAK 946

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
             P+  + R       + L   P       +  L          +    G   H  + E+ 
Sbjct: 947  RPILRRLRADFDPRERLLATKPEGTANVDLPALPAFQRSGGSLEVRAVGETVHAFLEEVA 1006

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
             +     +           +    + +        +      +S      + +  + +  
Sbjct: 1007 ARVAEDMSEGTAA--NAAFEQEMGRLSSTKGRMTNY-ARSQGLSPR----DAERAAGLAL 1059

Query: 881  IFVNIPAK----------------------MAIESIGIHLTGFADRIDLLKSG------- 911
            + +                             ++S G+H+    DR  L           
Sbjct: 1060 VALESALSSKTGRWLLHPHPGAQSEFGLHTADLDSPGVHI--RMDRTFLAGDQPLAEGTS 1117

Query: 912  FVDITDYKTG--DNPKKE--TAQKLIDP-QLSLEAAALKAGS 948
               I D+K+    NP       Q+     Q+   A A +A  
Sbjct: 1118 VRWIIDFKSSEHGNPDHAYFDVQRAKYLGQMQTYAQAARAVG 1159


>gi|290968022|ref|ZP_06559571.1| ATP-dependent nuclease subunit A [Megasphaera genomosp. type_1 str.
            28L]
 gi|290781928|gb|EFD94507.1| ATP-dependent nuclease subunit A [Megasphaera genomosp. type_1 str.
            28L]
          Length = 1217

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 100/894 (11%), Positives = 222/894 (24%), Gaps = 111/894 (12%)

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
             A + AD++D +       + L       +   +  A            E L     S+P
Sbjct: 318  FAVSSADLLDGMRAVLPVMKGLVQ-VTSDFAAAYEKAKREKGWIDFSDLEHLCLKILSAP 376

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                  ++ +     ++     ++I     +      +   V+   N  +V    D    
Sbjct: 377  ESTPDRIVPSAVARKLQEKYAEVLIDEYQDTNGVQELITQLVSRTNNRFMV---GDIKQS 433

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               +                    PQ         L+     + ++    NE++   M  
Sbjct: 434  IYRFRLADPSLFLEKYKRFRRE--PQAVER--CIDLNRNFRSMPQILAAVNEVFAAIMTE 489

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE------------------RE 369
              + L     +  +     +  P+     ++V L+    +                   +
Sbjct: 490  EAAGLAYGEREFLHAGRGPSDHPHTVSGRTEVCLLSTGEKEKETTEATEATAQEQTAFEQ 549

Query: 370  EAISIAIALRMSLDEN---------------KKKSALITADRNLARRVKLELTRFGINID 414
            E+  IA  ++  L  +                    L+ +    A  +   L + GI   
Sbjct: 550  ESAYIAEKIQHLLASHTYITEKDGTHTPLSYGHIVILLRSPAGKAEVLVQALQQAGIPSF 609

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
                      +   I+ SLL  I      + +A +++ PL           R   A  L 
Sbjct: 610  AEQNGGYFAAIEVQIMLSLLQCIDNPQQDIPLAAVLRSPLVGVSEACLAELRLLGAGPLW 669

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                   +          L +   Q  +      +  ++E    L      +      P 
Sbjct: 670  RNAARYITQGENSSAVTALQQFLQQLESWRTYSRRHSVAELIWRLFSDTAYYEYVGGLPG 729

Query: 535  VTYKTNKNSTCGNLSI---SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             + +          +        +     L+ +   +   +     +  G+    +    
Sbjct: 730  GSIRQANLKALYERARQYEEHGFRGLFRYLRLLDKMKEDGVDLAPAKVAGEKEDVVRIMS 789

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLN 650
            I     ++   +   D+       +  +P +   +  + +        +++ TL   G+ 
Sbjct: 790  IHKSKGLEFPVVIVADMGKAFNRQDWNEPILFHHTLGIGLKQYDTDWRMSYPTLAWNGIR 849

Query: 651  EGV-WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-----TRHLIYTRSLR 704
                W     +   L   M     L     +    A+D+               +   + 
Sbjct: 850  AQSAWESTAEEERILYVAMTRAKELLLLIGHTSHLANDWNRWCQGVPPERAKSYWDWVMP 909

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLK-------------------KRGQCYLDWTRKL 745
                    +  L   +       + N                     +R           
Sbjct: 910  TVLKNCSTAPALTTAIETATDGVWQNDIWQVRVQCSLPAVRSSRCKGERDPRLAALQEGN 969

Query: 746  DYTTKQPHYKRPK-----PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD------ 794
               T+ P +   +      +P         S SEIK+   +      +    L       
Sbjct: 970  PTGTEPPAWLEERLQWRYAYPQAVTAAAKLSVSEIKRQQQEWEQAALQAERGLSRLLPEM 1029

Query: 795  --FIPHFKKDP----------DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                  F + P               GT  H  +  +          EI   + Q     
Sbjct: 1030 ATEEDPFAQPPLWEVTDENKMTGAAYGTAMHKAMQYIAGNTHA-GLDEIRADLVQWEKEG 1088

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------- 895
                     I         +I   +L+   K  ++   +    P  + ++          
Sbjct: 1089 IFSAAERAAI------KVAQIRAFWLQPLGKRMAASPVVHREYPFSVLLQGNPYLPTLEA 1142

Query: 896  ---IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
               + + G  D +         I DYKT      E  ++    QL++   A++ 
Sbjct: 1143 GEAVLVQGVLDVLFQEGE-EWVILDYKTDRLSTPEAFRERYHVQLAIYKQAVEQ 1195


>gi|312880761|ref|ZP_07740561.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
 gi|310784052|gb|EFQ24450.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
          Length = 1200

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 105/963 (10%), Positives = 234/963 (24%), Gaps = 92/963 (9%)

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD------I 126
             + P ++ + ++ +      L    + +           LAR   +  +   D      +
Sbjct: 238  ALEPRLREIRNLWDGDLLPSLGADLDRDGSKMGEALRGFLARTASLPWDGEGDRRFVREL 297

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
             +      P +  +       L  +L D  D   +E +    L    + +          
Sbjct: 298  FEGPLKRLPGTSKLKALLEEGLGSSLKDWRDDRASEAELARSLEEGISPEEDALLERICR 357

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPATARL 245
               +    W    +   A           +A   +         +++     + P   RL
Sbjct: 358  VCALGWAAWDASRMRSGALIFRDLIALARQALERNPAYASRFRHLLVDEFQDTDPLQDRL 417

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL--------- 296
            +  +     G++ +   D       +        + T      +   + SL         
Sbjct: 418  VQALWEGGKGSLFV-VGDLKQSVYRFRHADLALFDETLQRARATGGDRISLDCSYRTRGK 476

Query: 297  ----------AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                      +   + L               E        +      +       +  E
Sbjct: 477  LLEGINGLFGSLWEEGLGAGLSLGYDPLRGPEEAPWWKERNALPGPALEVLTATPREPEE 536

Query: 347  NKIPNIQKCFSDVALIE----ADNEREEAISIAIAL----RMSLDENKKKSALITADRNL 398
             +    ++   ++ L      A   R    + A       R       +  A++   R  
Sbjct: 537  EEGEPSKEKVDELRLRLYGTLAARFRSLVETGAPVWDKAQRRHRPAAYRDLAVLVPTRAD 596

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
               ++   T FG+    +A +   T      L  LL ++    D +A+ + +  P +   
Sbjct: 597  YPLLEEAFTAFGVPGAFTAAVGFFTRGEVRDLADLLASLADPRDPLALGSFLASPFSGLP 656

Query: 459  FPE-KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                       +  E   L       D +   +L+    A  +     P W +      +
Sbjct: 657  LDGVLPRLGRGDLGEDPELAAGVAERDRLRRIALLEGGTAALEALLARPSWLAAYPPGAR 716

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
               +  +                              +        +  DE         
Sbjct: 717  RRVLGNLRTAADLAASFEATFGPSLPGTAAYLGQALARELPQAEPELLEDED-------- 768

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                    ++    +     ++   +  + +          +    +   L +       
Sbjct: 769  --------AVRVLTVHAAKGLEFPVVAVVRLEKTPEARGKARVLPSRHLGLSLGSWPPDL 820

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RH 696
                 + +  GL EG + +   +  +                        +  A      
Sbjct: 821  EPPEASPVRSGLWEGFFEEAGTREEW--------------------QRLLYVAATRAQDR 860

Query: 697  LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
            L    + R     TI       + VL        + +  +   + +     +      + 
Sbjct: 861  LWLLGTQRRGQDGTIRGAAGSWMEVLRKHPLPGAVWEEVETAPEGSSPPPPSAPASRLRP 920

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI----PHFKKDPDRTDRGTLF 812
                P         S +        P A   R    LD           D    D G+L 
Sbjct: 921  LPLPPRETTPLARLSATAYSLFRFCPLAYRMRFRQGLDPAWEGGSPLDGDAGGADLGSLA 980

Query: 813  HNIITELIKKRIN--KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
            H ++     +  +  +          + + +   ++  P   D   R    +    F E 
Sbjct: 981  HWVLARWDGRGASLPRWLTSPEGERGRTLLNLLPQDLRPLFRDASVRETLERWLGGFSET 1040

Query: 871  ---EEKIQSSIEKI-FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
               E    +         +P ++ +      L G  D +    SG + + D+KT      
Sbjct: 1041 PWGEAFRAALSLPSCRREVPFRVPLGET--LLVGAVDLLWQDGSG-LHLRDHKT--ARSA 1095

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
            E A+ L   QL   A A +              L+ +R +                 D L
Sbjct: 1096 EAAETLYSHQLRFYALAARR----AHGEAPDLALWLLRPRNDGSFPPPLEVPPPGDWDLL 1151

Query: 987  SEK 989
             E+
Sbjct: 1152 EEE 1154


>gi|297588276|ref|ZP_06946919.1| probable ATP-dependent exonuclease [Finegoldia magna ATCC 53516]
 gi|297573649|gb|EFH92370.1| probable ATP-dependent exonuclease [Finegoldia magna ATCC 53516]
          Length = 892

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/460 (14%), Positives = 138/460 (30%), Gaps = 67/460 (14%)

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            +  LI    V         + I    + RL N+D L +  +N+ V P     + F +   
Sbjct: 448  LMDLIKNLKVDSTDYLVDGIRIYSLTDIRLSNYDVLYMVNMNDDVIPGKINYDFFNNEEN 507

Query: 669  QSDLNLKTAE-------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
               L  +  +       +          +    + +  + +       +I SR +    V
Sbjct: 508  IEFLQKRGVDILSDGENRKRNIDRFIDAIKRANKKIYLSYNTES----SIKSRLILDKNV 563

Query: 722  LGGTDF----FDNLKKRGQCYLDWTRKLDYTTKQPHYKR--------------PKPFPPL 763
                        N+KK     L      +  + + H  R                     
Sbjct: 564  KSNQKIRKINTKNIKKIDTKQLHSVSAYEKYSLKQHLNRIENRISSKNIFDFEVDDKTTQ 623

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                +  S ++++     P   Y R  LKL      ++     D GT+ HN + E     
Sbjct: 624  YILKKELSSTQLETYFECPMKFYFRYYLKLKPQIKSRQ----LDIGTILHNTLEEFYGIN 679

Query: 824  INKNTPEI-------NHLMKQIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKI 874
            I+K    I          + +++ + FEK  L   I         +      F+  +   
Sbjct: 680  ISKIRDAIYGKCELDVSSLDELLKNSFEKFGLNTDIKENEFDYEKYLNKLKDFVISDIYN 739

Query: 875  QSS----IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKET 928
              +         +     ++++       G  DR+D   +G + + DYK   N   K + 
Sbjct: 740  MKNESEKFYPYKLEEDFIVSLDENT-KFIGRIDRVDRTDAGKIRLIDYKLSKNSFRKAKD 798

Query: 929  AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
              K    Q ++ +               V +  Y  +K   + + + N  K    + + +
Sbjct: 799  LDKNKGFQFAIYS-----------SYGDVVSCKYKSIKDNEEYEYLQNVSKDQLNEIMIQ 847

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            K  +   E +   +      +      E S    +Y+ + 
Sbjct: 848  KVKE-FRENIRSKR------LFVKASDENSCKYCDYNKIC 880


>gi|120556547|ref|YP_960898.1| DNA-dependent helicase II [Marinobacter aquaeolei VT8]
 gi|120326396|gb|ABM20711.1| ATP-dependent DNA helicase UvrD [Marinobacter aquaeolei VT8]
          Length = 726

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 82/702 (11%), Positives = 189/702 (26%), Gaps = 125/702 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+     T +A +E+R    ++    +  L  I +   +      +    +  L      
Sbjct: 61  SILAVTFTNKAAKEMRYRVEQMMQIPTRGL-WIGTFHGIAHRLLRSHWKDA-GLPENFQV 118

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +    +L RLI     +         P+                      I+  + E  +
Sbjct: 119 LDSDDQL-RLIKRVMRENRIDESQWPPKQAQW-----------------FINSQKDEGLR 160

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            + +     + +          LKI  + + +   +            L+R+    L + 
Sbjct: 161 ADHIQENPGDHF------TNTMLKI-YRQYEKLCQQGGLVDFGE---LLLRSHELWLHRP 210

Query: 226 --------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                       I++     +       +  +A+  N   +    D       W     +
Sbjct: 211 ELLSHYQQRFQHILVDEFQDTNTIQYAWLQVLAS--NRVPLTVVGDDDQSIYGWRGAKIE 268

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +      P   L +L       +  +K   +V     GR              
Sbjct: 269 NIQQYQRDF-----PNSRLVRLEQNYRSTKTILKAANSVIANNQGR-------------- 309

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--KKKSALITAD 395
                  L  ++         ++L  A NE++EA  IA ++   + E   + + A++   
Sbjct: 310 -------LGKELWTDGVEGEPISLYAAFNEQDEANYIADSISAWVSEGNLRSECAILYRS 362

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L R GI   +  G+            + L  +    D  A   +V  P  
Sbjct: 363 NAQSRVLEEALMRQGIPYRVYGGLRFYDRQEIRNALAYLRLVHYHRDDAAFERVVNIP-- 420

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                                           + +  L  I        +  W      E
Sbjct: 421 -----------------------------TRGIGAKSLQEIREYATGQGISLW------E 445

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             E  +       +  T L  +    N+       +    L    +++  L   +     
Sbjct: 446 SSERLLAAGQVKGRAKTGLQQFMEIINTLSEMAGHASLQGLMKQAIESSGL---KDYHAS 502

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKAN--AIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
              E+G+       +++   +            + I +               ++ ++  
Sbjct: 503 EKGEKGQARVENLEELVSALADYDVEEGVDPLAEFIAQAALDAGESQADAHEDSVQLMTL 562

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + L G+ EG++P +              ++L+   +   +    +     
Sbjct: 563 HSAKGLEFPMVFLAGVEEGLFPHS--------------MSLEEPGRMEEERRLAYVGITR 608

Query: 694 T-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
             + L+ T +             L R +     D    ++ R
Sbjct: 609 AMKKLVLTYAESRRLYGQEKFHALSRFVREIPGDCLQEVRLR 650


>gi|229195442|ref|ZP_04322210.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1293]
 gi|228587982|gb|EEK46032.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1293]
          Length = 1166

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 92/899 (10%), Positives = 213/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E   +G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEEGEMKPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 612

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 613  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 672

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 673  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 732

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 733  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 792

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 793  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHIRAGASCYLDWI 852

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + ++P         W   ++        + +++  Q  L+  R
Sbjct: 853  APSLYRHRDSEILLELGQGSVPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 912

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      Q   K       +       + S   +                ++ +    R 
Sbjct: 913  EKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKIRA 972

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 973  PIRTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITEEVIREQIAGMVNKELL- 1026

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1027 -TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGQSGESIL 1085

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1086 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKS 1143


>gi|225870395|ref|YP_002746342.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
 gi|225699799|emb|CAW93615.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi
           4047]
          Length = 763

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 82/694 (11%), Positives = 187/694 (26%), Gaps = 120/694 (17%)

Query: 46  SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-- 102
           ++     T +A +E+R          K T+   I +   +       +            
Sbjct: 54  NILAITFTNKAAREMRERALALSPATKDTL---IATFHSMCVRILRREADHIGYNRNFTI 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++             L P+       S    I  AKN  D++D     
Sbjct: 111 VDPGEQRTLMKRIVKALN---------LDPKKWSE--RSILATISNAKN--DLLDE-RAY 156

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
           E    DL++                     K + E L    A       +  +R   ++ 
Sbjct: 157 ELGASDLYSQTVA--------------RCYKAYQEELRRSEAMDFDDLIMMTLRLFDQNP 202

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L++ +A+      V+   D       W     +
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVTLLASRFKNICVV--GDADQSIYGWRGADMQ 260

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P   +  L +     ++ ++    V      R              
Sbjct: 261 NILDFEK-----DYPDARVVLLEENYRSTKKILQAANEVIQHNRHRRPK----------- 304

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
                     K+         +    A++ER+EA+ +A  +     E     K  A++  
Sbjct: 305 ----------KLWTQNADGEQIVYYRANDERDEAVFVASTISNMCLELGKSFKDFAVLYR 354

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + + L  +   +D ++   +V  P 
Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLTVVANPSDNLSFERIVNEPK 414

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G       R                                          ++  S 
Sbjct: 415 RGVGPGTLDKLR-------------------------------QFAYGQGQSLLEAASSL 443

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           E   L       +L   + L   + + +            + T         +       
Sbjct: 444 EQSPLKGKAAQAMLALASLLSDLRADLDQLSITALAEALLEKTGYLDMLRVQNTLESQAR 503

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  +++  F  +       +A        +  L           +++ + ++   
Sbjct: 504 IENIEEFLSVTKSFDDLSAQQQEHEAGIDRLGRFLNDLALIADSDDGNAETAEVTLMTLH 563

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P   A               +  ++   +    +      
Sbjct: 564 AAKGLEFPVVFLIGMEEGVFPLARA--------------AEDQDELEEERRLAYVGITRA 609

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723
              ++     TR+L   +     +R+L+ +    
Sbjct: 610 EECLFLTNANTRTLFGKSSYNRPTRFLKEMSENL 643


>gi|163802369|ref|ZP_02196263.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio sp. AND4]
 gi|159173898|gb|EDP58712.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio sp. AND4]
          Length = 1164

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 101/924 (10%), Positives = 233/924 (25%), Gaps = 97/924 (10%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+ E  +  G  + +      L      +    +L         +   
Sbjct: 41  QILVQSPGMSQWLKMELAKEFGVAANLE---FPLPATFIWEMFTQVLTDVPKRSAFNKEA 97

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE---- 163
              +L  L+      L +   +      L      +    LA+ +ADI D          
Sbjct: 98  MTWKLMHLLPGL---LNEASFEPLAR-YLQDDDDHSKLYQLAEKIADIFDGYLVYRPEWI 153

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
             WE    +   +    W        I  +   +  V L       ++  L     + L 
Sbjct: 154 ANWEAGQTVPELEGEHPWQ------PILWQALYDHTVTLG--HSPYHRANLYEHFIDTLE 205

Query: 224 K------GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW------ 271
                       + + G +   P     +  +  H +  ++      +    +       
Sbjct: 206 NFNGNFEHLPKRLFVFGISSLPPRYMDALKAIGEHIDVHLMFTNPCRYYWGEVRDRKFLA 265

Query: 272 -------------------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                                 +E+       N     H       LL  +     D   
Sbjct: 266 RLAAKHRKHVVWQEDHSEVRGESEQLKGSLEENLVDELHADVVGNSLLASMGKLGRDNMY 325

Query: 313 LGNVSNEMY-------GRSMVISKSFLPPDTSDMRNTDILENKIPN---IQKCFSDVALI 362
           L +              R  ++ +        +    D   +   +   +      ++L 
Sbjct: 326 LLSQLESHEIEAFVDVERDSLLHQLQADILNLEEHQDDQQIDSSQHKQLVTLGDKSLSLH 385

Query: 363 EADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINI 413
              +   E   +   L    D +     +   ++ AD N        +         I  
Sbjct: 386 SCHSPMREVEVLHDQLLAMFDADPTLKPRDIIVMVADINAYSPAIQAVFGNAPGERYIPY 445

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNAL 471
            IS       +   +    L+N          +  L++ P  L +F   E    +AK  +
Sbjct: 446 SISDRTADQESPILAAFMQLVNLPNTRCLASELLELLETPAILQRFELSEDDFLQAKQWV 505

Query: 472 ELVALRGNKNSYDIMDLK--------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
           E   +R   +S+   + +         L   +                  +        +
Sbjct: 506 EESGIRWGLDSHTGGEFELPETRQNTWLFGIQRMLLGYAMPESASLFEAQQGSLAPYNEV 565

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                +    L  +    +   G LS +         L  +       L  L  E   K+
Sbjct: 566 QGMGAELAGKLAHFIQQISHYRGKLSHAQSIDAWREILVAMLDGF--FLVELEGEMALKS 623

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS---STLFILGTLESRLLN 640
           +    S++ E  +           I+ + +  +    ++ +      +     +  R + 
Sbjct: 624 IRDTLSQLKEQLTDADFEDDLSPAIVRQYLQNKLSGTRVSQRFLAGQVNFCTLMPMRSIP 683

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
           F ++ L G+N+GV+P++     F     ++    ++             + +  + L  +
Sbjct: 684 FRSVCLLGMNDGVYPRSMPPEGFDLMTGRTKPGDRSRRDDDRYL-FLEAVLSAQQSLYIS 742

Query: 701 RSLRE--NNIPTIASRWLQRLLV------LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
              R   +N   + S  +  L+           D    +   G   L+    +       
Sbjct: 743 YVGRSIQDNTERVPSVLVSELMEYCHQNYCLEGDQEQPVDDSGDKLLNELVNVHAMVPFS 802

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                        +    + ++  QL       + R +        F  + D  +    +
Sbjct: 803 PNSFQGSHASYAKEWIPAALTQSNQLQGSARGEFNRALDDYLLGASFPIELDLVELQRFW 862

Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
              +     +R+         +M    D  F    L  +           +  + +    
Sbjct: 863 RLPVQYFFNRRLKVIFEPPLPIMAD--DEPFVLGGLESYQMRDEL--LETLLETAITQPS 918

Query: 873 KIQSSIEKIFVNIPAKMAIESIGI 896
                ++       A+  +     
Sbjct: 919 AKADVLKHFMSEQRAQGKLPVGAF 942


>gi|255020260|ref|ZP_05292329.1| ATP-dependent DNA helicase UvrD/PcrA [Acidithiobacillus caldus ATCC
           51756]
 gi|254970402|gb|EET27895.1| ATP-dependent DNA helicase UvrD/PcrA [Acidithiobacillus caldus ATCC
           51756]
          Length = 729

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 77/770 (10%), Positives = 175/770 (22%), Gaps = 121/770 (15%)

Query: 11  IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK 70
           + P          +     L+    +     +  A +     T +A + +R     +   
Sbjct: 31  LPPGPALVLAGAGSGKTRVLISRIAHLLEEGVRPAEILAVTFTNKAARSMRERLAALVQV 90

Query: 71  KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
               L  + +   +              L      +       RL+     +L    K  
Sbjct: 91  DLAPL-WMGTFHGIAHRLLRRHAEA-LGLPADFQVLDSDDS-QRLVRRALRELGLDEKQW 147

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            P                   LA  I   + E             +    W +       
Sbjct: 148 TPR-----------------ALAAQIGRWKDEGWTPAQ----VPAREVGRWTIPVQ---- 182

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAE----HLMKGTKGPIIIAGSTGSIPATARLM 246
             + +                +  +R   +       +     +++     +       +
Sbjct: 183 VYERYERIKERGGLVDFADLLLYALRLWDQDGILEHYRERFQHVLVDEFQDTNAVQYTWL 242

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
             +A H     +    D       W     ++    + +                     
Sbjct: 243 RRLAAHGR---LFVVGDDDQSIYAWRGARVENLLRFAEDFP------------------- 280

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                  G     +       +      +     N + L   +   Q     + L  A N
Sbjct: 281 -------GAALVRLEQNYRSSAPILAAANAVIAHNAERLGKTLWTAQDGGEPLELYAAYN 333

Query: 367 EREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
           E +EA  +   ++  + +  +    A++      +R  +  L R G+   +  G+     
Sbjct: 334 EEDEARFVVAQIQQWVAQGGRREDCAILYRSNAQSRVFEEILVREGVPYRVYGGLRFFER 393

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                + + L      +D  +   +V  P    G       R +                
Sbjct: 394 AEIKDVLAYLRLCRNRHDDASFERVVNLPTRGIGNVTLERLRLQAR-------------- 439

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                                            + A       L     LV     + + 
Sbjct: 440 --------------------------EQGLSLWQAAGQAASPKLNAFLTLVDGLAAEIAG 473

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               +                 D  R    L   +E    +  ++ + E  +  + N   
Sbjct: 474 DELDAAVQRVIEVTGLRDWYARDGDRNEGRLENLDELINAARAYAFVEEREALRELNPDP 533

Query: 605 ---WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                + +T                 + ++    ++ L F  + L GL EG++P   +  
Sbjct: 534 GNRLSEFLTHAALEAGEGASDAWEDAVQLMSLHSAKGLEFPVVFLVGLEEGLFPHQRS-- 591

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLL 720
                       L+ A+    +    +       R L+   +       +  +    R L
Sbjct: 592 ------------LEDADGLAEERRLCYVGMTRAMRRLVLCYAESRRLHGSERASLPSRFL 639

Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
               +D    L+ R +           + +Q    R  P+P         
Sbjct: 640 RDLPSDLVRELRPRARIRRPVVPTATLSPRQGSAARDLPYPLGSRIRHPV 689


>gi|257784187|ref|YP_003179404.1| UvrD/REP helicase [Atopobium parvulum DSM 20469]
 gi|257472694|gb|ACV50813.1| UvrD/REP helicase [Atopobium parvulum DSM 20469]
          Length = 812

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/679 (10%), Positives = 165/679 (24%), Gaps = 88/679 (12%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            V     T +A  E+R     +     +      + +   +       D           
Sbjct: 54  QVLAITFTNKAAAEMRERLEALLPNNIRGMW---VCTFHAMCVRLLREDGDRLGYGP--- 107

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                          +     D  K L       L I          ++   I   +   
Sbjct: 108 --------------NFAIYDDDDSKRLVKAILSDLDIDVRQFPL--NSIRSKISAAKNAL 151

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              +D+ A                +    +    RL + NA       I      +++  
Sbjct: 152 LYPDDVEAQAASPMD-------HVVARVYRALQTRLDKANAMDFDDLLIKAFELLSKYPD 204

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I +     +      +   +A+     +V+   D       W     K+
Sbjct: 205 VLAKYQERFRYINVDEYQDTNGVQYAITKLLASKYRNLMVV--GDDDQSIYSWRGADIKN 262

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       + +  + KL          +     V      R               
Sbjct: 263 ILAFEK-----DYEEAVVVKLEQNYRSTGHILAAANAVVAHNSHRKPK------------ 305

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADR 396
                    ++   +     + + +A +ER+E   I   +    D   +    A+     
Sbjct: 306 ---------RLFTDEGDGEKIQVYQASDERDEGAWIGSEIEKLHDKGMSYDSIAVFYRTN 356

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  L R G+   I  G           + + L  +   +D MA   ++  P   
Sbjct: 357 AQSRILEDMLLRAGVPYKIVGGTRFFDRAEIRDVMAYLKVVVNPDDDMAAMRVINTPRRG 416

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G       +   AL       +     +M+   L           T        +  E 
Sbjct: 417 IGATSIQKIQTY-ALHNGLSFFSACEACVMEESLLTAKVRNALVEFTSAIEHGRHIDGEL 475

Query: 517 KELAVLLVDH--ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
            E+   ++D   +++ +    T + +              +   +        E  +   
Sbjct: 476 DEVVEAIIDRSGLIRALEAEHTIEADGRIENIREFFGVAAEFDESHDDVEETLESLQQLR 535

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIK-------------------ANAIEWIDIITRLIDG 615
                + +  +SL +      +                        A +    +  L   
Sbjct: 536 EAGVLDAQDAASLNATGFNAATGTLSSVAVSPTPTSQEENLHPQVVAEKLPAFMEWLALR 595

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
             +      +S + ++    ++ L F  + + G+ EG++P    +        +  L   
Sbjct: 596 SDLDSMDGSTSAVTLMTIHSAKGLEFPAVFVAGMEEGIFPHANYEAEAAQLEEERRLAYV 655

Query: 676 TAEKYIGQAAHDFEMANGT 694
              +   +    +     T
Sbjct: 656 AITRARKRLYLTYASTRRT 674


>gi|332359409|gb|EGJ37229.1| exonuclease RexA [Streptococcus sanguinis SK355]
          Length = 1224

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 91/846 (10%), Positives = 208/846 (24%), Gaps = 107/846 (12%)

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPA 241
            F+   ++ + ER    NA          +             +     +++     +   
Sbjct: 371  FVADFAQAYLERKKAENAFEFGDISHFAIEILETFPEVRRFYQERYHEVMVDEYQDTNHT 430

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS------ 295
              R++  +A    G       D       +     +  +            Q        
Sbjct: 431  QERMLDLLAR---GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKLIVLKE 486

Query: 296  -LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
                 L+ L+   +  KRL +        +         P   +    +     I    K
Sbjct: 487  NFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKREPNPANRASFLIYEGSK 546

Query: 355  CFSDVALIEA---DNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTR 408
               +    E         E   +   +    +E     K   L+TA R     +     +
Sbjct: 547  ESPEEEADEGLPQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLILAAFEQ 606

Query: 409  FGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
              I +    G      ++   ++   L  I    +  A+  L+K P+  FG  E      
Sbjct: 607  HQIPLVPDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSL 666

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
            + + E       +   + ++ + L    +  +         ++  S         L D I
Sbjct: 667  QASQEHSQENLYEKLVNALEGRGLHPALVTEKLQKKLQHFHETLQSWRTYSKTHSLYDLI 726

Query: 528  LQCITP------LVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNLWFEEE 580
             +          + T            ++S    +   +  + +          L  + +
Sbjct: 727  WKIYQDRFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHD 786

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL-- 638
                S   +   +    +  +  + ++     +         + SS+  IL   +     
Sbjct: 787  L--ASVPVAAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIK 844

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA------- 691
               D  +             + +    +   ++L L +  + +         A       
Sbjct: 845  YVADVSVSVEAPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLV 904

Query: 692  -NGTRHLI------------YTRSLRENNIPTIASRW-----------LQRLLVLGGTDF 727
              G++ ++             + SLR          +                 +   + 
Sbjct: 905  GKGSQEVLDERQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEEL 964

Query: 728  FDNLKKR-GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAV 785
                  R  +  L     L    +    +R         Q  +   S I+   +  P  +
Sbjct: 965  TAEEIGRINEPVLFPADDLADNRQSDSIRRALDILESVDQLNSQYRSAIELPSVRTPSQI 1024

Query: 786  --YARRILKLDFIPHFKKDPDRT-------------------DRGTLFHNIITELIKKRI 824
              +   I+  D +    +                          G+  H ++  +     
Sbjct: 1025 KKFYEPIMDTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSR 1084

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                   + L +   D   +K+   P I   +     ++             + +++   
Sbjct: 1085 PSMAVLRSALAQVQADDAVKKQIQLPKIASFFETDLGRLL----------IENSDRVRRE 1134

Query: 885  IPAKM----AIESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
             P  M            L G  D   +       + + DYKT               QL 
Sbjct: 1135 APFAMLKRDDASGQEFVLRGILDGYLLFED---RIILFDYKTDKYKDSSELIARYHGQLD 1191

Query: 939  LEAAAL 944
            L A AL
Sbjct: 1192 LYAQAL 1197


>gi|260577850|ref|ZP_05845783.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734]
 gi|258604009|gb|EEW17253.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734]
          Length = 950

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 78/736 (10%), Positives = 188/736 (25%), Gaps = 93/736 (12%)

Query: 30  LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKF 89
           L     Y   N +    +     T +A  E+R   +++ G ++  +  + +         
Sbjct: 165 LTRRIAYLLANGVAPWQILAITFTNKAAAEMRERVVDMVGPQAERM-WVSTFHSFCVRVL 223

Query: 90  TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
            A+  L+  LN   S         RL+ +        +K+  P   L++  +        
Sbjct: 224 RANAHLAPGLNTNFSIYDSDDS-KRLMTMIIKDASLDLKEFSPRGVLNVISNW------- 275

Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
                     + E                         +    K +  RL   NA     
Sbjct: 276 ----------KNELVGPAGALEEAQRDSNPH----TAQIATLYKTYQNRLRAANAVDFDD 321

Query: 210 YQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG-AIVLPGLD 263
               ++             +     I++     +  A   L++ +A        +    D
Sbjct: 322 LIGEVVAILNNNPDVREHYRRRFRHIMVDEYQDTNHAQYELVAALAGKGKAECELCVVGD 381

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                  +   T ++      +                 L+      +++ + +N +  R
Sbjct: 382 ADQSIYAFRGATIRNIEEFERDYPD---------AHTILLEQNYRSTQKILSAANAVIDR 432

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
           +       L  D  D                    +    ADNE +EA  I   +   +D
Sbjct: 433 NQGRRPKKLWTDLGDGEL-----------------IGGYVADNEHDEANFIVEQIDDLVD 475

Query: 384 ENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                    +++    N +R ++  L R G+   +  G           + + L  +   
Sbjct: 476 NEGYSYGDISIMYRTNNASRAIEDVLVRSGMPYKVVGGTRFYERREIRDIVAYLKVLDNA 535

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL------RGNKNSYDIMDLKSLVLD 494
           +D +A+  ++  P    G             + +                +       + 
Sbjct: 536 DDTVALRRIINTPRRGIGDKAIAQVTVHAEGQGIGFSAALGDAAAGKVAGLSARGRNSIG 595

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAV--LLVDHILQCIT-----PLVTYKTNKNSTCGN 547
           +     +          ++  D        L   I   +       L+    +       
Sbjct: 596 KFLEMMDALRAETESMEMTASDGSGLGLPDLGRVISAVLDMTGYKELLEKSNDPQDGARL 655

Query: 548 LSISDWTKLTVTCLQNVCL--DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            ++++   +     Q                    G +  S         +  +A     
Sbjct: 656 DNLNELVSVGHEFSQESANLKAYEEMPGGGTAGSAGSSDGSAGDTADAMLTEGEAPLGSL 715

Query: 606 IDIITRL-IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
              + R+ +  +  +   ++   + ++    ++ L F  + L G  +G +          
Sbjct: 716 QAFLERVSLVADADQIPADEQDMVTLMTLHTAKGLEFPVVFLTGWEDGQF---------- 765

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI-----YTRSLRENNIPTIASRWLQRL 719
                  L   T  +   +    +      +  +      TRS     +    SR+L  +
Sbjct: 766 --PHMRALGDPT--ELAEERRLAYVGITRAKQRLFLTRAITRSGWGAPVNNPPSRFLSEV 821

Query: 720 LVLGGTDFFDNLKKRG 735
                    +   + G
Sbjct: 822 PEDLMEWIREEPARFG 837


>gi|153813842|ref|ZP_01966510.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756]
 gi|145848238|gb|EDK25156.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756]
          Length = 1197

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 86/845 (10%), Positives = 213/845 (25%), Gaps = 155/845 (18%)

Query: 213  ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG-AIVLPGLDCHIPTAIW 271
             L+ +            I+I     S      ++++V+    G   +    D       +
Sbjct: 375  ELVPSAVAGEYAKQFEEIMIDEYQDSNFVQETILTSVSGQAEGKNNIFMVGDVKQSIYSF 434

Query: 272  NTITEKSTNITSSNTTYSTHPQYS--LAKLLDFLD-------------IKREDVKRLGNV 316
                 +      +  +     +    L K                   +K+E      + 
Sbjct: 435  RLSRPELFMQKYNTYSLEDSDRQRIDLHKNFRSRGEVLDSVNYIFRRIMKKEMGGIEYDD 494

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
            S  +Y  +       +          +   +          D      +  R EA  IA 
Sbjct: 495  SAALYLGAKFPKTEEIEAKRYISSECERNTDLFKTELLILKDRDKEAENVRRSEARMIAR 554

Query: 377  ALRMSLD--------------ENKKKSALITADRNLARRVKLE-LTRFGINIDISAGIPL 421
             ++  +                  K   ++T             L   GI     +    
Sbjct: 555  RIKSLMRGGVVSDKKTGEYRPVQYKDIVILTRSVKGWAEDFSAVLAEEGIPAYSVSREGY 614

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              T   S+L   L  +      + +A ++  PL      +    R               
Sbjct: 615  FETYEVSVLLDYLKILDNGRQDLPLAAVLASPLGNLLTEDMAKIRVA------------- 661

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                               +       +   SEE ++    L D +++  + +  ++   
Sbjct: 662  -----------------YPDVPFHESARMYASEEAQDPV--LKDRLMRFFSQVDHFRKKV 702

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
            + T  +  +++  + T        +        +      + L         T      +
Sbjct: 703  SYTPIHDLLTEIIEETG-----FGIYISAMEGGVQRAANVEMLVEKAKAFEGTSYKGLFH 757

Query: 602  AIEWIDIITR-LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
             + +I+ + +  +D        E++ T+ I+   +S+ L F  +   G+ +    ++T  
Sbjct: 758  FVRYIEQLKKYDVDYGEAGIMDEQADTVRIMSIHKSKGLEFPVVFAAGMGKQFNTQDTKS 817

Query: 661  NPFLSR---------VMQSDLNLKT-----------AEKYIGQAAHDFEMANGT------ 694
            +  L            ++      T            E +  +    +            
Sbjct: 818  SMILHPEWGIGIDKIDLKRRTKAPTFLKKLIREEAMYEMWAEEMRILYVALTRAKEKLIM 877

Query: 695  ----RHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT-----RK 744
                      RS ++        S +   +  L   +    L+    C   +T       
Sbjct: 878  TGVLPDRFIMRSGKDGVITAGAKSYFDWIIPALWSEEEEAALEDAPVCIFQYTGNDIGAD 937

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA---------------RR 789
            +     +           +           + +  +  Y  Y+               R+
Sbjct: 938  ILQVKSEQLALDVLKHWDVTKVYDPEIRKCLDEQADYVYPYYSEGGMKMKFTVSELKKRK 997

Query: 790  ILKLDFIPH----------------FKKDPDRTDRGTLFHNIIT--ELIKKRINKNTPEI 831
             L+ +                     ++      RG+ +H  +   +  K+       ++
Sbjct: 998  ALQEEAGEEMYKEPQTVPLLPRFIKEEETLSGASRGSAYHKFLELLDFAKEYEA---DDL 1054

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
               ++++ +       +   I+      F +        +        K++   P  +++
Sbjct: 1055 EAEVERLAEDGRLSREMAECIETEDMMRFLRTKSGVRMLQAARN---RKLYKEQPFVISV 1111

Query: 892  E----------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
                          I + G  D     + G + + DYKT     ++   +    QL   A
Sbjct: 1112 NASEIYQGDLSGEKILVQGIIDVYFEEEDG-LVVLDYKTDQVKSRKELVEKYHAQLEYYA 1170

Query: 942  AALKA 946
             AL  
Sbjct: 1171 HALSQ 1175


>gi|311742505|ref|ZP_07716314.1| RecB family exonuclease [Aeromicrobium marinum DSM 15272]
 gi|311314133|gb|EFQ84041.1| RecB family exonuclease [Aeromicrobium marinum DSM 15272]
          Length = 298

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 60/199 (30%), Gaps = 18/199 (9%)

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
              P         S S        P     R I +L              RGTL H ++ 
Sbjct: 6   ADDPTPAVFRARLSPSRAGDFQTCPLLFRFRTIDRLPEP-----ASPVMARGTLVHAVLE 60

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLP---------PHIDIIWRHLFHKISHSFL 868
            L        T E    M        + E+           P     W     ++  S+ 
Sbjct: 61  HLYDAPAEARTLEAATAMLPDAWQTLQAEDERLQELFDAGRPDDQAAWLASAAELLGSYF 120

Query: 869 EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928
             E+  +  +E     +  +  ++   + L G  DR+D+   G + I DYKTG +P    
Sbjct: 121 ALEDPTR--LEPAARELRVEHVLDDA-VTLGGIVDRLDVAPDGRIRIVDYKTGRSPDPRF 177

Query: 929 AQKLIDPQLSLEAAALKAG 947
               +  Q+   A  +   
Sbjct: 178 EASAL-FQMKFYALVVWRS 195


>gi|226314559|ref|YP_002774455.1| ATP-dependent nuclease subunit A [Brevibacillus brevis NBRC 100599]
 gi|226097509|dbj|BAH45951.1| ATP-dependent nuclease subunit A [Brevibacillus brevis NBRC 100599]
          Length = 1275

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 82/936 (8%), Positives = 223/936 (23%), Gaps = 159/936 (16%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            ++ + IE       + +    ++        A  +   S  +               +  
Sbjct: 315  ELAEQIEQYFSTPAEQYVADLQRIAPHMQTLARLVTAFSDAYQLEKRLRGLVDFGDLEHL 374

Query: 214  LMRAEAEH-------------LMKGTKGPIIIAGSTGSIPATARLMSTVANHP---NGAI 257
             +R   E               ++     +++            ++  V+        A 
Sbjct: 375  ALRVLTETNESGKTVPSSISTQLREQFAEVLVDEYQDINLVQETILQMVSRDGANGQPAN 434

Query: 258  VLPGLDCHIPTAIWNTITEKST-------------------------NITSSNTTYSTHP 292
                 D       +     K                               S        
Sbjct: 435  RFMVGDVKQSIYRFRLAEPKLFLEKYVTYQKDGDADEACIGRRIDLAANFRSRREVVDAV 494

Query: 293  QYSLAKLLDF------LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
             +   +++         D   E + R      +       +         +D     + E
Sbjct: 495  NFLFRQIMSHGVGEIGYDPSAELINRASYPEAQPNRLQAEMHLIDRNTVIADEGQAVVAE 554

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--------------------NK 386
                         +  EA   + EA  IA  +R  ++                       
Sbjct: 555  ATDEGEAGIPDGESAEEASVAQLEARLIASRIRRWMEPGEGEEPLLVFDKKAGGMRPLAY 614

Query: 387  KKSALITADRNLA-RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
            +   ++    +   + ++ EL   GI +                + SLL  I      + 
Sbjct: 615  RDIVILLRATSGWGQTMQEELHAAGIPVYAEQTAGYFAATEVETMLSLLRVIDNPLQDIP 674

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
            +A +++ P+       +                        +           ++    +
Sbjct: 675  LAAVLRSPIVGL---REQQLAQIRIHYATGPFHQAVLQYAEERPPQESWEKRLRQFFGRL 731

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL--------T 557
              W++          + ++      +  +   +  +       ++ D  +          
Sbjct: 732  GLWRTEARRGALSELLTMLYRETGYLDYVAALENGQQRQANLRALYDRARQYEAGSYRGL 791

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI--------- 608
               L+ V   +            G+    +    I     ++   +    +         
Sbjct: 792  FRFLRFVDRLQEAGNDMGEARTIGENEDVVRIMTIHKSKGLEFPVVFVAGMGKQFNTMDL 851

Query: 609  -----------ITRLIDGETVKPKIEKSSTLFILGTLESRLL----NFDTLILGGLNEGV 653
                          +    +++ +    + L I   L   +L        + L    E +
Sbjct: 852  KSQFLLHKDLGFGPMAVEPSMQLRYPSLAALGIRQKLRRDMLAEEMRVLYVALTRAREKL 911

Query: 654  WPKNTAKN--PFLSRVMQSDLNLKTAEKYIGQAAHDF----EMANGTRHLIYTRS----- 702
                ++K+    ++   + D + + +++ + QA                    R+     
Sbjct: 912  ILVGSSKDLAKSVTDWGRQDDSERLSDEDLIQAKGYLDWVGRAMLRHPGAGLLRAYPEQQ 971

Query: 703  -------LRENNIPTIASRWLQRLLVL--------GGTDFFDNLKKRGQCYLDWTRKLDY 747
                   +R     ++ S    +   L             ++ + +R       +  +  
Sbjct: 972  GSGDVVRVRSVPDDSVWSFHFYQADELRAQGESANHEASLWERMTRREAIAERPSDDILR 1031

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN-----DPYAVYARRILKLDFIPHFKKD 802
               +       P P        +S SE+K+         P  + +               
Sbjct: 1032 EIVEKRLGWQDPHPIAPRVAAKWSVSELKRHAKVSKGGQPLTLPSITEKPKFLSEQKSNR 1091

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                ++GT+ H +   L  KR   +  +I   +  +    F  +      + +      +
Sbjct: 1092 LTAAEKGTITHLVFQHLDLKRPL-DEADIREQVTALAAHRFLTD------EQVQAVDVPQ 1144

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIHLTGFADRIDLLKS 910
            I+  F +   +   S   +   +P  + +                + + G  D +     
Sbjct: 1145 IARFFADPLGQRMKSAAVVHRELPFTLVLPAYEVEAELGEESDEQVVVQGVIDCLLEEPD 1204

Query: 911  GFVDITDYKTG------DNPKKETAQKLIDPQLSLE 940
            G + + D+KT            E  ++  + Q+ L 
Sbjct: 1205 GSLVLIDFKTDWMAKEATAVAMEEMKRRYEGQIRLY 1240


>gi|317506021|ref|ZP_07963851.1| hypothetical protein HMPREF9336_00220 [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255679|gb|EFV14919.1| hypothetical protein HMPREF9336_00220 [Segniliparus rugosus ATCC
           BAA-974]
          Length = 288

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 70/239 (29%), Gaps = 17/239 (7%)

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
            ++    S S        P     R I ++   P          RGTL H  + +L+   
Sbjct: 10  PSRRLALSPSRASDFRQCPLLYRLRAIDRIPQPPTL-----AMVRGTLVHAALEDLLALP 64

Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS---FLE--HEEKIQSSI 878
               T +  H +          E    +   +      ++       L      +  +S+
Sbjct: 65  AESRTLDAAHGLVAPSWERVSGEMAEDNRLDLDEQGLEQLFEQSKTLLAGYFALEDPASV 124

Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
                 +  ++ +E   + L GF DR+D L  G + + DYKTG  P     +     Q+ 
Sbjct: 125 TPHACELRVEVELEP-DVPLRGFVDRVDELAGGELRVVDYKTGRAPGG-LYEAKALFQMK 182

Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
             A AL       +       L  + L     +       +            + +   
Sbjct: 183 FYALALWK-----LRGVVPNELRLMYLGSGDTLTYEPEPDELDRFSRTLVAIWRAIQAA 236


>gi|227549279|ref|ZP_03979328.1| RecB family exonuclease [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078598|gb|EEI16561.1| RecB family exonuclease [Corynebacterium lipophiloflavum DSM 44291]
          Length = 263

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 83/268 (30%), Gaps = 22/268 (8%)

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            + ++P   S S        P     R I +L          +   +GTL H ++ E+   
Sbjct: 1    MTSRPLALSPSRASDYKQCPLLYRFRAIDRLPEPKT-----EAQVKGTLVHAVLEEMHSW 55

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEK 880
            R  + T                +++      I  R      + + +      +     + 
Sbjct: 56   RREERTYPAAVKAIVPAWERLIEQDPEVAEPISDRQQLLVDARTLIRGYFHMENPLGFDS 115

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
                +     +   G+ + GF DR+D+  +G V + DYKTG  P           Q+   
Sbjct: 116  TEQEMYVDGVLP-NGVPVRGFIDRVDVAPTGEVRVVDYKTGKKPLPR-YSADAQFQMRFY 173

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
            A       F  I  +    L Y+++     +     +          E   ++L E+   
Sbjct: 174  ALVYWRF-FGAIPTQ--LRLMYLKVVDSMILTPSREE---------LEYFERDLGELWAK 221

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            ++   +      R S+       +  + 
Sbjct: 222  IEADGREGRFRPRTSK-LCNWCPFQDIC 248


>gi|120598717|ref|YP_963291.1| exodeoxyribonuclease V subunit gamma [Shewanella sp. W3-18-1]
 gi|120558810|gb|ABM24737.1| exodeoxyribonuclease V, gamma subunit [Shewanella sp. W3-18-1]
          Length = 1226

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 85/786 (10%), Positives = 191/786 (24%), Gaps = 100/786 (12%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   L    R    N  LL S  I V +      LR E  +  G  + +      L   
Sbjct: 12  VLCAHLAAYLRQSVPNTRLLRSEHILVQSPGMSTWLRLEIAKQNGIAAALE---FPLPSS 68

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL-------------- 130
              +    LL +       +      +L +L+                            
Sbjct: 69  FTWQLCHHLLPNVPKENAFTKAAMTWKLMQLLPRLLADDAFGPLRHYLGDLSLHTLGNIN 128

Query: 131 -YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW-------- 181
              E     P        L   +ADI D        W     +   +             
Sbjct: 129 GLDELAHQRPADDIKLYQLCGRIADIFDQYLVYRPDW-----MLAWEQNQHPTTLNKPLN 183

Query: 182 --LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTG 237
                   L  A   +    +  +         AL+ A  +    +      + + G + 
Sbjct: 184 EDQRWQPILWRALVAFNRDELNQSHYHRANLHSALIEALNDPNTSLTPLPQRLFVFGISS 243

Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTA----------IWNTITEKSTNITSSNTT 287
             P T  ++  +A+  +  I+      H                    ++       +  
Sbjct: 244 MAPQTLEVLYHLASRIDVIILSLSPCQHYWGDIIDPRHRARMAVQYAGKRQLAEQWEDKL 303

Query: 288 YSTHPQYSL-----AKLLDFLDIKREDVKRLGNV---SNEMYGRSMVISKSFLPPDTSDM 339
              +P  +       +LLD L     +    G+                 S L     D+
Sbjct: 304 EVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNDPASHASMLHGVQYDI 363

Query: 340 RNTDILENKIPNIQKCFSDVALI-------------EADNEREEAISIAIALRMSLDENK 386
                L++ +      + ++A                  +   E  ++   L   L  + 
Sbjct: 364 LEMQTLDSVLGPDAALYQNIAARRILKKDDESILVKSCHSPLREVETLHDHLLDMLSRHP 423

Query: 387 K----KSALITADRNLARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAI 437
           +       ++  D          +             I+       +   +   +LL   
Sbjct: 424 QLSPKDIVVMMPDVAAYAPYIDAVFAAKQGLHYIPYAIADRGAAQESPLINSFLNLLGIN 483

Query: 438 FKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGNKNS--------YDIMD 487
                   I ++++ P  L +F   +  L   +  L+   +R  ++              
Sbjct: 484 QSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRDQQSRLKQGVPAFEQ 543

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                  +               +       +       + + +  +      +      
Sbjct: 544 NSWAFGIKRLILGYALSDDAPLYQDHLVVTGIEGQSAQALGKLLNFIEALDETQQILEKP 603

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNL------------WFEEEGKTLSSLFSKIIETG 595
            + +       T L      +  +   L                 GK + +L +   +  
Sbjct: 604 QTGAVRLMELTTLLDAFYDTDEDEREQLQDIRDAIATLEQELLSAGKPIEALSTAQADIA 663

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
           + +  +         + +    V  +     ++     +  R + F  + L G+N+GV+P
Sbjct: 664 TSLTLSIEVLQQWFNQRLTESRVGQRYLAG-SVNFCTLMPMRSIPFKLVCLLGMNDGVYP 722

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIAS 713
           +      F             + +   +      + +    L  +   R   +N   IAS
Sbjct: 723 RVQHPVGFDLMAHFGPRKGDRSRRLDDRYLFLEALLSAREQLYISYIGRSERDNSERIAS 782

Query: 714 RWLQRL 719
             +  L
Sbjct: 783 MLVSEL 788


>gi|254037294|ref|ZP_04871371.1| I DNA and RNA helicase [Escherichia sp. 1_1_43]
 gi|226840400|gb|EEH72402.1| I DNA and RNA helicase [Escherichia sp. 1_1_43]
          Length = 1131

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 87/921 (9%), Positives = 228/921 (24%), Gaps = 135/921 (14%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT--GK 70
            P +   + ++   + G L +              + +   + +A  E+      +     
Sbjct: 213  PGTGKTQTLV-GRVKGLLSDGVDPR--------KILLLTFSNKAAGEMAERIARVDTEAA 263

Query: 71   KSTILPIIKSLGDVVEE-KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129
             +     I +      +        L+  L+P + +    +EL        + +      
Sbjct: 264  AAIW---IGTFHSFGLDLIRRFHDELNLPLDPRLLDRTEAVELLEHEFPVLDLVHYRNLY 320

Query: 130  LYPESPLSLPISPANAIW---LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
                    +    + A      AK    +   +       ED+               A 
Sbjct: 321  DPTRMIADILTGISRAKDEVVDAKTYLALAQAMRDRAVGIEDIAT----------AEKAI 370

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPA 241
             +      +     +             +    E+       + T   +++        +
Sbjct: 371  EVAKVYATYETLKKQARCIDFGDLVSLPVTLLEENEAIRSHIQSTYEHVLVDEYQDVNHS 430

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            + RL+  +    +G  +    D       +   +  +     +   +    +Y L     
Sbjct: 431  SVRLLKALCG--DGENLWVVGDAKQSIYRFRGASSFNMTRFGNED-FPGGLRYRLKTNYR 487

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                          V   +   S       +    SD+      + + P ++        
Sbjct: 488  S-------------VPEIVSAFSNFALNMAVGDADSDLNAERKSDAQKPELRCVDQG--F 532

Query: 362  IEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            ++A +       IA A++   +        A++         +  +L   GI +      
Sbjct: 533  LQAPS-------IADAIKEMQNSGYKYSDQAILCTGNEKLSEIGQQLELLGIPV------ 579

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
                         L +   +  +     TL+                  +   +  +R  
Sbjct: 580  -----------LYLGSVFERP-EIKDWLTLLS--------------LLVDRRAMGLVRIA 613

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                  M L  +       +++ T           +  +     ++ +++ ++       
Sbjct: 614  CLPEFTMSLDDVGSILTHLREDETGSDWKTKIDDFQISDDGRTALNRLVKTLSGFSA--N 671

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
            +   +     + D T++      +       +    W  +    L +             
Sbjct: 672  DSPWSVLATVLLDRTRIAARMATSTNCSVRSQCIATW--QLLNFLRAQPLSGEGVFITRT 729

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             + I  +  +    D   +    +    + ++    ++ L F  + L G+N    P N  
Sbjct: 730  LDRIRRLVRLGDDRDLRQLPTAAQSIDAVRLMTIHGAKGLEFPVIHLPGMNADTLPGNPQ 789

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAA------HDFEMANGTRHLIYTRSLRENNIPTIA- 712
            K                A++              +   +     ++  +   N   +   
Sbjct: 790  KQVCPPPNGMIAGGGSNAKEQFNLEYKAERECLFYVALSRAEDRLFLYATTRNAAGSTRK 849

Query: 713  -SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
             S +L R+    G     N  K     ++    L             P   + +     S
Sbjct: 850  LSDFLNRI----GPSLVQNNVKPLHAVIEKPESL-------------PVDWVISGDLVLS 892

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
             ++I    + P   +   IL++             D      N+  EL      K T   
Sbjct: 893  GAQISLYESCPRRFFYTHILQIGGRRTPTPFLKMHD---AVRNVFQELANTAPVKITDIE 949

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
            + + +        +    P    +       + + F    E   S    +       + +
Sbjct: 950  DRVTQAFTIEGLAEHGYAPEFKSL----AIGMVNYFASIRESHNSEATCV-----FTIKL 1000

Query: 892  ESIGIHLTGFADRIDLLKSGF 912
                I +    D + +   G 
Sbjct: 1001 GETFITI--QPDDVLVHPDGR 1019


>gi|260434920|ref|ZP_05788890.1| exodeoxyribonuclease V, gamma subunit [Synechococcus sp. WH 8109]
 gi|260412794|gb|EEX06090.1| exodeoxyribonuclease V, gamma subunit [Synechococcus sp. WH 8109]
          Length = 1080

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 92/877 (10%), Positives = 200/877 (22%), Gaps = 78/877 (8%)

Query: 19  REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78
            E +  LL+  L+E        P  L +V + V T    + L  +     G  S +    
Sbjct: 10  AEFLARLLSRQLIE------QQPGPLETVEVMVNTWPTSRWLGEQLATANGISSLV--RF 61

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
              G          +    +L     +  R  +L   +L    +L +          L+ 
Sbjct: 62  PFPGS----HLRQLVRQVLHLPAQEDDPWRAGQLVWAVLELLPELLEQPVAHPLRIWLTQ 117

Query: 139 PISPA-----NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193
               A     +   LA+ +AD +D         + L   K  +    W            
Sbjct: 118 REGTASGLTRDRWQLARTIADAMDDYALYR--PDQLEQWKRARPDDDWQPVL-------- 167

Query: 194 YWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVAN 251
            W      L  +         +       +        + + G +   P    L+  ++ 
Sbjct: 168 -WRLLAQRLPRAPFGLQVREAVDRLRRGDVDPALLPQRLRLFGISALAPVQVDLIQALSG 226

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                I L      +     +       +               L  +L  +  + + + 
Sbjct: 227 LLEVEIYLLTPCPDLWQRCGSRRASLGDDWLVPPDGGWLSEAPRLEAVLGRMGAEFQQLL 286

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-----------DILENKIPNIQKCFSDVA 360
                +         +    L    ++ R             D               + 
Sbjct: 287 EGSGEAQLGERSEGDLFAGSLQIAAAEERQPTLLDQLQQQLVDADSVPALERSSADQSLL 346

Query: 361 LIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLELTRFGINIDIS 416
              A     E   +   +   L    D   +   ++T        +   +      I + 
Sbjct: 347 FQAAPGPWREVQLVRDRILQWLAADPDLAPRDVLVMTPQIERYAPLLSSVFNDTAAIGVD 406

Query: 417 AGIPLSTTL------HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF----PEKYLSR 466
               L+          S  + +LL           +  L+ +P  +        E  L  
Sbjct: 407 LPWRLTDRSQQGSPGLSMAMFTLLELAATRLTATGLERLLANPALQGQQGLTPEEAVLIT 466

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                       +       ++ SL                     +        L  D 
Sbjct: 467 HTLQRSGFRWGLDGRERGGDEVHSLRWCLDRWLLGLVLPVEPGLAPAGAAPFQQELDPDR 526

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           +++  T L       +          W +L  + LQ +  +                   
Sbjct: 527 LVRWWTLLDRLARMFDRLRQPRPCHAWVQLLRSLLQELFAEGGAWADESQSWAAALEEWR 586

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
               +      +  +A   ++++   +  ++ +    +S  L I      R +    ++L
Sbjct: 587 ----LRAHDCPLDLDAAVALEVLQEALSVDSGRFGH-RSGALTISALEPMRAIPHKVVVL 641

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
            GL+   +P+ + +  F     Q  L    +            + +  RHL+ +   R  
Sbjct: 642 MGLDSADFPRPSRRPGFHLLEQQRRLGDPRSSDQDRYV-LLEALMSARRHLLISWCGRLE 700

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                                 +      Q  L                 P        +
Sbjct: 701 RTG----------ESQPPAAPVEQWLAVLQEQLQRAGASTEGLLITPAANPLSRENFRPE 750

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
                               A    +        +         L H       +  +  
Sbjct: 751 APLSCDRRQLDARRCLDRATASAQDEGLAWVSLWQQ-------DLTHYEAEGRDRDDLAL 803

Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
           +   +   M+Q   +  +   L P   I        +
Sbjct: 804 DPEALLAWMQQPQKAWLQARGLRPGEGIEAVEDLEAL 840


>gi|268315971|ref|YP_003289690.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
 gi|262333505|gb|ACY47302.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
          Length = 768

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 89/717 (12%), Positives = 195/717 (27%), Gaps = 104/717 (14%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+      + G ++     + +   +       +             
Sbjct: 77  QILALTFTNKAAREMMERIERLVGAEAARHIWMGTFHAIFARILRREGHRIGYTPD---- 132

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                        +     D  + L  E      I P       + +  +I   + +   
Sbjct: 133 -------------FSIYDTDDSERLLRELMARYHIDPRQYSP--RTIRHLISGAKNQMIG 177

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK- 224
            E+   L           AA       +   +    L+    +   I L     + L + 
Sbjct: 178 PEEYARLVA---SPVQEKAAKLYGPYQEALRKA-NALDFDDLLLKPIELFEQHPDVLQRY 233

Query: 225 -GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                 + I     +  A   L   +A       V+   D       +      +     
Sbjct: 234 QERWRYLHIDEYQDTNRAQYVLARKLAAAHRNLCVV--GDDAQSIYAFRGADIGNILSF- 290

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                  +P  ++ +L       R                           +     N D
Sbjct: 291 ----QRDYPDATVIRLEQNYRSTRR---------------------ILKLAEAIIQHNRD 325

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLAR 400
            LE ++         + LIEA +ER+EA  +   +R          +  A++      +R
Sbjct: 326 QLEKRLWTENPEGDPIVLIEALSERDEAQKVEQRIRDLHVRYGYAFRDFAVLYRTNAQSR 385

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            ++  L R GI   +  G+          + + L  +   +D  ++  ++ +P       
Sbjct: 386 SLEEALRRGGIPYRVVGGLSFYQRKEIKDVLAYLRLLVNPHDAASLQRVINYP------A 439

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                R    L   A +   + +  ++    V      QK         +R + +   + 
Sbjct: 440 RGIGQRTIEVLADYARQHGLSLWQAIERVEEVGLPTRAQKAVQEFHFLIARHAAKMDAMP 499

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
           V  +   L   + L+     + +        +  +L     + V     +   + + +E 
Sbjct: 500 VDELARSLLQESGLLEELRREGTPEALARWENVQELLNAIAEYVATAGEQATLSGFLQE- 558

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
                                    + ++T L        ++ + + + ++    S+ L 
Sbjct: 559 -------------------------VALLTDL-------DEMPEDNRVTLMTLHASKGLE 586

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
           F  + + GL EG++P   A         +  L      +        +           +
Sbjct: 587 FPVVFITGLEEGLFPLAQATQDRKDLEEERRLFYVGVTRAQRHLFLCYAR---------S 637

Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
           R       P++ SR+L+ L             +RG+      R   Y    PHY R 
Sbjct: 638 RYRYGEQQPSVRSRFLEELDTDVIVTEAGLPFRRGEVLDRRPRSERYVEMDPHYYRR 694


>gi|158522931|ref|YP_001530801.1| hypothetical protein Dole_2921 [Desulfococcus oleovorans Hxd3]
 gi|158511757|gb|ABW68724.1| conserved hypothetical protein [Desulfococcus oleovorans Hxd3]
          Length = 274

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 61/195 (31%), Gaps = 18/195 (9%)

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
           Q    S S I   ++   + Y  RI+ +         P     G+  H ++ E  +   N
Sbjct: 8   QQPHLSASAISGYMDCGLSYYLGRIIGVSP----DFTPAPLVFGSAVHAVLAEFYQALAN 63

Query: 826 --KNTPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
             + +      + +       +               +       +     +  E    +
Sbjct: 64  GKRLSARTLGALFEHYWQQMAEDRNDIQYKPGQDYASLLLEGKELVVTFCHQLPED---T 120

Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT-GDNPKKETAQKLIDPQ 936
              I +  P    +E + + + G  D +    +G + I D+KT           K  + Q
Sbjct: 121 GTIIGIEEPFAFELEGLPMPIIGAYDLVLEDAAGTITIVDHKTSSRAFSNADMDK--NLQ 178

Query: 937 LSLEAAALKAGSFSQ 951
           L++   A +A  F+ 
Sbjct: 179 LTIYQMAARANGFAG 193


>gi|323351323|ref|ZP_08086979.1| exonuclease RexA [Streptococcus sanguinis VMC66]
 gi|322122547|gb|EFX94258.1| exonuclease RexA [Streptococcus sanguinis VMC66]
          Length = 1224

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 91/854 (10%), Positives = 205/854 (24%), Gaps = 107/854 (12%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGST 236
             L  DF+   ++ + ER    NA          +             +     +++    
Sbjct: 366  ELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEILETFPEVRRFYQERYHEVMVDEYQ 425

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS- 295
             +     R++  +A    G       D       +     +  +            Q   
Sbjct: 426  DTNHTQERMLDLLAR---GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKL 481

Query: 296  ------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                      L+ L+   +  KRL +        +         P   +    +     I
Sbjct: 482  IVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPVKREPNLANRASFLI 541

Query: 350  PNIQKCFSDVALIEA---DNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK 403
                K   +    E         E   +   +    +E     K   L+TA R     + 
Sbjct: 542  YEGSKESPEEEADEGLPQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLIL 601

Query: 404  LELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                +  I +    G      ++   ++   L  I    +  A+  L+K P+  FG  E 
Sbjct: 602  AAFEQHQIPLVPDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDEL 661

Query: 463  YLSRAKNALEL---VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                 + + E           N      L   ++ +   +K        Q   +      
Sbjct: 662  ARLSLQASQERSQENLYEKLLNVLQGRGLNPALVTQELQKKLQHFHETLQGWRTYSKTHS 721

Query: 520  AVLLVDHI---LQCITPLVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNL 575
               L+  I         + T            ++S    +   +  + +          L
Sbjct: 722  LYDLIWKIYQDRFYYDMVGTLTNGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRIL 781

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              + +    S   +   +    +  +  + ++     +         + SS+  IL   +
Sbjct: 782  ENQHDL--ASVPVAVPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTK 839

Query: 636  SRL--LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
                    D  +             + +    +   ++L L +  + +         A  
Sbjct: 840  GVGIKYVADVSVSVEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAET 899

Query: 694  TRHLI--------------------YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
              +L+                     + SLR          +  + +       ++    
Sbjct: 900  KLYLVGKGSQEALDKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFV 959

Query: 734  RGQCYLD------------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-IN 780
              +                    L    +    +R         Q  +   S I+   + 
Sbjct: 960  TDEELTAEEIGQINEPVLFPADDLANNRQTDDIRRALDILESVDQLNSQYRSAIELPSVR 1019

Query: 781  DPYAV--YARRILKLDFIPHFKKDPDRT-------------------DRGTLFHNIITEL 819
             P  +  +   I+ +D +    +                          G+  H ++  +
Sbjct: 1020 TPSQIKKFYEPIMDMDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRI 1079

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                        + L +   D   + +   P I   +     ++             + +
Sbjct: 1080 PLDSRPSMAVLRSALAQVQADEAVKNQIQLPKIASFFETDLGRLL----------IENSD 1129

Query: 880  KIFVNIPAKM----AIESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
            ++    P  M            L G  D   +       + + DYKT             
Sbjct: 1130 RVRREAPFAMLKQDEDSGQEFVLRGILDGYLLFED---RIILFDYKTDKYKDSSELIARY 1186

Query: 934  DPQLSLEAAALKAG 947
              QL L A AL   
Sbjct: 1187 HGQLDLYAQALSRS 1200


>gi|15835512|ref|NP_297271.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg]
 gi|270285695|ref|ZP_06195089.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg]
 gi|270289703|ref|ZP_06196005.1| ATP-dependent helicase PcrA [Chlamydia muridarum Weiss]
 gi|301337090|ref|ZP_07225292.1| ATP-dependent helicase PcrA [Chlamydia muridarum MopnTet14]
 gi|7190926|gb|AAF39692.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg]
          Length = 634

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 75/709 (10%), Positives = 184/709 (25%), Gaps = 122/709 (17%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE-FIEITGKKSTILPIIKSLGD 83
           +++  ++       L+P   + +     T +A +EL      +        +P++ +   
Sbjct: 34  VVSHRILYLIEEAQLDP---SQILAITFTNKAAKELNERVLTQCNFPDYRGIPMVSTFHS 90

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE--SPLSLPIS 141
           +                  V  ++R ++L      +        + L  +    L+L   
Sbjct: 91  LG-----------------VYILRRSIQLLDRQSNFAIYDQSDSEKLIKQCLRKLNLDNK 133

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
             NA+         I   +   +  EDL + +               +     + E+L  
Sbjct: 134 LCNAMQFT------ISQAKNRLQDPEDLDSREYPDPA----------RAVYTEYQEQLRA 177

Query: 202 LNASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
            NA           +       +         ++I     +  A   +   +A   N   
Sbjct: 178 ANALDFDDLLFLTEKLLRIPEIQQEYSNLWKALLIDEYQDTNHAQYLIAKRLAASHNNIF 237

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
           V+   D       W      +      +             L+  L+        +   +
Sbjct: 238 VV--GDPDQSIYSWRGANISNILNFEQDYP---------KALVVRLEENYRSCGTILEAA 286

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
           N +                    N+  L+  + +++     +      N+R+EA  +   
Sbjct: 287 NALI-----------------QNNSARLDKTLRSVKGPGDKIFCFTGKNDRDEAEQVLEE 329

Query: 378 LRMSL---DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
           +       D       ++      ++  +  L + G   +I  GI          + + L
Sbjct: 330 ISNLHSYKDIPLSHICILYRTNFQSQSFEAALLKRGYPYEIIGGISFYKRKEIQDILAFL 389

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                  D  A    +                                     + +  L 
Sbjct: 390 RLFSNNYDMAAFERTIG-------------------------------LKKCGIGATTLS 418

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            + +   +  +P  Q+     +K+   L         + L T+        GN  + ++ 
Sbjct: 419 SLMSYAKSMDLPILQACWDVLEKKPIRLTKKQQQGLFSYL-THFHQMEKLYGNCDLHEFI 477

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
             T+     + + +         +   + L +              ++    + +  L  
Sbjct: 478 NETIRITDYLAILKEDPETYDDRKNNLEQLLAETQIW-------GKSSENLPNFLEDLAL 530

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
             +          L ++    S+ L F  + L GL E + P   +K    +   +  L  
Sbjct: 531 KSSADETASSHDRLKLMTIHNSKGLEFPVVFLVGLEENLLPHANSKGMHENIEEERRLCY 590

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
               +            +  +      + R      + SR++  L    
Sbjct: 591 VGITRAQEYLY-----LSRAKTRFLWGTERT----MVPSRFISELPRAL 630


>gi|238784730|ref|ZP_04628733.1| DNA helicase II [Yersinia bercovieri ATCC 43970]
 gi|238714326|gb|EEQ06335.1| DNA helicase II [Yersinia bercovieri ATCC 43970]
          Length = 720

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 67/689 (9%), Positives = 155/689 (22%), Gaps = 125/689 (18%)

Query: 50  YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP---VS 104
              T +A  E+R     + G          I +   +      A   +  NL      + 
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGTSQGGMW---IGTFHGLAHRLLRAH-HMDANLPQDFQILD 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +  +L  L RL+                                           + E  
Sbjct: 116 SDDQLRLLKRLVKALNLDEKQWPPRQAMWYINGK---------------------KDEGL 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
           + + + +  N     W            + + E              +            
Sbjct: 155 RPQHIESYGNPVEATWLR--------IYQAYQEACDRAGLVDFAELLLRAHELWLNKPHI 206

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +       +  +A   + A V+   D       W     ++ 
Sbjct: 207 LNHYRERFTNILVDEFQDTNNIQYAWIRLLAG--DRANVMIVGDDDQSIYGWRGAQVENI 264

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +                            G  +  +       S      +    
Sbjct: 265 QRFLKDFP--------------------------GAETIRLEQNYRSTSNILTAANALIA 298

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397
            N   +   +         +++  A NE +EA  +   +R   D        A++     
Sbjct: 299 HNDGRMGKNLWTEGAEGEPISIYCAFNELDEARFVVNRIRAWQDNGGALNDCAILYRSNA 358

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L +  +   I  G             + L  +   ND  A   +V  P    
Sbjct: 359 QSRVLEEALLQTAMPYRIYGGQRFFERQEIKDALAYLRLVSNRNDDAAFERVVNTPTRGI 418

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G     + R          R          +    +                  L+ E  
Sbjct: 419 GDRTLDVVRQTAR-----DRQLTLWQSTRSMLQEKVLAGRAASALQRFVELVDSLAHETA 473

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           ++ + +    +   + L +    +    G   + +  +L     Q    DE +       
Sbjct: 474 DMPLHVQTDRVIRDSGLWSMYEQEKGEKGQARVENLEELVNATRQYSYQDEDQ------- 526

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                                  + +     ++                 + ++    ++
Sbjct: 527 -----------------------DLMPLQAFLSHAALEAGEGQADAYQDAVQLMTLHSAK 563

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + + G+ E           F S++   +      E+ +        M    + L
Sbjct: 564 GLEFPQVFIVGMEE---------GMFPSQMSLDEGGRLEEERRLAYVGVTRAM----QKL 610

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVL 722
               +         +    SR++  L   
Sbjct: 611 TLCYAENRRLYGKEVNHRPSRFIGELPPE 639


>gi|195978018|ref|YP_002123262.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974723|gb|ACG62249.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 765

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 81/694 (11%), Positives = 187/694 (26%), Gaps = 120/694 (17%)

Query: 46  SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-- 102
           ++     T +A +E+R          K T+   I +   +       +            
Sbjct: 54  NILAITFTNKAAREMRERALALSPATKDTL---IATFHSMCVRILRREADHIGYNRNFTI 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++             L P+       S    I  AKN  D++D     
Sbjct: 111 VDPGEQRTLMKRIVKALN---------LDPKKWSE--RSILATISNAKN--DLLDE-RAY 156

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
           E    DL++                     K + E L    A       +  +R   ++ 
Sbjct: 157 ELGASDLYSQTVA--------------RCYKAYQEELRRSEAMDFDDLIMMTLRLFDQNP 202

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L++ +A+      V+   D       W     +
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVTLLASRFKNICVV--GDADQSIYGWRGADMQ 260

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P   +  L +     ++ ++    V      R              
Sbjct: 261 NILDFEK-----DYPDARVVLLEENYRSTKKILQAANEVIQHNRHRRPK----------- 304

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
                     K+         +    A++ER+EA+ +A  +     E     K  A++  
Sbjct: 305 ----------KLWTQNADGEQIVYYRANDERDEAVFVASTISNMCLELGKSFKDFAVLYR 354

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + + L  +   +D ++   +V  P 
Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLTVVANPSDNISFERIVNEPK 414

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G       R                                          ++  S 
Sbjct: 415 RGVGPGTLDKLR-------------------------------QFAYGQEQSLLEAASSL 443

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           E   L       +L   + L   + + +            + +         +       
Sbjct: 444 EQSPLKGKAAQAMLALASLLSDLRADLDRLSITALAEALLEKSGYLDMLRVQNTLESQAR 503

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  +++  F  +       +A        +  L           +++ + ++   
Sbjct: 504 IENIEEFLSVTKSFDDVSAQQQEHEAGIDRLGRFLNDLALIADSDDGNAETAEVTLMTLH 563

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P   A               +  ++   +    +      
Sbjct: 564 AAKGLEFPVVFLIGMEEGVFPLARA--------------AEDQDELEEERRLAYVGITRA 609

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723
              ++     TR+L   +     +R+L+ +    
Sbjct: 610 EECLFLTNANTRTLFGKSSYNRPTRFLKEMSENL 643


>gi|158341049|ref|YP_001522216.1| hypothetical protein AM1_E0133 [Acaryochloris marina MBIC11017]
 gi|158311290|gb|ABW32902.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 262

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 69/235 (29%), Gaps = 26/235 (11%)

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
              + S +++K     P +   R   KL     F      T  G   H  +  + K    
Sbjct: 1   MSYSLSATKLKTYGQCPKSYQFRYEHKLPSPTIF----GSTKLGNALHAALANVYKDWNY 56

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
                       +   H   E  P  I   W          ++    +I+   + + +  
Sbjct: 57  AYPLPSLDWF-AVCWQHHTSELTPTQIHEGWAA-LQLYYERYIAPLPQIR---KPLGIET 111

Query: 886 PAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETAQKLIDPQLSLE 940
             +  ++       L+G  DR+D +  G +++ DYKT      P           QL   
Sbjct: 112 KVRATLQVRNIEFTLSGRYDRLDYIDDG-LELIDYKTSKSVNPPPSVDI------QLGFY 164

Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              L+      I  + +  L  I L+   K+           A  L E     L 
Sbjct: 165 YLILEQ-----IYKKALKRLSLIYLRSNEKLIYEVTPDHHQQAQSLIEDMAMKLR 214


>gi|116617682|ref|YP_818053.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096529|gb|ABJ61680.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 766

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/691 (8%), Positives = 165/691 (23%), Gaps = 121/691 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
            +     T +A +E+R    ++   +      + +   +       D      L      
Sbjct: 73  RILAITFTNKAAREMRERIAQLVDPEIAREIWVSTFHAMAVRILRRDGER-IGLARNFTI 131

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +    +   + R+I                 +  +       A   AK   ++ +    E
Sbjct: 132 IDTSAQRTLMKRVINDLNLDTNQYDPRTILGTVSNAKNDMLTAKAYAKQAGNVYEETVAE 191

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH- 221
                                           +   L    +       ++ +    +  
Sbjct: 192 ----------------------------VYAAYQAELRRAQSVDFDDLIMSTIDLFKQAP 223

Query: 222 ----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     + +     +  A   +++ +A       V+   D       W      
Sbjct: 224 DVLERYQNQFEYLHVDEYQDTNDAQYTIVNLLAKRSRNLAVV--GDADQSIYGWRGANMN 281

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +                               +  +              +  
Sbjct: 282 NILNFEKDYPD--------------------------AHTVLLEQNYRSTQNILDAANAV 315

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL---RMSLDENKKKSALITA 394
              N + ++  +         +    A  ER+EA  +   +   R   +      A++  
Sbjct: 316 INNNNERIDKSLWTENGKGDKITYYRAQTERDEANFVLANIQKSRQEKNAAYSDFAVLYR 375

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  +   +  G           + S +N +    D  A   +V  P 
Sbjct: 376 TNAQSRGIEEALVKANMPYTMVGGHKFYERKEILDIMSYMNLMTNPADNAAFERVVNEP- 434

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                            + +  ++R+    N  ++ +  +  + 
Sbjct: 435 ------------------------------KRGIGATSINRLRDFANRMNLSYMGAIENI 464

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL-DEHRKLP 573
           E            L     ++     +        +++         Q +   ++     
Sbjct: 465 ELAPEITAKAASKLIQFAEMMHNLRQQTEFLTVTELAELAMTKSGYRQKLAEKNDPESQG 524

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            L   EE  +++  F            + +   D ++       +    E    + ++  
Sbjct: 525 RLENLEEFLSVTKEFDSKYNPDDPESVDPMT--DFLSSTALMSDLDDFEEGDGAVTLMTL 582

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + L G+ EG++P + A              +   ++   +    +     
Sbjct: 583 HAAKGLEFPVVFLVGMEEGIFPLSRA--------------MMDDDQLEEERRLAYVGITR 628

Query: 694 T-RHLIYTRSLRE----NNIPTIASRWLQRL 719
             + L  T +              SR++  +
Sbjct: 629 AMKKLYLTNAFSRLLYGRTQANEPSRFIDEI 659


>gi|29566091|ref|NP_817661.1| gp72 [Mycobacterium phage Bxz2]
 gi|29424816|gb|AAN01826.1| gp72 [Mycobacterium phage Bxz2]
          Length = 271

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 84/280 (30%), Gaps = 54/280 (19%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S S++KQ    PY+    R+ K+   P          +G+  H ++ E  ++R     P 
Sbjct: 9    SVSQLKQYERCPYSYKLARVDKVWQRPAAWLP-----QGSAVHTVLEE-YRRRELDGDPM 62

Query: 831  INHLMKQIIDSHFEKE--------------------NLPPHIDIIWRHLFHKISHSFLEH 870
                 +++    + KE                    +    ++  W     +I   F   
Sbjct: 63   SLEEAQEMFKEEYAKEVSQYTDVTPNFDWWFRSGRYDGASDLERRWHIGLEQI-EKFFAW 121

Query: 871  EEKI-------QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
             E                 + +   + ++  G+ + G+ D +     G V + DYKTG+ 
Sbjct: 122  TEGHPEEVIWIAPDGTP-GIELGFDIDLD--GVLVRGYIDTVLRDSDGNVIVRDYKTGNT 178

Query: 924  PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
            P         D QL + + AL       I+  ++ +  Y    +K      T        
Sbjct: 179  P-------GDDFQLGVYSVALAET--YGIEPPQIGD--YYMAGKKGVKGKPTYPYDLGEW 227

Query: 984  DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
                E+  +   E+   +                     +
Sbjct: 228  P--RERVAEKFRELEENIAAERF----DPDPEPDKCAFCD 261


>gi|15609256|ref|NP_216635.1| hypothetical protein Rv2119 [Mycobacterium tuberculosis H37Rv]
 gi|15841611|ref|NP_336648.1| hypothetical protein MT2179 [Mycobacterium tuberculosis CDC1551]
 gi|31793299|ref|NP_855792.1| hypothetical protein Mb2143 [Mycobacterium bovis AF2122/97]
 gi|121638001|ref|YP_978225.1| hypothetical protein BCG_2136 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148661934|ref|YP_001283457.1| hypothetical protein MRA_2134 [Mycobacterium tuberculosis H37Ra]
 gi|148823330|ref|YP_001288084.1| hypothetical protein TBFG_12151 [Mycobacterium tuberculosis F11]
 gi|167967471|ref|ZP_02549748.1| hypothetical protein MtubH3_05317 [Mycobacterium tuberculosis
           H37Ra]
 gi|215403503|ref|ZP_03415684.1| hypothetical protein Mtub0_07428 [Mycobacterium tuberculosis
           02_1987]
 gi|215411823|ref|ZP_03420615.1| hypothetical protein Mtub9_10924 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215431043|ref|ZP_03428962.1| hypothetical protein MtubE_10285 [Mycobacterium tuberculosis
           EAS054]
 gi|215446344|ref|ZP_03433096.1| hypothetical protein MtubT_10528 [Mycobacterium tuberculosis T85]
 gi|218753841|ref|ZP_03532637.1| hypothetical protein MtubG1_10544 [Mycobacterium tuberculosis GM
           1503]
 gi|219558092|ref|ZP_03537168.1| hypothetical protein MtubT1_12642 [Mycobacterium tuberculosis T17]
 gi|224990495|ref|YP_002645182.1| hypothetical protein JTY_2130 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798819|ref|YP_003031820.1| hypothetical protein TBMG_01861 [Mycobacterium tuberculosis KZN
           1435]
 gi|254232279|ref|ZP_04925606.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254364926|ref|ZP_04980972.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551151|ref|ZP_05141598.1| hypothetical protein Mtube_11916 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187107|ref|ZP_05764581.1| hypothetical protein MtubCP_13883 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201228|ref|ZP_05768719.1| hypothetical protein MtubT4_14214 [Mycobacterium tuberculosis T46]
 gi|289443622|ref|ZP_06433366.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289447739|ref|ZP_06437483.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554095|ref|ZP_06443305.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289570232|ref|ZP_06450459.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289745392|ref|ZP_06504770.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289754227|ref|ZP_06513605.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289758237|ref|ZP_06517615.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289762281|ref|ZP_06521659.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294993528|ref|ZP_06799219.1| RecB family exonuclease [Mycobacterium tuberculosis 210]
 gi|297634704|ref|ZP_06952484.1| RecB family exonuclease [Mycobacterium tuberculosis KZN 4207]
 gi|297731692|ref|ZP_06960810.1| RecB family exonuclease [Mycobacterium tuberculosis KZN R506]
 gi|298525615|ref|ZP_07013024.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776366|ref|ZP_07414703.1| hypothetical protein TMAG_00304 [Mycobacterium tuberculosis
           SUMu001]
 gi|306780145|ref|ZP_07418482.1| hypothetical protein TMBG_00665 [Mycobacterium tuberculosis
           SUMu002]
 gi|306784889|ref|ZP_07423211.1| hypothetical protein TMCG_00212 [Mycobacterium tuberculosis
           SUMu003]
 gi|306789256|ref|ZP_07427578.1| hypothetical protein TMDG_00596 [Mycobacterium tuberculosis
           SUMu004]
 gi|306793585|ref|ZP_07431887.1| hypothetical protein TMEG_02484 [Mycobacterium tuberculosis
           SUMu005]
 gi|306797974|ref|ZP_07436276.1| hypothetical protein TMFG_01078 [Mycobacterium tuberculosis
           SUMu006]
 gi|306803854|ref|ZP_07440522.1| hypothetical protein TMHG_01306 [Mycobacterium tuberculosis
           SUMu008]
 gi|306808426|ref|ZP_07445094.1| hypothetical protein TMGG_00674 [Mycobacterium tuberculosis
           SUMu007]
 gi|306968249|ref|ZP_07480910.1| hypothetical protein TMIG_00784 [Mycobacterium tuberculosis
           SUMu009]
 gi|306972477|ref|ZP_07485138.1| hypothetical protein TMJG_00379 [Mycobacterium tuberculosis
           SUMu010]
 gi|307080187|ref|ZP_07489357.1| hypothetical protein TMKG_00379 [Mycobacterium tuberculosis
           SUMu011]
 gi|307084767|ref|ZP_07493880.1| hypothetical protein TMLG_03740 [Mycobacterium tuberculosis
           SUMu012]
 gi|313659027|ref|ZP_07815907.1| RecB family exonuclease [Mycobacterium tuberculosis KZN V2475]
 gi|2253059|emb|CAB10709.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13881861|gb|AAK46462.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|31618891|emb|CAD96996.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493649|emb|CAL72124.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124601338|gb|EAY60348.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134150440|gb|EBA42485.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506086|gb|ABQ73895.1| hypothetical protein MRA_2134 [Mycobacterium tuberculosis H37Ra]
 gi|148721857|gb|ABR06482.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224773608|dbj|BAH26414.1| hypothetical protein JTY_2130 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253320322|gb|ACT24925.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289416541|gb|EFD13781.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289420697|gb|EFD17898.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438727|gb|EFD21220.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289543986|gb|EFD47634.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289685920|gb|EFD53408.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289694814|gb|EFD62243.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289709787|gb|EFD73803.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289713801|gb|EFD77813.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495409|gb|EFI30703.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308215212|gb|EFO74611.1| hypothetical protein TMAG_00304 [Mycobacterium tuberculosis
           SUMu001]
 gi|308326972|gb|EFP15823.1| hypothetical protein TMBG_00665 [Mycobacterium tuberculosis
           SUMu002]
 gi|308330406|gb|EFP19257.1| hypothetical protein TMCG_00212 [Mycobacterium tuberculosis
           SUMu003]
 gi|308334241|gb|EFP23092.1| hypothetical protein TMDG_00596 [Mycobacterium tuberculosis
           SUMu004]
 gi|308338042|gb|EFP26893.1| hypothetical protein TMEG_02484 [Mycobacterium tuberculosis
           SUMu005]
 gi|308341727|gb|EFP30578.1| hypothetical protein TMFG_01078 [Mycobacterium tuberculosis
           SUMu006]
 gi|308345217|gb|EFP34068.1| hypothetical protein TMGG_00674 [Mycobacterium tuberculosis
           SUMu007]
 gi|308349520|gb|EFP38371.1| hypothetical protein TMHG_01306 [Mycobacterium tuberculosis
           SUMu008]
 gi|308354150|gb|EFP43001.1| hypothetical protein TMIG_00784 [Mycobacterium tuberculosis
           SUMu009]
 gi|308358088|gb|EFP46939.1| hypothetical protein TMJG_00379 [Mycobacterium tuberculosis
           SUMu010]
 gi|308362022|gb|EFP50873.1| hypothetical protein TMKG_00379 [Mycobacterium tuberculosis
           SUMu011]
 gi|308365670|gb|EFP54521.1| hypothetical protein TMLG_03740 [Mycobacterium tuberculosis
           SUMu012]
 gi|323719332|gb|EGB28473.1| hypothetical protein TMMG_01396 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326903734|gb|EGE50667.1| hypothetical protein TBPG_01616 [Mycobacterium tuberculosis W-148]
 gi|328458580|gb|AEB04003.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 278

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 67/248 (27%), Gaps = 21/248 (8%)

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
              P         S S        P     R I +L              RG++ H  + 
Sbjct: 2   ADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPE-----ATSAAQLRGSVVHAALE 56

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENL------PPHIDIIWRHLFHKISHSFLEHE 871
           +L        +P+    + Q                  P            +   +  + 
Sbjct: 57  QLYGLPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGY--YR 114

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
            +  +  +        ++ +    + L G+ DRID+  +G + + DYKTG  P    A  
Sbjct: 115 LEDPTRFDPQCCEQRVEVELADGTL-LRGYIDRIDVAATGELRVVDYKTGKAPPAARALA 173

Query: 932 LID--PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
                 Q+   A AL               L  I L     +D   +  +    ++    
Sbjct: 174 EFKAMFQMKFYAVALFRS-----RGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMA 228

Query: 990 SLKNLIEI 997
             + +   
Sbjct: 229 IWRAIQSA 236


>gi|313115007|ref|ZP_07800500.1| putative ATP-dependent nuclease subunit A [Faecalibacterium cf.
            prausnitzii KLE1255]
 gi|310622698|gb|EFQ06160.1| putative ATP-dependent nuclease subunit A [Faecalibacterium cf.
            prausnitzii KLE1255]
          Length = 1240

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 90/914 (9%), Positives = 202/914 (22%), Gaps = 132/914 (14%)

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
            A     A   A + + I       E+                   ++     ++ +  E 
Sbjct: 326  AAVRTRADEAAKLFEHITELVSCSEEEAEADRRAALPRLRALFVAVRDFDARFSAKKKER 385

Query: 203  NASSPVGYQIALMRAEA---------EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
                   ++   +R               ++ +   +++     +      +   +A+ P
Sbjct: 386  KLLEFSDFEHQALRLLRTPDGVCTPLCQSIRQSYAAVMVDEYQDTNALQDAIYRCLAS-P 444

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE-DVKR 312
             G  +    D       +            +                          +  
Sbjct: 445  AGDDLFLVGDLKQSIYRFRQADPSIFRAKLNAWAPLPSGTARPRPAEGTPGTDALLALDA 504

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE-- 370
                + ++      I +  + P   D    D          +    V      ++  E  
Sbjct: 505  NFRSAPQVVAGINFIFEQLMTPQLGDTAYGDGQRLVCGAPGEYAGSVEAHFLPDDTAETD 564

Query: 371  AISIAIALRMSLDE-------------NKKKSALITADRNLARRVKLELTRFGINIDISA 417
            A  IA  +   +                 +   ++ A R      +  LT  GI +   A
Sbjct: 565  AAWIAQRVEELVKNGEPVRDGSSTRPVQYEDCCILLAARGDFLAYEEALTARGIPVYADA 624

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
               L    H   L SLL  I      + +A  +  P+  F   +    RA++A       
Sbjct: 625  RENLMEAAHIRPLISLLKVIDNPAQDIYLAAAMLGPMFGFTDDDLVRLRAQSAAMQKK-- 682

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                                T K  + +  + + L              +      L   
Sbjct: 683  -----------AQEEQGAKKTGKRASRMSLYGAVLQVVQNGDETPFTRKVKDFYDRLTAL 731

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
            +        +       +        +      +      E+  +  +            
Sbjct: 732  RRMAR----SAPAEQLLEEIFVSTGYLAALGVLENGAHRREDARRFAAFCAQTGAN---G 784

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            I A              G+   P   +   + I+    S+ L F  + +G         +
Sbjct: 785  ISALVRAIDAAAQAGSTGQDTVPGGARPGCVTIMTIHRSKGLQFPVVFVGDTARHFNLSD 844

Query: 658  TAKNPFLSRVMQSDLNLKTA--------------------EKYIGQAAHDFEMANGTRHL 697
            T +   L R   + L L+                      E    Q    +      +  
Sbjct: 845  TYQPVLLHREYGAGLRLRPEQGESMYKTAAYAALASVHAQETRSEQMRLLYVALTRAQDK 904

Query: 698  IYTRS------------------------------------------LRENNIPTIASRW 715
            +                                              +     P      
Sbjct: 905  LILTVPLGMTKTGNPFAKAAAFLAAGAGETLNQQAGSFADWLRAALLVHPFGGPLRRLAG 964

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
               L  +          +  Q   +   +     +             E     Y  +++
Sbjct: 965  DLELPFVFTESEIMVTVQEAQPEPETPEQEPEAAEPVPADPALVAQLQEGFAWRYPAAKL 1024

Query: 776  KQLIN----DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT--ELIKKRINKNTP 829
              +            A +          K      + GT  H  +   +       K   
Sbjct: 1025 AAVPAKVSVTSIVHKAEQTTLERPAFLSKDGLTAAEMGTALHAFLEHADFASLAAAKAAG 1084

Query: 830  EINHLMKQIIDSHFEKENLPPHIDI-IWRHLFHKISHS-----FLEHEEKIQSSIEKIFV 883
             +   +        +   + P I   +      + + S         E+ ++       +
Sbjct: 1085 TLEEAILAERQRQVDTRLVAPEIAEKLNAGRIRRFAESEAFAKICAAEKVLRELAFITAL 1144

Query: 884  NIPAKMA-----------IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
               A +            ++   + + G AD + +     +++ DYKT     +      
Sbjct: 1145 PASAVLTAQGASAQEAAAVQDEQVLVQGIADLVLVFPD-HLELLDYKTDRRKTEADFLSA 1203

Query: 933  IDPQLSLEAAALKA 946
              PQL+L A A+  
Sbjct: 1204 YRPQLNLYALAIDK 1217


>gi|229149444|ref|ZP_04277680.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1550]
 gi|228634086|gb|EEK90679.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1550]
          Length = 1166

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 97/893 (10%), Positives = 211/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KNDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVTIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLSDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 858

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLG-GTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             R       L + +IP     +     V     +     +   +   +    L      P
Sbjct: 859  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 918

Query: 753  HYKRPKPFPPLEAQPR-----------TYSFSEIKQ--LINDPYAVYARRILKL----DF 795
                 K         +             S +EIK+     D       + L+       
Sbjct: 919  LESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNAFIKKLRAPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIHLTGFAD 903
                  K+   F     K   + + +   +P  M +                I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGNSGESILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|126460955|ref|YP_001042069.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
            17029]
 gi|126102619|gb|ABN75297.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
            17029]
          Length = 1106

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 93/919 (10%), Positives = 208/919 (22%), Gaps = 116/919 (12%)

Query: 68   TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
             G ++  +P + +    +E     D   +  L            LA L  +         
Sbjct: 227  LGGEAEWMPALIA---ALEAGSANDQKAAAKLRLLSFASPTTATLAGLEGVLLTGASAKE 283

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
                         +      LA  L  ++  +E        L A +  +          F
Sbjct: 284  PYTAKLGSFPTKATRGALGPLADRLDALMRRVEAARPVRCCLLAAERARLIH------AF 337

Query: 188  LKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHLMKGTKGPIIIAGSTGSI 239
              +    +  R                        +       + G    I++  +  + 
Sbjct: 338  AGVFLPLYQARKAARGWLDFDDLIQRAKGLLTDPSVAQWVLFRLDGGIDHILVDEAQDTS 397

Query: 240  PATARLMSTVANHPNG--------AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
            P   +++  +A               +    D       +      + +   +       
Sbjct: 398  PDQWKVIELLAQEFTSGRGAREVERTIFVVGDKKQSIYSFQGADVAAFDRMRAEFGERLA 457

Query: 292  PQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                       L        I R           +  G  +                  +
Sbjct: 458  GARRRLEELDLLHSFRSSPAILRLVDLTFDEPRRQALGGEVRHIAFRGDMPGRAELWPLV 517

Query: 345  LENKIPNIQKCFSDVALIE-ADNEREEAISIAIALRMSLDE--------------NKKKS 389
               + P  +  F  V L+    +    A  +A  +R  ++                    
Sbjct: 518  EAAEEPEPENWFDPVDLVSDEHHAARLARQVATRIRAMIEAGVQIPQPGGFRPVAAGDFL 577

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
             L+    ++   +        + I  +  + L   L    L++LL  +    D +++A +
Sbjct: 578  ILVQRRSDIFGEIIRACKEARLPIAGADRLKLGAELAVRDLSALLAFLATPEDDLSLAAV 637

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
            ++ PL  +   E +        E    R   +          +L  +  Q +        
Sbjct: 638  LRSPLFGWSEGELFDLAHGR--EGYLWRRLYDREAAHPATVAILRDLRDQADFLRPFDLI 695

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
             R          LL     +    +    +   +                          
Sbjct: 696  ERALTRHDRRRRLLARLGEEAEDGIDELLSQALAYERT------------------DVPS 737

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                  W + +   +             +  +  + ++    ++     +   E+     
Sbjct: 738  LTGFLTWLQTDEVEVKRQMEAAGGRIRVMTVHGSKGLEAPIVILPDTADRKPRERDELFT 797

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
            + G           +      E       A+    +R    +L L               
Sbjct: 798  LEGGA--------RVWKTPAAESPPQIAAAREARRARDAAENLRL-------------LY 836

Query: 690  MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
            +A          +         A   L R  +          +  G   LD         
Sbjct: 837  VAMTRAQCWLIAAAAGKLETGGAWHDLIRQGMEAAGA---ERRDDGALVLDEGLWPPAAP 893

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
            +                    +       +  P A+   + L  D +P  +        G
Sbjct: 894  QASAAAAAARPVLPAWALAPAAEPPAAPEVLSPSALGGAKALPGDAMPTEE----ALAHG 949

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            +  H ++  L              L+  + D                       + + L 
Sbjct: 950  SAVHRLLEHLPLHPPEGWEAAARGLLPDLPDVAP----------------VLAEARAVLS 993

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKE 927
             E   ++ +    + +     +      L+G  DR+ +     V   DYKT      + E
Sbjct: 994  AEHLAEALVPHALLEVAVTAKVAGR--RLSGTIDRLVVEPD-RVLAVDYKTNRVVPDRPE 1050

Query: 928  TAQKLIDPQLSLEAAALKA 946
               + I  Q+   A AL  
Sbjct: 1051 EVPEGILRQMGAYAEALAQ 1069


>gi|299138774|ref|ZP_07031952.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
 gi|298599410|gb|EFI55570.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
          Length = 1202

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 90/873 (10%), Positives = 197/873 (22%), Gaps = 110/873 (12%)

Query: 150  KNLADIIDIIETEEK--KWEDLHALKNEKY-GMWWLLAADFLKIASKYWTERL---VELN 203
            + L  +I+ I+ +        L AL   +Y    W +A    ++      E      E  
Sbjct: 337  EQLVQLIESIQNDRLLDALHALRALPPARYPDGQWEVAKALFRLLLHALAELKVLFAERG 396

Query: 204  ASSPVGYQIALMR--------AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                    +A           A+       T   +++     +  +   L+  +    +G
Sbjct: 397  ECDFAELALAAREALRADDGPADLAGSSGATLRHLLVDEMQDTSSSQYELIELLTRSWDG 456

Query: 256  A--IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
                +    D      ++     +    T    +    P   L    +F           
Sbjct: 457  HSQTLFLVGDPKQSIYLFRQARVERFMRTMQEASLGDVPVGVLRLTSNFRSQATLVEDFN 516

Query: 314  GNVSNEMYGRSM-VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN---ERE 369
            G  S    G    + S++   P  +         ++            +  A       +
Sbjct: 517  GAFSRIFPGADATLSSEAIDVPFVAATAVRQKTTSEGIVWHTAMLGEEIESAPTNNPRND 576

Query: 370  EAISIAIALRMSLDENKK-----------KSALITADRNLARRVKLELTRFG-----INI 413
             A+  A  +R  ++  ++           + A++   R     +  E  R       I  
Sbjct: 577  HALLEARRIRQIVEHWQQKPLPEGRTQPWRIAVLARARRHLAPIVAEFQRNEAAHPPIPF 636

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
                   L          +L  A+    D +A   ++  P    G  +            
Sbjct: 637  RAVKVEALDERPEVLDALALTRALLHPADRVAWLAVLHAPWCGLGIADLLAL-------T 689

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                   +S  I  L       ++ +        W    +   +     +   I +    
Sbjct: 690  GEGSSPASSDTIPALIESSESYLSNEGRALLTRAWPILRTALGESGRGDIAVRIERTWRS 749

Query: 534  LV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
            L                     +                +     +   + L +  +   
Sbjct: 750  LGGDVLLQPEQRTNVQHFFALLRELEQ--------PGGWIDLRALKTRLEKLFAEPASGE 801

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
                 +  +  + ++    ++     + +  +S  L  L      +     ++       
Sbjct: 802  VAVELMTIHTAKGLEWDVVIVPALEKRGQTSRSDLLNWLELDGDDVTGPSIVLAP----- 856

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH---LIYTRSLRENNIP 709
            ++ K +  +     +       + AE+        +      R    L  T         
Sbjct: 857  IYGKGSDPDELYKWLNHIRNAREEAERK----RLYYVACTRAREELHLFATCERTSKGEI 912

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKR-------------GQCYLDWTRKLDYTTKQPHYKR 756
                  L           FD   +              G+           T   P    
Sbjct: 913  KPPIGTLLYSCWPAAQKHFDAWLEAPPSNLEGQLKQSLGEDESAEGIVPTATPGTPQISG 972

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
            P     L                  PY   A  + +       +        G + H  +
Sbjct: 973  PPLIHRLPLTFNPLQRFAEAAEHRLPYL-SASALRQTPNFERPEGSFAVRAFGNVVHRFL 1031

Query: 817  TELIKKRINKNTPEINHLMKQIID----SHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
              L  +  +  T +         +    +    E L P +         +     L  + 
Sbjct: 1032 QVLATRLTSGTTADQLLAELGSWEPRLLASLRGEGLAPALCQREASRALQALVQTLSDDI 1091

Query: 873  KIQ-----------SSIEKIFVNIP---AKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                           +        P              L+        + S  + I D+
Sbjct: 1092 GRWILMPQPTAVSERAFTFAAAESPTLRVDRTFPGGTAPLS--------VGSEALWIVDF 1143

Query: 919  KT---GDNPK---KETAQKLIDPQLSLEAAALK 945
            KT   G        E  +    PQ+   AA  +
Sbjct: 1144 KTTEQGSRSAERFAEDERAKYSPQMESYAAVCR 1176


>gi|183984523|ref|YP_001852814.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M]
 gi|183177849|gb|ACC42959.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M]
          Length = 769

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 84/771 (10%), Positives = 189/771 (24%), Gaps = 108/771 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R   + + G ++  +  + +              L       + 
Sbjct: 60  GQILAITFTNKAAAEMRERVVSLVGGRAKYM-WVSTFHSTCVRILRNQAAL-------IK 111

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            +     +       R  L  I +D+  +     P            LA+ I  ++ E  
Sbjct: 112 GLNSNFSIYDADDS-RRLLQMIGRDMGLDIKRYSPRL----------LANAISNLKNELI 160

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----A 219
             +                 A  +      +  RL   NA          +         
Sbjct: 161 DPDR----AVSDLSEDSDDLARTVASVYAEYQRRLRAANALDFDDLIGETVGILQAFPDI 216

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP--------NGAIVLPGLDCHIPTAIW 271
               +     +++     +  A   L+  +              A +    D       +
Sbjct: 217 AGHYRRRFRHVLVDEYQDTNHAQYVLVRELVGRGSEDEPGDVPPAQLCVVGDADQSIYAF 276

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
              T ++      +   +T            L+      + + + +N +  R+       
Sbjct: 277 RGATIRNIEDFERDYPDATTIL---------LEQNYRSTQNILSAANSVISRN------- 320

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKK 388
                     +   E ++         +    ADNE +EA  +A    AL    +     
Sbjct: 321 ----------SGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAERDEITYND 370

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            A+     N +R ++    R GI   +  G+          + + L  +    D +++  
Sbjct: 371 VAVFYRTNNSSRSLEEVFIRAGIPYKVVGGVRFYERKEIRDIIAYLRVLDNPGDAVSMRR 430

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
           ++  P    G   +                                  A +     +   
Sbjct: 431 ILNTPRRGIGDRAEACVAVYAENTGAGFSDALV--------------AAAEGKVPMLNSR 476

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
             +      EL   L   +      L           G        +L  +         
Sbjct: 477 AEKAIAGFVELLDELRGRLDSSEGDLGELVEAVLERTGYRR-----ELESSTDPQELARL 531

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                 +    E  T  +  ++       +    +    +    +  +T       +  +
Sbjct: 532 DNLNELVSVAHEFSTDLANAAEPEPDAEDVPDTGMLAAFLERVSLVADTDDIPEHGAGVV 591

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            ++    ++ L F  + + G  +G++P   A +       +  L      +   +     
Sbjct: 592 TLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDDPTELSEERRLAYVGITR--ARQRLYL 649

Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
             A         RS     +    SR+L+ +                Q  L+W R     
Sbjct: 650 SRA-------IVRSSWGQPMLNPESRFLREIP---------------QELLNWRRLAPKP 687

Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
           +          F    + P   S S+   L+  P          L  +   
Sbjct: 688 SFSAPVSGAGRFGTARSAPVRTSTSKRPLLVLQPGDRVTHDKYGLGRVEEV 738


>gi|41406991|ref|NP_959827.1| hypothetical protein MAP0893 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395342|gb|AAS03210.1| UvrD [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 774

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 73/731 (9%), Positives = 187/731 (25%), Gaps = 90/731 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T +A  E+R   + + G ++  +  + +              L       + 
Sbjct: 66  GQVLAITFTNKAAAEMRERVVRLVGNRARAM-WVSTFHSTCVRILRNQASL-------IE 117

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            +     +       R  L  I +D+  +     P            LA+ I  ++ E  
Sbjct: 118 GLNSNFSIYDADDS-RRLLQMIGRDMGLDIKRYSPRL----------LANAISNLKNELI 166

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                                  +      +  RL   NA          +         
Sbjct: 167 DPAA-AVANLTDGSDELSRT---VASVYGEYQRRLRAANALDFDDLIGETVAVLRAFPQI 222

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTV-----ANHPNGAIVLPGLDCHIPTAIWNTI 274
               +     +++     +  A   L+  +      +      +    D       +   
Sbjct: 223 AQHYRRRFRHVLVDEYQDTNHAQYVLVRELVGTDTEDGVPPGELCVVGDADQSIYAFRGA 282

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
           T ++      +   +T            L+      + + + +N +  R+          
Sbjct: 283 TIRNIEDFERDYPDATTIL---------LEQNYRSTQNILSAANSVIARN---------- 323

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSAL 391
                  +   + ++         +    ADNE +EA  +A    AL    +      A+
Sbjct: 324 -------SGRRDKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAQKGEITYNDVAV 376

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
                N +R  +    R GI   +  G+          + + L  +    D +++  ++ 
Sbjct: 377 FYRTNNSSRSFEEVFIRAGIPYKVVGGVRFYERKEIRDIIAYLRVLDNPGDAVSMRRILN 436

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P    G   +                  +  D +   +     +   +    +  +   
Sbjct: 437 TPRRGIGDRAEACVAVYAEN------TGASFADALVAAAEGKVPMLNSRAEKAIAGFVEL 490

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
           L +    L   L D +   +      +  ++ST                L  +       
Sbjct: 491 LDDLRGRLDDDLGDLVESVLERTGYRRELESSTDPQE------------LARLDNLNELV 538

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-IDGETVKPKIEKSSTLFI 630
                F  +    ++L   +         +     + + R+ +  ++ +   + +  + +
Sbjct: 539 SVAHEFSTDRANAAALDESLDAADDEDVPDTGVLAEFLERVSLVSDSDEIPEDGAGMVTL 598

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L F  + + G  +G++P   + +  +    +  L      +   +       
Sbjct: 599 MTLHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPVELSEERRLAYVGITR--ARQRLYLSR 656

Query: 691 ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
           A         RS     +    SR+L+ +                   +    +      
Sbjct: 657 A-------IVRSSWGQPMLNPESRFLREIPQELIEWRRTAPAPSFSAPVSGAGRFGTPRA 709

Query: 751 QPHYKRPKPFP 761
            P        P
Sbjct: 710 APTRAAMSKRP 720


>gi|270264846|ref|ZP_06193110.1| hypothetical protein SOD_j00610 [Serratia odorifera 4Rx13]
 gi|270041144|gb|EFA14244.1| hypothetical protein SOD_j00610 [Serratia odorifera 4Rx13]
          Length = 1016

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 92/820 (11%), Positives = 207/820 (25%), Gaps = 103/820 (12%)

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
           E +  L   +    W           +Y  E        + +  +   +  +AE   +G 
Sbjct: 46  ESIDGLAEAQQ---WQAPL--WARLVEYTHELGQPEWHRANLYRRFISVLEKAERCPEGL 100

Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW----------NTITE 276
              + I G +   P     +  +  H +  ++      +    I                
Sbjct: 101 PPRVFICGISALPPVYLEALQALGRHIDIHLMFTNPCRYYWGDIQSQSFLAKLQSRKRRH 160

Query: 277 KSTNITSSNTTYSTHPQYSLAK---------LLDFLDIKREDVKRLGN------------ 315
                  +      +                LL        D   L +            
Sbjct: 161 YQDKTEYALFRDPDNAAALFNAEGEQDLPNPLLASWGKLGRDHHFLLSQIESAQEIFAFV 220

Query: 316 ---VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                N ++     + +            T         +      ++L    + + E  
Sbjct: 221 DIPADNLLHAIQHDMLELKNSAVIGTTLETLESSATKRRLDPEDRSISLHACHSPQREVE 280

Query: 373 SIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLST 423
            +   L   L E+     +   ++ AD +        +         +   IS      +
Sbjct: 281 VLHDQLLTMLAEDPALTPRDIIVMVADIDNYTPYIQAVFGNASPERYLPFAISDRKASQS 340

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKN 481
                   SLL+          +  L++ P    +F   E+ L   ++ +    +R   +
Sbjct: 341 HPALQAFISLLDLPQSRFTSEQVLALLEVPALAARFSIQEEGLRLLRHWVGESGVRWGLD 400

Query: 482 SYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP- 533
             ++ +L        +                           + +  LV  +   +   
Sbjct: 401 DDNVRELDLPATGQHTWQFGITRMLLGYAMDSDAGDWQGVLPYDESSGLVAELAGQLAEL 460

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
           L +    +       ++ +W  L    L      +      L   E  +  S +F   + 
Sbjct: 461 LASLSRWRQRLTEARALPEWLPLCRQLLDTFFEPDGETEAALALIE--QQWSKVFEHGLA 518

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                +       D +   +D E +  +      +     +  R + F  + L G+N+GV
Sbjct: 519 ARYPDEVPLTILRDELAARLDQERISQRFLAG-QINFCTLMPMRSIPFKVVCLLGMNDGV 577

Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTI 711
           +P+      F     Q     ++             + +  + L  +   R   +N    
Sbjct: 578 YPRTLPPLGFDLMAQQVKRGDRSRRDDDRYL-FLEAILSAQQRLYISFIGRSIQDNSLRY 636

Query: 712 ASRWLQRLLVLGGT----------DFFDNLKKRGQCYLDW-------------------- 741
            S  +  LL               D   +  K G+  L W                    
Sbjct: 637 PSVLVTELLEYLEQSYCLPGDEALDADASALKVGKHLLSWHARMPFAAENFLPGTEAQSY 696

Query: 742 -TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
               L    K+     P   P L  +    S  ++ +    P   + +  L + FI    
Sbjct: 697 AAEWLPAADKRGAAHPPFNQPLLPDEQTQISLDDLLRFYRHPIRAFFQLRLGVSFILEET 756

Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
           + PD      +  N+    +  ++     +     +    +             I+    
Sbjct: 757 ELPDEEPF--ILDNLSRYQLNSQLLNTLIDGEDAARLFQRARAAGGLPFGPFGEIYWQKQ 814

Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
            +      E     +S           ++ I+  G+H++G
Sbjct: 815 QEEMSELAEQVRAERSEG------HSLELDIDIAGVHISG 848


>gi|317494833|ref|ZP_07953244.1| DNA helicase II [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917158|gb|EFV38506.1| DNA helicase II [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 720

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 155/689 (22%), Gaps = 125/689 (18%)

Query: 50  YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP---VS 104
              T +A  E+R     + G          I +   +      A   L  NL      + 
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGTSQGGMW---IGTFHGLAHRLLRAH-HLDANLPQDFQILD 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +  +L  L R++                    +                           
Sbjct: 116 SDDQLRLLKRIVKALNLDEKQWPPRQGMWYINNKKDD---------------------GL 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
           + + + +  N     W            + + E              +            
Sbjct: 155 RPQHIESYGNPVEQTWLR--------VYQAYQEACDRAGLVDFAELLLRAHELWLNKPQI 206

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +       +  +A +    +++   D       W     ++ 
Sbjct: 207 LNHYRERFTNILVDEFQDTNRIQYAWIQMLAGNTGKVMIV--GDDDQSIYGWRGAQVENI 264

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +                            G  +  +       S      +    
Sbjct: 265 QRFLDDFP--------------------------GAETIRLEQNYRSTSNILKAANALIE 298

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRN 397
            N   L  K+         ++L  A NE +E+  +   ++   D        A++     
Sbjct: 299 NNDGRLGKKLWTEDGDGEKISLYCAFNELDESRFVVNRIKAWQDNGGSLNDCAILYRSNA 358

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L +  +   I  G             + L  I   ND  A   +V  P    
Sbjct: 359 QSRVLEEALLQVAMPYRIYGGQRFFERQEIKDALAYLRLISNRNDDAAYERVVNTPTRGI 418

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G     + R          R         +L    +                  L+ +  
Sbjct: 419 GDRTLDVIRQAAR-----DRQLTLWQATHELIQEKVFAGRASGALQRFIELIDALASDTA 473

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           ++ + +    +   + L      +    G   I +  +L     Q    DE         
Sbjct: 474 DMPLHVQTDRVVRDSGLRQMYEQEKGEKGQTRIENLEELVTATRQYSYEDEDE------- 526

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                                  + +     ++                 + ++    ++
Sbjct: 527 -----------------------DLLPLQAFLSHAALEAGEGQADAYQDAVQLMTLHSAK 563

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + + G+ E           F S++   +      E+ +        M    R L
Sbjct: 564 GLEFPQVFIVGMEE---------GMFPSQMSLDEGGRLEEERRLAYVGVTRAM----RKL 610

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVL 722
             T +         +    SR++  L   
Sbjct: 611 TITYAETRRLYGKEVYHRPSRFIGELPEE 639


>gi|209543463|ref|YP_002275692.1| double-strand break repair helicase AddA [Gluconacetobacter
            diazotrophicus PAl 5]
 gi|209531140|gb|ACI51077.1| double-strand break repair helicase AddA [Gluconacetobacter
            diazotrophicus PAl 5]
          Length = 1185

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 80/803 (9%), Positives = 173/803 (21%), Gaps = 89/803 (11%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS--I 239
                D LK     W    ++            +     +                G+   
Sbjct: 386  ERTLDLLKDPGAAWVLYKLDGGIDH--LLLDEVQDTSPDQWAIAGGLTSEFFAGAGAHDD 443

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNITSSNTTYSTHP 292
             A  R +  V ++        G D                           + +  ST P
Sbjct: 444  GAPPRTLFAVGDYKQSIYSFQGADPAAFRHWRQRFRRQVEDAGRMWKEPALTVSFRSTAP 503

Query: 293  QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
               L   +  L      +   G                      + +       N     
Sbjct: 504  VLRLVDSVFSLPDAARGLVEPGGGVPGHLSARPGQGGRVELWPLTPIDEAGEDANPWAAP 563

Query: 353  QKCFSDVALIEADNEREEAISIAIALR-----MSLDENKKKSALITADRNLARRVKLELT 407
            ++        +   +   A  +A   R      +         L+    N  R +   L 
Sbjct: 564  RENEGQSTAAQRLADSLAAWIVAELRRPPEPGQAPLTPGDVLVLVPRRSNFVRALIRALK 623

Query: 408  RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
               + +       L   +    L +L +A+    D + +A ++  PL             
Sbjct: 624  TQDVPVATLVRTGLVDQVAVQDLMALCDALLLPQDDLTLACVLTSPLGGVSDDGVMDLAV 683

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH--WQSRLSEEDKELAVLLVD 525
                  +         +  D ++      A  +   +       S         A LL  
Sbjct: 684  GRGDRPLWAVLRDRHAERPDWRAAWTMLDALFRRVDYASPYGLLSEALGPLGGRARLLAR 743

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
               +   P+    +           S                   +    W     +T+ 
Sbjct: 744  LGPEAAEPVDELLSAALRYESLHPAS------------------LQGFLHWLRASQETVK 785

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                   +    + A+  + +     ++                +        L +    
Sbjct: 786  REPDAAADMVRVMTAHGAKGLQARLVILPDT-------------VGTAKFDGGLVWARDQ 832

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
              GL+  +W         ++R +Q  +     E+        +         +     ++
Sbjct: 833  PSGLDLPLWVPRAEMGIGVTRALQQTIRAAAIEE---YNRLLYVALTRASDRLVVCGWQQ 889

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
              + T  S ++            +     G        +            P+  P   A
Sbjct: 890  KRMVTDESWYMLCRRGFEQAGAEERPFDLGWEGTRLVLEEAPARLSGAPAAPRSRPEPPA 949

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT------------------- 806
                         I  P +  A+ +  L                                
Sbjct: 950  VALPAWMGRAPDWIATPPSAEAKLLRPLVPSRPDDAPLGPQPAVRSPLAIARARRPAARE 1009

Query: 807  ---DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
                +G L H ++  L  +            + +              +D   +      
Sbjct: 1010 QALRKGQLVHALLQYLPDRPAADRARVARDWLSRTGH----------GLDAAEQARIAAQ 1059

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
              + ++                P      + G  + G  DR+ +   G V + D+KT   
Sbjct: 1060 VLAVMDDPAMAPLFGPGSRAEQPLAGI--AGGAVIVGQVDRMMVRP-GDVLLCDFKTNRQ 1116

Query: 924  PK--KETAQKLIDPQLSLEAAAL 944
            P     +   L   Q++   A L
Sbjct: 1117 PPDDAASVPVLYLRQMASYRALL 1139


>gi|89097085|ref|ZP_01169976.1| PcrA [Bacillus sp. NRRL B-14911]
 gi|89088465|gb|EAR67575.1| PcrA [Bacillus sp. NRRL B-14911]
          Length = 746

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 72/723 (9%), Positives = 189/723 (26%), Gaps = 123/723 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           ++     T +A +E+R     + G  +       I +   +       D+      N   
Sbjct: 58  NILAITFTNKAAREMRERIQNMMGGAADDIW---ISTFHSMCVRILRRDI-DRIGFNRNF 113

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           + +           + +  L +   D     P ++  S ++A              + E 
Sbjct: 114 TILDT----TDQQSVIKAILKEKNLDPKKYDPRAILGSISSA--------------KNEL 155

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              E+        +                 +  RL +  A       +  ++       
Sbjct: 156 IDPEEYAKAAGGYF-------EQIASDVYTEYQRRLRKNQALDFDDLIMTTIQLFQRVPE 208

Query: 224 KGTK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                      I +     +  A   L+  +A+      V+   D       W      +
Sbjct: 209 VLEYYQRKFQYIHVDEYQDTNRAQYMLVKLMADRFKNLCVV--GDSDQSIYRWRGADIAN 266

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +        Y  A+ +                   +        +  L  +   
Sbjct: 267 ILSFEKD--------YQNARTI------------------LLEQNYRSTKRILLAANEVI 300

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALITAD 395
            +N +     +       + +    AD+E+ E   +A  ++  +D       + A++   
Sbjct: 301 AKNLNRKAKNLWTENAEGNKLFHYRADSEQGEGQFVAGKIKEMVDSGKRKYSEIAILYRT 360

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L +  I   I  GI          + + L  I   +D +++  ++  P  
Sbjct: 361 NAQSRVMEEVLLKSNIEYSIVGGIKFYDRKEIKDILAYLRLIANPDDDISLQRVINVPKR 420

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G            +  + +    ++ D++ L   +       ++              
Sbjct: 421 GIGSGSVDKIANFAQMHDMTMYQALDALDLIGLSPKITKAATEFRDL------------- 467

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                             + +Y+  +        + +  + +                 L
Sbjct: 468 ------------------IRSYEQMQEYLSVTELVEEVLEKSGYRDMLKAEKSIEAQSRL 509

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +E  +++  F    E         + ++  +  + D + ++    K+ ++ ++    
Sbjct: 510 ENIDEFLSVTKNFEDGSEDK-----TLVAFLTDLALVADIDKLEDDGTKTDSVVLMTLHS 564

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT- 694
           ++ L F  + L GL EGV+P + +         +  L               +       
Sbjct: 565 AKGLEFPVVFLIGLEEGVFPHSRSLMEEAEMEEERRLA--------------YVGITRAE 610

Query: 695 RHLIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
             L  T +              SR++Q +      +  +  K     +          + 
Sbjct: 611 EELYITNAQMRTLFGRTNMNPPSRFIQEIPADLI-EGIEPKKASPSPFGSPAAGGRQPSS 669

Query: 751 QPH 753
              
Sbjct: 670 SAP 672


>gi|72162215|ref|YP_289872.1| hypothetical protein Tfu_1816 [Thermobifida fusca YX]
 gi|71915947|gb|AAZ55849.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 280

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 79/245 (32%), Gaps = 21/245 (8%)

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
           P     R  S S     +  P     R I ++   P          RGTL H ++ +L +
Sbjct: 5   PSPVPLRALSPSRATDFMQCPLLFRFRVIDRIPEPPSP-----AARRGTLVHAVLEKLFE 59

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLP-------PHIDIIWRHLFHKISHSFLEHEEKI 874
                 TP+    + +       ++                W      +   + + E   
Sbjct: 60  LPAESRTPDAALALLEPQWERMREQEPDVEAMFPDAEALAAWLEEARALVRRYFDLESPQ 119

Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
           +  +E     +  ++ +ES  + L G+ DR+D+  +G V I DYKTG +P     +    
Sbjct: 120 R--LEPQQREVRLEVPLESGPLLL-GYVDRVDVAPTGQVRIVDYKTGKSPAPR-YEDKAR 175

Query: 935 PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            Q+      +          R    L  + L           +++  +A+         +
Sbjct: 176 FQIFFYGVMVWRE-----TGRVPDRLQLLYLGDGAVRWYDPTEEEMRNAEAHIRAVWDTI 230

Query: 995 IEIVT 999
           +E   
Sbjct: 231 VETAR 235


>gi|317046397|ref|YP_004114045.1| DNA helicase II [Pantoea sp. At-9b]
 gi|316948014|gb|ADU67489.1| DNA helicase II [Pantoea sp. At-9b]
          Length = 720

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 71/683 (10%), Positives = 161/683 (23%), Gaps = 115/683 (16%)

Query: 50  YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--VSN 105
              T +A  E+R    ++ G          I +   +      A  L +        + +
Sbjct: 60  VTFTNKAAAEMRHRIDQLIGTSQGGMW---IGTFHGLAHRLLRAHHLDAGLPQDFQILDS 116

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  L RLI                                           + E  +
Sbjct: 117 EDQLRLLKRLIKAMNLDEKQWPARQGMWYINGK---------------------KDEGLR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + + +  N     W            + + E              +             
Sbjct: 156 PKHIESYGNPVEQTWLR--------IYQAYQEACDRAGLVDFAELLLRAHELWLNKPHIL 207

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     +       +  +A      I++   D       W     ++  
Sbjct: 208 NHYRERFSNVLVDEFQDTNNIQYAWIRMLAGDTGRVIIV--GDDDQSIYGWRGAQVENIQ 265

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G  +  +       +      +     
Sbjct: 266 RFLQDFP--------------------------GAETIRLEQNYRSTNNILKAANALIAN 299

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398
           N   L  ++         ++L  A NE +EA  +   ++   +        A++      
Sbjct: 300 NNGRLGKELWTDGSDGEPISLYCAFNELDEARFVVNRIKAWHENGNALADCAILYRSNAQ 359

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L +  +   I  G+            + L  +   ND  A   +V  P+   G
Sbjct: 360 SRVLEEALLQGSMPYRIYGGMRFFERQEIKDALAYLRLMANRNDDAAFERVVNTPVRGVG 419

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                + R                               T +         +R   +++ 
Sbjct: 420 DRTLDVVR------------------------------QTAREQQLTLWQATRELLQNRV 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           LA      + +    + +  +       ++      K +   L        +    +   
Sbjct: 450 LAGRAASALQRFCELVDSLASETAELPLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENL 509

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           EE  T +  FS   E    +   A      +                  + ++    ++ 
Sbjct: 510 EELVTATRQFSYQDEDEDLMPLQAFLSHAALEAGEGQADKWQ-----DAVQLMTLHSAKG 564

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F  + + G+ E           F S++   +      E+ +        M   T    
Sbjct: 565 LEFSQVFIVGMEE---------GMFPSQMSLDEGGRLEEERRLAYVGVTRAMEKLTLTYA 615

Query: 699 YTRSLRENNIPTIASRWLQRLLV 721
            TR L    +    SR++  L  
Sbjct: 616 ETRRLYGKEVYHRPSRFIGELPE 638


>gi|89897835|ref|YP_514945.1| DNA/RNA helicase [Chlamydophila felis Fe/C-56]
 gi|89331207|dbj|BAE80800.1| DNA/RNA helicase [Chlamydophila felis Fe/C-56]
          Length = 636

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 81/687 (11%), Positives = 179/687 (26%), Gaps = 119/687 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTI-LPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            +     T +A +EL+   +    + S   +P++ +   +                    
Sbjct: 51  EILAVTFTNKAAKELKERILHQCPQVSGADIPMVCTFHSLG------------------- 91

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETE 162
               +  L R I     +   II D      L         +   L+ ++   I   +  
Sbjct: 92  ----VFILRRSIQALNRENNFIIYDQSDTDKLLKQCLQKFNLKKTLSSSIQYHISQAKNR 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               EDL     E+Y    +          K + +RL E NA          ++   +  
Sbjct: 148 LLYPEDL---DPEEYVDPVVS-------IYKEYQQRLKETNALDFDDLLFLTVKLFKDFP 197

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                       ++I     +  A   +  T+A       +    D       W      
Sbjct: 198 EVKKEYSELWKALLIDEYQDTNHAQYMMAQTIAGKHQN--IFAVGDPDQSIYSWRGANIH 255

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +PQ  + +L                                   +  
Sbjct: 256 NILNFE-----QDYPQARVLRL---------------------EENYRSYGNILNAANAL 289

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITA 394
              N   L+  + +++     + +     +++EA  +A     L    +   +   +   
Sbjct: 290 IQNNASRLKKNLRSVKGPGEKIRVFLGKTDKDEAEFVASEIYRLHKRSNIPLRDFCIFYR 349

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R  +  L R  I  +I  G+          + + L       D +A    V  P 
Sbjct: 350 TNFQSRTFEDALLRRRIPYEILGGLSFYKRKEIQDILAFLRMFTAKCDVVAFDRTVNLP- 408

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                        K  L   A+    +     +L  L   R A +   TH      +  E
Sbjct: 409 -------------KRGLGPSAISSLIDYALTNNLPILEACRNALE---THSVKLSKKQQE 452

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                  +                  +      L ++++   T+     + + +      
Sbjct: 453 GLWSYLSIF----------------QQLERAYTLPLNEFVIATIRITGYLQVLKEDPDTF 496

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
              +     L+S   +  +  +            +  L    +       +  + ++   
Sbjct: 497 EDRKSNLDELASKTFEWEQQNTEGTLE-----SFLDDLALKSSTDETELIADRVNLMTIH 551

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
             + L F    + GL E ++P   +K  + +   +  L      +     A D       
Sbjct: 552 NGKGLEFRIAFVVGLEENLFPHANSKGNYENLEEERRLCYVGITR-----AQDLLYLTAA 606

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLV 721
           +      ++R        SR+L+ +  
Sbjct: 607 QTRFLWGTVRVMK----PSRFLKEIPR 629


>gi|218902338|ref|YP_002450172.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH820]
 gi|251764500|sp|B7JDU4|ADDA_BACC0 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|218537459|gb|ACK89857.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH820]
          Length = 1240

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 95/899 (10%), Positives = 215/899 (23%), Gaps = 143/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++              ++  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMG-EEVGEIDYDADAELK 516

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
            L     +  +       I   ++        E +  + EA  +A  ++  +D        
Sbjct: 517  LGASYPEGEDVAAELLCIQQTEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 576

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 577  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 636

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 637  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 686

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 687  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 746

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 747  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 806

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 807  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 866

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 867  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 926

Query: 690  M--ANGTRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKL 745
                   R       L + +IP     +     V    G         + +         
Sbjct: 927  APSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 986

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARR 789
            +        +R +           Y          S +EIK+        ++ +    R 
Sbjct: 987  EKKAVPLESERKEEVYDRLMWKYRYGEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1046

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1047 PIRTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL- 1100

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1101 -TFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1159

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1160 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKS 1217


>gi|41407941|ref|NP_960777.1| hypothetical protein MAP1843 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396295|gb|AAS04160.1| hypothetical protein MAP_1843 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 301

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 73/253 (28%), Gaps = 17/253 (6%)

Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
           QP  ++    P  +      S S        P     R I +L              RG+
Sbjct: 4   QPEARQSAARPAGQVSRPALSPSRAADFKQCPLLYRFRAIDRLPE-----APSPAQLRGS 58

Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII----WRHLFHKISHS 866
           L H  + +L +    +  PE    +                 D+      + L    +  
Sbjct: 59  LVHAALQQLYELPAAQRGPETALALVDPAWEQLLAATPELTADLDPTQHGQLLAEAQALL 118

Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
              +  +  +  +        ++ +    + L GF DRID+  +G + + DYKTG  P  
Sbjct: 119 AGYYRLEDPTRFDPQCCEERVEVELADGTL-LRGFIDRIDVAATGELRVVDYKTGKAPPA 177

Query: 927 ETAQKLID--PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
             A        Q+   A AL               L  I L     +D      +    +
Sbjct: 178 ARALAEFKAMFQMKFYAVALLRS-----RGVPPTRLRLIYLADGQVLDYSPEYDELLRFE 232

Query: 985 ELSEKSLKNLIEI 997
           +      + +   
Sbjct: 233 KTLMAIWRAIQTA 245


>gi|309801365|ref|ZP_07695494.1| putative ATP-dependent DNA helicase PcrA [Bifidobacterium dentium
           JCVIHMP022]
 gi|308222254|gb|EFO78537.1| putative ATP-dependent DNA helicase PcrA [Bifidobacterium dentium
           JCVIHMP022]
          Length = 794

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 75/689 (10%), Positives = 170/689 (24%), Gaps = 73/689 (10%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A  E+R     + G ++  +  I +           D      L    S
Sbjct: 63  SQILAITFTNKAAAEMRERLAALVGPEAERM-WISTFHSACVRILRRDG-DQIGLKSGFS 120

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            I    +  RLI +    L   +K   P   L              +L    D ++T   
Sbjct: 121 -IYDTADSERLIKLIGADLNIDLKRYTPRMILGKISDYK------NSLISWKDQLKTYAA 173

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-----EA 219
            +      +       +    +   +    +  RL + NA       +  +       +A
Sbjct: 174 DY---RPGQRGYQLGRFDNVEELFAVVYSEYQYRLAQANAVDFDDLIMRTVELFRTCPQA 230

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I +     +  A   L+  ++          G+D         T   +  
Sbjct: 231 SDYYRHKFRYIFVDEYQDTNHAQYVLVRELS----------GIDSGEQADPHATGAGRVG 280

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
               +    S    Y+            E+                  +           
Sbjct: 281 PSWVTVVGDSDQSIYAFRGADIRNIQDFEEDFPNAKTIMLEQNYRSTQTILDAANAVIAK 340

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396
                 +     + K    +    ADN ++EA  IA  +     E        A++    
Sbjct: 341 NENRKPKKLWTALGKGDP-IIGYAADNAQQEAGYIASEITRLHTEEGIAYSDMAIMYRAN 399

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  +    +   +  G             + L AI    D + +  ++  P   
Sbjct: 400 AQSRSLEETMINANLPYQLVGGTKFYERREVKDAIAYLQAIVNPADDVNMRRILNVP--- 456

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                   +RA+  + + A R     +D ++    +                      + 
Sbjct: 457 ---KRGLGARAEGLVAMYADRHGTTFFDGIEHLDQIEGMTGRTAKPLGAFRDLMHELVDF 513

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            +                             LS S   +                L  L 
Sbjct: 514 AK----------------AHDAKPSEVVAEVLSRSGLLEELQRSEDPQDASRVDNLSQLQ 557

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                   ++             A    +++    + D + +  + E S  + ++    +
Sbjct: 558 SVAAEFEQNTP-----------DATLAGFLETTALVADSDQLPGENEDSGKVTMMTLHTA 606

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L +  + L G+ +G +P + A         +  L      +   +             
Sbjct: 607 KGLEYPVVFLTGMEQGTFPHSRAMEDTSELSEERRLAYVGITRAKRRLYVTRAA------ 660

Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGT 725
               R+        + S++L  +      
Sbjct: 661 ---VRAQWGQANEMMPSQFLDEIPEDLID 686


>gi|229120765|ref|ZP_04250008.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 95/8201]
 gi|228662770|gb|EEL18367.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 95/8201]
          Length = 1165

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 95/899 (10%), Positives = 215/899 (23%), Gaps = 143/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++              ++  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMG-EEVGEIDYDADAELK 441

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
            L     +  +       I   ++        E +  + EA  +A  ++  +D        
Sbjct: 442  LGASYPEGEDVAAELLCIQQTEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 501

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 502  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 561

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 562  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 611

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 612  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 671

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 672  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 731

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 732  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 791

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 792  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 851

Query: 690  M--ANGTRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKL 745
                   R       L + +IP     +     V    G         + +         
Sbjct: 852  APSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 911

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARR 789
            +        +R +           Y          S +EIK+        ++ +    R 
Sbjct: 912  EKKAVPLESERKEEVYDRLMWKYRYGEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 971

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 972  PIRTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL- 1025

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1026 -TFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1084

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1085 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKS 1142


>gi|189423552|ref|YP_001950729.1| UvrD/REP helicase [Geobacter lovleyi SZ]
 gi|189419811|gb|ACD94209.1| UvrD/REP helicase [Geobacter lovleyi SZ]
          Length = 736

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 80/713 (11%), Positives = 186/713 (26%), Gaps = 125/713 (17%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           ++   +V   R   + P    ++     T +A +E+      + G   T  P+I +    
Sbjct: 35  VITHRIVHLIREHGIRPW---NILAVTFTNKAAKEMAERVRHLLGSHDT--PLIATFHAT 89

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                  D+                    +L       + D          L   ++  +
Sbjct: 90  CGRILRQDIH-------------------QLGYESSFAIYDDKDSERLLKDLIKELNLDD 130

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
             + A  +   ID  +      E+L A         W     F++I    + ERL   NA
Sbjct: 131 KRYPANGIGARIDDCKNRGLLPEELPAGD------LWN--QQFIRI-YAAYQERLKRCNA 181

Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  +  +R   +        +     +++     + P   RL+  +A       V+
Sbjct: 182 LDFGDMILQTVRLFEQFPEVLSRWQHRFQWLLVDEYQDTNPVQYRLIRLLAGERQNLCVV 241

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       W     ++      +      PQ ++ +L          ++  G V   
Sbjct: 242 --GDDDQSIYSWRGADIRNILEFEKDF-----PQVTVIRLEQNYRSTPTILQAAGAVVAR 294

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA--IA 377
            +GR      +  P                               +++R EA  ++  IA
Sbjct: 295 NFGRKAKTLWTDNPDGEPIRCERL---------------------ESDRAEARFVSSEIA 333

Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
           L         + A        +R ++  L   GI   I  G+     L      + L  +
Sbjct: 334 LLQRNGLLLSEMAAFYRTNAQSRLLEEALAAEGIPYHIVGGVRFYARLEIKDTLAYLRLL 393

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
              +D +++  ++  P    G                               + V     
Sbjct: 394 ENPSDDVSLKRVINVPPRGIG------------------------------AATVERVAE 423

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
             +            + +   L       +   +  L  ++    +      +    + +
Sbjct: 424 LARQGQITLFEAFERAVDSNLLGSGPRSKVAAFVELLQRFRRLAATQLMPELVRAVLEES 483

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               +     +      L    +  +    FS                 D + ++     
Sbjct: 484 GYLARLKESRDEEDSERLENLAQLVSAVEEFSTANPEAG--------LADFLEQVALVSD 535

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
           ++       ++ ++    ++ L +  + + G+ E ++P   +              L   
Sbjct: 536 LERGEAGRPSVTLMTLHAAKGLEYKAVFMVGMEERLFPHVRS--------------LDDP 581

Query: 678 EKYIGQAAHDFEMANGTRH-LIYTRSLRE----NNIPTIASRWLQRLLVLGGT 725
           +    +    +      R  L    + R          + SR+L+ +      
Sbjct: 582 DGMEEERRLCYVGMTRARERLYLLYARRRMIFGQEQANLPSRFLKEIPAELME 634


>gi|1388172|gb|AAB02825.1| ORFA; putative Rep helicase-like protein [Dichelobacter nodosus]
          Length = 685

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 86/719 (11%), Positives = 183/719 (25%), Gaps = 122/719 (16%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
              +V     T +A +E+ +       K++  L  I +   +                  
Sbjct: 69  DAPNVCAVTFTNKAAREMLARSRARLKKRAHGL-TIATFHRLG----------------- 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                 L+ L R       +    I D +    L   +   +     + +   I   +  
Sbjct: 111 ------LMMLERDFAKANRRRGFSIFDQHDSLTLLRELCHNDDDAFLRRMQQHISAFKNA 164

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RA 217
               E+  +L  +         A         + ERL   NA       +         A
Sbjct: 165 NVLPEETASLMIDD------ETAAQAAKIYCAYCERLQAYNAVDFDDLLLLPTRLLKTDA 218

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     + +     +      LM  +     G  +    D             K
Sbjct: 219 AVRGFWQEKIRYLFVDEYQDTNNCQYALMQLIVGA--GGALTAVGDDDQSIYALRGAQVK 276

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +PQ  + KL                             K     +T 
Sbjct: 277 NLQYL-----QEDYPQLHIIKL---------------------EQNYRCHHKILQAANTL 310

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSALITA 394
              N  ++E ++ +  +    V +  A N+  EA  IA A+           +  A++  
Sbjct: 311 IAHNPHLVEKRLWSQLERGDGVCVFAARNDEAEAERIASAIYQQKLRTQAAWQNFAVLYR 370

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               AR ++  L    I   IS G           L + L  I    D  A   +   P 
Sbjct: 371 SNFQARAIEQALRDVSIPYQISGGTSFYEHSEIRDLLAYLRLINNPEDDAAFLRICNVPK 430

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
            + G     +               +          L L  + + +    V  +   + E
Sbjct: 431 REIGTKTLTVL--------GEYAAKRQCCLFYAATELGLATLLSARAAMSVQQFCQWIEE 482

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           + KE    L   +LQ +   V Y+    +                 +  +   E  +   
Sbjct: 483 KQKEAETALPSALLQTVIDEVAYREYIEANEAPAKAEKRWARVEELIAWLVRLEEEE--- 539

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                                            ++  ++  + ++ + ++   + ++   
Sbjct: 540 --------------------------RYQSLAGLMRHVLLLDILEHQDKQKDGVQLMTLH 573

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + + G+ E               ++      ++ E    +    +      
Sbjct: 574 AAKGLEFPYVYIAGVEE--------------DLLPHHHCGESEEAIAEERRLLYVGMTRA 619

Query: 695 R-HLIYTRSLRENNIPTI----ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
           +  L  + + +  +        ASR+LQ L   G            Q   +   ++  T
Sbjct: 620 KFQLTLSYAKQRRHGKNWEASTASRFLQELPEEGIDWQDGRRAIDEQALNEKREEMFST 678


>gi|261367235|ref|ZP_05980118.1| ATP-dependent deoxyribonuclease subunit A [Subdoligranulum variabile
            DSM 15176]
 gi|282570836|gb|EFB76371.1| ATP-dependent deoxyribonuclease subunit A [Subdoligranulum variabile
            DSM 15176]
          Length = 1160

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 100/944 (10%), Positives = 218/944 (23%), Gaps = 80/944 (8%)

Query: 60   LRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIW 119
            LR       G ++ +    ++             +L  +++  V  + + L+        
Sbjct: 217  LRIALDRARGAQALLEAGARTAARDEAADAAYTAVLQDDVSR-VEWLCQKLQQGDWDAAV 275

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD-IIDIIETEEKKWEDLHALKNEKYG 178
                                 S   A   A  L D     I      +    A + ++  
Sbjct: 276  AALEELGGSWRKAGRIKGGKDSNPVAFA-ASELRDRAKKQIAALRTDFLLCTAEEYQEDR 334

Query: 179  MWWLLAADFLKIASKYWTERLV----ELNASSPVGYQIALMRAEAE---------HLMKG 225
                     L   ++ + +       E        ++   +              H +  
Sbjct: 335  RRAAPLVAALVRITQRFADACFAAKCEEKLLDYADFEHLTLDLLIAPDGSRTPLCHTVSE 394

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
                +++     +      +   +A+ P    +    D       +              
Sbjct: 395  RYSAVLVDEYQDTNALQDAIYFALAS-PEADNLFFVGDIKQSIYRFRQADPAVFLGKQQC 453

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                  P    A L   LD       ++    N ++          +             
Sbjct: 454  WQPYPQPAPQPATL--ALDANFRSAPQVIEGINYLFSVFFSEGLGGVTYGDGQRLVVGKP 511

Query: 346  ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---------KKKSALITADR 396
            +   P + +         A +    A  IA  ++                    ++   R
Sbjct: 512  DVSYPGLCEVDVLDGADAAGDAAGIAQRIAGMMQEGFAVRDKTGTRPCRYDDFCILLRGR 571

Query: 397  NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
                  +  L    I +       L    H     +LL  I      + +A ++  P+  
Sbjct: 572  ADFSIYEEALRAAEIPVFADTAADLLDAPHIRPFAALLRVIDNPAQDIPLAAVLLSPMFP 631

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            +   +    R   A    +L G           +        ++    +P    RL EE 
Sbjct: 632  YTPDDLVSLR--RACPQGSLYGAVLYGGQPRFAAFTESLAEYRRLARTLP--VDRLLEEL 687

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                  L                    T    +        V  + +   +         
Sbjct: 688  LARTGYLAAVGALPDGARCREDLLTFVTWAGGAGRAGLSALVRAMDSAAANGGLNQSGGG 747

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLE 635
                G     +    +     ++   +   +   +    + ++P +  S   + ++    
Sbjct: 748  QTRPG----CVSIMTVHRSKGLEFPVVFVANTAHQFNQSDAIRPVLTHSRLGVGVMLRAG 803

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
                 + TL    L + +  +       LS  M+      T  +         +  +   
Sbjct: 804  KSAKRYKTLPYAALAQAIRTET------LSEEMRVLYVALTRAQDALIVTIPLKKTDSAL 857

Query: 696  HLIYTRSLRENNIPTIA---SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
                  +  E   P      S W   LL         +        L             
Sbjct: 858  KTPALCAAAEATGPEAMQGMSSWAGWLLTAVLLHPESDALWAHTPLLPHHLPTKVPLTVR 917

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY---------------------ARRIL 791
                P+  P             +++ + + +A +                     AR + 
Sbjct: 918  LLPAPEAMPEQPPCLEVQPDVSLRRALEETFAWHNPREKLQKIPAKVSVSAVTHGARPVA 977

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE------INHLMKQIIDSHFEK 845
                    K      +RGT  H  +  +       +            L+   +    + 
Sbjct: 978  LERPAFLQKSGMTGAERGTAIHAFLQSVPFDGPAPDLQAEVQRQKDLRLLDADLAEKLDL 1037

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
            E + P  +               E          ++              + + G AD +
Sbjct: 1038 ERVRPFFESGVWRRIRAARRVLREEPFITALPASQVAPEAGQS----DAEVLVQGIADLV 1093

Query: 906  DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE--AAALKAG 947
             +      +I DYKT  + + E  +K    QL L   A AL+ G
Sbjct: 1094 LVFDD-HAEICDYKTDASREPEFYKKEYAAQLQLYRHAFALRLG 1136


>gi|260776644|ref|ZP_05885539.1| exodeoxyribonuclease V gamma chain [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607867|gb|EEX34132.1| exodeoxyribonuclease V gamma chain [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1153

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 129/993 (12%), Positives = 265/993 (26%), Gaps = 140/993 (14%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            +L   LVE  R +PL         I V +    Q L+ E  +  G  + I      L  
Sbjct: 11  DVLKSLLVELVRLNPLE-NPFEQEQILVQSPGMSQWLKMELAKEFGVAANIE---FPLPA 66

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                    +L      P  S   +     +L+ I  + L  +  +      L      +
Sbjct: 67  TFIWNMFTQVLPDV---PQRSAFNKEAMTWKLMFILPSLLEQVEFEALKR-YLVDDDDQS 122

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               LA+ +ADI D         E + + +  +          +  I  +   +  +EL 
Sbjct: 123 KLYQLAEKIADIFDGYLVYR--PEWIASWEAGQVVAELEEEHSWQPILWQALYDHTIELG 180

Query: 204 ASSPVGYQIALMRAEAEHLMK------GTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
            S    ++  L     + L             + + G T   P     +  +  H +  +
Sbjct: 181 QS--PYHRANLYEHFIDTLENYSGKFDHLPKRLFVFGITSLPPRYMDALKAIGEHIDVHL 238

Query: 258 VLPGLDCHIPTAIWN-------------------------TITEKSTNITSSNTTYSTHP 292
           +      +    + +                           T++       N     H 
Sbjct: 239 MFTNPCRYYWGEVRDRKYLARLAARHRQHLVWKQDHSELEGETQQLKGDIEQNLDDELHT 298

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMY-------GRSMVISKSFLPPDTSDMRNTDIL 345
                 LL  +     D   L +              R  ++          +    D  
Sbjct: 299 NVVGNSLLASMGKLGRDNMYLLSQLESHEIEAFVDIERDSLLHHLQADILNLEEHQDDNT 358

Query: 346 ENKIPN---IQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
            +   +   I +    V+L    +   E   +   L    D +     +   ++ AD N 
Sbjct: 359 LDDSHHKQVIDEWDRSVSLHACHSPMREVEVLHDQLLAMFDADPSLKPRDIIVMVADINA 418

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +         I   IS       +        ++N          +  L++ P
Sbjct: 419 YSPAIQAVFGNAPGERFIPYSISDRTADQESPILHAFMQVVNLPNTRCLASELLELLETP 478

Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496
             LA+FG  E    +AK  +E   +R   N +   +                + L+   +
Sbjct: 479 AILARFGLNEDEFIQAKQWVEESGIRWGLNHHTGEEFDLPETSQNTWQFGIQRMLLGYAM 538

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                             + + +   L   +   I  +  Y++    T    SI  W + 
Sbjct: 539 PESAGLLETESGLLSPYNQVQGMGAELAGKLAHFIETVSHYRSQLAQT---QSIEHWRET 595

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
               L +    +      L  +    TL+SL  ++ E               +   + G 
Sbjct: 596 LTVALDDFFSVDLEGEAAL--KSIRDTLTSLKDQLQEAAYEQDLTPNIVSQYLHNKLSGT 653

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            V  +      +     +  R + F T+ L G+N+G++P+      F     ++    ++
Sbjct: 654 RVSQRFLAG-QVNFCTLMPMRSIPFRTVCLLGMNDGIYPRTVPPEGFDLMNGRAKPGDRS 712

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV------LGGTDFF 728
                        + +    L  +   R   +N   + S  +  L+           D  
Sbjct: 713 RRDDDRYL-FLEALLSAQHTLYISYVGRSIQDNTERVPSVLVSELMEYCQQNYCLAGDEA 771

Query: 729 DNLKKRGQCYLD------------WTRKLDYTTKQPHYKRPKPFPP-------------- 762
             + + GQ  L+             +  +++         P                   
Sbjct: 772 LAVDESGQRLLNCISASHSMVPFSPSAFVEHNASYAKEWLPAANRQGQVGGQFNRQLSDY 831

Query: 763 --LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIIT 817
                 P      E+++    P   +  R LK+     +P  + D      G   + +  
Sbjct: 832 LLDAVYPLELDLVELQRFWRLPVQYFFNRRLKVVFEPPLPVMEDDEPFVLNGLESYQMRD 891

Query: 818 ---ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID---IIWRHL--FHKISHSFLE 869
              EL+ +       +   ++   I     +  LP           +     ++    L 
Sbjct: 892 SLLELLLEHQLSGAGDQQAIINDFIAHQRAQGKLPVGAFGDIEFETNRVQAEELVEK-LT 950

Query: 870 HEEKIQSSIEKIFVNIPAKMAI--ESIGIHLTG 900
                 S      + +     +  E   + LTG
Sbjct: 951 WLCGSPSD----DLEVKLTFDVLGEGKPVQLTG 979


>gi|325962273|ref|YP_004240179.1| ATP-dependent DNA helicase PcrA [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468360|gb|ADX72045.1| ATP-dependent DNA helicase PcrA [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 830

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 76/705 (10%), Positives = 182/705 (25%), Gaps = 95/705 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R     + G ++ I+  I +           +   +  L    S
Sbjct: 108 GEILAITFTNKAAAEMRERIEALVGGRAKIM-WISTFHSSCVRILRQE-AANVGLKSNFS 165

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                  L RL+      L    K   P                 K +   I  ++ E  
Sbjct: 166 IYDSADSL-RLVTQVSKGLDLDPKKFAP-----------------KAIQHKISALKNELI 207

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTE--RLVELNASSPVGYQIALMRAEAEHL 222
             +   +  N     +    AD  K  ++   +   +   +  +   Y      A AE  
Sbjct: 208 DVDSYASAANYND-PFEQAVADVYKGYTQRLRQANAMDFDDLIAETVYMFRAFPALAESY 266

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKSTNI 281
            +     +++     +  A   L+  +     GA  +    D       +     ++   
Sbjct: 267 RR-RFRHVLVDEYQDTNHAQYALVREIVGQGPGASELTVVGDSDQSIYAFRGADIRNIVE 325

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                    +P+    KL       +  +    +V +    R                  
Sbjct: 326 FEK-----DYPEARTIKLEQNYRSTQNILSAANSVISRNPNR------------------ 362

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITADRNL 398
               E ++   +     +     +NE +EA  IA     L+   +      A+       
Sbjct: 363 ---PEKRLWTAEGEGHKIIGYVGENEHDEAQFIAKEIDRLQDEDNLRPGDVAIFYRTNAQ 419

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-LAKF 457
           +R ++  L R G+   +  G             + L  +   +D + +  ++  P     
Sbjct: 420 SRSIEDVLVRVGLPYKVVGGTRFYERKEIKDALAYLRVLVNPDDDVNLRRVLNEPKRGIG 479

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
              E  ++          +   + +     + +  ++ +             +  S    
Sbjct: 480 DRAEGAVAALAQRERTSFMAAARRADQAPGMATRSVNAVLGFVKLLDDLAEVAAGSGAAA 539

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            L  +L            T   +++       +    +                      
Sbjct: 540 ALEAVLEQTGYLATLRSSTDPQDESRVENLAELVAVVR------------------EYEQ 581

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           E    TL +   ++       +       DI   + + +       +   + ++    ++
Sbjct: 582 ENPEGTLEAFLEQVSLVADADQIPDAPGADIDEAVAEAK-------RLGVVTLMTLHTAK 634

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-H 696
            L F  + L G+  G++P   +                  ++   +    +      R  
Sbjct: 635 GLEFPVVFLTGMEHGLFPHQRS--------------ATDPKELAEERRLAYVGLTRARKR 680

Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
           L  TRS   +           + L     +  +  ++       W
Sbjct: 681 LYVTRSEVRSMWGQSQYNPASQFLEEIPAELLEWKREGTSRQAGW 725


>gi|198283952|ref|YP_002220273.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665213|ref|YP_002426586.1| ATP-dependent DNA helicase Rep [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248473|gb|ACH84066.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517426|gb|ACK78012.1| ATP-dependent DNA helicase Rep [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 662

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 86/706 (12%), Positives = 171/706 (24%), Gaps = 113/706 (16%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A +E++S   E     S+   ++ +   +  +    D+                
Sbjct: 57  VTFTNKAAREMKSRVGEALQGHSSRGLMVSTFHHLGLQILRKDIER-------------- 102

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
                  L +R     I          +L         LA+ +   I   + +    E+ 
Sbjct: 103 -------LGYRGNFSVIDPGDSLGMVRNLLREANGPSDLAEAIQSRISRFKNDGIFPEEA 155

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY-----QIALMRAEAEHLMK 224
            A                       +   L   NA           ++    AEA +  +
Sbjct: 156 RADD---------RLGQEAAHIYTTYQRSLSACNAVDLDDLILLPIRLLQDDAEARYAWQ 206

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                +++     S  A  RL+ ++        +    D       W      + +  + 
Sbjct: 207 DRIRYLLVDEYQDSNGAQYRLIKSLLGTR--HNLTAVGDDDQSIYSWRGAAADNLDRLAQ 264

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
           +              +  L+       R+   +N +  ++    +  L     D      
Sbjct: 265 DFP---------NLKVVKLEQNYRSTGRILQAANTVIAQNPHFFEKRLWSTLGDGH---- 311

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIAL---RMSLDENKKKSALITADRNLARR 401
                         +  +   NE +EA  +  A+   R       +  A++    + AR 
Sbjct: 312 -------------SIRALRCANETDEAEQVVNAILRDRFQRQGEYRDYAILYRSNHQARP 358

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            +  L    I   IS GI            S L  +   +D  A    V  P    G   
Sbjct: 359 FETALRNARIPYQISGGISFFERSEIKDFLSYLRLLVNPDDDPAFLRAVNTPRRSIGSST 418

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                                              A  K               D     
Sbjct: 419 LERL------------------------------GAFAKERNLSLFAALWDDALDVPDKA 448

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            +    L      V  KT++      +         +  LQ +  +   K     +E   
Sbjct: 449 RIA---LHGFAGWVNLKTDEIGKTELIPALQSLPEEIGYLQYLQNEGDEKDAARRWENIQ 505

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
           + L+ +     +         I    ++  +++    + + +    L +     ++ L F
Sbjct: 506 ELLNWMQRLQEQDEGPQTLAEILNRLMLFHVLE----REEDDDRDVLRLSTLHAAKGLEF 561

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
             + L G  E            L       L     E+ +            T  L   R
Sbjct: 562 PQVFLVGAEEE----------LLPHRNSETLEQIQEERRLFYVGMTRARFRLTLSLCRKR 611

Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                ++    SR+LQ +         D   +           L  
Sbjct: 612 RRYGQDVHPEPSRFLQEIPKEHLDWQGDQNPEEEMDPTAAFAHLRA 657


>gi|158341554|ref|YP_001522718.1| hypothetical protein AM1_H0054 [Acaryochloris marina MBIC11017]
 gi|158311795|gb|ABW33404.1| hypothetical protein AM1_H0054 [Acaryochloris marina MBIC11017]
          Length = 262

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 69/235 (29%), Gaps = 26/235 (11%)

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
              + S +++K     P +   R   KL     F      T  G   H  +  + K    
Sbjct: 1   MSYSLSATKLKTYGQCPKSYQFRYEHKLPSPTIF----GSTKLGNALHAALANVYKDWNY 56

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
                       +   H   E  P  I   W          ++    +I+   + + +  
Sbjct: 57  AYPLPSLDWF-AVCWQHHTSELTPTQIHEGWAA-LQLYYERYIAPLPQIR---KPLGIET 111

Query: 886 PAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETAQKLIDPQLSLE 940
             +  ++       L+G  DR+D +  G +++ DYKT      P           QL   
Sbjct: 112 KVRATLQVRNIEFTLSGRYDRLDYIDDG-LELIDYKTSKSVNPPPSVDI------QLGFY 164

Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              L+      I  + +  L  I L+   K+           A  L E     L 
Sbjct: 165 YLILEQ-----IYKKALKRLSLIYLRSNEKLIYEVTPDHHQQAQSLIEDMAMKLR 214


>gi|187735472|ref|YP_001877584.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
 gi|187425524|gb|ACD04803.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
          Length = 668

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/690 (8%), Positives = 160/690 (23%), Gaps = 118/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--V 103
           S+     T +A  E+R    ++  +K+    ++ +   +       D+            
Sbjct: 55  SILAVTFTNKAALEMRERVGQMVERKAARQIMVSTFHSLCVRILREDIGRLGYKTNFTIY 114

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           S  ++   + RLI+        I                       K++   +  ++   
Sbjct: 115 SGSEQSGLIRRLIVRHGGITEKITP---------------------KDVLSSMSRMKNSG 153

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              + +           +               +    ++    +     L++   +   
Sbjct: 154 LGLDSIEDNLTANIAASYQREL-----------QAQNSVDFDDLLILADKLLKEHRDVRE 202

Query: 224 K--GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                   I +     +      L+  +    +   V+   D       W      +   
Sbjct: 203 AWQQRFRYITVDEFQDTNSLQMSLLGHLVGPEHNVCVV--GDDDQSIYGWRGAQISNILE 260

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                   +         +  L+        + + +N +   ++      L         
Sbjct: 261 FERFFPNPS---------VIKLEENYRCTAPILDTANALIRHNLGRRDKTLRAHK----- 306

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNL 398
                            V LI    + EEA  I   +     +  +     A++      
Sbjct: 307 ------------GGGEAVRLISMPGDAEEAEFIITDIENVRRQEGRPWEDFAILFRANTQ 354

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L    I   +              L S L  I        +  ++  P     
Sbjct: 355 SRIIEQTLREHKIPYRMVGAQSFFDRKEVKDLISYLATIENPQADEYLLRILNTP----- 409

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        +  L    +           W +   EE   
Sbjct: 410 --------------------------PRGISELTSHLVIDWSREHGNSVWAALQDEEFLA 443

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                  + +Q    L+    +           D  +  +                   +
Sbjct: 444 ALSTRARNSVQAFNELIAKYIDLFQDKET-DFGDILEQLIEETGFSEYVTRLCKTEAEIQ 502

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-IDGETVKPKIEKSSTLFILGTLESR 637
           +   ++  + + +               D + ++ +D E     +E    + ++    ++
Sbjct: 503 KRLVSIGDVKASLRN----FWQPGKTLRDYLAQVTLDKEDNDDDVENKPGVCLITMHAAK 558

Query: 638 LLNFDTLILGGLNEG--VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
            L F  + L GL EG     ++              + +  A++ +              
Sbjct: 559 GLEFPVVYLVGLEEGILPHKRSLEDGNCDEERRLLYVGITRAQEKLMLTY---------- 608

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
               TR    + +P   S +L  +      
Sbjct: 609 --CATRLRYGDRMPCQRSSFLSEIPPHLME 636


>gi|329116495|ref|ZP_08245212.1| ATP-dependent DNA helicase PcrA [Streptococcus parauberis NCFD
           2020]
 gi|326906900|gb|EGE53814.1| ATP-dependent DNA helicase PcrA [Streptococcus parauberis NCFD
           2020]
          Length = 764

 Score = 89.2 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 86/698 (12%), Positives = 195/698 (27%), Gaps = 128/698 (18%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
           ++     T +A +E+R     +    +TI  +I +   +       +       N     
Sbjct: 54  NILAITFTNKAAREMRDR--ALALNPATIDTLIATFHSMCVRILRRE-ADHIGYNRNFTI 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++             L P+       S    I  AKN  D++D     
Sbjct: 111 VDPGEQRTLMKRILKSLN---------LDPKKWSE--RSILGTISNAKN--DLLDE---- 153

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                 +   +      +  + A       K + E L    A       +  +R    + 
Sbjct: 154 -----KIFEAQAADM--YSQIVAR----CYKAYQEELRRSEAMDFDDLIMMTLRLFDTNK 202

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L+  +A+      V+   D       W     +
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P   +  L +     +  ++   +V      R              
Sbjct: 261 NILDFEK-----DYPSAKVVLLEENYRSTKTILQAANDVIKNNQNRR------------- 302

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKKKSALITA 394
                   + K+         +    A++E +EA+ IA  +       ++N K  A++  
Sbjct: 303 --------DKKLWTQNADGEQIVYYRANDEHDEAVFIASTISNMCQGNEKNFKDFAVLYR 354

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++    +  I   +  G    +      + S LN I   +D ++   +V  P 
Sbjct: 355 TNAQSRTIEEAFLKSNIPYTMVGGTKFYSRKEIRDVISYLNIIANPSDNISFERIVNEPK 414

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G       R       +          +MD  S +L      K    +         
Sbjct: 415 RGVGPGTMEKLRLFAFQNEM---------SLMDASSNLLMSPLKGKAAQSIMD------- 458

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK--- 571
                              L     +      NL+I++ T+  +     +     +    
Sbjct: 459 -------------------LANLLLDFRLKLDNLTITELTEQLIDQSGYLEALRIQNTLE 499

Query: 572 -LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
               +   EE  +++  F          ++        +  L             + + +
Sbjct: 500 SQARIENLEEFISVTKNFDDNQNNVEEDESGLDRLGRFLNDLALIADTDNGDADVAEVTL 559

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L F  + L G+ EGV+P + A               +   +   +    +  
Sbjct: 560 MTLHAAKGLEFPVVFLIGMEEGVFPLSRAS--------------EDPAELEEERRLAYVG 605

Query: 691 ANGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723
                 +++     TR+L   +     +R+L+ +    
Sbjct: 606 ITRAEQVLFLTNANTRTLFGKSSYNRPTRFLREISDQL 643


>gi|229160194|ref|ZP_04288193.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus R309803]
 gi|228623155|gb|EEK79982.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus R309803]
          Length = 1166

 Score = 89.2 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 97/893 (10%), Positives = 212/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMKPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYSTH-------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGSGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GATYPEGEDVAAELLCIQQTEEEVQDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KNDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E  + RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEELAMLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIASSLYR 858

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             R       L + +IP     +     V    G         + +         +     
Sbjct: 859  HRDSEMLLELGQGSIPGEIYEYDTNWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 918

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ--LINDPYAVYARRILKL----DF 795
               +R +           Y          S +EIK+     D       + L+       
Sbjct: 919  LQSERKEEVYDRLLWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNAFIKKLRAPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P     +++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITAETLQEQIAGMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------IHLTGFAD 903
                  K+   F     K   + + +   +P  M + +              I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEEAILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|269793285|ref|YP_003318189.1| Exodeoxyribonuclease V [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100920|gb|ACZ19907.1| Exodeoxyribonuclease V [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 1125

 Score = 89.2 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 92/842 (10%), Positives = 203/842 (24%), Gaps = 101/842 (11%)

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
            W      + +  + +    +     S             E         ++I     +  
Sbjct: 357  WRELNRLVALGWQAFDHMRLSSGQLSFQDLISTACGLL-EGEGPSPFKHVLIDEFQDTDG 415

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
               RL   +     GA +    D       +        +              S     
Sbjct: 416  VQFRLAEALMR--RGAHLFVVGDLKQSIYRFRNADLSLFDKVIRLAPVVVSLAESRRSTP 473

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
              +D+     +  G+        S       L P T D  +   +        +   +V 
Sbjct: 474  QVIDL---VNRIFGSAFAHGIDPSTSEEYEPLRPLTEDRSDPLPVVVTPDEGAQSKGEVL 530

Query: 361  LIEADNEREEAISIAIALRMSLDENK------KKSALITADRNLARRVKLELTRFGINID 414
                 +  +E + +        D            A++   R   + V   L    I   
Sbjct: 531  RSACASLAKEFLRMHREGHPVRDREGTRPCRWSDFAVLVPTRGSYQAVSAALEDLNIPHA 590

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
            + + +  ++   S  L +L+ A+      +    +   PL                    
Sbjct: 591  LCSSMDFASRFESRDLEALVAALGGDRSPLGALKVAMSPLFGQRM--------------- 635

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                         L+   +  +A               +         L   +       
Sbjct: 636  -----------YHLRQSEVGSLAKAGGEVISSLSPISDAAGASWALDHLFKPLHWL---- 680

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
             +    ++ T   L++    +L +    ++          L  +  G  +        + 
Sbjct: 681  -SNVRGQDRTRVLLNLRHARELLMEYEAHMGPGAQGAGEYL-TQALGNRVEEPEIPPDDA 738

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
               +  +A + ++     +       +        I   L +   +       G    + 
Sbjct: 739  VRVMTVHAAKGLEFPITAVL-LKPSQRGGNGDRYRISRRLLAVPSSSLVEDAAGEEGVLA 797

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
              ++               L+ + +        +      R  +         +P    R
Sbjct: 798  KASSL--------------LEESAEAWESLRLFYVACTRARDRLIL------VMPDGKDR 837

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            W Q +    G D   +L+          R  +          P   P         S + 
Sbjct: 838  WGQEVTRALGEDAVRSLRIETPPQAPVERGAESGIGTQPVDAPSRAP----ALVQMSATS 893

Query: 775  IKQLINDPYAVYARRILKLDFI---PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
                   P A        LD         + P   D GTL H I++       + +   I
Sbjct: 894  YSLFKFCPAAYRMTFRQGLDPKWGGDFVHRGPGGADLGTLAHWIMSRW-----DGDPDTI 948

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH------EEKIQSSIEKIFVNI 885
               +         +E     +  +      ++     +       E             +
Sbjct: 949  RGAI-------LREEVPQEVLMALEDPGLPELMGWLRDFARSPLGERFRDLLRRGAGREV 1001

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
            P ++ I+  G  + G  D + L       I DYK     +    Q+L   Q+     A++
Sbjct: 1002 PFRVTIQG-GFRMVGAMD-LYLDDPSGPVIRDYKI--THQDNPIQELYRHQMLFYGLAVR 1057

Query: 946  AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
                  I  R   ++   RL+ +          +    D + E+ L+   +  +   +G 
Sbjct: 1058 R-----ITRRDP-DMAIWRLRPQEGSFEEI-PVETPDWDRMEEELLQVARKAASGPFDGN 1110

Query: 1006 QP 1007
              
Sbjct: 1111 PG 1112


>gi|257066034|ref|YP_003152290.1| ATP-dependent nuclease subunit B-like protein [Anaerococcus
           prevotii DSM 20548]
 gi|256797914|gb|ACV28569.1| ATP-dependent nuclease subunit B-like protein [Anaerococcus
           prevotii DSM 20548]
          Length = 1121

 Score = 89.2 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 24/170 (14%)

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            SEI+     PY  +      L        + D  + G + H +  ++ +    KN  E+
Sbjct: 772 VSEIESYSRCPYKYFVNY--GLRPNIDESYEVDHMEVGNIVHKLFEDISRNLSEKNIEEL 829

Query: 832 NH-LMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKI---------QSSIEK 880
               ++ I+  +F++  L               I ++ L   ++              + 
Sbjct: 830 KASDLEDILIENFKEATLRNLDKTRRENPRNKFILNNVLNSAKRNSEKLIDQVKSGDFKI 889

Query: 881 IFVNIPAKMA---------IESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
             V                ++     L G  DRID   + FV I DYKTG
Sbjct: 890 YAVEKDFGYENEDNLPKVYVDDKNY-LRGRIDRIDKAGN-FVRIIDYKTG 937


>gi|159901112|ref|YP_001547359.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894151|gb|ABX07231.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 758

 Score = 89.2 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 75/759 (9%), Positives = 197/759 (25%), Gaps = 108/759 (14%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV-- 103
           ++     T +A +E+R     + G+      ++ +   +       D+      N  V  
Sbjct: 55  NILAVTFTNKAAREMRERIGNLIGESRAHDVMMGTFHSICARWLRRDIQHLQRANDFVVY 114

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               +   + +++                    +           A++++   D I    
Sbjct: 115 DADDQQRVMKQILRELDLSEKQYNPRSIHARISAAKNEMIGVAEFARSVSSYFDEIVLRC 174

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-- 221
                                        + + ++L+  NA       +  +     H  
Sbjct: 175 ----------------------------YERYEKQLLANNALDFDDLLLKTVNLFEYHPD 206

Query: 222 ---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      L++ V    N        D       W      +
Sbjct: 207 VLARYAERYVHVMVDEVQDTNRVQFSLINQVGAGHNN--YFLIGDIQQSIYAWRGARLAN 264

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       HP   +  L               +    +     +I  ++    T+ 
Sbjct: 265 VREFE-----EAHPDVQIIPLEQNYR----------STQPILDVAQSIIDAAYDRRHTTK 309

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITAD 395
           +                   V+L+EA +  EEA  +A  +        +     A++   
Sbjct: 310 IWTDQQDGEL----------VSLVEAYDHNEEARWVADEIMRIRGREGRSLDDFAVMYRT 359

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R  +  +    +   +  G           + + L  I   +D +++  ++  P  
Sbjct: 360 NAQSRAFEEAMISRNLRYRLVGGTRFYERKEIKDVVAYLRIIHNPHDEVSLLRVINVP-- 417

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                                  +       +L     +   +  +   +       S  
Sbjct: 418 ---------------------GRSIGDRTQQELLQWARNLDVSIWDALELLATNEAQSPP 456

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
               A   V+   + +  L   + +         + +        LQ + + E+ +    
Sbjct: 457 ISGRARNAVEQFQKLVASLRDLRHDLMLGELIQRLLERV-----PLQELLVAEYGEEEGA 511

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              E    L ++  + +   +  +     +++ +  + D +++    E+   + ++   +
Sbjct: 512 ERWENILELQNVSMEYLALPTEDQLPR--FLEEVALVSDVDSLDSNKEREPGVTLITLHQ 569

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L +  + L GL EG+ P   + +   S   +  L      +   +    +       
Sbjct: 570 AKGLEYPVVFLAGLEEGLLPHGRSVDDPESIEEERRLLYVGTTRAKQRLYMLYA------ 623

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
              + R+       TI SR+L  +      D       R    +       + +  P   
Sbjct: 624 ---FKRATWGRTDITIPSRFLGDIP----KDLLQRTPTREVKQMPVHAASQWQSSTPQRT 676

Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
           R                   K+   +P A       K+ 
Sbjct: 677 RGTQPSTSSMWSGASGPVRPKRPEREPSAASYSAGDKVR 715


>gi|332531638|ref|ZP_08407535.1| UvrD/REP helicase [Hylemonella gracilis ATCC 19624]
 gi|332039001|gb|EGI75430.1| UvrD/REP helicase [Hylemonella gracilis ATCC 19624]
          Length = 714

 Score = 89.2 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 89/716 (12%), Positives = 194/716 (27%), Gaps = 93/716 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +T    T +A  E+R     + G+ +  +  I +   +       D            
Sbjct: 49  QRITAITFTNKAAAEMRERTKGLIGRDAKKV-RICTFHALGVHLLRGDGEALG------- 100

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                     L   +     D +  +  ++  S   + A            I   +    
Sbjct: 101 ----------LKANFSIMDSDDVTSILKDAGGSTDAATARQWQWT------ISKWKNAGL 144

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
                 A           + A  +    +  T     ++    +G  + L+R   E   K
Sbjct: 145 TAAQAEAQAAGDN---ERITAKIMARYEERLTA-YQSVDFDDLIGLPLKLLREHPEVRAK 200

Query: 225 GTK--GPIIIAGSTGSIPATARLMSTV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +  G I++     +      L+  + ++ P  A      D       W   T  +   
Sbjct: 201 WQQMMGHILVDEYQDTNATQYELLKLLTSDDPQRAHFTAVGDDDQSIYGWRGATLDNLKK 260

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
              +      P   + KL               + S  +   + VI  +      +    
Sbjct: 261 LPIDF-----PNLRIIKLEQNYR----------STSAILQAANNVIGPNPKLFPKTLWSE 305

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRN 397
               E            V +++ADNE  EA  +   ++   +       K  A++    +
Sbjct: 306 LGEGEP-----------VRVVDADNEEHEAERMVARIQSLRENSQHKEFKDFAVLYRANH 354

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L +  I   +S GI          L + L      +D  A    +  P    
Sbjct: 355 QSRILEQALRKANIPYKVSGGISFFDRAEIRDLCAWLRLWVNNDDDPAFLRAITTPKRGI 414

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMD-LKSLVLDRIATQKNNTHVPHWQSRLSEED 516
           G          +    V+L     S  +   L S  +D +       +   +++R +E  
Sbjct: 415 GHQTLQALGTFSGKYKVSLFEALFSSSLPSVLNSRAVDSLHEFGRYVNDLEYRARHTEGK 474

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
           +     L++        L      K                   L        R    + 
Sbjct: 475 EAALAFLLEW-------LKDIGYEKFLYDSEEHEKAAQSRWTNVLDFCDWMAGRCGGEIE 527

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            E                G+   +     +D+   +    T+  + +  + + +     +
Sbjct: 528 DE-----------NGANFGNNFASEKKSLLDVAQTVSLISTLSERQQDQNLVTLSTLHAA 576

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-------NLKTAEKYIGQAAHDFE 689
           + L +  ++L G+ EG+ P         +   Q +            AE+   +    + 
Sbjct: 577 KGLEWPHVMLIGVCEGLLPFKLDDGADSAGGSQREHEASDAVMGAAIAERLQEERRLMYV 636

Query: 690 MANGT-RHLIYTRSLRENNI----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                 R L  +   R            SR++  +  L      ++ +++ +    
Sbjct: 637 GITRAQRTLAVSWPKRRKKGREMIAAQPSRFIAEM-ALSQATVKEDPREKLRALRA 691


>gi|114568640|ref|YP_755320.1| DNA helicase/exodeoxyribonuclease V A [Maricaulis maris MCS10]
 gi|114339102|gb|ABI64382.1| DNA helicase/exodeoxyribonuclease V, subunit A [Maricaulis maris
            MCS10]
          Length = 1183

 Score = 89.2 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 86/863 (9%), Positives = 194/863 (22%), Gaps = 138/863 (15%)

Query: 172  LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE---------HL 222
            +K         +A   +   ++ ++E L +  A              A          + 
Sbjct: 335  IKRADIARASAVALRIVDDFTRAYSEALEQARALDFDDLIRLAGLLLAPENPFSGWVGYK 394

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTV--------ANHPNGAIVLPGLDCHIPTAIWNTI 274
            + G     +I  +  + P    ++  +             G  +    D       +   
Sbjct: 395  LDGQLAHALIDEAQDTAPRQWDMIRGLTAEFFAGAGAQETGRTLFVVGDEKQSIYSFQGA 454

Query: 275  TEKSTNITSSNTTYSTH---PQYSLAKLLDFLDIKRE----------------DVKRLGN 315
                          S       +    L        E                ++K +  
Sbjct: 455  EPARFIEEGDRIAASAAAVELPFERPGLDVSFRSAPEILTAVDQAFEAKRPALEMKFVAG 514

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE-EAISI 374
             ++  + R      +             I + +       F  V L    + R+  A ++
Sbjct: 515  ATDLPFARYQGHRAARSHTPGCVEIWPAIPKPEKTEEGSIFDPVDLRARGSSRDVLAQTV 574

Query: 375  AIALRMSLDE-----------------NKKKSALI--TADRNLARRVKLELTRFGINIDI 415
            A  +   +                        A++           V  +L   G+ +  
Sbjct: 575  AGEIADMISRGDAVWEEKGGQFTQRPVRPSDIAILVWRRTGGFFEEVIRQLKLAGVPVAG 634

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            +  + L        + +L        D +A+A +++ PL     P K             
Sbjct: 635  ADRMVLRDQTAVKDMLALGRFAMTSGDDLALAEVLRSPLFDPVDPAKA------------ 682

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                        +    L  +A  + +           +    L   L            
Sbjct: 683  -----------GIDEQALYDLARSRTDL----------KRRGTLWNALFTSEDPRFADAR 721

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
            +  +          + D+    +            ++     EE    L    ++ ++  
Sbjct: 722  SALSALRDQADKSRLYDFFTGFLNARTPTGETRWARMFARLGEEARDPLQEFLARALQHE 781

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG-----LN 650
                     +I  I         +   ++   + ++    S+ L    +IL       L 
Sbjct: 782  REEGGALASFIARIEGEDVQIKREMSPDR-DEVQVMTVHASKGLERPVIILPDTTRSPLT 840

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA---------AHDFEMANGTRHLIYTR 701
                P     +  L    + D +         Q+            +      R  +   
Sbjct: 841  GKTTPIFAQTDCGLLWSQRKDDDTDAVAALRQQSENRQLAEHGRLLYVALTRARDRLIVC 900

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
              R+        R           + +    +    +     +L    +      P P  
Sbjct: 901  GWRQGQGH--PGRIADDSWYTQLAEAWQG--EEWMPFETPVSRLVEDAEPGLRFGPAPVA 956

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD-------------- 807
                       + +             +IL                              
Sbjct: 957  LGAVSEAGAGDTSLPAWARLAAPAEGGQILGAAPSSLLADADSEPAVLSPLADPGGHRFR 1016

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
            RG + H ++  L            +   +         +     I    R      +   
Sbjct: 1017 RGDVIHKLLQTL--------PDLPSDRREAAGQRFLAAQ---SDIAESDRAQILTETLGI 1065

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPK 925
            L+H +            +        +   + + G  DR+ +     V I DYKT   P 
Sbjct: 1066 LDHPDFAPLFGPGSRAEVALVGQAPGLPANMIIRGQVDRLVVTGD-EVLIIDYKTNRPPP 1124

Query: 926  K--ETAQKLIDPQLSLEAAALKA 946
                   K+   Q++   A L+A
Sbjct: 1125 ADVAAVAKVYLGQMATYRALLRA 1147


>gi|167635407|ref|ZP_02393721.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0442]
 gi|254740248|ref|ZP_05197940.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Kruger B]
 gi|167529235|gb|EDR91988.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0442]
          Length = 1241

 Score = 89.2 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 92/899 (10%), Positives = 212/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVKYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 927

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 928  APSLYRHRDSEMLLKLGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      +   K       +       + S   +                ++ +    R 
Sbjct: 988  EKKAVPLESERKEEVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIQTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEILQEQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKS 1218


>gi|222444703|ref|ZP_03607218.1| hypothetical protein METSMIALI_00316 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434268|gb|EEE41433.1| hypothetical protein METSMIALI_00316 [Methanobrevibacter smithii
           DSM 2375]
          Length = 994

 Score = 89.2 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 126/946 (13%), Positives = 257/946 (27%), Gaps = 115/946 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +S+ +   T++A  EL+    E   K       I ++     +       ++  ++    
Sbjct: 48  SSLLVITFTRKAANELKDRLSEDIPKNIIDEMQISTIHSFCLDFLKKRGNVTNLIDDDSG 107

Query: 105 NIQRLLELARLILIWRNKLP-DIIKDLYPESPLSLPISPANAIWLAKNLADIIDII-ETE 162
             +RL      I  ++ KL       L      S+            ++  +ID I +T 
Sbjct: 108 EKRRLF-----IQKYKYKLGFKNEFYLADYQIPSVINKFDEYTTFKVDIDGLIDYIKQTR 162

Query: 163 EKKWEDLHAL------------KNEKYGMWWLLAADFLK--IASKYWTERLVELNASSPV 208
               E +  +            +NEK+   W  A  FL+   A   + E L   NA    
Sbjct: 163 PIDKEYVDFVNSFKFFPSKKVRENEKFKKSWYNA-RFLQTPKAYVKYLELLDLFNAVDYN 221

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
             QI  + +  E+        I++     + P  A +   +    N        D     
Sbjct: 222 TVQIKFLESLKENPET-QYTNILVDEFQDTDPVQAEIFEIL--LKNAESFTAVGDVDQSI 278

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             +            +               L  L+        +   S           
Sbjct: 279 YSFRGSFRDYFEEFYNKYNAE----------LISLNYNYRSTNNIIRTSEAFIKPQR--- 325

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD----E 384
                         +  +  +   +       ++E+ + +EEA  I   ++   D     
Sbjct: 326 -------------KEYSKKYLVGARNEDKASYILESLDPQEEAQKIFNLIKDLKDNGKIR 372

Query: 385 NKKKSALITAD---RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                A++            +  E  +  I+  IS    L  +     + +L   I +  
Sbjct: 373 QYSDVAILYRSIVSNKNIPFLIDEFKKNDISYHISGTEDLIESDEVKSILTLFYYIARKL 432

Query: 442 DFMAIAT-----LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           D+    +      +               +     +   +   +N  + + LK+      
Sbjct: 433 DYSYGMSNLEKEWLNLRAFCGIDFIPKFRKLSVETKRYLMELQENFENDV-LKTEKEVYF 491

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISD--- 552
                 +    +    +  +  L  +        +   L+    ++        + +   
Sbjct: 492 ELTGKKSRKNKFNGVFTRNEDVLIEIFKRVNKPVVDLDLIEDAGDREFFTELEKLRENVF 551

Query: 553 ---------WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA-NA 602
                      ++    L      +   + N  +E E + LS +   I    S I A + 
Sbjct: 552 SSDDEDKLTILEVYYELLNLCGYFDDLVINNGDYELELENLSKISRTIFNYESIISAKDV 611

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
                 +T +I+G            + ++   +++ L F   I+  L+E  +P       
Sbjct: 612 RGLFFFLTNVIEG--YGTSSSDVDGVQLMTVHKAKGLEFPVTIVSSLSEYNFPLAPRDPM 669

Query: 663 FLSRVMQSDLNLKTAEKYIGQ---AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
                +  D    T  K++     +  D                             Q +
Sbjct: 670 REKDNINKDDTFYTPNKFLEYKDCSEADEVNLGLAEENRVIYVAMTRA---------QDI 720

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
           LVL           R   Y +    LD  +      +P+            S+S      
Sbjct: 721 LVLSVVGKMPEEICRISNYFNKNLDLDNMSISSVGSKPE------ENKLNLSYSSFADYN 774

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
           N P+       L            + T  G++ H  +  + ++  +         M++I 
Sbjct: 775 NCPWRYNLLNKLHFKVSQK-----EVTKMGSIIHEALDVINQEIKDSG-EISKENMEKIA 828

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
              +                F     S  ++  +I   I  +   +P    I+       
Sbjct: 829 KDTYYLHGGTD-------EEFDDYMDSIFDYYNEIGFDITVVDSEVPFS--IDRDNYRFN 879

Query: 900 GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
           G  D I   ++G   I DYK     K    +K    QL     ALK
Sbjct: 880 GAIDLIYKNQNGEYGILDYK-NTIFKDYNREK-YAQQLLTYILALK 923


>gi|153000572|ref|YP_001366253.1| exodeoxyribonuclease V subunit gamma [Shewanella baltica OS185]
 gi|151365190|gb|ABS08190.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS185]
          Length = 1270

 Score = 89.2 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 90/799 (11%), Positives = 198/799 (24%), Gaps = 118/799 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVT----IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
             L  +       PL  A +     I V +      LR E  +  G  + +      L  
Sbjct: 11  EVLCAHLAAYLTQPLAFARLLSNEHILVQSPGMSTWLRLEIAKQNGIAAALE---FPLPS 67

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
               +   DLL     +   +      +L +L+              Y  + L    +  
Sbjct: 68  SFTWQLCHDLLPDVPKDNAFTKAAMTWKLMQLLPRMLQDDAFGPLRHYLGNTLENTPTIN 127

Query: 144 NA------------------IWLAKNLADIIDIIETEEKKW----------EDLHALKNE 175
            A                    L   +ADI D        W          + L    NE
Sbjct: 128 TADTCEHLNTSDMTADDIKLYQLCGRIADIFDQYLVYRPDWILAWEQNEHPDSLTKSLNE 187

Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--AEHLMKGTKGPIIIA 233
                W         A   +    +  +          L+ A    +  +      + + 
Sbjct: 188 DQR--WQPILW---RALIAFNRDELNQSHYHRANLHSDLIAALNNPDTSLAQLPQRLFVF 242

Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA----------IWNTITEKSTNITS 283
           G +   P T  ++  +A   +  ++      H                    ++      
Sbjct: 243 GISSMAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAELW 302

Query: 284 SNTTYSTHPQYSL-----AKLLDFLDIKREDVKRLGNV---SNEMYGRSMVISKSFLPPD 335
                  +P  +       +LLD L     +    G+                 S L   
Sbjct: 303 EEKLEVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNDPHSHASMLHGV 362

Query: 336 TSDMRNTDILENKIPNIQ-------------KCFSDVALIEADNEREEAISIAIALRMSL 382
             D+     L+  +                 +    + +    +   E  ++   L   L
Sbjct: 363 QYDILEMQTLDRVLGPDAELYQNVENRRLFKRDDQSIRVKSCHSPLREVETLHDHLLELL 422

Query: 383 ----DENKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSL 433
               D   K   ++  D          +         I   I+       +   +   +L
Sbjct: 423 SNHADLTPKDIVVMMPDVAAYAPYIDAVFSAKQGLHYIPYAIADRGAAQESPLINSFLNL 482

Query: 434 LNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDI--MDLK 489
           L           I ++++ P  L +F   +  L   +  L+   +R  +N        + 
Sbjct: 483 LGINQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRNEQSRLKQGVP 542

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELA------VLLVDHILQCITPLVTYKTNKNS 543
           +   +  A       + +  S  +   ++              + + +  +         
Sbjct: 543 AFEQNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQALGKLLNFIEVLDETAQI 602

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG-------- 595
                  +         L      +  +   L  +E    +++L  +++  G        
Sbjct: 603 LALPQVGALRLAELTELLDAFYDTDEDEREQL--QEIRDAIAALEQELLSAGKPLDTNSL 660

Query: 596 -------------SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
                        S +  +         + +    V  +     ++     +  R + F 
Sbjct: 661 DTSMFVTLAQQSISGLSLSIEVLQQWFNQRLTESRVGQRYLAG-SVNFCTLMPMRSIPFK 719

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
            + L G+N+GV+P+      F             + +   +      + +    L  +  
Sbjct: 720 IVCLLGMNDGVYPRVQHPVGFDLMAHFGARKGDRSRRLDDRYLFLEALLSAREQLYISYI 779

Query: 703 LRE--NNIPTIASRWLQRL 719
            R   +N   IAS  +  L
Sbjct: 780 GRSERDNSERIASMLVSEL 798


>gi|229028911|ref|ZP_04185012.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1271]
 gi|228732482|gb|EEL83363.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1271]
          Length = 1166

 Score = 89.2 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 93/893 (10%), Positives = 212/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMKPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GASYPEGEDVAAELLCIQQTEEEVQDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM----A 691
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 858

Query: 692  NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            +    ++                   ++ V+ G         + +         +     
Sbjct: 859  HRDSEMLLELGQGSIPGEIYDYDTSWKVEVVDGGTLLAPEPVQEEKQELLEALREKKAVP 918

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 919  LQSERKEEVYDRLMWKYGYDEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKMRAPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITEEVIREQISGMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIHLTGFAD 903
                  K+   F     K   + + +   +P  M +                I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGQSGESILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|228899819|ref|ZP_04064065.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL
            4222]
 gi|228859838|gb|EEN04252.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL
            4222]
          Length = 1166

 Score = 89.2 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 96/893 (10%), Positives = 215/893 (24%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  AFQYRNKFTEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      +    RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEDLATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
              +K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 858

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             R       L + +IP     +     V    G         + +         +     
Sbjct: 859  HRDSEMLLELGQGSIPDEIYGYDTNWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 918

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 919  LQSERKEEVYDRLMWKYGYEDATSYRAKQSVTEIKRNYQSEEGSDNAFIKKLRTPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------IHLTGFAD 903
                  K+   F     K   + + +   +P  M + +              I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|297195363|ref|ZP_06912761.1| RecB family exonuclease [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719267|gb|EDY63175.1| RecB family exonuclease [Streptomyces pristinaespiralis ATCC 25486]
          Length = 277

 Score = 89.2 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 80/264 (30%), Gaps = 32/264 (12%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S S     +  P     R I KL          +   RGTL H ++  L      + T 
Sbjct: 1    MSPSRASDFMQCPLLYRFRVIDKLPEK-----PSEAATRGTLVHAVLERLFDDPAAERTA 55

Query: 830  EINHLMKQIIDSHFE----------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                 M     S              E+        W     ++   +   E+  +  +E
Sbjct: 56   PRAKAMVPGQWSRLLQTRPELGELFAEDPGGERLSRWLGEAEQLVERWFTLEDPTR--LE 113

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
                 +  +  +ES G+ L G  DR+D+  +G V I DYKTG  P+     +    Q+  
Sbjct: 114  PREREMFVETELES-GLRLRGVIDRVDIAPTGEVRIVDYKTGKAPRP-EYSEGALFQMKF 171

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
             A  +       +       L  + L     +                E+  + L+ +  
Sbjct: 172  YALVIWR-----LKQVVPRRLQLVYLGSGDVLTYDPVTAD-------LERMERKLLALWE 219

Query: 1000 LLQNGEQPFISHLRLSEKSNIQSE 1023
             ++   +      R ++      +
Sbjct: 220  AIRLATETGDWRPRPTK-LCGWCD 242


>gi|125718261|ref|YP_001035394.1| exonuclease RexA [Streptococcus sanguinis SK36]
 gi|251764569|sp|A3CNT9|ADDA_STRSV RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|125498178|gb|ABN44844.1| Exonuclease RexA, putative [Streptococcus sanguinis SK36]
          Length = 1224

 Score = 89.2 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 91/854 (10%), Positives = 211/854 (24%), Gaps = 107/854 (12%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGST 236
             L  DF+   ++ + ER    NA          +             +     +++    
Sbjct: 366  ELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILETFPEVRRFYQERYHEVMVDEYQ 425

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS- 295
             +     R++  ++   N  +V    D       +     +  +            Q   
Sbjct: 426  DTNHTQERMLDLLSRGKNRFMV---GDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKL 481

Query: 296  ------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                      L+ L+   +  KRL +        +         P   +    +     I
Sbjct: 482  IVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKREPNPANRASFLI 541

Query: 350  PNIQKCFSDVALIEA---DNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK 403
                K   +    E         E   +   +    +E     K   L+TA R     + 
Sbjct: 542  YEGSKESPEEEADEGLPQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLIL 601

Query: 404  LELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                +  I +    G      ++   ++   L  I    +  A+  L+K P+  FG  E 
Sbjct: 602  AAFEQHQIPLVPDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDEL 661

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                 + + E       +   + ++ + L    +  +        +++  S         
Sbjct: 662  ARLSLQASQERSQENLYEKLVNALEGRGLNPALVTEELQKKLQHFYETLQSWRTYSKTHS 721

Query: 523  LVDHILQCITP------LVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNL 575
            L D I +          + T            ++S    +   +  + +          L
Sbjct: 722  LYDLIWKIYQDRFYYDMVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRIL 781

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              + +    S   +   +    +  +  + ++     +         + SS+  IL   +
Sbjct: 782  ENQHDL--ASVPVAAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTK 839

Query: 636  SRL--LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
                    D  +    +        + +    +   ++L L +  + +         A  
Sbjct: 840  GVGIKYVADVSVSVKDSYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAET 899

Query: 694  TRHLI--------------------YTRSLRENNIPTIASRW-----------LQRLLVL 722
              +L+                     + SLR          +                 +
Sbjct: 900  KLYLVGKGSQEALDKRQWGKSQQGRLSASLRSQISNFQDWLYAIQDVFSDENLAYETRFV 959

Query: 723  GGTDFFDNLKKR-GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-IN 780
               +       R  +  L     L    +    +R         +  +   S I+   + 
Sbjct: 960  TDEELTAEEIGRINEPVLFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVR 1019

Query: 781  DPYAV--YARRILKLDFIPHFKKDPDRT-------------------DRGTLFHNIITEL 819
             P  +  +   I+  D +    +                          G+  H ++  +
Sbjct: 1020 TPSQIKKFYEPIMDTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRI 1079

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                        + L +   D   +K+     I   +     ++             + +
Sbjct: 1080 PLDSSPSMAVLRSALAQVQADDAVKKQIQLSKIASFFETDLGRLL----------IENSD 1129

Query: 880  KIFVNIPAKM----AIESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
            ++    P  M            L G  D   +       + + DYKT             
Sbjct: 1130 RVRREAPFAMLKRDEASGQEFVLRGILDGYLLFED---RIILFDYKTDKYKDSSELIARY 1186

Query: 934  DPQLSLEAAALKAG 947
              QL L A AL   
Sbjct: 1187 RGQLDLYAQALSRS 1200


>gi|120404435|ref|YP_954264.1| RecB family exonuclease [Mycobacterium vanbaalenii PYR-1]
 gi|119957253|gb|ABM14258.1| putative RecB family exonuclease [Mycobacterium vanbaalenii PYR-1]
          Length = 304

 Score = 89.2 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 73/253 (28%), Gaps = 21/253 (8%)

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                   P    +    S S        P     R I +L              RGT+ 
Sbjct: 6   PSLDHMSEPTRPVRRPALSPSRASDFKQCPLLYRFRAIDRLPEPSS-----AAQVRGTVV 60

Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP------PHIDIIWRHLFHKISHS 866
           H  + +L +    +  P     +   +      E         P +          +   
Sbjct: 61  HAALEQLYRLPAVERGPATAAALVAPVWERLLAEQPSLAVDIEPALHGELLEQARALLSG 120

Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
           +  +  +  +  +        ++ +    + L G+ DRID+  +G V + DYKTG  P +
Sbjct: 121 Y--YRLEDPTRFDPQSCEQRVEVELVDGTL-LRGYVDRIDVAPTGEVRVVDYKTGKAPPE 177

Query: 927 ETAQKLID--PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
             A        Q+   A AL             + L  + L     +D   + ++    +
Sbjct: 178 ARALAEFKAMFQMKFYAVALLRS-----RGVLPSRLRLLYLADGQVLDYSPDLEELERFE 232

Query: 985 ELSEKSLKNLIEI 997
           +      + +   
Sbjct: 233 KTLMAIWRAIQSA 245


>gi|54297724|ref|YP_124093.1| hypothetical protein lpp1775 [Legionella pneumophila str. Paris]
 gi|53751509|emb|CAH12927.1| hypothetical protein lpp1775 [Legionella pneumophila str. Paris]
          Length = 1076

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 85/757 (11%), Positives = 207/757 (27%), Gaps = 136/757 (17%)

Query: 201  ELNASSPVGYQIALMRAEAEHL--------MKGTKGPIIIAGSTGSIPATARLMSTVAN- 251
            E N           + A  +          +  +   ++I     +      L++ +   
Sbjct: 372  EHNEVDFTAISQQALAALGDLDNPTDLALYLDHSIHHLLIDEFQDTSITQFELLTKLVQG 431

Query: 252  --HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 G  +    D       +             +          L  L   L      
Sbjct: 432  WLPGEGKTLFLVGDPMQSIYRFRQAEVGLFFQAKEHGIGPV----RLKSL--ELRCNFR- 484

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                 +    +   +   SK F      +        +     +   S +  ++  N  +
Sbjct: 485  -----STETIVNWVNDHFSKIFSQQVDIESGAVSFHPSVHVIEKNESSTIQAVQFKNREQ 539

Query: 370  EAISIAIALR-MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            EA  +   +        ++  A++   R     +   L +  I    +    L+  +H  
Sbjct: 540  EARHLIEIINSELNRNPEQTIAVLVRTRTQLPEIISLLRQNNIPYQGTDIDLLANLVHLR 599

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
             + SL +A+    + ++  +++  P    G  + +             R +     +   
Sbjct: 600  DVWSLAHALLFPGNRLSWLSILHSPYVGLGLSDIHCIA------QYNSRKSIYHNLLH-- 651

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                                         +    + +         +           + 
Sbjct: 652  ----------------------------LDKIQDISEEGRIRANFFIQIMNQALLCRSHS 683

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             +SDW   T+  L    + +  +L +L   +    L    ++          +  E+++ 
Sbjct: 684  RLSDWIADTLKNLHVEKILDKAQLNDLE--QLWMLLDQYENE------GRIPDMNEFLNE 735

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL--SR 666
              +L   +T        S L I+   +S+ L FDT+IL GL       ++    +L    
Sbjct: 736  FNKLYAQQTTP------SQLQIMTIHKSKGLEFDTVILPGLGAQASRGDSPMLRWLKLPT 789

Query: 667  VMQSDLNLKTAEKYIGQAA---HDF----------EMANGTRHLIYTRSLRENNIPTIAS 713
                +L L +  K   Q +   +D+            A    ++  TR+           
Sbjct: 790  QHHGNLLLVSPIKSANQDSCPLYDYLDQLDEEKSAYEAQRLLYVAVTRAKS--------- 840

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
                   +        + K   +  L +   +    +  H ++  P P            
Sbjct: 841  ------RLYLLDHSAKSYKSSFRNLLKYQEFIADPDEAQHEEQEFPLP------------ 882

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPD----RTDRGTLFHNIITELIKKRINKNTP 829
               +L+  P   Y ++I  L                   G + H ++  +          
Sbjct: 883  ---KLVKLPIEYYQKQIPSLVQSQESSCPEISSGIPRLIGIVSHQLLQWICDNHPQTIDH 939

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS----FLEHEEKIQSSIEKIFVNI 885
               +L+   + +    +        + ++   ++  +    ++    + + +  ++ V  
Sbjct: 940  VPWNLVNNELKTLGLNQEAQQTALSMIKNQISQMYENKIGLWILSRHENEQNEYELLVEY 999

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
              K+        +T   DR  + ++G   I D+KTG 
Sbjct: 1000 ENKL--------VTRIIDRTFI-ENGTQWIIDFKTGK 1027


>gi|329891017|ref|ZP_08269360.1| double-strand break repair helicase AddA [Brevundimonas diminuta ATCC
            11568]
 gi|328846318|gb|EGF95882.1| double-strand break repair helicase AddA [Brevundimonas diminuta ATCC
            11568]
          Length = 1119

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 90/947 (9%), Positives = 213/947 (22%), Gaps = 129/947 (13%)

Query: 59   ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL------ 112
            EL      +   ++   P    L     +K   D+   +        ++R+ EL      
Sbjct: 208  ELTDYVARVADGRA---PGPYVLTGADPQKTPEDIEADFLRWLDRGEVRRMAELMATGSK 264

Query: 113  ------ARLILI----WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                  A LI      W      ++      SP     +       A  LAD+ D     
Sbjct: 265  TDKDRAAELIHALDHDWSFHGLGVVFLTGSGSPRKSMATSKAPPDAAGWLADLQDKF--- 321

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                     L+  K     +         +  +        A          +       
Sbjct: 322  ---LAARDQLRAAKVANDTIRLLTLANAHAALYEAAKTAHGALDFSDLVARTVELLTVRS 378

Query: 223  MKGTK--------GPIIIAGSTGSIPATARLMSTVANH-----PNGAIVLPGLDCHIPTA 269
                           ++I  +  + P    +M  +             V    D      
Sbjct: 379  TAAWVLYKLDGGVDHVLIDEAQDTAPEQWAIMRALTGEFFTVEGTDRTVFAVGDEKQSIY 438

Query: 270  IWNTITEKSTNITS---SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
             +     +     +             +    L          +  +  V         +
Sbjct: 439  SFQGARPERLRQEAQVYDGLITGAGGAFEGVPLETSYRSTEAVLSFVDEVFATPERARAL 498

Query: 327  ISKSFLPPDTSDMR---------NTDILENKIPNIQKCFSDVALIEADNER-EEAISIAI 376
            + ++   P  +  R             ++   P        V      + R   A ++A+
Sbjct: 499  VGETGEIPHHTAARQGQPGAVELWPLFVDEAPPERDAWTDPVDQEGTASARKRMAQTLAL 558

Query: 377  ALRMSLDE---------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
             ++  ++                      L+         +   L   G  +  +  + L
Sbjct: 559  EIKRQVESGAVVFDKSGSARPCGYGDFLILVRRRDATFEEIIRALKAAGAPVAGADRLKL 618

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            S  +    L +L        D + +A +++ P         +    +   + +       
Sbjct: 619  SQHIVFDDLKALARFALFPGDDLTLAEVLRGPFCDVDEDSLFELAGREKRDGL------- 671

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                 +LK    +R    +    +   +     +       L++ +             +
Sbjct: 672  ---WRELKRRADERPEWSRALDLLRAARGARDLDPFGFFSSLLNRVDATGQSGRARILTR 728

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                   ++ +     +       +D    L  L        +             +  +
Sbjct: 729  LGREAEEAVDETLNQVLAAEGRGGIDLETCLALLE--AADVEVKRELEGPRGEVRVMTVH 786

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
              + ++    ++   T+K K +  S   ++       +    +  G   E       A+ 
Sbjct: 787  GAKGLEAPVVILPDTTMKAKAQGPS---LMPVPLEDGVEAWLMCPGSSKEDCPASAEARA 843

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
               +RV    L L             +      R  +          P            
Sbjct: 844  AREARVGDESLRLL------------YVALTRARDRVIVMGRGSKRAPEA---------- 881

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                D++  +++      D  R+LD   ++           + A                
Sbjct: 882  ---GDWWSVIEETFGRLGDQVRELDGGVRRYGADPDSLPAAVAAAQMRAEPPXXXXXXXX 938

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
                                                                   ++I +
Sbjct: 939  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEMIAA 998

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
             F   +              + +  F            +  V +         G+ ++G 
Sbjct: 999  AFGVLDD------------ARFAPVF--------GPGSRAEVALTGTAPDLPSGVSISGR 1038

Query: 902  ADRIDLLKSGFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKA 946
             DR+ +     V + D+K+        E A      Q+++ AA L+ 
Sbjct: 1039 IDRLVVTP-QRVLVVDFKSNRPAPDQAEDADPAYILQMAIYAAVLRR 1084


>gi|25027486|ref|NP_737540.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
           YS-314]
 gi|23492768|dbj|BAC17740.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
           YS-314]
          Length = 825

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 89/734 (12%), Positives = 205/734 (27%), Gaps = 88/734 (11%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +    RY  ++P     +     T +A  E+R    ++ G  +  +  + +  
Sbjct: 74  TAVLTRRIAYLMRYRGVHPQ---QILAITFTNKAAAEMRERVADLVGPVAQRM-WVATFH 129

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            V                         + + R        L         +    L    
Sbjct: 130 SVC------------------------VRILRQQAQLVQGLNTNFTIYDSDDSRRLLTMI 165

Query: 143 ANAIWL------AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
           A  + L      A+ L+  I  ++ E     +  A     +  +  + A         + 
Sbjct: 166 AKDLELDIKKFSARTLSSAISNLKNELISPSEALADAERTHNPFETVVAR----VYVEYQ 221

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVAN 251
           +RL   NA         ++R   EH       +     ++I     +  A  +L++ +  
Sbjct: 222 QRLRRANAVDFDDLIGEVVRIFTEHPQVAEHYRRRFRHVLIDEYQDTNHAQYQLIAILVG 281

Query: 252 HP--NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
            P  + + +    D       +   T ++      + T +             L+     
Sbjct: 282 RPDQDPSELCVVGDSDQSIYAFRGATIRNIEEFERDFTDARTIL---------LEQNYRS 332

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            + + + +N +  ++       L     +                    +    ADNE +
Sbjct: 333 TQTILSAANAVISQNENRRPKNLWTALGEG-----------------EKIIGYVADNEHD 375

Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
           EA  IA  +    D   +    A++    N +R ++    R G+   +  G         
Sbjct: 376 EARFIASEIDELADRGLSYSDMAIMYRTNNSSRALEEVFIRTGVPYKVVGGTKFYERKEI 435

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             + + L  +   +D + +  ++  P  +          A +A       G         
Sbjct: 436 RDVIAYLRVLENPDDTVNLRRIINTP-KRGIGDRAQAFVALHAENNRISFGQALVDAAAG 494

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
              L+  R        +      R         V  +  I Q I+ ++     K     +
Sbjct: 495 NVELLGGRGRNAVGKFNELMDTLRGELLSMVNEVTGMPDIGQVISRILDITGYKAELEAS 554

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
               D  +L    L  +         +        T+     ++ ++      +   +++
Sbjct: 555 NDPQDGARL--DNLNELVSVAREFSSDAANRMAYDTMDGSEPELDDSEPA-PGSLQAFLE 611

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            ++ + D + +     +   + ++    ++ L F  + L G  +G +P   +        
Sbjct: 612 RVSLVADADQI--PDNEQGLVTLMTLHTAKGLEFPVVFLTGWEDGQFPHLRSLGDAKELA 669

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
            +  L      +   +      M          RS   N +   ASR+LQ +        
Sbjct: 670 EERRLAYVGITRARQRLYVTRAML---------RSSWGNPVTNPASRFLQEVPEGLIDWR 720

Query: 728 FDNLKKRGQCYLDW 741
            +            
Sbjct: 721 REEPANSFGSAWAP 734


>gi|296165191|ref|ZP_06847738.1| RecB family exonuclease [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295899380|gb|EFG78839.1| RecB family exonuclease [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 313

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 74/263 (28%), Gaps = 22/263 (8%)

Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRT-YSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
             D T +     RP   P  +   +   S S        P     R I +L         
Sbjct: 11  AADMTDQPQTLARPAARPASKPASKPALSPSRAADFKQCPLLYRFRAIDRLPE-----AP 65

Query: 803 PDRTDRGTLFHNIITELIK-KRINKNTPEINHLMKQIIDSHFEKEN-----LPPHIDIIW 856
                RG++ H  + +L       +       L++   D              P      
Sbjct: 66  SAAQLRGSVVHAALQQLYALPAAQRGPDTALALLEPAWDQVVAAAPELAGEFEPAQRGQL 125

Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
                 +   +  +  +  +  +        ++ +    + L GF DRID+  +G + + 
Sbjct: 126 LAEARALLSGY--YRLEDPTRFDPQCCEERVEVELADGTL-LRGFIDRIDVAATGELRVV 182

Query: 917 DYKTGDNPKKETAQKLID--PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
           DYKTG  P    A        Q+   A AL               L  I L     +D  
Sbjct: 183 DYKTGKAPPAARALAEFKAMFQMKFYAVALLR-----TRGVPPTRLRLIYLADGQVLDYS 237

Query: 975 TNDKKKYSADELSEKSLKNLIEI 997
            +  +    ++      + +   
Sbjct: 238 PDHDELLRFEKTLTAIWRAIQTA 260


>gi|299066163|emb|CBJ37346.1| DNA helicase II [Ralstonia solanacearum CMR15]
          Length = 794

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 66/691 (9%), Positives = 169/691 (24%), Gaps = 84/691 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
           + V     T +A +E+ +    +     +      I +   +      A    +      
Sbjct: 53  SGVLAVTFTNKAAKEMNARLSAMLPINTRGMW---IGTFHGLCNRLLRAHYRDAG----- 104

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +    ++L+    +   +  L  +  D     P              K++   I+  + +
Sbjct: 105 LPQTFQILDTQDQLSAVKRLLKSLNIDDEKFPP--------------KSVQYFINGAKEQ 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
             +  DL                  +      +  +             +        + 
Sbjct: 151 GLRAGDLEIANEFDRR---------MADLYAAYDAQCQREGVVDFSELLLRCYELLRYND 201

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI----VLPGLDCHIPTAIWNT 273
                 +     I++     +       +  +A      +    +    D       +  
Sbjct: 202 AIRVHYQRRFKHILVDEFQDTNKLQYAWLKILAGLGEAGVTPNAIFAVGDDDQSIYAFRG 261

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
               +                        L+        + + +N +   +         
Sbjct: 262 ANVGNMVDFEREFRV---------AHRIKLEQNYRSHGNILDTANHLIAHN--------- 303

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSAL 391
                   T  L   +         V +  +  + +EA  I   +R   +    + + A+
Sbjct: 304 --------TRRLGKNLRTDAGHGEPVRVYPSATDGQEAGWIVEEIRERIASGTARSEIAI 355

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +      +R ++  L   GI   +  G+            + L  +   ++  A   +V 
Sbjct: 356 LYRSNAQSRVIEHALFSVGIPYKVYGGLRFFERAEIKHALAYLQLLENADNDAAFGRVVN 415

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P    G       +    L  V+L  +           L       ++           
Sbjct: 416 FPARGVGARSLEQLQDAAKLYGVSLAASVPYLTGAAGTKLAAFVRLIEQMRADTRQMTLP 475

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
              +    A  L+ H       L   +  +       +           +  +      +
Sbjct: 476 EIVQHVIHASGLITHYQGEKEGLDRIENLQELVTAAQAF---VAEEGYGVDAIATALPMR 532

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              +   E G+T S   ++++   +  +   +        L  G+           + ++
Sbjct: 533 HDAMLRIEGGETDSDAVTELVADETPTEMTPLVAFLTHASLEAGD--NQAQAGQDAVQLM 590

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + + GL EG++P   +         +  L      +   +    F   
Sbjct: 591 TVHAAKGLEFHVVFITGLEEGLFPHENSLQDTDGLEEERRLMYVAITRARERLYLSFAQ- 649

Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
                   +R L       I SR+   L   
Sbjct: 650 --------SRVLHGQIRYHIRSRFFDELPEA 672


>gi|326773434|ref|ZP_08232717.1| RecB family exonuclease [Actinomyces viscosus C505]
 gi|326636664|gb|EGE37567.1| RecB family exonuclease [Actinomyces viscosus C505]
          Length = 309

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 21/249 (8%)

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
           P     +       +    S S  K  +  P     R + +L            T +GT+
Sbjct: 22  PGASGRQGAGAGGGRRAALSPSRAKDFMQCPLMFRLRTVDRLPEPGSL-----ATHKGTV 76

Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL-------PPHIDIIWRHLFHKIS 864
            H ++  L     ++  P+    +     +   ++N               W      + 
Sbjct: 77  VHGVLERLYDLPASERLPQAALELLPGQWASHREKNPEVMDLFEDADQVETWLEEARGLI 136

Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924
            ++   E   +  +E     +  +      G+ L GF DR+D+   G + + DYKTG +P
Sbjct: 137 RTYFTLENPQR--LEPAERELFVQTETGD-GLLLRGFVDRLDVAPDGAMRVVDYKTGRSP 193

Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
                ++ +  Q+   A  L       +  R  A L  + LK    +       +    +
Sbjct: 194 GTRFMEEAL-FQMRFYALVLWR-----LRGRAPARLQLVYLKDGRVLTHDPRLAELERTE 247

Query: 985 ELSEKSLKN 993
                    
Sbjct: 248 TRLAHLWDE 256


>gi|323499833|ref|ZP_08104792.1| exonuclease V subunit gamma [Vibrio sinaloensis DSM 21326]
 gi|323315074|gb|EGA68126.1| exonuclease V subunit gamma [Vibrio sinaloensis DSM 21326]
          Length = 1152

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 113/931 (12%), Positives = 249/931 (26%), Gaps = 138/931 (14%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+ E  +  G  + I      L          ++L         +   
Sbjct: 34  QILVQSPGMSQWLKMELAKEFGVAANIE---FPLPATFIWNMFTEVLPDVPKRSAFNKES 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE---- 163
              +L +L+           +    +  L      +    L++ +ADI D          
Sbjct: 91  MTWKLMQLLPAMLE----QSEFEPLKRYLDQDHDSSKLYQLSEKIADIFDGYLVYRPEWI 146

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
             WE   ++   +    W        I  +   +  + L  S    ++  L     + L 
Sbjct: 147 ATWEAGESVAELEDEHPWQ------PILWQALYDHTLALGQS--PYHRANLYEHFIDSLE 198

Query: 224 ------KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN----- 272
                 +     + + G T   P     +  +  H +  ++      +    + +     
Sbjct: 199 SFSGQFEHLPKRLFVFGITSLPPRYMDALKAIGEHIDVHLMFTNPCRYYWGEVRDRKYLA 258

Query: 273 --------------------TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                                 T++       N     H       LL  +     D   
Sbjct: 259 RLAAKHRKHLVWKENQSQLEGETQQLKGSVEDNLIDELHTDVVGNSLLASMGKLGRDNMY 318

Query: 313 LGNVSNEMY-------GRSMVISKSFLPPDTSDMRNTDILENKIPN---IQKCFSDVALI 362
           L +              R  ++          +    D L     +   +      ++L 
Sbjct: 319 LLSQLESHEIEAFVEVERDCLLHHLQADILNLEEHQDDALLESSHHKQVVALGDRSLSLH 378

Query: 363 EADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINI 413
              +   E   +   L    D +     +   ++ AD N        +         I  
Sbjct: 379 ACHSPMREVEVLHDQLLAMFDADPSLKPRDIIVMVADINAYSPAIQAVFGNAPGERFIPY 438

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNAL 471
            IS       +   +    L+N          +  L++ P  L +FG  E+   +AK  +
Sbjct: 439 SISDRTADQESPILNAFIQLVNLPNTRCLASELLELLETPAILKRFGLNEEDFIQAKQWV 498

Query: 472 ELVALRGNKNSYDIMDL---------------KSLVLDRIATQKNNTHVPHWQSRLSEED 516
           E   +R   NS    +                + L+   +          H       E 
Sbjct: 499 EESGIRWGLNSATGHEFDLPTTVQNTWQFGIERMLLGYAMPESSGLFDSIHGALAPYNEV 558

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
           + +   L   +   I  +  Y+          SI  W ++    L +    E      L 
Sbjct: 559 QGMGAELAGKLAHFIQSIEHYRNQ---LAHPQSIDSWREVLTHLLDDFFAVELEGEVAL- 614

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            +    TL+ L  ++++     +         +   + G  V  +      +     +  
Sbjct: 615 -KSIRDTLAGLKEQLLDAAFEQELAPSIISQYLHNKLSGTRVSQRFLAG-QVNFCTLMPM 672

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           R + F T+ L G+N+GV+P++     F     ++    ++             M +  ++
Sbjct: 673 RSIPFRTVCLLGMNDGVYPRSMPPEGFDLMTGRTKPGDRSRRDDDRYL-FLEAMLSAQQN 731

Query: 697 LIYTRSLRE--NNIPTIASRWLQRLLV------LGGTDFFDNLKKRGQCYLD-------- 740
           L  +   R   +N   + S  +  L+                  + G   LD        
Sbjct: 732 LYISYVGRSIQDNTERVPSVLVSELMEYCHQNYCLQGQQALACDESGDRLLDALVTHHPM 791

Query: 741 --------WTRKLDYTTKQPHYKRPKPFPP------------LEAQPRTYSFSEIKQLIN 780
                      +  Y  +       +                  + P      E+++   
Sbjct: 792 VPFSPNAFLAEQPSYAKEWLPAANRQGQSSGDFNRQLSDYLCDASYPLGLDLVELQRFWR 851

Query: 781 DPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI---NHL 834
            P   +  R LK+     +P  + D      G   + +  EL+ + + + + +      +
Sbjct: 852 LPVQYFFNRRLKVMFEPPLPVMEDDEPFVLGGLESYQMRDELLTQLLAEQSGQPGSSREV 911

Query: 835 MKQIIDSHFEKENLPPHID---IIWRHLFHK 862
           +++ + +   +  LP           +    
Sbjct: 912 IERFVAAQRAQGKLPIGAFGDIEFETNRVQA 942


>gi|296110659|ref|YP_003621040.1| ATP-dependent DNA helicase PcrA [Leuconostoc kimchii IMSNU 11154]
 gi|295832190|gb|ADG40071.1| ATP-dependent DNA helicase PcrA [Leuconostoc kimchii IMSNU 11154]
          Length = 749

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 69/692 (9%), Positives = 171/692 (24%), Gaps = 115/692 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R     +               DV  + + +           V  
Sbjct: 56  RILAITFTNKAAKEMRERISALLS------------EDVARDIWVSTFHAL-----AVRI 98

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  E   L   +        K L       L +         + +  +I   + +  +
Sbjct: 99  LRRDGENIGLSRNFTIIDTSAQKTLMKRVISDLNLDTNQYDP--RTILGMISNAKNDMLR 156

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-----EAE 220
             D     +  +        + +      + + L    +       +  +       E  
Sbjct: 157 PRDYAKQADNAF-------QETVAEIYTAYQQELKRAQSVDFDDLIMLTIDLFQSTPEVL 209

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     + +     +  A   +++ +A       V+   D       W      +  
Sbjct: 210 TRYQNQFEYLHVDEYQDTNDAQYTIVNLLAKRSQNLAVV--GDADQSIYGWRGANMNNIL 267

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                               +  +              +     
Sbjct: 268 NFEKDYP--------------------------TAHTVMLEQNYRSTQNILDAANAVINH 301

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISI---AIALRMSLDENKKKSALITADRN 397
           N + +  K+         +    A  ER+EA  I      +R   +      A++     
Sbjct: 302 NNERVPKKLWTQNGKGDKIIYYRAQTERDEANFILSNVQKMREENNMAYSDFAVLYRTNA 361

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R V+  L +  +   +  G           + S +N I   ++  A   +V  P    
Sbjct: 362 QSRNVEESLVKANMPYTMVGGHKFYERKEILDIMSYMNLITNPDNNAAFERVVNEP---- 417

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                         L +  L+R+    N  +V +  +  S E  
Sbjct: 418 ---------------------------KRGLGATSLNRLRELANRLNVSYMTAIDSIELA 450

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL-DEHRKLPNLW 576
                           ++     ++       +++         Q +    +      L 
Sbjct: 451 PEISTKAASKFLVFADMMHDLRQQSEFLNVTELAELAMTRSGYRQMLAEKSDPDSQARLE 510

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             EE  +++  F +          + +   D +        +    E    + ++    +
Sbjct: 511 NLEEFLSVTKEFDEKYRADDPEAVDPMT--DFLGSTALMTDLDDFEEGDGAVTLMTLHAA 568

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + L G+ EG++P + +              L   +    +    +      + 
Sbjct: 569 KGLEFPVVFLIGMEEGIFPLSRS--------------LMDEDLLEEERRLAYVGITRAKE 614

Query: 697 -LIYTRSLRE----NNIPTIASRWLQRLLVLG 723
            L  T +             ASR++  +    
Sbjct: 615 KLFLTNAFSRLLYGRTQVNDASRFISEISPEL 646


>gi|311029443|ref|ZP_07707533.1| ATP-dependent nuclease, subunit A [Bacillus sp. m3-13]
          Length = 1255

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 117/959 (12%), Positives = 248/959 (25%), Gaps = 157/959 (16%)

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII----DIIETEEKKWE-- 167
             LI  W     D    +           P + +   + LA ++    D+++    ++   
Sbjct: 303  ELIERWTKVRNDAKAMVQGIKDELFSRRPESFLKDLEELAPVMGTLVDLVKRYGVEFSLM 362

Query: 168  -DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
                 L +        L           + E  VE              R+EA    + T
Sbjct: 363  KQDKGLVDFPDLEHLCL------NVLTTFNEGKVE--------------RSEAALRYQST 402

Query: 227  KGPIIIAGSTGSIPATARLMSTVAN-HPNGAIVLPGLDCHIPTAIWNTITEKSTNI---- 281
               +++     +      ++  V         +    D       +              
Sbjct: 403  FKEVMVDEYQDTNMVQEAILKLVTKESEESGKMFMVGDVKQSIYRFRLAEPFLFLSKYKR 462

Query: 282  -----------------TSSNTTYSTHPQYSLAKLLDF--LDIKREDVKRLGNVSNEMYG 322
                               S         +   +++     +I  +D   L   +     
Sbjct: 463  FDTDAKESGLRIDLNKNFRSRPEVLDATNFIFKQIMGETVGEIDYDDDAELKFGAAYYPE 522

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
             +   S+  L   +S +   D   ++  +    F  V L  A   + EA  IA  ++  +
Sbjct: 523  AADRESELLLLNRSSSVAGEDEELSESEDNTTGFDKVELETA---QVEAKMIAQKIKQLI 579

Query: 383  DENK---------------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
                               +   ++      A +   E  + G+ +  +           
Sbjct: 580  QSGYEIFDKDRKVMRPVTNRDFVILMRSMPWAPQFMEEFKQEGLPLYANLSTGYFEATEV 639

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            +IL SLL  I      + +A++++ P+      +    R +                  D
Sbjct: 640  AILLSLLKIIDNPYQDVPLASVLRSPIVGLDSNDLATIRIQQKRGSYYEALMAFMEKAPD 699

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                       +     +  W++   E      +  +         +      K      
Sbjct: 700  SLEEQELAKRVRLFYQMLQSWRTAAREGALSELIWQIYQDTHFFDFVGGMPGGKQRQANL 759

Query: 548  LSISDWTKL--------TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
             ++ D  +             L+ +   + R          G+    +    I +   ++
Sbjct: 760  RALYDRARQYESTSFRGLFRFLRFIERMQERGEDLGAARALGEQEDVVRLMTIHSSKGLE 819

Query: 600  ANAIEWIDIITR----------LIDGETVKPKIEKSSTLFILGTLESRL----------- 638
               +    +  +          L+D E        ++ L I      +L           
Sbjct: 820  FPVVFVAGLSRQFNMMDLNNSYLLDKELGFGSKYVNAKLRITYPTILQLALKRKAKAQLI 879

Query: 639  ---LNFDTLILGGLNEGVWPKNTAKNP------FLSRVMQSDLNLKTAEKYIGQAAHDFE 689
               +    + L    E ++   T K+       +   V   +  L    +   ++  D+ 
Sbjct: 880  AEEMRVLYVALTRAKEKLYLVGTVKDFEKSQLLWSEHVSHENWLLPDYVRAGAKSYMDWV 939

Query: 690  --MANGTRHLIYTRSLRENNIPTI------ASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                   +     R                 S  +    V       +  K+     L+ 
Sbjct: 940  GPALVRHKDAEVLRGDSLAGTKQEDIANHPTSWKISVTNVEQLLQGIEAEKEAENLLLEK 999

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------SFSEIKQLIN--DPYAV-----Y 786
             ++ +    +  YK         + P           S SEIK++    DPYA       
Sbjct: 1000 VKRGEQVDIESPYKARVAEQLTWSYPYKEASIHRSKQSVSEIKRMREQQDPYADNTLVQT 1059

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
             RR          KK    ++ GT  H ++  L    I  +   +   + +++       
Sbjct: 1060 ERRYFLDRPAFLQKKKLSPSEIGTAMHAVMQNLDLSAITIDRDYVQSQVMEMVQKELITA 1119

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK-----------MAIESIG 895
                 ID      F  I   F     K     E +   +P             M ++   
Sbjct: 1120 EQANVID------FDAIVSFFTTPVGKRMQQAEHVHREVPFSFALQENEFFEQMDLKEET 1173

Query: 896  IHLTGFADRIDLLKSGFVDITDYK----TGDNPKKETAQKL-----IDPQLSLEAAALK 945
            I + G  D +   + G + + DYK    TG         +         Q++L A A++
Sbjct: 1174 ILVQGVIDCLLEDEEG-LVLIDYKTDTITGRFSNGFEEAEPVLRNRYKDQVALYARAVE 1231


>gi|89901806|ref|YP_524277.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
 gi|89346543|gb|ABD70746.1| ATP-dependent DNA helicase UvrD [Rhodoferax ferrireducens T118]
          Length = 814

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/557 (9%), Positives = 121/557 (21%), Gaps = 64/557 (11%)

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATAR 244
              + + ++             +       ++       +     I+I     +      
Sbjct: 192 EIYQLYEDQCQREGVVDFGELMLRSYEVLRDNDPIREHYQRRFRHILIDEFQDTNKLQYA 251

Query: 245 LMSTVAN-----------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
            +  +A                  VL   D       +      +               
Sbjct: 252 WIKMLAGTGAHSTADDASFNPTGCVLAVGDDDQSIYAFRGARVGNMADFVREFKV----- 306

Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                                    ++       S      +     NT  L   +   Q
Sbjct: 307 ---------------------KHQIKLEENFRSGSNILDSANELISYNTKRLGKNLRTAQ 345

Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGI 411
                V + EA ++  EA  +   +R  + E   +K+ A++      +R ++  L   GI
Sbjct: 346 GPGEPVRVFEATSDFAEAQWMVEEMRQLVREGMERKEVAVLYRSNAQSRVIETALFNAGI 405

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              +  G+            + L  +    D  +    V  P    G       +     
Sbjct: 406 PYKVYGGLRFFERAEIKNALAYLRLLENPRDDTSFLRAVNFPPRGIGLRSLEQLQDVARA 465

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
              +L    +        ++                 +     E       L+ H     
Sbjct: 466 SGCSLSDAVSGLGGKAGANIGAFLAGIDVLREQTSGMKLSEIVERVLEHSGLIQHYKADR 525

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
                 +  +       S     +        + +DE           +G  LS      
Sbjct: 526 EGADRVENLEELVNAAESFVS-LENFGRDAAALPVDEQGHALTQSPASQGLDLSQPVLDE 584

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                            ++                 + ++    S+ L FD + + G+ E
Sbjct: 585 PVPDLETGETQSPLAAFLSHAALEAGDNQAQAGQDAIQLMTVHSSKGLEFDCVFITGIEE 644

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL----REN 706
           G++P   +              +   +    +    +      R  L  + S        
Sbjct: 645 GLFPHENS--------------MSDRDGLEEERRLMYVAITRARKRLYLSHSQTRMLHGQ 690

Query: 707 NIPTIASRWLQRLLVLG 723
                 SR+   L    
Sbjct: 691 TRYNPKSRFFDELPEAA 707


>gi|325479832|gb|EGC82917.1| putative ATP-dependent nuclease subunit B [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 1122

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 26/171 (15%)

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            SEI++    PY  +      L        D D  + G + H ++ ++ K   + +   I
Sbjct: 773 VSEIERYSRCPYQYFVNY--GLRPNIEDSYDVDHLEVGNIVHKLLEDISKVLKDTDIEII 830

Query: 832 NHL-MKQIIDS--HFEKENLPPHIDIIWRHLFHKISHSFLEH---------EEKIQSSIE 879
           +   +++I+        E        +       I ++ L+          ++  +   E
Sbjct: 831 DPKNLEEILIENFRLATEKNLDQTRRVD-PRNKFILNNILKSGKRNTDKLIDQVKKGDFE 889

Query: 880 KIFVNIPA---------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
              V             ++ I+     L G  DRID     FV I DYKTG
Sbjct: 890 VYAVEKDFGYKNRESLPEVYIDGENY-LRGRIDRIDKSGD-FVRIIDYKTG 938


>gi|295396697|ref|ZP_06806843.1| ATP-dependent DNA helicase PcrA [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294970443|gb|EFG46372.1| ATP-dependent DNA helicase PcrA [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 769

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 77/699 (11%), Positives = 180/699 (25%), Gaps = 124/699 (17%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A +E+      + G+++  +  I +           +     +      
Sbjct: 77  GQILAITFTNKAAREMLDRVTSLVGERARGM-WISTFHSACVRILRREARDRTSNFSIYD 135

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
               L    RLI     +L    K   P++                 L + I  ++ E  
Sbjct: 136 AQDSL----RLITQVTKELDLDPKKFAPKT-----------------LRNRISNLKNECV 174

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----A 219
              +  A   E         A         + ERL   NA       +  +R        
Sbjct: 175 TASEFEATAQENN-PLEQATAR----VYSRYQERLAVANAYDFDDLIMETVRLLTHNPEI 229

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANH---PNGAIVLPGLDCHIPTAIWNTITE 276
               +     I +     + PA   L+  +A          +    D       +   T 
Sbjct: 230 ARNYRARFTHIFVDEYQDTNPAQYALIRVLAGADLPEPTGQLTVVGDADQSIYAFRGATV 289

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +                               +  +              + 
Sbjct: 290 RNIVEFEKDFP--------------------------HAQTIVLEQNYRSTQNILSAANA 323

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALIT 393
               N D  +  +   Q     V    A  E  EA  I   +   +DE        A+  
Sbjct: 324 VIRNNDDRRDKNLWTDQGSGEKVVGWVASTEHAEAQFIVDTIDELMDESDLTYGDFAVFY 383

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R ++  L R G+   +  G           + +  + +   +D + +  ++  P
Sbjct: 384 RTNAQSRAIEDALVRAGLPYKVVGGTRFYERKEIKDVLAYAHVLSNPSDDVNLRRILNVP 443

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G   +    A    E ++                                      
Sbjct: 444 KRGIGDRGEAFIAALANRERISFY------------------------------------ 467

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            +    A        + + PL T+    +        +  +++    ++     +     
Sbjct: 468 -DALLRAEEAPGMTKRTLGPLQTFAKLLSDLLEASQGAQPSRVLEAIMEQTGYLDGLNRS 526

Query: 574 NLWFEEEGKTLSSLFSKIIETG--SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
               +E      +    + E    +  +A   ++++ ++   D ++V     ++  + ++
Sbjct: 527 TDPQDESRVDNLAELVAVAEDFQHTQPEATLNDFLERVSLTADADSV--PDSQAGEITLM 584

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + L GL +G +P   +                +A +   +    +   
Sbjct: 585 TLHTAKGLEFPVVFLTGLEDGTFPHQRS--------------FTSATELAEERRLAYVGL 630

Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGT 725
                 ++     TRS+   +     SR+LQ +      
Sbjct: 631 TRAMQRLFLSRSETRSMWGQSSYNPPSRFLQEIPEELID 669


>gi|259507108|ref|ZP_05750008.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314]
 gi|259165386|gb|EEW49940.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314]
          Length = 824

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 89/734 (12%), Positives = 205/734 (27%), Gaps = 88/734 (11%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +    RY  ++P     +     T +A  E+R    ++ G  +  +  + +  
Sbjct: 73  TAVLTRRIAYLMRYRGVHPQ---QILAITFTNKAAAEMRERVADLVGPVAQRM-WVATFH 128

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            V                         + + R        L         +    L    
Sbjct: 129 SVC------------------------VRILRQQAQLVQGLNTNFTIYDSDDSRRLLTMI 164

Query: 143 ANAIWL------AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
           A  + L      A+ L+  I  ++ E     +  A     +  +  + A         + 
Sbjct: 165 AKDLELDIKKFSARTLSSAISNLKNELISPSEALADAERTHNPFETVVAR----VYVEYQ 220

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVAN 251
           +RL   NA         ++R   EH       +     ++I     +  A  +L++ +  
Sbjct: 221 QRLRRANAVDFDDLIGEVVRIFTEHPQVAEHYRRRFRHVLIDEYQDTNHAQYQLIAILVG 280

Query: 252 HP--NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
            P  + + +    D       +   T ++      + T +             L+     
Sbjct: 281 RPDQDPSELCVVGDSDQSIYAFRGATIRNIEEFERDFTDARTIL---------LEQNYRS 331

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            + + + +N +  ++       L     +                    +    ADNE +
Sbjct: 332 TQTILSAANAVISQNENRRPKNLWTALGEG-----------------EKIIGYVADNEHD 374

Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
           EA  IA  +    D   +    A++    N +R ++    R G+   +  G         
Sbjct: 375 EARFIASEIDELADRGLSYSDMAIMYRTNNSSRALEEVFIRTGVPYKVVGGTKFYERKEI 434

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             + + L  +   +D + +  ++  P  +          A +A       G         
Sbjct: 435 RDVIAYLRVLENPDDTVNLRRIINTP-KRGIGDRAQAFVALHAENNRISFGQALVDAAAG 493

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
              L+  R        +      R         V  +  I Q I+ ++     K     +
Sbjct: 494 NVELLGGRGRNAVGKFNELMDTLRGELLSMVNEVTGMPDIGQVISRILDITGYKAELEAS 553

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
               D  +L    L  +         +        T+     ++ ++      +   +++
Sbjct: 554 NDPQDGARL--DNLNELVSVAREFSSDAANRMAYDTMDGSEPELDDSEPA-PGSLQAFLE 610

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            ++ + D + +     +   + ++    ++ L F  + L G  +G +P   +        
Sbjct: 611 RVSLVADADQI--PDNEQGLVTLMTLHTAKGLEFPVVFLTGWEDGQFPHLRSLGDAKELA 668

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
            +  L      +   +      M          RS   N +   ASR+LQ +        
Sbjct: 669 EERRLAYVGITRARQRLYVTRAML---------RSSWGNPVTNPASRFLQEVPEGLIDWR 719

Query: 728 FDNLKKRGQCYLDW 741
            +            
Sbjct: 720 REEPANSFGSAWAP 733


>gi|297560441|ref|YP_003679415.1| hypothetical protein Ndas_1478 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844889|gb|ADH66909.1| conserved hypothetical protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 273

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 70/237 (29%), Gaps = 22/237 (9%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
             S S     +  P     R I +L              RGTL H  +  L +       
Sbjct: 9   ALSPSRASDFLQCPLLFRFRTIDRLPE-----APSAAALRGTLVHACLERLYELPAESRN 63

Query: 829 PEINHLM-------KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
           P     +        +      ++          W      +   + + E    +++E  
Sbjct: 64  PRNAVGLVEPQWKKLREKKPELDELFADDAERDTWLESARDLVRRYFDLEN--PTALEPR 121

Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
              +  ++++   G+ L G+ DRID   SG + I DYKTG +P      K    Q+   A
Sbjct: 122 DREMRLEVSLP-TGLRLRGYVDRIDATPSGQIRIVDYKTGKSPAPRFEDKAR-FQIFFYA 179

Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI-TNDKKKYSADELSEKSLKNLIEI 997
             +               L  + L     +      + +  +A+         +   
Sbjct: 180 VMIWRDL-----GVVPTRLQLVYLGGDGAVRWYDPTEDELRAAESEIADIWARIEAA 231


>gi|254506756|ref|ZP_05118896.1| exodeoxyribonuclease V, gamma subunit [Vibrio parahaemolyticus 16]
 gi|219550337|gb|EED27322.1| exodeoxyribonuclease V, gamma subunit [Vibrio parahaemolyticus 16]
          Length = 1148

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 111/912 (12%), Positives = 231/912 (25%), Gaps = 127/912 (13%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+ E  +  G  + I      L          ++L         +   
Sbjct: 34  QILVQSPGMSQWLKMELAKEFGVAANIE---FPLPATFIWNMFTEVLPDVPKRSAFNKEA 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE---- 163
              +L R++           +       L      +    L++ +ADI D          
Sbjct: 91  MTWKLMRILPDMLA----QAEFEPLRRYLDKDQDSSKLYQLSEKIADIFDGYLVYRPEWI 146

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV-GYQIALMRAEAEHL 222
             WE    +   +    W             W        A      ++  L     + L
Sbjct: 147 ASWEAGQPVLELEEEHPWQPIL---------WQALYDHTIALDQSPYHRANLYEHFIDTL 197

Query: 223 MK------GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN---- 272
                        + + G T   P     +  +  H +  ++      +    + +    
Sbjct: 198 ENYNGDFSHLPKRLFVFGITSLPPRYMDALKAIGEHIDVHLMFTNPCRYYWGEVRDRKYL 257

Query: 273 ---------------------TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                                  + +       N     H       LL  +     D  
Sbjct: 258 ARLAAKHRKHLVWKENHSELEGESAQLKGGIDDNLDDELHTDVVGNSLLASMGKLGRDNM 317

Query: 312 RLGNVSNEMY-------GRSMVISKSFLPPDTSDMRNTDILENKIPNIQ---KCFSDVAL 361
            L +              R  ++ +        +    D       + Q      + V+L
Sbjct: 318 YLLSQLESNEIEAFVDVERDSLLHQLQADILNLEEHQDDEQLETSQHKQVVIGGDNSVSL 377

Query: 362 IEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGIN 412
               +   E   +   L    D +     +   ++ AD N        +         I 
Sbjct: 378 HACHSPMREVEVLHDQLLGMFDADPTLKPRDIIVMVADINAYSPAIQAVFGNAPGERFIP 437

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNA 470
             IS       +   +    L+N          +  L++ P  LA+FG  E    +AK  
Sbjct: 438 YSISDRTADQESPILNAFMQLVNLPNTRCLASELLELLETPAILARFGLTEDDFIQAKQW 497

Query: 471 LELVALRGNKNSYDIMDLK--------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
           +E   +R   N     + +                               +         
Sbjct: 498 VEESGIRWGLNRATGREFELPDTQQNTWQFGIERMLLGYAMPESAGLFNGANGALAPYNE 557

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
           +     +    L  +     +    LS++         L ++  D       L  E   K
Sbjct: 558 VQGMGAELAGKLAHFIQCIEAYRAQLSLTQSIDAWRETLTHLLDDF--FSVELEGEVALK 615

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS---STLFILGTLESRLL 639
           ++    S + E  S           +IT+ +  +    ++ +      +     +  R +
Sbjct: 616 SIRDTLSALKEQLSDAAFEQDLTPSVITQYLQNKLSGTRVSQRFLAGQVNFCTLMPMRSI 675

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
            F T+ L G+N+GV+P++     F     ++    ++             M +  + L  
Sbjct: 676 PFRTVCLLGMNDGVYPRSMPPEGFDLMTGRAKPGDRSRRDDDRYL-FLEAMLSAQQTLYI 734

Query: 700 TRSLRE--NNIPTIASRWLQRLLV------LGGTDFFDNLKKRGQCYLD----------- 740
           +   R   +N   + S  +  LL           D      + G   L            
Sbjct: 735 SYVGRSIQDNTERVPSVLVSELLEYCHQNYCLEGDQALACDESGDRLLASLISHHSMVPF 794

Query: 741 -----WTRKLDYTTKQPHYK------------RPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                   +  Y  +                 + + +      P      E+++    P 
Sbjct: 795 SPTAFIGTQPSYAKEWLPAANRQGQQSGLFNRQLEDYLLDATYPLELDLVELQRFWRLPV 854

Query: 784 AVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             +  R LK+     +P  + D      G   + I   L+   +     +   +++Q I 
Sbjct: 855 QYFFNRRLKVMFEPPLPVMEDDEPFVLGGLESYQIRDSLLAALLEP-QQDSQTVIEQFIA 913

Query: 841 SHFEKENLPPHI 852
           +   +  LP   
Sbjct: 914 TQRAQGKLPVGA 925


>gi|218896177|ref|YP_002444588.1| ATP-dependent nuclease, subunit A [Bacillus cereus G9842]
 gi|251764501|sp|B7IL84|ADDA_BACC2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|218544151|gb|ACK96545.1| ATP-dependent nuclease, subunit A [Bacillus cereus G9842]
          Length = 1241

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 96/893 (10%), Positives = 215/893 (24%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  AFQYRNKFTEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      +    RA            +     +    L  ++ 
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEDLATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 693

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
              +K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 694  LHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 753

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 754  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 813

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 814  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 873

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 874  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 933

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             R       L + +IP     +     V    G         + +         +     
Sbjct: 934  HRDSEMLLELGQGSIPDEIYGYDTNWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 993

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 994  LQSERKEEVYDRLMWKYGYEDATSYRAKQSVTEIKRNYQSEEGSDNAFIKKLRTPIKTRP 1053

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 1054 RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1106

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------IHLTGFAD 903
                  K+   F     K   + + +   +P  M + +              I + G  D
Sbjct: 1107 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETILVQGVID 1166

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1167 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1218


>gi|29840740|ref|NP_829846.1| ATP-dependent helicase PcrA [Chlamydophila caviae GPIC]
 gi|29835090|gb|AAP05724.1| ATP-dependent helicase PcrA [Chlamydophila caviae GPIC]
          Length = 637

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 80/687 (11%), Positives = 179/687 (26%), Gaps = 118/687 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKK-STILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            +     T +A +EL+   +    +   + +P++ +   +                    
Sbjct: 51  EILAVTFTNKAAKELKERILHQCPQAHGSDVPMVCTFHSLG------------------- 91

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETE 162
               +  L R I     +   II D      L         +   L+ ++   I   +  
Sbjct: 92  ----VFILRRSIHALNRENNFIIYDQSDTDKLLKQCLQKFNLKKTLSSSIQYHISQAKNR 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA----- 217
               EDL     E+Y    +          K + +RL E NA          ++      
Sbjct: 148 LLYPEDL---DPEEYIDPVVS-------IYKEYQQRLNETNALDFDDLLFLTVKLFKEFP 197

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           E           ++I     +  A   +  T+A       +    D       W      
Sbjct: 198 EIRKEYSELWKALLIDEYQDTNHAQYMMAQTIAGKH--HNIFAVGDPDQSIYSWRGANIH 255

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P+  + +L                                   +  
Sbjct: 256 NILNFEK-----DYPRALVLRL---------------------EDNYRSYGNILNAANAL 289

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI---ALRMSLDENKKKSALITA 394
              N   L+  + +++     + +     ++EEA  +A     L    +   +   +   
Sbjct: 290 IQNNVSRLKKDLRSVKGPGEKIRVFLGKTDKEEAEFVAEEIYRLHKRANICLRDICIFYR 349

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R  +  L R  I  +I  G+          + + L       D +A    V  P 
Sbjct: 350 TNFQSRTFEDALLRRRIPYEILGGLSFYKRKEIQDILAFLRMFSAKCDVVAFDRTVNLP- 408

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                    K       + SL+   +      T+          
Sbjct: 409 -------------------------KRGLGPTAISSLIDYAL------TNNLPMLEACKN 437

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             +  AV L     + +   ++           LS++++   T+     + + +      
Sbjct: 438 ALETQAVKLSKKQQEGLRCYLSIFQQLEHAYETLSLNEFVVATIRITGYLQVLKEDPDTF 497

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
              +     L+S   +  +  +            +  L    +       +  + ++   
Sbjct: 498 EDRKSNLDELASKTFEWEQQNTEGSLE-----SFLDDLALKSSTDDSELIADRVNLMTIH 552

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
             + L F    L GL E ++P   +K  + +   +  L      +     A D       
Sbjct: 553 NGKGLEFRIAFLVGLEENLFPHANSKGNYENLEEERRLCYVGITR-----AQDLLYLTAA 607

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLV 721
           +      ++R        SR+L+ +  
Sbjct: 608 QTRFLWGTVRVMK----PSRFLKEIPR 630


>gi|325694960|gb|EGD36865.1| exonuclease RexA [Streptococcus sanguinis SK150]
          Length = 1224

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 90/854 (10%), Positives = 206/854 (24%), Gaps = 107/854 (12%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGST 236
             L  DF+   ++ + ER    NA          +             +     +++    
Sbjct: 366  ELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILERFPEVRRFYQERYHEVMVDEYQ 425

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS- 295
             +      ++  ++    G       D       +     +  +            Q   
Sbjct: 426  DTNHTQECMLDLLSR---GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKL 481

Query: 296  ------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN-- 347
                      L+ L+   +  KRL +        +         P   +    +      
Sbjct: 482  IVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKREPNLANRASFLI 541

Query: 348  -KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK 403
             +             +       E   +   +    +E+    K   L+TA R     + 
Sbjct: 542  YEGSKESPEEEGDEGLPQAVSAGEVDLVIKEIIRLHNEDGVAFKDITLLTASRTRNDLIL 601

Query: 404  LELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                +  I +    G      ++   ++   L  I    +  A+  L+K P+  FG  E 
Sbjct: 602  ASFEQHQIPLVPDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDEL 661

Query: 463  YLSRAKNALEL---VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                 + + E           N+ +   L   ++ +   +K        QS  +      
Sbjct: 662  ARLSLQASQERSQENLYEKLLNALEGRGLNPTLVTQKLQKKLQHFHETLQSWRTYSKTHS 721

Query: 520  AVLLVDHI---LQCITPLVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNL 575
               L+  I         + T            ++S    +   +  + +          L
Sbjct: 722  LYDLIWKIYQDRFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRIL 781

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              + +    S   +   +    +  +  + ++     +         + SS+  IL    
Sbjct: 782  ENQHDL--ASVPVAAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTN 839

Query: 636  SRL--LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
                    D  +             + +    +   ++L L +  + +         A  
Sbjct: 840  GVGIKYVADVSVSVEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAET 899

Query: 694  TRHLI--------------------YTRSLRENNIPTIASRW-----------LQRLLVL 722
              +L+                     + SLR          +                 +
Sbjct: 900  KLYLVGKGSQEALDKRQWGKSQQGRLSVSLRSQLSNFQDWLYAIQAVFSDENLAYETRFV 959

Query: 723  GGTDFFDNLKKR-GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-IN 780
               +       R  +  L     L    +    +R         +  +   S I+   + 
Sbjct: 960  TDEELTSEEIGRINEPVLFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVR 1019

Query: 781  DPYAV--YARRILKLDFIPHFKKDPDRT-------------------DRGTLFHNIITEL 819
             P  +  +   I+  D +    +                          G+  H ++  +
Sbjct: 1020 TPSQIKKFYELIMDTDGLDIMDERAAFRPQPNFDLPDFGKKAKVTGAQVGSAVHELMQRI 1079

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                        + L +   D   +K+   P I   +     ++             + +
Sbjct: 1080 PLDSSPSMAVLRSALAQVQADEAVKKQIQLPKISSFFETDLGRLL----------IENSD 1129

Query: 880  KIFVNIPAKM----AIESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
            ++    P  M     I      L G  D   +       + + DYKT             
Sbjct: 1130 RVRREAPFAMLKRDEISGQEFVLRGILDGYLLFED---RIILFDYKTDKYKDSSELIARY 1186

Query: 934  DPQLSLEAAALKAG 947
              QL L A AL   
Sbjct: 1187 CGQLDLYAQALSRS 1200


>gi|228984311|ref|ZP_04144492.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar tochigiensis BGSC 4Y1]
 gi|228775428|gb|EEM23813.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar tochigiensis BGSC 4Y1]
          Length = 1166

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 98/899 (10%), Positives = 211/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQTMKRDKGMVDFTDLEHFCLQVLSEQSENGEMKPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 612

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 613  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 672

Query: 548  LSISDWTKL--------TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              + D  +             L+ +     R          G+    +    I     ++
Sbjct: 673  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 732

Query: 600  ANAIEWIDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL- 638
               +    +                              + K    S L I   ++  L 
Sbjct: 733  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 792

Query: 639  ---LNFDTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
               +    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 793  AEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWI 852

Query: 690  M--ANGTRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKL 745
                   R       L + +IP     +     V    G         + +         
Sbjct: 853  APSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 912

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARR 789
            +        +R +           Y          S +EIK+        ++ +    R 
Sbjct: 913  EKKAVPLQSERKEEVYDRLMWKYGYEEATAHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 972

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 973  PIRTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITIEVLQEQIAGMVNKELL- 1026

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1027 -TFEQAEEIAIEKVISFFESDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1085

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1086 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKS 1143


>gi|126741390|ref|ZP_01757064.1| DNA helicase II, putative [Roseobacter sp. SK209-2-6]
 gi|126717526|gb|EBA14254.1| DNA helicase II, putative [Roseobacter sp. SK209-2-6]
          Length = 794

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 81/694 (11%), Positives = 178/694 (25%), Gaps = 126/694 (18%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E++     + G+ +  +P + +   +                  V  
Sbjct: 77  EILAVTFTNKAAREMKERVGGMLGQPAEGMPWLGTFHSIC-----------------VKL 119

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  ELA L   +     D    L  +  L       +  W A+ LA+IID  +     
Sbjct: 120 LRRHAELAGLKSNFTILDTDDQIRLLKQ--LIKAEGIDDKRWPARMLANIIDDWKNRALT 177

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            + L A     Y                 +  RL ELNA       + ++    EH    
Sbjct: 178 PDRLPAADAGAYNHR-------GTALYAQYQTRLKELNAVDFGDLLLHMVTIFQEHSDIL 230

Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
            +       I++     +  A    +  +A        +   D       W      +  
Sbjct: 231 LQYQRWFRFIMVDEYQDTNIAQYLWLRLLAGGHRNICCV--GDDDQSIYGWRGAEVGNIL 288

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +      P   + +L          +    NV     GR                 
Sbjct: 289 RFEKDF-----PGAKVVRLEQNYRSTEHILAAASNVIRGNAGR----------------- 326

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------RMSLDENKKKSALIT 393
               L  ++    K    V LI   +  EEA  I   +       R     +  + A++ 
Sbjct: 327 ----LGKELWTAAKGGEKVRLIGHWDGEEEARWIGEEIESMQRGTRGQRPVDLNEMAILV 382

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              +  R  +      G+   +  G      L      +    +    D +A   +V  P
Sbjct: 383 RASHQMRAFEDRFLTIGLPYRVIGGPRFYERLEIRDAMAYFRLVVSPEDDLAFERIVNTP 442

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G   +   +                          +  +   +        + +  
Sbjct: 443 KRGLGDKAQQKIQLMARSNG-------------------ISLLEGARLAVESGEIKGKGG 483

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
              ++    +           +++                   +                
Sbjct: 484 TALRQFVEDIARWGRMTGDADISHMELAEI---------ILDESGYTTMWQLDKNPDSPG 534

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            L   +E       F  +             +++ ++ ++D +      +    + I+  
Sbjct: 535 RLENLKELVKALENFENL-----------QGFLEHVSLVMDNDK----QDAEQKVSIMTL 579

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + L G  +G++P   + +         +  LK  E+    A   +     
Sbjct: 580 HAAKGLEFPAVFLPGWEDGLFPSQRSMD---------ESGLKGLEEERRLA---YVGITR 627

Query: 694 TRHL-IYTRSLRENN----IPTIASRWLQRLLVL 722
              +   + +            + SR++  L   
Sbjct: 628 AEEICTISFAGNRRVFGQWQSQLPSRFVDELPEA 661


>gi|254819651|ref|ZP_05224652.1| RecB family protein exonuclease [Mycobacterium intracellulare ATCC
           13950]
          Length = 298

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 74/255 (29%), Gaps = 21/255 (8%)

Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
           QP   +    P  +      S S        P     R I +L              RG+
Sbjct: 4   QPEAPQSVTGPARQVSRPALSPSRAADFKQCPLLYRFRAIDRLPE-----APSPAQLRGS 58

Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE------NLPPHIDIIWRHLFHKIS 864
           L H  + +L +    +  P+    + Q                L P            + 
Sbjct: 59  LVHAALQQLYELPAAQRGPDTALSLVQPAWEQVMAATPEMTAGLDPAQRSQLLAEAQALL 118

Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924
             +  +  +  +  +        ++ +    + L GF DRID+  +G + + DYKTG  P
Sbjct: 119 AGY--YRLEDPTRFDPQCCEERVEVELADGTL-LRGFIDRIDVAATGELRVVDYKTGKAP 175

Query: 925 KKETAQKLID--PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +  A        Q+   A AL               L  I L     +D   +  +   
Sbjct: 176 PEARALAEFKAMFQMKFYAVALLRS-----RGVPPTRLRLIYLADGQVLDYSPDHDELLR 230

Query: 983 ADELSEKSLKNLIEI 997
            ++      + +   
Sbjct: 231 FEKTLIAIWRAIQSA 245


>gi|228938359|ref|ZP_04100970.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar berliner ATCC 10792]
 gi|228971238|ref|ZP_04131867.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar thuringiensis str. T01001]
 gi|228977847|ref|ZP_04138229.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis Bt407]
 gi|228781865|gb|EEM30061.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis Bt407]
 gi|228788473|gb|EEM36423.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar thuringiensis str. T01001]
 gi|228821305|gb|EEM67319.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar berliner ATCC 10792]
          Length = 1166

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 96/893 (10%), Positives = 213/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYSTH-------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGSGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      +    RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEDLATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 858

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             R       L + +IP     +     V    G         + +         +     
Sbjct: 859  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 918

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 919  LQSERKEEVYDRLLWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRVPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P     +++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITAETLQEQIAGMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------IHLTGFAD 903
                  K+   F     K   + + +   +P  M + +              I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|78043588|ref|YP_360999.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901]
 gi|123575608|sp|Q3AA35|ADDA_CARHZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|77995703|gb|ABB14602.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901]
          Length = 1167

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 104/892 (11%), Positives = 224/892 (25%), Gaps = 171/892 (19%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAE---HLMKGTKGPIIIAGSTGSIPAT 242
              ++  S+ + E   +   +     +   +          ++     I++          
Sbjct: 335  KLVREFSRKYQEEKRKHGFADFSDLEHWALDILKSGVYRELREKYVEILVDEYQDINGLQ 394

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST------HPQYSL 296
              +++ V+   +G  +    D       +     +       + T         + +   
Sbjct: 395  EEILTYVSR--DGQNLFMVGDVKQSIYRFRWARPEIFLKKYEDFTDEKKIELSLNFRSRE 452

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              +     I ++ +K+     +      +     +LP          I      +I    
Sbjct: 453  EIIATVNFIFKQIMKKRVAELSYDEKAFLKKGADYLPNANCFAELHLIEGKPEEDINSNG 512

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL------------ 404
                 + A +   EA  +A  +    +E  K   +   +    R ++             
Sbjct: 513  EPEEDLTAVHR--EARLVAAKILKLKEEGFK---VFDRETKEFRPLQYRDIVILSRSLSN 567

Query: 405  -------ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
                   ELTR GI + +        +    ++TS L  I      + +A ++  P+A  
Sbjct: 568  SSNIWQEELTRAGIPVYVEGAGSFLNSKEILLMTSFLKVIDNPCQDVPLAAVLCSPVAGL 627

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
             + E +                                   Q    +         +   
Sbjct: 628  TYEELW-----------------------------------QVRKEYPEGLLYDALKNKS 652

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                 L     + +  LV ++           +++  + T                    
Sbjct: 653  LGKDELSVKSQKFLELLVEFQKLSRQISLAELVNEIYRKTNLPEIFGAYPGGEVR----- 707

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            +   K L  L     E       N + ++       D    K   E    + ++   +S+
Sbjct: 708  QANLKLLHDLAVDFAEINGGGIYNFLTFLSQAAESEDFSPAKLIGEADDVVRVMSVHKSK 767

Query: 638  LLNFDTLILGGLNEGVWPKNTA-----------KNPFLSRVMQSDLNLKT--------AE 678
             L F  + + GL +      +               F         ++ +         E
Sbjct: 768  GLEFPVVFVVGLGKRFKFDYSNTVFLHSDLGFGPKFFDPEKRIRRHSIASQILSERMRRE 827

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                +    +      R  +      +N    +A    Q           D    R   +
Sbjct: 828  TLAEEMRILYVALTRAREKLILVGTVKNLAKKMA--GWQSQTEALKDTLSDGQIARAGNF 885

Query: 739  LDW------TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
            LDW          D          P+       Q        +K L   P+        +
Sbjct: 886  LDWIGPVVFREGSDLPDCLKVEVHPQQEKIEGEQWELPEVLRVKLLTKTPFTEETDYTGQ 945

Query: 793  LDFIPHFKKD-----------------------------------------PDRTDRGTL 811
                  F                                             D    G +
Sbjct: 946  FRAGLEFNYPGLKIAKLPAKMSVSDLKEVFSTDDVISLEDEDEVFLPGVYFEDGAMLGIV 1005

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
            +H  +  +     +         +K   ++   +  LPP    +    F KI+  F    
Sbjct: 1006 YHEFLRRI-----DFQGDLSASGLKAQGETLVAEGVLPPESREML--DFTKIARIFATPL 1058

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGI-----------HLTGFADRIDLLKSGFVDITDYKT 920
             +      +I+   P  + +++  I            + G  D + L + G   I D+KT
Sbjct: 1059 GQRILRAREIYPEFPFTLGVKAGEIYPEATGFSEKILVRGVIDLLALEEDG-FFIVDWKT 1117

Query: 921  GDNPKK--ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN--LFYIRLKQK 968
                        K    QL+L A A++      I  +KV    L++I L+++
Sbjct: 1118 DRVTGDILNERLKEYAGQLNLYARAVEE-----ITGKKVKEKYLYFINLEKE 1164


>gi|223041651|ref|ZP_03611848.1| DNA helicase II [Actinobacillus minor 202]
 gi|223017515|gb|EEF15929.1| DNA helicase II [Actinobacillus minor 202]
          Length = 731

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 69/699 (9%), Positives = 176/699 (25%), Gaps = 123/699 (17%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK--SLGDVVEEKFTADLLLSYNLNPP 102
           +++     T +A  E+R        + S  +  +   +   +      +  L +      
Sbjct: 55  SNILAVTFTNKAAAEMRQRIEATLEQSSHNMFGMWVGTFHSIANRLLRSHYLDA------ 108

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
             N+ +  ++       +  L  ++K    +     P   A  I   K+L          
Sbjct: 109 --NLPQDFQIMD-TEDQQRLLKRLLKLHNVDEKHFPPKQVAWYINSQKDL---------- 155

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA----- 217
            K+ +D+     E +          L    + + +              I          
Sbjct: 156 GKRPKDI-----EHFNDHNEKK---LVEIYQLYQDACDRAGLLDFAELLIRTYEMLKNQP 207

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I+I     +      L+  +A      +++   D       W     +
Sbjct: 208 LILQRYQQRFQHILIDEFQDTNNIQYDLIHLLAGQHGKVMIV--GDDDQSIYGWRGAQVE 265

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            + Q    +L                                   +  
Sbjct: 266 NIQRFLK-----DYDQAQTIRL---------------------EQNYRSTGHILASANEL 299

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITAD 395
              N + L  K+         V +  A NE +EA  +A  ++   ++     + A++   
Sbjct: 300 IANNDNRLGKKLWTESGDGDPVEIYCAFNELDEARFVASQIQQWKEDEGSFSECAVLYRS 359

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            + +R ++  L +  I   I  G+            + L  I    D  A   ++  P  
Sbjct: 360 NSQSRVIEEALIQANIPYRIYGGMRFFERQEIKDALAYLRLISNRQDDAAFERVINTP-- 417

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                                            + +    + T +  T         + +
Sbjct: 418 --------------------------------PRGIGERTLETIRQLTRTRSITLWQAIQ 445

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                  L       +   V      ++    +S++D T   +            ++   
Sbjct: 446 VAIQEEQLSGRAASALLRFVELINALDNETEQMSLADQTDFVIR------KSGLYEMYKQ 499

Query: 576 WFEEEGKTLSSLFSKIIET-----GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
              ++G+       +++             +       +T                 + +
Sbjct: 500 EKGDKGEVRIDNLEELVTATKQFTPPDEAEDLTPLTAFLTHASLEAGDAQASPHQDYVEL 559

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKN--PFLSRVMQSDLNLKTAEKYIGQAAHDF 688
           +    ++ L F  + + G+ EG++P   + +          + + +  A+K +  +  + 
Sbjct: 560 MTLHSAKGLEFPRVFIVGVEEGIFPSGMSHDEGRLQEERRLAYVGITRAKKKLTISYAEL 619

Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
               G                   SR++  L      + 
Sbjct: 620 RRLYGKEERHI------------PSRFIAELPEEHIREI 646


>gi|328946442|gb|EGG40582.1| exonuclease RexA [Streptococcus sanguinis SK1087]
          Length = 1224

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 89/854 (10%), Positives = 210/854 (24%), Gaps = 107/854 (12%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGST 236
             L  DF+   ++ + ER    NA          +             +     +++    
Sbjct: 366  ELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILETFPEVRRFYQERYHEVMVDEYQ 425

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS- 295
             +      ++  ++    G       D       +     +  +            Q   
Sbjct: 426  DTNHTQECMLDLLSR---GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKL 481

Query: 296  ------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                      L+ L+   +  KRL +        +         P   +    ++    I
Sbjct: 482  IVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKCEPNPANLASFLI 541

Query: 350  PNIQKC---FSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK 403
                K          +       E   +   +    +E     K   L+TA R     + 
Sbjct: 542  YEGSKESLEEEGDEGLPQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLIL 601

Query: 404  LELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                +  I +    G      ++   ++   L  I    +  A+  L+K P+   G  E 
Sbjct: 602  AAFEQHQIPLAPDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDLGEDEL 661

Query: 463  YLSRAKNALEL---VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                 + + E           ++     L S ++ +   +K        QS  +      
Sbjct: 662  ARLSLQASQEHSQENLYEKLVHALQGRGLNSDLVTQELQKKLQYFHETLQSWRTYSKTHS 721

Query: 520  AVLLVDHI---LQCITPLVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNL 575
               L+  I         + T            ++S    +   +  + +          L
Sbjct: 722  LYDLIWKIYQDRFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRIL 781

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              + +    S   +   +    +  +  + ++     +         + SS+  IL   +
Sbjct: 782  ENQHDL--ASVPVATPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTK 839

Query: 636  SRL--LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA-- 691
                    D  +             + +    +   ++L L +  + +         A  
Sbjct: 840  GIGIKYVADVSVSVEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAET 899

Query: 692  ------NGTRHLI------------YTRSLRENNIPTIASRWLQR------------LLV 721
                   G++ ++             + SLR          +  +              V
Sbjct: 900  KLYLVGKGSQEVLDKRQWGKSQQGRLSASLRNQLSNFQDWLYAIQAVFSDKNLAYETRFV 959

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-IN 780
                   + + +  +  L     L    +    +R         +  +   S I+   + 
Sbjct: 960  TDKELTAEEIGQIKEPVLFPADDLADNRQTDDIRRALDILESVDRFNSQYRSAIELPSVR 1019

Query: 781  DPYAV--YARRILKLDFIPHFKKDPDRT-------------------DRGTLFHNIITEL 819
             P  +  +   I+  D +    +                          G+  H ++  +
Sbjct: 1020 TPSQIKKFYEPIMDTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRI 1079

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                        + L +   D   +K+     I   +     ++             + +
Sbjct: 1080 TLDSRPSMAVLRSALAQVQADEAVKKQIQLSKIASFFETDLGRLL----------IENSD 1129

Query: 880  KIFVNIPAKM----AIESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
            ++    P  M            L G  D   +       + + DYKT    +        
Sbjct: 1130 RVRREAPFAMLKRDEASGQEFVLRGILDGYLLFED---RIILFDYKTDKYKEPSELIARY 1186

Query: 934  DPQLSLEAAALKAG 947
              QL L A AL   
Sbjct: 1187 HGQLDLYAQALSRS 1200


>gi|312139712|ref|YP_004007048.1| recb family exonuclease [Rhodococcus equi 103S]
 gi|311889051|emb|CBH48364.1| RecB family exonuclease [Rhodococcus equi 103S]
          Length = 295

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 71/240 (29%), Gaps = 22/240 (9%)

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
            +    S S        P     R I +L              +GT+ H  +  L     
Sbjct: 19  PRRLALSPSRAGDFKQCPLLYRFRAIDRLPET-----PSKAQVKGTVVHAALEALFALPA 73

Query: 825 NKNTPEINHLMKQIIDSHFEKENLP------PHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
            +   +    + +        ++        P     +     ++  ++  +  +  +  
Sbjct: 74  GERVADRAKELVEPAWDRVLADSPELAELIGPADRGQFLTDARRLIANY--YRLEDPTRF 131

Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-QL 937
           +     +  +  ++  G+ L GF DR+D+  +G V + DYKTG  P      +     Q+
Sbjct: 132 DPEACELRVETELDD-GVLLRGFVDRVDVSPTGLVRVVDYKTGRAP--WELSESKALFQM 188

Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
              A  L             A L  + L     +     + +    +       + + E 
Sbjct: 189 KFYALVLLR-----TRGVVPARLQLLYLGDGQTLTYDPVEDELLRFERTLSAIWQAISEA 243


>gi|327441307|dbj|BAK17672.1| ATP-dependent nuclease, subunit B [Solibacillus silvestris StLB046]
          Length = 1213

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 89/300 (29%), Gaps = 53/300 (17%)

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP---KPFPPLEAQPRTYSFS 773
            +R  +           +R Q + D    ++      +   P   +    L  +    S S
Sbjct: 753  ERRPLTEEWAALKAFYEREQRWKDVLNVVEKPLYTTNEAEPLTEEVATALYGEDFLASVS 812

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI-- 831
             I++  + PY+ +A   LKL     FK +      G LFH  I  ++ ++          
Sbjct: 813  RIERFYSCPYSHFASYGLKLQERTEFKLETFA--MGDLFHEAIRTILSEKDPSIPLTTYV 870

Query: 832  -----NHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFV 883
                        ++ +F    L         +    KI     +    +   S  + I  
Sbjct: 871  ACYKKADETISKLEDYFSYSILKSSHRFEYIKTKLVKIVARTIYALINQSELSKFKAIAH 930

Query: 884  NIPA-------------------KMAIES-IGIHLTGFADRIDLLKSGF---VDITDYK- 919
              P                    ++ +E    +++ G  DRID  K      + + DYK 
Sbjct: 931  EKPFGKRDDKNTEQDDRNPLEALEIDLEHNRKMYVRGQIDRIDAYKDAENLYLRVIDYKS 990

Query: 920  TGDNPKKETAQKLIDPQLSLEA--------AALKAGSFSQIDCR------KVANLFYIRL 965
            +G           I  QL               + G F Q          + A +FY+ +
Sbjct: 991  SGRKLDFTEVYNGISLQLLTYLDVAMKNIPIIAREGKFIQDLSELENIIVQAAGMFYLHV 1050


>gi|326938868|gb|AEA14764.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
            chinensis CT-43]
          Length = 1241

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 96/893 (10%), Positives = 213/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYSTH-------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGSGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      +    RA            +     +    L  ++ 
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEDLATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 693

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 694  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 753

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 754  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 813

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 814  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 873

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 874  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 933

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             R       L + +IP     +     V    G         + +         +     
Sbjct: 934  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 993

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 994  LQSERKEEVYDRLLWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRVPIKTRP 1053

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P     +++ I     KE L    +  
Sbjct: 1054 RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITAETLQEQIAGMVNKELL--TFEQA 1106

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------IHLTGFAD 903
                  K+   F     K   + + +   +P  M + +              I + G  D
Sbjct: 1107 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETILVQGVID 1166

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1167 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1218


>gi|289167933|ref|YP_003446202.1| hypothetical protein smi_1090 [Streptococcus mitis B6]
 gi|288907500|emb|CBJ22337.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 1297

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/479 (11%), Positives = 143/479 (29%), Gaps = 69/479 (14%)

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKP----KIEKSSTLFILGTLESRLLNFDTLI 645
             ++E     K    E+++ ++ L +     P        S+ + ++    S+ L FD + 
Sbjct: 532  MLMECHIHPKLTVKEFLNQLSTLEEMGISLPIEDISGSPSNCVQLMTAHGSKGLEFDHVF 591

Query: 646  LGGLNE-------GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
            +   N+           +N +        +      ++  K        +      + ++
Sbjct: 592  IMKCNDGKKKSEAWPGGENNSGRFAYPPSLNGKDENESQLKEEENRRLFYVAMTRAKKVL 651

Query: 699  -YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
              T S            ++                   Q             K    K  
Sbjct: 652  HLTYSDDSTKTH-----FINEFEEFIDEVDVTESFDDFQSV----------DKVVIPKFS 696

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
                       + S S +   +  P + Y  + LKL       +  +    G++ H ++ 
Sbjct: 697  NNVINEIFDELSLSVSTLNAFLKCPLSFYFNKGLKLP-----SETNEAMVFGSIIHEVLE 751

Query: 818  ELIKKRINKNTPEI-------NHLMKQIIDSHFEKENL---PPHIDIIWRHLFHKISHSF 867
            ++        + E+            ++ ++ FE+++       I         KI  + 
Sbjct: 752  KIYISVDGSQSSELTAKTVLSPEEALKLFETVFEEKSYQLTSDRIKKDDYARGKKIIENL 811

Query: 868  LEHEEKIQSSIEKIFVNIPA-KMAIESI-----------GIHLTGFADRIDLLKSGFVDI 915
              +++        + V +P   + +  I            I + G  D+I+   +  V +
Sbjct: 812  --YKKAGYLKDGVVAVEVPIQGIRLGDILNTTVDLSEVSDIEINGKIDKIECDGN-IVRL 868

Query: 916  TDYKTGD---------NPKKETAQKL-IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL 965
             DYKTG+          P ++         Q       L   +   I  +++  + Y+ +
Sbjct: 869  VDYKTGNFENAKKKLVAPSEKEPLGGDYWRQAVFY-YILFKNAGIDISDKEIL-VKYVLV 926

Query: 966  KQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
            +     D  +  +      +  +  L  + E +  ++ G+      +   ++ N   +Y
Sbjct: 927  ENSTNEDGFSETEDIRITQKEVDIVLNQIKESIMKIKQGDFNCGCGVLKKDRDNYPCDY 985



 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 95/296 (32%), Gaps = 33/296 (11%)

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD---------- 802
                   +       ++ S S++ + ++ P ++Y   +L+L                   
Sbjct: 1001 EALEVATYQQTRGNYKSLSVSKLNRYLSCPKSIYFEDVLQLSQAAGLSAGAKEKSTKITI 1060

Query: 803  ---PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
               P     GT  H  + ++ K+  +    +        + SH ++E +        +  
Sbjct: 1061 NHAPTGPVFGTAIHETMEKIYKE--DLQLEDAIEFYDSSLYSH-QEEIIDTMPVEELKEY 1117

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
             HK+  +  EH        E +F+    ++ +      + G  D+++      + + DYK
Sbjct: 1118 GHKLLTNLFEHYIPNSLKGEHVFLEKELRVKLGD-NYLINGIIDKLEFDND-LIRVVDYK 1175

Query: 920  TGDNPKK-ETAQKLID--PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
            TG   +  E  +   D   Q       L+  S      +++    YI L         + 
Sbjct: 1176 TGSAQRGVEELEVGHDYWRQAVFYNLLLENSSEIDTTDKRIET-QYIFLDDNSTESGYSI 1234

Query: 977  DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
               + + ++L +     +    + +   +  F              +Y    R+AE
Sbjct: 1235 HTIQVTKEDL-DLVTSQIQNFWSHMNTAD--FTGSC-----GKNVCDY---CRLAE 1279


>gi|219667567|ref|YP_002458002.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense
           DCB-2]
 gi|219537827|gb|ACL19566.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense
           DCB-2]
          Length = 755

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 84/725 (11%), Positives = 190/725 (26%), Gaps = 107/725 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVV 85
             L     +     +    +     T +A QE+R     + G   +      + +     
Sbjct: 34  RVLTYRIAHLIAQGVEPWHILAITFTNKAAQEMRDRVYSLVGSEGRGLW---VATFHSAC 90

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                +++      +          +LA LI     +L    K   P             
Sbjct: 91  VRILRSEIGYLPGYSRSFVIYDSGDQLA-LIKSCMKELNLDEKKFAPR------------ 137

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
                 +  +I   + +    ED      + +               + + ++L+  NA 
Sbjct: 138 -----AIEAVISDAKNKLLTPEDFSRRAKDYFEQKAER-------VYELYLKKLLANNAL 185

Query: 206 SPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                 +  +R   E+       +     I++     +  A   L++ +A       V+ 
Sbjct: 186 DFDDIIMLTVRLFRENPEVLSQYQDKFRYILVDEYQDTNHAQYALVNLLAKKYRNLCVV- 244

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D      ++     ++            +P+    KL       +  ++   +V    
Sbjct: 245 -GDDDQSIYMFRGADVQNILDFE-----RDYPEAKTLKLEQNYRSTKSILQAANSVVQNN 298

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
             R                      E  +    +    +    ADNE +EA  +   ++ 
Sbjct: 299 TERK---------------------EKSLWTENEDGQPIVYYVADNEHDEARYMGERIQR 337

Query: 381 SLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
            L+   +   + A++      +R ++    + GI   I +G+     +    + + L  +
Sbjct: 338 LLNVEGRKFNEFAVLYRTNAQSRVIEERFMKEGIPYRIFSGLKFYERMEIKDILAYLRIL 397

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
               D ++ + ++  P    G            LE +    N+    ++D          
Sbjct: 398 HNPADQVSFSRVLNVPKRGLGEST---------LEKILDYANEQEMPVLDAIMEADYIPE 448

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
            Q          + L +E + LA             L       N        ++     
Sbjct: 449 LQSRAKKPLLAFAHLMQELRALAAAESSVTKLVEEVLKRTGYWDNLVSDKSPEAE--ARL 506

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               + + +          +E                     A        + ++     
Sbjct: 507 ENLREFLSVTAEYDEKADNYETAVVQ-----------EGIEDALVPGLTGFLEQVSLVAQ 555

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
           +    +    + ++    ++ L F  + LGG+ E           F S     D  L   
Sbjct: 556 IDSLDQADDAVVMMTIHSAKGLEFPVVFLGGMEE---------GIFPSSRSMLDPVLLAE 606

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRE----NNIPTIASRWLQRLLV--LGGTDFFDNL 731
           E+ +   A    +      L    + +            S + Q +    L   D  D  
Sbjct: 607 ERRLCYVA----ITRARERLYLAYAQQRMLYGRTQYNRPSEFFQEIPTHVLVDRDPIDPP 662

Query: 732 KKRGQ 736
             R Q
Sbjct: 663 PTRAQ 667


>gi|228951606|ref|ZP_04113710.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar kurstaki str. T03a001]
 gi|228808067|gb|EEM54582.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar kurstaki str. T03a001]
          Length = 1166

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 97/893 (10%), Positives = 211/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KNDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLSDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 858

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLG-GTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             R       L + +IP     +     V     +     +   +   +    L      P
Sbjct: 859  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 918

Query: 753  HYKRPKPFPPLEAQPR-----------TYSFSEIKQ--LINDPYAVYARRILKL----DF 795
                 K         +             S +EIK+     D       + L+       
Sbjct: 919  LESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNAFIKKLRAPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIHLTGFAD 903
                  K+   F     K   + + +   +P  M +                I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGNSGESILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|126732963|ref|ZP_01748724.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sagittula
            stellata E-37]
 gi|126706580|gb|EBA05656.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sagittula
            stellata E-37]
          Length = 1123

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 77/818 (9%), Positives = 190/818 (23%), Gaps = 110/818 (13%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE--------HLMKGTKGPIIIAG 234
                F       + E  +                  ++        + + G    I++  
Sbjct: 325  ALTAFAARFVPAYEEAKMRRGWLDFDDLITRARDLLSDERVADWVLYRLDGGIDHILVDE 384

Query: 235  STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
            +  + P    ++  +A               +    D       +        +    + 
Sbjct: 385  AQDTSPVQWDVIERLAREFTSGEGARETRRTIFVVGDKKQSIYSFQGADPSEFDRMREHF 444

Query: 287  TYSTH----------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
                            +YS       L +  +  +           +             
Sbjct: 445  RERLMNTDAPLNAMVLEYSFRSADPILRVVDKTFEGADASGFSADQKHRAFKSGMPGRVD 504

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD------------- 383
                     +++     +           +    A  IA  +R ++D             
Sbjct: 505  LWPVVDKTRDDEDGPWHQPLD--RKGARHHTVILAQRIARFIRRTIDAGTPLPEENGHSG 562

Query: 384  -------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                          L+     L + +     +  + I  +  + +   L    + +LL+ 
Sbjct: 563  TYHARPVHAGDFLILVRRRSQLFKEIIRACKQEDLPIAGADRLKVMAELAVRDIIALLSF 622

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            +    D +++AT ++ PL      + +    +   + +      +      L   VL+ +
Sbjct: 623  LETPEDSLSLATALRSPLFGLSEQDLFTLAHRRTTKYLWPTLRDSEAHPAVLA--VLNDL 680

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
              Q +         R+    K   +L+     +    +        +             
Sbjct: 681  RGQTDFLRPYDLIERILTRHKGRRLLIGRLGQEAEDGINALLQQALAYEQT--------- 731

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                               W + +   +        ET   +  +  + ++    ++   
Sbjct: 732  ---------AVPTLTGFLQWAQSDDLQIKRAPDSAGETLRVMTVHGAKGLEAPIVILPDC 782

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
                   K+                       L++         +       Q+ +    
Sbjct: 783  AAPDASIKAEL---------------------LSDPDGVIWKQTSDAQPPRQQAAVEAAK 821

Query: 677  AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732
             ++   +    +         +   +  +      A     RL ++G        +    
Sbjct: 822  VKEAQERDRLLYVALTRAEKWLIVAAAGDGTDKPEAWYDKVRLGMIGSGAMPSAFEFGDL 881

Query: 733  --KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
                G         L+     P  ++    P    +    S  E       P  +   + 
Sbjct: 882  GSGEGLTLGTDWSGLEMRDPHPLTRQTVEMPAHLLR--PISPPEELPKTRSPSDLGGAKA 939

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
            L        +     T RGT  H  +  L            + L++Q             
Sbjct: 940  LGGAEGDTEEV---ATARGTALHGFLEVLAPLPEKDRRHAGDSLLQQYASDT------ET 990

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
             +           +   LE+ +            +P    +  +G  + G  DR+ L+  
Sbjct: 991  VLIHEQLPQILDEALRVLENADFADFFGPDSLAEVPITADLGPLG-RIHGIIDRL-LVGH 1048

Query: 911  GFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
              V   DYKT        E     +  Q+++  AAL  
Sbjct: 1049 SRVVAIDYKTNRTTPATPEETPDGLLRQVAVYHAALAQ 1086


>gi|239978583|ref|ZP_04701107.1| hypothetical protein SalbJ_04062 [Streptomyces albus J1074]
          Length = 272

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 83/257 (32%), Gaps = 36/257 (14%)

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             P     R I +L   P          RGTL H ++  L      + T      +     
Sbjct: 3    CPLLYRFRVIDRLPEKPSP-----AATRGTLVHAVLERLFDAPAAERTAPRATGLLPGEW 57

Query: 841  SHFEKENL--------------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                 E                P      W     ++   +   E+  +  +E     + 
Sbjct: 58   ERLLAERPELAELFSGEEGESTPGERLERWLGEAERLVERWFTLEDPTR--LEPAERELF 115

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             +  +ES G+ L G  DR+D+  +G V I DYKTG  P+     +    Q++  A  +  
Sbjct: 116  VEAELES-GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP-QYAEGALFQMTFYALVVWR 173

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                 +  R++  L Y+   +    D +  D          E+  + L+ +   +Q   +
Sbjct: 174  --LKGVLPRRL-QLVYLGSGEVRSYDPVMAD---------LERVERKLLALWEAIQEATR 221

Query: 1007 PFISHLRLSEKSNIQSE 1023
                  + S+      +
Sbjct: 222  TGDWRPKPSK-LCGWCD 237


>gi|121533515|ref|ZP_01665343.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans Nor1]
 gi|121308074|gb|EAX48988.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans Nor1]
          Length = 733

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 85/736 (11%), Positives = 186/736 (25%), Gaps = 115/736 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           ++     T +A  E+R     + G ++    L    +           ++      N   
Sbjct: 53  NILAITFTNKAAAEMRERVNAMVGIQAKEVWL---STFHAFCARFLRMEIDHLAGFNRNF 109

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                   LA LI     +L    K   P    +   +  NA+  A + A   D    ++
Sbjct: 110 VIYDASDALA-LIKSCLKELNLDEKHFSPSGLQAAISNAKNALQDATDFAAQADNFYGQK 168

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAE 218
                                        + + ++L + NA       +  +       E
Sbjct: 169 V------------------------AEVYRLYQQKLQQNNAVDFDDLLLLAVRLLERNEE 204

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I+I     +  A   L   +A       V+   D       W     ++
Sbjct: 205 VRRRYQDKFQYILIDEYQDTNRAQYLLARLLAAKHRNICVV--GDADQSIYAWRGADIRN 262

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                     + +P   + KL       +  +     V     GR               
Sbjct: 263 ILDFE-----ADYPDAKVIKLEQNYRSTQTILAAANAVIENNTGRKPKA----------- 306

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD 395
                     +         +    A +ER+EA  IA  +         +    A++   
Sbjct: 307 ----------LWTENSRGEPITHYLAFDERDEARFIADTVTKLHTVYRASYGSMAVLYRT 356

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L R GI   I  G+          + + L  I    D +++  ++  P  
Sbjct: 357 NAQSRVIEEALMRNGIPYTIVGGVKFYDRKEIKDILAYLRVILNPADAVSLLRIINVPR- 415

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                          L   A +   + +D++                             
Sbjct: 416 -----RGVGDATIARLTDYAAQNGISLFDVVS---------------------------- 442

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
           + ++   L     + +  L     N  +    L ++D  +  +     +   E  + P  
Sbjct: 443 NPDMVPGLTARAKRPLENLAELIFNLIAVKDQLPVADLIERVMQDSGYLAELEKEQTPQA 502

Query: 576 WFE-EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
               E  + L S+  +   T +          + +  +     +         + ++   
Sbjct: 503 DGRIENLRELLSVAKEFATTAAEDTLE-----NFLAHVALVSDIDTAELADERVTLMTLH 557

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EG++P +           +  L      +   +           
Sbjct: 558 SAKGLEFPYVFLAGMEEGIFPHSRTLMDEEEIEEERRLCYVGITRAERKLYLTNARL--- 614

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                 R++  N +    SR+L  +            ++                  P  
Sbjct: 615 ------RTIYGNTVMYPPSRFLAEIPAELFERHGGPARQTAAGAAVSPAPAATPRPAPVR 668

Query: 755 KRPKPFPPLEAQPRTY 770
                     A+    
Sbjct: 669 PSAAAVSRPSAREWRV 684


>gi|254447033|ref|ZP_05060500.1| exodeoxyribonuclease V, gamma subunit [gamma proteobacterium
           HTCC5015]
 gi|198263172|gb|EDY87450.1| exodeoxyribonuclease V, gamma subunit [gamma proteobacterium
           HTCC5015]
          Length = 1150

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 111/946 (11%), Positives = 236/946 (24%), Gaps = 100/946 (10%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELR-SEFIEITGKKSTILPIIKSLGDVVEEKF 89
           +      PL P  LA     V +    Q L+ +   +       I    +          
Sbjct: 6   INWQAEHPLPP--LAEEVFLVQSNGMAQWLKLNIAADREDGGLGIQAGQRFEMPSRFLWS 63

Query: 90  TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL--YPESPLSLPISPANAIW 147
               +L  +  P  S   +     RL+ +    + D    +  +  +     ++      
Sbjct: 64  AYRAVLGNDKVPTASPYDKATLQWRLMRLLPELVEDDAFRVLRHYLTSDDETVATRKRYQ 123

Query: 148 LAKNLADIIDIIETEEKKW--------EDLHALKNEKYG-----MWWLLAADFLKIASKY 194
           L++ LAD  D  +     W        + L     ++         W     + ++    
Sbjct: 124 LSQQLADTFDQYQVYRADWLEDWAQQRDRLSRFGGQQARALPAEDHWQAQL-WRRLIDDI 182

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--IIIAGSTGSIPATARLMSTVANH 252
            T+     +  S        + A           P  I + G +     T   ++ +  H
Sbjct: 183 ETDSTPSHSVLSRGQIHRRFIDALHSGRDYSAYLPPRITVFGLSSLPYQTLEALAAMGLH 242

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD-----IKR 307
               +++     H    I      +     +    +S   Q  LA            +  
Sbjct: 243 TQVMLMVHNPCQHYWGDIRQHAPTRQAVKDAVAAEHSESEQPLLATWGQQGRDYLQLLAE 302

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP--------NIQKCFSDV 359
            D         E        + +  P      +++      +P        +  +    +
Sbjct: 303 FDQPEDYQQHFEKIDVFNSPADNASPTLLQQWQHSIYDLQSLPEEKNILSKDSLEGDRSL 362

Query: 360 ALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL--------- 406
                 + + E   +   L  + + N     +   ++  D          +         
Sbjct: 363 RFHSCHSAQREVEVLHDQLLDAFERNPALRPQDVIVMVPDIQRYAPHIEAVFGLYKPRTG 422

Query: 407 ---TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP---------- 453
                  +   IS     S     + +  LL++         I  L++ P          
Sbjct: 423 QERDPRYLPYTISDSSLKSANPTVNAIEQLLHSDQLRFSLSDILGLLESPALQRRFGLEN 482

Query: 454 ----LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
               L K    +  +    N  +         S +  +  S         +         
Sbjct: 483 SDPSLLKQWLEQAGVRWGLNREQRAQHDLPSESSEPSEALSANTWAFGLNRLLLGYSSEA 542

Query: 510 SRLSEEDKELA-VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                E          + I      + T      S     + S W++     L      +
Sbjct: 543 RWNGIEPSAPFSNSDAEAIGALWRLINTLDGFSQSLQHAKTPSQWSQFIGQTLLEFFDSD 602

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                 L+ +     L                      + +   +D   +  +      +
Sbjct: 603 DDSDAPLF-DALNHALEQWLDACQRADFNDAIPLSMVREELLPALDDSGLNQRFLAG-CI 660

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
                +  R + F  + L GLN+G +P+   +  F     +         +         
Sbjct: 661 NFASLMPMRAVPFKMVCLLGLNDGDYPRQQPRQDFDLMRRREHYRPGDRSRRDDDRYLFL 720

Query: 689 EMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLV-------------------LGGTD 726
           E A   R  L  +   R   +N     S  L +L                     L    
Sbjct: 721 EAALSAREALYLSWVGRSIRDNSVRAQSILLAQLRDDIAARFQLDNDAHPTLLEYLTLEH 780

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-----PPLEAQPRTYSFSEIKQLIND 781
                  R    L   +   Y  +     R              + +T S S+++ L+  
Sbjct: 781 PLQANSPRYLDTLQSAQYFTYAREWFDEPRSSDRNTTLKAIDSNEAQTLSLSDLRLLLRQ 840

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN-TPEINHLMKQ 837
           P  V+ R+ LK+ F        D       G   + +   L++          +N  + +
Sbjct: 841 PCDVFLRQRLKIAFDDGDDSVLDHEPFSLDGLDRYQLGQSLLEDGAQDLSPSGLNAALDR 900

Query: 838 IIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKI 881
                     LPP    +         ++ +   + E+ Q+ I+ +
Sbjct: 901 AKARWLSSGQLPPGEFGLTLIEQRLDDVADTLSRYREQSQALIQPL 946


>gi|237785507|ref|YP_002906212.1| putative RecB family exonuclease [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758419|gb|ACR17669.1| putative RecB family exonuclease [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 270

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 20/235 (8%)

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-KK 822
             +    S S        P     R I +L              +GTL H ++  +  + 
Sbjct: 3   ARRRMALSPSRAGDYRQCPLLYRYRAIDRLPEPKTI-----AQVKGTLVHAVLENMYGQP 57

Query: 823 RINKNTPEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
           R  +  P+   ++K       EK     E +P    + +      +   +   E     +
Sbjct: 58  RPERTYPKATKMLKPQWALMVEKDPDLRELVPEDKLLPFLVECRSLLKGYFAMEN--PEN 115

Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937
            +     +     +   G+ + GF DR+D+  +G + + DYKTG  P    +Q+ +  Q+
Sbjct: 116 FDADECEMLVDTTLP-NGVPVRGFIDRVDVAPTGEIRVVDYKTGKKPIPRFSQQAV-FQM 173

Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK--KYSADELSEKS 990
              A       F+ I  +    L Y+++     +     + +  +    +L  K 
Sbjct: 174 RFYALVYWR-LFNIIPTQ--LRLMYLKVMDSMYLAPSQVELEYFERDVGDLWSKI 225


>gi|218533282|ref|YP_002424097.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
 gi|218525585|gb|ACK86169.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
          Length = 1117

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 85/826 (10%), Positives = 195/826 (23%), Gaps = 60/826 (7%)

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
            A+ L    + +  E    E    LK              +    + +  R          
Sbjct: 304  AERLQACAERLHVECC--ETWARLKANAASELLARLVGAVGAVLERYQARKRAGALLDFD 361

Query: 209  GYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLM-STVANHPNGAIVLPGL 262
                A  +   EH      +      +++     + P    ++       P GA  +   
Sbjct: 362  DLIAAAAKLLREHEIVRQALGRRYRHVLVDEFQDTDPLQTEILWRLCGELPAGATDVWAQ 421

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD-----IKREDVKRLGNVS 317
                P A++     K           ST+ +     L                 R     
Sbjct: 422  RVLRPGALFLVGDPKQAIYRFRGADVSTYVRARNCILAQSPGDVLSISTNFRSCRSILAY 481

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENK---IPNIQKCFSDVALIEADNEREEAISI 374
             +   R+++           D  + D          ++                 EA ++
Sbjct: 482  VDQRFRNILSGVGQPGFTALDAYHPDHGRGPCIAALDVPAGADGAKQDAQALRDVEAEAV 541

Query: 375  AIALRMSLDENKK-------------KSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            A      + +                  AL+    +   R +  L   GI +   AG   
Sbjct: 542  ADLCARLIGQQLVTCKRDGTRTLRAGDIALLAPSGSDLWRYEEALESRGIPVSTQAGKGF 601

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                    L +L   +    D +A+  L++ P       E          +         
Sbjct: 602  FRRQEIHDLIALARVLADPRDTLALGALLRGPAIGLTDEELLDLVDGLPRDPEHPESIPK 661

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                +D+   +   +A           +  L     ++    VD ++  + P+V ++ + 
Sbjct: 662  LRLQVDVAH-ISHPVARPVFERLQVLAKRALGTTPHDILSQAVDALM--LRPVVRHRYDG 718

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
            ++     +I  + +++              +   W     + +           S    +
Sbjct: 719  HAERALANIDLFLEMSRPYSVRGLRAFAGVMKASWEGR-TRAVEGRPDSQEAAVSLFTMH 777

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
            A + ++    +    + + K    + +                     +           
Sbjct: 778  ASKGLEWPVVIPINTSTRTKAVTGALI---------------------DRTSNCLYCPVF 816

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
                      L  +  E    +    +  A   R  +      E    T  S  +   L 
Sbjct: 817  GVRPVGYGEALENEKREVGNERVRLWYVAATRARETLVLPRFVEPGGSTSWSSVVDLGLD 876

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                   D L                                 +        +   +   
Sbjct: 877  DLPAIDIDRLPTAPPPASTEPANAQTREVFAAEADAVARRRRLSWVVPSRGEDAGTIACC 936

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
            P  +    +                +RG L H ++ E++     +   ++      +   
Sbjct: 937  PSDMVEEEV--DVPPTAAAIPQGGRERGILIHKLLEEILTGETGEV--DLEGRAGVLARQ 992

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
               +    P   +    +   +  +    E        +  + +    ++        G 
Sbjct: 993  LGLRTKATPDFALDLGEVAASVLRALSVPEIAGMRERLQPELPVFGFESLADEDHATAGV 1052

Query: 902  ADRIDLLKSGFV-DITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            AD I L   G    + D+K+  +P  E        Q+     A +A
Sbjct: 1053 ADAIILDGLGRPDVVVDWKSDVDPS-EAVIADYRCQVLRYLLATEA 1097


>gi|225351915|ref|ZP_03742938.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157162|gb|EEG70501.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 905

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 76/733 (10%), Positives = 181/733 (24%), Gaps = 101/733 (13%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVV 85
             L     +   +    +S+     T +A  E+R     + G ++       I +     
Sbjct: 62  RVLTRRIAWLLAHGFWASSILAITFTNKAAAEMRERLASLVGPEAEHMW---ISTFHSAC 118

Query: 86  EEKFTADL-LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                 D   +       + +      L +LI      L    K   P   L        
Sbjct: 119 VRILRRDGKEIGLTSGFSIYDTADCERLVKLISG---DLNIDTKRYTPRMLLGKISDCK- 174

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD---FLKIASKYWTERLVE 201
                 +L    D +++    ++            + + A D    + +    +  RL  
Sbjct: 175 -----NSLISWQDQLKSVNCDYK-------PGQRGYQVSAGDVDELVAVMYAEYQYRLAM 222

Query: 202 LNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            NA       +  +       +     +     I +     +  A   L+  ++   +G 
Sbjct: 223 ANAVDFDDLIMRTVELFQRCPQVSEYYRHKFRYIFVDEYQDTNHAQYVLVRELSGIDSGE 282

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                 D H+             +  +     S    Y+            E        
Sbjct: 283 ----QPDPHM-----RGAGRVGPSWITV-VGDSDQSIYAFRGADIRNIQDFEQDFPNAKT 332

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                      +                 +     + +    +    ADN ++EA  IA 
Sbjct: 333 IMLEQNYRSTQTILDAANAVIARNENRKPKKLWTALGEGDK-IVGYAADNAQQEAGWIAN 391

Query: 377 ALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            +    +E     +  A++      +R ++  +    +   +  G             + 
Sbjct: 392 EIARIHNEEGVAYRDIAIMYRANAQSRSLEEAMINANLPYQLVGGTKFYERREIKDALAY 451

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L AI    D + +  ++  P    G   + L  +                        + 
Sbjct: 452 LQAIVNPADNVNVRRILNVPKRGLGVRAEGLVASYADAH------------GTTFFEAIE 499

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                +  +T      S   +   ELA    DH  +    +                S  
Sbjct: 500 HMEQIEGMSTRTTKPLSAFRDMMHELAAFAKDHDTKPSEVVAEVLAK----------SGI 549

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +                L  L         ++             A    +++    + 
Sbjct: 550 LEELQRSEDPQDASRVDNLSQLQSVAAEFEQNTP-----------DATLAGFLETTALVA 598

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
           D + +  + E S  + ++    ++ L +  + L G+ +G +P   A              
Sbjct: 599 DSDQLPGENEDSGKVTMMTLHTAKGLEYPYVFLTGMEQGTFPHQRA-------------- 644

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLG----- 723
           ++   +   +    +      +  +Y      R+        + S++L  +         
Sbjct: 645 MEDTSELAEERRLAYVGITRAKRRLYVTRAAVRAQWGQASDMMPSQFLDEIPDELIDWKR 704

Query: 724 GTDFFDNLKKRGQ 736
                + ++   Q
Sbjct: 705 REAGVERMRASWQ 717


>gi|73543009|ref|YP_297529.1| ATP-dependent DNA helicase Rep [Ralstonia eutropha JMP134]
 gi|72120422|gb|AAZ62685.1| ATP-dependent DNA helicase Rep [Ralstonia eutropha JMP134]
          Length = 704

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 76/718 (10%), Positives = 173/718 (24%), Gaps = 96/718 (13%)

Query: 34  FRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI----LP----IIKSLGDVV 85
                  P  +A+VT    T +A +E++    ++   K+T     LP     + +   + 
Sbjct: 42  IEDKGFEPRHIAAVT---FTNKAAKEMQERIGKLMEGKTTREGKRLPLKQLTVCTFHSLG 98

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
            +    +                   +      +      +I++    +   L     + 
Sbjct: 99  VQILRMEAEHVGLKP--------QFSIMDSDDCF-----GLIQEQLGTTDKKLIRGVQST 145

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
           I L           +      E   A+           A  F     + +   L    A 
Sbjct: 146 ISL----------WKNGMVDPE--TAIAQAANADEHQAALVF-----RNYVATLNAYQAV 188

Query: 206 SPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI--V 258
                        A +       +      ++     +     +L+  +A   +      
Sbjct: 189 DFDDLIRLPAELFARNETVQLKWQNRLRYFLVDEYQDTNACQYQLLKLLAGGSHLRAPAF 248

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               D       W   T  +  +  ++              +  L+       R+   +N
Sbjct: 249 TAVGDDDQAIYGWRGATLDNLRLLQTDFPDLK---------VVKLEQNYRSTVRILEAAN 299

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            +   +  +    L  +   M +   +        +  S V  + A      A       
Sbjct: 300 AVIANNPKLFDKKLWSEH-GMGDPIAINPMNDEEHEAESVVFRLSAHKFERRAQF----- 353

Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                   +  A++    + AR  +  L R  I   +S G           + + L  I 
Sbjct: 354 --------RDYAILYRGNHQARLFEQILRRERIPYVLSGGQSFFDKAEIKDICAYLRLIA 405

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
             +D  A    +  P    G     +             G       + L    +     
Sbjct: 406 NPDDDPAFIRAITTPRRGIGNTTLEVL------------GTFAGQAKVSLFEAAMMGGIE 453

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLV-DHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
            K             E    LA     D     +  L+     +                
Sbjct: 454 AKLQPRQLEPLRVFCESMVRLADRAAKDPATVVLDDLMEGIHYEAYLYDAFDERQAQSRW 513

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              L+ +   + +        E         +                +++   +     
Sbjct: 514 TNTLEFLDWLKRKGTKPEAEAEGEAEAEGEATGFDNA-DGFGNEGKNLLELTQTVALMSM 572

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
           ++ + E    + +     S+ L +  + L G+ EG+ P               D+  +  
Sbjct: 573 LEGREEDPDAVRLSTLHASKGLEYPHVFLVGVEEGILPHCRED---------EDMGDEKI 623

Query: 678 EKYIGQAAHDFEMANGTRHLIYT--RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
           E+           A  + H+ +   R           SR++  + +       D++  
Sbjct: 624 EEERRLMYVGITRAQRSLHISWCKKRKRARETYSCEPSRFIGEMKLEEAPAPKDDMPA 681


>gi|229068796|ref|ZP_04202092.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus F65185]
 gi|229078429|ref|ZP_04210990.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock4-2]
 gi|228704851|gb|EEL57276.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock4-2]
 gi|228714304|gb|EEL66183.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus F65185]
          Length = 1166

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 97/893 (10%), Positives = 211/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KNDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLSDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 858

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLG-GTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             R       L + +IP     +     V     +     +   +   +    L      P
Sbjct: 859  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 918

Query: 753  HYKRPKPFPPLEAQPR-----------TYSFSEIKQ--LINDPYAVYARRILKL----DF 795
                 K         +             S +EIK+     D       + L+       
Sbjct: 919  LESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNAFIKKLRAPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIHLTGFAD 903
                  K+   F     K   + + +   +P  M +                I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGNSGESILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|86136735|ref|ZP_01055313.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            MED193]
 gi|85826059|gb|EAQ46256.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            MED193]
          Length = 1122

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 83/883 (9%), Positives = 206/883 (23%), Gaps = 118/883 (13%)

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
            +          +       P +  +       L +    ++D +E    + E   A +  
Sbjct: 269  LADLATLESIFLTGASAADPFAAKVGKFPTKKLREANVALMDQLEPLMLRVESARAKRLA 328

Query: 176  KYGMW-WLLAADFLKIASKYWTERLVELNASS--------PVGYQIALMRAEAEHLMKGT 226
                        F +     +  R  +                     + A   + + G 
Sbjct: 329  LMAARKSQDLHQFAQAFLPEYEARKQQRGWLDFDDLILNARHLLNDPAVAAWVLYRLDGG 388

Query: 227  KGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEK 277
               I++  +  + P    ++  +A                +    D       +      
Sbjct: 389  IDHILVDEAQDTSPVQWDVIEKLAQEFTAGIGARSDVERTIFVVGDKKQSIYSFQGADPD 448

Query: 278  STNITSSNTT--YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            + +          S          L+F       + RL ++  +   R+   S +     
Sbjct: 449  AFDRMQVEFANRLSESGSGLQNAALEFSFRSSAAILRLVDLVFKDSPRAGFHSDALHRAF 508

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREE------AISIAIALRMSLD------ 383
             SD+     L   +               D           A  IA  ++  +D      
Sbjct: 509  KSDLPGRVDLWPAVEKTDDDDESDWTDPVDRPGSRHHTVILAERIARQIKEMIDNKVTIP 568

Query: 384  --------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
                                 L+     L   +        + I  +  + +   L    
Sbjct: 569  EDGPTRGTFQRRPVHAGDFLILVQRRSELFSEIIRACKNADLPIAGADRLKVGAELAVKD 628

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
            + +LL+ +    D +A+A ++K PL  +     +    + +         ++  +     
Sbjct: 629  IAALLSFLATPEDSLALAEVLKSPLFGWSEQMLFDLAHRRSS-KHLWPALRDRREEFPET 687

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
              VLD +  Q +         R+    +    LL     +    +    +   +      
Sbjct: 688  MAVLDDLRDQTDFLRPFDLIERILTRHQGRQKLLGRLGAEAEDGINALLSQALAYER--- 744

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
                                     +W + +   +        +    +  +  + ++  
Sbjct: 745  ---------------SDIPSLTGFLVWMQTDDLDIKRQMGASGDMIRVMSVHGSKGLEAP 789

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
              ++     +                    + + ++  G      PK+   +   S    
Sbjct: 790  IVILPDTAKRNAPS----------------DAEIMVADGTPLWKLPKDQMPDLLFSAREA 833

Query: 670  SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
            +       ++   +    +         +   +    +       W QR+          
Sbjct: 834  AQ-----EKQQNERLRLLYVALTRAEKWLIVATAGTLSKEG--DSWYQRVEAALLEGGAT 886

Query: 730  NLKKRGQCYLDW----TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                 G   L         L+  +K+   K     P +         +    +       
Sbjct: 887  KCDLPGGEGLRLSHGDWEGLELVSKEVQSKHRSVLPEIFTHLAPAYLAPEPAITPSDLG- 945

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                  K         + +   RG+  H ++  L     +      + L+ +  D     
Sbjct: 946  ----GAKALPGDQGLDEEEAKARGSRLHLLLEHLPGHPSSDWPLLADRLLSEATD----- 996

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
                       R      + + L +              +P      S    L G  DR+
Sbjct: 997  -----------RAALLAEASAVLSNASLSHIFAPDTLAEVPVTAHFGSQ--RLYGIIDRL 1043

Query: 906  DLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
             +     + + D+K+            K +  Q+     AL  
Sbjct: 1044 VVRPDKVLAV-DFKSNAEVPNTAAACPKGLLRQMGAYGHALAQ 1085


>gi|15827680|ref|NP_301943.1| hypothetical protein ML1312 [Mycobacterium leprae TN]
 gi|221230157|ref|YP_002503573.1| hypothetical protein MLBr_01312 [Mycobacterium leprae Br4923]
 gi|4200265|emb|CAA22922.1| hypothetical protein MLCB2533.08c [Mycobacterium leprae]
 gi|13093231|emb|CAC31693.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933264|emb|CAR71407.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 294

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 70/233 (30%), Gaps = 17/233 (7%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
             S S        P     R I +L               G++ H  +  L      +  
Sbjct: 18  ALSPSRAADFKQCPLLYRFRAIDRLPE-----APSAAQLLGSVVHTTLQRLYGLPALRRC 72

Query: 829 PEINHLMKQIIDSHF--EKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVN 884
            +    + + + +     + +L   +D   R      + + L   +  +  +        
Sbjct: 73  SDTARSLVESVWNQMIAAERDLDGELDAKQRTQLLDEARTLLSGYYRLEDPTRFNPQSCE 132

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAA 942
              ++ +   G+ L GF DRID+  +G + + DYKTG  P    A        Q+   A 
Sbjct: 133 QRVEVELAD-GLLLRGFIDRIDVAATGELRVVDYKTGKAPPAAQALAEFKAMFQMKFYAL 191

Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            L             A L  I L     +D   +  +     +      + + 
Sbjct: 192 TLLHS-----RGVLPARLRLIYLADSQLLDYAPDRDELLRFGKTLMAIWRTIQ 239


>gi|302335486|ref|YP_003800693.1| ATP-dependent nuclease subunit B [Olsenella uli DSM 7084]
 gi|301319326|gb|ADK67813.1| ATP-dependent nuclease subunit B [Olsenella uli DSM 7084]
          Length = 1125

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 102/949 (10%), Positives = 203/949 (21%), Gaps = 189/949 (19%)

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            F       +  +L              L    A+  ++    P++ AG   S  A   LM
Sbjct: 145  FACDLLADYRSQLAPHGLVERCEAMGRLPDLLADQGVRPV--PLVAAGMGPSSLALLSLM 202

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
            + +A+H +  +V+                        S+   ++      A+ L      
Sbjct: 203  ARLASHGDVTLVV-----------------------RSDGGPASSLAEGFARRLAERCSD 239

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                 R     +     S        P   +  R             +    V  +EA  
Sbjct: 240  EGADVREDVSPSAPGAPSAASPVPPPPELQALRRLAFRGGAGGQGTIEATGSVVRLEATG 299

Query: 367  EREEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
               +   +A  L R +     +   +          +  +L   G+ +  S  + +    
Sbjct: 300  PLAQWELVADELERQARRGACEMVVVAPRPDRCWEALAPKLAARGMRVRASVPVGVRDVP 359

Query: 426  HSSILTSLLNAIFK--------------------------LNDFMAIATLVKHPLAKFGF 459
             +        A+                                  I   +    +    
Sbjct: 360  VARAYLDFAQAVCHLAELAATWPRPCDGPEGPVPQLGDMSWWPPRPIVDFLLSDASAVER 419

Query: 460  PEKYLSRAKNALELVALR-------------------------GNKNSYDIMDLKSLVLD 494
             + +   A+                                    +     + L   + +
Sbjct: 420  AQAWALDARWRANRSLTPQQVLDTLQRQSATSPLVQRVTQQVLRGRVGSGALVLARALQE 479

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            R+                    +          L   +  V      ++      I+   
Sbjct: 480  RVRGDVRREGCGREGYGREGHVRGGCAREGKGGLGASSGGVACTDAISALAAIQQIARTL 539

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
             L      +        L         + L+     +       +     +   +     
Sbjct: 540  GLLGISAHSEKKSTTVFLTAAEVVSLVRELAERQQILRRLSLGERDGGASFEGPL----- 594

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTL-ILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                   +     + IL   ++  L   ++ +L                  ++++ + L 
Sbjct: 595  -PNADHPVADGPIVRILSRAQAAQLETGSVDVLASCGLSSLDYPLDPPDGAAQMLLAKLG 653

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
            L  A   + QA   F  A                 +  PT  +  L  LL   G    + 
Sbjct: 654  LADASDPLEQARAQFGAAVAAPRETLVLERTLHDGDAKPTYPAVVLTELLACYGITPEER 713

Query: 731  LKKRGQCYLDWT---------------------RKLDYTTKQPHYKRPKPFPPLEAQ--- 766
            L                                 +L  T +     R     P E Q   
Sbjct: 714  LDPADPLAPRTLGESEVTRNLTARSLAPEVRGYWQLPPTGRVSEGSRRMVVVPREGQEGF 773

Query: 767  ---PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                 + S S+I+  +  PY  +  R L L        D      G+  H ++    +  
Sbjct: 774  YEGRPSLSASQIESYLECPYKWFTLRRLGLA---GIDADFGYLQMGSFAHRVLEVSHRHL 830

Query: 824  IN----------------------------------KNTPEINHLMKQIIDSHF------ 843
                                                +N      L+   ID H       
Sbjct: 831  AQEAAISSGLVDAGESPSVDLDLVPQRCIPGSRVTRENLAHAQELVDLEIDRHLMHQRQH 890

Query: 844  ------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES---- 893
                  +        + +      +   S L  E       E     +            
Sbjct: 891  ATTLAAQSLVPHTATEELRLSYLRRDLRSTLAFEAGRFRGFEPRRFELRFGGTRPDSAHV 950

Query: 894  --IGIHLTGFADRIDLLKSGFVDITDYK---------------TGDNPKKETAQKLIDPQ 936
               G    G  DR+D+   G   + DYK                G  P  +        Q
Sbjct: 951  TYAGADFVGSIDRVDVDAHGRAVVVDYKHKGKGGFAAEYDVFGEGGCPAADAIALPRRVQ 1010

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIR-LKQKFKIDCITNDKKKYSAD 984
              + A  ++          +V    Y+  +        I       + D
Sbjct: 1011 SLIYAQVVRR----MFPDLRVVGAVYLSTMGAGEGDHEIAGVVDANALD 1055


>gi|111022536|ref|YP_705508.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
 gi|110822066|gb|ABG97350.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
          Length = 828

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 84/727 (11%), Positives = 187/727 (25%), Gaps = 80/727 (11%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +        + P     +     T +A  E+R     + G ++  +  + +  
Sbjct: 60  TAVLTRRIAYLLAERGVMP---GQILAITFTNKAAAEMRERVAHLVGPRANSM-WVSTFH 115

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                   A   L   LN   S          L +I ++   D  +              
Sbjct: 116 SSCVRILRAQAALLPGLNSNFSIYDADDSRRLLTMIAKDLNIDTKRYS------------ 163

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                 A+ LA  I  ++ E    +   A  ++            +     ++ +RL   
Sbjct: 164 ------ARLLATHISNLKNELVDPDQASADADKDPAE----LPRLIAKVYGHYQQRLRSA 213

Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG-- 255
           NA          +             +     +++     +  A   L+  +        
Sbjct: 214 NALDFDDLIGETVAMLQAFPQVAEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGGTADGE 273

Query: 256 --------AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
                   A +    D       +   T ++            +P      L       +
Sbjct: 274 DADHRVAPAELCVVGDADQSIYAFRGATIRNIEEFE-----RDYPDARTILLEQNYRSTQ 328

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
             +    +V ++  GR                      E ++         +    ADNE
Sbjct: 329 NILSAANSVISKNTGRR---------------------EKRLWTDSGVGELITGYVADNE 367

Query: 368 REEAISIA---IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            +EA  +A     L  S D      A+     N +R ++    R G+   +  G+     
Sbjct: 368 HDEASFVASEIDKLVDSGDAKFGDVAVFYRTNNSSRALEEIFIRLGVPYKVVGGVRFYER 427

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                + + L  +   ND +++  ++  P  +          A ++ +            
Sbjct: 428 KEVRDIVAYLRVLANENDTVSLRRILNTPR-RGIGDRAEACVAVHSEQRGISFAEALRDG 486

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                 L+  R      +        R+    +  A  +V   L  I  +V     +   
Sbjct: 487 GEGRVPLLNTRSQKAIASFLELMDGLRVLLPPETTADDVVPDQLGDIGDVVEAVLERTGY 546

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
              L+ S   +          L    +  +         +       ++           
Sbjct: 547 RAELAASSDPQDGARLDNLNELVSVAREFSSDARNAAGLVEPPEDGDVDARDGEPDPGSL 606

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
              +    +  ++ +        + ++    ++ L F  + + G  +G +P   A     
Sbjct: 607 AAFLERVSLVADSDQLPDNDEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPT 666

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
               +  L      +   +       A         RS     I    SR+LQ +     
Sbjct: 667 ELSEERRLAYVGITR--ARQRLYLTRA-------VMRSAWGQPIQNPESRFLQEIPSDLV 717

Query: 725 TDFFDNL 731
               ++ 
Sbjct: 718 HWRREDP 724


>gi|304321353|ref|YP_003854996.1| DNA helicase II [Parvularcula bermudensis HTCC2503]
 gi|303300255|gb|ADM09854.1| DNA helicase II [Parvularcula bermudensis HTCC2503]
          Length = 775

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 76/745 (10%), Positives = 175/745 (23%), Gaps = 118/745 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R     + G +   +  + +   V                     
Sbjct: 72  DLLAVTFTNKAAREMRERVGVLVGDQVEGMRWMGTFHSVAALI----------------- 114

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +  +          W  + LA ++D  +    +
Sbjct: 115 LRRHAELVGLTPAFTIIDTDDQIRLCKQ--VISAAGVDEKRWPGRGLAGVLDAWKNRGLR 172

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAE 220
            E++      ++     +           + ERL   NA+      +  +       +  
Sbjct: 173 PEEVPKDDAFQFADGRAI------DLYTAYQERLRTFNAADFGDLLVHNLTIFRQETDIL 226

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEK 277
           +  +     I++     +  A    +  +     G     +    D       W     +
Sbjct: 227 NAFRRRFRYIMVDEYQDTNIAQYLWLRLLGTDDEGRSGGNICVVGDDDQSIYGWRGAEVE 286

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +                            G     +                 
Sbjct: 287 NILRFEKDFQ--------------------------GAKVIRLEQNYRSTGAILSAATHI 320

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITAD 395
              N D L   +       + V L    +  EEA  I   +  +  + +     A++   
Sbjct: 321 ISHNKDRLGKTLWTDADHGAAVTLRGVWDAPEEARVICDEIEAAQVKGRSLSDIAILVRA 380

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
               R  +  L   G+   +  G        +    + L  +   +D ++ + ++  P  
Sbjct: 381 SFQMRAFEERLNTAGLPYKVVGGPRFYEREETRDALAYLRLVRNPDDDLSFSRIINKPRR 440

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
            FG                                     ++         +     S  
Sbjct: 441 GFGDKTLTQLSQVARQM--------------------GASLSAAGAALLETNELKGKSRS 480

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             +  +  +         L   +  +     +  I+ W        Q    +    +   
Sbjct: 481 ALKEFLDNIARWRSAAADLAPGRLVETVLEESGYIAFWKASKTAQAQGKLENLKELVQAA 540

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              E  +      S + E                                  ++++    
Sbjct: 541 EEFETLEGYLDHVSLVAERSGD-------------------------TGEGQVWLMTLHA 575

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + L G  E         + F S    +D      E+    A      A    
Sbjct: 576 AKGLEFPVVFLPGWEE---------DIFPSGRAINDNGQVGLEEERRLAYVGVTRARERC 626

Query: 696 HLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
           H+ +  + +       ++ SR++  L      +        G    +      +      
Sbjct: 627 HISFAANRQVYGRWQSSLPSRFIDELP-EKEIEVLSEPGLYGVKAAELPAYSRFADIAAD 685

Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQL 778
            +R    P  +   R    S    L
Sbjct: 686 PERSYRTPGWQRAQRARGASTAPAL 710


>gi|302524115|ref|ZP_07276457.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. AA4]
 gi|302433010|gb|EFL04826.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. AA4]
          Length = 804

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 78/690 (11%), Positives = 185/690 (26%), Gaps = 94/690 (13%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+R     + GK++  +  + +   +                  V  ++R 
Sbjct: 77  ITFTNKAAAEMRERVAALVGKRANAM-WVSTFHSMC-----------------VRILRRE 118

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            +   +   +     D  K L       L I P      A+ LA  I  ++ E    E  
Sbjct: 119 AKTLDMSSSFSIYDSDDTKRLITLVARDLDIDPKKYA--ARTLAVHISNLKNELVDPEQA 176

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA---LMRAEAEHLM--K 224
            +                +      +  RL   NA       +    L++A  +     +
Sbjct: 177 ASKAANDLERR-------VAEVYAEYQRRLSSANAFDFDDLIMRTVSLLQAFPDVAEYYR 229

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHP------NGAIVLPGLDCHIPTAIWNTITEKS 278
                +++     +  A   L+  +A           A +    D       +   T ++
Sbjct: 230 RRFRHVLVDEYQDTNHAQYTLVRALAGTEATDTGIEPAELCVVGDADQSIYAFRGATIRN 289

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +                 L+      + + + +N +  R+       L  D+ D
Sbjct: 290 IEEFERDFP---------NAHTILLEQNYRSTQTILSAANAVIARNPNRRAKRLWTDSGD 340

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITAD 395
                               +    +DN+ +EA  +A    +L    + +    A+    
Sbjct: 341 G-----------------EKIVGYVSDNDHDEAAFVAGEIDSLAEKGEADYSDVAVFYRT 383

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            N +R  +    R G+   +  G+          + + L  +   +D +++  ++  P  
Sbjct: 384 NNQSRVFEEIFIRLGLPYKVVGGVRFYERREVRDMIAYLRVLANPDDTVSLRRILNVPKR 443

Query: 456 KFGFPEKYLSRAKNALE---LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
             G   + +       E     A   +     +  L       I             +  
Sbjct: 444 GIGDRAEAVVATHAERERISFWAALRDAVDDKVALLNPRSAKAITGFVTLLDELQEMASS 503

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
             E  +L   +++         +    +        ++++   +     +      + + 
Sbjct: 504 GTEVHDLLEAVLERTGYRAE--LEESDDPQDASRVENLTELVTVAREFAEFTAEVTNDEN 561

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
             L           +    +     + A    +  +     +   +  +     +  + +
Sbjct: 562 AEL-----------VLDDGVPAPGSLPAFLERVSLVADADSIPSPDGGEEGDGGAGVVTL 610

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L +  +   G  +GV+P   A                  E+ +   A     
Sbjct: 611 MTVHTAKGLEYPVVFCTGWEDGVFPHMRALGDPAE---------LAEERRLAYVAITRAR 661

Query: 691 ANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
                    TRS         ASR+L  L 
Sbjct: 662 QRLYVSRALTRSAWGQPQMNPASRFLDELP 691


>gi|254775065|ref|ZP_05216581.1| RecB family protein exonuclease [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 301

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 74/253 (29%), Gaps = 17/253 (6%)

Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
           QP  ++    P  +      S S        P     R I +L              RG+
Sbjct: 4   QPEARQSAARPTGQVSRPALSPSRAADFKQCPLLYRFRAIDRLPE-----APSPAQLRGS 58

Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII----WRHLFHKISHS 866
           L H  + +L +    +  PE    +           +     D+      + L    +  
Sbjct: 59  LVHAALQQLYELPAAQRGPETALALVGPAWEQLLAASPELTADLDPTQHGQLLAEAQALL 118

Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
              +  +  +  +        ++ +    + L GF DRID+  +G + + DYKTG  P  
Sbjct: 119 AGYYRLEDPTRFDPQCCEERVEVELADGTL-LRGFIDRIDVAATGELRVVDYKTGKAPPA 177

Query: 927 ETAQKLID--PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
             A        Q+   A AL               L  I L     +D      +    +
Sbjct: 178 ARALAEFKAMFQMKFYAVALLRS-----RGVPPTRLRLIYLADGQVLDYSPEYDELLRFE 232

Query: 985 ELSEKSLKNLIEI 997
           +      + +   
Sbjct: 233 KTLMAIWRAIQSA 245


>gi|229177656|ref|ZP_04305033.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 172560W]
 gi|228605846|gb|EEK63290.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 172560W]
          Length = 1166

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 97/893 (10%), Positives = 211/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KNDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 858

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLG-GTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             R       L + +IP     +     V     +     +   +   +    L      P
Sbjct: 859  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 918

Query: 753  HYKRPKPFPPLEAQPR-----------TYSFSEIKQ--LINDPYAVYARRILKL----DF 795
                 K         +             S +EIK+     D       + L+       
Sbjct: 919  LESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNAFIKKLRAPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI------------ESIGIHLTGFAD 903
                  K+   F     K   + + +   +P  M +                I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLVAEEAYQDWQGNSGESILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|46445668|ref|YP_007033.1| ATP-dependent DNA helicase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399309|emb|CAF22758.1| probable ATP-dependent DNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 761

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 84/691 (12%), Positives = 179/691 (25%), Gaps = 117/691 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +++     T +A QE+R    ++T         I +   +  +     +         V 
Sbjct: 87  SNILGVTFTNKAAQEMRERVCKLTQHHVL----ICTFHSLGAKILRESIH--------VL 134

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
             QR   +          +   + +L  +            I  AKN+      ++    
Sbjct: 135 GYQRDFTIYDE-EDVNKLVKACLMELNWQDKKVDAKPFRQMISQAKNM------LQQPNP 187

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
            ++       ++                  + ++L E  A           +   E+   
Sbjct: 188 HYDKEVTSDFDEAFPH----------VYALYQKKLQEYQAVDFDDLLFLTAKIWREYPSV 237

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     ++I     +      + + +        V+   D       W     ++ 
Sbjct: 238 LNYYQDRWPFVLIDEYQDTNAVQYTMTTLLVEKRRNLFVV--GDPDQSIYSWRGANVQNI 295

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +   +   Q                          +       +      +    
Sbjct: 296 LNFERDYPGAKVIQ--------------------------LEQNYRSRTNILNAANALIS 329

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396
            NT+  E ++ +       V L   D++R EA  +A  +     E++    +  +     
Sbjct: 330 HNTNRFEKELWSELGAGEKVKLFIGDDDRAEAEFVASQISYHHKEHQISLSEMVIFYRTN 389

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R  +  L   GI   I  GI          + + L       DF+A A  +  P   
Sbjct: 390 AQSRVFEDYLLYRGIPYVIVGGISFYQRREIKDILAFLRFAQSGADFVAFARTINLP--- 446

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                                          L    +++I    N   +  +    +   
Sbjct: 447 ----------------------------KRGLGETTIEKIRQSANEERMTIYAFCEALLK 478

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                 +V    +    L  Y                 +L +  ++      +       
Sbjct: 479 NTPMKSIVRLTAKQREGLTEYLAIVQELRTLSKAGSVRELVLAAIEKTKYLNYLMEDKES 538

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
           +E+  + L  L +K +E    I A        +  L    ++    +    L ++     
Sbjct: 539 YEDRRENLDELITKAVE--WEISATDPSLEAFLEELSLKSSLDEANQAVERLSLMTIHNG 596

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F T  L GL E ++P   +KN                E    +    +      + 
Sbjct: 597 KGLEFTTTFLVGLEEDLFPHVNSKNN--------------REDVEEERRLCYVGITRAKE 642

Query: 697 LIY-----TRSLRENNIPTIASRWLQRLLVL 722
            +Y     TR L  N      SR+L+ L   
Sbjct: 643 YLYLSFCHTRYLWGNLRFQRPSRFLKELPSE 673


>gi|255325695|ref|ZP_05366792.1| RecB family exonuclease [Corynebacterium tuberculostearicum SK141]
 gi|311739434|ref|ZP_07713269.1| exodeoxyribonuclease V beta subunit [Corynebacterium pseudogenitalium
            ATCC 33035]
 gi|255297305|gb|EET76625.1| RecB family exonuclease [Corynebacterium tuberculostearicum SK141]
 gi|311305250|gb|EFQ81318.1| exodeoxyribonuclease V beta subunit [Corynebacterium pseudogenitalium
            ATCC 33035]
          Length = 276

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 81/272 (29%), Gaps = 32/272 (11%)

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
             +P   S S        P     R I KL              +GTL H ++ E+ K   
Sbjct: 7    PRPLALSPSRASDYKQCPLLYRFRAIDKLPEPKTI-----AQVKGTLVHAVLEEMHKLPR 61

Query: 825  NKNT-PEINHLMKQII------DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
             + T P    ++K         D    +          +     ++   + + E      
Sbjct: 62   EERTYPAAVKMIKPSWAEMTSKDDELLELVPEEDTYDFFVA-ARQLLKGYFQMEN--PQG 118

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID-PQ 936
             +     +     +   G+ + GF DR+D   +G V + DYKTG  P            Q
Sbjct: 119  FDCQETEMYVNTVLP-NGVPVRGFIDRVDRAPTGEVRVVDYKTGKKPLPR--YSHDAQFQ 175

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            +   A              ++  L Y+++     +     +          E   ++L E
Sbjct: 176  MRFYALVYWR--ILGTIPHQL-RLMYLKVLDSMFLTPNREE---------LEYFERDLGE 223

Query: 997  IVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            +   ++   +      + S+       +  L 
Sbjct: 224  LWAKIEADGRAGDFRPKPSK-LCGWCAHQDLC 254


>gi|322437047|ref|YP_004219259.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
 gi|321164774|gb|ADW70479.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
          Length = 929

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/521 (10%), Positives = 130/521 (24%), Gaps = 72/521 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           ++   +        ++P     +     T +A +E+     +I G  S   P + +    
Sbjct: 36  VITHRIAYLIEERGVSPDA---ILAVTFTNKAAKEMAERVDKIIGHSSLAKPTLSTFHSF 92

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                  D+     L      + R   +       +  +   +K L  +     P     
Sbjct: 93  CVRVLRRDIEA---LQVGGKGLTRTFAIYDETDQ-QAVVKSALKRLGIDDKSLKPRVALG 148

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
            I  AK                ++                   +    + + + L + NA
Sbjct: 149 RISWAK----------NHMIDPQEYFLASTNPLEEK-------IAHIFEIYKKELNKANA 191

Query: 205 SSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  +  +R                  ++I     +      LM  +A       V+
Sbjct: 192 LDFDDLLLETVRLLKSSGETRARYNRRYQYVMIDEYQDTNKPQYELMKLLAGDHKNICVV 251

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       W     K+      +                               +  
Sbjct: 252 --GDEDQSIYSWRGADIKNILDFEKDFPA--------------------------VQTIR 283

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
           +                   +NT      +   ++  S + L EA +   EA+ IA  ++
Sbjct: 284 LEQNYRSTQMILEGASAVVAQNTQRKGKNLWTAREGGSLIGLYEAPDGENEALFIADRIK 343

Query: 380 MSLDENKKK-------SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
             L E  +         A++    + +R V+  L R+ I   +  G           + S
Sbjct: 344 KYLREAGQTETEEPARCAVLYRTNSQSRLVEEALRRYQIAYHMVGGFSFYDRAEVKDILS 403

Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            +  +   +D +A+   V  P    G                             +   +
Sbjct: 404 YMKLVQNPHDSVALGRSVNSPPRGIGKTTMETLERMALT--------TGMSTWDAIARAI 455

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
            +++   +    +  ++  + +    L     + + + +  
Sbjct: 456 EEKLLPARALQALSGFKRLIEDARAMLGPGFAEKLAEDVEA 496


>gi|125622885|ref|YP_001031368.1| ATP-dependent nuclease subunit B [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|251764602|sp|A2RH76|ADDB_LACLM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|2909715|gb|AAC12965.1| exonuclease RexB [Lactococcus lactis subsp. cremoris MG1363]
 gi|124491693|emb|CAL96611.1| ATP-dependent nuclease subunit B [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300069623|gb|ADJ59023.1| ATP-dependent helicase/deoxyribonuclease subunit B [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 1099

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 75/239 (31%), Gaps = 24/239 (10%)

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            LD  + +D          P     +       S S  ++  N  Y  +    L L+   
Sbjct: 728 LLDLAKDIDTVN-----LAPDTLEQIYGDKIYASVSSFERFYNCEYQYFLENTLSLETFE 782

Query: 798 HFKKDPDRTDRGTLFHNIITELIKK--RINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
           +     +    G  FH +  +++K+     +N  E   L+ Q +D ++ +          
Sbjct: 783 NID--INSKIVGNFFHEVFEKVMKETDLSAENFDEKLTLVLQEVDKNYSRYFTQDATARF 840

Query: 856 WRHLFHKISHSFLEHEEKIQS--SIEKIFVNIPAKMA------IESIGIHLTGFADRIDL 907
                 +I        +   S   ++ +       +            I+L G  DR+D 
Sbjct: 841 TWSNLEEIVRQTATVLKATVSTDELKTLLTESSFGLPKSELGNFSVDDIYLRGRIDRLDQ 900

Query: 908 LKSGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
           L + ++   DYK+      +   A   +  Q       +K         +K+    Y++
Sbjct: 901 LSTDYLGAIDYKS-SAHSFKLQEAYDGLSLQFMTYLDVIKQ----AFPNQKIWGALYLQ 954


>gi|323138129|ref|ZP_08073202.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC
            49242]
 gi|322396591|gb|EFX99119.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC
            49242]
          Length = 1145

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 85/842 (10%), Positives = 198/842 (23%), Gaps = 100/842 (11%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA----SKYWTERLVELNASSPVG 209
             +++ +E E  +   L   +         +A   L  A              L+    + 
Sbjct: 316  GLLERMEEERDRLAPLIEKRKAAATAERSMALMTLGDAIVTEYSRAKRYRNLLDYDDLIE 375

Query: 210  YQIALMRAEAEHL----MKGTKGPIIIAGSTGSIPATARLMSTVAN--------HPNGAI 257
                L++  +       +      I++  +  +  A   +++ +A+              
Sbjct: 376  GARRLLQRSSPSWVLYKLDSQIDHILLDEAQDTSAAQWDILTAIADEFCAGDGARHMART 435

Query: 258  VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
                 D       +     +  +    +          L + +  L   R     L  V 
Sbjct: 436  FFAVGDEKQSIFSFQGAAPEKFDAMRRDFERRFRTVERLFRDVRLLQSFRSAKGILEAVD 495

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKI-------------PNIQKCFSDVALIEA 364
                        +  P            + +                       +  +E 
Sbjct: 496  MVFGHAGNGAGLASDPLAGMPKHEAWKTDVQALVEIWEPIGSQNAEEPADWRLPLDYVEE 555

Query: 365  DNEREE-AISIAIALRMSLD----------------ENKKKSALITADRNLARRVKLELT 407
            ++  E  A  +A  ++  L                 E      L+         +   L 
Sbjct: 556  NDPAERLAGRVARKIKTLLAPDSGECVEDKGRLRPVEAGDILILVRKRGPFFEALIRALK 615

Query: 408  RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
               + +  +  + L+  +  + L +L  A   + D + +AT++K PL  F   +      
Sbjct: 616  AEHVPVAGADRLDLADHIAVNDLVALGRAALLVEDDLTLATVLKSPLIGFDDDDLISLAP 675

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
            +    L +   N            +               +  R+         L+    
Sbjct: 676  RRTGSLFSALKNSGDERHRHAAQTID-AWRRDAATLAPFDFYGRILGPGGGRTKLVARLG 734

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
             +    +  +     +     + S                          E    ++   
Sbjct: 735  AEANDAIDEFLRLALTFEREQAPS------------------LTSFLAMVETLDLSIKRD 776

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
                      + A+A + ++     +      P  +    LF LG  +   L +      
Sbjct: 777  MEAAGAAVRVMTAHAAKGLEAKIVFLPDTCGAPAGKHDPKLFRLGEDDDVSLVWSLDKAS 836

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
                                + +        +        +         +Y  +    +
Sbjct: 837  D----------------PAALGAARARHRDAERAEHQRLLYVALTRAEERLYI-AGYHGS 879

Query: 708  IPTIASRWLQRLLVLGGTD--FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--PPL 763
                   W   +          F +  +     L                R      P  
Sbjct: 880  RGPADGCWYNAIRDALEPACNAFADPFEPEGAILRLGEVPPRHDLARTVARESLVEIPAF 939

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                          L        A            ++D +R   G L H ++  L    
Sbjct: 940  AHTAARREIDPAPPLRPSSALAGADAFASGAAAAPNRRDAERVLEGRLTHALLQHLPTCA 999

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
              +        +          E L         +   + + + +E          +   
Sbjct: 1000 EPRRRAAAERFL------ALRGEGLDDARR----NAIAQAALAVIEDPGLADLFGPQSAA 1049

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
             +    A++  G+ ++G  DR+   ++  V I D+KTG   +     +L   QL+L  AA
Sbjct: 1050 EVDIVAALD-NGLFVSGRIDRLAETEN-EVLIADFKTGRAREAPEPDQLR--QLALYRAA 1105

Query: 944  LK 945
            + 
Sbjct: 1106 IA 1107


>gi|327441306|dbj|BAK17671.1| ATP-dependent exoDNAse beta subunit [Solibacillus silvestris StLB046]
          Length = 1239

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 79/827 (9%), Positives = 205/827 (24%), Gaps = 104/827 (12%)

Query: 190  IASKYWTERLVELNASSPV--GYQIALMRAEAEHLMKGT------------KGPIIIAGS 235
              S+ + +   E          +    +  + E                     +++   
Sbjct: 363  EYSEAFKKAKQERGLLDFSDLEHYALEILTDEESTSNPPLPSDVALNFQKRFKEVLVDEY 422

Query: 236  TGSIPATARLMSTVA-NHPNGAIVLPGLDCHIPTAIWNTITEKSTN----ITSSNTTYST 290
                     ++  V         +    D       +     +           + + + 
Sbjct: 423  QDVNFLQETILQLVKNGGEQDGNMFMVGDVKQSIYAFRLAEPRLFLDKYKRFEEDPSGTG 482

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
                  A      ++          + +E  G      ++ L    S       +E  + 
Sbjct: 483  MKIDLNANFRSRSEVLEGTNYVFEQIMDEEVGEIAYDEQAKLKFGASYDEQQVPIELVLL 542

Query: 351  NIQKCFSDV-------ALIEADNEREEAISIAIALRMSLDENK---------------KK 388
                    +             + ++EA  I   +R  +D                  + 
Sbjct: 543  EGDSKAQIIPGSEEGSEEESISSAQQEARYIIQRIRDLVDRGGQVYNPKTKSMRPVSYRN 602

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
              ++   R        E    G+ +          +L   I+ + L  I      + +A+
Sbjct: 603  IVVLMRSRTWYTTFAEEFKLAGLPLYAETDGGYFESLEVMIMINTLKVIDNPYQDIPLAS 662

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            +++ P       E    R  N          +   +       +       K  T    W
Sbjct: 663  VLRAPFIGLTENELAKIRLINGKVPFYEALKQYKEEATG-DMPIETEAKLDKFFTMHQKW 721

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
            +           V  V         +      K       ++ D                
Sbjct: 722  RQFSRHGALADLVWQVYLDTNYYEMVGAMANGKQRQANLRALHDRALSYEKSSFRGLFRF 781

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP-------- 620
             R +  +    +   ++   S+  +  + +  +  + ++     + G +           
Sbjct: 782  LRFIDRMNSRGDDLGIAKSTSEADDVVTLLTIHKSKGLEYPVVFVAGMSRNFNTKDLGSR 841

Query: 621  ----------KIEKSSTLFILGTLESRL--------------LNFDTLILGGLNEGVWPK 656
                          +  L I+ T    L              +    + +    E +   
Sbjct: 842  YIFDQDFGLAIKSVNPDLNIISTSLPHLYVKEKKLAKMKAEEMRVLYVAMTRAKERLILV 901

Query: 657  NTAKNP------FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
             + K+       +       +  L    +    +   +      RH  +  +    +   
Sbjct: 902  GSIKDWEKQKEEWAFYQELEETVLPAYIRSKANSYLSWVGPAVARHNDFLFADYGYSNEA 961

Query: 711  IASR-WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK-QPHYKRPKPFPPLEAQPR 768
              +  W  R++        +  +   Q  ++     +        +  P P+     +  
Sbjct: 962  ATTEKWTVRIIPNRDYLLANEAETVEQEVVEQAVNEELVELLTKRFTTPYPYANAVTKKS 1021

Query: 769  TYSFSEIKQLINDP-------YAVYARRILKLDFIPHF-----KKDPDRTDRGTLFHNII 816
              S SE K+L +         Y + A+R +K D          ++    T+ GT  H ++
Sbjct: 1022 KTSVSEQKRLESLQQMEEEQLYNMEAKRYVKTDVPSFMLKGKKERKLSATEVGTAVHAVM 1081

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
              + ++    +  E    ++ +++    ++     +         K+   F         
Sbjct: 1082 QHIPQQGFA-SIEETKQYIQSLVERQLLQQIEADAVSA------EKVFAFFETEIGGRFK 1134

Query: 877  SIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKT 920
              +++    P  +++   E     + G  D I   + G   + DYKT
Sbjct: 1135 KAKQVLREEPFTLSLKDQEGDAQIIQGVIDCIFEDEHGNWVLLDYKT 1181


>gi|254725483|ref|ZP_05187265.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A1055]
          Length = 1241

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 92/899 (10%), Positives = 212/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVKYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 927

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 928  APSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      +   K       +       + S   +                ++ +    R 
Sbjct: 988  EKKAVPLESERKEEVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIQTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEILQEQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKS 1218


>gi|290242989|ref|YP_003494659.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
 gi|288945494|gb|ADC73192.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
          Length = 704

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 81/695 (11%), Positives = 188/695 (27%), Gaps = 82/695 (11%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST-ILPIIKS 80
             A    TL E       +     ++ +   +++A +E+ +   +    +    LP I++
Sbjct: 27  AGAGKTATLTERTARMLESGHHPENLLMLTFSRKAAREMYARLRDRLDTQDRKALPTIEN 86

Query: 81  LGDVVEEKFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
                 +   ++       +    +    +  EL RL     +        +     +  
Sbjct: 87  FHSFGWKLLQSNPTRCQRKSGVSLMDANDQKKELRRLHKDLADDAFREDVPVKKLMTVHD 146

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY--GMWWLLAADFLKIASKYWT 196
            +S    I L    A   D         + + AL   +      W    D L+   +   
Sbjct: 147 VLSNEGII-LGDQYARTGDENPERR---QRIMALLTAQGIRRAHWGRLNDILRRYEEN-K 201

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMK--GTKGPIIIAGSTGSIPATARLMSTVANHPN 254
                ++    V    A + A  E   K       I +  +  +      ++   ++H N
Sbjct: 202 RMANTVDFGDLVALPAAGLSAYPEWAAKLEERFTHIAVDEAQDTNRIQYAMLRLFSSHNN 261

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             +V    D       W      +       T        ++ +L          V    
Sbjct: 262 VIMV---GDDDQCIYEWRGAAPSNLRTFRDETE------AAIVRLERNYRSTPSIVSAAA 312

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                   R                      +   P+ Q+    VA+         A +I
Sbjct: 313 RHIACNQTRIEKS-----------PYAEGRADGDPPDGQQHPDGVAM---------ANAI 352

Query: 375 AIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
           A  +R ++D   + K+ A++     +AR ++  L   GI   I+ GI +  T  + +L  
Sbjct: 353 AQDIREAIDSGISPKRIAILYRVNKIARVLEPALIARGIPYHIAQGIDVFQTPEAQLLMG 412

Query: 433 LLNAIFKLNDFMAI--ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            +  +    D MA      +   L +    +       + L ++  R +          +
Sbjct: 413 AVRLVQNPQDSMAATKLAQLVKGLGERSLNDMIGYSVIHDLPILECRQHVKLSKPAFAAA 472

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
             L ++          +      + +       +  + +      T    +      +SI
Sbjct: 473 ERLSQMIDGLAQWPPLYLAEWALDPEMGGFQDTLKELSKTADKPKTM--YERRLTTIMSI 530

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
            +  +           D        W   +   L++   +                    
Sbjct: 531 EEAIQGRFGTSDQGKADAEYSRSEQWEIVQELALAAPDEE-------------------- 570

Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
                        +   + +      + L + T+ + G+++G+ P   + +         
Sbjct: 571 ------------AEQDAVTVATVFRVKGLEYHTVHIAGMSDGLMPMRRSSDKPPMFDEDE 618

Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
           D   +  E+    +   +  A   R  +       
Sbjct: 619 DEAAQNVEEERRLS---YVAATRARERLVVHHADR 650


>gi|260199970|ref|ZP_05767461.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T46]
 gi|289442365|ref|ZP_06432109.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46]
 gi|289415284|gb|EFD12524.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46]
          Length = 769

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 89/732 (12%), Positives = 189/732 (25%), Gaps = 99/732 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R   + + G+K+  +  + +              L   LN   S
Sbjct: 68  GQILAITFTNKAAAEMRERVVGLVGEKARYM-WVSTFHSTCVRILRNQAALIEGLNSNFS 126

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+ +    L   IK   P                   LA+ I  ++ E  
Sbjct: 127 IYDADDS-RRLLQMVGRDLGLDIKRYSPRL-----------------LANAISNLKNELI 168

Query: 165 KW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----- 218
              + L  L  +         A  +      +  RL   NA          +        
Sbjct: 169 DPHQALAGLTEDSDD-----LARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQ 223

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH------PNGAIVLPGLDCHIPTAIWN 272
                +     +++     +  A   L+  +         P G + +   D       + 
Sbjct: 224 IAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCV-VGDADQSIYAFR 282

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             T ++            +P      L       +  +    +V     GR         
Sbjct: 283 GATIRNIEDFE-----RDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRR-------- 329

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKS 389
                        E ++         +    ADNE +EA  +A    AL    +      
Sbjct: 330 -------------EKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDV 376

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A+     N +R ++  L R GI   +  G+          + + L  +    D +++  +
Sbjct: 377 AVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRI 436

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
           +  P    G   +                   +        +   +      NT      
Sbjct: 437 LNTPRRGIGDRAEACVAVYAEN----------TGVGFGDALVAAAQGKVPMLNTRAEKAI 486

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
           +   E   EL   L D + + +  ++     +     +    +  +L             
Sbjct: 487 AGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARL------------D 534

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                +    E  T         E G        ++++ ++ + D + +         + 
Sbjct: 535 NLNELVSVAHEFSTDRDGPRWTSEAGRPDTGVLADFLERVSLVADADEIPEHGA--GVVT 592

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
           ++    ++ L F  + + G  +G++P   A +       +  L      +   +      
Sbjct: 593 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITR--ARQRLYVS 650

Query: 690 MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
            A         RS     +    SR+L+ +            K      +    +     
Sbjct: 651 RA-------IVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSAR 703

Query: 750 KQPHYKRPKPFP 761
             P        P
Sbjct: 704 PSPTRSGASRRP 715


>gi|89094046|ref|ZP_01166990.1| exodeoxyribonuclease V, 125 kDa subunit [Oceanospirillum sp. MED92]
 gi|89081720|gb|EAR60948.1| exodeoxyribonuclease V, 125 kDa subunit [Oceanospirillum sp. MED92]
          Length = 1092

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 105/963 (10%), Positives = 246/963 (25%), Gaps = 123/963 (12%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSL 81
           +L   L E  R DP++   +A   I V +    Q L+ E  + +G  ++I   LP     
Sbjct: 12  VLKDLLTELIRRDPISDPFVAE-QILVQSPGMAQWLKLELADKSGIAASIDFPLP----- 65

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
              + + F+  L       P  S   +     +L+ +    L   +     +  L+    
Sbjct: 66  ASFLWKHFSEVLPD----VPERSAYNKEAMSWKLMAVLPAMLKQPVFSALQQ-YLADDDD 120

Query: 142 PANAIWLAKNLADIIDIIETEEKKW--EDLHALKNEKYGMWWLLAA-DFLKIASKYWTER 198
                 L   +ADI D        W  +             W       LK  ++   + 
Sbjct: 121 RFRLYQLCNKIADIYDQYLVYRPDWIEDWEQGGDIAAARHPWQPVLWRELKSYTEDLQQ- 179

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT-----KGPIIIAGSTGSIPATARLMSTVANHP 253
                      ++  +  A  + L   +        + + G +         +  +    
Sbjct: 180 --------SHWHRANMFSAFVDGLKNPSAAEKLPRRLFVFGISALPQNYVHALQALGKRI 231

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL-AKLLDFLDIKREDVKR 312
           +  +++     +    I +       N    +        Y+    LL  +     D   
Sbjct: 232 DVHLMVMNPCRYYWGDILDQSQIARLNRRWFSKPDLDFSDYAEGNPLLASMGKLGRDYLY 291

Query: 313 LGNVSN-------EMYGRSMVISKSFLP----PDTSDMRNTDILENKIPNIQKCFSDVAL 361
               +            R  ++S          + + +       +    + +    + L
Sbjct: 292 QLQDNALDEIDAYADPERGSLLSAIQQDILDLENPTRLPEQIDNSHGKHRLDREDRSIEL 351

Query: 362 IEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGIN 412
               +   E   +   L    ++N     +   ++  D          +         I 
Sbjct: 352 HSCHSALREIEVLHDQLLDMFEKNPLLKPRDVIVMMPDVAAYAPYIEAVFANAPAERYIP 411

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG--FPEKYLSRAKNA 470
             IS                +L           +  L++ P         EK   + +  
Sbjct: 412 YSISDRSNRQENPLLLSFEKILKLNSSRFTVSDVLELLEVPAVMRRVGLDEKSFQKLRFW 471

Query: 471 LELVALRGNKN--SYDIMDLKSLVLDRIATQKNNTHVPHWQ-----SRLSEEDKELAVLL 523
           ++ V +R   +     I +L     +          V +                    L
Sbjct: 472 VDQVNIRWGMDSEQRSIWELPLFEQNSWRFGIKRMLVGYALGEGSEYWQGVAPYTEIEGL 531

Query: 524 VDHILQCITPLVTYKTNKN-STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
              +L  +   +            +   S W ++    L+N    + +   +L      K
Sbjct: 532 ESELLGKLAGFIDLLDETRLHFTQDHEFSTWIEVINQILENYFTADEQDEISLNT--IRK 589

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
           TL  L  ++ +       +       +   I+ +    +     ++     +  R + F 
Sbjct: 590 TLQGLQEQLKDANYSQALSPSVIAHYLIDGINQQRSSQRFM-VGSVNFCTLMPMRSIPFS 648

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF--EMANGTRHLIYT 700
            + L G+N+G +P++     F    + +D   +          + F   + +    L  +
Sbjct: 649 VVCLLGMNDGTYPRSIPPVGF---DLMTDYPRRGDRSRRDDDRYLFMEALLSAQEKLYIS 705

Query: 701 RSLRE--NNIPTIASRWLQRLLVLG------GTDFFDNLKKRGQCYLDWTRKLDY----- 747
              R   +N   I S  +  LL           D   +    G+      +         
Sbjct: 706 YIGRSIRDNNEKIPSVLVSELLDYAEQGYVLEGDEELSCSNSGEKLRAHIKTQHPLVAFS 765

Query: 748 -------------TTKQPHYKRPKPFPPLEAQPRTYSFSEIK--------QLINDPYAVY 786
                         ++     + +            +   +           + DP   +
Sbjct: 766 PEYFKSAGDYFSFASEWLPAAQAESRAAEVFLTEDLTSEALPELELKQLISFLRDPCRSF 825

Query: 787 ARRIL----KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
               L        I    ++P   D  + +      L     +++   ++  +       
Sbjct: 826 FNNRLKVYFGNSEIEAQDEEPFSLDNLSSYLLKQRYLQSALQDRDLERLDKAILAEGRLP 885

Query: 843 FEKENLPPH--IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
             +        +      L  K+            S           ++ +    + L G
Sbjct: 886 LARAGELNLNKLRHDSLELAEKLKP---------LSEGTP----QRIEINLSIGEVKLQG 932

Query: 901 FAD 903
           + D
Sbjct: 933 WLD 935


>gi|325690487|gb|EGD32490.1| exonuclease RexA [Streptococcus sanguinis SK115]
          Length = 1224

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 98/958 (10%), Positives = 239/958 (24%), Gaps = 123/958 (12%)

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            +L  +        +  +  +   +  + +L               ++ K++  +   +  
Sbjct: 276  ALTALAGLNELPSIEETAQILKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNEARK 335

Query: 140  ISPANAIWLAKNL--ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                      + L   D I+  + E     +L                DF+   ++ + E
Sbjct: 336  PMIERLRSFDQQLYQLDFIEQHQDECLPLVEL--------------LRDFVADFAQAYLE 381

Query: 198  RLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            R    NA          +             +     +++     +     R++  ++  
Sbjct: 382  RKKAENAFEFGDISHFAIEILERFPEVHRFYQERYHEVMVDEYQDTNHTQERMLDLLSR- 440

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDI 305
              G       D       +     +  +            Q             L+ L+ 
Sbjct: 441  --GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKLIVLKENFRSHLEVLEA 497

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ----KCFSDVAL 361
              +  KRL +        +         P   +    +     I        +  +D  L
Sbjct: 498  TNDVFKRLMDEEVGEIDYNETHYLVAGNPAKREPNPANRASFLIYEGSKESLEEEADEGL 557

Query: 362  IEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
             +A +  E  + I   +R+  +E    K   L+TA R     +     +  I +    G 
Sbjct: 558  PQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLILAAFEQHQIPLVPDDGA 617

Query: 420  P-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
                 ++   ++   L  I    +  A+  L+K P+  FG  E      + + E      
Sbjct: 618  ANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQEHSQENL 677

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP----- 533
             +   + ++ + L    +  +         ++            L D I +         
Sbjct: 678  YEKFVNALEGRGLHPALVTQELQKKLQHFHETLQDWRTYSKTHSLYDLIWKIYQDRFYYD 737

Query: 534  -LVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             + T            ++S    +   +  + +          L  + +    S   +  
Sbjct: 738  MVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDL--ASVPVAAP 795

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL--LNFDTLILGGL 649
             +    +  +  + ++     +         + SS+  IL   +        D  +    
Sbjct: 796  KDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVSVED 855

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI----------- 698
                     + +    +   ++L L +  + +         A    +L+           
Sbjct: 856  PYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEALDKR 915

Query: 699  ---------YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD--------- 740
                      + SLR          +  + +       ++      +             
Sbjct: 916  QWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRINEP 975

Query: 741  ---WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAV--YARRILKLD 794
                   L    +    +R         +  +   S I+   +  P  +  +   I+  D
Sbjct: 976  LFFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIMDTD 1035

Query: 795  FIPHFKKDPDRT-------------------DRGTLFHNIITELIKKRINKNTPEINHLM 835
             +    +                          G+  H ++  +            + L 
Sbjct: 1036 GLDIMDERAAFRPQPNFDLPDFGKKAKVTGAQVGSAVHELMQRIPLDSSPSMAVLRSALT 1095

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM----AI 891
            +   D   +K+   P I   +     ++             + +++    P  M      
Sbjct: 1096 QVQADEAVKKQIQLPKIASFFETDLGRLL----------IENSDRVRREAPFAMLKRDDA 1145

Query: 892  ESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
                  L G  D   +       + + DYKT               QL L A AL   
Sbjct: 1146 SGQNFVLRGILDGYLLFED---RIILFDYKTDKYKDSSELIARYCGQLDLYAQALSRS 1200


>gi|320095789|ref|ZP_08027433.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977273|gb|EFW08972.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 267

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 76/260 (29%), Gaps = 35/260 (13%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S S+ +  +  P   +   I                  GTL H+I         N    
Sbjct: 31   LSPSQFESALQCPLRWFLTTIGADGP------GTAAQSLGTLVHDIAER----HPNGTRE 80

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
            ++   + + I                       +  +   +            V++   +
Sbjct: 81   QLRAALDERIGELGYDLGTWAGRRDHAHAY--AVIDNLASYMA-----GVPGAVDVEGTV 133

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS 948
            A    G+ + G  DR++ +  G V +TD KTG      ++     +PQL+    AL A  
Sbjct: 134  AANVEGVTIRGRMDRVEHV-DGGVRVTDIKTGRYGYTAKSV--PDNPQLAAYQMALIALE 190

Query: 949  FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
               +  R       I L    K       ++ +    L  ++L      V  +    +  
Sbjct: 191  QPVVGGR-------IALVGGDK-------ERVFDQPALHGEALDEWRAAVRRVGEAARGP 236

Query: 1009 ISHLRLSEKSNIQSEYDHLA 1028
                  SE +     +D L 
Sbjct: 237  SFRATPSEAACRFCSFDRLC 256


>gi|154249213|ref|YP_001410038.1| hypothetical protein Fnod_0518 [Fervidobacterium nodosum Rt17-B1]
 gi|154153149|gb|ABS60381.1| hypothetical protein Fnod_0518 [Fervidobacterium nodosum Rt17-B1]
          Length = 1077

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 84/673 (12%), Positives = 185/673 (27%), Gaps = 80/673 (11%)

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
           N ++  ++  + N+A R+  E    GI    S   PL+ +    IL   L  I +     
Sbjct: 319 NPEEVGIVVPNTNIAYRLMDEFDEAGIPYRYSGKNPLTESHIIKILLQPLLTIEEGYRPE 378

Query: 445 AIATLVKHPLAKFG---FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
            +  +++ PL +       E      +     + ++ ++        K+           
Sbjct: 379 DLLAVIESPLVEKRELTMDEIEDLFKEYEYYSIRMKPSEMRNKEDRRKNFFEKLERDIAE 438

Query: 502 NTHVPHWQSRLSEEDKELAVLL--VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                       +        L  +    + +  L     N +   G+    +W K  + 
Sbjct: 439 LESKKEEYDIEEDVYLSSVERLEKLKKFKEIMEELFGLLDNIHENWGSKDFFEWYKEFIK 498

Query: 560 CLQNVCLDEHRKLPNLWFE------------------EEGKTLSSLFSKIIETGSCIKAN 601
                  D       +  +                       L     K+ E+      +
Sbjct: 499 SSILKFGDILENYEIMSSQKSVIRSVGKEINALSKFINVLNKLEIYVQKLRESKLSKVTS 558

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
             +   +   L++    +   + ++ + I+    S+ +           +  +P     N
Sbjct: 559 WSKLFKLFVVLLNSNGYRETFKSANVVDIIDIPTSKFVKKKYKFFVDFIDDYYPSIGKIN 618

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
           P L R       +    +   +++    +       +          P + S++L  L  
Sbjct: 619 PLLYRTTNQRSRIYDLLEESERSSVFLSIIFSQNSYLIFPKSTNTGDPLVPSKYLSELAH 678

Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                   +     +   D  +     ++    KR + F   E+    +S S I   ++ 
Sbjct: 679 NHIEAKISSDDIFKKIDYDIYKLAQSASQIIEVKR-EDFVVGESNITEFSHSRIATYLSC 737

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-----------KRINKNTPE 830
           P   Y   I  L      K++      G + H ++ +L                +    E
Sbjct: 738 PMLFYYSNIATL--PEKTKENNLALMEGIITHRVLAKLFDINYPKNVYSLLNYNDGVLKE 795

Query: 831 INHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSF-------------------LEH 870
           +     +       K  +P  I               F                   L+ 
Sbjct: 796 LIEESAESFSEGIFKYKIPKKILSDEIFDKLSVYLREFADSKYLITLGQKSKTLPLRLDS 855

Query: 871 EEKIQSSIEKIFV-N---IPAKMAIESIGIHLTGFADRID--LLKSGFVDITDYKTGDNP 924
            +K +   + ++          +  E    H+ G  DRID  L +     I DYK     
Sbjct: 856 SKKSKEGTKDLYTDETLKTELSVECEVGRYHVIGRIDRIDKILDEENKYAIIDYK----N 911

Query: 925 KKETAQKLIDPQLSLE-AAALKAGSFSQI--------DCRKVANLFYIRLKQKFKIDCIT 975
              + +   + QL L     LK      +        +   V  L ++++ Q+       
Sbjct: 912 SLSSIR--FE-QLILYDYLILKDEKKENLLWKKEIKENGSHV-FLMFLKIGQEKLEYRYI 967

Query: 976 NDKKKYSADELSE 988
             + +     + E
Sbjct: 968 KKENQEEPVYIIE 980


>gi|309799181|ref|ZP_07693431.1| DNA-dependent ATPase I and helicase II, putative [Streptococcus
            infantis SK1302]
 gi|308117198|gb|EFO54624.1| DNA-dependent ATPase I and helicase II, putative [Streptococcus
            infantis SK1302]
          Length = 786

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/444 (12%), Positives = 130/444 (29%), Gaps = 65/444 (14%)

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNE-------GVWPKNTAKNPFLSRVMQSDLN 673
                S+ + ++    S+ L F+ + +   N+           +N +        +     
Sbjct: 55   SGSPSNCVQLMTAHGSKGLEFEHVFIMKCNDGKKKSESWPGGENNSGRFAYPPSLNGKDE 114

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLI-YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             ++  K        +      + ++  + S            ++                
Sbjct: 115  NESQLKEEENRRLFYVAMTRAKKVLHLSYSDDSTKTH-----FINEFEEFIDE------- 162

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                   +         +    K             + S S +   +  P + Y  + LK
Sbjct: 163  ---VDVTESFEDCQSVDEVVIPKFTNDVLNEIFDELSLSVSTLNAFLKCPLSFYLNKGLK 219

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI-------NHLMKQIIDSHFEK 845
            L       +  +    G++ H ++ ++          E+             + +S FE+
Sbjct: 220  LP-----SETNEAMVFGSIIHEVLEKIYISADGSQISELTSKTVLSLEEALALFESIFEE 274

Query: 846  ENL---PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-KMAIESI------- 894
            ++       I         +I  +   +++    +   I V IP   + +  I       
Sbjct: 275  KSYQLSSDRIKKDDYDRGIRIIENL--YKKAGYLNDGVIAVEIPIQGIRLGDILNTTVDL 332

Query: 895  ----GIHLTGFADRIDLLKSGFVDITDYKTGDN--------PKKETAQKLID--PQLSLE 940
                 I L G  D+I+   +  V + DYKTG+         P  E A    D   Q    
Sbjct: 333  SGISDIELNGKIDKIEYDGN-IVRLIDYKTGNAENGKKKLVPPSEKAPLGGDYWRQAVFY 391

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
               L   +   I  +++  + Y+ ++     D  +  +      +  +  L  + E +  
Sbjct: 392  -YILFKNAGINISDKEIL-VKYVFVEDSINEDGFSETEDIQITQKEVDIVLNQIKESIMK 449

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEY 1024
            ++ G+      L   ++ N   +Y
Sbjct: 450  IKQGDFNCGCGLLKKDRDNYPCDY 473



 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 95/300 (31%), Gaps = 41/300 (13%)

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD---------- 802
                   F       ++ S S++ + ++ P +VY   +L+L                   
Sbjct: 489  EALEIATFQQTRGNYKSLSVSKLNRFLSCPKSVYFDDVLQLSQPAGLSAGTKEKAAKVTT 548

Query: 803  ---PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
               P     GT  H  + ++ K+  +    E        + SH ++E +        +  
Sbjct: 549  KHAPTGPVFGTAIHETMEQIYKE--DLQLEEAIEYYDNSLHSH-QEEIIDTMSVEELKEY 605

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
             H++  +  +H   I    E +++    ++ +    + + G  D+++     F+ + DYK
Sbjct: 606  GHRLLTNLFKHYIPISLKGEHVYLEKELRVKLGDKHL-INGIIDKLEFDND-FIRVVDYK 663

Query: 920  TGDNPKK-ETAQKLID--PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI-- 974
            TG   +  E      D   Q       L+  S      +++    YI L           
Sbjct: 664  TGSTQRGVEELAVGRDYWRQAVFYNILLENSSEIDTTGKRIET-QYIFLDDDDAKVGYSI 722

Query: 975  -TNDKKKYSADELSEKSLKNLIEI-VTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
             T +  K   D +  K  K   ++ V     G                  +Y    R+ E
Sbjct: 723  HTVNVTKEDIDLVLTKIQKFWDKVNVADFTGG------------CGKDDCDY---CRLGE 767


>gi|258545647|ref|ZP_05705881.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
 gi|258519114|gb|EEV87973.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
          Length = 723

 Score = 88.4 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 67/719 (9%), Positives = 175/719 (24%), Gaps = 116/719 (16%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
           +     T +A +E+R        +    L  + +   +                     +
Sbjct: 57  LLALTFTNKAAREMRQRLEAALQRPLGQL-WMGTFHGICHRI-----------------L 98

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
           +R   L +    +     D    L      +     A      KN+   I+  + E  + 
Sbjct: 99  RRHALLMQWPEQFVIMDSDDQLRLVKRMMRARQWDEAVMKP--KNMVWQINAYKEEGLRA 156

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--- 223
           ED+       +          ++     + +   +          +  +     H     
Sbjct: 157 EDVP---PTPHPGELA-----IREFYHDYEKLCRQQGTMDFAELLLLTVELFTHHPEVLQ 208

Query: 224 --KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +     +++     +     RL+  +     GA +    D       W     ++   
Sbjct: 209 NYQQRFQSVLVDEFQDTNALQYRLVQQL--CAGGAQLFVVGDDDQSIYGWRGARVENILQ 266

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
              +                               +  +              +    +N
Sbjct: 267 LERDFPA--------------------------LATVRLEQNYRSTQTILDAANAVIAQN 300

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLA 399
           ++ L   + +  +  + V +  A NE +EA  +   ++    +  +  +SA++      +
Sbjct: 301 SNRLGKTLWSDGQRGAAVRIYPAINEMDEARYVCEHIQRWHADGGRYDESAILYRSNAQS 360

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           R  +  L +  +   +  G+            + L      +D  A+  ++  P    G 
Sbjct: 361 RVFEEMLLQHRLPYRVYGGLRFFERAEIKDALAYLRLARYRDDDGAVERIINTPTRGIGQ 420

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                 R                          +       ++  +    S  +      
Sbjct: 421 KTLADLRQLAQ-------------------QAGVPLWRILSDDAQIARHFSGRARNALRE 461

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
            V+L++ I   +    + K    +   +  +    +              +        +
Sbjct: 462 FVILIEQIAAKLAAEPSLKKALETVVHDTGLYAALE---------SEGSEQADARRENLD 512

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
           E     S      +  S          D +             E S ++ ++    ++ L
Sbjct: 513 ELINAGSYIDLSTDPDSDRIM------DFLVDAALDAGDGQAEEGSDSVQLMTLHSAKGL 566

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLI 698
            F  + + G+ EG++P   A              +++ +K   +    +       R L 
Sbjct: 567 EFPNVYIVGMEEGLFPTQRA--------------IESPDKLEEERRLAYVGMTRAERELT 612

Query: 699 YTRSLRENNIPTI----ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
              + R            SR++  +           +                T     
Sbjct: 613 LCFAERRRFQGQENYPQPSRFIHEIPEELTEAVRPMVYSGISKMRRMDSASPRTASPAA 671


>gi|261822630|ref|YP_003260736.1| exonuclease V subunit gamma [Pectobacterium wasabiae WPP163]
 gi|261606643|gb|ACX89129.1| exodeoxyribonuclease V, gamma subunit [Pectobacterium wasabiae
           WPP163]
          Length = 1132

 Score = 88.4 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 111/960 (11%), Positives = 234/960 (24%), Gaps = 124/960 (12%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
                  I V +    Q L+ E     G  + I      L  V        +L       
Sbjct: 28  DPFQQEVILVQSPGMAQWLQIELAGDFGIAANIQ---FPLPGVFLWNMCRHVLSDIPKES 84

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             S      +L  L+      L +          L    +      LA  +AD+ D    
Sbjct: 85  AFSKDAMTWKLMHLLP----DLLEQPDFSALNHYLQDDDNQHKLHQLAGRVADLFDQYLI 140

Query: 162 EEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
              +W        +        L    L  A   +T  L +             +    +
Sbjct: 141 YRPEWIKAWQEGKQVDDLGGNQLWQSALWRALVDYTRELAQPEWHH-AILYQRFINTLGQ 199

Query: 221 HLMKGTKGP--IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP----------- 267
                   P  + I G +   P   + ++ +A H +  ++      H             
Sbjct: 200 AKECPKGLPPRVFICGISALPPIYLQALNALAQHIDVHLLFTNPCRHYWSDIQDYKFLAK 259

Query: 268 -------------TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL- 313
                            +          +         Q     LL        D   L 
Sbjct: 260 LKARNRRLHRFDGEQTDDVRPLFRDLSQAETLFNDDGKQSINNPLLASWGKLGRDNLYLL 319

Query: 314 --------------GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
                          +  N +      I +       +    T     +   +      V
Sbjct: 320 AELDNVQEIDAFVESDGENLLQTLQRDILELEDCAVVAVSHETQNTSTQKRLLALDDRSV 379

Query: 360 ALIEADNEREEAISIAIAL----RMSLDENKKKSALITADRNLARRVKLEL-----TRFG 410
                 + + E   +   L        +   +   ++ AD +        +         
Sbjct: 380 DFHACHSPQREVEVLHDRLLAMMADDPELMPRDVIVMMADIDSYTPFIQAVFGNAPDNRY 439

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAK 468
           +   IS             + SLL+          +  L++ P    +FG  E+ L R +
Sbjct: 440 LPFAISDQRARHAHPALQAVISLLDLPTSRFTAEQVLALLEVPALAARFGIQEEGLRRLR 499

Query: 469 NALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
             +    +R   +  ++ DL        +                           + + 
Sbjct: 500 LWVVESGVRWGLDDDNVRDLMLPPTGQHTWRFGLTRMLLGYAMDSQVGDWQGVLPYDESS 559

Query: 522 LLVDHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
            L+  +   +  L+      +        ++DW  L    +      +      L   E+
Sbjct: 560 GLIAELAGQLAELLMQIHQWRQRLSQPRVLADWLPLCRELIDTFFDADSETEAALALVEK 619

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
                     +      +  +     D ++R +D E +  +     ++     +  R + 
Sbjct: 620 QWQYVIGMGTMARYPHLVPISR--LRDELSRRLDQERLSQRFLAG-SINFCTLMPMRSIP 676

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIY 699
           F  + L G+N+GV+P+      F   +M   +      +         E     +H L  
Sbjct: 677 FKVVCLLGMNDGVYPRTLPPLGF--DLMGRKIKRGDRSRRDDDRYLFLEALLSAQHKLYI 734

Query: 700 TRSLRENNIPTIASR---------WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
           +   R     T             ++ +  VL G +  D     G+      R+      
Sbjct: 735 SYIGRSIQDNTRRYPSVLVSELTEYIAQSYVLPGDEALDIDSSAGRVMKHLCREHSRMPF 794

Query: 751 QPHYKRPKPFPPLEAQPR--------------------------TYSFSEIKQLINDPYA 784
             +   P P P   A                             + S  ++K+    P  
Sbjct: 795 DANNFLPVPLPLSFAAEWLAAANRKGEAQPDFDREVLSEKTSDRSVSLDDLKRFYRHPVR 854

Query: 785 VYARRILK----LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
            + +  L     L       ++P   D    +      L       +T ++    +    
Sbjct: 855 AFFQLRLGVSFMLHSDELLDEEPFVVDSLNRYQLNSELLNTLINEGDTEKLYRRARAAG- 913

Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
                E        I+     +          +++  +      +  ++ I   G+ ++G
Sbjct: 914 -----ELPYGAFGEIYWQEQQQDMAQLAS---RVRDELTPTLS-MSREVDIILDGVRVSG 964


>gi|228957511|ref|ZP_04119263.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar pakistani str. T13001]
 gi|228802103|gb|EEM48968.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar pakistani str. T13001]
          Length = 1166

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 96/893 (10%), Positives = 214/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  ++        
Sbjct: 443  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVESGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KNDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLSDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 858

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             R       L + +IP     +     V    G         + +         +     
Sbjct: 859  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 918

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 919  LQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRAPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------IHLTGFAD 903
                  K+   F     K   + + +   +P  M + +              I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|229171886|ref|ZP_04299455.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus MM3]
 gi|228611596|gb|EEK68849.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus MM3]
          Length = 1166

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 91/899 (10%), Positives = 209/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E        P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENDEMKPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLDGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------------ 379
                         L       ++        E +  + EA  +A  ++            
Sbjct: 443  GASYPEGEDVAAELLCIQQTEEEVQDGEEGAEVEKAQLEARLMAQRIKAMVDSGYTVYDR 502

Query: 380  ---MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KTNEMRQVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + + +    
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSTFLKGAP 612

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 613  LEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 672

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 673  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 732

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 733  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 792

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 793  AEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWI 852

Query: 690  M--ANGTRHLIYTRSLRENNIPTIASR----WLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 853  APSLYRHRDSEMLLELGQGSIPGEIYEYDTNWKVEVVDGKTLLAPEPVQEEKQELLEALR 912

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      Q   K       +       + S   +                ++ +    R 
Sbjct: 913  EKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 972

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             +K       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 973  PIKTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITIEVLQEQIAGMVNKELL- 1026

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1027 -TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSDETIL 1085

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1086 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|220911705|ref|YP_002487014.1| ATP-dependent DNA helicase PcrA [Arthrobacter chlorophenolicus A6]
 gi|219858583|gb|ACL38925.1| ATP-dependent DNA helicase PcrA [Arthrobacter chlorophenolicus A6]
          Length = 837

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 74/710 (10%), Positives = 192/710 (27%), Gaps = 105/710 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD-----VVEEKFTADLLLSYNL 99
             +     T +A  E+R     + G ++ I+  I +        + +E     L  ++++
Sbjct: 115 GEILAITFTNKAAAEMRERIEALVGGRAKIM-WISTFHSSCVRILRQEAANVGLKSNFSI 173

Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
                ++       RL+      L    K   P++      +  N +  A + A      
Sbjct: 174 YDAADSL-------RLVTQVSKALDLDPKKFAPKAIQHKISALKNELIDADSYAS----- 221

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE--RLVELNASSPVGYQIALMRA 217
                               +    A+  K  ++   +   +   +  +   Y      A
Sbjct: 222 -------------DANYNDPFEQAVAEVYKGYTQRLRQANAMDFDDLIAETVYMFRAFPA 268

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITE 276
            AE   +     +++     +  A   L+  +     GA  +    D       +     
Sbjct: 269 LAESYRR-RFRHVLVDEYQDTNHAQYALVREIVGEGPGASELTVVGDSDQSIYAFRGADI 327

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++            +P+    KL       +  +    +V +    R             
Sbjct: 328 RNIVEFEK-----DYPEARTIKLEQNYRSTQNILSAANSVISRNPNR------------- 369

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALIT 393
                    E ++   +     +     +NE +EA  IA     L+   +      A+  
Sbjct: 370 --------PEKRLWTAEGEGHKIIGYVGENEHDEAQFIAKEIDRLQDEDNLRPGDVAIFY 421

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R ++  L R G+   +  G             + L  +   +D + +  ++  P
Sbjct: 422 RTNAQSRSIEDVLVRVGLPYKVVGGTRFYERKEIKDALAYLRVLVNPDDDVNLRRVLNEP 481

Query: 454 -LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
                   E  ++   +   +  +   + +     + +  ++ +             +  
Sbjct: 482 KRGIGDRAEGAVAALASRERISFMAAARRAEQAPAMATRSVNAVLGFVKLLDDLAEVAAG 541

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
           S     L  +L       +  L +  T+        ++++   +     Q          
Sbjct: 542 SGAAAALEAVLEQTGY--LAGLRS-STDPQDESRVENLAELVAVVREYEQENPEG----- 593

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
                     +L +   ++       +       DI   + + +       +   + ++ 
Sbjct: 594 ----------SLGAFLEQVSLVADADQIPDAPGADIDAAVAEAK-------RLGVVTLMT 636

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L F  + L G+  G++P   +                  ++   +    +    
Sbjct: 637 LHTAKGLEFPVVFLTGMEHGLFPHQRS--------------ATDPKELAEERRLAYVGLT 682

Query: 693 GTR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
             R  L  TRS   N           + L     +  +  ++       W
Sbjct: 683 RARKRLYVTRSEVRNMWGQSQYNPASQFLEEIPAELLEWKREGTSRQAAW 732


>gi|226360004|ref|YP_002777782.1| hypothetical protein ROP_05900 [Rhodococcus opacus B4]
 gi|226238489|dbj|BAH48837.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 301

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 77/270 (28%), Gaps = 30/270 (11%)

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
            +    S S        P     R + +L              +GT+ H  +  L      
Sbjct: 26   RRPALSPSRAGDFKQCPLLYRFRAVDRLPE-----APSRAQVKGTVVHAALETLFGLPAA 80

Query: 826  KNTPEINHLMKQIIDSHFEKENL------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
            +  P     + +        E        P      +      +  ++  ++ +  +  E
Sbjct: 81   ERVPARAVDLVRPSWERLLDEAPDLIDLVPVDQRESFLDEARSLVTAY--YQLEDPTRFE 138

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-QLS 938
                    +  +   G+ L GF DRID+  +G V + DYKTG  P      +     Q+ 
Sbjct: 139  AESCEQRVETELAD-GVLLRGFVDRIDVAPTGEVRVVDYKTGRAP--REMSESKALFQMK 195

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
              A  L             A L  + L     +    ++ +    +       K +  + 
Sbjct: 196  FYALVLLR-----TRGIVPAQLRLLYLASGTVLTYAPDEDELLRFERTLSAIWKAI--LA 248

Query: 999  TLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
              +    +P  S L          ++  L 
Sbjct: 249  AGVTGDFRPKPSRL------CDWCDHKSLC 272


>gi|190576381|ref|YP_001974226.1| DNA-dependent helicase II [Stenotrophomonas maltophilia K279a]
 gi|190014303|emb|CAQ47950.1| putative DNA helicase II [Stenotrophomonas maltophilia K279a]
          Length = 730

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 71/722 (9%), Positives = 182/722 (25%), Gaps = 121/722 (16%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+R          S  +  I +   +                         
Sbjct: 60  VTFTNKAAGEMRHRIDAQLPNGSRGM-WIGTFHGLANRLLRLHWQD-------------- 104

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL------AKNLADIIDIIETEE 163
                       KLP+  + +  +  L L      A+ L      AK +A  I+  + E 
Sbjct: 105 -----------AKLPEGFQVMDSDDQLRLVKRVVQALELDDGKYPAKQIAWWINAQKDEG 153

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
           ++ + +    ++          + ++ A   +  R             +       ++  
Sbjct: 154 RRPQHIQPEPHD-------AWLETMRQAYIEYQARCDRAGLVDFAELLLRAHELLRDNPA 206

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I++     +       +  +A   +   V    D       W     ++
Sbjct: 207 LLSHYRARFREILVDEFQDTNAIQYAFVRVLAG--DSGHVFVVGDDDQAIYGWRGAKVEN 264

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +                            G  +  +       +      +   
Sbjct: 265 VQGFLRDFP--------------------------GAQTIRLEQNYRSTANILGAANAVI 298

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADR 396
             N D +  ++         + L  A NE +EA  I    R  + +     + A++    
Sbjct: 299 AHNPDRIGKQLWTDSGDGEPIDLYAAYNEMDEARYIVERARQWVRDGGSYTEVAVLYRSN 358

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  L    +   +  G+            + L  +   ND  A    V  P   
Sbjct: 359 AQSRALEEALLSEQVPYRVYGGMRFFERAEIKDALAYLRLLSNRNDDAAFERAVNTPTRG 418

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G       R +        R    S     +     + +A +  N            + 
Sbjct: 419 IGDRTLDEVRREA-------RAQGISLWEATMLVTQGNALAARARNALAGFLGLVNELQA 471

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
           + + + L + +   +      +     +  +L     T      +        R      
Sbjct: 472 QTVHMTLAERVDHVLARSQLREHWSKESRNSLDSESRTDNLDELVSVASRFVRRADDIEE 531

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             E+   L +  +                                      + ++    +
Sbjct: 532 VGEDMDELVAFLAYAALEAGEG---------------------QAQAGEDGVQLMTLHSA 570

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + L G+ +G++P   +              L+ + +   +    +      R 
Sbjct: 571 KGLEFPLVFLAGMEDGLFPSARS--------------LEESGRLEEERRLAYVGITRARQ 616

Query: 697 -LIYTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            L+ + +        +  ++ SR+L+ +      +    ++      +  +R + + + +
Sbjct: 617 KLVLSYAESRRIHGQDNYSLPSRFLREIPRELLHEVRPKVQVSRPASMGASRVMGHASIE 676

Query: 752 PH 753
             
Sbjct: 677 AP 678


>gi|30261249|ref|NP_843626.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames]
 gi|47526411|ref|YP_017760.1| ATP-dependent nuclease subunit A [Bacillus anthracis str. 'Ames
            Ancestor']
 gi|49184081|ref|YP_027333.1| ATP-dependent nuclease subunit A [Bacillus anthracis str. Sterne]
 gi|65318520|ref|ZP_00391479.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
            (contains helicase and exonuclease domains) [Bacillus
            anthracis str. A2012]
 gi|165873114|ref|ZP_02217732.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0488]
 gi|167640214|ref|ZP_02398480.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0193]
 gi|170688037|ref|ZP_02879249.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0465]
 gi|177655492|ref|ZP_02936935.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0174]
 gi|190566724|ref|ZP_03019641.1| ATP-dependent nuclease, subunit A [Bacillus anthracis Tsiankovskii-I]
 gi|227816013|ref|YP_002816022.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CDC 684]
 gi|229601554|ref|YP_002865672.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0248]
 gi|254682690|ref|ZP_05146551.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str.
            CNEVA-9066]
 gi|254734108|ref|ZP_05191821.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Western
            North America USA6153]
 gi|254753588|ref|ZP_05205624.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Vollum]
 gi|254758685|ref|ZP_05210712.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Australia
            94]
 gi|81583096|sp|Q81TW1|ADDA_BACAN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|30254863|gb|AAP25112.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames]
 gi|47501559|gb|AAT30235.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. 'Ames
            Ancestor']
 gi|49178008|gb|AAT53384.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Sterne]
 gi|164711168|gb|EDR16727.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0488]
 gi|167511815|gb|EDR87195.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0193]
 gi|170667932|gb|EDT18683.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0465]
 gi|172080091|gb|EDT65187.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0174]
 gi|190562276|gb|EDV16244.1| ATP-dependent nuclease, subunit A [Bacillus anthracis Tsiankovskii-I]
 gi|227003890|gb|ACP13633.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CDC 684]
 gi|229265962|gb|ACQ47599.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0248]
          Length = 1241

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 92/899 (10%), Positives = 212/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVKYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 927

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 928  APSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      +   K       +       + S   +                ++ +    R 
Sbjct: 988  EKKAVPLESERKEEVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIQTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEILQEQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKS 1218


>gi|49480014|ref|YP_035378.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
            konkukian str. 97-27]
 gi|81613917|sp|Q6HM43|ADDA_BACHK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|49331570|gb|AAT62216.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar
            konkukian str. 97-27]
          Length = 1241

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 86/899 (9%), Positives = 201/899 (22%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF------------------------DT 643
                 + G   +   +     F+L         F                          
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
                 +      +   K   +  V  ++  ++        +              Y   +
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREYSEWLLPDHIRAGASCYLDWI 927

Query: 704  RENNIPTIASRWLQRLLVLGGTDF-------FDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
              +      S  L  L      D        +      G   L      +   +     R
Sbjct: 928  APSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 757  PK-PFPPLEAQPRTYSFSEIKQL--------------------------INDPYAVYARR 789
             K   P    +        + +                            ++ +    R 
Sbjct: 988  EKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIQTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKS 1218


>gi|262202382|ref|YP_003273590.1| RecB family exonuclease-like protein [Gordonia bronchialis DSM
           43247]
 gi|262085729|gb|ACY21697.1| RecB family exonuclease-like protein [Gordonia bronchialis DSM
           43247]
          Length = 295

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 75/246 (30%), Gaps = 27/246 (10%)

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
              +P   S S        P     R I +    P          RGT+ H  +  L   
Sbjct: 27  HPGRPLALSPSRAADFKQCPLLYRYRAIDRFAETPTP-----AQTRGTVVHAALENLFDM 81

Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHI------DIIWRHLFHKISHSFLEHEEKIQS 876
                T E   L+ +       + +           +  +    HK+  ++   E     
Sbjct: 82  PAELRTQESADLLVEGAWGALCEADPDLARVVADVGESQFLADAHKLIATYYTMEN---- 137

Query: 877 SIEKIFVN---IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
                      +   + +ES  + L GF DRID+  +G + + DYKTG  P +    + +
Sbjct: 138 ---PTAFEADAVEHHVELESEQVRLRGFIDRIDVAPTGELRVVDYKTGRAPGEAFESRAL 194

Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
             Q+   A A+               L  + L    ++    +  +    +       + 
Sbjct: 195 -FQMKFYALAILR-----TRGVVPHRLQLMYLADGQQLTYTPDRDELERFERTLIAIWRA 248

Query: 994 LIEIVT 999
           + E V 
Sbjct: 249 IREAVA 254


>gi|91974519|ref|YP_567178.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
 gi|91680975|gb|ABE37277.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
          Length = 1115

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 84/797 (10%), Positives = 193/797 (24%), Gaps = 79/797 (9%)

Query: 169  LHALKNEKYGMWWLLAADFLKIASKY-WTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
            L A+  E            L     Y     L++ +        +     E    +    
Sbjct: 327  LAAIAGELLSRLCAEMQGLLLEWRDYKRDAALLDFDDLLFTARDLLAGHPEVRRALSQRY 386

Query: 228  GPIIIAGSTGSIPATARLM-------------STVANHPNGAIVLPGLDCHIPTAIWNTI 274
              +++     + P    ++             + +        +    D       +   
Sbjct: 387  RYVLVDEFQDTDPLQTEILWMICGEDCEGADGAPLKRPLRPGALFMVGDPKQAIYRFRGA 446

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
               +  + + +           A       I     KR   V +E  G+      S + P
Sbjct: 447  D-VNAYLAARSAVPQDARLAITANFRSVEPILAFVNKRFERVLSEEAGQPGFAELSPVRP 505

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK------- 387
               D      L+  +P      S +   EA    E    +   L++   E K+       
Sbjct: 506  PNGDAPAVVALDVTLPQGASGVSAIRDAEAAALAELCCRLVGNLQVHDPETKELRPCRLG 565

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
              AL+        R +  L   GI +   AG           L +L+  +    D +A+ 
Sbjct: 566  DIALLAPAGTELWRFEEVLEDRGIPVATQAGKGFFRRQEIHDLIALVRTLADPRDTLALG 625

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             L++ PL                                +L  ++            +P 
Sbjct: 626  ALLRGPLIGLTEN--------------------------ELLDIMEGLPVDPDRPARLPT 659

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                 + E    AV       + I  L   +     T     ++D               
Sbjct: 660  LTVGTNPEHIAHAVA-----RKAIENLQALRRRIRITTPYALLADAMSDFHVRPHLRQRF 714

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                   +   +     +  +             A    D      + +       +  +
Sbjct: 715  RTGAERAVANVDLFLEFARAYDVRGLRAFSRDMTAKWEDD------EDQAEGRPDAEEES 768

Query: 628  LFILGTLESRLLNFDTLILGGL------------NEGVWPKNTAKNPFLSRVMQSDLNLK 675
            + ++    ++ L +  +I   +            +      +            +   + 
Sbjct: 769  VSLITVHAAKGLEWPVVIPINMTGKPFAGGVLMQDRPNSRFSIPVLGTEPSDYAAMKTMN 828

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
              E+   +    +     +R L+     R   +P      L  L V              
Sbjct: 829  ALERDRERVRLWYVGVTRSRDLLVL--PRHTELPKECWATLVDLDVGALPAVDPESFGPA 886

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                      + T +    +  + F   E                +   +          
Sbjct: 887  GTRAARIEANEQTREIFAAEAGRIFAAREKIVWRQPSRSEVDGEGEKPDIRIDHSEPPGP 946

Query: 796  IPHFKK-DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                K        RG + H ++ E+I   + ++  EI      +      +    P    
Sbjct: 947  AEVEKPVVVGSAQRGVILHKLMEEIINGEVGEHMSEIESRAALLKQHLGIEPTAEPQPVE 1006

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV- 913
            +   +   ++   ++             + +   +A     + ++G  D + L  +G + 
Sbjct: 1007 LAATVLKTLALPAIKALRPRM----VAELPVFGSVAGADEEVLISGQVDVVALDDAGEID 1062

Query: 914  DITDYKTGDNPKKETAQ 930
             + D+K+  +P      
Sbjct: 1063 VVVDWKSDVDPSAAAVD 1079


>gi|284991128|ref|YP_003409682.1| hypothetical protein Gobs_2676 [Geodermatophilus obscurus DSM
           43160]
 gi|284064373|gb|ADB75311.1| conserved hypothetical protein [Geodermatophilus obscurus DSM
           43160]
          Length = 320

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 80/280 (28%), Gaps = 37/280 (13%)

Query: 742 TRKLDYTTKQPHYKRPKPFPPLE----AQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
              L  T +        P  P++     +  + S S        P     R I +L    
Sbjct: 6   AHGLSPTGQPADAAAASPNSPVDTTATPRRPSLSPSRAADFKTCPLLYRFRTIDRLPERK 65

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF-------------- 843
                     RGTL H+++  L      + T E    +                      
Sbjct: 66  SL-----AAVRGTLVHSVLERLYDLPARRRTAEAARELVAPAWEELRANPEVAALFTEGG 120

Query: 844 ---EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
              +     P     W     ++  ++   E    S IE        ++ +   G+ L G
Sbjct: 121 TGDDAAAEQPPSLEAWLASAGELVETYFSLE--DPSRIEPHGREELVEVTLPD-GLLLRG 177

Query: 901 FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-QLSLEAAALKAGSFSQIDCRKVAN 959
           + DR+D+  +G + + DYKTG  P    A +     Q+   A  L             + 
Sbjct: 178 YVDRLDVAPNGALRVVDYKTGSMP--REAFEGKALFQMKFYALVLWR-----TRGVVASQ 230

Query: 960 LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
           L  + L     +     + +    +   +     +   V 
Sbjct: 231 LKLLYLGNGDALTYAPEEAELVRFERTLQAIWAAIERAVA 270


>gi|170707635|ref|ZP_02898087.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0389]
 gi|170127410|gb|EDS96285.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0389]
          Length = 1241

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 91/899 (10%), Positives = 212/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   G+ +              +I+ ++   
Sbjct: 578  KTDSMRPVKYRDFVILLRSMPWAPQIMEELKLQGVPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 927

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 928  APSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      +   K       +       + S   +                ++ +    R 
Sbjct: 988  EKKAVPLESERKEEVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIQTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEILQEQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKS 1218


>gi|221234533|ref|YP_002516969.1| DNA helicase II [Caulobacter crescentus NA1000]
 gi|220963705|gb|ACL95061.1| DNA helicase II [Caulobacter crescentus NA1000]
          Length = 811

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 78/721 (10%), Positives = 179/721 (24%), Gaps = 116/721 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R     I G ++  L  + +   V  +                  
Sbjct: 95  EILAVTFTNKAAREMRERITHIIGPEAEGLRWLGTFHSVAAQI----------------- 137

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D  + L  +  L    +     W  + L+ IID  +     
Sbjct: 138 LRRHAELIGLKSNYTIIDTDDNERLLKQ--LIEAENIDAKRWTPRILSQIIDGWKNRGWT 195

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +   +  ++     ++        + + ERL  LNA       +  +     H    
Sbjct: 196 PDRVPTSEAGEFANGKGISL------YRQYQERLRILNACDFGDLLLHNISLFTGHPDVL 249

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     +  A    +  +A        +   D       W      +  
Sbjct: 250 DEFQQRFKYVMVDEYQDTNVAQYLWLRLLAQGRQNVCCV--GDDDQSIYGWRGAEVDNIL 307

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +      P   + +L          +     +     GR                 
Sbjct: 308 RFERDF-----PGAKVVRLECNYRSTEHILAAASGLITANKGR----------------- 345

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS--LDENKKKSALITADRNL 398
               L   +    K    V +    +   E+  IA  +  +        + A++      
Sbjct: 346 ----LGKTLWTPSKGGEKVKVSGVWDGEAESRLIADEIERAKKAGRKYSQMAILVRASFQ 401

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            R  +       I   +  G             + L  I   +D +A   +V  P    G
Sbjct: 402 MRAFEERFVLLQIPYKVVGGPRFFERAEIRDAHAYLRLIQSPDDDLAFERIVNTPKRGIG 461

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                       L  ++                                          E
Sbjct: 462 DTSVQKLLQIARLGGIST----------------------------------------VE 481

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            A  ++                        S+             +    +     L   
Sbjct: 482 AARQIITSDELPARTRTALSNFIRDLDRWRSLVGTAHHQRLLETVLEESGYTDALRLDKG 541

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
              +T      +++++          +++ ++ ++D      +      ++I+    ++ 
Sbjct: 542 PTSQTRLENLKELVQSMGAFD-TLEAYLEHVSLVMD----LDREATGDAVWIMTLHSAKG 596

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F  + L G  EGV+P   + +         D   K  E+    A      A     + 
Sbjct: 597 LEFPLVFLPGWEEGVFPSQRSMD---------DKGEKGLEEERRLAYVGITRAREEARIS 647

Query: 699 YTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
           +  + +        + SR++  L +       +     G   +  T    +        +
Sbjct: 648 FVANRQVYGRWTSQLPSRFVDELPIAHVDAASETGYYGGGPGMQSTAASRWDDPGTSAFQ 707

Query: 757 P 757
            
Sbjct: 708 A 708


>gi|215402404|ref|ZP_03414585.1| exodeoxyribonuclease V subunit gamma [Mycobacterium tuberculosis
           02_1987]
 gi|289744347|ref|ZP_06503725.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           02_1987]
 gi|289684875|gb|EFD52363.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           02_1987]
          Length = 1007

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 83/860 (9%), Positives = 203/860 (23%), Gaps = 56/860 (6%)

Query: 39  LNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS-LGDVVEEKFTADLLLSY 97
             P   A   + V  +   + L      + G        + + +     +   A++  + 
Sbjct: 25  PQPDPFAQELVLVAARGVERWLSQRLSLVLGCGPGRADGVCAGIAFRNPQSLIAEITGTL 84

Query: 98  NLNPPVSNIQRLLEL----ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
           + +P          L    A L   W   L   +         +          +A+ LA
Sbjct: 85  DDDPWSPEALAWPLLAVIDASLDEPWCRTLASHLGHFATTDAEAELRRGRR-YSVARRLA 143

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            +      +         L               L      W   +  + A  P      
Sbjct: 144 GLFASYARQR------PGLLAAWLDGDLGELPGDLAWQPPLWRALVTTVGADPPHVRHDK 197

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            +    +         + + G T       +L+  +A H +  + LP         +W  
Sbjct: 198 TIARLRDGPADLPA-RLSLFGHTRLACTDVQLLDALAVHHDLHLWLPHP----SDELWRA 252

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK-REDVKRLGNVSNEMYGRSMVISKSFL 332
           +               T  + +   LL+ L    RE  + L                  L
Sbjct: 253 LAGFQGADGLLPRRQDTSRRAAQHPLLETLGRDVRELQRALPAARATDEFLGATTKPDTL 312

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKK 388
                     +       ++      V +        +   +   L   L++      + 
Sbjct: 313 LGWLQADIAGNAPRPAGRSLSDADRSVQVHACHGPARQIDVLREVLLGLLEDDPTLQPRD 372

Query: 389 SALITADRNLARRVKLE----------LTRFGINIDISAGIPLSTT-LHSSILTSLLNAI 437
             ++  D +    + +                      A   L+ T    S+   LL   
Sbjct: 373 IVVMCPDIDTYAPLIVAGFGLGEVAGDCHPAHRLRVRLADRALTQTNPLLSVAAELLTIA 432

Query: 438 FKLNDFMAIATLVKHPLAK----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                   +  L +    +    F   +            +    +        L ++V 
Sbjct: 433 ETRATASQLLNLAQAAPVRAKFGFADDDLDTITTWVRESNIRWGFDPTHRRSYGLDTVVH 492

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
           +      +        S  S+   + A+ L D     +                +     
Sbjct: 493 NTWRFGLDRILTGVAMSEDSQAWLDTALPLDDVGSNRVELAGRLAELVERLHHVVGGLSG 552

Query: 554 TKLTVTCLQNVCLDEHR--KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            +  V  L  +           + W   + +   +       + +       +   ++  
Sbjct: 553 ARPLVAWLDALATGIDLLTACNDGWQRAQVQREFADVLARAGSRAAPLLRLPDVRALLDA 612

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            + G   +    ++ TL +   +  R +    + L GL++GV+P+ +  +      + + 
Sbjct: 613 QLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVFPRLSHPD---GDDVLAR 668

Query: 672 LNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             +        +       A G   + L+ T +  +          +    +L   D   
Sbjct: 669 EPMTGERDIRSEDRQLLLDAIGAATQTLVITYTGADERTGQPRPPAVPLAELLDALDQTT 728

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
           +   R +  +    +                P         +          P A  + R
Sbjct: 729 SAPVRERILVTHPLQPFDRKNVTPGALLGAKPFTFDPAALAAAQAAAGKRCPPTAFISGR 788

Query: 790 ILKLDFIPHFKKDP------DRTDRGTLFHNIITELIKKRINKNTPEINHLM-----KQI 838
           +           D                   +   +    +    +++ L      +++
Sbjct: 789 LPAPPAADVTLADLLDFFKDPVKGFFRALDYTLPWDVDTVEDSIPVQVDALAEWTVGERM 848

Query: 839 IDSHFEKENLPPHIDIIWRH 858
           +       +        WR 
Sbjct: 849 LRDMLRGLHPDDAAHSEWRR 868


>gi|160875208|ref|YP_001554524.1| exodeoxyribonuclease V subunit gamma [Shewanella baltica OS195]
 gi|160860730|gb|ABX49264.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS195]
 gi|315267401|gb|ADT94254.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS678]
          Length = 1270

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 90/799 (11%), Positives = 198/799 (24%), Gaps = 118/799 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVT----IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
             L  +       PL  A +     I V +      LR E  +  G  + +      L  
Sbjct: 11  EVLCAHLAAYLTQPLAFARLLSNEHILVQSPGMSTWLRLEIAKQNGIAAALE---FPLPS 67

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
               +   DLL     +   +      +L +L+              Y  + L    +  
Sbjct: 68  SFTWQLCHDLLPDVPKDNAFTKAAMTWKLMQLLPRMLQDDAFGPLRHYLGNTLENTPTIN 127

Query: 144 NA------------------IWLAKNLADIIDIIETEEKKW----------EDLHALKNE 175
            A                    L   +ADI D        W          + L    NE
Sbjct: 128 TADTCEHLNTSDMTADDIKLYQLCGRIADIFDQYLVYRPDWILAWEQNEHPDSLTKSLNE 187

Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--AEHLMKGTKGPIIIA 233
                W         A   +    +  +          L+ A    +  +      + + 
Sbjct: 188 DQR--WQPILW---RALIAFNRDELNQSHYHRANLHSDLIAALNNPDTSLAQLPQRLFVF 242

Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA----------IWNTITEKSTNITS 283
           G +   P T  ++  +A   +  ++      H                    ++      
Sbjct: 243 GISSMAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAELW 302

Query: 284 SNTTYSTHPQYSL-----AKLLDFLDIKREDVKRLGNV---SNEMYGRSMVISKSFLPPD 335
                  +P  +       +LLD L     +    G+                 S L   
Sbjct: 303 EEKLEVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNDPHSHASMLHGV 362

Query: 336 TSDMRNTDILENKIPNIQ-------------KCFSDVALIEADNEREEAISIAIALRMSL 382
             D+     L+  +                 +    + +    +   E  ++   L   L
Sbjct: 363 QYDILEMQTLDRVLGPDAELYQNVENRRLFKRDDQSIRVKSCHSPLREVETLHDHLLELL 422

Query: 383 ----DENKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSL 433
               D   K   ++  D          +         I   I+       +   +   +L
Sbjct: 423 SNHADLTPKDIVVMMPDVAAYAPYIDAVFSAKQGLHYIPYAIADRGAAQESPLINSFLNL 482

Query: 434 LNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDI--MDLK 489
           L           I ++++ P  L +F   +  L   +  L+   +R  +N        + 
Sbjct: 483 LGINQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRNEQSRLKQGVP 542

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELA------VLLVDHILQCITPLVTYKTNKNS 543
           +   +  A       + +  S  +   ++              + + +  +         
Sbjct: 543 AFEQNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQALGKLLNFIEVLDETAQI 602

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG-------- 595
                  +         L      +  +   L  +E    +++L  +++  G        
Sbjct: 603 LALPQVDALRLAELTELLDAFYDTDEDEREQL--QEIRDAIAALEQELLSAGKPLDTNSL 660

Query: 596 -------------SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
                        S +  +         + +    V  +     ++     +  R + F 
Sbjct: 661 DTSMFVTLAQQSISGLSLSIEVLQQWFNQRLTESRVGQRYLAG-SVNFCTLMPMRSIPFK 719

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
            + L G+N+GV+P+      F             + +   +      + +    L  +  
Sbjct: 720 IVCLLGMNDGVYPRVQHPVGFDLMAHFGARKGDRSRRLDDRYLFLEALLSAREQLYISYI 779

Query: 703 LRE--NNIPTIASRWLQRL 719
            R   +N   IAS  +  L
Sbjct: 780 GRSERDNSERIASMLVSEL 798


>gi|329911423|ref|ZP_08275523.1| hypothetical protein IMCC9480_455 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545900|gb|EGF31004.1| hypothetical protein IMCC9480_455 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 604

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 105/727 (14%), Positives = 207/727 (28%), Gaps = 132/727 (18%)

Query: 11  IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK 70
           IAPS+ F+ +    LL        R         +S  + VPT    + L+       G 
Sbjct: 8   IAPSAQFWTDAADRLLA---FLRDRPAAGGVADFSSSRVLVPTFEQARRLKLALATAVGS 64

Query: 71  KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
            + + P+I +L           L L    +    + +RL+ L   +              
Sbjct: 65  -AFVPPVITTLSSW--------LALQVPADNVAGDSERLMALYAELRQH----------- 104

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                L       + + LA+ L  + D + T           +  +    W  A D L  
Sbjct: 105 AWLKKLFSARRNTDLLPLAQTLLALSDEL-TLGLLPAMRVFPQESEQR--WQAALDQLSP 161

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
           A++           S        + R + +                        L+   A
Sbjct: 162 AAREL--------LSDESQLVWTIWRTQLDQRDANASR-------------LEHLLQLAA 200

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                 + +  ++       +       +     +        +  A L     +   ++
Sbjct: 201 RGAQSLVWISPVEADPFEQAF------LSAYAERHDVLPICLDWRAAALAPVCVMAWPEL 254

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                  +                                        +AL  A +  +E
Sbjct: 255 VDGSAAVDAPAALER---------------------------------IALFPACSLEDE 281

Query: 371 AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
           A+  A  +   +     + A+I  DR +ARR++  L R  + +    G  LSTT  +S L
Sbjct: 282 AVRGAQTVLDWIAAGHARIAIIAQDRVIARRLRALLERAEVFVADETGWKLSTTRAASAL 341

Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            +L + +    +  A+  L+K P                                     
Sbjct: 342 AALFDVVTSRAETGALLDLLKSPFIT---------------------------------- 367

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                +A     T     +        E A L +  +      L+  +        N S+
Sbjct: 368 -----VAPASVMTIELALRRANVTGGWEAAALALKALPAEHQLLLRLREQAGRFQRNRSL 422

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
            DW   T   L  +          L  +  G+ L +L  +I      +            
Sbjct: 423 GDWLVTTREVLDALG-----MQTALSTDSAGEQLMALLDRIALECGGLGQPFSFAEWRAF 477

Query: 611 RLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
             +  E+   ++ +S   + +L    +RL +FD +++ G++    P    +  F +  ++
Sbjct: 478 VGLQCESAAYEVSESDQRVVMLPLNGARLRSFDAVLVVGIDAAHLPSQPPETLFFANAVR 537

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
            +L L T E    Q   D      +   ++ +     +  P   S W++RL +       
Sbjct: 538 RELGLATREIRQRQQLRDLTELLSSGSTIVLSWQATVDGEPNTVSPWIERLQLTLLRAGL 597

Query: 729 DNLKKRG 735
             L +  
Sbjct: 598 PVLARAP 604


>gi|307719793|ref|YP_003875325.1| DNA helicase [Spirochaeta thermophila DSM 6192]
 gi|306533518|gb|ADN03052.1| DNA helicase [Spirochaeta thermophila DSM 6192]
          Length = 683

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 78/688 (11%), Positives = 178/688 (25%), Gaps = 138/688 (20%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+     T +A +E+    ++++ +   ++  IK+                         
Sbjct: 56  SILAVTFTNKAAREMYERALQLSPRTEGVM--IKTFHSFGAWLLRLYGE----------- 102

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
               L LAR   I+ +   +  + L             +    A      I   +     
Sbjct: 103 ---RLGLARDFAIYDD---EDARALLSSILEGSQRRHLSRYAWA------ISRAKDYALG 150

Query: 166 W-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             +DL ++  +                   + +RL +          +  +R   EH   
Sbjct: 151 PEDDLSSILEDDDFPE----------LYARYEDRLRDTGNVDFGDLILLPLRLLKEHEDV 200

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     +++     S  A   L+  +        +    D       +     ++ 
Sbjct: 201 RRKVHAAFRVVMVDEYQDSNVAQFFLLRELYGPE--TYLCVVGDEDQSIYRFRGAEVRNI 258

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                                             G     +       +           
Sbjct: 259 LDFPDAFE--------------------------GTHIVRLETNYRSTATILRAASGVIA 292

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
            N   L   +  I++    + ++   +  EEA   A   R   +E  +  A++      +
Sbjct: 293 HNEGRLGKTLRPIRQGGDVIRILSFPSAEEEA---AYWARFLREEGWEDVAVLYRAHYQS 349

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           R ++L L R G+   +   +          L + L  +    D ++   ++  P      
Sbjct: 350 RLLELALAREGVPYRVVGSLRFYEREEVKDLLAFLRLVLNPRDEVSFLRVINKP------ 403

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                                    I       +   A    +T V   +  +       
Sbjct: 404 ----------------------PRGIGAKSQEAIISHARGTGSTLVEVLREGVVPGKAGA 441

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
           +      +++    L       +       + D  K +         D++     L   +
Sbjct: 442 S------MVEFARFLDHIGERLSRMDLASWMEDLLKESGLWDYYQGFDDYTARQKLENLQ 495

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
           E   L+  +      G       +E++ +   L  G            + ++    ++ L
Sbjct: 496 ELLALARSY----PGGRDGLLAFLEYVALEGSLDRG--------SGDGVVLITMHNTKGL 543

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
            F  +I+ GL EGV+P   A                + E    +    +      +  ++
Sbjct: 544 EFSKVIITGLEEGVFPSWAAS---------------SPEDIEEERRLFYVALTRAKDGLF 588

Query: 700 -----TRSLRENNIPTIASRWLQRLLVL 722
                TR++R       ASR+L+ +   
Sbjct: 589 LSWAQTRNIRGRRSFQQASRFLREIPPE 616


>gi|229189331|ref|ZP_04316351.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 10876]
 gi|228594125|gb|EEK51924.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 10876]
          Length = 1166

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 97/893 (10%), Positives = 213/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KNDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGSSCYLDWIAPSLYR 858

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             R       L + +IP     +     V    G         + +         +     
Sbjct: 859  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 918

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 919  LQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRAPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIHLTGFAD 903
                  K+   F     K   + + +   +P  M +                I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWKGNSGESILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|229042983|ref|ZP_04190714.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH676]
 gi|228726323|gb|EEL77549.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH676]
          Length = 1165

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 98/893 (10%), Positives = 219/893 (24%), Gaps = 131/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++              ++  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMG-EEVGEIDYDADAELK 441

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
            L     +  +       I   ++        E +  + EA  +A  ++  +D        
Sbjct: 442  LGATYPEGEDVAAELLCIQQTEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 501

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 502  KNDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 561

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 562  IDNPMQDIPLAAVLRSPIVGLSDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 617

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 618  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 677

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 678  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 737

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 738  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 797

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 798  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 857

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             R       L + +IP     +     V    G         + +         +     
Sbjct: 858  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 917

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 918  LQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRAPIKTRP 977

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 978  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1030

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------IHLTGFAD 903
                  K+   F     K   + + +   +P  M + +              I + G  D
Sbjct: 1031 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETILVQGVID 1090

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1091 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1142


>gi|158340067|ref|YP_001521237.1| hypothetical protein AM1_B0203 [Acaryochloris marina MBIC11017]
 gi|158310308|gb|ABW31923.1| hypothetical protein AM1_B0203 [Acaryochloris marina MBIC11017]
          Length = 262

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 68/235 (28%), Gaps = 26/235 (11%)

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
              + S +++K     P +   R   KL     F      T  G   H  +  + K    
Sbjct: 1   MSYSLSATKLKTYGQCPKSYQFRYEHKLPSPTIF----GSTKLGNALHAALANVYKDWNY 56

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
                           H   E  P  +   W          ++    +I+   + + +  
Sbjct: 57  AYPLPSLDWFAVCWQQH-TSELTPTQVHEGWVA-LQLYYERYISSLPQIR---KPLGIET 111

Query: 886 PAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETAQKLIDPQLSLE 940
             +  ++       L+G  DR+D +  G +++ DYKT      P           QL   
Sbjct: 112 KVRANLQVRNIEFTLSGRYDRLDYIDDG-LELIDYKTSKSVNPPPSVDI------QLGFY 164

Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              L+      I  + +  L  I L+   K+           A  L E     L 
Sbjct: 165 YLILEQ-----IYKKALKRLSLIYLRSNEKLTYEVTPDHHQQAQSLIEDMAMKLR 214


>gi|158339268|ref|YP_001520445.1| hypothetical protein AM1_6194 [Acaryochloris marina MBIC11017]
 gi|158309509|gb|ABW31126.1| hypothetical protein AM1_6194 [Acaryochloris marina MBIC11017]
          Length = 262

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 68/235 (28%), Gaps = 26/235 (11%)

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
              + S +++K     P +   R   KL     F      T  G   H  +  + K    
Sbjct: 1   MSYSLSATKLKTYGQCPKSYQFRYEHKLPSPTIF----GSTKLGNALHAALANVYKDWNY 56

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
                           H   E  P  +   W          ++    +I+   + + +  
Sbjct: 57  AYPLPSLDWFAVCWQQH-TSELTPTQVHEGWVA-LQLYYERYISSLPQIR---KPLGIET 111

Query: 886 PAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETAQKLIDPQLSLE 940
             +  ++       L+G  DR+D +  G +++ DYKT      P           QL   
Sbjct: 112 KVRANLQVRNIEFTLSGRYDRLDYIDDG-LELIDYKTSKSVNPPPSVDI------QLGFY 164

Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              L+      I  + +  L  I L+   K+           A  L E     L 
Sbjct: 165 YLILEQ-----IYKKALKRLSLIYLRSNEKLTYEVTPDHHQQAQSLIEDMAMKLR 214


>gi|111017871|ref|YP_700843.1| hypothetical protein RHA1_ro00852 [Rhodococcus jostii RHA1]
 gi|110817401|gb|ABG92685.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 301

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 73/253 (28%), Gaps = 19/253 (7%)

Query: 746 DYTTKQPHYKRPKPFPPLEAQPRT-YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
           +           +P      + R   S S        P     R + +L           
Sbjct: 5   ESPAPVTKGSPSQPGDTSATRRRPALSPSRAGDFKQCPLLYRFRAVDRLPE-----APSR 59

Query: 805 RTDRGTLFHNIITELIK-KRINKNTPEINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHK 862
              +GT+ H  +  L       +   +   L+    +    +       +    R  F  
Sbjct: 60  AQVKGTVVHAALETLFGLPAAERVPQKAVDLILPSWERILAEAPDLIDLVPDEERDAFLD 119

Query: 863 ISHSFLE--HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
            + S +   +E +  +  E        +  +   G+ L GF DRID+  +G V + DYKT
Sbjct: 120 EARSLVTTYYELEDPTRFEAESCEQRVETELAD-GVLLRGFVDRIDVAPTGEVRVVDYKT 178

Query: 921 GDNPKKETAQKLIDP-QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
           G  P      +     Q+   A  L             A L  + L     +    ++ +
Sbjct: 179 GRAP--REMSESKALFQMKFYALVLLR-----TRGIVPAQLRLLYLASGTVLTYAPDEDE 231

Query: 980 KYSADELSEKSLK 992
               +       K
Sbjct: 232 LLRFERTLSAIWK 244


>gi|332185666|ref|ZP_08387413.1| double-strand break repair helicase AddA [Sphingomonas sp. S17]
 gi|332014024|gb|EGI56082.1| double-strand break repair helicase AddA [Sphingomonas sp. S17]
          Length = 1148

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 88/825 (10%), Positives = 194/825 (23%), Gaps = 93/825 (11%)

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AE 220
            L      ++           +  ++ + +    + A          +             
Sbjct: 323  LSLAARARHADLLADGLSVGRDYARAYGQAKRAIGAVDFDDLIRMTVDLLQRPGIGEWVR 382

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVAN---------HPNGAIVLPGLDCHIPTAIW 271
            + +      ++I  +  +      ++  +A+          P+   +    D       +
Sbjct: 383  YKLDQVTEHVLIDEAQDTNLNQWLIVRALADEFFVGRGLYAPSTRTLFTVGDYKQAIFGF 442

Query: 272  NTITEKSTNITSSNT--------TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                  +      +              P        + L +          +       
Sbjct: 443  QGTDPINFQAAEQHFHRRALQVAGEEDWPTEERGLPFNRLSLTHSFRSTRPILEFVDAAV 502

Query: 324  SMVISKSFLPPDTSDMRNTDILEN------KIPNIQKCFSDVALIEADNEREEAISIAIA 377
              +           +   +++                   D      D  R+ A  IA A
Sbjct: 503  EALAEPGMGLAGEVERHASEVKGPGRVTLWPPVVAGGSDEDEEGWIDDAVRKVATDIARA 562

Query: 378  LRMSLD------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            +R  LD            E +    L+    +LA  +   L   G+ +     + L+  L
Sbjct: 563  VRRWLDDGLMLESKGRRLEPQDIMILVKRRGDLASLIVARLYAEGVPVAGVDRLRLNAPL 622

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                L + +  + +  D +++A L+  PL  +       +  +    L A        D 
Sbjct: 623  AVQDLLAAVRFVLQPEDDLSLAALLVSPLIGWSQERLMEAGYRERGSLWAHLTRTLPADD 682

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL--VTYKTNKNS 543
            +     +L R         +    S   +  ++L   L       I  L          +
Sbjct: 683  LAPLRQMLGRADVFTPYQFLEELLSGPLDGRRKLIRRLGTEARDPIEELLNAALTFESTT 742

Query: 544  TCGNLSISDWTKL-TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
            T       DW     V  +++                +G  L +    + +  +   A+ 
Sbjct: 743  TPSLQRFLDWFDRGDVEIVRDPSAPLDAVRVMTAHGSKG--LQAPLVILADATADPTASP 800

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
               +                        L  + + +   +      L      +   +  
Sbjct: 801  RSILRWTPEPGALPIPVFPPRAEERGGPLDAVAAEIAARELAEHWRLFYVAATRAEEQLV 860

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
                + +    +     +    A                 + E       SR    +   
Sbjct: 861  VAGALGKRAAGVPPMHSWYATCARAMTAL----------GVAETEPGDGQSRTFYGMTPQ 910

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
                                   D+  +    +   P P           S  + L+ DP
Sbjct: 911  APFAPHSGASTPSPVLRAEAPLPDWVHRPAPQESRPPRPL-------APSSLGEDLVADP 963

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                A R                 +RG L H ++  L               + Q     
Sbjct: 964  PPTPAMRA--------------AAERGRLIHCLLERLPPVAPEARRGAAERWLVQAA--- 1006

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                      +   R    +     L+                P    + S G+ ++G  
Sbjct: 1007 -------GVENADLRADVSQAVFGILDDPAYAALFGPGSLAEAPIAATLAS-GLVVSGRV 1058

Query: 903  DRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALK 945
            DR+ +     + + DYKTG       +        Q++  AAAL+
Sbjct: 1059 DRLLIEAD-EIRLIDYKTGRRAPGGLDDVPVFHLAQMAGYAAALE 1102


>gi|257440573|ref|ZP_05616328.1| ATP-dependent exoDNAse beta subunit [Faecalibacterium prausnitzii
            A2-165]
 gi|257196896|gb|EEU95180.1| ATP-dependent exoDNAse beta subunit [Faecalibacterium prausnitzii
            A2-165]
          Length = 1233

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 96/912 (10%), Positives = 200/912 (21%), Gaps = 147/912 (16%)

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
            A   A +   I       E+                   ++     ++ +  +       
Sbjct: 331  ADEGAALFAQILELIPCSEEEAEADRRAAEPRLRALFAAVRDFDARFSAKKRDRKLLEFS 390

Query: 209  GYQIALMRAEAEHLMKGT---------KGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
             ++   +    +     T            +++     +      L   +A+ P G  + 
Sbjct: 391  DFEHQALHLLRDQDGPPTALCGVIRQNYAAVMVDEYQDTNALQDALYRCLAS-PAGDDLF 449

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR-EDVKRLGNVSN 318
               D       +             +                         +      + 
Sbjct: 450  LVGDLKQSIYRFRQADPSIFREKLDSWPALPGGAARPRPAEGTPGTDAMLALDANFRSAP 509

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE--AISIAI 376
            ++      + +  + P+  D    D          +    V      ++  E  A  IA 
Sbjct: 510  QVVEGINFLFERLMSPELGDTAYGDGQRLICGAPGEYTGSVEAHFLPDDTAETDAGWIAR 569

Query: 377  ALRMSLDE-------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
             +   +                 +   ++ A R         LT  GI +   A   L  
Sbjct: 570  RIEELVQSGEPVRDGSATRPVQYEDCCILLAARIDFPAYVEALTARGIPVYADARENLLD 629

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
              H   L +LL  I      + +A  +  PL  F   +    RA+          N    
Sbjct: 630  APHIRPLIALLKVIDNPAQDIYLAAAMLGPLFGFTDDDLVRLRARAEEIQKQQGENAPQR 689

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
              +    L+          T           E + +A                       
Sbjct: 690  ISLYGALLLTVNSGEDTPFTGKVRAFYARLTELRRMAR---------------------- 727

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
               ++      +        +      +      E+  +  S            I A   
Sbjct: 728  ---SVPAEQLLEEIFASTGYLAALGVMENGARRREDARRFASFCAG---AGSGGISALVR 781

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                       G+   P   +   + ++    S+ L F  + +          +T +   
Sbjct: 782  AIDAAALAGSTGQDTVPGGSRPGCVTVMTIHRSKGLQFPVVFVADTARRFNAADTRQPVL 841

Query: 664  LSRVMQSDLNLKT--------------------AEKYIGQAAHDFEMANGTRH-LIYTRS 702
            L R+  + L L+                     AE    Q    +      +  LI T  
Sbjct: 842  LHRMYGAGLRLRPEEGEGAYKTAAYTALSNVHAAEMRSEQMRLLYVALTRAQDKLILTVP 901

Query: 703  LRENNIPTIASRWLQRLLVLGGT-------------DFFDNLKKRGQCYLDWTRKLDYT- 748
            L         +R    L    G                   +   G         L+   
Sbjct: 902  LGIGKTSNPFTRAAAFLEAGAGQTLCRQANSFADWLRAALLVHPNGGPLRRLAEDLELPF 961

Query: 749  -------------------------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                                      ++    +  P      +          +L   P 
Sbjct: 962  ADTGSTITLTVQQALPEGVEPPDPEPEERPLAQADPALTEALRQGFAWQYPAAELARVPA 1021

Query: 784  A-------VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE--INHL 834
                      A +          K      + GT  H  +       +        +   
Sbjct: 1022 KVSVTGIVHKAEQTTLERPGFLAKDGLTAAEMGTALHAFLEHADFAALAAAKQAGTLETA 1081

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE-KIQSSIEKIFVNIPAKMAIES 893
            +    D   E +   P I              F+E E      + +++   +    A+ +
Sbjct: 1082 IPAERDRQVEAKLTAPEIAEKLDAGR---IRRFVESEAFARICAADEVLRELDFITALPA 1138

Query: 894  IGIH-------------------LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
              +                    + G AD + +  +  +++ DYKT     ++       
Sbjct: 1139 AEVLTAQGTDSADSAAVAQAKVLVQGIADLVLVFPN-HLELLDYKTDRRKSEDDFLAAYR 1197

Query: 935  PQLSLEAAALKA 946
             QL L A A+  
Sbjct: 1198 AQLDLYALAISK 1209


>gi|253998950|ref|YP_003051013.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
 gi|253985629|gb|ACT50486.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
          Length = 1137

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 86/794 (10%), Positives = 196/794 (24%), Gaps = 55/794 (6%)

Query: 150  KNLADIIDIIETEEKKWEDLHAL----KNEKYGMWWL---LAADFLKIASKYWTERLVEL 202
            + LA++I  ++        L  L    +       W      A  L +A         E 
Sbjct: 317  EQLAELIAALQATAGADAALCRLRCLPQLRAGEESWQVISALAQLLNLAVAQLWFVFQEA 376

Query: 203  NASSPVGYQIALMRAEAEHLMKG---------TKGPIIIAGSTGSIPATARLMSTV---A 250
                 V      + A A+                  +++     + P    L+  +    
Sbjct: 377  REVDFVEISQRALNALADDADAPSDLALRLDYRIQHLLVDEFQDTSPGQVHLLQRLTRGW 436

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP-QYSLAKLLDFLDIKRED 309
               +G  +    D       +           +       H     L +         + 
Sbjct: 437  EAGDGRTLFAVGDPMQSIYRFRKANVGLFLEVAREGIGDIHLTPLQLCRNNRSCPPVVDW 496

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            +                 +  + P   +     D      P IQ        +     RE
Sbjct: 497  INHAFAKVFPREDSIARGAIRYRPFVATRADEVDTGVVMHPLIQGTDESNEQLRT---RE 553

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI--PLSTTLHS 427
             A+ + +         +++ A++   R+    +  ++ R   +I   A     L+     
Sbjct: 554  AALMVKLIREEWAAHPQRRIAVLVRARSHLEHLVADIRRHHRDIRFQAVEIEALAGRQII 613

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
              L +L +A+    D +    +++ P       + ++  A +       R         D
Sbjct: 614  QDLLALTHALHHRADRVNWLAILRAPWCGLTLADMHVLAASD------HRSTIWRLLQQD 667

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
             +   +     Q+        Q  L+++ +      +      +                
Sbjct: 668  ARLAAMTEDGRQRALHVRSILQEVLAQQGRLPVSRWLHSAWLMLGGPWCLWEPG-DVQDV 726

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             +            Q        ++  L+   +      L    I     ++ +      
Sbjct: 727  QAFFALVDKLDNQGQFTPTRLAEEVEKLYAAADEAADGRLQLMTIHKSKGLEFD------ 780

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
              T ++ G   K   + S  L       +      ++ L               P     
Sbjct: 781  --TVILPGLERKTGNQDSPLLLWEEVAIADEEQGSSVELVAAPFVPKGARLDDGPTPYDY 838

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS-RWLQRLLVLGGTD 726
            ++     +   +                HLI T ++     P  AS  +LQ L       
Sbjct: 839  LRLLEKERAEHEDARVLYVAATRTERRLHLIATATVNAKGEPRPASGSFLQLLWPQVALQ 898

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
            F + +   G        +       P   R +             F+ +        ++ 
Sbjct: 899  FAEAMATEGVSETSPQAEATLADFVPPLVRLQQPQMPAVLQTATPFTPLWNPGEASESLS 958

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
                L+              D GTL H  +  + ++ +        H     +    +++
Sbjct: 959  LAASLE-------------ADIGTLAHRYLELMARQGLATWPEGRIHQAMPAMQRWLQQQ 1005

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
                        +  ++  + L   +       +   +     +            DR  
Sbjct: 1006 GHAEKQAHAAAAVVVQLLLTTLRSADGQWVLQAREGADAEVAWSYADASELKRYVVDRTF 1065

Query: 907  LLKSGFVDITDYKT 920
             +++G   I DYKT
Sbjct: 1066 -MENGVRWIIDYKT 1078


>gi|254476353|ref|ZP_05089739.1| double-strand break repair helicase AddA [Ruegeria sp. R11]
 gi|214030596|gb|EEB71431.1| double-strand break repair helicase AddA [Ruegeria sp. R11]
          Length = 1125

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 79/872 (9%), Positives = 204/872 (23%), Gaps = 114/872 (13%)

Query: 126  IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
             +     + P +  I+      L +   +++D +E   ++ E   AL+     +      
Sbjct: 280  FLTGASAKEPFTAKINGFPTKKLREANVELMDQLEPLMRRVEAARALRLALVAVEKSEIL 339

Query: 186  -DFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHLMKGTKGPIIIAGST 236
              F       +  R             +          + A   + + G    I++  + 
Sbjct: 340  HRFAAAFLPEYERRKQLRGWLDFDDLILKARQLLNDPAVAAWVLYRLDGGIDHILVDEAQ 399

Query: 237  GSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
             + P    ++  +A                +    D       +      + +   +  +
Sbjct: 400  DTSPVQWDVVEKLAQEFTAGEGARSEVERTIFVVGDKKQSIYSFQGADPDAFDRMQAEFS 459

Query: 288  ---YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT----SDMR 340
                 T      A L          ++ +  V  +                         
Sbjct: 460  TRLDETGAGLQNAALEFSFRSSAAVLRLVDLVFKDSEAAGFHKDALHRAFKAELPGRVDL 519

Query: 341  NTDILENKIPNIQKCFSDVALIEA-DNEREEAISIAIALRMSLD---------------- 383
               + +      +     V    A  +    A  IA +++  +D                
Sbjct: 520  WPVVEKVDTEEERDWTDPVDRPGARHHTVILAERIAASIKDMIDTKVTIPEDGPERGSFR 579

Query: 384  ----ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                +      L+     L   +        + I  +  + +   L    L ++L+ +  
Sbjct: 580  RRPVQPGDFLILVQRRSELFSEIIRACKAARLPIAGADRLKVGAELAVKDLAAVLSFLST 639

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
              D +++A  +K PL  +     +    +        +  ++  D       +LD +  Q
Sbjct: 640  PEDSLSLAAALKSPLFGWTEQMLFDLAHRRDGGSHLWKALRDRADEFPDTMAILDDLRGQ 699

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
             +         R+         LL     +    +    +   +                
Sbjct: 700  TDFLRPYDLIERILTRHGGRQRLLGRLGPEAEDGINALLSQALAYER------------- 746

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                           +W + +   +             +  +  + ++    ++     +
Sbjct: 747  -----SDIPSLTGFLVWMQTDDLEIKRQMGAAGNMIRVMSVHGSKGLEAPIVILPDTAKR 801

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                    +   G    +L +     +                                 
Sbjct: 802  RPPRDEEIMRAEGGPVWKLPSAQMPQVMQAARDHAQDKQRN------------------- 842

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS-RWLQRLLVLGGTDFFDNLKKRGQCY 738
               +    +         +   S  E +    +  + ++R L   G   +D     G   
Sbjct: 843  --ERLRLLYVALTRAEKWLIVASAGELSKDGDSWYQMVERALQEAGAQDYDTGHGTGLRL 900

Query: 739  LD--WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                W     ++        P+  P +  +      + +  L             K    
Sbjct: 901  QHGDWDGLPFHSEPPVEVVTPE-LPDVFLKQPPAYVAPVATLSPSDLG-----GAKALPG 954

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
               + +     RGT  H ++  L +       PEI   +    +       +     ++ 
Sbjct: 955  DLGQDEEAAKARGTRLHLLLEHLPQIADRTTWPEIARNLLAGHEE--TDNLVAEATAVLT 1012

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
                  I                     +     +      L G  DR+ +  +  V   
Sbjct: 1013 APELSDI-------------FAGDTLAEVAISADLNGA--RLHGVIDRLIIT-NETVRAI 1056

Query: 917  DYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
            D+K+        +   + +  Q+   A AL  
Sbjct: 1057 DFKSNATVPASPQKCPEGLLRQMGAYAHALAQ 1088


>gi|121596152|ref|YP_988048.1| UvrD/REP helicase [Acidovorax sp. JS42]
 gi|120608232|gb|ABM43972.1| UvrD/REP helicase [Acidovorax sp. JS42]
          Length = 689

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 71/613 (11%), Positives = 164/613 (26%), Gaps = 81/613 (13%)

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY-----QIALMRAEA 219
            W+   AL   +      +A        + + ERL    +           ++     E 
Sbjct: 143 GWDARKALAMAQDDHERSIAL-----IMQRYEERLTAYQSVDFDDLIGMPMRLLRHHPEV 197

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +   G +++     +      L+  +      A      D       W   T  + 
Sbjct: 198 REKWQRLLGHVLVDEYQDTNATQYELLKYLVG--ERARFTAVGDDDQSIYGWRGATLDNL 255

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      PQ ++ KL                            S      +    
Sbjct: 256 KKLPQDF-----PQLNVIKL---------------------EQNYRSTSAILRAANHVIQ 289

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEA-ISIAIA--LRMSLDENK--KKSALITA 394
            N  +    + +       V +++ DNE  EA  ++A    LR + +     K  A++  
Sbjct: 290 PNPKLFPKTLFSELGEGEPVRVVDCDNEEHEAERAVARIQGLRAASNPPPAWKNFAILYR 349

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
             + A+  +  L +  I   +S G           L +        +D  A    V  P 
Sbjct: 350 ANHQAKPFEKALRKANIPYKVSGGTSFFDRAEIKDLCAWFRLWINNDDDPAFLRAVTSPR 409

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G                ++ G   +  +  +          +   T           
Sbjct: 410 RGVGHTTLAALGEFATQHKQSMFGALFNAMLPAVIPKRGLEGLLEFGRTVNDLEHRARHT 469

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
              E A   +   L+ +        +++     ++ + W+ +   C         +    
Sbjct: 470 HGHEAARAFLADWLKDMGYEQHLYDSED--SEKVAAARWSNVLEFCDWMAQRAGGQIDDT 527

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                               G+ ++A     +++   +    T+  + ++   + +    
Sbjct: 528 -------------------AGATVQAATKSLLEVAQTIALLSTISEREQEQDMVVLSTLH 568

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            S+ L +  +IL G+ EG+ P     +       Q  ++  T ++   +    +      
Sbjct: 569 ASKGLEWPHVILAGVTEGMLPFKLDDD----DGRQQKVSDDTLQRLQEERRLMYVGITRA 624

Query: 695 RHLIYTRSLRENNIPTI-----ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
           +  +     ++            SR++  + +   T          +   D  R+L    
Sbjct: 625 QRTLAVSWTKKRKKGREMVACQPSRFIAEMKLDAATAR--------ENPRDKLRQLREEF 676

Query: 750 KQPHYKRPKPFPP 762
            +     P P  P
Sbjct: 677 ARKAQAAPSPATP 689


>gi|296444468|ref|ZP_06886433.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
 gi|296258115|gb|EFH05177.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
          Length = 777

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 79/685 (11%), Positives = 175/685 (25%), Gaps = 116/685 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R     + G  +  L  + +   +  +                  
Sbjct: 80  EILAVTFTNKAAREMRERVETLAGPGAEALQWLGTFHAISAKI----------------- 122

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +  +    +  +  W  + LA  ID  +     
Sbjct: 123 LRRHAELVGLKSNFTILDTDDQIRLLKQ--VLQAENVDDKRWPPRALAHQIDAWKNRGLS 180

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
              + A +   +                 + ERL  LNA       +  +R   E+    
Sbjct: 181 PAQVPAGEARSFAD------GKGGKLYALYQERLKALNAVDFGDLLLEALRLFRENADVL 234

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +  A    +  +A       V    D       W     ++  
Sbjct: 235 DDYRQRFRYILVDEYQDTNTAQYLWLRLIAQ--GRHNVCCVGDDDQSVYGWRGAEVENIL 292

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G     +                    
Sbjct: 293 RFEKDFP--------------------------GAKIVRLERNYRSTGHILAAASHLIAH 326

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNL 398
           N   L   +           +    +  EEA +I   +       ++  + A++      
Sbjct: 327 NEGRLGKTLFTEGADGDKPTVTGVWDSEEEARAIGEDIEQLQRKGQDLDEVAILVRASFQ 386

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            R  +      G+   +  G      L      + L  + +  D +A   +V  P     
Sbjct: 387 MREFEDRFITLGLPYRVIGGPRFYERLEIRDALAYLRCVAQPFDDLAFERIVNTP----- 441

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                               R         +  +  + S    +
Sbjct: 442 -----------------------------------KRGLGDATLQVLHDYSRQASVPLTQ 466

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            A +LV+       P  T +           + D T         +    + ++      
Sbjct: 467 AARVLVETEELKPKPRATLRNLMADFDRWRGLIDTTPQNELAELVLDESGYTQMWRDDKT 526

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            E         +++        +   +++ ++ +++ +    +      + I+    ++ 
Sbjct: 527 PEAAGRLENLKELVRAMEEFP-DLAGFLEHVSLVMETD----EAADQRRVSIMTLHGAKG 581

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F+T+ L G  EG++P   + +         D      E+    A      A     + 
Sbjct: 582 LEFETVYLPGWEEGLFPHQRSLD---------DNGRAGLEEERRLAYVGVTRAKRRLKIF 632

Query: 699 YTRSLRENN--IPTIASRWLQRLLV 721
           +  + R +     TI SR+L  L  
Sbjct: 633 FATNRRIHGLWQSTIPSRFLDELPA 657


>gi|206967662|ref|ZP_03228618.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH1134]
 gi|206736582|gb|EDZ53729.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH1134]
          Length = 1241

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 97/893 (10%), Positives = 211/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KNDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLSDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 693

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 694  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 753

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 754  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 813

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 814  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 873

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 874  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 933

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLG-GTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             R       L + +IP     +     V     +     +   +   +    L      P
Sbjct: 934  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 993

Query: 753  HYKRPKPFPPLEAQPR-----------TYSFSEIKQ--LINDPYAVYARRILKL----DF 795
                 K         +             S +EIK+     D       + L+       
Sbjct: 994  LESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNAFIKKLRAPIKTRP 1053

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 1054 RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1106

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIHLTGFAD 903
                  K+   F     K   + + +   +P  M +                I + G  D
Sbjct: 1107 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGNSGESILVQGVID 1166

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1167 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1218


>gi|228932517|ref|ZP_04095398.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar andalousiensis BGSC 4AW1]
 gi|228827207|gb|EEM72960.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar andalousiensis BGSC 4AW1]
          Length = 1166

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 92/899 (10%), Positives = 212/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KTDSMRPVKYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 612

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 613  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 672

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 673  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 732

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 733  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 792

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 793  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 852

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 853  APSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 912

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      +   K       +       + S   +                ++ +    R 
Sbjct: 913  EKKAVPLESERKEEVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 972

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 973  PIQTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEILQEQIAGMVNKELL- 1026

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1027 -TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1085

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1086 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKS 1143


>gi|225868652|ref|YP_002744600.1| ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701928|emb|CAW99448.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 763

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 82/692 (11%), Positives = 187/692 (27%), Gaps = 120/692 (17%)

Query: 46  SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-- 102
           ++     T +A +E+R          K T+   I +   +       +            
Sbjct: 54  NILAITFTNKAAREMRERALALSPATKDTL---IATFHSMCVRILRREADHIGYNRNFTI 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V   ++   + R++             L P+       S    I  AKN  D++D     
Sbjct: 111 VDPGEQRTLMKRIVKALN---------LDPKKWSE--RSILATISNAKN--DLLDE-RAY 156

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
           E    DL++                     K + E L    A       +  +R   ++ 
Sbjct: 157 ELGASDLYSQTVA--------------RCYKAYQEELRRSEAMDFDDLIMMTLRLFDQNP 202

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A  +L++ +A+      V+   D       W     +
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVTLLASRFKNICVV--GDADQSIYGWRGADMQ 260

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P   +  L +     ++ ++    V      R              
Sbjct: 261 NILDFEK-----DYPDAKVVLLEENYRSTKKILQAANEVIQHNRHRRPK----------- 304

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
                     K+         +    A++ER+EA+ +A  +     E     K  A++  
Sbjct: 305 ----------KLWTQNADGEQIVYYRANDERDEAVFVASTISNMCLELGKSFKDFAVLYR 354

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  I   +  G    +      + + L  +   +D ++   +V  P 
Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLTVVANPSDNLSFERIVNEPK 414

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G       R                                          ++  S 
Sbjct: 415 RGVGPGTLDKLR-------------------------------QFAYGQGQSLLEAASSL 443

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           E   L       +L   + L   + + +            + T         +       
Sbjct: 444 EQSPLKGKAAQAMLALASLLSDLRADLDQLSITALAEALLEKTGYLDMLRVQNTLESQAR 503

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   EE  +++  F  +       +A        +  L           +++ + ++   
Sbjct: 504 IENIEEFLSVTKSFDDLSAQQQEHEAGIDRLGRFLNDLALIADSDDGNAETAEVTLMTLH 563

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ EGV+P   A               +  ++   +    +      
Sbjct: 564 AAKGLEFPVVFLIGMEEGVFPLARA--------------AEDQDELEEERRLAYVGITRA 609

Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLLV 721
              ++     TR+L   +     +R+L+ +  
Sbjct: 610 EECLFLTNANTRTLFGKSSYNRPTRFLKEMSE 641


>gi|254521548|ref|ZP_05133603.1| DNA helicase II [Stenotrophomonas sp. SKA14]
 gi|219719139|gb|EED37664.1| DNA helicase II [Stenotrophomonas sp. SKA14]
          Length = 730

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 75/722 (10%), Positives = 180/722 (24%), Gaps = 121/722 (16%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+R          S  +  I +   +                         
Sbjct: 60  VTFTNKAAGEMRHRIDAQLPNGSRGM-WIGTFHGLANRLLRLHWQD-------------- 104

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL------AKNLADIIDIIETEE 163
                       KLP+  + +  +  L L      A+ L      AK +A  I+  + E 
Sbjct: 105 -----------AKLPEGFQVMDSDDQLRLVKRVVQALELDDGKYPAKQIAWWINAQKDEG 153

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
           ++ + +    N+          + ++ A   +  R             +       ++  
Sbjct: 154 RRPQHIQPEPND-------AWLETMRQAYIEYQSRCDRAGLVDFAELLLRAHELLRDNPA 206

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I++     +       +  +A   +   V    D       W     ++
Sbjct: 207 LLSHYRARFREILVDEFQDTNAIQYAFVRVLAG--DSGHVFVVGDDDQAIYGWRGAKVEN 264

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +                            G  +  +       +      +   
Sbjct: 265 VQGFLRDFP--------------------------GAQTIRLEQNYRSTANILGAANAVI 298

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADR 396
             N D +  ++         + L  A NE +EA  I    R  + +     + A++    
Sbjct: 299 AHNPDRIGKQLWTDSGDGEPIDLYAAYNEMDEARYIVERARQWVRDGGSYTEVAVLYRSN 358

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  L    +   +  G+            + L  +   ND  A    V  P   
Sbjct: 359 AQSRALEEALLSEQVPYRVYGGMRFFERAEIKDALAYLRLLSNRNDDAAFERAVNTPTRG 418

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G       R +        R    S     +       +A +  N            + 
Sbjct: 419 IGDRTLDEVRREA-------RAQGISLWEATMLVTQGSALAARARNALAGFLVLVNELQA 471

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
           + L + L + +   +      +     +   L     T      +        R      
Sbjct: 472 QTLHMTLAERVDHVLARSQLREHWSKESRNALDSESRTDNLDELVSVASRFVRRADDIEE 531

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             E+   L +  +                                      + ++    +
Sbjct: 532 VGEDMDELVAFLAYAALEAGEG---------------------QAQAGEDGVQLMTLHSA 570

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + L GL EG++P   +              L+ + +   +    +      R 
Sbjct: 571 KGLEFPLVFLAGLEEGLFPSARS--------------LEESGRLEEERRLAYVGITRARQ 616

Query: 697 -LIYTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            L+ + +        +  ++ SR+L+ +      +    ++      +  +R + + + +
Sbjct: 617 KLVLSYAESRRIHGQDNYSLPSRFLREIPRELLHEVRPKVQVSRPASMGASRVMGHASIE 676

Query: 752 PH 753
             
Sbjct: 677 AP 678


>gi|144899270|emb|CAM76134.1| UvrD/REP helicase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1146

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 87/827 (10%), Positives = 182/827 (22%), Gaps = 99/827 (11%)

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--- 226
              LK  +                  + +R             +A     A   +      
Sbjct: 331  ARLKAAQVAQCTAALTRLGHALLAAYEKRKQGRALMDYDDLILAARDLMARPGVAPWVLF 390

Query: 227  -----KGPIIIAGSTGSIPATARLMSTV--------ANHPNGAIVLPGLDCHIPTAIWNT 273
                    ++I  +  + P    +++ +            +   V    D       +  
Sbjct: 391  KLDGGIDHVLIDEAQDTNPDQWAVVAALTGEFFAGLGARESLRTVFAVGDIKQSIYSFQR 450

Query: 274  ITEKSTNITSSNTTYSTHPQYSLAK--------------------LLDFLDIKREDVKRL 313
               ++ +       +         +                    +       R+ V   
Sbjct: 451  ADPQAFDDMRKLFAHHVPLAKREWREVPLNLSFRSTRAVLDAVDAVFAGDGPGRDGVTDD 510

Query: 314  GNVSNEMYGRSMVIS--KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                  +  R       + + P            +  I  ++       L      R  A
Sbjct: 511  DPDPRHLAFRQGQAGLVELWPPVIPRPADEIPAWKPPIERLRGDSPRTRLARLMAARIAA 570

Query: 372  ISIAIALRMSLDEN--KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
            +  A  L              L+         +  EL    I +  +  + L+  +    
Sbjct: 571  MIGAEILESQNRPIRAGDVLVLLRRRGGFVEDLVRELKDLKIPVAGADRMVLTEQMAVMD 630

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
            L +L N +    D + +AT++K PL      E +          +     + +       
Sbjct: 631  LMALGNFLLLPEDDLTLATVLKGPLVGLSEDELFRLAWNRGEASLWDTLKRKAGSEAAFA 690

Query: 490  SLVLDR--IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                    +    +        + +  +      LL     +   PL  +     +    
Sbjct: 691  RAEDYLSPLLALADRLAPFALFAHVLGKLGGKRALLARLGPEAEDPLDEFMALTMAFERG 750

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
               S         L+ +         +L                                
Sbjct: 751  HPPS-----LQGFLRWLESGGTEIKRDLEQGG---------------------------- 777

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                 +   TV       + +  +       +    L+  G  E        +      +
Sbjct: 778  --RDAVRIMTVHGSKGLQAPIVFMPDTLQMPIQGPRLLWNGGPEDEILLWPPRAEMADDI 835

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
             ++    +   +        +         L           P      L R  +     
Sbjct: 836  CEAARAAQKLAREREYRRLLYVAMTRAEDRLYVCGWETLRAAPQGCWYNLIRTSLEPLAA 895

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
              ++         D    L  T +Q H    + F   EA               +P    
Sbjct: 896  RMEDPFLAAAGETDDATVLRLTCRQEHAVEAQTFAEAEALLPALPAWARLTAPPEPAPPR 955

Query: 787  ARRILKLDFIPHFKKDPDRTD------RGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
                 + +      + P  +D      RG L H ++  L     ++        +K    
Sbjct: 956  PLAPSQPEGEEPPARSPLSSDGAGRFKRGKLVHKLLQILPDLPRDRRAQAAIRFLKGTG- 1014

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
                       +D              L+H              +P    I      L+G
Sbjct: 1015 ----------GLDTSAALAIANEVSDILDHAGFAPLFAPGSKAEVPIVGLI-GESRALSG 1063

Query: 901  FADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALK 945
              DR+ +  +  V + DYKT   P    E    L   Q++    AL 
Sbjct: 1064 QVDRLVVTAT-EVLVADYKTNRRPPAVSEAIPDLYVRQMAAYRLALA 1109


>gi|281355724|ref|ZP_06242218.1| exodeoxyribonuclease V, gamma subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281318604|gb|EFB02624.1| exodeoxyribonuclease V, gamma subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 1095

 Score = 88.1 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 106/970 (10%), Positives = 229/970 (23%), Gaps = 115/970 (11%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI-LP 76
             ++  A+    + +    DP  P      T+ V T+     L  E        +   +P
Sbjct: 11  LEDLA-AIFRRMIFDRPGPDPFVPE-----TVVVQTQGMATWLEQEMARDGSIMANFDMP 64

Query: 77  IIKS--LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
            ++S  L  + +     +L          S       + RL+     + P++ + L    
Sbjct: 65  FLQSFILKTMRQLLPREELEAFNRECRIFSPEVAAWRIFRLLGESAGRWPELDRYLTGSE 124

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
           P            LA  +AD+ D  +       +      E     W           + 
Sbjct: 125 P------VRKRRQLAGRIADLFDQYQVYRGDLLEAWRRGEEPGRYVWQ---------QQL 169

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTGSIPATARLMSTVANHP 253
           + E       + P G+         E  +       I + G     P     +  ++   
Sbjct: 170 YREI--AKGFTGPYGWFRKFFERVPERDLWSRVPVRISVFGVGTMPPLYLNFLRHLSAIT 227

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
              +                  ++  +  S     +      L  L             L
Sbjct: 228 EVNLFYLNPCREFWDTYEKRFRDRLADKNSGVFENTDVENPLLTSLGAQGRSFFAQTLEL 287

Query: 314 GNVSNEMYGR------------SMVISKSFLPPDTSDMRNTDILENKIPNIQ-------- 353
             ++                        + L     D+           +++        
Sbjct: 288 PELARVRSAELFRSFVPEKSESLAYPGATMLQTIQEDILRMRRRGPDGDDVEVGRTRKID 347

Query: 354 -KCFSDVALIEADNEREEAISIAIALRMSLDE-----NKKKSALITADRNLARRVKLEL- 406
            +    + +      R E   +   L    DE       +   ++  D N        + 
Sbjct: 348 YRRDRSIRVHSCHTIRRELEVLKDELIRLFDESNGAVQPRDVIVMAPDINAYEPYIRAVF 407

Query: 407 --TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
               F     IS       +L +     LL       +   I +L+  P  +  F     
Sbjct: 408 NDETFEGRYGISDRSLRQESLIAETFLQLLRQASGRFEASEILSLLDTPALRQKF-RIAD 466

Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
           +  +   ELV     +  YD    +                       +    E  ++  
Sbjct: 467 AEMETLRELVGQSAIRWGYDAAARRRFCDFEFGEFSWRCGFDRLLLGFAMTAPEDQLVNG 526

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD-------EHRKLPNLWF 577
           +++          +          S+++  + T                 +    P+   
Sbjct: 527 EYLPCGNAEGSDAELLGRFVSFVSSLAELGERTGNAHSAEAWAQLFHNAVDTFFRPDKES 586

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG---ETVKPKIEKSSTLFILGTL 634
             E   L                +    ++ +T  +                 +     +
Sbjct: 587 LPEITALRGTIDAFAAAARDGNCDEPLPLEAVTDQLSDSFSLVQNNMPFLRGGITFCSMV 646

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
             R +    + L GLNEG +     ++  L   + SD  L    + +       E     
Sbjct: 647 PLRSIPMQAVALLGLNEGEF---PRRDIRLGFNIMSDRRLGDRSRQMEDRYLFLEALLAA 703

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVL-------------------------GGTDFFD 729
           R  +       + +          L  L                                
Sbjct: 704 RRTLMLFYHGSDPLTLEERPPAVPLADLIDVLKASFRDFEVIRHSLQSFNFRYFDPANGA 763

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF----SEIKQLINDPYAV 785
            L+     Y    R L           P+   P   +P         +E+++   +    
Sbjct: 764 ELRCYSPEYFRAARSLH--GYLAGGAEPESRLPFTLRPEPLPPVLELAELERAFLNHPEY 821

Query: 786 YARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
           + R  + L         +     T  G   + +   L+  R++ +      L  +++ + 
Sbjct: 822 FLRNRVGLSFRTDRCTPEDKEPFTLDGLGSYQVRDRLLDWRLSSDEGPSGELAYRLMLAG 881

Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
            +        +          + +  ++    +   E   V           GI +TG  
Sbjct: 882 GQLPLGSAGRNEFETARRQVAALTPEQYALLTERHAEPFAVET--------NGITVTGSM 933

Query: 903 DRIDLLKSGF 912
               L   G 
Sbjct: 934 ---FLSPDGT 940


>gi|282858206|ref|ZP_06267397.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
 gi|282583958|gb|EFB89335.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
          Length = 300

 Score = 88.1 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 80/292 (27%), Gaps = 22/292 (7%)

Query: 752  PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                   P   L A       S +      PY    R +L  +     + + D    G  
Sbjct: 1    ALPASRVPPGRLGAAAAEARLSSVDDFAECPYLFALRAVLGYEEP-PREGEYDPLRGGAA 59

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH----SF 867
             H +   +  +              + +      EN P  +                   
Sbjct: 60   VHALWERVWCEYSASGCRGSIEERTRRLFDEVVGENYPALLRSPSLSRVRSELRFCVKRC 119

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIES---IGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924
               +++ ++++  +   I  ++ +       +   G  DR+D LK G   + DYK G + 
Sbjct: 120  AATQDEWEAALRPLRAEILCELDLPPLRRGAVTFRGRCDRLDRLKDGRFLLWDYKAGKSS 179

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA-----NLFYIRLKQKFKIDCITNDKK 979
                       QL   A AL++G      C         +              +     
Sbjct: 180  -----AYGKAFQLGCYALALESGGLGGGGCAGWGYVGQKDAAVSGCWDDDVASLLNKRSG 234

Query: 980  KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031
              +  E  + + + L +I   +  G+ P     R   K      +  + R  
Sbjct: 235  SKTLRERKDGAGQLLSDIALAMDAGQFP----PRYESKRCRACAFAAICRRG 282


>gi|52842039|ref|YP_095838.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
            pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148359358|ref|YP_001250565.1| ATP-dependent DNA helicase [Legionella pneumophila str. Corby]
 gi|296107405|ref|YP_003619105.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
            pneumophila 2300/99 Alcoy]
 gi|52629150|gb|AAU27891.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
            pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148281131|gb|ABQ55219.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
            pneumophila str. Corby]
 gi|295649306|gb|ADG25153.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
            pneumophila 2300/99 Alcoy]
 gi|307610513|emb|CBX00098.1| hypothetical protein LPW_18431 [Legionella pneumophila 130b]
          Length = 1076

 Score = 88.1 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 85/757 (11%), Positives = 202/757 (26%), Gaps = 136/757 (17%)

Query: 201  ELNASSPVGYQIALMRAEAEHL--------MKGTKGPIIIAGSTGSIPATARLMSTVAN- 251
            E N           + A  +          +  +   ++I     +      L++ +   
Sbjct: 372  EHNEVDFTAISQQALAALGDLDNPTDLALYLDHSIHHLLIDEFQDTSITQFELLTKLVQG 431

Query: 252  --HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 G  +    D       +             +          L  L   L      
Sbjct: 432  WLPGEGKTLFLVGDPMQSIYRFRQAEVGLFFQAKEHGIGPV----RLKSL--ELRCNFR- 484

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                 +    +   +   SK F      +        +     +   S +  ++  N  +
Sbjct: 485  -----STETIVNWVNDHFSKIFSQQVDIESGAVSFHPSVHVIEKNESSTIQAVQFKNREQ 539

Query: 370  EAISIAIALR-MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            EA  +   +        ++  A++   R     +   L +  I    +    L+  +H  
Sbjct: 540  EARHLIEIINSELNRNPEQTIAVLVRTRTQLPEIISLLRQNNIPYQGTDIDLLANLVHLR 599

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
             + SL +A+    + ++  +++  P    G  + +             R +     +   
Sbjct: 600  DVWSLAHALLFPGNRLSWLSILHSPYVGLGLSDIHCIA------QYNSRKSIYHNLLH-- 651

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                                         +    + +         +           + 
Sbjct: 652  ----------------------------LDKIQDISEEGRIRANFFIQIMNQALLCRSHS 683

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             +SDW   T+  L    + +  +L +L   +    L     +          +  E+++ 
Sbjct: 684  RLSDWIADTLKNLHVEKILDKAQLNDLE--QLWMLLDQYEKE------GRIPDMNEFLNE 735

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL--SR 666
              +L   +T        S L I+   +S+ L FDT+IL GL        +    +L    
Sbjct: 736  FNKLYAQQTTP------SRLQIMTIHKSKGLEFDTVILPGLGSQANRGESPMLRWLKLPT 789

Query: 667  VMQSDLNLKTAEKYIGQA---AHDF----------EMANGTRHLIYTRSLRENNIPTIAS 713
                +L L +  K   Q     +D+            A    ++  TR+           
Sbjct: 790  QDHGNLLLVSPIKSANQDNCPLYDYLDQLDEEKSAYEAQRLLYVAVTRAKS--------- 840

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
                   +        + K   +  L +   +    +  H ++  P P            
Sbjct: 841  ------RLYLLDHSAKSYKSSFRNLLKYQEFIADPDEAQHEEQEFPLP------------ 882

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPD----RTDRGTLFHNIITELIKKRINKNTP 829
               +L+  P   Y ++I  L                   G + H ++  +          
Sbjct: 883  ---KLVKLPIEYYQKQIPSLVQSQESSCPEISSGIPRLIGIVSHQLLQWICDNHPQTINH 939

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS----FLEHEEKIQSSIEKIFVNI 885
               +L+   + +    +        + +    ++  +    ++    + + +  ++ V  
Sbjct: 940  VPWNLVHNELKALGLNQEAQQTALSMIKIQISQMYENKIGLWILSRHENEQNEYELLVEY 999

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
              K+        +T   DR    ++G   I D+KTG 
Sbjct: 1000 ENKL--------VTRIIDRTF-TENGTQWIIDFKTGK 1027


>gi|258514071|ref|YP_003190293.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777776|gb|ACV61670.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum acetoxidans DSM
           771]
          Length = 737

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 73/689 (10%), Positives = 177/689 (25%), Gaps = 122/689 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP--PV 103
           ++     T +A  E+R     I    +  L  + +      +    D  L          
Sbjct: 63  NILAITFTNKAALEMRERVAAILPGVARDL-WVATFHSTCLKILRRDGQLLGYGQDFSVY 121

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               R   +   I                                      +ID  +  +
Sbjct: 122 DEGDRHTLIKDCIKELNIDDKTFSPQYVSSIISKAKN-------------KLIDE-DKYD 167

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-- 221
           ++ +++              AA       K + ++L   NA         ++R   EH  
Sbjct: 168 READNILT----------QKAAG----IYKLYQKKLKTYNAVDFDDLLFLVVRLFKEHPN 213

Query: 222 ---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I++     +      L+  +A       V+   D       W     ++
Sbjct: 214 VLERYQHKFRYILVDEYQDTNYVQYLLVKMLAQKSRNLCVV--GDPDQGIYGWRGADIQN 271

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       +P+  +  L                                   +   
Sbjct: 272 ILSFE-----RDYPEACVVTL---------------------EQNYRSTQNILDAANHII 305

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395
             N    E ++       S + + ++ +E  EA  +   ++           + A++   
Sbjct: 306 SYNQGRKEKRLWTDAGKGSPIIVCKSRDEFAEARHVVEQIKHLHLVEGVSYSECAVLYRT 365

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  + R+G+  +I  G+          + + L  I    D ++++ ++  P  
Sbjct: 366 HAQSRVLEEIMLRYGLPYNIIGGLRFYERKEIKDVIAYLRVIVNPADEVSLSRIINVP-- 423

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                                R       +  + +   +          +      L+ +
Sbjct: 424 ---------------------RRGIGDVSLTKIFAFAAEAGIPAGLAMEMAEQIPGLNGK 462

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            ++ A LL          L  ++  +          D  + T    +            L
Sbjct: 463 ARKQAALLGSL-------LQVWRRQQEFLPVTDLTVDILERTGYRQELEYEGTVEARTRL 515

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              EE  +++ L+         ++       + ++ L           ++  + ++    
Sbjct: 516 ENLEEFLSVTRLYD--------LETVEGTLGEFLSELSLVTDADRDNGEAERVNMMTLHT 567

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + L  + E           F      SD      E+ +        M    +
Sbjct: 568 AKGLEFPFVFLVAMEE---------GIFPHNRALSDAGELEEERRLAYVG----MTRARQ 614

Query: 696 HLIYTRSLRE----NNIPTIASRWLQRLL 720
            L  + S +     N      SR+L+ + 
Sbjct: 615 KLYLSYSFQRTIYGNTNYCRPSRFLEEIP 643


>gi|157962240|ref|YP_001502274.1| exodeoxyribonuclease V subunit gamma [Shewanella pealeana ATCC
           700345]
 gi|157847240|gb|ABV87739.1| exodeoxyribonuclease V, gamma subunit [Shewanella pealeana ATCC
           700345]
          Length = 1269

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 90/856 (10%), Positives = 209/856 (24%), Gaps = 116/856 (13%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            AL      E     P +PLL+    I V +      LR E        + +      L 
Sbjct: 11  EALSKLLANELRTPLPNSPLLMPE-HILVQSPGMSTWLRLEIARQNNIAAGLE---FPLP 66

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL------------------- 123
                +    LL         +      +L  L+    +                     
Sbjct: 67  SSFIWQLCHTLLEDVPKENAFTKAAMTWKLMELLPTLIDDEDFAPLANYLNNGNASQESV 126

Query: 124 -----------------PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
                             D  +    E       +P     L   +ADI D        W
Sbjct: 127 VKPADSDDTLADSFSLSGDSEETQESEDQGESEQNPLKLYQLCGQIADIFDQYLVYRPDW 186

Query: 167 EDLHALKNEKYGM------WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                                      L  A   +    +  +         AL  A  +
Sbjct: 187 ISAWEANEPTLPPKGDKLSPAQAWQPILWRALIDFNANTLGKSRYHRANLHQALFDALDD 246

Query: 221 --HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
               ++     + + G +   P T  ++  +A   +  ++      H    I +      
Sbjct: 247 PNTSLEALPRRLFVFGISSMAPQTLDVLHYLAKRIDVIMLNLSPCQHYWGDIVDPRLRAR 306

Query: 279 TNI-----TSSNTTYSTHPQYSLAKLLDFLDIKR------------------EDVKRLGN 315
             +           +    +     L +   + R                  +  +    
Sbjct: 307 MALQYADKHKLEVEWEDKLEVGNPLLANNGKMGRELLDLLLELPEEHTAFDLDYYQAPST 366

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
            +     +  ++  +             +  +    I      + +    +   E  ++ 
Sbjct: 367 QTMLNGVQYDILELTTRGQSLGPDAALYLSLDGRRVITDSDDSITVRSCHSPLREVETLH 426

Query: 376 IALRMSLDEN--------------KKKSALITADRNLARRVKLEL-----TRFGINIDIS 416
             L   L                  K   ++  D          +         I   I+
Sbjct: 427 DHLLEMLSRPLTDEQLANGETPLAPKDIVIMMPDVAAYAPYIDAVFGAKQGGHYIPYAIA 486

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELV 474
                  +   +    LL           I ++++ P  L +F   ++ L+  K  L+  
Sbjct: 487 DRGAAQESPLIASFLHLLKINQSRFGLTDIISILEVPAVLRRFELDDESLAVIKRWLDQA 546

Query: 475 ALRGNKNSYDIMD--LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA------VLLVDH 526
            +R  ++     +  L +   +  A       + +  S  +   +E              
Sbjct: 547 GVRWGRDETSRTEFQLPAFEQNSWAFGIKRLILGYSFSDDAPLYQERLSVNGVEGQTAQA 606

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           + + +  +       +S     S+S+        L++    +      +  +E  + +  
Sbjct: 607 LGKLLDFIEALDHVHHSLAQVCSLSERMTQLEAILEDFYEVDDD--EIVQRQEIREAIVK 664

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
           L  ++ E G           +     +    V  +     ++     +  R + F  + L
Sbjct: 665 LNEELTEAGHTTPLTIEVIQNWFNSRLSESRVGQRYLAG-SVNFCTLMPMRSIPFKLVCL 723

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR--SLR 704
            G+N+GV+P+      F             + +   +      + +    L  +   +  
Sbjct: 724 LGMNDGVYPRVQHPVGFDLVAQMGPRKGDRSRRLDDRYLFLEAILSAREQLYISYIGNSE 783

Query: 705 ENNIPTIASRWLQRL----------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
            ++   I S  +  L            L        L+  G        K++    +   
Sbjct: 784 RDDSERIPSMLVSELIEYCQLVYLPHDLEQQASTHELEADGNASQQLIEKIEKGVAKHLI 843

Query: 755 KRPKPFPPLEAQPRTY 770
            R +P  P + +  + 
Sbjct: 844 -RKQPLQPFDPRLYSA 858


>gi|332366980|gb|EGJ44720.1| exonuclease RexA [Streptococcus sanguinis SK1059]
          Length = 1224

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 90/855 (10%), Positives = 203/855 (23%), Gaps = 109/855 (12%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGST 236
             L  DF+   ++ + ER    NA          +             +     +++    
Sbjct: 366  ELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILERFPEVRRFYQERYHEVMVDEYQ 425

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS- 295
             +     R++  +A    G       D       +     +  +            Q   
Sbjct: 426  DTNHTQERMLDLLAR---GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKL 481

Query: 296  ------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN-- 347
                      L+ L+   +  KRL +        +         P   +    +      
Sbjct: 482  IVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKREPNPANRASFLI 541

Query: 348  -KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK 403
             +             +       E   +   +    +E     K   L+TA R     + 
Sbjct: 542  YEGTKESPEEEADEGLPHAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLIL 601

Query: 404  LELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                +  I +    G      ++   ++   L  I    +  A+  L+K P+  FG  E 
Sbjct: 602  AAFEQHQIPLVPDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDEL 661

Query: 463  YLSRAKNALEL---VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                 + + E           N+ +   L   ++ +   +K        QS  +      
Sbjct: 662  ARLSLQASQERSQENLYEKLLNALEGRGLNPALVTQELQKKLQHFHETLQSWRTYSKTHS 721

Query: 520  AVLLVDHI---LQCITPLVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNL 575
               L+  I         + T            ++S    +   +  + +          L
Sbjct: 722  LYDLIWKIYQDRFYYDMVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRIL 781

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              + +    S   +   +    +  +  + ++     +         + SS+  IL   +
Sbjct: 782  ENQHDL--ASVPVAAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTK 839

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
               + +   +   + +   P     +   +   Q +L          Q    +       
Sbjct: 840  GIGIKYVADVSVSVEDPYAPNQLRISMD-TLPYQQNLGELQLASLSEQMRLLYVAMTRAE 898

Query: 696  HLIYTRSLRENNI----------PTIASRWLQ------------------------RLLV 721
              +Y                       S  L+                            
Sbjct: 899  TKLYLVGKGSQEALDKRQWGKSQQGRLSAGLRSQLNNFQDWLYAIQAVFSDENLAYETRF 958

Query: 722  LGGTDFFDNLKKR-GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-I 779
            +   +       R  +  L     L    +    +R         Q  +   S I+   +
Sbjct: 959  VTDEELTAEEIGRINEPVLFPADDLADNRQSDDIRRALDILERVDQLNSQYRSAIELPSV 1018

Query: 780  NDPYAV--YARRILKLDFIPHFKKDPDRT-------------------DRGTLFHNIITE 818
              P  +  +   I+  D +    +                          G+  H ++  
Sbjct: 1019 RTPSQIKKFYEPIMDTDGLDIMDERVSFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQR 1078

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
            +            + L +   D   +K+     I   +     ++             + 
Sbjct: 1079 IPLDSSPSMAVLRSALAQVQADDAVKKQIQLSKIASFFETDLGRLL----------IENS 1128

Query: 879  EKIFVNIPAKM----AIESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKL 932
            +++    P  M            L G  D   +       + + DYKT    +       
Sbjct: 1129 DRVCREAPFAMLKQDEDSGQEFVLRGILDGYLLFED---RIILFDYKTNKYKEPSELIAR 1185

Query: 933  IDPQLSLEAAALKAG 947
               QL L A AL   
Sbjct: 1186 YRSQLDLYAQALSRS 1200


>gi|158340173|ref|YP_001521343.1| hypothetical protein AM1_B0310 [Acaryochloris marina MBIC11017]
 gi|158310414|gb|ABW32029.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 262

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 67/235 (28%), Gaps = 26/235 (11%)

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
                S +++K     P +   R   KL     F      T  G   H  +  + K    
Sbjct: 1   MSYPLSATKLKTYGQCPQSYQFRYEHKLPSPTLF----GSTKLGNALHAALATIYKDWNY 56

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
                           H  +    P                ++    +I+   + + +  
Sbjct: 57  AYPLPSLDWFAVCWQQHNGELT--PTQIHEGWAALQLYYERYISPLPEIR---KPLGIET 111

Query: 886 PAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETAQKLIDPQLSLE 940
             +  ++       L+G  DR+D +  G +++ DYKT      P           QL   
Sbjct: 112 KVRANLQVRNIEFTLSGRYDRLDYIDDG-LELIDYKTSKSVNPPPSVDI------QLGFY 164

Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
              L+      I  + +  L  I L+   K+    ND     A  L E     L 
Sbjct: 165 YLILEQ-----IYKKALKRLSLIYLRSNEKLTYEVNDDHHQQARSLIEDMAMKLR 214


>gi|325475281|gb|EGC78466.1| hypothetical protein HMPREF9353_00481 [Treponema denticola F0402]
          Length = 935

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/293 (17%), Positives = 94/293 (32%), Gaps = 40/293 (13%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK------ 822
              S +++K     P   +  ++L +    +     D  + G L HN++  L K+      
Sbjct: 645  KLSQTDLKIFTECPVLWFLEKVLSVFSENYDAGIFDARNIGNLSHNVLEVLYKEIGSTDK 704

Query: 823  -RINKNTPEINHLMKQIIDSHFEKENLPPHIDI--IWRHLFHKISHS---FLEHEEKIQS 876
               +KN          I D   EK             + L  ++  +    LE +  + +
Sbjct: 705  YFNSKNLDNYIERASLIFDDLAEKSIDFRGALAKPFIQSLKKRVMEAVNFVLESDASLLN 764

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRI----DLLKSGFVDITDYKT---------GDN 923
                 +V     + IE+ GI   G  DR     D        I DYKT         G  
Sbjct: 765  GYAPKWVEE--WIEIENDGILYRGKIDRASFPQDERSG---VIIDYKTNNMPAYSSYGKK 819

Query: 924  PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK-----QKFKIDCITNDK 978
                   +L D Q+ +     ++    +I       L +++ K        +   +T   
Sbjct: 820  NSSVEEIELTDFQIPMYIFLAESKLNQKI--EHAWFLSFVQQKINKVVNDNEAIPVTRSG 877

Query: 979  KKYSADELSEKSLKNLIEIVTLLQN--GEQPFISHLRLSEKSNIQSEYDHLAR 1029
             + S ++  + S+   I            Q F     +S ++     + H+ R
Sbjct: 878  SERSREDF-QSSIDAFINEAERFAELVKNQDFTKPSSVSFETCSTCGFKHICR 929


>gi|118466570|ref|YP_881596.1| RecB family protein exonuclease [Mycobacterium avium 104]
 gi|118167857|gb|ABK68754.1| RecB family protein exonuclease [Mycobacterium avium 104]
          Length = 301

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 73/253 (28%), Gaps = 17/253 (6%)

Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
           QP  ++    P  +      S S        P     R I +L              RG+
Sbjct: 4   QPEARQSAARPAGQVSRPALSPSRAADFKQCPLLYRFRAIDRLPE-----APSPAQLRGS 58

Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII----WRHLFHKISHS 866
           L H  + +L +    +  PE    +                 D+      + L    +  
Sbjct: 59  LVHAALQQLYELPAAQRGPETALALVGPAWEQLLAATPELTADLDPTQHGQLLAEAQALL 118

Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
              +  +  +  +        ++ +    + L GF DRID+  +G + + DYKTG  P  
Sbjct: 119 AGYYRLEDPTRFDPQCCEERVEVELADGTL-LRGFIDRIDVAATGELRVVDYKTGKAPPA 177

Query: 927 ETAQKLID--PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
             A        Q+   A AL               L  I L     +D      +    +
Sbjct: 178 ARALAEFKAMFQMKFYAVALLRS-----RGVPPTRLRLIYLADGQVLDYSPEYDELLRFE 232

Query: 985 ELSEKSLKNLIEI 997
           +      + +   
Sbjct: 233 KTLMAIWRAIQSA 245


>gi|254509530|ref|ZP_05121597.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium
            KLH11]
 gi|221533241|gb|EEE36229.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium
            KLH11]
          Length = 1119

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 82/887 (9%), Positives = 217/887 (24%), Gaps = 118/887 (13%)

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
            R+L +   +L+      +         P       A A  +   L  ++  +E   ++  
Sbjct: 266  RILPVLESVLLTGKSAKEPFTAKIGSFPTKALREGALADRM-PQLEALMLRVEAAREQRL 324

Query: 168  DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA-----LMRAEAEHL 222
             L A +       +  A  FL    +   +    L+    +           +     + 
Sbjct: 325  ALVAAQKTHVLHRFAAA--FLPEYERR-KQMRGWLDFDDLILRARQVLNDPAVAEWVLYR 381

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNT 273
            + G    I++  +  + P    ++  +A                +    D       +  
Sbjct: 382  LDGGIDHILVDEAQDTSPDQWDVIEKLAQEFTSGEGARSGVERTIFVVGDKKQSIYSFQG 441

Query: 274  ITEKSTNITSSNTTYSTH----------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
               ++ +   +                  +YS       L +     +            
Sbjct: 442  ADPQAFDQMQAEFGRKLQESGSKLWDFTLEYSFRSSSAILSLVDILFENRIEAGFHKDAL 501

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
                                + +    +              +    A  +A ++R  +D
Sbjct: 502  HRAFKADLPGRVDLWPVVEKVEDEVDGDWTDPVD--RPGARHHTVILAEQVAKSIRAMID 559

Query: 384  --------------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
                                +      L+    +L   +       G+ I  +  + +  
Sbjct: 560  GETTIPDDGEAPGAFVRRKVQPGDFLILVQRRSDLFAEIIRACKSEGLPIAGADRLKVGA 619

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
             L    L +LL+ +    D +++AT++K  L  +   + +    +   E       ++  
Sbjct: 620  ELAVKDLAALLSFLATPEDSLSLATVLKSSLFGWSEQQLFDLAHRRK-EAFLWAALRSRG 678

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
            +       VL+ +  Q +         R+         LL     +    +    +   +
Sbjct: 679  EEFPETLAVLNDLRGQTDFLRPYDLIERILTRHGGRQKLLGRLGAEAEDGINALLSQALA 738

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                                           +W + +   +    S +      +  +  
Sbjct: 739  YERT------------------DIPSLTGFLVWMQTDDLEIKRQMSGVGNMIRVMTVHGS 780

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
            + ++    ++     + +  + + + + G      L  D       +     +   +N  
Sbjct: 781  KGLEAPIVILPDTGKR-QPPRDAEIMMAGETPLWKLPSDASPALVSSAREEARTREEN-- 837

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
                               +    +         +   +  +       S W Q +    
Sbjct: 838  ------------------ERLRLLYVALTRAEKWLIVAAAGDVGKDG--SSWYQLVEAAM 877

Query: 724  GTDFFDNLKKRGQCYLDW--TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                   +       L       L    +Q      +  P    QP   + ++ + L   
Sbjct: 878  ERAGAAPIPGPQIRRLAHGNWDALPLAAQQQTAHSKQDLPAYFHQPAPEAPAQAETLSPS 937

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
                      K       + +     RGT  H ++  L     ++     + L+  + D+
Sbjct: 938  DLG-----GAKALPGEAGRDEEAVKQRGTRMHLLLEHLPAVTQDQWPQLCDRLLADMQDT 992

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
                                 +  +         +++ ++ V+             L G 
Sbjct: 993  E----------RSELLDEATAVLTAGHLKHIFTPAALTEVAVSADFHGT------RLHGV 1036

Query: 902  ADRIDLLKSGFVDITDYKTG-DNPKKETA-QKLIDPQLSLEAAALKA 946
             DR+ +     V + D+K+    P         +  Q+   A A+  
Sbjct: 1037 IDRLIISGD-EVQVIDFKSNTTVPDGPETCPDGLLRQMGAYAHAMAQ 1082


>gi|154247228|ref|YP_001418186.1| double-strand break repair helicase AddA [Xanthobacter autotrophicus
            Py2]
 gi|154161313|gb|ABS68529.1| Double-strand break repair helicase AddA [Xanthobacter autotrophicus
            Py2]
          Length = 1167

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 88/855 (10%), Positives = 190/855 (22%), Gaps = 99/855 (11%)

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
               A  LA  L D  D +            L   +       A      A + +      
Sbjct: 323  ADRAPGLAARLRDERDRLAVLA------DQLLGARTLERTEAALTLAAEAVRRYEAEKAA 376

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTK------GPIIIAGSTGSIPATARLMSTVA----- 250
                      +   +  ++               I++  +  + P   R++  +A     
Sbjct: 377  RGLLDFDDLIVKAAQLLSDQPTFVQYKLDQGIDHILVDEAQDTSPQQWRVVQGLADDFFS 436

Query: 251  ----NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY------------ 294
                       +    D       +     ++     S       PQ             
Sbjct: 437  GAGAREDVTRTLFVVGDEKQSIFSFQGADPRAFGEMRSTFARKAGPQALRRVELPHSFRS 496

Query: 295  ----------SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                        ++      +  + V  +           + I  +  P   +   N   
Sbjct: 497  APGVLEAVDQIFSRPEAHDGLTLDAVAPVHAAIRADAPALVEIWPTTTPEPATQPDNWRR 556

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD----RNLAR 400
              ++ P           I    +   A  +AI  R           ++            
Sbjct: 557  PLDEAPVDDPVSRLAQRIAGFIQAGIAKGLAIPSRQGRPMRAGDVLVLVRRRGRVFEAVI 616

Query: 401  RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            R   EL    + +  +  + ++  + +  L +L + +   +D +A+A L+K PL      
Sbjct: 617  RALKELKDAQVEVAGADRLVVAEHIAALDLMALGDTLVSPDDDLALAALLKSPLFGLTDD 676

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
            +        +  LV                  L     +        + +R+   D    
Sbjct: 677  DLLALCTGRSGRLVDALKAAPDPR-HAAAWARLAAWRGEAALLRPFDFYARVLGRDGGRR 735

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
             +L     +    L  +     +       S                        +    
Sbjct: 736  AMLARLGPEAADVLDEFMVLARAYESTEPASLA------------------GFLAYLRRG 777

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
            G                +  +  + ++    ++      PK   +  L            
Sbjct: 778  GAETKRDMESGRNEVRVMTVHGAKGLEAPIVILADTVDMPKARTAGGLVS---------- 827

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY- 699
                      EG  P    +       + +      A +        +         +  
Sbjct: 828  ------VAGPEGEVPVLAPRKAEDPERLAAARATAAARELEEHRRLLYVALTRAEDAVIV 881

Query: 700  ----TRSLRENNIPTIASRWLQRL--LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
                TRS  ++            L    L       N        L W +        P 
Sbjct: 882  CGAETRSPAKDKAHARPEGCWYELVRAALAPEADEQNALGFEGQVLRWNKGPGLAVAGPA 941

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                                          +            P  +       RG L H
Sbjct: 942  AAPSAAGAEPALPIFANPPPPEAAPRLLRPSKTEAAGPSPLRTPGPETALSPLVRGDLVH 1001

Query: 814  NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
             ++  L      +       L++   D   ++ +     + +       ++  F      
Sbjct: 1002 RLLAGLPDLPAQERAAAGLRLLRHAADKVADEIHQEVLEEALGVLGHAPLADLFGAGSRA 1061

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK--KETAQK 931
                I ++          E    H++G  DR+ +     + + D+KT   P    E   +
Sbjct: 1062 EVPVIGRLKAQ-------EGADFHVSGRIDRLAVTPD-LLIVADFKTDRIPPQRPEDVAE 1113

Query: 932  LIDPQLSLEAAALKA 946
                QL++  A L  
Sbjct: 1114 AYVAQLAVYGALLSQ 1128


>gi|300782729|ref|YP_003763020.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis
           mediterranei U32]
 gi|299792243|gb|ADJ42618.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis
           mediterranei U32]
          Length = 804

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 80/687 (11%), Positives = 185/687 (26%), Gaps = 88/687 (12%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+R     + G+++  +  + +   +                  V  ++R 
Sbjct: 78  ITFTNKAAAEMRERVAALVGRRANAM-WVSTFHSMC-----------------VRILRRE 119

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            ++  +   +     D  K L       L I P      A+ LA  I  ++ E    E  
Sbjct: 120 AKVLDMSSSFSIYDSDDTKRLITLVARDLDIDPKRYA--ARTLAVHISNLKNELTDPETA 177

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMK 224
            A                +      +  RL + NA       +  +             +
Sbjct: 178 AANAGNDLERR-------VAEVYGEYQRRLNQANAFDFDDLIMRTVSLLQTFPDVAEYYR 230

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHP------NGAIVLPGLDCHIPTAIWNTITEKS 278
                +++     +  A   L+  +A           A ++   D       +   T ++
Sbjct: 231 RRFRHVLVDEYQDTNHAQYTLVRELAGTAPNEAGVEPAELVVVGDADQSIYAFRGATIRN 290

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +                 L+      + + N +N +  R+       L  D+ D
Sbjct: 291 IEEFERDFP---------NAHTILLEQNYRSTQTILNAANAVIERNPNRRAKRLWTDSGD 341

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITAD 395
                               +    ADN+ +EA  +A    AL    + +    A+    
Sbjct: 342 G-----------------EKIVGYVADNDHDEAAFVAGEIDALAEKGEADYSDVAVFYRT 384

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            N +R  +    R G+   +  G+          + + L  +    D +++  ++  P  
Sbjct: 385 NNQSRVFEEIFIRLGLPYKVVGGVRFYERREVRDMIAYLRVLANPEDTVSLRRVLNVPKR 444

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G   + +       E ++            L+  V  ++      +           +
Sbjct: 445 GIGDRAEAVVATHAERERISFA--------QALRDAVEGKVPLLNPRSVKAIGGFVAMLD 496

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
           +  + V     +   +  ++     +     +    D T+  V  L  +           
Sbjct: 497 ELGMLVADGAEVHDVLEAVLDKTGYRIELEESEDPQDHTR--VENLDELVTVAREFTEIT 554

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                 +    +    +     + A    +  +     +   +  +     +  + ++  
Sbjct: 555 AEVAADENAEPVVEDGVPAPGSLPAFLERVSLVADADSVPSPDGGEEGDGGAGVVTLMTV 614

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L +  +   G  +GV+P   A                  E+ +   A        
Sbjct: 615 HTAKGLEYPVVFCTGWEDGVFPHMRALGDPAE---------LAEERRLAYVAITRARKRL 665

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLL 720
                 TRS         ASR+L  L 
Sbjct: 666 YVSRAITRSAWGQPSMNPASRFLDELP 692


>gi|329943325|ref|ZP_08292099.1| ATP-dependent DNA helicase pcrA [Chlamydophila psittaci Cal10]
 gi|332287901|ref|YP_004422802.1| ATP-dependent DNA helicase [Chlamydophila psittaci 6BC]
 gi|313848473|emb|CBY17477.1| DNA helicase II, UvrD [Chlamydophila psittaci RD1]
 gi|325507016|gb|ADZ18654.1| ATP-dependent DNA helicase [Chlamydophila psittaci 6BC]
 gi|328814872|gb|EGF84862.1| ATP-dependent DNA helicase pcrA [Chlamydophila psittaci Cal10]
 gi|328915165|gb|AEB55998.1| ATP-dependent helicase PcrA [Chlamydophila psittaci 6BC]
          Length = 637

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 77/687 (11%), Positives = 178/687 (25%), Gaps = 118/687 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKK-STILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            +     T +A +EL+   + +  +   + +P++ +   +                    
Sbjct: 51  EILAVTFTNKAAKELKERILHLCPQAHGSDIPMVCTFHSLG------------------- 91

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETE 162
               +  L R I     +   II D      L         +   L+ ++   I   +  
Sbjct: 92  ----VFILRRSIQALNRENNFIIYDQSDTDKLLKQCLQKFNLKKTLSSSIQYHISQAKNR 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA----- 217
               EDL     E+Y    +          K + +RL E NA          +R      
Sbjct: 148 LLSPEDL---DPEEYIDPVVS-------IYKEYQQRLHEANALDFDDLLFLTVRLFQEFP 197

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           E           ++I     +  A  ++  T+A       +    D       W      
Sbjct: 198 EVRKEYSELWKALLIDEYQDTNHAQYKIAQTIAGKHQN--IFAVGDPDQSIYSWRGANIH 255

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +             L+  L+        + N +N +   +             
Sbjct: 256 NILNFEKDYP---------RALVLRLEDNYRSYGNILNAANALIQNNAS----------- 295

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITA 394
                  L+  + +++     + +     ++EEA  +A  +               +   
Sbjct: 296 ------RLKKDLRSVKGPGEKIRVFLGKTDKEEAEFVADEISRLHRRSQIPLSDICIFYR 349

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R  +  L R  I  +I  G+          + + L      +D +A    V  P 
Sbjct: 350 TNFQSRTFEDALLRRRIPYEILGGLSFYKRKEIQDILAFLRMFTAKSDVVAFDRTVNLPK 409

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G                             L + +    A            S+  +
Sbjct: 410 RGLGPSTISSL------------------IEYALTNNLPILEACNNVLKTQDVKLSKKQQ 451

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           E     + +   +      L               ++++   T+       + +      
Sbjct: 452 EGLREYLSIFQQLEHAYATL--------------PLNEFVVATIRITGYFQVLKEDPDTF 497

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
              +     L+S   +  +  +          + +  L    +       +  + ++   
Sbjct: 498 EDRKSNLDELASKTFEWEQQNTDGTLE-----NFLDDLALKSSTDDTELVADRVNLMTIH 552

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
             + L F    + GL E ++P   +K  + +   +  L      +     A D       
Sbjct: 553 NGKGLEFRIAFVVGLEENLFPHANSKGSYENLEEERRLCYVGITR-----AQDLLYLTAA 607

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLV 721
           +      ++R        SR+L+ +  
Sbjct: 608 QTRFLWGTVRVMK----PSRFLKEIPR 630


>gi|160945992|ref|ZP_02093218.1| hypothetical protein FAEPRAM212_03525 [Faecalibacterium prausnitzii
            M21/2]
 gi|158443723|gb|EDP20728.1| hypothetical protein FAEPRAM212_03525 [Faecalibacterium prausnitzii
            M21/2]
          Length = 1228

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 93/909 (10%), Positives = 205/909 (22%), Gaps = 145/909 (15%)

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
            +   A + + +       E       +            ++     +T R  E       
Sbjct: 331  SDEAAALFEQMTQLICCSEAEAETDRQITLPRLRALFAAVRDFDARFTARKRERKLLEFS 390

Query: 209  GYQIALMRAEAEHLMKGTK---------GPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
             ++   +R       K T            +++     +      L   +A  P G  + 
Sbjct: 391  DFEHLALRLLRTPEGKPTPLCENIRQDYAAVMVDEYQDTNALQDALYRCLA-APAGDNLF 449

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE-DVKRLGNVSN 318
               D       +             +       +                 +      + 
Sbjct: 450  LVGDLKQSIYRFRQAEPGIFRQKLDSWPLLPGAKARPRPPEGTPGTDALLALDANFRSAP 509

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE--AISIAI 376
            ++        +  + P+  D    D          +    V +    ++  E  A  IA 
Sbjct: 510  QVVAGINYFFEQLMTPELGDTAYGDGQRLVCGAPGEYQGSVEVQFLPDDETETDAGWIAE 569

Query: 377  ALRMSLDE-------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
             +   +                 +   ++ A R         LT  GI +   A   L  
Sbjct: 570  RIAQLVSAGEPVREGSTTRPVRYEDCCVLLAARTEFPAYVEALTARGIPVYADARENLML 629

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
              H   L +LL  I   +  + +A  +  P+  F   +    RA++              
Sbjct: 630  APHIRPLIALLKVIDDPSQDIYLAAAMLGPMFGFTEDDLVRLRARSR---QVQAEPDKKP 686

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
              + L   +L  +    ++      +                           + T    
Sbjct: 687  ARISLYGALLLALEDPADDPFTEKVKDFY-----------------------AHLTALRQ 723

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
               +       +        +      +      E+  +  S            I A   
Sbjct: 724  MARSAPAEQLLEEIFASTGYLAALGVLENGARRREDARRFASFC---ATSGAGGISALVR 780

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                       G+   P       + I+    S+ L F  + +G         +  +   
Sbjct: 781  AIDAAAQAGSTGQDTVPSGVHPGCVSIMTIHRSKGLQFPVVFVGDTARKFNASDIRQPVL 840

Query: 664  LSRVMQSDLNLKT--------------------AEKYIGQAAHDFEMANGTRHLIYTRSL 703
            + R   + L L+                      E    Q    +      +  +     
Sbjct: 841  VHRTFGAGLRLRPENGEGAYKTAAYTALANVHARELRSEQMRLLYVALTRAQDKLILTVP 900

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL------------------------ 739
              +             L  G              +L                        
Sbjct: 901  MSSGKSAKPFAKAAAFLAAGAGATLHQQANSFADWLRAALLVHPDGGMLRQLSGNRELLF 960

Query: 740  -------------DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI--KQLINDPYA 784
                         D  +  +        + P+    L  + R     +     L   P  
Sbjct: 961  VQTESVMAIRVCDDAVQLSEKPDADTENEVPETDLALVEKLRQGFAWQYPAAALAQVPAK 1020

Query: 785  VYARRILKLDFIPHFK-------KDPDRTDRGTLFHNIIT--ELIKKRINKNTPEINHLM 835
            V    I+        +             + GT  H  +   +  +    K    ++  +
Sbjct: 1021 VSVTSIVHKAEQTTLERPGFLSKDGLTAAEMGTALHAFLEHADFARLAAAKAAGTLDEAI 1080

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE-KIQSSIEKIFVNIPAKMAIESI 894
                D     +   P I      +       F+E E      + +++   +P   A+ + 
Sbjct: 1081 PAERDRQVAVQLTAPEIAEKLDAVC---IRRFVESEAFAKICAAQQVLRELPFITALPAG 1137

Query: 895  -----------------GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937
                              + + G AD + +     +++ DYKT     +    +    QL
Sbjct: 1138 AVLAAQGHEELPAAADAQVLVQGIADLVLVYPD-HLELLDYKTDRRKAESDFLRAYRAQL 1196

Query: 938  SLEAAALKA 946
            +L A A++ 
Sbjct: 1197 NLYAIAIEK 1205


>gi|269795394|ref|YP_003314849.1| RecB family exonuclease [Sanguibacter keddieii DSM 10542]
 gi|269097579|gb|ACZ22015.1| RecB family exonuclease [Sanguibacter keddieii DSM 10542]
          Length = 297

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 76/261 (29%), Gaps = 21/261 (8%)

Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
           D            P      +    S S        P     R + +L            
Sbjct: 5   DPLPVLADVPAQPPAASPAPRRPGLSPSRANDFTQCPLLFRFRVVDRLPEP-----PSSA 59

Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL-------PPHIDIIWRH 858
             RGTL H+++  L    + + T E+   +         + +               W  
Sbjct: 60  AARGTLVHSVLERLYDAPLGERTVELAQSLIPGEWDRLREASPEYGELFADAAQTEGWLD 119

Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
              ++  ++   E+  +  +E        +  ++   + + G  DRID+  +G V + DY
Sbjct: 120 GAGRLVSTYFTLEDPNR--LEPESRETFVESQLDGGPL-MRGIVDRIDVAPNGAVRVVDY 176

Query: 919 KTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
           K+G +P+        + Q+      L               L  + L     +     + 
Sbjct: 177 KSGKSPRPG-YAGSAEFQMRFYGLVLWRE-----RGEIPKMLQLVYLGDGQVLRSEPTEA 230

Query: 979 KKYSADELSEKSLKNLIEIVT 999
           +  + ++       ++    T
Sbjct: 231 QLLATEQKVRTIWTSIETAAT 251


>gi|320449643|ref|YP_004201739.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
 gi|320149812|gb|ADW21190.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
          Length = 708

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/537 (11%), Positives = 129/537 (24%), Gaps = 76/537 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+R     +      +   + +                        
Sbjct: 62  SEILAVTFTNKAAEEMRERLKRMVKGGGEL--WVSTFHSAALRILR-------------- 105

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN---LADIIDIIET 161
                      +   R  L         +   +L       + LA     L  ++D  + 
Sbjct: 106 -----------VYGERVGLKPGFVVYDEDDQTALIKEVLKELGLAARPGPLKALLDRAKN 154

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
             +  E L +   + Y     L+   L    K + E L    A       +  +R   E 
Sbjct: 155 RGEAPESLLSELPDYYAG---LSRGRLLDVLKRYEEALKAQGALDFGDILLYALRLLEED 211

Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                  +     I +     + P   R    +A     A ++   D       +     
Sbjct: 212 PEVLKRVRRRARFIHVDEYQDTNPVQYRFTKLLAGEE--ANLMAVGDPDQGIYSFRAADI 269

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           K+    + +                            G     +              + 
Sbjct: 270 KNILEFTRDFP--------------------------GAKVYRLEENYRSTEAILRFANA 303

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
             + N   LE  +  ++     V L  A + R+EA  +A  +   L     + A++    
Sbjct: 304 LIVNNALRLEKTLRPVKPGGEPVRLYRARDARDEARFVAEEILR-LGPPFDRVAVLYRTN 362

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  L   G+   +  G+          L +         D +++  ++  P   
Sbjct: 363 AQSRLLEQTLASRGVPARVVGGVGFFERAEVKDLLAYARLSLNPLDGVSLKRVLNTPPRG 422

Query: 457 FGFPEKYLSRAKNA-----LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            G        A        L        +       L+  +      Q+          R
Sbjct: 423 IGPATVEKVEALAREKGLPLFEALRVAAEVLPRPAPLRHFLALMEELQELAFGPAEGFFR 482

Query: 512 LSEEDKELAVLLVDHIL----QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
              E  +    L +         +  +           G +   D   LT    +  
Sbjct: 483 HLLEATDYPAYLREAYPEDYEDRLENVEELLRAAKEAEGLMEFLDKVALTARAEEPG 539


>gi|254465049|ref|ZP_05078460.1| double-strand break repair helicase AddA [Rhodobacterales bacterium
            Y4I]
 gi|206685957|gb|EDZ46439.1| double-strand break repair helicase AddA [Rhodobacterales bacterium
            Y4I]
          Length = 1117

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 78/844 (9%), Positives = 197/844 (23%), Gaps = 109/844 (12%)

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
            + L   L  ++  +E    K   L A +       +  A  FL    +   +    L+  
Sbjct: 301  LSLMDQLEPLMRRVEDARAKRLALTAARKSHDLHRFAAA--FLPEYERR-KQLRGWLDFD 357

Query: 206  SPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA---------N 251
              +     L+      A   + + G    I++  +  + P    ++  +A          
Sbjct: 358  DLILKARQLLNDPGVAAWVLYRLDGGIDHILVDEAQDTSPVQWDVIEKLAQEFTAGEGAR 417

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT--YSTHPQYSLAKLLDFLDIKRED 309
                  +    D       +      + +          +          LDF       
Sbjct: 418  SDVERTIFVVGDKKQSIYSFQGADPDAFDRMQQEFGNRLAETGAGLQDASLDFSFRSSAA 477

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV--ALIEADNE 367
            + +L ++      R+     +      SD+     L   +  ++        + ++  + 
Sbjct: 478  ILKLVDLVFRDSPRAGFRKDALHQAFKSDLPGRVDLWPVVGKVEDDEDPDWTSPVDRPSS 537

Query: 368  REEAISIAIALRMSLDE------------------------NKKKSALITADRNLARRVK 403
            R   + +A  +  S+ +                              L+    +L   + 
Sbjct: 538  RHHTVILAERIARSIKQMIYTGATIPEDGPERGTFQRRPVQAGDFLILVQRRSDLFSEII 597

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
                +  + I  +  + +   L    + +LL  +    D +++A  +K PL  +     +
Sbjct: 598  RACKKAELPIAGADRLKVGAELAVKDIAALLRFLALPEDSLSLAEALKSPLFGWTEQALF 657

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                +           +           VL+ +    +         R+         LL
Sbjct: 658  DLAHRREAMY-LWPALRGRAAEFPETMAVLNDLRANADFLRPYDLIERILTRHGGRQKLL 716

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                 +    +    +   +                               +W + +   
Sbjct: 717  GRLGPEAEDGINALLSQALAYERT------------------DVPSLTGFLVWMQTDDLE 758

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            +             +  +  + ++    ++     + +  + + + +        L  D 
Sbjct: 759  IKRQMGAAGNMIRVMSVHGSKGLEAPIVILPDTAKR-QPPRDAEIMLADGTPVWKLPKDQ 817

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
                                +   M +       +    +    +         +   S 
Sbjct: 818  --------------------MPPAMLAAREAAQEKLQNERLRLLYVALTRAEKWLIVASA 857

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
             E      +   L    +  G     +        L            P           
Sbjct: 858  GEVGEQGDSWYRLTERAMRDGGATEFDTVGGTGLRLQHGDWDGLPLVLPEAIEAAKHELP 917

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
            E   R             P  +   + L          +     RG+  H ++  L  + 
Sbjct: 918  EVFTRPARAYAAPAPALSPSDLGGAKAL---PGDQGLDEEAAKARGSRLHLLLEHLPGRA 974

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
                     +L++   D                       + + L +             
Sbjct: 975  DADWPQLAQNLLQGAGD----------------CAELLAEASAVLRNAALADVFHPDTLA 1018

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEA 941
             +P    +      L G  DR+ +     V   D+K+        E   + +  Q+   A
Sbjct: 1019 EVPITADLNGA--RLHGIIDRLIITPE-SVLAVDFKSNATVPAAPEQCPEGLLRQMGAYA 1075

Query: 942  AALK 945
             AL 
Sbjct: 1076 HALA 1079


>gi|163753956|ref|ZP_02161079.1| UvrD/REP helicase [Kordia algicida OT-1]
 gi|161326170|gb|EDP97496.1| UvrD/REP helicase [Kordia algicida OT-1]
          Length = 969

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 102/353 (28%), Gaps = 30/353 (8%)

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             +  +    ++      +   S  +  +   +S+ L F  + + G+           + 
Sbjct: 559 RFFRFLNDGGLEEFEDFDEYAPSGCVSFMTIHQSKGLEFPIVFV-GMPTNRQGPRKQYDD 617

Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
               + +   +    E       +DF     T    ++R      +    +R  + ++  
Sbjct: 618 VDELLQEEYYHKPPFEPLEEVKYYDFWRLYYT---AFSRPQNVLVLGNYETRNAKGIVN- 673

Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
                  +   +   + +             Y   +  P       +++ S I    N P
Sbjct: 674 SPHKLLQDSYAKAPHWRN------ENVDITKYDLAEIKPTNIKHEYSFT-SHILLYENCP 726

Query: 783 --YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             Y  Y         +   +        G L H  I ++ K  +      + +   +   
Sbjct: 727 LQYKFY-------KELEFTEVRTGGVLGGQLLHQTIEDIHKAVLKDEVHTLTNENIEAWF 779

Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
           +             +       +    L + +K  +  +KI V     +++      L G
Sbjct: 780 NTNYHLLTKQQKSYLHLPQRKALLKQILNYRDKNSNDWDKI-VEAEVDVSLVKEDYILKG 838

Query: 901 FADRIDLLKSGFVDITDYKTGDNPKKETAQKL-------IDPQLSLEAAALKA 946
             D I   ++  V++ D+K+G  P      +L          QL + A  ++ 
Sbjct: 839 TIDLI-RGENNTVELIDFKSGSKPDVNATDELTRGLLDRYRRQLEVYAHLVEE 890


>gi|118580564|ref|YP_901814.1| exodeoxyribonuclease V subunit gamma [Pelobacter propionicus DSM
           2379]
 gi|118503274|gb|ABK99756.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Pelobacter
           propionicus DSM 2379]
          Length = 1061

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 89/870 (10%), Positives = 210/870 (24%), Gaps = 96/870 (11%)

Query: 19  REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78
             ++ AL +          P  P +L      V +K   + L  +  E  G         
Sbjct: 12  ENLVEALCDVLKTPL--SSPFTPEIL-----VVQSKGMQRWLAMKLAETFG---VWANCT 61

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
               + V  +               S       +  L+  +        +       L  
Sbjct: 62  YPFPNKVVWELFMKAFPELPDTSRFSPEVMTWRIMGLLPAF----LGRQEFTPLNHYLDG 117

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                    LA  +AD  D           L   +  K    W             W E 
Sbjct: 118 DGDGLKKFQLAGKIADTFDQYTLFR--PNMLLDWEGGKG-GDWQELL---------WREL 165

Query: 199 LVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
               N       +   ++  A+     +     I++ G +        + + +A H   +
Sbjct: 166 ATADNGQHRGRIKQDFIKLLAQGHAEKESLPERIMVFGISYLPSYHLDIFTEIAKHTTVS 225

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS----LAKLLDFLDIKREDVKR 312
           + L          I +                  +P  +    LA+    + ++   +  
Sbjct: 226 LFLLSPCRQYWGDIVSAKQMSRRPPEERAYLEEGNPLLASLGKLARDFSNMVVEAGSIAT 285

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                    G  +++                   +    I      V +    +   E  
Sbjct: 286 DDVDLYLDPGEGLLLEAIQSDILNLRGTE---GGDSKRRISPQDRSVQIHACHSPMREIE 342

Query: 373 SIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLS 422
            +   L   L++      +   ++T D          +          I   I+      
Sbjct: 343 VLHDNLLFLLEQEKGLTPRDIIVMTPDIETYSPYISMVFGGCQDPLKKIPFSIADRTLAK 402

Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKH-PLAKFGFPEKYLSRAKN---ALELVALRG 478
               +S++  LL           +  +++  P+++    +               +    
Sbjct: 403 EGQIASVILKLLELPGSRLSVTRVFDILQSAPVSRRFDLDIQELETVRSWIEDTRIRWGA 462

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV-------LLVDHILQCI 531
           +++    + L     +      +   + +      +      +            + +  
Sbjct: 463 DESHRSSLGLPHYRENSWRAGLDRLMLGYAMPEEGDFLFHGILPYDEMEGDATQALGKLA 522

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             +   +          ++++W     T L +    +      L        + SL    
Sbjct: 523 EFVARIERLARDLAAKRTLTEWRDAITTMLSDFAAADDDLAHELASING--VVQSLEDLG 580

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            + G     + +     +   +  E           +     L  R + F  + L G+N+
Sbjct: 581 AKAGFSETVDLVVIRSWLASRLGEEEKGLGFLTG-GVTFCAMLPMRSIPFRVVCLIGMND 639

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE--MANGTRHLIYTRSLRE--NN 707
             +P+ +    F    + +            +  + F   + +   H   +   +   +N
Sbjct: 640 AAFPRQSRPPGF---DLIARNPQPGDRSLRDEDRYLFLECLLSARTHFYLSYVGQSVKDN 696

Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW-------------------------T 742
                S  +   L   G  F        Q  +                            
Sbjct: 697 SAIPPSVLVSEFLDAIGAGFTSGEMTLEQRLVTSHRLQAFSRSYFDATSGLFSYSAENCA 756

Query: 743 RKLDYTTK--QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP--- 797
             LD T +  +P      P      + R  + +++ +   +P        LK+       
Sbjct: 757 ALLDATQRSGEPALFITHPLKAAPEEMREVTLAQLVRFYANPAKYLLENRLKIRLEEVST 816

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKN 827
                      G   + I  EL++KR+   
Sbjct: 817 PLDDREPFAVEGLEAYGINQELLEKRLQGG 846


>gi|194367719|ref|YP_002030329.1| DNA-dependent helicase II [Stenotrophomonas maltophilia R551-3]
 gi|194350523|gb|ACF53646.1| DNA helicase II [Stenotrophomonas maltophilia R551-3]
          Length = 730

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 74/722 (10%), Positives = 180/722 (24%), Gaps = 121/722 (16%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+R          S  +  I +   +                         
Sbjct: 60  VTFTNKAAGEMRHRIDAQLPNGSRGM-WIGTFHGLANRLLRLHWQD-------------- 104

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL------AKNLADIIDIIETEE 163
                       KLP+  + +  +  L L      A+ L      AK +A  I+  + E 
Sbjct: 105 -----------AKLPEGFQVMDSDDQLRLVKRVVQALELDDGKYPAKQIAWWINAQKDEG 153

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
           ++ + +    ++          + ++ A   +  R             +       ++  
Sbjct: 154 RRPQHIQPEPHD-------AWLETMRQAYIEYQARCDRAGLVDFAELLLRAHELLRDNPA 206

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I++     +       +  +A   +   V    D       W     ++
Sbjct: 207 LLSHYRARFREILVDEFQDTNAIQYAFVRVLAG--DSGHVFVVGDDDQAIYGWRGAKVEN 264

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +                            G  +  +       +      +   
Sbjct: 265 VQGFLRDFP--------------------------GAQTIRLEQNYRSTANILGAANAVI 298

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADR 396
             N D +  ++         + L  A NE +EA  I    R  + +     + A++    
Sbjct: 299 AHNPDRIGKELWTDSGDGEPIDLYAAYNEMDEARYIVERARQWVRDGGSYTEVAVLYRSN 358

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  L    +   +  G+            + L  +   ND  A    V  P   
Sbjct: 359 AQSRALEEALLSEQVPYRVYGGMRFFERAEIKDALAYLRLLSNRNDDAAFERAVNTPTRG 418

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G       R +        R    S     +       +A +  N            + 
Sbjct: 419 IGDRTLDEVRREA-------RAQGISLWEATMLVTQGSALAARARNALAGFLVLVNELQA 471

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
           + L + L + +   +      +     +   L     T      +        R      
Sbjct: 472 QTLHMTLAERVDHVLARSQLREHWSKESRNALDSESRTDNLDELVSVASRFVRRADDIEE 531

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             E+   L +  +                                      + ++    +
Sbjct: 532 VGEDMDELVAFLAYAALEAGEG---------------------QAQAGEEGVQLMTLHSA 570

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + L GL EG++P   +              L+ + +   +    +      R 
Sbjct: 571 KGLEFPLVFLAGLEEGLFPSARS--------------LEESGRLEEERRLAYVGITRARQ 616

Query: 697 -LIYTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            L+ + +        +  ++ SR+L+ +      +    ++      +  +R + + + +
Sbjct: 617 KLVLSYAESRRIHGQDNYSLPSRFLREIPRELLHEVRPKVQVSRPASMGASRVMGHASIE 676

Query: 752 PH 753
             
Sbjct: 677 AP 678


>gi|327473788|gb|EGF19206.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK408]
          Length = 762

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 68/627 (10%), Positives = 171/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  +++    +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVDKIRNFAASQEISLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRERLDDYKVTELVEAVLEKTGYAASLAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  S  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPSD-ESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRAS 587


>gi|319789815|ref|YP_004151448.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1]
 gi|317114317|gb|ADU96807.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1]
          Length = 958

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 106/799 (13%), Positives = 203/799 (25%), Gaps = 104/799 (13%)

Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMR--AEAEHLMKGTKGPIIIAGSTGSIPATA 243
           + L  A   + E L E          I   +   EA   +  +    II     + P   
Sbjct: 244 ELLVKALARYDELLKENELLDYNSLLIKAEKLVREAPSEVLSSYRVFIIDEFQDTDPIQW 303

Query: 244 RLMSTVANHPNG----AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
           R++ T+            VL   D       + +      N               + + 
Sbjct: 304 RIIETLYEASQRGGSEISVLLVGDPKQSIYRFRSADVNLWN--------------RVKEW 349

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
           +     K  +         ++      + K      TS     D +  +          V
Sbjct: 350 VKEKGGKVTEKTENYRSGRKLLEFFNTVFKELYRKTTSHPAELDFVPFRPSERTAEGGQV 409

Query: 360 ALIE--ADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRVKLELTRFGINIDIS 416
            +I   + +    A  +  A+       ++  +A+I    +        L   GI     
Sbjct: 410 EVIPIKSLSSYGLAPFVRYAVSKLKPYAERGTAAVIARSWSALVPFARYLKENGIPFTYL 469

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
           +  P  +      L +LL      ND+ ++  L+                A + +E V  
Sbjct: 470 SSSPYRSE-AFEELLNLLKFTLNPNDYTSLFFLLTSRFLG-----LTHPEALDLVEEVKE 523

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
            G          + L   R   ++ + H    Q             L        + L+ 
Sbjct: 524 EGESPLLRYKLFRELKDFRSQLKERSVHPYSLQIYSLLLRLGYLSALRLSDPDSFSSLLD 583

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                ++     S +   +  V  L+ +  D           E G  L+      I +  
Sbjct: 584 LLWEIHTVETVESFT--FEELVHYLEGLGGDSA--SSAARVPERGFVLT-----TIHSSK 634

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
            ++ NA+              V P  +   +                      +E     
Sbjct: 635 GLEFNAV-------------AVVPWDKPRPSYSRFTYSNIGYAVKLHAPRYDFSEEEEHL 681

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
               N   S        L      + +    +      +  +                  
Sbjct: 682 KPFYNWCASPYFFYLQKLNDFLNRLEEKNLFYVALTRAKEALILGLKERGKGKFSTGSIT 741

Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
               +L G                    L    + P   RP      +  P     S   
Sbjct: 742 FDSSLLKGY-------------------LKQLPENPPAVRPDRSFVPKLLPE---PSVNH 779

Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
             I  P        L     PH       T+ G   H +    +K        +I+  + 
Sbjct: 780 IKIRRPSDHADPEELSTKENPHLPNGTSPTEYGDAAHALCEAFLKG------ADIDRAVN 833

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
             +       N  P ++   R L+ K+            +    +  +I  +  +  +  
Sbjct: 834 YALGHVL---NPTPSLEERLRELYRKL---------SSNNPF-PLEGSIRFETELPLLFY 880

Query: 897 H----LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
                L G AD +   + G V++ D+KTG   + +   KL   QL+  A   +   +   
Sbjct: 881 SEDSILRGRADLVFFKEGGSVEVWDFKTGLKEEAK--LKLYREQLTAYADVFRRAGY--- 935

Query: 953 DCRKVANLFYIRLKQKFKI 971
               V  L  + L +   +
Sbjct: 936 ---TVNRLVLLFLDEPPDV 951


>gi|188579666|ref|YP_001923111.1| UvrD/REP helicase [Methylobacterium populi BJ001]
 gi|179343164|gb|ACB78576.1| UvrD/REP helicase [Methylobacterium populi BJ001]
          Length = 798

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 82/712 (11%), Positives = 182/712 (25%), Gaps = 115/712 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E++     + G     +P + +   +  +                  
Sbjct: 93  DILSVTFTNKAAREMKHRIGGLIGPAGEGMPWLGTFHAIGTKI----------------- 135

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +  +    +     W A++LA  ID  +     
Sbjct: 136 LRRHAELVGLKSDFTILGTDDQLRLMKQ--VIADQNIDEKRWPARSLAHTIDGWKNRGLS 193

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK- 224
            E +      +   +       L  A +     L  ++    +   + L R   + L   
Sbjct: 194 PEQVP---PGEAQAFAFGKGGQLYAAYQARLATLNAVDFGDLLLLCLKLWRENPDILANY 250

Query: 225 -GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                 I++     +  A    +  +A        +   D       W      +     
Sbjct: 251 QDRFRYILVDEYQDTNVAQYLWLRLLAQARKNVACV--GDDDQSIYGWRGAEVDNILRFE 308

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +                            G     +                   +N  
Sbjct: 309 HDFP--------------------------GATVVRLERNYRSTGHILAAASGLIAKNEG 342

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALITADRNLARR 401
            L   +    +    V +  A +  EEA  +A ++           + A++       R 
Sbjct: 343 RLGKTLRTEDEAGEPVTVTGAWDSEEEARQVAESIESLQRRGHPLSEIAVLVRISAQMRE 402

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           ++    + G+   +  G             + L       D +A   +   P    G   
Sbjct: 403 IEDRFVQVGLPYRVIGGPRFYERAEIRDALAYLRVTMNGADDLAFERIFNTPKRGLGDAT 462

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                A                                +        +   ++E K  A 
Sbjct: 463 LQTLHAF---------------------------ARADRIPLLAAAGKLIETDELKPRAR 495

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            ++  +++  +  V     K       +I + +  T    ++   D   +L NL      
Sbjct: 496 SMLRGLVESFSRWVRLVGTKPHPEVAQTILEESGYTEMWQKDRSADAAGRLENL------ 549

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
                 F + +E    + A       ++                  + ++    ++ L F
Sbjct: 550 ----KEFVRSMEEFPDMAAFLEHVSLVMEASEAEGA--------DRVSLMTLHAAKGLEF 597

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
           DT+ L G  +G++P   A +         +      E+    A      A     L +  
Sbjct: 598 DTVFLPGWEDGLFPNQRAID---------ESGRAGLEEERRLAHVGLTRARKRAKLSFAV 648

Query: 702 SLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
           + R +     TI SR++  L          ++ +    +     + D     
Sbjct: 649 NRRIHGLWSSTIPSRFIDEL-----PPQAVDVIEAPAHFSAGASRFDRNPAP 695


>gi|239907371|ref|YP_002954112.1| hypothetical protein DMR_27350 [Desulfovibrio magneticus RS-1]
 gi|239797237|dbj|BAH76226.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 265

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 79/274 (28%), Gaps = 37/274 (13%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR------ 823
             S S I   ++        +I K        +       GT  H II     +R      
Sbjct: 10   LSASSINSYLDCGLQFKFAKIDK-REPEAIAE---ALIFGTTIHKIIELYHHERSIGTRL 65

Query: 824  ------INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
                              +Q     F++        +  + L       F E        
Sbjct: 66   SVMDVTAAFEKCYTEAFEQQAGKIQFKEGKDFDSTLLEGKSLLATYVTQFPET------G 119

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936
            ++ I +       IE + I + G  D ++    G + I D+KT       +   K    Q
Sbjct: 120  LKVIGLEKAFSFQIEGVPIPIVGVMDMVEEDAGGNIVIVDHKTSSRSYSSDDIDK--SLQ 177

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L++   A KA  ++  +         I L+    +       ++Y      E  L+ + +
Sbjct: 178  LTIYGMAAKANGYADRE---------IMLRFDCLVKTKKPKFEQYYTVRTEEDELRAMKK 228

Query: 997  IVTLLQNGEQP-FISHLRLSEKSNIQSEYDHLAR 1029
            I  + +   Q  FI     +        Y    R
Sbjct: 229  IQAVYRGIMQGVFI--PNDTSWKCKGCSYQQCCR 260


>gi|315185499|gb|EFU19269.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
          Length = 683

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/688 (10%), Positives = 174/688 (25%), Gaps = 138/688 (20%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+     T +A +E+    ++++ +   ++  IK+                         
Sbjct: 56  SILAVTFTNKAAREMYERALQLSPRTEGVM--IKTFHSFGVWLLRLYGE----------- 102

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
               L LAR   I+ +   +  + L             +    A      I   +     
Sbjct: 103 ---RLGLARDFAIYDD---EDARALLSSILDGSQRRHLSRYAWA------ISRAKDYALG 150

Query: 166 W-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             +DL ++  +                   + +RL +          +  +R   EH   
Sbjct: 151 PEDDLSSILEDDDFPE----------LYARYEDRLRDTGNVDFGDLILLPLRLLKEHEDV 200

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     +++     S  A   L+  +        +    D       +     ++ 
Sbjct: 201 RRKVHAAFRVVMVDEYQDSNVAQFFLLRELYGPE--TYLCVVGDEDQSIYRFRGAEVRNI 258

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                                             G     +                   
Sbjct: 259 LDFPDAFE--------------------------GTHIVRLETNYRSTETILRAASGVIA 292

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
            N   L   +  I++    + ++   +  EEA   A   R   +E  +  A++      +
Sbjct: 293 HNEGRLGKTLRPIRQGGDVIRILSFPSAEEEA---AYWARFLREEGWEDVAVLYRAHYQS 349

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           R ++L L R G+   +   +          L + L  +    D ++   ++  P      
Sbjct: 350 RLLELALAREGVPYRVVGSLRFYEREEVKDLLAFLRLVLNPRDEVSFLRVINKP------ 403

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                                 +     + S      +T            +      E 
Sbjct: 404 -----------------PRGIGAKSQKAIISHARGTGSTLVEVLREGVVPGKAGASMVEF 446

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
           A  L DHI + ++ +               ++ W +        +           + + 
Sbjct: 447 ARFL-DHIGERLSRM--------------DLASWMEDL------LKESGLWDYYQGFDDY 485

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
             +       +++             +  +  +    ++         + ++    ++ L
Sbjct: 486 TARQKLENLQELLALARSYPGGRDGLLAFLEYVALEGSLDR--GSGDGVVLITMHNTKGL 543

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
            F  +I+ GL EGV+P   A                + E    +    +      +  ++
Sbjct: 544 EFSKVIITGLEEGVFPSWAAS---------------SPEDIEEERRLFYVALTRAKDGLF 588

Query: 700 -----TRSLRENNIPTIASRWLQRLLVL 722
                TR++R       ASR+L+ +   
Sbjct: 589 LSWAQTRNIRGRRSFQQASRFLREIPPE 616


>gi|229016490|ref|ZP_04173431.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1273]
 gi|229022699|ref|ZP_04179223.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1272]
 gi|228738511|gb|EEL88983.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1272]
 gi|228744757|gb|EEL94818.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1273]
          Length = 1166

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 92/916 (10%), Positives = 219/916 (23%), Gaps = 133/916 (14%)

Query: 150  KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
              +  + + + +     E       +            +K+ ++ +     +        
Sbjct: 243  DEVKKLQEELFSRR--PESFLR-DFQDMHPVLEKLVKLVKVFTERFQAIKRDKGMVDFTD 299

Query: 210  YQIALMRAEAEHLMKGTKGP-------------IIIAGSTGSIPATARLMSTVANHPNGA 256
             +   ++  +E    G   P             +++     +      ++  V       
Sbjct: 300  LEHFCLQILSEQSEDGEMKPSAVALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESE 359

Query: 257  -IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH-------PQYSLAKLLDFLDIKRE 308
              +    D       +               T              +     + L     
Sbjct: 360  GNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGSGGGMKIDLAKNFRSRHEVLAGTNF 419

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
              K++                               L       ++        E +  +
Sbjct: 420  IFKQIMGEEVGEIDYDADAELKLGASYPEGEDVAAELLCIQQTEEEVQDGEEGAEVEKAQ 479

Query: 369  EEAISIAIALRMSLDE---------------NKKKSALITADRNLARRVKLELTRFGINI 413
             EA  +A  ++  +D                  +   ++      A ++  EL   GI +
Sbjct: 480  LEARLMAQRIKAMVDSGYEVYDRKTDSMRQVQYRDFVILLRSMPWAPQIMEELKLQGIPV 539

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
                          +I+ ++   I      + +A +++ P+      E    RA      
Sbjct: 540  YADLATGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRA----HG 595

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL----- 528
                  +     +    L  ++    K        Q       ++    L+  +      
Sbjct: 596  KKGSFYEVMSSFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGY 655

Query: 529  -QCITPLVTYKTNKNSTCGNLSISDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGK 582
               +  L   K  + +       +   +          L+ +     R          G+
Sbjct: 656  YDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGE 715

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDI--------------------ITRLIDGETVKPKI 622
                +    I     ++   +    +                              + K 
Sbjct: 716  QEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKY 775

Query: 623  EKSSTLFILGTLESRL----LNFDTLILGGLNEGVWPKNTAKN------PFLSRVMQSDL 672
               S L I   ++  L    +    + L    E +    T K+       +L      + 
Sbjct: 776  TTLSQLAIKRKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHGEW 835

Query: 673  NLKTAEKYIGQAAHDFEM----ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
             L    +       D+       +    ++         +         ++ V+ G D  
Sbjct: 836  LLPDHIRAGASCYLDWIAPSLYRHRDSEMLLELGQGNIPVDIYEYDTSWKVEVVDGKDLL 895

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY----------SFSEIKQ- 777
                 + +         +        +R +           +          S +EIK+ 
Sbjct: 896  APEPVQEEKQELLEALREKKAVPLESERKEEVYDRLMWEYGHEDATSHRAKQSVTEIKRN 955

Query: 778  -----LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
                   ++ +    R  +K       KK     +RGT  H ++  +     +   P   
Sbjct: 956  YQSEEGSDNAFIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITI 1010

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
             ++++ I     KE L    +        K+   F     K   + + +   +P  M + 
Sbjct: 1011 EVLQEQIARMVNKELL--TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLS 1068

Query: 893  ------------SIGIHLTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL---- 932
                           I + G  D + + +   + + D+KT    G  P      K     
Sbjct: 1069 AEEAYQDWQGKKGESILVQGVIDCM-IEEENGITLIDFKTDTIEGKFPGGFDQAKPTLED 1127

Query: 933  -IDPQLSLEAAALKAG 947
                QLSL A AL+  
Sbjct: 1128 RYKVQLSLYAKALEKS 1143


>gi|326383701|ref|ZP_08205386.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197465|gb|EGD54654.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 834

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 75/742 (10%), Positives = 192/742 (25%), Gaps = 90/742 (12%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
            A+L   +        + P     +     T +A  E+R   I++ G ++  +  + +  
Sbjct: 50  TAVLTRRIAFLLAERDVTP---GQILAITFTNKAAAEMRERVIDLVGPRAAYM-WVSTFH 105

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                   A   L  N N   S               R  L  +++DL  +     P   
Sbjct: 106 STCVRILRAQSGLLGNRNSNFSIYD--------ADDSRRLLGMVVRDLDLDPKKFSPRGV 157

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                    +++  + ++  +    +  A             A  +      +  RL   
Sbjct: 158 GT------QISNFKNELKDPDDAAAEAEADGQTDLA------AGTIAQIYAEYQRRLAAA 205

Query: 203 NASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVANHP---- 253
           NA          +     H       +     ++I     +  A   L+  +        
Sbjct: 206 NAFDFDDLIGETVSLLQRHPNVAEYYRRRFRHVLIDEYQDTNHAQYVLVRELVGDETSQS 265

Query: 254 --NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
             + + +    D       +   T ++      +   +             L+      +
Sbjct: 266 GVDPSELCVVGDADQSIYAFRGATIRNIEEFERDYPNAETIL---------LEQNYRSTQ 316

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
            + + +N +  R+    +  L  D+ D                    +    AD++R+EA
Sbjct: 317 TILSAANAVISRNANRREKKLWTDSGDGDL-----------------IVGYVADSDRDEA 359

Query: 372 ISIAIALRMSLD--------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
             IA  +   +D              A+       +R ++    R GI   +  G     
Sbjct: 360 AFIAKEIEELVDYSIGGSASHTYADLAVFYRTNTGSRSLEEVFVRHGIPYKVVGGTKFYE 419

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL-----ELVALRG 478
                 + + L  +   +D +++  ++  P    G   +                  +  
Sbjct: 420 RKEVRDIVAYLRVVANPDDSVSLRRILNTPRRGIGDRAEACVAVHAENLGISFYQALVEA 479

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
            +N   +++ +++    +           +         E     V         +    
Sbjct: 480 TENRVPLLNTRAVKQITLFVDLIEGLRSDFLMAFGAVGGESVDDAVADATTEGADVGELV 539

Query: 539 TNKNSTCGNLSISDW------TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
                  G  +  +               + + +     +     +++    +   +   
Sbjct: 540 DAIVDRSGYRAELEASNDPQDAARMDNLNELIAVARDFSVEAAQRDDDDLDDADEATDDA 599

Query: 593 ETGSCIKANAIEWIDIIT-RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
           E     +         +    +  +  +   E    + ++    ++ L F  + + G  +
Sbjct: 600 EVVGDGEPEPGSLAAFLEKVALVADADQVPDEGEGVVTMMTLHTAKGLEFPVVFVTGWED 659

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
           G +P   A         +  L      +   +       A        +R+     +   
Sbjct: 660 GHFPHMRALGDPAELSEERRLAYVGITR--ARQKLYLTRAM-------SRASWGQPVSNP 710

Query: 712 ASRWLQRLLVLGGTDFFDNLKK 733
            SR+LQ +            K+
Sbjct: 711 ESRFLQEVPQHLIDWRRTEPKR 732


>gi|317121134|ref|YP_004101137.1| ATP-dependent DNA helicase PcrA [Thermaerobacter marianensis DSM
           12885]
 gi|315591114|gb|ADU50410.1| ATP-dependent DNA helicase PcrA [Thermaerobacter marianensis DSM
           12885]
          Length = 791

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 89/699 (12%), Positives = 186/699 (26%), Gaps = 108/699 (15%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             L     +     +    +     T +A +E+R    ++ G  +  +  I +       
Sbjct: 35  RVLTRRVAFLLEQGVAPHQILAITFTNKAAREMRERVEQLVGTGARDM-WIGTFHASCVR 93

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               D               R   +       R+ L D++K+         P +    I 
Sbjct: 94  ILRRDGYRI--------GYDRNFIILDEDDR-RSVLRDVLKERNLSETRYPPNAVGGMIS 144

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            AK           +    E+                   +      + ERL    A   
Sbjct: 145 AAK----------NQLLDPEEFA-------ARHRDFYRQQVAAVYAAYQERLQRNGAMDF 187

Query: 208 VGYQIALMRAEAEHLMKGTKG-----PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
               +  +R   E              I++     +  A  RL+  +A       V+   
Sbjct: 188 DDLLMQAVRLLEEAPDVLAYYQRRFVHILVDEYQDTNHAQYRLLRLLAAGHRNLFVV--G 245

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       W      +            +P   + +L                       
Sbjct: 246 DPDQSVYRWRGADITNILRFE-----EDYPDARVVRL---------------------EL 279

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                +            NT   E ++ ++    + V +  A +E +EA  +A  +    
Sbjct: 280 NYRSTASILGAAQAVIEHNTQRKEKQLRSVHGEGARVVVFGAADEHDEAWFVAREMERLH 339

Query: 383 DENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
            E      + A++      +R ++  L R GI   I  G+          + + L     
Sbjct: 340 GEEGYGYGEMAVLYRTHAQSRVLEETLLRRGIPYRIVGGLKFYERKEVKDILAYLRLAVN 399

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
            +D +++  ++  P    G        A    E V                 +LD +A  
Sbjct: 400 PDDRISLRRVINVPRRGIGEATLARLEAYLDREGVG----------------LLDALARA 443

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
           ++   V   Q                 ++     +   +           I+     T  
Sbjct: 444 EDIPGVTRPQ--------------AAALMAFGGVIADLRAMAEQRPAYDVIALALDRTGY 489

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                       +  L   +E  +++  F +    G          +D +  +     V 
Sbjct: 490 KEMLEQEQTPDAMSRLENLKELLSVARDFERQRGAGDA------PLVDFLAEVALVSDVD 543

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
              E +  + ++    ++ L FD + + G+ EGV+P + + +       +  L      +
Sbjct: 544 QLDEGARAVSLMTLHSAKGLEFDVVFITGMEEGVFPHSRSLDDPHELEEERRLCYVGMTR 603

Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
              +    F     TR      + R      + SR+L+ 
Sbjct: 604 ARRRLYMCF-----TRQRTLFGATRRQ----VPSRFLEE 633


>gi|229126550|ref|ZP_04255564.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-Cer4]
 gi|229143847|ref|ZP_04272266.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST24]
 gi|228639608|gb|EEK96019.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST24]
 gi|228656939|gb|EEL12763.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-Cer4]
          Length = 1166

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 97/893 (10%), Positives = 214/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KNDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLSDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 858

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             R       L + +IP     +     V    G         + +         +     
Sbjct: 859  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 918

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 919  LQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRAPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------IHLTGFAD 903
                  K+   F     K   + + +   +P  M + +              I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|312114573|ref|YP_004012169.1| UvrD/REP helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311219702|gb|ADP71070.1| UvrD/REP helicase [Rhodomicrobium vannielii ATCC 17100]
          Length = 793

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 79/689 (11%), Positives = 181/689 (26%), Gaps = 113/689 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E++    ++ G     +P + +   +                  +  
Sbjct: 83  EILAVTFTNKAAREMKERVGKLVGGAVEGMPWLGTFHSIG-----------------MRI 125

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +  +       +  W A+ LA +ID  + +   
Sbjct: 126 LRRHAELVGLSQNFTILDVDDQIRLIKQ--IIQAERLDDKRWPARQLAGLIDGWKNKGLV 183

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            E + A     +     +           + +RL +LNA       +  +R    +    
Sbjct: 184 PEKVPAGDAFSFANGRGI------ELYAAYQKRLKDLNAVDFGDLLLENIRLFQNNPDVL 237

Query: 226 TKGP-----IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
            +       I++     +  A    +  +A        +   D       W      +  
Sbjct: 238 KQYHRWFTYIMVDEYQDTNVAQYLWLRLLAQGSRNICCV--GDDDQSIYGWRGAEVDNIL 295

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +      P   + +L          +     +     GR     ++ +        
Sbjct: 296 RFEQDF-----PGAHVIRLEQNYRSTPHILGAASKLIANNAGRLGKTLRTGI-------- 342

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNL 398
                     +       +A+    ++ EEA   A  +     E       A++      
Sbjct: 343 ----------DGADMGEKLAVRGIWDDDEEARLAAEDIDRFRREGIALNDIAILVRASFQ 392

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            R  +      G+   +  G             + L  +      +    +V  P    G
Sbjct: 393 MRAFEDRFVTMGMPYRVIGGPRFYERQEIKDAIAYLEVLQNPAADLRFERIVNVPKRGLG 452

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                            +      +  +      Q   +EE K 
Sbjct: 453 EQAV---------------------------QTIFGHARAEGLSLFHAARQITETEELKP 485

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            A   +  +  C     +       T     I D +  T    +       +        
Sbjct: 486 AARRSLRALTDCFERWRSLMGAMPHTELAELILDESGYTEMWQK------DKSPQAQTRL 539

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E  K L     +     +        +++ ++ ++D +    +      + ++    ++ 
Sbjct: 540 ENLKELIRFMDQFDNLAA--------FLEHVSLVMDAD----QAADGDRVSLMTLHGAKG 587

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F  + L G  EG++P   A +         +   +  E+    A      A     + 
Sbjct: 588 LEFGVVFLPGWEEGLFPHQRALD---------ENGQEGLEEERRLAYVGITRAKRRLTIS 638

Query: 699 YTRSLRENNI--PTIASRWLQRLLVLGGT 725
           + ++ R +      + SR+L  L V    
Sbjct: 639 FAQNRRVHGSWQSALPSRFLDELAVEHAE 667


>gi|240950109|ref|ZP_04754404.1| DNA-dependent helicase II [Actinobacillus minor NM305]
 gi|240295410|gb|EER46179.1| DNA-dependent helicase II [Actinobacillus minor NM305]
          Length = 731

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 69/699 (9%), Positives = 174/699 (24%), Gaps = 123/699 (17%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK--SLGDVVEEKFTADLLLSYNLNPP 102
           +++     T +A  E+R        + S  +  +   +   +      +  L        
Sbjct: 55  SNILAVTFTNKAAAEMRQRIEATLEQSSHNMFGMWVGTFHSIANRLLRSHYLD------- 107

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                     A L   ++    +  + L         I   +     K +A  I+  + +
Sbjct: 108 ----------ANLPQDFQIMDTEDQQRLLKRLLKLHNIDEKHFPP--KQVAWYINSQKDQ 155

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA----- 217
            K+ +D+     E +          L    + + +              I          
Sbjct: 156 GKRPKDI-----EHFNDHNEKK---LVEIYQLYQDACDRAGLLDFAELLIRTYEMLKNKP 207

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I+I     +      L+  +A      +++   D       W     +
Sbjct: 208 LILQRYQQRFQHILIDEFQDTNNIQYDLIHLLAGQHGKVMIV--GDDDQSIYGWRGAQVE 265

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            + Q    +L                                   +  
Sbjct: 266 NIQRFLK-----DYEQAQTIRL---------------------EQNYRSTGHILASANEL 299

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITAD 395
              N + L  K+         V +  A NE +EA  +A  ++   ++     + A++   
Sbjct: 300 IANNDNRLGKKLWTESGDGDPVEIYCAFNELDEARFVAAQIQQWKEDEGSFSECAVLYRS 359

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            + +R ++  L +  I   I  G+            + L  I    D  A   ++  P  
Sbjct: 360 NSQSRVIEEALIQANIPYRIYGGMRFFERQEIKDALAYLRLISNRQDDAAFERVINTP-- 417

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                                            + +    + T +  T         + +
Sbjct: 418 --------------------------------PRGIGERTLETIRQLTRTRSITLWQAIQ 445

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                  L       +   V      +S    +S++D T   +            ++   
Sbjct: 446 VAIQEEQLSGRAASALLRFVELINALDSETEQMSLADQTDFVIR------KSGLYEMYKQ 499

Query: 576 WFEEEGKTLSSLFSKIIET-----GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
              ++G+       +++             +       +T                 + +
Sbjct: 500 EKGDKGEVRIDNLEELVTATKQFTPPDEAEDLTPLTAFLTHASLEAGEAQASPHQDYVEL 559

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKN--PFLSRVMQSDLNLKTAEKYIGQAAHDF 688
           +    ++ L F  + + G+ EG++P   + +          + + +  A+K +  +  + 
Sbjct: 560 MTLHSAKGLEFPRVFIVGVEEGIFPSGMSHDEGRLQEERRLAYVGITRAKKKLTISHAEL 619

Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
               G                   SR++  L      + 
Sbjct: 620 RRLYGKEERHI------------PSRFIAELPEEHIREI 646


>gi|300741871|ref|ZP_07071892.1| UvrD/REP helicase [Rothia dentocariosa M567]
 gi|300381056|gb|EFJ77618.1| UvrD/REP helicase [Rothia dentocariosa M567]
          Length = 1444

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 87/775 (11%), Positives = 183/775 (23%), Gaps = 87/775 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEIT---------------GKKSTILPIIKSLGDVVEEKFT 90
            V     T++A  ELR                          +  P + +          
Sbjct: 92  EVLGVTFTRKAAGELRDRMRTRLNILRERNLIELSEEELLAGSSEPTVSTYHSYANNLVK 151

Query: 91  ADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
              L          + + Q     A+++  W   LP         S  ++          
Sbjct: 152 EYGLRLGVEQDAQMLGDAQAWQLAAQIVQYWDGDLPAASSASGVASKSTIV--------- 202

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL-----------------LAADFLKIA 191
            ++L  +           + +    +     +                    A   L   
Sbjct: 203 -QSLLQLSGECAEHLVSPQQVIEFCSAHLAAYESLSSPGPSANAKKVIERLKAKIILAKL 261

Query: 192 SKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLM 246
            + +      +             R       A  L +     +++     +  A  RL 
Sbjct: 262 VQRYARVKARMQVLDYGDLIALAARIAREVPTAAQLERERYKVVLLDEFQDTSHAQLRLF 321

Query: 247 STVANHPNGA---------IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH-PQYSL 296
           + +    +G           V+   D       +   ++                P Y  
Sbjct: 322 ADLYGARDGHDGHPGQPEHPVMAVGDPKQSIYGFRGASDGQLFSFYQYFPTRDETPLYLT 381

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
               + + I          + N              P        + IL    P  +   
Sbjct: 382 VAWRNDVAILDAANLIAAKLKNIPDWVRAPA----PPHVPDLRPRSVILNPDEPGYRAML 437

Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKK------KSALITADRNLARRVKLELTRFG 410
             V L    +E EEA  IA  +                 A++T  R     ++      G
Sbjct: 438 GSVQLARYGSETEEAQGIAERIVQERARYADTPAQMPTMAVLTRTRAQMEPIRQACESLG 497

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
           + + +     L        + S+L  +   N   A+  L+    A++      L    + 
Sbjct: 498 VPVQVVGLGGLLERPEIIDMVSMLRVLADPNRSDALMRLLAG--ARWRLGTADLLALGDW 555

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV-----LLVD 525
              +     KN       +S          +         R + E+ E A       L +
Sbjct: 556 SNYLTTTREKNMGRTFGEQSSEETSGDVPSSPQTDTDASLRAAHEEFERARKNAVEDLAE 615

Query: 526 H--ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD-EHRKLPNLWFEEEGK 582
           +  +++ I  L T     N            +L+V  L+ +       +    +  E+  
Sbjct: 616 YGSLIEAIEHLPTADEAGNPIYPADYPESRRRLSVEGLRRLHAFTAEVEYLRQFTTEDIG 675

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDG--ETVKPKIEKSSTLFILGTLESRLLN 640
           TL     +++     + A            +D   E        S  +  +    +    
Sbjct: 676 TLLYEIERVMLLDIELAARPGGDAYGSRAHLDAFHEVAASYAASSPRINAMLYAGADGTE 735

Query: 641 FDTLILGG----LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR- 695
            D          L+            +L +    +  L  AE+   + A      + ++ 
Sbjct: 736 VDEDAPTARRFVLSANGISYLLGFLSWLEQAQNHERGLTPAEEEPRRDAVQILTMHASKG 795

Query: 696 -HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
               +    R  +          RL            +      L+   ++    
Sbjct: 796 LEWDHVYLPRMCDKYPTRPHTWHRLEYGSLPWPLRGDRDYLPSALERAEEVSALE 850



 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 109/409 (26%), Gaps = 58/409 (14%)

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
               ++      +E          ++ +           +       +      P+     
Sbjct: 1042 GGVQEPDLPDPQESKGAYDENLEQLKKHYGLDTVENFRYAREPLAQLAQGKQGPEQPGVR 1101

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
               +   LE      D    G +    WP +      + R        +  E     A  
Sbjct: 1102 PQIVHRFLEPAAWVKDNPQQGSVLTADWPFDPFDGAQVIRWASEKDLAERTENRDIIAVP 1161

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                A         R  R        S  L  L  L      +  +   Q +      L 
Sbjct: 1162 GQRRA---------RVERAALNVARGSLSLDDLDKLTSPTDEEAQQI--QDWEHEVDLL- 1209

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                     +    P + A+P   S S +  L  D       R+++   +          
Sbjct: 1210 -----LALAQRAVTPAVPAKPEHMSASTLIALSEDKET-VLSRLVRPVPMQPSA----AA 1259

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
             +G LFH  + E                M  I D  +  ++L    D        K+  +
Sbjct: 1260 RQGILFHAWVEEYFGDEP----------MLDIQDELYSDDDLDGSFD------LDKLRAT 1303

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL------KSGF------VD 914
            FLE E   ++         P +  +   G+++ G  D +           G        D
Sbjct: 1304 FLESEWASRTIWR---AEYPVETHVA--GVNIRGRIDAVFRRTEQITNADGTLQEQEHWD 1358

Query: 915  ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
            + D+KTG  P    A +    QL+L   A        ID  +V   FY 
Sbjct: 1359 LVDWKTGRKPS-AHAMRHKRIQLALYRLAFAK--IQGIDPERVHAAFYY 1404


>gi|169824300|ref|YP_001691911.1| putative ATP-dependent exonuclease [Finegoldia magna ATCC 29328]
 gi|167831105|dbj|BAG08021.1| putative ATP-dependent exonuclease [Finegoldia magna ATCC 29328]
          Length = 893

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 89/278 (32%), Gaps = 44/278 (15%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------K 821
              S ++++     P   Y R  LKL      +      D GT+ HN + E         K
Sbjct: 630  ELSSTKLETYFECPMKFYFRYYLKLRPQIKSRL----LDIGTILHNTLEEFYGINISQIK 685

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSS-- 877
              I+         +  ++ + FEK  L   I         +      F+  +     +  
Sbjct: 686  DAIDGKCELDISSLDGLLKNSFEKFGLNTDIKENEFDYEKYLNKLKDFVRTDIYNMKNEP 745

Query: 878  --IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLI 933
                   +     ++++      TG  DR+D   SG + + DYK   N   K +   K  
Sbjct: 746  EKFYPFKLEEDFIISLDEST-KFTGRIDRVDKTDSGKIRLIDYKLSKNSFRKAKDLDKNK 804

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE---KS 990
              Q ++ +               V +  Y  +K   + + + N  K    + + +   + 
Sbjct: 805  GFQFAIYS-----------SYGDVVSCKYKSIKDNDEYEFLQNISKDQLDEIMIQKVNEF 853

Query: 991  LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
             +N+      ++  +          + S    +Y+ + 
Sbjct: 854  RENIRNKRLFIKASD----------DNSCKYCDYNKIC 881


>gi|309813116|ref|ZP_07706840.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
 gi|308432920|gb|EFP56828.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
          Length = 281

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 20/187 (10%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-KRINKN 827
           + S S     +  P     R I KL              RGTL H+++  +       + 
Sbjct: 4   SLSPSRASDFMQCPLLYRFRVIDKLPES-----PSAAASRGTLVHSVLERIFDVDAPKRT 58

Query: 828 TPEINHLMKQIIDSHFEKENLPPHID-------IIWRHLFHKISHSFLEHEEKIQSSIEK 880
                 L+    +     E     +          W     K+   +   E      +E 
Sbjct: 59  LERALDLVPHAWEDMLTDEPELAELAGSTPHDLATWLRDAEKLVEKWFAMEN--PQFLEP 116

Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-QLSL 939
               +  +  ++  G+ L G+ DR+D+   G + + DYKTG  P      +     Q+  
Sbjct: 117 AERELYVEADLD--GLTLRGYIDRLDVAPGGQIRVVDYKTGRAPS--ELFENKALFQMKF 172

Query: 940 EAAALKA 946
            A  +  
Sbjct: 173 YALVIWR 179


>gi|319440412|ref|ZP_07989568.1| RecB family exonuclease [Corynebacterium variabile DSM 44702]
          Length = 278

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 73/225 (32%), Gaps = 20/225 (8%)

Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
             P + +P   S S +      P     R I +L              +GTL H ++ EL
Sbjct: 8   PAPAKRRPLALSPSRVGDYNQCPLLYRFRAIDRLPEPSTV-----AQVKGTLVHAVLEEL 62

Query: 820 IKKRINKNT-------PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
                 + T        + +       D    +                 +   FL    
Sbjct: 63  HGLPREERTYPTAVKMLKPHWAAMTAKDPQLNELVPESDFMDFLIASRDLVKGYFL---M 119

Query: 873 KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
           +   + +   +     + +   G+ + GF DR+D+  +G V + DYKTG  P    A + 
Sbjct: 120 ENPEAFDADSMEKFVDLTLP-NGVPVRGFIDRVDVAPTGEVRVVDYKTGKKPIPRFAGQA 178

Query: 933 IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
           +  Q+   A       +  I  +    L Y++++    +     +
Sbjct: 179 M-FQMRFYALVWWR-LYDHIPEQ--LRLMYLKVRDDMVLSPTPAE 219


>gi|90413495|ref|ZP_01221486.1| putative exodeoxyribonuclease V [Photobacterium profundum 3TCK]
 gi|90325427|gb|EAS41910.1| putative exodeoxyribonuclease V [Photobacterium profundum 3TCK]
          Length = 1154

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 106/882 (12%), Positives = 218/882 (24%), Gaps = 128/882 (14%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ +LL   +  N   +P  P       I V +    Q L+ E     G  + +     
Sbjct: 11  DLLKSLLVELIRLNPLDNPFEPE-----QILVQSPGMSQWLKMELATSFGIAANLE---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      K    +L      P  S   +     +L+ +   +L     +       + P
Sbjct: 63  PLPATYIWKMFTQVLADV---PERSAFNKEAMTWKLMEVLPKQLGLPEFEPLKRYLDNDP 119

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKYGMWWLLAADFLKIAS 192
            S      LA+ +ADI D       +W       E +  L +E     W        +  
Sbjct: 120 ESL-KIYQLAEKIADIFDQYLVYRPEWIQQWEAGEVVAELGDEH---PWQPILWQ-ALYD 174

Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--IIIAGSTGSIPATARLMSTVA 250
           +         + ++   + I  +   A         P  + + G +   P     ++ + 
Sbjct: 175 QTLALGQSPYHRANLYEHFIDTLDNYASSGTLPANLPPRLFVFGISSLPPRYLDALAALG 234

Query: 251 NHPNGAIVLPGLDCHIPTAIWNT-------------ITEKSTNITSSNTTYST------- 290
            H +  ++      +    I +              I + + +   +             
Sbjct: 235 EHIDVHLMFTNPCRYYWGDIRDRKHLARLAANQRVTIKQLNVSSDDTLHGDENVAVLKDT 294

Query: 291 ---------HPQYSLAKLLDFLDIKREDVKRL-----------GNVSNEMYGRSMVISKS 330
                    H       LL  +     D   L           G V  E       I   
Sbjct: 295 DGNHYDDDMHNDVVGNSLLASMGKLGRDNMYLLSEMQVNEVDAGFVDIEPDSLLHAIQAD 354

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------ 384
            L  +           +    I      +++    +   E   +   L    +       
Sbjct: 355 ILNLEDRQNDQILDSSDHKFPISDGDMSLSIHACHSPMREVEVLHDNLLAMFEAETAKGL 414

Query: 385 NKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
             +   ++ AD N        +         I   IS                LL     
Sbjct: 415 KPRDVIVMVADINAYSAAIQSVFGNAPGNRYIPFSISDRTAEQENPILLAFVRLLTLPES 474

Query: 440 LNDFMAIATLVKHPLAKFG--FPEKYLSRAKNALELVALRGNKNSYDIMDLK-------S 490
             +   +  L++ P       F      + K  +E   +R   +       +       +
Sbjct: 475 RCNASELLELLEVPAVMNKFGFDSNSFEKIKRWIEEAGVRWGLDEKTACQFELPEQNQNT 534

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLS 549
            +                         E    L   +   +     +  + +        
Sbjct: 535 WLFGIQRMLLGYAMPHDAGLFDGISAYEQVQGLDAELAGQLAGFIDSLISYREQLAQPQC 594

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
           +S WT L    L +    E      L  +     L  L  ++ + G     +       +
Sbjct: 595 VSSWTDLLNQLLDDFLAVELDGELVL--KSIRDNLHRLHEQLADAGYQSLISPAVLTQYL 652

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
              + GE V  +      +     +  R + F  + L G+N+G +P+N A   F     +
Sbjct: 653 QDKLSGERVSQRFLAG-QVNFCTLMPMRSIPFKVVCLLGMNDGAYPRNIAPEGFDLMNGR 711

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRL-------- 719
           +    ++          +   +     L  +   R   +N   + S  +  L        
Sbjct: 712 TKAGDRSRRDDDRYLFLEAIQSAQ-ETLYISYVGRSIQDNAEKVPSVLVSELVEYCQQGY 770

Query: 720 --------------LVLGGTDFFDNLK--------------KRGQCYLDWTRKLDYTTKQ 751
                           L       +                     +L    +     K 
Sbjct: 771 CMEGDEVLPVDQSAKRLKEELLVHHHPLVPFSPTAFIGEKSSFAAEWLPAAARHGEANKA 830

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                    P +  Q      +E+++    P   +  R LK+
Sbjct: 831 FQLTALDAEPMVSEQELVLELAELQRFWRLPVRYFFNRRLKV 872


>gi|315187403|gb|EFU21159.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
          Length = 1149

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 74/815 (9%), Positives = 190/815 (23%), Gaps = 98/815 (12%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPAT 242
            L    +       E N  +       ++             KG    I++     +    
Sbjct: 333  LAEWHREVERFKKERNLLTFGDVMHLVLTLLKEEKGVREFYKGRFDAILVDEFQDNNGLQ 392

Query: 243  ARLMSTVANHPNGAI-------------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
              L+  +A                    +    D      ++                 S
Sbjct: 393  RDLLYLLAERKGRCADGVPSFEDLEPGKLFVVGDEKQSIYLFRGADVGVFLDLKERANKS 452

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM----RNTDIL 345
            +H    + +L      +   ++ +  ++           +        +        +  
Sbjct: 453  SH--GEVIRLPHNYRSEPGLLEAVNRMAGAFPEEMRGGIEFLPAEAGREGAGFTPRIEAG 510

Query: 346  ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--------------NKKKSAL 391
                   +       L++A     EA  +A  +R  ++E                   A+
Sbjct: 511  VYVKGEEEARAEGRDLVDAGT--AEAWWVAGRIRRWVEEGALMVRDGEGVRPVRYGDVAV 568

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +          +      GI    S    L     ++ L S L      +D ++ A +++
Sbjct: 569  LMRTGTNQLAFERAFRAHGIPYTASYSRNLFLEGPANDLFSWLFIAVYPHDLLSYAAVLR 628

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             PL      +  + R     E       + +  ++  ++   +R            +   
Sbjct: 629  GPLVG--LSDAGILRLIEREEGCFSLPPEEARGVLGDEAERYERAREI--------YHWL 678

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
             S  D+ +   L+ ++       +     ++         +         +         
Sbjct: 679  ASHRDRVVHERLLRYLWVDCGYRMVLLGQEHLHPFLRFYDELVAFVRRWEERPLARC--- 735

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                  +E  + L       +E G    A  I  I     L     V       S     
Sbjct: 736  -----LDEVKEQLGRYGRVDVEEGGGGDAVRIMTIHAAKGLEFPVVVLASCGAESRREGE 790

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
            G +   ++    +     ++G   +        + + +         +        +   
Sbjct: 791  GKMPYFMVEGAPVFGFEGDDGGKKE--------NPLYRRAAEEVKRREGEEMLRLLYVAL 842

Query: 692  NGTRHLIYTRSLREN--------NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                  +                     + + +   + L      +  + R +   +   
Sbjct: 843  TRAECHLLVTGEWRGAVGKKKGNGSEDGSKKTVLSFMSLLFEMTEEEPEVRFRADREGIE 902

Query: 744  KLD--YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND---------PYAVYARRILK 792
             ++     + P          + +  R   + E  +   +         P AV    +  
Sbjct: 903  GVEWRDPERIPGITEEDLRKRIGSGSRGGRWEEAARWYEEVDEGVGRVRPGAVSVSVLAG 962

Query: 793  LDFIPHFKKDPD-RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
                    +        G+L H  +    +     +   +   ++    +          
Sbjct: 963  EWEAERRGEATGKGAVFGSLVHRGMVLWAR---LGDEGRVREALRGEALAWGGDGEWGEV 1019

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
                       +   +   E   +         +      E  G  + G  D +  +  G
Sbjct: 1020 DRACEEA--TALVRRWAGSEVGREVLGNGAGWEVECAAEWE--GWVVHGVMDAV-WVGDG 1074

Query: 912  FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             V I ++KT + P     ++    QL L       
Sbjct: 1075 VVRIYEWKTEEEP---DVERYRA-QLFLYGLIASR 1105


>gi|315641090|ref|ZP_07896169.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952]
 gi|315483098|gb|EFU73615.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952]
          Length = 754

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 80/748 (10%), Positives = 192/748 (25%), Gaps = 114/748 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLL-LSYNLNPP 102
           ++     T +A +E+R     + G +S       I +   +       ++  + YN N  
Sbjct: 58  NILAITFTNKAAREMRERIHALVGPESEDIW---ISTFHSMCVRILRREVEKIGYNRNFT 114

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           + +    L L + +L   N  P         + +S   +          LA+    ++  
Sbjct: 115 ILDSSDQLSLMKRMLKELNIDPKKYDPRGILASISNAKNKLQTPANVSKLANSFIELQVA 174

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                                         + + + LV+          +  +    +H 
Sbjct: 175 RC---------------------------YEAYQKELVKNQCMDFDDLIMNTIELFKKHP 207

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +  A   L+  +A+      V+   D       W     +
Sbjct: 208 DVLAFYQNKFHYIHVDEYQDTNHAQYTLVRMLADRFENLCVV--GDADQSIYGWRGADMQ 265

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P   +  L                                   +  
Sbjct: 266 NILDFED-----DYPAAKVILL---------------------EQNYRSTKTILTAANQV 299

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITA 394
             +N       +    +    +      NE +E   +   +   +   +    + A++  
Sbjct: 300 IKQNKQRKAKNLWTDNEPGEKIVYFRGGNEHDEGRFVVSEIVKRVRSKEHIYGEFAVLYR 359

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R V+  L +  I   +  G    +      + + LN +   +D +++  ++  P 
Sbjct: 360 TNAQSRVVEESLMKANIPYKLVGGQKFYSRKEIRDVLAYLNVLANPSDSISLERIINTPK 419

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G                                      A +   +     Q+    
Sbjct: 420 RGIGPGTVEKL----------------------------KGFADENGWSLFEGAQNVNVS 451

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                A   ++     +T L       + T     +   T           ++   ++ N
Sbjct: 452 TISGKANRELEQFGLLLTDLQQMIPFLSLTELTEEVLKRTGYLNELKNQKTIESEARIEN 511

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAI-EWIDIITRLIDGETVKPKIEKSSTLFILGT 633
           +  +E          +        +A+   +  + +  L     V    E SS + ++  
Sbjct: 512 I--QEFLSVTQEFDRRYASQAEDSEADPTEKLAEFLNELALLADVDSFEEDSSQVTLMTL 569

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + L G+ E ++P + A         +  L      +   Q      M   
Sbjct: 570 HAAKGLEFPIVFLVGMEENLFPLSRALLEDKELEEERRLAYVGITRAEKQLFLTNAM--- 626

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
                 TR+L   +     SR+L+ +      D   + +        + ++         
Sbjct: 627 ------TRNLYGRSQYNHPSRFLEEI-----DDTLLHYESNQPATNSFAKRQVRPVITQT 675

Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLIND 781
             RP       +     S ++       
Sbjct: 676 QARPVASYKQPSTQGVTSATQSGAESVC 703


>gi|115378638|ref|ZP_01465789.1| hypothetical protein STIAU_4711 [Stigmatella aurantiaca DW4/3-1]
 gi|115364350|gb|EAU63434.1| hypothetical protein STIAU_4711 [Stigmatella aurantiaca DW4/3-1]
          Length = 760

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 78/668 (11%), Positives = 162/668 (24%), Gaps = 120/668 (17%)

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA- 455
             AR +   L   G+ + + +G PL+      +   L            +A LV    A 
Sbjct: 2   PEARWLAEALGELGVPVRLPSGEPLALAGPVRLALDLPLLAEDGFPAERVAELVASRYAP 61

Query: 456 ----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
                       L       +             + L+ L    +A +    +       
Sbjct: 62  TLSRGAPEAPATLLTLAAVRDDRLGASRGRGAYDVRLEGLARRMVAARDEKANAVRLLRE 121

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                 E    + +     +  L  +           S  +   L    L  + L    +
Sbjct: 122 RCLRLMEECRRIPET-GSALELLGAWWQAVRQLGLMDSEGELEPLRDGALGLLGLKARAR 180

Query: 572 LPNLWFEEEGKTL-----------------SSLFSKIIETGSCIKANAIEWIDIITRLID 614
                     +                    +    +++    +             ++D
Sbjct: 181 DDAARQALGLRVAELERGLRRVEGGPRLSRRTFGRWLVDAMRDVSLPPGGPSSGAVEVLD 240

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              +  +      L  +             +LG  +     K+  ++ F  R+   +   
Sbjct: 241 IRELAGRTFGHLFLAGMTEGRFPGHEAPNPLLGDADRVELNKHLERDVF--RLTGGEFEE 298

Query: 675 KTAEKYIGQAAHDFEMANGTRH-LIYTRS-LRENNIPTIASRWL---------------- 716
           +   +          +       +  + +         + S +L                
Sbjct: 299 RAPWRLTEDRLLFASVLVAAEEQVSLSFAVAGVGGQEQVPSAFLEEVRRLTGRNWEARAL 358

Query: 717 ----------------------------QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                                        R+      +        G+ +    R+L   
Sbjct: 359 MAVPPLDDVLTEPELRQRVALETMASARLRVTEPDMAEPLLRRHFAGEAWYAEARELARV 418

Query: 749 TKQ---------------------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
             +                     P             + R  S S + +  N  +  + 
Sbjct: 419 ELERLHFFSDPAHRVGPHTGHVVGPGLPEALRETFRFDETRPLSASALARFGNCGFQGFL 478

Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN---------TPEINHLMKQI 838
              LK+       ++ D   RGT +H ++ E+ ++   K            E+       
Sbjct: 479 TYGLKVAEPEQPGEEFDARGRGTFWHRVVEEVFRRLREKGLLGKGLEEIPEEVLTAAVAE 538

Query: 839 IDSHFEK--ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE--KIFVNIPA------- 887
               FE+      P +  + +     ++   L  E +             +         
Sbjct: 539 AVRSFEQRHHVGHPELWKLAKERARAMARRILADERRGLPFERYMPEDFELKFGPEALRD 598

Query: 888 -----KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI--DPQLSLE 940
                 +A     IH  G  DR+D    G V + DYK+G   K+E  +KL+  D QL L 
Sbjct: 599 TWKQVSLAAGQEAIHFEGKIDRLDQRA-GDVGVIDYKSGRLDKRELKEKLLSSDFQLPLY 657

Query: 941 AAALKAGS 948
             A +A  
Sbjct: 658 LYAARASG 665


>gi|297564148|ref|YP_003683121.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848597|gb|ADH70615.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 781

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/721 (9%), Positives = 188/721 (26%), Gaps = 112/721 (15%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +        + P     +     T +A  E+R     + G ++       +    
Sbjct: 39  VLTHRIAHLMAARGVRP---GEILAITFTNKAAAEMRERIQALLGVRAANSMWTMTFHSA 95

Query: 85  VEEKFTADLLLSYNLNP-PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                  +       +   + +      L +L+    +  P         + +S      
Sbjct: 96  CVRILRREAARLGYPSSFTIYDSADSARLMQLVCKEMDLDPKRFPPKSFSAQVSN----- 150

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                          ++ E   ++        +           L  A + +  RL E  
Sbjct: 151 ---------------LKNELVDYDTFAGQAQTEQ-------EKKLAEAYQLYQRRLHEAG 188

Query: 204 ASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG--- 255
           A       +  +             +     +++     +  A    +  +     G   
Sbjct: 189 AMDFDDLIMVTVNLFQMFPDVAEYYRRRFRHVMVDEYQDTNHAQYVFIRELVGVAEGSDT 248

Query: 256 -----AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                A +    D       +   T ++      +   +             L+      
Sbjct: 249 SVVPPAELCVVGDADQSIYAFRGATIRNILEFERDFPDARTIL---------LEQNYRST 299

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
           + + + +N +  R+       L  +  D                    +    ADNE +E
Sbjct: 300 QTILSAANAVIDRNEGRPAKNLWSEQGDG-----------------PAIVGYVADNEHDE 342

Query: 371 AISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
           A  +   +    D+      + A+       +R  +    R G+   I  G+        
Sbjct: 343 AAFVVGEIDKLTDDGTLTPSQVAVFYRTNAQSRVFEDVFIRTGLPYKIVGGVRFYERKEI 402

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL-RGNKNSYDIM 486
             + + L  +    D +++  ++  P    G   +       A E ++  R  +   +I 
Sbjct: 403 RDVLAYLRVLANPEDTVSLRRILNVPKRGIGARAEESIELFAARERISFSRALRRVEEIP 462

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT--NKNST 544
            + +  +  +                    +     +V+ +L     L       +    
Sbjct: 463 GMAARSVKAVLNFTALLEELE-----QTVPEGTPAEIVEAVLSKTGYLSELAESKDLQDE 517

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               ++ ++  +              +      E  G                     ++
Sbjct: 518 SRVENLEEFVDVAREFEHTFAALLEEEPTEDGEEAAG------------AVDPGAPTLVD 565

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
           +++ I+ + D + +  + ++   + ++    ++ L F  + L G+ +GV+P         
Sbjct: 566 FLERISLVADTDQIPDEDDEGGVVTLMTLHAAKGLEFPAVFLTGMEDGVFPHTRT----- 620

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY-----TRSLRENNIPTIASRWLQRL 719
                    L    +   +    +      + L+Y      RS         ASR+L  +
Sbjct: 621 ---------LGDKTQLEEERRLAYVGLTRAQRLLYVSRAAVRSAWGTPSYNPASRFLDEI 671

Query: 720 L 720
            
Sbjct: 672 P 672


>gi|167752257|ref|ZP_02424384.1| hypothetical protein ALIPUT_00500 [Alistipes putredinis DSM 17216]
 gi|167660498|gb|EDS04628.1| hypothetical protein ALIPUT_00500 [Alistipes putredinis DSM 17216]
          Length = 813

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 78/778 (10%), Positives = 197/778 (25%), Gaps = 109/778 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             L     Y     +   ++     T +A +++R    ++          + +   V   
Sbjct: 36  RVLTSRIAYMIEQGVAPYNILALTFTNKAAEQMRERIAQMLPDGRHRYIRMGTFHSVFSR 95

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +               +   +       +N L  I+K+L  +     P   A+ I 
Sbjct: 96  ILRDNAERI--------GFPQSFTIYEPSDC-KNLLKTIVKELNLDDTKYKPAMLASRIS 146

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            AKN                  +            +           +  R     A   
Sbjct: 147 YAKN-----------CLVTPGAYLANAGAAAEDRRMQIPEFGNIYNIYCARCKRNGAMDF 195

Query: 208 VGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
               +       +        +     I++     +  A   ++  ++   +   V+   
Sbjct: 196 DDLLLQTNILLRDCPDVTARYQEQFKYILVDEYQDTNYAQYVIIRRLSQLHSKVCVV--G 253

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       +     ++      +             ++  L+      + +   +N +  
Sbjct: 254 DDAQSIYSFRGAKIENILSFKKDFP---------NAMIFKLEQNYRSTRTIVEAANSVIE 304

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
           R+                 +  +E K  +       + ++ A  +REEA  +   LR  +
Sbjct: 305 RN-----------------SKRMEKKCFSEGDMGEKIRVLRAYTDREEAEMVVSDLRDKV 347

Query: 383 DENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                +    A++    N ++ ++  L R GI   I  G           L + +  +  
Sbjct: 348 RAAGDEWAEAAILYRTNNQSQALEDALRRKGIPYRIYKGNSFYDHKEIKDLLAYIRLVIN 407

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
             D  A   +V +P    G                              ++L +      
Sbjct: 408 PRDDEAFKRIVNYPARGIGDTTVERIALLAKA-----------------RNLSMWEAVDA 450

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT--PLVTYKTNKNSTCGNLSISDWTKLT 557
                V     +         V LV  +        L        +  G +         
Sbjct: 451 LTAEPVTDPVQKTIVRKVAEFVALVRGLSLARAEKGLYDLGLEIATRSGIIGAYRAENTP 510

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                   ++E      L+ E+    + +   +  E  +  +        +   ++  + 
Sbjct: 511 EATSALDNIEELLNSMQLFNEQREAEIRAGERQQEERATIEE-------WLQGVMLMTDM 563

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            K   +  + + ++    ++ L +  + + GL E ++P   A              +++ 
Sbjct: 564 DKDDPQDRNKVTLMTVHSAKGLEYKFVYIVGLEENLFPSQRA--------------VESP 609

Query: 678 EKYIGQAAHDFEMANGTRHL-IYTRSLRENNIPTIA------------SRWLQRLLVLGG 724
           + +  +    +      + L   + +        +             SR+L+   +   
Sbjct: 610 DGFEEERRLFYVALTRAKELATLSYAEMRFKWGNMEFSRPSCFLREIDSRYLETDAMQEE 669

Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
            +       RG+              +   K         A+    S + +K     P
Sbjct: 670 REPVRRSAGRGEGSSALDELRRRFDYRYQQKPAAGGSQAGARFGGGSSAGVKSEAQRP 727


>gi|52144188|ref|YP_082640.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L]
 gi|81689028|sp|Q63EM2|ADDA_BACCZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|51977657|gb|AAU19207.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L]
          Length = 1241

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 92/899 (10%), Positives = 211/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ +  +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTGRFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWI 927

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 928  APSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      +   K       +       + S   +                ++ +    R 
Sbjct: 988  EKKAVPLESERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIRTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPVTVEVLQEQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPILEVRYKVQLSLYAKALEKS 1218


>gi|228990221|ref|ZP_04150190.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus pseudomycoides DSM
            12442]
 gi|228769504|gb|EEM18098.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus pseudomycoides DSM
            12442]
          Length = 1182

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 97/878 (11%), Positives = 224/878 (25%), Gaps = 131/878 (14%)

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHL-------------MKGTKGPIIIAGS 235
            K+ ++ +     +         +   ++  +E                +     +++   
Sbjct: 295  KVFTERFQTIKRDKGMVDFTDLEHFCLQILSERANDGGLRSSPVALQYRNKFAEVLVDEY 354

Query: 236  TGSIPATARLMSTVA-NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST---- 290
              +      ++  V  +      +    D       +               T       
Sbjct: 355  QDTNFVQESIIKFVTKDFEQKGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTPEGIDGG 414

Query: 291  ---HPQYSLAKLLDFLDIKREDVKRLGNVS----NEMYGRSMVISKSFLPPDTSDMRNTD 343
                   +     + L       K++   +    +      + +  S+   +        
Sbjct: 415  MKIDLAKNFRSRHEVLAGTNFIFKQIMGETVGEIDYDADAELKLGASYPEGEDVAAELLC 474

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---------------NKKK 388
            I +++     +    V + +A   + EA  +A  ++  +D                  + 
Sbjct: 475  IHQSEGEESVEGEDGVEVEKA---QLEARLMAQRIKAMVDSGYEVYDRKTDSMRPVKYRD 531

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
              ++      A ++  EL   GI +              +++ ++   I      + +A 
Sbjct: 532  FVILLRSMPWAPQIMEELKLQGIPVYAELATGYFEATEVTVMMNVFRVIDNPMQDIPLAA 591

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            +++ P+      E  + RA +  +       ++      L+         Q     +  W
Sbjct: 592  VLRSPIVGLNDEELAMLRA-HEKKGSFYEVMRSFLQGAPLEEEAELHGKLQWFYNLLQGW 650

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL--------TVTC 560
            +    ++     +  V         +      K        + D  +             
Sbjct: 651  REFARQQSLSDLIWKVYRETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGLFRF 710

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI------------ 608
            L+ +     R          G+    +    I     ++   +    +            
Sbjct: 711  LRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKR 770

Query: 609  --------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNFDTLILGGLNEGVWPK 656
                              + K    S L I   ++  L    +    + L    E +   
Sbjct: 771  FLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRVLYVALTRAKEKLILI 830

Query: 657  NTAKNP------FLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANGTRHLIYTRSLRENNI 708
             T K+       +L     +D  L    +       D+                L + NI
Sbjct: 831  GTVKDKEKEIEKWLDSREHTDWLLPDYVRAGASCYLDWIAPSLYRHHDSEMLLELGQGNI 890

Query: 709  PTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY-TTKQPHYKRPKPFPPL 763
            P         W   ++  G     + +++  Q  L+  R+      +    +        
Sbjct: 891  PNEIYEYNASWKVEVVDGGTLLAPEPVQEEKQELLEALREKKPVPLESERKEEVYARLTW 950

Query: 764  EAQPRTYSFSEIKQLINDPYAVY-------------ARRILKLDFIPHFKKDPDRTDRGT 810
            E      +    KQ + +    Y              R  +K       KK     +RGT
Sbjct: 951  EYAYEGATAHRAKQSVTEIKRNYQSEDGSDNAFIKKLRTPIKTRPRFMEKKGLTYAERGT 1010

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
              H ++  +     N   P     +++ I     KE L    +        +I   F   
Sbjct: 1011 AVHAVMQHV-----NLQQPITLETVQEQIAEMVNKELL--TFEQAEEIAIDRIVAFFDTD 1063

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIG------------IHLTGFADRIDLLKSGFVDITDY 918
              K   + + +   +P  M + +              + + G  D +   + G V + D+
Sbjct: 1064 LGKRVLAAKSVEREVPFTMMLSAEEAYQDWQNQSRESVLVQGVIDCMIEEEDG-VVLIDF 1122

Query: 919  KT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            KT    G         K         QLSL A AL+  
Sbjct: 1123 KTDTIEGKFSGGFDQAKPILAERYKVQLSLYAKALEKS 1160


>gi|298290318|ref|YP_003692257.1| double-strand break repair helicase AddA [Starkeya novella DSM 506]
 gi|296926829|gb|ADH87638.1| double-strand break repair helicase AddA [Starkeya novella DSM 506]
          Length = 1144

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 90/870 (10%), Positives = 209/870 (24%), Gaps = 68/870 (7%)

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                     A   L       ++ + +LL  AR +   R  L    +             
Sbjct: 301  SQFGAAPIRAKYPLLLAERDRLAPLAQLLSAARALERSRGVLILGREAARRYERAKAARG 360

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
              +   L      ++    +    ++    + +             L  A     E+   
Sbjct: 361  VLDFSDLVDAARRLLASGASAWVHYKLDQGIDHV-----------LLDEAQDTSPEQWEV 409

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
            +       +     RAEA +        + + G        +      A+      V   
Sbjct: 410  IRPLVAEFFAGEGARAEARYGAASLPRTLFVVG----DEKQSIFSFQGADPRRFDTVRRE 465

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            L        +  I  + +  ++     +    +        L    E        +    
Sbjct: 466  LMRLTGGVGFEHIELRHSFRSAPGILAAVDTVFHAETAYQGLSALAEPPVHEAIHAALPS 525

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
               +   ++       D     +      + +   +            E   +       
Sbjct: 526  LVELWEPEAPSEKVDIDAWQRPLDAPAADDPKGRLARKIAGHIAARIREGFPVTGRHGTR 585

Query: 382  LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                     L+    +L   +  EL    + +  +  + ++  +    L +L +A+   +
Sbjct: 586  PARPGDFLILVRRRDSLFEAIIRELKEARVAVAGADRLTVAQHIAVMDLMALGDALLARD 645

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNA-LELVALRGNKNSYDIMDLKSLVLDRIATQK 500
            D +A+A  +K PL      +      + A L   AL             +  L R+  + 
Sbjct: 646  DELALACALKSPLFGLDDSDLMKLAPERAGLLEDALFARAGENPHWRAAAERLRRLRPEA 705

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                   + +R+   ++  A ++     +    L        S     + S      +  
Sbjct: 706  RRLRPFDFYARVLGRERGRAAMIARLGPEAADALDEMLALARSYENVEAPS--LAGFLAF 763

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
            L+                              +    +  +  + ++    ++   T  P
Sbjct: 764  LRRGGA----------------EAKRDMEAGRDEVRVMTVHGAKGLEAPYVILADTTSGP 807

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
               +++ L  +   +            G    +   +   +       ++  +    ++Y
Sbjct: 808  MTRRAAGLLRVELPD------------GRRAALHAPSKKGDTPAMARARAQGDAAQQDEY 855

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR--LLVLGGTDFFDNLKKRGQCY 738
                      A     L+   +      P      L R  L                + +
Sbjct: 856  RRLLYVALTRAESA--LVLAGADGGRKRPADCWYDLVRGALEPEAVEQPAAGFAGTVRRW 913

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                 +              P     A  R  S    +          A  +L       
Sbjct: 914  RSAVHEEIIAAPAVAAIAAAPDEAERALARALSRPIEEPAARAALRPSASSLLSAAPEGP 973

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
               +     RG L H ++  L      +       L+    D            +   R 
Sbjct: 974  ---EALALHRGELLHRLMAALASLPPEERAAPGRRLLAAAGD-----------FEEAARE 1019

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                 +   L                +P    +E     ++G  DR+ +L    + I D+
Sbjct: 1020 ELLTEALGVLAVPGLADLFGPGSLAEVPLVGELEDGT-PVSGRIDRLAVLGD-RILIADF 1077

Query: 919  KTGD--NPKKETAQKLIDPQLSLEAAALKA 946
            KT      +  +       Q++L A  L+ 
Sbjct: 1078 KTDRRVPREASSLPPAHVRQVALYARLLRR 1107


>gi|296132369|ref|YP_003639616.1| ATP-dependent DNA helicase PcrA [Thermincola sp. JR]
 gi|296030947|gb|ADG81715.1| ATP-dependent DNA helicase PcrA [Thermincola potens JR]
          Length = 741

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 73/734 (9%), Positives = 187/734 (25%), Gaps = 128/734 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           ++     T +A QE++       G   +      + +           ++         V
Sbjct: 52  NILAITFTNKAAQEMKERVERFLGYDSRDLW---VCTFHSACVRILRMEIEKLGYGRNFV 108

Query: 104 --SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
              +  +   L   +                                      +I   + 
Sbjct: 109 IYDSADQQTLLKNCLKELNIDDKKYPPRAMQV---------------------LISQAKN 147

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
             +           +   ++           + +  +L E NA       +  +    + 
Sbjct: 148 GLQDPAAFK----RQAQDYYQEVGA---RVYELYQHKLKENNAMDFDDLIMKTVELFEKF 200

Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                  +     I++     +  A  RL+  +A       V+   D       W     
Sbjct: 201 AQVLDYYQERFKYILVDEYQDTNHAQYRLIRLLAAKYRNLCVV--GDDDQSVYGWRGADI 258

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++            +P+  + KL       +  +    +V     GR             
Sbjct: 259 QNILDFE-----RDYPEARVIKLEQNYRSTKNILAAANHVVKRNIGRKEKSL-------- 305

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALIT 393
                T+  E  +P             A ++ +EA  IA  +       D   +  A++ 
Sbjct: 306 ----WTENEEGLLPV---------FFRAQDQYQEAYYIAERIYRLHLEEDRPYRDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R ++    + GI   I  G+          + + L  I    D +++  ++  P
Sbjct: 353 RTNAQSRVIEEVFIKNGIPYTIVGGLKFYERKEIKDILAYLRVISNPADNISLQRIINVP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                       R      +  +    N   I   ++L+                    +
Sbjct: 413 -----------RRGIGDTTMGKIAEYANYQGISHYEALIR-------------------A 442

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           EE   L    +  + +    +  ++     +     +++  + T    +           
Sbjct: 443 EEIPGLTGRSLSPVKKFGQLIEAFRQTARHSSVTELVNEVLQQTGYIRELEAEKSVEAQT 502

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            L   +E  +++  F                  D +  +     V    E +  + ++  
Sbjct: 503 RLENIKEFLSVTKEFDARAAE--------NRLEDFLAEVSLISDVDEYTEGADAVVLMTL 554

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + + G+ EG++P + +              +    +   +    +     
Sbjct: 555 HSAKGLEFPVVFIAGMEEGIFPHSRS--------------MLDNSQLEEERRLCYVGITR 600

Query: 694 TRH-LIYTRSLRENNIPTIA----SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
            +  L  T +   N          SR+++ +            ++  Q   +  R     
Sbjct: 601 AKERLYLTAAWERNLFGNTMFNPVSRFIEEIPPALLDTEGGERRRHEQESREMFRGSRDK 660

Query: 749 TKQPHYKRPKPFPP 762
            ++  +       P
Sbjct: 661 DRRSSFADRAHVSP 674


>gi|30019293|ref|NP_830924.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579]
 gi|296501840|ref|YP_003663540.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis BMB171]
 gi|81580749|sp|Q81GP9|ADDA_BACCR RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|29894836|gb|AAP08125.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579]
 gi|296322892|gb|ADH05820.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis BMB171]
          Length = 1241

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 97/893 (10%), Positives = 214/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KNDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLSDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 693

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 694  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 753

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 754  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 813

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 814  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 873

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 874  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 933

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             R       L + +IP     +     V    G         + +         +     
Sbjct: 934  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 993

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 994  LQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRAPIKTRP 1053

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 1054 RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1106

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------IHLTGFAD 903
                  K+   F     K   + + +   +P  M + +              I + G  D
Sbjct: 1107 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETILVQGVID 1166

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1167 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1218


>gi|255348990|ref|ZP_05380997.1| DNA helicase [Chlamydia trachomatis 70]
 gi|255503529|ref|ZP_05381919.1| DNA helicase [Chlamydia trachomatis 70s]
 gi|255507207|ref|ZP_05382846.1| DNA helicase [Chlamydia trachomatis D(s)2923]
 gi|296435215|gb|ADH17393.1| DNA helicase [Chlamydia trachomatis E/150]
 gi|296438934|gb|ADH21087.1| DNA helicase [Chlamydia trachomatis E/11023]
          Length = 634

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/575 (10%), Positives = 137/575 (23%), Gaps = 93/575 (16%)

Query: 156 IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
           I   +   +  EDL + +               +     + E+L   NA           
Sbjct: 142 ISQAKNRLQSPEDLDSKEYPDPT----------RTVYAEYQEQLRAANALDFDDLLFLTE 191

Query: 216 RAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
           +       +         ++I     +  A   +   +A   N   V+   D       W
Sbjct: 192 KLLRIPEVQQEYANHWKALLIDEYQDTNHAQYLITKRLAAAHNNIFVV--GDPDQSIYSW 249

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                 +              Q     L+  L+        +   +N +   +    +  
Sbjct: 250 RGANISNILNFE---------QDYSQALVVRLEENYRSCGTILEAANALIQNNSARLEKT 300

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKK 388
           L                          +      N+R+EA  +   +       D     
Sbjct: 301 LRSVKGPG-----------------DKIFCFTGKNDRDEAEQVLEEISNLHSYKDIPLSD 343

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
             ++      ++  +  L + G   +I  GI          + + L       D  A   
Sbjct: 344 ICILYRTNFQSQSFEAALLKRGYPYEIIGGISFYKRREIQDILAFLRLFSNNYDMAAFER 403

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            +                                     + +  L  +      T +P  
Sbjct: 404 TIS-------------------------------LKKCGIGATTLAALMNYAKTTDLPIL 432

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
           Q+     +K+   L         + L T+        GN  + ++   T+     + + +
Sbjct: 433 QACWDVLEKKSIRLTKKQQQGLFSYL-THFHQMEQLYGNCDLHEFINETIRITDYLSILK 491

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                    +   + L +              ++      +  L    +          L
Sbjct: 492 EDPETYEDRKNNLEQLLAETQIW-------GKSSENLPGFLEDLALKSSADETASSHDRL 544

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            ++    S+ L F  + L GL E + P   +K    +   +  L      +         
Sbjct: 545 KLMTIHNSKGLEFPVVFLVGLEENLLPHANSKGMHENIEEERRLCYVGITRAQEYLY--- 601

Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
              +  +      + R      + SR++  L    
Sbjct: 602 --LSRAKTRFLWGTERT----MVPSRFISELPKAL 630


>gi|237803037|ref|YP_002888231.1| DNA helicase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274271|emb|CAX11066.1| DNA helicase [Chlamydia trachomatis B/Jali20/OT]
          Length = 634

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/575 (10%), Positives = 136/575 (23%), Gaps = 93/575 (16%)

Query: 156 IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
           I   +   +  EDL + +               +     + E+L   NA           
Sbjct: 142 ISQAKNRLQSPEDLDSKEYPDPT----------RTVYAEYQEQLRAANALDFDDLLFLTE 191

Query: 216 RAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
           +       +         ++I     +  A   +   +A   N   +    D       W
Sbjct: 192 KLLRTPEVQQEYANHWKALLIDEYQDTNHAQYLIAKRLAAAHNN--IFVVGDPDQSIYSW 249

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                 +              Q     L+  L+        +   +N +   +    +  
Sbjct: 250 RGANISNILNFE---------QDYSQALVVRLEENYRSCGTILEAANALIQNNSARLEKT 300

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKK 388
           L                          +      N+R+EA  +   +       D     
Sbjct: 301 LRSVKGPG-----------------DKIFCFTGKNDRDEAEQVLEEISNLHSYKDIPLSD 343

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
             ++      ++  +  L + G   +I  GI          + + L       D  A   
Sbjct: 344 ICILYRTNFQSQSFEAALLKRGYPYEIIGGISFYKRREIQDILAFLRLFSNNYDMAAFER 403

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            +                                     + +  L  +      T +P  
Sbjct: 404 TIS-------------------------------LKKCGIGATTLAALMNYAKTTDLPIL 432

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
           Q+     +K+   L         + L T+        GN  + ++   T+     + + +
Sbjct: 433 QACWDVLEKKSIRLTKKQQQGLFSYL-THFHQMEQLYGNCDLHEFINETIRITDYLSILK 491

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                    +   + L +              ++      +  L    +          L
Sbjct: 492 EDPETYEDRKNNLEQLLAETQTW-------GKSSENLPGFLEDLALKSSADETASSHDRL 544

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            ++    S+ L F  + L GL E + P   +K    +   +  L      +         
Sbjct: 545 KLMTIHNSKGLEFPVVFLVGLEENLLPHANSKGMHENIEEERRLCYVGITRAQEYLY--- 601

Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
              +  +      + R      + SR++  L    
Sbjct: 602 --LSRAKTRFLWGTERT----MVPSRFISELPRAL 630


>gi|319788484|ref|YP_004147959.1| ATP-dependent DNA helicase Rep [Pseudoxanthomonas suwonensis 11-1]
 gi|317466996|gb|ADV28728.1| ATP-dependent DNA helicase Rep [Pseudoxanthomonas suwonensis 11-1]
          Length = 657

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 63/715 (8%), Positives = 165/715 (23%), Gaps = 124/715 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T ++ +E+R    +     +     I +   +  +    +   +         
Sbjct: 48  RIAAITFTNKSAKEMRERVAKRIRGDAADGLTICTFHALGLKFLQIEHEAA--------G 99

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R   +                           + P       +++ ++I   +     
Sbjct: 100 LKRGFSIFDADDAAAQV---------------KDLMPGAKPDAVEDVRNLISRAKNAGLS 144

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE----- 220
            E   AL   +       A          +  RL   NA          ++         
Sbjct: 145 PEQ--ALAVARSTREMEAAK-----LYARYQARLQTFNAVDFDDLIRLPLQILESNEDVV 197

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +   G +++     +  A  RL+  +A        +   D       W     ++ +
Sbjct: 198 RAWRERIGYLLVDECQDTNDAQYRLLRAIAGPAGNFTCV--GDDDQSIYAWRGANPENLD 255

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL          ++     +N +  R+       L  D +D  
Sbjct: 256 QM-----GQDYPDLQVIKLEQNYRCSNRVLR----AANALIARNPHKHLKTLWSDQADG- 305

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRN 397
                             + + E  +   EA  +A  +    +  +       ++    +
Sbjct: 306 ----------------ERIRVWECRDNEHEAEKVAGEIAFLHEARQVPWNEFCILFRSNH 349

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    +   ++ G             S L  I   +D  A    V+ P    
Sbjct: 350 QSRPLEKALQLLRVPYHLTGGTAFLERQEVKDALSWLRVIANPDDDAAFLRAVQSP---- 405

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                          + +    +A         +     + +  
Sbjct: 406 ------------------------------KREVGATSLARLAELAASRNMPLSRAAQSM 435

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L       +        +       +S +D  +        +     +      F
Sbjct: 436 GALQQLPPRAANGLGAFNDAIDDLRDNATKMSAADLVRRLAEKSGLLTELRAQCKDEASF 495

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +     L  L            A        +   +   +   K +  + + ++    ++
Sbjct: 496 QRRKANLDELAEWFEGGPRGATAGD------LAAQLALLSRNDKDDGGNQVRLMSLHAAK 549

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + + G           ++  L      +      E+ +        +    + L
Sbjct: 550 GLEFGYVFIIGC----------EDGTLPHDAAMEEGSLEEERRLMYVG----ITRAKKRL 595

Query: 698 IYTRSLR----ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
             + S         +    SR++  L          +         +        
Sbjct: 596 WLSYSRETRRFREKVRLKPSRFIDELPASELQRDGADPVADAMHKKERASAGFAA 650


>gi|262276564|ref|ZP_06054373.1| exodeoxyribonuclease V gamma chain [Grimontia hollisae CIP 101886]
 gi|262220372|gb|EEY71688.1| exodeoxyribonuclease V gamma chain [Grimontia hollisae CIP 101886]
          Length = 1131

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 116/1005 (11%), Positives = 252/1005 (25%), Gaps = 139/1005 (13%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            LL   LV   +  PL+        I V +    Q L+ E  +  G  + +      L  
Sbjct: 11  DLLKSLLVAIIQSKPLD-NPFQKELILVQSPGMAQWLKLEMAKEQGIAANVE---FPLPA 66

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
               +    +L      P  S   +     +L+ +   KL +   D      L       
Sbjct: 67  TFIWQMFTQILDDV---PQRSFFNKEAMTWKLMTVLPEKLDEPDFDELRR-YLDGDDDQQ 122

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               LA  +ADI D         E + A +NE+          +  +  +   +  ++L 
Sbjct: 123 KLYQLAGKIADIYDQYLVYR--PEWIKAWENEQPVDELAEEKRWQAVLWQALYDYTLQLG 180

Query: 204 AS--SPVGYQIALMRAEAEHLMKGTK----GPIIIAGSTGSIPATARLMSTVANHPNGAI 257
            S           +   + H  K         + + G +   P     +  +  H +   
Sbjct: 181 QSPFHRANLYEEFIDVLSSHKEKPEGLQGIDRVFVFGISALPPRYLDALKALGEHIDVHY 240

Query: 258 VLPGLDCHIPTAIWN-----TITEKSTNITSSNTTYSTHPQYSLA------------KLL 300
           +      +    I +               S  +      Q++L              LL
Sbjct: 241 MFTNPCRYYWGDIRDKRYLAKRAASMAPRISRASDTEEPAQFALPLMGEDDTAEVGNSLL 300

Query: 301 DFLDIKREDVKRL-----------GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
             +     D   L           G V          I    L     +     +     
Sbjct: 301 ASMGKLGRDNLLLISELQCHEVDQGFVEVPRDSLLHHIQADILDLVEPENIQETLTSESK 360

Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLE 405
             +      + +    +   E   +   L   L+ +     +   ++ AD N        
Sbjct: 361 LPVSADDRSLMVEVCHSPMREVEVLHDRLLDMLESDPTLSPRDIIVMVADINAYSPAIQA 420

Query: 406 L-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FG 458
           +         I   IS       +   +    LL+          +  +++ P     FG
Sbjct: 421 VFGNAPGERFIPFSISDRTADQESPILTTFLRLLSLPDSRCSAAELLEILELPAVMRKFG 480

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSR 511
           F  +   + K  +E   +R   +               + +                   
Sbjct: 481 FDNRQFEKVKLWVEEAGIRWGLDDNTASHFSLPHQHQNTWLFGLNRMLLGYAMPSSAGLY 540

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKN-STCGNLSISDWTKLTVTCLQNVCLDEHR 570
                 +    L   +   +       T    +     +   W +   +   ++   +  
Sbjct: 541 NDVLAYDEVQGLEAELAGKLGAFFRVMTATQTALLDTKNGEGWIQTLTSLFDDMFALDTD 600

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
               L  +     L +  +++ + G           D +   + GE V  +      +  
Sbjct: 601 --EELAGQLIRTQLDNWLTQLDDAGFTQTLALPIVRDYLKEKLGGERVSQRFLAG-QVNF 657

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
              +  R + F  + L G+N+G +P+  A   F     ++    ++            E 
Sbjct: 658 CTLMPMRSIPFQVVCLLGMNDGDYPRTIAPVGFDLMAGRTRAGDRSRRDDDRY--LFLEA 715

Query: 691 ANGT-RHLIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNL--------- 731
                + L  +   R   +N   + S  +  L         L G                
Sbjct: 716 LQSAQQRLYISYVGRSVQDNSEKVPSVLVTELLDYCRQGYCLAGDQSLPEHESGQRLLGT 775

Query: 732 -------------------KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
                              +     +L   R   +        R    P  +        
Sbjct: 776 LVHHNPLVPFSKQAFSQNRRSYAAEWLPAARGEGHAAAPFLDGR-ALNPAPDLDIGVIEL 834

Query: 773 SEIKQLINDPYAVYARRILKL--DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
           +E+++    P   +  R LK+  +      ++ +      L    + + +   +     +
Sbjct: 835 AELQRFWRLPVQYFFNRRLKVFFESPEGAMEEAEPFALDNLRRYQLRDALLSHVMA-KGD 893

Query: 831 INHLMKQIIDS----------HFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSI 878
               +                HF +  L      I         +               
Sbjct: 894 SEASLDAFFKQQKASGALPLSHFGELALESEQAGILAQYQRLKPMIAD------------ 941

Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
           ++  + I   +      + L G+ D  +  ++G +    Y++G  
Sbjct: 942 KRQALEINLTLVTSRGTVKLQGWLD--ERYRAGRIL---YRSGKV 981


>gi|126090201|ref|YP_001041682.1| hypothetical protein Sbal_4564 [Shewanella baltica OS155]
 gi|126174494|ref|YP_001050643.1| exodeoxyribonuclease V subunit gamma [Shewanella baltica OS155]
 gi|125997699|gb|ABN61774.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS155]
 gi|125999857|gb|ABN63927.1| hypothetical protein Sbal_4564 [Shewanella baltica OS155]
          Length = 1260

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 97/892 (10%), Positives = 227/892 (25%), Gaps = 119/892 (13%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           E++ A L   L +   +  L    L++  I V +      LR E  +  G  + +     
Sbjct: 11  EVLCAHLAAYLTQRLAFARL----LSNEHILVQSPGMSTWLRLEIAKQNGIAAALE---F 63

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +   DLL     +   +      +L +L+              Y  + L   
Sbjct: 64  PLPSSFTWQLCHDLLPDVPKDNAFTKAAMTWKLMQLLPRMLQDDTFGPLRHYLGNTLENT 123

Query: 140 ISPANA------------------IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-- 179
            +   A                    L   +ADI D        W  + A +  ++    
Sbjct: 124 PTTNTADTSEHFNISDMTADDIKLYQLCGRIADIFDQYLVYRPDW--ILAWEQNEHPESL 181

Query: 180 -----WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--AEHLMKGTKGPIII 232
                        L  A   +    +  +          L+ A    +  +      + +
Sbjct: 182 TKSLNEDQRWQPILWRALIAFNRDELNQSHYHRANLHSDLIAALNNPDTSLAKLPQRLFV 241

Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA----------IWNTITEKSTNIT 282
            G +   P T  ++  +A   +  ++      H                    ++     
Sbjct: 242 FGISSMAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAEL 301

Query: 283 SSNTTYSTHPQYSL-----AKLLDFLDIKREDVKRLGNV---SNEMYGRSMVISKSFLPP 334
             +     +P  +       +LLD L     +    G+           S     S L  
Sbjct: 302 WEDKLEVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNSPHSHASMLHG 361

Query: 335 DTSDMRNTDILENKIPNIQ-------------KCFSDVALIEADNEREEAISIAIALRMS 381
              D+     L+  +                 +    + +    +   E  ++   L   
Sbjct: 362 VQYDILEMQTLDRVLGPDAELYQNVKNRRLLKRDDESIRVKSCHSPLREVETLHDHLLEL 421

Query: 382 L----DENKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTS 432
           L    D   K   ++  D          +         I   I+       +   +   +
Sbjct: 422 LSNDVDLTPKDIVVMMPDVAAYAPYIDAVFSAKQDLHYIPYAIADRGAAQESPLINSFLN 481

Query: 433 LLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDI--MDL 488
           LL           I ++++ P  L +F   +  L   +  L+   +R  ++        +
Sbjct: 482 LLGINQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRDEQSRLKQGV 541

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSE--EDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            +   +  A       + +  S  +   +D  +   +     Q +  L+ +    + T  
Sbjct: 542 PAFEQNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQALGKLLNFIEVLDETAQ 601

Query: 547 NLSISDWTK-LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS--------- 596
            L++              +              +E +   +   + + +           
Sbjct: 602 ILALPQVGALRLAELTDLLDAFYDTDEDEREQLQEIRDAIAALEQELLSAGKPLDTNSLD 661

Query: 597 -------------CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                         +  +         + +    V  +     ++     +  R + F  
Sbjct: 662 TSMFEKLAQQSISGLSLSIEVLQQWFNQRLTESRVGQRYLAG-SVNFCTLMPMRSIPFKV 720

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
           + L G+N+GV+P+      F             + +   +      + +    L  +   
Sbjct: 721 VCLLGMNDGVYPRVQHPVGFDLMAHFGARKGDRSRRLDDRYLFLEALLSAREQLYISYIG 780

Query: 704 RE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK--- 758
           R   +N   IAS  +  L+          L    +  L  ++K+         ++     
Sbjct: 781 RSERDNSERIASMLVSELIEY------CQLCYLPETLLAQSQKVSSPIDPEDAEKALYKA 834

Query: 759 --PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                PL+        + +K    D  ++      +                
Sbjct: 835 IVSHQPLQPFDPKLYQAAVKSDDEDGSSIGQSYSQQWCPPNAAAAGTHAGRF 886


>gi|288958808|ref|YP_003449149.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Azospirillum sp.
           B510]
 gi|288911116|dbj|BAI72605.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Azospirillum sp.
           B510]
          Length = 773

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 79/721 (10%), Positives = 176/721 (24%), Gaps = 103/721 (14%)

Query: 19  REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78
           R  + AL    LV          +L   +   + T+RA              K+      
Sbjct: 37  RAAVEALDGPVLVLAGAGTGKTRVLTTRLAHLLMTRRAAAF--QILAVTFTNKAAREMRE 94

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
           +    V  E     L   + L   +  ++R  EL  L   +     D    L  +  L  
Sbjct: 95  RVAHLVGIEPEGWWLGTFHALAARI--LRRHAELVGLKSNFTILDTDDQVRLIKQ--LLE 150

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
             +  +  W A+ +   I+  +      + L            ++A        + + ER
Sbjct: 151 AENIDSKKWPARQILGAIERWKDRGLTPDRLADADGGDVAGGRVVA------IYRAYQER 204

Query: 199 LVELNASSPVG---YQIALMRAEAEHLMKGTK--GPIIIAGSTGSIPATARLMSTVANHP 253
           L  LNA        + + +++   + L    +    I++     +  A    +  ++   
Sbjct: 205 LRSLNACDFGDLLLHNLTILQNNPDVLADYHRKFKYILVDEYQDTNVAQYLWLRILSQAH 264

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
                +   D       W      +     ++                            
Sbjct: 265 KNICCV--GDEDQSIYAWRGAEIGNILRFETDFP-------------------------- 296

Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
           G    ++                    N   L   +         V +    +  EEA  
Sbjct: 297 GATIIKLEQNYRSTGHILAAASGLIANNQGRLGKTLWTEADGGEPVKVKAVWDGEEEARW 356

Query: 374 IAIAL--RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
           +   +           + A++       R  +      G+   +  G             
Sbjct: 357 VGEEIEGLQRKGTPLSQIAVLVRAGFQTREFEERFITLGLPYKVLGGPRFYERQEIRDAL 416

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
           +    +   +D +A   +V  P    G                                 
Sbjct: 417 AYFRVVNSGDDDLAFERIVNLPKRGVGPAAMQTLYTA----------------------- 453

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
                   +              E  EL   L   +   +     ++T   +        
Sbjct: 454 -------ARARGISLTEAGWALTETDELKPKLRSTLRGLLQDFFRWRTLMATVPHTELAR 506

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                +                 L   +E  T  + F  +             +++ +  
Sbjct: 507 SILDESGYTRMWQEDKTPEAPGRLENLKELITAMAEFENL-----------PGFLEHVAL 555

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
           +++      +      + ++    ++ L FD + L G  EGV+P   A +         +
Sbjct: 556 VMENA----EAAGIEQVTVMTLHGAKGLEFDHVFLPGWEEGVFPNQRALD---------E 602

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFD 729
             +   E+    A      A    ++ +  + R        + SR+++ +          
Sbjct: 603 TGIAGLEEERRLAYVGLTRARRRAYVSHAANRRLYGNWVSAVPSRFVEEIPQANVEAEAA 662

Query: 730 N 730
           N
Sbjct: 663 N 663


>gi|332306105|ref|YP_004433956.1| exodeoxyribonuclease V, gamma subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173434|gb|AEE22688.1| exodeoxyribonuclease V, gamma subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1159

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/722 (9%), Positives = 179/722 (24%), Gaps = 64/722 (8%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            + V +    Q L+ E  +  G  + I      L      +     +         +   
Sbjct: 36  VVLVQSPGMAQWLKIEIAQALGISANIE---FPLPSSYIWQLYKSHVNDLPEQSAFTKDN 92

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW- 166
              +L  ++            +    +       P     L + +ADI D       +W 
Sbjct: 93  MTWKLMSILPSMSE-----QTEFASIAQYLDEQQPLKLYQLCQKIADIYDQYLVYRPEWI 147

Query: 167 ----EDLHALKNEK-YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
               +  + L +       W         A   + + L E        +   L   E   
Sbjct: 148 LAWEKGENTLDDTDVDAQPWQPILW---RALVAYAKELAESPYHRANLHTRLLQELEQSP 204

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
               +  P+ + G +        + S +A + +  I       H    I +        +
Sbjct: 205 STNTSLKPLFVFGLSAMPVQQLEIFSALAKNRDVIIFWFNPSAHYWGDIVDNKQVLQAKL 264

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG---------------NVSNEMYGRSMV 326
            S     +   Q  L+ + D+L +    +   G                + +    +   
Sbjct: 265 QSLLVQANEAEQGGLSGVDDYLLVGNPLLASWGKQGRDYQDMILALEVELHDAFIEQEPH 324

Query: 327 ISKSFLPPDTSDMRNTDILENKIP-------------NIQKCFSDVALIEADNEREEAIS 373
                L  +   + +   +E                  I      + +    +   E   
Sbjct: 325 SLLEHLQHEVLALTHRGAMEPLSAQELLSNGEQYPKIPIDNDDMTLQVHACHSAVRELEV 384

Query: 374 IAIALRMSL----DENKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTT 424
           +   L        + +     ++  D      +   +         I   IS       +
Sbjct: 385 LHDQLLHLFAQNPELHPGDVIVMMPDVASYAPIIDGIFGGTDKGLSIPYAISDRNAQQES 444

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP------EKYLSRAKNALELVALRG 478
              +    L++          +  L + P  +  F       +        A       G
Sbjct: 445 PLLNSFIQLMSLHQSRIGLSDVLALCEVPAVQRKFDISPEEFDLLSVWLAEAGVRWGWDG 504

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
              +   +  +         Q+           + ++             Q +  L  + 
Sbjct: 505 QDKTRWSLPSEPQNTWLFGLQRLLAGYAMGGQSMFDDAHGQIAPYEQIEGQHVVALGKFY 564

Query: 539 TNKNSTCGNLSISDWTKLTVT-CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
               +    L+    +          + L +   LP+   +     L     ++   G  
Sbjct: 565 MFSQALGNALAFCQRSDSLRAKIEDALQLIDALYLPDDDDQTYILQLRQSLQQMTLHGHQ 624

Query: 598 IKANAIE--WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
            + + +   ++  + + +  + V  +      +     +  R + F  + L GLNEG +P
Sbjct: 625 FEGDIVHDVFLAELEKSLSSKGVGQRFLAG-YVNFCTLMPMRSVPFKVVCLLGLNEGDYP 683

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
           +      F    +        + +   +      + +  + L  +         +  S  
Sbjct: 684 RQVVPVGFDLMRIGKARRGDRSRRLDDRYLFLEAILSARKRLYLSFQGYSAKDNSERSPS 743

Query: 716 LQ 717
           + 
Sbjct: 744 IL 745


>gi|302383276|ref|YP_003819099.1| UvrD/REP helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193904|gb|ADL01476.1| UvrD/REP helicase [Brevundimonas subvibrioides ATCC 15264]
          Length = 799

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 81/734 (11%), Positives = 193/734 (26%), Gaps = 125/734 (17%)

Query: 2   HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             + P +      +   R +   L +       R           + +   T +A +E+R
Sbjct: 62  ATEGPVLVLAGAGTGKTRVLTTRLAHILATGRARP--------WELLVVTFTNKAAREMR 113

Query: 62  SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
                + G  +  L  + +   V  +                  ++R  EL  L   +  
Sbjct: 114 ERITHLIGPSAEGLRWLGTFHSVAAQI-----------------LRRHPELVGLKSSFTI 156

Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              D  + L  +  L    +     W  K+L+ +ID  +      E L     E +    
Sbjct: 157 LDTDDQERLLKQ--LLEAANIDTKRWTPKSLSGLIDHWKNRGWTPEKLPP--GEDFANGK 212

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGST 236
                        +  RL  LNA       +  +      A+     +     I++    
Sbjct: 213 GQTL------YAAYQSRLATLNACDFGDLLLHNLTILSKHADIAEEYRKRFRYILVDEYQ 266

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
            +  A    +  + +       +   D       W      +      +      P   +
Sbjct: 267 DTNVAQYLWLRLLTSSTGNVCCV--GDDDQSIYGWRGAEVDNILRFEKDF-----PGAKI 319

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
            KL          +     +      R                     L   +    +  
Sbjct: 320 VKLERNYRSTSHILGAASGLIAANRDR---------------------LGKTLWTEDQTG 358

Query: 357 SDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINID 414
             V +    +   E+  IA  +  +  +    +  A++       R  +       I   
Sbjct: 359 DKVRVRGVWDGDAESRLIADEIETAKRDGMKYRDMAVLVRASFQMRAFEERFVLLAIPYT 418

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALEL 473
           +  G             + L  I   +D +A   +V  P    G      + +      +
Sbjct: 419 VIGGPRFFERAEIRDAHAYLRLIQSEDDDLAFERIVNVPKRGIGDTSVQKILQIARHNGV 478

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
            A+   ++     +L++     +++   +                            +  
Sbjct: 479 SAMTAVRDLITSDELQARTRTALSSFVRD----------------------------LDR 510

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
                ++        ++ + +  T     +      R        +  ++  +L + +  
Sbjct: 511 WRALASDTRHWLLTETVLEESGYTDMQKADRATGPARLDNLKELTQAMQSFETLGAYLEH 570

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
               +  +                   +   S  + I+    ++ L F  + L G  EGV
Sbjct: 571 VSLVMDLD-------------------RGPSSDAVQIMTLHGAKGLEFPLVFLPGWEEGV 611

Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
           +P   + +    + ++ +  L  A   + +A  D  ++     L+Y R   +     + S
Sbjct: 612 FPSQRSIDEKGEKGLEEERRL--AYVGVTRAKQDARISFAANRLVYGRWTSQ-----LPS 664

Query: 714 RWLQRLLVLGGTDF 727
           R++  L +      
Sbjct: 665 RFVDELPIAHVEAE 678


>gi|305680768|ref|ZP_07403575.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
           14266]
 gi|305658973|gb|EFM48473.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
           14266]
          Length = 264

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 73/232 (31%), Gaps = 22/232 (9%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-KRINKN 827
             S S     +  P     R I KL              RGTL H  + ++   +R  + 
Sbjct: 7   ALSPSRANDYMQCPLLYRFRAIDKLPEPKTV-----AQVRGTLVHACLEDMHLWERPERT 61

Query: 828 TPEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
            P +   ++        +     E +P      +      +   +     +     + + 
Sbjct: 62  YPAVVKRLRPNWADMCGEDPSLLELVPEGEVYEFLVGCRSLLKGY--FLMENPQGFDALA 119

Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-QLSLEA 941
                   +   G+ + GF DR+D+  +G V + DYKTG  P            Q+   A
Sbjct: 120 CEKFVDAVLP-NGVPVRGFIDRVDVAPTGEVRVVDYKTGKKPLPR--YSGQAKFQMRFYA 176

Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK--KYSADELSEKSL 991
                     +   ++  L Y+++     +     + +  +    +L  K L
Sbjct: 177 LVWWRT--QGVIPHQL-RLMYLKVADSLYLAPSREELEFFERDLGDLWGKIL 225


>gi|229541419|ref|ZP_04430479.1| recombination helicase AddA [Bacillus coagulans 36D1]
 gi|229325839|gb|EEN91514.1| recombination helicase AddA [Bacillus coagulans 36D1]
          Length = 1243

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 93/892 (10%), Positives = 219/892 (24%), Gaps = 131/892 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              ++           +K  ++ +     E         +   +   AE    G+  P   
Sbjct: 339  DMQEMRPVIAELRTLVKKFAEAYGAVKAEKGIVDFSDLEHFCLDILAEKNEDGSLTPSEV 398

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKS 278
                      ++I            +M+ VA             D       +       
Sbjct: 399  AKAYQQQFKEVLIDEFQDVNMVQETIMNLVAKGAGFDGNRFMVGDVKQSIYRFRLAEPNL 458

Query: 279  TNITSSNTTYSTH-------PQYSLAKLLDFLDIKREDVKRLGN------VSNEMYGRSM 325
                  +                +     + LD      K++          +       
Sbjct: 459  FLKKYRDFDPEGRDTGLRIDLSKNFRSRKEILDGTNFIFKQIMGLKVGEMAYDSQAALVA 518

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
              S                 E    +I      +   E +  + EA  +A  ++  +DE 
Sbjct: 519  GASYPERDHPVKVALIDQADEAIEEDISD-EETLDRAELEQSQLEARYLAREIKKLIDEE 577

Query: 385  -------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
                           K   ++      A  +  EL + GI +              SI+ 
Sbjct: 578  QVYNPKTGTFRPIRYKDIVILMRSMAWAPTIMEELKQAGIPLYTELSTGYFDATEVSIML 637

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            SLL  I      + +A +++ P+         L R             K   D  D +  
Sbjct: 638  SLLKVIDNPYQDIPLAVVLRSPIVGLDEEALALIRIHEKRGPYYEAVKKFIADRPDPEEE 697

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
                    +    +  W+S   + D    +  +    Q           K       ++ 
Sbjct: 698  EAHEKV-SRFMEKLSVWRSVARQGDLSSLIWQLYRDTQFYDFAGGLPGGKQRQANLRALY 756

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            D  +              R +  +    +    +   S+  +    +  +A + ++    
Sbjct: 757  DRARQYEETSFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHASKGLEFPVV 816

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRL--------------------------------L 639
             + G   K  +   +  F+L                                       +
Sbjct: 817  FVAGLNRKFNMRDINQAFLLDKDFGFASKYIHPEKRITYPSLPQLAFKRKKKLEMLAEEM 876

Query: 640  NFDTLILGGLNEGVW----------------PKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                + L    E ++                     ++  L   +++             
Sbjct: 877  RVLYVALTRAKEKLYLVGTVKNLGKRLEKWGKTKRQEDWLLPDHVRAAAGTYLDWIIPSL 936

Query: 684  AAH-DFEMANGTR-HLIYTRSLRENNIPTIASRWLQ-RLLVLGGTDFFDNLKKRGQCYLD 740
            + H D  +  G+   ++     +         ++   +     G   + +  K G     
Sbjct: 937  SRHADGTVLFGSDGRVVLDDPSKWQIAVLPKEQFADIQEPEQVGEADWQHQVKAGLPVA- 995

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND-------PYAVYARRILKL 793
                                 P   +    S SE+K++  +        +   A + +  
Sbjct: 996  -AESAYKAQVFGRLSFRYSNEPATFRRAKQSVSELKRMHEEHDETNGTRFIPNAEKHIFD 1054

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                  +K     +RGT  H ++  +           +  L+++++      E     I 
Sbjct: 1055 RPRFMQEKSITPAERGTAMHMVMQHIPFDAP-PTYASVEALVEEMVKQELLTEEQADAIA 1113

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----------IHLTGFA 902
                    ++   F     +   +  ++   +P  +++ +             + + G  
Sbjct: 1114 A------EQLVRFFETDIGRRILAAGRVMREMPFSLSVPAAEIYRDASLADEHVLIQGIF 1167

Query: 903  DRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALK 945
            D +   K G + + D+KT    G         +       + QL+L + AL+
Sbjct: 1168 DCVAEEKDG-LVLLDFKTDNIHGRFKGGFEEAEPVLRKRYEVQLALYSRALE 1218


>gi|190576451|ref|YP_001974296.1| putative exodeoxyribonuclease V subunit gamma [Stenotrophomonas
           maltophilia K279a]
 gi|190014373|emb|CAQ48021.1| putative exodeoxyribonuclease V gamma chain [Stenotrophomonas
           maltophilia K279a]
          Length = 1115

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 108/977 (11%), Positives = 235/977 (24%), Gaps = 123/977 (12%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            +L   L  N R       LLA   + +P     + L++      G  + +     + G+
Sbjct: 18  DVLAALLARNVRAPVPGQPLLAPEVVLIPQVAMRRWLQATLAAEFGVAANL--EFLTPGE 75

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            V     A++    +         +      L    R+        +             
Sbjct: 76  FVARALKANVSGEQDDLDAAGLHWK------LYQALRDPTLLAQPPMRALQSYLAGGDAL 129

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               LA  LA + +  +   + W            + W   AD     +  W        
Sbjct: 130 KPWALAGELASVFEKYQAWRRDW-----------LLRWAAGADPADPQAILWRTI--TQG 176

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                      +           KG    +    +    P   R+M+T A        +P
Sbjct: 177 HDYRARRIQEYLDRFEGAGQPLPKGLPPRMSAFATLNISPDVLRVMATQARVGELHFYMP 236

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV---------- 310
                    +        +                  +LL+       D           
Sbjct: 237 TPVQSYWGDLQTLAERLRSGAPDPFGEA-----AGENRLLEAWGAAGRDFMAVLGSYEVV 291

Query: 311 ----------KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                         +    +    +  S           R           ++     + 
Sbjct: 292 HPAGEIAAYSDPEEDTRPTLDEGGLSDSLLHRLQRDLFHRRALPSGELRDGLRSDDPSLQ 351

Query: 361 LIEADNEREEAISIAIALRMSLDENK-------KKSALITADRNLARRVKLEL------T 407
           +        E   +   LR  L + +       ++ A++  D +        +       
Sbjct: 352 VHACHTRLRELQVLHDQLRSLLQDPRFDPPLQAREIAVLAPDIDPYVPYLEAVFGGRGGE 411

Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG--FPEKYLS 465
              I   ++   PL+    + +   LL           +  L+                 
Sbjct: 412 EEHIPYALADSSPLAGEPLADVFVHLLGLPVSRFGLNEVLDLLASAPLAEAAGLEAVDFD 471

Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
           R    L+    R   ++      ++   D    Q     +    +  SE D       ++
Sbjct: 472 RLHGWLQQAGARWGLDAKHRNQHQAPADDAYTWQFALDRLVLGHATGSEADLAGVAPWIE 531

Query: 526 HILQCITPLVTYKTN-------KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                +  L             +      L+ + W +  ++ L  +         +    
Sbjct: 532 LEGGALDALDRLLRLLRVLAIYQRRLGELLTPAQWRQRLLSLLDALLPTAPSSPNSQRAL 591

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E  + L + F++        +    E +        GE        +  +     +  RL
Sbjct: 592 ERLRKLLNQFAEDAAKAGFEEGVPPEVVRAHFAGALGEADTRAPLLTGGISFGRMVPMRL 651

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPF--LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           L F  + + GLN+G +P+         L+  + +                 F        
Sbjct: 652 LPFRVICVLGLNDGDFPRRDPAAGLNQLTAELDTPRRRPGDRSTREDDRFLFLQLFAAAQ 711

Query: 697 ----LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL--------------------- 731
               L Y  +   +      S  +  L+        D                       
Sbjct: 712 EVFYLSYLGADPRDGSVREPSVLVSELIDAAAAYHLDPPAAVRDFTVRHALQPFSPAAFG 771

Query: 732 ---KKRGQCYLDWTRKL-----DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
               +R      W              QP +  P P P  +A     +   +++ + DP 
Sbjct: 772 DGDPRRFSYRRQWHPAAGRLTGQRGGLQPWFDAPLPPPLDDAVEEEVALDTLRRFLCDPA 831

Query: 784 AVYARRILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
             +  + L L      ++  D      + RG    ++   +++  ++ +T  +   ++  
Sbjct: 832 GQFLAQSLGLRLADEVEEVDDLEPLVLSSRGPEKRSVQAAVVRATLSGDTEPLYPRLR-- 889

Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                    L      + +      + + L   +       +  V        +  G+ L
Sbjct: 890 ARGLLPSGPLGERQFEVEQLKTRPYASALLGWMQGEPLESRRYEV--------DIDGVRL 941

Query: 899 TGFADRIDLLKSGFVDI 915
            G     D    G V +
Sbjct: 942 HGRV--ADRHPEGLVRL 956


>gi|42525605|ref|NP_970703.1| hypothetical protein TDE0086 [Treponema denticola ATCC 35405]
 gi|41815616|gb|AAS10584.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
          Length = 945

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 96/297 (32%), Gaps = 38/297 (12%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK------ 822
              S +++K     P   +  ++L +    +     D  + G L HN++  L K+      
Sbjct: 645  KLSQTDLKIFTECPVLWFLEKVLSVFSENYDADIFDARNIGNLSHNVLEVLYKEIGSTDK 704

Query: 823  -RINKNTPEINHLMKQIIDSHFEKENLPPHIDI--IWRHLFHKISHS---FLEHEEKIQS 876
               +KN          I D   EK             + L  ++  +    LE +  +  
Sbjct: 705  YFNSKNLDNYIERASLIFDDLAEKSMDFRGALAKPFIQSLKKRVMEAVSFVLESDASLLD 764

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV-DITDYKT---------GDNPKK 926
              E  +V    +M   + GI   G  DR    + G    I DYKT         G     
Sbjct: 765  GYEPKWVEEWIEME--NDGILYRGKIDRASFPQDGRSGVIIDYKTNNMPAYSSYGKKNST 822

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDCRK-----VANLFYIRLKQKFKIDCITNDKKKY 981
                +L D Q+ +     ++         K     + + +++   Q+     + +++   
Sbjct: 823  AEEIELTDFQIPMYIFLAESRLKKDSTKEKKNFETIEHAWFLSFVQQKINKVVNDNEAIP 882

Query: 982  SADELSEKSLKNLIEIVTLLQNGE---------QPFISHLRLSEKSNIQSEYDHLAR 1029
                 SE+S ++    +    N           Q F     +S ++     + H+ R
Sbjct: 883  VTRSGSERSREDFQSSIDAFINEAERFVELVKNQDFTKPSSVSFETCSTCGFKHICR 939


>gi|328945990|gb|EGG40137.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1087]
          Length = 762

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 69/627 (11%), Positives = 171/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                    K + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYKAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLIYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  ++     +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVEKIRDFASSQEMSLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRERLDDYTVTDLVEAVLEKTGYAASLAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  S  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPSD-ESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRAS 587


>gi|239817531|ref|YP_002946441.1| exodeoxyribonuclease V, subunit gamma [Variovorax paradoxus S110]
 gi|239804108|gb|ACS21175.1| exodeoxyribonuclease V, gamma subunit [Variovorax paradoxus S110]
          Length = 1169

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 92/810 (11%), Positives = 195/810 (24%), Gaps = 93/810 (11%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
              L   + +     PL P  L      V +    + L+       G  +     ++  G
Sbjct: 17  AEWLADAVFQWIARQPLQP--LEEEVFLVQSNGVAEWLKMAMATHRGVCAAA--RVELPG 72

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
             +   +    +L  +  P  S + +L    RL+ +    +     +  P +      + 
Sbjct: 73  RFLWRAYR--QVLGRDAVPAQSVLDKLSMTWRLMELLPAVIQRAGFE--PLARFLADGAV 128

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNE----------------KYGMWWLLAAD 186
              + LA+ LAD+ D  +     W        +                +    W  A  
Sbjct: 129 PRRLQLAERLADLYDQYQVYRSDWLTAWEAGADILPRTATSIAAGAPPLEADQLWQAAL- 187

Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK------GPIIIAGSTGSIP 240
                   W E L  L+       +  L       L   T         +++ G T    
Sbjct: 188 --------WRELLSTLDDGERGAIRSRLHSRFTTALQTPTGLAMPVARRVVLFGMTHVPM 239

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT---------EKSTNITSSNTTYSTH 291
            T   +S +A H    + +P    +    I                      +       
Sbjct: 240 QTLEALSALATHSQVVLAIPNPSQYHWADIIEGRELLRIERRRQPLRNGQDLAAVPMEDM 299

Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK------------SFLPPDTSDM 339
             +    L  +    R+ V++L    +    R                            
Sbjct: 300 HAHGHPLLAAWGRQGRDFVRQLDAFDDAEATRQRFAGLKIDLFDTQPGVSLLQQVQAGIR 359

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----------NKKKS 389
               + +    ++      +    A + + E   +   L   L              +  
Sbjct: 360 DLEPLQDPPRASVPATDRSIVFHVAHSTQREVEILHDQLLALLAAPVRGPDAPSLQPRDV 419

Query: 390 ALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
            ++  D          +           I  DI+             +  LL    +   
Sbjct: 420 VVMVPDIAAFAPAIRSVFGQYRRGDPRFIPFDIADLQERGNNPVLVAMEWLLRLPQQRCR 479

Query: 443 FMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK--------SLV 492
              +  L+  P    +F      L R    +E   +R   +     +L+        + +
Sbjct: 480 ASEVRDLLDVPAVAQRFDLDNADLPRLAQWMEGAGIRWGLDLAHRNELELAACGEQNTWM 539

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSIS 551
                        P  ++    E       L   +   +   L              +  
Sbjct: 540 FGLRRMLLGFAGGPGARAFQGVEPYAEVGGLEASLAGSLADVLDALVQWWQEAASEATPV 599

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            W       L       +     +        L    S     G           +    
Sbjct: 600 QWGARVRALLDAFFAATNE-RERITLASARDALRDWLSACDTAGFDQCVPLEVVREAWLT 658

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            ID   +  +  ++  +     L  R + F+ + L G+N+G +P+++ ++ F    +   
Sbjct: 659 GIDAPNLHRRF-RAGGVTFCTLLPMRAVPFEVVCLLGMNDGDYPRSSTRSDFDLMGLPGQ 717

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF 728
                  +         E     R +   +   R   +N     S  + +L      ++ 
Sbjct: 718 RRPGDRSRRDDDRQLMLEALLSARQVFYVSWVGRSVRDNSVQPPSVLVSQLRDFLQANWS 777

Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
            +L                  + P    P 
Sbjct: 778 SDLAAARTTEHPLQPFSRRYFEVPALSDPA 807


>gi|47567601|ref|ZP_00238312.1| reticulocyte binding protein [Bacillus cereus G9241]
 gi|47555796|gb|EAL14136.1| reticulocyte binding protein [Bacillus cereus G9241]
          Length = 1241

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 93/899 (10%), Positives = 209/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQTMKRDKGMVDFTDLEHFCLQILSEQSESGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + D  +              R +  +    +    +    +  +    +  +  + ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNF-------------------------- 641
                 + G   +   +     F+L         F                          
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 642  ------DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWI 927

Query: 690  M--ANGTRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKL 745
                   R       L + +IP     +     V    G         + +         
Sbjct: 928  APSLYRHRDSEILLELGQGSIPDEIYGYSASWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARR 789
            +        +R +           Y          S +EIK+        ++ +    R 
Sbjct: 988  EKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIRTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITIEVLQEQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G         K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFSGGFEQAKPILEERYKVQLSLYAKALEKS 1218


>gi|313904430|ref|ZP_07837807.1| recombination helicase AddA [Eubacterium cellulosolvens 6]
 gi|313470766|gb|EFR66091.1| recombination helicase AddA [Eubacterium cellulosolvens 6]
          Length = 1236

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 106/916 (11%), Positives = 238/916 (25%), Gaps = 130/916 (14%)

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ--------------IALMRAEAEHL 222
               +       +    + ++    + N +     +                 +R +A   
Sbjct: 330  LRPYVQELVRLVLRFREAFSAEKRKKNIADFNDLEHFALEILLDKDEDGRRTLRTDAAKE 389

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-VLPGLDCHIPTAIWNTITEKSTNI 281
            +  +   ++I     S     R++  V+   +G        D       +     +    
Sbjct: 390  LAESFREVMIDEYQDSNFLQERILKAVSGDEDGRFNRFMVGDMKQSIYAFRMARPELFLE 449

Query: 282  -TSSNTTYSTHPQYS------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
              ++        Q             + LD      +RL                ++   
Sbjct: 450  KFNTYFPDPESTQVRIDLTRNFRSRKEVLDSSNALFRRLMIPEVGGIRYDDKAFLNYKAS 509

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNERE-EAISIAIALR-------------M 380
                   +      +   ++     +   ++   E EA ++A  +R              
Sbjct: 510  YPEPADPSFPQTELLVINREEEPFSSYKSSEERMELEAAAVAAKIRRLMAGTLVRGEGDE 569

Query: 381  SLDENKKKSALITADRNLARRV-KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                  +   ++        +V    L   GI     +G     T+  + + + L  I  
Sbjct: 570  LRPLRYRDIVVLLRSAKRWGKVWVKILQEAGIPCYALSGEGFFDTIEIATVLNYLRLIDN 629

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSR---------------AKNALELVALRGNKNSYD 484
                + +A +++ P+A     +    R               A  AL     +  K    
Sbjct: 630  PRQDIPLAAVLRSPIAGLDDEDLAWIRAKGGMEEGKVPLLYDAVLALAEQDEKLRKFVEQ 689

Query: 485  IMDLKSLV-----LDRIATQKNNTHVPHWQSRLSEEDKELAVL----------------- 522
            + D ++        + I      T    W + +   ++  A L                 
Sbjct: 690  LDDFRARAPRTEVHELIRKVLEKTGYGEWAAAMPAGEQREANLKMLIEKAVDYEKTSYHG 749

Query: 523  ---LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
                + +I +     V Y     ++  + ++   T      LQ   +            +
Sbjct: 750  LFNFIRYIDRLKKYSVDYGEVNLNSEADDTVRIMTIHQSKGLQFPVVFVSALGSEFNKAD 809

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
              K +    S  +          +++  +  R++     K    +   +  +    +   
Sbjct: 810  TTKAVLRHASLGLGLKVSDPEKRVQYPSVYRRVMQSHMKKQMYGEELRVLYVALTRAE-- 867

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI- 698
              + LIL G          A     +  M+ +       + +  +  DF      +  + 
Sbjct: 868  --EKLILTGQVSDSEKLTAAVAMQNNFRMKRESGQDETVERMLASPMDFTALLSAKTFLE 925

Query: 699  -------------YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
                                       S  +QR  VL        L +  + +     ++
Sbjct: 926  MILAVIPEEKDMKLHVVEAGELAAGEVSEKMQRSAVLEEISGLAKLPEEKKIFDPEVNRM 985

Query: 746  DYTTKQP--HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH----- 798
                +     Y+     P           ++  +L  D     A    + + +       
Sbjct: 986  MKEVRAFSYPYEEQAKMPAKLTVTEIKKRAQRTELQEDELPAAAVFEPEEEELIPKFLRG 1045

Query: 799  -FKKDPDRTDRGTLFHNIIT--ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI- 854
              +++     RGT++H+ +   +  K R      E    ++       EK  +    D  
Sbjct: 1046 TDEEEKTGASRGTVYHHFLECLDYGKLRPGATEEERTAFVEAERKRMLEKGLMTREDDAC 1105

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----------SIGIHLTGFADR 904
            ++   F +     L    K  S    +    P  M I              I + G  D 
Sbjct: 1106 MYTPDFVRFLACGLGQRMKAASDAGTLHREQPFVMDIPAKDIDSQWPEGENILVQGTIDA 1165

Query: 905  IDLLKSGFVDITDYKTGD--------NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
                + G   + DYKT          NP +    +    QL   AAAL       I   +
Sbjct: 1166 -YFSEEGKYVLVDYKTDRIHSLDAEGNPDERELVEKYHKQLEYYAAALTR-----ITGTE 1219

Query: 957  VANLFYIRLKQKFKID 972
            V  ++   ++   +I 
Sbjct: 1220 VGEMYIYSVRLGREIK 1235


>gi|256391609|ref|YP_003113173.1| RecB family exonuclease-like protein [Catenulispora acidiphila DSM
           44928]
 gi|256357835|gb|ACU71332.1| RecB family exonuclease-like protein [Catenulispora acidiphila DSM
           44928]
          Length = 351

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 72/265 (27%), Gaps = 21/265 (7%)

Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                                T       P P       P   S S     +  P     
Sbjct: 16  TAGAPDPVVGAAATVGVPVAATTAVTAPVPVPATTTVNLPMALSPSRAADFMTCPLLFRF 75

Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-------INHLMKQIID 840
           R I KL              RGTL H ++  L      + TP                 D
Sbjct: 76  RVIDKLPERKS-----AAATRGTLIHAVLEHLFDLPTGQRTPTSASGMLSPEWERMVQAD 130

Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
              +        D  W      +   +   E+  +  +E     +     I   G+ L G
Sbjct: 131 PELKALAEEAGGDEAWLKGAVDLLERYFRLEDPNR--LEPAERELFVHARIAD-GLLLRG 187

Query: 901 FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
           F DR+D+  +G + + DYKTG  P      K +  Q+   A  L               L
Sbjct: 188 FVDRLDVAPNGALRVVDYKTGRAPGPAFEGKAL-FQMKFYALVLWK-----TRGVVPRRL 241

Query: 961 FYIRLKQKFKIDCITNDKKKYSADE 985
             + L  + +I     D+    A E
Sbjct: 242 QLMYLGGESQIVTYDPDESDLRATE 266


>gi|56698684|ref|YP_169061.1| ATP-dependent DNA helicase UvrD [Ruegeria pomeroyi DSS-3]
 gi|56680421|gb|AAV97087.1| ATP-dependent DNA helicase, UvrD/Rep family [Ruegeria pomeroyi DSS-3]
          Length = 1118

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 82/846 (9%), Positives = 202/846 (23%), Gaps = 113/846 (13%)

Query: 150  KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA-DFLKIASKYWTERLVELNASSPV 208
              LA  +  +E    + E     +         LA   F  +    +  R          
Sbjct: 300  GALARQMPQLEALMLRVEAARDQRLALAAAQKSLALHRFAAVFLPEYDRRKQLRGWLDFD 359

Query: 209  GYQIALMRAEAE--------HLMKGTKGPIIIAGSTGSIPATARLMSTVA---------N 251
               +   +   +        + + G    I++  +  + P    ++  +A          
Sbjct: 360  DLILKARQLLTDPSVAAWVLYRLDGGIDHILVDEAQDTSPEQWDVIEKLAQEFTSGEGAR 419

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                  +    D       +      + +              S  + L      R    
Sbjct: 420  SGVERTIFVVGDKKQSIYSFQGADPDAFDRMQGEFGRKLRDSGSNLEDLTLEFSFRSSSA 479

Query: 312  RLGNVSNEMYGRSM-------VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
             LG V      R+        +                 I + +          V    A
Sbjct: 480  ILGLVDLVFRDRAQAGFRKESLHRAFKSDLPGRVDLWPLIDKVEDEEDGDWTDPVDRPGA 539

Query: 365  -DNEREEAISIAIALRMSLDE--------------------NKKKSALITADRNLARRVK 403
              +    A  +A  +R  +D                           L+    +L   + 
Sbjct: 540  RHHTVILAERVAGQIREMIDRGETIPVDGETPGTFARRRVRPGDFLILVQRRSDLFAEII 599

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
                  G+ I  +  + +   L    L +LL+ +    D +++AT++K PL  +     +
Sbjct: 600  RACKAAGLPIAGADRLKVGAELAVKDLAALLSFLATPEDDLSLATVLKSPLFGWSEQRLF 659

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                + + E       +           VLD +  Q +         R+         LL
Sbjct: 660  DLAHRRS-ERYLWAALRARRAEFAETLAVLDDLRGQTDFLRPYDLIERILTRHDGRRKLL 718

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                 +    +    +   +                               +W + +   
Sbjct: 719  GRLGAEAEDGINALLSQALAYER------------------SDIPSLTGFLVWMQTDDLE 760

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            +    + + +    +  +  + ++    ++     +                      D 
Sbjct: 761  IKRQMTGVGDMIRVMTVHGSKGLEAPIVILPDTAQRRAP------------------RDA 802

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
             I+      +W      +P L    +       + +   +    +         +   + 
Sbjct: 803  EIMLAEGTPLWRVPRDSSPALLSTAREAAQ---SREMNERLRLLYVALTRAEKWLIVAAA 859

Query: 704  RENNI-PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
             +         + +   +   G    +    R +        L      P+    +  P 
Sbjct: 860  GDLGSDGNSWYQAVANAMAEAGATGTEGDILRLEHGDWTAPALVEERATPYTA--ETPPD 917

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
              ++P     + +K +             K       + +     RG+  H ++  L   
Sbjct: 918  WASRPAPAPVAAVKTIAPSDLG-----GAKALPGEAGQDEEAAKARGSQLHLLLEHLPGT 972

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
                       L+  +     +                   +   L      +       
Sbjct: 973  DPAGWQDHARRLLPDLDALLRDDLLAE--------------ARGVLNSPALAEIFAPGTL 1018

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLE 940
              +P    + +    L G  DR+ L+    + + D+K+      + E   + +  Q+   
Sbjct: 1019 AEVPITAPLGAR--RLHGVIDRL-LIGDSEIGVVDFKSNAVVPARPEACPEGLLRQMGAY 1075

Query: 941  AAALKA 946
            A AL+ 
Sbjct: 1076 AYALEQ 1081


>gi|77456916|ref|YP_346421.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Pseudomonas
           fluorescens Pf0-1]
 gi|77380919|gb|ABA72432.1| exonuclease V subunit [Pseudomonas fluorescens Pf0-1]
          Length = 1150

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 86/879 (9%), Positives = 222/879 (25%), Gaps = 93/879 (10%)

Query: 50  YVPTKRAIQELRSEFI------EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            V +    Q L+          +  G        ++  G  + + +   ++L     P  
Sbjct: 44  LVQSNGIAQWLKLALAEDPEADDSGGCGIAAAIDVQLPGSFMWQLYR--MVLGREEIPAT 101

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           S + +     RL+ +    +     +      L           L++ LAD+ D  +   
Sbjct: 102 SLLDKAPLTWRLMRLLPQVITRPHFEPLQRF-LIHDTDLRKRYQLSERLADLFDQYQVYR 160

Query: 164 KKWEDLHALKNEKY-----GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
             W  L       +                   ++ W   L ++        +  + +  
Sbjct: 161 ADW--LEDWAEGHHQLRNVRGEAKPLPPTSCWQAELWRALLDDVGEQGMAQSRAGVHQRF 218

Query: 219 ------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI-- 270
                  E    G    +I+ G +         ++ ++      + +     +    I  
Sbjct: 219 MERINSLERAPTGLPQRVIVFGISSLPAQVLEALAGLSRFSQVLLCVHNPCRYHWADIVA 278

Query: 271 ------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                      +   N            Q++   L  +    R+ +  L +  +    R+
Sbjct: 279 DKDLLRHQYKRQARKNGMPVVLDSEMLHQHAHPLLAAWGKQGRDYINLLDSYDDPDSYRA 338

Query: 325 MV------ISKSFLPPDTSDMRNTDILENKIPNIQKCF---------SDVALIEADNERE 369
                   +     P +  +    DILE +  N  +             +    A + + 
Sbjct: 339 AFRNGRIDLFSENQPKNMLNQLQDDILELRPLNETRALWPAVDLTQDDSIRFHIAHSAQR 398

Query: 370 EAISIAIALRMSL----DENKKKSALITADRNLARRVKLE----LTRFGI---NIDISAG 418
           E   +   L            +   ++  D +            L R         ++  
Sbjct: 399 EVEILHDQLLARFSANPQLRPRDVIVMVPDIDSYAPHIRAVFGQLDRHDPRFIPFTMADQ 458

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRAKNALELVAL 476
                      +  LL           I  L+  P  +  F   E+ L      +E   +
Sbjct: 459 GQRGRDPLLIAVEHLLKLPDSRFPVSEILDLLDVPALRARFGVQERDLPTLHRWIEGAGV 518

Query: 477 RGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
           R   ++    +L       ++     +        V    +    E  +    L   ++ 
Sbjct: 519 RWGIDAGQRAELGLPDELEQNSWRFGLRRMLLGYAVGSSGACGDIEPYDEIGGLDAALIG 578

Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
            +  L+      +      +        +  L  +      +  +    +  +   +   
Sbjct: 579 PLVALLDALELSHQQLMKPAQPQEWGHRLQALMQLFFKPEDEHDDYLLAQLEELRETWME 638

Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                G   +       +     +D   +  +    + +     +  R + F  + L G+
Sbjct: 639 TCEAVGLLDELPLTVVREAWLAGLDQGRLSQRFLAGA-VNFCTLMPMRAIPFKLVCLLGM 697

Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NN 707
           N+G +P+      F           ++  +          + +    L  +   R   +N
Sbjct: 698 NDGDYPRAQPPLDFDLMGSDYRPGDRSRREDDRYL-LLEALLSARHQLYISWVGRSIRDN 756

Query: 708 IPTIASRWLQRLLVLGGTDF---------------FDNLKKRGQCYLDWTRKLDYTTKQP 752
               AS  + +L       +                  L+     Y     KL     + 
Sbjct: 757 SERPASVLIGQLRDHLANGWRSSDNKEDLLIAMTQEHPLQPFSSRYFHEEDKLFSYASEW 816

Query: 753 HYKR-------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL--DFIPHFKKDP 803
                               Q    S   ++  + +P   +  + LK+  +     + D 
Sbjct: 817 QVLHQPHEQNDTATMLVPHIQEEPLSLELLQDFLRNPVRHFFTQRLKVYFEAAQIPQADE 876

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
           +      L   ++++ +     ++   ++  ++      
Sbjct: 877 EPFVLDALQRYMLSDSLLGAALRHPDNVDQALESQARRL 915


>gi|197334998|ref|YP_002155338.1| exodeoxyribonuclease V, gamma subunit [Vibrio fischeri MJ11]
 gi|197316488|gb|ACH65935.1| exodeoxyribonuclease V, gamma subunit [Vibrio fischeri MJ11]
          Length = 1139

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 96/863 (11%), Positives = 207/863 (23%), Gaps = 106/863 (12%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            +L   +VE  R +PL+        I V +    Q L+ E  +  G  + +      L  
Sbjct: 11  DVLKSLVVELIRLNPLD-NPFEQEQILVQSPGMSQWLKIELAKELGIAANLT---FPLPA 66

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                    +L      P  S   +     +++ +    L            L    +  
Sbjct: 67  TFIWDLFTQVLDDV---PKRSAFHKEAMTWKIVTLLPELLKQEEFAPLQR-YLENDENQL 122

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNE----KYGMWWLLAADFLKIASKYWTERL 199
               LA  +ADI D       +W  L     E    +    W     +  +  +      
Sbjct: 123 KCYQLAAKIADIFDQYLVFRPEWIQLWEAGEEVAELEGEHPWQPIL-WRALYDQTLALGH 181

Query: 200 VELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
              + ++   + I  +    +           + + G T   P     ++ +  H +  +
Sbjct: 182 SPYHRANMFEHFIETLENYLQTGTLPKGMPKRLFVVGITSLPPRYLDALAALGQHIDVHL 241

Query: 258 VLPGLDCHIPTAIWN-------------------------TITEKSTNITSSNTTYSTHP 292
           +      +    I +                           TE+      +N     H 
Sbjct: 242 MFTNPCRYYWGEIRDRKYLARLEARNRLQVKWLDDHSEHIGDTEQLKGSIEANFEDELHT 301

Query: 293 QYSLAKLLDFLDIKREDVKRL---GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                 LL        D   L              +          +  +   +   + +
Sbjct: 302 SEVGNSLLASWGKLGRDNLCLLSEMEAQEIDAFVDVGNDNLLHSIQSDILNLEERSRDDV 361

Query: 350 PNIQKCFSDVA-------LIEADNEREEAISIAIALRMSL----DENKKKSALITADRNL 398
            +  +    ++       L    +   E   +   L        D   +   ++ AD N+
Sbjct: 362 LDNSQHKQSISSNDRSILLHSCHSPMREVEVLHDQLLDMFASDPDLKPRDIIVMVADINV 421

Query: 399 ARRVK------LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                          R+     IS               +L+           + TL++ 
Sbjct: 422 YSAAIQAVFGNAAFDRYI-PFAISDQSAEQENPVLLAFMTLMALPENRCGLSELLTLLEV 480

Query: 453 PLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK----SLVLDRIATQKNNTHVP 506
           P    +F F  +     K   E   +R   ++           +        Q+      
Sbjct: 481 PAVMSRFKFNAEQFDIVKRWAEETGIRWGLDNSTSAQFDLPEHNQNSWLFGIQRMLLGYA 540

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
             Q     E       +     +    L  +     +    L          T +  +  
Sbjct: 541 MEQGAGLFEGMASYEQVQGMNAEIAGNLAQFIDQLLTYQIILGQPHAITTWRTTINQLMD 600

Query: 567 D--EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
           D  +      L  +     L  L   + + G     +A    + +   + G     +   
Sbjct: 601 DFLDVELEGELVVKSIRDQLQKLEENLEDAGFDAPISAPIINNYLKNNLSGGKASQRFLA 660

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
              +     +  R + FD + L G+ +G +P+      F     +     ++        
Sbjct: 661 G-QVNFCTLMPMRSIPFDVVCLLGMTDGSYPRTMPVEGFDLMQKRMKPGDRSRRDDDRY- 718

Query: 685 AHDFEMANGTRHL-IYTRSLRE--NNIPTIASRWLQRL------------LVLGGTDFFD 729
               E           +   R   +N     S  +  L                  +   
Sbjct: 719 -LFLEALQSANKAFYLSYIGRSIRDNTEKAPSVLVSELLEYCQQGYCLEGDNELNPEASA 777

Query: 730 NLKKRGQCYLDW----------------TRKLDYTTKQPHYKRPK---PFPPLEAQPRTY 770
               +                         +   T K      P+         ++ +  
Sbjct: 778 KRLVKQLTIEHPLVPYSQQSFIGDNTSYASEWLPTAKLEGAAAPEFQTAPLVFASETKEL 837

Query: 771 SFSEIKQLINDPYAVYARRILKL 793
             +E+++    P A +  R LK+
Sbjct: 838 ELTELQRFWRLPVAYFFNRGLKV 860


>gi|255657915|ref|ZP_05403324.1| ATP-dependent nuclease subunit A [Mitsuokella multacida DSM 20544]
 gi|260850107|gb|EEX70114.1| ATP-dependent nuclease subunit A [Mitsuokella multacida DSM 20544]
          Length = 1283

 Score = 86.9 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 95/908 (10%), Positives = 219/908 (24%), Gaps = 154/908 (16%)

Query: 167  EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
            + L A K E+  + +     F        +E L   + +   G +   +R +A   ++  
Sbjct: 377  DALQAAKKERNVLDFSDLEHFALAVLCRDSEALAGASEADFRGERGKALRTDAAEDLREK 436

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT---- 282
               I++     +      +++ +A   N        D       +               
Sbjct: 437  YAVIMVDEYQDTNGVQEAILNLIARADNR---FTVGDVKQSIYRFRLADPYLFQAKYDAY 493

Query: 283  SSNTTYSTHPQ---------------------YSLAKLLDFLDIKREDVKRLGNVSNEMY 321
              N       Q                     +      + ++I+ ++  RL   ++   
Sbjct: 494  PENPGAEDMDQLITMKQNFRSRAEVLAPINFIFDQVMTREAMEIEYDEKSRLYPGASYPE 553

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
                +     L          +     +        +    E +    EA  IA  +   
Sbjct: 554  AEHTLKGPMELDIILRG--EPEQPVEGLSQAADAGDETGGEELEGFELEAQHIADRIAGL 611

Query: 382  LDENKKK----------------SALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            ++   +                 + L+ A +  A  +   L +  I              
Sbjct: 612  MESGYRVFDKDAGGYRPLAYRDIAVLLRAVKGKANTLLELLRKNSIPAYADVDGGYFEAN 671

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
               ++ +LL  I      + +A ++  P+  F   E    R     E +     ++    
Sbjct: 672  EVRLVLALLKTIDNARQEIPLAAVLVSPIGGFTMEELARLRMSVPDEDLFGALLRSHSPE 731

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              L+  + DR A    +     W+S          +  +         +   K       
Sbjct: 732  TPLEEGLADRAADFCASL--NRWRSYAVSHSVPELIWKLYRETGYYDYVGGLKGGLLRQA 789

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
                ++D                 R L +L   +   +++       +    +  +  + 
Sbjct: 790  NLRMLADRAAEYEKTNYRGLFRFLRFLEDLRKRDTDLSVARTLGASEDVVRIMSIHKSKG 849

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            ++    ++                 L    + LL+ +  I   L E         +    
Sbjct: 850  LEFPVVIVADIAKGFNQ--------LDARGTFLLHKELGIGPRLVERSTVGRQMYDTLPY 901

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---------------RSLRENNIPT 710
            + + + +    AE    +    +      R  +                  +   ++   
Sbjct: 902  QAIGARI---VAETKAEEMRVLYVAMTRAREKLILTGTLAAAKWEKQAARYARSLDSREL 958

Query: 711  IASRWLQR-------LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP----------- 752
                 + R        +        D    R    +DW   LD                 
Sbjct: 959  ALPDDMIREADSYLDWIAPAVARHTDGAPIREAAGVDWGEMLDAVEPAAHFAVNLLSAEA 1018

Query: 753  -----HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR------------------- 788
                   +          + R    S  ++L+    + +                     
Sbjct: 1019 IQPREEQEELDATLQSVREGRALPASPERELVEKRLSWHYDAEELPGITAKMTVSEIKQR 1078

Query: 789  --------------------RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
                                 + +       K      +RGTL H+I+  L         
Sbjct: 1079 FAESLREDEPAALPVAPAAPPVWRRPQFLQQKGRLSPAERGTLMHSILQNL----DLHGD 1134

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                 L  Q+            H D +          S      +      +++  +P  
Sbjct: 1135 LTREGLRAQVARMEVTGMIAAGHEDAVNYTSIESFCQS---SLGQRMQQAVRVWRELPFS 1191

Query: 889  MAIESIGIH-----------LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937
              I    ++           + G  D +     G + + DYKT  +   E  ++    Q+
Sbjct: 1192 RMIPVGEVNPTYAGSSEKIFVQGVIDVLFEEADGSLILLDYKTDRDTTPEKIRRHYAKQI 1251

Query: 938  SLEAAALK 945
             L   A++
Sbjct: 1252 ELYREAVE 1259


>gi|134300187|ref|YP_001113683.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum reducens MI-1]
 gi|134052887|gb|ABO50858.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum reducens MI-1]
          Length = 730

 Score = 86.9 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 71/548 (12%), Positives = 152/548 (27%), Gaps = 91/548 (16%)

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-----GPIIIAGSTGSIPATA 243
               + + E+L + NA       +  +R   E+             I++     +     
Sbjct: 168 ARVYRLYQEKLFKNNAVDFDDLIMLTVRLFKENPDVLAYYQNKFKYILVDEYQDTNHTQY 227

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            L++ +A       V+   D +     W      +            +P+  + KL    
Sbjct: 228 VLVNMLAESHRNVCVV--GDPNQSIYKWRGADINNILDFE-----RDYPEAKVVKL---- 276

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                                          +     N +  + K+   +   + + +  
Sbjct: 277 -----------------EQNYRSTGNILQAANAVIKNNAEAKDMKLWTSKGEGNRIHIYR 319

Query: 364 ADNEREEAISIAIA---LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
           A+NER E++ IA     LR S +   +   ++      +R  +    R GI   I  G  
Sbjct: 320 AENERFESMYIADRVKDLRFSHNRKYRDMVILYRTHAQSRVFEEVFLRQGIPYSIFGGQK 379

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
                    L S L  I    D  ++  ++  P                       +   
Sbjct: 380 FYDRKEIKDLLSYLRVIANPVDSQSLLRIINVP-----------------------KRGV 416

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
            +  I  L +   +R  T      +      +  + ++    L D        L + K  
Sbjct: 417 GAASIEKLTNFATERDLTVLMALALVDDIPGVPAKARKQCRELAD-------NLASLKKQ 469

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                      +    T    +    +       L   +E  T++  + K     +   A
Sbjct: 470 VEFLSVTEITEEVLNRTGYKAELELENTVEARTRLENLQEFLTVTKEYDKQQGEETGGLA 529

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           + +  I ++T L           ++  + ++    ++ L +  + L G+ EGV+P + A 
Sbjct: 530 DFLSTISLVTDL------DRHDPQADQITLMTLHSAKGLEYPVVFLTGMEEGVFPHSRA- 582

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRE----NNIPTIASRW 715
                        L   E+   +    +         L  T                SR+
Sbjct: 583 -------------LYDEEELEEERRLAYVGITRAEEELYITHCWERTLFGRTNMNAKSRF 629

Query: 716 LQRLLVLG 723
           L+ + +  
Sbjct: 630 LEEIPLEL 637


>gi|118619792|ref|YP_908124.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99]
 gi|118571902|gb|ABL06653.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99]
          Length = 769

 Score = 86.9 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 80/773 (10%), Positives = 192/773 (24%), Gaps = 112/773 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R   + + G ++  +  + +              L       + 
Sbjct: 60  GQILAITFTNKAAAEVRERVVSLVGGRAKYM-WVSTFHSTCVRILRNQAAL-------IK 111

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            +     +       R  L  I +D+  +     P    NAI            ++ E  
Sbjct: 112 GLNSNFSIYDADDS-RRLLQMIGRDMGLDIKRYSPRLLTNAISN----------LKNELI 160

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----A 219
             +                 A  +      +  RL   NA          +         
Sbjct: 161 DPDR----AVSDLSEDSDDLARTVASVYAEYQRRLRAANALDFDDLIGETVGILQAFPDI 216

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP--------NGAIVLPGLDCHIPTAIW 271
               +     +++     +  A   L+  +              A +    D       +
Sbjct: 217 AGHYRRRFRHVLVDEYQDTNHAQYVLVRELVGRGSEDEPGDVPPAQLCVVGDADQSIYAF 276

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
              T ++      +   +T            L+      + + + +N +  R+       
Sbjct: 277 RGATIRNIEDFERDYPDATTIL---------LEQNYRSTQNILSAANSVISRN------- 320

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKK 388
                     +   E ++         +    ADNE +EA  +A    AL    +     
Sbjct: 321 ----------SGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAERDEITYSD 370

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            A+     N +R ++    R GI   +  G+          + + L  +    D +++  
Sbjct: 371 VAVFYRTNNSSRSLEEVFIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSMRR 430

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
           ++  P    G   +                   +     +  L             +   
Sbjct: 431 ILNTPRRGIGDRAEACVAVYAENTGAGFSDALVAAAEGKVPMLNSRAEKAIAGFVELLDE 490

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYK--TNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                +  +     LV+ +L+        +  T+        ++++   +      ++  
Sbjct: 491 LRGRLDSSEGDVGELVEAVLERTGYRRELESSTDPQELARLDNLNELVSVAHEFSTDLAN 550

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
               +                          +    +    +    +  +T       + 
Sbjct: 551 AAEPE---------------------PDAEDVPDTGMLAAFLERVSLVADTDDIPEHGAG 589

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            + ++    ++ L F  + + G  +G++P   A +       +  L      +   +   
Sbjct: 590 VVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDDPTELSEERRLAYVGITR--ARQRL 647

Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
               A         RS     +    SR+L+ +                Q  L+W R   
Sbjct: 648 YLSRA-------IVRSSWGQPMLNPESRFLREIP---------------QELLNWRRLAP 685

Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
             +          F    + P   S S+   L+  P          L  +   
Sbjct: 686 KPSFSAPVSGAGRFGTARSAPVRTSTSKRPLLVLQPGDRVTHDKYGLGRVEEV 738


>gi|21233448|ref|NP_639365.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770412|ref|YP_245174.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21115293|gb|AAM43247.1| DNA helicase II [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575744|gb|AAY51154.1| DNA helicase II [Xanthomonas campestris pv. campestris str. 8004]
          Length = 728

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 65/722 (9%), Positives = 163/722 (22%), Gaps = 120/722 (16%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E+R         G +      I +   +           +        + +
Sbjct: 60  VTFTNKAAGEMRHRTDLQLRNGSRGMW---IGTFHGLAHRLLRLHWQDARLPEGFQVMDS 116

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R++                                       I+  + E ++
Sbjct: 117 DDQLRLVKRVVQSLELDETKYPPKQMGWW---------------------INEQKDEGRR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +      +    W             + ER             +       +     
Sbjct: 156 PQHIQ----PEPNDDWTEVRRQ---VYAAYQERCDRSGLLDFAELLLRAHELLRDTPALL 208

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A       V    D       W     ++  
Sbjct: 209 AHYRARFREILVDEFQDTNAIQYAFVRVLAG--ESGHVFVVGDDDQAIYGWRGAKVENVQ 266

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G  +  +       +      +     
Sbjct: 267 RFLKDFP--------------------------GAQTVRLEQNYRSSANILGAANAVIAH 300

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA  +    R  + +     + A++      
Sbjct: 301 NPDRIGKQLWTDSGDGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAQ 360

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L    +   +  G+            + L  +   +D  A    V  P     
Sbjct: 361 SRALEEALIAEQLPYRVYGGMRFFERAEIKDALAYLRMLTNRSDDAAFERAVNTP----- 415

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        +    LD +        +  W++ +    + 
Sbjct: 416 --------------------------TRGIGDRTLDEVRRLARANALSLWEAAMLCTQEN 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                  + L     LV     +          D   +     ++   +    L +    
Sbjct: 450 TLAARARNALATFLSLVGQLQAETGEMDLAERIDHVLMRSGLREHWAKESRGGLDSESRT 509

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E    L S+ S+             E +  +                  + ++    ++ 
Sbjct: 510 ENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMTLHSAKG 569

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + L GL +G++P   +              L+ + +   +    +      R  L
Sbjct: 570 LEFPIVFLVGLEDGLFPSARS--------------LEESGRLEEERRLAYVGITRARQKL 615

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
           +   +        +   + SR+L+ +      +    ++      L   R          
Sbjct: 616 VLCYAESRRIHGQDNYNVPSRFLREIPRDLLHEVRPKVQVSRTASLGAARGGPVHAVVDA 675

Query: 754 YK 755
             
Sbjct: 676 AP 677


>gi|283782302|ref|YP_003373057.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
 gi|283440755|gb|ADB19197.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
          Length = 669

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 68/689 (9%), Positives = 179/689 (25%), Gaps = 104/689 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E++     +   KS I P + +              +        + 
Sbjct: 50  RILAVTFTNKAAAEMQHRLSALLKTKSKIKPQVSTFHSHCVRLLRRHARV-LGYPEKFAI 108

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             R                   ++      L     P++ +    +L   I   +T   +
Sbjct: 109 YDR-----------------GDQESLARGVLRDIRVPSDLMRP-GDLVTQIGSWKTLGIR 150

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-----EAE 220
            ++   L +         +        K + + L    A       +          +  
Sbjct: 151 PQEAERLASTD-KEHLAASG------YKKYQKALRHAGAVDFDDLLMLTEELFKIAPQVR 203

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    +++     +     R++  +A+      V+   D       W     K   
Sbjct: 204 QQEARQFDHLLVDEYQDTNGLQYRIIRALADEHRNICVV--GDDDQSIYGWRGAEVKHIL 261

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
              ++                                  +       S      +     
Sbjct: 262 QFKNDWPD--------------------------AKVVRLEWNYRSTSAILETANKLIAY 295

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRN 397
           N    +  +   +       + +  +E EEA  +   +   L +   + +  A++     
Sbjct: 296 NKHRHDKVLKAARAGGERPRIEQYPSEVEEARQVVADIAFRLKDGTRDPRDFAILFRTNE 355

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             R ++ EL +  +   +              L + L AI    D +++  ++  P    
Sbjct: 356 QPRAIETELRKAKLPYVMLGSQSFFDRKEVRDLLAYLRAIESPRDEVSMLRIINTPPRGI 415

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G           ++E V     ++   + D+ S + +      +         +     +
Sbjct: 416 GE---------RSVETVLSEAVRSGKTVWDVVSNLSEGPTLFGDAEKTTTLSDKNVAAIR 466

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             + L+  +                +T    S+++ T+  ++                  
Sbjct: 467 SFSNLIQRY--------------SEATARGDSLAELTRKLISETGYEQEVRRIYPDPEEQ 512

Query: 578 EEEGKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDG-ETVKPKIEKSSTLFILGTLE 635
           +     +  + + +        K +   ++D +T         K K    + + ++    
Sbjct: 513 QMRLAAVEEVVNSVAAYEAEEEKPSISGYLDQVTLGQREMGDDKEKQLARNAIALMTLHA 572

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           S+ L F  + + GL +G+ P +              +   + ++   +    +      +
Sbjct: 573 SKGLEFPHVYMIGLEDGILPHS------------RSVKADSQDQIDEERRLCYVGITRAQ 620

Query: 696 H-----LIYTRSLRENNIPTIASRWLQRL 719
                 L  TR        T  SR+L  +
Sbjct: 621 ERLTLSLALTRMKWGKPRDTTPSRFLFEI 649


>gi|257456971|ref|ZP_05622152.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580]
 gi|257445680|gb|EEV20742.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580]
          Length = 661

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 74/692 (10%), Positives = 171/692 (24%), Gaps = 121/692 (17%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+     E+TGKK   L  I +   +  +     +           
Sbjct: 50  SQILALTFTNKAAREMEQRIKELTGKKLQNL-TISTFHALGVKILREYIDRL-------- 100

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
             ++   +   +                   L +     +   +      +   I+T +K
Sbjct: 101 GWRQNFSIYDEVD-------RNQLIKESAKELKIATETLDVYGM----GTLFSQIKTGQK 149

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
            +    A+                +     +   L   NA       +  ++   EH   
Sbjct: 150 NFTAQTAV---------------YRPLYNEYQAGLKLFNAVDFDDLIMLPIKLFTEHPDV 194

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               K     +++     +     ++M  +A+      V    D       W     ++ 
Sbjct: 195 LAVYKNRYRYVMVDEFQDTSIQQYQMMHLIADDN----VCVVGDDDQSIYSWRGANYENI 250

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +   +                              V  ++              +    
Sbjct: 251 RLFEKDFP--------------------------HLVEIKLEQNYRSTGTILAAANGVIS 284

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKKKSALITADR 396
            NT+  E  + +       + +   +NE  EA  IA  +    M  + +     ++    
Sbjct: 285 HNTNRKEKALWSGNGSGKPIEIFIPENEAAEADFIADTILTEKMRENRSYADFGVLIRTN 344

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L R ++       I   +S G           + S L  I   +D + +  ++  P   
Sbjct: 345 GLGRAIEEAFLDANIPYRMSGGTSFFQRKEIKDIISYLRVIANPDDDINLLRIINTPRRG 404

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G     +  A    +  ++R                            P      S  D
Sbjct: 405 IGKKTLEVLSAIATEKDCSIRMAI------------------HALLERPPDDFREKSLAD 446

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            E  V L+    + +                +   D+        +     +   + +L 
Sbjct: 447 LEEFVELISSERKQLLSGKGLANKVRKLVERIQYFDYLTQEFQKNEKAARFKFLNIESL- 505

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                                   +   +++ IT L   +      E +  + I+    +
Sbjct: 506 --------LQSIDTWETNPDNFDPSLYTYLNRITLLSRDD---QNEEDTGEVNIMTIHAA 554

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + + G  EG+ P   +                       +    +      R 
Sbjct: 555 KGLEFPVVFIAGAEEGIIPHARSMEENAG-------------DVEEERRLFYVAITRARD 601

Query: 697 LIY-----TRSLRENNIPTIASRWLQRLLVLG 723
            +      TR  +   +    S +L+ +    
Sbjct: 602 KLIITSCRTRRRQAGLLECSPSPFLEEIPAEL 633


>gi|228964186|ref|ZP_04125309.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar sotto str. T04001]
 gi|228795536|gb|EEM43020.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar sotto str. T04001]
          Length = 1166

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 98/893 (10%), Positives = 216/893 (24%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMQPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEPSENGEMNPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V      A  +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESAGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++           +      
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDVEAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 858

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             R       L + +IP     +     V    G         + +         +     
Sbjct: 859  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 918

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 919  LQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRAPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------IHLTGFAD 903
                  K+   F     K   + + +   +P  M + +              I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|327461179|gb|EGF07512.1| exonuclease RexA [Streptococcus sanguinis SK1057]
          Length = 1224

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 94/854 (11%), Positives = 217/854 (25%), Gaps = 107/854 (12%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGST 236
             L  DF+   ++ + ER    NA          +             +     +++    
Sbjct: 366  ELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILETFPEVRRFYQERYHEVMVDEYQ 425

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS- 295
             +      ++  ++    G       D       +     +  +            Q   
Sbjct: 426  DTNHTQECMLDLLSR---GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKL 481

Query: 296  ------LAKLLDFLDIKREDVKRLGNVS----NEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                      L+ L+   +  KRL +      +      +V               + ++
Sbjct: 482  IVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKREPNPANCASFLI 541

Query: 346  ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVK 403
                    +   D  L +A +  E  + I   +R+  +E    K   L+TA R     + 
Sbjct: 542  YEGSKESPEEEGDEGLPQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLIL 601

Query: 404  LELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                +  I +    G      ++   ++   L  I    +  A+  L+K P+  FG  E 
Sbjct: 602  AAFEQHQIPLVPDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDEL 661

Query: 463  YLSRAKNALEL---VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                 + + E           N+ +   L   ++ +   +K        QS  +      
Sbjct: 662  ARLSLQASQERSQENLYEKLLNALEGRGLNPTLVTQKLQKKLQHFHETLQSWRTYSKTHS 721

Query: 520  AVLLVDHI---LQCITPLVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNL 575
               L+  I         + T            ++S    +   +  + +          L
Sbjct: 722  LYDLIWKIYQDRFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRIL 781

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              + +    S   +   +    +  +  + ++     +         + SS+  IL    
Sbjct: 782  ENQHDL--ASVPVAAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTN 839

Query: 636  SRL--LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA-- 691
                    D  +             + +    +   ++L L +  + +         A  
Sbjct: 840  GVGIKYVADVSVSVEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAET 899

Query: 692  ------NGTRHLI------------YTRSLRENNIPTIASRWLQR------------LLV 721
                   G++ ++             + SLR          +  +              V
Sbjct: 900  KLYLVGKGSQEVLDKRQWGKSQQGRLSVSLRSQLSNFQDWLYAIQAVFSDENLAYETRFV 959

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-IN 780
                   + + +  +  L     L    +    +R         +  +   S I+   + 
Sbjct: 960  TDEELTVEEIGQINEPVLFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVR 1019

Query: 781  DPYAV--YARRILKLDFIPHFKKDPDRT-------------------DRGTLFHNIITEL 819
             P  +  +   I+  D +    +                          G+  H ++  +
Sbjct: 1020 TPSQIKKFYEPIMDTDGLDIMDERAAFRPQSSFELPDFGRKATVTGAQVGSAVHELMQRI 1079

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                        + L +   D   +K+   P I   +     ++             + +
Sbjct: 1080 PLDSSPSMAVLRSALAQVQADEAVKKQIQLPKIASFFETDLGRLL----------IENSD 1129

Query: 880  KIFVNIPAKM----AIESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
            ++    P  M            L G  D   +       + + DYKT             
Sbjct: 1130 RVRREAPFAMLKRDDASGQEFVLRGILDGYLLFED---RIILFDYKTDKYKDSSELIARY 1186

Query: 934  DPQLSLEAAALKAG 947
              QL L A AL   
Sbjct: 1187 RGQLDLYAQALSRS 1200


>gi|240136984|ref|YP_002961453.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           AM1]
 gi|240006950|gb|ACS38176.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           AM1]
          Length = 795

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 83/708 (11%), Positives = 185/708 (26%), Gaps = 115/708 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E++     + G     +P + +   +  +                  
Sbjct: 93  DILSVTFTNKAAREMKHRIGGLIGPAGEGMPWLGTFHAIGTKI----------------- 135

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +  +    +     W A++LA  ID  +     
Sbjct: 136 LRRHAELVGLKSDFTILGTDDQLRLMKQ--VISDQNIDEKRWPARSLAHTIDGWKNRGLS 193

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK- 224
            E +      +   +       L  A +     L  ++    +   + L R   + L   
Sbjct: 194 PEQVP---PGEAQSFAFGKGGQLYAAYQARLATLNAVDFGDLLLLCLKLWRENPDILANY 250

Query: 225 -GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                 I++     +  A    +  +A        +   D       W      +     
Sbjct: 251 QDRFRYILVDEYQDTNVAQYLWLRLLAQARKNVACV--GDDDQSIYGWRGAEVDNILRFE 308

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +                            G     +                   +N  
Sbjct: 309 HDFP--------------------------GATVVRLERNYRSTGHILAAASGLIAKNEG 342

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLARR 401
            L   +    +    V +  + +  EEA  +A ++           + A++       R 
Sbjct: 343 RLGKTLRTEDEAGEPVTVTGSWDSEEEARQVAESIESLQRRGHALSEIAVLVRISAQMRE 402

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           ++    + G+   +  G             + L       D +A   +   P    G   
Sbjct: 403 IEDRFVQVGLPYRVIGGPRFYERAEIRDALAYLRVTMNGADDLAFERIFNTPKRGLGDAT 462

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                A                     ++  +  +A  +             +E K  A 
Sbjct: 463 LQTLHAFA-------------------RADRIPLLAAARKLIET--------DELKPRAR 495

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            ++  +++  T  V     K       +I + +  T    ++   D   +L NL      
Sbjct: 496 SMLRGLVESFTRWVRLVETKPHPEVAQTILEESGYTEMWQKDRSADAAGRLENL------ 549

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
                 F + +E    + A       ++                  + ++    ++ L F
Sbjct: 550 ----KEFVRSMEEFPDMAAFLEHVSLVMEASEAEGA--------DRVSLMTLHAAKGLEF 597

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
           DT+ L G  +G++P   A +         +      E+    A      A     L +  
Sbjct: 598 DTVFLPGWEDGLFPNQRAID---------ESGRAGLEEERRLAHVGLTRARKRAKLSFAV 648

Query: 702 SLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
           + R +     TI SR++  L          ++ +    +     + D 
Sbjct: 649 NRRIHGLWSSTIPSRFIDEL-----PPQAVDVVEAPAHFSAGASRFDR 691


>gi|269956281|ref|YP_003326070.1| RecB family exonuclease-like protein [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269304962|gb|ACZ30512.1| RecB family exonuclease-like protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 302

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 80/268 (29%), Gaps = 22/268 (8%)

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            L    +     +     RP        +    S S     +  P     R I +L   P
Sbjct: 4   ILPVRAQPVEPVEPAEAVRPVEPVAASPRSPALSPSRANDFMQCPLLFRFRMIDRLPEPP 63

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH------ 851
                     RGTL H+++  L    + + TP+    +         +            
Sbjct: 64  SP-----AAARGTLVHSVLERLYDAPLGERTPDAALRLVPDEWRRLLESEPRYQELTAGD 118

Query: 852 --IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909
              +  W     ++ H++   E+  +  ++     +  +  +    + L G  DR+D+  
Sbjct: 119 GWTEEDWFGGAGRLLHTYFTLEDPNR--LQPEARELRVEHRLADGPL-LRGIVDRLDVAP 175

Query: 910 SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969
            G + + DYKTG +P+    +     Q+      L               L  + L    
Sbjct: 176 DGALRVVDYKTGKSPRPG-YESNALFQMRFYGLVLWRE-----RGVLPKMLQLVYLGDGQ 229

Query: 970 KIDCITNDKKKYSADELSEKSLKNLIEI 997
            +     +++    ++        + + 
Sbjct: 230 VLRAEPRERELELTEQKVRALWAAIEKA 257


>gi|147678864|ref|YP_001213079.1| superfamily I DNA/RNA helicase [Pelotomaculum thermopropionicum SI]
 gi|146274961|dbj|BAF60710.1| superfamily I DNA and RNA helicases [Pelotomaculum
           thermopropionicum SI]
          Length = 710

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 78/686 (11%), Positives = 180/686 (26%), Gaps = 110/686 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     +  + +  L  I +                         
Sbjct: 53  QILAITFTNKAAGEMRERVGALVPETARDL-WICTFHAACLRILRRQ--------ESFYG 103

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             R   +          L D IK+L  +     P + A A          I   +     
Sbjct: 104 RDRNFVIYDADDQLT-VLKDCIKELKLDDKKHPPRAVAAA----------ISQAKNMLMG 152

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
             +      +++          +      + +RLV+ NA          +R   E+    
Sbjct: 153 PGEYERHAYDQFS-------QAVSEVYSLYQDRLVKNNAVDFDDLIFLTVRLFREYPQVL 205

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +  A   L++ +A       V+   D       W     ++  
Sbjct: 206 AYYQNRFRHILVDEYQDTNHAQYVLVNLLAAAHRNLCVV--GDPDQGIYGWRGADIRNIL 263

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P+  + +L          ++   ++     GR                 
Sbjct: 264 SFE-----RDYPEAKVVRLEQNYRSTGFILEAANHIIRNNAGRR---------------- 302

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITADRN 397
                E ++         V +  A +E  EA  +A   + L+       +  A++     
Sbjct: 303 -----EKRLWTAAGRGFPVIVHYAADEHAEADFVAGRILRLKELEKRPYRDFAVLYRTHA 357

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++    R GI   I  G+          + + L  +   ND +++A ++  P    
Sbjct: 358 QSRVIEEVFVRAGIPYAIIGGLKFYERKEIKDMLAYLRLVLNPNDGLSLARIINVPRRGI 417

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G                               + +       +            + E  
Sbjct: 418 GE------------------------------ASLQKIAVFAREGGISLVEALERAAEIA 447

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            L              L       + +       +  + T    + +  +       L  
Sbjct: 448 GLTAAAKARSAALGALLRDLAERSSYSSVTELAREVMEKTGYRQELLAENTVEARTRLEN 507

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            +E  +++  F +  E               +  +     +    E +  + ++    ++
Sbjct: 508 LDEFLSVTGEFDRQAEEKG--------LRSFLENVALVTDLDYYDEGADQVALMTLHSAK 559

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + L G+ EGV+P + +         +  L      +   +              
Sbjct: 560 GLEFPVVFLTGMEEGVFPHSRSLPEPGELEEERRLCYVGVTRARERLYLT---------H 610

Query: 698 IYTRSLRENNIPTIASRWLQRLLVLG 723
            ++R+L       + SR+L+ +    
Sbjct: 611 CWSRNLYGAQRCNMPSRFLEEIPPHL 636


>gi|153833977|ref|ZP_01986644.1| exodeoxyribonuclease V, gamma subunit [Vibrio harveyi HY01]
 gi|148869715|gb|EDL68696.1| exodeoxyribonuclease V, gamma subunit [Vibrio harveyi HY01]
          Length = 1164

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 99/920 (10%), Positives = 235/920 (25%), Gaps = 89/920 (9%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+ E  +  G  + +      L      +    +L         +   
Sbjct: 41  QILVQSPGMSQWLKMELAKEFGVAANLE---FPLPATFIWEMFTQVLADVPKRSAFNKEA 97

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
              +L  L+      L +   +      L      +    LA+ +ADI D         E
Sbjct: 98  MTWKLMHLLPGL---LNEASFEPLAR-YLQDDTDNSKLYQLAEKIADIFDGYLVYR--PE 151

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK--- 224
            + + +  +          +  +  +   +  V L  S    ++  L     + L     
Sbjct: 152 WIASWEAGQMVPELEDEHPWQPVLWQALYDHTVTLGQS--PYHRANLYEHFIDTLENFNG 209

Query: 225 ---GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN--------- 272
                   + + G +   P     +  +  H +  ++      +    + +         
Sbjct: 210 NFDHLPKRLFVFGISSLPPRYMDALKAIGEHIDVHLMFTNPCRYYWGEVRDRKFLARLAA 269

Query: 273 ----------------TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                             TE+       N     H       LL  +     D   L + 
Sbjct: 270 KHRQHVVWQEDHSEVQGETEQLKGSLEENVVDELHTDVVGNSLLASMGKLGRDNMYLLSQ 329

Query: 317 SNEMY-------GRSMVISKSFLPPDTSDMRNTDILENKIPN---IQKCFSDVALIEADN 366
                        R  ++ +        +    D   +   +   +      ++L    +
Sbjct: 330 LESHEIEAFVDVERDSLLHQLQADILNLEEHQDDEQIDSSQHKQVVSLGDKSLSLHSCHS 389

Query: 367 EREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDISA 417
              E   +   L    D +     +   ++ AD N        +         I   IS 
Sbjct: 390 PMREVEVLHDQLLAMFDADPTLKPRDIIVMVADINAYSPAIQAVFGNAPGERFIPYSISD 449

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELVA 475
                 +   +    L+N          +  L++ P  L +F   E    +AK  +E   
Sbjct: 450 RTADQESPILAAFMQLVNLPNTRCLASELLELLETPAILKRFDLSEDDFLQAKQWVEESG 509

Query: 476 LRGNKNSYDIMDLK--------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
           +R   +S+   + +             +                  E        +    
Sbjct: 510 IRWGLDSHTGSEFELPETRQNTWQFGIQRMLLGYAMPESAGLFEAQEGSLSPYNEVQGMG 569

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            +    L  +    +     LS           L  +  D       L  E   K++   
Sbjct: 570 AELAGKLAHFIQQISQYRRKLSHVQSIDAWRETLVAMLDDF--FSVELEGEMALKSIRDT 627

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS---STLFILGTLESRLLNFDTL 644
            S++ E  +    +      I+++ +  +    ++ +      +     +  R + F T+
Sbjct: 628 LSQLKEQLTDAAFDDALSPSIVSQYLQNKLSGTRVSQRFLAGQVNFCTLMPMRSIPFRTV 687

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
            L G+N+GV+P++     F     ++    ++             + +  + L  +   R
Sbjct: 688 CLLGMNDGVYPRSMPPEGFDLMTGRTKPGDRSRRDDDRYL-FLEAVLSAQQSLYISYVGR 746

Query: 705 E--NNIPTIASRWLQRLLV------LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
              +N   + S  +  L+           D    +   G   L     +           
Sbjct: 747 SIQDNTERVPSVLVSELMEYCHQNYCLDGDQDQPVDDSGDTLLKELVNVHAMVPFSPSAF 806

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                    +    + ++  Q        + R +        F  + D  +    +   +
Sbjct: 807 QGSHSSYAKEWIPAALTQSNQSQGHARGEFNRALDDYLLGATFPIELDLVELQRFWRLPV 866

Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
                +R+         +M+   D  F  + L  +           +  + +        
Sbjct: 867 QYFFNRRLKVMFEPPLPVMED--DEPFVLDGLESYQIRDEL--LETLLETAITQPSAKAD 922

Query: 877 SIEKIFVNIPAKMAIESIGI 896
            ++       A+  +     
Sbjct: 923 VLKHFMSEQRAQGKLPVGAF 942


>gi|320108652|ref|YP_004184242.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
 gi|319927173|gb|ADV84248.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
          Length = 927

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/494 (11%), Positives = 139/494 (28%), Gaps = 69/494 (13%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+     T +A +E+     ++ G  S   P+I +   +       D+            
Sbjct: 54  SILAVTFTNKAAKEMGERVDKLIGHTSLAKPLIATFHSLCVRILRRDIEAM--------- 104

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
               +    L   +     +  + +  ++   L I                  +      
Sbjct: 105 ---RVNGIGLTKSFAIYDENDQQAVVKQALKRLGIDDKQLKP----------RVALGRIS 151

Query: 166 WEDLHALKNEKYGMWWLLAADF-LKIASKYWTERLVELNASSPVGYQIALMRAE-----A 219
           W   H +  ++Y +      +  +    + + + L + NA       +  +R        
Sbjct: 152 WAKNHMIDPQEYFLASANPLEEKIAHIFESYKKELFKNNALDFDDLLLEAVRLLKSSSEV 211

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     ++I     +      LM  +A       V+   D       W     K+ 
Sbjct: 212 RERYNRRYQYLLIDEYQDTNRPQYELMKLLAGTRGNVCVV--GDEDQSIYSWRGADIKNI 269

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      P+  + +L       +  ++  G V      R                
Sbjct: 270 LEFEKDF-----PETKVIRLEQNYRSTQNILEAAGAVVKNNVQRK--------------- 309

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-----KSALITA 394
                   ++   ++  S +   EA +   EA+ IA  ++  L E  +     + A++  
Sbjct: 310 ------GKELFTTREGGSMIGYYEAPDGENEALFIADRIQTYLREAGQKEDAPRCAVLYR 363

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
             + +R V+  L R+ I   +  G           L S L  +    D +A+  +V  P 
Sbjct: 364 TNSQSRLVEEALRRYQIQYHMVGGFSFYERAEVKDLLSYLKLVQNPRDSIALGRVVNSPA 423

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G                 +  +        ++  + +++   +  T +  ++  + +
Sbjct: 424 RGIGKTTMETLER--------MALSTGLSTWDAIERAIQEQLLPARALTALAGFRRLILD 475

Query: 515 EDKELAVLLVDHIL 528
               L     + + 
Sbjct: 476 ARAMLGSEFAETLA 489


>gi|284166465|ref|YP_003404744.1| UvrD/REP helicase [Haloterrigena turkmenica DSM 5511]
 gi|284016120|gb|ADB62071.1| UvrD/REP helicase [Haloterrigena turkmenica DSM 5511]
          Length = 1290

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 93/951 (9%), Positives = 219/951 (23%), Gaps = 149/951 (15%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK------------------ 224
              A         + + L E  A               +                      
Sbjct: 332  RLARHYTDVYADYHDALAEEGALDFDELVRTATGLLEDGAEHRSADGSNGSATRETIADE 391

Query: 225  --GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
              G    +       +      L++ + + P+   +L   D       W     +  +  
Sbjct: 392  ITGEWTQVYCDEFQDTDETQFALITELTDGPDRPDLLAIGDKDQAIYGWRGTDREGLDRL 451

Query: 283  SSNTTYSTHPQYSLA-KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            +         +  L  +    +             S  +        +     D +  R 
Sbjct: 452  ADAYDDHRGIELELNFRSRQEILDLTNHCDYGSQSSKRLREVGRTPGEYRTDSDATAGRE 511

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRN 397
            T    ++    +    +   +      + A +++  L    +   +      A+I     
Sbjct: 512  TGFETDEDRPDRVVKIESDAVGPSPADQVATTVSRLLNGEAENVPRRSLEDIAVIVRTNR 571

Query: 398  LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV------- 450
             A+ V  EL    I  +IS             L S L  +   +    +  ++       
Sbjct: 572  HAQAVADELRERRIPYEISGSPRGEIDPGIRTLVSYLRVLVDPDADAHLRRVLLYRYRLS 631

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
            +  LA     +  L  A  A+   A   +    D   ++         +      P    
Sbjct: 632  EADLATLQRADGSLYDAVMAVGPDAEVESTALEDPDRVRRARDHLAKLEDVRDVYPLSGF 691

Query: 511  RLSEEDKELAVLLV-----DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT------ 559
                 +       +     + + +    +  Y  +        S  D  + T+       
Sbjct: 692  VQRFREVTRLEWFLTSEEREELERVERFVDAYTGDSVIGTLTPSFVDALERTLQGGGSER 751

Query: 560  -----CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR--- 611
                    ++ +    +   L F+       S     +E     +A        +     
Sbjct: 752  TRGTQSADSIDVMTVHQAKGLEFDTVLVPYLSDEEWCVERDYAQRARYRLLAATLDDEIE 811

Query: 612  --LIDGETVKPKIEKSSTLFI-LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
              L+     +   E+   L + L   E+ L  F ++     +E      TA       + 
Sbjct: 812  SPLLADLATETVGEEWRVLHVALTRAENHLFVFGSVYDYDGDEDELGCATADACLSGDIE 871

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLI----------------YTRSLRENNIPTIA 712
             S    +       +A+ +         ++                 T     ++     
Sbjct: 872  WSVAGERMELWSSLRASFERVRETYPETVVDRTDELAAAASVDPGTITYYAGYDDRYVEP 931

Query: 713  S------RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                   R + RL  L   +            L+   +             +       +
Sbjct: 932  LETRDAIRTVHRLGRLLRGETLLPAADAASHALEAFGRFGTDRGDEGDAAAEIGEADSTR 991

Query: 767  PR-------------------------------TYSFSEIKQLINDPYAVYARRILKL-- 793
                                              +S++ ++     P   Y   +++   
Sbjct: 992  RVPTGRRLSALTTDTVRFPVETLSNATTLPVALRHSYTALETHDTCPRKHYLDHVVRAFD 1051

Query: 794  ------------DFIPHFKKDPDR-----TDRGTLFHNIITELIKKRINKNTPEINHLMK 836
                                            GT+FH++  E   +            ++
Sbjct: 1052 DPTAGVGGTTARPETDAATATDSPLESGSRLVGTVFHDVAEEAFYREYRTREAWREAAVR 1111

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA-IESIG 895
            Q+      +                +   +     +   +  E +   +P  +  +  + 
Sbjct: 1112 QLTARDLLEY------REGVLGCIDRFFEAAAADYDAPVADWEPVAAELPFSLEDVADVT 1165

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
              + G+ D I     G + + DYK       E        QL+L A A +          
Sbjct: 1166 GDVVGYIDSIRRTPDGELAVLDYK----ATAERIAPADATQLALYARACER-----RFDE 1216

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
             VA + Y+ + +         D  +             + E +  + +   
Sbjct: 1217 PVAAVGYVYVSEAVGPRVDLLDADELPP-------WPTVRERLAAVDDPSF 1260


>gi|62185554|ref|YP_220339.1| DNA helicase II, UvrD [Chlamydophila abortus S26/3]
 gi|62148621|emb|CAH64393.1| DNA helicase II, UvrD [Chlamydophila abortus S26/3]
          Length = 637

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 77/687 (11%), Positives = 179/687 (26%), Gaps = 118/687 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKK-STILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            +     T +A +EL+   + +  +   + +P++ +   +                    
Sbjct: 51  EILAVTFTNKAAKELKERILHLCPQAHGSDIPMVCTFHSLG------------------- 91

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETE 162
               +  L R I     +   II D      L         +   L+ ++   I   +  
Sbjct: 92  ----VFILRRSIQALNRENNFIIYDQSDTDKLLKQCLQKFNLKKTLSSSIQYHISQAKNR 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA----- 217
               EDL     E+Y    +          K + +RL E NA          +R      
Sbjct: 148 LLSPEDL---DPEEYIDPVVS-------IYKEYQQRLHEANALDFDDLLFLTVRLFQEFP 197

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           E           ++I     +  A  ++  T+A       +    D       W      
Sbjct: 198 EVRKEYSELWKALLIDEYQDTNHAQYKMAQTIAGKHQN--IFAVGDPDQSIYSWRGANIH 255

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +             L+  L+        + N +N +   +             
Sbjct: 256 NILNFEKDYP---------RALVLRLEDNYRSYGNILNAANALIQNNAS----------- 295

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITA 394
                  L+  + +++     + +     ++EEA  +A  +               +   
Sbjct: 296 ------RLKKDLRSVKGPGEKIRVFLGKTDKEEAEFVADEISRLHRRSQIPLSDICIFYR 349

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R  +  L R  I  +I  G+          + + L      +D +A    V  P 
Sbjct: 350 TNFQSRTFEDALLRRRIPYEILGGLSFYKRKEIQDILAFLRMFTAKSDVVAFDRTVNLPK 409

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G                             L + +    A            S+  +
Sbjct: 410 RGLGPSTISSL------------------IEYALTNNLPILEACNNVLQTQEVKLSKKQQ 451

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           E     + +   +      L               ++++   T+       + +      
Sbjct: 452 EGLREYLSIFQQLEHAYATL--------------PLNEFVVATIRITGYFQVLKEDPDTF 497

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
              +     L+S   +  +  +          + +  L    +       +  + ++   
Sbjct: 498 EDRKSNLDELASKTFEWEQQNTDGTLE-----NFLDDLALKSSTDDTELIADRVNLMTIH 552

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
             + L F    + GL E ++P   +K+ + +   +  L      +     A D       
Sbjct: 553 NGKGLEFRIAFVVGLEENLFPHANSKSSYENLEEERRLCYVGITR-----AQDLLYLTAA 607

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLV 721
           +      ++R        SR+L+ +  
Sbjct: 608 QTRFLWGTVRVMK----PSRFLKEIPR 630


>gi|327470754|gb|EGF16210.1| exonuclease RexA [Streptococcus sanguinis SK330]
          Length = 1224

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 95/959 (9%), Positives = 233/959 (24%), Gaps = 125/959 (13%)

Query: 80   SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            +L  +      + +  +  +   +  + +L               ++ K++  +   +  
Sbjct: 276  ALTVLAVLNELSSIEETAQILKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNEARK 335

Query: 140  ISPANAIWLAKNL--ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                      + L   D I+  + E     +L                DF+   ++ + E
Sbjct: 336  PMIERLRSFDQQLYQLDFIEQHQDECLPLVEL--------------LRDFVADFAQAYLE 381

Query: 198  RLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            R    NA          +             +     +++     +     R++  ++  
Sbjct: 382  RKKVENAFEFGDISHFAIEILEIFPEVRRFYQERYHEVMVDEYQDTNHTQERMLDLLSR- 440

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDI 305
              G       D       +     +  +            Q             L+ L+ 
Sbjct: 441  --GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKLIVLKENFRSHLEVLEA 497

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC---FSDVALI 362
              +  KRL +        +         P   +    ++    I    K          +
Sbjct: 498  TNDVFKRLMDEEVGEIDYNETHYLVAGNPAKCEPNPANLASFLIYEGSKDSLEEEGDEGL 557

Query: 363  EADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGI 419
                   E   +   +    +E     K   L+TA R     +     +  I +    G 
Sbjct: 558  PQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLILAAFEQHQIPLAPDDGA 617

Query: 420  P-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
                 ++   ++   L  I    +  A+  L+K P+   G  E      + + E      
Sbjct: 618  ANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDLGEDELARLSLQASQEHSQENL 677

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP----- 533
             +   + ++ + L  D +  +         ++  S         L D I +         
Sbjct: 678  YEKLVNALEGRGLNSDLVTQELQKKLQHFHETLQSWRTYSKTHSLYDLIWKIYQDRFYYD 737

Query: 534  -LVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             + T            ++S    +   +  + +          L  + +    S   +  
Sbjct: 738  MVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDL--ASVPVAAP 795

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
             +    +  +  + ++     +         + SS+  IL   +   + +   +   + +
Sbjct: 796  KDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVANVSVSVED 855

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI------------- 698
               P     +   +   Q +L          Q    +         +             
Sbjct: 856  PYAPNQLRISMD-TLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEALDK 914

Query: 699  ----------YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD-------- 740
                       + SLR          +  + +       ++      +            
Sbjct: 915  RQWGKSQQGRLSASLRSQLNNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGQINE 974

Query: 741  ----WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAV--YARRILKL 793
                    L    +    +R         Q  +   S I+   +  P  +  +   I+  
Sbjct: 975  PVLFPADDLADNRQSDDIRRALYILESVDQLNSQYRSAIELPSVRTPSQIKKFYEPIMDT 1034

Query: 794  DFIPHFKKDPDRT-------------------DRGTLFHNIITELIKKRINKNTPEINHL 834
            D +    +                          G+  H ++  +            + L
Sbjct: 1035 DGLDIMDERAAFRPQPNFDLPDFGKKAKVTGAQVGSAVHELMQRIPLDSSPSMAVLRSAL 1094

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM----A 890
             +   D   +K+   P I   +     ++             + +++    P  M     
Sbjct: 1095 AQVQADEAVKKQIQLPKIASFFETDLGRLL----------IENSDRVRREAPFAMLKQDE 1144

Query: 891  IESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
                   L G  D   +       + + DYKT    +          QL L A AL   
Sbjct: 1145 DSGQEFVLRGILDGYLLFED---RIILFDYKTDKYKEPSELIARYRSQLDLYAQALSRS 1200


>gi|261855720|ref|YP_003263003.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2]
 gi|261836189|gb|ACX95956.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2]
          Length = 728

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 66/736 (8%), Positives = 184/736 (25%), Gaps = 123/736 (16%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
           L L S+     T +A  E+R     +                  E    +  L    +  
Sbjct: 51  LSLHSMLAVTFTNKAAGEMRQRLSTLLAP--------------NEASSASSGLGGLWVGT 96

Query: 102 PVSNIQRLLELARLILIWRNK--LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
             S   RLL +        +   + D    L     +    +     W  + +A +I+  
Sbjct: 97  FHSLSNRLLRMHHQEANLPSSFQILDSDDQLRLVKRMLREANMDETRWPPRMVAGLINGW 156

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
           + +  +   L    +             +    + + +              +       
Sbjct: 157 KEQGLRARHLATSGDHLNDA--------IMPVYQAYEDICQRGGLVDFTELLLRATELLR 208

Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           +H       +     ++I     +          +    NG  +    D       W   
Sbjct: 209 DHDTLRQHYQRRFRQVLIDEFQDTNSLQYAWARLLVGEDNG--IFAVGDDDQSIYGWRGA 266

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             +  +  + + +            L  L+        + + +N +  R+          
Sbjct: 267 KIEHIHDFARDFS---------NTHLVRLEQNYRSTGHILDAANAIITRNQ--------- 308

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALI 392
                     L   +    +    +    A NE++EA  +   +  ++ +   + + A++
Sbjct: 309 --------GRLGKTLWTEGERGQPIRYYLAFNEQDEAYFVTQQIEQAVRDGLPRSECAIL 360

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R ++  L R G+   +  G+            + L  +   +D  A   ++ +
Sbjct: 361 YRANAQSRAIEEALIRAGLPYRVYGGLRFFDRAEIRDALAYLRLVANRDDDAAFERVINN 420

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P                               +  L+        +    +         
Sbjct: 421 P-----------------------ARGLGDKSLQALRDQARTAATSLWQASINLLASGAF 457

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
                      +D I            +        ++SD   + +            + 
Sbjct: 458 PPRASGGLRQFIDLI-----------DSLAVDSATQTLSDRVAICIDR-----SGLREQH 501

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI--ITRLIDGETVKPKIEKS----S 626
                +E  ++      +++        +  E   +  +   +   ++     +      
Sbjct: 502 KKDRDQERAQSKLENLDELVNAARGFVFDPDESPGMSELDAFLSQTSLDAGDAQGEAWED 561

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            + ++    ++ L F+ + L G+ EG++P   + +                 +   +   
Sbjct: 562 CVQLMTLHAAKGLEFEMVFLVGMEEGLFPHQMSIDE--------------PGRLEEERRL 607

Query: 687 DFEMANGTRHLIYTRSLRENNIPTI-----ASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
            +      + ++   S     +         SR+L  L      +     ++  +     
Sbjct: 608 CYVGITRAQKVLTLTSTESRRLHGRQMFPMPSRFLGELPGKLIDEIRPRAQQAFRAQSGL 667

Query: 742 TRKLDYTTKQPHYKRP 757
             K + T       + 
Sbjct: 668 PGKPESTEAGWRIGQA 683


>gi|83951554|ref|ZP_00960286.1| DNA helicase II, putative [Roseovarius nubinhibens ISM]
 gi|83836560|gb|EAP75857.1| DNA helicase II, putative [Roseovarius nubinhibens ISM]
          Length = 782

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 85/752 (11%), Positives = 191/752 (25%), Gaps = 126/752 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E++       G+    +  + +   +                  V  
Sbjct: 77  EILAVTFTNKAAREMKDRVAAHLGEAVEGMRWLGTFHSIC-----------------VKL 119

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +  L       +  W A+ LA +ID  +     
Sbjct: 120 LRRHAELVGLKSNFTILDTDDQLRLLKQ--LVQAAGIDDKRWPARQLAGVIDQWKNRAWT 177

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            + + A +   Y    +            +  RL ELNA       + ++     H    
Sbjct: 178 PDRVPASEASAYDGKGVA-------LYTLYQTRLRELNAVDFGDLLLHMVVIFQSHQDIL 230

Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
            +       I++     +  A    +  +A+       +   D       W      +  
Sbjct: 231 DRYQRWFRYILVDEYQDTNVAQYLWLRLLASGHRNICCV--GDDDQSIYGWRGAEVGNIL 288

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G     +       +            
Sbjct: 289 RFEKDFP--------------------------GAHVVRLEQNYRSTAHILAAASGVIAG 322

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------RMSLDENKKKSALIT 393
           N   L  ++    +    V LI   +  EEA  I   +       R          A++ 
Sbjct: 323 NKGRLGKELWTEAEGGEKVRLIGHWDGEEEARWIGEEIDSMQRGTRGMRPIGLDDMAILV 382

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              +  R  +      G+   +  G      L      +    +   +D +A   +V  P
Sbjct: 383 RASHQMRAFEDRFLTIGMPYRVIGGPRFYERLEIRDAMAYFRLVVSPSDDLAFERVVNTP 442

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                          + D     +   A + +   +   +    
Sbjct: 443 ----------------------------KRGLGDKAQQKIQMTARENSVPLLEGARI--- 471

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                   LL    L         +  +N T     + D     +   + +   +     
Sbjct: 472 --------LLEQKGLGGKGGAELGRFVENITRWGRMVGDEAISHIELAEMIL--DESGYT 521

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
            +W  ++          + E    ++   N   +++ ++ ++D E    + E    + I+
Sbjct: 522 EMWQNDKTPEAPGRLENLKELVKALEQFENLQGFLEHVSLIMDNE----QEEAGEKVSIM 577

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + L G  +G++P   + +         +  LK  E+    A   +   
Sbjct: 578 TLHAAKGLEFPAVFLPGWEDGLFPSQRSMD---------ESGLKGVEEERRLA---YVGI 625

Query: 692 NGTRHL-IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
                +   + +          S+   R +     +  + L   G     +       T 
Sbjct: 626 TRAEEICTISFAGNRRVFGQWQSQMPSRFIDELPEEHVEVLTPPGLYGGGYGAAGMGVTG 685

Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
               +            R       ++ I+ P
Sbjct: 686 DIESRVAAADGYNSPGWRRLQARASERPISQP 717


>gi|269836802|ref|YP_003319030.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745]
 gi|269786065|gb|ACZ38208.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745]
          Length = 738

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 73/708 (10%), Positives = 166/708 (23%), Gaps = 110/708 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           ++     T +A +E+R     + G +      + +   +       D  L       +  
Sbjct: 62  NILAVTFTNKAAREMRDRLEVLVGPERARQLTVGTFHALCVRILRRDGHLIG-----LDP 116

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
              + + A  I   R  L  +  D     P  +    + A              +++   
Sbjct: 117 RFTIYDDADQIDAVRQALKALNLDPKQFPPRPILSRISAA--------------KSQVVD 162

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
                         +W      +      + E L    A       +  +R   E     
Sbjct: 163 PARFAEQVET----YWEEI---VSRVYPRYQEILRRNRALDFDDLLVETVRLFDEQPDVL 215

Query: 226 T-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    I++     +      L+  +A       V+   D       W     ++  
Sbjct: 216 RRYQDWYRYILVDEYQDTNHVQYLLVHALAAGHRNLCVV--GDPDQSIYGWRQADIRNIL 273

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                                  +              D     
Sbjct: 274 EFKRDFPD--------------------------AAEVHLELNYRSTGVIVEAADQVIRA 307

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRN 397
           NT  +  ++         + + EA +E +EA  +   +R  +       +  A++     
Sbjct: 308 NTQRIRRQLRTENPRGDRLVVREAYDETQEAQFVVGEIRRLVQSGRYRYRDIAVLYRTNA 367

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L R  I   +  G             +LL  I    D +++  ++ +     
Sbjct: 368 QSRPLEDTLIRADIPYQLVGGTRFYERREIKDALALLRLIANPRDAVSLQRVLANTPLGK 427

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G   + L   +                             + +    V    + L+ E  
Sbjct: 428 GIGARTLQELERW---------------------------SSETGLPVYTGLAALAGESG 460

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD-EHRKLPNLW 576
             A  +     + +  +            ++ +S      V          E      L 
Sbjct: 461 APAPPVGTRPARLLADVYRTIAGLEVKSRSMPLSALFDAAVEQTGFAAQFQEGGDPEALE 520

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             E    L ++     E               +             E    + ++    +
Sbjct: 521 RWENVLQLRNVLMTYDELPESEALEI-----FLEESALIADADTIDESGDQVTLITLHAA 575

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + L G  EG+ P   +              +++  +   +    +      + 
Sbjct: 576 KGLEFPVVFLVGAEEGILPHARS--------------MESEAQVEEERRLFYVGITRAKE 621

Query: 697 -LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            L  T + R             R +     +  +    R       TR
Sbjct: 622 RLYITHTFRRTVWGRDDVSIRSRFVDAIPPELIETTALRTATPRPSTR 669


>gi|192824246|ref|YP_001994887.1| gp70 [Mycobacterium phage Pukovnik]
 gi|190610476|gb|ACE79996.1| gp70 [Mycobacterium phage Pukovnik]
          Length = 266

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 86/278 (30%), Gaps = 53/278 (19%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S S++ Q    P A    RI K+   P          +GT FH +     K         
Sbjct: 8    SVSQLNQYTRCPMAYKLARIDKVWARPAAWLP-----QGTAFHTVAEVYEKALAEGR-EM 61

Query: 831  INHLMKQIIDSHFEKE-----------------NLPPHIDIIWRHLFHKISHSFLEHEEK 873
                 ++I    + K+                         I R  F        +    
Sbjct: 62   SLERAQEIFREEYAKDIGELCAETPNFEWWTWSGPYNGERDIER-RFEIGLEQVEKFYNW 120

Query: 874  IQSSIEKI--------FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925
              +  + I         + +   + ++  GI + G+ D + ++  G   + DYKTG++P 
Sbjct: 121  RNTKGQTIWITPDGKPAIELSFNIELD--GIKVRGYIDAVVVV-DGKPRVRDYKTGNSP- 176

Query: 926  KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE 985
                    D QL + A A++      +   KV    Y    +K K    T+         
Sbjct: 177  ------GDDFQLGVYALAIE-----ILYGVKVDTGDYFMAGKKGKPAKPTDPYDLTEW-- 223

Query: 986  LSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
              EK  +   E+   +Q G+  F +     +      +
Sbjct: 224  TREKVTERFHEVEAKIQAGD--FEALPEPDK--CNFCD 257


>gi|145223651|ref|YP_001134329.1| RecB family exonuclease [Mycobacterium gilvum PYR-GCK]
 gi|315443977|ref|YP_004076856.1| RecB family exonuclease [Mycobacterium sp. Spyr1]
 gi|145216137|gb|ABP45541.1| putative RecB family exonuclease [Mycobacterium gilvum PYR-GCK]
 gi|315262280|gb|ADT99021.1| RecB family exonuclease [Mycobacterium sp. Spyr1]
          Length = 291

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 69/243 (28%), Gaps = 21/243 (8%)

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
              +    S S        P     R I +L              RG++ H  + +L   
Sbjct: 7   HPVRRPALSPSRAGDFKQCPLLYRFRAIDRLPEPSS-----TAQVRGSVVHAALEQLYAL 61

Query: 823 RINKNTPEINHLMKQIIDSHFEKENL------PPHIDIIWRHLFHKISHSFLEHEEKIQS 876
              +  PE    +          E         P +          +   +  +  +  +
Sbjct: 62  PAAERRPETALSLVAPAWERVVAEQPSLATDIDPALRAEMLEQARTLLSGY--YRLEDPT 119

Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID-- 934
             +        ++ +    + L GF DRID+  +G + + DYKTG  P +  A       
Sbjct: 120 RFDPQSCEQRVEVELADGTL-LRGFIDRIDVAPTGEMRVVDYKTGKAPPEARALAEFKAM 178

Query: 935 PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            Q+   A AL             A L  + L     +D      +    ++      + +
Sbjct: 179 FQMKFYAVALLRS-----RGSLPARLRLVYLADHQILDYTPTLDELERFEKTLMAIWRAI 233

Query: 995 IEI 997
              
Sbjct: 234 QSA 236


>gi|198284778|ref|YP_002221099.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666705|ref|YP_002427463.1| DNA helicase II [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249299|gb|ACH84892.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518918|gb|ACK79504.1| DNA helicase II [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 709

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 65/756 (8%), Positives = 166/756 (21%), Gaps = 130/756 (17%)

Query: 10  TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEI 67
           T+            +     L     +     +   ++     T +A + +R     +  
Sbjct: 16  TLPSGPALVLAGAGSGKTRVLTSRIAHLLEGDVYPGAILAVTFTNKAARAMRGRLDGMVA 75

Query: 68  TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
              ++     + +   +          +              +  A        ++    
Sbjct: 76  MDLRALW---MGTFHGIAHRLLRMHHEVLG------LPADFQVLDADDSQRLLRRIMREA 126

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
           +    + P            +A  +    D         E +   +              
Sbjct: 127 QMDEKQWPPR---------AMAGRIGRWKDE----GWGPEQVQQYEGPAAAP-------- 165

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATA 243
                  +                +  +R      +          I++     +     
Sbjct: 166 FIPIYSAYEAAKKRSGLVDFGDLLLYALRLWESPEILDHYQRRFQHILVDEFQDTNAVQY 225

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             +  +A H     +    D       W     ++      +   +              
Sbjct: 226 AWLKGLARHGQ---IFAVGDDDQSIYAWRGARVENLLRFGEDFAGAR------------- 269

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                           +       +      +     N+D L   +   +     + L  
Sbjct: 270 -------------VVRLEQNYRSTAPILQAANAIIAHNSDRLGKTLWTAEPGGESIQLYT 316

Query: 364 ADNEREEAISIAIALRMSLDENKKKS--ALITADRNLARRVKLELTRFGINIDISAGIPL 421
           A NE +EA  +   ++  LD+  +++  A++      +R  +  L R G+   +  G+  
Sbjct: 317 AYNEFDEARYVVGRVQQWLDDGGRRADCAILYRSNAQSRAFEEVLVREGMPYRVYGGLRF 376

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                     + L      +D  +   +V  P    G       R               
Sbjct: 377 FERAEIKDTLAYLRLTANRHDDASFERVVNVPARGIGAVSVERLRNLARER--------- 427

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                                               + A  L    +     LV     +
Sbjct: 428 -------------------------------GLSLWQAAGELGQPKISAFLNLVDDLAAR 456

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE----EGKTLSSLFSKIIETGSC 597
            +        +         +    +  R    L   +      +  +  +S     G  
Sbjct: 457 TAEADLGERVEMVLAHTGLREWHGREGDRAEGRLENLDELINAARGYAQDWSADPNLGDL 516

Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                    + +T                 + ++    ++ L F  + L GL EG++P  
Sbjct: 517 APQPGNMLSEFLTHAALEAGDGAGDAWEDCVQLMSLHSAKGLEFPLVFLVGLEEGLFPHQ 576

Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY-----TRSLRENNIPTIA 712
            +              L+  +    +    +        L+      +R L  +   TI 
Sbjct: 577 RS--------------LEDPQGLAEERRLCYVGMTRAMRLLVISHAESRRLHGSERMTIP 622

Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
           SR+L+ +      +     +          +  +  
Sbjct: 623 SRFLREIPRELLRELRPRARVSRPAMPVRVQAPEMP 658


>gi|46199364|ref|YP_005031.1| DNA helicase uvrD [Thermus thermophilus HB27]
 gi|46196989|gb|AAS81404.1| DNA helicase uvrD [Thermus thermophilus HB27]
          Length = 692

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/485 (11%), Positives = 120/485 (24%), Gaps = 44/485 (9%)

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            ++D  +      + L     E Y     L+   L      + E L    A       + 
Sbjct: 139 ALLDRAKNRGVGLKALLGELPEYYAG---LSRGRLGDVLVRYQEALKAQGALDFGDILLY 195

Query: 214 LMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
            +R   E      L++     I +     + P   R    +A     A ++   D     
Sbjct: 196 ALRLLEEDEEVLRLVRKRARFIHVDEYQDTSPVQYRFTRLLAGEE--ANLMAVGDPDQGI 253

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             +     K+    +       +P+  + +L                             
Sbjct: 254 YSFRAADIKNILDFT-----RDYPEARVYRL---------------------EENYRSTE 287

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
                 +   ++N   LE  +  +++    V L  A++ REEA  +A  +        + 
Sbjct: 288 AILRFANAVIVKNALRLEKALRPVKRGGEPVRLYRAEDAREEARFVAEEIARLGPPWDRY 347

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            A++      +R ++  L   GI   +  G+          L +         D +++  
Sbjct: 348 -AVLYRTNAQSRLLEQALAGRGIPARVVGGVGFFERAEVKDLLAYARLALNPLDAVSLKR 406

Query: 449 LVKHPLAKFGFPEKYLSRAKNAL-----ELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
           ++  P    G       +                  +       L+  V      Q    
Sbjct: 407 VLNTPPRGIGPATWARVQLLAQEKGLPPWEALKEAARTFPRPEPLRHFVALVEELQDLVF 466

Query: 504 HVPHWQSRLSEEDKELAVLLVDHIL-QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                  R   E  +    L +         L   +    +      + D+        +
Sbjct: 467 GPAEAFFRHLLEATDYPAYLREAYPEDAEDRLENVEELLRAAKEAEDLQDFLDRVALTAK 526

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                E      L      K L      ++     +       +  +  L +   +    
Sbjct: 527 AEEPAEAEGRVALMTLHNAKGLEFPVVFLVGVEEGL-LPHRNSVSTLEGLEEERRLFYVG 585

Query: 623 EKSST 627
              + 
Sbjct: 586 ITRAQ 590


>gi|270291088|ref|ZP_06197311.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici 7_4]
 gi|270280484|gb|EFA26319.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici 7_4]
          Length = 757

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 83/713 (11%), Positives = 186/713 (26%), Gaps = 134/713 (18%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLL-LSYNLNPP 102
           ++     T +A +E+R     + G+ +       + +   +       D+  + YN    
Sbjct: 56  NILAITFTNKAAREMRERVANLLGEVASEIW---VSTFHALCVRILRRDIEQIGYNRAFS 112

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII--DIIE 160
           +++      L + +L           DL  +  +  P S    I  AKN  D++     +
Sbjct: 113 IADPSEQRTLIKHVLA----------DLNYDPKVYDPRSVLGKISNAKN--DLMTPADYQ 160

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                  D                 + +      +  RL    A       +  +R   +
Sbjct: 161 ENASNPHD-----------------EAVGKIYDEYQRRLKANQALDFDDLIMQTIRLFEQ 203

Query: 221 HLMKGT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                         I +     +  A  +L++ +A       V+   D       W    
Sbjct: 204 SPETLQFYQNKFHYIHVDEYQDTNQAQYQLVTMLAKGFRNLCVV--GDSDQSIYGWRGAD 261

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++     S+                               +  +              +
Sbjct: 262 MQNILNFESDYPD--------------------------AHTVMLEQNYRSTQNILNAAN 295

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSALI 392
                N +    ++       + ++        +E   I   +R  ++EN       A++
Sbjct: 296 DVIANNVERKPKQLWTDNDEGAKISYYRGQTGNDEVHFIVQQIRKQIEENNFDYGDFAIL 355

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R V+    +  I   +  G           + S L  I    D M+   ++  
Sbjct: 356 YRTNAQSRLVEDTFVKANIPYTMVGGHKFYDRKEIRDVLSYLTLIANEEDSMSFERVINE 415

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P    G       +A                                        W    
Sbjct: 416 PKRGIGATSMAKLQAFADEN----------------------------------SWSLLQ 441

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH--- 569
           +  + ++A  +       I            +   LSI++ T+  +         E    
Sbjct: 442 AARNVQIANGIARRTRNAIEDFAKTIDALRKSAEFLSITELTETLLDKTGYRAALEQTRT 501

Query: 570 -RKLPNLWFEEEGKTLSSLFSKIIETGSCIKA----NAIEWIDIITRLIDGETVKPKIEK 624
                 L    E  T++  F +  +      A    + +  +D +  L          E+
Sbjct: 502 MEAEARLENINEFLTVTKQFDEQNDAEGTEVADENGDNVRLVDFLADLALVSDQDDVEEE 561

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
            S + ++    ++ L F  + L G+ EGV+P + A                  ++   + 
Sbjct: 562 PSAVTLMTLHAAKGLEFPVVFLVGMEEGVFPLSRA--------------ATDPDELEEER 607

Query: 685 AHDFEMANGT-RHLIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLK 732
              +       + L  T +             ASR++  +      D  + ++
Sbjct: 608 RLAYVGITRAQKKLYLTNAYSRMLYGRTQNNPASRFIGEISAEYLQDENEQVQ 660


>gi|260773437|ref|ZP_05882353.1| exodeoxyribonuclease V gamma chain [Vibrio metschnikovii CIP 69.14]
 gi|260612576|gb|EEX37779.1| exodeoxyribonuclease V gamma chain [Vibrio metschnikovii CIP 69.14]
          Length = 1149

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 111/925 (12%), Positives = 243/925 (26%), Gaps = 110/925 (11%)

Query: 49  IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
           I V +    Q L+    +  G  + +      L      +    +L         +    
Sbjct: 35  ILVQSSGMSQWLKMALAKELGVAANLE---FPLPASFIWEMFTQVLPEVPQRSAFNKEAM 91

Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-- 166
             +L RL+      L    +    +  L      +    LA+ +ADI D        W  
Sbjct: 92  TWKLMRLLPN----LLTHPQFTALQRYLEQDDDHSKLYQLAEKIADIFDGYLVYRPDWIA 147

Query: 167 -----EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                E +  L +E     W       +   +         +         + +    E 
Sbjct: 148 QWEAGEVVKELDDEH---PWQPIL--WQALYQ--DTVYQGQSHYHRGNLYQSFIEQLVEG 200

Query: 222 L--MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN------- 272
               +     + I G     P     +  +    +  ++      H    I +       
Sbjct: 201 ALDTRLLPKRLFIFGIASLPPRYLDALKALGEQIDVHLMFTNPCQHYWGDIRDRKTLAKL 260

Query: 273 ------------------TITEKSTNITSSNTTYSTHPQYSL-AKLLDFLDIKREDVKRL 313
                                        +N     H + S+   LL  +     D   L
Sbjct: 261 DSRQRKTLALQANAIHVEGQRSPLKGGIEANLVDEQHNEASVGNGLLASMGKLGRDNLYL 320

Query: 314 GN----------VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
            +          ++         +    L  +                I+     ++L  
Sbjct: 321 LSLLDCEELELFMAPARDSLLHHLQADILHLEEHQDDQQLDNSLHKQIIEVDDFSLSLHV 380

Query: 364 ADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINID 414
             +   E   +   L    D +     +   ++ AD N        +         I   
Sbjct: 381 CHSPMREVEVLHDQLLAMFDADPDLKPRDIIVMVADINAYSPAISAVFGNAPGERYIPYA 440

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALE 472
           IS       +   S    L++          +  L++ P  +AKF   E+  ++AK  +E
Sbjct: 441 ISDRTADQESPILSAFMHLVSLPESRCLASELLELLETPAMMAKFALNEQEFAQAKLWVE 500

Query: 473 LVALRGNKNSYDIMDLK----SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
              +R   N+      +         +   ++         S    E  ELA+   + + 
Sbjct: 501 ASGIRWGLNARTADQFELPPTEQNTWQFGVERMLLGYAMPPSAGLFEQGELALAPYNEVQ 560

Query: 529 QCITPLV--------TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
                L              +       SI  W  L    L +        + +L  E  
Sbjct: 561 GLNAELAGKLAHFIQRVSDYRERLANTQSIEQWRALLGDLLDDF------FVVDLQGELA 614

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS---STLFILGTLESR 637
            K++    +++ +  +  K +      II + +  + +  ++ +      +     +  R
Sbjct: 615 LKSIRDTLAQLKQQLADAKYDQALAPSIIIQYLRNKLLGIRVSQRFLAGQVNFCTLMPMR 674

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            + F T+ L G+N+GV+P+   K+ F     +     ++             + +  + L
Sbjct: 675 SIPFKTVCLLGMNDGVYPRTMPKDGFDLINGRPRAGDRSRRDDDRYL-FLEALLSAQKTL 733

Query: 698 IYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNLKKRGQCYLDWTRKLDYTTKQP 752
             +   R   +N   + S  +  L+     +     D      +        L  T    
Sbjct: 734 YISYVGRSIQDNTERVPSVLVAELMEYCQQNYCLQGDQSLSSDRSAERLVDALTTTHAMV 793

Query: 753 HYKRPK-PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
            +        P          +  +      +       L ++       +    +    
Sbjct: 794 PFSPDAFSTQPGSYAKEWLPAANRQGQSRGEFNRALSDYL-IEATYPLNLEL--VELQRF 850

Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
           +   +     +R+         +M+      F  + L          L  ++   FLE  
Sbjct: 851 WRLPVQYFFNRRLKVTFEAPQPVMEDA--EPFTLDGLES------YQLRDQLLDVFLEQP 902

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGI 896
               + IE++ V   A+  +     
Sbjct: 903 NSEHA-IERVLVEQRAQGKLPIGAF 926


>gi|285016934|ref|YP_003374645.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283472152|emb|CBA14659.1| probable atp-dependent dna helicase protein [Xanthomonas
           albilineans]
          Length = 733

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/574 (8%), Positives = 136/574 (23%), Gaps = 69/574 (12%)

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPAT 242
           L+ A   + ER             +       +        +     I++     +    
Sbjct: 171 LRNAYALYQERCDRAGLVDFAELLLRAHELLRDTPALLAYYRARFAEILVDEFQDTNAIQ 230

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
              +  +A   +   V    D       W     ++      +                 
Sbjct: 231 YAFVRVLAG--DSGRVFVVGDDDQAIYGWRGAKVENVQRFLKDFP--------------- 273

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                      G  +  +       +      +     N D +  ++         + L 
Sbjct: 274 -----------GAQTIRLEQNYRSSANILNAANAVIAHNPDRIGKQLWTDSGDGEPIDLY 322

Query: 363 EADNEREEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            A NE +EA  +    R  + +     ++A++      +R  +  L    +   +  G+ 
Sbjct: 323 AAYNEVDEARYVLERARQWVRDGGSYSEAAVLYRSNAQSRAFEEALLAEQVPYRVYGGMR 382

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
                      + L  +    D  A    V  P    G       R    ++        
Sbjct: 383 FFERAEIKDTLAYLRLVANRADDAAFERAVNTPARGIGDRTLDEVRRLARVQ-------- 434

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                       L      ++        +  +       + L++ ++  +  L   +  
Sbjct: 435 -----------SLSLWTAAQHAAQQGGELAARARNALGQFLGLIEQLVLEVADLSLPEQI 483

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
            +    +     W+K + + L +    ++            +  +   +           
Sbjct: 484 DHVLARSALRDHWSKESRSGLDSESRTDNLDELVSVASRFVRVDAEDDADEARQAMSELV 543

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
             + +  +                   + ++    ++ L F  + L G+ +         
Sbjct: 544 AFLAYAAL------EAGEGQARADEDGVQLMTLHSAKGLEFPLVFLVGMED--------- 588

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
             F S     +      E+ +                  +R +   +   + SR+L+ + 
Sbjct: 589 GLFPSARSLEESGRLEEERRLAYVGITRARHTLVLSYAESRRIHGQDNYNVPSRFLREIP 648

Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                +    ++      L   R   +   +   
Sbjct: 649 RELLHEVRPKVQVSRSASLGAPRNPGHPRIEAPA 682


>gi|225849851|ref|YP_002730085.1| putative UvrD/REP helicase [Persephonella marina EX-H1]
 gi|225645334|gb|ACO03520.1| putative UvrD/REP helicase [Persephonella marina EX-H1]
          Length = 1021

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 86/829 (10%), Positives = 237/829 (28%), Gaps = 126/829 (15%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
             + L   L + ++ +         L  L N           +FL+I  +        + 
Sbjct: 258 KVLELEDQLINTLEELRNNALYLNFLIILDNFD---------EFLQIFEEK-KRENHLIT 307

Query: 204 ASSPVGYQIALMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
            S  +     +     + L   +       I     +      ++  ++   +  +    
Sbjct: 308 YSDIILRSKEIFLRYPDLLEEYRERFKAFFIDEFQDTDQIQTDIIRMLSERSDLIVF--- 364

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            D       W +    +    + +    T            L++       L    N  +
Sbjct: 365 GDPKQCIYEWRSADLYNYISFTEDFEERT------------LNVCYRSGPSLVGFFNLFF 412

Query: 322 GRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREEAISIAI 376
             +  +++ +      ++ + +      L             V +++ +++  E +++A 
Sbjct: 413 VENDFLNRDYSNRKVKELYHLEEKYIPELFYSSEKSLDITDPVEIVKTESD-TEPVALAE 471

Query: 377 ALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            ++  L+   + +   ++   R+   R   EL +  I            ++    + ++L
Sbjct: 472 KIKQLLNSGYSPEDILVLFRSRSKTDRYIQELRKSNIPFISFLSSNFYNSVEVITVLNIL 531

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
             I    D + +  ++K P+  F              E+  +R +     I  LK   + 
Sbjct: 532 KLIQYPYDQLTLLKVLKSPVFSFSD-----------KEIYQIRNDLYIDRIPQLKE--IK 578

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
           R+   K++ ++     R+  +     + +          +   +  K        I+D  
Sbjct: 579 RLEEIKDSLNISQILDRVYRDL--PVLEIFSLYPDGKQKVANLEKLKF-------IADRL 629

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           +     L++              +    T              +  +  + ++    +I 
Sbjct: 630 EGENFQLRDFIQFLEDNRYKDEEDALITTDDRFV-------KVMTMHRSKGLEAKVVIIP 682

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
           G + +     +    +           +  I+  + +    +      F    ++  + L
Sbjct: 683 GLSERINRSTNGFFTV-----------EDEIMVRIRDDYNREVARTLNFDEEKVKRKIYL 731

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
                   +    +      +  +                 ++R+    G +     + R
Sbjct: 732 -------EEKRLLYVAFTRAKERLILFYSGSKGYMNEIETVIERI---NGKEVTVYTQDR 781

Query: 735 GQC-----------------YLDWTRKLDYTT----KQPHYKRPKPFPPLEAQPRTYSF- 772
                                  W+  +        ++    + +     E   +  S  
Sbjct: 782 KPVSFKLEIKMTEPSGISNNIRYWSDIIKRQDRNIMEKLKLLKDEEEGRKEEFEKAVSAK 841

Query: 773 --SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
             + +  LI++          ++      K+     + G + H I+         ++  E
Sbjct: 842 IFTTVSALIDEKNEKSVVEEFQISEDDSLKERDIPVETGIIVHKILEYFSFP---EDLKE 898

Query: 831 INHLMKQIIDSH--FEKENLPPHIDIIWRHLFHKISHSFLEHEE-KIQSSIEKIFVNIPA 887
             + ++++ +       E+    +  I      +    F+  +  K  SS   IF  +P 
Sbjct: 899 AENEIEELFERFSGLITEDNRDKVRDISLEKLKR----FIRSDAYKDISSSRIIFREMPF 954

Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936
              ++  G ++ G  D I   K+G + + DYKTG        ++   PQ
Sbjct: 955 --TLKEGGRYIEGKID-IVYEKNGVIYVGDYKTGRIKD----EEKYRPQ 996


>gi|289525651|emb|CBJ15132.1| DNA helicase [Chlamydia trachomatis Sweden2]
          Length = 634

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/575 (10%), Positives = 137/575 (23%), Gaps = 93/575 (16%)

Query: 156 IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
           I   +   +  EDL + +               +     + E+L   NA           
Sbjct: 142 ISQAKNRLQSPEDLDSKEYPDPT----------RTVYAEYQEQLRAANALDFDDLLFLTE 191

Query: 216 RAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
           +       +         ++I     +  A   +   +A   N   V+   D       W
Sbjct: 192 KLLRIPEVQQEYANHWKALLIDEYQDTNHAQYLITKRLAAAHNNIFVV--GDPDQSIYSW 249

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                 +              Q     L+  L+        +   +N +   +    +  
Sbjct: 250 RGANISNILNFE---------QDYSQALVVRLEENYRSCGTILEAANALIQNNSARLEKT 300

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKK 388
           L                          +      N+R+EA  +   +       D     
Sbjct: 301 LRSVKGPG-----------------DKIFCFTGKNDRDEAEQVLEEISNLHSYKDIPLSD 343

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
             ++      ++  +  L + G   +I  GI          + + L       D  A   
Sbjct: 344 ICILYRTNFQSQSFEAALLKRGYPYEIIGGISFYKRREIQDILAFLRLFSNNYDMAAFER 403

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            +                                     + +  L  +      T +P  
Sbjct: 404 TIS-------------------------------LKKCGIGATTLAALMNYAKTTDLPIL 432

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
           Q+     +K+   L         + L T+        GN  + ++   T+     + + +
Sbjct: 433 QACWDVLEKKSIRLTKKQQQGLFSYL-THFHQMEQLYGNCDLHEFINETIRITDYLSILK 491

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                    +   + L +              ++      +  L    +          L
Sbjct: 492 EDLETYEDRKNNLEQLLAETQIW-------GKSSENLPGFLEDLALKSSADETASSHDRL 544

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            ++    S+ L F  + L GL E + P   +K    +   +  L      +         
Sbjct: 545 KLMTIHNSKGLEFPVVFLVGLEENLLPHANSKGMHENIEEERRLCYVGITRAQEYLY--- 601

Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
              +  +      + R      + SR++  L    
Sbjct: 602 --LSRAKTRFLWGTERT----MVPSRFISELPKAL 630


>gi|229183444|ref|ZP_04310669.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BGSC 6E1]
 gi|228600028|gb|EEK57623.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BGSC 6E1]
          Length = 1166

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 98/899 (10%), Positives = 213/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 612

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 613  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 672

Query: 548  LSISDWTKL--------TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              + D  +             L+ +     R          G+    +    I     ++
Sbjct: 673  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 732

Query: 600  ANAIEWIDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL- 638
               +    +                              + K    S L I   ++  L 
Sbjct: 733  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 792

Query: 639  ---LNFDTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
               +    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 793  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 852

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 853  APSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 912

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      Q   K       +       + S   +                ++ +    R 
Sbjct: 913  EKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 972

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             +K       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 973  PIKTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL- 1026

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1027 -TFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1085

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1086 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKS 1143


>gi|118476726|ref|YP_893877.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bacillus
            thuringiensis str. Al Hakam]
 gi|225863093|ref|YP_002748471.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB102]
 gi|251764499|sp|A0RAX7|ADDA_BACAH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|118415951|gb|ABK84370.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bacillus
            thuringiensis str. Al Hakam]
 gi|225787430|gb|ACO27647.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB102]
          Length = 1241

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 98/899 (10%), Positives = 213/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKL--------TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              + D  +             L+ +     R          G+    +    I     ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 600  ANAIEWIDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL- 638
               +    +                              + K    S L I   ++  L 
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 639  ---LNFDTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
               +    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 927

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 928  APSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      Q   K       +       + S   +                ++ +    R 
Sbjct: 988  EKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             +K       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIKTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKS 1218


>gi|330807372|ref|YP_004351834.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375480|gb|AEA66830.1| Exodeoxyribonuclease V, gamma subunit [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1150

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 95/953 (9%), Positives = 244/953 (25%), Gaps = 97/953 (10%)

Query: 50  YVPTKRAIQELRSEFI------EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            V +    Q L+          +  G        ++  G  + + +    +L  +  P  
Sbjct: 44  LVQSNGIAQWLKLALAEDPEDDDSGGCGIAAAIDVQLPGSFMWQLYRT--VLGRDEIPAK 101

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           S + +     RL+ +    +     +      L+          L++ LAD+ D  +   
Sbjct: 102 SLLDKAPLTWRLMRLLPQLIEQPHFEPLRRF-LTQDTDLRKRYQLSERLADLFDQYQVYR 160

Query: 164 KKWEDLHALKN---EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
             W +  A                A      ++ W   L+++        +  + +   E
Sbjct: 161 ADWLEDWAEGRHQTRNVRGEIKPLAPANCWQAELWRALLLDVGEQGMAQSRAGVHQRYIE 220

Query: 221 H------LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI---- 270
                    KG    +I+ G +         ++ ++      + +     H    I    
Sbjct: 221 RINSLEVAPKGLPARVIVFGISSLPAQVLEALAGLSRFSQVLLCVHNPCRHHWADIVADK 280

Query: 271 ----WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                    +             T  Q++   L  +    R+ +  L +  +    RS+ 
Sbjct: 281 DLLRHQYKRQARKAGMPVVLDPQTLHQHAHPLLAAWGKQGRDYINLLDSYDDPNSYRSVF 340

Query: 327 IS--------------KSFLPPDTSDMRNTDILENKIPNIQ-KCFSDVALIEADNEREEA 371
                            S L  D  ++R  D      P +  +    +    A   + E 
Sbjct: 341 RDGRIDLFTDGTPTTLLSQLQDDILELRPLDETREHWPVVDTERDGSIRFHVAHGAQREV 400

Query: 372 ISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL-------TRFGINIDISAGIP 420
             +   L            +   ++  D +        +           I   ++    
Sbjct: 401 EILHDQLLAHFSADPTLRPRDIIVMVPDIDSYAPHIRAVFGQLDRSDPRFIPFTLTDQGQ 460

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF--PEKYLSRAKNALELVALRG 478
                    +  LL           I  L+  P  +  F   E  L      +E   +R 
Sbjct: 461 RGRDPLLIAVEHLLKLPDSRFPVSEILDLLDVPALRERFGIDEADLPTLHRWIEGAGIRW 520

Query: 479 NKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
             ++     L       ++     +        V    +    E  +    L   ++  +
Sbjct: 521 GMSAEHRAGLGLPAELEQNSWHFGLRRMLLGYAVGSSSAYEGIEPYDEIGGLDAALIGPL 580

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             L+      +      +        +  L  +      +  +    +      +     
Sbjct: 581 VALLDALEVAHQELTRPASPQQWGSRLQDLMQLFFQASNEHDDYLLAQLEDLRETWLETC 640

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
              G   +       +     +D   +  +    + +     +  R + F  + L G+N+
Sbjct: 641 ESVGLHDELPLTVVREAWLAGLDQGRLSQRFLAGA-VNFCTLMPMRAIPFKLVCLLGMND 699

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIP 709
           G +P+      F           ++  +          + +    L  +   R   +N  
Sbjct: 700 GDYPRAQPPLDFDLMGGDYRPGDRSRREDDRYL-LLEALLSAREKLYISWVGRSIRDNSE 758

Query: 710 TIASRWLQRLLVLGGTDF---------------FDNLKKRGQCYLDWTRKLDYTTKQPHY 754
             AS  + +L     + +                  L+     Y     +L     +   
Sbjct: 759 RPASVLIGQLRDHLASGWRLADDGKPLLDALTQEHPLQPFSARYFHQGDELFSYASEWRM 818

Query: 755 KRPKPFPPLEAQP-------RTYSFSEIKQLINDPYAVYARRILKL--DFIPHFKKDPDR 805
                    + +              +++  + +P   +  + LK+  + I     D + 
Sbjct: 819 LHDACDQTDKNRMLEPYVQEEPLGLGQLQDFLRNPVRHFFSQRLKVFFEAIEAPLADDEP 878

Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKIS 864
                L    +++ + +       + +  +            LP        +    +  
Sbjct: 879 FVLDALQRYSLSDSLLEAALVRLDQPDLALTAHAKRLQNSGLLPMAGFGECMQRELIEPL 938

Query: 865 HSFLEHEEKIQSSI-EKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSGFVD 914
              L+  +++ +         +P  + ++ + +   L+G    +     G V 
Sbjct: 939 PDLLQRYQQLLALWPTPSVSAVPVSLQLQGVNVEGWLSG----LHQRSDGAVL 987


>gi|188993614|ref|YP_001905624.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167735374|emb|CAP53588.1| DNA helicase II [Xanthomonas campestris pv. campestris]
          Length = 723

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 65/722 (9%), Positives = 163/722 (22%), Gaps = 120/722 (16%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E+R         G +      I +   +           +        + +
Sbjct: 55  VTFTNKAAGEMRHRTDLQLRNGSRGMW---IGTFHGLAHRLLRLHWQDARLPEGFQVMDS 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R++                                       I+  + E ++
Sbjct: 112 DDQLRLVKRVVQSLELDETKYPPKQMGWW---------------------INEQKDEGRR 150

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +      +    W             + ER             +       +     
Sbjct: 151 PQHIQ----PEPNDDWTEVRRQ---VYAAYQERCDRSGLLDFAELLLRAHELLRDTPALL 203

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A       V    D       W     ++  
Sbjct: 204 AHYRARFREILVDEFQDTNAIQYAFVRVLAG--ESGHVFVVGDDDQAIYGWRGAKVENVQ 261

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G  +  +       +      +     
Sbjct: 262 RFLKDFP--------------------------GAQTVRLEQNYRSSANILGAANAVIAH 295

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA  +    R  + +     + A++      
Sbjct: 296 NPDRIGKQLWTDSGDGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAQ 355

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L    +   +  G+            + L  +   +D  A    V  P     
Sbjct: 356 SRALEEALIAEQLPYRVYGGMRFFERAEIKDALAYLRMLTNRSDDAAFERAVNTP----- 410

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        +    LD +        +  W++ +    + 
Sbjct: 411 --------------------------TRGIGDRTLDEVRRLARANALSLWEAAMLCTQEN 444

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                  + L     LV     +          D   +     ++   +    L +    
Sbjct: 445 TLAARARNALATFLSLVGQLQAETGEMDLAERIDHVLMRSGLREHWAKESRGGLDSESRT 504

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E    L S+ S+             E +  +                  + ++    ++ 
Sbjct: 505 ENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMTLHSAKG 564

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + L GL +G++P   +              L+ + +   +    +      R  L
Sbjct: 565 LEFPIVFLVGLEDGLFPSARS--------------LEESGRLEEERRLAYVGITRARQKL 610

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
           +   +        +   + SR+L+ +      +    ++      L   R          
Sbjct: 611 VLCYAESRRIHGQDNYNVPSRFLREIPRDLLHEVRPKVQVSRTASLGAARGGPVHAVVDA 670

Query: 754 YK 755
             
Sbjct: 671 AP 672


>gi|282858133|ref|ZP_06267328.1| ATP-dependent DNA helicase PcrA [Pyramidobacter piscolens W5455]
 gi|282584055|gb|EFB89428.1| ATP-dependent DNA helicase PcrA [Pyramidobacter piscolens W5455]
          Length = 658

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 68/685 (9%), Positives = 171/685 (24%), Gaps = 119/685 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT--ADLLLSYNLNPPV 103
            V     T +A +E+     ++ G        I +             +LL     NP  
Sbjct: 57  RVLAVTFTNKAAREMSERVEKLLGGSLGGA-QICTFHSYGLNLLFRNRELLRDRGYNPSF 115

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               R   L   +     +L    +   P   L+      ++   A              
Sbjct: 116 VIYDRSDSLT-AVKHVMQELNIDTEKFAPSWALNRISEIKSSADPAS------------- 161

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----- 218
            ++                    F+    + +++ L E  A          +        
Sbjct: 162 VQFSAYDN---------------FMGDVYEKYSQALREQGAFDFDDLIAVPLALLKSDPE 206

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++        +  ++M  +    N  +V+   D       W      +
Sbjct: 207 LLERERERLQWVLVDEYQDVNGSQYQMMRLLVGGSNNLMVV--GDPDQSIYGWRGANYAT 264

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +              +  L+        + + SN++   +    +  L  +   
Sbjct: 265 IMNFERDFP---------NARVTLLEQNYRSTAMILDASNQLIRHNKNRREKNLRTN--- 312

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR-MSLDENKKKSALITADRN 397
                         ++    V +    +E+ EA ++A  +  ++   +    A++     
Sbjct: 313 --------------REEGQKVGVWYLRDEKAEAEALAREIVGLTAAYHYGDIAVLYRMNA 358

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
           L+R ++  L   GI   I  G           + + +       D +A+  +   P    
Sbjct: 359 LSRVLEQALIEAGIPYRIVRGTSFYDRKEVRDVVAFMRLAVNPWDLVALNRVGNLPARAL 418

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G            + +              +K+                        E +
Sbjct: 419 GPKSLEKL----GVWMRENAKGAAEDVWGTVKAKKGGLTGKAAEGAVQLADHMLTLLERQ 474

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
               L++D IL  +         +         +DW +      + + +           
Sbjct: 475 HSLPLVLDWILNGVGYENLLMKAE--------PADWEERVENVRELLSVAPEG------- 519

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                                        +++ ++     +  + E    + +     ++
Sbjct: 520 -------------------------ENLAEVLDQVSLYTDMDTQNETRDAVNLSSLHAAK 554

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + + G+ EG++P + + +       +  L      +   +        +G R  
Sbjct: 555 GLEFPVVFMTGMEEGIFPHSRSSDSQEELEEERRLCYVGMTRAEEKLY-----MSGARQR 609

Query: 698 IYTRSLRENNIPTIASRWLQRLLVL 722
                +         SR+L  L   
Sbjct: 610 RLFGVVLREG----FSRFLAELPDE 630


>gi|255311430|ref|ZP_05354000.1| DNA helicase [Chlamydia trachomatis 6276]
 gi|255317731|ref|ZP_05358977.1| DNA helicase [Chlamydia trachomatis 6276s]
          Length = 634

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/575 (10%), Positives = 137/575 (23%), Gaps = 93/575 (16%)

Query: 156 IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
           I   +   +  EDL + +               +     + E+L   NA           
Sbjct: 142 ISQAKNRLQSPEDLDSKEYPDPT----------RTVYAEYQEQLRAANALDFDDLLFLTE 191

Query: 216 RAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
           +       +         ++I     +  A   +   +A   N   V+   D       W
Sbjct: 192 KLLRTPEVQQEYANHWKALLIDEYQDTNHAQYLIAKRLAAAHNNIFVV--GDPDQSIYSW 249

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                 +              Q     L+  L+        +   +N +   +    +  
Sbjct: 250 RGANISNILNFE---------QDYSQALVVRLEENYRSCGTILEAANALIQNNSARLEKT 300

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKK 388
           L                          +      N+R+EA  +   +       D     
Sbjct: 301 LRSVKGPG-----------------DKIFCFTGKNDRDEAEQVLEEISNLHSYKDIPLSD 343

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
             ++      ++  +  L + G   +I  GI          + + L       D  A   
Sbjct: 344 ICILYRTNFQSQSFEAALLKRGYPYEIIGGISFYKRREIQDILAFLRLFSNNYDMAAFER 403

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            +                                     + +  L  +      T +P  
Sbjct: 404 TIS-------------------------------LKKCGIGATTLAALMNYAKTTALPIL 432

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
           Q+     +K+   L         + L T+        GN  + ++   T+     + + +
Sbjct: 433 QACWDVLEKKSIRLTKKQQQGLFSYL-THFHQMEQLYGNCDLHEFINETIRITDYLSILK 491

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                    +   + L +              ++      +  L    +          L
Sbjct: 492 EDPETYEDRKNNLEQLLAETQTW-------GKSSENLPGFLEDLALKSSADETASSHDRL 544

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            ++    S+ L F  + L GL E + P   +K    +   +  L      +         
Sbjct: 545 KLMTIHNSKGLEFPVVFLVGLEENLLPHANSKGMHENIEEERRLCYVGITRAQEYLY--- 601

Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
              +  +      + R      + SR++  L    
Sbjct: 602 --LSRAKTRFLWGTERT----MVPSRFISELPRAL 630


>gi|222112307|ref|YP_002554571.1| uvrd/rep helicase [Acidovorax ebreus TPSY]
 gi|221731751|gb|ACM34571.1| UvrD/REP helicase [Acidovorax ebreus TPSY]
          Length = 689

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 70/613 (11%), Positives = 163/613 (26%), Gaps = 81/613 (13%)

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY-----QIALMRAEA 219
            W+   AL   +      +A        + + ERL    +           ++     E 
Sbjct: 143 GWDARKALAMAQDDHERSIAL-----IMQRYEERLTAYQSVDFDDLIGMPMRLLRHHPEV 197

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +   G +++     +      L+  +      A      D       W   T  + 
Sbjct: 198 REKWQRLLGHVLVDEYQDTNATQYELLKYLVG--ERARFTAVGDDDQSIYGWRGATLDNL 255

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      PQ ++ KL                            S      +    
Sbjct: 256 KKLPQDF-----PQLNVIKL---------------------EQNYRSTSAILRAANHVIQ 289

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEA-ISIAIA--LRMSLDENK--KKSALITA 394
            N  +    + +       V +++ DNE  EA  ++A    LR + +     K  A++  
Sbjct: 290 PNPKLFPKTLFSELGEGEPVRVVDCDNEEHEAERAVARIQGLRAASNPPPAWKNFAILYR 349

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
             + A+  +  L +  I   +S G           L +        +D  A    V  P 
Sbjct: 350 ANHQAKPFEKALRKANIPYKVSGGTSFFDRAEIKDLCAWFRLWINNDDDPAFLRAVTSPR 409

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G                ++ G   +  +  +          +   T           
Sbjct: 410 RGVGHTTLAALGEFATQHKQSMFGALFNAMLPAVIPKRGLEGLLEFGRTVNDLEHRARHT 469

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
              E A   +   L+ +        +++     ++ + W+ +   C         +    
Sbjct: 470 HGHEAARAFLADWLKDMGYEQHLYDSED--SEKVAAARWSNVLEFCDWMAQRAGGQIDDT 527

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                               G+ ++A     +++   +    T+  + ++   + +    
Sbjct: 528 -------------------AGATVQAATKSLLEVAQTIALLSTISEREQEQDMVVLSTLH 568

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            S+ L +  +IL G+ EG+ P     +       Q  ++    ++   +    +      
Sbjct: 569 ASKGLEWPHVILAGVTEGMLPFKLDDD----DGRQQKVSDDILQRLQEERRLMYVGITRA 624

Query: 695 RHLIYTRSLRENNIPTI-----ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
           +  +     ++            SR++  + +   T          +   D  R+L    
Sbjct: 625 QRTLAVSWTKKRKKGREMVACQPSRFIAEMKLDAATAR--------ENPRDKLRQLREEF 676

Query: 750 KQPHYKRPKPFPP 762
            +     P P  P
Sbjct: 677 ARKAQAAPSPATP 689


>gi|16125775|ref|NP_420339.1| DNA helicase II [Caulobacter crescentus CB15]
 gi|13422909|gb|AAK23507.1| DNA helicase II [Caulobacter crescentus CB15]
          Length = 805

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 78/721 (10%), Positives = 179/721 (24%), Gaps = 116/721 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R     I G ++  L  + +   V  +                  
Sbjct: 89  EILAVTFTNKAAREMRERITHIIGPEAEGLRWLGTFHSVAAQI----------------- 131

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D  + L  +  L    +     W  + L+ IID  +     
Sbjct: 132 LRRHAELIGLKSNYTIIDTDDNERLLKQ--LIEAENIDAKRWTPRILSQIIDGWKNRGWT 189

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +   +  ++     ++        + + ERL  LNA       +  +     H    
Sbjct: 190 PDRVPTSEAGEFANGKGISL------YRQYQERLRILNACDFGDLLLHNISLFTGHPDVL 243

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     +  A    +  +A        +   D       W      +  
Sbjct: 244 DEFQQRFKYVMVDEYQDTNVAQYLWLRLLAQGRQNVCCV--GDDDQSIYGWRGAEVDNIL 301

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +      P   + +L          +     +     GR                 
Sbjct: 302 RFERDF-----PGAKVVRLECNYRSTEHILAAASGLITANKGR----------------- 339

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS--LDENKKKSALITADRNL 398
               L   +    K    V +    +   E+  IA  +  +        + A++      
Sbjct: 340 ----LGKTLWTPSKGGEKVKVSGVWDGEAESRLIADEIERAKKAGRKYSQMAILVRASFQ 395

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            R  +       I   +  G             + L  I   +D +A   +V  P    G
Sbjct: 396 MRAFEERFVLLQIPYKVVGGPRFFERAEIRDAHAYLRLIQSPDDDLAFERIVNTPKRGIG 455

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                       L  ++                                          E
Sbjct: 456 DTSVQKLLQIARLGGIST----------------------------------------VE 475

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            A  ++                        S+             +    +     L   
Sbjct: 476 AARQIITSDELPARTRTALSNFIRDLDRWRSLVGTAHHQRLLETVLEESGYTDALRLDKG 535

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
              +T      +++++          +++ ++ ++D      +      ++I+    ++ 
Sbjct: 536 PTSQTRLENLKELVQSMGAFD-TLEAYLEHVSLVMD----LDREATGDAVWIMTLHSAKG 590

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F  + L G  EGV+P   + +         D   K  E+    A      A     + 
Sbjct: 591 LEFPLVFLPGWEEGVFPSQRSMD---------DKGEKGLEEERRLAYVGITRAREEARIS 641

Query: 699 YTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
           +  + +        + SR++  L +       +     G   +  T    +        +
Sbjct: 642 FVANRQVYGRWTSQLPSRFVDELPIAHVDAASETGYYGGGPGMQSTAASRWDDPGTSAFQ 701

Query: 757 P 757
            
Sbjct: 702 A 702


>gi|217973461|ref|YP_002358212.1| exodeoxyribonuclease V subunit gamma [Shewanella baltica OS223]
 gi|217498596|gb|ACK46789.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS223]
          Length = 1274

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 87/800 (10%), Positives = 201/800 (25%), Gaps = 116/800 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVT----IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
             L  +       PL  A +     I V +      LR E  +  G  + +      L  
Sbjct: 11  EVLCAHLAAYLTQPLAFARLLSNEHILVQSPGMSTWLRLEIAKQNGIAAALE---FPLPS 67

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
               +   DLL     +   +      +L +L+              Y  + L    +  
Sbjct: 68  SFTWQLCHDLLPDVPKDNAFTKAAMTWKLMQLLPRMLQDDAFGPLRHYLGNTLDNRSTTN 127

Query: 144 NA------------------IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM------ 179
           +A                    L   +ADI D        W  + A +  ++        
Sbjct: 128 SADTSEHLNTSDMTADDIKLYQLCGRIADIFDQYLVYRPDW--ILAWEQNEHPESLTKPL 185

Query: 180 -WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--AEHLMKGTKGPIIIAGST 236
                    L  A   +    +  +          L+ A    +  +      + + G +
Sbjct: 186 NEDQRWQPILWRALIAFNRDELNQSHYHRANLHSDLIAALNNPDTSLAQLPQRLFVFGIS 245

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTA----------IWNTITEKSTNITSSNT 286
              P T  ++  +A   +  ++      H                    ++       + 
Sbjct: 246 SMAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAELWEDK 305

Query: 287 TYSTHPQYSL-----AKLLDFLDIKREDVKRLGNV---SNEMYGRSMVISKSFLPPDTSD 338
               +P  +       +LLD L     +    G+                 S L     D
Sbjct: 306 LEVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNDPHSHASMLHGVQYD 365

Query: 339 MRNTDILENKIPNIQ-------------KCFSDVALIEADNEREEAISIAIALRMSL--- 382
           +     L+  +                 +    + +    +   E  ++   L   L   
Sbjct: 366 ILEMQTLDRVLGPDAELYQNVENRRLLKRDDQSIRVKSCHSPLREVETLHDHLLELLSNH 425

Query: 383 -DENKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
            D   K   ++  D          +         I   I+       +   +   +LL  
Sbjct: 426 ADLTPKDIVVMMPDVAAYAPYIDAVFSAKQGLHYIPYAIADRGAAQESPLINSFLNLLGI 485

Query: 437 IFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDI--MDLKSLV 492
                    I ++++ P  L +F   +  L   +  L+   +R  ++        + +  
Sbjct: 486 NQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRDEQSRLKQGVPAFE 545

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELA------VLLVDHILQCITPLVTYKTNKNSTCG 546
            +  A       + +  S  +   ++              + + +  +            
Sbjct: 546 QNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQALGKLLNFIEVLDETAQILAL 605

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG----------- 595
               +         L      +  +   L  +E    +++L  +++  G           
Sbjct: 606 PQVGALRLAELTELLDAFYDTDEDEREQL--QEIRDAIAALEQELLSAGKPLDTSPLAFS 663

Query: 596 --------------SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
                         S +  +         + +    V  +     ++     +  R + F
Sbjct: 664 LDISPLAPLAQQSISGLSLSIEVLQQWFNQRLTESRVGQRYLAG-SVNFCTLMPMRSIPF 722

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
             + L G+N+GV+P+      F             + +   +      + +    L  + 
Sbjct: 723 KVVCLLGMNDGVYPRVQHPVGFDLMAHFGARKGDRSRRLDDRYLFLEALLSAREQLYISY 782

Query: 702 SLRE--NNIPTIASRWLQRL 719
             R   +N   IAS  +  L
Sbjct: 783 IGRSERDNSERIASMLVSEL 802


>gi|224823758|ref|ZP_03696867.1| exodeoxyribonuclease V, gamma subunit [Lutiella nitroferrum 2002]
 gi|224604213|gb|EEG10387.1| exodeoxyribonuclease V, gamma subunit [Lutiella nitroferrum 2002]
          Length = 1061

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 91/821 (11%), Positives = 195/821 (23%), Gaps = 58/821 (7%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
           T+ V ++   + L  E     G  + +            +           +   +  + 
Sbjct: 34  TVLVQSRGMGRWLTLELAGRAGIAANL------------DFVLPAAFAWRLMQAVLPGLP 81

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA--IWLAKNLADIIDIIETEEKK 165
           R    A  +L WR           P +PL   +    A    LA  +ADI D        
Sbjct: 82  RKSSFAPEVLQWRLLELLPTLHGAPFTPLVRYLEGGEAAGFELAGKIADIFDQYLVFRPD 141

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
           W                     L        +RL E   + P  +++ L+      L   
Sbjct: 142 WIRAWERGELLDLGEDEAWQAAL-------WQRLAE---ADPGRHRVRLLDDFLGGLRPE 191

Query: 226 T-KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                + + G     P    ++  +A   +  + L         A W  I +    +   
Sbjct: 192 HLPERVSLFGIASLAPMYLAMIKRLAALTDVCVFLLNPC----EAYWGDIVDARGQLKLF 247

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
               + H  + L   L        D      +             + L     D+     
Sbjct: 248 QQGMAAHDDHPLLASLGKQGRDFFDQIA-EEMPEGHPLFLEPHGDTLLARLQRDILTLTP 306

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLAR 400
                         + L    +   E   +   L      +        A++T D N   
Sbjct: 307 PGAAPAPPAPGDRSIELNAVHSPMRELEVLKDRLLARFAADPTLTPADVAVLTPDINAYA 366

Query: 401 RVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
                +         I   I+           +   ++L          A+  L+     
Sbjct: 367 PYIDAVFGQRDDAPNIPYTIADRRIEREEPLLATFAAVLQLADSRFGADAVLALLDCDAL 426

Query: 456 KFGFPEKY-----LSRAKNALELVALRGNKNSYDI---MDLKSLVLDRIATQKNNTHVPH 507
              F         L +      +   R   +   +    D        +      T +P 
Sbjct: 427 LARFGLADAEVPLLQQWVRESGIRWGRDAAHKAALGLPADPLYTWRWGLDRLLLGTVLPP 486

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
             +  +       +       Q    L  +    +   G                 +   
Sbjct: 487 ALAGDASPLFGGLLPAAGAEGQLAETLARFGQLFDVLDGCARAWAEPASPAVWRTRLQGA 546

Query: 568 EHRKLPNLWFEEEG-KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK-- 624
                      E     L    +++ E       +A   + ++   +             
Sbjct: 547 VEALFAVDEAGEAALTLLFDALAELAEDAQLAAFDAPVGLAVVRDWLTRRLTLSAPSGFL 606

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           +  +     +  R + F  L L G+N+G +P++     F           ++  ++  + 
Sbjct: 607 AGGVTFCAMVPMRSIPFRVLCLIGMNDGAYPRDERPVSFDLVARHPRRGDRSR-RFDDRY 665

Query: 685 AHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                + +    L  +   R    + P   S  +  LL          ++        + 
Sbjct: 666 LFLEALLSAREALYLSWVGRSVRTDEPLPPSPLVAELLDTLAKMAGCAVEVVQHPLQPFA 725

Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
           R        P     +P          +  +     +    A     +L+LD +  F + 
Sbjct: 726 RAAFDG-SDPRRHSFEPSYAAALAAPRHEPAPFAVALPGGDA----TVLRLDELLRFWRH 780

Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
           P R          +    +    +    +    ++ +    
Sbjct: 781 PARAWLADRLGVKLAGSAEDVPVREPFTVERDTRETLRREL 821


>gi|9630454|ref|NP_046887.1| gp69 [Mycobacterium phage D29]
 gi|6136238|sp|O64262|VG69_BPMD2 RecName: Full=Gene 69 protein; AltName: Full=Gp69
 gi|3172318|gb|AAC18511.1| gp69 [Mycobacterium phage D29]
          Length = 269

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 87/277 (31%), Gaps = 50/277 (18%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT--ELIKKRINKNT 828
            S S+I Q    P A    RI K+   P          +GT FH +    E+ +      T
Sbjct: 10   SVSQINQYTKCPMAYKLARIDKVWQRPAAWLP-----QGTAFHAVAEAVEVWESYGMPLT 64

Query: 829  PEINHLMKQI--IDSHFEKENLPPHIDIIWR-------HLFHKI-------SHSFLEH-- 870
             +    M +    +         P+ +               +           F     
Sbjct: 65   LDEAKDMFRWHYANDVGAFTEETPNFEWWTWSGPYNGQRDIERRYTVGLEQVEKFFAWRG 124

Query: 871  ----EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
                E  +        + +  ++ ++  GI + G+ D + ++  G + + DYKTG+ P  
Sbjct: 125  TPGQEIWVTPDGTP-AIELYFEIELD--GILVRGYIDAVVVV-DGELRVRDYKTGNQP-- 178

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
                   D QL + A A+       ++  K  + F +  K K        D  K++ + +
Sbjct: 179  -----GDDFQLGVYALAVAMT--YGVEAPKTGDYFMVGKKGKAPKPTKPYDLTKWTREAI 231

Query: 987  SEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
            +E+  +    I   + +                   +
Sbjct: 232  TEEFHRVEEGIAASMFDP--------LPEPDKCKFCD 260


>gi|296121114|ref|YP_003628892.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
 gi|296013454|gb|ADG66693.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
          Length = 845

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 87/786 (11%), Positives = 214/786 (27%), Gaps = 121/786 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           A +     T +A +E+      +   +      + +              +   L P  S
Sbjct: 52  AEILAITFTNKAAREMAERVEHLIPGRRV---AVSTFHKFCARILRQYGGV-VGLKPNFS 107

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            +     +       +  + +   D    SP  +                 I  ++ E  
Sbjct: 108 ILD----VKDQDAALKEAVKEEGFDPTHYSPSRIGWR--------------IGQLKNECI 149

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE---- 220
                     E+ G         +  A   + + L++ NA       + ++    E    
Sbjct: 150 SPGMFAQQAGERVGTHLDSV---VAKAYGRYQQILLDANAVDFDDLLLHVVTILKENPNL 206

Query: 221 -HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
              +      I++     +  A  +++S ++ +     +    D       W     ++ 
Sbjct: 207 RQSLDERYRFILVDEYQDTNQAQYQIVSALSQNEPN--LCATGDPDQSIYGWRGAQIENI 264

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      P+  + +L D      E +    ++      R     ++  P      
Sbjct: 265 LRFERDF-----PRVKMVRLEDNFRSTPEILAAADDLIRHNTQRKAKSLRTSNPSGLP-- 317

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADR 396
                              V + +  +  +EA S+A  +R  +   +      A+     
Sbjct: 318 -------------------VEIRQYADGFQEADSLAAEIRERVASGERQYSDFAIFYRVN 358

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
           +L+R ++  L R  +   I+ G+          L + L  I   +D  A   +V  P+  
Sbjct: 359 SLSRSIETALGRARVPFAITGGVAFYERTEVKDLIAYLRVIENPDDRPAFRRIVNTPV-- 416

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                                          L      R     +  H       L ++ 
Sbjct: 417 ---------------------RGIGKNSQEKLDRWASARNLNLWDAVHQIDASIGLPKKA 455

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
           +    L  + +            ++ +   +  I++  ++ V     +      +     
Sbjct: 456 EYSLKLFANLL------------DELARRSHGPIAELLEVIVERTGYLQNLSGLEPEEYA 503

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             +         ++  +       +  E+++  + + D +T+    E +  + ++    +
Sbjct: 504 NRKANVEELVASARQFDQDHVEGGSLSEFLETCSLVQDADTI---DESAGQVQLMTLHSA 560

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR- 695
           + L F  + L G+          ++  L              +   +    F      R 
Sbjct: 561 KGLEFPCVYLVGV----------EHGLLPHERSLREGDPL--QIEEERRLLFVGMTRARE 608

Query: 696 HLIYTR----SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            L  T     S     + TIAS++L  L  +   D+  +       +     ++   T  
Sbjct: 609 ELYLTWTRLRSTHGRLLSTIASQFLTEL-NVARHDYSTDDDTSFGDWSPQ--EMRRGTSG 665

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                       +A+  + + S+      D  A  A   +        ++D     R T 
Sbjct: 666 DSILAQMADWGEQARKESSNPSDKATSTEDDQADLAEPGVDSQLFASSEEDTQP--RATF 723

Query: 812 FHNIIT 817
              ++ 
Sbjct: 724 IDRVLE 729


>gi|114799862|ref|YP_760584.1| double-strand break repair helicase AddA [Hyphomonas neptunium ATCC
            15444]
 gi|114740036|gb|ABI78161.1| double-strand break repair helicase AddA [Hyphomonas neptunium ATCC
            15444]
          Length = 1168

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 72/844 (8%), Positives = 203/844 (24%), Gaps = 99/844 (11%)

Query: 161  TEEKKWEDLHALKNEKYGM-WWLLAADFLKI---ASKYWTERLVELNASSPVGYQIALMR 216
             E ++   +  L         +   A  ++I   A + + +      A            
Sbjct: 337  GEGRETARVRELVEVLQRAKAFARTAALIRIGLPALEAYRDEKARRGALDFDDLIQKTRA 396

Query: 217  AEAE--------HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG----------AIV 258
                        + + G+   +++  +  + P    L+  + +                +
Sbjct: 397  LLEADGMASWVLYKLDGSISHVLLDEAQDTSPDQWDLIRALTHEFGSGEGRDYSQDPRTM 456

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL-------------DFLDI 305
                D       +     +     +            +  L+                + 
Sbjct: 457  FIVGDEKQSIYSFQGAEPERLLTETRRLEERMAGAAGVEMLMSFRSVPEVLTYVDTVWNN 516

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                   +G +       ++  ++ +      ++   D                 +    
Sbjct: 517  SPPIDVGIGGMPPRTADNTLHTARRWNEHGAVEIWPIDPKIADDETDAWARPVDVVRATS 576

Query: 366  NEREEAISIAIALRM---------------SLDENKKKSALITADRNLARRVKLELTRFG 410
             + + A S+A A+R                +         +      L   +   L   G
Sbjct: 577  PKAKLATSVARAVRRMIDRGETVWDGKAQRATRPEDVLILVSKRQGGLFDSLINALKAEG 636

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            + +  +  + L+  +      +L+         + +A +++ P       ++YL    + 
Sbjct: 637  LPVAGADRLILTDFIGVQDCLNLMRFATLDLRDLTLAEILRGPFCGLVDDDQYLFSLASR 696

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                    ++               +    +  H+P +              L   + + 
Sbjct: 697  RAKGETLWSRVKASDDPDVQQAARFLQGLFDRAHLPPY------------EFLSHVLDRV 744

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK-TLSSLFS 589
                 T     N+  G  +      L    L +           +   E     +    +
Sbjct: 745  GEGGQTGWEQLNARLGMPARDPIEALLSRALSHDSAGPSSLQSFVASMEAENVEIKRDLA 804

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            +       +  +  + +     ++   T KPK    S L                     
Sbjct: 805  EAGREVRVMTVHGAKGLQAPIVILPDTTFKPKASAPSVLE------------------SA 846

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
            N  VW      +   S+  ++    K  E++       +      +  +      +    
Sbjct: 847  NAVVWSPRKDTDAEASKRARAIAEAKAREEHR---RLLYVALTRAQDRLIIAGHWQGQAG 903

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
               + + +           D L            K+    +             E   R 
Sbjct: 904  EDKTGYEKDSWYALCDAAMDLLPFEETDQGRRYGKVTTVAEADTDSSLGVGGLPEWALRP 963

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
                 + + ++ P ++   +   +      +++  R  RG   H ++  L +   +    
Sbjct: 964  APIDPVARKLSAPTSLLGPKTRIVAPFDAAREE--RLKRGRAIHALLQYLPELPEDGREA 1021

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
              +  + +         +L        +     +                +  + I    
Sbjct: 1022 AADAYLSR-------DADLTDGQRAEMKAAALGVMRDPALGAIFQPGGRAEAAI-IGKSK 1073

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKAG 947
             +    + + G  DR+ +     V + D+KT        E        Q++    A+   
Sbjct: 1074 DLPEGTV-INGRVDRLVVTPE-RVWVIDFKTDQPAPDRPEDVADTYVAQMAAY-WAVLKT 1130

Query: 948  SFSQ 951
            +F +
Sbjct: 1131 AFPE 1134


>gi|196037643|ref|ZP_03104954.1| ATP-dependent nuclease, subunit A [Bacillus cereus NVH0597-99]
 gi|196031885|gb|EDX70481.1| ATP-dependent nuclease, subunit A [Bacillus cereus NVH0597-99]
          Length = 1241

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 96/899 (10%), Positives = 213/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + + +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSTFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKL--------TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              + D  +             L+ +     R          G+    +    I     ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 600  ANAIEWIDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL- 638
               +    +                              + K    S L I   ++  L 
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 639  ---LNFDTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
               +    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 927

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 928  APSLYRHRDSEMLLELGQGSIPGEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      Q   K       +       + S   +                ++ +    R 
Sbjct: 988  EKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIQTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKS 1218


>gi|325696764|gb|EGD38652.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK160]
          Length = 762

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 69/627 (11%), Positives = 171/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                    K + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYKAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLIYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  ++     +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVEKIRDFASSQEMSLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRERLDDYTVTDLVEAVLEKTGYAASLAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  S  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPSD-ESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLIGMEENVFPLSRAS 587


>gi|108801294|ref|YP_641491.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS]
 gi|119870445|ref|YP_940397.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS]
 gi|108771713|gb|ABG10435.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS]
 gi|119696534|gb|ABL93607.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS]
          Length = 785

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 85/743 (11%), Positives = 200/743 (26%), Gaps = 112/743 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T +A  E+R   + + G ++  +  + +              L   LN   S
Sbjct: 68  GQVLAITFTNKAAAEMRERVVHLVGPRARSM-WVATFHSTCVRILRNQASLLPGLNSNFS 126

Query: 105 ----NIQRLLELA------RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
               +  R L L            +  +L            +    + A A   A +LA 
Sbjct: 127 IYDADDSRRLLLMIGKDMGLDTKKYSPRLLSNGISNLKNELIGPEQAAAEASEAADDLAR 186

Query: 155 II-DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
           II D+    +++    +AL  +      +         ++Y+  R               
Sbjct: 187 IIADVYAEYQRRLRAANALDFDDLIGETVAVLQRFPQIAQYYRRR--------------- 231

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG-------AIVLPGLDCHI 266
                           I++     +  A   L+  +             A +    D   
Sbjct: 232 -------------FRHILVDEYQDTNHAQYVLVRELVGGGAHDTGEVAPAELCVVGDADQ 278

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               +   T ++      +   +T            L+      + + N +N +  R+  
Sbjct: 279 SIYAFRGATIRNIEDFERDYPNATTIL---------LEQNYRSTQTILNAANSVIARNAG 329

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
             +  L  D+                      +    ADNE +EA  +A  +    D+  
Sbjct: 330 RREKRLWTDSGHGEL-----------------IVGYVADNEHDEARFVAQEIDRLADDGH 372

Query: 387 K--KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                A+     N +R ++    R GI   +  G+          + + L  +    D +
Sbjct: 373 SYNDFAVFYRTNNNSRALEEVFIRAGIPYKVVGGVRFYERREIRDIVAYLRVLDNPGDSV 432

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
           ++  ++  P    G   +            +                   + A +     
Sbjct: 433 SMRRILNTPRRGIGDRAEACVAVYAENTGASFND--------------ALQAAAEGKVPM 478

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
           +     +      ++   L   +   +  LV    ++      L  S+  +     L N+
Sbjct: 479 LNTRSEKCIASFVQMLDDLRGRLGDELGELVEAVLDRTGYRAELEASNDPQDLAR-LDNL 537

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                              L+    + ++          ++++ ++ + D + +      
Sbjct: 538 NELVSVAHEFSIDRANAAALAEDLDEPVDEDIPDTGVLAQFLERVSLVADADDIPEHGS- 596

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
              + ++    ++ L F  + + G  +G++P   A              L    +   + 
Sbjct: 597 -GVVTMMTLHTAKGLEFPVVFVTGWEDGMFPHMRA--------------LGDPNELSEER 641

Query: 685 AHDFEMANGTR-HLIYTRSLRENNIPTIA----SRWLQRLLVLGGTDFFDNLKKRGQCYL 739
              +      R  L  +R+   ++         SR+L+ +          + + R   + 
Sbjct: 642 RLAYVGITRARQRLYLSRAKVRSSWGQPMLNPESRFLREIPQELIDWRRTDPENRRPSFS 701

Query: 740 DW-TRKLDYTTKQPHYKRPKPFP 761
                    +       RP P  
Sbjct: 702 APSRMSSGSSGTSFGAPRPSPMR 724


>gi|291532504|emb|CBL05617.1| hypothetical protein MHY_05110 [Megamonas hypermegale ART12/1]
          Length = 569

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 66/247 (26%), Gaps = 33/247 (13%)

Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
             T +LR+       + + Q +     T                        K       
Sbjct: 126 HLTSALRQARDGEDLASFWQDVYNYLLTADVPLS-------TALQSIFAQAPKPVLPADL 178

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
                 + +    S +  +Q  N P+  +A   L L     F       D G L H I+ 
Sbjct: 179 ASKLYTKRKTLRGSVTRFEQFFNCPFKHFAHYALNLQERKEF--KFAAPDLGILLHAIMH 236

Query: 818 EL----------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII-WRHLFHKI-SH 865
           +            +   ++   +I   + + I    + E L              ++   
Sbjct: 237 QFGEILVKRQISWQDVTHEQCQQICKQIIKTIAPKLQNEILLSSNRYRHLLQRIEQLSID 296

Query: 866 SFLEH-EEKIQSSIEKIFVNIPAK----------MAIESIGIHLTGFADRIDLLKSGFVD 914
           S +   E    S      +                  ++  I + G  DRID     +  
Sbjct: 297 SLMRLVEFAKHSEFSPKALEQDFGANSSMPPLLFTDEDNHKIEIIGQIDRIDFN-DNYYL 355

Query: 915 ITDYKTG 921
           + DYK+G
Sbjct: 356 VIDYKSG 362


>gi|254418189|ref|ZP_05031913.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
 gi|196184366|gb|EDX79342.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
          Length = 785

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 81/733 (11%), Positives = 182/733 (24%), Gaps = 123/733 (16%)

Query: 2   HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             + P +      +   R +   L +       R           + +   T +A +E+R
Sbjct: 40  ATEGPVLVLAGAGTGKTRVLTTRLAHILATGRARP--------WELLVVTFTNKAAREMR 91

Query: 62  SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
                + G  +  L  + +   +  +                  ++R  EL  L   +  
Sbjct: 92  ERITHLIGPSAEGLRWLGTFHSIAAQI-----------------LRRHAELVGLKSSFTI 134

Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              D  + +  +  L    +     W  K+L+ +ID  +      E L     E +    
Sbjct: 135 LDTDDQERVLKQ--LLEAANIDTKRWTPKSLSGLIDHWKNRGWTPEKLPP--GEDFANGK 190

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGST 236
                        +  RL  LNA       +  +   ++H       +     I++    
Sbjct: 191 GQGL------YAAYQARLRSLNACDFGDLLLHNITILSKHADLADEYRRRFRYILVDEYQ 244

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
            +  A    +  +         +   D       W      +      +      P   +
Sbjct: 245 DTNVAQYLWLRLLTASTGNVCCV--GDDDQSIYGWRGAEVDNILRFERDF-----PGAKI 297

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
            KL          +     +      R                     L   +       
Sbjct: 298 VKLERNYRSTSHILGAASGLIAANRDR---------------------LGKTLWTEDDSG 336

Query: 357 SDVALIEADNEREEAISIAIALRMSLDEN-------KKKSALITADRNLARRVKLELTRF 409
             V +    +   EA  IA  +  +   +        K  A++       R  +  L   
Sbjct: 337 DKVRVRGVWDGEAEARLIADEIETARRPHAGEPGLKYKDMAILVRASFQMRAFEERLVML 396

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            I   +  G             + +  I   +D +A   +V  P                
Sbjct: 397 AIPYAVIGGPRFFERAEIRDAHAYMRLIQSEDDDLAFERIVNVP---------------- 440

Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                                    R     +   +     +           L++    
Sbjct: 441 ------------------------KRGIGDTSVQKILQLARQHDLSALTAVRGLINTDEL 476

Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                              ++S+ T      ++ V  +             G+T      
Sbjct: 477 QARTRTALSNFVRDLDRWRALSE-TTPHWEVMETVLEESGYTDMQKADRTSGQTRLDNLK 535

Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
           ++ ++    +        +   +               + I+    ++ L F  + L G 
Sbjct: 536 ELTQSMQQFETLQAYLEHVSLVMDLERATSDDPNGDGAVQIMTLHGAKGLEFPLVFLPGW 595

Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
            EGV+P   + +    + ++ +  L  A   + +A  D  ++     L+Y R   +    
Sbjct: 596 EEGVFPSQRSIDEKGEKGLEEERRL--AYVGVTRAKQDARISFAANRLVYGRWTSQ---- 649

Query: 710 TIASRWLQRLLVL 722
            + SR++  L + 
Sbjct: 650 -LPSRFVDELPIA 661


>gi|315187402|gb|EFU21158.1| hypothetical protein SpithDRAFT_0155 [Spirochaeta thermophila DSM
            6578]
          Length = 866

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 98/894 (10%), Positives = 202/894 (22%), Gaps = 120/894 (13%)

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP----AT 242
            FL   ++ W     +          +         L  G    +  AG   S        
Sbjct: 37   FLVTFARRWGGI--DAGRLYTWDRFVRDRFVGQGRLPAGPLHRVWAAGVLLSREEASSYL 94

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
              +   V         L  +   +         +   +   S         Y        
Sbjct: 95   GPVFGEVWERGGLEGFLASVLPEVLLLDLGGRGDAPWDRALSWLAEG----YRKVLEEAG 150

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            L    ++VKR          R  V+             +       +        D  ++
Sbjct: 151  LYEAEDEVKRAAREGRAPEARVAVVYPELYTAVGVPWEDLGASWLGLSLRACVPEDAPVL 210

Query: 363  EA-DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
                +   E  +  + +R +L E  ++  L+ ADR L   +  E    GI +    G  L
Sbjct: 211  VCYPDAVSEVRAALMEVREALKE-GEEVDLVVADRGLVGLLSEEADLLGIPLSPEVGRAL 269

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                   +L  L  A     DF ++  L                                
Sbjct: 270  REVSGVRVLFLLDEARRAGWDFDSVRDLFLAGDV-------------------------- 303

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                                           + E  E    + + +      + T     
Sbjct: 304  ------------PWREGWGEAVREAVEGKVWNCEAWERVGRVGEFLRDARGVMETESFGA 351

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHR---KLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                 +  +  W +      +       R      +L     G  +   +   IE     
Sbjct: 352  LREALDSWVRRWLEEWADDAERRAWGFARGLLVQLSLLEGRTGVRVKRPWEVWIEALKA- 410

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                               V         + +     S         + G +       +
Sbjct: 411  -------------------VPYVPGGGEGVPVYPYRVSAGAVGGRRWVLGASAEGVEVAS 451

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-------------RHLIYTRSLRE 705
                FL    +  L + T                                 +       E
Sbjct: 452  IPVEFLPEDERGRLGVSTRRFTESFVYAYLRSGARMSMHRVQGDMTHEVPSVFLLEGTVE 511

Query: 706  NNIPTIASRWLQRLLVLGGT-------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
                           V  G            +  +R      W  K          +  +
Sbjct: 512  ERGMVEDHPLAVEQRVWRGEVVEVRPVQAMVDGFRRAAEVRGWWGKGAEPLGGVARELLE 571

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                        S + ++         +  R+  L+         DR   G ++H ++ E
Sbjct: 572  RHGMRRGNELLLSPTVVQGFYECGLRAWYERVGGLEEASFRPGFVDRRSLGIVYHALLEE 631

Query: 819  LIKKRINKNTPE--INHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQ 875
            +    + +   E  +    +  +    +           I            +E  + + 
Sbjct: 632  VFSPYVGRLLSEVRLPGDFRARVKEVLDAHGAVVEEFIEIVADRVTARLEGVIERLKGLF 691

Query: 876  SS--IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-----KET 928
                 +   +    +  I   G+ L G  D +    +G   + D+K  + P      K  
Sbjct: 692  PGTGAKVGRIEGWERSPIA-EGLALRGRLDLLVEDGAGNPVLFDFKYTNVPSFPHSDKLE 750

Query: 929  AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND----------- 977
            A +  + Q       L A    + + R V +  Y+ +++   +                 
Sbjct: 751  AGRRFEMQ-----LLLYALLLKKQEDRLVEDALYVAVEKDDLLSLRKRLGNRGNKNTQVY 805

Query: 978  KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031
            +     + L E+  + L+EI   ++ GE  +     +         +  + RV 
Sbjct: 806  RDDEGLEGLFERLERTLVEIGQRMEGGEISYAEDRNVCTTGGGGCPFRRVCRVR 859


>gi|330826797|ref|YP_004390100.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
 gi|329312169|gb|AEB86584.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
          Length = 686

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 70/579 (12%), Positives = 156/579 (26%), Gaps = 75/579 (12%)

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ---IALMRAEAEH 221
            W+   AL   K      +A        + + ERL    +          + L+R   E 
Sbjct: 143 GWDARKALAIAKDDHERSIAL-----IMQRYEERLSAYQSVDFDDLIGMPMRLLRHHPEV 197

Query: 222 LMKGTK--GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
             K  +  G +++     +      L+  +      A      D       W   T  + 
Sbjct: 198 REKWQRLLGHVLVDEYQDTNATQYELLKYLVG--ERARFTAVGDDDQSIYGWRGATLDNL 255

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      PQ  + KL                            S      +    
Sbjct: 256 KKLPQDF-----PQLKVIKL---------------------EQNYRSTSAILRAANNVIG 289

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEA-ISIAIA--LRMSLDENK--KKSALITA 394
            N  +    + +       V +++ DNE  EA  ++A    LR + +     K  A++  
Sbjct: 290 LNPKLFPKTLFSELGEGEPVRVVDCDNEEHEAERAVARIQGLRAASNPPPAWKDFAILYR 349

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
             + A+  +  L +  I   +S G           L +        +D  A    V  P 
Sbjct: 350 ANHQAKPFEKALRKANIPYKVSGGTSFFDRAEIKDLCAWFRLWINNDDDPAFLRAVTSPR 409

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G                ++ G   +  +  +          +   T           
Sbjct: 410 RGVGHTTLGALGEFATQHKQSMFGALFNAMLPAVIPKRGLEGLLEFGRTINDLEHRARHT 469

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
              E A   +   L+ I         ++     ++ + W+ +   C         +    
Sbjct: 470 HGAENARAFLADWLKEIGYEQHLYDGED--SEKVAAARWSNVLEFCDWMAQRAGGQ---- 523

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                            +E G+ +++     +++   +    T+  + ++   + +    
Sbjct: 524 -----------------VEEGTGLQSETKSLLEVAQTIALLSTISEREQEQDMVVLSTLH 566

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            S+ L +  +IL G+ EG+ P     +       Q  +    A +   +    +      
Sbjct: 567 ASKGLEWPHVILAGVTEGMLPFKLDDD----EGRQQKVADDVAARLQEERRLMYVGITRA 622

Query: 695 RHLIYTRSLRENNIPTI-----ASRWLQRLLVLGGTDFF 728
           +  +     ++            SR++  + +   T   
Sbjct: 623 QRTLAVSWTKKRKKGREMVACQPSRFIAEMKLDAATARE 661


>gi|163849774|ref|YP_001637817.1| UvrD/REP helicase [Methylobacterium extorquens PA1]
 gi|163661379|gb|ABY28746.1| UvrD/REP helicase [Methylobacterium extorquens PA1]
          Length = 795

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 83/708 (11%), Positives = 185/708 (26%), Gaps = 115/708 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E++     + G     +P + +   +  +                  
Sbjct: 93  DILSVTFTNKAAREMKHRIGGLIGPAGEGMPWLGTFHAIGTKI----------------- 135

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +  +    +     W A++LA  ID  +     
Sbjct: 136 LRRHAELVGLKSDFTILGTDDQLRLMKQ--VISDQNIDEKRWPARSLAHTIDGWKNRGLS 193

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK- 224
            E +      +   +       L  A +     L  ++    +   + L R   + L   
Sbjct: 194 PEQVP---PGEAQSFAFGKGGQLYAAYQARLATLNAVDFGDLLLLCLKLWRENPDILANY 250

Query: 225 -GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                 I++     +  A    +  +A        +   D       W      +     
Sbjct: 251 QDRFRYILVDEYQDTNVAQYLWLRLLAQARKNVACV--GDDDQSIYGWRGAEVDNILRFE 308

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +                            G     +                   +N  
Sbjct: 309 HDFP--------------------------GATVVRLERNYRSTGHILAAASGLIAKNEG 342

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLARR 401
            L   +    +    V +  + +  EEA  +A ++           + A++       R 
Sbjct: 343 RLGKTLRTEDEAGEPVTVTGSWDSEEEARQVAESIESLQRRGHALSEIAVLVRISAQMRE 402

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           ++    + G+   +  G             + L       D +A   +   P    G   
Sbjct: 403 IEDRFVQVGLPYRVIGGPRFYERAEIRDALAYLRVTMNGADDLAFERIFNTPKRGLGDAT 462

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                A                     ++  +  +A  +             +E K  A 
Sbjct: 463 LQTLHAFA-------------------RADRIPLLAAARKLIET--------DELKPRAR 495

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            ++  +++  T  V     K       +I + +  T    ++   D   +L NL      
Sbjct: 496 SMLRGLVESFTRWVRLVETKPHPEVAQTILEESGYTEMWQKDRSADAAGRLENL------ 549

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
                 F + +E    + A       ++                  + ++    ++ L F
Sbjct: 550 ----KEFVRSMEEFPDMAAFLEHVSLVMEASEAEGA--------DRVSLMTLHAAKGLEF 597

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
           DT+ L G  +G++P   A +         +      E+    A      A     L +  
Sbjct: 598 DTVFLPGWEDGLFPNQRAID---------ESGRAGLEEERRLAHVGLTRARKRAKLSFAV 648

Query: 702 SLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
           + R +     TI SR++  L          ++ +    +     + D 
Sbjct: 649 NRRIHGLWSSTIPSRFIDEL-----PPQAVDVVEAPAHFSAGASRFDR 691


>gi|239908826|ref|YP_002955568.1| hypothetical protein DMR_41910 [Desulfovibrio magneticus RS-1]
 gi|239798693|dbj|BAH77682.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 265

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 78/274 (28%), Gaps = 37/274 (13%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR------ 823
             S S I   ++        +I K        +       GT  H II     +R      
Sbjct: 10   LSASSINSYLDCGLQFKFAKIDK-REPEAIAE---ALIFGTTIHKIIELYHHERSIGTRL 65

Query: 824  ------INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
                              +Q     F++        +  + L       F E        
Sbjct: 66   SVMDVTAAFEKCYTEAFEQQAGKIQFKEGKDFDSTLLEGKSLLATYVTQFPET------G 119

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936
            ++ I +       IE + I + G  D ++    G + I D+KT       +   K    Q
Sbjct: 120  LKVIGLEKAFSFQIEGVPIPIVGVMDMVEEDAGGNIVIVDHKTSSRSYSSDDIDK--SLQ 177

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            L++   A KA  +   +         I L+    +       ++Y      E  L+ + +
Sbjct: 178  LTIYGMAAKANGYGDRE---------IMLRFDCLVKTKKPKFEQYYTVRTEEDELRAMKK 228

Query: 997  IVTLLQNGEQP-FISHLRLSEKSNIQSEYDHLAR 1029
            I  + +   Q  FI     +        Y    R
Sbjct: 229  IQAVYRGIMQGVFI--PNDTSWKCKGCSYQQCCR 260


>gi|218296511|ref|ZP_03497239.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
 gi|218243053|gb|EED09585.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
          Length = 701

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 73/629 (11%), Positives = 166/629 (26%), Gaps = 108/629 (17%)

Query: 130 LYPESPLSLPISPANAIWLAKN---LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
              +   +L       + LA     +  ++D  + +    E L     E Y     L+  
Sbjct: 118 YDEDDQTALLKEVLKELGLAAKPGPIKSLLDRAKNQGVPPEHLLLELPEFYAG---LSRG 174

Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPA 241
            L+     + E L    A       +  ++   E       ++     I +     + P 
Sbjct: 175 RLQDVLHRYQEALRAQGALDFGDILLYALKLLEEDGEVLKRVRKRARFIHVDEYQDTNPV 234

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
             R    +A     A ++   D       +     ++    +       +P+  + +L  
Sbjct: 235 QYRFTRLLAGEE--ANLMAVGDPDQGIYSFRAADIRNILDFT-----QDYPKARVYRL-- 285

Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                                            +   ++N   LE  +  ++K    V L
Sbjct: 286 -------------------EDNYRSTEAILRFANAVIVKNALRLEKTLRPVKKGGEPVRL 326

Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
             A++ R+EA  +A  +   L     + A++      +R ++  L   GI   +  G+  
Sbjct: 327 FRAESARDEARFVAEEIAR-LGPPFDRVAVLYRTNAQSRLLEQALASRGIPARVVGGVGF 385

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                   L +         D +++  ++  P    G       +A            + 
Sbjct: 386 FERAEVKDLLAYARLSLNPLDAVSLKRVLNTPPRGIGPATVEKVQAIARE--------RG 437

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                 LK   L     +                 +    L+ + +     P   +  + 
Sbjct: 438 LPLFEALKVAALTLPRPEP---------------LRAFLALMEELMDLAFGPAEAFFRHL 482

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                                 +  D    L   + E+    L ++   +          
Sbjct: 483 L---------------------LATDYPAYLKEAYPEDAEDRLENVEELLRAAKEAESLM 521

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                D + ++      +   E    + ++    ++ L F  + L G+ EG+ P  ++  
Sbjct: 522 -----DFLDKVALTARAEEPAEAEGRVALMTLHNAKGLEFPVVFLVGVEEGLLPHRSS-- 574

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENN----IPTIASRWL 716
                       L T E    +    +         L  + +          P   SR+L
Sbjct: 575 ------------LSTQEGLEEERRLFYVGVTRAQERLYLSYAQEREIYGRLEPVRPSRFL 622

Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
           + +       +    +   +      R L
Sbjct: 623 EEVDEGLYEVYDPYRQSSRKPTPPPHRAL 651


>gi|34540779|ref|NP_905258.1| ATP-dependent DNA helicase UvrD/PcrA/Rep family [Porphyromonas
           gingivalis W83]
 gi|34397093|gb|AAQ66157.1| ATP-dependent DNA helicase UvrD/PcrA/Rep Family [Porphyromonas
           gingivalis W83]
          Length = 765

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 85/792 (10%), Positives = 199/792 (25%), Gaps = 128/792 (16%)

Query: 3   NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
           N  P +      S   R ++  LL      +  +   +P   A +     T +A +E++ 
Sbjct: 20  NDGPALVIAGAGSGKTRVLVYKLL------HLIHSGYDP---ARLMALTFTNKAAKEMKE 70

Query: 63  EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
                 G  +  +  + +   V       +               R   +       ++ 
Sbjct: 71  RVASEIGPAAYRI-QMGTFHSVFSRILRENATHL--------GYTRDFSIYD-TNDTKSL 120

Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH---ALKNEKYGM 179
           L  ++K +  +  +    +  + I +AK           +    E       L       
Sbjct: 121 LRHVMKRMNIDDKVYRLNAVQHRISMAK----------NQLISPESYAANKDLSRYDIDC 170

Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIA---LMRAEAEHLM--KGTKGPIIIAG 234
                A+        +T    + NA            L R   + L   +     ++I  
Sbjct: 171 RMPRMAE----IYSLYTILCKQNNAMDFDDLLFKINVLFRDFPDVLQTYRDRIDYLLIDE 226

Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
              +  A   +   +        V    D       +     ++    S +   S     
Sbjct: 227 YQDTNFAQYLIARQLMGEKG--KVFVVGDDAQSIYSFRGAKVENILGFSKSFPGS----- 279

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            L KL +     +  V    ++     GR      S                        
Sbjct: 280 KLFKLEENYRSTQSIVNAANSLIAHNEGRIPKQVFSNKQVGER----------------- 322

Query: 355 CFSDVALIEADNEREEAISIAIAL--RMSLDEN-KKKSALITADRNLARRVKLELTRFGI 411
               + L    +   EA ++A ++  R   +       A++      +R  +  L +  I
Sbjct: 323 ----IRLTGCLSGYLEAYTVADSIVERRMQEHCPYSDFAILYRTNAQSRVFEEALRKHNI 378

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              I  G+   +      + +    I   ND  A+  ++ +P    G             
Sbjct: 379 PFRIYGGLSFYSRKEIKDVLAYFRLIVNPNDDEALRRVINYPKRGIGDTTLSRLNEI--- 435

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                                          T        +  E ++    L     + +
Sbjct: 436 ------------------------------ATASSRSLWDVLSESQKGLPDLSATARRRL 465

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
              V+       +           +      +  +   + +  +  +E  K L +   + 
Sbjct: 466 GEFVSLIRELQESEYESLYEQAADVVKRSGISAEIFSDKSIEGISRQENLKELLNGIEEY 525

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
             + +  +         +  ++       +      + ++    ++ L F  + + G+ E
Sbjct: 526 GTSYAEERGEKPSLGTFLNEVVLLTDQDTEGVVGDYVTLMTVHAAKGLEFKHIFIVGMEE 585

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRH-LIYT----RSLRE 705
            ++P                  +   E+ + +    F +A    +     +    RS   
Sbjct: 586 NLFPSM----------------MNATEQGLEEERRLFYVAITRAKESCHISFAAERSRNG 629

Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD-WTRKLDYTTKQPHYKRPKPFPPLE 764
               +  SR+LQ L               G    D        +       +P+P     
Sbjct: 630 RTERSRPSRFLQELDDAYVERRVPQEMLGGHSQGDELPIHFSRSDAFERLPQPEPIRRRL 689

Query: 765 AQPRTYSFSEIK 776
            +  +    E +
Sbjct: 690 VRVGSSPVHEER 701


>gi|15605339|ref|NP_220125.1| DNA helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789347|ref|YP_328433.1| DNA helicase [Chlamydia trachomatis A/HAR-13]
 gi|237804958|ref|YP_002889112.1| DNA helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|3329053|gb|AAC68211.1| DNA Helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167877|gb|AAX50885.1| DNA helicase [Chlamydia trachomatis A/HAR-13]
 gi|231273258|emb|CAX10173.1| DNA helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436144|gb|ADH18318.1| DNA helicase [Chlamydia trachomatis G/9768]
 gi|296437072|gb|ADH19242.1| DNA helicase [Chlamydia trachomatis G/11222]
 gi|296438004|gb|ADH20165.1| DNA helicase [Chlamydia trachomatis G/11074]
 gi|297140506|gb|ADH97264.1| DNA helicase [Chlamydia trachomatis G/9301]
 gi|297748738|gb|ADI51284.1| PcrA [Chlamydia trachomatis D-EC]
 gi|297749618|gb|ADI52296.1| PcrA [Chlamydia trachomatis D-LC]
          Length = 634

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/575 (10%), Positives = 137/575 (23%), Gaps = 93/575 (16%)

Query: 156 IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
           I   +   +  EDL + +               +     + E+L   NA           
Sbjct: 142 ISQAKNRLQSPEDLDSKEYPDPT----------RTVYAEYQEQLRAANALDFDDLLFLTE 191

Query: 216 RAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
           +       +         ++I     +  A   +   +A   N   V+   D       W
Sbjct: 192 KLLRTPEVQQEYANHWKALLIDEYQDTNHAQYLIAKRLAAAHNNIFVV--GDPDQSIYSW 249

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                 +              Q     L+  L+        +   +N +   +    +  
Sbjct: 250 RGANISNILNFE---------QDYSQALVVRLEENYRSCGTILEAANALIQNNSARLEKT 300

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKK 388
           L                          +      N+R+EA  +   +       D     
Sbjct: 301 LRSVKGPG-----------------DKIFCFTGKNDRDEAEQVLEEISNLHSYKDIPLSD 343

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
             ++      ++  +  L + G   +I  GI          + + L       D  A   
Sbjct: 344 ICILYRTNFQSQSFEAALLKRGYPYEIIGGISFYKRREIQDILAFLRLFSNNYDMAAFER 403

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            +                                     + +  L  +      T +P  
Sbjct: 404 TIS-------------------------------LKKCGIGATTLAALMNYAKTTDLPIL 432

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
           Q+     +K+   L         + L T+        GN  + ++   T+     + + +
Sbjct: 433 QACWDVLEKKSIRLTKKQQQGLFSYL-THFHQMEQLYGNCDLHEFINETIRITDYLSILK 491

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                    +   + L +              ++      +  L    +          L
Sbjct: 492 EDPETYEDRKNNLEQLLAETQTW-------GKSSENLPGFLEDLALKSSADETASSHDRL 544

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            ++    S+ L F  + L GL E + P   +K    +   +  L      +         
Sbjct: 545 KLMTIHNSKGLEFPVVFLVGLEENLLPHANSKGMHENIEEERRLCYVGITRAQEYLY--- 601

Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
              +  +      + R      + SR++  L    
Sbjct: 602 --LSRAKTRFLWGTERT----MVPSRFISELPRAL 630


>gi|228919962|ref|ZP_04083316.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar huazhongensis BGSC 4BD1]
 gi|228839675|gb|EEM84962.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar huazhongensis BGSC 4BD1]
          Length = 1166

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 98/893 (10%), Positives = 216/893 (24%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEPSENGEMNPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V      A  +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESAGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++           +      
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDVDAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 858

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             R       L + +IP     +     V    G         + +         +     
Sbjct: 859  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 918

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 919  LQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRAPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------IHLTGFAD 903
                  K+   F     K   + + +   +P  M + +              I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|126433516|ref|YP_001069207.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Mycobacterium
           sp. JLS]
 gi|126233316|gb|ABN96716.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Mycobacterium
           sp. JLS]
          Length = 1080

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 91/886 (10%), Positives = 201/886 (22%), Gaps = 65/886 (7%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST-- 73
           PF                           A   + VP K   + L      + G+ S   
Sbjct: 2   PFHLHRAERTDLLADGLGALLSTPLADPFAEELVLVPAKGVERWLSQRLSHVLGRGSGDD 61

Query: 74  ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELAR--LILIWRNKLPDIIKDLY 131
            +    +  +              +   P S +  LLE+    L   W   L   +    
Sbjct: 62  GVCAGITFRNPRSLIADITGTRDDDPWAPDSLVWPLLEVIDDNLDQPWCTTLATHLGHF- 120

Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
            E      +  +    +A+ LA +      +         L  +          D L   
Sbjct: 121 -EHGEEQELRQSRRYAVARRLAGLFASYARQR------PGLLVDWLAGDPADLDDDLHWQ 173

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              W   +  + A  P       +    E      +  + + G T        L+  +A 
Sbjct: 174 PHLWRHLVDRVPADPPHIRHAKTVARLHESPSDLPER-LSLFGHTRLPSTEVELLDALAT 232

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           H +  + LP     + T +            +++         +L + L  L       +
Sbjct: 233 HHDLHLWLPHPSDDLWTTLEPHRGAVRRREDNTHREVGHPLLATLGRDLREL------QR 286

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
            L + +              L          + +      +      V +        + 
Sbjct: 287 SLPDDAQTDEYLGTADHPDTLLGWLQSDIAANAVRPDGRRLHDHDRSVQVHSCHGAARQI 346

Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARR----------VKLELTRFGINIDISA 417
             +   L   L ++     +   ++  D                V              A
Sbjct: 347 DVLREVLLGLLVDDPTLEPRDILVMCPDIEHYAPLIVAGFGLGDVIHGAHPAHRLRVKLA 406

Query: 418 GIPLSTT-LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP----------EKYLSR 466
              L+ T     +   LL           +  L + P  +  F           +     
Sbjct: 407 DRALTQTNPLLGVAAQLLALAGGRATATEVLNLAEAPSIRARFTFSDDDLDAIGDWVREA 466

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                     R       + +     LDR+      +   H     +    ++    V+ 
Sbjct: 467 NIRWGFDREHRHPYGVDFVQNTWRFGLDRVLAGVAMSDDSHAWLDTTLPLDDVGSDRVEL 526

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
             +    +   +    +  G   + +W     T +  +         + W   + +   +
Sbjct: 527 AGRLAEYVDRLQHCVENLSGTRPLHEWLDALRTGIDQLTSVPDD---DTWQTSQLEREFA 583

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
                            +   ++ R + G   +    ++ TL +   +  R +    + L
Sbjct: 584 DVLTQAGPRKDTLLRLPDVKALLDRHLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCL 642

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLR 704
            GL++                  +   +        +       A G     L+ T +  
Sbjct: 643 VGLDD---GAFPRLGVVDGDDALARDPMTGERDIRSEDRQLLLDAIGAATERLVVTYTGA 699

Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
                      +  + +L   D       R Q  ++   +              P  P  
Sbjct: 700 NEYSGQRKPPAVPLVELLDALDVTTEAPVREQILVEHPLQPFDVRNVTPGALGVPGTPFT 759

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-------PDRTDRGTLFHNIIT 817
                 + + +               L          D                    + 
Sbjct: 760 FDSTALTAATVASGDRAERPGLLTHPLPAPPEDDVALDDLIGFFKDPVRGFFRALDFTLP 819

Query: 818 ELIKKRINKNTPEINHLM-----KQIIDSHFEKENLPPHIDIIWRH 858
             +    +    EI+ L      ++++D      N        WR 
Sbjct: 820 WDVDAVEDAMPVEIDALAEWQVGERMLDDMLRGLNPEQAQQAEWRR 865


>gi|156743315|ref|YP_001433444.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
 gi|156234643|gb|ABU59426.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
          Length = 659

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 69/700 (9%), Positives = 165/700 (23%), Gaps = 112/700 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+R     + G     L    +   V        +           
Sbjct: 57  SHILALTFTNKAAREMRQRLRNLPGVSIRGL-TAGTFHSVCAALLREHITGRIG------ 109

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
              R      +           +          + + P         L   I   ++   
Sbjct: 110 ---RYTSDFTIYAEDEQAQLAALALDAARERPPVLLEPT-------ELLRHISRAKSRLL 159

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                     +           F+    + +   L   NA       +   R  AEH   
Sbjct: 160 TPRLAARFARDDL-------ERFVAGCYQRYQRSLEHANALDFDDLILLTHRLLAEHPDV 212

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANH----PNGAIVLPGLDCHIPTAIWNTIT 275
               +     ++I     + PA   L+  +        +   +    D       +    
Sbjct: 213 LDTCQARWRHVLIDEYQDTDPAQYALVELLTRPSPANGHVRSLFAVGDGMQAIYGFRNAD 272

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                    +              +  L       + + + +                  
Sbjct: 273 HTIIARFERDFP---------EARVIELATNYRSRQPILDAAYA----------VIRHSR 313

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALIT 393
                     + + P        + +++A + R+EA  +  ++   L      +  A++ 
Sbjct: 314 AVQPMALRATKPEPPRGAGHVPPLQIVDAKDARDEAERVTRSIVDLLRRGRRPRDIAILY 373

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
             R+++R  +  L    I   +                + L  +    D ++   +   P
Sbjct: 374 RSRHMSRTFESALRHVRIPYALRGATGFFERAVVRDTLAYLRVVNNPADNLSFNRIANVP 433

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                       +  +  L +    R  +       P   + LS
Sbjct: 434 -----------------------PRGLGAGALATLSAFAAQRGLSLSETLAHPEVLAALS 470

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            +  E A  L    ++    +       +     L    +       L+           
Sbjct: 471 PKAAESARQLAALFVRWRRLVDGGMPPDHVLADVLERIGYQAWLEQRLEP---------- 520

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                EE     +   ++    +   A        +  +    +     ++   + +   
Sbjct: 521 -----EELADARAHVQELANAAAEHTA----LNAFLQEVALLTSADDDDDERDRVQLSTI 571

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L +  + + GL EG  P               + +L T +    +    +     
Sbjct: 572 HAAKGLEWPIVFVAGLEEGTLP--------------HEHSLVTPDGVEEERRLCYVALTR 617

Query: 694 T-RHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNL 731
               L  + +  R    PT  SR+L  +   G      N+
Sbjct: 618 AGEQLYLSWAASRVRGKPTKPSRFLNEIEAYGRERAGRNV 657


>gi|308377258|ref|ZP_07441668.2| hypothetical protein TMHG_02416 [Mycobacterium tuberculosis
           SUMu008]
 gi|308348513|gb|EFP37364.1| hypothetical protein TMHG_02416 [Mycobacterium tuberculosis
           SUMu008]
          Length = 605

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 71/257 (27%), Gaps = 28/257 (10%)

Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                   D     D               P    P   S S + +L+ DP     R + 
Sbjct: 369 IDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGARQRLMC 428

Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
           +L   P           G  FH  + +     +  +  ++     + +         P  
Sbjct: 429 RLPKRPDPH-----AWLGDAFHAWVQQFYGAELLFDLGDLPGAADREV-------GDPEE 476

Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
           +  + R                  ++     V +P +M I      + G  D + +   G
Sbjct: 477 LAALQRA-----------FTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVFVDPDG 523

Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
              + D+KTG  P    A +    QL++   A    +        V   FY  ++    +
Sbjct: 524 GATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VRSGITV 580

Query: 972 DCITNDKKKYSADELSE 988
                      A  L++
Sbjct: 581 VPDELPAPGELAMLLTD 597


>gi|169335597|ref|ZP_02862790.1| hypothetical protein ANASTE_02012 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258335|gb|EDS72301.1| hypothetical protein ANASTE_02012 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1111

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 88/250 (35%), Gaps = 42/250 (16%)

Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN--T 828
           S S ++     P++ +    LK       K + ++ D G + H II+E  +K I+K    
Sbjct: 756 SISRLETYAKCPFSYFVSYALKPKERK--KNEINKPDIGNILHEIISEFSRKIIDKEIKP 813

Query: 829 PEINHLMKQ-----IIDSHFEKENLPPHIDIIWRHLFHKISHS-------FLEHEEKIQS 876
             I     +     I     +K +     +II    F              +  E    S
Sbjct: 814 ENIEKAEVEKISFDITSEIIDKYSSGKFKNIINSAYFKNKLLRNASYSLNTIISELNR-S 872

Query: 877 SIEKIFVNIPA----KMAIESIG-----IHLTGFADRIDLLKS--GFVD-ITDYKTGDNP 924
           + +            + AI+ +      + + G  DR+D  +   G    + DYKTG+  
Sbjct: 873 NFKITSTESKFSEENEGAIKIVTNKNHLMTIHGIIDRVDTYEDDKGRYVKVIDYKTGNA- 931

Query: 925 KKETAQK--LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
             +  +    I  QL +        + +  D +K A  FY ++        I N K   S
Sbjct: 932 TFDFIKSYYGISMQLPIYL-----TASTNNDDKKPAGAFYFKITP-----PIENIKNSSS 981

Query: 983 ADELSEKSLK 992
            +E+ E   +
Sbjct: 982 FEEIKEAVKE 991


>gi|163742590|ref|ZP_02149976.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Phaeobacter
            gallaeciensis 2.10]
 gi|161384175|gb|EDQ08558.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Phaeobacter
            gallaeciensis 2.10]
          Length = 1122

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 70/805 (8%), Positives = 187/805 (23%), Gaps = 118/805 (14%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHLMKGTKGPIIIAGSTG 237
            DF  +    +  R             +          + A   + + G    I++  +  
Sbjct: 339  DFAAVFLPEYDRRKQLRGWLDFDDLILKARQLLNDPAVAAWVLYRLDGGIDHILVDEAQD 398

Query: 238  SIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            + P    ++  +A                +    D       +      + +   +    
Sbjct: 399  TSPVQWDVVEKLAQEFTAGEGARSEVERTIFVVGDKKQSIYSFQGADPDAFDRMQAEFAD 458

Query: 289  S----------THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                          ++S       L +     K   +     + R  +            
Sbjct: 459  RLAETGSALQNAALEFSFRSSAAILGLVDLVFK---DSPGAGFHRDALHRAFKSELPGRV 515

Query: 339  MRNTDILENKIPNIQKCFSDVALIEA-DNEREEAISIAIALRMSLD-------------- 383
                 + +      +     V    A  +    A  IA A++  +D              
Sbjct: 516  DLWPVVDKVDTEEERDWTDPVDRPGARHHTVILAERIATAIKEMIDSKVTLPEDGPERGS 575

Query: 384  ------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                  +      L+     L   +        + I  +  + +   L    L +LL+ +
Sbjct: 576  FRRRPVQAGDFLILVQRRSELFSEIIRACKAARLPIAGADRLKIGAELAVKDLAALLSFL 635

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                D +++A  +K PL  +     +    +           ++          ++D + 
Sbjct: 636  ATPEDSLSLAAALKSPLFGWDEQTLFDLAHRREGGSYLWTALRDRAAEYPDTMAIIDDLR 695

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
            +Q +         R+         LL     +    +    +   +              
Sbjct: 696  SQTDFLRPYDLIERILTRHSGRQRLLGRLGPEAEDGVNALLSQALAYER----------- 744

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                             +W + +   +             +  +  + ++    ++    
Sbjct: 745  -------ADIPSLTGFLVWMQADDLEIKRQMGAAGNMIRVMSVHGSKGLEAPIVILPDTA 797

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
             +                             +     P     +  +  VMQ+       
Sbjct: 798  KRKPPRDDEI---------------------MRAEAGPMWKLPSAQMPDVMQAARETAQE 836

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS-RWLQRLLVLGGTDFFDNLKKRGQ 736
            +    +    +         +   +  E +    +  + ++R L   G + +D     G 
Sbjct: 837  KAQNERLRLLYVALTRAEKWLIVAAAGELSKDGDSWYQMVERALREAGANPYDTGYGEGL 896

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                           P      P  P   +     +      ++      A+ +      
Sbjct: 897  RLQHGDWDGLPFHADPPVVTSAPQLPEVFRQLPPPYQPPVPTLSPSELGGAKAL----PG 952

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
               + +     RG+  H+++  L     +      N L+    D+    + L     ++ 
Sbjct: 953  DLGQDEDIAKARGSRLHSLLEHLPPADQDTWPQLANALLAGHEDTA---DLLTEATHVLT 1009

Query: 857  RHLFHKISHSFLEHEEKIQSSIEK-IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
                  I                      +     ++     + G  DR+ +     V  
Sbjct: 1010 NPDLKAI--------------FTPDTLAEVAITADLDGR--RIHGVIDRLIVTPE-RVQA 1052

Query: 916  TDYKTGD--NPKKETAQKLIDPQLS 938
             D+K+        ET  + +  Q+ 
Sbjct: 1053 IDFKSNATVPTSVETCPEGLLRQMG 1077


>gi|319949274|ref|ZP_08023354.1| RecB family exonuclease [Dietzia cinnamea P4]
 gi|319437064|gb|EFV92104.1| RecB family exonuclease [Dietzia cinnamea P4]
          Length = 303

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 78/256 (30%), Gaps = 15/256 (5%)

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
           +    +          P  E +P   S S        P     R + ++           
Sbjct: 1   MTDPLEIGGIPAAGDVPLPERKPLALSASRASDYRQCPLLYRLRAVDRVPEPKTR----- 55

Query: 805 RTDRGTLFHNIITELIK-KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
               GT+ H+++ EL   ++  +       L+   ++  + +E+    + +  R  F   
Sbjct: 56  AQVLGTVVHSVLEELYGLEQSERAPQRAADLVPAAVERFYAEEDGATVVPLSDRADFQAQ 115

Query: 864 SHSFLEHE--EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
             + +      +               +   + G  L GF DR+D+  +G V + DYKTG
Sbjct: 116 VAALVAALYGVEDPQRFSPASCEQYL-VTATAAGTPLHGFLDRVDVAPTGEVRVVDYKTG 174

Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
             P      + +  Q+   A   +      I     A L  I LK    +    +     
Sbjct: 175 KPPHPRFQDQAM-FQMRFYALMYQR-----IHGVLPAQLKLIYLKNGSWLTFTPDHASLV 228

Query: 982 SADELSEKSLKNLIEI 997
             +   +     +   
Sbjct: 229 ETEASLDALWSEIERA 244


>gi|319764580|ref|YP_004128517.1| uvrd/rep helicase [Alicycliphilus denitrificans BC]
 gi|317119141|gb|ADV01630.1| UvrD/REP helicase [Alicycliphilus denitrificans BC]
          Length = 686

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 70/579 (12%), Positives = 156/579 (26%), Gaps = 75/579 (12%)

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ---IALMRAEAEH 221
            W+   AL   K      +A        + + ERL    +          + L+R   E 
Sbjct: 143 GWDARKALAMAKDDHERSIAL-----IMQRYEERLSAYQSVDFDDLIGMPMRLLRHHPEV 197

Query: 222 LMKGTK--GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
             K  +  G +++     +      L+  +      A      D       W   T  + 
Sbjct: 198 REKWQRLLGHVLVDEYQDTNATQYELLKYLVG--ERARFTAVGDDDQSIYGWRGATLDNL 255

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      PQ  + KL                            S      +    
Sbjct: 256 KKLPQDF-----PQLKVIKL---------------------EQNYRSTSAILRAANNVIG 289

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEA-ISIAIA--LRMSLDENK--KKSALITA 394
            N  +    + +       V +++ DNE  EA  ++A    LR + +     K  A++  
Sbjct: 290 PNPKLFPKTLFSELGEGEPVRVVDCDNEEHEAERAVARIQGLRAASNPPPAWKDFAILYR 349

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
             + A+  +  L +  I   +S G           L +        +D  A    V  P 
Sbjct: 350 ANHQAKPFEKALRKANIPYKVSGGTSFFDRAEIKDLCAWFRLWINNDDDPAFLRAVTSPR 409

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G                ++ G   +  +  +          +   T           
Sbjct: 410 RGVGHTTLGALGEFATQHKQSMFGALFNAMLPAVIPKRGLEGLLEFGRTINDLEHRARHT 469

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
              E A   +   L+ I         ++     ++ + W+ +   C         +    
Sbjct: 470 HGAENARAFLADWLKEIGYEQHLYDGED--SEKVAAARWSNVLEFCDWMAQRAGGQ---- 523

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                            +E G+ +++     +++   +    T+  + ++   + +    
Sbjct: 524 -----------------VEEGTGLQSETKSLLEVAQTIALLSTISEREQEQDMVVLSTLH 566

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            S+ L +  +IL G+ EG+ P     +       Q  +    A +   +    +      
Sbjct: 567 ASKGLEWPHVILAGVTEGMLPFKLDDD----EGRQQKVADDVAARLQEERRLMYVGITRA 622

Query: 695 RHLIYTRSLRENNIPTI-----ASRWLQRLLVLGGTDFF 728
           +  +     ++            SR++  + +   T   
Sbjct: 623 QRTLAVSWTKKRKKGREMVACQPSRFIAEMKLDAATARE 661


>gi|269126538|ref|YP_003299908.1| RecB family exonuclease-like protein [Thermomonospora curvata DSM
           43183]
 gi|268311496|gb|ACY97870.1| RecB family exonuclease-like protein [Thermomonospora curvata DSM
           43183]
          Length = 311

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 81/268 (30%), Gaps = 27/268 (10%)

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
           +                  +      S S     +  P     R I ++   P       
Sbjct: 1   MTTAAAPSGSPSDPAGTGSDGTTGALSPSRAGDFMTCPLLYRFRVIDQIPERPSP----- 55

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI------------ 852
              RGTL H ++  L      + T E    +          E                  
Sbjct: 56  AAVRGTLVHAVLERLYDLPAAERTVEAAVALLGPQWERLLAEEPDLAAMFAPEAADDPDA 115

Query: 853 -DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
               W     ++   +   E+  +  +E     +  +  +ES G+ L G+ DR+D+  +G
Sbjct: 116 DQEAWMERARQMVERYFTLEDPRR--LEPAERELYVETVLES-GLKLRGYIDRVDIAPTG 172

Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
            + I DYKTG  P+ +   + +  Q+   A  +       +       L  + L     +
Sbjct: 173 EIRIVDYKTGTAPRADFEARAL-FQMKFYALVVWR-----LYGAVPRMLQLMYLGNGEVL 226

Query: 972 DCITNDKKKYSADELSEKSLKNLIEIVT 999
             + ++ +  +     E   + ++  + 
Sbjct: 227 RYVPDEAELRATQRKVEALWQAIVRAMR 254


>gi|228926280|ref|ZP_04089354.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar pondicheriensis BGSC 4BA1]
 gi|228833377|gb|EEM78940.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar pondicheriensis BGSC 4BA1]
          Length = 1165

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 97/899 (10%), Positives = 218/899 (24%), Gaps = 143/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++              ++  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMG-EEVGEIDYDADAELK 441

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
            L     +  +       I   ++        E +  + EA  +A  ++  +D        
Sbjct: 442  LGASYPEGEDVAAELLCIQQTEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 501

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 502  KTDSMRPVKYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 561

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + + +    
Sbjct: 562  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSTFLKGAP 611

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 612  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 671

Query: 548  LSISDWTKL--------TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              + D  +             L+ +     R          G+    +    I     ++
Sbjct: 672  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 731

Query: 600  ANAIEWIDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL- 638
               +    +                              + K    S L I   ++  L 
Sbjct: 732  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 791

Query: 639  ---LNFDTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
               +    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 792  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 851

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 852  APSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 911

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      Q   K       +       + S   +                ++ +    R 
Sbjct: 912  EKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 971

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 972  PIQTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL- 1025

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1026 -TFEQAEEIAVEKVISFFDSDLGKRILAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1084

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1085 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKS 1142


>gi|229108699|ref|ZP_04238309.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-15]
 gi|228674729|gb|EEL29963.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-15]
          Length = 1166

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 97/893 (10%), Positives = 214/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAIVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KNDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLSDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 618

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
               K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 619  LHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 678

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 679  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 738

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 739  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 798

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 799  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 858

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             R       L + +IP     +     V    G         + +         +     
Sbjct: 859  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 918

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ------LINDPYAVYARRILKLDF 795
               +R +           Y          S +EIK+        ++ +    R  +K   
Sbjct: 919  LQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRAPIKTRP 978

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 979  RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1031

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------IHLTGFAD 903
                  K+   F     K   + + +   +P  M + +              I + G  D
Sbjct: 1032 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETILVQGVID 1091

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1092 CMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKS 1143


>gi|303233219|ref|ZP_07319892.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
 gi|302480804|gb|EFL43891.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
          Length = 1215

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 74/286 (25%), Gaps = 75/286 (26%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S S+I++ ++ PY+ +  R +          +    + GT  H I+  L +K      P
Sbjct: 841  LSASQIEEYLHCPYSWFYSRHI---PPARIDAEFSFPETGTFVHGILETLHRKLYEDAVP 897

Query: 830  E----------------------------INHLMKQIIDSHF---------------EKE 846
                                            L + +                    +  
Sbjct: 898  AQVFTKTSTPASMPYYSATARITEDTCALAQALFETLWQQRLHAQYRKRSGKELMRSQAY 957

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA---KMAIESIGIHLTGFAD 903
                  D       H     FL+ E +        F           +   G+++ G  D
Sbjct: 958  IPHTVQDKRLLDEVHDNVRGFLKFEAERLCGFSPTFFEWRFGKDDGLVRYAGMYVGGSID 1017

Query: 904  RIDLLKSGFVDITDYKTGDNPKKETAQKLIDP---------------------QLSLEAA 942
            R+D+ + G V I DYK   NP K      + P                     Q  + A 
Sbjct: 1018 RVDIDEKGRVLIIDYKY-KNPNKLDDYVPLSPAAANVIQETLQVSDIDLPRYVQTLMYAQ 1076

Query: 943  ALKAG----SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
             ++        +      +A   Y+  ++    D           +
Sbjct: 1077 IIRRSYANCRLANGSPITIAGALYVSAQRSSSRDYTIRGAILEDFE 1122


>gi|229095725|ref|ZP_04226704.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-29]
 gi|228687558|gb|EEL41457.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-29]
          Length = 1195

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 95/893 (10%), Positives = 215/893 (24%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E        P   
Sbjct: 292  DFQDMHPVLEKLVKLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENDEVKPSAV 351

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 352  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 411

Query: 279  TNITSSNTTYSTH-------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 412  FLGKYKRFTQEGSGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 471

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 472  GASYPIGEDVAAELLCIQQTEEEVLEGEEGTEVEKAQLEARLMAQRIKAMVDSGYEVYDR 531

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 532  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 591

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 592  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 647

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
              +K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 648  LHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 707

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 708  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 767

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 768  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 827

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 828  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 887

Query: 694  TRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
             R       L + +IP         W   ++        + +++  Q  L+  R+     
Sbjct: 888  HRDSEILLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 947

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARRILKLDF 795
             Q   K       +       + S   +                ++ +    R  +K   
Sbjct: 948  LQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRAPIKTRP 1007

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 1008 RFMEKKGLTYAERGTAVHTVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1060

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI------------ESIGIHLTGFAD 903
                  K+   F     K   + + +   +P  M +                I + G  D
Sbjct: 1061 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGNSGESILVQGVID 1120

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1121 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1172


>gi|227432451|ref|ZP_03914438.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351772|gb|EEJ42011.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 749

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/690 (8%), Positives = 167/690 (24%), Gaps = 119/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102
            +     T +A +E+R    ++   +      + +   +       D      L      
Sbjct: 56  RILAITFTNKAAREMRERIAQLVDPEIAREIWVSTFHAMAVRILRRDGER-IGLARNFTI 114

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +    +   + R+I                 +  +       A   AK   ++ +    E
Sbjct: 115 IDTSAQRTLMKRVINDLNLDTNQYDPRTILGTVSNAKNDMLTAKAYAKQAGNVYEETVAE 174

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH- 221
                                           +   L    +       ++ +    +  
Sbjct: 175 ----------------------------VYAAYQAELRRAQSVDFDDLIMSTIDLFKQAP 206

Query: 222 ----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     + +     +  A   +++ +A       V+   D       W      
Sbjct: 207 DVLERYQNQFEYLHVDEYQDTNDAQYTIVNLLAKRSRNLAVV--GDADQSIYGWRGANMN 264

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +                               +  +              +  
Sbjct: 265 NILNFEKDYPD--------------------------AHTVLLEQNYRSTQNILDAANAV 298

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL---RMSLDENKKKSALITA 394
              N + ++  +         +    A  ER+EA  +   +   R   +      A++  
Sbjct: 299 INNNNERIDKSLWTENGKGDKITYYRAQTERDEANFVLANIQKSRQEKNAAYSDFAVLYR 358

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L +  +   +  G           + S +N +    D  A   +V  P 
Sbjct: 359 TNAQSRGIEEALMKANMPYTMVGGHKFYERKEILDIMSYMNLMTNPADNAAFERVVNEP- 417

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                            + +  ++R+    N  ++ +  +  + 
Sbjct: 418 ------------------------------KRGIGATSINRLRDFANRMNLSYMGAIENI 447

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL-DEHRKLP 573
           E            L     ++     +        +++         Q +   ++     
Sbjct: 448 ELAPEITAKAASKLIQFAEMMHNLRQQTELLTVTELAELAMTKSVYRQKLAEKNDPESQG 507

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            L   EE  +++  F            + +   D ++       +    E    + ++  
Sbjct: 508 RLENLEEFLSVTKEFDSKYNPDDPESVDPM--TDFLSSTALMSDLDDFEEGDGAVTLMTL 565

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + L G+ EG++P +           ++ ++    E+    A      A  
Sbjct: 566 HAAKGLEFPVVFLVGMEEGIFPLS-----------RAMMDDNQLEEERRLAYVGITRAM- 613

Query: 694 TRHLIYTRSLRE----NNIPTIASRWLQRL 719
            + L  T +              SR++  +
Sbjct: 614 -KKLYLTNAFSRLLYGRTQANEPSRFIDEI 642


>gi|227500429|ref|ZP_03930491.1| ATP-dependent deoxyribonuclease subunit B [Anaerococcus tetradius
           ATCC 35098]
 gi|227217492|gb|EEI82811.1| ATP-dependent deoxyribonuclease subunit B [Anaerococcus tetradius
           ATCC 35098]
          Length = 1120

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 26/170 (15%)

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            SEI+     PY  +      L        D D  + G + H +  +L  K  N++   I
Sbjct: 772 VSEIENYSRCPYKYFVNY--GLRPKIEESYDVDHMEVGNIVHKLFEDLSHKLKNEDIKTI 829

Query: 832 NHL-MKQIIDSHF---EKENLPPHIDIIWRHLFHKISHSFLEH---------EEKIQSSI 878
           +   + +++  +F    +ENL        ++ F  I ++ L           ++  Q   
Sbjct: 830 SQEGLDELLVENFTKATEENLDKTRRKDAKNKF--ILNNVLTSTRRNSKKLLDQLSQGDF 887

Query: 879 EKIFVNIPAK-------MAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
           E   V            + ++     L G  DRID   + FV I DYKTG
Sbjct: 888 EIYAVEEDFGYGKDIPQVFVDDENY-LRGRIDRIDKAGN-FVRIIDYKTG 935


>gi|15840373|ref|NP_335410.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis CDC1551]
 gi|31792138|ref|NP_854631.1| ATP dependent DNA helicase UVRD1 [Mycobacterium bovis AF2122/97]
 gi|57116803|ref|YP_177772.1| ATP-dependent DNA helicase II UVRD1 [Mycobacterium tuberculosis
           H37Rv]
 gi|121636874|ref|YP_977097.1| putative ATP dependent DNA helicase uvrD1 [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148660728|ref|YP_001282251.1| putative ATP dependent DNA helicase UvrD1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148822158|ref|YP_001286912.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           F11]
 gi|167967811|ref|ZP_02550088.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           H37Ra]
 gi|224989345|ref|YP_002644032.1| putative ATP dependent dna helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800024|ref|YP_003033025.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           1435]
 gi|254231256|ref|ZP_04924583.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis C]
 gi|289555271|ref|ZP_06444481.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           605]
 gi|294996434|ref|ZP_06802125.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis 210]
 gi|297633471|ref|ZP_06951251.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN
           4207]
 gi|297730456|ref|ZP_06959574.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN
           R506]
 gi|306775079|ref|ZP_07413416.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu001]
 gi|306782007|ref|ZP_07420344.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu002]
 gi|306783628|ref|ZP_07421950.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu003]
 gi|306787992|ref|ZP_07426314.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu004]
 gi|306792329|ref|ZP_07430631.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu005]
 gi|306796727|ref|ZP_07435029.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu006]
 gi|306802615|ref|ZP_07439283.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu008]
 gi|306806794|ref|ZP_07443462.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu007]
 gi|306966993|ref|ZP_07479654.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu009]
 gi|306971186|ref|ZP_07483847.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu010]
 gi|307078913|ref|ZP_07488083.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu011]
 gi|307083471|ref|ZP_07492584.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu012]
 gi|313657784|ref|ZP_07814664.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN
           V2475]
 gi|61229774|sp|P0A5A3|PCRA_MYCTU RecName: Full=ATP-dependent DNA helicase pcrA
 gi|61229776|sp|P0A5A4|PCRA_MYCBO RecName: Full=ATP-dependent DNA helicase pcrA
 gi|13880539|gb|AAK45224.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis CDC1551]
 gi|31617726|emb|CAD93835.1| PROBABLE ATP DEPENDENT DNA HELICASE UVRD1 [Mycobacterium bovis
           AF2122/97]
 gi|41353625|emb|CAE55341.1| PROBABLE ATP-DEPENDENT DNA HELICASE II UVRD1 [Mycobacterium
           tuberculosis H37Rv]
 gi|121492521|emb|CAL70989.1| Probable ATP dependent dna helicase uvrD1 [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124600315|gb|EAY59325.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis C]
 gi|148504880|gb|ABQ72689.1| putative ATP dependent DNA helicase UvrD1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148720685|gb|ABR05310.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           F11]
 gi|224772458|dbj|BAH25264.1| putative ATP dependent dna helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321527|gb|ACT26130.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           1435]
 gi|289439903|gb|EFD22396.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           605]
 gi|308216426|gb|EFO75825.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu001]
 gi|308325244|gb|EFP14095.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu002]
 gi|308331626|gb|EFP20477.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu003]
 gi|308335437|gb|EFP24288.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu004]
 gi|308339243|gb|EFP28094.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu005]
 gi|308342888|gb|EFP31739.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu006]
 gi|308346806|gb|EFP35657.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu007]
 gi|308350722|gb|EFP39573.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu008]
 gi|308355383|gb|EFP44234.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu009]
 gi|308359322|gb|EFP48173.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu010]
 gi|308363229|gb|EFP52080.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu011]
 gi|308366886|gb|EFP55737.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu012]
 gi|323720660|gb|EGB29738.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           CDC1551A]
 gi|328459767|gb|AEB05190.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           4207]
          Length = 771

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 86/732 (11%), Positives = 186/732 (25%), Gaps = 97/732 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R   + + G+K+  +  + +              L   LN   S
Sbjct: 68  GQILAITFTNKAAAEMRERVVGLVGEKARYM-WVSTFHSTCVRILRNQAALIEGLNSNFS 126

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+ +    L   IK   P                   LA+ I  ++ E  
Sbjct: 127 IYDADDS-RRLLQMVGRDLGLDIKRYSPRL-----------------LANAISNLKNELI 168

Query: 165 KW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----- 218
              + L  L  +         A  +      +  RL   NA          +        
Sbjct: 169 DPHQALAGLTEDSDD-----LARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQ 223

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH------PNGAIVLPGLDCHIPTAIWN 272
                +     +++     +  A   L+  +         P G + +   D       + 
Sbjct: 224 IAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCV-VGDADQSIYAFR 282

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             T ++            +P      L       +  +    +V     GR         
Sbjct: 283 GATIRNIEDFE-----RDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRR-------- 329

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKS 389
                        E ++         +    ADNE +EA  +A    AL    +      
Sbjct: 330 -------------EKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDV 376

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A+     N +R ++  L R GI   +  G+          + + L  +    D +++  +
Sbjct: 377 AVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRI 436

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
           +  P    G   +                   +        +   +      NT      
Sbjct: 437 LNTPRRGIGDRAEACVAVYAEN----------TGVGFGDALVAAAQGKVPMLNTRAEKAI 486

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
           +   E   EL   L D + + +  ++     +     +    +  +L    L  +    H
Sbjct: 487 AGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARL--DNLNELVSVAH 544

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
               +                +      +    +    +    +  +  +     +  + 
Sbjct: 545 EFSTDRENAAA----------LGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVT 594

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
           ++    ++ L F  + + G  +G++P   A +       +  L      +   +      
Sbjct: 595 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITR--ARQRLYVS 652

Query: 690 MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
            A         RS     +    SR+L+ +            K      +    +     
Sbjct: 653 RA-------IVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSAR 705

Query: 750 KQPHYKRPKPFP 761
             P        P
Sbjct: 706 PSPTRSGASRRP 717


>gi|296113478|ref|YP_003627416.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis RH4]
 gi|295921172|gb|ADG61523.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis RH4]
 gi|326559400|gb|EGE09825.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 46P47B1]
 gi|326566037|gb|EGE16197.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 12P80B1]
 gi|326568114|gb|EGE18198.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC7]
 gi|326568531|gb|EGE18603.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC1]
 gi|326572434|gb|EGE22426.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC8]
 gi|326572519|gb|EGE22508.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis CO72]
          Length = 689

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 75/689 (10%), Positives = 177/689 (25%), Gaps = 108/689 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPV 103
            +T    T +A +E++S   +I   + +    + +      +    +L  +        +
Sbjct: 65  RITAVTFTNKAAREMKSRVQKILSHEKSRGLTVSTFHQFGLQFLRYELKHTSLKPNFSIL 124

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                   LA L+   R+ L    +       +       N +   K+ A+ +D      
Sbjct: 125 DADDCQRLLAELM--VRDNLSGAERRELVHEAIKKISDWKNDLIAPKDAAETLD------ 176

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              EDL                       + +   L   NA          +R   E   
Sbjct: 177 -DPEDLG-----------------FVHLYELYERNLRAYNAVDFDDLIAMPVRILRESHE 218

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +  A   L+  +        V+   D       W     ++
Sbjct: 219 VKDKWQNRIRYLLVDEYQDTNTAQYELIKLLVGRLGRFTVV--GDDDQSIYTWRGAKPEN 276

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
             +   +              +  L+        +   +N +   +  + +  L  D  D
Sbjct: 277 MALLKQDFPNLE---------VVKLEQNYRSTNHILGAANAVIANNEHMFEKSLWSDKGD 327

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITAD 395
                               + +I  +N+ +EA  +A  +      N +     A++   
Sbjct: 328 G-----------------EKIRVITCNNDFDEAERVAKEILTHRLRNNQTWDKYAVLYRS 370

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              AR ++ +L +  I   +S G           L   L  I   +D  A   ++  P  
Sbjct: 371 NFQARALEAQLRQLEIPYKLSGGTSFFARTEIKDLMGYLRIIINPDDDAAFLRVINTPKR 430

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G                                     +        V       +  
Sbjct: 431 GIGSVTLEKLGL--------------------FAQHCGTSLLGACTRAGVKDALGAKAGA 470

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             E     +++    +                          +  ++    +  ++   L
Sbjct: 471 IIESFGEFINYYTHQLHDNSDPMPLVRQMITE-------TGYIDYVKESSKNPQQEKGRL 523

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              E      +      +       +A+    ++  +++ +    + E ++ + ++    
Sbjct: 524 DNIEALYLSIAALINRADDEHDKTIDAVIRKMVLLDMLEQQ---QEEENTNKVNLMTLHA 580

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L FD + + G  E +       N  +S  +         E+           A    
Sbjct: 581 AKGLEFDYVYIIGCEEKL---LPHVNSIMSANI---------EEERRLMYVGITRAKSEL 628

Query: 696 HLIYTRSLRENN--IPTIASRWLQRLLVL 722
            L+  +  R          SR+L  L   
Sbjct: 629 TLLLCKQRRSGADFKAVTPSRFLDELPAE 657


>gi|152984109|ref|YP_001350188.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa PA7]
 gi|150959267|gb|ABR81292.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas aeruginosa PA7]
          Length = 1156

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 100/921 (10%), Positives = 226/921 (24%), Gaps = 72/921 (7%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG--- 82
           L    V   R  PL PL      I V +    Q L+    E          I  +L    
Sbjct: 11  LRDLAVSWMRRYPLAPLESER--ILVHSNGIAQWLKLALAEDPRADGGGGGIAAALEVQL 68

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                      +L     P VS + +     RL+ +    L            L+     
Sbjct: 69  PAQFLWQAYRAVLGRESIPEVSELDKAPLTWRLMRLLPGLLERPEFHALQRF-LADDADL 127

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLAADFLKIASKYWTERL 199
                LA+ LAD+ D  +     W D  +   ++               +  ++ W   L
Sbjct: 128 RKRHQLAERLADLFDQYQVYRGDWLDDWSQGRDQLRTANGKARPLDASERWQAELWRALL 187

Query: 200 VELNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANHP 253
            ++ A S    +  + R   E L       +     +++ G +     T   ++ +A   
Sbjct: 188 ADVGADSLARSRSGVHRRFIEALRSAEVAPRALPRRVVVFGISSMPAQTLEALAALARFS 247

Query: 254 NGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
              + +     H    I             ++    T +        Q++   L  +   
Sbjct: 248 QVLLCVHNPCRHHWADIVADKDLLRHEYRRQQRRAGTPAGLDEDLQHQHAQPLLAAWGKQ 307

Query: 306 KREDVKRLGNVSNEMYGRS------------------MVISKSFLPPDTSDMRNTDILEN 347
            R+ +  L +  +    R+                    +               +   +
Sbjct: 308 GRDYINLLDSYDDPDSYRTLFGEVNGGRIDLFSEEPPASLLGQLQDDILELRPLAETRRH 367

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVK 403
             P   +  + +    A + + E   +   L            +   ++  D N      
Sbjct: 368 WPPVSPQHDASIRFQVAHSAQREVEILHDQLLARFNADPRLKPRDVIVMVPDINAYAPHI 427

Query: 404 LEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +        +  I   ++             L  LL           I  L+  P  +
Sbjct: 428 EAVFGQVPRDDQRFIPYTLADQGQRGREPLLIALEHLLKLPESRFAVSEILDLLDVPALR 487

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLK---------SLVLDRIATQKNNTHVPH 507
             F       A     +               +         +     +        V  
Sbjct: 488 RRFGVDEAELAILHRWIEGAGVRWGLDAAQRERLGLPPGLEGNSWRFGLRRMLLGYAVGE 547

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                  +  +    L   +   +  L+       +     +        +  L  V  +
Sbjct: 548 GAPLQGIQPYDEVGGLDAALAGPLAVLLERLEVAYAELAEPATPVQWGERLQALLTVFFE 607

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
            H +   L   +  + L                      +     +D   +  +    + 
Sbjct: 608 AHDERDELLLTQLLQLLERWQEHCACAAFAEPLPLSVVREAWLGSLDQGGLNQRFLAGA- 666

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
           +     +  R + F  + L G+N+G +P+  A   F           ++  +        
Sbjct: 667 VSFCTLMPMRAIPFRLVCLLGMNDGDYPRQQAPLDFDLMRNDYRPGDRSRREDDRYL-LL 725

Query: 688 FEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
             + +    L  +   R   +N     S  + +L       +  +    G   L    + 
Sbjct: 726 EALLSAREQLYVSWVGRSIRDNEERPPSVLIGQLRDHLAAGWRLSPDADGDALLRALTQ- 784

Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                QP  +R     P +     ++++   + ++      A            +     
Sbjct: 785 -EHPLQPFSRRYFQAAPAQGVDGLFTYAREWREVHREDEAAAAEAEAPLPPLVLEGALGL 843

Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS 864
                   N +    ++R+     +    +    +  FE + L              +  
Sbjct: 844 RPLAEFLANPVNAFFQQRLKVRFDD--EQLTGNDEEPFELDALDNWKLQFELTERLKRWV 901

Query: 865 HSFLEHEEKIQSSIEKIFVNI 885
              L+ + +   +  +  V  
Sbjct: 902 E--LDWDAERLPAQLQAQVER 920


>gi|308173040|ref|YP_003919745.1| ATP-dependent deoxyribonuclease subunit A [Bacillus amyloliquefaciens
            DSM 7]
 gi|307605904|emb|CBI42275.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus
            amyloliquefaciens DSM 7]
          Length = 1235

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 115/890 (12%), Positives = 240/890 (26%), Gaps = 130/890 (14%)

Query: 167  EDLHALKNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            E L  L       +     +           Y    L         G +   + +EA   
Sbjct: 344  ETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAR---DEEGRR---VPSEAAVY 397

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +     +++     +      ++  V + +     +    D       +          
Sbjct: 398  YQDQFHEVLVDEYQDTNLVQESILQLVKSGNEESGNLFMVGDVKQSIYRFRLAEPLLFLG 457

Query: 282  TSSNTT--YSTHPQ-----YSLAKLLDFLDIKREDVKRL-GNVSNEMYGRSMVISKSFLP 333
                 T       Q      +     D LD      K+L G    E+        K    
Sbjct: 458  KYKRFTEDGEGAGQKIDLNQNFRSRSDILDSTNFLFKQLMGGKIGEVDYDEQAALKLGAS 517

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM------------- 380
               +D   T++L     +      D    E  +   EA +IA  +R              
Sbjct: 518  YPPNDAAKTELLLIDSADDADSPEDAEDFETVHW--EAKAIAAEIRKLVSSPFKVYDGKT 575

Query: 381  --SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                +   +   ++      A ++  EL   GI +  +        +  +   S+L  I 
Sbjct: 576  KTHRNIQYRDIVILLRSMPWAPQLMEELKNQGIPVYANLTSGYFEAVEVAAALSVLKVID 635

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRA-------KNALELVALRGNKNSYDIMDLK-- 489
                 + +A++++ P+      E  L R          AL+     G+++      L+  
Sbjct: 636  NPYQDIPLASVLRSPIVGCDENELALIRLEKKKAPFYEALKAYIANGDRHDDLYQKLRIF 695

Query: 490  --SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV----DHILQCITPLVTYKTNKNS 543
              SL   R  +  ++     W+        + A  +           +           +
Sbjct: 696  YDSLQKWRSFSTNHSVSELIWEVYRDTGYFDYAGGMPGGKQRQANLRVLYDRARSYEATA 755

Query: 544  TCGNLSISDWTKLTVTCLQNVCLD----EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              G      + +       ++       E   +  L      K L          G    
Sbjct: 756  FRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFTAGLGRSFN 815

Query: 600  ANAIEWIDIITRLIDGET------VKPKIEKSSTLFILGTLESRLL----NFDTLILGGL 649
               +    ++ + +   T      ++        + +   +   LL        + L   
Sbjct: 816  MMDLNKPYLLDKELGFGTKYIHPELRISYPTLPLVAMKKKMRRELLSEELRVLYVALTRA 875

Query: 650  NEG------VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE--MANGTRHLIYTR 701
             E          +      + ++  ++D  L   ++Y   +  DF          +   R
Sbjct: 876  KEKLFLVGSCKNREKQLAKWQAQADRADWLLSEFDRYQASSYLDFIGPALIRHSDMEAHR 935

Query: 702  S---LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP------ 752
            +   L   +I    +R+  R+L        D+ ++R +      + + +    P      
Sbjct: 936  APGLLAPEDIAHDPARFHIRMLQQS-ELLEDSPEERAEEKSKRLKAIQHGEPIPDSFSFD 994

Query: 753  -----HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL--------DFIPHF 799
                   +   P+  L A     S SE+K+          R ++K               
Sbjct: 995  DQARRLLEWEYPYRKLTAIRTKQSVSELKRKQEYEDEYSGRSLIKPSGDTLLYKRPGFMM 1054

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
            KK     ++GT  H ++  +    +     E    ++ + +     E     ID      
Sbjct: 1055 KKGLTAAEKGTAMHTVMQHIPLTHV-PTAEEAERTVRMLYEKELLTEEQQDAID------ 1107

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGFADRIDLL 908
              ++   F     K      +I   +P  MA+               + + G  D +   
Sbjct: 1108 IDEVIQFFGTEIGKDLVGALRIDREVPFSMALPASEVYKDAETAGEPLLVQGIIDCLYET 1167

Query: 909  KSGFVDITDYKT------------GDNPKKETAQKLIDPQLSLEAAALKA 946
              G + + DYKT            G  P     QK  + Q+ L   A++ 
Sbjct: 1168 ADG-LYLLDYKTDRIEGKFRNGFEGAAP---ILQKRYETQIELYTKAVEQ 1213


>gi|320354829|ref|YP_004196168.1| exodeoxyribonuclease V subunit gamma [Desulfobulbus propionicus DSM
           2032]
 gi|320123331|gb|ADW18877.1| exodeoxyribonuclease V, gamma subunit [Desulfobulbus propionicus
           DSM 2032]
          Length = 1071

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 93/879 (10%), Positives = 197/879 (22%), Gaps = 95/879 (10%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +   L   TL+     DPL P ++A     V  +   Q +  +    TG  + +   
Sbjct: 10  LETLFAQLC--TLMREPPADPLTPEIIA-----VHNQGMAQWVHRQLALATGIAANL--R 60

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
               G     +   +LL       P  ++ R   L   +      L          + L 
Sbjct: 61  FPLPG-----RLVWELLHRLTDEKPEEDLFRPSVLRWRVAALLPSLDTRPPFHELAAYLR 115

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                  A  LA  +++++D         + L   +  +    W             W  
Sbjct: 116 DDADGIKAYQLAGRISEVLDQYLVFR--PDLLARWERGED-GHWQAVL---------WRA 163

Query: 198 RLVELNASSPVGY--QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
            LV+           +   +              + + G     P    +++ ++NH   
Sbjct: 164 -LVKEGVPHRARLGERFQALLRGGAVAEGILPERLHLFGLNALAPVYLDILAGISNHSEV 222

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK---- 311
            +       H    + +         +      S         LL  L    +D      
Sbjct: 223 HLFHLSPCRHFWGDLVSARQLAGMRASGREEVGSATYHEQGHPLLVSLGGTGQDFFCQLL 282

Query: 312 -RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
            R    ++           + L  D  D+ +   +  +   +      +      +   E
Sbjct: 283 DRETQENDLYQENGARHLLAALQDDLLDLHDRSAVGAERYVLGLEDRSLQFHRCFSPLRE 342

Query: 371 AISIAIALRMSLDENKKKSA--LITADRNLARR-------VKLELTRFGINIDISAGIPL 421
              +   L          +   ++ +  ++ R                 I   I+     
Sbjct: 343 IQVLHDRLLDLFQTIPDLAPDDILVSAPDIQRYADAVAGVFGAAGQERHIPWSIADRSLA 402

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS----------RAKNAL 471
                      LL  +        +  L + P     F                      
Sbjct: 403 EEQPLIRCWLDLLELLGGRFTAPEVLALCESPAVLRRFGLDPALLPRLHVWVGEAGIRWG 462

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                R                                    +    LA   V+ +    
Sbjct: 463 LDADHRRELGVPTGEPHSWRFGLDRLLLGYLMGESPVPFAGRQPYGPLAGGEVNELGGFA 522

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
           + + T    + +      ++ W    +  L +V   E      L   +      +     
Sbjct: 523 SLIDTLDHWRRTLRAERPVAAWCDELLALLADVFAAEEDDPGLLHLSQAINDCRTDCRLA 582

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                   A    ++       DG            +     +  R + F  + L G+N+
Sbjct: 583 RHDAPIPLAVIKAYLQETLSRSDGGQAFLSG----RVTFCNMVPMRSVPFRVICLLGMND 638

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRE----- 705
             +P+      F     +  L  +             E     R +   +   R      
Sbjct: 639 QDFPRGQHPVSFDLMAAEPRLGDRNRRNDDRY--LFLEALLSARDVFFLSWVGRNQRDDS 696

Query: 706 -------------------NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD-----W 741
                                        L +L        F      G   +      W
Sbjct: 697 LAPPSVVVSELRDYLEQSCRCAEGATGSVLDQLTTDHPMQPFSRRCYGGDSAVASYNPCW 756

Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF-- 799
                     P    P   P  E +       ++ +    P   +  RI+ L        
Sbjct: 757 LPAGHEAEPSPFLAVPLEPPGEEWRTVDIG--QLVRFWRHPVRFFLERIIGLRLREEIPV 814

Query: 800 --KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
             + +P   D    +H     + +     +  ++   ++
Sbjct: 815 IEESEPFALDPLQQYHLRRQTIGELLAGLSPEQVRSSLE 853


>gi|86739360|ref|YP_479760.1| ATP-dependent DNA helicase PcrA [Frankia sp. CcI3]
 gi|86566222|gb|ABD10031.1| ATP-dependent DNA helicase PcrA [Frankia sp. CcI3]
          Length = 838

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 76/761 (9%), Positives = 182/761 (23%), Gaps = 99/761 (13%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+R     + G ++  +  + +          ++                 
Sbjct: 115 ITFTNKAANEMRERVSALVGPRARAM-WVSTFHSACVRILRSEAK--------------- 158

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
               RL       + D        + ++  +        A+ LA  I  ++ E   WE  
Sbjct: 159 ----RLGFGSTFSIYDAADAQRLITLVTRDLDLDPKRHPARGLAAQISNLKNELIDWEA- 213

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMK 224
                ++           +      + +RL + NA       +  +             +
Sbjct: 214 ---ARDRATNHLERT---VAEVYAAYQQRLAQANALDFDDLIMMTVNLLQSFPDVAEHYR 267

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                +++     +  A   L+  +   P  A    G     P          ++     
Sbjct: 268 RRFRHVLVDEYQDTNHAQYVLVRELVGQP--AYFGGGSAPVEPAEPAAGPGTWASGAVPP 325

Query: 285 NT----TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                   +    Y+         ++ E+      V           +            
Sbjct: 326 AELCVVGDADQSIYAFRGANIRNIVEFEEDFPNAAVILLEQNYRSTQTILSAANAMIARN 385

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITADRN 397
           N    +    +       +    ADNE +EA  +A     L  +        A+      
Sbjct: 386 NQRKAKRLWSDAGDG-EKIVGFAADNEHDEAAFVAEEVDRLSDAKLARPADVAVFYRTNA 444

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R  +    R G+   +  G+          L + L  +   +D + +  ++  P    
Sbjct: 445 QSRVFEEIFVRVGLPYRVVGGVRFYERKEIRDLLAYLRVLANPSDTVNLRRILNVPRRGI 504

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G   +        +E +                                      + E  
Sbjct: 505 GERAEAALAGFADVERI----------------------------------GFAQALERV 530

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLTVTCLQNVCLDEHRKLPN 574
           +    +     + +           +   +  ++      + T    + +  D       
Sbjct: 531 DEVPGIAARSAKAVREFTALLAELRAVAADNPVAVVEGVLERTGYLSELLAEDTVESQGR 590

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   +E   +   F++ +  G        E+++ ++ + D + V         + ++   
Sbjct: 591 VENLQELVGVVQEFARRLPEG-----TLAEFLEQVSLVADADQVPTDDGSDGVVTLMTLH 645

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L GL +GV+P                  L    +   +    +      
Sbjct: 646 SAKGLEFPVVFLTGLEDGVFPHLRT--------------LGDPTQLEEERRLAYVGVTRA 691

Query: 695 R-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
           R  L  TR++  +     A     R L        D  +               +     
Sbjct: 692 RIRLYLTRAVMRSAWGQPAYNPPSRFLGEVPDTLVDWRRLADPPPAPAGTSWGSSGGFGS 751

Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
               +      A  +    S                     
Sbjct: 752 GATGRGAAGAPAARKPLPNSPFSGRARPAARAVLELRQGDR 792


>gi|77920551|ref|YP_358366.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380]
 gi|77546634|gb|ABA90196.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380]
          Length = 678

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 67/701 (9%), Positives = 171/701 (24%), Gaps = 107/701 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PP 102
            ++     T +A +E+R     I G+K     +I +   +       D+           
Sbjct: 51  QAILAVTFTNKAAREMRERVEGIVGRKQAKGMVISTFHALCVRILKEDIEQLGYKKNFSI 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                +L  +  L+      L                         A  +  +I   +  
Sbjct: 111 YGGADQLRLIRDLLQEVNTGLRKFD---------------------ADRVLWLISDAKNR 149

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               +            +       +      +   L   NA       +  +R   +  
Sbjct: 150 LIPPDR---FAPTHGDEY----GPVVATIYPRYQRALKAFNAVDFDDLIMLTVRLLQDKP 202

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     +++     +  A  RL+  +A       V+   D       W      
Sbjct: 203 AVLEKYRQRFRYLMVDEYQDTNAAQYRLLRLLAEGHRNLCVV--GDDDQSIYGWRGADLG 260

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +                            G +   +              +  
Sbjct: 261 NILDFEKDFP--------------------------GTMVIRLEQNYRSTGNILTAANAV 294

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL---RMSLDENKKKSALITA 394
              N       +         +  +  +++ +EA  +   +   R     + +  A++  
Sbjct: 295 IRNNLKRKIKALWTADGPGDKIDYLLCEDDEDEARVVVERIMAERFKARLSYRDFAILFR 354

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R  + +L    +   +  G           + +    +    D + +  ++  P 
Sbjct: 355 TNVQSRAFEEQLRYQDVPYVLIGGQQFFDRKEVKDVLAYFRVLLNPRDEVNLLRILNTPK 414

Query: 455 AKFGFPEKYLS-RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
              G        R     ++   +  KN  ++  L   V++ IAT  +       + R+ 
Sbjct: 415 RGIGDTSADRLIRFSAEHDIPLWQVLKNPAEVEGLGDKVMESIATFVDLMQNFRRRFRVG 474

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            +  +    L+  +      L T +    +     ++++                   + 
Sbjct: 475 -QLSDTGRELLQELRFEDDLLRTAQDPDKARRRMANVAEVINA---------------MA 518

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
           +    E   TL     K               + ++ R       K    +   + ++  
Sbjct: 519 SYEQREVQPTLEGFLDK---------------VSLLDRDEPPRQDKDAKLQRDAVVLMSL 563

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             S+ L F  + L G+ + + P   +K    +   +  L      +   Q       A  
Sbjct: 564 HSSKGLEFPCVFLVGMEDELLPHKKSKGANSNIEEERRLCYVGITR--AQKKLTLLGAAR 621

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            +                 S +L+ +          +    
Sbjct: 622 RKKFGV-------MQLRSPSCFLEEIPDEVLHSAASDAPTA 655


>gi|172040209|ref|YP_001799923.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
 gi|171851513|emb|CAQ04489.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
          Length = 1022

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 81/732 (11%), Positives = 199/732 (27%), Gaps = 88/732 (12%)

Query: 30  LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKF 89
           L     +     +    +     T +A  E+R    ++ G  +  +  + +   +     
Sbjct: 197 LTRRIAWLLSTGVAPWQILAITFTNKAAAEMRERVADLVGPAAERM-WVSTFHSMCVRIL 255

Query: 90  TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
            ++  L   LN   +         RLI +        +K+  P   LS   +        
Sbjct: 256 RSNAHLVAGLNTNFTIYDSDDS-KRLITMVIKDHNLDVKEFAPRGVLSTISNW------- 307

Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
                     + E        A  +          A       K        ++    +G
Sbjct: 308 ----------KNELVGPTAAKAEADADSNFHKQTVASLYADYQKRLRAA-NAVDFDDLIG 356

Query: 210 YQIALMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCH 265
             + ++R   +     +     +++     +  A   L+ST+       G  +    D  
Sbjct: 357 EVVGILRNNPQVAEHYRRRFRHVLVDEYQDTNHAQYVLVSTLVGEEGSGGGELAVVGDAD 416

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +   T ++      +                 L+      + + + +N +  R+ 
Sbjct: 417 QSIYAFRGATIRNIEEFERDYP---------NAHTILLEQNYRSTQTILSAANAVIDRN- 466

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
                           T+    K+         +A   ADNE +EA  IA  +   +DE 
Sbjct: 467 ----------------TERRPKKLWTDLGQGEKIAGYVADNEHDEARFIAGEIDRLVDEG 510

Query: 385 -NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                 +++    N +R ++  L R G+   +  G           + S L  +    D 
Sbjct: 511 VAYGDISIMYRTNNASRALEDVLMRSGLPYKVVGGTRFYERKEIRDIVSYLKVLDNPEDT 570

Query: 444 MAIATLVKHPLAKFGFPEK-------------YLSRAKNALELVALRGNKNSYDIMDLKS 490
           +A+  ++  P    G                 +    ++A E    R      + +    
Sbjct: 571 VALRRIINTPRRGIGDRALAQVTVHAEAQGVSFAQGLRDAAEDKVARLGGRGRNAIAGFL 630

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++D +     +  +              A++            +    +        ++
Sbjct: 631 SMMDGLRKTVEDAELRASDGSPLGLPDLGAIIAAIVEQSGYRAELEKSNDPQDQTRLDNV 690

Query: 551 SDWTKLTVTCLQNVCL--DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
           ++   +     Q                 + E +    +   +++ G     +   +++ 
Sbjct: 691 NELISVGHEFSQEAAHQKAYEEMPAGKAVQPEVQLTQDVADAMLDEGEAPLGSVQAFLER 750

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
           ++ + D + +  +      + ++    ++ L F  + L G  +G +P   A         
Sbjct: 751 VSLVADADQIPEEGA--GQITLMTLHTAKGLEFPVVFLTGWEDGQFPHMRA--------- 799

Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGTRH-----LIYTRSLRENNIPTIASRWLQRLLVLG 723
                L    +   +    +      +         TRS     +    SR+L  +    
Sbjct: 800 -----LSDPTELAEERRLAYVGITRAKEKLYICRAITRSGWGAPVNNPPSRFLSEVPEEL 854

Query: 724 GTDFFDNLKKRG 735
                +     G
Sbjct: 855 VEWLREEPDWSG 866


>gi|296269817|ref|YP_003652449.1| RecB family exonuclease-like protein [Thermobispora bispora DSM
           43833]
 gi|296092604|gb|ADG88556.1| RecB family exonuclease-like protein [Thermobispora bispora DSM
           43833]
          Length = 286

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 78/246 (31%), Gaps = 21/246 (8%)

Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
           P         S S     +  P     R I +L   P          RGTL H ++  L 
Sbjct: 4   PEERTIIGALSPSRAGDFMTCPLLYRFRVIDQLPERPSP-----AAVRGTLVHAVLERLY 58

Query: 821 K-KRINKNTPEINHLMKQIIDSHFEKENLPPHI------DIIWRHLFHKISHSFLEHEEK 873
                 +       L++        +E     +         W     ++   +   E+ 
Sbjct: 59  DLPAAARTVAAARDLLEPEWRRLLAEEPEYAGLFATDEERDAWLARAREMIERYFTLEDP 118

Query: 874 IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
            +  +E     +  +  ++S G+ L G+ DR+D+  +G V I DYKTG  P  E   K +
Sbjct: 119 RR--LEPAEREMYIEAVLDS-GLLLRGYIDRLDVAPTGEVRIVDYKTGSAPGPEFEAKAL 175

Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
             Q+     AL               L  + L     +  + ++    + +   E     
Sbjct: 176 -FQMKFYGLALWR-----ARGVVPRMLQLMYLGSGEVVRYVPDEADLRATERKVEALWAA 229

Query: 994 LIEIVT 999
           +   + 
Sbjct: 230 IDRALR 235


>gi|240172870|ref|ZP_04751529.1| putative ATP dependent dna helicase [Mycobacterium kansasii ATCC
           12478]
          Length = 768

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 75/724 (10%), Positives = 183/724 (25%), Gaps = 95/724 (13%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            +  +     T +A  E+R   + + G ++  +  + +              L       
Sbjct: 62  AVGQILAITFTNKAAAEMRERVVRLVGARARYM-WVSTFHSTCVRILRNQASL------- 113

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +  +     +       R  L  I +D+  +     P            LA+ I  ++ E
Sbjct: 114 IEGLNSNFSIYDADDS-RRLLQMIGRDMGLDIKRYSPRL----------LANAISNLKNE 162

Query: 163 EKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--- 218
                  L  L               +      +  RL   NA          +      
Sbjct: 163 LIDPHRALAHL--TDDSDDLART---VASVYAEYQRRLRAANALDFDDLIGETVAVLQTF 217

Query: 219 --AEHLMKGTKGPIIIAGSTGSIPATARLMSTV-----ANHPNGAIVLPGLDCHIPTAIW 271
                  +     +++     +  A   L+  +      +    A +    D       +
Sbjct: 218 PDIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRDTEDDVPPAELCVVGDADQSIYAF 277

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
              T ++      +   +T            L+      + + + +N +  R+    +  
Sbjct: 278 RGATIRNIEDFERDYPDATTIL---------LEQNYRSTQNILSAANSVIARNAGRREKR 328

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKK 388
           L  D  +                    +    ADNE +EA  +A    AL    +     
Sbjct: 329 LWTDAGEGEL-----------------IVGYVADNEHDEARFVAEEIDALAERGEITYND 371

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            A+     N +R ++    R GI   +  G+          + + L  +    D +++  
Sbjct: 372 VAVFYRTNNSSRSLEEVFIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSMRR 431

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
           ++  P    G   +            +                          NT     
Sbjct: 432 ILNTPRRGIGDRAEACVAVYAENTGSSFADALQ----------AAAEGKVPMLNTRAEKA 481

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
            +   E    L   L D + + +  ++     +     +    +  +L            
Sbjct: 482 IAGFVEILDGLRGRLDDDLGELVEAVLERTGYRRELESSTDPQELARL------------ 529

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                 +    E     +  + +      +    +    +    +  ++ +     +  +
Sbjct: 530 DNLNELVSVAHEFSADQANTAALEPDNEDVPDTGVLAAFLERVSLIADSDEIPEHGAGVV 589

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            ++    ++ L F  + + G  +G++P   A +       +  L      +   +     
Sbjct: 590 TLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDDPTELSEERRLAYVGITR--ARQRLYV 647

Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
             A         RS     +    SR+L+ +            K      +    +    
Sbjct: 648 SRAM-------VRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGAP 700

Query: 749 TKQP 752
              P
Sbjct: 701 RSAP 704


>gi|253698715|ref|YP_003019904.1| UvrD/REP helicase [Geobacter sp. M21]
 gi|251773565|gb|ACT16146.1| UvrD/REP helicase [Geobacter sp. M21]
          Length = 731

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 74/706 (10%), Positives = 182/706 (25%), Gaps = 125/706 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     + G     LP+I +          +              
Sbjct: 53  QILGVTFTNKAAGEMRERLAHMLGDGE--LPLISTFHSTCARILRS-------------- 96

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                E+  L       + D           +  ++     + AK LA  +D  + +   
Sbjct: 97  -----EIRHLGYDSNFAIYDDKDCEKLLKDCATELNLDEKRYPAKALAGALDEFKNQGLA 151

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + + A        +       L    + + ERL   NA       +  ++   +H    
Sbjct: 152 PDQVPA-----DSPY-QAT---LARVYRCYQERLKRCNAVDFGDLLLLAVQLLEQHREVR 202

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    I++     + P   RL+  +A       V+   D       W     ++  
Sbjct: 203 DKYLQRYRWIMVDEYQDTNPVQYRLVQLLAGERKNLCVV--GDDDQSIYGWRGADIRNIL 260

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                   +K   +++    S  +   +  + +         + 
Sbjct: 261 EFEKDFP----------------GVKVVKLEQNYRSSKTILDGAWNVVQKNRGRKPKRLW 304

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
             +    +          +A     NE EEA ++       LDE     + A+       
Sbjct: 305 TDNPDGER----------IAYRTLPNEWEEARTVCRETERFLDEGGDLSEVAVFYRTNAQ 354

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  +   GI   +  G+     L    + + L  +   +D +A+  ++  P     
Sbjct: 355 SRAIEDAMVSAGIAYHMVGGVRFYARLEVKDILAYLKVLDNPSDDVALKRIINTP----- 409

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                  +  +  L     ++     +      +   LS   K 
Sbjct: 410 ------------------PRGIGNTTVQRLSEFAAEKGIPLYDAMLEGAFGPLLSVAAKG 451

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD-EHRKLPNLWF 577
                   I                    + +S+ T   +                    
Sbjct: 452 KVAAFAQEI-----------DGYKEKAEQMPLSELTSTIIYDSGYFARLKALGSDEAQER 500

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-IDGETVKPKIEKSSTLFILGTLES 636
            E  + L +                    D + ++ +  +  +    K ++  ++    +
Sbjct: 501 IENLQELVTAMQAFENGPGE-----KGLADFLEQVALVSDLEQEGDGKKASATLMTLHSA 555

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + + G+ E ++P   A              L+   +   +    +      + 
Sbjct: 556 KGLEFPLVFIIGMEERLFPHVRA--------------LEDPAQMEEERRLCYVGMTRAKK 601

Query: 697 LIYTRSLREN-----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
            ++  ++R             +R++  +         +  +   Q 
Sbjct: 602 RLFLLNVRRRHIFGQEQMNPPARFIADIPRELLDTGDNWQEPSRQR 647


>gi|154246915|ref|YP_001417873.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154161000|gb|ABS68216.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 1131

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 81/804 (10%), Positives = 184/804 (22%), Gaps = 87/804 (10%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-----GTKGPIIIAGSTGSIP 240
            +  +   + + +               A      +H             +++     + P
Sbjct: 341  EEARPVLQRYRDHKRASAQLDFDDLIFAARDMLRDHDEVRRALGQRFAHVLVDEFQDTDP 400

Query: 241  ATARLMSTVANHP------------NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
                +   +   P                +    D       +      +          
Sbjct: 401  LQTEIFWRLCGEPVEGNDDWTRFRIRPGALFLVGDPKQAIYRFRGADVGAYVQARDAFRV 460

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                      LL      R     L  V+           +           +   L   
Sbjct: 461  QDPD-----SLLSISTNFRSCASILTFVNERFEAVLSADGQPGFTALDPFHSDRGGLCVA 515

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--------------KKSALITA 394
              +I     +           EA +IA      ++ +                  AL+  
Sbjct: 516  ALDIAVADENGKASAEQQRDAEADAIAELCARLIESHPIIDRRSGAERPCQPGDIALLAP 575

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                  R +  L R GI +   AG  L        L +L   +    D +A+  L++ PL
Sbjct: 576  TGAELWRYEEALERRGIPVATQAGKGLFRRQEIQDLIALTRVLADRRDTLALGALLRGPL 635

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                  +  L                   D+    +++   +A           +   S 
Sbjct: 636  VGLTEEDL-LDIVWGLPRSKEQPDRIPRLDLSIDPAVITHSLARAVIERLQSLSRRGNST 694

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
               EL    VD +      L  ++        N+ +     L+              +  
Sbjct: 695  TPHELLSQAVDVMRVRPLLLERHRGQAERALANIDLY--LSLSTGYAVRGLRAFAEAMTA 752

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
             W +E  + +        E  +    +A + ++                      ++   
Sbjct: 753  AWSDEA-RAVEGRPDAQEEAVALFTMHAAKGLEWP-------------------IVIPVN 792

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
                +      +       +  +                 +  ++        +  A   
Sbjct: 793  TMTGVMAPESAVIDRQTETFYCSVLGVAPEGYETARQAEKEELDRERI--RLWYVAATRA 850

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
            R L+        +     S W+       G          G         L         
Sbjct: 851  RELLVL---PRLDTTPSKSAWI-------GLVDLSLADLPGLDASHLPAGLTAAGAGTDN 900

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK--------------LDFIPHFK 800
             + +     EA+  T + + +  L        A  +L+                 +    
Sbjct: 901  TQTRATFAAEAETITAAQTRLTWLAPSRDENAAGIVLREEEAAIWTGLADDQPPELEAAA 960

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
                  +RG + H ++ E++    ++    +      +I +        P   +    L 
Sbjct: 961  LVQGGRERGLILHKLMEEVLTGETSEAEAALTDRAADLIHALGRSPVSAPATGLSAEELA 1020

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF-VDITDYK 919
              +  +    +  I          + A  A + +     G  D + + + G  V + D+K
Sbjct: 1021 ACVVQTLALPDIAILRPDLLAEFPVYAAQASDGVETATAGITDALTIGEDGRPVVVVDWK 1080

Query: 920  TGDNPKKETAQKLIDPQLSLEAAA 943
            +  NP +         Q+      
Sbjct: 1081 SDVNP-EAQTLDHYRAQVRAYLDM 1103


>gi|153004223|ref|YP_001378548.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152027796|gb|ABS25564.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 1196

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 82/825 (9%), Positives = 180/825 (21%), Gaps = 82/825 (9%)

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA--EAEHLMKGTKGPIIIAGST 236
                L     +            ++    +     L+R        ++     +++    
Sbjct: 317  EELCLLVAEAEARYAATKRAARAVDFDDLLVRARDLLRHDGALRAELRARYRALLVDEYQ 376

Query: 237  GSIPATARLMSTVANH--PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
                    L   ++    P G +++   D       +                       
Sbjct: 377  DVNGVQQELFELLSGPGGPAGPLLVAVGDLKQSIYRFRGADVAVFARLIRRLEAGDGRVL 436

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             L+          E V  +                  +    +D       E   P  + 
Sbjct: 437  HLSDNHRSAPAVVELVNEV-FARCMRPPDGAPPRDDEIRFSDADRLVPRRPEGARPACEL 495

Query: 355  CFSDVALIEADNEREEAISIAIALR--------------------MSLDENKKKSALITA 394
                     A+  R EA +IA  +R                              A++  
Sbjct: 496  LEDHEDGNAAERRRREAGAIARRIRAVVSGAAGVAVRERGEGGAERVRRPRLSDVAILFR 555

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                    +  L   GI   ++ G           L  LL  +   +D +  A +++ P+
Sbjct: 556  RLTQIGEYERALRAAGIPYRLARGGGFYQAPEVRDLGELLATLADPSDAIGWAAVLRSPM 615

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                    +L                    +  L  +  +R+A +            L+ 
Sbjct: 616  CGVSDATLFLLARA---------------GLARLARVSPERLAAEVARALGEGGAGALAP 660

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
            E  E A  +     +    L                     L    ++ + LD       
Sbjct: 661  EAAERA--VASVPAEDWARLTRLLDAWRELHALRDRLAPDALLTRAVERLDLDAVLLAGP 718

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                       ++            A  +               + ++E    + +L   
Sbjct: 719  DGERRAVNVAKAIALAARFGSDGGTAAELARHLRAQASRPPREPEAEVEAGDAVALLTVH 778

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA---------- 684
            +++ L +  + +  L                  + +      A+++   A          
Sbjct: 779  QAKGLEWPVVFVPDLGARPRSDARRALLDAEGRLCAMRYDPAADRFEETASVRDARAHER 838

Query: 685  --------AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                       +      R  +       N   +                    L++ G 
Sbjct: 839  RAAAAESRRLLYVAMTRARDRLVLSGEASNGAESWRGLVEVAAEARAELVRRIALEEAGS 898

Query: 737  C----YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                             + P    P+            + +E+ +    P      R+L 
Sbjct: 899  APACGPPVDGDDAPAPAEPPAVAPPRLAGAPRVAAVRVAVTELAEYARCPRRHLLGRVLG 958

Query: 793  LDFIP-----HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
            L                 T RGTL H ++ E               L        ++  +
Sbjct: 959  LPEPHGARGAPADDPGRATARGTLAHAMLAE--ADLAAPPLERRAQLAAAAARRGYDPRS 1016

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-----SIGIHLTGFA 902
                  +     F          E      + +    +P  + +         ++L G  
Sbjct: 1017 PGVRRILGEVARFANAEGGRALAEAARDGRLRR---EVPFLLRLPSRTRGDPSVYLVGAI 1073

Query: 903  DRIDLLKSGFVD-ITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            D + + +      + DYK      +  A      QL     A + 
Sbjct: 1074 DALMVDRRARALTVVDYK--YATWRPDAADRYRLQLLAYVLAARR 1116


>gi|299136332|ref|ZP_07029516.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
 gi|298602456|gb|EFI58610.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
          Length = 982

 Score = 86.5 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/509 (10%), Positives = 126/509 (24%), Gaps = 71/509 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           ++   +    +     P     +     T +A +E+     +I G  +   P + +    
Sbjct: 78  VITHRIAYLIKERGAAPDS---ILAVTFTNKAAKEMAERVEKILGHSTLASPTLATFHSF 134

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                  D+     L      + R   +       +  +   +K L  +     P     
Sbjct: 135 CVRVLRRDIEA---LRVGNVGLTRSFAIYDENDQ-QAVVKQALKRLGIDDKALKPRVALG 190

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
            I  AK                ++                   +    + + + L + NA
Sbjct: 191 RISWAK----------NHMIDPQEYFLASTNPMEEK-------IAHIFEIYKKELAKANA 233

Query: 205 SSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  +  +R                  ++I     +      LM  +  H N  +V 
Sbjct: 234 LDFDDLLLETVRLLKSSSEVRERYNRKYKYLLIDEYQDTNRPQYELMKLLGRHGNVCVV- 292

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       W     ++      +                               +  
Sbjct: 293 --GDEDQSIYSWRGADIRNILEFEKDFPDVR--------------------------TIR 324

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
           +                   +NT      +   ++  S +   EA +   EA+ IA  ++
Sbjct: 325 LEQNYRSTQVILEGASAVVAQNTQRKGKNLWTAREGGSMIGYYEAPDGENEALFIADRIK 384

Query: 380 MSLDENKK-----KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
             L E        + A++    + +R V+  L R+ I   +  G           + S L
Sbjct: 385 KYLKEAGASEEEPRCAVLYRTNSQSRLVEEALRRYQIQYHMVGGFSFYDRSEVKDILSYL 444

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
             +   +D +A+  +V  P    G                             +     +
Sbjct: 445 KLVQNPHDSVALGRVVNSPPRGIGKTTMDTLERMALT--------VGMSSWDAIARASEE 496

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLL 523
           ++   +  T +  ++  + +    L    
Sbjct: 497 KLLPARALTALNSFRKLIEDARAMLGPDF 525


>gi|21244868|ref|NP_644450.1| DNA-dependent helicase II [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21110576|gb|AAM38986.1| DNA helicase II [Xanthomonas axonopodis pv. citri str. 306]
          Length = 730

 Score = 86.5 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 64/710 (9%), Positives = 164/710 (23%), Gaps = 120/710 (16%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E+R         G +      I +   +           +        + +
Sbjct: 62  VTFTNKAAGEMRHRTDLQLRNGSRGMW---IGTFHGLAHRLLRLHWQDARLPEGFQVMDS 118

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R++                                       I+  + E ++
Sbjct: 119 DDQLRLVKRVVQALELDESKYPPKQMSWW---------------------INEQKDEGRR 157

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +      +    W             + ER             +       +     
Sbjct: 158 PQHIQ----PEPNDDWTEVRRQ---VYAAYQERCDRSGLLDFAELLLRAHELLRDTPALL 210

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A       V    D       W     ++  
Sbjct: 211 AHYRARFREILVDEFQDTNAIQYAFVRVLAGESGN--VFVVGDDDQAIYGWRGAKVENVQ 268

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G  +  +       +      +     
Sbjct: 269 RFLKDFP--------------------------GAQTVRLEQNYRSSANILGAANAVIAH 302

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA  +    R  + +     + A++      
Sbjct: 303 NPDRIGKQLWTDSGNGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAQ 362

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L    +   +  G+            + L  +   +D  A    V  P     
Sbjct: 363 SRALEEALISEQLPYRVYGGMRFFERAEIKDALAYLRLLTNRSDDAAFERAVNTP----- 417

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        +    LD +      + +  W++ +    + 
Sbjct: 418 --------------------------TRGIGDRTLDEVRRLARASALSLWEAAMLCTQQN 451

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                  + L     L+     +          D   +     ++   +    L +    
Sbjct: 452 TLAARARNALATFLSLIGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGLDSESRT 511

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E    L S+ S+             E +  +                  + ++    ++ 
Sbjct: 512 ENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGAGQAQAGEEGVQLMTLHSAKG 571

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + L GL +G++P   +              L+ + +   +    +      R  L
Sbjct: 572 LEFPIVFLVGLEDGLFPSARS--------------LEESGRLEEERRLAYVGITRARQKL 617

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
           +   +        +   + SR+L+ +      +    ++      L   R
Sbjct: 618 VLCYAESRRIHGQDNYNVPSRFLREIPRDLLNEVRPKVQVSRTASLGAAR 667


>gi|326576083|gb|EGE26002.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis O35E]
          Length = 689

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 75/689 (10%), Positives = 177/689 (25%), Gaps = 108/689 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPV 103
            +T    T +A +E++S   +I   + +    + +      +    +L  +        +
Sbjct: 65  RITAVTFTNKAAREMKSRVQKILSHEKSRGLTVSTFHQFGLQFLRYELKHTSLKPNFSIL 124

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                   LA L+   R+ L    +       +       N +   K+ A+ +D      
Sbjct: 125 DADDCQRLLAELM--VRDNLSGAERRELVHEAIKKISDWKNDLIAPKDAAETLD------ 176

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              EDL                       + +   L   NA          +R   E   
Sbjct: 177 -DPEDLG-----------------FVHLYELYERNLRAYNAVDFDDLIAMPVRILRESHE 218

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +  A   L+  +        V+   D       W     ++
Sbjct: 219 VKDKWQNRIRYLLVDEYQDTNTAQYELIKLLVGRLGRFTVV--GDDDQSIYTWRGAKPEN 276

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
             +   +              +  L+        +   +N +   +  + +  L  D  D
Sbjct: 277 MALLKQDFPNLE---------VVKLEQNYRSTNHILGAANAVIANNEHMFEKSLWSDKGD 327

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITAD 395
                               + +I  +N+ +EA  +A  +      N +     A++   
Sbjct: 328 G-----------------EKIRVITCNNDFDEAERVAKEILTHRLRNNQTWDKYAVLYRS 370

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              AR ++ +L +  I   +S G           L   L  I   +D  A   ++  P  
Sbjct: 371 NFQARALEAQLRQLEIPYKLSGGTSFFARTEIKDLMGYLRIIINPDDDAAFLRVINTPKR 430

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G                                     +        V       +  
Sbjct: 431 GIGSVTLEKLGL--------------------FAQHCGTSLLGACTRAGVKDALGAKAGA 470

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             E     +++    +                          +  ++    +  ++   L
Sbjct: 471 IIESFGEFINYYTHQLHDNSDPMPLVRQMITE-------TGYIDYVKESSKNPQQEKGRL 523

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              E      +      +       +A+    ++  +++ +    + E ++ + ++    
Sbjct: 524 DNIEALYLSIAALINRADDEHDKTIDAVIRKMVLLDMLEQQ---QEEENTNKVNLMTLHA 580

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L FD + + G  E +       N  +S  +         E+           A    
Sbjct: 581 AKGLEFDYVYIIGCEEKL---LPHVNSIMSANI---------EEERRLMYVGITRAKSEL 628

Query: 696 HLIYTRSLRENN--IPTIASRWLQRLLVL 722
            L+  +  R          SR+L  L   
Sbjct: 629 TLLLCKQRRSGADFKVVTPSRFLDELPAE 657


>gi|55981396|ref|YP_144693.1| UvrD protein [Thermus thermophilus HB8]
 gi|55772809|dbj|BAD71250.1| UvrD protein [Thermus thermophilus HB8]
          Length = 692

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/485 (11%), Positives = 120/485 (24%), Gaps = 44/485 (9%)

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            ++D  +      + L     E Y     L+   L      + E L    A       + 
Sbjct: 139 ALLDRAKNRGVGLKALLGELPEYYAG---LSRGRLGDVLVRYQEALKAQGALDFGDILLY 195

Query: 214 LMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
            +R   E      L++     I +     + P   R    +A     A ++   D     
Sbjct: 196 ALRLLEEDEEVLRLVRKRARFIHVDEYQDTSPVQYRFTRLLAGEE--ANLMAVGDPDQGI 253

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             +     K+    +       +P+  + +L                             
Sbjct: 254 YSFRAADIKNILDFT-----RDYPEARVYRL---------------------EENYRSTE 287

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
                 +   ++N   LE  +  +++    V L  A++ REEA  +A  +        + 
Sbjct: 288 AILRFANAVIVKNALRLEKALRPVKRGGEPVRLYRAEDAREEARFVAEEIARLGPPWDRY 347

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            A++      +R ++  L   GI   +  G+          L +         D +++  
Sbjct: 348 -AVLYRTNAQSRLLEQALAGRGIPARVVGGVGFFERAEVKDLLAYARLALNPLDAVSLKR 406

Query: 449 LVKHPLAKFGFPEKYLSRAKNAL-----ELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
           ++  P    G       +                  +       L+  V      Q    
Sbjct: 407 VLNTPPRGIGPATWARVQLLAQEKGLPPWEALKEAARTFSRPEPLRHFVALVEELQDLVF 466

Query: 504 HVPHWQSRLSEEDKELAVLLVDHIL-QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                  R   E  +    L +         L   +    +      + D+        +
Sbjct: 467 GPAEAFFRHLLEATDYPAYLREAYPEDAEDRLENVEELLRAAKEAEDLQDFLDRVALTAK 526

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                E      L      K L      ++     +       +  +  L +   +    
Sbjct: 527 AEEPAEAEGRVALMTLHNAKGLEFPVVFLVGVEEGL-LPHRNSVSTLEGLEEERRLFYVG 585

Query: 623 EKSST 627
              + 
Sbjct: 586 ITRAQ 590


>gi|257068093|ref|YP_003154348.1| ATP-dependent DNA helicase PcrA [Brachybacterium faecium DSM 4810]
 gi|256558911|gb|ACU84758.1| ATP-dependent DNA helicase PcrA [Brachybacterium faecium DSM 4810]
          Length = 932

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 79/722 (10%), Positives = 185/722 (25%), Gaps = 92/722 (12%)

Query: 28  GTLVENFRYDPLNPLLLA-SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86
             L     +   +   L   +     T +A  E+R    E+ G  +  +  + +      
Sbjct: 149 RVLTRRIAHLLHSREALPGEILAITFTNKAAAEMRERVGELVGPVARSM-WVSTFHSACV 207

Query: 87  EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
                D   +         I    +  RLI      L    K   P              
Sbjct: 208 RILRRDAAAAG--LKSSFTIYDSADSLRLITTIAKDLQLDTKKHAPR------------- 252

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
            LA  ++ + + +        D           +       L      +TERL + NA  
Sbjct: 253 ALASRISSLKNDL----VDPIDFADQAESAKNPFERT----LAQIYTNYTERLRQANAVD 304

Query: 207 PVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                   +    E+       +     +++     +  A  +L+  +      A +   
Sbjct: 305 FDDLIGLTVTLLRENPAIREGYRRRFRHLLVDEYQDTNTAQYQLVRELVGDDPHASLTVV 364

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            D       +   T ++      +   +                           +  + 
Sbjct: 365 GDSDQSIYAFRGATIRNIIEFEQDFPSAR--------------------------TIVLE 398

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
                        ++    N    +  +   Q     + L  AD+E+ EA  I   +   
Sbjct: 399 QNYRSTQNILAAANSVIEENEGRRKKNLWTDQGEGEQITLYVADDEQAEARYIGRQIDAL 458

Query: 382 LDENKK--KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
           +D+ ++    A+       +R ++ +L R G+   +  G             + L  +  
Sbjct: 459 VDDGRRAGDIAIFYRANAQSRALEDQLIRIGLPYRVVGGTRFYERREIKDAIAYLQVLAN 518

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL-RGNKNSYDIMDLKSLVLDRIAT 498
             D + +  ++  P    G   +         E +      + + +   + +  L+ + T
Sbjct: 519 PADEINLRRILNVPKRGIGDRAEAAVAMLAERERIGFGEALRRAEEAPGIATRSLNAVRT 578

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--------------CITPLVTYKTNKNST 544
                      +   +   EL   ++                    +  L    +     
Sbjct: 579 FVAMLEDLQQMAADGDGPAELLEAILQRSGYYAELQGSDDPQDESRLENLAELVSVAAEF 638

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                  D          +    +         E  G   + +      T       ++ 
Sbjct: 639 EAQAEEEDALASEYEDEADAPATDTPGTEAPETEAPGAPGADIAPDAALTAPDDPEASLV 698

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
              +    +  +  +   E+   + ++    ++ L F  + L G+ +G +P N       
Sbjct: 699 DRFLEKVSLVADADQIPGEEDQFVTLMTLHTAKGLEFPVVFLTGMEDGTFPHNRT----- 753

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT-----RSLRENNIPTIASRWLQRL 719
                    L   E+   +    +      R  ++      R+L        ASR+L  +
Sbjct: 754 ---------LSDPEELEEERRLAYVGITRAREKLFLTRAQMRALWGQTQFMPASRFLDEV 804

Query: 720 LV 721
             
Sbjct: 805 PE 806


>gi|78213178|ref|YP_381957.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Synechococcus
           sp. CC9605]
 gi|78197637|gb|ABB35402.1| exodeoxyribonuclease V, gamma subunit [Synechococcus sp. CC9605]
          Length = 1081

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 90/873 (10%), Positives = 206/873 (23%), Gaps = 69/873 (7%)

Query: 19  REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78
            E +  LL+  L+E        P  L +V + V T    + L  +     G  S +    
Sbjct: 10  AEFLARLLSRQLIE------QQPGPLETVEVMVNTWPTSRWLGEQLATANGISSLV--RF 61

Query: 79  KSLGDVVEEKFTADL-LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
              G  + +     L L +   +P  +       L  L  +    +   ++    +   +
Sbjct: 62  PFPGSRLRQLVRQVLHLPAQEDDPWRAGQLVWAVLELLPELLEQPVAQPLRVWLAQREGT 121

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                 +   LA+++AD +D         + L   K  +    W             W  
Sbjct: 122 ASGLTRDRWQLARSIADAMDDYALYR--PDQLEQWKQPRPDDDWQPVL---------WRL 170

Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNG 255
               L  +         +       +        + + G +   P    L+  ++     
Sbjct: 171 LAQRLPRAPFGLQVREAVECLRRGDVDPALLPERLRLFGISALAPVQVDLIQALSGLLAV 230

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            I L      +     +                       L  +L  +  + + +     
Sbjct: 231 EIYLLTPCPDLWQRCGSRRASLGDEWLIPPDGGWLAEAPRLEAVLGRMGAEFQQLLEGSG 290

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC-----------FSDVALIEA 364
            +     R   +    L    ++ R   +L+     +                 +    A
Sbjct: 291 EAQLGERREGDLFAGSLQIAAAEERQPTLLDQLQQQLVDAESIAELNRSSDDQSLLFQAA 350

Query: 365 DNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
                E   +   +   L    D   +   ++T        +   +        +     
Sbjct: 351 PGPWREVQLVRDRILQWLAADPDLEPRDVLVMTPQIERYAPLLSSVFNDTAAFGVDLPWR 410

Query: 421 LSTTL------HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF----PEKYLSRAKNA 470
           L+          S  + +LL           +  L+ +P  +        E  L      
Sbjct: 411 LTDRSQQSSPGLSMAMFTLLELAATRLTATGLERLLANPALQGQQGLTPEEAVLITQTLQ 470

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                   +       ++ SL                     +        L  D +++ 
Sbjct: 471 RSGFRWGLDARERGGDEVHSLRWCLDRWLLGLVLPVEPGLAPAGAAPFQQELDPDRLVRW 530

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            T L       +          W +L  + LQ +  +                       
Sbjct: 531 WTLLDRVARMLDRLREPRPCHGWVELLQSLLQELFAEGGAWTDEAQSWAAALEEWR---- 586

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
           +      +  +A   ++++   +  ++ +    +S  L I      R +    +IL GL+
Sbjct: 587 LRAHDCPLDLDAAVALEVLQEALSVDSGRFGH-RSGALTISALEPMRAIPHKVVILMGLD 645

Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
              +P+ + +  F     Q  L    +           E     R  +            
Sbjct: 646 SADFPRPSRRPGFHLLEQQRRLGDPRSSDQDRYV--LLEALMSARRHLLI---------- 693

Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
               W  RL   G         ++    L    +L             P     ++    
Sbjct: 694 ---SWCGRLERTGEPQPPAAPVEQWLSVLQ--EQLQRAGASTEGLLVTPAANPLSRENFR 748

Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
             + +        A                       +  +  +         +  +   
Sbjct: 749 PEAPLSCDRRQLEARRCLDAAPASVPNPQGLAWASLWQPEINDDEAEGRDGDDLALDPEA 808

Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
           +   ++Q   +  +   L P   I        +
Sbjct: 809 LLAWLQQPQKAWLQARGLRPGEGIEAVEDLEAL 841


>gi|148543292|ref|YP_001270662.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactobacillus
           reuteri DSM 20016]
 gi|184152702|ref|YP_001841043.1| ATP-dependent nuclease subunit B [Lactobacillus reuteri JCM 1112]
 gi|227364359|ref|ZP_03848452.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactobacillus
           reuteri MM2-3]
 gi|325683558|ref|ZP_08163074.1| ATP-dependent nuclease subunit B [Lactobacillus reuteri MM4-1A]
 gi|251764603|sp|A5VHK1|ADDB_LACRD RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|251764604|sp|B2G531|ADDB_LACRJ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|148530326|gb|ABQ82325.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactobacillus
           reuteri DSM 20016]
 gi|183224046|dbj|BAG24563.1| ATP-dependent nuclease subunit B [Lactobacillus reuteri JCM 1112]
 gi|227070672|gb|EEI09002.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactobacillus
           reuteri MM2-3]
 gi|324977908|gb|EGC14859.1| ATP-dependent nuclease subunit B [Lactobacillus reuteri MM4-1A]
          Length = 1260

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/621 (9%), Positives = 164/621 (26%), Gaps = 52/621 (8%)

Query: 156 IDIIETEEKKWEDLHALKNEKYGM-------WWLLAADFLKIASKYWTERLVELNASSPV 208
           ++ ++      +DL  +               WL     ++     +  RL +    +  
Sbjct: 137 LEELKNANITADDLTDIIYRVKSANDPAANQAWLAKMYDVETIYHAYEARLRDRYIGNSE 196

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
            Y+  +  +  +   +  K    I           +++  +  +     +   LD   P 
Sbjct: 197 LYRQLV--SYLQKSPEVAKMHFFIDRFAQFTANEQQVVDALITNAASTTISLTLDRGYPD 254

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
                    +                   +L  F  + +++VK L NV+     R  V +
Sbjct: 255 QNH-----PNPQELPPKNNLFYSSAMQFHRLWKFGQMHQKEVKVLQNVAFATTPR--VDA 307

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---EN 385
           +            ++ +            ++  +   N   E  ++A  +R  +      
Sbjct: 308 ELQQVDSYFKRYASEPIGPGEREELLDPQNIQFMTTTNRMTELNNVATQIRQLVASGKYR 367

Query: 386 KKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
            +   +++   +  + +         I +       +      ++LT+LL    +     
Sbjct: 368 YRDFLILSRHLDGYQTMIEPVFAAHNIPVFNDHERLMDNHPLVTLLTTLLELPQRGYRTA 427

Query: 445 AIATLVKH----PLAK----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I  L+K     P        G  +   +        +       +    +    +    
Sbjct: 428 DIIQLLKTWLLVPRTGTGDLMGLSDFQAAVFTTENWCLKQAIEGKNAWTTNDPEKIKQLW 487

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN-----STCGNLSIS 551
                N   P ++    E+  +   L+ D +   + P+             +T     ++
Sbjct: 488 QAPGTNLTDPKYEQSRLEKLNDQLALVKDFVANHLLPVFDQFKQAQTGQELATALYQFLA 547

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN------AIEW 605
                                     ++   T   +  + +E     +          ++
Sbjct: 548 AMGVTDRLYAWQQYQSTRDLDLARQPQQVWTTFCQILQEYVEILGQQELRDGTNEVLADF 607

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            +++                  + +  T   +  N   + + G  + V P+    +  L+
Sbjct: 608 SELLQAGFAAAQYSQIPATLDQVVVSETGIVQSENRKVVFMIGSTDDVMPEMQESDSLLT 667

Query: 666 RVMQSDLNLKTAEKY-----------IGQAAHDFEMANGTRH-LIYTRSLRE-NNIPTIA 712
              +  L+    E +           I +    +      +  LI++    + ++     
Sbjct: 668 DQDKDILSAYLDEDFQYLPGTAIDQLIDEPFVHYTGFMNAKEQLIFSAPQSDSDDKELSI 727

Query: 713 SRWLQRLLVLGGTDFFDNLKK 733
           S ++  +    G    +    
Sbjct: 728 SPYMHDMARYFGQPVREYPLA 748



 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 75/589 (12%), Positives = 151/589 (25%), Gaps = 96/589 (16%)

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL-------LVDHILQCITPLVTYK 538
             +L + +   +A       +  WQ   S  D +LA             + + +  L   +
Sbjct: 536  QELATALYQFLAAMGVTDRLYAWQQYQSTRDLDLARQPQQVWTTFCQILQEYVEILGQQE 595

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                +       S+  +      Q   +        +      ++ +     +I +   +
Sbjct: 596  LRDGTNEVLADFSELLQAGFAAAQYSQIPATLDQVVVSETGIVQSENRKVVFMIGSTDDV 655

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG---LNEGVWP 655
                 E   ++T     + +          ++ GT   +L++   +   G     E +  
Sbjct: 656  MPEMQESDSLLTD--QDKDILSAYLDEDFQYLPGTAIDQLIDEPFVHYTGFMNAKEQLIF 713

Query: 656  KNTAKNPF--------LSRVMQSDLNLKTAEKYIGQA------AHDFEMANGT---RHLI 698
                 +              M         E  +  +      A DF  A      R + 
Sbjct: 714  SAPQSDSDDKELSISPYMHDMARYFGQPVREYPLATSKAGQDNAIDFVSAPLATINRLVE 773

Query: 699  YTRSLRENNI------PTIASRW------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
             +R +R+         P +   W      L +L           ++  G         + 
Sbjct: 774  VSRQIRDEQGVGIDRQPVMPVGWQTVAESLVKLAKQWQQSADAKVQAEGISLGQRLSLVA 833

Query: 747  YT-------------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                             Q  Y R  P      +    S S+++    + Y  + +  L+L
Sbjct: 834  AGFHYQNKIDSLGNKLAQALYLRAAPD-DERGRVLYASISQLQDFYINQYEYFLKYGLRL 892

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-------EINHLMKQIIDSHF--- 843
                           GT FH  +   +      N         +      Q+ID      
Sbjct: 893  QKRDEL--TLSNDRIGTFFHKAMETFVTTIRENNLSFADLAHKDNQMQRDQLIDHALVTA 950

Query: 844  -------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS--SIEKIFVNIPAK------ 888
                    +                 I  + L    +       + +   +         
Sbjct: 951  QENQPTLLRLINSSAQAQFQYQQLTAIVKTMLITLCRQAEYTGSQPVKTEVQFGRIGNQQ 1010

Query: 889  -MAIESIG--------IHLTGFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDP 935
               + S+         I+L G  DRID LK G    + + DYK+        +A   +  
Sbjct: 1011 PGNLGSLDYPLKDNHHIYLRGRIDRIDNLKQGNNNFLTVVDYKSSNHLFDLTSAYYGLSL 1070

Query: 936  QLSLEAAALKAGSFS-QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
            QL      L+A     + +  ++A   Y+RL                  
Sbjct: 1071 QLLTYLNGLQANLTELETNNPRLAGALYLRLNNPTIKAAELKKSSLDDL 1119


>gi|304385365|ref|ZP_07367710.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici DSM
           20284]
 gi|304328572|gb|EFL95793.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici DSM
           20284]
          Length = 760

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 82/713 (11%), Positives = 186/713 (26%), Gaps = 134/713 (18%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLL-LSYNLNPP 102
           ++     T +A +E+R     + G+ +       + +   +       D+  + YN    
Sbjct: 59  NILAITFTNKAAREMRERVANLLGEVASEIW---VSTFHALCVRILRRDIEQIGYNRAFS 115

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII--DIIE 160
           +++      L + +L           DL  +  +  P S    I  AKN  D++     +
Sbjct: 116 IADPSEQRTLIKHVLA----------DLNYDPKVYDPRSVLGKISNAKN--DLMTPADYQ 163

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                  D                 + +      +  RL    A       +  +R   +
Sbjct: 164 ENASNPHD-----------------EAVGKIYDEYQRRLKANQALDFDDLIMQTIRLFEQ 206

Query: 221 HLMKGT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                         I +     +  A  +L++ +A       V+   D       W    
Sbjct: 207 SPETLQFYQNKFHYIHVDEYQDTNQAQYQLVTMLAKGFRNLCVV--GDSDQSIYGWRGAD 264

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++     S+                               +  +              +
Sbjct: 265 MQNILNFESDYPD--------------------------AHTVMLEQNYRSTQNILNAAN 298

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSALI 392
                N +    ++       + ++        +E   I   +R  ++EN       A++
Sbjct: 299 DVIANNVERKPKQLWTDNAEGAKISYYRGQTGNDEVHFIVQQIRKQIEENNFDYGDFAIL 358

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R ++    +  I   +  G           + S L  I    D M+   ++  
Sbjct: 359 YRTNAQSRLIEDTFVKANIPYTMVGGHKFYDRKEIRDVLSYLTLIANEEDSMSFERVINE 418

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P    G       +A                                        W    
Sbjct: 419 PKRGIGATSMAKLQAFADEN----------------------------------SWSLLQ 444

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH--- 569
           +  + ++A  +       I            +   LSI++ T+  +         E    
Sbjct: 445 AARNVQIANGIARRTRNAIEDFAKTIDALRKSAEFLSITELTETLLDKTGYRAALEQTRT 504

Query: 570 -RKLPNLWFEEEGKTLSSLFSKIIETGSCIKA----NAIEWIDIITRLIDGETVKPKIEK 624
                 L    E  T++  F +  +      A    + +  +D +  L          E+
Sbjct: 505 MEAEARLENINEFLTVTKQFDEQNDAEGTEVADENGDNVRLVDFLADLALVSDQDDVEEE 564

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
            S + ++    ++ L F  + L G+ EGV+P + A                  ++   + 
Sbjct: 565 PSAVTLMTLHAAKGLEFPVVFLVGMEEGVFPLSRA--------------ATDPDELEEER 610

Query: 685 AHDFEMANGT-RHLIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLK 732
              +       + L  T +             ASR++  +      D  + ++
Sbjct: 611 RLAYVGITRAQKKLYLTNAYSRMLYGRTQNNPASRFIGEISAEYLQDENEQVQ 663


>gi|328911095|gb|AEB62691.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus
            amyloliquefaciens LL3]
          Length = 1234

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 108/893 (12%), Positives = 231/893 (25%), Gaps = 136/893 (15%)

Query: 167  EDLHALKNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            E L  L       +     +           Y    L         G +   + +EA   
Sbjct: 343  ETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAR---DEEGRR---VPSEAAVY 396

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +     +++     +      ++  V + +     +    D       +          
Sbjct: 397  YQDQFHEVLVDEYQDTNLVQESILQLVKSGNEESGNLFMVGDVKQSIYRFRLAEPLLFLG 456

Query: 282  TSSNTT--YSTHPQ-----YSLAKLLDFLDIKREDVKRL-GNVSNEMYGRSMVISKSFLP 333
                 T       Q      +     D LD      K+L G    E+        K    
Sbjct: 457  KYKRFTEDGEGAGQKIDLNQNFRSRSDILDSTNFLFKQLMGGKIGEVDYDEQAALKLGAS 516

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM------------- 380
               +D   T++L     +      D    E  +   EA +IA  +R              
Sbjct: 517  YPPNDAAKTELLLIDSADDADSPEDAEDFETVHW--EAKAIAAEIRKLVSSPFKVYDGKT 574

Query: 381  --SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                +   +   ++      A ++  EL   GI +  +        +  +   S+L  I 
Sbjct: 575  KTHRNIQYRDIVILLRSMPWAPQLMEELKNQGIPVYANLTSGYFEAVEVAAALSVLKVID 634

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                 + +A++++ P+      E  L R +               +      L       
Sbjct: 635  NPYQDIPLASVLRSPIVGCDENELALIRLEKKKAPFYEALKAYIANGDRHDDLYQKL--- 691

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
            +     +  W+S  +       +  V                K        + D  +   
Sbjct: 692  RIFYDSLQKWRSFSTNHSVSELIWEVYRDTGYFDYAGGMPGGKQRQANLRVLYDRARSYE 751

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE-- 616
                       R +  +    +    +   S+  +    +  ++ + ++       G   
Sbjct: 752  ATAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFTAGLGR 811

Query: 617  --------------------------TVKPKIEKSSTLFILGTLESRLL----NFDTLIL 646
                                       ++        + +   +   LL        + L
Sbjct: 812  SFNMMDLNKSYLLDKELGFGTKYIHPELRISYPTLPLVAMKKKMRRELLSEELRVLYVAL 871

Query: 647  GGLNEG------VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE--MANGTRHLI 698
                E          +      + ++  ++D  L   ++Y   +  DF          + 
Sbjct: 872  TRAKEKLFLVGSCKNREKQLAKWQAQADRADWLLSEFDRYQASSYLDFIGPALIRHSDME 931

Query: 699  YTRS---LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP--- 752
              R+   L   +I    +R+  R+L        D+ ++R +      + + +    P   
Sbjct: 932  AHRAPGLLAPEDIAHDPARFHIRMLQQS-ELLEDSPEERAEEKSKRLKAIQHGEPIPDSF 990

Query: 753  --------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL--------DFI 796
                      +   P+  L A     S SE+K+          R ++K            
Sbjct: 991  SFDDQARRLLEWEYPYRKLTAIRTKQSVSELKRKQEYEDEYSGRSLIKPSGDTLLYKRPG 1050

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
               KK     ++GT  H ++  +    +     E    ++ + +     E     ID   
Sbjct: 1051 FMMKKGLTAAEKGTAMHTVMQHIPLTHV-PTAEEAERTVRMLYEKELLTEEQQDAID--- 1106

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGFADRI 905
                 ++   F     K      +I   +P  MA+               + + G  D +
Sbjct: 1107 ---IDEVIQFFGTEIGKDLVGALRIDREVPFSMALPASEVYKDAETAGEPLLVQGIIDCL 1163

Query: 906  DLLKSGFVDITDYKT------------GDNPKKETAQKLIDPQLSLEAAALKA 946
                 G + + DYKT            G  P     QK  + Q+ L   A++ 
Sbjct: 1164 YETADG-LYLLDYKTDRIEGKFRNGFEGAAP---ILQKRYETQIELYTKAVEQ 1212


>gi|298674325|ref|YP_003726075.1| UvrD/REP helicase [Methanohalobium evestigatum Z-7303]
 gi|298287313|gb|ADI73279.1| UvrD/REP helicase [Methanohalobium evestigatum Z-7303]
          Length = 1085

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 100/304 (32%), Gaps = 29/304 (9%)

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
           D L   G +E     +T  +    R  ++       +  I +           R L+   
Sbjct: 720 DFLYDIGFDESFEDCDTLDDVTFYRDTENKAKELVMDDDIEREK------QRRRELLM-- 771

Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
               +   T   + L     L   +  D L++    +       + +      K  K  P
Sbjct: 772 DSMGSGNITEPLKHLLVYQELVNKEDRDYLEEIKSNWSKINPLPEASEILDSCKSSKCSP 831

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
             +    ++S+S IK     P     + +L++      K   +  + G+  H ++   +K
Sbjct: 832 KFKPDNLSFSYSSIKTYEECPKKYELQELLRMPDRSSEKLG-EAANIGSFVHKVLEIGVK 890

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
           +++     E    +  I+    EK    P   +I     + +  +F   E          
Sbjct: 891 RKV-----ETKDQLYNIVYELAEK----PDWKMIDLKKTYTLFDTF--WERHKDKIHYNF 939

Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLK--SGFVDITDYKTGDN-PKKETAQKLIDPQLS 938
            V     + I   G +  GF DR+D L      V++ DYK G   P  E   +    QL 
Sbjct: 940 AVEKRFSVPI--GGFYFKGFIDRVDFLSGCDTDVEVIDYKAGKTDPPTEDRAR----QLL 993

Query: 939 LEAA 942
           L A 
Sbjct: 994 LYAY 997


>gi|170739391|ref|YP_001768046.1| UvrD/REP helicase [Methylobacterium sp. 4-46]
 gi|168193665|gb|ACA15612.1| UvrD/REP helicase [Methylobacterium sp. 4-46]
          Length = 789

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 90/775 (11%), Positives = 181/775 (23%), Gaps = 122/775 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E++     + G     +P + +   +  +                  
Sbjct: 81  DILAVTFTNKAAREMKERIGGLIGAAGEGMPWLGTFHAIGTKI----------------- 123

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +   +         W A+ LA  ID  +     
Sbjct: 124 LRRHAELVGLRSDFTILGTDDQLRLLKQVIEA--AGIDEKRWPARGLAQAIDGWKNRGLA 181

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + + A      G                + ERL  LNA       +  ++   E+    
Sbjct: 182 PDQVPA------GEAGAFGFGKGGPLYAAYQERLATLNAVDFGDLLLLCLKLWRENPDIL 235

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +  A    +  +A        +   D       W      +  
Sbjct: 236 ASYQDRFRYILVDEYQDTNVAQYLWLRLLAQGRRNVCCV--GDDDQSIYGWRGAEVDNIL 293

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G V   +               T    
Sbjct: 294 RFEHDFP--------------------------GAVVVRLERNYRSTGHILAAAATLIAH 327

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALITADRNL 398
           N   L   +         V +  A +  EEA  I   +      +    + A++      
Sbjct: 328 NEGRLGKTLRTEAGAGEPVTVTGAWDSEEEARLIGETIEGLQRQEHPLAQIAVLVRTSAQ 387

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            R V+    + G+   +  G               L       D +A   +V  P    G
Sbjct: 388 MREVEDRFVQLGLPYRVIGGPRFYERAEVRDALGYLRLTANGADDLAFERIVNTPKRGLG 447

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                                   +             +EE K 
Sbjct: 448 DATLQALHGV---------------------------ARRRAVPLLHAARLIVETEELKP 480

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                +  ++QC          +        I + +  T    +    D   +L NL   
Sbjct: 481 KPRSTLRALVQCFDRWAKLLEGRPHAEVAQIILEESGYTEMWQKERTADAAGRLENL--- 537

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                      + +E    + A       ++                  + ++    ++ 
Sbjct: 538 -------KELVRSLEEFPDLPAFLEHIALVMDANEAEG--------GDRVSLMTLHAAKG 582

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L FDT+ L G  +G++P   A +         +      E+    A      A     + 
Sbjct: 583 LEFDTVFLPGWEDGLFPNQRALD---------ESGRAGLEEERRLAHVGLTRARKRAKIS 633

Query: 699 YTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
           +  + R +     T+ SR++  L      +   ++ +    +     + D     P    
Sbjct: 634 FAVNRRIHGLWSSTMPSRFIDEL-----PEASVSVIEAPANFSHGPSRFDR-QATPFGSS 687

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                   AQ  T                +             +        GT 
Sbjct: 688 YATPGWQRAQAATAGQERFGGQGRPGEPRFGEGRGARGAPRQIEGTLVAKSTGTA 742


>gi|120613110|ref|YP_972788.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
 gi|120591574|gb|ABM35014.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
          Length = 689

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 82/728 (11%), Positives = 188/728 (25%), Gaps = 108/728 (14%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R    +    ++    ++ +   +       D  +   L P  S 
Sbjct: 50  RIAAITFTNKAAAEMRER-AQHLIGRAAKDVLVCTFHALGVRMVREDGHV-LGLKPQFSI 107

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL--AKNLADIIDI----- 158
           +      A  +            D+         IS      L  A+ LA   D      
Sbjct: 108 LD-----ADDVTGIIKDAAGGTTDIATARQWQWTISAWKNAGLDSAQALAQAKDDNERSI 162

Query: 159 ---IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
              ++  E++     ++  +      L            W + L                
Sbjct: 163 AVIMQRYEERLTAYQSVDFDDLIGMPLRLLRDFPEVRAKWQQSL---------------- 206

Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                       G +++     +      L+  +             D       W   T
Sbjct: 207 ------------GHVLVDEYQDTNATQYELLKLLVGERGR--FTAVGDDDQSIYGWRGAT 252

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
             +            +PQ  + KL                            S      +
Sbjct: 253 LDNLKKLPV-----DYPQLKVIKL---------------------EQNYRSTSAILRAAN 286

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA-ISIAIA--LRMSLDENK--KKSA 390
                N  +    + +       V +++ADNE  EA  ++A    LR +L+     K  A
Sbjct: 287 NVIQPNPKLFPKTLFSELGEGEPVRVVDADNEEHEAERAVARIQSLRATLNPQPAWKSFA 346

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++    + A+  +  L +  +   +S G           L +        +D  A    +
Sbjct: 347 ILYRANHQAKPFEKALRKANVPYKVSGGTSFFDRAEIKDLCAWFRLWINNDDDPAFLRAI 406

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P    G          +    V++ G   ++ +  +          +           
Sbjct: 407 TTPKRGIGHTTLAKLGEFSTQHKVSMFGALFNHMLEAVLPRKAHESVMEFGRYINYLEYK 466

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                  E A   +   L+ I        +++S     + + WT +   C         +
Sbjct: 467 ARHTHGAEDARTFMTDWLKEIGYEQYLYDSEDSETV--AGARWTNVLEFCDWMSQRAGGQ 524

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
                                   G+ +       +++   +    T+  + +    + +
Sbjct: 525 IDDT-------------------AGAVVAKETKSLLEVAQTIALLSTISEREKDEDLVTL 565

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                S+ L +  ++L G+ EG+ P     +       Q  ++  T ++   +    +  
Sbjct: 566 STLHASKGLEWPHVMLVGVTEGMLPFKLDDD----EGRQQKVSEDTLQRLQEERRLMYVG 621

Query: 691 ANGTRH-LIYTRSLRENNI----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
               +  L  + + R            SR++  + +   T   D  +K      ++  + 
Sbjct: 622 ITRAQRSLAVSWTKRRKKGREMVAAQPSRFIAEMGLDKNTAREDPREKLRALRAEFAARK 681

Query: 746 DYTTKQPH 753
                   
Sbjct: 682 AQPAPTAP 689


>gi|301052778|ref|YP_003790989.1| ATP-dependent nuclease subunit A [Bacillus anthracis CI]
 gi|300374947|gb|ADK03851.1| ATP-dependent nuclease, subunit A [Bacillus cereus biovar anthracis
            str. CI]
          Length = 1241

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 98/899 (10%), Positives = 213/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKL--------TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              + D  +             L+ +     R          G+    +    I     ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 600  ANAIEWIDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL- 638
               +    +                              + K    S L I   ++  L 
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 639  ---LNFDTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
               +    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 927

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 928  APSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      Q   K       +       + S   +                ++ +    R 
Sbjct: 988  EKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             +K       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIKTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKS 1218


>gi|15826976|ref|NP_301239.1| ATP-dependent DNA helicase [Mycobacterium leprae TN]
 gi|221229454|ref|YP_002502870.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
 gi|13632801|sp|Q9CD72|PCRA_MYCLE RecName: Full=ATP-dependent DNA helicase pcrA
 gi|13092523|emb|CAC29661.1| putative ATP-dependent DNA helicase [Mycobacterium leprae]
 gi|219932561|emb|CAR70246.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
          Length = 778

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 83/697 (11%), Positives = 177/697 (25%), Gaps = 90/697 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITG---KKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
           + +     T +A  E+R     + G     S     + +              L      
Sbjct: 66  SQILAITFTNKAAAEMRERVARLVGDHTGPSMW---VSTFHSTCVRILRNQASL------ 116

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            +  +     +   +   R+ L  I +D+  +     P   ANAI            ++ 
Sbjct: 117 -IGGLNSNFSIYD-VDDSRSLLQMIGQDMGLDIKRYSPRLMANAISN----------LKN 164

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE--RLVELNASSPVGYQIALMRAEA 219
           E    E   A  +          A       +       L   +        +      A
Sbjct: 165 ELIDAESAVANLSSDTDDLARTVATVYGEYQRRLRTANALDFDDLIGETVGILQAFPQIA 224

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA--------IVLPGLDCHIPTAIW 271
           EH  +     +++     +  A   L+  +  H             +    D       +
Sbjct: 225 EHYRR-RFRHVLVDEYQDTNHAQYVLVRELVGHGARNSPDDMPPGELCVVGDADQSIYAF 283

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
              T  +      +   +T            L+      + + + +N +  R+       
Sbjct: 284 RGSTISNIEDFERDYPDTTTIL---------LEQNYRSTQNILSAANSVIARNFGRRDKR 334

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKK 388
           L  D                       +    +DNE +EA  IA  +   +   +     
Sbjct: 335 LWTDAGKGEL-----------------IVGYVSDNEHDEAKFIADEIDALVGGGEITYDD 377

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            A++    NL+R ++      GI   +  G     +     L + L  +    D +++  
Sbjct: 378 VAVLYRANNLSRSLEEVFIPTGIPYKVVGGFCFYESKEIRDLIAYLRVLDNPGDAVSMRR 437

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
           ++  P    G   +            +                             VP  
Sbjct: 438 ILNTPRRGIGDRAEACVSVYAENTGTSFAD-----------------ALQAVAEGKVPML 480

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
            +R  +       LL D   +    L     +     G L   + +       +   L+E
Sbjct: 481 NTRSVKAIAGFVALLDDLRCRVDDDLGELVESVLERSGYLRELESSTDPQELARLDNLNE 540

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                + +  E+    +   S        +         +    +  +T +     S  +
Sbjct: 541 LVSFAHEFSTEQANAAALAKSLHTPEDEDVPDTGALAAFLEKVSLMSDTDQIPENNSGVV 600

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            ++    ++ L F  + + G  +G+ P             +  L      +   +     
Sbjct: 601 TLMTLHAAKGLEFPVVFVTGWEDGMLPHMRTLGDPTELSEERRLAYVGITR--ARQRLYL 658

Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             A        TRS     I    SR+L+ +      
Sbjct: 659 SRA-------ITRSSWGQPILNPESRFLREIPPELID 688


>gi|167769939|ref|ZP_02441992.1| hypothetical protein ANACOL_01280 [Anaerotruncus colihominis DSM
           17241]
 gi|167667930|gb|EDS12060.1| hypothetical protein ANACOL_01280 [Anaerotruncus colihominis DSM
           17241]
          Length = 788

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 76/731 (10%), Positives = 188/731 (25%), Gaps = 123/731 (16%)

Query: 17  FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76
           F  E      +  +   F       ++  ++     T +A  ELR     + G  ++ + 
Sbjct: 83  FLEEYAAG-ESWDMDRAFSLIRNRTVMPWNILAITFTNKAAGELRDRLAAMLGSVASDV- 140

Query: 77  IIKSLGDVVEEKFTADLLL-SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
              +           ++    Y  +  + +    +   RLI     +L    K   P S 
Sbjct: 141 NASTFHSACVRILRREIERIGYGRSFAIYDTDDSI---RLIKAALKELNVDEKRFSPRSI 197

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
           LS              +    D + T      D  A   E Y          +    + +
Sbjct: 198 LS-------------EIGRAKDELRT----PADFAATVGEDYR------LQVVSKVYERY 234

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKG-----TKGPIIIAGSTGSIPATARLMSTVA 250
             +L   NA       +  +R   ++             +++     +  A   L+  +A
Sbjct: 235 QRQLENANAVDFDDIIMLTVRVFQQYPDALETYRRRYRYVMVDEYQDTNHAQFELVRLLA 294

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
           +      V+   D       +   T ++                     +  L+      
Sbjct: 295 SESGNLCVV--GDDDQSIYKFRGATIENILQFEDTFPG---------ARVFRLEQNYRST 343

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
             + + +N +   +                 T      +         V +  A +E EE
Sbjct: 344 GTILDAANAVIEHN-----------------TARKGKTLWTQNDTGGKVRVYRAADEGEE 386

Query: 371 AISIAIALRMSLDENKKKS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
           A  +   ++ ++    + +   ++      ++ ++  LT+  I   I  G+         
Sbjct: 387 ARFLCDTIQENVKNGARYADHVVLYRMNAQSQAIERGLTKAAIPYRIIGGLRFYERKEIK 446

Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            + + L+ I    D + +  ++  P  K G                              
Sbjct: 447 DVVAYLSVINNQADTLRLRRIINEPKRKIGESTIAA------------------------ 482

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                  +A          +      ++          ++   + +       +    + 
Sbjct: 483 -------VAELAAGEGKTVFDVLAHADEYASLGRKAQDLMSFASMIQKLVDLADKVLLDE 535

Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            +    + T             +      EE   T+     +  E               
Sbjct: 536 LLDTLLEETGYLRMLQAQGPEGQARIENIEELKSTMHRYEEETDE---------PSLSGF 586

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
           +  +     +      +  + ++    ++ L FD + + G  EG++P   A N       
Sbjct: 587 LEEISLYTDLDNYDSAADMVVLMTMHSAKGLEFDYVFVVGAEEGLFPGMQAMNN------ 640

Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRE----NNIPTIASRWLQRLLVLG 723
                    E+   +    +       + L  + + +       +    SR+L  +    
Sbjct: 641 --------PEQIEEERRLAYVSITRAKKQLYISTAAQRMLFGQTMRNRPSRFLGEVPQQL 692

Query: 724 GTDFFDNLKKR 734
                  + +R
Sbjct: 693 CEVTDQTVLRR 703


>gi|229114675|ref|ZP_04244089.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-3]
 gi|228668740|gb|EEL24168.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-3]
          Length = 1195

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 95/893 (10%), Positives = 215/893 (24%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E        P   
Sbjct: 292  DFQDMHPVLEKLVKLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENDEVKPSAV 351

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 352  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 411

Query: 279  TNITSSNTTYSTH-------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 412  FLGKYKRFTQEGSGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 471

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 472  GASYLIGEDVAAELLCIQQTEEEVLEGEEGTEVEKAQLEARLMAQRIKAMVDSGYEVYDR 531

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 532  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 591

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 592  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----HGKKGSFYEVMSSFLKGAPLEEEQE 647

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL------QCITPLVTYKTNKNSTCGNLSI 550
              +K        Q       ++    L+  +         +  L   K  + +       
Sbjct: 648  LHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 707

Query: 551  SDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            +   +          L+ +     R          G+    +    I     ++   +  
Sbjct: 708  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 767

Query: 606  IDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL----LNF 641
              +                              + K    S L I   ++  L    +  
Sbjct: 768  AGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 827

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 828  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 887

Query: 694  TRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
             R       L + +IP         W   ++        + +++  Q  L+  R+     
Sbjct: 888  HRDSEILLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 947

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARRILKLDF 795
             Q   K       +       + S   +                ++ +    R  +K   
Sbjct: 948  LQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIRKLRAPIKTRP 1007

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P    ++++ I     KE L    +  
Sbjct: 1008 RFMEKKGLTYAERGTAVHTVMQHV-----DLKKPITVEVLQEQIAGMVNKELL--TFEQA 1060

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI------------ESIGIHLTGFAD 903
                  K+   F     K   + + +   +P  M +                I + G  D
Sbjct: 1061 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGNSGESILVQGVID 1120

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1121 CMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKS 1172


>gi|326559747|gb|EGE10157.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 7169]
          Length = 689

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 75/689 (10%), Positives = 177/689 (25%), Gaps = 108/689 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPV 103
            +T    T +A +E++S   +I   + +    + +      +    +L  +        +
Sbjct: 65  RITAVTFTNKAAREMKSRVQKILSHEKSRGLTVSTFHQFGLQFLRYELKHTSLKPNFSIL 124

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                   LA L+   R+ L    +       +       N +   K+ A+ +D      
Sbjct: 125 DADDCQRLLAELM--VRDNLSGAERRELVHEAIKKISDWKNDLIAPKDAAETLD------ 176

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              EDL                       + +   L   NA          +R   E   
Sbjct: 177 -DPEDLG-----------------FVHLYELYERNLRAYNAVDFDDLIAMPVRILRESHE 218

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +  A   L+  +        V+   D       W     ++
Sbjct: 219 VKDKWQNRIRYLLVDEYQDTNTAQYELIKLLVGRLGRFTVV--GDDDQSIYTWRGAKPEN 276

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
             +   +              +  L+        +   +N +   +  + +  L  D  D
Sbjct: 277 MALLKQDFPNLE---------VVKLEQNYRSTNHILGAANAVIANNEHMFEKSLWSDKGD 327

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITAD 395
                               + +I  +N+ +EA  +A  +      N +     A++   
Sbjct: 328 G-----------------EKIRVITCNNDFDEAERVAKEILTHRLRNNQTWDRYAVLYRS 370

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              AR ++ +L +  I   +S G           L   L  I   +D  A   ++  P  
Sbjct: 371 NFQARALEAQLRQLEIPYKLSGGTSFFARTEIKDLMGYLRIIINPDDDAAFLRVINTPKR 430

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G                                     +        V       +  
Sbjct: 431 GIGSVTLEKLGL--------------------FAQHCGTSLLGACTRAGVKDALGAKAGA 470

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             E     +++    +                          +  ++    +  ++   L
Sbjct: 471 IIESFGEFINYYTHQLHDNSDPMPLVRQMITE-------TGYIDYVKESSKNPQQEKGRL 523

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              E      +      +       +A+    ++  +++ +    + E ++ + ++    
Sbjct: 524 DNIEALYLSIAALINRADDEHDKTIDAVIRKMVLLDMLEQQ---QEEENTNKVNLMTLHA 580

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L FD + + G  E +       N  +S  +         E+           A    
Sbjct: 581 AKGLEFDYVYIIGCEEKL---LPHVNSIMSANI---------EEERRLMYVGITRAKSEL 628

Query: 696 HLIYTRSLRENN--IPTIASRWLQRLLVL 722
            L+  +  R          SR+L  L   
Sbjct: 629 TLLLCKQRRSGADFKAVTPSRFLDELPAE 657


>gi|228913817|ref|ZP_04077442.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar pulsiensis BGSC 4CC1]
 gi|228845756|gb|EEM90782.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar pulsiensis BGSC 4CC1]
          Length = 1240

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 96/899 (10%), Positives = 213/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 337  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 396

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 397  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 456

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 457  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 516

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 517  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 576

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 577  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 636

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + + +    
Sbjct: 637  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSTFLKGAP 686

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 687  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 746

Query: 548  LSISDWTKL--------TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              + D  +             L+ +     R          G+    +    I     ++
Sbjct: 747  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 806

Query: 600  ANAIEWIDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL- 638
               +    +                              + K    S L I   ++  L 
Sbjct: 807  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 866

Query: 639  ---LNFDTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
               +    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 867  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 926

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 927  APSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 986

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      Q   K       +       + S   +                ++ +    R 
Sbjct: 987  EKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1046

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1047 PIQTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL- 1100

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1101 -TFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1159

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1160 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKS 1217


>gi|297622053|ref|YP_003710190.1| DNA helicase [Waddlia chondrophila WSU 86-1044]
 gi|297377354|gb|ADI39184.1| DNA helicase [Waddlia chondrophila WSU 86-1044]
          Length = 712

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 62/692 (8%), Positives = 179/692 (25%), Gaps = 121/692 (17%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A  E++    +I          I +   +        +           
Sbjct: 51  SQILGLTFTNKAAGEMQERIRKIANSHVL----ISTFHSLGARILRESIHEL-------- 98

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
             +    +     +    L   +++L        P               +I   + +  
Sbjct: 99  GYRSDFTIYDEDDVL-KLLKACLEELKIRDKKMEPKVF----------RSLISKAKNQLL 147

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             + + + +++            L +  + + ERL E NA         +++   E    
Sbjct: 148 GPDQVQSSQSKDPADMA------LPMVYRKYQERLKEYNALDFDDLLFLVVKLFRECPEV 201

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     ++I     +  A   ++  +        V+   D       W     ++ 
Sbjct: 202 LKGYQDRWSHLLIDEYQDTNHAQYEIVCKLVERTKNLCVV--GDPDQSIYSWRGANIQNI 259

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
               ++   +          +  L+        + + +N + G +    +  L       
Sbjct: 260 LNFENDFAGAK---------VVRLEQNYRSRANILDAANHLIGFNQQRFEKNLWSALGPG 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396
                              +     D++R E+  +A  +R   +E     ++  +     
Sbjct: 311 -----------------EKIKHYTGDSDRNESQFVADTIRYFHEEKGIPYQEMVIFYRTN 353

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R  +  L    I   I  GI          + + L   +  +DF++    +  P   
Sbjct: 354 FQSRAFEDRLLSSRIPYVIVGGISFYQRKEIKDVLAFLRMTYSDSDFISFQRTINLPR-- 411

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                                          L +  +++I        +   +   +  D
Sbjct: 412 -----------------------------RGLGNATIEKIRLGATQEGMTILEYCQALVD 442

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
             +++ +     + +   ++            S+ +     V     +            
Sbjct: 443 GGVSLRMTTKQKEGLEGYLSMIRKLKRIYAECSLKELVIAAVEETGYLNHLSEDPETVDD 502

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS-STLFILGTLE 635
            +     L +   +  +       ++ E  D +  L    ++          + ++    
Sbjct: 503 RKANLDELRTKAMEWEQER-----DSAELADFLEELSLKSSLDEADAGLVDRVNLMTIHN 557

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
            + L +  + L G+ E ++P   ++               + E    +    +      +
Sbjct: 558 GKGLEYTLVFLVGMEEDLFPHANSRG--------------SQEALEEERRLCYVGMTRAK 603

Query: 696 H-LIYTRSL----RENNIPTIASRWLQRLLVL 722
             L  T +              SR+L+ + + 
Sbjct: 604 EYLYITDARFRYLWGQARTQRPSRFLKEIPIE 635


>gi|111220613|ref|YP_711407.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111148145|emb|CAJ59814.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 847

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 78/733 (10%), Positives = 182/733 (24%), Gaps = 95/733 (12%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +        + P     +     T +A  E+R     + G ++  +  + +    
Sbjct: 85  VLAHRIAYLLAARGVRP---GEILAITFTNKAAAEMRERVGALVGPRARAM-WVSTFHSA 140

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                 ++                     RL       + D        + ++  +    
Sbjct: 141 CVRILRSEAK-------------------RLGYGSSFSIYDAADAQRLITLVTRDLDLDP 181

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
               A+ LA  I  ++ E   WE       ++           L      + +RL + NA
Sbjct: 182 KRHPARGLAAQISNLKNELIDWEA----ARDRASSHQERT---LAEVYAAYQQRLAQANA 234

Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA--- 256
                  +  +             +     +++     +  A   L+  +   P  A   
Sbjct: 235 LDFDDLIMMTVNLLQAFPDVAEHYRRRFRHVLVDEYQDTNHAQYVLVRELVGQPAHADAD 294

Query: 257 --IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             +  PG       +     +             +    Y+         ++ E+     
Sbjct: 295 ADVPGPGAAADAAVSTVTWASGAVPPAELCVVGDADQSIYAFRGANIRNIVEFEEDFP-D 353

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                +              +    RN      ++ +       +    ADNE +EA  +
Sbjct: 354 AAVILLEQNYRSTQTILSAANAVIARNNQRKAKRLWSDAGDGEKIVGFVADNEHDEAAFV 413

Query: 375 A---IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
           A     L  +        A+       +R  +    R G+   +  G+          L 
Sbjct: 414 AEEVDRLTDAGLARPADVAVFYRTNAQSRVFEEIFVRVGLPYRVVGGVRFYERREIRDLL 473

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
           + L  +   ND + +  ++  P    G   +        +E +           +   + 
Sbjct: 474 AYLRVLANPNDTVNLRRILNVPRRGIGDRAEAALAGFAEVERIGFAAALERVGEVPGIAT 533

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
              +   +                                  L+       +      + 
Sbjct: 534 RSAKAVRE-------------------------------FAALLAELRAIEADGPVAVVE 562

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
              + T    + +  D       +   +E   +   F++    G        E+++ ++ 
Sbjct: 563 AVLERTGYLSELLAEDTVEAQGRVENLQELVGVVQEFTERNPQG-----TLAEFLEQVSL 617

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
           + D + V         + ++    ++ L F  + L GL +GV+                 
Sbjct: 618 VADADQVPTDDGSDGVVTLMTLHSAKGLEFPVVFLTGLEDGVF------------PHLRT 665

Query: 672 LNLKTAEKYIGQAAHDFEMANGTR---HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
           L   T  +   + A+       +R        RS          SR+L  +         
Sbjct: 666 LGDPTQLEEERRLAYVGVTRARSRLYLTRSVVRSAWGQPAYNPPSRFLGEVPDALVDWRR 725

Query: 729 DNLKKRGQCYLDW 741
                       W
Sbjct: 726 LVEAAPEPAARPW 738


>gi|254558836|ref|YP_003065931.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           DM4]
 gi|254266114|emb|CAX21866.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           DM4]
          Length = 795

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 83/708 (11%), Positives = 185/708 (26%), Gaps = 115/708 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E++     + G     +P + +   +  +                  
Sbjct: 93  DILSVTFTNKAAREMKHRIGGLIGPAGEGMPWLGTFHAIGTKI----------------- 135

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +  +    +     W A++LA  ID  +     
Sbjct: 136 LRRHAELVGLKSDFTILGTDDQLRLMKQ--VISDQNIDEKRWPARSLAHTIDGWKNRGLS 193

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK- 224
            E +      +   +       L  A +     L  ++    +   + L R   + L   
Sbjct: 194 PEQVP---PGEAQSFAFGKGGQLYAAYQARLATLNAVDFGDLLLLCLKLWRENPDILANY 250

Query: 225 -GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                 I++     +  A    +  +A        +   D       W      +     
Sbjct: 251 QDRFRYILVDEYQDTNVAQYLWLRLLAQARKNVACV--GDDDQSIYGWRGAEVDNILRFE 308

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +                            G     +                   +N  
Sbjct: 309 HDFP--------------------------GATVVRLERNYRSTGHILAAASGLIAKNEG 342

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLARR 401
            L   +    +    V +  + +  EEA  +A ++           + A++       R 
Sbjct: 343 RLGKTLRTEDEAGEPVTVTGSWDSEEEARQVAESIESLQRRGHALSEIAVLVRISAQMRE 402

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           ++    + G+   +  G             + L       D +A   +   P    G   
Sbjct: 403 IEDRFVQVGLPYRVIGGPRFYERAEIRDALAYLRVTMNGADDLAFERIFNTPKRGLGDAT 462

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                A                     ++  +  +A  +             +E K  A 
Sbjct: 463 LQTLHAFA-------------------RADRIPLLAAARKLIET--------DELKPRAR 495

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            ++  +++  T  V     K       +I + +  T    ++   D   +L NL      
Sbjct: 496 SMLRGLVESFTRWVRLVETKPHPEVAQTILEESGYTEMWQKDRSADAAGRLENL------ 549

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
                 F + +E    + A       ++                  + ++    ++ L F
Sbjct: 550 ----KEFVRSMEEFPDMAAFLEHVSLVMEASEAEGA--------DRVSLMTLHAAKGLEF 597

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
           DT+ L G  +G++P   A +         +      E+    A      A     L +  
Sbjct: 598 DTVFLPGWEDGLFPNQRAID---------ESGRAGLEEERRLAHVGLTRARKRAKLSFAV 648

Query: 702 SLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
           + R +     TI SR++  L          ++ +    +     + D 
Sbjct: 649 NRRIHGLWSSTIPSRFIDEL-----PPQAVDVVEAPAHFSAGASRFDR 691


>gi|196044179|ref|ZP_03111415.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB108]
 gi|196024818|gb|EDX63489.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB108]
          Length = 1241

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 97/899 (10%), Positives = 212/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKL--------TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              + D  +             L+ +     R          G+    +    I     ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 600  ANAIEWIDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL- 638
               +    +                              + K    S L I   ++  L 
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 639  ---LNFDTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
               +    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 927

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                           L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 928  APSLYRHHDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      Q   K       +       + S   +                ++ +    R 
Sbjct: 988  EKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             +K       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIKTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKS 1218


>gi|56477159|ref|YP_158748.1| hypothetical protein ebA3053 [Aromatoleum aromaticum EbN1]
 gi|56313202|emb|CAI07847.1| similar to ATP-dependent DNA helicase,putative replication protein
           [Aromatoleum aromaticum EbN1]
          Length = 660

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 69/681 (10%), Positives = 168/681 (24%), Gaps = 120/681 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL-SYNLNPPVSNIQR 108
              T +A +E++     + G +      + +   +  +    +           + +   
Sbjct: 55  ITFTNKAAKEMQERVAGLMGGRVPGGLTVCTFHALGVKIVRQEAKHCGLKPQFSILDASD 114

Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN--LADIIDIIETEEKKW 166
            +++   I    +K              +  ++P  A  LA N   +    +    E+  
Sbjct: 115 TVQIVADITRDADKARSKAMQWQISGWKNAMVTPEQAAQLADNELASAAALLYAEYERTL 174

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
               A+  +      +   D      + W  +L                           
Sbjct: 175 RAYQAVDFDDLISLPVRLFDEHPEVRERWQNKL--------------------------- 207

Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
              +++     +  A   L+  +A            D       W     ++  +     
Sbjct: 208 -RYLLVDEYQDTNRAQYTLLRHLAGARGA--FTAVGDDDQAIYAWRGADVENLKLL---- 260

Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
               +P+  + KL                             +     +T    N  + E
Sbjct: 261 -QQDYPKLKVIKL---------------------EQNYRSSKRILTAANTLIANNEKLFE 298

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMS---LDENKKKSALITADRNLARRVK 403
            ++ +       V +    +   EA  +A  +              A++    + AR ++
Sbjct: 299 KRLWSEHGAGEQVTVTACRDAEHEAEWVASKISAHKFEHRTKFSDYAVLYRGNHQARLIE 358

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
            +L    I   IS G           L + L  +   +D +A    +  P    G     
Sbjct: 359 QQLRNQKIPYVISGGQSFFDKAEIRDLIAYLRLLMNEDDDLAFIRAITTPRRGIGAGTLE 418

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
              +      V+L                                           A  L
Sbjct: 419 ALGSYAGRRHVSLFAATFEEG----------------------------------AAQAL 444

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
               L+ +     +             S   +  +  ++           +L   E    
Sbjct: 445 SARQLEQVQEFGNFINRLQYRATREPASRLLEDLLAAIRYEAW----LFEHLDPREAESK 500

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            S++   +   G     +    I++   +     +     +   + +     S+ L F  
Sbjct: 501 WSNVRDFVGWLGRKGDEDGKNLIELTQTIALISMLDKNDSEFDGVQLATLHASKGLEFKH 560

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI-YTRS 702
           ++L G+ EG+ P  ++ +                +K   +    +      +  +  T  
Sbjct: 561 VLLVGVEEGLLPHQSSID---------------EDKIEEERRLMYVGITRAQRSLNITWC 605

Query: 703 LRENNIP----TIASRWLQRL 719
            R            SR+++ +
Sbjct: 606 ERRKAGKEARTCEPSRFIEEM 626


>gi|319788397|ref|YP_004147872.1| DNA helicase II [Pseudoxanthomonas suwonensis 11-1]
 gi|317466909|gb|ADV28641.1| DNA helicase II [Pseudoxanthomonas suwonensis 11-1]
          Length = 726

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/598 (9%), Positives = 135/598 (22%), Gaps = 79/598 (13%)

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPAT 242
           ++ A + + ER             +       ++       +     ++I     +    
Sbjct: 170 MRRAYELYQERCDRAGLVDFAELLLRAHELLRDNPALLQHYRTRFRELLIDEFQDTNAIQ 229

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
              +  +A       V    D       W     ++      +                 
Sbjct: 230 YAFVRVLAGDTGR--VFVVGDDDQAIYGWRGAKVENVQQFLRDFP--------------- 272

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                      G  +  +       +      +     N D +  ++         V + 
Sbjct: 273 -----------GAQTIRLEQNYRSTANILGAANAVIAHNPDRIGKQLWTDSGEGEPVDVY 321

Query: 363 EADNEREEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            A NE +EA  +   +R  + +    +++A++      +R ++  L    +   +  G+ 
Sbjct: 322 AAYNEMDEARFVVERIRQWVRDGGSWREAAVLYRSNAQSRALEEVLLSEQVPYRVYGGMR 381

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
                      + L  +    D  A    V  P    G       R +        R   
Sbjct: 382 FFERAEIKDTLAYLRLVANRADDAAFERTVNTPARGIGDRTLDEVRRRARE-----RSQS 436

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                  L +        +            L  E  +LA  L D +   +      +  
Sbjct: 437 LWDAATALVAENALAARARNAVAGFLGLVEALDAETADLA--LKDRVDHVLARSGLRQHW 494

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
            +   G L      +     +                                     + 
Sbjct: 495 TSEARGQLDAESRLENLDELVSVASRFS-----------------------RAELDDDQE 531

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  E +  ++                 + ++    ++ L F  + L G+ E         
Sbjct: 532 SMSELVAFLSYAALEAGEGQAQADEDGVQLMTLHSAKGLEFPLVFLVGVEE--------- 582

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
             F S     +      E+ +        +    + L+ T +               R L
Sbjct: 583 GVFPSSKSTEEQGRLEEERRLAYVG----ITRARQKLVMTYAESRRIHGMDMYGMPSRFL 638

Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                   + ++ R Q           +   P  + P           ++    +   
Sbjct: 639 REIPGHLLNEVRPRVQVARPLAAAPRTSV-HPAIEAPSIALGQAVMHPSFGRGVVTDY 695


>gi|256827426|ref|YP_003151385.1| DNA/RNA helicase, superfamily I [Cryptobacterium curtum DSM 15641]
 gi|256583569|gb|ACU94703.1| DNA/RNA helicase, superfamily I [Cryptobacterium curtum DSM 15641]
          Length = 841

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 78/740 (10%), Positives = 175/740 (23%), Gaps = 125/740 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     + G  +  +  + +   +      A+             
Sbjct: 54  EILAITFTNKAAAEMRERLGALVGPAARGM-WVSTFHSMCVRILRANA------------ 100

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                E+      +     D  K L  +    L I P      A  L + I   + E   
Sbjct: 101 -----EVIGFTKNFTIYADDDSKRLIKDIMAQLDIDPKRFPVNA--LRNRISSAKNELIL 153

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK- 224
            +      ++   +        L+             +    + Y   L +     L   
Sbjct: 154 PDAFDQRASDPIALVAARVYHELQKRLHQANAF----DFDDLLMYTWLLFKHHPNVLEAY 209

Query: 225 -GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                 +++     +  A   + + +A      +V+   D       W     ++     
Sbjct: 210 QERFRYLLVDEYQDTNHAQYAITTLLAARHKNIMVV--GDDDQSIYSWRGADIRNILEFE 267

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                  +PQ    KL          +     V      R                    
Sbjct: 268 -----QDYPQTRTVKLEKNYRSTATILDAANAVIAHNVNRKSK----------------- 305

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARR 401
               ++         + +  A +ER+E   IA  +     +  +  + AL       +R 
Sbjct: 306 ----RLVPTGDTGDKIHVYMASDERDEGRWIAGEIERRHTQGTSYNQIALFYRTNAQSRM 361

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           ++  L R G+   I  G           + + L  +    D MA   ++  P    G   
Sbjct: 362 LEDMLLRAGVPYRIVGGTRFFDRAEIRDVMAYLTLVVNPADDMAAKRVINVPRRGIGKTT 421

Query: 462 KYLSRAKNALELVALRGNKN--------------------------SYDIMDLKSLVLDR 495
             L  A  A                                     +    +L+ +V   
Sbjct: 422 IELIDACAARNNCTFLEAAQLTIADESVRLSTRTALGQFTSLLSEAATWTGELRRIVEMI 481

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI----- 550
           +        + +  +       E     +  + +        + +  +     S+     
Sbjct: 482 LERSGMVRALENSGTDEDLGRVENIKEFLGVVDEFTATHDADEAHYAAPIAAASLNEEAQ 541

Query: 551 ---------------------SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                                +       T            L    F  E    +++ +
Sbjct: 542 DQEQDQQQERQQQEVQANVATASLATAEETSADTNANHSTAFLAAEEFNTEAPAGTNMGT 601

Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                      +     D I  +     +    +  + + ++    ++ L FD + + G+
Sbjct: 602 AADMAAPVRVLSGDSLADFIEWVALRTDLDTMSDDGTAVTLMTVHAAKGLEFDCVFVAGM 661

Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE---- 705
            E ++P   + N       +  L                 +    + L  T +       
Sbjct: 662 EETIFPHMNSINDATGVEEERRLA-------------YVAITRARKQLYITCASNRKLFG 708

Query: 706 NNIPTIASRWLQRLLVLGGT 725
                  SR+L  +      
Sbjct: 709 QTQANPTSRFLAEIPAELRH 728


>gi|166154823|ref|YP_001654941.1| DNA helicase [Chlamydia trachomatis 434/Bu]
 gi|166155698|ref|YP_001653953.1| DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301336102|ref|ZP_07224346.1| DNA helicase [Chlamydia trachomatis L2tet1]
 gi|165930811|emb|CAP04309.1| DNA helicase [Chlamydia trachomatis 434/Bu]
 gi|165931686|emb|CAP07263.1| DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 634

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 75/690 (10%), Positives = 166/690 (24%), Gaps = 123/690 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFI---EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            +     T +A  EL+          G      P++ +   +                  
Sbjct: 52  QILAITFTNKAANELKERIQSQCRELGYSDV--PMVSTFHSL-----------------S 92

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPE--SPLSLPISPANAIWLAKNLADIIDIIE 160
           V  ++R + L      +        + L  +    L+L     NA+         I   +
Sbjct: 93  VYILRRSIHLLDRQSNFVIYDQSDSEKLIKQCLRKLNLDKKLCNAMQFT------ISQAK 146

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-- 218
              +  EDL + +               +     + E+L   NA           +    
Sbjct: 147 NRLQSPEDLDSKEYPDPT----------RTVYAEYQEQLRAANALDFDDLLFLTEKLLRI 196

Query: 219 --AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
              +         ++I     +  A   +   +A   N   V+   D       W     
Sbjct: 197 PEVQQEYANHWKALLIDEYQDTNHAQYLIAKRLAAAHNNIFVV--GDPDQSIYSWRGANI 254

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            +              Q     L+  L+        +   +N +   +    +  L    
Sbjct: 255 SNILNFE---------QDYSQALVVRLEENYRSCGTILEAANALIQNNSARLEKTLRSVK 305

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALIT 393
                                 +      N+R+EA  +   +       D       ++ 
Sbjct: 306 GPG-----------------DKIFCFTGKNDRDEAEQVLEEISNLHSYKDIPLSDICILY 348

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                ++  +  L + G   +I  GI          + + L       D  A    +   
Sbjct: 349 RTNFQSQSFEAALLKRGYPYEIIGGISFYKRREIQDILAFLRLFSNNYDMAAFERTIS-- 406

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                             + +  L  +      T +P  Q+   
Sbjct: 407 -----------------------------LKKCGIGATTLAALMNYAKITDLPILQACWD 437

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
             +K+   L         + L T+        GN  + ++   T+     + + +     
Sbjct: 438 VLEKKSIRLTKKQQQGLFSYL-THFHQMEQLYGNCDLHEFINETIRITDYLSILKEDPET 496

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
               +   + L +              ++      +  L    +          L ++  
Sbjct: 497 YEDRKNNLEQLLAETQIW-------GKSSENLPGFLEDLALKSSADETASSHDRLKLMTI 549

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             S+ L F  + L GL E + P   +K    +   +  L      +            + 
Sbjct: 550 HNSKGLEFPVVFLVGLEENLLPHANSKGMHENIEEERRLCYVGITRAQEYLY-----LSR 604

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
            +      + R      + SR++  L    
Sbjct: 605 AKTRFLWGTERT----MVPSRFISELPRAL 630


>gi|215402750|ref|ZP_03414931.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           02_1987]
 gi|289744679|ref|ZP_06504057.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987]
 gi|289685207|gb|EFD52695.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987]
          Length = 770

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 85/732 (11%), Positives = 188/732 (25%), Gaps = 98/732 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R   + + G+K+  +  + +              L   LN   S
Sbjct: 68  GQILAITFTNKAAAEMRERVVGLVGEKARYM-WVSTFHSTCVRILRNQAALIEGLNSNFS 126

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+ +    L   IK   P                   LA+ I  ++ E  
Sbjct: 127 IYDADDS-RRLLQMVGRDLGLDIKRYSPRL-----------------LANAISNLKNELI 168

Query: 165 KW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----- 218
              + L  L  +         A  +      +  RL   NA          +        
Sbjct: 169 DPHQALAGLTEDSDD-----LARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQ 223

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH------PNGAIVLPGLDCHIPTAIWN 272
                +     +++     +  A   L+  +         P G + +   D       + 
Sbjct: 224 IAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCV-VGDADQSIYAFR 282

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             T ++            +P      L       +  +    +V     GR         
Sbjct: 283 GATIRNIEDFE-----RDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRR-------- 329

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKS 389
                        E ++         +    ADNE +EA  +A    AL    +      
Sbjct: 330 -------------EKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDV 376

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A+     N +R ++  L R GI   +  G+          + + L  +    D +++  +
Sbjct: 377 AVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRI 436

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
           +  P    G   +                   +        +   +      NT      
Sbjct: 437 LNTPRRGIGDRAEACVAVYAEN----------TGVGFGDALVAAAQGKVPMLNTRAEKAI 486

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
           +   E   EL   L D + + +  ++     +     +    +  +L    L  +    H
Sbjct: 487 AGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARL--DNLNELVSVAH 544

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
               +                +      +    +    +    +  +  +     +  + 
Sbjct: 545 EFSTDRENAAA----------LGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVT 594

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
           ++    ++ L F  + + G  +G++P   A +       +   ++  + +   +      
Sbjct: 595 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERGWSMSASPR---RQRLYVS 651

Query: 690 MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
            A         RS     +    SR+L+ +            K      +    +     
Sbjct: 652 RA-------IVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSAR 704

Query: 750 KQPHYKRPKPFP 761
             P        P
Sbjct: 705 PSPTRSGASRRP 716


>gi|256824633|ref|YP_003148593.1| ATP-dependent DNA helicase PcrA [Kytococcus sedentarius DSM 20547]
 gi|256688026|gb|ACV05828.1| ATP-dependent DNA helicase PcrA [Kytococcus sedentarius DSM 20547]
          Length = 831

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 76/746 (10%), Positives = 188/746 (25%), Gaps = 88/746 (11%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +    R+  ++P     +     T +A  E+R     + G  +  +  + +    
Sbjct: 104 VLTHRIAHLLRHRGVHP---GQILAITFTNKAAAEMRERVEALVGPPARAM-WVSTFHSA 159

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                             V  ++R  +   L   +        + L       L + P  
Sbjct: 160 C-----------------VRILRREAKTVGLRSTFSIYDAADSQRLISLVLRELDLDPKR 202

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
               A +    I   + E    E      NE            +      +++RL E NA
Sbjct: 203 FPPGAVSHR--ISGAKNELLDAEAFANAVNENNPYD-----RAIAEVYTRYSQRLREANA 255

Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  +  +             +     I++     +  A   L+        GA   
Sbjct: 256 LDFDDLIMMTVNILQAFPAVAEHYRRRFRHILVDEYQDTNHAQYVLVR---ELTGGAGST 312

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
            G++             +           +    Y+         ++ E           
Sbjct: 313 GGVEPGQQP-----AEHQVPPAELCVVGDADQSIYAFRGATIRNIVEFETDYPEARTI-L 366

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
           +              +T   RN       + +       +    ADNE +EA  +A  + 
Sbjct: 367 LEQNYRSTQTILTAANTLIGRNERRRAKNLWSEAGDGDRIVGYVADNEHDEASFVAERID 426

Query: 380 MSL---DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             +   +      A+       +R ++    R G+   +  G             + L  
Sbjct: 427 QLVDRGEAVPGDVAVFYRTNAQSRALEEVFVRVGLPYRVVGGTRFYERREIKDALAYLRV 486

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL-RGNKNSYDIMDLKSLVLDR 495
           +    D + +  ++  P    G   +    A    E +        + D   L +  L  
Sbjct: 487 LVNPTDTVNLRRILNVPKRGIGDRAEGALVALAERERIPFVAALGRAEDAPGLATRSLKA 546

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
           + +  +        +       ++   +++         +    +        ++++   
Sbjct: 547 VQSFASLLEALRTVAEAGGGVADVLEAVLEQTGYAQQ--LRDSDDPQDESRLENLAELVS 604

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
           +     +     +      +                        A+   +++ ++ + D 
Sbjct: 605 VAREFDEAAADPDSPTAGEV---------------------GGAAHLAAFLEQVSLVADT 643

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
           +    +  +   + ++    ++ L F  + L GL +G +P   +              L 
Sbjct: 644 DAGADEDSEQGVVTLMTLHSAKGLEFPVVFLTGLEDGTFPHMRS--------------LN 689

Query: 676 TAEKYIGQAAHDFEMANGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
             ++   +    +      R  ++      RS   +      SR+L  L         + 
Sbjct: 690 DPDELEEERRLAYVGITRARERLHLSRASVRSAYGSPQYNPPSRFLGELPEHLLHWEREG 749

Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKR 756
                                P   R
Sbjct: 750 AVGAHAPTSQPAVARLAGRIAPERTR 775


>gi|326565010|gb|EGE15210.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 103P14B1]
 gi|326574116|gb|EGE24064.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 101P30B1]
          Length = 689

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 75/689 (10%), Positives = 177/689 (25%), Gaps = 108/689 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPV 103
            +T    T +A +E++S   +I   + +    + +      +    +L  +        +
Sbjct: 65  RITAVTFTNKAAREMKSRVQKILSHEKSRGLTVSTFHQFGLQFLRYELKHTSLKPNFSIL 124

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                   LA L+   R+ L    +       +       N +   K+ A+ +D      
Sbjct: 125 DADDCQRLLAELM--VRDNLSGAERRELVHEAIKKISDWKNDLIAPKDAAETLD------ 176

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              EDL                       + +   L   NA          +R   E   
Sbjct: 177 -DPEDLG-----------------FVHLYELYERNLRAYNAVDFDDLITMPVRILRESHE 218

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +  A   L+  +        V+   D       W     ++
Sbjct: 219 VKDKWQNRIRYLLVDEYQDTNTAQYELIKLLVGRLGRFTVV--GDDDQSIYTWRGAKPEN 276

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
             +   +              +  L+        +   +N +   +  + +  L  D  D
Sbjct: 277 MALLKQDFPNLE---------VVKLEQNYRSTNHILGAANAVIANNEHMFEKSLWSDKGD 327

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITAD 395
                               + +I  +N+ +EA  +A  +      N +     A++   
Sbjct: 328 G-----------------EKIRVITCNNDFDEAERVAKEILTHRLRNNQTWDKYAVLYRS 370

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              AR ++ +L +  I   +S G           L   L  I   +D  A   ++  P  
Sbjct: 371 NFQARALEAQLRQLEIPYKLSGGTSFFARTEIKDLMGYLRIIINPDDDAAFLRVINTPKR 430

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G                                     +        V       +  
Sbjct: 431 GIGSVTLEKLGL--------------------FAQHCGTSLLGACTRAGVKDALGAKAGA 470

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             E     +++    +                          +  ++    +  ++   L
Sbjct: 471 IIESFGEFINYYTHQLHDNSDPMPLVRQMITE-------TGYIDYVKESSKNPQQEKGRL 523

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              E      +      +       +A+    ++  +++ +    + E ++ + ++    
Sbjct: 524 DNIEALYLSIAALINRADDEHDKTIDAVIRKMVLLDMLEQQ---QEEENTNKVNLMTLHA 580

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L FD + + G  E +       N  +S  +         E+           A    
Sbjct: 581 AKGLEFDYVYIIGCEEKL---LPHVNSIMSANI---------EEERRLMYVGITRAKSEL 628

Query: 696 HLIYTRSLRENN--IPTIASRWLQRLLVL 722
            L+  +  R          SR+L  L   
Sbjct: 629 TLLLCKQRRSGADFKAVTPSRFLDELPAE 657


>gi|126437275|ref|YP_001072966.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS]
 gi|126237075|gb|ABO00476.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS]
          Length = 784

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 86/744 (11%), Positives = 201/744 (27%), Gaps = 109/744 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T +A  E+R   + + G ++  +  + +              L   LN   S
Sbjct: 68  GQVLAITFTNKAAAEMRERVVGLIGPRARSM-WVATFHSTCVRILRNQASLLPGLNSNFS 126

Query: 105 ----NIQRLLELA------RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
               +  R L L            +  +L            +    + A A   A +LA 
Sbjct: 127 IYDADDSRRLLLMIGKDMGLDTKKYSPRLLSNGISNLKNELIGPEQAAAEASEAADDLAR 186

Query: 155 II-DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
           II D+    +++    +AL  +      +         ++Y+  R               
Sbjct: 187 IIADVYAEYQRRLRAANALDFDDLIGETVAVLQRFPQIAQYYRRR--------------- 231

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG---------AIVLPGLDC 264
                           I++     +  A   L+  +A H            A +    D 
Sbjct: 232 -------------FRHILVDEYQDTNHAQYVLVRELAGHGAHDTDDDGVAPAELCVVGDA 278

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +   T ++      +   +T            L+      + + N +N +  R+
Sbjct: 279 DQSIYAFRGATIRNIEDFERDYPNATTIL---------LEQNYRSTQTILNAANSVIARN 329

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
               +  L  D+                      +    ADNE +EA  +A  +    D+
Sbjct: 330 AGRREKRLWTDSGHGEL-----------------IVGYVADNEHDEARFVAQEIDRLADD 372

Query: 385 NKK--KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                  A+     N +R ++    R GI   +  G+          + + L  +    D
Sbjct: 373 GHSYNDFAVFYRTNNSSRALEEVFIRAGIPYKVVGGVRFYERREIRDIVAYLRVLDNPGD 432

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            +++  ++  P    G   +            +                   + A +   
Sbjct: 433 SVSMRRILNTPRRGIGDRAEACVAVYAENTGASFND--------------ALQAAAEGKV 478

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
             +     +      ++   L   +   +  LV    ++      L  S+  +     L 
Sbjct: 479 PMLNTRSEKCIASFVQMLDDLRGRLGDELGELVEAVLDRTGYRAELEASNDPQDLAR-LD 537

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
           N+                   L+    + ++          ++++ ++ + D + +    
Sbjct: 538 NLNELVSVAHEFSIDRANAAALAEDLDEPVDEDIPDTGVLAQFLERVSLVADADDIPEHG 597

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                + ++    ++ L F  + + G  +G++P   A              L    +   
Sbjct: 598 S--GVVTMMTLHTAKGLEFPVVFVTGWEDGMFPHMRA--------------LGDPNELSE 641

Query: 683 QAAHDFEMANGTR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
           +    +      R  L  +R+   ++          R L     +  D  +         
Sbjct: 642 ERRLAYVGITRARQRLYLSRAKVRSSWGQPMLNPESRFLREIPQELIDWRRTDPTPSFSA 701

Query: 742 TRKLDYTTKQPHYKRPKPFPPLEA 765
             ++   +    +  P+P P    
Sbjct: 702 PGRMSSGSSGTGFGAPRPSPMRSG 725


>gi|182439644|ref|YP_001827363.1| hypothetical protein SGR_5851 [Streptomyces griseus subsp. griseus
            NBRC 13350]
 gi|178468160|dbj|BAG22680.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
            NBRC 13350]
          Length = 303

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 74/257 (28%), Gaps = 32/257 (12%)

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
              +  P     R I KL          +   RGTL H ++  L        T      + 
Sbjct: 21   DFMQCPLLYRFRVIDKLPEK-----PSEAATRGTLVHAVLERLFDAPAADRTAPRARALI 75

Query: 837  QIIDSHFEKENLP----------PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                    +                    W     ++   +   E+  +  +E     + 
Sbjct: 76   PGQWDRLLESKPELSDLFAGDTEGERLTRWLGEAERLVDRWFSLEDPTR--LEPAERELF 133

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             +  +ES G+ L G  DR+D+  SG V I DYKTG  P+          Q++  A  +  
Sbjct: 134  VETELES-GLRLRGVIDRVDVAPSGEVRIVDYKTGKAPRP-EYSDGPLFQMTFYALVIWR 191

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                 +       L  + L     +                E+  + L+ +   +    +
Sbjct: 192  -----LKGVVPRRLQLVYLGSGDVLTYDPVVAD-------LERVERKLLALWDAISLATE 239

Query: 1007 PFISHLRLSEKSNIQSE 1023
                  R ++      +
Sbjct: 240  TGDWRPRPTK-LCGWCD 255


>gi|300712678|ref|YP_003738491.1| putative helicase [Halalkalicoccus jeotgali B3]
 gi|299126362|gb|ADJ16700.1| putative helicase [Halalkalicoccus jeotgali B3]
          Length = 1253

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 96/867 (11%), Positives = 230/867 (26%), Gaps = 127/867 (14%)

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMK 224
                 E+   +    A   +   + +T R    +A          +        A H ++
Sbjct: 373  DGAAIERSIPYVYAIARLYQTVREEYTRRKEAQHALDYSDLIERTIDFLETHDRARHELR 432

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVANHP----NGAIVLPGLDCHIPTAIWNTIT----- 275
                 +++     + P    L++ +        +G  V    D       +         
Sbjct: 433  EQFEYLMVDEIQDTDPRQWELVTLLTGSDGPNFDGQNVFLVGDEKQSIYRFRRADVTMFR 492

Query: 276  ---EKSTNITSSNTTYSTHPQYSLAKLLDFL----DIKREDVKRLGNVSNEMYGRSMVIS 328
               ++       +T  +     +   L   L    ++  E  +  G+       R   ++
Sbjct: 493  EARDRLKRANPDSTETAQQLSGNFRTLSGPLTFINELFEEVFQPEGDEYQPYEARPQWLT 552

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE------REEAISIAIALRMSL 382
                     D     ++  +  +       +     D          EA  +A  L    
Sbjct: 553  PERSEGTEIDGTVEYLVVPE-TDQDVAPLGLENSWFDERTYRSKGEREAYGVAARLTQLF 611

Query: 383  DE---------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
            D+                 +  AL+   R      +     + I            T   
Sbjct: 612  DDPPQIYDPETDEYRAAQPRDVALLFRTRTRFPEFERAFEEYDIPYSSFGARGFYETSEI 671

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
              L +LL  +      + +  +++ PL  F   +  +                   D   
Sbjct: 672  QPLVNLLKVLQDPTQNIPLYGVLRSPLFGFTDEQLAVL---------------YDSDECL 716

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP---LVTYKTNKNST 544
             + L     A +  +  +  W+ +   +  +        + + I     L++   ++   
Sbjct: 717  WRQLATMDNALETAHGQLKQWREQAGLDGSDRITTWASLLSEIIDDTGYLISVGADERPE 776

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK----------TLSSLFSKIIET 594
               ++++ + +   T  +   L     +  +  E + +           +  +  + + +
Sbjct: 777  QAVVNVNKFREQLRTWEEGSALPLSEVVERIERERDQEDDPGEATIPAAIDGVQLRTVHS 836

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
               ++   +   ++   + +  T+    + SS    L  LE+        I G      +
Sbjct: 837  AKGLEFPIVVVPELSRGVNERATI---TDNSSYSQSLAYLETVGDEPVLGIKGPSPANSF 893

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA-- 712
                  +  +++ +Q        E         +      R  +   S       + A  
Sbjct: 894  ETTATPDYEIAKTVQQQ------ELRAESRRLLYVATTRVRDHLLLTSTHTVGSDSEATF 947

Query: 713  -----------SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-HYKRPK-- 758
                        R L + ++L   +   +L   G              + P     P   
Sbjct: 948  GEYDTGEQASSWRDLVQPVLLEDRELLSDLATAGSATHLLGDGQYTVRRPPTPVAGPAES 1007

Query: 759  -----------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF------KK 801
                       P PP  +     S + ++ L++D  +    R         F      KK
Sbjct: 1008 ASTERACDIELPEPPESSAGIALSATAVRDLVSDHSSHDESRTETEPEHSAFLTESSSKK 1067

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
                T  GT  H +    +       +     ++          + L P +    ++   
Sbjct: 1068 GLAPTQFGTAVHRLCELSLVGSTIDWSAAPTQIVDT-------PDKLSPTVLKDLQNQVQ 1120

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
                   + E  +       +     ++ + +  +   G  D + +       I+DYKT 
Sbjct: 1121 YGVSDIEQVEATLPVEAT--YDEYQVRLELPTGQVV--GDIDHLTVTDD-CYYISDYKTD 1175

Query: 922  DNPKK--ETAQKLIDPQLSLEAAALKA 946
                +  ET  +    QL + A AL  
Sbjct: 1176 TLGDRDLETVAEHYFAQLYVYACALSQ 1202


>gi|198284626|ref|YP_002220947.1| exodeoxyribonuclease V subunit gamma [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667219|ref|YP_002427299.1| exodeoxyribonuclease V, gamma subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198249147|gb|ACH84740.1| exodeoxyribonuclease V, gamma subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519432|gb|ACK80018.1| exodeoxyribonuclease V, gamma subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 1130

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 94/885 (10%), Positives = 208/885 (23%), Gaps = 78/885 (8%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
            L+  ++E  R  PL P  L      V +    + L+       G  + +   +   G  
Sbjct: 20  WLSDAVLEWLRAHPLRP--LEEEIFLVQSNGIAEWLQWTLAAHEGICAAV--RVALPGRF 75

Query: 85  VEEKFTADLLLSYNLNP-PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
           + E +   L         P+        L RL+              +         +  
Sbjct: 76  LWESYARVLGTGIVSARSPLDKAPLTWRLMRLLPELLAHADFAPLRHFIGQSQRPDGALE 135

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW------WLLAADFLKIASKYWTE 197
               +A  +AD+ D  +     W                          +     +   +
Sbjct: 136 RRWQMAAQIADLFDQYQVYRGDWLADWTTDQSLLRRGDGERVTLPADQRWQPRLWQALRQ 195

Query: 198 RLVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            L         G      Q           +      ++I G+      +   ++ +   
Sbjct: 196 DLHSRGLDQAPGRAQVHEQFLAALNAGRPPVTPLPRRVVIFGAATLPEQSLTALAALGRQ 255

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKST---------NITSSNTTYSTHPQYSLAKLLDFL 303
               + +P    +    I +                    S T      Q+    LL   
Sbjct: 256 MQVILAVPNPCRYHWADIVSGRELLRRERRRQPPRNGHDLSATATEDLHQFGNP-LLAAW 314

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP------------- 350
             +  D   L +  +E       +    +   + D  +T + + ++              
Sbjct: 315 GRQGRDFLDLLDQFDETAALQRQMDIPRIDLFSEDQGDTLLRQLQVQIRDLEGIRPETCT 374

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLE-- 405
            +      V    A +   E   +   L           +   ++  +      +     
Sbjct: 375 ALDDNDHSVVFHIAHSALREVQILHDQLLDRFATGKLQPRDVIVMVPEIGGFAPLIRATF 434

Query: 406 -----LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                  R  I   I              L  LL    +      I  L+  P  +  F 
Sbjct: 435 DQYDREDRRYIPYHIVDLQARDEQPLLLALDWLLRLPEQRCRQSEIRDLLNCPALRRRFG 494

Query: 461 --------EKYLSRAKNALELVALRGNKN-SYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
                    ++          ++              ++     +               
Sbjct: 495 LELEDLPIVQHWLAGAGWRWGLSAEHRAALGMPHCGSQNSGDFALQRLCLGYASGDDSHF 554

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
              E       L   +L  +  L+    +     G   + +        L          
Sbjct: 555 SGIEAYGEVGGLDAALLGPLGQLLEKLAHWQHVLGESLVPEHWGEAARNLLTDFFSASDD 614

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                 +   + L    +               +      ++D   +         +   
Sbjct: 615 DDEALLQNLEEALRQWQTDCAAADFNEALPLAVFRGAWLEMLDAPDLGRSFL-GGGVTFC 673

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKN-TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
             L  R + +  + L G+NEG +P+     +  L  +         + +   +      +
Sbjct: 674 TLLPMRAVPYPLVCLLGMNEGDYPRRSPRPDFDLMALPGMARPGDRSRRDDDRYLMLEAL 733

Query: 691 ANGTRHLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRG---------QCYL 739
               R L  + + R+         S  + +L       +   L+KR            YL
Sbjct: 734 LAARRELYVSWAGRDQRNNHERAPSLLVAQLREAIRDGWPPALEKRTFEHPLQPFSPDYL 793

Query: 740 DWTRKLDY-TTKQPHYKRPKP---FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                L     +        P     P  A+    S  E+ +    P   + R+ L+ DF
Sbjct: 794 AGKPGLRTWAREWYPSPHSAPENAALPDPAEITPRSIRELLEFFRLPARAFYRQRLRTDF 853

Query: 796 IPHFKKDPDRTDR---GTLFHNIITELIKKRINKNTPEINHLMKQ 837
                 + D           ++++ +L++         I   ++ 
Sbjct: 854 NEEDPAEEDDEPFTLDSLETYHLLEDLLRAAEKNGPDRIAERVRA 898


>gi|196036255|ref|ZP_03103654.1| ATP-dependent nuclease, subunit A [Bacillus cereus W]
 gi|195991230|gb|EDX55199.1| ATP-dependent nuclease, subunit A [Bacillus cereus W]
          Length = 1241

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 96/899 (10%), Positives = 213/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 338  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 397

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 398  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 457

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 458  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 518  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 577

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 578  KTDSMRPVKYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 637

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + + +    
Sbjct: 638  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSTFLKGAP 687

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 688  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 747

Query: 548  LSISDWTKL--------TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              + D  +             L+ +     R          G+    +    I     ++
Sbjct: 748  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 807

Query: 600  ANAIEWIDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL- 638
               +    +                              + K    S L I   ++  L 
Sbjct: 808  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 867

Query: 639  ---LNFDTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
               +    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 868  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 927

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 928  APSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 987

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      Q   K       +       + S   +                ++ +    R 
Sbjct: 988  EKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 1047

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 1048 PIQTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL- 1101

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1102 -TFEQAEEIAVEKVISFFDSDLGKRILAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1160

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1161 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKS 1218


>gi|323351871|ref|ZP_08087522.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis VMC66]
 gi|322121928|gb|EFX93660.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis VMC66]
          Length = 762

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 67/627 (10%), Positives = 170/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  ++     +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRERLDDFTVTELVEAVLEKTGYSAALAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  +  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPAD-ESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRAS 587


>gi|109898076|ref|YP_661331.1| exodeoxyribonuclease V, gamma subunit [Pseudoalteromonas atlantica
           T6c]
 gi|109700357|gb|ABG40277.1| DNA helicase/exodeoxyribonuclease V, gamma subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 1166

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 79/726 (10%), Positives = 187/726 (25%), Gaps = 66/726 (9%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            + V +    Q L+ E  +  G  + I   LP        + + +   +          +
Sbjct: 36  VVLVQSPGMAQWLKIEIAQALGISANIDFPLP-----SSYIWQLYKGHVNDLPE-QSAFT 89

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                 +L  ++    ++      +    +       P     L + +ADI D       
Sbjct: 90  KDNMTWKLMSILPEMSDRT-----EFASIAQYLDDQQPLKLYQLCQKIADIYDQYLVYRP 144

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN--ASSPVGYQIALMRAEAE-H 221
           +W               + A  +  I  +   E   EL+            LM    +  
Sbjct: 145 EWILAWEQGENNVADTDVSAQPWQPILWRALVEYAKELDESPYHRANLHTRLMAELEDTK 204

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             K    P+ + G +        + S +A   +  I       H    I +        +
Sbjct: 205 SSKDELKPLFVFGLSAMPVQQLEIFSALAKSRDVIIFWFNPSAHYWGDIVDNKQVLQAKL 264

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG---------------NVSNEMYGRSMV 326
            S     S   Q  L+ + D+L +    +   G                + +    +   
Sbjct: 265 QSLLAQASEDAQSGLSGMDDYLLVGNPLLASWGKQGRDYQDMILGLEVELHDAFIEQEPE 324

Query: 327 ISKSFLPPDTSDMRNTDILENKIP-------------NIQKCFSDVALIEADNEREEAIS 373
                +  +   + +   +E                  + +    + +    +   E   
Sbjct: 325 SLLEHMQHEVLALTHRGAIEPLPAQELLTNGEEYPKIPLAEDDMTLQVHACHSAVRELEV 384

Query: 374 IAIALRMSLDENKK----KSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTT 424
           +   L     ++ +       ++  D      +   +         I   IS       +
Sbjct: 385 LHDQLLHLFADHPELHPGDVIVMMPDVASYAPIIDGVFGGTDKALHIPYAISDRNAQQES 444

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP------EKYLSRAKNALELVALRG 478
              +    L++          +  L + P  +  F       +       +A       G
Sbjct: 445 PLLNSFIQLMSLHQSRIGLSDVLALCEVPAVQRKFDITPEEFDLLSVWLADAGVRWGWDG 504

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
              +   +  +         Q+           + ++  E          Q +  L  + 
Sbjct: 505 QDKTRWALPNEPQNTWLFGLQRLLAGYAMGGESMFDDAHEPIAPYEHIEGQHVVALGKFY 564

Query: 539 TNKNSTCGNLSISD-WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII--ETG 595
                    L+       L       + L E   LP+   +     L     ++   E  
Sbjct: 565 LFSRELGNALAFCQSAASLHAKIKGALSLIEQLYLPDDDDQTYVLQLRQSLEQMTVHEHQ 624

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              +     ++  + + +  + V  +      +     +  R + F  + L GLN+G +P
Sbjct: 625 FSGEIVHDVFLAELEQSLSSKGVGQRFLAG-YVNFCTLMPMRSVPFKVVCLLGLNDGDYP 683

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL--RENNIPTIAS 713
           +      F    +        + +   +      + +  + L  +      ++N P   S
Sbjct: 684 RQVVPVGFDLMRIGKGRRGDRSRRLDDRYLFLEAILSARKRLYLSFQGFSAKDNSPRSPS 743

Query: 714 RWLQRL 719
             L  L
Sbjct: 744 ILLSEL 749


>gi|325291019|ref|YP_004267200.1| ATP-dependent helicase/nuclease subunit A [Syntrophobotulus
            glycolicus DSM 8271]
 gi|324966420|gb|ADY57199.1| ATP-dependent helicase/nuclease subunit A [Syntrophobotulus
            glycolicus DSM 8271]
          Length = 1273

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 90/759 (11%), Positives = 198/759 (26%), Gaps = 180/759 (23%)

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
            G  +      S    ++    +       D   N+    +   ++      +N + EA  
Sbjct: 545  GGQAEAGLSDSPDQDEAEAGANGRSNPIDDSAGNEEGRQRDSENEEKEEVLENIQCEARL 604

Query: 374  IAIALRMSLDENK--------------------KKSALITADRNLA-RRVKLELTRFGIN 412
            IA  ++   + ++                    +   ++             ELT  GI 
Sbjct: 605  IARLIKQLREPDEKGKVFQVWDKIAERYRCVEFRDIVILLRTTRNWSEVFMEELTAQGIP 664

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
                 G     T+   ++ SLL  I      + +  +++ P+A F   +    R  +   
Sbjct: 665  AFADTGAGFFKTIEIQVMMSLLQIIDNPLQDIPLLAVLRSPVADFTTEDLAELRLADRK- 723

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
                           L   +     ++          S+                     
Sbjct: 724  -------------ASLYKALQILAGSETPAAMKAAAFSQK-------------------- 750

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
             L+ ++           +    + T        +    +      +   + L     +  
Sbjct: 751  -LLQWRRVSQHLSTERLLWRLYQETGYYAAIGAMPLGEQR-----QANLRILFERARQFE 804

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL-FILGTLESRLLNFDTLILGGLNE 651
            ET      + + +ID +    +       + ++  +  I+   +S+ L F  +IL G  +
Sbjct: 805  ETSYKGLFHFVNFIDKLKDSRNDLGSAKILGENDNVVRIMSIHKSKGLEFPVVILAGCGK 864

Query: 652  GVWPKNTAKNPFLSRVM--------------------QSDLNLKTAEKYIGQAAHDFEMA 691
                ++  KN  L   +                    Q+      AE    +    +   
Sbjct: 865  KFNLQDMNKNILLHHDLGFGPEVVTPSLRLSYPSLLKQALREKLRAETLSEEMRILYVAL 924

Query: 692  NGTRH-LIYTRSLRENNIPTIAS---------------------------RWLQRLLVLG 723
               R  L+ T ++++ +                                   L R     
Sbjct: 925  TRAREKLVITATVKDLDKDVRKWAESAGSAGEKLPAYEVLHSNRYLDWIGPALMRHQACT 984

Query: 724  GTDFFDNLKKRGQC-----------------------------YLDWTRKLDYTTKQPHY 754
                  + +  G                               +LD+    +        
Sbjct: 985  LRPHIFSGRLIGDPSIWRINTGDIREMKIPPAGREESEQELEKWLDYLTGENQPEGVEPE 1044

Query: 755  KRPK-----PFPPLEAQPRTYSFSEI-KQLINDPYAVYARRILKLDFIP-----HFKKDP 803
               +     PF  L       + +E+ ++   +        +     +        KK  
Sbjct: 1045 IERRLSWVYPFAALAGTSAKLTVTELKRRFEQNSPEEGLAYLYPDMPVKRPMFMEEKKGL 1104

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
               + GT+ H I+  L     +    +I   ++++I+     +     ID+         
Sbjct: 1105 SAAEAGTVLHFIMQHL-----DYGKEDIEIQIEKMINKDLLTKQQAQGIDVN-------K 1152

Query: 864  SHSFLEHEEKIQ-SSIEKIFVNIPAKMAIE--------------SIGIHLTGFADRIDLL 908
              +FL+ +   +  +   I   +P  M I                  I L G  D     
Sbjct: 1153 IRTFLQSDLGRRMCASRSINREVPFNMEIPCGEVYEHMDSEVYQGENILLQGVIDCFFEE 1212

Query: 909  KSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALK 945
              G + + DYKT   P+      ++    QL+  A AL+
Sbjct: 1213 PDG-LVLLDYKTDYVPEGGSGQLRERYRVQLAYYARALE 1250


>gi|33151437|ref|NP_872790.1| exodeoxyribonuclease V, gamma subunit [Haemophilus ducreyi 35000HP]
 gi|33147657|gb|AAP95179.1| exodeoxyribonuclease V, gamma subunit [Haemophilus ducreyi 35000HP]
          Length = 1113

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 76/735 (10%), Positives = 176/735 (23%), Gaps = 72/735 (9%)

Query: 39  LNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98
            NP    +  + V +    Q L+ +     G            G+      T+ L   Y 
Sbjct: 25  PNPNPFEAEIVLVQSVGMAQWLQMQIANQIGIA----------GNYEFPFPTSFLWQQYR 74

Query: 99  LNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
           +  P    + + E       L RLI  + +      + L                 LAK 
Sbjct: 75  VLFPELPTENIFERETVTWRLIRLIPDYLS--LPEFQSLQHYLTKDSRQYQLKLYQLAKK 132

Query: 152 LADIIDIIETEEKKW------EDLHALKNEKYGMWWLLAADFLKIASKY--WTERL---- 199
           +AD+ D        W      + L  +  ++      L     +   +   W   L    
Sbjct: 133 VADLFDQYLVYRPHWLVHWENDRL-EIVRDEILNHANLKVKNSEDIWQNLSWQAILWRAL 191

Query: 200 -------------VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
                        V  + +         +    E         + I G +        ++
Sbjct: 192 INDIKLDCDESVFVTSHRAYLQEQYFNKLDNLTEIEKSKLPKRVFIFGISSLPATQLAVL 251

Query: 247 STVANHPNGAIVLPGLDCHIPTA--IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
             ++ H    +                  + + +     +             +LL    
Sbjct: 252 KKLSEHCQIHLFFLNPSAEYWGDNVEDRVLEKLALKQKMTAKELEALFVQKNNQLLSMWG 311

Query: 305 -IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
              R+ + ++     +         +                  +   +      V    
Sbjct: 312 KQGRDFLAQILEQEPDQILDVFDACEGDSNLIKLKNAILSFDNPQQLLLASQDDSVQFHS 371

Query: 364 ADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-------TRFGIN 412
             +   E   +   L     ++     K   +++AD N        +        +  I 
Sbjct: 372 CHSIMREVEVLHNRLLQMFAQDPTLAAKDIIVMSADINQYAPYIEAVFSRYMKEDKRYIP 431

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAK 468
              +    ++         SLLN    L D  ++  L+         +F   + ++ R  
Sbjct: 432 FAFADQKAITVDPILMSFMSLLNLKESLFDAESLLDLLDVNAIRERFQFQLQDIHIVRHW 491

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL-VDHI 527
                +      +  +  +  +            +                +  L  + +
Sbjct: 492 VNQAGIRFGLTIDQSEWQNYNAWQNGLTRLLMGISLREENGIWQDSVAFNESYGLSAELV 551

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                 +               I  W K     + +   +    +  +        L+ +
Sbjct: 552 GYLANFIEKLSAWHQIIQQKQPIEVWQKQLSLLINDFYQENEESVHAINLLNI--ALAEI 609

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
             KI +     + +      +    ++ +           +     L  R + F  + L 
Sbjct: 610 IQKITDAKFEQQIDIEIISLLFNEKLNSQQ-NNLNFLVGKVNFCTLLPMRAIPFKVVCLL 668

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE- 705
           G+NE  +P+    N F      S    +             E     +     +   +  
Sbjct: 669 GMNESDFPRAQTVNSFDLMQYASKKGDRARRDDDRY--LFLEALLSAQQFFYISYIGQSN 726

Query: 706 -NNIPTIASRWLQRL 719
            NN   + S  + +L
Sbjct: 727 INNKQHLPSVMVSQL 741


>gi|320011732|gb|ADW06582.1| hypothetical protein Sfla_5183 [Streptomyces flavogriseus ATCC 33331]
          Length = 279

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 83/253 (32%), Gaps = 32/253 (12%)

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-PEINHLMKQII 839
             P     R I +L          +   RGTL H ++  L        T P    L+    
Sbjct: 3    CPLLYRFRVIDRLPEK-----PSEAATRGTLVHAVLERLFDAPAADRTVPGAKALIPGQW 57

Query: 840  DSHFE---------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
            D   E           +        W     ++   +   E+  +  +E     +  +  
Sbjct: 58   DRLLESKPELTELFDGDPEGERLAGWLGEAERLVERWFSLEDPTR--LEPAERELFVETE 115

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            ++S G+ L G  DR+D+  +G V I DYKTG  P+     +    Q+   A  +      
Sbjct: 116  LDS-GLRLRGVIDRVDVAPTGEVRIVDYKTGKAPRP-EYAEGALFQMKFYALVVWR--LK 171

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
             +  R++  L Y+        D +  D          E+  + L+ +   ++   +    
Sbjct: 172  NVVPRRL-QLVYLGSGDVLTYDPVPAD---------LERVERKLLALWEAIRLATETGEW 221

Query: 1011 HLRLSEKSNIQSE 1023
              R ++      +
Sbjct: 222  RPRPTK-LCGWCD 233


>gi|166710261|ref|ZP_02241468.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 728

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 64/710 (9%), Positives = 163/710 (22%), Gaps = 120/710 (16%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E+R         G +      I +   +           +        + +
Sbjct: 60  VTFTNKAAGEMRHRTDLQLRNGSRGMW---IGTFHGLAHRLLRLHWQDARLPEGFQVMDS 116

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R++                                       I+  + E ++
Sbjct: 117 DDQLRLVKRVVQAMELDETKYPPKQLSWW---------------------INEQKDEGRR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +      +    W             + ER             +       +     
Sbjct: 156 PQHIQ----PEPNDDWTEVRRQ---VYAAYQERCDRSGLLDFAELLLRAHELLRDTPALL 208

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A       V    D       W     ++  
Sbjct: 209 AHYRARFREILVDEFQDTNAIQYAFVRVLAGESGN--VFVVGDDDQAIYGWRGAKVENVQ 266

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G  +  +       +      +     
Sbjct: 267 RFLKDFP--------------------------GAQTVRLEQNYRSSANILGAANAVIAH 300

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N + +  ++         + L  A NE +EA  +    R  + +     + A++      
Sbjct: 301 NPERIGKQLWTDSGDGGPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAQ 360

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L    +   +  G+            + L  +   +D  A    V  P     
Sbjct: 361 SRALEEALISAQLPYRVYGGMRFFERAEIKDALAYLRLLTNRSDDAAFERAVNTP----- 415

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        +    LD +        +  W++ +    + 
Sbjct: 416 --------------------------TRGIGDRTLDEVRRLARANALSLWEAAMLCTQQN 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                  + L     LV     +          D   +     ++   +    L +    
Sbjct: 450 TLAARARNALATFLSLVGQLHAETGEMELAERIDHLLMRSGLREHWAKESRGGLDSESRT 509

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E    L S+ S+             E +  +                  + ++    ++ 
Sbjct: 510 ENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMTLHSAKG 569

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + L GL +G++P   +              L+ + +   +    +      R  L
Sbjct: 570 LEFPIVFLVGLEDGLFPSARS--------------LEESGRLEEERRLAYVGITRARQKL 615

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
           +   +        +   + SR+L+ +      +    ++      L   R
Sbjct: 616 VLCYAESRRIHGQDNYNVPSRFLREIPRDLLHEVRPKVQVSRTASLGAAR 665


>gi|296446499|ref|ZP_06888442.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
 gi|296255995|gb|EFH03079.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
          Length = 1135

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 80/895 (8%), Positives = 197/895 (22%), Gaps = 123/895 (13%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             TLV        +     +  +   + +A  EL           +  +  I +       
Sbjct: 223  KTLVARVAGLIADGEDPRATVVLTYSNKAACELAERIGAQHPDAAAAM-WIGTFHAFGLN 281

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                        + P   I R   +A L+    +      +DLY              + 
Sbjct: 282  LIQRFHREMGYESEP-GLIDRPDAIALLLDRVASLDLKHYRDLY-----------DPTMK 329

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYG--------MWWLLAADFLKIASKYWTERL 199
            L   L   I   + E    +   AL                    A  +    + + +  
Sbjct: 330  LRDVLGA-ISRAQDEVVSPDRYEALAAAMARDADASGTGREAAAKAHEVARIYRCYEDIK 388

Query: 200  VELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
             E          +  +     RA+    ++     I+I        A+ RL+  + +  N
Sbjct: 389  RERGRVDFGDLVVRCVTFLEARADVRQQLRAEFRHILIDEYQDVNRASVRLLQALTD--N 446

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
            G  +    D       +   +  +     +                   +I         
Sbjct: 447  GRNLWCVGDIRQSIYRFRGASSFNLARFRTEDFSGGTGGRLDVNFRSTQEIVDAYGAF-- 504

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                 + G +    K+        +       +    +    + +  + A N        
Sbjct: 505  AKDMPVTGATKASLKANRGASGHPVEFRTAQGDNGAEMDALAASIEALNASNR------- 557

Query: 375  AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                      + +  A++ +  +   ++   L   GI +       L        L + L
Sbjct: 558  ----------SYRHQAVLCSGNDRLNKIGAGLEARGIPVLYLGN--LFERPEVRDLLAWL 605

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            + +                LA        +          A           DL    + 
Sbjct: 606  SLLIDPRAAGLARRAAVPALALSLAEVAAILAHARGQSGPAPLAWCRDAISSDLSPEGIA 665

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
             +A  +  T                                            L + D T
Sbjct: 666  ALAHHREVTEGLGP------------------------------DADPWYALALFLLDRT 695

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            +   T      +    +   +W                +       + I  + +++   D
Sbjct: 696  RTAATIASAADVGSRAQGIAVWQFMNFVRAQPGGGYRTQRL----LDRIRQLVLLSDDRD 751

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ----- 669
               +    +  + + ++    S+ L F  + + G+N    P++                 
Sbjct: 752  LRNLPDAAKGINAVRLMTMHGSKGLEFPVVHIPGMNLNTLPRSPQAPACPPPAGLVKGAD 811

Query: 670  -SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT--IASRWLQRLLVLGGTD 726
                 +   E+   Q    +   +     +   +            S ++ RL       
Sbjct: 812  GRGREITDREQREEQECLFYVALSRAEDTLILYAPDRTAAAATRQPSPFIVRLG------ 865

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                                   + P         P        + +++      P   +
Sbjct: 866  --------ADVLRTRVPIAAPGEEDPPEPNTDVTFP---CEPVLTEAQLALYERCPRRFF 914

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844
               +L+             +      H ++  + +         +N      +      +
Sbjct: 915  YTHVLETGGRR-------ASTLFMDMHEVVRRVTQALAADPGHALNAAAIAALTDRHWLQ 967

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
                    +  +R     +   F+   +     + +     P    +    I + 
Sbjct: 968  SSLATTAAEAGYRQAADAMIGYFVRSRQGRDPGLAE-----PLCFDVPGATIVVR 1017


>gi|332362566|gb|EGJ40366.1| exonuclease RexA [Streptococcus sanguinis SK1056]
          Length = 1224

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 92/854 (10%), Positives = 205/854 (24%), Gaps = 107/854 (12%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGST 236
             L  DF+   ++ + ER    NA          +             +     +++    
Sbjct: 366  ELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEILETFPEVRRFYQERYHEVMVDEYQ 425

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS- 295
             +     R++  ++    G       D       +     +  +            Q   
Sbjct: 426  DTNHTQERMLDLLSR---GQNRFMVGDIKQSIYRFRQADPQIFSDK-FKAYQEDSSQGKL 481

Query: 296  ------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                      L+ L+   +  KRL +        +         P   +    +     I
Sbjct: 482  IVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKREPNPANRASFLI 541

Query: 350  PNIQKCFSDVALIEA---DNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK 403
                K   +    E         E   +   +    +E     K   L+TA R     + 
Sbjct: 542  YEGSKESPEEEADEGLPQAVSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLIL 601

Query: 404  LELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                +  I +    G      ++   ++   L  I    +  A+  L+K P+  FG  E 
Sbjct: 602  AAFEQHQIPLVPDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDEL 661

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                 + + E       +   + ++ + L    +  +         ++            
Sbjct: 662  ARLSLQASQERSQENLYEKLLNALEGRGLNPALVTQELQKKLQHFHETLQGWRTYSKTHS 721

Query: 523  LVDHILQCITP------LVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNL 575
            L D I +          + T            ++S    +   +  + +          L
Sbjct: 722  LYDLIWKIYQDRFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRIL 781

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              + +    S   +   +    +  +  + ++     +         + SS+  IL   +
Sbjct: 782  ENQHDL--ASVPVAAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTK 839

Query: 636  SRL--LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
                    D  +             + +    +   ++L L +  + +         A  
Sbjct: 840  GVGIKYVADVSVSVEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAET 899

Query: 694  TRHLI--------------------YTRSLRENNIPTIASRW-----------LQRLLVL 722
              +L+                     + SLR          +                 +
Sbjct: 900  KLYLVGKGSQEALDKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFV 959

Query: 723  GGTDFFDNLKKR-GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-IN 780
               +       R  +  L     L    +    +R         +  +   S I+   + 
Sbjct: 960  TDEELTAEEIGRINEPVLFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVR 1019

Query: 781  DPYAV--YARRILKLDFIPHFKKDPDRT-------------------DRGTLFHNIITEL 819
             P  +  +   I+  D +    +                          G+  H ++  +
Sbjct: 1020 TPSQIKKFYEPIMDTDGLDIMDERAAFRPQPNFDLPDFGKKAKVTGAQVGSAVHELMQRI 1079

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                        + L +   D   +K+   P I   +           L  E   +    
Sbjct: 1080 PLDNRPSMAVLRSALAQVQADDAVKKQIQLPKIASFFETDL-----GLLLIENSDR---- 1130

Query: 880  KIFVNIPAKM----AIESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
             +    P  M            L G  D   +       + + DYKT             
Sbjct: 1131 -VRREAPFAMLKQDEDSGQEFVLRGILDGYLLFED---RIILFDYKTDKYKAPSELIARY 1186

Query: 934  DPQLSLEAAALKAG 947
              QL L A AL   
Sbjct: 1187 RGQLDLYAQALSRS 1200


>gi|294011636|ref|YP_003545096.1| putative UvrD/Rep helicase [Sphingobium japonicum UT26S]
 gi|292674966|dbj|BAI96484.1| putative UvrD/Rep helicase [Sphingobium japonicum UT26S]
          Length = 1147

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 76/767 (9%), Positives = 178/767 (23%), Gaps = 96/767 (12%)

Query: 215  MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCH 265
            +     + +      I++  +  +  +  +++  +A                +    D  
Sbjct: 387  IADWIRYKLDQRIDHILVDEAQDTNVSQWQIVGALAAEFFAGEGAKGDRVRTLFTVGDFK 446

Query: 266  IPTAIWNTITEKSTNITSSNTTYST----------HPQYSLAKLLDFLDIKREDVKRLGN 315
                 +   + ++                        Q+S       LD+    +  L  
Sbjct: 447  QAIFGFQGTSPEAFRAAQIVFQRHAEDASQMFHDLSLQHSFRSTPAVLDVVDRTIATLSA 506

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                +    +    +   P    +      +  I  +           AD ER  A +IA
Sbjct: 507  ERFGLEAGEVRHVSANRFPGEVLLW-----KPVIAGLSDEAEGEEDWAADQERVLAQTIA 561

Query: 376  IALRMSLDE------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
              +R  +D+                  L+     LAR +   L    + +     + L+ 
Sbjct: 562  RQIRQWIDDGLMLESRGRSVTAGDIMILVRRRSELARLIVARLYEEKVAVAGIDRLRLNA 621

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
             L    L + L    +  D + +A L+  PL  +   E         +            
Sbjct: 622  PLAVRDLLAALRFAVQPEDDLNLAALLVSPLIGWTQDELMDRLIGRRV------------ 669

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
                L   +   +                          ++   +     LV     + +
Sbjct: 670  ---GLWQHLTQTLDGALLEPLRGLLGQADFTTPYRYLEAILSGPMDGRRRLVERLGAEAA 726

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                  ++           ++           WF+     +    +   +    +  +  
Sbjct: 727  DPIEELLNAALDFENDDYPSLQRFID------WFDRGEVEIVRDAAAQGDMLRLLTVHGA 780

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
            + +     ++    + P     +                      L     P    +   
Sbjct: 781  KGLQAPIVILADACLDPDAGNRAG--------------------SLEWNGLPIIAPRKGE 820

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
                +       +A +        +         +                      V G
Sbjct: 821  RHGEIGRVAEEASAVERAEHWRLLYVALTRAEERLVVTGSLGPRAKGEVKPESWYAAVEG 880

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF---PPLEAQPRTYSFSEIKQLIN 780
                 D   +    +    R   + T  P              +        +  +    
Sbjct: 881  ALISLDAEWEADPLWGARRRWRGHETLPPKAAEADVAENGADHDEPDWLRKPAPAEARPP 940

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             P A  A     + + P      D  +RG   H +   L +   +          +   D
Sbjct: 941  RPLAPSAAVEDDVPYPPPTPAMRDAAERGRWLHRLFERLAEVPPDDR--------RARAD 992

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
                ++ L        RH   + +   +   +             P    +      + G
Sbjct: 993  KWLAQQGLGDEAR---RHDVIEQALRVIGDPQYAALFGPDALAEAPIAAVVGEA--VIAG 1047

Query: 901  FADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945
              DR+  +    V + D+KTG        +  +    Q++  AAAL+
Sbjct: 1048 TVDRL-RIGEDLVQLVDFKTGRISPLAVEEVPLAHVRQMAAYAAALQ 1093


>gi|15671985|ref|NP_266159.1| subunit B of ATP-dependent exonuclease [Lactococcus lactis subsp.
           lactis Il1403]
 gi|81538648|sp|Q9CJJ0|ADDB_LACLA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|12722838|gb|AAK04101.1|AE006239_3 subunit B of ATP-dependent exonuclease [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 1099

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 68/207 (32%), Gaps = 19/207 (9%)

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI--NKN 827
            S S  ++  N  Y  +    L L+   +     +    G  FH +  +++++     +N
Sbjct: 755 ASVSSFERFYNCEYQYFLETTLGLETFENID--INSKIVGNFFHEVFEKVMQEEALSAEN 812

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS--SIEKIFVNI 885
             E    +   +DS++ +                +I        ++  S   ++ +    
Sbjct: 813 FDEKLTKVLHDVDSNYSRYFTHDATARFTWTNLEEIVRQTATVLKETVSTDELKTLLTES 872

Query: 886 PAKMA------IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQL 937
              +            I+L G  DR+D L S ++   DYK+      +   A   +  Q 
Sbjct: 873 SFGLPKSELGNFSVDDIYLRGRIDRLDQLSSDYLGAIDYKS-SAHSFKLQDAYDGLSLQF 931

Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIR 964
                 +K         +K+    Y++
Sbjct: 932 MTYLDVIK----EAFPNQKIWGALYLQ 954


>gi|127514313|ref|YP_001095510.1| DNA-dependent helicase II [Shewanella loihica PV-4]
 gi|126639608|gb|ABO25251.1| ATP-dependent DNA helicase UvrD [Shewanella loihica PV-4]
          Length = 726

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 73/687 (10%), Positives = 169/687 (24%), Gaps = 117/687 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+     T +A  E+R    +++G     +  I +   +           + NL      
Sbjct: 56  SILAVTFTNKAAAEMRERVEKVSGSNMGRM-WIGTFHGLAHRLLRTHYQDA-NLPQSFQI 113

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +    +L RLI      L    K   P           +                 +  +
Sbjct: 114 LDSDDQL-RLIKRILKSLNLDEKQYPPRQAQGYINGKKD-----------------QGLR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +           + +  + LKI  + + E              +             
Sbjct: 156 PKHI-------DAGGFPIEQNLLKI-YQVYQESCDRAGLVDFAEILLRAHELWLNKPHIL 207

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A      +++   D       W     ++ +
Sbjct: 208 EHYQERFKNILVDEFQDTNAIQYAWIRVLAGSTANVMIV--GDDDQSIYGWRGAQVENLH 265

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                               +  +              +     
Sbjct: 266 RFLQDFPA--------------------------AQTIRLEQNYRSSGNILNASNELIAN 299

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398
           N D L  K+    K    + L  A NE +EA  I   +    D        A++      
Sbjct: 300 NPDRLGKKLWTEDKDGEKIGLYCAFNEMDEARFIVGRITDWQDMGGNLSDCAILYRSNAQ 359

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L   G+   I  G+              L  I   ND  A   ++  P    G
Sbjct: 360 SRVLEEALLHKGMAYRIYGGLRFFERQEIKDAMGYLRLISNKNDDAAFERIINTPTRGIG 419

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                + R+                   +L                          ++K 
Sbjct: 420 DRTLDILRSTAR--------------QQELTLWQTCL----------------RLLDEKV 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           L+    + +   +  +VT +        +       + +            +    +   
Sbjct: 450 LSGRAANAVRSFMDLIVTLQQETAEQSLHRMTDHVIQASGLKAMYEAEKGEKARARVENL 509

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           EE  T +  F    +     + NA      ++              +  + ++    ++ 
Sbjct: 510 EELVTAARTFVMPEDLEDMGELNA-----FLSHAALEAGEGQADAFTDAVQLMTLHSAKG 564

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHL 697
           L F  + + G+ EG++P              S + +   ++   +    +       + L
Sbjct: 565 LEFPMVFMAGVEEGIFP--------------SQMAMDEGDRLDEERRLCYVGMTRAMKQL 610

Query: 698 IYTRSLRE----NNIPTIASRWLQRLL 720
             T +              SR+++ + 
Sbjct: 611 YITYAESRRIYGRENYARPSRFIKEIP 637


>gi|330993524|ref|ZP_08317459.1| putative DNA helicase II-like protein [Gluconacetobacter sp.
           SXCC-1]
 gi|329759554|gb|EGG76063.1| putative DNA helicase II-like protein [Gluconacetobacter sp.
           SXCC-1]
          Length = 737

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 71/703 (10%), Positives = 184/703 (26%), Gaps = 122/703 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVS 104
            +     T +A +E+R     + G+ +  L  + +   +           +    +  + 
Sbjct: 63  QILAVTFTNKAAREMRERVSALLGEPAEGL-WLGTFHALCARMLRRHAEHVGLTSSFTIL 121

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +    L L + +        +  +      P              + +  +I   +    
Sbjct: 122 DTDDQLRLLKQV-------LEPYRIDTKRWPP-------------QAIMGVIQRWKDRGL 161

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
             + + A ++  +                 + +RL ++NA       + +     +H   
Sbjct: 162 VPDAITAAEDTDFANGRCA------EIYTDYQQRLKQINACDFGDLMLHMTEILRKHPDV 215

Query: 225 GTK-----GPIIIAGSTGSIPATARLMSTVA-NHPNGAIVLPGLDCHIPTAIWNTITEKS 278
             +       I++     +       +  +A      + +    D       W     ++
Sbjct: 216 LAQYHRFFRYILVDEYQDTNTIQYLWLRLLAHRGAQPSNICCVGDDDQSIYSWRGAEVEN 275

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +      P   + +L       R+ +     +      R               
Sbjct: 276 ILRFERDF-----PGARVVRLERNYRSTRQILGAASGLIAHNEER--------------- 315

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS--ALITADR 396
                               V +I   +  +EA  +   +     +    +  A++    
Sbjct: 316 ----LGKTLHPGREDAEGEKVRVISVQDSDDEARMVGAEVERLRADGHPMAEIAILVRAG 371

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
              R  +  L   G+   +  G+            + +  + + +D +A   ++  P   
Sbjct: 372 FQTRAFEERLITLGLPYRVVGGLRFYERAEIRDAIAYMRVVNQPSDDLAFERIINVPRRG 431

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G               +  R  +       L+ L    I  +                 
Sbjct: 432 VGTTGL-------QKMHMHARARQMPLTAAVLEMLAAGEIRGRAK--------------- 469

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                   + +   +  + T +         ++I    + +                 L 
Sbjct: 470 --------EQLAALMRSIATTREMLGREGHVVAIDHLLEDSGYIDMWKADKSPDAPGRLE 521

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                        +++ + +  + N   +++ +  ++D E        + ++ I+    +
Sbjct: 522 ----------NLKELVRSLADYE-NLSGFLEHVALVMDAED----RSGADSMSIMTLHGA 566

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L FDT+ L G  EGV+P     +         +  LK  E+    A   +      R 
Sbjct: 567 KGLEFDTVFLPGWEEGVFPSQRTLD---------EGGLKGLEEERRLA---YVGITRARR 614

Query: 697 L-IYTRSLRENN----IPTIASRWLQRLLVLGGTDFFDNLKKR 734
           L I + +            I SR+++ L         D    R
Sbjct: 615 LAIISHAANRRIYGNWQSAIPSRFVEELPAEHVETRGDTANSR 657


>gi|237786046|ref|YP_002906751.1| putative ATP-dependent DNA helicase II [Corynebacterium
            kroppenstedtii DSM 44385]
 gi|237758958|gb|ACR18208.1| putative ATP-dependent DNA helicase II [Corynebacterium
            kroppenstedtii DSM 44385]
          Length = 1226

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 89/299 (29%), Gaps = 32/299 (10%)

Query: 701  RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
            R    +    +    ++ L             +     L  T + + T      +     
Sbjct: 942  RREAVDKAAELVRAAMEDLKAESADPGKGYTPQADPGTLAATWENETTALIEEARAAYVS 1001

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
                      + SE+     DP A  ARR  +               RGT FHN +    
Sbjct: 1002 HTDVPLGLELTTSEMMLASADPEAF-ARRRARPVPFKPNPY----AKRGTAFHNWLE--- 1053

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
                       + L+    D              I +     +  +F++      +    
Sbjct: 1054 -----AELGGASALIDD--DELLGAMEDSDDDIPISQPELDHLKKAFMKSPW---AGKTA 1103

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDLLK-SGF--VDITDYKTGDNPKKETAQKLIDPQL 937
              V  P  + +   G  + G  D I   + +G     I D+KTG  P  +  ++  + QL
Sbjct: 1104 WDVERPFTLNL--GGYFIRGRMDAIFKSEKNGTPEWFIVDWKTGKKPTGQDMKRA-EIQL 1160

Query: 938  SLEAAALKAGSFSQIDCRKVANLF--YIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            ++   AL+                  Y+RL + ++   +       S DEL++  L  L
Sbjct: 1161 AMYKEALRRQLADTGTPNATIRAAFHYVRLNETYEPTDLP------SPDELAQSVLSTL 1213


>gi|2618592|dbj|BAA23380.1| UvrD [Thermus thermophilus]
          Length = 692

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 68/594 (11%), Positives = 147/594 (24%), Gaps = 68/594 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+R     +              G+V    F A  L    +     
Sbjct: 54  SEILAVTFTNKAAEEMRERLRGLVPGA----------GEVWVSTFHAAALRILRVYGERV 103

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++    +        +    ++K++  E  LS    P  A         ++D  +    
Sbjct: 104 GLRPGFVVYD-----EDDQTALLKEVLKELALSARPGPIKA---------LLDRAKNRGV 149

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA----- 219
             + L     E Y     L+   L      + E L    A       +  + A       
Sbjct: 150 GLKALLGELPEYYAG---LSRGRLGDVLVRYQEALKAQGALDFGDILLYALEAFRGGRGG 206

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I +     + P   R    +A     A ++   D       +     K+ 
Sbjct: 207 PQARAQRARFIHVDEYQDTSPVQYRFTRLLAGEE--ANLMAVGDPDQGIYSFRAADIKNI 264

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
              +       +P+  + +L                                   +   +
Sbjct: 265 LDFT-----RDYPEARVYRL---------------------EENYRSTEAILRFANAVIV 298

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
           +N   LE  +  +++    V L  A++ REEA  +A  +        +  A++      +
Sbjct: 299 KNALRLEKALRPVKRGGEPVRLYRAEDAREEARFVAEEIARLGPPWDRY-AVLYRTNAQS 357

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           R ++  L   GI   +  G+          L +         D +++  ++  P    G 
Sbjct: 358 RLLEQALAGRGIPARVVGGVGFFERAEVKDLLAYARLALNPLDAVSLKRVLNTPPRGIGP 417

Query: 460 PEKYLSRAKNAL-----ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                 +                  +       L+  V      Q           R   
Sbjct: 418 ATWARVQLLAQEKGLPPWEALKEAARTFSRPEPLRHFVALVEELQDLVFGPAEAFFRHLL 477

Query: 515 EDKELAVLLVDHIL-QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           E  +    L +         L   +    +      + D+        +     E     
Sbjct: 478 EATDYPAYLREAYPEDAEDRLENVEELLRAAKEAEDLQDFLDRVALTAKAEEPAEAEGRV 537

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
            L      K L      ++     +       +  +  L +   +       + 
Sbjct: 538 ALMTLHNAKGLEFPVVFLVGVEEGL-LPHRNSVSTLEGLEEERRLFYVGITRAQ 590


>gi|117920688|ref|YP_869880.1| exodeoxyribonuclease V subunit gamma [Shewanella sp. ANA-3]
 gi|117613020|gb|ABK48474.1| exodeoxyribonuclease V, gamma subunit [Shewanella sp. ANA-3]
          Length = 1234

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 93/843 (11%), Positives = 211/843 (25%), Gaps = 94/843 (11%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   L    R       LL S  I V +      LR E  +  G  + +      L   
Sbjct: 12  VLCAHLAAYLRQPLPGAGLLQSEHILVQSPGMSTWLRLEIAKQNGIAAALE---FPLPSS 68

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +   DLL +       +      +L +L+    ++        Y    +    S A 
Sbjct: 69  FIWQLCHDLLPNVPKENAFTKAAMTWKLMQLLPRLLDEPSFGPLRHYLGHTIDNLESSAA 128

Query: 145 -----------------AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLA 184
                               L   +ADI D        W                     
Sbjct: 129 DTHSNHQLGAISADDIKLYQLCGRIADIFDQYLVYRPDWIAAWEANEPLESLKLNEEQSW 188

Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPAT 242
              L  A   +    +  +          L+ A  +           + + G +   P T
Sbjct: 189 QPILWRALIAYNRDELRQSHYHRANLHQDLIAALGDSANSLAKLPQRLFVFGISSMAPQT 248

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTA----------IWNTITEKSTNITSSNTTYSTHP 292
             ++  +A+  +  I+      H                    ++       +     +P
Sbjct: 249 IDVLHQLASRIDVIILSLSPCQHYWGDIIDPRHRARMALQYAGKRQLAEQWEDKLEVGNP 308

Query: 293 QYSL-----AKLLDFLDIKREDVKRLGNVS------NEMYGRSMVISKSFLPPDTSDMRN 341
             +       +LLD L     +    G+        +     +     + +  D  +M+ 
Sbjct: 309 LLANNGKMGRELLDMLLELPPEHCDFGDDVYCEPCGDPNDPHTNASMLAGVQYDILEMQT 368

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--------------DENKK 387
            D +      + +  ++  ++ AD++     S    LR                     K
Sbjct: 369 LDRVLGPDAELYQEVANRRVLTADDDSILIKSCHSPLREVETLHDHLLDLLDSDNQLTPK 428

Query: 388 KSALITADRNLARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              ++  D          +             I+       +   +   +LLN       
Sbjct: 429 DIVVMMPDVAAYAPYIDAVFAAKQGLEYIPYAIADRGAAQESPLINSFLNLLNINQSRFG 488

Query: 443 FMAIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGNK--------------NSYDIM 486
              I ++++ P  L +F   E  L   +  L+   +R  +               +    
Sbjct: 489 LTDILSILEVPAILRRFQLEEDELPLIRRWLDEAGVRWGRDEQSRLKQGVPAFEQNSWAF 548

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            +K L+L          +    Q         +       + + +  +            
Sbjct: 549 GIKRLILGYALRDDAPLYQSSPQGMHYLTVAGVEGQSAQALGKLLNFIEVLDETTQVLAK 608

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG------KTLSSLFSKIIETGSCIKA 600
             + S         L      +  +   L    +       + L++  + +    + +  
Sbjct: 609 AQAPSLRLLELTELLNAFYAPDEDEREQLQEIRDAIAALEQELLAASPADMGAQANDLDL 668

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +         + +    V  +     ++     +  R + F  + L G+N+GV+P+    
Sbjct: 669 SIEVLALWFNQRLTESRVGQRYLAG-SVNFCTLMPMRSIPFKVVCLLGMNDGVYPRVQHP 727

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA------SR 714
             F             + +   +  +   + +    L  +   R     +        S 
Sbjct: 728 VGFDLMAHLGARKGDRSRRLDDRYLYLEALLSAREQLYISYIGRSERDNSERIPSMLVSE 787

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            ++   +    +            +     L+        +   P     A P+  +   
Sbjct: 788 LIEYCQLCYLPESLAAEASNVSNEVAQQALLEAIVSHQPLQPFDPKLYQAALPQALTSHG 847

Query: 775 IKQ 777
           IKQ
Sbjct: 848 IKQ 850


>gi|317124193|ref|YP_004098305.1| ATP-dependent DNA helicase PcrA [Intrasporangium calvum DSM 43043]
 gi|315588281|gb|ADU47578.1| ATP-dependent DNA helicase PcrA [Intrasporangium calvum DSM 43043]
          Length = 854

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 82/769 (10%), Positives = 187/769 (24%), Gaps = 95/769 (12%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +          P     +     T +A  E+R     + G ++  +  + +    
Sbjct: 111 VLTHRIAWLLGKRGAQP---GQILAITFTNKAAAEMRERVEALVGPRARSM-WVMTFHSA 166

Query: 85  VEEKFTADLL-LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                  +   +       + +    L L  L+          I+DL  +     P S  
Sbjct: 167 CVRILRREAAKVGMKSTFSIYDAADSLRLMSLV----------IRDLDLDPKRYAPRS-- 214

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                +  ++++ + +  EE     +       +          +  A   +  RL + N
Sbjct: 215 ----FSAQVSNLKNDLVDEETYAAQVGE-GTSAHSHHERT----MSAAYTQYQRRLRQAN 265

Query: 204 ASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMST-----VANHP 253
           A       +  +             +     I++     +  A  +L+       V    
Sbjct: 266 ALDFDDIIMMTVNMLQAFPDVAEYYRRRFRHILVDEYQDTNLAQYQLIKELVGDGVRGPG 325

Query: 254 NGAIVLP------GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            G  V+P        D       +   + ++            +P      L       +
Sbjct: 326 EGDYVVPPAELCVVGDSDQSIYAFRGASIRNILEFE-----QDYPDARTILLEQNYRSTQ 380

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
             ++   +V      R                         +       + +    ADNE
Sbjct: 381 RILRAANSVIARNEARRAKN---------------------LWTDSGDGALIVGYVADNE 419

Query: 368 REEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            +EA  +A  +    +   +    A+       +R ++  L R G+   +  G       
Sbjct: 420 HDEAAFVAKQIDELAEHGVRPGDVAIFYRTNAQSRAIEEVLVRVGLPYKVVGGTRFYERR 479

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                 + L  I    D + +  ++  P    G   +         E +           
Sbjct: 480 EVKDALAYLRVISNPTDTVNLRRILNVPKRGIGDRAEACVAMLAERERIPFVAAL---GR 536

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT--NKNS 543
            +    +  R             + R   E      +L++  L+    L   +   +   
Sbjct: 537 AEDAPGIATRSVAAIKGFTSLLEELRTVYESGAGIAVLLEATLEQSGYLAELRASHDPQD 596

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                ++++   +     +            +   E G         +  TG   +    
Sbjct: 597 ETRVENLAELVAVAQEYDERRAE-----EFAVAAIEGGLAPGEEPEDVGPTGPLEEFLEQ 651

Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
             +      I              + ++    ++ L F  + L GL +G +P + +    
Sbjct: 652 VSLVADADEIPDSPEADAGPDLGVVTLMTLHTAKGLEFPVVFLTGLEDGTFPHSRSMGDP 711

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
                +  L      +   +                 RS          SR+L  +    
Sbjct: 712 KELEEERRLAYVGITRARERLYLTRAA---------VRSAWGAPQYGAPSRFLDEIPDDL 762

Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
                    +R        R            RP    P      +   
Sbjct: 763 LD------WQRLGPSFSGARGAGQPAVATLAARPGVRSPGNRVVVSLKA 805


>gi|317970360|ref|ZP_07971750.1| exodeoxyribonuclease V gamma chain [Synechococcus sp. CB0205]
          Length = 1083

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 91/892 (10%), Positives = 216/892 (24%), Gaps = 46/892 (5%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
             LL   L  N +  P  P LL    + V T    + L  +                   
Sbjct: 10  AELLARVLATNLQLHP--PGLLEEAQVVVNTWPTSRWLGEQLALANPAGIAANLRFPFPS 67

Query: 83  DVVEE---KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            ++ +   ++  D       +P  +       L  L  + ++     ++         L 
Sbjct: 68  SLLRQLVNQWLEDAPPQSGPDPWRAQNLVWPLLELLPELLQSPTAQPLRQWLAVRSSGLD 127

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
                   LA+ +AD ID             A+             + L+   +     +
Sbjct: 128 RLDQALWQLARAIADAIDDYGLYR------PAMLEAWLSEQPQTLPEGLQWQPELLRRLV 181

Query: 200 VELNASSPVGYQIALMRAEAEHLMKG--TKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
             L           L+R           +  P+ + G +   P    L+  ++      +
Sbjct: 182 ERLGCLPFGVRARQLIRRLEAGWRPELTSAQPLRLFGLSSLAPVQVELLQALSAVRQVEL 241

Query: 258 VLPGLDCHIPTAIWNTITEKSTNIT-----SSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
            +      +                      S             +LL+     +    +
Sbjct: 242 YMLTPCRDLWQRSGPAALSDPLAADWLLSVPSLEARFGRLGAEFQQLLEGTGESQLGQWQ 301

Query: 313 LGNV--SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
            G++  +     R      S L      +   +   ++  +       +          +
Sbjct: 302 EGDLFFAPATVARHEQREPSLLEQLQEQLVCGEPEADQPLHRDPQDRSLEFHACPGRLRQ 361

Query: 371 AISIAIALRMSLDEN----KKKSALITADRNLARRVK------LELTRFGINIDISAGIP 420
              +   +   L  +     +   ++T        +        E T   +   ++    
Sbjct: 362 LQVVRDQILQLLAADPGLEPRDILVMTPQVEAFAPLVPAVFGDAEATGVRLPWRLTDRSQ 421

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELVALRG 478
            S    +  L +LL    +     A+  ++     LA               L+    R 
Sbjct: 422 QSEAGIAQGLLTLLQLGGERLTASALENVLCCGPLLAAQQLEAGDAGELTALLQRAGFRW 481

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHILQCITPLVT 536
             +  D     S  L     +     V      L+  +     L   ++   + I  L  
Sbjct: 482 GLDGRDRGGDPSHSLGWAIDRLVLGLVLPDLPGLALGETAPMALGGSLEQQGRWIGLLRQ 541

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
             ++         + +W +     L  +  D       L              + +   S
Sbjct: 542 LLSSLRWFAQARRVPEWVEGLREQLPLLFGDGGSWAWELQTIHAALADW----QAVAGES 597

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
            ++  A    D++   +   + +    +S  L I      R +    ++L GL+ G +P+
Sbjct: 598 PLELAAPVVADVLAERLSEGSGRFGH-RSGALTISALEPMRAIPHRVVVLMGLDAGAFPR 656

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
              +  F     + +L    +            + +  +HL+ + S R+           
Sbjct: 657 QRQRPGFHLMEHRRELGDPNSGDQDRYV-LLEALLSARQHLLLSWSCRDERTG-ETLEAS 714

Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
             +                         L+ +        P                + +
Sbjct: 715 TPVRQWLELLAQQLGSSAVPLREHAANALERSNFLAMAPWPAASCDQRLLQVRQQLEQGE 774

Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
             +     +          +P        +D           L  +++     E +  + 
Sbjct: 775 --LRCQQGLAFSTPPPAPPLPQTTPAEAWSDLQRWI-QAPQGLWLEQLGIRPKEFDQPVL 831

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIP 886
            +      +      +   W       S  + E E        +    + + 
Sbjct: 832 DLEALQLGERERSSLLRREWDEEPGAASPDWRERERGRGLLPPLAAGALEVE 883


>gi|269218415|ref|ZP_06162269.1| RecB family exonuclease [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211526|gb|EEZ77866.1| RecB family exonuclease [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 304

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 80/243 (32%), Gaps = 21/243 (8%)

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
            ++    S S  K     P     R + +L   P  +       RGTL H+++  L    
Sbjct: 6   MSRHAALSPSRAKDFKQCPLMFRFRTVDRLPEPPSLE-----ALRGTLVHSVLEHLYDGP 60

Query: 824 INKNTPEINH-LMKQIIDSHFE------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
               T E    L+    ++H E           P     W      +  ++   E    +
Sbjct: 61  AAARTEEAAQGLLLPRWNAHLESKPRDRDLFEGPAHLETWLGSARTLIGNYFRMEN--PT 118

Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936
            IE           + S G+ + G  DRID   +G + I DYKTG +P      + +  Q
Sbjct: 119 FIEPAAREQFVNARLAS-GLAVRGIVDRIDEAPNGALRIVDYKTGKSPGPRFQDEAL-FQ 176

Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY--SADELSEKSLKNL 994
           +    AA+           ++    Y++  +    D + +D        D +     + L
Sbjct: 177 MRFYTAAIALSRGKLARRTQI---IYLKDGRTLTYDPVPDDVDAVVFELDSIWNAIEERL 233

Query: 995 IEI 997
              
Sbjct: 234 DAA 236


>gi|160900763|ref|YP_001566345.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
 gi|160366347|gb|ABX37960.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
          Length = 822

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 73/710 (10%), Positives = 169/710 (23%), Gaps = 101/710 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            S+     T +A +E+ +    +     +      I +   +      A      +    
Sbjct: 70  GSILAVTFTNKAAKEMLARLSAMLPYNVRGMW---IGTFHGLCNRLLRAH-----HQAAK 121

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +S+  ++L+    +   +        D     P              K L   I   + E
Sbjct: 122 LSSTFQILDTQDQLSAVKRLCKQFNVDDERFPP--------------KQLQYFIAGCKEE 167

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA---LMRAEA 219
             +  D+ A   +                 + + E+    +        +    L+R +A
Sbjct: 168 GMRPGDVVANDPDTRKK---------VEIYQLYEEQCQRESVVDFGELMLRSYELLRDDA 218

Query: 220 EHLMK--GTKGPIIIAGSTGSIPATARLMSTVA------NHPNGAIVLPGLDCHIPTAIW 271
                       I++     +     + +  +A             V+   D       +
Sbjct: 219 ALRAHYQRRFRHIMVDEFQDTNKLQYQWLKQLAGDMVDGRLQATGSVIAVGDDDQSIYAF 278

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                 +                        L+        + + +N +           
Sbjct: 279 RGARVGNMQDFVREFDVRQQI---------KLEQNYRSYSNILDCANALI---------- 319

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KK 388
                    N+  L   +   Q     V + EA  +  EA  +   ++  + ++    ++
Sbjct: 320 -------SHNSQRLGKNLRTTQGPGEPVRIYEAPTDMAEAQWMVEEIQQLVKKDGWQRQE 372

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            A++      +R ++ +L    I   +  G+            + L  +   +D  +   
Sbjct: 373 IAVLYRSNAQSRVIESQLFNAAIPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFLR 432

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
           +V  P    G       +        +L    ++        L                 
Sbjct: 433 VVNFPPRGIGARSVETLQDAARSAGCSLHDAVSAVPGAPGTKLAGFVAKIDVLREQTQGR 492

Query: 509 QSRLSEEDKELAVLLVDHILQ------CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
             R   E  E    L++H          I  L        S                   
Sbjct: 493 TLREIIEAIEEESGLLEHYRNEKEGADRIENLQELVNAAESFVTQEGFGRDAVALPLDEH 552

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI-----KANAIEWIDIITRLIDGET 617
           +      +   +   +     L +  +    T + +               +T       
Sbjct: 553 DGARALTQSPASQGLDPALPLLDTPLTPPAGTVAGMVDADTGETLSPLAAFLTHAALEAG 612

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                     + ++    S+ L FD + +GG+ E           F       D      
Sbjct: 613 DNQAQAGQDAVQLMTVHASKGLEFDAVFIGGVEE---------GLFPHENAMMDRGGLEE 663

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSL----RENNIPTIASRWLQRLLVLG 723
           E+ +   A    +    + L  + S            + SR+   L    
Sbjct: 664 ERRLAYVA----ITRARKRLYLSHSQTRMLHGQTRYNVKSRFFDELPDEA 709


>gi|218708694|ref|YP_002416315.1| exonuclease V subunit gamma [Vibrio splendidus LGP32]
 gi|218321713|emb|CAV17667.1| Exodeoxyribonuclease V gamma chain [Vibrio splendidus LGP32]
          Length = 1158

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 87/745 (11%), Positives = 196/745 (26%), Gaps = 89/745 (11%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+ E  +  G  + I      L           +L         +   
Sbjct: 34  QILVQSPGMSQWLKMELAKEFGVAANID---FPLPATFIWDMFTQVLPDVPKRSAFNKEA 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW- 166
              +L  L+        D    L  +  L      +    LA+ +ADI D       +W 
Sbjct: 91  MTWKLMSLLPA----KLDHPDFLPLQRYLENDEDDSKLYQLAEKIADIFDGYLVYRPEWM 146

Query: 167 ------EDLHALKNEKYGMW--WLLAADFLKIASKYWTERLVE-LNASSPVGYQIALMRA 217
                 E +  L +++      W             + + L +  +           + A
Sbjct: 147 AMWEAGEPVAELIDDEGQQEHPWQPILW-----QALYEKTLSQGQSKYHRGNLYHDFIEA 201

Query: 218 EAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN--- 272
            A+    ++     + + G +   P     +  +    +  ++      H    I +   
Sbjct: 202 LAKQQGQLQHLPKRLFVFGISSLPPRYMDALKALGEQIDVHLMFTNPCQHYWGDIRDRKY 261

Query: 273 ----------------------TITEKSTNITSSNTTYSTHP-QYSLAKLLDFLDIKRED 309
                                        +   +N     H  Q     LL  +     D
Sbjct: 262 LARVEAQRRKQFALVDGLPELEGEASPLKDGIEANVEDELHTSQAVGNSLLASMGKLGRD 321

Query: 310 VKRLGNVSN----------EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
              L + S+          E       +    L  +     +     N    ++     +
Sbjct: 322 NLFLLSQSDSEEHEFFIDVERDNLLHQLQADILQLEEHQDDHILDSSNHKQVVELGDRSL 381

Query: 360 ALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFG 410
            +    +   E   +   L    D +     +   ++ +D N        +         
Sbjct: 382 TVHACHSPMREVEVLHDQLLAMFDADPTLKPRDIIVMVSDINAYSPAIQAVFGNAPGERY 441

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAK 468
           I   IS       +   +    L+           +  L++ P  +A+FG  E    +AK
Sbjct: 442 IPYSISDRTADQESPILTAFMQLVALPNTRCLASELLELLEIPAMMARFGIDEFQFEQAK 501

Query: 469 NALELVALRGNKNSYDIMD-----------LKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
             +E   +R   ++    +           L  +    +    +++              
Sbjct: 502 QWVEEAGIRWGVDASTATEFDLPATEQNTWLFGIQRMLLGYAMSDSAGLFETEHSPIAAY 561

Query: 518 ELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                +   +   +          +       SI  W +  +  + +    E      L 
Sbjct: 562 NEVQGINAELAGKLAHFIDRIAHYRQRLTETQSIDMWRETLLQMIDDFFAVELEGEVVL- 620

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            +     LS L  ++ +     + +       +   + G  +  +      +     +  
Sbjct: 621 -KSIRDALSQLNEQLDDALYEQELSPSIIYQYLNNKLSGARISQRFLAG-QVNFCTLMPM 678

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           R + F T+ L G+N+GV+P++     F     ++    ++             M +    
Sbjct: 679 RSIPFKTVCLLGMNDGVYPRSMPPEGFDLMNGRTRPCDRSRRDDDRYL-FLEAMLSAQEC 737

Query: 697 LIYTRSLRE--NNIPTIASRWLQRL 719
           L  +   R   +N   + S  +  L
Sbjct: 738 LYISYVGRSIQDNTERVPSVLVSEL 762


>gi|119025711|ref|YP_909556.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765295|dbj|BAF39474.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC
           15703]
          Length = 879

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 75/716 (10%), Positives = 177/716 (24%), Gaps = 94/716 (13%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVV 85
             L     +   +    +S+     T +A  E+R   + + G ++       I +     
Sbjct: 42  RVLTRRIAWLLAHGFWASSILAITFTNKAAAEMRERLVTLVGPEAEHMW---ISTFHSAC 98

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                 D            +I    +  RL+ +    L    K   P   L       NA
Sbjct: 99  VRILRRDGKEIG--LKSGFSIYDTADSERLVKLIAADLNIDTKRYTPRMLLGKISDCKNA 156

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD---FLKIASKYWTERLVEL 202
                 L    D ++     +             + + A D    + +    +  RL   
Sbjct: 157 ------LVSWKDQLKKANCDY-------TPGQRGYQVSAGDVDELVAVVYAEYQHRLALA 203

Query: 203 NASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
           NA       +  +             +     I +     +  A   L+  ++       
Sbjct: 204 NAVDFDDLIMRTVELLQTCPQVSEYYRHRFRYIFVDEYQDTNHAQYVLVRELSGID---- 259

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
                    P            +  +     S    Y+        +I+  +       +
Sbjct: 260 -----SDEQPDPQARGAGRVGPSWITV-VGDSDQSIYAFRGADIR-NIQDFEQDFPNAKT 312

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
             +              +    +N +    K+         +    ADN ++EA  IA  
Sbjct: 313 IMLEQNYRSTQTILDAANAVIAKNENRKPKKLWTALGQGDKIVGYAADNAQQEAGWIANE 372

Query: 378 LRMSL---DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
           +       D   +  A++      +R ++  +    +   +  G             + L
Sbjct: 373 IARIHTEEDVAYRDIAIMYRANAQSRSLEEAMINANLPYQLVGGTKFYERREVKDAIAYL 432

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            AI    D + +  ++  P    G   + L         +    +    D ++       
Sbjct: 433 QAIVNPADNVNVRRILNVPKRGLGARAEGLVAGYADAHGLTFFESIEHMDQIE------- 485

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                              +   ELA    +H  +    +                S   
Sbjct: 486 -----GMTGRTTKPLGAFRDLMHELADFAKEHDSKPSEVVAEVLDK----------SGLL 530

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           +                L  L         ++             A    +++    + D
Sbjct: 531 EELQRSEDPQDASRVDNLSQLQSVAAEFEQNTP-----------DATLAGFLETTALVAD 579

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
            + +  + E S  + ++    ++ L +  + L G+ +G +P   A              +
Sbjct: 580 SDQLPGEGEDSGKVTMMTLHTAKGLEYPYVFLTGMEQGTFPHQRA--------------M 625

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGT 725
           +   +   +    +      +  +Y      R+        + S++L  +      
Sbjct: 626 EDTSELSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANDMMPSQFLDEIPDELID 681


>gi|258510684|ref|YP_003184118.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477410|gb|ACV57729.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 756

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 63/582 (10%), Positives = 140/582 (24%), Gaps = 77/582 (13%)

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATA 243
                 +  RL E  A       +  +    +        +     I +     +  A  
Sbjct: 176 GDVYLAYERRLRENQALDFDDLLVKTVELFRKVPDVLAYYQHRFSHIHVDEYQDTNHAQY 235

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            L+  +A       V+   D       W     ++            +P   + +L    
Sbjct: 236 VLVKLLAERRRNLCVV--GDSDQSIYGWRGADIRNILEF-----QRDYPDARVIRL---- 284

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                                    +     +     N   LE  +   +       L  
Sbjct: 285 -----------------EQNYRSTGRILRIANQVIQHNQMRLEKNLWTDRGEGEKAKLFV 327

Query: 364 ADNEREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
           A +ER EA  +A  +   +      +  A++      +R ++    + GI   I  G+  
Sbjct: 328 APDERVEADWVADEIARMVANGREYRDVAILYRTNAQSRVLEEAFLQRGIPYRIYGGLRF 387

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                   + + L  I   ND ++   +V  P    G                       
Sbjct: 388 YERREVKDVIAYLRLIANPNDDVSFLRVVNVPKRGIGDTTLEKLAEYAR----------- 436

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
            +    L    L  +    +       QS +              +      L+     +
Sbjct: 437 -HRGTSLFEAALHALEAGISKKAASALQSFVELIQTLQLQRAFLPLTDLTDELLDRSGYR 495

Query: 542 NSTCGNLSISD--WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
            +     S+      +     L      +   +P+       + L+              
Sbjct: 496 EALRAERSLEAENRLENLDEFLSLTREFDEDGVPDGEMGALEQFLTH------------- 542

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                 + +++          + E    + ++    ++ L F  + L GL EGV+P   A
Sbjct: 543 ------VALVSDADLPGGRPGRREDLDEVSMMTLHAAKGLEFPVVFLVGLEEGVFPHRRA 596

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            +       +  L      + + +      +      +++             SR+L  +
Sbjct: 597 LDGGEELEEERRLCYVGITRAMER----LYLTTCRSRMLF-----GERRSFTPSRFLSEM 647

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
                    +     G  + D    +             P  
Sbjct: 648 PASDIERAGEEDAMFGWGWRDARAGVRAPAHAVADAASGPRM 689


>gi|254483238|ref|ZP_05096470.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2148]
 gi|214036461|gb|EEB77136.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2148]
          Length = 665

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 69/589 (11%), Positives = 157/589 (26%), Gaps = 88/589 (14%)

Query: 174 NEKYGMWWLLAADFL-KIASKYWTERLVELNASSPVGYQIA---LMRAEAEHLMK--GTK 227
            E+        A+ L   A + +   L   NA       +    L     + L K   T 
Sbjct: 150 PEQAVAHAKSPAEILCAQAYRRYQRALKAYNALDFDDLILLPTVLFEQNPDTLEKWQNTI 209

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
             +++     +  +   L+  +        V+   D       W     ++      +  
Sbjct: 210 HYLLVDEYQDTNSSQYLLVKQLVGVRGALTVV--GDDDQSIYAWRGARPENLVQLQDDFP 267

Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                     KL+                   +       S+     +T    N  + + 
Sbjct: 268 G--------LKLVK------------------LEQNYRSTSRILKAANTLIANNDHVFDK 301

Query: 348 KIPNIQKCFSDVALIEADNEREEA-ISIAIALRMSLDENKK--KSALITADRNLARRVKL 404
           K+ +       + +I   +E  EA   +A  L   L +  +    A++    + +R ++L
Sbjct: 302 KLWSEIGYGDPLRVIRCSDENHEAEQVVAEILDHKLRKRTRFGDYAILYRGNHQSRLIEL 361

Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
            L +  +   +S G           + + L  +   ND  A   +   P  K G      
Sbjct: 362 ALQQQQVPYHLSGGTSFFARNEVKDIMAYLRLLINENDDNAFLRIANVPRRKLGASTLES 421

Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                        G+  +     L   +    +       +   +      D+       
Sbjct: 422 L------------GSFANEQHCSLSQAIGRVGSGTLPEAGLGRLREFRLWMDRIRRQCEG 469

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
              +  I  ++     ++      S     +  ++ +  +    ++ +            
Sbjct: 470 GGGISAIRQMIRDMEYEDWLNQLSSSEQVAERRMSNVHFLIDSLNKVMVE---------- 519

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
                        ++ +      ++  L++ +    +      + ++    S+ L F  +
Sbjct: 520 -----------EGVELDDAIARLVLRDLLEQQE--EEDSSPDNVQLMTMHASKGLEFPHV 566

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
            + G+ E            L      +      E+ +               +   R   
Sbjct: 567 FIIGMEEN----------LLPHRASVEDGNIAEERRLAYVGITRAQQTLAMTMAAKRRQF 616

Query: 705 ENNIPTIASRWLQRLLVL------GGTDFFDNLKKRGQCYLDWTRKLDY 747
              I    SR++  L         GGTD     ++RGQ  L   R L  
Sbjct: 617 GETINCEPSRFIDELPQDDLTWQGGGTDDEQANEERGQETLAGLRGLFA 665


>gi|327459916|gb|EGF06256.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1057]
          Length = 762

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 69/627 (11%), Positives = 171/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                    K + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYKAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLIYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRNVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  ++     +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVEKIRDFASSQEMSLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRERLDDYTVTDLVEAVLEKTGYAASLAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  S  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPSD-ESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRAS 587


>gi|330880966|gb|EGH15115.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 727

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 62/700 (8%), Positives = 174/700 (24%), Gaps = 123/700 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           SV     T +A  E+R    ++ G     +  + +   +      A              
Sbjct: 58  SVLSVTFTNKAAAEMRHRIEQLMGISPAGM-WVGTFHGLAHRLLRAHWQE---------- 106

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                  A L+  ++    D  + L     +   +      W A+     I+  + E  +
Sbjct: 107 -------AGLVQTFQILDSDDQQRLVKR--VMRELGLDEQRWPARQAQWFINGQKDEGLR 157

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            + + A  +        L    +K   + +                +  +    ++    
Sbjct: 158 PKHIQASGD--------LFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRDNPGLL 209

Query: 226 -----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    +++     +       +  +A   +  +V  G D       W     ++ +
Sbjct: 210 AHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMV--GGDDDQSIYGWRGAKIENIH 267

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
             SS+   +                              +       +      +   + 
Sbjct: 268 QYSSDFPDTE--------------------------VIRLEQNYRSTASILKAANGLIVN 301

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNL 398
           N+  L  ++         + L  A NE +EA  +   +  +L    ++   A++      
Sbjct: 302 NSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIAILYRSNAQ 361

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L R  I   I  G             + +  +    +  A+  ++  P     
Sbjct: 362 SRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVP----- 416

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                       +    +   +      D+      R+                      
Sbjct: 417 ---------ARGIGEKTVEAIREHARHADVSMWEAMRLLVANKG---------------- 451

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
               L       +   +    N ++    + +       +     +              
Sbjct: 452 ----LTGRAATALGGFIELIENLSAKAMEMPL------HLMTQTVIEQSGLITYHEQEKG 501

Query: 579 EEGKTLSSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
           E+G+       +++           + +       +             E   ++ ++  
Sbjct: 502 EKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHEDSIQLMTL 561

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + L G+ EG++P                ++L+   +   +    +     
Sbjct: 562 HSAKGLEFPHVFLVGMEEGLFP--------------HKMSLEEPGRLEEERRLAYVGITR 607

Query: 694 T-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             + L+ T +       +     + R +          ++
Sbjct: 608 AMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVR 647


>gi|39979183|emb|CAE85555.1| related to ATP-dependent DNA helicase [Neurospora crassa]
 gi|54633283|dbj|BAD66822.1| ATP-dependent DNA helicase [Neurospora crassa]
          Length = 1105

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/546 (10%), Positives = 141/546 (25%), Gaps = 63/546 (11%)

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIP 240
                 L++    +   L   N        +  +    +     +    ++I     +  
Sbjct: 174 QRGQRDLEVCYTEYQTHLERSNLLDYDDLLVRCVELLRKFPSCVSNIQTVLIDEYQDTNG 233

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
               LM  +A       ++   D       W +   K+      +   +           
Sbjct: 234 VQYELMRLLAQKHQRITIV--GDPDQSIYGWRSAEIKNLWRLLRDYPKTDEI-------- 283

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
             L+      + + ++S       ++              +       +  ++       
Sbjct: 284 -SLEENYRSSQAILDLS-----LLVIQQDKKRYQKVLKPVHDRGSRPVLRKLK------- 330

Query: 361 LIEADNEREEAISIAIALRMSLDENKK-----KSALITADRNLARRVKLELTRFGINIDI 415
                N   EA  I   +R +L  +         A++    +L+R V+  L + GI   +
Sbjct: 331 -----NASTEAEWIVAEIRRALLMSGSMLTHNDVAVLLRSASLSRHVESALGKAGIPYRM 385

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-RAKNALELV 474
             G           +   L  I + ++  A   ++  P    G               L 
Sbjct: 386 VGGFKFYERSEIKTILDYLRVIHQPDNNDAFGRIMNVPKRGIGDGTIKNLIEEAEKSSLS 445

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                             + + A QK +  +    + + ++ +E A      ++  I  L
Sbjct: 446 LYSLLVKHCRGDRTAKTKITKHAEQKISGELIRMLNGIRKKMEEAAESNPFGLVDLIEHL 505

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
           +T    +N         D  +      + + L            E+         +  E 
Sbjct: 506 LTALNFQNYLQVTYP-DDHEQRWANVQEFISLANDFVRDLHVSGEDALPEIEGLEQSKEE 564

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                    +++  ++   D +  +   E    + I     ++ L +  + +  +  G  
Sbjct: 565 E-----VLPQFLANVSLASDAQKGEEGQENKPLVTISTIHAAKGLEWPIVFIPAVYNGSI 619

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY----TRSLRENNIPT 710
           P   +                  E    +    +      + L+Y          ++  T
Sbjct: 620 PHMRS------------------EDGDEERRLLYVAMTRAQSLLYLSYPVYHSPGSSERT 661

Query: 711 IASRWL 716
             S ++
Sbjct: 662 EMSSFV 667


>gi|299535964|ref|ZP_07049283.1| ATP-dependent nuclease subunit A [Lysinibacillus fusiformis ZC1]
 gi|298728569|gb|EFI69125.1| ATP-dependent nuclease subunit A [Lysinibacillus fusiformis ZC1]
          Length = 1239

 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 86/865 (9%), Positives = 216/865 (24%), Gaps = 124/865 (14%)

Query: 193  KYWTERLVELNASSPVGY---QIALMRAEAEHLMKG---------TKGPIIIAGSTGSIP 240
            + +    +E             + ++  E +  +               +++     +  
Sbjct: 364  EQFRLAKLERGIIDFSDLEHYALQILTVEIDGALHPSPVALDMKKRFKEVLVDEYQDTNM 423

Query: 241  ATARLMSTV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN---TTYSTHPQYSL 296
                ++  V         +    D       +     K      S    +  +T  +  L
Sbjct: 424  LQETILQLVKTGEEQDGNLFMVGDVKQSIYRFRLAEPKLFMRKYSEYLESPDATGMRIDL 483

Query: 297  AKLLDFLD------------IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                                I  E V  +    N     +    +  +P +   +     
Sbjct: 484  NANFRSRKEVLNATNYVFAQIMGERVGEISYDDNASLKPAAPYDEKEIPVELVVLHPPQE 543

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---------------NKKKS 389
             E      +       L E    + EA  I   +R  +++                    
Sbjct: 544  EETTEELEELSNEATELEELKKSQYEARFIIDRIRQMMEDGTTVYDTKTKTERPLKYSDI 603

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
             ++      +  +  E    GI +   +       L   I+ ++L  +      + +A++
Sbjct: 604  VILMRSMTWSTDLVEEFKLAGIPLYAESSKGYFDALEVMIMLNVLKVVDNPYQDIPLASV 663

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
            ++ P       E    R  +          +                  +K    +  ++
Sbjct: 664  LRAPFVGLTENELAKIRLADQKVPFYDALRQFIRSEGHGVQTTTF----EKLQRFMLAFE 719

Query: 510  SRLSEEDKELAVLLVDHIL---QCITPLVTYKTNKNSTCGNLSISDWT--------KLTV 558
            +      +     L+  I         +      K        + D          +   
Sbjct: 720  NWRDLARRGSLSDLIWKIYLDTHYYEMVGAMPNGKQRQANLRVLHDRALMYEKTAFRGLF 779

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI---------- 608
              L+ +     R       +  G+    +    I +   ++   +    +          
Sbjct: 780  RFLRFIDRMRTRGDDLGTAKSIGEKDDVVRLVTIHSSKGLEYPVVFVAGMGRPFNKMDFH 839

Query: 609  ----------ITRLIDGETVKPKIEKSSTLFILGTLESRLL----NFDTLILGGLNEGVW 654
                      +         +        L +    E  +         + +    E + 
Sbjct: 840  QPYLFDQDFGLAVKAIDPENRITYTSLPFLALKEKKELEMRAEEMRVLYVAMTRAKERLI 899

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAE-------KYIGQAAHDFEMANGTRHLIYTRSLRENN 707
               + KN   +R    D              +    +  D+      RH  +      + 
Sbjct: 900  LVGSVKNWEKTRDNWQDAQSLPMNAPLQEYLRARANSYLDWVGPAVARHADFATVASTSY 959

Query: 708  IPTIA-SRWLQRLLVLG--GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
                  S W  + +       +  + +    Q  L      D   +     + +      
Sbjct: 960  KELDDQSHWWVQAIETKHYSYEIEEAMGDEVQQVLAMQEDEDLLAEITTRFQAQYVYQKS 1019

Query: 765  AQPRT-YSFSEIKQLIN-----DPYAVYARRI------LKLDFIPHFKKDPDRTDRGTLF 812
             + R+  S SEIK+L N     +P   +A  I      +        ++     + GT  
Sbjct: 1020 TRKRSKTSVSEIKRLENLQRQEEPEFYFASPIKQKTSSIAPRPAFLQEQQLTSAEIGTAV 1079

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H ++  + +   +       + ++  ++    ++ L    +   + +     + F E E 
Sbjct: 1080 HTVMQHVPQYGFSH-----INAVRDFVEDLVARQLL---TEAEGKVVPQAKIYHFFETEI 1131

Query: 873  -KIQSSIEKIFVNIPAKM-AIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPK--- 925
             +      +I   +P  +  I+  G    + G  D +   + G   + DYKT        
Sbjct: 1132 GQRFQRARQIRREMPFTISRIDEDGDAQIVQGIIDCLFEDEYGNWVLLDYKTDRIQSHFA 1191

Query: 926  -----KETAQKLIDPQLSLEAAALK 945
                  +        QL + + A++
Sbjct: 1192 QEPALSKEILGRYAVQLRVYSEAIE 1216


>gi|282864346|ref|ZP_06273402.1| RecB family exonuclease-like protein [Streptomyces sp. ACTE]
 gi|282560833|gb|EFB66379.1| RecB family exonuclease-like protein [Streptomyces sp. ACTE]
          Length = 281

 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 76/253 (30%), Gaps = 32/253 (12%)

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             P     R I +L          +   RGTL H ++  L      + T      +     
Sbjct: 3    CPLLYRFRVIDRLPEK-----PSEAATRGTLVHAVLERLFDAPAAERTAPRAKALIPGQW 57

Query: 841  SHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                +           +        W     ++   +   E+  +  +E     +  +  
Sbjct: 58   DRLLESKPELTELFAGDPEGERLAGWLGEAERLVERWFSLEDPTR--LEPAEREMFVETE 115

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            ++S G+ L G  DR+D+  +G V I DYKTG  P+     +    Q+   A  +      
Sbjct: 116  LDS-GLRLRGVIDRVDVAPTGEVRIVDYKTGKAPRP-EYAEGALFQMKFYALVIMR---- 169

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
             +       L  + L     +                E+  + L+ +   ++   +    
Sbjct: 170  -LRKVVPRRLQLVYLGSGDVLTYDPVPAD-------LERVERKLLALWDAIRLATETGEW 221

Query: 1011 HLRLSEKSNIQSE 1023
              R ++      +
Sbjct: 222  RPRPTK-LCGWCD 233


>gi|114570609|ref|YP_757289.1| ATP-dependent DNA helicase Rep [Maricaulis maris MCS10]
 gi|114341071|gb|ABI66351.1| ATP-dependent DNA helicase, Rep family [Maricaulis maris MCS10]
          Length = 763

 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 75/693 (10%), Positives = 170/693 (24%), Gaps = 116/693 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E++    +I G+    +P + +   V  +                  
Sbjct: 68  EILAVTFTNKAAREMKERVGKIIGEAVEGVPWLGTFHSVSAQI----------------- 110

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +  +    +     W  ++LA +ID  +     
Sbjct: 111 LRRHAELVDLKSSFTILDTDDQLRLMKQ--IIQAENIDEKRWTPRHLASLIDGWKNRGLM 168

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + L           W  A    +   + +  RL  LNA       +  +    ++    
Sbjct: 169 PDQLGE------DDKWAFAEGRGQDLYRIYQSRLKTLNACDFGDLLLHTLHIFKDNPDVL 222

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    +++     +  A    +  +A        +   D       W      +  
Sbjct: 223 KFYHDKFRYLLVDEYQDTNIAQYLWLRLLAQGTGNICCV--GDDDQSIYGWRGAEVDNIL 280

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               + + +T     + +L          +     +      R                 
Sbjct: 281 RFEKDFSGAT-----VIRLERNYRSTAHILGAASGLIAANRSR----------------- 318

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--DENKKKSALITADRNL 398
               L   +         V +    +   EA  +A  +   +        SA++      
Sbjct: 319 ----LGKTLWTDDAEGEKVQVRGIWDGEAEARFVAEEIENWVSGQRAYSDSAVLVRAAWQ 374

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            R  +      G+   +  G             + L  +    D +A   +V  P    G
Sbjct: 375 MRAFEDRFIMLGLPYKVIGGPRFFERAEVRDAHAYLRLVRSPEDDLAFERIVNTPKRGIG 434

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                          V +          D                               
Sbjct: 435 DTTVQKIAVTARAMGVPMTEATRVMLGTD------------------------------- 463

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                 +   +  T L  +  +          S   +L    L             +W E
Sbjct: 464 ------EIRGKARTALGVFLRDVERWREQSEQSRLDELAEIILDESG------YTAMWRE 511

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           ++    +     + E    +       ++     +   T   +      + ++    ++ 
Sbjct: 512 DKTPQAAGKLENLKELVRSMGEYDT--LEAYLEHVALLTDADRKPDEDEISLMTLHGAKG 569

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F  + L G  E V+P   + +         +   ++ E+    A      A     + 
Sbjct: 570 LEFPLVFLPGWEETVFPSQRSLD---------EGGTRSLEEERRLAYVGITRARERAIIT 620

Query: 699 YTRSLRENNI--PTIASRWLQRLLVLGGTDFFD 729
           +T +          I SR++  + V       +
Sbjct: 621 FTANRMIYGRWQTVIPSRFIDEMPVDHVEARSE 653


>gi|258512041|ref|YP_003185475.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
            acidocaldarius DSM 446]
 gi|257478767|gb|ACV59086.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
            acidocaldarius DSM 446]
          Length = 1240

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 83/915 (9%), Positives = 213/915 (23%), Gaps = 115/915 (12%)

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKG 225
                        +     +        R +E N  S    +       A        +  
Sbjct: 324  EADVRAMRPHIEVLTGVARDTLARAQSRRLEENRLSFSDLEHLAHELLAKDEGVRAALHA 383

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
                + +     + P    ++  VA       +    D       +              
Sbjct: 384  RYRYVFVDEYQDTSPIQDAIVDAVAPPGG---LFLVGDVKQSIYGFRMAEPGLFLARYRR 440

Query: 286  TTYSTHPQYS-----------------------LAKLLDFLDIKREDVKRLGNVSNEMYG 322
                   +                             +   D       +      +  G
Sbjct: 441  YAEKDGGEAIDLSANYRSRSGIVRFVNYLFGQLFHADVAGFDYADGHEMKPEAAYPDDDG 500

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                +         +     +  E       K   +   +  +    EA+ +A  +  +L
Sbjct: 501  GPCPVKIKLFFSGDAGNDRVEETEEPERADAKGEDEDEQVAREKLEIEAMWVADQIARAL 560

Query: 383  DENKKK----------------SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
            +  ++                 + L+ A       V   L   GI     +       + 
Sbjct: 561  ERQERVYDRAAKAYRPLRYQDVAILLRAGGENLNTVVQVLASRGIPAVARSSSGFFRAME 620

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA---LELVALRGNKNSY 483
                 SLL A+    D +A+A  +K P       +   +R       L        +++ 
Sbjct: 621  IRWAVSLLTALDNPLDSLALAAALKSPFVGLSDDDLAAARIACPRGPLWHAVREAARDTE 680

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE-LAVLLVDHILQCITPLVTYKTNKN 542
               D   L ++R+   +   H       L E  +E    L +  + + +      +    
Sbjct: 681  GARDALRLAVERLERWRGLAHTLAPGDLLREIAREVEIDLYLRAMPRGLARAANLEQLIR 740

Query: 543  STCGNLSISDWTKLTVTCLQNV---------CLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
                +   +      +  ++ +                   +      K L      ++ 
Sbjct: 741  LAQSHAPHAGDLYRFLAMVRGLEEADVDLGHAHGASADSVAVMTIHGSKGLEFPHVYVLC 800

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
             G     N           I       +            ++   L         +    
Sbjct: 801  LGRQFPHNKRTLALHRRLGIGATMCDVQTGVHWRTVPSIAVDQANLEASRAEEARVLYVA 860

Query: 654  WPKNTAKNPFL-----------SRVMQSDLNLKTAEKYI---GQAAHDFEMANGTRHLIY 699
              +   +   +           +     D    T E ++     A+             +
Sbjct: 861  LTRAKERLVLVGHAGKVAKLADAAEGHDDEGRLTPEAFLKGNSYASWILPALMRHPDGAW 920

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
             R    +    +      R  +    D     ++ G+      +      ++   +  + 
Sbjct: 921  LRKEAGDARAALLDAPGVRFELEVEVDGRPQGQESGEPRSSLFKAPLPPAEEVERELRRL 980

Query: 760  FPPLEAQPRTYSFSEIKQ----------LINDPYAVYARRILKLD----------FIPHF 799
            +     + R    +  ++             D   ++A R L+                 
Sbjct: 981  WQGPAWRYRAVRVASEQRGSRVSLPSKLTATDIRRLFAERELRARGRHAGSVLEDPAFVR 1040

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
            +      +RG  FH  +     +    N  ++    + +++     E +   +D      
Sbjct: 1041 QSGASPRERGVAFHAFMQRAPMQ-PYANPDDVRRAAQALLEQGLLDERMASALDP----- 1094

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI------GIHLTGFADRIDLLKSGFV 913
               +   F     +   +  +++   P    ++         + + G  D +     G  
Sbjct: 1095 -DDVLAFFASPLGRRVLAAGEVYREQPFFYRLDVRAGDAQAPVVVQGVIDCLIRDARG-Y 1152

Query: 914  DITDYKTGDNPKKETAQ---KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
             + DYKT             +  +PQ++  AAA++      +       L+++  ++   
Sbjct: 1153 AVIDYKTDQVRDASDLDRLVRAYEPQVATYAAAVR----EAVGTEPEVYLYFVHAREARS 1208

Query: 971  IDCITNDKKKYSADE 985
                    +     +
Sbjct: 1209 TMPSPLGTRLEQWAQ 1223


>gi|125717696|ref|YP_001034829.1| ATP-dependent DNA helicase [Streptococcus sanguinis SK36]
 gi|125497613|gb|ABN44279.1| ATP-dependent DNA helicase, putative [Streptococcus sanguinis SK36]
          Length = 762

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 67/627 (10%), Positives = 170/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  ++     +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRERLDDFTVTELVEAVLEKTGYSAALAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  +  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPAD-ESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPIVFLVGMEENVFPLSRAS 587


>gi|215444748|ref|ZP_03431500.1| exodeoxyribonuclease V subunit gamma [Mycobacterium tuberculosis
           T85]
 gi|289756713|ref|ZP_06516091.1| exodeoxyribonuclease subunit V gamma [Mycobacterium tuberculosis
           T85]
 gi|289712277|gb|EFD76289.1| exodeoxyribonuclease subunit V gamma [Mycobacterium tuberculosis
           T85]
          Length = 950

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 83/860 (9%), Positives = 203/860 (23%), Gaps = 56/860 (6%)

Query: 39  LNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS-LGDVVEEKFTADLLLSY 97
             P   A   + V  +   + L      + G        + + +     +   A++  + 
Sbjct: 25  PQPDPFAQELVLVAARGVERWLSQRLSLVLGCGPGRADGVCAGIAFRNPQSLIAEITGTL 84

Query: 98  NLNPPVSNIQRLLEL----ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
           + +P          L    A L   W   L   +         +          +A+ LA
Sbjct: 85  DDDPWSPEALAWPLLAVIDASLDEPWCRTLASHLGHFATTDAEAELRRGRR-YSVARRLA 143

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            +      +         L               L      W   +  + A  P      
Sbjct: 144 GLFASYARQR------PGLLAAWLDGDLGELPGDLAWQPPLWRALVTTVGADPPHVRHDK 197

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            +    +         + + G T       +L+  +A H +  + LP         +W  
Sbjct: 198 TIARLRDGPADLPAR-LSLFGHTRLACTDVQLLDALAVHHDLHLWLPHP----SDELWRA 252

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK-REDVKRLGNVSNEMYGRSMVISKSFL 332
           +               T  + +   LL+ L    RE  + L                  L
Sbjct: 253 LAGFQGADGLLPRRQDTSRRAAQHPLLETLGRDVRELQRALPAARATDEFLGATTKPDTL 312

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKK 388
                     +       ++      V +        +   +   L   L++      + 
Sbjct: 313 LGWLQADIAGNAPRPAGRSLSDADRSVQVHACHGPARQIDVLREVLLGLLEDDPTLQPRD 372

Query: 389 SALITADRNLARRVKLE----------LTRFGINIDISAGIPLSTT-LHSSILTSLLNAI 437
             ++  D +    + +                      A   L+ T    S+   LL   
Sbjct: 373 IVVMCPDIDTYAPLIVAGFGLGEVAGDCHPAHRLRVRLADRALTQTNPLLSVAAELLTIA 432

Query: 438 FKLNDFMAIATLVKHPLAK----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                   +  L +    +    F   +            +    +        L ++V 
Sbjct: 433 ETRATASQLLNLAQAAPVRAKFGFADDDLDTITTWVRESNIRWGFDPTHRRRYGLDTVVH 492

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
           +      +        S  S+   + A+ L D     +                +     
Sbjct: 493 NTWRFGLDRILTGVAMSEDSQAWLDTALPLDDVGSNRVELAGRLAEFVERLHHVVGGLSG 552

Query: 554 TKLTVTCLQNVCLDEHR--KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            +  V  L  +           + W   + +   +       + +       +   ++  
Sbjct: 553 ARPLVAWLDALATGIDLLTACNDGWQRAQVQREFADVLARAGSRAAPLLRLPDVRALLDA 612

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            + G   +    ++ TL +   +  R +    + L GL++GV+P+ +  +      + + 
Sbjct: 613 QLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVFPRLSHPD---GDDVLAR 668

Query: 672 LNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             +        +       A G   + L+ T +  +          +    +L   D   
Sbjct: 669 EPMTGERDIRSEDRQLLLDAIGAATQTLVITYTGADERTGQPRPPAVPLAELLDALDQTT 728

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
           +   R +  +    +                P         +          P A  + R
Sbjct: 729 SAPVRERILVTHPLQPFDRKNVTPGALLGAKPFTFDPAALAAAQAAAGKRCPPTAFISGR 788

Query: 790 ILKLDFIPHFKKDP------DRTDRGTLFHNIITELIKKRINKNTPEINHLM-----KQI 838
           +           D                   +   +    +    +++ L      +++
Sbjct: 789 LPAPPAADVTLADLLDFFKDPVKGFFRALDYTLPWDVDTVEDSIPVQVDALAEWTVGERM 848

Query: 839 IDSHFEKENLPPHIDIIWRH 858
           +       +        WR 
Sbjct: 849 LRDMLRGLHPDDAAHSEWRR 868


>gi|297538865|ref|YP_003674634.1| Exodeoxyribonuclease V [Methylotenera sp. 301]
 gi|297258212|gb|ADI30057.1| Exodeoxyribonuclease V [Methylotenera sp. 301]
          Length = 1158

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 90/780 (11%), Positives = 193/780 (24%), Gaps = 68/780 (8%)

Query: 168  DLHALKNEKYGMWW---LLAA--DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
             L  L        W     A   DF+ IA         E  A+                 
Sbjct: 365  ALTRLLILAERHLWIVFQAAGEVDFVAIAQSAQLALENEQGATD------------LALK 412

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
            +      ++I     + P   RL+  +       +G  +    D       +        
Sbjct: 413  LDYKISHLLIDEFQDTSPVQTRLIEKLIEGWQPDDGRTLFCVGDPMQSIYRFRKADVSLF 472

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK---SFLPPDT 336
               S       H   +  +L          V  + N   +++  +  I++   S+     
Sbjct: 473  LQASEFGI--GHLPLTRLQLSRNNRSHPAVVDWINNAFKQVFPANDNINQGAISYRKFTA 530

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITA 394
            +            P I +        +AD ++ EA  +A  +     EN      A++  
Sbjct: 531  TRPNVAGEGVTLHPLILEVTDQEESQKADLKQIEANYVADLIVKLRSENGAHYNIAVLVR 590

Query: 395  DRNLARRVKLELTRFGINIDISAGI--PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
             R+  + +  E+ R    +   A     L+         SL+ A+    D      +++ 
Sbjct: 591  SRSHLKELVSEIRRNHPALKFQAVEIEHLNERQTVQDALSLVCALHHRADRTHWLNVLRA 650

Query: 453  PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
            P       + +   A         R           +   L      +         +  
Sbjct: 651  PWCGLTLADLHALAA------DNHRATIWQLMQDKARLSRLSEDGQLRLAHVNSVLTTAF 704

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
            + + +      ++     +        +           D  + T              +
Sbjct: 705  NGQGRMPLRRWIESTWLQLGG-GKCLVDAGDNRDVQVFFDLVEKTGRSGHLDIASLELGM 763

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
              L+ + + +   S+    I     ++ +A+    +            +  ++    ++ 
Sbjct: 764  QKLYAKPDIEADGSVQFLTIHKSKGLEFDAVILPAL-----------NRQPRNGDNELVL 812

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              E  + N   LI+  L      K          +     NL+            +  A 
Sbjct: 813  WQEVVVDNHLHLIVAPLKSKAVAKTNTGADVYDFLK----NLEKTRAENELVRLLYVAAT 868

Query: 693  GTR---HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
                  HLI +    +       +  L + L       F       Q        LD   
Sbjct: 869  RAHRQLHLIASMQANKEGEIKPTANSLLQGLWPAVEADFAQATPVKQNVNAQA-GLDIKQ 927

Query: 750  KQPHYKRPKPFPPLEAQPRTY--------SFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
             +P  +R      +     T           +  + L  D        +L        ++
Sbjct: 928  FKPQLQRLPSEHFVHISNSTLIGDDIVGRPLARHEGLKADLQMNEQSDVLGDFSSERARE 987

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
               +   GTL H  +    K  +   T +     +  +     ++     +         
Sbjct: 988  IDFQKHCGTLAHLYMELFAKTDLQSWTYQRLEQCQPAMQKWLAQQGHVKQLADQGAMQVL 1047

Query: 862  KISHSFLEHEEKIQ--SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
                + L          +       +   +  +  G+      DR  +       I DYK
Sbjct: 1048 AALQTTLASAAGQWVLQNHTDSVSELSL-LQTQEDGVK-NHVIDRTFIEND-VRWIVDYK 1104


>gi|325923795|ref|ZP_08185410.1| ATP-dependent DNA helicase UvrD [Xanthomonas gardneri ATCC 19865]
 gi|325545728|gb|EGD16967.1| ATP-dependent DNA helicase UvrD [Xanthomonas gardneri ATCC 19865]
          Length = 723

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 63/693 (9%), Positives = 159/693 (22%), Gaps = 120/693 (17%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E+R         G +      I +   +           +        + +
Sbjct: 55  VTFTNKAAGEMRHRTDLQLRNGSRGMW---IGTFHGLAHRLLRLHWQDARLPEGFQVMDS 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R++                                       I+  + E ++
Sbjct: 112 DDQLRLVKRVVQSLELDESKYPPKQMSWW---------------------INEQKDEGRR 150

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +      +    W             + ER             +       +     
Sbjct: 151 PQHIQ----PEPNDDWTEVRRQ---VYAAYQERCDRSGLLDFAELLLRAHELLRDTPALL 203

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A       V    D       W     ++  
Sbjct: 204 AHYRARFREILVDEFQDTNAIQYAFVRVLAGETG--HVFVVGDDDQAIYGWRGAKVENVQ 261

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G  +  +       +      +     
Sbjct: 262 RFLKDFP--------------------------GAQTVRLEQNYRSSANILGAANAVIAH 295

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA  +    R  + +     + A++      
Sbjct: 296 NPDRIGKQLWTDSGDGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAQ 355

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L    +   +  G+            + L  +   +D  A    V  P     
Sbjct: 356 SRALEEALISEQLPYRVYGGMRFFERAEIKDALAYLRLLSNRSDDAAFERAVNTP----- 410

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        +    LD +        +  W++ +    + 
Sbjct: 411 --------------------------TRGIGDRTLDEVRRLARANALSLWEAAMLCTQEN 444

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                  + L     LV     +          D   +     ++   +    L +    
Sbjct: 445 TLAARARNALATFLSLVGQLHAETGDMELAERIDHVLMRSGLREHWAKESRSGLDSESRT 504

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E    L S+ S+             E +  +                  + ++    ++ 
Sbjct: 505 ENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMTLHSAKG 564

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + L GL +G++P   +              L+ + +   +    +      R  L
Sbjct: 565 LEFPIVFLVGLEDGLFPSARS--------------LEESGRLEEERRLAYVGITRARQKL 610

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVLGGTD 726
           +   +        +   + SR+L+ +      +
Sbjct: 611 VLCYAESRRIHGQDNYNVPSRFLREIPRELLHE 643


>gi|108797876|ref|YP_638073.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Mycobacterium
           sp. MCS]
 gi|119866970|ref|YP_936922.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Mycobacterium
           sp. KMS]
 gi|108768295|gb|ABG07017.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Mycobacterium
           sp. MCS]
 gi|119693059|gb|ABL90132.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Mycobacterium
           sp. KMS]
          Length = 1082

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 94/886 (10%), Positives = 203/886 (22%), Gaps = 65/886 (7%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST-- 73
           PF                           A   + VP K   + L      + G+ S   
Sbjct: 2   PFHLHRAERTDLLADGLGALLSTPLADPFAEELVLVPAKGVERWLSQRLSHVLGRGSGDD 61

Query: 74  ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELAR--LILIWRNKLPDIIKDLY 131
            +    +  +              +   P S +  LLE+    L   W   L   +    
Sbjct: 62  GVCAGITFRNPRSLIADITGTRDDDPWAPDSLVWPLLEVIDDNLDQPWCTTLATHLGHFE 121

Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                 L  S   A+  A+ LA +      +         L  +          D L   
Sbjct: 122 HGQEQELRQSRRYAV--ARRLAGLFASYARQR------PGLLVDWLAGNPADLDDDLHWQ 173

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              W   +  + A  P       +    E      +  + + G T        L+  +A 
Sbjct: 174 PHLWRHLVERVPADPPHIRHAKTVARLHESPSNLPE-RMSLFGHTRLPSTEVELLDALAT 232

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           H +  + LP     + T +            +++         +L + L  L       +
Sbjct: 233 HHDLHLWLPHPSDDLWTTLEPHRGAVRRREDNTHREVGHPLLATLGRDLREL------QR 286

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
            L + S              L          + +      +      V +        + 
Sbjct: 287 SLPDDSQTDEYLGTADHPDTLLGWLQSDIAANAVRPDGRRLHDHDRSVQVHSCHGAARQI 346

Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARR----------VKLELTRFGINIDISA 417
             +   L   L ++     +   ++  D                V              A
Sbjct: 347 DVLREVLLGLLVDDPTLEPRDILVMCPDIEHYAALIVAGFGLGDVIHGAHPAHRLRVKLA 406

Query: 418 GIPLSTT-LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP----------EKYLSR 466
              L+ T     +   LL           +  L + P  +  F           +     
Sbjct: 407 DRALTQTNPLLGVAGQLLALAGGRATATEVLNLAEAPSIRARFTFSDDDLDAIGDWVREA 466

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                     R       + +     LDR+      +   H     +    ++    V+ 
Sbjct: 467 NIRWGFDREHRHPYGVDFVQNTWRFGLDRVLAGVAMSDDSHAWLDTTLPLDDVGSDRVEL 526

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
             +    +   +    +  G   + +W +   T +  +         + W   + +   +
Sbjct: 527 AGRLAEYVDRLQHCVENLSGTKPLHEWLEALRTGIDQLTAVPDD---DTWQTSQLEREFA 583

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
                  +         +   ++ R + G   +    ++ TL +   +  R +    + L
Sbjct: 584 DVLTQAGSRKDTLLRLPDVKALLDRHLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCL 642

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLR 704
            GL++                  +   +        +       A G     L+ T +  
Sbjct: 643 VGLDD---GAFPRLGVVDGDDALARDPMTGERDIRSEDRQLLLDAIGAATERLVVTYTGA 699

Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
                      +  + +L   D       R Q  ++   +              P  P  
Sbjct: 700 NEYSGQRKPPAVPLVELLDALDVTTEAPVRKQILVEHPLQPFDVRNVTPGALGVPGTPFT 759

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-------PDRTDRGTLFHNIIT 817
                 + + +               L          D                    + 
Sbjct: 760 FDSTALTAATVASGDRAERPGLLTHPLPAPPEDDVALDDLIGFFKDPVKGFFRALDFTLP 819

Query: 818 ELIKKRINKNTPEINHLM-----KQIIDSHFEKENLPPHIDIIWRH 858
             +    +    EI+ L      ++++D      N        WR 
Sbjct: 820 WDVDAVQDAMPVEIDALAEWQVGERMLDDMLRGLNPEQAQQAEWRR 865


>gi|127513057|ref|YP_001094254.1| exodeoxyribonuclease V, gamma subunit [Shewanella loihica PV-4]
 gi|126638352|gb|ABO23995.1| exodeoxyribonuclease V, gamma subunit [Shewanella loihica PV-4]
          Length = 1192

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 77/750 (10%), Positives = 176/750 (23%), Gaps = 62/750 (8%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L   L    +        L++  I V +      LR    +     + +      L    
Sbjct: 13  LAELLANELQTPLPGQSPLSNEQILVQSPGMSTWLRLAIAKQNQVAAALE---FPLPSSF 69

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL----PDIIKDLYPESPLSLPIS 141
             +    LL         +      +L  L+    ++                  S    
Sbjct: 70  IWQLCHQLLPDVPKENAFTKPAMTWKLMELLPGLLSQEVFAPLANYLKDDAILTDSAAPH 129

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW------LLAADFLKIASKYW 195
                 L   +ADI D        W        ++                 L     ++
Sbjct: 130 SLKLFQLCSQIADIFDQYLVYRPDWILAWEQGEDRLPPKERPLDANQQWQSLLWRELIHY 189

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--IIIAGSTGSIPATARLMSTVANHP 253
               +  +         AL  A ++ L   +K P  + + G +   P T  ++  +A   
Sbjct: 190 NHHTLNQSRYHRANLHQALFDALSDPLCDLSKLPPRLFVFGISSMAPQTLEVLYFLAKRI 249

Query: 254 NGAIVLPGLDCHIPTA----------IWNTITEKSTNITSSNTTYSTHPQ--------YS 295
           +  ++      H                    ++   I   +     +P           
Sbjct: 250 DVVMLNLSPCQHYWGDIVDPKLRARMALQYGDKQQLAIDWESKLEVGNPLLANNGKMGRE 309

Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
           L  L+  L     +                 + +  L   T         E  +    + 
Sbjct: 310 LLDLILELPENDTNFNFECYQDPGSNSLLHGVQQDILELCTRGETLGPDAELYLTTKGRR 369

Query: 356 -----FSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL 406
                   + L    +   E  ++   L   L ++     K   ++  D          +
Sbjct: 370 VLKIDDDSLTLRSCHSPLRELETLHDHLLEQLSQSDGLAPKDIVVMMPDVAAYAPYIDAV 429

Query: 407 -----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF-- 459
                    I   I+       +   +    LL           I  +++ P     F  
Sbjct: 430 FASKRGDHFIPYAIADRGAAQESPLINSFLHLLGLNKSRFALTDILGILEVPAVMRRFDL 489

Query: 460 --------PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
                                    R  +              +      +         
Sbjct: 490 DDDDLLLIRRWLEQAGVRWGRDQHSRQAQQLPAFEHNSWAFGIKRLILGYSFSDEAPIYH 549

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            S     +       + + +  +        +   +  +S       T ++        +
Sbjct: 550 DSLALPGVEGQSAQALGKLLNFIEAIDEFNLALGEHCPLSVRITQLQTLVETFYDCVDEE 609

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
           L     +E  + ++ L  ++  T    +       +  TR +    V  +     ++   
Sbjct: 610 LSQ--KQELLQAITRLSEELTATQYQSELELEVMQNWFTRHLTESRVGQRYLAG-SVNFC 666

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
             +  R + F  + L G+N+GV+P+      F     +       + +   +      + 
Sbjct: 667 TLMPMRSIPFMLVCLLGMNDGVYPRVQHPVGFDLVAQEGPRKGDRSRRLDDRYLFLEALL 726

Query: 692 NGTRHLIYTR--SLRENNIPTIASRWLQRL 719
           +    L  +       +N   I S  +  L
Sbjct: 727 SAREQLYISYIGHSERDNSERIPSMLVSEL 756


>gi|219848809|ref|YP_002463242.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
 gi|219543068|gb|ACL24806.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
          Length = 742

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 73/700 (10%), Positives = 181/700 (25%), Gaps = 112/700 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R   + + G+       + +   +       D++           
Sbjct: 56  QILAVTFTNKAAREMRERLMALLGEAIAHDLTVGTFHSICARWLRRDIVHL--------G 107

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            +R   +          L  ++++L       LP +  +AI  AK           E   
Sbjct: 108 RERDFVIYDTDDQ-ERLLKRVLRELNLNEKQHLPRAILSAISHAK----------NELVD 156

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E+        +          +      +   L E NA          +R  + +    
Sbjct: 157 PEEFARHARTYFDE-------IVARCYARYQALLYESNALDFDDLLGETVRLFSNYPAVL 209

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    +++     +  A   L+  +A       V+   D       W     ++  
Sbjct: 210 AEYHQRYRFLLVDEYQDTNRAQYLLVRALAERDRNLFVV--GDEAQSIYAWRGADIRNIL 267

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +   +T         +  L+      + + + +  +   S     +          
Sbjct: 268 QFEHDYPDAT---------VIMLEQNYRSTQAILDAAQALINASPQRKYAKR-------- 310

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAI-SIAIALRMSLDENKKK--SALITADRN 397
                   +         V L EA N+ +EA  +++  +R+  +   +    A++     
Sbjct: 311 --------LWTTNGTGDQVVLYEAANDEDEAAFAVSEIMRLIAEGTARPGDCAIMYRMNA 362

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R V+  L +  +   +  G+          + + L  +    D +++  ++  P    
Sbjct: 363 QSRLVEEALIQSHLPYQVIGGVRFYERKEVKDVLAYLRLVANPYDSVSLQRVINWPGRGI 422

Query: 458 GFPEK-YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
           G      L      L +   +      D                +   +       S   
Sbjct: 423 GERTVNELLVWATRLGVPLYQALSELADETTEYPFAARARNALLDFYRLI--GEFHSLRQ 480

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
           +     L+D++L  I    T      +        +  +L    +    L          
Sbjct: 481 RMPLGELIDYLLMRIEAQATLYQEYEAEEAEDRWRNVQELRNAAINYANLPIEH------ 534

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                                      +    +  +            +  +  +   ++
Sbjct: 535 ---------------------------QLAAFLEDIALVADTDTLDRNNDVVTCITLHQA 567

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-R 695
           + L F  + + G+ EG+ P + + N                 +   +    +       R
Sbjct: 568 KGLEFPYVFVLGVEEGLLPHSRSTN--------------DRNQLEEERRLLYVGMTRAQR 613

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            L  + + +      +      R L          L++RG
Sbjct: 614 RLYLSYAAQRAMFGRVTVCSRSRFLADIPPTSLKLLRRRG 653


>gi|126649601|ref|ZP_01721842.1| PcrA [Bacillus sp. B14905]
 gi|126593926|gb|EAZ87849.1| PcrA [Bacillus sp. B14905]
          Length = 750

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 77/690 (11%), Positives = 182/690 (26%), Gaps = 115/690 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + V     T +A +E+R     I G  +     + +   +       ++           
Sbjct: 57  SKVLAITFTNKAAREMRERIDGILGNGTGDSMWVSTFHSMCVRILRRNIDQL-------- 108

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            I R   +        + + +++KD   +     P +  NAI  AK           E  
Sbjct: 109 GISRNFSILDSTDQL-SVIKNVMKDENIDPKRFEPRAILNAISAAK----------NECI 157

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
             +D  + +      +    A       K + +RL    +       +  +         
Sbjct: 158 TADDYAS-QMNDKNPYEQTVAR----VYKGYEKRLRRNQSLDFDDLIMTTITLFKRVPEV 212

Query: 225 GTK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I +     +  +   L+  +A       V+   D       W      + 
Sbjct: 213 LEYYQNKFQYIHVDEYQDTNKSQYLLVQLLAEKFKNICVV--GDSDQSIYRWRGADIGNI 270

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      +P   +  L       +  ++   +V      R                
Sbjct: 271 LSFEK-----DYPNAKVIMLEQNYRSTKRILQAANDVIQNNTTRYPK------------- 312

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADR 396
                   ++         +AL +A NE+EEA  +   ++  +++  +     A++    
Sbjct: 313 --------ELRTENAEGEKIALYKAYNEQEEAQFVVQTIQQLMEKENRTFDDFAILYRTN 364

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  L +  +   I  G           L + L  I   +D +++A ++  P   
Sbjct: 365 AQSRVMEEVLVKSNMVYQIVGGTKFYDRKEIKDLLAYLRLIANNDDDLSLARIINEPKRS 424

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G             +  ++    N    M L     +  A Q           +     
Sbjct: 425 IGATSFEKMARYAIEQDRSIFDAMNDLIFMGLSGKAAN-SAEQFYAMIKGFTGMQEYLSV 483

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            EL   ++D          T   N+ +      + +  +                     
Sbjct: 484 TELVEQVIDKSGY-----RTMLQNEKTIEAESRLENIEEFLS------------VTKAFE 526

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
              + K+L +  + +         +                   +      + ++    +
Sbjct: 527 ERSDDKSLIAFLTDLALIADIDALD------------------KEDASKGNIILMTMHAA 568

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + + G+ E ++P + +              L   ++   +    +        
Sbjct: 569 KGLEFPIVFIIGMEENIFPHSRS--------------LDDQDEMEEERRLMYVGVTRAEE 614

Query: 697 -LIYTRSLRE----NNIPTIASRWLQRLLV 721
            L  T +        +    ASR+L  +  
Sbjct: 615 RLYLTCAQSRTIFGRSSFNNASRFLGEISE 644


>gi|268607993|ref|ZP_06141724.1| recombination helicase AddA [Ruminococcus flavefaciens FD-1]
          Length = 1213

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 86/833 (10%), Positives = 208/833 (24%), Gaps = 126/833 (15%)

Query: 215  MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN---------GAIVLPGLDCH 265
            +++EA          I+I     S      +   ++ +           G  V    D  
Sbjct: 379  IQSEAALKTSEYYDIIMIDEYQDSNNKQDLIFKLLSKNYRTDENGQPLYGDNVFLVGDVK 438

Query: 266  IPTAIWNTITEKSTNIT----SSNTTYSTHPQYS---LAKLLDFLDIKREDVKRLGNVSN 318
                 +     ++   T       +  S  P  S           ++          V +
Sbjct: 439  QSIYRFRLANPRNFIGTLKSAEPYSVESDAPIKSILLNRNFRSSENVIDFVNYVFSEVMS 498

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            E  G         L       R     +++              E  N  +EA+  A  +
Sbjct: 499  EKCGDIDYSDDEKLYFGAEYYRGISDEKSRTVINFINDDADEEEEDGNINKEAVFTAQTI 558

Query: 379  RMSLDE--------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
               L +                    ++  +     +   +L+  G+    S       +
Sbjct: 559  AEMLHKGTEVVGNDGSTRPCRPSDFCILVRNNVHINKYAEQLSLLGVPAKGSEESGYLRS 618

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
               ++L  LL  +      + +A ++  P+  F   E        +LE      +     
Sbjct: 619  REIAVLIDLLRVVSNPLLDIPMAAVMTSPMYMFSIRE---LAYIRSLEKGRPLYSVLRGL 675

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                     D    ++    +    S   +        L+  I      +   +   +  
Sbjct: 676  ADGEYEECFDMFLRERCRDFLDSLDSFRMDSVTMTIGELISSIYDTTDFISVMQLYSDGE 735

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                ++    +   +  ++   +    L         + L  +          + A++ +
Sbjct: 736  KKRANLRALIQYAQSYEESAAFEGSGGLGGF-----LRHLDKVMENGDYAQGKVAASSGD 790

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG--GLNEGVWPKNTAKNP 662
            ++ ++         + K  +   +FI  T      + D ++    G    +         
Sbjct: 791  YVSVL------TLHRSKGLEFPFVFIAETSTKFQYDSDIVMCSSDGRAGYILYDPKIYRK 844

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT----------RSLRENNIPTIA 712
            + +       + +  +    +    +      +  ++           R   +     I 
Sbjct: 845  YRTFQQSILASEEERDTRSEEMRLLYVGLTRAKQKLFVDLKCGEKAMKRVRSKLESCIIN 904

Query: 713  SRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKL--DYTTKQPHYKRPKPFPPLEAQPR 768
               +  ++       D+          +     KL      +     R +          
Sbjct: 905  DGDISEIVAEADYFSDWIWAALMHHSDFSAIAEKLGLTEAGESVPDVRCEEKLFDCVFAE 964

Query: 769  TYSF-------------------SEIKQLINDPYAVYAR--------------------- 788
              S                    +E+++L++D Y                          
Sbjct: 965  NISPVYIDRDEAAEKTTADEAVYTELEELVSDSYDRTLSETPAKLSVTEITKKLKQESDN 1024

Query: 789  --RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
                LK             ++RGT  H           +    +++  ++ +    F   
Sbjct: 1025 FDYKLKRPRFITGSGKLTGSERGTAIHTFFQYC---DFDNAQADVSAEIEAVAKRGFITS 1081

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKIFVNIPAKMAIESIGI--------- 896
                 I         K S  F     K  +++ +K++      +A+  + I         
Sbjct: 1082 AQADVISP------EKASAFFASGLYKRIRAAGDKVWREKKFMVAVADLDIGSDALDQLK 1135

Query: 897  ----HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
                 + G  D +     G + I DYK+      +   +    QL+L  AA +
Sbjct: 1136 KSDGMIKGIMDLVFEEDDG-LIIVDYKSDRGASAKALSERYSMQLTLYKAAAE 1187


>gi|154487471|ref|ZP_02028878.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis
           L2-32]
 gi|154083989|gb|EDN83034.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis
           L2-32]
          Length = 896

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 75/716 (10%), Positives = 177/716 (24%), Gaps = 94/716 (13%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVV 85
             L     +   +    +S+     T +A  E+R   + + G ++       I +     
Sbjct: 59  RVLTRRIAWLLAHGFWASSILAITFTNKAAAEMRERLVTLVGPEAEHMW---ISTFHSAC 115

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                 D            +I    +  RL+ +    L    K   P   L       NA
Sbjct: 116 VRILRRDGKEIG--LKSGFSIYDTADSERLVKLIAADLNIDTKRYTPRMLLGKISDCKNA 173

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD---FLKIASKYWTERLVEL 202
                 L    D ++     +             + + A D    + +    +  RL   
Sbjct: 174 ------LVSWKDQLKKANCDY-------IPGQRGYQVSAGDVDELVAVVYAEYQHRLALA 220

Query: 203 NASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
           NA       +  +             +     I +     +  A   L+  ++       
Sbjct: 221 NAVDFDDLIMRTVELLQTCPQVSEYYRHRFRYIFVDEYQDTNHAQYVLVRELSGID---- 276

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
                    P            +  +     S    Y+        +I+  +       +
Sbjct: 277 -----SDEQPDPQARGAGRVGPSWITV-VGDSDQSIYAFRGADIR-NIQDFEQDFPNAKT 329

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
             +              +    +N +    K+         +    ADN ++EA  IA  
Sbjct: 330 IMLEQNYRSTQTILDAANAVIAKNENRKPKKLWTALGQGDKIVGYAADNAQQEAGWIANE 389

Query: 378 LRMSL---DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
           +       D   +  A++      +R ++  +    +   +  G             + L
Sbjct: 390 IARIHTEEDVAYRDIAIMYRANAQSRSLEEAMINANLPYQLVGGTKFYERREVKDAIAYL 449

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            AI    D + +  ++  P    G   + L         +    +    D ++       
Sbjct: 450 QAIVNPADNVNVRRILNVPKRGLGARAEGLVAGYADAHGLTFFESIEHMDQIE------- 502

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                              +   ELA    +H  +    +                S   
Sbjct: 503 -----GMTGRTTKPLGAFRDLMHELADFAKEHDSKPSEVVAEVLDK----------SGLL 547

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           +                L  L         ++             A    +++    + D
Sbjct: 548 EELQRSEDPQDASRVDNLSQLQSVAAEFEQNTP-----------DATLAGFLETTALVAD 596

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
            + +  + E S  + ++    ++ L +  + L G+ +G +P   A              +
Sbjct: 597 SDQLPGEGEDSGKVTMMTLHTAKGLEYPYVFLTGMEQGTFPHQRA--------------M 642

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGT 725
           +   +   +    +      +  +Y      R+        + S++L  +      
Sbjct: 643 EDTSELSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANDMMPSQFLDEIPDELID 698


>gi|260760725|ref|ZP_05873068.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671157|gb|EEX57978.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 450

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/403 (12%), Positives = 95/403 (23%), Gaps = 30/403 (7%)

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGK-TLSSLFSKIIETGSCIKANAIEWID-IITRL 612
           +     L             L   E     +     +  +    +  +A + ++  +  L
Sbjct: 11  EFQNYALSAERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTMHAAKGLEGAVVFL 70

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           +D  +      ++  L               L     +              +R  +   
Sbjct: 71  VDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYR 130

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
            L        +         GTR    T      +     S      +       +    
Sbjct: 131 RLLYVGMTRAEDRLIICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTP 190

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
           +      +  +    +     +   +P       PR  + S    LI           L 
Sbjct: 191 RSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LS 248

Query: 793 LDFIPHFKKDPD-RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
              +      P     RGT  H ++  L      K        + +I             
Sbjct: 249 SPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------- 298

Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADR 904
                     ++      H          +F         +   + I      ++G  DR
Sbjct: 299 -----WPDAERLKAWQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDR 353

Query: 905 IDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALK 945
           I + +S  V I DYKT   P K  E        QL+L    L+
Sbjct: 354 ISVDES-RVLIVDYKTNRPPPKTLEAVPSAYRAQLALYRELLR 395


>gi|54294699|ref|YP_127114.1| hypothetical protein lpl1776 [Legionella pneumophila str. Lens]
 gi|53754531|emb|CAH16015.1| hypothetical protein lpl1776 [Legionella pneumophila str. Lens]
          Length = 1076

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 86/757 (11%), Positives = 204/757 (26%), Gaps = 136/757 (17%)

Query: 201  ELNASSPVGYQIALMRAEAEHL--------MKGTKGPIIIAGSTGSIPATARLMSTVAN- 251
            E N           + A  +          +  +   +++     +      L+  +   
Sbjct: 372  EHNEVDFTAISQQALAALGDLDNPTDLALYLDHSIHHLLVDEFQDTSITQFELLIKLVQG 431

Query: 252  --HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 G  +    D       +             +          L  L   L      
Sbjct: 432  WVPGEGKTLFLVGDPMQSIYRFRQAEVGLFFQAKEHGIGPV----RLKSL--ELRCNFR- 484

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                 +    +   +   SK F      +        +     +   S +  ++  N  +
Sbjct: 485  -----STETIVNWVNDHFSKIFSQQVDIESGAVSFHPSVHVIEKNESSTIQAMQFKNREQ 539

Query: 370  EAISIAIALRMSLDENK-KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            EA  +   +   L+ N  +  A++   R+    +   L +  I    +    L+  +H  
Sbjct: 540  EARHLIEIINNELNSNPEQTIAVLVRTRSQLPEIISLLRQNNIPYQGTDIDLLANLVHLR 599

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
               SL +A+    + ++  +++  P    G  + +             R +     +   
Sbjct: 600  DAWSLAHALLFPGNRLSWLSVLHSPYVGLGLSDIHCIA------QYNSRKSIYHNLLH-- 651

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                                         +    + +         +           + 
Sbjct: 652  ----------------------------LDKIQDISEEGRIRANFFIQIMNQALLCRSHS 683

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             +SDW   T+  L    + +  +L +L   +    L     +          +  E+++ 
Sbjct: 684  RLSDWIADTLKNLHVEKILDKAQLNDLE--QLWMLLDQYEKE------GRIPDMNEFLNE 735

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL--SR 666
              +L   +T        S L I+   +S+ L FDT+IL GL    +   +    +L    
Sbjct: 736  FNKLYAQQTTP------SRLQIMTIHKSKGLEFDTVILPGLGAQAYRGESPMLRWLKLPT 789

Query: 667  VMQSDLNLKTAEKYIGQA---AHDF----------EMANGTRHLIYTRSLRENNIPTIAS 713
               S+L L +  K   Q     +D+            A    ++  TR+           
Sbjct: 790  QDHSNLLLVSPIKSANQDNCPLYDYLDQLDEEKSAYEAQRLLYVAVTRAKS--------- 840

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
                   +        + K   +  L +   +    +  H ++  P P            
Sbjct: 841  ------RLYLLDHSAKSYKSSFRNLLKYQEFIADPDEAQHEEQEFPLP------------ 882

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPD----RTDRGTLFHNIITELIKKRINKNTP 829
               +L+  P   Y ++I  L                   G + H ++  +          
Sbjct: 883  ---KLVKLPIEYYQKQIPSLVQSQESSCPEISSGIPRLIGIVSHQLLQWICDNHPQTINH 939

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS----FLEHEEKIQSSIEKIFVNI 885
               +L+   + +    +        + ++   ++  +    ++    + + +  ++ V  
Sbjct: 940  VPWNLVNNELKTLGLNQEDQQTALSMIKNQISQMYENKIGFWILSRHENEQNEYELLVEY 999

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
              K+        +T   DR  +       I D+KTG 
Sbjct: 1000 ENKL--------VTRIIDRTFIEND-TQWIIDFKTGK 1027


>gi|221194558|ref|ZP_03567615.1| ATP-dependent DNA helicase PcrA [Atopobium rimae ATCC 49626]
 gi|221185462|gb|EEE17852.1| ATP-dependent DNA helicase PcrA [Atopobium rimae ATCC 49626]
          Length = 843

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 75/723 (10%), Positives = 174/723 (24%), Gaps = 114/723 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     +    +  +  + +   +       D             
Sbjct: 68  QILAITFTNKAAAEMRERLGTLLPGGTRGM-WVCTFHAMCVRMLREDSEAVGFGP----- 121

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                        +     D  K L       L I       +A +L   I   +     
Sbjct: 122 ------------NFTIYDDDDSKRLVKAIMADLDIDVRQ-FPMA-SLRSKISAAKNALIT 167

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            +D+    +       +          +    RL    A       +      +++    
Sbjct: 168 PDDMEQAASSPADYVAVR-------VYRALQSRLKRAEAMDFDDLLVKAFELLSKNPAIL 220

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I +     +      + + +A+     +V+   D       W     K+  
Sbjct: 221 DAYQERFRYINVDEYQDTNGVQYAITNLLASKYKNLMVV--GDDDQSIYSWRGADIKNIL 278

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL          +     V      R                 
Sbjct: 279 AFE-----GDYPDAHVVKLEQNYRSTGHILGAANAVVAHNAHR----------------- 316

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNL 398
                E K+   +     + +  A +ER+E   I   +    D   +    A+       
Sbjct: 317 ----TEKKLFTNEGDGEKICVYRAADERDEGRWIGSEIEKLHDGGTSYDDIAVFYRTNAQ 372

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L R G+   I  G           + + L  I   +D +A   +V  P    G
Sbjct: 373 SRILEDMLLRAGVPYKIVGGTRFFDRAEIRDVMAYLKVILNPDDDVAALRVVNTPRRGIG 432

Query: 459 FP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                       +  LS        +A  G  ++     L        A +  +  +   
Sbjct: 433 STSISKIQKFALDNQLSFFAACEACIAEEGLLSAKVRNSLAEFTGTIEAGRTIDGELDEV 492

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKT----NKNSTCGNLSISDWTKLTVTCLQNV 564
              + +    +     +H ++    +   +            +  I++  +         
Sbjct: 493 IEAIVDRSGLIRAYEAEHTMEADGRIENIREFFSVAAEFDETHDDIAETLESLQQLRAAG 552

Query: 565 CLDEHRKLPNL-----------------WFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            LD                           E    T  +  +                  
Sbjct: 553 ALDGGDAQTADVAFYAADVSVTVSSPTGASETVFDTAGASGTVFDAAAYGAPDYPSVAAQ 612

Query: 608 IITRLIDGETVKPKIEKSST----LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
            +   ++   ++  ++  +     + ++    ++ L F  + + G+ E ++P   +    
Sbjct: 613 KLPAFMEWLALRSDLDSLAGSTSAVTLMTIHSAKGLEFPAVFVAGMEETIFPHIAS---- 668

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN----IPTIASRWLQRL 719
                  D      E+    A      A   + L  T +              SR++  +
Sbjct: 669 -------DTGSAHLEEERRLAYVAITRA--RKKLYLTYASTRRMYGSTQANPVSRFISEI 719

Query: 720 LVL 722
              
Sbjct: 720 PSE 722


>gi|167957364|ref|ZP_02544438.1| DNA-dependent ATPase I and helicase II [candidate division TM7
            single-cell isolate TM7c]
          Length = 288

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 85/277 (30%), Gaps = 30/277 (10%)

Query: 763  LEAQPRTYSFSEIKQLIN----DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
               +    S + +   ++     P       +L                 GT  H+ + +
Sbjct: 16   PNLETYKLSVTHLNNFLDVSRGGPQNFLLNNLLHFPA-----AKNSAAAYGTAIHSSLQQ 70

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
                    +       + Q      E ++LP     ++         +F+  +       
Sbjct: 71   THCLFNANHQLPSTEQILQFFQKSLESQHLPADDFQLYLDKGQSALTTFINTKASDFHDT 130

Query: 879  EKIFVNIPAKMAIESIGIHLTGFADRIDLLK-SGFVDITDYKTGDNPKKETAQKLIDP-- 935
            +   ++   +  I      LTG  D +D+ K +  + +TDYKTG            +   
Sbjct: 131  DLAELDFSNQGVI-IGETKLTGKLDVVDIDKQNKTIFVTDYKTGKPSHSWKGSADYEKIK 189

Query: 936  ------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
                  QL      ++              L ++  +   K   I + +  +S +EL+E 
Sbjct: 190  LHKYRQQLMFYQLLVEHSRDYGNFTFTGGRLQFV--EPDMKTGDILSLEDTFSREELAE- 246

Query: 990  SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026
                LIEI+   +         L L + S+  ++Y  
Sbjct: 247  -FTQLIEII--WRKITT-----LDLPDISDYSADYKG 275


>gi|154502322|ref|ZP_02039382.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149]
 gi|153796947|gb|EDN79367.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149]
          Length = 1194

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 99/846 (11%), Positives = 239/846 (28%), Gaps = 165/846 (19%)

Query: 214  LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-VLPGLDCHIPTAIWN 272
            L+ +      +     ++I     S      ++++V+    G+  V    D       + 
Sbjct: 379  LVPSAVAREYQEQFEEVMIDEYQDSNLIQEAILTSVSTVSRGSYNVFMVGDVKQSIYRFR 438

Query: 273  TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
                +            T+ Q    K    LD      K + + +N ++ + M  S   +
Sbjct: 439  LSRPELFMEKYD-----TYSQADSEKQRIDLDRNFRSRKEVLDATNYVFEQIMHKSVGGV 493

Query: 333  PPDTSDMRNTDILENKIPN---IQKCFSDVALIEADN-------EREEAISIAIALRMSL 382
              D            K      +    +++ L++A          R EA ++A  +++ L
Sbjct: 494  EYDARAALYPGADYPKSREQNGVSANRAELLLVDAQELEEEDNARRLEARAVADRIKLLL 553

Query: 383  DE--------------NKKKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHS 427
             +                K   ++T        V  + L   GI+  + +      T   
Sbjct: 554  LQGQVVDKKTKEYRPVQYKDIVILTRSIKGWADVFAQVLAEEGISAHVGSREGYFETYEV 613

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            S+L   L  +      + +A ++  P A                                
Sbjct: 614  SVLLDYLQILDNERQDLPLAAVLTSPFA-------------------------------G 642

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH-ILQCITPLVTYKTNKNSTCG 546
            L +  L +I +              + +D++    ++   +   +  +  ++     T  
Sbjct: 643  LDARELAKIRSTYPELFFYEAVHAYASDDEKEKEPILQQKLKNFLCRVSEFRDMLPYTAM 702

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
            +  + +  + T        +               + L +  +    T      N + +I
Sbjct: 703  HDLLWEIIEKTG-----YGMCISAMPGGAQRMANVQMLVAKAAAYEGTSYKGLFNFVRYI 757

Query: 607  DIITRLIDG-ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            + + +            E++ T+ I+   +S+ L F  +I+ G+ +    ++   +  + 
Sbjct: 758  EQLKKYNVDYGEANLADEQADTVRIMSIHKSKGLEFPIVIVAGMGKLFNTQDVKGSIVIH 817

Query: 666  R---------VMQSDLNLKTA-----------EKYIGQAAHDFEMANGTRH-LIYTRSLR 704
                       ++      T            E    +    +      +  LI T   +
Sbjct: 818  PELGVGMDVIDLKKRTKAPTLLKKVIQKQVAVENLGEEMRVLYVAMTRAKEKLILTGVCK 877

Query: 705  ENNIPTI-----------------ASRWLQRLLVLGGTDF------------FDNLKKRG 735
            +                       A+ +L  LL                      ++   
Sbjct: 878  DARTKLETLSTREKTAFLPYEVLSANSYLDWLLPAASPAESSIGITVVDSLGAAQMEGAW 937

Query: 736  QCYLDWTR---------KLDYTTKQPHYKR----PKPFPPLEAQPRTYSFSEI--KQLIN 780
            +   + TR         ++     +   KR      PF   +     ++ SE+  +  + 
Sbjct: 938  EAADELTRNVLENWDTNQIHDAGYREELKRQLDFAYPFAEEQRFQMKFTVSELKKRAYME 997

Query: 781  DPYAVYARRILKLDFIPH----FKKDPDRTDRGTLFHNIIT--ELIKKRINKNTPEINHL 834
            +       +  +   +       ++      RGT +H  +   +  K+   ++  E    
Sbjct: 998  EEAGEVLYQEPEAVPLVPRFLGAEEAASGAVRGTAYHKFLELLDFEKEYTRESLEEHLKH 1057

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ----SSIEKIFVNIPAKMA 890
            ++           + P I              FL+ E   +    +  ++++   P  + 
Sbjct: 1058 LQTEGR-------ISPEIA--EAVKTEDFLK-FLQCESGKRMHQAAKKKQLYKEQPFVLG 1107

Query: 891  IESIGI----------HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
            ++S  I           + G  D     + G + + DYKT      +   +    QL+  
Sbjct: 1108 VDSGEIYPDTECRAQLLVQGIIDVYFEEEDG-LVVLDYKTDRVRTADELVRRYQSQLTYY 1166

Query: 941  AAALKA 946
            A AL  
Sbjct: 1167 ARALSQ 1172


>gi|149922812|ref|ZP_01911236.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
 gi|149816355|gb|EDM75857.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
          Length = 1336

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/558 (8%), Positives = 114/558 (20%), Gaps = 61/558 (10%)

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             +         +        +    A + W   L           +       A+    
Sbjct: 330 DPKRTLEADQAGHAEHLSRWLELADFAQRDWVASLRRRGVLRYDDLERFAADLLADPRAQ 389

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA----IVLPGLDCHIPTAIWNTITE 276
              +G    +++       P  AR++  +      A     V    D       +     
Sbjct: 390 DQLRGRYRHLLVDEYQDVSPIQARILEALVELCGRADAPVRVFYVGDPKQSIYRFRGADP 449

Query: 277 --KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL----GNVSNEMYGRSMVISKS 330
                   + +   +        +    L     ++                       +
Sbjct: 450 EVFQRAERTVDDGQAVVRLAENRRSSPSLGRFFAELFPPLFAGALPWANTAEFGRPFELA 509

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVAL--IEADNEREEAISIAIALRMSLDE---- 384
            L       R     +            +A+  +       E    A  L    +     
Sbjct: 510 RLRDVEDHARVPWDQDVTTVRAADRLPGLAVDSLLRMRPSGELPEDADPLTRETERVAAH 569

Query: 385 ---------------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
                                  +  A++     LA R +  L   GI  D++ G  L  
Sbjct: 570 VYGLLCGATLGDDSSDDPPTIRARDVAILVPRWQLAERYREALDARGIRADLAGGRGLLA 629

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                 L +L+       D +A   +++ P         Y+      L+      + +  
Sbjct: 630 LPEVRDLINLVRCFADERDALAAVAVLRGPCFGLSDLGLYVLGRWPGLDRRVQEADPDLP 689

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL------VDHILQCITPLVTY 537
           +  +L  L       + +    P    R   +      L              + P    
Sbjct: 690 EFAELDELWERWDDDEDDGESWPRTPPRPYRQVLRHGRLFPERALAALAEAGVLEPERRA 749

Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLD--------------EHRKLPNLWFEEEGKT 583
                      S+           ++                                  
Sbjct: 750 ALQAQLERDAASLEGGRDRFWALARHAGARSTAELLADLITAFCLEAHWLASPRGRRAVA 809

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            +  F + + T      +    +  +               +  + I     S+   +  
Sbjct: 810 NAWRFVEHVRTLEPDGPDLQRLVSWLDAGAQPAPEGLISPHADAVTITTWHGSKGKEWPV 869

Query: 644 LILGGLNEGVWPKNTAKN 661
           +++ GL E       A  
Sbjct: 870 VVVAGLGEFRPSPTRASW 887



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 85/857 (9%), Positives = 173/857 (20%), Gaps = 47/857 (5%)

Query: 100  NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
             P  +        A     +       ++D           +   A  L     D +  +
Sbjct: 487  PPLFAGALPWANTAEFGRPFELARLRDVEDHARVPWDQDVTTVRAADRLPGLAVDSLLRM 546

Query: 160  ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
                +  ED   L  E   +   +               L + ++  P   +   +    
Sbjct: 547  RPSGELPEDADPLTRETERVAAHVYGLLCG-------ATLGDDSSDDPPTIRARDVAILV 599

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                   +    +      I A       +   P    ++  + C               
Sbjct: 600  PRWQLAERYREALD--ARGIRADLAGGRGLLALPEVRDLINLVRCFADERDALAAVAVLR 657

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                  +    +       L   +     D+     +                 P T   
Sbjct: 658  GPCFGLSDLGLYVLGRWPGLDRRVQEADPDLPEFAELDELWERWDDDEDDGESWPRTPPR 717

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
                +L +     ++  + +A          A   A   R +      +       R+  
Sbjct: 718  PYRQVLRHGRLFPERALAALAEAGVLEPERRAALQAQLERDAASLEGGRDRFWALARHAG 777

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
             R   EL    I         L++      + +    +  +                   
Sbjct: 778  ARSTAELLADLITAFCLEAHWLASPRGRRAVANAWRFVEHVRTLEP-------------- 823

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                L R  + L+  A    +           +     ++     V              
Sbjct: 824  DGPDLQRLVSWLDAGAQPAPEGLISPHADAVTITTWHGSKGKEWPVVVVAGLGEFRPSPT 883

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
                    +  +    T          +   S           N+               
Sbjct: 884  RASWSAEPVPTLGS-QTKLAVPRIRPPHQGFSARFDSLHPVCANLTTPLEAAEAKRLLYV 942

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                         E       +  +   +            +      L           
Sbjct: 943  AMTRARDRLVLSGEADPRTHVHVGDRAWLSLE---------RGTSMDPLVGEPKPAYLCR 993

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
                L++ GL+              + +         +   + + A        +     
Sbjct: 994  RPLELLVAGLDIPAPHAGLGAVGSDTLLRPRAAAWSLSFLRVIEDADLRAGLERSLPAPP 1053

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
                     P   +R   R   +                     K           R  P
Sbjct: 1054 PVPEPAVPPPPPKARKRGRKRKVDKRQLGLFASMGLDPEPPPPPKPRRGRVDVMRWRAGP 1113

Query: 760  FPPLEAQPRTYSFSEIKQLIND-PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                       S   + +L  D P       +L+ D  P      D  + G LFH  +  
Sbjct: 1114 SLASWRPSAGRSPWPVSELDWDMPLPARRPIVLEADPDPDPDTSEDPRELGELFHAAMER 1173

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL-FHKISHSFLEHEEKIQSS 877
                    + P    L + +      +          W       +  + L  E      
Sbjct: 1174 W---DFQGDPPNAAALGELVGVHFGARSPKRRTQLARWLERTLALLLDTPLHAELCAARE 1230

Query: 878  IEKIFVNIPAKMAIESIGI-----HLTGFADRIDLLKSGFVDITDYK-TGDNPKKETAQK 931
              ++F  +     I S         + G  D +     G   + DYK T     +   ++
Sbjct: 1231 RGELFHELDVDALIPSFDAERADNRVRGRIDLLWRDDEGAWCLLDYKVTSKVRSRAEMEE 1290

Query: 932  L---IDPQLSLEAAALK 945
            L     PQL L   AL+
Sbjct: 1291 LQWEYGPQLLLYRRALQ 1307


>gi|187250723|ref|YP_001875205.1| RecB family exonuclease [Elusimicrobium minutum Pei191]
 gi|186970883|gb|ACC97868.1| RecB family exonuclease [Elusimicrobium minutum Pei191]
          Length = 244

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 23/190 (12%)

Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
              E +    ++S+IK     P     + +               +  G   H  + E  
Sbjct: 1   MEFEHKVYELNYSKIKTYKECPLLYKYKYVEGKRE-----GLVPASSLGVSIHRTLEEYH 55

Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
           K   + +  EI +                    + +     K+  ++ E E + ++S++ 
Sbjct: 56  K--YSNDPSEILNYFNNCW---LGAGYTSAGEQMEYYLKGKKMLEAYAEKEYERKTSVDS 110

Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID----PQ 936
                  +  I      + G  DR DL   G  ++ DYKTG         +  D     Q
Sbjct: 111 TEREFIFEHGI----WTIRGKIDRTDLWPDGSWEVIDYKTGS-----ELDENFDVTQSLQ 161

Query: 937 LSLEAAALKA 946
           + + +   + 
Sbjct: 162 MGIYSVGARR 171


>gi|220933272|ref|YP_002512171.1| DNA helicase II [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994582|gb|ACL71184.1| DNA helicase II [Thioalkalivibrio sp. HL-EbGR7]
          Length = 721

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 66/709 (9%), Positives = 158/709 (22%), Gaps = 118/709 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+     T +A  E+R     + G     +  + +   +      A    +  L      
Sbjct: 56  SILAVTFTNKAAAEMRGRIEALLGMPVRGM-WVGTFHGLAHRLLRAHWQDA-GLPQGFQI 113

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +    +L  +  + +    D  +             P  A W        I+  + E  +
Sbjct: 114 LDSDDQLRMVKRVLKALELDEARW-----------PPRQAQWF-------INARKDEGVR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +    +             L      +                +  +    +     
Sbjct: 156 PQHMEDHGDPVNRQ--------LVRIYSAYEAACKRAGVVDFAELLLRALELLRDTPALL 207

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A       V    D       W     +   
Sbjct: 208 EHYRARFRHILVDEFQDTNAIQYGWLRLLAGSR--IPVFAVGDDDQSIYGWRGARIEHIQ 265

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
             S +                            G  +  +              +     
Sbjct: 266 HFSRDFP--------------------------GTRTVRLEQNYRSTGNILRAANALIEH 299

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N   L   +       + +AL  A NE++EA  +A  +     E  +  + A++      
Sbjct: 300 NDGRLGKNLWTEDSEGAPIALYAAFNEQDEARFVAGRIEEWQREGHRHSEVAILYRSNAQ 359

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R  +  L +  I   +  G+            + L  +    D  A   +V  P     
Sbjct: 360 SRVFEEALIQARIPYRVYGGLRFFERAEIKDALAYLRLVASREDDAAFERVVNQP----- 414

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                         + L    +A  ++           +     
Sbjct: 415 -----------------------------ARGLGERTLAQIRDLARERDQSLWSASAHLL 445

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
               L       +   +         C +L + +  +  +           R        
Sbjct: 446 ETGGLTARAGNALRGFLALVDGLAEACRDLPLHEQAEHVIQH------SGLRDFYAAEKG 499

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIE------WIDIITRLIDGETVKPKIEKSSTLFILG 632
           E+ +       +++        +             +                  + ++ 
Sbjct: 500 EKAQARVENLDELVSAARGFSFDPETHGDMDTLTAFLAHAALESGEGEASAFEDCVQLMT 559

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L F  + + G+ EG++P   +         +  L      +   Q    +    
Sbjct: 560 LHSAKGLEFPLVFMAGMEEGLFPHRMSVEEPGRMEEERRLAYVGITRARRQLVLCYAE-- 617

Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                  +R L         SR+L  L      D     +     +   
Sbjct: 618 -------SRRLHGRETYNAPSRFLAELPAELIEDIRPRARISQPVFRRP 659


>gi|229090184|ref|ZP_04221432.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-42]
 gi|228693120|gb|EEL46833.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-42]
          Length = 1166

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 97/899 (10%), Positives = 213/899 (23%), Gaps = 142/899 (15%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 263  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEGGEMKPSAV 322

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 323  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 279  TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 383  FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 443  GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 503  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            K       + S +    
Sbjct: 563  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----------HGKKGSFYEVMSSFLKGAP 612

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCI------TPLVTYKTNKNSTCGN 547
              ++   H          +          L D I +          +      K      
Sbjct: 613  LEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANL 672

Query: 548  LSISDWTKL--------TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              + D  +             L+ +     R          G+    +    I     ++
Sbjct: 673  RVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLE 732

Query: 600  ANAIEWIDI--------------------ITRLIDGETVKPKIEKSSTLFILGTLESRL- 638
               +    +                              + K    S L I   ++  L 
Sbjct: 733  FPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELI 792

Query: 639  ---LNFDTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
               +    + L    E +    T K+       +L     S+  L    +       D+ 
Sbjct: 793  AEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGASCYLDWI 852

Query: 690  M--ANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                   R       L + +IP         W   ++        + +++  Q  L+  R
Sbjct: 853  APSLYRHRDSEMLLELGQGSIPGEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALR 912

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------NDPYAVYARR 789
            +      Q   K       +       + S   +                ++ +    R 
Sbjct: 913  EKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIKKLRA 972

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             ++       KK     +RGT  H ++  +     +   P    ++++ I     KE L 
Sbjct: 973  PIQTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKELL- 1026

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SIGIH 897
               +        K+   F     K   + + +   +P  M +                I 
Sbjct: 1027 -TFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1085

Query: 898  LTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
            + G  D +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1086 VQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKS 1143


>gi|148654248|ref|YP_001274453.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
 gi|148566358|gb|ABQ88503.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
          Length = 1177

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 103/916 (11%), Positives = 218/916 (23%), Gaps = 86/916 (9%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP---IIKSLGDV 84
             ++V  +       +  AS+     + RA +E+R   I    + +  L     I +    
Sbjct: 225  RSIVAKYVSLVHQGVDPASILALTFSNRAAEEMRERIIAALRQAAPRLAGRVEISTFHSW 284

Query: 85   VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL-------- 136
                          L   V    RLL+ A L L+   +L D+    + +           
Sbjct: 285  GLNILRIYGAR-LGLPADV----RLLDTADLFLLLSKRLDDLRLAYFKDLREPTRHLVTI 339

Query: 137  --------SLPISPANAIWLA-KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
                        SP      A +    +I   E +            E+       A   
Sbjct: 340  IQAISRIKDELWSPEEFARAAEQEAERLIGQAEQDHPGASRKATEARERAVRR-ATALRE 398

Query: 188  LKIASKYWTERLVELNASSPVGY----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243
            L      +   L E  A            AL        ++     +++        A+ 
Sbjct: 399  LAQIYPRYEAILREAGALDYGDLIVLPVRALHDPAIAADLRRRYHYLLVDEFQDINYASG 458

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             L+  +        V    D       +   +  + +    +   +          + +L
Sbjct: 459  ELIRLLDGGRGR--VWAVGDAWQSIYRFRGASAANLDEFLHHYPTAQ---------VRYL 507

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                  ++ + + S                   SD R       +        + + L+ 
Sbjct: 508  TRNYRSLQPILDASAA--------------VMVSDPRAATRPLLQAQRTGGGHAVIELV- 552

Query: 364  ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
            A + ++E  +IA  +       + +     A +      +                    
Sbjct: 553  APHSQDEHTAIAHDILRRARSGRGRGLPRCAVQPWMLHCRKMRRALRRPPLFIRRWRFHD 612

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                 +  +   A        A    V HP   F   E     A  A             
Sbjct: 613  HAV--LCRTHEQASAIAAVLEAHGIPVDHPGNVFEASEVKDVLAICAQIGSTNSAGLLRA 670

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
              M    L  + +    +           +  D  +   L +   Q +T L T       
Sbjct: 671  LTMPDHRLDPNDLNLLVSLARQTQQALPRAARDPAVLAQLSETARQTLTRLQTIVETLER 730

Query: 544  TCGNLS-----ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                       + + ++     L      E+     L    +   ++  F ++       
Sbjct: 731  EADVWHALTTYLFEQSQAMRQRLNRAARGEYAAQRELATLGQLIAIARNFVRLATPEESG 790

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
              + I +I  +              ++  + ++    ++ L F  + + GL EG      
Sbjct: 791  APHFIAYIRALRAAGVQ-PRPLIGGQADAVRVMTVHAAKGLEFPIVYVPGLQEG-RFPAR 848

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
                 LS            E    +      M      L+ +R+L   N           
Sbjct: 849  GNQRGLSLPAGLIRGSIEPEDQEERYLLYVAMTRARDRLVLSRALTRGNGE--------- 899

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                            G       R +      P+           A       S I  L
Sbjct: 900  --RAAERSSLLPGDGDGNGAPWIVRSVIGGATCPNPAPAMRLHDTPAPRMPLPASSI-DL 956

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
                     + + +L                      +  L ++      P  +  ++ +
Sbjct: 957  DGCKRRFLYQYVYQLY-----DDLSPFLRMHQAIRECVRTLTEQARAGVLPADDDAVRSL 1011

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
            +    ++  L   +          + H  +   +     I    V+    +   +  I +
Sbjct: 1012 VFGQLQRYELDTVLYAEDYAT-ETLQHVQVVWNDLRSGRIAPERVDRRVLVRRPAGVIEV 1070

Query: 899  TGFADRIDLLKSGFVD 914
                DR +  + G   
Sbjct: 1071 --RIDR-EETQDGVTR 1083


>gi|169825828|ref|YP_001695986.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41]
 gi|168990316|gb|ACA37856.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41]
          Length = 749

 Score = 85.4 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 177/690 (25%), Gaps = 115/690 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + V     T +A +E+R     I G  +     + +   +       ++     ++   S
Sbjct: 57  SKVLAITFTNKAAREMRERIDGILGNGTGDSMWVSTFHSMCVRILRRNI-DQLGISRNFS 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            +    +L+ +I           K   P + L+   +  N    A + A  ++       
Sbjct: 116 ILDSTDQLS-VIKNVMKDENIDPKRFEPRAILNAISAAKNECITADDYAGHMN------- 167

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
                          +    A       K + +RL    +       +  +         
Sbjct: 168 -----------DKNPYEQTVAR----VYKGYEKRLRRNQSLDFDDLIMTTITLFKRVPEV 212

Query: 225 GTK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I +     +  +   L+  +A       V+   D       W      + 
Sbjct: 213 LEYYQNKFQYIHVDEYQDTNKSQYLLVQLLAKKFKNICVV--GDSDQSIYRWRGADIGNI 270

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      +P   +  L       +  ++   +V      R                
Sbjct: 271 LSFEK-----DYPNAKVIMLEQNYRSTKRILQAANDVIQNNTTRYPK------------- 312

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADR 396
                   ++         +AL +A NE+EEA  +   ++  +++  +     A++    
Sbjct: 313 --------ELRTENAEGEKIALYKAYNEQEEAQFVVQTIQQLMEKENRTFDDFAILYRTN 364

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  L +  +   I  G           L + L  I   +D +++A ++  P   
Sbjct: 365 AQSRVMEEVLVKSNMVYQIVGGTKFYDRKEIKDLLAYLRLIANNDDDLSLARIINEPKRS 424

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G             +  ++    N    M L     +                      
Sbjct: 425 IGATSFEKMARYAIEQDRSIFDAMNDLIFMGLSGKAANSAEQFYAMIKGFTEMQEYLSV- 483

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            E+   ++D          T   N+ +      + +  +                     
Sbjct: 484 TEIVEQVIDKSGY-----RTMLQNEKTIEAESRLENIEEFLS------------VTKAFE 526

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
              + K+L +  + +         +                   +      + ++    +
Sbjct: 527 ERSDDKSLIAFLTDLALIADIDALD------------------KEDASKGNIILMTMHAA 568

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + + G+ E ++P + +              L   ++   +    +        
Sbjct: 569 KGLEFPIVFIIGMEENIFPHSRS--------------LDDQDEMEEERRLMYVGVTRAEE 614

Query: 697 -LIYTRSLRE----NNIPTIASRWLQRLLV 721
            L  T +        +    ASR+L  +  
Sbjct: 615 RLYLTCAQSRTIFGRSSFNNASRFLGEISE 644


>gi|254445601|ref|ZP_05059077.1| exodeoxyribonuclease V, gamma subunit [Verrucomicrobiae bacterium
           DG1235]
 gi|198259909|gb|EDY84217.1| exodeoxyribonuclease V, gamma subunit [Verrucomicrobiae bacterium
           DG1235]
          Length = 1133

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 96/886 (10%), Positives = 227/886 (25%), Gaps = 78/886 (8%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L+  T+        + L+ E  + TG           L   +  +        ++ N  
Sbjct: 62  PLSQETVMTLNPGIARWLQFEIAKATGVSFGWD---FPLPGKLFARVLRGFEPGFDTNGV 118

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                   +L  ++        +                 ++ +  A  L  + D     
Sbjct: 119 FPEDLARWKLVEILSTL-----EDQPRFAQVRAYCQTAEGSHRLAFANRLTRLYDEYLVY 173

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                             W     + ++    + +     + +            E    
Sbjct: 174 RPDIVTQWEDDPGSSNFDWQAEI-WRRLVRLVYPKNRKPRHIARVWQDLSRGQILELGLQ 232

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA------IWNTITE 276
            +     +++ G +   P    L+  +A +    I L                I     +
Sbjct: 233 PQAWPERLLVFGVSSLAPLYLDLLDQLARYRPVHIFLLQPSDMYWADLKTTKQIQKIAMK 292

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            +    +  T+       +   LL  L  + +    L    N     +            
Sbjct: 293 AAGETGNRITSPEDWLYETGNALLPSLGKQSQMFLDLLIDKNPQQDDTAFEPPFDESSQL 352

Query: 337 S--DMRNTDILENKIPNIQKCFSD----VALIEADNEREEAISIAIALRMSLDENKK--- 387
           +        I +  +      FS     + +      R E  ++   +   LDEN +   
Sbjct: 353 ACLQSDLFTIEDRDLAKGGDAFSAYDGTLQVHSCSGRRREVETVWDLIVRRLDENPELKA 412

Query: 388 -KSALITADRNLARRVKLELTRF----GINIDISAGIPLSTTLHSSI--LTSLLNAIFKL 440
            +  ++  D    R     + R      + I  S     +         + ++L +    
Sbjct: 413 SEILVMAPDIQAYRSHIEAVFRSKRGTHLEIPFSVADNSAGNRPGVFSGIFAILQSASGR 472

Query: 441 NDFMAIATLVKHPLAK----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                +  L++ PL +    F   +            +    + +  D  +  +   +  
Sbjct: 473 ASSAEVLELLECPLLREVYSFSDQDLERIEFWIRELGITWGWDSDHRDQRESFATDRNTW 532

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAV------LLVDHILQCITPLVTYKTNKNSTCGNLSI 550
           +  ++        S   E  K           L +   + +  L    + +++     S+
Sbjct: 533 SELRSRLSAGIAFSSEVETPKGFLAYSEIEGELSETAGRLLECLDLLGSLRHNFRQTHSL 592

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
           + W    +  L  +      K     ++ +    S +  + +     + A   E    ++
Sbjct: 593 AVWQDRLLAMLATL------KSQRDDWQRDYVQASDMIHETLPALDDVFATGSEAYRALS 646

Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
             ++             +        R +  DT+ + G+N   +P+ + +  F     +S
Sbjct: 647 EKLESSASGGGYLSG-GVTFCSLKPMRAIPADTVCIMGMNRLDFPRRSNRLSFDLMAKES 705

Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT--IASRWLQRLLVLGGTDFF 728
            +      +   +      + +   H   T     +N  T    S  L+ LL    T   
Sbjct: 706 RIG-DRNTRDEDRQFFLETLLSVRSHFFITYQGTSSNSDTVNEPSAVLEELLSYLETAMP 764

Query: 729 DNLKKR--------------------GQCYLDWTRKLDY----TTKQPHYKRPKPFPPLE 764
               KR                    G    D     +      T +      +      
Sbjct: 765 LEDFKRILTQQKRQSFDPVYFQNDRNGTYDPDRAALRNRFNGLQTSEAKAVSTELEQTQG 824

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRI--LKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            +        + +  +DP   +A  +  +KL       ++ D    G L    I     +
Sbjct: 825 EEISEIELDALIRFFSDPAKAFASNVSKVKLVSEEDALEESDALLSGGLDRFQIRNEFAE 884

Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPH-IDIIWRHLFHKISHSF 867
           RI +  P     +K +         L              +++ S 
Sbjct: 885 RIARGEPLEELSIKALSQRKLLPAGLLETPTFASEYERAAQLAESI 930


>gi|114776450|ref|ZP_01451495.1| ATP-dependent DNA helicase Rep [Mariprofundus ferrooxydans PV-1]
 gi|114553280|gb|EAU55678.1| ATP-dependent DNA helicase Rep [Mariprofundus ferrooxydans PV-1]
          Length = 652

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 85/712 (11%), Positives = 190/712 (26%), Gaps = 131/712 (18%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
           +T    T +A +E+R    +  G K+  L  I +   +          L           
Sbjct: 55  ITAVTFTNKAAKEMRERLQQRLGDKANGL-RICTFHALGLAMVREHADLVGRKA------ 107

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
                               +         ++  S  + + LA + AD +D + +     
Sbjct: 108 -------------------NVSVFAGAEQKTVMRSVLSEMKLAAD-ADQVDRMLSR---- 143

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH----- 221
                  +        +  + L    + +   L ++NA       +  +R  +EH     
Sbjct: 144 ------VSSLKSGLLEVHENQLAAIRETYDALLEKMNAVDFDDLLVLPLRLLSEHDNVRA 197

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
           + +      ++     S     +L+  +   P+   +    D       W     K+   
Sbjct: 198 IWRERARYFLVDEYQDSSRIQYQLVRLL--VPDDGNLTVVGDDDQSIYGWRGAEVKNL-- 253

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                       + L +    L + R            +              ++    N
Sbjct: 254 ------------FQLERDYTNLHVVR------------LEENYRSTGSILQASNSLIANN 289

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNL 398
           ++ L   + +       + +  + N  EEA  +A  ++     +  +     ++      
Sbjct: 290 SERLGKTLRSTLGQGKPIRVWGSPNPEEEARRLAGDIKSHHARSGGQWDAYCVLYRASFQ 349

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++L L   GI   +S G+          + + L  I   +D +A    +  P    G
Sbjct: 350 SRSIELALREAGIPYHVSGGMSFFDRAEIQDILAYLRLIANFSDDLAFMRAIARPRRGIG 409

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                              G     +   L    L      K    +  +          
Sbjct: 410 SKALGDL------------GFFAMAEDCSLLEACLKEELDHKRAEALREFGD-------- 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                   ++  +     +    ++    L ++           +  + E R    L   
Sbjct: 450 --------MIVGLEHQFRHGEPDDAFDAVLDLTRLEAAIRAEADDQEVAERRMSNVLE-- 499

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                L   +    E G  +         +          K   + S  + ++    ++ 
Sbjct: 500 -----LRRWWVIHTERGGDLTEFLQHIFLLAE--------KQDDDPSGQVRLMTVHAAKG 546

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L FD + + G+ EG++P   A +           N    E+ +   A        T    
Sbjct: 547 LEFDQVYVIGMEEGIFPHRNALDE----------NRMEEERRLMYVAMTRARFLLTLSYS 596

Query: 699 YTRSLRENNIPTIASRWLQR-----LLVLGGTDFFDNLKKRGQCYLDWTRKL 745
            TR           S +L+      L  +      +   +  Q ++   RK+
Sbjct: 597 LTRRRFGTIEKCAPSPFLKEPDQSVLRWVDKDADSEEAHEEAQDHMAAMRKM 648


>gi|282860904|ref|ZP_06269970.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. ACTE]
 gi|282564640|gb|EFB70176.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. ACTE]
          Length = 815

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 58/550 (10%), Positives = 139/550 (25%), Gaps = 76/550 (13%)

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPAT 242
           L  A   +  RL E NA       +  +             +     +++     +  A 
Sbjct: 234 LAQAYALYQARLREANALDFDDIIMTTVHLLQAFPDVAEHYRRRFRHVLVDEYQDTNHAQ 293

Query: 243 ARLMSTVANHPN----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
             L+  +            +    D       +   T ++      +   +T        
Sbjct: 294 YTLVRELVGPAGEKDAPGELCVVGDADQSIYAFRGATIRNILQFEEDYPDAT-------- 345

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
               L+      + + + +N +  R+       L  +                       
Sbjct: 346 -TIMLEQNYRSTQTILSAANAVIERNESRRPKNLWTNAGAGTR----------------- 387

Query: 359 VALIEADNEREEAISIA---IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
           +    AD E +EA  IA     L  + +      A+       +R  +    R G+   +
Sbjct: 388 ITGYVADTEHDEAQFIADEIDRLTDAGEAKAGDVAVFYRTNAQSRVFEEIFIRVGLPYKV 447

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
             G+          + + L  +    D + +  ++  P                  +   
Sbjct: 448 VGGVRFYERKEVRDVLAYLRVLANPEDTVPLRRILNVP------------------KRGI 489

Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
               +   D + L+  +    A ++ +                 +   V      +  L 
Sbjct: 490 GDRAEAMIDALSLREKISFPQALRRVDEAY---------GMAARSANAVKRFNTLMEELR 540

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
           T    ++     + +    + T    +     + +    +   +E   ++  F +     
Sbjct: 541 TI--VESGAGPAVVLEAVLERTGYLAELQASTDPQDETRVENLQELAAVALEFEQDRAEE 598

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                 A     +       +      + S  + ++    ++ L F  + L GL +GV+P
Sbjct: 599 EGAGTLAEFLEKVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEFPVVFLTGLEDGVFP 658

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
              A         +  L      +   +                 RS          SR+
Sbjct: 659 HMRALGQVKELEEERRLAYVGITRARERLYLTRAAM---------RSAWGQPSYNPPSRF 709

Query: 716 LQRLLVLGGT 725
           L+ +      
Sbjct: 710 LEEIPDQHLE 719


>gi|212637392|ref|YP_002313917.1| DNA-dependent helicase II [Shewanella piezotolerans WP3]
 gi|212558876|gb|ACJ31330.1| DNA helicase II [Shewanella piezotolerans WP3]
          Length = 721

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 82/690 (11%), Positives = 172/690 (24%), Gaps = 123/690 (17%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
           +     T +A +E+R    ++ G   + +  I +   +           + NL      +
Sbjct: 57  ILAVTFTNKAAKEMRERVEKVAGGNMSRM-WIGTFHGLAHRLLRTHYKEA-NLPQSFQIL 114

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
               +L RLI      L    K   P           +                    + 
Sbjct: 115 DSDDQL-RLIKRILKSLNLDEKQYPPRHAQGYINGKKDL-----------------GLRP 156

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG- 225
             +           + +  + LKI  + + +                L+RA    L K  
Sbjct: 157 SHI-------DAGGFPIEQNLLKI-YQVYQDSCDRAGLVDFAEI---LLRAHELWLNKPH 205

Query: 226 -------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                      I++     +       +  +A     A V+   D       W     ++
Sbjct: 206 ILDHYQDRFKHILVDEFQDTNAIQYAWIRVLAGS--SANVMIVGDDDQSIYGWRGAQVEN 263

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
            +    +                               +  +       +      +   
Sbjct: 264 LHKFLGDFP--------------------------TAQTIRLEQNYRSSANILNASNELI 297

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADR 396
             N D +  K+    K    + L  A NE +EA  I   +    DE  K    A++    
Sbjct: 298 ANNPDRMGKKLWTDDKDGEPIGLYCAFNEMDEARFIVGRINDWQDEGGKLADCAILYRSN 357

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  L   GI   I  G+              L  I   ND  A   +V  P   
Sbjct: 358 AQSRVLEEALLHKGIAYRIYGGLRFFERQEIKDAMGYLRLISNKNDDAAFERVVNTPARG 417

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G     + R                                                E+
Sbjct: 418 IGGRTLEIMRTTARQ------------------------------QELTLWDACVRLLEE 447

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
           K L+    + +   +  +V  + +      +       + +   L        +    + 
Sbjct: 448 KVLSGRAANAVRGFMDLIVALRVDTEEQSLHRRTDHVIQASGLKLMYETEKGEKARARVE 507

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             EE  T +  F    E     + +A      ++            E +  + ++    +
Sbjct: 508 NLEELVTAARSFVVPEELEDMGELDA-----FLSHAALEAGEGQADEFTDAVQLMTLHSA 562

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-R 695
           + L F  + + G+ EG++P   A +                ++   +    +       +
Sbjct: 563 KGLEFPMVFMAGVEEGLFPSQMAIDEG--------------DRLDEERRLCYVGMTRAMQ 608

Query: 696 HLIYTRSLRE----NNIPTIASRWLQRLLV 721
            L  T +              SR+++ +  
Sbjct: 609 QLYITYAESRRIYGRESFARPSRFVKEIPE 638


>gi|304440180|ref|ZP_07400070.1| hypothetical protein HMPREF9225_1416 [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371229|gb|EFM24845.1| hypothetical protein HMPREF9225_1416 [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 803

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 118/356 (33%), Gaps = 45/356 (12%)

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
            S I  +  + +DI+   ++      K   +  + +    E  + +       G++E  +
Sbjct: 358 SSDIVLSLRDILDILVHNLE--RYSEKNSTNDKIKVYSIDEETIYDKKNTFFLGMSENYF 415

Query: 655 PKNTAKNPFLSRVMQSDLN--LKTAEKYI-----GQAAHDFEMANGTRHLIYTRSLRENN 707
                ++P +       +N  L ++++        +           R   ++  +    
Sbjct: 416 TYRELESPVILNSELKKINKSLLSSDEKEFRKNTNRKKRVETALQNNRFAYFSYPMYNEK 475

Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                  +   L+             +   Y+++   L     + +  +P          
Sbjct: 476 NEEETCSYFVELM------------GKDHNYVNYLENLR--VYKDYNTKPIMDLKTVLNK 521

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFI---PHFKKDPDRTDRGTLFHNIITELIKKRI 824
             +S + ++  +NDP   Y + IL+++               + G++ H+ +   +    
Sbjct: 522 FIFSATSLEIFMNDPRHFYFKYILQIEDDYYDDSILNSIPAFEMGSIVHSALESFVIDFK 581

Query: 825 ----NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
               N N  +  +   +  D  ++K   P ++   ++  + ++  + L   ++     ++
Sbjct: 582 KININLNINDKLNFFDRAFDDLYKKYLTPKYLLANFKDRYRRMLFNKLIKIQEKIKDCKE 641

Query: 881 IFVNIPA--------------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
           +   +                ++   +  +   G  DR+D+     + ITDYKTG 
Sbjct: 642 VKTEVGFGDRFSRESLSEEPIELKFGNYILRFRGKIDRVDIYDD-EIVITDYKTGS 696


>gi|15639885|ref|NP_219335.1| hypothetical protein TP0900 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189026123|ref|YP_001933895.1| hypothetical protein TPASS_0900 [Treponema pallidum subsp. pallidum
           SS14]
 gi|14285967|sp|O83870|Y900_TREPA RecName: Full=Uncharacterized protein TP_0900
 gi|3323229|gb|AAC65868.1| predicted coding region TP0900 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018698|gb|ACD71316.1| hypothetical protein TPASS_0900 [Treponema pallidum subsp. pallidum
           SS14]
          Length = 797

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 66/660 (10%), Positives = 161/660 (24%), Gaps = 92/660 (13%)

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
           +  +  T        + Q + A+ L  L    E   R   +    +      ++      
Sbjct: 139 DAVSRNTFDGRDARAYAQSAEAQDLQTLKAHYEQFLRAHALFEPSWDTPQFCAQGNTYVI 198

Query: 336 TSDMRNTDILE--NKIPNIQKCFSDV-------------ALIEADNEREEAISIAIALRM 380
                  D  E    +    +  + V              L    N REE  ++A+ +  
Sbjct: 199 VYPQLMQDFAEYAPVLQEAARATAGVLTFLPVPPFRQDTPLCCFSNVREEITAVALQVER 258

Query: 381 SLD---ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
            L       + +  +     L   V+ E     I  ++ AG  L       + + L   +
Sbjct: 259 LLRTGTPVSQIAVSVANLEELQPYVEREFRLRDIEPEVRAGFCLGAHPAGRMFSQLREFV 318

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM--DLKSLVLDR 495
                  ++  L+ +P  ++  P+   +  +  L+   +R  K S       L++  L  
Sbjct: 319 RSHGTLKSVRALLLNPHIRWADPQGAQAVVQYGLQQACIRSWKQSGTYCNVWLQAFALHC 378

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
             T++   H    Q       +    L+       +               +   S   +
Sbjct: 379 ERTEQERQHQQCAQRFFLTLLRFARALVEARSFVRMQKAYGAFRAACLLPASAHTSGAEE 438

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
              +     C                + L++L  +              +   + +L   
Sbjct: 439 EIASSAFASCSAGEDDAVMARCVCVLQELAALERRFAHV-----VPPDPYSFFVQQLAQQ 493

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
             V  +      L I     +    F    +  ++         +  FL   +++    +
Sbjct: 494 MYVPVRAGVG--LAIFPYRVAAAAPFLHHFVINVSHEASSVRYQRGTFLRADVRAAFGFE 551

Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL------------------- 716
             +                + + ++ S++  +     +R+                    
Sbjct: 552 DEDVTEA----FLSAYATAQTVYFSCSVQAFSGVQRPNRFFSNVHPPVSSTLTGRASQTP 607

Query: 717 -----------------------------QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                                        Q L   G        + + +        +  
Sbjct: 608 SPAGIASETGGAVPQYPAVRYEEDALQAEQDLYAQGAPVPSSLYRTQQERLRKAASLIPA 667

Query: 748 T----------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                         P                  S +++      P A +  R+L +  + 
Sbjct: 668 AGRSYIRDSFAQALPPLTAVLHARHFHHAAVKVSQTDLNLFFRCPAAWFLERVLDVAPLS 727

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ---IIDSHFEKENLPPHIDI 854
              +  D    G   H ++  L  +   ++    +  M++         E+      +  
Sbjct: 728 RRPRLVDPRVLGVFSHVVLERLYNRIACEDECFFSAHMERYRLWTQEAIEQVFSERAVRA 787


>gi|313680112|ref|YP_004057851.1| ATP-dependent DNA helicase, rep family [Oceanithermus profundus DSM
           14977]
 gi|313152827|gb|ADR36678.1| ATP-dependent DNA helicase, Rep family [Oceanithermus profundus DSM
           14977]
          Length = 719

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 64/644 (9%), Positives = 158/644 (24%), Gaps = 79/644 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PP 102
           A V     T +A  E+R     + G+ +  L  + +                        
Sbjct: 55  AEVLAVTFTNKAAGEMRERLSRMVGRAAGEL-WVSTFHSASLRILRRYGERIGLKPGFVV 113

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
             +  + + L  ++     +                             +  ++D I+  
Sbjct: 114 YDDDDQRVLLKEVLGSLGLEARPTY------------------------VRAVLDRIKNR 149

Query: 163 EKKWEDLHALKNEKYGMWWL--LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
               ++  A     +   W+  L    +      + +RL E NA       +  +     
Sbjct: 150 MWSVDEFLA-----HADDWVGGLTKQQMAEVYARYQQRLAENNAVDFNDLLLRTIELFER 204

Query: 221 HLMKG-----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           H             I +     + PA  RL   +A      +V+   D       +    
Sbjct: 205 HPEALEAVRQRARFIHVDEYQDTNPAQYRLTKLLAGDEANLMVV--GDPDQSIYGFRNAD 262

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++      +                            G V   +       +      +
Sbjct: 263 IQNILGFERDYR--------------------------GAVVYRLEANYRSTAAILRVAN 296

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-RMSLDENKKKSALITA 394
               RN   LE  +  ++     V L  A + REEA  +A  + R++ +      A++  
Sbjct: 297 ALIERNQQRLEKTLRPVKPAGEPVRLYRAPDHREEAAFVAREVARLAGERALDDFAVLYR 356

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++    R  +   I  G+          + +         D +A+  ++  P 
Sbjct: 357 TNAQSRVLEEAFRRLNLPARIVGGVGFYERREVKDVLAYARLAVNPADDVALRRVINVP- 415

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                     + +   L   A     +  +       +L                +    
Sbjct: 416 -----ARGVGAASVGKLAAWAQAQGVSLLEAAHRAGELLAARQAAAVAKFTDLLTTLREA 470

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
            +       +  +L         +   +S     ++ +  +      +     EH     
Sbjct: 471 AEGTGPEAFLRLVLAETGYSEMLRREGDSEPRLENLEELLRAAAEWEE-----EHGGSVA 525

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
            + +E   T  +         S           +   ++    V+  +    +       
Sbjct: 526 EFLDEIALTARAEEPNAAPEKSVTLMTLHNAKGLEFPVVFVVGVEEGLLPHRSSLGSDAE 585

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                    + +    E ++   + +     +  +   +    E
Sbjct: 586 IEEERRLLYVGITRAQERLYLTLSEERETWGQRERVRPSRFLEE 629


>gi|166033310|ref|ZP_02236139.1| hypothetical protein DORFOR_03036 [Dorea formicigenerans ATCC
           27755]
 gi|166027667|gb|EDR46424.1| hypothetical protein DORFOR_03036 [Dorea formicigenerans ATCC
           27755]
          Length = 763

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 73/715 (10%), Positives = 186/715 (26%), Gaps = 123/715 (17%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT--GKKSTILPIIKSLG 82
           +L   +        +NP    ++     T +A  E+R     +   G +S     + +  
Sbjct: 46  VLTHRIAYLIEEKGVNPW---NILAITFTNKAAAEMRERVDNLVGFGSESIW---VSTFH 99

Query: 83  DVVEEKFTAD-LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            +          LL Y+ N  + +      L R +         I K+            
Sbjct: 100 SMCVRILRRHIALLGYDTNFTIYDTDDQKTLMRDVCKLLQIDTKIYKERM---------- 149

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                     L   I   + E    E+        +          +    + + ++L  
Sbjct: 150 ----------LIGTISHAKNEMLTPEEFRLQAGGDF------HQKKIADVYEEYEKQLRA 193

Query: 202 LNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            NA       +  ++            +     I++     +      L+  +A+     
Sbjct: 194 NNALDFDDLLLKTVQLFQTQHDVLEYYQERFRYIMVDEYQDTNGVQFELVRLLASRYQNL 253

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V+   D       +     ++        T            +  L+        + N 
Sbjct: 254 CVV--GDDDQSIYKFRGADIRNILDFEKVFT---------KAAVIKLEQNYRSTANILNA 302

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +N +   +       L  D  D                    +A  + D   +EA  I  
Sbjct: 303 ANAVISHNHGRKDKTLWTDNEDG-----------------DKIAFRQFDTAFDEAEYIVS 345

Query: 377 ALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            ++  +++   + + +A++      +R  + +     I   I  GI          + + 
Sbjct: 346 DIKEHVEKGECDYQDNAILYRTNAQSRMFEEKFVTANIPYKIIGGINFYARREIKDILAY 405

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L  +    D +A+  ++  P    G                                  +
Sbjct: 406 LKTVDNGQDDLAVRRIINVPKRGIGLT-------------------------------SI 434

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
           +R+           ++     +        V  +   +  +  +K +      +  + + 
Sbjct: 435 NRVQEYAAMHEKGIYECLKGADLIPDIGRGVSKLESFVALIEHFKVDAKELTLHELMQEI 494

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
              T          E      +   +E       + ++ E           +++ +  + 
Sbjct: 495 IDETGYIESIQAESEIEAQARIENIDELLNKVVAYEEVCEE-HDEPVTLSGFLEEVALVA 553

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
           D   +    E S  + ++    ++ L F  + L G+ +G++                 + 
Sbjct: 554 D---IDNLDENSDYVVLMTLHSAKGLEFPRVYLAGMEDGLF------------PSYMTVT 598

Query: 674 LKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRE----NNIPTIASRWLQRLLVLG 723
               ++   +    +         L  T + R            SR+L+ + +  
Sbjct: 599 ADDPDELEEERRLCYVGITRAQSELTMTCARRRMVRGETQYNKMSRFLKEVPLEL 653


>gi|295688867|ref|YP_003592560.1| UvrD/REP helicase [Caulobacter segnis ATCC 21756]
 gi|295430770|gb|ADG09942.1| UvrD/REP helicase [Caulobacter segnis ATCC 21756]
          Length = 806

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 78/721 (10%), Positives = 183/721 (25%), Gaps = 116/721 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R     I G ++  L  + +   V  +                  
Sbjct: 89  ELLAVTFTNKAAREMRERITHIIGPEAEGLRWLGTFHSVAAQI----------------- 131

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D  + L  +  L    +     W  + L+ IID  +     
Sbjct: 132 LRRHAELIGLKSNYTIIDTDDQERLLKQ--LIEAENIDAKRWTPRILSQIIDGWKNRGWT 189

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            + +   +  ++     +         + + ERL  LNA       +  +     H    
Sbjct: 190 PDRVPTSEAGEFANGKGITL------YRQYQERLRILNACDFGDLLLHNISLFTGHPDVL 243

Query: 226 -----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    +++     +  A    +  +A        +   D       W      +  
Sbjct: 244 DEFQRRFKYVMVDEYQDTNVAQYLWLRLLAQGRQNVCCV--GDDDQSIYGWRGAEVDNIL 301

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +      P   + +L          +     +     GR                 
Sbjct: 302 RFERDF-----PGAKVVRLERNYRSTEHILAAASGLITTNKGR----------------- 339

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS--LDENKKKSALITADRNL 398
               L   +    K    V +    +   E+  +A  +  +        + A++      
Sbjct: 340 ----LGKTLWTEAKGGEKVKVSGVWDGEAESRLVADEIERAKKAGRKYSQMAILVRASFQ 395

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            R  +       I   +  G             + L  I   +D +A   +V  P    G
Sbjct: 396 MRAFEERFVMLQIPYKVVGGPRFFERAEIRDAHAYLRLIQSPDDDLAFERIVNTPKRGIG 455

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                       LE ++                                  +  +     
Sbjct: 456 DTSVQKLLQIARLEGIS----------------------------------TVEAARVII 481

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            +  L       ++  +       S  G++      +  +                L   
Sbjct: 482 GSDDLPARTRTALSNFIRDLDRWRSMVGSVHHQRLLETVLEESGYTDA------LRLDKG 535

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
              +T      +++++          +++ ++ ++D      +      ++I+    ++ 
Sbjct: 536 PTSQTRLENLKELVQSMGAFD-TLEAYLEHVSLVMD----LDREATGDAVWIMTLHSAKG 590

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F  + L G  EGV+P   + +         D   K  E+    A      A     + 
Sbjct: 591 LEFPLVFLPGWEEGVFPSQRSMD---------DKGEKGLEEERRLAYVGITRAREEARIS 641

Query: 699 YTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
           +  + +        + SR++  L +       +     G   +  T    +        +
Sbjct: 642 FVANRQVYGRWTSQLPSRFVDELPIAHVDAASETGYYGGGPGMQSTAASRWDDPGTSAFQ 701

Query: 757 P 757
            
Sbjct: 702 A 702


>gi|327469639|gb|EGF15108.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK330]
          Length = 762

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 68/627 (10%), Positives = 173/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                    K + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYKAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKANIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  +++   ++  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVEKIRNFAFNQEISLLDASTNILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      ++  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMILDLRERLDDFTVTELVEAVLEKTGYATVLAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  S  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPSD-ESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRAS 587


>gi|253698974|ref|YP_003020163.1| exodeoxyribonuclease V subunit beta [Geobacter sp. M21]
 gi|251773824|gb|ACT16405.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. M21]
          Length = 1129

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 105/983 (10%), Positives = 244/983 (24%), Gaps = 94/983 (9%)

Query: 57   IQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
             + L    +    + +     I ++    +     +   S +L        +   L  + 
Sbjct: 98   ARRLLGSAVRSFDEAA-----IFTIHGFCQRMLQDNPFESGSLCDTELVTDQGKILMEIA 152

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
              +         +    +  +  +SP + + LA+ +    +     +   +D   L +  
Sbjct: 153  QDYWRINCYGQPEDRIAAAGAAKVSPESLLKLAQRVCGDPNAAVIPD-PPDDATELDD-- 209

Query: 177  YGMWWLLAAD--FLKIASKYWTERLVELNASSPVGYQIALMRAEAE------HLMKGTKG 228
                WL      F         +R    N  S     + L  A          L++    
Sbjct: 210  ----WLQGLKRGFFDYLRAELPKRKRLKNLRSFDDLLLDLHAALLRPASPLPRLIRERYQ 265

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT------------- 275
              +I     + P    +   +    + A      D       +                 
Sbjct: 266  AALIDEFQDTDPLQFAIFDAIYPVGHEAPFFLIGDPKQAIYSFRGADIFAYMGAAQATKE 325

Query: 276  ---------------EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN-- 318
                           +    + +S      +PQ    ++      K   V+     +   
Sbjct: 326  RHTLLQNFRSEAGLIDAVNTLFASRELPFLYPQIGFNRVEAAPKEKSRLVEAGQRKAPLK 385

Query: 319  -EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
              +  R               +  T   E            + + E   + EE+      
Sbjct: 386  LWLAPRKDAGKPINKGDAWEQLPETVAAEISRLLRDGAAGKLTVEELQKDAEESE---KW 442

Query: 378  LRMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNA 436
            +R +++   K  A++      A+ ++  LTR GI  +  SAG  L  +  ++ L  LL+A
Sbjct: 443  VRRAVE--PKDIAVLVRANRQAKLMQRALTRRGIPSVLCSAG-NLFESDEAAELLRLLSA 499

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLS-----RAKNALELVALRGNKNSYDIMDLKSL 491
            + +      +   +   L      E           +  LE      +  +       +L
Sbjct: 500  VAQPGHESLLRGALATELVGVSGTELARLMNDEKGWEEILEEFRGYHDTWNSGSCMSMAL 559

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
                    +          R           +    +     +                 
Sbjct: 560  QFMEKREVRKRLLAEPMGERRLTNLLHAIETMHQAQVNERLGMEAVIAWLACRITEEPKK 619

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            +  ++ +   +           +   E     L   +++          +  E   ++  
Sbjct: 620  EEYEIRLETDEAAVQ-LVTIHKSKGLEYPIVFLPFCWAEYAGKDEGALFHDEEGRVVLDI 678

Query: 612  LIDGETVKPKIEKSSTL-FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
              +             L   L  L   L                  ++A +  L      
Sbjct: 679  GSEQMVEHKAQAAREALAESLRLLYVALTRGKHRTYLTWGAFKDAGDSALHYLLHPGQTP 738

Query: 671  DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
                 T      +   D   A+    +        +  P   +      L         +
Sbjct: 739  VKGQVTLSDADIRERLDTLAASSAGKIEVLDLPAADLAPYRPNDEKAPDLAPLPFTGEVS 798

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR- 789
               R   +   +    +T + P   R +  P  E   R    + I        A      
Sbjct: 799  RDWRVASFTSLSSHKHHTAELPD--RDEESPIEERPGRDIEPTGIFAFPKGAKAGIFLHK 856

Query: 790  --------ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI-ID 840
                     +     P  ++  D+      +   + ++++  +     +    + Q+ ++
Sbjct: 857  IFEDLDFTRVGEQLSPLVEEQLDKHGFAPDWSQAVRDMVQNVLQAPLGDGGIALAQVGLE 916

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-KMAIESIGIHLT 899
                +      +  +      + +  F             + +     +++   +   L 
Sbjct: 917  RRLTEMEFFFPLSHVTSERLREAAARFTAGHGAAGVPGFPVDLADLFSRLSFAPVQGMLL 976

Query: 900  GFADRIDLLKSGFVDITDYKT----------GDNPKKETAQKLIDP-QLSLEAAALKAGS 948
            GF D +     G   I D+K+          G    K+  ++   P Q  L   AL    
Sbjct: 977  GFIDLVFEHG-GRYYIVDWKSNHLGNAPGDYGQAALKKEMEENFYPLQYLLYTVALDNYL 1035

Query: 949  FSQID----CRKVANLFYIRLKQ 967
              +I      R    +FY+ L+ 
Sbjct: 1036 RLRIPDYHYDRHFGGVFYLFLRG 1058


>gi|332362791|gb|EGJ40585.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK355]
          Length = 760

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 67/627 (10%), Positives = 171/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A       V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLAMRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  +++    +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVEKIRNFASSQEISLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRERLDDYTLTELVEAVLEKTGYAASLAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  +  ++   +    +  L          ++SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPAD-ESGLDKLSRFLNDLALIADTDDGDQESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRAS 587


>gi|164425999|ref|XP_960368.2| hypothetical protein NCU04733 [Neurospora crassa OR74A]
 gi|157071159|gb|EAA31132.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 850

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 56/546 (10%), Positives = 141/546 (25%), Gaps = 63/546 (11%)

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIP 240
                 L++    +   L   N        +  +    +     +    ++I     +  
Sbjct: 174 QRGQRDLEVCYTEYQTHLERSNLLDYDDLLVRCVELLRKFPSCVSNIQTVLIDEYQDTNG 233

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
               LM  +A       ++   D       W +   K+      +   +           
Sbjct: 234 VQYELMRLLAQKHQRITIV--GDPDQSIYGWRSAEIKNLWRLLRDYPKTDEI-------- 283

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
             L+      + + ++S       ++              +       +  ++       
Sbjct: 284 -SLEENYRSSQAILDLS-----LLVIQQDKKRYQKVLKPVHDRGSRPVLRKLK------- 330

Query: 361 LIEADNEREEAISIAIALRMSLDENKK-----KSALITADRNLARRVKLELTRFGINIDI 415
                N   EA  I   +R +L  +         A++    +L+R V+  L + GI   +
Sbjct: 331 -----NASTEAEWIVAEIRRALLMSGSMLTHNDVAVLLRSASLSRHVESALGKAGIPYRM 385

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-RAKNALELV 474
             G           +   L  I + ++  A   ++  P    G               L 
Sbjct: 386 VGGFKFYERSEIKTILDYLRVIHQPDNNDAFGRIMNVPKRGIGDGTIKNLIEEAEKSSLS 445

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                             + + A QK +  +    + + ++ +E A      ++  I  L
Sbjct: 446 LYSLLVKHCRGDRTAKTKITKHAEQKISGELIRMLNGIRKKMEEAAESNPFGLVDLIEHL 505

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
           +T    +N         D  +      + + L            E+         +  E 
Sbjct: 506 LTALNFQNYLQVTYP-DDHEQRWANVQEFISLANDFVRDLHVSGEDALPEIEGLEQSKEE 564

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                    +++  ++   D +  +   E    + I     ++ L +  + +  +  G  
Sbjct: 565 E-----VLPQFLANVSLASDAQKGEEGQENKPLVTISTIHAAKGLEWPIVFIPAVYNGSI 619

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY----TRSLRENNIPT 710
           P   +                  E    +    +      + L+Y          ++  T
Sbjct: 620 PHMRS------------------EDGDEERRLLYVAMTRAQSLLYLSYPVYHSPGSSERT 661

Query: 711 IASRWL 716
             S ++
Sbjct: 662 EMSSFV 667


>gi|289666094|ref|ZP_06487675.1| DNA-dependent helicase II [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 723

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 63/693 (9%), Positives = 159/693 (22%), Gaps = 120/693 (17%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E+R         G +      I +   +           +        + +
Sbjct: 55  VTFTNKAAGEMRHRTDLQLRNGSRGMW---IGTFHGLAHRLLRLHWQDARLPEGFQVMDS 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R++                                       I+  + E ++
Sbjct: 112 DDQLRLVKRVVQSLELDESKYPPKQMSWW---------------------INEQKDEGRR 150

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +      +    W             + ER             +       +     
Sbjct: 151 PQHIQ----PEPNDDWTEVRRQ---VYAAYQERCDRSGLLDFAELLLRAHELLRDTPALL 203

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A       V    D       W     ++  
Sbjct: 204 AHYRARFREILVDEFQDTNAIQYAFVRVLAGESGN--VFVVGDDDQAIYGWRGAKVENVQ 261

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G  +  +       +      +     
Sbjct: 262 RFLKDFP--------------------------GAQTVRLEQNYRSSANILGAANAVIAH 295

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA  +    R  + +     + A++      
Sbjct: 296 NPDRIGKQLWTDSGDGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAQ 355

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L    +   +  G+            + L  +   +D  A    V  P     
Sbjct: 356 SRALEEALISEQLPYRVYGGMRFFERAEIKDALAYLRLLTNRSDDAAFERAVNTP----- 410

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        +    LD +        +  W++ +    + 
Sbjct: 411 --------------------------TRGIGDRTLDEVRRLARANALSLWEAAMLCTQQN 444

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                  + L     LV     +          D   +     ++   +    L +    
Sbjct: 445 TLAARARNALATFLSLVGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGLDSESRT 504

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E    L S+ S+             E +  +                  + ++    ++ 
Sbjct: 505 ENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMTLHSAKG 564

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + L GL +G++P   +              L+ + +   +    +      R  L
Sbjct: 565 LEFPIVFLVGLEDGLFPSARS--------------LEESGRLEEERRLAYVGITRARQKL 610

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVLGGTD 726
           +   +        +   + SR+L+ +      +
Sbjct: 611 VLCYAESRRIHGQDNYNVPSRFLREIPRDLLNE 643


>gi|218528416|ref|YP_002419232.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
 gi|218520719|gb|ACK81304.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
          Length = 795

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 81/708 (11%), Positives = 182/708 (25%), Gaps = 115/708 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E++     + G     +P + +   +  +                  
Sbjct: 93  DILSVTFTNKAAREMKHRIGGLIGPAGEGMPWLGTFHAIGTKI----------------- 135

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +  +    +     W A++LA  ID  +     
Sbjct: 136 LRRHAELVGLRSDFTILGTDDQLRLMKQ--VISDQNIDEKRWPARSLAHTIDGWKNRGLS 193

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK- 224
            E +      +   +       L  A +     L  ++    +   + L R   + L   
Sbjct: 194 PEQVP---PGEAQSFAFGKGGQLYAAYQARLATLNAVDFGDLLLLCLKLWRENPDILANY 250

Query: 225 -GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                 I++     +  A    +  +A        +   D       W      +     
Sbjct: 251 QDRFRYILVDEYQDTNVAQYLWLRLLAQARKNVACV--GDDDQSIYGWRGAEVDNILRFE 308

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +                            G     +                   +N  
Sbjct: 309 HDFP--------------------------GATVVRLERNYRSTGHILAAASGLIAKNEG 342

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLARR 401
            L   +    +    V +  + +  EEA  +A ++           + A++       R 
Sbjct: 343 RLGKTLRTEDEAGEPVTVTGSWDSEEEARQVAESIESLQRRGHALSEIAVLVRISAQMRE 402

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           ++    + G+   +  G             + L       D +A   +   P    G   
Sbjct: 403 IEDRFVQVGLPYRVIGGPRFYERAEIRDALAYLRVTMNGADDLAFERIFNTPKRGLGDAT 462

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                                            +    +        +   ++E K  A 
Sbjct: 463 LQTLHT---------------------------QARADRIPLLAAARKLIETDELKPRAR 495

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            ++  +++  T  V     K       +I + +  T    ++   D   +L NL      
Sbjct: 496 SMLRGLVESFTRWVRLVETKPHPEVAQTILEESGYTEMWQKDRSADAAGRLENL------ 549

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
                 F + +E    + A       ++                  + ++    ++ L F
Sbjct: 550 ----KEFVRSMEEFPDMAAFLEHVSLVMEASEAEGA--------DRVSLMTLHAAKGLEF 597

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
           DT+ L G  +G++P   A +         +      E+    A      A     L +  
Sbjct: 598 DTVFLPGWEDGLFPNQRAID---------ESGRAGLEEERRLAHVGLTRARKLAKLSFAV 648

Query: 702 SLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
           + R +     TI SR++  L          ++ +    +     + D 
Sbjct: 649 NRRIHGLWSSTIPSRFIDEL-----PPQAVDVVEAPAHFSAGASRFDR 691


>gi|294625145|ref|ZP_06703789.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292600564|gb|EFF44657.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 728

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 64/710 (9%), Positives = 164/710 (23%), Gaps = 120/710 (16%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E+R         G +      I +   +           +        + +
Sbjct: 60  VTFTNKAAGEMRHRTDLQLRNGSRGMW---IGTFHGLAHRLLRLHWQDARLPEGFQVMDS 116

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R++                                       I+  + E ++
Sbjct: 117 DDQLRLVKRVVQALELDESKYPPKQMSWW---------------------INEQKDEGRR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +      +    W             + ER             +       +     
Sbjct: 156 PQHIQ----PEPNDDWTEVRRQ---VYAAYQERCDRSGLLDFAELLLRAHELLRDTPALL 208

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A       V    D       W     ++  
Sbjct: 209 AHYRARFREILVDEFQDTNAIQYAFVRVLAGESGN--VFVVGDDDQAIYGWRGAKVENVQ 266

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G  +  +       +      +     
Sbjct: 267 RFLKDFP--------------------------GAQTVRLEQNYRSSANILGAANAVIAH 300

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA  +    R  + +     + A++      
Sbjct: 301 NPDRIGKQLWTDSGDGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAR 360

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L    +   +  G+            + L  +   +D  A    V  P     
Sbjct: 361 SRALEEALISEQLPYRVYGGMRFFERAEIKDALAYLRLLTNRSDDAAFERAVNTP----- 415

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        +    LD +      + +  W++ +    + 
Sbjct: 416 --------------------------TRGIGDRTLDEVRRLARASALSLWEAAMLCTQQN 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                  + L     L+     +          D   +     ++   +    L +    
Sbjct: 450 TLAARARNALATFLSLIGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGLDSESRT 509

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E    L S+ S+             E +  +                  + ++    ++ 
Sbjct: 510 ENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMTLHSAKG 569

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + L GL +G++P   +              L+ + +   +    +      R  L
Sbjct: 570 LEFPIVFLVGLEDGLFPSARS--------------LEESGRLEEERRLAYVGITRARQKL 615

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
           +   +        +   + SR+L+ +      +    ++      L   R
Sbjct: 616 VLCYAESRRIHGQDNYNVPSRFLREIPRDLLNEVRPKVQVSRTASLGAAR 665


>gi|289751887|ref|ZP_06511265.1| superfamily protein I DNA and RNA helicase [Mycobacterium
           tuberculosis T92]
 gi|289692474|gb|EFD59903.1| superfamily protein I DNA and RNA helicase [Mycobacterium
           tuberculosis T92]
          Length = 488

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 71/257 (27%), Gaps = 28/257 (10%)

Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                   D     D               P    P   S S + +L+ DP     R + 
Sbjct: 252 IDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGARQRLMC 311

Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
           +L   P           G  FH  + +     +  +  ++     + +         P  
Sbjct: 312 RLPKRPDPH-----AWLGDAFHAWVQQFYGAELLFDLGDLPGAADREV-------GDPEE 359

Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
           +  + R                  ++     V +P +M I      + G  D + +   G
Sbjct: 360 LAALQRA-----------FTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVFVDPDG 406

Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
              + D+KTG  P    A +    QL++   A    +        V   FY  ++    +
Sbjct: 407 GATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VRSGITV 463

Query: 972 DCITNDKKKYSADELSE 988
                      A  L++
Sbjct: 464 VPDELPAPGELAMLLTD 480


>gi|269218749|ref|ZP_06162603.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 848 str.
            F0332]
 gi|269211860|gb|EEZ78200.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 848 str.
            F0332]
          Length = 1158

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 109/1036 (10%), Positives = 243/1036 (23%), Gaps = 135/1036 (13%)

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
            P  + + D    +    ++    ++P V++      +  + L       D    +     
Sbjct: 145  PTARLVTDAERFQLMDSVVAEGAVDPDVASRHGRARIVEVALCLAAGGIDNGVSV-ERMR 203

Query: 136  LSLPISPANAIWLAKNLADI----IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                   A    L K+        +     E  +WE L           + L    L   
Sbjct: 204  EFFEGEAAALERLGKDPRRFTKGDMADAGMESAEWERLKRDWRALAKADFALQLACLPAV 263

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLM 246
             + + ER   L                  +             +++     +  + A  +
Sbjct: 264  -EAYMERKRSLGLVEFADQVATASEVLGRYGRIGEETASRHRLVLLDEYQDTSVSQAVFL 322

Query: 247  S-TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
               +     G  V    D +     W   +  +    +                +  L +
Sbjct: 323  RRALGGAGEGRSVCAVGDPNQAIYGWRGASANALADFAVAFAGE--------APVRRLTL 374

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                      +       + +   +                               I   
Sbjct: 375  STSFRSDAAILDAANAVAAPLDEAAAGVRKLKARPGCGPGRVVEARPLFAEDSYRAIARR 434

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
             E  +A                + A++   R+   RV   L   GI  +I  G  L    
Sbjct: 435  VEDVQAEVARTRAAQ------PEIAVLCRKRSSIERVADALRERGIAYEIVGGESLIERP 488

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                + + L  + + +    +  L+      +G     +   +     +A R   ++   
Sbjct: 489  EIVTVRAALGVLARPSHGGLLVRLL----LHWGVGSDAMRALREWSWELARRSVGDAPLD 544

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL---------------LVDHILQC 530
               ++ +++ ++   +   V      L     +   L               L D + +C
Sbjct: 545  PRAEAGLVEAVSRLPDPEWVGSRGLALDSAAFDRLSLVSKSLASLRSSVHLPLADLVEKC 604

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL--------------DEHRKLPNLW 576
            I+ L       +   G+  +       V   +                  D   +     
Sbjct: 605  ISQLGLDLAAASRAEGSQRVRTSLDSFVALARGYSAVHPGASVRDFVDWLDLVERHEYGG 664

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE- 635
             EE G   S            +  +A + ++    +   E V  +  +  +     T   
Sbjct: 665  EEEAGIDASEEVEVHAGVVQILTVHAAKGLEWRDLVAIPEMVSTQFSEKESGKSWTTDPS 724

Query: 636  --SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM--- 690
                 L  D   L       + +        SR +++D+      +    A   F     
Sbjct: 725  VFPFPLRADRAHLPRFRPSDFSEKLDAALAYSRFLRADIPAHENAEARRLAYVAFTRPQA 784

Query: 691  -------ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                       + +  +    +       S +L  +    G     ++    +   + T 
Sbjct: 785  ELFLAGYGLAAKEIPPSFVEGDAVSLLPRSVFLDDVRKGAGVLPAADV-AGPEWPPELTE 843

Query: 744  KLDYTTKQPHYKR-----PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
            +   T             P+P             +++ +         +           
Sbjct: 844  ECPATMPLAEATERTGGPPEPVIDYANADLPLWPADVVR-AGPGAGHASEPGGSGGGSGD 902

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR- 857
              + P   +R  ++      LI++R   + P +                 P      WR 
Sbjct: 903  SGESPAPPERVAMWRRSADLLIREREAASRPAVPERPYVTATDVVHLNEDPAAFLAQWRR 962

Query: 858  --------------HLFHKISHSFLE------------------------------HEEK 873
                           +  +I+  +                                 E  
Sbjct: 963  PTPQRPSRAARTGTEVHSRIAEFYERPARLDIDSVMAQGEQPVDMDVLTREEEARLLEAF 1022

Query: 874  IQSSIEK---IFVNIPAKMAIESIGIHLTGFADRI-DLLKS---GFVDITDYKTGDNPKK 926
              S   +   I V       I      +    D + D           I D+KTG  P  
Sbjct: 1023 RASRWARMPAIAVEESLSAVIGGR--VVRCTIDAVLDTSAEPGLSEATIVDWKTGRRPDG 1080

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
            E      + QL++   A        I     A   Y+R  +  +        ++  A  +
Sbjct: 1081 EALAS-RELQLAIYRLAWARAHGRDIADVG-ACFVYLREPEGRQTLAAAKLTEEEVARRI 1138

Query: 987  SEKSLKNLIEIVTLLQ 1002
             +     +   + L +
Sbjct: 1139 EDSLAAGMEAGIGLWR 1154


>gi|238763616|ref|ZP_04624576.1| DNA helicase II [Yersinia kristensenii ATCC 33638]
 gi|238698094|gb|EEP90851.1| DNA helicase II [Yersinia kristensenii ATCC 33638]
          Length = 672

 Score = 85.0 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 72/702 (10%), Positives = 157/702 (22%), Gaps = 119/702 (16%)

Query: 50  YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP---VS 104
              T +A  E+R     + G          I +   +      A   +  NL      + 
Sbjct: 60  VTFTNKAAAEMRHRIEHLIGTSQGGMW---IGTFHGLAHRLLRAH-HMDANLPQDFQILD 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +  +L  L RL+                                           + E  
Sbjct: 116 SDDQLRLLKRLVKALNLDEKQWPPRQAMWYINGK---------------------KDEGL 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
           + + + +  N     W            + + E              +            
Sbjct: 155 RPQHIESYGNPVEATWLR--------IYQAYQEACDRAGLVDFAELLLRAHELWLNKPHI 206

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +       +  +A   +  +++   D       W     ++ 
Sbjct: 207 LNHYRERFTNILVDEFQDTNNIQYAWIRLLAGERSNVMIV--GDDDQSIYGWRGAQVENI 264

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +                            G  +  +       S      +    
Sbjct: 265 QRFLKDFP--------------------------GAETIRLEQNYRSTSNILTAANALIA 298

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397
            N   +   +         ++L  A NE +EA  +   +R   D        A++     
Sbjct: 299 NNDGRMGKNLWTEGVEGEPISLYCAFNELDEARFVVNRIRAWRDNGGALNDCAILYRSNA 358

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L +      I  G             + L  I   ND  A   +V  P    
Sbjct: 359 QSRVLEEALLQTATPYRIYGGQRFFERQEIKDALAYLRLISNRNDDAAFERVVNTPTRGI 418

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G     + R          R          +    +                  L+ E  
Sbjct: 419 GDRTLDVIRQTAR-----DRQLTLWQSTRAMLQEKVLAGRAASALQRFVELVDSLAHETA 473

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           ++ + +    +   + L +    +    G   I +  +L     Q    DE +       
Sbjct: 474 DMPLHVQTDRVMRDSGLWSMYEQEKGEKGQARIENLEELVNATRQYSYQDEDQ------- 526

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                                  + +     ++                 + ++    ++
Sbjct: 527 -----------------------DLMPLQAFLSHAALEAGEGQADAYQDAVQLMTLHSAK 563

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + + G+ E           F S++   +      E+ +         A     L
Sbjct: 564 GLEFPQVFIVGMEE---------GMFPSQMSLDESGRLEEERRLAYVG--VTRAMQKLTL 612

Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
            Y  S R          W +    + G        K G+ + 
Sbjct: 613 CYAESRRLYGKEVNHRPWQKPRHFVSGNSGKPWPGKAGRHWR 654


>gi|320532757|ref|ZP_08033542.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135029|gb|EFW27192.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 712

 Score = 85.0 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 75/667 (11%), Positives = 183/667 (27%), Gaps = 61/667 (9%)

Query: 46  SVTIYVPTKRAIQELR---SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
              +  PT+     LR   +  +        +   +++   +     T  L         
Sbjct: 64  DAVLLAPTRARADWLRGRAAHLLREGHGDGVV--RVRTPAALALTILTTSL--------- 112

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
              ++       ++L    +   +   +   +   LP     +      L +++      
Sbjct: 113 --TMRPDPLPPPVLLAGAEEDSVLASMISTVTWPGLPTEATGSRAFRSELRNLLARAGEL 170

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLK---IASKYWTERLVELNASSPVGYQIALMRAEA 219
               ++L  L        W  A+  L+      +   ER  +         Q   + A +
Sbjct: 171 GVNADELADLGRRLEVPIWGPASQLLRTWDAQGRASAERRAQTRKMDTARLQDRAVEALS 230

Query: 220 EHL------MKGTKGPIIIAGSTGSIPATARLMSTVAN---HPNGAIVLPGLDCHIPTAI 270
                     +     +++        ATARL++ +A      + A ++   D  +    
Sbjct: 231 SWDSDVVTVPRPVPDLVLVDDYQDCTAATARLLTALATPDPDGHRAQIVVLGDPDVAVET 290

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
           +   T               H  +   +L   L         +  V  +   R  V   +
Sbjct: 291 FRGGTPSLL------IAAEDHSGFGATRL--QLTTCYRGNPGIAAVVADQSARVPVTGTT 342

Query: 331 FLPPDTSDMR--NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-- 386
                T   +                  + V +I A +  +E   +A ALR+    +   
Sbjct: 343 AHRQTTLAPQSSARLSSGGSDDERPAAAAGVEVILASSTWQEHAHVARALRLEHVHHGIA 402

Query: 387 -KKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHSSILTSLLNAI------- 437
             + A+I      A  +  +L R G+ +   +  + L     ++ L  +  A        
Sbjct: 403 WSQMAVIARSAADAETLARDLRRRGVPLASRTPAVLLRAEPAAAALLDIGRAAIRDQLGG 462

Query: 438 -FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
             +     A  TL+  PL      +    R +   +  A     +  +           +
Sbjct: 463 HGEPPQRDAAITLLTSPLVGLTTMDLRRLRRRLRQDPEATATRVSGTETWARIGADAALL 522

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY---------KTNKNSTCGN 547
           A   +      +   L  E        +    + I  L            +  +      
Sbjct: 523 ALLADTEQASAFARSLDGEPLSTQADRLLTAARIIEALRAATGETPADAPRDVEALLWAA 582

Query: 548 LSISDWTKLTVTCLQNVCLDEHRK--LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
            + SD  ++             R         + +  T     +++       +  +   
Sbjct: 583 WNASDRAEVWRATALLPSASPVRSLLSEAAEHDLDVVTALFKRAEVWAERHPGQDASCFL 642

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            ++   ++  ++V P+  +   + ++         ++ +++ GL    WP    ++    
Sbjct: 643 AELDAEVLPSDSVAPQGRRPEGVAVMTPARCAGQEWELVVVAGLERDRWPDLRLRDSLTR 702

Query: 666 RVMQSDL 672
             +  D 
Sbjct: 703 TGLLVDA 709


>gi|289450713|ref|YP_003474825.1| UvrD/REP helicase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185260|gb|ADC91685.1| UvrD/REP helicase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 849

 Score = 85.0 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 83/718 (11%), Positives = 191/718 (26%), Gaps = 106/718 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKK--STILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
           +S+     T +A QE+R   I++ G +        + +   +          L       
Sbjct: 89  SSILAITFTNKAAQEMRQRIIKLIGNRVQGMW---VGTFHAMFLRILRNHAELL------ 139

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                +   +A         +   + +L        P    + I  AKNL    D     
Sbjct: 140 --GFTKRFTVADTDDQL-KMIKACLDELEFNDKSFPPRQVLSMISKAKNLLQNPDDYRLS 196

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            K    ++                 +    + +  +L   +A          +R   EH 
Sbjct: 197 GKGNYFINR----------------VADVYRLYAAKLQSADAMDFDDILYYAVRLFTEHK 240

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                       I++     +  A  RL+  + +  N   V+   D       +      
Sbjct: 241 DVRYHYCQLFNYILVDEYQDTNGAQYRLIKLLTSGKNNLCVV--GDDDQSIYSFRGADIT 298

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +              +  L+      + +   +N +   +             
Sbjct: 299 NILNFEKDFPACE---------VIKLEQNYRSTESILGAANAIIAHN------------- 336

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALIT 393
               T+  +  +   +   + + L+   N+  EA  +A  +          N    A++ 
Sbjct: 337 ----TERKDKTLWTAKAGGNKIKLLNLANQDAEAKYVAAQIIDMRRADPTLNYSDFAILY 392

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
               L+R ++  L   GI   I   +          + + L  +    D ++ + ++  P
Sbjct: 393 RLNALSRSLEFALRDQGIEYRIYGSVRFFDRKEIKDVLAYLRLLANPYDGISFSRIINVP 452

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
             + G  +   +   N  E  ++   +      D        +                 
Sbjct: 453 --RRGIGDITQAAVLNLAETASITPLEVCRRAGDF-----PSLERAAYKLQTFAALMDEL 505

Query: 514 EEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
               + A      I   I    +  +    +       +D        + +V   EH  L
Sbjct: 506 AASLQNAKTFAMFIDGVINDTGLQAEIINQAKKTGEDPADRVANLQELVSDVVQFEHNPL 565

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
           P             +     E       +  E +D     +   +   + E +  + ++ 
Sbjct: 566 PP-----------DVVMLEAENDEVTTWSRSELLDAYLDRVALISGNDQTEDADAVKLMT 614

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L F  + L G+ EG++P   +              L+T      +    +    
Sbjct: 615 IHSAKGLEFANVFLIGMEEGIFPGFRS--------------LETENGVEEERRLAYVAVT 660

Query: 693 GTRHLIYTRSLRENN-----IPTIASRWLQRLL-VLGGTDFFDNLKKRGQCYLDWTRK 744
                ++   +RE          I SR++  +      T    +  +R   +      
Sbjct: 661 RAMRRLFITMVRERMLYGRTSHEIPSRFVAEIPTEFLETQRIADANERHAAFGRTAAA 718


>gi|291456202|ref|ZP_06595592.1| UvrD/REP helicase family protein [Bifidobacterium breve DSM 20213]
 gi|291381479|gb|EFE88997.1| UvrD/REP helicase family protein [Bifidobacterium breve DSM 20213]
          Length = 1311

 Score = 85.0 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 53/495 (10%), Positives = 133/495 (26%), Gaps = 34/495 (6%)

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSI 239
                 L  A      +      S        L+          +     +++     + 
Sbjct: 262 REVLLQLVEAYAQAKRQKNMAEFSDFTIAAYQLIERFPSIGERTRCRYSHVLLDEYQDTS 321

Query: 240 PATARLMSTVANHPNG--AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
              A L++ + +  N     V    D       W   +  +  +   +     H      
Sbjct: 322 TTQAALLAALFHVNNSERCAVNAVGDPFQSIYAWRGASPGAFRMFQRDF----HMPAESK 377

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                L + R + + +   +N++     + S+   P  +          + +P+  +   
Sbjct: 378 PF--PLSVTRRNSRIVLEAANDLT--LPLRSRPARPSSSLMREVDVSSLDPMPDAPEGTL 433

Query: 358 DVALIEADNEREEA-----ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
            V  +    +  +A      +     R +    +   A++   ++     +  L + G+ 
Sbjct: 434 GVLGLATAGQEIDAVVRFCKAAIARYRDAGAAQEAPVAVLFRSKSHMPEYQEVLEKAGLT 493

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
             +     L        + +LL+ +    D  A+  L+  P       +          +
Sbjct: 494 TFVVGYSALLERPEIRDVLALLHVVADHTDTGALMRLLATPRFGLSSDDLTALACAAEAQ 553

Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE------LAVLLVDH 526
            +  R        +        +              +    +             L  +
Sbjct: 554 NMEQRFRALVQAGVAPADTPRSQWGAVVREHRDQVANAVFLPDLLMQDNSSVRLDQLSAY 613

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ---------NVCLDEHRKLPNLWF 577
               +   V      +   G  SI+D  +  +  L           +   +HR  P+L  
Sbjct: 614 GRHAVEQAVEALRQVHDMVG-RSITDVIRAAIEALNLDIDTVLAGALRDPQHRVNPSLAR 672

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLES 636
                 +  + +   E           ++  +  L   E    K+  S   + ++   +S
Sbjct: 673 MPMDSIVDLVDTYTQEIAVEQTPTLRGFMAWVDHLATVEDEAAKLPGSPVDVELMTVHQS 732

Query: 637 RLLNFDTLILGGLNE 651
           + L +D + + GLN 
Sbjct: 733 KGLEWDAVAVVGLNA 747



 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 93/820 (11%), Positives = 210/820 (25%), Gaps = 75/820 (9%)

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS-TVANHP 253
            + E L +   ++ V    AL+       +       ++A  T +      L +       
Sbjct: 483  YQEVLEKAGLTTFVVGYSALLERPEIRDVLALLH--VVADHTDTGALMRLLATPRFGLSS 540

Query: 254  NGAIVLPGLDCHIPTAIW------NTITEKSTNITSSNTTYSTHP-QYSLAKLLDFLDIK 306
            +    L                    +    T  +        H  Q + A  L  L ++
Sbjct: 541  DDLTALACAAEAQNMEQRFRALVQAGVAPADTPRSQWGAVVREHRDQVANAVFLPDLLMQ 600

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPD-TSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                 RL  +S           ++            TD++   I  +      V      
Sbjct: 601  DNSSVRLDQLSAYGRHAVEQAVEALRQVHDMVGRSITDVIRAAIEALNLDIDTVLAGALR 660

Query: 366  NEREE-----AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID--ISAG 418
            + +       A     ++   +D   ++ A+                 +  ++       
Sbjct: 661  DPQHRVNPSLARMPMDSIVDLVDTYTQEIAV------EQTPTLRGFMAWVDHLATVEDEA 714

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL-------AKFGFPEKYLSRAKNAL 471
              L  +     L ++  +     D +A+  L             K    + +    +   
Sbjct: 715  AKLPGSPVDVELMTVHQSKGLEWDAVAVVGLNAGGFPSNQGDHLKVVLDDNHPGGTEQGQ 774

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                         +    ++ +   A        PH      +   +    L D  L   
Sbjct: 775  WTAPEYHESADSWLTSPVAVPVPVRADAGILPRFPHDADVHGD-PIDSLRNLDDVELIDD 833

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
                + +   +        S +   +    + +  DE R             L +     
Sbjct: 834  EVFGSMREFGDGVEEVDPQSWYLTQSEEYGRRLHADERRLAYVALTRARNDALLTYCRYT 893

Query: 592  IETGSC--------IKANAIEWIDIITRLIDGETVKPKI----EKSSTLFILGTLESRLL 639
             E+             A+   +   +   + G     +     E   +   L + +   +
Sbjct: 894  GESSRDCTNVPKGSRAASPSNFWLEVHDALHGHDHAIEAQAYVEGLGSEVALVSPQGDPI 953

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEMANGTRHL 697
            +     + G N   +      + + + + Q+     L          A            
Sbjct: 954  DPPEGFIVGENAEQYCDAVVGDAWRTPLEQTSGRNALPWPASLGEDTAEHLTRGLALVRN 1013

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
                     +     +  L +   L   D  D+L           R +    ++      
Sbjct: 1014 AINGKRNAKDDGHNPAGPLLQRAQLLVDD--DDLMTGTLEGAALDRAVKAKAQRILAAGR 1071

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
            +    L+A+    S  E           Y R +++              + GT FH+   
Sbjct: 1072 QNVTSLQARVGGMSQQEE--------RFYWRSVIRPIPR----VSSPAAEAGTRFHDWAE 1119

Query: 818  ELIKKR-INKNTPEINHLMKQIIDSH--FEKENLPPHIDIIWRHLF----HKISHSFLEH 870
              I     ++    ++    +II +     + +L   ++ I +         +       
Sbjct: 1120 RFINAGKPDEAASSVDSSAAEIITTGNGVSRSDLLADLNAIDQQSVPVCDRNLMMWQHRL 1179

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL------LKSGFVDITDYKTGDNP 924
                 +    ++      + +  +GI + G  D + L        S    + D+KTG  P
Sbjct: 1180 ASSSWAQRTPVWAERSIAVDVPEVGI-VNGKLDAVFLGGINPADTSKRYTVVDWKTGHRP 1238

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
             K    +    QL +    L A    ++D    A L+Y+ 
Sbjct: 1239 TKPDDVEHKLAQLDMYRLLLAAVEGVELDSID-ATLYYVS 1277


>gi|332977298|gb|EGK14087.1| ATP-dependent DNA helicase PcrA [Desmospora sp. 8437]
          Length = 744

 Score = 85.0 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 68/707 (9%), Positives = 170/707 (24%), Gaps = 125/707 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            + +   T+ A+QE++   ++ TG  + I   I +   +         +    +      
Sbjct: 100 RMMVVTFTRAAVQEMKQRLLKQTGGSAGI--TIGTFHSIFLRLLRNSGVP---IPRLAGE 154

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            ++   +  L++                +      +  + I             +     
Sbjct: 155 REQTGLIRELLIGSGR-----------PADEEAVSNTLSQIGF----------CKGNLML 193

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-EHLMK 224
            E +   + +             +   + +   + +          +        +H  +
Sbjct: 194 PERMKLKQEKNIA---------FRELFQTYQRVMEQRGIWDYDDILLRFHDLLRGDHPFQ 244

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                I++             +  +   P G  +    D       +             
Sbjct: 245 RRFVHILVDEFQDINRVQMETIRLL--LPEGGTLFAVGDDDQSIYGFRGSDPGYMLDLPR 302

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                                              +                    N   
Sbjct: 303 TLPN--------------------------CTRIVLTTNHRSTEPIIRVGQQLIAHNRLR 336

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
              ++    K   +    E  +E +EA  I   LR        ++A++      AR +  
Sbjct: 337 QPKRVEGTGKAGEEPRWWEPADEEDEAGQILDMLRD-----GVETAVLYRTSTQARAIID 391

Query: 405 ELTRFGINIDISAGIPLSTTL-HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
            L R  +   +S G          + + S L      +D  A+  +V  P       E  
Sbjct: 392 ALVRADLPFAVSPGDAAFYRRWQVTDVLSYLKLANHPDDLDALVRVVNRPKRYLFGEE-- 449

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                                       + +   + +             +  +      
Sbjct: 450 ---------------------------WLDELQRSSRERNLPLLLCLPKLKGLESYQTKY 482

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
           ++ ++Q +T L                           + +  D            + +T
Sbjct: 483 LERMVQQVTALRGCSPA--------------AAVKRVRREIGYDTFLSAMAKDLGHDFQT 528

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
           L+    ++    +       +  D +  +   +    +  +S  + ++   +S+ L FD 
Sbjct: 529 LAEPVDELAMAAAA----HGKIEDFLDHIEQVDRKVREQPESPRVRLMTLHKSKGLEFDR 584

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
           ++L GL+  V P          R +Q    +K+      +      +    R LI + S 
Sbjct: 585 VVLIGLHGMVLPHR--------RSLQVPDKMKSRAWEEERRLLYVGLTRARRELILSVSR 636

Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
                    S +L+ +   G  +                 +L Y  +
Sbjct: 637 TRQGKRVGPSPFLREMGYTGEEEGPVAQPASRSRPDPEQPQLRYAGE 683


>gi|94496379|ref|ZP_01302956.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
 gi|94424125|gb|EAT09149.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
          Length = 1144

 Score = 85.0 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 95/879 (10%), Positives = 212/879 (24%), Gaps = 89/879 (10%)

Query: 95   LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA-KNLA 153
                    +    R   L  L   W     DII       P+      A  +      L 
Sbjct: 271  DRIAAWRALDPAGRAAGLIELHRAWAKADGDIIDARGWVPPIDGYGEMAARLHSRCGELI 330

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             +   +  +              Y   +  A                +L A +    +  
Sbjct: 331  AL--KLRADYAALLAQALHAGRAYAREYATAKRLAGAV------DFDDLIARTAALLEQP 382

Query: 214  LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH---------PNGAIVLPGLDC 264
             +     + +      I++  +  +  A  R++ T+A                V    D 
Sbjct: 383  GIAEWIRYKLDQRIDHILVDEAQDTNAAQWRIVRTLAEEFFSGAGAKGDKVRTVFTVGDF 442

Query: 265  HIPTAIWNTITE---KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                  +   +     +  +            +    L          +  +      + 
Sbjct: 443  KQAIFGFQGTSPQNFAAAQLLFQRDAMDAGHDFHSLSLDRSFRSTPAVLDVVDRTIATLR 502

Query: 322  GRSMVISKSFLPPDTSDMRNTD--ILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
               + +    +  D+++    +  + +  + N+ +          D ER  A  IA  ++
Sbjct: 503  AERLGLEAGEVHHDSANRHPGEVTLWKPVVANMTEDADGEEDWADDQERVLAQRIARQIK 562

Query: 380  MSLD------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
              +D                   L+     LAR +   L    + +     + L+  L  
Sbjct: 563  QWIDNGVMLESRGRPVRAGDIMILVRRRSELARLIVARLYEEQVAVAGIDRLRLNAPLAV 622

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
              L + L    +  D + +A+L+  PL  +   E           L          + + 
Sbjct: 623  RDLLAALRFAVQPEDELNLASLLVSPLIGWTQDELMNRLVGRRTGLWRHLNQTLDDEALG 682

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                + + +A    +T   + ++ +S        L+     +   P+        +   +
Sbjct: 683  P---LRNLLAVADFSTPYRYLEAIVSGPMDGRRKLIARLGAEAADPIEELLNAALAFEQD 739

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
               S                   +    WF+     +    +   +    +  +  + + 
Sbjct: 740  DHPS------------------LQRFIDWFDRGEVEIVRDAAGQGDMLRLLTVHGAKGLQ 781

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                ++    + P                     D L   GL      K   + P     
Sbjct: 782  APIVILADACLDPDA---------------GNRADMLEWNGLPILPPRKAERQGPI--GD 824

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
            +  +      E++          A     +  +   R        S +      +     
Sbjct: 825  VAEEAAQIEREEHWRLLYVALTRAEEKLVVAGSLGPRAKGEVKPESWFAAVEGAMISLGA 884

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                         W       +K    +        +        +  +     P A  A
Sbjct: 885  QWEADPLWGAARRWRGAEQLPSKDAAVEDAPADLATDTPSWLRQAAPAEARPPRPLAPSA 944

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
            +    + + P         ++G L H +   L     N+     +  + Q          
Sbjct: 945  QVEDDVPYPPPTPAMRAAAEKGRLLHALFERLPGLGANQRASAADRWLAQQG-------- 996

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL 907
                ID   R      +   ++  +             P    +      + G  DR+ +
Sbjct: 997  ---LIDAYERQQLIDQALRVIDAPDFANLFGPGALAEAPIAAVVGEA--VIAGTVDRLCV 1051

Query: 908  LKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAAL 944
                 V   D+KTG                Q++  AAAL
Sbjct: 1052 GAD-RVQFVDFKTGRVAPSTLADVPTSHLCQMAAYAAAL 1089


>gi|328552685|gb|AEB23177.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus
            amyloliquefaciens TA208]
          Length = 1234

 Score = 85.0 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 113/890 (12%), Positives = 239/890 (26%), Gaps = 130/890 (14%)

Query: 167  EDLHALKNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            E L  L       +     +           Y    L         G +   + +EA   
Sbjct: 343  ETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAR---DEEGRR---VPSEAAVY 396

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +     +++     +      ++  V + +     +    D       +          
Sbjct: 397  YQDQFHEVLVDEYQDTNLVQESILQLVKSGNEEAGNLFMVGDVKQSIYRFRLAEPLLFLG 456

Query: 282  TSSNTT--YSTHPQ-----YSLAKLLDFLDIKREDVKRL-GNVSNEMYGRSMVISKSFLP 333
                 T       Q      +     D LD      K+L G    E+        K    
Sbjct: 457  KYKRFTEDGEGAGQKIDLNQNFRSRSDILDSTNFLFKQLMGGKIGEVDYDEQAALKLGAS 516

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM------------- 380
               +D   T++L     +      D    E  +   EA +IA  +R              
Sbjct: 517  YPPNDAAKTELLLIDSADDADSPEDAEDFETVHW--EAKAIAAEIRKLVSSPFKVYDGKT 574

Query: 381  --SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                +   +   ++      A ++  EL   GI +  +        +  +   S+L  I 
Sbjct: 575  KTHRNIQYRDIVILLRSMPWAPQLMEELKNQGIPVYANLTSGYFEAVEVAAALSVLKVID 634

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRA-------KNALELVALRGNKNSYDIMDLKSL 491
                 + +A++++ P+      E  L R          AL+     G+++      L++ 
Sbjct: 635  NPYQDIPLASVLRSPIVGCDENELALIRLEKKKAPFYEALKAYIANGDRHDDLYQKLRTF 694

Query: 492  VL----DRIATQKNNTHVPHWQSRLSEEDKELAVLLV----DHILQCITPLVTYKTNKNS 543
                   R  +  ++     W+        + A  +           +           +
Sbjct: 695  YDSLQKWRSFSTNHSVSELIWEVYRDTGYFDYAGGMPGGKQRQANLRVLYDRARSYEATA 754

Query: 544  TCGNLSISDWTKLTVTCLQNVCLD----EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              G      + +       ++       E   +  L      K L          G    
Sbjct: 755  FRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFTAGLGRSFN 814

Query: 600  ANAIEWIDIITRLIDGET------VKPKIEKSSTLFILGTLESRLL----NFDTLILGGL 649
               +    ++ + +   T      ++        + +   +   LL        + L   
Sbjct: 815  MMDLNKSYLLDKELGFGTKYIHPELRISYPTLPLVAMKKKMRRELLSEELRVLYVALTRA 874

Query: 650  NEG------VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE--MANGTRHLIYTR 701
             E          +      + ++  ++D  L   ++Y   +  DF          +   R
Sbjct: 875  KEKLFLVGSCKNREKQLAKWQAQADRADWLLSEFDRYQASSYLDFIGPALIRHSDMEAHR 934

Query: 702  S---LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP------ 752
            +   L   +I    +R+  R+L        D+ ++R +      + + +    P      
Sbjct: 935  APGLLAPEDIAHDPARFHIRMLQQS-ELLEDSPEERAEEKSKRLKAIQHGEPIPDSFSFD 993

Query: 753  -----HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL--------DFIPHF 799
                   +   P+  L A     S SE+K+          R ++K               
Sbjct: 994  DQARRLLEWEYPYRKLTAIRTKQSVSELKRKQEYEDEYSGRSLIKPSGDTLLYKRPGFMM 1053

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
            KK     ++GT  H ++  +    +     E    ++ + +     E     ID      
Sbjct: 1054 KKGLTAAEKGTAMHTVMQHIPLTHV-PTAEEAERTVRMLYEKELLTEEQQDAID------ 1106

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGFADRIDLL 908
              ++   F     K      +I   +P  MA+               + + G  D +   
Sbjct: 1107 IDEVIQFFGTEIGKDLVGALRIDREVPFSMALPASEVYKDAETAGEPLLVQGIIDCLYET 1166

Query: 909  KSGFVDITDYKT------------GDNPKKETAQKLIDPQLSLEAAALKA 946
              G + + DYKT            G  P     QK  + Q+ L   A++ 
Sbjct: 1167 ADG-LYLLDYKTDRIEGKFRNGFEGAAP---ILQKRYETQIELYTKAVEQ 1212


>gi|78049804|ref|YP_365979.1| DNA-dependent helicase II [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325926001|ref|ZP_08187367.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118]
 gi|78038234|emb|CAJ25979.1| DNA helicase II [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325543597|gb|EGD15014.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118]
          Length = 723

 Score = 85.0 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 64/710 (9%), Positives = 164/710 (23%), Gaps = 120/710 (16%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E+R         G +      I +   +           +        + +
Sbjct: 55  VTFTNKAAGEMRHRTDLQLRNGSRGMW---IGTFHGLAHRLLRLHWQDARLPEGFQVMDS 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R++                                       I+  + E ++
Sbjct: 112 DDQLRLVKRVVQALELDESKYPPKQMSWW---------------------INEQKDEGRR 150

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +      +    W             + ER             +       +     
Sbjct: 151 PQHIQ----PEPNDDWTEVRRQ---VYAAYQERCDRSGLLDFAELLLRAHELLRDTPALL 203

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A       V    D       W     ++  
Sbjct: 204 AHYRARFREILVDEFQDTNAIQYAFVRVLAGESGN--VFVVGDDDQAIYGWRGAKVENVQ 261

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G  +  +       +      +     
Sbjct: 262 RFLKDFP--------------------------GAQTVRLEQNYRSSANILGAANAVIAH 295

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA  +    R  + +     + A++      
Sbjct: 296 NPDRIGKQLWTDSGDGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAQ 355

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L    +   +  G+            + L  +   +D  A    V  P     
Sbjct: 356 SRALEEALISEQLPYRVYGGMRFFERAEIKDALAYLRLLTNRSDDAAFERAVNTP----- 410

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        +    LD +      + +  W++ +    + 
Sbjct: 411 --------------------------TRGIGDRTLDEVRRLARASALSLWEAAMLCTQQN 444

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                  + L     L+     +          D   +     ++   +    L +    
Sbjct: 445 TLAARARNALASFLSLIGQLHAETGQMELAERIDHVLMRSGLREHWAKESRGGLDSESRT 504

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E    L S+ S+             E +  +                  + ++    ++ 
Sbjct: 505 ENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMTLHSAKG 564

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + L GL +G++P   +              L+ + +   +    +      R  L
Sbjct: 565 LEFPIVFLVGLEDGLFPSARS--------------LEESGRLEEERRLAYVGITRARQKL 610

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
           +   +        +   + SR+L+ +      +    ++      L   R
Sbjct: 611 VLCYAESRRIHGQDNYNVPSRFLREIPRDLLNEVRPKVQVSRTASLGAAR 660


>gi|218289369|ref|ZP_03493603.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240475|gb|EED07656.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 757

 Score = 85.0 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 63/582 (10%), Positives = 139/582 (23%), Gaps = 78/582 (13%)

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATA 243
                 +  RL E  A       +  +    +        +     I +     +  A  
Sbjct: 176 GDVYLAYERRLRENQALDFDDLLVKTVELFRKVPDVLAYYQHRFSHIHVDEYQDTNHAQY 235

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            L+  +A       V+   D       W     ++            +P   + +L    
Sbjct: 236 VLVKLLAERRRNLCVV--GDSDQSIYGWRGADIRNILEF-----QRDYPDARVIRL---- 284

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                                    +     +     N   LE  +   +       L  
Sbjct: 285 -----------------EQNYRSTGRILRIANQVIQHNQMRLEKNLWTDRGEGEKAKLFV 327

Query: 364 ADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
           A +ER EA  +A  +   + +    +  A++      +R ++    + GI   I  G+  
Sbjct: 328 APDERVEADLVADEIARMVADGRRYRDVAILYRTNAQSRVLEEAFLQRGIPYRIYGGLRF 387

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                   + + L  I   ND ++   +V  P    G                       
Sbjct: 388 YERREVKDVIAYLRLIANPNDDVSFLRVVNVPKRGIGDTTLEKLADYAR----------- 436

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                 L    L       +       QS +              +      L+     +
Sbjct: 437 -QRGTSLFEAALHAAEAGISKKAASALQSFVELIQTLQLQRAFLPLTDLTDELLERSGYR 495

Query: 542 NSTCGNLSISD--WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
            +     S+      +     L      +   +P        + L+              
Sbjct: 496 EALRAERSLEAENRLENLDEFLSLTREFDENGVPEGEMGALEQFLTH------------- 542

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                 + +++          + E    + ++    ++ L F  + L GL EGV+P   A
Sbjct: 543 ------VALVSDADLPGGRPGRREDLDEVSMMTLHAAKGLEFPVVFLVGLEEGVFPHRRA 596

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            +       +  L      + + +      +      +++             SR+L  +
Sbjct: 597 LDGGEELEEERRLCYVGITRAMER----LYLTTCRSRMLF-----GERRSFTPSRFLSEM 647

Query: 720 LVLGGTDFFDNLKKRGQ-CYLDWTRKLDYTTKQPHYKRPKPF 760
                    +     G+  + D    +             P 
Sbjct: 648 PAADIERVGEEDAAFGRGGWRDSHAGVRAPAHVVADTASAPR 689


>gi|254483191|ref|ZP_05096424.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036562|gb|EEB77236.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 717

 Score = 85.0 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 68/740 (9%), Positives = 181/740 (24%), Gaps = 129/740 (17%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +    R +  +P     +     T +A +E+R+   E+    S  +  + +   +
Sbjct: 38  VLVHRIAWLIRAEEFSPWS---ILAVTFTNKAAKEMRNRIEEMLQIPSHGM-WVGTFHGL 93

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                 A       L      +    +L RL+     ++                  P  
Sbjct: 94  AHRLLKAH-WKEAGLPQNFQILDSDDQL-RLVKRVCREMELDESRW----------PPKQ 141

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
           A+W        I+  + E  +      +      ++            + +         
Sbjct: 142 AMW-------YINSQKDEGLRS---QHIDAPHGDLYAQTMLQ----VYRAYEAACDRTGM 187

Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  +       +        +G    I++     +       +  +A       V+
Sbjct: 188 VDFAELLLRAHELWLKSPEVLAHYQGRFRQILVDEFQDTNTIQYAWLRVLAG--KDIPVI 245

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       W     ++      +                            G  +  
Sbjct: 246 AVGDDDQSIYGWRGAKIENIQRFGDDFK--------------------------GTRTVR 279

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
           +              +     N   L  ++    +    + L    NE +EA  +   + 
Sbjct: 280 LEQNYRSTQTILQAANGVIAFNFGRLGKELWTSGEQGEPINLYAGFNEHDEARFVVEQIE 339

Query: 380 MSLDENKKKS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
             +     ++  A++      +R ++  L R  I   I  G      +      + L  +
Sbjct: 340 HWIANGNDRASVAILYRSNAQSRVLEEGLIRGAIPYRIYGGQRFYERMEIRNALAYLRLL 399

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
               D  A+  ++  P                                +  K+L + R  
Sbjct: 400 QSRGDDAAVERVINTP-----------------------------PRGIGSKTLDVVRSC 430

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
            +     +      +  E    A  L       +          +S   +L++ +  + +
Sbjct: 431 ARARELSLWQSIEAVITEKLLPARAL-----SALEGFTVLINELDSGTDDLTLEELVEHS 485

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS----CIKANAIEWIDIITRLI 613
           +     +      +       E+G+       +++                    +    
Sbjct: 486 IEHAGLI------EYHQKEKGEKGQARVENLEELVSAAKQFVKDEAEETSPLQQFLDNAA 539

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                    E   ++ ++    ++ L F  + L G+ E ++P                ++
Sbjct: 540 LDAGDAQADEHEDSVQLMTLHSAKGLEFPLVFLVGMEENLFPH--------------RMS 585

Query: 674 LKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTI----ASRWLQRLLVLGGTD-F 727
           ++   +   +    +         L  T +       +      SR+++ +      +  
Sbjct: 586 IEEPGRLEEERRLCYVGITRAMEQLTITYAESRRLHGSESFNAPSRFIREIPAELLQEVR 645

Query: 728 FDNLKKRGQCYLDWTRKLDY 747
            +N   R    L      + 
Sbjct: 646 INNTVSRPVSALSQAAVPET 665


>gi|332798608|ref|YP_004460107.1| ATP-dependent DNA helicase PcrA [Tepidanaerobacter sp. Re1]
 gi|332696343|gb|AEE90800.1| ATP-dependent DNA helicase PcrA [Tepidanaerobacter sp. Re1]
          Length = 723

 Score = 85.0 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 85/735 (11%), Positives = 199/735 (27%), Gaps = 122/735 (16%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A +E++    +       +LP I    D+    F +  +    ++       R 
Sbjct: 57  ITFTNKAAREMKDRIKQ-------LLPEI---EDMFVSTFHSACVRFLRMDIDKLGYNRN 106

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
             +               + L  +   +L I        A  + + I   +      E  
Sbjct: 107 FIIFD---------TQDQQVLMKDCLKTLNIDDKKFAPTA--VLNYIGRAKDRLLVPEKC 155

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----K 224
             L N K           +      + +RL E NA       +  +             +
Sbjct: 156 --LDNAKDVRE-----KTMAQIYALYQKRLKENNALDFDDIIMKTVELFKTFPSVLSYYQ 208

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                I++     +  A   L+  +A       V+   D       +     ++      
Sbjct: 209 NRFPYILVDEYQDTNIAQYELIRMMAAKHRNLCVV--GDDDQSIYSFRGADIRNILEFEK 266

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
           +   +T              + R +       +       ++         T    N   
Sbjct: 267 DFPDAT--------------VIRLEQNYRSTQTILNAANEVIDHNFGRKKKTLWTNNGQG 312

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARR 401
                         + L+  ++E +EA  IA  +   +          A++      +R 
Sbjct: 313 ------------DKITLVTLEDEHQEAYFIAREINELVFREGINYGDVAVLYRTNAQSRA 360

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           ++  + + GI   I  G+          + + +  I   +D +++  ++  P    G   
Sbjct: 361 LEEAMVKTGIPYKIIGGLRFYQRKEIKDILAYVRVIANPSDDVSLMRIINVPRRGIGDAT 420

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
               +A       ++     + D + L   + +++   +                     
Sbjct: 421 VNKLKAAAEEGNKSVFDIITNIDQLSLSPSLKNKLQKFRL-------------------- 460

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                       +  +     +      ++   + T    + V  +    L  +   +E 
Sbjct: 461 -----------MMEDFIRMSKTIAIPDLMNHILEETGYMDELVNENTTEALSRIENLQEM 509

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
              +  F +                D +T L     V    E    + ++    ++ L F
Sbjct: 510 IGAAKEFEQRSSDLG--------LEDFLTELALVSDVDDMQEMEQAVVLMTLHSAKGLEF 561

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYT 700
             + L G++EG++P + +              L    +   +    +      R  L  T
Sbjct: 562 PIVFLSGMDEGIFPHSRS--------------LLDDNQLEEERRLCYVGITRARKKLYLT 607

Query: 701 RSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
           R+ +     N    ++SR+L  +      +   + K         T+ L   T+ P    
Sbjct: 608 RAWQRSLYGNTSYYMSSRFLNEISPEYLIESSGDTKNNINTRSSETKVLKDNTESPPENN 667

Query: 757 PKPFPPLEAQPRTYS 771
            +  P        +S
Sbjct: 668 EQIGPIRPGDHIKHS 682


>gi|154509554|ref|ZP_02045196.1| hypothetical protein ACTODO_02086 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799188|gb|EDN81608.1| hypothetical protein ACTODO_02086 [Actinomyces odontolyticus ATCC
           17982]
          Length = 1142

 Score = 85.0 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 67/647 (10%), Positives = 165/647 (25%), Gaps = 55/647 (8%)

Query: 36  YDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----------SLGDVV 85
                 L  +S+     T++A  EL     E     S  +P ++          +     
Sbjct: 55  LANHPDLSPSSILGLTFTRKAAGELGERLRERIRLLSREMPQLRERLDEDPVSLTYNSFA 114

Query: 86  EEKFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
           E   +   +          +S    L  + +++  W   L + +  L     +       
Sbjct: 115 ERIVSEHGMRIGIDPDFSMLSEAGALDLMLQIVEAWPTDLDEDLTPLGAVGQILHLAGEF 174

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                    A    +    E +          +          FL   ++ + +R  ++ 
Sbjct: 175 AEHGYTVESAREALVGFGRELEQVRETNDDARRLLRANRRRIAFLDPIAE-YQKRKRDMG 233

Query: 204 ASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                   +   R   E        +     +++     +      ++S +        V
Sbjct: 234 VLDFSDQLVLATRIVREAPAVRESLREEFRAVLLDEFQDTSVIQMDMLSMLFG---DHAV 290

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               D +     W   +  S              +     L                   
Sbjct: 291 TAVGDPNQAIYGWRGASASSLESFLDRFQTGEAQESQTLTLSTAWR--------NDEAIL 342

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI---A 375
           +   R     +                   +         V +  A +      ++   A
Sbjct: 343 DAANRVAAPLREVAAYQEGKEHLKAQSPVLVARDGAGPGHVDVAYAPDYEAALGAVVDFA 402

Query: 376 IALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            ++R    E    +  A++   R     V   L   GI  +I     L        + + 
Sbjct: 403 RSVRSHASEGGKRRTVAVLCRRRKDFAYVDAALRDAGIPTEIVGLGGLLDQPAVQDVRAA 462

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L   +          +   P          L            R    +      ++++L
Sbjct: 463 LELAYD---------VEASPWLARLLVGIDLGATDLMALGDWSRVLARTEGTNPHQAVLL 513

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
           D + +          +  +SEE      LL + + Q    +              S+++ 
Sbjct: 514 DAVDSPPEPGWAAEGRPAISEEAVRRVRLLGERLRQVREGVG------------RSVTEQ 561

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +  +  +  +       L         + ++   +   +T      + + ++ +     
Sbjct: 562 VERAILIMGTLDDVIADPLSMGGRAALDEFIAVTAAYEKDTPGASLGSFLAYLRMADERE 621

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           DG            + I+    S+ L +D +++ GL++G++P +  +
Sbjct: 622 DGLEAPLGEPDPRAVQIMTVHASKGLEWDCVVVFGLSDGIFPSHDKR 668



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 69/273 (25%), Gaps = 26/273 (9%)

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP------FP 761
                 SR               +L +    Y    +  D    +      +        P
Sbjct: 846  EEPGPSRQRVAAAAQAVEAQIRDLAQDQDVYEALAQLGDDPLVRDTVALIEEYHLGLETP 905

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
             ++        + +  L+ D          +    P   +    +  GT+FH  +   + 
Sbjct: 906  VVDLWAERVPATSVSALLQDADEF-----ARDMRRPMPARPSSFSALGTVFHAWVERELH 960

Query: 822  KRINKNTPEI-----NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
                    EI         +    +  +       +    R    ++  +F        S
Sbjct: 961  LASADPASEITTGNEVSAGEDATLAGGDDAADEALLTDGERERLERLRANFRAFVANELS 1020

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG---FVDITDYKTGDNPKKE---TAQ 930
                + +     + +   G+ + G  D +     G      + D+K+G            
Sbjct: 1021 DYRAVAIEEAFSVQV--GGVSVQGRIDAVFERVRGDGPRYLVVDWKSGRPVSAATKPDKV 1078

Query: 931  KLIDPQLSLE--AAALKAGSFSQIDCRKVANLF 961
                 QL L   A A + G  +      VA L 
Sbjct: 1079 AYFVTQLRLYQRAWAARMGVDASKVGAMVAFLA 1111


>gi|325922510|ref|ZP_08184273.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Xanthomonas
           gardneri ATCC 19865]
 gi|325547018|gb|EGD18109.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Xanthomonas
           gardneri ATCC 19865]
          Length = 1132

 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 110/960 (11%), Positives = 235/960 (24%), Gaps = 126/960 (13%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
            E  R  P  PLL   V + +P     + L+S      G  + +     + G+ V     
Sbjct: 24  QELRRPVPEQPLLQPEV-VLIPQVAMRRWLQSTLAAEHGVAANL--EFLTPGEFVARAL- 79

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
                  NL P   ++       RL    +  L      L P +             LA 
Sbjct: 80  -----ECNLGPADDDLDMATTQWRLYDALQADLGSDAA-LAPLAGYLSDGDALKPWALAG 133

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            L ++ +  +   + W  L                  +                      
Sbjct: 134 ELGNVFEKYQAWRRDW-LLRWEGGADPDDPQARLWRSIA------------SGRQYRARR 180

Query: 211 QIALMRAEAEHLMKGT---KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
               +   A             +         P   R+++T A        LP       
Sbjct: 181 IGQYLDRFARADGPLPQGLPKRLFAFAILNISPDVLRVLATQARVGTLHFYLPTPTQGYW 240

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
             +      +  +            Q     LL        D   L      ++  + + 
Sbjct: 241 GDLQTLWQRRREDGAVQLFAE----QVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEIA 296

Query: 328 SKSFLPPDTSDMRNTDILENKI--------------------PNIQKCFSDVALIEADNE 367
           + +              L + +                    P +      + +      
Sbjct: 297 AYADPLESGRRALAHGGLGDSLLRRMQSDLFHRRAPVVPALLPAVNLHDPSLQVHACHTR 356

Query: 368 REEAISIAIALRMSLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDI 415
             E   +   LR  LD+         ++ A+++ + +        +         +   +
Sbjct: 357 LRELQVLHDQLRALLDDARFDPPLQPREIAVLSPNIDPYVPYMDAVFGSHGNDDALPYAL 416

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG--FPEKYLSRAKNALEL 473
           +   PL++   + +  +LL           I  L+            E  L R +  L  
Sbjct: 417 ADASPLASEPLAEVFLTLLGLPIARFGLHEILDLLASAPIAEAAGLDEAGLERLRGWLHA 476

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
              R   ++      ++   D    +     +    +  +++D E            +  
Sbjct: 477 AGARWGLDAAHRRQHQAPSDDAYTWRFALDRLLLGHASGADDDIEGVAPWPQLEGSALAA 536

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP----NLWFEEEGKTLSSLFS 589
           L T          + S+    K  V   + +       +P        +     L +L  
Sbjct: 537 LDTLLKLLRVLERHQSLLAEAKTPVEWRERLLGLLEELIPTTPSAPRAQRALDRLRTLIY 596

Query: 590 KIIETGSCIKANAIEWIDIITRLID---GETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
           +        +       +++        GE+       +  +     +  RLL F  + L
Sbjct: 597 QFARDAVRAEYAGKVPAEVVRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRAICL 656

Query: 647 GGLNEGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
            G+N+G +P+             L    +   +  T E         F  A    +L Y 
Sbjct: 657 LGMNDGDFPRRDPAAGLNRLTAELGTERRRHGDRSTREDDRFLFLQLFASAQEVFYLSYL 716

Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFD----------------------------NLK 732
            +   +      S  +  LL        D                               
Sbjct: 717 GADARDGSAREPSVLVSELLASAAQYHADPKAIDTLVVRHPLQPFAAAAFGAPGDHGADP 776

Query: 733 KRGQCYLDWTRKLD----YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
           +R      W   +D           +          A P + S  E+++L  DP   + R
Sbjct: 777 RRFSYRRQWRPAVDSLVGQRQPLAPWVAAALPADDIAVPSSVSIDELRRLFADPAGQFLR 836

Query: 789 RILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
             L +       +D D        RG   + +   +    +  +T  +   ++       
Sbjct: 837 HRLGMRLPDPAGEDSDLEPLLAPTRGLDQYGLQQHVFDAALAGDTDRLYERLRA---RAL 893

Query: 844 EKENLPPHIDIIWR-HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                     +  R       + +F +   +  +   +        + ++   + + G  
Sbjct: 894 LPSGPLGRRQLDERVAQLRPYAEAFRQWRGEAPAESRR--------LQVQIGDVEVHGRV 945


>gi|294341370|emb|CAZ89787.1| putative exodeoxyribonuclease V, gamma subunit recC [Thiomonas sp.
           3As]
          Length = 1173

 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 105/936 (11%), Positives = 218/936 (23%), Gaps = 113/936 (12%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST----------- 73
           LL   L+E     PL P  L    I V +  A + L+       G  +            
Sbjct: 19  LLRDALLEWLAQQPLAP--LEEEVILVQSNGAAEWLKMALAAQGGICAATRVELPGRFLW 76

Query: 74  -----ILPIIKSLGD-------VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
                +L    +          +              L+P     +     A     +  
Sbjct: 77  RTYRQVLGRAATPSQSPLDKPLLTWRLMRLLGAPRAELSPARPPWESRKLGAA--QRFLE 134

Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED---------LHAL 172
                     P             + LA+ LAD+ D  +     W D         + AL
Sbjct: 135 GGTLDADVCAPLLQYLQGQDLLRRLQLAQRLADLYDQYQIYRDDWLDAWAQGRDVLIDAL 194

Query: 173 KNEKYGMWWLLAADFL-KIASKYWTERLVELNASSPVGYQIALM---RAEAEHLMKGTKG 228
                         +L +      +E   +   +      +  +    + A+        
Sbjct: 195 GRATPLPEDQRWQAWLWRRVLAELSETERQSTRAQVQRAMLQALHTAESAADPTRPALPR 254

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            +++ G++         +  ++ +    I LP    +    I                  
Sbjct: 255 RVVLFGASHLPAVVLDALVALSRYVQVLIALPNPCRYHWADIIEGRELLRAAPARRPLRA 314

Query: 289 STHPQYSL-------AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL--------- 332
               Q SL         LL     +  D  R  +  +E    +                 
Sbjct: 315 GDLAQVSLEAMHAHAHPLLAAWGRQGRDFMRQLDAFDEQANAADRPGLPRHDLFDDAPGD 374

Query: 333 ----PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--- 385
                   +      + E+    I      V      + + E   +   L   L +    
Sbjct: 375 TLLEQVQAAIRDLLPLPEHPRKPISAADRSVVFHIGHSAQREVEILHDQLLHLLAQPSGE 434

Query: 386 ----KKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLL 434
                +   ++T D          +           I  DI+     +T      L  LL
Sbjct: 435 RPLRPRDIVVMTPDIAPFAPAIRAVFGQYPPGDARFIPFDIADLSARATEPLLLALDWLL 494

Query: 435 NAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSY-------DI 485
               +      I+ L+  P    +FG   +   R    +    +R   +           
Sbjct: 495 RLPQERILASDISALLDVPAIARRFGLRPEDRPRLTQWIAGAGVRWGLDVDHRAHLGLGA 554

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              ++     +                +    +    L   ++  +  L+        T 
Sbjct: 555 CGEQNSWRFGLRRMLLGYAGAGEDGFENIVPFDEIGGLDAALVGPLADLLDVLQAWWRTA 614

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
              +           L +                    LS+                   
Sbjct: 615 LQNATPGQWAQHARDLLDAISLPQDLRERETRARLDDALSTWLDHCAAARFDEAVPLQVL 674

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            +     +D      +      +     +  R + F+ + L G+NEG +P+ + ++ F  
Sbjct: 675 RESWLSGLDEAAGGGRFLAGG-VTFCTLMPLRAIPFEVVCLLGMNEGDYPRRSPRSDFDL 733

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVL 722
                        +         E     R  L  + + R   +N     S  + +L   
Sbjct: 734 LHQPGQYRPGDRARREDDRYLMLEALLSARRMLYVSWAGRSPRDNTEQPPSVLVAQLRDY 793

Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP----------------------- 759
               +    ++           L   +++                               
Sbjct: 794 LAAGWQGEGQRDLLAQRTTVHPLQPFSRRYFEGDAALFTYAREWRQAHGGVAENGTGNGN 853

Query: 760 -FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL--DFIPHFKKDPDRTDRGTLFHNII 816
              P E      S  ++ + + +P   + R  L +  D +     D      G   H+++
Sbjct: 854 GPMPFEPLTEPLSLQQLARFLKNPVKAFFRTRLDVVFDELQTQDDDEVFALDGLDRHSLL 913

Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
           + LI          I   + + +        LP   
Sbjct: 914 SHLIDDPQAAVDEGIEAAVARRVRQLQGSGALPLRA 949


>gi|284029231|ref|YP_003379162.1| ATP-dependent DNA helicase PcrA [Kribbella flavida DSM 17836]
 gi|283808524|gb|ADB30363.1| ATP-dependent DNA helicase PcrA [Kribbella flavida DSM 17836]
          Length = 773

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 77/740 (10%), Positives = 204/740 (27%), Gaps = 119/740 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD-----VVEEKFTADLLLSYNL 99
            S+     T +A  E+R   +E+ G ++ ++  + +        +  +     +  ++++
Sbjct: 76  GSILAITFTNKAAAEMRERVVELVGPRAKLM-WVSTFHSSCVRILRRDIKRFGISSTFSI 134

Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
                + +RL+ L          +             +      +    A   ++ ++  
Sbjct: 135 YDDTDS-RRLMTLVC--RELDLDVKRYNPRAVLNWISTQKNELIDHETAASKTSNHLEET 191

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             E                              + + ERL + NA       +  +    
Sbjct: 192 YAEC----------------------------YRIYQERLAQANALDFDDLLMTTVNLLQ 223

Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNG-------AIVLPGLDCH 265
                    +     +++     +  A   L+  +   + P G       A ++   D  
Sbjct: 224 AFPEVREYYRRRFRHVLVDEYQDTNHAQYTLIRELCGEDEPGGSGPVVPPAELMVVGDSD 283

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +   T ++      +   +             L+      + + + +N +  R+ 
Sbjct: 284 QSIYAFRGATIRNILAFEQDFAGAETIL---------LEQNYRSTQTILSAANAVISRNE 334

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                 L  D                       +A+  ADNE +EA  +A  +    D +
Sbjct: 335 GRMAKNLWSDQGQG-----------------EQIAVYVADNEHDEAQFVADEIDRLTDAD 377

Query: 386 K---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                  A+       +R  +    R G    +  G+            + L  +    D
Sbjct: 378 GVKPSDVAVFYRTNAQSRVFEEVFIRTGHPYKVVGGVRFYERKEVRDALAYLRVLVNPED 437

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            +++  ++  P                       RG  +  +         DRI+  +  
Sbjct: 438 TVSLRRIMNVP----------------------KRGIGDRAEAAIEALAARDRISFAQAM 475

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                  + ++          VD + +    + +     +     L  S + +       
Sbjct: 476 RRAQDAPA-MASRSVNAVQSFVDILDELTAMVDSGAPPDDILDVALHRSGYYEELQKS-- 532

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                + +    L   +E  +++  F +         ++   +++ +  + D + +   +
Sbjct: 533 ----PDPQDETRLENLDEFISVAREFVEERTAAGE-PSDLQAFLERVALVADADQIPDAV 587

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
           +    + ++    ++ L F  + L G+ +GV+P + +          +D+     E+ + 
Sbjct: 588 DDGGVVTLMTLHTAKGLEFPVVFLTGMEDGVFPHSRS---------LTDMKELEEERRLA 638

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                             RS          SR+L+ +         D            +
Sbjct: 639 YVGITRARQRLAISRAAVRSAYGAPQHNPPSRFLEEIPAELLDWRRDESAITRWSGTGTS 698

Query: 743 RKLDYTTKQPHYKRPKPFPP 762
           R     ++    +R     P
Sbjct: 699 RGSGIPSRYEPARRTASDKP 718


>gi|169629241|ref|YP_001702890.1| hypothetical protein MAB_2155c [Mycobacterium abscessus ATCC 19977]
 gi|169241208|emb|CAM62236.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 293

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 74/244 (30%), Gaps = 16/244 (6%)

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
           +       +    S S        P     R I +L              RG+L H  + 
Sbjct: 3   ETTRDRPVRRPALSPSRASDFKQCPLLYRLRAIDRLPEP-----PSAAQARGSLVHAALE 57

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH--IDIIWRHLFHKISHSFLE--HEEK 873
           +L  +   +        + +       + N      ++      F   +   L   +  +
Sbjct: 58  DLYTRPAAEREYATAAGLVEPAWERLVESNPELAEVVEAERLPRFFDEARDLLSGYYRLE 117

Query: 874 IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
             +  +        ++ +    + L GF DRID+   G + + DYKTG  P+     K +
Sbjct: 118 DPTRFDPDSCEERVEVELADGTM-LRGFIDRIDIAPGGAMRLVDYKTGRAPRALFEAKAL 176

Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
             Q+   A AL               L  + L     +D   ++ +    ++      + 
Sbjct: 177 -FQMKFYAVALYR-----TRGVVPRRLRLLYLSDGEVLDYAPDEAELLKFEKTLMAIWRA 230

Query: 994 LIEI 997
           +  I
Sbjct: 231 IQNI 234


>gi|261337326|ref|ZP_05965210.1| ATP-dependent DNA helicase PcrA [Bifidobacterium gallicum DSM
           20093]
 gi|270277699|gb|EFA23553.1| ATP-dependent DNA helicase PcrA [Bifidobacterium gallicum DSM
           20093]
          Length = 878

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 71/698 (10%), Positives = 182/698 (26%), Gaps = 104/698 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A  E+R     + G ++  +  + +           +            
Sbjct: 63  SQILAITFTNKAAAEMRERLEALIGPEAQRM-WVSTFHSACVRILRRNGESVG--LKSGF 119

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP-ANAIWLAKNLADIIDIIE--T 161
           +I    +  RLI +  + L   IK   P + L+         I     LA      +   
Sbjct: 120 SIYDTADCERLIKLIASDLNVDIKRFTPRNILARISDYKNQLISWQTQLATYAADYKPGM 179

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--- 218
              ++  +                +   +    +  RL   NA       +  +      
Sbjct: 180 RGYQFGRIGN------------VEELYAVMYAEYQHRLRMANAVDFDDLIMRTVELLQTD 227

Query: 219 --AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG----------AIVLPGLDCHI 266
                  +     I++     +  A   L+  +A               A V    D   
Sbjct: 228 PQVADYYRNRFRFILVDEYQDTNHAQYVLIRELAGIDQAKSGGAGGRPQASVTVVGDSDQ 287

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               +      +      +                 L+      + + + +N +   +  
Sbjct: 288 SIYAFRGADISNIQDFEQDFP---------NARTIMLEQNYRSTQTILDAANAVIANNEG 338

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
                L                          +    ADN + EA  IA  L     +  
Sbjct: 339 RKPKKLWTAVGSGEL-----------------ITGYAADNAQLEAHWIAQELLRLNTQEG 381

Query: 387 K---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                 A++      +R ++  L R  +   +  G             + L AI    D 
Sbjct: 382 VRFCDMAIMYRANAQSRALEEGLIRAHVPYQLVGGTKFYERREVKDAMAYLQAIVNPADN 441

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
           + +  ++  P        K    A+    + A            L+              
Sbjct: 442 VNVRRILNVP--------KRGLGARAEALVAAHADEIGGTFWQALEQA------------ 481

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                   ++           D ++            ++ +  +  ++   K +    + 
Sbjct: 482 ---DSIEGMTARTANPLRRFRDLMVSLRQ-----FAAEHDSKPSAIVAQVLKESGLLEEL 533

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
              D+ +    +    + +++++ + +          +   +++    + D + +  + E
Sbjct: 534 RKSDDPQDASRVENLSQLQSVAAEYEQTTPDA-----SLAGFLETTALVADSDQLPGEQE 588

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
            +  + ++    ++ L +  + L G+ +G +P + A         +  L    A   I +
Sbjct: 589 DTGKVTLMTLHTAKGLEYPVVFLTGMEQGTFPHSRAMEDDTELSEERRL----AYVGITR 644

Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
           A     +          R+        + S++L  +  
Sbjct: 645 AKRHLYVTRAA-----VRAQWGQANEMLPSQFLDEIPD 677


>gi|320095790|ref|ZP_08027434.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977274|gb|EFW08973.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 1196

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 72/723 (9%), Positives = 169/723 (23%), Gaps = 57/723 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----------SLGDVVEEKFTAD 92
             +SV     T++A  EL     +     +  +P ++          +     E      
Sbjct: 77  APSSVLGLTFTRKAAGELGDRLRQRLALLARRVPSLRERLDEDPVSLTYNSFAERIVAEH 136

Query: 93  LLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
            +          ++    +  + +++  W   L + +                       
Sbjct: 137 GMRIGIDPDFTMLTEAGAVDLMTQIVEGWPTDLDEDLSPSAAVGHCLHLAGEVGEHGYTV 196

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI-ASKYWTERLVELNASSPVG 209
             A   D +E   +  E + A  +         A     +   + +  R  E        
Sbjct: 197 EEAR--DALEGFGRDLEQIGATNDTARKTLRANARRLAYLGPVEEFQRRKREGGLLDFSD 254

Query: 210 YQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
             +   R   E        +     +++     +      L+S +    +   V    D 
Sbjct: 255 QLVLATRIVREAPEVSAQVRDEFQAVLLDEFQDTSVIQMELLSLLF---HDHAVTAVGDP 311

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
           +     W   +  S                    L       R  ++    V+  +   S
Sbjct: 312 NQAIYGWRGASASSLERFLDRFQDGPAQPGQTLTLSTAWRNDRNILRAANRVAAPLREHS 371

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
                  L            +           + V  + A              R + + 
Sbjct: 372 RAAKSPVLRARPGAGEGRVDVAYTQDYRSALGAVVDFVSAH-----------RARGTREG 420

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
            +  +A++   R+    V + L   G+   I     L          + L          
Sbjct: 421 KRPTTAVLCRRRSDFPYVDMALREAGVPTQIVGLGGLLDQPSVQDARAALVLADD----- 475

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
               +   P          L  A         R           ++++LD +        
Sbjct: 476 ----VEASPWLARLLAGIDLGAADLVALGDWARHLAREEGRDPHRAVLLDAVDNPPEPGW 531

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                +R        AV  V  +   +  +              ++S    L       +
Sbjct: 532 SASGGARGRPAISGEAVRRVRTLGSRLRAVRAGAGRSVVEQVERAVSIMGILDDVVSDPL 591

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                  L                S   E      ++ + ++D+     +G         
Sbjct: 592 AAGGRAALDAFVDVAA--------SYEAEVPGASLSSFLAYLDMADERENGLEAPVSEPD 643

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
              + I+    S+ L +D +++  +++GV+P ++ +     R           +    + 
Sbjct: 644 PQAVQIMTVHASKGLEWDGVVVFAMDDGVFPSHSKRRTVDWRDG------PPTDSGWVRD 697

Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           A           +       +       S   ++ L            +R +  L +   
Sbjct: 698 ASALPYPLRGDCMDLPDFDLDVEGEAKPSATFKKWLEGDYEARLGEHAEREERRLAYVAM 757

Query: 745 LDY 747
              
Sbjct: 758 TRA 760



 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 79/299 (26%), Gaps = 40/299 (13%)

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
             L  T +          SR               +++     +    +            
Sbjct: 871  RLALTEAEAAFPEGPGPSRAAVARAAAQVRREIASMRADADVFDLLAQMEGEPGVADTVA 930

Query: 756  RPKPF------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
              +        P +E        + + +L++DP A  AR        P   +  + +  G
Sbjct: 931  LLEEHRVSLEAPVVEIWQDRVPATSVSELLDDPQAFAARVR-----RPMPAEPSESSALG 985

Query: 810  TLFHNIITELIK----------------KRINKNTPEINHLMKQIIDSHFEKENL---PP 850
            T+FH      +                   +    P         +D+            
Sbjct: 986  TVFHAWAERQLHLASPEPAGGDPTAPGDGPLGSLLPADEAGAGGGVDASLGGGPQVVEEA 1045

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
             +D   R     +  +F E      +    + +  P  + +   G+ + G  D +     
Sbjct: 1046 ALDERSRAKLEVLRANFTEFVATELAGCSPVGIEEPFSVEV--GGVSVQGRIDAVFERTG 1103

Query: 911  G---FVDITDYKTGDN---PKKETAQKLIDPQLSLE--AAALKAGSFSQIDCRKVANLF 961
            G      + D+K+G            +    QL L   A + +AG        +VA L 
Sbjct: 1104 GGGPRFVVIDWKSGRAVDRRTDPAKLRYFITQLRLYRRAWSQRAGVPESAVEARVAFLA 1162


>gi|240169400|ref|ZP_04748059.1| exodeoxyribonuclease V subunit gamma [Mycobacterium kansasii ATCC
           12478]
          Length = 1094

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 82/869 (9%), Positives = 206/869 (23%), Gaps = 54/869 (6%)

Query: 41  PLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN 100
           P   AS  + V  +   + L     ++ G +      + +       +     +      
Sbjct: 27  PDPFASELVLVAARGMERWLSQHLSQVLGSRGAHGDGVCAAVTFRSPQSLIAEITGTADT 86

Query: 101 PPVSNIQRLLELARLILIWRNKL----PDIIKDLYPESPLSLPISPANAIWLAKNLADII 156
            P S       L  +I    ++            +    +   +       +A+ LA + 
Sbjct: 87  DPWSPEAMTWPLLEVIDTVLDEPWCRSLATHLGHFDTDAVEAELRRGRRYSVARRLAGLF 146

Query: 157 DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
                +        AL               L    + W   +  + A  P       + 
Sbjct: 147 ASYARQR------PALLAGWLDGHLDGVDADLAWQPELWRALVAAVAAEPPHLRHERTVA 200

Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                        + + G T       +L+  +A H +  + LP     +  A+      
Sbjct: 201 RLTAGPADLPA-RLSLFGHTRLACTDVQLLGALATHHDLHLWLPHPSDDLWQALAGVHGA 259

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
                 +S         ++L + L  L       + L                  L    
Sbjct: 260 VQRRQDTSGHAARHPLLHTLGRDLREL------QRALPAAPATDEFLGGTTKPDTLLGWL 313

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALI 392
                 +        +      V +        +   +   L   L++      +   ++
Sbjct: 314 QADIAANEARPDGRRLAAGDRSVQVHACHGPARQVDVLREVLLGLLEDDPTLQPRDIVVM 373

Query: 393 TADRNLARRVKLEL-----------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
             D      + +                 + + ++      T     +   LL       
Sbjct: 374 CPDIETYAPLIVAGFGLGEVAGLGHPGHRLRVRLADRALTQTNPLLGVAAELLVIAGGRA 433

Query: 442 DFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
               +  L +         F   +  +         +    ++       L+  + +   
Sbjct: 434 TASQVLNLAQAIPVRARFGFSDDDLDVITDWVRQSNIRWGFDRRHRRPYGLERFLHNTWR 493

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              +        S  S    + A+ L D     +                +         
Sbjct: 494 FGIDRILTGVAMSDDSRAWLDTALPLDDVGSNRVDLAGRLAEYVARLHHVVERLSGAMPL 553

Query: 558 VTCLQNVCLDEHR--KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
              L  +        +    W + + +   +         +       +   ++   + G
Sbjct: 554 TDWLDALTDGVGLITRCDEDWQQAQLQREFADVRAQAGDRAATLLRLPDVSALLDASLAG 613

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +    ++ TL +   +  R +    + L GL++G++P+++A +      + +   + 
Sbjct: 614 RPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLLGLDDGIFPRHSAPD---GDDLLARAPMT 669

Query: 676 TAEKYIGQAAHDFEMANGTRH----LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
                  +       A G+      + YT +      P   +  L  LL          +
Sbjct: 670 GERDVRSEDRQLLLDAIGSATETLVITYTGADEHTGQPRPPAVPLAELLDALDRTTVAPV 729

Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
           + R        +  D     P    P      +      + +          A +    L
Sbjct: 730 R-RQILTRHPLQPFDRKNVTPGALVPATPFTFDPAALAAAEAATGT--RCAPAPFIGDRL 786

Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
                     D    D    F N +    +   +   P     ++  +    +       
Sbjct: 787 ----PEPPTGDVTLADLLDFFKNPVKGFFRAL-DVTLPWDVDTVEDEMPVEIDALQAWTV 841

Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
            D I   +   +      + E  + ++  
Sbjct: 842 GDRILHDILRGMHPDAAANAEWRRGTLPP 870


>gi|325694248|gb|EGD36164.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK150]
          Length = 762

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 67/627 (10%), Positives = 170/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  ++     +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVEKIRDFAASQEISLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRERLDDFTVTKLVEAVLEKTGYAAALAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  +  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPAD-ESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRAS 587


>gi|194367787|ref|YP_002030397.1| exodeoxyribonuclease V subunit gamma [Stenotrophomonas maltophilia
           R551-3]
 gi|194350591|gb|ACF53714.1| exodeoxyribonuclease V, gamma subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 1114

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 105/977 (10%), Positives = 234/977 (23%), Gaps = 123/977 (12%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            +L   L  N R       LLA   + +P     + L++      G  + +     + G+
Sbjct: 17  DVLAALLARNVRAPVPGQPLLAPEVVLIPQVAMRRWLQATLAAEFGVAANL--EFLTPGE 74

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            V     A++    +         +      L    R+        +             
Sbjct: 75  FVARALKANISGEQDDLDAAGLHWK------LYQALRDPALLAQPPMRALQSYLAGGDAL 128

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               LA  LA + +  +   + W            + W   AD     +  W        
Sbjct: 129 KPWALAGELASVFEKYQAWRRDW-----------LLRWAAGADPADPQAILWRTI--THG 175

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                      +           +G    +    +    P   R+M+T A        +P
Sbjct: 176 HDYRARRIQEYLDRFEGAGKPLPQGLPLRMSAFATLNISPDVLRVMATQARVGELHFYMP 235

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV---------- 310
                    +        +                  +LL+       D           
Sbjct: 236 TPVQSYWGDLQTLAERLRSGAPDPFGEA-----AGENRLLEAWGAAGRDFMAVLGSYEVV 290

Query: 311 ----------KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                         +    +    +  S           R           ++     + 
Sbjct: 291 HPAGEIAAYSDPEEDTRPTLDEGGLSDSLLHRLQRDLFHRRALPSGELRDGLRSDDPSLQ 350

Query: 361 LIEADNEREEAISIAIALRMSLDENK-------KKSALITADRNLARRVKLEL------T 407
           +        E   +   LR  L + +       ++ A++  D +        +       
Sbjct: 351 VHACHTRLRELQVLHDQLRSLLQDPRFDPPLQAREIAVLAPDIDPYVPYLEAVFGGRGGE 410

Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG--FPEKYLS 465
              I   ++   PL+    + +   LL           +  L+                 
Sbjct: 411 EEHIPYALADSSPLAGEPLADVFVHLLGLPVSRFGLNEVLDLLASAPLAEAAGLEAVDFD 470

Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
           R    L+    R   ++      ++   D    Q     +    +  SE D       ++
Sbjct: 471 RLHGWLQQAGARWGLDAKHRHQHQAPADDAYTWQFALDRLVLGHATGSEADLAGVAPWIE 530

Query: 526 -------HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                   + + +  L      +      L+ + W +  ++ L  +         +    
Sbjct: 531 LEGGALDALDRLLRLLRVLAVYQRRLGELLTPAQWRQRLLSLLDALLPTAPSSPNSQRAL 590

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E  + L + F+              E +         E        +  +     +  RL
Sbjct: 591 ERLRKLLNQFADDAAKAGFEDGVPPEVVRSHFAGALSEADTRAPLLTGGISFGRMVPMRL 650

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPF--LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           L F  + + GLN+G +P+         L+  + +                 F        
Sbjct: 651 LPFRVICVLGLNDGDFPRRDPAAGLNQLTAELDTPRRRPGDRSTREDDRFLFLQLFAAAQ 710

Query: 697 ----LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL--------------------- 731
               L Y  +   +      S  +  L+        D                       
Sbjct: 711 EVFYLSYLGADPRDGSVREPSVLVSELIDAAAAYHLDPPAAVRDFTVRHALQPFSPAAFG 770

Query: 732 ---KKRGQCYLDWTRKL-----DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
               +R      W              QP +  P P P  +A     +   +++ + DP 
Sbjct: 771 DGDPRRFSYRRQWHPAAGRLTGQRGGLQPWFDAPLPPPLDDAVEDEVALDTLRRFLCDPA 830

Query: 784 AVYARRILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
             +  + L L      ++  D      + RG    ++   +++  ++ ++  +   ++  
Sbjct: 831 GQFLAQSLGLRLADDVEEVDDLEPLVLSSRGPEKRSVQAAVVRATLSGDSEPLYPRLR-- 888

Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                    L      + +      + + L   +       +  V        +  G+ L
Sbjct: 889 ARGLLPSGPLGERQFEVEQLKTRPYASALLGWMQGEPLESRRYEV--------DIDGVRL 940

Query: 899 TGFADRIDLLKSGFVDI 915
            G     D    G V +
Sbjct: 941 HGRV--ADRHPEGLVRL 955


>gi|260220997|emb|CBA29121.1| hypothetical protein Csp_A10560 [Curvibacter putative symbiont of
            Hydra magnipapillata]
          Length = 1131

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 75/779 (9%), Positives = 175/779 (22%), Gaps = 71/779 (9%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPII 231
                 A   +   + +     E         + A +R           +  +      ++
Sbjct: 349  HQQRMARLSRGLLQDYAALKRERGWIDMGDLEQAALRLLSDEEISGWLQERLDARVKHLL 408

Query: 232  IAGSTGSIP----ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE--KSTNITSSN 285
            I     + P    A +  +   +   N   V    D       +                
Sbjct: 409  IDEFQDTNPLQWQALSTWLQGYSGAGNRPGVFIVGDPKQSIYRFRRAEPQVFRAAKAFVV 468

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                           +   I       +    +           S      S  +   I 
Sbjct: 469  EGLQGDVLSCDHTRRNAQAIIGLVNTAMLGAQDAGEFEDYRPHTSESVDAGSVWKLPRIE 528

Query: 346  ENKIPNIQKCFSDVALIEADNEREEA---------ISIAIALRMSLDENK-----KKSAL 391
                P        V        R E+            A  L   L         +   +
Sbjct: 529  RTAKPEEDGSEDLVWRDSLTTPRHESEDTLKTLECRQAARWLAGQLSGRGGQLRPQDIMV 588

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +   R     ++ EL    I         L        L +LL+ +      +++A  +K
Sbjct: 589  LARKRERLTLMQQELAALRIPAQQPEKNELGEMPEVQDLVALLDVLVSPAHDLSLARALK 648

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             PL      +       +       R       +    +++ +  A   +          
Sbjct: 649  SPLFGASDEDLVDLSLLHQTARRQARAADPDALVPGWMAVLCEFAAADPDVEGGLP---- 704

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                       L   +L     L  ++    S   + ++S          +         
Sbjct: 705  -----------LSQRMLSAARSLTRWQGWVQSLPVHDALSAIYDDGDVLARFAAASPAVL 753

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              +         L+++ + +                ++  L  G    P    +  + +L
Sbjct: 754  RES--------VLANVRALLNAALQVDGGRYSTAYTLVRALRAGGIPAPVRADAGAVRLL 805

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
                ++ L    +IL    +    +  +    +    ++        K++  A+     A
Sbjct: 806  TIHGAKGLEAPLVILLD-TDAEGTRPESMGVLVDWPGEAAY----PRKFVFLASESRPPA 860

Query: 692  NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
                 L   ++ R           L R             ++R   +    ++L      
Sbjct: 861  CVVDTLALEQTARAREELNALYVALTRTQSTLVLSSTAPHREREGSWWKRLQELAADVAP 920

Query: 752  PHYKR----PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                      +      A+P        + L                 +    +      
Sbjct: 921  STALEGVDSAESTESDTAEPFALWELPTEGLKRKVPLAPMEYARAAPELIAVTEPESLES 980

Query: 808  R-GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
            R G   H ++  L         P+ +    +         +L        + +   I   
Sbjct: 981  RIGQAMHRLLEWL--PLREGQVPDADAWTPEQCAQAARTFSLTEAQMQQAQRMAQGILGG 1038

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS-GFVDITDYKTGDNP 924
                  +  +           ++A+   G  L    DR+   +      + D+K+  +P
Sbjct: 1039 EGAWAWRRSALAWHAN-----EVALTHGGRTL--RLDRLVQRRDTAAWWVLDFKSSASP 1090


>gi|295839794|ref|ZP_06826727.1| RecB family exonuclease [Streptomyces sp. SPB74]
 gi|197697732|gb|EDY44665.1| RecB family exonuclease [Streptomyces sp. SPB74]
          Length = 284

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 86/271 (31%), Gaps = 39/271 (14%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S S     +  P     R I +L          +   RGTL H ++  L      + T 
Sbjct: 1    MSPSRAGDFMRCPLLYRFRVIDRLPEK-----PSEAATRGTLVHAVLERLFDAPAGERTA 55

Query: 830  EINHLMKQIIDSHFEKENLP----------------PHIDIIWRHLFHKISHSFLEHEEK 873
            E    +                                    W     ++   +   E+ 
Sbjct: 56   ERARALLPGQWEKLRAARPELDELFAGTAGGDAAAAGERLAEWLASAERLIERWFTLEDP 115

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK-SGFVDITDYKTGDNPKKETAQKL 932
             +  +E     +  + A++S G+ L G  DRID+   +G V I DYKTG  P+ + A++ 
Sbjct: 116  TR--LEPAERELFVETALDS-GLRLRGIIDRIDVAPATGDVRIVDYKTGKAPRPQYAEEA 172

Query: 933  IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
            +  Q+   A  +       +  R++  L Y+        D +  D          E+  +
Sbjct: 173  L-FQMKFYALVVWR--LKGVLPRRL-QLVYLGSGDVLTYDPVQGD---------LERVER 219

Query: 993  NLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
             L  +   ++          R S+      +
Sbjct: 220  KLHALWRAIEEATASGEWRPRPSK-LCGWCD 249


>gi|91974518|ref|YP_567177.1| hypothetical protein RPD_0036 [Rhodopseudomonas palustris BisB5]
 gi|91680974|gb|ABE37276.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 886

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 88/804 (10%), Positives = 186/804 (23%), Gaps = 73/804 (9%)

Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
                 M  +A    G ++ P     +  A++  +                 P    A  
Sbjct: 30  GVQIVTMGQLAARLAGGLLRPVDSEALQEAVFAALPVVDMGELEPIKLLPGMPGAVTATF 89

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
                   +           +      +                + + +I         +
Sbjct: 90  DKAWRAGVDLSSAAHPRLAALAALEQEVVGRLPASMKRPAELVAMAKERIAQASTVIGSL 149

Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            +        E       L  +L      + +       A      +T    +   +A  
Sbjct: 150 EIHG----HSEMSPCWRPLLEALANVVPLTWVAGPRHVPAWLEGTGVTVAKTDPTATATA 205

Query: 420 PLS----TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
             S              +   + +      IA     P          +  +   +  V+
Sbjct: 206 SYSCANQQHEVIEAFRWVRKLLAEGVQAADIAIAATGPADYDDHMFAQVQESNLPVHFVS 265

Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                 + D     +L                +         E        +L    PL 
Sbjct: 266 GVKALTTADGQAAAALAEVLAKGLSQERVRRLFALLRGSPALERIPREWTRLLPLGAPLT 325

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
             +  +       + SDW +        + +            + G+ L +     +   
Sbjct: 326 EMERWERVFARVEA-SDWPEGQDLSALVLEVLRLLDRGLAAATDVGEALLTGVPLSLWRR 384

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
           S  +         + RL         +E ++++     ++        + L G+N G WP
Sbjct: 385 SLREGPPAALPVTLGRL----RTPDALEPAASVIWCSAIDLASSPRPHVWLLGMNAGRWP 440

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI------P 709
           +  +++  +   +     L       G       +      +  + S R+         P
Sbjct: 441 RRISEDRLIPNHVLPIEELDPLPIADGDKRDFGTILATATEVAMSHSRRDAGGRLRGRSP 500

Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK----------- 758
            I S  +  L      +   +   R         KL          R             
Sbjct: 501 LIKSFAVTYLDRGRTPEHAASEADRLLACPAEFAKLPVAVSGIGCWRDWFSGGLTAHDGL 560

Query: 759 ----PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP--DRTDRGTLF 812
                    +   R+ S + +K L+ DP     R   +        +    D    G L 
Sbjct: 561 VAANHPRITKLFERSLSATSLKLLLRDPIRFVWRYGFRWTAPEDADEPLTLDGLAFGNLV 620

Query: 813 HNIITELIKKRINKNTPEINHLMK-----------QIIDSHFEKENLPPHIDIIWRHLFH 861
           H ++   +                            +     E    P  I         
Sbjct: 621 HAVLQNAVDGLSEAGGLAAADRAAIDARIAAAIGGTVAAWEAEFPVPPAVIWRSAVERAS 680

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPA------------------KMAIESIGIHLTGFAD 903
             + + L +        ++ +  IP                    + I   G+ + G  D
Sbjct: 681 TTATAALTYPMAALPD-QRSWTEIPFGKPDEAEGERDLPWPTEKTVEIPGTGLLIDGKID 739

Query: 904 RIDLLKSGF-VDITDYKTGDNPKK---ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
           R+DL        + DYKTG   +K   +      + Q  L A A++    + +    V  
Sbjct: 740 RLDLAGDRSKARVLDYKTGKLDRKMAEKVIDGGRELQRCLYAFAVRTLVEAGVG---VEA 796

Query: 960 LFYIRLKQKFKIDCITNDKKKYSA 983
             +     + +            A
Sbjct: 797 ALFYPNAPEGEQAVFPLTDAALEA 820


>gi|170724287|ref|YP_001751975.1| DNA-dependent helicase II [Pseudomonas putida W619]
 gi|169762290|gb|ACA75606.1| UvrD/REP helicase [Pseudomonas putida W619]
          Length = 729

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 60/696 (8%), Positives = 168/696 (24%), Gaps = 122/696 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+R    ++ G     +  + +   +      A                  
Sbjct: 63  VTFTNKAAAEMRQRIEQLLGINPAGM-WVGTFHGLAHRLLRAHWQE-------------- 107

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
              ARL+  ++    D  + L     +   +      W A+     I+  + E  + + +
Sbjct: 108 ---ARLVQNFQILDSDDQQRLVKR--VIRELGLDEQRWPARQAQWFINGQKDEGLRPQHI 162

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG---- 225
            A  +        L    ++   + + +              +  +    +H        
Sbjct: 163 QASGD--------LFLGTMRSIYEAYEQACERAGVIDFSELLLRALDLWRDHPGLLEHYQ 214

Query: 226 -TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                +++     +       +  +A    G  ++   D       W     ++ +  ++
Sbjct: 215 RRFRHLLVDEFQDTNAVQYAWLRLLAG-KGGGSLMAVGDDDQSIYGWRGAKIENIHQYTA 273

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
           +   +                              +              +     N+  
Sbjct: 274 DFPDAEMI--------------------------RLEQNYRSTGGILKAANALIANNSGR 307

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRV 402
           L  ++         + L  A NE +EA  +   +   + +  ++   A++      +R +
Sbjct: 308 LGKELWTDLGEGEPLTLYAAYNEHDEARYVVETIESLIKQGNSRSDIAILYRSNAQSRVL 367

Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
           +  L R  I   I  G             + L  I    +  A+  ++  P         
Sbjct: 368 EEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVP--------- 418

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                                     + +    +   + +          +      A  
Sbjct: 419 -------------------------PRGIGEKTVEAIREHARHSQLSMWGAMCQLLAAKA 453

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
           L       +   +    +      ++ +             V              E+G+
Sbjct: 454 LKGRAASALGAFIELIESLAGKVADMPL------HTMTQTVVEQSGLIIYHQEEKGEKGQ 507

Query: 583 TLSSLFSKIIETGS-----CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                  +++            A+       +             E   ++ ++    ++
Sbjct: 508 ARVENLEELVSAARNFETTDDDADLSPLSAFLGHASLEAGEAQADEHEDSIQLMTLHSAK 567

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RH 696
            L F  + L G+ EG++P                ++L+   +   +    +       R 
Sbjct: 568 GLEFPYVFLVGMEEGLFP--------------HKMSLEEPGRLEEERRLAYVGITRAMRQ 613

Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
           L  T +       +     + R +          ++
Sbjct: 614 LFMTYAETRRLYGSETYNKVSRFVREIPPGLVQEVR 649


>gi|325687804|gb|EGD29824.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK72]
          Length = 762

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 63/695 (9%), Positives = 178/695 (25%), Gaps = 122/695 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQECL---ITTFHSLCIRVLRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++            +L  +       +    I  AKN  D+ID   
Sbjct: 109 TIVGPSEQRTLMKRIL---------NNINLNSDEEKWNERAILGTISNAKN--DLIDEEA 157

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 158 YANLAGDKYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 202

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 203 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 260

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 261 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 294

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALIT 393
                N +     +    +   ++    A +E++EA+ +A  +     E  + K  A++ 
Sbjct: 295 EVIRNNRNRRPKNLWTQNEDGEEIVYYRAKDEKDEALFVARTIAQLSREGYSYKDFAVLY 354

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  +   +       +      + S LN I   +D ++   +V  P
Sbjct: 355 RTSAQSRTVEEALLKGNMPYTMVGSTQFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 414

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  ++     +  +  + +          
Sbjct: 415 -----------------------KRGVGPGTVDKIRDFASSQEISLLDASANILLSPVKG 451

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 452 KA--------AQAVYDFANMLLDLRERLDDYTVTELVEAVLEKTGYATALAAQATLESQA 503

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  +  ++   +    +  L          + SS + ++  
Sbjct: 504 RIENIEEFLSVTKNFDESSDNPAD-ESGLDKLSRFLNDLALIADTDDVDQDSSEVTLMTL 562

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + + G+ E ++P                      +    +    +     
Sbjct: 563 HAAKGLEFPVVFIIGMEENIFPFKW--------------GESKEKDLEEERRLAYVGITR 608

Query: 694 TRHLIYTRSLRENN-----IPTIASRWLQRLLVLG 723
              ++Y  +               + +L+ +    
Sbjct: 609 AEKILYLTNANSRMLYGKTNCNQPTCFLREISSAL 643


>gi|289751891|ref|ZP_06511269.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T92]
 gi|289692478|gb|EFD59907.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T92]
          Length = 364

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 78/331 (23%), Gaps = 21/331 (6%)

Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
               +  +           A  L +++           +L  L   +    W+ A  F +
Sbjct: 41  AATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRCRGRPEWIAAGQFAQ 100

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
              +              V      +   A            + G+     A    +   
Sbjct: 101 RYEQ--------------VMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAA 146

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA--KLLDFLDIKR 307
                  +++       P A        +    +          +     +    L    
Sbjct: 147 ERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDP 206

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFSDVALIEADN 366
                    S  +                   R     +  +I         V +  A +
Sbjct: 207 PPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGS 266

Query: 367 EREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISA-GIPLS 422
              EA  IA ALR +   +       A+I      A R+   L   G+ +   A G PLS
Sbjct: 267 AHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGGPLS 326

Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  L ++L A     D      L+  P
Sbjct: 327 AEPAVRALLTVLEATADGLDGDQALLLLTGP 357


>gi|229101824|ref|ZP_04232539.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-28]
 gi|228681617|gb|EEL35779.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-28]
          Length = 1195

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 93/893 (10%), Positives = 208/893 (23%), Gaps = 130/893 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229
              +            +K+ ++ +     +         +   ++  +E    G   P   
Sbjct: 292  DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAV 351

Query: 230  ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278
                      +++     +      ++  V         +    D       +       
Sbjct: 352  ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 411

Query: 279  TNITSSNTTYSTH-------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T              +     + L       K++                  
Sbjct: 412  FLGKYKRFTQEGSGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 471

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
                         L       ++        E +  + EA  +A  ++  +D        
Sbjct: 472  GASYPEGEDVAAELLCIQQTEEEVLEGEEGTEVEKAQLEARLMAQRIKAMVDSGYEVYDR 531

Query: 385  --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                      +   ++      A ++  EL   GI +              +I+ ++   
Sbjct: 532  KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 591

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I      + +A +++ P+      E    RA            +     +    L  ++ 
Sbjct: 592  IDNPMQDIPLAAVLRSPIVGLNDEELATLRA----HGKKGSFYEVMSSFLKDAPLEEEQE 647

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ---CITPLVTYKTNKNSTCGNLSISDW 553
              +K        Q       ++    L+  +         +      K        + D 
Sbjct: 648  LHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDR 707

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
             +              R +  +    +    +    +  +    +  +  + ++     +
Sbjct: 708  ARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFV 767

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNF-------------------------------- 641
             G   +   +     F+L         F                                
Sbjct: 768  AGLGRRFNTQDLMKRFLLHKDFGFGSPFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRV 827

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFEM--ANG 693
              + L    E +    T K+       +L     S+  L    +       D+       
Sbjct: 828  LYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYR 887

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             R       L + +IP     +     V    G         + +         +     
Sbjct: 888  HRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELLEALREKKAVP 947

Query: 752  PHYKRPKPFPPLEAQPRTY----------SFSEIKQ--LINDPYAVYARRILKL----DF 795
               +R +           Y          S +EIK+     D       + L+       
Sbjct: 948  LESERKEEVYDRLLWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNAFIKKLRAPIKTRP 1007

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                KK     +RGT  H ++  +     +   P     +++ I     KE L    +  
Sbjct: 1008 RFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITAETLQEQIAGMVNKELL--TFEQA 1060

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI------------ESIGIHLTGFAD 903
                  K+   F     K   + + +   +P  M +                I + G  D
Sbjct: 1061 EEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKNGESILVQGVID 1120

Query: 904  RIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALKAG 947
             +   + G + + D+KT    G  P      K         QLSL A AL+  
Sbjct: 1121 CMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKS 1172


>gi|171913186|ref|ZP_02928656.1| hypothetical protein VspiD_18440 [Verrucomicrobium spinosum DSM 4136]
          Length = 273

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 80/282 (28%), Gaps = 29/282 (10%)

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                P          L    +T S S +   +      Y R +LKL              
Sbjct: 5    AVSPPQKVERSENEILTGLQQTVSASRLTLFLQCRLKFYYRYVLKLPKPKPAS-----LH 59

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
             G + H  +    K      TP     +       ++ +N    +D        +++   
Sbjct: 60   VGNVVHATLKAWHKA-RWIGTPLTLKGLHDEFSKAWDDQNKEEPVDWQGEEEDERLTAWR 118

Query: 868  LEHEEKIQSSIEKI----FVNIPAKMAIESIGI-HLTGFADRIDLLKSGFVDITDYKT-G 921
            L      QS  E       V +P +  + S G+  L G  D +   K     I DYKT  
Sbjct: 119  LCELYYRQSGFEHAEKPDAVEVPVETDLSSHGLPRLIGVLDLVQQRK-----IIDYKTSS 173

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
              P  E      + Q S+ A   +  +   I    +     ++LK               
Sbjct: 174  TTPNSEKVAHTHEVQTSIYAILFREAA--SIREEGIELHHLVKLKNPKLCITQLPP---- 227

Query: 982  SADELSEKSLKNLIEIVTLLQNG--EQPFISHLRLSEKSNIQ 1021
                +++     L  ++     G   + F+    +   S   
Sbjct: 228  ----MTDSQQNRLFHLLEAYLEGIDRKDFVPSPGMGCASCEF 265


>gi|163790444|ref|ZP_02184875.1| exonuclease RexB [Carnobacterium sp. AT7]
 gi|159874348|gb|EDP68421.1| exonuclease RexB [Carnobacterium sp. AT7]
          Length = 1206

 Score = 84.6 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 92/302 (30%), Gaps = 37/302 (12%)

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
             P   R      L  +    S S ++    D Y  +    LKL     F+        G 
Sbjct: 809  VPMPLRNTIATDLYGKDLYLSVSRLEAFYADHYGHFLTYGLKLKERDVFE--LSPAGTGE 866

Query: 811  LFHNIITELIKKRINKNT---PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS- 866
             FH+ +  L K  I KN         +++++      +    P   I+      K     
Sbjct: 867  FFHDALDHLFKTIIQKNLSFNQLNEEMLEELTTEVLTELYGKPKFSILNASNRMKYIRDQ 926

Query: 867  ---------FLEHEEKIQSSIEKIFVNIPAKMA-----IESIGIHL--------TGFADR 904
                     ++   +  +++++ I   +          IE +   L         G  DR
Sbjct: 927  LGQTIKKMVWVIGNQSRRTNMKNIQTEVLFGHVANQTGIEGLSFRLNNGGTLYLRGKIDR 986

Query: 905  IDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVAN 959
            +D +  G    + + DYK+  +    + A   +  Q+          +   I    K A 
Sbjct: 987  VDAMTVGTESYLSVVDYKSSAHKFNYQDAYYGLAMQMITYLDTALQNAVDLIGHEAKPAG 1046

Query: 960  LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL----IEIVTLLQNGEQPFISHLRLS 1015
             FY+ +   F       D+  Y  + L    +  L      ++  L    +P  + L   
Sbjct: 1047 AFYLHVSNPFMKKGTFLDEDAYIKELLKSYKMDGLLLEDEAMLLSLDPTIEPTTASLVYP 1106

Query: 1016 EK 1017
              
Sbjct: 1107 FN 1108



 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 70/658 (10%), Positives = 182/658 (27%), Gaps = 61/658 (9%)

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
           + + +L++    KL     ++  E  +         +   +     +D +         +
Sbjct: 102 MLIRKLLIEHEEKLTIYRGEVRKEGFVQQMTDLFLELRSGRITQIDLDQM---------I 152

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
             L N      + L    L +  + +   L+            AL++   E     ++  
Sbjct: 153 LNLGNSPKETDFKLKLQDLSLIYQAFDAALLNKY-IESEDIVSALIQKVTEL--DLSETT 209

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
           I I            L+  +        +    D               T+ T+      
Sbjct: 210 IYIESYYQFTAQEQALILALMKAAKKVTIALTTDKAYAVEKPEMHNLFQTSGTTY----- 264

Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
               Y L +L    ++     K +             +   ++         +      +
Sbjct: 265 ----YKLYQLARQNNVPVYKDKVIQEKDASYCEELNQLEDFWVETSQ----LSPATTVSL 316

Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALITADRNLARRVKLEL 406
            +     + + +  A+N++ E   +A  +R  +       K   ++T + +    +   L
Sbjct: 317 ASSDVMGNCIEVWAAENKQAEITHVAKEIRKLVATGHYRYKDILVLTRNMDDYLAIIEPL 376

Query: 407 -TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
            T   I + I +   ++      ++ +L++   +   +  +  L++  L    F E+   
Sbjct: 377 FTSHAIELFIDSAELMNQHPLIEVIDALVSIYKRNWRYADVMRLLRTELVIPAFEEQESL 436

Query: 466 --RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                  +     R  K    +   ++++L       + T    W       +       
Sbjct: 437 SKERAQRVSQQVERAQKYREKVDITENVLLAYGYEGYHWTKTEPWHYTRYFYEDAEFQSD 496

Query: 524 VDH----------------ILQCITPLVTYKTNKNSTCGNLSISDWTKL--TVTCLQNVC 565
            D                 ++     L   KT+K++        +   +   +   ++  
Sbjct: 497 NDQRIEQTANSIKTAVSGLLVPFFKRLEKAKTSKDAAKELYLFMETVGVNDQIGFWRDQA 556

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
           ++++        E+  +T   L  + +E       +   +  I+    D  T        
Sbjct: 557 IEDNNLEEARKHEQTWQTFLQLLDEYVEVLGDEPFDLDSFHAILMTGFDNATYSMVPPSI 616

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ---------SDLNLKT 676
             +   G   +R+       + G+ +   P  T     L+   +         +     T
Sbjct: 617 DQVTFSGIEGTRIGTAKLTFMLGVTDAHLPAKTENKSILTEEDRDFFSYFLDETQYLKPT 676

Query: 677 AEKYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIA-SRWLQRLLVLGGTDFFDNL 731
            E  +         A    +  LI++    +        S ++ R+           L
Sbjct: 677 VEAVMASEPFIAYQAFLDSSEKLIFSYPTSDETKNGPKLSPYVDRIAKAFQLPIQAKL 734


>gi|237814293|ref|YP_002898744.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei MSHR346]
 gi|237505661|gb|ACQ97979.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei MSHR346]
          Length = 695

 Score = 84.6 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 79/711 (11%), Positives = 174/711 (24%), Gaps = 112/711 (15%)

Query: 34  FRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP------------IIKSL 81
                  P  +A+VT    T +A  E+R    ++   K+   P             + + 
Sbjct: 42  IEAKGFEPRHIAAVT---FTNKAAAEMRERVGKLLEGKTLTTPGKEGRKVPVNQLTVCTF 98

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             +  +    +                          +     D    +  E   +    
Sbjct: 99  HSLGVQILRQEAEHVGLKP-----------------QFSIMDSDDCFGMIQEQIGTTDK- 140

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 L + +  II + +      E+  A+           A        + +   L  
Sbjct: 141 -----GLIRKIQTIISLWKNGLVAPEE--AMTIAANEDEHQAAL-----VYRNYVATLHA 188

Query: 202 LNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             A              A +       +     ++I     +      L+  +A     A
Sbjct: 189 YQAVDFDDLIRLPTELFARNEPVRDRWQNRLRYLLIDEYQDTNACQYELLKLLAG--PRA 246

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                 D       W   T ++      +              +  L+       R+   
Sbjct: 247 AFTAVGDDDQAIYGWRGATLENLAQLGKDFP---------KLHVIKLEQNYRSTVRILTA 297

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +N +   +  + +  L  +                       + +   ++E  EA S+  
Sbjct: 298 ANNVIANNPKLFEKKLWSEH-----------------GMGDSITVTPCNDEEHEAESVVF 340

Query: 377 ALRMS---LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            L           +  A++      AR  +  L R  I   +S G           L + 
Sbjct: 341 RLSAHKFERRTQFRDYAILYRGNFQARVFEQVLRRERIPYVLSGGQSFFDKAEIKDLCAY 400

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L  I   +D  A    V  P    G        A      V+L        I       L
Sbjct: 401 LRLIANADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGI----EARL 456

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                +         Q      DKE A +++D +++ I          +         + 
Sbjct: 457 SARQVEPLRIFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNV 516

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +      +     E             +      ++       +       + +I  + 
Sbjct: 517 LEFLEWLKRKGTKPE------------AEQAVDGEAEGFHNADGLADTGKNLLGLIQTVA 564

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               ++ K E    + +     S+ L +  + L G+ EG+ P +   +            
Sbjct: 565 LMSMLEGKEEDPDAVRLSTVHASKGLEYPHVFLVGVEEGIMPHSGGSDD----------G 614

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA-----SRWLQRL 719
               E+   +    +      +  ++    ++            SR++  +
Sbjct: 615 PIDDERIEEERRLMYVAITRAQRSLHLNWCKKRKRARETIVCEQSRFIAEM 665


>gi|163738014|ref|ZP_02145430.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107]
 gi|161388630|gb|EDQ12983.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107]
          Length = 1122

 Score = 84.6 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 70/804 (8%), Positives = 187/804 (23%), Gaps = 116/804 (14%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHLMKGTKGPIIIAGSTG 237
            DF  +    +  R             +          + A   + + G    I++  +  
Sbjct: 339  DFAAVFLPEYDRRKQLRGWLDFDDLILKARQLLNDPAVAAWVLYRLDGGIDHILVDEAQD 398

Query: 238  SIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            + P    ++  +A                +    D       +      + +   +    
Sbjct: 399  TSPVQWDVVEKLAQEFTAGEGARSEVERTIFVVGDKKQSIYSFQGADPDAFDRMQAEFAD 458

Query: 289  S----------THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                          ++S       L +     K   +     + R  +            
Sbjct: 459  RLAETGSALQNAALEFSFRSSAAILGLVDLVFK---DSPGAGFHRDALHRAFKSELPGRV 515

Query: 339  MRNTDILENKIPNIQKCFSDVALIEA-DNEREEAISIAIALRMSLD-------------- 383
                 + +      +     V    A  +    A  IA A++  +D              
Sbjct: 516  DLWPVVDKVDTEEERDWTDPVDRPGARHHTVILAERIATAIKEMIDGKVTLPEDGPERGS 575

Query: 384  ------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                  +      L+     L   +        + I  +  + +   L    L +LL+ +
Sbjct: 576  FRRRPVQAGDFLILVQRRSELFSEIIRACKAARLPIAGADRLKIGAELAVKDLAALLSFL 635

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                D +++A  +K PL  +     +    +           ++          ++D + 
Sbjct: 636  ATPEDSLSLAAALKSPLFGWDEQTLFDLAHRRDGGSYLWTALRDRAAEYPDTMAIIDDLR 695

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
            +Q +         R+         LL     +    +    +   +              
Sbjct: 696  SQTDFLRPYDLIERILTRHSGRQRLLGRLGPEAEDGVNALLSQALAYERT---------- 745

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                             +W + +   +             +  +  + ++    ++    
Sbjct: 746  --------DIPSLTGFLVWMQADDLEIKRQMGAAGNMIRVMSVHGSKGLEAPIVILPDTA 797

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
             +                             +     P     +  +  VMQ+       
Sbjct: 798  KRKPPRDDEI---------------------MRAEAGPMWKLPSAQMPDVMQAARETAQE 836

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS-RWLQRLLVLGGTDFFDNLKKRGQ 736
            +    +    +         +   +  E +    +  + ++R L   G + +D     G 
Sbjct: 837  KARNERLRLLYVALTRAEKWLIVAAAGELSKDGDSWYQMVERALREAGANPYDTGYGEGL 896

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                           P      P  P   +     +      ++      A+ +      
Sbjct: 897  RLQHGDWDGLPFHADPPVVTSAPQLPEVFRQLPPPYQPPVPTLSPSELGGAKAL----PG 952

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
               + +     RG+  H+++  L     +      N L+    D+    + L     ++ 
Sbjct: 953  DLGQDEDIAKARGSRLHSLLEHLPPADQDTWPQLANALLAGHEDTA---DLLTEATHVLT 1009

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
                  I                     +     ++     + G  DR+ +     V   
Sbjct: 1010 NPDLKAI-------------FAPDTLAEVAITADLDGR--RIHGVIDRLIVTPE-RVQAI 1053

Query: 917  DYKTGD--NPKKETAQKLIDPQLS 938
            D+K+        ET  + +  Q+ 
Sbjct: 1054 DFKSNATVPTSVETCPEGLLRQMG 1077


>gi|324990953|gb|EGC22888.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK353]
          Length = 762

 Score = 84.6 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 67/627 (10%), Positives = 170/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  ++     +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVDKIRDFASSQEISLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRERLDDYTVTELVEAVLEKTGYAAALAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  +  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPAD-ESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRAS 587


>gi|289617273|emb|CBI56040.1| unnamed protein product [Sordaria macrospora]
          Length = 784

 Score = 84.6 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 62/633 (9%), Positives = 156/633 (24%), Gaps = 83/633 (13%)

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIP 240
                 L++  + +   L   N        +  +    +     +    ++I     +  
Sbjct: 174 QQGQRDLEVCYQEYQSHLKRSNLLDYDDLLVRCVELLRKFPSCVSNIQTVLIDEYQDTNG 233

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
               LM  +A       ++   D       W +   K+      +   +           
Sbjct: 234 VQYELMRLLAQKHQRITIV--GDPDQSIYGWRSAEIKNLWRLLRDYPKTDEI-------- 283

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
             L+      + + ++S       ++              +       +  ++       
Sbjct: 284 -SLEENYRSFQAILDLS-----LLVIQQDKKRYQKVLKPVHDRGSRPVLRKLK------- 330

Query: 361 LIEADNEREEAISIAIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDI 415
                N   EA  I   +R +L  +         A++    +L+R V+  L + GI   +
Sbjct: 331 -----NAHTEAEWIVSEIRRALYMSGTMLTYNDVAILLRSASLSRHVESALGKAGIPYRM 385

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS--------RA 467
             G           +   L  I + ++  A   ++  P    G                +
Sbjct: 386 VGGFKFYERAEIKTVLDYLRVIHQPDNNDAFGRVMNVPKRGIGDGTIKNLIEEAEKSSLS 445

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
             +L +   RG++ +   +   +         +    +       +E      V L+DH+
Sbjct: 446 LYSLLVKHCRGDRTAKTKITKHAEQKISGELIRMLNGIRKKMEEATEGKSLGLVDLIDHL 505

Query: 528 LQCIT-----PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
           L  +       +     ++        +       V  L     D   ++  L   +E  
Sbjct: 506 LTALNFQNYLQVTYPDDHEQRWANVQELISLANDFVRDLDRSGEDALPEIEGLEQSKEED 565

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
            L+   + +                        +  +   E    + I     ++ L + 
Sbjct: 566 VLAQFLANVSLASDA------------------QKGEDGQESKPMVTISTIHAAKGLEWP 607

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
            + +  +  G  P   +++                E+ +   A     A     L  +  
Sbjct: 608 IVFIPAVYNGSIPHMRSEDG-------------DEERRLLYVAMTRAQAL----LYLSYP 650

Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-LDWTRKLDYTTKQPHYKRPKPFP 761
           +  N   +     L   +    + F        +       + L                
Sbjct: 651 VYNNPGSSDTRTELSSFVSSVASSFAKKGPNFERSLMRHIAKVLQRELPSEKEIFAGIPN 710

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
               +   +     K    D     + R  +  
Sbjct: 711 MSHTEDDLFPVDPDKAYKEDGQGFDSSRFKRPK 743


>gi|154252878|ref|YP_001413702.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1]
 gi|154156828|gb|ABS64045.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1]
          Length = 778

 Score = 84.6 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 83/686 (12%), Positives = 181/686 (26%), Gaps = 116/686 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A +E+R     + G     +  + +   +  +                 
Sbjct: 81  GQILAVTFTNKAAREMRDRIGALIGGVVEGMQWLGTFHALGAKI---------------- 124

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  ELA L   +     D    L  +  + +        W A+ LA  ID  +    
Sbjct: 125 -LRRHAELAGLRSDFTILDADDQMRLMKQ--IIVAEGIDEKRWPARQLASHIDGWKNRGL 181

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             + + A                       +  RL  LNA+      + ++R   EH   
Sbjct: 182 TPDKVPA-----GEAHAFANGK-GGELYAAYQARLKVLNAADFGDLLLEVLRIFQEHPEV 235

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     +++     +  A    +  +A        +   D       W      + 
Sbjct: 236 LADYQDRFKYMLVDEYQDTNVAQYLWLRLLAQKHKNICCV--GDDDQSIYGWRGAEVDNI 293

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                + +        + +L          +     +      R            T   
Sbjct: 294 LRFEKDFSG-----AKVVRLERNYRSTANILGAASGLIAANEQRL---------GKTLWT 339

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
              D   + I        +        E E+    A  LR          A++       
Sbjct: 340 EANDNEGDPIKIASYWDGEEEARAIAEEVEQLQRNAHLLR--------DMAILVRASFQM 391

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           R  +      GI   +  G             + L  + + +D +A   +V  P    G 
Sbjct: 392 REFEDRFINLGIPYRVVGGPRFYERAEIRDANAYLRLVAQPDDDLAFERIVNKPRRGLGD 451

Query: 460 PEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                + R   A      R +K      +LK                             
Sbjct: 452 VAVQTIHRLARAENTTLFRASKMLAASEELKPA--------------------------- 484

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                          L ++    +     +     T+L    L             +W  
Sbjct: 485 -----------ARRALASFIEQVDRWRALVPGMPHTELAEIILDESG------YTEMWQN 527

Query: 579 EEGKTLSSLFSKIIETGSCIKAN--AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
           ++          + E    ++ +     +++ I+ +++      + + +  + ++    +
Sbjct: 528 DKSADAPGKLENLKELVRSMEFHETLAGYLEHISLVME----MEQSDTADKINLMTLHSA 583

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F+T+ L G  EG++P   A +         +  L   E+    A      A    +
Sbjct: 584 KGLEFETVFLPGWEEGLFPHQRALD---------ESGLAGLEEERRLAYVGITRAKQRAY 634

Query: 697 LIYTRSLRENN--IPTIASRWLQRLL 720
           + +  + R +     +I SR++  L 
Sbjct: 635 ISFAANRRIHALWQSSIPSRFVDELP 660


>gi|327188053|gb|EGE55281.1| uvrD/REP helicase [Rhizobium etli CNPAF512]
          Length = 1052

 Score = 84.6 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 80/792 (10%), Positives = 174/792 (21%), Gaps = 98/792 (12%)

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATAR 244
              A   + +   E         +   +           +K     + +     S P    
Sbjct: 294  AEALTAYQDWKAERGLLDFTDQEALALEILKTPHLAARLKERVSRVFVDEFQDSSPLQLA 353

Query: 245  LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
            + + +    +        D       +     + T             Q +        +
Sbjct: 354  VFTLLGELVD--ESTWVGDPKQAIYGFRGADTELT-------------QAAFLGAGGKPE 398

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                  K   +  + +   + + +  F        ++      +        S       
Sbjct: 399  DNPVLSKSWRSRKSLVDLFNAMFTPVFERMGLPAAKHAFSDAARSDAGFDKPSAGWWWLM 458

Query: 365  DNEREEAISIAIALRMSLDE----------------NKKKSALITADRNLARRVKLELTR 408
                E+A ++A  +R  L E                     A++        R  L L+R
Sbjct: 459  GKVDEQAQALAEGIRQCLAEADNWLVEDDKHDHRPITPGDIAILCRSNTDVGRFALALSR 518

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
             G+ + +     L+ T H   + +    +    D +A+A L +     F       +  +
Sbjct: 519  AGLPVAVE-RSGLARTPHVEFVLAACRRVADATDRLALAELAR----FFADDAGSNAWLQ 573

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
             A    A    + +  I D    +  ++        V    +              D   
Sbjct: 574  AATSDDADAALRAAVPISDALDRLAGQLLNFTPAELVDAVLA--LPALLSHIESWGDT-A 630

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                 L   +    +     + S         L  +   E ++ P+L  +          
Sbjct: 631  MRFDDLEALRGFSRAYEEECAASGSPATLQGLLLALDGAEPKRPPSLASDAIQ------- 683

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                     +  +  + ++    ++ G   + K      +                 +  
Sbjct: 684  --------VMTYHGSKGLEWPMTILTGLAWESKARLFEPVAETTGELDWRNPLAERWIRF 735

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
                           +                       +  A   R  +      +   
Sbjct: 736  WPWPYGQSGKGGTIDVEVANSETGRRALQRAVEEDTRLLYVGATRARDYLIFAPPAKG-- 793

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCY-------------LDWTRKLDYTTKQPHYK 755
                  WL  L            +                   L  + +L    + P Y 
Sbjct: 794  ---PLNWLSLLNAPEAAAHVVPPQNDDNQLGVGNQNFTVNVKALATSGELTERGRLPTYV 850

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
            R +   P    P     SE         +      + L          D    G   H+I
Sbjct: 851  RARTTEPQVRPPLFLKPSEAV-----GGSWKVVERVDLGGRLPIHGIADIAALGEALHSI 905

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
            I          +             S   + N+             +++          +
Sbjct: 906  IGY-------DDPDRDRSQRLADASSILTRWNVIGFKADDALIASDRLATW-------RR 951

Query: 876  SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT--GDNPKKETAQKLI 933
                         +   +    L G  D +         I D+K+  G     E      
Sbjct: 952  GRWPVTRCIAEVPVTSPAADQLLKGRIDMLVETG-IDFAIIDHKSFPGRFELWEERAVGH 1010

Query: 934  DPQLSLEAAALK 945
             PQL+  A A++
Sbjct: 1011 APQLAAYAGAVE 1022


>gi|242240425|ref|YP_002988606.1| exonuclease V subunit gamma [Dickeya dadantii Ech703]
 gi|242132482|gb|ACS86784.1| exodeoxyribonuclease V, gamma subunit [Dickeya dadantii Ech703]
          Length = 1128

 Score = 84.6 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 118/978 (12%), Positives = 248/978 (25%), Gaps = 125/978 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++  L+   +  +   DP  P       I V +    Q L+ E        + I     
Sbjct: 11  DVLKELMVELMKRHPIRDPFEPE-----MILVQSPGMAQWLQIELANCFHIAANIQ---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L  V        L+         S      +L  L+     +    +      + L   
Sbjct: 63  PLPGVFLWDMCRRLMPDIPKESVFSKAAMSWKLMHLLPQQLAEPDFALLA----NYLRDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+  +AD+ D        W +        +           L  A    T +
Sbjct: 119 ADGRKLHQLSARVADLFDQYLIYRPDWINAWQRGAWVEDAGEAQRWQAPLWRALVAHTHQ 178

Query: 199 LVELNASSPVGYQIALMRA-EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
           L +        YQ  + R   A+    G    + I G     P   + +  +  H +  +
Sbjct: 179 LGQPEWHHSSLYQQFIGRLELADTCPPGLPERVFICGIAALPPIYLQALKALGKHIDIHL 238

Query: 258 VLPGLDCHIPTAI-------------WNTITE----------KSTNITSSNTTYSTHPQY 294
           +      +    I             W    E                +         Q 
Sbjct: 239 LFTNPCRYYWGDIQDESFLSRLKTRQWQRYREKQVTSDVRPLFRQPERADGLFGDDGEQQ 298

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNE---------------MYGRSMVISKSFLPPDTSDM 339
               LL        D   L    +E               +      I +       +  
Sbjct: 299 VGNPLLASWGKLGRDNLFLLEQLDETVGIDAFADMASDTLLASLQRDILELEDSRIIATD 358

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395
             T    ++   +      V+L    + + E   +   L   + E+     +   ++ AD
Sbjct: 359 GITLASSSRKRTLSPADRSVSLHACHSPQREVEVLHDQLLAMMAEDSTLMPRDIIVMVAD 418

Query: 396 RNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            +        +         +   +S             + SLL           +  L+
Sbjct: 419 IDSYSPFIQAVFGNAPENRYLPFALSDQRARHAHPALQAVLSLLALPDSRFTAEQVLALL 478

Query: 451 KHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
           + P LA     ++   R       VA  G +   D  +++ L+L           +    
Sbjct: 479 EVPSLAGKFAIDEEGLRHLR--MWVAESGVRWGLDDDNVRELLLPVTGQHTWRFGLTRML 536

Query: 510 SRLSEEDK-----------ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
              + E +           E + L+ +        L+     K       S++DW  L  
Sbjct: 537 LGYAMESRAGDWLGVLPYDESSGLVAELAGNLADFLMQLSQWKQRLQEARSLTDWQPLCR 596

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
             L    L +      L   E       + S  + TG           D +   ++ E +
Sbjct: 597 QLLDGFFLPDADTEAALTLIE--TQWQQILSTAMLTGYAQNVPVGTLRDELAARLESERL 654

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
             +    + +     +  R + F  + L G+N+GV+P+      F           ++  
Sbjct: 655 SQRFLAGA-INFCTLMPMRSIPFRVVCLLGMNDGVYPRVLPPLGFDLMARSRRRGDRSRR 713

Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG------TDFFDN 730
           +          + +  + L  +       +N     S  +  L+   G       D   +
Sbjct: 714 EDDRYL-FLEALLSAGQRLYISFMGHSIQDNTRRYPSVLVTELMNYIGQSYCLPGDESLD 772

Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF------------------ 772
           L    +  +                   P P   A     +                   
Sbjct: 773 LDASSERVIQALSHEHPRMPFDPAGFCAPEPESFAAEWLPAAGGKGVCQPDFDRALPERY 832

Query: 773 ------SEIKQLINDPYAVYARRILK----LDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
                  ++++    P   + +  L     LD      ++P   D  + +   +  L   
Sbjct: 833 DSDITLDDLQRFYRHPVRAFFQLRLGVYFQLDDQEMQDQEPFEVDNLSRYQMNVQLLNAL 892

Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
               +T  +   M+                  ++     +      E   +++       
Sbjct: 893 IEQGDTDALYRRMRAAG------GLPYGAFGELYWQTQQEDIRELAE---RVRGEWRP-E 942

Query: 883 VNIPAKMAIESIGIHLTG 900
            +   ++ +   G+ L+G
Sbjct: 943 THHTRELNLTINGVRLSG 960


>gi|15840032|ref|NP_335069.1| exodeoxyribonuclease V, gamma subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|13880177|gb|AAK44883.1| exodeoxyribonuclease V, gamma subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|323720986|gb|EGB30051.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           CDC1551A]
          Length = 1097

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 83/860 (9%), Positives = 203/860 (23%), Gaps = 56/860 (6%)

Query: 39  LNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS-LGDVVEEKFTADLLLSY 97
             P   A   + V  +   + L      + G        + + +     +   A++  + 
Sbjct: 25  PQPDPFAQELVLVAARGVERWLSQRLSLVLGCGPGRADGVCAGIAFRNPQSLIAEITGTL 84

Query: 98  NLNPPVSNIQRLLEL----ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
           + +P          L    A L   W   L   +         +          +A+ LA
Sbjct: 85  DDDPWSPEALAWPLLAVIDASLDEPWCRTLASHLGHFATTDAEAELRRGRR-YSVARRLA 143

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            +      +         L               L      W   +  + A  P      
Sbjct: 144 GLFASYARQR------PGLLAAWLDGDLGELPGDLAWQPPLWRALVTTVGADPPHVRHDK 197

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            +    +         + + G T       +L+  +A H +  + LP         +W  
Sbjct: 198 TIARLRDGPADLPAR-LSLFGHTRLACTDVQLLDALAVHHDLHLWLPHP----SDELWRA 252

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK-REDVKRLGNVSNEMYGRSMVISKSFL 332
           +               T  + +   LL+ L    RE  + L                  L
Sbjct: 253 LAGFQGADGLLPRRQDTSRRAAQHPLLETLGRDVRELQRALPAARATDEFLGATTKPDTL 312

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKK 388
                     +       ++      V +        +   +   L   L++      + 
Sbjct: 313 LGWLQADIAGNAPRPAGRSLSDADRSVQVHACHGPARQIDVLREVLLGLLEDDPTLQPRD 372

Query: 389 SALITADRNLARRVKLE----------LTRFGINIDISAGIPLSTT-LHSSILTSLLNAI 437
             ++  D +    + +                      A   L+ T    S+   LL   
Sbjct: 373 IVVMCPDIDTYAPLIVAGFGLGEVAGDCHPAHRLRVRLADRALTQTNPLLSVAAELLTIA 432

Query: 438 FKLNDFMAIATLVKHPLAK----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                   +  L +    +    F   +            +    +        L ++V 
Sbjct: 433 ETRATASQLLNLAQAAPVRAKFGFADDDLDTITTWVRESNIRWGFDPTHRRRYGLDTVVH 492

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
           +      +        S  S+   + A+ L D     +                +     
Sbjct: 493 NTWRLGLDRILTGVAMSEDSQAWLDTALPLDDVGSNRVELAGRLAEFVERLHHVVGGLSG 552

Query: 554 TKLTVTCLQNVCLDEHR--KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            +  V  L  +           + W   + +   +       + +       +   ++  
Sbjct: 553 ARPLVAWLDALATGIDLLTACNDGWQRAQVQREFADVLARAGSRAAPLLRLPDVRALLDA 612

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            + G   +    ++ TL +   +  R +    + L GL++GV+P+ +  +      + + 
Sbjct: 613 QLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVFPRLSHPD---GDDVLAR 668

Query: 672 LNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             +        +       A G   + L+ T +  +          +    +L   D   
Sbjct: 669 EPMTGERDIRSEDRQLLLDAIGAATQTLVITYTGADERTGQPRPPAVPLAELLDALDQTT 728

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
           +   R +  +    +                P         +          P A  + R
Sbjct: 729 SAPVRERILVTHPLQPFDRKNVTPGALLGAKPFTFDPAALAAAQAAAGKRCPPTAFISGR 788

Query: 790 ILKLDFIPHFKKDP------DRTDRGTLFHNIITELIKKRINKNTPEINHLM-----KQI 838
           +           D                   +   +    +    +++ L      +++
Sbjct: 789 LPAPPAADVTLADLLDFFKDPVKGFFRALDYTLPWDVDTVEDSIPVQVDALAEWTVGERM 848

Query: 839 IDSHFEKENLPPHIDIIWRH 858
           +       +        WR 
Sbjct: 849 LRDMLRGLHPDDAAHSEWRR 868


>gi|171057030|ref|YP_001789379.1| UvrD/REP helicase [Leptothrix cholodnii SP-6]
 gi|170774475|gb|ACB32614.1| UvrD/REP helicase [Leptothrix cholodnii SP-6]
          Length = 687

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 70/697 (10%), Positives = 180/697 (25%), Gaps = 87/697 (12%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
             +       L P  +A++T    T +A QE+R     + G ++    +I +   +    
Sbjct: 39  HKIARLLQAGLKPDQIAAIT---FTNKAAQEMRERARSLIGARAAKHLVIATFHSLGVRM 95

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
              D                          +     D +  +  ++  +     A     
Sbjct: 96  LREDGECMGLKP-----------------KFSILDADDVLGVLRDAGGTTDPKVARRWQW 138

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
             +L       + +   WE   A   +                   +     +     P+
Sbjct: 139 TISL------WKNQGLNWEQAEAAAADADEQVAARVMKLYHERLAAYQAVDFDDLIGLPL 192

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                   A  +   +     +++     +      ++  +       +     D     
Sbjct: 193 KLLQTNEAARLKWRRQLR--HVLVDEYQDTNATQYDVLKEIVGPDG--VFTAVGDDDQSI 248

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             W   T ++      +                 L +   +       +      +++  
Sbjct: 249 YGWRGATIENLKRLPQDYPT--------------LKVIPLEQNYRSTAAILNAANNVI-- 292

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
            +  P        +D+ E +   + +C  +    E    R + I        +   + K 
Sbjct: 293 -ALNPKIFQKKLWSDLGEGEPVRLVECDQEEHEAERAVARIQGIRANATGAYTGTTDWKD 351

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            A++    +L+R+++  L +  I   +S G           L + L  +   +D  A   
Sbjct: 352 FAILYRANHLSRKLEEALRKAQIPYKVSGGQSYFDRAEIKDLCAWLRLLVNQDDDPAFLR 411

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELV-ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            V  P    G               V              L +  +  +       +   
Sbjct: 412 AVTTPKRGIGHTTLGALGEFAGKWKVSLFEALFKESLAAALSAKAIGSLHEFGRYVNDLE 471

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
            ++R +   +E   +L++        L      +    G  +           +  V   
Sbjct: 472 HRARHTVGAEEAKPMLMEW-------LKDIGYEQFLYDGEENEKVAAARWNNVVDFVDWI 524

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
             R    +                 +  + ++      +D+   +    ++  + ++   
Sbjct: 525 AKRCGGQVE---------------ADGSAQVEIERKSVLDVAQTISVILSLAERGDEQDM 569

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
           + +     S+ L +  ++L  +NEG  P    +               TAE+   +    
Sbjct: 570 VTLSTLHASKGLEWPHVVLVSINEGTLPFQRDEEEM------------TAERLEEERRLM 617

Query: 688 FEMANGTRHLIYTRSLRENNIPTI-----ASRWLQRL 719
           +      R+ +   +L              SR++  +
Sbjct: 618 YVGITRARNTLLVSTLLRQKRGREVRKALPSRFIAEM 654


>gi|83858903|ref|ZP_00952425.1| DNA helicase II [Oceanicaulis alexandrii HTCC2633]
 gi|83853726|gb|EAP91578.1| DNA helicase II [Oceanicaulis alexandrii HTCC2633]
          Length = 766

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 66/687 (9%), Positives = 172/687 (25%), Gaps = 110/687 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           ++     T +A +E++    +I G++   LP + +   +  +       L   L    + 
Sbjct: 71  NILAVTFTNKAAREMKERVGKIIGEQVEGLPWLGTFHSIAAQILRRHAEL-VGLKSTFTI 129

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +    +L RL+           K   P                   LA +ID  +   + 
Sbjct: 130 LDTDDQL-RLLKQILEAEGIDTKRWTPRH-----------------LASLIDGWKNRAQT 171

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            E +       +      A    K+        L   +    + + I + +   + L   
Sbjct: 172 PERIPEEDKWSFADG--KAQKLYKLYQDRL-SVLNACDFGDLLLHNITIFQNHDDVLADF 228

Query: 226 TK--GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            +    +++     +  A    +  +A        +   D       W      +     
Sbjct: 229 HRKFRYLLVDEYQDTNVAQYLWLRLLARGSGNVCCV--GDDDQSIYGWRGAEVDNILRFE 286

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +      P  ++ +L          +     +      R                    
Sbjct: 287 QDF-----PGATVIRLERNYRSTGHILGAAAGLITANKAR-------------------- 321

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARR 401
            L   +    +    V +    +   EA  +A  +   +    +    A++       R 
Sbjct: 322 -LGKTLWTEDQAGHKVQVSGLWDGEAEARFVADEIEAHIKGGGRHSDIAVLVRASWQMRA 380

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            +      G+   +  G             + L  +  L+D +A   +V  P        
Sbjct: 381 FEDRFIMLGLPYKVIGGPRFFERAEIRDALAYLRLVRSLSDDLAFERVVNTP-------- 432

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                          +       +  +         +      +      +  + +   +
Sbjct: 433 ---------------KRGVGDTSVQKIAMAARGAQVSMAEAARLMTQTDEIKGKGRTGLI 477

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             +  + +      T + ++ +                        +      +W E++ 
Sbjct: 478 AFLRDLERWAEQAETMRHDELAEVIL--------------------DESGYTAMWREDKS 517

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
              +     + E    +       ++     I   +   + E    + I+    ++ L F
Sbjct: 518 PQAAGRLDNLKELVRSMGEFDS--LEAFLEHIALVSDADRTENGDEVSIMTLHAAKGLEF 575

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
             + L G  E V+P   + +         +      E+    A      A     + +T 
Sbjct: 576 PLVFLPGWEETVFPSQRSMD---------EGGTAALEEERRLAYVGITRARERAVISFTA 626

Query: 702 SLRENNI--PTIASRWLQRLLVLGGTD 726
           +          + SR++  +       
Sbjct: 627 NRMIFGRWQSVLPSRFIDEMPAEHCEA 653


>gi|209542394|ref|YP_002274623.1| UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530071|gb|ACI50008.1| UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 760

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 81/727 (11%), Positives = 181/727 (24%), Gaps = 124/727 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKK--STILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            +     T +A +E+R     + G+      L    +   +              L    
Sbjct: 86  QILAVTFTNKAAREMRERIGALLGEPVEGLWL---GTFHALCARMLRRHAEY-VGLGSGF 141

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           + +    +L RL+      L    K   P+  L +                 I   +   
Sbjct: 142 TILDTDDQL-RLLKQVIEPLRIDTKRWPPQGILGV-----------------IQRWKDRG 183

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              E +   ++  +                 +  RLV+LNA       + +         
Sbjct: 184 LTPERVTPAEDCDFAGGQCR------PIYAAYQARLVQLNACDFGDLMLHVTEILRTRPD 237

Query: 224 KGTK-----GPIIIAGSTGSIPATARLMSTVA-NHPNGAIVLPGLDCHIPTAIWNTITEK 277
              +       I++     +       +  +A      A +    D       W     +
Sbjct: 238 VLAQYHRLFRYILVDEYQDTNTIQYLWLRLLAQREGQPANICCVGDDDQSIYSWRGAEVE 297

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +      P  ++ +L        + +     +     GR              
Sbjct: 298 NILRFERDF-----PGAAVVRLERNYRSTAQILGAASGLIAHNDGR-------------- 338

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITAD 395
                     +          V +    +  +EA  +   +           + A++   
Sbjct: 339 -----LGKTLRPGREDASGEKVRVASVWDSDDEARLVGEEVERLRAGGHSLAEIAILVRA 393

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
               R  +  L   G+   +  G+            + +  + +  D +A   ++  P  
Sbjct: 394 GFQTRAFEERLITLGLPYRVVGGLRFYERSEIRDAMAYMRVLNQPADDLAFERIINVPRR 453

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G                           M L + V+D IA                  
Sbjct: 454 GIGAAAMQKFHVAAR------------EGQMPLAAAVMDLIARGALKGRA---------- 491

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                    + +   +  L   +         + +    + +                 L
Sbjct: 492 --------REQMTALMACLARGREALPREGHVVVVETLLEESGYIDMWKADTSPEAPGRL 543

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +E     + F            +   +++ +  +++ E    +   +  L I+    
Sbjct: 544 DNLKELVRALADFE-----------SLGGFLEHVALVMENE----ENAGAERLSIMTLHG 588

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L FDT+ L G  EGV+P     +         +  LK  E+    A      A    
Sbjct: 589 AKGLEFDTVFLPGWEEGVFPSQRTLD---------EGGLKGLEEERRLAYVGITRA--RH 637

Query: 696 HLIYTRSLRENN----IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             + + +            I SR+++ L     T      + R + +      L  T   
Sbjct: 638 RAVISHAASRRIYGNWQSAIPSRFIEELPAEHVTTTGGAAQARSRTFGH--APLSSTAFP 695

Query: 752 PHYKRPK 758
              +RP+
Sbjct: 696 VMARRPR 702


>gi|15607771|ref|NP_215145.1| exonuclease V gamma chain [Mycobacterium tuberculosis H37Rv]
 gi|148660403|ref|YP_001281926.1| exodeoxyribonuclease V subunit gamma [Mycobacterium tuberculosis
           H37Ra]
 gi|167969059|ref|ZP_02551336.1| exodeoxyribonuclease V subunit gamma [Mycobacterium tuberculosis
           H37Ra]
 gi|215429464|ref|ZP_03427383.1| exodeoxyribonuclease V subunit gamma [Mycobacterium tuberculosis
           EAS054]
 gi|219556473|ref|ZP_03535549.1| exodeoxyribonuclease V subunit gamma [Mycobacterium tuberculosis
           T17]
 gi|254363584|ref|ZP_04979630.1| exonuclease V (gamma chain) recC [Mycobacterium tuberculosis str.
           Haarlem]
 gi|260199636|ref|ZP_05767127.1| exodeoxyribonuclease V subunit gamma [Mycobacterium tuberculosis
           T46]
 gi|289442023|ref|ZP_06431767.1| exodeoxyribonuclease V, gamma subunit [Mycobacterium tuberculosis
           T46]
 gi|289568568|ref|ZP_06448795.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis T17]
 gi|289752673|ref|ZP_06512051.1| exonuclease subunit V gamma [Mycobacterium tuberculosis EAS054]
 gi|306774739|ref|ZP_07413076.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu001]
 gi|306781531|ref|ZP_07419868.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu002]
 gi|306783277|ref|ZP_07421599.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu003]
 gi|306787646|ref|ZP_07425968.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu004]
 gi|306794412|ref|ZP_07432714.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu005]
 gi|306796382|ref|ZP_07434684.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu006]
 gi|306802242|ref|ZP_07438910.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu008]
 gi|306806450|ref|ZP_07443118.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu007]
 gi|306966650|ref|ZP_07479311.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu009]
 gi|306970843|ref|ZP_07483504.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu010]
 gi|8134454|sp|P96921|EX5C_MYCTU RecName: Full=Exodeoxyribonuclease V gamma chain
 gi|1877368|emb|CAB07120.1| PROBABLE EXONUCLEASE V (GAMMA CHAIN) RECC (EXODEOXYRIBONUCLEASE V
           GAMMA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE)
           [Mycobacterium tuberculosis H37Rv]
 gi|134149098|gb|EBA41143.1| exonuclease V (gamma chain) recC [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148504555|gb|ABQ72364.1| exodeoxyribonuclease V subunit gamma [Mycobacterium tuberculosis
           H37Ra]
 gi|289414942|gb|EFD12182.1| exodeoxyribonuclease V, gamma subunit [Mycobacterium tuberculosis
           T46]
 gi|289542322|gb|EFD45970.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis T17]
 gi|289693260|gb|EFD60689.1| exonuclease subunit V gamma [Mycobacterium tuberculosis EAS054]
 gi|308216632|gb|EFO76031.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu001]
 gi|308325700|gb|EFP14551.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu002]
 gi|308331938|gb|EFP20789.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu003]
 gi|308335723|gb|EFP24574.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu004]
 gi|308337302|gb|EFP26153.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu005]
 gi|308343159|gb|EFP32010.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu006]
 gi|308347098|gb|EFP35949.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu007]
 gi|308351041|gb|EFP39892.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu008]
 gi|308355673|gb|EFP44524.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu009]
 gi|308359628|gb|EFP48479.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           SUMu010]
          Length = 1097

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 83/860 (9%), Positives = 203/860 (23%), Gaps = 56/860 (6%)

Query: 39  LNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS-LGDVVEEKFTADLLLSY 97
             P   A   + V  +   + L      + G        + + +     +   A++  + 
Sbjct: 25  PQPDPFAQELVLVAARGVERWLSQRLSLVLGCGPGRADGVCAGIAFRNPQSLIAEITGTL 84

Query: 98  NLNPPVSNIQRLLEL----ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
           + +P          L    A L   W   L   +         +          +A+ LA
Sbjct: 85  DDDPWSPEALAWPLLAVIDASLDEPWCRTLASHLGHFATTDAEAELRRGRR-YSVARRLA 143

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            +      +         L               L      W   +  + A  P      
Sbjct: 144 GLFASYARQR------PGLLAAWLDGDLGELPGDLAWQPPLWRALVTTVGADPPHVRHDK 197

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            +    +         + + G T       +L+  +A H +  + LP         +W  
Sbjct: 198 TIARLRDGPADLPAR-LSLFGHTRLACTDVQLLDALAVHHDLHLWLPHP----SDELWRA 252

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK-REDVKRLGNVSNEMYGRSMVISKSFL 332
           +               T  + +   LL+ L    RE  + L                  L
Sbjct: 253 LAGFQGADGLLPRRQDTSRRAAQHPLLETLGRDVRELQRALPAARATDEFLGATTKPDTL 312

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKK 388
                     +       ++      V +        +   +   L   L++      + 
Sbjct: 313 LGWLQADIAGNAPRPAGRSLSDADRSVQVHACHGPARQIDVLREVLLGLLEDDPTLQPRD 372

Query: 389 SALITADRNLARRVKLE----------LTRFGINIDISAGIPLSTT-LHSSILTSLLNAI 437
             ++  D +    + +                      A   L+ T    S+   LL   
Sbjct: 373 IVVMCPDIDTYAPLIVAGFGLGEVAGDCHPAHRLRVRLADRALTQTNPLLSVAAELLTIA 432

Query: 438 FKLNDFMAIATLVKHPLAK----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                   +  L +    +    F   +            +    +        L ++V 
Sbjct: 433 ETRATASQLLNLAQAAPVRAKFGFADDDLDTITTWVRESNIRWGFDPTHRRRYGLDTVVH 492

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
           +      +        S  S+   + A+ L D     +                +     
Sbjct: 493 NTWRFGLDRILTGVAMSEDSQAWLDTALPLDDVGSNRVELAGRLAEFVERLHHVVGGLSG 552

Query: 554 TKLTVTCLQNVCLDEHR--KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            +  V  L  +           + W   + +   +       + +       +   ++  
Sbjct: 553 ARPLVAWLDALATGIDLLTACNDGWQRAQVQREFADVLARAGSRAAPLLRLPDVRALLDA 612

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            + G   +    ++ TL +   +  R +    + L GL++GV+P+ +  +      + + 
Sbjct: 613 QLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVFPRLSHPD---GDDVLAR 668

Query: 672 LNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             +        +       A G   + L+ T +  +          +    +L   D   
Sbjct: 669 EPMTGERDIRSEDRQLLLDAIGAATQTLVITYTGADERTGQPRPPAVPLAELLDALDQTT 728

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
           +   R +  +    +                P         +          P A  + R
Sbjct: 729 SAPVRERILVTHPLQPFDRKNVTPGALLGAKPFTFDPAALAAAQAAAGKRCPPTAFISGR 788

Query: 790 ILKLDFIPHFKKDP------DRTDRGTLFHNIITELIKKRINKNTPEINHLM-----KQI 838
           +           D                   +   +    +    +++ L      +++
Sbjct: 789 LPAPPAADVTLADLLDFFKDPVKGFFRALDYTLPWDVDTVEDSIPVQVDALAEWTVGERM 848

Query: 839 IDSHFEKENLPPHIDIIWRH 858
           +       +        WR 
Sbjct: 849 LRDMLRGLHPDDAAHSEWRR 868


>gi|296137088|ref|YP_003644330.1| exodeoxyribonuclease V, gamma subunit [Thiomonas intermedia K12]
 gi|295797210|gb|ADG32000.1| exodeoxyribonuclease V, gamma subunit [Thiomonas intermedia K12]
          Length = 1173

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 105/933 (11%), Positives = 215/933 (23%), Gaps = 113/933 (12%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST----------- 73
           LL   L+E     PL P  L    I V +  A + L+       G  +            
Sbjct: 19  LLRDALLEWLAQQPLAP--LEEEVILVQSNGAAEWLKMALAAQGGICAATRVELPGRFLW 76

Query: 74  -----ILPIIKSLGD-------VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
                +L    +          +              L+P     +     A     +  
Sbjct: 77  RTYRQVLGRAATPSQSPLDKPLLTWRLMRLLGAPGAELHPARPPWESRKLGAA--QRFLE 134

Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED---------LHAL 172
                     P             + LA+ LAD+ D  +     W D         + AL
Sbjct: 135 GGTLDADVCAPLLQYLQGQDLLRRLQLAQRLADLYDQYQIYRDDWLDAWAQGRDVLIDAL 194

Query: 173 KNEKYGMWWLLAADFL-KIASKYWTERLVELNASSPVGYQIALM---RAEAEHLMKGTKG 228
                         +L +      +E   +   +      +  +      A+        
Sbjct: 195 GRATPLPEDQRWQAWLWRRVLAELSEAERQSTRAQVQRAMLQALNTADIAADPTRPALPR 254

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            +++ G++         +  ++ +    I LP    +    I                  
Sbjct: 255 RVVLFGASHLPTVVLDALVALSRYVQVLIALPNPCRYHWADIIEGRELLRAAPARRPLRA 314

Query: 289 STHPQYSL-------AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL--------- 332
               Q SL         LL     +  D  R  +  +E    +                 
Sbjct: 315 GDLAQVSLEVMHAHAHPLLAAWGRQGRDFMRQLDAFDERANAADRPGLPRHDLFDDAPGD 374

Query: 333 ----PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--- 385
                   +      + E+    I      V      + + E   +   L   L +    
Sbjct: 375 TLLEQMQAAIRDLLPLPEHSRTLISAADRSVVFHIGHSAQREVEILHDQLLHLLAQPSGG 434

Query: 386 ----KKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLL 434
                +   ++T D          +           I  DI+     +T      L  LL
Sbjct: 435 RPLRPRDIVVMTPDIAPFAPAIRAVFGQYPPGDERFIPFDIADLSARATEPLLLALDWLL 494

Query: 435 NAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSY-------DI 485
               +      I+ L+  P    +FG   +   R    +    +R   +           
Sbjct: 495 RLPQERILASDISALLDVPAIARRFGLRPEDRPRLTQWIVGAGVRWGLDVDHRAHLGLGA 554

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              ++     +                +    +    L   ++  +  L+        T 
Sbjct: 555 CGEQNSWRFGLRRMLLGYAGAGEDGFENIVPFDEIGGLDAALVGPLADLLDVLQAWWRTA 614

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
              +           L +                    LS+                   
Sbjct: 615 LQNATPGQWAQYARDLLDAISLPQDLRERETRARLDDALSTWLDHCAAAQFDEAVPLQVL 674

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            +     +D      +      +     +  R + F+ + L G+NEG +P+ +  + F  
Sbjct: 675 RESWLSGLDEAAGGGRFLAG-GVTFCTLMPLRAIPFEVVCLLGMNEGDYPRRSPHSDFDL 733

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVL 722
                        +         E     R  L  + + R   +N     S  + +L   
Sbjct: 734 LHQPGQYRPGDRARREDDRYLMLEALLSARRMLYVSWAGRSPRDNTEQPPSVLVAQLRDY 793

Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP----------------------- 759
               +    +            L   +++                               
Sbjct: 794 LAAGWQGEGQGDLLAQRTTVHPLQPFSRRYFEGDAALFTYAREWRQAHGGVAENGTGNGN 853

Query: 760 -FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL--DFIPHFKKDPDRTDRGTLFHNII 816
              P E      S  ++ + + +P   + R  L +  D +     D      G   H+++
Sbjct: 854 GPMPFEPLTEPLSLQQLARFLKNPVKAFFRTRLDVVFDELQTQDDDEVFALDGLDRHSLL 913

Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
           + LI          I   + + +        LP
Sbjct: 914 SHLIDDPQAAVYEGIEAAVARRVRQLQGSGALP 946


>gi|296129851|ref|YP_003637101.1| RecB family exonuclease-like protein [Cellulomonas flavigena DSM
           20109]
 gi|296021666|gb|ADG74902.1| RecB family exonuclease-like protein [Cellulomonas flavigena DSM
           20109]
          Length = 284

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 74/250 (29%), Gaps = 21/250 (8%)

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                    +    S S     +  P     R + +L              RGTL H ++
Sbjct: 3   AAADVGPAPRMPGLSPSRANDFLQCPLLFRYRVVDRLPEP-----ASPAAARGTLVHAVL 57

Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLP-------PHIDIIWRHLFHKISHSFLE 869
             L      + T +          +  ++E+               +     ++  ++  
Sbjct: 58  EHLFDLPAPERTLDAARAALPERWAQVQQEDPRCLDLHADDAERAAFLAEAERLLTTWFT 117

Query: 870 HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
            E+  +  +E     +  +  +E     L G  DR+D+  +G+V + DYKTG +P+    
Sbjct: 118 LEDPTR--LEPRARELRVEHDLEDGP-RLRGVVDRVDVAPNGWVRVVDYKTGRSPRAGFE 174

Query: 930 QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
              +  Q+   A  +               L    L     +     + + ++ +     
Sbjct: 175 SSAL-FQMRFYAYVVWR-----TRGVLPKRLQLTYLGDGVVVSHEPTEAEMHTLEARVRS 228

Query: 990 SLKNLIEIVT 999
               + +   
Sbjct: 229 IWAGIEDTAR 238


>gi|169831771|ref|YP_001717753.1| ATP-dependent DNA helicase PcrA [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638615|gb|ACA60121.1| ATP-dependent DNA helicase PcrA [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 718

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 73/687 (10%), Positives = 173/687 (25%), Gaps = 116/687 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV-- 103
            +     T RA +E++     +       L  + +           ++         V  
Sbjct: 59  RILAITFTNRAAREMKERVASLVPHAVDDL-WVMTFHAACLRILRREIEKLGYSKNFVIY 117

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               +   +   +     +       ++  +      +                      
Sbjct: 118 DEADQQTVIKDCLKELNLEPRQHPPAMFSAAISWQKNAL--------------------- 156

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-- 221
               +      +++        +        +  RL   NA          +R   E   
Sbjct: 157 VGPAEFAGAAYDQH-------QELTARVYAAYQARLERNNALDFDDLLFLAVRLFREFPP 209

Query: 222 ---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +  A   L++ +A       V+   D       W     ++
Sbjct: 210 VLEQYRRRFLHLLVDEYQDTNHAQYVLVNLLAQTHRNLTVV--GDPDQCIYGWRGADLRN 267

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       +P   + KL          ++            +  + +        +
Sbjct: 268 ILNFE-----RDYPDARVVKLEQNYRSTGRILEA-----------ANHVIRFNRHRKEKE 311

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADR 396
           +                     L +A +ER EA  +A  +R    +  + +  A+     
Sbjct: 312 LWTARGAGEAPV----------LHQARDERAEARFVAREIRRLRAQGRSYRDFAVFYRTH 361

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++ EL R G+   I  G+          L + L  I   +D +A+  ++  P   
Sbjct: 362 AQSRVLEDELLRHGVPYTIIGGVKFYDRKEIKDLLAYLKLIVNPDDDVALTRIINVP--- 418

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                               R       ++   + V                    +  +
Sbjct: 419 --------------------RRGVGKASLVKFFAYV-----------RESSVACADALRE 447

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            +    L   + + +  L           G ++      L  +        E        
Sbjct: 448 ADRIRGLSAGVREAMGALGEQLARWREREGGVTGLTEQVLEESGYLTALEAERTVEARTR 507

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            E   + LS      ++ G           + +  L     +     +SS + ++    +
Sbjct: 508 MENLSEFLSVTREFDLQRGG-------TLAEFLNDLALYTDLDRFDGESSQVTLMTLHSA 560

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + L G+ EGV+P   A +  +    +  L      +   +             
Sbjct: 561 KGLEFPVVFLTGMEEGVFPHTRAFSEPVEMEEERRLCYVGITRARERLFLTLAE------ 614

Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLG 723
              +R L  N    + SR+L+ +    
Sbjct: 615 ---SRLLYGNVYYGVPSRFLREIPPEL 638


>gi|215428676|ref|ZP_03426595.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T92]
          Length = 353

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 78/331 (23%), Gaps = 21/331 (6%)

Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
               +  +           A  L +++           +L  L   +    W+ A  F +
Sbjct: 30  AATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRCRGRPEWIAAGQFAQ 89

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
              +              V      +   A            + G+     A    +   
Sbjct: 90  RYEQ--------------VMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAA 135

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA--KLLDFLDIKR 307
                  +++       P A        +    +          +     +    L    
Sbjct: 136 ERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDP 195

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFSDVALIEADN 366
                    S  +                   R     +  +I         V +  A +
Sbjct: 196 PPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGS 255

Query: 367 EREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISA-GIPLS 422
              EA  IA ALR +   +       A+I      A R+   L   G+ +   A G PLS
Sbjct: 256 AHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGGPLS 315

Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  L ++L A     D      L+  P
Sbjct: 316 AEPAVRALLTVLEATADGLDGDQALLLLTGP 346


>gi|144897146|emb|CAM74010.1| helicase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 291

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 96/273 (35%), Gaps = 34/273 (12%)

Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
           + R+ I ID SAG PL  T   + L  L  A+       A   L KHPLA  G       
Sbjct: 1   MERWDIAIDDSAGRPLMLTEPGAFLRLLAEAVADGFPPHATLALCKHPLAAAGLDPIRFR 60

Query: 466 RAKNALELVAL-RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                LE   + RG + +  +  L++                                 +
Sbjct: 61  ALTRRLETKEILRGPRPAPGLGGLRAACAGDARLIG----------------------WL 98

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK-LPNLWFEEEGKT 583
           D +   + P +T    +     +  ++D  +  +   + +  D        LW  E G+ 
Sbjct: 99  DALESALAPFITLMAAE-----SAPLADLLRAHMEAAEALAADHANPGPARLWRGEAGEA 153

Query: 584 LSSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           L+     + E  + I           +  +   L+ G  V+P   +   LFI G +E+RL
Sbjct: 154 LARFAGDLAEALATIGAMFTPLPPRFYPALFDELLSGRVVRPHWGRHPRLFIWGPMEARL 213

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            + D +IL GLNEG WP     +P         
Sbjct: 214 QHADVMILAGLNEGTWPGKAEADPVDEPAHAQR 246


>gi|311067549|ref|YP_003972472.1| ATP-dependent deoxyribonuclease subunit A [Bacillus atrophaeus 1942]
 gi|310868066|gb|ADP31541.1| ATP-dependent deoxyribonuclease subunit A [Bacillus atrophaeus 1942]
          Length = 1234

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 100/836 (11%), Positives = 212/836 (25%), Gaps = 122/836 (14%)

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITE 276
            EA    +     +++     +      ++  V + P  +  +    D       +     
Sbjct: 392  EAAAYYQEQFQEVLVDEYQDTNLVQEAILQLVTSGPEASGNLFMVGDVKQSIYRFRLAEP 451

Query: 277  KSTNITSSNTTYSTHPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
                      T +                  D LD      K+L              ++
Sbjct: 452  LLFLSKYKRFTETGEGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGK-VGEVDYDEQAE 510

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL------- 382
              L         T+     I   ++  +     E +  + EA +IA  ++  +       
Sbjct: 511  LKLGASYPPNDQTETELLLIDRAEEKEASEETEELETVQLEAKAIAKQIQKLVSSPYKVY 570

Query: 383  --------DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                    +   +   ++      A ++  EL   GI +  +        +  S+  S L
Sbjct: 571  DGKSKTHSNIRYRDIVILLRSMPWAPQIMEELKAQGIPVYANLTSGYFEAVEVSVAISAL 630

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
              I      + +A++++ P+      E  L R  N                     L   
Sbjct: 631  KVIDNPYQDIPLASVLRSPIVGADENELSLIRMHNKKAPFYEAMKDYLSGGDRNDELYQK 690

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
              A       +  W+S          +  V    + +  +      K        + D  
Sbjct: 691  LNAFF---ELLQKWRSFSKNHSVSELIWEVYRDSKYMDYVGGMPGGKQRQANLRVLYDRA 747

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            +   +          R +  +    +    +   S+  +    +  ++ + ++       
Sbjct: 748  RQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFAA 807

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNF--------------------------------D 642
            G      +   +  ++L         F                                 
Sbjct: 808  GLGRNFNMMDLNKSYLLDKELGFGTKFIHPEWRLSYPTLPLIAMKKKMRRELLSEELRVL 867

Query: 643  TLILGGLNEG------VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTR 695
             + L    E          +      + +   Q D  L   E+Y  +   DF   A    
Sbjct: 868  YVALTRAKEKLFLVGSCKNREKQLAKWQASASQPDWLLPDFERYQAKTYLDFIGPALIRH 927

Query: 696  HLIYTRSLRENNIPTIASRWLQRL---LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ- 751
              + T +L+        S    R    +V       D+L++R +        +       
Sbjct: 928  RDMGTDALQGLASQADISEHPARFNIQMVSAQDLLDDDLEERQEEKSGRLDAIRRGEPVS 987

Query: 752  ----------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL-------- 793
                             P+  +       S SEIK+          R +++         
Sbjct: 988  GSFEFEEQARQRLSWRYPYHDVTKIRTKQSVSEIKRKKEYEDEYSGRSLIRPADGNMLYR 1047

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                  KK     ++GT  H ++  +                ++I+   +EKE L     
Sbjct: 1048 RPAFMMKKGLTAAEKGTAMHTVMQHIPLTHAP-----SKEEAERIVKRLYEKELLTEDQQ 1102

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGFA 902
             +      +I   F     +     + I   +P  MA+               I + G  
Sbjct: 1103 AVI--DLEEIVQFFHTEIGEKLIGAKWINREVPFSMALSAQDAFLDTESKDEPILVQGII 1160

Query: 903  DRIDLLKSGFVDITDYKT------------GDNPKKETAQKLIDPQLSLEAAALKA 946
            D +     G + + DYKT            G  P  +      + Q+ L   A++ 
Sbjct: 1161 DCLYETDEG-LFLLDYKTDRIEGKFQHGFEGAAPILKKR---YETQIELYTKAVEQ 1212


>gi|254696353|ref|ZP_05158181.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 467

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/436 (12%), Positives = 101/436 (23%), Gaps = 40/436 (9%)

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
           A      +L  + P      ++       +           L+ +          L    
Sbjct: 7   ADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEAAAPEIKRELDQGR 66

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
           +   + ++ +     G+ +             L+D  +      ++  L           
Sbjct: 67  DEVRIMTMHAAKGLEGAVVF------------LVDPGSAVWTGSRAPKLIPYDFQGDGPP 114

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
               L     +              +R  +    L        +         GTR    
Sbjct: 115 VKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRLIICGYRGTRESGE 174

Query: 700 TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
           T      +     S      +       +    +      +  +    +     +   +P
Sbjct: 175 TWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGATSLPPLPHDYRQP 234

Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-RTDRGTLFHNIITE 818
                  PR  + S    LI           L    +      P     RGT  H ++  
Sbjct: 235 MKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFALRRGTAIHMLLQY 292

Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
           L      K        + +I                       ++      H        
Sbjct: 293 LPDVAPEKREHLAADYLARIAAD---------------WPDAERLKAWQSVHAILDDPRF 337

Query: 879 EKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETA 929
             +F         +   + I      ++G  DRI + +S  V I DYKT   P K  E  
Sbjct: 338 GPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDYKTNRPPPKTLEAV 396

Query: 930 QKLIDPQLSLEAAALK 945
                 QL+L    L+
Sbjct: 397 PSAYRAQLALYRELLR 412


>gi|324995484|gb|EGC27396.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK678]
          Length = 762

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 67/627 (10%), Positives = 168/627 (26%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  ++     +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRERLDDFTVTELVEAVLEKTGYAAALAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  +       +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPADET-GLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRAS 587


>gi|319792357|ref|YP_004153997.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315594820|gb|ADU35886.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 808

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/551 (9%), Positives = 131/551 (23%), Gaps = 62/551 (11%)

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATAR 244
              + + E+             +       ++       +     I+I     +      
Sbjct: 182 ELYQLYEEQCQREGVVDFGELMLRSYELLRDNDPVREHYQRRFRHILIDEFQDTNRLQYA 241

Query: 245 LMSTVANHPNGAIVLPGL--------DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
            +  ++ +  G    P          D       +      +              Q+ +
Sbjct: 242 WIKMLSGNTVGGQFTPNPNNSVIAVGDDDQSIYAFRGARVGNMADFVREFDV----QHQI 297

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
                                  +       S      +     N   L   +   Q   
Sbjct: 298 K----------------------LEQNYRSYSNILDSANELISHNKKRLGKNLRTDQGPG 335

Query: 357 SDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINID 414
             V + E+  +  EA  +   +R  + +  ++K+ A++      +R ++  L    +   
Sbjct: 336 EPVRVYESPTDLAEAQWMVEEMRQLVRDGFDRKEIAVLYRSNAQSRVIETALFNASVPYR 395

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
           +  G+            + L  +   +D  +   +V  P    G       +        
Sbjct: 396 VYGGLRFFERAEIKHALAYLRLLENKDDDTSFLRVVNFPPRGIGARTLETLQDAARAAGR 455

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
           +L    +        +L                   R   E       LV+H        
Sbjct: 456 SLHDAVSVVGGKAGANLTGFVAKIDVLREQTQGVSLREIIELVLDHSGLVEHYKADREGA 515

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
              +          S     +        + +DE R+ P     +       +  + +  
Sbjct: 516 DRLENLDELVNAAESFV-TQEGFGRDAVALPVDELRQSPAS---QGIDPTRPVLDEPLAP 571

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
            +            +T                 + ++    ++ L FD + + G+ EG++
Sbjct: 572 DAETGETLSPLAAFLTHAALESGDNQAQAGQDAVQLMTVHAAKGLEFDCVFITGMEEGLF 631

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL----RENNIPT 710
           P   + + F S   +  L                 +    + L  + S            
Sbjct: 632 PHENSMSDFESLEEERRL-------------MYVAITRARKRLYLSHSQTRMLHGQTRYN 678

Query: 711 IASRWLQRLLV 721
           + SR+   L  
Sbjct: 679 VKSRFFDELPE 689


>gi|239986596|ref|ZP_04707260.1| hypothetical protein SrosN1_04740 [Streptomyces roseosporus NRRL
            11379]
          Length = 281

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 74/253 (29%), Gaps = 32/253 (12%)

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             P     R I KL          +   RGTL H ++  L        T      +     
Sbjct: 3    CPLLYRFRVIDKLPEK-----PSEAATRGTLVHAVLERLFDVPAADRTAPRARALIPGQW 57

Query: 841  SHFEKENLP----------PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                +                    W     ++   +   E+  +  +E     +  +  
Sbjct: 58   DRLLESKPELSDLFAGDSEGERLTRWLGEAERLVDRWFSLEDPTR--LEPAEREMFVETE 115

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            +ES G+ L G  DR+D+  SG V I DYKTG  P+          Q++  A  +      
Sbjct: 116  LES-GLRLRGVIDRVDIAPSGEVRIVDYKTGKAPRP-EYSDGPLFQMTFYALVIWR---- 169

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
             +       L  + L     +                E+  + L+ +   ++   +    
Sbjct: 170  -LKGVVPRRLQLVYLGSGDVMTYDPVVAD-------LERVERKLLALWDAIRLATETGDW 221

Query: 1011 HLRLSEKSNIQSE 1023
              R ++      +
Sbjct: 222  RPRPTK-LCGWCD 233


>gi|145596329|ref|YP_001160626.1| ATP-dependent DNA helicase PcrA [Salinispora tropica CNB-440]
 gi|145305666|gb|ABP56248.1| ATP-dependent DNA helicase PcrA [Salinispora tropica CNB-440]
          Length = 795

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 79/752 (10%), Positives = 192/752 (25%), Gaps = 102/752 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTAD-LLLSYNLNPPV 103
             +     T +A  E++    ++ G ++ ++  + +          A+           +
Sbjct: 81  GEIIAITFTNKAAGEMKERVAQLVGPRARLM-WVSTFHSACVRILRAEHEHAGLKSTFSI 139

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            +      L +L+    +  P                    A  LA  ++++ + +    
Sbjct: 140 YDADDSRRLMQLVARELDLDPKRYP----------------ARGLAAQVSNLKNEL---- 179

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              E+  A                L  A   +  RL E +A       +  +     H  
Sbjct: 180 VDPEEFAARAKGPN-------ERALAEAYTLYQRRLREAHALDFDDLIMTTVHLLQSHPH 232

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG---AIVLPGLDCHIPTAIWNTIT 275
                +     +++     +  A   L+  + +  +G   A +    D       +   T
Sbjct: 233 VAETYRRRFRHVLVDEYQDTNHAQYVLIKELVSGTDGLDPAELCVVGDADQSIYAFRGAT 292

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++      + T +             L+      + + N +N +  R+           
Sbjct: 293 IRNILEFERDFTDARTIL---------LEQNYRSTQTILNAANAVIDRN----------- 332

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALI 392
                 T     ++ +       +    AD E  EA  +A     L    D      A+ 
Sbjct: 333 ------TSRKPKRLWSEAGTGDPIVGYVADTEHTEADWVAREIDRLVDDGDTRPGDVAVF 386

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R  +    R G+   +  G+            + L A+   +D +++  ++  
Sbjct: 387 YRTNAQSRVFEEVFIRVGLPYKVVGGVRFYERKEVRDALAYLRALVNEDDTVSLRRVLNT 446

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P    G   +    A  + + ++                                 ++R 
Sbjct: 447 PRRGIGDRAEACVEALASRDRISFGAALR---------------------------RARD 479

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
           +      A   +   +  +  +              ++ + +       +++   +  ++
Sbjct: 480 APGISTRAANGIAEFVALLDGVREVAETSAPEEVLEALLNRSGYLTELEESLDPQDAGRV 539

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
            NL          +   + +         A     +       +      E    + ++ 
Sbjct: 540 DNLQELVSVAREYTERVEGLGEEGERATVAGFLEQVALVADADQLPADDPEHQGVVTLMT 599

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L F  + L G+ +GV+P             +  L      +   +       A 
Sbjct: 600 LHTAKGLEFPVVFLTGMEDGVFPHARTFGDNHELEEERRLAYVGITR--ARQRLYLSRA- 656

Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
                  TRS          SR+L+ L                               Q 
Sbjct: 657 ------VTRSAWGQPAYNAPSRFLEELPAELVRWERTEGSYTSWAGGGGGVGGRADRGQG 710

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
            +    P     A+      S +      P A
Sbjct: 711 GFTGGTPKAAQLARRLGVDGSRLATASELPSA 742


>gi|53720964|ref|YP_109950.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei K96243]
 gi|126441529|ref|YP_001060912.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 668]
 gi|126451499|ref|YP_001068210.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106a]
 gi|134281638|ref|ZP_01768346.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 305]
 gi|217424087|ref|ZP_03455587.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 576]
 gi|226193195|ref|ZP_03788805.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pakistan
           9]
 gi|242314228|ref|ZP_04813244.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106b]
 gi|254183976|ref|ZP_04890567.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1655]
 gi|254186442|ref|ZP_04892959.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pasteur
           52237]
 gi|254261078|ref|ZP_04952132.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710a]
 gi|52211378|emb|CAH37368.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei K96243]
 gi|126221022|gb|ABN84528.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 668]
 gi|126225141|gb|ABN88681.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106a]
 gi|134247305|gb|EBA47391.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 305]
 gi|157934127|gb|EDO89797.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pasteur
           52237]
 gi|184214508|gb|EDU11551.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1655]
 gi|217393150|gb|EEC33172.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 576]
 gi|225934795|gb|EEH30772.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pakistan
           9]
 gi|242137467|gb|EES23869.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106b]
 gi|254219767|gb|EET09151.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710a]
          Length = 695

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 79/711 (11%), Positives = 174/711 (24%), Gaps = 112/711 (15%)

Query: 34  FRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP------------IIKSL 81
                  P  +A+VT    T +A  E+R    ++   K+   P             + + 
Sbjct: 42  IEAKGFEPRHIAAVT---FTNKAAAEMRERVGKLLEGKTLTTPGKEGRKVPVNQLTVCTF 98

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             +  +    +                          +     D    +  E   +    
Sbjct: 99  HSLGVQILRQEAEHVGLKP-----------------QFSIMDSDDCFGMIQEQIGTTDK- 140

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 L + +  II + +      E+  A+           A        + +   L  
Sbjct: 141 -----GLIRKIQTIISLWKNGLVAPEE--AMTIAANEDEHQAAL-----VYRNYVATLHA 188

Query: 202 LNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             A              A +       +     ++I     +      L+  +A     A
Sbjct: 189 YQAVDFDDLIRLPTELFARNEPVRDRWQNRLRYLLIDEYQDTNACQYELLKLLAG--PRA 246

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                 D       W   T ++      +              +  L+       R+   
Sbjct: 247 AFTAVGDDDQAIYGWRGATLENLAQLGKDFP---------KLHVIKLEQNYRSTVRILTA 297

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +N +   +  + +  L  +                       + +   ++E  EA S+  
Sbjct: 298 ANNVIANNPKLFEKKLWSEH-----------------GMGDSITVTPCNDEEHEAESVVF 340

Query: 377 ALRMS---LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            L           +  A++      AR  +  L R  I   +S G           L + 
Sbjct: 341 RLSAHKFERRTQFRDYAILYRGNFQARVFEQVLRRERIPYVLSGGQSFFDKAEIKDLCAY 400

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L  I   +D  A    V  P    G        A      V+L        I       L
Sbjct: 401 LRLIANADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGI----EARL 456

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                +         Q      DKE A +++D +++ I          +         + 
Sbjct: 457 SARQVEPLRIFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNV 516

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +      +     E             +      ++       +       + +I  + 
Sbjct: 517 LEFLEWLKRKGTKPE------------AEQAVDGEAEGFHNADGLADTGKNLLGLIQTVA 564

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               ++ K E    + +     S+ L +  + L G+ EG+ P +   +            
Sbjct: 565 LMSMLEGKEEDPDAVRLSTVHASKGLEYPHVFLVGVEEGIMPHSGGSDD----------G 614

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA-----SRWLQRL 719
               E+   +    +      +  ++    ++            SR++  +
Sbjct: 615 PIDDERIEEERRLMYVAITRAQRSLHLNWCKKRKRARETIVCEQSRFIAEM 665


>gi|295697356|ref|YP_003590594.1| ATP-dependent DNA helicase PcrA [Bacillus tusciae DSM 2912]
 gi|295412958|gb|ADG07450.1| ATP-dependent DNA helicase PcrA [Bacillus tusciae DSM 2912]
          Length = 755

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 80/725 (11%), Positives = 194/725 (26%), Gaps = 127/725 (17%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +     T +A +E+R     + G ++       + +            +          +
Sbjct: 65  ILAITFTNKAAREMRERIGRLVGPEAEEIW---VSTFHSYCVRVLRRHIE-----PLGFT 116

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
               +L+ +      +  L ++  D     P            +A  ++ + + + T  +
Sbjct: 117 RSFSILDASDQTTAVKQVLGEMNLDTKKFDP----------RRMAGAISALKNELITPSQ 166

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ---IALMRAEAEH 221
             E       E                 + + ++L   NA          + L  A  E 
Sbjct: 167 AAERARDFFQEVVAQ-----------VYERYQQKLRVNNALDFDDLLVKTVELWDAFPET 215

Query: 222 LMKGTKGPII--IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
           L    +  +   +     +  A   L+  +A       V+   D       W     ++ 
Sbjct: 216 LEDQQRRFVYLHVDEYQDTNHAQYELVKRLAQRRRNLCVV--GDSDQAIYGWRGADVRNI 273

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                    + +P   + KL                             +     +    
Sbjct: 274 LDFE-----ADYPDAKVIKL---------------------EQNYRSTGRILAAANAVIA 307

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRN 397
            N    E ++ + +     V + EA +E+ EA  +   +R  +++  +    A++     
Sbjct: 308 HNRQRKEKRLWSDRPQGEPVIVHEAMDEQGEAYFVVEEIRNHVEQGGRYGDVAVLYRMGA 367

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  + +  I   +  G+          L + L  +    D  +   ++  P    
Sbjct: 368 QSRVLEEMMMKASIPYVMVGGVKFYERKEIKDLLAYLRILVNPRDDFSTERVINVPKRGI 427

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G      + A                             A ++N +     +     +  
Sbjct: 428 GEGTLTKAAA----------------------------FAAERNLSLYEALEKVDQLDVS 459

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             A   +   +     L       + T     + +    T      +  D       L  
Sbjct: 460 ARAAAGIRQFVDLTAALRAMMPYLSVTEL---VEEVLNRTGYREALIREDTLEAQSRLEN 516

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            EE  +++  F +  +T +     A      +   +D        E    + ++    ++
Sbjct: 517 LEEFLSVTQEFDRRQDTAAEGGLEAFLADVALVSDLD------MAETEDGVVLMTLHSAK 570

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RH 696
            L F  + L G+ EG++P +                L   ++   +    +         
Sbjct: 571 GLEFPVVFLVGMEEGIFPHSRV--------------LDDPDQMEEERRLCYVGITRAMDR 616

Query: 697 LIYTRSLRENNIPTI----ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
           L+ TR+ + N          SR+L+ +      +         +   D     +    + 
Sbjct: 617 LLITRAQQRNLYGRWQANPPSRFLEEI-----PEALLQWSAPRRSLRDRAAAPEPAAGKG 671

Query: 753 HYKRP 757
               P
Sbjct: 672 ALAWP 676


>gi|265993865|ref|ZP_06106422.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
 gi|262764846|gb|EEZ10767.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
          Length = 424

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/379 (13%), Positives = 93/379 (24%), Gaps = 29/379 (7%)

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWID-IITRLIDGETVKPKIEKSSTLFILGTLES 636
           E     +     +  +    +  +A + ++  +  L+D  +      ++  L        
Sbjct: 9   EAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVWTGSRAPKLIPYDFQGD 68

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
                  L     +              +R  +    L        +         GTR 
Sbjct: 69  GPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRLIICGYRGTRE 128

Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
              T      +     S      +       +    +      +  +    +  Q  +  
Sbjct: 129 SGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGATSLPQLPHDY 188

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-RTDRGTLFHNI 815
            +P       PR  + S    LI           L    +      P     RGT  H +
Sbjct: 189 RQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFALRRGTAIHML 246

Query: 816 ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
           +  L      K        + +I                       ++      H     
Sbjct: 247 LQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKAWQSVHAILDD 291

Query: 876 SSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-- 926
                +F         +   + I      ++G  DRI + +S  V I DYKT   P K  
Sbjct: 292 PRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDYKTNRPPPKTL 350

Query: 927 ETAQKLIDPQLSLEAAALK 945
           E        QL+L    L+
Sbjct: 351 EAVPSAYRAQLALYRELLR 369


>gi|296115176|ref|ZP_06833817.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
 gi|295978277|gb|EFG85014.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
          Length = 747

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 76/699 (10%), Positives = 171/699 (24%), Gaps = 114/699 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKK--STILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            +     T +A +E+R     + G       L    +   +                   
Sbjct: 68  QILAVTFTNKAAREMRERVAGLLGAPVEGLWL---GTFHSLCARM--------------- 109

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
             ++R  E   L   +     D    L  +  +  P       W  + +  +I   +   
Sbjct: 110 --LRRHAEYVGLSGSFTILDTDDQVRLLKQ--VIEPRHIDTKRWPPQGIMGVIQRWKDRG 165

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                +   ++  +                 + +RL++LNA       + +      H  
Sbjct: 166 LTPSRVSKAEDCDFADGKCR------EIYADYQKRLIQLNACDFGDLMLHMTEIMRTHPD 219

Query: 224 KGTK-----GPIIIAGSTGSIPATARLMSTVANHPNG-AIVLPGLDCHIPTAIWNTITEK 277
              +       I++     +       +  +A    G A +    D       W     +
Sbjct: 220 VLAQYHRFFRYILVDEYQDTNTIQYLWLRLLAQRGEGQANICCVGDDDQSIYSWRGAEVE 279

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +      P   + +L       R+ +     +      R              
Sbjct: 280 NILRFEHDF-----PGAHVVRLERNYRSTRQILGAASGLIAHNEER-------------- 320

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITAD 395
                                V +I   +  +EA  +   L    ++     + A++   
Sbjct: 321 -----LGKTLHPGREDAEGEKVRVISVWDSDDEARMVGEELERLHNDGHPLSECAILVRA 375

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
               R  +  L   G+   +  G+            + +  + + +D +A   ++  P  
Sbjct: 376 GFQTRAFEERLITIGLPYRVVGGLRFYERAEIRDALAYMRVLSQPSDDLAFERIINVP-- 433

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                                R    +  +  L      R                +   
Sbjct: 434 ---------------------RRGIGNTGVQKLHLHARARDIPLTAAVLEMLATGGIKGR 472

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            +E    L+    QC   L             + +    + +                 L
Sbjct: 473 AREHLAALMKCFGQCREDLA-------REGHVVVVERLLEESGYLDMWKADKSPEAPGRL 525

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +E     + F                +++ +  +++ E    +   +  L I+    
Sbjct: 526 DNLKELVRALADFE-----------TLGGFLEHVALVMETE----ENAGNERLSIMTLHG 570

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L FDT+ L G  EGV+P     +                E+ +              
Sbjct: 571 AKGLEFDTVFLPGWEEGVFPSQRTMDE-------GGAKGLEEERRLAYVGITRARLRAII 623

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
                R +  N    I SR+++ L         D  + R
Sbjct: 624 SHAANRRIYGNWQSAIPSRFVEELPPEHVDTIGDATRAR 662


>gi|124265321|ref|YP_001019325.1| putative ATP-dependent DNA helicase rep protein [Methylibium
           petroleiphilum PM1]
 gi|124258096|gb|ABM93090.1| putative ATP-dependent DNA helicase rep protein [Methylibium
           petroleiphilum PM1]
          Length = 693

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 73/711 (10%), Positives = 167/711 (23%), Gaps = 112/711 (15%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
           L  + +     T +A  E+R     + G +     +I +   +       D         
Sbjct: 37  LAPSQIAAITFTNKAAAEMRERAKALVGARPAKGLLISTFHSLGVRLLREDGAALGLKP- 95

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
                            +     D +  +  ++  +     A     A +L       + 
Sbjct: 96  ----------------QFSILDSDDVLGILRDAGGTTDAKTARRWQWAISL------WKN 133

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY-----QIALMR 216
           +        A    K       A          + ERL    A            +    
Sbjct: 134 QGLTPAQ--AEAEAKNPDEVQAA-----RVMTRYQERLAAYQAVDFDDLIGLPVALLQRH 186

Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG-----AIVLPGLDCHIPTAIW 271
                  +     +++     +      L+  +     G     A+     D       W
Sbjct: 187 DVVRAKWQAALRHVLVDEYQDTNAQQYELLKLLVGDGQGGRDRPAMFTAVGDDDQSIYGW 246

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
              T  +      +                                  +           
Sbjct: 247 RGATIDNLKRLPQDYPD--------------------------LQVIPLEQNYRSTGNIL 280

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384
              +     N  I + K+ +       V ++E+D+E  EA      ++    +       
Sbjct: 281 RAANHVIAANPKIFDKKLWSEFGDGEPVRVVESDSEEHEAERAVARIQALRGQGGAAAGA 340

Query: 385 ------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                   K  A++    + AR  +  L +  I   +S G           L + L  + 
Sbjct: 341 VGGQGIEWKDFAILYRANHQARVFEQALRKAQIPYKVSGGQSYFERAEIKDLCAWLRLLV 400

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
             +D  A    V  P    G                   G         L +  L  + +
Sbjct: 401 NQDDDPAFLRAVTTPKRGIGHQTLAGL--------GEFAGRWKVSLYEALFAESLGTVLS 452

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
            K    +  +   +++ +      +     + +                  + D      
Sbjct: 453 AKAVGSLHEFGRCVNDLEYRARQTVGAEDARAL-----LMGWLKDIGYEQHLHDGEDSEK 507

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                                          +  + GS  ++     +++   +    ++
Sbjct: 508 LAAARWSNVLDFVEWI---------ARRCGGETADDGSGQESERRSVLEVAQTIAVIISL 558

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
             + +  + L +     ++ L +  ++L G+NEG+ P  T      +  +   L  +   
Sbjct: 559 AERGDDQNVLTLSTLHAAKGLEWPHVVLAGVNEGLLPFKTDDESLTAAALVQRLEEERRL 618

Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRENNI----PTIASRWLQRLLVLGGT 725
            Y+G              L  +   R            SR++  + +  G 
Sbjct: 619 MYVGITR-------ARSTLAVSWLKRRKRGRETVAGAPSRFIAEMKLEEGR 662


>gi|256112427|ref|ZP_05453348.1| ATP-dependent nuclease subunit A [Brucella melitensis bv. 3 str.
           Ether]
          Length = 440

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/403 (12%), Positives = 96/403 (23%), Gaps = 30/403 (7%)

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGK-TLSSLFSKIIETGSCIKANAIEWID-IITRL 612
           +     L             L   E     +     +  +    +  +A + ++  +  L
Sbjct: 1   EFQNYALSAERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFL 60

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           +D  +      ++  L               L     +              +R  +   
Sbjct: 61  VDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYR 120

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
            L        +         GTR    T      +     S      +       +    
Sbjct: 121 RLLYVGMTRAEDRLIICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTP 180

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
           +      +  +    +  Q  +   +P       PR  + S    LI           L 
Sbjct: 181 RSFIEINEEDQAGATSLPQLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LS 238

Query: 793 LDFIPHFKKDPD-RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
              +      P     RGT  H ++  L      K        + +I             
Sbjct: 239 SPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------- 288

Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADR 904
                     ++      H          +F         +   + I      ++G  DR
Sbjct: 289 -----WPDAERLKAWQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDR 343

Query: 905 IDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALK 945
           I + +S  V I DYKT   P K  E        QL+L    L+
Sbjct: 344 ISVDES-RVLIVDYKTNRPPPKTLEAVPSAYRAQLALYRELLR 385


>gi|326405600|gb|ADZ62671.1| ATP-dependent nuclease, subunit B [Lactococcus lactis subsp. lactis
           CV56]
          Length = 1099

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 68/207 (32%), Gaps = 19/207 (9%)

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI--NKN 827
            S S  ++  N  Y  +    L L+   +     +    G  FH +  +++++     +N
Sbjct: 755 ASVSSFERFYNCEYQYFLETTLGLETFENID--INSKIVGNFFHEVFEKVMQEEALSAEN 812

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS--SIEKIFVNI 885
             E    +   +DS++ +                +I        ++  S   ++ +    
Sbjct: 813 FDEKLTKVLHDVDSNYSRYFTQDATARFTWTNLEEIVRQTATVLKETVSTDELKTLLTES 872

Query: 886 PAKMA------IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQL 937
              +            I+L G  DR+D L S ++   DYK+      +   A   +  Q 
Sbjct: 873 SFGLPKSELGNFSVDDIYLRGRIDRLDQLSSDYLGAIDYKS-SAHSFKLQDAYDGLSLQF 931

Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIR 964
                 +K         +K+    Y++
Sbjct: 932 MTYLDVIK----EAFPNQKIWGALYLQ 954


>gi|281490501|ref|YP_003352481.1| ATP-dependent nuclease subunit B [Lactococcus lactis subsp. lactis
           KF147]
 gi|281374319|gb|ADA63852.1| ATP-dependent nuclease, subunit B [Lactococcus lactis subsp. lactis
           KF147]
          Length = 1099

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 68/207 (32%), Gaps = 19/207 (9%)

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI--NKN 827
            S S  ++  N  Y  +    L L+   +     +    G  FH +  +++++     +N
Sbjct: 755 ASVSSFERFYNCEYQYFLETTLGLETFENID--INSKIVGNFFHEVFEKVMQEEALSAEN 812

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS--SIEKIFVNI 885
             E    +   +DS++ +                +I        ++  S   ++ +    
Sbjct: 813 FDEKLTKVLHDVDSNYSRYFTQDATARFTWTNLEEIVRQTATVLKETVSTDELKTLLTES 872

Query: 886 PAKMA------IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQL 937
              +            I+L G  DR+D L S ++   DYK+      +   A   +  Q 
Sbjct: 873 SFGLPKSELGNFSVDDIYLRGRIDRLDQLSSDYLGAIDYKS-SAHSFKLQDAYDGLSLQF 931

Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIR 964
                 +K         +K+    Y++
Sbjct: 932 MTYLDVIK----EAFPNQKIWGALYLQ 954


>gi|217076813|ref|YP_002334529.1| hypothetical protein THA_718 [Thermosipho africanus TCF52B]
 gi|217036666|gb|ACJ75188.1| hypothetical protein THA_718 [Thermosipho africanus TCF52B]
          Length = 1006

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 82/639 (12%), Positives = 201/639 (31%), Gaps = 70/639 (10%)

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
           N    A++  +  +A+++  +L    +  ++S  + LS +    ++       +   D  
Sbjct: 302 NPSDIAIVAPNIQIAKQIAEKLDEMKVPFNLSMNVKLSESKVVKMILQPFKTKYFGYDLE 361

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
            I   ++ P          +   ++  +  ++     S  I++  +  +  +   ++   
Sbjct: 362 NIFATLETPFVDTLG--LTMDEIESLFKEFSIEEGDFSKSIIEKINERIKELENVEDED- 418

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                 +  EE KE  +     +            N N         D+       ++  
Sbjct: 419 ----VMQQVEEKKEEYLKFSKVLENLFGLFEEIDKNING--------DFLVFLKKFIKEK 466

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI------KANAIEWIDIITRLIDGETV 618
            LD+     N  +    +   S   K  E    +      K +      I+T +++ E  
Sbjct: 467 FLDKFEVFNNEEYISIIQEEISALYKFSEVIDNLLQYNMGKTSWRNMFKILTSIVNAENY 526

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
           +    K + + I+    +R +  +        +GV+P        L     S+ N   + 
Sbjct: 527 RLSPRKENAVDIVDVQIARFVEKEYKFFVSAVDGVYPSFNVNPLIL--QTLSEPNKLKSF 584

Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ- 736
               +  +       + H   +      +  P + S +      +        +    + 
Sbjct: 585 NEEVERRNFVLSLIFSSHNYISYPKATLSGDPVVPSIYAAEFGEIKEESDERYILIDPEM 644

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
            + +  +++       +          +A+ +  S S I   ++ P   Y + +  +   
Sbjct: 645 IFSEEDKRIYEAYFGENKLILNEKFKSDAEIKRLSHSRISDYVSCPLYYYFKHVAGIR-- 702

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI-DII 855
            ++ +D     +G L+H ++    +K I+ N  +I + +++  D  +++E     I   I
Sbjct: 703 -YYSQDKSNLYKGILYHRVLKNYFEKEISFNKEKIKNYVEEAYDEIYKEEFDRYKIPREI 761

Query: 856 WRHLFHKISHSFLE---HEEKIQSSIEKIFV-------NIPAKMAIESIGIHLTGFADRI 905
               F +    F+E    E  ++   + + +        +    ++ +  +      DRI
Sbjct: 762 NIEEFTQKLEEFIEGLFSESYLKIGRKILEIKAIKSLEEVYKTHSLFNRTVEFEARIDRI 821

Query: 906 DLLKSG----------------------FVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
           D LK                           I DYKT      +  +     QL L    
Sbjct: 822 DELKENYTNFVGKKSSEVSDNMEKIDKKAYAIVDYKT-KVIDYKLIE-----QLLLYDYV 875

Query: 944 LKA--GSFSQIDCRKV-ANLFYIRLKQKFKIDCITNDKK 979
           ++   GS+  +        L ++ +  K        D  
Sbjct: 876 IRENKGSYISLGEADFDTYLVFLGIDDKKSYFLKREDNS 914


>gi|308377259|ref|ZP_07441669.2| UvrD/REP helicase subfamily [Mycobacterium tuberculosis SUMu008]
 gi|308348310|gb|EFP37161.1| UvrD/REP helicase subfamily [Mycobacterium tuberculosis SUMu008]
          Length = 695

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 74/653 (11%), Positives = 162/653 (24%), Gaps = 63/653 (9%)

Query: 4   KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58
           ++  V    P          A    T+     +   N       V     T++A     +
Sbjct: 70  EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 129

Query: 59  ELRSEFIEITGKK-STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL 117
            +RS    + G       P   +        F   LL  Y L  P+    RLL    L  
Sbjct: 130 RVRSRLARLAGIGLGCGDPAACAPVVSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQ 189

Query: 118 IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY 177
           +  + +      L  +   +   S    +W    L + +           +L  L +   
Sbjct: 190 LAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERLVHALP 247

Query: 178 GMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
              +                      L        ER+             +  R  A  
Sbjct: 248 AGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAARLAATS 307

Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTI 274
                  +     +++     +  A   ++S++      +G  +    D       W   
Sbjct: 308 PQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIYGWRGA 367

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
           +  +    +++   S      + +LL       + ++    +S E   RS+ +       
Sbjct: 368 SATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSVAVRALR--- 424

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLDENKKK 388
                          P        V      + + E   IA  LR       +       
Sbjct: 425 ---------------PRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADGVKPPT 469

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
           +A++      A  +   L   GI  ++     L +    + + ++L  +       A   
Sbjct: 470 AAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMR 529

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
           ++  P  + G  +      + AL L     +  S + + + +          +    P  
Sbjct: 530 VLTGPRWRLGARDLAAL-WRRALTLSGESPSTASPESIAMAASADADNPCLADAISDPGS 588

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
               S         L   +      L     +  +    +   D       C        
Sbjct: 589 AEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVD-------CEVRASAPV 641

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                     +    + + +++     S   + A     +    +     +  
Sbjct: 642 SGGWAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVAENGCRLP 694


>gi|290559701|gb|EFD93026.1| ATP-dependent DNA helicase [Candidatus Parvarchaeum acidophilus
            ARMAN-5]
          Length = 782

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 65/415 (15%), Positives = 135/415 (32%), Gaps = 46/415 (11%)

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
                D+   L   E             +    +++   FD +I   L +    K +  + 
Sbjct: 370  PNLDDLFVYLYAAEDNYDSNNADENFILTTVHKAKGREFDNVIY--LPKRQNNKTSFIDL 427

Query: 663  FLSRVMQSDLNLKTAEKYIGQA-AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
              + +++   N+   E+   ++   DF      +  +Y  +            ++ + + 
Sbjct: 428  VTNSIIKQTKNIDVKEELSEESVRVDFVAFTRAKEGLYIVTNPNIAEEYYIEGFIDQRIE 487

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH-----YKRPKPFPPLEAQPRTYSFSEIK 776
                +     K+  + Y  +  K     K+       +   + +      P+T SFS I 
Sbjct: 488  EVEDEPAPYTKRYEEAYSLFVNKNYEDAKKILNDDSNWLLDRIYNYFRNGPKTISFSLID 547

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
              + +P       IL +             + G+  H I  E+ KK +N++    N    
Sbjct: 548  S-VQNPVNFVKGNILGIRE------KTASIEFGSKAHRIAEEMFKKTLNEDELNTNE--I 598

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES--I 894
            +I++          +I  I R +  K     ++ E+          V +P +        
Sbjct: 599  RILE----------NIRKIVREISEKYGAEQVDAEKS---------VELPLEAVFPGMER 639

Query: 895  GIHLTGFADRIDLLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
             I + G  D + L K      I D+KT     +E   K    QLSL    L   +   + 
Sbjct: 640  EIKIVGKIDAVFLNKEKNRFLIIDFKTDR--SEEEGSKHR-RQLSLYRRMLA--AEKGVK 694

Query: 954  CRKV-ANLFYIRLKQKFKIDCIT-NDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
             + +   + YI L  K            +   D   E   K+++++   + +  +
Sbjct: 695  EKDIDTAIAYINLTGKINTGKFDYKLDTQKIKDSQIETVKKHVLQLFEYMDDPNK 749


>gi|215428673|ref|ZP_03426592.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T92]
          Length = 509

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 71/257 (27%), Gaps = 28/257 (10%)

Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                   D     D               P    P   S S + +L+ DP     R + 
Sbjct: 273 IDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGARQRLMC 332

Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
           +L   P           G  FH  + +     +  +  ++     + +         P  
Sbjct: 333 RLPKRPDPH-----AWLGDAFHAWVQQFYGAELLFDLGDLPGAADREV-------GDPEE 380

Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
           +  + R                  ++     V +P +M I      + G  D + +   G
Sbjct: 381 LAALQRA-----------FTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVFVDPDG 427

Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
              + D+KTG  P    A +    QL++   A    +        V   FY  ++    +
Sbjct: 428 GATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VRSGITV 484

Query: 972 DCITNDKKKYSADELSE 988
                      A  L++
Sbjct: 485 VPDELPAPGELAMLLTD 501


>gi|167645425|ref|YP_001683088.1| UvrD/REP helicase [Caulobacter sp. K31]
 gi|167347855|gb|ABZ70590.1| UvrD/REP helicase [Caulobacter sp. K31]
          Length = 804

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 63/624 (10%), Positives = 163/624 (26%), Gaps = 74/624 (11%)

Query: 2   HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             + P +      +   R +   L +       R           + +   T +A +E+R
Sbjct: 57  ATEGPVLVLAGAGTGKTRVLTTRLAHILATGRARP--------WELLVVTFTNKAAREMR 108

Query: 62  SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
                I G ++  L  + +   V  +                  ++R  EL  L   +  
Sbjct: 109 ERITHIIGDEAEGLRWLGTFHSVAAQI-----------------LRRHAELVGLKSSYTI 151

Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              D  + L  +   +   +  +  W  + LA +ID  +      + + A +  ++    
Sbjct: 152 IDTDDQERLMKQLIEAD--NIDSKRWTPRILAGLIDTWKNRGWTPDRVPASEAGEFANGK 209

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGST 236
            +A        + + ERL  LNA       +  +       +     +     +++    
Sbjct: 210 GIAL------YRQYQERLRILNACDFGDLLLHNITIFTGNPDVLADFQRRFQYVMVDEYQ 263

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
            +  A    +  +A        +   D       W      +      +      P   +
Sbjct: 264 DTNVAQYLWLRLLAQGRQNVCCV--GDDDQSIYGWRGAEVDNILRFERDF-----PGAKV 316

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
            KL          +     + +    R                     L   +   +   
Sbjct: 317 IKLERNYRSTEHILAAASGLIDANKSR---------------------LGKTLWTEETGG 355

Query: 357 SDVALIEADNEREEAISIAIALRMS--LDENKKKSALITADRNLARRVKLELTRFGINID 414
             V +    +   E+  +A A+  +          A++       R  +       I   
Sbjct: 356 EKVKVSGVWDGEAESRMVADAIETAKKAGRKYSHMAILVRASFQMRAFEERFVMLQIPYK 415

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALEL 473
           +  G             + L  I   +D +A   +V  P    G      L +   +  +
Sbjct: 416 VVGGPRFFERAEIRDAHAYLRLIQSPDDDLAFERIVNTPKRGIGDTSVTKLLQIARSQGI 475

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
             +   +      DL +     ++    +       +  +   + +  +L +        
Sbjct: 476 STVDAARVIIGGDDLPARTRTALSNFLRDLDRWRALAANTPHQRVMEAVLEESGYTDALR 535

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
           L    T++        +        T    +       +  +   ++G    +++   + 
Sbjct: 536 LDKGPTSQTRLENLKELVQSMSAFDTLEAYL-----EHVSLVMDLDKGAGDDAVWIMTLH 590

Query: 594 TGSCIKANAIEWIDIITRLIDGET 617
           +   ++   +        +   + 
Sbjct: 591 SAKGLEFPLVFLPGWEEGVFPSQR 614


>gi|24373707|ref|NP_717750.1| exodeoxyribonuclease V, gamma subunit [Shewanella oneidensis MR-1]
 gi|24348072|gb|AAN55194.1|AE015657_6 exodeoxyribonuclease V, gamma subunit [Shewanella oneidensis MR-1]
          Length = 1270

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 88/866 (10%), Positives = 198/866 (22%), Gaps = 109/866 (12%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   L    R       LL S  I V +      LR E  +  G  + +      L   
Sbjct: 12  VLCAHLAAYLRQPLPGGCLLQSEHILVQSPGMSTWLRLEIAKQNGIAAALE---FPLPSS 68

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA- 143
              +   DLL +       +      +L +L+     +        Y     S       
Sbjct: 69  FIWQLCHDLLPNVPKENAFTKAAMTWKLMQLLPRLLEEESFGPLRHYLGHIESSSPDSTT 128

Query: 144 ----------------NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLA 184
                               L   +ADI D        W                     
Sbjct: 129 KNNQLEASNSIAADNIKLYQLCGRIADIFDQYLVYRPDWIAAWEANEPLDALKLNEEQRW 188

Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPAT 242
              L  A   +    +  +          L+ A A+  H +      + + G +   P T
Sbjct: 189 QPILWRALIAFNRDELRQSHYHRANLHQDLIAALADSTHSLAKLPERLFVFGISSMAPQT 248

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTA----------IWNTITEKSTNITSSNTTYSTHP 292
             ++  +A   +  I+      H                    ++       +     +P
Sbjct: 249 IDVLHQLAARIDVIILNLSPCQHYWGDIIDPRHRARMALQYAGKRQLAEQWEDKLEVGNP 308

Query: 293 QYSL-----AKLLDFLDIKREDVKRLGNV-------SNEMYGRSMVISKSFLPPDTSDMR 340
             +       +LLD L     +    G+               +  +             
Sbjct: 309 LLANNGKMGRELLDMLLELPPEHCDFGDDVYCEPCGDPNDPDCNASMLAGVQYDILEMQT 368

Query: 341 NTDILENKIP---------NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KK 387
              +L               +++    + +    +   E  ++   L   LD +     K
Sbjct: 369 LDRVLGPDAELYQAVTNRRRLKRVDDSIQIKSCHSPLREVETLHDHLLDLLDRDNQLTPK 428

Query: 388 KSALITADRNLARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              ++  D          +             I+       +   +   +LLN       
Sbjct: 429 DIVVMMPDVAAYAPYIDAVFAAKQGLEYIPYAIADRGAAQESPLINSFLNLLNINQSRFG 488

Query: 443 FMAIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGNK--------------NSYDIM 486
              I ++++ P  L +F   E  L   +  L+   +R  +               +    
Sbjct: 489 LTDILSILEVPAILRRFQLEEDELPLIRRWLDEAGVRWGRDEQSRVKQGVPAFEQNSWAF 548

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            +K L+L          +    Q+        +       + + +  +            
Sbjct: 549 GIKRLILGYALRNDAPLYQASPQAPSYLVVSGVEGQSAQALGKLLNFIEVLDETTLQLAQ 608

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNL-WFEEEGKTLSSLFSKIIETGS--------- 596
             +           L      +  +   L    +   TL           S         
Sbjct: 609 PQAPCQRLFELTQLLNAFYAPDEDEREQLQEVRDAIATLEQELQAASPADSYTAAYDVNP 668

Query: 597 -----------CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                       +  +         + +    V  +     ++     +  R + F  + 
Sbjct: 669 YFLDQSGLHSNALNLSIEVLAQWFNQRLTESRVGQRYLAG-SVNFCTLMPMRSIPFKVVC 727

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
           L G+N+G++P+      F             + +   +      + +    L  +   R 
Sbjct: 728 LLGMNDGIYPRMQHPVGFDLMAHFGARKGDRSRRLDDRYLFLEALLSAREQLYISYIGRS 787

Query: 706 NNIPTIA------SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
               +        S  ++   +    +                  L+        +   P
Sbjct: 788 ERDNSERIPSMLVSELIEYCQLCYVPESLTAETPAVGNEAAQQALLETIISHQPLQPFDP 847

Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAV 785
                 +P+  +  +       P  +
Sbjct: 848 KLYQSTEPQAQAIKQSYSQQWCPPDI 873


>gi|172038900|ref|YP_001805401.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142]
 gi|171700354|gb|ACB53335.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142]
          Length = 772

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 75/729 (10%), Positives = 178/729 (24%), Gaps = 138/729 (18%)

Query: 40  NPLLLASVTIYVPTKRAIQELRSEFIEITG--------KKST----------ILPIIK-- 79
           +P     +     T +A +E++     +           +            +L  +   
Sbjct: 54  DPES---ILAVTFTNKAAREMKDRLERLFAQEMALKHHGQPFNSLSEYDQKRLLSQVYKK 110

Query: 80  --------SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
                   +   +       D+    +        +R   +     +       ++K   
Sbjct: 111 TTKKLWIGTFHSLCARILRYDINKYQDERKR--TWERNFSIFDESDVQSLVKNIVLKQFN 168

Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
            +     P +    I  AKNL              E                    +   
Sbjct: 169 LDDKKFNPRNVRYTISNAKNL----------GLSPEAY-------LKEHSYAKGRIIAEV 211

Query: 192 SKYWTERLVELNASSPVG------YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            + +  +L   NA                  +   +        I++     +      L
Sbjct: 212 YQEYQNQLAANNALDFDDLILIPVRLFQQNESILGYWHS-QFKHILVDEYQDTNRIQYEL 270

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           +          ++    +       W      + +I        +   + +A     L+ 
Sbjct: 271 IQ---------LLTTNGELQKSEYNWQ-----NRSIFVVGDADQSIYSFRMADFTILLNF 316

Query: 306 KREDVKRLGNVSNE----MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
           + +    L +        +              +     N+  ++  +   +    ++  
Sbjct: 317 QSDFGDGLPDEDTRTMVKLEENYRSTETILQAANKLIENNSQRIDKILRPTRGEGEEIYC 376

Query: 362 IEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTRFGINIDISA 417
            +A++ER EA  +   ++  ++ N +      AL+      +R  +  L R  I   I  
Sbjct: 377 YQAEDERIEADFVISKIQELVETNPELNWGDFALLYRVNAQSRPFEDNLIRNNIPYTIVG 436

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVAL 476
           G             + L  I    D +++  ++  P    G      L +A   LE+   
Sbjct: 437 GFKFYDRQEIKDSLAYLRLIINPFDTVSLLRVINSPRRGIGKTSVDSLLKAAQELEIPLW 496

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
               +   +  L                               A      + +  T +  
Sbjct: 497 EIISDETSVKTL-------------------------------AGRAAKSVNKFATMIKE 525

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
            +                +L+    +            L    E  +  + + +  E   
Sbjct: 526 LQGKLKELSATELFDQVMELSGYVHELKQKGTEEADNRLENIYELYSAIAQYQEDSED-- 583

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                       +T       +    E    + ++    ++ L F  + L GL +G  P 
Sbjct: 584 ------TSLQGYLTNASLASDLDNLDEGQEKVSLMTLHSAKGLEFPIVFLVGLEQGTLPH 637

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL----RENNIPTI 711
             + N  LS   +  L               +      +  L  T +       +     
Sbjct: 638 IRSLNDPLSLEEERRLC--------------YVGLTRAQEQLFITHARERYVWGSKEIKT 683

Query: 712 ASRWLQRLL 720
           AS++LQ + 
Sbjct: 684 ASQFLQEIP 692


>gi|119714518|ref|YP_921483.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Nocardioides
           sp. JS614]
 gi|119535179|gb|ABL79796.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Nocardioides
           sp. JS614]
          Length = 1113

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 85/870 (9%), Positives = 214/870 (24%), Gaps = 40/870 (4%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
             +L   L +  R    +P   A   + VP K   + L        G        + +  
Sbjct: 11  TDVLADALGDLLRTPLADP--FAEEVVVVPAKGVERWLTQRLSHRLGAGPRGDDGVCAGV 68

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLL-ELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             +  +    LLL    + P    + +   LA +      +    +              
Sbjct: 69  RFLNPRSLVSLLLGRERDDPWDPERLVWPLLATIDESLGEREFATLGRHLGHGVDGADGE 128

Query: 142 PA--NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
                   +A  LA +      +            +            L    + W   +
Sbjct: 129 LRRNRRYSVALRLAHLFASYALQRPSLVTAWREGRDGEHGGEQGLPPDLAWQPELWRRLI 188

Query: 200 VELNASSPVGYQIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
            +++A  P           +A          + + G T        L+  +  H +  + 
Sbjct: 189 AQVDAPPPDVRHAQTCAALQAGGDGLPLPDRLSLFGHTRIPVTEVALLKALGEHRDVHLF 248

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYS--THPQ-----YSLAKLLDFLDIKREDVK 311
           LP     +   + +          +++ +     HP          +L   LD    +  
Sbjct: 249 LPQPSPVLWDDLADLGGPGGVVPRAADDSVERVGHPLLASLGRDARELRRLLDGVSSEEV 308

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
           R    +        V    +L  D          E     +      + +        + 
Sbjct: 309 RPPAGTPTGSTTDPVTLLGWLQHDLRANHAPSYDERSTRELDPDDHSLQVHACHGPARQV 368

Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL---------TRFGINIDISAG 418
             +   L   L+++     +   ++  D      +                 + + ++  
Sbjct: 369 DVLREVLVGLLEDDPTLEPRDVLVMCPDIETYAPLISAGFGLATTDGHPAHRLRVKLADR 428

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLV-------KHPLAKFGFPEKYLSRAKNAL 471
              ST    ++   LL+          +  L        +               A+  +
Sbjct: 429 ALTSTNPLLAVAGDLLDLAGGRVTASDVLDLAGTDPVRRRFGFTDDELDRVSRWVARAGV 488

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                  ++ ++ +             +                       +    +   
Sbjct: 489 RWGLDEESRAAFRMERFPHNTWRTGLDRILLGVAMSGDDHHHLGRGLPLDDVASSEIDLA 548

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             L       + T   L+ +       T L++          +  ++          +  
Sbjct: 549 GRLAELVARVDRTLTVLAGARTVADWATGLRDGVRSLVDVAADDAWQVPQFERELGRAAA 608

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                 ++    +   ++   + G   +    ++ +L +   +  R +    + L GL++
Sbjct: 609 SSHEGGLELRLADVRAMLESRLAGRPTR-ANFRTGSLTVATMVPMRSVPHRVVCLVGLDD 667

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
           GV+P+  A +     + +  L  +   +   +      +   T HL+ T S  +      
Sbjct: 668 GVFPRAGAVDGD-DVLGRHPLTGERDVRSEDRQLLLDAVLAATEHLVITYSGADEQSGAS 726

Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
               +    +L   D   N   R +       +             +  P          
Sbjct: 727 LPPAVPLGEILDAADRTTNAPVRDRVLTRHPLQPYDARNFT-----RERPFSFDTAALAG 781

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
               + +  +P  +    +     +     D    D      + +   ++ R++  TP  
Sbjct: 782 ARSARGVRREPPPLLDGPLPPRLALDGRAADVSLQDLRDFLGHPVRAFLRGRLDVATPFE 841

Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
              +   I    +        D + R L  
Sbjct: 842 PDDLADAIPVSLDSLEKWQIGDRLLRQLLA 871


>gi|239814543|ref|YP_002943453.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239801120|gb|ACS18187.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 809

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/552 (9%), Positives = 131/552 (23%), Gaps = 63/552 (11%)

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATAR 244
              + + E+             +       ++       +     I+I     +      
Sbjct: 188 ELYQLYEEQCQREGVVDFGELMLRSYELLRDNDPVREHYQRRFRHILIDEFQDTNRLQYA 247

Query: 245 LMSTVANHPNG---------AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
            +  ++                V+   D       +      +                 
Sbjct: 248 WIKMLSGSTAAGGQFVPGENNSVIAVGDDDQSIYAFRGARVGNMADFVREFDVR------ 301

Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
                                  ++       S      +     N   L   +   Q  
Sbjct: 302 --------------------HQIKLEQNYRSYSNILDSANELISHNKKRLGKNLRTDQGP 341

Query: 356 FSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINI 413
              V + E+  +  EA  +   +R  + +  ++K+ A++      +R ++  L    +  
Sbjct: 342 GEPVRVYESPTDLAEAQWMVEEMRQLVRDGFDRKEMAVLYRSNAQSRVIETALFNASVPY 401

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            +  G+            + L  +   +D  +   +V  P    G       +       
Sbjct: 402 RVYGGLRFFERAEIKHALAYLRLLENKDDDTSFLRVVNFPPRGIGARTLEQLQDAARTAG 461

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
            +L    ++       +L                   R   E       LV+H       
Sbjct: 462 RSLHDAVHAVGGKAGSNLTAFVAKIDVLREQTQGASLREIIELVLDHSGLVEHYKADREG 521

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
               +  +       S     +        + +DE R+ P     +       +  + + 
Sbjct: 522 ADRIENLEELVNAAESFV-TQEGFGRDAVALPIDELRQSPAS---QGLDPNRPVIDEPLA 577

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
             +            +T                 + ++    ++ L FD + + G+ EG+
Sbjct: 578 PDAETGETLSPLAAFLTHAALESGDNQAQAGQDAVQLMTVHAAKGLEFDCVFITGMEEGL 637

Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL----RENNIP 709
           +P   + + F S   +  L                 +    + L  + S           
Sbjct: 638 FPHENSMSDFESLEEERRL-------------MYVAITRARKRLYLSHSQTRMLHGQTRY 684

Query: 710 TIASRWLQRLLV 721
            + SR+ + L  
Sbjct: 685 NVKSRFFEELPE 696


>gi|307717799|ref|YP_003873331.1| hypothetical protein STHERM_c00820 [Spirochaeta thermophila DSM 6192]
 gi|306531524|gb|ADN01058.1| hypothetical protein STHERM_c00820 [Spirochaeta thermophila DSM 6192]
          Length = 870

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 94/855 (10%), Positives = 199/855 (23%), Gaps = 108/855 (12%)

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
              G    +  A    S       ++ V         L G    +   I         +  
Sbjct: 71   PAGPLHRVWAAAVLLSREEAQDYLAPVFGEVWERGGLEGFLASVLPEILLLDLGGRGDAP 130

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                       Y        L    E+V+R          R +V+               
Sbjct: 131  WDRALSWLAEGYRGVLEEAGLYETEEEVRRAAKEGRAPEERVVVVYPELYTAVGVPWEVL 190

Query: 343  DILENKIPNIQKCFSDVALIEA-DNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
                  +        D +++    +   E  +  + +R +L E  ++  L+ ADR L   
Sbjct: 191  GPSWLGLSLRAGVPEDASVLVCYPDAVSEVRAALMEVRDALKE-GEEVELVLADRGLLGL 249

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            +  E    GI +    G  L       +L  +  A     DF ++  L+      +    
Sbjct: 250  LAEEADLLGIPLSPEVGRALREVPGVRLLFLMDEARRTGWDFDSVRDLLLAGDVPWKEG- 308

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                                                             R   E      
Sbjct: 309  ----------------------------------WGEAVREAVERKVWGRKGWEKVGRVG 334

Query: 522  LLVDHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
             L+  +   +             +     +  W                 +L  L     
Sbjct: 335  ELLRAVQGVMEAESFGALRKALDSWVQGWLGAWADDAEQRAWGFARGLLGQLSLLE-GRT 393

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
            G  +   +   IE                        V         + +     S    
Sbjct: 394  GVRVGRPWEVWIEALKA--------------------VPYVPGGGEGVPVYPYRVSAGAV 433

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT------ 694
                 + G +       +    FL    +  L + T                        
Sbjct: 434  GVRQWVLGASAEGVEVASIPVEFLPEDERGRLGVSTRRFTESFVYAYLRSGARMSMHRVQ 493

Query: 695  -------RHLIYTRSLRENNIPTIASRWLQRLLVLGGT-------DFFDNLKKRGQCYLD 740
                     +       E               V  G        +   +  +R +   +
Sbjct: 494  EEITHEVPSVFLLEGTVEERGMVEDHPLAVEQRVWRGEVVEVRPVEAMVDGFRRAEKVRE 553

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
               K          +  +     +      S + ++         +  R+  L+      
Sbjct: 554  RWGKGAEPLGGVAGELLERHGMRKGNELLLSPTVVQGFYECGLRAWYERVGGLEEASFRP 613

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPE--INHLMKQIIDSHFEKENLP-PHIDIIWR 857
               DR   G ++H ++ E+    + +   E  +    +  ++   EK          I  
Sbjct: 614  GFIDRRSLGIVYHALLEEVFSPYVGRLLSEVRLPEGFRARVEKELEKHGAVVREFIEIVA 673

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA-IE----SIGIHLTGFADRIDLLKSGF 912
                      +E  +++ S           ++   E    + G+ L G  D +    +G 
Sbjct: 674  DRVTARLEGVIERLKRLFSGTPPARGARVGRIEGWERSPIAEGLALRGRLDLLVEDGAGN 733

Query: 913  VDITDYK-TGDN----PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
              + D+K T       P K    +  + Q       L A    + + R V +  Y+ +++
Sbjct: 734  PVLFDFKYTNVPSFPHPDKLEEGRRFEMQ-----LLLYALLLEKQEKRLVEDALYVSVEK 788

Query: 968  KFKIDCITND-----------KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016
               +                 +     ++L E+  + L+EI   ++ G+  +     +  
Sbjct: 789  DEVLSLRKRLVSRGNRNTQMYRDDEGLEDLFERLERTLVEIGQRMEGGQISYAEDRDICT 848

Query: 1017 KSNIQSEYDHLARVA 1031
                   +  + RV 
Sbjct: 849  TRAGGCPFRRVCRVR 863


>gi|256788739|ref|ZP_05527170.1| hypothetical protein SlivT_29982 [Streptomyces lividans TK24]
 gi|289772633|ref|ZP_06532011.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289702832|gb|EFD70261.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 268

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 76/253 (30%), Gaps = 32/253 (12%)

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             P     R I +L          +   RGTL H ++  L      + T      +     
Sbjct: 3    CPLLYRFRVIDRLPEK-----PSEAATRGTLVHAVLERLFDAPAAERTAPTARALVPGQW 57

Query: 841  SHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                +          ++        W     ++   +   E    S +E     +  +  
Sbjct: 58   DRLRESRPEVGELFADDPEGERLAQWLAEAERLVERWFSLE--DPSRLEPAERELFVEAE 115

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            ++S G+ L G  DR+D+  +G V I DYKTG  P+     +    Q+   A  +      
Sbjct: 116  LDS-GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP-QYAEGALFQMKFYALVVWR---- 169

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
             +       L  + L     +                E+  + L+ +   ++   +    
Sbjct: 170  -LKKVVPRRLQLVYLGSGDVLTYDPVLAD-------LERVERKLLALWEAIRLATETGDW 221

Query: 1011 HLRLSEKSNIQSE 1023
              R ++      +
Sbjct: 222  RPRPTK-LCGWCD 233


>gi|212716069|ref|ZP_03324197.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661436|gb|EEB22011.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM
           16992]
          Length = 907

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 72/735 (9%), Positives = 178/735 (24%), Gaps = 98/735 (13%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVV 85
             L     +   +    +S+     T +A  E+R     + G ++       I +     
Sbjct: 62  RVLTRRIAWLLAHGFWASSILAITFTNKAAAEMRERLAALVGPEAEHMW---ISTFHSAC 118

Query: 86  EEKFTADL-LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                 D   +       + +      L +LI      L    K   P   L        
Sbjct: 119 VRILRRDGKEIGLTSGFSIYDTADCERLVKLISG---DLNIDTKRYTPRMLLGKISDCK- 174

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD---FLKIASKYWTERLVE 201
                 +L    D +++    ++            + + A D    + +    +  RL  
Sbjct: 175 -----NSLTSWQDQLKSVNCDYK-------PGQRGYQVSAGDVDELVAVVYAEYQHRLAM 222

Query: 202 LNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            NA       +  +       +     +     + +     +  A   L+  ++   +G 
Sbjct: 223 ANAVDFDDLIMRTVELFQRCPQVSEYYRHKFRYVFVDEYQDTNHAQYVLVRELSGIDSG- 281

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                     P            +  +     S    Y+            E        
Sbjct: 282 --------EQPDPQMRGAGRVGPSWITV-VGDSDQSIYAFRGADIRNIQDFEQDFPNAKT 332

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                      +                 +     + +    +    ADN ++EA  IA 
Sbjct: 333 IMLEQNYRSTQTILDAANAVIARNENRKPKKLWTALGEGDK-IVGYAADNAQQEAGWIAN 391

Query: 377 ALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            +    +E     +  A++      +R ++  +    +   +  G             + 
Sbjct: 392 EIARIHEEEGIAYRDIAIMYRANAQSRSLEEAMINANLPYQLVGGTKFYERKEIKDALAY 451

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L AI    D + +  ++  P            RA+  +   A   +   +  ++    + 
Sbjct: 452 LQAIVNPADNVNVRRILNVP------KRGLGVRAEGLIASYADAHDTTFFGAIEHMEQIE 505

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              A       V         +  +                             LS S  
Sbjct: 506 GMSARTTKPLGVFRDMMHGLADFAK----------------DHDTKPSEVVAEVLSKSGI 549

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +                L  L         ++             A    +++    + 
Sbjct: 550 LEELQRSEDPQDASRVDNLSQLQSVAAEFEQNTP-----------DATLAGFLETTALVA 598

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
           D + +  + E S  + ++    ++ L +  + L G+ +G +P   A              
Sbjct: 599 DSDQLPGENEDSGKVTMMTLHTAKGLEYPYVFLTGMEQGTFPHQRA-------------- 644

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGTDFF 728
           ++   +   +    +      +  +Y      R+        + S++L  +        +
Sbjct: 645 MEDTSELAEERRLAYVGITRAKRRLYVTRAAVRAQWGQANDMMHSQFLDEIPDELID--W 702

Query: 729 DNLKKRGQCYLDWTR 743
              +   +      R
Sbjct: 703 KRREAGVERMRASWR 717


>gi|257460429|ref|ZP_05625530.1| ATP-dependent DNA helicase PcrA [Campylobacter gracilis RM3268]
 gi|257441760|gb|EEV16902.1| ATP-dependent DNA helicase PcrA [Campylobacter gracilis RM3268]
          Length = 686

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 67/595 (11%), Positives = 157/595 (26%), Gaps = 105/595 (17%)

Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK---IASKYWTERLVELNASSPV 208
           LA  I   +      +D+  L   +      + + F      A K +   L   N     
Sbjct: 134 LAAKISTYKNSLIGPKDIDELLKGEEDELSRMYSGFYAHCADAYKRYEAYLAANNLVDFD 193

Query: 209 GYQIA------LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
              I             + + +     I +     +     +L+  +       +V+   
Sbjct: 194 DLLILPYKILSANERLCDEISR-RYVYITVDEYQDTNDIQFKLLQKLCAAHENLVVV--G 250

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       W     ++              Q+S  K +                   +  
Sbjct: 251 DDDQSIYGWRGARIENILNFKD--------QFSNVKFIK------------------LEQ 284

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                 +     +     N + L   + ++      + ++ +D E  EA  IA A++  L
Sbjct: 285 NYRSTDEILSAANELISHNKNRLGKSLTSMNGGGEKIEILRSDEESIEAAKIAEAIKKLL 344

Query: 383 DE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                  + A++     L+R ++  L R  I   +  G+            + L  +   
Sbjct: 345 SSGVAPSQIAVLYRVNALSRALEEGLNRAKIPYKMVGGVKFYERAEIKDTIAYLRLVNDE 404

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
           +D  ++  ++  P                       +       +  L+ L   R+ +  
Sbjct: 405 HDDFSMRRIINVP-----------------------KRGIGKVSLAKLEELSRLRLISLF 441

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
           +    P                L     Q +  L +   + ++    +   +  + T   
Sbjct: 442 DAFSEPDAG-------------LSAKAAQALAELKSGIASISALADTIKKIEALEPTFGL 488

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                            +E    L        E  +    +  E+++ ++ L D + +  
Sbjct: 489 KAYYASLPDGADRVANIDEFLAMLKD------EASNKPDFDLAEFLNELSLLSDQDAIM- 541

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
                  + I+    S+ L F+ L + GL EG +P                  L  +   
Sbjct: 542 ----GDAINIMSVHASKGLEFEHLFVIGLEEGFFPL-----------------LGDSNDI 580

Query: 681 IGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
             +    +      +  L  + +               R +   G    +  +++
Sbjct: 581 EEERRLAYVAITRAKRTLTLSFAASRFYRGKRERLDASRFIAEAGLVAKEPPREQ 635


>gi|332361915|gb|EGJ39717.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK49]
          Length = 762

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 67/627 (10%), Positives = 170/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  ++     +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRERLDDFTVTELVEAVLEKTGYAAALAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  +  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPAD-ESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRAS 587


>gi|255029542|ref|ZP_05301493.1| hypothetical protein LmonL_11498 [Listeria monocytogenes LO28]
          Length = 555

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 63/483 (13%), Positives = 141/483 (29%), Gaps = 33/483 (6%)

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
             L  +  L +     +       LA++   ++ EE   ED+                  
Sbjct: 97  AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKVHD 155

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           + +  + + E L   +        + L+  +        +  I+I G T        ++ 
Sbjct: 156 ISLIYQKYEELLA--DKFLENEDYLRLLAEKIADSDYLNQTEIVIDGFTSFSKQELTVIG 213

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +    +   +   L+      I + + E S    S+         Y+L +L      + 
Sbjct: 214 ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
           E+ K               ++ ++        +N                ++ + +A+N 
Sbjct: 265 EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311

Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
           R E   IA  +R         +  A++T +  +     +  +  + I   I     ++  
Sbjct: 312 RAEIEGIAREIRQQALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                + S L+AI     +  I   VK         +  L  R  + LE   L     + 
Sbjct: 372 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431

Query: 484 DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              + +   + R     +   +P    +  +     E+  L+V+ +      L   KT  
Sbjct: 432 WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 491

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599
                     +               E +    L    E+   ++S+L  + +E      
Sbjct: 492 EFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGEET 551

Query: 600 ANA 602
            + 
Sbjct: 552 LDL 554


>gi|156975570|ref|YP_001446477.1| exonuclease V subunit gamma [Vibrio harveyi ATCC BAA-1116]
 gi|156527164|gb|ABU72250.1| hypothetical protein VIBHAR_03302 [Vibrio harveyi ATCC BAA-1116]
          Length = 1164

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 103/925 (11%), Positives = 233/925 (25%), Gaps = 99/925 (10%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+ E  +  G  + +      L           +L         +   
Sbjct: 41  QILVQSPGMSQWLKMELAKEFGVAANLE---FPLPATFIWDMFTQVLADVPKRSAFNKEA 97

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE---- 163
              +L  L+      L +   +      L      +    LA+ +ADI D          
Sbjct: 98  MTWKLMHLLPGL---LNEASFEPLAR-YLQDDSDNSKLYQLAEKIADIFDGYLVYRPEWI 153

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
             WE    +   +    W        +  +   +  V L  S    ++  L     + L 
Sbjct: 154 ASWEAGQTVPELEDEHPWQ------PVLWQALYDHTVTLGQS--PYHRANLYEHFIDTLE 205

Query: 224 K------GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN----- 272
                       + + G +   P     +  +  H +  ++      +    + +     
Sbjct: 206 NFNGNFDHLPKRLFVFGISSLPPRYMDALKAIGEHIDVHLMFTNPCRYYWGEVRDRKFLA 265

Query: 273 --------------------TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                                 +E+       N     H       LL  +     D   
Sbjct: 266 RLAAKHRQHVVWQEDHSEVQGESEQLKGSLEENVVDELHTDVVGNSLLASMGKLGRDNMY 325

Query: 313 LGNVSNEMY-------GRSMVISKSFLPPDTSDMRNTDILENKIPN---IQKCFSDVALI 362
           L +              R  ++ +        +    D   +   +   +      ++L 
Sbjct: 326 LLSQLESHEIEAFVDVERDSLLHQLQADILNLEEHQDDEQIDSSQHKQVVSLGDKSLSLH 385

Query: 363 EADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINI 413
              +   E   +   L    D +     +   ++ AD N        +         I  
Sbjct: 386 SCHSPMREVEVLHDQLLAMFDADPTLKPRDIIVMVADINAYSPAIQAVFGNAPGERFIPY 445

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNAL 471
            IS       +   +    L+N          +  L++ P  L +FG  E    +AK  +
Sbjct: 446 SISDRTADQESPVLAAFMQLVNLPNTRCLASELLELLETPAILKRFGLSEDDFLQAKLWV 505

Query: 472 ELVALRGNKNSYDIMDLK-----------SLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
           E   +R   +S+   + +            +    +      +         S       
Sbjct: 506 EESGIRWGLDSHTGSEFELPETRQNTWQFGIQRMLLGYAMPESSGLFEAQEGSLSPYNEV 565

Query: 521 VLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
             +   +   +          +       SI  W +  V  L +    E      L  + 
Sbjct: 566 QGMGAELAGKLAHFIQQISQYRRKLSNVQSIDAWRETLVAMLDDFFSVELEGEMAL--KS 623

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
              TLS L  ++ +       +       +   + G  V  +      +     +  R +
Sbjct: 624 IRDTLSQLKEQLTDAAFDDALSPSIVSQYLQNKLSGTRVSQRFLAG-QVNFCTLMPMRSI 682

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
            F T+ L G+N+GV+P++     F     ++    ++             + +  + L  
Sbjct: 683 PFRTVCLLGMNDGVYPRSMPPEGFDLMTGRTKPGDRSRRDDDRYL-FLEAVLSAQQSLYI 741

Query: 700 TRSLRE--NNIPTIASRWLQRLLV------LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
           +   R   +N   + S  +  L+           D    +   G   L+    +      
Sbjct: 742 SYVGRSIQDNTERVPSVLVSELMEYCHQNYCLEGDQDQPVDDSGDKLLNELVNVHAMVPF 801

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                         +    + ++  Q        + R +        F  + D  +    
Sbjct: 802 SPSAFQGSHSSYAKEWIPAALTQSNQSQGHARGEFNRALDDYLLGATFPIELDLVELQRF 861

Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
           +   +     +R+         +M+   D  F    L  +           +  + +   
Sbjct: 862 WRLPVQYFFNRRLKVMFEPPLPVMED--DEPFVLGGLESYQMRDEL--LETLLETAITQP 917

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGI 896
                 ++       A+  +     
Sbjct: 918 SVKADVLKHFMSEQRAQGKLPVGAF 942


>gi|327489339|gb|EGF21132.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1058]
          Length = 762

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 67/627 (10%), Positives = 170/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  ++     +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRERLDDFTVTELVEAVLEKTGYAAALAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  +  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPTD-ESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRAS 587


>gi|325916758|ref|ZP_08179012.1| ATP-dependent DNA helicase UvrD [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537012|gb|EGD08754.1| ATP-dependent DNA helicase UvrD [Xanthomonas vesicatoria ATCC
           35937]
          Length = 723

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 65/710 (9%), Positives = 162/710 (22%), Gaps = 120/710 (16%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E+R         G +      I +   +           +        + +
Sbjct: 55  VTFTNKAAGEMRHRTDLQLRNGSRGMW---IGTFHGLAHRLLRLHWQDARLPEGFQVMDS 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R++                                       I+  + E ++
Sbjct: 112 DDQLRLVKRVVQSLELDESKYPPKQMSWW---------------------INEQKDEGRR 150

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +      +    W             + ER             +       +     
Sbjct: 151 PQHIQ----PEPNDDWTEVRRQ---VYAAYQERCDRSGLLDFAELLLRAHELLRDTPALL 203

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A       V    D       W     ++  
Sbjct: 204 AHYRARFREILVDEFQDTNAIQYAFVRVLAGETG--HVFVVGDDDQAIYGWRGAKVENVQ 261

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G  +  +       +      +     
Sbjct: 262 RFLKDFP--------------------------GAQTVRLEQNYRSSANILGAANAVIAH 295

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA       R  + +     + A++      
Sbjct: 296 NPDRIGKQLWTDSGDGDPIDLYAAYNEVDEARYAVERARQWVRDGGSYGEVAVLYRSNAQ 355

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L    +   +  G+            + L  +   +D  A    V  P     
Sbjct: 356 SRALEEALISEQLPYRVYGGMRFFERAEIKDALAYLRLLTNRSDDAAFERAVNTP----- 410

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        +    LD +        +  W++ +    + 
Sbjct: 411 --------------------------TRGIGDRTLDEVRRLARANALSLWEAAMLATQEN 444

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                  + L     LV     +          D   +     ++   +    L +    
Sbjct: 445 SLAARARNALAGFLSLVGQLHAETGQMELAERIDHVLMRSGLREHWAKESRGGLDSESRT 504

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E    L S+ S+             E +  +                  + ++    ++ 
Sbjct: 505 ENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMTLHSAKG 564

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + L GL +G++P   +              L+ + +   +    +      R  L
Sbjct: 565 LEFPIVFLVGLEDGLFPSARS--------------LEESGRLEEERRLAYVGITRARQKL 610

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
           +   +        +   + SR+L+ +      +    ++      L   R
Sbjct: 611 VLCYAESRRIHGQDNYNVPSRFLREIPRDLLNEVRPKVQVSRTASLGAAR 660


>gi|257453952|ref|ZP_05619228.1| ATP-dependent DNA helicase Rep [Enhydrobacter aerosaccus SK60]
 gi|257448617|gb|EEV23584.1| ATP-dependent DNA helicase Rep [Enhydrobacter aerosaccus SK60]
          Length = 679

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 75/697 (10%), Positives = 186/697 (26%), Gaps = 114/697 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +T    T +A +E+++   ++     T    + +      +    +LL         + 
Sbjct: 50  RITAVTFTNKAAREMKARVQKLLPSDKTKGLTVSTFHQFGLQFLRYELLH--------TP 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++    +            +  K L  +  +   +S A +  L      +I   + +   
Sbjct: 102 LKGNFSIMD---------AEDSKRLLMDLMVRDNMSGAESRELVGKAIKMISDWKNDLIP 152

Query: 166 WEDLHA--LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY-----QIALMRAE 218
            E         E                 + +   L   NA           ++     +
Sbjct: 153 PEKAADTLTDPEDM---------LFATLYQLYERNLRAYNAVDFDDLIVMPTRLLQENTQ 203

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +  A   L+  +        V+   D       W     ++
Sbjct: 204 VRDKWQNRIRYLLVDEYQDTNTAQYELIKLLVGVQPRFTVV--GDDDQSIYAWRGAKPEN 261

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
             +   +                 L + + +                  S+     ++  
Sbjct: 262 MALLQEDFP--------------KLKVVKLEQNY------------RSTSRILHAANSVI 295

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS---LDENKKKSALITAD 395
             N  + E K+ + +     + +I   N+ +EA  +A  +         + +  A++   
Sbjct: 296 TNNEHLFEKKLWSDKGHGELIRIINCRNDDDEAERVAKEIITHKLRNANDWQDYAVLYRS 355

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              AR ++ +L +  I   +S G           + S L  I    D  A   ++  P  
Sbjct: 356 NFQARMLEAQLRQLQIPYKLSGGTSFFARSEIKDIMSYLRLILNPEDDSAFLRIINTPKR 415

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G               V+                +L           +P   S   +E
Sbjct: 416 GLGPASLEKLGLFAQEHQVS----------------LLMASGHSGLTHVLPKKASGELKE 459

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             +        + Q   P+   K   + T             +  +++      ++   +
Sbjct: 460 FADFIERYTQELYQHPDPVPLVKQMIDETG-----------YIDLVRSEAKTPQQEKIRI 508

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              E             +       +A+    ++  +++ +    + E ++ + ++    
Sbjct: 509 DNIETLYASIQNLINRADDDDDRTIDAVIRKLVLLDMLEQQ---QEEENTNKVNLMTLHA 565

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L FD + + GL E + P   +                 AE    +    +      R
Sbjct: 566 AKGLEFDYVYIMGLEEELLPHKNSI---------------IAESIEEERRLMYVGITRAR 610

Query: 696 -HLIYTRSLRENNIP----TIASRWLQRLLVLGGTDF 727
             L  T + +         T  SR++  L        
Sbjct: 611 KELTMTMAAQRRAGGQMKTTTPSRFIDELPAEHIDAP 647


>gi|152965821|ref|YP_001361605.1| RecB family exonuclease [Kineococcus radiotolerans SRS30216]
 gi|151360338|gb|ABS03341.1| putative RecB family exonuclease [Kineococcus radiotolerans
           SRS30216]
          Length = 294

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 74/252 (29%), Gaps = 29/252 (11%)

Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
             P +A  R  S S     +  P     R I +L              RGTL H ++  L
Sbjct: 5   AHPGDAPRRALSPSRAADFMQCPLLYRFRTIDRLPET-----PSAAAARGTLVHAVLERL 59

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLP---------------PHIDIIWRHLFHKIS 864
                 + T      M +       +                         W      + 
Sbjct: 60  YDLPAAERTAARAGAMVEPQWRELLEREPRLQALFGAQPKPGTPTGDALARWLAGARALL 119

Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924
             +   E+  +  +E     +  ++ +E   + L G  DR+D+  +G + + DYKTG  P
Sbjct: 120 QKYFALEDPTR--LEPEAREMHVEVDLEDGPV-LRGIVDRLDVTPAGRMRVVDYKTGRAP 176

Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
            +    + +  Q+   A  L       +      +L  + L     +    ++    + +
Sbjct: 177 SETAEARAL-FQMRFYALVLWR-----LRGEVPLSLQLVYLGSGDVLRHTPDEGDLLATE 230

Query: 985 ELSEKSLKNLIE 996
                    +  
Sbjct: 231 RKVRALWDAIER 242


>gi|329576398|gb|EGG57911.1| conserved domain protein [Enterococcus faecalis TX1467]
          Length = 452

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/439 (11%), Positives = 111/439 (25%), Gaps = 95/439 (21%)

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
             +   ++  +       E+    L SL  + +        +   + +I    ++G    
Sbjct: 7   MWRLQAIEAGQLETARNHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYS 66

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE- 678
                   + +     +R          G+ E ++P+       LS   +  +N    E 
Sbjct: 67  KVPTAIDQVQVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTEN 126

Query: 679 --------KYIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDF 727
                   + I Q  +   +        L  T  S+++       S + + +        
Sbjct: 127 QYLRGTTGRKIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPV 186

Query: 728 FDNLK-----------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY------ 770
           F+  +                Y     +L    +Q    +    P      +        
Sbjct: 187 FEKNETTIFDDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIA 246

Query: 771 ----------------------------------SFSEIKQLINDPYAVYARRILKLDFI 796
                                             S S ++      Y  ++R  L+L   
Sbjct: 247 PLAKQVFESLTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKER 306

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH--- 851
             F         G  FH  + +  K      +N  E+      ++        L      
Sbjct: 307 DVF--GLSPAATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFS 364

Query: 852 ----------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KM 889
                     I         K+  S+    +  +S +  +   +              ++
Sbjct: 365 VLTTSSRMNYIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLEL 422

Query: 890 AIESIG-IHLTGFADRIDL 907
            +++ G IH+ G  DRID 
Sbjct: 423 PLKNQGKIHVRGKIDRIDQ 441


>gi|289670782|ref|ZP_06491857.1| DNA-dependent helicase II [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 728

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 63/693 (9%), Positives = 159/693 (22%), Gaps = 120/693 (17%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E+R         G +      I +   +           +        + +
Sbjct: 60  VTFTNKAAGEMRHRTDLQLRNGSRGMW---IGTFHGLAHRLLRLHWQDARLPEGFQVMDS 116

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R++                                       I+  + E ++
Sbjct: 117 DDQLRLVKRVVQSLELDESKYPPKQMSWW---------------------INEQKDEGRR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +      +    W             + ER             +       +     
Sbjct: 156 PQHIQ----PEPNDDWTEVRRQ---VYAAYQERCDRSGLLDFAELLLRAHELLRDTPALL 208

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A       V    D       W     ++  
Sbjct: 209 AHYRARFREILVDEFQDTNAIQYAFVRVLAGESGN--VFVVGDDDQAIYGWRGAKVENVQ 266

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G  +  +       +      +     
Sbjct: 267 RFLKDFP--------------------------GAQTVRLEQNYRSSANILGAANAVIAH 300

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA  +    R  + +     + A++      
Sbjct: 301 NPDRIGKQLWTDSGDGDPIDLYAAYNEVDEARYVVEGARQWVRDGGSYGEVAVLYRSNVQ 360

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L    +   +  G+            + L  +   +D  A    V  P     
Sbjct: 361 SRALEEALISEQLPYRVYGGMRFFERAEIKDALAYLRLLTNRSDDAAFERAVNTP----- 415

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        +    LD +        +  W++ +    + 
Sbjct: 416 --------------------------TRGIGDRTLDEVRRLARANALSLWEAAMLCTQQN 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                  + L     LV     +          D   +     ++   +    L +    
Sbjct: 450 TLAARARNALATFLSLVGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGLDSESRT 509

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E    L S+ S+             E +  +                  + ++    ++ 
Sbjct: 510 ENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMTLHSAKG 569

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + L GL +G++P   +              L+ + +   +    +      R  L
Sbjct: 570 LEFPIVFLVGLEDGLFPSARS--------------LEESGRLEEERRLAYVGITRARQKL 615

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVLGGTD 726
           +   +        +   + SR+L+ +      +
Sbjct: 616 VLCYAESRRIHGQDNYNVPSRFLREIPRDLLNE 648


>gi|167622483|ref|YP_001672777.1| DNA-dependent helicase II [Shewanella halifaxensis HAW-EB4]
 gi|167352505|gb|ABZ75118.1| DNA helicase II [Shewanella halifaxensis HAW-EB4]
          Length = 721

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 80/690 (11%), Positives = 174/690 (25%), Gaps = 123/690 (17%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
           +     T +A +E+R    ++ G   + +  I +   +           + NL      +
Sbjct: 57  ILAVTFTNKAAKEMRERVEKVAGGNMSRM-WIGTFHGLAHRLLRTHYKDA-NLPESFQIL 114

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
               +L RLI      L    K   P           +                    + 
Sbjct: 115 DSDDQL-RLIKRILKSLNLDEKQYPPRQAQGYINGKKDL-----------------GLRP 156

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG- 225
             +           + +  + LKI  + + +                L+RA    L K  
Sbjct: 157 SHI-------DAGGFPIEQNLLKI-YQIYQDSCDRAGLVDFAEI---LLRAHELWLNKPH 205

Query: 226 -------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                      I++     +       +  +A      +++   D       W     ++
Sbjct: 206 ILDHYQDRFKHILVDEFQDTNAIQYAWIRVLAGSTANVMIV--GDDDQSIYGWRGAQVEN 263

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
            +   ++                               +  +              +   
Sbjct: 264 LHKFLADFPA--------------------------AQTIRLEQNYRSSGNILNASNQLI 297

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADR 396
             N D +  K+    K    + L  A NE +EA  I   +    DE  K    A++    
Sbjct: 298 ANNPDRMGKKLWTDDKDGEPIGLYCAFNEMDEARFIVGRITDWQDEGGKLEDCAILYRSN 357

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  L   GI   I  G+              L  I   ND  A   +V  P   
Sbjct: 358 AQSRVLEEALLHKGIAYRIYGGLRFFERQEIKDAMGYLRLINNKNDDAAFERVVNTPTRG 417

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G     + R     + +                                   S    E+
Sbjct: 418 IGDRTLEIIRTTARQQEM------------------------------TLWEASLRLIEE 447

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
           K L     + +   +  ++  + + +      +     + +            +    + 
Sbjct: 448 KVLNGRAANAVRGFMDLIIAMRMDSDELSLQRTTDHVIQTSGLKAMYEAEKSEKARARVE 507

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             EE  T +  F    E     + NA      ++            E +  + ++    +
Sbjct: 508 NLEELVTAARSFVMPEEIEDMGELNA-----FLSHAALEAGEGQADEFTDAVQLMTLHSA 562

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-R 695
           + L F  + + G+ EG++P   A +                ++   +    +       +
Sbjct: 563 KGLEFPMVFMAGVEEGLFPSQMAIDEG--------------DRLDEERRLCYVGMTRAMQ 608

Query: 696 HLIYTRSLRE----NNIPTIASRWLQRLLV 721
            L  T +              SR+++ +  
Sbjct: 609 KLYITYAESRRIYGRESFARPSRFVKEIPE 638


>gi|254788455|ref|YP_003075884.1| DNA-dependent helicase II [Teredinibacter turnerae T7901]
 gi|237683747|gb|ACR11011.1| DNA helicase II [Teredinibacter turnerae T7901]
          Length = 728

 Score = 83.8 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/718 (9%), Positives = 161/718 (22%), Gaps = 116/718 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T +A +E+R     + G +  + P    +  +    F          +   + 
Sbjct: 56  QVMAVTFTNKAAREMRERLTHLIGDR--LGPR--GVHSMWVGTFHGIAHRLLKAHWQEAG 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           + +  ++        +    +IK +Y    L     P             I+  + E  +
Sbjct: 112 LSQNFQIMD-----SDDQLRLIKRIYQTLALDDSRWPVKQAQWY------INNQKDEGLR 160

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
                 +            A  +K+  + + E              +       ++    
Sbjct: 161 P---AHIDPGHDP-----FAQTMKLVYEAYEEACENAGLVDFAELLLRSHELWLKNKSLL 212

Query: 226 TKG-----PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    I++     +       +  +A H     V    D       W     ++  
Sbjct: 213 DHYQRRFVAILVDEFQDTNSVQYAWLRVLAGHA--CAVTAVGDDDQSIYGWRGAKIENIQ 270

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
              ++                                  +       S      +     
Sbjct: 271 QFENDFA--------------------------PVGVTRLEQNYRSTSTILSAANAVIEN 304

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS----ALITADR 396
           N   L   +         + L    NE++EA  I   ++  L E+  ++    A++    
Sbjct: 305 NFGRLGKNLWTDGGEGEHIDLFAGFNEQDEARYIVERVQDYLREDGSRARTDCAVLYRSN 364

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++    R  +   I  G      L      + L  I    D  A+  ++  P   
Sbjct: 365 AQSRILEEAFLRENVPYRIYGGQRFYDRLEIKNALAYLRLISSRQDDAALERVINTP--- 421

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                         +    +   +              + A +                 
Sbjct: 422 -----------TRGIGAKTIESIRIFARDQGCSLYAAMQAALRNKV-------------- 456

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                         +   V            L++ +  +L    L+   L E  +     
Sbjct: 457 ------FSARAAGALNGFVALIDELEENVAQLTLGEAAEL---VLEKSGLVEFHRKEKGE 507

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             +                           + +             E    + ++    +
Sbjct: 508 KGQARVENLEELVNACRLFEPQDEEVTPLQEFLANAALDAGDGQADEFEDAVQMMTLHSA 567

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-R 695
           + L F  + L G+ E ++P                ++L    +   +    +        
Sbjct: 568 KGLEFPLVFLAGMEENLFP--------------HKMSLDEPGRLEEERRLCYVGITRAMD 613

Query: 696 HLIYTRSLRENNIPTI----ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
            L+ + +              SR+++ +      +               +     T 
Sbjct: 614 KLVISYAESRRMHGNENFNAVSRFIREIPQNLVREVRIQSTVSRPASYSSSSATRQTE 671


>gi|291296725|ref|YP_003508123.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
 gi|290471684|gb|ADD29103.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
          Length = 920

 Score = 83.8 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 94/939 (10%), Positives = 215/939 (22%), Gaps = 124/939 (13%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            L  +     T++A  ELR        +       +  +          +          
Sbjct: 29  PLRRIAGVTFTRKAADELRVRVAAAIEEVLQTGRHLSFVASGGSRAAFQEAAREIAGATL 88

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN----LADII-D 157
            +    + +  RL     +  PD       E+            +LA++    L  ++ D
Sbjct: 89  STIHGFMAQCLRLAAPLLHLDPDFSMLGDWEAQAIFEEEWQTLRYLAQDAHHPLFGLVSD 148

Query: 158 IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA--SSPVGYQIALM 215
            +           +                L++    +      L A   SP   +   +
Sbjct: 149 ELTEPLLHLFSRRSQAEVFEPAAGEANQHLLQVYQTVYAAYEARLGANLLSPSELERKAL 208

Query: 216 RAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
                  A   +      +++       P      + +        ++   D       +
Sbjct: 209 ELARNDRAMKRVLERVRVLLVDEYQDVNPVQGAFFAALEQARLPIEIV--GDPKQSIYAF 266

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                                      L       R  V+ L  ++  +    +      
Sbjct: 267 RNADVSVFRKALREGKSE-------PPLTHSYRHSRVLVRFLNGLTGYLAKEGLGFGLEE 319

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-NKKKSA 390
            PP          LE      +    ++        ++EA  +A  L          + A
Sbjct: 320 APPVEGVRPEQGRLEVHWVVGELPLEEL-------RKQEARVLAGRLAALRGPIEYSQMA 372

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++       R ++  L    I   +  G           L   L A       +++A  +
Sbjct: 373 VLVRSYGSVRFLEEALAEAQIPYVLLQGRGYYERQEVRDLYHALRAALDP-RGLSLAVFL 431

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
           + P  +                                                +   Q 
Sbjct: 432 RSPFGQHT---------------------------------------EAGPLKPLELPQI 452

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                  +    L  H       L   +           +    ++    ++   +D   
Sbjct: 453 EGVLRADDPLGRLAQHWPSVYERLRQIQAQVR-------LMAPLEVLKFLIRAPLMDGRP 505

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
               L      +   ++ + +         N    ++ +  L          +    + I
Sbjct: 506 YHDFLEP----RARENVDALLFYFAPRPPQNLEGLLERLELLSRQADAGDVPQSGEGVQI 561

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA------------- 677
           L   +++ L +  + +  L      +                 L+               
Sbjct: 562 LTVHQAKGLEWPLVAVFDLGRMNVHRPQPLYLGQGPNGGDGGRLRRWVALPETPQFEAFR 621

Query: 678 -----EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                ++        +  A+  R  +   +   +  P    + L+ + +   +  +    
Sbjct: 622 QQVKLQEEEESYRLLYVAASRARDTLLLTASASHGQPEGWGKVLEAMNLGPASKPYHRPD 681

Query: 733 KRGQCYL----DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
              Q +        R L                  E  P  +S S +K+L  +P      
Sbjct: 682 FHLQTWPYQPAPPVRVLSQPAPLQPSPWVDARFEPEPFPPLFSPSALKRLEAEP------ 735

Query: 789 RILKLDFIPHFKKDPD-RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
             L L      +  P      GTL H  I +  +    ++   +                
Sbjct: 736 --LPLPDPEEGEAVPGRARAIGTLVHYAIGQNWRPDNPQHLANLEAQEVMF--------P 785

Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL 907
             P            +   + +          +        +A+        G  DR+  
Sbjct: 786 FGPDERRGIMAEVQALLEHY-QELLGRALPWPRDEDYPEFAVALPLGSTVWQGVIDRLYR 844

Query: 908 LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
           +      + DYKT     +E   +    QL +  AA++ 
Sbjct: 845 VG-QQWYLEDYKT----DQEMRPERYLVQLGIYLAAIRQ 878


>gi|227115452|ref|ZP_03829108.1| exonuclease V subunit gamma [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 1042

 Score = 83.8 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 83/754 (11%), Positives = 182/754 (24%), Gaps = 75/754 (9%)

Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
           ++     L            L    +      LA  +AD+ D       +W        +
Sbjct: 5   LMHLLPDLLAQPDFAALNHYLQDDDNQRKLHQLAGRVADLFDQYLIYRPEWIKAWQEGKQ 64

Query: 176 -KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--III 232
                   L    L  A   +T  L +             + A  +        P  + I
Sbjct: 65  VDDLGGNQLWQSALWRALVDYTRELAQPEWHH-AILYQRFITALEQAKTCPKGLPPRVFI 123

Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNITSSN 285
            G +   P   + ++ +A H +  ++      H  + I +           +  +     
Sbjct: 124 CGISALPPIYLQALNALARHIDVHLLFTNPCRHYWSDIQDYKFLAKLKARNRRLHRFDGE 183

Query: 286 TTYSTHPQYS-----------------LAKLLDFLDIKREDVKRLGNVSNEMYG------ 322
            T  T P +                     LL        D   L    + +        
Sbjct: 184 QTDETRPLFRDPSHAEALFNDDGKQSINNPLLASWGKLGRDNLYLLADLDSVQEIDAFVE 243

Query: 323 ---------RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
                        I +       +    T     +   +      +      + + E   
Sbjct: 244 SDGENLLQTLQRDILELEDHAVVAVSHETQNTSMQKRLLALDDRSIDFHACHSPQREVEV 303

Query: 374 IAIAL----RMSLDENKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTT 424
           +   L        +   +   ++ AD +        +         +   IS        
Sbjct: 304 LHDRLLAMMADDPELMPRDVIVMMADIDSYTPFIQAVFGNAPDNRYLPFAISDQRARHAH 363

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNS 482
                + SLL+          +  L++ P    +FG  E+ L R +  +    +R   + 
Sbjct: 364 PALQAVISLLDLPTSRFTAEQVLALLEVPALAARFGIQEEGLRRLRLWVVESGVRWGLDD 423

Query: 483 YDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            ++ DL        +                           + +  L+  +   +  L+
Sbjct: 424 DNVRDLMLPPTGQHTWRFGLTRMLLGYAMDSQVGDWQGVLPYDESSGLIAELAGQLAELL 483

Query: 536 -TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                 +        + DW  L    ++     +      L   E+          +   
Sbjct: 484 MQIHHWRQRLSQPRVLVDWLPLCRELIETFFEADSETEAALALVEKQWQYVIGMGTMAHY 543

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
              +  +     D ++R +D E +  +     ++     +  R + F  + L G+N+GV+
Sbjct: 544 PQQVPISR--LRDELSRRLDQERLSQRFLAG-SINFCTLMPMRSIPFKVVCLLGMNDGVY 600

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIAS 713
           P+      F   +M   +      +         E     +H L  +   R     T   
Sbjct: 601 PRTLPPLGF--DLMGRKIKRGDRSRRDDDRYLFLEALLSAQHKLYISYIGRSIQDNTRRY 658

Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
             +  L+         +    G   LD     +   K       +            S  
Sbjct: 659 PSV--LVSELTEYIAQSYVLPGDEALDIDSSAERVVKHLC---REHSRMPFDANNFLSAP 713

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
           +          + A            ++      
Sbjct: 714 QPLSFAA--EWLAAANRKGEAQPDFDREALSARA 745


>gi|121636550|ref|YP_976773.1| putative exonuclease V (gamma chain) recC [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224989022|ref|YP_002643709.1| putative exonuclease V gamma chain [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260185510|ref|ZP_05762984.1| putative exonuclease V gamma chain [Mycobacterium tuberculosis
           CPHL_A]
 gi|260203799|ref|ZP_05771290.1| putative exonuclease V gamma chain [Mycobacterium tuberculosis K85]
 gi|289446186|ref|ZP_06435930.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           CPHL_A]
 gi|289573233|ref|ZP_06453460.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis K85]
 gi|121492197|emb|CAL70664.1| PRobable exonuclease V (gamma chain) recC [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224772135|dbj|BAH24941.1| putative exonuclease V gamma chain [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289419144|gb|EFD16345.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           CPHL_A]
 gi|289537664|gb|EFD42242.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis K85]
          Length = 1097

 Score = 83.8 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 83/860 (9%), Positives = 203/860 (23%), Gaps = 56/860 (6%)

Query: 39  LNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS-LGDVVEEKFTADLLLSY 97
             P   A   + V  +   + L      + G        + + +     +   A++  + 
Sbjct: 25  PQPDPFAQELVLVAARGVERWLSQRLSLVLGCGPGRADGVCAGIAFRNPQSLIAEITGTL 84

Query: 98  NLNPPVSNIQRLLEL----ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
           + +P          L    A L   W   L   +         +          +A+ LA
Sbjct: 85  DDDPWSPEALAWPLLAVIDASLDEPWCRTLASHLGHFATTDAEAELRRGRR-YSVARRLA 143

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            +      +         L               L      W   +  + A  P      
Sbjct: 144 GLFASYARQR------PGLLAAWLDGDLGELPGDLAWQPPLWRALVTTVGADPPHVRHDK 197

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            +    +         + + G T       +L+  +A H +  + LP         +W  
Sbjct: 198 TIARLRDGPADLPAR-LSLFGHTRLACTDVQLLDALAVHHDLHLWLPHP----SDELWRA 252

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK-REDVKRLGNVSNEMYGRSMVISKSFL 332
           +               T  + +   LL+ L    RE  + L                  L
Sbjct: 253 LAGFQGADGLLPRRQDTSRRAAQHPLLETLGRDVRELQRALPAARATDEFLGATTKPDTL 312

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKK 388
                     +       ++      V +        +   +   L   L++      + 
Sbjct: 313 LGWLQADIAGNAPRPAERSLSDADRSVQVHACHGPARQIDVLREVLLGLLEDDPTLQPRD 372

Query: 389 SALITADRNLARRVKLE----------LTRFGINIDISAGIPLSTT-LHSSILTSLLNAI 437
             ++  D +    + +                      A   L+ T    S+   LL   
Sbjct: 373 IVVMCPDIDTYAPLIVAGFGLGEVAGDCHPAHRLRVRLADRALTQTNPLLSVAAELLTIA 432

Query: 438 FKLNDFMAIATLVKHPLAK----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                   +  L +    +    F   +            +    +        L ++V 
Sbjct: 433 ETRATASQLLNLAQAAPVRAKFGFADDDLDTITTWVRESNIRWGFDPTHRRRYGLDTVVH 492

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
           +      +        S  S+   + A+ L D     +                +     
Sbjct: 493 NTWRFGLDRILTGVAMSEDSQAWLDTALPLDDVGSNRVELAGRLAEFVERLHHVVGGLSG 552

Query: 554 TKLTVTCLQNVCLDEHR--KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            +  V  L  +           + W   + +   +       + +       +   ++  
Sbjct: 553 ARPLVAWLDALATGIDLLTACNDGWQRAQVQREFADVLARAGSRAAPLLRLPDVRALLDA 612

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            + G   +    ++ TL +   +  R +    + L GL++GV+P+ +  +      + + 
Sbjct: 613 QLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVFPRLSHPD---GDDVLAR 668

Query: 672 LNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             +        +       A G   + L+ T +  +          +    +L   D   
Sbjct: 669 EPMTGERDIRSEDRQLLLDAIGAATQTLVITYTGADERTGQPRPPAVPLAELLDALDQTT 728

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
           +   R +  +    +                P         +          P A  + R
Sbjct: 729 SAPVRERILVTHPLQPFDRKNVTPGALLGAKPFTFDPAALAAAQAAAGKRCPPTAFISGR 788

Query: 790 ILKLDFIPHFKKDP------DRTDRGTLFHNIITELIKKRINKNTPEINHLM-----KQI 838
           +           D                   +   +    +    +++ L      +++
Sbjct: 789 LPAPPAADVTLADLLDFFKDPVKGFFRALDYTLPWDVDTVEDSIPVQVDALAEWTVGERM 848

Query: 839 IDSHFEKENLPPHIDIIWRH 858
           +       +        WR 
Sbjct: 849 LRDMLRGLHPDDAAHSEWRR 868


>gi|326780309|ref|ZP_08239574.1| hypothetical protein SACT1_6184 [Streptomyces cf. griseus XylebKG-1]
 gi|326660642|gb|EGE45488.1| hypothetical protein SACT1_6184 [Streptomyces cf. griseus XylebKG-1]
          Length = 281

 Score = 83.8 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 73/253 (28%), Gaps = 32/253 (12%)

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             P     R I KL          +   RGTL H ++  L        T      +     
Sbjct: 3    CPLLYRFRVIDKLPEK-----PSEAATRGTLVHAVLERLFDAPAADRTAPRARALIPGQW 57

Query: 841  SHFEKENLP----------PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                +                    W     ++   +   E+  +  +E     +  +  
Sbjct: 58   DRLLESKPELSDLFAGDTEGERLTRWLGEAERLVDRWFSLEDPTR--LEPAERELFVETE 115

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            +ES G+ L G  DR+D+  SG V I DYKTG  P+          Q++  A  +      
Sbjct: 116  LES-GLRLRGVIDRVDVAPSGEVRIVDYKTGKAPRP-EYSDGPLFQMTFYALVIWR---- 169

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
             +       L  + L     +                E+  + L+ +   +    +    
Sbjct: 170  -LKGVVPRRLQLVYLGSGDVLTYDPVVAD-------LERVERKLLALWDAISLATETGDW 221

Query: 1011 HLRLSEKSNIQSE 1023
              R ++      +
Sbjct: 222  RPRPTK-LCGWCD 233


>gi|332366342|gb|EGJ44094.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1059]
          Length = 762

 Score = 83.8 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 69/627 (11%), Positives = 171/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                           +D       +I    ++  +    +  +
Sbjct: 413 ------------------------KRGVGPGTVD-------KIRDFASSQEISLLDASSN 441

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                +       +      L+  +   +       +    + T                
Sbjct: 442 ILLSPVKGKAAQAVYDFANMLLDLRERLDDFTVTELVEAVLEKTGYAAALAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  +  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESSDNPAD-ESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRAS 587


>gi|283778550|ref|YP_003369305.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
 gi|283437003|gb|ADB15445.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
          Length = 800

 Score = 83.8 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 79/752 (10%), Positives = 184/752 (24%), Gaps = 129/752 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     +  +++     + +          +   L          
Sbjct: 71  QILALTFTNKAADEMRGRLERLAPRQAVW---MGTFHRFCARMLRSYAELV--------G 119

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++    +       R  L   + +   +   + P + A AI  AKN              
Sbjct: 120 LRENFSIYD-TDDSRKILQIALDEEGIDLTHTSPDAIAQAISWAKN-------------- 164

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAE 220
             +L      +           ++     + + ++  +A       + +        E  
Sbjct: 165 --NLVTADRYEPRRG-HAIGGIVEKVYPTYQKLMLRSSAVDFDDLLVHVAILLKENPEVR 221

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
             +      I++     +  A   ++  ++       V    D       W      +  
Sbjct: 222 RQLDERYRYIMVDEYQDTNLAQYTIVRALSIDHPNLAVT--GDPDQSIYGWRGANLSNIL 279

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P+  + +L       +  +     +      R                 
Sbjct: 280 EFEK-----DYPKVKVVRLEQNYRSTKSILHIADQLIRHNIRRK---------------- 318

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALITADRN 397
                E  +       + V L     +R+EA +IA  +   +       +  A+      
Sbjct: 319 -----EKDLFTDNPQGNRVRLATFPTQRDEAETIAEEIAHEVRTGKRRPRDFAIFYRTNA 373

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-LAK 456
           L+R+++  L    I   I  G+          + + L  +       A+  ++  P    
Sbjct: 374 LSRQIEHALREQVIPYQIVNGLEFYQRKEIKDVLAYLQLVNNPRSDAALLRIINTPTRGI 433

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                  +        +  L   + +  I  L       +A       +           
Sbjct: 434 GKSTIAKIQEVARDRAIPLLDAARMAGTISGLAKKSAVAVAKFVAMLDLIG--------- 484

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                       +   P+        +  G   + +              +       L 
Sbjct: 485 -----------TKATAPVEELVGYVLTETGYREVLE------------NSEAEEDHERLA 521

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             EE  T +S F      G+ ++         +               S  + ++    +
Sbjct: 522 NLEELLTAASEFDLRNPGGAGLE-------QFLEDSSLVADTDAFESDSDKVTMMTLHAA 574

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + +    EG+ P   ++        +  L      +               + 
Sbjct: 575 KGLEFPAVYIVACEEGLLPHERSRRDEEKLEEERRLLFVGITR-------------AMQD 621

Query: 697 LIYTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNL-KKRGQCYLDWTRKL------ 745
           L  T +     R    P +AS +L  L          N+ +     YL W  +       
Sbjct: 622 LTLTWAQYRMFRGQQAPAVASSFLMELPRHEMELIGGNMGRGSAPRYLAWDEESQLSPED 681

Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
           D     P  +      P+          E++ 
Sbjct: 682 DDLEFPPREQDALIDAPMYDDVNQLEPEEMQT 713


>gi|116669378|ref|YP_830311.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24]
 gi|116609487|gb|ABK02211.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24]
          Length = 830

 Score = 83.8 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 77/712 (10%), Positives = 188/712 (26%), Gaps = 99/712 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R     + G ++ I+  I +           +   +  L    S
Sbjct: 107 GEILAITFTNKAAAEMRERIEALVGGRAKIM-WISTFHSSCVRILRQE-AANVGLKSNFS 164

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                  L RL+      L    K   P                 K +   I  ++ E  
Sbjct: 165 IYDSADSL-RLVTQVSKSLDLDPKKFAP-----------------KAIQHKISALKNELI 206

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTE--RLVELNASSPVGYQIALMRAEAEHL 222
             +   +        +    AD  K  ++   +   +   +  +   Y      A AE  
Sbjct: 207 DADSYSS-SANHNDPFESAVADVFKGYTQRLRQANAMDFDDLIAETVYMFRAFPALAESY 265

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKSTNI 281
            +     +++     +  A   L+  +     GA  +    D       +     ++   
Sbjct: 266 RR-RFRHVLVDEYQDTNHAQYALVREIVGEGPGASELTVVGDSDQSIYAFRGADIRNIVE 324

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                    +P     KL       +  +    +V +    R                  
Sbjct: 325 FEK-----DYPNARTIKLEQNYRSTQNILTAANSVISRNPNR------------------ 361

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITADRNL 398
               E ++   +     +     +NE +EA  IA     L+   +      A+       
Sbjct: 362 ---PEKRLWTAEGEGHKIIGYVGENEHDEAQFIAKEIDRLQDEDNLRPGDVAIFYRTNAQ 418

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L R G+   +  G             + L  +   +D + +  ++  P    G
Sbjct: 419 SRSIEDVLVRVGLPYKVVGGTRFYERKEIKDALAYLRVLVNPDDDVNLRRVLNEPKRGIG 478

Query: 459 FPEKYLSRAKNALELV-ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
              +    A    E    +   + +     + +  ++ +             +  S    
Sbjct: 479 DRAEGAVAALAERERTSFMAAARRADQAPGMATRSVNAVLGFVKLLDDLAEVASGSGAAA 538

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            L  +L       +  L +  T+        ++++   +     Q               
Sbjct: 539 ALEAVLEQTGY--LAGLRS-STDPQDESRVENLAELVAVVREYEQENPEGS--------- 586

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                 L +   ++       +       DI   + + +       +   + ++    ++
Sbjct: 587 ------LGAFLEQVSLVADADQIPDAPGADIDAAVAEAK-------RLGVVTLMTLHTAK 633

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-H 696
            L F  + L G+  G++P   +                  ++   +    +      R  
Sbjct: 634 GLEFPVVFLTGMEHGLFPHQRS--------------ATDPKELAEERRLAYVGLTRARKR 679

Query: 697 LIYTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           L  TRS        +    AS++++ +         +   ++   +      
Sbjct: 680 LYVTRSEVRSMWGQSQYNPASQFIEEIPAELVEWRREGTSRQVSGWGSGAAI 731


>gi|114326871|ref|YP_744028.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1]
 gi|114315045|gb|ABI61105.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1]
          Length = 759

 Score = 83.8 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 79/754 (10%), Positives = 188/754 (24%), Gaps = 133/754 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKK--STILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            V     T +A +E+R     I G+K     L    +   +                   
Sbjct: 74  QVLAVTFTNKAAREMRERVGAILGEKVEGLWL---GTFHALCARM--------------- 115

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET-- 161
             ++R  E   L   +     D    L  +   +  +           L  ++  I+   
Sbjct: 116 --LRRHAEYVGLSSNFSILDSDDQMRLLKQVAETFRVDTKRWP-----LPGLMAAIQRWK 168

Query: 162 -EEKKWEDLHALKNEKY-GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
                 E +   ++  Y     +          + + ERL  LNA+      + +     
Sbjct: 169 DRGLTPERVTPAEDTDYASGHAVA-------IYRAYQERLRALNAADFGDLLLFMTEILR 221

Query: 220 EHLMKGTK-----GPIIIAGSTGSIPATARLMSTVANHPN--GAIVLPGLDCHIPTAIWN 272
                 ++       I++     +       +  +A         +    D       W 
Sbjct: 222 SRPEVLSQYHRAFRYILVDEYQDTNLVQYLWLRLLAQGRQNGDQNICCVGDDDQSIYSWR 281

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++      +              +  L+        +   +  +   +        
Sbjct: 282 GAEVENILRFEKDFPG---------AHVVRLESNYRSTAPILGAAAGLIAHNE------- 325

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSA 390
                          +          V +I   +  EEA  +   +  +        + A
Sbjct: 326 --------GRLGKTLRPGRANAEGEKVDVISLWDSDEEARMVGDRIETARRNRHPLSEIA 377

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++       R  +  L   G+   +  G+            +    + + +D +A   +V
Sbjct: 378 VLVRAGFQTRSFEERLITLGVPYRVIGGLRFYERAEIRDAIAYARLLAQPSDDLAFERIV 437

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P    G                                         + ++      +
Sbjct: 438 NVPRRGVGEVALRGLH------------------------------ERARADSVPLLEAA 467

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                D +L   + + I   +  L +++    S     +++     +             
Sbjct: 468 SRQLADGKLRGKVKEGIAAFLQGLESWRRMLGSEGHVATMATMLDESGYTEMWKQDKSPE 527

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
               L   +E     + F  +             ++D ++ +++ E    +      + +
Sbjct: 528 APGRLENLKELLRAMAEFDAL-----------PGFLDHVSLVMENE----QDAGDDKVSL 572

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L FD + L G  EG++P   A +         +  LK+ E+    A      
Sbjct: 573 MSLHAAKGLEFDMVFLPGWEEGLFPHQRALD---------EGGLKSLEEERRLAYVGLTR 623

Query: 691 ANGTRHLIYTRSLRENN----IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD--WTRK 744
           A      + + +            I SR+++ L           + +R Q          
Sbjct: 624 ARQ--KAVISHAANRRIYANWQSAIPSRFIEELPPDCIQSQGSAVMEREQRLRGGFGAGV 681

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                   H  R       EA  +    S+  + 
Sbjct: 682 QFPMLATRHAPRAAAPRVREAWEQPGRASQAGRF 715


>gi|9625499|ref|NP_039733.1| predicted 33.2Kd protein [Mycobacterium phage L5]
 gi|465349|sp|Q05283|VG69_BPML5 RecName: Full=Gene 69 protein; AltName: Full=Gp69
 gi|579143|emb|CAA79445.1| gene 69 [Mycobacterium phage L5]
          Length = 290

 Score = 83.8 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 86/296 (29%), Gaps = 69/296 (23%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S S++ Q    P A    RI K+   P          +GT FH +     K         
Sbjct: 12   SVSQLNQYTRCPQAYKLARIDKVWARPAAWLP-----QGTAFHTVAEVYEKALAEGR-EM 65

Query: 831  INHLMKQIIDSHFEKEN-------------LPPHIDIIWRHLFHKI------SHSFLEHE 871
                 ++I    + K+                       R +  +          F+   
Sbjct: 66   SLERAQEIFREEYAKDIGALCDETPNFEWWFWSGPYNGERDIERRFHLGLEQVEKFIAWR 125

Query: 872  EKIQSSIEKI------------------------FVNIPAKMAIESIGIHLTGFADRIDL 907
            +     I                            + +P  + ++  GI + GF D + +
Sbjct: 126  KDKGQQIWTTPGRGICSTEAWKDTNCKECEQPKPAIELPFNIELD--GIRVRGFIDAVVV 183

Query: 908  LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
            + +G + + DYKTG++P         D QL + A A+       ++  K  + F   +  
Sbjct: 184  V-NGELRVRDYKTGNSP-------GDDFQLGVYALAVAMT--YDVEAPKTGDYF---MAG 230

Query: 968  KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
            K  I          + D   E+  +   E+   +Q G+                 +
Sbjct: 231  KKGIKAKPTAPYDLT-DWTRERITERFHEVEARIQAGDF----EPLPEPDKCGFCD 281


>gi|260575782|ref|ZP_05843778.1| double-strand break repair helicase AddA [Rhodobacter sp. SW2]
 gi|259021935|gb|EEW25235.1| double-strand break repair helicase AddA [Rhodobacter sp. SW2]
          Length = 1090

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 91/875 (10%), Positives = 200/875 (22%), Gaps = 109/875 (12%)

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            +      A       L P + ++ R +E AR   +               +      +  
Sbjct: 290  LGSFPTKATQPKLGPLLPRLQDLMRRVEAAREDRMALLAADRTRILHAFAAAFLPRYAAR 349

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                 A +  D+I   +                    W+L      I      + ++   
Sbjct: 350  KLARGALDFDDLIARAKALLTDPS----------VAQWVLFRLDGGI------DHILVDE 393

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
            A      Q  ++R  A+    G     +            R +  V +         G D
Sbjct: 394  AQDTSPEQWDVIRLLAQEFTAGRGARDV-----------PRTIFVVGDKKQSIYSFQGAD 442

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                 A+ +        + +          +  + L+  L     D     +V  ++   
Sbjct: 443  VGAFEAMQSLFRANLAQVNTPLQGLELEYSFRSSPLILRLVDLTFDATTHADVGGKVNHI 502

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
            +   +          +  +   E+              + A   R+ A  I   +   + 
Sbjct: 503  AFKSAMPGQVELWPALEPSGKPEDGDWFDPVDLISDEHVAARLGRQVAARIKNMIDAGVQ 562

Query: 384  ----------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
                             L+     +   +       G+ I  +  + L   +    L SL
Sbjct: 563  IPVDGGERPVHAGDFLVLVRRRSAVFAEIIRACKAAGLPIAGADRLKLGGEMAVKDLASL 622

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            L  +    D +A+A +++ PL  +   + Y         L       ++ + +     +L
Sbjct: 623  LAFLATPEDDLALAEVLRSPLLGWTEGQLYTLAQGRTGYLWQALRQADAPETLA----IL 678

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +  Q +         R         +LL     +    +    +   +   N      
Sbjct: 679  HDLRDQADFLRPFDLIERALTRHDGRRLLLARLGPEAEDGIDELLSQALAYERN------ 732

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                                  W + +   +             +  +  + ++    ++
Sbjct: 733  ------------DVPSLTGFLSWLQTDDVEVKRQADSAGRRIRVMTVHGAKGLEAPIVIL 780

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                     +++    +                         K  A++         +  
Sbjct: 781  PDTADHAPRDRAELYRLADGSMIW------------------KTAAEDSPAPTREAREAR 822

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
               AE    ++     +A          +            W  R+         +    
Sbjct: 823  RLAAE---AESLRLLYVAMTRAQCWLMVAAAGKVSGA---SWHDRIRAGMMAAGAEAAVG 876

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
             G          +              P    +      +  K L             K+
Sbjct: 877  GGLILRGGVWPENAPRAGISAADLPALPDWAQRHAPVPPTAEKPLSPSDLG-----GAKV 931

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                          RGT  H ++  L  +           L+ +  D             
Sbjct: 932  LPGDLAGDTAAAKLRGTRLHLLLEHLPGQDPALWPALAESLLAEAED------------- 978

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913
                     ++ +         + I          +  E  G  L G  DR+ LL    V
Sbjct: 979  -----RLALLAEATTVLTAPDLAPIFAADALKEVSVTAEIDGKRLYGTIDRLILLPD-RV 1032

Query: 914  DITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946
               DYK+            + +  Q+   AAAL  
Sbjct: 1033 LAIDYKSNSVIPATSAQVPEGLLRQMRAYAAALAQ 1067


>gi|157151050|ref|YP_001450617.1| ATP-dependent DNA helicase PcrA [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075844|gb|ABV10527.1| ATP-dependent DNA helicase PcrA [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 762

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 67/627 (10%), Positives = 170/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  ++     +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRERLDDFTVTKLVEAVLEKTGYIEALATQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  +  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPAD-ESGLDKLSRFLNDLALIADTDDGDMESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRAS 587


>gi|148821833|ref|YP_001286587.1| exonuclease V gamma subunit recC [Mycobacterium tuberculosis F11]
 gi|218752277|ref|ZP_03531073.1| exonuclease V gamma subunit recC [Mycobacterium tuberculosis GM
           1503]
 gi|253797569|ref|YP_003030570.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis KZN
           1435]
 gi|254549589|ref|ZP_05140036.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289552883|ref|ZP_06442093.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis KZN
           605]
 gi|289760754|ref|ZP_06520132.1| exonuclease V (gamma chain) recC [Mycobacterium tuberculosis GM
           1503]
 gi|297633127|ref|ZP_06950907.1| exodeoxyribonuclease V, gamma subunit [Mycobacterium tuberculosis
           KZN 4207]
 gi|297730107|ref|ZP_06959225.1| exodeoxyribonuclease V, gamma subunit [Mycobacterium tuberculosis
           KZN R506]
 gi|313657434|ref|ZP_07814314.1| exodeoxyribonuclease V, gamma subunit [Mycobacterium tuberculosis
           KZN V2475]
 gi|148720360|gb|ABR04985.1| exonuclease V gamma subunit recC [Mycobacterium tuberculosis F11]
 gi|253319072|gb|ACT23675.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis KZN
           1435]
 gi|289437515|gb|EFD20008.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis KZN
           605]
 gi|289708260|gb|EFD72276.1| exonuclease V (gamma chain) recC [Mycobacterium tuberculosis GM
           1503]
 gi|328457350|gb|AEB02773.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis KZN
           4207]
          Length = 1097

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 83/860 (9%), Positives = 203/860 (23%), Gaps = 56/860 (6%)

Query: 39  LNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS-LGDVVEEKFTADLLLSY 97
             P   A   + V  +   + L      + G        + + +     +   A++  + 
Sbjct: 25  PQPDPFAQELVLVAARGVERWLSQRLSLVLGCGPGRADGVCAGIAFRNPQSLIAEITGTL 84

Query: 98  NLNPPVSNIQRLLEL----ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
           + +P          L    A L   W   L   +         +          +A+ LA
Sbjct: 85  DDDPWSPEALAWPLLAVIDASLDEPWCRTLASHLGHFATTDAEAELRRGRR-YSVARRLA 143

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            +      +         L               L      W   +  + A  P      
Sbjct: 144 GLFASYARQR------PGLLAAWLDGDLGELPGDLAWQPPLWRALVTTVGADPPHVRHDK 197

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            +    +         + + G T       +L+  +A H +  + LP         +W  
Sbjct: 198 TIARLRDGPADLPAR-LSLFGHTRLACTDVQLLDALAVHHDLHLWLPHP----SDELWRA 252

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK-REDVKRLGNVSNEMYGRSMVISKSFL 332
           +               T  + +   LL+ L    RE  + L                  L
Sbjct: 253 LAGFQGADGLLPRRQDTSRRAAQHPLLETLGRDVRELQRALPAARATDEFLGATTKPDTL 312

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKK 388
                     +       ++      V +        +   +   L   L++      + 
Sbjct: 313 LGWLQADIAGNAPRPAGRSLSDADRSVQVHACHGPARQIDVLREVLLGLLEDDPTLQPRD 372

Query: 389 SALITADRNLARRVKLE----------LTRFGINIDISAGIPLSTT-LHSSILTSLLNAI 437
             ++  D +    + +                      A   L+ T    S+   LL   
Sbjct: 373 IVVMCPDIDTYAPLIVAGFGLGEVAGDCHPAHRLRVRLADRALTQTNPLLSVAAELLTIA 432

Query: 438 FKLNDFMAIATLVKHPLAK----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                   +  L +    +    F   +            +    +        L ++V 
Sbjct: 433 ETRATASQLLNLAQAAPVRAKFGFADDDLDTITTWVRESNIRWGFDPTHRRRYGLDTVVH 492

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
           +      +        S  S+   + A+ L D     +                +     
Sbjct: 493 NTWRFGLDRILTGVAMSEDSQAWLDTALPLDDVGSNRVELAGMLAEFVERLHHVVGGLSG 552

Query: 554 TKLTVTCLQNVCLDEHR--KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            +  V  L  +           + W   + +   +       + +       +   ++  
Sbjct: 553 ARPLVAWLDALATGIDLLTACNDGWQRAQVQREFADVLARAGSRAAPLLRLPDVRALLDA 612

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            + G   +    ++ TL +   +  R +    + L GL++GV+P+ +  +      + + 
Sbjct: 613 QLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVFPRLSHPD---GDDVLAR 668

Query: 672 LNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             +        +       A G   + L+ T +  +          +    +L   D   
Sbjct: 669 EPMTGERDIRSEDRQLLLDAIGAATQTLVITYTGADERTGQPRPPAVPLAELLDALDQTT 728

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
           +   R +  +    +                P         +          P A  + R
Sbjct: 729 SAPVRERILVTHPLQPFDRKNVTPGALLGAKPFTFDPAALAAAQAAAGKRCPPTAFISGR 788

Query: 790 ILKLDFIPHFKKDP------DRTDRGTLFHNIITELIKKRINKNTPEINHLM-----KQI 838
           +           D                   +   +    +    +++ L      +++
Sbjct: 789 LPAPPAADVTLADLLDFFKDPVKGFFRALDYTLPWDVDTVEDSIPVQVDALAEWTVGERM 848

Query: 839 IDSHFEKENLPPHIDIIWRH 858
           +       +        WR 
Sbjct: 849 LRDMLRGLHPDDAAHSEWRR 868


>gi|295100618|emb|CBK98163.1| ATP-dependent DNA helicase PcrA [Faecalibacterium prausnitzii L2-6]
          Length = 887

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 78/709 (11%), Positives = 185/709 (26%), Gaps = 116/709 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           +V     T +A  EL+     + G +          GD V         +          
Sbjct: 111 NVMAITFTNKAAGELKERLRRMLGGEE---------GDEVFASTFHSACVRI-------- 153

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  E       +     D  + +     +   +S  +  +  K+  + +   + +   
Sbjct: 154 LRRWAEEIGYPRSFTIYDSDDSQRVMK--AVYKELSVDDKFFPVKSAINQMSRWKDQLIS 211

Query: 166 W-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             E L     +                   + ++L E  A          +   +EH   
Sbjct: 212 PAEALKTPARD-------TKGALAAKVYAAYEKKLKEAGAFDFDDLIYQTVILLSEHEDV 264

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     +++     +  A  RL+S +        V+   D       +   T ++ 
Sbjct: 265 REFYQNKYKYLLVDEYQDTSVAQFRLVSLLTGPEKNICVV--GDDDQSIYRFRGATIENI 322

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                                             G  +  +       S      +    
Sbjct: 323 LNFER--------------------------IYKGTRTIRLEQNYRSTSNILNAANCVIQ 356

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS--ALITADRN 397
            NT+     +         V +  A+NE++EA  IA  +   L E    +  A++     
Sbjct: 357 HNTERKGKTLWTKNGEGDKVQVYTAENEQDEASHIADVIGQHLKEGGHLADHAILYRMNA 416

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +  ++   TR GI   I  G   +       + S ++ +    D + +  ++  P    
Sbjct: 417 QSAPIESYFTRAGIPHKIVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEP---- 472

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                 K     +++ + +  +      +      Q        
Sbjct: 473 --------------------ARKIGATTIEVIADLAAQQGISMLDVISHADQYAKLSRAI 512

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                  D   +    L T   ++ +       SD  ++T                    
Sbjct: 513 APLFKFWDIYQKLQESLETKTLDEFA-------SDVIEITGYRAMLEADAAKGHEDAADR 565

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            +    L +      +     +A+   +   +  +     +    E +  + ++    ++
Sbjct: 566 LQNLGQLVNNVKSYCDQ-HGEEASLEGY---LEDIALISDIDSYNESADQVVLMTIHSAK 621

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-H 696
            L F  + L G+ EGV+P   +K               +      +    +      +  
Sbjct: 622 GLEFPYVFLIGMEEGVFPSEMSKY--------------SEADLEEERRLAYVGITRAKKE 667

Query: 697 LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
           L  + S+             SR+L+ +      +    + ++      W
Sbjct: 668 LYISNSVTRMLYGRTQRNEPSRFLREIEPEYIEETRSPVLEQRSRLGGW 716


>gi|297616808|ref|YP_003701967.1| UvrD/REP helicase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144645|gb|ADI01402.1| UvrD/REP helicase [Syntrophothermus lipocalidus DSM 12680]
          Length = 709

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/543 (11%), Positives = 143/543 (26%), Gaps = 95/543 (17%)

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARL 245
           A + +  RL  +N        +  +R   E+       +     I+I     +  A   L
Sbjct: 169 AFRLYQARLKAMNGLDFEDLILLTIRLFRENEDVLGKYRDRFKYIMIDEYQDTNYAQYVL 228

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
             T+A       ++   D       W     ++            +P+  + KL      
Sbjct: 229 SHTLAQEHRNLFIV--GDPDQSIYSWRGAEPENIKRF-----LRDYPEARIIKLEKNYRS 281

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
            +  +     V      R   + K+  P                         +    A 
Sbjct: 282 TKVILDAANAVIRHNCEREEKVLKTDNPVG---------------------EKLRRFRAV 320

Query: 366 NEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
           + +EEA  +A  +   + +    +  A+       +R ++  L R  +   I        
Sbjct: 321 DGQEEAQFVAETIAELVRQGYRYRDMAIFYRTHAQSRYLEDVLKRRLVPYYIVGARSFYQ 380

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                 + + L       D ++   ++  P                       R      
Sbjct: 381 RKEVRDVLAYLKLAVNPFDTLSFRRVINLP-----------------------RRGVGDV 417

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
            +  ++                P                +   + + +            
Sbjct: 418 TLKRIEEFAAASALPVLEALANP-----------ADIPGISRRVAEALEEFYGLIKFVQV 466

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
              N  +    +  +     V     R    L  EE  + L  L S  +E       N  
Sbjct: 467 LGENEPVMAVLEQLLESSGYVEDICRR--DPLGAEERIENLRELKSVALEFDRTRGGNLG 524

Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
           E++  ++ + D +T     + S  + ++    ++ L F  + + G+ EG++P   A+   
Sbjct: 525 EFLAEVSLVQDTDT----TDVSDAVAMMTFHSAKGLEFPVVFMTGMEEGIFPSAKAETEA 580

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI-----YTRSLRENNIPTIASRWLQR 718
                +                  +      +  +     ++R L    +  + SR+L  
Sbjct: 581 EIEEER---------------RLCYVGITRAKERLFLSNAFSRVLWGYEMRNLPSRFLGE 625

Query: 719 LLV 721
           +  
Sbjct: 626 IPR 628


>gi|307824211|ref|ZP_07654437.1| UvrD/REP helicase [Methylobacter tundripaludum SV96]
 gi|307734591|gb|EFO05442.1| UvrD/REP helicase [Methylobacter tundripaludum SV96]
          Length = 725

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 71/697 (10%), Positives = 170/697 (24%), Gaps = 120/697 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEIT--GKKSTILPIIKSLGDVVEEKFTADL--LLSYNLNP 101
           S+     T +A +E+R    E+     +S     I +   V                   
Sbjct: 56  SILAVTFTNKAAKEMRGRIEELLNMSAQSMW---IGTFHGVAHRLLRRHAKQAKLPETFQ 112

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            + +  +L  + RL+                + P        NA       A  +     
Sbjct: 113 VMDSGDQLRLIKRLLATLN--------LDADKWPPRQVQWYINAQKDEGIRARHMME--- 161

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                             +         I  K + +              +       ++
Sbjct: 162 --------------TGDPYQRQML----IIYKAYEQLCDRSGLVDFAELLLRAHELLRDN 203

Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                  +     + +     +       +  +    +   V+   D       W     
Sbjct: 204 PDVLDFYQQRFRQVHVDEFQDTNTIQYAWLRLLTEGKDNIFVV--GDDDQSIYGWRGAKI 261

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +     +P + + KL                                   + 
Sbjct: 262 ENIYSFQKH-----YPNHQVIKL---------------------EQNYRSTGNILKAANK 295

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITA 394
               N   +  ++         ++L  A NE++EA  +   +R  ++E    K  A++  
Sbjct: 296 VISVNDGRMGKELWTDAGDGDLISLYAAFNEQDEAHFVVERIRAWVNEGGLRKDVAILYR 355

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R+ +  L   G    +  G+     +      + L  +   +D  +   ++  P 
Sbjct: 356 SNAQSRQFEERLMTTGTPYRVYGGLRFFERVEIKNALAYLRLMSNRDDDASFERVINTPT 415

Query: 455 AKFGFPEKYLSRA-KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
              G       R       L          +   L +   + +                 
Sbjct: 416 RGIGAKTIDDIRNIARDQSLSLWAAAIVLINQRTLSARATNALIGF-LELIKRFDGQAEG 474

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            E  E   L+V+      + L+       +  G     +  +     +    L +   + 
Sbjct: 475 LELFEKVKLVVEK-----SGLIELYQKDKADKGE----EKVENLEELVNAARLFDASTIG 525

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
           +L  +E    L    +        +                        +    + ++  
Sbjct: 526 DLEDQENLGELDMFLANATLESGEL---------------------QGDDFDDCVQLMTL 564

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + L G+ EG++P   + +         D+     E+ +        M   
Sbjct: 565 HSAKGLEFKQVFLVGMEEGLFPSQQSVD---------DVGRLEEERRLCYVGITRAM--- 612

Query: 694 TRHLIYTRSLRE----NNIPTIASRWLQRLLVLGGTD 726
            + L  T +              SR+L+ +      +
Sbjct: 613 -KQLYLTYAESRRLYGRETYPRPSRFLREIPSEHIQE 648


>gi|113970113|ref|YP_733906.1| exodeoxyribonuclease V subunit gamma [Shewanella sp. MR-4]
 gi|113884797|gb|ABI38849.1| exodeoxyribonuclease V, gamma subunit [Shewanella sp. MR-4]
          Length = 1236

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 93/843 (11%), Positives = 209/843 (24%), Gaps = 94/843 (11%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   L    R       LL +  I V +      LR E  +  G  + +      L   
Sbjct: 12  VLCAHLAAYLRQPLPGAGLLQNEHILVQSPGMSTWLRLEIAKQNGIAAALE---FPLPSS 68

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +   DLL +       +      +L +L+    ++        Y    L    S A 
Sbjct: 69  FIWQLCHDLLPNVPKENAFTKAAMTWKLMQLLPRLLDEPSFGPLRHYLGHTLDNLESSAA 128

Query: 145 -----------------AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLA 184
                               L   +ADI D        W                     
Sbjct: 129 DTHSNHQHGAVSADDIKLYQLCGRIADIFDQYLVYRPDWIAAWEANEPLESLKLNEEQSW 188

Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPAT 242
              L  A   +    +  +          L+ A  +           + + G +   P T
Sbjct: 189 QPILWRALIAYNRDELRQSHYHRANLHQDLIAALGDSTNSLAKLPQRLFVFGISSMAPQT 248

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTA----------IWNTITEKSTNITSSNTTYSTHP 292
             ++  +A+  +  I+      H                    ++       +     +P
Sbjct: 249 IDVLHQLASRIDVIILSLSPCQHYWGDIIDPRHRARMALQYAGKRQLAEQWEDKLEVGNP 308

Query: 293 QYSL-----AKLLDFLDIKREDVKRLGNVS------NEMYGRSMVISKSFLPPDTSDMRN 341
             +       +LLD L     +    G+        +     +     + +  D  +M+ 
Sbjct: 309 LLANNGKMGRELLDMLLELPPEHCDFGDDVYCEPCGDPNDPHARASMLAGVQYDILEMQT 368

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--------------DENKK 387
            D +      + +  ++  ++ AD++  +  S    LR                     K
Sbjct: 369 LDRVLGPDAELYQEVANRRVLTADDDSIQIKSCHSPLREVETLHDHLLDLLDSDNQLTPK 428

Query: 388 KSALITADRNLARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              ++  D          +             I+       +   +   +LLN       
Sbjct: 429 DIVVMMPDVAAYAPYIDAVFAAKQGLEYIPYAIADRGAAQESPLINSFLNLLNINQSRFG 488

Query: 443 FMAIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGNK--------------NSYDIM 486
              I ++++ P  L +F   E  L   +  L+   +R  +               +    
Sbjct: 489 LTDILSILEVPAILRRFQLEEDELPLIRRWLDEAGVRWGRDEQSRLKQGVPAFEQNSWAF 548

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            +K L+L          +              +       + + +  +            
Sbjct: 549 GIKRLILGYALRDDAPLYQSSPPGMHYLTVAGVEGQSAQALGKLLNFIEVLDETTQVLAK 608

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG------KTLSSLFSKIIETGSCIKA 600
             + S         L      +  +   L    +       + L++  + I    + +  
Sbjct: 609 AQAPSLRLLELTELLNAFYAPDEDEREQLQEIRDAIAALEQELLAASPADIGPQANDLDL 668

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +         + +    V  +     ++     +  R + F  + L G+N+GV+P+    
Sbjct: 669 SIEVLALWFNQRLTESRVGQRYLAG-SVNFCTLMPMRSIPFKVVCLLGMNDGVYPRVQHP 727

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA------SR 714
             F             + +   +      + +    L  +   R     +        S 
Sbjct: 728 VGFDLMAHFGARKGDRSRRLDDRYLFLEALLSAREQLYISYIGRSERDNSERIPSMLVSE 787

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            ++   +    +                  L+        +   P     A P+  +   
Sbjct: 788 LIEYCQLCYLPESLAAEASTVNNEDAQQALLEAIVSHQPLQPFDPKLYQAALPQAPASHG 847

Query: 775 IKQ 777
           IKQ
Sbjct: 848 IKQ 850


>gi|146284346|ref|YP_001174499.1| exodeoxyribonuclease V gamma chain [Pseudomonas stutzeri A1501]
 gi|145572551|gb|ABP81657.1| exodeoxyribonuclease V gamma chain [Pseudomonas stutzeri A1501]
          Length = 1092

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 96/954 (10%), Positives = 210/954 (22%), Gaps = 99/954 (10%)

Query: 12  APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
           AP      E+   LL   L + F              + VP++   + L  E     G  
Sbjct: 7   APDLETLGELATTLLAQPLADPFAPAR----------VVVPSQGMGRWLTLELARRQGIA 56

Query: 72  STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
             +      L        +  +L S       S       L   +       P  ++   
Sbjct: 57  MQLE---LQLPAAFVWDLSRTVLGSLPEQSAFSPTTLTWRLYGWL-----CEPANLELAP 108

Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
             +           + LA  +AD+ D        W                     L   
Sbjct: 109 RLAQYLDGGDERRRLSLAAKIADVFDQYLLYRDDWLAAWERGETLDLGPDEAWQALL--- 165

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              W E   + +          L R   +  +      +++ G +   P   R++  +A 
Sbjct: 166 ---WRELTKDGHPHRARLLGDLLQRLYRDEPLPDLPERLLVFGISSLPPHHLRVLDGLAR 222

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           H +  +             W  I +         +            LL  L  +  D  
Sbjct: 223 HIDVVVCALNP----SREAWGEIRDIRELARQPESGVDDWYLDVGHPLLASLGKQGRDFF 278

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP----------NIQKCFSDVAL 361
                     G       S       D     +  + +           ++ +    + +
Sbjct: 279 DSLFSLTASEGSQEFGLYSEDEDLHDDSLLHALQNDILRLRTRLPDERISLAENDRSLEV 338

Query: 362 IEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLELTRFGI-----N 412
             A +   E   +   L      +      +  ++T D          +           
Sbjct: 339 HIAHSPLREVEILHDQLLARFAADPALTPDQVVVLTPDIERYAPFIEAVFAPREGSPRIP 398

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAK 468
             ++     +          LL           I   ++ P     A     +  L R  
Sbjct: 399 YSLADRSLRAEVPLIEAFLELLLLAQSRFAAEEILAWLEQPAIARRAGIESEDLPLLRDW 458

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL----LV 524
                V    +      + L +          +   +          D+   +     L 
Sbjct: 459 LREAGVRWGRDGEQRARLGLPAEPAFTWRQGLDRLLLGFAAPPQLAGDRAPLLGEHWPLD 518

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
                    L                    +       ++ +            E    L
Sbjct: 519 ALEGARGQLLGRLVGFVERLGSLADQLARPRPLAEWADDLQVLIDTLFDEREAGETLLLL 578

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS---STLFILGTLESRLLNF 641
           S   + + +            ++++ + +     +           +     +  R L F
Sbjct: 579 SQACAALRDQAQAADLTRPIELELVHQQLSAALQQGGGASGFLTGAVTFCTMVPMRSLPF 638

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
             + L GL++G +P+ T  + F             A +   +      + +  + L  + 
Sbjct: 639 RVVCLLGLDDGAFPRRTPPSGFDLIGRHPRRG-DRARRLDDRYLLLETLLSARQALYLSY 697

Query: 702 SLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRG------------------------ 735
             R+  +N     S  L  +L             R                         
Sbjct: 698 VGRDPRDNAVLPPSVLLSEVLEAVDMTAVLADGARPVSQKILIAHPLQPFSPRNFGEAPC 757

Query: 736 ----QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                 +    ++L    +             +    T   S++ Q    P      + L
Sbjct: 758 AGYSLPWFRAAQRLAEPPQAQAQPFASLLAEPDEAWLTIEPSQLLQCFRHPARFLLEQRL 817

Query: 792 KLDFIPHFKKDPDRTDRGTLFHNI--ITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
            L      +                 +  L  + + +   +                 L 
Sbjct: 818 GLRLADDQESLASDEPFDLEMPAWNGLRRLSLQAMEQRWSDEEERRMACAAGWLPTGELG 877

Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
             +             +F     +++          P  + I   G+ + G+ D
Sbjct: 878 QAL----WGKLRGPVRAFAPRLFELRPDAVP----EPLPVDINLAGVRVHGWLD 923


>gi|31791813|ref|NP_854306.1| exonuclease V gamma chain [Mycobacterium bovis AF2122/97]
 gi|31617400|emb|CAD93510.1| PROBABLE EXONUCLEASE V (GAMMA CHAIN) RECC (EXODEOXYRIBONUCLEASE V
           GAMMA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE)
           [Mycobacterium bovis AF2122/97]
          Length = 1097

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 84/860 (9%), Positives = 204/860 (23%), Gaps = 56/860 (6%)

Query: 39  LNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS-LGDVVEEKFTADLLLSY 97
             P   A   + V  +   + L      + G        + + +     +   A++  + 
Sbjct: 25  PQPDPFAQELVLVAARGVERWLSQRLSLVLGCGPGRADGVCAGIAFRNPQSLIAEITGTL 84

Query: 98  NLNPPVSNIQRLLEL----ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
           + +P          L    A L   W   L   +         +          +A+ LA
Sbjct: 85  DDDPWSPEALAWPLLAVIDASLDEPWCRTLASHLGHFATTDAEAELRRGRR-YSVARRLA 143

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            +      +         L               L      W   +  + A  P      
Sbjct: 144 GLFASYARQR------PGLLAAWLDGDLGELPGDLAWQPPLWRALVTTVGADPPHVRHDK 197

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            +    +         + + G T       +L+  +A H +  + LP         +W  
Sbjct: 198 TIARLRDGPADLPAR-LSLFGHTRLACTDVQLLDALAVHHDLHLWLPHP----SDELWRA 252

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK-REDVKRLGNVSNEMYGRSMVISKSFL 332
           +               T  + +   LL+ L    RE  + L                  L
Sbjct: 253 LAGFQGADGLLPRRQDTSRRAAQHPLLETLGRDVRELQRALPAARATDEFLGATTKPDTL 312

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKK 388
                     +       ++      V +        +   +   L   L++      + 
Sbjct: 313 LGWLQADIAGNAPRPAERSLSDADRSVQVHACHGPARQIDVLREVLLGLLEDDPTLQPRD 372

Query: 389 SALITADRNLARRVKLE----------LTRFGINIDISAGIPLSTT-LHSSILTSLLNAI 437
             ++  D +    + +                      A   L+ T    S+   LL   
Sbjct: 373 IVVMCPDIDTYAPLIVAGFGLGEVAGDCHPAHRLRVRLADRALTQTNPLLSVAAELLTIA 432

Query: 438 FKLNDFMAIATLVKHPLAK----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                   +  L +    +    F   +            +    +        L ++V 
Sbjct: 433 ETRATASQLLNLAQAAPVRAKFGFADDDLDTITTWVRESNIRWGFDPTHRRRYGLDTVVH 492

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
           +      +        S  S+   + A+ L D     +                +     
Sbjct: 493 NTWRFGLDRILTGVAMSEDSQAWLDTALPLDDVGSNRVELAGRLAEFVERLHHVVGGLSG 552

Query: 554 TKLTVTCLQNVCLDEHR--KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            +  V  L  +           + W   + +   +       + +       +   ++  
Sbjct: 553 ARPLVAWLDALATGIDLLTACNDGWQRAQVQREFADVLARAGSRAAPLLRLPDVRALLDA 612

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            + G   +    ++ TL +   +  R +    + L GL++GV+P+ +  +      + + 
Sbjct: 613 QLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVFPRLSHPD---GDDVLAR 668

Query: 672 LNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             +        +       A G   + L+ T +  +          +    +L   D   
Sbjct: 669 EPMTGERDIRSEDRQLLLDAIGAATQTLVITYTGADERTGQPRPPAVPLAELLDALDQTT 728

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
           +   R +  +    +                P         +          P A  + R
Sbjct: 729 SAPVRERILVTHPLQPFDRKNVTPGALLGAKPFTFDPAALAAAQAAAGKRCPPTAFISGR 788

Query: 790 ILKLDFIPHFKKDP------DRTDRGTLFHNIITELIKKRINKNTPEINHLM-----KQI 838
           +           D                   +   +    +    +++ L      +++
Sbjct: 789 LPAPPAADVTLADLLDFFKDPVKGFFRALDYTLPWDVDTVEDSIPVQVDALAEWTVGERM 848

Query: 839 IDSHFEKENLPPHIDIIWRH 858
           +       +L       WR 
Sbjct: 849 LRDMLRGLHLDDAAHSEWRR 868


>gi|15837024|ref|NP_297712.1| exodeoxyribonuclease V gamma chain [Xylella fastidiosa 9a5c]
 gi|9105262|gb|AAF83232.1|AE003893_9 exodeoxyribonuclease V gamma chain [Xylella fastidiosa 9a5c]
          Length = 1121

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 109/928 (11%), Positives = 211/928 (22%), Gaps = 111/928 (11%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
              +L G L E  R       LL    I +P     + L++      G  + +     + 
Sbjct: 17  ALDVLAGLLAETLRSPVPGQSLLVPDIILIPQAAMRRWLQATLATTHGVVANL--EFLTP 74

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
           G+ V     A+L    N       +   +   RL     +        L           
Sbjct: 75  GEFVARALDANLGAVPN------ALDTAVLHWRLYAALCDPALLTQPALAELHAYLADGD 128

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 LA+ L+   +  +     W        +      +L    +  A+         
Sbjct: 129 LFKPWTLAEALSAAFEKYQAWRCDWLLRWEAGADPDDPQAILWRHSVNGATHRARRIHDY 188

Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
           LN                EH  +G    + I  +    P   R+++T A        LP 
Sbjct: 189 LNRYGSG----------TEHPPQGLPARLFIFATLNISPDVLRVLATQAQVGTLHFYLPT 238

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI---KREDVKRLGNVSN 318
                                    T      ++               E V   G ++ 
Sbjct: 239 PTKEYWGDAQPFTQRLHQPTDCVTQTGENRLLHAWGAAGRDFMTVLGSYEVVHPSGEITA 298

Query: 319 EMYGRSMV--------ISKSFLPPDTSDMRNTDILENKIPNIQKCFSD--VALIEADNER 368
                  +        +  S L    +D+ +        P       D  +         
Sbjct: 299 YDDPEQRLGTTLDEGGLRDSLLQRMHADLFHNRSAPVPAPLPAPRLEDPSLQFHACHTRL 358

Query: 369 EEAISIAIALRMSLDE------------NKKKSALITADRNLARRVKLEL-----TRFGI 411
            E   +   LR  L+               ++ A++  D +L       +         +
Sbjct: 359 RELQVLHDRLRALLEPNSPEGQRFNPPLQPREIAVLAPDIDLYIPYLEAVFGGHAHSDPL 418

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              ++   PL     + +   LL+          I  L+   L             ++  
Sbjct: 419 PYTLADASPLIDEPLAEVFLRLLDLPLSRFGLHEILDLLAI-LPMATLAGFDTQTLESLR 477

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIAT---QKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
             +   G +   D                       +    +  ++ D        D   
Sbjct: 478 SWLTAAGARWGLDAAHRAEHQAPADDAYTWSFALDRLLLGHASGADADIAGVAAWPDLEG 537

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--------WFEEE 580
             +T L T                   L     + +       LP++           E 
Sbjct: 538 SMLTALDTLIRLLRVLANTRQRLSEALLPTQWRERLLSLLDALLPDIPTAPSGIQRPLER 597

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
            + L   F+              E + +    + G+T       +  + I   +  RLL 
Sbjct: 598 LRRLIDTFATDATRAGVALPVPAEVVRMHFAALLGDTDTRAPLLTGGISIGRMVPMRLLP 657

Query: 641 FDTLILGGLNEGVWPKNTAKNPF--LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-- 696
           F  + L G+N+G +P+         L+  + +                 F          
Sbjct: 658 FRVICLLGMNDGDFPRRDPAAGLNRLTAELGTAQRRPGDRSRRDDDCLLFLQLFSAAQDV 717

Query: 697 --LIYTRSLRENNIPTIASRWLQRL----------------------------LVLGGTD 726
             + Y  +   +      S  L  L                                G D
Sbjct: 718 FYVSYLGADPHDGSLREPSPLLTELLSTAVTYHADPSTAAKTLLLRHSLQPFSPTAFGAD 777

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                      +      ++          P+  P L           +++  + P   +
Sbjct: 778 GDPRRFSYHPLWHAAAASIEGQRHPLDPWCPRRLPALPDPEPALPLHSLRRFFSAPAEQF 837

Query: 787 ARRILKLDFIPHF-----------------KKDPDRTDRGTLFHNIITELIKKRINKNTP 829
            ++ L L                       +   D     +L H     L  +   +   
Sbjct: 838 LQQRLGLRLPEPPQTTDECDPLWLPSHGLERHRLDTLIFASLLHEADDTLYPQLRARALL 897

Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWR 857
               L +Q +    E           WR
Sbjct: 898 PSGPLGRQQLHERIEHLRPYAQAFAHWR 925


>gi|296453651|ref|YP_003660794.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183082|gb|ADG99963.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
          Length = 1340

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/496 (11%), Positives = 134/496 (27%), Gaps = 28/496 (5%)

Query: 183 LAADFLKIASKYWTERLVELNAS---SPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTG 237
              D L    + + +   E N +           L+          +     +++     
Sbjct: 252 RKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGERTRRRYSHVLLDEYQD 311

Query: 238 SIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP--- 292
           +    A L++ +   +    + V    D       W   +  +  +   +          
Sbjct: 312 TSTTQAALLAALFHVDASQRSAVNAVGDPFQSIYAWRGASPGAFRMFQQDFHLPAGYKPF 371

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
             S+ +    + ++  +   L   SN     S ++ +  +          +     +   
Sbjct: 372 PLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDAPEGTLGVLGFA 431

Query: 353 QKCFSDVALIE-ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                  A++           S A        E K   A++   ++     +  L + G+
Sbjct: 432 TAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKVPVAVLFRSKSHMPEYQAALEQAGL 491

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              +     L        L +LL+      D  ++  L+  P       +  +       
Sbjct: 492 TTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAADLTMLARFAEE 551

Query: 472 ELVALR------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
           + +  R            D    +   + R    +    V      L  +  +L   L  
Sbjct: 552 QNMEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPDVLLRGDLVKLLERLSA 611

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN---------VCLDEHRKLPNLW 576
           H    IT         +   G   + D  +  +  L           +   +HR  P L 
Sbjct: 612 HGRNAITRAAVMLRQVHDAVG-RPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALA 670

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLE 635
                  +  + +   E  +    +   +I  +  L   E     +  +   + ++   +
Sbjct: 671 HMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQ 730

Query: 636 SRLLNFDTLILGGLNE 651
           S+ L +D + + GL  
Sbjct: 731 SKGLEWDAVAVVGLTA 746



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 79/838 (9%), Positives = 200/838 (23%), Gaps = 81/838 (9%)

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            +   L +   ++ V    AL+              ++      +       +  +   P 
Sbjct: 482  YQAALEQAGLTTFVVGYSALLER-------PEIRDLMALLHVAADHTDTGSLMRLLATPR 534

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
              +    L      A    + ++   +  +       P    A ++     +  +   L 
Sbjct: 535  FTMSAADLTMLARFAEEQNMEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLP 594

Query: 315  NVSNE-----------MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
            +V               +GR+ +   + +     D     + +     I+    D+  + 
Sbjct: 595  DVLLRGDLVKLLERLSAHGRNAITRAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVL 654

Query: 364  A---DNEREEAI-SIAIALRMSLDENKKKSALITADRNLARRVKLELTRF--GINIDISA 417
            A    N +  A  ++A     ++ +                        +   +      
Sbjct: 655  AGVLHNPQHRANPALAHMPMDAIVDLVDTYT--QEIAAEQTPSLHGFITWVDHLASVEDE 712

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
               L        L ++  +     D +A+  L              +   ++        
Sbjct: 713  AASLPDAPVDVELMTVHQSKGLEWDAVAVVGLTAGGFPSNQGDHLKIVLDEHHTGGTEQG 772

Query: 478  GNKNSYDIMDLKSLVLDRIA-----TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
                        S + +  A                     E D   ++  +D +     
Sbjct: 773  HWTAPEYHETADSWLTNPTAVPVPMRADAGILPRFPHDADVEADPIASLAALDDVELIDD 832

Query: 533  PLVTYKTNKNSTCGNLSISDW-TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             +             +  S W         + +  DE R +           L +  +  
Sbjct: 833  EVFGSMREFGDGVEEVDASGWYLTQAEEYGRRLHADERRLMYVALTRAREDALMTYCAYT 892

Query: 592  IETGSCIKANAI---------EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF- 641
             E+G                  W+++   L   E      +    L      +  L++  
Sbjct: 893  GESGRDPSVVPKGSRAAQPSNFWLEVHDALQAREHAISAQDCVERLQAANAGKPMLISAQ 952

Query: 642  ------DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
                        G +   +        + + + Q++   +         A   +++ G  
Sbjct: 953  GEAIAPPEGFFIGEHAAAYSDAVVGEAWQTPITQTNAAAELPWPATLSDAVHEQLSRGID 1012

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL----DWTRKLDYTTKQ 751
              +             A   LQR  +L            GQ          +++    +Q
Sbjct: 1013 --VIAADSSSLEQHQDAGPLLQRAQLLVDDADLMADAASGQSLDEAVKAKAQRVLAAGRQ 1070

Query: 752  PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                       +  +     +  I + I    +  A    +         +  + D   L
Sbjct: 1071 NVTSLQARVGGMNEREERLYWRSIIRPIPRISSPAAEAGTQFHAWAEQFINAGKPDEAVL 1130

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH---------- 861
             +     +     +        ++  + +   +          + +              
Sbjct: 1131 AYEAEPSMPHTGQDAGFVSREAMLADLAERERQCRKPSTRQPAVPQPTAQQSVSAVSATS 1190

Query: 862  ---------KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK--- 909
                     K+        E   +     +      + +  +G+ + G  D + +     
Sbjct: 1191 ISSDNATESKLVAWQRRLAESSWAKRIPAWTERAIVVDVPGVGL-VNGKLDAVFIGGLDP 1249

Query: 910  ---SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
               +    + D+KTG  P K         QL +    L A    ++D    A L+Y+ 
Sbjct: 1250 SSTTVRFTVVDWKTGRRPTKPDDITRKLAQLDMYRLLLAAVEGVELDSID-ATLYYVS 1306


>gi|227503632|ref|ZP_03933681.1| RecB family exonuclease [Corynebacterium accolens ATCC 49725]
 gi|306836102|ref|ZP_07469089.1| exodeoxyribonuclease V beta subunit [Corynebacterium accolens ATCC
           49726]
 gi|227075668|gb|EEI13631.1| RecB family exonuclease [Corynebacterium accolens ATCC 49725]
 gi|304568020|gb|EFM43598.1| exodeoxyribonuclease V beta subunit [Corynebacterium accolens ATCC
           49726]
          Length = 273

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 73/237 (30%), Gaps = 20/237 (8%)

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
            +P   S S        P     R I K+              +GTL H ++ E  K   
Sbjct: 7   PRPLALSPSRASDYQQCPLLYRFRAIDKIPEPKTI-----AQVKGTLVHAVLEETHKLPR 61

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIW------RHLFHKISHSFLEHEEKIQSSI 878
            + T      M +   +   +++      +             ++   + + E       
Sbjct: 62  EERTYPAAVKMIKPSWAAMTEKDAELLELVPEEETYDFFVAARELLKGYFQMEN--PQGF 119

Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
           +     +     +   G+ + GF DR+D   +G V + DYKTG  P    +      Q+ 
Sbjct: 120 DCQETEMYVNTVLP-NGVPVRGFIDRVDRAPTGEVRVVDYKTGKKPAPRFSHSA-QFQMR 177

Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK--KYSADELSEKSLKN 993
             A              ++  L Y+++     +     + +  +    +L  K   +
Sbjct: 178 FYALVYWR--LLGTIPHQL-RLMYLKVLDSMFLAPTQEELEYFERDLGQLWAKIEAD 231


>gi|308804119|ref|XP_003079372.1| ATP-dependent DNA helicase (ISS) [Ostreococcus tauri]
 gi|116057827|emb|CAL54030.1| ATP-dependent DNA helicase (ISS) [Ostreococcus tauri]
          Length = 859

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 74/678 (10%), Positives = 172/678 (25%), Gaps = 83/678 (12%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +ELR    +  G+ +       +   V                  +  
Sbjct: 119 EILCITFTNKAAKELRERLRDKIGEVAAKEITAGTFHSVAARMLRRHGER-------IPG 171

Query: 106 IQRL--LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           I R     +       +     ++         + P    N I  AK+         +  
Sbjct: 172 IGRTGEFTIYDADDSKQIVQSVLVNKFGESKKTAQPGPMRNWISTAKSCVK-----HSVG 226

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA---- 219
            +   +     +       ++          + + L + NA        A +        
Sbjct: 227 LRGSQMLRALEDAKKPIPPMSQQRFVELYDEYEDGLRQANAFDFDDLLSATVAMLEMCPD 286

Query: 220 -EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +      L+  ++  P G++ +   D       W      +
Sbjct: 287 VRAYYERRWSQVLVDEFQDTSTTQYELIRKLSQ-PQGSVFV-VGDADQAIYGWRGAEVAN 344

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                                   L         +   +  +   S   S   L   T  
Sbjct: 345 IRTQFDQDFKEVQT--------HMLTTNYRSTSTIVEAAQAVIKESSFPSPLDLVAHTPG 396

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD 395
            R                 DVA++EA+++REEA  IA+  R  +   D      A++   
Sbjct: 397 GR-----------------DVAIVEANDDREEAEFIALEARKLVQDSDLRYSDVAVLYRT 439

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            + AR ++    R G+   +       +      + + L  +   +D +++  ++  P  
Sbjct: 440 NSQARVLEEAFIRAGVPHTVVGDTSFYSRKEIKDMIAYLRIVSNSSDTVSLNRIINTP-- 497

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                        N+         K       L   + D +      T+       L   
Sbjct: 498 --------TRGIGNSTIEKLNAWLKTLPKKDGLSPSIGDALLRGAWKTNPGEQSELLPSA 549

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
           D+     L       +   V        T  N +  +  +  +       +         
Sbjct: 550 DEMG---LTARARTAVLNFVELMRACQQTAMNATPGELLEDVIKRTGYETMVLDADDGVD 606

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK-----SSTLFI 630
            +           +K               ++ +   ++G ++    E           +
Sbjct: 607 RW--AFVQELINLAKEPPRDVDETIQDRVGLEALGAFLEGVSLLTSAETDDVTGGDKAKL 664

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    S+ L FDT+ + G+ +G+ P     +              + +    +    +  
Sbjct: 665 MTMHASKGLEFDTVFIAGVEDGLIPFIRNGD--------------SDDDQDEEVRLFYVG 710

Query: 691 ANGTRHLIYTRSLRENNI 708
               +  +     RE   
Sbjct: 711 ITRAKRKLMLCHARERRR 728


>gi|109392528|ref|YP_655657.1| gp78 [Mycobacterium phage Che12]
 gi|91980678|gb|ABE67397.1| gp78 [Mycobacterium phage Che12]
          Length = 297

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 86/301 (28%), Gaps = 72/301 (23%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S S++ Q    P A    RI K+   P          +GT FH +     K         
Sbjct: 12   SVSQLNQYTRCPMAYKLARIDKVWARPAAWLP-----QGTAFHTVAEVYEKALAEGR-EM 65

Query: 831  INHLMKQIIDSHFEKEN-------------LPPHIDIIWRHLFHKI------SHSFLEHE 871
                 ++I    + K+                       R +  +          F+   
Sbjct: 66   SLERAQEIFKEEYSKDIGALCEETPNFEWWFWSGPYNGERDIERRYEVGLEQVAKFIAWR 125

Query: 872  EKIQSSI-------------------EKIFVN----------IPAKMAIESIGIHLTGFA 902
            +     I                   ++  V           I    +IE  GI + GF 
Sbjct: 126  QDKGQQIWMTPEVRDRRCITGDDEAVQEHHVEDCDCQPSKPAIELSFSIELDGIKVRGFI 185

Query: 903  DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
            D + ++  G + + DYKTG+ P         D QL + A A+       ID  K  +  Y
Sbjct: 186  DAVVVV-DGELRVRDYKTGNKP-------GDDFQLGVYALAI--SMLFGIDPPKTGD--Y 233

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022
                +K K   I          +L+E + + +      ++ G Q                
Sbjct: 234  YMAGKKGKKAVI------TDPYDLTEWTREKITARFHEVEAGIQAGDFEPLPEPDKCGFC 287

Query: 1023 E 1023
            +
Sbjct: 288  D 288


>gi|323467081|gb|ADX70768.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus H10]
          Length = 753

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 82/691 (11%), Positives = 184/691 (26%), Gaps = 120/691 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLL-LSYNLNPP 102
           ++     T +A  E+R    ++ G  +       + +   +       D   + Y+ N  
Sbjct: 61  NILAITFTNKAANEMREREQKLLGPAAQNIW---MSTFHALCVRILRRDADKIGYSHNFS 117

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +++    L L + I            DL     +  P    +AI   KN  D++D     
Sbjct: 118 IADSAEQLTLVKHIEK----------DLNINPKMYDPRGILSAISNGKN--DLLD----- 160

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RA 217
               +   A  +  +               + +  RL            +  +       
Sbjct: 161 ---PKAFAASASSPFD-------KMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKDP 210

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           E  H  +     I++     +  A   L   +A       V+   D       W     +
Sbjct: 211 ETFHYYQNKFRYILVDEYQDTNQAQYELCHALAAQYKNICVV--GDADQSIYGWRGANME 268

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +     S                        D K+ G  + ++              ++ 
Sbjct: 269 NIMNFES------------------------DYKKDGVKTVKLEQNYRSTGHILSAANSV 304

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALITA 394
              N +     +   Q   + V   +A +  +EA  I   ++  ++      K  A++  
Sbjct: 305 IKNNQNRKAKNLWTDQGEGAKVTYYQAQSGDDEAHYIISKIKEEVEAKKRTYKDFAILYR 364

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R V+    +  I   I  G           + + L  +    D M++  ++  P 
Sbjct: 365 TNAQSRTVEEAFVKSNIPYQIVGGHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINVPK 424

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G        A                                 ++       +R ++
Sbjct: 425 RGIGATTVDKLLAFADENHYN--------------------ALDAMDHVGESPINTRTAK 464

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           +  +    L D I    T  VT  T K  +    + +   + T+     +          
Sbjct: 465 KLSDFGTKLRDAIAYAQTHGVTGLTEKILSDFEYTDALRAENTIEAETRL---------- 514

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
               E      S+  +  +     +  +    D +  +          E  + + ++   
Sbjct: 515 ----ENLDEFLSVTKRFDDHYEPDEDESNPLSDFLAEVSLLSDQDDLDEDDNQVALMTLH 570

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ +G++P   A              +    +   +    +      
Sbjct: 571 AAKGLEFPVVFLVGMEDGLFPLQRA--------------MMDDNELEEERRLAYVGITRA 616

Query: 695 -RHLIYTRSLRE----NNIPTIASRWLQRLL 720
            + L  T +              SR+L  + 
Sbjct: 617 KKELYLTNAYSRMMYGRMQNNPPSRFLDEID 647


>gi|37680799|ref|NP_935408.1| exonuclease V subunit gamma [Vibrio vulnificus YJ016]
 gi|37199548|dbj|BAC95379.1| exonuclease V gamma subunit [Vibrio vulnificus YJ016]
          Length = 1162

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 88/742 (11%), Positives = 198/742 (26%), Gaps = 85/742 (11%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+ E  +  G  + I      L           +L         +   
Sbjct: 34  QILVQSPGMSQWLKMELAKEFGVAANIE---FPLPATFIWDMFTHVLADVPKRSAFNKEA 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK--- 164
              +L  L+         + +       L      A    L++ +ADI D          
Sbjct: 91  MTWKLMHLLPQ----QLALAEFSPLARYLQDDEEGAKLYQLSEKIADIFDGYLVYRPEWI 146

Query: 165 -KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN-ASSPVGYQIALMRAEAEHL 222
             WE   A+        W       +    +           ++   + I  +       
Sbjct: 147 RDWEAGKAVAEIGDEHPWQPML--WQALYDHTVALGQSPYHRANLYEHFIDSLENYTGQF 204

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN---------- 272
            +  +  + + G T   P     +  +  H +  ++      +    + +          
Sbjct: 205 ERLPQ-RLFVFGITSLPPRYMDALKALGQHIDVHLMFTNPCRYYWGEVRDRKFLARLAAK 263

Query: 273 ---------------TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
                            +E+       N     H +     LL  +     D   L +  
Sbjct: 264 QRQHLVWQQDHSQLQGQSEQLKGSIEDNLADELHTEVVGNSLLASMGKLGRDNMYLLSQL 323

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKI----------PNIQKCFSDVALIEADNE 367
                 + V  +             ++ E++           P I+     ++L    + 
Sbjct: 324 ESHEIEAFVDIEPDSLLHQLQADILNLEEHQDDDHIESSHHKPLIEANDRSLSLHVCHSP 383

Query: 368 REEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDISAG 418
             E   +   L    D +     +   ++ AD N        +         I   IS  
Sbjct: 384 MREVEVLHDQLLAMFDADPTLKPRDIIVMVADINAYSPAIQAVFGNAPGERFIPYSISDR 443

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELVAL 476
                +   +   +L+N          +  L++ P  L KF   E    +AK  +E   +
Sbjct: 444 TADQESPILNAFLTLVNLPQMRCLASELLELLETPAILQKFSLSETEFLQAKQWVEASGI 503

Query: 477 RGNKNSYDIMDL---------------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
           R   +     +                + L+   +                  E + +  
Sbjct: 504 RWGLDEQTGCEFELPQTRQNTWQFGIQRMLLGYAMPESAGLFQSGDEWLAPYNEVQGMGA 563

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            L   +   I      +  +++     +I  W +     L +    +      L  +   
Sbjct: 564 ELAGKLSYFIE---KVRCYRHALAQAQNIDAWRQQLHGVLADFFAVDLEGEVAL--KSIR 618

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            TL  L  ++ +     + +       +   + G  V  +      +     +  R + F
Sbjct: 619 DTLGQLKEQLSDAAFEAELSPSVIRQYLLNKLSGSRVSQRFLAG-QVNFCTLMPMRSIPF 677

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
            T+ L G+N+GV+P++ A   F     ++    ++             + +  + +  + 
Sbjct: 678 RTVCLLGMNDGVYPRSVAPEGFDLIHGRARAGDRSRRDDDRYL-FLEALLSAQQSVYISY 736

Query: 702 SLRE--NNIPTIASRWLQRLLV 721
             R   +N   + S  +  L+ 
Sbjct: 737 VGRSVQDNTEKVPSVLVAELME 758


>gi|332361566|gb|EGJ39370.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1056]
          Length = 762

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 67/627 (10%), Positives = 170/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 156 YANLAGDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  ++     +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRERLDDFTVTELVEAVLEKTGYAAALAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  +  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPTD-ESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLIGMEENVFPLSRAS 587


>gi|227494918|ref|ZP_03925234.1| DNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831370|gb|EEH63753.1| DNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 1119

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 78/650 (12%), Positives = 163/650 (25%), Gaps = 92/650 (14%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITG--KKSTILPII-------KSLGDVVEEKFTADLLLS 96
            V     T++A  E      +  G    S +L  +        S+     + F  +L+  
Sbjct: 29  RVLGLTFTRKAAAEFAHRLRKRIGFLASSGLLAEVENDPWFAASVNVSTYDSFAGNLVKE 88

Query: 97  YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156
           +     V    RL+  A    I  + +      L  ++P  +      A+ LA       
Sbjct: 89  HGALVGVDPNARLITAAASWQILDDLISTYQGKLPEKAPAEIRK---AALHLA------- 138

Query: 157 DIIETEEKKWEDL-HALKNEK--------------YGMWWLLAA------DFLKIASKYW 195
           + + +       L   L   +                 +             L    K +
Sbjct: 139 NEMTSHGVTITALEAELARWEEGIKTTPLTGRKKKLPRYSQSLLDKISERRLLLPLIKKF 198

Query: 196 TERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
            +     N           +            ++     +++     +      L+ST+ 
Sbjct: 199 NDYKRAHNLLDFTDQMAVALEIVRNFPTVVAEIRSEYDAVLLDEFQDTSVGQMELLSTLF 258

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                  V    D +     W   +  S ++                             
Sbjct: 259 K---DMSVTAVGDPNQAIYGWRGASAASLDLFPIMFAQQ----------------METKT 299

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNERE 369
             L            + +    P         D+++    N +      +++       E
Sbjct: 300 FSLSKAWRNKENILDLANLISAPLAQKTYPGVDVIKLVASNSEDADKGKISVFYPATNVE 359

Query: 370 EAISIAIALRMSLDENKKK--------SALITADRNLARRVKLELTRFGINIDISAGIPL 421
           E   +A  ++                  A++   R     +   L   G+   +     L
Sbjct: 360 EYRYVAEQVKKWKQTYIDPHSGVNDETYAILVRSRRHFLPMIEALEAQGLEAAVVGLGGL 419

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            T    + L ++L A     D  A+  L+ +        +      K           K 
Sbjct: 420 VTQPVIADLRAILAASIDPLDGPAVMRLLTN-------LDLSARDIKVLYSWATQLSKKR 472

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
           +   +  +  +LD +             +  S    +   LL D +      L       
Sbjct: 473 NSLEVGRQEFLLDAVDNPPEVGWSADGGAGFSARGHQQVQLLRDRLAAVRAVLD------ 526

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                   +S      +         +     NL        L        +T     AN
Sbjct: 527 ------FDVSYIVSKAIRVFDLDVEVDADPYLNLAGTAVDAFLEIANDYASQTEYANLAN 580

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            ++W++       G         SS + I+   +++ L +D + + GLNE
Sbjct: 581 FLDWLETTVEAEQGLKAPTAQVDSSVIQIMTVHQAKGLEWDRVAVIGLNE 630



 Score = 79.2 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 77/280 (27%), Gaps = 33/280 (11%)

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT--KQPHYKRPKPFPPLEAQPRTY 770
            SR L ++     T   +  +           +L YT       YK+      +E      
Sbjct: 830  SRVLSQIAQRLNTSGMEITELDFDPADKQQAELIYTAQRALDAYKKRLADKTIEVSVERL 889

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S + +  L+       A+R+ +           D    GT+FH       +K    +   
Sbjct: 890  SATSVTSLLLHQKEF-AQRLRRPVPAEPS----DAALLGTIFHAWAQTWCQKAGQASAEA 944

Query: 831  INHLMKQIIDSHFEKENLPPHI----DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                 +   +S     +  P        +      + +      E         + + +P
Sbjct: 945  EPLQAETAENSAETTVSFDPDTLTQKQKLQLGKLQERAKEIFTDELS-----TVVGLEVP 999

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK---------LIDPQL 937
              +      + + G  D +     G   + D+KTG  P  +   +             QL
Sbjct: 1000 FSLK--HEQLTIRGQID-VLAKADGKWRVIDWKTGRPPVLDEKHRENNLSSHLSGYLGQL 1056

Query: 938  SLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
            +L   A  +    ++ +      +  I L           
Sbjct: 1057 ALYRKAIAQQQGVAENE----VEVELIFLGGDDSYSPQQR 1092


>gi|294102168|ref|YP_003554026.1| UvrD/REP helicase [Aminobacterium colombiense DSM 12261]
 gi|293617148|gb|ADE57302.1| UvrD/REP helicase [Aminobacterium colombiense DSM 12261]
          Length = 660

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 71/704 (10%), Positives = 170/704 (24%), Gaps = 130/704 (18%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
           +     T +A +E+      + G K++ +  + +           +              
Sbjct: 58  ILAVTFTNKAAREMGERVQALVGAKASAM-QVSTFHSFGLHFLFRNSD------------ 104

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE--- 163
              LE   L   +     +  + L  +    L + P        N+ D I   +TE    
Sbjct: 105 --QLEFLGLRKGFAIFDRNDSRSLVKKIMEDLKLDPKQIDP--TNVLDHISKAKTEGNHK 160

Query: 164 -KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP-----VGYQIALMRA 217
             +   L  +++E                 + + + L   NA        +   + ++  
Sbjct: 161 TLEPVGLEGIEHE---------------VYRKYHDELRRQNAVDFDDLLILPLHLLMVDE 205

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           +     +     I++            L+  +       +V+   D       W      
Sbjct: 206 KLREQEQSRLDWILVDEYQDVNKPQYFLLRRLIGTKGNIMVV--GDPDQSIYGWRGADMT 263

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                  +                                  +              +  
Sbjct: 264 MILNFEKDFPA--------------------------AKVVVLDQNYRSTGNILKAANAV 297

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
            + N    +  +   +     + ++ A NE +EA  I   +    +         A++  
Sbjct: 298 IISNERRRKKNLWTARDMGEKIYVLLAPNEYQEADFILSEMHRLHNFCGYRYGDMAVLYR 357

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
              ++R  + +    G+   +  G           + S +       D  ++  +   P 
Sbjct: 358 INAMSRIYEQKCIEKGVPYRVVRGTAFYDRKEIKDVLSFMRLAVNPLDGASLGRIANVP- 416

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                            +   + G        ++++  L R      +  +       + 
Sbjct: 417 ---------TRGIGKKSQEKLMEGLGAIP---EMEAEQLWRAVADGKDLGLTGKAKIGAM 464

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           E       ++         L+    +                          D       
Sbjct: 465 ELGRHMFNIIKRSGSFHDVLLYILDSIEYEDQLKK----------------DDPEGWEER 508

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +    E  +L +    + E  + +      + D+ T  +D             +  L   
Sbjct: 509 VENIRELGSLVTSGGDLAEVLAEVAL----FTDLETTDMDDLE---------AVNFLTLH 555

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L GL E ++P                  L+  E    +    +      
Sbjct: 556 AAKGLEFPVVFLVGLEEAIFPHFK--------------CLEVQESLEEERRLCYVGMTRA 601

Query: 695 RH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
              L  + +       T+    L R L     D   N+  RG+ 
Sbjct: 602 EEKLYMSGARSRRLFGTVFRNGLSRFLWE-IPDGNKNVDDRGEE 644


>gi|145218885|ref|YP_001129594.1| UvrD/REP helicase [Prosthecochloris vibrioformis DSM 265]
 gi|145205049|gb|ABP36092.1| UvrD/REP helicase [Chlorobium phaeovibrioides DSM 265]
          Length = 1065

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 98/840 (11%), Positives = 207/840 (24%), Gaps = 132/840 (15%)

Query: 175  EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGP 229
                                + +   +      +       R   EH     L +     
Sbjct: 291  ADAQEHAARLLRAAGETLAGYEKEKGKRGLLDFMDMLSISYRLFKEHPEVLALFRRRMEC 350

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            +++     + P    L+ ++         +   D       +    E+     S+     
Sbjct: 351  LVVDEFQDTSPLQFSLVWSLRKTEPTVPAIVVGDVKQAIMGFQNADERLLAEMSNK---- 406

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                Y  + L        E ++   N            +        S M   +I+    
Sbjct: 407  ----YPTSPLEGNWRSSPELMR-WINQVGGAMFHEGYTALEAKAKFRSSMEPLEIIAAAE 461

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIA-----LRMSLDENKKKSALITADRNLARRVKL 404
            P  +  ++   +    N  +E I+         L +  D      A+I            
Sbjct: 462  PLKEAAWASYTV----NRIQELIATKQQVWDKKLNVPRDIRGGDIAIICYKNKRLTFYAE 517

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L + GI   +     L  +    +    L  +    D  A   L    L          
Sbjct: 518  ALRKAGIRCRLEEEGWL-DSRIVQLAWQCLAYVADPGDRHAALYLASTEL---------- 566

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                                   L+S +   +        +      ++E  K+  V  +
Sbjct: 567  -------------------GTGSLQSALTGLMEGGAVGDRILEKLEGVAERPKDRTVDAI 607

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
              +   +T L  Y T      G  + +D  KL   C+Q +           ++    KT 
Sbjct: 608  --LDDIVTTLDLYGTITGWPDGAEARADLLKLQDECIQFMTSSREALSSGGYYGSGIKTF 665

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
             +     +E                    +     P I     + ++   +S+   +  +
Sbjct: 666  LAWLKAKMEATDSAG------------RENNTRPSPSIIDEEAVQLMTWHKSKGGEWPVV 713

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSD-----------------------LNLKTAEKYI 681
             + G+++G +P+              D                       +     E + 
Sbjct: 714  AVCGMDDGEFPRLPNTKVDYDDFSDLDTIMDHAWVRIHPKFSSKEKNDAFVEDLKPESHE 773

Query: 682  GQAAHDFEMANGTRH-LIYTRSL--RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                  +      R  +I        + N     + W +             +  +G  +
Sbjct: 774  NTKRLLYVALTRAREKVILEWPEYLPKTNGKWQGTYWAEFCRAAKAEVTPKGMSIKGVEF 833

Query: 739  LDWTRK--LDYTTKQPHYKRPKPFPPLEAQPRTYS--FSEIKQLINDPYAVYARRILKLD 794
                    L    +          P    +    S     +      P +++        
Sbjct: 834  SCPVSTITLKTGIEIEAASTESSLPVFGRRAIRRSTMPEPLTPEAVRPSSLHNDSGAAGT 893

Query: 795  FIPHFKKD----------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                 +             D  ++G + H     L         PE   L+    +    
Sbjct: 894  PREDIRYGKGFAIDIPGVDDPMEKGKILHRAFELL------SGHPEREELLAGAFEGLLA 947

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
               L P  +            +F        ++I +    +P  +A+++ G  + GF D 
Sbjct: 948  PGQLKPVYEA---------VRAFDSWLGSRFTAITR-HAELPL-LALDASGSVVAGFTDL 996

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQKLID---PQLSLEAAALKAGSFSQIDCRKVANLF 961
            +   +   + I D+K+      E  ++  +   PQL   A AL A        + V  L 
Sbjct: 997  VVETED-ALWIVDHKSDQVKTDELLEERFNIYLPQLRCYADALAAAR----PDKPVKGLM 1051


>gi|317507956|ref|ZP_07965650.1| hypothetical protein HMPREF9336_02022 [Segniliparus rugosus ATCC
            BAA-974]
 gi|316253744|gb|EFV13120.1| hypothetical protein HMPREF9336_02022 [Segniliparus rugosus ATCC
            BAA-974]
          Length = 273

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 81/271 (29%), Gaps = 39/271 (14%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
            T S S ++QL+  P      R +                 GT  H     L       + 
Sbjct: 8    TLSPSRVEQLLVCPLRWLFERAVPSAPGE-------AAAVGTAVHL----LASVSGRFSE 56

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
             E+   + + +     +   PP      R    ++  +F       +  + ++ V +P +
Sbjct: 57   EELASALDEAVSQADARSARPPWAAQRRREQLGRLLATFSGWLAASRGELTEVGVEVPVE 116

Query: 889  MAIESIG--------------------IHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928
            M + ++G                    + + G  DR++  + G + I D KT   P+   
Sbjct: 117  MTLPALGGRSGSLPRASRAPIADVELEVRIKGRIDRLEKTRDGELVIVDLKTAKTPRSV- 175

Query: 929  AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
            A    D QL+     +            VA    + L    K       ++    DE + 
Sbjct: 176  ASVHEDAQLACYQLVV-----GAAREEPVAGGRLVFLGAPRKDAGAAEREQPGLDDEAAR 230

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019
                 + E   L    +  F +       S 
Sbjct: 231  AWSDAVREAGALAVGPQ--FPARPNAGCASC 259


>gi|149177760|ref|ZP_01856360.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
 gi|148843410|gb|EDL57773.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
          Length = 755

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/620 (10%), Positives = 167/620 (26%), Gaps = 94/620 (15%)

Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
           +A +I   + +    +    +  E  G      A         + + L+E NA       
Sbjct: 136 IASMISRAKNDLITVDRFVEIYQESVGDHLQAVAA---RVYPMYQKLLLESNAVDFDDLL 192

Query: 212 IALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
           + +                    I++     +  A  +++  ++ +     V    D   
Sbjct: 193 LHVASLLKGSPELRATLDERYQYILVDEYQDTNLAQYQIIMGLSLNTRNLCVT--GDPDQ 250

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               W     ++      +                               +  +      
Sbjct: 251 SIYGWRGAKIENILQFERDFPD--------------------------CKTIRLEQNFRS 284

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
             +     D     N       +    +  S V L+   +ER EA  IA  +R ++D+ K
Sbjct: 285 TKEILRVADDLISHNQRRKVKSLFTENEEGSPVELLCFQDERHEADDIARRIRNAVDQGK 344

Query: 387 K---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
           +     A+     +L+R ++L L R  I   ++  +          L S L  +   +D 
Sbjct: 345 QEYTDYAIFYRVNSLSRELELALARHKIPYQLAGSVAFYERTEVKDLLSYLKLVNNPDDR 404

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
           +A + +V  PL                                 +     +++    +  
Sbjct: 405 VAFSRIVNKPL-------------------------------RGIGKTTQNKLIRWADER 433

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
            +   ++     D          ++     ++   +  +S      + +    T      
Sbjct: 434 GISLLEAAHQAADCPKLSKRAATMVARFAKMINGFSMADSGSVAHLMENIIDSTRMVDSW 493

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
               +      +    E  + +  +  I       +     ++++ T     + +     
Sbjct: 494 KESPDEADQQRIANVNELLSTAKKYDDI----YGEETTLEGFLEVSTLASATDQL---DT 546

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
            +  + ++    ++ L +  + + G+ + +               +  L  +  +    +
Sbjct: 547 DAGRVTLMTLHAAKGLEYPVVFIVGVEQNLI------------PHERVLREEFRDGLEEE 594

Query: 684 AAHDFEMANGTRH-LIYT----RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
               F         L  T    RS+R     TI S +L+ + V       D L +    +
Sbjct: 595 RRLFFVGITRAEQNLYLTQTRERSMRGRPWRTITSDFLKEIDVEFNDQSTDELFESRSHF 654

Query: 739 LDWTRKLDYTTKQPHYKRPK 758
            ++   +          +  
Sbjct: 655 DEFVESVKRGEIDTAALKAA 674


>gi|167036387|ref|YP_001671618.1| DNA-dependent helicase II [Pseudomonas putida GB-1]
 gi|166862875|gb|ABZ01283.1| UvrD/REP helicase [Pseudomonas putida GB-1]
          Length = 728

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/696 (8%), Positives = 169/696 (24%), Gaps = 123/696 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+R    ++ G     +  + +   +      A                  
Sbjct: 63  VTFTNKAAAEMRQRIEQLLGINPAGM-WVGTFHGLAHRLLRAHWQE-------------- 107

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
              ARL+  ++    D  + L     +   +      W A+     I+  + E  + + +
Sbjct: 108 ---ARLVQNFQILDSDDQQRLIKR--VMRELGLDEQKWPARQAQWFINGQKDEGLRPQHI 162

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG---- 225
            A  +        L    ++     + +              +  +    +H        
Sbjct: 163 QAGGD--------LFLATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPGLLEHYQ 214

Query: 226 -TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                +++     +       +  +A    GA ++   D       W     ++ +  ++
Sbjct: 215 RRFQHVLVDEFQDTNAVQYAWLRLLAR--GGASLMAVGDDDQSIYGWRGAKIENIHQYTA 272

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
           +   +                              +              +     N+  
Sbjct: 273 DFPDAEMI--------------------------RLEQNYRSTGGILKAANALIANNSGR 306

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRV 402
           L  ++         + L  A NE +EA  +   +   + +   + + A++      +R +
Sbjct: 307 LGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSRVL 366

Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
           +  L R  I   I  G             + L  I    +  A+  ++  P         
Sbjct: 367 EEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVP--------- 417

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                                     + +    +   + +          +      A  
Sbjct: 418 -------------------------PRGIGEKTVEAIREHARHSQLSMWEAMCQLLAAKA 452

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
           L       +   +       +   ++ +             +              E+G+
Sbjct: 453 LKGRAASALGAFIELIEGLAAKVVDMPL------HTMTQTTIEQSGLILYHQEEKGEKGQ 506

Query: 583 TLSSLFSKIIETGS-----CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                  +++            A+       +             E   ++ ++    ++
Sbjct: 507 ARVENLEELVSAARNFESADEDADLSPLSAFLGHASLEAGDTQADEHEDSIQLMTLHSAK 566

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RH 696
            L F  + L G+ EG++P                ++L+   +   +    +       R 
Sbjct: 567 GLEFPYVFLVGMEEGLFP--------------HKMSLEEPGRLEEERRLAYVGITRAMRQ 612

Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
           L+ T +       +     + R +          ++
Sbjct: 613 LVMTYAETRRLYGSETYNKVSRFVREIPPGLVQEVR 648


>gi|76809077|ref|YP_331538.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710b]
 gi|76578530|gb|ABA48005.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710b]
          Length = 733

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 79/711 (11%), Positives = 174/711 (24%), Gaps = 112/711 (15%)

Query: 34  FRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP------------IIKSL 81
                  P  +A+VT    T +A  E+R    ++   K+   P             + + 
Sbjct: 80  IEAKGFEPRHIAAVT---FTNKAAAEMRERVGKLLEGKTLTTPGKEGRKVPVNQLTVCTF 136

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             +  +    +                          +     D    +  E   +    
Sbjct: 137 HSLGVQILRQEAEHVGLKP-----------------QFSIMDSDDCFGMIQEQIGTTDK- 178

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 L + +  II + +      E+  A+           A        + +   L  
Sbjct: 179 -----GLIRKIQTIISLWKNGLVAPEE--AMTIAANEDEHQAAL-----VYRNYVATLHA 226

Query: 202 LNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             A              A +       +     ++I     +      L+  +A     A
Sbjct: 227 YQAVDFDDLIRLPTELFARNEPVRDRWQNRLRYLLIDEYQDTNACQYELLKLLAG--PRA 284

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                 D       W   T ++      +              +  L+       R+   
Sbjct: 285 AFTAVGDDDQAIYGWRGATLENLAQLGKDFP---------KLHVIKLEQNYRSTVRILTA 335

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +N +   +  + +  L  +                       + +   ++E  EA S+  
Sbjct: 336 ANNVIANNPKLFEKKLWSEH-----------------GMGDSITVTPCNDEEHEAESVVF 378

Query: 377 ALRMS---LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            L           +  A++      AR  +  L R  I   +S G           L + 
Sbjct: 379 RLSAHKFERRTQFRDYAILYRGNFQARVFEQVLRRERIPYVLSGGQSFFDKAEIKDLCAY 438

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L  I   +D  A    V  P    G        A      V+L        I       L
Sbjct: 439 LRLIANADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGI----EARL 494

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                +         Q      DKE A +++D +++ I          +         + 
Sbjct: 495 SARQVEPLRIFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNV 554

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +      +     E             +      ++       +       + +I  + 
Sbjct: 555 LEFLEWLKRKGTKPE------------AEQAVDGEAEGFHNADGLADTGKNLLGLIQTVA 602

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               ++ K E    + +     S+ L +  + L G+ EG+ P +   +            
Sbjct: 603 LMSMLEGKEEDPDAVRLSTVHASKGLEYPHVFLVGVEEGIMPHSGGSDD----------G 652

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA-----SRWLQRL 719
               E+   +    +      +  ++    ++            SR++  +
Sbjct: 653 PIDDERIEEERRLMYVAITRAQRSLHLNWCKKRKRARETIVCEQSRFIAEM 703


>gi|325689990|gb|EGD31994.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK115]
          Length = 766

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 67/627 (10%), Positives = 170/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 156 YANLADDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  ++     +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRERLDDFTVTELVEAVLEKTGYAAALAAQATLESQA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  +  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPTD-ESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRAS 587


>gi|92115386|ref|YP_575314.1| ATP-dependent DNA helicase UvrD [Chromohalobacter salexigens DSM
           3043]
 gi|91798476|gb|ABE60615.1| ATP-dependent DNA helicase UvrD [Chromohalobacter salexigens DSM
           3043]
          Length = 739

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 70/715 (9%), Positives = 178/715 (24%), Gaps = 115/715 (16%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +     T +A +E+R+    + G   ++     + +   +                    
Sbjct: 63  ILAVTFTNKAAREMRTRLEALLGLSLRNMW---VGTFHSIAHRLLRTHWHD--------- 110

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                   ARL   ++    D    L         I         K +   I   + E  
Sbjct: 111 --------ARLPQHFQIIDGDDQLRLVKRLLKDHRIDDERFPP--KQVQYFISGCKEEGL 160

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
           +   +    +             +    + +                +  +    ++   
Sbjct: 161 RAHQVQTHGD--------AYMGQMVELYERYQLACERAGLVDFGELLLRGLELLRDNPAL 212

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     +++     +       +  +A    G  V+   D       W     ++ 
Sbjct: 213 LAHYRERFSHLLVDEFQDTNTLQYAWLKLLAGDRAGMTVV--GDDDQSIYGWRGAKVENI 270

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
              +                                 +  +       S      +    
Sbjct: 271 RRFAEEFPN--------------------------TSTVRLEQNYRSTSAILEAANALIS 304

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397
            N   +  ++         +++    N+ +EA  I   L   +++   ++  A++     
Sbjct: 305 HNAGRMGKELWTDGVQGEPISVYAGFNDLDEARFIVDTLNEEVNKGSARRDIAILYRSNA 364

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L R G+   I  G      L      + L  +   +D  ++  +V  P    
Sbjct: 365 QSRVLEEALIRSGVPYRIYGGQRFYERLEIKNALAYLRLMLTRDDDASLERVVNVPARGI 424

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G     + R +   + V+            L    L   A    +      +   ++   
Sbjct: 425 GTRTVEVLRERARTQSVS----LWQALHDSLSEGALKGRAASALSAFSDLIERLDNDTAG 480

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L++H+L     L  ++  +    G   + +  +L          D          
Sbjct: 481 MALHELIEHVLHATGLLEHHRN-EKGEKGQARVENLEELINAARNFAQGDP---FSLQEI 536

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            E    L    ++        +A+                     +   ++ ++    ++
Sbjct: 537 GEGAAALEPFLAEAALNAGDHEAD---------------------DFEDSVQLMTLHSAK 575

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RH 696
            L F  + + G+ EG++P                ++L+   +   +    +       R 
Sbjct: 576 GLEFPVVFVAGVEEGLFP--------------HKMSLEEPGRLEEERRLCYVGVTRAMRK 621

Query: 697 LIYTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
           L  T +           +  SR+L  L      +     +          R L  
Sbjct: 622 LYLTHAEIRRLHGKETFSRPSRFLHELPEALLEEVRLRGQVSRPVTTRPGRGLSQ 676


>gi|325923760|ref|ZP_08185377.1| ATP-dependent DNA helicase Rep [Xanthomonas gardneri ATCC 19865]
 gi|325545758|gb|EGD16995.1| ATP-dependent DNA helicase Rep [Xanthomonas gardneri ATCC 19865]
          Length = 658

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/712 (8%), Positives = 163/712 (22%), Gaps = 126/712 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T ++ +E+R    +           I +   +  +    +   +         
Sbjct: 50  RIAAITFTNKSAKEMRERVAKRIRGDGAEGLTICTFHALGLKFLQIEHAAA--------G 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R   +                D   +    +  +  +AI  AKNL   I   +     
Sbjct: 102 LKRGFSIFD------------SDDAAAQIKDLMHGAKPDAIEDAKNL---ISRAKNAGMS 146

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E   A                     + +  RL   NA          ++    +    
Sbjct: 147 PEQAMAAARSNREKEAAS-------LYERYQARLTTFNAVDFDDLIRLPVQILEGNEEIV 199

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +   G +++     +  A  RL+  +A        +   D       W     ++  
Sbjct: 200 MGWRERIGYLLVDECQDTNDAQYRLLKMLAGPRGNFTCV--GDDDQSIYAWRGANPENLQ 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL                            ++     +     
Sbjct: 258 QM-----GRDYPALEIIKL---------------------EQNYRCSNRVLRAANALIAH 291

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA---LITADRN 397
           N       + + Q     + + E  +   EA  +A  +       +   +   ++     
Sbjct: 292 NPHEHLKTLWSDQADGERIRVWECRDSEHEAEKVAAEISFLGTAKQVPWSDFCILFRGNF 351

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    +   ++ G           + S L  I    D  A    V+ P    
Sbjct: 352 QSRPLEKALQLLRVPYHLTGGTAFLERQEVKDVLSWLRLIVNPEDDAAFLRAVQSP---- 407

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                          + +    +A               + E  
Sbjct: 408 ------------------------------KREVGATSLARLAELASAKSVPMSRAAESM 437

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L       ++       +       +   +  +        +    ++      F
Sbjct: 438 GALQHLPPRAANGLSAFTDILRDMREHSAAMPAGELVRTLAEKSGLLNDLRNQSKDETGF 497

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +   + L  L            A+       +   +   +   K +  + + ++    S+
Sbjct: 498 QRRKRNLDELAEWFEGGPRGASASD------LAAQLALLSRNDKDDGGNQVRMMTMHASK 551

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696
            L F  + + G           ++  L   +  +      E+        +      +  
Sbjct: 552 GLEFRYVFIVGC----------EDGVLPHEVSLEEGNLQEER-----RLLYVGITRAKEQ 596

Query: 697 LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           L  + S        ++    SR+   +          +     +   +    
Sbjct: 597 LWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASA 648


>gi|289522440|ref|ZP_06439294.1| ATP-dependent helicase PcrA [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504276|gb|EFD25440.1| ATP-dependent helicase PcrA [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 662

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 73/693 (10%), Positives = 159/693 (22%), Gaps = 133/693 (19%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTA--DLLLSYNLNPPV 103
            +     T +A +E++     + G     L  I +      E        +    +  P 
Sbjct: 56  QILAVTFTNKAAREMKERVWALLGSDINNL-HISTFHSYGVEFLYRYTKEVGEAGIRVPF 114

Query: 104 SNIQR---LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
           S   R      + RL+  +                     S                   
Sbjct: 115 SVFDRGDSQKLVERLMKDFNIDKKRFDASFLMNMISKAKASA------------------ 156

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 + L                +F       + + L    A       +  +     
Sbjct: 157 ----DPKTL-----SPNATLEARWREF----YDAYNKELKRQGALDFDDLLLLPLHLLTT 203

Query: 221 -----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                   +     +++           +L+  +A   N  +V    D       W    
Sbjct: 204 NKNVLLKERARFKWVLVDEYQDVNTPQYKLIELLAKSGNIMVV---GDPDQSIYGWRGAD 260

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                    +   +          +  LD        + + +N +   +           
Sbjct: 261 MSIIMNFERDFPGAK---------VITLDQNYRSTGMILDAANAVIKNN----------- 300

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                  +     +    +  + V +  A+ +R EA  IA  +R            A++ 
Sbjct: 301 ------IERRPKDLWTANQQGTPVTVYLANTDRMEAQFIADEIRKLCRSGYSFDDIAVLY 354

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
               ++R  + +L   GI   I  G+          + S +       D  A+  +   P
Sbjct: 355 RINAMSRSYEQDLMNRGIPYKIVKGVSFYERKEVKDVLSFMRLAVNPWDAAALHRIGNVP 414

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                                    R    K+        + +S
Sbjct: 415 ----------------------------------------SRGLGAKSLEAFEKSIASIS 434

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
              ++   L  +       PL               I      +      +         
Sbjct: 435 SGHEDPLPLWEEVHSSDALPLKGKAKAGARELAGHMI-QILSRSGDVADVISYIMEEMGY 493

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            L+  E+        S+ I     +     +    ++ +             S + +L  
Sbjct: 494 GLFLREQYPEDWESRSENIYELLSVNVEGGDLAKFLSVIALYSDADVDETSGSRVNLLTL 553

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + L G+ E ++P + AK               +  +   +    +     
Sbjct: 554 HAAKGLEFPVVFLVGMEENIFPHSRAKM--------------SDSELEEERRLCYVGMTR 599

Query: 694 TRH-LIYTRSLRE----NNIPTIASRWLQRLLV 721
               L  T + R     N      SR+L+ +  
Sbjct: 600 AMEKLYLTGAQRRMLFGNLQYNAFSRFLEEIPD 632


>gi|291613181|ref|YP_003523338.1| Exodeoxyribonuclease V [Sideroxydans lithotrophicus ES-1]
 gi|291583293|gb|ADE10951.1| Exodeoxyribonuclease V [Sideroxydans lithotrophicus ES-1]
          Length = 1134

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 85/919 (9%), Positives = 200/919 (21%), Gaps = 131/919 (14%)

Query: 94   LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
                 L    S  +      +  L  +   P   K    +   +  ++        + + 
Sbjct: 258  ASELELAWTDSRPEERFAKVQPSLFTQAGEPRSFKPTKQQDAEAFLVTREALFGSLQEVR 317

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            D +   +        LH                FL+   +    +  +++ S        
Sbjct: 318  DTLAEQQAYRLNEAVLHC------------GVAFLER-YQALKAQKQQMDFSDLEWQLCR 364

Query: 214  LMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA----IVLPGLDC 264
            L++        ++ +      +++     + P   +++    +          V    D 
Sbjct: 365  LLQQSEHAETMQYKLDSRYRHVLLDEFQDTNPLQWQILRAWFDASVAVDSQPTVFVVGDP 424

Query: 265  HIPTAIWNTITEKSTNITSS--NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
                  +     +   +        +S   Q +     +   +            +    
Sbjct: 425  KQSIYRFRRADARLFGVAREYLQEYFSAQTQGNSLTRRNSQPVVDAVNAVFHEQPDGFEF 484

Query: 323  RSMVISKSFLPPDT------------------------SDMRNTDILENKIPNIQKCFSD 358
                  +  LP                            +     + +       +    
Sbjct: 485  VEHQTHQKELPGYVLVLPLAVAEVIPSPNGGGDINGAGGEGEELRLRDPLTTPRDEAEEG 544

Query: 359  VALIEADNEREEAISIAIALR-----MSLDENKKKSALITADRNLARRVKLELTRFGINI 413
               IEA    E   +IA                    ++   R      +  L    I  
Sbjct: 545  ARQIEAAQFAEMLQTIARDWSVNEGGQERRATYGDIMVLVRSRTHLTVYEEALRARHIPF 604

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
              S    L  TL +  + +LL  +      +A+A +++ P+      +       +A   
Sbjct: 605  ISSRRGGLLDTLEAEDVQALLMFLITPFADLALAQVLRTPIFACSDADLMRLAQNSAEYG 664

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                                         T    WQ      D   A          +  
Sbjct: 665  ATSSEGG-----------AEISAQRSALGTRTSWWQRLQHLGDPSPA----------LRR 703

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
                     +    L + D           +        P +  +     L +     + 
Sbjct: 704  ATGLLQRWLALADKLPVHDLLDRIYFEGDVLARYAAVLPPEMRAKVAAN-LHAFMEIALS 762

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPK----IEKSSTLFILGTLESRLLNFDTLILGGL 649
              +    +   ++  +  L D +   P           + I    ES+ L    + L   
Sbjct: 763  VDAGRYPSLPRFLQELRELRDSKDDAPDEGKLGSAGDAVRIYTVHESKGLEAPIVWLLDA 822

Query: 650  NEGVWPKN------------TAKNPFLSRVMQSDLN---LKTAEKYIGQAAH----DFEM 690
            N                      + F     Q+          E+   Q A        +
Sbjct: 823  NAEKRSMAGNDVLLDWPTQEPQPSHFSLYADQASRGKKRAHLFEQDAAQQAREEMNLLYV 882

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            A          S  +      ++ W +R+  +           R        ++      
Sbjct: 883  AMTRAQQALIVSGNKGGKENRSTTWYERIAAVA---RDQENPLRKAVPSAVEKQGAAGLV 939

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                  P          +      +  L+         + L             ++  G 
Sbjct: 940  TLPAIEPAGKRAARNTMQQQRGIWLHALL---------QHLSETSPDVTTSHSTKSASGQ 990

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI----SHS 866
            +         +              ++++             + + +   H +       
Sbjct: 991  VAGFRPPLTPRPLPAGEGAFTGPGEREMLQQRLG--IPFAEFESLLQQAQHLLTLPQLVR 1048

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
            F +  +   +  E  ++N   ++             DR+       V + DYK G     
Sbjct: 1049 FFDDRQYRNACNEMPYINARGELK----------RIDRLVEFDD-EVWVVDYKLG----D 1093

Query: 927  ETAQKLIDPQLSLEAAALK 945
                     Q+    AA+K
Sbjct: 1094 SEDADRYRQQMQEYRAAMK 1112


>gi|291615299|ref|YP_003525456.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1]
 gi|291585411|gb|ADE13069.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1]
          Length = 722

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/577 (9%), Positives = 143/577 (24%), Gaps = 102/577 (17%)

Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM----- 223
           L A + E Y  +     +        +  +             +      + +       
Sbjct: 153 LRAHEVEAYDPYTRRKVE----VFAEYDAQCQREGVVDFSELLLRCYELLSRNQPLREHY 208

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
           +     I++     + P   R +  +A   N   +    D       +      +     
Sbjct: 209 QERFKHILVDEFQDTNPLQYRWLKLLAGQNNA--LFAVGDDDQSIYAFRGANVGNMQELL 266

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +              +  L+        + + +N +   +                  +
Sbjct: 267 RDFQVEN---------VIKLEQNYRSHGNILDAANALIQNNR-----------------N 300

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARR 401
            L   +         + + EA  + +EA  +   +R    E  +  + AL+      +R 
Sbjct: 301 RLGKNLWTDADKGEQIRVYEAGTDVDEAAFLVEEIRQLNREGVRLSEMALLYRSNAQSRV 360

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           ++  L   G++  +  G+            + L  +   +D  A+  ++  P        
Sbjct: 361 LEHALVSAGLSYRVYGGLRFFERQEIKHALAYLRLMENTDDDNALLRIINFP-------- 412

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                                            R    ++   +     + +    + A 
Sbjct: 413 --------------------------------TRGIGARSIEQLQEAAKQYNTTLWDAAA 440

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                +   +  + + ++   +      I    + +            +K       E  
Sbjct: 441 RAGGKVTAFVGIIESLRSGTQNLPLPEIIEHVLQHSGLADHYKNETGAKKREAEERLENL 500

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
             L +  +  +         A      +T            +    L ++    ++ L F
Sbjct: 501 NELITAATMFVHENEDDSLTA-----FLTHASLEAGEHQAGDSEDALHLMTVHAAKGLEF 555

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
            T+ + GL E ++P   + +                E+ +   A    +    R L  T 
Sbjct: 556 HTVFITGLEESLFPHQNSIDN----------GDLDEERRLMYVA----ITRARRRLYLTF 601

Query: 702 SLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
           +            +AS +L+ L           +  R
Sbjct: 602 AQSRMLHGQTHYGMASSFLRELPEELLHWITPRVSAR 638


>gi|162147772|ref|YP_001602233.1| DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786349|emb|CAP55931.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
          Length = 743

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 81/727 (11%), Positives = 181/727 (24%), Gaps = 124/727 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKK--STILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            +     T +A +E+R     + G+      L    +   +              L    
Sbjct: 69  QILAVTFTNKAAREMRERIGALLGEPVEGLWL---GTFHALCARMLRRHAEY-VGLGSGF 124

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           + +    +L RL+      L    K   P+  L +                 I   +   
Sbjct: 125 TILDTDDQL-RLLKQVIEPLRIDTKRWPPQGILGV-----------------IQRWKDRG 166

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              E +   ++  +                 +  RLV+LNA       + +         
Sbjct: 167 LTPERVTPAEDCDFAGGQCR------PIYATYQARLVQLNACDFGDLMLHVTEILRTRPD 220

Query: 224 KGTK-----GPIIIAGSTGSIPATARLMSTVA-NHPNGAIVLPGLDCHIPTAIWNTITEK 277
              +       I++     +       +  +A      A +    D       W     +
Sbjct: 221 VLAQYHRLFRYILVDEYQDTNTIQYLWLRLLAQREGQPANICCVGDDDQSIYSWRGAEVE 280

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +      P  ++ +L        + +     +     GR              
Sbjct: 281 NILRFERDF-----PGAAVVRLERNYRSTAQILGAASGLIAHNDGR-------------- 321

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITAD 395
                     +          V +    +  +EA  +   +           + A++   
Sbjct: 322 -----LGKTLRPGREDASGEKVRVASVWDSDDEARLVGEEVERLRAGGHSLAEIAILVRA 376

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
               R  +  L   G+   +  G+            + +  + +  D +A   ++  P  
Sbjct: 377 GFQTRAFEERLITLGLPYRVVGGLRFYERSEIRDAMAYMRVLNQPADDLAFERIINVPRR 436

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G                           M L + V+D IA                  
Sbjct: 437 GIGAAAMQKFHVAAR------------EGQMPLAAAVMDLIARGALKGRA---------- 474

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                    + +   +  L   +         + +    + +                 L
Sbjct: 475 --------REQMTALMACLARGREALPREGHVVVVETLLEESGYIDMWKADTSPEAPGRL 526

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +E     + F            +   +++ +  +++ E    +   +  L I+    
Sbjct: 527 DNLKELVRALADFE-----------SLGGFLEHVALVMENE----ENAGAERLSIMTLHG 571

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L FDT+ L G  EGV+P     +         +  LK  E+    A      A    
Sbjct: 572 AKGLEFDTVFLPGWEEGVFPSQRTLD---------EGGLKGLEEERRLAYVGITRA--RH 620

Query: 696 HLIYTRSLRENN----IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
             + + +            I SR+++ L     T      + R + +      L  T   
Sbjct: 621 RAVISHAASRRIYGNWQSAIPSRFIEELPAEHVTTTGGAAQARSRTFGH--APLSSTAFP 678

Query: 752 PHYKRPK 758
              +RP+
Sbjct: 679 VMARRPR 685


>gi|328462071|gb|EGF34244.1| ATP-dependent helicase [Lactobacillus helveticus MTCC 5463]
          Length = 745

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 82/691 (11%), Positives = 184/691 (26%), Gaps = 120/691 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLL-LSYNLNPP 102
           ++     T +A  E+R    ++ G  +       + +   +       D   + Y+ N  
Sbjct: 56  NILAITFTNKAANEMREREQKLLGPAAQNIW---MSTFHALCVRILRRDADKIGYSHNFS 112

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +++    L L + I            DL     +  P    +AI   KN  D++D     
Sbjct: 113 IADSAEQLTLVKHIEK----------DLNINPKMYDPRGILSAISNGKN--DLLD----- 155

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RA 217
               +   A  +  +               + +  RL            +  +       
Sbjct: 156 ---PKAFAASASSPFD-------KMAAKIYEEYQRRLRRDQIMDFDDLIMQTLVLFKKDP 205

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           E  H  +     I++     +  A   L   +A       V+   D       W     +
Sbjct: 206 ETLHYYQNKFRYILVDEYQDTNQAQYELCHALAAQYKNICVV--GDADQSIYGWRGANME 263

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +     S                        D K+ G  + ++              ++ 
Sbjct: 264 NIMNFES------------------------DYKKDGVKTVKLEQNYRSTGHILSAANSV 299

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALITA 394
              N +     +   Q   + V   +A +  +EA  I   ++  ++      K  A++  
Sbjct: 300 IKNNQNRKAKNLWTDQGEGAKVTYYQAQSGDDEAHYIISKIKEEVEAKKRTYKDFAILYR 359

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R V+    +  I   I  G           + + L  +    D M++  ++  P 
Sbjct: 360 TNAQSRTVEEAFVKSNIPYQIVGGHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINVPK 419

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G        A                                 ++       +R ++
Sbjct: 420 RGIGAATVDKLLAFADENHYN--------------------ALDAMDHVAESPINTRTAK 459

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           +  +    L D I    T  VT  T K  +    + +   + T+     +          
Sbjct: 460 KLSDFGTKLRDAIAYAQTHGVTGLTEKILSDFEYTDALRAENTIEAETRL---------- 509

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
               E      S+  +  +     +  +    D +  +          E  + + ++   
Sbjct: 510 ----ENLDEFLSVTKRFDDHYEPDEDESNPLSDFLAEVSLLSDQDDLDEDDNQVALMTLH 565

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ +G++P   A              +    +   +    +      
Sbjct: 566 AAKGLEFPVVFLVGMEDGLFPLQRA--------------MMDDNELEEERRLAYVGITRA 611

Query: 695 -RHLIYTRSLRE----NNIPTIASRWLQRLL 720
            + L  T +              SR+L  + 
Sbjct: 612 KKELYLTNAYSRMMYGRMQNNPPSRFLDEID 642


>gi|197105764|ref|YP_002131141.1| DNA helicase II [Phenylobacterium zucineum HLK1]
 gi|196479184|gb|ACG78712.1| DNA helicase II [Phenylobacterium zucineum HLK1]
          Length = 774

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/580 (10%), Positives = 141/580 (24%), Gaps = 66/580 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R     + G  +  L  + +   V  +                  
Sbjct: 76  ELLAVTFTNKAAREMRERISHMIGPAAEGLRWLGTFHSVAAQI----------------- 118

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D  + L  +   +  I         K LA +ID  +    +
Sbjct: 119 LRRHAELVGLKSNYTILDDDDQERLIKQILEAENIDAKRWTP--KALAGLIDHWKNRGWR 176

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + L   + + +      A        + + ERL  LNA       +  +          
Sbjct: 177 PDQLPPAEAQAFANGRGQAL------YRLYQERLRVLNACDFGDLLLHNITIFTSQPDVL 230

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    +++     +  A    +  +A        +   D       W      +  
Sbjct: 231 ADYHARFRYLLVDEYQDTNVAQYLWLRLLAQKSQNLCCV--GDDDQSIYGWRGAEVDNIL 288

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G     +       S            
Sbjct: 289 RFERDFP--------------------------GAKVVRLERNYRSTSHILAAASGLIAA 322

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNL 398
           N   L   +    +    V +    +   E+  IA  +  +       +  A++      
Sbjct: 323 NKSRLGKTLWTEAEGGEKVIVRGVWDGEAESRLIADEIERAKRAGRRYRDIAILVRASFQ 382

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            R  +       I   +  G             + L  I   +D +A   +V  P    G
Sbjct: 383 MRAFEERFVLLQIPYTVVGGPRFFERAEIRDAHAYLRLIQSEDDDLAFERIVNTPKRGIG 442

Query: 459 FPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                 L +      + A R  +      +L +     +A    +      +++     +
Sbjct: 443 DTTVQKLLQVARLNGVSATRAARQIVLTDELAARTRTSLANFLRDLDRWRAEAQHVAHPR 502

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            +  +L +        L    T +        +        T    +       +  +  
Sbjct: 503 LMEAVLEESGYTDALRLDKSPTAQTRLENLKELVQSMGNFDTLQAYL-----EHVSLVMD 557

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
            + G    ++    + +   ++   +        +   + 
Sbjct: 558 LDRGPAADAVQIMTLHSAKGLEFPLVFLPGWEEGVFPSQR 597


>gi|260654127|ref|ZP_05859617.1| ATP-dependent DNA helicase PcrA [Jonquetella anthropi E3_33 E1]
 gi|260631112|gb|EEX49306.1| ATP-dependent DNA helicase PcrA [Jonquetella anthropi E3_33 E1]
          Length = 673

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/692 (9%), Positives = 153/692 (22%), Gaps = 124/692 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNL-NPPVS 104
            +     T +A +E+        G+    L  +++      +           L  PP  
Sbjct: 74  RILAVTFTNKAAREMLDRLTASLGENLAGL-QVRTFHSFGLQMLFRSRAQLEQLGYPPQC 132

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            +    +           L    +   P   L                 + I   +    
Sbjct: 133 VVYDRADSLSAAKAVLEALNLDPEQYTPAWVL-----------------ETISKAKNSG- 174

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH--- 221
                  L               +    + +   L    A          +         
Sbjct: 175 -----AGLGAFDNSP----MKSIVGPLYERYDGLLKSRGAWDFDDLIALPLELLTRFPEV 225

Query: 222 --LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     +++        A  RLM  +A+   GA +    D       W        
Sbjct: 226 KEREQKALDWVLVDEYQDVNAAQYRLMRLLAS--GGANLTAVGDPDQSIYGWRGADMSMI 283

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +   ++     +  L          ++   ++ +  + R      +         
Sbjct: 284 MNFERDFPGAS-----VMLLEQNYRSTGGILEAANSLISHNFDRREKNLWTDREQGAKPQ 338

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRN 397
                                        +EA  I   +   L    +    A++     
Sbjct: 339 VWN---------------------CPTSDDEAELITTEIERFLSSGYRASDVAILYRMNA 377

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
           L+RR++  L    +   +  G           + S L       D  ++  +   P    
Sbjct: 378 LSRRIEESLLSHNLPYQVVRGQGFFDRREVRDVLSYLRLALNPYDRASLDRVGNLPTRGL 437

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G        A       A   +  +        L     A  +              + K
Sbjct: 438 GPRSLDKLDAYLLSHRTADPADVWAAVAQTGAELSGQGAAGARQLAGAMGEILGCGGDLK 497

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
               +++  I               +    +  + W       ++ + L           
Sbjct: 498 RALDVILMRIGY------------ETVLQKIDPAGWEDRYDNVMEILSLAGDG------- 538

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                          ++   + A A  + D             +      + +     ++
Sbjct: 539 ---------------DSLPELLAQAALYTDA-----------DRDSGGQGINLSTLHGAK 572

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---NLKTAEKYIGQAAHDFEMANGT 694
            L F  + + GL EG++P + + +       +  L    +  A++ +           G+
Sbjct: 573 GLEFPLVFMIGLEEGIFPHSRSSDDPAEIEEERRLCYVGMTRAQERLILTRVRERRLFGS 632

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
                             SR+L  +      +
Sbjct: 633 T------------TTQRPSRFLAEIAPDLRDE 652


>gi|159039726|ref|YP_001538979.1| ATP-dependent DNA helicase PcrA [Salinispora arenicola CNS-205]
 gi|157918561|gb|ABV99988.1| ATP-dependent DNA helicase PcrA [Salinispora arenicola CNS-205]
          Length = 794

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 75/694 (10%), Positives = 188/694 (27%), Gaps = 108/694 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTAD-LLLSYNLNPPV 103
             +     T +A  E++    ++ G ++ ++  + +          A+           +
Sbjct: 81  GEIIAITFTNKAAGEMKDRVAQLVGPRARLM-WVSTFHSACVRILRAEHEHAGVKSTFSI 139

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            +      L +L+    +  P                    A  LA  ++++ + +    
Sbjct: 140 YDADDSRRLMQLVARELDLDPKRYP----------------ARGLAAQVSNLKNEL---- 179

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              E                    L  A   +  RL E +A       +  +     H  
Sbjct: 180 VDPEAFAGRAKGPN-------ERALAEAYTLYQRRLREAHALDFDDLIMTTVHLLQSHPH 232

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG---AIVLPGLDCHIPTAIWNTIT 275
                +     +++     +  A   L+  + +   G   A +    D       +   T
Sbjct: 233 VAETYRRRFRHVLVDEYQDTNHAQYVLIKELVSGTAGLDPAELCVVGDADQSIYAFRGAT 292

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++      + T +             L+      + + N +N +  R+           
Sbjct: 293 IRNILEFERDFTDARTIL---------LEQNYRSTQTILNAANAVIDRN----------- 332

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALI 392
                 T     ++ +       +    AD E  EA  +A     L    D      A+ 
Sbjct: 333 ------TSRKPKRLWSEAGSGDPIVGYVADTEHTEADWVAREIDRLVDDGDTRPGDVAVF 386

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R  +    R G+   +  G+            + L A+   +D +++  ++  
Sbjct: 387 YRTNAQSRVFEEVFIRVGLPYKVVGGVRFYERKEVRDALAYLRALVNEDDTVSLRRVLNT 446

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P    G                                      A    +        R 
Sbjct: 447 PRRGIG------------------------------DRAEACVEALASRDRISFGAALRR 476

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
           ++E   ++    + I   +  L   +    ++     +      +   ++     + +  
Sbjct: 477 AKEAPGISTRAANGIADFVALLDGAREVAENSAPEEVLEVLLNRSGYLMELEESLDPQDA 536

Query: 573 PNLWFEEEGKTLSSLFSKIIETGS--CIKANAIEWIDIITRLIDGETVKPKIEKS-STLF 629
             +   +E  +++  +++ +E       +A    +++ +  + D + V     +    + 
Sbjct: 537 GRVDNLQELVSVAREYTERVEALGAEGERATVAGFLEQVALVADADQVPADDPEHQGVVT 596

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
           ++    ++ L F  + L G+ +GV+P             +  L      +   +      
Sbjct: 597 LMTLHTAKGLEFPVVFLTGMEDGVFPHARTFGDNHELEEERRLAYVGITR--ARQRLYLS 654

Query: 690 MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
            A        TRS          SR+L  L    
Sbjct: 655 RA-------ITRSAWGQPAYNAPSRFLAELPEEL 681


>gi|293609015|ref|ZP_06691318.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829588|gb|EFF87950.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325121212|gb|ADY80735.1| ATP-dependent DNA helicase [Acinetobacter calcoaceticus PHEA-2]
          Length = 679

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 79/688 (11%), Positives = 177/688 (25%), Gaps = 110/688 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +T    T +A +E++    ++  ++      + +           +L  +  L    S 
Sbjct: 53  RITAMTFTNKAAREMKERVTKLLSREEAKGLSVSTFHTFGLNLLRLELK-NLPLKANFSI 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +      A         L         ES   +  +         +L  + +   +  + 
Sbjct: 112 LD-----ADDCKRILMDLMHRDNLSGAESKELIAKAMKKISDWKNDLI-LPEQAHSTCET 165

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY-----QIALMRAEAE 220
            ED+                       + +   L   NA           ++    AE  
Sbjct: 166 PEDVQ-----------------FAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVR 208

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     +  A   L+  +             D       W     ++  
Sbjct: 209 DKWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMG--QFTAVGDDDQSIYAWRGAKPENMA 266

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
           +   +                                 ++       S+     +     
Sbjct: 267 LLKQDFPN--------------------------LHIIKLEQNYRSTSRILKAANCVIQN 300

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRN 397
           N  I + K+ + +     + +I   N+ +EA  +   L      N K     A++     
Sbjct: 301 NPHIFDKKLWSDKGHGEVIRIITCRNDDDEAERVVKDLLTHKLMNGKNWKDYAVLYRGNF 360

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            AR ++ +L +  I   +S G           + S L  I    D  A   ++  P    
Sbjct: 361 QARVLETQLRQMQIPYKLSGGTSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAI 420

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G          +    ++                +L   A Q+ +  +P        E  
Sbjct: 421 GPVTLEKLGLFSQENNLS----------------LLGASADQRLSMVLPKKAETQLHEFA 464

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +        +L+   P+   +   N       + +                 ++   L  
Sbjct: 465 DFIATFTRELLEDDEPVPKVRQMMNEAGYMDYVRE-----------QSATPAQEKSKLDN 513

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            E   T         E        ++    ++  L++ +    + E +  + +L    ++
Sbjct: 514 IENLFTSIQNLINRAEDVDEKNIESVIRKLVLLDLLEQQ---QEEEDTDKVNLLTLHAAK 570

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696
            L F  + + GL E + P   +                 AE    +    +      R  
Sbjct: 571 GLEFPYVYIMGLEEELLPHKNSI---------------AAETIEEERRLMYVGITRARQG 615

Query: 697 LIYTRSLRENNI----PTIASRWLQRLL 720
           L  T + +  N         SR+L  L 
Sbjct: 616 LTLTLAEQRKNGGQMKQMTPSRFLDELP 643


>gi|225873408|ref|YP_002754867.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793677|gb|ACO33767.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
           capsulatum ATCC 51196]
          Length = 943

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 62/532 (11%), Positives = 150/532 (28%), Gaps = 67/532 (12%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+     T +A +E+      + G  +   P++ +           D+     L      
Sbjct: 54  SILAVTFTNKAAKEMAERVDALIGHSTLAKPVLATFHSFCVRMLRRDIEA---LRIGNEG 110

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           + +   +       ++ +  I++ +  +     P    + I  AK               
Sbjct: 111 LTKTFAIYDESDQ-QSLVKQIMRRMGLDDKQLTPRVVLSKISWAK----------NHMID 159

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR-----AEAE 220
            ++   L++       +          + + + L + NA       +  +R     AE  
Sbjct: 160 PQEY-YLQSSDPVAERVAH------IFEAYRKDLRKNNALDFDDLLLEAVRLLKSSAEVR 212

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    ++I     +      LM  +A   +   V+   D       W     ++  
Sbjct: 213 ERYNRRYQYLLIDEYQDTNRPQYELMKLLAGSRHNVCVV--GDEDQSIYSWRGADIRNIL 270

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +      P     +L       +  ++  G V +    R                 
Sbjct: 271 EFEKDF-----PNAQTIRLEQNYRSTQVILEAAGAVVSRNEQRK---------------- 309

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-----KSALITAD 395
                   +   ++  S +   EA +   EA+ IA +++  L +  +     ++A++   
Sbjct: 310 -----GKSLWTSREGGSLIGFYEAPDGENEALFIADSIQKYLRKAGESAEQPRAAVLYRT 364

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            + +R V+  L R+GI   +  G           L S L  +   ND +A+  +V  P  
Sbjct: 365 NSQSRLVEEALRRYGIRYTMVGGFSFYERAEIKDLLSYLKLVQNPNDSIALQRIVNTPAR 424

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G                       +     +   + +++   +    +  +   + + 
Sbjct: 425 GIGKTTMETLERIALE--------TGTSTWNGIVRALREKLLPSRALVALDTFVRLIEDA 476

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
              LA    + +   +       ++      +   S       T   +   D
Sbjct: 477 RALLAPDFAEKLAADVAAESGEMSDAAEPESDTDFSFAAAADETTSPDASAD 528


>gi|294666234|ref|ZP_06731487.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604007|gb|EFF47405.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 728

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 64/710 (9%), Positives = 164/710 (23%), Gaps = 120/710 (16%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E+R         G +      I +   +           +        + +
Sbjct: 60  VTFTNKAAGEMRHRTDLQLRNGSRWIW---IGTFHGLAHRLLRLHWQDARLPEGFQVMDS 116

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R++                                       I+  + E ++
Sbjct: 117 DDQLRLVKRVVQALELDESKYPPKQMSWW---------------------INEQKDEGRR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +      +    W             + ER             +       +     
Sbjct: 156 PQHIQ----PEPNDDWTEVRRQ---VYAAYQERCDRSGLLDFAELLLRAHELLRDTPALL 208

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A       V    D       W     ++  
Sbjct: 209 AHYRARFREILVDEFQDTNAIQYAFVRVLAGESGN--VFVVGDDDQAIYGWRGAKVENVQ 266

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G  +  +       +      +     
Sbjct: 267 RFLKDFP--------------------------GAQTVRLEQNYRSSANILGAANAVIAH 300

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA  +    R  + +     + A++      
Sbjct: 301 NPDRIGKQLWTDSGDGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAQ 360

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L    +   +  G+            + L  +   +D  A    V  P     
Sbjct: 361 SRALEEALISEQLPYRVYGGMRFFERAEIKDALAYLRLLTNRSDDAAFERAVNTP----- 415

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        +    LD +      + +  W++ +    + 
Sbjct: 416 --------------------------TRGIGDRTLDEVRRLARASALSLWEAAMLCTQQN 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                  + L     L+     +          D   +     ++   +    L +    
Sbjct: 450 TLAARARNALATFLSLIGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGLDSESRT 509

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E    L S+ S+             E +  +                  + ++    ++ 
Sbjct: 510 ENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMTLHSAKG 569

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + L GL +G++P   +              L+ + +   +    +      R  L
Sbjct: 570 LEFPIVFLVGLEDGLFPSARS--------------LEESGRLEEERRLAYVGITRARQKL 615

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
           +   +        +   + SR+L+ +      +    ++      L   R
Sbjct: 616 VLCYAESRRIHGQDNYNVPSRFLREIPRDLLNEVRPKVQVSRTASLGAAR 665


>gi|163794460|ref|ZP_02188431.1| UvrD/REP helicase [alpha proteobacterium BAL199]
 gi|159180184|gb|EDP64707.1| UvrD/REP helicase [alpha proteobacterium BAL199]
          Length = 798

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/590 (11%), Positives = 146/590 (24%), Gaps = 73/590 (12%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           +V     T RA +E++     I G  +                    + L          
Sbjct: 81  NVLAVTFTNRASREMKERVARIVGPAA------------------EQVWLGTFHALAARI 122

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  E+  L   +     D    L  +  +       +  W A+ +  +I   +     
Sbjct: 123 LRRHAEVVGLRSNFTILDADDQVRLLKQ--VLQAEDIDDKRWPARVVMGVIQRWKDRGLG 180

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAE 220
            E +   +              L+   + + ERLV  NA+      +  +     R E  
Sbjct: 181 PEKIGVAEVGDLAG------GRLQEVYRQYQERLVTQNAADFGDLLMHNLTLFQSRPEIL 234

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     +  +    +  +A        +   D       W      +  
Sbjct: 235 KDYQERFRYLLVDEYQDTNVSQYLWLRLLAQSHKNICCV--GDDDQSIYGWRGAEIGNIL 292

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
              S+                            G     +       S+           
Sbjct: 293 KFESDFP--------------------------GATVVRLEQNYRSTSRILAAASQVIAN 326

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--KKKSALITADRNL 398
           N   L   +         V +    +  EEA  +   +     ++      A++      
Sbjct: 327 NEGRLGKTLWTEGDHGDKVVVRGVWDGEEEARVVGDRIEDFQRKSVALSDMAVLVRAGFQ 386

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            R  +  L   G+   +  G             + L  I + +D MA   +V  P    G
Sbjct: 387 TREFEERLITLGVPYRVVGGARFYERKEIRDAVAYLRVINQPDDDMAFERIVNVPRRGIG 446

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                        + ++L    ++    D       R      +      ++   E   +
Sbjct: 447 DTTMRAVHGYARAQGLSLTRAVDALVQTDELPSAARRNLRTLMDAFGRWREAAQVEGLAD 506

Query: 519 LAVLLV-----------DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
           L   ++           D   +    L   K    +     +++ + +  ++ +     D
Sbjct: 507 LVRAVLDESGYTESLQKDRSPEAPGRLENLKELVTALEEYETLAGFLE-HISLVMENADD 565

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                 +L      K L      +      +  N     +     ++ E 
Sbjct: 566 PDEAKISLMTLHAAKGLEFDVVFLPGWEEGLFPNQRALDENGAAGLEEER 615


>gi|254556106|ref|YP_003062523.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1]
 gi|254045033|gb|ACT61826.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1]
          Length = 755

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 86/687 (12%), Positives = 186/687 (27%), Gaps = 107/687 (15%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLG 82
           +L   +        +NP    +V     T +A +E+R    ++ G+ +       + +  
Sbjct: 38  VLTHRVAYLIEEQGVNPW---NVLAITFTNKAAREMRERVGKLLGESAQEVW---VSTFH 91

Query: 83  DVVEEKFTADLL-LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            +       D+  + YN    ++       L + IL           +   +S    P S
Sbjct: 92  ALCVRILRRDIEQIGYNRAFTIAGTSEQRTLVKRIL----------TEQNIDSKKFDPRS 141

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
             +AI  AK      + ++T E   E   +                       +   L  
Sbjct: 142 ILSAISNAK------NDLQTPEMYKESAASPFESVVAD-----------VYLQYQRELAA 184

Query: 202 LNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             A       +  ++   +        +     I +     +  A   L++ +A+     
Sbjct: 185 DQAVDFDDLIMLTIQLFKQNPETLAWYQNKFHYIHVDEYQDTNNAQYTLVNLLADKYKNL 244

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V+   D       W     ++            +PQ     L       +  +     V
Sbjct: 245 CVV--GDADQSIYGWRGANMENILDFEK-----DYPQADTVMLEQNYRSTKTILSAANAV 297

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
            N    R                        K+    +    ++     +E +E   +  
Sbjct: 298 INNNSTRRPK---------------------KLWTENEPGDKISYYRGQSESDETHFVIA 336

Query: 377 ALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            ++ S+ +   +    A++      +R ++  L +  I   +  G           + S 
Sbjct: 337 KIQESMQQDKMDYGDFAILYRTNAQSRVMEESLVKANIPYTMVGGNKFYDRKEIRDVLSY 396

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSYDIMDLKSLV 492
           L       D M    +V  P    G       R   +      L    N      + +  
Sbjct: 397 LTLAVNDQDSMNFERVVNEPKRGIGQTSVEKLRLFADEAGYSMLEAASNVDMANGISARA 456

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
              +A                                 +  L   +   + T     I D
Sbjct: 457 KGALAKFAA----------------------------TMNELRAMREYLSVTDLTQEILD 488

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
            T                    +   EE  +++  F    +       ++ +++D +  L
Sbjct: 489 RTGYMKALKDAKATKSLEAQARIENIEEFLSVTKQFDDSYQPEDE---DSDKFVDFLADL 545

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA---KNPFLSRVMQ 669
                V    E+   + ++    ++ L F  + L G+ EG++P + A   ++        
Sbjct: 546 ALVSDVDNVEEEPQAVTLMTLHAAKGLEFPVVFLIGMEEGIFPLSRAMMDEDELEEERRL 605

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + + +  AEK +        M  G R 
Sbjct: 606 AYVGITRAEKKLYLTNAYSRMLYGRRQ 632


>gi|21233561|ref|NP_639478.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770527|ref|YP_245289.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188993747|ref|YP_001905757.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21115421|gb|AAM43360.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575859|gb|AAY51269.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167735507|emb|CAP53722.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris]
          Length = 658

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 64/712 (8%), Positives = 162/712 (22%), Gaps = 126/712 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T ++ +E+R    +           I +   +  +    +   +         
Sbjct: 50  RIAAITFTNKSAKEMRERVAKRIRGDGADGLTICTFHALGLKFLQIEHAAA--------G 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R   +                D   +    +  +  +AI  AKNL   I   +     
Sbjct: 102 LKRGFSIFD------------SDDAAAQIKDLMHGAKPDAIEDAKNL---ISRAKNAGMS 146

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E   A                     + +  RL   NA          ++    +    
Sbjct: 147 PEQAMAAARSNREKEAAS-------LYERYQARLTTFNAVDFDDLIRLPVQILEANEEIV 199

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +   G +++     +  A  RL+  +A        +   D       W     ++  
Sbjct: 200 MGWRERIGYLLVDECQDTNDAQYRLLKMLAGPRGNFTCV--GDDDQSIYAWRGANPENLQ 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL                            ++     +     
Sbjct: 258 QM-----GRDYPALEIIKL---------------------EQNYRCSNRVLRAANALIAH 291

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLDENKKKSALITADRN 397
           N       + + Q     + + E  +   EA  +A  +     +         ++     
Sbjct: 292 NPHEHLKTLWSDQADGERIRVWECRDSEHEAEKVAAEISFLGTAKQVPWSDFCILFRGNF 351

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    +   ++ G           + S L  I    D  A    V+ P    
Sbjct: 352 QSRPLEKALQLLRVPYHLTGGTAFLERQEVKDVLSWLRLIVNPEDDAAFLRAVQSP---- 407

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                          + +    +A               + E  
Sbjct: 408 ------------------------------KREVGATSLARLAELASAKSVPMSRAAESM 437

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L       ++       +       L   +  +        +    ++      F
Sbjct: 438 GALQHLPPRAANGLSAFTDILRDMREHSATLPAGELVRTLADKSGLLNDLRNQSKDEAGF 497

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +   + L  L            A+       +   +   +   K +  + + ++    S+
Sbjct: 498 QRRKRNLDELAEWFEGGPRGASASD------LAAQLALLSRNDKDDGGNQVRMMTMHASK 551

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-H 696
            L F  + + G           ++  L   +  +      E+        +      +  
Sbjct: 552 GLEFRYVFIVGC----------EDGVLPHEVSLEEGNLQEER-----RLLYVGITRAKQQ 596

Query: 697 LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           L  + S        ++    SR+   +          +     +   +    
Sbjct: 597 LWMSYSKLTRKFGEHVRLKPSRFFDEIPAAELQRDGADPVADAERKKERANA 648


>gi|317124888|ref|YP_004099000.1| RecB family exonuclease-like protein [Intrasporangium calvum DSM
           43043]
 gi|315588976|gb|ADU48273.1| RecB family exonuclease-like protein [Intrasporangium calvum DSM
           43043]
          Length = 279

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 74/240 (30%), Gaps = 25/240 (10%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
             S S     +  P     R I KL   P        T RGTL H ++  L     ++ T
Sbjct: 4   ALSPSRASDFMTCPMLYRFRVIDKLPSPPT-----AATARGTLVHAVLERLFDLPTSERT 58

Query: 829 PEINHLMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
            E    +          E                 W      +  ++   E+  +  +E 
Sbjct: 59  LEAAVGLVPQEWERIAAEEPEMLSLLAEHDGRTDEWFSGAGSLLETWFGLEDPTR--LEP 116

Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-QLSL 939
               +  +  I+  G+ L G+ DR+D+   G + + DYKTG +P      +     Q+  
Sbjct: 117 AERELYVETEID--GLVLRGYVDRLDVAPDGAMRVVDYKTGRSPS--ERFEGKALFQMKF 172

Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            A  L       +       L  + L     +    +++   + +   +     +     
Sbjct: 173 YALVLWR-----LRGEVPRLLQLVYLGNGEIVRYRPDEQDLLAVERKIKALWAAIERAAR 227


>gi|332715657|ref|YP_004443123.1| hypothetical protein AGROH133_09972 [Agrobacterium sp. H13-3]
 gi|325062342|gb|ADY66032.1| hypothetical protein AGROH133_09972 [Agrobacterium sp. H13-3]
          Length = 848

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/497 (13%), Positives = 139/497 (27%), Gaps = 50/497 (10%)

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC---IKANAIEWIDIITR 611
            ++     ++  L +  +       +    L  +  +I E       +     E       
Sbjct: 314  QILTAYPEHKALWDDIRASASSLAQLRFLLDRICDQITEGDKVRARLSVPPGEGSPDWEG 373

Query: 612  LIDGETVKPKIEKSS-----TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            ++ G  V              + +    ES       LI+    +G++P     NP    
Sbjct: 374  ILRGIQVMAPGSADPVRNLEGVSLWLAHESPWRPCQHLIISDFTDGLYPTRPRANPMFLD 433

Query: 667  V----MQSDLNLKTAEKYIGQA---AHDFEMANGTRHLI--YTRSLRENNIPTIASRWLQ 717
                 +++   L    +    A   AH       T   +         +      S  L 
Sbjct: 434  SEVTSIRAATGLALRGRAASLAQGLAHFDHQLQATSGSVTFLIPWRDLSGTKLQPSAGLS 493

Query: 718  RLLV------LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP---------KPFPP 762
             +               D  +     +      L     QP                   
Sbjct: 494  LIGRSIHKLDDASDLITDLSRLSPSDWPLMHHHLPPLPMQPDLPEALNFPGQDLLSLRRM 553

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE-LIK 821
             +   +  S S ++ L+  P A         + +     + D   +G + H++     +K
Sbjct: 554  DDGTVKPQSPSRLETLLVSPLAWLLAE-AGAEDMSWSADELDVMAKGNIAHDVFEHIFLK 612

Query: 822  KRINKNTPEINHLMKQIIDSHFEKEN--LPPHIDIIWRHLFHK-ISHSFLEH-EEKIQSS 877
             +   +   +   +    D    +    L      + R    + I  + L   +  +  +
Sbjct: 613  DQPVPDPETLTAAVPGAYDRALMRHAGYLRSPSWEMERKGLEREILAAALRWRDHLLALN 672

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY-KTGDNPKKETAQKLIDPQ 936
             + I   I       + GI L G AD I  L  G + + D+ K+G + +++  +   D Q
Sbjct: 673  AKIIGNEIWLAGE--AHGIQLQGKADAILELPDGTLLVVDHKKSGTSGRRKRMEAAWDLQ 730

Query: 937  LSLEAAALKAGSFSQIDCRKV-----ANLFYIRLKQKFKIDCITNDKKKYSADELSEK-- 989
              L    +   +  + D           L Y  +     +          +A ++  K  
Sbjct: 731  AGLYRDMISRPNRRENDGMDPLIGRKVALAYHLMNDGGFLTSGLTLSDGSTARDMGHKVS 790

Query: 990  --SLKNLIEIVTLLQNG 1004
              +++ L   +  L  G
Sbjct: 791  DSAVEKLTARLEELGAG 807


>gi|300766625|ref|ZP_07076542.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495725|gb|EFK30876.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 759

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 86/687 (12%), Positives = 186/687 (27%), Gaps = 107/687 (15%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLG 82
           +L   +        +NP    +V     T +A +E+R    ++ G+ +       + +  
Sbjct: 42  VLTHRVAYLIEEQGVNPW---NVLAITFTNKAAREMRERVGKLLGESAQEVW---VSTFH 95

Query: 83  DVVEEKFTADLL-LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            +       D+  + YN    ++       L + IL           +   +S    P S
Sbjct: 96  ALCVRILRRDIEQIGYNRAFTIAGTSEQRTLVKRIL----------TEQNIDSKKFDPRS 145

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
             +AI  AK      + ++T E   E   +                       +   L  
Sbjct: 146 ILSAISNAK------NDLQTPEMYKESAASPFESVVAD-----------VYLQYQRELAA 188

Query: 202 LNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             A       +  ++   +        +     I +     +  A   L++ +A+     
Sbjct: 189 DQAVDFDDLIMLTIQLFKQNPETLAWYQNKFHYIHVDEYQDTNNAQYTLVNLLADKYKNL 248

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V+   D       W     ++            +PQ     L       +  +     V
Sbjct: 249 CVV--GDADQSIYGWRGANMENILDFEK-----DYPQADTVMLEQNYRSTKTILSAANAV 301

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
            N    R                        K+    +    ++     +E +E   +  
Sbjct: 302 INNNSTRRPK---------------------KLWTENEPGDKISYYRGQSESDETHFVIA 340

Query: 377 ALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            ++ S+ +   +    A++      +R ++  L +  I   +  G           + S 
Sbjct: 341 KIQESMQQDKMDYGDFAILYRTNAQSRVMEESLVKANIPYTMVGGNKFYDRKEIRDVLSY 400

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSYDIMDLKSLV 492
           L       D M    +V  P    G       R   +      L    N      + +  
Sbjct: 401 LTLAVNDQDSMNFERVVNEPKRGIGQTSVEKLRLFADEAGYSMLEAASNVDMANGISARA 460

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
              +A                                 +  L   +   + T     I D
Sbjct: 461 KGALAKFAA----------------------------TMNELRAMREYLSVTDLTQEILD 492

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
            T                    +   EE  +++  F    +       ++ +++D +  L
Sbjct: 493 RTGYMKALKDAKATKSLEAQARIENIEEFLSVTKQFDDSYQPEDE---DSDKFVDFLADL 549

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA---KNPFLSRVMQ 669
                V    E+   + ++    ++ L F  + L G+ EG++P + A   ++        
Sbjct: 550 ALVSDVDNVEEEPQAVTLMTLHAAKGLEFPVVFLIGMEEGIFPLSRAMMDEDELEEERRL 609

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + + +  AEK +        M  G R 
Sbjct: 610 AYVGITRAEKKLYLTNAYSRMLYGRRQ 636


>gi|81429165|ref|YP_396166.1| ATP-dependent DNA helicase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610808|emb|CAI55859.1| ATP-dependent DNA helicase [Lactobacillus sakei subsp. sakei 23K]
          Length = 749

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 75/665 (11%), Positives = 182/665 (27%), Gaps = 106/665 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLL-LSYNLNPP 102
            +     T +A +E+R     + G+ +       + +   +       ++  + YN    
Sbjct: 56  RILAITFTNKAAREMRERVGNLLGEGAQDVW---VSTFHALCVRILRREIEQIGYNRAFT 112

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +++    L L R +      L    K   P++ L       NA+                
Sbjct: 113 IADPSEQLTLMRHV---CRDLNIDTKKYEPKAILGTISKAKNALQ--------------- 154

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                D   L N  +                 + +RL +  A       +  +R   E+ 
Sbjct: 155 --TPADYQGLANGPF-------EKMAAKCYTEYQKRLHQNQALDFDDLIMQTIRLFRENK 205

Query: 223 MKGTK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                       I +     +  A   L++ +A       V+   D       W      
Sbjct: 206 ETLAHYQEKFQYIHVDEYQDTNEAQYTLVNMLAEKYQNLCVV--GDADQSIYGWRGADIS 263

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +   +             L+      K +   +N +  R+       L     
Sbjct: 264 NIMNFEHDYPDAKS---------VMLEQNYRSTKTILEAANGVINRNTFRKPKELWTQNE 314

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITA 394
           + +                  +      +ER+E++ +   ++  + +N +     A++  
Sbjct: 315 EGQP-----------------ITYYRGQSERDESLFVITKIQEEMQKNHRKYGDFAVLYR 357

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++    +  +   +  G           + + L  +    D M+   +V  P 
Sbjct: 358 TNAQSRTIEEAFVKANMPYKMVGGHKFYDRKEIKDILAYLRLVVNAADSMSFERIVNSPK 417

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G                                      A Q         +SR + 
Sbjct: 418 RGIGPGTLEKL------------------GQFADDHQWSLLEAAQNAELSTIPARSRNTL 459

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
            D    +  +  + + +  +           G     +      +  +            
Sbjct: 460 IDFGNVIGDLAKMREFLN-VTDLTEQLLDKTGYKKALEVENTLESQTR------------ 506

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
               E  + L S+  +  E     + ++  ++D +  L     +    E++S + ++   
Sbjct: 507 ---LENIEELLSVTKQFDEHYEPEEEDSDLFVDFLAELSLVSDLDSVEEEASEVTMMTLH 563

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTA---KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
            ++ L F  + L G+ EG++P + A   ++        + + +  AE  +        M 
Sbjct: 564 AAKGLEFPVVFLMGMEEGIFPLSRALLEEDELEEERRLAYVGITRAESKLYLTNAYSRML 623

Query: 692 NGTRH 696
            G + 
Sbjct: 624 YGRQQ 628


>gi|91203329|emb|CAJ72968.1| strongly similar to ATP-dependent DNA helicase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 729

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 82/688 (11%), Positives = 172/688 (25%), Gaps = 122/688 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           ++     T +A  E+     + +  K      + +   +       D+ L          
Sbjct: 52  NILAITFTNKAANEMAERVKKFSSHKGMW---VSTFHKMCSRILRKDIELL--------G 100

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +   +   +      +  I+ DL  ++    P S  ++I  AKN              
Sbjct: 101 YSKDFTIYDTVDQLNR-IKSIMADLEIDTAHWKPRSIISSISNAKN-------------- 145

Query: 166 WEDLHALKNEKYGMWWLLAADFL-KIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                 + +E++          +     K +   L   NA       I  +         
Sbjct: 146 ----KLIDHERFAATASDIYHQMVAKIYKKYDTMLKSGNALDFDDLLIKTVELLKIRPDV 201

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I+I     +      +   +A       V    D       W     ++ 
Sbjct: 202 LSSYQERFKYILIDEYQDTNFVQYAISRLLAQKYKNICVT--GDPDQSIYGWRGADLRNI 259

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      +P   +  L                                L   +   
Sbjct: 260 MDFEK-----DYPDARVVLL---------------------EQNYRSTKNILLAASSVIQ 293

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397
           +N    + +I    +    +  I  +NE  EA  IA  +R          + AL      
Sbjct: 294 KNKYRKQKEIWTENEHGEKIKTIHCENEHSEAEEIAKTIRALRGNGIKYTEIALFYRTNA 353

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R +++ L   GI   I  G+          + + +       D  A+   +  P    
Sbjct: 354 QSRTLEIALRNAGIPYVIVGGVEFYRRKEIKDILAYIRLCVNPCDDSALERAINTP---- 409

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                   +  +  +K     R +T  N   +      ++ +  
Sbjct: 410 -------------------ARGIGTTTVKKIKEWAESRESTLFNAIGIVDAIHEVTGKSA 450

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                  + I+     L               I     +           E R       
Sbjct: 451 AAIKRFYELIMV----LRHMPETSVEKTLKSIIDKTGYIHFLRKSEEKESEDRIANVEEL 506

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                   +  +     G   +   I  +D +  L +             + ++    ++
Sbjct: 507 VNAAHEYDANHTDGSLQGFLEEVALISDLDTVEDLAE------------AVTLMTLHTAK 554

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + + G+ EG+ P + ++        +  L       Y+G            + L
Sbjct: 555 GLEFPVVFISGMEEGLLPHSESRISEEEIEEERRL------CYVGITR-------AMKRL 601

Query: 698 IYTRSLRE----NNIPTIASRWLQRLLV 721
             T + R       IP +ASR+L  +  
Sbjct: 602 FLTYTKRRMRYGQLIPCVASRFLDEIHA 629


>gi|262375019|ref|ZP_06068253.1| ATP-dependent DNA helicase PcrA [Acinetobacter lwoffii SH145]
 gi|262310032|gb|EEY91161.1| ATP-dependent DNA helicase PcrA [Acinetobacter lwoffii SH145]
          Length = 662

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/414 (12%), Positives = 111/414 (26%), Gaps = 60/414 (14%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            + I   T+RA  E+ +      G+++  L    +                      + +
Sbjct: 55  QIQILTFTRRAASEIVARVELALGEQAKGL-RASTFHTFCMYLLRRIPKAFGLEQFSIID 113

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
               L + RLI    +K             L  P    +    A+N    +         
Sbjct: 114 RDDQLMMFRLIRGRDDKKNPNH--------LPKPQELCDLYSFARNTRQKL--------- 156

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
                +L  EK    +L   D +    K +  R    +          +  A A+     
Sbjct: 157 -----SLALEKQMPEYLALKDQIAEIMKEYEARKQARSFLDYDDILAVVATALAQSEGLV 211

Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    +++     + P    L+  +    +   +    D       +     ++ +
Sbjct: 212 DYVASICRHMLVDEMQDTNPLQWALLEPL---KDRISLFCVGDDAQSIYGFRGADFENIH 268

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                   +          +  L+      + + ++SN +  +S +     L     +  
Sbjct: 269 HFKERVPDAQ---------IFKLEKNYRSTQEILDLSNWLLDQSEIKYDKRLEAYRGEGI 319

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA---LITADRN 397
                               +    NE +EA  IAI ++        K     ++     
Sbjct: 320 KP-----------------RMHIFPNEFDEAKWIAIDIKERHYLQGSKWGEHMVLVRSSF 362

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            AR ++       +      G+ L  T H   L S+L  +    D +A    + 
Sbjct: 363 AARHIEAACIAANVPYRFIGGMKLLETAHVKDLLSMLRVVANPLDDIAWMRFLT 416


>gi|332524352|ref|ZP_08400572.1| UvrD/REP helicase [Rubrivivax benzoatilyticus JA2]
 gi|332107681|gb|EGJ08905.1| UvrD/REP helicase [Rubrivivax benzoatilyticus JA2]
          Length = 675

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 81/705 (11%), Positives = 179/705 (25%), Gaps = 116/705 (16%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
             +       L P  +A++T    T +A  E+R    +I G ++     I +   +    
Sbjct: 39  HKIARLLQAGLEPRQIAAIT---FTNKAAAEMRERAKQIVGGRAAKDLAISTFHSLGVRM 95

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
              D                      L   +     D +  +  E+      + A +   
Sbjct: 96  LKTDGSRLG-----------------LKEQFSIFDSDDVLGVLREAGGCNDNAVARSWQW 138

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
             +L             W++     +               +  K + ERL    A    
Sbjct: 139 TISL-------------WKNQGLDSDAAARAAADEDQRVAAVVMKRYEERLAAFQAVDFD 185

Query: 209 GY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                  ++    AEA    + T   I++     +      L+  +             D
Sbjct: 186 DLISLPLKLLARDAEAREKWQSTFRHILVDEYQDTNAVQYELLKALVGEH--TPFTAVGD 243

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                  W   T ++      +                 L +   +              
Sbjct: 244 DDQSIYGWRGATIENLKRLPQDFP--------------RLKVIPLEQNY----------- 278

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
                      +    +N  I E K+ +       V L+E D+E  EA      ++    
Sbjct: 279 -RSTGNILRAANNVIAQNPKIYEKKLWSEFGDGEPVRLLECDSEEHEAERAVARIQALRG 337

Query: 384 ENKKKS----ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
            + + +    A++    + AR ++ +L +  I   +S G           L + L  +  
Sbjct: 338 ADARIAWADFAILYRANHQARILEQKLRQAQIPYKVSGGQSWFDRAEIKDLCAWLRLLVN 397

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
            +D  A    V  P                       +       +  L         + 
Sbjct: 398 PDDDPAFLRAVTTP-----------------------KRGIGHQTLASLGEFAGKWKVSL 434

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                 P  ++ L  +  +       ++          +  + +    L     T +   
Sbjct: 435 FEALFSPTLKTALKGKAIDSLHEFGRYVNALEERARHTRGGEEARKLMLEF--LTDIGYE 492

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
              +   D  +   + W                  G          +++   +    ++ 
Sbjct: 493 RHLHDGEDSEKIAASRWSNVVDFVDWI----ARRAGGDEDRPEQTVLEVAQTIAVIISLA 548

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
            + E    + +     S+ L +  ++L G+NEG+ P    +               T E+
Sbjct: 549 ERSEDQDVVTLSTLHASKGLEWPHVVLAGVNEGLLPFRAGEEEM------------TPER 596

Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-----ASRWLQRL 719
              +    +      R  +   +LR             SR++  +
Sbjct: 597 LEEERRLMYVGITRARRTLVVSTLRRRKKGRELVAAVPSRFIAEM 641


>gi|21233617|ref|NP_639534.1| exodeoxyribonuclease V gamma chain [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770582|ref|YP_245344.1| exodeoxyribonuclease V gamma chain [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21115484|gb|AAM43416.1| exodeoxyribonuclease V gamma chain [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575914|gb|AAY51324.1| exodeoxyribonuclease V gamma chain [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1134

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 106/945 (11%), Positives = 236/945 (24%), Gaps = 117/945 (12%)

Query: 32  ENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTA 91
           E  R       +L    + +P     + L+S      G  + +     + G+ V      
Sbjct: 26  EELRRPVPEQPVLQPEVVLIPQVAMRRWLQSTLAAEHGVAANL--EFLTPGEFVARALER 83

Query: 92  DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
           +L  + +     +   RL                    L P +             LA  
Sbjct: 84  NLGPADDDLDMATTQWRL-------YQTLQGELGSDAALAPLAGYLADGDALKPWALAGE 136

Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
           L  + +  +   + W            + W   AD     ++ W                
Sbjct: 137 LGSVFEKYQAWRRDW-----------LLRWESGADADDPQARLWRSI--AGGRQYRARRI 183

Query: 212 IALMRAEAEHLMKGT---KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +   A             +         P   R+++T A        LP        
Sbjct: 184 GQYLDRYARPDGPLPQGLPKRLFAFAILNVSPDVLRVLATQARVGTLHFYLPTPTQGYWG 243

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
            +      +      +        Q     LL        D   L      ++  + + +
Sbjct: 244 DLQTLWQRRREGGAVALFAE----QVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEIAA 299

Query: 329 KSFLPPDTSD--------------------MRNTDILENKIPNIQKCFSDVALIEADNER 368
            +                             R+   +   +P +      + +       
Sbjct: 300 YADPLDAGRRTLAEGGLGDSLLRRMQSDLFHRHAPAVPPVLPAVNLHDPSLQVHACHTRL 359

Query: 369 EEAISIAIALRMSLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDIS 416
            E   +   LR  LD+         ++ A+++ D +        +     +  G+   ++
Sbjct: 360 RELQVLHDQLRALLDDARFDPPLQPREIAVLSPDIDPYVPYLDAVFGGHGSDDGLPYALA 419

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG--FPEKYLSRAKNALELV 474
              PL++   + +  +LL           I  L+            E  L R +  L   
Sbjct: 420 DASPLASEPLADVFLTLLGLPISRFGLHEILDLLASAPIAEAAGLDEAGLERLRGWLHGA 479

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH-------I 527
             R   ++      ++   D    +     +    +  +E+D +               +
Sbjct: 480 GARWGLDAVHRRQHQAPGDDAYTWRFALDRLLLGHASGAEDDIDGVAPWPQLEGSALAAL 539

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
              +  L     ++ +    ++   W +  +  L+ +              E  +TL   
Sbjct: 540 DTLLRLLRVLDRHQAALAEAMTPVQWRECLLGLLEALIPAAPSAPRAQRALERLRTLIDQ 599

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
           F++             E +      + GE+       +  +     +  RLL F  + L 
Sbjct: 600 FARDAVRAEYAGNVPAEVVRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRAICLL 659

Query: 648 GLNEGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
           G+N+G +P+             L    +   +  T E         F  A    +L Y  
Sbjct: 660 GMNDGDFPRRDPAAGLNRLTAELGTERRRHGDRSTREDDRFLFLQLFASAQEVFYLSYLG 719

Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT------------------- 742
           +   +      S  +  LL        D                                
Sbjct: 720 ADARDGTVREPSVLVSELLGSAAQYHADPKAIDALVVRHPLQPFAAAAFGAVGEDGADPR 779

Query: 743 ----RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS---------EIKQLINDPYAVYARR 789
               R+           + +P  P  A       S         ++++L  DP   + R 
Sbjct: 780 RFSYRRQWRPAVDSLAGQRQPLAPWVAGALPADASVLPASVSIDDLRRLFADPAGQFLRH 839

Query: 790 ILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
            L +       +D D        RG   + +  ++ +  +  +   +   ++        
Sbjct: 840 RLGMRLPDPAGEDSDLEPLLAPTRGLEQYGLQQQVFEAALAGDADGLYERLRA---RALL 896

Query: 845 KENLPPHIDIIWRHL-FHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                    +  R       +  F +   +  +  +++ V I   
Sbjct: 897 PSGPLGRRQLDERLRQLRPYADVFRQWRGEAPAQSQRLQVEIDGT 941


>gi|187251475|ref|YP_001875957.1| hypothetical protein Emin_1068 [Elusimicrobium minutum Pei191]
 gi|186971635|gb|ACC98620.1| Putative RecB family exonuclease [Elusimicrobium minutum Pei191]
          Length = 411

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 88/276 (31%), Gaps = 40/276 (14%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI--KKRINK 826
            ++S+S++      P     R I K+   P +         G+  H  +  +   K+    
Sbjct: 21   SFSYSKMTLYRECPQKYKFRYIHKIPEAPKYYFA-----FGSAMHKALEFIYSVKQPPFP 75

Query: 827  NTPEINHLMKQIIDS-HFEKENLPPHIDIIW-RHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            +  +I         S  ++ +        +       +I  S+ +  +   S    + V 
Sbjct: 76   SLEQILDFFDADWRSTSYQDKGYASISKELEGYDEGRRILISYYQKHKD--SFFIPLAVE 133

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-QLSLEAAA 943
               +  ++   + L    DR+D   +G + ITDYKTG        Q+  +P QL +    
Sbjct: 134  --FRTTLDIDNLSLISIIDRVDYFGNGALAITDYKTGKT-----VQR--EPDQLYMYQKV 184

Query: 944  LKAGSF---------SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            ++              +    K+  L +  L     +D     +K+           +  
Sbjct: 185  MQNSPVLKNIINEKEGKETEVKIEKLSFYHLPSLKVMDFEPAPQKEIDV------FWEG- 237

Query: 995  IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
               V    +  +    +   SE      +Y  +  V
Sbjct: 238  ---VLKTADEIRGKNFNPDPSESKCRWCDYKAMCPV 270


>gi|260102795|ref|ZP_05753032.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus DSM
           20075]
 gi|260083399|gb|EEW67519.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus DSM
           20075]
          Length = 748

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 82/691 (11%), Positives = 184/691 (26%), Gaps = 120/691 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLL-LSYNLNPP 102
           ++     T +A  E+R    ++ G  +       + +   +       D   + Y+ N  
Sbjct: 56  NILAITFTNKAANEMREREQKLLGPAAQNIW---MSTFHALCVRILRRDADKIGYSHNFS 112

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +++    L L + I            DL     +  P    +AI   KN  D++D     
Sbjct: 113 IADSAEQLTLVKHIEK----------DLNINPKMYDPRGILSAISNGKN--DLLD----- 155

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RA 217
               +   A  +  +               + +  RL            +  +       
Sbjct: 156 ---PKAFAASASSPFD-------KMAAKIYEEYQRRLRRDQIMDFDDLIMQTLVLFKKDP 205

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           E  H  +     I++     +  A   L   +A       V+   D       W     +
Sbjct: 206 ETLHYYQNKFRYILVDEYQDTNQAQYELCHALAAQYKNICVV--GDADQSIYGWRGANME 263

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +     S                        D K+ G  + ++              ++ 
Sbjct: 264 NIMNFES------------------------DYKKDGVKTVKLEQNYRSTGHILSAANSV 299

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALITA 394
              N +     +   Q   + V   +A +  +EA  I   ++  ++      K  A++  
Sbjct: 300 IKNNQNRKAKNLWTDQGEGAKVTYYQAQSGDDEAHYIISKIKEEVEAKKRTYKDFAILYR 359

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R V+    +  I   I  G           + + L  +    D M++  ++  P 
Sbjct: 360 TNAQSRTVEEAFVKSNIPYQIVGGHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINVPK 419

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G        A                                 ++       +R ++
Sbjct: 420 RGIGAATVDKLLAFADENHYN--------------------ALDAMDHVAESPINTRTAK 459

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           +  +    L D I    T  VT  T K  +    + +   + T+     +          
Sbjct: 460 KLSDFGTKLRDAIAYAQTHGVTGLTEKILSDFEYTDALRAENTIEAETRL---------- 509

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
               E      S+  +  +     +  +    D +  +          E  + + ++   
Sbjct: 510 ----ENLDEFLSVTKRFDDHYEPDEDESNPLSDFLAEVSLLSDQDDLDEDDNQVALMTLH 565

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ +G++P   A              +    +   +    +      
Sbjct: 566 AAKGLEFPVVFLVGMEDGLFPLQRA--------------MMDDNELEEERRLAYVGITRA 611

Query: 695 -RHLIYTRSLRE----NNIPTIASRWLQRLL 720
            + L  T +              SR+L  + 
Sbjct: 612 KKELYLTNAYSRMMYGRMQNNPPSRFLDEID 642


>gi|254194688|ref|ZP_04901119.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei S13]
 gi|254298751|ref|ZP_04966202.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 406e]
 gi|157808603|gb|EDO85773.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 406e]
 gi|169651438|gb|EDS84131.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei S13]
          Length = 733

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 79/711 (11%), Positives = 174/711 (24%), Gaps = 112/711 (15%)

Query: 34  FRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP------------IIKSL 81
                  P  +A+VT    T +A  E+R    ++   K+   P             + + 
Sbjct: 80  IEAKGFEPRHIAAVT---FTNKAAAEMRERVGKLLEGKTLTTPGKEGRKVPVNQLTVCTF 136

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             +  +    +                          +     D    +  E   +    
Sbjct: 137 HSLGVQILRQEAEHVGLKP-----------------QFSIMDSDDCFGMIQEQIGTTDK- 178

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 L + +  II + +      E+  A+           A        + +   L  
Sbjct: 179 -----GLIRKIQTIISLWKNGLVAPEE--AMTIAANEDEHQAAL-----VYRNYVATLHA 226

Query: 202 LNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             A              A +       +     ++I     +      L+  +A     A
Sbjct: 227 YQAVDFDDLIRLPTELFARNEPVRDRWQNRLRYLLIDEYQDTNACQYELLKLLAG--PRA 284

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                 D       W   T ++      +              +  L+       R+   
Sbjct: 285 AFTAVGDDDQAIYGWRGATLENLAQLGKDFP---------KLHVIKLEQNYRSTVRILTA 335

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +N +   +  + +  L  +                       + +   ++E  EA S+  
Sbjct: 336 ANNVIANNPKLFEKKLWSEH-----------------GMGDSITVTPCNDEEHEAESVVF 378

Query: 377 ALRMS---LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            L           +  A++      AR  +  L R  I   +S G           L + 
Sbjct: 379 RLSAHKFERRTQFRDYAILYRGNFQARVFEQVLRRERIPYVLSGGQSFFDKAEIKDLCAY 438

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L  I   +D  A    V  P    G        A      V+L        I       L
Sbjct: 439 LRLIANADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGI----EARL 494

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                +         Q      DKE A +++D +++ I          +         + 
Sbjct: 495 SARQVEPLRIFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNV 554

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +      +     E             +      ++       +       + +I  + 
Sbjct: 555 LEFLEWLKRKGTKPE------------AEQAVDGEAEGFHNADGLADTGKNLLGLIQTVA 602

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               ++ K E    + +     S+ L +  + L G+ EG+ P +   +            
Sbjct: 603 LMSMLEGKEEDPDAVRLSTVHASKGLEYPHVFLVGVEEGIMPHSGGSDD----------G 652

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA-----SRWLQRL 719
               E+   +    +      +  ++    ++            SR++  +
Sbjct: 653 PIDDERIEEERRLMYVAITRAQRSLHLNWCKKRKRARETIVCEQSRFIAEM 703


>gi|21245049|ref|NP_644631.1| exodeoxyribonuclease V subunit gamma [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21110780|gb|AAM39167.1| exodeoxyribonuclease V gamma chain [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1134

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 105/960 (10%), Positives = 235/960 (24%), Gaps = 126/960 (13%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
            E  R  P  PLL   V + +P     + L+S      G  + +     + G+ V     
Sbjct: 26  QELRRPMPGQPLLQPEV-VLIPQVAMRRWLQSTLAAEHGVAANL--EFLTPGEFVARALE 82

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
            +L  + +     +   RL                    L P +             LA 
Sbjct: 83  RNLGAADDDLDMATTQWRL-------YAALQSDLGSDAALAPLAGYLSDGDALKPWALAG 135

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            L  + +  +   + W            + W   AD     ++ W               
Sbjct: 136 ELGSVFEKYQAWRRDW-----------LLRWEAGADPDDPQARLWRSIAA--GRQYRARR 182

Query: 211 QIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
               +           +G    +         P   R+++T A        LP       
Sbjct: 183 IGQYLDRYTRADGPLPQGLPPRVFAFAILNISPDVLRVLATQARVGTLHFYLPTPTQGYW 242

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
             +      +  +            Q     LL        D   L      ++  + + 
Sbjct: 243 GDLQTLRQRRREDGAVQLFAE----QVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEIA 298

Query: 328 SKSFLPPDTSD--------------------MRNTDILENKIPNIQKCFSDVALIEADNE 367
           + +                             R     + ++P +      + +      
Sbjct: 299 AYADPLDSGRRTLADGGLGDSLLRRMQSDLFHRRGPAADARLPAVNLHDPSLQVHACHTR 358

Query: 368 REEAISIAIALRMSLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDI 415
             E   +   LR  LD+         ++ A+++ + +        +         +   +
Sbjct: 359 LRELQVLHDQLRALLDDARFDPPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYAL 418

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY--------LSRA 467
           +   PL++   + +  +LL           I  L+                        A
Sbjct: 419 ADASPLASEPLAEVFLALLGLPIARFGLHEILDLLASAPIAEAAGLDEAGLERLRNWLHA 478

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV-LLVDH 526
             A   +     +      D        +            +               +  
Sbjct: 479 AGARWGLDAAHRRQHQAPGDDAYTWRFALDRLLLGHASGADEDIDGVAPWPQLEGSALAA 538

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           +   +  L   + ++ +    ++  +W +  +  L+ +              +  +TL  
Sbjct: 539 LDTLLRLLRVLERHQAALADAMTPVEWRERLLGLLEALIPATPTAPRAQRALDRLRTLID 598

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            F++             E +      + G++       +  +     +  RLL F  + L
Sbjct: 599 QFARDAVRAEYAGKVPAEVVRAHFAAVLGDSDTRAPLLTGGISFGRMVPMRLLPFRVICL 658

Query: 647 GGLNEGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
            G+N+G +P+             L    +   +  T E         F  A    +L Y 
Sbjct: 659 LGMNDGDFPRRDPAAGLNRLTAELGTERRRHGDRSTREDDRFLFLQLFASAQEVFYLSYL 718

Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFD----------------------------NLK 732
            +   +      S  +  LL                                        
Sbjct: 719 GADARDGSVREPSVLVSELLASAAQYHAASNALDTLVVRHPLQPFAAAAFGALGDDGADP 778

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS----EIKQLINDPYAVYAR 788
           +R      W   +D    Q     P     L A+      S     +++L+ DP   + R
Sbjct: 779 RRFSYRRQWRPAVDSLVGQRQPLAPWVAGALPAEAIALPASMSIDALRRLLTDPAGQFLR 838

Query: 789 RILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
             L +       +D D        RG   + +  ++ +  +  +T  +   ++       
Sbjct: 839 HRLGMRLPDPAGEDSDLEPLLAPTRGLDHYGLQQQVFEAALAGDTEGLYERLRA---RAL 895

Query: 844 EKENLPPHIDIIWR-HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                     +  R       + +F +   +  +   +        + ++   I L G  
Sbjct: 896 LPSGPLGRRQLDERVAQLRPYADAFRQWRGESPAQSRR--------LQVQIGEIELHGRV 947


>gi|325273939|ref|ZP_08140102.1| DNA-dependent helicase II [Pseudomonas sp. TJI-51]
 gi|324100910|gb|EGB98593.1| DNA-dependent helicase II [Pseudomonas sp. TJI-51]
          Length = 728

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/696 (8%), Positives = 168/696 (24%), Gaps = 123/696 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+R    ++ G     +  + +   +      A                  
Sbjct: 63  VTFTNKAAAEMRQRIEQLLGINPAGM-WVGTFHGLAHRLLRAHWQE-------------- 107

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
              ARL+  ++    D  + L     +   +      W A+     I+  + E  + + +
Sbjct: 108 ---ARLVQNFQILDSDDQQRLIKR--VMRELGLDEQKWPARQAQWFINGQKDEGLRPQHI 162

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG---- 225
            A  +        L    ++     + +              +  +    +H        
Sbjct: 163 QAGGD--------LFLATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPGLLEHYQ 214

Query: 226 -TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                +++     +       +  +A    GA ++   D       W     ++ +  ++
Sbjct: 215 RRFQHVLVDEFQDTNAVQYAWLRLLAR--GGASLMAVGDDDQSIYGWRGAKIENIHQYTA 272

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
           +   +                              +              +     N+  
Sbjct: 273 DFPDAEMI--------------------------RLEQNYRSTGGILKAANALIANNSGR 306

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRV 402
           L  ++         + L  A NE +EA  +   +   + +   +   A++      +R +
Sbjct: 307 LGKELWTDLGEGEPLTLYAAYNEHDEARYVVETIEGLIKQGNARNDIAILYRSNAQSRVL 366

Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
           +  L R  +   I  G             + L  I    +  A+  ++  P         
Sbjct: 367 EEALLRERVPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVP--------- 417

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                                     + +    +   + +          +      A  
Sbjct: 418 -------------------------PRGIGEKTVEAIREHARHSQLSMWGAMCQLIAAKA 452

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
           L       +   +       +   ++ +             +              E+G+
Sbjct: 453 LKGRAASALGAFIELIEGLAAKVADMPL------HTMTQTTIEQSGLITYHQEEKGEKGQ 506

Query: 583 TLSSLFSKIIETGS-----CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                  +++            A+       +             E   ++ ++    ++
Sbjct: 507 ARVENLEELVSAARNFESTEEDADLSPLSAFLGHASLEAGDSQADEHEDSIQLMTLHSAK 566

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RH 696
            L F  + L G+ EG++P                ++L+   +   +    +       R 
Sbjct: 567 GLEFPYVFLVGMEEGLFP--------------HKMSLEEPGRLEEERRLAYVGITRAMRQ 612

Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
           L+ T +       +     + R +          ++
Sbjct: 613 LVMTYAETRRLYGSETYNKVSRFVREIPPGLVQEVR 648


>gi|126738527|ref|ZP_01754232.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            SK209-2-6]
 gi|126720326|gb|EBA17032.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            SK209-2-6]
          Length = 1126

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 86/884 (9%), Positives = 199/884 (22%), Gaps = 113/884 (12%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE--TEEKKWEDLH 170
            A  +    +     +      +P S  I       L +    ++D +E      +     
Sbjct: 265  APALADLAHLESIFLTGASAAAPFSAKIGKFPTKKLREANLALMDRVEPLMRRVEDARAK 324

Query: 171  ALKNEKYGMWW---LLAADFLKIASKY--WTERLVELNASSPVGYQIA--LMRAEAEHLM 223
             L        W     A  FL    +       L   +        +    + A   + +
Sbjct: 325  RLALTALRKSWELHQFAQAFLPEYERRKQLRGWLDFDDLILKARQLLNDPAVAAWVLYRL 384

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTI 274
             G    I++  +  + P    ++  +A                +    D       +   
Sbjct: 385  DGGIDHILVDEAQDTSPVQWDVIEKLAQEFTAGEGARSGVERTIFVVGDKKQSIYSFQGA 444

Query: 275  TEKSTNITSSNTT---YSTHPQYSLAKLLDFLD----IKREDVKRLGNVSNEMYGRSMVI 327
               + +            T      A L         I R             + R  + 
Sbjct: 445  DPDAFDRMQREFGNRLAETGAGLQNAALEFSFRSSAAILRLVDLVFQGQDAAGFPRDALH 504

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDV-ALIEADNEREEAISIAIALRMSLDEN- 385
                +           + +            V    +  +    A  IA  ++  +D+  
Sbjct: 505  RAFKVDLPGRVDLWPVVEKPDDDEEVDWTDPVDRPGKRHHTVILAERIAQQIKDMIDQKV 564

Query: 386  -----------------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
                                        L+     L   +     +  + I  +  + + 
Sbjct: 565  TLPIDGPKGPDGQMTFERRPVHAGDFLILVQRRSELFSEIIRACKKADLPIAGADRLKVG 624

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
              L    + SLL+ +    D +A+A  +K PL  +     +    +   +       +  
Sbjct: 625  AELAVKDIASLLSFLSTPEDSLALAEALKSPLFGWSEQMLFDLAHRRDGKQHLWEALRKR 684

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                     +LD +  Q +         R+    K    LL     +    +    +   
Sbjct: 685  KSEFPQTMGILDDLRGQTDFLRPFDLIERILTRHKGRQKLLGRLGPEAEDGINALLSQAL 744

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
            S                               +W + +   +             +  + 
Sbjct: 745  SYER------------------SDIPSLTGFLVWMQTDDLEIKRQMGAAEGMVRVMSVHG 786

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             + ++    ++     +                    + + ++  G      PK    + 
Sbjct: 787  SKGLEAPIVILPDTAKRNAP----------------RDAEIMVAEGTPLWKLPKEQMPDL 830

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
             LS    +       ++   +    +         +   +  + +       W QR+   
Sbjct: 831  LLSARNTAQ-----EKQQNERLRLLYVALTRAEKWLIVGAAGDLSKEGDT--WYQRVEAA 883

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
              +    + +  G   L               +R     P           +        
Sbjct: 884  LKSSGAVDHEHPGGTGLRLEHGDWDALPYVEKERSVSALPSLPDVFLQKAPDYLAPAPAV 943

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                     K         + +   RGT  H ++  L      +       L+  + D  
Sbjct: 944  SPSDLG-GAKALPGDRGLDEEEAKARGTRLHLLLEHLPLLPPEQWQERATALLSGVHDQ- 1001

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
              KE L     ++       +                     +     +      L G  
Sbjct: 1002 --KELLDEASAVLLARDLEHV-------------FAPDSLAEVAITADLGQH--KLYGII 1044

Query: 903  DRIDLLKSGFVDITDYKTG--DNPKKETAQKLIDPQLSLEAAAL 944
            DR+ +    +V   D+K+              +  Q+   A AL
Sbjct: 1045 DRLVITSD-YVLAVDFKSNATTPKSAGDCPDGLLRQMGAYAHAL 1087


>gi|299822108|ref|ZP_07053994.1| ATP-dependent nuclease subunit A [Listeria grayi DSM 20601]
 gi|299815637|gb|EFI82875.1| ATP-dependent nuclease subunit A [Listeria grayi DSM 20601]
          Length = 1240

 Score = 83.0 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 102/1011 (10%), Positives = 251/1011 (24%), Gaps = 153/1011 (15%)

Query: 56   AIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELA 113
            A++ELR+   F E  G     LP+I++   +  E+   D  L +       +  +   L 
Sbjct: 237  ALEELRTALKFAEEPGGPDVYLPLIEN-EKLQLEQLLDDYPLDWEAKKEAISSVKFGRLP 295

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
             +          I +           +      W  ++  + +  +   +   E L  L 
Sbjct: 296  TIKNKENYDESLIEQTKQARDGAKKQLKAITEEWFQRDAGNYLADLAKMKPDIELLTELV 355

Query: 174  NEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
             E    +                      L E   ++          +E     +     
Sbjct: 356  EEFAADFLAEKQRRGVLDFNDLEHLALAILGEKTETTS------YEPSEIALEYRHKFKE 409

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            ++I     +      ++S +      A  +    D       +                 
Sbjct: 410  VLIDEYQDTNMVQETILSLLTTPSEAAGNLFMVGDVKQSIYRFRLAEPTLFLDKYKRYRV 469

Query: 289  ST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG---RSMVISKSFLPPDTSD 338
                         +     + L       K+L +           + ++  +  P     
Sbjct: 470  DGENTGIRIDLSKNFRSRQNVLTTTNFIFKQLMDTQIAEIDYDEAAELVLGAAFPETEER 529

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-------------- 384
             +    L +     ++     +  E    + EA+ IA  ++  + E              
Sbjct: 530  YQPEIALVDMKQEERESEETDSPQELQKNQAEAMLIARKIKKMITEKFQIYDKKMQQYRP 589

Query: 385  -NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
               +   L++     A  ++  +    I    ++           I+ ++L  I      
Sbjct: 590  IQYRDIVLLSRAMTSATDIEEAMKAHDIPFYANSNTGYFEATEIRIMLAVLKVIDNPYQD 649

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            + +A +++ P+           RA                  +  ++  +DR   Q    
Sbjct: 650  IPLAAVLRSPILGVSEEILGQIRAAKPKGYFYDALLLYQQTTISPEADRIDRFLKQLEL- 708

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                W+   + E     +  +         +      K       ++ D +         
Sbjct: 709  ----WRDLANRESLPKLIAQIYEETHYYDFVGGLPGGKQRQANLRALYDRSSQYEKTAYR 764

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                  R +  +    +    +    +  +    +  +A + ++    ++ G + +  + 
Sbjct: 765  GLFRFIRFIERMRVRGDDMGTAKTLGEKEDVVRMMTIHASKGLEFPVVILAGTSRRFNMR 824

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                          LL+ +       N+             +   +        E    +
Sbjct: 825  --------DIYSKYLLDKEFGFSARYNDVDKRIVYPTIMQQAIKQKKY-----RETIAEE 871

Query: 684  AAHDFEMANGTRHLIYTRSL---------RENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
                +         +              +     +     L   + L G  + + +   
Sbjct: 872  MRVLYVALTRAEQKLIITGTVADWEKTKTKWATQSSHTGWILPAGVRLQGKTYLEWIGSA 931

Query: 735  GQCYLDWTRKLD----------------------------------------YTTKQPHY 754
               + ++ + LD                                           K    
Sbjct: 932  FARHPEFAKLLDAGQVAALPIDMPIGLEIVASEQLTNPAEAKTSKPVYLDNIQAGKTVPI 991

Query: 755  KRPK------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK-------LDF 795
            + P+            P           S +EIK+  +   +    +I++          
Sbjct: 992  ESPEKESINSYLEFIYPNQVETQIRAKQSVTEIKRQFSVQDSWSDTKIVEGIQKVSLDRP 1051

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI- 854
                +K    T++GT  H ++  L       +       +   ++    KE L P     
Sbjct: 1052 KFLQRKGLSATEKGTAMHTVMQSLPLSHEPDDKE-----LTDFLEELVAKEILSPEQKES 1106

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES----------IGIHLTGFADR 904
            I          + L        +++++   IP    + +            + + G  D 
Sbjct: 1107 ITYSEIQAFFRTKLGRLI--NENLQQVEREIPFSYHLPASVIYPEAETEERVLIQGVIDC 1164

Query: 905  IDLLKSGFVDITDYKTGDN----PKKETAQKL-----IDPQLSLEAAALKA 946
            +     G V + DYKT       P      +       + Q+ L   A++A
Sbjct: 1165 MLEEADG-VTLIDYKTDRIGSHFPNGWLEAEPVLKKRYEVQMHLYQKAVEA 1214


>gi|161507067|ref|YP_001577021.1| ATP-dependent helicase [Lactobacillus helveticus DPC 4571]
 gi|160348056|gb|ABX26730.1| ATP-dependent helicase [Lactobacillus helveticus DPC 4571]
          Length = 748

 Score = 83.0 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 82/691 (11%), Positives = 184/691 (26%), Gaps = 120/691 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLL-LSYNLNPP 102
           ++     T +A  E+R    ++ G  +       + +   +       D   + Y+ N  
Sbjct: 56  NILAITFTNKAANEMREREQKLLGPAAQNIW---MSTFHALCVRILRRDADKIGYSHNFS 112

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +++    L L + I            DL     +  P    +AI   KN  D++D     
Sbjct: 113 IADSAEQLTLVKHIEK----------DLNINPKMYDPRGILSAISNGKN--DLLD----- 155

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RA 217
               +   A  +  +               + +  RL            +  +       
Sbjct: 156 ---PKAFAASASSPFD-------KMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKDP 205

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           E  H  +     I++     +  A   L   +A       V+   D       W     +
Sbjct: 206 ETLHYYQNKFRYILVDEYQDTNQAQYELCHALAAQYKNICVV--GDADQSIYGWRGANME 263

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +     S                        D K+ G  + ++              ++ 
Sbjct: 264 NIMNFES------------------------DYKKDGVKTVKLEQNYRSTGHILSAANSV 299

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALITA 394
              N +     +   Q   + V   +A +  +EA  I   ++  ++      K  A++  
Sbjct: 300 IKNNQNRKAKNLWTDQGEGAKVTYYQAQSGDDEAHYIISKIKEEVEAKKRTYKDFAILYR 359

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R V+    +  I   I  G           + + L  +    D M++  ++  P 
Sbjct: 360 TNAQSRTVEEAFVKSNIPYQIVGGHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINVPK 419

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G        A                                 ++       +R ++
Sbjct: 420 RGIGAATVDKLLAFADENHYN--------------------ALDAMDHVAESPINTRTAK 459

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           +  +    L D I    T  VT  T K  +    + +   + T+     +          
Sbjct: 460 KLSDFGTKLRDAIAYAQTHGVTGLTEKILSDFEYTDALRAENTIEAETRL---------- 509

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
               E      S+  +  +     +  +    D +  +          E  + + ++   
Sbjct: 510 ----ENLDEFLSVTKRFDDHYEPDEDESNPLSDFLAEVSLLSDQDDLDEDDNQVALMTLH 565

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ +G++P   A              +    +   +    +      
Sbjct: 566 AAKGLEFPVVFLVGMEDGLFPLQRA--------------MMDDNELEEERRLAYVGITRA 611

Query: 695 -RHLIYTRSLRE----NNIPTIASRWLQRLL 720
            + L  T +              SR+L  + 
Sbjct: 612 KKELYLTNAYSRMMYGRMQNNPPSRFLDEID 642


>gi|83643631|ref|YP_432066.1| DNA-dependent helicase II [Hahella chejuensis KCTC 2396]
 gi|83631674|gb|ABC27641.1| Superfamily I DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 721

 Score = 83.0 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 70/700 (10%), Positives = 172/700 (24%), Gaps = 130/700 (18%)

Query: 50  YVPTKRAIQELRSEFIE--ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A +E+R           +   L    +   +      A    +        + +
Sbjct: 60  VTFTNKAAREMRERVESLLHIPTRGMWL---GTFHSLAHRLLRAHWREAGLPENFQVIDS 116

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +   L R+I                            + W A+     I+  + E  +
Sbjct: 117 DDQQRMLKRVIREL---------------------GLDESKWPARQAQYFINSQKDEGLR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            +++     E     W      +    + + E   +            L+R+    L K 
Sbjct: 156 PDNI-----EPGSDAWRQT---MNKIYQRYDEYCRQSGLVDFGE---LLLRSHELWLQKP 204

Query: 226 --------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                       I++     +       +  +A       V+   D       W     +
Sbjct: 205 DLLRHYQQRFQHILVDEFQDTNTIQYAWLRVLAGDRVPMTVV--GDDDQSIYGWRGAKIE 262

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +     ++                                  +              +  
Sbjct: 263 NIQRFQNDFG--------------------------EAALVRLEQNYRSTQTILRAANHV 296

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--SALITAD 395
              N   L  ++   Q     + +  A NE++EA  I  +++  +++ + +   AL+   
Sbjct: 297 IAHNPSRLGKQLWTDQGEGEAIDVYAAFNEQDEANYIVESVQSWVNQGRSRSEVALLYRS 356

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L R G+   I  G+     L      + L      +D  A   +V  P  
Sbjct: 357 NVQSRVLEEALIRHGVPYRIYGGLRFYDRLEVKNAVAYLRLAHFADDDAAFERVVNIPSR 416

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G       R                           D    ++ +       +  +  
Sbjct: 417 GVGAKSLETLR---------------------------DAARERRGSLWRTSVAAVSAGL 449

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            K  A   + H ++ +  L  +    +       + + + +              +  NL
Sbjct: 450 IKGKAGAGLKHFIEIVENLREFAKENSLQDLTKHMLEVSGILEHHANEKGDKAEARKENL 509

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                                          + +T+       +        + ++    
Sbjct: 510 LELVNAVAEYETLDNE-----------SPLAEFLTQAALDAGERQAEVDQDAVQLMTLHS 558

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + L G+ E ++P +              + L+ A +   +    +       
Sbjct: 559 AKGLEFPLVFLTGMEEELFPHS--------------MALEEAGRLEEERRLCYVGITRAM 604

Query: 696 H-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
             L+ T +             + R +     +    ++ R
Sbjct: 605 EKLVLTFAESRRLYGQDKYHSISRFVREIPNELLREVRLR 644


>gi|310766136|gb|ADP11086.1| DNA helicase II [Erwinia sp. Ejp617]
          Length = 720

 Score = 83.0 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 78/710 (10%), Positives = 175/710 (24%), Gaps = 120/710 (16%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLG 82
           +L   +      +  +P  + +VT    T +A  E+R    ++ G          I +  
Sbjct: 38  VLVHRIAWLMGVENCSPHSIMAVT---FTNKAAAEMRHRIEQLIGTSQGGMW---IGTFH 91

Query: 83  DVVEEKFTADLLLSYNLNPP---VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            +      A  L + NL      + +  +L  L RLI                       
Sbjct: 92  GLAHRLLRAHHLDA-NLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPARQGMWYINGK- 149

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
                               + E  + + + +  N     W            + + E  
Sbjct: 150 --------------------KDEGLRPKHIESYGNPIEQTWLR--------IYQAYQEAC 181

Query: 200 VELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
                       +                +     I++     +       +  +A    
Sbjct: 182 DRAGLVDFAELLLRAHELWLNKPHILNHYRERFTNILVDEFQDTNNIQYAWIRMLAGDTG 241

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             I++   D       W     ++      +   +                         
Sbjct: 242 KVIIV--GDDDQSIYGWRGAQVENIQRFLQDFPAAE------------------------ 275

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
             +  +       +      +T    N   L  ++         +A+  A NE +EA  +
Sbjct: 276 --TIRLEQNYRSTNNILKAANTLIANNNGRLGKELWTEDSDGEPIAIYCAFNELDEARFV 333

Query: 375 AIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
              +++ ++        A++      +R ++  L +  +   I  G+            +
Sbjct: 334 VNRIKVWMENGGALNDCAILYRSNAQSRVLEEALLQTSMPYRIYGGMRFFERQEIKDSLA 393

Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            L  I   ND  A   +V  P    G     + R                          
Sbjct: 394 YLRLISNRNDDAAFERVVNTPTRGIGDRTLDVVR-------------------------- 427

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                + +         +R   ++K LA      + +    + +     +    ++    
Sbjct: 428 ----QSARERQLTLWQTARALLQEKALAGRAASALQRFTELVDSLAQETSDMPLHVQTDR 483

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
             K +   L        +    +   EE    +  +S   E    +   A      +   
Sbjct: 484 VIKDSGLWLMYEQEKGEKGQARIENLEELVNATRQYSYQDEDEDLMPLQAFLSHAALEAG 543

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                          + ++    ++ L F  + + G+ E           F S++   + 
Sbjct: 544 EGQADKWQ-----DAVQLMTMHAAKGLEFMQVFIVGMEE---------GMFPSQMSLEEG 589

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
                E+ +        M   T     TR L    +    SR++  L V 
Sbjct: 590 GRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPVE 639


>gi|319947691|ref|ZP_08021905.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
 gi|319438641|gb|EFV93547.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
          Length = 824

 Score = 83.0 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 78/702 (11%), Positives = 176/702 (25%), Gaps = 70/702 (9%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R     + G  +  +  + +   +      A   L    N    
Sbjct: 67  GQILAITFTNKAAAEMRERVAALVGPHAERM-WVATFHSICVRILRAQSALLGTRN---- 121

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                         +     D  + L         +         + LA  I   + E +
Sbjct: 122 ------------SNFTIYDSDDSRRLLGMIAKEQQLEVKKFTP--RMLASAISNHKNELR 167

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
              +      E         A                 +    +G  +AL+RA  E    
Sbjct: 168 DPAEAMDRALEDSDRTAQTVAAVFTEYQARLQAA-NAFDFDDLIGETVALLRAHPEVAAY 226

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANHPNG---------AIVLPGLDCHIPTAIWNT 273
            +     +++     +  A   L+ T+     G         A +    D       +  
Sbjct: 227 YRRRFRHVMVDEYQDTNHAQYVLVRTLVGGAEGDDDEVGVPPAELCVVGDADQSIYAFRG 286

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
            T ++      +   +             L+      + + + +N +  R+    +  L 
Sbjct: 287 ATIRNIEDFEHDYPDARSIL---------LEQNYRSTQTILSAANAVIARNAGRREKNLW 337

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSA 390
                              +     +    ADNE +EA  IA     L  S + +    A
Sbjct: 338 T-----------------AEGAGELLVGYVADNEHDEARFIAGEIDRLVDSGEASYSDVA 380

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           +     N +R ++    R G+   +  G           + + L  +   +D +AI  ++
Sbjct: 381 VFYRTNNSSRVIEDVFVRLGLPYKVVGGTRFYERKEVRDVVAYLKVLNNPDDAVAIRRIL 440

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL-VLDRIATQKNNTHVPHWQ 509
             P    G   +           +             +  L      A       +   +
Sbjct: 441 NTPRRGIGDRAEACVVVHAEQRGIGFAQALRDASEGKVSLLPTRSVKAIAGFVEMLDDLR 500

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
            RL  +D          +   +  ++     +     +    D  +L           E 
Sbjct: 501 GRLDGDDHAGGHDSAPDVGALVEAVLERTGYRAELEASNDPQDAARLDNLNELVGVGREF 560

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                L      +          +    +         +    +  +  +   +    + 
Sbjct: 561 SSEAALQRSAREQGFVEEADADADLDEGLAEPGSLAAFLERVSLVADADEIPDDDQGQVT 620

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
           ++    ++ L F  + L G+ +G++P   A         +  L      +   +      
Sbjct: 621 LMTLHTAKGLEFPVVFLIGMEDGLFPHMRALGDPAELSEERRLAYVGITRARRRLYLTRA 680

Query: 690 MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
           M          RS     +    SR+L+ +         +  
Sbjct: 681 MM---------RSSWGQPMTNPGSRFLEEIPSEAIEWQREEP 713


>gi|158521184|ref|YP_001529054.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
 gi|158510010|gb|ABW66977.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
          Length = 1132

 Score = 83.0 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 56/701 (7%), Positives = 146/701 (20%), Gaps = 106/701 (15%)

Query: 47   VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
            V     T RA +E+      + G  +  LP + +                      +   
Sbjct: 520  VLAITFTNRAAREMADRLAAMLGGNTD-LPFVSTFHGFCLGLLREQGGFD---AVVLDEY 575

Query: 107  QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
             R +    ++        D +                        L D+I   +      
Sbjct: 576  DRRILAKTVLKRAAAGKADGLPGP-------------------DRLLDMIASAKQAMLGP 616

Query: 167  EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EH 221
             D  +    +         D L      +   L E +           +           
Sbjct: 617  GDDLSGVARETAP------DLLATLYGDYQALLAENSGCDYEDLICRAVDLLEGHKDVRQ 670

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
              +     I +        A  RL+  +A  P G  +    D       +   +      
Sbjct: 671  TAQQRFVYIFVDEYQDVNHAQYRLIQALA--PAGGNICVIGDPDQAIYGFRGASAAYFQT 728

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
              ++                     R  +++    +          +           ++
Sbjct: 729  FETDYP----------------GAARFFLEKNYRST---------QTIVSAAYHVITGQD 763

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
             D    ++ +       V +    +ER EA+     +   +                   
Sbjct: 764  DDPGRVRVYSDIAGVPVVTVARLASERAEAVFAGRTIERMVGGLG--------------- 808

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI-ATLVKHPLAKFGFP 460
                +       +  AG+  +                 + +   I   +V          
Sbjct: 809  -FHSVDFGKAGYEAPAGLGFADFAVLCRTRRQTEVFADVLESAGIPCHVVSKQRIYAARG 867

Query: 461  EKYLSRAKNALELVALRGNKNSYD--IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                       E  A   +       +    +     + +             L+  ++ 
Sbjct: 868  VGEAISLLRLAEGQATFIDLEKAGGVLYGATAAKKQAVISAWAKERNLPAAEVLAATERF 927

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                L     + +           +  G+L ++   +  +  ++ +    +    N    
Sbjct: 928  PVPGLSQAAQRRLAGAARTVAELKARTGHLPVAGRLRFLIENMEPLATLVNGSKKNREAF 987

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            +     +                  +       +         +     + ++    ++ 
Sbjct: 988  DAAVEAARP-------------AGTDATAFFDTVALAADADAVMPGVDRVRLMTLHAAKG 1034

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
            L F  + + G  E + P +   +       +  L                 M      L 
Sbjct: 1035 LEFAVVFVAGCEEDLVPFSGYGDRATDIDEERRL-------------FYVAMTRAKERLF 1081

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
             T +          +  L R +     D  +  +       
Sbjct: 1082 LTWAKNRTLYGKRKACTLSRFVADIEGDLKEQAEVETGRPP 1122


>gi|324993214|gb|EGC25134.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK405]
 gi|327461484|gb|EGF07815.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1]
          Length = 762

 Score = 83.0 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 67/627 (10%), Positives = 170/627 (27%), Gaps = 105/627 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102
           ++     T +A +E+R    E    ++   +   I +   +       +       N   
Sbjct: 54  NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108

Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V   ++   + R++             L P+       +    I  AKN  D+ID + 
Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                 +    +                      + + L +  A       +  +R   +
Sbjct: 156 YANLADDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           +       +     I +     +  A  +L+  +A+      V+   D       W    
Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P+  +  L                                   +
Sbjct: 259 MQNILDFEK-----DYPEAKVVLL---------------------EENYRSTKTILQAAN 292

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
                N +     +    +   ++    A++E++EA+ +A  +     E    K  A++ 
Sbjct: 293 EVIRNNRNRRPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R V+  L +  I   +  G    +      + S LN I   +D ++   +V  P
Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                                  +       +  ++     +  +  + +          
Sbjct: 413 -----------------------KRGVGPGTVEKIRDFAASQEISLLDASANILLSPVKG 449

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +            +      L+  +   +       +    + T                
Sbjct: 450 KA--------AQAVYDFANMLLDLRECLDDYTVTDLVEAVLEKTGYAAALAAQATLESKA 501

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +   EE  +++  F +  +  +  ++   +    +  L           +SS + ++  
Sbjct: 502 RIENIEEFLSVTKNFDESPDNPTD-ESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTL 560

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ L F  + L G+ E V+P + A 
Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRAS 587


>gi|167631048|ref|YP_001681547.1| ATP-dependent DNA helicase pcra [Heliobacterium modesticaldum Ice1]
 gi|167593788|gb|ABZ85536.1| ATP-dependent DNA helicase pcra [Heliobacterium modesticaldum Ice1]
          Length = 731

 Score = 83.0 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 72/696 (10%), Positives = 171/696 (24%), Gaps = 111/696 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     + G ++          DV    F +  +     +     
Sbjct: 55  HILAITFTNKAAAEMRERLGRLIGPRA---------HDVWVSTFHSTCMRILRKDGEKLG 105

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             R   +       +  L + +K+L  +     P +   A          I   +     
Sbjct: 106 YDRSFVIYD-YDDQQRLLKECLKELNIDEKRFKPQAVGAA----------ISSAKNRLVG 154

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA---LMRAEAEHL 222
                    + +     ++A         + ++L   NA       +    L R     L
Sbjct: 155 PVAFERQAYDHFA---QISAK----VYHIYQKKLKAHNAMDFDDLLVNGVCLFREFPHVL 207

Query: 223 MK--GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    I +     +  A   L+  +A+      V+   D       W     ++  
Sbjct: 208 DNYQDRFRYIHVDEYQDTNHAQYVLVKLLADKYRNLCVV--GDDDQSIYGWRGADIQNIL 265

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P+  + KL        + ++    V     GR                 
Sbjct: 266 DFE-----RDYPEAVVLKLEQNYRSTGKILEAANAVVGNNRGRKSK-------------- 306

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALITADRN 397
                  K+         +   + + E +EA  I   ++   +      +  A++     
Sbjct: 307 -------KLWTQNPSGQPIVAYQGETEHDEARYIVRTIKRLSESENRPYRDFAILYRTNA 359

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++      GI   I  G+          + + L  I    D ++   +V  P    
Sbjct: 360 QSRVLEEHFMYAGIPYRIFGGLRFYERKEIKDIVAYLRFISNPADAVSFRRVVNVPKRGI 419

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G                                          ++      ++     + 
Sbjct: 420 GDATVQKLL-------------------------------EHADSEGWTVGEALARVGEV 448

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                 V  +      +   +    S      +      T    +            +  
Sbjct: 449 PGLSRAVKALSAFGQMIEELRREAPSLLVTQIVEAILNRTGYVRELEAEKTEEAKGRIEN 508

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            +E  +++  F +  +             + +  +          E    + ++    ++
Sbjct: 509 IKEFLSVTKEFDRTADD--------KTLEEFLAGVSLVSDTDNYNEDEDAVVLMTMHSAK 560

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + + G+ EGV+P +  +        +  L      +   +              
Sbjct: 561 GLEFPVVFVAGMEEGVFPHSRVQFEETQVEEERRLCYVAITRARERLY-----LARAWRR 615

Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
               +   N      SR+L+ +      +  D  K+
Sbjct: 616 TLFGNTVSNK----PSRFLEEIPASLLVEEDDRAKR 647


>gi|28377922|ref|NP_784814.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1]
 gi|308180103|ref|YP_003924231.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270756|emb|CAD63661.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1]
 gi|308045594|gb|ADN98137.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 755

 Score = 83.0 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 86/687 (12%), Positives = 186/687 (27%), Gaps = 107/687 (15%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLG 82
           +L   +        +NP    +V     T +A +E+R    ++ G+ +       + +  
Sbjct: 38  VLTHRVAYLIEEQGVNPW---NVLAITFTNKAAREMRERVGKLLGESAQEVW---VSTFH 91

Query: 83  DVVEEKFTADLL-LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            +       D+  + YN    ++       L + IL           +   +S    P S
Sbjct: 92  ALCVRILRRDIEQIGYNRAFTIAGTSEQRTLVKRIL----------TEQNIDSKKFDPRS 141

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
             +AI  AK      + ++T E   E   +                       +   L  
Sbjct: 142 ILSAISNAK------NDLQTPEMYKESAASPFESVVAD-----------VYLQYQRELAA 184

Query: 202 LNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             A       +  ++   +        +     I +     +  A   L++ +A+     
Sbjct: 185 DQAVDFDDLIMLTIQLFKQNPETLAWYQNKFHYIHVDEYQDTNNAQYTLVNLLADKYKNL 244

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V+   D       W     ++            +PQ     L       +  +     V
Sbjct: 245 CVV--GDADQSIYGWRGANMENILDFEK-----DYPQADTVMLEQNYRSTKTILSAANAV 297

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
            N    R                        K+    +    ++     +E +E   +  
Sbjct: 298 INNNSTRRPK---------------------KLWTENEPGDKISYYRGQSESDETHFVIA 336

Query: 377 ALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            ++ S+ +   +    A++      +R ++  L +  I   +  G           + S 
Sbjct: 337 KIQESMQQDKMDYGDFAILYRTNAQSRVMEESLVKANIPYTMVGGNKFYDRKEIRDVLSY 396

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSYDIMDLKSLV 492
           L       D M    +V  P    G       R   +      L    N      + +  
Sbjct: 397 LTLAVNDQDSMNFERVVNEPKRGIGQTSVEKLRLFADEAGYSMLEAASNVDMANGISARA 456

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
              +A                                 +  L   +   + T     I D
Sbjct: 457 KGALAKFAA----------------------------TMNELRAMREYLSVTDLTQEILD 488

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
            T                    +   EE  +++  F    +       ++ +++D +  L
Sbjct: 489 RTGYMKALKDAKATKSLEAQARIENIEEFLSVTKQFDDSYQPEDE---DSDKFVDFLADL 545

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA---KNPFLSRVMQ 669
                V    E+   + ++    ++ L F  + L G+ EG++P + A   ++        
Sbjct: 546 ALVSDVDNVEEEPQAVTLMTLHAAKGLEFPVVFLIGMEEGIFPLSRAMMDEDELEEERRL 605

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + + +  AEK +        M  G R 
Sbjct: 606 AYVGITRAEKKLYLTNAYSRMLYGRRQ 632


>gi|188582350|ref|YP_001925795.1| UvrD/REP helicase [Methylobacterium populi BJ001]
 gi|179345848|gb|ACB81260.1| UvrD/REP helicase [Methylobacterium populi BJ001]
          Length = 1047

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 87/872 (9%), Positives = 196/872 (22%), Gaps = 92/872 (10%)

Query: 58   QELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL 117
            ++  ++F       +   P   ++   VE        ++   +P        L  AR   
Sbjct: 217  RQAAADFASFMDGAAAAEPETVTI---VERLAEMATAVANGPDPATPAGLVRLLTARPHP 273

Query: 118  IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY 177
                K              +       +      L D  +   T         AL     
Sbjct: 274  DLCTKAGAFASYRKKGKWAAAAKEAGLSKADGDRLNDAAETHYTACCD--AWVALVQAAA 331

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-----GTKGPIII 232
            G       D  +   + + +               A      +H             +++
Sbjct: 332  GHALAALIDEARPILQRYRDHKRASAQLDFDDLIFAARDLLRDHDAVRRALGQRFAHVLV 391

Query: 233  AGSTGSIPATARLMSTVANHP------------NGAIVLPGLDCHIPTAIWNTITEKSTN 280
                 + P    +   +   P                +    D       +      +  
Sbjct: 392  DEFQDTDPLQTEIFWRLCGEPVDGDDDWIWFQIRPGALFLVGDPKQAIYRFRGADVGAYV 451

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                              LL      R     L  V+           +           
Sbjct: 452  QARDAFRAQNP-----GSLLSISTNFRSCASILTFVNERFEAVLSADGQPGFTALDPFHD 506

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-------------- 386
            +   L     +I     +           EA +IA      ++ +               
Sbjct: 507  DRGGLCVAALDIAVADENGKASAERQRDAEADAIAELCARLIESHPIVDRRSGSERPCQP 566

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
               AL+        R +  L R GI +   AG  L        L +L   +    D +A+
Sbjct: 567  GDIALLAPTGAELWRYEEALERRGIPVATQAGKGLFRRQEIQDLIALTRVLADRRDTLAL 626

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-SLVLDRIATQKNNTHV 505
              L++ PL      E+ L      L     R ++     + +  +++   +A +      
Sbjct: 627  GALLRGPLVG--LTEEELLDIIWGLPRSEERPDRIPRLDLSIDPAVIAHPLAREVIERLQ 684

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
               +   S    EL    VD +      L  ++        N+ +     L+        
Sbjct: 685  SLSRRGNSTTPHELLSHAVDVMRVRPLLLERHRGQAERALANIDLY--LSLSTGYAVRGL 742

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                  +   W +E  + +        E  +    +A + ++    +            +
Sbjct: 743  RAFAEAMTAAWSDEA-RAVEGRPDAQEEAVALFTMHAAKGLEWPIVIPVNTMTGVMAPDN 801

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            + +                     +                  ++    +  E    +  
Sbjct: 802  AVV---------------------DRQTETFFCPVLGIPPEGYETAREAEKDELDRERIR 840

Query: 686  HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
              +  A   R L+    L      +             G       +  G         L
Sbjct: 841  LWYVAATRARELLVLPRLDTTPSKS----------AWIGLVDLSLAELPGLDVSQLPAGL 890

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK------------- 792
              T       + +     EA+    + + +  L        A  +L+             
Sbjct: 891  TATGAGVGNTQTRASFAAEAETIAAAQTRLTWLAPSRDENAAGTVLREEEAALWTGSADD 950

Query: 793  -LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
                +          +RG + H ++ E++     +    +      +I +        P 
Sbjct: 951  QPPELEAAAFVQGGRERGLILHKLMEEVLTGETLEAEAALTERAADLIRALGRSSVADPA 1010

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
              +  + L   ++ +    +            
Sbjct: 1011 TGLSAQELAACVARTLALPDIAALRPGLLAEF 1042


>gi|320155532|ref|YP_004187911.1| exodeoxyribonuclease V subunit gamma RecC [Vibrio vulnificus
           MO6-24/O]
 gi|319930844|gb|ADV85708.1| exodeoxyribonuclease V gamma chain RecC [Vibrio vulnificus
           MO6-24/O]
          Length = 1162

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 88/736 (11%), Positives = 202/736 (27%), Gaps = 73/736 (9%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+ E  +  G  + I      L           +L         +   
Sbjct: 34  QILVQSPGMSQWLKMELAKEFGVAANIE---FPLPATFIWDMFTHVLADVPKRSAFNKEA 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK--- 164
              +L  L+         + +       L      A    L++ +ADI D          
Sbjct: 91  MTWKLMHLLPQ----QLALAEFSPLARYLQDDEEGAKLYQLSEKIADIFDGYLVYRPEWI 146

Query: 165 -KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN-ASSPVGYQIALMRAEAEHL 222
             WE   A+        W       +    +           ++   + I  +       
Sbjct: 147 RDWEAGKAVAEIGDEHPWQPML--WQALYDHTVALGQSPYHRANLYEHFIDSLENYTGQF 204

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN---------- 272
            +  +  + + G T   P     +  +  H +  ++      +    + +          
Sbjct: 205 ERLPQ-RLFVFGITSLPPRYMDALKALGQHIDVHLMFTNPCRYYWGEVRDRKFLARLAAK 263

Query: 273 ---------------TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
                            +E+       N     H +     LL  +     D   L +  
Sbjct: 264 QRQHLVWQQDHSQLQGQSEQLKGSIEDNLADELHTEVVGNSLLASMGKLGRDNMYLLSQL 323

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKI----------PNIQKCFSDVALIEADNE 367
                 + V  +             ++ E++           P I+     ++L    + 
Sbjct: 324 ESHEIEAFVDIEPDSLLHQLQADILNLEEHQDDDHIESSHHKPLIEANDRSLSLHVCHSP 383

Query: 368 REEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDISAG 418
             E   +   L    D +     +   ++ AD N        +         I   IS  
Sbjct: 384 MREVEVLHDQLLAMFDADPTLKPRDIIVMVADINAYSPAIQAVFGNAPGERFIPYSISDR 443

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELVAL 476
                +   +   +L+N          +  L++ P  L KF   E    +AK  +E   +
Sbjct: 444 TADQESPILNAFLTLVNLPQMRCLASELLELLETPAILQKFSLSETEFLQAKQWVEASGI 503

Query: 477 RGNKNSYDIMDLK----SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
           R   ++    +           +   Q+        +S    +  E  +   + +     
Sbjct: 504 RWGLDAQTGCEFDLPQTRQNTWQFGIQRMLLGYAMPESAGLFQSGEEWLAPYNEVQGMGA 563

Query: 533 PLVTYKTN--KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            L    +   +   C   +++    +     Q   +       +L  E   K++     +
Sbjct: 564 ELAGKLSYFIEKVRCYRHTLAQAQNIDAWRQQLHGVLADFFAVDLEGEVALKSIRDTLGQ 623

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS---STLFILGTLESRLLNFDTLILG 647
           + E  S     A     +I + +  +    ++ +      +     +  R + F T+ L 
Sbjct: 624 LKEQLSDAAFEAELSPSVIRQYLLNKLSGSRVSQRFLAGQVNFCTLMPMRSIPFRTVCLL 683

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE-- 705
           G+N+GV+P++ A   F     ++    ++             + +  + +  +   R   
Sbjct: 684 GMNDGVYPRSVAPEGFDLIHGRARAGDRSRRDDDRYL-FLEALLSAQQSVYISYVGRSVQ 742

Query: 706 NNIPTIASRWLQRLLV 721
           +N   + S  +  L+ 
Sbjct: 743 DNTEKVPSVLVAELME 758


>gi|197116476|ref|YP_002136903.1| ATP-dependent DNA helicase UvrD/REP [Geobacter bemidjiensis Bem]
 gi|197085836|gb|ACH37107.1| ATP-dependent DNA helicase UvrD/REP [Geobacter bemidjiensis Bem]
          Length = 732

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 73/716 (10%), Positives = 184/716 (25%), Gaps = 128/716 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     + G     LP+I +          +              
Sbjct: 53  QILGVTFTNKAAGEMRERLAHMLGDGE--LPLISTFHSTCARILRS-------------- 96

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                E+  L       + D           +  ++     + AK LA  +D  + +   
Sbjct: 97  -----EIRHLGYDSNFAIYDDRDCEKLLKDCAAELNLDEKRYPAKALAGALDEFKNQGLA 151

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            +D+          +       L    + + ERL   NA       +  ++   +     
Sbjct: 152 PDDVPT-----DSPY-QAT---LARVYRCYQERLKRCNAVDFGDLLLLAVQLLEQVKEVR 202

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    I++     + P   RL+  +A       V+   D       W     ++  
Sbjct: 203 DKYLQRYRWIMVDEYQDTNPVQYRLVQLLAGERKNLCVV--GDDDQSIYGWRGADIRNIL 260

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                   +K   +++    +  +   +  + +         + 
Sbjct: 261 EFEKDFP----------------GVKVVKLEQNYRSTKTILDGAWNVVQKNRGRKPKRLW 304

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
             +    +          +      NE EEA ++       LDE     + A+       
Sbjct: 305 TDNPDGER----------IVYRTLPNEWEEARTVCRETERFLDEGGDLSEVAVFYRTNAQ 354

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R V+  +   G+   +  G+     L    + + L  +   +D +A+  ++  P     
Sbjct: 355 SRAVEDAMVSAGVAYHMVGGVRFYARLEVKDILAYLKVLDNPSDDVALKRIINTP----- 409

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                  +  +  L     ++     +      +   LS   K 
Sbjct: 410 ------------------PRGIGNTTVQRLSEFAAEKGIPLYDAMLEGAFGPLLSVAAKG 451

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD-EHRKLPNLWF 577
                   I                    + +S+ T   +                    
Sbjct: 452 KVAAFAQEI-----------DGYKEKAEQMPLSELTSTIIYESGYFARLKALGSDEAQER 500

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-IDGETVKPKIEKSSTLFILGTLES 636
            E  + L +                    D + ++ +  +  +    K S+  ++    +
Sbjct: 501 IENLQELVTAMQAYESGPGE-----KGLADFLEQVALVSDLEQEGDGKKSSATLMTLHSA 555

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + + G+ E ++P   A              L+   +   +    +      + 
Sbjct: 556 KGLEFPLVFIIGMEERLFPHVRA--------------LEDPAQMEEERRLCYVGMTRAKK 601

Query: 697 LIYTRSLREN-----NIPTIASRWLQRLLVLG---GTDFFDNLKKRGQCYLDWTRK 744
            ++  ++R             +R++  +       G ++ +  + R     +    
Sbjct: 602 RLFLLNVRRRHIFGQEQMNPPARFIADIPRELLDSGENWQEPARHREFPSHNLASL 657


>gi|197120525|ref|YP_002132476.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196170374|gb|ACG71347.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 797

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 79/724 (10%), Positives = 168/724 (23%), Gaps = 90/724 (12%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T +A  E+R     + G  +  L  +++           +   +  L+P  + 
Sbjct: 62  HVLAVTFTNKAAGEMRERLERLLGPLAREL-WVQTFHAFGARFLRREAARA-GLSPSFAI 119

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                +L RL+    ++L     +      +   I       L          ++     
Sbjct: 120 YDDDDQL-RLVKGLLSELGLDEGEGLTPRQVLSQIDRWKNQALRAA------EVKVAGLD 172

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E   A                 K     + + L    A       +  +R   E     
Sbjct: 173 PETARA-----------------KEVYHRYEQALARAGAVDFGDLLLRPVRLLEEDAALR 215

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
               G    +++     + P   RL+  +        V+   D       W      +  
Sbjct: 216 ARWAGRFRYLLVDEFQDTNPVQYRLLQLLTGPRRNVCVV--GDDDQAIYRWRGADVSNIL 273

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G    ++                   R
Sbjct: 274 GFDGDFP--------------------------GTKVVKLEQNYRSTRTILDAAHAVISR 307

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR--MSLDENKKKSALITADRNL 398
                E ++       + +AL+  ++E  EA  IA A+        +  + A++      
Sbjct: 308 ARRRREKRLWTESGAGAPLALLVGEDEHAEAERIARAVAAERGRGTSGDEIAVLYRTNAQ 367

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  +    I   I  G             + L         + +  +V  P    G
Sbjct: 368 SRPLEAAMRAARIPYVIVRGTSFYERAEVRDAAAYLRLALSPASDLDLERVVNRPPRGIG 427

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                  RA                             A +         +     E K 
Sbjct: 428 GKTVERLRAH---------------------------AAARGLPLVEAVAERDAVAELKP 460

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            A   +      +T L       ++      +   + +     +    +   +  NL   
Sbjct: 461 AARRALAEFHALVTGLAADVPALDAGVAVQEVLKRSGMLSRLEEEHTDEAVERAENLAEL 520

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                               +      +      I              + ++    ++ 
Sbjct: 521 VAAAREFDESIAGEPPPGDPEEVRPPPLARFLEQIALLGEADAATPEGRVALMTLHAAKG 580

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F+ + L G+ +G  P         S      L+ +    Y+G       +        
Sbjct: 581 LEFEAVFLAGMEDGTLPYERPWADQTSSERDESLDEERRLCYVGMTRAKRRLTISLARRR 640

Query: 699 YTRSLRENN-IPTIASRWLQRL-LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
                   +      SR+L+ L   L G      ++ R         +     + P    
Sbjct: 641 IGYGENGPSYRNMEPSRFLRDLPPELFGDAVAREVRAREAAQAAPVARPPTIRRLPGALE 700

Query: 757 PKPF 760
            +P 
Sbjct: 701 GEPH 704


>gi|326440246|ref|ZP_08214980.1| RecB family exonuclease [Streptomyces clavuligerus ATCC 27064]
          Length = 264

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 74/253 (29%), Gaps = 32/253 (12%)

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             P     R I +L              RGTL H ++  L      + T      +     
Sbjct: 3    CPLLYRFRVIDRLPER-----PSAAATRGTLVHAVLERLFDAPAAERTAGRARSLVPGQW 57

Query: 841  SHFEKENLP----------PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                 +                   W      +   +   E+  +  +E     +  ++ 
Sbjct: 58   DRLLADRPELGGLFEGDTGGERLAGWLAEAEALVERWFSLEDPTR--LEPAEREMFVEVG 115

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            ++S G+ L G  DR+D+  +G V I DYKTG  P+     +    Q+   A  +      
Sbjct: 116  LDS-GLRLRGVIDRVDVAPTGEVRIVDYKTGKAPRP-EYSEGALFQMHFYALVIWR---- 169

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
             +       L  + L     +                E+  + L+ +   ++   +    
Sbjct: 170  -LKKVVPRRLQLVYLGSGDVLTYDPVPAD-------LERVERKLLALWDAIRRATETGDW 221

Query: 1011 HLRLSEKSNIQSE 1023
              R ++      +
Sbjct: 222  RPRPTK-LCGWCD 233


>gi|206603867|gb|EDZ40347.1| Putative ATP-dependent DNA helicase, UvrD/REP family
           [Leptospirillum sp. Group II '5-way CG']
          Length = 746

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 80/780 (10%), Positives = 182/780 (23%), Gaps = 122/780 (15%)

Query: 12  APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE-ITGK 70
              S   R +I  LL   L++ + +          + +   T++A +EL           
Sbjct: 26  PAGSGKTRVVIARLL--YLLDRYGWSEE------RLLVVTFTRKAARELLHRISRLRPSS 77

Query: 71  KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
           + +    + +   V             +L    + +         + + R+ L       
Sbjct: 78  RPSW---VGTFHSVAARMLRQHAER-VDLPREFTIVD----GPDQLQMIRDLLGRQGLSD 129

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
               P            LA  +       ++      +            + + A+    
Sbjct: 130 KEVDPK----------KLAGRIGKW----KSAGVDPAE----AIRTSFGPFRIQAELYAA 171

Query: 191 ASKYWTERLVELNASSPVGY-QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
                  +         +   +      E     +     I++     + P   RL+  +
Sbjct: 172 YQDNLALQKALDFDDLLLTLVRCLEQDPEVRESYQRQFEHILVDEYQDTNPLQERLLRLL 231

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
           +       V+   D       +                   +P      L       R  
Sbjct: 232 SRDRQNVTVV--GDDDQSIYRFRGAEVGHILSFPKE-----YPGARQVVLTVNYRSTRPI 284

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
           V    ++ +    R                         + +  +    V L + D+E  
Sbjct: 285 VTAASSMISSALARYRK---------------------DMVSTGRPGEPVFLKKLDSEWA 323

Query: 370 EAISIAIALRMSLDEN--KKKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLH 426
           EA  +A  +R  ++     +   ++      A+      +  GI      A         
Sbjct: 324 EARFVARTIREKVERGAMFRDQVVLFRMNVQAQPFVRAFSEAGIPFQTRGAVQGFFNRRE 383

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              L + L       D +++  ++  P      P    ++A+  L+  A     +S+   
Sbjct: 384 IRDLLAYLRVSANPFDRISLGRILNIP------PRGMGAKARERLDQQAGNPGLSSW--- 434

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
               L+                      ++        D  L  +   ++    +     
Sbjct: 435 ---ELLERLSLDLSGKARESARAFANDLQEASRMARGGDGPLSLLQFWLSRTGYEKWVSE 491

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
             +  D                         EE  K L  +  +       +       +
Sbjct: 492 EEAGEDAPGR---------------------EENLKELLRMSERFGNGIGELTDRTPTGV 530

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            +    +  E      E    + +L   +++ L F  + L G  E + P  + +      
Sbjct: 531 FLEELALSQEDPGEPGESPDRVSLLTIHQAKGLEFPHVYLVGAEEDILPMKSREKV---- 586

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI-----YTRSLRENNIPTIASRWLQRLLV 721
                           +    +      R  +      TR L         SR+L+ +  
Sbjct: 587 ------------DVEEERRLFYVAMTRARDSLVITWCLTRQLFGRTESPRPSRFLRDIPP 634

Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
                     +         +          P     +P       P   S +    L  
Sbjct: 635 EAFQGDRPVFRPETSAPRQTSESFQRKVFSPPPLAPSRPGRDFRPVPEKGSPTPTGVLRP 694


>gi|288941210|ref|YP_003443450.1| UvrD/REP helicase [Allochromatium vinosum DSM 180]
 gi|288896582|gb|ADC62418.1| UvrD/REP helicase [Allochromatium vinosum DSM 180]
          Length = 669

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 77/704 (10%), Positives = 181/704 (25%), Gaps = 101/704 (14%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A +E+R           T    I +   +  E                  ++R 
Sbjct: 54  VTFTNKAAREMRERVSHQLKGTQTRGLAISTFHRLGLEI-----------------LRRH 96

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            E A L   +        + L  E    L  + A +      +   I   + +    E  
Sbjct: 97  PEAAGLHSGFALLDAQDAESLLKEGLRGLAEADALSPG---AVQHRISRWKNDLVDPERA 153

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
             L  + +           +   + +     +    +P     +      +   +G    
Sbjct: 154 AQLAEDAFEARLAALYADYERRLRIYNAVDFDDLILAPTRLFRSQPAILEQW--RGRIRY 211

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
           +++     +  A   L+  +        V+   D       W     ++      +    
Sbjct: 212 LLVDEYQDTNSAQYELVRQLTGARGAFTVV--GDDDQSIYAWRGARPENLARLQEDYP-- 267

Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                  A  +  L+       R+  ++N +   +  + +  L  +              
Sbjct: 268 -------ALRVIMLEQNYRSSARILGLANTLIANNPHVFEKRLWSEHGPGERA------- 313

Query: 350 PNIQKCFSDVALIEADNEREEA-ISIAIALRMSLDENKK--KSALITADRNLARRVKLEL 406
                      +I   +ER+EA   ++  L +   E  +    A++    + AR  +  L
Sbjct: 314 ----------RVIRCRDERDEAARVVSEILHLKFAEKCRFGDIAILFRGNHQARPFEQAL 363

Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
               +   +S G             + L  +    D  A   +V  P  + G        
Sbjct: 364 REHSVPYFLSGGTSFFARTEIKDAMAYLRLLANPTDDTAFLRIVNTPRREIGSTTLEQLA 423

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
             +  + + L        + +  +    R         +   + R   +    A  L+  
Sbjct: 424 DHSRRQGLTLLAGCTDPGLAEHLN-PRQRERLAAFVQLITDHRERGRADPVGAARALLQA 482

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           +           +   +     ++ D         Q                  G++  +
Sbjct: 483 VGYKGWLRENASSQPVAERRYQNVEDLLDWLGRLRQ------------------GESPKT 524

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
              ++++                  L+D    + +      + ++    ++ L F  + L
Sbjct: 525 SLVELVDHL---------------ALMDVLDRQDEDSGGDRVHLMTLHAAKGLEFPQVFL 569

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
            G+ E +      +       ++ +  L        + A  F +A   R           
Sbjct: 570 VGMEEEL---LPHRTSIEEDSIEEERRLAYVGITRAREALTFTLARRRRR-------YGE 619

Query: 707 NIPTIASRWLQRLLV----LGGTDFFDNLKKRGQCYLDWTRKLD 746
            +    SR+L  L        G    D+ + R          L 
Sbjct: 620 WVQGEPSRFLSELPEDQLDWDGERREDSPEDRKARGRAHLSALR 663


>gi|256372349|ref|YP_003110173.1| hypothetical protein Afer_1578 [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008933|gb|ACU54500.1| hypothetical protein Afer_1578 [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 753

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 63/554 (11%), Positives = 144/554 (25%), Gaps = 25/554 (4%)

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                         E   L     +  +   ++ V+        +  +     R      
Sbjct: 178 PLEIDAHRLPTQLDEARWLATAIENTSMAGRRTEVVAAPGDPLADLVIAALGRRGQAVVD 237

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           E  VLL D  L  +           S  G        +       N+   E       W 
Sbjct: 238 ERPVLLRDTALWRLARDGLILGTLGSLPGEPRRERRLRRIGPPPANLGDLETWLDEARWT 297

Query: 578 EEE------GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                    G   ++         +    +       +   +    ++   +  + + + 
Sbjct: 298 LNAEDLPPEGAEEAAAALLFGAARATRATDPTSSALAVMADLGRIGLERDRQPDAAVRVT 357

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
            T +        ++         P +      L R ++ +L+L      +          
Sbjct: 358 ATPQDGFEGHRFIVGADAERFPVPISDDPVLPLDRAVRLELSLGPEAAAVAAWYRGAMTL 417

Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            G R +  T +       T  S  L  L +        +  ++ +    W R+    +  
Sbjct: 418 VGARWVTVTMAHTVEAQLTRPSPLLDDLGIE-----IADRHRQTRPPGPWARRAGVISAL 472

Query: 752 PHYKRPKPFPPLEAQPR---TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                P P+           + S +++++  +         +L++       +       
Sbjct: 473 RRRATPSPWTWDIGAHHLPRSLSVTQLEEAASCGARFALSTLLRVSEPEPEGRQASSATM 532

Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQII-DSHFEKENLPPHIDIIWRHLFHKISHSF 867
           GTL H ++ +       +        + +         E     + +             
Sbjct: 533 GTLAHALLEQDDLVLDAEALFAALTDLVRSHPSPRVRTELTRDPLGVHRLRDLASHLARV 592

Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT-GDNPKK 926
           L  E+     I ++   IP ++ +      L    DR++   S    + DYK     P+ 
Sbjct: 593 LASEDLR--PIGEVHREIPFELELCGT--RLRARFDRLERQGS-TWRVLDYKLRASRPES 647

Query: 927 ETAQKLIDP-QLSLEAAALKAGSFSQIDCRKVA---NLFYIRLKQKFKIDCITNDKKKYS 982
                   P QL   A     GS  ++  R+        ++ L+ +       +      
Sbjct: 648 WPIASSDRPVQLCAYALLAAKGSSPRLPDRQPPTSVTAAWVLLRARDAHVIAPSLPDLAV 707

Query: 983 ADELSEKSLKNLIE 996
            D+     ++ L  
Sbjct: 708 IDDEICTLIERLDR 721


>gi|89098018|ref|ZP_01170904.1| AddA [Bacillus sp. NRRL B-14911]
 gi|89087181|gb|EAR66296.1| AddA [Bacillus sp. NRRL B-14911]
          Length = 1254

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 97/908 (10%), Positives = 229/908 (25%), Gaps = 150/908 (16%)

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI---------------ALMRA 217
               +      +    ++  S+ +     E         +                A++ +
Sbjct: 340  DIGEMKPHIDVLVRLVRSFSEKFNSVKSEKGLVDFADLEHFCLEILSDPSARKEGAILPS 399

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH-PNGAIVLPGLDCHIPTAIWNTITE 276
            E     +     +++     +      ++  V         +    D       +     
Sbjct: 400  EPALTYRDHFREVLVDEYQDTNMVQEAILQLVTKEGEETGNLFMVGDVKQSIYRFRLAEP 459

Query: 277  KSTNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRL---------GNVSNEM 320
                   +  T              +     + LD      K++          + + E+
Sbjct: 460  NLFLGKYTRFTVDGEKTGLKIDLARNFRSRKEVLDGTNFLFKQVMGKKVGEIDYDQAAEL 519

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
               +        P +   +      + +     +  +   L + +  + EA  +A  ++ 
Sbjct: 520  VKGASYPEDLPYPVELHLIDLDGQEKAESGEADETDAGYDLEDLEQSQHEARLMAEKIKE 579

Query: 381  SLDEN---------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
             L                   +   ++      A ++  E  + GI I  +         
Sbjct: 580  MLSSGKKVYEPKSGAYRPLMYRDIVILLRSMTWAPQIMEEFKKQGIPIYANLSSGYFEAT 639

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
              +I+ SLL  I   +  + +A++++ P+      E    R  +       +       +
Sbjct: 640  EITIMMSLLKVIDNPHQDIPLASVLRSPIVGLNEEELAQIRIAD-------KKGSYYEAM 692

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL---QCITPLVTYKTNKN 542
                          K            S   K     L+  +                K 
Sbjct: 693  KAFCETKKSGDLYDKVKPFFLDIAEWRSMARKGGLSELIWQLYRDTHFYDFAGGMPGGKQ 752

Query: 543  STCGNLSISDWTKL--------TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                  ++ D  +             L+ +     R          G+    +    I +
Sbjct: 753  RQANLRALYDRARQYEETSFRGLFRFLRFIERMRERGDDLGAARALGEQEDVVRMMTIHS 812

Query: 595  GSCIKANAIEWIDIITR----------------LIDGETVKPK----IEKSSTLFILGTL 634
               ++   +    +  +                    + V P+          L      
Sbjct: 813  SKGLEFPVVFAAGLARQFNTMDLKKTYLLDKEYGFAAKYVNPEKRISYPSLPQLAFKRKK 872

Query: 635  ESRLL----NFDTLILGGLNEGVWPKNTAKNP------FLSRVMQSDLNLKTAEKYIGQA 684
            +  +L        + L    E ++   + KN       +     +    L   ++    +
Sbjct: 873  KMEMLAEEMRVLYVALTRAKEHLFLVASVKNADKKLAGWQQGAKKDSWLLDEYDRAAASS 932

Query: 685  AHDF--EMANGTRHLIYTRSLRENNIP-------TIASRWLQRLLVLG-GTDFFDNLKKR 734
              D+        R     RS +E+             S W   +          ++  + 
Sbjct: 933  YLDWIGSALIRHRDGEPLRSGQEDAAAGSQGEIALHPSSWSVEVRQAAVTPAQDEDSDEA 992

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPK--------PFPPLEAQPRTYSFSEIKQLIN------ 780
            G+ ++D   +      +  +K            +P   +     S SE+K+         
Sbjct: 993  GEQWIDSVYEGKPVPAESPFKEKIKNSLSWQYSYPSAASHKSKQSVSEMKRQSEVKDEES 1052

Query: 781  --DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
              D      + IL        +K     +RGT  H ++        + + P     +++ 
Sbjct: 1053 GSDLVRNLKKPILN-RPRFMQEKSMTPAERGTAMHMVMQ-----HADLSNPVTEESIERQ 1106

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI---- 894
            +    ++E L      +       I+  F     +      +I   +P  +A+ +     
Sbjct: 1107 LAEMKDRELLTDEQVQVIDPAL--IAGFFQSPLGQRMRKAARIQREVPFNLALPARTAYP 1164

Query: 895  -------GIHLTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLS 938
                    + + G  D I   + G V   DYK+    G                 D Q+S
Sbjct: 1165 DWKGTEEPVLVQGIIDCIFEDEHGTVL-LDYKSDSIHGRYTGGFEEAMPVLKRRYDVQIS 1223

Query: 939  LEAAALKA 946
            L A A +A
Sbjct: 1224 LYAKAYEA 1231


>gi|284794839|gb|ADB93765.1| gp72 [Mycobacterium phage RedRock]
          Length = 302

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 84/306 (27%), Gaps = 77/306 (25%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S S+I Q    P +    RI K+   P          +GT FH +     K         
Sbjct: 12   SVSQINQYTRCPMSYKLARIDKVWARPAAWLP-----QGTAFHTVAEVYEKALAEGR-EM 65

Query: 831  INHLMKQIIDSHFEKEN-------------LPPHIDIIWRHLFHKI------SHSFLEHE 871
                 ++I    + K+                       R +  +          F+   
Sbjct: 66   SLERAQEIFKEEYAKDINALAEETPNFDWWFHSGPYNGERDIARRFHIGLEQVEKFIAWR 125

Query: 872  E--------------------KIQSSIEKIFV------------NIPAKMAI--ESIGIH 897
                                 + QS +    V             +   + +      I 
Sbjct: 126  TTKGQQVWIAPAVVDPRCGADEAQSPLTDTHVKDCLCRPAEPAIELSFSIVLDTPLGPIR 185

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
            + G+ D + ++ +G + + DYKTG+ P         D QL + A A+      +   +  
Sbjct: 186  VRGYIDAVVVV-NGELRVRDYKTGNKP-------GDDFQLGVYALAVAM----KYGVKAP 233

Query: 958  ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEK 1017
                Y    +K K   IT           +E+  +   E+   +Q GE P          
Sbjct: 234  TTGDYFMAGKKGKKAVITAPYDLTEW--TAERIAERFHEVEVQIQAGEFP----ALPEPD 287

Query: 1018 SNIQSE 1023
                 +
Sbjct: 288  KCNFCD 293


>gi|157960297|ref|YP_001500331.1| DNA-dependent helicase II [Shewanella pealeana ATCC 700345]
 gi|157845297|gb|ABV85796.1| DNA helicase II [Shewanella pealeana ATCC 700345]
          Length = 721

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 80/690 (11%), Positives = 174/690 (25%), Gaps = 123/690 (17%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
           +     T +A +E+R    ++ G   + +  I +   +           + NL      +
Sbjct: 57  ILAVTFTNKAAKEMRERVEKVAGGNMSRM-WIGTFHGLAHRLLRTHYKDA-NLPESFQIL 114

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
               +L RLI      L    K   P           +                    + 
Sbjct: 115 DSDDQL-RLIKRILKSLNLDEKQYPPRQAQGYINGKKDL-----------------GLRP 156

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG- 225
             +           + +  + LKI  + + +                L+RA    L K  
Sbjct: 157 SHI-------DAGGFPIEQNLLKI-YQIYQDSCDRAGLVDFAEI---LLRAHELWLNKPH 205

Query: 226 -------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                      I++     +       +  +A      +++   D       W     ++
Sbjct: 206 ILDHYQDRFKHILVDEFQDTNAIQYAWIRVLAGSTANVMIV--GDDDQSIYGWRGAQVEN 263

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
            +   ++                               +  +              +   
Sbjct: 264 LHKFLADFPA--------------------------AQTIRLEQNYRSSGNILNASNELI 297

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADR 396
             N D +  K+    K    + L  A NE +EA  I   +    DE  K    A++    
Sbjct: 298 ANNPDRMGKKLWTDDKDGEPIGLYCAFNEMDEARFIVGRITDWQDEGGKLEDCAILYRSN 357

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  L   GI   I  G+              L  I   ND  A   +V  P   
Sbjct: 358 AQSRVLEEALLHKGIAYRIYGGLRFFERQEIKDAMGYLRLINNKNDDAAFERVVNTPTRG 417

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G     + R     + +             L    L  +  +  N              
Sbjct: 418 IGDRTLDIIRTTARQQEMT------------LWEASLRLLEEKVLNGRA----------- 454

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                   + +   +  +V  + + +    +       + +            +    + 
Sbjct: 455 -------ANAVRGFMDLIVAMRMDTDEQSLHRMTDHVIQTSGLKAMYEAEKSEKARARVE 507

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             EE  T +  F    E     + NA      ++            E +  + ++    +
Sbjct: 508 NLEELVTAARSFVMPEEIEDMGELNA-----FLSHAALEAGEGQADEFTDAVQLMTLHSA 562

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-R 695
           + L F  + + G+ EG++P   A +                ++   +    +       +
Sbjct: 563 KGLEFPMVFMAGVEEGLFPSQMAIDEG--------------DRLDEERRLCYVGMTRAMQ 608

Query: 696 HLIYTRSLRE----NNIPTIASRWLQRLLV 721
            L  T +              SR+++ +  
Sbjct: 609 KLYITYAESRRIYGRESFARPSRFVKEIPE 638


>gi|153006847|ref|YP_001381172.1| hypothetical protein Anae109_4010 [Anaeromyxobacter sp. Fw109-5]
 gi|152030420|gb|ABS28188.1| hypothetical protein Anae109_4010 [Anaeromyxobacter sp. Fw109-5]
          Length = 932

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 65/661 (9%), Positives = 135/661 (20%), Gaps = 34/661 (5%)

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
           R  +  L      +      ++ +    D   ++   +         +      L+EAD 
Sbjct: 167 RRLLDALAGAGATVVDAGEAVATAPADTDLGTVQRALLDGRSERPALEGDGTFLLLEADT 226

Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
             E A   A   R                   A   +  L   G+              H
Sbjct: 227 PLEAAELTASLARTRPLPQATFVVPTEPATLDAALARQGLPTLGVPSAS------HLRPH 280

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
             +L   L   F   D    A L+  P        +                        
Sbjct: 281 LQVLPLRLALAFAPQDPFRAAELLLLPGGPLPGHAQRALLEALGEMPGVGSPAWRRAVEN 340

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            + +      A  K+ +      + L E          +                 S+  
Sbjct: 341 AVAAETARAAAEGKDASVAAAAGAALGERIDAWFG--GELHCPVAGIPAAAAAALCSSVA 398

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
             +                 D                           G  +   ++  +
Sbjct: 399 AWAGGRVRGALDRATAEPGSDALDDSALWSHAAAVARTLEQLLVARPPGERLPQQSLMQL 458

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             +      E      E      +           +T+  G +++            + R
Sbjct: 459 HGLAVGSGSEVAAFDGESGRPAVVPHPAGVTAPCAETVWWGFVSDADHGPAPDPWTGVER 518

Query: 667 VMQSDLN--LKTAEKYIGQAAHDFEM--ANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
                    L    +     A  +           I  R          A  +L  L   
Sbjct: 519 EALRRAGVALPDPGEQRALEAEGWRRPILGARERAILVRWRLAGADLAGAHPFLDELSSR 578

Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---------YSFS 773
                        +  L       +                 A              S +
Sbjct: 579 LADGALRRCTLASEHVLARAGDASWNAATVEVAPASIMTQRPAWKVPPQTLVPAGTLSST 638

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
            ++  +  P+    R   +L               G   H ++ +++      +      
Sbjct: 639 SLEAFLGCPFKWALRYQAQLKPGQGVNLPDGNRLLGDFAHRVLQDMLCGDEKLDFAAATA 698

Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE---------HEEKIQSSIEKIFVN 884
              +          +      + R                      E   ++    +   
Sbjct: 699 EDARAWARKAFDARVGLEAARLVRRGGEVELDRARTVVATAAASLLEFLKRTGWRPVEAE 758

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK-TGDNPKKETAQKLIDPQLSLEAAA 943
                    +    +GF D + + K G   I D K +G   ++E  ++    Q++L A+ 
Sbjct: 759 REVNGTFAGVPA--SGFVDLV-VEKDGVEAILDLKLSGLRYRQEELEEGQALQIALYASL 815

Query: 944 L 944
           L
Sbjct: 816 L 816


>gi|323489925|ref|ZP_08095147.1| ATP-dependent nuclease subunit A [Planococcus donghaensis MPA1U2]
 gi|323396432|gb|EGA89256.1| ATP-dependent nuclease subunit A [Planococcus donghaensis MPA1U2]
          Length = 1202

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 82/894 (9%), Positives = 207/894 (23%), Gaps = 136/894 (15%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + D   T     + L   +  +         +  ++ +  +    ++         +  
Sbjct: 320  GLFDAYFTR--SPKRLLE-EMREMAPLMKTLVELTQLFADQYKALKIDRALVDFSDLEHY 376

Query: 214  LMRAE--------AEHLMKGTKGPIIIAGSTGSIPATARLMSTV-ANHPNGAIVLPGLDC 264
             +                +     +++     +      +++ V +       +    D 
Sbjct: 377  ALEILMEEGEPSAIAKEYQDHFKEVLVDEYQDTNLLQETILNLVKSGDEQNGNLFMVGDV 436

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN------ 318
                  +            S              L   L+      K + + +N      
Sbjct: 437  KQSIYRFRLAEPMLFLGKYSRFR----HDAENTGLRIDLNANFRSRKEILDGTNYIFSQI 492

Query: 319  --EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
              E  G       + L            +E  + +  +   ++   +    + EA  IA 
Sbjct: 493  MGERVGEIDYDEAAALKAKAPYSEQLSPIELTLIHEPETEEELEDEDLAKSQWEARFIAK 552

Query: 377  ALRMSLDEN---------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
             +   ++                  +   ++      +     E    G+ +        
Sbjct: 553  KINELMNSEKMVNDPWTQKQRPLEYRDIVVLMRSMTWSGDFVDEFKMAGVPLYAELTGGY 612

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
               L   I+ + L  I      + + ++++ P       E    R               
Sbjct: 613  FEALEVMIMLNTLRVIDNPYQDIPLVSVLRAPFIGLKENELAEIRLAAPQASFYEAVKTF 672

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                  +     +++        +  W++          +  V         +      K
Sbjct: 673  MRAGTGIDPAAAEKLRRF--MLQLEGWRNLARRGSLAELIWQVYLDTNYYEMVGAMTNGK 730

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                   ++ D                 R +  +    +    +   S+       +  +
Sbjct: 731  QRKANLRALHDRALEYEKTSFRGLFRFLRFIDRMRERGDDLGTAKSLSEKENVVRLMTVH 790

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
              + ++       G               +   +S L + D  +                
Sbjct: 791  KSKGLEFPVVFFAGTGRAFNE--------MDFKKSYLFDQDYGLAVKAVNPDTRIEYTSL 842

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIAS------- 713
            PFL+      L +K  E         +      +  L  T S+++ +             
Sbjct: 843  PFLAVREMKQLQMKAEE-----MRVLYVAMTRAKESLYMTASVKDIDKLFEKWKVSTNEV 897

Query: 714  --RWLQRLLVLGGTDFFDNLKKRGQCYLDWT---------------------RKLDYTTK 750
                  R    G  D+      R                               L     
Sbjct: 898  RLPDFMRSRAKGYLDWIGPAVARHPDAEAQLNMTGNFLNHSSRFHIEIIESQSLLPAVGN 957

Query: 751  QPHYKRPK------------------PFPPLEAQPRTYSFSEIKQL-----INDPYAV-- 785
                 + +                  P      +    S +E+K+L     +++P +   
Sbjct: 958  IEELLKDEEFSGDYQQQVNERFNFQYPHQLAVDKRSKQSVTEMKRLQMLQRLDEPESFIQ 1017

Query: 786  ---YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                 R++L         K     D GT  H ++  +   R         + + + I++ 
Sbjct: 1018 KVTPERKMLLHRPNFMMDKRLSGADIGTAVHAVMQHIPLDRTLN-----RNEIIEFIETL 1072

Query: 843  FEKENLPP----HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM---AIESIG 895
               E L P     + +     F      +         +   I   +P        +   
Sbjct: 1073 VGMEILSPDEGKAVKVEELERF------YASKTAARLRAATNIKREVPFTYAKKDADGDH 1126

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPK----KETAQKLIDPQLSLEAAALK 945
              + G  D +   + G   + DYKT    +    +    +    QL++   A++
Sbjct: 1127 QIIQGIVDCLFEEQDG-WVLLDYKTDRVTQITNIQNEISERYGVQLTVYQEAIE 1179


>gi|237806835|ref|YP_002891275.1| exodeoxyribonuclease V, beta subunit [Tolumonas auensis DSM 9187]
 gi|237499096|gb|ACQ91689.1| exodeoxyribonuclease V, beta subunit [Tolumonas auensis DSM 9187]
          Length = 1175

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 96/880 (10%), Positives = 214/880 (24%), Gaps = 114/880 (12%)

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            +   IET   +  D+  +           A   ++   +    R  +L+    +      
Sbjct: 304  LFAQIETLLAQPNDIDDVVIAD-------ALTQVRARLQQQKLRQQQLSFDDLLTNLARA 356

Query: 215  MRAEAEHLMKGTKGP----IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
            + +E   L+           +I     + P   ++ ST+  H          D       
Sbjct: 357  LNSERGVLLAERIREQYPVAMIDEFQDTDPLQYQIFSTLYAHNPECGFYMIGDPKQAIYA 416

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
            +      +              Q +     + +          G              ++
Sbjct: 417  FRGADIFTYMQAKQQVAAHYTLQTNFRSTDELVTAVNALFAHSGAPFIYQQDIPFEAVRA 476

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-------- 382
                    ++       +     +   +V+   A  ++  A++ A  +   L        
Sbjct: 477  KGKKAGFVLQGLPQTALQCCFPLEGTGEVS--GAAYQQRMALAAAAQIHTWLVGAQQQQA 534

Query: 383  -----DENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNA 436
                        A++      A  ++  L   GI  + +S    +     +  +  LL A
Sbjct: 535  TLDGKPLRPNDIAVLVRSGREAAVMQQALRECGIASVYLSNRESVFAQAVAQDVARLLEA 594

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                 D M I   +   L  +   +                        ++   L  +  
Sbjct: 595  CLNPQDEMLIRAAMATGLQGWTVSQLARL----------NDDETLWEQTVEHIRLAGELW 644

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
              +     +  W       ++ LA    +  L  +  L        ST          + 
Sbjct: 645  RNRGILPMLRQWLFWYQIPERLLADTNGERQLTDVLHLGELLQTAASTLNGEH--ALLRW 702

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
             +        D   +   L  E +   + ++          +    I             
Sbjct: 703  LLERCHQPNGDADEQQLRLDSERQRVQIVTIHKSKGLQYGLVLLPFICAYR--------G 754

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
               P+    + + +  T                +  +      +  F++ +  +DL + +
Sbjct: 755  NDMPRYHTGNGVQLDLTGSEHAWEKAAEERLAEDLRLLYVALTRGVFVTWLGLADLKINS 814

Query: 677  AEK-YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
              K    + A    +         T   R+         WLQ+L           +    
Sbjct: 815  KTKAKDDRPAALDYLLKNDSDSALTVRFRQ---------WLQQLNNHDRAAEVAEIAFPQ 865

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
              Y + +  L     +    + +            + S        P  V          
Sbjct: 866  TPYHEISVPLPAPQARHFSGQLE-RNWRVTSYSALTVSHSTYQPTPPLPVVVSDEEPQAP 924

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK-ENLPPHIDI 854
                   P     GT  H+++ +L       +    +   ++ I  H +  +        
Sbjct: 925  RFDVFSFPRGAHAGTFLHSLLEDL-------DFGADDAFCRKWITEHLQGVQLSHDWQPE 977

Query: 855  IWRHLFHKISHSFLEHEE---KIQSSIEK--IFVNIPAKMAIESIGIH------------ 897
             W+ +  +     L  E       S +        +   + +  +               
Sbjct: 978  PWQPVLEQWLTQILNSELFPGLSLSQLTPQQCLSEMEFLLPLAPLSAPALNRCLAAGDAL 1037

Query: 898  ---------------LTGFADRIDLLKSGFVDITDYKT---GDNPKK--------ETAQK 931
                           L GF D +   + G   + DYK+   GDNP             + 
Sbjct: 1038 SANAPPLAFNEVQGMLKGFIDLVFEHQ-GRFYVVDYKSNYLGDNPAAYQQDAMAQAMLEH 1096

Query: 932  LIDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQ 967
              D Q  L   AL      ++      R +  + Y+ L+ 
Sbjct: 1097 RYDVQYQLYTLALHRYLRCRLPDYDYERHIGGVCYLFLRG 1136


>gi|169627504|ref|YP_001701153.1| exodeoxyribonuclease V, gamma subunit (RecC) [Mycobacterium
           abscessus ATCC 19977]
 gi|169239471|emb|CAM60499.1| Exodeoxyribonuclease V, gamma subunit (RecC) [Mycobacterium
           abscessus]
          Length = 1077

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 79/728 (10%), Positives = 190/728 (26%), Gaps = 60/728 (8%)

Query: 36  YDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL 95
                P   A   + VP K   + L     +  G  + +    +S   ++ E        
Sbjct: 22  LAVPAPDPFAEELVLVPAKGIERWLSQRLSDRLGVCAGV--RFRSPRSLIAEITGTVDND 79

Query: 96  SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155
            ++ +  V  +   +    L   W   L   +          L      A+  A+ LA +
Sbjct: 80  PWSPDALVWPLL-TVIDENLHQSWAVPLASHLGAFEAGEERELRQGRRYAV--ARRLAGL 136

Query: 156 IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
                 +    E L +  +             L      W   +  ++A  P      + 
Sbjct: 137 FASYARQR--PELLVSWLDGDPAEP------DLAWQPPLWRALVARVDAVPPHVRHDRVR 188

Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
               E         I + G T        L+  +A H +  + LP     +   + +   
Sbjct: 189 ARLREAPSDLPPR-ISLFGHTRLPVTDIELLDALATHHDLYLWLPHPSDALWQTLASDHG 247

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   ++ +           LL  L     +++R           S       L   
Sbjct: 248 PVPRREDIAHRSVR-------HPLLATLGRDVRELQRALPEPTSDEYLSGTTFSDSLLGW 300

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSAL 391
                  D +  +   +      V +        +   +   L   L ++     +   +
Sbjct: 301 LQSDLAADEVRPQGRALAAHDHTVQVHSCHGPARQIDVLREVLLGLLADDPTLEPRDILV 360

Query: 392 ITADRNLARRVKLEL-----------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
           +  D      +                   + + ++    + T    ++   +L+     
Sbjct: 361 MCPDIETYAPLISARFGLGESVPGAHPAHQLRVRLADRALVQTNPLLTVAGQILSLASGR 420

Query: 441 NDFMAIATLVKHPLAKFGF----------PEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
                +  L +    +  F                           R       + +   
Sbjct: 421 ATASEVLNLAESSPVRMRFGFTDDDLDAITAWVREANIRWGFDPEHRAPYGVDFLHNTWR 480

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
             +DR+      +   H     +    +++   V+   +    +    T   +  G   +
Sbjct: 481 FGIDRVLAGVALSEDAHAWLGATLPLDDVSSNRVELAGRFAEFVSQLHTTVTALSGTRPL 540

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
           ++W  +  T +  +  D                +   F++I +    +     +   ++ 
Sbjct: 541 AEWLTILSTGIDALATDSEDWPRA--------QMLREFAEIQDAAVPVSLRLSDIRALLD 592

Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
           R + G   +    ++ TL +   +  R +    + L GL++GV+P+  A +        +
Sbjct: 593 RHLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVFPRLGAVD---GDDALA 648

Query: 671 DLNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              +        +       A G     L+ T +             +    +L   D  
Sbjct: 649 RDPMTGERDIRSEDRQLLLDAIGAATETLVLTYTGANEYSGQARPPAVPLAELLDTLDIT 708

Query: 729 DNLKKRGQ 736
            +   R +
Sbjct: 709 TSQPVRDR 716


>gi|163802370|ref|ZP_02196264.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. AND4]
 gi|159173899|gb|EDP58713.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. AND4]
          Length = 1212

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 99/860 (11%), Positives = 225/860 (26%), Gaps = 97/860 (11%)

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVL 259
                +    A + ++   L+      +     I     + P    + S +        + 
Sbjct: 352  FDDLLTQLSASIDSDESALLTDRIRTLYPVAMIDEFQDTDPLQYSIFSRIYLDNPECGLF 411

Query: 260  PGLDCHIPTAIWNTITEKST-----------NITSSNTTYSTHPQYSLAKL-LDFLDIKR 307
               D       +      +             + ++  + +   Q       L       
Sbjct: 412  MIGDPKQAIYGFRGADIFTYIKARNQVSAHYTLGTNWRSGADMVQAVNQVFSLPDSPFIY 471

Query: 308  EDVKRLGNV--SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN-----IQKCFSDVA 360
            +       V  S     R   +     P  T  ++  +              +   S + 
Sbjct: 472  DTDIPFHAVNYSPSADKRVWTMGGQKQPALTYWLQAAEDKPLAKGEYLTVMAEATASQIQ 531

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGI 419
             I    +R +A  +               A++    +  R++K  L   GI  + +S   
Sbjct: 532  TILTAAQRGQACLVNG--EKQKPVKAGDIAVLVRTGSEGRKIKQALADQGIASVYLSNRD 589

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
             + T+  +  L  LL A+    +  A+   +   L               A+   A+   
Sbjct: 590  SVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALDAASLDALNNDEAVWDNAVNEF 649

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
            K    +   + ++    A             + +    E    ++  ++     L     
Sbjct: 650  KEYRKLWVQRGVLPMLRAVISKRHIAERLLEQGASSQSENGERVLTDLMHIGELLQ---Q 706

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              N    +  +  W   +++  ++       ++  L  E     +       I     ++
Sbjct: 707  ASNELDSDHGLLRWLAQSISDAEHGLGGSDDQIQRLESERNLVQIV-----TIHKSKGLE 761

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
               +    + +     E      E   T+  +   ++ L   D   L      ++   T 
Sbjct: 762  YELVFLPFVFSYREASEAKYYDAENDRTVLDITGNDASLKQADKERLAEDLRLIYVALTR 821

Query: 660  K--NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
                 F+      +         +  +A  +            ++ +E  I  +     +
Sbjct: 822  AVYACFIGASPLRNGRSTKEPTGVHHSAIGY----------LVQNGQEGGINDLFVGLSK 871

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK---QPHYKRPKPFPPLEAQPRTYSFSE 774
            +   L      +  K+  + Y+    +L+  T    Q    R           +  S   
Sbjct: 872  QQENLDSVVICEPPKQHVERYVAEQSELEALTAKELQKPIDRNWRITSYSGLIKQGSHHA 931

Query: 775  IKQ-------LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI--- 824
                         D         L       F         GT  H++  E+   +    
Sbjct: 932  EHDATIEITGFDIDSSEEQDEAALVEPERSIFNFPRGARP-GTFLHSLFEEIEFTQPATT 990

Query: 825  -------------NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS--HSFLE 869
                          +   E   +++++ID+          + +  +    ++      L 
Sbjct: 991  EENSQIILGLMESEQLDEEWLPILQKLIDTVLATPLDSKALQLNQKGTAQRLVEMEFLLP 1050

Query: 870  HEEKIQSSI-EKIFVNIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKT--- 920
             E     ++   I  + P       +G       L GF D +   + G   + D+K+   
Sbjct: 1051 IEVLSAPALNRVIQRHDPLSAKAGDLGFQTVQGMLKGFIDLVFEHQ-GKYYVLDWKSNHL 1109

Query: 921  --------GDNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQK 968
                    GD  K   A    D Q  + A AL     S++      +    ++Y+ L+  
Sbjct: 1110 GDDVCHYHGDALKSAMADHRYDLQYQIYALALHRFLRSRLPNYDYEQHFGGVYYLFLRGM 1169

Query: 969  FKIDCITNDKKKYSADELSE 988
                       K S + L E
Sbjct: 1170 DGQSDHGIFSAKPSFEFLQE 1189


>gi|21244998|ref|NP_644580.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21110722|gb|AAM39116.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 658

 Score = 82.7 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 65/712 (9%), Positives = 165/712 (23%), Gaps = 126/712 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T ++ +E+R    +           I +   +  +    +   +         
Sbjct: 50  RIAAITFTNKSAKEMRERVAKRIRGDGAEGLTICTFHALGLKFLQIEHAAA--------G 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R   +                D   +    +  +  +AI  AKNL   I   +     
Sbjct: 102 LKRGFSIFD------------SDDAAAQIKDLMHGAKPDAIEDAKNL---ISRAKNAGLS 146

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E   A                     + +  RL   NA          ++    +    
Sbjct: 147 PEQAMAAARSTREKEAAS-------LYERYQARLTTFNAVDFDDLIRLPVQILEANEDIV 199

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +   G +++     +  A  RL+  +A        +   D       W     ++  
Sbjct: 200 MGWRERIGYLLVDECQDTNDAQYRLLKMLAGPRGNFTCV--GDDDQSIYAWRGANPENLQ 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL                            ++     +     
Sbjct: 258 QM-----ARDYPALEIIKL---------------------EQNYRCSNRVLRAANALIAH 291

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLDENKKKSALITADRN 397
           N       + + Q     + + E  +   EA  +A  +     +         ++     
Sbjct: 292 NPHEHLKTLWSDQADGERIRVWECRDSEHEAEKVAAEISFLGTAKQVPWSDFCILFRGNF 351

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    +   ++ G           L S L  I   +D  A    V+ P    
Sbjct: 352 QSRPLEKALQLLRVPYHLTGGTAFLERQEVKDLLSWLRLIVNPDDDAAFLRAVQSP---- 407

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                          + +    +A               + E  
Sbjct: 408 ------------------------------KREVGATSLARLAELASAKSVPMSRAAESM 437

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L       ++       +      ++   +  +L       +    ++      F
Sbjct: 438 GALQHLPPRAANGLSAFTDILRDMREHSSSMPAGELVRLLADKSGLLNDLRNQSKDETGF 497

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +   + L  L            A+       +   +   +   K +  + + ++    S+
Sbjct: 498 QRRKRNLDELAEWFEGGPRGASASD------LAAQLALLSRNDKDDGGNQVRMMTMHASK 551

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696
            L F  + + G           ++  L   +  +      E+        +      +  
Sbjct: 552 GLEFRYVFIVGC----------EDGVLPHEVSLEEGNLQEER-----RLLYVGITRAKEQ 596

Query: 697 LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           L  + S        ++    SR+   +          +     +   +    
Sbjct: 597 LWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASA 648


>gi|304414184|ref|ZP_07395552.1| exonuclease V gamma subunit [Candidatus Regiella insecticola LSR1]
 gi|304283398|gb|EFL91794.1| exonuclease V gamma subunit [Candidatus Regiella insecticola LSR1]
          Length = 1128

 Score = 82.7 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 107/995 (10%), Positives = 240/995 (24%), Gaps = 140/995 (14%)

Query: 9   FTI--APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
           FTI  +      +E++ AL+        R    +P       I V +    Q L+ +  +
Sbjct: 2   FTIYYSNQLDILKELMTALI-------KREPLADP--FQQEIILVQSPGMAQWLQIQLAQ 52

Query: 67  ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
                + I      L           +L                +L  L+    N+    
Sbjct: 53  QFNIAANIQ---FPLPATFIWDIFIKVLPGIPKESAFCKEAMSWKLMWLLPHLLNRPIFA 109

Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWL 182
                    L+   +      L+K +AD+ D           +WE+   +        W 
Sbjct: 110 PIK----QYLNDDNNKQKIHQLSKRVADLFDQYLVYRPQWLKQWENGRLIDGLADIQQWQ 165

Query: 183 LAA-DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                 L   ++   +             Q      E+E   +G    + I G +   P 
Sbjct: 166 APLWQELVKYTRELEQPEWHRANLYQGFIQRL---HESETCPQGLPKRVFICGISALPPI 222

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK--- 298
             + +  ++ H +  ++      +    I N             + + + P  SL +   
Sbjct: 223 YLQALQALSKHIDIHLMFTNPCRYFWGDIQNYAFLAKLQSRRHRSAHRSRPSPSLPQTPS 282

Query: 299 ----------------LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVI 327
                           LL        D   L                   N ++     +
Sbjct: 283 DATLFNAEAEKNLSNPLLASWGRLGRDHLYLLSQFDDIQEIHAFADVEPDNLLHAVQHDM 342

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK- 386
            +            T    ++          + +    + + E   +   L   L  +  
Sbjct: 343 LELEDHAVIGTTVETLSHSDQKRLFDPQDRSINIHVCHSPQREVEVLQDQLLALLATDAK 402

Query: 387 ---KKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              +   ++ AD +        +         +   IS               +LL+   
Sbjct: 403 LTVRDIIVMVADIDNYTPYIQAVFGNATHERYLPFAISDRKSSQVHPVLQAFITLLDLPQ 462

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                  +   ++       F            + V   G +   D  +++ L L     
Sbjct: 463 SRFTSEQVLMFLEVQALAKKFDINEE-GLCRLRQWVKESGIRWGLDDDNVRQLSLPPTGQ 521

Query: 499 QKNNTHVPHWQSRLSEED-----------KELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                 +       + +             + + L  + + +    L+     +      
Sbjct: 522 HTWRFGLTRMLLGYAMDSSAGDWQGILPYDDSSGLAAELVGKLAEMLMQLSVWREQLSHP 581

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            ++ +W+ L    L             L   E  +    + S  +              D
Sbjct: 582 RTLVEWSCLCRKLLDTFFESNDDNEEILASIE--QQWQKIISYGVAAKYPDSVPITLLRD 639

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +    + E +  +     ++     +  R + F+ + L G+N+G++P+      F    
Sbjct: 640 DLLAHFENERISQRFLAG-SINFCTLMPMRSIPFNIVCLLGMNDGIYPRTVKPLGFDLMA 698

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRL------ 719
            Q     ++             + +  + L  +       NN     S  +  L      
Sbjct: 699 KQIQKGDRSRRDDDRYL-FLEALLSAGQQLYISYIGHSIQNNNTRYPSVLVSELLEYIAQ 757

Query: 720 -----------LVLGGTDFFDNLKKRGQCYLDWT-------RKLDYTTKQPHYKR----P 757
                               +++ +R                +  Y  +     +     
Sbjct: 758 SYRLPGDEKKCADESAQRVTEHILQRHTREPFAASNFFIGSEQQSYAAEWLPAAQGLGKA 817

Query: 758 KPFPPLEAQPRTYSFSEIKQLI---NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
            P           +   +  LI     P   + +  L ++FI    +  D          
Sbjct: 818 YPDFNQPLAIGALTEFTLHDLISFYRHPIRAFFQLRLGVNFIIEESELSDEEPF------ 871

Query: 815 IITELIKKRINKNTPEIN---HLMKQIIDSHFEKENLPPH-IDIIWRHLFHKI---SHSF 867
            +  L + + N            M Q          LP      I+              
Sbjct: 872 TLDNLARYQFNTLLLNALIEQKEMDQFFARSKAAGILPYGSFGEIYWQNQRDALMPLAQQ 931

Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
           +  E++              ++ I+     L G  
Sbjct: 932 IRQEKEQG---------YDFELDIDVGKAKLCGRI 957


>gi|302340231|ref|YP_003805437.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301637416|gb|ADK82843.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
          Length = 728

 Score = 82.7 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 84/691 (12%), Positives = 174/691 (25%), Gaps = 125/691 (18%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV-VEEKFTADLLLSYNLNPPVS 104
           S+     T +A  E+R     +    + ++  I++              LL  + N  + 
Sbjct: 59  SILAVTFTNKAAGEMRQRVAAMVPDGAKVM--IRTFHSFGAWLCRRHAKLLDLDPNFTIY 116

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           + +  L L         +     ++L P                    A +I   +    
Sbjct: 117 DDEDSLTLL-----HALEEGKKRRELAPY-------------------AHLISRAKDYAL 152

Query: 165 KWED-LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----- 218
             +D L +L  +                   + ERL E+         +  +R       
Sbjct: 153 SPDDELESLSRDPD----------FPRLYHSYEERLREMGNVDFGDLILLPVRLLQGFPE 202

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                 G    I++     S  A   L+  +A       V    D       +     K+
Sbjct: 203 VRDRFHGRFRVILVDEYQDSNVAQYHLLRELAG--PDTAVCVVGDDDQSIYRFRGAEVKN 260

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                                              G     +        +         
Sbjct: 261 IVTFPDTFP--------------------------GTKVIRLEENYRSTGRILQAASEVV 294

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
             N   L   +   +     V L    ++ +EA   A  L    D N   +A++      
Sbjct: 295 SNNRSRLGKTLRPTKGEGVKVRLCFLSDQNDEAEYCAGLL---SDGNLNDTAILYRTNAQ 351

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +   +    R GI   +   +            +LL  +    D +A   +V  P    G
Sbjct: 352 SAAFETCFLRRGIPYKVVGALRFYEREEIKDALALLALLQNPKDEVAFRRIVNKPTRGIG 411

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                              G +                A  + +T +    +R + E   
Sbjct: 412 SKSVAKL---------CDHGGRFCSG--------DLLAACAQADTLLSGKGARGAGEFFA 454

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           +   +          LV +     +    LS+S                       +  E
Sbjct: 455 VMEEIGR--------LVEHSDLAQALQEALSLSGLL--------------DYYYHRMQDE 492

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV--KPKIEKSSTLFILGTLES 636
                 S    +++   +   +        +  L    +          + + ++    +
Sbjct: 493 IAMSQKSENLQQLVAAAAEYPSGREGLSAFLEDLELDRSRLGGQDPSDENGVTLITMHNT 552

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L FD +I+ G+ EG++P   A +       +    +      I +A ++  +    R 
Sbjct: 553 KGLEFDRVIITGMEEGLFPGRGADDEDELEEERRIFYV-----SITRARYELYLTGCRRR 607

Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
            I            + SR+L+ L      + 
Sbjct: 608 TI-----WGRTEMRLPSRFLRELPKEVIEEE 633


>gi|294664984|ref|ZP_06730294.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|325925624|ref|ZP_08187008.1| ATP-dependent DNA helicase Rep [Xanthomonas perforans 91-118]
 gi|292605232|gb|EFF48573.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|325543973|gb|EGD15372.1| ATP-dependent DNA helicase Rep [Xanthomonas perforans 91-118]
          Length = 658

 Score = 82.7 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 65/712 (9%), Positives = 165/712 (23%), Gaps = 126/712 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T ++ +E+R    +           I +   +  +    +   +         
Sbjct: 50  RIAAITFTNKSAKEMRERVAKRIRGDGADGLTICTFHALGLKFLQIEHAAA--------G 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R   +                D   +    +  +  +AI  AKNL   I   +     
Sbjct: 102 LKRGFSIFD------------SDDAAAQIKDLMHGAKPDAIEDAKNL---ISRAKNAGLS 146

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E   A                     + +  RL   NA          ++    +    
Sbjct: 147 PEQAMAAARSTREKEAAS-------LYERYQARLTTFNAVDFDDLIRLPVQILEANEDIV 199

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +   G +++     +  A  RL+  +A        +   D       W     ++  
Sbjct: 200 MGWRERIGYLLVDECQDTNDAQYRLLKMLAGPRGNFTCV--GDDDQSIYAWRGANPENLQ 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL                            ++     +     
Sbjct: 258 QM-----ARDYPALEIIKL---------------------EQNYRCSNRVLRAANALIAH 291

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLDENKKKSALITADRN 397
           N       + + Q     + + E  +   EA  +A  +     +         ++     
Sbjct: 292 NPHEHLKTLWSDQADGERIRVWECRDSEHEAEKVAAEISFLGTAKQVPWSDFCILFRGNF 351

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    +   ++ G           L S L  I   +D  A    V+ P    
Sbjct: 352 QSRPLEKALQLLRVPYHLTGGTAFLERQEVKDLLSWLRLIVNPDDDAAFLRAVQSP---- 407

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                          + +    +A               + E  
Sbjct: 408 ------------------------------KREVGATSLARLAELASAKSVPMSRAAESM 437

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L       ++       +      ++   +  +L       +    ++      F
Sbjct: 438 GALQHLPPRAANGLSAFTDILRDMREHSSSMPAGELVRLLADKSGLLNDLRNQSKDETGF 497

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +   + L  L            A+       +   +   +   K +  + + ++    S+
Sbjct: 498 QRRKRNLDELAEWFEGGPRGASASD------LAAQLALLSRNDKDDGGNQVRMMTMHASK 551

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696
            L F  + + G           ++  L   +  +      E+        +      +  
Sbjct: 552 GLEFRYVFIVGC----------EDGVLPHEVSLEEGNLQEER-----RLLYVGITRAKEQ 596

Query: 697 LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           L  + S        ++    SR+   +          +     +   +    
Sbjct: 597 LWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASA 648


>gi|59711188|ref|YP_203964.1| exonuclease V subunit gamma [Vibrio fischeri ES114]
 gi|59479289|gb|AAW85076.1| exonuclease V (RecBCD complex), gamma subunit [Vibrio fischeri
           ES114]
          Length = 1139

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 101/863 (11%), Positives = 206/863 (23%), Gaps = 106/863 (12%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            +L   +VE  R +PL+        I V +    Q L+ E  +  G  + +      L  
Sbjct: 11  DVLKSLVVELIRLNPLD-NPFEQEQILVQSPGMSQWLKIELAKELGIAANLT---FPLPA 66

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                    +L      P  S   +     +++ +    L            L    +  
Sbjct: 67  TFIWDLFTQVLDDV---PKRSAFHKEAMTWKIVTLLPELLKQEEFAPLQR-YLENDKNQL 122

Query: 144 NAIWLAKNLADIIDIIETEEKK----WEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
               LA  +ADI D       +    WE    +   +    W     +  +  +      
Sbjct: 123 KCYQLAAKIADIFDQYLVFRPEWIQQWEAGEEVVELEGEHPWQPTL-WRALYDQTLALGH 181

Query: 200 VELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
              + ++   + I  +    +   L KG    + + G T   P     ++ +  H +  +
Sbjct: 182 SPYHRANMFEHFIETLDNYLQTGTLSKGMPKRLFVVGITSLPPRYLDALAALGQHIDVHL 241

Query: 258 VLPGLDCHIPTAIWN-------------------------TITEKSTNITSSNTTYSTHP 292
           +      +    I +                           TE+      +N     H 
Sbjct: 242 MFTNPCRYYWGEIRDRKYLARLEARNRLQVKWLDDHSEHIGDTEQLKGSIEANFEDELHT 301

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342
                 LL        D   L +                     I    L  +     + 
Sbjct: 302 SEVGNSLLASWGKLGRDNLCLLSEMEAQEIDAFVDVGNDNLLHSIQSDILNLEERSRDDV 361

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNL 398
                    I      + L    +   E   +   L        D   +   ++ AD N+
Sbjct: 362 LDNSQHKQPISSDDRSILLHSCHSPMREVEVLHDQLLDMFASDPDLKPRDIIVMVADINV 421

Query: 399 ARRVK------LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                          R+     IS               +L+           + TL++ 
Sbjct: 422 YSAAIQAVFGNAAFDRYI-PFAISDQSAEQENPVLLAFMTLMALPENRCGLSELLTLLEV 480

Query: 453 PLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK----SLVLDRIATQKNNTHVP 506
           P    +F F  +     K   E   +R   ++           +        Q+      
Sbjct: 481 PAVMSRFKFNAEQFEIVKRWAEETGIRWGLDNSTSAQFDLPEHNQNSWLFGIQRMLLGYA 540

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
             Q     E       +     +    L  +     +    L          T +  +  
Sbjct: 541 MEQGAGLFEGMASYEQVQGMNAEIAGNLAQFIDQLLTYQIILGQPHAITKWRTTINQLMD 600

Query: 567 D--EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
           D  +      L  +     L  L   + + G     +A    + +   + G     +   
Sbjct: 601 DFLDVELEGELVVKSIRDQLQKLEENLEDAGFDAPISAPIINNYLKNNLSGGKASQRFLA 660

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
              +     +  R + FD + L G+ +G +P+      F     +     ++        
Sbjct: 661 G-QVNFCTLMPMRSIPFDVVCLLGMTDGSYPRTMPVEGFDLMQKRMKPGDRSRRDDDRY- 718

Query: 685 AHDFEMANGTRHL-IYTRSLRE--NNIPTIASRWLQRL------------LVLGGTDFFD 729
               E           +   R   +N     S  +  L                  +   
Sbjct: 719 -LFLEALQSANKAFYLSYIGRSIRDNTEKAPSVLVSELLEYCQQGYCLEGDNELNPEASA 777

Query: 730 NLKKRGQCYLDW----------------TRKLDYTTKQPHYKRPK---PFPPLEAQPRTY 770
               +                         +   T K      P+          + +  
Sbjct: 778 KRLVKQLTIEHPLVPYSQQSFIGDNISYASEWLPTAKLEGAAAPEFQTAPLVYAPETKEL 837

Query: 771 SFSEIKQLINDPYAVYARRILKL 793
             +E+++    P A +  R LK+
Sbjct: 838 ELTELQRFWRLPVAYFFNRGLKV 860


>gi|240171393|ref|ZP_04750052.1| hypothetical protein MkanA1_18921 [Mycobacterium kansasii ATCC
           12478]
          Length = 289

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 68/235 (28%), Gaps = 16/235 (6%)

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
               S S        P     R I +L              RG++ H  + +L      +
Sbjct: 14  RPALSPSRATDFKQCPLLYRFRAIDRLPE-----APSAPQLRGSVVHAALEQLYALPAVQ 68

Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVN 884
             PE    + +           P   D +        + + L   +  +  +  +     
Sbjct: 69  RGPETARSLVEAAWEQVI-AGEPALADELQPQALLDEARALLSGYYRLEDPTRFDPQCCE 127

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAA 942
              ++ +    + L G+ DRID+  +G + + DYKTG  P    A        Q+     
Sbjct: 128 HRVEVELADGTL-LRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKALFQMKFYGV 186

Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
           AL               L  I L     +D   +  +    ++      + +   
Sbjct: 187 ALFRS-----RGVLPTRLRLIYLADSQVLDYSPDRDELLRFEKTLMAIWRAIQSA 236


>gi|289666279|ref|ZP_06487860.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 658

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 63/712 (8%), Positives = 165/712 (23%), Gaps = 126/712 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T ++ +E+R    +           I +   +  +    +   +         
Sbjct: 50  RIAAITFTNKSAKEMRERVAKRIRGDGADGLTICTFHALGLKFLQIEHAAA--------G 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R   +                D   +    +  +  +AI  AKNL   I   +     
Sbjct: 102 LKRGFSIFD------------SDDAAAQIKDLMHGAKPDAIEDAKNL---ISRAKNAGLS 146

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E   A                     + +  RL   NA          ++    +    
Sbjct: 147 PEQAMAAARSTREKEAAS-------LYERYQARLTTFNAVDFDDLIRLPVQILEANEDIV 199

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +   G +++     +  A  RL+  +A        +   D       W     ++  
Sbjct: 200 MGWRERIGYLLVDECQDTNDAQYRLLKMLAGPRGNFTCV--GDDDQSIYAWRGANPENLQ 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL                            ++     +     
Sbjct: 258 QM-----ARDYPALEIIKL---------------------EQNYRCSNRVLRAANALIAH 291

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLDENKKKSALITADRN 397
           N       + + Q     + + E  +   EA  +A  +     +         ++     
Sbjct: 292 NPHEHLKTLWSDQADGERIRVWECRDSEHEAEKVAAEISFLGTAKQVPWSDFCILFRGNF 351

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    +   ++ G           + S L  I   +D  A    V+ P    
Sbjct: 352 QSRPLEKALQLLRVPYHLTGGTAFLERQEVKDVLSWLRLIVNPDDDAAFLRAVQSP---- 407

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                          + +    +A               + E  
Sbjct: 408 ------------------------------KREVGATSLARLAELASAKSVPMSRAAESM 437

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L       ++       +      ++   +  ++       +    ++      F
Sbjct: 438 GALQHLPPRAANGLSAFTDILRDMREHSSSMPAGELVRMLAEKSGLLNDLRNQSKDETGF 497

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +   + L  L            A+       +   +   +   K +  + + ++    S+
Sbjct: 498 QRRKRNLDELAEWFEGGPRGASASD------LAAQLALLSRNDKDDGGNQVRMMTMHASK 551

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696
            L F  + + G           ++  L   +  +      E+        +      +  
Sbjct: 552 GLEFRYVFIVGC----------EDGVLPHEVSLEEGNLQEER-----RLLYVGITRAKEQ 596

Query: 697 LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           L  + S        ++    SR+   +          +     +   +    
Sbjct: 597 LWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASA 648


>gi|288942782|ref|YP_003445022.1| exodeoxyribonuclease V subunit gamma [Allochromatium vinosum DSM
           180]
 gi|288898154|gb|ADC63990.1| exodeoxyribonuclease V, gamma subunit [Allochromatium vinosum DSM
           180]
          Length = 1200

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 95/810 (11%), Positives = 195/810 (24%), Gaps = 98/810 (12%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE---------ITGKKSTILP 76
           L G LV      PL P  L + TI V +    Q L+              ITG +     
Sbjct: 27  LRGLLVAWMHRHPLAP--LENETILVQSNGIAQWLKLALAATPTSDDRDAITGGQGIAAA 84

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
           +   L      +    +L       P         L RL+       P    D   ++  
Sbjct: 85  LDVMLPARFIWRVYRAVLGDLPETSPFDKAPLTWRLYRLLERLTGVAPLQSSDTRFDALD 144

Query: 137 ---------SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-------- 179
                        +P     LA+ LAD+ D  +     W +  +   +            
Sbjct: 145 PLRGFLAVDGQEAAPRRRYQLAERLADLFDQYQVYRADWLEAWSQGRDVLIRPNGERRSI 204

Query: 180 ----WWLLAA---DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------ 226
                W           + +++  +     +AS    +++ L R  A      T      
Sbjct: 205 PVGQDWQPVLWRALQADVDAEHGPDDPPLRHASRAEVHRVFLERTRAGQDADPTRIAALR 264

Query: 227 ----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT------E 276
                  +I+ G +         +  +A      + +     H    I            
Sbjct: 265 SVELPRRVIVFGLSSLPRQMLEALEAIAPVCQVMLFVLNPCRHYWGDIIEGRDLFRHPYR 324

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           + T          +    +   LL     +  D  RL +  +E                 
Sbjct: 325 RQTARKVPENLDESRLHLNGHPLLAAWGKQGRDYIRLLDEQDERRRYEAYFQGLTARDQG 384

Query: 337 SDMRNTDILENKIPNIQKC---------------------FSDVALIEADNEREEAISIA 375
            D+  +    + +  +Q                          +  I A + + E   + 
Sbjct: 385 IDLFASPGTGSLLHQLQDDILELRPLHERQDQRTVIDPEHDRSLEFIVAHSPQREIEILH 444

Query: 376 IALRMSLDE--------NKKKSALITADRNLARRVKLEL-------TRFGINIDISAGIP 420
             L  + +           ++  ++  D  +       +        R  I   I+    
Sbjct: 445 DRLLDAFERSARTDRPLQPREVLVMVPDIAVHAPHIQAVFGRFDPDDRRAIPFQITDQGQ 504

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK-------FGFPEKYLSRAKNALEL 473
                    L  LLN          +  L+  P  +          P   L  A   +  
Sbjct: 505 RHRNPLVIGLEHLLNLPRARFAVSELLDLLDIPALRTRFSLDEPDLPRLRLWIAGANVRW 564

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                 + S  + +       R    +               D E    +       + P
Sbjct: 565 GLDAAQRASLGLPEGLEQNTWRFG-LRRLLLGFASGDAGPWRDIEPHDEVGGLEAALLGP 623

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
           L        +    L+           +  +  D   +          + L  L +   +
Sbjct: 624 LAQLLERLEAYWQCLTEPRTPAGWSALISALLDDFFMETSESDGVTLARILLELDAWEAD 683

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEK---SSTLFILGTLESRLLNFDTLILGGLN 650
                       ++I+   +     +P + +      +     +  R + F  + L G+N
Sbjct: 684 CVQGGLGAEPIALEIVRDSLLARLDRPSLTQRFLGGAVNFATLMPMRAIPFRQIWLLGMN 743

Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
           +G +P+      F           ++  +       +  ++   + +I        +   
Sbjct: 744 DGDYPRRRVPADFDLMAGDYRPGDRSRREDDRYLFLEALLSAREKLVIGWVGRGIRDNSE 803

Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                L   L       +      G   L 
Sbjct: 804 RPPSVLVGQLRDHLAAGWRRPDGDGARLLA 833


>gi|163756939|ref|ZP_02164046.1| Superfamily I DNA and RNA helicase [Kordia algicida OT-1]
 gi|161323058|gb|EDP94400.1| Superfamily I DNA and RNA helicase [Kordia algicida OT-1]
          Length = 914

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 60/386 (15%), Positives = 123/386 (31%), Gaps = 52/386 (13%)

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL--NLKTAEKYIGQA 684
             + I+   +S+ L F  + + GLN+   P        +   ++ +   +    E      
Sbjct: 545  AVQIMTVYQSKGLEFPIVFVPGLNKNYLPIKRPGGKQIWHFIEREWIKDQHRLEVSEEAE 604

Query: 685  AHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
               F +A       L  TRS +EN +    S + + +                  Y+   
Sbjct: 605  RRLFYVAITRSQKYLFITRS-KENRLYQKESPFAKEVSN--------------SDYI--- 646

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
               D      H +   P P  EA     +FS +K   + PY      +         +  
Sbjct: 647  -ISDKNPDYSHLENLTPTPKKEAGAIQLNFSVLKAFFDCPYRFKLISLYGFVSPITERMG 705

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                  G   HN++ E+ ++ +N        +    ID   E     P+   I      +
Sbjct: 706  -----YGNSIHNVLMEMHRRHLNG-----EDVSNINIDELVENHVHIPYATNIVLDNIKQ 755

Query: 863  ISHSFL-EHEEKIQSSIE-KIFVNIPAKMAIESIGIHLTGFADRI---DLLKSGFVDITD 917
             +++    + E+     +   +     ++ +   GI + G  D I   DL  +    I D
Sbjct: 756  TTNNVATAYLEENHKEFDNIEYAEQEIQIDLGD-GIMVNGRMDLIKKIDLDGNESTTIID 814

Query: 918  YKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
            +K+    K+   Q +   QLS+ A       + ++  +    L    L +          
Sbjct: 815  FKS---KKESQDQDITMEQLSMYAL-----GYKELTGKTADRLQIFNLDEDRNSKHTQRL 866

Query: 978  KKKYSADELSEKSLKNLIEIVTLLQN 1003
                      ++  + +I     +++
Sbjct: 867  DNSK-----IDEIKERIITSANDIRD 887


>gi|88797135|ref|ZP_01112725.1| DNA helicase II [Reinekea sp. MED297]
 gi|88780004|gb|EAR11189.1| DNA helicase II [Reinekea sp. MED297]
          Length = 720

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 76/729 (10%), Positives = 175/729 (24%), Gaps = 135/729 (18%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP---P 102
           SV     T +A +E++S    +    S  L  I +   +      A       L      
Sbjct: 55  SVLAVTFTNKAAREMKSRVEALLEAPSQGL-WIGTFHGLAHRLLKAH-WQQAKLPQHFQV 112

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           + +  +L  + R+I     +   I                  A +           + T+
Sbjct: 113 MDSDDQLRLVKRIINEMNIEDDRIQPKQVQWFINGQKDEGRRAAY-----------VLTQ 161

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                            W+      LK     +     +            L+RA    L
Sbjct: 162 G---------------DWYQET---LKDIYVRYEALCQQSGLVDFGE---LLLRAHELWL 200

Query: 223 MKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
            +             +++             +  +        ++   D       W   
Sbjct: 201 NEPSVLEHYQSRFTHVLVDEFQDINTIQYAWLKVLVGDRLSLTIV--GDDDQSIYGWRGA 258

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             ++      +   +          +  L+      + + + +N +   +          
Sbjct: 259 KVENIQSFEHDFERTE---------VIRLEQNYRSTETILSAANAVIDNNQ--------- 300

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALI 392
                     L   +         + L    NE++EA  IA  +   ++   N  + AL+
Sbjct: 301 --------GRLGKNLWTEGAKGEPIRLYAGFNEQDEARFIADEMNRLIEGGVNPTEIALL 352

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R ++  L    I   I  G+     +      + L  I    D  ++  ++  
Sbjct: 353 YRSNAQSRVLEEALIHLQIPYRIYGGVRFYERMEIRNSVAYLRLILNRQDDASMERIMNV 412

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P    G       R                     L       +                
Sbjct: 413 PPRGIGNKTFETLRVLAR------------DQGCSLWVAAQMALENGV------------ 448

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNST-CGNLSISDWTKLTVTCLQNVCLDEHRK 571
                     L       +   V   T+   T      + D  K                
Sbjct: 449 ----------LAKRAANALANFVQLMTDLEETVLDKEDLGDIVKFVN------DASGMID 492

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKS---- 625
                  E+G+      +++I       +  +     +++   I   ++     ++    
Sbjct: 493 YHEKEKGEKGRARVENLNELISAAQSYASDQDYDSIAELLAMFISEASLDAGDAQADEFE 552

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++ ++    ++ L FD + L GL E ++P   +           D      E+ +    
Sbjct: 553 DSVNLMTLHSAKGLEFDHVFLAGLEENLFPHKMSMG---------DPGGLQEERRLAYVG 603

Query: 686 HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
               +    + L  T +       +     + R +     +  + ++ R          L
Sbjct: 604 ----ITRARKELTLTYAESRRLYGSETFNTVSRFVREIPAELLNEVRLRASVARPVDFGL 659

Query: 746 DYTTKQPHY 754
                    
Sbjct: 660 QQQVAIEDA 668


>gi|87122178|ref|ZP_01078061.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Marinomonas sp. MED121]
 gi|86162498|gb|EAQ63780.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Marinomonas sp. MED121]
          Length = 1137

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 74/745 (9%), Positives = 176/745 (23%), Gaps = 82/745 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A   I V +    Q L+ +  +  G  +        L      +     L        
Sbjct: 29  PFAQEQILVQSPGMAQWLKMQLAKEQGIAAGYE---FPLPSTFVWRCFGQALNDIPAQSE 85

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +    +  L RL+                   L+   S      L  ++ADI D     
Sbjct: 86  FNKPYLVWRLMRLLDQRLEDEAFQQLA----WYLAEDDSQLRRFQLCSSIADIYDQYLVY 141

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY---------QIA 213
              W  + A +  +       +        + W   L     +    +          + 
Sbjct: 142 RPDW--ISAWEAGELARDLPESKAQ----DQAWQSLLWRDLVADVALHGQSLYHRANLLE 195

Query: 214 LMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHP--NGAIVLPGLDCHIPTA 269
            +        +     G + I G +   P T + +  +A        + L     +    
Sbjct: 196 ALEDATRSRKRPPGIPGKVYIFGVSALPPNTLQSLRLLAESGWIEMHLFLQNPCQYYWGD 255

Query: 270 IWNT--ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK---------------- 311
           I +   +        +               LL        D                  
Sbjct: 256 IVDKNYLGRVLHKQANKPGLNQDTLHLDANPLLASWGRLGRDYIGELQAFASQQIEVFEP 315

Query: 312 --------RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP---NIQKCFSDVA 360
                      + +      + +        +   +    +          + +    V+
Sbjct: 316 YCTTSDDTAQSDSATPPSLLNRIQQDILELNNHGALEERSLGHTNSQYKYPLSEIDDSVS 375

Query: 361 LIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGI 411
           +    +   E   +   L    ++N     K   ++  D N        +         I
Sbjct: 376 IQVCHSALREVEVLHDKLLSLFEQNPELTPKDVIVMLPDVNQYSPFVQAVFGQAAHHQFI 435

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              +                +LL+          + ++++ P     F  +   +     
Sbjct: 436 PFSLIDQAAGMENPVVDAYVTLLSLADSRFTLSELVSVLEVPSVLNRFDIQVH-QLDRIR 494

Query: 472 ELVALRGNKNSYDIMDLKSL---------VLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
           +  +  G +   D    + L           + +        + +     S         
Sbjct: 495 QWCSDAGIRWGLDESTARELDLPSQSHNTWQNGLDRMLLGYAMGNDVIWQSLLSYGEVEG 554

Query: 523 LVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
           L   +   +   L   +  + S   + +  DW              E     + +     
Sbjct: 555 LEAELAGKLAAFLDAVRETQASLLIDKTPEDWVSFLYQLSDRFFSLEED---DAFPSLLS 611

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
           K +  + ++ +        +      ++   +       +      +     +  R + F
Sbjct: 612 KHMEDICTEWLHGEFEQSIDVNVLKLLLIPRLQEAQGSQRFLAG-KVNFCTLMPMRSVPF 670

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
             + L GLNEG +P++     F   V       ++  +          + +   HL  + 
Sbjct: 671 KVICLLGLNEGAYPRSMVPMGFDLMVGNYRSGDRSRREDDKYL-FLEALMSTREHLYISY 729

Query: 702 SLRE--NNIPTIASRWLQRLLVLGG 724
             R   +N     S  +  L+   G
Sbjct: 730 VGRSVKDNSELNPSILVSELIDYIG 754


>gi|315924912|ref|ZP_07921129.1| ATP-dependent deoxyribonuclease subunit A [Pseudoramibacter
            alactolyticus ATCC 23263]
 gi|315621811|gb|EFV01775.1| ATP-dependent deoxyribonuclease subunit A [Pseudoramibacter
            alactolyticus ATCC 23263]
          Length = 1178

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 97/913 (10%), Positives = 219/913 (23%), Gaps = 160/913 (17%)

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
             E L  L  +          D  K     +     E         +       A   +  
Sbjct: 322  PEMLEDL--QAMAAPMTALIDLTKAFDTEFARLKKEREMLDFHDIERYAQAILANDTIAV 379

Query: 226  ----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                    + I     +      ++S V    N        D       +          
Sbjct: 380  TLQKRYIQVFIDEYQDTNAVQEAILSRVRRADN---YFMVGDVKQSIYRFRQADPTIFIE 436

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                       Q   A  L  L       + + +  N+++ R M      +  D      
Sbjct: 437  KYQRFQK----QGRAADRLITLGQNFRSNQGIIDCVNDVFSRIMSPELGEIAYDDEAALI 492

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--------------DENKK 387
              + ++  P        +    +++   EA  IA  +   +                 + 
Sbjct: 493  CGLADSTHPAEPAELHVLQASASNHIEAEARYIAGRIHEMVGKEQWIAKEGVSRPLRYRD 552

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
               L+ +  +    V   L   GI     AG     ++   +  +L+  I      + + 
Sbjct: 553  IGVLMRSVSSKGETVARILADAGIPTYFDAGASYYQSIEIIVFLNLIRVIDNYQQDLPLL 612

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            ++++ P+ +F   E    R                                         
Sbjct: 613  SVMRSPIGRFSDEELAAIRIGAKN-----------------------------------R 637

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
               +  E   E    L       +  L  ++          S++D+              
Sbjct: 638  PFYQSLEAAAETKTALGQKARMFLDHLERWRK----FAYTQSVADFLWRLYLETGYYTAV 693

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK--IEKS 625
                      +     L         T   +     ++   +T+   G+ + P    E  
Sbjct: 694  GALPGGEQRQKNLRVLLQRASDYQTATLHGV-FQFPDYAQPLTKRRQGDVMTPSILSEND 752

Query: 626  STLFILGTLESRLLNFDTLILGGL-----------------------NEGVWPKNTAKNP 662
              + I+   +S+ L F  + L                                     + 
Sbjct: 753  DVVRIMTIHKSKGLEFPVVFLADCGKGANLKNATGKVHFHQKLGICPKWIDPSAKLYHDT 812

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR-------- 714
              + ++Q  +  ++  + I         A     LI   S+ +                 
Sbjct: 813  LATTLVQEQVKTESLSEEIRLLYVAMTRAMA--KLIMVGSVTDLEKEKERWEKPCMVGNL 870

Query: 715  -------------WLQRLLVLGGTD-----------FFDNLKKRGQCYLDWTRKLDYTTK 750
                         WL       G               +   +         ++L+ ++K
Sbjct: 871  KKGRQGSGVSYLDWLMMACYRPGAAQNSVSPALKIKIEEETTREAVTQERPIQQLELSSK 930

Query: 751  QPHYKRPKPFPPLEAQPRT----YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
            Q    + +     ++  R      S ++++ L  +P    A  ++++          +  
Sbjct: 931  QLQEIKRRLSWHYQSAGRPAPSKLSVTQVEHLRENPDRG-ADALIEIPERMAKPAFMEAA 989

Query: 807  --------DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
                    + G+  H ++  +    I     +   +   +         L      + + 
Sbjct: 990  GLRHWQPSELGSGIHTLLQRIDLDGIRACGGDTAQIADAVRAEAARLAELGILEAALVKA 1049

Query: 859  LFHKISHSFLEHEE-KIQSSIEKIFVNIPAKMAIESI---------GIHLTGFADRIDLL 908
            L  +     +     K           +P  +A+             + L G  D   + 
Sbjct: 1050 LDLRPVVRLMGSPIGKRLLQAVTCRRELPFNLAVPGRRINPIYGEETVLLQGMIDCCFI- 1108

Query: 909  KSGFVDITDYKTGDNPKKETAQKLIDP---QLSLEAAALKAGSFSQIDCRKVAN--LFYI 963
            +     + DYKT     +E   +LI     Q+          + + I  R VA   L +I
Sbjct: 1109 EDDRWILLDYKTDRWHSQEARDRLIARYQIQIDFY-----EQALAAITGRPVAEKYLLFI 1163

Query: 964  RLKQKFKIDCITN 976
             + +  ++     
Sbjct: 1164 TMGEAVRLSPAEK 1176


>gi|294625790|ref|ZP_06704408.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599905|gb|EFF44024.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 658

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 65/712 (9%), Positives = 165/712 (23%), Gaps = 126/712 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T ++ +E+R    +           I +   +  +    +   +         
Sbjct: 50  RIAAITFTNKSAKEMRERVAKRIRGDGADGLTICTFHALGLKFLQIEHAAA--------G 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R   +                D   +    +  +  +AI  AKNL   I   +     
Sbjct: 102 LKRGFSIFD------------SDDAAAQIKDLMHGAKPDAIEDAKNL---ISRAKNAGLS 146

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E   A                     + +  RL   NA          ++    +    
Sbjct: 147 PEQAMAAARSTREKEAAS-------LYERYQARLTTFNAVDFDDLIRLPVQILEANEDIV 199

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +   G +++     +  A  RL+  +A        +   D       W     ++  
Sbjct: 200 MGWRERIGYLLVDECQDTNDAQYRLLKMLAGPRGNFTCV--GDDDQSIYAWRGANPENLQ 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL                            ++     +     
Sbjct: 258 QM-----ARDYPALEIIKL---------------------EQNYRCSNRVLRAANALIAH 291

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRN 397
           N       + + Q     + + E  +   EA  +A  +       +       ++     
Sbjct: 292 NPHEHLKTLWSDQADGERIRVWECRDSEHEAEKVAAEISFLGTAKQVPWNDFCILFRGNF 351

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    +   ++ G           L S L  I   +D  A    V+ P    
Sbjct: 352 QSRPLEKALQLLRVPYHLTGGTAFLERQEVKDLLSWLRLIVNPDDDAAFLRAVQSP---- 407

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                          + +    +A               + E  
Sbjct: 408 ------------------------------KREVGATSLARLAELASAKSVPMSRAAESM 437

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L       ++       +      ++   +  +L       +    ++      F
Sbjct: 438 GALQHLPPRAANGLSAFTDILRDMREHSSSMPAGELVRLLADKSGLLNDLRNQSKDETGF 497

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +   + L  L            A+       +   +   +   K +  + + ++    S+
Sbjct: 498 QRRKRNLDELAEWFEGGPRGASASD------LAAQLALLSRNDKDDGGNQVRMMTMHASK 551

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696
            L F  + + G           ++  L   +  +      E+        +      +  
Sbjct: 552 GLEFRYVFIVGC----------EDGVLPHEVSLEEGNLQEER-----RLLYVGITRAKEQ 596

Query: 697 LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           L  + S        ++    SR+   +          +     +   +    
Sbjct: 597 LWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASA 648


>gi|289667974|ref|ZP_06489049.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 658

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 63/712 (8%), Positives = 165/712 (23%), Gaps = 126/712 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T ++ +E+R    +           I +   +  +    +   +         
Sbjct: 50  RIAAITFTNKSAKEMRERVAKRIRGDGADGLTICTFHALGLKFLQIEHAAA--------G 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R   +                D   +    +  +  +AI  AKNL   I   +     
Sbjct: 102 LKRGFSIFD------------SDDAAAQIKDLMHGAKPDAIEDAKNL---ISRAKNAGLS 146

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E   A                     + +  RL   NA          ++    +    
Sbjct: 147 PEQAMAAARSTREKEAAS-------LYERYQARLTTFNAVDFDDLIRLPVQILEANEDIV 199

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +   G +++     +  A  RL+  +A        +   D       W     ++  
Sbjct: 200 MGWRERIGYLLVDECQDTNDAQYRLLKMLAGPRGNFTCV--GDDDQSIYAWRGANPENLQ 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL                            ++     +     
Sbjct: 258 QM-----ARDYPALEIIKL---------------------EQNYRCSNRVLRAANALIAH 291

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLDENKKKSALITADRN 397
           N       + + Q     + + E  +   EA  +A  +     +         ++     
Sbjct: 292 NPHEHLKTLWSDQADGERIRVWECRDSEHEAEKVAAEIAFLGTAKQVPWSDFCILFRGNF 351

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    +   ++ G           + S L  I   +D  A    V+ P    
Sbjct: 352 QSRPLEKALQLLRVPYHLTGGTAFLERQEVKDVLSWLRLIVNPDDDAAFLRAVQSP---- 407

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                          + +    +A               + E  
Sbjct: 408 ------------------------------KREVGATSLARLAELASAKSVPMSRAAESM 437

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L       ++       +      ++   +  ++       +    ++      F
Sbjct: 438 GALQHLPPRAANGLSAFTDILRDMREHSSSMPAGELVRMLAEKSGLLNDLRNQSKDETGF 497

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +   + L  L            A+       +   +   +   K +  + + ++    S+
Sbjct: 498 QRRKRNLDELAEWFEGGPRGASASD------LAAQLALLSRNDKDDGGNQVRMMTMHASK 551

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696
            L F  + + G           ++  L   +  +      E+        +      +  
Sbjct: 552 GLEFRYVFIVGC----------EDGVLPHEVSLEEGNLQEER-----RLLYVGITRAKDQ 596

Query: 697 LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           L  + S        ++    SR+   +          +     +   +    
Sbjct: 597 LWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASA 648


>gi|120405823|ref|YP_955652.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1]
 gi|119958641|gb|ABM15646.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1]
          Length = 775

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 80/740 (10%), Positives = 184/740 (24%), Gaps = 106/740 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T +A  E+R   + + G ++  +  + +              L   LN   S
Sbjct: 65  GQVLAITFTNKAAAEMRERVVSLVGPRARNM-WVSTFHSTCVRILRNQASLLPGLNSNFS 123

Query: 105 ----NIQRLLELA----------RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
               +  R L L           R            +K+       +   +      LA+
Sbjct: 124 IYDADDSRRLLLMIGKDMGLDTKRHSPRLLANGISNLKNELIGPEQAAAEASEAEDDLAR 183

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            +A +    +         +AL  +      +         ++Y+  R            
Sbjct: 184 IIASVYAEYQRR---LRAANALDFDDLIGETVAVLQAFPQIAQYYRRR------------ 228

Query: 211 QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP-----NGAIVLPGLDCH 265
                              I++     +  A   L+  +           A +    D  
Sbjct: 229 ----------------FRHILVDEYQDTNHAQYVLVRELVGTETVDGVPPAELCVVGDAD 272

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +   T ++      +   +T            L+      + + N +N +  R++
Sbjct: 273 QSIYAFRGATIRNIEDFERDFPNATTIL---------LEQNYRSTQTILNAANSVIARNV 323

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS---- 381
                 L  D  +                    +    ADNE +EA  +A  +       
Sbjct: 324 GRRDKRLWTDAGEGEL-----------------IVGYVADNEHDEARFVAQEIDALSDAV 366

Query: 382 LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
            D +    A+     N +R ++    R GI   +  G+          + + L  +    
Sbjct: 367 ADFSYNDVAVFYRTNNSSRAIEEVFIRAGIPYKVVGGVRFYERREIRDIVAYLRVLDNPG 426

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
           D +++  ++  P    G   +                                  A +  
Sbjct: 427 DSVSMRRILNTPRRGIGDRAEACVAVYAETTGANFND--------------ALAAAAEGK 472

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
              +     +  +   EL   L   +   +  LV    ++      L  S   +      
Sbjct: 473 VPMLNTRSEKAIKGFVELLDELRGGLDGELGDLVETVLDRTGYRAELEASSDPQDLARLD 532

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
               L       ++         S   ++  +           +++ ++ + D + +   
Sbjct: 533 NLNELVSVAHEFSIDLANAKALASEEGAEPQDEDVPDTGVLAAFLERVSLVADADDIPEH 592

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + ++    ++ L F  + + G  +G++P   A        +  +  L       
Sbjct: 593 GA--GVVTMMTLHTAKGLEFPVVFVTGWEDGMFPHMRALGD--PGELSEERRLAYVGITR 648

Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
            +       A         RS     +    SR+L+ +                   +  
Sbjct: 649 ARQRLYLSRAK-------VRSSWGQPMLNPESRFLREIPQELIDWRRTEQPSSFSAPVGN 701

Query: 742 TRKLDYTTKQPHYKRPKPFP 761
             +       P        P
Sbjct: 702 AGRYGAPRPSPTRPAAGKRP 721


>gi|331694962|ref|YP_004331201.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
 gi|326949651|gb|AEA23348.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
          Length = 1224

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 69/691 (9%), Positives = 150/691 (21%), Gaps = 83/691 (12%)

Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW---LLAADFL 188
                     PA    LA  +AD +     E          +  +    W         L
Sbjct: 178 AGEIGEHLADPAAVRRLAHEMADAL-----ENAPRAKGQRAEPSQTYKRWITAQRMRAEL 232

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATA 243
               + +  R                 R   EH       + T   +++     +  A  
Sbjct: 233 LPLVEAFAARKRAERTIDFADQMAIAARVAHEHPEVGATERATYRAVLLDEYQDTGHAQR 292

Query: 244 RLMSTVANHPNG-------AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
            L+  +     G         V    D       W   +  +      +      P    
Sbjct: 293 VLLRALFGRIPGTPARDDDLSVTAVGDPCQSIYGWRGASAGNLARFRGDFPSGDAP-ADE 351

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
             LL       E +             +  +S+       +                   
Sbjct: 352 YGLLTSFRNPPEVL-----------ALANTVSEPLRTAPGAVAVGELRAGPTAAVGDVRA 400

Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKKS-ALITADRNLARRVKLELTRFGINIDI 415
           + +  ++A+         A       +     + A++   R     V   L   G+ +++
Sbjct: 401 ALLPDVDAEIAWMADAVAAQWRSADAEGRPAPTSAVLVRRRADMDPVAAALRARGLPVEV 460

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                L  T     L S L  +       A   L+     + G  +     A+    +  
Sbjct: 461 VGLGGLLDTPEVRDLVSALRLVADPLAGPAAMRLLTGARFRLGVADLAALWARARELVPP 520

Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
           + G           +L        +    V         E    A       L      +
Sbjct: 521 MPGRGPGPLGPAELALGALPGEQAEQAGIVDALDDPGPPEQYSPAGFDRIRRLGRDLMWL 580

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
             +T+   T           L               L          +  +  + +    
Sbjct: 581 RARTSAPLTDLVADAERLLLLDTETAARPGPVGRAHLDAFADVVAEFSAGAEVASLTA-- 638

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                  +++++   +  DG            + +L    ++ L ++ + +  L   V+P
Sbjct: 639 ------LLDYLETAEQAEDGLAPGEIEVTPDRVQVLTVHAAKGLEWEIVAVPHLVAQVFP 692

Query: 656 KNTAKNPFLSRVMQSDLNL-------------------------------KTAEKYIGQA 684
                  +L+   +  + L                                   + + + 
Sbjct: 693 GRKIGGDWLTSPAELPVPLRGDAADLPAFDLPAGADRKECEAAVTAHQRALDDRRLVEER 752

Query: 685 AHDFEMANGTRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
              +        ++     R     + P   S +L  +           +   G     W
Sbjct: 753 RLFYVALTRAERVLLLSGHRWGAVGDKPREPSEFLVEVA--------RAMPAAGGRVEIW 804

Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
             ++      P   R              S 
Sbjct: 805 ADEIGEGASNPVADRQVTAQWPADPLGGRSA 835



 Score = 64.9 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 56/511 (10%), Positives = 125/511 (24%), Gaps = 34/511 (6%)

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            + +    +           L  F  P     +   A      R   +   + + +   + 
Sbjct: 699  DWLTSPAELPVPLRGDAADLPAFDLPAGADRKECEAAVTAHQRALDDRRLVEERRLFYVA 758

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISD 552
                ++      H    + ++ +E +  LV+    +      V    ++     +  ++D
Sbjct: 759  LTRAERVLLLSGHRWGAVGDKPREPSEFLVEVARAMPAAGGRVEIWADEIGEGASNPVAD 818

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                       +                 ++     ++         A     +D++   
Sbjct: 819  RQVTAQWPADPLGGRSADVHAGAE---LVRSALRELARRRADTLAAAAAPGAQLDLLVLG 875

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
             D   V  +  +  +              D    GG+           +   +    +  
Sbjct: 876  SDAADVPVRDGRGWSGGAAAGTGPAGSASDDEASGGIASAATAPGGEVSGGAASGAAASG 935

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
              +      G          G      + +      P  A R   +       D      
Sbjct: 936  TAQAGAAQAGGEQAGGRGRGGASD---SATDPGAPDPEAAGRSRAQPQSGSRPDAPHAPD 992

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                   D              +      P+   P  +S S++ +L           +  
Sbjct: 993  APVLDPDDPEGWAADVDVLLAERAAAAQRPVVELPAHFSVSQLVELAA-----DPDALAA 1047

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                P          RGT FH  + +        +                ++       
Sbjct: 1048 RLRRPLPLPPNPHARRGTAFHAWLEQRFGAAGLLD---------------LDELPGAADD 1092

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
                  +  ++  +FL  E   +     + V +P +  I   GI + G  D +     G 
Sbjct: 1093 GAAPDDVLEELQDAFLASEWADR---RPVEVEVPFETVIA--GIAVRGRMDAVFQDPDGG 1147

Query: 913  VDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
              + D+KTG  P  E+    +  QL+    A
Sbjct: 1148 WTVVDWKTG-PPPDESRLGALAVQLAAYRLA 1177


>gi|320104388|ref|YP_004179979.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
 gi|319751670|gb|ADV63430.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
          Length = 841

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 87/756 (11%), Positives = 187/756 (24%), Gaps = 128/756 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +S+     T +A  E++    +I          + +   V                 P+ 
Sbjct: 69  SSILAITFTNKAAGEMKRRIEDIVPNSGVW---VGTFHSVCARLMRTYA--------PLI 117

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            + R   +            D    +         +   +A   A+ L  +I   + +  
Sbjct: 118 GLDRGFTI-----------HDSSDRIKVIKACVRQLGLDDAGVSAERLEAVISKAKNDLV 166

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             E L           W   A         + +RL E +A       + ++     H   
Sbjct: 167 APETLA-------RNAWNHEAVLAARVYPLYQQRLREQSAVDFDDLLLHMVAILKNHPEV 219

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     +++     +  A   ++  ++       V    D       W      + 
Sbjct: 220 RKTLDARFRFLLVDEYQDTNLAQYAILKALSVDHPNLCVT--GDPDQSIYAWRGANIHNI 277

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +          + KL       R  +     +      R      +  PP     
Sbjct: 278 LEFEKDFPGC-----KVVKLERNYRSTRNILTTADGLIRHNRLRKPKALLTENPPGAP-- 330

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396
                              V ++   NE  EA ++A A+R  +D +       A+     
Sbjct: 331 -------------------VRVVTHANEAAEARAVAAAIRDRVDHHGFSYSDIAIFCRVT 371

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L R ++  L    I   +  G+          L + L       D +A   +V  P   
Sbjct: 372 ALTRNLESALRSARIPYQVVGGVAFYERQEVKDLLAYLKLAVNPKDDVAFERVVNTPPRG 431

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G       RA                       + +  +   +    V           
Sbjct: 432 LGQTTLDHLRAYA-------------------SRVGIPLLRAAREAQQV--------AAI 464

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
           K+ A   +      +  L T +           ++  +             E R      
Sbjct: 465 KDKAARSLRDFALLMDELATLRDQPAEAALRSVLALTSYRAYLAEAPQGEAEERLANLDE 524

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                +   +  ++    G   + + I  +D +               +  + ++    +
Sbjct: 525 LVSAAREYDATHTEPTLDGFLEEVSLISAVDRMRD------------DAGAVAVMTLHAA 572

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-R 695
           + L F  + + GL EG+ P + +         +  L               F       +
Sbjct: 573 KGLEFPVVFIIGLEEGILPHSRSSESREELEEERRL--------------LFVGITRAQK 618

Query: 696 HLIYTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNLKKR-GQCYLDWTRKLDYTTK 750
            L  +       R      I S +L  L          + ++  G  +++   +   ++ 
Sbjct: 619 ELTISHCKIREYRGQRQVMIPSCFLNELPEESVEYEDRSAREPSGFHWVEGNHRAFQSSG 678

Query: 751 QPHYK----RPKPFPPLEAQPRTYSFSEIKQLINDP 782
           +          +P  P        S +     I+ P
Sbjct: 679 RNGASWGLVPREPNHPAGRPRTMRSPTHDDDAIDPP 714


>gi|293189192|ref|ZP_06607916.1| UvrD/REP helicase family protein [Actinomyces odontolyticus F0309]
 gi|292821864|gb|EFF80799.1| UvrD/REP helicase family protein [Actinomyces odontolyticus F0309]
          Length = 1142

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 63/651 (9%), Positives = 160/651 (24%), Gaps = 63/651 (9%)

Query: 36  YDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL 95
                 L  +S+     T++A  EL     E     S  +P ++    + E+  +     
Sbjct: 55  LANHPDLSPSSILGLTFTRKAAGELGERLRERIRLLSREMPQLR--ERLDEDPVSLTYNS 112

Query: 96  SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155
                  VS     + +     +        +     E+  +        +     +  +
Sbjct: 113 FAE--RIVSEHGMRIGIDPDFSMLSEAGALDLMLQIVEAWPTDLDEDLTPLGAVGQILHL 170

Query: 156 IDIIETEEKKWEDLHALKNEKYGMWWL----------------LAADFLKIASKYWTERL 199
              I       E                                   FL   ++ + +R 
Sbjct: 171 AGEIAEHGYTVESAREALVSFGRELEQVGETNDDARRLLRANRRRIAFLDPIAE-YQKRK 229

Query: 200 VELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            ++         +   R   E        +     +++     +      ++S +     
Sbjct: 230 RDMGVLDFSDQLVLATRIVREAPAVRESLREEFRAVLLDEFQDTSVIQMDMLSMLFG--- 286

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
              V    D +     W   +  S              +     L       +  +    
Sbjct: 287 DHAVTAVGDPNQAIYGWRGASASSLESFLDRFQTGEAQESQTLTLSTAWRNDQAILDA-- 344

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                   R     +                   +         V +  A +      ++
Sbjct: 345 ------ANRVAAPLREVAAYQEGKEHLKAQSPVLVARDGAGPGHVDVAYAPDYEAALGTV 398

Query: 375 AIALRMSLDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
               R    +      ++  A++   R     V   L   GI  +I     L        
Sbjct: 399 VDFARSVRSQASEGGKRRTVAVLCRRRKDFAYVDAALRDAGIPTEIVGLGGLLDQPAVQD 458

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           + + L   +          +   P          L            R    S      +
Sbjct: 459 VRAALELAYD---------VEASPWLARLLAGIDLGATDLMALGDWSRVLARSEGTNPHQ 509

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
           ++++D + +          +  +SEE      LL + + Q    +              S
Sbjct: 510 AVLVDAVDSPPEPGWAAEGRPAISEEAVRRVRLLGERLRQVREGVG------------RS 557

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
           +++  +  +  +  +       L         + ++   +   +T      + + ++ + 
Sbjct: 558 VTEQVERAILIMGTLDDVIADPLSMGGRAALDEFIAVTAAYEKDTPGASLGSFLAYLRMA 617

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
               DG            + I+    S+ L +D +++ GL++G++P +  +
Sbjct: 618 DEREDGLEAPLGEPDPRAVLIMTVHASKGLEWDCVVVFGLSDGIFPSHDKR 668



 Score = 68.4 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 70/279 (25%), Gaps = 26/279 (9%)

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP-- 759
            +          SR               +L +    Y    +  D    +      +   
Sbjct: 840  ASVSFPEEPGPSRQRVAAAAQAVGAQIRDLAQDQDVYEALAQLGDDPAVRDTVALIEEYH 899

Query: 760  ----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                 P ++        + +  L+ D          +    P   +    +  GT+FH  
Sbjct: 900  LGLETPVVDLWAERVPATSVSALLQDADEF-----ARDMRRPMPARPSSFSALGTVFHAW 954

Query: 816  ITELIKKRINKNTPEINH-----LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
            +   +         EI         +    +  +       +    R    ++  +F   
Sbjct: 955  VERELHLASADPASEITAGNEVSAGEDATLAGGDDAADEALLTDGERERLERLRTNFRAF 1014

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG---FVDITDYKTGDNPKKE 927
                 S    + +     + +   G+ + G  D +     G      + D+K+G      
Sbjct: 1015 VANELSDYRAVAIEEAFSVQV--GGVSVQGRIDAVFERVRGDGPRYLVVDWKSGRPVSAA 1072

Query: 928  ---TAQKLIDPQLSLE--AAALKAGSFSQIDCRKVANLF 961
                       QL L   A A + G  +      VA L 
Sbjct: 1073 TKPDKVAYFVTQLRLYQRAWAARMGVDASKVGAMVAFLA 1111


>gi|167748929|ref|ZP_02421056.1| hypothetical protein ANACAC_03710 [Anaerostipes caccae DSM 14662]
 gi|167651551|gb|EDR95680.1| hypothetical protein ANACAC_03710 [Anaerostipes caccae DSM 14662]
          Length = 618

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 79/691 (11%), Positives = 179/691 (25%), Gaps = 147/691 (21%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILP-IIKSLGDVVEEKFTADLLLSYNLNPPV 103
           +++ +   TK A  E++  F+++ G+    LP    +   V                  +
Sbjct: 49  SNILVITFTKAAAAEMKERFLKLAGRS---LPVSFGTFHAVFFTILKHAYSFRAGC---I 102

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII---E 160
               +  +L R I++ R+       D                      L  +I  I   +
Sbjct: 103 LPEHKKYDLLREIIMDRDLETGDEPDF---------------------LRSLISEISLVK 141

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI-------A 213
            +    +  H+                 ++  K + E+L +          +        
Sbjct: 142 GQLLSMDYYHSQSCADSV---------FQLIYKQYNEKLRKNQWMDFDDILVYTYSLLKE 192

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
                A    K     I+I       P    ++  +A   N   ++   D       +  
Sbjct: 193 REDLLAAWQNKFQY--ILIDEFQDISPIQYEIIKMLAAPRNNLFIV--GDDDQSIYRFRG 248

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
              +       +   S   Q         LD+       +   S ++   +       + 
Sbjct: 249 AKPEIMLGFPKDYKDSEKIQ---------LDVNYRSSPEIVEASQKVIRVNKKRFDKEIR 299

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSAL 391
                              +     + L    N++EE   +A  LR   +     ++S++
Sbjct: 300 SC-----------------RDREVPIELRTFKNQQEECTYVAKRLRDEYEKGHPYEESSI 342

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           +      AR +  +L  + I   +  GIP L     +  +   +              ++
Sbjct: 343 LVRTNLGARTMLGKLMEYNIPFTVKDGIPSLFEHWIARDIIDYMRMALGDRRRSTFLRIM 402

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                  +    R   +  +I              K  T    W  
Sbjct: 403 NRP------------------KRYISREYIDQPEIS---------FEDLKEKTRDKEWLY 435

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
              +E +E   LL D +     P +     + S   N  +S++ ++     + +      
Sbjct: 436 DYIDELEEDLRLLKDMM-----PFLAVTYIRKSVGYNAFLSEYARIRKLKEEELTDVLEE 490

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
                   +  +       +  E       +                   + +    + I
Sbjct: 491 LQETARGYDTYEEWFDFMRRYTEELKAQSES-------------------RNQGKQGVVI 531

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                ++ L ++ + L  +N+GV P   A                  E+   +    +  
Sbjct: 532 STLHSAKGLEYERVFLIDVNDGVIPYKKA---------------VKTEELEEERRMFYVG 576

Query: 691 ANGTRH-LIYTRSLRENNIPTIASRWLQRLL 720
               +  L      +  N  +  S ++  L 
Sbjct: 577 MTRAKKYLHVFSVEKMYNKDSKVSDFILPLE 607


>gi|78049939|ref|YP_366114.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78038369|emb|CAJ26114.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 658

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 66/712 (9%), Positives = 168/712 (23%), Gaps = 126/712 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T ++ +E+R    +           I +   +  +    +   +         
Sbjct: 50  RIAAITFTNKSAKEMRERVAKRIRGDGADGLTICTFHALGLKFLQIEHAAA--------G 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R   +                D   +    +  +  +AI  AKNL   I   +     
Sbjct: 102 LKRGFSIFD------------SDDAAAQIKDLMHGAKPDAIEDAKNL---ISRAKNAGLS 146

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E   A+   +       A        + +  RL   NA          ++    +    
Sbjct: 147 PEQ--AMAAARSTREKEAAG-----LYERYQARLTTFNAVDFDDLIRLPVQILEANEDIV 199

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +   G +++     +  A  RL+  +A        +   D       W     ++  
Sbjct: 200 MGWRERIGYLLVDECQDTNDAQYRLLKMLAGPRGNFTCV--GDDDQSIYAWRGANPENLQ 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL                            ++     +     
Sbjct: 258 QM-----ARDYPALEIIKL---------------------EQNYRCSNRVLRAANALIAH 291

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLDENKKKSALITADRN 397
           N       + + Q     + + E  +   EA  +A  +     +         ++     
Sbjct: 292 NPHEHLKTLWSDQADGERIRVWECRDSEHEAEKVAAEISFLGTAKQVPWSDFCILFRGNF 351

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    +   ++ G           L S L  I   +D  A    V+ P    
Sbjct: 352 QSRPLEKALQLLRVPYHLTGGTAFLERQEVKDLLSWLRLIVNPDDDAAFLRAVQSP---- 407

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                          + +    +A               + E  
Sbjct: 408 ------------------------------KREVGATSLARLAELASAKSVPMSRAAESM 437

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L       ++       +      ++   +  +L       +    ++      F
Sbjct: 438 GALQHLPPRAANGLSAFTDILRDMREHSSSMPAGELVRLLADKSGLLNDLRNQSKDETGF 497

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +   + L  L            A+       +   +   +   K +  + + ++    S+
Sbjct: 498 QRRKRNLDELAEWFEGGPRGASASD------LAAQLALLSRNDKDDGGNQVRMMTMHASK 551

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696
            L F  + + G           ++  L   +  +      E+        +      +  
Sbjct: 552 GLEFRYVFIVGC----------EDGVLPHEVSLEEGNLQEER-----RLLYVGITRAKEQ 596

Query: 697 LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           L  + S        ++    SR+   +          +     +   +    
Sbjct: 597 LWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASA 648


>gi|316933463|ref|YP_004108445.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
 gi|315601177|gb|ADU43712.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
          Length = 1133

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 92/981 (9%), Positives = 247/981 (25%), Gaps = 119/981 (12%)

Query: 29   TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            TL+          +    + +   + +A  E+         + +  +  I +        
Sbjct: 225  TLIARVEGLLEEGIDPRRILLLTFSNKAAGEMAERIARKRPEAAAAM-WIGTFHAF---- 279

Query: 89   FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
               D++  ++    +S   R+++    + +   + P +    Y        I       +
Sbjct: 280  -GLDIIRRFHAELGLSKDPRMMDRTEAVELLEEEFPRLRLAHYRNLYDPTQIIADMLAAI 338

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
            ++   ++ D           L    + +       A + +      + +     +     
Sbjct: 339  SRAKDEVADAETYAGLADAMLAKAGDPEAREAAERAVE-VARVYAAYEQLKRNAHCIDFG 397

Query: 209  GY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                   Q+    A     ++     +++        ++ RL+  +   P+G  +    D
Sbjct: 398  DLVALPVQLLEKDAAICAALQARYDHVLVDEYQDVNRSSVRLLRAL--RPDGRNLWMVGD 455

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +   +  +         +    +  L +    +                    
Sbjct: 456  AKQSIYRFRGASSFNMTRFGKED-FPGGKRGRLKRNYRSVPEIVASFSGFAITMRAGDAD 514

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
            S + +                      +      ++  ++   +++ A++ AI       
Sbjct: 515  SGLEADR--------------------DANGHRPELRTVQRAEQQQVALADAIEELRREG 554

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
               ++ A++         +  +L R G+ +       L        L +LL+ +      
Sbjct: 555  YAYREQAVLCTGNEKLSTIGQDLERLGVPVLFLG--SLFERGEVKDLLALLSILVDR-RA 611

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            M +  +   P     F +                       + D         A+   + 
Sbjct: 612  MGLVRIACWPDFVTSFADVAA--------------------VFDHLRAAGHAPASWVRDG 651

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                  S             +D   Q  +P     T         +    +       + 
Sbjct: 652  ETIPGLSDAGRRTLAGLAAALDGFDQTASPWTALATLLLDRTRIAARLGTSADLADRTRG 711

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
            + + +      +     G  ++ L  ++                 +    D   +    +
Sbjct: 712  IAIWQFLNFVRVQPAGRGLPITRLLDRVRRLVR------------LGDDRDLRQLPAAAQ 759

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGV------WPKNTAKNPFLSRVMQSDLNLKTA 677
                + ++    ++ L F  + + GLN          P   A +  ++    S +    A
Sbjct: 760  HLDAVRLMTIHGAKGLEFRGVHIPGLNSDTIPRTPPVPPCPAPDGMIAGAEGSAVETFRA 819

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRS--LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
             +   Q    +   +  R  +   +   + N      S +L RL V              
Sbjct: 820  GQAEEQECLFYVAQSRARDRLILYAPTEKSNGHNRPLSPFLDRLGVTLTRHS-------- 871

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                     +      P     +    +     ++   +I    + P   +   +L++  
Sbjct: 872  ---------IVPARPLPVAAEARGVDLVVDGRLSFGAPQIALYESCPRRFFYTHVLQVGG 922

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                             H  +  ++ + I    P     ++    +    E L  H    
Sbjct: 923  RRTATAFMH-------LHEAVRSVVAEVIASGPPVSEQALQDRTAAALAGEGLADHGYSA 975

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
                   +   F        ++        P  +++   G  +    D + +   G   +
Sbjct: 976  EFRDLALVMLRFF------LANRADAVAETPVALSLNFGGEEIIVRPDEVLVRPDGVRAV 1029

Query: 916  TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
               +TG     E+            A  L   +  Q     VA L  + L          
Sbjct: 1030 RRIRTGHMRSAESKDVGAA------ALML---AVKQAFPGAVAEL--VHLSDGETHALAL 1078

Query: 976  NDKKKYSADELSEKSLKNLIE 996
            +D++     +   K L ++  
Sbjct: 1079 SDRELKGRKDKLAKFLGDIRA 1099


>gi|254467794|ref|ZP_05081200.1| RecB family exonuclease, hypothetical [beta proteobacterium KB13]
 gi|207086604|gb|EDZ63887.1| RecB family exonuclease, hypothetical [beta proteobacterium KB13]
          Length = 829

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 17/178 (9%)

Query: 775 IKQLINDPYAVYARRILKLDF-IPHFKKDPDRTDRGTLFHNIITELIKKRIN-KNTPEIN 832
           +++L   P   +   +L       H   +     RG L H ++  +  K  N +N  EIN
Sbjct: 556 LERLQTCPRWAFYEDVLHCKDDSDHLTTEYSPRLRGILIHEVLHNIWIKLKNYQNLAEIN 615

Query: 833 HLMKQI-------IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
           +LM+ I       I++  E   +   +          +    LE E+K         + +
Sbjct: 616 NLMEFIKPIVEMSIETKNEFSIMGDSVKKFEIARCTSLIQEVLEMEKKRIP-FAIKSLEV 674

Query: 886 PAKMAIESIGIHLTGFA-DRIDLLKSGFVDITDYKTGDNPKKETAQKL--IDPQLSLE 940
             +         L     DR+D   +G + + DYKTG  P   +  +L   + Q+ L 
Sbjct: 675 KQQFVHGDYSFDL---IKDRVDSDDNG-IHVIDYKTGKLPTARSWTQLPIKNFQIPLY 728


>gi|260903704|ref|ZP_05912026.1| hypothetical protein BlinB_00115 [Brevibacterium linens BL2]
          Length = 250

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 16/166 (9%)

Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
               R I KL   P          RGT+ H+++ +L +    + T ++   + +      
Sbjct: 2   KFRFRSIDKLPEPPSQ-----AAFRGTVVHSVLEKLFELPAARRTQDVAESLLRPSWDEL 56

Query: 844 EKENL-------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
             ++               +      +  ++   E      +E        +  ++  G+
Sbjct: 57  VDKDPEVLEIFGDEGEKETFFTTAANLLRAYFSLEF--PEHLEPEQTEKYVRTQLD-NGL 113

Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
            L GF DR+D+   G   + DYKTG  P K    +    Q+   A 
Sbjct: 114 ELRGFIDRVDVAPGGEKRLVDYKTGKQP-KPQYGREAHFQMGFYAL 158


>gi|332670296|ref|YP_004453304.1| RecB family exonuclease-like protein [Cellulomonas fimi ATCC 484]
 gi|332339334|gb|AEE45917.1| RecB family exonuclease-like protein [Cellulomonas fimi ATCC 484]
          Length = 301

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 79/265 (29%), Gaps = 28/265 (10%)

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
              +D T +Q    RP   P         S S     +  P     R + +L         
Sbjct: 10   ELVDATVEQAVAVRPPSRP-------GLSPSRANDFLQCPLLFRFRVVDRLPEP-----P 57

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN-------LPPHIDII 855
                 RGTL H ++  L      + T E    +     +   ++                
Sbjct: 58   SAAAARGTLVHAVLEHLFDLPAAERTLESARALVPGRWAQLREDAPDVATLFPDDDALRE 117

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
            W      +  ++   E+  +  ++     +   + +E     L G  DR+D+  +G+V +
Sbjct: 118  WLTSAEALLATYFTLEDPTR--LQPRERELMVSVELEDGP-QLRGIVDRVDVAPNGWVRV 174

Query: 916  TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
             DYKTG +P+    +     Q+   A  +               L    L     +    
Sbjct: 175  VDYKTGKSPRAGF-EGGALFQMRFYAYVIWRS-----RGVLPKLLQLEYLGDGTVLKHEP 228

Query: 976  NDKKKYSADELSEKSLKNLIEIVTL 1000
             + + ++ +         + E    
Sbjct: 229  TEPEMHTLEARVRSIWGGIEEAARA 253


>gi|182684250|ref|YP_001835997.1| DNA-dependent ATPase I and helicase II [Streptococcus pneumoniae
            CGSP14]
 gi|221232029|ref|YP_002511181.1| DNA helicase II, UvrD [Streptococcus pneumoniae ATCC 700669]
 gi|182629584|gb|ACB90532.1| DNA-dependent ATPase I and helicase II [Streptococcus pneumoniae
            CGSP14]
 gi|220674489|emb|CAR69050.1| putative DNA helicase II, UvrD [Streptococcus pneumoniae ATCC 700669]
          Length = 1334

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 56/482 (11%), Positives = 148/482 (30%), Gaps = 75/482 (15%)

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKP----KIEKSSTLFILGTLESRLLNFDTLI 645
             ++E     K     +++ ++ L +     P        S+ + ++    S+ L FD + 
Sbjct: 566  MLMECHIHPKLTVKGFLNQLSALEEMGISLPIEDISGSPSNCVQLMTAHGSKGLEFDHVF 625

Query: 646  LGGLNE-------GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
            +   N+           +N +        +      ++  K        +      + ++
Sbjct: 626  IMKCNDGKKKSEAWPGGENNSGRFSYPPSLNGKDENESQLKEEENRRLFYVAMTRAKKVL 685

Query: 699  -YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
              + +                           N  +     +D T   +          P
Sbjct: 686  HLSYANDSTKT------------------HLINEFEEFIDEVDVTESFEDCQSVDKVVMP 727

Query: 758  KPFPPLEAQPR---TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
            K    +  +     + S S +   +  P + Y  + LKL       +  +    G++ H 
Sbjct: 728  KFSNNVINEIFDELSLSVSTLNSFLKCPLSFYFNKGLKLP-----SETNEAMVFGSIIHE 782

Query: 815  IITELIKKRINKNTPEI-------NHLMKQIIDSHFEKENLPPHIDII---WRHLFHKIS 864
            ++ ++        + E+            ++ ++ FE+++     + I         KI 
Sbjct: 783  VLEKIYISVDGSQSSELTAKTVLSLEEALKLFETVFEEKSYQLTSNKIKKDDYARGKKII 842

Query: 865  HSFLEHEEKIQSSIEKIFVNIPA-KMAIESI-----------GIHLTGFADRIDLLKSGF 912
             +   +++        + V +P   + +  I            I + G  D+I+   +  
Sbjct: 843  ENL--YKKSGYLKDGVVAVEVPIQGIRLGDILNTTVDLSEVSNIEINGKIDKIECDGN-I 899

Query: 913  VDITDYKTGD---------NPKKETAQKL-IDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
            V + DYKTG+          P ++         Q       L   +   I  +++  + Y
Sbjct: 900  VCLVDYKTGNFENAKKKLVAPSEKEPLGGDYWRQAVFY-YILFKNAGIDISDKEIL-VKY 957

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022
            + ++     D  +  +      +  +  L  + E +  ++ G+      +   ++ N   
Sbjct: 958  VLVENSTNEDGFSETEDIRITQKEVDIVLNQIKESIMKIKQGDFNCGCGVLKKDRDNYPC 1017

Query: 1023 EY 1024
            +Y
Sbjct: 1018 DY 1019



 Score = 82.3 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 89/300 (29%), Gaps = 41/300 (13%)

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD---------- 802
                   +       ++ S S++ + +  P ++Y   +L+L                   
Sbjct: 1035 EALEVATYQQTRGNYKSLSVSKLNRYLRCPKSIYFEDVLQLSQAAGLSAGAKEKSTKITI 1094

Query: 803  ---PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
               P     GT  H  + ++ K+              +  DS          ID +    
Sbjct: 1095 NHAPTGPVFGTAIHETMEKIYKE------DLQLEDAIEFYDSSLYSH-QEEIIDTMSVEE 1147

Query: 860  FHKISHSFLEHEEKIQSS----IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
              +  H+ L +  +         E + +    ++ +      + G  D+++      + +
Sbjct: 1148 LKEYGHNLLTNLFEHFIPNSLKGEHVSLEKELRVKLGD-NYSINGIIDKLEFDND-LIRV 1205

Query: 916  TDYKTGDNPKK-ETAQKLID--PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
             DYKTG   +  E  +   D   Q       L+  S      +++    YI L       
Sbjct: 1206 VDYKTGSAQRGVEELEVGHDYWRQAVFYNLLLENSSEIDTTDKRIET-QYIFLDDNSTES 1264

Query: 973  CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032
              +    + + ++L +     +    + +   +  F              +Y    R+AE
Sbjct: 1265 GYSIHTIQVTKEDL-DLVTSQIQNFWSHMNTAD--FTGSC-----GKNDCDY---CRLAE 1313


>gi|83954763|ref|ZP_00963474.1| hypothetical protein NAS141_16118 [Sulfitobacter sp. NAS-14.1]
 gi|83841047|gb|EAP80218.1| hypothetical protein NAS141_16118 [Sulfitobacter sp. NAS-14.1]
          Length = 848

 Score = 82.3 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/429 (12%), Positives = 113/429 (26%), Gaps = 33/429 (7%)

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                       +L  L      +       +   +    + +      +    I   + 
Sbjct: 326 WTDMRASAGSLAQLRFLIDRICERIAQGNEVRARLSIPPGEGSPDWEAILRGIQIASPSS 385

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR----VMQSDLNL 674
                    + +    E+       LI+    +G +P     NP         +++   L
Sbjct: 386 PDPERNLEGVSLWSAHETPWRQCRHLIITDFTDGRYPTRPRANPLFLDSEITAIRTTTGL 445

Query: 675 KTAEKYIGQAAHDFE-----MANGTRHLIYTRSLRENNIPTIASRWL------------- 716
           +   +  G A   F       A              + +    S  L             
Sbjct: 446 QLRGRAEGLAESLFLFDQQLQAVAESVTFLVPWRDLSGVRQQPSAGLSLVARAISDVEEA 505

Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTR--KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
             L++        +               +L      P           +   +  S S 
Sbjct: 506 HDLILDLSRLPPGDCPVAHHRLPPLPESDELPEALSFPRLDLLALRRKDDGTSKPQSPSR 565

Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE-LIKKRINKNTPEINH 833
           ++ L+  P A     +     +    ++ D   +G + H++     +K +       +  
Sbjct: 566 LETLLVSPLAWLLDEV-GAGDMSWSAEELDVMAKGNIAHDVFEHVFLKDQPLPEPAALTA 624

Query: 834 LMKQIIDSHFEKEN--LPPHIDIIWRHLFHK-ISHSFLEH-EEKIQSSIEKIFVNIPAKM 889
            + +  D    +    L      + R    + I  + L   E  +    + I   I    
Sbjct: 625 AVAEAYDLALTRHAGFLRSASWEMERSGLEREILQAALRWREHLLALGAKIIGNEIWLAG 684

Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDY-KTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
              + GI+L G AD I  L  G + + D+ K+G + ++   +   D Q  L    L    
Sbjct: 685 E--AHGINLHGKADAILELPDGTLLVVDHKKSGTSARRRRMEAGWDLQAGLYRDMLARPI 742

Query: 949 FSQIDCRKV 957
               D    
Sbjct: 743 RRDGDGMDP 751


>gi|218781303|ref|YP_002432621.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01]
 gi|218762687|gb|ACL05153.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01]
          Length = 1156

 Score = 82.3 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 73/743 (9%), Positives = 175/743 (23%), Gaps = 166/743 (22%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG--K 70
            P +   R +        +          P     +     T +A + +     ++     
Sbjct: 523  PGTGKTRTL-----THRIARLVEKSGAAPES---ILAITFTNQAARAMAHRLEDMLDENG 574

Query: 71   KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR-NKLPDIIKD 129
                   + +                      +    RL  + + +      K+   +  
Sbjct: 575  GKVF---VATFHAFCLTLLRELAEAEGRAISVLGEKDRLFYIKKALKESGIKKIKPELAS 631

Query: 130  LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
            L+         SP++A                   ++ DL                  ++
Sbjct: 632  LHISLAKQQMASPSSA-------------------EFTDLENKAGA------------MQ 660

Query: 190  IASKYWTERLVELNASSPVGYQIALMRA-EAEHLMKG----TKGPIIIAGSTGSIPATAR 244
             A   +   +  L            +RA EA+ L +         + +           R
Sbjct: 661  EAYAAYQTMISGLGLLDFDDLMYKAVRAIEADSLYRESLQKRFPHVCVDEFQDVNHVQYR 720

Query: 245  LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
            L+  +   P  A +    D       +        N          +PQ  + +L     
Sbjct: 721  LLRQL--CPPEADLTVIGDPDQAIYGFRGSDVGFFNRF-----GEDYPQARVIELSTNYR 773

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                 +K  G V                             +  + +       + +I+ 
Sbjct: 774  STETVLKVAGQV-----------------------MGDPGQDFGLHSGIVGADQIMIIDT 810

Query: 365  DNEREEAISIAIALRMSL-------DENKK-------------KSALITADRNLARRVKL 404
                 E+ +I   +   +        ++ +               A++   R     +  
Sbjct: 811  PTSAAESEAIVHIMESMVGGVSHFSLDSGRTDMDAGSEDWSFGDFAVLFRTRIQLPPLTE 870

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L R GI   +     L        L S +  I +    + +  ++  P    G      
Sbjct: 871  ALDRSGIPYQVVDKKRLVDHPGVEELLSYIRLINQTGTDLDLLRIMNFPKRGIGDKTIET 930

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
             R           G      +++   +         +N+      S      +    +L 
Sbjct: 931  LRTW---------GESQGKSLIEALEVARRLPLPGLSNSQQIKLHSVWKTITEARKKILD 981

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
              + + +  L+     +     +                                 G+T 
Sbjct: 982  LPLPEALEHLMYTIPLEPLYTRSG-------------------------------NGRTA 1010

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
            S+    + +       +   + D++    D +T++P+      + ++    ++ L F  +
Sbjct: 1011 SACILDMAQDFDG---DLGRFCDMVNLASDADTLEPEA---DRVSLMTMHAAKGLEFRGV 1064

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSL 703
             + G  +G+ P                           +    +       R L  T + 
Sbjct: 1065 FVTGCEDGLIPYFREG---------------KESDPEEELRLFYVALTRAQRRLWLTYAK 1109

Query: 704  RENNIP----TIASRWLQRLLVL 722
            R            S +L R+   
Sbjct: 1110 RRRMFGKVISQQPSPFLTRIKEE 1132


>gi|320539382|ref|ZP_08039051.1| DNA-dependent ATPase I and helicase II [Serratia symbiotica str.
           Tucson]
 gi|320030507|gb|EFW12517.1| DNA-dependent ATPase I and helicase II [Serratia symbiotica str.
           Tucson]
          Length = 720

 Score = 82.3 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 70/690 (10%), Positives = 162/690 (23%), Gaps = 119/690 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP---VS 104
              T +A  E+R     + G          I +   +      A   +  NL      + 
Sbjct: 60  VTFTNKAAAEMRHRIEHVLGTSQGGMW---IGTFHGLAHRLLRAH-HMEANLPQDFQILD 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +  +L  L R++                                           + E  
Sbjct: 116 SDDQLRLLKRIVNALNIDEKQWPPRQAMWYINGK---------------------KDEGL 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
           + + +    N     W            + + E              +            
Sbjct: 155 RPQHIETYNNPVETTWLR--------IYQAYQEACDRAGLVDFAELLLRAHELWLNKPHI 206

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     +++     +       +  +A   +  +++   D       W     ++ 
Sbjct: 207 LNHYRERFTNVLVDEFQDTNSIQYAWIHLLAGSNSNVMIV--GDDDQSIYGWRGAQVENI 264

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +                            G  +  +       S      +T   
Sbjct: 265 QRFLKDFP--------------------------GAKTLRLEQNYRSTSNILEAANTLIA 298

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397
            N   +   +         +++  A NE +EA  +   ++   D        A++     
Sbjct: 299 HNAGRMGKNLWTDGGQGEPISIYCAFNELDEARFVVNRIKTWQDNGGTLNDCAILYRSNA 358

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L +  ++  I  G             + L  I   ND  A   +V  P    
Sbjct: 359 QSRVLEEALLQAAMSYRIYGGQRFFERQEIKDALAYLRLISNRNDDAAFERVVNTPTRGI 418

Query: 458 GFPEKYL-SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
           G     +  +A    +L   R  +      +L    +                  L+ E 
Sbjct: 419 GGRTLDVVRQAARDRQLTLWRATR------ELLHEKVLAGRAASALQRFTELVDSLAHET 472

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            E+ + +    +   + L      +    G   I +  +L     Q    +E +      
Sbjct: 473 AEMPLHIQTDRVIRDSGLFIMYQQEKGEKGQARIENLEELVTATRQYSYQEEDQ------ 526

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                                   + +     ++                 + ++    +
Sbjct: 527 ------------------------DLMPLQAFLSHAALEAGEGQADAYQDAVQLMTLHSA 562

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + + G+ E           F S++   +      E+ +        M   T  
Sbjct: 563 KGLEFPLVFIVGMEE---------GMFPSQMSLDESGRLEEERRLAYVGVTRAMQKLTLT 613

Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
              TR L    +    SR++  L      +
Sbjct: 614 YAETRRLYGKEVYHRPSRFIGELPEHCMEE 643


>gi|318040196|ref|ZP_07972152.1| exodeoxyribonuclease V gamma chain [Synechococcus sp. CB0101]
          Length = 950

 Score = 82.3 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 103/878 (11%), Positives = 227/878 (25%), Gaps = 60/878 (6%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
             LL   L    R +P  P  L  + + V T    + L  +     G             
Sbjct: 10  AELLAQVLAAQLRLEPPGP--LEQIQVVVNTWPTSRWLGEQIATGNGAGIAANLRFPFPT 67

Query: 83  D----VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
                VV++   +      +     + +  LLEL   +L      P        +    L
Sbjct: 68  SQLRQVVDQWLGSSPAPGPDPWRAQNLVWPLLELLPPLLEQPEAAPLQRWLQQRQGHSQL 127

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKW--EDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                    LA+ +AD ID             L     +  G        +  +  +   
Sbjct: 128 RQLDRPLWQLARAIADAIDDYGLYRPAMLEAWLQGQAVDSRGQPLPPELLWQPLLVQRLA 187

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
           E L      +     +AL+R   +     +    P+ + G +   P    L+  ++    
Sbjct: 188 EALPGE---AFGLRALALIRRLQQGWRPDSTNPQPLRLFGLSSLAPVQVELLQAISACQA 244

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNIT-----SSNTTYSTHPQYSLAKLLDFLD----I 305
             + L      +        +    +                      +LL+        
Sbjct: 245 VELYLLTPCRDLWQRRDAAGSRDPLSSDWLLEVPGLEARFGRLGAEFQQLLEGSGENQLG 304

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
           +  +       +     +    +      +       D             S +      
Sbjct: 305 EWREGDLFFAPAAVAVEQGRTPTLLEQLQERLASGAADGEATDALQADPGDSSLEFHACP 364

Query: 366 NEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDI 415
               +   +   L   L  +     +   ++T        +   +      T   +   +
Sbjct: 365 GRLRQLQVLRDRLLQLLAADPKLEPRDILVMTPQVEAFAPLVGAVFGDSGATGVQLPWRL 424

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALEL 473
           +     S    S  L  LL    +     A+  L+     L   G      +     L+ 
Sbjct: 425 TDRSQQSEAGISQGLLELLQLGGERFTASALERLLACTPLLTAQGLEGDDAAAISRMLQE 484

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHILQCI 531
              R   +  D     +  L+    +     V      ++  D     +   ++   + I
Sbjct: 485 AGFRWGLDGRDRGGDGTHSLEWALDRLVLGLVLPQLPGMAPGDCAPLAMEGSLEQQQRWI 544

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             L T            S + W +     LQ +  D   +   L       +        
Sbjct: 545 ALLRTLLEQLRWLAQPRSPAQWIEGLRPLLQALFGDGGERAWELQSLHAVLSDWK----A 600

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
           +   S ++  A    +++   +   + +    +S  L I      R +    ++L GL+ 
Sbjct: 601 VAQASELELAAPVVAELLGERLSEGSGRFGH-RSGALTISALEPMRAIPHKVVVLMGLDA 659

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN--NIP 709
           G +P+   +  F     Q  L    +            + +  +HL+ + S R+      
Sbjct: 660 GAFPRQRQRPGFHLLEQQRQLGDPNSGDQDRYV-LLESLLSARQHLLVSWSNRDERSGEA 718

Query: 710 TIASRWLQRLLVLGGTDFFDNLKK-------------RGQCYLDWTRKLDYTTKQPHYKR 756
             AS  +++ L     +      +                 +   +        +   ++
Sbjct: 719 LEASTPVRQWLEWLSRELPQLPLRVHCANPLERANFLPADPWPPASCDRRLLQARQQLEQ 778

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
               PP      +   S   + +  P   ++     ++       +          H ++
Sbjct: 779 GLSAPPARGLAFSAMPSPAAEPVASPEQAWSELRQWIEQPQRSWLEGLSLRPREFDHPVL 838

Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                +   +   E   L++Q +D   E     P I+ 
Sbjct: 839 DRDALELGER---ERAALLRQQLDPLPEALPDWPLIER 873


>gi|255994126|ref|ZP_05427261.1| hypothetical protein GCWU000322_00188 [Eubacterium saphenum ATCC
           49989]
 gi|255993794|gb|EEU03883.1| hypothetical protein GCWU000322_00188 [Eubacterium saphenum ATCC
           49989]
          Length = 1097

 Score = 82.3 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 72/229 (31%), Gaps = 32/229 (13%)

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
            S + I+ L   P+  +  R + +          D   RG ++H I+ E+     N    
Sbjct: 771 MSPTGIESLGACPFRYFLDRGVGVC--EEKTDSLDPRRRGEIYHKILEEVALYIANTAKR 828

Query: 830 EINHLMK----------QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE----EKIQ 875
             N L+            I+D   + E                   ++   +    E   
Sbjct: 829 NENGLLDFSNISKDDIKPIVDEVIKDEITRIQNPQDEYRCLCIAKKAYHASQDILSELKA 888

Query: 876 SSIEKIFVNIPA-------KMAIESIG---IHLTGFADRIDLLKSGFVDITDYKTGDNPK 925
             I  +              + +       ++++G  DR+D+  S    I DYKT DN  
Sbjct: 889 GDIVSVMPEEKFKDGQRISSIKLRGRENLNVNISGKIDRVDVFASRKTRIIDYKTFDNKL 948

Query: 926 KETAQ-KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
                     PQL +   A+        +  +  +LFY ++ +  K   
Sbjct: 949 NTNILNDDWKPQLLIYLMAV-----LNDENLEFGSLFYKKITKDVKPGA 992


>gi|312874165|ref|ZP_07734199.1| putative ATP-dependent nuclease subunit B [Lactobacillus iners LEAF
           2052A-d]
 gi|311090235|gb|EFQ48645.1| putative ATP-dependent nuclease subunit B [Lactobacillus iners LEAF
           2052A-d]
          Length = 1157

 Score = 82.3 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 102/891 (11%), Positives = 238/891 (26%), Gaps = 135/891 (15%)

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
           DL+++ +E            L+I    + + L +    +       +++   +  +    
Sbjct: 138 DLNSISHEAVTEETNRKLHDLQIIYDEFIQMLGDH--FTTKDGIQLILKTVLDKKLSIDN 195

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
                 G +    +   ++  +A   N ++                  +   N       
Sbjct: 196 MNFFFCGFSYFSLSELNIVKIIAKKANLSVFAF------------KTKDAQINDKVMEGD 243

Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
           Y    Q ++AKL++F ++            N        ++  +                
Sbjct: 244 YDYIVQSTIAKLINFFNVNSLKFSTKEYGYNINLNNKEKLNAIWTENI------------ 291

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL 404
                    + V LI+AD+   E   +A  +   +       K   ++  + +       
Sbjct: 292 -PQQGLDLTNYVHLIKADSRYAEINFVAQTIYQQVVFNHYRYKDFLVLAPNLSEYETYLT 350

Query: 405 -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPE 461
              ++  I++       +       ++ ++ +          I T++K  L   ++   +
Sbjct: 351 PIFSQNNISMFNDLQKQMKFHPLVVMIENIADINDMGFKTQDIITILKTRLLIPEWYTDD 410

Query: 462 KYLSRAKNALELVALRGNKNSYDI----MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                  + LE   L  N N         D     +  +              +   E+ 
Sbjct: 411 IKFIADVDLLENFVLAHNINHQLWKKSFYDFVDNNISHLDQINEKVEKLDKLRQFIIENI 470

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +  +  +  +      +  +         N  +  W        +N  ++          
Sbjct: 471 DNLITQLHKLTNVQEAVTLFWNFLLKNKINKKLEKW--------RNTAINNGDLQLAQQP 522

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           E+    L+ L    +      + N   + DI+                  + +      +
Sbjct: 523 EQIWALLNKLLKDYVLIAE--EFNTENFFDILISGFSEANFSQIPSVLDAVTVSEIGMVQ 580

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY-----------IGQAAH 686
             +F  + + G      PK   K  FL+    ++LN   A++            + Q   
Sbjct: 581 NNSFKQVFIIGAVNNSLPKIQNKPGFLNIENINELNSSIADEQQYIENNQEVNNLDQTYQ 640

Query: 687 DFEMANGTRH-LIYTRSL-RENNIPTIASRWLQRLLV--LGGTDFFDNLKKRGQCYLDW- 741
             ++ +     +  +  +   +N    AS + Q +            +L +  Q  L + 
Sbjct: 641 FGDVLSLASDGVYISYPIINVSNEKMEASIFYQDIKNTLNLTEYVQHDLPENQQQLLSFI 700

Query: 742 -------------------------------TRKLDYTTKQ-------PHYKRPKPFPPL 763
                                             L     Q       P    P     L
Sbjct: 701 TTPQASLGYIVYLKNKTNDDISNLLALTPSNQALLFDNVIQASSFKNKPVNLTPALAQEL 760

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                  S S+++    + Y  +    L L     F+ +      G  +H  +  L+K  
Sbjct: 761 YGNNINISISQLETFYANSYEYFLTYGLHLHKR--FENELTNIQSGNYYHETMDRLVKYL 818

Query: 824 INKNTP------EINHLMKQIIDSHFE-----KENLPPHIDIIWRHLFHKISHSFLE--H 870
                       +   ++   I    +     +E L    +        + +   +   H
Sbjct: 819 KQHKLDFAELTKDKLSVILANIQDELKTKGSYRELLGDPFNEFLFKCLDRTTKKVVNYWH 878

Query: 871 EEKIQSSIEKIFVNIPAKMA--IESIG------------IHLTGFADRIDLLK--SGFVD 914
           +   Q+    ++  +       I  +             I L G  DR+DLLK     + 
Sbjct: 879 QNMFQTKFCPLYSELSFGNKEYIAGLSYQFIDKQQKTHHISLRGKIDRVDLLKDCDNEIL 938

Query: 915 -ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG-SFSQIDCRKVANLFY 962
            + DYK+          +  I  Q+    + L+        +   +   FY
Sbjct: 939 QLIDYKSSAKKFDFNLFKNGISMQMLSYLSVLQDNSHIFSTNPVNIFGAFY 989


>gi|148550460|ref|YP_001270562.1| DNA-dependent helicase II [Pseudomonas putida F1]
 gi|148514518|gb|ABQ81378.1| ATP-dependent DNA helicase UvrD [Pseudomonas putida F1]
 gi|313496365|gb|ADR57731.1| UvrD [Pseudomonas putida BIRD-1]
          Length = 728

 Score = 82.3 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 59/696 (8%), Positives = 168/696 (24%), Gaps = 123/696 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+R    ++ G     +  + +   +      A                  
Sbjct: 63  VTFTNKAAAEMRQRIEQLLGINPAGM-WVGTFHGLAHRLLRAHWQE-------------- 107

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
              ARL+  ++    D  + L     +   +      W A+     I+  + E  + + +
Sbjct: 108 ---ARLVQNFQILDSDDQQRLIKR--VMRELGLDEQKWPARQAQWFINGQKDEGLRPQHI 162

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG---- 225
            A  +        L    ++     + +              +  +    +H        
Sbjct: 163 QAGGD--------LFLATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPGLLEHYQ 214

Query: 226 -TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                +++     +       +  +A    G  ++   D       W     ++ +  ++
Sbjct: 215 RRFRHVLVDEFQDTNAVQYAWLRLLAR--GGDSLMAVGDDDQSIYGWRGAKIENIHQYTA 272

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
           +   +                              +              +     N+  
Sbjct: 273 DFPDAEMI--------------------------RLEQNYRSTGGILKAANALIANNSGR 306

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRV 402
           L  ++         + L  A NE +EA  +   +   + +   + + A++      +R +
Sbjct: 307 LGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSRVL 366

Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
           +  L R  I   I  G             + L  I    +  A+  ++  P         
Sbjct: 367 EEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVP--------- 417

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                                     + +    +   + +          +      A  
Sbjct: 418 -------------------------PRGIGEKTVEAIREHARHSQLSMWEAMCQLLAAKA 452

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
           L       +   +       +   ++ +             +              E+G+
Sbjct: 453 LKGRAASALGAFIELIEGLAAKVVDMPL------HTMTQTTIEQSGLITYHQEEKGEKGQ 506

Query: 583 TLSSLFSKIIETGS-----CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                  +++            A+       +             E   ++ ++    ++
Sbjct: 507 ARVENLEELVSAARNFESTDEDADLSPLSAFLGHASLEAGDTQADEHEDSIQLMTLHSAK 566

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RH 696
            L F  + L G+ EG++P                ++L+   +   +    +       R 
Sbjct: 567 GLEFPYVFLVGMEEGLFP--------------HKMSLEEPGRLEEERRLAYVGITRAMRQ 612

Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
           L+ T +       +     + R +          ++
Sbjct: 613 LVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVR 648


>gi|299771291|ref|YP_003733317.1| ATP-dependent DNA helicase rep [Acinetobacter sp. DR1]
 gi|298701379|gb|ADI91944.1| ATP-dependent DNA helicase rep [Acinetobacter sp. DR1]
          Length = 679

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 84/690 (12%), Positives = 184/690 (26%), Gaps = 114/690 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +T    T +A +E++    ++  ++ +    + +           +L    NL      
Sbjct: 53  RITAMTFTNKAAREMKERVTKLLSREESKGLSVSTFHTFGLNLLRLELK---NLP----- 104

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                    L   +     D  K +  +      +S A +  L   +A  +  I      
Sbjct: 105 ---------LKANFSILDADDCKRILMDLMHRDNLSGAESKEL---IAKAMKKIS----D 148

Query: 166 WEDLHALKNEKYGMWWLLAAD--FLKIASKYWTERLVELNASSPVGY-----QIALMRAE 218
           W++   L   +         +        + +   L   NA           ++    AE
Sbjct: 149 WKN--DLIVPEQAHSTCETPEDVQFAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAE 206

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +  A   L+  +             D       W     ++
Sbjct: 207 VRDKWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMG--QFTAVGDDDQSIYAWRGAKPEN 264

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
             +   +                 L I + +                  S+     +   
Sbjct: 265 MALLKQDFP--------------NLQIIKLEQNY------------RSTSRILKAANCVI 298

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITAD 395
             N  I + K+ + +     + +I   N+ +EA  +   L      N K     A++   
Sbjct: 299 QNNPHIFDKKLWSDKGHGEVIRIITCRNDDDEAERVVKDLLTHKLMNGKNWKDYAVLYRG 358

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              AR ++ +L +  I   +S G           + S L  I    D  A   ++  P  
Sbjct: 359 NFQARVLETQLRQMQIPYKLSGGTSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKR 418

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G          +    ++                +L   A Q+ +  +P        E
Sbjct: 419 AIGPVTLEKLGLFSQENNLS----------------LLGASADQRLSMVLPKKAETQLHE 462

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             +        +L+   P+   +   N       + +                 ++   L
Sbjct: 463 FADFIATFTRELLEDDEPVPKVRQMMNEAGYMDYVRE-----------QSATPAQEKSKL 511

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              E   T         E        ++    ++  L++ +    + E +  + +L    
Sbjct: 512 DNIENLFTSIQNLINRAEDVDEKNIESVIRKLVLLDLLEQQ---QEEEDTDKVNLLTLHA 568

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + + GL E + P   +                 AE    +    +      R
Sbjct: 569 AKGLEFPYVYIMGLEEELLPHKNSI---------------AAETIEEERRLMYVGITRAR 613

Query: 696 H-LIYTRSLRENNI----PTIASRWLQRLL 720
             L  T + +  N         SR+L  L 
Sbjct: 614 QGLTLTLAEQRKNGGQMKQMTPSRFLDELP 643


>gi|81299761|ref|YP_399969.1| hypothetical protein Synpcc7942_0952 [Synechococcus elongatus PCC
           7942]
 gi|81168642|gb|ABB56982.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 263

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 58/184 (31%), Gaps = 21/184 (11%)

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
              S + ++       A Y R   +L            T  GT  H  + +  +      
Sbjct: 3   YRLSATRLQTYHRCAQAYYWRYEQRLPGP----AGFGNTALGTSLHRCLAQFHRDWSGLE 58

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI-EKIFVN-- 884
                  +           N              +I  ++ +     +++    + V   
Sbjct: 59  PQPPIAWLADCWQQAATALNAEQQHQGW------QILETYYQQHILTKATWTRPLAVEGR 112

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETAQKLIDPQLSLEA 941
           I A + +E I   +TG  DR+DL + G + + DYK+      P         D QL L  
Sbjct: 113 IQATLVLEEIEFLVTGRYDRLDLEEDG-LHLVDYKSSQRFDPPSSSQI----DVQLGLYQ 167

Query: 942 AALK 945
            AL+
Sbjct: 168 LALE 171


>gi|167847823|ref|ZP_02473331.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei B7210]
          Length = 639

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 165/683 (24%), Gaps = 107/683 (15%)

Query: 34  FRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP------------IIKSL 81
                  P  +A+VT    T +A  E+R    ++   K+   P             + + 
Sbjct: 42  IEAKGFEPRHIAAVT---FTNKAAAEMRERVGKLLEGKTLTTPGKEGRKVPVNQLTVCTF 98

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             +  +    +                          +     D    +  E   +    
Sbjct: 99  HSLGVQILRQEAEHVGLKP-----------------QFSIMDSDDCFGMIQEQIGTTDK- 140

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 L + +  II + +      E+  A+           A        + +   L  
Sbjct: 141 -----GLIRKIQTIISLWKNGLVAPEE--AMTIAANEDEHQAAL-----VYRNYVATLHA 188

Query: 202 LNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             A              A +       +     ++I     +      L+  +A     A
Sbjct: 189 YQAVDFDDLIRLPTELFARNEPVRDRWQNRLRYLLIDEYQDTNACQYELLKLLAG--PRA 246

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                 D       W   T ++      +              +  L+       R+   
Sbjct: 247 AFTAVGDDDQAIYGWRGATLENLAQLGKDFP---------KLHVIKLEQNYRSTVRILTA 297

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +N +   +  + +  L  +                       + +   ++E  EA S+  
Sbjct: 298 ANNVIANNPKLFEKKLWSEH-----------------GMGDSITVTPCNDEEHEAESVVF 340

Query: 377 ALRMS---LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            L           +  A++      AR  +  L R  I   +S G           L + 
Sbjct: 341 RLSAHKFERRTQFRDYAILYRGNFQARVFEQVLRRERIPYVLSGGQSFFDKAEIKDLCAY 400

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L  I   +D  A    V  P    G        A      V+L        I       L
Sbjct: 401 LRLIANADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGI----EARL 456

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                +         Q      DKE A +++D +++ I          +         + 
Sbjct: 457 SARQVEPLRIFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNV 516

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +      +     E             +      ++       +       + +I  + 
Sbjct: 517 LEFLEWLKRKGTKPE------------AEQAVDGEAEGFHNADGLADTGKNLLGLIQTVA 564

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               ++ K E    + +     S+ L +  + L G+ EG+ P +   +            
Sbjct: 565 LMSMLEGKEEDPDAVRLSTVHASKGLEYPHVFLVGVEEGIMPHSGGSDD----------G 614

Query: 674 LKTAEKYIGQAAHDFEMANGTRH 696
               E+   +    +      + 
Sbjct: 615 PIDDERIEEERRLMYVAITRAQR 637


>gi|188579188|ref|YP_001916117.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523640|gb|ACD61585.1| DNA helicase II [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 728

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 65/710 (9%), Positives = 163/710 (22%), Gaps = 120/710 (16%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E+R         G +      I +   +           +        + +
Sbjct: 60  VTFTNKAAGEMRHRTDLQLRNGSRGMW---IGTFHGLAHRLLRLHWQDARLPEGFQVMDS 116

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R++                                       I+  + E ++
Sbjct: 117 DDQLRLVKRVVQALELDESKYPPKQLSWW---------------------INEQKDEGRR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +      +    W             + ER             +       +     
Sbjct: 156 PQHIQ----PEPNDDWTEVRRQ---VYAAYQERCDRSGLLDFAELLLRAHELLRDTPALL 208

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A       V    D       W     ++  
Sbjct: 209 AHYRARFREILVDEFQDTNAIQYAFVRVLAGESGN--VFVVGDDDQAIYGWRGAKVENVQ 266

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G  +  +       +      +     
Sbjct: 267 RFLKDFP--------------------------GAQTVRLEQNYRSSANILGAANAVIAH 300

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA  +    R  + +     + A++      
Sbjct: 301 NPDRIGKQLWTDSGDGDPIDLYAAYNEVDEARYMVERARQWVRDGGSYGELAVLYRSNAQ 360

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L    +   +  G+            + L  +   +D  A    V  P     
Sbjct: 361 SRALEEALISAQLPYRVYGGMRFFERAEIKDALAYLRLLTNRSDDAAFERAVNTP----- 415

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        +    LD +        +  W++ +    + 
Sbjct: 416 --------------------------TRGIGDRTLDEVRRLARANALSLWEAAMLCTQQN 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                  + L     LV     +          D   +     ++   +    L +    
Sbjct: 450 TLAARARNALATFLSLVGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGLDSESRT 509

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E    L S+ S+             E +  +                  + ++    ++ 
Sbjct: 510 ENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGMQLMTLHSAKG 569

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
           L F  + L GL +G++P   +              L+ + +   +    +      R  L
Sbjct: 570 LEFPIVFLVGLEDGLFPSARS--------------LEESGRLEEERRLAYVGITRARQKL 615

Query: 698 IYTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
           +   +        +   + SR+L+ +      +    ++      L   R
Sbjct: 616 VLCYAESRRIHGQDNYNVPSRFLREIPRDLLHEVRPKVQVSRTASLGAAR 665


>gi|145222451|ref|YP_001133129.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK]
 gi|315442898|ref|YP_004075777.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1]
 gi|145214937|gb|ABP44341.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK]
 gi|315261201|gb|ADT97942.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1]
          Length = 780

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 93/730 (12%), Positives = 194/730 (26%), Gaps = 89/730 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T +A  E+R   + + G ++  +  + +              L   LN   S
Sbjct: 67  GQVLAITFTNKAAAEMRERVVGLVGPRARNM-WVSTFHSTCVRILRNQASLLPGLNSNFS 125

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                          R  L  I KD+  ++    P            LA+ I  ++ E  
Sbjct: 126 IYD--------ADDSRRLLLMIGKDMGLDTKRHSPRL----------LANSISNLKNELI 167

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             E   A  +E       + AD      +        L+    +G  +A+++A  +    
Sbjct: 168 GPEQAAAEASEAADDLARIVADVYGEYQRRLRAA-NALDFDDLIGETVAVLQAFPQIAQY 226

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANHPNG--------AIVLPGLDCHIPTAIWNTI 274
            +     I++     +  A   L+  +              A +    D       +   
Sbjct: 227 YRRRFRHILVDEYQDTNHAQYVLVRELTGSGATESDESVAPAELCVVGDADQSIYAFRGA 286

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
           T ++      +   +T            L+      + + N +N +  R+    +  L  
Sbjct: 287 TIRNIEDFERDFPSATTIL---------LEQNYRSTQTILNAANSVIARNAGRREKRLWT 337

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSA 390
           D  +                    +    ADNE +EA  IA  +    D          A
Sbjct: 338 DAGEGEL-----------------IVGYVADNEHDEARFIAQEIDALSDSIPDFSYNDVA 380

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           +     N +R ++    R GI   +  G+          + + L  +    D +++  ++
Sbjct: 381 VFYRTNNSSRAIEEVFIRAGIPYKVVGGVRFYERREIRDIVAYLRVLDNPGDAVSMRRIL 440

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P    G   +                         L        A + N   +     
Sbjct: 441 NTPRRGIGDRAEACVAVHAEN--------------TGLNFNDALVAAAEGNVPMLNTRSE 486

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
           +       L   L   +   +  LV    ++      L  S   +          L    
Sbjct: 487 KAIAGFVALLDDLRGGLDGELGDLVEAVLDRTGYRAELEASSDPQDLARLDNLNELVSVA 546

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
              +                  E           +++ ++ + D + +         + +
Sbjct: 547 HEFSTDLANARALAEGDEDAQDEDVPDTGV-LAAFLERVSLVADADDIPEHGS--GVVTM 603

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L F  + + G  +G++P   A    L    +  L      +   +       
Sbjct: 604 MTLHTAKGLEFPLVFVTGWEDGMFPHMRALGDPLELSEERRLAYVGITR--ARQRLYLSR 661

Query: 691 ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT-RKLDYTT 749
           A         RS     +    SR+L+ +        +   +     +         Y T
Sbjct: 662 AK-------VRSSWGQPMLNPESRFLREIPQELID--WRRTEAPASSFSAPVGNAGRYGT 712

Query: 750 KQPHYKRPKP 759
            +P   RP  
Sbjct: 713 PRPSPTRPAA 722


>gi|330991806|ref|ZP_08315755.1| ATP-dependent helicase/nuclease subunit A [Gluconacetobacter sp.
            SXCC-1]
 gi|329760827|gb|EGG77322.1| ATP-dependent helicase/nuclease subunit A [Gluconacetobacter sp.
            SXCC-1]
          Length = 1194

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 86/837 (10%), Positives = 188/837 (22%), Gaps = 119/837 (14%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-------HLMKGTKGPIIIAG 234
                   +   + +  R                ++   +       + + G    +++  
Sbjct: 363  CALLSVAQPVLERYATRKSAQGMVDYDDLIDRTLQLLDDPGAAWVLYKLDGGIDHLLLDE 422

Query: 235  STGSIPATARLMSTVA-----------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
               + P    +   +            +      +    D       +     ++     
Sbjct: 423  VQDTSPDQWAIAGGLTAEFFAGEGTHDDEGCPRTIFAVGDYKQSIYSFQGADPEAFRAWR 482

Query: 284  SNTTYSTHPQYSLAK----LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                       +L +     + F              +N    R +V  +  +P   +  
Sbjct: 483  QRFRRRAGAAQALWREPALTVSFRSTAPVLKLVDSVFANPAAARGVVEPEGGIPAHVTAR 542

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNERE--------------EAISIAIALR------ 379
                      P +    S + +      R                A  IA  LR      
Sbjct: 543  PGQGGRVEIWPPVPVEASGMDVSPWMAPRHNAGQSTAQQRLADTLAGWIAAQLRKAPAPG 602

Query: 380  MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
             +         L+      AR +   L    + +       L+  L    L +L  A+  
Sbjct: 603  EAALAPGDVLILVPRRSAFARALIRALKTHDVPVATLVRTVLTDQLAVRDLMALCAALLL 662

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRIA 497
              D + +A ++  P+                       LR              +L+ + 
Sbjct: 663  PQDDLTLACVLTSPIGGLDDDSLMPLATGRNGQPLWAVLRARHAERPDWAAAWHILNTLF 722

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
             Q +        +         A LL     + + P+    +         +IS      
Sbjct: 723  RQVDYATPYQLLAEALGPLGGRARLLARLGPEAVEPVDELLSAALRFEEAHAIS------ 776

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                         +    W     +T+             + A+  + +     ++    
Sbjct: 777  ------------LQGFLHWLNASDETVRHEPDASANMVRVMTAHGAKGLQARLVILPDT- 823

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                        I        + +    + GL+  VW         ++  +Q  + L  A
Sbjct: 824  ------------IATPRSDTNILWAADDVTGLDIPVWVPRRELATDVTAGLQEQIRLNAA 871

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL---GGTDFFDNLKKR 734
            E+Y          A  +  L+         +P      L R            FD   + 
Sbjct: 872  EEYNRLLYVALTRA--SDRLVICGWEPGRGVPDGCWYDLCRQGFESAGATAQPFDLGWEG 929

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                L+  R               P  P+            + ++       AR +    
Sbjct: 930  ETLVLEEARVSSLPAAPSPCADHAPDRPVPLPDWMGHAPLWRPVMPVAEGPLARPLAPSR 989

Query: 795  F------------------------IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
                                                 RG L H ++  L    +++    
Sbjct: 990  PDDVALGPQPAVRSPLAAASTVRARADREASRARALQRGQLVHALLQYLPDCPVSRRAEL 1049

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
             +  + +          L P            +                      P    
Sbjct: 1050 ADAWLAR------PAAGLAPAQRGELVAQVLAVMDQ----PALAALFAPGSRAEQPLAGV 1099

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL--IDPQLSLEAAALK 945
            +      + G  DR+ +   G V + D+KT  +P +   +       Q++   A L+
Sbjct: 1100 VGQQ--VIVGQVDRMAVDA-GTVTVCDFKTNRHPPQSIDRTPVLYLRQMAAYRALLR 1153


>gi|289582057|ref|YP_003480523.1| UvrD/REP helicase [Natrialba magadii ATCC 43099]
 gi|289531610|gb|ADD05961.1| UvrD/REP helicase [Natrialba magadii ATCC 43099]
          Length = 1194

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 101/871 (11%), Positives = 232/871 (26%), Gaps = 100/871 (11%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK----GTKGPIIIAGSTG 237
              A  F+  A + + E L E NA          +    +  ++         +       
Sbjct: 330  RRARAFVG-AYEAYLEALDERNAFDYDELIHRTVDLLRDERVRDDILAEWDAVYCDEFQD 388

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            +  +   L   V    +G  ++   D       W     ++ +    +            
Sbjct: 389  TDESQLEL---VEELRDGLDIMVVGDSDQAIHEWRGQDPENMSKLPESFEEIG------- 438

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                 LD+     + + +++  +      I     P   S +      E     +    S
Sbjct: 439  -----LDLNFRSRQPILDLATNLDPDKDEIEAYKEPNPPSVVTVDSEGERTPAQVSTTIS 493

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
             +              +        +   +  A++      AR +  +L R  I   +S+
Sbjct: 494  HL--------------LTGRFEDVPERELEDIAVLVRRNQNARDIASQLDRDSIPYTLSS 539

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK----NALEL 473
                        + S    + +  D ++   ++ H           L RA        + 
Sbjct: 540  DASGELGHGVRTVLSYFRVLVEPGDDVSWQRVLLHLYRVPEGDVDTLLRAGETVPAGYDA 599

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT- 532
            +A    +        ++L   +     ++TH      R  + +  +   L +H    +  
Sbjct: 600  LAEPAAELRCPDRVHEALTDYKTLRSVSDTHAISELYRHFKRETRIDWFLREHDRDALAN 659

Query: 533  -----------PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                       P+ +  T              +    T                  + +G
Sbjct: 660  VERLIEAFNDSPVQSELTPAFVDYLERQAHLLSADDETATSPGSQSADAVDVMTIHQAKG 719

Query: 582  KTLSSLFSKIIETGSCIKANAIEWI------DIITRLIDGETVKPKIEK------SSTLF 629
                ++    +            +       DI+   + GE   P          +    
Sbjct: 720  LDFDTVLLPFLTESEFGHITLANYQRDLYRYDILVDDVQGELADPLRADCSDDQIAEEWR 779

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD----LNLKTAEKYIGQAA 685
            +L    +R      L    + E     +   +   S   ++             +     
Sbjct: 780  VLHVALTRAKEHLFLFGNDVEEQGPGADMLDDHLPSERSETPIHWSAEGPRFSVWNALMD 839

Query: 686  HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL-GGTDFFDNLKKRGQCYLDWTRK 744
               E+A  T   +   +   N         +          +  + + +     +  T  
Sbjct: 840  SYDEIAADTPDAVRDYTDAVNRGVDEDPGTITYYQTEVSTDEALETVLEFADEVVAGTLA 899

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTY----SFSEIKQLINDPYAVYARRILKLDFIPHF- 799
               +   P+  R    P   +         S + ++ + N         ++     P   
Sbjct: 900  DGDSAASPNTARFADAPLGTSVDVELARQHSHTALESVRNCERKHVLDHVVDAFPDPTPA 959

Query: 800  ---KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
               + +  + D G+LFH++      +  +  T       + +  S      L P ++ I 
Sbjct: 960  TGGEAEVTQADVGSLFHDVAELAYWRGYDSKTEWREAC-EWVARSRDLTTALEPALECID 1018

Query: 857  RHLFHKISHSF--LEHEEKIQSSIEKIFVNIPAKMA-----IESIGIHLTGFADRIDLLK 909
            R+ F      +  +  E  I    ++I   +   +A     I +I   + G+ D +    
Sbjct: 1019 RY-FETDVPEWPAVGAEVPIAVDGDEIA-EVNGDIAAVDDGIAAIEGDIIGYVDSVRRHP 1076

Query: 910  SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969
             G + + DYKT     +         QL L   A +           +++  Y+ +    
Sbjct: 1077 DGGLVVLDYKT----SQAQKDLETSHQLELYVRACR-----DRFDEPLSHAGYVYVGDAG 1127

Query: 970  KIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
                     + +S DEL+      L ++ T 
Sbjct: 1128 PA------VQVFSVDELATLWESVLEDLATA 1152


>gi|149376496|ref|ZP_01894257.1| DNA-dependent helicase II [Marinobacter algicola DG893]
 gi|149359163|gb|EDM47626.1| DNA-dependent helicase II [Marinobacter algicola DG893]
          Length = 721

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 65/557 (11%), Positives = 148/557 (26%), Gaps = 98/557 (17%)

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG--------TKGPIIIAGSTGSIPAT 242
             + + +                L+R+    L +             I++     +    
Sbjct: 174 VYRQYEKLCNLSGLVDFGE---LLLRSHELWLHRPELLSHYQSRFQQILVDEFQDTNTIQ 230

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
              +  +A   N   +    D       W     ++      +      P   + +L   
Sbjct: 231 YAWLQILAG--NRVPLTVVGDDDQSIYGWRGAKIENIQQYQRDF-----PNARMLRL--- 280

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                                           +     N   L  ++    K    ++L 
Sbjct: 281 ------------------EQNYRSTQMILKAANAVIANNQGRLGKELWTDGKDGEPISLY 322

Query: 363 EADNEREEAISIAIALRMSLDEN--KKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            A NE++EA  IA  +   + E   + +SA++      +R ++  L R GI   +  G+ 
Sbjct: 323 AAFNEQDEANYIADTISSWVSEGNLRSESAILYRSNAQSRVLEESLIRQGIPYRVYGGLR 382

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
                      + L  +    D  A   +V  P                           
Sbjct: 383 FYDRQEIRNAIAYLRLVHYRRDDAAFERVVNIP-----------------------ARGI 419

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
            +  + D+++   +R              S    E  E  +       +  T L ++   
Sbjct: 420 GAKSLADMRAFATER--------------SISLWESAERLLEAGQVKGRAKTGLQSFMGI 465

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                  +  +    L  + L+   L   R        E+G+  +    +++   S  +A
Sbjct: 466 IERLTEMVDDASLHGLMKSTLELSGL---RDYHANEKGEKGQARAENLDELVNALSDFEA 522

Query: 601 N--AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                   + I +                + ++    ++ L F  + L G+ EG++P + 
Sbjct: 523 EEGVDPLSEFIAQAALDAGEAQAEVNEDCVQLMTLHSAKGLEFPLVFLAGVEEGLFPHS- 581

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQ 717
                        ++L+   +   +    +       + L+ T +             L 
Sbjct: 582 -------------MSLEEPGRMEEERRLAYVGITRAMQKLVLTYAESRRLYGQEKFHALS 628

Query: 718 RLLVLGGTDFFDNLKKR 734
           R +     D    ++ R
Sbjct: 629 RFVREIPGDCIQEVRLR 645


>gi|312170748|emb|CBX79010.1| DNA helicase II [Erwinia amylovora ATCC BAA-2158]
          Length = 723

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 78/709 (11%), Positives = 173/709 (24%), Gaps = 118/709 (16%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK--STILPIIKSLG 82
           +L   +      +  +P  + +VT    T +A  E+R    ++ G +        I +  
Sbjct: 41  VLVHRIAWLMEVENCSPHSIMAVT---FTNKAAAEMRHRIEQLIGTRQGGMW---IGTFH 94

Query: 83  DVVEEKFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
            +      A  L +        + +  +L  L RLI                        
Sbjct: 95  GLAHRLLRAHHLDARLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPARQGMWYINGKKD 154

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                +            IE+     E                         + + E   
Sbjct: 155 EGLRPMH-----------IESYGNPIE--------------QTWLR----IYQAYQEACD 185

Query: 201 ELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                      +                +     I++     +       +  +A     
Sbjct: 186 RAGLVDFAELLLRAHELWLNKPHILNHYRERFTNILVDEFQDTNNIQYAWIRMLAGDTGK 245

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            I++   D       W     ++      +   +                          
Sbjct: 246 VIIV--GDDDQSIYGWRGAQVENIQRFLQDFPAAE------------------------- 278

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
            +  +       +      +T    N   L  ++         +A+  A NE +EA  + 
Sbjct: 279 -TIRLEQNYRSTNNILKAANTLIANNNGRLGKELWTEDSDGEPIAIYCAFNELDEARFVV 337

Query: 376 IALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
             +++ +++       A++      +R ++  L +  +   I  G+            + 
Sbjct: 338 NRIKVWMEKGGALNDCAILYRSNAQSRVLEEALLQTSMPYRIYGGMRFFERQEIKDSLAY 397

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L  I   ND  A   +V  P    G     + R                      + L L
Sbjct: 398 LRLISNRNDDAAFERVVNTPTRGIGDRTLDVVRQTARE-----------------RQLTL 440

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
            + A                 ++K LA      + +    + +     +    ++     
Sbjct: 441 WQTARA-------------LLQEKALAGRAASALQRFTELVDSLAQETSDMPLHVQTDRV 487

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            K +   L        +    +   EE    +  +S   E    +   A      +    
Sbjct: 488 IKDSGLWLMYEQEKGEKGQARIENLEELVNATRQYSYQDEDEDLMPLQAFLSHAALEAGE 547

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                         + ++    ++ L F  + + G+ E           F S++   +  
Sbjct: 548 GQADKWQ-----DAVQLMTMHAAKGLEFMQVFIVGMEE---------GMFPSQMSLEEGG 593

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
               E+ +        M   T     TR L    +    SR++  L V 
Sbjct: 594 RLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPVE 642


>gi|302340417|ref|YP_003805623.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301637602|gb|ADK83029.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
          Length = 1137

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 86/856 (10%), Positives = 198/856 (23%), Gaps = 148/856 (17%)

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIA 233
              +    + +      + +        +        +R   E        K     I+I 
Sbjct: 292  PLFQELGEVIDRFRSSYEQEKRMTGIVTFRDVPAMAVRLLEEDPEFRSSWKHAFRYIMID 351

Query: 234  GSTGSIPATARLMSTVANHPNGAI-------------VLPGLDCHIPTAIWNTITEKSTN 280
                +     +L+  +A  P                 +    D       +         
Sbjct: 352  EFQDNNDLQRKLLYLLAERPERMEKGVPRADELVPGKLFFVGDEKQSIYRFRGAEVGVFK 411

Query: 281  ITSSNTTYSTH---PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                    +           +    L     D         +    +     S       
Sbjct: 412  RLGEELVSAGGVSLDLSRNYRSEPALIGFFNDFFPRVFADADRSYEARFRPLSSREKTEG 471

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----------NKK 387
                  +      + ++               EA  +A  +R  +++          +  
Sbjct: 472  VSPRISLFYYPGSSEEEAL--------PAPEAEAWYLARRIREMVEKKELTIAGGAADYG 523

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
              AL+          +    R GI   + +   L     +S    LL       D +A  
Sbjct: 524  DIALLMRSSGNQISFERAFRRLGIPYTVQSARALFLEAPASDFYQLLQLALYPEDRLAYF 583

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            +L++ P A            +      A         I+            ++       
Sbjct: 584  SLLRSPFAALSDDVIAAVMLREQEIHAAPFALDPDDPILG--------DEGERYRLAGQA 635

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
            W+    E D+     L+  +            N                           
Sbjct: 636  WRMVRQEADRVPISELIRRLWTGFGYRYAVLRNP-------------------------- 669

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                   L + +     + L  +  E               + +    E V+P  ++   
Sbjct: 670  --DYHVYLEYYDYLFEFALLADRRGENLVTF---LRFLRKNLGKYEKVEEVEPSRQEERG 724

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF---------------------LSR 666
            + I+   +S+ L F  + + G       ++   +PF                      + 
Sbjct: 725  VRIMSIHKSKGLQFPVVFVAGCGSTGRREHEGASPFQLHPELGVTLSAPSRERKSGKANF 784

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYT-RSLRENNIPTIASRWLQ------- 717
              +  L L+  ++        +  A     HL ++    R N       R+         
Sbjct: 785  FYRQGLELENEQEVAELKRLLYVAATRAECHLFFSGYHGRSNRKMDGLGRFALLNWIGKG 844

Query: 718  --------------RLLVLGGTDFFDNLKKR-------GQCYLDWTRKLDYTTKQPHYKR 756
                             +           +R       G    +   +            
Sbjct: 845  FGAESDQWECDPAFESHIEIIPPVTIEEIERNVVSKRQGPPLPEAAEEYRKAEILAFPAP 904

Query: 757  PKPFPPL--EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
             + F P    A     S  ++  L        +   L +D     ++       G+L H 
Sbjct: 905  VEAFSPSLVSAAISRLSVPQMADLKGQRDLSASDSELPVDRYLGGEERITA--FGSLCHR 962

Query: 815  IITE-LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
            +I E + +  +  +  ++    + + D       +      + R             E++
Sbjct: 963  LIEEGITQGVVKGDVRDLPTPFRALSDKA--SSLILDTAVDLARSFMDAPFGRLARQEQQ 1020

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFAD-RIDLLKSG--FVDITDYKTGDNPKKETAQ 930
               S+ ++       + +   G  + G  D  ++    G     + D+K+     +    
Sbjct: 1021 AGGSVSEVAF-----LFLTPAGRFVDGSIDLLLERGPDGGAEAVVVDFKS----DRGDDP 1071

Query: 931  KLIDPQLSLEAAALKA 946
            +   PQL++   A   
Sbjct: 1072 EHHLPQLAMYREAASH 1087


>gi|300870846|ref|YP_003785717.1| hypothetical protein BP951000_1227 [Brachyspira pilosicoli 95/1000]
 gi|300688545|gb|ADK31216.1| hypothetical protein BP951000_1227 [Brachyspira pilosicoli 95/1000]
          Length = 261

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 75/271 (27%), Gaps = 39/271 (14%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR-TDRGTLFHNIITELIKKRINK 826
            + +S   +   +  P       I        +K+  +     G   H    E  + R  +
Sbjct: 7    QRFSEYSMSTYLLCPRKYRYTYI--EKPFKKYKRGVNVYFIFGNAIHLACKEFYQLRAEE 64

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK-----ISHSFLEHEEKIQSSIEKI 881
             T +    +  I    +++  +    +              +  +F              
Sbjct: 65   RTLDS---LHNIFREVWKRSGIRSFFNSREEEKELGEKGLYMLSNFFNS----FGQKVPY 117

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN----PKKETAQKLIDPQL 937
             +    +  I      L G  DRIDL   G + I DYKT             ++    QL
Sbjct: 118  QIESYKETKI--KDYILFGRIDRIDLSADGSLQIVDYKTNKYYDLGEDNTERER-KTLQL 174

Query: 938  SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
             L A  L + +F       V N  Y      F  D          + +   +    +I  
Sbjct: 175  KLYAFILDSLNFK------VTNGSYYH----FDEDKFDTIDFTKESIQYIGEWFDEIIND 224

Query: 998  VTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            +      ++ F   +          +++ + 
Sbjct: 225  IRY----DRGFDKRVGTH---CEFCDFNKIC 248


>gi|298246492|ref|ZP_06970298.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
 gi|297553973|gb|EFH87838.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
          Length = 837

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 70/689 (10%), Positives = 167/689 (24%), Gaps = 95/689 (13%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R    ++ G  ++    I +   +       +      L      
Sbjct: 57  HILAVTFTNKAAREMRERMEKLVGVSASKDMSIGTFHAICARVLRMEADALLPL-----G 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           + R   +        + +   I++L  +  L  P            +   I   + E   
Sbjct: 112 LNRSFVILDTDDQL-SLVKQAIRELNLDEKLYRPN----------AIHGQISRAKNEMLG 160

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            + +     +                 +        ++    +     L R E E L + 
Sbjct: 161 PDQMAEQARKYSEEVAARVYK----VYQRLLRANNSVDFDDLLMLTEQLWRREPEILQRY 216

Query: 226 TKG--PIIIAGSTGSIPATARLMSTVA-----NHPNGAIVLPGLDCHIPTAIWNTITEKS 278
            +    I +           +L+  +             V    D       W   + ++
Sbjct: 217 QRHWQYIHVDEFQDCNLPQYKLIRLLGSGTADRQEGLRNVCVVGDDDQMIYTWRGASAEN 276

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +                                  +                  
Sbjct: 277 VVRFERDFP--------------------------HTKVILLEQNYRSTQNILDAAQEIV 310

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITA 394
            +N    +  +   Q     + + EA NE  E    A  +   L       +   A++  
Sbjct: 311 QQNRLRKQKNLWTAQGQGEKITIYEAFNEEMEGQFTAHEIIRLLARGDVGGRGDIAVMYR 370

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++ +  R  I   +              + + L  +   +D ++   +V  P 
Sbjct: 371 TNAQSRALEEQFLRMNIPYKVIGSRKFYERKEIKDMIAYLRLLANPHDDLSFERIVNVP- 429

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                         I +LK     +  +           + L  
Sbjct: 430 ----------------------NRKIGPKTIGELKKWTKQQGISLYEAVQRVEKHTTLGT 467

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             +         I+   + +      +        I++ T        N   +  R    
Sbjct: 468 AARNSLQNFSKLIVDLQSAVEELPLPE----LLDRIAERTGYGPELRANAEEELDRWANV 523

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           L      +  S + + +           +   D      +G  V  +   + ++ ++   
Sbjct: 524 LELRRVAEDYSEIETPVALELFLENVALVGGADTAQTSENGALVNEEQ--NDSVTLITLH 581

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L +  + + G++EG  P + + N       +  L      +           A   
Sbjct: 582 AAKGLEYPVVFIVGMDEGSLPHSRSINTPEELEEERRLAYVGFTR--AMKRLYLVRARR- 638

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLG 723
                 RSL      T  SR+L  + +  
Sbjct: 639 ------RSLWGETQYTEPSRFLSDIPLHL 661


>gi|72383505|ref|YP_292860.1| ATP-dependent DNA helicase Rep [Prochlorococcus marinus str.
           NATL2A]
 gi|72003355|gb|AAZ59157.1| ATP-dependent DNA helicase, Rep family [Prochlorococcus marinus
           str. NATL2A]
          Length = 805

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 71/724 (9%), Positives = 184/724 (25%), Gaps = 123/724 (16%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             +S+     T +A +E++     +  K+ + L   K    +   +      +   ++  
Sbjct: 55  DPSSILAVTFTNKAAREMKDRLELLLAKRLSSLTHGKPWTAL---QVAEQREIRNRIHRE 111

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +S    +     L         D  KD    +              A++L   I  I T+
Sbjct: 112 ISRELWIGTFHALFSRLLRFDIDKFKDPEGLTWTKQFSIYDET--DAQSL---IKEIVTQ 166

Query: 163 EKKWE-----------DLHA-----LKNEKYG--MWWLLAADFLKIASKYWTERLVELNA 204
           + + +            +       L  +              +    + + + L   NA
Sbjct: 167 DLQLDPKRFEPKKVRWAISNAKNQCLLPDDLSNNQEGQR-GKLVAETYRLYRKALAANNA 225

Query: 205 SSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA--------- 250
                      Q+     +           +++     +      L+  +          
Sbjct: 226 LDFDDLLLIPVQLLQQNEKIRTYWHSRFKHVLVDEYQDTNWTQYELIKQLVTNGKDPSSF 285

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
              N   V    D       +     +       +    +      + L+          
Sbjct: 286 QDWNNRSVFVVGDADQSIYSFRAADFRILMGFQEDFGKKSLDNKYDSTLVK--------- 336

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                    +       S      ++    N + ++  +   +     + L   D+E  E
Sbjct: 337 ---------LEENYRSTSTILEAANSLISNNKERIDKVLRATRGEGEPIRLTRCDDEIAE 387

Query: 371 AISIAIALR----MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
           A ++   LR     + + N    A++      +R ++  L R+ I   +  G+       
Sbjct: 388 AEAVIHRLRILDASNPELNWGDMAILYRTNAQSRAIEDSLVRWSIPYIVVGGLRFYDRRE 447

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              L + L  +   +D +++  ++  P                                 
Sbjct: 448 IKDLLAYLRLLINPSDSVSLLRVLNVP-------------------------------KR 476

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            +    + R++   +   +P W+     E            L   + L+    +   +  
Sbjct: 477 GIGKTTVQRLSDAASQLKIPLWEVVNDPEAVRSLAGRSAKGLLIFSELINELQSHLLSSS 536

Query: 547 NLSISDW-TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
              +     + +    + +              +E    +  + +  E            
Sbjct: 537 PAELVQLVLEKSGYLSELIATGTDEAEERRRNLQELVNAALQYQEESEDA--------NL 588

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
              ++          K   S+ + ++    S+ L F  + L G+ +G++P   +      
Sbjct: 589 EGFLSTAALSSDADNKDTASNRVTLMTLHSSKGLEFPVVCLVGMEQGLFPSYRS------ 642

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN------NIPTIASRWLQRL 719
                   L        +    +      +  ++     E         P IAS +L  +
Sbjct: 643 --------LDDPSSLEEERRLCYVGLTRAKEKLFLFHASERRMWGGMREPAIASIFLSEI 694

Query: 720 LVLG 723
               
Sbjct: 695 PEEL 698


>gi|269838114|ref|YP_003320342.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745]
 gi|269787377|gb|ACZ39520.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745]
          Length = 1125

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 92/868 (10%), Positives = 207/868 (23%), Gaps = 82/868 (9%)

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-EAEHLMKGTKG 228
             AL+ E       LA DF++  ++              +  +  L    E     +    
Sbjct: 297  RALRAEAIAGLLPLAEDFVRGYTEQRRRTGRAEFEDLLIWARDLLRDRPEVRRYFRERFR 356

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAI--------------VLPGLDCHIPTAIWNTI 274
             I++     + P    ++  +       +              +    D       +   
Sbjct: 357  CILVDEFQDTDPLQVEILLYLCGEEPDGVAARDWRELRPAPGRLFLVGDPKQSIYRFRRA 416

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
               S                          +         ++     G           P
Sbjct: 417  D-ISIYEWVKRHVLPGDLCTITQNFRSLGGVIDWVNGCFQHIIAPHDGVQAGYVPLDPWP 475

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-------- 386
                      +      +     DV        R EA ++A  LR ++D           
Sbjct: 476  QARLDLPRAPVVVVHHEMDGSADDVR-------RYEATTLAALLRQAVDVEGWPVRDPET 528

Query: 387  --------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                    +  A++   R      +  L   GI      G           L + L AI 
Sbjct: 529  GEIRPARWRDVAILIPSRTGIEIYEEALAEAGIPYRHEGGRSFFQRQEVRELINCLRAID 588

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
               D +++   ++         E +L+      +    R     +  +      L  + T
Sbjct: 589  DPGDRLSMVAALRSGAFGCSDEEIFLAAEAMGTDFDYRREPPPEHAAVADGMHTLRELHT 648

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
             ++   +P    R+ +E      L+   +             K         +       
Sbjct: 649  LRHRLPLPELVRRVIDET----RLIEYALTLPQGDQAAANLLKVVDQARAFAAARGGGLR 704

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              ++ +     R       +        +    I     ++   +   ++  R      V
Sbjct: 705  AFVRWLDTATSRSTEEEDADVAEAGDDVVRLLTIHAAKGLEFPIVALANLQGRDARTRNV 764

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
             P          +G+ +               E                 ++  +L    
Sbjct: 765  IPDHAVRRLHLRVGSQDQGYFETPGYAAAAEIEKQHDAAEQDRLLYVAATRARDHLILPV 824

Query: 679  KYIGQAAHDFE-----MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
                 +          +A    HL         N   I    +  LL        + L++
Sbjct: 825  IIWKGSREKERKPKGMLARLAPHLPVPTPDHSPNGADIDGCHV--LLAAHLPVGDNGLRE 882

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                       +    ++   +R        A  +  + S ++    +P    A      
Sbjct: 883  SPPATNVDVDDVLAVRERWLMERAALLKQAGAGLQVTTASSVEAWDQEPADD-AEATPGA 941

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                           GT  H  +  L            +  ++ +  +   +  +P H D
Sbjct: 942  LPRDA------ALAVGTALHATMEAL--------DLSDDGEVESMARAKAAEAGVPGHAD 987

Query: 854  IIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
                     ++ + L     +   + E+        + +    +   G  D +     G 
Sbjct: 988  E-----VAALARACLASGVVQRARAAERAAREAAFTLPVGDGFVE--GRVDLLFREPDG- 1039

Query: 913  VDITDYKTGDNPKKETAQKLIDPQLSLE--AAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
            + I DYKT      E         L++    AA+ A + +++    V  + ++  +   +
Sbjct: 1040 LVIADYKTDRV-TPEQVDAR----LAVYRNQAAVYAFAVAEVTGLPVKEVVFVFARAGVE 1094

Query: 971  IDCITNDKKKYSADELSEKSLKNLIEIV 998
               I  D    +       +   L +  
Sbjct: 1095 -RAIPVDDGLLALGRHLATASATLTDAA 1121


>gi|56750599|ref|YP_171300.1| hypothetical protein syc0590_d [Synechococcus elongatus PCC 6301]
 gi|56685558|dbj|BAD78780.1| unknown protein [Synechococcus elongatus PCC 6301]
          Length = 263

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 58/184 (31%), Gaps = 21/184 (11%)

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
              S + ++       A Y R   +L            T  GT  H  + +  +      
Sbjct: 3   YRLSATRLQTYHRCAQAYYWRYEQRLPGP----AGFGNTALGTSLHRCLAQFHRDWSGLE 58

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI-EKIFVN-- 884
                  +           N              +I  ++ +     +++    + V   
Sbjct: 59  PQPPIAWLADCWQQAATALNAEQQHQGW------QILETYYQQHILTKATWTRPLAVEGR 112

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETAQKLIDPQLSLEA 941
           I A + +E I   +TG  DR+DL + G + + DYK+      P         D QL L  
Sbjct: 113 IQATLVLEEIEFLVTGRYDRLDLEEDG-LHLVDYKSSQRFDPPSSSQI----DVQLGLYQ 167

Query: 942 AALK 945
            AL+
Sbjct: 168 LALE 171


>gi|118469031|ref|YP_888197.1| RecB family protein exonuclease [Mycobacterium smegmatis str. MC2
           155]
 gi|118170318|gb|ABK71214.1| RecB family protein exonuclease [Mycobacterium smegmatis str. MC2
           155]
          Length = 291

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 71/236 (30%), Gaps = 16/236 (6%)

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
           +    S S        P     R I +L              RGTL H  + +L      
Sbjct: 13  RRPALSPSRASDFKQCPLLYRFRAIDRLPEPRS-----TAQLRGTLVHAALEDLYGLPAQ 67

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFV 883
           +  P+    + +         +         R +  + + + L   +  +  +  +    
Sbjct: 68  ERVPDTALSLVEPAWDRVVAADPELASLA-ERDVLLREARALLTGYYRLEDPTRFDPQCC 126

Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE-TAQKLIDP-QLSLEA 941
               ++ +    + L G+ DRID+  +G V + DYKTG  P       +     Q+   A
Sbjct: 127 EQLIEVELADGTL-LRGYVDRIDVAPTGEVRVVDYKTGKAPAAARELAEFKALFQMKFYA 185

Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
            AL             + L  + L  K  +D      +    +       K +   
Sbjct: 186 VALLRS-----REVMPSRLRLLYLADKQVLDYSPAHDELLRFERTLIAIWKAIQAA 236


>gi|53724405|ref|YP_104505.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 23344]
 gi|121598749|ref|YP_994582.1| ATP-dependent DNA helicase Rep [Burkholderia mallei SAVP1]
 gi|124385848|ref|YP_001027516.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10229]
 gi|126450982|ref|YP_001082587.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10247]
 gi|238561590|ref|ZP_00441881.2| ATP-dependent DNA helicase Rep [Burkholderia mallei GB8 horse 4]
 gi|254174927|ref|ZP_04881588.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 10399]
 gi|254201583|ref|ZP_04907947.1| ATP-dependent DNA helicase Rep [Burkholderia mallei FMH]
 gi|254206917|ref|ZP_04913268.1| ATP-dependent DNA helicase Rep [Burkholderia mallei JHU]
 gi|254357473|ref|ZP_04973747.1| ATP-dependent DNA helicase Rep [Burkholderia mallei 2002721280]
 gi|52427828|gb|AAU48421.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 23344]
 gi|121227559|gb|ABM50077.1| ATP-dependent DNA helicase Rep [Burkholderia mallei SAVP1]
 gi|124293868|gb|ABN03137.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10229]
 gi|126243852|gb|ABO06945.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10247]
 gi|147747477|gb|EDK54553.1| ATP-dependent DNA helicase Rep [Burkholderia mallei FMH]
 gi|147752459|gb|EDK59525.1| ATP-dependent DNA helicase Rep [Burkholderia mallei JHU]
 gi|148026537|gb|EDK84622.1| ATP-dependent DNA helicase Rep [Burkholderia mallei 2002721280]
 gi|160695972|gb|EDP85942.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 10399]
 gi|238524389|gb|EEP87822.1| ATP-dependent DNA helicase Rep [Burkholderia mallei GB8 horse 4]
          Length = 700

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 85/708 (12%), Positives = 178/708 (25%), Gaps = 101/708 (14%)

Query: 34  FRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP------------IIKSL 81
                  P  +A+VT    T +A  E+R    ++   K+   P             + + 
Sbjct: 42  IEAKGFEPRHIAAVT---FTNKAAAEMRERVGKLLEGKTLTTPGKEGRKVPVNQLTVCTF 98

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             +  +    +                          +     D    +  E   +    
Sbjct: 99  HSLGVQILRQEAEHVGLKP-----------------QFSIMDSDDCFGMIQEQIGTTDK- 140

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 L + +  II + +      E+  A+           A        + +   L  
Sbjct: 141 -----GLIRKIQTIISLWKNGLVAPEE--AMTIAANEDEHQAAL-----VYRNYVATLHA 188

Query: 202 LNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             A              A +       +     ++I     +      L+  +A     A
Sbjct: 189 YQAVDFDDLIRLPTELFARNEPVRDRWQNRLRYLLIDEYQDTNACQYELLKLLAG--PRA 246

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                 D       W   T ++      +              +  L+       R+   
Sbjct: 247 AFTAVGDDDQAIYGWRGATLENLAQLGKDFP---------KLHVIKLEQNYRSTVRILTA 297

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +N +   +  + +  L  +                       + +   ++E  EA S+  
Sbjct: 298 ANNVIANNPKLFEKKLWSEH-----------------GMGDSITVTPCNDEEHEAESVVF 340

Query: 377 ALRMS---LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            L           +  A++      AR  +  L R  I   +S G           L + 
Sbjct: 341 RLSAHKFERRTQFRDYAILYRGNFQARVFEQVLRRERIPYVLSGGQSFFDKAEIKDLCAY 400

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L  I   +D  A    V  P    G        A      V+L        I       L
Sbjct: 401 LRLIANADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGI----EARL 456

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                +         Q      DKE A +++D +++ I          +         + 
Sbjct: 457 SARQVEPLRIFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNV 516

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +      +     E             +      ++       +       + +I  + 
Sbjct: 517 LEFLEWLKRKGTKPE------------AEQAVDGEAEGFHNADGLADTGKNLLGLIQTVA 564

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               ++ K E    + +     S+ L +  + L G+ EG+ P +   +       + +  
Sbjct: 565 LMSMLEGKEEDPDAVRLSTVHASKGLEYPHVFLVGVEEGIMPHSGGSDDGPIDDERIEEE 624

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYT--RSLRENNIPTIASRWLQRL 719
               E+ +   A     A  + HL +   R      I    SR++  +
Sbjct: 625 RIEEERRLMYVA--ITRAQRSLHLNWCKKRKRARETIVCEQSRFIAEM 670


>gi|328542978|ref|YP_004303087.1| DNA helicase II protein [polymorphum gilvum SL003B-26A1]
 gi|326412724|gb|ADZ69787.1| DNA helicase II protein [Polymorphum gilvum SL003B-26A1]
          Length = 812

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 80/774 (10%), Positives = 195/774 (25%), Gaps = 114/774 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+R     + G     +  + +   +                  V 
Sbjct: 94  SQILAVTFTNKAAREMRERIGHLIGGNVDGMAWLGTFHSIC-----------------VK 136

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    L  +  +       +  W A+  A ++D  +    
Sbjct: 137 ILRRHAELVGLSSGFSILDTDDQLRLMKQ--VIQAEGLDDKRWTARAFASLVDGWKNRAL 194

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
             +D+   +   +G                + +RL  LNA+      + ++     H   
Sbjct: 195 TPKDVPEGEARAFGNGKGRKL------YAEYQDRLSVLNAADFGDLLLHVITLFKTHPDV 248

Query: 225 G-----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     +++     +  A    +  +A        +   D       W      + 
Sbjct: 249 LADYQRRFRFMLVDEYQDTNIAQYLWLRLLAQGNPNICCV--GDDDQSIYGWRGAEVDNI 306

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +   +T         +  L+        +   ++ +   +               
Sbjct: 307 LRFEHDFAGAT---------VIRLERNYRSTSHILAAASHLIAHNE-------------- 343

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALITADRN 397
                      +       V +  A +  EEA SI   +    +   +  + A++     
Sbjct: 344 -GRLGKTLFTDDADPEAEPVCVASAWDSEEEARSIGDEIEALQARGHSLDQIAILVRASF 402

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             R  +      G+N  +  G      +      +    I +  D +A   +V  P    
Sbjct: 403 QMREFEDRFVTLGLNYRVIGGPRFYERMEIRDAMAYFRCIAQPADDLAFERIVNTP---- 458

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                      + +    ++  +A  +    +         E+ 
Sbjct: 459 ------------------------KRGLGEATLKIVHELARAERIPLMQAAAQLCLTEEI 494

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +          + +  L+       +  G +  ++  ++ +         +      +W 
Sbjct: 495 KPKAR------KALADLLAAFERWRAQLGAMKHTELAEIVL---------DESGYTEMWR 539

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            +           + E    ++      +      I     +   E    + I+    ++
Sbjct: 540 ADRSAEAPGRLDNLKELVRSMEEFES--LAGFLEHIALVMDRDNAEAGEAVSIMTLHSAK 597

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L FDT+ L G  EG++P   A +         +      E+    A      A     +
Sbjct: 598 GLEFDTVFLPGWEEGLFPHQRALD---------ESGRAGLEEERRLAYVGITRARKRAKI 648

Query: 698 IYTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
            +  + R +     +I SR+L  L          + +  G     +              
Sbjct: 649 WFASNRRIHGLWQSSIPSRFLDELPEAHVEVVEPSTRYGGYGGGGYGASRFDARDPFQSG 708

Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                    AQ    +     +      A       +       + +      G
Sbjct: 709 SYSTPGWQRAQRARAAQGGFAEAGGFARADMRSARARQQGPLTIEGELVARSVG 762


>gi|26992028|ref|NP_747453.1| DNA-dependent helicase II [Pseudomonas putida KT2440]
 gi|24987163|gb|AAN70917.1|AE016735_10 DNA helicase II [Pseudomonas putida KT2440]
          Length = 728

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 59/696 (8%), Positives = 168/696 (24%), Gaps = 123/696 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+R    ++ G     +  + +   +      A                  
Sbjct: 63  VTFTNKAAAEMRQRIEQLLGINPAGM-WVGTFHGLAHRLLRAHWQE-------------- 107

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
              ARL+  ++    D  + L     +   +      W A+     I+  + E  + + +
Sbjct: 108 ---ARLVQNFQILDSDDQQRLIKR--VMRELGLDEQKWPARQAQWFINGQKDEGLRPQHI 162

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG---- 225
            A  +        L    ++     + +              +  +    +H        
Sbjct: 163 QAGGD--------LFLATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPGLLEHYQ 214

Query: 226 -TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                +++     +       +  +A    G  ++   D       W     ++ +  ++
Sbjct: 215 RRFRHVLVDEFQDTNAVQYAWLRLLAR--GGDSLMAVGDDDQSIYGWRGAKIENIHQYTA 272

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
           +   +                              +              +     N+  
Sbjct: 273 DFPDAEMI--------------------------RLEQNYRSTGGILKAANALIANNSGR 306

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRV 402
           L  ++         + L  A NE +EA  +   +   + +   + + A++      +R +
Sbjct: 307 LGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSRVL 366

Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
           +  L R  I   I  G             + L  I    +  A+  ++  P         
Sbjct: 367 EEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVP--------- 417

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                                     + +    +   + +          +      A  
Sbjct: 418 -------------------------PRGIGEKTVEAIREHARHSQLSMWEAMCQLIAAKA 452

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
           L       +   +       +   ++ +             +              E+G+
Sbjct: 453 LKGRAASALGAFIELIEGLAAKVVDMPL------HTMTQTTIEQSGLITYHQEEKGEKGQ 506

Query: 583 TLSSLFSKIIETGS-----CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                  +++            A+       +             E   ++ ++    ++
Sbjct: 507 ARVENLEELVSAARNFESTDEDADLSPLSAFLGHASLEAGDTQADEHEDSIQLMTLHSAK 566

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RH 696
            L F  + L G+ EG++P                ++L+   +   +    +       R 
Sbjct: 567 GLEFPYVFLVGMEEGLFP--------------HKMSLEEPGRLEEERRLAYVGITRAMRQ 612

Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
           L+ T +       +     + R +          ++
Sbjct: 613 LVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVR 648


>gi|320334525|ref|YP_004171236.1| UvrD/REP helicase [Deinococcus maricopensis DSM 21211]
 gi|319755814|gb|ADV67571.1| UvrD/REP helicase [Deinococcus maricopensis DSM 21211]
          Length = 768

 Score = 81.9 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 75/689 (10%), Positives = 166/689 (24%), Gaps = 117/689 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R     +    + +   + +          A             
Sbjct: 81  GEILAVTFTNKAAAEMRERASHLVQGANQL--WMSTFHSAGVRILRAYGE--------YI 130

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R   +        + L D+I ++    P + P            L  I+D  ++   
Sbjct: 131 GLKRGFVIYDDDDQL-DILKDLIGNVPGLGPDTNPRV----------LRSILDKAKSNLW 179

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE---H 221
              DL              AA         +  R    NA          +R   E    
Sbjct: 180 TPGDLLRHPEPFISGIRKDAA---SEVYTRYEARKRAQNAIDFGDLITETVRLFKEVPGV 236

Query: 222 LMKGTKGPII--IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
           L +     +   +     +  A   L   +A+     +V+   D       +     ++ 
Sbjct: 237 LERVQDRALFIHVDEYQDTNKAQYELTRLLASRDRNLLVV--GDPDQSIYRFRGADIQNI 294

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      +P   + +L                                   +    
Sbjct: 295 LDFQK-----DYPDAKVYRLEHNYRSSAR---------------------VLNLANKLIE 328

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397
            NT+ LE  +  ++     V    A++ R E   +A  + +           A++     
Sbjct: 329 NNTERLEKVLRPVKDSGEPVLFHRANDHRGEGDFVAEQITLHHHRGIKFSDMAILYRTNA 388

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L R  I   I  G+          + S         D +A+           
Sbjct: 389 QSRVIEESLRRVNIPAKIVGGVGFYDRREIRDILSYARLSINPADDVALR---------- 438

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                           + +   I     N               
Sbjct: 439 --------------------RIIGRPRRGIGDTALAKLIEWANINKVPILVACHN----- 473

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             A  +++                +      S   + +  +     + + +         
Sbjct: 474 --AEQILERGANKAVEFANLMDAFSEAVEAYSPGAFLRYLIETSGYLDMLKAENNNEGQA 531

Query: 578 E-EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET-VKPKIEKSSTLFILGTLE 635
             E  + L +   +  +      A+ ++   +++ + D  T  + K      + ++    
Sbjct: 532 RIENLEELVNAAEEWAQDHEGTIADFLDDAALLSSVDDMRTKTENKDAPEDAVTLMTLHN 591

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT- 694
           ++ L F  + + G  EG+ P   A              L        +    +       
Sbjct: 592 AKGLEFPVVFIVGTEEGLLPSKNA--------------LIEPGGVEEERRLFYVGITRAM 637

Query: 695 RHLIYTRSLRE----NNIPTIASRWLQRL 719
             L  T +           T  SR+L+ L
Sbjct: 638 DRLYLTAAQNRMQYGKTNSTEDSRFLEEL 666


>gi|134291624|ref|YP_001115393.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Burkholderia
           vietnamiensis G4]
 gi|134134813|gb|ABO59138.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Burkholderia
           vietnamiensis G4]
          Length = 1209

 Score = 81.9 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 95/906 (10%), Positives = 196/906 (21%), Gaps = 82/906 (9%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG-----KKSTILPIIKS 80
           L   LVE  ++ PL P  L S TI V +    Q L+                 I   +  
Sbjct: 20  LRDLLVEWIKHYPLAP--LESETILVQSNGIAQWLKLALAADRDPATGEGGCGIAAALDV 77

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
                        +L       VS   +   + RL+ +          +      +S   
Sbjct: 78  SLPSRFVWQAYRAVLGAESVAEVSPFDKSRLVWRLMRMLPALAARPAFEPLRRF-ISDDD 136

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLH---ALKNEKYGMWWLLAADFLKIASKYWTE 197
                  LA+ LAD+ D  +     W                      D  +  +  W E
Sbjct: 137 DRRKRFQLAERLADLFDQYQMYRADWLARWADGDAVVLDARGGEQPLPDEQRWQAALWHE 196

Query: 198 RLVELNASS----------PVGYQIALMRAEAEHLMKGT----KGPIIIAGSTGSIPATA 243
            + ++  S                 A MR  A              I+I G +       
Sbjct: 197 LVADVAGSDASREISSRGGRAAVHEAFMRRIAAWDDDRGPVGIPRRIVIFGISSLPHQLL 256

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------THPQYSL 296
             ++ +A      + +     H    I                                 
Sbjct: 257 EALAALARWSQVMMCVANPCAHYWADIVPDRDLLGRRQPRQQRRTGMPAELDLDTLHLHA 316

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI---- 352
             LL     +  D   L +  +    R     K        D+  +      +  +    
Sbjct: 317 HPLLASWGKQGRDFIGLLDAFDNADAREHYGPKFARIGQRIDLFESRGASTLLQQLQDDI 376

Query: 353 -----------------QKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSAL 391
                                  +    A + + E   +   L  + +       +   +
Sbjct: 377 RDLRPLRETQETWPDVDPATDGSIRFHVAHSAQREVEILHDQLLAAFNADPSLRPQDVVV 436

Query: 392 ITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
           +  D          +           I   ++             L  LL          
Sbjct: 437 VVPDIEAYAPHVQAVFGLVDRSDPRYIPFSVADREQRKADPLIGALEMLLGLPNARLAVS 496

Query: 445 AIATLVKHPLAKFGF-----PEKYLSRAKNALELVA-----LRGNKNSYDIMDLKSLVLD 494
            +  L+  P  +  F         L        +        R +          +    
Sbjct: 497 DLLDLLDVPALRKRFGIDETDLPKLRAWIRGANIRWGLHAQQRASLGLPLDEHAAAPHTW 556

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               ++            +  D E    +       + PLV      +    +L+     
Sbjct: 557 AFGLRRMLLGYAVGSEAGAWHDIEPFDEVGGLDAALLGPLVRLIDALDHAWRSLAEPATA 616

Query: 555 KLTVTCLQNVCL---DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                 L+N+       H              L +      E             D    
Sbjct: 617 PDWCERLRNLKQTFFSAHDSEDAYTLARLDNVLQAWLDACTEARLTDVLPLSVVSDHWLS 676

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            +D   +  +   +  +     +  R + F  + L G+N+G +P+      F    +   
Sbjct: 677 QLDEGGLSQRF-FAGAVTFATLMPMRAIPFRRVCLLGMNDGDYPRARVPMDFDLMRLHYR 735

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFD 729
              ++  +          + +   HL  +   R   +N     S  + +L        + 
Sbjct: 736 PGDRSRREDDRYL-LLEALLSARDHLHVSWVGRSITDNGVRPPSVLIGQLRDHL-AAGWR 793

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                G       + L        +      P        ++++   +         A  
Sbjct: 794 LAGASGAGPDALVKALTVEHPLQPFSVAYFPPDTNDAAAVFTYAAEWRDEPRACRDPAPP 853

Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
                            +        +     +R+          +        +  +  
Sbjct: 854 AATHVPAIVRDDPLSLRELAEFLAKPVKTFFSQRLRVALDVDETAVDDEEPFELDSLDAW 913

Query: 850 PHIDII 855
              D +
Sbjct: 914 KLQDEL 919


>gi|291333834|gb|ADD93517.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C13]
          Length = 534

 Score = 81.9 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 61/564 (10%), Positives = 145/564 (25%), Gaps = 71/564 (12%)

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
               + SL  A+    D +A  ++++ P    G  +  +  +   +         +    
Sbjct: 2   PVMDMLSLTRALLSPADRIAWLSVLRAPFCGLGLDDLVIISSTLEVSGKTPLALLHQLQA 61

Query: 486 MDLKSLV-LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
           +D      L   A  +    +P          K     +++H+   +    T + +    
Sbjct: 62  VDYTENNNLSPYARHRLKHIIPCIHYAWQMRGKGCLRNVIEHLWIQLGGPSTLR-DSAEL 120

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                  D  +                                        +    +   
Sbjct: 121 DDVRCFLDLLEHW------------------------------------QVAGTLPDWES 144

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF- 663
           +     +L            + ++ I+   +++ L FD ++L GL+      +     + 
Sbjct: 145 FQQAADKLFATPNRGDMDATTPSIQIMTIHKAKGLEFDHVLLPGLSRSPKSPDKPLLRWQ 204

Query: 664 -------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                   S ++ + L     E       +    A     L  TR L       ++  +L
Sbjct: 205 QTITQQGESSLIMAPLGAHDEED-DSIYGYLKHEAAIKTQLENTRVLYVAATRAVSKLYL 263

Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
              +   G+D+    K      L  T             + +       +          
Sbjct: 264 FAQVTEKGSDWQAPAKTSLLSSLWQTIVTGLDDNSLSVIQVEANSAPSERRSGLHHKRRL 323

Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDR---------TDRGTLFHNIITELIKKRINKN 827
            +   P       +L        ++                GT+ H  I ++  +  +  
Sbjct: 324 PITFCPPQAPTLTLLTGVEGNRKREQHSHQLSDDNARLAHLGTIMHRTIKQIATEGPSSW 383

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNI 885
             +  + M     +  ++  +   +         +   + L  ++ +       +     
Sbjct: 384 PEQRLNKMPVSWRAQLKELGV--LVSEQELASMRQALINMLNDDDGLWILQPHTQAHSEQ 441

Query: 886 PAKMAIE-----SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
               +         G+ +    DR  +   G   I DYK       ++       Q +  
Sbjct: 442 ALGYSAAVAGCRDGGVSV---IDRTFVT-DGVRWIIDYKFSAPNADQSVAVFSTRQTTTY 497

Query: 941 AAALKAGS--FSQIDCRKVANLFY 962
            A L+  +  + QID   V    Y
Sbjct: 498 QAQLQHYANLYRQIDTTPVRGALY 521


>gi|220933808|ref|YP_002512707.1| ATP-dependent DNA helicase Rep [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995118|gb|ACL71720.1| ATP-dependent DNA helicase Rep [Thioalkalivibrio sp. HL-EbGR7]
          Length = 671

 Score = 81.9 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/571 (10%), Positives = 139/571 (24%), Gaps = 90/571 (15%)

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATA 243
                 +   L   NA       +  +R   E+       +     +++     +     
Sbjct: 169 ARLYAAYVRALKAYNAVDFDDLIVQPVRLLEENAEVRERWQNRTRHLLVDEYQDTNTCQY 228

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL-LDF 302
           RL+  +     G  +    D       W     ++              Q    +L +  
Sbjct: 229 RLVRLLVGVDGG--LTAVGDDDQSIYAWRGARPENLAAL----------QQDFPRLKVIK 276

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
           L+       R+   +N++ G +  + +  L     +                    + ++
Sbjct: 277 LEQNYRSTNRILQTANQLIGNNPHVFEKRLWSALGEGEP-----------------IRIL 319

Query: 363 EADNEREEAISIAIALRMS---LDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
             ++  +EA  +   +           +  A++    + +R  +  L    I   +S G 
Sbjct: 320 PCNDGEQEAARVVAEIMKHKFKHRTEYRDYAILYRGNHQSRVFEKLLREHAIPYKVSGGQ 379

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
                     + + L  +   +D  A   +V  P                       R  
Sbjct: 380 SFFERSEVKDVMAYLRLLANPDDDTAFLRIVNVP-----------------------RRE 416

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                +  L     +R  +            RL     +      D +L+          
Sbjct: 417 IGPSTLEKLGEYATERSVSLLTACFEMGLTERLPARAVQRLQGFADWLLE----FGRKAE 472

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
             +      ++          L      +          E    ++ L  +  E G  I 
Sbjct: 473 EGDPAKVARALIGELNYDDWLLDQARDPKAATRRMDNVNEVLDWMARLSKEGAEGGKDIG 532

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                       L+D        + S  + ++    ++ L F  + L G+ E + P   +
Sbjct: 533 EIVRH-----MTLMDILDRAGGEDDSDGVHLMTLHAAKGLEFPHVFLVGMEEELLPHRVS 587

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE----NNIPTIASR 714
                             +    +    +      +  L  T + +       +    SR
Sbjct: 588 ---------------LEEDGLEEERRLAYVGITRAKLSLTLTYARKRTRFGEEVDCEPSR 632

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
           +++ L                +  +     L
Sbjct: 633 FIEELPREHLDWPDAKPPDPEEARITGKAHL 663


>gi|299067242|emb|CBJ38439.1| putative helicase, uvrD subfamily [Ralstonia solanacearum CMR15]
          Length = 1177

 Score = 81.9 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 90/807 (11%), Positives = 186/807 (23%), Gaps = 79/807 (9%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGS 238
              D L    + +  +   ++ +        LMR     A  +  +      +++     +
Sbjct: 364  LGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQVRLDARYKHLLLDEFQDT 423

Query: 239  IPATARLMSTVANHPNGA----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             P   R++        G      V    D       +     +  +        +     
Sbjct: 424  NPMQWRILQGWLRGYEGTGTRPTVFLVGDPKQSIYRFRRADARLFDAARDMLVAA--FDA 481

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            ++ +           ++ +  V      R      +             +L   +P  + 
Sbjct: 482  TVLRTNRTRRNAPAVLEWVNAVFLLARARGDYPIYAEQSTGVDAPVGRALLLPLVPVPEA 541

Query: 355  CFSDVAL-----------IEADNEREEAISIAIALRMSLDENK------------KKSAL 391
              +D                     +E   +A  LR      +                L
Sbjct: 542  AQADETAPRDSLTEPREEAGDSQRYDEGRQVAACLRALHAGERVRENGAERSVRWSDFQL 601

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +   +      +  L   G+         L  TL +  L +LL+ +      + +A +++
Sbjct: 602  LVRRKRYLADYERALRDAGVPYLSPRRGGLLATLEALDLCALLDFLMTPQADLPLAHVLR 661

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             P+      +             A  G         L +L     A  +           
Sbjct: 662  SPIFAVTDDDLIALA-------QAGEGASAPTWWERLTALADRPHAAAQWRRAHRLLSRW 714

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            L+         L+DHI+        Y           ++++        L         +
Sbjct: 715  LAVAPTLPVHDLLDHIVYTGELKRRYAERVPEANREQALANLDAFLKLALDLDG----GR 770

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
             P+L              +       ++A+A E  D I   +  E           + IL
Sbjct: 771  YPSLPKFMAELRAIRQGDEEESPDEGVQADAAEAPDAIDAELASE-------GLDAVQIL 823

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAK---NPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
                S+ L    ++L   +      +TA    +        +  +        G+A    
Sbjct: 824  TVHASKGLEAPFVVLLDSHHSDTRADTAGILIDWPPGAEAPAHFSAFGKAAERGRARDPL 883

Query: 689  ----EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                       +              +    +            D               
Sbjct: 884  FAQEAALAERENWNLLYVAMTRARQALIVSGVANKRDGAAAQAVDEGDAPDVDGSASWYT 943

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV------YARRILKLDFIPH 798
            L  T         +            S +        P  V       A R+        
Sbjct: 944  LLATAGAATPAPVEAAAGTGGADHAASQAVAYHDFRVPLTVTVRIGGAAERVADAPDTAD 1003

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
               D     +G L H ++  L +    +  P+        I   F    +          
Sbjct: 1004 AIFDQGAVAQGELLHAVLERLTRHGKPEQVPDAAA-----IARWFGATGITDADAARAAE 1058

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
               ++  +         +  +     +         G  L    DR+       V + DY
Sbjct: 1059 AVRRMLAAEALAHVFDPARFDVAHNEVEL---FSPEGALL--RIDRLIERGD-EVLVVDY 1112

Query: 919  KTGDNPKKETAQKLIDPQLSLEAAALK 945
            K    P     +     QL   AAA+ 
Sbjct: 1113 KLRLLPV---ERAAYADQLRGYAAAVA 1136


>gi|239940108|ref|ZP_04692045.1| hypothetical protein SrosN15_03853 [Streptomyces roseosporus NRRL
            15998]
          Length = 277

 Score = 81.9 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 71/235 (30%), Gaps = 27/235 (11%)

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP--------- 849
             +K  +   RGTL H ++  L        T      +         +             
Sbjct: 12   PEKPSEAATRGTLVHAVLERLFDVPAADRTAPRARALIPGQWDRLLESKPELSDLFAGDS 71

Query: 850  -PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908
                   W     ++   +   E+  +  +E     +  +  +ES G+ L G  DR+D+ 
Sbjct: 72   EGERLTRWLGEAERLVDRWFSLEDPTR--LEPAEREMFVETELES-GLRLRGVIDRVDIA 128

Query: 909  KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
             SG V I DYKTG  P+          Q++  A  +       +       L  + L   
Sbjct: 129  PSGEVRIVDYKTGKAPRP-EYSDGPLFQMTFYALVIWR-----LKGVVPRRLQLVYLGSG 182

Query: 969  FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
              +                E+  + L+ +   ++   +      R ++      +
Sbjct: 183  DVMTYDPVVAD-------LERVERKLLALWDAIRLATETGDWRPRPTK-LCGWCD 229


>gi|325916135|ref|ZP_08178422.1| ATP-dependent DNA helicase Rep [Xanthomonas vesicatoria ATCC 35937]
 gi|325537679|gb|EGD09388.1| ATP-dependent DNA helicase Rep [Xanthomonas vesicatoria ATCC 35937]
          Length = 658

 Score = 81.9 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 62/712 (8%), Positives = 165/712 (23%), Gaps = 126/712 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T ++ +E+R    +           I +   +  +    +   +         
Sbjct: 50  RIAAITFTNKSAKEMRERVAKRIRGDGADGLTICTFHALGLKFLQIEHAAA--------G 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R   +                D   +    +  +  +AI  AKNL   I   +     
Sbjct: 102 LKRGFSIFD------------SDDAAAQIKDLMHGAKPDAIEDAKNL---ISRAKNAGLS 146

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E   A                     + +  RL   NA          ++    +    
Sbjct: 147 PEQAMAAARSNREKEAAS-------LYERYQARLTTFNAVDFDDLIRLPVQILEANEEIV 199

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +   G +++     +  A  RL+  +A        +   D       W     ++  
Sbjct: 200 MGWRERIGYLLVDECQDTNDAQYRLLKMLAGPRGNFTCV--GDDDQSIYAWRGANPENLQ 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL                            ++     +     
Sbjct: 258 QM-----GRDYPALEIIKL---------------------EQNYRCSNRVLRAANALIAH 291

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA---LITADRN 397
           N       + + Q     + + E  +   EA  +A  +       +   +   ++     
Sbjct: 292 NPHEHLKTLWSDQADGERIRVWECRDSEHEAEKVAAEISFLGTAKQVPWSDFCILFRGNF 351

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  +    +   ++ G           + S L  I    D  A    V+ P    
Sbjct: 352 QSRPLEKAMQLLRVPYHLTGGTAFLERQEVKDVLSWLRLIVNPEDDAAFLRAVQSP---- 407

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                          + +    +A               + E  
Sbjct: 408 ------------------------------KREVGATSLARLAELASAKSVPMSRAAESM 437

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L       ++       +      ++   +  ++       +    ++      F
Sbjct: 438 GALQHLPPRAANGLSAFTDILRDMREHSASMPAGELVRMLADKSGLLNDLRNQSKDETGF 497

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +   + L  L            A+       +   +   +   K +  + + ++    S+
Sbjct: 498 QRRKRNLDELAEWFEGGPRGASASD------LAAQLALLSRNDKDDGGNQVRMMTMHASK 551

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696
            L F  + + G           ++  L   +  +      E+        +      +  
Sbjct: 552 GLEFRYVFIVGC----------EDGVLPHEVSLEEGNLQEER-----RLLYVGITRAKEQ 596

Query: 697 LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           L  + S        ++    SR+   +          +     +   +    
Sbjct: 597 LWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASA 648


>gi|317482570|ref|ZP_07941585.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915992|gb|EFV37399.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 1343

 Score = 81.9 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 57/496 (11%), Positives = 126/496 (25%), Gaps = 28/496 (5%)

Query: 183 LAADFLKIASKYWTERLVELNAS---SPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTG 237
              D L    + + +   E N +           L+          +     +++     
Sbjct: 252 RKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGERTRRRYSHVLLDEYQD 311

Query: 238 SIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY-STHPQY 294
           +    A L++ +   +    + V    D       W   +  +  +   +    + +  +
Sbjct: 312 TSTTQAALLAALFHVDASQRSAVNAVGDPFQSIYAWRGASPGAFRMFQQDFHLSAGYKPF 371

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            L+       I  E    L         R        +   + D                
Sbjct: 372 PLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDAPEGTLGVLGFA 431

Query: 355 CFS---DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                 D  +           S A        E K   A++   ++     +  L + G+
Sbjct: 432 TAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKAPVAVLFRSKSHMPEYQAALEQAGL 491

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              +     L        L +LL+      D  ++  L+  P       +  +       
Sbjct: 492 TTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAADLTMLARFAEE 551

Query: 472 ELVALR------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
           +    R            D    +   + R    +    V      L  +  +L   L  
Sbjct: 552 QNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPDVLLRGDLVKLLERLSA 611

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN---------VCLDEHRKLPNLW 576
           H    IT         +   G   + D  +  +  L           +   +HR  P L 
Sbjct: 612 HGRNAITRAAVMLRQVHDAVG-RPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALA 670

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLE 635
                  +  +     E  +    +   +I  +  L   E     +  +   + ++   +
Sbjct: 671 HMPMDAIVDLVDMYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQ 730

Query: 636 SRLLNFDTLILGGLNE 651
           S+ L +D + + GL  
Sbjct: 731 SKGLEWDAVAVVGLTA 746



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 84/856 (9%), Positives = 221/856 (25%), Gaps = 94/856 (10%)

Query: 151  NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL-------- 202
             + D++ ++        D  +L        + ++A  L + +++  E+  E         
Sbjct: 506  EIRDLMALLHVA-ADHTDTGSLMRLLATPRFTMSAADLTMLARFAEEQNTEQRFQALVQA 564

Query: 203  ---NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-- 257
                  +P     A++R   + +      P ++           +L+  ++ H   AI  
Sbjct: 565  GLAQPDTPANEWAAVVREYRDQVANAVFLPDVL-----LRGDLVKLLERLSAHGRNAITR 619

Query: 258  -------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                   V   +   +   I   I     +I +       +PQ+     L  + +     
Sbjct: 620  AAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALAHMPMD---- 675

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD-NERE 369
              + ++ +             L    + + +   +E++  ++     DV L+    ++  
Sbjct: 676  -AIVDLVDMYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQSKGL 734

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSS 428
            E  ++A+    ++     +   +    +       E   +       +A   L+      
Sbjct: 735  EWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGGTEQGHWTAPEYHETADSWLTNPTAVP 794

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            +       I       A   +   P+A             +     ++R   +  + +D 
Sbjct: 795  VPMRADAGILPRFPHDA--DVEADPIA--SLAALDDVELIDDEVFGSMREFGDGVEEVDA 850

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                L +        H    +       +     L+ +                 +    
Sbjct: 851  SGWYLTQAEEYGRRLHADERRLMYVALTRAREDALMTYCAYTGESGRDPSVVPKGSRAAQ 910

Query: 549  SISDWTKLTVTCLQNV-------------CLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
              + W ++                       +  + +      E   T    F       
Sbjct: 911  PSNFWLEVHDALQAREHAISAQDCVERLQAANAGKPMLISAQGEAIATPEGFFIGEHAAA 970

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                     W   IT+      +      S  +    +    ++  D+  L    +    
Sbjct: 971  YGDAVVGEAWQTPITQTDAAVELPWPATLSDAVHEQLSRGIDVIAADSSSLEQHQDAGPL 1030

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
               A+       + +D     +     +A     +A G +++  +   R   +     R 
Sbjct: 1031 LQRAQLLVDDADLMADAASGQSLDEAVKAKAQRVLAAGRQNVT-SLQARVGGMNEREERL 1089

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRK-LDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
              R ++           + G  +  W  + ++           +    +    +   F  
Sbjct: 1090 YWRSIIRPIPRISSPAAEAGTQFHAWAEQFINAGKPDEAVLAYEAESSMPHTGQDAGFVS 1149

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
             + ++ D           L       + P                          +    
Sbjct: 1150 REAMLAD-----------LAERERQCRKPSTRQ-------------PAVPQPTAQQSASA 1185

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
            +     +    +N      + W+    +             +     +      + +  +
Sbjct: 1186 VSAASATSISSDNATESKLVAWQRRLAE----------SSWAKRIPAWTERAIVVDVPGV 1235

Query: 895  GIHLTGFADRIDLLK------SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
            G+ + G  D + +        +    + D+KTG  P K         QL +    L A  
Sbjct: 1236 GL-VNGKLDAVFIGGLDPSSTTARFTVVDWKTGRRPTKPDDITRKLAQLDMYRLLLAAVE 1294

Query: 949  FSQIDCRKVANLFYIR 964
              ++D    A L+Y+ 
Sbjct: 1295 GVELDSVD-ATLYYVS 1309


>gi|218659156|ref|ZP_03515086.1| hypothetical protein RetlI_05536 [Rhizobium etli IE4771]
          Length = 212

 Score = 81.9 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 85/210 (40%), Positives = 115/210 (54%), Gaps = 4/210 (1%)

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
             +  R   +  +        +       +    +   F+DV+LIEA NEREEA +IA+A
Sbjct: 3   PILTTRRNPVPGARPGRGDQRLGKHGRASSPGGALTSAFNDVSLIEAANEREEATAIAVA 62

Query: 378 LRMSLDENKKK----SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
           LR++L+   +     +ALIT DRNLARRV  EL+RFGI  D SAG PLS T   S+L  L
Sbjct: 63  LRLALERPGQDGESRAALITPDRNLARRVMAELSRFGILADDSAGTPLSATPQGSLLQLL 122

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L A  +  D +AI +L+KHPLA+FG     L  A  ALEL+ALRG     DI  L+ L+ 
Sbjct: 123 LEAALRPGDPVAIVSLLKHPLARFGLERDALISATEALELLALRGGVVEVDISALEPLLT 182

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
            ++A Q  + H P W+  L  E  + A  L
Sbjct: 183 HQLAEQALDRHAPQWRKALPAEAADAAFEL 212


>gi|27365148|ref|NP_760676.1| exonuclease V subunit gamma [Vibrio vulnificus CMCP6]
 gi|27361294|gb|AAO10203.1| exodeoxyribonuclease V, gamma subunit [Vibrio vulnificus CMCP6]
          Length = 1162

 Score = 81.9 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 88/743 (11%), Positives = 197/743 (26%), Gaps = 87/743 (11%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+ E  +  G  + I      L           +L         +   
Sbjct: 34  QILVQSPGMSQWLKMELAKEFGVAANIE---FPLPATFIWDMFTHVLADVPKRSAFNKEA 90

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK--- 164
              +L  L+         + +       L      A    L++ +ADI D          
Sbjct: 91  MTWKLMHLLPQ----QLALAEFSPLARYLQDDEEGAKLYQLSEKIADIFDGYLVYRPEWI 146

Query: 165 -KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-- 221
             WE   A+        W       +    +                    + +   +  
Sbjct: 147 RDWEAGKAVAEIGDEHPWQPML--WQALYDHTVALGQSP--YHRANLYEHFIDSLENYTG 202

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN--------- 272
             +     + + G T   P     + T+  H +  ++      +    + +         
Sbjct: 203 QFEHLPQRLFVFGITSLPPRYMDALKTLGQHIDVHLMFTNPCRYYWGEVRDRKFLARLAA 262

Query: 273 ----------------TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                             +E+       N     H +     LL  +     D   L + 
Sbjct: 263 KQRQHLVWQQDHSQLQGQSEQLKGSIEDNLADELHTEVVGNSLLASMGKLGRDNMYLLSQ 322

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKI----------PNIQKCFSDVALIEADN 366
                  + V  +             ++ E++           P I+     ++L    +
Sbjct: 323 LESHEIEAFVDIEPDSLLHQLQADILNLEEHQDDDHIESSHHKPLIEANDRSLSLHVCHS 382

Query: 367 EREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDISA 417
              E   +   L    D +     +   ++ AD N        +         I   IS 
Sbjct: 383 PMREVEVLHDQLLAMFDADPTLKPRDIIVMVADINAYSPAIQAVFGNAPGERFIPYSISD 442

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELVA 475
                 +   +   +L+N          +  L++ P  L KF   E    +AK  +E   
Sbjct: 443 RTADQESPILNAFLTLVNLPQMRCLASELLELLETPAILQKFSLSETEFLQAKQWVEASG 502

Query: 476 LRGNKNSYDIMDL---------------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
           +R   ++    +                + L+   +                  E + + 
Sbjct: 503 IRWGLDAQTGCEFDLPQTRQNTWQFGIQRMLLGYAMPESAGLFQSGEEWLAPYNEVQGMG 562

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
             L   +   I      +  +++     +I  W +     L +    +      L  +  
Sbjct: 563 AELAGKLSYFIE---KVRCYRHALAQAQNIDAWRQQLHGVLADFFAVDLEGEVAL--KSI 617

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
             TL  L  ++ +     + +       +   + G  V  +      +     +  R + 
Sbjct: 618 RDTLGQLKEQLSDAAFEAELSPSVIRQYLLNKLSGSRVSQRFLAG-QVNFCTLMPMRSIP 676

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
           F T+ L G+N+GV+P++ A   F     ++    ++             + +  + +  +
Sbjct: 677 FRTVCLLGMNDGVYPRSVAPEGFDLIHGRARAGDRSRRDDDRYL-FLEALLSAQQSVYIS 735

Query: 701 RSLRE--NNIPTIASRWLQRLLV 721
              R   +N   + S  +  L+ 
Sbjct: 736 YVGRSVQDNTEKVPSVLVAELME 758


>gi|317472659|ref|ZP_07931974.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316899836|gb|EFV21835.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 618

 Score = 81.9 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 80/691 (11%), Positives = 180/691 (26%), Gaps = 147/691 (21%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILP-IIKSLGDVVEEKFTADLLLSYNLNPPV 103
           +++ +   TK A  E++  F+++ G+    LP    +   V                  +
Sbjct: 49  SNILVITFTKAAAAEMKERFLKLAGRS---LPVSFGTFHAVFFTILKHAYSFRAGC---I 102

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII---E 160
               +  +L R I++ R+       D                      L  +I  I   +
Sbjct: 103 LPEHKKYDLLREIIMDRDLETGDEPDF---------------------LRSLISEISLVK 141

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI-------A 213
            +    +  H+                 ++  K + E+L +          +        
Sbjct: 142 GQLLSMDYYHSQSCADSV---------FQLIYKQYNEKLRKNQWMDFDDILVYTYSLLKE 192

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
                A    K     I+I       P    ++  +A   N   ++   D       +  
Sbjct: 193 REDLLAAWQNKFQY--ILIDEFQDISPIQYEIIKMLATPRNNLFIV--GDDDQSIYRFRG 248

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
              +       +   S   Q         LD+       +   S ++   +       + 
Sbjct: 249 AKPEIMLGFPKDYKDSEKIQ---------LDVNYRSSPEIVEASQKVIRVNKKRFDKEIR 299

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSAL 391
                              +     + L    N++EE   +A  LR   +     ++S++
Sbjct: 300 SC-----------------RDREVPIELRTFKNQQEECTYVAKRLRDEYEKGHPYEESSI 342

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           +      AR +  +L  + I   +  GIP L     +  +   +              ++
Sbjct: 343 LVRTNLGARTMLGKLMEYNIPFTVKDGIPSLFEHWIARDIIDYMRMALGDRRRSTFLRIM 402

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                  +    R   +  +I              K  T    W  
Sbjct: 403 NRP------------------KRYISREYIDQPEIS---------FEDLKEKTRDKEWLY 435

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
              +E +E   LL D     +TP +     + S   N  +S++ ++     + +      
Sbjct: 436 DYIDELEEDLRLLKD-----MTPFLAVTYIRKSVGYNAFLSEYARIRKLKEEELTDVLEE 490

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
                   +  +       +  E       +                   + +    + I
Sbjct: 491 LQETARGYDTYEEWFDFMRRYTEELKAQSES-------------------RNQGKQGVVI 531

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                ++ L ++ + L  +N+GV P   A                  E+   +    +  
Sbjct: 532 STLHSAKGLEYERVFLIDVNDGVIPYKKA---------------VKTEELEEERRMFYVG 576

Query: 691 ANGTRH-LIYTRSLRENNIPTIASRWLQRLL 720
               +  L      +  N  +  S ++  L 
Sbjct: 577 MTRAKKYLHVFSVEKMYNKDSKVSDFILPLE 607


>gi|309789677|ref|ZP_07684258.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
 gi|308228413|gb|EFO82060.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
          Length = 641

 Score = 81.9 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 82/734 (11%), Positives = 189/734 (25%), Gaps = 114/734 (15%)

Query: 2   HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
             ++  V          R    +     L     +        + +     T +A +E+R
Sbjct: 9   PEQRAAVLA-PVGPVLVRAGAGSGKTRVLTLRIAHLISIGAKPSQILALTFTNKAAREMR 67

Query: 62  SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
               +  G  +  L +  +   V        +           +I    E  +L     +
Sbjct: 68  ERLRKQLGAGARGL-VAGTFHAVCVRILREMIAGRVGTYTADFSIYAGDEQLQLAAAALD 126

Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
              +    L     +   IS A +  L   L      +        D             
Sbjct: 127 AATERPPMLLEPEEVLRRISRAKSRLLTPRL------MARFSPDPVD------------- 167

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-----TKGPIIIAGST 236
                F+    + +   L + NA       +   R   EH             I++    
Sbjct: 168 ----RFVAGCYRRYQRALEQANALDFDDLILVTHRLLTEHHDLLETLQQRWQHILVDEYQ 223

Query: 237 GSIPATARLMSTVANHPNGAI--VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
            + P+   L+  +    +G    +    D       +        N  + +   +     
Sbjct: 224 DTDPSQHALIELLTRPAHGRPRSLFVVGDGMQSIYGFRNADHSIINRFADDFPDAK---- 279

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
                +  LD      + + + +  +   S  ++                +  +      
Sbjct: 280 -----VIELDTNYRSRQPILDAAYAVIRHSRTVA---------------PMALRAAGGGV 319

Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGIN 412
               + + E+ N REEA  IA ++     + +  ++ A++   R+++R ++  L    I 
Sbjct: 320 AERCLLIHESKNGREEAEQIARSINELHAQGRRLREMAILYRTRHMSRTIEAALRHARIA 379

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            ++  G+          + + L  I    D +++  +   P    G        A  A  
Sbjct: 380 YNVRGGVGFYDRAVVRDVLAYLRVIANPADNLSLVRIANVPARGLGGQAIAHLSAFAAQN 439

Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
            +AL               +  + A           + +           L+  +L+   
Sbjct: 440 EIALSAALAQPAAQQH---LSPKAAEGARRLANLLARWQRMAAGTASPDHLIADVLEQSG 496

Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
            +   +   +      +     +L     ++                             
Sbjct: 497 YMAALENRVSPEDLPDARGHLQELMRAAEEHDS--------------------------- 529

Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
                          ++  +    +   K ++   + +L    ++ L +  + + GL EG
Sbjct: 530 ------------LSSMLQEIALLTSADEKEDERDQVQLLTIHAAKGLEWPFVFVTGLEEG 577

Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR-SLRENNIPTI 711
             P             +S   L+  E+           A     L  +    R       
Sbjct: 578 TLPH-----------ERSIATLEGIEEERRLCYVALTRA--AERLYLSWTPGRNRGQILK 624

Query: 712 ASRWLQRLLVLGGT 725
            SR+L  +L  G  
Sbjct: 625 PSRFLDEILAYGRE 638


>gi|23465762|ref|NP_696365.1| ATP-dependent DNA helicase [Bifidobacterium longum NCC2705]
 gi|23326449|gb|AAN25001.1| widely conserved ATP-dependent DNA helicase; Rep-like protein
           [Bifidobacterium longum NCC2705]
          Length = 1343

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 57/496 (11%), Positives = 127/496 (25%), Gaps = 28/496 (5%)

Query: 183 LAADFLKIASKYWTERLVELNAS---SPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTG 237
              D L    + + +   E N +           L+          +     +++     
Sbjct: 252 RKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGERTRRRYSHVLLDEYQD 311

Query: 238 SIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY-STHPQY 294
           +    A L++ +   +    + V    D       W   +  +  +   +    + +  +
Sbjct: 312 TSTTQAALLAALFHVDASQRSAVNAVGDPFQSIYAWRGASPGAFRMFQQDFHLSAGYKPF 371

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            L+       I  E    L         R        +   + D                
Sbjct: 372 PLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDAPEGTLGVLGFA 431

Query: 355 CFS---DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                 D  +           S A        E K   A++   ++     +  L + G+
Sbjct: 432 TAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKAPVAVLFRSKSHMPEYQAALEQAGL 491

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              +     L        L +LL+      D  ++  L+  P       +  +       
Sbjct: 492 TTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAADLTMLARFAEE 551

Query: 472 ELVALR------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
           +    R            D    +   + R    +    V      L  +  +L   L  
Sbjct: 552 QNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPDVLLRGDLIKLLERLSA 611

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN---------VCLDEHRKLPNLW 576
           H    IT         +   G   + D  +  +  L           +   +HR  P L 
Sbjct: 612 HGRNAITRAAVMLRQVHDAVG-RPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALA 670

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLE 635
                  +  + +   E  +    +   +I  +  L   E     +  +   + ++   +
Sbjct: 671 HMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQ 730

Query: 636 SRLLNFDTLILGGLNE 651
           S+ L +D + + GL  
Sbjct: 731 SKGLEWDAVAVVGLTA 746



 Score = 48.4 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 85/855 (9%), Positives = 220/855 (25%), Gaps = 92/855 (10%)

Query: 151  NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL-------- 202
             + D++ ++        D  +L        + ++A  L + +++  E+  E         
Sbjct: 506  EIRDLMALLHVA-ADHTDTGSLMRLLATPRFTMSAADLTMLARFAEEQNTEQRFQALVQA 564

Query: 203  ---NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-- 257
                  +P     A++R   + +      P ++           +L+  ++ H   AI  
Sbjct: 565  GLAQPDTPANEWAAVVREYRDQVANAVFLPDVL-----LRGDLIKLLERLSAHGRNAITR 619

Query: 258  -------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                   V   +   +   I   I     +I +       +PQ+     L  + +     
Sbjct: 620  AAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALAHMPMD---- 675

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD-NERE 369
              + ++ +             L    + + +   +E++  ++     DV L+    ++  
Sbjct: 676  -AIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQSKGL 734

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSS 428
            E  ++A+    ++     +   +    +       E   +       +A   L+      
Sbjct: 735  EWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGGTEQGHWTAPEYHETADSWLTNPTAVP 794

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            +       I       A   +   P+A             +     ++R   +  + +D 
Sbjct: 795  VPMRADAGILPRFPHDA--DVEADPIA--SLAALDDVELIDDEVFGSMREFGDGVEEVDA 850

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                L +        H    +       +     L+ +                 +    
Sbjct: 851  SGWYLTQAEEYGRRLHADERRLMYVALTRAREDALMTYCAYTGESGRDPSVVPKGSRAAQ 910

Query: 549  SISDWTKLTVTC-LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + W ++      +   +     +  L     GK +                       
Sbjct: 911  PSNFWLEVHDALQAREHAISAQDCVERLQAANAGKPMLISAQGEAIATPEGFFIGEHAAA 970

Query: 608  IITRLIDGETVKPKIEKSSTLFI-----LGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
                ++      P  +  + + +     L       L+    ++   +  +     A   
Sbjct: 971  YGDAVVGEAWQTPITQTDAAVELPWPATLSDAVHEQLSRGIDVIAADSSSLEQHQDAGPL 1030

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS------LRENNIPTIASRWL 716
                 +  D     A+   GQ+  +   A   R L   R        R   +     R  
Sbjct: 1031 LQRAQLLVDDADLMADAASGQSLDEAVKAKAQRILAVGRQNVTSLQARVGGMSEREERLY 1090

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRK-LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
             R ++           + G  +  W  + ++           +    +    +   F   
Sbjct: 1091 WRSIIRPIPRISSPAAEAGTQFHAWAEQFINAGKPDEAVLAYEAESSMPHTGQDAGFVSR 1150

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            + ++ D           L       + P                          +    +
Sbjct: 1151 EAMLAD-----------LAERERQCRKPSTRQ-------------PAVPQPTAQQSASAV 1186

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
                 +    +N      + W+    +             +     +      + +  +G
Sbjct: 1187 SAASATSISSDNATESKLVAWQRRLAE----------SSWAKRIPAWTERAIVVDVPGVG 1236

Query: 896  IHLTGFADRIDLLK------SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
            + + G  D + +        +    + D+KTG  P K         QL +    L A   
Sbjct: 1237 L-VNGKLDAVFIGGLDPSSTTARFTVVDWKTGRRPTKPDDITRKLAQLDMYRLLLAAVEG 1295

Query: 950  SQIDCRKVANLFYIR 964
             ++D    A L+Y+ 
Sbjct: 1296 VELDSID-ATLYYVS 1309


>gi|119964268|ref|YP_946829.1| ATP-dependent DNA helicase PcrA [Arthrobacter aurescens TC1]
 gi|119951127|gb|ABM10038.1| ATP-dependent DNA helicase PcrA [Arthrobacter aurescens TC1]
          Length = 848

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 70/709 (9%), Positives = 184/709 (25%), Gaps = 105/709 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPV 103
             +     T +A  E+R     + G ++  +  I +           +   +  N N  +
Sbjct: 121 GEILAITFTNKAAAEMRERIEALVGARAKGM-WISTFHSSCVRILRREAANVGLNSNFSI 179

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            +    L L  L+    +  P        +                      I  ++ E 
Sbjct: 180 YDSADSLRLITLVAKNLDLDPKKFAPKAIQHK--------------------ISALKNEL 219

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE--RLVELNASSPVGYQIALMRAEAEH 221
              +   +        +    A+  K  ++   +   +   +  +   Y      A AE 
Sbjct: 220 IDADSYVS-SANHNDPFEQAVAEVFKGYTQRLRQANAMDFDDLIAETVYMFRAFPALAES 278

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHP-----NGAIVLPGLDCHIPTAIWNTITE 276
             +     +++     +  A   L+  +           + +    D       +     
Sbjct: 279 YRR-RFRHVLVDEYQDTNHAQYALVREIVGLGTDTGVEPSELTVVGDSDQSIYAFRGADI 337

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++          + +P     KL       +  +    +V +    R             
Sbjct: 338 RNIVEFE-----ADYPNARTIKLEQNYRSTQNILSAANSVISRNPNRQ------------ 380

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALIT 393
                    E ++   +     +     +NE +EA  IA  +    DE        A+  
Sbjct: 381 ---------EKRLWTAEGDGEKIVGYVGENEHDEAQFIAKEIDRLQDEEGLRPGDVAIFY 431

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R ++  L R G+   +  G             + L  +   +D + +  ++  P
Sbjct: 432 RTNAQSRSIEDVLVRVGLPYKVVGGTRFYERKEIKDALAYLRVLVNPDDDVNLRRVLNEP 491

Query: 454 LAKFGFPEKYLSRAKNALELV-ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
               G   +    A    E    +   + +     + +  ++ +             +  
Sbjct: 492 KRGIGDRAEGAVAALAERERTSFMTAARRADQAPGMATRSVNAVLGFVKLLDDLAEVASG 551

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
           S     L  +L                +++       +    +       +  L E  + 
Sbjct: 552 SGAAAALEAVLEQTGYLAGLRASNDPQDESRVENLAELVAVVREYERDNPDGSLGEFLEQ 611

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
            +L             +  I        +A                  + ++   + ++ 
Sbjct: 612 VSL----------VADADQIPDAPGADIDAAVA---------------EAKRMGVVTLMT 646

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L F  + L G+  G++P   +                  ++   +    +    
Sbjct: 647 LHTAKGLEFPVVFLTGMEHGIFPHQRS--------------ATDPKELAEERRLAYVGLT 692

Query: 693 GTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
             R  +Y      RS+   +    AS++L+ +         + + ++  
Sbjct: 693 RARQRLYVTRSEVRSMWGQSQYNPASQFLEEIPSELVEWKREGMSRQAA 741


>gi|325838896|ref|ZP_08166702.1| ATP-dependent DNA helicase PcrA [Turicibacter sp. HGF1]
 gi|325490637|gb|EGC92948.1| ATP-dependent DNA helicase PcrA [Turicibacter sp. HGF1]
          Length = 741

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 88/725 (12%), Positives = 209/725 (28%), Gaps = 118/725 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADL-LLSYNLNPP 102
           ++     T +A +E++    ++ G   K      I +   +       D+ L+ Y+LN  
Sbjct: 54  NILAITFTNKAAREMKERVEKLIGDRGKDVW---ISTFHSMCVRILRRDIDLIGYDLNFG 110

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           + +    L +   I     +L    K   P+  L+   +  N +   ++L       E E
Sbjct: 111 ILDDTDQLSV---IKTVMEELNLDPKRQSPKYFLNQISNAKNELKTPRDLRK---EFENE 164

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
           +                             + + + L + N        +  +    +  
Sbjct: 165 DV------------------------IRVYEKYQQVLFKNNRVDFDDLLMLTVHLFEKEP 200

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I I     +  A   ++  +A       V+   D       W     +
Sbjct: 201 EVLAFYQNKFQYIHIDEYQDTNNAQYTIVKMLAKKFRNICVV--GDSDQSIYSWRGANIE 258

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +            +P  ++  L      K+  +    +V     GR              
Sbjct: 259 NILSFE-----HDYPDATVVLLEQNYRSKQMILNAANDVIKNNSGRR------------- 300

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSALIT 393
                   + K+ + +     +    A +   EA  IA  +    R + +    + A++ 
Sbjct: 301 --------DKKLWSDRGVGDVIEYYRATDGDVEATYIADKISYMHRDAHE--YHEFAVLY 350

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              + +R ++  L R  I   +  G           L + L  I   +D ++ A +V  P
Sbjct: 351 RTNSQSRAIEQALLRQNIPYRLVGGQSFFKRKEIKDLMAYLRLILNPDDDLSFARVVNEP 410

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G       +   A   ++   +                     + T V    +   
Sbjct: 411 KRGIGATSVDKLKVFAAESELSCMASIQ-------------------DATGVIPKATLNK 451

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
             D +  + ++   +   + +         T     + D  + T+     +   E  K  
Sbjct: 452 MMDFKTMIYMMRMEMDTYSMVELIDMVLERTGYLQMLKD--EKTIEADSRIDNLEEFKSM 509

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK-PKIEKSSTLFILG 632
              FEE+   L     +  E    +  + ++   ++  L+    V+  +    S + ++ 
Sbjct: 510 AGHFEEQELDLILAEEESEERAEDLPTS-VKLTILLNDLMLQTDVETEEESNESKVTLMT 568

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L F  + L G  +GV+P  +A       + +                  +    
Sbjct: 569 IHAAKGLEFPVVFLCGFEDGVFPLRSAIEEGADELEEER-------------RLAYVAIT 615

Query: 693 GTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
               ++      +R    N      S +++ +           ++ R +     +  L+ 
Sbjct: 616 RAEDILIITNAQSRYQYGNRTANPESMFIREISEEYLNK--TGVQSRPRPSFSLSEVLEP 673

Query: 748 TTKQP 752
             ++P
Sbjct: 674 KKEEP 678


>gi|260552489|ref|ZP_05825865.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
 gi|260405296|gb|EEW98792.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
          Length = 679

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 78/688 (11%), Positives = 177/688 (25%), Gaps = 110/688 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +T    T +A +E++    ++  ++      + +           +L  +  L    S 
Sbjct: 53  RITAMTFTNKAAREMKERVTKLLSREEAKGLSVSTFHTFGLNLLRLELK-NLPLKANFSI 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +      A         L         ES   +  +         +L  + +   +  + 
Sbjct: 112 LD-----ADDCKRILMDLMHRDNLSGAESKELIAKAMKKISDWKNDLI-LPEQAHSTCET 165

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY-----QIALMRAEAE 220
            ED+                       + +   L   NA           ++    AE  
Sbjct: 166 PEDVQ-----------------FAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVR 208

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     +  A   L+  +             D       W     ++  
Sbjct: 209 DKWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMG--QFTAVGDDDQSIYAWRGAKPENMA 266

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
           +   +                                 ++       S+     +     
Sbjct: 267 LLKQDFPN--------------------------LHIIKLEQNYRSTSRILKAANCVIQN 300

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRN 397
           N  I + K+ + +     + +I   N+ +EA  +   L      N K     A++     
Sbjct: 301 NPHIFDKKLWSDKGHGEVIRIITCRNDDDEAERVVKDLLTHKLMNGKNWKDYAVLYRGNF 360

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            AR ++ +L +  I   +S G           + S L  I    D  A   ++  P    
Sbjct: 361 QARVLETQLRQMQIPYKLSGGTSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAI 420

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G               ++                +L   + Q+ +  +P        E  
Sbjct: 421 GPVTLEKLGLFAQENNLS----------------LLGASSDQRLSMVLPKKAETQLHEFA 464

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +        +L+   P+   +   N               +  ++       ++   L  
Sbjct: 465 DFIATFTRELLEDDEPVPKVRQMMNE-----------AGYIDYIREQSATPAQEKSKLDN 513

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            E   T         E        ++    ++  L++ +    + E +  + +L    ++
Sbjct: 514 IENLFTSIQNLINRAEDVDEKNIESVIRKLVLLDLLEQQ---QEEEDTDKVNLLTLHAAK 570

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696
            L F  + + GL E + P   +                 AE    +    +      R  
Sbjct: 571 GLEFPFVYIMGLEEELLPHKNSI---------------AAETIEEERRLMYVGITRARQG 615

Query: 697 LIYTRSLRENNI----PTIASRWLQRLL 720
           L  T + +  N         SR+L  L 
Sbjct: 616 LTLTLAEQRKNGGQMKQMTPSRFLDELP 643


>gi|152964726|ref|YP_001360510.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans
           SRS30216]
 gi|151359243|gb|ABS02246.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans
           SRS30216]
          Length = 773

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 69/698 (9%), Positives = 177/698 (25%), Gaps = 114/698 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T +A  E+R     + G    +      +              + +L    S
Sbjct: 82  GEVLAITFTNKAAAEMRERVGALVGDVVGMGARSMWVSTFHSACVRILRREATHLGMRTS 141

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                   ++ ++    +  D+    +                +A  ++++ + +  EE 
Sbjct: 142 FSIYDSADSQRLMAMVGRELDLDPKKHAP------------RAMAAMVSNLKNELVDEET 189

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
            ++  ++    +           L    + + +RL + NA       ++ +         
Sbjct: 190 FFDRANSEGGTE-------TERVLARVYRTYQQRLRQANAMDFDDLIMSTVHLLQAFPDV 242

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI----VLPGLDCHIPTAIWNTIT 275
               +     +++     +  A   L+  +     G +    +    D       +   T
Sbjct: 243 AEHYRRRFRHVLVDEYQDTNHAQYVLVKELVGTGEGPVPRGELTVVGDADQSIYAFRGAT 302

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++      +                               +  +              +
Sbjct: 303 IRNIVEFEQDYPD--------------------------ATTVLLEQNYRSTQNILTAAN 336

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALI 392
                N D     +         +    AD+E +EA  +A     L  +     K  A+ 
Sbjct: 337 EVIKLNDDRRPKNLWTAAGAGEQIVGYVADDEHDEAAFVAEEVDRLHDAGALKYKDVAVF 396

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R ++    R G+   +  G             + L  +   +D + +  ++  
Sbjct: 397 YRTNAQSRSLEEVFIRTGLPYKVVGGTRFYERREVKDAVAYLRVLDNPDDTVNLRRVINV 456

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P    G   +         E +                                      
Sbjct: 457 PKRGIGERAEAALVVLADRERIGFNA---------------------------------- 482

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
           + E  + A+ LV   L  I        +  +   + +           L+        + 
Sbjct: 483 ALERADEAIGLVSRSLNAIKGFAQLIADLRTLAESGAAPSVV--LEAVLEQTGYLAELRA 540

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCI--KANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
                +E      S    + E  S    +    ++++ ++ + D + +    E    + +
Sbjct: 541 SADPQDESRVENLSELVAVAEEFSEENPEGTLSDFLERVSLVADADQIPVGAEDDGVVTL 600

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L F  + L G+ +G +P   +              L   ++   +    +  
Sbjct: 601 MTLHTAKGLEFPVVFLTGMEDGTFPHTRS--------------LGDPDQLAEERRLAYVG 646

Query: 691 ANGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723
               R  +Y      RS          SR+L  +    
Sbjct: 647 LTRARERLYLSRSAVRSAWGAPQQYPPSRFLDEVPATL 684


>gi|292486682|ref|YP_003529552.1| DNA helicase II [Erwinia amylovora CFBP1430]
 gi|291552099|emb|CBA19136.1| DNA helicase II [Erwinia amylovora CFBP1430]
          Length = 723

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 78/709 (11%), Positives = 173/709 (24%), Gaps = 118/709 (16%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK--STILPIIKSLG 82
           +L   +      +  +P  + +VT    T +A  E+R    ++ G +        I +  
Sbjct: 41  VLVHRIAWLMEVENCSPHSIMAVT---FTNKAAAEMRHRIEQLIGTRQGGMW---IGTFH 94

Query: 83  DVVEEKFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
            +      A  L +        + +  +L  L RLI                        
Sbjct: 95  GLAHRLLRAHHLDARLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPARQGMWYINGKKD 154

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                +            IE+     E                         + + E   
Sbjct: 155 EGLRPMH-----------IESYGNPIE--------------QTWLR----IYQAYQEACD 185

Query: 201 ELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                      +                +     I++     +       +  +A     
Sbjct: 186 RAGLVDFAELLLRAHELWLNKPHILNHYRERFTNILVDEFQDTNNIQYAWIRMLAGDTGK 245

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            I++   D       W     ++      +   +                          
Sbjct: 246 VIIV--GDDDQSIYGWRGAQVENIQRFLQDFPAAE------------------------- 278

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
            +  +       +      +T    N   L  ++         +A+  A NE +EA  + 
Sbjct: 279 -TIRLEQNYRSTNNILKAANTLIANNNGRLGKELWTEDSDGEPIAIYCAFNELDEARFVV 337

Query: 376 IALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
             +++ +++       A++      +R ++  L +  +   I  G+            + 
Sbjct: 338 NRIKVWMEKGGALNDCAILYRSNAQSRVLEEALLQTSMPYRIYGGMRFFERQEIKDSLAY 397

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L  I   ND  A   +V  P    G     + R                      + L L
Sbjct: 398 LRLISNRNDDAAFERVVNTPTRGIGDRTLDVVRQTARE-----------------RQLTL 440

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
            + A                 ++K LA      + +    + +     +    ++     
Sbjct: 441 WQTARA-------------LLQEKALAGRAASALQRFTELVDSLAQETSDMPLHVQTDRV 487

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            K +   L        +    +   EE    +  +S   E    +   A      +    
Sbjct: 488 IKDSGLWLMYEQEKGEKGQARIENLEELVNATRQYSYQDEDEDLMPLQAFLSHAALEAGE 547

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                         + ++    ++ L F  + + G+ E           F S++   +  
Sbjct: 548 GQADKWQ-----DAVQLMTMHAAKGLEFMQVFIVGMEE---------GMFPSQMSLEEGG 593

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
               E+ +        M   T     TR L    +    SR++  L V 
Sbjct: 594 RLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPVE 642


>gi|291517284|emb|CBK70900.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Bifidobacterium
           longum subsp. longum F8]
          Length = 1343

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 57/496 (11%), Positives = 127/496 (25%), Gaps = 28/496 (5%)

Query: 183 LAADFLKIASKYWTERLVELNAS---SPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTG 237
              D L    + + +   E N +           L+          +     +++     
Sbjct: 252 RKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGERTRRRYSHVLLDEYQD 311

Query: 238 SIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY-STHPQY 294
           +    A L++ +   +    + V    D       W   +  +  +   +    + +  +
Sbjct: 312 TSTTQAALLAALFHVDASQRSAVNAVGDPFQSIYAWRGASPGAFRMFQQDFHLSAGYKPF 371

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            L+       I  E    L         R        +   + D                
Sbjct: 372 PLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDAPEGTLGVLGFA 431

Query: 355 CFS---DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                 D  +           S A        E K   A++   ++     +  L + G+
Sbjct: 432 TAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKAPVAVLFRSKSHMPEYQAALEQAGL 491

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              +     L        L +LL+      D  ++  L+  P       +  +       
Sbjct: 492 TTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAADLTMLARFAEE 551

Query: 472 ELVALR------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
           +    R            D    +   + R    +    V      L  +  +L   L  
Sbjct: 552 QNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPDVLLRGDLVKLLERLSA 611

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN---------VCLDEHRKLPNLW 576
           H    IT         +   G   + D  +  +  L           +   +HR  P L 
Sbjct: 612 HGRNAITRAAVMLRQVHDAVG-RPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALA 670

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLE 635
                  +  + +   E  +    +   +I  +  L   E     +  +   + ++   +
Sbjct: 671 HMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQ 730

Query: 636 SRLLNFDTLILGGLNE 651
           S+ L +D + + GL  
Sbjct: 731 SKGLEWDAVAVVGLTA 746



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 83/856 (9%), Positives = 220/856 (25%), Gaps = 94/856 (10%)

Query: 151  NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL-------- 202
             + D++ ++        D  +L        + ++A  L + +++  E+  E         
Sbjct: 506  EIRDLMALLHVA-ADHTDTGSLMRLLATPRFTMSAADLTMLARFAEEQNTEQRFQALVQA 564

Query: 203  ---NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-- 257
                  +P     A++R   + +      P ++           +L+  ++ H   AI  
Sbjct: 565  GLAQPDTPANEWAAVVREYRDQVANAVFLPDVL-----LRGDLVKLLERLSAHGRNAITR 619

Query: 258  -------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                   V   +   +   I   I     +I +       +PQ+     L  + +     
Sbjct: 620  AAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALAHMPMD---- 675

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD-NERE 369
              + ++ +             L    + + +   +E++  ++     DV L+    ++  
Sbjct: 676  -AIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQSKGL 734

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSS 428
            E  ++A+    ++     +   +    +       E   +       +A   L+      
Sbjct: 735  EWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGGTEQGHWTAPEYHETADSWLTNPTAVP 794

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            +       I           +   P+A             +     ++R   +  + +D 
Sbjct: 795  VPMRADAGILPRFPHDT--DVEADPIA--SLAALDDVELIDDEVFGSMREFGDGVEEVDA 850

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                L +        H    +       +     L+ +                 +    
Sbjct: 851  SGWYLTQAEEYGRRLHADERRLMYVALTRAREDALMTYCAYTGESGRDPSVVPKGSRAAQ 910

Query: 549  SISDWTKLTVTCLQNV-------------CLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
              + W ++                       +  + +      E   T    F       
Sbjct: 911  PSNFWLEVHDALQAREHAISAQDCVERLQAANAGKPMLISAQGEAIATPEGFFIGEHAAA 970

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                     W   IT+      +      S  +    +    ++  D+  L    +    
Sbjct: 971  YGDAVVGEAWQTPITQTDAAVELPWPATLSDAVHEQLSRGIDVIAADSSSLEQHQDAGPL 1030

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
               A+       + +D     +     +A     +A G +++  +   R   +     R 
Sbjct: 1031 LQRAQLLVDDADLMADAASGQSLDEAVKAKAQRVLAAGRQNVT-SLQARVGGMNEREERL 1089

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRK-LDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
              R ++           + G  +  W  + ++           +    +    +   F  
Sbjct: 1090 YWRSIIRPIPRISSPAAEAGTQFHAWAEQFINAGKPDEAVLAYEAESSMPHTGQDAGFVS 1149

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
             + ++ D           L       + P                          +    
Sbjct: 1150 REAMLAD-----------LAERERQCRKPSTRQ-------------PAVPQPTAQQSASA 1185

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
            +     +    +N      + W+    +             +     +      + +  +
Sbjct: 1186 VSAASATSISSDNATESKLVAWQRRLAE----------SSWAKRIPAWTERAIVVDVPGV 1235

Query: 895  GIHLTGFADRIDLLK------SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
            G+ + G  D + +        +    + D+KTG  P K         QL +    L A  
Sbjct: 1236 GL-VNGKLDAVFIGGLDPSSTTARFTVVDWKTGRRPTKPDDITRKLAQLDMYRLLLAAVE 1294

Query: 949  FSQIDCRKVANLFYIR 964
              ++D    A L+Y+ 
Sbjct: 1295 GVELDSID-ATLYYVS 1309


>gi|46191135|ref|ZP_00206689.1| COG0210: Superfamily I DNA and RNA helicases [Bifidobacterium
           longum DJO10A]
 gi|189439817|ref|YP_001954898.1| superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
 gi|189428252|gb|ACD98400.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
          Length = 1343

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 57/496 (11%), Positives = 127/496 (25%), Gaps = 28/496 (5%)

Query: 183 LAADFLKIASKYWTERLVELNAS---SPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTG 237
              D L    + + +   E N +           L+          +     +++     
Sbjct: 252 RKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGERTRRRYSHVLLDEYQD 311

Query: 238 SIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY-STHPQY 294
           +    A L++ +   +    + V    D       W   +  +  +   +    + +  +
Sbjct: 312 TSTTQAALLAALFHVDASQRSAVNAVGDPFQSIYAWRGASPGAFRMFQQDFHLSAGYKPF 371

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            L+       I  E    L         R        +   + D                
Sbjct: 372 PLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDAPEGTLGVLGFA 431

Query: 355 CFS---DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                 D  +           S A        E K   A++   ++     +  L + G+
Sbjct: 432 TAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKAPVAVLFRSKSHMPEYQAALEQAGL 491

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              +     L        L +LL+      D  ++  L+  P       +  +       
Sbjct: 492 TTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAADLTMLARFAEE 551

Query: 472 ELVALR------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
           +    R            D    +   + R    +    V      L  +  +L   L  
Sbjct: 552 QNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPDVLLRGDLVKLLERLSA 611

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN---------VCLDEHRKLPNLW 576
           H    IT         +   G   + D  +  +  L           +   +HR  P L 
Sbjct: 612 HGRNAITRAAVMLRQVHDAVG-RPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALA 670

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLE 635
                  +  + +   E  +    +   +I  +  L   E     +  +   + ++   +
Sbjct: 671 HMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQ 730

Query: 636 SRLLNFDTLILGGLNE 651
           S+ L +D + + GL  
Sbjct: 731 SKGLEWDAVAVVGLTA 746



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 84/856 (9%), Positives = 221/856 (25%), Gaps = 94/856 (10%)

Query: 151  NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL-------- 202
             + D++ ++        D  +L        + ++A  L + +++  E+  E         
Sbjct: 506  EIRDLMALLHVA-ADHTDTGSLMRLLATPRFTMSAADLTMLARFAEEQNTEQRFQALVQA 564

Query: 203  ---NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-- 257
                  +P     A++R   + +      P ++           +L+  ++ H   AI  
Sbjct: 565  GLAQPDTPANEWAAVVREYRDQVANAVFLPDVL-----LRGDLVKLLERLSAHGRNAITR 619

Query: 258  -------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                   V   +   +   I   I     +I +       +PQ+     L  + +     
Sbjct: 620  AAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALAHMPMD---- 675

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD-NERE 369
              + ++ +             L    + + +   +E++  ++     DV L+    ++  
Sbjct: 676  -AIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQSKGL 734

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSS 428
            E  ++A+    ++     +   +    +       E   +       +A   L+      
Sbjct: 735  EWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGGTEQGHWTAPEYHETADSWLTNPTAVP 794

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            +       I       A   +   P+A             +     ++R   +  + +D 
Sbjct: 795  VPMRADAGILPRFPHDA--DVEADPIA--SLAALDDVELIDDEVFGSMREFGDGVEEVDA 850

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                L +        H    +       +     L+ +                 +    
Sbjct: 851  SGWYLTQAEEYGRRLHADERRLMYVALTRAREDALMTYCAYTGESGRDPSVVPKGSRAAQ 910

Query: 549  SISDWTKLTVTCLQNV-------------CLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
              + W ++                       +  + +      E   T    F       
Sbjct: 911  PSNFWLEVHDALQAREHAISAQDCVERLQAANAGKPMLISAQGEAIATPEGFFIGEHAAA 970

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                     W   IT+      +      S  +    +    ++  D+  L    +    
Sbjct: 971  YGDAVVGEAWQTPITQTDAAVELPWPATLSDAVHEQLSRGIDVIAADSSSLEQHQDAGPL 1030

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
               A+       + +D     +     +A     +A G +++  +   R   +     R 
Sbjct: 1031 LQRAQLLVDDADLMADAASGQSLDEAVKAKAQRVLAAGRQNVT-SLQARVGGMNEREERL 1089

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRK-LDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
              R ++           + G  +  W  + ++           +    +    +   F  
Sbjct: 1090 YWRSIIRPIPRISSPAAEAGTQFHAWAEQFINAGKPDEAVLAYEAESSMPHTGQDAGFVS 1149

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
             + ++ D           L       + P                          +    
Sbjct: 1150 REAMLAD-----------LAERERQCRKPSTRQ-------------PAVPQPTAQQSASA 1185

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
            +     +    +N      + W+    +             +     +      + +  +
Sbjct: 1186 VSAASATSISSDNATESKLVAWQRRLAE----------SSWAKRIPAWTERAIVVDVPGV 1235

Query: 895  GIHLTGFADRIDLLK------SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
            G+ + G  D + +        +    + D+KTG  P K         QL +    L A  
Sbjct: 1236 GL-VNGKLDAVFIGGLDPSSTTARFTVVDWKTGRRPTKPDDITRKLAQLDMYRLLLAAVE 1294

Query: 949  FSQIDCRKVANLFYIR 964
              ++D    A L+Y+ 
Sbjct: 1295 GVELDSID-ATLYYVS 1309


>gi|148980787|ref|ZP_01816218.1| exonuclease V subunit gamma [Vibrionales bacterium SWAT-3]
 gi|145961076|gb|EDK26396.1| exonuclease V subunit gamma [Vibrionales bacterium SWAT-3]
          Length = 1139

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 85/745 (11%), Positives = 196/745 (26%), Gaps = 89/745 (11%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I V +    Q L+ E  +  G  + I      L           +L         +   
Sbjct: 15  QILVQSPGMSQWLKMELAKEFGVAANID---FPLPATFIWDMFTQVLPDVPKRSAFNKEA 71

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW- 166
              +L  L+        D    L  +  L      +    LA+ +ADI D       +W 
Sbjct: 72  MTWKLMSLLPA----KLDHPDFLPLQRYLENDEDGSKLYQLAEKIADIFDGYLVYRPEWM 127

Query: 167 ------EDLHALKNEKYGMW--WLLAADFLKIASKYWTERLVE-LNASSPVGYQIALMRA 217
                 E +  L + +      W             + + L +  +           + A
Sbjct: 128 AMWEAGEPVAELIDSEGQQEHPWQPILW-----KALYEQTLSQGQSRYHRGNLYHDFIEA 182

Query: 218 EA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN--- 272
            A  +  ++     + + G +   P     +  +    +  ++           I +   
Sbjct: 183 LANQQGQLQHLPKRLFVFGISSLPPRYMDALKALGEQIDVHLMFTNPSKPYWGDIRDRKY 242

Query: 273 ------------TITEKSTNITSSNTTYSTHP-----------QYSLAKLLDFLDIKRED 309
                        + +    +    +                 Q     LL  +     D
Sbjct: 243 LARVEAQRRKQFALVDGLPQLEGEVSPLKDGIEANIEDELHTSQAVGNSLLASMGKLGRD 302

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK----------CFSDV 359
              L + S+       +  +             ++ E++  +I                +
Sbjct: 303 NLFLLSQSDSEEHEFFIDVERDSLLHQLQADILELEEHQDDHILDSSNHKQVVELGDRSL 362

Query: 360 ALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFG 410
            +    +   E   +   L    D +     +   ++ AD N        +         
Sbjct: 363 TVHACHSPMREVEVLHDQLLAMFDADPTLKPRDIIVMVADINAYSPAIQAVFGNAPGERY 422

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAK 468
           I   IS       +   +    L+           +  L++ P  +A+FG  E    +AK
Sbjct: 423 IPYSISDRTADQESPILTAFMQLIALPNTRCLASELLELLEIPAMMARFGIDEFQFEQAK 482

Query: 469 NALELVALRGNKNSYDIMD-----------LKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
             +E   +R   +S    +           L  +    +    +++              
Sbjct: 483 QWVEEAGIRWGVDSSTATEFDLPATEQNTWLFGIQRMLLGYAMSDSAGLFETEHSPIAAY 542

Query: 518 ELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                +   +   +   +      +       SI  W +  +  + +    E      L 
Sbjct: 543 NEVQGINAELAGKLAYFIDRIAHYRQRLTETQSIDMWRETLLQMIDDFFEVELEGEVVL- 601

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            +     LS L  ++ +     + +       +   + G  +  +      +     +  
Sbjct: 602 -KSIRDALSQLNEQLDDALYEQELSPSIIYQYLNNKLSGARISQRFLAG-QVNFCTLMPM 659

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           R + F T+ L G+N+GV+P++     F     ++    ++             M +    
Sbjct: 660 RSIPFKTVCLLGMNDGVYPRSMPPEGFDLMNGRTRPGDRSRRDDDRYL-FLEAMLSAQEC 718

Query: 697 LIYTRSLRE--NNIPTIASRWLQRL 719
           L  +   R   +N   + S  +  L
Sbjct: 719 LYISYVGRSIQDNTERVPSVLVSEL 743


>gi|117928387|ref|YP_872938.1| RecB family exonuclease [Acidothermus cellulolyticus 11B]
 gi|117648850|gb|ABK52952.1| putative RecB family exonuclease [Acidothermus cellulolyticus 11B]
          Length = 266

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 80/243 (32%), Gaps = 25/243 (10%)

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
              S S     +  P     R I +L   P        + RGTL H ++ +L      + 
Sbjct: 1   MALSPSRAADFMTCPLLYRLRCIDRLPEPPDP-----VSVRGTLVHAVLDQLFDLPPAER 55

Query: 828 TPEINHLM-----------KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
             E    +           +  +   F    +PP     W      +   +   E   + 
Sbjct: 56  VLEKALALVSRSWQELCAARPELADLFADPEMPPSSCDDWLASAADLLRRYFTIENPTR- 114

Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936
            I+     +  +  +   GI L GF DR+D+  +G V I DYKTG  P +   +K +  Q
Sbjct: 115 -IQPTERELLVETQLAD-GIRLRGFVDRLDVAPTGEVRIVDYKTGVAPPESFEEKAL-FQ 171

Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
           L   A      ++ +++    A L  I L     +     +    + +         +  
Sbjct: 172 LKFYAL-----AWWRVNGVVPALLQLIYLGDGQVLRYAPEEADLLAVERKIRALWAAIDR 226

Query: 997 IVT 999
            + 
Sbjct: 227 ALR 229


>gi|322688621|ref|YP_004208355.1| DNA helicase [Bifidobacterium longum subsp. infantis 157F]
 gi|320459957|dbj|BAJ70577.1| DNA helicase [Bifidobacterium longum subsp. infantis 157F]
          Length = 1343

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 57/496 (11%), Positives = 127/496 (25%), Gaps = 28/496 (5%)

Query: 183 LAADFLKIASKYWTERLVELNAS---SPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTG 237
              D L    + + +   E N +           L+          +     +++     
Sbjct: 252 RKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGERTRRRYSHVLLDEYQD 311

Query: 238 SIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY-STHPQY 294
           +    A L++ +   +    + V    D       W   +  +  +   +    + +  +
Sbjct: 312 TSTTQAALLAALFHVDASQRSAVNAVGDPFQSIYAWRGASPGAFRMFQQDFHLSAGYKPF 371

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            L+       I  E    L         R        +   + D                
Sbjct: 372 PLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDAPEGTLGVLGFA 431

Query: 355 CFS---DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                 D  +           S A        E K   A++   ++     +  L + G+
Sbjct: 432 TAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKAPVAVLFRSKSHMPEYQAALEQAGL 491

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              +     L        L +LL+      D  ++  L+  P       +  +       
Sbjct: 492 TTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAADLTMLARFAEE 551

Query: 472 ELVALR------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
           +    R            D    +   + R    +    V      L  +  +L   L  
Sbjct: 552 QNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPDVLLRGDLVKLLERLSA 611

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN---------VCLDEHRKLPNLW 576
           H    IT         +   G   + D  +  +  L           +   +HR  P L 
Sbjct: 612 HGRNAITRAAVMLRQVHDAVG-RPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALA 670

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLE 635
                  +  + +   E  +    +   +I  +  L   E     +  +   + ++   +
Sbjct: 671 HMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQ 730

Query: 636 SRLLNFDTLILGGLNE 651
           S+ L +D + + GL  
Sbjct: 731 SKGLEWDAVAVVGLTA 746



 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 84/856 (9%), Positives = 221/856 (25%), Gaps = 94/856 (10%)

Query: 151  NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL-------- 202
             + D++ ++        D  +L        + ++A  L + +++  E+  E         
Sbjct: 506  EIRDLMALLHVA-ADHTDTGSLMRLLATPRFTMSAADLTMLARFAEEQNTEQRFQALVQA 564

Query: 203  ---NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-- 257
                  +P     A++R   + +      P ++           +L+  ++ H   AI  
Sbjct: 565  GLAQPDTPANEWAAVVREYRDQVANAVFLPDVL-----LRGDLVKLLERLSAHGRNAITR 619

Query: 258  -------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                   V   +   +   I   I     +I +       +PQ+     L  + +     
Sbjct: 620  AAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALAHMPMD---- 675

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD-NERE 369
              + ++ +             L    + + +   +E++  ++     DV L+    ++  
Sbjct: 676  -AIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQSKGL 734

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSS 428
            E  ++A+    ++     +   +    +       E   +       +A   L+      
Sbjct: 735  EWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGGTEQGHWTAPEYHETADSWLTNPTAVP 794

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            +       I       A   +   P+A             +     ++R   +  + +D 
Sbjct: 795  VPMRADAGILPRFPHDA--DVEADPIA--SLAALDDVELIDDEVFGSMREFGDGVEEVDA 850

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                L +        H    +       +     L+ +                 +    
Sbjct: 851  SGWYLTQAEEYGRRLHADERRLMYVALTRAREDALMTYCAYTGESGRDPSVVPKGSRAAQ 910

Query: 549  SISDWTKLTVTCLQNV-------------CLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
              + W ++                       +  + +      E   T    F       
Sbjct: 911  PSNFWLEVHDALQAREHAISAQDCVERLQAANAGKPMLISAQGEAIATPEGFFIGEHAAA 970

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                     W   IT+      +      S  +    +    ++  D+  L    +    
Sbjct: 971  YGDAVVGEAWQTPITQTDAAVELPWPATLSDAVHEQLSRGIDVIAADSSSLEQHQDAGPL 1030

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
               A+       + +D     +     +A     +A G +++  +   R   +     R 
Sbjct: 1031 LQRAQLLVDDADLMADAASGQSLDEAVKAKAQRVLAVGRQNVT-SLQARVGGMNEREERL 1089

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRK-LDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
              R ++           + G  +  W  + ++           +    +    +   F  
Sbjct: 1090 YWRSIIRPIPRISSPAAEAGTQFHAWAEQFINAGKPDEAVLAYEAESSMPHTGQDAGFVS 1149

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
             + ++ D           L       + P                          +    
Sbjct: 1150 REAMLAD-----------LAERERQCRKPSTRQ-------------PAVPQPTAQQSASA 1185

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
            +     +    +N      + W+    +             +     +      + +  +
Sbjct: 1186 VSAASATSISSDNATESKLVAWQRRLAE----------SSWAKRIPAWTERAIVVDVPGV 1235

Query: 895  GIHLTGFADRIDLLK------SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
            G+ + G  D + +        +    + D+KTG  P K         QL +    L A  
Sbjct: 1236 GL-VNGKLDAVFIGGLDPSSTTARFTVVDWKTGRRPTKPDDITRKLAQLDMYRLLLAAVE 1294

Query: 949  FSQIDCRKVANLFYIR 964
              ++D    A L+Y+ 
Sbjct: 1295 GVELDSID-ATLYYVS 1309


>gi|172056768|ref|YP_001813228.1| recombination helicase AddA [Exiguobacterium sibiricum 255-15]
 gi|251764524|sp|B1YKM8|ADDA_EXIS2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|171989289|gb|ACB60211.1| recombination helicase AddA [Exiguobacterium sibiricum 255-15]
          Length = 1183

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 79/898 (8%), Positives = 221/898 (24%), Gaps = 150/898 (16%)

Query: 156  IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
            +  +  E+   + L  L          +    ++  S  + E   +         +   +
Sbjct: 306  MRDLFVEKDGVDYLEDL--RSQLGHVEMIVTLVRSFSAAYLEAKQQRGIVDFSDLEHFAL 363

Query: 216  RAEAE--------HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHI 266
                E         L++     +++     +     R++  V+        +    D   
Sbjct: 364  AILEENGEPTDVARLLQERFIEVLVDEYQDTNEVQERILRLVSKSDEATGNLFMVGDVKQ 423

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +                 +         +   +D+ +    RL  +    +    V
Sbjct: 424  SIYKFRHAEPGLFLNKFKRFQQTE--------VGTRIDLTKNFRSRLEVLDGTNHIFRQV 475

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE---ADNEREEAISIAIALRMSLD 383
            + ++    D  +     +      +  +   ++ L++    + E  EA  IA  +   ++
Sbjct: 476  MDEAVGEIDYDEAAYLRLGNLGYVDSTQVDPELLLVDQTDTNKEELEAQVIATRIIEMVN 535

Query: 384  ------------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
                              E +    L+ +     + +     ++ + +            
Sbjct: 536  DENPYLVFDAKQKRFRKCEYRDIVILVRSRGKRVQALVDVFEQYELPVYADTTGGYFQAT 595

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
               I+ SLL  I      +  A++++ P+      +    RAK+            + + 
Sbjct: 596  EIQIMMSLLKTIDNPLQDIPFASVLRSPIFGLTDRDLGRIRAKSKDGSFYEAAILVAKEQ 655

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              L           + +  +       +E   +    L+  +                  
Sbjct: 656  TPL---------GLRVDEALNQLHHWRTEARGKSLASLIRSLFDQTGYFEYVGCLNGGRS 706

Query: 546  GNLSISDWTKLTVTCL----QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
               +++   +          + +          +   E+         +  +    +  +
Sbjct: 707  RQANLNALYERAHQYEASGYRGLYRFLRLIHRLVERGEDFSEA-RSLGEDEDVVRIMTIH 765

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
              + ++    ++    +  +  K   +  +   ++            L+     K     
Sbjct: 766  QSKGLEFPVTIVSQ--LGKQFNKQDQIQAIQLHKTYG--------IALDAIDPVKRLRSG 815

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIAS------- 713
              L  V++ ++     E    +    +      +  LI   +++      I         
Sbjct: 816  TLLKEVIRREM---DREMKAEEMRVLYVAMTRAKEKLILVGAIKGLEDQLIKWQDQPLDE 872

Query: 714  ---------------------------------RWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                                             RW  R++ L     +  L K  +    
Sbjct: 873  LLLPEMDRRNAKTYADWVVPAVLRNFLLSEDGPRWSFRIIALDEIAPYQELTKMVEQLEH 932

Query: 741  W--TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI----------KQLINDPYAVYAR 788
                 K+D+   +    + +     +   +  + +            +QL    +    R
Sbjct: 933  VRVLEKIDHAGDETLNIQIEAAFAYQYPYQVATDTAAKQTVTELKRTEQLERAAFESTHR 992

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITEL--IKKRINKNTPEINHLMKQIIDSHFEKE 846
            +                 +RGT+ H  +      +    +            +++   +E
Sbjct: 993  QSTYYRTPQFLGPTLTGAERGTVLHLAMQLYESGRSFEEQILDWEQAERISSLEAQTMRE 1052

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--------- 897
             +P     +            L  E             +P    I+S             
Sbjct: 1053 AIPELTTFLASDTGQLFEQRLLAGEVYR---------ELPFTYKIDSARFRSDWHGPSDQ 1103

Query: 898  --LTGFADRIDLLKSGFVDITDYKTGDNPKKET-------AQKLIDPQLSLEAAALKA 946
              + G  D +         + DYK+    +           +     QL+L   AL+A
Sbjct: 1104 AVMQGIVDCLIRDGD-TYILLDYKSDQVFETTDNQNQAEVLRTRYATQLNLYQEALEA 1160


>gi|124025096|ref|YP_001014212.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A]
 gi|123960164|gb|ABM74947.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A]
          Length = 805

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 69/724 (9%), Positives = 182/724 (25%), Gaps = 123/724 (16%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             +S+     T +A +E++     +  K+ + L   K    +   +      +   ++  
Sbjct: 55  DPSSILAVTFTNKAAREMKDRLELLLAKRLSSLTHGKPWTAL---QVAEQREIRNRIHRE 111

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +S    +     L         D  KD    +                +   +I  I T+
Sbjct: 112 ISRELWIGTFHALFSRLLRFDIDKFKDPEGLTWTKQFSIYDET-----DAQSLIKEIVTQ 166

Query: 163 EKKWE-----------DLHA-----LKNEKYG--MWWLLAADFLKIASKYWTERLVELNA 204
           + + +            +       L  +              +    + + + L   NA
Sbjct: 167 DLQLDPKRFEPKKVRWAISNAKNQCLLPDDLSNNQEGQR-GKLVAETYRLYRKALAANNA 225

Query: 205 SSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA--------- 250
                      Q+     +           +++     +      L+  +          
Sbjct: 226 LDFDDLLLIPVQLLQQNEKIRTYWHSRFKHVLVDEYQDTNWTQYELIKQLVTNGKDPSSF 285

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
              N   V    D       +     +       +    +      + L+          
Sbjct: 286 QDWNNRSVFVVGDADQSIYSFRAADFRILMGFQEDFGKKSLDNTYDSTLVK--------- 336

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                    +       S      ++    N + ++  +   +     + L   D+E  E
Sbjct: 337 ---------LEENYRSTSTILEAANSLISNNKERIDKVLRATRGEGEPIRLTRCDDEIAE 387

Query: 371 AISIAIALR----MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
           A ++   LR     + + N    A++      +R ++  L R+ I   +  G+       
Sbjct: 388 AEAVIHRLRILDASNPELNWGDMAILYRTNAQSRAIEDSLVRWSIPYIVVGGLRFYDRRE 447

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              L + L  +   +D +++  ++  P                                 
Sbjct: 448 IKDLLAYLRLLINPSDSVSLLRVLNVP-------------------------------KR 476

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            +    + R++   +   +P W+     E            L   + L+    +   +  
Sbjct: 477 GIGKTTVQRLSDAASQLKIPLWEVVNDPEAVRSLAGRSAKGLLIFSELINELQSHLLSSS 536

Query: 547 NLSISDW-TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
              +     + +    + +              +E    +  + +  E            
Sbjct: 537 PAELVQLVLEKSGYLSELIATGTDEAEERRRNLQELVNAALQYQEESEDA--------NL 588

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
              ++          K   S+ + ++    S+ L F  + L G+ +G++P   +      
Sbjct: 589 EGFLSTAALSSDADNKDTASNRVTLMTLHSSKGLEFPVVCLVGMEQGLFPSYRS------ 642

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN------NIPTIASRWLQRL 719
                   L        +    +      +  ++     E         P IAS +L  +
Sbjct: 643 --------LDDPSSLEEERRLCYVGLTRAKEKLFLFHASERRMWGGMREPAIASIFLSEI 694

Query: 720 LVLG 723
               
Sbjct: 695 PEEL 698


>gi|312133222|ref|YP_004000561.1| uvrd3 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772423|gb|ADQ01911.1| UvrD3 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1343

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 82/755 (10%), Positives = 187/755 (24%), Gaps = 49/755 (6%)

Query: 183  LAADFLKIASKYWTERLVELNAS---SPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTG 237
               D L    + + +   E N +           L+          +     +++     
Sbjct: 252  RKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGERTRRRYSHVLLDEYQD 311

Query: 238  SIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY-STHPQY 294
            +    A L++ +   +    + V    D       W   +  +  +   +    + +  +
Sbjct: 312  TSTTQAALLAALFHVDASQRSAVNAVGDPFQSIYAWRGASPGAFRMFQQDFHLSAGYKPF 371

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             L+       I  E    L         R        +   + D                
Sbjct: 372  PLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDAPEGTLGVLGFA 431

Query: 355  CFS---DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                  D  +           S A        E K   A++   ++     +  L + G+
Sbjct: 432  TAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKAPVAVLFRSKSHMPEYQAALEQAGL 491

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
               +     L        L +LL+      D  ++  L+  P       +  +       
Sbjct: 492  TTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAADLTMLARFAEE 551

Query: 472  ELVALR------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
            +    R            D    +   + R    +    V      L  +  +L   L  
Sbjct: 552  QNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPDVLLRGDLVKLLERLSA 611

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN---------VCLDEHRKLPNLW 576
            H    IT         +   G   + D  +  +  L           +   +HR  P L 
Sbjct: 612  HGRNAITRAAVMLRQVHDAVG-RPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALA 670

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLE 635
                   +  + +   E  +    +   +I  +  L   E     +  +   + ++   +
Sbjct: 671  HMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQ 730

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE------ 689
            S+ L +D + + GL   V   +   +     + +          +     H+        
Sbjct: 731  SKGLEWDAVAVVGLTA-VGFPSNQGDHLKIVLDEHHTGGTEQGHWTAPEYHETADSWLTN 789

Query: 690  -----MANGTRHLIYTRSLRENNIPTIASRWLQRLL--VLGGTDFFDNLKKRGQCYLDWT 742
                 +       I  R   + ++       L  L    L   + F ++++ G    +  
Sbjct: 790  PTAVPVPMRADAGILPRFPHDADVEADPIASLAALDDVELIDDEVFGSMREFGDGVEEVD 849

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
                Y T+   Y R              + +    LI    A           +P   + 
Sbjct: 850  ASGWYLTQAEEYGRRLHADERRLMYVALTRAREDALIT-YCAYTGESGRDPSVVPKGSRA 908

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ----IIDSHFEKENLPPHIDIIWRH 858
               ++     H+ +         ++  E           +I +  E    P    I    
Sbjct: 909  AQPSNFWLEVHDALQAREHAISAQDCVERLQAANAGKPMLISAQGEAIAPPEGFFIGEHA 968

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
                   + +    +   +     V +P    +  
Sbjct: 969  --AAYGDAVVGEAWQTPITQTDAAVELPWPATLSD 1001



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 83/855 (9%), Positives = 220/855 (25%), Gaps = 92/855 (10%)

Query: 151  NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL-------- 202
             + D++ ++        D  +L        + ++A  L + +++  E+  E         
Sbjct: 506  EIRDLMALLHVA-ADHTDTGSLMRLLATPRFTMSAADLTMLARFAEEQNTEQRFQALVQA 564

Query: 203  ---NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-- 257
                  +P     A++R   + +      P ++           +L+  ++ H   AI  
Sbjct: 565  GLAQPDTPANEWAAVVREYRDQVANAVFLPDVL-----LRGDLVKLLERLSAHGRNAITR 619

Query: 258  -------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                   V   +   +   I   I     +I +       +PQ+     L  + +     
Sbjct: 620  AAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALAHMPMD---- 675

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD-NERE 369
              + ++ +             L    + + +   +E++  ++     DV L+    ++  
Sbjct: 676  -AIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQSKGL 734

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSS 428
            E  ++A+    ++     +   +    +       E   +       +A   L+      
Sbjct: 735  EWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGGTEQGHWTAPEYHETADSWLTNPTAVP 794

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            +       I       A   +   P+A             +     ++R   +  + +D 
Sbjct: 795  VPMRADAGILPRFPHDA--DVEADPIA--SLAALDDVELIDDEVFGSMREFGDGVEEVDA 850

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                L +        H    +       +     L+ +                 +    
Sbjct: 851  SGWYLTQAEEYGRRLHADERRLMYVALTRAREDALITYCAYTGESGRDPSVVPKGSRAAQ 910

Query: 549  SISDWTKLTVTC-LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
              + W ++      +   +     +  L     GK +                       
Sbjct: 911  PSNFWLEVHDALQAREHAISAQDCVERLQAANAGKPMLISAQGEAIAPPEGFFIGEHAAA 970

Query: 608  IITRLIDGETVKPKIEKSSTLFI-----LGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
                ++      P  +  + + +     L       L+    ++   +  +     A   
Sbjct: 971  YGDAVVGEAWQTPITQTDAAVELPWPATLSDAVHEQLSRGIDVIAADSSSLEQHQDAGPL 1030

Query: 663  FLSRVMQSDLNLKTAEKYIGQA------AHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                 +  D     A+   GQ+      A    +    R  + +   R   +     R  
Sbjct: 1031 LQRAQLLVDDADLMADAASGQSLDEAVKAKAQRILAAGRQNVTSLQARVGGMSEREERLY 1090

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRK-LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
             R ++           + G  +  W  + ++           +    +    +   F   
Sbjct: 1091 WRSIIRPIPRISSPAAEAGTQFHAWAEQFINAGKPDEAVLAYEAESSMPHTGQDAGFVSR 1150

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            + ++ D           L       + P                          +    +
Sbjct: 1151 EAMLAD-----------LAERERQCRKPSTRQ-------------PAVPQPTAQQSASAV 1186

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
                 +    +N      + W+    +             +     +      + +  +G
Sbjct: 1187 SAASATSISSDNATESKLVAWQRRLAE----------SSWAKRIPAWTERAIVVDVPGVG 1236

Query: 896  IHLTGFADRIDLLK------SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
            + + G  D + +        +    + D+KTG  P K         QL +    L A   
Sbjct: 1237 L-VNGKLDAVFIGGLDPSSTTARFTVVDWKTGRRPTKPDDITRKLAQLDMYRLLLAAVEG 1295

Query: 950  SQIDCRKVANLFYIR 964
             ++D    A L+Y+ 
Sbjct: 1296 VELDSID-ATLYYVS 1309


>gi|292897919|ref|YP_003537288.1| DNA helicase II [Erwinia amylovora ATCC 49946]
 gi|291197767|emb|CBJ44862.1| DNA helicase II [Erwinia amylovora ATCC 49946]
          Length = 720

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 78/709 (11%), Positives = 173/709 (24%), Gaps = 118/709 (16%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK--STILPIIKSLG 82
           +L   +      +  +P  + +VT    T +A  E+R    ++ G +        I +  
Sbjct: 38  VLVHRIAWLMEVENCSPHSIMAVT---FTNKAAAEMRHRIEQLIGTRQGGMW---IGTFH 91

Query: 83  DVVEEKFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
            +      A  L +        + +  +L  L RLI                        
Sbjct: 92  GLAHRLLRAHHLDARLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPARQGMWYINGKKD 151

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                +            IE+     E                         + + E   
Sbjct: 152 EGLRPMH-----------IESYGNPIE--------------QTWLR----IYQAYQEACD 182

Query: 201 ELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                      +                +     I++     +       +  +A     
Sbjct: 183 RAGLVDFAELLLRAHELWLNKPHILNHYRERFTNILVDEFQDTNNIQYAWIRMLAGDTGK 242

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            I++   D       W     ++      +   +                          
Sbjct: 243 VIIV--GDDDQSIYGWRGAQVENIQRFLQDFPAAE------------------------- 275

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
            +  +       +      +T    N   L  ++         +A+  A NE +EA  + 
Sbjct: 276 -TIRLEQNYRSTNNILKAANTLIANNNGRLGKELWTEDSDGEPIAIYCAFNELDEARFVV 334

Query: 376 IALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
             +++ +++       A++      +R ++  L +  +   I  G+            + 
Sbjct: 335 NRIKVWMEKGGALNDCAILYRSNAQSRVLEEALLQTSMPYRIYGGMRFFERQEIKDSLAY 394

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L  I   ND  A   +V  P    G     + R                      + L L
Sbjct: 395 LRLISNRNDDAAFERVVNTPTRGIGDRTLDVVRQTARE-----------------RQLTL 437

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
            + A                 ++K LA      + +    + +     +    ++     
Sbjct: 438 WQTARA-------------LLQEKALAGRAASALQRFTELVDSLAQETSDMPLHVQTDRV 484

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            K +   L        +    +   EE    +  +S   E    +   A      +    
Sbjct: 485 IKDSGLWLMYEQEKGEKGQARIENLEELVNATRQYSYQDEDEDLMPLQAFLSHAALEAGE 544

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                         + ++    ++ L F  + + G+ E           F S++   +  
Sbjct: 545 GQADKWQ-----DAVQLMTMHAAKGLEFMQVFIVGMEE---------GMFPSQMSLEEGG 590

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
               E+ +        M   T     TR L    +    SR++  L V 
Sbjct: 591 RLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPVE 639


>gi|81300977|ref|YP_401185.1| ATP-dependent DNA helicase Rep [Synechococcus elongatus PCC 7942]
 gi|81169858|gb|ABB58198.1| ATP-dependent DNA helicase, Rep family [Synechococcus elongatus PCC
           7942]
          Length = 794

 Score = 81.5 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 55/569 (9%), Positives = 137/569 (24%), Gaps = 86/569 (15%)

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPAT 242
           +    + + ++L   NA       +  ++   ++             +++     +    
Sbjct: 206 IGEVYRRYLDQLAANNALDFDDLLLIPVQLFRQNEQVLAYWHQRFRHVLVDEYQDTNRTQ 265

Query: 243 ARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
             L+  +          +  N   V    D       +             +        
Sbjct: 266 YDLIRLLTTNGAETRDFDQWNHRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD----- 320

Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                                    ++              +     NT+ ++  +   +
Sbjct: 321 --------------RLPDDDTRTMVKLEENYRSTENILQAANELIRNNTERIDKVLRPTR 366

Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTRF 409
                +A   AD+E  EA  +   +R    ++ +      A++      +R  +  L R+
Sbjct: 367 GSGEAIACYRADDEMAEAEYVVQQIRQLEQQHPELNWGDFAILYRTNAQSRAFEDSLVRW 426

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            +   +  G+          + + L AI    D +++  +V  P                
Sbjct: 427 NVPYTVIGGLRFYDRREVKDILAYLRAIANPFDAVSLLRVVNVP---------------- 470

Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                              + +    I    +     +        D E    L     +
Sbjct: 471 ------------------KRGVGKTTIGRLVDAAQELNVPLWEILSDSETVQNLAGRSAK 512

Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEGKTLSSLF 588
            I        +       L  S+  +  +     +   +      +       + L +  
Sbjct: 513 GILEFANLVQHFQDQADELRPSELIRQLLEASGYIAELQRSGTDEDEDRRRNLEELVNAA 572

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            +  E               +    D +           + ++    S+ L F  + L G
Sbjct: 573 VQHEEENDDPSLIGFLGTASLASDADNKEANQ------QVSLMTLHASKGLEFPVVFLVG 626

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
           L +G++P   + +   +   +  L      +        F      R L           
Sbjct: 627 LEQGLFPSFRSLDDPRAVEEERRLCYVGITR---AQERLFLTHASARRLW-----GGGRE 678

Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
           P I S +L  L            +++ Q 
Sbjct: 679 PAIPSNFLSELPAELIVGHSPQTRRQTQA 707


>gi|332874157|ref|ZP_08442081.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
           6014059]
 gi|332737632|gb|EGJ68535.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
           6014059]
          Length = 679

 Score = 81.5 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 77/688 (11%), Positives = 178/688 (25%), Gaps = 110/688 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +T    T +A +E++    ++  ++      + +           +L  +  L    S 
Sbjct: 53  RITAMTFTNKAAREMKERVTKLLSREEAKGLSVSTFHTFGLNLLRLELK-NLPLKANFSI 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +      A         L         ES   +  +         +L  + +   +  + 
Sbjct: 112 LD-----ADDCKRILMDLMHRDNLSGAESKELIAKAMKKISDWKNDLI-LPEQAHSTCET 165

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY-----QIALMRAEAE 220
            ED+                       + +   L   NA           ++    AE  
Sbjct: 166 PEDVQ-----------------FAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVR 208

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     +  A   L+  +             D       W     ++  
Sbjct: 209 DKWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMG--QFTAVGDDDQSIYAWRGAKPENMA 266

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
           +   +                                 ++   S   S+     +     
Sbjct: 267 LLKQDFPN--------------------------LHIIKLEQNSRSTSRILKAANCVIQN 300

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRN 397
           N  I + K+ + +     + +I   N+ +EA  +   L      N K     A++     
Sbjct: 301 NPHIFDKKLWSDKGHGEVIRIITCRNDDDEAERVVKDLLTHKLMNGKNWKDYAVLYRGNF 360

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            AR ++ +L +  I   +S G           + S L  I    D  A   ++  P    
Sbjct: 361 QARVLETQLRQMQIPYKLSGGTSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAI 420

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G               ++                +L   + Q+ +  +P        E  
Sbjct: 421 GPVTLEKLGLFAQENNLS----------------LLGASSDQRLSMVLPKKAETQLHEFA 464

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +        +L+   P+   +   N               +  ++       ++   L  
Sbjct: 465 DFISTFTRELLEDDEPVPKVRQMMNE-----------AGYIDYIREQSATPAQEKSKLDN 513

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            E   +         E        ++    ++  +++ +    + E +  + +L    ++
Sbjct: 514 IENLFSSIQNLINRAEDVDEKNIESVIRKLVLLDMLEQQ---QEEEDTDKVNLLTLHAAK 570

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696
            L F  + + GL E + P   +                 AE    +    +      R  
Sbjct: 571 GLEFPYVYIMGLEEELLPHKNSI---------------AAETIEEERRLMYVGITRARQG 615

Query: 697 LIYTRSLRENNI----PTIASRWLQRLL 720
           L  T + +  N         SR+L  L 
Sbjct: 616 LTLTLAEQRKNGGQMKQMTPSRFLDELP 643


>gi|189485568|ref|YP_001956509.1| hypothetical protein TGRD_565 [uncultured Termite group 1 bacterium
            phylotype Rs-D17]
 gi|170287527|dbj|BAG14048.1| conserved hypothetical protein [uncultured Termite group 1 bacterium
            phylotype Rs-D17]
          Length = 248

 Score = 81.5 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 84/266 (31%), Gaps = 31/266 (11%)

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR-TDRGTLFHNIITELIKK 822
              Q    S+S +   +  PY            + +     +     G + H  + +    
Sbjct: 1    MRQDFKISYSRVNMYLFCPYKYKLMY------LDNLHIPINADIIFGHIIHKALEKFH-- 52

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF-HKISHSFLEHEEKIQSSIEKI 881
                   +   ++ +  D  +  +       I   +    ++  S+  ++    S  E I
Sbjct: 53   ---VGKEQSYDMLFECYDDAWRNDGFADPQQIFEYYECGRRMLASY--YKSFNASDTEVI 107

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
            +V       I        G  DR+D    G  +I DYKT      E  +   D QLS   
Sbjct: 108  YVEKAFDANI--GKYKFIGIIDRVDRYPDGKYEIVDYKT-HAKIWEQERVDKDLQLSFYV 164

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
             A K       D  K++   Y  L +  KI    +  +   A +++ ++ +    +    
Sbjct: 165  YACKN--VFGFDPDKIS--VY-FLSENKKIYTKRSRSEISDAIDVAIETAE---NVAAEN 216

Query: 1002 QNGEQPFISHLRL--SEKSNIQSEYD 1025
             + +   +S   +   +     S Y 
Sbjct: 217  FDPD---VSKCHMCGFKLKCKFSAYK 239


>gi|83749759|ref|ZP_00946735.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551]
 gi|207743470|ref|YP_002259862.1| homologous recombinational repair protein, atp-dependent exodnase
            (exonuclease v) beta subunit (contains helicase and
            exonuclease domains) [Ralstonia solanacearum IPO1609]
 gi|83723579|gb|EAP70781.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551]
 gi|206594867|emb|CAQ61794.1| homologous recombinational repair protein, atp-dependent exodnase
            (exonuclease v) beta subunit (contains helicase and
            exonuclease domains) [Ralstonia solanacearum IPO1609]
          Length = 1177

 Score = 81.5 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 86/781 (11%), Positives = 183/781 (23%), Gaps = 76/781 (9%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGS 238
              D L    + +  +   ++ +        LMR     A  +  +      +++     +
Sbjct: 364  LGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQVRLDARYKHLLLDEFQDT 423

Query: 239  IPATARLMSTVANHPNGA----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             P   R++        G      V    D       +     +  +              
Sbjct: 424  NPMQWRILQGWLRGYEGTGTRPTVFLVGDPKQSIYRFRRADARLFDAARDMLVAG--FDA 481

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            ++ +           ++ +  V  +   R      +             +L   +P  + 
Sbjct: 482  TVLRTNRTRRNAPAVLEWVNAVFLQARARGDYAIYAEQSTAVDAPAGQALLLPLVPVPEA 541

Query: 355  CFSDVALI--EADNEREEA---------ISIAIALRMSLDENK------------KKSAL 391
              +            REEA           +A  LR      +                L
Sbjct: 542  VQTGETAPRDSLTEPREEAGDSQRYDEGRQVAACLRALHAGERVRENGGERPVRWSDFQL 601

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +   +      +  L   G+         L  TL +  L +LL+ +      + +A +++
Sbjct: 602  LVRRKRYLADYERALRDAGVPYLSPRRGGLLATLEALDLCALLDFLMTPQADLPLAHVLR 661

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             P+      +                G         L +L     A  +           
Sbjct: 662  SPIFAVTDDDLIALA-------QTGEGASAPTWWERLTALAGQPHAAAQLRHAHRLLSRW 714

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            L+         L+DHI+        Y           ++++        L         +
Sbjct: 715  LAVAPTLPVHDLLDHIVYTGELKRRYAERVPEANREQALANLDAFLKLALDLDG----GR 770

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
             P+L              +       ++ +A E  D I   +  E           + IL
Sbjct: 771  YPSLPKFMAELRAIRQGDEEESPDEGVQGDAAEAPDAIDAELASE-------GLDAVQIL 823

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAK---NPFLSRVMQSDLNL--KTAEKYIGQAAH 686
                S+ L    ++L   +      +TA    +        +  +   KTAE+   +   
Sbjct: 824  TVHASKGLEAPFVVLLDSHHSDTRADTAGILIDWLPGAEAPAHFSAFGKTAERGRARDPL 883

Query: 687  DFEMANGTRHL---IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
              + A         +   ++       I S    +          +           W  
Sbjct: 884  FAQEAALAERENWNLLYVAMTRARQALIVSGVANKRDGAAAQVVDEGDVPEVDGSASWYT 943

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND-----PYAVYARRILKLDFIPH 798
             L            +     +A                          A R+        
Sbjct: 944  LLATAGVASPAPAAQADAGGDAVHAGPQAVSYHDFRVPLTVTVRIGGTAERVADAPNAAD 1003

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
               D     +G L H ++  L +    +  P+        I   F    +          
Sbjct: 1004 AIFDQGAVAQGELLHAVLERLTRHGKPEQVPDAAA-----IARWFGATGITDADAARAAE 1058

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
               ++  +         +  +     +         G  L    DR+       V + DY
Sbjct: 1059 AVRRMLAAEALAHVFDAARFDVAHNEVEL---FSPDGALL--RIDRLIERGD-EVLVVDY 1112

Query: 919  K 919
            K
Sbjct: 1113 K 1113


>gi|238021964|ref|ZP_04602390.1| hypothetical protein GCWU000324_01869 [Kingella oralis ATCC 51147]
 gi|237866578|gb|EEP67620.1| hypothetical protein GCWU000324_01869 [Kingella oralis ATCC 51147]
          Length = 1220

 Score = 81.5 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 95/848 (11%), Positives = 208/848 (24%), Gaps = 102/848 (12%)

Query: 193  KYWTERLVELNASSPVG--YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
            + + + L+++  +      +  AL RA + +         +I     + P    +     
Sbjct: 379  RQFDDLLLDVYHALSPEKPHAQALARALSANWQTA-----LIDEFQDTDPLQYAIFQAAF 433

Query: 251  NHPNGAI----------VLPGLDCHIPTAIWNTIT-EKSTNITSSNTTYSTHPQYSLAK- 298
              P                   D       +                  + H      + 
Sbjct: 434  MQPPRQPENKCNQNKTAFYMVGDPKQAIYSFRGADIYAYLAAAEHIPPANRHTLSQNHRS 493

Query: 299  ---LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
               L+  ++                +      S+S LP   + +R T + ++   +    
Sbjct: 494  HAALIHAINALFSRPNPFALDKIPYHPARAARSQSKLPSGEAPLRLTWLNQDPTADDSDT 553

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLELTRFGI 411
             +  A          A  IA+ L             + A++   R     ++ +L    I
Sbjct: 554  LTQRAAQWC------AQEIAVTLHAHAQGKTPISAGQIAILVRTRKEGTLMQRQLKTHHI 607

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
               + +   +     +  + +L++ I        +  L+             L       
Sbjct: 608  QSVLLSRDSIYAEEETQAVYALISFILNPQRTQHLIYLLSG----------CLYNHTALQ 657

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                 +         D  +            T +  +  +   E   L+      +    
Sbjct: 658  IQQLNQNEAQLTQWTDAANQAAQTWQQHGVYTALQQFLRQFQAETTLLSQRNDRTLTNLH 717

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
              L              ++  W    +   QN    +   L  L  +E    + ++ +  
Sbjct: 718  QILEILAAQDEKGQPPSALQQWLGQQIQASQNHANPQDHALLRLESDENLVKIVTMHAAK 777

Query: 592  IETGSCIKANAIE---------WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
                  +    +          W  I          K ++  S          S  L   
Sbjct: 778  GLQYPVVYCPFVWKARNQQPPEWQIIHQNHQAQLIHKTQLTDSDQQQAQTEQRSEDLRLL 837

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK---YIGQAAHDFEMANGTRHLIY 699
             + L    E +     +     +  +   +  +  EK      + AH    A       +
Sbjct: 838  YVALTRAEEQLNIYIASYPQTENSPLAYLIQHQQPEKGKSKKDEYAHLQAQAYRQSWQNF 897

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
                 E+               L  ++   N     +      R              + 
Sbjct: 898  IAQHPEHIQWHDTLTLPTYTGSLKTSEPQTNEPTTYRATPIPPRSYRSPQHTSFTALSRH 957

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                  +      SE      +P        LK D  P   + P  T  G   H+++   
Sbjct: 958  STTQPTEHTPLDPSEQTTQPQNPQG-----SLKPDDPPTIAQFPQGTAAGICLHSLLERY 1012

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPH--IDIIWRHLFHKISHS----------- 866
               +  +   +   L++  +D H             +I       +              
Sbjct: 1013 PFAQPGR---QNLPLIQTTLDQHNINSQQWQDTIAQLIEDTRHTPLLPRTSLSTLPPQNI 1069

Query: 867  -----FLEHEE-----------KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
                 FL H                S +          ++   +  ++ G+ D +   ++
Sbjct: 1070 LTEFGFLLHTRNFTLGSLKTWFAQHSKLPPEITAAAQNLSFRDVQGYINGYIDLLAQTET 1129

Query: 911  GFVDITDYKT---GDNPK--------KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
            G   I DYK+   G++P         +  AQ     Q  L A A      S+    +  +
Sbjct: 1130 GDTLILDYKSNWLGNSPSDYTQAALNQAIAQHHYALQALLYAIATARYLTSRNAQPQTIH 1189

Query: 960  LFYIRLKQ 967
            + Y+ L+ 
Sbjct: 1190 IRYLFLRG 1197


>gi|116071601|ref|ZP_01468869.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. BL107]
 gi|116065224|gb|EAU70982.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. BL107]
          Length = 798

 Score = 81.5 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 75/772 (9%), Positives = 189/772 (24%), Gaps = 119/772 (15%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF----IEITGKKSTILPIIKSL 81
           L   +         +P     +     T +A +E++        +   +     P   +L
Sbjct: 36  LTHRIAHLIGEHGADP---GQILAVTFTNKAAREMKERLELLLAQRLAQSQFGQP-WSTL 91

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             V + +  + +         +     L   AR++    +K  D   D    +       
Sbjct: 92  PPVEQRQLRSRIYREITKELWIGTFHALF--ARMLRFDIDKFRD--PDGLTWTKQFSIYD 147

Query: 142 PANAIWLAKNLAD-----------------IIDIIETEEKKWEDLHALKNEKYGMWWLLA 184
            A+A  L K +                    I   + +    + L A    +        
Sbjct: 148 EADAQSLVKEIVTQELQMDPKRFEPKKVRWAISNAKNQGWLPDQLEANAEGQR------- 200

Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSI 239
                   + + + L   NA       +  +       +           +++     + 
Sbjct: 201 GKLTADVYRRYRKALAANNALDFDDLLLLPVQLLQQNEQVRRYWHRRFCHVLVDEYQDTN 260

Query: 240 PATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
                L+  +          +  +G  V    D       +             +     
Sbjct: 261 RTQYDLIKLLVTDGKEPQAYDDWSGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGDQA 320

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
               +  + +  L+        +   +N +   +                 ++ ++  + 
Sbjct: 321 PDDAT--RTMVKLEENYRSTATILAAANALISNN-----------------SERIDKVLR 361

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLEL 406
             +     + L   D+E  EA ++   LRM    N        A++      +R ++  L
Sbjct: 362 PTRGEGELITLTRCDDEIAEAEAVVHRLRMMEAANPDLSWGDMAVLYRTNAQSRAMEESL 421

Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
            R+GI   +  G+          L + L  +    D +++  ++  P             
Sbjct: 422 VRWGIPYIVVGGLRFYDRREIKDLLAYLRLLVNPADTVSLLRVINVP------------- 468

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                     +       I  L            +    P     L     +  +   + 
Sbjct: 469 ----------KRGIGKTTIQRLTDAANQLGIPLWDVVSDPEAVRSLGGRSAKGLLQFCEL 518

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           +          KT   +   +  +    + +    + +              +E    + 
Sbjct: 519 VN-------DLKTQVQAVAPSELLQQVMEKSGYVSELIAEGTDEAEERRRNLQELVNAAL 571

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            + +        + +       +           K   +  + ++    S+ L F  + L
Sbjct: 572 QYQE--------ENDDGNLEGFLASAALSSDADNKDTAADRVTLMTLHSSKGLEFPVVCL 623

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
            GL +G++P   + +   S   +  L      +   +        +          +RE 
Sbjct: 624 VGLEQGLFPSYRSLDDPASLEEERRLCYVGITRAKERLF-----LSHASERRLWGGMREA 678

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
               + S +L  L                        +L    +      P 
Sbjct: 679 ---AVPSVFLSELPEALVQGDLPQTGGAALRRERRLDRLTRVDRDQPSSAPA 727


>gi|227546375|ref|ZP_03976424.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239622378|ref|ZP_04665409.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|227213356|gb|EEI81228.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239514375|gb|EEQ54242.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 1343

 Score = 81.5 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 57/496 (11%), Positives = 127/496 (25%), Gaps = 28/496 (5%)

Query: 183 LAADFLKIASKYWTERLVELNAS---SPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTG 237
              D L    + + +   E N +           L+          +     +++     
Sbjct: 252 RKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGERTRRRYSHVLLDEYQD 311

Query: 238 SIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY-STHPQY 294
           +    A L++ +   +    + V    D       W   +  +  +   +    + +  +
Sbjct: 312 TSTTQAALLAALFHVDASQRSAVNAVGDPFQSIYAWRGASPGAFRMFQQDFHLSAGYKPF 371

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            L+       I  E    L         R        +   + D                
Sbjct: 372 PLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDAPEGTLGVLGFA 431

Query: 355 CFS---DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                 D  +           S A        E K   A++   ++     +  L + G+
Sbjct: 432 TAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKAPVAVLFRSKSHMPEYQAALEQAGL 491

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              +     L        L +LL+      D  ++  L+  P       +  +       
Sbjct: 492 TTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAADLTMLARFAEE 551

Query: 472 ELVALR------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
           +    R            D    +   + R    +    V      L  +  +L   L  
Sbjct: 552 QNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPDVLLRGDLVKLLERLSA 611

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN---------VCLDEHRKLPNLW 576
           H    IT         +   G   + D  +  +  L           +   +HR  P L 
Sbjct: 612 HGRNAITRAAVMLRQVHDAVG-RPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALA 670

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLE 635
                  +  + +   E  +    +   +I  +  L   E     +  +   + ++   +
Sbjct: 671 HMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQ 730

Query: 636 SRLLNFDTLILGGLNE 651
           S+ L +D + + GL  
Sbjct: 731 SKGLEWDAVAVVGLTA 746



 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 84/856 (9%), Positives = 221/856 (25%), Gaps = 94/856 (10%)

Query: 151  NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL-------- 202
             + D++ ++        D  +L        + ++A  L + +++  E+  E         
Sbjct: 506  EIRDLMALLHVA-ADHTDTGSLMRLLATPRFTMSAADLTMLARFAEEQNTEQRFQALVQA 564

Query: 203  ---NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-- 257
                  +P     A++R   + +      P ++           +L+  ++ H   AI  
Sbjct: 565  GLAQPDTPANEWAAVVREYRDQVANAVFLPDVL-----LRGDLVKLLERLSAHGRNAITR 619

Query: 258  -------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                   V   +   +   I   I     +I +       +PQ+     L  + +     
Sbjct: 620  AAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALAHMPMD---- 675

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD-NERE 369
              + ++ +             L    + + +   +E++  ++     DV L+    ++  
Sbjct: 676  -AIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQSKGL 734

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSS 428
            E  ++A+    ++     +   +    +       E   +       +A   L+      
Sbjct: 735  EWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGGTEQGHWTAPEYHETADSWLTNPTAVP 794

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            +       I       A   +   P+A             +     ++R   +  + +D 
Sbjct: 795  VPMRADAGILPRFPHDA--DVEADPIA--SLAALDDVELIDDEVFGSMREFGDGVEEVDA 850

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                L +        H    +       +     L+ +                 +    
Sbjct: 851  SGWYLTQAEEYGRRLHADERRLMYVALTRAREDALMTYCAYTGESGRDPSVVPKGSRAAQ 910

Query: 549  SISDWTKLTVTCLQNV-------------CLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
              + W ++                       +  + +      E   T    F       
Sbjct: 911  PSNFWLEVHDALQAREHAISAQDCVERLQAANAGKPMLISAQGEAIATPEGFFIGEHAAA 970

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                     W   IT+      +      S  +    +    ++  D+  L    +    
Sbjct: 971  YGDAVVGEAWQTPITQTDAAVELPWPATLSDAVHEQLSRGIDVIAADSSSLEQHQDAGPL 1030

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
               A+       + +D     +     +A     +A G +++  +   R   +     R 
Sbjct: 1031 LQRAQLLVDDADLMADAASGQSLDEAVKAKAQRVLAAGRQNVT-SLQARVGGMNEREERL 1089

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRK-LDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
              R ++           + G  +  W  + ++           +    +    +   F  
Sbjct: 1090 YWRSIIRPIPRISSPAAEAGTQFHAWAEQFINAGKPDEAVLAYEAESSMPHTGQDAGFVS 1149

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
             + ++ D           L       + P                          +    
Sbjct: 1150 REAMLAD-----------LAERERQCRKPSTRQ-------------PAVPQPTAQQSASA 1185

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
            +     +    +N      + W+    +             +     +      + +  +
Sbjct: 1186 VSAASATSISSDNATESKLVAWQRRLAE----------SSWAKRIPAWTERAIVVDVPGV 1235

Query: 895  GIHLTGFADRIDLLK------SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
            G+ + G  D + +        +    + D+KTG  P K         QL +    L A  
Sbjct: 1236 GL-VNGKLDAVFIGGLDPSSTTARFTVVDWKTGRRPTKPDDITRKLAQLDMYRLLLAAVE 1294

Query: 949  FSQIDCRKVANLFYIR 964
              ++D    A L+Y+ 
Sbjct: 1295 GVELDSID-ATLYYVS 1309


>gi|89899997|ref|YP_522468.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
 gi|89344734|gb|ABD68937.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
          Length = 1112

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 99/850 (11%), Positives = 212/850 (24%), Gaps = 117/850 (13%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             + + +   T +A  EL     +    ++          DV    F A  L        
Sbjct: 240 DPSHILVLTFTNKAAFELVDRLRDANIHRA---------SDVWAGTFHAFGLDFLRKYHQ 290

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
              ++  L++A  +        ++     P+  L+      +      ++ + I  ++ E
Sbjct: 291 CFGLESDLKVADRLNAITILNQEL-----PKVELTHYRRVQDPYDWLPDVVNSIKRLKEE 345

Query: 163 EKKWE----DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
               E     +  L   + G       + +    + +   L E      V       +A 
Sbjct: 346 MVSPEAYRLAIQGLPTAEPGRRECR--EDVASLYECYERALRERKMVDFVDLVAKPAKAI 403

Query: 219 AE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            +       +      +++        A   L+S +A +     V+   D       W  
Sbjct: 404 EQDRPQYSELADKFQHVLVDEYQDVTHAMVELISQLAKNAKSLWVV--GDVRQAIHHWRG 461

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLD-FLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
            +  S    +         Q    K+    L   R     +  +  +   R ++ + S  
Sbjct: 462 ASVHSLTKFNERFEA----QAGSGKIKTYPLAFNRRSSSEILELVKQAGKRHILETTSLK 517

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +T+     +                 L+          +IA  +     E     K A
Sbjct: 518 LENTTATSGPNGHPP------------TLVSCFPFVSMPDAIAAGIHELHSEGVPFGKQA 565

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++         V   L R GI +       L+       L  L+  + +     A+  L+
Sbjct: 566 VLNRWNYELGMVAAGLRRVGIPVLHIG--ELAQRPEVKTLLCLMQLMVERL-PRALVGLM 622

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
                   F +          + +  RG        DL       + T     +    +S
Sbjct: 623 GDARLAVDFEDFQKLMELCEEDPLLQRGAWLDDLPEDLSPQSRSVLVTIARLLNGQWRRS 682

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                  +L +               +     +     + S    L          D  R
Sbjct: 683 NPWGFVCDLLLE------------HRFGYPPRADVSIEAHSLRIALWQFAYATRTGDGER 730

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
           K P L                            +    I        +  ++     + +
Sbjct: 731 KFPTL---------------------PRFLLRQQLRQRIGETYSERELPAEVAAIDAVRL 769

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNP--------FLSRVMQSDLNLKTAEKYIG 682
           L    S+ L FD++ +  +N   +                    V++S       E  + 
Sbjct: 770 LSIHGSKGLEFDSVHVNNVNTDDYGPKGRYWESPSEASRLVPPEVLRSSQETWNFEATVE 829

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
           +    +   +  R  ++     E+                       +        L + 
Sbjct: 830 RNNLLYVALSRARKRLFMYQNGEDTRKGAP---------------QLSPPSAPVRALSFN 874

Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
             +     Q    RP    P         F E +  +  P   + R  L+L         
Sbjct: 875 GTVTAPAGQAPIPRPPLTEP-------LPFDEFETFVRCPLQHWYRFELRLAGEQGVDIA 927

Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---HL 859
                        + +  K   +     +     + + SH E   L  H   ++     +
Sbjct: 928 IKARWAVMAALKALAQ--KPGSSPKEAFMAEWESRKLPSHTEDLQLWTHATAVFWDGLAI 985

Query: 860 FHKISHSFLE 869
               + +F+E
Sbjct: 986 IKASAGAFVE 995


>gi|158317729|ref|YP_001510237.1| ATP-dependent DNA helicase PcrA [Frankia sp. EAN1pec]
 gi|158113134|gb|ABW15331.1| ATP-dependent DNA helicase PcrA [Frankia sp. EAN1pec]
          Length = 851

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 75/699 (10%), Positives = 167/699 (23%), Gaps = 95/699 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E++     I G ++  +  + +          ++            
Sbjct: 116 GEILAITFTNKAAGEMKERVEAIVGGRARAM-WVSTFHSACVRILRSEA----------- 163

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                   +RL       + D        + ++  +        A+ LA  I  ++ E  
Sbjct: 164 --------SRLGFGSSFSIYDAADAQRLITLVTRDLDLDPKRHTARGLAAAISALKNELV 215

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
            WE                    +      + +RL + NA       +  +         
Sbjct: 216 DWETARDRATNH-------IERTVAEVYAAYQQRLTQANALDFDDLIMTTVNLLQAFPDV 268

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVAN----------HPNGAIVLPGLDCHIPTA 269
               +     +++     +  A   L+  +              +G  V  G       A
Sbjct: 269 AEHYRRRFRHVLVDEYQDTNHAQYVLIRELVGRSASSADEPAAGSGEAVYSGGSAEPDGA 328

Query: 270 IWNTITEKSTNITSSNT----TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
            W       +    S        +    Y+         ++ E       V         
Sbjct: 329 GWPAKAVPPSGAVPSAELCVVGDADQSIYAFRGANIRNIVEFEQDFPNAAVILLEQNYRS 388

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
             +                 +    +       +    ADNE +EA  +A  +    DEN
Sbjct: 389 TQTILSAANAVIARNAQRKPKRLWSDAGDG-ERIVGFVADNEHDEAAFVAEEIDRLGDEN 447

Query: 386 ---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                  A+       +R  +    R G+   +  G+          L + L  +    D
Sbjct: 448 LARPADVAVFYRTNAQSRVFEEIFIRVGLPYRVVGGVRFYERREIRDLLAYLRVLVNPTD 507

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            + +  ++  P                          +          +       +   
Sbjct: 508 TVNLRRILNVP--------------------------RRGIGDRAEAMVSAFAERERIAF 541

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
           +        +       A  + D        L+     +        I    + T    +
Sbjct: 542 SEALSRVDEVPGVATRSARSIRD-----FVALLEGLREQLPAGPLAVIEATLERTGYLSE 596

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
            V  D       +    E   +   F++    G        E+++ +  + D + +    
Sbjct: 597 LVAEDTIEAQGRVENLRELVGVVQEFTERRPDG-----TLAEFLEQVALVADADQIPDDD 651

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                + ++    ++ L F  + L GL +GV+P             +  L      +   
Sbjct: 652 GSDGVVTLMTLHSAKGLEFPVVFLTGLEDGVFPHMRTLGDPTGLEEERRLAYVGVTRARA 711

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
           +                 RS          SR+L  +  
Sbjct: 712 RLYLTRSQ---------VRSAWGQPAYNPPSRFLGEVPD 741


>gi|283476681|emb|CAY72510.1| DNA helicase II [Erwinia pyrifoliae DSM 12163]
          Length = 723

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 80/710 (11%), Positives = 173/710 (24%), Gaps = 120/710 (16%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLG 82
           +L   +      +  +P  + +VT    T +A  E+R    ++ G          I +  
Sbjct: 41  VLVHRIAWLMGVENCSPHSIMAVT---FTNKAAAEMRHRIEQLIGTSQGGMW---IGTFH 94

Query: 83  DVVEEKFTADLLLSYNLNPP---VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            +      A  L + NL      + +  +L  L RLI                       
Sbjct: 95  GLAHRLLRAHHLDA-NLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPARQGMWYINGKK 153

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
                              IE+     E                         + + E  
Sbjct: 154 DEGLRLKH-----------IESYGNPIE--------------QTWLR----IYQAYQEAC 184

Query: 200 VELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
                       +                +     I++     +       +  +A    
Sbjct: 185 DRAGLVDFAELLLRAHELWLNKPHILNHYRERFTNILVDEFQDTNNIQYAWIRMLAGDTG 244

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             I++   D       W     ++      +   +                         
Sbjct: 245 KVIIV--GDDDQSIYGWRGAQVENIQRFLQDFPAAE------------------------ 278

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
             +  +       +      +T    N   L  ++         +A+  A NE +EA  +
Sbjct: 279 --TIRLEQNYRSTNNILKAANTLIANNNGRLGKELWTEDSDGEPIAIYCAFNELDEARFV 336

Query: 375 AIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
              +++ +++       A++      +R ++  L +  +   I  G+            +
Sbjct: 337 VNRIKVWMEKGGALNDCAILYRSNAQSRVLEEALLQTSMPYRIYGGMRFFERQEIKDSLA 396

Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            L  I   ND  A   +V  P    G     + R                      + L 
Sbjct: 397 YLRLISNRNDDAAFERVVNTPTRGIGDRTLDVVRQTARE-----------------RQLT 439

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
           L + A                 ++K LA      + +    + +     +    ++    
Sbjct: 440 LWQTARA-------------LLQEKALAGRAASALQRFTELVDSLAHETSDMPLHVQTDR 486

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
             K +   L        +    +   EE    +  +S   E    +   A      +   
Sbjct: 487 VIKDSGLWLMYEQEKGEKGQARIENLEELVNATRQYSYQDEDEDLMPLQAFLSHAALEAG 546

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                          + ++    ++ L F  + + G+ E           F S++   + 
Sbjct: 547 EGQADKWQ-----DAVQLMTMHAAKGLEFMQVFIVGMEE---------GMFPSQMSLEEG 592

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
                E+ +        M   T     TR L    +    SR++  L V 
Sbjct: 593 GRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPVE 642


>gi|71274635|ref|ZP_00650923.1| Exodeoxyribonuclease V, RecC subunit [Xylella fastidiosa Dixon]
 gi|71899653|ref|ZP_00681807.1| Exodeoxyribonuclease V, RecC subunit [Xylella fastidiosa Ann-1]
 gi|170730901|ref|YP_001776334.1| exodeoxyribonuclease V subunit gamma [Xylella fastidiosa M12]
 gi|71164367|gb|EAO14081.1| Exodeoxyribonuclease V, RecC subunit [Xylella fastidiosa Dixon]
 gi|71730605|gb|EAO32682.1| Exodeoxyribonuclease V, RecC subunit [Xylella fastidiosa Ann-1]
 gi|167965694|gb|ACA12704.1| exodeoxyribonuclease V gamma chain [Xylella fastidiosa M12]
          Length = 1121

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 108/900 (12%), Positives = 207/900 (23%), Gaps = 84/900 (9%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
              +L G L E  R       LL   TI +P     + L++      G  + +     + 
Sbjct: 17  ALDVLAGLLAETLRSPVPGQSLLVPDTILIPQAAMRRWLQATLATTHGVVANL--EFLTP 74

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
           G+ V     A+L    N       +   +   RL     +        L           
Sbjct: 75  GEFVARALDANLGAVPN------ALDTAVLHWRLYAALCDPALLTEPALAELHAYLADGD 128

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 LA+ L+   +  +     W  L   +                        R   
Sbjct: 129 LFKPWTLAEALSAAFEKYQAWRCDW--LLRWEAGADPDDPQAILW-----------RHSV 175

Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             A+         +           +G    + I  +    P   R+++T A        
Sbjct: 176 NGATHRARRIHDYLNRYGSGTAPPPQGLPARLFIFATLNISPDVLRVLATQAQVGTLHFY 235

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI---KREDVKRLGN 315
           LP                          T      ++               E V   G 
Sbjct: 236 LPTPTKEYWGDAQPFTQRLHQPTDCVTQTGENRLLHAWGAAGRDFMTVLGSYEVVHPSGE 295

Query: 316 VSNEMYGRSM----------VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
           ++                    S             +  +   +P  +     +      
Sbjct: 296 ITAYDDPEQRPGTTLDEGGLRDSLLQRLHADLFHNRSAPVPAPLPAPRLEDPSLQFHACH 355

Query: 366 NEREEAISIAIALRMSLDE------------NKKKSALITADRNLARRVKLEL-----TR 408
               E   +   LR  L+               ++ A++  D +L       +       
Sbjct: 356 TRLRELQVLHDRLRALLEPNSPEGQRFNPPLQPREIAVLAPDIDLYIPYLEAVFGGHAHS 415

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
             +   ++   PL     + +   LL+          I  L+   L             +
Sbjct: 416 DPLPYTLADASPLIDEPLAEVFLRLLDLPVSRFGLHEILDLLAS-LPMATLAGFDTQTLE 474

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL---SEEDKELAVLLVD 525
                +   G +   D                 N  +          ++ D        D
Sbjct: 475 ILRSWLTAAGARWGLDAAHRAEHQAPADDAYTWNFALDRLLLGHASGADADIAGVAAWSD 534

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--------WF 577
                +T L T                   L     + +       LP++          
Sbjct: 535 LEGSMLTALDTLIRLLRVLANTRQRLSEALLPTQWRERLLSLLDALLPDIPTAPSGIQRP 594

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            E  + L   F+              E + +    +  +T       +  + I   +  R
Sbjct: 595 LERLRRLIDTFATDATRAGVALPVPAEVVRMHFAALLADTDTRAPLLTGGISIGRMVPMR 654

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
           LL F  + L G+N+G +P+             L    +   +    +         F  A
Sbjct: 655 LLPFRVICLLGMNDGDFPRRDPAAGLNRLTAELGNAQRRPGDRSRRDDDCLLLLQLFSAA 714

Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
               ++ Y  +   +      S  L  L  L     +          L     L   +  
Sbjct: 715 QDVFYVSYLGADPHDGSLREPSPLLTEL--LSTAATYHADPSTAAKTLLLRHSLQPFSPT 772

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                  P           + + I+     P   +  R L     P          R   
Sbjct: 773 AFGADGDPRRFSYHPLWQAAAASIEGQ-RHPLDPWCPRRLPALPDPEPALPLHSLRR--F 829

Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
           F     + +++R+    PE+     +        + L      + RH    +  + L HE
Sbjct: 830 FSAPAEQFLQQRLGLRLPELPQTTDEC-------DPLWLPSHGLERHRLDTLIFASLLHE 882


>gi|207743839|ref|YP_002260231.1| uvrd/rep helicase; protein [Ralstonia solanacearum IPO1609]
 gi|206595239|emb|CAQ62166.1| uvrd/rep helicase; protein [Ralstonia solanacearum IPO1609]
          Length = 596

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 57/555 (10%), Positives = 139/555 (25%), Gaps = 50/555 (9%)

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI----VLPGLDCH 265
                +RA  +         I++     +       +  +A      +    +    D  
Sbjct: 3   RYNDAIRAHYQR----RFKHILVDEFQDTNRLQYAWLKILAGLGEPGVAPNAIFAVGDDD 58

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +      +                        L+        + + +N +   + 
Sbjct: 59  QSIYAFRGANVGNMVDFEREFRVE---------HRIKLEQNYRSHGNILDTANHLIAHN- 108

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--D 383
                           T  L   +         V + ++  + +EA  I   +R  +   
Sbjct: 109 ----------------TRRLGKNLRTDAGHGELVRVYQSATDGQEAGWIVDEIRERIVSG 152

Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
             + + A++      +R ++  L   GI   +  G+            + L  +  +++ 
Sbjct: 153 TARSEIAILYRSNAQSRVIEHSLFSVGIPYKVYGGLRFFERAEIKHALAYLQLLENVDND 212

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            A   +V  P    G     L +    L   +L  +           L       ++   
Sbjct: 213 AAFGRVVNFPARGVGARSLELLQDAAKLYGASLAASVPYLTGAAGTKLAAFVRLIEQMRA 272

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                      +    A  L+ H       L   +  +       +              
Sbjct: 273 DTRQMTLPEIVQHVIHASGLITHYQGEKEGLDRIENLQELVTAAQAF---VAEEGYGADA 329

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           +      +   +   E G+T   +  +++   + ++   +        L  G+       
Sbjct: 330 IATALPVRHDAMLRIEGGETDGDVVGELVAGEAPMEMTPLVAFLTHASLEAGD--NQAQA 387

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + ++    ++ L F  + + GL EG++P   +         +  L      +   +
Sbjct: 388 GQDAVQLMTVHAAKGLEFHVVFITGLEEGLFPHENSLQDTDGLEEERRLMYVAITRARER 447

Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
               F           +R L       I SR+   L                        
Sbjct: 448 LYLSFAQ---------SRVLHGQIRYHIRSRFFDELPEATLKWLTPQHAGYSPTRRAQGA 498

Query: 744 KLDYTTKQPHYKRPK 758
           + D    +  +KRP+
Sbjct: 499 QGDSAWGRDWFKRPE 513


>gi|311064185|ref|YP_003970910.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum PRL2010]
 gi|310866504|gb|ADP35873.1| PcrA ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
          Length = 885

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 74/694 (10%), Positives = 167/694 (24%), Gaps = 83/694 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A  E+R     + G  +  +  + +           D   S  L    S
Sbjct: 64  SQILAITFTNKAAAEMRERLEGLIGPVAQRM-WVSTFHSACVRILRRDGQ-SIGLASGFS 121

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            I    +  RL+ +    L   +K   P + LS             +L    + ++    
Sbjct: 122 -IYDTADCERLVKLVGADLNIDLKRYTPRAILSRISDYK------NSLIGWQEQLKRYAP 174

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
            +      +       +        +    +  RL   NA          +         
Sbjct: 175 DY---RPGQRGYQIGNFGDIEVLYSVIYAEYQHRLAMANAVDFDDLIGRTVELLRTQPQV 231

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +  A   L+  +A       V+P            +      
Sbjct: 232 ADYYRHKFRYILVDEYQDTNHAQYELIRELAGVDAAGQVVPDA---------PSAGRAGP 282

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
              +     S    Y+            E                   +           
Sbjct: 283 AWITV-VGDSDQSIYAFRGADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAANAVIAN 341

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396
                 +     +      +    ADN  +EA  IA  +     E        A++    
Sbjct: 342 NQGRKPKKLWTALGSGDP-IVGYAADNAEQEAAWIAGEIARVRAEEGTPYSDMAIMYRAN 400

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  L   G+   +  G             + L AI    D + +  ++  P   
Sbjct: 401 AQSRALEGALVHAGLPYQLVGGTRFYERREVKDAIAYLQAIVNPADNVNMRRILNVP--- 457

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                    RA++ +   A       +D ++    +                  R     
Sbjct: 458 ---KRGLGPRAESIIVSYADAHATTFWDGIEHLDQIDGVPTRTGKQLAAFRDLMRSLSAF 514

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                                          LS S   +                L  L 
Sbjct: 515 AAE----------------HDGKPSEVVGEVLSQSGLLEELQRSEDPQDASRVENLSQLQ 558

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                   ++             A    +++    + D + +  + E S  + ++    +
Sbjct: 559 SVAAEFEQNTP-----------DATLAGFLETTALVADSDQLPSEGEDSGKVTLMTLHTA 607

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L +  + L G+ +G +P + A              ++ A++   +    +      + 
Sbjct: 608 KGLEYPVVFLTGMEQGTFPHSRA--------------MEDADELSEERRLAYVGITRAKR 653

Query: 697 LIY-----TRSLRENNIPTIASRWLQRLLVLGGT 725
            +Y      R+        + S++L  +      
Sbjct: 654 RLYVTRAAVRAQWGQANEMMPSQFLDEIPDRLID 687


>gi|312199973|ref|YP_004020034.1| ATP-dependent DNA helicase PcrA [Frankia sp. EuI1c]
 gi|311231309|gb|ADP84164.1| ATP-dependent DNA helicase PcrA [Frankia sp. EuI1c]
          Length = 834

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 75/689 (10%), Positives = 167/689 (24%), Gaps = 88/689 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             +     T +A  E+R     + G   ++     + +           +          
Sbjct: 109 GEILAITFTNKAANEMRERVGALVGGRVRAMW---VSTFHSACVRILRNESK-------- 157

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                      RL       + D        + +   +   +    A+ LA  I  ++ E
Sbjct: 158 -----------RLGFGSSFSIYDAADAQRLITLVCRDLDLDSKRHPARGLAAQISTLKNE 206

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               E        K           +      +  RL E NA       +  +       
Sbjct: 207 LVDHET----AQAKASSHPERT---VAEVYALYQRRLREANALDFDDLIMTTVNLLQAFP 259

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                       +++     +  A   L+  +           G       A        
Sbjct: 260 DVAEHYHRRFRHVLVDEYQDTNHAQYVLIRELVGGGGS---TAGRAPGRLLAAGPADPGL 316

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                      +    Y+         ++ E+                  +         
Sbjct: 317 PGPAELCVVGDADQSIYAFRGADIRNIVEFEEDFPSAKTVLLEQNYRSTQTILSAANAVI 376

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITA 394
                   +    +       V  + ADNE +EA  +A     L           A+   
Sbjct: 377 ARNTQRKPKRLWSDAGDGEKIVGFV-ADNEHDEAAFVAEEVDRLSDEKLARYADVAVFYR 435

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R  +    R G+   +  G+          L + L  +   +D + +  ++  P 
Sbjct: 436 TNAQSRVFEEIFIRVGLPYKVVGGVRFYERKEIRDLLAYLRVLANPSDTVNLRRILNTPR 495

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G   + +  A    E +                       T      VP   +R ++
Sbjct: 496 RGIGDRAEAMLAAFAERERIGF-------------------ADTLSRVDDVPGLATRSAK 536

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             +E A LL +         V             +I    + T    + V  D       
Sbjct: 537 AIREFATLLAELRETAEGDPVE------------TIEAVLERTGYLSELVAEDTIESQGR 584

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +   +E   +   +++    G         +++ ++ + D + +         + ++   
Sbjct: 585 VENLQELVEVVREYTERFPDG-----TLAGFLEQVSLVADADQIPSDDGSDGVVTLMTLH 639

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L GL +G++P        +    +  L      +   +           
Sbjct: 640 SAKGLEFPVVFLTGLEDGIFPHMRTLGDPIQMEEERRLAYVGVTR--ARQRLYLTR---- 693

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLG 723
                 RS          SR++  +    
Sbjct: 694 ---SVVRSAWGQPAYNPPSRFVTEIPEHL 719


>gi|254452740|ref|ZP_05066177.1| exodeoxyribonuclease V, beta subunit [Octadecabacter antarcticus 238]
 gi|198267146|gb|EDY91416.1| exodeoxyribonuclease V, beta subunit [Octadecabacter antarcticus 238]
          Length = 1051

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 85/802 (10%), Positives = 196/802 (24%), Gaps = 80/802 (9%)

Query: 175  EKYGMWWLLAADFLKIASKYWTERLVELNASSPV-----GYQIALMRAEAEHLMKGTKGP 229
            E             +     + +   E              ++   R E    +      
Sbjct: 286  EDACAHLTALVHGAQEVMSKYADMKREAGVIDYADMICDAERLLRTRPEILEALLSEVDC 345

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            +II     + P    L+  +A       VL   D       +     + +         +
Sbjct: 346  VIIDEFQDTNPVQFALLWRIAQSAKR--VLIVGDTKQSIMGFQGADPRLSEALERQNPEA 403

Query: 290  THPQYSLAKLLDFLDIKREDVKRLG--NVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
              P     +    L      +           +  +     ++F                
Sbjct: 404  ASPLTGNWRSDPRLMQMVNTISAGLFKEAYVPLEPQRPETGQTFSEILRIPEGRRSKKSR 463

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELT 407
               ++    +D+          E+   A   R       +  A++    ++A R    L 
Sbjct: 464  PEEHVSARIADILAEAGPVVERESDPKAPTFRPV---EPRDIAILAPTHSMAARYATALK 520

Query: 408  RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
            R G+ + ISA   L  +       + L       D  A   L+          +     A
Sbjct: 521  RHGVPVRISAAGWL-DSPAIMAARNALAFAVDPTDLHAALALLTLGPFAVPLQQAMSLLA 579

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
               LE      +  S         +   +      + +  W + LS E  +    L+   
Sbjct: 580  DGELENCPQLADLRSLAGTAPSMPLETLLPQVLRASGILDWAA-LSPEATQAHADLMRLH 638

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
             +    +  ++  K +   + + +      +   ++    +    P     +  + ++  
Sbjct: 639  AEVSEFVSAHRDFKAAAGFHGASAQVFLGWLEARRDERDFDRHPDPGQSEGQGVEIVTWH 698

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
             SK  E           W   +   +D    +      +       L + L +   +   
Sbjct: 699  ASKGRE-----------WPITVVVGLDKAIGEKPGTLRAEFTDFSDLGAILEHARLIWTP 747

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT----RSL 703
             L+     +   ++   +    +                 +      R  +       +L
Sbjct: 748  DLSIKEKKEIFIEDRRPAAEADAR-------------RLLYVALTRGRDRLIFEWPDFAL 794

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFD-NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
            ++       +   + L++  G +    +LK  G  +                  P     
Sbjct: 795  KKLGEGDGPANHAEMLVLEAGMEPQAGSLKVGGASFPARMLACIAAVPDMPDLSPAHASG 854

Query: 763  LEAQPRTYSF---SEIKQLINDPYAVYARRILKLD--------FIPHFKKDPDRTDRGTL 811
              A          +        P  + +     +                    ++RGT 
Sbjct: 855  ARAAFGELRALQETRPTVWRTRPSQLGSELGPAVKTEVVTLDIQHQVASLAATASERGTA 914

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
             H  +  L+              ++  + S   +        +          + +L  E
Sbjct: 915  LHKALRVLL--------------LRPDLRSRLVEATGFDEATLGVLAEQAAALNRWLTAE 960

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
                    +I   +P +   E+ G+ + G  D +    +G   I D+K+G          
Sbjct: 961  -----GYTEIECEVPIQKR-EASGVEVNGIIDLL-ATGAGKQLILDHKSGAGT-----FA 1008

Query: 932  LIDPQLSLEAAALKAGSFSQID 953
                QL      L   S   + 
Sbjct: 1009 DYAAQLDAYGKLLAQQSDGDLP 1030


>gi|326317369|ref|YP_004235041.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374205|gb|ADX46474.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1182

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 69/786 (8%), Positives = 183/786 (23%), Gaps = 72/786 (9%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPII 231
                 A   +     +     +         +   +            +  +      ++
Sbjct: 344  HQQRMARLTRALVAAFGALKRDRGWVDMNDVERTALVMLSDPVLSGWVQERLDARVRHLL 403

Query: 232  IAGSTGSIPATARLMSTVANHPNGA-------IVLPGLDCHIPTAIWNTITE-------- 276
            I     + P   + +        G         V    D       +             
Sbjct: 404  IDEFQDTNPLQWQALHAWLASYVGTGGGQHPPSVFIVGDPKQSIYRFRRAEPQVFRAAQA 463

Query: 277  KSTNITSSNTTYSTHPQY----SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
                    +     H +      +A +   +   +      G   +    R         
Sbjct: 464  FVRQGMGGDLLACDHTRRNAPEVIAAVNAVMGAAQAQGDYAGFRDHTTESRDAGGLLRLP 523

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE----------AISIAIALRMSL 382
            P + +   + +          +     +L++  +E EE          A  +A  +  + 
Sbjct: 524  PIEDAADDDENEAGGPDARPDRLAWRDSLVQPRHEAEETLRMRECQQAARWVAGQI--AA 581

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                ++  ++   R+    ++  L    +       + L        + +LL+ +     
Sbjct: 582  GVPARQIMVLARKRDRLSALQDALRDLHLPCVQPEKVELCEAPEVQDVVALLDVLVSPGH 641

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             +++A  ++ PL                              +     L+ DR       
Sbjct: 642  DLSLARALRSPLFGMDDALLVRVAVARRDAERGAARGLQEGGVPGWLELLADRALLDAEM 701

Query: 503  THVPHWQS-RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
              + H         ++      +D I +    L  Y     +   +  +++   L    L
Sbjct: 702  PGLSHDLRLYRHWVEQWPPHDALDAIYRHRDVLARYAAASPAPLRSGVLANLRALLSAAL 761

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            Q            +   +     +       +    +  +  + ++    L+     + +
Sbjct: 762  QQDGGRYLTPYAFVRALKRPGQRAPGRVD-ADAVRLLTIHGAKGLEADAVLLLDTDGRAQ 820

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
              ++  + +    E   L      +   +E   P + A      +  +    + T     
Sbjct: 821  KAETMGVLVDWPGE---LPAPRRFVFLASEASPPPSAADALAAEQAERQREEINT----- 872

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                  +      RH +    +R     +    W  R+  L             Q     
Sbjct: 873  -----LYVAMTRARHCLALSCVR--ASQSAPGSWWNRVAPLAA--------DVPQDLSGP 917

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                +   +     +    P  +  P                   A   +          
Sbjct: 918  AGGAEDGLRAVVDAQLPELPGWQDAPPLPMGPPPGAEAEAGAQAEAGAAVAGLPRERRAP 977

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
                + +G   H ++ +       +     +        +   +      +         
Sbjct: 978  STPASRQGEAMHQLLEQAGLAGRLRGGAAGSSA--GWPRARLLQLARDFELPPELAERAA 1035

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL---KSGFVDITDY 918
             ++   L+ E     +   I + +  +  I   G  L    DR+        G   + DY
Sbjct: 1036 VMAARILQGEGAWAWNSADIELAMD-EAPIVHRGQTL--RIDRLVRRSTGGRGEWWVLDY 1092

Query: 919  KTGDNP 924
            K+  NP
Sbjct: 1093 KSAANP 1098


>gi|87123150|ref|ZP_01079001.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. RS9917]
 gi|86168870|gb|EAQ70126.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. RS9917]
          Length = 796

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 81/790 (10%), Positives = 201/790 (25%), Gaps = 118/790 (14%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF----IEITGKKSTILPIIKSL 81
           L   +         +P   A +     T +A +E++        +   +     P   +L
Sbjct: 36  LTHRIAHLIGEHGADP---AQILAVTFTNKAAREMKERLELLLAQRLAQSQFGQP-WSTL 91

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             V + +  + +      +  +     L   AR++    +K  D     + +       +
Sbjct: 92  PPVEQRQLRSRIYREVTKDLWIGTFHALF--ARMLRFDIDKFKDAEGLSWTKQFSIYDET 149

Query: 142 PANAIW---LAKNL------------ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
            A ++    + + L               I   + +    +DL A    +          
Sbjct: 150 DAQSLVKEIVTQELQLDPKRFDPKKTRWAISNAKNQGWLPDDLEANAEGQR-------GK 202

Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPA 241
                 + + + L   NA       +  ++   ++             +++     +   
Sbjct: 203 LTADVYRRYRKALAANNALDFDDLLLLPVQLLQQNEQVRAYWHRRFRHVLVDEYQDTNRT 262

Query: 242 TARLMS---------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
              L+           V ++ +G  V    D       +             +       
Sbjct: 263 QYELIKLLVTDGKDPQVYDNWSGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD---- 318

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
                          +          ++       +      +     N++ ++  +   
Sbjct: 319 ---------------KAPDDSTRTMVKLEENYRSTATILEAANALIAHNSERIDKVLRPT 363

Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTR 408
           +     ++L   D+E  EA ++   LRM    N +      A++      +R ++  L R
Sbjct: 364 RGEGELISLTRCDDEIAEAEAVVHRLRMMEAANPELGWGDMAVLYRTNAQSRAIEESLVR 423

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
           + I   +  G+          L + L  +    D +++  ++  P               
Sbjct: 424 WRIPYVVVGGLRFYDRREIKDLLAYLRLLVNPADTVSLLRVINVP--------------- 468

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                   R       I  L            +    P     L     +  +   + I 
Sbjct: 469 --------RRGIGKTTIQRLTDAANQLGIPLWDVVSDPEAVRSLGGRSAKGLLQFCELIG 520

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                +     ++            ++L           E R+                 
Sbjct: 521 GLKERIHDAAPSELIQTVMEQSGYVSEL---IADATDEAEERRRNLQELVNAALQYQEEN 577

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            +    G             +           K   +  + ++    S+ L F  + L G
Sbjct: 578 DEGDLEG------------FLASAALASDADSKDTAADRVTLMTLHSSKGLEFPVVCLVG 625

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
           L +G++P   + +   S   +  L      +   +        +          +RE   
Sbjct: 626 LEQGLFPSYRSLDDPASLEEERRLCYVGITRAKERLF-----LSHASERRLWGGMREA-- 678

Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
             + S +L  L          ++ + G   L   ++L+  T+       +  P    + R
Sbjct: 679 -AVPSVFLSELPEAL---VQGDVPRSGGAALRREQRLERLTRVDRDDARRAAPANAVRRR 734

Query: 769 TYSFSEIKQL 778
               +  K  
Sbjct: 735 QAGPAPGKSW 744


>gi|312898123|ref|ZP_07757515.1| ATP-dependent nuclease subunit A [Megasphaera micronuciformis F0359]
 gi|310620791|gb|EFQ04359.1| ATP-dependent nuclease subunit A [Megasphaera micronuciformis F0359]
          Length = 1220

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 79/878 (8%), Positives = 199/878 (22%), Gaps = 140/878 (15%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQI--------------ALMRAEAEHLMKGTKG 228
              +  ++   K +     E N       +                ++ + A   M+ T  
Sbjct: 347  ALSGLIRDFYKAYNAAKREKNWLDFGDLEHYCLQILTVHDEQTGEVLPSAAAKEMRSTFK 406

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
             I+I     +      + + V++   G       D       +                 
Sbjct: 407  EILIDEYQDTNGVQELITTLVSD---GTNRFMVGDIKQSIYRFRLADPTLFLEKYMTFER 463

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                      L          ++ + ++ +     +               R  D     
Sbjct: 464  RAEAVNRCIVLSMTFRSAPAVIEAVNDIFSYAMTEAATGMDYGDNEKLYVGRTDDEPGVA 523

Query: 349  IPNIQKCFSDVALIEADNER---------------EEAISIAIAL-----RMSLDENKKK 388
              +I    +    +E D                   +   +A  +          + K  
Sbjct: 524  ELHILDEVTTYESLETDGGEESDDDDDSAEESSFIRQCRFVAARIGELKAADPSLKYKDI 583

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
              L+ +    A  +   L   GI                 ++T+LL  I      + +A 
Sbjct: 584  VVLLRSVSRKAEDLLTVLQDAGIPAYAEQKGGYFNVTEVRLMTALLACIDNPCRDIELAA 643

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            +++ P+                 E+   R       +    + + D +  ++ +  +   
Sbjct: 644  VLRSPIVGINEATLA--------EIRMYRDGYLVDALEAYTAGLHDGVYKERLSEFLFRL 695

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
             +  +   +     L+  I +  + +      KN      ++    +      +      
Sbjct: 696  DAWRTYSRRAGVAELLRRIYEKTSYIDYVAAMKNGDLRRANLEALYERAGQYERAGFRGL 755

Query: 569  HRKLPNLWF---EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET-VKPKIEK 624
             R L  +     +      + +  +  +    +  +  + ++     +        K ++
Sbjct: 756  FRFLKFIERMKKKGLDLAPARVVGEEEDVVRIMTIHKSKGLEFPVVFLVNTEKTFNKQDE 815

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
               +     L   +  FD           +     +  +              E    + 
Sbjct: 816  QEPVLYHKELGIGIRAFDAKWRMTWPTLAYNGIKERTVW--------------ENRAEEE 861

Query: 685  AHDFEMANGTRHLIYT-------RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
               +      ++ +          S   + +    +R+   +    GT + D +      
Sbjct: 862  RLLYVAMTRAKNRLILVGTVKSRGSKNTDCLYDRLARFRNDVHAEAGTSYLDWILPPLLR 921

Query: 738  YLD------------------------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
             L                          T  +D         RP+       +    + +
Sbjct: 922  KLPDVTDLTASDENSEFVHAGVWQVTVHTEPVDAGKAMADVLRPEEAHLEAVRADMPTGT 981

Query: 774  EIKQLIN------DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             I   ++       P+      + KL      ++  + T+   L             +  
Sbjct: 982  AIPAWLDEALSFTYPFEAATHTVAKLSVSEIKRRLAEATEEEDLLQEGEHLFSTGVEDDE 1041

Query: 828  TPEINH----------------------LMKQIID-------SHFEKENLPPHIDIIWRH 858
            T                            +    D          E              
Sbjct: 1042 TDLTRPPWLCEKASQSPTFAGTVFHKAVQLLDFADLTKENIVEQVEGWKNSGRFTSEELS 1101

Query: 859  LFH-KISHSFLEHEEKIQSSIEK-IFVNIPAKM--------AIESIGIHLTGFADRIDLL 908
                   + F E     +      +                 +E   I + G  D + + 
Sbjct: 1102 RLRMNDLYHFAESHLAARIQASPDVRREYGFTFLADSDKVSRVEGERILVQGVVDCLFVE 1161

Query: 909  KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
                  I DYKT      +  +K    QL+L   A++ 
Sbjct: 1162 GD-EWIIVDYKTDRLNTADEFKKRYAVQLNLYKLAVEQ 1198


>gi|83592871|ref|YP_426623.1| ATP-dependent DNA helicase Rep [Rhodospirillum rubrum ATCC 11170]
 gi|83575785|gb|ABC22336.1| ATP-dependent DNA helicase, Rep family [Rhodospirillum rubrum ATCC
           11170]
          Length = 768

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 78/692 (11%), Positives = 184/692 (26%), Gaps = 116/692 (16%)

Query: 41  PLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN 100
           P+    V     T RA +E+R          + I P       + E+ +           
Sbjct: 69  PVRPWQVLAVTFTNRAAREMRER------AGAMIGP-------MAEQVWLGTFHALG--- 112

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V  ++R  +L  L   +     D    L  +   +  I        A     +I   +
Sbjct: 113 --VRMLRRHGDLVGLRSGFTILDADDQLRLLKQILEAEGIDTKKWTPQAGM--GLIQRWK 168

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
            +    E + A            A        K + +RL  +NA+      +  +    +
Sbjct: 169 DKGLLPEAVPA-----GDGGREYAGGRAVDLYKQYQQRLAVVNAADFGDLLLHCLTIFTK 223

Query: 221 HLMKGT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
           H             I++     +  A    +  +A        +   D       W    
Sbjct: 224 HPDVLADYSKMFHYILVDEYQDTNVAQYLWLRLLARGHGNICCV--GDDDQSIYSWRGAE 281

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
             +     ++      P  ++ +L          +     +     GR            
Sbjct: 282 VGNILRFEADF-----PGATVVRLERNYRSTPTILAAASGLIRHNKGR------------ 324

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALIT 393
                     + +     +    V +    +  EEA  +   +  R    +     A++ 
Sbjct: 325 -------LGKDLRAGEGDEAGDAVIVRGLWDGEEEARRVVDDIETRQRAGDRLNGMAVLV 377

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                 R  +  L   G+   +  G             + L  + + +D +A   ++  P
Sbjct: 378 RAGFQTRAFEERLILAGVPYRVVGGARFYERQEIRDAIAYLRLVAQPDDSLAFERIINLP 437

Query: 454 LAKFGFPEKYLS-RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
               G        RA     +  +R  + + +  +L+      +    ++          
Sbjct: 438 RRGLGDASLQTLMRASRMASISLMRAAREAIETDELRPQARKALRAFLDD---------- 487

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
                                               S++D       C   +    + ++
Sbjct: 488 -------------------------------MGRWRSLADAMAPDELCGTVLDESGYLEM 516

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
                  + +       +++      + +   +++ ++ ++D E           + ++ 
Sbjct: 517 WRKDKSPDAQGRVENLKELVSALKEFE-SLGAFLEHVSLVMDNEA----RATEDAVTLMT 571

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L FDT+ L G  E ++P   A +         +   +  E+    A      A 
Sbjct: 572 LHAAKGLEFDTVFLPGWEEEIFPHRRALD---------ENGAEALEEERRLAYVGLTRAR 622

Query: 693 GTRHLIYTRSLRENNI--PTIASRWLQRLLVL 722
               + +  + R  N     + SR++  L   
Sbjct: 623 KRAIISFVANRRVYNEWRACLPSRFIDELPPE 654


>gi|88811691|ref|ZP_01126945.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus
            mobilis Nb-231]
 gi|88791082|gb|EAR22195.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus
            mobilis Nb-231]
          Length = 1117

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 81/818 (9%), Positives = 197/818 (24%), Gaps = 63/818 (7%)

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
             +        L              +   L    + +      L+    +    AL+R  
Sbjct: 314  YQVVGAACTALQGAVAIGAFEQLAESLRPLLERYQDYKRAAALLDFDDLLATACALLRDP 373

Query: 219  A----EHLMKGTKGPIIIAGSTGSIPATARLMSTV-----------ANHPNGAIVLPGLD 263
            A       +      I++     + P    ++  +                   +    D
Sbjct: 374  ANEPVRRALSARYRYILVDEFQDTDPLQVEILWRLCGEGTHDTPWQERVLRSGALFCVGD 433

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +      +          +  P+  L    +F   +          +  +   
Sbjct: 434  PKQAIYRFRGADVATYVAARERLKAAD-PECILEVTANFRSYRPILEWVNERFAAPLTAV 492

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----- 378
                 +   P  T       ++   +P              + E +    +   L     
Sbjct: 493  GQPGFQPLAPTRTPPDDAPRVVRLTVPVAAADDKPRPSECREAEAQRVAELCQRLIGGYP 552

Query: 379  ----RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                R           L+        R +  L   G+ +   AG           L ++ 
Sbjct: 553  IHTGRRPRPCRPGDIVLLAPSGTELWRYERALEDRGVAVASQAGKGFFRRQEIQDLIAIT 612

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
              +    D +A+  L++ PL      E+ L    + L             +    + V D
Sbjct: 613  RVLADARDTVALGALLRGPLVG--LTEEALLDIVDQLPPPEDCAGSARLTLWTEPAYVAD 670

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
             +A              L      L    V  +   + PL+ ++ +  +     ++  + 
Sbjct: 671  TLARTTLEILQALAARALDTTPFALLGQAVAELH--VRPLLIHRHSGGAERALANVELFL 728

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            +++              +   W E+   +              I  ++ + ++    +  
Sbjct: 729  EMSKPYAARGLFAFAADMRTRW-EDAEASTEGRPDAQEHAVHLITMHSAKGLEWPIVIPV 787

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                + +                 L                       F +    + L+ 
Sbjct: 788  NTVSEGRAAGGPLFDRSDQRIHYCLGA---------------------FRAERYVTALDE 826

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            + AE+   Q    +        L+      E          L  L +       D     
Sbjct: 827  EKAEQRREQVRLLYVAFTRAEQLLVLPQPLEAESG---WFGLLDLRLDQLPTLDDGGWGS 883

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                    + ++   +       +              SE +     P       +    
Sbjct: 884  SLPERIPAQIINGQDRVRFQHEAQRIQAARRALVWRRPSEHEPAGAAPSMAEESSVFAEP 943

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                         RGT+ H ++ E++ + +++    +     +++          P I  
Sbjct: 944  AADAMSPAEGGALRGTVLHKLMEEVLTEEVDEAAQVLQTRAAELLAQLAPAPVEAPPI-S 1002

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-----KMAIESIGIHLTGFADRIDLLK 909
                   ++    L     + +   ++   +P                ++G AD + L  
Sbjct: 1003 DSPAELAEVVRRTLALPV-VVALRTRLLAEVPIYDCYKVAEAPRAETLISGVADALALGV 1061

Query: 910  SGFV-DITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             G V  + D+K+   P +   ++L   Q+     A +A
Sbjct: 1062 DGTVEAVIDWKSDIAPSER-VRRLYREQVRAYLVATQA 1098


>gi|188993815|ref|YP_001905825.1| exodeoxyribonuclease V gamma chain [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167735575|emb|CAP53793.1| exodeoxyribonuclease V gamma chain [Xanthomonas campestris pv.
           campestris]
          Length = 1134

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 107/945 (11%), Positives = 230/945 (24%), Gaps = 117/945 (12%)

Query: 32  ENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTA 91
           E  R       +L    + +P     + L+S      G  + +     + G+ V      
Sbjct: 26  EELRRPVPEQPVLQPEVVLIPQVAMRRWLQSTLAAEHGVAANL--EFLTPGEFVARALER 83

Query: 92  DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
           +L  + +     +   RL                    L P +             LA  
Sbjct: 84  NLGPADDDLDMATTQWRL-------YQTLQGELGSDAALAPLAGYLADGDALKPWALAGE 136

Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
           L  + +  +   + W            + W   AD     ++ W                
Sbjct: 137 LGSVFEKYQAWRRDW-----------LLRWESGADADDPQARLWRSI--AGGRQYRARRI 183

Query: 212 IALMRAEAEHLMKGT---KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +   A             +         P   R+++T A        LP        
Sbjct: 184 GQYLDRYARPDGPLPQGLPKRLFAFAILNVSPDVLRVLATQARVGTLHFYLPTPTQGYWG 243

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
            +      +      +        Q     LL        D   L      ++  + + +
Sbjct: 244 DLQTLWQRRREGGAVALFAE----QVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEIAA 299

Query: 329 KSFLPPDTSD--------------------MRNTDILENKIPNIQKCFSDVALIEADNER 368
            +                             R+   +   +P +      + +       
Sbjct: 300 YADPLDAGRRTLAEGGLGDSLLRRMQSDLFHRHAPAVPPVLPAVNLHDPSLQVHACHTRL 359

Query: 369 EEAISIAIALRMSLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDIS 416
            E   +   LR  LD+         ++ A+++ D +        +     +  G+   ++
Sbjct: 360 RELQVLHDQLRALLDDARFDPPLQPREIAVLSPDIDPYVPYLDAVFGGHGSDDGLPYALA 419

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG--FPEKYLSRAKNALELV 474
              PL++   + +  +LL           I  L+            E  L R +  L   
Sbjct: 420 DASPLASEPLADVFLTLLGLPISRFGLHEILDLLASAPIAEAAGLDEAGLERLRGWLHGA 479

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
             R   ++      ++   D    +     +    +  +E+D +            +  L
Sbjct: 480 GARWGLDAVHRRQHQAPGDDAYTWRFALDRLLLGHASGAEDDIDGVAPWPQLEGSALAAL 539

Query: 535 VTYKTNKNSTCGNLSI-------SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            T          + +          W +  +  L+ +              E  +TL   
Sbjct: 540 DTLLRLLRVLDRHQAALAEAMTPVQWRECLLGLLEALIPKAPSAPRAQRALERLRTLIDQ 599

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
           F++             E +      + GE+       +  +     +  RLL F  + L 
Sbjct: 600 FARDAVRAEYAGNVPAEVVRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRAICLL 659

Query: 648 GLNEGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
           G+N+G +P+             L    +   +  T E         F  A    +L Y  
Sbjct: 660 GMNDGDFPRRDPAAGLNRLTAELGTERRRHGDRSTREDDRFLFLQLFASAQEVFYLSYLG 719

Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT------------------- 742
           +   +      S  +  LL        D                                
Sbjct: 720 ADARDGTVREPSVLVSELLGSAAQYHADPGAIDALVVRHPLQPFAAAAFGAVGEDGADPR 779

Query: 743 ----RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI---------KQLINDPYAVYARR 789
               R+           + +P  P  A       S +         ++L  DP   + R 
Sbjct: 780 RFSYRRQWRPAVDSLAGQRQPLAPWVAGALPVDPSALPASVSIDDLRRLFADPAGQFLRH 839

Query: 790 ILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
            L +       +D D        RG   + +  ++    +  +   +   ++        
Sbjct: 840 RLGMRLPDPAGEDSDLEPLLAPTRGLEQYGLQQQVFDAALAGDADGLYERLRA---RALL 896

Query: 845 KENLPPHIDIIWRHLFHK-ISHSFLEHEEKIQSSIEKIFVNIPAK 888
                    +  R    +  +  F +      +   ++ V I   
Sbjct: 897 PSGPLGRRQLDERLRQLRPYADVFRQWRGDEPAQSHRLQVEIDGT 941


>gi|282164943|ref|YP_003357328.1| hypothetical protein MCP_2273 [Methanocella paludicola SANAE]
 gi|282157257|dbj|BAI62345.1| hypothetical protein [Methanocella paludicola SANAE]
          Length = 404

 Score = 81.1 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 16/187 (8%)

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
             TYS S +    N P       + ++  +    +  +    G   H  + +L   R+  
Sbjct: 1   MPTYSHSRLSAYENCPLKYRFAYVDRVK-LERMPESIEAF-MGKRVHETLEKLYSDRML- 57

Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF-----HKISHSFLEHEEKIQSSI--- 878
           +  +    +    D  + K         I R        H+     +    +  +     
Sbjct: 58  SKEDTMDELLDFYDGVWGKN--WSDDVQIVRKDLTVENYHETGRRCVADYYRRYAPFDQG 115

Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
             + +  P  + I+  G  L G+ DR+DL   G  +I DYKT  +  ++      D QL+
Sbjct: 116 RTLKLEAPVYINID--GYRLMGYIDRLDLTGDGRYEIHDYKTSRSLPEQQYFDG-DRQLA 172

Query: 939 LEAAALK 945
           L    ++
Sbjct: 173 LYQIGVR 179


>gi|259906888|ref|YP_002647244.1| DNA-dependent helicase II [Erwinia pyrifoliae Ep1/96]
 gi|224962510|emb|CAX53965.1| DNA helicase II [Erwinia pyrifoliae Ep1/96]
          Length = 720

 Score = 81.1 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 80/710 (11%), Positives = 172/710 (24%), Gaps = 120/710 (16%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLG 82
           +L   +      +  +P  + +VT    T +A  E+R    ++ G          I +  
Sbjct: 38  VLVHRIAWLMGVENCSPHSIMAVT---FTNKAAAEMRHRIEQLIGTSQGGMW---IGTFH 91

Query: 83  DVVEEKFTADLLLSYNLNPP---VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            +      A   L  NL      + +  +L  L RLI                       
Sbjct: 92  GLAHRLLRAH-HLDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPARQGMWYINGKK 150

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
                              IE+     E                         + + E  
Sbjct: 151 DEGLRLKH-----------IESYGNPIE--------------QTWLR----IYQAYQEAC 181

Query: 200 VELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
                       +                +     I++     +       +  +A    
Sbjct: 182 DRAGLVDFAELLLRAHELWLNKPHILNHYRERFTNILVDEFQDTNNIQYAWIRMLAGDTG 241

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             I++   D       W     ++      +   +                         
Sbjct: 242 KVIIV--GDDDQSIYGWRGAQVENIQRFLQDFPAAE------------------------ 275

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
             +  +       +      +T    N   L  ++         +A+  A NE +EA  +
Sbjct: 276 --TIRLEQNYRSTNNILKAANTLIANNNGRLGKELWTEDSDGEPIAIYCAFNELDEARFV 333

Query: 375 AIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
              +++ +++       A++      +R ++  L +  +   I  G+            +
Sbjct: 334 VNRIKVWMEKGGALNDCAILYRSNAQSRVLEEALLQTSMPYRIYGGMRFFERQEIKDSLA 393

Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            L  I   ND  A   +V  P    G     + R                      + L 
Sbjct: 394 YLRLISNRNDDAAFERVVNTPTRGIGDRTLDVVRQTARE-----------------RQLT 436

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
           L + A                 ++K LA      + +    + +     +    ++    
Sbjct: 437 LWQTARA-------------LLQEKALAGRAASALQRFTELVDSLAHETSDMPLHVQTDR 483

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
             K +   L        +    +   EE    +  +S   E    +   A      +   
Sbjct: 484 VIKDSGLWLMYEQEKGEKGQARIENLEELVNATRQYSYQDEDEDLMPLQAFLSHAALEAG 543

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                          + ++    ++ L F  + + G+ E           F S++   + 
Sbjct: 544 EGQADKWQ-----DAVQLMTMHAAKGLEFMQVFIVGMEE---------GMFPSQMSLEEG 589

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
                E+ +        M   T     TR L    +    SR++  L V 
Sbjct: 590 GRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPVE 639


>gi|17545909|ref|NP_519311.1| hypothetical protein RSc1190 [Ralstonia solanacearum GMI1000]
 gi|17428204|emb|CAD14892.1| probable homologous recombinational repair protein, atp-dependent
            exodnase (exonuclease v) beta subunit (contains helicase
            and exonuclease domains) [Ralstonia solanacearum GMI1000]
          Length = 1177

 Score = 81.1 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 86/805 (10%), Positives = 191/805 (23%), Gaps = 75/805 (9%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGS 238
              D L    + +  +   ++ +        LMR     A  +  +      +++     +
Sbjct: 364  LGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQVRLDARYKHLLLDEFQDT 423

Query: 239  IPATARLMSTVANHPNGA----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS----- 289
             P   R++        G      V    D       +     +           +     
Sbjct: 424  NPMQWRILQGWLRGYEGTGTRPTVFLVGDPKQSIYRFRRADARLFEAARDMLVAAFDATV 483

Query: 290  ---THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                  + +   +L++++      +  G+        + V +          +   +  +
Sbjct: 484  LRTNRTRRNAPAVLEWVNAVFLLARARGDYPIYAEQSTAVDAPVGRALLLPLVPVPEAAQ 543

Query: 347  NKIPNIQKCFSDVALIEADNER-EEAISIAIALRMSLDENK------------KKSALIT 393
                  +   ++      D++R +E   +A  LR      +                L+ 
Sbjct: 544  ADETAPRDSLTEPREEAGDSQRYDEGRQVAACLRALHAGERVRENGAERPVRWSDFQLLV 603

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              +      +  L   G+         L  TL +  L +LL+ +      + +A +++ P
Sbjct: 604  RRKRYLADYERALRDAGVPYLSPRRGGLLATLEALDLCALLDFLMTPQADLPLAHVLRSP 663

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            +      +             A  G         L +L     A  +           L+
Sbjct: 664  IFAVTDDDLIALA-------QAGEGASAPTWWERLAALADRPHAAAQWRRAHRLLSRWLA 716

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                     L+DHI+        Y           ++++        L         + P
Sbjct: 717  VAPTLPVHDLLDHIVYTGELKRRYAERVPEANREQALANLDAFLKLALDLDG----GRYP 772

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +L              +       ++ +A E  D I   +  E           + IL  
Sbjct: 773  SLPKFMAELRAIRQGDEEESPDEGVQGDAAEAPDAIDAELASE-------GLDAVQILTV 825

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAK---NPFLSRVMQSDLNLKTAEKYIGQAAHDF-- 688
              S+ L    ++L   +      +T     +        +  +        G+A      
Sbjct: 826  HASKGLEAPFVVLLDSHHSDTRADTVGILIDWPPGAEAPAHFSAFGKAAERGRARDPLFA 885

Query: 689  --EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                     +              +    +            D               L 
Sbjct: 886  QEATLAERENWNLLYVAMTRARQALIVSGVANKRDGAAAQAVDEGDVPDVDGSASWYTLL 945

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR------RILKLDFIPHFK 800
             T         +            S +        P  V  R      R+          
Sbjct: 946  ATAGAATPAPVEAAAGAGGADHAASQAVAYHDFRVPLTVTVRIGGAVERVADAPDTADAI 1005

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
             D     +G L H ++  L +    +  P+        I   F    +            
Sbjct: 1006 FDQGAVAQGELLHAVLERLTRHGKPEQVPDAAA-----IARWFGATGITDADAARATEAV 1060

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
             ++  +         +  +     +       ++        DR+       V + DYK 
Sbjct: 1061 RRMLAAEALAHVFDPARFDVAHNEVELFSPDGAL-----LRIDRLIERGD-EVLVVDYKL 1114

Query: 921  GDNPKKETAQKLIDPQLSLEAAALK 945
               P     +     QL   AAA+ 
Sbjct: 1115 RLLPV---ERAAYADQLRGYAAAVA 1136


>gi|322690607|ref|YP_004220177.1| DNA helicase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455463|dbj|BAJ66085.1| DNA helicase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 1343

 Score = 81.1 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/496 (11%), Positives = 134/496 (27%), Gaps = 28/496 (5%)

Query: 183 LAADFLKIASKYWTERLVELNAS---SPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTG 237
              D L    + + +   E N +           L+          +     +++     
Sbjct: 252 RKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGERTRRRYSHVLLDEYQD 311

Query: 238 SIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP--- 292
           +    A L++ +   +    + V    D       W   +  +  +   +          
Sbjct: 312 TSTTQAALLAALFHVDASQRSAVNAVGDPFQSIYAWRGASPGAFRMFQQDFHLPAGYKPF 371

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
             S+ +    + ++  +   L   SN     S ++ +  +          +     +   
Sbjct: 372 PLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDAPEGTLGVLGFA 431

Query: 353 QKCFSDVALIE-ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                  A++           S A        E K   A++   ++     +  L + G+
Sbjct: 432 TAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKAPVAVLFRSKSHMPEYQAALEQAGL 491

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              +     L        L +LL+      D  ++  L+  P       +  +       
Sbjct: 492 TTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAADLTMLARFAEE 551

Query: 472 ELVALR------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
           + +  R            D    +   + R    +    V      L  +  +L   L  
Sbjct: 552 QNMEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPDVLLRGDLVKLLERLSA 611

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN---------VCLDEHRKLPNLW 576
           H    IT         +   G   + D  +  +  L           +   +HR  P L 
Sbjct: 612 HGRNAITWAAVMLRQVHDAVG-RPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALA 670

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLE 635
                  +  + +   E  +    +   +I  +  L   E     +  +   + ++   +
Sbjct: 671 HMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQ 730

Query: 636 SRLLNFDTLILGGLNE 651
           S+ L +D + + GL  
Sbjct: 731 SKGLEWDAVAVVGLTA 746



 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 81/831 (9%), Positives = 209/831 (25%), Gaps = 88/831 (10%)

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                DL  L    +     +   F  +      +        +P     A++R   + + 
Sbjct: 537  MSAADLTMLAR--FAEEQNMEQRFQALVQAGLAQ------PDTPANEWAAVVREYRDQVA 588

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI---------VLPGLDCHIPTAIWNTI 274
                 P ++           +L+  ++ H   AI         V   +   +   I   I
Sbjct: 589  NAVFLPDVL-----LRGDLVKLLERLSAHGRNAITWAAVMLRQVHDAVGRPLGDVIRAGI 643

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
                 +I +       +PQ+     L  + +       + ++ +             L  
Sbjct: 644  EALDLDIDTVLAGVLHNPQHRANPALAHMPMD-----AIVDLVDTYTQEIAAEQTPSLHG 698

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEAD-NEREEAISIAIALRMSLDENKKKSALIT 393
              + + +   +E++  ++     DV L+    ++  E  ++A+    +      +   + 
Sbjct: 699  FITWVDHLASVEDEAASLPDAPVDVELMTVHQSKGLEWDAVAVVGLTAGGFPSNQGDHLK 758

Query: 394  ADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
               +       E   +       +A   L+      +       I       A   +   
Sbjct: 759  IVLDEHHTGGTEQGHWTAPEYHETADSWLTNPTAVPVPMRADAGILPRFPHDA--DVEAD 816

Query: 453  PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
            P+A             +     ++R   +  + +D     L +        H    +   
Sbjct: 817  PIA--SLAALDDVELIDDEVFGSMREFGDGVEEVDASGWYLTQAEEYGRRLHADERRLMY 874

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC-LQNVCLDEHRK 571
                +     L+ +                 +      + W ++      +   +     
Sbjct: 875  VALTRAREDALMTYCAYTGESGRDPSVVPKGSRAAQPSNFWLEVHDALQAREHAISAQDC 934

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI- 630
            +  L     GK +                           ++      P  + ++ + + 
Sbjct: 935  VERLQTANAGKPMLISAQGEAIAPPEGFFIGEHAAAYSDAVVGEAWQTPITQTNAAVELP 994

Query: 631  ----LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-- 684
                L       L+    ++   +  +     A        +  D     A+   GQ+  
Sbjct: 995  WPATLSDAVHEQLSRGIDVIAADSSSLEQHQDAGPLLQRAQLLVDDADLMADAASGQSLD 1054

Query: 685  ----AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                A    +    R  + +   R   +     R   R ++           + G  +  
Sbjct: 1055 EAVKAKAQRVLAAGRQNVTSLQARVGGMNEREERLYWRSIIRPIPRISSPAAEAGTQFHA 1114

Query: 741  WTRK-LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
            W  + ++           +  P +    +   F   + ++ D           L      
Sbjct: 1115 WAEQFINAGKPDEAVLAYEAEPSMPHTGQDAGFVSREAMLAD-----------LAERERQ 1163

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
             + P                          +    +  +  +    +N      + W+  
Sbjct: 1164 CRKPSTRQ-------------PAVPQPTAQQSVSAVSAVSATSISSDNATESKLVAWQRR 1210

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK------SGFV 913
              +             +     +      + +  +G+ + G  D + +        +   
Sbjct: 1211 LAE----------SSWAKRIPAWTERAIVVDVPGVGL-VNGKLDAVFIGGLDPSSTTARF 1259

Query: 914  DITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
             + D+KTG  P K         QL +    L A    ++D    A L+Y+ 
Sbjct: 1260 TVVDWKTGRRPTKPDDITRKLAQLDMYRLLLAAVEGVELDSID-ATLYYVS 1309


>gi|84497950|ref|ZP_00996747.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649]
 gi|84381450|gb|EAP97333.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649]
          Length = 838

 Score = 81.1 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 75/771 (9%), Positives = 197/771 (25%), Gaps = 117/771 (15%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +        + P     +     T +A  E+R    ++ G ++  +  + +    
Sbjct: 113 VLTHRIGYLLAARGVQP---GQILAITFTNKAAAEMRERVQDLVGPRARAM-WVMTFHSA 168

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                  +             ++    +       +  +  +I+D+  +     P +   
Sbjct: 169 CVRILRREADKV--------GMKSTFSIYDAADS-QRLMSMVIRDMDLDPKRYNPRT--- 216

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
               +  ++++ + +  EE     + +  + +           L  A   +  RL + NA
Sbjct: 217 ---FSHQVSNLKNELIDEETYAATVGSEPSAENPGGTH-TERLLAEAYTAYQRRLRQANA 272

Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA--- 256
                  +  +             +     I++     +  A  +L+  +          
Sbjct: 273 LDFDDIIMLTVHMLQAFPDVAEHYRRRFRHIMVDEYQDTNHAQYQLIRELVGSDEKRGEH 332

Query: 257 -----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                 ++   D       +   T ++            +P+     L       +  + 
Sbjct: 333 SVEPSELVVVGDADQSIYAFRGATIRNIVEFEV-----DYPEARTILLERNYRSTQTILT 387

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
               V      R                         +       + +     DNE +EA
Sbjct: 388 AANAVIARNESRRKKN---------------------LWTDSGSGAPIIGYVGDNEHDEA 426

Query: 372 ISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
             +A  +    DE+       A+       +R ++    R G+   +  G          
Sbjct: 427 SFVARTIDKLGDEHGVKPGDVAVFYRTNAQSRALEEVFVRVGLPYKVVGGTRFYERREVK 486

Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
              + L  +    D + +  ++  P    G   + +  A    E ++        +  D 
Sbjct: 487 DALAYLRVLSNPADTVNLRRILNVPKRGIGDRAEAVVAALAERERISFVEALGRPE--DA 544

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT--NKNSTCG 546
             +    IA  K  T +      + ++D      L++ I+     L   +   +      
Sbjct: 545 PGIATRSIACIKGFTALLEDLGTVRDDDNAGVADLLEAIVDKSGYLAELRASHDPQDETR 604

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
             ++++   +     +             + E+                           
Sbjct: 605 VENLAELVAVAREFDEARAETGEVNSLEDFLEQVS------------------------- 639

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             +    D      + E+   + ++    ++ L F  + L G+ +G +P   +       
Sbjct: 640 --LVADADEIPDSAEAEEQGVVTLMTLHTAKGLEFPVVFLTGMEDGTFPHLRS------- 690

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI-----YTRSLRENNIPTIASRWLQRLLV 721
                  L   ++   +    +      R  +       RS          SR+L  +  
Sbjct: 691 -------LADPKELEEERRLAYVGITRARERLHLSRAAVRSAWGAPQYNPPSRFLDEI-- 741

Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
                   + ++         ++           RP    P        S 
Sbjct: 742 ---PTELLSWERELSGLAAIGQRGQRPAVASLAARPGVRSPGNRPIIALSP 789


>gi|20091192|ref|NP_617267.1| hypothetical protein MA2359 [Methanosarcina acetivorans C2A]
 gi|19916303|gb|AAM05747.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 487

 Score = 81.1 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 73/251 (29%), Gaps = 26/251 (10%)

Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
            A  +L     L   D  + LK+  Q +      +         K          +  ++
Sbjct: 180 EAVHYLMVYRALRDGDCGNYLKEIQQKWSLIDPAMKAGEILSKMKTKSNGLRFNPETFSF 239

Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
           SFS +K     P     + IL++    +         +G+  H ++   +K+R+      
Sbjct: 240 SFSALKVYETCPKQYELQEILRMPSRKN-ADSTGAMTKGSFVHKVLETAVKERV------ 292

Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF-LEHEEKIQSSIEKIFVNIPAKM 889
                   I     K+                    F +            + V     +
Sbjct: 293 AEKRALYEIAETLHKKPEW------MYADLESTLPLFEVFWLRNKDRISNNLMVEKWFSV 346

Query: 890 AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            I+  G    G  DRIDLL      V+I DYKTG        +     QL L A      
Sbjct: 347 IID--GFVFKGIIDRIDLLDPSKKEVEIIDYKTGKYDVNPEDR---SRQLLLYA-----K 396

Query: 948 SFSQIDCRKVA 958
            F  +     A
Sbjct: 397 GFEHMYPGYTA 407


>gi|196228173|ref|ZP_03127040.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
 gi|196227576|gb|EDY22079.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
          Length = 678

 Score = 81.1 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 72/737 (9%), Positives = 178/737 (24%), Gaps = 130/737 (17%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             +     +     +  + +     T +A  E+R    ++          + +   +   
Sbjct: 36  RVITMRVAFLISQGVDPSHILAVTFTNKAADEMRERLAKMIEPSQAKKVTMSTFHALCVR 95

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD-IIKDLYPESPLSLPISPANAI 146
               D+                       L W+         D        +  + A   
Sbjct: 96  ILRQDIEK---------------------LGWKKNFSIYDEGDQMGLIKKIITRTAAKDE 134

Query: 147 WLAKNLA-DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
            L  N+A ++I   +               +                  +   L  LNA 
Sbjct: 135 KLDPNVAKNLISKAKNNGW----------REVSPGDEKTLA--GAVFARYQAELKTLNAV 182

Query: 206 SPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA---- 256
                 +  ++  +EH             +++     +      L+S +A    G     
Sbjct: 183 DFDDLLLLAVKVLSEHADVRDRWHRRFRYLMVDEFQDTNRLQLELVSMLAKPAEGTGGRP 242

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V    D       W      +     ++          + KL          +     +
Sbjct: 243 NVAVVGDDDQSIYGWRGAEVSNILEFEAHFPDP-----VVVKLEQNYRSTNAILNTANFL 297

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                 R                        K+ +       V ++   ++R+EA  IA 
Sbjct: 298 IKNNPRRRPK---------------------KLWSSAGDGDKVRIVGMSDDRQEAEFIAN 336

Query: 377 ALRM---SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            +     +     ++ A++      +R ++  L +  I   I  G           L + 
Sbjct: 337 EIAQRSVTESAPHEEFAILFRMNAQSRLLETNLRQLNIPYRIIGGKSFFDRREVKDLLAY 396

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            N +   +D +++  ++  P                           +S  +        
Sbjct: 397 ANCLVNTDDDVSLLRIINTP-----------------------ARGISSNTVEKATDFSA 433

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
            +  +  +      ++  L++   E     V+ + +  T L T             +SD 
Sbjct: 434 KQKCSVFDVLTNEAFRGTLTKRTVESLDRFVEMLDRFETKLNT------------PLSDH 481

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-- 611
             +    ++     +  K      +E     ++L   +         ++      +    
Sbjct: 482 AAVLREMMKETGYLDELKRTCKTPQEALSRETNLMDLLKSFEDYQGRSSEGLRGFLDEMS 541

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
           L           + + + ++    ++ L +  + L GL EG           L       
Sbjct: 542 LRQEREEDDDDARGTGVTLITLHAAKGLEYPHVYLIGLEEG----------LLPHDRSKL 591

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE----NNIPTIASRWLQRLLVLGGTD 726
                 E+        +      R  L  +         + +P   S +++ L       
Sbjct: 592 EGTVDEER-----RLLYVGITRARRTLALSWCRHRIRYGSPMPCTPSSFIKELPPEWIIH 646

Query: 727 FFDNLKKRGQCYLDWTR 743
                  +        +
Sbjct: 647 RDATQILQAPVSEAAAK 663


>gi|318042807|ref|ZP_07974763.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CB0101]
          Length = 802

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 82/789 (10%), Positives = 202/789 (25%), Gaps = 124/789 (15%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK---STILPIIKSLG 82
           L   +        ++P   A +     T +A +E++     +  +K   S       +L 
Sbjct: 38  LTHRIAHLIGQHGVDP---AELLAVTFTNKAAREMKERLELLLAQKLAQSQFGQPWSTLP 94

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            V + +  + +      +  +     L   ARL+    +K  D     +           
Sbjct: 95  AVEQRQLRSRIYRDVIKDLWIGTFHALF--ARLLRFDIDKFRDPEGLTWTRQFSIYDEGD 152

Query: 143 ANAIW---LAKNL------------ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
             ++    + + L               I   + +    E L A    +           
Sbjct: 153 TQSLVKEIVTQELGLDPKRFEPKKVRWAISNAKNQGWIPEQLEADAGGQR-------GKL 205

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPAT 242
           +    + +   L   NA       +  ++      E  H        +++     +    
Sbjct: 206 MAETYRRYRRALAANNALDFDDLLLLPVQLLRQNDEVRHYWHRRFKHVLVDEYQDTNRTQ 265

Query: 243 ARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
             L+  +              G  V    D       +             +        
Sbjct: 266 YELIKLLVADGRDPADFGEWQGRSVFVVGDADQSIYSFRAADFTILMGFQEDFGDGAPDD 325

Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            +  + +  L+        +   +N +   +                 T+ ++  +   +
Sbjct: 326 AT--RTMVKLEENYRSTATILEAANALISNN-----------------TERIDKVLRPTR 366

Query: 354 KCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLELTRF 409
                + L   D+E  EA ++   +RM      D   +  A++      +R ++  L R+
Sbjct: 367 GDGELITLTRCDDEIAEAEAVVHRMRMLEAANPDLGWRDMAVLYRTNAQSRAMEESLVRW 426

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
           GI   +  G+          +   L  +    D +++  ++  P    G           
Sbjct: 427 GIPYVVVGGLRFYDRREIKDILGYLKLLVNPADTVSLLRVLNTPKRGIGKTTIERLS--- 483

Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                                          + ++           D E    L     +
Sbjct: 484 -------------------------------DASNQLGIPLWDVVSDPEAVRSLGGRSAK 512

Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVT----CLQNVCLDEHRKLPNLWFEEEGKTLS 585
            +        +  +       S+  ++ +       + +               E    +
Sbjct: 513 GLLQFSELIRSLQARAETAPPSELVQVVMEQSGYVAELIAAGTDEAEDRRRNLNELVNAA 572

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
             + +  E GS          D +           K  +   + ++    S+ L F  + 
Sbjct: 573 LQYQEENEEGS--------LDDFLASAALASDADSKDTEQDRVTLMTLHASKGLEFPVVF 624

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
           L GL +G++P   + +   +   +  L      +   +        +          +R 
Sbjct: 625 LVGLEQGLFPSYRSLDDPAAMEEERRLCYVGITRAKERLF-----LSHASERRLWGGMR- 678

Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
              P + S +L  L          +L + G   L    +L+  T+    +  +     +A
Sbjct: 679 --EPAVPSVFLSELPDEL---VQGDLPRSGGAALRRENRLERLTRVDRAESEQVRSVGDA 733

Query: 766 QPRTYSFSE 774
                +   
Sbjct: 734 AQPANAVRR 742


>gi|312197574|ref|YP_004017635.1| hypothetical protein FraEuI1c_3758 [Frankia sp. EuI1c]
 gi|311228910|gb|ADP81765.1| hypothetical protein FraEuI1c_3758 [Frankia sp. EuI1c]
          Length = 347

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 73/255 (28%), Gaps = 24/255 (9%)

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                    P +    + S S     ++ P     R + +L   P          RGT+ 
Sbjct: 51  PAAPGDASVPGQRFVGSLSPSRAADFVSCPLKYRFRVVDRLPEPPSP-----AATRGTMV 105

Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDS-------HFEKENLPPHIDIIWRHLFHKISH 865
           H+++  L        TPE    +     +                     W     ++  
Sbjct: 106 HSVLERLFDLPPAGRTPEAAVELLPAAWADLLAREPELAAMFPDGEALEAWLASARELLA 165

Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL--LKSG-FVDITDYKTGD 922
            +   E+  +  +      +  +  +   G+ L G+ DR+D      G  + + DYKTG 
Sbjct: 166 GYFALEDPRR--LAPAARELYVEHVL-GSGLRLRGYVDRLDEATTPDGLALRVVDYKTGR 222

Query: 923 NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
           +P        +  Q+   A  L       I       L    L  +  +    ++    +
Sbjct: 223 SPGPAFEGTAL-FQMRFYALLLWR-----IRGVVPRELRLYYLGDRTWLRVTPDESDLLA 276

Query: 983 ADELSEKSLKNLIEI 997
            +   +     +   
Sbjct: 277 TERRVQALWAAIDRA 291


>gi|116073016|ref|ZP_01470278.1| possible exodeoxyribonuclease V gamma chain [Synechococcus sp.
           RS9916]
 gi|116068321|gb|EAU74073.1| possible exodeoxyribonuclease V gamma chain [Synechococcus sp.
           RS9916]
          Length = 1078

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 98/866 (11%), Positives = 221/866 (25%), Gaps = 51/866 (5%)

Query: 39  LNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98
             P +L    + V T    + L  +         T          ++    T D LL   
Sbjct: 24  HPPGVLEEAQVVVNTWPTSRWLGEQLALANPSGITANLRFPFPTSLLRH--TVDGLLEQQ 81

Query: 99  LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA------NAIWLAKNL 152
            +   ++  R   L   +L    +L D       +  L+   S A          LA+ +
Sbjct: 82  SSGGGADPWRAQNLVWPLLELLPELLDHPASAPLQHWLNTRKSAALEVLDPPLWQLARAI 141

Query: 153 ADIIDIIETEEKKW--EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
           AD ID             L     +  G        + +   +    RL           
Sbjct: 142 ADAIDDYSLYRPAMLEAWLKGQATDARGTPLSPTMLWQQQLMQQLHSRL---GCLPFGMR 198

Query: 211 QIALMRAEAEHL--MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              L+R   E     +  + P+ + G +   P    L+  ++   +  + L      +  
Sbjct: 199 ARQLIRRLQEGWRPERPPQPPLRLFGLSSLAPVQVELLQALSCLRSIELYLLTPCPELWQ 258

Query: 269 -----AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                     + E+      S             +LL+     +    R  +        
Sbjct: 259 RQSSIESQAPLDEEWLLTVPSVEARFGRLGAEFQQLLEGSGETQLGSWRALDPFFFPATT 318

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
           +    K     +             +    +    +          +   +   +   L 
Sbjct: 319 ASSQGKEPTLLEQLQEHLVHGTPTDLLPRTEDDQSLQFHACPGRLRQLQVLRDQILQLLA 378

Query: 384 EN----KKKSALITADRNLARRVKLELTRFGI------NIDISAGIPLSTTLHSSILTSL 433
            +     +   ++T        +   +              ++     S    S  +  L
Sbjct: 379 NDDSLEPRDILVMTPQVEAFAPLVSAVFGDNDATGVRLPWRLTDRSQQSEAGISQGVLQL 438

Query: 434 LNAIFKLNDFMAIATLVKH-PLAK-FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
           L    +     A+ T++ + PL +              +L+    R   +S D     + 
Sbjct: 439 LALGGERLTASALETVLANAPLLRAHQLEPDEAEDITQSLQQAGFRWGLDSRDRGGDPTH 498

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHILQCITPLVTYKTNKNSTCGNLS 549
            L     +     V      L+ E+     L   ++   + +  L   + +      + S
Sbjct: 499 SLAWAIDRLVLGVVYPETPGLALENTAPMALPGSLEQQGRWLGLLRQLQRSLQWLSHSRS 558

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
           +  W +     L  +  D       L       T        +   S ++ +A    +++
Sbjct: 559 VQAWVEGLRPQLMALFADGGDWAWELQTIHSVLTDWGE----VAGNSSLELSAPVVGEVL 614

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
              +   + +    +S  L I      R +    L+L GL+ G +P+   +  F     Q
Sbjct: 615 AERLSEGSGRFGH-RSGALTISALEPMRAIPHKVLVLMGLDAGAFPRQRQRPGFHLMEQQ 673

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             L   ++            + +  +HL+ + S R+           + L        + 
Sbjct: 674 RLLGDPSSGDQDRYV-LLEALLSARQHLLVSWSCRDERTG-------EPLEASTPVRQWI 725

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
           +L  +          L+ +   P    P                          A     
Sbjct: 726 DLLPQVPVREHAANALERSNFLPSEAWPPASCDQRLLQVRQHLDAGTIGGTAGLAF---S 782

Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
           I                D    +     +   +++     E  + +  + D   ++    
Sbjct: 783 ITPHKSPDGPALPLSAWDDLISWVTAPQKQWLEQLGLRPREHENAVLDLEDLSLDERQRS 842

Query: 850 PHIDIIWRHLFHKISH-SFLEHEEKI 874
             +         + +   +L  +   
Sbjct: 843 ALLRQELGRDQEENAEPDWLALDRGR 868


>gi|296130376|ref|YP_003637626.1| ATP-dependent DNA helicase PcrA [Cellulomonas flavigena DSM 20109]
 gi|296022191|gb|ADG75427.1| ATP-dependent DNA helicase PcrA [Cellulomonas flavigena DSM 20109]
          Length = 858

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 68/699 (9%), Positives = 160/699 (22%), Gaps = 106/699 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R    ++ G  +  +  + +           +            
Sbjct: 124 GEILAITFTNKAAAEMRERVEQLVGPSAQRM-WVSTFHSACVRILRREA--------ATL 174

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++    +         +L  ++       P   P         AK L   I  ++ E  
Sbjct: 175 GLRTSFSIYDQADS--QRLLTLVARELELDPKRYP---------AKALGHKISALKDELV 223

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             +   A         +             + +RL + NA       +  +         
Sbjct: 224 DPDAFAASNGGGRSDEFDTVLAQ---VYTRYQQRLQQANALDFDDLIMRTVHLLQAFPQV 280

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-------IVLPGLDCHIPTAIWN 272
               +     +++     +  A   L+  +A              +    D       + 
Sbjct: 281 AEHYRRRFRHVLVDEYQDTNHAQYVLVRELAGVGEATEGGVGRGELTVVGDADQSIYAFR 340

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             + ++      +                               +  +            
Sbjct: 341 GASIRNIMEFEEDYPD--------------------------ATTILLEQNYRSTQTILS 374

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKS 389
             +    +N+     ++         +    AD E EEA  +A  +    D         
Sbjct: 375 AANAVISKNSGRQAKRLWTDSGAGPQIVAYVADTEHEEARFVAEEIDRLGDSESVRPGDV 434

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A+       +R ++  L R G+   +  G             + L A+   +D ++   +
Sbjct: 435 AVFYRANAQSRALEEVLVRVGLPYKVVGGTRFYERKEIKDAIAYLRAVANPDDDVSTRRI 494

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
           +  P    G   + +  A    E V+                                  
Sbjct: 495 LNEPKRGLGERSEAMVAAFAERERVSF-----------------------GAALARLDEV 531

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
             L              + +     V+           L  S +     +          
Sbjct: 532 PGLGSRALTGLRAFASMLDELRDLAVSGAGPAQVLGAALDRSGYLATLRSSDDPQDGSRV 591

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
             L  L         S     + +    +   A      +    D E        +  + 
Sbjct: 592 DNLAELHAVAAEFEESDPEGDLTDFLERVSLVADSDQIPVPDGADDEATVAAARDAGVVT 651

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
           ++    ++ L F  + L G+ +G +P   +              L   ++   +    + 
Sbjct: 652 LMTLHTAKGLEFPVVFLTGMEDGTFPHMRS--------------LADPDQLAEERRLAYV 697

Query: 690 MANGTR-HLIYTRS----LRENNIPTIASRWLQRLLVLG 723
                R  L  +R+              SR+L  +    
Sbjct: 698 GLTRARQRLYVSRAAVRTAWGVPNEFPPSRFLDDIPDEL 736


>gi|312875658|ref|ZP_07735659.1| putative ATP-dependent nuclease subunit B [Lactobacillus iners LEAF
           2053A-b]
 gi|311088912|gb|EFQ47355.1| putative ATP-dependent nuclease subunit B [Lactobacillus iners LEAF
           2053A-b]
          Length = 1157

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 101/891 (11%), Positives = 239/891 (26%), Gaps = 135/891 (15%)

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
           DL+++ +E            L+I    + + L +    +       +++   +  +    
Sbjct: 138 DLNSISHEAVTEETSRKLHDLQIIYDEFIKMLGDH--FTTKDGIQLILKTVLDKKLSIDN 195

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
                 G +    +   ++  +A   + ++                  +   N       
Sbjct: 196 MNFFFCGFSYFSLSELNIVKIIAKKAHLSVFAF------------KTKDAQINDKVMEGD 243

Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
           Y    Q ++AKL++F ++            N        ++  +               N
Sbjct: 244 YDYIVQSTIAKLINFFNVNSLKFSTKEYGYNINLNNKEKLNAIWT-------------GN 290

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL 404
                    + V LI+AD+   E   +A  +   +       K   ++  + +       
Sbjct: 291 IPQQGLDLTNYVHLIKADSRYAEINFVAQTIYQQVVFNHYRYKDFLVLAPNLSEYETYLT 350

Query: 405 -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPE 461
              ++  I++       +       ++ ++ +          I T++K  L   ++   +
Sbjct: 351 PIFSQNNISMFNDLQKQMKFHPLVVLIENIADINDMGFKTQDIITILKTRLLIPEWYTDD 410

Query: 462 KYLSRAKNALELVALRGNKNSYDI----MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                  + LE   L  N N         D     +  +              +   E+ 
Sbjct: 411 IKFIADVDLLENFVLAHNINHQLWKKSFYDFVDNNISHLDQINEKVEKLDKLRQFIIENI 470

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +  +  +  +      + ++         N  +  W        ++  ++          
Sbjct: 471 DNLITQLHKLTNVQEAVTSFWDFLLKNQINKKLEKW--------RDTAINNGDLQLAQQP 522

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           E+    L+ L    +      + N   + DI+                  + +      +
Sbjct: 523 EQIWALLNKLLKDYVLIAE--EFNTENFFDILISGFSEANFSQIPSVLDAVTVSEIGMVQ 580

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY-----------IGQAAH 686
             +F  + + G      PK   K  FL+    ++LN   A++            + Q   
Sbjct: 581 NNSFKQVFIIGAVNNSLPKIQNKPGFLNIENINELNNSIADEQQYIENNQEVNNLDQTYQ 640

Query: 687 DFEMANGTRH-LIYTRSL-RENNIPTIASRWLQRLLV--LGGTDFFDNLKKRGQCYLDW- 741
             ++ +     +  +  +   +N    AS + Q +            +L +  Q  L + 
Sbjct: 641 FGDVLSLASDGVYISYPIINVSNEKMEASIFYQDIKNTLNLTEYVQHDLPENQQQLLSFI 700

Query: 742 -------------------------------TRKLDYTTKQ-------PHYKRPKPFPPL 763
                                             L     Q       P    P     L
Sbjct: 701 TTPQASLGYIVYLKNKTNDDISNLLALTPSNQALLFDNVIQASSFKNKPVNLTPALAQEL 760

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                  S S+++    + Y  +    L L     F+ +      G  +H  +  L+K  
Sbjct: 761 YGNNINISISQLETFYANSYEYFLTYGLHLHKR--FENELTNIQSGNYYHETMDRLVKYL 818

Query: 824 INKNTPEIN------HLMKQIIDSHFE-----KENLPPHIDIIWRHLFHKISHSFLE--H 870
                           ++   I    +     +E L    +        + +   +   H
Sbjct: 819 KQHKLDFAELTKDKISVILANIQDELKTKGSYRELLGDPFNEFLFKCLDRTTKKVVNYWH 878

Query: 871 EEKIQSSIEKIFVNIPAKMA--IESIG------------IHLTGFADRIDLLK--SGFVD 914
           +   Q+    ++  +       I  +             I L G  DR+DLLK     + 
Sbjct: 879 QNMFQTKFCPLYSELSFGNKEYIAGLSYQFIDKQQKTHHISLRGKIDRVDLLKDCDNEIL 938

Query: 915 -ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG-SFSQIDCRKVANLFY 962
            + DYK+          +  I  Q+    + L+        +   +   FY
Sbjct: 939 QLIDYKSSAKKFDFNLFKNGISMQMLSYLSVLQDNSHIFSTNPVNIFGAFY 989


>gi|251767077|ref|ZP_02265907.2| ATP-dependent DNA helicase Rep [Burkholderia mallei PRL-20]
 gi|243063896|gb|EES46082.1| ATP-dependent DNA helicase Rep [Burkholderia mallei PRL-20]
          Length = 738

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 85/708 (12%), Positives = 178/708 (25%), Gaps = 101/708 (14%)

Query: 34  FRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP------------IIKSL 81
                  P  +A+VT    T +A  E+R    ++   K+   P             + + 
Sbjct: 80  IEAKGFEPRHIAAVT---FTNKAAAEMRERVGKLLEGKTLTTPGKEGRKVPVNQLTVCTF 136

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             +  +    +                          +     D    +  E   +    
Sbjct: 137 HSLGVQILRQEAEHVGLKP-----------------QFSIMDSDDCFGMIQEQIGTTDK- 178

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 L + +  II + +      E+  A+           A        + +   L  
Sbjct: 179 -----GLIRKIQTIISLWKNGLVAPEE--AMTIAANEDEHQAAL-----VYRNYVATLHA 226

Query: 202 LNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             A              A +       +     ++I     +      L+  +A     A
Sbjct: 227 YQAVDFDDLIRLPTELFARNEPVRDRWQNRLRYLLIDEYQDTNACQYELLKLLAG--PRA 284

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                 D       W   T ++      +              +  L+       R+   
Sbjct: 285 AFTAVGDDDQAIYGWRGATLENLAQLGKDFP---------KLHVIKLEQNYRSTVRILTA 335

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +N +   +  + +  L  +                       + +   ++E  EA S+  
Sbjct: 336 ANNVIANNPKLFEKKLWSEH-----------------GMGDSITVTPCNDEEHEAESVVF 378

Query: 377 ALRMS---LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            L           +  A++      AR  +  L R  I   +S G           L + 
Sbjct: 379 RLSAHKFERRTQFRDYAILYRGNFQARVFEQVLRRERIPYVLSGGQSFFDKAEIKDLCAY 438

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L  I   +D  A    V  P    G        A      V+L        I       L
Sbjct: 439 LRLIANADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGI----EARL 494

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                +         Q      DKE A +++D +++ I          +         + 
Sbjct: 495 SARQVEPLRIFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNV 554

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +      +     E             +      ++       +       + +I  + 
Sbjct: 555 LEFLEWLKRKGTKPE------------AEQAVDGEAEGFHNADGLADTGKNLLGLIQTVA 602

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               ++ K E    + +     S+ L +  + L G+ EG+ P +   +       + +  
Sbjct: 603 LMSMLEGKEEDPDAVRLSTVHASKGLEYPHVFLVGVEEGIMPHSGGSDDGPIDDERIEEE 662

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYT--RSLRENNIPTIASRWLQRL 719
               E+ +   A     A  + HL +   R      I    SR++  +
Sbjct: 663 RIEEERRLMYVA--ITRAQRSLHLNWCKKRKRARETIVCEQSRFIAEM 708


>gi|317968538|ref|ZP_07969928.1| UvrD/REP helicase [Synechococcus sp. CB0205]
          Length = 792

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 83/784 (10%), Positives = 201/784 (25%), Gaps = 112/784 (14%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK---STILPIIKSLG 82
           L   +        ++P   A +     T +A +E++     +  +K   S       +L 
Sbjct: 36  LTHRIAHMIGQHGVDP---AELLAVTFTNKAAREMKERLELLLAQKLAQSQFGQPWSTLA 92

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            V + +  + +      +  +     L   ARL+    +K  D     +           
Sbjct: 93  AVDQRQLRSRIYREVIKDLWIGTFHALF--ARLLRFDIDKFRDPEGLTWTRQFSIYDEGD 150

Query: 143 ANAIW---LAKNL------------ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
             ++    + + L               I   + +    E L A    +           
Sbjct: 151 TQSLVKEIVTQELGLDPKRFEPKKVRWAISNAKNQGWMPEQLEADAGGQR-------GKL 203

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPAT 242
           +    + +   L   NA       +  ++   ++             +++     +    
Sbjct: 204 MAETYRRYRRALAANNALDFDDLLLLPVQLLRQNDQVRNYWHRRFRHVLVDEYQDTNRTQ 263

Query: 243 ARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
             L+  +          +   G  V    D       +             +        
Sbjct: 264 YDLIKLLVTDGRDPESFDDWAGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGDG---- 319

Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                                    ++       +      +     N++ ++  +   +
Sbjct: 320 ---------------APDEATQTMVKLEENYRSTATILEAANVLIANNSERIDKVLRPTR 364

Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTRF 409
                + L   D+E  EA ++   +RM    +        A++      +R ++  L R+
Sbjct: 365 GQGELLTLTRCDDEIAEAEAVVHRMRMMDAAHPDLSWGDMAVLYRTNAQSRAMEESLVRW 424

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
           GI   +  G+          + + L  +    D +++  ++  P                
Sbjct: 425 GIPYVVVGGLRFYDRREIKDMLAYLKLLVNPADTVSLLRVLNTP---------------- 468

Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                             +    ++R+    N   +P W      E            L 
Sbjct: 469 ---------------KRGIGKTTIERLTDAANQLGIPLWDVVSDPEAVRSLGGRSAKGLL 513

Query: 530 CITPLVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
               L+    +++       +     + +    + +               E    +  +
Sbjct: 514 QFCELINNLKDRSQEAAPSELVQLAMEKSGYVAELIAAGTDEAEDRRRNLNELVNAALQY 573

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            +  E GS          D +           K      + ++    S+ L F  + L G
Sbjct: 574 QEENEEGS--------LEDFLASAALASDADSKDTDQDRVTLMTLHASKGLEFPVVFLVG 625

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
           + +G++P   +     +   +  L      +   +        +          +RE  +
Sbjct: 626 MEQGLFPSYRSLEDPAAMEEERRLCYVGITRAKERLF-----LSHASERRLWGGMREPAV 680

Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
           P++    L   LV G          R +  LD   ++D         +P       A  R
Sbjct: 681 PSVFLSELPEALVQGDIPRSGGAAIRREQRLDRLTRVDRPDAAASSSQPANAVRRRAPAR 740

Query: 769 TYSF 772
           T+S 
Sbjct: 741 TWSV 744


>gi|289178716|gb|ADC85962.1| PcrA [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 1037

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 79/688 (11%), Positives = 175/688 (25%), Gaps = 79/688 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + V     T +A  E+R     + G  +  +  + +           D            
Sbjct: 194 SQVLAITFTNKAAAEMRERLGALIGGVADRM-WVSTFHSACVRILRRDGEQIG--LKSGF 250

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK-NLADIIDIIETEE 163
            I    +  RLI +        IK   P S L+      N +  A   LA      +   
Sbjct: 251 TIYDTADCERLIKLVCADFNIDIKRFTPRSILARISDYKNQLTDASTALAQYAPDFKP-G 309

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
            +      + + +             +    +  RL   NA       +  +        
Sbjct: 310 MRHYSFGQIGDPEPV---------YAVVYAEYQYRLALANAVDFDDLIVRTVELLRTQPH 360

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I++     +  A   L+  +A          G+D H P+    T   KS
Sbjct: 361 VAEYYRHKFRYILVDEYQDTNHAQYVLVRELA----------GVDAHEPSDPMATEAGKS 410

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                +    S    Y+        +I+  +       +  +              +   
Sbjct: 411 GPAWVTVVGDSDQSIYAFRGADIR-NIQDFEKDFPDARTIMLEQNYRSTQTILDAANAVI 469

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395
             N+     K+         +    AD  + EA  IA  +    +E        A++   
Sbjct: 470 AHNSARKPKKLWTALGEGDKIIGYAADTAQLEAHWIAQQILHLHEEKGLPYSDMAIMYRA 529

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L +  I   +  G             + L AI    D + +  ++  P  
Sbjct: 530 NAQSRSLEEGLIQAHIPYQLIGGTKFYERREVKDAIAYLQAIVNPADDINMRRILNVPKR 589

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G   +                                                  + E
Sbjct: 590 GLGTRAESQLTLFANEHNQTF----------------------------------WWAIE 615

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             E    +       +       T+  +  G    S  +++    L+   + E  +    
Sbjct: 616 QLEDIEGMSARTANAVRAFRELMTSLRTFAGEHD-SKPSEIVAQVLEQSHMLELLRKSED 674

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKAN--AIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
             +E      S    +         +     +++    + D + +  +   S  + ++  
Sbjct: 675 PQDESRVENLSQLQSVAAEFEQNTPDTTLAGFLETTALVADSDQLPGEGHDSGKVTLMTL 734

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L +  + L G+ +G +P + A         +  L      +   +          
Sbjct: 735 HTAKGLEYPIVFLTGMEQGTFPHSRAMENMDELSEERRLAYVGITRAKRRLYLTRAA--- 791

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLV 721
                  R+        + S++L  +  
Sbjct: 792 ------VRAQWGRQSEMMPSQFLDEIPD 813


>gi|51893634|ref|YP_076325.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51857323|dbj|BAD41481.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 671

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 74/709 (10%), Positives = 165/709 (23%), Gaps = 120/709 (16%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP-----PVS 104
              T +A +E+R   + + G  +  + +I++            +                
Sbjct: 60  ITFTNKAAREMRDRAVALVGADARRV-MIRTFHSAAMVLLRQYIGDFPESGRTPSFTVAD 118

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
              +L  L   I      L     + +                        I   + E  
Sbjct: 119 PTIQLALLKEAIAERNFDLKANRPESFLWR---------------------IGRYKNELA 157

Query: 165 KWEDLHALKNEKYGMWWLLAADFLK-----------IASKYWTERLVELNASSPVGYQIA 213
             E L A +     M W    + ++              K + E+L   +          
Sbjct: 158 DPESLLARQPSHDLMDWSRVLEMIRSTDRYVNRLTAEIWKRYEEKLRRNDMVDFDDLINL 217

Query: 214 LMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
            ++           ++     + +     +  A   ++  +A       V+   D     
Sbjct: 218 FVQMLREKPDIRADLQRRFTYLQVDEFQDTNVAQLHMVKLLAGKRQN--VMAVGDDAQSI 275

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             W +   +       +   +                           +  +        
Sbjct: 276 YSWRSADIRCILEFERHFPGAR--------------------------TILLEQNYRSTG 309

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK- 387
                 +     N      ++         V   EA+ E +EA  +   +R   +  ++ 
Sbjct: 310 AIIRAANRLIAHNAGQRPKRLFTAAPEGRPVVAHEAETEVDEAKWVVQRIRAGAEAGRRW 369

Query: 388 -KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              A++       R  + EL    I   +  G             + L  +    D +++
Sbjct: 370 GDFAILYRTTAQGRPFEEELREASIPYQVVGGPRFYDRREVQDSLAYLRLVHNPRDSVSL 429

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
             ++  P                       R       +  L +L   R         V 
Sbjct: 430 ERVLNAP-----------------------RRGIGERGLQRLLALAAQRGVDLIAALRVA 466

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
             +  L +E    A  L DH+ +    L              ++    + +         
Sbjct: 467 ADEGVLQDEAAAGARQLHDHLRRAREALER-----QPGRFAAAMERLLRESGYLAYLQEE 521

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
           D  ++       E        F +    G         ++D +  L   E          
Sbjct: 522 DRRKEERRSEVVESLIAAMHEFERRSPDGGLGA-----YLDHLALLEGQED----ESGGD 572

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            + +     ++ L +  + + G+ +G           L      +      E+ +   A 
Sbjct: 573 VVKLQTIHSAKGLEYPVVFVVGMEQG----------LLPYQRALEEGNLEEERRLCYVAI 622

Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
                         R  R   + T  S++L   L  G            
Sbjct: 623 TRAREELYLTGARVRWQRGEMVLTTPSQFLSEALGPGPAQPLWVPASAD 671


>gi|291303528|ref|YP_003514806.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM
           44728]
 gi|290572748|gb|ADD45713.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM
           44728]
          Length = 762

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 79/744 (10%), Positives = 183/744 (24%), Gaps = 108/744 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTAD-LLLSYNLNPPV 103
             +     T +A  E+R     + G ++ ++  + +           +   L+      V
Sbjct: 68  GEILAITFTNKAAAEMRDRVSSVVGNRARMM-WVLTFHAACMRILRREHERLNLKSTFTV 126

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            +      L + +                                   L   +  ++ E 
Sbjct: 127 YDSDDSRRLMQQVARDMELDKRHTPRG---------------------LLASVSRLKNEL 165

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA--EAEH 221
              +   A             A+  K   +        L+    +G+ + L RA  +   
Sbjct: 166 IDPDAAMAAVET---PHHRTVAEAYKRYDERLRAAHA-LDFDDIIGHTVHLFRAYPQVAR 221

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP------GLDCHIPTAIWNTIT 275
             +     +++     +  A   L+  +         +P        D       +   T
Sbjct: 222 EYRRRFRHVMVDEYQDTNHAQYELVRALVGDDATDEEVPPSQLCVVGDADQSIYAFRGAT 281

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++      +                               +  +              +
Sbjct: 282 IRNILEFERDFPD--------------------------ATTILLEQNYRSTQTILDAAN 315

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALI 392
               +N    + K+       + +   +ADNE +EA  +A  +    D +    +  A+ 
Sbjct: 316 GVIRKNPSRKDKKLWTDSGPGAKIKRYDADNEHDEAAWVAERIDALADSDGVKPRDVAVF 375

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R  +    R GI   +  G+            + L      +D ++   +V  
Sbjct: 376 YRTNAQSRVFEDAFIRRGIPYKVVGGVRFYERKEVRDALAYLRLTVNEDDIVSGRRVVNV 435

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P    G        A    E ++                                    +
Sbjct: 436 PKRGIGDRAVACVDALADREQISF-----------------------GAALRRVDEAVGI 472

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
           S          V  +      +   +  +      L+ S +                  L
Sbjct: 473 STRAAGGVKKFVAVLDAARERVDAGEPPEVVLETLLNDSGYLAELNASTDPQDEARVDNL 532

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
             L       T        +++       A     +       +   P+ +    + ++ 
Sbjct: 533 QELVSVAREYTERVEAEVDVDSDVPGPTVANFLEQVSLVADADQIPDPEADSDGVVTLMT 592

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L FD + L G+++GV+P   +              L  A++   +    +    
Sbjct: 593 LHTAKGLEFDVVFLSGMDQGVFPHERS--------------LGEAKEMEEERRLAYVGIT 638

Query: 693 GTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
             R L++     TRS          S++L+ +      +    + K         R +  
Sbjct: 639 RARQLLHVSRAETRSAWGQPQFHPPSQFLEEMPGELL-EAERAVAKSALGIPGVRRGMST 697

Query: 748 TTKQPHYKRPKPFPPLEAQPRTYS 771
                  KRP    P+ +     S
Sbjct: 698 AELTTP-KRPAGDIPVLSAGDRVS 720


>gi|213692896|ref|YP_002323482.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524357|gb|ACJ53104.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320459071|dbj|BAJ69692.1| DNA helicase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 1343

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/496 (11%), Positives = 129/496 (26%), Gaps = 28/496 (5%)

Query: 183 LAADFLKIASKYWTERLVELNAS---SPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTG 237
              D L    + + +   E N +           L+          +     +++     
Sbjct: 252 RKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGERTRRRYSHVLLDEYQD 311

Query: 238 SIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY-STHPQY 294
           +    A L++ +   +    + V    D       W   +  +  +   +    + +  +
Sbjct: 312 TSTTQAALLAALFHVDASRRSAVNAVGDPFQSIYAWRGASPGAFRMFQQDFHLSAGYKPF 371

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            L+       I  E    L         R        +   + D                
Sbjct: 372 PLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDAPEGTLGVLGFA 431

Query: 355 CFS---DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                 D  +           S A        E K   A++   ++     +  L + G+
Sbjct: 432 TAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKAPVAVLFRSKSHMPEYQAALEQAGL 491

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              +     L        L +LL+      D  ++  L+  P       +  +       
Sbjct: 492 TTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAADLTMLARFAEE 551

Query: 472 ELVALR------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
           + +  R            D    +   + R    +    V      L  +  +L   L  
Sbjct: 552 QNMEQRFQSLVQAGLAQPDTSANEWAAVVREYRDQVANAVFLPDVLLRGDLVKLLERLSA 611

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN---------VCLDEHRKLPNLW 576
           H    IT      +  +   G   + D  +  +  L           +   +HR  P L 
Sbjct: 612 HGRNAITRAAVMLSQVHDAVG-RPLGDVIRAGIEALDLDIDTVLAGVLHNPQHRANPALA 670

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLE 635
                  +  + +   E  +    +   +I  +  L   E     +  +   + ++   +
Sbjct: 671 HMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAPVDVELMTVHQ 730

Query: 636 SRLLNFDTLILGGLNE 651
           S+ L +D + + GL  
Sbjct: 731 SKGLEWDAVAVVGLTA 746



 Score = 45.3 bits (105), Expect = 0.062,   Method: Composition-based stats.
 Identities = 74/811 (9%), Positives = 188/811 (23%), Gaps = 48/811 (5%)

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE-RLVELNASSPVGYQIALMRAEAEHL 222
                DL  L    +     +   F  +      +        ++ V      +       
Sbjct: 537  MSAADLTMLAR--FAEEQNMEQRFQSLVQAGLAQPDTSANEWAAVVREYRDQVANAVFLP 594

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
                +G ++      S      +             +      +   I   I     +I 
Sbjct: 595  DVLLRGDLVKLLERLSAHGRNAITRAAVMLSQVHDAVGRP---LGDVIRAGIEALDLDID 651

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            +       +PQ+     L  + +       + ++ +             L    + + + 
Sbjct: 652  TVLAGVLHNPQHRANPALAHMPMD-----AIVDLVDTYTQEIAAEQTPSLHGFITWVDHL 706

Query: 343  DILENKIPNIQKCFSDVALIEAD-NEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
              +E++  ++     DV L+    ++  E  ++A+    +      +   +    +    
Sbjct: 707  ASVEDEAASLPDAPVDVELMTVHQSKGLEWDAVAVVGLTAGGFPSNQGDHLKIVLDEHHT 766

Query: 402  VKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
               E   +       +A   L+      +       I       A   +   P+A     
Sbjct: 767  GGTEQGHWTAPEYHETADSWLTNPTAVPVPIRADAGILPRFPHDA--DVEADPIA--SLA 822

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                    +     ++R   +  + +D     L +        H    +       +   
Sbjct: 823  ALDDVELIDDEVFGSMREFGDGVEEVDASGWYLTQAEEYGRRLHADERRLMYVALTRARE 882

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC-LQNVCLDEHRKLPNLWFEE 579
              L+ +                 +      + W ++      +   +     +  L    
Sbjct: 883  DALMTYCAYTGESGRDPSVVPKGSRAAQPSNFWLEVHDALQAREHAISAQDCVGRLQAAN 942

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
             GK +                           ++      P  +  + + +         
Sbjct: 943  AGKPMLISAQGEAIAPPEGFFIGEHAAAYGDAVVGEAWQTPITQTDAAVELP-------- 994

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
                            +  ++   +     S L  +     + Q A              
Sbjct: 995  ------WPATLSDAVHEQLSRGIDVIAADSSSLEQRQDAGPLLQRAQLLVDDADLMADAA 1048

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
            +    +  +   A R L       G     +L+ R     +   +L + +      R   
Sbjct: 1049 SGQSLDEAVKAKAQRIL-----AAGRQNVTSLQARVGGMSEREERLYWRSIIRPIPRISS 1103

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                          +       P         +       +     +    L      E 
Sbjct: 1104 PAAEAGTQFHAWAEQFIN-AGKPDEAVLAYEAESSMPHTGQDAVFVSREAMLADLAERER 1162

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
              ++ +   P +     Q   S     +              K+        E   +   
Sbjct: 1163 QCRKPSTRQPAVPQSTAQQSASAASAVSAASISSDNATE--SKLVAWQRRLAESSWAKRI 1220

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLK------SGFVDITDYKTGDNPKKETAQKLI 933
              +      + +  +G+ + G  D + +        +    + D+KTG  P K       
Sbjct: 1221 PAWTERAIVVDVPGVGL-VNGKLDAVFIGGLDPSSTTVRFTVVDWKTGRRPTKPDDITRK 1279

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
              QL +    L A    ++D    A L+Y+ 
Sbjct: 1280 LAQLDMYRLLLAAVEGVELDSID-ATLYYVS 1309


>gi|183601527|ref|ZP_02962897.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241190974|ref|YP_002968368.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196380|ref|YP_002969935.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219133|gb|EDT89774.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249366|gb|ACS46306.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250934|gb|ACS47873.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793963|gb|ADG33498.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 939

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 79/688 (11%), Positives = 175/688 (25%), Gaps = 79/688 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + V     T +A  E+R     + G  +  +  + +           D            
Sbjct: 96  SQVLAITFTNKAAAEMRERLGALIGGVADRM-WVSTFHSACVRILRRDGEQIG--LKSGF 152

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK-NLADIIDIIETEE 163
            I    +  RLI +        IK   P S L+      N +  A   LA      +   
Sbjct: 153 TIYDTADCERLIKLVCADFNIDIKRFTPRSILARISDYKNQLTDASTALAQYAPDFKP-G 211

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
            +      + + +             +    +  RL   NA       +  +        
Sbjct: 212 MRHYSFGQIGDPEPV---------YAVVYAEYQYRLALANAVDFDDLIVRTVELLRTQPH 262

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I++     +  A   L+  +A          G+D H P+    T   KS
Sbjct: 263 VAEYYRHKFRYILVDEYQDTNHAQYVLVRELA----------GVDAHEPSDPMATEAGKS 312

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                +    S    Y+        +I+  +       +  +              +   
Sbjct: 313 GPAWVTVVGDSDQSIYAFRGADIR-NIQDFEKDFPDARTIMLEQNYRSTQTILDAANAVI 371

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395
             N+     K+         +    AD  + EA  IA  +    +E        A++   
Sbjct: 372 AHNSARKPKKLWTALGEGDKIIGYAADTAQLEAHWIAQQILHLHEEKGLPYSDMAIMYRA 431

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L +  I   +  G             + L AI    D + +  ++  P  
Sbjct: 432 NAQSRSLEEGLIQAHIPYQLIGGTKFYERREVKDAIAYLQAIVNPADDINMRRILNVPKR 491

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G   +                                                  + E
Sbjct: 492 GLGTRAESQLTLFANEHNQTF----------------------------------WWAIE 517

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             E    +       +       T+  +  G    S  +++    L+   + E  +    
Sbjct: 518 QLEDIEGMSARTANAVRAFRELMTSLRTFAGEHD-SKPSEIVAQVLEQSHMLELLRKSED 576

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKAN--AIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
             +E      S    +         +     +++    + D + +  +   S  + ++  
Sbjct: 577 PQDESRVENLSQLQSVAAEFEQNTPDTTLAGFLETTALVADSDQLPGEGHDSGKVTLMTL 636

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L +  + L G+ +G +P + A         +  L      +   +          
Sbjct: 637 HTAKGLEYPIVFLTGMEQGTFPHSRAMENMDELSEERRLAYVGITRAKRRLYLTRAA--- 693

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLV 721
                  R+        + S++L  +  
Sbjct: 694 ------VRAQWGRQSEMMPSQFLDEIPD 715


>gi|326423891|ref|NP_760677.2| exodeoxyribonuclease V subunit beta [Vibrio vulnificus CMCP6]
 gi|319999264|gb|AAO10204.2| exodeoxyribonuclease V, beta subunit [Vibrio vulnificus CMCP6]
          Length = 1221

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 100/955 (10%), Positives = 225/955 (23%), Gaps = 120/955 (12%)

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
              +  W              +  +     A           + + I+        L A  
Sbjct: 284  ETVNRWAESETFDYHYPDKLAKFAQSELLAKTAKGTAPTHPLFEQIDAFLANPASLKAPL 343

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII-- 231
                           K   +  +           +    A +  +   L+      +   
Sbjct: 344  LAHAIEQCRAWLAKAKEQKQRLS-------FDDLLTRLSAAIDQDEAQLLASRIRTLYPV 396

Query: 232  --IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK------------ 277
              I     + P    + S +        +    D       +                  
Sbjct: 397  AMIDEFQDTDPLQYSIFSRIYLEHPQTGLFMIGDPKQAIYGFRGADIFTYIKARNQVSAH 456

Query: 278  --STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                    S+            +        ++      N S +   R   ++    P  
Sbjct: 457  YTLGTNWRSSAEMVAAVNQIFQQPDSPFIYDQDIPFLPVNASPKAEQRIWNMAGQKQPAL 516

Query: 336  TSDMRNTDILENKIPNIQKCFSD-----VALIEADNEREEAISIAIALRMSLDENKKKSA 390
            T  ++  +         Q+  +D     +  I   +++ +A                  A
Sbjct: 517  TYWLQECEEKPVAKGEYQQVMADATASQIQRILTLSQQGQASF--QQGERQHPIQAGDIA 574

Query: 391  LITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            ++    +  R +K  L + GI  + +S    +  +  +  +  +L A+    D  A+   
Sbjct: 575  VLVRTGSEGRLIKQTLAKQGIASVYLSNRDSVFLSPVAQDVQRILQAVLTSEDDRALRAA 634

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
            +   L                        N     + + K      ++            
Sbjct: 635  LACELFALDAASLDKL---------NNDENAWEKALSEFKEYRKLWLSRGVMPMLRAVMA 685

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
             R   E           +   +      +   N    +  +  W   +++   N      
Sbjct: 686  KRHIAERLLTQQEGERTLTDLMHLAELLQQASNEIDSDHGLLRWFAQSISDAHNGIGGSD 745

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
             ++  L  E     +       I     ++ + +    +       E      +   T+ 
Sbjct: 746  EQIQRLESERNLVQIV-----TIHKSKGLEYDLVFLPFVFAHREASEAKFYDAQTDRTVL 800

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVMQSDLNLKTAEKYIGQAAHD 687
             +   ++ L   D   L      ++   T      F+      +         + ++A  
Sbjct: 801  DITGSDAALQQADKERLAEDLRLIYVALTRAVYGCFIGAAPLRNGRSTKEPTGVHRSAMG 860

Query: 688  FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
            + + NG    I T         T +   +         +       R Q        L  
Sbjct: 861  YLVQNGQEGGIATLQQALAGQQTQSDSIVVTSPPTLPDE-------RYQPIAAPALALSA 913

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYS--FSEIKQLINDPYAVYARRILKLDFIPHFKKD--- 802
                    R           +  S        L    + + +        +   +K    
Sbjct: 914  QELATPIDRLWRITSYSGLVKQGSHQSDYDASLEVVGFDIDSSAEDPQAPVQEVEKSIFT 973

Query: 803  -PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
             P     GT  H++  E+   +   +                 +      ID+ W  +  
Sbjct: 974  FPRGASAGTFLHSLFEEVEFTQAADSEQN---------RQVISELMEKNLIDLEWLPVLQ 1024

Query: 862  KISHSFL------EHEEKIQSSIEKIFVNIPAKMAIE----------------------S 893
            ++  + L      +H    Q +  +  V +   + IE                       
Sbjct: 1025 QLVDTVLSTPLDGKHLYLNQKTPSQRLVEMEFLLPIEVLSAASLNQVIQRHDPLSARAGD 1084

Query: 894  IGIH-----LTGFADRIDLLKSGFVDITDYKT-----------GDNPKKETAQKLIDPQL 937
            +G       L GF D +   + G   + D+K+           G+  +        D Q 
Sbjct: 1085 LGFQTVQGMLKGFIDLVFEHQ-GKYYVLDWKSNHLGDAVHLYHGEALQGAMVDHRYDLQY 1143

Query: 938  SLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
             + A AL     S++           ++Y+ L+             K S D L+E
Sbjct: 1144 QIYALALHRFLRSRLANYDYQLHFGGVYYLFLRGMDGESEHGIFSAKPSLDLLTE 1198


>gi|285019926|ref|YP_003377637.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283475144|emb|CBA17643.1| probable atp-dependent dna helicase protein [Xanthomonas
           albilineans]
          Length = 658

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/712 (8%), Positives = 161/712 (22%), Gaps = 126/712 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T ++ +E+R    +    ++     I +   +  +    +             
Sbjct: 50  RIAAITFTNKSAKEMRERVAKRIRNEAADGLTICTFHALGLKFLQIEHAAV--------G 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R   +            D    +    P + P +         ++ ++I   +     
Sbjct: 102 LKRGFSIFD--------ADDAAAQIKDLMPGAKPDAV-------DDVKNLISRAKNAGLS 146

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E   A                       +  RL   NA          ++    +    
Sbjct: 147 PEQAMAAARSNREQDAAS-------LYARYQARLSTFNAVDFDDLIRLPVQVLESNEDIV 199

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +   G +++  S  +  A  RL+  +A        +   D       W     ++  
Sbjct: 200 MAWRERIGYLLVDESQDTNDAQYRLLKMLAGPRGNFTCV--GDDDQSIYAWRGANPENLM 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL                            ++     +     
Sbjct: 258 QM-----GRDYPTLQIIKL---------------------EQNYRCSNRVLRAANALIAH 291

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLDENKKKSALITADRN 397
           N       + + Q     + + E  +   EA  +A  +     +         ++     
Sbjct: 292 NPHEHLKTLWSDQADGERIRVWECRDSDHEAEKVAAEIAYLGTAKQVPWSDFCILFRGNF 351

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    +   I+ G           + + L  +   +D  A    V+ P    
Sbjct: 352 QSRPLEKALQMAAVPYHITGGTAFLERQEVKDVLAWLRLLVNPDDDAAFLRAVQAP---- 407

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                          + +    +A         H     +    
Sbjct: 408 ------------------------------KREVGATSLAKLAELAAAKHLPMSRAAASV 437

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L       ++  V       +    +S +D  +        +    ++      F
Sbjct: 438 GALQQLPPRAANGLSDFVDILHELRAASATVSSADVVRQLAEQSGLIRELRNQCKDEASF 497

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +     L  L                     +   +   +   K +  + + ++    S+
Sbjct: 498 QRRRGNLEELAKWFESGPRGASVGD------LAAQLALLSRNDKDDGGNQVRMMTMHASK 551

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696
            L F  + + G           ++  L   +  +      E+        +      +  
Sbjct: 552 GLEFRYVFIVGC----------EDGVLPHEVSLEEGNLQEER-----RLLYVGITRAKEQ 596

Query: 697 LIYTRSLRENNIP----TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           L  + S+             SR+   +          +         +    
Sbjct: 597 LWMSYSMLTRKFGEHIRLKPSRFFDEIPAEEMQRDGADPVADAARKKERANA 648


>gi|254821705|ref|ZP_05226706.1| hypothetical protein MintA_17347 [Mycobacterium intracellulare ATCC
           13950]
          Length = 595

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/566 (9%), Positives = 135/566 (23%), Gaps = 80/566 (14%)

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
           + D IA             +           L  H+   +  LV            +  +
Sbjct: 20  LADAIADPGPAGSYSAAGYQRITALGAELSALRAHLGHPLADLVAEVRRVLGVDCEVRAA 79

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                     +++              +   T      ++  + +      + ++D    
Sbjct: 80  AGVAAGWAGTEHLDAFADVVAGYAERADGAAT------RLDASATASVGALLGFLDAAEA 133

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV---- 667
           + +G    P       + +L    ++ L +  + +  L+ G +P   +++ +L+      
Sbjct: 134 VENGLAPAPLAVARDRVQVLTVHSAKGLEWQVVAVAHLSGGTFPSTASRSTWLTDAAELP 193

Query: 668 --------------------------------MQSDLNLKTAEKYIGQAAHDFEMANGTR 695
                                           +          +   +    +       
Sbjct: 194 PLLRGDRAAAGALGIPVLDTSDVTNRKQLSDKISEHRRQLDQRRVDEERRLLYVAITRAE 253

Query: 696 HLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             +             P   S +L  +  +               +   +          
Sbjct: 254 DTLLVSGHHWGATGVKPRGPSDFLVEIKDVIDRAAVAGDPCGTVEHWAPSPADGERNPLR 313

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                  +P      R         L+    A    R            D    +R  L 
Sbjct: 314 DNVIEAVWPADPLAVRREEVERGATLVRRALAAGPGRPCADVDGWAADVDALLAERARLI 373

Query: 813 HNIITELIKKR-------INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF----- 860
              + EL  +        + ++       ++  + S  +   L  +    W   F     
Sbjct: 374 EPPVRELPGQLSVSSLVGLARDPAGTAQRLRHRLPSRPDPHALLGNAFHSWVQKFYGAEC 433

Query: 861 ------------------HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                              +++       E   ++   + V +P +M I      + G  
Sbjct: 434 LFDLGDLPGAADSDVGDSAELAALQAAFTESPWAARSPVAVEVPFEMPIGET--LVRGRI 491

Query: 903 DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
           D +     G   + D+KTG+ P    A +    QL++   A    + + +    V   FY
Sbjct: 492 DAVFADPDGGATVVDWKTGEPPHGAEALRQAAVQLAVYRMAWA--ALAGVAESSVRTAFY 549

Query: 963 IRLKQKFKIDCITNDKKKYSADELSE 988
             ++    +           A  L +
Sbjct: 550 Y-VRAGTTVVPDELPSAAELAGLLID 574


>gi|222054488|ref|YP_002536850.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. FRC-32]
 gi|221563777|gb|ACM19749.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. FRC-32]
          Length = 1083

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 110/1067 (10%), Positives = 245/1067 (22%), Gaps = 144/1067 (13%)

Query: 46   SVTIYVPTKRAIQELRSEFIEIT------------------------------------G 69
             + +   T+ A +ELR    +                                       
Sbjct: 46   QILVVTFTEAATKELRERIRKRLTEAAEAFGQGTSTDSFLMCLIGRITDRSAAGQALTNA 105

Query: 70   KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129
             +S     I ++    +     +   S +L            L ++   +          
Sbjct: 106  LRSFDEAAIFTIHGFCQRMLQENPFESGSLYDTELVTDERPVLRQIAADYWRTHCYNAPP 165

Query: 130  LYPESPLSLPISPANAIWLAKNLADI-IDIIETEEKKWEDLHALKNEKYGMWWLLAAD-- 186
                + +   ++P   + LA   A   +  I  E +         +  +   WLLA    
Sbjct: 166  ALARTAIEAGLTPEALLELASRHAGNPLVRILPEPQAMVITQGGVDCDHAEKWLLALKRG 225

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM---------KGTKGPIIIAGSTG 237
            F    +    +R       +   +Q  L+   A             +      +I     
Sbjct: 226  FFDYLAAELPKR---KGKKNIRFFQDLLLDLHAAVQTTDCSLAPMIREHYRAALIDEFQD 282

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            + P   R+   +    +        D       +         + ++ +    H      
Sbjct: 283  TDPIQFRIFDRIYPAGDTTPFFLIGDPKQAIYSFRGADIF-AYLDAAKSPLVGHSLGENW 341

Query: 298  KLLDFL----------DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
            +    L                ++ +         R   +       D +  R       
Sbjct: 342  RSEPRLIQAVNGLFSSRTAPFGMEEIQFHQVTPAERERELLTLDGREDAAPFRFWFAGRR 401

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITADRNLARRV 402
            +            ++      E +  +       L    +       A++      AR V
Sbjct: 402  ETGKPINKGDAWQMLTDAVAGEISQLLHDGAEGRLCIGNRPIAPGDIAVLVRANRQARLV 461

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
            +  L+R GI   + +   L  +  +  +   L A+    +   +   +   L      + 
Sbjct: 462  QRALSRLGIPSVVCSAGNLFESAEAREVLHFLAAVADPANERQVRAALVTDLLGLSGDD- 520

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                A    E              D          T                   +    
Sbjct: 521  --LAAIGENEPRWEAVLAEFSSYHD--QWQTGGCMTMAMGFMAARQVRSRILALSDGRRR 576

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            L + +  C   +  +        G   +  W        +    +EH        +    
Sbjct: 577  LTNVL-HCFEAV--HGAAVLHRLGMEGVVSWLA--ERIGEKEQREEHEIRLETDSDAVQL 631

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
                    +         N  E+        +        ++  T+ +            
Sbjct: 632  VTIHKSKGLEYQVVFCPFNWAEYGRR-----EKTVTFHGDDRLPTIDMGSPELEVNRQR- 685

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
                    E +          ++R          A K  G +A  + +           +
Sbjct: 686  -----AAREAMAENLRLLYVAVTRARHRCYLAWGAFKDAGNSALHYLLHPQAT----ANN 736

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG--QCYLDWTRKLDYTTKQPHYKRPKPF 760
             + +         L R+              +G  Q Y     + +    +    R    
Sbjct: 737  GQVSLTDEEILADLHRIAGNAAGSIAIEAPFQGTPQPYPAKAPQPEKCVCRTFTGRIDRD 796

Query: 761  PPLEAQPRTYSFSEIKQLIND-PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
              + +     S +       + P    A      D+            RGT       E+
Sbjct: 797  WRVTSFTSFSSSTRHGAHAAELPDRDAAALAKGEDYSDLPASGIFAFPRGTAAGIFFHEI 856

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHI----DIIWRHLFHKISHSFLEHEEKIQ 875
             +     +      L++ ++  H         +      + +      + SF   E    
Sbjct: 857  FENLDFTDFATAPGLVEALLKKHGFAGQWLETVLSMTRNVIQTRLTTDAGSFTLSEIGPD 916

Query: 876  SSIEKIFV-----------------------------NIPAKMAIESIGIHLTGFADRID 906
              + ++                                + AK++   +   L GF D + 
Sbjct: 917  RRLTELEFFFPLARISSDTFREAAASWNDAASELNLAELAAKLSFTPVRGMLRGFMDLVL 976

Query: 907  LLKSGFVDITDYKTGDNPKKET-----------AQKLIDPQLSLEAAALKAGSFSQID-- 953
                G   I D+K+     ++            A  L   Q  L   AL      ++   
Sbjct: 977  EHG-GRYHIIDWKSNHLGNRQENYGSGEMAREMADNLYHLQYLLYTVALHGYLQLRLADY 1035

Query: 954  --CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
               R    +FYI L+        +   +     +L ++  + L+E +
Sbjct: 1036 DYDRHFGGVFYIFLRGVGDESRDSGIFQARPPFQLIDRLSRLLVETL 1082


>gi|302877434|ref|YP_003845998.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
 gi|302580223|gb|ADL54234.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
          Length = 723

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/577 (9%), Positives = 140/577 (24%), Gaps = 101/577 (17%)

Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM----- 223
           L A   E +  +     D        +  +             +      + +       
Sbjct: 163 LRAHDVEAFDPYTRRKVD----VYAEYDAQCQREGVVDFSELLLRCFELLSRNESLRTHY 218

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
           +     I++     + P   + +  +A   N   +    D       +      +     
Sbjct: 219 QERFHHILVDEFQDTNPLQYQWLKLLAGQHNA--LFAVGDDDQSIYAFRGANVGNMKDLL 276

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +              +  L+        + + +N +   +                  +
Sbjct: 277 RDFKVEA---------VIKLEQNYRSHGNILDAANALISNNR-----------------N 310

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARR 401
            L   +   ++    + + EA  + EEA  I   +R    E  K  + AL+      +R 
Sbjct: 311 RLGKNLWTSEQGGEKLRVYEAPTDVEEANFIVGEIRQLKTEGLKLTEMALLYRSNAQSRV 370

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           ++  L   G++  +  G+            + L  +   +D  A+  ++ +P        
Sbjct: 371 LEHALVSAGLSYRVYGGLRFFERQEIKHALAYLRLMQNTDDDNALLRIINYP-------- 422

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                                            R    ++   +            + A 
Sbjct: 423 --------------------------------TRGIGARSIEQIQDSAKMHGTTLWDAAA 450

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                +   +  +   ++  ++      +      +            +K       E  
Sbjct: 451 RAGGKVSAFVGLIEAMRSATSALPLPEIMEHVLVHSGLIEHYQSEKGAKKREAEERLENL 510

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
           K L +  +  +                +T            ++   L ++    ++ L F
Sbjct: 511 KELVTAATLFVHENED-----DSLTSFLTHASLEAGEHQAGDQDDALHLMTVHAAKGLEF 565

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
           + + + GL E         N F  +  Q        E+ +   A    +    R L  + 
Sbjct: 566 NAVFITGLEE---------NLFPHQNSQRVDGGLDEERRLMYVA----ITRARRRLYMSF 612

Query: 702 SLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
           + R            S +L+ L              R
Sbjct: 613 AQRRMLNGQVSYGAPSSFLKELPEDLLQWLSAREAPR 649


>gi|207723138|ref|YP_002253537.1| homologous recombinational repair protein, atp-dependent exodnase
            (exonuclease v) beta subunit (contains helicase and
            exonuclease domains) [Ralstonia solanacearum MolK2]
 gi|206588331|emb|CAQ35294.1| homologous recombinational repair protein, atp-dependent exodnase
            (exonuclease v) beta subunit (contains helicase and
            exonuclease domains) [Ralstonia solanacearum MolK2]
          Length = 1177

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 81/779 (10%), Positives = 187/779 (24%), Gaps = 72/779 (9%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGS 238
              D L    + +  +   ++ +        LMR     A  +  +      +++     +
Sbjct: 364  LGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQVRLDARYKHLLLDEFQDT 423

Query: 239  IPATARLMSTVANHPNGA----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS----- 289
             P   R++        G      V    D       +     +  +              
Sbjct: 424  NPMQWRILQGWLRGYEGTGTRPTVFLVGDPKQSIYRFRRADARLFDAARDMLVAGFDATV 483

Query: 290  ---THPQYSLAKLLDFLDIKREDVKRLGN-------VSNEMYGRSMVISKSFLPPDTSDM 339
                  + +   +L++++      +  G+        +         +    +P   +  
Sbjct: 484  LRTNRTRRNAPAVLEWVNAVFLQARARGDYAIYAEQSTAVDAPAGQALLLPLVPVPEAVQ 543

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNERE---EAISIAIALRMSLDENKKKSA---LIT 393
                   + +   ++   D    +   +      A+     +R + DE   + +   L+ 
Sbjct: 544  TGETAPRDSLTEPREEAGDSQRYDEGRQVAACLRALQAGERVRENGDERPVRWSDFQLLV 603

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              +      +  L   G+         L  TL +  L +LL+ +      + +A +++ P
Sbjct: 604  RRKRYLADYERALRDAGVPYLSPRRGGLLATLEALDLCALLDFLMTPQADLPLAHVLRSP 663

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            +      +                G         L +L     A  +           L+
Sbjct: 664  IFAVTDDDLIALA-------QTGEGASAPTWWERLTALAGQPHAAAQLRHAHRLLSRWLA 716

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                     L+DHI+        Y           ++++        L         + P
Sbjct: 717  VAPTLPVHDLLDHIVYTGELKRRYAERVPEANREQALANLDAFLKLALDLDG----GRYP 772

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            +L              +       ++ +A E  D I   +  E           + IL  
Sbjct: 773  SLPKFMAELRAIRQGDEEESPDEGVQGDAAEAPDAIDAELASE-------GLDAVQILTV 825

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAK---NPFLSRVMQSDLNLKTAEKYIGQAAHDF-- 688
              S+ L    ++L   +      +TA    +        +  +        G+A      
Sbjct: 826  HASKGLEAPFVVLLDSHHSDTRADTAGILIDWLPGAEAPAHFSAFGKTAERGRARDPLFA 885

Query: 689  ---EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
                +A      +   ++       I S    +          +           W   L
Sbjct: 886  QEAALAERENWNLLYVAMTRARQALIVSGVANKRDGAAAQAVDEGDVPEVDGSASWYTLL 945

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND-----PYAVYARRILKLDFIPHFK 800
                        +     +A                          A R+          
Sbjct: 946  ATAGVASPAPAAQADAGGDAVHAGPQAVSYHDFRVPLTVTVRIGGTAERVADAPNAADAI 1005

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
             D     +G L H ++  L +    +  P+        I   F    +            
Sbjct: 1006 FDQGAVAQGELLHAVLERLTRHGKPEQVPDAAA-----IARWFGATGITDADAARAAEAV 1060

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
             ++  +         +  +     +         G  L    DR+       V + DYK
Sbjct: 1061 RRMLAAEALAHVFDAARFDVAHNEVEL---FSPDGALL--RIDRLIERGD-EVLVVDYK 1113


>gi|83309824|ref|YP_420088.1| superfamily I DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82944665|dbj|BAE49529.1| Superfamily I DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 864

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 77/753 (10%), Positives = 171/753 (22%), Gaps = 130/753 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLL-SYNLNPP 102
                  T RA +E++    ++ G       L    +   +      +         +  
Sbjct: 185 QCLAVTFTNRAAREMKERVGQLVGPVSDGIWL---GTFHSLCLRILRSHAEAVGLGGDFT 241

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           V +    + + + ++   +  P                           L   I   +  
Sbjct: 242 VLDSDDQMRVLKQVMAEAHVDPKGTPPQG--------------------LMATIQRWKDR 281

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RA 217
               +   A    +            K   + + +RL  LNA       + ++      A
Sbjct: 282 AVTPDKAAADGGAEGQA---------KTLYRAYQDRLRSLNACDFGDLLLHVLTVFLSDA 332

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           EA    +G    +++     +  A    +  +A        +   D       W      
Sbjct: 333 EALARWQGRFRYLLVDEYQDTNVAQYLWLRLLAQTHRNICCV--GDDDQSIYSWRGAEVG 390

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +      P   + +L          +     +     GR              
Sbjct: 391 NILRFEKDF-----PGAKVVRLESNYRSTPHILAAASTLIANNEGRLGKT---------- 435

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALITAD 395
                  L   I +  +    +      +   EA  +A  +       E     A++   
Sbjct: 436 -------LRPGIIHEPEAIEKIRTKAVWDGEAEARMVAEEIETLQRRGEKLSSMAILVRA 488

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
               R  +  L   GI   +  G      L      + L  +    D +A   +V  P  
Sbjct: 489 GFQTREFEERLITTGIPYRVIGGPRFYERLEIRDAMAYLRLVVSAADGLAFERVVNTPKR 548

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G             E V                                         
Sbjct: 549 GLGEAAVQTIHMVARAEQV----------------------------------------P 568

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             E A  LVD                       S+ +           +    +  +   
Sbjct: 569 LLEAARRLVDTDELKPKARQALARFIEDVDRWRSLLESMPHPELAATILDESGYVDMWKA 628

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
               +         +++        +   +++ +  +++ ++         ++ I+    
Sbjct: 629 DKSADAPGRVENLKELVAALEEYD-SLASFLEHVALVMENDS----RADLDSVVIMTLHG 683

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L FD++ L G  E V+P + A          ++   K  E+    A      A   +
Sbjct: 684 AKGLEFDSVFLPGWEEEVFPHSRA---------LAESGTKGLEEERRLAYVGLTRA--RK 732

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR--------KLDY 747
            ++ + +          S+   R +        +   +RG                    
Sbjct: 733 RVLVSFAANRRIYNQWKSQLPSRFVEELPESHVERSGERGLHGGGLAESKAAWNDPAWSR 792

Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
                  +     P         S    K    
Sbjct: 793 ARFGQPRRETAAAPSWGQAKPRESAGGFKPGAR 825


>gi|329945395|ref|ZP_08293158.1| putative ATP-dependent DNA helicase PcrA [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529017|gb|EGF55948.1| putative ATP-dependent DNA helicase PcrA [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 974

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 78/707 (11%), Positives = 188/707 (26%), Gaps = 94/707 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD-----VVEEKFTADLLLSYNL 99
             +     T +A  E+R     + G     +  + +        +  E   A L  ++++
Sbjct: 169 GEILAITFTNKAAAEMRERVTALVGPAGERM-WVSTFHSACVRILRREHEAAGLRSTFSI 227

Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
                +        RLI +   +L    K   P++              A  ++D+ + +
Sbjct: 228 YDAADS-------TRLITLIVRELGIDPKRFTPKT-------------FANRISDLKNEL 267

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM---- 215
                                       L    + + ERL   NA       +  +    
Sbjct: 268 ----ITPAQFAERAVTSNP-----LERHLAEVYRAYAERLSAANALDFDDIIMRTVTLLQ 318

Query: 216 -RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA---------IVLPGLDCH 265
            R     + +     I++     +  A   L+  +   P  +          +    D  
Sbjct: 319 TRPAVAEMYRRRFRHILVDEYQDTNHAQYVLVRELVGGPGTSGAGSALPPGELTVVGDSD 378

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +   T ++            +P      L       +  +     V +   GR  
Sbjct: 379 QSIYAFRGATIRNIEEFE-----EDYPAARTILLEQNYRSTQNILSAANAVISRNSGRR- 432

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                               E  +       + +    AD+E +EA  I+  +    DE+
Sbjct: 433 --------------------EKNLWTAAGDGAPITGYVADSEHDEARWISQEIDRLSDEH 472

Query: 386 K---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               +  A+       +R ++    R G    +  G             + L A+   +D
Sbjct: 473 GVHPRDIAVFYRTNAQSRALEEAFMRAGQPYKVIGGTRFYDRREIKDAIAYLRAVDNPDD 532

Query: 443 FMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
            + +  ++  P        E  L+       +   +   ++             +A + +
Sbjct: 533 DVNLRRILNVPKRGLGDKAEGALAEHAARYSVSFGQAVADAAGAPREAQADETGVAGEPD 592

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS-ISDWTKLTVTC 560
                  ++    E + L     + +      L T +    +  G    +      +   
Sbjct: 593 GLAPSVTEAGEPPEVEGLTTRARNQVRGFHELLTTLRHMVTAGDGVADILDSALDASGYL 652

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID-----G 615
            +    D+ +    +    E  +++S F      G+         +   +  +       
Sbjct: 653 AELRASDDPQDATRVENLAELHSVASDFQAANPDGTLADFLERVSLVADSDQLPPSADLE 712

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
           +    + E+   + ++    ++ L F  + + G+ +G +P   +         +  L   
Sbjct: 713 DEDARRAEEQGQITLMTVHTAKGLEFPIVFVTGMEDGTFPHTRSLAEETELAEERRLAYV 772

Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
              +   +                 RS         ASR+L  +   
Sbjct: 773 ALTRARERLYLTRAA---------VRSAWGAANAMPASRFLDDVPAE 810


>gi|325927578|ref|ZP_08188810.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Xanthomonas
           perforans 91-118]
 gi|325542043|gb|EGD13553.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Xanthomonas
           perforans 91-118]
          Length = 1137

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 108/957 (11%), Positives = 235/957 (24%), Gaps = 124/957 (12%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
            E  R  P  PLL   V + +P     + L+S      G  + +     + G+ V     
Sbjct: 26  QELRRPMPGQPLLQPEV-VLIPQVAMRRWLQSTLAAEHGVAANL--EFLTPGEFVARALE 82

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
            +L  + +     +   RL                    L P +             LA 
Sbjct: 83  RNLGAADDDLDMATTQWRL-------YAALQSDLGSDAALAPLAGYLSDGDALKPWALAG 135

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            LA + +  +   + W            + W   AD     ++ W               
Sbjct: 136 ELASVFEKYQAWRRDW-----------LLRWEAGADPDDPQARLWRSI--ATGRQYRARR 182

Query: 211 QIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
               +   A       +G    +         P   R+++T A        LP       
Sbjct: 183 IGQYLDRHARADGPLPQGLPPRVFAFAILNISPDVLRVLATQARVGTLHFYLPTPTQGYW 242

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
             +      +  +            Q     LL        D   L      ++  + + 
Sbjct: 243 GDLQTLWQRRREDGAVQLFAE----QVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEIA 298

Query: 328 SKSF------------------LPPDTSDMRNTDILENK--IPNIQKCFSDVALIEADNE 367
           + +                   L    SD+ +         +P +      + +      
Sbjct: 299 AYADPLDSGRRTLADGGLGDSLLRRMQSDLFHRRAPAAHAVLPAVNLHDPSLQVHACHTR 358

Query: 368 REEAISIAIALRMSLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDI 415
             E   +   LR  LD+         ++ A+++ + +        +         +   +
Sbjct: 359 LRELQVLHDQLRALLDDARFDPPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYAL 418

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY--------LSRA 467
           +   PL++   + +  +LL           I  L+                        A
Sbjct: 419 ADASPLASEPLAEVFLTLLGLPIARFGLHEILDLLASAPIAEAAGLDEAGLERLRSWLHA 478

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV-LLVDH 526
             A   +     +      D        +            +               +  
Sbjct: 479 AGARWGLDAAHRRQHQAPGDDAYTWRFALDRLLLGHASGADEDIDGVAPWPQLEGSALAA 538

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           +   +  L   + ++ +    ++  +W +  +  L+ +              +  + L  
Sbjct: 539 LDTLLRLLRVLERHQAALAEAMTPVEWRERLLGLLEALIPTTPTAPRAQRALDRLRALID 598

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            F++             E +      + GE+       +  +     +  RLL F  + L
Sbjct: 599 QFARDAIRAEYAGKVPAEVVRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRVICL 658

Query: 647 GGLNEGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
            G+N+G +P+             L    +   +  T E         F  A    +L Y 
Sbjct: 659 LGMNDGDFPRRDPAAGLNRLTAELGTERRRHGDRSTREDDRFLFLQLFASAQDVFYLSYL 718

Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFD------------------------------- 729
            +   +      S  +  LL                                        
Sbjct: 719 GADARDGSVREPSVLVSELLASAAQYHAASNALDTLVVRHPLQPFAAAAFGALGDESDAG 778

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS----EIKQLINDPYAV 785
              +R      W   +D    Q     P     L A+      S     +++L+ DP   
Sbjct: 779 ADPRRFSYRRQWRPAVDSLVGQRQPLAPWVAGALPAEGIALPASMSIDALRRLLTDPAGQ 838

Query: 786 YARRILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
           + R  L +       +D D        RG   + +  ++    +  +T  +   ++    
Sbjct: 839 FLRHRLGMRLPDPAGEDADLEPLLAPTRGLDQYGLQQQIFDAALAGDTEHLYARLRA--- 895

Query: 841 SHFEKENLPPHIDIIWR-HLFHKISHSFLEHEEKIQSSIEKIFV---NIPAKMAIES 893
                        +  R       + +F +   +  +   ++ V    I     +  
Sbjct: 896 RALLPSGPLGRRQLDERVAQLRPYADAFRQWRGESPAQSRRLQVQIDEIELHGRVPG 952


>gi|103485653|ref|YP_615214.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256]
 gi|98975730|gb|ABF51881.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256]
          Length = 1166

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 81/813 (9%), Positives = 183/813 (22%), Gaps = 89/813 (10%)

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHLMKGTKGP 229
                  A       ++ +     E   +                         +      
Sbjct: 344  ADELAAAWKLGSRFAEAYALAKREQGLADFDDLITLAGSLLRVSGFGEWVRFKLDQRTDH 403

Query: 230  IIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
            I++  +  +      ++ ++A         +      +    D       +     ++  
Sbjct: 404  ILVDEAQDTNMRQWGIVLSLAEEFFAVHGKDMDRARTLFTVGDRKQAIFGFQGTEPRAFV 463

Query: 281  ITSSNTTYST-----------------HPQYSLAKLLDFLDIKREDVKRLGNVSNEM-YG 322
                                            L     +L      +  L          
Sbjct: 464  AARDLFHALGERAGQDFEAVDLISNYRSTPAILEVADAWLAAGGTALMGLDGAEPPHVPH 523

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            R     +  L       +     E     +    +  A          A +IA  ++  +
Sbjct: 524  RRAHAGQVELWEPLPVGKALGATEEADEGVDDNGNATAPARDPASMRLAKAIAAEVQDWI 583

Query: 383  DE--------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                            L+   R+LA R+   L    + +       L+  L    L + +
Sbjct: 584  ANGKDGRPVAPGDVMILVRRRRDLAARIVARLQALHVPVAGVDRFALTQPLAVQDLMAAM 643

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                + +D + +A L+  PL  +   + Y          + +    +   +       L 
Sbjct: 644  RFAVQPHDDLNLAALLVSPLIGWTQDDLYDRTRGRGRTPIWMYLRAHQDMMPPATMATLR 703

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            +I    + T    +   L     +    L          L     +      N +++   
Sbjct: 704  QILGMADYTTPFRFLETLLSGPIDGRRKLYAR-------LGREARDPIDELLNQALAFEA 756

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            + TV+ L  +   E               +             +  +  + +     ++ 
Sbjct: 757  RKTVSLLGFLAEIEG----------SAADIKRQTEARGGVVRVMTVHGSKGLQAPIVILA 806

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              T               T++        +   G +E       A     +   +    L
Sbjct: 807  DATDDAAFGHRPF-----TVDVAAWEKLPVYAIGADERHGALADAYAKAKAAADEEHWRL 861

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
                    +          T      R++ E +     S  L RL            ++R
Sbjct: 862  FYVAMTRAEEILVVAGVTRTAE----RTVPEASWHAAVSGVLDRLGHDWEDGGAAWGRRR 917

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                            +   + P   P    +         + L              + 
Sbjct: 918  VHRVNAGRWAPQAKKAKTAARAPTRLPDWLHRTAPEETRPPRPLAPSTLG-----EDDVA 972

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
              P   +     +RG L H +   L     ++        +              P +D 
Sbjct: 973  APPQGGERGAAVERGLLLHALFERLPPVAPDRRRAAALRWL----------AVQAPALDE 1022

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914
              R        + L+               +P    ++ + +      DR+  +    V 
Sbjct: 1023 PARGAMVDEVLAVLDDPAHAPLFGPGSLAEVPLSAVVDGVVVAGI--VDRL-RVTDDAVT 1079

Query: 915  ITDYKTGD--NPKKETAQKLIDPQLSLEAAALK 945
            + D+KTG          Q     Q++    ALK
Sbjct: 1080 VIDFKTGRHLPGSAAEVQPAYLRQMAAYRDALK 1112


>gi|262280027|ref|ZP_06057812.1| superfamily I DNA and RNA helicase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260378|gb|EEY79111.1| superfamily I DNA and RNA helicase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 679

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 81/690 (11%), Positives = 181/690 (26%), Gaps = 114/690 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +T    T +A +E++    ++  ++ +    + +           +L    NL      
Sbjct: 53  RITAMTFTNKAAREMKERVSKLLSREESKGLSVSTFHTFGLNLLRLELK---NLP----- 104

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                    L   +     D  K +  +      +S A +  L   +A  +  I      
Sbjct: 105 ---------LKANFSILDADDCKRILMDLMHRDNLSGAESKEL---IAKAMKKIS----D 148

Query: 166 WEDLHALKNEKYGMWWLLAAD--FLKIASKYWTERLVELNASSPVGY-----QIALMRAE 218
           W++   L   +         +        + +   L   NA           ++    AE
Sbjct: 149 WKN--DLIVPEQAHSTCETPEDVQFAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAE 206

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +  A   L+  +             D       W     ++
Sbjct: 207 VRDKWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMG--QFTAVGDDDQSIYAWRGAKPEN 264

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
             +   +                                 ++       S+     +   
Sbjct: 265 MALLKQDFPN--------------------------LHIIKLEQNYRSTSRILKAANCVI 298

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITAD 395
             N  I + K+ + +     + +I   N+ +EA  +   L      N K     A++   
Sbjct: 299 QNNPHIFDKKLWSDKGHGEVIRIITCRNDDDEAERVVKDLLTHKLMNGKNWKDYAVLYRG 358

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              AR ++ +L +  I   +S G           + S L  I    D  A   ++  P  
Sbjct: 359 NFQARVLETQLRQMQIPYKLSGGTSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKR 418

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G          +    ++                +L   A Q+ +  +P        E
Sbjct: 419 AIGPVTLEKLGLFSQENNLS----------------LLGASADQRLSMVLPKKAETQLHE 462

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             +        +L+   P+   +   N       + +                 ++   L
Sbjct: 463 FADFIATFTRELLEDDEPVPKVRQMMNEAGYMDYVRE-----------QSATPAQEKSKL 511

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              E             E        ++    ++  L++ +    + E +  + +L    
Sbjct: 512 DNIENLFNSIQNLINRAEDVDEKNIESVIRKLVLLDLLEQQ---QEEEDTDKVNLLTLHA 568

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + + GL E + P   +                 AE    +    +      R
Sbjct: 569 AKGLEFPYVYIMGLEEELLPHKNSI---------------AAETIEEERRLMYVGITRAR 613

Query: 696 H-LIYTRSLRENNI----PTIASRWLQRLL 720
             L  T + +  N         SR+L  L 
Sbjct: 614 QGLTLTLAEQRKNGGQMRQMTPSRFLDELP 643


>gi|289573579|ref|ZP_06453806.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           K85]
 gi|289538010|gb|EFD42588.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           K85]
          Length = 694

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 79/681 (11%), Positives = 180/681 (26%), Gaps = 80/681 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R   + + G+K+  +  + +              L   LN   S
Sbjct: 68  GQILAITFTNKAAAEMRERVVGLVGEKARYM-WVSTFHSTCVRILRNQAALIEGLNSNFS 126

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+ +    L   IK   P                   LA+ I  ++ E  
Sbjct: 127 IYDADDS-RRLLQMVGRDLGLDIKRYSPRL-----------------LANAISNLKNELI 168

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                 A   E         A       +        L+    +G  +A+++A  +    
Sbjct: 169 DPHQALAGLTEDSDDLARAVASVYDEYQRRLRAA-NALDFDDLIGETVAVLQAFPQIAQY 227

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANH------PNGAIVLPGLDCHIPTAIWNTITE 276
            +     +++     +  A   L+  +         P G + +   D       +   T 
Sbjct: 228 YRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCV-VGDADQSIYAFRGATI 286

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++            +P      L       +  +    +V     GR             
Sbjct: 287 RNIEDFE-----RDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRR------------ 329

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALIT 393
                    E ++         +    ADNE +EA  +A    AL    +      A+  
Sbjct: 330 ---------EKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDVAVFY 380

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              N +R ++  L R GI   +  G+          + + L  +    D +++  ++  P
Sbjct: 381 RTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRILNTP 440

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G   +                   +        +   +      NT      +   
Sbjct: 441 RRGIGDRAEACVAVYAEN----------TGVGFGDALVAAAQGKVPMLNTRAEKAIAGFV 490

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           E   EL   L D + + +  ++     +     +    +  +L    L  +    H    
Sbjct: 491 EMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARL--DNLNELVSVAHEFST 548

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
           +                +      +    +    +    +  +  +     +  + ++  
Sbjct: 549 DRENAAA----------LGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTL 598

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + + G  +G++P   A +       +  L      +   +      +   
Sbjct: 599 HTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRS 658

Query: 694 TRHLIYTRSLRENNIPTIASR 714
           +     +   R     +  S 
Sbjct: 659 SWGRRCSTRSRGFCGKSRRSS 679


>gi|118576323|ref|YP_876066.1| superfamily I helicase [Cenarchaeum symbiosum A]
 gi|118194844|gb|ABK77762.1| superfamily I helicase [Cenarchaeum symbiosum A]
          Length = 916

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/551 (10%), Positives = 141/551 (25%), Gaps = 64/551 (11%)

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
            L           ++        +R  E   +      + +      +        +  G 
Sbjct: 388  LFYAFNCPGMDGEDAPLAEDLCARYKEIIGKEPRQFAEGLGSIHRRVGNML--AKTPSGY 445

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA-IEWI 606
            L      +     L  + L+      +L       T  S +  + +T           ++
Sbjct: 446  LPDMGLQEFFQRILNAMGLESGLLKKHLHDLGVLSTAISDYEYVYQTIRAWDVPGFRYFV 505

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
              + R +  + +   +     + ++   +++ L F  + +    +       +       
Sbjct: 506  KEVGRRVYPDRIYNSVSPVDAVRVMTIWKAKGLEFPAVFVPTFVKFRKIPLRSN---FLD 562

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
              + D  L T +K               R + YT   R      +     Q + V     
Sbjct: 563  PGEFDKGLYTGDKE------------SARRVYYTAVTRSQKYLFLTGATWQEIAVGKKPS 610

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                 K++     +    L   +     K        E      S+ E+      P+  +
Sbjct: 611  ---KGKRKHPFISEMGGHLSEPSDMVRAKSSHGPREPEDGVLVASYRELSTYGRCPHDFF 667

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNII----TELIKKRINKNTPEINHLMKQIIDSH 842
               +         +     +   T  HNI+     +  +     +  E+  ++ +     
Sbjct: 668  FENVAGFK-----RGILPASGYVTSMHNILGIIHEKYARSGKIPDPGELEAIIDETFHLR 722

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
            F    +   +         +      +  +        + V    ++ ++     +TG  
Sbjct: 723  FAPLPMLNGMKKKAVGRIRRYLDKHADEIQG------ILEVEKRFEVGMDKT--LVTGVI 774

Query: 903  D--RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
            D  RI     G  ++ D+           ++        E+   +   F      +    
Sbjct: 775  DLLRIHEGDDGRAEVADF-------ITEGERGY-----YESDHHERVKFGTYAALQT--- 819

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH---LRLSEK 1017
              + LK    I    +  +K    +  + S + L      +    Q           SE 
Sbjct: 820  --LGLKPGRSIIHYLDRDEK----DYVDISDEELKYAAHNVGLRAQGIHDRNFDATPSET 873

Query: 1018 SNIQSEYDHLA 1028
                 ++  + 
Sbjct: 874  KCRSCDFRAIC 884


>gi|224282901|ref|ZP_03646223.1| UvrD/REP helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140060|ref|ZP_07802253.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132570|gb|EFR50187.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum NCIMB
           41171]
          Length = 885

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 80/695 (11%), Positives = 180/695 (25%), Gaps = 85/695 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A  E+R     + G  +  +  + +           D   S  L    S
Sbjct: 64  SQILAITFTNKAAAEMRERLEGLIGPVAQRM-WVSTFHSACVRILRRDGQ-SIGLASGFS 121

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            I    +  RL+ +    L   +K   P + LS             +L    + ++    
Sbjct: 122 -IYDTADCERLVKLIGADLNIDLKRYTPRAILSRISDYK------NSLIGWQEQLKRYAP 174

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
            +      +       +        +    +  RL   NA          +         
Sbjct: 175 DY---RPGQRGYQIGNFGDIEVLYSVIYAEYQHRLAMANAVDFDDLIGRTVELLRTQPQV 231

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +  A   L+  +A       V+P                   
Sbjct: 232 ADYYRHKFRYILVDEYQDTNHAQYELIRELAGVDAAGQVVPD------------APSAGR 279

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
              +  T      Q   A     +   ++  +   N    M  ++   +++ L    + +
Sbjct: 280 AGPAWITVVGDSDQSIYAFRGADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAANAVI 339

Query: 340 RNTDILENK-IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395
            N    + K +         +    ADN  +EA  IA  +     E        A++   
Sbjct: 340 ANNQGRKPKKLWTALGIGDPIVGYAADNAEQEAAWIAGEIARVRAEEGTPYSDMAIMYRA 399

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L   G+   +  G             + L AI    D + +  ++  P  
Sbjct: 400 NAQSRALEGALVHAGLPYQLVGGTRFYERREVKDAIAYLQAIVNPADNVNMRRILNVP-- 457

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                     RA++ +   A       +D +D    +                  R    
Sbjct: 458 ----KRGLGPRAESIIVSYADAHATTFWDGIDHLDQIDGVPTRTGKQLAAFRDLMRSLSA 513

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                                           LS S   +                L  L
Sbjct: 514 FAAE----------------HDGKPSEVVGEVLSQSGLLEELQRSEDPQDASRVENLSQL 557

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                    ++             A    +++    + D + +  + E S  + ++    
Sbjct: 558 QSVAAEFEQNTP-----------DATLAGFLETTALVADSDQLPSEGEDSGKVTLMTLHT 606

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L +  + L G+ +G +P + A              ++ A++   +    +      +
Sbjct: 607 AKGLEYPVVFLTGMEQGTFPHSRA--------------MEDADELSEERRLAYVGITRAK 652

Query: 696 HLIY-----TRSLRENNIPTIASRWLQRLLVLGGT 725
             +Y      R+        + S++L  +      
Sbjct: 653 RRLYVTRAAVRAQWGQANEMMPSQFLDEIPDRLID 687


>gi|254478432|ref|ZP_05091809.1| recombination helicase AddA [Carboxydibrachium pacificum DSM 12653]
 gi|214035603|gb|EEB76300.1| recombination helicase AddA [Carboxydibrachium pacificum DSM 12653]
          Length = 1184

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 95/812 (11%), Positives = 212/812 (26%), Gaps = 99/812 (12%)

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            +     I I     S      ++S +A        +   D       +            
Sbjct: 360  REKFEEIFIDEYQDSSLIQEAILSLIARDNPPNRFM-VGDVKQSIYRFRQANPYIFFEKY 418

Query: 284  SNTTYST-------HPQYSLAKLLDFLD--IKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
            ++ +          +  +   K +      I  + + +     +      +    ++   
Sbjct: 419  TSYSQEGENKKILLYKNFRSRKEIIDAVNYIFEKIMSKNIGEVDYSEEEKLNYGANYESN 478

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---------- 384
                     +  + I   ++   +      D+ + EA  +   ++    E          
Sbjct: 479  PFEKENERTVEVHLIEREREEEFEEDEEILDDMQVEAHVVGERIKGLFREGFKVYDKEIG 538

Query: 385  -----NKKKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                   +   ++            E   + GI +          T     + SLL  I 
Sbjct: 539  GYRPVEYRDICVLLRATEKWAYAFEEEFVKMGIPVFADTNAGYFDTAEIKTMLSLLQVID 598

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                 + +  +++ P+  F   E    R ++A   +     K S    +L   V + + +
Sbjct: 599  NPMQDIPLLAVLRSPIFSFTEEELVDIRLEDADGTIYEALKKASLREDELGEKVRNFLDS 658

Query: 499  QKNNTH-----VPHWQSRLSEEDKE------LAVLLVDHILQCITPLVTYKTNKNSTC-G 546
             K                   E+             V+            K  + ++  G
Sbjct: 659  LKRWQEKSIYMPVDEFLWYLYEETGFYSYVGAMPQGVERQANLRVLFERAKEYEETSFKG 718

Query: 547  NLSISDWTKLTVTCLQNVCL----DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI---K 599
              +  ++     T   ++       E+  +  +    + K L      +   G       
Sbjct: 719  LFNFVNFINRLRTTSTDMGSAKTVGENENVVRVMSIHKSKGLEFPIVIVAGLGKQFNTKD 778

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLF-------ILGTLESRLLNFDTLILGGLNEG 652
             N          +        +     ++        I     S  +    + L    E 
Sbjct: 779  LNEKILYHHFLGIGPEFVDYRRRLSYPSIVKEAIKYKIKLESLSEEMRVLYVALTRAKEK 838

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKT-----AEKYIGQAAHDF--EMANGTRHLIYTRSLRE 705
            +    + K+            L        +    ++  D+        R L   R   E
Sbjct: 839  LILVASVKDIKERAKKWGKAKLLGKKISEYDVLKSRSYIDWIGSALIRHRDLKLLREFAE 898

Query: 706  NNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL--------DYTTKQPHYKR 756
             +      S   +  +        +  K  G   L+    L             +     
Sbjct: 899  ISPELEQDSSKWEVKIWNKRDVIVERKKDEGIEVLERLNALNLEGLHTEFRKEVEERLNY 958

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPY------AVYARRILKLDFIPHFKKDPDRTDRGT 810
              P+      P   S +EIK+++ND        +++ RR+LK       K+     +RG 
Sbjct: 959  VYPYDRSSKLPAKLSVTEIKRILNDEVIDEETTSIFERRVLKTPLFLEKKRGLTPAERGI 1018

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL-PPHIDIIWRHLFHKISHSFLE 869
              H ++ +L     + +       +K+ I    + E L       +  +   +    F  
Sbjct: 1019 AMHLVMQKL-----DLSKDLSYRGIKEQIKDMVKNEILTEEQAKEVDANKIERF---FKT 1070

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGI-------------HLTGFADRIDLLKSGFVDIT 916
               K     +++   +P  + I S  I              + G  D     + G + + 
Sbjct: 1071 PLGKRLLKAKEVRREVPFHIKISSREIYRDLPEVYQEEFIAVQGIIDCFFE-EEGELVLI 1129

Query: 917  DYKTGDNPKKE--TAQKLIDPQLSLEAAALKA 946
            DYKT      +    +     Q+ L   AL+ 
Sbjct: 1130 DYKTDYVENGKIEEIRDKYRVQIDLYGKALEE 1161


>gi|300704439|ref|YP_003746042.1| helicase, uvrd subfamily [Ralstonia solanacearum CFBP2957]
 gi|299072103|emb|CBJ43435.1| putative helicase, uvrD subfamily [Ralstonia solanacearum CFBP2957]
          Length = 1177

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 87/781 (11%), Positives = 185/781 (23%), Gaps = 76/781 (9%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGS 238
              D L    + +  +   ++ +        LMR     A  +  +      +++     +
Sbjct: 364  LGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQVRLDARYKHLLLDEFQDT 423

Query: 239  IPATARLMSTVANHPNGA----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             P   R++        G      V    D       +     +                 
Sbjct: 424  NPMQWRILQGWLRGYEGTGMRPTVFLVGDPKQSIYRFRRADARLFEAARDMLVAG--FDA 481

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            ++ +           ++ +  V  +   R      +             +L   +P  + 
Sbjct: 482  TVLRTNRTRRNAPAVLEWVNAVFLQARARGDYAIYAEQSTAVDAPAGQALLLPLVPVPEA 541

Query: 355  CFSDVALI--EADNEREEA------------------ISIAIALRMSLDENKKKSA---L 391
              +  A         REEA                  +     +R + DE   + +   L
Sbjct: 542  AQTGEAAPRDSLTEPREEAGDSQRYDEGCQVAACLRALHAGERVRENGDERPVRWSDFQL 601

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +   +      +  L   G+         L  TL +  L +LL+ +      + +A +++
Sbjct: 602  LVRRKRYLADYERALRDAGVPYLSPRRGGLLATLEALDLCALLDFLMTPQADLPLAHVLR 661

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             P+      +                G         L +L     A  +           
Sbjct: 662  SPIFAATDDDLIALA-------QTGEGASAPTWWARLTALASQPHAAARLRHAHRLLSRW 714

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            L+         L+DHI+        Y           ++++        L         +
Sbjct: 715  LAVAPTLPVHDLLDHIVYTGELKRRYAERVPDASREQALANLDAFLKLALDLDG----GR 770

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
             P+L              +       ++ +A E  D I   +  E           + IL
Sbjct: 771  YPSLPKFMTELRAIRQGDEEESPDEGVQGDAAETPDAIDAELASE-------GLDAVQIL 823

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAK---NPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
                S+ L    ++L   +      +TA    +        +  +        G+A    
Sbjct: 824  TVHASKGLEAPFVVLLDSHHSDTRADTAGILIDWLPGAEAPAHFSAFGKTAERGRARDPL 883

Query: 689  -----EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                  +A      +   ++       I S    +          +           W  
Sbjct: 884  FTQEAALAERENWNLLYVAMTRARQALIVSGVANKRDGAAAQAVDEGDVPEVDGSASWYT 943

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND-----PYAVYARRILKLDFIPH 798
             L            +     EA                          A R+        
Sbjct: 944  LLATAGVATPAPVAQAEAGGEAVHAGPRAVSYHDFREPLTVTVRIGGTAERVADAPNAAD 1003

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
               D     +G L H ++  L +    +  P+        I   F    +          
Sbjct: 1004 AIFDQGAVAQGELLHAVLERLTRHGKPEQVPDAAA-----IARWFGATGITDADAARAAE 1058

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                +  +         +  +     +         G  L    DR+ + + G V + DY
Sbjct: 1059 AVRCMLAAEALAHVFDAARFDVAHNEVEL---FSPDGALL--RIDRL-IERGGEVLVVDY 1112

Query: 919  K 919
            K
Sbjct: 1113 K 1113


>gi|320531567|ref|ZP_08032515.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136218|gb|EFW28218.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 692

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 76/717 (10%), Positives = 181/717 (25%), Gaps = 94/717 (13%)

Query: 35  RYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD-----VVEEKF 89
           R           +     T +A  E+R     + G     +  + +        +  E  
Sbjct: 24  RLIATGRARPGEILAITFTNKAAAEMRERVTALVGPAGERM-WVSTFHSACVRILRREHE 82

Query: 90  TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
            A L  ++++     +        RLI +   +L    K   P++              A
Sbjct: 83  AAGLRSTFSIYDAADS-------TRLITLIVRELGIDPKRFTPKT-------------FA 122

Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
             ++D+ + +                   +        L    + + ERL   NA     
Sbjct: 123 HRISDLKNEL----ITPAQFAERAVTSNPLECH-----LAEVYRAYAERLSAANALDFDD 173

Query: 210 YQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-------- 256
             +  +             +     I++     +  A   L+  +   P  +        
Sbjct: 174 IIMRTVALLQTRPAVAEMYRRRFRHILVDEYQDTNHAQYVLVRELVGGPGTSGAGSALPP 233

Query: 257 -IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +    D       +   T ++            +P      L       +  +     
Sbjct: 234 GELTVVGDSDQSIYAFRGATIRNIEEFE-----EDYPAARTILLEQNYRSTQNILSAANA 288

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
           V +   GR                      E  +       + +    AD+E +EA  I+
Sbjct: 289 VISRNSGRR---------------------EKNLWTAAGDGAPITGYVADSEHDEARWIS 327

Query: 376 ---IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                L        +  A+       +R ++    R G    +  G             +
Sbjct: 328 QEVDRLADEHGVRPRDVAVFYRTNAQSRALEEAFMRAGQPYKVIGGTRFYDRREIKDAIA 387

Query: 433 LLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            L A+   +D + +  ++  P        E  L+       +   +   ++         
Sbjct: 388 YLRAVDNPDDDVNLRRILNVPKRGLGDKAEGALAEHAARYAVSFGQAVADAAGAPREDQA 447

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS-I 550
                    +        +    E + L     + +      L T +    +  G    +
Sbjct: 448 NEPDGTEGADGQAPSSIGTSEPPEVEGLTTRARNQVRGFHELLTTLRHMVTAGDGVADVL 507

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
                 +    +    D+ +    +    E  +++S F      G+         +   +
Sbjct: 508 DSALDASGYLAELRASDDPQDATRVENLAELHSVASDFQAANPDGTLADFLERVSLVADS 567

Query: 611 RLID-----GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
             +       +    + E+   + ++    ++ L F  + + G+ +G +P   +      
Sbjct: 568 DQLPPSADLEDEDARQAEEQGQITLMTVHTAKGLEFPVVFVTGMEDGTFPHTRSLAEETE 627

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
              +  L      +   +                 RS         ASR+L  +   
Sbjct: 628 LAEERRLAYVALTRARERLYLTRAA---------VRSAWGAANAMPASRFLDDVPDE 675


>gi|20806785|ref|NP_621956.1| ATP-dependent exoDNAse beta subunit [Thermoanaerobacter tengcongensis
            MB4]
 gi|81590788|sp|Q8RCZ0|ADDA_THETN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|20515247|gb|AAM23560.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Thermoanaerobacter
            tengcongensis MB4]
          Length = 1204

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 95/812 (11%), Positives = 212/812 (26%), Gaps = 99/812 (12%)

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            +     I I     S      ++S +A        +   D       +            
Sbjct: 381  REKFEEIFIDEYQDSSLIQEAILSLIARDNPPNRFM-VGDVKQSIYRFRQANPYIFFEKY 439

Query: 284  SNTTYST-------HPQYSLAKLLDFLD--IKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
            ++ +          +  +   K +      I  + + +     +      +    ++   
Sbjct: 440  TSYSQEGENKKILLYKNFRSRKEIIDAVNYIFEKIMSKNIGEVDYSEEEKLNYGANYESN 499

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---------- 384
                     +  + I   ++   +      D+ + EA  +   ++    E          
Sbjct: 500  PFEKENERTVEVHLIEREREEEFEEDEEILDDMQVEAHVVGERIKGLFREGFKVYDKEIG 559

Query: 385  -----NKKKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                   +   ++            E   + GI +          T     + SLL  I 
Sbjct: 560  GYRPVEYRDICVLLRATEKWAYAFEEEFVKMGIPVFADTNAGYFDTAEIKTMLSLLQVID 619

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                 + +  +++ P+  F   E    R ++A   +     K S    +L   V + + +
Sbjct: 620  NPMQDIPLLAVLRSPIFSFTEEELVDIRLEDADGTIYEALKKASLREDELGEKVRNFLDS 679

Query: 499  QKNNTH-----VPHWQSRLSEEDKE------LAVLLVDHILQCITPLVTYKTNKNSTC-G 546
             K                   E+             V+            K  + ++  G
Sbjct: 680  LKRWQEKSIYMPVDEFLWYLYEETGFYSYVGAMPQGVERQANLRVLFERAKEYEETSFKG 739

Query: 547  NLSISDWTKLTVTCLQNVCL----DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI---K 599
              +  ++     T   ++       E+  +  +    + K L      +   G       
Sbjct: 740  LFNFVNFINRLRTTSTDMGSAKTVGENENVVRVMSIHKSKGLEFPIVIVAGLGKQFNTKD 799

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLF-------ILGTLESRLLNFDTLILGGLNEG 652
             N          +        +     ++        I     S  +    + L    E 
Sbjct: 800  LNEKILYHHFLGIGPEFVDYRRRLSYPSIVKEAIKYKIKLESLSEEMRVLYVALTRAKEK 859

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKT-----AEKYIGQAAHDF--EMANGTRHLIYTRSLRE 705
            +    + K+            L        +    ++  D+        R L   R   E
Sbjct: 860  LILVASVKDIKERAKKWGKAKLLGKKISEYDVLKSRSYIDWIGSALIRHRDLKLLREFAE 919

Query: 706  NNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL--------DYTTKQPHYKR 756
             +      S   +  +        +  K  G   L+    L             +     
Sbjct: 920  ISPELEQDSSKWEVKIWNKRDVIIERKKDEGIEVLERLNALNLEGLHTEFRKEVEERLNY 979

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPY------AVYARRILKLDFIPHFKKDPDRTDRGT 810
              P+      P   S +EIK+++ND        +++ RR+LK       K+     +RG 
Sbjct: 980  VYPYDRSSKLPAKLSVTEIKRILNDEVIDEETTSIFERRVLKTPLFLEKKRGLTPAERGI 1039

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL-PPHIDIIWRHLFHKISHSFLE 869
              H ++ +L     + +       +K+ I    + E L       +  +   +    F  
Sbjct: 1040 AMHLVMQKL-----DLSKDLSYRGIKEQIKDMVKNEILTEEQAKEVDANKIERF---FKT 1091

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGI-------------HLTGFADRIDLLKSGFVDIT 916
               K     +++   +P  + I S  I              + G  D     + G + + 
Sbjct: 1092 PLGKRLLKAKEVRREVPFHIKISSREIYRDLPEVYQEEFIAVQGIIDCFFE-EEGELVLI 1150

Query: 917  DYKTGDNPKKE--TAQKLIDPQLSLEAAALKA 946
            DYKT      +    +     Q+ L   AL+ 
Sbjct: 1151 DYKTDYVENGKIEEIRDKYRVQIDLYGKALEE 1182


>gi|294675594|ref|YP_003576209.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003]
 gi|294474414|gb|ADE83802.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003]
          Length = 1121

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 92/976 (9%), Positives = 220/976 (22%), Gaps = 101/976 (10%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P  P     + A     L         +    +        +    +LR         + 
Sbjct: 168  PDRPVLDLFLQAFTGADLTGMIAEISHDRDAFS-------HRLTEADLRKVLGLAPDLRP 220

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK---- 128
              LP    L         A + L    +  +  +   L L  L+      L  +      
Sbjct: 221  ETLPDAVFLPGTDR-VIAAAIPLLKTQSATMKTLAAQLSLLDLLAPGPADLARLADLCLV 279

Query: 129  -DLYPESPLSLPISPANAIW--LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
             D    S   L      A    LA+++ D+ + +    ++   L  L        +    
Sbjct: 280  KDGSRVSSRFLTKGAIEAFGPDLAEDVLDLAERVRWAREQENALATLNRTLALHDFARVL 339

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIA--LMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243
                   K     L   +     G  ++   +       + G    I++  +  + P   
Sbjct: 340  LPALALKKAQGGWLDFDDLIERAGALLSDPSVAQWVLFRLDGGIDHILVDEAQDTSPGQW 399

Query: 244  RLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTIT----EKSTNITSSNTTYSTH 291
            R++  +A+          +   +    D       +        E   ++ S+     + 
Sbjct: 400  RVIERLADEFTSGDGARDSRRTIFVVGDRKQSIYSFQGADLTHFEAMKSLFSAKFAAISR 459

Query: 292  PQ---YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
            P      L      L I R              G +                   + +  
Sbjct: 460  PLQDAALLHSFRSSLAILRLVDLTFRGDPALALGGAPEHLAFHDKLPGRVDLWPVVPKPD 519

Query: 349  IPNIQKCFSDVALIEADNEREEA-------------ISIAIALRMSLDE--NKKKSALIT 393
                ++    V    AD                     + +  R             L+ 
Sbjct: 520  KTEPEEWDDPVDRPGADTAPVVLARAIAAEIRAMVDAGVQLPGREGPRPVTAGDFLILVQ 579

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                L   + L     G+ +  +  + L   L    + S+L  +    D +++A  ++ P
Sbjct: 580  RRSGLFYEIILACKAQGLEVAGADRLKLGGELAVKDIVSVLAFLATPEDDLSLAEALRSP 639

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L  +   + +         L A                    +    +   +   +  L 
Sbjct: 640  LFGWSEDQLFRLAQPRKGYLWA-------------------ALREAGDEATLTVLRDLLD 680

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
              D      L++ +L              +       +   +                  
Sbjct: 681  RSDFLRPYDLIERLLTRHEGRKRLVARLGAEAEEGIDALIAQALAY---EQTEVPSLTGF 737

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
             +W   +   +             +  +  + ++    ++         ++   L   G 
Sbjct: 738  LVWLGADEIEIKRQSDSAGTALRVMTVHGSKGVEAPIVILPDTAKLRNSQRGELLLAEGI 797

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
               +                          L  V+          +   +    +     
Sbjct: 798  PFWKSAAA---------------------TLPPVLAQAQAEVLERQRHERLRLLYVAMTR 836

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
                +   +  +      +   L    +        +        L    +  +     +
Sbjct: 837  AEKWLIVATAGDEEEGAESWHALVSGGMKSAGTETVSALSEPLQALGPVLRFSHGDWPEN 896

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                     +      ++   +  +     A+ A  +     +P    +       T   
Sbjct: 897  GTPVGAAEVVRIALPNWARERVLPVHKTAKALSASDLGGPKALPGETAELS-----TEAA 951

Query: 814  NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
             +    +   +       +     +  S     N     D I   L  +        E+ 
Sbjct: 952  MLRGRRLHLLLEHLPQAPSETWPDLAQSLLGFGNDRAFPDEIE-ALLTRALQVLTAVEKA 1010

Query: 874  IQSSIEKIFVNIPAKMAIES-IGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQ 930
                       +     +    G  L G  DR+ +     + + DYK+            
Sbjct: 1011 GFLG-PDTLAEVELTAELPELGGQRLHGIIDRLQIGPD-RIRVLDYKSNAIVPNTAAEVP 1068

Query: 931  KLIDPQLSLEAAALKA 946
              +  Q++   AAL+ 
Sbjct: 1069 LGLVRQMAAYRAALRQ 1084


>gi|85708412|ref|ZP_01039478.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. NAP1]
 gi|85689946|gb|EAQ29949.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. NAP1]
          Length = 818

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 78/812 (9%), Positives = 201/812 (24%), Gaps = 107/812 (13%)

Query: 194 YWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIPATARL 245
            W E                               + +  +   ++I  +  +  A   +
Sbjct: 8   RWEEAKAREGFLDFDDLIRKAATLLGKSEASDWIRYKLDRSFDHVLIDEAQDTNSAQWDI 67

Query: 246 MSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS-------SNTTYS 289
           +  +         A       +    D       +   +  +             +   +
Sbjct: 68  VFALIDDFFAGEGARGDRVRTIFTVGDYKQAIFGFQGTSPDNFERAKQKVKARIDDAKAN 127

Query: 290 THPQYSLAKLLDFLDIK-REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                   +L  + D+      +    V + +      +       + +   +       
Sbjct: 128 AGELRENRRLPTWNDLDLGRSYRTSLPVLDFVNRVIETLGYGAFGLNKAPADHVGADRPG 187

Query: 349 IPNIQKCFSDVALIEA---------DNEREEAISIAIALRMS---------------LDE 384
           +  +       A              ++   A  IA  +R                    
Sbjct: 188 LVALWDPVMGAADDPDEEDDRDWLPAHDTRLAEKIAEQVRRWVSEEEPFVLEKGKRRHAS 247

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                 L+   ++LA ++  +L   G+ +     + L   L    L + L    +  D +
Sbjct: 248 AGDIMVLVRRRKDLAAQIVAKLHAKGVAVAGVDRLRLGAPLVVKDLMAALRFAAQPLDDL 307

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
           ++A L+  PL  +   +      ++  + +     K+    ++     L  +  + +   
Sbjct: 308 SLANLLASPLIGWTQDDLLEYVPRDPGKRLWDHLRKHEAPRVEETITKLRELLARADFET 367

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                + L     +    L   +                   N  I +            
Sbjct: 368 PQTLLAWLLTGPWQARRALAARL---------------GREANDPIDELLNAAFAFEAAH 412

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                  +   WF+     L     +       +  +  + +     ++   T     + 
Sbjct: 413 TPSLAGFIE--WFDAGEGELKRDADEATGQVRVMTVHGSKGLQAPIVILADAT-GEPGQG 469

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
            +       + +       + L  L++                ++      +  +     
Sbjct: 470 GALELADDPIGNAGDGARKVPLPSLSKDERVGP----------VRLAEEKASVAQMQEHW 519

Query: 685 AHDFEMANGTRHLIYTRS-----LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
              +         ++          +   P   S + +   V       D++    + + 
Sbjct: 520 RLLYVAMTRAEEALFIGGSLGPRQAKKGEPHEDSWYARLAPVFDAPPQQDSIWGERREWG 579

Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                L  +         +P P    +P        K L        A      D     
Sbjct: 580 VRADPLVGSDTPAATTGTEPLPMWATKPIGPEPRPPKPLAPSS----AAEDQSADPPLAP 635

Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI---IDSHFEKENLPPHIDIIW 856
           +       RGTL H ++  L    + +        + +    +D    +E L   + ++ 
Sbjct: 636 EIAAIAARRGTLMHRLLERLPDLAVAEREAAARSWLARQAGDLDEKTREEILSSSLAVLV 695

Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
              F ++                     +P    ++  GI + G ADR+ + +       
Sbjct: 696 EPGFAEL-------------FSADALAEVPLAAQVD--GIVVAGTADRLHVTEEVVTV-V 739

Query: 917 DYKTGDNP--KKETAQKLIDPQLSLEAAALKA 946
           D+KT   P    +   +    Q++  A+AL+A
Sbjct: 740 DFKTTRRPPESLDDIPRATLRQMAAYASALEA 771


>gi|300173630|ref|YP_003772796.1| ATP-dependent DNA helicase PcrA [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888009|emb|CBL91977.1| ATP-dependent DNA helicase PcrA [Leuconostoc gasicomitatum LMG
           18811]
          Length = 747

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/623 (9%), Positives = 159/623 (25%), Gaps = 96/623 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R                   +  ++ E    D+ +S      V  
Sbjct: 56  RILAITFTNKAAKEMRER-----------------ISSLLSEDVARDIWVSTFHALAVRI 98

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  E   L   +        + L       L ++        + +  +I   + +  +
Sbjct: 99  LRRDGESIGLARNFTIIDTSAQRTLMKRVISDLNLNTDQYDP--RTILGMISNAKNDMLR 156

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
             D     +  +        + +      +   L    +       +  +          
Sbjct: 157 PNDYAKQADNAF-------QETVAEVYTAYQAELKRSQSVDFDDLIMLTIDLFQSSPEVL 209

Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
            +       + +     +  A   +++ +A       V+   D       W      +  
Sbjct: 210 ERYQKQFEYLHVDEYQDTNDAQYTIVNLLAKRSQNLAVV--GDADQSIYGWRGANMNNIL 267

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                               +  +              +     
Sbjct: 268 NFEKDYP--------------------------TAHTVMLEQNYRSTQNILDAANAVINH 301

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISI---AIALRMSLDENKKKSALITADRN 397
           N + +  ++         +    A  E +EA  I    + +R          A++     
Sbjct: 302 NNERVPKELWTQNGKGDKITYYRAQTEHDEANFILSNILKMRSESKMAYSDFAVLYRTNA 361

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R V+  L +  +   +  G           + S +N I   ++  A   +V  P    
Sbjct: 362 QSRNVEESLVKANMPYTMVGGHKFYERKEILDIMSYMNLITNPDNNAAFERVVNEP---- 417

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                         + +  L R+    N  +V +  +  S E  
Sbjct: 418 ---------------------------KRGIGATSLIRLRELANRLNVSYMTAIDSIELA 450

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL-DEHRKLPNLW 576
                           ++     ++       +++         Q +   ++      L 
Sbjct: 451 PEISTRAATKFLTFAEMMHELRQQSEFLNVTELAEMAMTKSGYRQMLAEKNDPDSQARLE 510

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             EE  ++++ F     +      + +   D +        +    E   ++ ++    +
Sbjct: 511 NLEEFLSVTTEFDGKYNSEDPEAVDPMT--DFLGSTALMSDLDDFEEGDGSVTLMTLHAA 568

Query: 637 RLLNFDTLILGGLNEGVWPKNTA 659
           + L F  + L G+ EG++P + +
Sbjct: 569 KGLEFPVVFLIGMEEGIFPLSRS 591


>gi|320155533|ref|YP_004187912.1| exodeoxyribonuclease V subunit beta RecB [Vibrio vulnificus MO6-24/O]
 gi|319930845|gb|ADV85709.1| exodeoxyribonuclease V beta chain RecB [Vibrio vulnificus MO6-24/O]
          Length = 1206

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 100/958 (10%), Positives = 228/958 (23%), Gaps = 120/958 (12%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
            E    +  W              +  +     A        +  + + I+        L 
Sbjct: 266  EWLETVSRWAESDTFDYHYPDKLAKFAQSELLAKTAKGTAPMHPLFEQIDAFLANPASLK 325

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
            A                 K   +  +           +    A +  +   L+      +
Sbjct: 326  APLLAHAIEQCRAWLAKAKEQKQRLS-------FDDLLTRLSAAIDQDEAQLLASRIRTL 378

Query: 231  I----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK--------- 277
                 I     + P    + S +        +    D       +               
Sbjct: 379  YPVAMIDEFQDTDPLQYSIFSRIYLDHPQTGLFMIGDPKQAIYGFRGADIFTYIKARNQV 438

Query: 278  -----STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
                       S+    +       +        ++      N S +   R   ++    
Sbjct: 439  SAHYTLGTNWRSSAEMVSAVNQIFQQPDSPFIYDQDIPFLPVNASPKADQRIWNMAGQKQ 498

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSD-----VALIEADNEREEAISIAIALRMSLDENKK 387
            P  T  ++  +         Q+  ++     +  I   +++ +A                
Sbjct: 499  PALTYWLQECEEKPVAKGEYQQVMAEATASQIQQILTLSQQGQASF--QQGEQQHAIQAG 556

Query: 388  KSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              A++    +  R +K  L + GI  + +S    +  +  +  +  +L A+    D  A+
Sbjct: 557  DIAVLVRTGSEGRLIKQTLAKQGIASVYLSNRDSVFLSPVAQDVQRILQAVLTSEDDRAL 616

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
               +   L                        N     + + K      ++         
Sbjct: 617  RAALACELFALDAASLDKL---------NNDENAWEKALSEFKEYRKLWLSRGVMPMLRA 667

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                R   E           +   +      +   N    +  +  W   +++   N   
Sbjct: 668  VMAKRHIAERLLTQQEGERTLTDLMHLAELLQQASNEIDSDHGLLRWFAQSISDAHNGIG 727

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                ++  L  E     +       I     ++ + +    +       E      +   
Sbjct: 728  GSDEQIQRLESERNLVQIV-----TIHKSKGLEYDLVFLPFVFAHREASEAKFYDAQTDR 782

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVMQSDLNLKTAEKYIGQA 684
            T+  +   ++ L   D   L      ++   T      F+      +         + ++
Sbjct: 783  TVLDITGSDAALQQADKERLAEDLRLIYVALTRAVYGCFIGAAPLRNGRSTKEPTGVHRS 842

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
            A  + + NG    I T         T +   +         +       R Q        
Sbjct: 843  AMGYLVQNGQEGGIATLQQALAGQQTQSDSIVVTSPPTLPDE-------RYQPIAAPALA 895

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYS--FSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
            L          R           +  S        L    + + +        +   +K 
Sbjct: 896  LSAQELATPIDRLWRITSYSGLVKQGSHQSDYDASLEVVGFDIDSSAEDPQAPVQEVEKS 955

Query: 803  ----PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
                P     GT  H++  E+   +   +                 +      ID+ W  
Sbjct: 956  IFTFPRGASAGTFLHSLFEEVEFTQAADSEQN---------RQVISELMEKNLIDLEWLP 1006

Query: 859  LFHKISHSFL------EHEEKIQSSIEKIFVNIPAKMAIE-------------------- 892
            +  ++  + L      +H    Q +  +  V +   + IE                    
Sbjct: 1007 VLQQLVDTVLSTPLDGKHLYLNQKTPSQRLVEMEFLLPIEVLSAASLNQVIQRHDPLSAR 1066

Query: 893  --SIGIH-----LTGFADRIDLLKSGFVDITDYKT-----------GDNPKKETAQKLID 934
               +G       L GF D +   + G   + D+K+           G+  +        D
Sbjct: 1067 AGDLGFQTVQGMLKGFIDLVFEHQ-GKYYVLDWKSNHLGDAVHLYHGEALQGAMVDHRYD 1125

Query: 935  PQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
             Q  + A AL     S++           ++Y+ L+             K S D L+E
Sbjct: 1126 LQYQIYALALHRFLRSRLANYDYQLHFGGVYYLFLRGMDGESEHGIFSAKPSLDLLTE 1183


>gi|317125678|ref|YP_004099790.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043]
 gi|315589766|gb|ADU49063.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043]
          Length = 1186

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 75/716 (10%), Positives = 187/716 (26%), Gaps = 84/716 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEIT---------------GKKSTILPIIKSLGDVVEEKFT 90
            V     T++A  EL     +                 G  + +L    ++       + 
Sbjct: 77  QVLGLTFTRKAAAELSQRIAKRLRGLVRAGVWSPPEDDGGGAEVLGGTPTVS--TYHSYA 134

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             L+  + L   +    R+L  A    +    +      +   +     +     + LA 
Sbjct: 135 GRLVREHALRLGIEPEFRVLTEAGAWQLAAEAVSRWDGPMDGVTKAESTV-IEAVMSLAG 193

Query: 151 NLADIIDIIETEEKKWE----DLHALKNEKYGMWWLLAADFLKIASKY---------WTE 197
            +A+ +          +     L  L +       + A + L +  +          +  
Sbjct: 194 EMAEHVRAPTEVTDHLDEVIAALELLPDGDGRGTLIPAKEMLGVLRERRAILPIVQAFVA 253

Query: 198 RLVELNASSPVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
              E  +           R          + +     +++     +  A   L+ ++ + 
Sbjct: 254 LKRERESLDFADQVALAARVAGSVPAVGAIERERFRAVLLDEFQDTSEAQLALLRSLFHD 313

Query: 253 PNGAIVLPGLDCHIPTAIW------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
            + A            +        +   +    +T+      +   +  A     L   
Sbjct: 314 ASDASDASDASDASDASDASDASDPSHAPDAPVALTAVGDPNQSIYGWRGASATTLLRFP 373

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPP--DTSDMRNTDILENKIPNIQKCFSDVALIEA 364
            E   R G         S    +  L     T+    T  ++   P        +++   
Sbjct: 374 AEFADRHGPADVLPLSTSWRNDELILAAANVTAAPLATAHVQPLRPRPGAGAGTISIARR 433

Query: 365 DNEREEAISIAIALRMSL-----DENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
           +  ++EA  +A  +             + +A++   R+    V   L   G+ +++    
Sbjct: 434 ETAQQEAEHVATWIAARWRSPSGRRTGRSAAVLCRRRSSFPLVMEALREAGLPVEVVGLG 493

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRG 478
            L +T   S L +LL  +        +  L+  P+ + G  +          L     R 
Sbjct: 494 GLLSTPEVSDLVALLWVVQDPTRGDQLMRLLTGPVVRLGAADLDAFWAWAKELHSRPWRP 553

Query: 479 NKNSYDIMDLKSLVLDRIATQK-----------------NNTHVPHWQSRLSEEDKELAV 521
                    +  +  D                       +++      +  S +   L  
Sbjct: 554 GHAGSAAQGVLPIERDGHDAGPFSGRPGHDLPDDSVRTSDDSVRTSDLAADSADGATLVE 613

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC---------LQNVCLDEHRKL 572
            L +            + +  +     S++D  +               +          
Sbjct: 614 ALDELPPAGWRGFRGSQLSDEARRRLQSLADVVRRLRGLTALPLVDMVAEAETAVGLDIE 673

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKAN--------AIEWIDIITRLIDGETVKPKIEK 624
                E    T         +  +    +         + W++       G         
Sbjct: 674 VLSRPEHTASTARVHLDAFADVAARYAMSSDRPTLAGFLAWLEAAREQERGLDAGTVESD 733

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
           S  + +L    ++ L +D + + GL EG +P +++ +      +    +  T  +Y
Sbjct: 734 SDAVQVLTVHAAKGLEWDVVAVPGLVEGAFPDHSSTSVAPLDPVGEAADADTPVEY 789



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 69/227 (30%), Gaps = 29/227 (12%)

Query: 708  IPTIASRWLQRLLVLGG--TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK--PFPPL 763
              +     L+    L G   +    L   G   L    + D        +  +     P+
Sbjct: 929  SASWPHDPLRHRRELLGTVPERLRALAAVGPPDLSRDARADDLRLLLAERALRGVRDEPV 988

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
               PR  S SE+     DP A   R    +   P          +GT FH  + E   + 
Sbjct: 989  VNVPRHLSASEVVAFARDPEAFALRLRRPMPEPPAV-----AARQGTAFHAWVEEHFSRA 1043

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
               +  ++     +   S  +                 ++  +FL  E   +       +
Sbjct: 1044 AIVDLWDLPGSADEEAGSDGD---------------LDRMRANFLASEWADR---VPEEI 1085

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
             +  +  ++  GI + G  D +     G   + D+KTG  P    A+
Sbjct: 1086 ELAIETMVD--GIAVRGRIDAVFPRDDGGWTVVDWKTGARPSGREAE 1130


>gi|227523030|ref|ZP_03953079.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290]
 gi|227089848|gb|EEI25160.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290]
          Length = 743

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/693 (8%), Positives = 178/693 (25%), Gaps = 120/693 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           ++     T +A +E+R    ++            + +   +       ++          
Sbjct: 56  NILAITFTNKAAREMRERVSKLLDESGDDVW---VSTFHALCVRILRRNIDQL------- 105

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               R   +A      R  +  ++++L  +     P +  ++I  AKN  D++       
Sbjct: 106 -GFNRAFTIAD-TSEQRTLVKRVLRELNIDPKRFDPRAVLSSISNAKN--DLL------- 154

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              +   A  +  +          +    + +   L +  +       +  +    +   
Sbjct: 155 -TPKAFKAQADSDFD-------QIVADVYERYQAELRQNESLDFDDLIMTTIELFDQFSD 206

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I +     +  A  RL++T+A       V+   D       W     ++
Sbjct: 207 VLSYYQDKFHYIHVDEYQDTNEAQYRLVNTLAKKSKNICVV--GDADQSIYGWRGANMQN 264

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +                                  +              +   
Sbjct: 265 ILDFKEDYPD--------------------------AHVTLLEQNYRSTKTVLDAANAVI 298

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITAD 395
             N +  +  +    +    ++      E +EA  +   ++  + + K+     A++   
Sbjct: 299 AHNLNRADKNLWTENEQGEKISYYRGQTENDEARYVVAKIQEEMGKPKRNYGSFAILYRT 358

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L +  I   +  G             + L  +    D M+   ++  P  
Sbjct: 359 NAQSRVIEETLLKANIPYTMVGGHKFYDRKEIRDALAYLTLLGNPRDSMSFERVINEPKR 418

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G       R              N +    L++     +A + ++             
Sbjct: 419 GIGETSLEKLRTFA-----------NDHGWSLLEASKNIDLANEISSRAKNS-------- 459

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                      I      +       ++        +    +            +    L
Sbjct: 460 -----------ISMFEQIISDVAKKLDTMTITELTEEILDKSGYLSTLKSSKSLQAQTRL 508

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              EE  +++  + +               ++ ++ L          E++S + ++    
Sbjct: 509 ENLEEFISVTQKYDQDNPDQVGQD----NLVNFLSDLALVSDQDDLDEETSEVTLMTMHA 564

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + + G+ EG++P + A               +   +   +    +      +
Sbjct: 565 AKGLEFPVVFIMGMEEGLFPLSRA--------------AQDESELQEERRLAYVGITRAK 610

Query: 696 H-LIYTRSLRE----NNIPTIASRWLQRLLVLG 723
             L  T +              SR++  +    
Sbjct: 611 EKLYLTNAYSRMLYGRRQNNPESRFVNEIKPEL 643


>gi|227512902|ref|ZP_03942951.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577]
 gi|227083902|gb|EEI19214.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577]
          Length = 743

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/693 (8%), Positives = 178/693 (25%), Gaps = 120/693 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           ++     T +A +E+R    ++            + +   +       ++          
Sbjct: 56  NILAITFTNKAAREMRERVSKLLDESGDDVW---VSTFHALCVRILRRNIDQL------- 105

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               R   +A      R  +  ++++L  +     P +  ++I  AKN  D++       
Sbjct: 106 -GFNRAFTIAD-TSEQRTLVKRVLRELNIDPKRFDPRAVLSSISNAKN--DLL------- 154

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              +   A  +  +          +    + +   L +  +       +  +    +   
Sbjct: 155 -TPKAFKAQADSDFD-------QIVADVYERYQAELRQNESLDFDDLIMTTIELFDQFPD 206

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I +     +  A  RL++T+A       V+   D       W     ++
Sbjct: 207 VLSYYQDKFHYIHVDEYQDTNEAQYRLVNTLAKKSKNICVV--GDADQSIYGWRGANMQN 264

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +                                  +              +   
Sbjct: 265 ILDFKEDYPD--------------------------AHVTLLEQNYRSTKTVLDAANAVI 298

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITAD 395
             N +  +  +    +    ++      E +EA  +   ++  + + K+     A++   
Sbjct: 299 AHNLNRADKNLWTENEQGEKISYYRGQTENDEARYVVAKIQEEMGKPKRNYGSFAILYRT 358

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L +  I   +  G             + L  +    D M+   ++  P  
Sbjct: 359 NAQSRVIEETLLKANIPYTMVGGHKFYDRKEIRDALAYLTLLGNPRDSMSFERVINEPKR 418

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G       R              N +    L++     +A + ++             
Sbjct: 419 GIGETSLEKLRTFA-----------NDHGWSLLEASKNIDLANEISSRAKNS-------- 459

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                      I      +       ++        +    +            +    L
Sbjct: 460 -----------ISMFEQIISDVAKKLDTMTITELTEEILDKSGYLSTLKSSKSLQAQTRL 508

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              EE  +++  + +               ++ ++ L          E++S + ++    
Sbjct: 509 ENLEEFISVTQKYDQDNPDQVGQD----NLVNFLSDLALVSDQDDLDEETSEVTLMTMHA 564

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + + G+ EG++P + A               +   +   +    +      +
Sbjct: 565 AKGLEFPVVFIMGMEEGLFPLSRA--------------AQDESELQEERRLAYVGITRAK 610

Query: 696 H-LIYTRSLRE----NNIPTIASRWLQRLLVLG 723
             L  T +              SR++  +    
Sbjct: 611 EKLYLTNAYSRMLYGRRQNNPESRFVNEIKPEL 643


>gi|229820063|ref|YP_002881589.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
 gi|229565976|gb|ACQ79827.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
          Length = 1110

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 70/792 (8%), Positives = 169/792 (21%), Gaps = 47/792 (5%)

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI----------- 257
               +   R +    ++     +++     + P    L   +A    G             
Sbjct: 339  ARDLLRTREDVRSSLQAAYPRLLLDEFQDTDPIQVELAVRIAAGAEGGAGDWHDVRVPPG 398

Query: 258  -VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
             +    D       +     ++     +          +       L         L   
Sbjct: 399  SLFVVGDPKQSIYRFRRADIRTFLDVRTWLGDVCSLTTNFRSAAPVLAWVNATFGELIQP 458

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA- 375
             +        +     P            +      +   + +   EA +     +  A 
Sbjct: 459  VDGAQPAYEPLDAVRPPVGVGPAVTVLGAQPHQDLPRASAALLREREAADVAAVLLRAAG 518

Query: 376  -------IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
                          +      A++   R     +   L   GI     +   + +     
Sbjct: 519  QGWTVHDPRGGEERELRWGDVAVLVPARTSLPFLVEALDAAGIPYRAESSSLVYSATEVR 578

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
             L +   AI    D  ++ T ++  +   G  +               R   + + +   
Sbjct: 579  ALMAAARAIADPGDQFSVVTALRSQVYGCGDDDL----------WSWKRDGGSFHLLAPA 628

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                 D    Q         +        E+   +         P       ++      
Sbjct: 629  DEDRADHPVAQGLAHLRTVHRWARWATPSEVLARVAADRRMFEVPADAPAHARDVWRRLR 688

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             + D  +                      E      + L    ++    +  +A + ++ 
Sbjct: 689  FVLDQARAWSEVSHGGLRAYLAWAARQADESSRVAEAILPETDVDAVRIMTIHAAKGLEF 748

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
               ++ G T + +      L +       +    ++                +    R++
Sbjct: 749  PLVVLSGLTSQQRRASGVRL-LWTDDGYAVRLRQSVQTNDFTAAAPLDEQMDDHERRRLL 807

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
                        +         A   R L              A+               
Sbjct: 808  YVGATRARDHLVVSLHRGPTAAATHARLLADAGGSGAGAHAFTAADDGAARPERAAAPAA 867

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
             +                              P +         +     + DP      
Sbjct: 868  PDHAAWAGRLEAARAASRRVATHSASGLEGTEPEVVFAHSATGRANAGDAVVDPGGGEGD 927

Query: 789  RILKLD--FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
             +                +   GT     +  +++    +        +   +++    E
Sbjct: 928  ALPGSAKGPRDLALPPWSKGRYGTAIGRAVHGVLQAVDLRVQLADAGELDAAVEAQARVE 987

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
             +    D     +   ++ S L       ++  + +        +E  G  L G  D + 
Sbjct: 988  GVLEFAD-----VVADLALSALASPLVQDAARREHWAET-FVATLEPDGRVLEGVVDLLV 1041

Query: 907  LLKSGFVDITDYKTGDNPKKETAQK--LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
                G V I DYKT   P+     +     PQL   A AL+           V     + 
Sbjct: 1042 RDADGAVTIVDYKTDAVPEAALGVRTEFYAPQLRAYARALRDAG------ADVRRAVLLF 1095

Query: 965  LKQKFKIDCITN 976
            L     ++    
Sbjct: 1096 LAPDGAVEREVT 1107


>gi|169796934|ref|YP_001714727.1| ATP-dependent DNA helicase [Acinetobacter baumannii AYE]
 gi|184157156|ref|YP_001845495.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii ACICU]
 gi|213156663|ref|YP_002318324.1| ATP-dependent DNA helicase [Acinetobacter baumannii AB0057]
 gi|215484396|ref|YP_002326627.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB307-0294]
 gi|239503180|ref|ZP_04662490.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB900]
 gi|260555776|ref|ZP_05827996.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ATCC 19606]
 gi|301348256|ref|ZP_07228997.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB056]
 gi|301512392|ref|ZP_07237629.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB058]
 gi|301597490|ref|ZP_07242498.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB059]
 gi|332853741|ref|ZP_08434953.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
           6013150]
 gi|332871139|ref|ZP_08439737.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
           6013113]
 gi|169149861|emb|CAM87752.1| ATP-dependent DNA helicase [Acinetobacter baumannii AYE]
 gi|183208750|gb|ACC56148.1| Superfamily I DNA and RNA helicase [Acinetobacter baumannii ACICU]
 gi|193076634|gb|ABO11317.2| ATP-dependent DNA helicase [Acinetobacter baumannii ATCC 17978]
 gi|213055823|gb|ACJ40725.1| ATP-dependent DNA helicase [Acinetobacter baumannii AB0057]
 gi|213987021|gb|ACJ57320.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB307-0294]
 gi|260410687|gb|EEX03985.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ATCC 19606]
 gi|322507053|gb|ADX02507.1| ATP-dependent DNA helicase [Acinetobacter baumannii 1656-2]
 gi|323516920|gb|ADX91301.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332728427|gb|EGJ59802.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
           6013150]
 gi|332731725|gb|EGJ63006.1| putative ATP-dependent DNA helicase Rep [Acinetobacter baumannii
           6013113]
          Length = 679

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 76/688 (11%), Positives = 177/688 (25%), Gaps = 110/688 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +T    T +A +E++    ++  ++      + +           +L  +  L    S 
Sbjct: 53  RITAMTFTNKAAREMKERVTKLLSREEAKGLSVSTFHTFGLNLLRLELK-NLPLKANFSI 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +      A         L         ES   +  +         +L  + +   +  + 
Sbjct: 112 LD-----ADDCKRILMDLMHRDNLSGAESKELIAKAMKKISDWKNDLI-LPEQAHSTCET 165

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY-----QIALMRAEAE 220
            ED+                       + +   L   NA           ++    AE  
Sbjct: 166 PEDVQ-----------------FAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVR 208

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     +  A   L+  +             D       W     ++  
Sbjct: 209 DKWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMG--QFTAVGDDDQSIYAWRGAKPENMA 266

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
           +   +                                 ++       S+     +     
Sbjct: 267 LLKQDFPN--------------------------LHIIKLEQNYRSTSRILKAANCVIQN 300

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRN 397
           N  I + K+ + +     + +I   N+ +EA  +   L      N K     A++     
Sbjct: 301 NPHIFDKKLWSDKGHGEVIRIITCRNDDDEAERVVKDLLTHKLMNGKNWKDYAVLYRGNF 360

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            AR ++ +L +  I   +S G           + S L  I    D  A   ++  P    
Sbjct: 361 QARVLETQLRQMQIPYKLSGGTSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAI 420

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G               ++                +L   + Q+ +  +P        E  
Sbjct: 421 GPVTLEKLGLFAQENNLS----------------LLGASSDQRLSMVLPKKAETQLHEFA 464

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +        +L+   P+   +   N               +  ++       ++   L  
Sbjct: 465 DFISTFTRELLEDDEPVPKVRQMMNE-----------AGYIDYIREQSATPAQEKSKLDN 513

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            E   +         E        ++    ++  +++ +    + E +  + +L    ++
Sbjct: 514 IENLFSSIQNLINRAEDVDEKNIESVIRKLVLLDMLEQQ---QEEEDTDKVNLLTLHAAK 570

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696
            L F  + + GL E + P   +                 AE    +    +      R  
Sbjct: 571 GLEFPYVYIMGLEEELLPHKNSI---------------AAETIEEERRLMYVGITRARQG 615

Query: 697 LIYTRSLRENNI----PTIASRWLQRLL 720
           L  T + +  N         SR+L  L 
Sbjct: 616 LTLTLAEQRKNGGQMKQMTPSRFLDELP 643


>gi|225619624|ref|YP_002720881.1| hypothetical protein BHWA1_00683 [Brachyspira hyodysenteriae WA1]
 gi|225214443|gb|ACN83177.1| hypothetical protein BHWA1_00683 [Brachyspira hyodysenteriae WA1]
          Length = 276

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 80/270 (29%), Gaps = 37/270 (13%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR-TDRGTLFHNIITELIKKRINK 826
            + +S   +   +  P       I         K+  +     G   H    E  ++R  +
Sbjct: 7    QRFSEYSMSTYLLCPRKYRYTYI--EKPFKKQKRSVNVYFIFGNAIHLACKEFYEQRAEE 64

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHI--DIIWRHLFHK---ISHSFLEHEEKIQSSIEKI 881
             T +    +  I  + +++  +          + L  +   +  +F     +      + 
Sbjct: 65   RTLDN---LYNIFRNVWKRSGIRAFFNSREEEKELGERGLYMLSNFFNSFGQKVPYKIES 121

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETAQKLIDPQLS 938
            ++    +         L G  DRIDL   G + I DYKT       +    +     QL 
Sbjct: 122  YMENRVR------DYILFGRIDRIDLSADGTLQIVDYKTTKYYDVGEDNEERDRKTIQLK 175

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
            L A  L           KV +  Y              +  K    E + +S+  L E  
Sbjct: 176  LYACIL------DGLKCKVTSGSYYH-----------FEDDKLDTIEFTPESINYLREWF 218

Query: 999  TLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
              + +  +   +  +   +     ++  L 
Sbjct: 219  DEIVDDIRYDRAFDKKVGRHCEFCDFFKLC 248


>gi|164658916|ref|XP_001730583.1| hypothetical protein MGL_2379 [Malassezia globosa CBS 7966]
 gi|159104479|gb|EDP43369.1| hypothetical protein MGL_2379 [Malassezia globosa CBS 7966]
          Length = 876

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 85/803 (10%), Positives = 204/803 (25%), Gaps = 91/803 (11%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           L               P+  +   +   T +A  E+RS    + G++ T + I+ +    
Sbjct: 36  LTTRVAWLVQGAPDRKPIPPSQCVVVTFTNKAAAEMRSRLQALIGEERTRMLILGTFHAT 95

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR---NKLPDIIKDLYPESPLSLPIS 141
                                + R   +A      R   +   D   D+  +     P +
Sbjct: 96  CARFLRRWGERI--------GLSRQFTIADADDAKRIIKDICADFDADMASDDVRVKPET 147

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
              AI  AK+    ++ ++             +E++         ++      +  RL  
Sbjct: 148 AIAAISRAKS--RCMNAVQWRSMSKYPPGTAMHEEH--------TYVCRIYAEYESRLAS 197

Query: 202 LNASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
            NA       +  ++   EH  L       +++     +      LM  ++       ++
Sbjct: 198 HNALDFDDLLMYGVKLFREHPFLSLDHIEHVLVDEFQDTNAVQYELMCHMSAGNKCVSIV 257

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       W            ++              +  + +++        +   
Sbjct: 258 --GDPDQSIYSWRHADVSHLERMRTDFPG-----------VQRVLLEQNFRSTPSILDAA 304

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
           +        +      TS  +                + V L    +  EEA  IA+ + 
Sbjct: 305 LSVMQQDKLRIQKGLYTSHAQG---------------APVVLRAFHDADEEARYIALEIL 349

Query: 380 MSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
             +            +++      +R ++  L R GI   I  G+          L + L
Sbjct: 350 RHVQCTGGLLTFADISILLRFNAQSRPLEAALQRHGIPYRILGGLRFFDRAEIKDLLAYL 409

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                      +  ++  P    G        A    E V L               +  
Sbjct: 410 VVTENPAYTPGVLRILNVPKRGIGTKSVQALLAAAQAEQVPLLTYLERVS-PAAAYGMRP 468

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            +    +       + R + E+      L+  +L+        + + +      ++ +  
Sbjct: 469 AVVKSVSQFVQTIQELRNAAENGSSVADLLHLVLKLTRYEEHLRPDPDFDSRWENVQELV 528

Query: 555 KLTVTCL-------QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
               +          +      ++        E     S+ + +    +  +        
Sbjct: 529 SFASSIDLPPQSPPSHHGEPVRKRARVSENRPEDANEFSVHNIVDNVHADEEVATTPLSA 588

Query: 608 IIT-RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            +    +  +    +    + + I     ++ L +  + L    +G++P   +       
Sbjct: 589 FLESSALASDLGVQEGSPPAMVTISTCHAAKGLEWPVVFLPASEDGIYPFYRST------ 642

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASR----WLQRL-- 719
                    T E+   +    +      +  LI + S R   +   +SR    +L  L  
Sbjct: 643 ---------TPEERREERRLYYVAMTRAQTNLILSWSHRRLVMSEWSSRQLSPFLAPLVS 693

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
              GG    D      + +   +    +             P    +    +    +   
Sbjct: 694 KAHGGHVPLDKKPMSDESWSHVSPPFTHAWLGVTASILSRSPITLERLNELA----EAFA 749

Query: 780 NDPYAVYARRILKLDFIPHFKKD 802
             P     RRI            
Sbjct: 750 TSPTGQQYRRISAQIPSGTPSAP 772


>gi|87302319|ref|ZP_01085144.1| possible exodeoxyribonuclease V gamma chain [Synechococcus sp. WH
           5701]
 gi|87283244|gb|EAQ75200.1| possible exodeoxyribonuclease V gamma chain [Synechococcus sp. WH
           5701]
          Length = 1110

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 92/867 (10%), Positives = 208/867 (23%), Gaps = 49/867 (5%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
             LL   L ++    P +P    +V++ V T    + L  +     G  +  +      G
Sbjct: 10  ADLLAQLLGQHLLLAPPDP--FETVSVVVNTWPTSRWLGEQLALELGGIAANI-RFPFPG 66

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
             +       L  S   + P      +  +  L+              + E         
Sbjct: 67  SQLRAIVEQLLGESTEGSDPWRAGDLVWPVLELLPQLVEAPEAAPLRRWLEHRDDGGELD 126

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL--LAADFLKIASKYWTERLV 200
           A    LA+ +AD +D +                          +  +  +  ++  +RL 
Sbjct: 127 APLWQLARAIADGLDDLSLYRPAMALAWWQGGSGDSRGNALPESLAWQPLLVQHLRDRLG 186

Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
           +          I  +R + +   +    P+ + G + + P   +L+  +A      + L 
Sbjct: 187 QKPFGLKALDLIERLR-QGQISGEAIASPLRLFGLSSAPPVQVQLLQALALVVPVDLYLL 245

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY--SLAKLLDFLDIKREDVKRLGNVSN 318
                +         E    +                L      L  + + +      S 
Sbjct: 246 TPCADLWQRCIERRRELQDALALEQPFGLDWLLQTPGLEARFGRLGGEFQQLLEGTGESE 305

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----------DVALIEADNE 367
               +   +         +  RN  +LE     + +  +            +        
Sbjct: 306 LGSAQERDLFLLPATAAAAAQRNPSLLEQLQEQLAQRAAASPLKRSGEDHSLEFHPCPGR 365

Query: 368 REEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLELTRFGI------NIDISA 417
             +   +   L   L  +     +   ++T   +    +   +              ++ 
Sbjct: 366 LRQVQIVRDRLLQLLASDPSLEPRHILVMTPQVDQLAPLLASVFSDSDATGVELPWRLTD 425

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
              L     +  L  +L    +      +  L++    +     +    A     L A  
Sbjct: 426 RSQLDDAGIAQSLLQVLRLAGERLTASGLEGLLESTALQEHHQLEPHEAAAITRALQASG 485

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                       +                    +      + A   +    +     +  
Sbjct: 486 FRWGLDGSERGGAEQHSLSWAIDRLLLGLVLPDQPGLAIGDCAPHPLAGTPESQGRWILL 545

Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
            T        L  S   +    CL+ +  D         +E      +         G  
Sbjct: 546 LTRLRRALAELRHSRRAEEWGPCLRGLLEDLFGDGGERAWELTTIHQAIAEWTAGAAGCT 605

Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
           +         ++   +  ++ +    +S  L I      R + +  ++L GL+  V+P+ 
Sbjct: 606 LTIPPTVVAAVLQERLAADSGRFGH-RSGALTISALEPMRAIPYRVIVLMGLDAEVFPRR 664

Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT-IASRWL 716
             +  F     Q  L                 + +   HL+ + S R+      +     
Sbjct: 665 RQRPSFHPMEHQRLLGDPDPADQDRYV-LLEALLSARDHLLVSWSSRDERKGDPLPPPAP 723

Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
            R  +             G         LD     P   RP P           S  +  
Sbjct: 724 VRQWLDQLRADLGAEGFEGLVVDHAVNPLDRRNFLPAGHRPPP-----------SCDQRL 772

Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
           +         A  +  L  +   +        GT                   ++   + 
Sbjct: 773 RQARQRLEDPALAVQPLQPLARRQPPEPVAANGTSAPE------GDPTTDPFEDLRRWLM 826

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKI 863
              DS  ++  L P            +
Sbjct: 827 APQDSWLQQLGLRPREWADPVEDLEAL 853


>gi|71899304|ref|ZP_00681465.1| Exodeoxyribonuclease V, RecC subunit [Xylella fastidiosa Ann-1]
 gi|71730930|gb|EAO33000.1| Exodeoxyribonuclease V, RecC subunit [Xylella fastidiosa Ann-1]
          Length = 1121

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 107/930 (11%), Positives = 211/930 (22%), Gaps = 115/930 (12%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
              +L G L E  R       LL   TI +P     + L++      G  + +     + 
Sbjct: 17  ALDVLAGLLAETLRSPVPGQSLLVPDTILIPQAAMRRWLQATLATTHGVVANL--EFLTP 74

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
           G+ V     A+L    N       +   +   RL    R+        L           
Sbjct: 75  GEFVARALDANLGAVPN------ALDTAVLHWRLYAALRDPALLTQPALAELHAYLADGD 128

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 LA+ L+   +  +     W  L   +                        R   
Sbjct: 129 LFKPWTLAEALSAAFEKYQAWRCDW--LLRWEAGADPDDPQAILW-----------RHSV 175

Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             A+         +           +G    + I  +    P   R+++T A        
Sbjct: 176 NGATHRARRIHDYLNRYGSGTAPPPQGLPARLFIFATLNISPDVLRVLATQAQVGTLHFY 235

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI---KREDVKRLGN 315
           LP                          T      ++               E V   G 
Sbjct: 236 LPTPTKEYWGDAQPFTQRLHQPTDCVTQTGENRLLHTWGAAGRDFMTVLGNYEVVHPSGE 295

Query: 316 VSNEMYGRSM----------VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
           ++                    S             +  +   +P  +     +      
Sbjct: 296 ITAYDDPEQRPGTTLDEGGLRDSLLQRLHADLFHNRSAPVPAPLPAPRLEDPSLQFHACH 355

Query: 366 NEREEAISIAIALRMSLDE------------NKKKSALITADRNLARRVKLEL-----TR 408
               E   +   LR  L+               ++ A++  D +L       +       
Sbjct: 356 TRLRELQVLHDRLRALLEPNSPEGQRFNPPLQPREIAVLAPDIDLYIPYLEAVFGGHAHS 415

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH-PLAKFGFPEKYLSRA 467
             +   ++   PL     + +   LL+          I  L+   P+A     +      
Sbjct: 416 DPLPYTLADASPLIDEPLAEVFLRLLDLPVSRFGLHEILDLLASLPMATLAGFDTQTLEI 475

Query: 468 KN-ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
               L     R   ++    + ++   D          +    +  ++ D        D 
Sbjct: 476 LRSWLTAAGARWGLDAAHRAEHQAPADDAYTWSFALDRLLLGHASGADADIAGVAAWPDL 535

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--------WFE 578
               +T L T                   L     + +       LP++           
Sbjct: 536 EGSMLTALDTLIRLLRVLANTRQRLSEALLPTQWRERLLSLLDALLPDIPTAPSGIQRPL 595

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E  + L   F+              E + +    +  +T       +  + I   +  RL
Sbjct: 596 ERLRRLIDTFATDATRAGVALPVPAEVVRMHFAALLADTDTRAPLLTGGISIGRMVPMRL 655

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
           L F  + L G+N+G +P+             L    +   +    +         F  A 
Sbjct: 656 LPFRVICLLGMNDGDFPRRDPAAGLNRLTAELGTAQRRPGDRSRRDDDCLLLLQLFSAAQ 715

Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRL----------------------------LVLGG 724
              ++ Y  +   +      S  L  L                                G
Sbjct: 716 DVFYVSYLGADPHDGSLREPSPLLTELLSTAATYHADPSTAAKTLLLRHSLQPFSPTAFG 775

Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
            D           +      ++          P+  P L           +++  + P  
Sbjct: 776 VDGDPRRFSYHPLWQAAAASIEGQRHPLAPWCPRRLPALPDPEPALPLHSLRRFFSAPAE 835

Query: 785 VYARRILKLDFIPHF-----------------KKDPDRTDRGTLFHNIITELIKKRINKN 827
            + ++ L L                       +   D     +L H     L  +   + 
Sbjct: 836 QFLQQRLGLRLPEPPQTTDECDPLWLPSHGLERHRLDILIFASLLHETDDTLYPQLRARA 895

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                 L +Q +    E           WR
Sbjct: 896 LLPSGPLGQQQLQERIEHLRPYAQAFAHWR 925


>gi|225019255|ref|ZP_03708447.1| hypothetical protein CLOSTMETH_03208 [Clostridium methylpentosum DSM
            5476]
 gi|224947886|gb|EEG29095.1| hypothetical protein CLOSTMETH_03208 [Clostridium methylpentosum DSM
            5476]
          Length = 1188

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 103/862 (11%), Positives = 212/862 (24%), Gaps = 109/862 (12%)

Query: 169  LHALKNEKYGMWW------LLAADFLKIASKYWTERL----VELNASSP-----VGYQIA 213
            L  L       +W            L    + ++ER+     E N            ++ 
Sbjct: 330  LKELLTCSEEEFWEDIRLQQPVLRKLCEVVERYSERMDASKREKNILDFPDLGIFAIRLL 389

Query: 214  LMRAEAEHLMKG-------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
            L R E + L              I++            L   V+       +    D   
Sbjct: 390  LERREGKLLRTPVGEAVSSEIDEILVDEFQDVNQMQDMLFEAVSKDE--TNLFLVGDIKQ 447

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +   + +      +     +   Y     L       E+ +    V+  +      
Sbjct: 448  SIYRFRQASPEIFLQKRARYADFSTGSYPARLTLA------ENFRSRPEVTGCVNYLFRQ 501

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD-------NEREEAISIAIALR 379
            +    L                 P      +++ LI+             EA  I   + 
Sbjct: 502  LMSEQLGELDYGEGEQLRAAASYPPHPDAQAELHLIDTAADDSDEGRVAIEANYIGRKIL 561

Query: 380  MSLDENK---------------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
              L                     + L+ + ++ A     +L   G+++          +
Sbjct: 562  SMLRNGYPVTGEDGKLRPCTLSDFAILLRSKKDKAEVYAEQLMHLGLDVWTENTSGYFRS 621

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
               S++ +LL  I      + + +++  PL  F   E    R  +    + L    +   
Sbjct: 622  REVSLMLNLLRVIDNPLQDIPLLSVLLSPLYGFTPDELAELRILDRRAPLYLCVTASDSG 681

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                    L R+      T V     ++ +E    A  L   +      L   +   +  
Sbjct: 682  HCREFVQSLSRLREAAAVTSVEKLIQKIYDETLFYA--LFGAMESSEQKLANLRLLLSYA 739

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
             G    S   +     L+ +   E             +  S++    +     ++     
Sbjct: 740  AGYERGSG--RGLSGFLRYIDTAEEANRDFECANIFTENSSAVRIMTMHKSKGLEFPICF 797

Query: 605  WIDIITRLIDGE--TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
              +   R    +  +V            L   E          L    E      + +  
Sbjct: 798  VANCAGRFNQRDLSSVYCLSNTHGFAMKLTVPELLKQYPTLPYLAAQLENKRALLSEEMR 857

Query: 663  FL---------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI------YTR 701
             L               +      L  K A + +      F                  R
Sbjct: 858  VLYVAMTRAREKLILTIAADNPQQLVQKAAVQIVEGERLPFYPLYSAHSYADWLLMGLLR 917

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDF-----FDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
                 ++ + A   L       G          + ++ G+  L+  +      ++     
Sbjct: 918  HPSAGDLRSQADSGLSPYEPQSGDARCPLKVVLDGQEYGEQELEQAQPAPEADEETLAAL 977

Query: 757  PK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
             +          L   P   S ++I +             L        ++     +RGT
Sbjct: 978  RQNLGYRYAHAALSEIPAKLSVTQIAEHSRPAS-------LTRRPQFERERGLTPAERGT 1030

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQII------DSHFEKENLPPHIDIIWRHLFHKIS 864
              H  I      R   +       +++         +  +++ L                
Sbjct: 1031 ATHQFIQFADFARAADDLEAEISRLRENGFIDPQQAASVDRKGLESLFHSPLAQRIRAAR 1090

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924
              + E +        +IF         +   I + G AD + L +   + I DYKT    
Sbjct: 1091 RVYRELDFFYDLDASEIFPEQET----DGEKILVQGIADCV-LDEGESLVIIDYKTDRA- 1144

Query: 925  KKETAQKLIDPQLSLEAAALKA 946
             +E        QL L   A++A
Sbjct: 1145 TREQIAGRYRGQLMLYKRAVEA 1166


>gi|116074476|ref|ZP_01471738.1| UvrD/REP helicase [Synechococcus sp. RS9916]
 gi|116069781|gb|EAU75533.1| UvrD/REP helicase [Synechococcus sp. RS9916]
          Length = 795

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 76/771 (9%), Positives = 191/771 (24%), Gaps = 117/771 (15%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF----IEITGKKSTILPIIKSL 81
           L   +         +P   A +     T +A +E++        +         P   +L
Sbjct: 36  LTHRIAHLIGEHGADP---AQILAVTFTNKAAREMKERLELLLAQRLASSQFGQP-WSTL 91

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             V + +  + +         +     L   AR++    +K  D     + +       +
Sbjct: 92  PAVEQRQLRSRIYREVTKELWIGTFHALF--ARMLRFDIDKFKDAEGLTWTKQFSIYDEA 149

Query: 142 PANAIW---LAKNL------------ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
            A ++    + + L               I   + +    + L A    +          
Sbjct: 150 DAQSLVKEIVTQELQLDPKRFEPKKVRWAISNAKNQGWLPDQLEANAEGQR-------GK 202

Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPA 241
            +    + + + L   NA       +  ++   ++             +++     +   
Sbjct: 203 LMADVYRRYRKALAANNALDFDDLLLLPVQLLQQNEQVRGYWHRRFAHVLVDEYQDTNRT 262

Query: 242 TARLMS---------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
              L+           V ++  G  V    D       +             +       
Sbjct: 263 QYELIKLLVTDGKEPQVYDNWTGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGDKAPD 322

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
             +  + +  L+        +   +N +   +                 ++ ++  +   
Sbjct: 323 DAT--RTMVKLEENYRSTATILEAANALIANN-----------------SERIDKVLRPT 363

Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTR 408
           +     + L   D+E  EA ++   LRM    N +      A++      +R ++  L R
Sbjct: 364 RGEGELITLTRCDDEIAEAEAVVHRLRMMEAANPELSWGDMAVLYRTNAQSRAIEESLVR 423

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
           + I   +  G+          +   L  +    D +++  ++  P               
Sbjct: 424 WRIPYVVVGGLRFYDRREIKDVLGYLRLLINPADTVSLLRVINVP--------------- 468

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                              +    + R     N   +P W      E    A  L     
Sbjct: 469 ----------------KRGIGKTTIQRCTDAANQLGIPLWDVVSDPE---AARSLGGRSA 509

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL-DEHRKLPNLWFEEEGKTLSSL 587
           + +        +      +   S+  +  +     V                  + L + 
Sbjct: 510 RGLLQFCELINDLKQRIHDTPPSELIQQVMEKSGYVSELIAEGTDEAEERRRNLQELVNA 569

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
             +  E               +           K  ++  + ++    S+ L F  + L 
Sbjct: 570 GLQYQEENDEGDLEG-----FLASAALASDADSKDTEADRVTLMTLHSSKGLEFPVVCLV 624

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
           GL +G++P   + +   S   +  L      +   +        +          +R   
Sbjct: 625 GLEQGLFPSYRSLDDPASLEEERRLCYVGITRAKERLF-----LSHASERRLWGGMR--- 676

Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
            P + S +L  L                        +L    +      P 
Sbjct: 677 EPAVPSVFLSELPEALVQGDIPRSGGAAIRREQRLDRLTRVDRAKPTSAPA 727


>gi|298524440|ref|ZP_07011849.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A]
 gi|298494234|gb|EFI29528.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A]
          Length = 695

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 78/659 (11%), Positives = 175/659 (26%), Gaps = 82/659 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R   + + G+K+  +  + +              L   LN   S
Sbjct: 68  GQILAITFTNKAAAEMRERVVGLVGEKARYM-WVSTFHSTCVRILRNQAALIEGLNSNFS 126

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+ +    L   IK   P                   LA+ I  ++ E  
Sbjct: 127 IYDADDS-RRLLQMVGRDLGLDIKRYSPRL-----------------LANAISNLKNELI 168

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                 A   E         A       +        L+    +G  +A+++A  +    
Sbjct: 169 DPHQALAGLTEDSDDLARAVASVYDEYQRRLRAA-NALDFDDLIGETVAVLQAFPQIAQY 227

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANH------PNGAIVLPGLDCHIPTAIWNTITE 276
            +     +++     +  A   L+  +         P G + +   D       +   T 
Sbjct: 228 YRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCV-VGDADQSIYAFRGATI 286

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++            +P      L       +  +    +V     GR             
Sbjct: 287 RNIEDFE-----RDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRR------------ 329

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALIT 393
                    E ++         +    ADNE +EA  +A    AL    +      A+  
Sbjct: 330 ---------EKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDVAVFY 380

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              N +R ++  L R GI   +  G+          + + L  +    D +++  ++  P
Sbjct: 381 RTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRILNTP 440

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G   +                   +        +   +      NT      +   
Sbjct: 441 RRGIGDRAEACVAVYAEN----------TGVGFGDALVAAAQGKVPMLNTRAEKAIAGFV 490

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           E   EL   L D + + +  ++     +     +    +  +L    L  +    H    
Sbjct: 491 EMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARL--DNLNELVSVAHEFST 548

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
           +                +      +    +    +    +  +  +     +  + ++  
Sbjct: 549 DRENAAA----------LGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTL 598

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
             ++ L F  + + G  +G++P   A +       +  L      +   +       A 
Sbjct: 599 HTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITR--ARQRLYVSRAI 655


>gi|327482730|gb|AEA86040.1| exodeoxyribonuclease V gamma chain [Pseudomonas stutzeri DSM 4166]
          Length = 1092

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 91/932 (9%), Positives = 203/932 (21%), Gaps = 91/932 (9%)

Query: 34  FRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADL 93
                 +P   A   + VP++   + L  E     G    +      L        +  +
Sbjct: 21  LAQPLADPFAPAR--VVVPSQGMGRWLTLELARRQGIAMQLE---LQLPAAFVWDLSRTV 75

Query: 94  LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
           L S       S       L   +       P  ++     +           + LA  +A
Sbjct: 76  LGSLPEQSAFSPTTLTWRLYGWL-----CEPANLELAPRLAQYLDGGDERRRLSLAAKIA 130

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
           D+ D        W                     L      W E   + +          
Sbjct: 131 DVFDQYLLYRDDWLAAWERGETLDLGPDEAWQALL------WRELTKDGHPHRARLLGDL 184

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
           L R   +  +      +++ G +   P   R++  +A H +  +             W  
Sbjct: 185 LQRLYRDEPLPDLPERLLVFGISSLPPHHLRVLDGLARHIDVVVCALNP----SREAWGE 240

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
           I +         +            LL  L  +  D            G       S   
Sbjct: 241 IRDIRELARQPESGVDDWYLDVGHPLLASLGKQGRDFFDSLFSLTASEGSQEFGLYSEDE 300

Query: 334 PDTSDMRNTDILENKIP----------NIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
               D     +  + +            + +    + +  A +   E   +   L     
Sbjct: 301 DLHDDSLLHALQNDILRLRTRLPDERITLAENDRSLEVHIAHSPLREVEILHDQLLARFA 360

Query: 384 EN----KKKSALITADRNLARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLL 434
            +      +  ++T D          +             ++     +          LL
Sbjct: 361 ADPALTPDQVVVLTPDIERYAPFIEAVFAPREGSPRIPYSLADRSLRAEVPLIEAFLELL 420

Query: 435 NAIFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
                      I   ++ P     A     +  L R       V    +      + L +
Sbjct: 421 LLAQSRFAAEEILAWLEQPAIARRAGIESEDLPLLRDWLREAGVRWGRDGEQRARLGLPA 480

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVL----LVDHILQCITPLVTYKTNKNSTCG 546
                     +   +          D+   +     L          L            
Sbjct: 481 EPAFTWRQGLDRLLLGFAAPPQLAGDRAPLLGEHWPLDALEGARGQLLGRLVGFVERLGS 540

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                   +       ++ +            E    LS   + + +            +
Sbjct: 541 LADQLARPRPLAEWADDLQVLIDTLFDEREAGETLLLLSQASAALRDQAQAADLTRPIEL 600

Query: 607 DIITRLIDGETVKPKIEKS---STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
           +++ + +     +           +     +  R L F  + L GL++G +P+ T  + F
Sbjct: 601 ELVHQQLSAALQQGGGASGFLTGAVTFCTMVPMRSLPFRVVCLLGLDDGAFPRRTPPSGF 660

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV 721
                        A +   +      + +  + L  +   R+  +N     S  L  +L 
Sbjct: 661 DLIGRHPRRG-DRARRLDDRYLLLETLLSARQALYLSYVGRDPRDNAVLPPSVLLSEVLE 719

Query: 722 LGGTDFFDNLKKRG----------------------------QCYLDWTRKLDYTTKQPH 753
                       R                               +    ++L    +   
Sbjct: 720 AVDMTAVLADGARPVSQKILIAHPLQPFSPRNFGEAPCAGYSLPWFRAAQRLAEPPQAQA 779

Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                     +    T   S++ Q    P      + L L      +             
Sbjct: 780 QPFASLLAEPDEAWLTIEPSQLLQCFRHPARFLLEQRLGLRLADDQESLASDEPFDLEMP 839

Query: 814 NI--ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
               +  L  + + +   +                 L   +             +F    
Sbjct: 840 AWNGLRRLSLQAMEQGWSDEEERRMACAAGWLPTGELGQAL----WGKLRGPVRAFAPRL 895

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
            +++          P  + I   G+ + G+ D
Sbjct: 896 FELRPDAVP----EPLPVDITLAGVRVHGWLD 923


>gi|227496042|ref|ZP_03926353.1| RecB family exonuclease [Actinomyces urogenitalis DSM 15434]
 gi|226834435|gb|EEH66818.1| RecB family exonuclease [Actinomyces urogenitalis DSM 15434]
          Length = 271

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 70/231 (30%), Gaps = 21/231 (9%)

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
            S S  K  +  P     R + +L            T +GTL H ++  L      + T 
Sbjct: 1   MSPSRAKDFMQCPLMFRLRTVDRLPEPGSL-----ATHKGTLVHAVLERLYDLPAPERTL 55

Query: 830 EIN-------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
           E             +  +         P     W      +  ++ + E   +  +E   
Sbjct: 56  EAAVGMLPGQWEAHREKNPVVMDLFDSPQDVAPWLEEARALLRTYFQMENPTR--LEPSE 113

Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
             +  +    S G+ L GF DR+D+   G + + DYKTG +P        +  Q+     
Sbjct: 114 RELFVQTETRS-GLLLRGFVDRLDVAADGAMRVVDYKTGKSPAPRFQHDAL-FQMRFYGL 171

Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
            L       +  +    L  + LK    +       +    +   E     
Sbjct: 172 VLWR-----LRGQAPRRLQLVYLKDGRILTHDPVLAELEGMETRLEHLWDE 217


>gi|254432144|ref|ZP_05045847.1| ATP-dependent DNA helicase PcrA [Cyanobium sp. PCC 7001]
 gi|197626597|gb|EDY39156.1| ATP-dependent DNA helicase PcrA [Cyanobium sp. PCC 7001]
          Length = 800

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 72/790 (9%), Positives = 197/790 (24%), Gaps = 120/790 (15%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L   +     +   +P   A +     T +A +E++            +L    +     
Sbjct: 37  LTHRIAHLIGHHGADP---AELLAVTFTNKAAREMKERLE-------LLLAQKLAQSQFG 86

Query: 86  EEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
           +   T  LL    L   +   + + L +     ++   L   I        LS     + 
Sbjct: 87  QPWSTLPLLEQRQLRSRIYREVIKDLWIGTFHALFARLLRFDIDKFRDPEGLSWTRQFS- 145

Query: 145 AIWLAKNLADIIDII--ETEEKKWEDLH------ALKNEKYGMWWLLAAD---------F 187
            I+   ++  +I  I  +      +         A+ N K   W     +          
Sbjct: 146 -IYDEGDVQSLIKEIVTQELGLDPKRFEPKKVRWAISNAKNQGWMPEQLEADAGGQRGKL 204

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPAT 242
           +    + +   L   NA       +  ++   ++             +++     +    
Sbjct: 205 MAETYRRYRRALAANNALDFDDLLLLPVQLLRQNDQIRNYWHRRFRHVLVDEYQDTNRTQ 264

Query: 243 ARLMSTVANHPN---------GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
             L+  +              G  V    D       +             +       +
Sbjct: 265 YELIKLLVTDGQDPEAYDNWSGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGDGAADE 324

Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            +  + +  L+        +   +N +   +                 T+ ++  +   +
Sbjct: 325 AT--RTMVKLEENYRSTATILEAANALIAHN-----------------TERIDKVLRPTR 365

Query: 354 KCFSDVALIEADNEREEAISIAIALR----MSLDENKKKSALITADRNLARRVKLELTRF 409
                + L   D+E  EA ++   +R       +       ++      +R ++  L R+
Sbjct: 366 GEGEPITLTRCDDEVAEAEAVVHRMRMLDAAHSELRWGDMVVLYRTNAQSRAMEESLVRW 425

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
           GI   +  G+          + + L  +    D +++  ++  P    G           
Sbjct: 426 GIPYIVVGGLRFYDRREIKDMLAYLKLLVNPADTVSLLRVLNTPKRGIGKTTIERLT--- 482

Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                                          +  +           D E    L     +
Sbjct: 483 -------------------------------DAANQLGIPLWEVVSDPEAVRSLGGRSAK 511

Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
            +       ++  +   +   S+  +  +     +                        +
Sbjct: 512 GLLQFRELLSDLQARSQDAPPSELVQRVMEQSGYLAELIAEGTDEAEDRR------RNLN 565

Query: 590 KIIETG--SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
           +++        +       D +           K  +   + ++    S+ L F  + L 
Sbjct: 566 ELVNAALQYQEENEEGSLEDFLASAALASDADSKDTQQDRVTLMTLHASKGLEFPVVFLV 625

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
           G+ +G++P   +     +   +  L      +   +        +          +R   
Sbjct: 626 GMEQGLFPSYRSLEDPAAMEEERRLCYVGITRAKERLF-----LSHASERRLWGGMR--- 677

Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
            P + S +L  L          ++ + G   +   ++LD  T+    +  +         
Sbjct: 678 EPAVPSVFLAELP---EELVQGDIPRSGGAAIRREQRLDRLTRVDREESRRVASGGAGGA 734

Query: 768 RTYSFSEIKQ 777
              +      
Sbjct: 735 PANAVRRRGA 744


>gi|213612591|ref|ZP_03370417.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 527

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/518 (11%), Positives = 126/518 (24%), Gaps = 61/518 (11%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   + +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLKALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
               +    +    + ++     + + E   +   L   L+ +     +   ++ AD + 
Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  +     T   +   IS      +        SLL+          +  L+  P
Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477

Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           +   +F   E+ L   +  +    +R   +  ++ +L+
Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELE 515


>gi|302343285|ref|YP_003807814.1| ATP-dependent nuclease subunit B [Desulfarculus baarsii DSM 2075]
 gi|301639898|gb|ADK85220.1| ATP-dependent nuclease subunit B [Desulfarculus baarsii DSM 2075]
          Length = 1032

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/698 (9%), Positives = 161/698 (23%), Gaps = 90/698 (12%)

Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSALITADRNLARRVKLEL 406
             +     + + L  A     E  ++        +   + ++ A++  + ++  ++ +++
Sbjct: 248 AESPGDPGAALELWRAAGRYGEVEALLCRAAELTAGGVDPRRIAVVFPELDIYGQMAVDV 307

Query: 407 T-RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
             R  + +D  +  PL+ +     +  LL       +  A++ +   P            
Sbjct: 308 AKRLELPLDYRSERPLAASPLVLAVLGLLELPGLDYERHALSAVWHSPYMGPALARLAGL 367

Query: 466 RAKNALEL--------------------------------VALRGNKNSYDIMDLKSLVL 493
                 E                                   +   +       L   V 
Sbjct: 368 ERAPRAESLLAAAGYIDARQTPPQTRLAGEEGVALAKACAWLMERMRPLARRQGLPDFVG 427

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
             +A            +  S  +     L     L+     +            +S    
Sbjct: 428 AALALLAELNLGAVVLAEPSRPEFIARDLAALAALEDALAQLGRAAESVRQGRAMSPGRL 487

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
             L    L+                        L  + +  G        +       L 
Sbjct: 488 LSLLRQALRLQSAPGPGGQRGGVRLLRLDQAMGLRLEYVLAGGLDLGQFPQKPQAPNMLS 547

Query: 614 DGETVKPKIEKSSTLFILGTLESRLL-----------NFDTLILGGLNEGVWPKNTAKNP 662
             E +    +    ++     E                   ++     +G          
Sbjct: 548 SQERLALGQKAGLPVWRTDDEEYAGQMLRLCWLLAGVERGAVLSCAAADGQGASQEPAFF 607

Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR--------------------HLIYTRS 702
                      L      +   A     A   +                           
Sbjct: 608 LREAARLLQRRLPEPRGGVYGQAPGLATAVDAQGLLGGLSHGLLRRRGRADLAQAALHHW 667

Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
           L  +       R L  L  +     + +L   G+               P  +       
Sbjct: 668 LGLDAGLARRWRRLADLAAIERRRLWLDLLPGGRRQELADEYGGRLHS-PQAQALLAEVL 726

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            +   RT + ++++ +   P A +  R+L +D +          D G + H  +      
Sbjct: 727 AQPAWRTLAPTQLEAMAACPMAWFFGRLLGVDALEEPGLALAGRDEGQMVHTALARFFAP 786

Query: 823 R---INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI----- 874
                  +       ++  ++  + +           R    +     L    +      
Sbjct: 787 EAFDPRWDREARRARLEDCLERAWAEAGKNQASHGFARSWRKRAVCELLAATLERMWSAL 846

Query: 875 QSSIEKIFVNIP-----AKMAIESIG-IHLTGFADRID---LLKSGFVDITDYKTGDNP- 924
           +     + V          + +     + L G  DR+D         + + DYK   NP 
Sbjct: 847 EGGWRPVAVEERIDDWGLSLDVGDGPALVLGGVLDRLDAGQEDGRQALRVVDYKHAANPD 906

Query: 925 --KKETAQKLI---DPQLSLEAAALKAGSFSQIDCRKV 957
             K +  Q+       QL L  AA      +++   ++
Sbjct: 907 LYKPQAKQEHWFVSAFQLPLYMAAAAKQRPAEVALGQI 944


>gi|300868159|ref|ZP_07112791.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300333783|emb|CBN57971.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 265

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
            P   S ++++     P + Y +    L     F         G   H  + ++      
Sbjct: 1   MPYPLSATKLQDYHRCPKSYYFKYERGLKTKAFFVSP----ALGKALHAALAKIYWDWHY 56

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN- 884
            +       + Q          L   +      + +     F+     ++   + + V  
Sbjct: 57  LDPLPKMTWINQCW--ESVSSLLSSELQASGAEILNTYYCQFIAPLISLR---KPLAVEG 111

Query: 885 -IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
            I A + + ++   +TG  DR+D L+ G +++ DYK+          + ID Q+ L   A
Sbjct: 112 KIQATLNLCNVDFKITGRYDRLDWLEDG-LELIDYKSTKTMPAFDPDE-IDLQIGLYYLA 169

Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
           L+      +      +L Y++L ++   +     K++  A
Sbjct: 170 LEQKYHQSLKQM---SLLYVQLGEEIVFEATPEHKQQVEA 206


>gi|114799490|ref|YP_761244.1| UvrD/REP helicase domain-containing protein [Hyphomonas neptunium
            ATCC 15444]
 gi|114739664|gb|ABI77789.1| UvrD/REP helicase domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 1137

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 92/907 (10%), Positives = 225/907 (24%), Gaps = 125/907 (13%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +   + ++  L         +   ++P     + +   + +A  E+    I      +
Sbjct: 218  PGTGKTQTLVGRL------SVLKNRGVDPES---ILLLTFSNKAAGEMTDRAIAAWPAAA 268

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY- 131
                 I +      +        +     P     RL++    I +  ++ P +    + 
Sbjct: 269  GSA-WIGTFHSFGLDLLRRFHDRAGLPPDP-----RLIDATEAIALLEDEFPRLRLKHFN 322

Query: 132  -PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                P     S  +AI  AK+  +++D     E   +   A +  +         + +  
Sbjct: 323  DLWDPTDNLRSILSAISRAKD--EVVDQHRYRELAQQMADAAETAEEQAAAEKCLE-IAS 379

Query: 191  ASKYWTERLVELNASSPVGYQIA---LMRAEAEHL--MKGTKGPIIIAGSTGSIPATARL 245
                + +   +  A            L+ ++      ++     +++        A+ RL
Sbjct: 380  VYDLYEQLKSDRGAVDFGDLIARPTALVESDEAVRVEIQRRYEHVLVDEYQDVNRASVRL 439

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            +  +   P+G+ +    D       +       ++           P  +  +L      
Sbjct: 440  LRALK--PDGSNLWVVGDAKQSIYRFRGA----SSYNIDRFETEDFPGGTSLQLSTNYRS 493

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
             +E        +      S   + +F                            + +  +
Sbjct: 494  SQEICNTFSTFATTRMAASGFQANAFKGKSGVAP--------------------SFVSVE 533

Query: 366  NEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
            ++  E   IA  +  + D+    +  A+I         +   L   GI +      PL  
Sbjct: 534  SKDHEIDEIAARISAACDDGTTFRDQAVICKGNARLAEIAAGLEARGIPVLFLG--PLFD 591

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                    SLL+ +               P   F         A    +       +   
Sbjct: 592  RPEIKEALSLLSLVIDPRAMALTCIASMKPFRMFIEDVAVAIEAVRTTKKPLPLDWRTVL 651

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
            +                            +    E        ++     +    T    
Sbjct: 652  ET---------------------------ASGMSEGGRASAKALVGAFEEIEPTATAWQV 684

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                    D T+L                  LW  +    L S+  +          + I
Sbjct: 685  FTKIYL--DRTRLAADIATQAREGNANPALALWQFQNF--LRSVLPEKSGYPIRDLLDHI 740

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT----- 658
              + I++   D   +    +  + + ++    S+ L F  L L  L     P++      
Sbjct: 741  RRLVILSDERDLRDLPATAQTINAVRLMTIHGSKGLEFKMLHLPSLTSDSIPRSAKQSRG 800

Query: 659  --AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR-- 714
                +  +   M    +   A     Q    F   +  +  ++  +  + +     SR  
Sbjct: 801  LHPPDGMIEGPMFRGSDAIDAGHDEEQRCLFFVALSRAKDGLFLYAPNKKSNGHRQSRSS 860

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            ++  +                        +   +  +      + F          S S+
Sbjct: 861  FVDDISG------------------QLADQKPISAVRDVVGEAERFTLEVDGVARMSPSQ 902

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH- 833
            +      P   +   +L++                   HN +  +I +   +     +  
Sbjct: 903  LATFDKCPRRFFFAHVLQVGGRRLESAP-------MRMHNAVQAVIDELTARPDDTPDET 955

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
             M+ IID+ +       H               F     + +             +  E 
Sbjct: 956  EMQSIIDAAWVAHGPIEHGYASEYRQICDELLKFFILLRQGECRRPP----QTLSLRFED 1011

Query: 894  IGIHLTG 900
              + +T 
Sbjct: 1012 AEVVVTA 1018


>gi|223936289|ref|ZP_03628202.1| recombination helicase AddA [bacterium Ellin514]
 gi|223895151|gb|EEF61599.1| recombination helicase AddA [bacterium Ellin514]
          Length = 1211

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 100/934 (10%), Positives = 219/934 (23%), Gaps = 128/934 (13%)

Query: 105  NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
             ++  LE A  +     K  ++  D   E    +     + + LA+  +     +   E 
Sbjct: 279  PLEDFLEEATFLRSLARKTKEV--DPLAEDWDWIRGQMTSLLGLAEQFSAAF-SLAKREL 335

Query: 165  KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
               D H L+     + W          ++ W ++L                         
Sbjct: 336  GVVDFHDLEQHSLQLLWDRNTKQATAVARQWRKKL------------------------- 370

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                 + +        A   ++  ++     +      D       +             
Sbjct: 371  ---RFVFVDEYQDINDAQDAILKALSREGEESNRFLVGDVKQSIYRFRLADPHIFQNYIE 427

Query: 285  NTTYSTHPQYSLAKLLDFLDI---------KREDVKRLGNVSNEMYGRSMVISKSFL--- 332
                +      L       +          +    + +G+V  +   R    +       
Sbjct: 428  TWRGADGKAIPLVDNFRSREAILNFINSLFEGLMRRDIGSVPYDDEARLRFGNAENRVDL 487

Query: 333  -------PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE---EAISIAIALRMSL 382
                   P     +R    LE K     +     A  E  N  E   EA  I   L    
Sbjct: 488  SCAKEDAPRVELHLRLKGSLEAKDMPEGEGEGSRAWTEMMNLEEAEKEARLIGKRLLALK 547

Query: 383  DE----------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
             E                    + L+ +    A     E +R GI + ++ G     ++ 
Sbjct: 548  AEKHLAWDEHTKAMRPVTWSDMAVLLRSPARKAESYAKEFSRLGIPLLVARG-GFYESME 606

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-----------LSRAKNALELVA 475
             + L SLL  +      +    ++  PL      E                 +   E   
Sbjct: 607  VTDLLSLLQLLDNPLQDVPTLAVLHSPLVGMSLDELATIRLKLTKGPIWMALRRFHESDE 666

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                    D          R+A Q + +         +     L               +
Sbjct: 667  EHAGWKKADRFLKNFASWRRLARQVSLSRCLEAVLSETHYAAWLLTQHRGEQRHANVQRL 726

Query: 536  TYKTNKNSTCGNLSISDWTKL-----TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                 +        +  + +             V         +L    + K L      
Sbjct: 727  LGLAQQFDRFQRQGLFRFLRFIDAQQAAETEPEVAAVAEEDAVSLMSVHQSKGLEFPVVV 786

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            + + G       +    ++                +                   + G  
Sbjct: 787  VADLGKPFNMMDLRAEIMLDDKF--GLCPQVKPPHTGQRYPSLPYWLARQRQKQEMLGEE 844

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENN 707
              +      +      +  S       ++++  +          R+ +        +   
Sbjct: 845  MRLLYVALTRARDTLILTGSISEPVFNKRWLETSELTAATLLAARNFLDWLAGWCTKITG 904

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK----------RP 757
                 ++    L      +   +L +          K++ T+                  
Sbjct: 905  TVLKENQGRNSLFCWKVYEDDTHLIETSPSAASEAEKMEQTSVPMDAASWKKLQQKLSWI 964

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF------------KKDPDR 805
             P      +P   S S +++ + +     AR + +L                   +    
Sbjct: 965  YPHSAATHEPAKTSVSALRRRMAEDIETEARPLFELKSANPQTKAQQRKNGNNNSERLSA 1024

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE----NLPPHIDIIWRHLFH 861
             + GT  H+ +  +  +R+           +   +     E       P +   W+    
Sbjct: 1025 AEVGTTHHSFLQMVSLERVGSVEELRREAKRLEAEQLLTVEEAGSLDFPALAAFWKSELG 1084

Query: 862  KISHSFLEHEEKIQSSIEKIFV--NIPAKMA-----IESIGIHLTGFADRIDLLKSGFVD 914
                       + + +    F    +           +   + + G AD   LL    + 
Sbjct: 1085 LRIQRQ-SRHVRRELAFTVRFSPEEVAGNTPKDPELFDEEFVVVQGVADLTVLLPD-QIW 1142

Query: 915  ITDYKTGDNPKKETAQK--LIDPQLSLEAAALKA 946
            + D+KT      E A+K  + +PQL L A AL  
Sbjct: 1143 LVDFKTDRITSAELAEKVKIYEPQLQLYAQALAR 1176


>gi|163847396|ref|YP_001635440.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222525244|ref|YP_002569715.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
 gi|163668685|gb|ABY35051.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222449123|gb|ACM53389.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
          Length = 644

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 70/695 (10%), Positives = 178/695 (25%), Gaps = 113/695 (16%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
               +     T +A +E+R     + G        I+ L           +L        
Sbjct: 50  APQQILAVTFTNKAAREMRERLSNLPGL------RIRGLTSGTFHAICTRILR------- 96

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
             +I+  L+       +     +    L  E+   +  +P   I  A  +  +I   ++ 
Sbjct: 97  -ESIEGRLKGY--TSSFSIYAGEEQLQLAAEALAGVGETPPRLIE-ADEVLRLISRAKSR 152

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-- 220
                 +     +           F+    + +   L + NA       +   R  ++  
Sbjct: 153 MLTPRLMARFATDPLD-------RFIAACYRRYQRALEQANALDFDDLILTAYRLLSDDP 205

Query: 221 ---HLMKGTKGPIIIAGSTGSIPATARLMSTVAN--HPNGAIVLPGLDCHIPTAIWNTIT 275
                 +     +++     + P+   L+  +          +    D       +    
Sbjct: 206 DLLATYQQRWQHVLVDEYQDTDPSQHALIELLTRPTAQRPRSLFVVGDAMQSIYGFRNAD 265

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
               N  +++   +                      R+  ++     R  ++  ++    
Sbjct: 266 HSIINRFATDFPDA----------------------RVIELTTNYRSRQPILDAAYAIIR 303

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393
            S       L     N+ +    V + EA + R+EA  +A ++     + +  +  A++ 
Sbjct: 304 HSRSVAPMELRAAARNVDERC--VLISEARDSRDEADQVARSIADLQRQGRRLRDIAVLY 361

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
             R+++R  +  L    I   +  G+            + L  I    D +++  +   P
Sbjct: 362 RTRHMSRPFEQALRHARIPYQVRGGVSFFDRAVVRDALAYLRCIANPADNLSLTRIANVP 421

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G        A  A + + +         +   S      A +        W+   S
Sbjct: 422 ARGLGGQALATIAAYAAAQSLPISTALGHARNIPGLSPRAVEGAHRLFALLQRWWRLAES 481

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
               +  +  V      +  L      +        + +  +                  
Sbjct: 482 TMPPDHVLADVLEQSGYMAALAERFDAEELAEARAHLQELLRAAEEHTD----------- 530

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                                              +  +        + ++   + +L  
Sbjct: 531 -------------------------------LRSFLQEVALMTNTDDEDDERDRVQLLTI 559

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L +  + + GL EG  P   +     +   +  L                 +   
Sbjct: 560 HAAKGLEWPFVFVVGLEEGTLPHERSIGDPAAIEEERRLC-------------YVALTRA 606

Query: 694 TRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDF 727
              L  +  + R+       SR+L  ++  G    
Sbjct: 607 AERLYLSWTASRQRGQRLKPSRFLDEIIAFGRERA 641


>gi|229829221|ref|ZP_04455290.1| hypothetical protein GCWU000342_01308 [Shuttleworthia satelles DSM
           14600]
 gi|229792384|gb|EEP28498.1| hypothetical protein GCWU000342_01308 [Shuttleworthia satelles DSM
           14600]
          Length = 640

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 76/684 (11%), Positives = 179/684 (26%), Gaps = 100/684 (14%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK-SLGDVVEEKFTADLLLSYNLNPPVS 104
            + +   T+ A  E+++ F+ + G +    P++  +   V       +    Y+ +  +S
Sbjct: 53  QILVITFTREAAMEMQNRFLSVLGTEGI--PVVFGTFHSVFFRILREE--RGYSADSLLS 108

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
             +R L     +     +      + + +    L     + I   ++L    +  E E  
Sbjct: 109 EEKRFLLAMEALNQMGIRADRRKTETFLKRLDGLSQRETDPITGTQDLERSANETEKE-- 166

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
                  L  +   ++W +             + L   +  S     +    A  +    
Sbjct: 167 -----SDLTEQFARIYWSMKRR---------DKVLDFGDMLSEARILLEENPAIRDRWS- 211

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                I++  +         L+  +A       +    D       +            S
Sbjct: 212 HRFRMILVDEAQDMDALQFSLVQILAEGWGN--LFLVGDDDQSIYGFRGARPGLLLDIRS 269

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                T+P   +  L       R  VK    +      R     +               
Sbjct: 270 -----TYPNAVILHLQTNYRSTRSIVKAAKRLIGHNKMRYAKSIRPDR------------ 312

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
                    K    + +    N REEA  I   LR    E    +A++   R  +  +  
Sbjct: 313 ---------KEMGRIVVRRLRNPREEAEQIGGLLRKRRGE----TAVLFRTRAQSTELIR 359

Query: 405 ELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
            L + GI   +      ++    +  + S  +          +  ++  P        + 
Sbjct: 360 VLRQEGIPFYMRRKERKVAGHWLTQDIISYCSLALGHRRREDLLRILNRPC------RQL 413

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                           +   +        L+             + +             
Sbjct: 414 PRSCIEEETFEWGELGRRLKEHPGQAKQFLELERDMAFLASSSPYAA------------- 460

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
              +   +  +      + S  G  S  D  ++ +  L  +             +E  K+
Sbjct: 461 ---LTYLLGKVGYRAFLEESYRGKRSEWDEIEMLLGILMGLARGIRG-----RGKEALKS 512

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
              +  +         A+  ++      + + E +     ++  + +     S+ L FD 
Sbjct: 513 YIKILEEERLLPEAGGAD--QYDQRRRGMGENEILAQSNNRAPPVGLFTFHGSKGLEFDQ 570

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRS 702
           + +  +NEG+ P + A+                 E    +    +       R +     
Sbjct: 571 VHIMDVNEGITPSSRARG---------------REALEEERRMFYVALTRAKREVYLYSC 615

Query: 703 LRENNIPTIASRWLQRLLVLGGTD 726
           L   N     SR+L  +      +
Sbjct: 616 LEMGNQKLAPSRFLAEIQEKDQDE 639


>gi|86608842|ref|YP_477604.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557384|gb|ABD02341.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 787

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 84/771 (10%), Positives = 198/771 (25%), Gaps = 123/771 (15%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L   +    R+  ++P     +     T +A +E++    ++  ++         L ++ 
Sbjct: 39  LTHRIAYLVRHYRVDP---GEILAVTFTNKAAREMKERIEQLFAEQEAQEQFGIPLEEL- 94

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI--SPA 143
            E   A  L S   +  +  +  +     L         +  +D               +
Sbjct: 95  -EPAQATRLKSAVYHRWIKPLW-IGTFHSLFAQILRLEIEKYQDPKGRKWTRHFSIFDES 152

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA----------ADFLKIASK 193
           +A  L K +      ++  +     +    +      W  A             +    +
Sbjct: 153 DAQSLVKEIVTKQLNLDERKFDPRSVRYAISNAKNQGWTPADLERNQPNFRGRTIAQVYE 212

Query: 194 YWTERLVELNASS-------PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
            + ++L   NA         PV       +  A    +     I++     +      L+
Sbjct: 213 IYEDQLAANNALDFDNLIWIPVQLFRQNEQVLAYWHQRFR--HILVDEYQDTNRTQYELI 270

Query: 247 STVANHPNGAI---------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
             +A +              +    D       +                          
Sbjct: 271 RLLATNGETRRSQLDWRNRSIFVVGDADQSIYRFRGADFTILLEFQETFGD--------- 321

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                  +  +D + L      +       +      +    +NT+ ++  +   ++  +
Sbjct: 322 ------GLPDDDTRTLIK----LEENYRSTATILQAANALIEKNTERIDKVLRPTRQQGN 371

Query: 358 DVALIEADNEREEAISIAIALRMSLDEN-----KKKSALITADRNLARRVKLELTRFGIN 412
            + L +AD+E  EA  +   +R    +N         A++      +R  +  L R+GI 
Sbjct: 372 PIFLHQADDEIAEAEFVVNTIRRLHGQNANAFSWGDFAILYRINAQSRPFEEVLLRWGIP 431

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
             +  G+          + + L  +    D  ++  ++  P    G              
Sbjct: 432 YTVVGGLRFYDRKEIKDVLAYLRVVANPADSFSLLRIINVPRRGIGKSTLDKLT------ 485

Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
                                          +VP W     E             +    
Sbjct: 486 -------------------------EAAAALNVPLWAILSDETSVSSLAGRSAKPVIQFA 520

Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV-CLDEHRKLPNLWFEEEGKTLSSLFSKI 591
            L+ +   + S     ++ +        L+++                E    +  F + 
Sbjct: 521 QLIQHWHRQASQTSAATLIEGLLRDSGYLEDLKAQGTDEAEERAANVMELYNAARQFEEE 580

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            E  S            ++ +     +    E +  + ++    S+ L F  + L G+ +
Sbjct: 581 QEDPS--------LEAFLSNVSLASDLDNLQEGAEKVSLMTLHSSKGLEFPVVFLVGVEQ 632

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE----N 706
           G++P   A              L+       +    +      R  L  + +       N
Sbjct: 633 GLFPNFRA--------------LEDPAALEEERRLCYVGITRAREQLYISHARERMLYGN 678

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
             P I S +L  L      +       RG      +     +       RP
Sbjct: 679 REPAIPSVFLSELP----QELIIEFDGRGAVSRQLSHGSGLSLSDAPKARP 725


>gi|296125503|ref|YP_003632755.1| hypothetical protein Bmur_0453 [Brachyspira murdochii DSM 12563]
 gi|296017319|gb|ADG70556.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563]
          Length = 276

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 84/281 (29%), Gaps = 38/281 (13%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR-TDRGTLFHNIITELIKKRINK 826
            + +S   +   +  P       I         K+  +     G   H    E  ++R  +
Sbjct: 7    QRFSEYSMSTYLLCPRKYRYTYI--EKPFKKQKRSVNVYFIFGNAIHLTCKEFYEQRAEE 64

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHI--DIIWRHLFHK---ISHSFLEHEEKIQSSIEKI 881
             T      +  I  + +++  +          + L  +   +  +F        S+    
Sbjct: 65   RT---LENLYTIFRNVWKRSGIRAFFNSREEEKELGERGLYMLSNFFNS----FSNKVPY 117

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETAQKLIDPQLS 938
             +    +  +      L G  DRIDL   G + I DYKT       +    +     QL 
Sbjct: 118  KMESYMENRV--RDYILFGRIDRIDLSADGTLQIVDYKTTKYYDVGEDNDERDRKTIQLK 175

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
            L A  L    F       V +  Y              +  K+   E + +S+  L E  
Sbjct: 176  LYACILDGLKFK------VTSGSYYH-----------FEDDKFDTVEFTPESINYLREWF 218

Query: 999  TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYDI 1039
              + +  +   +  +   +     ++  L +  E     D+
Sbjct: 219  DEIVDDIRYDRAFDKKVGRHCEFCDFFKLCQGKE-DNVQDL 258


>gi|220915236|ref|YP_002490540.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953090|gb|ACL63474.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 797

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 70/686 (10%), Positives = 163/686 (23%), Gaps = 89/686 (12%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T +A  E+R     + G  +  L  +++           +   +  L+P  + 
Sbjct: 62  HVLAVTFTNKAAGEMRERLERLLGPLAREL-WVQTFHAFGARFLRREAARA-GLSPSFAI 119

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                +L RL+    ++L     +      +   I       L          ++     
Sbjct: 120 YDDDDQL-RLVKGLLSELGLDEGEGLTPRQVLSQIDRWKNQALRAA------EVKVAGLD 172

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E                     K     + + L    A       +  +R   E     
Sbjct: 173 PEAART-----------------KEVYHRYEQALARAGAVDFGDLLLRPVRLLEEDAALR 215

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
               G    +++     + P   RL+  +        V+   D       W      +  
Sbjct: 216 ARWAGRFRYLLVDEFQDTNPVQYRLLQLLTGPRRNVCVV--GDDDQAIYRWRGADVSNIL 273

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G    ++                   R
Sbjct: 274 GFDGDFP--------------------------GTKVVKLEQNYRSTRTILDAAHAVISR 307

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR--MSLDENKKKSALITADRNL 398
                + ++       + +AL+  ++E  EA  IA A+        +  + A++      
Sbjct: 308 ARRRRDKRLWTESGAGAPLALLVGEDEHAEAERIARAVAAERGRGTSGDEIAVLYRTNAQ 367

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  +    I   I  G             + L         + +  +V  P    G
Sbjct: 368 SRPLEAAMRAARIPYVIVRGTSFYERAEVRDAAAYLRLALSPASDLDLERVVNRPPRGIG 427

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                  RA                     + L L     +++        +R +  +  
Sbjct: 428 DKTVERLRAHA-----------------AARGLPLVEAVAERDAVAELKPAARRALAEFH 470

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
             V  +   +  +   V  +     +     + +         ++      R        
Sbjct: 471 ALVTGLAADVPALDAGVAVQEVLKRSGMLARLEE---------EHTDEAVERAENLAELV 521

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
              +      +     G   +         + + I              + ++    ++ 
Sbjct: 522 AAAREFDESIAGEPPPGDPEEVRPPPLARFLEQ-IALLGEADAATPEGRVALMTLHAAKG 580

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F+ + L G+ +G  P         +      L+ +    Y+G       +        
Sbjct: 581 LEFEAVFLAGMEDGTLPYERPWADQTASERDESLDEERRLCYVGMTRAKRRLTISLARRR 640

Query: 699 YTRSLRENN-IPTIASRWLQRLLVLG 723
                   +      SR+L+ L    
Sbjct: 641 IGYGENGPSYRNMEPSRFLRDLPPEL 666


>gi|313126060|ref|YP_004036330.1| hypothetical protein Hbor_13020 [Halogeometricum borinquense DSM
            11551]
 gi|312292425|gb|ADQ66885.1| hypothetical protein Hbor_13020 [Halogeometricum borinquense DSM
            11551]
          Length = 301

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 50/303 (16%)

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR-IN 825
              + S S +      P     R +  ++     +   +   +GT++H  I ++ K     
Sbjct: 3    QESLSPSRLANYATCPRLYDYRYVQDVNAPDRTELYLN---QGTIYHETIEDVCKATNRG 59

Query: 826  KNTPEINHLMKQIIDSHFEKENLP-----PHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
             +   I+    +I D+ +++ + P            R        SF   +  +     +
Sbjct: 60   DDPEVIHERAMRIFDAKWDEHSTPDDYESAAHQEYQRAENRAAIESFFAPDGGVGIDHAR 119

Query: 881  --IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY--KT---------------- 920
              I      +  ++  G  L G AD +     G + I DY  KT                
Sbjct: 120  CSIATECWVECEVDGRG--LHGKADNVIRTDDG-LHIFDYKRKTHGMLSDGTAEYLGDHL 176

Query: 921  -GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ-KFKIDCITNDK 978
             G+  + +  +     Q +     +K   F + D  ++   FY  L    F+      D 
Sbjct: 177  DGEAHEPKRVRNAF--QTAAYIEGVKNEPFYE-DGMEIRFSFYGLLNSTSFESTPTGYDV 233

Query: 979  KKYSAD----ELSEKSLKNLIEIVTLLQNGEQPFISHLRL----SEKSNIQSEY-----D 1025
                      E+ E     +  ++    +G              SE++    +Y     D
Sbjct: 234  SARGWGRETTEIYEDHYDTIWALIRAAHDGITGETYGPEPFDLISEEACPDCDYREMCAD 293

Query: 1026 HLA 1028
             LA
Sbjct: 294  RLA 296


>gi|328950824|ref|YP_004368159.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
 gi|328451148|gb|AEB12049.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
          Length = 716

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 76/711 (10%), Positives = 169/711 (23%), Gaps = 113/711 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPV 103
            +     T +A  E++     + G  +  L  + +                         
Sbjct: 53  EILAVTFTNKAAGEMKERLARMVGPAAREL-WVSTFHSAALRILRVYGEYIGLKPGFVVY 111

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               +L  L  ++     +                                +ID I+   
Sbjct: 112 DEDDQLALLKEVLGGLGLETRPQYA------------------------RGVIDRIKNRM 147

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              +       +  G    L  + +    + +  R+  L A       + ++     H  
Sbjct: 148 WSVDAFLREAEDWVGG---LPKEQMAAVYQAYEARMRALGAVDFNDLLLKVIGLFEAHPE 204

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I +     + PA  RL   +A      +V+   D       +      +
Sbjct: 205 VLHRVQQRARFIHVDEYQDTNPAQYRLTRLLAGAERNLMVV--GDPDQSIYGFRNADIHN 262

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       +P   + +L                                   +   
Sbjct: 263 ILNFEK-----DYPDARVYRL---------------------EENYRSTEAILRVANAVI 296

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADR 396
            +N   LE  +  ++     V L  A + REEA  +A  ++      ++  + A++    
Sbjct: 297 EKNALRLEKTLRPVRSGGDPVFLYRAPDHREEAAFVAREVQRLKGRGRRLDEIAVLYRTN 356

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++    R  + + I  G+          + +   A     D +A+  ++  P   
Sbjct: 357 AQSRVLEEAFRRQNLGVRIVGGVGFYERREVKDVLAYARAAVNPADDLAVKRVLNVPARG 416

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G               V+                   R A +           R     
Sbjct: 417 IGQTSLAKLSQLAETARVSF--------------FEALRRAGEVLARPQAQAVQRFVALI 462

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
           + LA    D        LV  +T            D         + +           W
Sbjct: 463 EGLANAAYDTGPDAFLRLVLAETGYADMLRREP--DGEARLENLEELLRAARE------W 514

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            E+   T++    ++  T    +                         +  + ++    +
Sbjct: 515 EEQHAGTIADFLDEVALTARAEEPEGE-------------------VPAEAVTLMTLHNA 555

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANG 693
           + L F  + + G+ EG+ P  ++         +  L      +   +            G
Sbjct: 556 KGLEFPVVFIVGVEEGLLPHRSSTARVEDLEEERRLFYVGITRAQERLYLTLSEERETYG 615

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
            R  +         +  I   +LQ L   G            +     +  
Sbjct: 616 RREAV----RASRFLEDIPEAFLQPLSPFGEPLGAGREPVAVRPTRRSSAA 662


>gi|119486317|ref|ZP_01620376.1| hypothetical protein L8106_16724 [Lyngbya sp. PCC 8106]
 gi|119456530|gb|EAW37660.1| hypothetical protein L8106_16724 [Lyngbya sp. PCC 8106]
          Length = 194

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 60/181 (33%), Gaps = 13/181 (7%)

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
              S +++      P A Y +    L     FK        G   H  +  +        
Sbjct: 3   YPLSATKLLDYHRCPQAYYFKYERGLKANAFFKSPL----LGKALHAALARIYGDWNYTE 58

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN--I 885
                  ++        +         +   +     + ++     ++   + + V   I
Sbjct: 59  PKPSLDWIRFCWQRVNHELTPELSTQGLE--ILESYYYQYIAILPALR---KPVAVEGKI 113

Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
            A++ + +I   ++G  DR+D    G +++ DYK+    +     + ID QL L   AL+
Sbjct: 114 QARLNLCNIEFKISGRYDRLDWRDDG-LELIDYKSSRKIRDFEPDE-IDLQLGLYYLALE 171

Query: 946 A 946
            
Sbjct: 172 Q 172


>gi|294628485|ref|ZP_06707045.1| RecB family exonuclease [Streptomyces sp. e14]
 gi|292831818|gb|EFF90167.1| RecB family exonuclease [Streptomyces sp. e14]
          Length = 262

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 71/235 (30%), Gaps = 27/235 (11%)

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK----------ENL 848
             +K  +   RGTL H ++  L      + TP     +                    ++ 
Sbjct: 12   PEKPSEAATRGTLVHAVLERLFDAPAAERTPPRAKALIPGQWDRLRASRPELVELFADDA 71

Query: 849  PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908
                   W     ++   +   E    S +E     +  +  + S G+ L G  DR+D+ 
Sbjct: 72   DGERLARWLSEAERLVERWFTLE--DPSRLEPAERELFVEAELAS-GLRLRGIIDRVDVA 128

Query: 909  KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
             +G V I DYKTG  P+     +    Q+   A  +       +       L  + L   
Sbjct: 129  PTGEVRIVDYKTGKAPRP-EYAEGALFQMKFYALVVWR-----LKKVVPRRLQLVYLGSG 182

Query: 969  FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
              +                E+  + L  +   ++   +      R ++      +
Sbjct: 183  DVLTYDPVPAD-------LERIERKLHALWEAIRLATETGDWRPRPTK-LCGWCD 229


>gi|116202273|ref|XP_001226948.1| hypothetical protein CHGG_09021 [Chaetomium globosum CBS 148.51]
 gi|88177539|gb|EAQ85007.1| hypothetical protein CHGG_09021 [Chaetomium globosum CBS 148.51]
          Length = 973

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 60/586 (10%), Positives = 146/586 (24%), Gaps = 63/586 (10%)

Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATA 243
              L+     + + L   N        +  +R   +     +    ++I     +     
Sbjct: 173 LRELETCFDEYQKHLETSNLLDYDDLLVNCVRLLRKFPSCVSNIQTVLIDEYQDTNGIQY 232

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            LM   A H     +    D       W +   K+          +              
Sbjct: 233 DLMKLFAQHRQR--ITTVGDPDQSIYGWRSAEIKNLWKMLREFPKTD------------- 277

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                          E Y  S  I    L     D      +     N         L  
Sbjct: 278 ----------EVSLEENYRSSQSILDLSLEVIQQDQARYQKVLKPTHNKGPRP---VLRR 324

Query: 364 ADNEREEAISIAIALRMSLDENKK-----KSALITADRNLARRVKLELTRFGINIDISAG 418
             +   EA  I   +R  L  +         A++     L+R ++  L + G+   +  G
Sbjct: 325 LKSASAEADWIVSEVRRVLVMSGSMLRHNDVAILVRSAALSRHIEASLGKAGVPYRMVGG 384

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL-VALR 477
           +         ++   L AI +  +  A+A ++  P    G         +          
Sbjct: 385 LKFYERAEIKVIIEYLRAIHQPENNDALARILNVPQRGIGPDTIKALLEEAETSSLSVWD 444

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                          + + A Q+ +  +      + +   + +      +++ I  L+T 
Sbjct: 445 VLSKHCRGDRRAKTKITKQAEQRVSGGLLRLLQDIRKRIADASESAPFGLVEMIQHLLTK 504

Query: 538 KTNKNSTCGNLS-ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
              +    G+     D  +      + + L           +EE        ++  E G 
Sbjct: 505 LNFEKYLQGSYPDPDDHAQRWANVQEFLSLAGEFAHELELSDEESLPEIEGLAQTKEDG- 563

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                   ++  ++   + +T     E +  + I     ++ L +  + +  + +G  P 
Sbjct: 564 ----VLPRFLANVSLASETQTGADGQESNPPVTISTIHAAKGLEWPIVFIPAVYDGSIPH 619

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTR---SLRENNIPTIA 712
             + +                     +    +      +  L  +    +   +      
Sbjct: 620 MRSDD------------------GDEERRLLYVAMTRAQSLLYLSCPLFASNGHGERHEL 661

Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
           S ++  +            +          R+     +  +   P 
Sbjct: 662 SPFVDPVKASFMPKGPCLDRPVMTEIARILRRELPPEETIYQDLPA 707


>gi|54310566|ref|YP_131586.1| DNA-dependent helicase II [Photobacterium profundum SS9]
 gi|46915009|emb|CAG21784.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           SS9]
          Length = 724

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/609 (9%), Positives = 139/609 (22%), Gaps = 128/609 (21%)

Query: 166 WEDLHALKNEKYGM--------------WWLLAADFLKI--------------------- 190
            +D + L ++                   W        I                     
Sbjct: 108 PDDFNILDSDDQMRLLRRLIKAQNLDEKHWPARQAAWYINGKKDEGLRPANIDAFNDPVE 167

Query: 191 -----ASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIP 240
                    + E              +       ++       +     I++     +  
Sbjct: 168 KTWLRIYTAYQEACDRAGLVDFAELLLRAFELVRDNKHIREHYQARFKHILVDEFQDTNN 227

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                +  +A       V+   D       W     ++      + T ++          
Sbjct: 228 IQFAWLRLMAGV--DCNVMIVGDDDQSIYGWRGAQVENIQRFLRDFTNAS---------- 275

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                           S  +              +     N + +  K+    +    ++
Sbjct: 276 ----------------SIFLEQNYRSTGNILNAANELIANNNERMGKKLWTDGEDGELIS 319

Query: 361 LIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISA 417
           L  A NE +EA      ++   +E       +A +      +R ++  L + G+   I  
Sbjct: 320 LYSAFNELDEARFAVGKIKEWRNEKGGSLSDTAFLYRSNAQSRVLEEALIQAGLPYRIYG 379

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
           G+            + L  +   ND  +   +V  P    G       R           
Sbjct: 380 GMRFFERQEVKDSLAYLRLMANRNDDASFERVVNTPTRGLGDRTLETIRLA--------- 430

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                                 ++ +      S    E++ LA    + + + I  +   
Sbjct: 431 ---------------------ARDRSVTMWQASVSLLEEQVLAGRAANSLRRFIELVNAL 469

Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
           + +           D  + +            +    +   EE  T +  F    E    
Sbjct: 470 EDDTRDLPLFQQTDDVIRNSGLRAMYEQEKGEKAQARIENLEELVTATRQFVVPEEAEEM 529

Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                      ++            +    + ++    ++ L F  + + G+ E      
Sbjct: 530 TP-----LAAFLSHAALEAGEGQADDFEDAVQLMTMHSAKGLEFPIVFMVGVEE------ 578

Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN----NIPTIAS 713
                F S     ++     E+ +        M    + L  T +        +     S
Sbjct: 579 ---GMFPSSRTTEEVGRLEEERRLCYVG----MTRAMKKLYITYAEMRRLYGKDNFHKPS 631

Query: 714 RWLQRLLVL 722
           R+++ +   
Sbjct: 632 RFIREIPTE 640


>gi|90414255|ref|ZP_01222235.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           3TCK]
 gi|90324702|gb|EAS41243.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           3TCK]
          Length = 724

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/609 (9%), Positives = 138/609 (22%), Gaps = 128/609 (21%)

Query: 166 WEDLHALKNEKYGM--------------WWLLAADFLKI--------------------- 190
            +D + L ++                   W        I                     
Sbjct: 108 PDDFNILDSDDQMRLLRRLIKAQNLDEKHWPARQAAWYINGKKDEGLRPANIDAFNDPVE 167

Query: 191 -----ASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIP 240
                    + E              +       ++       +     I++     +  
Sbjct: 168 KTWLRIYTAYQEACDRAGLVDFAELLLRAFELVRDNKHIREHYQARFKHILVDEFQDTNN 227

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                +  +A       V+   D       W     ++      +   ++          
Sbjct: 228 IQFAWLRLMAGV--DCNVMIVGDDDQSIYGWRGAQVENIQRFLRDFANAS---------- 275

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                           S  +              +     N + +  K+    +    ++
Sbjct: 276 ----------------SIFLEQNYRSTGNILNAANELIANNNERMGKKLWTDGEEGELIS 319

Query: 361 LIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISA 417
           L  A NE +EA      ++   +E       +A +      +R ++  L + G+   I  
Sbjct: 320 LYSAFNELDEARFAVGKIKEWRNEKGGSLNDTAFLYRSNAQSRVLEEALIQAGLPYRIYG 379

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
           G+            + L  +   ND  +   +V  P    G       R           
Sbjct: 380 GMRFFERQEVKDSLAYLRLMANRNDDASFERVVNTPTRGLGDRTLETIRLA--------- 430

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                                 ++ +      S    E++ LA    + + + I  +   
Sbjct: 431 ---------------------ARDRSVTMWQASVSLLEEQVLAGRAANSLRRFIELVNAL 469

Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
           + +           D  + +            +    +   EE  T +  F    E    
Sbjct: 470 EDDTRDLPLFQQTDDVIRNSGLRAMYEQEKGEKAQARIENLEELVTATRQFVVPEEAEEM 529

Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                      ++            +    + ++    ++ L F  + + G+ E      
Sbjct: 530 TP-----LAAFLSHAALEAGEGQADDFEDAVQLMTMHSAKGLEFPIVFMVGVEE------ 578

Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN----NIPTIAS 713
                F S     ++     E+ +        M    + L  T +        +     S
Sbjct: 579 ---GMFPSSRTTEEVGRLEEERRLCYVG----MTRAMKKLYITYAEMRRLYGKDNFHKPS 631

Query: 714 RWLQRLLVL 722
           R+++ +   
Sbjct: 632 RFIREIPTE 640


>gi|226938999|ref|YP_002794070.1| UvrD [Laribacter hongkongensis HLHK9]
 gi|226713923|gb|ACO73061.1| UvrD [Laribacter hongkongensis HLHK9]
          Length = 710

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 61/695 (8%), Positives = 164/695 (23%), Gaps = 131/695 (18%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           ASV     T +A +E+++    +      ++  I +   +              L    +
Sbjct: 53  ASVLAVTFTNKAAREMQTRVGAMLPVNPRMM-WIGTFHGLAHRLLRLH-HRDAGLPATFT 110

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            +    +LA +  + +                             + L   I+  + +  
Sbjct: 111 ILDSQDQLAAIKRLLKALNLSDDTYPP------------------RQLMQFINRHKEQGL 152

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
           + + + A                L    + +  +             +A       +   
Sbjct: 153 RPDRVQAASAFDGR---------LIDIWREYERQCRREGVVDFAELLLASFELLTGNEAL 203

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +     + +  +A     A +    D       +      + 
Sbjct: 204 RAHYQSRFNQILVDEFQDTNRLQYQWLRCLAG--PAATLFAVGDDDQSIYAFRGAEIGNM 261

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
           +    +                                  +              +    
Sbjct: 262 HDFLRD--------------------------YHITEPVRLEQNYRSTGTILDAANAVIA 295

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI--ALRMSLDENKKKSALITADRN 397
            N   L   +         + +    N+ +EA  +A    LR          A++     
Sbjct: 296 HNHGRLGKSLWTDDAAGEAIRVYRGWNDADEAEFVAEEVRLRRREGVELSDMAVLYRSNA 355

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L + GI   +  G+            + L  +   +D  A+  ++  P    
Sbjct: 356 QSRALEHALFQAGIAYRVVGGLRFFERQEIKHALAYLRLVASPDDDNALLRVINVP---- 411

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                       +  +++   +   ++  T +     R      
Sbjct: 412 -------------------------ARGIGARTVESIQAHAREAGTSLWQAACRTGGRAA 446

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                 V  I                                 L +  +D          
Sbjct: 447 ASVGRFVQLIESLQGDAARLDFAG-------------------LVSHIIDASGLRALYQA 487

Query: 578 EEEGKTLSSLFSKIIETGSCIKAN--AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
           +++G        +++      + +  A    + +T               + L ++    
Sbjct: 488 DKDGADRLENLDELVNAAVGFQPDDPAQTVTEFLTHAALEAGDHEATPGETALTLMTVHA 547

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L FD++ + GL EG++P   + +       +  L                 +    R
Sbjct: 548 AKGLEFDSVFVTGLEEGLFPHEQSFSDPDGLEEERRL-------------MYVAITRARR 594

Query: 696 HLIYTRSLRE----NNIPTIASRWLQRLLVLGGTD 726
            L  + +        +   + SR+L  + +     
Sbjct: 595 RLTLSCAQSRMLHGQSRYPLPSRFLDEIPLPLLAP 629


>gi|108803668|ref|YP_643605.1| ATP-dependent DNA helicase PcrA [Rubrobacter xylanophilus DSM 9941]
 gi|108764911|gb|ABG03793.1| ATP-dependent DNA helicase PcrA [Rubrobacter xylanophilus DSM 9941]
          Length = 694

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 81/728 (11%), Positives = 174/728 (23%), Gaps = 119/728 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T +A  E++     + G+++  +  + +          A              
Sbjct: 39  EVLAITFTNKAADEMKERVALLVGQEARRM-WVSTFHSFCARLLRAHAERL--------G 89

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            +R   +       R  +   I +L  +     P S              I   +     
Sbjct: 90  YRRGFTIYDQGDGVR-LVKRCIVELGKDPKRFNPRSFQAQ----------ISDAKNRLLG 138

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-----EAE 220
            +D                   +      + +RL E NA       +  +       E  
Sbjct: 139 PDDYLRHTEGYVAE-------NVAEVYGLYQQRLYENNAMDFDDLIMQTVALFELFPEVR 191

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I +     +  A  RL++ +A       V+   D       W     ++  
Sbjct: 192 ERYQERFRYIHVDEYQDTNHAQYRLVNILAARHRNLCVV--GDDDQSVYSWRGADIRNIL 249

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P+  + KL       +  ++    V      R                 
Sbjct: 250 DFE-----RDYPEARVVKLEQNYRSTQTILEAANAVVANNASRKAK-------------- 290

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--SALITADRNL 398
                  ++    +    + +  A +E  EA  +   +R  LD   +    A+       
Sbjct: 291 -------RLWTAGEEGEPIRVFAAGDEYAEARFVVSEIRRLLDGGARPSEVAVFYRTNAQ 343

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L R GI   +  G+            + L+ I    D +++  +   P     
Sbjct: 344 SRALEDVLVREGIPYQVIGGLRFYERAEIKDAMAYLSVIANPADDVSLERIANVP----- 398

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        L +  L R+      T    ++S    E   
Sbjct: 399 --------------------------KRGLGATSLGRLQEHARRTGSALYESLAEPEAAG 432

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           L+             L           G +  ++  +  +          +R        
Sbjct: 433 LSGRAARAC----GQLRELFEGWRVAAGEVGPAELVEAVI------SESGYRDELEAERT 482

Query: 579 EEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            E +       ++I      +           +                 ++ ++    +
Sbjct: 483 VEAEQRLDNLEELINAARAYEMADPEPSLEGFLQEQALYSEQDALDTGGGSVTLMTLHNA 542

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + + G+ EG +P   + +                E+           A  +  
Sbjct: 543 KGLEFPHVFIVGMEEGTFPHARSLDEQ------------NLEEERRLCYVGITRAMRSLT 590

Query: 697 LIY--TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
           L Y   RS      P + SR+L  +                       R+       P  
Sbjct: 591 LSYARVRSSWGEREPRMPSRFLSEIPERFKAGGPSGGGWGLLARGRRRREEVAPPPVPFR 650

Query: 755 KRPKPFPP 762
              +    
Sbjct: 651 AGERVRHA 658


>gi|257790997|ref|YP_003181603.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
 gi|257474894|gb|ACV55214.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
          Length = 1165

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 75/839 (8%), Positives = 177/839 (21%), Gaps = 80/839 (9%)

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIA 233
                      +  +  +                +  + A           +     +++ 
Sbjct: 301  PLASELMALAREVTARFEGAKRAACKLDNDDLLVRTLDAFERCPDIAARYERRFKLVMVD 360

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS-TNITSSNTTYSTHP 292
                +      +++ +A  P  A +    D       +             +        
Sbjct: 361  EFQDTSQLQIDMIARLAG-PRCAHLCTVGDAQQSIYRFRGADVNVYEAHKKAMRADEVGA 419

Query: 293  QYS-LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
             Y  L K           V R+   S       M +  +   P         I       
Sbjct: 420  LYVELTKNFRSHGDVLSFVDRVFEQSTVFGEAFMSLEPNEQRPSCYRGSAPRIDLVLSVQ 479

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                 + V   +A     EAI+   A             ++    + A      L   G 
Sbjct: 480  PAGRGTGVRTADAKRAGAEAIARRFAALREDGHAPGDMVVLLGKMSRAGMYAEALRAEGF 539

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
               ++ G   ++     ++   + A+    +  A+  ++   + +    +  +   +   
Sbjct: 540  ECVVTGGSLFASAPEVRVVARFVEALANPANTAALFEVLTSDMMRLSADDLLVLTTEEDP 599

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW-------------------QSRL 512
            E   +R          L S          +   +                      +S  
Sbjct: 600  ETGCVRRRDLDRGFARLASRADGLPPRLAHAVRLFERARDESRTRPVATVVRDAVVRSGW 659

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNS-----TCGNLSISDWTKLTVTCLQNVCLD 567
                +E            +  +      +            +++D   + +         
Sbjct: 660  MARLEEEGAAGTARAANVLKAVRLVDRLETERHLGLASTARALADELAVGLKEAPGALSG 719

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID----IITRLIDGETVKPKIE 623
                +  +      K L      + +       +    ++    I    +          
Sbjct: 720  AGGDVVKIMTIHASKGLEFPVVALADFADARAGSGKLLVETCGAIARASLAPAASLEAFP 779

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN--PFLSRVMQSDLNLKTAEKYI 681
            + +             + D L    L EG      A           ++ L  + A++ +
Sbjct: 780  QLAKRSGAAAAGDGEDDADLLAARRLVEGEDGPACALGASSCTQAAYRAQLARRAADEEL 839

Query: 682  GQAAH-DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL--------------GGTD 726
             +A    +         +      +         +   +  +                  
Sbjct: 840  AEARRKLYVGLTRASEALVVAMDAKAPSAGKPPAYAPLVDDIRSALCGDGDFPEGVAELP 899

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
            +      R +  L    +            P+ F        + S      L  D    Y
Sbjct: 900  YGGTAPARFERILVQPPEPRAEEGVEPAPEPRLFFVPVVDDASRSTLFAGGLARDDAFSY 959

Query: 787  ARRILKLDFIPHFKKDPDRTD------RGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
            +         P  +  P   D       G+ FH      ++                   
Sbjct: 960  SSIAPNPLPAPADEGVPFAADADKATDLGSAFHRAAQLAVETGRVPGAA----------- 1008

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEE-KIQSSIEKIFVNIPAKMAIESIGIHLT 899
                  +    +    R         +                  +P  + I    +   
Sbjct: 1009 -RLGVLSEAYALSTGQRARLADACERWFSSATYAETLQWGLRRAEVPFFVPISDAFVE-- 1065

Query: 900  GFADRI----DLLKSGFVDITDYKTGDN--PKKETAQKLIDPQLSLEAAALKAGSFSQI 952
            G  D +      L      + DYKTG +     E  +     Q    A AL      ++
Sbjct: 1066 GEIDLLCTDDAQLAGARALVVDYKTGGSDGEAPEALRSKHLLQAQCYAYALLRQGCVEV 1124


>gi|325912576|ref|ZP_08174959.1| putative ATP-dependent nuclease subunit B [Lactobacillus iners UPII
           60-B]
 gi|325477997|gb|EGC81126.1| putative ATP-dependent nuclease subunit B [Lactobacillus iners UPII
           60-B]
          Length = 1157

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 100/891 (11%), Positives = 238/891 (26%), Gaps = 135/891 (15%)

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
           DL+++ +E            L+I    + + L +    +       +++   +  +    
Sbjct: 138 DLNSISHEAVTEETSRKLHDLQIIYDEFIKMLGDH--FTTKDGIQLILKTVLDKKLSIDN 195

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
                 G +    +   ++  +A   + ++                  +   N       
Sbjct: 196 MNFFFCGFSYFSLSELNIVKIIAKKAHLSVFAF------------KTKDAQINDKVMEGD 243

Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
           Y    Q ++AKL++F ++            N        ++  +               N
Sbjct: 244 YDYIVQSTIAKLINFFNVNSLKFSTKEYGYNINLNNKEKLNAIWT-------------GN 290

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL 404
                    + V LI+AD+   E   +A  +   +       K   ++  + +       
Sbjct: 291 IPQQGLDLTNYVHLIKADSRYAEINFVAQTIYQQVVFNHYRYKDFLVLAPNLSEYETYLT 350

Query: 405 -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPE 461
              ++  I++       +       ++ ++ +          I T++K  L   ++   +
Sbjct: 351 PIFSQNNISMFNDLQKQMKFHPLVVLIENIADINDMGFKTQDIITILKTRLLIPEWYTDD 410

Query: 462 KYLSRAKNALELVALRGNKNSYDI----MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                  + LE   L  N N         D     +  +              +   E+ 
Sbjct: 411 IKFIADVDLLENFVLAHNINHQLWKKSFYDFVDNNISHLDQINEKVEKLDKLRQFIIENI 470

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +  +  +  +      + ++         N  +  W        ++  ++          
Sbjct: 471 DNLITQLHKLTNVQEAVTSFWDFLLKNQINKKLEKW--------RDTAINNGDLQLAQQP 522

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           E+    L+ L    +      + N   + DI+                  + +      +
Sbjct: 523 EQIWALLNKLLKDYVLIAE--EFNTENFFDILISGFSEANFSQIPSVLDAVTVSEIGMVQ 580

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY-----------IGQAAH 686
             +F  + + G      PK   K  FL+    ++LN    ++            + Q   
Sbjct: 581 NNSFKQVFIIGAVNNSLPKIQNKPGFLNIENINELNNSIDDEQQYIENNQEVNNLDQTYQ 640

Query: 687 DFEMANGTRH-LIYTRSL-RENNIPTIASRWLQRLLV--LGGTDFFDNLKKRGQCYLDW- 741
             ++ +     +  +  +   +N    AS + Q +            +L +  Q  L + 
Sbjct: 641 FGDVLSLASDGVYISYPIINVSNEKMEASIFYQDIKNTLNLTEYVQHDLPENQQQLLSFI 700

Query: 742 -------------------------------TRKLDYTTKQ-------PHYKRPKPFPPL 763
                                             L     Q       P    P     L
Sbjct: 701 TTPQASLGYIVYLKNKTNDDISNLLALTPSNQALLFDNVIQASSFKNKPVNLTPALAQEL 760

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                  S S+++    + Y  +    L L     F+ +      G  +H  +  L+K  
Sbjct: 761 YGNNINISISQLETFYANSYEYFLTYGLHLHKR--FENELTNIQSGNYYHETMDRLVKYL 818

Query: 824 INKNTPEIN------HLMKQIIDSHFE-----KENLPPHIDIIWRHLFHKISHSFLE--H 870
                           ++   I    +     +E L    +        + +   +   H
Sbjct: 819 KQHKLDFAELTKDKISVILANIQDELKTKGSYRELLGDPFNEFLFKCLDRTTKKVVNYWH 878

Query: 871 EEKIQSSIEKIFVNIPAKMA--IESIG------------IHLTGFADRIDLLK--SGFVD 914
           +   Q+    ++  +       I  +             I L G  DR+DLLK     + 
Sbjct: 879 QNMFQTKFCPLYSELSFGNKEYIAGLSYQFIDKQQKTHHISLRGKIDRVDLLKDCDNEIL 938

Query: 915 -ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG-SFSQIDCRKVANLFY 962
            + DYK+          +  I  Q+    + L+        +   +   FY
Sbjct: 939 QLIDYKSSAKKFDFNLFKNGISMQMLSYLSVLQDNSHIFSTNPVNIFGAFY 989


>gi|269468160|gb|EEZ79862.1| ATP-dependent DNA helicase [uncultured SUP05 cluster bacterium]
          Length = 1058

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 102/863 (11%), Positives = 227/863 (26%), Gaps = 164/863 (19%)

Query: 143  ANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
               +   ++L  ++  +    +  + +L               A  LK+           
Sbjct: 306  LQTLGARESLTQLLGGVNRLPDVDFSELE-------IQALQDIAQVLKLCVARLNLLFER 358

Query: 202  LNASSPVGYQIALMRAEAEHL--------MKGTKGPIIIAGSTGSIPATARLMSTV---A 250
              A   +   +    A  +          +      I+I     +  +   L+  +    
Sbjct: 359  EQAHDFIEVALRADHALDDRSNISDMALFLDYKVQHILIDEFQDTSASQFNLIKKLIFHW 418

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
               +G  +    D       +            +    +T P          L +     
Sbjct: 419  QADDGRTLFLVGDPMQSIYRFRESQVGLFLQVKAKGIANTMP--------KSLKLSTNFR 470

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                 V+        +          +   +  I ++ + N       +      +++ +
Sbjct: 471  SSKSIVAGNNRFFEKIFPHEEDVYQGAIRYSESISDSDLTNDHA----IVFHPFAHDQYQ 526

Query: 371  AISIA--IALRMSLDENKK-KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
            A +++    +  +L EN K + A++   R+    +   L   GI+ +     PL   L  
Sbjct: 527  AEAVSVLEIINNALSENPKGEIAILVRTRSHLSDIVDVLKVHGIDFESIKTNPLKDHLLI 586

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
              L SL  A+  L D +A  ++++ P              ++ L             + D
Sbjct: 587  RDLLSLTKALLHLGDKLAWLSVLRAPWCG--------LLLEDLLVFSEHDDLIIYEQLSD 638

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                              P   ++L+++ K+ A  +   +   I               N
Sbjct: 639  ------------------PKILNQLTQDGKKRAQHIAQSLSSVIN--------------N 666

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             +  D+ ++    +  + +        L  + +   +                   + + 
Sbjct: 667  QARFDFVEILTHAIDQLGIVPSLSPQELMIKNQFLQIIFDCE-------------SQQLL 713

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
             I  +           K++ + ++   +S+ L FDT+I+ GL       N          
Sbjct: 714  NIETIEATLEDLYAPSKTAQVKLMTIHQSKGLEFDTVIIPGLGRKPRSDNAPIMRMREFA 773

Query: 668  MQSDLNLK--------------------TAEKYIGQAAHDFEMANGTR-HLIYTRSLREN 706
             +S L                       + +         +      + +L    +L +N
Sbjct: 774  NRSLLLAPIKSFTDSEDSNTYNYLKFIESQQDKFETMRLLYVAMTRAKNNLHLLGALTKN 833

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
            N     S  L  L+      F D      Q  +   + LD    +              Q
Sbjct: 834  NKANAKS-LLNMLMQFYEGHFDDVDIDNQQDAI---KSLDAPKLERFTHLKSVLQEENGQ 889

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
              +                               +   ++  GTL H    +        
Sbjct: 890  GESV------------------------EYNKKFELLFKSLLGTLVHQYYEQ------GL 919

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
              P+  ++  ++I+S     +L  +   + + L      S  E   K + S     V   
Sbjct: 920  FNPDKKNVEIKLIESGISPNDLDQYAQYVIKLLDSTKQDSQFEWLFKQRES---TLVEAE 976

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET----AQKLID---PQLSL 939
                +    +      DR+ +     + I D+KT      E+     Q+       QL  
Sbjct: 977  F---VNGDTVI---AIDRLFIDDD-VLWIIDFKTASLLDDESESQFVQRQKSEHTKQLLF 1029

Query: 940  EAAALKAGSFSQIDCRKVANLFY 962
                L       I    +    Y
Sbjct: 1030 YQEVLSK-----IYPNNIKCALY 1047


>gi|171910408|ref|ZP_02925878.1| hypothetical protein VspiD_04530 [Verrucomicrobium spinosum DSM 4136]
          Length = 273

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 88/282 (31%), Gaps = 29/282 (10%)

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                P          L    +T S S +   +      Y R +LKL              
Sbjct: 5    AVPPPSKVERSEKEILTGLQQTVSASRLTLFLQCRLKFYYRYVLKLSKPKPAS-----LH 59

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
             G + H  +    K R  +    +   +       ++ +N    +D        K++   
Sbjct: 60   VGNVVHATLKAWHKARWMEAPLTLKG-LHDEFSKAWDLQNNEEPVDWQGDEEDEKLTAWR 118

Query: 868  LEHEEKIQSSIEKI----FVNIPAKMAIESIGI-HLTGFADRIDLLKSGFVDITDYKT-G 921
            L      QS  E       V +P +  + + G+  L G  D +   K     I DYKT  
Sbjct: 119  LCELYLRQSGFEHAQKPDAVEVPVEADLANHGLPRLIGILDLVQQRK-----IIDYKTSS 173

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
              P  E      + Q S+ A   +  + ++ +  ++ +L  ++LK               
Sbjct: 174  TTPNPEKVAHTHEVQTSIYAILYRDSTDTREEGMELHHL--VKLKNPKLC--------IT 223

Query: 982  SADELSEKSLKNLIEIVTLLQNG--EQPFISHLRLSEKSNIQ 1021
            +   +++     L  ++     G   Q FI    ++  S   
Sbjct: 224  ALPPMTDSQQTRLFHLLAAYLEGIARQDFIPSPGMACASCEF 265


>gi|197116744|ref|YP_002137171.1| exodeoxyribonuclease V subunit beta [Geobacter bemidjiensis Bem]
 gi|197086104|gb|ACH37375.1| exodeoxyribonuclease V, beta subunit [Geobacter bemidjiensis Bem]
          Length = 1130

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 103/1020 (10%), Positives = 247/1020 (24%), Gaps = 115/1020 (11%)

Query: 57   IQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
             + L S  I    + +     I ++    +     +   S +L        +   L  + 
Sbjct: 98   ARRLLSSAIRSFDEAA-----IFTIHGFCQRMLQDNPFESGSLCDTELVTDQGKILMEIA 152

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
              +         +    +  +  +SP + + L + +    +     +   +        +
Sbjct: 153  QDYWRINCYGQPEERIAAAGAAKVSPESLLKLVQRVCGDPNAAVIPDPPADA------NE 206

Query: 177  YGMWWLLAAD-FLKIASKYWTERLVELNASSPVGYQIALMRAEAE------HLMKGTKGP 229
               W       F         +R    N  S     + L  A          L++     
Sbjct: 207  LDDWLQGLKRGFFDYLRAELPKRKRLKNLRSFDDLLLDLHAALLRPASTLPRLIRERYQA 266

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT-TY 288
             +I     + P    +   +    + A      D       +      +    +  T   
Sbjct: 267  ALIDEFQDTDPLQFAIFDAIYPVGHEAPFFLIGDPKQAIYSFRGADIFAYMGAAQATKER 326

Query: 289  STHPQ-YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
             T  Q +     L          + L  +  ++    +  +           +    L+ 
Sbjct: 327  HTLLQNFRSEAGLIDAVNALFASRELPFLYPQIGFNKVEAAPKEKSRLVEAGQRKAPLKL 386

Query: 348  KIPNIQKCFSDVALIEA--DNEREEAISIAIALRMSLD---------------------- 383
             +   +     +   +A        A  I+  LR   D                      
Sbjct: 387  WLAPRKDAGKPINKGDAWEQLPETVAAEISRLLRDGADGKLTVEELRKDAEEGSENWVQR 446

Query: 384  -ENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                +  A++      A+ ++  LT  GI  +  SAG  L  +  ++ L  LL+A+ +  
Sbjct: 447  AVEPRDIAVLVRANRQAKLMQRALTHRGIPSVLCSAG-NLFESDEAAELLRLLSAVAQPG 505

Query: 442  DFMAIATLVKHPLAKFGFPEKYLS-----RAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                +   +   L      E           +  LE      +  +       +L     
Sbjct: 506  HESLLRGALATDLVGVSGTELARLMDDEKGWEEILEEFRSYHDTWNSGSCMSMALQFMEK 565

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
               +          R           +    +     +    +            D  ++
Sbjct: 566  REVRKRLLAEPMGERRLTNLLHAIETIHQAQVNERLGMEAVISWLACRITEEPKKDEYEI 625

Query: 557  TVTCLQ-----------------------NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
             +   +                              +    L+ +E+G+ +  + S+ + 
Sbjct: 626  RLETDEAAVQLVTIHKSKGLEYPIVFLPFCWAEYAGKDEGALFHDEDGRVVLDIGSEQMG 685

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                  A      + +   +    V     K  T    G  +    +    +L       
Sbjct: 686  EHKAQAAR-----EALAESLRLLYVALTRGKHRTYLTWGVFKDAGDSALHYLL----HPG 736

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
                  +       ++  L+   A         D   A+        R+  +        
Sbjct: 737  ETPVKGQVTLSDADIRKRLDTLAASSAGRIEVLDLPAADLAP----YRAHDKKAPDLAPL 792

Query: 714  RW---LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
             +   + R   +       + K       D         ++      +P           
Sbjct: 793  PFTGAISRDWRVASFTSLSSHKHHTAELPDRDEG--SPVEERPVHDVEPTGIFAFPKGAK 850

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            +   + ++  D         L         K     D      +++  +++  +      
Sbjct: 851  AGIFLHKIFEDLDFTRVGEQLSPLVKEQLDKHGFAPDWSQAVRDMVQNVLQAPLGDGE-- 908

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-KM 889
               L +  ++    +      +  +      + +  F         +   + +     ++
Sbjct: 909  -IALAQVGLERRLTEMEFFFPLSHVTSDRLREAAARFTAGHGTAGVAGLPVDLADLFSRL 967

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKT----------GDNPKKETAQKLIDP-QLS 938
            +   +   L GF D +     G   I D+K+          G    K+  ++   P Q  
Sbjct: 968  SFAPVQGMLLGFIDLVFEHG-GRYYIVDWKSNHLGNTPGNYGQAALKKEMEENFYPLQYL 1026

Query: 939  LEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            L   AL      +I      R    +FY+ L+            +     EL     + L
Sbjct: 1027 LYTVALDNYLRLRIPGYDYDRHFGGVFYLFLRGVDGTGNGVYADRPPR--ELIAHLAEVL 1084


>gi|197303176|ref|ZP_03168218.1| hypothetical protein RUMLAC_01899 [Ruminococcus lactaris ATCC
           29176]
 gi|197297716|gb|EDY32274.1| hypothetical protein RUMLAC_01899 [Ruminococcus lactaris ATCC
           29176]
          Length = 609

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 79/683 (11%), Positives = 176/683 (25%), Gaps = 134/683 (19%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILP-IIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            + +   T+ A  E+RS    + GK+   LP  I +   +          +         
Sbjct: 49  EILVVTFTRFAAAEMRSRLCSLMGKE--RLPVTIGTFHGIYYGILRWTYRI--------- 97

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
             + LL       I R  +     +++ E                K++A  I  I+ +  
Sbjct: 98  GQKNLLSDNEKYQILRQVIRHQKLEIFDEG------------DFLKDIAFEIGKIKNQRI 145

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL--NASSPVGYQIALMRAEAEHL 222
           + E        ++      AA F +I  +Y  +R      +    +     L  +  + L
Sbjct: 146 RPE--------EFISEKCEAAVFRQIYREYEEQRKRRRKIDFDDMLVLCFQLFLSRPDVL 197

Query: 223 M--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I+I            ++  +A       +    D       +     +   
Sbjct: 198 RGWQKKFRYILIDEFQDINQIQYDVIRMLALPERN--LFAVGDDDQAIYGFRGADSELML 255

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +   ++            L +                      S          M 
Sbjct: 256 RFKKDFPDASQIL---------LGVNY-----------------RSTSNIVTNSLKVIMH 289

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNL 398
           NT   E ++   +K    + + E  +  EEA  IA  +  S+      +  A++      
Sbjct: 290 NTRRYEKELKAERKGGPCLHIQEVKDVNEEAEYIAGEIEKSIRSGTKAEDIAVLFRTHTD 349

Query: 399 ARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
           AR V   L    +  ++   +P L     +  + +      K      +  ++  P    
Sbjct: 350 ARPVVEALLARKLPFEMKEHLPNLYEHFIAKDIQAYFRLAMKCAGRQDLLQVMNRPKRYL 409

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                   RA   +     R      D +D     +  +        + + + R+  ++ 
Sbjct: 410 SRDSLQGKRASFEILRDYYRDKDWMTDRIDQFEWDVKMMEKMTPYAAITYLRKRVGYDEY 469

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                +  H+                      +S+         +     E        +
Sbjct: 470 LKEYCISRHLKIT------------------DLSEILSELEEAAKPYETMEEWFSHIEEY 511

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            E  K                                 +    +      + ++    ++
Sbjct: 512 TEALK---------------------------------KRETGRNTPEKGIRLMTIHAAK 538

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-H 696
            L FDT+ +   NEG  P   A+        +                  +      +  
Sbjct: 539 GLEFDTVFVIQANEGRIPYKKAEKAEEIEEER---------------RLFYVAMTRAKNR 583

Query: 697 LIYTRSLRENNIPTIASRWLQRL 719
           L+++    +     + SR++  L
Sbjct: 584 LVFSYVKIKGGKEILPSRFVDEL 606


>gi|157786545|ref|YP_001491721.1| gp69 [Mycobacterium phage Bethlehem]
 gi|40769484|gb|AAR89790.1| gp69 [Mycobacterium phage Bethlehem]
          Length = 266

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 82/292 (28%), Gaps = 57/292 (19%)

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
                 + +  S S++ Q    P++    R  ++   P          +GT  H +  + I
Sbjct: 1    MEYRYEKKPRSVSQLSQFDKCPFSWKLARHERVWKRPAAW-----LQQGTGVHAVAEKYI 55

Query: 821  KKRINKNTP-----------EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI------ 863
              ++  +             E    + +  +                +    +       
Sbjct: 56   LSKLAGSPLTREECYEIFKSEYADGINEATEETPNLGWWFASGRYRGQEDIERRWDIGLQ 115

Query: 864  -SHSFLEH-------EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
                 L+        E           + +  +  ++  GI + G+ D + +L  G V +
Sbjct: 116  QVDKTLDWIDNHPSLEVWHTPDGTP-GIELAIEFELD--GIEIRGYIDAVLVL-DGEVLV 171

Query: 916  TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
             D+KTG  P         D QL++ A AL      Q+   ++    Y   K         
Sbjct: 172  VDWKTGLKP-------GDDFQLAVYALAL-----KQLYGVEITRGVYFMAKTGKPTYPYD 219

Query: 976  NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI---QSEY 1024
                        EK      ++   L+ G+  F      S          EY
Sbjct: 220  LTDWTR------EKISARFHDMERKLEAGD--FTPKPGASCARCDVALSCEY 263


>gi|255027087|ref|ZP_05299073.1| hypothetical protein LmonocytFSL_13493 [Listeria monocytogenes FSL
           J2-003]
          Length = 547

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/474 (13%), Positives = 140/474 (29%), Gaps = 33/474 (6%)

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
             L  +  L +     +       LA++   ++ EE   ED+                  
Sbjct: 97  AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKVHD 155

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           + +  + + E L   +        + L+  +        +  I+I G T        ++ 
Sbjct: 156 ISLIYQKYEELLA--DKFLENEDYLRLLAEKITDSDYLNQTEIVIDGFTSFSKQELTVIG 213

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +    +   +   L+      I + + E S    S+         Y+L +L      + 
Sbjct: 214 ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
           E+ K               ++ ++        +N                ++ + +A+N 
Sbjct: 265 EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311

Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
           R E   IA  +R         +  A++T +  +     +  +  + I   I     ++  
Sbjct: 312 RAEIEGIAREIRQLALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483
                + S L+AI     +  I   VK         +  L  R  + LE   L     + 
Sbjct: 372 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431

Query: 484 DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              + +   + R     +   +P    +  +     E+  L+V+ +      L   KT  
Sbjct: 432 WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 491

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIE 593
                     +               E +    L    E+   ++S+L  + +E
Sbjct: 492 EFALALYHYLEQVNAVERLELWRQRAEEQGYLELAREHEQAWSSISALLDEFVE 545


>gi|323341292|ref|ZP_08081537.1| ATP-dependent DNA helicase PcrA [Lactobacillus ruminis ATCC 25644]
 gi|323091286|gb|EFZ33913.1| ATP-dependent DNA helicase PcrA [Lactobacillus ruminis ATCC 25644]
          Length = 756

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 84/755 (11%), Positives = 201/755 (26%), Gaps = 127/755 (16%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT--GKKSTILPIIKSLG 82
           +L   +     +  +NP    ++     T +A +E+R     +   G ++     + +  
Sbjct: 49  VLTHRVAYLIEHQNVNPW---NILAITFTNKAAREMRERIDRLVEYGSEAVW---VSTFH 102

Query: 83  DVVEEKFTADLL-LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            +       D   + ++    + +      L + I    + L    K   P S L+   S
Sbjct: 103 ALCVRILRRDAEKVGFSKAFTIGSPSEQKTLMKHI--VADTLNLDTKQYDPRSFLASISS 160

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                             + E  + E+     N +     + AA     A + + + L +
Sbjct: 161 W-----------------KNELIEPEEALLQANAEANPMEVAAAR----AYQIYQDELKK 199

Query: 202 LNASSPVGYQIALMRAEAEHLMKGT-----KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
                     +  ++                  I +     +  A  RL++ +A      
Sbjct: 200 NQTMDFDDLIMKTIQLFESSPETLEFYQRKFRYIHVDEYQDTNEAQYRLVNMLAKGFRNL 259

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V+   D       W     ++      +   +T         +  L+      K +   
Sbjct: 260 CVV--GDADQSIYGWRGANMENILNFEKDYKDAT---------VIKLEQNYRSTKTILQA 308

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE----AI 372
           +NE+   +                  +  +  +    +    +    ADN  +E      
Sbjct: 309 ANEVIEHN-----------------LNRKDKTLWTENESGDKITYYRADNAADEGYFVIK 351

Query: 373 SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
           +I   +R     +    A++      +R ++    +  I   +              + +
Sbjct: 352 NIQKEIREKHR-SYNDFAILYRTNAQSRTLEETFVKANIPYKLVGAHRFYDRKEIMDILA 410

Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            L  +   +D M+ A +V  P    G       +    +  ++L     S D+  +    
Sbjct: 411 YLRLVANPDDSMSFARVVNEPKRGIGATSITKLQNFADMHGISLYEAGKSVDLTGIPVRT 470

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
             +I    +       +     + +     + + IL       T      +    L    
Sbjct: 471 AKKITEFCDML-----KLFHQVQKQATITEMTEQILSI-----TGYQKALNDANTLEAKG 520

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
             +     L      +    P     +                         + D +  L
Sbjct: 521 RLENLEEFLSVTKEFDENWDPEDEESD------------------------PFTDFLADL 556

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                     +    + ++    ++ L F  + L G+ EG++P   A             
Sbjct: 557 ALVSDQDGVDQNDDVVTLMTLHAAKGLEFPVVFLIGMEEGIFPLGRAAMN---------- 606

Query: 673 NLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDF 727
                     +    +         L  T +L            ASR++  +        
Sbjct: 607 ----ESDLEEERRLAYVGITRAEEKLYLTNALSRMLYGRTQQNTASRFIGEISDALLESA 662

Query: 728 FDNLKKRGQCY---LDWTRKLDYTTKQPH-YKRPK 758
            + ++     +       +K++   K+P   +RP 
Sbjct: 663 NETVRNSSYPFSSGPVAAKKVEKPRKRPGTIERPA 697


>gi|118471772|ref|YP_885718.1| exodeoxyribonuclease V subunit gamma [Mycobacterium smegmatis str.
           MC2 155]
 gi|118173059|gb|ABK73955.1| exodeoxyribonuclease V, gamma subunit [Mycobacterium smegmatis str.
           MC2 155]
          Length = 1087

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 86/778 (11%), Positives = 206/778 (26%), Gaps = 67/778 (8%)

Query: 41  PLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN 100
           P   A+  + VP K   + L        G  + +    ++   ++ E         ++ +
Sbjct: 29  PDPFATELVLVPAKGVERWLSQRLSNRLGVCAAV--EFRNPRSLIAELTGTADDDPWSPD 86

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V  +  +++ + L   W   L   +          L      A+  A+ LA +     
Sbjct: 87  AMVWPLLGVIDES-LDEPWCATLATHLGHFEMGEEYELRQGRRYAV--ARRLAGLFASYA 143

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
            +    + L         + W  A          W      ++A  P       +    E
Sbjct: 144 RQR--PQLLVDWDGLPDDLAWQKAL---------WQALCERIDADPPHIRHAKTLVQLHE 192

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                 +  + + G T        L++ +A H +  + LP     +  A+          
Sbjct: 193 SPTDLPQR-LSLFGHTRLPATEVELLTALATHHDLHLWLPHPSDTLWQALSTRKGPLPRR 251

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
             +S+     HP      LL  L     +++RL    +    R        L        
Sbjct: 252 EDTSHR-DVGHP------LLATLGRDLREMQRLLPEPDTDEFRGRSEYPDTLLGWLQSDI 304

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
             D +  +  + ++    + +        +   +   L   L ++     +   ++  D 
Sbjct: 305 AADAVRPQGRHHRREDRSIQVHSCHGPSRQIDVLREVLLGLLADDPTLEPRDILVMCPDI 364

Query: 397 NLARRVKLELTRFGINIDISAG--IPLSTTLHSSI-LTSLLNAI---------------- 437
                +       G  +  + G  I LS      + +     A+                
Sbjct: 365 ETYAPLITAGFGLGDVVPRTRGAHINLSAHPAHKLRVRLADRALVQTNPLLAVAAQLLAL 424

Query: 438 -FKLNDFMAIATLVKHPLAKFGF----------PEKYLSRAKNALELVALRGNKNSYDIM 486
                    +  L +    +  F                           R       + 
Sbjct: 425 AGGRATASEVLNLAESAPVRARFGFTDDDLDAITAWTREANIRWGFDQEHRRPYGVEFLH 484

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
           +     +DR+      +   H     +    +++   V+   +    +   +   +   G
Sbjct: 485 NTWRFGIDRVLAGVAMSDDSHAWLGTTLPLDDVSSNRVELAGRFADFVEKLRRTVDQLSG 544

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              + +W       +  + L +          E  +  +          +       +  
Sbjct: 545 TRPLHEWLDALTAGIDALALADEDWPAAQMQREFAEITAR------AGDTATSLRLADVR 598

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            ++ R + G   +    ++ TL +   +  R +    + L GL++GV+P+  A +   + 
Sbjct: 599 ALLDRHLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVFPRLGAVDGDDAL 657

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
                   +       Q   D  +   T+ L+ T +             +    ++    
Sbjct: 658 ARDPMTGERDIRSEDRQLLLD-AILAATQTLVITYTGANEYSGQARPPAVPLAELIDTLK 716

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP-KPFPPLEAQPRTYSFSEIKQLINDPY 783
                           +  D     P    P +PF   +        S  ++ +   +
Sbjct: 717 ITTEDSALDVLTRHPLQPFDKRNVIPGALVPDEPFTFDQTALVAARASSGERAMRPAF 774


>gi|219683935|ref|YP_002470318.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219621585|gb|ACL29742.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 907

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 79/688 (11%), Positives = 175/688 (25%), Gaps = 79/688 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + V     T +A  E+R     + G  +  +  + +           D            
Sbjct: 64  SQVLAITFTNKAAAEMRERLGALIGGVADRM-WVSTFHSACVRILRRDGEQIG--LKSGF 120

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK-NLADIIDIIETEE 163
            I    +  RLI +        IK   P S L+      N +  A   LA      +   
Sbjct: 121 TIYDTADCERLIKLVCADFNIDIKRFTPRSILARISDYKNQLTDASTALAQYAPDFKP-G 179

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
            +      + + +             +    +  RL   NA       +  +        
Sbjct: 180 MRHYSFGQIGDPEPV---------YAVVYAEYQYRLALANAVDFDDLIVRTVELLRTQPH 230

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I++     +  A   L+  +A          G+D H P+    T   KS
Sbjct: 231 VAEYYRHKFRYILVDEYQDTNHAQYVLVRELA----------GVDAHEPSDPMATEAGKS 280

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                +    S    Y+        +I+  +       +  +              +   
Sbjct: 281 GPAWVTVVGDSDQSIYAFRGADIR-NIQDFEKDFPDARTIMLEQNYRSTQTILDAANAVI 339

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395
             N+     K+         +    AD  + EA  IA  +    +E        A++   
Sbjct: 340 AHNSARKPKKLWTALGEGDKIIGYAADTAQLEAHWIAQQILHLHEEKGLPYSDMAIMYRA 399

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L +  I   +  G             + L AI    D + +  ++  P  
Sbjct: 400 NAQSRSLEEGLIQAHIPYQLIGGTKFYERREVKDAIAYLQAIVNPADDINMRRILNVPKR 459

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G   +                                                  + E
Sbjct: 460 GLGTRAESQLTLFANEHNQTF----------------------------------WWAIE 485

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             E    +       +       T+  +  G    S  +++    L+   + E  +    
Sbjct: 486 QLEDIEGMSARTANAVRAFRELMTSLRTFAGEHD-SKPSEIVAQVLEQSHMLELLRKSED 544

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKAN--AIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
             +E      S    +         +     +++    + D + +  +   S  + ++  
Sbjct: 545 PQDESRVENLSQLQSVAAEFEQNTPDTTLAGFLETTALVADSDQLPGEGHDSGKVTLMTL 604

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L +  + L G+ +G +P + A         +  L      +   +          
Sbjct: 605 HTAKGLEYPIVFLTGMEQGTFPHSRAMENMDELSEERRLAYVGITRAKRRLYLTRAA--- 661

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLV 721
                  R+        + S++L  +  
Sbjct: 662 ------VRAQWGRQSEMMPSQFLDEIPD 683


>gi|88808097|ref|ZP_01123608.1| UvrD/REP helicase [Synechococcus sp. WH 7805]
 gi|88788136|gb|EAR19292.1| UvrD/REP helicase [Synechococcus sp. WH 7805]
          Length = 794

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 77/770 (10%), Positives = 191/770 (24%), Gaps = 115/770 (14%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF----IEITGKKSTILPIIKSL 81
           L   +         +P   A +     T +A +E++        +   +     P   +L
Sbjct: 36  LTHRIAHLIGEHGADP---AQILAVTFTNKAAREMKERLELLLAQRLAQSQFGQP-WSTL 91

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             V + +  + +         +     L   AR++    +K  D     + +       +
Sbjct: 92  PPVEQRQLRSRIYREVTKELWIGTFHALF--ARMLRYDIDKFKDSEGLSWTKQFSIYDEA 149

Query: 142 PANAIW---LAKNL------------ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
            A ++    + + L               I   + +    + L A    +          
Sbjct: 150 DAQSLVKEIVTQELQLDPKRFEPKKTRWAISNAKNQGWLPDQLEANAEGQR-------GK 202

Query: 187 FLKIASKYWTERLVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                 + + + L   NA           Q+     +           +++     +   
Sbjct: 203 LTADVYRRYRKALAANNALDFDDLLLMPVQLLQQNEQVRGYWHRRFAHVLVDEYQDTNRT 262

Query: 242 TARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
              L+  +          ++  G  V    D       +             +       
Sbjct: 263 QYDLIKLLVTDGKDPQTYDNWTGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGDQEPD 322

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
           + +  + +  L+        +   +N +   +                 ++ ++  +   
Sbjct: 323 EAT--RTMVKLEENYRSTATILEAANALIANN-----------------SERIDKVLRPT 363

Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTR 408
           +     ++L   D+E  EA ++   LRM    N +      A +      +R ++  L R
Sbjct: 364 RGEGELISLTRCDDEIAEAEAVVHRLRMMEAANPELTWGDMACLYRTNAQSRALEESLVR 423

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
           + I   +  G+          +   L  +    D +++  ++  P               
Sbjct: 424 WRIPYVVVGGLRFYDRREIKDVLGYLRLLINPADTVSLLRVINVP--------------- 468

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                   +       I  L            +    P     L        +   + I 
Sbjct: 469 --------KRGIGKTTIQRLTDAANQLGIPLWDVVSDPEAVRSLGGRSARGLLQFCELIN 520

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                + T   ++        I    +L+    + +              +E       +
Sbjct: 521 GLRERVSTTPPSEL-------IQQVMELSGYVSELITEGSDEAEERRRNLQELVNAGLQY 573

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            +  E G      A                  K   +  + ++    S+ L F  + L G
Sbjct: 574 QEENEEGDLEGFLASA--------ALASDADSKDTAADRVTLMTLHSSKGLEFPVVCLVG 625

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
           L +G++P   + +   S   +  L      +   +        +          +R    
Sbjct: 626 LEQGLFPSYRSLDDPASLEEERRLCYVGITRAKERLF-----LSHASERRLWGGMR---E 677

Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
           P + S +L  L                        +L    ++     P 
Sbjct: 678 PAVPSVFLSELPEALVQGEIPRSGGAAIRREQRLDRLTRVDREQPSSAPA 727


>gi|325912135|ref|ZP_08174533.1| putative ATP-dependent nuclease subunit B [Lactobacillus iners UPII
           143-D]
 gi|325476085|gb|EGC79253.1| putative ATP-dependent nuclease subunit B [Lactobacillus iners UPII
           143-D]
          Length = 1138

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 106/891 (11%), Positives = 237/891 (26%), Gaps = 135/891 (15%)

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
           DL+++ +E            L+I    + + L +    +       +++   +  +    
Sbjct: 138 DLNSISHEAVTEETNRKLHDLQIIYDEFIQMLGDH--FTTKDGIQLILKTVLDKKLSIDN 195

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
                 G +    +   ++  +A   N ++                  +   N       
Sbjct: 196 MNFFFCGFSYFSLSELNIVKIIAKKANLSVFAF------------KTKDAQINDKVMEGD 243

Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
           Y    Q ++AKL++F ++            N        ++  +                
Sbjct: 244 YDYIVQSTIAKLINFFNVNSLKFSTKEYGYNINLNNKEKLNAIWTENI------------ 291

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL 404
                    + V LI+AD+   E   +A  +   +       K   ++  + +       
Sbjct: 292 -PQQGLDLTNYVHLIKADSRYAEINFVAQTIYQQVVFNHYRYKDFLVLAPNLSEYETYLT 350

Query: 405 -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPE 461
              ++  I++       +       ++ ++ +          I T++K  L   ++   +
Sbjct: 351 PIFSQNNISMFNDLQKQMKFHPLVVMIENIADINDMGFKTQDIITILKTRLLIPEWYTDD 410

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                  + LE   L  N N         L         +N      Q     E  +   
Sbjct: 411 IKFIADVDLLENFVLAHNINH-------QLWKKSFYDFVDNNISHLDQINEKVEKLDKLR 463

Query: 522 LLV-DHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLTVTCLQNVCLDEHRKLPNLWF 577
             + ++I   IT L      + +     +        K           +   +      
Sbjct: 464 QFIIENIDNLITQLHKLTNVQEAVTLFWNFLLKNQINKKLEKWRNTAINNGDLQ-LAQQP 522

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           E+    L+ L    +      + N   + DI+                  + +      +
Sbjct: 523 EQIWALLNKLLKDYVLIAE--EFNTENFFDILISGFSEANFSQIPSVLDAVTVSEIGMVQ 580

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY-----------IGQAAH 686
             +F  + + G      PK   K  FL+    ++LN   A++            + Q   
Sbjct: 581 NNSFKQVFIIGAVNNSLPKIQNKPGFLNIENINELNNSIADEQQYIENNQEVNNLDQTYQ 640

Query: 687 DFEMANGTRH-LIYTRSL-RENNIPTIASRWLQRLLV--LGGTDFFDNLKKRGQCYLD-- 740
             ++ +     +  +  +   +N    AS + Q +            +L +  Q  L   
Sbjct: 641 FGDVLSLASDGVYISYPIINVSNEKMEASIFYQDIKNTLNLTEYVQHDLPENQQQLLSFI 700

Query: 741 ------------------------------WTRKLDYTTKQ-------PHYKRPKPFPPL 763
                                             L     Q       P    P     L
Sbjct: 701 TTPQASLGYIVYLKNKTNDDISNLLALTPSKQALLFDNVIQASSFKNKPVNLTPALAQEL 760

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                  S S+++    + Y  +    L L     F+ +      G  +H  + +L+K  
Sbjct: 761 YGNNINISISQLETFYANSYEYFLTYGLHLHKR--FENELTNIQSGNYYHETMDKLVKYL 818

Query: 824 INKNTPEIN------HLMKQIIDSHFE-----KENLPPHIDIIWRHLFHKISHSFLE--H 870
                           ++   I    +     +E L    +        + +   +   H
Sbjct: 819 KQHKLDFAELTKEKISVILANIQDELKTKGSYRELLGDPFNEFLFKCLDRTTKKVVNYWH 878

Query: 871 EEKIQSSIEKIFVNIPAKMA--IESIG------------IHLTGFADRIDLLK--SGFVD 914
           +   Q+    ++  +       I  +             I L G  DR+DLLK     + 
Sbjct: 879 QNMCQTKFSPLYSELSFGNKEYIAGLSYQFIDKQQKTHHISLRGKIDRVDLLKDCDNEIL 938

Query: 915 -ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG-SFSQIDCRKVANLFY 962
            + DYK+          +  I  Q+    + L+        +   +   FY
Sbjct: 939 QLIDYKSSAKKFDFNLFKNGISMQMLSYLSVLQDNSHIFSTNPVNIFGAFY 989


>gi|114798822|ref|YP_761616.1| putative DNA helicase II [Hyphomonas neptunium ATCC 15444]
 gi|114738996|gb|ABI77121.1| putative DNA helicase II [Hyphomonas neptunium ATCC 15444]
          Length = 781

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 85/746 (11%), Positives = 192/746 (25%), Gaps = 111/746 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +       T +A +E+R     + G     L  + +   +  +                 
Sbjct: 80  SQTLTVTFTNKAAREMRERAQALLGDAGEGLRWLGTFHSISAQI---------------- 123

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            +++  EL  L   +     D    L  +   +  + P       + LA +ID  +    
Sbjct: 124 -LRKHAELVGLKSSFTILDTDDQIRLCKQIVQAENLDPKRWTP--RYLAGLIDGWKNRAL 180

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE---- 220
               +   + E +G    +         + +  RL  LNA       I  +    E    
Sbjct: 181 TPSKVPPEEAELFGNGKAIK------CYEIYQARLRVLNACDFGDLLIHNITIFQESPDI 234

Query: 221 -HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I++     +  A    +  +A        +   D       W      + 
Sbjct: 235 LREYHDRFRYILVDEYQDTNVAQYLWLRLLAQGSKNLCCV--GDDDQSIYGWRGAEVDNI 292

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      P   + +L       R  +    +V     GR                
Sbjct: 293 LRFEKDF-----PGAKVVRLERNYRSTRHILAAASSVIAHNKGRL--------------G 333

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--SALITADRN 397
           +   +  +   N       V +    +   E+  IA  +   +    +    A++     
Sbjct: 334 KTLYVGNDSAVNEDTDAPKVKVRGLWDGEAESRLIADDIESWVRGGGRHDGCAVLVRASW 393

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
             R  +      GI   +  G             + L  I   +D +A   +V  P    
Sbjct: 394 QMRAFEERFILLGIPYRVIGGPRFFERAEIRDAMAYLRLIRSPDDDLAFERVVNEP---- 449

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                              +       +  L+S       +    T +      +    K
Sbjct: 450 -------------------KRGVGDTSLAKLQSYARQDGRSLFTLTPMVLQTDEIKGGAK 490

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                 +D I      L           G +  ++  +        +    +  +     
Sbjct: 491 RGLTTFIDQINLWRGKLA----------GGMPHTELAE------MILEESGYTDMLQKDR 534

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
             + +T      +++            +++ +  ++D             + IL    ++
Sbjct: 535 SPQAQTRLDNLKELVRAMGEFD-TLAGFLEHVELVMDASA---GGNGEDQVQILTLHAAK 590

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L +  + L G  E V+P   + +         +  LK  E+    A      A    ++
Sbjct: 591 GLEWPVVFLPGWEEEVFPSRRSLD---------ESGLKGLEEERRLAYVGITRARERCYI 641

Query: 698 IYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
            +  + +        + SR++  L      +  D + + G   L  +      T +   +
Sbjct: 642 SFVANRQIYGRWQAVMPSRFIDELP----PEHVDAVSETGYSGLPASADAFSGTIEDLGE 697

Query: 756 RPKPFPPLEAQPRTYSFSEIKQLIND 781
           R     P   + +  +         D
Sbjct: 698 RSDYQSPGWKRLKENAGRPTGAPPRD 723


>gi|148259238|ref|YP_001233365.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
 gi|326402391|ref|YP_004282472.1| DNA helicase II [Acidiphilium multivorum AIU301]
 gi|146400919|gb|ABQ29446.1| ATP-dependent DNA helicase, Rep family [Acidiphilium cryptum JF-5]
 gi|325049252|dbj|BAJ79590.1| DNA helicase II [Acidiphilium multivorum AIU301]
          Length = 728

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 75/741 (10%), Positives = 175/741 (23%), Gaps = 121/741 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T +A +E+R     + G+ +                    L L          
Sbjct: 54  QVLAVTFTNKAAREMRERVSALLGEPA------------------EGLWLGTFHALAARM 95

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL      +    PD    L  +   +  +         + L   I   +     
Sbjct: 96  LRRHAELVGRTSNFSILDPDDQLRLLKQVMEARRMDVKRFTP--QGLMGTIQRWKDRGLL 153

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE----- 220
            +        +  + W    +  +     + ERL  LNA       +             
Sbjct: 154 PDQ----VPRELDIDWGA--ESARDLYAAYQERLQALNAMDFGDLLMLATDLLKREPEIL 207

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    I++     +       +  +A        +   D       W     ++  
Sbjct: 208 AQYHRRFRYILVDEYQDTNLVQYYWLRLLAQASKNICCV--GDDDQSIYSWRGAEIENIL 265

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +      P   + +L          ++    +     GR      +          
Sbjct: 266 RFEQDF-----PGAKIVRLEANYRSTAPILRAASALIAHNEGRLGKTLHAGRN------- 313

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS--ALITADRNL 398
                             V ++   +  EE+ ++A  +     +  K +  A++      
Sbjct: 314 ------------DAEGEKVEVLAFWDSDEESRAVASRIEGLRADGHKLAECAVLVRAGFQ 361

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            R  +      G+   I  G+            + L  + +  D +A   +V  P    G
Sbjct: 362 TRGFEERFITIGLPYRIVGGLRFYERAEIRDAIAYLRLLAQPADDLAFERIVNTPKRGLG 421

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                                    + +       +     +  
Sbjct: 422 DTALRTLH------------------------------ERARADGVPLAEAASRVVAEGG 451

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           L     D +   +     ++         +++S     +                 +   
Sbjct: 452 LRGKARDGLRTLLAQFAEWRETLRLDGHVVALSTLLDASGYIAMWQEQKTPEAAGRIENL 511

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           +E     + F                +++ +  ++D +           + ++    ++ 
Sbjct: 512 KELVRAVAEFE-----------TLGGFLEHVALVMDNDN----EPDDDKVVLMTLHAAKG 556

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L FDT+ L G  EGV+P   A +         +   +  E+    A      A     + 
Sbjct: 557 LEFDTVFLPGWEEGVFPNQRALD---------EGGGRALEEERRLAYVGITRAKQRAIIS 607

Query: 699 YTRSLRENN--IPTIASRWLQRLLVLG------GTDFFDNLKKRGQCYLDWTRKLDYTTK 750
           +  + R       ++ SR+++ L                N                 + +
Sbjct: 608 HCANRRIYANWQSSVPSRFIEELPEDAIRTGGSAALEQRNAPPVFATARPLVAARRASGE 667

Query: 751 QPHYKRPKPFPPLEAQPRTYS 771
                   P PP   +    +
Sbjct: 668 HADAWAATPRPPRTDRITEGT 688


>gi|86156526|ref|YP_463311.1| ATP-dependent DNA helicase Rep [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773037|gb|ABC79874.1| ATP-dependent DNA helicase, Rep family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 797

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 73/694 (10%), Positives = 157/694 (22%), Gaps = 91/694 (13%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T +A  E+R     + G  +  L  +++           +   +  L P  + 
Sbjct: 62  HVLAVTFTNKAAGEMRERLERLLGPLAREL-WVQTFHAFGARFLRREAARA-GLPPSFAI 119

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSL-PISPANAIWLAKNLADIIDIIETEEK 164
                +L  +  I      D  + L P   LS        A+  A         ++    
Sbjct: 120 YDDDDQLRLVKRILAEVGLDEAEGLTPRRVLSQIDRWKNQALRAA--------EVKVAGL 171

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             +   +                 K     + + L    A       +  +R   E    
Sbjct: 172 DPDAARS-----------------KEVYHRYEQALSRAGAVDFGDLLLRPVRLLEEDAAL 214

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                G    +++     + P   RL+  +        V+   D       W      + 
Sbjct: 215 RARWAGRFRYLLVDEFQDTNPVQYRLLQLLTGPRRNVCVV--GDDDQAIYRWRGADVSNI 272

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +                            G    ++                   
Sbjct: 273 LGFDGDFP--------------------------GAKVVKLEQNYRSTRTILDAAHAVIS 306

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR--MSLDENKKKSALITADRN 397
           R     E ++       + +AL+  ++E  EA  IA A+        +  + A++     
Sbjct: 307 RARRRREKRLWTESGAGAPLALLVGEDEGAEAERIARAVAAERGRGTSGDEIAVLYRTNA 366

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  +    I   I  G             + L         + +  +V  P    
Sbjct: 367 QSRPLEAAMRAARIPYVIVRGTSFYERAEVRDAAAYLRLALSPASDLDLERVVNRPPRGI 426

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G       RA                      +     +                +    
Sbjct: 427 GEKTVERLRA--------------------HAAARGVPLVEAVAERDAVAELKPAARRAL 466

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                LV  +   +  L      +     +  +S   +              R       
Sbjct: 467 AEFHDLVTGLAADVPALDAGVAVQEVLKRSGMLSRLEEEHT------DEAVERAENLAEL 520

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
               +      +     G   +         + + I              + ++    ++
Sbjct: 521 VAAAREFDESIAGEPPPGDPDEVRPPPLARFLEQ-IALLGEADAATPEGRVALMTLHAAK 579

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F+ + L G+ +G  P         +      L+ +    Y+G       +       
Sbjct: 580 GLEFEAVFLAGMEDGTLPYERPWADQTASERDESLDEERRLCYVGMTRAKRRLTLSLARR 639

Query: 698 IYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDN 730
                    +      SR+L+ L      D    
Sbjct: 640 RIGYGESGPSYRNMEPSRFLRDLPPELFGDAVAR 673


>gi|295401125|ref|ZP_06811099.1| recombination helicase AddA [Geobacillus thermoglucosidasius
            C56-YS93]
 gi|294976918|gb|EFG52522.1| recombination helicase AddA [Geobacillus thermoglucosidasius
            C56-YS93]
          Length = 1238

 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 86/876 (9%), Positives = 218/876 (24%), Gaps = 126/876 (14%)

Query: 186  DFLKIASKYWTERLVELNASSPV--GYQIALMRAEAEHLM------------KGTKGPII 231
              +K  ++ +  R  E          +    +    +               +     ++
Sbjct: 352  RLVKRFAEMFQARKREKGIVDFSDLEHYCLQILRHPDSADGQWLPSDAALDYRAQFIEVL 411

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT-TYST 290
            +     +      ++  VA    G  +    D       +                   T
Sbjct: 412  VDEYQDTNMVQEAILQLVAK---GGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTADGT 468

Query: 291  HP------QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
            HP        +     + L       K++   +             +   D  D  +   
Sbjct: 469  HPGMKIDLSNNFRSRAEVLHGTNFIFKQIMGETVGEIEYDETAELKYGAVDYPDSEHAAP 528

Query: 345  LENKIPNIQKCFSDVALIEADNERE---EAISIAIALRM---------------SLDENK 386
                I    +   +   ++A++      EA  +A  ++                      
Sbjct: 529  ELIVIDRNSEEGEESGELDANDLAAAQLEARMMAKKIKEIVSEPLHVFDRKAKRMRRAMY 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
            +   ++      A ++  E    GI +              +++ SLL  I      + +
Sbjct: 589  RDIVILLRSMTAAPQIMEEFRAQGIPVYADLSSGYFQATEIAVMLSLLKVIDNPYQDIPL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A++++ P+      E  L R                +   D K   + +   +  +  + 
Sbjct: 649  ASVLRSPIVGLNENELALIRIHEKKGTFYEAMMSFLHKAADNKEEEMLQQKLRLFSEQLH 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL--------TV 558
             W++   +      +  +         +      K       ++ D  +           
Sbjct: 709  QWRTMARQRSLADVIWQLYRDTHFYDFVGGLPGGKQRQANLRALYDRARQYEATSFRGLF 768

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI---------- 608
              L+ +   + R          G+    +    I +   ++   +    +          
Sbjct: 769  RFLRFIERLQERGDDLGAARALGEQEDVVRIMTIHSSKGLEFPIVFVAGLARPFNTRDLY 828

Query: 609  ----------ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL----------GG 648
                               ++        + I        L  +  IL            
Sbjct: 829  GSYLLDKELGFAARFVDPKLRISYPTLPQIAIRQKKRLDYLAEEMRILYVALTRAKEKLY 888

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF--EMANGTRHLIYTRSLREN 706
            L   V       + + S   + +  L    +   +   D+        R       L   
Sbjct: 889  LVAAVKDAQKEIDKWKSTAAEEEWLLPDDVRAAARCYLDWIGRALIRHRDGQRLGDLSHV 948

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                 +   + R+ ++   +  D  ++  +        L    + P     +    L + 
Sbjct: 949  CREVASHPSVWRITIVPARELHDANQETERLDEQIATALKRGERVPTGGYAEEVQRLLSW 1008

Query: 767  PRTY----------SFSEIKQLIN---DPYAVYARRI----LKLDFIPHFKKDPDRTDRG 809
               Y          + SE+K+      +   +         L    +   +K     ++G
Sbjct: 1009 KYAYEKETLVRAKQAVSELKRHREIFGENADIMLLHSFSTPLFERPMFMREKTLTPAEKG 1068

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            T  H ++     + ++   P     +++ I    + E L    +         I   F  
Sbjct: 1069 TAMHIVM-----RHVDLTVPITEEAVREQIAKLVQMELL--THEQAEAVNVSSIVAFFDT 1121

Query: 870  HEEKIQSSIEKIFVNIPAKMAIES-----------IGIHLTGFADRIDLLKSGFVDITDY 918
               K   +  ++   IP  +A+ +             I + G  D +   + G + + D+
Sbjct: 1122 EIGKRLRTASEVHREIPFSLALPAKEVYGDGVGKEGNILVQGVIDCLFADEKG-LVLIDF 1180

Query: 919  KTGDN-------PKKETAQ-KLIDPQLSLEAAALKA 946
            KT           + +         Q+ L   A++ 
Sbjct: 1181 KTDAVNRFAGGWREAKQVMLSRYQTQMQLYRRAVEQ 1216


>gi|325916738|ref|ZP_08178994.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325537047|gb|EGD08787.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 1135

 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 115/942 (12%), Positives = 239/942 (25%), Gaps = 119/942 (12%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
            E  R  P  PLL   V + +P     + L+S      G  + +     + G+ V     
Sbjct: 26  QELRRPVPGQPLLQPEV-VLIPQVAMRRWLQSTLAAEHGVAANL--EFLTPGEFVARAL- 81

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
                  NL P   ++       RL    ++ L      L P +             LA 
Sbjct: 82  -----ECNLGPADDDLDMATTQWRLYAALQSDLGSDAA-LAPLAGYLSDGDALKPWALAG 135

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            L  + +  +   + W  L                  +                      
Sbjct: 136 ELGSVFEKYQAWRRDW-LLRWEGGADPDDPQARLWRSIA------------SGRQYRARR 182

Query: 211 QIALMRAEAEHLMKGT---KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
               +   A           G +         P   R+++T A        LP       
Sbjct: 183 IGQYLDRYARADGPLPQGLPGRLFAFAILNISPDVLRVLATQARVGTLHFYLPTPTQDYW 242

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV----------- 316
             +      +  +            Q     LL        D   L              
Sbjct: 243 GDLQTLWQRRREDGAVQLFAE----QVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEIA 298

Query: 317 --SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI-------EADNE 367
             ++ +      ++   L         +D+   + P +      V L             
Sbjct: 299 AYADPLESGRRALADGGLGDSLLRRMQSDLFHRRAPRVPAALPTVNLHDPSLQAHACHTR 358

Query: 368 REEAISIAIALRMSLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDI 415
             E   +   LR  LD+         ++ A+++ D +        +         +   +
Sbjct: 359 LRELQVLHDQLRALLDDPRFDPPLQPREIAVLSPDIDPYVPYLDAVFGSHGNDDALPYAL 418

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG--FPEKYLSRAKNALEL 473
           +   PL++   + +  SLL           I  L+            E  L R +  L  
Sbjct: 419 ADASPLASEPLAEVFLSLLGLPIARFGLHEILDLLASAPIAEAAGLDEAGLERLRGWLHA 478

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
              R   ++     L++   D    +     +    +  +++D +            +  
Sbjct: 479 AGARWGLDAAHRRQLQAPSDDAYTWRFALDRLLLGHASGADDDIDGVAPWPQLEGSALAA 538

Query: 534 LVTYKTNKNSTCGNLSI-------SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           L T          + ++        +W +  +  L+ +              +  ++L  
Sbjct: 539 LDTLLRLLRVLERHQAVLAEAMTPVEWRERLLGLLEALMPKAPTAPRAQRALDRLRSLID 598

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            F++             E +      + GE+       +  +     +  RLL F  + L
Sbjct: 599 QFARDAVRADYAGKVPAEVVRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRVICL 658

Query: 647 GGLNEGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
            G+N+G +P+             L    +   +  T E         F  A    +L Y 
Sbjct: 659 LGMNDGDFPRRDPAAGLNRLTAELGTERRRHGDRSTREDDRFLFLQLFASAQEVFYLSYL 718

Query: 701 RSLRENNIPTIASRWLQRL-----------------------------LVLGGTDFFDNL 731
            +   +      S  +  L                                   D     
Sbjct: 719 GADARDGSVREPSVLVSELLGSAAQYHADPAAFDTLVVRHPLQPFAAAAFGAVGDDAHAD 778

Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY----SFSEIKQLINDPYAVYA 787
            +R      W   +D  T +     P     L A         S  ++++L  DP   + 
Sbjct: 779 PRRFSYRRQWRPAVDSLTGRRRALAPWVAGALPADTVALPANVSMDDLRRLFGDPAGQFL 838

Query: 788 RRILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
           R  L +       +D D      + RG   + +  ++ +  +  +T  +   ++      
Sbjct: 839 RHRLGMRLPDPASEDSDLEPLLASTRGLDHYGLQQQVFEAALADDTERLYERLRA---RA 895

Query: 843 FEKENLPPHIDIIWR-HLFHKISHSFLEHEEKIQSSIEKIFV 883
                      +  R       + +F +   +  +   ++ V
Sbjct: 896 LLPSGPLGRRQLDERVAQLRPYAQAFRQWRGEAPAQSRRLQV 937


>gi|92117527|ref|YP_577256.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
 gi|91800421|gb|ABE62796.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
          Length = 1110

 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 81/814 (9%), Positives = 195/814 (23%), Gaps = 91/814 (11%)

Query: 167  EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG- 225
              L    + +  +        L+   + +      L+    +     L+  +AE      
Sbjct: 324  STLIGAVSRELLLRLCNEMAQLREDWRGYKRAAALLDFDDLLYKARDLLANDAEVRNALS 383

Query: 226  -TKGPIIIAGSTGSIPATARLM----------STVANHPNGAIVLPGLDCHIPTAIWNTI 274
                 +++     + P    ++            ++       +    D       +   
Sbjct: 384  KRFRHVLVDEFQDTDPLQTEILWLLCGDDSAGEPLSRPLRPGALFLVGDPKQAIYRFRGA 443

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
               +     +     +         L  +      V+ +    N+ +   +  S      
Sbjct: 444  DVNAYIAARAAIAPGS---------LLKITANFRSVEPILAFVNKKFEHVLSESAGQPGF 494

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI---------ALRMSLDEN 385
                  +    +  +  +    ++           EA+++A           +R      
Sbjct: 495  SELSPIHPASADPAVVALDVTVNEEKPSAGAMRDAEALAVADLCGRLAGNMMVRDHHTNE 554

Query: 386  KK-----KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
             +       AL+        R +  L   GI +   AG           L +L  A+   
Sbjct: 555  LRKCRFGDIALLAPVGTELWRFEEALEDLGIPVSTQAGKGFFRRQEIQDLVALTCALADP 614

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             D +A+   ++ P+                                 L    L  IA Q 
Sbjct: 615  RDSLALGAFLRGPMV-------------------------------GLTETELLDIAEQL 643

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
             +      Q  +     +   +        I  L   +     T     +SD        
Sbjct: 644  PSDPDQPNQLPMLSLRTDPDQIANATASNAIRILAFLRNRGGKTTPYSLLSDAVAALHVR 703

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
             Q     +      +   +    L+  +             A  W + + ++        
Sbjct: 704  PQLRQRFKEGTERAVANVDLFLELARAYDVRGLRAFARDMRA-NWEETVRQVE-----GR 757

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN-TAKNPFLSRVMQSDLNLKTA-- 677
               +  ++ ++    ++ L +  +I   +      ++  A +   +R     L       
Sbjct: 758  PDAEEQSISLITVHSAKGLEWSVVIPLNMTGKPQSESGLAYDRSSNRFSIPVLGNDPPDY 817

Query: 678  ---------EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
                     E    +    +      R L+              +R ++  L        
Sbjct: 818  DGIKSKNVVESARERVRLWYVATTRARDLLILPRHSAKLAEDSWTRIVELGLEHLPALDG 877

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
              L   GQ        L                      R  S +E+    +        
Sbjct: 878  AALGAPGQAPAKSGENLQTREIFAAEASRILADRKAVTWRRPSRAELDPHQSGNVEAAVA 937

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
                             + RG + H +I E++          +     +++         
Sbjct: 938  SEAVEIPPSVV---VGSSTRGVILHKLIEEILSGETQDTLERLEIRAGELLTQIGSGAAQ 994

Query: 849  PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-KMAIESIGIHLTGFADRIDL 907
                 I    L   +  +    E K         + +    + ++   + ++G AD + L
Sbjct: 995  NTQAGISPAELSATVMRTLALSEIKELRHRLVAELPVFGCSITVDGETL-ISGLADAVAL 1053

Query: 908  LKSGFV-DITDYKTGDNPKKETAQKLIDPQLSLE 940
             +SG +  + D+K+   P           Q+   
Sbjct: 1054 DESGAIDVVIDWKSDVAPDVAALD-HYRQQIGDY 1086


>gi|289753005|ref|ZP_06512383.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054]
 gi|289693592|gb|EFD61021.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054]
          Length = 650

 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 76/633 (12%), Positives = 167/633 (26%), Gaps = 88/633 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R   + + G+K+  +  + +              L   LN   S
Sbjct: 68  GQILAITFTNKAAAEMRERVVGLVGEKARYM-WVSTFHSTCVRILRNQAALIEGLNSNFS 126

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+ +    L   IK   P                   LA+ I  ++ E  
Sbjct: 127 IYDADDS-RRLLQMVGRDLGLDIKRYSPRL-----------------LANAISNLKNELI 168

Query: 165 KW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----- 218
              + L  L  +         A  +      +  RL   NA          +        
Sbjct: 169 DPHQALAGLTEDSDD-----LARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQ 223

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH------PNGAIVLPGLDCHIPTAIWN 272
                +     +++     +  A   L+  +         P G + +   D       + 
Sbjct: 224 IAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCV-VGDADQSIYAFR 282

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             T ++            +P      L       +  +    +V     GR         
Sbjct: 283 GATIRNIEDFE-----RDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRR-------- 329

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKS 389
                        E ++         +    ADNE +EA  +A    AL    +      
Sbjct: 330 -------------EKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDV 376

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A+     N +R ++  L R GI   +  G+          + + L  +    D +++  +
Sbjct: 377 AVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRI 436

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
           +  P    G   +                   +        +   +      NT      
Sbjct: 437 LNTPRRGIGDRAEACVAVYAEN----------TGVGFGDALVAAAQGKVPMLNTRAEKAI 486

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
           +   E   EL   L D + + +  ++     +     +    +  +L    L  +    H
Sbjct: 487 AGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARL--DNLNELVSVAH 544

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
               +                +      +    +    +    +  +  +     +  + 
Sbjct: 545 EFSTDRENAAA----------LGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVT 594

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
           ++    ++ L F  + + G  +G++P   A + 
Sbjct: 595 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDN 627


>gi|329118654|ref|ZP_08247358.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465389|gb|EGF11670.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 805

 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/718 (9%), Positives = 169/718 (23%), Gaps = 118/718 (16%)

Query: 50  YVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
              T +A +E+++    +     ++  L    +   +              L      + 
Sbjct: 137 VTFTNKAAKEMQTRLGAMIPVNIRAMWL---GTFHGLCHRFLRLH-HRDAGLPASFQILD 192

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
              +L+ LI      L    + + P +                 L   I+  +    +  
Sbjct: 193 SGDQLS-LIKRLLKTLNIAEEIIAPRT-----------------LQGFINAQKESGLRAN 234

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHL 222
            + A                L      + +              +               
Sbjct: 235 AIEAPD-----PHTRR----LIECYAEYDKVCQREGVVDFAELMLRSYELLQNNEMLRRH 285

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +     I++     +       +  +A     A V    D       +      +    
Sbjct: 286 YQNRFNHILVDEFQDTNKLQYAWLKLMAG--GNAAVFAVGDDDQSIYRFRGAHVGN---- 339

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                        +A L++   I              +      +       +     N 
Sbjct: 340 -------------MAALMNEFHISEPVK---------LEQNYRSVGNILAAANAVIENND 377

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLAR 400
           + L   +    +    +    A ++ +EA  +    +    E K   ++A++      +R
Sbjct: 378 ERLGKNLRTDAEAGDKIRFFSAPSDFDEAQFVIEETKSLQREGKSLNETAVLYRSNAQSR 437

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            ++  L R G+   I  G+            + L      +D  A+  ++  P    G  
Sbjct: 438 VIEQALFRSGLPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINMPPRGIGAR 497

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                +                              A    +       +          
Sbjct: 498 TIENLQTA---------------------------SAETGVSLWQAACAAGAKAAKVAAF 530

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
           V L++++   +  +           G +  S   +   T   +           +     
Sbjct: 531 VRLIENLRTQVGQM----PLAEIMSGIVRDSGLVEYYQTQKGDHQDRLDNLDELVNAAIA 586

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
            K   S F  + E  +   A  I  +  ++            E    + ++    ++ L 
Sbjct: 587 FKPEESNFEILPENAAADPAFPI--LAFLSNAALESGENQAGEGEDAVQLMTVHAAKGLE 644

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
           FDT+ L G+ E           F S +  ++      E+ +   A    +    + L  +
Sbjct: 645 FDTVFLTGMEE---------GRFPSELSLAERGGLQEERRLMYVA----ITRARKRLYIS 691

Query: 701 RSL----RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
            +            + SR+++ +          +              +         
Sbjct: 692 MAQQRMLHGQTQFGVPSRFVEEIPPEVLHFLSPHKTATTFADKPRRSDIPAADTYQPA 749


>gi|332297332|ref|YP_004439254.1| hypothetical protein Trebr_0681 [Treponema brennaborense DSM 12168]
 gi|332180435|gb|AEE16123.1| hypothetical protein Trebr_0681 [Treponema brennaborense DSM 12168]
          Length = 1016

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 80/803 (9%), Positives = 182/803 (22%), Gaps = 154/803 (19%)

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVK-L 404
                     S   +    N R E  ++   ++   D        ++  AD          
Sbjct: 232  DTAASPDTASSPRVHCFGNSRAELAAVVRKIKELHDRGLAWNDISVNIADMETYAPYLER 291

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV-KHPLAKFGFPEKY 463
            E     I     AG PLS+    +   ++   + +   F  +  L+    L         
Sbjct: 292  ECELHSIPCVRRAGKPLSSYAAGTFFKTVWECVSRQFPFDEVRKLLLDKNLPWKDGESID 351

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
               A            +    I   +       A                   +E A   
Sbjct: 352  QLIAFGKKNNCLCSWREGDVQIDVWEQAFRSAAAG-----------------REERARTF 394

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
               + + ++ L    + +       S  +               +      L  +  G+ 
Sbjct: 395  YTLLKKELSALTAADSFERIRSRYFSFRERF------------FDMTLCTPLADKVLGRC 442

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            +S L + +    +       +      R +  +   P+ E    + +L    +       
Sbjct: 443  VSELLALVDIENTYPTVKPEQPFSFFVRYLADKVYLPRQETQG-VNLLPYRAAAGAAAGC 501

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
             I+ G ++        +  FL    +  L L  A+         ++M +   +  +T + 
Sbjct: 502  HIVVGASQKTLSVTVKQLGFLREDKRKRLALVDADLSASFIR-LYDMHSADGNAYFTFAE 560

Query: 704  RENNI--------------PTIASRWLQRLLVLGGTDFFDNLKKRGQC-------YLDWT 742
                               P     +          D     ++           +    
Sbjct: 561  NSFGGYAIPHSALAQAEPDPAEPDAYGAEAEWFADPDGTPFPERLYPVQKTGFFNWSAAA 620

Query: 743  RKLDYTT-----------------------------------KQPHYKRPKPFPPLEA-- 765
               D                                        P   R + + P++   
Sbjct: 621  GVSDEKDRQTECTGGNVGVSDEKDWQTECTGENPSARRGSRTAVPEAVRARLYAPIDGVG 680

Query: 766  -----QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
                 +    S +++      P      RI  L+      +       G L+H ++    
Sbjct: 681  QDAPSRTLRVSVTDLHAYYECPVKWLFSRIFGLESFSLDAELTAANTTGVLYHTVLERFF 740

Query: 821  KKRINKN--------------TPEINHLMKQIIDSHFEKENLPPHID---------IIWR 857
                                       ++++ +++   +      +           + R
Sbjct: 741  SAVKADPQAKGTLPPLANGQMPENCAQIVRRELNAVLAETERNGSLQGNAVSVIGAELLR 800

Query: 858  HL---FHKISHSFLEHEEKIQSSIEKIFVNIP---AKMAIESIGIHLTGFADRIDLLKS- 910
                   +   + L       +      V             +   L G  D + +    
Sbjct: 801  AREQALEETLRNCLRAFLSYFAGHIVSEVETAYSFVHREENGLASILNGRLDLVLVEPET 860

Query: 911  GFVDITDYKTGDNPKKETAQKL----------IDP---QLSLEAAALKAGSFSQIDCRKV 957
                I D+KT   P      +L           +    Q+++     +  +   I   K 
Sbjct: 861  DAPVIIDFKTNGTPNAAECAQLQLQQSNSVKTYELKNYQMAMYTLLYEH-AHPGIAVEKT 919

Query: 958  ANLFYI---------RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN--GEQ 1006
                 +          +           D    S +      L  L E ++         
Sbjct: 920  CFFSVVEAEPTVVTGSITDDGGRKKPYRDSLVVSREAFEPSIL-LLQEKISSYVRAVAAA 978

Query: 1007 PFISHLRLSEKSNIQSEYDHLAR 1029
              +S   ++ K+     Y H+ R
Sbjct: 979  EPVSAAGVTYKTCGGCPYRHVCR 1001


>gi|311029280|ref|ZP_07707370.1| ATP-dependent DNA helicase PcrA [Bacillus sp. m3-13]
          Length = 767

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 84/755 (11%), Positives = 196/755 (25%), Gaps = 126/755 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           ++     T +A +E++    ++ G  +       I +   +       D+          
Sbjct: 58  NILAITFTNKAAREMKERVEKLLGPAAEDIW---ISTFHSMCVRILRRDIDRI------- 107

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
             + R   +        + + +I+KD   +     P +          +   I   + E 
Sbjct: 108 -GMNRNFTILDTTDQL-SVIKNILKDRNIDPKKFEPRT----------ILGTISSAKNEL 155

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWT--ERLVELNASSPVGYQIALMRAEAEH 221
              E       +  G +    A+      K     + L   +      +    +    E+
Sbjct: 156 MNPEQYAK---QPLGPYEQQVAEIYTDYQKRLKKNQALDFDDLIMTTIHLFKRVPEVLEY 212

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +     I +     +  A   L++ +A+      V+   D       W      +   
Sbjct: 213 YQR-KFQYIHVDEYQDTNRAQYTLVNLLADRLKNLCVV--GDSDQSIYRWRGADIANILS 269

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                    +P   +  L       +  ++    V +   GR                  
Sbjct: 270 FEK-----DYPNAEVVLLEQNYRSTKRILEAANRVIDNNIGRKKKN-------------- 310

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRN 397
                  +         +   +AD+E+ EA  +   +R  + +N        A++     
Sbjct: 311 -------LWTENDEGQKIIHYQADSEKSEAQFVVGKMRELMRQNPSRTLGDFAILYRTNA 363

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  L    IN  I  G           + + L  I   +D +++  +V  P    
Sbjct: 364 QSRVMEEMLLMSNINYTIVGGTKFYDRKEIKDILAYLRLIANPDDDISLQRIVNVPKRGI 423

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G               +                  +     + +   V    +   +E +
Sbjct: 424 GATTVDKIANYATQHDI-----------------SIYTALAEVDLIGVSGRATSQLKEFR 466

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            L    V                         + +  + +                 L  
Sbjct: 467 SLIEGYVQMQEYI--------------SVTELVEEVLEKSGYREMLKADKTIESQSRLEN 512

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            +E  +++  F +  +  S +        D+       +  +    +   + ++    ++
Sbjct: 513 IDEFLSVTKNFEEKYDDKSLVAF----LTDLALVADIDKLDEEDPAQQEGVILMTLHAAK 568

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---NLKTAEKYIGQAAHDFEMANGT 694
            L F  + L G+ EGV+P + +         +  L    +  AE+ +           G 
Sbjct: 569 GLEFPVVFLIGMEEGVFPHSRSLFEEAEMEEERRLAYVGITRAEEQLFITNAQMRTLFGR 628

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
            ++               SR+++ +         +                  +   P  
Sbjct: 629 TNI------------NPPSRFIKEIPEELLESEENKE--------------AASRPTPFG 662

Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
            R   F    A     S S  +     P +  ARR
Sbjct: 663 GRGSSFGGGSASTFGGSSSTGRARAASPASQTARR 697


>gi|114047351|ref|YP_737901.1| exodeoxyribonuclease V subunit gamma [Shewanella sp. MR-7]
 gi|113888793|gb|ABI42844.1| exodeoxyribonuclease V, gamma subunit [Shewanella sp. MR-7]
          Length = 1234

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 94/843 (11%), Positives = 211/843 (25%), Gaps = 94/843 (11%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   L    R       LL +  I V +      LR E  +  G  + +      L   
Sbjct: 12  VLCAHLAAYLRQPLPGAGLLQNEHILVQSPGMSTWLRLEIAKQNGIAAALE---FPLPSS 68

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +   DLL +       +      +L +L+    ++        Y    L    S A 
Sbjct: 69  FIWQLCHDLLPNVPKENAFTKAAMTWKLMQLLPRLLDEPSFGPLRHYLGHTLDNLESSAA 128

Query: 145 -----------------AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLA 184
                               L   +ADI D        W                     
Sbjct: 129 DTHSNHQHGAVSADDIKLYQLCGRIADIFDQYLVYRPDWIAAWEANEPLESLKLNEEQSW 188

Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPAT 242
              L  A   +    +  +          L+ A  +           + + G +   P T
Sbjct: 189 QPILWRALIAYNRDELRQSHYHRANLHQDLIAALGDSTNSLAKLPQRLFVFGISSMAPQT 248

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTA----------IWNTITEKSTNITSSNTTYSTHP 292
             ++  +A+  +  I+      H                    ++       +     +P
Sbjct: 249 IDVLHQLASRIDVIILSLSPCQHYWGDIIDPRHRARMALQYAGKRQLAEQWEDKLEVGNP 308

Query: 293 QYSL-----AKLLDFLDIKREDVKRLGNVS------NEMYGRSMVISKSFLPPDTSDMRN 341
             +       +LLD L     +    G+        +     +     + +  D  +M+ 
Sbjct: 309 LLANNGKMGRELLDMLLELPPEHCDFGDDVYCQPCGDPNDPHARASMLAGVQYDILEMQT 368

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--------------DENKK 387
            D +      + +  ++  ++ AD++     S    LR                     K
Sbjct: 369 LDRVLGPDAELYQEVANRRVLTADDDSILIKSCHSPLREVETLHDHLLDLLDSDNQLTPK 428

Query: 388 KSALITADRNLARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
              ++  D          +             I+       +   +   +LLN       
Sbjct: 429 DIVVMMPDVAAYAPYIDAVFAAKQGLEYIPYAIADRGAAQESPLINSFLNLLNINQSRFG 488

Query: 443 FMAIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGNK--------------NSYDIM 486
              I ++++ P  L +F   E  L   +  L+   +R  +               +    
Sbjct: 489 LTDILSILEVPAILRRFQLEEDELPLIRRWLDEAGVRWGRDEQSRLKQGVPAFEQNSWAF 548

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            +K L+L          +    Q         +       + + +  +            
Sbjct: 549 GIKRLILGYALRDDAPLYQSSPQGMHYLTVAGVEGQSAQALGKLLNFIEVLDETTQVLAK 608

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG------KTLSSLFSKIIETGSCIKA 600
             + S         L      +  +   L    +       + L++  + +    + +  
Sbjct: 609 AQAPSLRLLELTELLNAFYAPDEDEREQLQEIRDAIAALEQELLAASPADMGPQANDLDL 668

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +         + +    V  +     ++     +  R + F  + L G+N+GV+P+    
Sbjct: 669 SIEVLALWFNQRLTESRVGQRYLAG-SVNFCTLMPMRSIPFKVVCLLGMNDGVYPRVQHP 727

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA------SR 714
             F             + +   +      + +    L  +   R     +        S 
Sbjct: 728 VGFDLMAHFGARKGDRSRRLDDRYLFLEALLSARELLYISYIGRSERDNSERIPSMLVSE 787

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            ++   +    +            +     L+        +   P     A P+  +F  
Sbjct: 788 LIEYCQLCYLPESLAAEASTVSNEVAQQALLEAIVSHQPLQPFDPKLYQAALPQAPTFHG 847

Query: 775 IKQ 777
           IKQ
Sbjct: 848 IKQ 850


>gi|328955223|ref|YP_004372556.1| hypothetical protein Corgl_0627 [Coriobacterium glomerans PW2]
 gi|328455547|gb|AEB06741.1| hypothetical protein Corgl_0627 [Coriobacterium glomerans PW2]
          Length = 998

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 82/699 (11%), Positives = 172/699 (24%), Gaps = 69/699 (9%)

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
             E             T     L  LL  +    +    +      +            P
Sbjct: 171 ARELPARARVIVLRDVTEFPAYLVSLLAAVAAHGDVCILIDKEQEPLIAHLRPAFLGADP 230

Query: 334 PDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREE----AISIAIALRMSLDENKKK 388
               ++ +  I    I + Q      +   E           A +IA  +     +  + 
Sbjct: 231 EVRIEIDDALIETAAISSAQTGEETPLTFFEVAGPHARDAAYARAIADMMDAEDAQQMRI 290

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
           + + T    L   +   L   GI          S T     L +L +   ++ DF     
Sbjct: 291 AVVSTGPGALFEALAPRLAALGIASRARIVAAFSETSVGRHLAALTDLASRMEDFDRGIA 350

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                       +   S    AL   A R +K       L          +         
Sbjct: 351 SASEWWPAPELSDWLRSPLSGALADAACRFDKRIRSKRALDP-------ERVLRDLQGVQ 403

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
               S  D+  +      +      +    T         +I++  +   +    +   +
Sbjct: 404 SRTRSARDRLASTNPWSGVPTICADVFRRITEGRYISALRAIAEVARALPSSA--MGTAD 461

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
            R    L      +   +L     + G      A     +   L    +           
Sbjct: 462 GRIRALLEQTMATRAADALDMAAGDLGVNQTVAATVLTGLTVELSVSASSAVDTRYRGQA 521

Query: 629 FILGTLESRLLNF---DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
             +   E+ LL       +    +++  +P +  + P  S   + D  +   E       
Sbjct: 522 LFVTPAEAALLEPGSVRGVFFADVDQSSYPLSCEEGPLASIAERLDRTVVALEPVARLRD 581

Query: 686 HDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLL--------------------VLGG 724
               +++    ++  R   +        +     L                      L  
Sbjct: 582 EFGRVSDLVDRVVLARVTHDAQGQDRYPAAIWTELALSRSAAGGALSEIGEGDIVGDLDP 641

Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                   +R  C                 +R    P     PR  S S+I+     P  
Sbjct: 642 HAGSGMRSERVSCLDPQHLSPQAVRYLVPLQRAPDEPRSSLVPRRLSASQIETYAACPLC 701

Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT----PEINHLMKQIID 840
            +  + ++     H        ++G   H+++    ++ I+       PE      +++ 
Sbjct: 702 WFISQRIR---PQHLDAGFTNMEKGNFVHDVMHLFHQQLIDLGERRVRPENLARSLEVLS 758

Query: 841 SHFEK---------------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
              E+                     I+ +          + +  E  + +     ++  
Sbjct: 759 GVLERVRADHARGSTSSSGALIAHSKIEELEIDELEAQIANVVRFEADVLAPFAPRWLEY 818

Query: 886 PAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYK 919
                 +++G+      L G  DR+D    G   I DYK
Sbjct: 819 SF----DALGVTYAAWPLGGRIDRVDSDAQGRAVIIDYK 853


>gi|310287344|ref|YP_003938602.1| ATP-dependent DNA helicase pcrA [Bifidobacterium bifidum S17]
 gi|309251280|gb|ADO53028.1| ATP-dependent DNA helicase pcrA [Bifidobacterium bifidum S17]
          Length = 885

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 79/695 (11%), Positives = 180/695 (25%), Gaps = 85/695 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A  E+R     + G  +  +  + +           D   S  L    S
Sbjct: 64  SQILAITFTNKAAAEMRERLEGLIGPVAQRM-WVSTFHSACVRILRRDGQ-SIGLASGFS 121

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            I    +  RL+ +    L   +K   P + LS             +L    + ++    
Sbjct: 122 -IYDTADCERLVKLIGADLNIDLKRYTPRAILSRISDYK------NSLIGWQEQLKRYAP 174

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
            +      +       +        +    +  RL   NA          +         
Sbjct: 175 DY---RPGQRGYQIGNFGDIEVLYSVIYAEYQHRLAMANAVDFDDLIGRTVELLRTQPQV 231

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +  A   L+  +A       V+P                   
Sbjct: 232 ADYYRHKFRYILVDEYQDTNHAQYELIRELAGVDAAGQVVPD------------APSAGR 279

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
              +  T      Q   A     +   ++  +   N    M  ++   +++ L    + +
Sbjct: 280 AGPAWITVVGDSDQSIYAFRGADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAANAVI 339

Query: 340 RNTDILENK-IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395
            N    + K +         +    ADN  +EA  IA  +     E        A++   
Sbjct: 340 ANNQGRKPKKLWTALGIGDPIVGYAADNAEQEAAWIAGEIARVRAEEGTPYSDMAIMYRA 399

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L   G+   +  G             + L AI    D + +  ++  P  
Sbjct: 400 NAQSRALEGALVHAGLPYQLVGGTRFYERREVKDAIAYLQAIVNPADNVNMRRILNVP-- 457

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                     RA++ +   A       +D ++    +                  R    
Sbjct: 458 ----KRGLGPRAESIIVSYADAHATTFWDGIEHLDQIDGVPTRTGKQLAAFRDLMRSLSA 513

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                                           LS S   +                L  L
Sbjct: 514 FAAE----------------HDGKPSEVVGEVLSQSGLLEELQRSEDPQDASRVENLSQL 557

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                    ++             A    +++    + D + +  + E S  + ++    
Sbjct: 558 QSVAAEFEQNTP-----------DATLAGFLETTALVADSDQLPSEGEDSGKVTLMTLHT 606

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L +  + L G+ +G +P + A              ++ A++   +    +      +
Sbjct: 607 AKGLEYPVVFLTGMEQGTFPHSRA--------------MEDADELSEERRLAYVGITRAK 652

Query: 696 HLIY-----TRSLRENNIPTIASRWLQRLLVLGGT 725
             +Y      R+        + S++L  +      
Sbjct: 653 RRLYVTRAAVRAQWGQANEMMPSQFLDEIPDRLID 687


>gi|227535467|ref|ZP_03965516.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227186877|gb|EEI66944.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 751

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 74/624 (11%), Positives = 168/624 (26%), Gaps = 97/624 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVS 104
           ++     T +A +E+R    ++   +      + +   +       D+  L YN    ++
Sbjct: 56  NILAITFTNKAAREMRERVGKLVDAEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIA 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +    L L + I      L D   D     P              K++   I   + E  
Sbjct: 116 DPAEQLTLVKHI------LADFNLDPKRYDP--------------KSILGAISSAKNELV 155

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
             +       +    +  + A         + +RL    A       +  +    +    
Sbjct: 156 DPQ--TYANEQANSPFTKVVAQ----VYAEYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209

Query: 225 GT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I +     +  A  +L+  +A   +   V+   D       W     ++ 
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYQLVHMLAEGYHNLCVV--GDADQSIYGWRGANMQNI 267

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      +P+  +  L       +  +    +V      R                
Sbjct: 268 LDFKK-----DYPKAQVVLLEQNYRSTKTILSAANDVIQNNQNRQAK------------- 309

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADR 396
                    +    +    +    A +E +EAI +   +   + +N +     A++    
Sbjct: 310 --------TLWTENREGDKITYYRAQSETDEAIFVIRRIEAEIADNHRKYSDFAILYRTN 361

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++    +  I   +  G             +    +    D M+   +V  P   
Sbjct: 362 AQSRAIEEAFVKSNIPYKMVGGHKFYDRKEIRDALAYFRLVVNPEDDMSFNRIVNEPKRG 421

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G        A                             A + + + +    +      
Sbjct: 422 IGNTSVEKLEAI----------------------------ANEHDWSLLEAAANAELSPI 453

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
              A   +    + I  L T + + N T    +I + +    T      L+   ++ NL 
Sbjct: 454 AGKARGQLAKFGKMIQQLGTRRKDLNVTEMMQAILEDSGYLSTLRAAHNLEADTRIENLE 513

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                        +     S I      ++D +  L          E +  + ++    +
Sbjct: 514 ELLSVTQGFDSRYQPENEDSDI------FVDFLAELALLSDQDDVEEDAQEVTLMTLHAA 567

Query: 637 RLLNFDTLILGGLNEGVWPKNTAK 660
           + L F  + L G+ EG++P + A 
Sbjct: 568 KGLEFPVVFLVGMEEGLFPLSRAS 591


>gi|169634040|ref|YP_001707776.1| ATP-dependent DNA helicase [Acinetobacter baumannii SDF]
 gi|169152832|emb|CAP01861.1| ATP-dependent DNA helicase [Acinetobacter baumannii]
          Length = 679

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 76/688 (11%), Positives = 177/688 (25%), Gaps = 110/688 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +T    T +A +E++    ++  ++      + +           +L  +  L    S 
Sbjct: 53  RITAMTFTNKAAREMKERVTKLLSREEAKGLSVSTFHTFGLNLLRLELK-NLPLKANFSI 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +      A         L         ES   +  +         +L  + +   +  + 
Sbjct: 112 LD-----ADDCKRILMDLMHRNNLSGAESKELIAKAMKKISDWKNDLI-LPEQAHSTCET 165

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY-----QIALMRAEAE 220
            ED+                       + +   L   NA           ++    AE  
Sbjct: 166 PEDVQ-----------------FAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAEVR 208

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++     +  A   L+  +             D       W     ++  
Sbjct: 209 DKWQNRVRYLLVDEYQDTNTAQYILVKLLVGVMG--QFTAVGDDDQSIYAWRGAKPENMA 266

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
           +   +                                 ++       S+     +     
Sbjct: 267 LLKQDFPN--------------------------LHIIKLEQNYRSTSRILKAANCVIQN 300

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRN 397
           N  I + K+ + +     + +I   N+ +EA  +   L      N K     A++     
Sbjct: 301 NPHIFDKKLWSDKGHGEVIRIITCRNDDDEAERVVKDLLTHKLMNGKNWKDYAVLYRGNF 360

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            AR ++ +L +  I   +S G           + S L  I    D  A   ++  P    
Sbjct: 361 QARVLETQLRQMQIPYKLSGGTSFFARAEIKDVMSYLRLIINPEDDSAFLRIINMPKRAI 420

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G               ++                +L   + Q+ +  +P        E  
Sbjct: 421 GPVTLEKLGLFAQENNLS----------------LLGASSDQRLSMVLPKKAETQLHEFA 464

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +        +L+   P+   +   N               +  ++       ++   L  
Sbjct: 465 DFISTFTRELLEDDEPVPKVRQMMNE-----------AGYIDYIREQSATPAQEKSKLDN 513

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            E   +         E        ++    ++  +++ +    + E +  + +L    ++
Sbjct: 514 IENLFSSIQNLINRAEDVDEKNIESVIRKLVLLDMLEQQ---QEEEDTDKVNLLTLHAAK 570

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696
            L F  + + GL E + P   +                 AE    +    +      R  
Sbjct: 571 GLEFPYVYIMGLEEELLPHKNSI---------------AAETIEEERRLMYVGITRARQG 615

Query: 697 LIYTRSLRENNI----PTIASRWLQRLL 720
           L  T + +  N         SR+L  L 
Sbjct: 616 LTLTLAEQRKNGGQMKQMTPSRFLDELP 643


>gi|28199530|ref|NP_779844.1| exodeoxyribonuclease V gamma chain [Xylella fastidiosa Temecula1]
 gi|182682265|ref|YP_001830425.1| exodeoxyribonuclease V, gamma subunit [Xylella fastidiosa M23]
 gi|28057645|gb|AAO29493.1| exodeoxyribonuclease V gamma chain [Xylella fastidiosa Temecula1]
 gi|182632375|gb|ACB93151.1| exodeoxyribonuclease V, gamma subunit [Xylella fastidiosa M23]
          Length = 1121

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 111/899 (12%), Positives = 214/899 (23%), Gaps = 82/899 (9%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
              +L G L E  R       LL   TI +P     + L++      G  + +     + 
Sbjct: 17  ALDVLAGLLAETLRSPVPGQSLLVPDTILIPQAAMRRWLQATLATTHGVVANL--EFLTP 74

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
           G+ V     A+L    N       +   +   RL    R+       +L           
Sbjct: 75  GEFVARALDANLGAVPN------ALDTAVLHWRLYAALRDPALLTQPELAELHAYLADGD 128

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 LA+ L+   +  +     W  L   +                        R   
Sbjct: 129 LFKPWTLAEALSAAFEKYQAWRCDW--LLRWEAGADPDDPQAILW-----------RHSV 175

Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             A+         +           +G    + I  +    P   R+++T A        
Sbjct: 176 NGATHRARRIHDYLNRYGSGTAPPPQGLPARLFIFATLNISPDVLRVLATQAQVGTLHFY 235

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI---KREDVKRLGN 315
           LP                          T      ++               E V   G 
Sbjct: 236 LPTPTKEYWGDAQPFTQRLHQPTDCVTQTGENRLLHTWGAAGRDFMTVLGNYEVVHPSGE 295

Query: 316 VSNEMYGRSM----------VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
           ++                    S             +  +   +P  +     +      
Sbjct: 296 ITAYDDPEQRPGTTLDEGGLRDSLLQRLHADLFHNRSAPVPAPLPAPRLEDPSLQFHACH 355

Query: 366 NEREEAISIAIALRMSLDE------------NKKKSALITADRNLARRVKLEL-----TR 408
               E   +   LR  L+               ++ A++  D +L       +       
Sbjct: 356 TRLRELQVLHDRLRALLEPNSPEGQRFNPPLQPREIAVLAPDIDLYIPYLEAVFGGHAHS 415

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH-PLAKFGFPEKYLSRA 467
             +   ++   PL     + +   LL+          I  L+   P+A     +      
Sbjct: 416 DPLPYTLADASPLIDEPLAEVFLRLLDLPVSRFGLHEILDLLASLPMATLAGFDTQTLEI 475

Query: 468 KN-ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
               L     R   ++    + ++   D          +    +  ++ D        D 
Sbjct: 476 LRSWLTAAGARWGLDAAHRAEHQAPADDAYTWSFALDRLLLGHASGADADIAGVAAWPDL 535

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--------WFE 578
               +T L T                   L     + +       LP++           
Sbjct: 536 EGSMLTALDTLIRLLRVLANTRQRLSEALLPTQWRERLLSLLDALLPDIPTVPSGIQRPL 595

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E  + L   F+              E + +    +  +T       +  + I   +  RL
Sbjct: 596 ERLRRLIDTFATDATRAGVALPVPAEVVRMHFAALLADTDTRAPLLTGGISIGRMVPMRL 655

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
           L F  + L G+N+G +P+             L    +   +    +         F  A 
Sbjct: 656 LPFRVICLLGMNDGDFPRRDPAAGLNRLTAELGTAQRRPGDRSRRDDDCLLLLQLFSAAQ 715

Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
              ++ Y      +      S  L  L  L     +          L     L   +   
Sbjct: 716 DVFYVSYLGVDPHDGSLREPSPLLTEL--LSTAATYHADPSTAAKTLLLRHSLQPFSPTA 773

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                 P           + + I+     P A +  R L     P      D   R    
Sbjct: 774 FGADGDPRRFSYHPLWQAAAASIEGQ-RHPLAPWCPRRLPALPDPEPPLPLDSLRR--FL 830

Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
                + +++R+    PE      +        + L      + RH    +  + L HE
Sbjct: 831 SAPAEQFLQQRLGLRLPEPPQTTDEC-------DPLWLPSHGLERHRLDTLIFASLLHE 882


>gi|302858581|gb|ADL71327.1| gp67 [Mycobacterium phage Eagle]
          Length = 263

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 76/275 (27%), Gaps = 52/275 (18%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S S++KQ    PY+    R+ K    P        T +G+  H  I    +     +   
Sbjct: 9    SVSQLKQYEKCPYSYKLSRLDKAWQRPAAW-----TAQGSAVHEAIEAWERSGRTMSLEA 63

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRH---------LFHKI------SHSFLEHEEKI- 874
               + ++    +             W           +  +          +++      
Sbjct: 64   AQAVFRESYQKYINAACAITPNFEYWFASGRYGGRLDIARRYDIGLEQVGKYIDWATSHT 123

Query: 875  ------QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928
                          + +   + ++  G+ + GF D +     G + + D+KTG  P    
Sbjct: 124  EEVIWIAPDGTP-GIELGFDIDLD--GVLVRGFIDAVIETDEG-LIVRDHKTGKQP---- 175

Query: 929  AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                 D QL++ A AL      +          Y   +                 D   E
Sbjct: 176  ---GDDFQLAVYAVALA----EEYGIEPPELGDYWMGQSGKATYPY------NLTDWTKE 222

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
               +   E+   ++ G+         SE +    +
Sbjct: 223  AITEKFKELDEKVRAGKF----DPNPSEDNCRFCD 253


>gi|23014129|ref|ZP_00053963.1| COG0210: Superfamily I DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 760

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 83/748 (11%), Positives = 184/748 (24%), Gaps = 127/748 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
                  T RA +E++    ++ G       L    +   +      +           +
Sbjct: 82  QCLAVTFTNRAAREMKERVAQLVGPVSDGIWL---GTFHSLCLRILRSHAEAVG-----L 133

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           S    +L+    + + +  + +   D     P              + L   I   +   
Sbjct: 134 SGDFTVLDADDQMRVLKQVMSEAHVDPKATPP--------------QGLMATIQRWKDRA 179

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAE 218
              E   A    +            K   + + ERL  LNA       + ++      AE
Sbjct: 180 VTPEKAAADGGAEGQA---------KALYRAYQERLKSLNACDFGDLLLHVLTVFLSDAE 230

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
           A    +G    +++     +  A    +  +A        +   D       W      +
Sbjct: 231 ALARWQGRFRYLLVDEYQDTNVAQYLWLRLLAQTHRNICCV--GDDDQSIYSWRGAEVGN 288

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +      P   + +L          +     +     GR               
Sbjct: 289 ILRFEKDF-----PGARVVRLESNYRSTPHILAAASALIANNEGRLGKT----------- 332

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALITADR 396
                 L   IP+  +    +      +   EA  +   +       E     A++    
Sbjct: 333 ------LRPGIPHEPESIEKIRTKAVWDGVAEARMVVEEIETLQRRGEKLSSMAILVRAG 386

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
              R  +  L   GI   +  G      L      + L  +    D +A   +V  P   
Sbjct: 387 FQTREFEERLITTGIAYRVIGGPRFYERLEIRDAMAYLRLVVSAADGLAFERIVNTPKRG 446

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G             E V                                   +R     
Sbjct: 447 LGEAAIQTIHMAARAEQV------------------------------PLLEAARRLTGT 476

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            EL       + + I  L  +++  +S       +     +                 + 
Sbjct: 477 DELKPKPRQALAKFIEDLDRWRSLLDSMPHAELAATILDESGYVEMWKADKSPDAPGRVE 536

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             +E       +  +             +++ +  +++ ++      ++ ++ I+    +
Sbjct: 537 NLKELVAALEEYDSLA-----------SFLEHVALVMENDS----RAEADSVVIMTLHGA 581

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L FD++ L G  E V+P + A          ++   K  E+    A      A   + 
Sbjct: 582 KGLEFDSVFLPGWEEEVFPHSRA---------LAESGTKGLEEERRLAYVGLTRA--RKR 630

Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG-------QCYLDWTRKLDYTT 749
           ++ + +          S+   R +        +   +RG       +    W        
Sbjct: 631 VLVSFAANRRIYNQWKSQLPSRFVDELPDSHVERSGERGLHGSGLEESRAAWNDPAWSRA 690

Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
           +    ++              S S  K 
Sbjct: 691 RFGQPRQAAAPTSWGQAKPRESSSTFKT 718


>gi|289757034|ref|ZP_06516412.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85]
 gi|289712598|gb|EFD76610.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85]
          Length = 650

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 77/640 (12%), Positives = 172/640 (26%), Gaps = 80/640 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R   + + G+K+  +  + +              L   LN   S
Sbjct: 68  GQILAITFTNKAAAEMRERVVGLVGEKARYM-WVSTFHSTCVRILRNQAALIEGLNSNFS 126

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+ +    L   IK   P                   LA+ I  ++ E  
Sbjct: 127 IYDADDS-RRLLQMVGRDLGLDIKRYSPRL-----------------LANAISNLKNELI 168

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                 A   E         A       +        L+    +G  +A+++A  +    
Sbjct: 169 DPHQALAGLTEDSDDLARAVASVYDEYQRRLRAA-NALDFDDLIGETVAVLQAFPQIAQY 227

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANH------PNGAIVLPGLDCHIPTAIWNTITE 276
            +     +++     +  A   L+  +         P G + +   D       +   T 
Sbjct: 228 YRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCV-VGDADQSIYAFRGATI 286

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++            +P      L       +  +    +V     GR             
Sbjct: 287 RNIEDFE-----RDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRR------------ 329

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALIT 393
                    E ++         +    ADNE +EA  +A    AL    +      A+  
Sbjct: 330 ---------EKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDVAVFY 380

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              N +R ++  L R GI   +  G+          + + L  +    D +++  ++  P
Sbjct: 381 RTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRILNTP 440

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G   +                   +        +   +      NT      +   
Sbjct: 441 RRGIGDRAEACVAVYAEN----------TGVGFGDALVAAAQGKVPMLNTRAEKAIAGFV 490

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           E   EL   L D + + +  ++     +     +    +  +L    L  +    H    
Sbjct: 491 EMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARL--DNLNELVSVAHEFST 548

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
           +                +      +    +    +    +  +  +     +  + ++  
Sbjct: 549 DRENAAA----------LGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTL 598

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
             ++ L F  + + G  +G++P   A +       +  L 
Sbjct: 599 HTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLA 638


>gi|5678921|gb|AAD46807.1|AF157643_1 RecC [Mycobacterium smegmatis]
          Length = 1085

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 86/778 (11%), Positives = 206/778 (26%), Gaps = 67/778 (8%)

Query: 41  PLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN 100
           P   A+  + VP K   + L        G  + +    ++   ++ E         ++ +
Sbjct: 27  PDPFATELVLVPAKGVERWLSQRLSNRLGVCAAV--EFRNPRSLIAELTGTADDDPWSPD 84

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
             V  +  +++ + L   W   L   +          L      A+  A+ LA +     
Sbjct: 85  AMVWPLLGVIDES-LDEPWCATLATHLGHFEMGEEYELRQGRRYAV--ARRLAGLFASYA 141

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
            +    + L         + W  A          W      ++A  P       +    E
Sbjct: 142 RQR--PQLLVDWDGLPDDLAWQKAL---------WQALCERIDADPPHIRHAKTLVQLHE 190

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                 +  + + G T        L++ +A H +  + LP     +  A+          
Sbjct: 191 SPTDLPQR-LSLFGHTRLPATEVELLTALATHHDLHLWLPHPSDTLWQALSTRKGPLPRR 249

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
             +S+     HP      LL  L     +++RL    +    R        L        
Sbjct: 250 EDTSHR-DVGHP------LLATLGRDLREMQRLLPEPDTDEFRGRSEYPDTLLGWLQSDI 302

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
             D +  +  + ++    + +        +   +   L   L ++     +   ++  D 
Sbjct: 303 AADAVRPQGRHHRREDRSIQVHSCHGPSRQIDVLREVLLGLLADDPTLEPRDILVMCPDI 362

Query: 397 NLARRVKLELTRFGINIDISAG--IPLSTTLHSSI-LTSLLNAI---------------- 437
                +       G  +  + G  I LS      + +     A+                
Sbjct: 363 ETYAPLITAGFGLGDVVPRTRGAHINLSAHPAHKLRVRLADRALVQTNPLLAVAAQLLAL 422

Query: 438 -FKLNDFMAIATLVKHPLAKFGF----------PEKYLSRAKNALELVALRGNKNSYDIM 486
                    +  L +    +  F                           R       + 
Sbjct: 423 AGGRATASEVLNLAESAPVRARFGFTDDDLDAITAWTREANIRWGFDQEHRRPYGVEFLH 482

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
           +     +DR+      +   H     +    +++   V+   +    +   +   +   G
Sbjct: 483 NTWRFGIDRVLAGVAMSDDSHAWLGTTLPLDDVSSNRVELAGRFADFVEKLRRTVDQLSG 542

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              + +W       +  + L +          E  +  +          +       +  
Sbjct: 543 TRPLHEWLDALTAGIDALALADEDWPAAQMQREFAEITAR------AGDTATSLRLADVR 596

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            ++ R + G   +    ++ TL +   +  R +    + L GL++GV+P+  A +   + 
Sbjct: 597 ALLDRHLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVFPRLGAVDGDDAL 655

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
                   +       Q   D  +   T+ L+ T +             +    ++    
Sbjct: 656 ARDPMTGERDIRSEDRQLLLD-AILAATQTLVITYTGANEYSGQARPPAVPLAELIDTLK 714

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP-KPFPPLEAQPRTYSFSEIKQLINDPY 783
                           +  D     P    P +PF   +        S  ++ +   +
Sbjct: 715 ITTEDSALDVLTRHPLQPFDKRNVIPGALVPDEPFTFDQTALVAARASSGERAMRPAF 772


>gi|323357219|ref|YP_004223615.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323273590|dbj|BAJ73735.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 826

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 72/713 (10%), Positives = 174/713 (24%), Gaps = 84/713 (11%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +    R     P   + +     T +A  E+R    ++ G+K+  +  I +    
Sbjct: 67  VLTRRIASLLRTREAYP---SQILAITFTNKAAGEMRERVHQLIGQKADGM-WISTFHSA 122

Query: 85  VEEKFTADLLLSYNLNPPV---SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                  +    +          +      + RL+         +           L   
Sbjct: 123 CVRILRREAE-QFGFTKAFTIYDSGDSRALIKRLVKEHEGDSFGLTPAGTQSRISKLKNE 181

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
            A+A   A++    +          E +       Y      A  F              
Sbjct: 182 LADAESYARS--ANMSD------PAERIFVEIFSSYQRELQRANAF------------DF 221

Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH--PNGAIVL 259
            +  +   Y        A+   K     I++     +  A   L+  +      +     
Sbjct: 222 DDLIAQTVYLFRAFPQVADRYRK-RFRHILVDEYQDTNHAQYALIHELTRPVGSDAEPFS 280

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
            G                    + +    S    Y+        +I   +    G     
Sbjct: 281 SGGMMIFDADPSTGSGTDGGAASLTVVGDSDQSIYAFRGADIR-NISEFERDYPGAKVVL 339

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
           +              +     N D  + K+         +      ++ +EA  +A  + 
Sbjct: 340 LEQNYRSTQNILSAANAVISNNFDRKDKKLWTDVGAGDPIIGFTGYSQHDEAQFVADEIE 399

Query: 380 MSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
               +  +    A+     + +R ++    R  +   I  G             + L A+
Sbjct: 400 ALHKKGVDYSGIAVFYRTNSQSRALEEIFIRSAVPYKIMGGTKFYERAEIKDALAYLVAV 459

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
               D M++  ++  P    G   +       A   +  R    +   + +   +   I 
Sbjct: 460 ANPADGMSVRRILNRPRRGIGDVTETAIARYAAEHDITFRDALANSAQIGVGPKLQKAID 519

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT-----PLVTYKTNKNSTCGNLSISD 552
                          +  +   +  + + +   +        +    +        ++ +
Sbjct: 520 QLDAVLTEATAIMLPASGELAPSTSVTEGLTLLLNKSGYFDALRASKDPQDEARLENLDE 579

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              +T    +N                                          ID +T +
Sbjct: 580 LIAVTREFARNNPEG------------------------------------TVIDFLTEV 603

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                     + S ++ ++    ++ L +D + L G+ E + P   + N         + 
Sbjct: 604 TLVADADDLDDASGSVSLMTLHTAKGLEYDAVFLTGVEEDLLPHRISAN---------EP 654

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
                E+ +               L  TR+        + SR+LQ +      
Sbjct: 655 GGPQEERRLFYVGITRARKRLHVSLAMTRAQFGEVTVAMPSRFLQEIPADLID 707


>gi|315656388|ref|ZP_07909277.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. holmesii ATCC
            35242]
 gi|315492947|gb|EFU82549.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. holmesii ATCC
            35242]
          Length = 1191

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 97/1007 (9%), Positives = 233/1007 (23%), Gaps = 138/1007 (13%)

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +++  R   +  ++ IW   L    +    E+ +++ +S AN      +L D+ ++ +T 
Sbjct: 176  ITDAARYQIMTDVVQIWTGALGTKREGENAENLVNILLSLANDTN--SHLVDLAEMKQTY 233

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLK-------------IASKYWTERLVELNASSPVG 209
                     L++ +       A   L                 + + ER  EL  +    
Sbjct: 234  RSYLAAAKRLQDAEGADLNSTALRNLDTIIDTMEFGCNATNVIQAFNERKRELLMADFSD 293

Query: 210  YQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                 +R   +        +     + +     +  A  R ++ +        V    D 
Sbjct: 294  QTRETVRLVEQLSAVGESQRERFQLVFLDEFQDTSVAQMRFLAGIFRDCA---VTAVGDP 350

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD-------IKREDVKRLGNVS 317
            +     W   +  S     S      H Q     L            +       L    
Sbjct: 351  NQAIYGWRGASAASMEDFGSIFCTDPH-QLLTRTLSTSWRNDAVILTVSNRISAELAGAP 409

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN---EREEAISI 374
                 R++  ++   P  +  ++        I    +  +D+   +A        +A  +
Sbjct: 410  AVAAERNIPRNQDVQPAISKPLQARPGANPGIVYGIQTLTDLQQSQAVVNFFRLWQAQRV 469

Query: 375  AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
             +       E    +A++   +N    +   L R GI         +       ++ + L
Sbjct: 470  KLQSEGVPAEKLPTAAVLCRAKNAIPGLVESLRRAGIPYQTRGMQGILEDPGVRLVRAAL 529

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                      ++  L+          +              +              L   
Sbjct: 530  EITDNPEKSASLLLLLDRYRLGLSDLQAVGQNRHRFTPYQIVMEGGAQVSTEAQTRLEKL 589

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            R    +   + P     +        + L        +P       +             
Sbjct: 590  RGILTELKDNAPFATPLVLARLAHRLLDLDIEQQLPGSPCQAGAYVEFLNLVRDFGRTPG 649

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                  L  +   E  +      + E    +      +     ++ + +   ++      
Sbjct: 650  ATLSGFLNWLSAGEDEEASFADLDFEVDNAAVQII-TMHAAKGLEWDWVAVPNL------ 702

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                     +         +    L  D   L  L        TA      +    +   
Sbjct: 703  -NKSTFPSVRGEIWVTQRDVLPYPLRSDRDHLPELELKTQTLLTATGRVSKKKGLLETFK 761

Query: 675  KTAEKY--IGQAAHDFEMANGTRHLIY---TRSLRENNIPTIASRWLQ------------ 717
            + AE Y    ++   +      +  +        R+       S++              
Sbjct: 762  EDAEHYALREESRLAYVAFTRAKSRLLLGHCWFERQTKKGRPPSQFFLVEQDPQQHIFSD 821

Query: 718  --RLLVLGGTDFFDNLKKRGQC-------------YLDWTRKLDYTTKQPHYKRPKPFPP 762
               L   GG D                         L       +  +        P   
Sbjct: 822  ADSLASSGGADIIQPDPSTVPVVESSEEGAVGVANLLTPFNAETFAQEVARLGIETPDVE 881

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP-----DRTDRGTLF----- 812
                  T    +I+    D +       L L                  D G        
Sbjct: 882  WPDTVVTSIPDKIENPNQDRFDAGIWPALPLTQTRPDFAQAVQVTEAALDSGKFSGGISQ 941

Query: 813  -------HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII--------WR 857
                     +   L + +    T ++   +     +H  +++    +  +          
Sbjct: 942  DADEETERRLSQLLHQPQTRLGTGDLLGRISATGMAHLAQDSEGYLLQRLRPLPQQPSVA 1001

Query: 858  HLFHKISHSFLEHEEKI----------QSSIEKIFVN----------------------I 885
                   H+++  + +           +                               +
Sbjct: 1002 ARLGTYMHAWIASQLENEDTFIFDAGTEDGFTPEQRELLHKWQQRYEDLELLRRLRGPQV 1061

Query: 886  PAKMAI---ESIGIHLTGFADR-IDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
                 +   E+ G  +    D   + +++G + I D+KTG     E   + +  QL +  
Sbjct: 1062 EFDGELYVAEAGGAVIPLRIDAQFEEVQTGKIWIIDWKTGRRQTPENYAQWLH-QLGIYR 1120

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                     +     +    YI L +      +   +       ++E
Sbjct: 1121 L-YWLQEHPETPAEDIICA-YIFLNEDNPAKQLLTLQDILDELGIAE 1165


>gi|256376349|ref|YP_003100009.1| RecB family exonuclease-like protein [Actinosynnema mirum DSM 43827]
 gi|255920652|gb|ACU36163.1| RecB family exonuclease-like protein [Actinosynnema mirum DSM 43827]
          Length = 297

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 31/288 (10%)

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                            +    S S        P     R + +L   P          RG
Sbjct: 4    PTVLRMAAPTTSDRPVRRPALSPSRAGDFKQCPLLYRFRAVDRLPEKPT-----KAQVRG 58

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP---------PHIDIIWRHLF 860
            T+ H ++ +L      +  PE    + +   +   +E                  W    
Sbjct: 59   TVVHAVLEDLFALPAAERVPERARELVEPAWARVRQERPEFAELFGADQDEEQADWLTSA 118

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
             ++   +   E+  +   +     +  +  + S G+ L G+ DR+D+  +G + + DYKT
Sbjct: 119  RELLEGYFGLEDPRR--FDPESRELLVEWELPS-GVLLRGYVDRVDVAPTGEIRVVDYKT 175

Query: 921  GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
            G  P +E  +     Q+   A  L               L  + L  +  +    ++ + 
Sbjct: 176  GAAP-REHVEGKALFQMKFYALVLWRQ-----RGVVPRQLRLMYLADRQALAYSPDEGEL 229

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
               +   E   +    I+   + G+         S       ++  L 
Sbjct: 230  ARFERTLEAIWE---AILRAGRTGDF----RPNPSR-LCDYCDHKALC 269


>gi|9257172|pdb|2PJR|A Chain A, Helicase Product Complex
 gi|9257173|pdb|2PJR|F Chain F, Helicase Product Complex
          Length = 548

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/437 (12%), Positives = 122/437 (27%), Gaps = 67/437 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           ++     T +A +E+R     + G  +       I +   +       D+     +N   
Sbjct: 58  NILAITFTNKAAREMRERVQSLLGGAAEDVW---ISTFHSMCVRILRRDI-DRIGINRNF 113

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           S +    +L+ +  I + K  D  K                     + +   I   + E 
Sbjct: 114 SILDPTDQLSVMKTILKEKNIDPKKFEP------------------RTILGTISAAKNEL 155

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE--- 220
              E        +   ++      +    + + +RL+  ++       +  ++       
Sbjct: 156 LPPEQFAK----RASTYYEKV---VSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPD 208

Query: 221 --HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
             H  +     I I     +  A   L+  +A       +    D       W     ++
Sbjct: 209 VLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQN--ICAVGDADQSIYRWRGADIQN 266

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       +P   +  L       +  ++    V      R               
Sbjct: 267 ILSFE-----RDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNR------------KPK 309

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD 395
              T+  E K          +   EA NE +EA  +A  +R ++   +   +  A++   
Sbjct: 310 RIWTENPEGKP---------ILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRT 360

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L +  I   I  G+          + + L  I   +D +++  ++  P  
Sbjct: 361 NAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKR 420

Query: 456 KFGFPEKYLSRAKNALE 472
             G           A  
Sbjct: 421 GIGASTIDKLVRYAADH 437


>gi|154509660|ref|ZP_02045302.1| hypothetical protein ACTODO_02193 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799294|gb|EDN81714.1| hypothetical protein ACTODO_02193 [Actinomyces odontolyticus ATCC
           17982]
          Length = 900

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 82/783 (10%), Positives = 194/783 (24%), Gaps = 97/783 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R     + G  +  +  + +           +            
Sbjct: 134 GEILAITFTNKAAAEMRERAGALVGDDARRM-WVSTFHSACVRLLRYEHEA--------- 183

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                   A L   +        + L      ++ +         K +A  I   + E  
Sbjct: 184 --------AGLSSSFTIYDAQDSQRLIQMVLKAMDVDIKRFTP--KMVAARISDAKNELI 233

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                     +         +  +  A   + +R+   NA       +  +    E+ + 
Sbjct: 234 GPARYAETAGKD------PVSRIVADAYVEYDKRMRASNALDFDDLIMRTVDLLRENPLI 287

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG----AIVLPGLDCHIPTAIWNTIT 275
                     I++     +  A   L+  +          A +    D       +   T
Sbjct: 288 AEHYHRRFRHILVDEYQDTNHAQYVLVRALVGDGKDGVEPAELTVVGDSDQSIYAFRGAT 347

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++      + T +             L+      + + + +N +  R+       L   
Sbjct: 348 IRNIEEFERDFTGARTIL---------LEQNYRSTQNILSAANAVIARNTGRRAKNLWTA 398

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALIT 393
           + D                    + L  AD+E +EA  +   +    D        A+  
Sbjct: 399 SGDGAL-----------------ITLDAADSEHDEARFVVGEIDRLADSGVEWGDIAVFY 441

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R ++  L R GI   +  G             + L  I   +D +A   ++  P
Sbjct: 442 RTNAQSRALEELLVRQGIPYRVVGGTRFYERREIKDALAYLQVISNPDDTVAARRVLNVP 501

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIM-----------DLKSLVLDRIATQKNN 502
               G   +    A  A   ++         +            D+ +L       + + 
Sbjct: 502 KRGIGAKAEEAIAAHAAHYGISFGAALRHLWLRAGCPAGEGEGIDVDALARSTSPDEASA 561

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                    ++    + A      I           +  +     L  + +         
Sbjct: 562 DSSAPEVLGITPRAAKSAAAFWGLIETLRAAEARGASQADILEEVLDRTGYLAELRRSED 621

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                    L  L          +    + +           +++ +  + D + V  + 
Sbjct: 622 PQDASRVENLAELHSVAGAFAADAPGGTLAD-----------FLERVALVADSDQVPAEG 670

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
           E+   + ++    ++ L F  + + G+ +G +P   +    L    + +   + A   I 
Sbjct: 671 ERGGQVTLMTVHTAKGLEFPVVFVTGMEDGTFPHQRS----LGDESELEEERRLAYVAIT 726

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL---GGTDFFDNLKKRGQCYL 739
           +A     +          RS          SR+L  +               + R     
Sbjct: 727 RAREHLYLTRAA-----VRSAWGTPQEMPPSRFLDDIPAELLDLRRAATSGERMRASYGG 781

Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
            +      +      +R +   P          S        P  V     + +      
Sbjct: 782 SYGSGSYGSGSYGRSRRSEGRDPWGDTDTGAFGSGRGGASAQPAGVRKVTRMGVAPAAKP 841

Query: 800 KKD 802
            +D
Sbjct: 842 AED 844


>gi|254523343|ref|ZP_05135398.1| ATP-dependent DNA helicase Rep [Stenotrophomonas sp. SKA14]
 gi|219720934|gb|EED39459.1| ATP-dependent DNA helicase Rep [Stenotrophomonas sp. SKA14]
          Length = 658

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 58/712 (8%), Positives = 160/712 (22%), Gaps = 126/712 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T ++ +E+R    +   ++      I +   +  +    +             
Sbjct: 50  RIAAITFTNKSAKEMRERVAKRLREQDADEVTICTFHALGLKFLQIEHAAV--------G 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R   +             +      +                +++ +++   +     
Sbjct: 102 LKRGFSIFDADDAAAQIKDLMYGAKPDDI---------------EDMKNLVSRAKNAGLS 146

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E   A                     + +  RL   NA          ++   E+    
Sbjct: 147 PEQAMAAARSNREKEAAS-------VYERYQLRLTAFNAVDFDDLIRLPVQILEENPEIA 199

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +   G +++     +  A  RL+  +A        +   D       W     ++  
Sbjct: 200 MAWRERIGYLLVDECQDTNDAQYRLLKQLAGDKGNFTCV--GDDDQSIYAWRGANPENLQ 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL                            ++     +     
Sbjct: 258 QM-----GRDYPALEIIKL---------------------EQNYRCSNRVLRAANALIAN 291

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL---RMSLDENKKKSALITADRN 397
           N      K+ + Q     + + E  N   EA  +A  +     S +       ++     
Sbjct: 292 NPHEHLKKLWSDQADGERIRVWECRNSEHEAEKVAAEIAFVAQSRNVPWSDFCILFRGNF 351

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  +    I   ++ G             + L  +   +D  A    V+ P    
Sbjct: 352 QSRPLEKAMQLLRIPYHLTGGTMFLERQEVKDTLAWLRLLVNPDDDTAFMRAVQSP---- 407

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                          + +    +A               + E  
Sbjct: 408 ------------------------------KRDVGAGTLAKLAELAQEKDMPMAQAAEAI 437

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L       +        +  +    ++  D  +        +     +      +
Sbjct: 438 GALQQLPPRAANSLARFTDILRDLRAQTRQVTSGDMIRKVAKESGLLSELRQQAKEEASY 497

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +     +  L            A        +   +   +   K E  + + ++    S+
Sbjct: 498 QRRANNIEELAQWFEGGPRGATAAD------LAGQLALLSRSDKDEGGNQVRMMTMHASK 551

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-H 696
            L F  + + G           ++  L   +  D      E+        +      +  
Sbjct: 552 GLEFPYVFIVGC----------EDGVLPHQVSLDEGNLQEER-----RLLYVGITRAKIQ 596

Query: 697 LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           L  + S        ++    SR+ + +          +         +    
Sbjct: 597 LWMSYSKLTRKFGEHVRLKPSRFFEEIPAEEIQRDGADPVADAARKKERASA 648


>gi|86137696|ref|ZP_01056272.1| DNA helicase II, putative [Roseobacter sp. MED193]
 gi|85825288|gb|EAQ45487.1| DNA helicase II, putative [Roseobacter sp. MED193]
          Length = 832

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 78/741 (10%), Positives = 178/741 (24%), Gaps = 127/741 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD-----VVEEKFTADLLLSYNLN 100
            +     T +A +E++     + G+ +  +P + +        +               +
Sbjct: 77  EILAVTFTNKAAREMKERVGSMLGQPAEGMPWLGTFHSVCVKLLRRHAELISGEAGVGPD 136

Query: 101 PPV-----------------SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
             +                 S  +R      L   +     D    L  +  L       
Sbjct: 137 EVIDEVTESESPNPYDELGPSAARRRRSSVHLKSNFTILDTDDQIRLLKQ--LIRAAGID 194

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
              W  + LA IID  +      E L A +   Y                 +  RL+ELN
Sbjct: 195 EKRWPPRMLAGIIDDWKNRALTPEKLPAAEAGAYNHR-------GPELYAQYQRRLLELN 247

Query: 204 ASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
           A       + ++      ++     +     I++     +  A    +  +A        
Sbjct: 248 AVDFGDLLLHVVTIFQTHSDILAQYQRWFRYIMVDEYQDTNIAQYMWLRLLAGGHKNICC 307

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
           +   D       W      +      +      P   + +L          +     V +
Sbjct: 308 V--GDDDQSIYGWRGAEVGNILRFEKDF-----PGAKVVRLEQNYRSTEHILAAASGVIS 360

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
              GR                     L  ++   +K    V LI   +  EEA  I   +
Sbjct: 361 GNSGR---------------------LGKELWTAEKGGEKVRLIGHWDGEEEARWIGEEI 399

Query: 379 RMSLDENK-------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
             +    +          A++    +  R  +      G+   +  G      L      
Sbjct: 400 EATQRGTRGQRPIGLNDMAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERLEIRDAM 459

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
                +   +D +A   +V  P    G   +   +       V                 
Sbjct: 460 GYFRMVTSADDDLAFERVVNTPKRGLGDKAQQTIQGYARENGV----------------- 502

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
               +   +        + +     + L   L           +++              
Sbjct: 503 --SLVEGARLAVEAGAIKGKGGAALRRLVDDLARWGRMAGDADISHMELAEI-------- 552

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                +                 L   +E       F  +             +++ ++ 
Sbjct: 553 -VLDESGYTGMWQADKNPDSPGRLENLKELVKALENFENL-----------QGFLEHVSL 600

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
           ++D +      +    + I+    ++ L F  + L G  +G++P   + +         +
Sbjct: 601 VMDNDK----QDSDQKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMD---------E 647

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
             LK  E+    A   +        +   + +          S+   R +     +  + 
Sbjct: 648 SGLKGLEEERRLA---YVGITRAEEVCTISFAGNRRVFGQWQSQLPSRFVDELPEEHVEV 704

Query: 731 LKKRGQCYLDWTRKLDYTTKQ 751
           L   G     +          
Sbjct: 705 LTPPGLYGGGYGAAASRAEPI 725


>gi|320102499|ref|YP_004178090.1| Exodeoxyribonuclease V [Isosphaera pallida ATCC 43644]
 gi|319749781|gb|ADV61541.1| Exodeoxyribonuclease V [Isosphaera pallida ATCC 43644]
          Length = 1214

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 73/731 (9%), Positives = 174/731 (23%), Gaps = 52/731 (7%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA---SKYWTERLVELNASSPVGY 210
            D+ + I      +++   L  +        +    ++A    + +     E         
Sbjct: 317  DVFEGIRKRILDFQEKLELARDSLQEDAERSIRLARLAWKTVQEYQRIKREEGVLDYDDL 376

Query: 211  QIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDC 264
                +      +     +  +   +++     + P  ARL+     H   A  ++   D 
Sbjct: 377  LTTALVLLHQDSRLAAQVARSVDLVLVDEFQDTDPVQARLLEAFEQHAGEAFRLMLVGDP 436

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                  +     +      ++          L      +    +    L     E    +
Sbjct: 437  KQSIYRFRRAQPQVFQSFRNHFPDQGRM--VLTGNNRSIPELLDVFNHLFEELLEGPEDA 494

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQ----KCFSDVALIEADNEREEAISIAIALRM 380
            +       PP + D        ++ P           D         R EA  +A  LR 
Sbjct: 495  LTHGPVTPPPGSLDQYRDRCRGSEPPPGPFTLLWAKVDPKTPVEQARRAEARVLATWLRT 554

Query: 381  SLDE-----------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
             LD                        L+    N +   + EL   G+ + I  G    T
Sbjct: 555  RLDNGWPIRSSKTPNAPVVWAKPDDVVLLLRTLNNSSIYERELVHVGLEVHIVGGAAFFT 614

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                  L +LL AI    D  A+A  ++ P+                         +   
Sbjct: 615  QPEVLDLINLLAAIEDPADATALAATLRGPIFGLTDASLLAVTLVEPGNPSRRDLLRGFA 674

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
                   L   + +  +    +         +D      L++ +L               
Sbjct: 675  TGEPGDWLDDTQRSALRRARVLLE--RWRDLKDHLKVGDLMERVLFESGYEAALTAQPLG 732

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                 ++    +               +L    +    +       +  +  +  + +  
Sbjct: 733  DRRVANVRKLIRQARRFE----AGGGGRLTLADWVARLRADLRKPPREDQAVTGDEGSGR 788

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
              +  I +    E     +       +             +I   L   V P    ++  
Sbjct: 789  VRLMTIHQAKGLEFPIVVLPDLDRGLVS-----CFQKNSYVIRPDLGLVVKPPVDREDSR 843

Query: 664  LSRVMQSDLN-LKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLL- 720
                +      +++ + +       +  A   R  L+ + +   +  P   +  L     
Sbjct: 844  DGLTIAKLAGEMESRDDHAEARRLFYVAATRARDALVLSAAYDPDEEPNSPAMQLLAERY 903

Query: 721  ------VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
                     G              ++   +    T+ P  + P   P +    R    + 
Sbjct: 904  DCRTGQPRCGIANQKPTATVAAQVVNLPDQESNPTRSPLARPPSSPPQVALVTRVVQEAL 963

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
                 +D       R    + +      P            +   +      +   I  L
Sbjct: 964  SDAGSSDAPTDALARNENPNTLDSLSAQPMWLLTQEDVRLPLRVDLDPSNKPDLDPIRAL 1023

Query: 835  MKQIIDSHFEK 845
            + +++ + F  
Sbjct: 1024 VDRLLRAVFAD 1034


>gi|225174781|ref|ZP_03728779.1| recombination helicase AddA [Dethiobacter alkaliphilus AHT 1]
 gi|225169908|gb|EEG78704.1| recombination helicase AddA [Dethiobacter alkaliphilus AHT 1]
          Length = 1229

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 104/968 (10%), Positives = 236/968 (24%), Gaps = 134/968 (13%)

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            G     +     L    L       +   EL   +   R K  + +  +          S
Sbjct: 268  GSWDALREAWQGLDFKRLPAVKDCDE---ELKEQVQALRKKAKEALSKIGKT---FFERS 321

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA----ADFLKIASKYWTE 197
             A+ +     LA +I          E L +L     G +                 +  +
Sbjct: 322  AADYLREIGELAPLI----------EVLTSLVARFAGEYGQAKKMYGLLDFNDLEHHCLQ 371

Query: 198  RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
             L+  +A         ++ +EA   ++     +++       P    +++ V+       
Sbjct: 372  ILMAEDAPPG-----EIIPSEAAREVRARYEHVLVDEYQDINPVQDAILTLVSRQGETTP 426

Query: 258  -VLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---------------------THPQYS 295
             +    D       +                                       T   Y 
Sbjct: 427  NLFMVGDVKQSIYRFRLGDPGLFLERYRRYPAEKGKKERKLLLSKNFRCRHGVVTAVNYL 486

Query: 296  LAKLLDFLDIKREDVKRL------GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
              +L+     + E  +                 +   +    L     D  +    +++ 
Sbjct: 487  FRQLMTTQAAELEYDREAELVCGAHYPEPSQECKISGLVDVHLLEREQDGDHDRQGDDEG 546

Query: 350  PNIQKCFSDVALIEAD-----NEREEAISIAIALRMSLDE--NKKKSALITADRNLARRV 402
             ++     +  +I        N  + A  +      +      +    L+ A  N A R+
Sbjct: 547  EDLDALEREATVIAGQILVLLNGPDGARYVFDKEEKAYRPVTYRDIVILLRATSNSANRL 606

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
               L R GI                  + SLL  +      + +A +++ PL      + 
Sbjct: 607  VEILARHGIPAYADLSSGYFAATEVETMLSLLQVVDNPRQDIPLAAVLRSPLVGLTVEDL 666

Query: 463  YLSRAKNALELVALRG-------------NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
               R                          K +  +  L+                  ++
Sbjct: 667  AAVRQAGERNDDFFDAVLAASQQQFPGLSEKLTDFLTTLERWRTLARRETLATFITAVYR 726

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKT-NKNSTCGNLSISDWTKLTVTCLQNV---- 564
                 +                      +  ++ +  G      + +      +++    
Sbjct: 727  ESGYSDYVAGLPDGAQRQANLRALFSRARQFDRFARQGLFRFLSFIEQLRRSGEDLGTAR 786

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI--------DGE 616
             L E   +  +    + K L      + + G            ++ R +          +
Sbjct: 787  ALGEKENVVRIMSIHKSKGLEFPVVILGDLGKTFNFQDQRSEMLVHRRLGLGPLIVEPEK 846

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILG--GLNEGVWPKNTAKNPFLSRVMQSDL-- 672
             ++        L I+G  E+R      L +      E +    +A+           L  
Sbjct: 847  KLRYPSLPYLALKIMGEAETRAEEMRVLYVALTRAREQLILVGSARGLDKHLESWRQLLA 906

Query: 673  ----NLKTAEKYIGQAAHDF--EMANGTRHL-----IYTRSLRENNIPTIASRWLQRLLV 721
                 L  +E    +   D+          +      YT    E +   +     + L  
Sbjct: 907  HCGEQLPASELTRARTYLDWLGRALIRHGDVEGRTETYTWQAGEESRFRLTVWDRESLSE 966

Query: 722  LG-GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
            +    +  +   KR         K+D         R +                    + 
Sbjct: 967  IAVKREGEEEYTKRDAILSLRRVKVDTADDLREEIRTRLAYKYPYARLDLPAKLSVSELK 1026

Query: 781  DPYAVYARRILKLDFIPH----------FKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
              ++       +                 K      +RG L+H ++  L     + +   
Sbjct: 1027 RRFSELEEEEGEKKAFTPTSWSRPAFIQQKAGLSPAERGILYHQVLQHL-----DLSLSL 1081

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI--QSSIEKIFVNIPAK 888
                ++  I  + +K  +       +      +  +F   E     Q    +++   P  
Sbjct: 1082 DERGIEGQI-HYLQKAGVLAEEATDYLD--PGLIAAFFTSEAGRVVQKYRSEVYREWPFT 1138

Query: 889  MAIESIGIH---------LTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQL 937
            +++ +  I          + G  D +     G   + DYKT   P        K  + QL
Sbjct: 1139 LSLPAAEIATGNGDESLIIQGIIDLLVRTPQG-FVVIDYKTDRLPGGGLNELAKRYEEQL 1197

Query: 938  SLEAAALK 945
               A A++
Sbjct: 1198 RYYARAVE 1205


>gi|254431927|ref|ZP_05045630.1| exodeoxyribonuclease V, gamma subunit [Cyanobium sp. PCC 7001]
 gi|197626380|gb|EDY38939.1| exodeoxyribonuclease V, gamma subunit [Cyanobium sp. PCC 7001]
          Length = 1096

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 80/849 (9%), Positives = 184/849 (21%), Gaps = 53/849 (6%)

Query: 52  PTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE 111
            T    + L  +  E  G  +  +        +           +   +P  +       
Sbjct: 37  NTWPTSRWLGEQLAEELGGIAAHIRYPFPGSQLRRLVNAVLGEEAGGPDPWRATELVWPV 96

Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171
           L  L  +        ++        S          L +++AD +D              
Sbjct: 97  LEALPALVDQPAAASLRQWLYRRGGSSRELTLARWQLGRSIADALDDYALYRPDLLQQWW 156

Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231
              E    W  L    L+         L           ++               G + 
Sbjct: 157 EGEEDGSDWQALLVRQLRQRLGEKPFALKVR----EAIARLREAPWTPPADGPWRGGCLR 212

Query: 232 IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
           + G +   P    L+  V+ H    + L      +     N     S  +          
Sbjct: 213 LFGLSSMAPVQVELLHAVSAHLPVDLYLLTPCPDLWQHCTNRRARLSDAVALREPLGGDW 272

Query: 292 PQYS-------------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS- 337
              +               +LL+     +  +   G+V  E          +      + 
Sbjct: 273 VAAAGGLEARFGRLGAEFQQLLEGTGACQLGMSSYGDVFPEPTRHRARPDPATGSGPAAS 332

Query: 338 ----------DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN-- 385
                       +  D             S +          +   +   +   L ++  
Sbjct: 333 CGPAPLLRQLQRQLADPAAAPALERAPGDSSLEFHPCPGRLRQVELVRDRILQLLHDDDS 392

Query: 386 --KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL------HSSILTSLLNAI 437
              +   ++T   +    +   +        ++    L+             L +LL   
Sbjct: 393 LEPRDVLVMTPQVDGFAPLVAAVFGDRDATGVALEWRLTDRSQQEQAGLGRTLLALLRQA 452

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
            +     ++  L++    +  F  +  +       L                        
Sbjct: 453 GERLTASSLQALLESGPLRERFELEREAMHGLHRTLQQAGFRWGLDGQERGGEATGSLSW 512

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                        +      + A       L+ +   +       S              
Sbjct: 513 AIDRLLLGVVLPEQPGLAPADTAPFGAAPDLERLGRWLHLLQRLRSWLLQWRRPRSCAAW 572

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              LQ    +         +E      +    +    G  ++  A     ++   +  + 
Sbjct: 573 AASLQAALAELFGDGGEAGWELPQVLEAIDAWQQAAAGCELELTAPVVAAVLEERLAADA 632

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            +    +S  L I      R +    ++L GL+ G +P+   +  F     Q  L   + 
Sbjct: 633 GRFGH-RSGALTISALEPMRAIPHRVIVLMGLDAGCFPRQRHRPGFHHLERQRQLGDPSP 691

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
                  A    + +   HL+ T + R+                +         +     
Sbjct: 692 ADQDRY-ALLEAVLSARDHLLVTWNCRDERNGEPLQPATPVSQWMAWLKQQLKDQPGELT 750

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            L     LD        +RP                     ++ P      R L     P
Sbjct: 751 VLHPANPLDRGNFMGSKERPPACCDRRLLAARQR-------LDSPDDRLLPRQLAASQPP 803

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
             +  P                       +  +   L+ +      +  +    +D   R
Sbjct: 804 QPEAGPPAAMTFEDLRQ-----WAMHPQASWLQGLGLLPREWADVLDDLDA-ATLDERQR 857

Query: 858 HLFHKISHS 866
               + +  
Sbjct: 858 SRLLREALR 866


>gi|260892971|ref|YP_003239068.1| UvrD/REP helicase [Ammonifex degensii KC4]
 gi|260865112|gb|ACX52218.1| UvrD/REP helicase [Ammonifex degensii KC4]
          Length = 707

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 79/726 (10%), Positives = 182/726 (25%), Gaps = 123/726 (16%)

Query: 36  YDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL 95
           Y  + P     +     T +A +E+R+    +  +++  L  + +           ++  
Sbjct: 46  YRGVPPEA---ILALTFTNKAAEEMRARVTSLLPREAEDL-WVMTFHAACARLLRQEIHH 101

Query: 96  SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155
                       R   +       R  + + +++L  +     P     AI  AK     
Sbjct: 102 L--------GRDRDFAIYDEDDR-RALMRECLRELDLDEQRFPPAGIIGAISWAK----- 147

Query: 156 IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE--RLVELNASSPVGYQIA 213
                      E    +      ++    A    +  +   +   L   +          
Sbjct: 148 -----NWLVTPEI---MAERARSIYEEKVAKIFALYQQKLRQYNALDFDDLLVEAVRLFR 199

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
                     +     I++     +  A    ++ +A       V+   D       W  
Sbjct: 200 EHPEVLARWQR-RFRYILVDEYQDTNHAQYVWLNLLAQGHRNITVV--GDPDQAIYGWRG 256

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
              ++            +P+  + KL          +     +      R   + +   P
Sbjct: 257 ADIRNILSFE-----RDYPEARVIKLEKNYRSTAPILALADEIIKYNQLRKEKVLRPVKP 311

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI---ALRMSLDENKKKSA 390
                +                     +  A +E  EA  +A     LR S   + +  A
Sbjct: 312 GGELPV---------------------VYVATDEVGEANFVAETIKRLRASHGYSWRDFA 350

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++      GI   I  G+          + + L  +    D +++  ++
Sbjct: 351 VLYRTNAQSRVLEEVFLVAGIPYFIVGGVQFYARKEIKDVLAYLRLVVNPADALSLKRVI 410

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                 +         N      L   +    A   +   +P    
Sbjct: 411 NVPP--------------RGIGEGYYNRLLNFASSQGLSPALALLQAE--DIPGLPRRVK 454

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
               E  EL   L    +  + PL               + +    T      +      
Sbjct: 455 AAMRELGELLTELRSRAMGPVKPL---------------VEEILSRTGYRTHLLKEGTPE 499

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
            L  L   +E  +++  F   +              D +  +     V     ++  + +
Sbjct: 500 ALARLENLQELISVAWEFDMEV---------GGNLSDFLASIALFSEVDKYDPETDAVVL 550

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L F  + L G+ EG++P                  L        +    +  
Sbjct: 551 MTLHSAKGLEFPVVFLVGMEEGLFPHAR--------------CLGDRAALEEERRLCYVG 596

Query: 691 ANGTRH-LIYTRSLRE----NNIPTIASRWLQRLLVLG----GTDFFDNLKKRGQCYLDW 741
               +  L   RS              SR+L+ +                 +R    L+ 
Sbjct: 597 ITRAKERLYLVRSQERRLYGEARANPPSRFLREIPAELYELYSPPPVPACSERAAEDLEP 656

Query: 742 TRKLDY 747
             ++ +
Sbjct: 657 GDRVRH 662


>gi|86139559|ref|ZP_01058127.1| hypothetical protein MED193_00385 [Roseobacter sp. MED193]
 gi|85823742|gb|EAQ43949.1| hypothetical protein MED193_00385 [Roseobacter sp. MED193]
          Length = 863

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 82/740 (11%), Positives = 182/740 (24%), Gaps = 94/740 (12%)

Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLD-CHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
                +T        +      +   LD    P + W  +   + +          + Q 
Sbjct: 81  NEINLSTLPEGRARTHLTALIDLWHKLDGLPAPFSTWAHVLRSNASDALEALPILDYVQC 140

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             A   +    +                    ++ +        +        K  +   
Sbjct: 141 PFADPAETALAEALQAHHGTAPLEAALAW-RNLAAAHDAFANGALGAIQAGLGKTASEVS 199

Query: 355 CFSDVALIEADNEREEAISIAIALRMSL-----DENKKKSALITADRNLARRVKLELTRF 409
               + +    + REEA   A  ++  L     +   +   L+  D +  R ++    R 
Sbjct: 200 PDETIEIFGLRDPREEAEFAAARVQSLLDAGIVESPAQVGLLVPDDASYQRALEEAFDRV 259

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
           G+ +      P        ++  LL  + +     AIA+L   P   +        R   
Sbjct: 260 GLPLSGKPIEPALRDTVGELMILLLALLERPAPRTAIASLYISPTMPWAKETG--LRMAR 317

Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                                                   SR +      A  L+D +  
Sbjct: 318 EQMDYGW---------------------------------SRTAAGLDGPARELLDALRP 344

Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
           C TP                            +                     +     
Sbjct: 345 CSTP-----------------EQLFGRLTAIAKAAPEAGLWPKLQAIRTAVVDQIDWPLL 387

Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
           + I      + +          L     +  +  +   +  L                  
Sbjct: 388 RSIALPRPSEPSGHNRFVEGVSLFAETALPWRPVRQLIVLGLAGRTWPRPPASNPFFTE- 446

Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
           +E V  +         R  +    ++   + +  A+           L+ + +L    + 
Sbjct: 447 SEIVLIREKTGLYLAGRQQKMARGVELFRRQLCAASE------AATFLVPSCTLGGEKLA 500

Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP-------- 761
           +     L   ++   +          +    W    +         +P            
Sbjct: 501 SSTGLSLITHMMGFESSEKAIRDIHAEDQSLWPVAAEAPLPIASGGKPSVPAIGLLHLGS 560

Query: 762 -------PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                    E      S S ++ LI  P A      L         +  D    GTL H+
Sbjct: 561 DLLRLREDDETGHAPQSPSRLETLIVSPLAWLLDE-LGAKDRTWAPETLDVMALGTLLHH 619

Query: 815 IITE-LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS------F 867
           ++     +     +   I + +   +D    +       D         +  +      +
Sbjct: 620 VMEVVFPEGTKMPDQTIIANAVPAAVDDAIRRYAAWLSNDAWDTERQSLLREAYNVTSNW 679

Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK-TGDNPKK 926
           +    + Q+ +    ++   ++A +  G+ L G AD +  L  G + I D+K +    ++
Sbjct: 680 VVFLHETQAEV----LHNEIRLAGDHGGLLLRGNADCLLKLPDGRILIIDHKRSSSGGRR 735

Query: 927 ETAQKLIDPQLSLEAAALKA 946
           +   K  D Q++L  A L+ 
Sbjct: 736 DRMAKGWDLQVALYQAMLER 755


>gi|312112099|ref|YP_003990415.1| recombination helicase AddA [Geobacillus sp. Y4.1MC1]
 gi|311217200|gb|ADP75804.1| recombination helicase AddA [Geobacillus sp. Y4.1MC1]
          Length = 1238

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 82/876 (9%), Positives = 214/876 (24%), Gaps = 126/876 (14%)

Query: 186  DFLKIASKYWTERLVELNASSPV--GYQIALMRAEAEHLM------------KGTKGPII 231
              +K  ++ +  R  E          +    +    +               +     ++
Sbjct: 352  RLVKRFAEMFQARKREKGIVDFSDLEHYCLQILRHPDSADGQWLPSDAALDYRAQFIEVL 411

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT-TYST 290
            +     +      ++  VA    G  +    D       +                   T
Sbjct: 412  VDEYQDTNMVQEAILQLVAK---GGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTADGT 468

Query: 291  HP------QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
            HP        +     + L       K++   +             +   D  D  +   
Sbjct: 469  HPGMKIDLSNNFRSRAEVLHGTNFIFKQIMGETVGEIEYDETAELKYGAVDYPDSEHAAP 528

Query: 345  LENKIPNIQKCFSDVALIEADNERE---EAISIAIALRM---------------SLDENK 386
                I    +   +   ++A++      EA  +A  ++                      
Sbjct: 529  ELIVIDRNSEEGEESGELDANDLAAAQLEARMMAKKIKEIVSEPLHVFDRKAKRMRRAMY 588

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
            +   ++      A ++  E    GI +              +++ SLL  I      + +
Sbjct: 589  RDIVILLRSMTAAPQIMEEFRAQGIPVYADLSSGYFQATEIAVMLSLLKVIDNPYQDIPL 648

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A++++ P+      E  L R                +   D K   + +   +  +  + 
Sbjct: 649  ASVLRSPIVGLNENELALIRIHEKKGTFYEAMMSFLHKAADNKEEEMLQQKLRLFSKQLH 708

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL--------TV 558
             W++   +      +  +         +      K       ++ D  +           
Sbjct: 709  QWRTMARQRSLADVIWQLYRDTHFYDFVGGLPGGKQRQANLRALYDRARQYEATSFRGLF 768

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI---------- 608
              L+ +   + R          G+    +    I +   ++   +    +          
Sbjct: 769  RFLRFIERLQERGDDLGAARALGEQEDVVRIMTIHSSKGLEFPIVFVAGLARPFNTRDLY 828

Query: 609  ----------ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL----------GG 648
                               ++        + I        L  +  IL            
Sbjct: 829  GTYLLDKELGFAARFVDPKLRISYPTLPQIAIRQKKRLDYLAEEMRILYVALTRAKEKLY 888

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF--EMANGTRHLIYTRSLREN 706
            L   V       + + S   + +  L    +   +   D+        R       L   
Sbjct: 889  LVAAVKDAQKEIDKWKSTAAEEEWLLPDDVRAAARCYLDWIGRALIRHRDGQRLGDLSHV 948

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                 +   + R+ ++   +  D  ++  +        L    + P     +    L + 
Sbjct: 949  CREVASHPSVWRITIVPARELHDANQETERLDEQIATALKRGERVPTGGYAEEVQRLLSW 1008

Query: 767  PRTY----------SFSEIKQLIN---DPYAVYARRI----LKLDFIPHFKKDPDRTDRG 809
               Y          + SE+K+      +   +         L    +   +K     ++G
Sbjct: 1009 KYAYEKETLVRAKQAVSELKRHREIFGENADIMLLHSFSTPLFERPMFMREKTLTPAEKG 1068

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            T  H ++  +           +   + +++            ++         I   F  
Sbjct: 1069 TAMHIVMRHVDLTVP-ITEEAVREQIAKLVQMELLTHEQAEAVN------VSSIVAFFDT 1121

Query: 870  HEEKIQSSIEKIFVNIPAKMAIES-----------IGIHLTGFADRIDLLKSGFVDITDY 918
               K   +  ++   IP  +A+ +             I + G  D +   + G + + D+
Sbjct: 1122 EIGKRLRTASEVHREIPFSLALPAKEVYGDGVGKEGNILVQGVIDCLFADEKG-LVLIDF 1180

Query: 919  KTGDN-------PKKETAQ-KLIDPQLSLEAAALKA 946
            KT           + +         Q+ L   A++ 
Sbjct: 1181 KTDAVNRFAGGWREAKQVMLSRYQTQMQLYRRAVEQ 1216


>gi|227498096|ref|ZP_03928269.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434]
 gi|226832489|gb|EEH64872.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434]
          Length = 972

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 81/696 (11%), Positives = 183/696 (26%), Gaps = 80/696 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R     + G     +  + +           +   +        
Sbjct: 181 GEILAITFTNKAAAEMRERVAGLVGPAGERM-WVSTFHSACVRILRREHEAAG--LRSTF 237

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +I    +  RLI +   +L    K   P++              A  ++D+ + +     
Sbjct: 238 SIYDSADSQRLITLIVKELGIDSKRFTPKT-------------FANRISDLKNEL----- 279

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----A 219
               +   +  +  +        L    + +  RLV  NA       +  ++        
Sbjct: 280 ----ITPAQYAERALTSNPLERHLVEVYRAYAARLVAANALDFDDLIMRTVQLLQTKPAV 335

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN---------GAIVLPGLDCHIPTAI 270
             + +     I++     +  A   L+  +   P           A +    D       
Sbjct: 336 AEMYRRRFRHILVDEYQDTNHAQYVLVRELTGGPGTSGEGSAVPAAELTVVGDSDQSIYA 395

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
           +   T ++            +P      L       +  +     V +   GR      +
Sbjct: 396 FRGATIRNIEEFE-----QDYPAARTILLEQNYRSTQNILDAANAVISRNSGRRKKNLFT 450

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---K 387
                T                      V    AD+E +EA  I+  +    DE     +
Sbjct: 451 ESGAGTP---------------------VIGYVADSEHDEARWISSEIDRLADEEGVRPR 489

Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
             A+       +R ++    R G    +  G             + L A+   +D + I 
Sbjct: 490 DVAVFYRTNAQSRALEEAFLRSGQPYKVVGGTRFYERREIKDAIAYLRAVDNPDDDVNIR 549

Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV-P 506
            ++  P  +    +     A++A       G   +     L+ L     A   +      
Sbjct: 550 RILNVP-KRGLGDKAEAVLAEHAARYGVSFGTAVADAAGALRPLEQGEGAGDLDAGGTEA 608

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                L+   +       + +      L       +     L  S +             
Sbjct: 609 PAVEGLATRARTQVTKFHELLTGLRHQLAAGDGVADLLDSVLDASGYLAELRASDDPQDA 668

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                L  L         ++  + + +    +   A +   +      G+    K  +  
Sbjct: 669 TRVENLAELHSVAADFQAANPDAVLADFLERVSLVA-DADQLPDSADLGDEAARKAAEDG 727

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            + ++    ++ L F  + + G+ +G +P + +          +D      E+ +   A 
Sbjct: 728 QVTLMTVHTAKGLEFPVVFVTGMEDGTFPHSRS---------LADDAELAEERRLAYVAL 778

Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
                         RS   +     ASR+L  +   
Sbjct: 779 TRARERLYVTRAAVRSAWGSAQAMPASRFLDDIPTE 814


>gi|113868365|ref|YP_726854.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Ralstonia
            eutropha H16]
 gi|113527141|emb|CAJ93486.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Ralstonia
            eutropha H16]
          Length = 1200

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 94/820 (11%), Positives = 189/820 (23%), Gaps = 96/820 (11%)

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMK--------GTKGPIIIAGSTGSIPAT 242
                +     E  A      +    R  ++                 +++     + P  
Sbjct: 376  LLTRYQRHKDEQRAMDFADLEWQAARLMSDEETATYLQVRLDARYRHLLLDEFQDTNPLQ 435

Query: 243  ARLMSTV----ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
             R++       A       V    D       +     +           +         
Sbjct: 436  WRILQGWLAGYAGLGERPTVFLVGDPKQSIYRFRRADARLFGAAGEMLRDTFGATVLRTN 495

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL----ENKIPNIQK 354
                   +  D       +    GR  + +         +     +     E+K  +   
Sbjct: 496  RTRRNRAEVLDWVNAVFDTARAEGRYPLYATQTTALAGGNGPVWLLPLVEPEDKAEDAVD 555

Query: 355  CFSDVALIEADNER-----------------EEAISIAIALR------------MSLDEN 385
              ++    EA +                   EE   +A  LR                  
Sbjct: 556  DGAEDKSAEAASAHRDTLLQPRRQAGDSLRLEEGRRVAAWLRLVRDTVPVHEGGEQRPAR 615

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                 L+   +      +  L   GI         L  TL +  L++LL  +      + 
Sbjct: 616  WSDMHLLVRRKTHLADYERALREAGIPCLSPRRGGLLATLEALDLSALLAFLMTPESDLD 675

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
            +A ++K PL      +               R            +L             V
Sbjct: 676  LAHVLKSPLVGASDDDLLALARIEGEGGWWARIESGGLPEHVSDAL----------REGV 725

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
               +  L          L+D I         Y            +++        L    
Sbjct: 726  QRLRQWLRVAPHRPVHDLIDQIFHGGEVRRRYAEAAPPDIREQVLANLDAFLKLSLD--- 782

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
            LD  R      F +E + +             +  +A +        ++           
Sbjct: 783  LDGGRYPSLPKFIDELQEIRRGDEGESPDEGGMGESAED--------VEPAEDDSAFAGL 834

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPK------------NTAKNPFLSRVMQSDLN 673
              + IL    ++ L    ++L   N                  +     F +   +S+  
Sbjct: 835  DAVHILTVHAAKGLEAPFVVLLDANHSEPAADRGGILVDWPPSSPVPRHFSAYGKRSERG 894

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
            L  A  +  +AA          ++  TR+ +   +  +  R  +     G  +   +   
Sbjct: 895  LARAPLFEAEAALGERENWNLLYVAMTRAQQGLLVSGVKGRASRSGSGEGNAEIAGSWYV 954

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK---QLINDPYAVYARRI 790
            R Q          Y  +    +   P P   ++P  ++   ++    +       +    
Sbjct: 955  RLQAAGVGEMVPAYPGELADAQDQAPMPARLSEPVRFTDFRLRYRDAVDARQGIGFEEEG 1014

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
               D       +      G L H ++  L +             +  ++           
Sbjct: 1015 EAEDEPDGIVFNAAAARHGELVHALLERLTRY---PEAFAGVPGIDTVLRWFPLTGAHTG 1071

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL---TGFADRIDL 907
                 WR    +   +          ++  +              + L    G   RID 
Sbjct: 1072 AARQAWRQQVAQALEAVAAML--RAPALAPLL--GAGDARSARNEVELYDARGRLLRIDR 1127

Query: 908  LK--SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
            L      V I DYK           +    QL   AAAL 
Sbjct: 1128 LVEFDDRVVIVDYK---LRLLPQEHEAYRAQLGRYAAALA 1164


>gi|332285468|ref|YP_004417379.1| DNA helicase [Pusillimonas sp. T7-7]
 gi|330429421|gb|AEC20755.1| DNA helicase [Pusillimonas sp. T7-7]
          Length = 639

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 97/715 (13%), Positives = 178/715 (24%), Gaps = 118/715 (16%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
           P S   R +  A +   LVE+             +     T RA  E+RS  I+I  +  
Sbjct: 36  PGSGKTRVL-TARIARLLVESLDDR-------WRILALTFTNRAADEMRSRIIDIVPEAE 87

Query: 73  TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
             L  I +      E    +          +  I+    +          L   + +   
Sbjct: 88  DRL-FIGTFHSFAGEILRQNG--------TLLGIKTDFRIYSTTADRIELLERAMMEAGV 138

Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
           E   S            + +  ++D +       ++   L            A  +    
Sbjct: 139 ERSFSP-----------EKVLAVLDRLRDRLVGPDECERLFENPER------AASVSKIY 181

Query: 193 KYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
             +   L+  NA                              I +     +  +  RL+ 
Sbjct: 182 AAYENFLLNENAVDFPALIFKAHLLFNKFPAIARKYSTGYKYICLDEFQDTNSSQYRLLR 241

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            + +  +   V    D       WN  + K               Q+        L +  
Sbjct: 242 ALTDSSDKN-VFAVADDDQIIYQWNGASHKRLE------------QFRNDYEPSSLQMPT 288

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                   V+      S  I +S         +N   + ++          V L+    +
Sbjct: 289 NFRCPAEVVALANRLVSHNILRSPGKSPLEAGKNQLNINDR----------VRLLHFSGQ 338

Query: 368 REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
             EA  IA  +         K A+I   + L   V+  +   GI   I+       +   
Sbjct: 339 ATEAAGIAQDIADRHGSAISKVAVIARTKALLEGVQRAMNDRGIQAQIAQRRDSFASPPY 398

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             L S LN   +  D       V+                            K     +D
Sbjct: 399 VWLHSALNLANRRTDQRIFLVFVES-------------------------SAKLMGVNLD 433

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
            ++LV     T  +       ++R +E+  E    L+D     +   + Y +    T   
Sbjct: 434 FQNLVSLAATTHGDLLRTWVSEARKTEDLGEPIQRLLDITASQLAERLDYGSFVKQTVSF 493

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
                               E               L+   +  I   + ++    E   
Sbjct: 494 ------------FKSQQEGLEAEFPQFDEDTRAWAELAREITSSIGASAGLETFLQEL-- 539

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                      K      + L +L    S+   FD + + GL E V          +   
Sbjct: 540 -------DLRSKEPPLGPNVLPLLTVHGSKGNEFDHVYVVGLAEDV----------MPSF 582

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
                   + E    +      +      L  + S    N     SR+L  + +L
Sbjct: 583 QSKSKGDNSPEMEEERRNCFVAITRCMESLTLSYSDEYRNWAKAPSRFLIEMGLL 637


>gi|323946542|gb|EGB42566.1| exodeoxyribonuclease V [Escherichia coli H120]
          Length = 483

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/488 (10%), Positives = 108/488 (22%), Gaps = 63/488 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         +      +L  L+    ++    +        L+  
Sbjct: 63  PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                   L+   AD+ D        W  L   +                 L  A   +T
Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
            +L +             +                + I G +   P   + +  +  H  
Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
             ++      +    I +              ++                          
Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
              LL        D   L +  +        +                +           
Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLDSSQELDAFVDVMPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                 +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +        +         +   IS      +        SLL+          +  L+ 
Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPNSRFVSEDVLALLD 475

Query: 452 HPLAKFGF 459
            P+    F
Sbjct: 476 VPVLAARF 483


>gi|148241321|ref|YP_001226478.1| UvrD/REP helicase [Synechococcus sp. RCC307]
 gi|147849631|emb|CAK27125.1| UvrD/REP helicase [Synechococcus sp. RCC307]
          Length = 784

 Score = 79.2 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/625 (8%), Positives = 149/625 (23%), Gaps = 90/625 (14%)

Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
            + +    + L A    +                + + + L   NA       +  ++  
Sbjct: 182 AKNQGWLPDQLEANSEGQR-------GKLTADVYRRYRKALAANNALDFDDLLLLPVQLL 234

Query: 219 AEHLM-----KGTKGPIIIAGSTGSIPATARLMS---------TVANHPNGAIVLPGLDC 264
            ++             +++     +      L+           + N  NG  V    D 
Sbjct: 235 QQNEQVRSYWHRRFRHVLVDEYQDTNRTQYDLIKLLVTGGQDPQLYNEWNGRSVFVVGDA 294

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +             +         +  + +  L+        +   +N +   +
Sbjct: 295 DQSIYSFRAADFTILMGFQQDFGDQAADDAT--RTMVKLEENYRSTATILEAANALIANN 352

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR----M 380
                            ++ ++  +   +     ++L   D+E  EA ++   +R     
Sbjct: 353 -----------------SERIDKVLRPTRGEGELISLTRCDDEIAEAEAVVHRMRMLDAA 395

Query: 381 SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
             + +    A++      +R ++  L R+ I   +  G+          + + L  +   
Sbjct: 396 HPELSWGSMAVLYRTNAQSRAIEESLVRWRIPYVVVGGLRFYDRREIKDVLAYLRLLINP 455

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
            D +++  ++  P                       R       I  L            
Sbjct: 456 ADSVSLLRVINVP-----------------------RRGIGKTTIQRLNDAANQLAIPLW 492

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
           +          L     +  +   + I          +        +  I    + +   
Sbjct: 493 DVVSDGEAVRSLGGRSAKGLLQFCELING-------LREQAQVAPPSELIQQVLEKSGYL 545

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
            + +              +E    +  + +  E G      A                  
Sbjct: 546 RELITEATDEAEERRRNLQELVNAALQYQEENEEGDLEGFLASA--------ALASDADS 597

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
           K   +  + ++    S+ L F  + L GL +G++P   + +   S   +  L      + 
Sbjct: 598 KDTAADRVTLMTLHSSKGLEFPVVCLVGLEQGLFPSYRSLDDPASLEEERRLCYVGITRA 657

Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
             +        +          +R    P + S +L  L                     
Sbjct: 658 KERLF-----LSHASERRLWGGMR---EPAVPSIFLAELPEALVQGDIPRSGGAALRREQ 709

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEA 765
              +L    +     + +       
Sbjct: 710 RLERLTRVDRAEAQPKARVSAARSW 734


>gi|78049999|ref|YP_366174.1| exodeoxyribonuclease V, gamma chain [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78038429|emb|CAJ26174.1| exodeoxyribonuclease V, gamma chain [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 1184

 Score = 79.2 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 107/957 (11%), Positives = 232/957 (24%), Gaps = 124/957 (12%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
            E  R  P  PLL   V + +P     + L+S      G  + +     + G+ V     
Sbjct: 73  QELRRPMPGQPLLQPEV-VLIPQVAMRRWLQSTLAAEHGVAANL--EFLTPGEFVARALE 129

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
            +L  + +     +   RL                    L P +             LA 
Sbjct: 130 RNLGAADDDLDMATTQWRL-------YAALQSDLGSDAALAPLAGYLSDGDALKPWALAG 182

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            LA + +  +   + W            + W   AD     ++ W               
Sbjct: 183 ELASVFEKYQAWRRDW-----------LLRWEAGADPDDPQARLWRSI--ATGRQYRARR 229

Query: 211 QIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
               +   A       +G    +         P   R+++T A        LP       
Sbjct: 230 IGQYLDRHARADGPLPQGLPPRVFAFAILNISPDVLRVLATQARVGTLHFYLPTPTQGYW 289

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
             +      +  +            Q     LL        D   L      ++  + + 
Sbjct: 290 GDLQTLWQRRREDGAVQLFAE----QVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEIA 345

Query: 328 SKSFLPPDTSD--------------------MRNTDILENKIPNIQKCFSDVALIEADNE 367
           + +                             R     E  +P +      + +      
Sbjct: 346 AYADPLESGRRTLADGGLGDSLLRRMQSDLFHRRAPAAEAVLPAVNLHDPSLQVHACHTR 405

Query: 368 REEAISIAIALRMSLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDI 415
             E   +   LR  LD+         ++ A+++ + +        +         +   +
Sbjct: 406 LRELQVLHDQLRALLDDARFDPPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYAL 465

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY--------LSRA 467
           +   PL++   + +  +LL           I  L+                        A
Sbjct: 466 ADASPLASESLAEVFLTLLGLPIARFGLHEILDLLASAPIAEAAGLDEAGLERLRSWLHA 525

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV-LLVDH 526
             A   +     +      D        +            +               +  
Sbjct: 526 AGARWGLDAAHRRQHQAPGDDAYTWRFALDRLLLGHASGADEDIDGVAPWPQLEGSALAA 585

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           +   +  L   + ++ +    ++  +W +  +  L+ +              +  + L  
Sbjct: 586 LDTLLRLLRVLERHQAALAEAMTPVEWRERLLGLLEALIPTMPTAPRAQRALDRLRALIV 645

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            F++             E +      + GE+       +  +     +  RLL F  + L
Sbjct: 646 QFARDAMRAEYAGKVPAEVVRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRVICL 705

Query: 647 GGLNEGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
            G+N+G +P+             L    +   +  T E         F  A    +L Y 
Sbjct: 706 LGMNDGDFPRRDPAAGLNRLTAELGTERRRHGDRSTREDDRFLFLQLFASAQDVFYLSYL 765

Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFD------------------------------- 729
            +   +      S  +  LL                                        
Sbjct: 766 GADARDGSVREPSVLVSELLASAAQYHAASNALDTLVVRHPLQPFAAAAFGALGDESDAG 825

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS----EIKQLINDPYAV 785
              +R      W   +D    Q     P     L A+      S     +++L+ DP   
Sbjct: 826 ADPRRFSYRRQWRPAVDSLVGQRQPLAPWVAGALPAEGIALPASMSIDALRRLLTDPAGQ 885

Query: 786 YARRILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
           + R  L +       +D D        RG   + +  ++    +  +T  +   ++    
Sbjct: 886 FLRHRLGMRLPDPAGEDADLEPLLAPTRGLDQYGLQQQIFDAALAGDTEHLYARLRA--- 942

Query: 841 SHFEKENLPPHIDIIWR-HLFHKISHSFLEHEEKIQSSIEKIFV---NIPAKMAIES 893
                        +  R       + +F +   +  +   ++ V    I     +  
Sbjct: 943 RALLPSGPLGRRQLDERVAQLRPYADAFRQWRGESPAQSRRLQVQIDEIELHGRVPG 999


>gi|227509969|ref|ZP_03940018.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190575|gb|EEI70642.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 743

 Score = 79.2 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 63/693 (9%), Positives = 177/693 (25%), Gaps = 120/693 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           ++     T +A +E+R    ++            + +   +       ++          
Sbjct: 56  NILAITFTNKAAREMRERVSKLLDESGDDVW---VSTFHALCVRILRRNIDQL------- 105

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               R   +A      R  +  ++++L  +     P +  ++I  AKN  D++       
Sbjct: 106 -GFNRAFTIAD-TSEQRTLVKRVLRELNIDPKKFDPRAVLSSISNAKN--DLL------- 154

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              +   A  +  +          +      +   L +  +       +  +    +   
Sbjct: 155 -TPKAFKAQADNDFD-------QIVADVYARYQAELRQNESLDFDDLIMTTIELFDQFPD 206

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I +     +  A  RL++T+A       V+   D       W     ++
Sbjct: 207 VLSYYQDKFHYIHVDEYQDTNEAQYRLVNTLAKKSKNICVV--GDADQSIYGWRGANMQN 264

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +                                  +              +   
Sbjct: 265 ILDFKEDYPD--------------------------AHVTLLEQNYRSTKTVLDAANAVI 298

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITAD 395
             N +  +  +    +    ++      E +EA  +   ++  + + K+     A++   
Sbjct: 299 AHNLNRADKNLWTENEQGEKISYYRGQTENDEARYVVAKIQEEMGKPKRNYGSFAILYRT 358

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L +  I   +  G             + L  +    D M+   ++  P  
Sbjct: 359 NAQSRVIEETLLKANIPYTMVGGHKFYDRKEIRDALAYLTLLGNPRDSMSFERVINEPKR 418

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G       R              N +    L++     +A + ++             
Sbjct: 419 GIGETSLEKLRTFA-----------NDHGWSLLEASKNIDLANEISSRAKNS-------- 459

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                      I      +       ++        +    +            +    L
Sbjct: 460 -----------ISMFEQIISDVAKKLDTMTITELTEEILDKSGYLSTLKSSKSLQAQTRL 508

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              EE  +++  + +               ++ ++ L          EK+S + ++    
Sbjct: 509 ENLEEFISVTQKYDQDNPDQGGQD----NLVNFLSDLALVSDQDDLDEKTSEVTLMTMHA 564

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + + G+ EG++P + A               +   +   +    +      +
Sbjct: 565 AKGLEFPVVFIMGMEEGLFPLSRA--------------AQDESELQEERRLAYVGITRAK 610

Query: 696 H-LIYTRSLRE----NNIPTIASRWLQRLLVLG 723
             L  T +              SR++  +    
Sbjct: 611 EKLYLTNAYSRMLYGRRQNNPESRFVNEIKPEL 643


>gi|307578541|gb|ADN62510.1| exodeoxyribonuclease V gamma chain [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 1121

 Score = 79.2 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 111/899 (12%), Positives = 214/899 (23%), Gaps = 82/899 (9%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
              +L G L E  R       LL   TI +P     + L++      G  + +     + 
Sbjct: 17  ALDVLAGLLAETLRSPVPGQSLLVPDTILIPQAAMRRWLQATLATTHGVVANL--EFLTP 74

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
           G+ V     A+L    N       +   +   RL    R+        L           
Sbjct: 75  GEFVARALDANLGAVPN------ALDTAVLHWRLYAALRDPALLTQPALAELHAYLADGD 128

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                 LA+ L+   +  +     W  L   +                        R   
Sbjct: 129 LFKPWTLAEALSAAFEKYQAWRCDW--LLRWEAGADPDDPQAILW-----------RHSV 175

Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             A+         +           +G    + I  +    P   R+++T A        
Sbjct: 176 NGATHRARRIHDYLNRYGSGTAPPPQGLPARLFIFATLNISPDVLRVLATQAQVGTLHFY 235

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI---KREDVKRLGN 315
           LP                          T      ++               E V   G 
Sbjct: 236 LPTPTKEYWGDAQPFTQRLHQPTDCVTQTGENRLLHTWGAAGRDFMTVLGNYEVVHPSGE 295

Query: 316 VSNEMYGRSM----------VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
           ++                    S             +  +   +P  +     +      
Sbjct: 296 ITAYDDPEQRPGTTLDEGGLRDSLLQRLHADLFHNRSAPVPAPLPAPRLEDPSLQFHACH 355

Query: 366 NEREEAISIAIALRMSLDE------------NKKKSALITADRNLARRVKLEL-----TR 408
               E   +   LR  L+               ++ A++  D +L       +       
Sbjct: 356 TRLRELQVLHDRLRALLEPNSPEGQRFNPPLQPREIAVLAPDIDLYIPYLEAVFGGHAHS 415

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH-PLAKFGFPEKYLSRA 467
             +   ++   PL     + +   LL+          I  L+   P+A     +      
Sbjct: 416 DPLPYTLADASPLIDEPLAEVFLRLLDLPVSRFGLHEILDLLASLPMATLAGFDTQTLEI 475

Query: 468 KN-ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
               L     R   ++    + ++   D          +    +  ++ D        D 
Sbjct: 476 LRSWLTAAGARWGLDAAHRAEHQAPADDAYTWSFALDRLLLGHASGADADIAGVAAWPDL 535

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--------WFE 578
               +T L T                   L     + +       LP++           
Sbjct: 536 EGSMLTALDTLIRLLRVLANTRQRLSEALLPTQWRERLLSLLDALLPDIPTAPSGIQRPL 595

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E  + L   F+              E + +    +  +T       +  + I   +  RL
Sbjct: 596 ERLRRLIDTFATDATRAGVALPVPAEVVRMHFAALLADTDTRAPLLTGGISIGRMVPMRL 655

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
           L F  + L G+N+G +P+             L    +   +    +         F  A 
Sbjct: 656 LPFRVICLLGMNDGDFPRRDPAAGLNRLTAELGTAQRRPGDRSRRDDDCLLLLQLFSAAQ 715

Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
              ++ Y  +   +      S  L  L  L     +          L     L   +   
Sbjct: 716 DVFYVSYLGADPHDGSLREPSPLLTEL--LSTAATYHADPSTAAKTLLLRHSLQPFSPTA 773

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                 P           + + I+     P A +  R L     P      D   R    
Sbjct: 774 FGADGDPRRFSYHPLWQAAAASIEGQ-RHPLAPWCPRRLPALPDPEPPLPLDSLRR--FL 830

Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
                + +++R+    PE      +        + L      + RH    +  + L HE
Sbjct: 831 SAPAEQFLQQRLGLRLPEPPQTTDEC-------DPLWLPSHGLERHRLDTLIFASLLHE 882


>gi|114565925|ref|YP_753079.1| superfamily I DNA/RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336860|gb|ABI67708.1| ATP-dependent DNA helicase PcrA [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 696

 Score = 79.2 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/553 (10%), Positives = 136/553 (24%), Gaps = 95/553 (17%)

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATAR 244
                +  RL  LN        +  +R   ++       +G    I++     +  +   
Sbjct: 169 RVFSLYNSRLKNLNVLDFEDLIVLCIRLFQQNPDVLEKYQGWFQYIMVDEYQDTNYSQYF 228

Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
               +A+      +    D       W      +            +P   L KL     
Sbjct: 229 WARLLASRH--HNIFVVGDPDQSIYSWRGAEPYNIKRF-----LGDYPDSRLIKL----- 276

Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                                         +     N +  E ++   +     +    A
Sbjct: 277 ----------------EMNYRSSGNILSAANAVICNNEEREEKQLYTQKGQGEKLVHFCA 320

Query: 365 DNEREEAISIAIALRMSLD---ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +  +EA  IA  +   L     + +  A+       +R ++  L    I   I      
Sbjct: 321 GDSFQEARFIADEINQLLRSENRHFQDFAVFYRTHAQSRALEEALLYRNIPYHIVGARKF 380

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                   + + L  +   ND ++   ++  P                       R    
Sbjct: 381 YERKEIKDILAYLRLVSNNNDLLSFERVINVP-----------------------RRGIG 417

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              +  +K+   +R  +  +              + E    +   +L  +          
Sbjct: 418 EKTLGRIKAYSEERGISLLDVL-----------AEAESIPGIGRKMLTAMEDFYGMLKYL 466

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                  S +   +L    ++     E  K        + +       ++       +  
Sbjct: 467 TDLVT--SGASLMELLEQVIEVTGYIEELKKSKA---TDAEARIENLQELRSLVVEFERE 521

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
             + ++             +++ S  + ++    ++ L F  + + GL EGV+P   ++ 
Sbjct: 522 GGQGLEEFLSQTALVQESDELDNSDHVLLMTLHGAKGLEFPVVFITGLEEGVFPSYRSQ- 580

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRE----NNIPTIASRWL 716
                         TAE+   +    +         L  + +L             SR+L
Sbjct: 581 --------------TAEEMEEERRLCYVGITRAQERLYLSHALSRLLYGYERSNPPSRFL 626

Query: 717 QRLLVLGGTDFFD 729
             +          
Sbjct: 627 YEIPEELLLSPQQ 639


>gi|240138235|ref|YP_002962707.1| putative ATP-dependent exodeoxyribonuclease (Subunit A)/helicase
            [Methylobacterium extorquens AM1]
 gi|240008204|gb|ACS39430.1| putative ATP-dependent exodeoxyribonuclease (Subunit A)/helicase
            [Methylobacterium extorquens AM1]
          Length = 1116

 Score = 79.2 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 84/813 (10%), Positives = 218/813 (26%), Gaps = 66/813 (8%)

Query: 145  AIWLAKNLADIIDIIETE-----EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
             + L   + +++   +          ++DL A           +     +       +  
Sbjct: 334  LVRLVVQVREVLRRYQERKRAGALLDFDDLIASAATLLRDHEEVRQALGRRYRHVLVDEF 393

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
             + +        +      A+         ++  G+   +    + +           V 
Sbjct: 394  QDTDPLQAEILWLLCGELPADAAGATWTDRVLRPGALFLVGDPKQAIYRFRGADVSTYVQ 453

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
                      I     +   +++++  +  +   +   +  + L ++ +      +  +E
Sbjct: 454  ARDC------IRAKSPDDVISVSTNFRSCRSILAFVDNRFREVLQVEGQPGYVALDPFHE 507

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
             + R   ++   +P    D + +                  LI           +  +  
Sbjct: 508  DHDRGPCVAALDIPAAEGDGKPSAGALRDAEAEAVADLCARLIG-------QRLVTCSRN 560

Query: 380  MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
             +        AL+    +   R +  L   GI +   AG           L +L   +  
Sbjct: 561  GTRILQAGDIALLAPSGSDLWRYEEALEARGIPVSTQAGKGFFRRQEIQDLIALTRVLAD 620

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-SLVLDRIAT 498
              D +A+  L++ P       ++ L    +AL     R +      + L  + V   +A 
Sbjct: 621  PRDTLALGALLRGPAVG--LTDEELLDLVDALPRDPERPDARQKLRLGLDIAHVAHPVAR 678

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
            +         +  L     ++    VD I   + P+V  + + ++     ++  + +++ 
Sbjct: 679  EVIGRLQVLARRALGTTPHDILSQAVDAIR--LRPVVRQRHDGHAERALANVDLFLEMSR 736

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                       R +   W     +T+           S    +A + ++    +    + 
Sbjct: 737  PYAVRGLRAFARAMKVAWDGR-TRTVEGRPDAQEAAVSLFTMHASKGLEWPVVIPINTST 795

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
            + K    + +                     +                  +  L+ +  E
Sbjct: 796  RTKAVSGALV---------------------DRPANCLYCPVFGVRPAGYEDALDRERRE 834

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                +    +  A   R  +     R        S      L L      D  +   +  
Sbjct: 835  VGNERVRLWYVAATRARETLVL--PRFPEPSDRTSWASVIALGLDAVPAIDLERLPLRPM 892

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
               T  L+  T++                             D   V        + +P 
Sbjct: 893  AAVTETLNEQTREVFASEAATVARHRRLTWIVPS-------RDDAPVPGFEDAGSEPLPV 945

Query: 799  FKKDPDR-----TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
              +          +RGT+ H ++ E++   +++   +      + +  H           
Sbjct: 946  PTEAVSAPLQGGRERGTVIHKLLEEILTGELDER--DGLEARARFLAGHLGPYGEDGRPA 1003

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM--AIESIGIHLTGFADRIDLLKSG 911
             +            L    ++    E++   +P     A++       G AD +   + G
Sbjct: 1004 ALDPADIAACVARALALP-QVAGIRERLRAEVPVYAYEALDEEERATAGVADALACDERG 1062

Query: 912  FV-DITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
                + D+K+   P  + A      Q++   AA
Sbjct: 1063 QPDVVVDWKSDVAP-GKDALLDYRAQVARYLAA 1094


>gi|302518122|ref|ZP_07270464.1| RecB family exonuclease [Streptomyces sp. SPB78]
 gi|318059110|ref|ZP_07977833.1| RecB family exonuclease [Streptomyces sp. SA3_actG]
 gi|318079114|ref|ZP_07986446.1| RecB family exonuclease [Streptomyces sp. SA3_actF]
 gi|302427017|gb|EFK98832.1| RecB family exonuclease [Streptomyces sp. SPB78]
          Length = 278

 Score = 79.2 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 79/266 (29%), Gaps = 45/266 (16%)

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             P     R I +L          +   RGTL H ++  L      + T E    +     
Sbjct: 3    CPLLYRFRVIDRLPEK-----PSEAATRGTLVHAVLERLFDAPAAERTAERATALLPGQW 57

Query: 841  SHFEKENLPPHI----------------------DIIWRHLFHKISHSFLEHEEKIQSSI 878
                                                 W     ++   +   E+  +  +
Sbjct: 58   EKLRAARPELDALFTAVAAADGDGDGAEGTAGERLARWLASAERLVERWFTLEDPTR--L 115

Query: 879  EKIFVNIPAKMAIESIGIHLTGFADRIDLLK-SGFVDITDYKTGDNPKKETAQKLIDPQL 937
            E     +  + +++S G+ L G  DR+D+   +G V I DYKTG  P+     +    Q+
Sbjct: 116  EPAEREMFVETSLDS-GLRLRGIIDRVDIAPGTGDVRIVDYKTGKAPRP-QYAEGALFQM 173

Query: 938  SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
               A  +       +  R++  L Y+        D +  D          E+  + L  +
Sbjct: 174  KFYALVVWR--LKGVVPRRL-QLVYLGSGDVLAYDPVPGD---------LERVERKLHAL 221

Query: 998  VTLLQNGEQPFISHLRLSEKSNIQSE 1023
               ++          R S+      +
Sbjct: 222  WRAIEEATASGDWRPRPSK-LCGWCD 246


>gi|282598672|ref|YP_003358769.1| gp66 [Mycobacterium phage Peaches]
 gi|255928199|gb|ACU41817.1| gp66 [Mycobacterium phage Peaches]
          Length = 263

 Score = 79.2 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 76/275 (27%), Gaps = 52/275 (18%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S S++KQ    PY+    R+ K    P        T +G+  H  I    +     +   
Sbjct: 9    SVSQLKQYEKCPYSYKLSRLDKAWQRPAAW-----TAQGSAVHEAIEAWERSGRTMSLEA 63

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRH---------LFHKI------SHSFLEHEEKI- 874
               + ++    +             W           +  +          +++      
Sbjct: 64   AQAVFRESYQKYINAACAITPNFEYWFASGRYGGRLDIARRYDIGLEQVGKYIDWATSHT 123

Query: 875  ------QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928
                          + +   + ++  G+ + GF D +     G + + D+KTG  P    
Sbjct: 124  EEVIWIAPDGTP-GIELGFDIDLD--GVLVRGFIDAVIETDEG-LIVRDHKTGKQP---- 175

Query: 929  AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                 D QL++ A AL      +          Y   +                 D   E
Sbjct: 176  ---GDDFQLAVYAVALA----EEYGIEPPELGDYWMGQSGKATYPY------NLTDWTKE 222

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
               +   E+   ++ G+         SE +    +
Sbjct: 223  AITEKFKELDANVRAGKF----DPNPSEDNCRFCD 253


>gi|121535716|ref|ZP_01667519.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans Nor1]
 gi|121305681|gb|EAX46620.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans Nor1]
          Length = 1246

 Score = 79.2 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 83/844 (9%), Positives = 180/844 (21%), Gaps = 125/844 (14%)

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 ++     +++     +      ++  V+  P+        D       +      
Sbjct: 384  AVALALREKYEEVLVDEYQDTNAVQETILELVSR-PDRPNRFMVGDVKQSIYRFRLAEPG 442

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKR------------------------------ 307
                  +    +         L      +                               
Sbjct: 443  LFLEKYNRYPAAAGGSERRIDLAQNFRSRPGILAAVNFLFSQLMTPRAAEMGYGAAEALN 502

Query: 308  --------EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
                    + +   G V   +  ++  ++ +       D       +            V
Sbjct: 503  PGPDYPPCDQLTLAGPVEVHLINQAEAVAAAPAADVVEDEAEQQDADAGGDEPANSSELV 562

Query: 360  ALIEADNEREEAISIAIALRMSLDE----------------NKKKSALITADRNLARRVK 403
               E      EA  IA  L    +                  +    L+   +  A  + 
Sbjct: 563  TAQELTAFEREAWLIARRLLALKEAGHVVYDKHDKAYRPLAWRDIVILLRTVQGKAGVLL 622

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L + GI                 ++ SLL  I      + +A +++ PL      +  
Sbjct: 623  DVLRQAGIPAYADVDGGYFEETEVQVMLSLLAVIDNPRQDIHLAGVLRSPLVGLTAGDLA 682

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
              R     +L          DI +     +     + +       +  ++E    +    
Sbjct: 683  AIRLCKDGDLWTALTAAAGADIAEPLRQKIGVFLERLDRWRSLARRRGVAELIWSIYRET 742

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWT---KLTVTCLQNVCLDEHRKLPNLWFEEE 580
              +      P    +        + +        +     L+ +     R          
Sbjct: 743  GYYDYIGGMPGGALRQANLRVLYDRARQFEATNFRGLFRFLRFLERLRDRGSDMAVARAL 802

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDI-----ITRLIDGETVKPKIEKSSTLFILGTLE 635
            G+    +    I     ++   +   D+     +    +      ++     +      +
Sbjct: 803  GEGEDVVRVMSIHKSKGLEFPVVVLADLGKQLNLRDTQELVLCHKELGLGPKVIRPDLRD 862

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL-----KTAEKYIGQAAHDFEM 690
            S        I   L      +            +  L L     K A++     A     
Sbjct: 863  SYPTLARWGIEHKLTLEAKAEELRILYVALTRAREKLILVGSVKKLADRCSDWCAMVGWQ 922

Query: 691  ANGTRHLIYTRSLRENNI--------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
            A      + T +    +         P  A            T     L    Q      
Sbjct: 923  AQALPDALITDAKNYLDWLGPAIVRHPGGAPLRALAGCDETPTAKLAALNAAWQVITHAA 982

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI----------------------- 779
              ++          P      E +P     S                             
Sbjct: 983  DSINPVAPAQPADNPLAVCLKELKPLPGGDSAWVAARLDWRYPYAAAVGQPAKLTVSEIK 1042

Query: 780  -------NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
                    D    Y  R+                + GT  H ++  L     N       
Sbjct: 1043 RRFALADQDGEQWYPPRLAARPRFIQTAGKLTAAEVGTAMHTVMQHL-----NLAGDMSA 1097

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
              +++ ++     E L P            I+  F     +   +       +     + 
Sbjct: 1098 SGVRRELERLVAAEILLPEQAA--AVDVEAIAAFFTSPLGQRLLNAAWRRRELAFCQVLP 1155

Query: 893  -----------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
                          + + G  D +     G + + DYKT          +  D QL L A
Sbjct: 1156 AASIDPALAGTDETVFIQGVVDCLFAEADG-LILIDYKTDQVKDGFELVERYDVQLKLYA 1214

Query: 942  AALK 945
            AA++
Sbjct: 1215 AAME 1218


>gi|37680798|ref|NP_935407.1| ATP-dependent exoDNAse beta subunit [Vibrio vulnificus YJ016]
 gi|37199547|dbj|BAC95378.1| ATP-dependent exoDNAse beta subunit [Vibrio vulnificus YJ016]
          Length = 1221

 Score = 79.2 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 95/950 (10%), Positives = 230/950 (24%), Gaps = 110/950 (11%)

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
              +  W              +  +     A        +  + + I+        L A  
Sbjct: 284  ETVNRWAESETFDYHYPDKLAKFAQSELLAKTAKGTAPMHPLFEQIDAFLANPASLKAPL 343

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII-- 231
                     +     K   +  +           +    A +  +   L+      +   
Sbjct: 344  LAHAIEQCRVWLAKAKEQKQRLS-------FDDLLTRLSAAIDQDEAQLLASRIRTLYPV 396

Query: 232  --IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK------------ 277
              I     + P    + S +        +    D       +                  
Sbjct: 397  AMIDEFQDTDPLQYSIFSRIYLEHPQTGLFMIGDPKQAIYGFRGADIFTYIKARNQVSAH 456

Query: 278  --STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                    S+            +        ++      N S +   R   ++    P  
Sbjct: 457  YTLGTNWRSSAEMVAAVNQIFQQPDSPFIYDQDIPFLPVNASPKADQRIWNMAGQKQPAL 516

Query: 336  TSDMRNTDILENKIPNIQKCFSD-----VALIEADNEREEAISIAIALRMSLDENKKKSA 390
            T  ++  +         Q+  +D     +  I   +++ +A                  A
Sbjct: 517  TYWLQECEEKPVAKGEYQQVMADATASQIQRILTLSQQGQASF--QQGERQHPIQAGDIA 574

Query: 391  LITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            ++    +  R +K  L + GI  + +S    +  +  +  +  +L A+    D  A+   
Sbjct: 575  VLVRTGSEGRLIKQTLAKQGIASVYLSNRDSVFLSPVAQDVQRILQAVLTSEDDRALRAA 634

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
            +   L                        N     + + K      ++            
Sbjct: 635  LACELFALDAASLDKL---------NNDENAWEKALSEFKEYRKLWLSRGVMPMLRAVMA 685

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
             R   E           +   +      +   N    +  +  W   +++   N      
Sbjct: 686  KRHIAERLLTQQEGERTLTDLMHLAELLQQASNEIDSDHGLLRWFAQSISDAHNGIGGSD 745

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
             ++  L  E     +       I     ++ + +    +       E      +   T+ 
Sbjct: 746  EQIQRLESERNLVQIV-----TIHKSKGLEYDLVFLPFVFAHREASEAKFYDAQTDRTVL 800

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVMQSDLNLKTAEKYIGQAAHD 687
             +   ++ L   D   L      ++   T      F+      +         + ++A  
Sbjct: 801  DITASDAALQQADKERLAEDLRLIYVALTRAVYGCFIGAAPLRNGRSTKEPTGVHRSAMG 860

Query: 688  FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
            + + NG    I T         T +   +         + +  +            +L  
Sbjct: 861  YLVQNGQEGGIATLQQALAGQQTQSDSIVVTSPPTLPDEQYQPITTPALALSAQ--ELAT 918

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP-HFKKDPDRT 806
               +            +   ++   + ++ +  D  +        +  +       P   
Sbjct: 919  PIDRLWRITSYSGLVKQGSHQSDYDASLEVVGFDIDSSAEDPQAPVQEVEKSIFTFPRGA 978

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
              GT  H++  E+   +   +                 +      ID+ W  +  ++  +
Sbjct: 979  SAGTFLHSLFEEVEFTQAADSEQN---------RQVITELMEKNLIDLEWLPVLQQLVDT 1029

Query: 867  FL------EHEEKIQSSIEKIFVNIPAKMAIE----------------------SIGIH- 897
             L      +H    Q +  +  V +   + IE                       +G   
Sbjct: 1030 VLSTPLDGKHLYLNQKTPSQRLVEMEFLLPIEVLSAASLNQVIQRHDPLSARAGDLGFQT 1089

Query: 898  ----LTGFADRIDLLKSGFVDITDYKT-----------GDNPKKETAQKLIDPQLSLEAA 942
                L GF D +   + G   + D+K+           G+  +        D Q  + A 
Sbjct: 1090 VQGMLKGFIDLVFEHQ-GKYYVLDWKSNHLGDAVHFYHGEALQGAMVDHRYDLQYQIYAL 1148

Query: 943  ALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
            AL     S++           ++Y+ L+             K S D L+E
Sbjct: 1149 ALHRFLRSRLANYDYQHHFGGVYYLFLRGMDGESEHGIFSAKPSLDLLTE 1198


>gi|319934766|ref|ZP_08009211.1| hypothetical protein HMPREF9488_00042 [Coprobacillus sp. 29_1]
 gi|319810143|gb|EFW06505.1| hypothetical protein HMPREF9488_00042 [Coprobacillus sp. 29_1]
          Length = 895

 Score = 79.2 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 60/457 (13%), Positives = 142/457 (31%), Gaps = 45/457 (9%)

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKP 620
            +       + ++  +   + L   + + +E+         A E+ +  T        + 
Sbjct: 328 ALDCIPDSSISDIAHQLHQEELEKDYYEYLESLFDYFDIITAQEFKEFFTATYI-HNHQE 386

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV---MQSDLNLKTA 677
           K      + I    + +      +   GLNE ++P        L      +     + T 
Sbjct: 387 KSNTLDQIKICTIDKVKTAQPKHIFFLGLNETIFPALIKDTGLLLDEDIQLLRKFQITTP 446

Query: 678 EKYIGQA-AHD----FEMANGTRHLIYTRSLRENNIPTIA-SRWLQRLLVLGGTDFFDNL 731
                Q  AH       +      + ++   +  +  T+  S   + L  L        L
Sbjct: 447 LNTTEQLGAHHNDILKALLQPAISMTFSYCKQTLSGETLLQSSLYKELENLLTLHPAFEL 506

Query: 732 KKRGQCYLDWTRKLDYTTKQP------------HYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                     +  L    +                 +       +    T S S+I+   
Sbjct: 507 NYLPLDDYYLSGGLITEKELLNKNIQDYIHSHNQPVQLSRETVEKLYSPTLSVSQIETYN 566

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
             P+  + +  L +      +      + G+L H +++  I ++++  T  +++ + Q  
Sbjct: 567 KCPFQYFVQYGLGIYPTKESQ--LLPNELGSLVHYVLSINIDQQVDIGT-IVDNYILQ-- 621

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
           D + + +    HI+  +     K     L   ++     +    +   K+  +  G+H  
Sbjct: 622 DENLQTKISNSHINQYFIEQLKKDLEMTLTVLKRQLKISQFQLHDKEKKVQHDIQGMHFK 681

Query: 900 GFADRIDLLKSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDC 954
           GF DRID  ++ +V I DYK+      +        +    Q+ L    +       +  
Sbjct: 682 GFVDRIDQYQN-YVSIIDYKS----SAKDIDINLAIQGFHIQMLLYLKMVTE-----LYQ 731

Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
           +    + Y    +K  +    N  +    +E  ++  
Sbjct: 732 KDPGAVLYFN-TKKRILSVNQNMSEPVDENEFYKQYR 767


>gi|78065793|ref|YP_368562.1| exodeoxyribonuclease V, RecC subunit [Burkholderia sp. 383]
 gi|77966538|gb|ABB07918.1| Exodeoxyribonuclease V, RecC subunit [Burkholderia sp. 383]
          Length = 1112

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 79/883 (8%), Positives = 188/883 (21%), Gaps = 50/883 (5%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  ALL        R  P      A   + VP+    + L  +     G  + +   
Sbjct: 10  HETLADALLEDLAAFPARNGP-----WAQQQVIVPSAALRRRLELDIAARNGVCANVEFT 64

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             +      +   A +    ++          L      L  +             +   
Sbjct: 65  YLA------QWLWAQIGRVMDVPKRSPFAPDRLVWRCYRLFAQAPDGTPWLASPRLAAYL 118

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAADFLKIA 191
                A    LA  +A ++D   T   +W                       A D  +  
Sbjct: 119 SASDDAMRYELAHRVAAVLDHYLTYRPEWLSAWQAGESVLAGDGAPRGISDAARDDERWQ 178

Query: 192 SKYWTERLVEL-NASSPVGYQIALMRAEAEH---LMKGTKGPIIIAGSTGSIPATARLMS 247
           +  W   L EL ++ +P  ++  +     +            + +       P    L+ 
Sbjct: 179 AALWRALLAELSDSGTPPAHRFLVEARHLDAETIAHADWPESVSVFALPTMPPLHVALLR 238

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            ++   +  +            I       + +               LA+       + 
Sbjct: 239 ELSRWIDVRVYALNPCREFWFDIVTAAHADALDAAGRLDYQEVGHP-LLAEWGRQTQAQL 297

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
             +  L   +        V + +            ++              + +    + 
Sbjct: 298 HMLHELTESAASGDASRFVENPASTWLARVQNAILELQPEADVGDTPAERGIEVHVCHSL 357

Query: 368 REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI----------NIDISA 417
             +   +   L    D +                    L                  I+ 
Sbjct: 358 ARQLEVLHDRLLAWFDADASLQPSDVLVAVADLAAAGPLIDAVFGTAGAGGSRVPYRITG 417

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
             P      + +L   L    +      +   ++       +     +       L A  
Sbjct: 418 LPPSQANPVARVLLDWLALPERQVGAPELVEWLRVDAVAARYGIDAAALETVQTWLAAAG 477

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL---------VDHIL 528
             +    +    + V     T  +          + E    +   L          + + 
Sbjct: 478 ARRGLSPLASDDAAVPSPRHTFSDALARLFLGYAMPEGAAPVGAWLPIEAATGSEAELLG 537

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
           +                 + +   W++L    L             L    +   L ++ 
Sbjct: 538 RLARFTDDLDGFARRLAESHTPQGWSELFADTLARFFDSGAAYADALAGVRD--ALDAML 595

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
           + + E        A      +   +D             +        R L +  + L G
Sbjct: 596 AAMTEGAPDEALPAAVVRAGLAAALDD--PARGGVPWGGVTFSSLTSLRGLPYRVVCLLG 653

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
           +++GV P     + F    +   L  +           D  +A   R +I        + 
Sbjct: 654 MDDGVLPSLARADEFDLMAVLPKLGDRQRRDDERNLFLDLLLAARDRLMIAYTGRSIRDN 713

Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
             +    L   L+                     R          +      P  E    
Sbjct: 714 APLPPAALVDELLDHLALVTAGPDAPPDAVDAARRAFVVEHPLQPFAAAYFQPGSELVSY 773

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
               + +  L+    +    R L     P   +  +         +      +       
Sbjct: 774 DAERATLATLLAAEASHDGPRELPFFAQPLPAEPVEPVAF-----SEFERFWRHPARALL 828

Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
                ++     +                 L  ++    +E +
Sbjct: 829 RARLGIVLADAQAELLDTEPFALDFAGSDALAERVLPLLIESD 871


>gi|56751936|ref|YP_172637.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301]
 gi|56686895|dbj|BAD80117.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301]
          Length = 794

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/569 (9%), Positives = 137/569 (24%), Gaps = 86/569 (15%)

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPAT 242
           +    + + ++L   NA       +  ++   ++             +++     +    
Sbjct: 206 IGEVYRRYLDQLAANNALDFDDLLLIPVQLFRQNEQVLAYWHQRFRHVLVDEYQDTNRTQ 265

Query: 243 ARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
             L+  +          +  N   V    D       +             +        
Sbjct: 266 YDLIRLLTTNGAETRDFDPWNHRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD----- 320

Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                                    ++              +     NT+ ++  +   +
Sbjct: 321 --------------RLPDDDTRTMVKLEENYRSTENILQAANELIRNNTERIDKVLRPTR 366

Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTRF 409
                +A   AD+E  EA  +   +R    ++ +      A++       R  +  L R+
Sbjct: 367 GSGEAIACYRADDEMAEAEYVVQQIRQLEQQHPELNWGDFAILYRTNAQPRAFEDSLVRW 426

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            +   +  G+          + + L AI    D +++  +V  P                
Sbjct: 427 NVPYTVIGGLRFYDRREVKDILAYLRAIANPFDAVSLLRVVNVP---------------- 470

Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                              + +    I    +     +        D E    L     +
Sbjct: 471 ------------------KRGVGKTTIGRLVDAAQELNVPLWEILSDSETVQNLAGRSAK 512

Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEGKTLSSLF 588
            I        +       L  S+  +  +     +   +      +       + L +  
Sbjct: 513 GILEFANLVQHFQDQADELRPSELIRQLLEASGYIAELQRSGTGEDEDRRRNLEELVNAA 572

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            +  E               +    D +           + ++    S+ L F  + L G
Sbjct: 573 VQHEEENDDPSLIGFLGTASLASDADNKEANQ------QVSLMTLHASKGLEFPVVFLVG 626

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
           L +G++P   + +   +   +  L      +        F      R L           
Sbjct: 627 LEQGLFPSFRSLDDPRAVEEERRLCYVGITR---AQERLFLTHASARRLW-----GGGRE 678

Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
           P I+S +L  L            +++ Q 
Sbjct: 679 PAISSNFLSELPAELIVGHSPQTRRQTQA 707


>gi|260654704|ref|ZP_05860194.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1]
 gi|260630720|gb|EEX48914.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1]
          Length = 1181

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 89/852 (10%), Positives = 193/852 (22%), Gaps = 81/852 (9%)

Query: 175  EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIA 233
            +         A    +    W E     N  S     +   R  A           +++ 
Sbjct: 351  DDESQLRGSLAKLAALCWAVWEEHKKANNLISYSDMILKAKRVIAAAPEWSKRFRHVLVD 410

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
                +     +L+++++    GA +    D       +        +  S    +     
Sbjct: 411  EYQDTDVLQDQLVTSLSQQS-GAALFLVGDVKQSIYRFRHADPSLLDRRSEQARWDGKFI 469

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP--- 350
                       +      R   V     GR++      L          +  E       
Sbjct: 470  ALNVNFRSSPAVIDAINGRFSVVYEHGLGRNLTTPYMNLRAPERADGTREAAEAGPVGEL 529

Query: 351  ---NIQKCFSDVALIEAD-NEREEAISIAIALRMSLDE---------------NKKKSAL 391
                  +C  +V         +  A  +A  L    +                + K   +
Sbjct: 530  LAVAPAECTDEVPAEPQPIARQRLAKRLAERLAELKENGLTVRDRESGERRPIDWKDMTV 589

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +   R     ++    + G+ + ++  +          L++LL  +        +A+ + 
Sbjct: 590  LVPTRTQYAPLQTGFEQAGVPLRLAGNVDYYARYDIRDLSALLRFLTSG-SPFDLASFLC 648

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             PL+     +               R  + +    D  SL+        +       ++ 
Sbjct: 649  SPLSGVPLADAQ-------------RITQLTASSPDPLSLLAQEAPALAHELADLKGEAA 695

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                   +   L+   L  + P   +    +          +       L        + 
Sbjct: 696  F-FGASRVVSWLLRRDLSSVAPHKRWGVASDLRQALGQFEAFESAFGPSLLAESRFFDQA 754

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                   E      S  +    T    K      + +                  +    
Sbjct: 755  CRQKLRPEAESGFFSDCAVTATTVHSAKGLEFPLVAVFGLEAA-----------PSSRSF 803

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
            G  ES  L   T    G             P L  +          +++       +   
Sbjct: 804  GLDESIHLGAVTGKWPGNLTASLSPVPPDGPRLKTIHDLAEEEPEEDEWK---RLYYVAL 860

Query: 692  NGTRHLIYTRSLRENNIPTIASRW--LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
               R  +    L+          W  L++  +    +         +      R+   + 
Sbjct: 861  TRARDWLILAGLKTAKGDAKKKSWMALEKFCMPEAFEAASEASATEENLEAAPRERPSSA 920

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF---KKDPDRT 806
             +                 + S S        P    A               ++ P   
Sbjct: 921  ARVADGPVVRRAVHAPHLTSISASSFVLWNRCPACWRAVFRQGFQDRRENFSGEETPGGP 980

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HL----FH 861
              G L H  +                  ++ I+         P H+  +WR         
Sbjct: 981  RTGELLHWALALW---------DYTPQQLELILRPD-GPLVPPLHLRSLWREPRTKSWIR 1030

Query: 862  KISHSFLEHE----EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
            ++   F                 +    P ++      + LTG AD I         I D
Sbjct: 1031 QLIEGFTTLPSFKMACQAKLSGTLEREKPLRLDRPD-NLALTGIAD-ITWTDGACRFIRD 1088

Query: 918  YKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
            YKTG+             QL      L+  +  +     +A +       +        D
Sbjct: 1089 YKTGNFHAAAQEDA--VQQLRFYGTILRRTAPQRTAELDLAVVVLDPKGPREIPVTPLTD 1146

Query: 978  KKKYSADELSEK 989
            +++      + +
Sbjct: 1147 EQENDLFSAAAE 1158


>gi|329920255|ref|ZP_08277039.1| ATP-dependent helicase/deoxyribonuclease subunit B family protein
           [Lactobacillus iners SPIN 1401G]
 gi|328936300|gb|EGG32748.1| ATP-dependent helicase/deoxyribonuclease subunit B family protein
           [Lactobacillus iners SPIN 1401G]
          Length = 935

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 83/700 (11%), Positives = 188/700 (26%), Gaps = 108/700 (15%)

Query: 359 VALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL-ELTRFGINID 414
           V LI+AD+   E   +A  +   +       K   ++  + +          ++  I++ 
Sbjct: 80  VHLIKADSRYAEINFVAQTIYQQVVFNHYRYKDFLVLAPNLSEYETYLTPIFSQNNISMF 139

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALE 472
                 +       ++ ++ +          I T++K  L   ++   +       + LE
Sbjct: 140 NDLQKQMKFHPLVVLIENIADINDMGFKTQDIITILKTRLLIPEWYTDDIKFIADVDLLE 199

Query: 473 LVALRGNKNSYDI----MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
              L  N N         D     +  +              +   E+ +  +  +  + 
Sbjct: 200 NFVLAHNINHQLWKKSFYDFVDNNISHLDQINEKVEKLDKLRQFIIENIDNLITQLHKLT 259

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                + ++         N  +  W        ++  ++          E+    L+ L 
Sbjct: 260 NVQEAVTSFWDFLLKNQINKKLEKW--------RDTAINNGDLQLAQQPEQIWALLNKLL 311

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
              +      + N   + DI+                  + +      +  +F  + + G
Sbjct: 312 KDYVLIAE--EFNTENFFDILISGFSEANFSQIPSVLDAVTVSEIGMVQNNSFKQVFIIG 369

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY-----------IGQAAHDFEMANGTRH- 696
                 PK   K  FL+    ++LN    ++            + Q     ++ +     
Sbjct: 370 AVNNSLPKIQNKPGFLNIENINELNNSIDDEQQYIENNQEVNNLDQTYQFGDLLSLASDG 429

Query: 697 LIYTRSL-RENNIPTIASRWLQRLLV--LGGTDFFDNLKKRGQCYLDW------------ 741
           +  +  +   +N    AS + Q +            +L +  Q  L +            
Sbjct: 430 VYISYPIINVSNEKMEASIFYQDIKNTLNLTEYVQHDLPENQQQLLSFITTPQASLGYIV 489

Query: 742 --------------------TRKLDYTTKQ-------PHYKRPKPFPPLEAQPRTYSFSE 774
                                  L     Q       P    P     L       S S+
Sbjct: 490 YLKNKTNDDISNLLALTPSNQALLFDNVIQASSFKNKPVNLTPALAQELYGNNINISISQ 549

Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN-- 832
           ++    + Y  +    L L     F+ +      G  +H  +  L+K             
Sbjct: 550 LETFYANSYEYFLTYGLHLHKR--FENELTNIQSGNYYHETMDRLVKYLKQHKLDFAELT 607

Query: 833 ----HLMKQIIDSHFE-----KENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKI 881
                ++   I    +     +E L    +        + +   +   H+   Q+    +
Sbjct: 608 KEKISVILGNIQDELKTKGSYRELLGDPFNEFLFKCLDRTTKKVVNYWHQNMCQTKFSPL 667

Query: 882 FVNIPAKMA--IESIG------------IHLTGFADRIDLLK--SGFVD-ITDYKTGDNP 924
           +  +       I  +             I L G  DR+DLLK     +  + DYK+    
Sbjct: 668 YSELSFGNKEYIAGLSYQFIDKQQKTHHISLRGKIDRVDLLKDCDNEILQLIDYKSSAKK 727

Query: 925 -KKETAQKLIDPQLSLEAAALKAG-SFSQIDCRKVANLFY 962
                 +  I  Q+    + L+        +   +   FY
Sbjct: 728 FDFNLFKNGISMQMLSYLSVLQDNSHIFSTNPVNIFGAFY 767


>gi|239826206|ref|YP_002948830.1| recombination helicase AddA [Geobacillus sp. WCH70]
 gi|239806499|gb|ACS23564.1| recombination helicase AddA [Geobacillus sp. WCH70]
          Length = 1244

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 94/995 (9%), Positives = 255/995 (25%), Gaps = 141/995 (14%)

Query: 56   AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI---QRLLEL 112
            A + L +  +++       LP      +   +       L   L+     +    + L L
Sbjct: 236  AAKRLIARALQLAHLPGGPLPR----AENYRDDLQLIAHLEALLDRSWDELYEAMKSLSL 291

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA--DIIDIIETEEKKWEDLH 170
            +RL     ++    + +              +      +L     +  +   +   E + 
Sbjct: 292  SRLKSCRGDEYDPQLVEEAKSLRDQAKKKLESLRDNVFSLRPTTWLRHMREMKPVVETIV 351

Query: 171  ALKNEKYGMWWLLAAD-----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
             L  +++   +                 Y  + L   +++         + ++A    + 
Sbjct: 352  RL-VKQFTEMFQARKREKGIVDFSDLEHYCLQILRHPDSTDGQW-----LPSDAALDYRA 405

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANH-PNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                +++     +      ++  V     +   +    D       +             
Sbjct: 406  QFVEVLVDEYQDTNMVQEAILRLVTKGNEHTGNLFMVGDVKQSIYRFRLAEPMLFLSKYK 465

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
              T     Q  +   L      R ++          +    ++S++    +  +      
Sbjct: 466  RFTA-DGKQSGMKIDLSNNFRSRAEILHGT-----NFIFKQIMSETVGEMEYDEAAELKY 519

Query: 345  LENKIPNIQKCFSDVALIEADNEREE------------AISIAIALR------------- 379
                 P+ ++   ++ +I+ +++ +E            A   A  +              
Sbjct: 520  GAVDYPDNEQAVPELIIIDRNSKDDEETGEFDTNDLAAAQLEARMMAKKIKEIVSEPFHV 579

Query: 380  ------MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
                         +   ++      A ++  E    GI +              SI+ SL
Sbjct: 580  YDRKAKRMRRAMYRDIVILLRSMTAATQIMEEFRAQGIPVYADLSSGYFQATEISIMLSL 639

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            L  I      + +A++++ P+      E  L R                   +D K    
Sbjct: 640  LKVIDNPYQDIPLASVLRSPIVGLNENELALIRIHEKKGTFYEAMVSFLTKTVDDKEEAA 699

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
             +   +     + HW++   +      +  +    Q    +      K       ++ D 
Sbjct: 700  LQQKLRLFYEQLKHWRTMARQRSLADIIWQLYRDTQFYDFVGGLPGGKQRQANLRALYDR 759

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
             +   T          R +  L    +    +    +  +    +  ++ + ++     I
Sbjct: 760  ARQYETTSFRGLFRFLRFIERLQNRGDDLGAARSLGEQEDVVRIMTIHSSKGLEFPIVFI 819

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNF-------------------------------- 641
             G +           ++L         F                                
Sbjct: 820  AGLSRPFNTRDLYESYLLDKELGFAARFVDPKLRISYPTLPQIAIKQKKRLDFLAEEMRI 879

Query: 642  DTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDF--EMANG 693
              + L    E ++     K+       + S  M+ +  L    +   +   D+       
Sbjct: 880  LYVALTRAKEKLYLIAAVKDAEKEVAKWKSTAMEEEWLLPDDVRASARCYLDWIGRALIR 939

Query: 694  TRHLI----YTRSLRENNIPTIASRWLQRL-----------LVLGGTDFFDNLKKRGQCY 738
             R        +       I +  S W   +                 +      KRG+  
Sbjct: 940  HRDGRNFGDLSYV--CEKIASHPSIWHMEVIPASQLYDVDKEAEQMDEQIITALKRGERV 997

Query: 739  L---DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI---KQLINDPYAVYARRILK 792
                +W  ++D      +    +     +              +     P   ++   L 
Sbjct: 998  PNAGEWKEEVDRLLSWEYAYEKEMLVRAKQTVSELKRHREIFGENADRMPLHSFSTP-LF 1056

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
               +   +K     ++GT  H ++ ++     +   P     +++ I    + E L    
Sbjct: 1057 ERPMFMREKTLTPAEKGTAMHIVMQQV-----DLTAPITEETVREQIAKLVQMELL--TH 1109

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI-----------HLTGF 901
            +         +   F     K   + ++++  +P  +A+ +  +            + G 
Sbjct: 1110 EQAEAIDISSVVAFFDTEIGKRLRAADEVYREVPFSLALPAKEVYEDGVGEERKALVQGV 1169

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936
             D +   + G + + D+KT     +         Q
Sbjct: 1170 IDCLFADEKG-LVLIDFKTDTVTNRFAGGWHEAKQ 1203


>gi|239631845|ref|ZP_04674876.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239526310|gb|EEQ65311.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 751

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 74/624 (11%), Positives = 168/624 (26%), Gaps = 97/624 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVS 104
           ++     T +A +E+R    ++   +      + +   +       D+  L YN    ++
Sbjct: 56  NILAITFTNKAAREMRERVGKLVDAEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIA 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +    L L + I      L D   D     P              K++   I   + E  
Sbjct: 116 DPAEQLTLVKHI------LADFNLDPKRYDP--------------KSILGAISSAKNELV 155

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
             +       +    +  + A         + +RL    A       +  +    +    
Sbjct: 156 DPQ--TYANEQANSPFTKVVAQ----VYAEYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209

Query: 225 GT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I +     +  A  +L+  +A   +   V+   D       W     ++ 
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYQLVHMLAEGYHNLCVV--GDADQSIYGWRGANMQNI 267

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      +P+  +  L       +  +    +V      R                
Sbjct: 268 LDFKK-----DYPKAQVILLEQNYRSTKTILSAANDVIQNNQNRQAK------------- 309

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADR 396
                    +    +    +    A +E +EAI +   +   + +N +     A++    
Sbjct: 310 --------TLWTENREGDKITYYRAQSETDEAIFVIRRIEAEIADNHRKYGDFAILYRTN 361

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++    +  I   +  G             +    +    D M+   +V  P   
Sbjct: 362 AQSRAIEEAFVKSNIPYKMVGGHKFYDRKEIRDALAYFRLVVNPEDDMSFNRIVNEPKRG 421

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G        A                             A + + + +    +      
Sbjct: 422 IGNTSVEKLEA----------------------------FANEHDWSLLEAAANAELSPI 453

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
              A   +    + I  L T + + N T    +I + +    T      L+   ++ NL 
Sbjct: 454 AGKARGQLAKFGKMIQQLGTRRKDLNVTEMMQAILEDSGYLSTLRAAHNLEADTRIENLE 513

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                        +     S I      ++D +  L          E +  + ++    +
Sbjct: 514 ELLSVTQGFDSRYQPENEDSDI------FVDFLAELALLSDQDDVEEDAQEVTLMTLHAA 567

Query: 637 RLLNFDTLILGGLNEGVWPKNTAK 660
           + L F  + L G+ EG++P + A 
Sbjct: 568 KGLEFPVVFLVGMEEGLFPLSRAS 591


>gi|219848623|ref|YP_002463056.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
 gi|219542882|gb|ACL24620.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
          Length = 646

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 70/694 (10%), Positives = 176/694 (25%), Gaps = 115/694 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+R     + G +   L    +   +        +           
Sbjct: 52  SQILAVTFTNKAAREMRERLRGLLGSRIRGL-TSGTFHAICTRILRESIEGRLKGYTASF 110

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +I    E  +L       + +    +                  A  +  +I   ++   
Sbjct: 111 SIYAGDEQLQLAAEALAGVSETPPRMIE----------------ADEVLRLISRAKSRML 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE---- 220
               +     +           F+    + +   L + NA       +   R  +E    
Sbjct: 155 TPRLMARFATDPLD-------RFVAACYRRYQRALEQANALDFDDLILTAYRLLSEDHDL 207

Query: 221 -HLMKGTKGPIIIAGSTGSIPATARLMSTVAN--HPNGAIVLPGLDCHIPTAIWNTITEK 277
               +     +++     + P+   L+  +          +    D       +      
Sbjct: 208 LATYQQRWPHVLVDEYQDTDPSQHALIELLTRPTAHRPRSLFVVGDAMQSIYGFRNADHN 267

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
             N  + +   +          +  L       + + + +  +   S  +S   L    +
Sbjct: 268 IINRFTVDFPDAQ---------VIELTTNYRSRQPILDAAYAIIRHSRSVSPMELRAAAT 318

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITAD 395
                                V + EA + REEA  +A ++     + +  ++ A++   
Sbjct: 319 V---------------AAERSVLISEAKDSREEAEQVARSIAELQRQGRRLREMAVLYRT 363

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
           R+++R ++  L    +   +   +            + L  I    D +++  +   P  
Sbjct: 364 RHMSRPLEQALRHARLPYVVRGSVSFFDRAVVRDAIAYLRCIANPADNLSLTRIANVPAR 423

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G        A                      +  +       +   +P    R  E 
Sbjct: 424 GLGGQALATIAAFA-------------------SAQSIPLSEALGHAPVIPRLSPRAVEG 464

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            + L  LL          +       +    +  ++   +                    
Sbjct: 465 ARRLFALLQRWRRLATGTMPPDHLLADVLEQSGYMAALAERFDA---------------- 508

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              EE     +   +++           E    +  +          ++   + +L    
Sbjct: 509 ---EELAEARAHLQELLRAAEEHT----ELSAFLQEIALMTNADDDDDERDRVQLLTIHA 561

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYIGQAAHDFEMANGT 694
           ++ L +  + + GL EG                +  L   +A E+        F  A   
Sbjct: 562 AKGLEWPFVFVVGLEEGTL------------PHERSLGDPSALEEERRLCYVAFTRA--A 607

Query: 695 RHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDF 727
             L  +  + R        SR+L+ +L  G    
Sbjct: 608 ERLYLSWTASRNRGQRLKPSRFLEEVLAFGRERA 641


>gi|312872903|ref|ZP_07732963.1| putative ATP-dependent nuclease subunit B [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091425|gb|EFQ49809.1| putative ATP-dependent nuclease subunit B [Lactobacillus iners LEAF
           2062A-h1]
          Length = 1157

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 100/892 (11%), Positives = 235/892 (26%), Gaps = 137/892 (15%)

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
           DL+++ +E            L+I    + + L +    +       +++   +  +    
Sbjct: 138 DLNSISHEAVTEETSRKLHDLQIIYDEFIQMLGDH--FTTKDGIQLILKTVLDKKLSIDN 195

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
                 G +    +   ++  +A   + ++                              
Sbjct: 196 MNFFFCGFSYFSLSELNIVKIIAKKAHLSVFAFQTKDAQIND-------------KVMEG 242

Query: 288 YSTHP-QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
              +  Q ++AKL++F +             N        ++  +               
Sbjct: 243 DYDYIVQSTIAKLINFFNANSLKFSTKEYGYNINLNNKEKLNAIWT-------------G 289

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVK 403
           N         + V LI+AD+   E   +A  +   +       K   ++  + +      
Sbjct: 290 NIPQQGLDLTNYVHLIKADSRYAEINFVAQTIYQQVVFNHYRYKDFLVLAPNLSEYETYL 349

Query: 404 L-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFP 460
               ++  I++       +       ++ ++ +          I T++K  L   ++   
Sbjct: 350 TPIFSQNNISMFNDLQKQMKFHPLVVMIENIADINDMGFKTQDIITILKTRLLIPEWYTD 409

Query: 461 EKYLSRAKNALELVALRGNKNSYDI----MDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
           +       + LE   L  N N         D     +  +              +   E+
Sbjct: 410 DIKFIADVDLLENFVLAHNINHQLWKKSFYDFVDNNISHLDQINEKVEKLDKLRQFIIEN 469

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            +  +  +  +      +  +         N  +  W        +N  ++         
Sbjct: 470 IDNLITQLHKLTNVQEAVTLFWNFLLKNKINKKLEKW--------RNTAINNGDLQLAQQ 521

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            E+    L+ L    +      + N   + DI+                  + +      
Sbjct: 522 PEQIWALLNKLLKDYVLIAE--EFNTENFFDILISGFSEANFSQIPSVLDAVTVSEIGMV 579

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY-----------IGQAA 685
           +  +F  + + G      PK   K  FL+    ++LN   A++            + Q  
Sbjct: 580 QNNSFKQVFIIGAVNNSLPKIQNKPGFLNIENINELNNSIADEQQYIENNQEVNNLDQTY 639

Query: 686 HDFEMANGTRH-LIYTRSL-RENNIPTIASRWLQRLLV--LGGTDFFDNLKKRGQCYLDW 741
              ++ +     +  +  +   +N    AS + Q +            +L +  Q  L +
Sbjct: 640 QFGDVLSLASDGVYISYPIINVSNEKMEASIFYQDIKNTLNLTEYVQHDLPENQQQLLSF 699

Query: 742 --------------------------------TRKLDYTTKQ-------PHYKRPKPFPP 762
                                              L     Q       P    P     
Sbjct: 700 ITTPQASLGYIVYLKNKTNDDISNLLALTPSNQALLFDNVIQASSFKNKPVNLTPALAQE 759

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
           L       S S+++    + Y  +    L L     F+ +      G  +H  +  L+K 
Sbjct: 760 LYGNNINISISQLETFYANSYEYFLTYGLHLHKR--FENELTNIQSGNYYHETMDRLVKY 817

Query: 823 RINKNTPEIN------HLMKQIIDSHFE-----KENLPPHIDIIWRHLFHKISHSFLE-- 869
                            ++   I    +     +E L    +        + +   +   
Sbjct: 818 LKQHKLDFAELTKDKISVILANIQDELKTKGSYRELLGDPFNEFLFKCLDRTTKKVVNYW 877

Query: 870 HEEKIQSSIEKIFVNIPAKMA--IESIG------------IHLTGFADRIDLLK--SGFV 913
           H+   Q+    ++  +       I  +             I L G  DR+DLLK     +
Sbjct: 878 HQNMFQTKFCPLYSELSFGNKEYIAGLSYQFIDKQQKTHHISLRGKIDRVDLLKDCDNEI 937

Query: 914 D-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG-SFSQIDCRKVANLFY 962
             + DYK+          +  I  Q+    + L+        +   +   FY
Sbjct: 938 LQLIDYKSSAKKFDFNLFKNGISMQMLSYLSVLQDNSHIFSTNPVNIFGAFY 989


>gi|215426220|ref|ZP_03424139.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T92]
 gi|289749473|ref|ZP_06508851.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T92]
 gi|289690060|gb|EFD57489.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T92]
          Length = 632

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 76/633 (12%), Positives = 167/633 (26%), Gaps = 88/633 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R   + + G+K+  +  + +              L   LN   S
Sbjct: 68  GQILAITFTNKAAAEMRERVVGLVGEKARYM-WVSTFHSTCVRILRNQAALIEGLNSNFS 126

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+ +    L   IK   P                   LA+ I  ++ E  
Sbjct: 127 IYDADDS-RRLLQMVGRDLGLDIKRYSPRL-----------------LANAISNLKNELI 168

Query: 165 KW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----- 218
              + L  L  +         A  +      +  RL   NA          +        
Sbjct: 169 DPHQALAGLTEDSDD-----LARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQ 223

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH------PNGAIVLPGLDCHIPTAIWN 272
                +     +++     +  A   L+  +         P G + +   D       + 
Sbjct: 224 IAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCV-VGDADQSIYAFR 282

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             T ++            +P      L       +  +    +V     GR         
Sbjct: 283 GATIRNIEDFE-----RDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRR-------- 329

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKS 389
                        E ++         +    ADNE +EA  +A    AL    +      
Sbjct: 330 -------------EKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDV 376

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A+     N +R ++  L R GI   +  G+          + + L  +    D +++  +
Sbjct: 377 AVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRI 436

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
           +  P    G   +                   +        +   +      NT      
Sbjct: 437 LNTPRRGIGDRAEACVAVYAEN----------TGVGFGDALVAAAQGKVPMLNTRAEKAI 486

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
           +   E   EL   L D + + +  ++     +     +    +  +L    L  +    H
Sbjct: 487 AGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARL--DNLNELVSVAH 544

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
               +                +      +    +    +    +  +  +     +  + 
Sbjct: 545 EFSTDRENAAA----------LGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVT 594

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
           ++    ++ L F  + + G  +G++P   A + 
Sbjct: 595 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDN 627


>gi|120611309|ref|YP_970987.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
 gi|120589773|gb|ABM33213.1| DNA helicase/exodeoxyribonuclease V, subunit A [Acidovorax citrulli
            AAC00-1]
          Length = 1168

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 63/785 (8%), Positives = 176/785 (22%), Gaps = 72/785 (9%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPII 231
                 A   +     +     +         +   +            +  +      ++
Sbjct: 344  HQQRMARLTRALVAAFGALKRDRGWVDMNDVERTALVMLSDPVLSGWVQERLDARVRHLL 403

Query: 232  IAGSTGSIPATARLMSTVANHPNGA-------IVLPGLDCHIPTAIWNTITE-------- 276
            I     + P   + +        G         V    D       +             
Sbjct: 404  IDEFQDTNPLQWQALHAWLAGYVGTGGGQHPPSVFIVGDPKQSIYRFRRAEPQVFRAAQA 463

Query: 277  KSTNITSSNTTYSTHPQY----SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
                    +     H +      +A +   +   +      G   +    R   +     
Sbjct: 464  FVRQGLGGDLLACDHTRRNAPEVIAAVNAVMGAAQAQGDYAGFRDHTTESRDAGVLLRLP 523

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE----------AISIAIALRMSL 382
            P + +   + +                +L++  +E EE          A  +A  +  + 
Sbjct: 524  PIEDTADEDENGDGAPDARPDPLAWRDSLVQPRHEAEETLRMRECQQAARWVADRI--AA 581

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                ++  ++   R+    ++  L    +       + L        + +LL+ +     
Sbjct: 582  GVPARQIMVLARKRDRLSALQDALRDLHLPCVQPEKVELCEAPEVQDVVALLDVLVSPGH 641

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             +++A  ++ PL                                    L+ DR       
Sbjct: 642  DLSLARALRSPLFGVDDALLVRVAVARREAERGAARGPQEGGAPGWMELLADRALLDAEM 701

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
              + H         ++         +     ++      +       +    +  ++   
Sbjct: 702  PGLSHDLRLYRHWVEQWPPHDALDAIYRHRDVLARYAAASPAPLRAGVLANLRALLSAAL 761

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                  +          +     +      +    +  +  + ++    L+     + + 
Sbjct: 762  QQDGGRYLTPYAFVRALKRPGQRAPGRVDADAVRLLTIHGAKGLEADAVLLLDTDGRAQK 821

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
             ++  + +                G L         A            L  + AE+   
Sbjct: 822  AETMGVLV-------------DWPGELPAPRRFVFLASEASPPPSAADALAAEQAERQRE 868

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
            +    +      RH +    +R     +    W  R+  L      D     G       
Sbjct: 869  EINTLYVAMTRARHCLALSCVR--ASQSAPGSWWNRVAPLAADVPQDLSGPMGGAEDGLG 926

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
              +D    +    +     P+   P   + +  +              +           
Sbjct: 927  AAVDAQLPELPGWQDAVPLPMGLPPVAEAGAGAQA----------EAAVAGLPRERRAPS 976

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
               + +G   H ++ +                      +  ++      +          
Sbjct: 977  TPVSRQGEAMHQLLEQ--AGLAGTLPGGAAGGSAGWPRARLQQLARDFELPAELAEHAAV 1034

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL---LKSGFVDITDYK 919
            ++   L+ E     S  +I + +  +  I   G  L    DR+            + DYK
Sbjct: 1035 MAARILQGEGAWAWSSAEIELAMD-EAPIVHRGQTL--RIDRLVRRSTDGGAEWWVLDYK 1091

Query: 920  TGDNP 924
            +  NP
Sbjct: 1092 SAANP 1096


>gi|189500495|ref|YP_001959965.1| hypothetical protein Cphamn1_1561 [Chlorobium phaeobacteroides BS1]
 gi|189495936|gb|ACE04484.1| conserved hypothetical protein [Chlorobium phaeobacteroides BS1]
          Length = 876

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/456 (9%), Positives = 129/456 (28%), Gaps = 28/456 (6%)

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKN-STCGNLSISDWTKLTVTCLQNVCL-- 566
           ++     ++ +   VD   + I  L  +    + +    + +++         +      
Sbjct: 327 AQWQAALRQFSQQAVDTAPEAIDELKRWLEGSHVAYDQPMPLAELIACAGMVKEFYSRKK 386

Query: 567 -DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
            ++ +K     F    + +S     + +  S  + +   +            ++   ++ 
Sbjct: 387 DEDEQKEFRSLFSGAYEQVSVFLGAVEDLFSQGEKSICSYQIEQLLAFAACGIRHLFQRE 446

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL--KTAEKYIGQ 683
           +      +    +    + ++         +  A      R+      +   + EK +  
Sbjct: 447 AGSVPDTSHPGAVCENSSHVIWWWAVSPAMEQAAPWSAAERLFLKGEGVLFPSQEKVLAW 506

Query: 684 AAHDFEM-ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
            A D+       R    +  L              ++  L  +     +++         
Sbjct: 507 QASDWLRPLLAARE---SCMLVLPPEGDERHPLWLKIASLVPSIPVLQIEESLSVPGGIN 563

Query: 743 RKLDYTTKQPHYKRPK-PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
             L      P  +        +       S + ++ LI  P + +   + ++      + 
Sbjct: 564 SSLIPGHDLPGKRPFWKIAKGIPLPDSPLSPTSLEMLIAAPASWFLNHVAQVRPSERLEL 623

Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI--------- 852
           +      G+L H +I  L+ +  + +       +    D+ F++                
Sbjct: 624 NDGVRLYGSLAHRLIQTLVDRLRSTSGEMPV--LNAWFDAVFDELIQSEGAVLMMPGRGA 681

Query: 853 -DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
                R          L      +     ++     + +       + G AD +   + G
Sbjct: 682 ELENLRQRLRFAVSRLL--PVLREQGSSTMYAEHRLEGSFAGG--RMRGRADLLLFSRGG 737

Query: 912 FVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKA 946
              + D K G    ++++ ++    QL   AA ++ 
Sbjct: 738 EASVIDMKWGGGELRRKSLERGTHVQLLAYAAMVEQ 773


>gi|188585100|ref|YP_001916645.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349787|gb|ACB84057.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 726

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 73/558 (13%), Positives = 151/558 (27%), Gaps = 92/558 (16%)

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-----GPIIIAGSTGSIPATA 243
               + + +RL + NA       +  +R   ++  +          I++     + PA  
Sbjct: 163 DEVFEAYQKRLKKENALDFDDLLLLTLRLFEQYPDRLQYYQNKFQYILVDEFQDTNPAQN 222

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
           RL+S ++  P    V    D      ++     K+           T+P   + KL    
Sbjct: 223 RLISLLS--PPQDNVFVVGDDDQSIYLFRGADVKNILEFEK-----TYPNAQVYKLEKNY 275

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
              +  ++    V      R             S    TD  E            +   E
Sbjct: 276 RSSKTILEAANQVVTNNPSR------------KSKELWTDNDEGYP---------LQYYE 314

Query: 364 ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
           AD+ER+EA  IA  +R +        A++      +R ++    + GI+ ++  G     
Sbjct: 315 ADDERDEAYFIAEEIR-ANRYQLPLIAVLYRTNAQSRVLEDIFRKMGISYEVVGGTGFYD 373

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                 + + L  +        +  ++  P    G       +       + L       
Sbjct: 374 RKEVKDIMAYLMVVQCPQSDSQLERIINEPKRGIGKTSVDKLKDYANRNNITLFDALLEV 433

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
           D  D+     + +    +                     L++ + +    L   ++    
Sbjct: 434 DYTDISKRGKNSVKKFTDMIGNFRKMREYLT-----VRELIEEVAEKSGYLEALRSQN-- 486

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                        T      +            FE EG      F               
Sbjct: 487 -------------TKEAETRMENVREIYSMAKEFEAEGGETLQEF--------------- 518

Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
               +    + G+    + E+ + + ++    ++ L F  + L GL EGV+P     +  
Sbjct: 519 ----LTHSTLMGDIDTWEDEEQAQVVMMTLHSAKGLEFPGVFLTGLEEGVFPHIRTYDSE 574

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLREN----NIPTIASRWLQR 718
            S   +  L               +        +   T +              SR++  
Sbjct: 575 ASMEEERRLC--------------YVGITRAEQVLYLTWARERTLNGMTRMLQPSRFVSE 620

Query: 719 LLVLGGTDFFDNLKKRGQ 736
           +           L  +GQ
Sbjct: 621 IGEDLKDTQHQTLSGQGQ 638


>gi|145589486|ref|YP_001156083.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. asymbioticus
            QLW-P1DMWA-1]
 gi|145047892|gb|ABP34519.1| DNA helicase/exodeoxyribonuclease V, subunit A [Polynucleobacter
            necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1185

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 90/897 (10%), Positives = 217/897 (24%), Gaps = 132/897 (14%)

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
            +  L       +A  L+  +A+ I I ++    +E             W    D L I  
Sbjct: 316  DKALGALQKYLDAEGLSDRVAEHIAIKQSWGHSFEAYL---------LWQAEQDVLAINQ 366

Query: 193  KYW-------------TERLVELNASS-----PVGYQIALMRAEAEHLMKGTKGPIIIAG 234
             ++              E +   +              A   A  +  +      I+I  
Sbjct: 367  AWFALNQSMMAHASAKKENMRVRDFDDLEIGVSTLMADAANAAYLQARLDAKYKQILIDE 426

Query: 235  STGSIPATARLMST-VANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
               + P   +++   +A +  G     V    D       +     +             
Sbjct: 427  FQDTNPLQWQILRAWLAGYSAGDDKPKVFIVGDPKQSIYRFRRADPRLFESAKQFLHEEL 486

Query: 291  HPQY-------SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
               Y         A  ++    +    +++          ++  S     P  +     +
Sbjct: 487  GAVYIEQDKTRRNAPEINQAVNRIFTDEQIPPEYPYSKQETLWTSPVLDRPGDAYAEQGE 546

Query: 344  ILENKIPNIQKCFSDVALIEADN--------------EREEAISIAIALRM--------- 380
            +    +    +   +V    A +                 E  ++   +           
Sbjct: 547  VFLLPLIPYAEKLEEVREGSAFDKAIADPGQTNAAIQRYREGQALGRLINHLLKTRKVPD 606

Query: 381  -------SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
                             L+   R      +  L   G+  + S    L  TL    L +L
Sbjct: 607  QADGKTVWRAARASDFLLLVKRRQFLTEYERALREAGLAYESSRLGGLLNTLEVDDLIAL 666

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            L  +      + +A +++ P+  F   +              +  ++       L+    
Sbjct: 667  LTVLVTPRHDLPLAQVLRSPIFNFTEKQMQKLAVA-------MNADQYRSWWDALQDSQD 719

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
             ++ T        + +      ++     L+D I Q     + Y            +++ 
Sbjct: 720  AQLQTAAR-----YLKHWHLLGERLPVHDLLDRIYQEGDVRIKYAAICQEIDRPQVLANL 774

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                   L            + + +E          +  + G          ++     +
Sbjct: 775  DAFLEVALDQ--NGGQYPSLSRFIQEINAKRRGDDDETPDEGDVDATGDENLVE-----L 827

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--- 670
            +GE    + ++   + ++    ++ L    +IL   N      + +         +    
Sbjct: 828  NGENDMSEEDQQQRVRMMTIHGAKGLESPFVILLDANNTDANVDYSGVLMDWAPHEQSPS 887

Query: 671  -------------DLNLKTAEKYIGQAA---HDFEMANGTRH-LIYTR----SLRENNIP 709
                          L L  AEK IG+       +      R  L  +       + N   
Sbjct: 888  HLSLFTSKTLTSPRLELIEAEKSIGENENWNLLYVAMTRARQGLWISGDAQKPTKNNPDG 947

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
               S W  +    G       +   G  + +          +   +          Q   
Sbjct: 948  LDKSSWYGKASNAGIPIAVVPV---GMEHKEPAHLTKDGAHESAIEDFVLNWLPAIQNHD 1004

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
               S+I+             +     +     +    + G  FH ++  +  +       
Sbjct: 1005 QLLSDIE-----GGQTLEVFVGGDKQVDEPDPEI--LEEGNHFHQLLEMMTAQTSAPLMQ 1057

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
             +            +   +              +  +    +     +  + +      +
Sbjct: 1058 AMPSK-----QEIVDWLGIHEDHAEQLIKRVTAVLETPALKKYLTDGAWVQAWNE----L 1108

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             I S     +   DR+       + I DYK    P+     +    QL+     L+ 
Sbjct: 1109 DIASQDGK-SYRMDRLVEF-DTHLAIIDYKLTIPPEGSEQYEKYCKQLANYQKVLEH 1163


>gi|240142707|ref|YP_002967220.1| putative helicase (ATP-dependent exodeoxyribonuclease, subunit A)
            [Methylobacterium extorquens AM1]
 gi|240012654|gb|ACS43879.1| putative helicase (ATP-dependent exodeoxyribonuclease, subunit A)
            [Methylobacterium extorquens AM1]
          Length = 1116

 Score = 78.8 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 83/789 (10%), Positives = 209/789 (26%), Gaps = 53/789 (6%)

Query: 160  ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
                  ++DL A           +     +       +   + +        +      A
Sbjct: 354  AGALLDFDDLIASAATLLRDHEEVRQALGRRYRHVLVDEFQDTDPLQAEILWLLCGELPA 413

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
            +         ++  G+   +    + +           V           I     E   
Sbjct: 414  DAAGAAWTDRVLRPGALFLVGDPKQAIYRFRGADVSTYVQARDC------IRAKSPEDVI 467

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +++++  +  +   +   +  + L ++ +      +  +E + R   ++   +P    D 
Sbjct: 468  SVSTNFRSCRSILAFVDNRFREVLQVEGQPGYVALDPFHEDHDRGPCVAALDIPAAEGDG 527

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
            + +                  LI           +  +   +        AL+    +  
Sbjct: 528  KRSADALRDAEAEAVADLCARLIG-------QRLVTCSRNGTRILQAGDIALLAPSGSDL 580

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
             R +  L   GI +   AG           L +L   +    D +A+  L++ P      
Sbjct: 581  WRYEEALEARGIPVSTQAGKGFFRRQEIQDLIALTRVLADPRDTLALGALLRGPAVG--L 638

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
             ++ L    + L     R +      + L  + V   +A +         +  L     +
Sbjct: 639  TDEELLDLVDGLPRDPERPDARQKLRLGLDVAHVAHPVAREVIGRLQVLARRALGTTPHD 698

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            +    VD I   + P+V  + + ++     ++  + +++            R +   W  
Sbjct: 699  ILSQAVDAIR--LRPVVRQRHDGHAERALANVDLFLEMSRPYAVRGLRAFARAMKAAWDG 756

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
               +T+           S    +A + ++    +    + + K    + +          
Sbjct: 757  R-TRTVEGRPDAQEAAVSLFTMHASKGLEWPVVIPINTSTRTKAVSGALV---------- 805

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
                       +                  +  L+ +  E    +    +  A   R  +
Sbjct: 806  -----------DRPANCLYCPVFGVRPAGYEDALDRERREVVNERVRLWYVAATRARETL 854

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
                 R        S      L L      D  +   +  +  T  L+  T++       
Sbjct: 855  VL--PRFPEPSDRTSWASVIALGLDAVPAIDLGRLPLRPMVAVTETLNEQTREVFTSEAA 912

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP-DRTDRGTLFHNIIT 817
                             +     P    A               P    +RGT+ H ++ 
Sbjct: 913  TVARHRRLTWIVPS---RDDAPVPGFEDAGSEPLPVPTETVSAPPQGGRERGTVIHKLLE 969

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            E++   +++   +      + +  H            +            L    ++   
Sbjct: 970  EILTGELDER--DGLEARARFLAGHLGPCEADGRPAALDPADIAACVARALALP-QVAGI 1026

Query: 878  IEKIFVNIPAKM--AIESIGIHLTGFADRIDLLKSGFV-DITDYKTGDNPKKETAQKLID 934
             E++   +P     A++       G AD +   + G    + D+K+   P  + A     
Sbjct: 1027 RERLRAEVPVYAYEALDEEERATAGVADALACDERGQPDVVVDWKSDVAP-GKDALLGYR 1085

Query: 935  PQLSLEAAA 943
             Q++   AA
Sbjct: 1086 AQVARYLAA 1094


>gi|225021452|ref|ZP_03710644.1| hypothetical protein CORMATOL_01472 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945834|gb|EEG27043.1| hypothetical protein CORMATOL_01472 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 248

 Score = 78.8 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 22/220 (10%)

Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-KRINKNTPEINHLMKQII 839
            P     R I KL              RGTL H  + ++   +R  +  P +   ++   
Sbjct: 3   CPLLYRFRAIDKLPEPKTV-----AQVRGTLVHACLEDMHLWERPERTYPAVVKRLRPNW 57

Query: 840 DSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
                +     E +P      +      +   +     +     + +         +   
Sbjct: 58  ADMCGEDPSLLELVPEGEVYEFLVGCRSLLKGY--FLMENPQGFDALACEKFVDAVLP-N 114

Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-QLSLEAAALKAGSFSQID 953
           G+ + GF DR+D+  +G V + DYKTG  P            Q+   A          + 
Sbjct: 115 GVPVRGFIDRVDVAPTGEVRVVDYKTGKKPLPR--YSGQAKFQMRFYALVWWRT--QGVI 170

Query: 954 CRKVANLFYIRLKQKFKIDCITNDKK--KYSADELSEKSL 991
             ++  L Y+++     +     + +  +    +L  K L
Sbjct: 171 PHQL-RLMYLKVADSLYLAPSREELEFFERDLGDLWGKIL 209


>gi|241662730|ref|YP_002981090.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240864757|gb|ACS62418.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 1173

 Score = 78.8 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 69/775 (8%), Positives = 180/775 (23%), Gaps = 66/775 (8%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTG 237
               D L    + +  +   ++ +        LM      A  +  +      +++     
Sbjct: 363  ALGDALIDRYQAYKRQARAMDFTDLEWEAARLMQQDDTAAYLQVRLDARYKHLLLDEFQD 422

Query: 238  SIPATARLMSTVANHPNGA----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---- 289
            + P   R++        G      V    D       +     +  +             
Sbjct: 423  TNPMQWRILQGWLAGYAGTGTQPSVFLVGDPKQSIYRFRRADARLFDAAREMLVAEFNAT 482

Query: 290  ----THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                   + +   +L++++      +  G+        + V + +        +  ++  
Sbjct: 483  VLRTNRTRRNAPAVLEWVNAVFLQARARGDYPIYAEQSTAVDAPTGQALLLPLVPVSEAE 542

Query: 346  ENKIPNIQKCFSDVALIEADNER-EEAISIAIALRMSLDENK------------KKSALI 392
            +      +   ++      D++R  E   +A  LR      +                L+
Sbjct: 543  QADEAAPRDTLTEPREEAGDSQRYAEGRQVAACLRALHANERIREGGVERAVRWSDFQLL 602

Query: 393  TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
               +      +  L   G+         L  TL +  L +LL+ +      +++A +++ 
Sbjct: 603  VRRKRYLADYERALRDAGVPYLSPRRGGLLATLEALDLCALLDFLMTPQADLSLAHVLRS 662

Query: 453  PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
            P+                       G         L +L      +             L
Sbjct: 663  PVFAASDEHLIALA-------QFGEGAAALTWWERLTALAGHADGSDTLRYAHRMLSRWL 715

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR-- 570
            +         L+D+I+        Y     +   +  +++        L           
Sbjct: 716  AVAPTLPVHDLLDYIVYTGELKRRYAERAPAAIRDQVLANLDAFLKLALDLDGGRYPSLP 775

Query: 571  --KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                      +  +  S       +T +    +A    + +  +        K  ++  +
Sbjct: 776  KFMAELRAIRQGDEDESPDEGMQGDTEAPDTIDAEVASEGLDAVQILTVHASKGLEAPFV 835

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA--- 685
             +L +  S        IL     G            +        L   ++         
Sbjct: 836  VLLDSHHSDARVDTAGILIDWPPGAQAPAHFSAFGKTSERGLARELLFKQENALAERENW 895

Query: 686  -HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
               +      R  +    +      T A    +                           
Sbjct: 896  NLLYVAMTRARQALIVSGVANKRDATAAQSLDEGDAPEVDGTASWYTLLASAGVASPAAM 955

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
            LD                        + +                    +       D  
Sbjct: 956  LDDVADSVSSAAGHEVVSYHDFRAPLTVTVRVG----------AAGAPAEGAADIVFDQG 1005

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
               +G L H ++  L ++ + K  P+   + +    +   + +     D        ++ 
Sbjct: 1006 AVAQGELLHAVLERLTRRGLPKQAPDAETIARWFGATGVTQADATRAADA-----VRRML 1060

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
             +         +  +     I       ++        DR+    +  V + DYK
Sbjct: 1061 SAEALVHVFDPARFDAAHNEIELFGRDGAL-----LRIDRLIERGN-EVLVVDYK 1109


>gi|58584193|ref|YP_203209.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625962|ref|YP_453334.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58428787|gb|AAW77824.1| DNA helicase II [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369902|dbj|BAE71060.1| DNA helicase II [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 728

 Score = 78.8 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 63/705 (8%), Positives = 161/705 (22%), Gaps = 110/705 (15%)

Query: 50  YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105
              T +A  E+R         G +      I +   +           +        + +
Sbjct: 60  VTFTNKAAGEMRHRTDLQLRNGSRGMW---IGTFHGLAHRLLRLHWQDARLPEGFQVMDS 116

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +L  + R++                                       I+  + E ++
Sbjct: 117 DDQLRLVKRVVQALELDESKYPPKQLSWW---------------------INEQKDEGRR 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            + +      +    W             + +R             +       +     
Sbjct: 156 PQHIQ----PEPNDDWTEVRRQ---VYAAYQDRCDRSGLLDFAELLLRAHELLRDTPALL 208

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +       +  +A       V    D       W     ++  
Sbjct: 209 AHYRARFREILVDEFQDTNAIQYAFVRVLAGESGN--VFVVGDDDQAIYGWRGAKVENVQ 266

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                            G  +  +       +      +     
Sbjct: 267 RFLKDFP--------------------------GAQTVRLEQNYRSSANILGAANAVIAH 300

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398
           N D +  ++         + L  A NE +EA  +    R  + +     + A++      
Sbjct: 301 NPDRIGKQLWTDSGDGDPIDLYAAYNEVDEARYMVERARQWVRDGGSYGELAVLYRSNAQ 360

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++  L    +   +  G+            + L  +   +D  A    V  P     
Sbjct: 361 SRALEEALISAQLPYRVYGGMRFFERAEIKDALAYLRLLTNRSDDAAFERAVNTP----- 415

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        +    LD +        +  W++ +    + 
Sbjct: 416 --------------------------TRGIGDRTLDEVRRLARANALSLWEAAMLCTQQN 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                  + L     LV     +          D   +     ++   +    L +    
Sbjct: 450 TLAARARNALATFLSLVGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGLDSESRT 509

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E    L S+ S+             E +  +                  + ++    ++ 
Sbjct: 510 ENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGMQLMTLHSAKG 569

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L F  + L GL +G++P   +         +  L      +   +    +          
Sbjct: 570 LEFPIVFLVGLEDGLFPSARSLEERGRLEEERRLAYVGITRARQKLVLCYAE-------- 621

Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +R +   +   + SR+L+ +      +    ++      L   R
Sbjct: 622 -SRRIHGQDNYNVPSRFLREIPRDLLHEVRPKVQVSRTASLGAAR 665


>gi|227504336|ref|ZP_03934385.1| RecB family exonuclease [Corynebacterium striatum ATCC 6940]
 gi|227198984|gb|EEI79032.1| RecB family exonuclease [Corynebacterium striatum ATCC 6940]
          Length = 251

 Score = 78.8 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 68/216 (31%), Gaps = 22/216 (10%)

Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-PEINHLMKQIIDSHF 843
              R I KL              +GTL H ++    K    +   P    ++K   +   
Sbjct: 3   YRFRAIDKLPEPKTL-----AQVKGTLVHAVLENTHKLPREQRDYPTAVKMIKPEWEKMV 57

Query: 844 E-----KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                 KE +P    + +      +   + + E       +     +     +   G+ +
Sbjct: 58  AADSELKELVPDDATLDFFVSARDLVKGYFQMEN--PQGFDAQECEMYVDTVLP-NGVPV 114

Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID-PQLSLEAAALKAGSFSQIDCRKV 957
            GF DR+D+  +G V + DYKTG  P            Q+   A          I  +  
Sbjct: 115 RGFIDRVDVAPTGEVRVVDYKTGKKPLPR--YSHDAQFQMRFYALVYWR-ILGTIPAQ-- 169

Query: 958 ANLFYIRLKQKFKIDCITNDKK--KYSADELSEKSL 991
             L Y+++     +     + +  +    +L  K  
Sbjct: 170 LRLMYLKVLDSMFLAPTREELEYFERDLGDLWAKIE 205


>gi|269796104|ref|YP_003315559.1| ATP-dependent DNA helicase PcrA [Sanguibacter keddieii DSM 10542]
 gi|269098289|gb|ACZ22725.1| ATP-dependent DNA helicase PcrA [Sanguibacter keddieii DSM 10542]
          Length = 857

 Score = 78.8 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 76/706 (10%), Positives = 174/706 (24%), Gaps = 88/706 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A  E+R     I G  +  +  + +           +            
Sbjct: 76  SEILAITFTNKAAAEMRERVAAIVGPAAGRM-WVSTFHSACVRILRREAKSL-------- 126

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            +++   +         +L  ++       P   P         AK L + I  ++ E  
Sbjct: 127 GLRQSFSIYD--SADSQRLITMVLRELDLDPKKFP---------AKQLQNKISSLKDELV 175

Query: 165 KWEDLHALKNEKYGMWWLL--AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
             E   A                  L      +  RL + +A       ++ +    EH 
Sbjct: 176 TPERYAAESGASSPQGSSANEVDQVLSDVYSRYQARLRQAHALDFDDLIMSTVTLLQEHP 235

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT-- 275
                 +     +++     +  A   L+  +A  P  +            +  +     
Sbjct: 236 PVAEHYRRRFRHVLVDEYQDTNHAQYILVRELAGSPARSASAHDESSPHDESSPHDGDAA 295

Query: 276 ---------EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                            +    +    Y+        +I   +       +  +      
Sbjct: 296 PAPTEPAAAPTLPPGELTVVGDADQSIYAFRGATIR-NILEFEADYPDARTILLEQNYRS 354

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLD 383
                   +    RNTD    ++       + +    ADNE EEA  IA     L  +  
Sbjct: 355 TQNILTAANAVISRNTDRKPKRLWTDAGEGAKIIGYVADNEHEEARFIAQEIDRLGDAEK 414

Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                 A+       +R ++  L R G+   +  G           + + L A+   +D 
Sbjct: 415 VRPGDVAIFYRTNAQSRALEEVLIRVGLPYKVVGGTRFYERREIKDVIAYLRAVANPDDD 474

Query: 444 MAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
           + +  ++  P        E  +                   +I  L +     +   ++ 
Sbjct: 475 VNLRRILNVPKRGLGERAESMIVAQAERDRSSFGEALDRLDEIPGLTARSRTPLKAFRDL 534

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                  +       E+   ++D                +       + +  +L     +
Sbjct: 535 MDGLRELAEGGAGPAEVIGEVLDRTGYL-----KDLRASDDPQDESRVENLAELHAVAAE 589

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
               +    L +          S       ++G                          +
Sbjct: 590 FEESEPEGTLADFLERVSLVADSDQIPSADDSGHEGT---------------------PV 628

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                + ++    ++ L F  + L G+ +G +P   +              L    +   
Sbjct: 629 VDPGVVTLMTLHTAKGLEFPVVFLTGMEDGTFPHMRS--------------LHDEVELAE 674

Query: 683 QAAHDFEMANGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723
           +    +      R  +Y      RS         ASR+L  +    
Sbjct: 675 ERRLAYVGITRARERLYISRSAVRSAWGMANEFPASRFLDEVPEEL 720


>gi|182679134|ref|YP_001833280.1| hypothetical protein Bind_2171 [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182635017|gb|ACB95791.1| conserved hypothetical protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 142

 Score = 78.8 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 53/145 (36%), Gaps = 17/145 (11%)

Query: 7   NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
            VFTIAP SPF R  + AL +G +++ F     +P  LA  TIYVP +RA + L  E   
Sbjct: 5   KVFTIAPGSPFLRTFVTALKDGKIIDGF--TIADPFALAKTTIYVPMRRAARALADELAN 62

Query: 67  ----------ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
                          + +LP IK  G + +               P S I R       I
Sbjct: 63  SLIFSSPGSGAAAPSAMLLPRIKPFGGIEKRPKHRCCSTE-----PRSTIPRRRIPCSRI 117

Query: 117 LIWRNKLPDIIKDLYPESPLSLPIS 141
             WR    D     +         S
Sbjct: 118 CRWRRAKEDKRPRFFHSGLWFNIRS 142


>gi|289662331|ref|ZP_06483912.1| exodeoxyribonuclease V gamma chain [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 1137

 Score = 78.8 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 105/963 (10%), Positives = 223/963 (23%), Gaps = 129/963 (13%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
            E  R  P  PLL   V + +P     + L+S      G  + +     + G+ V     
Sbjct: 26  QELRRPVPGQPLLQPEV-VLIPQVAMRRWLQSTLAAEHGVAANL--EFLTPGEFVARALE 82

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
            +L  + +     +   RL                    L P +             LA 
Sbjct: 83  RNLGAADDDLDMATTQWRL-------YAALQTDLGSDAALAPLAGYLADGDALKPWALAG 135

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            L  + +  +   + W  L                  +                      
Sbjct: 136 ELGSVFEKYQAWRRDW-LLRWEGGADPDDPQARLWRGIA------------SGRQYRARR 182

Query: 211 QIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
               +   A       +G    +         P   R+++T A        LP       
Sbjct: 183 IGQYLDRYARADGPVPQGLPQRLFAFAILNISPDVLRVLATQARVGTLHFYLPTPTQGYW 242

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
             +      +  +            Q     LL        D   L      ++  + + 
Sbjct: 243 GDLQTLWQRRREDGAVQLFAE----QVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEIA 298

Query: 328 SKSFLPPDTSD--------------------MRNTDILENKIPNIQKCFSDVALIEADNE 367
           + +                             R    +   +P +      + +      
Sbjct: 299 AYADPLDSGRRTLADGGLGDSLLRRMQSDLFHRRAPPVPALLPAVNLHDPSLQVHACHTR 358

Query: 368 REEAISIAIALRMSLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDI 415
             E   +   LR  LD+         ++ A+++ + +        +         +   +
Sbjct: 359 LRELQVLHDQLRALLDDTRFDPPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYAL 418

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY--------LSRA 467
           +   PL++   + +  +LL           I  L+                        A
Sbjct: 419 ADASPLASEPLAEVFLTLLGLPIARFGLHEILDLLASAPIAEAAGLDEAGLERLRSWLHA 478

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
             A   +     +      D        +                               
Sbjct: 479 AGARWGLDAAHRRQHQAPGDDAYTWRFALDRLLLGHASGADVDIDGVAPWPQLEGSALAA 538

Query: 528 LQCITPLVTYKTNKNSTCGNL-SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           L  +  L+       +      +  +W +  +  L+ +              +  + L  
Sbjct: 539 LDTLLRLLRVLERHQALLAEAMTPVEWRERLLGLLEALIPTTPTAPRAQRALDRLRALID 598

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            F++             E +      + GE+       +  +     +  RLL F  + L
Sbjct: 599 QFARDAVRAEYAGKVPAEVVRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRVICL 658

Query: 647 GGLNEGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
            G+N+G +P+             L    +   +  T E         F  A    +L Y 
Sbjct: 659 LGMNDGDFPRRDPAAGLNRLTAELGTDRRRHGDRSTREDDRFLFLQLFASAQEVFYLSYL 718

Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFD------------------------------- 729
            +   +      S  +  LL                                        
Sbjct: 719 GADARDGSVREPSVLVSELLASAAQYHVANNALDTLVVRHPLQPFAAAAFGALGDESGDG 778

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS----EIKQLINDPYAV 785
              +R      W   +D    Q     P     L A       S    E+++L  DP   
Sbjct: 779 ADPRRFSYRRQWRPAVDSLVGQRQPLAPWVAGALPADDVAVPASVSIDELRRLFADPAGQ 838

Query: 786 YARRILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
           + R  L +       +D D        RG   + +  ++ +  +  +T  +   ++    
Sbjct: 839 FLRHRLGMRLPDPAGEDSDLEPLLAPTRGLDQYGLQQQVFEAALAGDTERLYERLRA--- 895

Query: 841 SHFEKENLPPHIDIIWR-HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
                        +  R       + +F +   +  +   +        + ++   I L 
Sbjct: 896 RALLPSGPLGRRQLDERVAQLRPYADAFRQWRGESPAESRR--------LQVQIGDIQLH 947

Query: 900 GFA 902
           G  
Sbjct: 948 GRV 950


>gi|325066848|ref|ZP_08125521.1| ATP-dependent DNA helicase PcrA [Actinomyces oris K20]
          Length = 649

 Score = 78.8 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 67/655 (10%), Positives = 165/655 (25%), Gaps = 83/655 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD-----VVEEKFTADLLLSYNL 99
             +     T +A  E+R     + G     +  + +        +  E   A L  ++++
Sbjct: 47  GEILAITFTNKAAAEMRERVTALVGPAGERM-WVSTFHSACVRILRREHEAAGLRSTFSI 105

Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
                +        RLI +   +L    K   P++              A  ++D+ + +
Sbjct: 106 YDAADS-------TRLITLIVRELGIDPKRFTPKT-------------FAHRISDLKNEL 145

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
                                       L    + + +RL   NA       +  +    
Sbjct: 146 ----ITPAQFAERAVTSNP-----LERHLAEVYRAYAQRLSSANALDFDDIIMRTVALLQ 196

Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA---------IVLPGLDCH 265
                    +     I++     +  A   L+  +   P  +          +    D  
Sbjct: 197 TRPAVAEMYRRRFRHILVDEYQDTNHAQYVLVRELVGGPGTSGAGSALPPGELTVVGDSD 256

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +   T ++            +P      L       +  +     V +   GR  
Sbjct: 257 QSIYAFRGATIRNIEEFE-----EDYPSARTILLEQNYRSTQNILSAANAVISRNSGRR- 310

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSL 382
                               E  +       + +    AD+E +EA  I+     L    
Sbjct: 311 --------------------EKNLWTAAGDGAPITGYVADSEHDEARWISQEVDRLADEH 350

Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               +  A+       +R ++    R G    +  G             + L A+   +D
Sbjct: 351 GIRPRDVAVFYRTNAQSRALEEAFMRAGQPYKVIGGTRFYDRREIKDAIAYLRAVDNPDD 410

Query: 443 FMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
            + +  ++  P        E  L+       +   +   ++              A  + 
Sbjct: 411 DVNLRRILNVPKRGLGDKAEGALAEHAARYAVSFGQAVADAAGAPREAQTGETENADGQA 470

Query: 502 ---NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                  P     L+   +       + +      +       +     L  S +     
Sbjct: 471 SSSGAGEPPEVEGLTTRARNQVRGFHELLTTLRHMVTAGDGVADILDSALDASGYLAELR 530

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                        L  L         ++    + +    +   A       +  ++ E  
Sbjct: 531 ASDDPQDATRVENLAELHSVASDFQAANPDGTLADFLERVSLVADSDQLPPSADLEDEDA 590

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
           + + E+   + ++    ++ L F  + + G+ +G +P + +         +  L 
Sbjct: 591 R-QAEEQGQITLMTVHTAKGLEFPVVFVTGMEDGTFPHSRSLAEETELAEERRLA 644


>gi|320168377|gb|EFW45276.1| ATP-dependent DNA helicase Rep [Capsaspora owczarzaki ATCC 30864]
          Length = 1072

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 70/730 (9%), Positives = 174/730 (23%), Gaps = 89/730 (12%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             +V    +         ++ +   T +A  E++S    +  +    L +  +   V   
Sbjct: 49  RVIVHRVAHLIQTGTDPRTILLVTFTNKAAAEMKSRLQLLVQEPLAKLVMAGTFHSVCAR 108

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                      L+   S I         +     ++   +KD     P   P        
Sbjct: 109 FLRRHA-RDVGLSSNFSIID-----TEDVKALLKRVIQELKDTK--WPKGKPRDVI---- 156

Query: 148 LAKNLADIIDII---ETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIASKYWTERLVELN 203
               +   +  I   + +    ++      +K    +            + +   L   N
Sbjct: 157 ---EVRTCMQEISKWKNQNVTPQEARVQLQKKTAQHYEKHNMAHAADVFEAYERNLRASN 213

Query: 204 ASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                   +  +R    +          ++     +      +  T+        +    
Sbjct: 214 LLDFDDLMLFGLRLFRTNERVLAPYTQALVDEFQDTNKLQFSMAETMFRT--VHNITVVG 271

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       +      S           T                             +  
Sbjct: 272 DPDQSIYGFRFAEPTSFKRIQEIDPART-------------------------TVISLIQ 306

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                +       T     ++    ++            ++A +  EEA  IA  +   +
Sbjct: 307 NYRSTNSVLRLARTVISSKSNAESLELFTENGDGVPATFLQAQDPDEEARVIAYEIMRLV 366

Query: 383 DENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                     A++     + R ++  L  + +   +  G+            +LL  +  
Sbjct: 367 RNCNLKFSDFAILVRVNAMTRAIETALASYQLPYRMVGGLRFFDRKEIRDCVALLRLVSN 426

Query: 440 LNDFMAIATLVKHP--------LAKFGFPEKYLSRA------------------------ 467
            +DF++   +   P        ++K                                   
Sbjct: 427 PSDFISFERVANVPKRGVGDSSISKIIDEALMYRTNPLGLIMEHDRVTGMNVNAWTSLQT 486

Query: 468 -KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
               L    +R      ++ D+   +L RI    +         +   E+    + +   
Sbjct: 487 FCELLLDCRMRHMSGKLNVRDMLHTILTRIGYFAHLEATEPDDYKTRIENVNELLAIAAR 546

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
                       +       N + +  T  + T               L  +E+    + 
Sbjct: 547 FDAEGLSAAEVVSLSTQRDANQAQAQATTQSATTPNPAAAAPEAPAKKLTLKEKTAQKAR 606

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
             +      +     +   I     L+  ++     E +  + +     ++ L +  + L
Sbjct: 607 QSALYRSAVAMTMHGSGRSISEFAELVSLQSSTDSAETADAIVVSTLHAAKGLEWACVFL 666

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
            G+ E + P   A +      +  +  L     Y+G     F +        YT +    
Sbjct: 667 PGVEEMMLPHYMAVSTDNPESIAEEKRLL----YVGVTRSQFFVYLSACTSRYTGAGHVV 722

Query: 707 NIPTIASRWL 716
                 SR+L
Sbjct: 723 YPDL--SRFL 730


>gi|259500613|ref|ZP_05743515.1| ATP-dependent exonuclease subunit B [Lactobacillus iners DSM 13335]
 gi|302191302|ref|ZP_07267556.1| hypothetical protein LineA_04762 [Lactobacillus iners AB-1]
 gi|259167997|gb|EEW52492.1| ATP-dependent exonuclease subunit B [Lactobacillus iners DSM 13335]
          Length = 1157

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 102/891 (11%), Positives = 237/891 (26%), Gaps = 135/891 (15%)

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
           DL+++ +E            L+I    + + L +    +       +++      +    
Sbjct: 138 DLNSISHEAVTEETSRKLHDLQIIYDEFIQMLGDH--FTTKDGIQLILKTVMNKKLSIDN 195

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
                 G +    +   ++  +A   + ++                  +   N       
Sbjct: 196 MNFFFCGFSYFSLSELNIVKIIAKKAHLSVFAF------------KTKDAQINDKVMEGD 243

Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
           Y    Q ++AKL++F ++            N        ++  +               N
Sbjct: 244 YDYIVQSTIAKLINFFNVNSLKFSTKEYGYNINLNNKEKLNAIWT-------------GN 290

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL 404
                    + V LI+AD+   E   +A  +   +       K   ++  + +       
Sbjct: 291 IPQQGLDLTNYVHLIKADSRYAEINFVAQTIYQQVVFNHYRYKDFLVLAPNLSEYETYLT 350

Query: 405 -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPE 461
              ++  I++       +       ++ ++ +          I T++K  L   ++   +
Sbjct: 351 PIFSQNNISMFNDLQKQMKFHPLVVMIENIADINDMGFKTQDIITILKTRLLIPEWYTDD 410

Query: 462 KYLSRAKNALELVALRGNKNSYDI----MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                  + LE   L  N N         D     +  +              +   E+ 
Sbjct: 411 IKFIADVDLLENFVLAHNINHQLWKKSFYDFVDNNISHLDQINEKVEKLDKLRQFIIENI 470

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +  +  +  +      +  +         N  +  W        +N  ++          
Sbjct: 471 DNLITQLHKLTNVQEAVTLFWNFLLKNKINKKLEKW--------RNTAINNGDLQLAQQP 522

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           E+    L+ L    +      + N   + DI+                  + +      +
Sbjct: 523 EQIWALLNKLLKDYVLIAE--EFNTENFFDILISGFSEANFSQIPSVLDAVTVSEIGMVQ 580

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY-----------IGQAAH 686
             +F  + + G      PK   K  FL+    ++LN   A++            + Q   
Sbjct: 581 NNSFKQVFIIGAVNNSLPKIQNKPGFLNIENINELNNSIADEQQYIENNQEVNNLDQTYQ 640

Query: 687 DFEMANGTRH-LIYTRSL-RENNIPTIASRWLQRLLV--LGGTDFFDNLKKRGQCYLDW- 741
             ++ +     +  +  +   +N    AS + Q +            +L +  Q  L + 
Sbjct: 641 FGDVLSLASDGVYISYPIINVSNEKMEASIFYQDIKNTLNLTEYVQHDLPENQQQLLSFI 700

Query: 742 -------------------------------TRKLDYTTKQ-------PHYKRPKPFPPL 763
                                             L     Q       P    P     L
Sbjct: 701 TTPQASLGYIVYLKNKTNDDISNLLALTPSNQALLFDNVIQASSFKNKPVNLTPALAQEL 760

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                  S S+++    + Y  +    L L     F+ +      G  +H  +  L+K  
Sbjct: 761 YGNNINISISQLETFYANSYEYFLTYGLHLHKR--FENELTNIQSGNYYHETMDRLVKYL 818

Query: 824 INKNTPEIN------HLMKQIIDSHFE-----KENLPPHIDIIWRHLFHKISHSFLE--H 870
                           ++   I    +     +E L    +        + +   +   H
Sbjct: 819 KQHKLDFAELTKEKISVILANIQDELKTKGSYRELLGDPFNEFLFKCLDRTTKKVVNYWH 878

Query: 871 EEKIQSSIEKIFVNIPAKMA--IESIG------------IHLTGFADRIDLLK--SGFVD 914
           +   Q+    ++  +       I  +             I L G  DR+DLLK     + 
Sbjct: 879 QNMCQTKFSPLYSELSFGNKEYIAGLSYQFIDKQQKTHHISLRGKIDRVDLLKDCDNEIL 938

Query: 915 -ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG-SFSQIDCRKVANLFY 962
            + DYK+          +  I  Q+    + L+        +   +   FY
Sbjct: 939 QLIDYKSSAKKFDFNLFKNGISMQMLSYLSVLQDNSHIFSTNPVNIFGAFY 989


>gi|159902871|ref|YP_001550215.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9211]
 gi|159888047|gb|ABX08261.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9211]
          Length = 809

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 71/748 (9%), Positives = 189/748 (25%), Gaps = 111/748 (14%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKST---ILPIIKSLGDVVEEKFTADLLLSYNL 99
             + +     T +A +E++     +  K+     +     S+  V + +F   +      
Sbjct: 55  DPSEILAVTFTNKAAREMKERLELLLAKRIAKYQLDQPWSSVSLVEQNQFRTRIYREVTK 114

Query: 100 NPPVSNIQRLLE-LARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK------- 150
           +  +     L   L R  I  + +K        +     +   S    I +         
Sbjct: 115 DLWIGTFHALFSKLLRFDIEKFVDKEGLKWTKYFSIYDETDAQSLIKEIIIQDMNLDPKR 174

Query: 151 ----NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
                +   I   + +    +                    +      + + L   NA  
Sbjct: 175 FEPKKVRWAISNAKNQGILPDQFTQ------SAEGQR-GKLIAQVYSLYRKALAANNALD 227

Query: 207 PVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVA---------NH 252
                +  ++   ++             +++     +      L+  +          + 
Sbjct: 228 FDDLLLLPVQLLKQNEQVRSYWHNRFKHLLVDEYQDTNWTQYELIKLLVTNGINPSFFSS 287

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
            +   V    D       +     +       +       Q           +       
Sbjct: 288 WSKRSVFVVGDADQSIYSFRAADFRILMGFQEDFKNKNSLQ----------GLSNVVK-- 335

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                  +       S      ++    N + L+  +   +     + L   D+E  EA 
Sbjct: 336 -------LEENYRSTSTILDAANSLISNNKERLDKVLKATRGEGELIKLTRCDDEISEAE 388

Query: 373 SIAIALR--MSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
           ++   LR   + +++ K    A++      +R ++  L R+ I   +  G+         
Sbjct: 389 AVVHRLRLLEAHNKDLKWGDIAILYRTNAQSRVIEESLVRWNIPYIVVGGLRFYDRREVK 448

Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            + + L  +   +D +++  ++  P                                  +
Sbjct: 449 DILAYLRLLINPSDSVSLLRILNVP-------------------------------KRGI 477

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
               + R +   +   +P W+     E            L     L+       +     
Sbjct: 478 GKTTVQRFSDASSQLGIPLWEVVSDPEAIRSLGGRSAKGLLKFKELIDDLRLSLNNTEPS 537

Query: 549 SISDWT-KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +     + +    + +              +E    S  + +  E              
Sbjct: 538 QLIQLVMEKSGYISELIATATDEAEERRRNLQELVNASLQYQEENEAAD--------LEG 589

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            +           K      + ++    S+ L F  + L GL +G++P   + +   S  
Sbjct: 590 FLATAALASDADKKDTAHDRITLMTLHSSKGLEFPIVCLVGLEQGLFPSYRSLDDPASLE 649

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
            +  L      +   +                   +R    P ++S +L  +        
Sbjct: 650 EERRLCYVGLTRAKERLF-----LFHATERRIWGGMR---EPAVSSIFLSEIPSELIEG- 700

Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
             +++  G   L   R++D  T+    +
Sbjct: 701 --DIQLAGGAALRRERRMDRLTRVDRRE 726


>gi|84494621|ref|ZP_00993740.1| hypothetical protein JNB_07484 [Janibacter sp. HTCC2649]
 gi|84384114|gb|EAP99994.1| hypothetical protein JNB_07484 [Janibacter sp. HTCC2649]
          Length = 297

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 63/182 (34%), Gaps = 11/182 (6%)

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
           +  +    S S +   ++ P     + + K       ++       G   HN + +    
Sbjct: 17  MPPKLYAASPSRLLAHVDCPRRYRMQYLDKPRPEQRPQRAHT--SFGLAVHNALRDWWDL 74

Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
             ++ T      + +      +     P   ++WR          + +   +        
Sbjct: 75  PRDRRTASAGRELVRTSW--IDVGFRDPEQSMVWRKRAQ---EHVVAYLGGVDPDDPPRG 129

Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
           +     ++  S  + +TG  DR+D  + G + + DYKT   P  +   +   P ++L AA
Sbjct: 130 IER--TVSFISGALRVTGRIDRLD-DRDGELVVVDYKTSQKPLSDDDARTSLP-MALYAA 185

Query: 943 AL 944
           A+
Sbjct: 186 AV 187


>gi|254515002|ref|ZP_05127063.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [gamma
            proteobacterium NOR5-3]
 gi|219677245|gb|EED33610.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [gamma
            proteobacterium NOR5-3]
          Length = 1042

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 93/836 (11%), Positives = 205/836 (24%), Gaps = 65/836 (7%)

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179
            R  L +          L+       ++  A+ +ADI        +  +    L  E++  
Sbjct: 228  RAALINDQLTWPDWVSLAKAKPAKASLDAAQPVADI---AARFGEHPDLCAEL--EEFSR 282

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA----EHLMKGTKGPIIIAGS 235
               L A       +++            +  +  L    A      +++     +++   
Sbjct: 283  ELFLIAA---DTLEHYQNIKQSKGLVDFIDQEQQLYALLAVPAVAGVLREELELLLVDEF 339

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
              + P    L + ++   +   V+   D       +               T   +    
Sbjct: 340  QDTSPIQLALFTRLSELADN--VIWVGDLKQSVYGFRGADPALMQAVIDGVTTGGNEPTV 397

Query: 296  LAKLLDFLDI----KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
            L K                          +   +  + S L    +          K+ +
Sbjct: 398  LDKSYRSQPALVNYTNALFVPAFAHKLPAHQVELAPALSQLSTAPAVESWQLAKGKKVDH 457

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                   ++ + ++        +    +          A++         + + L++ GI
Sbjct: 458  YAAVAEGISQLLSEGRE----VVDKETKQLRSLLPADVAVLCKTNADLADMAMALSQRGI 513

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK-----HPLAKFGFPEKYLSR 466
                     L  T  + +  + L  +    D +A A ++       P A       YL+ 
Sbjct: 514  PAAY-KRAGLLATPEAVLTLACLRRLVSQEDSLATAEIISLSGSLSPDAWLAERIDYLAE 572

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
             K   +      N     +  +KS ++     +  +  +       + E           
Sbjct: 573  NKTPNDWGYGYKNSPLVGLDRVKSRLIYLTPVEALDLAIHAGNVLETIETWGPNPAARQQ 632

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
                +  L+ +  +    C        T   +  LQ +  DE          +     ++
Sbjct: 633  RYDNVDALMKHAHDYIEQCSASHEPATTPGLILWLQTLAGDERDT-------QAVGGNAA 685

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            +          ++   +  +++  +L            +  + +   L  R L       
Sbjct: 686  VRVMTHHGAKGLEWPVVIAMNLNAKLKPRLFGLTVQSSNKAVRLDDPLAGRTLR----YW 741

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
               N             +     +   +K  ++ +      +      R  +        
Sbjct: 742  PRFNGSNEAGVRVLEEIVRGTEGTKALIKEEDEGL---RLLYVSLTRARDTLIL--ALPE 796

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
            N+ T     L        T     L                    P             +
Sbjct: 797  NVETGPWMGLLNAHWFVPTSGQLQLPNGISIPTRVRNLAPGDAPPPAPGYYALAIKKPQK 856

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
                   +    +       A R+L++      K + D    G+  H  I   +      
Sbjct: 857  LDLLPLGKTPSSMMPIVTARAGRVLEIGASLGVKGNVDALTLGSAVHAAIAARL------ 910

Query: 827  NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
               +    +    D              I           F +   K  S        +P
Sbjct: 911  FGQDSKSRILDEFDI----------AKNIDVKSLDDYLDGFFDCVNKAFSP-TAAGGEVP 959

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDI-TDYKTGDNPKKETAQKLIDPQLSLEA 941
                  + G  + GF D +  L+SG   I  D+KTG     E A      QL   A
Sbjct: 960  IVYR-NAEGQQIRGFIDML--LESGSQRILIDHKTGVWGVPEEAALRYSGQLEAYA 1012


>gi|89074458|ref|ZP_01160935.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34]
 gi|89049746|gb|EAR55296.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34]
          Length = 723

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 63/607 (10%), Positives = 138/607 (22%), Gaps = 127/607 (20%)

Query: 166 WEDLHALKNEKYGM--------------WWLLAADFLKI--------------------- 190
            ED + L ++                   W        I                     
Sbjct: 108 PEDFNILDSDDQMRLLRRLIKAQNLDEKHWPARQAAWYINAKKDEGLRPKHVETYSDPVE 167

Query: 191 -----ASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIP 240
                    + E              +       ++       +     I++     +  
Sbjct: 168 QTWLRIYTAYQEACDRAGMVDFAELLLRSYELLRDNKHIREHYQARFKHILVDEFQDTNS 227

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                +  +A       V+   D       W     +                       
Sbjct: 228 IQFAWLRLMAG--PDCHVMIVGDDDQSIYGWRGAKIE----------------------- 262

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
              +I+R   +  G  S  +              +     N + +  K+         ++
Sbjct: 263 ---NIQRFLNEFKGASSIFLEQNYRSTGNILNAANELIANNNERMGKKLWTDGGEGEPIS 319

Query: 361 LIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAG 418
           L  A NE +EA      ++   D+     ++A +      +R ++  L + G+   I  G
Sbjct: 320 LYSAFNEIDEARFAVGKIKEWRDQGGSLNETAFLYRSNAQSRVLEEALIQAGLPYRIYGG 379

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
           +            S +  I   ND  +   +V  P    G       R          RG
Sbjct: 380 MRFFERQEIKDALSYMRLISNRNDDASFERVVNTPTRGLGDRTLETIRLVAR-----DRG 434

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                  + L    +                         LA    + + + I  +   +
Sbjct: 435 LTMWQSSIALLEEQV-------------------------LAGRAANSLRRFIELINALE 469

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
            +           +  + +            +    +   EE  T +  F    E  S  
Sbjct: 470 DDTADLPMYQQTDEVIRHSGLRAMYEQEKGEKAQARIENLEELVTATRQFEIPEEAESMT 529

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
              A                    +    + ++    ++ L F  + + G+ E       
Sbjct: 530 PLAAFL-----AHAALEAGDGQADDFEDAVQLMTMHSAKGLEFPVVFMVGVEE------- 577

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN----NIPTIASR 714
               F S     ++     E+ +        M    + L  T +        +     SR
Sbjct: 578 --GMFPSSRTTEEVGRLEEERRLCYVG----MTRAMQKLYITYAEMRRLYGKDNFHKPSR 631

Query: 715 WLQRLLV 721
           +++ +  
Sbjct: 632 FIREIPD 638


>gi|291295632|ref|YP_003507030.1| Exodeoxyribonuclease V [Meiothermus ruber DSM 1279]
 gi|290470591|gb|ADD28010.1| Exodeoxyribonuclease V [Meiothermus ruber DSM 1279]
          Length = 833

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 63/626 (10%), Positives = 145/626 (23%), Gaps = 78/626 (12%)

Query: 152 LADIIDIIETEEKKWEDLHALKNEKY--GMWWLLAADFLKIASKYWTERLVELNASSPVG 209
           L D+ D           L  + +          L A+  +    +   R  E    +   
Sbjct: 264 LRDLKDKARRAAL---FLPEMGSGDLFLLKHRHLLAEAFQGVRNFLQRRKREDGVLNFAD 320

Query: 210 YQIALMRAEAE----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
            ++  +RA          +      ++     + P    ++  +      A+V    D  
Sbjct: 321 LEVHALRALDHPPVLEAYRARWRAFLVDEHQDTNPIQGEILERLFGEAPVAVV---GDRK 377

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +            T P+    +L      +   ++ +  ++    G   
Sbjct: 378 QAIYGFRYADHRVFTGFVEE--VKTRPRGRAVRLEANYRTQAPLLEAVDRLAEGFLGPLH 435

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
              +   P   S       L        K    +   EA    +E  ++           
Sbjct: 436 QPLQPTRPAWNSPEPCLWRLVFSGSLPSKDKERLREAEARRVAQEVRTLLEKGLPDGPLR 495

Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
             + A++    N        L   GI    + G  L  T  +    +LL  +    D +A
Sbjct: 496 PGEIAILARTWNTLEPFTRALEAEGIPAVSAGGGSLLETPEARDGMALLAFLADPRDDLA 555

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           + TL++ P         +                       + +       A Q +    
Sbjct: 556 LLTLLRSPYFAVPDAVLHRLA--------------------EGRQAASWWEALQADGPEE 595

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
           P        +  E        +   +       T   +   +L   +           + 
Sbjct: 596 PR-------QMLEELRQKRSLLPSFLLQEADLATGYTAVLAHLPGPERRLADYGAFLELV 648

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                +   LW   +     +                             E  +P +   
Sbjct: 649 RGLEARGEGLWGVVDRLRTLARRRL-------------------------ELPRPPLGGL 683

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT--------- 676
             + +L    ++ L +  + L GL+      + +      R +   L+ +          
Sbjct: 684 EAVQLLSVHAAKGLEWRVVFLVGLDRRPAAPSPSLLLHPERGLGIRLDKEPGGLYAELLK 743

Query: 677 ---AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
                +   +A   +      R L+            + +   +        +      +
Sbjct: 744 ESLRGQVEEEARLLYVALTRARDLLVLSPGFGARHFWMTTAEEEFPRPPSFGELLGGCWE 803

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKP 759
           R         +       P      P
Sbjct: 804 RVWDLAQVKEREASPNDYPEKPVALP 829


>gi|190572176|ref|YP_001970021.1| putative ATP-dependent DNA helicase Rep [Stenotrophomonas
           maltophilia K279a]
 gi|190010098|emb|CAQ43706.1| putative ATP-dependent DNA helicase Rep [Stenotrophomonas
           maltophilia K279a]
          Length = 658

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 58/712 (8%), Positives = 159/712 (22%), Gaps = 126/712 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T ++ +E+R    +   ++      I +   +  +    +             
Sbjct: 50  RIAAITFTNKSAKEMRERVAKRLREQDADEVTICTFHALGLKFLQIEHAAV--------G 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R   +             +      +                +++ +++   +     
Sbjct: 102 LKRGFSIFDADDAAAQIKDLMYGAKPDDI---------------EDMKNLVSRAKNAGLS 146

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E   A                     + +  RL   NA          ++   E+    
Sbjct: 147 PEQAMAAARSNREKEAAS-------VYERYQLRLTAFNAVDFDDLIRLPVQILEENPEIA 199

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +   G +++     +  A  RL+  +A        +   D       W     ++  
Sbjct: 200 LAWRERIGYLLVDECQDTNDAQYRLLKQLAGDKGNFTCV--GDDDQSIYAWRGANPENLQ 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL                            ++     +     
Sbjct: 258 QM-----GRDYPALEIIKL---------------------EQNYRCSNRVLRAANALIAN 291

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL---RMSLDENKKKSALITADRN 397
           N      K+ + Q     + + E  N   EA  +A  +     S +       ++     
Sbjct: 292 NPHEHLKKLWSDQADGERIRVWECRNSEHEAEKVAAEIAFVAQSRNVPWSDFCILFRGNF 351

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  +    I   ++ G             + L  +   +D  A    V+ P    
Sbjct: 352 QSRPLEKAMQLLRIPYHLTGGTMFLERQEVKDTLAWLRLLVNPDDDTAFMRAVQSP---- 407

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                          + +    +A               + E  
Sbjct: 408 ------------------------------KRDVGAGTLARLAELAQEKDMPMAQAAEAI 437

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L       +        +  +    ++  D  +        +     +      +
Sbjct: 438 GALQQLPPRAANSLARFTDILRDLRAQMRQVTSGDMIRKVAKESGLLSELRQQAKEEASY 497

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +     +  L            A        +   +   +   K E  + + ++    S+
Sbjct: 498 QRRANNIEELAQWFEGGPRGATAAD------LAGQLALLSRSDKDEGGNQVRMMTMHASK 551

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-H 696
            L F  + + G           ++  L   +  D      E+        +      +  
Sbjct: 552 GLEFPYVFIVGC----------EDGVLPHQVSLDEGNLQEER-----RLLYVGITRAKIQ 596

Query: 697 LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           L  + S        ++    SR+   +          +         +    
Sbjct: 597 LWMSYSKLTRKFGEHVRLKPSRFFDEIPAEEIQRDGADPVADAARKKERASA 648


>gi|296454009|ref|YP_003661152.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183440|gb|ADH00322.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
          Length = 897

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 189/689 (27%), Gaps = 82/689 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A  E+R     + G  +  +  + +           D            
Sbjct: 64  SQILAITFTNKAAAEMRERLGSLIGPVAQRM-WVSTFHSACVRILRRDGKSIG--LKSGF 120

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI-WLAKNLADIIDIIE--T 161
           +I    +  RL+ I   +    IK   P S L       N +    +NLA          
Sbjct: 121 SIYDSADSERLVKIIATEFNLDIKRYTPRSILGRISDLKNNLTGWKENLAVHAPDFTPGQ 180

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--- 218
              ++  +  L+                +    +  RL   NA          +      
Sbjct: 181 RGYQFGTVDDLE------------AIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTD 228

Query: 219 --AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                        I++     +  A   L+  +A    G   +PG               
Sbjct: 229 PAVAEYYHHRFRYILVDEYQDTNHAQYVLVRELAGVDTGEKAIPG------------APN 276

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
              +  +  T      Q   A     +   ++  +   N    M  ++   +++ L    
Sbjct: 277 AGKSGPAWITVVGDSDQSIYAFRGADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAAN 336

Query: 337 SDMRNTDILEN-KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALI 392
           + + N +  +  K+         +    ADN ++EA  +A  +     E        A++
Sbjct: 337 AVISNNEGRKPKKLWTALGKGEPIVGYAADNAQQEAQWVATEIARLHAEEGISYSDMAIM 396

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R ++  L        +  G             + L A+   +D + +  ++  
Sbjct: 397 YRANAQSRSLEEALINTNQPYQLVGGTKFYERREIKDALAYLQALVNPDDDVNLRRILNV 456

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P    G   + +  A       +        D +++ +     +   ++        +  
Sbjct: 457 PKRGLGDRAEGVLLAYAREHGTSFFYALMHLDEIEVPTRTATSLRAFRDLMGALSQFTHA 516

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
            +                                   +++  + +    +     + +  
Sbjct: 517 HDSKPSEI-----------------------------VAEVLEKSGLRAELEKSVDPQDA 547

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
             L    + ++ ++ F +     +   A    +++    + D + +  + E S  + ++ 
Sbjct: 548 SRLENLSQLQSTAAEFEQ-----NTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMT 602

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L +  + L G+ +G +P + +         +  L      +   +       A 
Sbjct: 603 LHTAKGLEYPVVFLTGMEQGTFPHSRSMEDTTELQEERRLAYVGITR--AKQRLYVTRAA 660

Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLV 721
                   RS        + S++L  +  
Sbjct: 661 -------VRSQWGQAADMMPSQFLDEIPD 682


>gi|254506751|ref|ZP_05118891.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus 16]
 gi|219550332|gb|EED27317.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus 16]
          Length = 1194

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 105/920 (11%), Positives = 235/920 (25%), Gaps = 113/920 (12%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY--WTERLVELNASSPVGYQ 211
            D    I+        L A                 K   ++  + + L +L+AS      
Sbjct: 297  DTFIAIDDFLANPISLKAPILAHAIEHCREMLASAKQQKQWLSFDDLLTQLSASIDGDEM 356

Query: 212  IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
              L         +      +I     + P    + S +        +    D       +
Sbjct: 357  GLLAERI-----RTLYPVAMIDEFQDTDPLQYSIFSRIYLDYPQFGLFMIGDPKQAIYGF 411

Query: 272  NTITEKS-----------TNITSSNTTYSTHPQYSLAKL-LDFLDIKREDVKRLGNVSNE 319
                  +             + ++  + +           L       +       V++ 
Sbjct: 412  RGADIFTYIKARNQVSSHFTLGTNWRSSADMVAAVNQIFSLPTSPFIYDQDIPFLPVNHS 471

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ-------KCFSDVALIEADNEREEAI 372
                  V + +            D  E  +P  +            +  I +  +  EA 
Sbjct: 472  PNAEKRVWTMAGQKQPALTYWLQDADEKPLPKGEYLSAMAKATADQIQTILSAAQIGEAH 531

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILT 431
                  + +        A++    +  R VK  L + GI  + +S    + T++ ++ L 
Sbjct: 532  F--EDGKGAHAVQAGDIAVLVRTGSEGRMVKEALAKQGIASVYLSNRDSVFTSVVAADLQ 589

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
             +L A+    +  A+   +   L                        N+    I + K  
Sbjct: 590  RMLQAVLTPENDRALRASLASELFALDAGTLDKL---------NNDENEWESAINEFKEY 640

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
                +              R   E          ++   +      +        +  + 
Sbjct: 641  RKLWVQRGVLPMLRSVMSKRHIAERLLEEDNGERNLTDLMHIGELLQQASTELDSDHGLL 700

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
             W    ++  QN       ++  L  E     +       I     ++ + +    +++ 
Sbjct: 701  RWLAQAISDAQNGLGGSEDQIQRLESERNLVQIV-----TIHKSKGLEYDLVFLPFVLSY 755

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVMQ 669
                E       +  T+  +   E+ L   D   L      ++   T      F+     
Sbjct: 756  REASEAKYYDATQDRTILDITKHEASLKQADKERLAEDLRLIYVALTRAVYGCFIGAAPL 815

Query: 670  SDLNLKTAEKYIGQAAHDFEMANGTRHLI--YTRSLRENNIPTIASRWLQRLLVLGGTDF 727
             +         +  +A  + + +G    I    ++++                       
Sbjct: 816  RNGRSTKEPTGVHHSAMGYLLQDGQEGGINDLAQAIQAQVEALEPVVCTGLPDEHEAPLH 875

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                +          + +D   +   Y          +     + S++ +L  D      
Sbjct: 876  VVATETETLHARTLAQSIDRNWRITSYS--GLVKQGHSHHGDDALSDLMRLDVDSSGEQD 933

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
               L L+        P     GT  H++  E+   +   +      ++     +  E E 
Sbjct: 934  EDEL-LEPEQTIFTFPRGARPGTFLHSLFEEIEFTQPASSEENQQAII-----TLMESEQ 987

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSI------EKIFVNIPAKMAIE--------- 892
            L P     W  +   +  + L      +S I       +  V +   + IE         
Sbjct: 988  LDPS----WLPILQSLIDTVLATPLDGKSIILNQKKPSQRLVEMEFLLPIEVLSAPALNR 1043

Query: 893  -------------SIGIH-----LTGFADRIDLLKSGFVDITDYKT-----------GDN 923
                          +G       L GF D +   K G   + D+K+           G+ 
Sbjct: 1044 VIQRHDPLSAKAGDLGFQNVQGMLKGFIDLVFEDK-GKYYVLDWKSNHLGDDVSYYHGEA 1102

Query: 924  PKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKK 979
             K   A    D Q  + A AL     S++      +    ++Y+ L+             
Sbjct: 1103 LKAAMADHRYDLQYQIYALALHRFLRSRLPNYDYQQHFGGVYYLFLRGMDGESSHGIFSA 1162

Query: 980  KYSADELSEKSLKNLIEIVT 999
            K S      + L ++  ++ 
Sbjct: 1163 KPSL-----EFLDDMDRLID 1177


>gi|39935285|ref|NP_947561.1| hypothetical protein RPA2216 [Rhodopseudomonas palustris CGA009]
 gi|39649137|emb|CAE27657.1| hypothetical protein RPA2216 [Rhodopseudomonas palustris CGA009]
          Length = 887

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 85/746 (11%), Positives = 182/746 (24%), Gaps = 93/746 (12%)

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
              +   +   S S+           D  +  I         ++ + A     EAI     
Sbjct: 167  PLLQELTAHTSVSWTAGPRPTPPWLDAFDVTINRADPTAPAISTVSAATAYHEAIEAIRW 226

Query: 378  LR----MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
             R        E    +    +  +    +        +++    GI ++TT       +L
Sbjct: 227  ARGLMASGEAEPADIAIAAASTGDYDDHLLALRADANLDLHFVHGIKVTTTRDGQAAAAL 286

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
             + + +                           A    E     G    +        VL
Sbjct: 287  ADLLIRGFS----------------QTRMRRLAALCGSETGPFAGLPQGWL------RVL 324

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
               A   +         RL+ +D   A      +   I  L                   
Sbjct: 325  PTDAPLASPASWHRLLDRLTADDWPDATDHTPTLRGIIDLLAKGHPTAAEIGAAFLSGRA 384

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
              +    L            +   +++G       + +    S + A+   ++ +I    
Sbjct: 385  LAIWRKALLAGPSGSLDATLDSLKQDDGLEACVSVAWMP--ASALAASPRRFVRLIG--- 439

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               +  P+      L     + +  L+   +      +      T     +    + D  
Sbjct: 440  MNSSRWPRGISEDRLISDHIIPTAELDPLPVGAADRRDFETILATTSGQIVMSRARRD-- 497

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
              +  + +G++A        +  +   R+    +  +   R + R               
Sbjct: 498  --SEGRLLGRSALL---GPASEEIYIRRNAVPAHAFSETDRLMARPDEFARDS---QAIS 549

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                + +W RK                  +  + ++ S   +       +       L+ 
Sbjct: 550  ATTAWRNWHRKEITPHDGLVRADHPLLQAILGRTQSASSLRLLLRSPLGFVWRYGMRLRT 609

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK------------QIIDS 841
                      D    G L H  +   +               +             ++  
Sbjct: 610  PESGADPLVLDALAMGDLVHMTLDLALATLEKGGGLAAADEAQIAGAVQDAAARIAVVWE 669

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------------- 888
              E+   P  I          ++   L + ++        F  +                
Sbjct: 670  S-ERAVPPALIWRRTLDDARILTTRALTYGDEHLPDAR-SFGEVAFGGATPKADTASPWD 727

Query: 889  ----MAIESIGIHLTGFADRIDLLKSG-FVDITDYKTGDNPKKE-TAQKLIDPQLSLEAA 942
                + I + G  + G+ DR+D+   G    + DYKTG  PK + +     + Q  L A 
Sbjct: 728  SQTPVEIPATGFRIAGYIDRLDIAGDGKRALVRDYKTGRPPKDDISLDGGRELQRCLYAF 787

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
            A+KA                + +           D +    +    +    L      LQ
Sbjct: 788  AVKALLGDD-----------VSVSASLLFPRDQVDFQLGDPEATLTEITGYLQAARANLQ 836

Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028
            +G+             +    YD LA
Sbjct: 837  SGQA--------LIGPDTGGAYDDLA 854


>gi|111225391|ref|YP_716185.1| putative ATP-dependent DNA helicase PcrA [Frankia alni ACN14a]
 gi|111152923|emb|CAJ64671.1| putative ATP-dependent DNA helicase PcrA [Frankia alni ACN14a]
          Length = 1208

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 71/635 (11%), Positives = 159/635 (25%), Gaps = 61/635 (9%)

Query: 188 LKIASKYWTERLVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
           L      +     E +            ++A    E     +     +++     +  A 
Sbjct: 282 LAALVADYRAARRERDVLDFGDQVTYAARLAETMPEVGRAERARAAVVLLDEYQDTSVAQ 341

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
            R+++ +     G  V    D       W   +  + +   ++   +      + +L   
Sbjct: 342 RRMLTGLFG--GGHPVTAVGDPCQAIYGWRGASVANLDHFPTHFARADGRPADVYELSVN 399

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                  +     V+ ++  R  V+                       ++      V  +
Sbjct: 400 QRSGGRLLDLANAVAAQLRARHRVVELRPR-----------------ADVADRGETVVAL 442

Query: 363 EADNEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIP 420
            A +  +E   IA  LR  +D        A++   R     +   L   G+ +++     
Sbjct: 443 HA-SWADEVAWIADRLRAVVDAGTDPGDIAVLVRARGDIPPLLTALQAVGLPVEVVGLTG 501

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
           L T    + + ++L  +       A+  L+  P  +     + L+        V      
Sbjct: 502 LLTVPEVAEIVAVLEVLDAPTANAALVRLLTGPRVR--LGARDLAALGRHAREVVRSPPP 559

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
            +    DL        A   +             +D    +     +          +  
Sbjct: 560 VADAEPDLPGRADPLAAAVADVDPADVVALSDVLDDPGPEMSAEGRLRVRRLAAEIAELR 619

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
            +   G L +      T+     +   E         E     L          G+    
Sbjct: 620 AHIGEGLLDLLHRVVATIGLDVELTATEAAVRAR-RQENVAAFLDVAADFTDPDGTTSLH 678

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
             + ++        G  V      +  + ++    S+ L ++ + +  L+E V+P  T +
Sbjct: 679 AFLGFLRAAREHERGLDVS-GPSGADAIALMTMHRSKGLEWEVVAVPNLSERVFPDVTVR 737

Query: 661 NPFLSRV-------MQSDLNLKTAE------------------KYIGQAAHDFEMANGTR 695
           + + +              +L   E                      +    +      +
Sbjct: 738 DQWTTSPGVLPVPLRGDAADLPAFEVSDQKADLDAFAAEVRAYAEREERRLAYVAVTRAK 797

Query: 696 HLIY---TRSLRENNIPTIASRWLQRLLVLG--GTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            L++            P  AS +L  L      G    D    R     +          
Sbjct: 798 SLLFASGHWWGPAQKRPRGASVFLTELAEHARGGGGRVDLWAPRPAEKSNPALATPRRFA 857

Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
            P    P+P+       R         L   P   
Sbjct: 858 WPIPYEPEPYARRVEAARDVLARLEAALTPPPLGA 892



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 76/254 (29%), Gaps = 38/254 (14%)

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--YSFSEIKQLINDPYAVYARRILKLDFI 796
                 +LD   +    +      P    P     + SEI +L  DP A     +  L   
Sbjct: 973  RALLAELDREAELLVVEERAARVPQLDVPMPANLTASEIVRLQADPAAFARELVRPLP-- 1030

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
               ++      RG+ FH  + EL   R   +  ++       +                 
Sbjct: 1031 ---RQPVAAARRGSRFHAWVEELFDHRALIDAEDLPGAQDAELTD--------------- 1072

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
                  +  +FL      +       +    ++ +      + G  D +  L  G  ++ 
Sbjct: 1073 -DDLRSLQEAFLRTPYGSR---RPAAIEEAFELPLAGR--IVRGRIDAVYDLGGGRWEVI 1126

Query: 917  DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
            D+KTG +          + QL++   A        +D   V +  ++ ++    +     
Sbjct: 1127 DWKTGQS-------SADELQLAVYRLAWAR--LRGVDPSAV-DAAFLYVRTGAVVRPPLV 1176

Query: 977  DKKKYSADELSEKS 990
             + + +A   +   
Sbjct: 1177 TEDELAALLAAPDH 1190


>gi|327188054|gb|EGE55282.1| hypothetical protein RHECNPAF_970020 [Rhizobium etli CNPAF512]
          Length = 895

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 92/740 (12%), Positives = 185/740 (25%), Gaps = 83/740 (11%)

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
                 +L  +          + ++EAD E   A +IA  L     E+ + S ++ +D + 
Sbjct: 190  RIVQRVLSGEPVQPLAGDGTLTMVEADTELMAAETIADWLAALPSEDLRGSVILASDGDT 249

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            A        R    + +SA  P        +L     A ++  D  A+  L   P     
Sbjct: 250  ALLDHALRARGIPALGLSASSP--WRGALQVLPLAFAAAWQPFDPRALLNLFLLPRPPVA 307

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                       + E            +     L+     +  +        +        
Sbjct: 308  AWAARRLARALSEEPGVGGRVWREAWVQIEDRLLEINTRSDADTARRKTDTTLAEWRAWT 367

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                                           +S+   +           +      L   
Sbjct: 368  EVGRFARGEGM-------------------PLSEALAICGRVAAWAMRSDGGDGDRLLMA 408

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                  +   +      S I A  +E   ++  L +G        ++  +  +    +  
Sbjct: 409  VSNAAAAVSDALSRLELSVIPALLLE-RVVLQVLSEGVPNPDHFAEAGAVRAIKAPGALW 467

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK----TAEKYIGQAAHDFEMANGT 694
             +   +I                    R       ++     A     +AAH   +    
Sbjct: 468  SSALRVIWWNFVGPGEKIAITPWDNAEREALIANGVEIDASPAIARRIEAAHSSVIRRCH 527

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-------- 746
             +LI  R     +  T       RL  L          K  +   +    L         
Sbjct: 528  GNLILVRPALARDAQTTLHPMAHRLRPLLKESGAAITFKAERLLREPDAMLAGRILPRQL 587

Query: 747  -----YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                             P        R  S + + +++N   + +A+ IL L      + 
Sbjct: 588  VGRQVQPPAGVPVWTIPPGTTRLTDTRRESATSLTRMLNCQLSWFAQDILNLRPGRFAEI 647

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP--PHIDIIWRHL 859
                   G L H I   L+          I     +  +S   +   P            
Sbjct: 648  PGTDQLFGNLAHEIARRLLLPGAPPAEAGIRTEAIRHFESLLPEIAAPLLQPEHAGELAA 707

Query: 860  FHKISHSFLEHEEK--IQSSIEKIFVNIPAKM------AIESIGIHLTGFADRIDLLKSG 911
              ++    LE   +      +E +   +  +           + + +    DRI      
Sbjct: 708  AREMVPRALEALVRLLHAQGLEIVGSELDREGIQGQLLLQGRLDLLVR-RGDRI------ 760

Query: 912  FVDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ-- 967
               + D K   + +  +E        QL++       G  +          F +R ++  
Sbjct: 761  --AVLDLKWTRSERRYREEVASGRAIQLAIY-----RGLSASDGTGAPGGYFLLRQRRIV 813

Query: 968  KFKIDCITNDKKKYSADELSE--------KSLKNLIEIVTLLQNGEQPFISHLRL----- 1014
                  +T +  +   D+L+         +   +L    TL+  G  P    LR      
Sbjct: 814  AGPGSILTGNPIEADIDDLATLGHVKNDWRLWHDLTTKGTLIAAG-FPDTGDLRPAGLAI 872

Query: 1015 --SEKSNIQSEYDHLARVAE 1032
              +++         L RV E
Sbjct: 873  DAAKEPCRFCNLRGLCRVYE 892


>gi|207093252|ref|ZP_03241039.1| hypothetical protein HpylHP_10851 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 287

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 70/222 (31%), Gaps = 22/222 (9%)

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  + + +  +  +    +        + ++ TLE+R + FD +++   NE   P     
Sbjct: 85  SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 143

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
           + FL+  ++  LNL T         H +      ++ +  +    E +     S  L  L
Sbjct: 144 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEITLSYIESETSKV---SNMLLEL 200

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +                  D+  +                        ++S S +   +
Sbjct: 201 NLHIEPIKDAYTLFAPSPLKDYQEEEIKAAIPKD--------------FSFSASSLNAFL 246

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                 Y   I +    P  +   + +  G+L H ++ E  +
Sbjct: 247 TCKRRFYYHYIKRFKESPKDE---NNSAVGSLLHELLKEAYE 285


>gi|149182415|ref|ZP_01860891.1| AddA [Bacillus sp. SG-1]
 gi|148849878|gb|EDL64052.1| AddA [Bacillus sp. SG-1]
          Length = 1258

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 92/848 (10%), Positives = 211/848 (24%), Gaps = 128/848 (15%)

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP-------------IIIAGSTGSI 239
              +     E         +   +    +    G   P             +++     + 
Sbjct: 359  HKFNALKNEKGVVDFADLEHYCLEIMTDPAEDGELKPSFAAMEYRKQFKEVLVDEYQDTN 418

Query: 240  PATARLMSTV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH------- 291
                 ++  V A+      +    D       +            +  T S         
Sbjct: 419  LVQESILGLVTADEEALGNLFMVGDVKQSIYRFRLAEPNLFLSKYNRFTPSGAETGMKID 478

Query: 292  PQYSLAKLLDFLDIKREDVKRLGN--------VSNEMYGRSMVISKSFLPPDTSDMRNTD 343
               +    L+ L+      K++              +  +     +    P    + N  
Sbjct: 479  LSRNFRSRLEVLEGTNFLFKQIMGVNVGDIEYDHEALLVKGAAYPEDEKYPIEVAVINQS 538

Query: 344  ILENKIPNIQKCFSDVALIEADNERE--EAISIAIALRMSLDE---------------NK 386
              E  +         +   EAD E+   EA  +A  ++  + E                 
Sbjct: 539  DDEVPLAESASDLEGLVYDEADLEKSVIEARYMAQKVKELISEGKQVYDAKAGRHRKLQY 598

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
            +   ++      A  +  E  + GI I  +           +I+ SLL  I      + +
Sbjct: 599  RDIVILLRSMPWAPEIMEEFKKHGIPIYANLSSGYFEATEVAIMLSLLKVIDNPYQDIPL 658

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
             ++++ P+           R  +          +         +         +  + + 
Sbjct: 659  VSVLRSPIVGIDEEGLAEVRIHSKSGTYYEAVQRFVSKKQSEVNNEEAHEKLSRFLSSLT 718

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL--------TV 558
             W+++  +      V  +    +           K       ++ D  +           
Sbjct: 719  IWRTKARQGSLADLVWQLYRDTRFYDFAGGMPGGKQRQANLRALYDRARQYEETSFRGLF 778

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL------ 612
              L+ +     R           +    +    I +   ++   +    +  +       
Sbjct: 779  RFLRFIDRMRERGDDLGAARALSEQEDVVRMMTIHSSKGLEFPVVFVAGLSRQFNLMDLN 838

Query: 613  ---IDGETVKPKIEKSSTLFILGTLESRLLNFDT---------------LILGGLNEGVW 654
               +  +      +       +       L F                 + L    E ++
Sbjct: 839  QSYLLDKEFGFASKYLDPEKRISYPSLPQLAFKRKKRLETIAEEMRVLYVALTRAKEKLY 898

Query: 655  PKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDFE--MANGTRHLIYTRSLREN 706
               T K+       +     Q+D  L   E+    +  D+        R        R +
Sbjct: 899  LIGTVKDAEKSMKQWKEAAPQTDWLLPDYERAKALSFMDWVGPALVRHRDCTALNEGRSS 958

Query: 707  ------NIPTIASRWLQ------RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                   I    S W        + ++  G D  + +  +         + +   K+   
Sbjct: 959  VHSLPPEIHEHPSCWKLDVIPKSQFMLQEGEDAEEEIDWQENVKEGLPVEKESPEKEEVA 1018

Query: 755  KRPK---PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK-------LDFIPHFKKDPD 804
            +R      +P     P   S SEIK++        + R+++               K   
Sbjct: 1019 ERLSWRYSYPEAAVLPSKQSVSEIKRMFEISDEASSDRMVRKIQKPVFRRPKFLQSKQLT 1078

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
              + GT  H ++  +       N   +  L+  +       E     ID        KI 
Sbjct: 1079 PAEIGTAMHMVMQHISFS-ECPNEKSLQSLLDDLKQKELLTEEQAEAIDQN------KIL 1131

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------IHLTGFADRIDLLKSGF 912
              F     +   +  ++   +P  MA+                + + G  D I   + G 
Sbjct: 1132 AFFRSDTGQRVLNAHELHREVPFSMAVPVQEIDASASADESETVLVQGIIDLIFRDEHG- 1190

Query: 913  VDITDYKT 920
            + + DYKT
Sbjct: 1191 LVLLDYKT 1198


>gi|194363828|ref|YP_002026438.1| ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia
           R551-3]
 gi|194346632|gb|ACF49755.1| ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia
           R551-3]
          Length = 658

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 59/712 (8%), Positives = 159/712 (22%), Gaps = 126/712 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T ++ +E+R    +   ++      I +   +  +    +             
Sbjct: 50  RIAAITFTNKSAKEMRERVAKRLREQDADEVTICTFHALGLKFLQIEHAAV--------G 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R   +             +      +                +++ +++   +     
Sbjct: 102 LKRGFSIFDADDAAAQIKDLMYGAKPDDI---------------EDMKNLVSRAKNAGLS 146

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            E   A                     + +  RL   NA          ++   E+    
Sbjct: 147 PEQAMAAARSNREKEAAS-------VYERYQLRLTAFNAVDFDDLIRLPVQVLEENPDIA 199

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +   G +++     +  A  RL+  +A        +   D       W     ++  
Sbjct: 200 VAWRERIGYLLVDECQDTNDAQYRLLKQLAGDKGNFTCV--GDDDQSIYAWRGANPENLQ 257

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   + KL                            ++     +     
Sbjct: 258 QM-----GRDYPALEIIKL---------------------EQNYRCSNRVLRAANALIAN 291

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL---RMSLDENKKKSALITADRN 397
           N      K+ + Q     + + E  N   EA  +A  +     S         ++     
Sbjct: 292 NPHEHLKKLWSDQADGERIRVWECRNSEHEAEKVAAEIAFVAQSRKVPWSDFCILFRGNF 351

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++  +    I   ++ G             + L  +   +D  A    V+ P    
Sbjct: 352 QSRPLEKAMQLLRIPYHLTGGTMFLERQEVKDTLAWLRLLVNPDDDTAFMRAVQSP---- 407

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                          + +    +A               + E  
Sbjct: 408 ------------------------------KRDVGAGTLAKLAELAQEKDMPMAQAAEAI 437

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                L       +        +  +    +S  D  +        +     +      +
Sbjct: 438 GALQQLPPRAANSLARFTDILRDLRAQTRQISSGDMIRKVAKESGLLSELRQQAKEEASY 497

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +     +  L            A        +   +   +   K E  + + ++    S+
Sbjct: 498 QRRANNIEELAQWFEGGPRGATAAD------LAGQLALLSRSDKDEGGNQVRMMTMHASK 551

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-H 696
            L F  + + G           ++  L   +  D      E+        +      +  
Sbjct: 552 GLEFPYVFIVGC----------EDGVLPHQVSLDEGNLQEER-----RLLYVGITRAKIQ 596

Query: 697 LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           L  + S        ++    SR+ + +          +         +    
Sbjct: 597 LWMSYSKLTRKFGEHVRLKPSRFFEEIPAEEIQRDGADPVADAARKKERASA 648


>gi|148555593|ref|YP_001263175.1| double-strand break repair helicase AddA [Sphingomonas wittichii RW1]
 gi|148500783|gb|ABQ69037.1| Double-strand break repair helicase AddA [Sphingomonas wittichii RW1]
          Length = 1142

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 87/760 (11%), Positives = 181/760 (23%), Gaps = 86/760 (11%)

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTA 269
              + +      I++  +  +  A   ++  +A                +    D      
Sbjct: 388  VRYKLDQQTDHILVDEAQDTNAAQWAIVGRLAEEFFVGAGARGGAPRTIFTVGDFKQAIF 447

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             +                            L      R     L  V   +         
Sbjct: 448  GFQGTDPVEFERARLGFAIKALQVDREFLDLSLDRSFRSAPAVLELVDRLIADLGHEEMG 507

Query: 330  SFLPPDTSDMRNTDILE-----NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
             F P +     +                            D  R  A  +A  +R  +DE
Sbjct: 508  LFTPAERHAAHHAMPGRVTLWKPLSIEEAMDDDGEEGFIDDATRAYAGRLARQVRSWIDE 567

Query: 385  ------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                         +    L+    +LA  +   L    + +     + L+  L    L +
Sbjct: 568  RLWLGSKKRPIRPEDILILVRRRADLASLIVARLHAEKVPVAGVDRLRLTAPLVVKDLLA 627

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
             +    +  D +++A L+  PL  +   E Y         LV     K   D       +
Sbjct: 628  AVRFAVQREDDLSLAALLVSPLFGWSQEELYRVGFGRRGPLVDAVRAKGDADTNAALDAI 687

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            L R         + H  +   +  ++L   L D     I  L+        T        
Sbjct: 688  LARADFTTPYRFLEHLLTGPLDGRRKLLRRLGDEARDPIDELLGAALQFEGT-------- 739

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                              +    WF+     ++   S  ++    +  +  + ++    +
Sbjct: 740  -------------ATATLQRFLDWFDRGDVEITRDPSAPLDAVRVMTVHGSKGLEAPLVI 786

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            +   T  P +     L                          P    +   +   ++ D 
Sbjct: 787  LADATADPDLSPDRRLD---------------WAIEEGAEPVPVLRPRKAEMVEALRKDA 831

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIY---TRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
                  +        +      +  +    T  +R   +P  +S +      + G     
Sbjct: 832  EALAKRERQEHWRLLYVALTRAQEHLVIGGTLGVRARGVPPASSWYQAIDQAMAGLGCPP 891

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                       +   +  T      +  +  P L         +  +     P A  +  
Sbjct: 892  VEDPLWVEARHYHGSVAATGTTAPARPRRGAPVLAEPGWLRRPAPPEARPPRPLAPSSLG 951

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII---DSHFEKE 846
            +  +   P          RGTL H +   L     ++        +       ++     
Sbjct: 952  LDDVPDPPPSAALRAAARRGTLLHALFERLPAIDPDRRRDAALRWLLGSAGVEEAGIAGA 1011

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
                   +I    F  I  +    E  + + +    V               +G  DR+ 
Sbjct: 1012 LADDACRVIADPRFAAIFGADALAEAPVAAVVAGEVV---------------SGTVDRLL 1056

Query: 907  LLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAAL 944
            +     + + D+KTG                Q+S  AAAL
Sbjct: 1057 VAAD-RILVVDFKTGRRAPADLAAVPDHHLRQMSAYAAAL 1095


>gi|78183791|ref|YP_376225.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9902]
 gi|78168085|gb|ABB25182.1| ATP-dependent DNA helicase, Rep family [Synechococcus sp. CC9902]
          Length = 798

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 74/772 (9%), Positives = 188/772 (24%), Gaps = 119/772 (15%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF----IEITGKKSTILPIIKSL 81
           L   +         +P     +     T +A +E++        +   +     P   +L
Sbjct: 36  LTHRIAHLIGEHGADP---GQILAVTFTNKAAREMKERLELLLAQRLAQSQFGQP-WSTL 91

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             V + +  + +         +     L   AR++    +K  D   D    +       
Sbjct: 92  PPVQQRQLRSRIYREITKELWIGTFHALF--ARMLRFDIDKFRD--PDGLTWTKQFSIYD 147

Query: 142 PANAIWLAKNLAD-----------------IIDIIETEEKKWEDLHALKNEKYGMWWLLA 184
            A+A  L K +                    I   + +    + L A    +        
Sbjct: 148 EADAQSLVKEIVTQELQMDPKRFEPKKVRWAISNAKNQGWLPDQLEANAEGQR------- 200

Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSI 239
                   + + + L   NA       +  +       +           +++     + 
Sbjct: 201 GKLTADVYRRYRKALAANNALDFDDLLLLPVQLLQQNEQVRRYWHRRFCHVLVDEYQDTN 260

Query: 240 PATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
                L+  +          +  +G  V    D       +             +     
Sbjct: 261 RTQYDLIKLLVTDGKEPQAYDDWSGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGDQA 320

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
               +  + +  L+        +   +N +   +                 ++ ++  + 
Sbjct: 321 PDDAT--RTMVKLEENYRSTATILAAANALISNN-----------------SERIDKVLR 361

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLEL 406
             +     + L   D+E  EA ++   LRM    N        A++      +R ++  L
Sbjct: 362 PTRGEGELITLTRCDDEIAEAEAVVHRLRMMEAANPDLSWGDMAVLYRTNAQSRAMEESL 421

Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
            R+GI   +  G+          L + L  +    D +++  ++  P             
Sbjct: 422 VRWGIPYIVVGGLRFYDRREIKDLLAYLRLLVNPADTVSLLRVINVP------------- 468

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                     +       I  L            +          L     +  +   + 
Sbjct: 469 ----------KRGIGKTTIQRLTDAANQLGIPLWDVVSDAEAVRSLGGRSAKGLLQFCEL 518

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           +          KT   +   +  +    + +    + +              +E    + 
Sbjct: 519 VN-------DLKTQVQTAAPSELLQQVMEKSGYVSELITEGTDEAEERRRNLQELVNAAL 571

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            + +        + +       +           K   +  + ++    S+ L F  + L
Sbjct: 572 QYQE--------ENDDGNLEGFLASAALSSDADNKDTAADRVTLMTLHSSKGLEFPVVCL 623

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
            GL +G++P   + +   S   +  L      +   +        +          +RE 
Sbjct: 624 VGLEQGLFPSYRSLDDPASLEEERRLCYVGITRAKERLF-----LSHASERRLWGGMREA 678

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
               + S +L  L                        +L    +      P 
Sbjct: 679 ---AVPSVFLSELPEALVQGDLPQTGGAALRRERRLDRLTRVDRGQPSSAPA 727


>gi|326693832|ref|ZP_08230837.1| ATP-dependent DNA helicase PcrA [Leuconostoc argentinum KCTC 3773]
          Length = 748

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 74/727 (10%), Positives = 184/727 (25%), Gaps = 116/727 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A +E+R                   +G ++ E    D+ +S      V  
Sbjct: 56  RILAITFTNKAAKEMRER-----------------IGALLSEDVARDIWVSTFHALAVRI 98

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  E   L   +        + L       L +         + +  +I   + +  +
Sbjct: 99  LRRDGENIGLSRNFTIIDTSAQRTLMKRVINDLNLDTNQYEP--RTVLGMISNAKNDMLR 156

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AE 220
            +D     +  +        + +      +   L    +       +  +          
Sbjct: 157 PKDYAQQADNAF-------QETVAEIYAAYQAELKRAQSVDFDDLIMLTIDLFQSSSDVL 209

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     + +     +  A   +++ +A       V+   D       W      +  
Sbjct: 210 ARYQNQFDYLHVDEYQDTNDAQYTIVNMLAQRSQNLAVV--GDADQSIYGWRGANMNNIL 267

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                               +  +              +     
Sbjct: 268 NFEKDYPN--------------------------AQTILLEQNYRSTQNILDAANAVINN 301

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISI---AIALRMSLDENKKKSALITADRN 397
           N + L   +         +    A +E +EA  I      +R          A++     
Sbjct: 302 NNERLPKNLWTQNGQGDKITYYRAQSEHDEANFILANIQKMRAEKQMAYSDFAVLYRTNA 361

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R V+  L +  +   +  G           + + +  +   ND  A   +V  P    
Sbjct: 362 QSRNVEEALVKANMPYTMVGGHKFYERKEILDIMAYMQLVTNPNDNAAFERIVNEP---- 417

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                         L +  + R+    N  +V +  +  S E  
Sbjct: 418 ---------------------------KRGLGATSITRLRELANRLNVSYMTAIESIELA 450

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL-DEHRKLPNLW 576
                           ++     +        +++         Q +   ++      L 
Sbjct: 451 PAISTKATSKFLEFAEMMHELRQQAEFLNVTELAEIVMTRSGYRQMLAEKNDPDSQARLE 510

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             EE  +++  F    +       + +   D +        +    E    + ++    +
Sbjct: 511 NLEEFLSVTKEFDAKYQPDDPEAIDPM--TDFLGTTALMSDLDDFEEGDGAVTLMTLHAA 568

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-R 695
           + L F  + L G+ EG++P + A              L   ++   +    +       +
Sbjct: 569 KGLEFPVVFLVGMEEGIFPLSRA--------------LMAEDQLEEERRLAYVGITRAMK 614

Query: 696 HLIYTRSLRE----NNIPTIASRWLQRL-LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            L  T +             ASR++  +   L  T++  N +   +  L + RK  +   
Sbjct: 615 KLFLTNAFSRLLYGRTQSNEASRFINEISPALLETEYGQNTRVTPRRDLPFDRKNQHAQA 674

Query: 751 QPHYKRP 757
             +   P
Sbjct: 675 TTYRATP 681


>gi|304390836|ref|ZP_07372788.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
 gi|304325719|gb|EFL92965.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
          Length = 1191

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 91/1007 (9%), Positives = 230/1007 (22%), Gaps = 138/1007 (13%)

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +++  R   +  ++  W   L    +    E+ +++ +S AN      +L D+ ++ +T 
Sbjct: 176  ITDAARYQIMTDVVQSWTGALGTKREGENAENLVNILLSLANDTN--SHLVDLAEMKQTY 233

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLK-------------IASKYWTERLVELNASSPVG 209
                     L++ +       A   L                 + + ER  EL  +    
Sbjct: 234  RSYLAAAKRLQDAEGADLNSTALRNLDTIIDTMEFGCNATNVIQAFNERKRELLMADFSD 293

Query: 210  YQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                 +R   +        +     + +     +  A  R ++ +        V    D 
Sbjct: 294  QTRETVRLVEQLSAVGESQRERFQLVFLDEFQDTSVAQMRFLAGIFRDCA---VTAVGDP 350

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD-------IKREDVKRLGNVS 317
            +     W   +  S     S    +   Q     L            +       L    
Sbjct: 351  NQAIYGWRGASAASMEDFGSIF-CTDPRQLLTRTLSTSWRNDAVILTVSNRISAELAGAP 409

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN---EREEAISI 374
                 R++  ++      +  ++        I    +  +D+   +A        +A  +
Sbjct: 410  AVAAERNIPRNQDVQSAISKPLQARPGANPGIVYGIQTLTDLQQSQAVVNFFRLWQAQRV 469

Query: 375  AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
             +       E    +A++   +N    +   L R GI         +       ++ + L
Sbjct: 470  KLQSEGVPAEKLPTAAVLCRAKNAIPGLVESLRRAGIPYQTRGMQGILEDPGVRLVRAAL 529

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                      ++  L+          +              +              L   
Sbjct: 530  EITDNPEKSASLLLLLDRYRLGLSDLQAVGQNRHRFTPYQIVMEGGAQVSTEAQTRLEKL 589

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            R    +   + P     +        + L        +P       +             
Sbjct: 590  RGILTELKDNAPFATPLVLARLAHRLLDLDIEQQLPGSPCQAGAYVEFLNLVRDFGRTPG 649

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                  L  +   E  +      + E    +      +     ++ + +   ++      
Sbjct: 650  ATLSGFLNWLSAGEDEEASFADLDFEVDNAAVQII-TMHAAKGLEWDWVAVPNL------ 702

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                     +         +    L  D   L  L        TA      +    +   
Sbjct: 703  -NKSTFPSVRGEIWVTQRDVLPYPLRSDRDHLPELELKTQTLLTATGRVSKKKGLLETFK 761

Query: 675  KTAEKY--IGQAAHDFEMANGTRHLIY---TRSLRENNIPTIASRWLQRLLV-------- 721
            + AE Y    ++   +      +  +        R+       S++              
Sbjct: 762  EDAEHYALREESRLAYVAFTRAKSRLLLGHCWFERQTKKGRPPSQFFLVEQDPQQHIFSD 821

Query: 722  --------------------------LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                                       GG     NL                  + P  +
Sbjct: 822  ADSLASSGGADIIQPDSSTVPVVESSEGGAVGVANLLTPFNAETFAQEVARLGIETPDVE 881

Query: 756  RPKPF----------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
             P             P  +        +         +A   +          F     +
Sbjct: 882  WPDTVVTSIPDKIENPNQDRFDAGIWPALPLTQTRLDFAQAVQVTEAALDSGKFSGGISQ 941

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII--------WR 857
                     +   L + +    T ++   +     +H  +++    +  +          
Sbjct: 942  DADEETERRLSQLLHQPQTRLGTGDLLGRISATGMAHLAQDSEGYLLQRLRPLPQQPSVA 1001

Query: 858  HLFHKISHSFLEHEEKI----------QSSIEKIFVN----------------------I 885
                   H+++  + +           +                               +
Sbjct: 1002 ARLGTYMHAWIASQLENEDTFIFDAGTEDGFTPEQRELLHKWQQRYEDLELLRRLRGPQV 1061

Query: 886  PAKMAI---ESIGIHLTGFADR-IDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
                 +   E+ G  +    D   + +++G + I D+KTG  P  E   + +  QL +  
Sbjct: 1062 EFDGELYVAEAGGAVIPLRIDAQFEEVQTGKIWIIDWKTGRRPTPENYAQWLH-QLGIYR 1120

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                     +     +    YI L +      +   +       ++E
Sbjct: 1121 L-YWLQEHPETPAEDIICA-YIFLNEDNPAKQLLTLQDILDELGIAE 1165


>gi|289667695|ref|ZP_06488770.1| exodeoxyribonuclease V gamma chain [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 1137

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 105/963 (10%), Positives = 223/963 (23%), Gaps = 129/963 (13%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
            E  R  P  PLL   V + +P     + L+S      G  + +     + G+ V     
Sbjct: 26  QELRRPVPGQPLLQPEV-VLIPQVAMRRWLQSTLAAEHGVAANL--EFLTPGEFVARALE 82

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
            +L  + +     +   RL                    L P +             LA 
Sbjct: 83  RNLAAADDDLDMATTQWRL-------YAALQTDLGSDAALAPLAGYLADGDALKPWALAG 135

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            L  + +  +   + W  L                  +                      
Sbjct: 136 ELGSVFEKYQAWRRDW-LLRWEGGADPDDPQARLWRGIA------------SGRQYRARR 182

Query: 211 QIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
               +   A       +G    +         P   R+++T A        LP       
Sbjct: 183 IGQYLDRYARADGPVPQGLPQRLFAFAILNISPDVLRVLATQARVGTLHFYLPTPTQGYW 242

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
             +      +  +            Q     LL        D   L      ++  + + 
Sbjct: 243 GDLQTLWQRRREDGAVQLFAE----QVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEIA 298

Query: 328 SKSFLPPDTSD--------------------MRNTDILENKIPNIQKCFSDVALIEADNE 367
           + +                             R    +   +P +      + +      
Sbjct: 299 AYADPLDSGRRTLADGGLGDSLLRRMQSDLFHRRAPPVPALLPAVNLHDPSLQVHACHTR 358

Query: 368 REEAISIAIALRMSLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDI 415
             E   +   LR  LD+         ++ A+++ + +        +         +   +
Sbjct: 359 LRELQVLHDQLRALLDDTRFDPPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYAL 418

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY--------LSRA 467
           +   PL++   + +  +LL           I  L+                        A
Sbjct: 419 ADASPLASEPLAEVFLTLLGLPIARFGLHEILDLLASAPIAEAAGLDEAGLERLRSWLHA 478

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
             A   +     +      D        +                               
Sbjct: 479 AGARWGLDAAHRRQHQAPGDDAYTWRFALDRLLLGHASGADVDIDGVAPWPQLEGSALAA 538

Query: 528 LQCITPLVTYKTNKNSTCGNL-SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           L  +  L+       +      +  +W +  +  L+ +              +  + L  
Sbjct: 539 LDTLLRLLRVLERHQALLAEAMTPVEWRERLLGLLEALIPTTPTAPRAQRALDRLRALID 598

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            F++             E +      + GE+       +  +     +  RLL F  + L
Sbjct: 599 QFARDAVRAEYAGKVPAEVVRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRVICL 658

Query: 647 GGLNEGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
            G+N+G +P+             L    +   +  T E         F  A    +L Y 
Sbjct: 659 LGMNDGDFPRRDPAAGLNRLTAELGTDRRRHGDRSTREDDRFLFLQLFASAQEVFYLSYL 718

Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFD------------------------------- 729
            +   +      S  +  LL                                        
Sbjct: 719 GADARDGSVREPSVLVSELLASAAQYHVANNALDTLVVRHPLQPFAAAAFGALGDESGDG 778

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS----EIKQLINDPYAV 785
              +R      W   +D    Q     P     L A       S    E+++L  DP   
Sbjct: 779 ADPRRFSYRRQWRPAVDSLVGQRQPLAPWVAGALPADDVAVPASVSIDELRRLFADPAGQ 838

Query: 786 YARRILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
           + R  L +       +D D        RG   + +  ++ +  +  +T  +   ++    
Sbjct: 839 FLRHRLGMRLPDPAGEDSDLEPLLAPTRGLDQYGLQQQVFEAALAGDTERLYERLRA--- 895

Query: 841 SHFEKENLPPHIDIIWR-HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
                        +  R       + +F +   +  +   +        + ++   I L 
Sbjct: 896 RALLPSGPLGRRQLDERVAQLRPYADAFRQWRGESPAESRR--------LQVQIGDIELH 947

Query: 900 GFA 902
           G  
Sbjct: 948 GRV 950


>gi|262369962|ref|ZP_06063289.1| ATP-dependent DNA helicase pcrA [Acinetobacter johnsonii SH046]
 gi|262315001|gb|EEY96041.1| ATP-dependent DNA helicase pcrA [Acinetobacter johnsonii SH046]
          Length = 662

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 49/414 (11%), Positives = 107/414 (25%), Gaps = 60/414 (14%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            + I   T+R+  E+ +      G+++  L    +                      + +
Sbjct: 55  QIQILTFTRRSASEIVARVELALGEQAKGL-RASTFHTFCMYLLRRVPKAFGLEQFSIID 113

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
               L + RLI    +K             L  P    +    A+N              
Sbjct: 114 RDDQLMMFRLIRGKDDKKNPNQ--------LPKPQELCDLYSFARNTRQ----------- 154

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
              L     +++        D +    K +  R    +          +  A  +     
Sbjct: 155 --KLSDALEKQHPEHL-AFKDQIAEIMKEYETRKRARSFLDYDDILAIVASALDQSDGLA 211

Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    +++     + P    L+  +    +   +    D       +     ++ +
Sbjct: 212 DYVASLCKHMLVDEMQDTNPLQWALLEPL---KDKVSLFCVGDDAQSIYGFRGADFENIH 268

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                              +  L+      + + ++SN +  +S +     L     +  
Sbjct: 269 HFKDRVP---------NAQVFKLEQNYRSTQEILDLSNWLLDQSEIQYNKRLDAHRGEGV 319

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA---LITADRN 397
                               +    NE +EA  IAI ++        K +   ++     
Sbjct: 320 KPC-----------------MHIFPNEFDEAKWIAIDIKERHYLQGSKWSDHMVLVRSSF 362

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            AR ++       +      G+ L  T H   L SLL  I    D +A    + 
Sbjct: 363 AARHIEAACIAANVPYRFIGGMKLLETAHVKDLLSLLRVIANPLDDIAWMRFLT 416


>gi|108800103|ref|YP_640300.1| RecB family exonuclease [Mycobacterium sp. MCS]
 gi|119869231|ref|YP_939183.1| RecB family exonuclease [Mycobacterium sp. KMS]
 gi|126435728|ref|YP_001071419.1| RecB family exonuclease [Mycobacterium sp. JLS]
 gi|108770522|gb|ABG09244.1| putative RecB family exonuclease [Mycobacterium sp. MCS]
 gi|119695320|gb|ABL92393.1| putative RecB family exonuclease [Mycobacterium sp. KMS]
 gi|126235528|gb|ABN98928.1| putative RecB family exonuclease [Mycobacterium sp. JLS]
          Length = 277

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
           +    S S        P     R I +L              RG++ H  + +L      
Sbjct: 9   RRPALSPSRAADFKQCPLLYRFRAIDRLPEPQS-----TAQLRGSVVHAALEQLYALPAA 63

Query: 826 KNTPEINHLMKQIIDSHF------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
              P+    +                E++ P +          +   +  +  +  +  +
Sbjct: 64  DRGPDTALTLVAPAWDRVIAERPEAAEDIEPAVREALLGEARALLAGY--YRLEDPTRFD 121

Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQL 937
                   ++ ++   + L GF DRID+  +G + + DYKTG  P +    A+     Q+
Sbjct: 122 PQCCEQHVEVELDDGTL-LRGFVDRIDVAPTGELRVVDYKTGKAPPEARALAEAKALFQM 180

Query: 938 SLEAAALKAG 947
              A AL   
Sbjct: 181 KFYAVALLRS 190


>gi|315653555|ref|ZP_07906475.1| ATP-dependent exonuclease subunit B [Lactobacillus iners ATCC
           55195]
 gi|315488917|gb|EFU78559.1| ATP-dependent exonuclease subunit B [Lactobacillus iners ATCC
           55195]
          Length = 1157

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 103/891 (11%), Positives = 238/891 (26%), Gaps = 135/891 (15%)

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
           DL+++ +E            L+I    + + L +    +       +++   +  +    
Sbjct: 138 DLNSISHEAVTEETSRKLHDLQIIYDEFIQMLGDH--FTTKDGIQLILKTVMDKKLSIDN 195

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
                 G +    +   ++  +A   N ++                  +   N       
Sbjct: 196 MNFFFCGFSYFSLSELNIVKIIAKKANLSVFAF------------KTKDAQINDKVMEGD 243

Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
           Y    Q ++AKL++F ++            N        ++  +               N
Sbjct: 244 YDYIVQSTIAKLINFFNVNSLKFSTKEYGYNINLNNKEKLNAIWT-------------GN 290

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL 404
                    + V LI+AD+   E   +A  +   +       K   ++  + +       
Sbjct: 291 IPQQGLDLTNYVHLIKADSRYAEINFVAQTIYQQVVFNHYRYKDFLVLAPNLSEYETYLT 350

Query: 405 -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPE 461
              ++  I++       +       ++ ++ +          I T++K  L   ++   +
Sbjct: 351 PIFSQNNISMFNDLQKQMKFHPLVVMIENIADINDMGFKTQDIITILKTRLLIPEWYTDD 410

Query: 462 KYLSRAKNALELVALRGNKNSYDI----MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                  + LE   L  N N         D     +  +              +   E+ 
Sbjct: 411 IKFIADVDLLENFVLAHNINHQLWKKSFYDFVDNNISHLDQINEKVEKLDKLRQFIIENI 470

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +  +  +  +      +  +         N  +  W        +N  ++          
Sbjct: 471 DNLITQLHKLTNVQEAVTLFWNFLLKNKINKKLEKW--------RNTAINNGDLQLAQQP 522

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           E+    L+ L    +      + N   + DI+                  + +      +
Sbjct: 523 EQIWALLNKLLKDYVLIAE--EFNTENFFDILISGFSEANFSQIPSVLDAVTVSEIGMVQ 580

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY-----------IGQAAH 686
             +F  + + G      PK   K  FL+    ++LN   A++            + Q   
Sbjct: 581 NNSFKQVFIIGAVNNSLPKIQNKPGFLNIENINELNNSIADEQQYIENNQEVNNLDQTYQ 640

Query: 687 DFEMANGTRH-LIYTRSL-RENNIPTIASRWLQRLLV--LGGTDFFDNLKKRGQCYLDW- 741
             ++ +     +  +  +   +N    AS + Q +            +L +  Q  L + 
Sbjct: 641 FGDVLSLASDGVYISYPIINVSNEKMEASIFYQDIKNTLNLTEYVQHDLPENQQQLLSFI 700

Query: 742 -------------------------------TRKLDYTTKQ-------PHYKRPKPFPPL 763
                                             L     Q       P    P     L
Sbjct: 701 TTPQASLGYIVYLKNKTNDDISNLLALTPSNQALLFDNVIQASSFKNKPVNLTPALAQEL 760

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                  S S+++    + Y  +    L L     F+ +      G  +H  +  L+K  
Sbjct: 761 YGNNINISISQLETFYANSYEYFLTYGLHLHKR--FENELTNIQSGNYYHETMDRLVKYL 818

Query: 824 INKNTPEIN------HLMKQIIDSHFE-----KENLPPHIDIIWRHLFHKISHSFLE--H 870
                           ++   I    +     +E L    +        + +   +   H
Sbjct: 819 KQHKLDFAELTKDKISVILANIQDELKTKGSYRELLGDPFNEFLFKCLDRTTKKVVNYWH 878

Query: 871 EEKIQSSIEKIFVNIPAKMA--IESIG------------IHLTGFADRIDLLK--SGFVD 914
           +   Q+    ++  +       I  +             I L G  DR+DLLK     + 
Sbjct: 879 QNMFQTKFCPLYSELSFGNKEYIAGLSYQFIDKQQKTHHISLRGKIDRVDLLKDCDNEIL 938

Query: 915 -ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG-SFSQIDCRKVANLFY 962
            + DYK+          +  I  Q+    + L+        +   +   FY
Sbjct: 939 QLIDYKSSAKKFDFNLFKNGISMQMLSYLSVLQDNSHIFSTNPVNIFGAFY 989


>gi|169628149|ref|YP_001701798.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
           ATCC 19977]
 gi|169240116|emb|CAM61144.1| Putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus]
          Length = 807

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 83/723 (11%), Positives = 182/723 (25%), Gaps = 71/723 (9%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK--STILPIIKS 80
            A+L   +        ++P     +     T +A  E+R     I   +  S     + +
Sbjct: 53  TAVLTRRIAYLLAARDVSP---GQILAITFTNKAAAEMRERVGRIVANRVQSMW---VST 106

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
                         L   LN   S         RL+ +    +   IK   P        
Sbjct: 107 FHSSCVRILRNQASLLPGLNSNFSIYDSDDS-RRLLQMIGRDMGLDIKRYSPRL------ 159

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWE-DLHALKNEKYGMWWLLAADFL-KIASKYWTER 198
                      LA  I  ++ E    E  +  L               +       +  R
Sbjct: 160 -----------LATAISNLKNELISPEQAVANLTAGGQDGELRGDLPQIVADVYGEYQRR 208

Query: 199 LVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
           L   NA          +             +     I++     +  A   L+  +    
Sbjct: 209 LRAANALDFDDLIGETVAVLQQFPQIAQFYRRKFRHILVDEYQDTNHAQYVLVRELV--- 265

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
            GA V   +D   P                     +    Y+        +I+  +    
Sbjct: 266 -GAHVDRTVDPDGPEPA-----------ELCVVGDADQSIYAFRGATIR-NIEEFERDYP 312

Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
              +  +              ++   +N +  E ++         +    ADNE +EA  
Sbjct: 313 NAKTILLEQNYRSTQNILSAANSVIAKNANRREKRLWTDSGEGELIVGYVADNEHDEASF 372

Query: 374 IAIALR---MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
           IA  +       D N    A+     N +R ++    R GI   +  G+          +
Sbjct: 373 IAREIDGLFDRSDANYGDIAVFYRTNNNSRSLEEIFIRTGIPYKVVGGVRFYERKEIRDI 432

Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            + L  +    D +++  ++  P    G   +           +             +  
Sbjct: 433 VAYLRVLTNPGDAVSLRRILNTPRRGIGDRAEACVAVHAETNGIGFGEALADAAAGKVAM 492

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
           L             +          D   A   +  I   +  ++ +   +     +   
Sbjct: 493 LNSRSEKAIAAFMDMLDQIRVTLRTDDPGA---LPDIGDVVEAVLNHTGYRYELENSSDP 549

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
            +  +     L N+                 +          E       +   +++ ++
Sbjct: 550 QELAR-----LDNLNELVSVAHEFSADAANAQAAGEDVPGDDEDVGAPPGSLEAFLERVS 604

Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
            + D + +      +  + ++    ++ L F  + + G  +G++P   A    +    + 
Sbjct: 605 LVADADEL--PESSAGVVTMMTLHTAKGLEFPVVFVTGWEDGMFPHMRALGDPVELAEER 662

Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
            L      +   +       A         RS     +    SR+LQ +          +
Sbjct: 663 RLAYVGITR--ARQRLYLSRAK-------VRSSWGQPMMNPESRFLQEIPQELIDWRRTD 713

Query: 731 LKK 733
              
Sbjct: 714 PLP 716


>gi|88811284|ref|ZP_01126540.1| DNA-dependent ATPase I and helicase II [Nitrococcus mobilis Nb-231]
 gi|88791823|gb|EAR22934.1| DNA-dependent ATPase I and helicase II [Nitrococcus mobilis Nb-231]
          Length = 736

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 82/778 (10%), Positives = 178/778 (22%), Gaps = 120/778 (15%)

Query: 10  TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLA-SVTIYVPTKRAIQELRSEFIEIT 68
           T             +     L     +        A S+     T +A  E+R     + 
Sbjct: 30  TAPCGRTLVLAGAGSGKTRVLTHRAAWLLQAEEASAYSILAVTFTNKAAAEMRGRIAGLV 89

Query: 69  GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK 128
           G  +  +  I +   +           +             +  A        +    ++
Sbjct: 90  GIAAGGM-WIGTFHGLAHRLLRLHWREAG------LPQHFQILDAEDQRRLIRRTLRNLE 142

Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188
                 P              + +   I+  + E ++ E L               ++ +
Sbjct: 143 IDESRWPP-------------RQIQGFINARKDEGRRPEALEPHD---------AYSEQM 180

Query: 189 KIASKYWTERLVELN-ASSPVGYQIA---LMRAEAEHLM--KGTKGPIIIAGSTGSIPAT 242
           +   + + E               +    L+R +   L   +     I++     +    
Sbjct: 181 RQLYRAYEEACRAGGGLVDFAELLLRCYELLRHQPALLEHYRRRFRHILVDEFQDTNRIQ 240

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
              +  +A   +   V    D       W     ++             P   + +L   
Sbjct: 241 YEWLRLLAGSESD--VFIVGDDDQSIYGWRGAQVENMQRL-----QRDEPSTRVLRLEQN 293

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
               R  +     +      R                     L   +         +A+ 
Sbjct: 294 YRSTRTILAAANALIARNSRR---------------------LGKHLWTEGAAGEPIAVY 332

Query: 363 EADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGI 419
            A +E++EA  +   +R  ++         A++      +R  +  L    I   +  G+
Sbjct: 333 AAFSEQDEARFVVERIRSLIESEGYARSDCAILYRSNAQSRAFEETLFGREIPYRVYGGL 392

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
                       + L  +   ND  +   ++  P    G       R++        R  
Sbjct: 393 RFFERAEIKDALAYLRLLVNRNDDASFERVINTPPRGIGVKTLDALRSQAR-----QRQT 447

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                  +L           +  T       RLS    E A+     ++     L  +  
Sbjct: 448 SLWQAAGELLRAGALSGRAARATTAFIELIDRLSGPLAEPALAARIEVVLAQCGLHEHYA 507

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              S  G   + +  +L           E                               
Sbjct: 508 KDRSERGLDRLENLDELISAARTFEQAREPTDDE-------------------------- 541

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             A      +             E+   + ++    ++ L F  + L GL EG++P    
Sbjct: 542 --ADSLTAFLAHAALEAGEVQAGEQDDGVQLMTLHSAKGLEFPVVFLVGLEEGLFP---- 595

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT-----RSLRENNIPTIASR 714
                       + L    +   +    +      R  +       R L   +    ASR
Sbjct: 596 ----------HRMALDEPGRLEEERRLCYVGITRARQRLLLSFAERRRLHGQDHYGTASR 645

Query: 715 WLQRLLVLG-GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
           +L  L               R Q  +     +            +       +    S
Sbjct: 646 FLLELPTELVQEVRARFSVTRPQTKVHAVEPMVTADTAAFSLGQRVRHATFGEGIVLS 703


>gi|116494556|ref|YP_806290.1| superfamily I DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|116104706|gb|ABJ69848.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei ATCC 334]
          Length = 751

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 74/624 (11%), Positives = 168/624 (26%), Gaps = 97/624 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVS 104
           ++     T +A +E+R    ++   +      + +   +       D+  L YN    ++
Sbjct: 56  NILAITFTNKAAREMRERVGKLVDAEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIA 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +    L L + I      L D   D     P              K++   I   + E  
Sbjct: 116 DPAEQLTLVKHI------LADFNLDPKRYDP--------------KSILGAISSAKNELV 155

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
             +       +    +  + A         + +RL    A       +  +    +    
Sbjct: 156 DPQ--TYANEQANSPFTKVVAQ----VYAEYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209

Query: 225 GT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I +     +  A  +L+  +A   +   V+   D       W     ++ 
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYQLVHMLAEGYHNLCVV--GDADQSIYGWRGANMQNI 267

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      +P+  +  L       +  +    +V      R                
Sbjct: 268 LDFK-----QDYPKAQVILLEQNYRSTKTILSAANDVIQNNQNRQAK------------- 309

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADR 396
                    +    +    +    A +E +EAI +   +   + +N +     A++    
Sbjct: 310 --------TLWTENREGDKITYYRAQSETDEAIFVIRRIEAEIADNHRKYGDFAILYRTN 361

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++    +  I   +  G             +    +    D M+   +V  P   
Sbjct: 362 AQSRAIEEAFVKSNIPYKMVGGHKFYDRKEIRDALAYFRLVVNPEDDMSFNRIVNEPKRG 421

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G        A                             A + + + +    +      
Sbjct: 422 IGNTSVEKLEA----------------------------FANEHDWSLLEAAANAELSPI 453

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
              A   +    + I  L T + + N T    +I + +    T      L+   ++ NL 
Sbjct: 454 AGKARGQLAKFGKMIQQLGTRRKDLNVTKMMQAILEDSGYLSTLRAAHNLEADTRIENLE 513

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                        +     S I      ++D +  L          E +  + ++    +
Sbjct: 514 ELLSVTQGFDSRYQPENEDSDI------FVDFLAELALLSDQDDVEEDAQEVTLMTLHAA 567

Query: 637 RLLNFDTLILGGLNEGVWPKNTAK 660
           + L F  + L G+ EG++P + A 
Sbjct: 568 KGLEFPVVFLVGMEEGLFPLSRAS 591


>gi|203463426|ref|YP_002224009.1| gp68 [Mycobacterium phage Solon]
 gi|197312613|gb|ACH62967.1| gp68 [Mycobacterium phage Solon]
          Length = 274

 Score = 78.4 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 80/290 (27%), Gaps = 57/290 (19%)

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
               + +  S S++ Q    P++    R  ++   P          +GT  H +  + +  
Sbjct: 11   YTYEKKPRSVSQLSQFDKCPFSWKLARHERVWKRPAAW-----LQQGTGVHAVAEKYMLS 65

Query: 823  RINKNTPEINHLMK----------QIIDSHFEKENLP---------PHIDIIW---RHLF 860
            ++  +        +                                  I+  W       
Sbjct: 66   KLAGSPLTREECYEIFKAEYADGINEATEETPNLGWWFSSGPYRGADDIERRWGIGLQQV 125

Query: 861  HKISHSFLEH---EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
             K       H   E           + +  +  ++  GI + G+ D + +L  G V + D
Sbjct: 126  DKTLDWIDNHQSLEVWHTPDGTP-GIELAIEFELD--GIEIRGYIDAVLVL-DGEVLVVD 181

Query: 918  YKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
            +KTG  P         D QL++ A AL      Q+   ++    Y   K           
Sbjct: 182  WKTGLKP-------GDDFQLAVYALAL-----KQLYGVEITRGVYFMAKTGKPTYPYDLT 229

Query: 978  KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI---QSEY 1024
                      EK      E+   L+ G+  F      S          EY
Sbjct: 230  DWTR------EKVSARFHEMERKLEAGD--FTPKPGASCARCDVALSCEY 271


>gi|149923566|ref|ZP_01911966.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
 gi|149815585|gb|EDM75117.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
          Length = 693

 Score = 78.4 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 76/719 (10%), Positives = 181/719 (25%), Gaps = 100/719 (13%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
           +         P     +     T +A +E+R    ++ G+      ++ +   +      
Sbjct: 39  IARLMELGTQPE---EIVALSFTNKAAEEMRERLAKMVGRAKAKALVLGTFHSLGARMMR 95

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
            D    + + P    + +  ++  ++     +             ++  +   +      
Sbjct: 96  EDPK-GFEVPPRFQILDQ-GDVNGIVRALLREYGFHGGSAKKRWDINAIVQRISLWKN-- 151

Query: 151 NLADIIDIIET-EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
              D +   E   +    D   +                    + + +RL  L A     
Sbjct: 152 ---DFLSAAEVKRKVSSNDYDEIA---------------AELYEAYDDRLRALAAVDFDD 193

Query: 210 YQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
               +          +   +     +++     +  A  +++  +        V+   D 
Sbjct: 194 LVCRIALMLQDNPLTKKRWRRRFRYLLVDEYQDTNTAQFQMLLELLGEDQNLCVV--GDD 251

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 W      +               Y     +  L+        +   +N +   +
Sbjct: 252 DQAIYGWRGAKVANILGFD---------LYFRNAKVIKLEANYRSRPPITTCANAVIAHN 302

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
                            T   + ++   +     V L+   +   EA  +A  +   + E
Sbjct: 303 -----------------TSRHDKELVPQRTGGEKVQLVVTRDGPSEAKWVADKIYQLIHE 345

Query: 385 NK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                K  A++      AR V+  L   G+   +  G P          T+ L  +   +
Sbjct: 346 RGARPKHCAVLYRSSRQARAVEQNLQEHGLPFRMLGGQPFYDKKTVKDATAYLKLLVMPS 405

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
           D +A+   +  P    G            +    L         ++  +        + +
Sbjct: 406 DDIAVRRALDTPAKGIGRKTVERMSHWAEVHQKRLVDAIYHAKEIEGITGRPLESLERFH 465

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
           N       +      K+     +D++    + L    + + +     S+           
Sbjct: 466 NQLRHAQIAASRGSVKDALRGFLDNVRLRDSVLKETGSGEATKVRWDSVQFLLDSVGRFE 525

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
           +      ++K    W +  G        +                               
Sbjct: 526 ER---AWNQKGKPRWSDYLGNLDLKKKDE------------------------------D 552

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +     S+ L +  + + G+ EG  P      P LS  +  DL  +    Y+
Sbjct: 553 EAVPDAITLSTFHSSKGLEWSQVFIIGVEEGTLPHKRTDAPRLSDAIAGDLEEERRLFYV 612

Query: 682 GQA-AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
           G   A D            TR  R   +    SR+L  L          N  +  +   
Sbjct: 613 GITRARDRLWMTRAA----TRVDRGRELEIKPSRFLDELPEPDSGVIEHNDTRETEKLT 667


>gi|154244732|ref|YP_001415690.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154158817|gb|ABS66033.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 1107

 Score = 78.4 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 86/771 (11%), Positives = 190/771 (24%), Gaps = 72/771 (9%)

Query: 192  SKYWTERLVELNASSPVGYQIALMRAE--AEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
               +      L+    +    AL+R        +      I +     + P  A ++  +
Sbjct: 342  YAAFKRAAAVLDFDDLLERARALVRGHDAVRRALGQRYSHIFVDEFQDTDPIQAEILFRI 401

Query: 250  A----------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            A          +      +    D       +      S     S               
Sbjct: 402  AADDSPPRWQDSRLRAGALFMVGDPKQAIYRFRGADVGSYAEARSAIAR--------RWP 453

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
             + + I      R   +S+     +  +S    P         D  ++ +P   K   D+
Sbjct: 454  NNIVQITANFRSRPAILSHINRCFATPLSAQNQPGYVELAPTLDPPDHDLPCAAKITIDL 513

Query: 360  --ALIEADNEREEAISIAIALRMSLDE-------------NKKKSALITADRNLARRVKL 404
                  A     EA  +A      +                    AL+    +   R + 
Sbjct: 514  PPDSRAAQIRDAEAEVVADLCARLIGNVTIRDEDGDLAPLTPGGIALLAPTGSELWRYER 573

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
                 G+ I   AG  L        L +L+  +    D +A   L++ PL      E   
Sbjct: 574  AFEARGLRIASQAGKGLFRRQEVQDLVALVRVLADGGDTLAFGALMRGPLVGLSEEELLD 633

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
              A                  +  +   + R +   +   V H  +R      +      
Sbjct: 634  ITAG--------------LPPLADRPEAIPRFSLATDADDVAHPVARRVLTILQDLRRRA 679

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
                  +      +        +    D +      ++ +                    
Sbjct: 680  RATTPALLLAEAVERLAVRPILSAREGDRSARAAANVEALLERARPYGVKGMKRFARDVS 739

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
                         + A+  + I+IIT         P +   +T  +L + E  +   D  
Sbjct: 740  RDWRGGAAYNEGRVDADG-DAIEIITIHSAKGLEWPVVIPINTATLLRSREPFVHRAD-- 796

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
                        +      +   +++ L          +    +      R L+      
Sbjct: 797  --------DDTLHWVIGDVVPPELRAALETDDESLTRERERLWYVACTRARELLIV---- 844

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
               +     +   R++ LG     +    R              T+       +     E
Sbjct: 845  -PELAQAEQKSWARVVNLGHDALPELDISRMTPAPMPMSADPPNTQTAELFAAERATIEE 903

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
            A     + + ++   +DP  + A   + LD     + D      G +   ++ +L+++ +
Sbjct: 904  AA---VALTWVRPSDHDPDRLEAVEAITLDAGDAPEVDL-PVGAGRVRGLLLHKLMEEVL 959

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV- 883
            +    E              +  L P             + ++   +    +++      
Sbjct: 960  SGELVEEVGRFVSRARELLTELVLDPDDSEALPDSDEIAATAWRTLQLPDIAALRDRLTP 1019

Query: 884  NIPAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
              P    +E       L G  D I         + D+K+  +P     +  
Sbjct: 1020 EWPVYALLEDSSKPRALAGRIDAIAYTGDRAEVVVDWKSDVDPSDADIRLH 1070


>gi|298368781|ref|ZP_06980099.1| exodeoxyribonuclease V, beta subunit [Neisseria sp. oral taxon 014
            str. F0314]
 gi|298282784|gb|EFI24271.1| exodeoxyribonuclease V, beta subunit [Neisseria sp. oral taxon 014
            str. F0314]
          Length = 1211

 Score = 78.4 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 101/922 (10%), Positives = 203/922 (22%), Gaps = 82/922 (8%)

Query: 112  LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171
            L +L      KLP    +             A A    ++LA+    + +     E    
Sbjct: 284  LPKLSKTTHEKLPMFSTEALENGLKKGQSPDAAAFAALQDLANFGRDLNSA---AEAEQN 340

Query: 172  LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI- 230
                         AD L    K   ER  +               AE           + 
Sbjct: 341  TLTLLCLELLDYLADALSEQKKARRERGFDDLLLDVHRALTDNPHAETLAQTVARNWRVA 400

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            +I     + P    +   +     G  +    D       +      +    + +  +  
Sbjct: 401  LIDEFQDTDPLQYEIFQKIF-ITQGNPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHHY 459

Query: 291  HPQ---YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL--PPDTSDMRNTDIL 345
                   S AKL+D +        R   +    Y       K+    P   +        
Sbjct: 460  TLATNYRSHAKLVDSIGALFRRKNRPFVLERIDYADVGAARKTSRLTPARPAVQVRWLHG 519

Query: 346  ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRV 402
             +  P  +      A     +E   A++ A   R++  +        A++    N    +
Sbjct: 520  ADAEPPNKDILRKRAAEYCADEIAAALNDAEEGRLNFKDRPLQSGDIAVLVRTHNEGSMI 579

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
               L   GI   +     +  +  +    SLL           +   +   L ++   E 
Sbjct: 580  ARALKNRGIQSVLLHRTSVFASAEARATASLLEFWLDPRRTEPLRFALAGVLFRYTADEL 639

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
            +             R      D MD      ++   Q     + H+ +R   E + L+  
Sbjct: 640  HAL----------NRDEARLLDWMDSAQTAHEQWKQQGIYAAMQHFSARHGIEARLLSHD 689

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
                +      L              S+  W              +     +L   E  +
Sbjct: 690  GERSLTNYHQILELLAEEDAHNRNPSSLYQWL--LEQISLASGDKKTSGENDLIRLESDE 747

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             L  + +     G         ++     L  G+         +   + G          
Sbjct: 748  ALVKIVTMHASKGLQYPLVYCPFVWDAQPLKSGDWQILHRSGGAAELLAGHQLDDADQAR 807

Query: 643  TL--ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
                        ++   T     L+                            T+     
Sbjct: 808  LADEETSERLRLLYVALTRAEEQLNIYAACCDGTPDNTFAYLLEGRADSSRGETQKAYLH 867

Query: 701  RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
            R   +     +                 +                        Y+     
Sbjct: 868  RKSGKGGKTALMQMLEDNWRQFIARAPDNTDFAFADKAPAEAALQSRRGGGITYRAAVIP 927

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD------------------ 802
                   R  SF+ + + +             LD   + ++                   
Sbjct: 928  KRSFDIVRHTSFTGLSRHVKTRDDEREELQPALDPAENIERPSENIVSDGLTDAEDIHHF 987

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEI----------NHLMKQIIDSHFEKENLPPHI 852
            P  T+ G   H I+ +           E               +  + +  ++  L P  
Sbjct: 988  PRGTNAGICLHEILEKFDFSLSAAEQAETVRESLSRYGFEPRWQPAVHTMLDRCRLTPLT 1047

Query: 853  DIIWRH------LFHKI----------SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
                           ++                   +  S +          +  + +  
Sbjct: 1048 AAYALADIPPQNRLPEMGFTLYMEDFGLERLRAWLARPNSGLPPECAEAARILDFKDVQG 1107

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK-----------LIDPQLSLEAAALK 945
             L+GF D +     G V I DYK+        A                 Q  + A A+ 
Sbjct: 1108 FLSGFIDMVYQDSDGLVCIIDYKSNHLGNNAEAYTPQTMNEAMAHHHYYLQALIYAIAVA 1167

Query: 946  AGSFSQIDCRKVANLFYIRLKQ 967
                 +        + Y+ L+ 
Sbjct: 1168 RYYTLRRRPLPRIAVRYLFLRG 1189


>gi|126323032|ref|XP_001370790.1| PREDICTED: similar to epiplakin [Monodelphis domestica]
          Length = 5570

 Score = 78.4 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 81/757 (10%), Positives = 187/757 (24%), Gaps = 50/757 (6%)

Query: 50   YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL--LSYNLNPPVSNIQ 107
             VP  R+ Q  R  F+   G      P+ + L  +  E+     L      +      ++
Sbjct: 328  LVPAARSFQADRDAFVAWLG------PVERLLAQLWWEEPGTGPLQSALQQVQGVCEEVR 381

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
            +      ++     +L +++     +            + LA      I  +  E    +
Sbjct: 382  QKASDMEIVREMGQRLLELVAGEEAQLVREQLEELRVRLLLAGQSGAHI-RLRLE----Q 436

Query: 168  DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
             L A    +        A +L    + W     E             +  E   L    +
Sbjct: 437  TLEAATRLQPSGEPPPPAAWLGRLEQAWAA--AEPGEQEDREQLWKAIAEELGRLSTLGQ 494

Query: 228  GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
                + G T    A    +        G   L   +      +   +    +    S   
Sbjct: 495  RVEELNGVTLEASALQTQL--------GQHKLLAAELLQQQELRTRLLGLLSTGIPSLCP 546

Query: 288  YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                 Q  L   L+ L  + ++V++          R++ +   F           +  ++
Sbjct: 547  SEEREQ--LQAELELLRSRSQEVQQSSTAGVLCRERALSLLAQFAEAQGELAPWLEEAQD 604

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELT 407
             + ++    +  +      ++E    +  A+        K   +    ++L         
Sbjct: 605  IVTHLNPHAAAGSPEACREQQELLQHLREAIAEHRPLVGKLQRVFLQLKDLNPGQSTPFQ 664

Query: 408  RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
                          +     ++   + +    L   +   T +   LA+       L + 
Sbjct: 665  EA---------WQAAEEELGALRGRVDSVAATLGQTVPQYTQLSERLARLAE---QLEQL 712

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
               +E V             L+   L     +     +   ++R  E    +A  L +  
Sbjct: 713  ARRVENVGTVRADAQRIREQLREQSLLLSELEPVGAALDTARTRAQELGAGVAGTLDESP 772

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVT-CLQNVCLDEHRKLPNLWFEEEGKTLSS 586
               I P    +   +      S            L+ V     +    L         + 
Sbjct: 773  EAGIGPGAVLRAEADRLWDRWSGMQAAAQERASWLRVVLALAEQFWQGLADLATSLADTQ 832

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
                 +E            +  +  L +          +     L  L +        + 
Sbjct: 833  HLVLHMEDAGPEPEGIRSRLSAMQALREEVDGLQSELDALGALGLELLSACGDGDRPEVT 892

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
              ++E     ++    +  R    +  L+ A  Y            G   L   +  R  
Sbjct: 893  RSMDELYASWHSLSRVWTERHRHLEEQLQDALSYQEAMQRLLTWLEGA-ELRLGQDFRVG 951

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                +A + L+ L       +   ++                 +        P PP    
Sbjct: 952  GTLELAKQQLEELKDFKRDLYQSRVEVESLR-----------HRPAPGGPEDPSPPPLLG 1000

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                 +  ++Q            +L L  +    ++ 
Sbjct: 1001 DFRLRWDHLEQETGSRQQQLEAALLGLGQLQPQLEEL 1037



 Score = 52.2 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 80/815 (9%), Positives = 191/815 (23%), Gaps = 77/815 (9%)

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI-- 158
              +S + +  E    +  W  +  DI+  L P +    P +      L ++L + I    
Sbjct: 580  RALSLLAQFAEAQGELAPWLEEAQDIVTHLNPHAAAGSPEACREQQELLQHLREAIAEHR 639

Query: 159  -----IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP-----V 208
                 ++    + +DL+  ++  +   W  A + L             L  + P      
Sbjct: 640  PLVGKLQRVFLQLKDLNPGQSTPFQEAWQAAEEELGALRGRVDSVAATLGQTVPQYTQLS 699

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                 L     +   +      + A +             ++          G       
Sbjct: 700  ERLARLAEQLEQLARRVENVGTVRADAQRIREQLREQSLLLSELEPV-----GAALDTAR 754

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
                 +          +      P   L    D L        R   +      R+  + 
Sbjct: 755  TRAQELGAGVAGTLDESPEAGIGPGAVLRAEADRL------WDRWSGMQAAAQERASWLR 808

Query: 329  KSFLPPDTSDMR----------------NTDILENKIPNIQKCFSDVALI--EADNEREE 370
                  +                     + +    +   I+   S +  +  E D  + E
Sbjct: 809  VVLALAEQFWQGLADLATSLADTQHLVLHMEDAGPEPEGIRSRLSAMQALREEVDGLQSE 868

Query: 371  AISIAIALRMSLDENKK-KSALITADRNLARRVKLELTR----FGINIDISAGIPLSTTL 425
              ++       L          +T   +        L+R       +++      LS   
Sbjct: 869  LDALGALGLELLSACGDGDRPEVTRSMDELYASWHSLSRVWTERHRHLEEQLQDALSYQE 928

Query: 426  HSSILTSLLN----AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR---- 477
                L + L      + +         L K  L +    ++ L +++  +E +  R    
Sbjct: 929  AMQRLLTWLEGAELRLGQDFRVGGTLELAKQQLEELKDFKRDLYQSRVEVESLRHRPAPG 988

Query: 478  ---GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                      + D +           +             + +     LV  +      L
Sbjct: 989  GPEDPSPPPLLGDFRLRWDHLEQETGSRQQQLEAALLGLGQLQPQLEELVQWLGHTAEQL 1048

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                        +L +                   R        E  + L    + + E 
Sbjct: 1049 -----QGAPAVVSLDLPSCEIELAKLQVLQNDVLSRAQTVQSVSEAAQGLLQ--AGLGEA 1101

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF-ILGTLESRLLNFDTLILGGLNEGV 653
             + ++A           +      +    ++S    +   LE +   ++     GL + +
Sbjct: 1102 EAGLRAALQTLDQRWEAVQGESQSRQLQLENSRAQELCRELEQKQPEYE-----GLRQRL 1156

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
                        R     +  + + + + Q           R +  +  L          
Sbjct: 1157 GRLLPPPPLSGPRPPPRPVGTEHSLRLLEQTWERVVARTQERKVWLSEGLALTTEFHQRL 1216

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK----QPHYKRPKPFPPLEAQPRT 769
            + L R                        +  ++            +       +     
Sbjct: 1217 QALLRWGARVEEHLGSLPPPSLVLDTVLAQLQEHKVCGLSLVGVLAQEVAVQGEKLGALE 1276

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT-DRGTLFHNIITELIKKRINKNT 828
                 ++   +        + L L       +   R  DRGT          K+ + +  
Sbjct: 1277 VVAGRLRGF-SPEQDCALIQSLVLSTQERLGRAIQRIGDRGTAL-EEARRRAKQVLLELF 1334

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
             E   L+   +D       LP  + +    +  ++
Sbjct: 1335 TESRQLLLDWLDEVEPTLILPGDVALSQEEIKEQL 1369



 Score = 44.9 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 69/653 (10%), Positives = 162/653 (24%), Gaps = 63/653 (9%)

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP-PDTSDM 339
           ++ S    ++ PQ++     +  +        L ++     G+    ++  +      + 
Sbjct: 172 LSESAGPLASAPQWAALPPTEPPEPPAALQSWLDDMEELQAGQGPPAAEVKVANAQLQEQ 231

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
           +   +L +   N  K      + +  +   E+      L+  L+E + +   +  D    
Sbjct: 232 KYVGLLSHLSGNNSKFLKSSTMDKVPDIHIESEDSQELLKRLLEEGRPRMERLLQDTREQ 291

Query: 400 RRV------KLELTRFGINIDI-----SAGIPLSTT--LHSSILTSLLNAIFKLNDFMAI 446
                       LTR     D       A   L       +    +  +A       +  
Sbjct: 292 PAEGGQGEESETLTRLQKQWDQLTDKAEARWRLLEQLVPAARSFQADRDAFVAWLGPVER 351

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT-QKNNTHV 505
              +   L         L  A   ++ V     + + D+  ++ +    +         +
Sbjct: 352 ---LLAQLWWEEPGTGPLQSALQQVQGVCEEVRQKASDMEIVREMGQRLLELVAGEEAQL 408

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
              Q         LA     HI   +   +   T    +      + W            
Sbjct: 409 VREQLEELRVRLLLAGQSGAHIRLRLEQTLEAATRLQPSGEPPPPAAWLGRLEQAWAAAE 468

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
             E      LW              I E    +        ++    ++   ++ ++ + 
Sbjct: 469 PGEQEDREQLWK------------AIAEELGRLSTLGQRVEELNGVTLEASALQTQLGQH 516

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
             L     L+ + L    L L          +  +        Q++L L  +     Q +
Sbjct: 517 -KLLAAELLQQQELRTRLLGLLSTGIPSLCPSEEREQL-----QAELELLRSRSQEVQQS 570

Query: 686 HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
               +    R L       E         WL+    +             +   +    L
Sbjct: 571 STAGVLCRERALSLLAQFAEAQGELAP--WLEEAQDIVTHLNPHAAAGSPEACREQQELL 628

Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR-RILKLDFIPHFKKDPD 804
            +  +     RP                ++K L       +        + +   +   D
Sbjct: 629 QHLREAIAEHRPLVGKLQRVFL------QLKDLNPGQSTPFQEAWQAAEEELGALRGRVD 682

Query: 805 --RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII-WRHLFH 861
                 G              +++    +   ++Q+         +      I  +    
Sbjct: 683 SVAATLGQTVPQYTQ------LSERLARLAEQLEQLARRVENVGTVRADAQRIREQLREQ 736

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKM--AIE-------SIGIHLTGFADRI 905
            +  S LE       +       + A +   ++         G  L   ADR+
Sbjct: 737 SLLLSELEPVGAALDTARTRAQELGAGVAGTLDESPEAGIGPGAVLRAEADRL 789


>gi|292670883|ref|ZP_06604309.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas noxia ATCC
            43541]
 gi|292647504|gb|EFF65476.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas noxia ATCC
            43541]
          Length = 1256

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 85/845 (10%), Positives = 205/845 (24%), Gaps = 135/845 (15%)

Query: 214  LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
                E    ++     I++     +      ++  +A   N  IV    D       +  
Sbjct: 411  AAPTEIADELRAHYDAIMVDEYQDTNGLQEGILRQIARENNRFIV---GDVKQSIYRFRL 467

Query: 274  ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
                     +         +  L  + D    + E ++ +  + +++  +  V     + 
Sbjct: 468  ADPSLFQ-HTYEAYRGDSAEGELVTMSDNFRSRAEVLEPINEIFSQIMSKEAVDISYDVH 526

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE------------EAISIAIALRMS 381
               +        E           ++ L+ AD   +            EA  IA  ++  
Sbjct: 527  AHLNPGLV--FAEPTKGTSLAGPLEINLLHADYSADAEGEEERKAFEIEAHFIARRIQKL 584

Query: 382  LDENK-----------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
              E                 L+   +  A  +   L +  I                 ++
Sbjct: 585  KSEGYVLHNGHAVQNKDIVILLRGAKERAGILLDALRKENIPAYADDTAGYFEASEIRMM 644

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             SLL  +        +  ++  P+      +    R      L  +           L  
Sbjct: 645  LSLLAVLDNARQDTPLTAVLVSPMIGMTMEDMAALRI--HTPLGGIYDILIGATGGGLSD 702

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
             +  + A          W+  +  +     + L+         +               +
Sbjct: 703  ELTAKAANALERIRY--WRRCVLVQSVPELLRLLYRETGYYDYVGGLPGGILRQANLRML 760

Query: 551  SDWT--------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
             D          +     L+ +   + R          G++   +    I     ++   
Sbjct: 761  IDRAADFERTNERGLFRFLRYIDALKRRSTDLSVARTLGESEDVVRIMTIHRSKGLEFPI 820

Query: 603  IEWIDIITR---LIDGETVKPKIEKSSTLFILGTLESRLLNFDT---------------- 643
            +   +I            +     +   L +     +    +DT                
Sbjct: 821  VFLANIAGAFNMQDAQGDLLCHAHEGIGLRVYENSMTGRQKYDTMSRRKVKAVIQRETMA 880

Query: 644  -------LILGGLNEGVWPKNTA-------------KNPFLSRVMQSDLNLKTAEKYIGQ 683
                   + +    E +    T              +   L      D           +
Sbjct: 881  EEVRILYVAMTRAQEKLILTGTLNITRTGKDALEQLRETCLKYTPIQDAVFPKEAILGAR 940

Query: 684  AAHDF--EMANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGTDFFDNLKKRGQC 737
            +  D+               +  ++ +  + S     +  R++           ++    
Sbjct: 941  SYLDWIALSLMRHPDGAVLFNDTDDIVCRMPSNPKAHFDVRIIDENIRASQKEAQENEDD 1000

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQ-------PRTYSFSEIKQLIND--------- 781
             L   R  +         R                     S +E+K+             
Sbjct: 1001 ILTAVRVDEPLPVGKDADRVAAVLGWVYDLRGTVQIHAKTSVTELKRQQEAEEKSIAPFL 1060

Query: 782  ---------PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
                     P      R L+     +        +RGT  H ++ +L     + +     
Sbjct: 1061 PAVGDSVDTPLEWEVPRFLRSSEREY----LTPMERGTAMHTVMQQL-----DLSDIANI 1111

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAI 891
              ++Q +++  EK  L      I   +      +F+      +  + + ++  +P    +
Sbjct: 1112 AAIEQQVNALVEKGILTEAERSI---INLDHIWTFVSSNLGRRMHAAKAVYRELPFGRLL 1168

Query: 892  ESI-----------GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
             +             I L G  D +   ++G   + DYKT       TA+     Q+ L 
Sbjct: 1169 PAHAYYKGATDENDQIFLQGIIDVLFEEENGNYILVDYKTDRKISAATARARYQFQIDLY 1228

Query: 941  AAALK 945
              A++
Sbjct: 1229 CDAVE 1233


>gi|210635293|ref|ZP_03298489.1| hypothetical protein COLSTE_02420 [Collinsella stercoris DSM 13279]
 gi|210158454|gb|EEA89425.1| hypothetical protein COLSTE_02420 [Collinsella stercoris DSM 13279]
          Length = 384

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 48/378 (12%), Positives = 84/378 (22%), Gaps = 104/378 (27%)

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                           +P+   P+         RT S S+++  +  PY  +    +    
Sbjct: 13   DDVPRLPEHALPRELRPYVLLPQRCINGRPLTRTLSASQVENYLACPYRWFVNSRVVTRR 72

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNT--------PEINHLMKQIIDSH----- 842
            +     +    +RG   H+++    ++                    M    D       
Sbjct: 73   LDV---EFGPIERGNFSHDVMQRFYERLAECGLVRVRPQTVDACIEQMDIAFDEVRADHL 129

Query: 843  --------FEKENLPPHID-------IIWRHLFHKISHSF---LEHEEKIQSSIEKIFVN 884
                    +  E  P  I         + R     +   F   + HE  +    E     
Sbjct: 130  RGKYTHGKYAAEERPRAIRGALVPLDELERMRVDAMREQFHEVVRHEADLLPIYEPARFE 189

Query: 885  IPAK---MAIESIGIHLTGFADRIDLLKS----GFVDITDYKTGDNP------------- 924
                   +        L G  DRID+           + DYKTG N              
Sbjct: 190  YSFDKQGVTYAGRP--LGGRIDRIDVAPDAGSGKRFVVIDYKTGANVDAMACPDPTMQLD 247

Query: 925  ----------KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ------- 967
                            K    Q  + A AL+      +         Y  L+        
Sbjct: 248  EGEQLAADWLPGRDRDKAPKVQTLMYATALER-----MTGGSAQGAVYYGLRGPSIAGAV 302

Query: 968  ----------------------KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
                                    K              EL E+  + +   +  L++G 
Sbjct: 303  SSALTECEPSAFPLDKKACPYPGVKGRSRVKRDGDMEFPELLERVERGIARELDALESGA 362

Query: 1006 QPFISHLRLSEKSNIQSE 1023
                   R +  S     
Sbjct: 363  IA----PRPASDSCSFCP 376


>gi|311744700|ref|ZP_07718497.1| ATP-dependent DNA helicase PcrA [Aeromicrobium marinum DSM 15272]
 gi|311312009|gb|EFQ81929.1| ATP-dependent DNA helicase PcrA [Aeromicrobium marinum DSM 15272]
          Length = 774

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 81/730 (11%), Positives = 196/730 (26%), Gaps = 110/730 (15%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLG 82
           +L   +         +P    S+     T +A  E+R    E+ G   ++     + +  
Sbjct: 59  VLTRRIAWLMAARGAHP---GSILAITFTNKAAAEMRERVAEMVGGASRAMW---VSTFH 112

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                    +                 L       ++       +  L        P   
Sbjct: 113 SACVRILRREAA--------------TLGYTSSFTVYDAADSRRLMTLVCRDMQLDPKRV 158

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                LA      +  ++ E    E   A    +         +    A   +  RL+  
Sbjct: 159 NPRAVLA-----HVSNLKNELVDHE--SAAGRAENPTE-----ELYAEAYGTYQRRLIAA 206

Query: 203 NASSPVG------YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           NA           +      A AE   +     +++     +  A   L+  + +  +  
Sbjct: 207 NAMDFDDLIMNTVHLFQAFPAVAESYRR-RFRHVLVDEYQDTNHAQYSLIRELCDPESDL 265

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
           +V+   D       +   + ++      +   +             L+      + + + 
Sbjct: 266 LVV--GDSDQSIYAFRGASIRNILEFEDDFPDARTIL---------LEQNYRSTQTILSA 314

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA- 375
           +N +  R+                     E  + + +     +    AD+ER+EA  IA 
Sbjct: 315 ANAVISRN-----------------EGRPEKNLWSAEGEGEKIVGYVADDERDEAQFIAD 357

Query: 376 --IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
               L           A+       +R  +    R G+   +  G+            + 
Sbjct: 358 EIDTLTDDGAATPAGVAVFYRTNAQSRIFEEVFIRVGLPYRVVGGVRFYERKEVRDALAY 417

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L A+    D +++  +V  P    G   +       A E V+      +    D  + + 
Sbjct: 418 LRALVNPRDTVSMRRIVNEPKRGIGDRAEASLEVFAAREGVSF---WEAMRRCDEVADLA 474

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK--TNKNSTCGNLSIS 551
            R  T          +     E    A  +++  L     L   +   +        +++
Sbjct: 475 TRSRTAVAGFAGTMAELMELAESGAPADQVLEAALTRSGYLAALEKSDDPQDESRVENLA 534

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
           +   +    +                     T+        +       +   +++ ++ 
Sbjct: 535 ELVAVAREFVT-----------------AAATVDDDAPADPDDVDLTPGSLAAFLERVSL 577

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
           + D +++         + ++    ++ L F  + L GL +G++P   +         +  
Sbjct: 578 VADADSI--PDSGDGVVTLMTLHTAKGLEFPVVFLTGLEDGIFPHMRSMGDPAELAEERR 635

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
           L      +   +       A        +RS         ASR+++ +      D   + 
Sbjct: 636 LAYVGITR--ARERLYLTRAT-------SRSAWGAPSYNPASRFVEEV-----PDHLVDW 681

Query: 732 KKRGQCYLDW 741
           ++       W
Sbjct: 682 RREASPPTQW 691


>gi|209694269|ref|YP_002262197.1| exonuclease V subunit gamma [Aliivibrio salmonicida LFI1238]
 gi|208008220|emb|CAQ78365.1| exodeoxyribonuclease V gamma chain [Aliivibrio salmonicida LFI1238]
          Length = 1127

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 85/746 (11%), Positives = 189/746 (25%), Gaps = 63/746 (8%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            +L   +VE  R +PL+        I V +    Q L+ E  +  G  + +      L  
Sbjct: 11  DVLKSLVVELIRLNPLD-NPFEQEQILVQSPGMSQWLKIELAKELGIAANLT---FPLPA 66

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                    +L      P  S   +     +++ +    L             +      
Sbjct: 67  TFIWDLFTQVLDDV---PKRSAFNKEAMTWKIVTLLPELLKQDEFAPLQRYLENDDKQL- 122

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNE----KYGMWWLLAADFLKIASKYWTERL 199
               LA  +ADI D       +W        E    +    W        +  +      
Sbjct: 123 KCYQLAAKIADIFDQYLVFRPEWIQKWEAGEEVIELEGEHPWQPILWQ-ALYDQTLALGH 181

Query: 200 VELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
              + ++   + I  +    +           + + G T   P     ++ +  H +  +
Sbjct: 182 SPYHRANMFEHFIETLENYLQTGTLPKGMPKRLFVVGITSLPPRYLDALAALGQHIDVHL 241

Query: 258 VLPGLDCHIPTAIWN----------TITEKSTNITSSNTTYSTHPQYSLAK----LLDFL 303
           +      H    + +              K  +   S         ++       L  + 
Sbjct: 242 MFTNPCQHYWGDLRDNKYLAKLDRQNRIAKRLSSDLSTLENDDSDLFTNKSENSLLASWG 301

Query: 304 DIKREDVKRLGNVSNE------MYGRSMVISKSFLPPDTSDMRNTDILENKIP---NIQK 354
            + R++ + L ++           GR  ++          + R+ D + +       I  
Sbjct: 302 KLGRDNFQLLLDLEPNEYKIFVPTGREDLLHSIQSDILNLEERSRDDVLDNSEHKQPISP 361

Query: 355 CFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVK------L 404
               + L    +   E   +   L        +   +   ++ AD N+            
Sbjct: 362 DDRSILLHSCHSPMREVEVLHDQLLDMFANDPELKPRDIIVMVADINVYSAAIQAVFGNA 421

Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEK 462
              R+     IS               +L+           + +L++ P    +F F  +
Sbjct: 422 AFDRYI-PFAISDQSAEQENPVLLAFMNLMALPENRCGLSELLSLLEVPAVMSRFKFNAE 480

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLK----SLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                K   E   +R   ++           +        Q+        Q     E   
Sbjct: 481 QFEIVKRWAEETGIRWGLDNSTSAHFDLPEHNQNSWLFGIQRMLLGYAMEQDAGLFEGMA 540

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD--EHRKLPNLW 576
               +     +    L  +     +    L  +       T +  +  D         L 
Sbjct: 541 SYEQVQGMNAEIAGNLAHFIDQLLTYQITLGQAQKINAWRTIINQLMDDFLLVELEGELV 600

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            +     L  L   + + G     +A    + +   + G     +      +     +  
Sbjct: 601 VKSIRDQLQKLEENLEDAGFDAPISAPIINNYLKNNLSGGKASQRFLAG-KVNFCTLMPM 659

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           R + FD + L G+ +G +P+      F     +     ++            E       
Sbjct: 660 RSIPFDVICLLGMTDGSYPRTMPVEGFDLMQKRMKPGDRSRRDDDRY--LFLEALQSANK 717

Query: 697 L-IYTRSLRE--NNIPTIASRWLQRL 719
               +   R   +N     S  +  L
Sbjct: 718 AFYLSYIGRSIRDNTEKAPSVLVSEL 743


>gi|315446056|ref|YP_004078935.1| DNA helicase/exodeoxyribonuclease V, subunit gamma [Mycobacterium
           sp. Spyr1]
 gi|315264359|gb|ADU01101.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Mycobacterium
           sp. Spyr1]
          Length = 1083

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 90/887 (10%), Positives = 216/887 (24%), Gaps = 55/887 (6%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
             LL   L       P +P   A   + V  +   + L      + G+ S    I   + 
Sbjct: 11  TDLLADGLGAMLSDPPADP--FAEDLVLVSARGTERWLSQRLSHVLGRGSGQDGICAGVT 68

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                   A+L  +   +P   +      LA +           +               
Sbjct: 69  FRHPRSLIAELTGTREHDPWSPDAMVWPLLAVIDDCLAEPWCSTLGAHLGHFADGEEREL 128

Query: 143 AN--AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                  +A+ LA +     T+         L  +            L+   + +   + 
Sbjct: 129 RQGRRYAVARRLAGLFASYATQR------PRLLEDWLAGRTDGLDADLRWQPELYRALVD 182

Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
            + A  P       +    +      +  + + G T        L++ VA H +  + LP
Sbjct: 183 RVQADPPHVRHAETVARLVDSPTDLPER-LSLFGHTRLPVTEIELLAAVATHHDLHLWLP 241

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
                + T++ +          +S+         +L + L  L       + L   +   
Sbjct: 242 HPSDALWTSLRDVRDVIPRRDDTSHRRVGHPLLATLGRDLREL------QRCLPTDTVSD 295

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
                V     L          D +  +          V +        +   +   L  
Sbjct: 296 ESLGSVARPDTLLGWLQSDIGADRVRAEGRTHDAGDRSVQVHSCHGPARQVDVLREVLLG 355

Query: 381 SLDEN----KKKSALITADRNLARRVKLE----------LTRFGINIDISAGIPLSTT-L 425
            L+++     +   ++  D      + +                      A   L+ T  
Sbjct: 356 MLEDDPTLEPRDILVMCPDIEAYAPLIVAGFGLGDVVSGAHPAHRLRVKLADRALTQTNP 415

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF----------PEKYLSRAKNALELVA 475
              +   LL           +  + +    +  F                          
Sbjct: 416 LLGVARRLLELAGSRATAGEVLDVAEAAPVRARFGFSDDDLDAVGTWVRESNIRWGFDRD 475

Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            R       + +     +DR+      +         +    +++   V+   +    + 
Sbjct: 476 HRRPYGVDFVQNTWRFGIDRVLAGVAMSDDSRAWLDTTLPLDDVSSNRVELAGRLAEFVD 535

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
             +    S  G   ++DW     T +  +         +LW   + +   +  +      
Sbjct: 536 RLRDAVESLTGTAMLADWLARIRTGVSELTAVPD---SDLWQHSQLERELADIAAAAGVH 592

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
           +  +    +   ++ R + G   +    ++ TL +   +  R +    + L GL++GV+ 
Sbjct: 593 AGTELRLSDVRSLLDRHLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVF- 650

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIAS 713
                         +   +        +       A G     L+ T +           
Sbjct: 651 --PRVGVVDGDDALARDPMTGERDIRSEDRQLLLDAIGAATEKLVITYTGANEYSGQRRP 708

Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
             +  + +L   D   +   R + +     +              P             +
Sbjct: 709 PAVPVVELLDTLDVTTSSPVRDRVHTSHPLQPFDIANVTPGALNMPVNTPFTFD---PTT 765

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
                         R +L          D    D    F + +    +   +   P    
Sbjct: 766 LTAARATTGDREEHRPLLAEPLPAPPADDVALDDLIGFFRDPVKGFFRAL-DFTLPWEVD 824

Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
            +   I    +          +   +   +S +  +  E  + S+  
Sbjct: 825 GLDDAIPVDVDALQEWKIGQRLLDDMQRGMSPAQAQQAEWRRGSLPP 871


>gi|300934454|ref|ZP_07149710.1| RecB family exonuclease [Corynebacterium resistens DSM 45100]
          Length = 234

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 71/215 (33%), Gaps = 24/215 (11%)

Query: 805  RTDRGTLFHNIITELIKKRINKNT-PEINHLMKQIIDSHFEK-----ENLPPHIDIIWRH 858
               +GTL H ++ +L      + T P    ++K       E      E +P      +  
Sbjct: 2    AQVKGTLVHAVLEDLHGLPRAERTYPAAVKMLKPKWAKMVEDDPELLELVPDSETHAYLV 61

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                +   +     +     +         M +   G+ + GF DR+D+  +G V + DY
Sbjct: 62   ECRSLVKGY--FYMENPEGFDAHECEKYINMMLP-NGVPVRGFIDRVDIAPTGEVRVVDY 118

Query: 919  KTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
            KTG  P      +    Q+   A         +I  +    L Y+++     ++    + 
Sbjct: 119  KTGKKPLPR-YSESAKFQMLFYALVWWR-MTGEIPAQ--LRLMYLKVADDMVLNPSPAE- 173

Query: 979  KKYSADELSEKSLKNLIEIVTLL-QNGEQP-FISH 1011
                     +   ++L  +   + ++ E   F   
Sbjct: 174  --------LQYFERDLETLWGAIKRDVETGEFTPR 200


>gi|254427199|ref|ZP_05040906.1| UvrD/REP helicase subfamily [Alcanivorax sp. DG881]
 gi|196193368|gb|EDX88327.1| UvrD/REP helicase subfamily [Alcanivorax sp. DG881]
          Length = 673

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 76/693 (10%), Positives = 175/693 (25%), Gaps = 121/693 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL--------SY 97
            +     T +A +E++    ++  +  T   I+ +  ++      ++L            
Sbjct: 50  HIAAVTFTNKASREMKERVQQLVSRDLTRGLIVSTFHNLGLRILKSELKACGLRNGFSIL 109

Query: 98  NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII- 156
           +       ++ +L                 +    ++ L LP    +      +L   + 
Sbjct: 110 DGADSKEILKEILRQGESERDLDAVDVIHKRISDWKNALVLPEEAVSTAETDDDLRAAMA 169

Query: 157 ----DIIET--EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
               D +        ++DL                                     P   
Sbjct: 170 YGGYDRMLRVCNAVDFDDL----------------------------------ILMPARM 195

Query: 211 QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
                R   +   +     +++     +  A   ++  +   P G       D       
Sbjct: 196 FREQPRILEKW--RNRIQYLLVDEYQDTNGAQYEMVKMLT-LPEG-KFTVVGDDDQSIYA 251

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
           W     ++      +                                 ++        + 
Sbjct: 252 WRGARPENLAQLQEDWP--------------------------TLKVVKLEQNYRSTGRI 285

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---K 387
               +T    N    E  + +       +      +E  E   IA  +     +     K
Sbjct: 286 LKAANTVIANNPHEFEKSLWSDYGYGEPIRFSALRDEEAETEWIASDIFHRRLQQGLQWK 345

Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
             A++      +R ++++L    I   +S G    +      L   L  +   +D  A  
Sbjct: 346 DFAVLYRGNFQSRILEMKLQSLSIPYKVSGGKSFFSRSEIKDLMCYLRLLVNPDDDNAFL 405

Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            ++  P  + G                   G  +  D   L  ++  + A          
Sbjct: 406 RIINTPRREIGPATLEKLATWALKREQ---GLYHVCDDFALSEVMNPKAAE--------K 454

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
            +      D +       + LQ +  L+T    +     N S     +  +  +  +   
Sbjct: 455 LKKFKEWLDTKRQFCFGQNSLQAVQELITDMDYEGWLMQNASSPRIGEKNIENIWQLVRS 514

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
             R L     EEEG +      K +             +D++ +  +        + S  
Sbjct: 515 IERMLEKQEDEEEGASDLESVIKKL-----------VLLDMLEQQQEE-------DDSDR 556

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
           + ++    S+ L F  + + G+ E           FL      + +    E+ +      
Sbjct: 557 VQLMTLHASKGLEFPHVYMMGVEEE----------FLPHRTSIEEDNIVEERRLMYVGIT 606

Query: 688 FEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
                       TR      I T ASR++  + 
Sbjct: 607 RARETLAMTQALTRKQYGERIDTTASRFVDEMP 639


>gi|50084109|ref|YP_045619.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1]
 gi|49530085|emb|CAG67797.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1]
          Length = 679

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 78/690 (11%), Positives = 181/690 (26%), Gaps = 114/690 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +T    T +A +E++    ++  ++      + +           +L  +         
Sbjct: 53  RITAMTFTNKAAREMKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTP-------- 104

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                    L   +     D  K +  +      +S A +  L   +A  +  I      
Sbjct: 105 ---------LKNNFSILDSDDCKRILMDLMQRDNLSGAESKEL---IAKAMKKIS----D 148

Query: 166 WEDLHALKNEKYGMWWLLAAD--FLKIASKYWTERLVELNASSPVGY-----QIALMRAE 218
           W++   L   +         +        + +   L   NA           ++    AE
Sbjct: 149 WKN--DLIVPEQAHSTCETVEDVQFAHLYQLYERNLRAYNAVDFDDLIVLPTRLLQENAE 206

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +  A   L+  +             D       W     ++
Sbjct: 207 VRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMG--QFTAVGDDDQSIYAWRGAKPEN 264

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
             +   +              +  L+       R+   +N +   +  I    L  D   
Sbjct: 265 MALLKEDFP---------NLKVIKLEQNYRSTSRILKAANAVIENNPHIFDKKLWSDKGH 315

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITAD 395
                               + +I   N+ +E+  +   L      N K     A++   
Sbjct: 316 GEV-----------------IRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRG 358

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              AR ++ +L +  I   +S G           + S L  I    D  A   ++  P  
Sbjct: 359 NFQARVLETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKR 418

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G          +    ++                +L   A Q+ +  +P   +    E
Sbjct: 419 AIGPVTLEKLGLFSQENHLS----------------LLAAAADQRLSMVIPKKAASQLHE 462

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             +        +L    P+   +   N               +  ++       ++   L
Sbjct: 463 FADFITTFTRELLDDDEPVPKVRQMMNE-----------AGYIDYIREQAATPAQEKTKL 511

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              E   +         E        ++    ++  +++ +    + E +  + +L    
Sbjct: 512 DNIESLFSSIQNLLNRTEDVDEKNIESVIRKLVLLDMLEQQ---QEEEDTDKVNLLTLHA 568

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + + GL E + P   +                 A+    +    +      R
Sbjct: 569 AKGLEFPFVYIMGLEEELLPHKNSI---------------AADTIEEERRLMYVGITRAR 613

Query: 696 H-LIYTRSLRENNI----PTIASRWLQRLL 720
             L  T + +  N         SR+L  L 
Sbjct: 614 QGLTLTLAEQRKNGGQMKQMTPSRFLDELP 643


>gi|78189378|ref|YP_379716.1| DNA helicase II [Chlorobium chlorochromatii CaD3]
 gi|78171577|gb|ABB28673.1| ATP-dependent DNA helicase PcrA [Chlorobium chlorochromatii CaD3]
          Length = 743

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 90/753 (11%), Positives = 200/753 (26%), Gaps = 133/753 (17%)

Query: 46  SVTIYVPTKRAIQELRSE---FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
           ++     T +A  E+R      +     +      I +   +        +         
Sbjct: 54  NILALTFTNKAAGEMRERVDTLLHHGASRGLW---IGTFHSIFARLLRNSIDRI------ 104

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                R   +            D  + L  +S   L IS A+A+ L   L  II   +  
Sbjct: 105 --GYDRNFSIFD---------ADDSRSLIRQSMAELDIS-ADAVPL-NTLQSIISRAKNS 151

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ---IALMRAEA 219
                +     N+        AA         + ++L E NA          + L  A  
Sbjct: 152 FVMPAEFQRNANDYNQ---QKAAQ----VYSLYCKKLKENNALDFDDLLIKPLELFNAHP 204

Query: 220 E--HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           +  H ++     I+I     +      +   +        V+   D       W      
Sbjct: 205 DVLHELQELFRYIMIDEYQDTNRVQYLVAKMLGARHRNIFVV--GDDAQSIYSWRGADIS 262

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +     H   +                        +              ++ 
Sbjct: 263 NILNFQDDY----HDAQTFK----------------------LVENYRSTGNILKAANSV 296

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITA 394
             RN   ++ ++ + +     + ++EA NER EA  +A  +R        + +  A+   
Sbjct: 297 ICRNQRQIKKELVSHRHAGEPLTVMEAFNERNEAEKVADRIRTMRMSGTNDYRSFAIFYR 356

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  + +  I   +   +            + L  I    D  ++  ++  P 
Sbjct: 357 TNAQSRVLEDIMRQQRIPYRLFGSVSFYKRKEIKDAVAYLRFIVNERDSESLLRIINFPP 416

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
            K G       R                                     H+  +++    
Sbjct: 417 RKIGDVSIAKLR-------------------------------DFAEVRHISLYEAIHRA 445

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
            +      L++ +    + +   +           +++   LT   L     +    L  
Sbjct: 446 AEAGFPARLLNALASFTSVIEALREMATRGTVYDVLNELFTLTSIPLLLQAENTPESLAR 505

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
               +E  +++  F+     G  +        D +  +          E  + + ++   
Sbjct: 506 HENLQELLSMARDFADHNPDGGSLG-------DFLENISLASDYDETQESDNYVSLMTVH 558

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            S+ L F  + + GL E ++P                L+    E+   +    +      
Sbjct: 559 ASKGLEFPVVFITGLEERLFP----------------LHTYEPEELEEERRLFYVAMTRA 602

Query: 695 RH-LIYTRSLRENN----IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
           +  +  + +           +IAS ++  +      D      + G+   D     + TT
Sbjct: 603 QEKIFLSYAKSRYQYGQLHQSIASTFISEI------DASIVQSEGGRLLSDRRAPREATT 656

Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
            Q H   P    P  +     S S      + P
Sbjct: 657 PQNHAAAPAMRRPTTSGMAPSSASSPTAESSSP 689


>gi|119026323|ref|YP_910168.1| ATP-dependent DNA helicase [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765907|dbj|BAF40086.1| widely conserved ATP-dependent DNA helicase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 1356

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 62/530 (11%), Positives = 144/530 (27%), Gaps = 31/530 (5%)

Query: 158 IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA--SKYWTERLVELNASSPVGYQIALM 215
            +     +   L   K  +           L +          L     S        L+
Sbjct: 249 RMREYRAQCHQLCVYKTAQLAGTARKRDLLLDLVADYHAEKRALNMAEFSDFTIAAFQLV 308

Query: 216 RAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIW 271
                     +     +++     +    A L++ +  A+  + + V    D       W
Sbjct: 309 TRFPSIGATYRKRYTHVLLDEYQDTSTTQAALLTALFHADSTHRSAVNAVGDPFQSIYAW 368

Query: 272 NTITEKSTNITSSNTT-YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
              +  +  +   +    +T   Y+L        +  E    L      +  R    S  
Sbjct: 369 RGASPGAFRMLQHDFGHDATDKPYTLTVTRRNSRMVLEAANNLTKPLR-LPARRRGSSLM 427

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA----LRMSLDENK 386
                       +  E  +  +        +       ++AI++ +     L     +N+
Sbjct: 428 REVDVPPLANIDNAPEGTLGVLGYATFGQEIDAIVRFAKQAIALHMPTENELADGAKDNR 487

Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              AL+   +      +  L + G+   +     L        + +LL+ +    D  A+
Sbjct: 488 PHVALLFRSKTQMPAYEDALEQAGLTTLVVGQAALLERPEIKDILALLHVVCDHTDSAAL 547

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL----VLDRIATQKNN 502
             L+  P       +             A R        +            R   +   
Sbjct: 548 MRLLATPRFGLSADDLQALAGIAERLNTAQRYRALVSAGIVEADANPSDADIRATVRAYR 607

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPL----VTYKTNKNSTCGNLSISDWTKLTV 558
             VP+    +    +     LVD +L                +        + +  +  +
Sbjct: 608 DQVPNAVFLIDVLLRGDLRHLVDGVLSRTGAASVIHAGRVIQQVQRTAGHPLPEVVRTAI 667

Query: 559 TCLQ---NVCLDEHRKLPNLWFEEEGKTLSSLFSKII-------ETGSCIKANAIEWIDI 608
           T L    ++ L E  + P+          SSL + +        E  +    +   +I  
Sbjct: 668 TALGLDIDLLLAERMRHPDAGNRATSHAASSLDAMLSLVDTYLQEIAAQGTPSLRAFISW 727

Query: 609 ITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
           +  L D          +   + ++   +S+ L +D + + G+ +G +P +
Sbjct: 728 VDSLRDASDDNATAPDTPVDVVLMTVHQSKGLEWDAVAVVGMRDGTFPSS 777



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 83/848 (9%), Positives = 199/848 (23%), Gaps = 80/848 (9%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             + L  L+         ALMR  A      +   +           TA+    + +    
Sbjct: 529  KDILALLHVVCDHTDSAALMRLLATPRFGLSADDLQALAGIAERLNTAQRYRALVSAGIV 588

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
                   D  I   +     +    +   +       ++ +  +L               
Sbjct: 589  EADANPSDADIRATVRAYRDQVPNAVFLIDVLLRGDLRHLVDGVLSRTGAASVIHAGRVI 648

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
               +      +            +    +L  ++ +             +     A S  
Sbjct: 649  QQVQRTAGHPLPEVVRTAITALGLDIDLLLAERMRHPDAG---------NRATSHAASSL 699

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI--SAGIPLSTTLHSSILTSL 433
             A+   +D   ++ A                  +  ++            T    +L ++
Sbjct: 700  DAMLSLVDTYLQEIA------AQGTPSLRAFISWVDSLRDASDDNATAPDTPVDVVLMTV 753

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFP------EKYLSRAKNALELVALRGNKNSYDIMD 487
              +     D +A+  +                 ++     +           + ++  ++
Sbjct: 754  HQSKGLEWDAVAVVGMRDGTFPSSQGDHLSVKTDEDHPGGRRDGVWEPPEYFEKAHTWLE 813

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK-NSTCG 546
              S V   +    +        + +     E    L D  +       T +T   +   G
Sbjct: 814  DPSAVPVPVRADADILPRFPHDAPIGGNPVESLDGLDDAEVIDDEVFGTLRTMAVDDMEG 873

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF------SKIIETGSCIKA 600
                S +        + +  DE R           + L                     A
Sbjct: 874  MDPASLYLTQQEEYGRRLHADERRLAYVALTRARYEALLVYSGCNETSRDSRLAEGKKSA 933

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                +       ++G     +   + +  + G+  +  L+       G +   +      
Sbjct: 934  APSNFWLETRDSMNGIVTAVREPDNLSDDVDGSPHTLGLDLPDGYFVGEHARDFENAVVG 993

Query: 661  NPFLS--RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT----------RSLRENNI 708
            + + +    +  D  L          A     A      + +                + 
Sbjct: 994  DAWNTPLEPVSDDHTLPWPCDLSADVADKLRAAAEQVRAVESNEPNIAESTGTQGDVADE 1053

Query: 709  PTIASRW----LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
                S      L RL  L   D     +       +     D   +    +         
Sbjct: 1054 SATPSPETGNSLLRLAKLLVADEHLMPEPDAADAGESQDAFDEAVRAKGERILAAGRQNV 1113

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
               +  + S  ++     +    R I  +               GT FH      I    
Sbjct: 1114 TSLQARAGSMGERDSRAYWRGLVRPIPHVASP--------AAQLGTRFHAWAERFIMADA 1165

Query: 825  NKN-----------TPEINHLMKQ-IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            + +             +    +   I D+  + +N              K++        
Sbjct: 1166 DVDGIGGTEGAAGMAAQSRAELIALIGDTQVDADNGGVQSQDAQLRDERKLAAWQRRLVA 1225

Query: 873  KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI------DLLKSGFVDITDYKTGDNPKK 926
               +     +      + +  +G  + G  D +      +  ++    + D+KTG  P+K
Sbjct: 1226 SPWAKRRPAWAERQLVVDMPQLGTIVNGKLDAVFFGGLDETDETKRYTVVDWKTGVKPRK 1285

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
                K    QL L    L   +   +    +    Y         +    D++  + D+ 
Sbjct: 1286 PDEIKEKLAQLDLYRLLLA--AMEGVPLDAIDACLYY------VSEPHEADRELDAPDKT 1337

Query: 987  SEKSLKNL 994
             E+ L  L
Sbjct: 1338 EEEILAEL 1345


>gi|310826445|ref|YP_003958802.1| recombination helicase AddA [Eubacterium limosum KIST612]
 gi|308738179|gb|ADO35839.1| recombination helicase AddA [Eubacterium limosum KIST612]
          Length = 1190

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 94/930 (10%), Positives = 221/930 (23%), Gaps = 189/930 (20%)

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
            + L + LA +   ++      EDL  L  +                 K +  +  E N  
Sbjct: 318  LDLTEALAQL-AEMKR---PMEDLVGLTRD---------------FQKKYQLKKAEKNLL 358

Query: 206  SPVGYQIALMRAEA----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                 + + +R          ++     + +     +      ++  +    N       
Sbjct: 359  DFNDLEQSTLRILENPAIAAEVREQYAYVFLDEYQDTNDMQEAIIKRIVRDDN---YFMV 415

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE------------D 309
             D       +               +  T     L  L       +              
Sbjct: 416  GDVKQSIYRFRLADPTIFIGKYRAFSQETDALNDLITLSQNFRSCQGVVDGVNTVFEAIM 475

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
               LG ++ +   R      S  P   + +   +   ++  +         + E      
Sbjct: 476  SPALGEIAYDERARLYKGLDSEGPYVKTQVHVIENKTDEDTDP-------IVGEMPAVEM 528

Query: 370  EAISIAIAL--------------RMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
            EA  IA  +                 L + +    L+ +            +  GI    
Sbjct: 529  EARFIAREIQSRVGKPFYDTKTGEERLLQYRDIGVLMRSVAGRGDVYAKIFSELGIPAYF 588

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
              G     ++   ++ +LL+ I   +  + + +++  P                      
Sbjct: 589  DGGEQYYESMEIGVIMNLLDLIDNHHQDLPLLSVMTSP---------------------- 626

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                     I D  +     I   +          +  +E ++     +    Q +    
Sbjct: 627  ---------IGDFDTEECTEIRLFQKEGSYYAAAEKYKDEREDALAAKLKAFYQRLDAWQ 677

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                  +       +   T            ++ +    +  +  G            T 
Sbjct: 678  WDSRVMDIEDFLWKLYLDTGYYHFVGALPGGEQRQNNLRVLLKRAG-------DYKRSTL 730

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              +         +     D        E  + + I+   +S+ L F  + L G  +    
Sbjct: 731  RGLFYFIRFIERMKKHKYDLSPPGVLSESENVVRIMTIHKSKGLEFPVVFLSGTGKLFNK 790

Query: 656  KNTAKNPFLSRVM---------QSDLNLKTAEKYIGQAAHDFEMA---NGTRHLIYTRSL 703
            +   ++    + +         +    + T  K I    ++ E         ++  TR+ 
Sbjct: 791  RTRNRDILFHKDLGICPDYINLELRAKMPTLAKNICLEKNEMETLSEEMRLLYVAMTRAR 850

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
                +  +      RL    G     +LKK G       + L   +        K     
Sbjct: 851  ESLVVVGMVKNLESRLTAWSGPGDLYHLKKAGGLLDWIMQALLRNSAPEIAGEEKRRHLS 910

Query: 764  EAQPRTYSFSEIKQL----------------------------INDPYAVYAR------- 788
                  Y ++  + L                                Y            
Sbjct: 911  LPSYDVYFYTAEQSLKHHVSEDTVEELMEEAQAPSEAMWQEVCRRLSYRYPFEGQQELPG 970

Query: 789  --------------RILKLDFIPHF----------KKDPDRTDRGTLFHNIITELIKKRI 824
                            L +  IP             ++    ++GT  H ++  L   ++
Sbjct: 971  KMTVTEVKRLRIQAEALGVPEIPERVALPSFMVADAREITGAEKGTALHFMMQSLPLDKL 1030

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFV 883
                 +   L   + +           +  +   +  ++   F + E   +  + E++  
Sbjct: 1031 RAVAADTGALDGLLTEERQRLVTEELLLPELAETIDLEVIRRFFQSELGRRMLAAERVRR 1090

Query: 884  NIPA-----------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETA 929
             +P                    + + G  D     ++G   + DYKT        ++  
Sbjct: 1091 EVPFNYQYDPRKVLPDWQHADTPLVVQGMIDCCFE-ENGKWILLDYKTDRYFGEASRKQL 1149

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
                  Q++  A AL       +    VA 
Sbjct: 1150 IDQYRLQINFYAEALA-----NLTGMPVAE 1174


>gi|257456155|ref|ZP_05621352.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema vincentii ATCC
            35580]
 gi|257446241|gb|EEV21287.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema vincentii ATCC
            35580]
          Length = 1167

 Score = 78.0 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 90/866 (10%), Positives = 195/866 (22%), Gaps = 149/866 (17%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGST 236
                    +  + +       +           + A           K     I+I    
Sbjct: 313  QKIYALCSVLQERFIAEKKRRSILHFGDIAQLAVDALITDPDLRLFYKKQTHRIMIDEFQ 372

Query: 237  GSIPATARLMSTVANHPNGAI-------------VLPGLDCHIPTAIWNTITEKSTNITS 283
             +      L+  +A                    +    D       +         + S
Sbjct: 373  DNNSLQRDLLFLLAEKEARTDQSIPKPDELVPDKLFFVGDEKQSIYAFRGADVSVFRMLS 432

Query: 284  SNTTYSTHPQ--------YSLAKLLDFLDIKR------EDVKRLGNVSNEMYGRSMVISK 329
             +                 +   LL+F +         E  + L           + I  
Sbjct: 433  QDLRQGGSSASINLQTNYRTEPDLLNFFNTAFMQVFYSEVNQPLTGGVPAFEAEFIPILS 492

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDV--ALIEADNEREEAISIAIALRMSLDENK- 386
                P+     +   ++ K          V    IE      EA ++A  +     E   
Sbjct: 493  RDAVPNLMPQTDILFIDKKRFANPSDTDTVMFTPIEC-----EAYTLAQKIADIHAERYL 547

Query: 387  --------------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                             A++          +     F I         L      + + +
Sbjct: 548  VYDEALHATRPCTWSDFAVLLRASTHQAVYERFFRAFKIPYISVQQKGLFHDAPLNDICA 607

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            LL      ND    A  ++ P  +      +      +LE      N  + + ++ +   
Sbjct: 608  LLRLAVYPNDRAVYAQTLRSPFVRLS-DRSFTRLMLYSLEHEGQPFNPAAAEELEAEDRQ 666

Query: 493  LDRIATQKNNT----------HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                A                          E  + + +    +          +     
Sbjct: 667  YFLTACALFERIQGYIKKKSNAELITALWYDEGYRYILLTEPRYHRYLELYDYLFALAVK 726

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE--------- 593
            +     S+S +    ++ +      E  ++P     +  K ++   SK +E         
Sbjct: 727  ADEAKQSLSAFIDTLISYIHAEERIEDMEIPLEHGGDAVKIMTVHKSKGLEFPIVCIPDC 786

Query: 594  --TGSCIKANAIEWID---------------------IITRLIDGETVKPKIEKSSTLFI 630
               G       + ++                          L      K   E    L++
Sbjct: 787  GNAGKSETKEGMVFLHKDLGPVIHLPPETKNDPSANIFFEELRQEANAKHLAETKRLLYV 846

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM---------QSDLNLKTAEKYI 681
              T     L    +   G +    P+       + + +         +S   L       
Sbjct: 847  AVTRAKVRLVMSGVQETGCDAEDLPEFPRGLEEIRQQLVQPQQEEKNRSFFQLLLPAVSD 906

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW-LQRLLVLGGTDFFDNLKKRGQCYLD 740
              A   F        ++   +    +      R+ L     L       N        + 
Sbjct: 907  DIAGLHFA------EVLPLPASTVQHTAEDRQRFNLDETRALYRQAAEKNFPLAEPRVIP 960

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
             T+    T      + P P      +   +S   I        A  A+ +         +
Sbjct: 961  ATQFEKDTQWLRLSEAPLPSTEHTEKEIAFSADAISA---TDAASTAKPVDGNIGAEQGE 1017

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
             +   T+ GTL H  +                           ++  + P          
Sbjct: 1018 DELSSTEFGTLVHKAME----------------------ARFLDRPCILPAKYARE---V 1052

Query: 861  HKISHSFLEHE-EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
             K+  +FL     +  +            + +    + + G  D +   +     I DYK
Sbjct: 1053 EKLCAAFLSSPFGQKAAEASFRKTEYGF-LTLYEGKL-IIGQIDLLFEYED-TAYIIDYK 1109

Query: 920  TGDNPKKETAQKLIDPQLSLEAAALK 945
            T     ++   +    QL +   A++
Sbjct: 1110 T----DQKIYPEKHRKQLLIYKTAVE 1131


>gi|329946807|ref|ZP_08294219.1| hypothetical protein HMPREF9056_02122 [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526618|gb|EGF53631.1| hypothetical protein HMPREF9056_02122 [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 261

 Score = 78.0 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 21/220 (9%)

Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
            P     R + +L            T +GT+ H ++  L    +++   E+   +     
Sbjct: 3   CPLMFRLRTVDRLPEPGSL-----ATHKGTVVHGVLERLYDLPVSERRVEVALELLPGQW 57

Query: 841 SHFEKENL-------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
               +++         P     W      +  ++   E   +  +E     +  +     
Sbjct: 58  ESHREKSPEVMGLFEDPTQVETWLEEARGLIRTYFTLENPQR--LEPAERELFVQAETSD 115

Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            G+ L GF DR+D+   G + + DYKTG +P     ++ +  Q+   A  L       + 
Sbjct: 116 -GLLLRGFVDRLDVAPDGAMRVVDYKTGRSPGTRFVEEAL-FQMRFYALVLWR-----LR 168

Query: 954 CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
            R    L  + LK    +       +    +         
Sbjct: 169 GRAPTRLQLVYLKDGRVLTHDPRLAELERTETRLTHLWDE 208


>gi|85859302|ref|YP_461504.1| exodeoxyribonuclease V subunit gamma [Syntrophus aciditrophicus SB]
 gi|85722393|gb|ABC77336.1| exodeoxyribonuclease V gamma chain [Syntrophus aciditrophicus SB]
          Length = 1113

 Score = 78.0 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 95/966 (9%), Positives = 225/966 (23%), Gaps = 126/966 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSL 81
           +L   L +       +P  L    I V ++   + +  +     G  + +    P  + +
Sbjct: 14  VLAEKLADVLAGPLSSP--LTPEIIVVQSRGMERWVSMQLAAFHGICANVRFPFPR-RMI 70

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            D+             + NP ++  +        I+                + L     
Sbjct: 71  QDIFHAVLPG-WEAEQDFNPELAAWR--------IMSLLTVASSRPGFEPLAAYLHDDSQ 121

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW-WLLAADFLKIASKYWTERLV 200
                 L++ +A + D       +       +      + W             W   + 
Sbjct: 122 GLKRFQLSRQIARLFDQYLIFRPEMILNWEKRISDGDEYSWQA---------DLWRLFVE 172

Query: 201 ELNASSPVGYQIALMRAEAEH---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
           E     P   +++L          L       I I G +   P    +   V++      
Sbjct: 173 EGKIVHPAVLRLSLQDVMIRRGNQLSACLPERISIFGISYLPPFYLDIFLAVSSFMEVNF 232

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK----------LLDFLD-IK 306
            L          I ++            +         L++          LL  L  + 
Sbjct: 233 FLLNPSREFWFDIRSSREISREVKLVKGSVEKGMENEELSRSELYLEEGNSLLASLGTLG 292

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC------FSDVA 360
           RE    LG  S       +   ++ L                  +             + 
Sbjct: 293 REFWSFLGECSGREEEYYVEPGETSLLHAIQSDILNLREGGGEADADGREVMFSEERSLQ 352

Query: 361 LIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLE----------- 405
           +    +   E   +  +L   L+           ++T +                     
Sbjct: 353 IHACHSPMREVEVLHDSLLDLLEADPSLQPHDIVVMTPEIETYAPFITAVFETVDEDAPG 412

Query: 406 -LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV-------KHPLAKF 457
            + +  I   I     +S       L  +L+          + +L+       +  L + 
Sbjct: 413 LVDQPKIPYHIVDRATISGRPVLGGLLKILDLPLGRFAAGEVLSLLEVAAIRNRFGLTEA 472

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
              +     A + +       ++    + ++ +        +    +    ++       
Sbjct: 473 DIDQVSRWVADSGIRWGIDERSRLREGLPEIATNSWQWGLKRMLLGYALPARNNELFSGI 532

Query: 518 ELAVLL----VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                        +               S   + ++SDW  L         L +    P
Sbjct: 533 MPCETAEGSEARLLGILAEFTERLFLTAESLSQDRTLSDWGSLLDDISDRFFLGDEDSEP 592

Query: 574 NLWFEEEGKTLSSLFSKIIETGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
           ++    +  +      +         +        D             +      +   
Sbjct: 593 DIRNLRQLASDLKNLQEKTGFPEKISLAIVRSFLQDRFQATGADGGFLSRG-----VTFC 647

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
             L  R + F  + L G+N G +P+      F           ++             + 
Sbjct: 648 SLLPMRSIPFRVICLMGMNNGDYPRRPQTPSFDLMARHPRRGDRSRRNDDRYL-FLEALL 706

Query: 692 NGTRHLIYTRSLRENNIPTI--ASRWLQRLLVLGGTDFFDNLKKRGQ------------- 736
           +    L  +   +     +    S  +  LL      F        +             
Sbjct: 707 SARDTLYISYVGQSMEDNSRIPPSVVVSELLDYVRRGFVLKDCNIDELLITYHPLQAFSP 766

Query: 737 --------CYLDWTRKLDYTTKQP---------HYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                       ++ +                      +  P   A     +  ++    
Sbjct: 767 VCFTEESCRLFSYSEENRKAANTLLKRSSLTSIPGAEAERLPEDPAMATQATIRDLIAFF 826

Query: 780 NDPYAVYARRILK--LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
             P   + +R L   L       ++ +  D   L    I +L+ ++      EI     +
Sbjct: 827 RHPARFFLQRRLAVFLGEADIVLEENEHFDVEGLDRYGIEQLLMEK------EIETGHME 880

Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI--PAKMAIESIG 895
            +      + L PH   + +  F  +           +S    +      P  + +E  G
Sbjct: 881 EVYPVLAAQGLLPH-GAVGQSRFDALKRDICHFV---RSYKHILHSENIPPRDIDLEVAG 936

Query: 896 IHLTGF 901
             L+G 
Sbjct: 937 FRLSGR 942


>gi|256397096|ref|YP_003118660.1| ATP-dependent DNA helicase PcrA [Catenulispora acidiphila DSM
           44928]
 gi|256363322|gb|ACU76819.1| ATP-dependent DNA helicase PcrA [Catenulispora acidiphila DSM
           44928]
          Length = 806

 Score = 78.0 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 79/664 (11%), Positives = 185/664 (27%), Gaps = 82/664 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            S+     T +A  E+R    E+ G ++ ++  + +          A    +    P   
Sbjct: 109 GSILAITFTNKAAAEMRQRVEELVGPRARLM-WVSTFHSACVRILRAQAKTAG--LPSNF 165

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +I    +  RL+ +    L    K   P S L                   I  ++ E  
Sbjct: 166 SIYDTADSQRLMTMVLRDLEIDPKKTTPRSMLGQ-----------------ISKLKNELV 208

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG------YQIALMRAE 218
             +   +    +       A   L    + + +RL    A           + +      
Sbjct: 209 DHDTFSSRAQTE-------AERQLAQVYRLYADRLTAAKALDFDDIIMTTVHLLQAFPMI 261

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
           AEH  +     I++     +  A  +L+  +        V    D  +     NT     
Sbjct: 262 AEHYRR-RFRNILVDEYQDTNTAQYQLVKELVGQHEKRTV----DGDLVRPGLNTEDLPP 316

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
             +        +   +  A + + ++ +R+          ++              +   
Sbjct: 317 AELCVVGDADQSIYAFRGATIRNIIEFERDYP---DAKVIKLEQNYRSTQTILTAANAVI 373

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITAD 395
             N       +         +    AD+E  EA  +A     L  + +      A+    
Sbjct: 374 ENNKGRRAKNLWTDSGDGKLITGYVADDEHSEAQFVAEEIDRLSDAKETTYGGVAVFYRT 433

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R  +    R G+   +  G+            + L A+   +D +++  ++  P  
Sbjct: 434 NAQSRVFEEVFVRVGLPYRVVGGVRFYERKEVRDALAYLRALANEDDIVSVRRVLNTPKR 493

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G   +      +A E +                                    R ++E
Sbjct: 494 GIGEKAEESLERLSARERITF------------------------------GDALRRADE 523

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
              LA   V  +      +   +           +    + T    +    D+ +    +
Sbjct: 524 APGLAARSVKAVQGFTQMMDELREMAAEYGPAHVLEAILERTGLLQELQDSDDPQDETRI 583

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
               E   ++  F +    G        E+++ +  + D + +    +    + ++    
Sbjct: 584 ENLRELLAVALEFEQGQPEGR-----LPEFLERVALVADSDQIPDGEDHEGMVTLMTLHS 638

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---NLKTAEKYIGQAAHDFEMAN 692
           ++ L F  + L G+ +GV+P   +         +  L    +  A + +  +   +  A 
Sbjct: 639 AKGLEFPVVFLTGMEDGVFPHMRSMGDKKEMEEERRLAYVGITRAREQLYVSRSVYRSAW 698

Query: 693 GTRH 696
           G   
Sbjct: 699 GAPQ 702


>gi|328951182|ref|YP_004368517.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
 gi|328451506|gb|AEB12407.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
          Length = 900

 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 89/901 (9%), Positives = 198/901 (21%), Gaps = 83/901 (9%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T+ A  +L+S                  +           L  +    P  + 
Sbjct: 31  RVAAVTFTRAAAAQLKSRIYAGFSVLEREGAYYGYVPPPERLPRLFSLKEAVLAAPIHTI 90

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN---LADIIDIIETE 162
                EL RL+       PD       ++           ++L      L   +  +  +
Sbjct: 91  HGFFAELLRLVAPAMGLDPDFQVLSAGDATGVFREEVRALLYLRGEDPGLEAPLMHLYEK 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                +L         +W L  A   +  ++     L   +        +      A   
Sbjct: 151 RALARELRPAGPGAERLWALFRAAERRYLARLGGRALGPADVELRAVQMLTEPPNGALER 210

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++G    +++     + P   +    +        V+   D       +           
Sbjct: 211 IRGRYAHVLVDEYQDTNPLQGQAFEALEAAGVSIEVV--GDPKQSIYAFRNADVAVFRRA 268

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                         A L          V  L  ++     R         P   S     
Sbjct: 269 LRRGVVE-------APLAVSYRHAPGLVSFLNRLTQAFAERGWGFGPEEAPEVRSARSEG 321

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLAR 400
             +E      +   +++        + EA  +A  LR   D     ++ A++   R    
Sbjct: 322 GRIELHWVTGEAALAEL-------RQGEARVLAARLRALHDAGRPWREMAVLIQSRGSLP 374

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            ++     +G+    +        L    L   L   F     +++A  ++ P       
Sbjct: 375 ALEAAFEAWGVPFVTAQARGFYGLLEVRDLYHALRVGFDARAHLSLAAFLRGPFGGLSPR 434

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                 A            + +  + ++++            T       RL        
Sbjct: 435 AVDAILAAEDPLAALEAYPEVAARVAEIRTW--------VRQTAPFEALKRLVRTRFLGG 486

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
              ++ +       V     + S      I                 E            
Sbjct: 487 KSYLEWLSPAARANVDALLLEFSRNPPARIEALLARLEELRWADEAGEVPAGGE------ 540

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
                       +    +  +A + ++     +   + K     +               
Sbjct: 541 ------------DAVRVVTVHAAKGLEWPVVAVFDLSRKRAHPGAPVFVRPEDGRFATRE 588

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
                                               A +        +  A+     +  
Sbjct: 589 ------------------------DPDFTEYQKAWEAREAEEAYRLFYVAASRAAEHLIL 624

Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
                           +          +               +L      P  +R +  
Sbjct: 625 TGSVALKPDQEGRLAARFYGESWARTLWALEVDAWPEVRARRWELKEVPAAPRVQRKEVQ 684

Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
           PP             +      Y+  A +  + + +     DP+ +  G      I    
Sbjct: 685 PPAGVPALMRPVRPGR--YPPVYSPSALKAERAEALEVDCVDPEASAGGDARAVGILTHY 742

Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE-EKIQSSIE 879
               N    +  H                P           ++  ++      ++    +
Sbjct: 743 AIAQNWGPDDPEHFENLRAQEVMLAYA--PEEQERLLAEVRELLRAYRALLGRELPWPRD 800

Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
           + +  +P  +A+   G    G  DR+  +      + DYKT   P+ E        QL+L
Sbjct: 801 EDYPELP--LALPHAGTVWEGVIDRLYRVGD-RWYLEDYKTDRTPRPER----YAFQLAL 853

Query: 940 E 940
            
Sbjct: 854 Y 854


>gi|145225705|ref|YP_001136383.1| exodeoxyribonuclease V, gamma subunit [Mycobacterium gilvum
           PYR-GCK]
 gi|145218191|gb|ABP47595.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Mycobacterium
           gilvum PYR-GCK]
          Length = 1083

 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 90/887 (10%), Positives = 216/887 (24%), Gaps = 55/887 (6%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
             LL   L       P +P   A   + V  +   + L      + G+ S    I   + 
Sbjct: 11  TDLLADGLGAMLSDPPADP--FAEDLVLVSARGTERWLSQRLSHVLGRGSGQDGICAGVT 68

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                   A+L  +   +P   +      LA +           +               
Sbjct: 69  FRHPRSLIAELTGTREHDPWSPDAMVWPLLAVIDDCLAEPWCSTLGAHLGHFADGEEREL 128

Query: 143 AN--AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                  +A+ LA +     T+         L  +            L+   + +   + 
Sbjct: 129 RQGRRYAVARRLAGLFASYATQR------PRLLEDWLAGRTDGLDADLRWQPELYRALVD 182

Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
            + A  P       +    +      +  + + G T        L++ VA H +  + LP
Sbjct: 183 RVQADPPHVRHAETVARLVDSPTDLPER-LSLFGHTRLPVTEIELLAAVATHHDLHLWLP 241

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
                + T++ +          +S+         +L + L  L       + L   +   
Sbjct: 242 HPSDALWTSLRDVRDVIPRRDDTSHRRVGHPLLATLGRDLREL------QRCLPTDTVSD 295

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
                V     L          D +  +          V +        +   +   L  
Sbjct: 296 ESLGSVARPDTLLGWLQSDIGADRVRAEGRTHDAGDRSVQVHSCHGPARQVDVLREVLLG 355

Query: 381 SLDEN----KKKSALITADRNLARRVK----------LELTRFGINIDISAGIPLSTT-L 425
            L+++     +   ++  D      +                        A   L+ T  
Sbjct: 356 MLEDDPTLEPRDILVMCPDIEAYAPLIVAGFGLGDVVSGAHPAHRLRVKLADRALTQTNP 415

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF----------PEKYLSRAKNALELVA 475
              +   LL           +  + +    +  F                          
Sbjct: 416 LLGVARRLLELAGSRATAGEVLDVAEAAPVRARFGFSDDDLDAVGTWVRESNIRWGFDRD 475

Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            R       + +     +DR+      +         +    +++   V+   +    + 
Sbjct: 476 HRRPYGVDFVQNTWRFGIDRVLAGVAMSDDSRAWLDTTLPLDDVSSNRVELAGRLAEFVD 535

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
             +    S  G   ++DW     T +  +         +LW   + +   +  +      
Sbjct: 536 RLRDAVESLTGTAMLADWLARIRTGVSELTAVPD---SDLWQHSQLERELADIAAAAGVH 592

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
           +  +    +   ++ R + G   +    ++ TL +   +  R +    + L GL++GV+ 
Sbjct: 593 AGTELRLSDVRSLLDRHLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVF- 650

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIAS 713
                         +   +        +       A G     L+ T +           
Sbjct: 651 --PRVGVVDGDDALARDPMTGERDIRSEDRQLLLDAIGAATEKLVITYTGANEYSGQRRP 708

Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
             +  + +L   D   +   R + +     +          +   P             +
Sbjct: 709 PAVPVVELLDTLDVTTSSPVRDRVHTSHPLQPFDIANVTPGELGMPVGTPFTFD---PTT 765

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
                         R +L          D    D    F + +    +   +   P    
Sbjct: 766 LTAARATTGDREEHRPLLAEPLPAPPADDVALDDLIGFFRDPVKGFFRAL-DFTLPWDVD 824

Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
            +   I    +          +   +   +S +  +  E  + S+  
Sbjct: 825 GLDDAIPVDVDALQEWKIGQRLLDDMQRGMSPAQAQQAEWRRGSLPP 871


>gi|254497559|ref|ZP_05110348.1| DNA-dependent helicase II [Legionella drancourtii LLAP12]
 gi|254353217|gb|EET11963.1| DNA-dependent helicase II [Legionella drancourtii LLAP12]
          Length = 725

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 64/655 (9%), Positives = 155/655 (23%), Gaps = 126/655 (19%)

Query: 154 DIIDIIETEEKKWEDLHALKNEKY--------------GMWW--LLAADF---------- 187
            ++     E    E  H L +E                   W    A  F          
Sbjct: 96  RLLRRHYKEANLPEQFHILDSEDQARVIKRVIAALNLDSEQWPVKQAQSFINGRKDEGVR 155

Query: 188 --------------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKG 228
                         L      + +              +       ++       +    
Sbjct: 156 PQHVHTLHYGPGKTLVAIYSAYEQACQTAGVIDFAELLLRTHELLRDNPEILAHYRQRFQ 215

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            I++     +       +  +A    G+ VL   D       W     ++    +++   
Sbjct: 216 AILVDEFQDTNTIQYAWIRLLAG--EGSAVLAVGDDDQSIYGWRGAKVENIQQFANDFKG 273

Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
           +          +  L+        + + +N +   +                    +   
Sbjct: 274 TK---------IIRLEQNYRSTSTILDAANALITHNNS-----------------RMGKD 307

Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLEL 406
           +         + +  A NE EEA  ++  + M +++  +  + A++      +R ++  L
Sbjct: 308 LWTAGSAGEKILVFSAFNELEEARFVSERIMMEINQGVSADEIAILYRSNAQSRVIEEAL 367

Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
            R GI   I  G+            + L  +    D  A   +V  P    G       R
Sbjct: 368 LRAGIAYRIYGGLRFFDRAEVKDTLAYLRLLVNPGDDTAFERVVNFPTRGIGEKTLEDVR 427

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                E                                     ++   +  E+       
Sbjct: 428 HYAKSEQC------------------------------SLWQAAKTLLQSGEMPQRAGLA 457

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           + + +  +   + N      +  +S   +++        +   +    L   +E    + 
Sbjct: 458 LAKFVDLIEELQRNTVEMELDEQLSSVIQMSGLYAHFSKIKGDKSESRLDNLQELINAAK 517

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            F    +    +          +                 ++ ++    ++ L F  + L
Sbjct: 518 QFRYEQDEEEELPLVN----AFLAHASLEAGEMQADAHERSVHLMTLHAAKGLEFPIVFL 573

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL--- 703
            GL E           F  +    +      E+ +        M    + LI + +    
Sbjct: 574 VGLEE---------GVFPGKQSMEEPGRLEEERRLCYVG----MTRAMQKLILSYAEVRR 620

Query: 704 -RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
                     SR+L+ L      +     + +          +   T+      P
Sbjct: 621 QYGREEYHRPSRFLRELPQELLDEVRVKARFQSSAAPRSRAPVVSQTQAQAVGLP 675


>gi|116072446|ref|ZP_01469713.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp.
            BL107]
 gi|116064968|gb|EAU70727.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp.
            BL107]
          Length = 1217

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 87/770 (11%), Positives = 191/770 (24%), Gaps = 55/770 (7%)

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALM--RAEAEHLM--KGTKGPIIIAGSTGSIPAT 242
             L+   +   ER     A +  G   A+     + + L   +     +++     + P  
Sbjct: 354  LLERGLQELRERRARRGAITFAGLLAAMDPGDGQVDWLAPLQERYRAVMVDEFQDTDPVQ 413

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             RL+          ++L   D       +      +            H       LLD 
Sbjct: 414  WRLLQRTFGDRINHLLLLVGDPKQAIYRFRGGDLGTYLKARQQVDRIDH-------LLDN 466

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                   ++ L  +      RS +   +        +         +       +    +
Sbjct: 467  FRATASLMEGLNTLMAPGMPRSHLEIPAVRAQAIDQVSLKTAALQLLELELDTPASRTAL 526

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            E     + A  +   L      +     ++ +    A  ++  L   GI   +     + 
Sbjct: 527  EQQLPHQLAALVLEILEGPDQPDPSDLCVLVSRHQQATDLRRALGAAGIPSRLVTQGDVL 586

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             +  + ++  LL+A+    D   +  LV  PL  +         A + L     R  + +
Sbjct: 587  ESEAALVVQRLLDALADPGDDRCLRLLVSSPLMNWSLEAMENEGALDQLAEQL-RLWERA 645

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
               + L   +   +  Q+        +     +     V    H     +        + 
Sbjct: 646  LPKLGLMGCLAQLLEGQRTADLSERGRMLGDLQQVGRLVQEAMHRQGLDSATAANWLRRE 705

Query: 543  STCGNLSISDWTKLTVTCLQNVCLD--EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                   + +  +       +       HR     +       L     +          
Sbjct: 706  RLHPTTPVPEARQPHSDQADHAVAVVTVHRSKGLEYPVVICPYLWQAPRQESGPLWRETG 765

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            +   +I I +    G     +    +           +    + ++         +    
Sbjct: 766  DGRWFIAIDSHWGKGHRAAQQAADDAMAEAERLAYVAMTRARSQLMVVWVRSTGQEGAPL 825

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQR 718
              +L             +  + Q + D      +     +  R L +  +P+   R L  
Sbjct: 826  PCWL-------FGADAIDDSVDQFSDDRLDLALSERGVSLLRRVLPDPLLPSQRWRSLPS 878

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ- 777
               LG  +    + +                   H +   P P  E    T S    +Q 
Sbjct: 879  EQPLGLGETPGRIDRSWGRASYSAWISAPVDPVVHEQGRDPDPGAEECSLTGSDLWPEQG 938

Query: 778  -LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI----- 831
             L + P    A   L   F        +  D+  L H+ +  L +  I+           
Sbjct: 939  PLADFPRGAVAGDCLHRIFEQIPFHAAEADDQCPLDHSKLDGLREAVIDAELRRAGLDCN 998

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLF--------------------HKISHSFLEHE 871
               M      +  K  L   ++ +                           +  +F    
Sbjct: 999  LQSMVMEGLDYVLKTPLGGPLEQLQLSQLGLKQRIHELSFDLPVGHVSTKDLVQAFRRSP 1058

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG-FVDITDYKT 920
                       +   A + + S G  LTG  D +          + D+K+
Sbjct: 1059 NARFGGRYIDHL---ATLGVNSRGF-LTGSIDLVFCDPHQSRWWVLDWKS 1104


>gi|91202090|emb|CAJ75150.1| similar to DNA helicase [Candidatus Kuenenia stuttgartiensis]
          Length = 641

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 80/691 (11%), Positives = 180/691 (26%), Gaps = 115/691 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKF---TADLLLSYNLNPP 102
            +     T +A  E+R    ++   + + +  + +      E        L    +    
Sbjct: 53  RILALTFTNKAAAEVRGRVEKLVPGELSRV-RLTTFHSYAAELLQQHGNHLSFRPDFQIL 111

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            ++  R   L  ++   R  +   + D +                 A  L   +  +  +
Sbjct: 112 SNDADREALLDDVLGRLRKDMAYSLPDHFK----------------AAQLLPAVTRLLEQ 155

Query: 163 EKKWED----LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
               +     L     E            L      + E L   N+          +   
Sbjct: 156 CIPPDQAAVVLQQANVENAIP--------LARVYAAYREALHLTNSLDFPSLIAESLDLL 207

Query: 219 AEHLMKGTK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            ++             I+I     +  +  R++S +A  P+ + +    D       WN 
Sbjct: 208 DKYPFLVKHIRKVYKHILIDEFQDTNHSQYRILSLIAQ-PDPSTLFVVADDDQIIYQWNG 266

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
            + +                  +  L D   +    +         +   +  + +  L 
Sbjct: 267 ASPE-----------------RIKALRDDFGVSELQLPENYRCPPLVIELANALIEKNLN 309

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393
                     + + +  ++      V +   D+   EA  IA  +     + +   A++ 
Sbjct: 310 RSAGKKPLKAVKQGEGGDV------VRVFRFDDVDGEAEWIAQDIAKKTPQLRTDCAVLA 363

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
             + L      +L   G+ +  +A      +    +L ++L  +    D  ++A L K  
Sbjct: 364 RTKKLLDLAGRKLEGAGVPVYYAARKDEFKSAPLRMLHAILRLVNSTEDKQSLARLSK-- 421

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                              +        S    D K L+   +   K    +     RL 
Sbjct: 422 ------------AFYELEGISIELAPVLSRASADGKDLLRCWLDEVKRRDALEEETLRLL 469

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           E   +  +                      +      +D         Q     +     
Sbjct: 470 ETGIKPLLN---------------------SLNYRDFADKLLKWAEACQQTSRPDE--NA 506

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
              F+EE +    L ++I +       +  + +  +       T K   +    +     
Sbjct: 507 FNEFDEEREVWKLLLAEITKKFDGEDVSLHQLLHEL-----DLTSKTLPKPPEAVPCFTI 561

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             S+ + F  + L GL E            L           + E    +  + F     
Sbjct: 562 HASKGMEFGQVYLMGLVEDQ----------LPSWAAVKKGDNSLEMQEER-RNCFVAITR 610

Query: 694 TRH-LIYTRSLRENNIPTIASRWLQRLLVLG 723
            +  L  T S +    P   SR+L  + +  
Sbjct: 611 AQESLTLTFSAQVFGWPKQPSRFLSEMGIEL 641


>gi|113954443|ref|YP_729463.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9311]
 gi|113881794|gb|ABI46752.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9311]
          Length = 803

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 78/766 (10%), Positives = 189/766 (24%), Gaps = 119/766 (15%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF----IEITGKKSTILPIIKSL 81
           L   +         +P   A +     T +A +E++        +   +     P   +L
Sbjct: 36  LTHRIAHLIGEHGADP---AQILAVTFTNKAAREMKERLELLLAQRLAQSQFGQP-WSTL 91

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             V + +    +         +     L   AR++    +K  D   +    +       
Sbjct: 92  PPVEQRQLRTRIYREITKELWIGTFHALF--ARMLRFDIDKFKD--PEGLTWTKQFSIYD 147

Query: 142 PANAIWLAKNLAD-----------------IIDIIETEEKKWEDLHALKNEKYGMWWLLA 184
            A+A  L K +                    I   + +    +DL A    +        
Sbjct: 148 EADAQSLVKEIVTQELQLDPKRFEPKKVRWAISNAKNQGWSPDDLEANAEGQR------- 200

Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-----TKGPIIIAGSTGSI 239
                   + + + L   NA       +  +R   ++             +++     + 
Sbjct: 201 GKLSADVYRRYRKALAANNALDFDDLLLLPVRLLQQNEQVRGYWFRRFRHVLVDEYQDTN 260

Query: 240 PATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
                L+  +          +  +G  V    D       +             +     
Sbjct: 261 RTQYELIKLLVTDGKEPQQVDDWSGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD-- 318

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
                            +    +     ++       +      +     N++ ++  + 
Sbjct: 319 -----------------KAPDDVTRTMVKLEENYRSTATILEAANALISNNSERIDKVLR 361

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLEL 406
             +     ++L   D+E  EA ++   +RM      D + K  A++      +R ++  L
Sbjct: 362 PTRGEGELISLTRCDDEIAEAEAVVHRMRMMEAANPDLSWKDMAVLYRTNAQSRAIEESL 421

Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
            R+ I   +  G+          L   L  +    D +++  ++  P             
Sbjct: 422 VRWRIPYVVVGGLRFYDRREIKDLLGYLRLLINPADTVSLLRVINVP------------- 468

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                     +       I  L            +    P     L        +   + 
Sbjct: 469 ----------KRGIGKTTIQRLTDAANQLGIPLWDVVSDPEAVRSLGGRSARGLLQFCEL 518

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           I        + K   ++   +  I +  + +    + +              +E      
Sbjct: 519 IN-------SMKERIHAATPSELIQEVMEKSGYVSELIADGSDEAEERRRNLQELVNAGL 571

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            + +  E G      A                  K   +  + ++    S+ L F  + L
Sbjct: 572 QYQEENEEGDLEGFLASA--------ALASDADSKDTAADRVTLMTLHSSKGLEFPVVCL 623

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
            GL +G++P   + +   S   +  L      +   +        +          +R  
Sbjct: 624 VGLEQGLFPSYRSLDDPASLEEERRLCYVGITRAKERLF-----ISHASERRLWGGMR-- 676

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
             P + S +L  L                        +L    +  
Sbjct: 677 -EPAMPSVFLSELPEGLVQGDVPQSGGAALRREQRLERLTRVDRDD 721


>gi|330837380|ref|YP_004412021.1| hypothetical protein Spico_1435 [Spirochaeta coccoides DSM 17374]
 gi|329749283|gb|AEC02639.1| hypothetical protein Spico_1435 [Spirochaeta coccoides DSM 17374]
          Length = 1013

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 77/710 (10%), Positives = 165/710 (23%), Gaps = 103/710 (14%)

Query: 361 LIEADNEREEAISIAIALRMSLD---ENKKKSALITADRNLARRVKLELTRFGINIDISA 417
           L    N+ +E   +   LR   +     ++ +  +  D  L   ++ E     + + +  
Sbjct: 254 LHVFANQSQEVGDVVRRLRTLAEKGVPAREMAVTVPVDEILVAHLREEARLHDLPLRLIQ 313

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
           G            T L           A+  L+      +       +    A+EL    
Sbjct: 314 GFSPLEHPAGRFFTRLKAVYDTAFSLQAMKDLLLDIGIPWRDIILQRNLLARAIELRIEG 373

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
           G+ +S         +       + +      +     +  E  V L     +    +++ 
Sbjct: 374 GDVHSASHDAWFQRLSW----SEPDASGTDARMDTGMDAGEAPVSLRSWYGKFRGTVISV 429

Query: 538 KTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
              + S      +S +  +                    +  E  + ++          +
Sbjct: 430 MEAETSQDIRARLSYFQQEFFCDERWEAAATAEATAVYTFCMENLEKVAQALQ------T 483

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                      +    I      P+      +++     + ++     I  GL   V   
Sbjct: 484 AGITRYHGLFSLFLSHISQTRYVPQSSGGIPVYVWPQSATLMIPHHYAI--GLGHDVTLV 541

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD----------------------------- 687
           +     FL   + S    +  +      +                               
Sbjct: 542 SDNSGDFLPETVLSASVREEHDMTAALFSLYRSCVMEGRLSLSSQGYNGVQLPPSCMVES 601

Query: 688 -FEMANGTRHLI--------YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                  +              R  + +   ++ S          GT       +R    
Sbjct: 602 GLVRQMSSWETYDSWKDELKLWRGEKTDYNYSMLSGQRAWYRDNAGTVLTRMSNERDVAV 661

Query: 739 LDWTRK-LDYTTKQPHYKRPKPFPPLEAQPRTY---SFSEIKQLINDPYAVYARRILKLD 794
                  +                 LE   +     S ++I    + P++   +  + + 
Sbjct: 662 SGMDNPGIFSPLFHECDHEHDHEHSLERGGKPLLTLSSTQIDAFASCPFSWALKWGMGVR 721

Query: 795 FIPHFK-KDPDRTDRGTLFHNIITELIKKR--------INKNTPEINHLMKQIIDSHFEK 845
              +++    D    G L H +     +K           ++      L+       F +
Sbjct: 722 DDQNYEVPRMDHRFMGRLIHKVYQLFFEKVTAMTGLYDGERHKDTYQKLLLSTWGDEFMR 781

Query: 846 E-----NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
                    P      ++   +     L+ EEKI S           +M     G HL G
Sbjct: 782 LSHSNDAPSPPTLRWIKNTLDRQLPQILDQEEKIFSGTLSWEFEKNLEMTNADKGYHLVG 841

Query: 901 FADRI--------------------DLLKSGF-VDITDYKTG-----DNPKKETAQKLID 934
             DRI                    D    G  + + DYK G                  
Sbjct: 842 KIDRIVLLGASLTDVRNMKTGAENNDAAVEGRALAVVDYKKGNLKNLRPGDYRKEGGPPS 901

Query: 935 PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
            QL +    + +         + A   Y  +K                 D
Sbjct: 902 FQLPVYRRLVASQL-----AARTALAAYYSVKDGSYSIIWDEKGDGQPVD 946


>gi|191637996|ref|YP_001987162.1| ATP-dependent DNA helicase [Lactobacillus casei BL23]
 gi|190712298|emb|CAQ66304.1| ATP-dependent DNA helicase [Lactobacillus casei BL23]
 gi|327382072|gb|AEA53548.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei LC2W]
 gi|327385216|gb|AEA56690.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei BD-II]
          Length = 751

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 75/624 (12%), Positives = 168/624 (26%), Gaps = 97/624 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVS 104
           ++     T +A +E+R    ++   +      + +   +       D+  L YN    ++
Sbjct: 56  NILAITFTNKAAREMRERVGKLVDAEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIA 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +    L L + I      L D   D     P              K++   I   + E  
Sbjct: 116 DPAEQLTLVKHI------LADFNLDPKRYDP--------------KSILGAISSAKNELV 155

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
             +       +    +  + A         + +RL    A       +  +    +    
Sbjct: 156 DPQ--TYANEQANSPFTKVVAQ----VYAEYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209

Query: 225 GT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I +     +  A  +L+  +A   +   V+   D       W     ++ 
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYQLVHMLAEGYHNLCVV--GDADQSIYGWRGANMQNI 267

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      +P+  +  L       +  +    NV      R                
Sbjct: 268 LDFKK-----DYPKAQVILLEQNYRSTKTILSAANNVIQNNQNRQAK------------- 309

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADR 396
                    +    +    +    A +E +EAI +   +   + +N +     A++    
Sbjct: 310 --------TLWTENREGDKITYYRAQSETDEAIFVIRRIEAEIADNHRKYGDFAILYRTN 361

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++    +  I   +  G             +    +    D M+   +V  P   
Sbjct: 362 AQSRAIEEAFVKSNIPYKMVGGHKFYDRKEIRDALAYFRLVVNPEDDMSFNRIVNEPKRG 421

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G        A                             A + + + +    +      
Sbjct: 422 IGNTSVEKLEA----------------------------FANEHDWSLLEAAANAELSPI 453

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
              A   +    + I  L T + + N T    +I + +    T      L+   ++ NL 
Sbjct: 454 AGKARGQLAKFGKMIQQLGTRRKDLNVTEMMQAILEDSGYLSTLRAAHNLEADTRIENLE 513

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                        +     S I      ++D +  L          E +  + ++    +
Sbjct: 514 ELLSVTQGFDSRYQPENEDSDI------FVDFLAELALLSDQDDVEEDAQEVTLMTLHAA 567

Query: 637 RLLNFDTLILGGLNEGVWPKNTAK 660
           + L F  + L G+ EG++P + A 
Sbjct: 568 KGLEFPVVFLVGMEEGLFPLSRAS 591


>gi|152981098|ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacterium sp. Marseille]
 gi|151281175|gb|ABR89585.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 1083

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 80/786 (10%), Positives = 184/786 (23%), Gaps = 110/786 (13%)

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIP 240
                + +     E         +    R           +  +      +++     + P
Sbjct: 359  AAYLEIYQAVKAEQRVFDFADLEWQAYRLLTNEEHAAYLQSRLDARYKHVLLDEFQDTNP 418

Query: 241  AT----ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
                     +    N  +   +    D       +     +  +                
Sbjct: 419  LQWSIVQAWLKAYGNETDRPSMFVVGDPKQSIYRFRRAEPRVFSAAREVLVAQGADFLRT 478

Query: 297  AKLLDFLDIKREDVKRLGNVSN---EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
             +         + +      +         S      +  P     ++  ++ +      
Sbjct: 479  NQTRRNARGIVDVLNESFRANPIYTAQTTLSNEAGAVWQLPLVQQEKSEKVVWSPANMRD 538

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRF 409
                     E     +E  ++A A+  + +           L+   R      +  L   
Sbjct: 539  PLTEPREEEEDARRLQEGRAVAQAILRAREVTPGTKWSDVMLLVKKRTHLSAYERALREA 598

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            GI         L  +L  + L +LL  +   +D +A+A ++K P+      +      + 
Sbjct: 599  GIPFASDRRGGLLESLEVADLIALLTFLITPHDNLALAHVLKSPIMGATDNDLIALALRA 658

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                                 L    + ++     V   +  L    +     L+D IL 
Sbjct: 659  EKTWWG--------------RLHQAELNSEVLQRAVSLLEKWLELAARLPVHDLLDRILH 704

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                +  Y    +       +++    T   L    LD  R      F +  + L     
Sbjct: 705  EGDVVARYAQAASPLVRGQVLANIEAFTELALN---LDAGRYPSLPKFIDALRRLQKSAD 761

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                  + I A+                            IL    ++ L  D ++L   
Sbjct: 762  SDAPDEAEIDASL-----------------------DAARILTIHGAKGLEADIVVLLDA 798

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
            N          +  +    + + +        G+ A       G        +  E    
Sbjct: 799  N---HSDPARDDYGVLCEWKQEADAPNHFSVFGRQAE-----RGAARDYL-FAEEEQLKT 849

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
                  L             +     +         +       +             + 
Sbjct: 850  QEDWNLLYVATTRAKKLLIVSGVADAR------SASENGVADGCWYARFQGAEEPELDQR 903

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT-DRGTLFHNIITELIKKRINKNT 828
               S++K     P A+++   L L+             + G   H ++  L +    +  
Sbjct: 904  VLVSDLKLEAGFPLAIFSPPPLPLEQAEIPAAFSSAEIEEGIALHALMERLTQTWPVQIH 963

Query: 829  PEI--------NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
                       +  + +++    +     P +       F    H F  +E +I SS   
Sbjct: 964  AAPVLAKWLPCSRELAEVVRVQADTILAQPELQRF----FDPAQHRFARNEMEIVSSAGV 1019

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
                                  DR+ +     + I DYK       ++ +     QL+  
Sbjct: 1020 A-------------------RFDRVVMFDD-ELWILDYK---RNLFDSERVAYAAQLARY 1056

Query: 941  AAALKA 946
              A + 
Sbjct: 1057 RLAAQD 1062


>gi|91788136|ref|YP_549088.1| UvrD/REP helicase [Polaromonas sp. JS666]
 gi|91697361|gb|ABE44190.1| UvrD/REP helicase [Polaromonas sp. JS666]
          Length = 1095

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 82/819 (10%), Positives = 193/819 (23%), Gaps = 112/819 (13%)

Query: 160  ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE- 218
            + ++     + A +  +        A   +     +T    E         + A +    
Sbjct: 335  QAQDLALRAVAACQQHEAWTHQQRMARLTRALIAQFTGLKRERGWVDMNDVERAALVMLG 394

Query: 219  -------AEHLMKGTKGPIIIAGSTGSIPATARLMSTV----ANHPNGAIVLPGLDCHIP 267
                    +  +      ++I     + P   + +       +   +   V    D    
Sbjct: 395  DPVLSGWVQERLDARIKHLMIDEFQDTNPLQWQSLYAWLIGYSGAGSAPSVFLVGDPKQS 454

Query: 268  TAIWNTITE--------KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN---- 315
               +                     +     H + +   ++D ++      +        
Sbjct: 455  IYRFRRAEPQVFRAAQAFVVEGLGGDLLSCDHTRRNAEAVIDTVNAAMATARAADGYEGF 514

Query: 316  -VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                   GR     +    P   D     +   +        +   L E      EA+  
Sbjct: 515  REHTTASGRIGAAGRLPPIPRQKDTDEAALAGPESGWRDSLTTPRELPEETLRTREALQA 574

Query: 375  AIAL--RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
            A  +  +++         +++  R     ++ EL    I   +     L        + +
Sbjct: 575  AAWISGQLASGLKPSDIMVLSRKRAGLLPLQDELRALHIPAQVGEKTDLIDCCEVLDVVA 634

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            LL+A+      +++A  ++ PL                                 L+   
Sbjct: 635  LLDALVSPQHDLSLARALRSPLFGVADAGLVQLALLQRE--------LRMPWYQVLQKTE 686

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            L     Q     +  W+  L +     A+  +      +   V             ++  
Sbjct: 687  LLAPELQGPGAVLTRWKGWLDQLPPHDALQSIYDDGDVLARFVAAAPAAQRGTVLANLRA 746

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
               +    L             +   + G TL+   +   +    +  +  + ++    L
Sbjct: 747  LLGV---ALDRDGGRYATPYAFVRALKAGGTLA-PAAVSNDAVRLLTIHGAKGLEAEAVL 802

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            +       +   S  + +       +     + L   +             L    + +L
Sbjct: 803  LLDTDTLERNADSMGVLV-DWPGEAVAPHKFVFLVSESRPPACAEKVLADELLARKREEL 861

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
            N              +      RH +   S+  +   +    W QRL  L G      ++
Sbjct: 862  NAL------------YVALTRARHTLVISSIEPHRETSE--SWWQRLYGLVGELPAPVVE 907

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
              G               Q  Y    P  P  A  +    +                   
Sbjct: 908  SIGP------AAASAAKSQIFYLPELPVLPDTAIHKVLPDT------------------- 942

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                    +D      G   H ++            P     +  +             +
Sbjct: 943  -----PEDEDSTVARVGKAMHRLLEW--------GGPFSAQQLAAVAREF--------RL 981

Query: 853  DIIWRHLFHKISHSFLEHE-EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS- 910
                      ++   L  E     +     +      +  +   + L    DR+   K  
Sbjct: 982  SPAQAARAGGLAERILTGEGAWAWNPNAVAWQGNEIDLVYQGQPLRL----DRLVQRKDA 1037

Query: 911  ---GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
               G   + DYK+   P    +Q  +  Q+    AA++ 
Sbjct: 1038 GHEGHWWVLDYKSAGAP---QSQPALLAQMQTYRAAVQQ 1073


>gi|58584094|ref|YP_203110.1| exodeoxyribonuclease V gamma chain [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58428688|gb|AAW77725.1| exodeoxyribonuclease V gamma chain [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1168

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 106/959 (11%), Positives = 226/959 (23%), Gaps = 121/959 (12%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
            E  R  P  PLL   V + +P     + L+S      G  + +     + G+ V     
Sbjct: 57  QELRRPMPGQPLLQPEV-VLIPQVAMRRWLQSTLAAEHGVAANL--EFLTPGEFVARALE 113

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
            +L  + +     +   RL                    L P +             LA 
Sbjct: 114 RNLGAADDDLDMATTQWRL-------YATLQSDLGRDAALAPLADYLADGDALKPWALAG 166

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            L  + +  +   + W            + W   AD     ++ W               
Sbjct: 167 ELGSVFEKYQAWRRDW-----------LLRWEAGADPDDPQARLWRSI--ATGRQYRARR 213

Query: 211 QIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
               +   A       +G    +         P   R+++T A        LP       
Sbjct: 214 IGHYLDRHARADGPLPQGLPPRVFAFAILNISPDVLRVLATQARVGTLHFYLPTPTQGYW 273

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKL----------------LDFLDIKREDVK 311
             +      +  +               L                   +  L        
Sbjct: 274 GDLQTLRQRRREDGAVQLFAEHVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEITAYAD 333

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
            L +    +    +  S           R    +   +P +      + +        E 
Sbjct: 334 PLDSGRRTLADGGLGDSLLRRMQSDLFHRRAPAVPALLPAVNLHDPSLQVHACHTRLREL 393

Query: 372 ISIAIALRMSLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDISAGI 419
             +   LR  LD+         ++ A+++ + +        +         +   ++   
Sbjct: 394 QVLHDQLRALLDDPRFDPPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYALADAS 453

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY--------LSRAKNAL 471
           PL++   + +  +LL           I  L+                        A  A 
Sbjct: 454 PLASEPLAEVFLTLLGLPIARFGLHEILDLLASAPIAAAAGLDEAGLERLRSWLHAAGAR 513

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
             +     +      D        +                               L  +
Sbjct: 514 WGLDAAHRRQHQAPGDDAYTWRFALDRLLLGHASGADDDIDGVAPWPQLEGSALAALDTL 573

Query: 532 TPLVTYKTNKNS-TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
             L+       +     ++  +W +  +  L+ +              +  +T+   F++
Sbjct: 574 LRLLRVLERHQAVLADAMTPVEWRERLLGLLEALIPTTPTAPRAQRALDRLRTMIDQFAR 633

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
                        E +      + GE+       +  +     +  RLL F  + L G+N
Sbjct: 634 DAVRADYAGKVPAEVVRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRVICLLGMN 693

Query: 651 EGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
           +G +P+             L    +   +  T E         F  A    +L Y  +  
Sbjct: 694 DGDFPRRDPAAGLNRLTAELGTDRRRHGDRSTREDDRFLFLQLFASAQEVFYLSYLGADA 753

Query: 705 ENNIPTIASRWLQRLLVLGGTDFFD-------------------------------NLKK 733
            +      S  +  LL                                           +
Sbjct: 754 RDGSVREPSVLVSELLSSAAHYHAASNALDTLVVRHPLQPFAAAAFGALGDESDAGADPR 813

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS----EIKQLINDPYAVYARR 789
           R      W   +D    Q     P     L A       S    E+++L  DP   + R 
Sbjct: 814 RFSYRRQWRPAVDSLVGQRQPLAPWVAGALPADDTALQASVSIDELRRLFADPAGQFLRH 873

Query: 790 ILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
            L +       +D D        RG   + +  ++ +  +  +T  +   ++        
Sbjct: 874 RLGMRLPDPGGEDSDLEPLLAPTRGLDQYGLQQQVFEAALAGDTEGLYERLRA---RALL 930

Query: 845 KENLPPHIDIIWR-HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                    +  R       + +F +   +  +   +        + ++   I L    
Sbjct: 931 PSGPLGRRQLDERVAQLRPYADAFRQWRGQSPAESRR--------LQVQIGDIELHARV 981


>gi|197123847|ref|YP_002135798.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196173696|gb|ACG74669.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 671

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 74/716 (10%), Positives = 155/716 (21%), Gaps = 106/716 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             +     Y  +  +    V     T +A  E+R     + G             DV   
Sbjct: 34  RVIAHRVAYLLVQGVDPEQVLAVTFTNKAAGEMRERVAALAGPPGV---------DVFVS 84

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
            F +  L         + + R   +            D    L         +S  +  +
Sbjct: 85  TFHSFGLWLLQQEHEAAGLPRRFAIC-----------DAGDQLALVKRCMREVSVDDRKF 133

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            A  +  ++   +   KK                             + + L  + +   
Sbjct: 134 DAHRVLSLLSRAKNAGKKRIVPREAGQGDDYDLVAA------EVYPRYEKALRAMRSVDF 187

Query: 208 VGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                  +   A         +     +++     +  A   L+  +A       V    
Sbjct: 188 DDLIARPVAMLAHDPALRARCQERFRYLLVDEYQDTNAAQLELLKLLAGERRN--VCAVG 245

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       W     K+      +                            G     +  
Sbjct: 246 DDDQAIYGWRGAEVKNILRFERHFP--------------------------GAKEVRLEQ 279

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                       +    +N       +    +    V ++    E +EA  +A  +    
Sbjct: 280 NYRSTGHILACANAVIAKNAARKAKALFTAGEAGEPVRVVAMSEEEDEARFVAEEIARQR 339

Query: 383 DE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
            E       A++     L+R  +       +   +  G           L + L    + 
Sbjct: 340 GEGRPWSHFAVLFRLNALSRPFEEAFREASMPYKVHGGPAFFDRSEVRDLLAYLKLCVQP 399

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
            D ++++ +V  P                        G+ +   + D        +    
Sbjct: 400 EDDVSLSRVVNVP--------------------PRGIGDTSMERVHDWAIPRKLHLLEAM 439

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                     R + E     V LVD                 +    + +    +  V  
Sbjct: 440 RRAAEIPDLPRGAAEKIGAFVALVDRFQARFRE-GPVSEAARALVAEVDLFSHVRAGVQS 498

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
           L+            L   +               G   +         + RL      + 
Sbjct: 499 LEAGSRRVDALEGLLRSLD---------------GYVQRTARPSLATWLQRLALDSREEE 543

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
                  + ++    ++ L F  + L G+ E   P    +        +  L      + 
Sbjct: 544 DPSGEGGITLMTLHAAKGLEFPVVFLVGVEEDYLPCAGIQGEARDLDEERRLAYVGITRA 603

Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
             +       A         RS R   +P   SR+L  L                 
Sbjct: 604 RERLYLTRVAA---------RSKRGKLLPRTPSRFLDDLPPAAHEKVDPAALAAPP 650


>gi|320450685|ref|YP_004202781.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
 gi|320150854|gb|ADW22232.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
          Length = 621

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 75/719 (10%), Positives = 182/719 (25%), Gaps = 148/719 (20%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
           P S   R ++        +       ++P     VT    TK+A  E+R   + + G+++
Sbjct: 23  PGSGKTRTVV------HRIARLIRKGVDPET---VTAVTFTKKAAGEMRERLVHLVGEET 73

Query: 73  TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
                  +   +          +              +  A        ++ + ++    
Sbjct: 74  ATKVFTATFHSLAYHVLKDTGTV-------------RVLPAEQARKLIGEILEDLQAPKK 120

Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
            +      +                 ++       +L AL    +  +   A D    A 
Sbjct: 121 LTAKVAQGA--------------FSRVKNSGGGRRELIAL-YTDFSPYIERAWD----AY 161

Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMK--GTKGPIIIAGSTGSIPATARLMSTVA 250
           + + E    L+    +   +  +  + +   +       +I+     +      L+  + 
Sbjct: 162 EAYKEEKRLLDFDDLLHQAVHELSTDIDLQARWQHRARFLIVDEYQDTNLVQFNLLRLL- 220

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                  ++   D +     W     +       +      P  ++ KL           
Sbjct: 221 -LTPEENLMAVGDPNQAIYAWRGADFRLILEFKKHF-----PNATVYKLHTNY------- 267

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                       RS     +      +     + L+ K            L++A +  +E
Sbjct: 268 ------------RSHNGIVTAAKKVITHNTQREDLDLKALRNGDLP---TLVQAQSREDE 312

Query: 371 AISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
           A+++A  ++  LD+    ++ A++      +R ++  L R+ I   I  G+         
Sbjct: 313 ALAVAEVVKRHLDQGTPPEEIAILLRSLAYSRPIEATLRRYRIPYTIVGGLSFWNRKEVQ 372

Query: 429 ILTSLLNAI-FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
           +   LL A        + +   +  P        K L                       
Sbjct: 373 LYLHLLQAASGNPESTVEVLASLV-PGMGPKKARKAL----------------------- 408

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                                ++    ++ E A+ L+  +         +  +      +
Sbjct: 409 ---------------------ETGKYPKEAEEALQLLQDLRAYTGERGEHLASAVQNTLH 447

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
                     +     +      +  NL          S              +     D
Sbjct: 448 RHRKTLWPYLLELADGIEEAAWDRWANLE------EAVSTLFAFAHHTPEGDLD-TYLAD 500

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
           I+ +  D        +    + I+    S+ L F  ++L  L EG +P   +     +  
Sbjct: 501 ILLQEED------PEDSGDGVKIMTLHASKGLEFAVVLLPFLVEGAFPSWRSAQNPATLE 554

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGT 725
            +  L               +      +     +  L      T  SR+ +        
Sbjct: 555 EERRL--------------FYVGLTRAKEHAYLSYHLVGERGATSPSRFARETPANLIH 599


>gi|51893964|ref|YP_076655.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51857653|dbj|BAD41811.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 825

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 83/764 (10%), Positives = 174/764 (22%), Gaps = 110/764 (14%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLA----------SVTIYVPTKRAIQELRS 62
           P +P    +    L    +      P++   +A           +     T +A  E+R 
Sbjct: 54  PDAPPPPGLTADDLEALRLAVEGPGPIDTGAIAHLLGGGIDPWRILAITFTNKAAAEMRE 113

Query: 63  EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV--SNIQRLLELARLILIWR 120
              ++ G ++       +           D+         V      +   +   +    
Sbjct: 114 RVEQLVGPRA-REVWAATFHSTCVRMLRRDIERLGYGRNFVILDAEDQQAVIRDCLKRLG 172

Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
                        +  +   +  +    A    D                         +
Sbjct: 173 LSERQFQPGAVLGTISNAKNAMLDPRRFADRAGD-------------------------Y 207

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-----GPIIIAGS 235
           W      +      + E+L   NA       +  +                   I++   
Sbjct: 208 WR---QQVAKVYALYQEQLRSGNALDFDDLLLKAVELLERFDDVREYYQRKFEYILVDEY 264

Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
             +     R +  +A       V+   D       W      +     +           
Sbjct: 265 QDTNHVQNRWVFLLAGEKQNLAVV--GDDDQGIYSWRGADISNILEFEAQFPGC-----R 317

Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
             KL       +  +     V     GR                R         P     
Sbjct: 318 TIKLEQNYRSTQNILSAAYAVVRHNTGRKEK-------------RLWTAAGPGDPVYHFT 364

Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
            +D     A   RE    +A  L      + +  A++      +R ++  + R  I   I
Sbjct: 365 AADERDEAAFVAREVERLVAEGLPDGTRLDYQDFAVLYRTHAQSRALEEAMVRRSIPYGI 424

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
             G+          + + L  I    D ++    V  P    G               V 
Sbjct: 425 YGGLRFFERKEIKDVLAYLRIIANPADIVSFRRAVGVPKRGIGPATVDKLVDYAEQWQVP 484

Query: 476 LR-GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
           +     +   +  L      R+             S            L+D +L+    L
Sbjct: 485 VALAALDCSMVPGLSGTYQKRMEEFGALIEELTNLSAHCT-----VGQLIDAVLERTGIL 539

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
              + +      +L  +   +            E      L    +  +  +  + + + 
Sbjct: 540 EELRAD-----TSLEAAARLENVQELRSMAAEFEPPAGEELDGLRDLDSFLATVALLTDA 594

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                                       E  + + ++    ++ L F  + L GL EGV+
Sbjct: 595 D------------------------QVGEGQNKVTLMTLHSAKGLEFPVVFLVGLEEGVF 630

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
           P N A    +    +  L      +   +                +R+L   +     SR
Sbjct: 631 PHNRALTDEVQMEEERRLCYVGMTRARLRLYLTNA---------VSRNLWGQSNYNAPSR 681

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
           +L  +      +        G     W     +       +RP 
Sbjct: 682 FLLEIPAELVEEVTPAAGASGPRRSAWDDGAAWEDAGAAVRRPA 725


>gi|312194644|ref|YP_004014705.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311225980|gb|ADP78835.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 1243

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 118/1107 (10%), Positives = 244/1107 (22%), Gaps = 188/1107 (16%)

Query: 46   SVTIYVPTKRAIQELRS-------EFIEITGKKSTILPIIKSLGDVVEEKF--------- 89
            S+     T++A  EL                      P +    D+  E           
Sbjct: 136  SILGLTFTRKAAAELNERIGAALARLRRSGADLPVTAPDLYGAPDLYSEPGLAGGPGLAG 195

Query: 90   ---------------TADLLLSYNLNPPVSNIQRLLELARLIL---IWRNKLPDIIKDLY 131
                              L        PV            +     + ++L        
Sbjct: 196  GPGLAGGPGSEGVPDLGGLPDRGGAVTPVGGGYADAVGEPAVSTYNSFASRLVADHALRL 255

Query: 132  PESPLSLPISPANAIWLAKNLAD----------------------IIDIIETEEKKWEDL 169
               P    +  A    LA N+A                       +            +L
Sbjct: 256  GLEPDCALLPAAARYQLAANVARGYPGRIEAFTGSLAALVSAVVALDGQCGEHLVDPAEL 315

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
             A              +             +   A +                 +  +  
Sbjct: 316  IAFDRRWLADVLAALDEAAARPRTATLTADLRRLARTARRRIELAGLVVEYREARRRREL 375

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            +            A  +  V +       +  LD +  T++                T  
Sbjct: 376  LDYGDQIRLAAELAERVPEVGDLLRRQFQVVLLDEYQDTSVAQRRLLAGLFGGGHPVTAV 435

Query: 290  THPQYSLAKLLDF----LDIKREDVKRLGNVSNEMY-----GRSMVISKSFLPPDTSDMR 340
              P  ++          L    E  +RLG    +++      RS     +      + + 
Sbjct: 436  GDPAQAIYGWRGASVGNLRRFPEHFRRLGGDPAQVHQLTVNQRSGGRLLTLANAVAAGLP 495

Query: 341  NTDILENKIPNIQKCFSDVALIEADNE-REEAISIAIALRMSL--------DENKKKSAL 391
                     P      +   ++       EEA  +A  L   L         E     A+
Sbjct: 496  VDARSVTLRPRPAVALAGETIVALHTSWAEEAAWLAGQLAARLRAASPGDPREPGPSCAV 555

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +         +   L   G+ +++     L T    + + ++L  +       A+  L+ 
Sbjct: 556  LARSWADVPALVDALGAAGLPVEVLGLGGLLTKPEIADIRAMLEVLDDPTANPAMTRLLS 615

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP-HWQS 510
             P  + G  +      + A    +    +          L         ++        +
Sbjct: 616  GPRLRLGPRDLAALGRRAAELARSGLPGRPRAVTAPADPLAEAVADVDPSDVVSLADALA 675

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
               +E    A   +      +  L  +         +  + + T L V            
Sbjct: 676  EPGDEVSAEATRRLRAFADELAELRGHLGAGLVELVHR-VVETTGLDVELELAAPRGGRG 734

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
            +     F           +   +        +           +             + +
Sbjct: 735  RENLAAFLRVAADFERSAAGFDDASGRASLTSFLGFLSAGERYERGLDADVPGTGRAVQV 794

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-------SDLNLKTAEKYIGQ 683
            L    S+ L +D + +  ++   +P     + +++               L   E    +
Sbjct: 795  LTMHGSKGLEWDVVAVPNISRTAFPDVQPGDRWITTPEILPTPLRGDAAELPVFEVAADR 854

Query: 684  AAHD------------------FEMANGTRHLIY---TRSLRENNIPTIASRWLQRLLVL 722
            AA D                  +      R  +            +P   S +L  L   
Sbjct: 855  AAFDRFAGECREQAEQEERRLAYVAFTRARWTLVASGHWWGPTQKMPRGPSPFLLELAEH 914

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY------------ 770
               D    +       L  T     T     +  P       A+                
Sbjct: 915  AAGDGNGRVDHWADTPLAKTNPSLETPPVFTWPAPLNPVEHAARRDAADAVRGLLASAPA 974

Query: 771  --------------------------SFSEIKQLINDPYAVYARRILKLDFIPH-----F 799
                                        SE     +D   + A+    L  +        
Sbjct: 975  AARTAAARAAGAPPAGGAGITAGDVDGASEEPSARDDRAGMTAQERALLAELDQETRLLL 1034

Query: 800  KKDPDRTDRGTLF------------------HNIITELIKKRINKNTPEINH--LMKQII 839
             +         L                     +  EL++    +  P  +        +
Sbjct: 1035 DEQLTARAPARLVALPTGLTATQVMKLRADPDGLARELVRPMPRRPVPAASRGIRFHAWV 1094

Query: 840  DSHFE-------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
            +  FE       ++      D +       +  +FL      +       V  P ++ + 
Sbjct: 1095 EEVFERRPLLDHEDLPGAEDDYLDDAELRALKDAFLAGPYGAR---RPYAVEAPFELPLG 1151

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
                 + G  D +  L +G  ++ D+KTG  P           QL+L   A        I
Sbjct: 1152 GR--VVRGRIDAVYDLGAGRYEVVDWKTGSTPADP-------VQLALYRLAWSR--LRAI 1200

Query: 953  DCRKVANLFYIRLKQKFKIDCITNDKK 979
              R+V   FY  L  +     +  + +
Sbjct: 1201 PPREVDAAFYYVLTSRVVRPELLTEGQ 1227


>gi|171682312|ref|XP_001906099.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941115|emb|CAP66765.1| unnamed protein product [Podospora anserina S mat+]
          Length = 988

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/578 (10%), Positives = 141/578 (24%), Gaps = 60/578 (10%)

Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATAR 244
             L    + +   L + N        +  +    E     +    ++I     +      
Sbjct: 174 KDLDECYEEYQAHLKKSNLLDFDDLLVRCVELLREFPSCVSNIQTVLIDEYQDTNGVQYE 233

Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
           LM   A       ++   D       W +                   Q     L DF  
Sbjct: 234 LMKLFAQRHKRITIV--GDPDQSIYGWRSAE----------------IQNLWRILKDFPG 275

Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                +++     + +   S+++ +         ++       +            L   
Sbjct: 276 TDEISLEQNYRSFDAILRLSLLVIQQDKKRYQKALKPVHGRGPRPV----------LRRL 325

Query: 365 DNEREEAISIAIALRMSLDENKK-----KSALITADRNLARRVKLELTRFGINIDISAGI 419
            +   EA  I   +R  +  +         A++    +L+R V+  L + GI   +  G 
Sbjct: 326 KSASAEADWIVSEIRRVIMMSGSMLTFNDVAILLRSASLSRHVETALGKSGIAYRMVGGK 385

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK-YLSRAKNALELVALRG 478
                L    +   L  I++  +  A+A ++  P    G      L     +  L     
Sbjct: 386 KFYERLEIKAILDYLRVIYQPENNDALARIINVPKRGVGDVTIKSLLEEAESSSLSVWAV 445

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH--ILQCITPLVT 536
                         + +   Q+    +      +  + +E A        +++ I  L+ 
Sbjct: 446 LTKHCRGDRTAKTKIPKPMEQRIAAGLIRPLDNIRRKMEEAAKPGGAVFGLVEMIEQLLA 505

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
               +         ++         + + L            +E         +  +   
Sbjct: 506 ALNFQKYLKDTHP-NEHEGRWANVEEFLTLAGDFVRDLKESSDEELLPELEGLEQAKEDE 564

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
            +             L          E    + I     ++ L +  + +  +  G  P 
Sbjct: 565 VLPRFLAN-----VSLASDVQTGDDGENKPLVTISTIHAAKGLEWPVVFVPAVYNGSIPH 619

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
             + +                E+ +   A     +     L  + SL   N     ++  
Sbjct: 620 MRSDDN-------------DEERRLLYVAMTRAQSL----LYLSCSLFSTNGNGERNQLS 662

Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
             +  L                L+  + L  T      
Sbjct: 663 SFVEPLHRVFAPKGPCFDRPVMLEIAKVLGRTLPPEDA 700


>gi|285016847|ref|YP_003374558.1| exodeoxyribonuclease V subunit gamma [Xanthomonas albilineans GPE
           PC73]
 gi|283472065|emb|CBA14572.1| probable exodeoxyribonuclease v, gamma chain protein [Xanthomonas
           albilineans]
          Length = 1187

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 94/853 (11%), Positives = 201/853 (23%), Gaps = 76/853 (8%)

Query: 32  ENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTA 91
           E  R       LLA   + +P     + L+S      G  + +     + G+ V      
Sbjct: 77  EELRRPLPEQPLLAPEVVLIPQVAMRRWLQSTLAATHGVAANL--QFLTPGEFVAHALER 134

Query: 92  DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
           +L  + +     S   RL                    L P +       P     LA  
Sbjct: 135 NLGAADDDLDMTSLHWRL-------YAALRSDLGADPTLAPLAAYLADDDPLKPWTLAGE 187

Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
           L ++ +  +   + W            + W   AD   + ++ W         +      
Sbjct: 188 LGNVFEKYQAWRRDW-----------LLRWEAGADPDDVQARLWRRI--ASGRAYRARRI 234

Query: 212 IALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +   A       +G    +         P   R+++T A        LP        
Sbjct: 235 GHYLDRYARPDGPLPQGLPPRLFAFAVLNISPDVLRVLATQARVGTLHFYLPTPTQGYWG 294

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV------------ 316
            +      +               Q     LL        D   L               
Sbjct: 295 DLQTLWQRRRAGTAVDLFAE----QIQENPLLQAWGAAGRDFMALIGDYEVVHPLAEIAV 350

Query: 317 -SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV-------ALIEADNER 368
            ++ +      ++   L         +D+ + + P        V        +       
Sbjct: 351 YADPLESGQRPLADGGLGDSLLRRMQSDLFQRRAPRSPAALPTVDKHDPSLQVHACHTRL 410

Query: 369 EEAISIAIALRMSLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDIS 416
            E   +   LR  LD+         ++ A+++ + +        +         +   ++
Sbjct: 411 RELQVLHDQLRALLDDPRLDPPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYALA 470

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH-------PLAKFGFPEKY-LSRAK 468
              PL++   + +  +LL           I  L+          L   G         A 
Sbjct: 471 DASPLASEPLAEVFLALLGLPIARFGLHEILDLIASAPIAEAAGLDTAGLDRLRGWLHAA 530

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV-LLVDHI 527
            A   +     +      D        +                            +  +
Sbjct: 531 GARWGLDAAHRRQHQAPADDAYTWRFALDRLLLGHASGAEDDIDGVAPWPQLEGSALAAL 590

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
              +  L     ++ +    +  + W +  +  L  +              E  +TL   
Sbjct: 591 DTLLRLLRVLDRHQAALAEPMPPAQWRECLLALLDALLPQTPSAPRAQRALERLRTLIDQ 650

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
           F++         A   E +      + GE+       +  +     +  RLL F  + L 
Sbjct: 651 FARDAARAEYTAAVPAEVVRAHFTAVLGESDTRAPLLTGGISFGRMVPMRLLPFRAICLL 710

Query: 648 GLNEGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
           G+N+G +P+             L    +   +  T E         F  A    +L Y  
Sbjct: 711 GMNDGDFPRRDPAAGLNRLTAELGTARRRHGDRSTREDDRFLFLQLFASAQDVFYLSYLG 770

Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
           +   +      S  +  LL        +             +                  
Sbjct: 771 ADARDGSVREPSPLVGELLACAAQYHAEPAAATTLVVRHPLQPFAAAAFGAIGAEAADPR 830

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
               + +     +       P   +    L               +      +   + ++
Sbjct: 831 RFSYRRQWRPAVDSLIGQRQPLPPWIPETLPAMADDALPTSLSIDELRRFLLDPAEQFLR 890

Query: 822 KRINKNTPEINHL 834
           +R+    P+    
Sbjct: 891 QRLGLRLPDPAQA 903


>gi|283457344|ref|YP_003361920.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133335|dbj|BAI64100.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 985

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 79/666 (11%), Positives = 181/666 (27%), Gaps = 71/666 (10%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R     + G ++  +  I +           +            
Sbjct: 188 GQILAITFTNKAAAEMRERIEALVGPRAKHM-WISTFHSFCVRVLRREAAAL-------- 238

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++    +       +  L  IIK+L  ++              AK + + I  ++ E  
Sbjct: 239 GLKSTFTIYDSTDS-QRLLSLIIKELNLDTKKFT----------AKAVGNRISALKNELV 287

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR--AEAEHL 222
             E   +        +    A    + ++        L+    +G  + L++   E  + 
Sbjct: 288 SAEAYASRVASDN-PYEKTIAQIYTVYTQRLRAA-NSLDFDDLIGRTVFLLKKFPEIANY 345

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +     I++     +  A  +L+  +     GA V    D                   
Sbjct: 346 YRRKFRHILVDEYQDTNHAQYQLVRELV----GAHVKAPADRGPYPD-------AVPPAE 394

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            +    S    Y+        +I   +       +  +              +    RN 
Sbjct: 395 LTVVGDSDQSIYAFRGADIR-NITDFEKDYPNAHTILLEQNYRSTQNILSAANAVIERNP 453

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADRNLA 399
           D    K+       + +    A++E  EA  I   +    DE+       A+       +
Sbjct: 454 DRRPKKLWTASGAGAKIIGYVAESEHAEARFITREIDRLADEHGVQPGDVAIFYRTNAQS 513

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           R ++  L R G+   +  G             + L A+   +D + +  ++  P    G 
Sbjct: 514 RTLEDMLMRAGLPYRVVGGTRFYERKEIKDALAYLRALSNPDDDVNVRRILNEPKRGIGA 573

Query: 460 -PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
             E  ++    A  +      + + D+  L +  + + A            +R      E
Sbjct: 574 KSESVVADYATAHRISFFAAARQAADVPGLGAAAVKKYAEFVRLMDDLAQIART-----E 628

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            A   ++ +L+    L   + +K+    +       +     L  +   E          
Sbjct: 629 PAATCLEAVLEQTGYLAALRASKDIQDESR-----VENLSELLDAMVEFETENPG----- 678

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                       ++     I                      + +    + ++    ++ 
Sbjct: 679 -ADLEQFLEHVALVADADSIPNRPASAEGESASAAQIAAEAAEAKAQGMVTLMTLHTAKG 737

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHL 697
           L F  + L G+  G++P   A              L   ++   +    +         L
Sbjct: 738 LEFPVVFLTGMEHGLFPHQRA--------------LTDEKEMSEERRLAYVGLTRAMERL 783

Query: 698 IYTRSL 703
             TRS 
Sbjct: 784 YLTRSE 789


>gi|298346778|ref|YP_003719465.1| RecB family exonuclease [Mobiluncus curtisii ATCC 43063]
 gi|298236839|gb|ADI67971.1| RecB family exonuclease [Mobiluncus curtisii ATCC 43063]
          Length = 234

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 65/196 (33%), Gaps = 17/196 (8%)

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISH 865
             H ++ ++      +                         E L    +   +    ++  
Sbjct: 1    MHKVLEDMFDLPPAERQAPTVRETVDRAWEKVTDGAYKLSEVLAQTSEQELKAAARQLID 60

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925
            ++   E+  +  +      +  +  + S G+ L GF DR++   +G V I DYKTG  P 
Sbjct: 61   AYFSLEDPRR--LHPSGRELGVETVL-SSGLKLRGFIDRVEQAGNGDVRIIDYKTGKAPD 117

Query: 926  KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE 985
                 +    Q+ + A   +     Q+  ++   L ++          +T D    + DE
Sbjct: 118  MRFTGE-YVFQMRMYALLYREQ--YQVTPKRT-QLLFLG----GNPQVLTFDPTDANVDE 169

Query: 986  LSEKSLKNLIEIVTLL 1001
             + +      +I   L
Sbjct: 170  FAAEINALWSDIAAHL 185


>gi|220918612|ref|YP_002493916.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956466|gb|ACL66850.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 671

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 74/716 (10%), Positives = 155/716 (21%), Gaps = 106/716 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             +     Y  +  +    V     T +A  E+R     + G             DV   
Sbjct: 34  RVIAHRVAYLLVQGVDPEQVLAVTFTNKAAGEMRERVAALAGPPGV---------DVFVS 84

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
            F +  L         + + R   +            D    L         +S  +  +
Sbjct: 85  TFHSFGLWLLQQEHEAAGLPRRFAIC-----------DAGDQLALVKRCMREVSVDDRKF 133

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            A  +  ++   +   KK                             + + L  + +   
Sbjct: 134 DAHRVLSLLSRAKNAGKKRIVPREAGQGDDYDLVAA------EVYPRYEKALRAMRSVDF 187

Query: 208 VGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                  +   A         +     +++     +  A   L+  +A       V    
Sbjct: 188 DDLIARPVAMLAHDPALRARCQERFRYLLVDEYQDTNAAQLELLKLLAGERRN--VCAVG 245

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       W     K+      +                            G     +  
Sbjct: 246 DDDQAIYGWRGAEVKNILRFERHFP--------------------------GAKEVRLEQ 279

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                       +    +N       +    +    V ++    E +EA  +A  +    
Sbjct: 280 NYRSTGHILACANAVIAKNAARKAKALFTAGEAGEPVRVVAMSEEEDEARFVAEEIARQR 339

Query: 383 DE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
            E       A++     L+R  +       +   +  G           L + L    + 
Sbjct: 340 GEGRPWSHFAVLFRLNALSRPFEEAFREGSMPYKVHGGPAFFDRSEVRDLLAYLKLCVQP 399

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
            D ++++ +V  P                        G+ +   + D        +    
Sbjct: 400 EDDVSLSRVVNVP--------------------PRGIGDTSMERVHDWAIPRKLHLLEAM 439

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                     R + E     V LVD                 +    + +    +  V  
Sbjct: 440 RRAAEIPDLPRGAAEKIGAFVALVDRFQARFRE-GPVSEAARALVAEVDLFSHVRAGVQS 498

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
           L+            L   +               G   +         + RL      + 
Sbjct: 499 LEAGSRRVDALEGLLRSLD---------------GYVQRTARPSLATWLQRLALDSREEE 543

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
                  + ++    ++ L F  + L G+ E   P    +        +  L      + 
Sbjct: 544 DPSGEGGITLMTLHAAKGLEFPVVFLVGVEEDYLPCAGIQGEARDLDEERRLAYVGITRA 603

Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
             +       A         RS R   +P   SR+L  L                 
Sbjct: 604 RERLYLTRVAA---------RSKRGKLLPRTPSRFLDDLPPAAHEKVDPAALAAPP 650


>gi|118616502|ref|YP_904834.1| exodeoxyribonuclease V (gamma chain), RecC [Mycobacterium ulcerans
           Agy99]
 gi|118568612|gb|ABL03363.1| exodeoxyribonuclease V (gamma chain), RecC [Mycobacterium ulcerans
           Agy99]
          Length = 1099

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 81/885 (9%), Positives = 202/885 (22%), Gaps = 63/885 (7%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
           PF                           A   + VP +   + L      + G      
Sbjct: 2   PFHLHRAERTDLLADGLGALLAQPLADPFAEELVLVPARGVERWLSQRLSHLLGHAPGGG 61

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
             + +       +     +     + P S       L  +I     +        +    
Sbjct: 62  DGVCAGVSFRNPRSLIAEITGTAADDPWSAEAMTWPLLEVIDGSLEEPWCATLARHLGHF 121

Query: 136 LSLPISPA---NAIWLAKNLADIIDIIETEEKK-WEDLHALKNEKYGMWWLLAADFLKIA 191
              P +         +A+ LA +      +  +   D                   L   
Sbjct: 122 DVGPEAELRRGRRYSVARRLAGLFASYARQRPRVLSDWLDGGRGDLDPD-------LSWQ 174

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
            + W   +  + A  P       + A            + + G T        L+  +A 
Sbjct: 175 PELWCALVAVVGADPPHLRHEKTLTALRARPAGLPPR-LSLFGHTRMAVTDIELLGALAT 233

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           H    + LP        A+W ++     +        ++H +     L       RE  +
Sbjct: 234 HHELHLWLPHP----SAALWRSL--ADLHGVVPRRADASHRRVVHPLLATLGRDLRELQR 287

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
            L                  L          + +  +   +      + +        + 
Sbjct: 288 GLPADPATDEALGATTRPDTLLGWLQSDLAANQVRPENRTLVAGDRSIQVHSCHGPARQI 347

Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----------TRFGINIDIS 416
             +   L   L ++     +   ++  D      + +                 + + ++
Sbjct: 348 DVLREVLLGLLADDPTLEPRDILVMCPDIETYAPLIVADFGLGDVMHGVHPAHRLRVRLA 407

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF----------PEKYLSR 466
               L T     + + LL           +  L +    +  F                 
Sbjct: 408 DRSLLQTNPLLGVASQLLMLAGSRVTASEVLNLAQAAPVRARFGFADDHLEDITRWVRQS 467

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                     R       + +     +DR+      +   H     +    ++    V+ 
Sbjct: 468 NIRWGFDQEHRKPYGVDFVHNTWRFGIDRVLAGVAMSEASHAWIDATLPLDDVGSNRVEL 527

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
             +    +   +   +S  G   + +W       +  +   +       W  ++ +   +
Sbjct: 528 AGRFAEYIDRLRQVVDSLTGTRPLREWLAALTDGIALLTRVDEG---EAWQSDQMRREFA 584

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
             S+             +   ++ R + G   +    ++ TL +   +  R +    + L
Sbjct: 585 EVSRTAGRWVETMLRVPDIRALLQRHLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCL 643

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLR 704
            GL++GV+     +       + +   +        +       A G    +L+ T +  
Sbjct: 644 VGLDDGVF---PRQGVVDGDDVLARSPMTGERDIRSEDRQLLLDAIGAATENLVITYTGA 700

Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
                      +    +LG  D     + RG+  ++   +                P   
Sbjct: 701 NEYSGQRKPPAVPLAELLGTLDMTTTEQVRGRVVVEHPLQPFDVRNVTRGALMPGVPFSF 760

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR------TDRGTLFHNIITE 818
                 +                  +           D                   +  
Sbjct: 761 DPTVLRAARAAAGERAQQPRFIGAPLAPPPADDVALADLVAFFKDPVKGFFRALDYTLPW 820

Query: 819 LIKKRINKNTPEINHLMK-----QIIDSHFEKENLPPHIDIIWRH 858
            +    +    +IN L +     +++                WR 
Sbjct: 821 DVDGVEDAMPVDINALEEWTVGDRMLADILSGMAPDEARQAEWRR 865


>gi|302879642|ref|YP_003848206.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
 gi|302582431|gb|ADL56442.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
          Length = 1099

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 80/785 (10%), Positives = 189/785 (24%), Gaps = 116/785 (14%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPAT 242
            L  A +   +R   L+          L+         ++ +      +++     + P  
Sbjct: 338  LLAAYQQLKQRQQCLDFGDLEWRVCQLLNDSDHAEYLQYKLDSRYRHVLLDEFQDTNPLQ 397

Query: 243  ARLMSTVANHPNGA----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
             +++ +             V    D       +     +             +    L K
Sbjct: 398  WQILQSWFAASKAVDSTPTVFVVGDPKQSIYRFRRADARLF-DVVRRYLVQDYAALHLKK 456

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
                 +     V   G        +  V  ++        +    +      +      +
Sbjct: 457  NETRRNSPAVLVAVNGVFDGLPEYQGFVTHQAHQTSLPGYVGVLPLAVLPEKSDTPSTQN 516

Query: 359  VAL------------IEADNEREEAISIAIALRMSLDEN------------KKKSALITA 394
              L            ++A     EA   A  +   +                    ++  
Sbjct: 517  GKLTLRNPLQRAYPDVDAGTRELEAAQFAEKINQIVGVWQVQDEGLSRVAQFSDIMVLVR 576

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
             R   +  +  L R  I    S    L  TL +S + SLL  +      +A+A  ++ P+
Sbjct: 577  RRTHLKIYEQALRRESIPFLTSRRGGLLDTLEASDIQSLLTFLITPFADLALAHTLRTPI 636

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                  +    +A       A  G                 +  +    +   WQ   S 
Sbjct: 637  FSCTDDDLMKIQASGLRMQDAGGG-----------DSSASELNPESRVLNPSWWQRLKSL 685

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             +   A   +    Q +   +            L + D     +    +        +P 
Sbjct: 686  VETGTATPALQRAHQLLQAWILLAD-------KLPVHDLLDR-IYFEGDAQARYAAAVPE 737

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET-----VKPKIEKSSTLF 629
            +        L +     +   S    +   ++  +  L   +           +  + + 
Sbjct: 738  VMCATVLANLQAFLEIALNVDSGRYPSLSGFLRELAELRRADDNESPDEGRVAQAGNAIR 797

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAK---NPFLSRVMQSDLNLKTAEKYIGQAAH 686
            I    E++ L    + L   N             +           ++   +   G    
Sbjct: 798  IYTVHEAKGLEAPIVWLLDANARPPVDRGYDVLVDWPTDAKAPVHFSIYGDKASRGGVRE 857

Query: 687  DF----EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
             +            L             +       L+   G        +R     +  
Sbjct: 858  CYFQQEAALALREDLNLLYVAMTRAKQAL-------LVSGSGAQLEHCWYQRIADTTEGA 910

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
             +          +R                S I   ++        ++L +         
Sbjct: 911  AENPLAVAPLLNQR----------------SSIFNPLSCLPDPRLLQVLPVGMRKSV--M 952

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
             D   +G   H ++  L              L ++  +   +++   P   +       +
Sbjct: 953  NDAQRQGVWLHGLLQYL---------AIPEALFRENQEQELQRKLNIPSALMPELWRQAQ 1003

Query: 863  I------SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
            +         F + +  +Q++ E  +VN   ++             DR+   ++  V + 
Sbjct: 1004 VMLSAPALSRFFDAQYYLQAANEVGYVNASGQLR----------RIDRLVEFET-EVWVL 1052

Query: 917  DYKTG 921
            DYKTG
Sbjct: 1053 DYKTG 1057


>gi|189485729|ref|YP_001956670.1| ATP-dependent UvrD family DNA helicase PcrA [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287688|dbj|BAG14209.1| ATP-dependent UvrD family DNA helicase PcrA [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 772

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 83/709 (11%), Positives = 180/709 (25%), Gaps = 129/709 (18%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKST--ILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
            SV     T +A  E++    ++            + +          A+          
Sbjct: 53  QSVLAVTFTNKAASEMKKRISDLIPGVGVNVW---VSTFHSFCAHFLRAEASRISLNPY- 108

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                    +   I   ++ + D +K+L  +         A+ I  AK            
Sbjct: 109 -------FLIYDFIDQ-KSVVKDCVKELNIDEKKFKLSIIADKISRAK------------ 148

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKI----ASKYWTERLVELNASSPVGYQIALMRAE 218
               ++L              A DF  I      + + ++L   +A       +  + A 
Sbjct: 149 ----DNLKF--PSDMAAEAESAGDFFGITVAKIYELYQKKLERADAMDFGDLIMRTVSAL 202

Query: 219 AEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
             H       +     I++     +  A    +  +A   +   V+   D       W  
Sbjct: 203 QRHSELLEYYREKYKYIMVDEYQDTNHAQYIFIKLLAGKYHNVCVV--GDDDQSVYSWRG 260

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
               +            +P     KL        + +     V      R          
Sbjct: 261 ADINNILDFEK-----DYPNAKSVKLEQNYRSTPKILSTANQVVKYNNAR---------- 305

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-RMSLDENKK--KSA 390
                      +  ++         V +++A NE +EA+ IA  +   + D   K    A
Sbjct: 306 -----------ISKRLWTQNPDNGSVTVLKAVNENDEAVKIAELIYSNAYDNKCKFSDYA 354

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           +       +R  +       I   I   +          + + L  I+  ND ++   ++
Sbjct: 355 VFYRTNAQSRTFEDTFRLSRIPYAIVGTLRFYDRAEIKDVIAYLKLIYNPNDNVSFKRVI 414

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P    G            L+ +                                 WQS
Sbjct: 415 NIPRRGIGKTSIETLENFAQLKNM-------------------------------SIWQS 443

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
               ++  L     + +      +  + T KNS    L +      +    +    +   
Sbjct: 444 VPFAQEAGLTKGPAEALNSFAQFIKDFSTLKNSGSVKLIVEKVITDSEYLKELEAENTPE 503

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
               +   +E  +    F K                  +T++          E    + +
Sbjct: 504 SKIKIENIQELISAVDDFEKNRSLD-------KSLAGYLTQIALMNDADSPDESKGKVTL 556

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L FD + + GL EG++P   +                  ++   +    +  
Sbjct: 557 MTLHLAKGLEFDNVFICGLEEGLFPMGESAFN--------------DKELEEERRLMYVG 602

Query: 691 ANGTRH-LIYTRSLRENNIP----TIASRWLQRLLVLGGTDFFDNLKKR 734
               R  L    S            + SR++        +   +  +K+
Sbjct: 603 MTRARKCLYLCWSTERKVYGKIIWNMPSRFIAEAGFKDESAEMEQNRKQ 651


>gi|84516406|ref|ZP_01003765.1| putative uvrD/DNA Helicase II [Loktanella vestfoldensis SKA53]
 gi|84509442|gb|EAQ05900.1| putative uvrD/DNA Helicase II [Loktanella vestfoldensis SKA53]
          Length = 797

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 85/694 (12%), Positives = 182/694 (26%), Gaps = 128/694 (18%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T +A +E++     + G+    LP + +   V  +                 
Sbjct: 78  QEVLAVTFTNKAAREMKHRIAALMGEAVEGLPWLGTFHSVSAKL---------------- 121

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R  EL  L   +     D    L  +  L +        W  + LA IID  + +  
Sbjct: 122 -LRRHAELVGLQSSFTILDTDDQLRLLKQ--LVVASDIDEKRWPPRMLAGIIDGWKNKAL 178

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEA 219
             + +   ++  +    +            +  RL++LNA       + ++       + 
Sbjct: 179 TPDKVPVAESGAFDGKGV-------DLYAAYQRRLIDLNAVDFGDILLHMVTIFQKHPDV 231

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +  A    +  +A        +   D       W      + 
Sbjct: 232 LRQYQTRFRYILVDEYQDTNVAQYLWLRLLAAGHKNICCV--GDDDQSIYGWRGAEVGNI 289

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
               ++      P   + +L +        +     V     GR                
Sbjct: 290 LRFEADF-----PGAHVVRLEENYRSTPHILAAASGVIAANKGR---------------- 328

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------RMSLDENKKKSALI 392
                L   +    +    V LI   +  EEA  I   +       R          A++
Sbjct: 329 -----LGKTLFTSVEEGEKVRLIGHWDGEEEARWIGEEIEASQRGTRGMAPLGLDSMAIL 383

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
               +  R  +      G+   +  G      +      +         D +A   +V  
Sbjct: 384 VRASHQMRAFEDRFLTIGLPYRVIGGPRFYERMEIRDAMAYFRLAVSPADDLAFERIVNT 443

Query: 453 PLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
           P    G      + R   A  +  + G +       L           K  T +     R
Sbjct: 444 PKRGLGDKAIQTIQRTARANRVSLVEGARLVCQGRLL------GGKGLKELTELVAGLDR 497

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
              + +  A   V      +         +N            +     ++ +   E   
Sbjct: 498 WHAQLRAEADTHVALAEIILDESGYTGFWQNDKTPEAP--GRLENLKELVKALENFE--- 552

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                                        N   +++ ++ ++D ET     E    + I+
Sbjct: 553 -----------------------------NLQGFLEHVSLIMDNET----EEAGEKVSIM 579

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F ++ L G  +G++P   + +         +  LK  E+    A   +   
Sbjct: 580 TLHAAKGLEFPSVFLPGWEDGLFPSQRSMD---------ESGLKGLEEERRLA---YVGI 627

Query: 692 NGTRHL-IYTRSLRENN----IPTIASRWLQRLL 720
                L   + +            + SR++  L 
Sbjct: 628 TRAEELCTISFAANRRVYGQWQSQMPSRFIDELP 661


>gi|300691831|ref|YP_003752826.1| helicase, uvrD subfamily [Ralstonia solanacearum PSI07]
 gi|299078891|emb|CBJ51552.1| putative helicase, uvrD subfamily [Ralstonia solanacearum PSI07]
          Length = 1178

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 77/778 (9%), Positives = 179/778 (23%), Gaps = 69/778 (8%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGS 238
              D L    + +  +   ++ +        LMR     A  +  +      +++     +
Sbjct: 364  LGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQVRLDARYKHLLLDEFQDT 423

Query: 239  IPATARLMSTVANHPNGA----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             P   R++        G      V    D       +     +  +            + 
Sbjct: 424  NPMQWRILQGWLRGYEGTGTRPTVFLVGDPKQSIYRFRRADARLFDAARDMLVAG--FEA 481

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            ++ +           ++ +  V  +   R      +             +L   +P  Q 
Sbjct: 482  TVLRTNRTRRNAPAVLEWVNAVFLQARARGDYPIYAEQSTAVDAPVGQALLLPLVPVPQA 541

Query: 355  CFSDVALI--EADNEREEA------------------ISIAIALRMSLDENKKKSA---L 391
              SD           REEA                  + +   +R +  E   + +   L
Sbjct: 542  VQSDETTPRDSLTEPREEAGDSQRYDEGCQVAACLRALHVGERVRENGAERPVRWSDFQL 601

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +   +      +  L   G+         L  TL +  L +LL+ +      + +A +++
Sbjct: 602  LVRRKRYLADYERALRDAGVPYLSPRRGGLLATLEALDLCALLDFLMTPQADLPLAHVLR 661

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             P+      +                G         L +L     A  +           
Sbjct: 662  SPIFAVTDDDLIALARAGE-------GAFAPTWWERLTALAGQPHAAAQLRRAHRLLSRW 714

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            L+         L+DHI+        Y           ++++        L          
Sbjct: 715  LAVAPTLPVHDLLDHIVYTGELKRRYAERVPEANREQALANLDAFLKLALDLDGGRYPSL 774

Query: 572  LPNLWFEEEGK-----TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
               +      +            +     +    +A    + +  +        K  ++ 
Sbjct: 775  PKFMAELRAIRQGDEEESPDEGVQGEAAEAPDTIDAELASEGLDAVQILTVHASKGLEAP 834

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA- 685
             + +L +  S        IL     G            +       +   A++       
Sbjct: 835  FVALLDSHHSDTRADTAGILIDWPPGAEAPAHFSAFGKTAERGRARDPLFAQETALGERE 894

Query: 686  ----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                    M    + LI +    + +     +        + G+  +  L          
Sbjct: 895  NWNLLYVAMTRARQALIVSGVANKRDGAAAQAVDEGDAPEVDGSASWYTLLATAGVATPA 954

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
              +                          + +             A R            
Sbjct: 955  PVEAAAAASTGADHAASQAVAYHDFRVPLTVTV-------RIGGAAERAADAPGTADAIF 1007

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
            D     +G L H ++  L +    +  P+        I   F    +             
Sbjct: 1008 DQGAVAQGELLHAVLERLTRHGKPEQVPDAAA-----IARWFGATGVTDADAARAAEAVR 1062

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
            ++  +         +  +     +         G+ L    DR+       V + DYK
Sbjct: 1063 RMLAAEALAHVFDPARFDVAHNEVEL---FSPDGMLL--RVDRLIERGD-EVLVVDYK 1114


>gi|283780044|ref|YP_003370799.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
 gi|283438497|gb|ADB16939.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
          Length = 1049

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 79/791 (9%), Positives = 187/791 (23%), Gaps = 106/791 (13%)

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMR----AEAEHLMKGTKGPIIIAGST 236
            W L   F     +        L          A +     A++   +      +++    
Sbjct: 303  WQLLDHFAG-VYQRLQREHRSLRFDDVTQQLAAGLDSSKLAQSTSRLGTRIEHLLLDEFQ 361

Query: 237  GSIPATARLMSTVA----NHPNGAIVLPGLDCHIPTAIWNT----ITEKSTNITSSNTTY 288
             +     R++  +A         + +L   D       W      I            + 
Sbjct: 362  DTSLTQWRVLLPIATQMLATHPASTLLCVGDVKQAIYGWRGGLASIFAAVQEQLPEIASE 421

Query: 289  STHPQYSLAKL-LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                 Y  ++  +D +++  +++ +  ++ N         +            +  +  +
Sbjct: 422  ELATSYRCSQPVIDCVNLVFKNLLQHTSLENASEAVKKWQTTFPQHSTAKKELSGYVALH 481

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRM-SLDENKKKSALITADRNLARRVKLEL 406
              P   +  +   L             A  +   +     +   ++    +    + L L
Sbjct: 482  VAPAADEGETQKRL--------RLQYAANLIAQLAAAHPTRSLGVLVRKNDTVAEMMLLL 533

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
             +  +      G  L  +    I+ S L       D +A   L   PL            
Sbjct: 534  RQRSVRASEEGGNALCDSAPVEIILSALRLAEHPADSVARFHLAHSPLGH---------- 583

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                                D        +A + +         +   +       ++  
Sbjct: 584  ----------------ALGFDADQFDDTSLAAEISARIRRDLLEQGYGKVVLAWARILAP 627

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
              Q        +  + +     + S   +  +  ++                      + 
Sbjct: 628  HCQPRDEARLGQLVEMAYQLGNNPSLRIERLIEIIET-------------RRVSDPAAAK 674

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG--------TLESRL 638
            +    +     ++ + +   ++   L     +      S    +          T +   
Sbjct: 675  VRVMTVHQAKGLEFDLVVLPELDESLTGQVPMFVTGRSSPYGPVDTVCRYANKQTQQQLG 734

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
             +   L     +  V          ++R + +   +       G    D+          
Sbjct: 735  KSLVELFQTHTDAAVTESLCVMYVAMTRAIHAMYMVVDPPTKTGTLKRDYAGLLKA---T 791

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
             T S    N     S   +        D             D+  ++         K+P 
Sbjct: 792  LTTSEVLPN-----SVAFETGEETWRPDHAAIDLTLDTVPDDYASEIPTIDPIDIAKKPA 846

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
              P L       S SE++               +L              RGTL H  +  
Sbjct: 847  FPPRLVD---RVSPSELEGGPKVRMDFLLGTSDRL-----------ALARGTLIHGWMEL 892

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFHKISHSFLEHEEKIQS 876
            +        T E          S   + +         + +    ++  +  E   + + 
Sbjct: 893  VDWTDKPLPTDEALRASDYAASSEPAELDAMIAEFRRYLAQPAIRELLST--ERYAEHRG 950

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG----FVDITDYKTGDNPKKETAQ-- 930
             ++ +    P  +        LTG  DR+ L   G      ++ D+KT      +     
Sbjct: 951  ELQ-LLREHPFAVR--DGEQLLTGSFDRVVLWSQGGKVIGAEVIDFKTDHGKDADELSSR 1007

Query: 931  -KLIDPQLSLE 940
                 PQL   
Sbjct: 1008 VAFYTPQLRAY 1018


>gi|192823882|ref|YP_001994800.1| gp69 [Mycobacterium phage DD5]
 gi|192824154|ref|YP_001994709.1| gp68 [Mycobacterium phage Lockley]
 gi|190610384|gb|ACE79905.1| gp68 [Mycobacterium phage Lockley]
 gi|190610660|gb|ACE80178.1| gp69 [Mycobacterium phage DD5]
          Length = 272

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 80/290 (27%), Gaps = 57/290 (19%)

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
               + +  S S++ Q    P++    R  ++   P          +GT  H +  + +  
Sbjct: 9    YTYEKKPRSVSQLSQFDKCPFSWKLARHERVWKRPAAW-----LQQGTGVHAVAEKYMLS 63

Query: 823  RINKNTPEINHLMK----------QIIDSHFEKENLP---------PHIDIIW---RHLF 860
            ++  +        +                                  I+  W       
Sbjct: 64   KLAGSPLTREECYEIFKAEYADGINEATEETPNLGWWFSSGPYRGADDIERRWGIGLQQV 123

Query: 861  HKISHSFLEH---EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
             K       H   E           + +  +  ++  GI + G+ D + +L  G V + D
Sbjct: 124  DKTLDWIDNHQSLEVWHTPDGAP-GIELAIEFELD--GIEIRGYIDAVLVL-DGEVLVVD 179

Query: 918  YKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
            +KTG  P         D QL++ A AL      Q+   ++    Y   K           
Sbjct: 180  WKTGLKP-------GDDFQLAVYALAL-----KQLYGVEITRGVYFMAKTGKPTYPYDLT 227

Query: 978  KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI---QSEY 1024
                      EK      E+   L+ G+  F      S          EY
Sbjct: 228  DWTR------EKISARFHEMERKLEAGD--FTPKPGASCARCDVALSCEY 269


>gi|158340348|ref|YP_001521704.1| hypothetical protein AM1_C0273 [Acaryochloris marina MBIC11017]
 gi|158310589|gb|ABW32203.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 272

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 72/236 (30%), Gaps = 31/236 (13%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
            + S +++      P A   +    L     F         G   H  + ++ +       
Sbjct: 14   SLSATKLLTYKRCPQAYSFKYERGLTSPSAF----GSPKFGNALHGALADIYRDWNYAYP 69

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN--IP 886
                         H  +  L                  ++    +I+   + + V   I 
Sbjct: 70   LPSLDWFAICWQQHTGE--LSSTQIHEGWMALQLYYERYMAPLPQIR---KPLGVEGKIK 124

Query: 887  AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            A   + +I   L G  DR+D    G +++ DYKT    K       ID QL L    L+ 
Sbjct: 125  ANFQVNNIEFSLAGHYDRLDYFGDG-LELIDYKTSKIVKPSD---GIDWQLGLYNLILEQ 180

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
                 +      +L Y+R  Q+                +++ +  + + E++  L 
Sbjct: 181  TYHQALQRL---SLIYLRQGQRITY-------------DVTPEHHRQVRELIGDLA 220


>gi|92113295|ref|YP_573223.1| DNA helicase/exodeoxyribonuclease V, gamma subunit
           [Chromohalobacter salexigens DSM 3043]
 gi|91796385|gb|ABE58524.1| DNA helicase/exodeoxyribonuclease V, gamma subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 1210

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 96/853 (11%), Positives = 202/853 (23%), Gaps = 113/853 (13%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
             L   ++   R  PL P      T  V +    Q LR    E  G  +++         
Sbjct: 14  GTLALDVIRRHRQPPLVPE-----TFLVQSNGMAQWLRLTLAEADGIAASV--DFPLPSS 66

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARL----------------ILIWRNKLPDII 127
            V   + A L        P         L  L                    R+ L    
Sbjct: 67  FVWRAYRAVLGDDIPEQSPFDKTPLAWRLMALLERCLDPETSPDDPTCYAPLRDYLQGEA 126

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
            +  P    +          LA  LAD+ D         E + A +  ++        D 
Sbjct: 127 LEASPLPGAAEEARERRRWHLAVRLADLFDQYLIYR--PEWIEAWERGEHAP--ADLPDD 182

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPA 241
            +     W   + +  A++   ++  L R   +      K P      + + G +     
Sbjct: 183 QRWQPALWRALIEDAPAAAREHHRARLHRRFLDAARGLRKRPRDVPPRVFVFGISALPAQ 242

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST----HPQYSLA 297
           T   +  ++   +  +++     H    I +           S+         HP+    
Sbjct: 243 TLEALHALSGVVDVFLMIANPCRHYWGDIVSDRDAIKRAGRLSSQARREQEARHPEAPWL 302

Query: 298 KLLDFLDIKREDVKRLGN-----------------------------VSNEMYGRSMVIS 328
             LD   +       L                                       +++  
Sbjct: 303 AELDEEALHLHANPLLAGWGTQGRDFIVGLYEFESDRGFDLETDVFRDMAPEQSPTLLQQ 362

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---- 384
                 +          E     I +    ++L+ A +   E   +   L  + +     
Sbjct: 363 LQQDVLELVHPGERARREGGPRRIAEDDESLSLVSAHSPLREVEILHDRLLAAFERAEAA 422

Query: 385 ----NKKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSL 433
                 +   ++  D +        +           I   I+  +        ++   L
Sbjct: 423 GQPLRPRDIIVMVPDIDRYAPCIEAVFGQLPPSHPRHIPFTIADQVASEAHPLMALALLL 482

Query: 434 LNAIFKLNDFMAIATLVKHPLAKF-------GFPEKYLSRAKNALELVALRGNKNSYDIM 486
           L    +      +   ++ P  +                 A + +       +++S    
Sbjct: 483 LELPERRLTVSEVLDALEVPAFRTAFAIDEAELERLRQWLAGSGVRWGLSAEHRDSLGFP 542

Query: 487 DLKS--------------------LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
            L                          R  ++ +  H P    +      E+  L  D 
Sbjct: 543 ALGENSWRFGLSRMLLGYAVGEPSAGGARDDSEDSLGHAPSGDFQGIVPYAEVGGLEADL 602

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
             +  T L T +    +    L+   W                    ++        L+ 
Sbjct: 603 AGRVATLLSTLEQQCAALGERLTPMAWLGRLQALFAACLQPGTADEHDV-MARLDAALAR 661

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
              +                D +   +D   +  +      +     +  R + F  + L
Sbjct: 662 WAQQCRHADFEEPVGLGVVRDALRAELDEGGLAQRFLAG-KVNFATLMPMRAIPFREVYL 720

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE- 705
            G+N+G +P+      F     +     ++             M +    L  +    + 
Sbjct: 721 LGMNDGDYPRVRQPQDFDLMATRPRPGDRSRRDDDRYL-MLEAMLSARAKLTLSWVGHDV 779

Query: 706 -NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
            +N P   S  +  LL      +       G       R+L  T     + R        
Sbjct: 780 RDNTPRPPSVLIGELLDTLEQGWDVPEDGAGSRDARLARRLIETHPLQPFSRRYFERDDP 839

Query: 765 AQPRTYSFSEIKQ 777
                 S+  +  
Sbjct: 840 RFTYEASWEALYA 852


>gi|330984007|gb|EGH82110.1| ATP-dependent DNA helicase pcrA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 700

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 183/689 (26%), Gaps = 86/689 (12%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           S+ +   T +   E++     + G+ +       + G      + A L    +       
Sbjct: 72  SIMLVTFTNKGADEIKERLEAMVGEDA----QYITAGTFHSIIYKAILKAYADHPY---- 123

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++ +    +   I  +     + +   +          +     K +   +     +   
Sbjct: 124 LESIGLDMKECSILDDSESKALFEEAIKMQDKEVQELIDEHKWDKKIEGEMASARAKGHT 183

Query: 166 WEDL--HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA--EAEH 221
            E      +            +  +             ++    +     L+    +   
Sbjct: 184 PETYGREMIGFGDPKEMLYRTSMDVWSTYTKLCRAANGIDFDDILVVACQLLARDQQIGR 243

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
            +      +++     +     R+M  +A H     V+   D       +          
Sbjct: 244 ELSERYRYLMLDEYQDTNRVQMRIMDEIAKHHENIFVV--GDEKQSIYAFRGADITVILG 301

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
             S    +          +  +DI       + + +N +                   + 
Sbjct: 302 FKSRYKGAK---------IVSMDINYRSTPAILDAANCI-------------AMHMSQKL 339

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLA 399
           T+    K     +    +AL+  +N+ +EA  IA A+R  + +    K  A++   R   
Sbjct: 340 TEGQLRKDDPYMERGKAIALVGFENDLQEAEVIAKAIRRDISQGAQGKDIAILYRSRTTK 399

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
             ++  L + GIN  +   I            +LL   F+  D MA   ++K        
Sbjct: 400 PVIEQALVKAGINYQVVGDIGFYQRAEVKNAIALLRFTFRPWDSMAALRVLK-------- 451

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                                       +      +  +     H    +       K+ 
Sbjct: 452 -----------------------CTSFGVSDKSAKKAMSTGKTAHAYLTEMSEKTRGKDE 488

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
              +   +   ++ ++  +           +    +          +       N   +E
Sbjct: 489 PTAVAQKLKPLLSMMLCIRRLVAYGEEAGYVRQAVERMWESYLQPGVQRAAASDNAPIDE 548

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI--LGTLESR 637
             ++     + +++       N  +  DI+  L     V  + E+   L I  +    S+
Sbjct: 549 AVESRMQNVAFLLDRFFGELENGRKPEDILDELSMMGDVTKQTEQDKALTIKLMTIHGSK 608

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            + F  + L GL+    P        L             E+           A    ++
Sbjct: 609 GMEFPYVYLPGLDADTTPGEAEDINEL-------------EEERRIFYVGLTRAMKRVNV 655

Query: 698 IYTRSLRENNIP--TIASRWLQRLLVLGG 724
            +++  R+      T AS +++ L    G
Sbjct: 656 SFSKIKRKYGQRMNTEASPYVKELSEGLG 684


>gi|296168415|ref|ZP_06850295.1| exodeoxyribonuclease V gamma subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896709|gb|EFG76344.1| exodeoxyribonuclease V gamma subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 1090

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 74/752 (9%), Positives = 182/752 (24%), Gaps = 54/752 (7%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFI-----EITGKKSTILPIIKSLGDVVEEKFTADLLLS 96
              A   + VP +   + L             G         +S   ++ E         
Sbjct: 28  DPFAEELVLVPARGVERWLSQRLSHVLGRARGGDGVCAGVAFRSPASLIAELTGTADEDP 87

Query: 97  YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156
           ++    ++     +  + L   W   L   +    P    +          +A+ LA + 
Sbjct: 88  WS-PDAMAWPLLAVIDSSLDEPWCRTLATHLGHFAPTEAEAELRRGRR-YSVARRLAGLF 145

Query: 157 DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
                +         L  +            L    + W   +  + A  P       + 
Sbjct: 146 ASYARQR------PRLLADWLAGDAGDLDPDLAWQPELWRALVAAVPADPPHVRHHNTVT 199

Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
              +         + + G T        L+  VA H +  + LP    H+  A+      
Sbjct: 200 RLRDGPGGLPP-RLSLFGHTRLASTDVELLDAVAAHHDLHLWLPHPSDHLWRALGGDRGA 258

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
                 +S+ +       +L + L  L       + L   +            + L    
Sbjct: 259 IPRRADTSHRSVGHPLLATLGRDLREL------QRALPAAAQTDECLPAPARPATLLGWL 312

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALI 392
                 + +  +   +      V +        +   +   L   L +      +   ++
Sbjct: 313 QADIAANAVRPQGRILAADDRSVQVHNCHGPARQVDVLREVLLGLLQDDPTLQPRDILVM 372

Query: 393 TADRNLARRVKLEL-----------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
             D      + +                 + + ++   PL T     +   LL       
Sbjct: 373 CPDIETYAPLIVADFGLGDVVHGAHPAHRLRVRLADRSPLQTNPLLGVAAQLLALAGSRV 432

Query: 442 DFMAIATLVKHPLAKFGF----------PEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
               +    +    +  F                           R   +   + +    
Sbjct: 433 TASEVLDFAEAAPVRARFGLTDDDLEAIARWVRQANIRWGFDQEHRRPYHVDFVHNTWRF 492

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            +DR+      +   H     +    +++   V+   Q    +   +   +S  G  ++ 
Sbjct: 493 GIDRVLAGVAMSDDSHAWIDATLPLDDVSSNRVELAGQFAEFVARLQRVVDSLTGARALR 552

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
           DW       +  +         +LW   + +   +         +       +   ++  
Sbjct: 553 DWLAALAEGVDLLTRVAD---ADLWQTGQLQREFASALADAGPRADTVLRLPDVRVLLDG 609

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            + G   +    ++ TL +   +  R +    + L GL++GV+               + 
Sbjct: 610 RLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVF---PRLGVVDGDDALAR 665

Query: 672 LNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             +        +       A G     L+ T +             +    +L   D   
Sbjct: 666 DPMTGERDIRSEDRQLLLDAIGAATEKLVITYTGANEYSGQPRPPAVPLAELLDTLDSTT 725

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
             + R +  +    +                P
Sbjct: 726 AGRVRDRIVVAHPLQPFDIRNVVPGALVPDVP 757


>gi|291037246|ref|ZP_06568210.1| UvrD/REP helicase [Gluconacetobacter xylinus NBRC 3288]
          Length = 683

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 73/749 (9%), Positives = 177/749 (23%), Gaps = 124/749 (16%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG--K 70
             +   + +   +     +               +     T +A QE+R    ++ G   
Sbjct: 38  AGTGKTKTLTAGVATRVGLHGMVPG--------QILCVTFTNKAAQEMRKRIGDVLGTYS 89

Query: 71  KSTILPIIKSLG--DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK 128
             T L    +L    +  E   A L   +++     ++           I R  +  + K
Sbjct: 90  VPTWLGTFHALAARQLRAEPEVAQLRSGFDIRDAEDSL----------AIVRRLIRTVPK 139

Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL---LAA 185
           +  P      P        +A+ +A + + + T    +  + +L   +          + 
Sbjct: 140 EKLPVPQEGAPGDARQIKKMAERIARLKEDLITPVAAFAHVESLIGRRQSANLHVDHESW 199

Query: 186 DFLKIASKYWTERLVELNASSPVGYQ-----IALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
            F+      +   L E NA+             L  A            ++         
Sbjct: 200 RFVVGLYGRYQAILREQNAADFGDLLMWPTLAMLHDAAYHRRWSARFTAVMADEFQDVNR 259

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
           A    ++ ++       +    D       W                             
Sbjct: 260 AQYLWLTLLSRTSG--ELFCVGDDSQSIYSWRGAKVGFLRNFPREFPA------------ 305

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                           + ++       S      +     +   +E  +   +     + 
Sbjct: 306 --------------VKTFKLEENFRSTSNILDASNAVISFDPSRIEKTLFTRRGEGLPIE 351

Query: 361 LIEADNEREEAISIAIAL--RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
           ++      EEA +I   +  R +        A+I     L R ++  L    +  +I   
Sbjct: 352 VLGFSYATEEAAAIVREIGRRAATGVAWHDMAIIYRQNRLFRTLEEALLHARVPYEIIGD 411

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
           +            +LL      ++  +               ++   R  N         
Sbjct: 412 VGFYWRTAVKDALALLTLCAWPDERRS---------------DEAFRRMANRPPRGLGAR 456

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                +I      +    A  +                       V  + Q        +
Sbjct: 457 GLGKIEIEASAGGLSLCAAATRTRLSPRCVV---------ALQGFVQILRQI--GCRKGE 505

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
           +      G L  + +  +      +    +   L  L    +G        +        
Sbjct: 506 SLGERLTGLLEATGYLDMLRADDSDEAATQRENLAELIELAQGFRRVEHLLEHAALAGG- 564

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                                P  +    + ++    S+ L F  + L    E ++P   
Sbjct: 565 --------------------APGEKGRDRVQLMTMHRSKGLEFRHVFLPAWEEAIFPGAM 604

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
           ++N                E+ +   A    M         T         +  SR++  
Sbjct: 605 SRN-------------PGEERRLAYVALTRAM----EQATITFCDYRQGGSSRPSRFIDE 647

Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
           + +      +++ +   +      R++D 
Sbjct: 648 IPLENRVSSWNHGRNEPRQSDGRWRQVDQ 676


>gi|257413618|ref|ZP_05591726.1| putative ATP-dependent nuclease subunit B [Roseburia intestinalis
           L1-82]
 gi|257202968|gb|EEV01253.1| putative ATP-dependent nuclease subunit B [Roseburia intestinalis
           L1-82]
          Length = 308

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 50/180 (27%), Gaps = 25/180 (13%)

Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK---- 888
           M+  I      +      +          +    +    +  +         +       
Sbjct: 1   MEDAIAGSGIGDVFEDARNSYLLKRMEATAKRTIWALMLQVRKGKFVPSGFEVSFSRAER 60

Query: 889 ---MAIESIG---IHLTGFADRID--LLKSGFVD-ITDYKTG-DNPKKETAQKLIDPQLS 938
              +  +      + L G  DR+D           I DYK+G            +  QL 
Sbjct: 61  LDAVQFQLGEDEKMRLRGRIDRVDTYETDDKVYVKIIDYKSGNTTFSLLNFYYGLQLQLV 120

Query: 939 LE---AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
           +    A  L    +   D  + A +FY  +      D + +   + S +E+    L+ L 
Sbjct: 121 VYMNAALELTKKKYKGKD-TEPAGIFYYHIT-----DPMVDADGQESEEEIRRSILEQLK 174


>gi|320532645|ref|ZP_08033442.1| hypothetical protein HMPREF9057_01317 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135139|gb|EFW27290.1| hypothetical protein HMPREF9057_01317 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 261

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 69/220 (31%), Gaps = 21/220 (9%)

Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-KRINKNTPEINHLMKQII 839
            P     R + +L            T +GT+ H ++  L      ++       L+ +  
Sbjct: 3   CPLMFRLRTVDRLPEPGSL-----ATHKGTVVHGVLERLYDLPASDRRPEAALDLLPEQW 57

Query: 840 DSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
            SH EK                W      +  ++   E   +  +E     +  +     
Sbjct: 58  ASHREKNPEVMDLFEDASRVETWLEEARGLIRTYFTLENPQR--LEPADRELFVQTETGD 115

Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            G+ L GF DR+D+   G + + DYKTG +P     +  +  Q+   A  L       + 
Sbjct: 116 -GLLLRGFVDRLDVAPDGAMRVVDYKTGRSPGTRFMEDAL-FQMRFYALVLWR-----LR 168

Query: 954 CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
            R  A L  + LK    +       +    +         
Sbjct: 169 GRAPARLQLVYLKDGRVLTHDPRLPELERTETRLMHLWDE 208


>gi|87302003|ref|ZP_01084837.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 5701]
 gi|87283571|gb|EAQ75526.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 5701]
          Length = 797

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 71/778 (9%), Positives = 177/778 (22%), Gaps = 143/778 (18%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF----IEITGKKSTILPIIKSL 81
           L   +     +  ++P  L +VT    T +A +E++        +         P     
Sbjct: 36  LTHRIAHLIGHHGVDPHQLLAVT---FTNKAAREMKERLELLLAQRLAGSQFGQP----- 87

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI- 140
                 +      L   +   V+    +     L         D  KD    +       
Sbjct: 88  --FSTLQPQQQRQLRNRIYREVTKELWIGTFHALFARLLRFDIDKYKDPEGLTWTRQFSI 145

Query: 141 -SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA----ADFLKIASKYW 195
              ++A  L K +       +      +     K       W ++      +L    +  
Sbjct: 146 YDESDAQTLVKEIVT-----QELGLDPKRFEPKKVR-----WAISNAKNQGWLPDVMEAK 195

Query: 196 TERLVELNASSPVGYQIALMRA---------------------EAEHLMKGTKGPIIIAG 234
            E +     +         + A                     +  H   G    +++  
Sbjct: 196 AEGMRGRKEAEAYRLYRRALAANNALDFDDLLLLPVQLLQSNEQVRHYWHGRFRHVLVDE 255

Query: 235 STGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
              +      L+  +          N   G  V    D       +             +
Sbjct: 256 YQDTNRTQYDLIKLLVTGGRDPETFNDWGGRSVFVVGDADQSIYSFRAADFTILMGFQDD 315

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                                            ++       +      +     N++ +
Sbjct: 316 FGD-------------------RASDEDTRTMVKLEENYRSTATILEAANALIAHNSERI 356

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARR 401
           +  +   +     + L   D+E  EA ++   LRM    + +      A++      +R 
Sbjct: 357 DKVLRPTRGEGELITLTRCDDEIAEAEAVVHRLRMLEAAHPELSWGDMAILYRTNAQSRA 416

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           ++  L R+GI   +  G+          + + L  +    D +++  ++  P    G   
Sbjct: 417 MEESLVRWGIPYIVVGGLRFYDRREIKDVLAYLRLLVNPADSVSLLRVLNVPRRGIGKTT 476

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                                                  + +            D E   
Sbjct: 477 VQRLS----------------------------------DASAQLGLPLWEVVNDAEAVR 502

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL-DEHRKLPNLWFEEE 580
            L     + +       ++ +    +   ++  +  +     +                 
Sbjct: 503 SLAGRSAKGLLQFSELISDLSGRIQDAPPAELVQRVMEQSGYLAELITEGTDEAEERRRN 562

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
            + L +   +  E               +           K   +  + ++    S+ L 
Sbjct: 563 LQELVNAALQYQEENEEGSLEG-----FLASAALASDADSKDTAADRVTLMTLHASKGLE 617

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIY 699
           F  + L GL +G++P   +              L+       +    +      +  L  
Sbjct: 618 FPVVCLVGLEQGLFPSYRS--------------LEDPSALEEERRLCYVGITRAKERLFL 663

Query: 700 TRSLREN-----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
           + +           P + S +L  L                        +L    ++ 
Sbjct: 664 SHASERRLWGGMREPAVPSVFLSELPPELVQGDIPQSGGAAIRREQRLDRLTRVDREE 721


>gi|289761084|ref|ZP_06520462.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM
           1503]
 gi|289708590|gb|EFD72606.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM
           1503]
          Length = 702

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 76/659 (11%), Positives = 170/659 (25%), Gaps = 82/659 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R   + + G+K+  +  + +              L   LN   S
Sbjct: 68  GQILAITFTNKAAAEMRERVVGLVGEKARYM-WVSTFHSTCVRILRNQAALIEGLNSNFS 126

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+ +    L   IK   P                   LA+ I  ++ E  
Sbjct: 127 IYDADDS-RRLLQMVGRDLGLDIKRYSPRL-----------------LANAISNLKNELI 168

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTE--RLVELNASSPVGYQIALMRAEAEHL 222
                 A   E         A       +       L   +        +      A++ 
Sbjct: 169 DPHQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYY 228

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANH------PNGAIVLPGLDCHIPTAIWNTITE 276
            +     +++     +  A   L+  +         P G + +   D       +   T 
Sbjct: 229 RR-RFRHVLVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCV-VGDADQSIYAFRGATI 286

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++            +P      L       +  +    +V     GR             
Sbjct: 287 RNIEDFE-----RDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRR------------ 329

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALIT 393
                    E ++         +    ADNE +EA  +A    AL    +      A+  
Sbjct: 330 ---------EKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDVAVFY 380

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              N +R ++  L R GI   +  G+          + + L  +    D +++  ++  P
Sbjct: 381 RTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRILNTP 440

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G   +                   +        +   +      NT      +   
Sbjct: 441 RRGIGDRAEACVAVYAEN----------TGVGFGDALVAAAQGKVPMLNTRAEKAIAGFV 490

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           E   EL   L D + + +  ++     +     +    +  +L    L  +    H    
Sbjct: 491 EMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARL--DNLNELVSVAHEFST 548

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
           +                +      +    +    +    +  +  +     +  + ++  
Sbjct: 549 DRENAAA----------LGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTL 598

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
             ++ L F  + + G  +G++P   A +       +  L      +   +       A 
Sbjct: 599 HTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITR--ARQRLYVSRAI 655


>gi|78211730|ref|YP_380509.1| ATP-dependent DNA helicase Rep [Synechococcus sp. CC9605]
 gi|78196189|gb|ABB33954.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9605]
          Length = 796

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 72/765 (9%), Positives = 194/765 (25%), Gaps = 105/765 (13%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF----IEITGKKSTILPIIKSL 81
           L   +         +P   A +     T +A +E++        +   +     P   +L
Sbjct: 36  LTHRIAHLIGEHGADP---AQILAVTFTNKAAREMKERLEVLLAQRLAQSQYGQP-WSTL 91

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             V + +  + +         +     L   AR++    +K  D     + +       +
Sbjct: 92  PPVEQRQLRSCIYREVTKELWIGTFHALF--ARMLRYDIDKFKDAEGLTWTKQFSIYDEA 149

Query: 142 PANAIW---LAKNL------------ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
            A ++    + + L               I   + +    + L A    +          
Sbjct: 150 DAQSLVKEIVTQELQLDPKRFEPKKTRWAISNAKNQGWLPDQLEANAEGQR-------GK 202

Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPA 241
                 + + + L   NA       +  ++   ++             +++     +   
Sbjct: 203 LTADVYRRYRKALAANNALDFDDLLLLPVQLLQQNDQVRSYWHRRFRHVLVDEYQDTNRT 262

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
              L+          +++           W+       ++        +   +  A    
Sbjct: 263 QYDLIK---------LLVTDGKDPQDVEDWSG-----RSVFVVGDADQSIYSFRAADFTI 308

Query: 302 FLDIKREDVKRLGNVSNE----MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
            +  + +   +  + S +    +       +      +     N++ ++  +   +    
Sbjct: 309 LMGFQDDFGDQAPDDSTQTMVKLEENYRSTATILEAANALIANNSERIDKVLRPTRGEGE 368

Query: 358 DVALIEADNEREEAISIAIALR----MSLDENKKKSALITADRNLARRVKLELTRFGINI 413
            + L   D+E  EA ++   +R     + + +    A++      +R ++  L R+GI  
Sbjct: 369 LITLTRCDDEIAEAEAVVHRMRTMEAANPELSWGDMAVLYRTNAQSRAIEESLVRWGIPY 428

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            +  G+          L + L  +    D +++  ++  P                    
Sbjct: 429 IVVGGLRFYDRREIKDLLAYLRLLVNPADTVSLLRVINVP-------------------- 468

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
              +       I  L            +    P     L     +  +   D +      
Sbjct: 469 ---KRGIGKTTIQRLTDAANQLGIPLWDVVSDPEAVRSLGGRSAKGLLQFCDLVN----- 520

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
               K        +  I    + +    + +              +E    +  + +  +
Sbjct: 521 --DLKARSRDVAPSELIQQVMEKSGYVSELIADGTDEAEERRRNLQELVNAALQYQEEND 578

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
            G             +           K   +  + ++    S+ L F  + L GL +G+
Sbjct: 579 EGY--------LEGFLATAALSSDADSKDTAADRVTLMTLHSSKGLEFPVVCLVGLEQGL 630

Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
           +P   + +   S   +  L      +   +    F      R L             + S
Sbjct: 631 FPSYRSLDDPASLEEERRLCYVGITRAKER---LFISHACERRLW-----GGMREAAVPS 682

Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
            +L  L                        +L    +      P 
Sbjct: 683 VFLSELPEALIQGDIPQTGGAALRRERRLDRLTRVDRDKPSSAPA 727


>gi|78184983|ref|YP_377418.1| exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. CC9902]
 gi|78169277|gb|ABB26374.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp.
            CC9902]
          Length = 1208

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 72/738 (9%), Positives = 173/738 (23%), Gaps = 76/738 (10%)

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                 +++     + P   RL+          ++L   D       +      +      
Sbjct: 392  ERYRAVMVDEFQDTDPVQWRLLRRAFGDRIHHLLLLVGDPKQAIYRFRGGDLGTYLEARQ 451

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                  H       LLD        +  L  +      RS +   +        +  T  
Sbjct: 452  QVDRIDH-------LLDNFRATASLMDGLNTLMAPGMPRSHLEIPAVRAQAVDQVSPTTA 504

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
                +       +    +E    +  A  +   L      +     ++ +    A  ++ 
Sbjct: 505  ALQLLELELDTPASRTALEQQLPQHLAAVVFEILEGPDQPDPSDLCVLVSRHQQATDLRR 564

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L   GI   +     +  +  + ++  LL+A+    D   +  LV  PL  +       
Sbjct: 565  ALGAAGIPSRLVTQGDVLESEAALVVQRLLDALADPGDDRCLRLLVSSPLMNWSLEAMEN 624

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                + L     R  + +   + L   +   +  Q+        +     +     V   
Sbjct: 625  EGGLDQLAEQL-RLWERALPKLGLMGCLAQLLEGQRTADLSERGRMLGDLQQVGRLVQEA 683

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE--HRKLPNLWFEEEGK 582
             H     +        +        + +  +               HR     +      
Sbjct: 684  MHRQGLDSATAANWLRRERLHPTTPVPEARQPHSDQADQAVAVVTVHRSKGLEYPVVICP 743

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             L     +          +   +I I +    G     +    +           +    
Sbjct: 744  YLWQAPRQESGPLWRETGDGRWFIAIDSHWGKGHRAAQQATDDAMAEAERLAYVAMTRAR 803

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYT 700
            + ++         +      +L                + Q   D      +     +  
Sbjct: 804  SQLMVVWVRSTGQEGAPLPCWL-------FGADAIHDSVDQFNDDRLDLALSERGVSLLR 856

Query: 701  RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
            R L +  +P+   R L     LG  +    + +                   H +   P 
Sbjct: 857  RVLPDPLLPSQRWRSLPSEQPLGLGETPGRIDRSWGRASYSAWISAPVDPVVHEQGRDPD 916

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
            P  E      S +  +                          P     G   H I+ ++ 
Sbjct: 917  PGAEEC----SLTGPELW---------------PEQGPLADFPRGAVAGDCLHRILEQIP 957

Query: 821  KKRINKNTPEINHLMKQII-DSHFEKENLPPHIDIIWRH----LFHKISHSFLEHEEKIQ 875
             +  + + P +   ++  + DS   +  L  ++  +       +        LE  +  Q
Sbjct: 958  YQAADADDPSLLDSLRAAVIDSELRRAGLDCNLQSMVMEGLGYVLKTPLGGPLEQLQLSQ 1017

Query: 876  SSIEKIFVNIPAKMAIESIGIH--------------------------------LTGFAD 903
              +++    +   + +  +                                   LTG  D
Sbjct: 1018 LGLKQRIHELSFDLPVGHVRTKDLVQAFHCSPNARFGGRYIDHLATLGVNSRGFLTGSID 1077

Query: 904  RIDLLKSG-FVDITDYKT 920
             +          + D+K+
Sbjct: 1078 LVFCDPHQSRWWVLDWKS 1095


>gi|309782347|ref|ZP_07677073.1| UvrD/REP helicase [Ralstonia sp. 5_7_47FAA]
 gi|308918883|gb|EFP64554.1| UvrD/REP helicase [Ralstonia sp. 5_7_47FAA]
          Length = 1173

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 71/777 (9%), Positives = 170/777 (21%), Gaps = 70/777 (9%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTG 237
               D L    + +  +   ++ +        LM      A  +  +      +++     
Sbjct: 363  ALGDALIDRYQAYKRQARAMDFTDLEWEAARLMQQDDTAAYLQVRLDARYKHLLLDEFQD 422

Query: 238  SIPATARLMSTVANHPNGA----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
            + P   R++        G      V    D       +     +  +             
Sbjct: 423  TNPMQWRILQGWLAGYAGTGTQPSVFLVGDPKQSIYRFRRADARLFDAAREMLVAE--FN 480

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP--- 350
             ++ +           ++ +  V  +   R      +             +L   +P   
Sbjct: 481  ATVLRTNRTRRNAPAVLEWVNAVFLQARARGDYPIYAEQSTAVDAPMGQALLLPLVPVSE 540

Query: 351  --NIQKCFSDVALIEADNER------EEAISIAIALRMSLDENK------------KKSA 390
                 +      L E   E        E   +A  LR      +                
Sbjct: 541  AEQADEAAPRDTLTEPREEAGDSQRYAEGRQVAACLRALHANERIREGGIERAVRWSDFQ 600

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            L+   +      +  L   G+         L  TL +  L +LL+ +      +++A ++
Sbjct: 601  LLVRRKRYLADYERALRDAGVPYLSPRRGGLLATLEALDLCALLDFLMTPQADLSLAHVL 660

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
            + P+                       G         L +L     A+            
Sbjct: 661  RSPVFAASDEHLIALA-------QFGEGAAALTWWERLTALAGQADASDTLRYAHRMLSR 713

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
             L+         L+DHI+        Y     +   +  +++        L         
Sbjct: 714  WLAVARTLPVHDLLDHIVYTGELKRRYAERAPAANRDQVLANLDAFLKLALDLDGGRYPS 773

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE----KSS 626
                +      +      S         +A      ++    +D   +         ++ 
Sbjct: 774  LPKFMAELRAIRQGDEDESPDEGMQGDTEAPDAIDAEVANEGLDAVQILTVHASKGLEAP 833

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA- 685
             + +L +  S        IL     G            +            ++       
Sbjct: 834  FVVLLDSHHSDARVDTAGILIDWPPGAQAPAHFSAFGKTSERGLAREPLFKQENALAERE 893

Query: 686  ---HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                 +      R  +    +      T A    +                         
Sbjct: 894  NWNLLYVAMTRARQALIVSGVANKRDATAAQSLDEGDAPEVDGTASWYTLLASAGVASPA 953

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
              LD                        + +                    +       D
Sbjct: 954  AMLDDVADSVSSAAGHELVSYHDFRAPLTVTVRVG----------AAGAPAEGAADIVFD 1003

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                 +G L H ++  L ++ + K  P+   + +    +   + +     D        +
Sbjct: 1004 QGAVAQGELLHAVLERLTRRGLPKQAPDGETIARWFGATGVTQADATRAADA-----VRR 1058

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
            +  +         +  +     I       ++        DR+    +  V + DYK
Sbjct: 1059 MLSAEALAHVFDPARFDAAHNEIELFGRDGAL-----LRIDRLIERGN-EVLVVDYK 1109


>gi|332992693|gb|AEF02748.1| exodeoxyribonuclease V subunit gamma [Alteromonas sp. SN2]
          Length = 1205

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 80/747 (10%), Positives = 169/747 (22%), Gaps = 92/747 (12%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           TI V +      +  +  +  G    +   LP       V     TA L+L  +  P  S
Sbjct: 33  TILVESPGMQHWVSMQLAKEQGVAMNLDFPLP-------VRFMWNTARLVLGKDKVPKQS 85

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS---------------PANAIWLA 149
             +R + + R+  +        +         S                       + LA
Sbjct: 86  PYRREVLVWRIDALLLEASGLEVSGQEASLQSSAAFEQVNKYWLQAGSEQEQGVQRLQLA 145

Query: 150 KNLADIIDIIETEEKKWEDLHALKNE---KYGMWWLLAADFLKIASKYWTERLVELNASS 206
             LAD+ +        W                 W          S+ W   LV+     
Sbjct: 146 TALADVYEQYLLYRPDWLFAWEESQRKSNDESEIWQ---------SEIWR-HLVKQEPLH 195

Query: 207 PVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
           P       + A       +         I++       P        +A H +  I    
Sbjct: 196 PARLHQLTLTALNNGDHLKSGDSELPNRIVVFAINTMAPQLIAFFDALAAHIDIHIFHLN 255

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ------------YSLAKLLDFLDI--KR 307
              +      +               +    Q              L  LL  L+     
Sbjct: 256 PSVNYWGDAKSDSELARQLRMDGLEKWMQQDQSNPLLGNLGQQGRELFNLLTDLETFEVS 315

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                +   S       +    + +      M    I   +  N       V ++   + 
Sbjct: 316 AFDAPIPADSETGETLLLNQIHNDILEALPAMPFASIQSTEADNTDNADDSVTIMCTHSA 375

Query: 368 REEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------------TRFGI 411
             E   +   L   L ++         ++             +                +
Sbjct: 376 LREVQVLHDHLLHWLSQDSSRTPSDVLVMCPAIENYAPFVDTVFHRVGTKPLGGNGPVRL 435

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-------- 463
              I+   P+      +   +LL+          I   ++    +  F            
Sbjct: 436 PCSIADRSPMDAEPLIAAYMTLLHLPDSRFGVSDIVDYLQLDAVQKRFSIAQDDIDQMTV 495

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
             +  +    +      N       ++        ++    +    S    +D      +
Sbjct: 496 WLKQAHIHWGLNGSHKANVSSGATHENTYSWWWGIRRLLLGMLAPDSEGVIDDMLTIPDV 555

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                  +  L+            L+           L  + L +    P    E     
Sbjct: 556 EGQSTVTLGKLIHVIELLGRFATELNTPRSPNAWGADL--LALRDTCFTPTKEQEHSWDL 613

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS---STLFILGTLESRLLN 640
           ++ + + +              +  +  L+      P          + +   L  R + 
Sbjct: 614 IAKVAADLSARCEEADYTYDLSLRQVRELLLSRFSSPDAGNHFMTGQVTVCSMLPMRSIP 673

Query: 641 FDTLILGGLNEGVWPKNTAK-NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LI 698
           F  + + GLN+  +P+ +      L       +      + +       E     R  L 
Sbjct: 674 FKKVCILGLNDSEFPRKSTPLGLDLMAGPDRRVG--DRSRRLEDRYLFLEAIISARESLY 731

Query: 699 YTRSLRE--NNIPTIASRWLQRLLVLG 723
            +    +  NN     S  L   L + 
Sbjct: 732 LSYQGNDVKNNSERQPSLVLGEFLDML 758


>gi|292656941|ref|YP_003536838.1| UvrD/REP helicase domain-containing protein [Haloferax volcanii DS2]
 gi|291372676|gb|ADE04903.1| UvrD/REP helicase domain protein [Haloferax volcanii DS2]
          Length = 1174

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 91/955 (9%), Positives = 212/955 (22%), Gaps = 100/955 (10%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            +        D  ++  L   +   +          +   +  D +            +S 
Sbjct: 182  EAAYPSGDHDAGVAEMLERALRYCRDRRLTTEAFRVELERTRDAVYGDGEPDSFEDVVSS 241

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF---LKIASKYWTERL 199
                      A         +     +    N  Y  W     D    L    + + + +
Sbjct: 242  VERCLGDYEAAGERARDSVSDVDRGRIVEADNALYHAWGARIEDLCETLSTYRETYRDAV 301

Query: 200  VELNASS--------------PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
             E    S                      +R       +     +I+  +          
Sbjct: 302  REFGVLSHIDVSYLVDAYFGGEFEDFDRELRDHVLGKYRSRIRSLIVDEAQDVSAIQHAA 361

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS--------SNTTYSTHPQYSLA 297
            +S +        VL   D      +W           +            +      +  
Sbjct: 362  LSHLVTPE--VRVLGCGDVLQGIYLWRHADPSLFESATTSGRYLGIDWDVHENRTAATTY 419

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
            + +  +      V               + ++        D      +            
Sbjct: 420  RCVPAIASAVNTVAEPIFGDPARGNIGDLDAEYTPLEAARDEVEETAVHVSSFTGVGHPG 479

Query: 358  DVALIEADNEREEAISIAIALRM------SLDENKKK--SALITADRNLARRVKLELTRF 409
                   D  R EA  +A  +          DEN       ++   ++            
Sbjct: 480  TSTWANPDGGRGEANILATHISRGISDGTFADENGDPLGITVLFRRKSRMSDYDAAFEAE 539

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            G+ +   A   L        +  + + +           LV          E        
Sbjct: 540  GLRVRN-ASENLFDCPAVRAVFDVCDWLVDSASPEGTRRLVTESGLGLESLEGIFEANAW 598

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD---- 525
            +++ V    ++ +      ++L   R    + +           EE      L  D    
Sbjct: 599  SVDRVLDSADEGALTEAQRETLAALRRLRDRRDVFETFPARTYVEEVVGALALRADPHGD 658

Query: 526  ------HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP-NLWFE 578
                           +     + +   + S+ D   L     +       R    +  ++
Sbjct: 659  FGDVDPAQRVANADALVETIAQWAGDEHHSLPDLLDLVEPFREEPDAGPTRPSSVDADYD 718

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-------IDGETVKPKIEKSSTLFIL 631
               +T+        +           W              I G          + + I 
Sbjct: 719  VLFQTVHRAKGDQDDVVVIADPGFNIWTQGPHAQRFVAQGNIAGLAPPTDASAPTDVTIP 778

Query: 632  G-------TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
                      +    +                    +  +       L      +     
Sbjct: 779  PFDGGLYDPSDGWQRDVGLRWATARWRDTAVPTADPDVLVGPPRLRRLAENERAESW--- 835

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL---------------VLGGTDFFD 729
               +         +     R         RWL  +                    +D   
Sbjct: 836  RLLYVALTRAMDHLMIPLPRTFPGGRPRDRWLDSIRDGLRFPDGCTETYTLAPIESDPNS 895

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY-----SFSEIKQLINDPYA 784
               + G    D   +                 P+  +   +     + S +  L  D   
Sbjct: 896  ERIRIGVNDADLLARRHRKGSSTPLPEVAVRAPISDRLAPWVPRFVNPSTMYPLTKDKDR 955

Query: 785  VYARRILK----------LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN-H 833
                 +L            + +P   +     + G+  H ++TEL+K+ +++        
Sbjct: 956  YALAHLLGEPLHTETNDVAEDLPLVFERMGPDEVGSCVHGVLTELVKREVSERAVRSMGD 1015

Query: 834  LMKQIIDSHFEKENLPPHIDII--WRHLFHKISHSFLEHE-EKIQSSIEKIFVNIPAK-- 888
             ++ + D    +      +D        F  +   FLE +     +  E + V  P    
Sbjct: 1016 EVRDVFDEVVHEREPGIGVDERDGLFAFFSDVLDDFLESDLWARIAEAETVVVERPVDGL 1075

Query: 889  MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
            +++  + I + G AD + +  SG + +TD K       E  ++  + Q++     
Sbjct: 1076 VSLGDVEIEVHGEADFLTVSPSGEIHVTDVKASLTDLTEETRRRYELQVAAYGYL 1130


>gi|67924839|ref|ZP_00518236.1| ATP-dependent DNA helicase PcrA [Crocosphaera watsonii WH 8501]
 gi|67853326|gb|EAM48688.1| ATP-dependent DNA helicase PcrA [Crocosphaera watsonii WH 8501]
          Length = 772

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 79/727 (10%), Positives = 184/727 (25%), Gaps = 128/727 (17%)

Query: 40  NPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI---------LPI------------- 77
           +P     +     T +A +E++     +  ++  +         LP              
Sbjct: 54  DPES---ILAVTFTNKAAREMKDRLERLFAQEMALKQQGQPFNSLPEYDQKRLLSQVYKK 110

Query: 78  ------IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
                 I +   +       D+    +        +R   +     +       ++K   
Sbjct: 111 TTKKLWIGTFHSLCARILRYDVNKYQDEKKRQ--WERNFSIFDESDVQSLVKNIVLKQFN 168

Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
            +     P +   AI  AKNL              E    LK   Y          +   
Sbjct: 169 LDDKKFNPRTVRYAISNAKNL----------GLSPEA--YLKENSYA-----KGRVIAEV 211

Query: 192 SKYWTERLVELNASSPVG------YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
              +  +L   NA                  +   +        I++     +      L
Sbjct: 212 YNEYQTQLAANNALDFDDLILVPVRLFQQNESILGYWHS-QFKHILVDEYQDTNRIQYEL 270

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           +          ++    +       W      + +I        +   + +A     L+ 
Sbjct: 271 IQ---------LLTTNAEPRKSEWNWE-----NRSIFVVGDADQSIYSFRMADFTILLNF 316

Query: 306 KREDVKRLGNVSNE----MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
           + +    L +        +              +     N+  ++  +   +    ++  
Sbjct: 317 QSDFGDGLPDEDTRTMVKLEENYRSTETILQAANQLIENNSQRIDKILRPTRGEGEEIYC 376

Query: 362 IEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTRFGINIDISA 417
            +A++ER EA  +   ++  ++ N +      AL+      +R  +    R  I  +I  
Sbjct: 377 YKAEDERIEADFVMGKIQEMVETNPELNWGDFALLYRVNAQSRPFEDNFIRNNIPYNIVG 436

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVAL 476
           G             + L  I    D +++  ++  P    G      L +A   LE+   
Sbjct: 437 GFKFYDRQEIKDSIAYLRLIVNPFDTVSLLRVINSPRRGIGKTSIDSLLKASQELEIPLW 496

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
              ++   +  L                               A      + +  + +  
Sbjct: 497 EIVRDETSVKTL-------------------------------AGRAAKSVNKFASMIKE 525

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
            +       G        +L+                 L    E  +  + + +  E   
Sbjct: 526 LQGKLKELSGTEIFDQIMELSGYVDDLKTKGTEEADNRLENIYELYSAIAQYQEENED-- 583

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                       +T       +    E    + ++    ++ L F  + L GL +G +P 
Sbjct: 584 ------TSLQGYLTNASLASDLDNLDEGQEKVSLMTLHSAKGLEFPIVFLVGLEQGTFPH 637

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
             + N  LS   +  L      +   Q        +  R      S        + S+++
Sbjct: 638 VRSLNDPLSLEEERRLCYVGITRAQEQLF-----ISHARERYVWGS----KEMKMVSQFI 688

Query: 717 QRLLVLG 723
           Q +    
Sbjct: 689 QEIPEEL 695


>gi|312871722|ref|ZP_07731810.1| putative ATP-dependent nuclease subunit B [Lactobacillus iners LEAF
           3008A-a]
 gi|311092664|gb|EFQ51020.1| putative ATP-dependent nuclease subunit B [Lactobacillus iners LEAF
           3008A-a]
          Length = 1157

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 102/891 (11%), Positives = 238/891 (26%), Gaps = 135/891 (15%)

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
           DL+++ +E            L+I    + + L +    +       +++   +  +    
Sbjct: 138 DLNSISHEAVTEETSRKLHDLQIIYDEFIKMLGDH--FTTKDGIQLILKTVLDKKLSIDN 195

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
                 G +    +   ++  +A   + ++                  +   N       
Sbjct: 196 MNFFFCGFSYFSLSELNIVKIIAKKAHLSVFAF------------KTKDAQINDKVMEGD 243

Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
           Y    Q ++AKL++F ++            N        ++  +               N
Sbjct: 244 YDYIVQSTIAKLINFFNVNSLKFSTKEYGYNINLNNKEKLNAIWT-------------GN 290

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL 404
                    + V LI+AD+   E   +A  +   +       K   ++  + +       
Sbjct: 291 IPQQGLDLTNYVHLIKADSRYAEINFVAQTIYQQVVFNHYRYKDFLVLAPNLSEYETYLT 350

Query: 405 -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPE 461
              ++  I++       +       ++ ++ +          I T++K  L   ++   +
Sbjct: 351 PIFSQNNISMFNDLQKQMKFHPLVVMIENIADINDMGFKTQYIITILKTRLLIPEWYTDD 410

Query: 462 KYLSRAKNALELVALRGNKNSYDI----MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                  + LE   L  N N         D     +  +              +   E+ 
Sbjct: 411 IKFIADVDLLENFVLAHNINHQLWKKSFYDFVDNNISHLDQINEKVEKLDKLRQFIIENI 470

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +  +  +  +      +  +         N  +  W        +N  ++          
Sbjct: 471 DNLITQLHKLTNVQEAVTLFWNFLLKNKINKKLEKW--------RNTAINNGDLQLAQQP 522

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           E+    L+ L    +      + N   + DI+                  + +      +
Sbjct: 523 EQIWALLNKLLKDYVLIAE--EFNTENFFDILISGFSEANFSQIPSVLDAVTVSEIGMVQ 580

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY-----------IGQAAH 686
             +F  + + G      PK   K  FL+    ++LN   A++            + Q   
Sbjct: 581 NNSFKQVFIIGAVNNSLPKIQNKPGFLNIENINELNNSIADEQQYIENNQEVNNLDQTYQ 640

Query: 687 DFEMANGTRH-LIYTRSL-RENNIPTIASRWLQRLLV--LGGTDFFDNLKKRGQCYLDW- 741
             ++ +     +  +  +   +N    AS + Q +            +L +  Q  L + 
Sbjct: 641 FGDVLSLASDGVYISYPIINVSNEKMEASIFYQDIKNTLNLTEYVQHDLPENQQQLLSFI 700

Query: 742 -------------------------------TRKLDYTTKQ-------PHYKRPKPFPPL 763
                                             L     Q       P    P     L
Sbjct: 701 TTPQASLGYIVYLKNKTNDDISNLLALTPSNQALLFDNVIQASSFKNKPVNLTPALAQEL 760

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                  S S+++    + Y  +    L L     F+ +      G  +H  +  L+K  
Sbjct: 761 YGNNINISISQLETFYANSYEYFLTYGLHLHKR--FENELTNIQSGNYYHETMDRLVKYL 818

Query: 824 INKNTPEIN------HLMKQIIDSHFE-----KENLPPHIDIIWRHLFHKISHSFLE--H 870
                           ++   I    +     +E L    +        + +   +   H
Sbjct: 819 KQHKLDFAELTKDKISVILANIQDELKTKGSYRELLGDPFNEFLFKCLDRTTKKVVNYWH 878

Query: 871 EEKIQSSIEKIFVNIPAKMA--IESIG------------IHLTGFADRIDLLK--SGFVD 914
           +   Q+    ++  +       I  +             I L G  DR+DLLK     + 
Sbjct: 879 QNMFQTKFCPLYSELSFGNKEYIAGLSYQFIDKQQKTHHISLRGKIDRVDLLKDCDNEIL 938

Query: 915 -ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG-SFSQIDCRKVANLFY 962
            + DYK+          +  I  Q+    + L+        +   +   FY
Sbjct: 939 QLIDYKSSAKKFDFNLFKNGISMQMLSYLSVLQDNSHIFSTNPVNIFGAFY 989


>gi|261856131|ref|YP_003263414.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2]
 gi|261836600|gb|ACX96367.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2]
          Length = 688

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/568 (10%), Positives = 149/568 (26%), Gaps = 68/568 (11%)

Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK--GTKGPIIIAGSTGSIP 240
            A   L    +        L+    +G  + L++++A    +       +++     +  
Sbjct: 172 RALAGLFDQYQRQLTACNALDFDDLIGRPVELLQSDAAVRERWQARVRYLLVDEYQDTNT 231

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
               L+  +        +    D H     W     ++ N  + +              L
Sbjct: 232 TQYELVRLLVGKIGA--LTAVGDDHQSIYAWRGAKPENLNRLADDFP-----------NL 278

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
             + +++        +       + +I+            +  + E              
Sbjct: 279 HRIKLEQNYRSVNSVLKAA----NHLIALDTTTASKQLWSDIGMGEPH-----------R 323

Query: 361 LIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKLELTRFGINIDISA 417
           +I A    +EA  IA  +           +  A++    + AR ++  L +  I   ++ 
Sbjct: 324 VIVAATAEDEAERIATEILHRHFRAQTEYRDFAVLFRGNHQARLIEQALRKLNIPYSLTG 383

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVAL 476
           G             S L  +   +D  A   +V  P  + G                   
Sbjct: 384 GQSFFERAEIKDAMSYLKLLVNPDDDAAFLRVVNTPRREIGPTTIEKLGGFARERRSSLF 443

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
              ++        +   DR+    +      W   +  +    A+ ++  +   I     
Sbjct: 444 AAARSIGIQSVFDNRAADRLNRFCD------WLDGIRAQPDRDAIDVIQQVFDAIDYPAY 497

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
            +  +                         D   +    W +   K   +      E G 
Sbjct: 498 LREQE-------------------STPKAADRRWQNVEEWLDWLAKISDTQVEAESEGGE 538

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                 +  +     L+     + + + S+ + +L    ++ L F  + + G+ E     
Sbjct: 539 SATKMDLPALAQRMTLLGILDQQTREKDSNAVALLTLHAAKGLEFGHVFMAGMEE----- 593

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
               +    R    D      E+ +          + T  L   R        T  SR+L
Sbjct: 594 ----DILPHRDCIEDEARLAEERRLCFVGITRARLSLTFTLTKRRRRYGEWKDTEPSRFL 649

Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
             +         + +++  +      R+
Sbjct: 650 DDIPADLLQWQGEGIEQPKEVSQAQGRE 677


>gi|240139167|ref|YP_002963642.1| UvrD/REP helicase [Methylobacterium extorquens AM1]
 gi|240009139|gb|ACS40365.1| UvrD/REP helicase [Methylobacterium extorquens AM1]
          Length = 1124

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 81/821 (9%), Positives = 196/821 (23%), Gaps = 57/821 (6%)

Query: 149  AKNLADIIDIIETEEKK-WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            A  L    + +     + W  L A    +     +     +    +        L+    
Sbjct: 303  ADRLQASAERLHVACCEAWRRLKANAASELLARLVGTVRTVLDRYQARKRDGALLDFDDL 362

Query: 208  VGYQIALMRAEAEHLMKG--TKGPIIIAGSTGSIPATARLM-STVANHPNGAIVLPGLDC 264
            +     L+RA              +++     + P    ++       P+GA        
Sbjct: 363  IAAAATLLRAHETVRQALGRRYRHVLVDEFQDTDPIQTEILWRLCGELPDGAADAWTERV 422

Query: 265  HIPTAIW------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL--GNV 316
              P A++        I        S+               +  +       + +     
Sbjct: 423  LRPGALFLVGDPKQAIYRFRGADVSTYVRARDRILARSPDDVLAISTNFRSCRSILAYVD 482

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                   + V    F   D     +         ++                 EA ++A 
Sbjct: 483  ERFGDILNGVGQPGFAALDAFHPDHDRGPCIAALDVPAGADGAKRTAEALRDAEAEAVAD 542

Query: 377  ALRMSLDENKK-------------KSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
                 +                    AL+    +   R +  L   GI +   AG     
Sbjct: 543  LCARLIGHQLVTCKRAGTRTLRAGDIALLAPSGSDLWRYEEALEARGIPVSTQAGKGFFR 602

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                  L +L   +    D +A+  L++ P       ++ L    + L     R      
Sbjct: 603  RQEVHDLIALTRVLADPRDTLALGALLRGPAVG--LTDEELLDLVDGLPRDPERPESVPR 660

Query: 484  DIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
              + +  + V   +A           +  L     ++    VD ++  + P+V  + + +
Sbjct: 661  LRLHVDVAQVNHPVARPVLERLQALAKRALGTTPHDILSQAVDALM--LRPVVQQRHDGH 718

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
            +     +I  + +++              +   W     +T+           S +  +A
Sbjct: 719  AERALANIDLFLEMSRPFAVRGLRAFAGAMRAAWEGR-TRTVEGRPDAQEAAVSLLTMHA 777

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             + ++    +    T + K    + +                     +            
Sbjct: 778  SKGLEWPVVIPINTTTRTKAVSGALV---------------------DRASNCLYCPVFG 816

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
                     L  +  E    +    +  A   R  +      E    T  S  +  L + 
Sbjct: 817  VRPAGYDEALEAEKREVGNERVRLWYVAATRARETLVLTRFAEPGASTSWSA-VVDLGLA 875

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
                        G   +        T +    +          +    S  +        
Sbjct: 876  DLPSIDVERLPVGTPAVAPEFANGQTREIFAAEAAAVARQRRLRWIVPSRGDAAGPETSG 935

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                          P  +      +RG L H ++ E++    ++   ++      +    
Sbjct: 936  APGLVEGGTDGGRGPGGRPTGS-RERGILIHKLLEEILTGEASEG-DDLGRRAGLLARQL 993

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                      ++    +   ++ +    E        +  + +    ++        G  
Sbjct: 994  GLGTGDAAGAEVDLAEVAASVTRALGLPEIAGIRERLQAELPVFGFESLADEDQATAGVV 1053

Query: 903  DRIDLLKSGFV-DITDYKTGDNPKKETAQKLIDPQLSLEAA 942
            D I     G    + D+K+ D    E        Q++    
Sbjct: 1054 DAIACDAVGKPDIVVDWKS-DVDPAEAVLADYRRQVARYLL 1093


>gi|218886850|ref|YP_002436171.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757804|gb|ACL08703.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1244

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 72/729 (9%), Positives = 164/729 (22%), Gaps = 120/729 (16%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             TLV    +     +    +     T+RA  E+        G+ +  LP   +L  +  E
Sbjct: 587  RTLVGRVLHLVETGIDARRILAVTFTRRAAAEMDERLATALGEDA-PLPRTDTLHALAFE 645

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
             +                          +L+       +  +  P+ P         AI 
Sbjct: 646  YWHRATPTPP------------------VLLSEEAARRVFAEANPDEPAQRLREAWEAIG 687

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            + +                                            +TE+    N +  
Sbjct: 688  VCRE--------------------KMRSCLAEH--------APLLARYTEQKAAWNLADY 719

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                   +     ++       +++       P    L+  +A    GA      D    
Sbjct: 720  TDLLEFWLDQMQNNIYASPWRHVLVDEIQDLSPLQLTLVRALA-PRGGAGFFGIGDPDQS 778

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               +                                D+     +   ++S      +   
Sbjct: 779  IYGFRGA---------------------------HGDVAAFLREAWPDLSVVALEEN-YR 810

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR-------- 379
            S + +      +         +   +    ++ L EA     EA  I   +R        
Sbjct: 811  SSARILDFAGGLMQGRSACGPLRAARDMPGELHLFEAPTAEGEAAWIGEQIRGLIGATSH 870

Query: 380  ----------------MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL-S 422
                                 +    A++   ++L  +++  LTRFG+   +       +
Sbjct: 871  SLLDAGHGRTRRGTVLDEGGFSPGDIAVLVRVKSLIPQLQRTLTRFGVPCAVPEAEAFWA 930

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGNKN 481
                + IL +    +   +        +   L+      E       + L L A     +
Sbjct: 931  DQRVALILGAAGRMLGIGSTSSPAGPALPAGLSHRRLVAEGVHPSLADRLGLDASPFPMH 990

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                    +      A    +  V          +   A +        + P        
Sbjct: 991  RGGDAADNAHGAPEAAAATGSPAVSGSPDGSDGPEASGAAIDPAGGEAPLRPDAEIPARD 1050

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                 +       +  +     +           W     + LS  +             
Sbjct: 1051 TPHEVDCPPKVLARGPLGVAAYLRETP-PFDDLFWQSSAFRALSRAYD-----------T 1098

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
               W  ++  +     ++     S  + I+    ++ L F  + L  L E          
Sbjct: 1099 HGGWAGLMNWISLQSELELVRRGSEKVQIMSLHAAKGLEFRAVFLPAL-EDGIMPFAGAG 1157

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTI----ASRWL 716
                +  +   +  T      +    +         L  + + R            SR+L
Sbjct: 1158 TLTGKPQRDGASPDTRTDMDEERRLLYVGMTRASEGLFLSCAARRQLYGRELRLKPSRFL 1217

Query: 717  QRLLVLGGT 725
              + + G  
Sbjct: 1218 DDVPLEGLR 1226


>gi|84625871|ref|YP_453243.1| exodeoxyribonuclease V gamma chain [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84369811|dbj|BAE70969.1| exodeoxyribonuclease V gamma chain [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 1137

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 106/959 (11%), Positives = 227/959 (23%), Gaps = 121/959 (12%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
            E  R  P  PLL   V + +P     + L+S      G  + +     + G+ V     
Sbjct: 26  QELRRPMPGQPLLQPEV-VLIPQVAMRRWLQSTLAAEHGVAANL--EFLTPGEFVARALE 82

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
            +L  + +     +   RL                    L P +             LA 
Sbjct: 83  RNLGAADDDLDMATTQWRL-------YATLQSDLGRDAALAPLADYLADGDALKPWALAG 135

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            L  + +  +   + W            + W   AD     ++ W               
Sbjct: 136 ELGSVFEKYQAWRRDW-----------LLRWEAGADPDDPQARLWRSI--ATGRQYRARR 182

Query: 211 QIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
               +   A       +G    +         P   R+++T A        LP       
Sbjct: 183 IGHYLDRHARADGPLPQGLPPRVFAFAILNISPDVLRVLATQARVGTLHFYLPTPTQGYW 242

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKL----------------LDFLDIKREDVK 311
             +      +  +               L                   +  L        
Sbjct: 243 GDLQTLRQRRREDGAVQLFAEHVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEITAYAD 302

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
            L +    +    +  S           R    +   +P +      + +        E 
Sbjct: 303 PLDSGRRTLADGGLGDSLLRRMQSDLFHRRAPAVPALLPAVNLHDPSLQVHACHTRLREL 362

Query: 372 ISIAIALRMSLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDISAGI 419
             +   LR  LD+         ++ A+++ + +        +         +   ++   
Sbjct: 363 QVLHDQLRALLDDPRFDPPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYALADAS 422

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY--------LSRAKNAL 471
           PL++   + +  +LL           I  L+                        A  A 
Sbjct: 423 PLASEPLAEVFLTLLGLPIARFGLHEILDLLASAPIAAAAGLDEAGLERLRSWLHAAGAR 482

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
             +     +      D        +                               L  +
Sbjct: 483 WGLDAAHRRQHQAPGDDAYTWRFALDRLLLGHASGADDDIDGVAPWPQLEGSALAALDTL 542

Query: 532 TPLVTYKTNKNS-TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
             L+       +     ++  +W +  +  L+ +              +  +T+   F++
Sbjct: 543 LRLLRVLERHQAVLADAMTPVEWRERLLGLLEALIPTTPTAPRAQRALDRLRTMIDQFAR 602

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
                        E +      + GE+       +  +     +  RLL F  + L G+N
Sbjct: 603 DAVRADYAGKVPAEVVRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRVICLLGMN 662

Query: 651 EGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
           +G +P+             L    +   +  T E+        F  A    +L Y  +  
Sbjct: 663 DGDFPRRDPAAGLNRLTAELGTDRRRHGDRSTREEDRFLFLQLFASAQEVFYLSYLGADA 722

Query: 705 ENNIPTIASRWLQRLLVLGGTDFFD-------------------------------NLKK 733
            +      S  +  LL                                           +
Sbjct: 723 RDGSVREPSVLVSELLSSAAHYHAASNALDTLVVRHPLQPFAAAAFGALGDESDAGADPR 782

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS----EIKQLINDPYAVYARR 789
           R      W   +D    Q     P     L A       S    E+++L  DP   + R 
Sbjct: 783 RFSYRRQWRPAVDSLVGQRQPLAPWVAGALPADDTALQASVSIDELRRLFADPAGQFLRH 842

Query: 790 ILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
            L +       +D D        RG   + +  ++ +  +  +T  +   ++        
Sbjct: 843 RLGMRLPDPGGEDSDLEPLLAPTRGLDQYGLQQQVCEAALAGDTEGLYERLRA---RALL 899

Query: 845 KENLPPHIDIIWR-HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                    +  R       + +F +   +  +   +        + ++   I L    
Sbjct: 900 PSGPLGRRQLDERVAQLRPYADAFRQWRGQSPAESRR--------LQVQIGDIELHARV 950


>gi|206559482|ref|YP_002230243.1| putative exodeoxyribonuclease V gamma chain [Burkholderia
           cenocepacia J2315]
 gi|198035520|emb|CAR51399.1| putative exodeoxyribonuclease V gamma chain [Burkholderia
           cenocepacia J2315]
          Length = 1120

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 87/883 (9%), Positives = 194/883 (21%), Gaps = 54/883 (6%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  ALL        R  P  P       + VP+    + L  +     G  + +   
Sbjct: 18  HETLADALLEDLAAFPARNGPWAPQ-----QVIVPSAALRRRLELDIAARNGVCANVEFT 72

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             +       ++    +      P  S       + R   ++            P     
Sbjct: 73  YLA-------QWLWAQIGRVLTVPARSPFAPDRLVWRCYRLFAQAADGAPWLASPRLAAY 125

Query: 138 LPISPAN-AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAADFLKI 190
           L  S       LA  +A ++D   T   +W                       A D  + 
Sbjct: 126 LSASDDAMRYELAHRVAAVLDHYLTYRPEWLAAWQAGESVLAGDGAPRGISDAARDDERW 185

Query: 191 ASKYWTERLVEL-NASSPVGYQIALMRAEAEH---LMKGTKGPIIIAGSTGSIPATARLM 246
            +  W   L EL ++ +P  ++  +     +            + +       P    L+
Sbjct: 186 QAALWRALLAELSDSGTPPAHRFLVEARHLDADTVARADWPESVSVFALPTMPPLHVALL 245

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
             ++   +  +            I      ++ +               LA+       +
Sbjct: 246 RELSRWIDVRVYALNPCREFWFDIVTAAHAEALDAAGRLDYQEVGHP-LLAEWGRQTQAQ 304

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
              +  L   +        V + +            ++              + +    +
Sbjct: 305 LHMLHELTESAASGDASRFVENPAPTWLARVQNAILELQPEAETGDTPVERGIEVHVCHS 364

Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI----------NIDIS 416
              +   +   L    D +                    L                  I+
Sbjct: 365 LARQLEVLHDRLLAWFDADASLQPSDVLVAVADLAAAGPLIDAVFGTAGTGGARVPYRIT 424

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
              P      + +L   L    +      +   ++       +     +       L A 
Sbjct: 425 GLPPSQANPVARVLLDWLALPERQVGAPELVEWLRVDAVAARYDIDAAALETVQTWLAAA 484

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL---------VDHI 527
              +         + V     T  +          + E    +   L          + +
Sbjct: 485 GARRGLSPRASDDAAVPAPRHTFSDALARLFLGYAMPEGAAPIGAWLPIEAATGSEAELL 544

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            +                 + +   W++L    L             L    +   L ++
Sbjct: 545 GRLARFTDDLDGFARRLEESHTPRGWSELFADTLARFFDSGAAYADALAGVRD--ALDAM 602

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
            + + E        A      +   +D             +        R L +  + L 
Sbjct: 603 LAAMTEGAPDEALPAAVVRAGLAAALDD--PARGGVPWGGVTFSSLTSLRGLPYRVVCLL 660

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLN-LKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
           G+++GV P     + F    +   L   +  +            A     + YT     +
Sbjct: 661 GMDDGVLPSLARADEFDLMAVLPKLGDRQRRDDERNLFLDLLLAARDRLLIAYTGRSIRD 720

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
           N P   +  +  LL     D    +        D            H  +P      E  
Sbjct: 721 NAPLPPAALVDELL-----DHLALVTAGPDAAPDAVEAARRAFIVEHPLQPFAAAYFEPG 775

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
               S+   +  +    A  A R       P F +         +  +      +     
Sbjct: 776 SELVSYDAERATLASLLAAEASR-DGPREQPFFAQPLPAEPVEPVAFSEFERFWRHPARA 834

Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
                  +M     +                 L  ++    +E
Sbjct: 835 LLRGRLGIMLADAQAELLDTEPFALDFAGSDALAERVLPLLIE 877


>gi|301066102|ref|YP_003788125.1| superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang]
 gi|300438509|gb|ADK18275.1| Superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang]
          Length = 751

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 74/624 (11%), Positives = 169/624 (27%), Gaps = 97/624 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVS 104
           ++     T +A +E+R    ++   +      + +   +       D+  L YN    ++
Sbjct: 56  NILAITFTNKAAREMRERVGKLVDAEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIA 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +    L L + I      L D   D     P              K++   I   + E  
Sbjct: 116 DPAEQLTLVKHI------LADFNLDPKRYDP--------------KSILGAISSAKNELV 155

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
           + +       +    +  + A         + +RL    A       +  +    +    
Sbjct: 156 EPQ--TYANEQANSPFTKVVAQ----VYAEYQKRLRSDQALDFDDLIMQTIVLFEKDKET 209

Query: 225 GT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I +     +  A  +L+  +A   +   V+   D       W     ++ 
Sbjct: 210 LAFYQRKFRYIHVDEYQDTNEAQYQLVHMLAEGYHNLCVV--GDADQSIYGWRGANMQNI 267

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      +P+  +  L       +  +    +V      R                
Sbjct: 268 LDFKK-----DYPKAQVILLEQNYRSTKTILSAANDVIQNNQNRQAK------------- 309

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADR 396
                    +    +    +    A +E +EAI +   +   + +N +     A++    
Sbjct: 310 --------TLWTENREGDKITYYRAQSETDEAIFVIRRIEAEIADNHRKYGDFAILYRTN 361

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++    +  I   +  G             +    +    D M+   +V  P   
Sbjct: 362 AQSRAIEEAFVKSNIPYKMVGGHKFYDRKEIRDALAYFRLVVNPEDDMSFNRIVNEPKRG 421

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G        A                             A + + + +    +      
Sbjct: 422 IGNTSVEKLEA----------------------------FANEHDWSLLEAAANAELSPI 453

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
              A   +    + I  L T + + N T    +I + +    T      L+   ++ NL 
Sbjct: 454 AGKARGQLAKFGKMIQELGTRRKDLNVTEMMQAILEDSGYLSTLRAAHNLEADTRIENLE 513

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                        +     S I      ++D +  L          E +  + ++    +
Sbjct: 514 ELLSVTQGFDSRYQPENEDSDI------FVDFLAELALLSDQDDVEEDAQEVTLMTLHAA 567

Query: 637 RLLNFDTLILGGLNEGVWPKNTAK 660
           + L F  + L G+ EG++P + A 
Sbjct: 568 KGLEFPVVFLVGMEEGLFPLSRAS 591


>gi|269792359|ref|YP_003317263.1| UvrD/REP helicase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099994|gb|ACZ18981.1| UvrD/REP helicase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 653

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/578 (8%), Positives = 134/578 (23%), Gaps = 106/578 (18%)

Query: 159 IETEEKKWEDL-----HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
           ++        L      A        ++       +   + +  ++    A         
Sbjct: 138 VDERRVDPSWLMEAFSAAKGEGNGSAYFR---GEAQRLFEAYEAKMRSQGALDFDDLIHL 194

Query: 214 LMRAEAEHLMKGTKGP-----IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
            ++  + H     +       +++        +   L+  +++     +V+   D     
Sbjct: 195 PLKILSTHREALERELDSIEWVLVDEYQDVNRSQYMLLKRLSSRGQRTVVV--GDPDQAI 252

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             W             +                            G     +        
Sbjct: 253 YGWRGADVSMILNFDKDFQ--------------------------GAKVTVLEQNYRSTG 286

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-- 386
                 +    RN+D  +  +         + +++A N+ E++  +   +     E    
Sbjct: 287 HILEGANCVIARNSDRPKKNLWTAASRGEKIRILKARNDEEDSRCLVDWILELQGEGYAL 346

Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
           K  A++     L+R  +  L   GI   +  G+          + +L+    +  D ++ 
Sbjct: 347 KDMAILYRVNALSRLYEQRLIEAGIPYRVIRGLGFYDRKEIKDVLALMRLAIQPRDLVSF 406

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
             +V  P    G        A          G      +     L               
Sbjct: 407 ERMVNVPQRGIGAKSTEALWAWMGQLEAQDPGEFWRSVLEGDAPL--------------- 451

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                     +E    L   +L  ++     +             +  +           
Sbjct: 452 ------KGRAREGIRALARGMLGILSLRGNIRLAVRYILEEYGYGEHLER---------- 495

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                      +   +       +++        + +        L     V        
Sbjct: 496 ---------EDQSTFEERLQNVEELMSVLPEGSIDDVLSE---VALFSDADV---ASGDD 540

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            + +L    ++ L F  + + GL E           F +   + D +L   E+ +     
Sbjct: 541 RVSLLTLHAAKGLEFPVVFMVGLEE---------GIFPNAKCREDRSLLEEERRLFYVGM 591

Query: 687 DFEMANGTRHLIYTRSLRENNIPTIA----SRWLQRLL 720
                     L  + + R     +      SR+L  + 
Sbjct: 592 TRAQ----ERLFLSGAARRVLFGSFMMNPFSRFLSEIP 625


>gi|328955121|ref|YP_004372454.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
 gi|328455445|gb|AEB06639.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
          Length = 847

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 75/716 (10%), Positives = 167/716 (23%), Gaps = 110/716 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            +     T +A  E+R     +     +      + +   +       D  L        
Sbjct: 57  QILAITFTNKAAAEMRERIQALMDGGMRGMW---VCTFHAMCVRILREDADLI------- 106

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                   +         +L   I           PI+          +   I   +   
Sbjct: 107 -GYTGQFTIYDDDDS--RRLVRDIMAGAGIEQKQFPINM---------IRSKISAAKNAM 154

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              E+  A  +         AA            RL   NA       +  +        
Sbjct: 155 ICPEEFSAQAST---PPEQKAAK----VYLELERRLRAANAMDFDDLLVRTLELLRARPE 207

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I +     +      + + +A      +V+   D       W      +
Sbjct: 208 VLANYQERFRYISVDEYQDTNHVQYEIANLLAAKYENLMVV--GDDDQSIYSWRGADIAN 265

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +      P   + KL                                   +   
Sbjct: 266 ILDFEKDF-----PHARVVKL---------------------EQNYRSCGNILAAANAVV 299

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADR 396
             N    E ++         +   +A +ER+E   IA  +    D   + +  A+     
Sbjct: 300 RNNAQRKEKRLFTDAGDGERIRAYQASDERDEGRWIASEIDRLNDSGASYEDIAVFYRTN 359

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++    R G+   I  G             + L  +    D M++  ++  P   
Sbjct: 360 AQSRILEDMFLRAGVPYRIVGGTRFFDRAEIRDTMAYLKMVVNPADEMSVKRVINTPRRG 419

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G           A+E            + +   L     +   +   + H   R+  E 
Sbjct: 420 LGSTSIAKIEQI-AIENRCSFFQACEIAMAETGRLSAKVRSALADFVQIVHEGRRMDGEL 478

Query: 517 KELAVLLVDH---------------------ILQCITPLVTYKTNKNSTCGNLSISDWTK 555
             +   ++D                      I + +     ++       G L      +
Sbjct: 479 VRVVEAIIDRSGLIRAHHNEMTVEGEGRVENIREFMGVAAEFEETHEDIEGTLESLAELR 538

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                                  E+    S+  S          A        +  L++ 
Sbjct: 539 AAGVSGVPASDAGVSVRGPHAVAEDASAPSAQVSPSDRAAEIEDAYGPLACKALPALMEW 598

Query: 616 ETVKPKIEKSST----LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
             ++  ++  +     + ++    ++ L F  + + GL EG++P     +          
Sbjct: 599 LALRSDLDALAGGTHAITMMTVHSAKGLEFPIVFVAGLEEGIFPHVNGFS---------- 648

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIY-----TRSLRENNIPTIASRWLQRLLVL 722
                  K   +    +      R  ++     TR    +      SR++  +   
Sbjct: 649 ---DDPAKLEEERRLAYVAITRARRRLFLSYAATRRTYGSTQANPRSRFVSEIPDE 701


>gi|33864717|ref|NP_896276.1| UvrD/REP helicase [Synechococcus sp. WH 8102]
 gi|33632240|emb|CAE06696.1| UvrD/REP helicase [Synechococcus sp. WH 8102]
          Length = 797

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 72/770 (9%), Positives = 184/770 (23%), Gaps = 115/770 (14%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL----PIIKSL 81
           L   +         +P   A +     T +A +E++     +  +K        P   +L
Sbjct: 36  LTHRIAHLIGEHGADP---AQILAVTFTNKAAREMKERLEVLLAQKLAQSQYGQP-WSTL 91

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             V + +  + +    +    +     L   AR++    +K  D     + +       +
Sbjct: 92  PPVDQRQLRSRIYREVSKELWIGTFHALF--ARMLRYDIDKFKDAEGLSWTKQFSIYDEA 149

Query: 142 PANAIW---LAKNL------------ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
            A ++    + + L               I   + +    + L A    +          
Sbjct: 150 DAQSLVKEIVTQELQLDPKRFEPKKTRWAISNAKNQGWLPDQLEANAEGQR-------GK 202

Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPA 241
                 + +   L   NA       +  ++   ++             +++     +   
Sbjct: 203 LTANVYRRYRRALAANNALDFDDLLLLPVQLLQQNEQVRSYWHRRFAHVLVDEYQDTNRT 262

Query: 242 TARLMSTVANHPN---------GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
              L+  +              G  V    D       +             +       
Sbjct: 263 QYDLIKLLVTDGKDPQTYNNWSGRSVFVVGDADQSIYSFRAADFTILMGFQEDFGDQ--- 319

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
                                     ++       +      +     N++ ++  +   
Sbjct: 320 ----------------APDDATRTMVKLEENYRSTATILAAANALIANNSERIDKVLRPT 363

Query: 353 QKCFSDVALIEADNEREEAISIAIALR----MSLDENKKKSALITADRNLARRVKLELTR 408
           +     + L   D+E  EA ++   LR     + + +    A++      +R ++  L R
Sbjct: 364 RGDGELITLTRCDDEIAEAEAVVHRLRTMEAANPELSWGDMAVLYRTNAQSRSIEESLVR 423

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
           +GI   +  G+          L + L  +    D +++  ++  P               
Sbjct: 424 WGIPYIVVGGLRFYDRREIKDLLAYLRLLVNPADTVSLLRVINVP--------------- 468

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                   +       I  L            +          L        +   +   
Sbjct: 469 --------KRGIGKTTIQRLTDAANQLGIPLWDVVSDAEAVRSLGGRSARGLLQFCEL-- 518

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                L   +        +  I    + +    + +              +E    +  +
Sbjct: 519 -----LHDLRRQVQEVAPSELIQQVMEKSGYISELIAEGTDEAEERRRNLQELVNAALQY 573

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            +  E G             +           K   +  + ++    S+ L F  + L G
Sbjct: 574 QEENEEGD--------LEGFLATAALSSDADSKDTAADRVTLMTLHSSKGLEFPVVCLVG 625

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
           L +G++P   + +   S   +  L      +   +        +          +RE   
Sbjct: 626 LEQGLFPSYRSLDDPASLEEERRLCYVGITRAKERLF-----LSHASERRLWGGMREA-- 678

Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
             + S +L  L                        +L    +      P 
Sbjct: 679 -AVPSVFLSELPEALVQGDLPQSGGAALRRERRLERLTRVDRDRPSSAPA 727


>gi|315655698|ref|ZP_07908596.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333]
 gi|315489762|gb|EFU79389.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333]
          Length = 1191

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 102/1130 (9%), Positives = 254/1130 (22%), Gaps = 185/1130 (16%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
            +   LV       + P     +     T++A  E+ + F     + +++L  ++      
Sbjct: 54   IANRLVYWVVNAGIVPEA---ILGLTFTRKAAAEMAARFSLRLDRFASLLESVQERRQTA 110

Query: 86   E--EKFTADLLLSYNLNPPVSNIQRLLELARL---------ILIWRNKLPDIIKDLYPES 134
            E      A       L      + +      +            +   L      L    
Sbjct: 111  EVTAVLKAADFDLNQLRQRFDTLVQRGMTPEMLRHPVSVSTYDSYAGTLLTEFGTLVGRE 170

Query: 135  PLSLPISPANAIW------------------------LAKNLADIIDIIETEEKKWEDL- 169
                 I+ A                            L   L  + +   +      ++ 
Sbjct: 171  SGFTTITDAARYQIMTDVVQSWTGALGTKREGENAENLVNILLSLANDTNSHLVDLAEMK 230

Query: 170  ----------HALKNEKYGMWWLLAADFLKIASK-------------YWTERLVELNASS 206
                        L++ +       A   L                   + ER  EL  + 
Sbjct: 231  QTYRSYHAAARRLQDTESADLNSTALRNLDTIIDTMEFGCNATNIIQAFNERKRELLMAD 290

Query: 207  PVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                    +R   +        +     + +     +  A  R ++ +        V   
Sbjct: 291  FSDQTRETVRLVEQLPAVGESQRERFQLVFLDEFQDTSVAQMRFLAGIFRDCA---VTAV 347

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF------LDIKREDVKRLGN 315
             D +     W   +  S     S     +H   +    + +      L +       L  
Sbjct: 348  GDPNQAIYGWRGASAASMEDFGSIFCTDSHQLLTRTLSISWRNDAVILAVSNRISAELTG 407

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN---EREEAI 372
                   R++  ++      +  ++        I    +  +D+   +A        +A 
Sbjct: 408  APAVAAERNIPRNQDVQSAISKPLQARPGANPGIVYGIQTLTDLQQSQAVVNFFRLWQAQ 467

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
             + +       E    +A++   +N    +   L R GI         +       ++ +
Sbjct: 468  RVKLQGEGVPAEKLPTAAVLCRAKNAIPGLVESLRRAGIPYQTRGMQGILEDPGVRLVRA 527

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
             L          ++               +       A+     R       +     + 
Sbjct: 528  ALEITDNPEKSASLLL--------LLDRYRLGLSDLQAVGQNRHRFTPYQIVMEGGAQVS 579

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
             +  A  +    +       +     L +  + H L  +        +       +   +
Sbjct: 580  TEAQARLEKLRGILTELKDNAPFATPLVLARLAHRLLDLDIEQQLPGSSCQAGTYVEFLN 639

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              +                L     EE                  I  +A + ++     
Sbjct: 640  LVRDFGRTPGATLSGFLNWLSAGEDEEASFADLDFEVDNA-AVQIITMHAAKGLEWDWVA 698

Query: 613  IDGETVKPKIEKSSTLFIL-GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            +              +++    +    L  D   L  L        TA      +    +
Sbjct: 699  VPNLNKSTFPSVRGEIWVTQRDVLPYPLRSDRDHLPELELKTQTLLTATGRVSKKKGLLE 758

Query: 672  LNLKTAEKY--IGQAAHDFEMANGTRHLIY---TRSLRENNIPTIASRWLQ--------- 717
               + AE Y    ++   +      +  +        R+       S++           
Sbjct: 759  TFKEDAEHYALREESRLAYVAFTRAKSRLLLGHCWFERQTKKGRPPSQFFLVEQDPQQHI 818

Query: 718  -----RLLVLGGTDFFDNLKKR-------------GQCYLDWTRKLDYTTKQPHYKRPKP 759
                  L   GG +   +                     L       +  +        P
Sbjct: 819  FSDADSLASSGGANIIQSDSSTVSVVESSEGGAVGAANLLTPFNAETFAQEVARLGIETP 878

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYA---VYARRILKLDF--IPHFKKDPDRTDRGTLF-- 812
                     T    +I+    D +      A  +++         +      D G     
Sbjct: 879  DVDWPDTIVTSIPDKIENPNQDRFDAGIWPALPLIQTRPDFAQAVQATEAALDSGKFSGG 938

Query: 813  ----------HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII------- 855
                        +   L + +    T ++   +     +H  +++    +  +       
Sbjct: 939  ISQDADEEAERRLSQLLHQPQTRLGTGDLLGRISATGMAHLAQDSEGYLLQRLRPLPQQP 998

Query: 856  -WRHLFHKISHSFLEHEEKI----------QSSIEKIFVN-------------------- 884
                      H+++  + +           +                             
Sbjct: 999  SVAARLGTYMHAWIASQLENEDTFIFDVGTEDGFTPEQRELLHKWQQRYEDLELLRRLRG 1058

Query: 885  --IPAKMAI---ESIGIHLTGFADR-IDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
              +     +   E+ G  +    D   +  ++G + I D+KTG  P  E   + +  QL 
Sbjct: 1059 PQVEFDGELYLEEAGGAVIPLRIDAQFEEAQTGKIWIIDWKTGRRPTPENYAQWLH-QLG 1117

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
            +           +     +    YI L +      +   +       ++E
Sbjct: 1118 IYRL-YWLQEHPETPAEDIICA-YIFLNEDNPAKQLLTLQDILDELGIAE 1165


>gi|226952361|ref|ZP_03822825.1| ATP-dependent DNA helicase [Acinetobacter sp. ATCC 27244]
 gi|294649622|ref|ZP_06727039.1| ATP-dependent DNA helicase [Acinetobacter haemolyticus ATCC 19194]
 gi|226836813|gb|EEH69196.1| ATP-dependent DNA helicase [Acinetobacter sp. ATCC 27244]
 gi|292824499|gb|EFF83285.1| ATP-dependent DNA helicase [Acinetobacter haemolyticus ATCC 19194]
          Length = 679

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 88/723 (12%), Positives = 191/723 (26%), Gaps = 122/723 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +T    T +A +E++    ++  ++      + +           +L    NL      
Sbjct: 53  RITAMTFTNKAAREMKERVGKLLSREEAKGLSVSTFHTFGLNLLRLELK---NLP----- 104

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                    L   +     D  K +  +      +S A +  L   +A  +  I      
Sbjct: 105 ---------LKANFSILDADDCKRILMDLMQRDNMSGAESKEL---IAKAMKKIS----D 148

Query: 166 WEDLHALKNEKYGMWWLLAAD--FLKIASKYWTERLVELNASSPVGY-----QIALMRAE 218
           W++   L   +         +   L    + +   L   NA           ++    AE
Sbjct: 149 WKN--DLILPEQAHSTCETVEDVQLAHLYQLYERNLRAYNAVDFDDLIVMPTRLLQENAE 206

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +  A   L+  +             D       W     ++
Sbjct: 207 VRDKWQNRVRYLLVDEYQDTNTAQYTLVKLLVGVMG--QFTAVGDDDQSIYAWRGAKPEN 264

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
             +   +     H    +                       +       S+     +   
Sbjct: 265 MALLKDDF----HNLKVIK----------------------LEQNYRSTSRILKAANAVI 298

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITAD 395
             N  I + K+ + +    ++ +I   N+ +EA  +   L      N K     A++   
Sbjct: 299 ENNPHIFDKKLWSDKGHGENIRVITCLNDDDEAERVVKDLITHKLMNGKNWKDYAILYRG 358

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              AR ++ +L +  I   +S G           + S L  I    D  A   ++  P  
Sbjct: 359 NFQARVLETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTP-- 416

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                                   K +   + L+ L L       +       Q      
Sbjct: 417 ------------------------KRAIGPVTLEKLGLFAQENTLSLLTASSDQRLSMVL 452

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            K+ A  L +      T       +         + +         +        K    
Sbjct: 453 PKKAATQLHEFADFIATFTRELLDDDEPVPKVRQMINEAGYIDYVREQAATPAQEKTKID 512

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             E    ++ +L ++  +       + I  + ++  L   +    + E +  + +L    
Sbjct: 513 NIESLYTSIQNLINRTDDVDEKNIESVIRKLVLLDMLEQQQ----EEEDTDKVNLLTLHA 568

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + + GL E + P   +                 +E    +    +      R
Sbjct: 569 AKGLEFPYVYMIGLEEELLPHKNSI---------------ASETIEEERRLMYVGITRAR 613

Query: 696 H-LIYTRSLRENNI----PTIASRWLQRLLVLGGTDFFD--------NLKKRGQCYLDWT 742
             L  T + +  N         SR+L  L                  + K++ Q YL   
Sbjct: 614 QGLTLTLAEQRKNGGQMRQMTPSRFLDELPQDDLEWHGRKKKLAPNVDPKEQAQQYLANL 673

Query: 743 RKL 745
           + L
Sbjct: 674 KAL 676


>gi|257372988|ref|YP_003175762.1| exonuclease V subunit beta [Halomicrobium mukohataei DSM 12286]
 gi|257167712|gb|ACV49404.1| ATP-dependent exoDNAse (exonuclease V) beta subunit-like protein
            (contains helicase and exonuclease domains)
            [Halomicrobium mukohataei DSM 12286]
          Length = 1142

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 119/972 (12%), Positives = 232/972 (23%), Gaps = 103/972 (10%)

Query: 60   LRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIW 119
            LR   ++    + ++      L +   ++  +D   +         +  LLE AR     
Sbjct: 151  LREAALDALRGRESLTARFDRLDEAYGDETASDGRGADG-----RTLDTLLETARSAKRA 205

Query: 120  RNKLPDIIKD--LYPESPLSLPISPANAIWLAKNLADIIDI-----IETEEKKWEDLHAL 172
            R    +  +D  L           PA    + +++A   D                + A 
Sbjct: 206  RRLSDEQFRDRLLGAIDEAFPDGRPATFDAVVRDVARFFDEETAAAFRRRHDDEAAVTAQ 265

Query: 173  KNEKYGMWWLLAADFLKIASKY---WTERLVELNAS-------------SPVGYQIALMR 216
                +  W     +F  +   Y   +  R  E                    G      R
Sbjct: 266  SRACFDRWRARVEEFCSLVVAYETEYDRRCRERGVLAHQDVAYWVADFFDESGDADDSFR 325

Query: 217  AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                         ++I  +     A    ++ +   P+ A VL   D       W     
Sbjct: 326  ERVRQRHAHALQTLVIDEAQDVSVAQHDALAPL--VPDDARVLLAGDTDQCIYAWRDARP 383

Query: 277  KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
                      TY            +  D  R    R    +        V +        
Sbjct: 384  ALFTRAFDEGTYFG----RSWTPHERADAARTYRMRPDVSAAVDAVFETVFTDPARGAVH 439

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADN--------EREEAISIAIALRMSLDENK-- 386
                    +E       +    VA   A          E  EA  ++  L  +L ++   
Sbjct: 440  RTGDGYAPVETDREATSEPAVHVASYRARGSPGTTTWFEESEAAPLSNYLHGALADDGFA 499

Query: 387  -----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                     ++   R   R +   L   G+++   A   L  T    ++  ++  +    
Sbjct: 500  GRDADGPVEVLFPTRTNMRSLAARLEAKGLSVA-DASELLFETPLVELVVGVVEWLVDPF 558

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR--------GNKNSYDIMDLKSLVL 493
            D      L    +      +    R   A     L           +    + DL  L  
Sbjct: 559  DPERTRALFDGAVPAVTCDDGSTVREIAAAADYRLDEIGADDRLPARVETFLDDLAELRG 618

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                   +   +       +          VD   +C+  L T      S  G    S  
Sbjct: 619  RLARRTADPGALVVATVVETLALGTDPFDQVDDPRRCLAVLDTLVETVESWEGTDRYS-L 677

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            ++L     +      H  L  +  + +   +       I      +A+ +   D+   L 
Sbjct: 678  SELAGVLQRYRASPSHGPLVPVPDDSDYDVVFR----TIHNAKGDEADIVCLADLSRPLG 733

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                 +           L    +              E V     A N ++         
Sbjct: 734  VHGPHRDSFVARGETLALAPPATAPSVPVDEPSAHGVESVPRLRWATNRWVGDEQPRLGG 793

Query: 674  LK-----TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS---------RWLQRL 719
                    A     +    +      R  +     R+                 R L   
Sbjct: 794  PPVFSELAAAHRADRWRTLYVAMTRARDHLVLSVPRDATSHGTPPQDSWVTTIRRALALP 853

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
              L        L++    Y      LD        +  +P P     P         + +
Sbjct: 854  DSLERGRIDTALQRPTGEYPLAIGCLDVAYDASVSQSSRPTPRTALAPSPTRTGRTPRFV 913

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDR-------------------GTLFHNIITELI 820
            N          L   ++ H K  P  +DR                   GT+ H+++T  +
Sbjct: 914  NGSTLYPLATGLDEHWLAHLKGAPLHSDRPAPDDGLPLAFDAVGPDDLGTIAHDVLTTAV 973

Query: 821  -KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH---LFHKISHSFLEHEEKIQS 876
             +        +    +   +D+  +++          +    +   +   F       + 
Sbjct: 974  DRGVSTATLEDCAEPLAGRLDAAIDEQCRDVGGRERQQVASYVRETVCPQFASTGVWERL 1033

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGF--ADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
                ++V  P    +      +     AD +     G   + D K        T  +   
Sbjct: 1034 QSSAVYVEEPLDAVLPVADHTIETRNHADIVSRAPDGTWYVDDIKLVLADTDATRDR-YA 1092

Query: 935  PQLSLEAAALKA 946
             Q +  A  L+ 
Sbjct: 1093 LQTAFYAWLLER 1104


>gi|326435120|gb|EGD80690.1| DNA and RNA helicase [Salpingoeca sp. ATCC 50818]
          Length = 1191

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 83/743 (11%), Positives = 184/743 (24%), Gaps = 117/743 (15%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
           V +   T +A  E+R+    + G++      + +   +  +           L    + I
Sbjct: 163 VVLVTFTNKAANEMRTRVETLVGREKAAALHMGTFHSIANKFLRKHA-AKVGLPSNYTII 221

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
            +             KL    KD      L  P +    I  AKNL           K  
Sbjct: 222 DQSDA-----QRVVEKLMKSHKDARQFETLK-PRTLLGWISWAKNL----------GKTP 265

Query: 167 EDLHALKNEKYGMWWLLA-ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
           ++L+ +             A FL+   ++    L            I   +   +H    
Sbjct: 266 KELNTMAQSAPFPDSSKTTATFLQPYQRH----LQNHGFVDFDDLLIKFNQLLEDHPHVT 321

Query: 226 TK-GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                I+I     +      + + +A + N  +V    D +     W             
Sbjct: 322 RFCQHILIDEFQDTNVVQYSIATKLAANANITVV---GDPNQSIYSWRQAQADGYRKFKR 378

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
           +                                 ++ G       +      S +     
Sbjct: 379 DFAG-----------------------------CQVVGLGRNYRSTEAIVQLSSLCLASQ 409

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-----DENKKKSALITADRNLA 399
            + K          V     ++   EA SIA      L            A++     + 
Sbjct: 410 RDTKFWTSNGGGPPVVFATYNSPMHEARSIAKETARVLQSAKGAITFSNIAVLVRTNAMT 469

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           R ++   T  GI   I  G+            + L  +  L+D +++A ++  P    G 
Sbjct: 470 RSLEQAFTHVGIPYVIVGGLKFFDRAEVRDCMAYLKLVHNLHDDISLARIINTPKRGAGP 529

Query: 460 PEKYLSRA-KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                  A                          +      +          R  ++   
Sbjct: 530 KLMEALEANALRNHCSLWDALTKGLQAKRGAPDRIKCPRPTRAALGSLVALIRKHQQGDH 589

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCG--NLSISDWTKLTVTCLQ-------------- 562
            A  ++  IL+ +      ++   +T      ++ +   LT                   
Sbjct: 590 SATHVLLDILKQVQYKEHLESTDKATAASKWENVQELLALTREFEHESHSGNPNDGGDGA 649

Query: 563 --------------------NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                                    E   L     + +     +      +       + 
Sbjct: 650 GAGGGDGDDDDGVKAEEEEEQQQRGEDDNLKQQQQQRDDDASDTDDDDDDDDDDDDDDDG 709

Query: 603 IE-----WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                  +I+ ++     + ++    +   + +     ++   +  + + G+ +GV P +
Sbjct: 710 DMSKLSSFIEHVSLYASSDKLERNQSRQDCVTLSTIHSAKGREWAVVFVPGVEDGVLPHS 769

Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRENNI-----PTI 711
            A +    +   S L          +    +      + +L  +R L             
Sbjct: 770 HALDEVQKKGDSSRLK--------EERRLLYVALTRAKYYLHMSRCLWRGGAYGYSSENE 821

Query: 712 ASRWL-QRLLVLGGTDFFDNLKK 733
            SR++ +R+  L      D    
Sbjct: 822 VSRFISKRMFELVKPSVSDRTLA 844


>gi|317508165|ref|ZP_07965848.1| hypothetical protein HMPREF9336_02220 [Segniliparus rugosus ATCC
            BAA-974]
 gi|316253576|gb|EFV12963.1| hypothetical protein HMPREF9336_02220 [Segniliparus rugosus ATCC
            BAA-974]
          Length = 265

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 80/293 (27%), Gaps = 63/293 (21%)

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
             A  RT S S+ K     PY+ Y  R+ K    P          +G+  H       +  
Sbjct: 3    HAAKRTLSVSQYKTYERCPYSWYLSRVEKAWQRPAAWLP-----QGSAVHEAAEAYERSG 57

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR------------HLFH-------KIS 864
                  +   + ++    H  +          W               F        +  
Sbjct: 58   RTLTLDQAQDVYRESYARHVGEYCEITPNFNWWFRSGSYGGKEDLERRFKLGLEQVGRYL 117

Query: 865  HSFLEHEEK---IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG---FVDITDY 918
              +  H  +   I        + +   + ++  G+ + GF D +  + +G    V + D 
Sbjct: 118  DYYETHPAEVIWIAPDGTP-GIELEFNIDLD--GVAVRGFIDAV--IPNGCGDEVLVRDN 172

Query: 919  KTGDNPKKETAQKLIDPQLSLEAAALKA--GSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
            KTG++P         D QL     AL    G F+ +         Y   +          
Sbjct: 173  KTGNSP-------GDDFQLGTYGVALSEQFGVFAPVGD-------YWMGRTGKPTKAYDI 218

Query: 977  DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE----KSNIQSEYD 1025
             K         E+  +    +   ++     F      S+          +Y 
Sbjct: 219  SKWT------VERVTEEFHRLADNIEAER--FDPDPEPSKCMFCDVAYSCDYA 263


>gi|315655665|ref|ZP_07908563.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 51333]
 gi|315489729|gb|EFU79356.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 51333]
          Length = 877

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 88/698 (12%), Positives = 185/698 (26%), Gaps = 107/698 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T +A  E+R     + G  +  +  + +          A+             
Sbjct: 111 EVLAITFTNKAAAEMRQRVESLVGNAAKYM-WVSTFHSACVRILRAEADTL--------G 161

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           + R   +          L + I       P   P          K+ A  I   + E   
Sbjct: 162 VTRSFSIYD--TADTKALLNRIIKGRGLDPKRFPP---------KSFAAKISQAKNELIT 210

Query: 166 WEDLH-ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEA 219
            E        +K                  + + L   NA        + +       + 
Sbjct: 211 PEVFAVGAGVDKMS-------QLTAEIYTEYQQLLRRANAFDFDDLIASTVYLWKAHPDI 263

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMS-----TVANHPNGAIVLPGLDCHIPTAIWNTI 274
               +     +++     + PA   L+         +    A +    D       +   
Sbjct: 264 LARYRAKFRHVLVDEYQDTNPAQYELIRLLTVGATGDAQPPAELTVVGDSDQSIYAFRGA 323

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
           T ++     S+   +T           +L+        + +V+N +   +    K  L  
Sbjct: 324 TIRNIEEFESDFPGAT---------TVYLEQNYRSTGTILSVANAIISENEGRRKKNLWT 374

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALI 392
           D                         L  AD +R+EA  I   L+    E  +  + A+ 
Sbjct: 375 DAGQGMQAV-----------------LYAADTDRDEAAFIVRELQKLRQEGSSWDEFAVF 417

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R ++  LTR GI   +  G             + L A     D   +  ++  
Sbjct: 418 YRTNAQSRSLEEMLTREGIPYRVVGGTKFYDRREIKDAIAYLCAAANPADDGNLLRVLNE 477

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P    G       R  +  E +             L+  +         +      ++  
Sbjct: 478 PKRGLGDKAVQTIREVSLSENLDF--------GQALRQFL-----PGGTHHGDLSAKASA 524

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
              +    +  +  +     PL           G L                       L
Sbjct: 525 GITEFVGVLDAMRALDAAGAPLDEILDTALEDSGYLP------KLRKSNDPQDDARVENL 578

Query: 573 PNLWFEEEGKTLSSLFSKIIETGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
             L    +  +LS   +++ +      + A+A +  D   +                + +
Sbjct: 579 AELRNVAQDFSLSEPDARLADFLERISLVADADQLPDTAGQPERPADPVHPAAP-PEVTL 637

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L F+T+ + G+ +G++P + +              L++ +    +    +  
Sbjct: 638 MTVHTAKGLEFNTVFVTGMEDGLFPHSRS--------------LESPQDIAEERRLAYVA 683

Query: 691 ANGTR-HLIYTR-SLRENNIPTI---ASRWLQRLLVLG 723
               R  L  TR + R     T+   ASR+L  +    
Sbjct: 684 VTRARQRLYLTRCAARTVFGETVTMPASRFLDDIPAEL 721


>gi|309811913|ref|ZP_07705685.1| ATP-dependent DNA helicase PcrA [Dermacoccus sp. Ellin185]
 gi|308434125|gb|EFP57985.1| ATP-dependent DNA helicase PcrA [Dermacoccus sp. Ellin185]
          Length = 897

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 76/729 (10%), Positives = 185/729 (25%), Gaps = 90/729 (12%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +          P     +     T +A  E+R    ++ G  +  +  + +    
Sbjct: 136 VLTHRIAYLMAARGAQP---GQILAITFTNKAAAEMRERVEQLVGGAANAM-WVSTFHSA 191

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                  +             ++    +         +L  ++       P   P    +
Sbjct: 192 CVRILRREAKHV--------GLRSTFSIYD--AADSQRLMAMVTRDLDLDPKRYPPKSFS 241

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                      +  ++ E    E+                   +  A + + +RL + NA
Sbjct: 242 FQ---------VSNLKNELIDAEEAAKRAETDQ-------ERKVAEAYRLYQQRLRQANA 285

Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  +  +             +     I++     +  A   L+  +A    G    
Sbjct: 286 LDFDDIIMTTVTILQAFPQVAEHYRRRFRHILVDEYQDTNHAQYVLVRELA----GGEHA 341

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
            G          +  T             +    Y+         ++ E+       +  
Sbjct: 342 SGGMASQDAEGDSRATSAVPMADLCVVGDADQSIYAFRGATIRNIVEFEEDYPN-ATTIL 400

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
           +              ++   RN +  +  + + Q     +    AD+E +EA  +A  + 
Sbjct: 401 LEQNYRSTQNILGAANSVIERNPERRKKNLWSDQGDGEKIVGYVADSEHDEAAFVARTID 460

Query: 380 MSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
              D++    K  A+       +R ++    R G+   +  G             + L  
Sbjct: 461 KLGDDHGVKPKDVAVFYRTNAQSRALEEVFVRVGLPYKVVGGTRFYERKEIKDALAYLRV 520

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           I    D + +  ++  P    G   +    A    E +       +    D    +  R 
Sbjct: 521 ISNPADTVNLRRILNTPKRGIGDRAEACLGALAERERITF---IEALARADEAPGIATRS 577

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT--NKNSTCGNLSISDWT 554
            +            R + E       L++ IL+    L   +T  +        ++++  
Sbjct: 578 VSAVKGFTEILESLRQTRESGSGVGPLIEAILERTGYLKELRTSKDPQDETRIENLAELV 637

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            +      N                                    A   ++++ ++ + D
Sbjct: 638 AVANEFDDNY---------------------------------PGATLEDFLEQVSLVAD 664

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
            + +    E    + ++    ++ L F  + L G+ +G +P   A         +  L  
Sbjct: 665 ADEIPKDAEDQGVVTLMTLHTAKGLEFPVVFLTGMEDGTFPHMRALGDTKELEEERRLAY 724

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
               +   +       A         RS          SR+L  +         +     
Sbjct: 725 VGITR--ARERLHLSRAA-------VRSAWGAPQYNPPSRFLGEIPEEFVHWEREATAFA 775

Query: 735 GQCYLDWTR 743
                 +  
Sbjct: 776 SSQPRGYAA 784


>gi|298345279|ref|YP_003717966.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
 gi|298235340|gb|ADI66472.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
          Length = 1191

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 99/1130 (8%), Positives = 249/1130 (22%), Gaps = 185/1130 (16%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
            +   LV       + P     +     T++A  E+ + F     + +++L  ++      
Sbjct: 54   IANRLVYWVVNAGIVPEA---ILGLTFTRKAAAEMAARFSLRLDRFASLLESVQERRQTA 110

Query: 86   E--EKFTADLLLSYNLNPPVSNIQRLLELARL---------ILIWRNKLPDIIKDLYPES 134
            E      A       L      + +      +            +   L      L    
Sbjct: 111  EVTAVLKAADFDLNQLRQRFDTLVQRGMTPEMLRHPVSVSTYDSYAGTLLTEFGTLVGRE 170

Query: 135  PLSLPISPANAIW------------------------LAKNLADIIDIIETEEKKWEDL- 169
                 I+ A                            L   L  + +   +      ++ 
Sbjct: 171  SGFTTITDAARYQIMTDVVQSWTGALGTKREGENAENLVNILLSLANDTNSHLVDLAEMK 230

Query: 170  ----------HALKNEKYGMWWLLAADFLKIA-------------SKYWTERLVELNASS 206
                        L++ +       A   L                 + + ER  EL  + 
Sbjct: 231  QTYRSYHAAARRLQDTEGADLNSTALRNLDTIIDTMEFGCNATNIIQAFNERKRELLMAD 290

Query: 207  PVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                    +R   +        +     + +     +  A  R ++ +        V   
Sbjct: 291  FSDQTRETVRLVEQLPAVGESQRERFQLVFLDEFQDTSVAQMRFLAGIFRDCA---VTAV 347

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD-------IKREDVKRLG 314
             D +     W   +  S     S     +H Q     L            +       L 
Sbjct: 348  GDPNQAIYGWRGASAASMEDFGSIFCTDSH-QLLTRTLSTSWRNDAVILAVSNRISAELT 406

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN---EREEA 371
                    R++ +++      +  ++        I    +  +D+   +A        +A
Sbjct: 407  GAPAVAAERNIPLNQDVQSAISKPLQARSGANPGIVYGIQTLTDLQQSQAVVNFFRLWQA 466

Query: 372  ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
              + +       E    +A++   +N    +   L + GI         +       ++ 
Sbjct: 467  QRVKLQGEGVPAEKLPTAAVLCRAKNAIPGLVESLRQAGIPYQTRGMQGILEDPGVRLVR 526

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            + L          ++  L+          +              +              L
Sbjct: 527  AALEITDNPEKSASLLLLLDRYRLGLSDLQAVGRNRHRFTPYQIVMEGGAQVSTEAQARL 586

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
               R    +   + P     +        + L        +        +          
Sbjct: 587  EKLRGILTELKDNAPFATPLVLARLAHRLLDLDIEQQLPGSSCQAGAYVEFLNLVRDFGR 646

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                     L  +   E  +      + E    +      +     ++ + +   ++   
Sbjct: 647  TPGATLSGFLNWLSAGEDEEASFADLDFEVDNAAVQII-TMHAAKGLEWDWVAVPNL--- 702

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
                        +         +    L  D   L  L        TA      +    +
Sbjct: 703  ----NKSTFPSVRGEIWVTQRDVLPYPLRSDRDHLPELELKTQTLLTATGRVSKKKGLLE 758

Query: 672  LNLKTAEKY--IGQAAHDFEMANGTRHLIY---TRSLRENNIPTIASRWLQ--------- 717
               + AE Y    ++   +      +  +        R+       S++           
Sbjct: 759  TFKEDAEHYALREESRLAYVAFTRAKSRLLLGHCWFERQTKKGRPPSQFFLVEQDPQQHI 818

Query: 718  -----RLLVLGGTDFFDNLKKR-------------GQCYLDWTRKLDYTTKQPHYKRPKP 759
                  L   GG +   +                     L       +  +        P
Sbjct: 819  FSDADSLASSGGANIIQSDSSTVSVVESSEGGAVGAANLLTPFNAETFAQEVARLGIETP 878

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYA---VYARRILKLDF--IPHFKKDPDRTDRGTLF-- 812
                     T    +I+    D +      A  +++         +      D G     
Sbjct: 879  DVDWPDTIVTSIPDKIENPNQDRFDAGIWPALPLIQTRPDFAQAVQATEAALDSGKFSGG 938

Query: 813  ----------HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII------- 855
                        +   L + +    T ++   +     +H  +++    +  +       
Sbjct: 939  ISQDADEEAERRLSQLLHQPQTRLGTGDLLGRISATGMAHLAQDSEGYLLQRLRPLPQQP 998

Query: 856  -WRHLFHKISHSFLEHEEKI----------QSSIEKIFVN-------------------- 884
                      H+++  + +           +                             
Sbjct: 999  SVAARLGTYMHAWIASQLENEDTFIFDAGTEDGFTPEQRELLHKWQQRYEDLELLRRLRG 1058

Query: 885  --IPAKMAI---ESIGIHLTGFADR-IDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
              +     +   E+ G  +    D   +  ++G + I D+KTG  P  E   + +  QL 
Sbjct: 1059 PQVEFDGELYLEEAGGAVIPLRIDAQFEEAQTGKIWIIDWKTGRRPTPENYAQWLH-QLG 1117

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
            +           +     +    YI L +      +   +       ++E
Sbjct: 1118 IYRL-YWLQEHPETPAEDIICA-YIFLNEDNPAKQLLTLQDILDELGIAE 1165


>gi|183980979|ref|YP_001849270.1| exodeoxyribonuclease V (gamma chain), RecC [Mycobacterium marinum
           M]
 gi|183174305|gb|ACC39415.1| exodeoxyribonuclease V (gamma chain), RecC [Mycobacterium marinum
           M]
          Length = 1099

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 81/861 (9%), Positives = 201/861 (23%), Gaps = 67/861 (7%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              A   + VP +   + L      + G        + +       +     +     + 
Sbjct: 28  DPFAEELVLVPARGVERWLSQRLSHLLGHAPGGGDGVCAGVSFRNPRSLIAEITGTAADD 87

Query: 102 PVSNIQRLLELARLILI-----WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156
           P S       L  +I       W   L   +          L         +A+ LA + 
Sbjct: 88  PWSAEAMTWPLLEVIDGSLEQPWCATLARHLGHFDVGPEAELRRG--RRYSVARRLAGLF 145

Query: 157 DIIETEEKK-WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
                +  +   D                   L    + W   +  + A  P       +
Sbjct: 146 ASYARQRPRVLSDWLDGGRGDLDPD-------LSWQPELWCALVAVVGADPPHLRHEKTL 198

Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
            A            + + G T        L+  VA H    + LP        A+W ++ 
Sbjct: 199 TALRARPAGLPP-RLSLFGHTRMAVTDIELLGAVATHHELHLWLPHP----SAALWRSLA 253

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
           +   +        ++H +     L       RE  + L                  L   
Sbjct: 254 D--LHGVVPRRADASHRRVVHPLLATLGRDLRELQRGLPADPATDEALGATTRPDTLLGW 311

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSAL 391
                  + +  +   +      + +        +   +   L   L ++     +   +
Sbjct: 312 LQSDLAANQVRPENRTLVAGDRSIQVHSCHGPARQIDVLREVLLGLLADDPTLEPRDILV 371

Query: 392 ITADRNLARRVKLEL-----------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
           +  D      + +                 + + ++    L T     + + LL      
Sbjct: 372 MCPDIETYAPLIVADFGLGDVMHGVHPAHRLRVRLADRSLLQTNPLLGVASQLLMLAGSR 431

Query: 441 NDFMAIATLVKHPLAKFGF----------PEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
                +  L +    +  F                           R       + +   
Sbjct: 432 VTASEVLNLAQAAPVRARFGFADDHLEDITRWVRQSNIRWGFDQEHRKPYGVDFVHNTWR 491

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
             +DR+      +   H     +    ++    V+   +    +   +   +S  G   +
Sbjct: 492 FGIDRVLAGVAMSEASHAWIDATLPLDDVGSNRVELAGRFAEYIDRLRQVVDSLTGTRPL 551

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
            +W       +  +   +     + W  ++ +   +  S+             +   ++ 
Sbjct: 552 REWLAALTDGIALLTRVDEG---DAWQSDQMQREFAEVSRTAGRWVETMLRLPDIRALLQ 608

Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
           R + G   +    ++ TL +   +  R +    + L GL++GV+     +       + +
Sbjct: 609 RHLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVF---PRQGVVDGDDVLA 664

Query: 671 DLNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              +        +       A G    +L+ T +             +    +L   D  
Sbjct: 665 RSPMTGERDIRSEDRQLLLDAIGAATENLVITYTGANEYSGQRKPPAVPLAELLDTLDMT 724

Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
              + RG+  ++   +                P         +                 
Sbjct: 725 TTEQVRGRVVVEHPLQPFDVRNVTCGALMPGVPFSFDPTVLRAARAAAGERAQQPRFIGA 784

Query: 789 RILKLDFIPHFKKDPDR------TDRGTLFHNIITELIKKRINKNTPEINHLMK-----Q 837
            +           D                   +   +    +    +IN L +     +
Sbjct: 785 PLAPPPADDVALADLVAFFKDPVKGFFRALDYTLPWDVDGVEDAMPVDINALEEWTVGDR 844

Query: 838 IIDSHFEKENLPPHIDIIWRH 858
           ++                WR 
Sbjct: 845 MLADILSGMAPDEARQAEWRR 865


>gi|254383079|ref|ZP_04998433.1| ATP-dependent DNA helicase II [Streptomyces sp. Mg1]
 gi|194341978|gb|EDX22944.1| ATP-dependent DNA helicase II [Streptomyces sp. Mg1]
          Length = 847

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/689 (8%), Positives = 171/689 (24%), Gaps = 90/689 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R     + G ++  +  + +           +            
Sbjct: 114 GQILAITFTNKAAGEMRERVEGLVGPRANAM-WVSTFHSACVRILRRESKRLG------- 165

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                         +        K L       + + P      A N    I  ++ E  
Sbjct: 166 ----------FTSSFSIYDAADSKRLMALVCRDMDLDPKKFPPKAFN--AKISNLKNELI 213

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             E   A   + +               +        L+    +   + L++A  +    
Sbjct: 214 DDEAFAAQAVDGF----EKTLAQAYALYQGRLREANALDFDDIIMTTVHLLQAFPDVAEH 269

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANHP----NGAIVLPGLDCHIPTAIWNTITEKS 278
            +     +++     +  A   L+  +          A +    D       +   T ++
Sbjct: 270 YRRRFRHVLVDEYQDTNHAQYTLVRELVGTGYPDLPPAELCVVGDADQSIYAFRGATIRN 329

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +   +T            L+      + + + +N +  R+       L  +   
Sbjct: 330 ILQFEEDYKDATTIL---------LEQNYRSTQTILSAANAVIERNENRRAKNLWTEAGS 380

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITAD 395
                               +    AD E +EA  +A     L  + D      A+    
Sbjct: 381 GAV-----------------ITGYVADTEHDEAQFVADEIDRLTDADDAKAGDVAIFYRT 423

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-L 454
              +R  +    R G+   +  G+          + + L  +    D + +  ++  P  
Sbjct: 424 NAQSRVFEEIFIRVGLPYKVVGGVRFYERKEVRDVLAYLRVLANPEDNVPLRRILNVPKR 483

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                 E  +       ++   +  +   +   + +   + +                  
Sbjct: 484 GIGERAEAMIDALAMREKITFPQALRRVDEAFGMAARSTNAVKRFNVLMEELRTIVDSGA 543

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
               +   +++         +   T+        ++ +   + +   Q            
Sbjct: 544 GPAVVLEAVLERTGYLAE--LQASTDPQDETRIENLQELAAVALEFEQARATAAAE---- 597

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL-FILGT 633
                         +              E+++ +  + D + +  +  + + +  ++  
Sbjct: 598 --------------AAENGAPPVGPGTLSEFLEQVALVADSDQIPDEDTEGTGVITLMTL 643

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + L G+ +GV+P   +         +  L      +   +          
Sbjct: 644 HTAKGLEFPVVFLTGMEDGVFPHMRSLGQTKELEEERRLAYVGITRARERLYLTRSSM-- 701

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVL 722
                  RS          SR+L+ +   
Sbjct: 702 -------RSAWGTPSYNPPSRFLEEIPAE 723


>gi|331016621|gb|EGH96677.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 1104

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 85/841 (10%), Positives = 195/841 (23%), Gaps = 107/841 (12%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVE 86
           TLV   ++     +  + + +   T +A  EL           +         + G    
Sbjct: 224 TLVHRIKHLIEQGVTPSKILVLTFTNKAAHELVERMRASAIPGASDVWAGTFHAFG---- 279

Query: 87  EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
            +F       + L   V    RL ++ +++ +             P   L   +   +  
Sbjct: 280 LEFLRKYHDLFQLKADVGMADRLTKVRQMVRLL------------PTISLQYYVRLQDPY 327

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYG--MWWLLAADFLKIASKYWTERLVELNA 204
                + D +D ++ E     D  A                  + +  + +   L     
Sbjct: 328 EWLPKVLDYVDRLKEELVSVTDYRARLAALPAPTPDVAQQQADIAVVYEAYEAELRAKQL 387

Query: 205 SSPVGYQIA-LMRAEAEHLMKGTK----GPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                      ++A  +             I++             +  +A +     V 
Sbjct: 388 VDYTDLVALPTLQARKDRASVSQYIDHFDHILVDEYQDVTHVMVEFIRELAVNAKS--VW 445

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       W   + +S     S                      R +       +  
Sbjct: 446 VVGDVRQAIHHWRGASIQSLMKFDSAF--------------------RRNAPHASVATYN 485

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA----LIEADNEREEAISIA 375
           +        +       +   +   +   +  +    + +     L E  +   +A ++A
Sbjct: 486 LDINRRSTPEILKLFSHTGRDHKLQIRLPLQPVNAHRASIDANPILFECTSIDSQAQTLA 545

Query: 376 IAL--RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
             +    ++  N +   +I+       R   +L+  GI         +        L  L
Sbjct: 546 NVIGKLSTMGVNYRDQVIISRSTANIERTAEDLSARGIPYLYIGD--VHQRTEIKRLICL 603

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           +  +       ++  L+  P       +  L     +                 L   V 
Sbjct: 604 MQLLCTR-QPRSLVGLLHEPNLALSIADMKLLMDSTSPGTGVGLQRGKWIGTQGLGLSVA 662

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
             IA  +    +  +    +  D  +  LL+D       P  T                 
Sbjct: 663 GEIARVELAKLLAGFDRHTNPWDF-VCTLLLDRRFGLPNPADTSMNAHTERLALWLF--- 718

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                                         + +      E          +    I   +
Sbjct: 719 ---------------------------VYAVRNNDGNTKEARLSPFLLREDLRRRINEKL 751

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               V P+    + + ++    S+ L F+ + +  +++  +    A +       +S L 
Sbjct: 752 ADRGVPPEARALNAITLMTVHGSKGLEFNAVHVTDVDKAAYGAEQAWD----YDPRSTLL 807

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
           +        QA H+F+ A    +L+Y    R  +       +L                 
Sbjct: 808 IPPEVLNSTQAEHNFKEAVERNNLLYVALSRARDR-----LFLYETNPKDRPSSLSRAGS 862

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
             + Y             P      P                +  I+ P   + R  L L
Sbjct: 863 LLERYSGAVPLPPVVPPAPVAASTAPLVVNYG--------AFESYISCPLHYHYRYELDL 914

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                                 +   +K    +   E       +     +K      + 
Sbjct: 915 TAEQDIDVSIRARW---AVMEALQATLKGATAQTAFETAWASHDLPAYTLDKALYSDAVK 971

Query: 854 I 854
            
Sbjct: 972 A 972


>gi|217970263|ref|YP_002355497.1| exodeoxyribonuclease V, subunit gamma [Thauera sp. MZ1T]
 gi|217507590|gb|ACK54601.1| exodeoxyribonuclease V, gamma subunit [Thauera sp. MZ1T]
          Length = 1218

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 102/985 (10%), Positives = 231/985 (23%), Gaps = 135/985 (13%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+       PL P  L S  I V +    + ++       G  +     + +      +
Sbjct: 31  DTVAGWLAQHPLAP--LESEVILVQSNGMAEWVKMAIARRAGVCAAAAVQLPA----RFQ 84

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
             T   +L     P  S + +     RL+ +    L +      P +       P     
Sbjct: 85  WQTYRQVLGRAQVPARSPLDKTALAWRLMRLLPEVLAE--PGFAPVAGYLADNDPGRRFQ 142

Query: 148 LAKNLADIIDIIETEEKKW--------EDLHALKNEK----------------------- 176
           LA  +AD+ D  +     W        E L      +                       
Sbjct: 143 LALRIADLYDQYQVHRPDWLDAWGEGREALPDAGRGETPLTGRGETPLAGRGETPLPEDQ 202

Query: 177 --YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234
                 W    D L    +  T   +            A+    A H        +++ G
Sbjct: 203 RWQARLWQRVVDELDPQQRALTRPQLHDRVL---AALDAIAEDAALHPAAALPRRVVLFG 259

Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT---------EKSTNITSSN 285
            T     T +L++ ++ H    + +P         I +                     +
Sbjct: 260 MTHVPLPTLQLLAALSRHAQVLLAIPNPCRFHWADILDGREWLRIARRRQPLRDGRELQD 319

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL------------- 332
                   ++   L  +    R+ V++L    +    R+                     
Sbjct: 320 VGLDAMHLHAHPLLAAWGRQARDFVRQLDAFDDAEQTRARFPLARIDLFDDDQDTHDVAQ 379

Query: 333 -----PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN-- 385
                         T + E+  P +      +    A +   E   +   L   L     
Sbjct: 380 PTLLVQVQRHIRDLTPLAEHPHPPVPAEDRSIVFHLAHSPVRELEILHDQLLALLARPPG 439

Query: 386 -----KKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSL 433
                 +   ++    +        +           I  DI+     +++     +  L
Sbjct: 440 DKPLRPRDIVVMVPSIDDFAPAIRAVFGQYGRHDPRHIPFDIADLSARASSPLMGAVEWL 499

Query: 434 LNAIFKLNDFMAIATLVKH--------------PLAKFGFPEKYLSRAKNALELVALRGN 479
           L           +  L+                P          +    +A     L   
Sbjct: 500 LRIRHDRCRLSDLGALLDVPAIAARFGLAEEGLPRLTGWMRGAGIRWGLDARHRAGLGLQ 559

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYK 538
                   L  L    +      + V         E  +    L   +   +  L     
Sbjct: 560 ACGEQNSALFGLRRMLMGYAAGRSEVTTDAPFAGIEPYDEVGGLDAELAGALAHLVERLI 619

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
             +  +    + + WT+     L ++                   L        E     
Sbjct: 620 RWQADSRRPATPAAWTQRLRALLADLVRAVDDTDRQT-LAALDDALERWLEACDEAAFEA 678

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
           +       +     ++   +  +  ++  +     +  R + F+ + L G+N+G +P+ +
Sbjct: 679 ELPLAVAAEAWLAALESPALDKRF-RAGGVTFCTLMPMRAIPFEVVCLLGMNDGDYPRRS 737

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLR--ENNIPTIASRW 715
            ++ F    +          +         E     R +   +   R   +N     S  
Sbjct: 738 PRSDFDLMALPGQQRPGDRARRDDDRQLMLEALLSARRVLYLSWCGRNVRDNSVQPPSVL 797

Query: 716 LQRLLVLGGTDFFDNL-----------------KKRGQCYLDWTRKLDYTTKQPHYKRPK 758
           + +L       +   +                  + G   L + R+      +   +   
Sbjct: 798 VAQLRDYLAAGWSPAVVAERTVEHPLQPFSRRYFEPGTPLLTYAREWRAAHVEAAAQDDA 857

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                    R  +    +     P    A       F+P                N +  
Sbjct: 858 VPSHDGQANREATGRATR-----PTRGEAASPPLPPFVPDPAVPLTIAALAAFLRNPVKV 912

Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS------HSFLEHEE 872
             ++R+     +++  +    D  F  + L  H  +                        
Sbjct: 913 FFRERLGVVYEDVDEALPD--DEAFGFDGLEEHGLVEELAAAVLADLALLPPPELHAFAL 970

Query: 873 KIQSSIEKIFVNIPAKMAIESIGIH 897
           +     +   +    ++ I  +G+ 
Sbjct: 971 EAAVEAQLGRIERAGRLPIGGLGLR 995


>gi|261252168|ref|ZP_05944741.1| exodeoxyribonuclease V beta chain [Vibrio orientalis CIP 102891]
 gi|260935559|gb|EEX91548.1| exodeoxyribonuclease V beta chain [Vibrio orientalis CIP 102891]
          Length = 1205

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 110/918 (11%), Positives = 221/918 (24%), Gaps = 110/918 (11%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE        L A                     K W      L   S    Q  
Sbjct: 309  QVFNAIEDFLAAPISLKAPILAHAIEHCRDMLA-KAKQQKQWMSFDDLLTNLSAAIDQDE 367

Query: 214  LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
                     ++      +I     + P    + S +  +     +    D       +  
Sbjct: 368  AE--LLASRIRQLYPVAMIDEFQDTDPLQYSIFSRIYLNNPECGLFMIGDPKQAIYGFRG 425

Query: 274  ITEKS-----------TNITSSNTTYSTHPQYS---LAKLLDFLDIKREDVKRLGNVSNE 319
                +             + ++  + +          A         ++      N S  
Sbjct: 426  ADIFTYIKARNQVSSHFTLGTNWRSSADMVAAVNQVFALPSSPFIYDQDIPFHPVNHSPN 485

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
               R   I     P  T         E+K     +    +A   AD  +    S    L 
Sbjct: 486  AEKRIWTIGGQKQPALT---YWLQDAEDKPLPKGEYLQAMAKATADQIQAVLTSAQQDLA 542

Query: 380  MSLDENKK------KSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTS 432
               D   K        A++    N  R VK  L + GI  + +S    + T++ +  L  
Sbjct: 543  FFEDGKGKHQIQAGDIAVLVRTGNEGRMVKDALAKQGIASVYLSNRDSVFTSMIAQDLQR 602

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            LL A+    +  A+   +   +                        N+    I + K   
Sbjct: 603  LLQAVLTPENDRALRASLASEMFALDAGALDKL---------NNDENEWESAINEFKEYR 653

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                              R   E           +   +      +        +  +  
Sbjct: 654  KLWTQRGVLPMLRAVMSKRHIAERLLEEEGGERTLTDLMHIGELLQQASQELDSDHGLLR 713

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
            W    ++  +N       ++  L  E     +       I     ++ + +    +++  
Sbjct: 714  WLAQAISDAENGLGGSEDQIQRLESERNLVQIV-----TIHKSKGLEYDLVFLPFVLSYR 768

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVMQS 670
               E       +  T+  +   ++ L   D   L      ++   T      F+      
Sbjct: 769  EASEAKYYDAAQDRTILDITKQDASLAQADKERLAEDLRLIYVALTRAVYGCFIGAAPLR 828

Query: 671  DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
            +    T E      +    +    +    +          +      +L  L        
Sbjct: 829  N-GRSTKEPTGVHHSAMGYLLQDGKEGGISDLTMAIQKH-VDGLDAVQLCSLPPEQQQVF 886

Query: 731  LKKRGQCYLDWTRKLD-YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
             +  G+      R L     +              +     +++++  L  D        
Sbjct: 887  TQITGEPQTLTARTLSNEIDRHWRITSYSGLIKQGSHHSDEAYTDLMHLDIDSSDEQDEE 946

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             L       F         GT  H +  E+   +   +          II    E E L 
Sbjct: 947  ELVEPEQSIFTFPRGARP-GTFLHTLFEEVEFTQSASSEENT-----DIIIRLLESEQLD 1000

Query: 850  PHIDIIWRHLFHKISHSFLEH------EEKIQSSIEKIFVNIPAKMAIE----------- 892
                  W  +  ++  + L            Q    +  V +   + IE           
Sbjct: 1001 QS----WLPVLQQLIDTVLATPLDGKQLILNQKGPSQRLVEMEFLLPIEVLAAPALNRVI 1056

Query: 893  -----------SIGIH-----LTGFADRIDLLKSGFVDITDYKT-----------GDNPK 925
                        +G H     L GF D +   + G   + D+K+           G    
Sbjct: 1057 QRHDTLSAKAGDLGFHTVQGMLKGFIDLVFEHQ-GKYYVLDWKSNHLGDDVSYYHGQALN 1115

Query: 926  KETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKY 981
               A    D Q  + A AL     S+I      +    ++Y+ L+             K 
Sbjct: 1116 GAMADHRYDLQYQIYALALHRFLRSRIANYDYEQHFGGVYYLFLRGMDGASDHGVFSAKP 1175

Query: 982  SADELSEKSLKNLIEIVT 999
            S      + L ++ +++ 
Sbjct: 1176 SL-----EFLDDMDKLID 1188


>gi|126661311|ref|ZP_01732380.1| DNA helicase II [Cyanothece sp. CCY0110]
 gi|126617407|gb|EAZ88207.1| DNA helicase II [Cyanothece sp. CCY0110]
          Length = 772

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 77/724 (10%), Positives = 178/724 (24%), Gaps = 128/724 (17%)

Query: 40  NPLLLASVTIYVPTKRAIQELRSEFIEITG------------------KKSTILPIIK-- 79
           +P     +     T +A +E++     +                    ++  +L  +   
Sbjct: 54  DPES---ILAVTFTNKAAREMKDRLERLFAQEMALKQHSQPFNSLSEYEQKRLLSQVYKK 110

Query: 80  --------SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
                   +   +       D+    +        +R   +     +       ++K   
Sbjct: 111 TTKKLWIGTFHSLCARILRYDINKYQDERKR--TWERNFSIFDESDVQSLVKNIVLKQFN 168

Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
            +     P +    I  AKNL              E    LK   Y          +   
Sbjct: 169 LDDKKFNPRNVRYTISNAKNL----------GLSPEA--YLKENSYA-----KGRIIAEV 211

Query: 192 SKYWTERLVELNASSPVG------YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            + +  +L   NA                  +   +        I++     +     +L
Sbjct: 212 YEEYQNQLAANNALDFDDLILIPVRLFQQNESILGYWHS-QFKHILVDEYQDTNQIQYQL 270

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           +          ++    +       W      + +I        +   + +A     L+ 
Sbjct: 271 IQ---------LLTTNAEPQKSEWNWQ-----NRSIFVVGDADQSIYSFRMADFTILLNF 316

Query: 306 KREDVKRLGNVSNE----MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
           + +    L +        +              +     N+  ++  +   +    ++  
Sbjct: 317 QSDFGDGLPDEDTRTMVKLEENYRSTETILQAANKLIENNSQRIDKILRPTRGEGEEIYC 376

Query: 362 IEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTRFGINIDISA 417
            +A++ER E+  +   ++  ++ N +      AL+      +R  +  L R  I   I  
Sbjct: 377 YKAEDERIESDFVISKIQELVETNPELNWGDFALLYRVNAQSRPFEDNLIRNNIPYTIVG 436

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVAL 476
           G             + L  I    D +++  ++  P    G      L +A   LE+   
Sbjct: 437 GFKFYDRQEIKDSLAYLRLIVNPFDTVSLLRVINSPRRGIGKTSVDSLLKAAQELEIPLW 496

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
               +   +  L                               A      + Q  T +  
Sbjct: 497 EIISDETSVKTL-------------------------------AGRAAKSVNQFATMIKK 525

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
            +                + +                 L    E  +  + + +  E   
Sbjct: 526 LQEQLKDFSATELFDQVMEGSGYVDDLKQKGTEEADNRLENIYELYSAIAQYQEDSED-- 583

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                       +T       +    E    + ++    ++ L F  + L GL +G  P 
Sbjct: 584 ------TSLQGYLTNASLASDLDNLDEGQEKVSLMTLHSAKGLEFPIVFLVGLEQGTLPH 637

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
             + N  LS   +  L      +   Q           R      S          S++L
Sbjct: 638 IRSLNDPLSLEEERRLCYVGITRAQEQLF-----ITHARERYVWGSKEMKTS----SQFL 688

Query: 717 QRLL 720
           Q + 
Sbjct: 689 QEIP 692


>gi|115375892|ref|ZP_01463141.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310819817|ref|YP_003952175.1| hypothetical protein STAUR_2544 [Stigmatella aurantiaca DW4/3-1]
 gi|115367070|gb|EAU66056.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392889|gb|ADO70348.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 391

 Score = 76.5 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 85/263 (32%), Gaps = 31/263 (11%)

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
              + +  S+S + +    P +     + K    P           G   H ++  L+++ 
Sbjct: 3    ALRNQHLSYSRLSRFEACPLSYRLHYLDKHTAEPGV-----PLSFGKALHAVLERLLQEV 57

Query: 824  INK--NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
            I+     P       Q+    +    L     +        I   F+  ++    S + +
Sbjct: 58   IDTEYAGPLSEERALQLYREEWAASGLSG---LDLFQQGLGILQDFVR-QQGRVDSRDIL 113

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLE 940
             V    ++ +      + GF DR+D +    V + DYK+      +E        QLSL 
Sbjct: 114  AVEKEFRLPV--GPFTVLGFIDRVDWVDDETVHVMDYKSNHQLFTREELDS--SLQLSLY 169

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
            A A +          K   L    L+   + +           +E  + +L  +  +   
Sbjct: 170  ALAARR----MWPWAKKVRLSMWMLRHGVRQETTRT-------EEQLDAALAYVETLGQQ 218

Query: 1001 LQNGEQPFISHLRLSEKSNIQSE 1023
            ++  E  F + L  +    +  +
Sbjct: 219  MEKAE-SFPARLNPN---CVYCD 237


>gi|284047984|ref|YP_003398323.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM
           20731]
 gi|283952205|gb|ADB47008.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM
           20731]
          Length = 750

 Score = 76.5 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 69/695 (9%), Positives = 167/695 (24%), Gaps = 122/695 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           ++     T +A +E+R     + G  +    L    +      +    D+         +
Sbjct: 53  NILAITFTNKAAKEMRQRVDALVGPSAKDVWL---YTFHGFCNQLLRRDIN-------AL 102

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                   +       +N L + +K L  +            I  AK            +
Sbjct: 103 PGYTTSFSIYDPSDC-KNVLKEALKKLNLDEKFYPLPGLLATISNAK----------NAQ 151

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-----E 218
                      + +          +      + + LV+ NA       +  ++      E
Sbjct: 152 VDAAAFARQAEDYHA-------KKVAEIYAEYQKHLVQSNAVDFDDLLLLTVKLLQTVPE 204

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     ++I     +      L   ++   N   +    D       W      +
Sbjct: 205 VREKYQNKFHYVLIDEYQDTNHVQYLLAKLLSAPENN--LCAVGDIDQSIYGWRGADISN 262

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       +PQ  + KL       +  +     V      R               
Sbjct: 263 ILDFEK-----DYPQARIFKLEQNYRSTQVILDAANEVIKHNAARRPKN----------- 306

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADR 396
                     +         +A  +A ++REEA  +   +R    E  K    A++    
Sbjct: 307 ----------LWTENGNGQPIAYYQARDDREEAEFVVGQIRKLQREGTKLGDMAILYRTN 356

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R  +  L   G+   +   +            S L  +    D   +  ++  P   
Sbjct: 357 AQSRMFEENLINNGVPYVMVGSLKFYDRKEVKDTLSYLRFLSNERDIQGLERIINEP--- 413

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                                        +   ++   R   + +   +P     +    
Sbjct: 414 --------------------------KRGIGAATVAKVRTLLEDSGMTLPEVLQTVQ--- 444

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV-CLDEHRKLPNL 575
              A  L+      I                L + D  +  +     +  L       + 
Sbjct: 445 ---ARELLGRAFPKIQAFSDMIQELARVKDTLPVKDLMEQVLEKSGYLEALRLEGSDQSK 501

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              +       +  +  +       N     D +  +     +        ++ ++    
Sbjct: 502 SRLDNLNEFLRIADEFAKDPGEE--NNKTLEDFLNHVALVADIDDAKLTQDSVTLMTLHS 559

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + +GG+ +G++P   +         +  L               +      +
Sbjct: 560 AKGLEFPVVFIGGMEDGLFPSQRSLEDEDKLEEERRLC--------------YVGITRAK 605

Query: 696 HLIYTRSLRENNIPTI-----ASRWLQRLLVLGGT 725
             +Y  + R   +         SR+L+ +      
Sbjct: 606 KRLYLTNCRSRMVYGHVVMYPPSRFLEEIPRNLIE 640


>gi|148238576|ref|YP_001223963.1| UvrD/REP helicase [Synechococcus sp. WH 7803]
 gi|147847115|emb|CAK22666.1| UvrD/REP helicase [Synechococcus sp. WH 7803]
          Length = 795

 Score = 76.5 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 77/770 (10%), Positives = 193/770 (25%), Gaps = 115/770 (14%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF----IEITGKKSTILPIIKSL 81
           L   +         +P   A +     T +A +E++        +   +     P   +L
Sbjct: 36  LTHRIAHLIGEHGADP---AQILAVTFTNKAAREMKERLELLLAQRLAQSQYGQP-WSTL 91

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             V + +  + +         +     L   AR++    +K  D     + +       +
Sbjct: 92  PPVEQRQLRSRIYREVTKELWIGTFHALF--ARMLRYDIDKFKDSEGLTWTKQFSIYDEA 149

Query: 142 PANAIW---LAKNL------------ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
            A ++    + + L               I   + +    + L A    +          
Sbjct: 150 DAQSLVKEIVTQELQLDPKRFEPKKTRWAISNAKNQGWLPDQLEANAEGQR-------GK 202

Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPA 241
                 + + + L   NA       +  ++   ++             +++     +   
Sbjct: 203 LTADVYRRYRKALAANNALDFDDLLLLPVQLLQQNEQVRSYWHRRFAHVLVDEYQDTNRT 262

Query: 242 TARLMS---------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
              L+           V N+  G  V    D       +             +       
Sbjct: 263 QYELIKLLVTDGKDPQVYNNWAGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGDQQSD 322

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
           + +  + +  L+        +   +N +   +                 ++ ++  +   
Sbjct: 323 EAT--RTMVKLEENYRSTATILEAANALIANN-----------------SERIDKVLRPT 363

Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTR 408
           +     ++L   D+E  EA ++   LRM    N +      A +      +R ++  L R
Sbjct: 364 RGEGELISLTRCDDEIAEAEAVVHRLRMMEAANPELTWGDMACLYRTNAQSRALEESLVR 423

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
           + I   +  G+          +   L  +    D +++  ++  P               
Sbjct: 424 WRIPYVVVGGLRFYDRREIKDVLGYLRLLINPADTVSLLRVINVP--------------- 468

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                   +       I  L            +    P     L     +  +   + I 
Sbjct: 469 --------KRGIGKTTIQRLTDAANQLGIPLWDVVSDPEAVRSLGGRSAKGLLQFCELIN 520

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                L       ++T  +  I    + +    + +              +E       +
Sbjct: 521 GLREQL-------HNTTPSDLIQQVMERSGYVSELITEGTDEAEERRRNLQELVNAGLQY 573

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            +  + G      A                  K   +  + ++    S+ L F  + L G
Sbjct: 574 QEENDEGDLEGFLASA--------ALASDADSKDTAADRVTLMTLHSSKGLEFPVVCLVG 625

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
           L +G++P   + +   S   +  L      +   +        +          +R    
Sbjct: 626 LEQGLFPSYRSLDDPASLEEERRLCYVGITRAKERLF-----LSHASERRLWGGMR---E 677

Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
           P + S +L  L                        +L    +      P 
Sbjct: 678 PAVPSVFLSELPEALVQGEIPRSGGAAIRREQRLDRLTRVDRDQPSSAPA 727


>gi|289446520|ref|ZP_06436264.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289419478|gb|EFD16679.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           CPHL_A]
          Length = 702

 Score = 76.5 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 77/640 (12%), Positives = 172/640 (26%), Gaps = 80/640 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R   + + G+K+  +  + +              L   LN   S
Sbjct: 68  GQILAITFTNKAAAEMRERVVGLVGEKARYM-WVSTFHSTCVRILRNQAALIEGLNSNFS 126

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+ +    L   IK   P                   LA+ I  ++ E  
Sbjct: 127 IYDADDS-RRLLQMVGRDLGLDIKRYSPRL-----------------LANAISNLKNELI 168

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                 A   E         A       +        L+    +G  +A+++A  +    
Sbjct: 169 DPHQALAGLTEDSDDLARAVASVYDEYQRRLRAA-NALDFDDLIGETVAVLQAFPQIAQY 227

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANH------PNGAIVLPGLDCHIPTAIWNTITE 276
            +     +++     +  A   L+  +         P G + +   D       +   T 
Sbjct: 228 YRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCV-VGDADQSIYAFRGATI 286

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++            +P      L       +  +    +V     GR             
Sbjct: 287 RNIEDFE-----RDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRR------------ 329

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALIT 393
                    E ++         +    ADNE +EA  +A    AL    +      A+  
Sbjct: 330 ---------EKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDVAVFY 380

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              N +R ++  L R GI   +  G+          + + L  +    D +++  ++  P
Sbjct: 381 RTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRILNTP 440

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G   +                   +        +   +      NT      +   
Sbjct: 441 RRGIGDRAEACVAVYAEN----------TGVGFGDALVAAAQGKVPMLNTRAEKAIAGFV 490

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           E   EL   L D + + +  ++     +     +    +  +L    L  +    H    
Sbjct: 491 EMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARL--DNLNELVSVAHEFST 548

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
           +                +      +    +    +    +  +  +     +  + ++  
Sbjct: 549 DRENAAA----------LGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTL 598

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
             ++ L F  + + G  +G++P   A +       +  L 
Sbjct: 599 HTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLA 638


>gi|124024248|ref|YP_001018555.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9303]
 gi|123964534|gb|ABM79290.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9303]
          Length = 802

 Score = 76.5 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 66/735 (8%), Positives = 181/735 (24%), Gaps = 119/735 (16%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF----IEITGKKSTILPIIKSL 81
           L   +         +P   A +     T +A +E++        +   +     P   +L
Sbjct: 36  LTHRIAHLIGAHGADP---AQILAVTFTNKAAREMKDRLELLLAQRLAESQYGQP-WSTL 91

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             V + +    +         +     L   ARL+    +K  D     +         +
Sbjct: 92  PPVDQRQLRGRIFREVTKELWIGTFHSLF--ARLLRFDIDKFRDAEGLSWTRQFSIYDEA 149

Query: 142 PANAIW---LAKNL------------ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
            A ++    + + L               I   + +    + L A  + +          
Sbjct: 150 DAQSLVKEIVTQELQLDPKRFEPKKVRWAISNAKNQGWLPDQLAAQVDGQR-------GK 202

Query: 187 FLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPA 241
                 + + + L   NA       +  +       +           +++     +   
Sbjct: 203 LTVETYRRYRKALAANNALDFDDLLLLPVQLLQQNEQIRRYWHNRFRHVLVDEYQDTNRT 262

Query: 242 TARLMS---------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
              L+           + +   G  V    D       +             +       
Sbjct: 263 QYELIKLLVTDGREPEIFDDWQGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGDKASD 322

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
             +  + +  L+        +   +N +   +                 T+ ++  +   
Sbjct: 323 DAT--RTMVKLEENYRSTSTILEAANALIANN-----------------TERIDKVLRAT 363

Query: 353 QKCFSDVALIEADNEREEAISIAIALR----MSLDENKKKSALITADRNLARRVKLELTR 408
           +     + L   D+E  EA ++   +R       +      A++      +R ++  L R
Sbjct: 364 RGEGELITLTRCDDEIAEAEAVVHRMRMLEAAHPELRWGDVAVLYRTNAQSRAIEESLVR 423

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
           + I   +  G+          + + L  +    D +++  ++  P    G          
Sbjct: 424 WRIPYIVVGGLRFYDRREIKDVLAYLRLLVNPADTVSLLRVINVPKRGIGKTTLQRLA-- 481

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                                           +  +           D E    L     
Sbjct: 482 --------------------------------DAANQLGIPLWDVVSDAEAVRSLGGRSA 509

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
           + +        +   +  +   S+  +  +     +              +E +      
Sbjct: 510 KGLLQFCELINDLQRSIQDQIPSEMIQQVMEKSGYISE------LIAEATDEAEERRRNL 563

Query: 589 SKIIETG--SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            +++        +         +           K   +  + ++    S+ L F  + L
Sbjct: 564 QELVNAALQYQEENEEGNLEGFLASAALASDADSKDTAADRVTLMTLHSSKGLEFPLVFL 623

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
            G+ +G++P   + +   S   +  L      +   +        +          +R+ 
Sbjct: 624 VGMEQGLFPSYRSLDDPSSLEEERRLCYVGMTRAKERLF-----LSHASERRLWGGMRQ- 677

Query: 707 NIPTIASRWLQRLLV 721
             P + S +L  L  
Sbjct: 678 --PAVPSLFLAELPE 690


>gi|319791429|ref|YP_004153069.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315593892|gb|ADU34958.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 704

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 83/707 (11%), Positives = 198/707 (28%), Gaps = 94/707 (13%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
             +       L P  +A++T    T +A  E+R    ++ G+ +  + I+ +   +    
Sbjct: 36  HKIGRLIQAGLEPKRIAAIT---FTNKAAAEMRERAKDLIGRDARKV-IVCTFHALGVRM 91

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
              D  +   L P  S +                  D +  +  ++  +  I+ A     
Sbjct: 92  MREDGAV-LGLKPAFSILD----------------SDDVTKILKDAGGTTDIATARIWQW 134

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
                  I   +      +   A   +             +   + +     +     P+
Sbjct: 135 T------ISKWKNMGLDAQQAAAAAVDDNERITAEVMRHYEERLQAYQSVDFDDLIGMPL 188

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                     A+       G I++     +      ++  +A   + A      D     
Sbjct: 189 RLLHDFPEVRAKWQAAL--GHILVDEYQDTNATQYEVLKALAG--DRARFTAVGDDDQSI 244

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             W                            LD L     D   L     ++       S
Sbjct: 245 YGWRGA------------------------TLDNLKKLPIDYPTL--KVIKLEQNYRSTS 278

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA-ISIAIA--LRM----- 380
                 +     N  +    + +       V +++AD E  EA  ++A    LR      
Sbjct: 279 AILRAANNVIGPNPKLFPKTLFSELGEGEPVRVVDADTELHEAERAVARIVSLRAGDAVT 338

Query: 381 --SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             +  +  +  A++    + AR ++  L R  I   +S G           L        
Sbjct: 339 QGAQHKEFRDFAILYRANHQARILEQALRRAQIPYKVSGGQSFFDRAEIKDLCGWFRLWV 398

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD-LKSLVLDRIA 497
             +D  A    +  P    G           +   ++L     S  +   +    LD + 
Sbjct: 399 NNDDDPAFLRAITTPKRGIGHTTLASLGTFASQYKLSLFAALFSPSLPSVIPKRTLDGVH 458

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                 +   +++R +   +     ++D + +       Y+  ++        ++  +  
Sbjct: 459 EFGRYINDLEYRARRTMGAEASRTFMLDWLKEIDYERHLYEGEESEAAAATRWNNVLEFV 518

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               Q               ++ G+T      ++ +T S +                  T
Sbjct: 519 DWMSQRAGGSLDDASGANDNDDSGETERKSLLEVAQTISLL-----------------ST 561

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
           +  + +  + + +     S+ L +  ++L G+ EG+ P     +       Q  ++ +T 
Sbjct: 562 ISEREQDQNVVTLSTLHASKGLEWPHVVLIGVTEGMLPFKLDDDN----GRQKVVSDETT 617

Query: 678 EKYIGQAAHDFEMANGT-RHLIYTRSLRENNI----PTIASRWLQRL 719
           ++   +    +       R L  + + +        P   SR++  +
Sbjct: 618 QRLQEERRLMYVGITRAQRTLAVSWTKKRKQGRDMVPCQPSRFIAEM 664


>gi|260222507|emb|CBA32139.1| ATP-dependent DNA helicase rep [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 709

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 71/746 (9%), Positives = 169/746 (22%), Gaps = 121/746 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP-PVS 104
            +     T +A  E+R    +    K+    ++ +   +       D  +        + 
Sbjct: 55  RIAAITFTNKAAAEMRER-AKHLIGKAAKDVVVCTFHALGVRMLREDGAVLGLKPQFSIL 113

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA-----KNLADIIDII 159
           +   +  + +      +            +     ++   A+  A     + +A  +   
Sbjct: 114 DSDDVTSIIKDAGGTIDAATARQWQWTISAWKGAGLNSDQALAAAAGDNERIIATAMARY 173

Query: 160 ETEEK-----KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
           E          ++DL +L  +    +            + W   L               
Sbjct: 174 EERLVAYQSVDFDDLISLPLKLLRDYPQ--------VRERWQALL--------------- 210

Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
                        G +++     +      ++  +      A      D       W   
Sbjct: 211 -------------GHVLVDEYQDTNATQYEVLKYLVGEK--ARFTAVGDDDQSIYGWRGA 255

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
           T  +      +                                 ++       S      
Sbjct: 256 TLDNLKKLPVDFP--------------------------TLKVIKLEQNYRSTSAILRAA 289

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-----------D 383
           +     N  +    + +       V +++ADNE  EA      ++               
Sbjct: 290 NNVIGPNPKLFPKTLFSELGEGEPVRIVDADNEEHEAERAVARIQSLRGNGVPDAQGKQY 349

Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
           +  +  A++    + A+  +  L + GI   +S G           L +        +D 
Sbjct: 350 KEFRDFAVLYRANHQAKPFEKALRKAGIPYKVSGGQSFFDRAEIRDLCAWFRLWSNNDDD 409

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            A    V  P                          K       L +L       + +  
Sbjct: 410 PAFLRAVTTP--------------------------KRGIGHTTLGTLGTFATQYKLSLF 443

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT-----KLTV 558
                 S  S    +    L +            +  + +      I DW      +  +
Sbjct: 444 ESLFSSSLASVLSAKALGSLHEFGRYINDLEFRARHTEGAEAAMAFIMDWLKEIGYEKHL 503

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              ++       K  N+    E              G          +++   +    T+
Sbjct: 504 YDGEDSEGVASAKWSNVMEFCEWMAQRCGGQIDDAAGVTNTREVKNLLEVSQTIALLSTI 563

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL---SRVMQSDLNLK 675
             + +  + + +     S+ L +  ++L G+ EG+ P            S +     N  
Sbjct: 564 SEREKDQNVVTLSTLHASKGLEWPHVMLVGVTEGMLPFKLGDGADPLGGSTLEHESANDD 623

Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            A +   +    +      +  +     R           L    +          K+  
Sbjct: 624 IAARLQEERRLMYVGITRAQRSLAVSWTRRRKKGREMVAALPSRFIAEMGLDQSTAKEDP 683

Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFP 761
           +  L   R                 P
Sbjct: 684 REKLRALRAEFAAKALVTAANAAAKP 709


>gi|229816023|ref|ZP_04446344.1| hypothetical protein COLINT_03076 [Collinsella intestinalis DSM
           13280]
 gi|229808337|gb|EEP44118.1| hypothetical protein COLINT_03076 [Collinsella intestinalis DSM
           13280]
          Length = 950

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 74/728 (10%), Positives = 170/728 (23%), Gaps = 111/728 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADL-LLSYNLNPPVS 104
            +     T +A  E+R     +          + +   +       D  LL Y     + 
Sbjct: 131 QILAITFTNKAAAEMRERLSAMLPDGGMRGMWVCTFHAMCVRMLREDADLLGYTGQFTIY 190

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +      + R I+                S +S                      +    
Sbjct: 191 DDDDSRRMVREIMAHLGIEQKQYPINMIRSKIST--------------------AKNAMI 230

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             E       +        AA            RL   NA       +  +         
Sbjct: 231 GPE---EFIEKASSPQEQKAAQ----VYLELERRLRAANAMDFDDLLVRTLELLRTRPEV 283

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I +     +      + + +A      +V+   D       W      + 
Sbjct: 284 LEKYQERFRYISVDEYQDTNHVQYEIANLLAAKYQNLMVV--GDDDQSIYSWRGADISNI 341

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +       Q  + KL                                   +    
Sbjct: 342 LDFEKDFK-----QAKVVKL---------------------EQNYRSTGHILAAANAVVR 375

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALITADRN 397
            N+   E ++         +   +A +ER+E   IA  +    +   +    A+      
Sbjct: 376 NNSQRKEKRLFTDLGDGEKIQAYQASDERDEGRWIASEIEKLRAAGTSYDDMAVFYRTNA 435

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++    R G+   I  G           + + L  I    D M++  ++  P    
Sbjct: 436 QSRILEDMFLRAGVPYKIVGGTRFFDRAEIRDVMAYLKMIVNPADEMSVKRVINTPRRGI 495

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G            +   +         I +             +  ++     R+  E K
Sbjct: 496 GSTSIGKIEDLARMNACSF-FQACELAIAETGMFSAKVRHALGDFVNIVREGRRMDGELK 554

Query: 518 ELAVLLVDH--ILQCITPLVTYKTNKNSTCGNLSISDWTKL---------TVTCLQNVCL 566
           ++  ++VD   ++Q      T +    +      +    +          T+  L+ +  
Sbjct: 555 DVVEMIVDKSGLVQAFRAEGTMEAESRAENIQEFLGVAAEFEETHEDIEGTLESLEELRA 614

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSC----------------------------- 597
                +P +     G  +    +    T                                
Sbjct: 615 AGVADVPEVAPMPAGIAMPMSTAMTAATSVLSDALANPSMAPALTPNAAALAAVEVERMY 674

Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                     ++  L     +     +S  + ++    ++ L F  + + G+ EG++P  
Sbjct: 675 GPLACKALPALLEWLALRSDLDALAGESHAITMMTVHSAKGLEFPAVFVAGMEEGIFPHV 734

Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
              +      ++ +  L        +       A        TR    +      SR++ 
Sbjct: 735 AGWSDDDPAKLEEERRLAYVAITRARKRLFLTYAA-------TRRTYGSTQANPRSRFVN 787

Query: 718 RLLVLGGT 725
            +      
Sbjct: 788 EIPAENIE 795


>gi|310657865|ref|YP_003935586.1| ATP-dependent DNA helicase [Clostridium sticklandii DSM 519]
 gi|308824643|emb|CBH20681.1| ATP-dependent DNA helicase [Clostridium sticklandii]
          Length = 720

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 74/696 (10%), Positives = 186/696 (26%), Gaps = 124/696 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
           S+     T +A +E++     + G ++       I +   +       D+          
Sbjct: 52  SILAITFTNKAAKEMKERVSALIGDRAKDMW---ISTFHSLCVRILRRDIERI------- 101

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               R   +        + + + IK+         P S  +AI  AK+   +++      
Sbjct: 102 -GYNRSFVIYDTQDQL-SLIKECIKECGLREDSFKPSSVLSAISGAKD--KLLN------ 151

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----- 218
              +   A     +          +      +  +L   NA          +        
Sbjct: 152 --PKAFEARYFNDFR------LSKISKVYDLYQRKLKSNNALDFDDLIFKTVELLKTDEF 203

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +  A   L++ ++       V+   D       W      +
Sbjct: 204 VRDFYQRKFQYVMVDEYQDTNHAQYVLINLLSEMHKNLCVV--GDDDQSIYGWRGADIAN 261

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +              +  L+      + + + +N +  R++      L     +
Sbjct: 262 ILDFEKDYKD---------AFVVKLEQNYRSTEVILDGANSVIKRNLGRKNKKLWTQLKE 312

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKKKSALITAD 395
                               + L +A +E++EA  IA  ++      D N +  AL+   
Sbjct: 313 G-----------------EKIKLHKAYDEKDEANFIAREIKKRQEEEDRNLRDFALLYRT 355

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L +  I+  I   +          + + L  +    D +A+  ++  P  
Sbjct: 356 NAQSRALEEALIKQSISYKIFGSLKFYDRKEIKDIMAYLRLVQNPLDDLALKRIINVPKR 415

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G         +  +   +L G  +     DL + V   +             S +  +
Sbjct: 416 GIGAKTLEKLEERALVTGESLFGLLHDLSGFDLSTKVKTTLNKFVMMI-----NSFMDMK 470

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
           +       V  ++     +   K  +                                  
Sbjct: 471 EILPLTEFVQKVIDNTKYVDELKAEETD-------------------------EANGRIE 505

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             EE    +        E       +++  +  +  + +             + ++    
Sbjct: 506 NIEEFKSVVMEFMQNSEEKTLEEFLSSVSLVSDLDSIDEE---------DDFVTLMTLHS 556

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + L G+ EG++P + A              +    +   +    +      +
Sbjct: 557 AKGLEFPVVFLAGVEEGIFPISRA--------------MLDENQLEEERRLCYVGMTRAK 602

Query: 696 H-LIYTRSLRE----NNIPTIASRWLQRLLVLGGTD 726
             L  T +            IASR++  +      +
Sbjct: 603 QILYITYANERTLYGRRNHAIASRFISEIDESLFEE 638


>gi|90581055|ref|ZP_01236855.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14]
 gi|90437751|gb|EAS62942.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14]
          Length = 723

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 60/607 (9%), Positives = 136/607 (22%), Gaps = 127/607 (20%)

Query: 166 WEDLHALKNEKYGM--------------WWLLAADFLKI--------------------- 190
            ED + L ++                   W        I                     
Sbjct: 108 PEDFNILDSDDQMRLLRRLIKAQNLDEKHWPARQAAWYINAKKDEGLRPKHVETYSDPVE 167

Query: 191 -----ASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIP 240
                    + E              +       ++       +     I++     +  
Sbjct: 168 QTWLRIYTAYQEACDRAGMVDFAELLLRSYELLRDNKHIREHYQARFKHILVDEFQDTNS 227

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                +  +A       V+   D       W     ++     +    ++          
Sbjct: 228 IQFAWLRLMAG--PDCHVMIVGDDDQSIYGWRGAKIENIQRFLNEFKDAS---------- 275

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                           S  +              +     N + +  K+         ++
Sbjct: 276 ----------------SIFLEQNYRSTGNILNAANELIANNNERMGKKLWTDGGEGEPIS 319

Query: 361 LIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAG 418
           L  A NE +EA      ++   D+     ++A +      +R ++  L + G+   I  G
Sbjct: 320 LYSAFNELDEARFAVGKIKEWRDQGGSLNETAFLYRSNAQSRVLEEALIQAGLPYRIYGG 379

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
           +            S +  I   ND  +   +V  P    G       R          RG
Sbjct: 380 MRFFERQEIKDALSYMRLISNRNDDASFERVVNTPTRGLGDRTLETIRLAAR-----DRG 434

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                  + L    +                         LA    + + + I  +   +
Sbjct: 435 LTMWQSSIALLEEQV-------------------------LAGRAANSLRRFIELINALE 469

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
            +           +  + +            +    +   EE  T +  F    E  S  
Sbjct: 470 DDTADLPMYQQTDEVIRNSGLRAMYEQEKGEKAQARIENLEELVTATRQFEIPEEAESMT 529

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
              A                    +    + ++    ++ L F  + + G+ E       
Sbjct: 530 PLAAFL-----AHAALEAGDGQADDFEDAVQLMTMHSAKGLEFPVVFMVGVEE------- 577

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN----NIPTIASR 714
               F S     ++     E+ +        M    + L  T +        +     SR
Sbjct: 578 --GMFPSSRTTEEVGRLEEERRLCYVG----MTRAMQKLYITYAEMRRLYGKDNFHKPSR 631

Query: 715 WLQRLLV 721
           +++ +  
Sbjct: 632 FIREIPD 638


>gi|330468532|ref|YP_004406275.1| RecB family exonuclease [Verrucosispora maris AB-18-032]
 gi|328811503|gb|AEB45675.1| RecB family exonuclease [Verrucosispora maris AB-18-032]
          Length = 320

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 65/209 (31%), Gaps = 18/209 (8%)

Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                   + P   P       + S S        P     R I +L   P  ++     
Sbjct: 18  TADPVITQQAPTSTPLPPTVRASLSPSRAADFKTCPLLYRFRSIDRLPERPTVEQA---- 73

Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH--------IDIIWRH 858
            RGTL H ++  L        TP+    +          E             +D +   
Sbjct: 74  -RGTLVHAVLERLFDLPAAGRTPQAAGDLVAPQWDRLVTEQPELAGLFTDDGTVDAVEFL 132

Query: 859 L-FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
                +   +   E+  +  +E           I+   + + G+ DR+D+   G + + D
Sbjct: 133 RSAATLLEGYFSVEDPRR--LEPAERESLISAVID-EELLIRGYLDRLDVAPDGALRVVD 189

Query: 918 YKTGDNPKKETAQKLIDPQLSLEAAALKA 946
           YKTG  P++    + +  QL   A  L  
Sbjct: 190 YKTGGAPREAFEARAL-FQLKFYALVLWR 217


>gi|138894263|ref|YP_001124716.1| ATP-dependent nuclease subunit A [Geobacillus thermodenitrificans
            NG80-2]
 gi|251764525|sp|A4IKW7|ADDA_GEOTN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|134265776|gb|ABO65971.1| ATP-dependent nuclease, subunit A [Geobacillus thermodenitrificans
            NG80-2]
          Length = 1242

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 97/969 (10%), Positives = 230/969 (23%), Gaps = 139/969 (14%)

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE-TEEKKW 166
            RL E   LI     +L     +LY                   + A++ID  +   ++  
Sbjct: 260  RLREDMDLIADLERRLSGSWDELYHALQSLSFGRLPPCRGDGFD-AELIDEAKSLRDQAK 318

Query: 167  EDLHALKNEKYGMWWLLAAD--------------FLKIASKYWTERLVELNASSPVGYQI 212
            + + AL++  + +                      ++  S  +     E         + 
Sbjct: 319  KKIEALRDNVFSLHPSAWLRHMREMKPVVETIAALVRRFSAMFEAAKREKGIVDFSDLEH 378

Query: 213  ALMRAE--------------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN-HPNGAI 257
              +R                A    +     +++     +      ++  V         
Sbjct: 379  YCLRILRQYDPETGEWQPSSAALEYQAQFDEVLVDEYQDTNLVQETILQLVKKGSERTGN 438

Query: 258  VLPGLDCHIPTAIWNTITEKSTNITSSNTTY---STHPQYSLAKLLDFLDIKREDVKRLG 314
            +    D       +               T    +   +  LA          +    L 
Sbjct: 439  LFMVGDVKQSIYRFRLAEPMLFLDKYKRFTADGEAGGMKIDLASNFRSRAEVLDGTNFLF 498

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                      MV  ++      +D         ++  I +  +     E   E E A   
Sbjct: 499  AQIMGEAVGEMVYDEAAQLKYGADYPEGTDAVPEVMIIDRQRTSEEDEEETAELEAAELE 558

Query: 375  AIALRMSLDEN-------------------KKKSALITADRNLARRVKLELTRFGINIDI 415
            +  +   + E                     +   ++      A ++  +L   GI    
Sbjct: 559  SRLMAEKIKEIVSRPFYVYDRSSGQQRRAMYRDIVVLVRSMTNAPQMIEQLQAQGIPAAA 618

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                        S++ SLL  I      + +A +++ PL +F   E  + R  +      
Sbjct: 619  DLSSGYFQATEISVMLSLLKVIDNPYQDIPLAAVLRSPLFRFDENELAMIRLSDPKGTFF 678

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                       +       +         +  W++          +  +    Q    + 
Sbjct: 679  EALQAFCQKTAETGEEENAKEKAISFLNKLEEWRTMARRRSLADLIWQLYRDTQFYDFVG 738

Query: 536  TYKTNKNSTCGNLSISDWTKL--------TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                 K       ++ D  +             L+ +   + R          G     +
Sbjct: 739  ALPGGKQRQANLRALYDRARQYESTSFRGLFRFLRFIERLQERGDDLGAARPLGDQEDVV 798

Query: 588  FSKIIETGSCIKANAIEWIDIITR----------LIDGETVKPKIEKSSTLFILGTLESR 637
                I +   ++   +  + +             L+D E           L I       
Sbjct: 799  RVMTIHSSKGLEFPIVFLVGLARPFYTRDLHSPYLLDKELGFAARFVHPRLRISYPTLPL 858

Query: 638  L--------------LNFDTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTA 677
            L              +    + L    E ++   +  +       +     +S   L   
Sbjct: 859  LAIQVKKRLELLAEEMRILYVALTRAKEKLYLLASVNDADKEIEKWKGVAAESGWLLPDD 918

Query: 678  EKYIGQAAHDF--EMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
             +   ++  D+        R         R + I +  S W   ++        +    R
Sbjct: 919  VRASARSYLDWIGRALIRHRDGRSLVEVNRPDEIASHPSVWRFEIVSAAKLRNAEVSTDR 978

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ-------------LIND 781
                     +             +    L  + R    + ++                  
Sbjct: 979  EDGGALVALEQGRPVPTQGEWEEEARRRLLWRYRYGKETVVRAKQSVSELKEQQALFGEQ 1038

Query: 782  PYAVYARRI---LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
                  R+    L        +K     ++GT  H ++  L       +   I   + ++
Sbjct: 1039 ADEWLPRKGTAPLFSRPRFMQEKTLTPAEKGTALHVVMRHL-DLHAPMDESSIRSQIIRL 1097

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------ 892
            ++           +D         I   F     +   +  +++  +P  + +       
Sbjct: 1098 VEKELLSAEQAETVDA------AAIVAFFATDIGRRLCAAREVYREVPFSLGLPADELYG 1151

Query: 893  ------SIGIHLTGFADRIDLLKSGFVDITDYK----TGDNPKKETAQKLIDP-----QL 937
                     + + G  D +   + G   + DYK    TG    ++             Q+
Sbjct: 1152 SEGMESGRRLLVQGVVDCVFADERG-YVVIDYKTDEVTGRFAGQKEEATRFLLGRYGGQM 1210

Query: 938  SLEAAALKA 946
             L   A++ 
Sbjct: 1211 RLYRRAIEQ 1219


>gi|196248138|ref|ZP_03146840.1| recombination helicase AddA [Geobacillus sp. G11MC16]
 gi|196212922|gb|EDY07679.1| recombination helicase AddA [Geobacillus sp. G11MC16]
          Length = 1242

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 93/969 (9%), Positives = 228/969 (23%), Gaps = 139/969 (14%)

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE-TEEKKW 166
            RL E   LI     +L     +LY                   + A++ID  +   ++  
Sbjct: 260  RLREDMDLIADLERRLSGSWDELYHALQSLSFGRLPPCRGDGFD-AELIDEAKSLRDQAK 318

Query: 167  EDLHALKNEKYGMWWLLAAD--------------FLKIASKYWTERLVELNASSPVGYQI 212
            + + AL++  + +                      ++  S  +     E         + 
Sbjct: 319  KKIEALRDNVFSLHPSAWLRHMREMKPVVETIAALVRRFSAMFEAAKREKGIVDFSDLEH 378

Query: 213  ALMRAE--------------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN-HPNGAI 257
              +R                A    +     +++     +      ++  V         
Sbjct: 379  YCLRILRQYDPETGEWQPSSAALEYQAQFDEVLVDEYQDTNLVQETILQLVKKGSERTGN 438

Query: 258  VLPGLDCHIPTAIWNTITEKSTNITSSNTTY---STHPQYSLAKLLDFLDIKREDVKRLG 314
            +    D       +               T    +   +  LA          +    L 
Sbjct: 439  LFMVGDVKQSIYRFRLAEPMLFLDKYKRFTADGEAGGMKIDLASNFRSRAEVLDGTNFLF 498

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                      MV  ++      +D         ++  I +  +     E   E E A   
Sbjct: 499  AQIMGEAVGEMVYDEAAQLKYGADYPEGTDAVPEVMIIDRQRTSEEDEEETAELEAAELE 558

Query: 375  AIALRMSLDEN-------------------KKKSALITADRNLARRVKLELTRFGINIDI 415
            +  +   + E                     +   ++      A ++  +L   GI    
Sbjct: 559  SRLMAEKIKEIVSRPFYVYDRSSGQQRRAMYRDIVVLVRSMTNAPQMIEQLQAQGIPAAA 618

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                        S++ SLL  I      + +A +++ PL +F   E  + R  +      
Sbjct: 619  DLSSGYFQATEISVMLSLLKVIDNPYQDIPLAAVLRSPLFRFDENELAMIRLSDPKGTFF 678

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                       +       +         +  W++          +  +    Q    + 
Sbjct: 679  EALQAFCQKTAETGEEENAKEKAISFLNKLEEWRTMARRRSLADLIWQLYRDTQFYDFVG 738

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                 K       ++ D  +   +          R +  L    +    +       +  
Sbjct: 739  ALPGGKQRQANLRALYDRARQYESTSFRGLFRFLRFIERLQERGDDLGAARPLGDQEDVV 798

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEK------------------SSTLFILGTLESR 637
              +  ++ + ++     + G +                            L I       
Sbjct: 799  RVMTIHSSKGLEFPIVFLVGLSRPFYTRDLHSPYLLDKELGFAARFVHPRLRISYPTLPL 858

Query: 638  L--------------LNFDTLILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTA 677
            L              +    + L    E ++   +  +       +     +S   L   
Sbjct: 859  LAIQVKKRLELLAEEMRILYVALTRAKEKLYLLASVNDADKEIEKWKGVAAESGWLLPDD 918

Query: 678  EKYIGQAAHDF--EMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
             +   ++  D+        R         R + I +  S W   ++        +    R
Sbjct: 919  VRASARSYLDWIGRALIRHRDGRSLVEVNRPDEIASHPSVWRFEIVSAAKLRNAEVSTDR 978

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ-------------LIND 781
                     +             +    L  + R    + ++                  
Sbjct: 979  EDGGALVALEQGRPVPTQGEWEEEARRRLLWRYRYGKETVVRAKQSVSELKEQQALFGEQ 1038

Query: 782  PYAVYARRI---LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
                  R+    L        +K     ++GT  H ++  L       +   I   + ++
Sbjct: 1039 ADEWLPRKGTAPLFSRPRFMQEKTLTPAEKGTALHVVMRHL-DLHAPMDESSIRSQIIRL 1097

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------ 892
            ++           +D         I   F     +   +  +++  +P  + +       
Sbjct: 1098 VEKELLSAEQAETVDA------AAIVAFFATDIGRRLCAAREVYREVPFSLGLPADELYG 1151

Query: 893  ------SIGIHLTGFADRIDLLKSGFVDITDYK----TGDNPKKETAQKLIDP-----QL 937
                     + + G  D +   + G   + DYK    TG    ++             Q+
Sbjct: 1152 SEGMESGRRLLVQGVVDCVFADERG-YVVIDYKTDEVTGRFAGQKEEATRFLLGRYGGQM 1210

Query: 938  SLEAAALKA 946
             L   A++ 
Sbjct: 1211 RLYRRAIEQ 1219


>gi|298345243|ref|YP_003717930.1| ATP-dependent DNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|298235304|gb|ADI66436.1| ATP-dependent DNA helicase [Mobiluncus curtisii ATCC 43063]
          Length = 877

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 88/698 (12%), Positives = 185/698 (26%), Gaps = 107/698 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T +A  E+R     + G  +  +  + +          A+             
Sbjct: 111 EVLAITFTNKAAAEMRQRVESLVGNAAKYM-WVSTFHSACVRILRAEADTL--------G 161

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           + R   +          L + I       P   P          K+ A  I   + E   
Sbjct: 162 VTRSFSIYD--TADTKALLNRIIKGRGLDPKRFPP---------KSFAAKISQAKNELIT 210

Query: 166 WEDLH-ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEA 219
            E        +K                  + + L   NA        + +       + 
Sbjct: 211 PEVFALGAGVDKMS-------QLTAEIYTEYQQLLRRANAFDFDDLIASTVYLWKAHPDI 263

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMS-----TVANHPNGAIVLPGLDCHIPTAIWNTI 274
               +     +++     + PA   L+         +    A +    D       +   
Sbjct: 264 LARYRAKFRHVLVDEYQDTNPAQYELIRLLTVGATGDAQPPAELTVVGDSDQSIYAFRGA 323

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
           T ++     S+   +T           +L+        + +V+N +   +    K  L  
Sbjct: 324 TIRNIEEFESDFPGAT---------TVYLEQNYRSTGTILSVANAIISENEGRRKKNLWT 374

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALI 392
           D                         L  AD +R+EA  I   L+    E  +  + A+ 
Sbjct: 375 DAGQGMQAV-----------------LYAADTDRDEAAFIVRELQKLRQEGSSWDEFAVF 417

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R ++  LTR GI   +  G             + L A     D   +  ++  
Sbjct: 418 YRTNAQSRSLEEMLTREGIPYRVVGGTKFYDRREIKDAIAYLCAAANPADDGNLLRVLNE 477

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P    G       R  +  E +             L+  +         +      ++  
Sbjct: 478 PKRGLGDKAVQTIREVSLSENLDF--------GQALRQFL-----PGGTHHGDLSAKASA 524

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
              +    +  +  +     PL           G L                       L
Sbjct: 525 GITEFVGVLDAMRALDAAGAPLDEILDTALEDSGYLP------KLRKSNDPQDDARVENL 578

Query: 573 PNLWFEEEGKTLSSLFSKIIETGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
             L    +  +LS   +++ +      + A+A +  D   +                + +
Sbjct: 579 AELRNVAQDFSLSEPDARLADFLERISLVADADQLPDTAGQPERPADPVHPAAP-PEVTL 637

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L F+T+ + G+ +G++P + +              L++ +    +    +  
Sbjct: 638 MTVHTAKGLEFNTVFVTGMEDGLFPHSRS--------------LESPQDIAEERRLAYVA 683

Query: 691 ANGTR-HLIYTR-SLRENNIPTI---ASRWLQRLLVLG 723
               R  L  TR + R     T+   ASR+L  +    
Sbjct: 684 VTRARQRLYLTRCAARTVFGETVTMPASRFLDDIPAEL 721


>gi|226940710|ref|YP_002795784.1| RecB [Laribacter hongkongensis HLHK9]
 gi|226715637|gb|ACO74775.1| RecB [Laribacter hongkongensis HLHK9]
          Length = 271

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 15/199 (7%)

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            S + +L + P    A+ +L +               GT  H       + R++ +    
Sbjct: 9   ASSLAELFDCPARWAAKHLLGMRLPSS-----GAARLGTAVHAGTALFDQSRLDGHPLTA 63

Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF-LEHEEKIQSSIEK----IFVNIP 886
           +     ++D+   K++   + ++ W     + +    L    +  + I        V + 
Sbjct: 64  DEAAGALVDALHGKDDAEGNGEVDWGDTDPRSAEKIGLALHARYCADIAPHQDYTGVEVS 123

Query: 887 AK-MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN---PKKETAQKLIDPQLSLEAA 942
            + + I  +GI LTG  DRI +L  G + I D KTG            +   PQ+ +   
Sbjct: 124 CERLEITDLGIALTGTTDRIRMLPDGQLGIVDLKTGGRAVGSDGTAVTQGHGPQMGVYEL 183

Query: 943 ALK-AGSFSQIDCRKVANL 960
             + A         ++  L
Sbjct: 184 IAEFAVGQPLTAPAQIIGL 202


>gi|91793703|ref|YP_563354.1| exodeoxyribonuclease V, gamma subunit [Shewanella denitrificans
           OS217]
 gi|91715705|gb|ABE55631.1| exodeoxyribonuclease V, gamma subunit [Shewanella denitrificans
           OS217]
          Length = 1375

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 98/813 (12%), Positives = 213/813 (26%), Gaps = 124/813 (15%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPII--- 78
           +L+  L +          LLAS  + V +      LR E     G  + +   LP     
Sbjct: 12  VLSEQLAKLLATPLDETNLLASEHVLVQSPGMSTWLRLEVARHNGIAAALEFPLPSSFIW 71

Query: 79  ----KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL---------ILIWRNKLPD 125
                 L DV ++       +++ L   +  +    + A L           +     P+
Sbjct: 72  QLCHTLLPDVPKDNAFTKPAMTWKLMDLLPRLLDDADFAPLANYLTTELATELAPELAPE 131

Query: 126 IIKDLYPESPLSLPISPANAIWLAKN------------LADIIDIIETEEKKW------- 166
           +  ++ P+   + P S + AI L+              +ADI D       +W       
Sbjct: 132 LATEIKPDQAAAAPDSRSQAIVLSAAQDAIKRYQLCSRIADIFDQYLVYRPEWILAWEQN 191

Query: 167 ---EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                L           W       +    Y  + L             +L+ A A+   
Sbjct: 192 KPLTSLDNKLKLDDSQLWQPKL--WRALIDYNRDELGAS-PYHRANLHESLLEALADEQS 248

Query: 224 --KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA----------IW 271
                   + + G +   P T  ++  +A      ++      H                
Sbjct: 249 SVANLPQRLFVFGISSMPPQTLEILHQLAGRIPVVMLALSPCEHYWGDIIDPKTRARMAL 308

Query: 272 NTITEKSTNITSSNTTYSTHPQ--------YSLAKLLDFLD-----------IKREDVKR 312
               +K       ++    +P           L  L+  L            +K  D+  
Sbjct: 309 QYADKKQLAQDWESSLEVGNPLLANNGKLGRELLDLMLALPSEHTDFGYDCYVKPWDINL 368

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK-------------CFSDV 359
             +  N+    +   +   L     D+   + L   +                      +
Sbjct: 369 HSDDENDAVPVNTPQNAKLLHGVQYDILQMETLGVSLGPDAALYNNIPNRRLLQPDDDSI 428

Query: 360 ALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLEL--------- 406
            +    +   E  ++   L   L    +       ++  D          +         
Sbjct: 429 TIRTCHSPLREVETLHNHLLAMLSRCPQLHPKDIVVMMPDVAAYAPYIDAVFGTANAEAS 488

Query: 407 --------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAK 456
                       I   I+     + +   +   SLLN          I  +++ P  L +
Sbjct: 489 GIDGARQQGNSYIPYAIADRGAAAESPLINSFLSLLNINQSRFALTEIMGILEVPAILRR 548

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDL--------KSLVLDRIATQKNNTHVPHW 508
           F      LS+ +  L+   +R  ++ +    L              R        H    
Sbjct: 549 FKLSGDELSQIRLWLDEANVRWGRDEHSRAALNLPAFEQNSWAFGIRRLILGYAFHDGAP 608

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
             + +     L       + + +  L T    +       + S       T LQ++   +
Sbjct: 609 LYQDTLLVPGLEGQSAQALGKLMNFLETLDDYRALFAAPCTTSSRLFELQTLLQDIFEAD 668

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                    +   + ++ L  ++   G     +         + +    V  +     ++
Sbjct: 669 DD--EREEIQAINEAIAKLSEELNGAGHQGMLDIEVLKIWFNQRLSESRVGQRYLAG-SV 725

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
                +  R + F+ + L G+N+G +P+      F             + +   +     
Sbjct: 726 NFCTLMPMRSIPFNMVCLLGMNDGDYPRVQHPVGFDLMAHFGAKKGDRSRRADDRYLFLE 785

Query: 689 EMANGTRHLIYTR--SLRENNIPTIASRWLQRL 719
            + +    L  +       +N   I S  +  L
Sbjct: 786 ALLSAREQLYISYIGQSERDNSERIPSMLVSEL 818


>gi|56419217|ref|YP_146535.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus
            HTA426]
 gi|81558057|sp|Q5L263|ADDA_GEOKA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|56379059|dbj|BAD74967.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus
            HTA426]
          Length = 1242

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 76/807 (9%), Positives = 186/807 (23%), Gaps = 126/807 (15%)

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN-HPNGAIVLPGLDCHIPTAIWNTITEK 277
            A    +     +++     +      ++  V         +    D       +      
Sbjct: 399  AALEYQAQFDEVLVDEYQDTNLVQEAILQLVKKGSERTGNLFMVGDVKQSIYRFRLAEPM 458

Query: 278  STNITSSNTTY---STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
                     T        +  LA          +    L           MV  ++    
Sbjct: 459  LFLDKYKRFTADGEEGGMKIDLASNFRSRREVLDGTNFLFAQLMGETVGEMVYDEAAQLK 518

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR--------------- 379
              +D    +    ++  I +  +     E   E E A   A  +                
Sbjct: 519  YGADYPEGEDAAPEVMIINRQRAAEEDEEEAAEWEAAELEARLMAKKIKEIVSAPFYVYD 578

Query: 380  ----MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                       +   ++      A ++  +L   GI                SI+ SLL 
Sbjct: 579  RSSGQPRRAMYRDIVILVRSMTNAPQMIEQLQAQGIPAAADLSSGYFQATEISIMLSLLK 638

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             I   +  + +A +++ PL +F   E  + R  +                 + K     +
Sbjct: 639  VIDNPHQDIPLAAVLRSPLFRFDENELAMIRLADPKGTFYEALCSFRQKPAETKEEANAQ 698

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                     +  W++          +  +    Q    +      +       ++ D  +
Sbjct: 699  RKAAAFLERLEGWRTMARRRSLADLIWQLYRDTQFYDFVGALPGGRQRQANLRALYDRAR 758

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
               +          R +  L    +    +    +  +    +  ++ + ++     + G
Sbjct: 759  QYESTSFRGLFRFLRFIERLQERGDDLGAARPLGEQEDVVRIMTIHSSKGLEFPIVFLAG 818

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
                                  LL+ +              +    P L+   +  L L 
Sbjct: 819  LARPFHTR--------DLHHPYLLDKELGFAARFVHPRLRISYPTLPLLAIQTKKRLELL 870

Query: 676  TAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIAS--------------------- 713
              E  I      +      +  L    S+ +                             
Sbjct: 871  AEEMRI-----LYVALTRAKEKLYLLASVNDAAKEIEKWKSAASERGWLLPDDVRASARS 925

Query: 714  ------RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK--------- 758
                  R L R    G        ++       W   +         +  +         
Sbjct: 926  YLDWIGRALIRHRDGGALAGTKAPEEVASHPSVWRVAIVPAADLRGAEAAREEMDGGVLL 985

Query: 759  ------PFPPLEAQPRTYSFSEIKQL----------------INDPYAVYARRILKLDFI 796
                  P P      +      + +                 + +  A++  +  +    
Sbjct: 986  ALEQGRPVPVEGGWQKEVKRRLLWRYSYEKETAVRAKQSVSELKEQRALFGEQADEWRPR 1045

Query: 797  PH-----------FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                          +K     ++GT  H ++  L  +    +   I   + ++++     
Sbjct: 1046 QGTAPVFSRPRFMQEKTLTPAEKGTALHVVMRHLDLQAPL-DESWIRSQIVRLVEKELLS 1104

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI------------ES 893
                  +D         I+  F     +   +  ++   +P  + +              
Sbjct: 1105 AEQAEAVDP------AAIAAFFTADLGRRLCAAREVHREVPFSLGLKAAELYGGEGTESG 1158

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKT 920
              + + G  D +   + G+V I DYKT
Sbjct: 1159 RRVLVQGVIDCVFADECGYVMI-DYKT 1184


>gi|260776643|ref|ZP_05885538.1| exodeoxyribonuclease V beta chain [Vibrio coralliilyticus ATCC
            BAA-450]
 gi|260607866|gb|EEX34131.1| exodeoxyribonuclease V beta chain [Vibrio coralliilyticus ATCC
            BAA-450]
          Length = 1206

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 92/871 (10%), Positives = 220/871 (25%), Gaps = 92/871 (10%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVAN 251
             ++   L+    +    A +  +   L+      +     I     + P    + S +  
Sbjct: 344  KQQKQWLSFDDLLTQLSAAIDEDDSELLTQRIRSLYPVAMIDEFQDTDPLQYSIFSRIYL 403

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKS-----------TNITSSNTTYSTHPQYS---LA 297
                  +    D       +      +             + ++  + S           
Sbjct: 404  EHPQCGLFMIGDPKQAIYGFRGADIFTYIKARNQVSSHFTLGTNWRSSSDMVAAVNQVFE 463

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNI 352
                      +        S     R  +I     P  T  ++  +       E      
Sbjct: 464  TPSSPFVYDDDIPFIPVKSSPNADKRQWMIDGQRQPAMTYWLQEAEEKPLAKGEYHQAMA 523

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
            Q C  ++  I +  + E A       +          A++    +  R +K  L   GI 
Sbjct: 524  QACADEIHRILSAAQSERAFF--DDGKSQHAIQAGDIAVLVRTGSEGRMIKQALAEQGIA 581

Query: 413  -IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
             + +S    +  +  +  L  LL A+    +  A+   +   L                 
Sbjct: 582  SVYLSNRDSVFVSQVAEDLQRLLQAVLTPENDRALRASLASELFALDAGTLDKL------ 635

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                   N+    I + K                     R   E           +   +
Sbjct: 636  ---NNDENEWENAINEFKEYRRLWSQRGVLPMLRSVMSKRHIAERLLEEDNGERSLTDFM 692

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
                  +        +  +  W    ++  +N       ++  L  E     +       
Sbjct: 693  HIGELLQQASQELDSDHGLLRWLAQAISDARNGLGGSEEQIQRLESERNLVQIV-----T 747

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            I     ++ + +    + +     E          T+  +   ++ L   D   L     
Sbjct: 748  IHKSKGLEYDLVFLPFVFSYREASEAKYYDSASDKTILDITKQDASLQQADKERLAEDLR 807

Query: 652  GVWPKNTAK--NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI--YTRSLRENN 707
             ++   T      F+      +         +  +A  + + NG    I   T +L+++ 
Sbjct: 808  LIYVALTRAVYGCFVGAAPLRNGRSTKEPTGVHHSAMGYLLQNGEPGGIADLTAALQQHA 867

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                  +       +         +K+     +   ++D   +   Y          +  
Sbjct: 868  QELSCVQLADLPESVNEKLVTREAEKQALHANELQNEIDRNWRITSYS--GLVKQGASHH 925

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI------- 820
               + ++I  L  D                 F         GT  H +  E+        
Sbjct: 926  FDDAVTDILLLDVDSSDEQQEEEQLEPEKNIFTFPKGARP-GTFLHTLFEEVEFTESATS 984

Query: 821  ---------KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH--SFLE 869
                          +  P    +++Q++D+          + +  +    ++      L 
Sbjct: 985  DSNSEIIVNLMESEQLDPAWLPILQQLVDTVLATPLDGKQLKLNQKQPAQRLVEMEFLLP 1044

Query: 870  HEEKIQSSI-EKIFVNIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKT--- 920
             E     ++   I  + P       +G H     L GF D +   + G   + D+K+   
Sbjct: 1045 IEILTAPALNRVIQRHDPLSAKAGDLGFHSTQGMLKGFIDLVFEHQ-GKYYVLDWKSNYL 1103

Query: 921  --------GDNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQK 968
                    G+  K        D Q  + A AL     +++           ++Y+ L+  
Sbjct: 1104 GDNVADYHGEALKTAMVDHRYDLQYQIYALALHRFLRTRVPNYDYQTHFGGVYYLFLRGM 1163

Query: 969  FKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
                       + +      + L+++  ++ 
Sbjct: 1164 DGASEHGIFSARPTL-----EFLEDMDSLID 1189


>gi|312113012|ref|YP_004010608.1| double-strand break repair helicase AddA [Rhodomicrobium vannielii
            ATCC 17100]
 gi|311218141|gb|ADP69509.1| double-strand break repair helicase AddA [Rhodomicrobium vannielii
            ATCC 17100]
          Length = 1282

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 97/893 (10%), Positives = 212/893 (23%), Gaps = 147/893 (16%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAE--------HLMKGTKGPIIIAGSTG 237
                     +        A          +             + + G    +++  +  
Sbjct: 352  RLAAAIFDAYEAEKRARGAVDFDDLIEKTLALLHREDAAEWVLYQLDGRIDHVLVDEAQD 411

Query: 238  SIPATARLMSTV--------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            + P    +++ +        +       +    D       +     +      +     
Sbjct: 412  TSPEQWAIVAALTAEFFSGESARATMPTLFAVGDEKQSIYGFQGARPEFLAAFGAAYEQK 471

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT--------SDMRN 341
                    + +      R     L  V +        +S + +P            ++  
Sbjct: 472  ARATQMPFRTIGLDLSFRTLAPVLSAVDHVSAALGGGLSTAPMPHIANRDDDGGLVELWQ 531

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD------------ENKKKS 389
             +    +         D A   A      A  IA  +R  LD            +     
Sbjct: 532  PERGARQDKGDVWVPEDDAATSAKPAEALASRIATKVRGWLDGGAALGREGRPVDPGDII 591

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
             L+   + +A  ++  L R G+ +  +  + L   L    L +L +A+ +  D +A+A  
Sbjct: 592  ILLKKRQPMASLLQAALKREGVPVAGADRMSLVDDLAVMDLLALGDALLQPEDDLALAAA 651

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
            +K PL      + +  R      L A  G +   + +   +    R+A+ ++  H     
Sbjct: 652  LKSPLFGLSDDDLFALRNPREGSLWAALGARAEAEAVGRFAEAAARLASWRDLAHRLSPF 711

Query: 510  SRLSEEDKELAVLLVDHILQCITP--------------------LVTYKTNKNSTCGNLS 549
               ++          D                                  +  ST    S
Sbjct: 712  DFYAQVLDHPLPAASDSDDGRGGQADDPHIGGASVASFGEDTNHFRGVGGDDMSTGKIDS 771

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG-SCIKANAIEWIDI 608
            IS  T+            + R         +       FS + ET  +  + +  +++  
Sbjct: 772  ISLSTETRYASAAAHTPPDGRAAFGARLGPQCFEALDEFSNLAETFSAGGRGDLADFLVF 831

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            +         +        + I+    ++ L    +IL         +         R  
Sbjct: 832  VRHGAAEVKRETDQATRE-VRIMTVHGAKGLEAPIVILADACGARAGRQPPILLLEDRAD 890

Query: 669  QSDLNLKT-----------------AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
               + + T                 AE    ++     +A          +         
Sbjct: 891  GVRVPVWTIKGAGALPPVADQKEELAEAARRESGRLLYVAMTRARDRLYIAGSHTGDTLP 950

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQ-------------------------CYLDWTR--- 743
               W   +           +   G+                            DW     
Sbjct: 951  EGCWFDTVKSALEPHAAGGVDDHGRLFWRLGSELHGVSGAGGNHGEPMPVALPDWAGKSA 1010

Query: 744  -------KLDYTTKQPHY---------------KRPKPFPPLEAQPRTYSFSEIKQLIND 781
                    L  +   P                 +R     P +A   +   + +      
Sbjct: 1011 PAGNSRVLLSASALVPPALIRNRFDAETLTDIQRRAASGSPNDALKSSREPASLNAHQPP 1070

Query: 782  PYAVYARRILKLDFIPHFKKDPD---------RTDRGTLFHNIITELIKKRINKNTPEIN 832
              A + R           +  P+             G   H ++  L          E  
Sbjct: 1071 VDAFFLRAPALETASDLDEWGPNPHDGVARKVAQQTGIFIHRLLEILPG-LPEGRRGEAA 1129

Query: 833  HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
             L             +    + + R L               +   +++       +A+E
Sbjct: 1130 QLAAAAFREALPGNRIEAAFESVERLLATPHL----------RPGDKRVLSEAGIAIALE 1179

Query: 893  SIGIH-LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
            S     + G  DRI +   G +++ DYK+G     +    +   QL+    AL
Sbjct: 1180 SNERAAILGQCDRISIGTDG-IELLDYKSGTLSDGDPLPAVYVAQLAAYRLAL 1231


>gi|40789159|emb|CAE84140.1| putative helicase [Pseudomonas fluorescens]
          Length = 1121

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 81/802 (10%), Positives = 194/802 (24%), Gaps = 119/802 (14%)

Query: 160  ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL----VELNASSPVGYQIALM 215
            +   +    L  L   +Y        +   +  +Y    L       N+          +
Sbjct: 342  QEYAQALATLATLPELQYPARSAKMVEHFTVILRYLLANLTLAMEGTNSLDFPEIAQRAI 401

Query: 216  RAE-------AEHLMKGTKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCH 265
            +A           L +     I++     +  A   L++ +       +   +    D  
Sbjct: 402  QALGAGETVGDALLEEDRILHIMVDEFQDTNQAQYDLLNLLVENWEPADNRSIAYVGDGF 461

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                ++                     Q  + +L          V+       E++  S 
Sbjct: 462  QSIYLFRGADLNLFTSV-VEAKAFGPKQMDILRLTVNFRSLPGVVEWNNATYAEVFKDSA 520

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN-EREEAISIAIALRMSL-D 383
                  +                    +K    V++      +  EA  +   ++ +L  
Sbjct: 521  YEFVPSVAF------------------RKGDGGVSVHPVATGQIGEAEEVTKVVQEALTK 562

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
            +  K  A++   R+  + +   L   GI +      P+      S + SL+ +++   D 
Sbjct: 563  DPSKSIAILVRGRSHLKHILPMLKEAGIEVRGKDIDPIGEAAPVSEVISLIRSLWHSADR 622

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
             +   L++       + +       + +   ALR                          
Sbjct: 623  ASWIALLRAAFVGLSWADCLTVARGHNVIENALRDEGVQ--------------------- 661

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                                     + +T ++      +    +   S+      +    
Sbjct: 662  --------------------AQLSSEGLTRVLRLLEVLDGVKRSSRGSELGWAVKSVWIA 701

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
            +          +   E    L +  ++     S    +   +   I +            
Sbjct: 702  LGGPATVNTGEMDDVETIFKLLTSHTE-----SGDLIDPQAFFRAIDKAYAS-------P 749

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLN-------EGVWPKNTAKNPFLSRVMQSDLNLKT 676
            K+  + ++    S+ L +D +++ GLN         ++        F       DL+  T
Sbjct: 750  KAGAVTVMTCHGSKGLEYDIVLIPGLNKGGAKDDAPLFYFRQMDGVFSVVPNLGDLDTTT 809

Query: 677  AEKYIGQAAHDFEM------ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
             E  + +                  ++  TR+  + ++     R+      +        
Sbjct: 810  PESRLFKFVGRMVRKDISDEVCRAAYVGTTRAKEDCHLFVCVDRFPAAEGEVQKEKEIKP 869

Query: 731  LKKRGQC--YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS-----FSEIKQLINDPY 783
                     +     ++                         S        +        
Sbjct: 870  AAGSLAECLWSAIGAQVKAVAPAFPIVAVTDSGVPSKARLAPSYKVELPKTVFVPAASND 929

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
             V     L  +       D      G ++H  + ++ K+ I            Q I S  
Sbjct: 930  QVPTENELNDELREEEGSDYRAKTIGIVYHWFVEQIGKQGIELWDEARVRTKAQAIASML 989

Query: 844  EKENLPPHIDIIWRHLFHKISHSFL-----EHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
             +E  P            ++  + +     +   K +         +            +
Sbjct: 990  RREGFPAAEVPQAVARILRLLSNTVNSIHGQWILKKRPG---SGHEVQVSAYRNGR--WV 1044

Query: 899  TGFADRIDLLKSGFVDITDYKT 920
              F DR      G   I+DYKT
Sbjct: 1045 HRFLDRPFED-DGVYWISDYKT 1065


>gi|218533283|ref|YP_002424098.1| hypothetical protein Mchl_5413 [Methylobacterium chloromethanicum
           CM4]
 gi|218525586|gb|ACK86170.1| conserved hypothetical protein [Methylobacterium chloromethanicum
           CM4]
          Length = 886

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 72/664 (10%), Positives = 162/664 (24%), Gaps = 74/664 (11%)

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
           + +   +  +  +++             + +I   +     VA+  A   R E +     
Sbjct: 164 DTVACLARHVPVTWVAGPRVVPDWVPAADIRIIASEAEVPAVAVCSAATPRHEVLEALRW 223

Query: 378 LRMSLD----ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            R  +     +    +            V    +   +++    G+P +         +L
Sbjct: 224 ARELMASGQAQPSDIAVTACRTEEYDDAVLALRSEANLDVRFVHGVPATGVREGQAAAAL 283

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            + + +      +                   R    L                +     
Sbjct: 284 ADILVRGLSQDGV------------------RRLAALLRGGPGPFASLPERWTRILPREA 325

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                      +   ++     D++    L + +                    LS+  W
Sbjct: 326 PLADLAAWERLLSGARAEALPTDRDHVATLREIVGLLARGPTVAAEAGERFLHGLSLRIW 385

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            +  +     V      +L      +    +    +  +          +         +
Sbjct: 386 RRALIEGAPAVIDLTLDRLRIDEGADACACVVWAPASALAAAPRRFVRLL--------GL 437

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                     +   L         L  F   +    +       TA+   LSR  +    
Sbjct: 438 SSRGWPQVSSEDRLLSDHLVPSRELDPFPRPLSDRTDFHAILATTAQAVVLSRPRRGPDG 497

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
                  + +                 R+    +    A R + R       +F   L+ 
Sbjct: 498 RLLGRSPLLRDY-------AAGEAHLARNRIPAHAVGEADRLMAR-----PEEFLTTLQA 545

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
           R              T      RP     L    RT+S   +++L+ DP        L L
Sbjct: 546 RSASRCWRAWGKTELTAHDGLVRPDHPVVLSILERTHSARSLRKLLRDPLGFVWTYGLGL 605

Query: 794 DFIPHFKKDP--DRTDRGTLFHNIITELIKKRI---------NKNTPEINHLMKQIIDSH 842
           +      +    D    G L H ++   +             ++            +   
Sbjct: 606 EATAPAAEPLTLDHQAFGNLLHEVLERTVADLEAKGGFAPSTDEGKRRALATAIGTVAEI 665

Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAK------------- 888
           +E+E+  P   +  R L    + +        +  + +  +V +P               
Sbjct: 666 WEREHPIPPRTVWSRTLDQTAALALAALTHPDEPLAGQGSWVEVPFGGQPPKREGYPLPW 725

Query: 889 -----MAIESIGIHLTGFADRIDLLKSG-FVDITDYKTGDNPKKETA-QKLIDPQLSLEA 941
                + I      ++G+ DR+DL +      + DYKTG   +         + Q  L  
Sbjct: 726 DHAAAVTIPGTDFRISGYIDRLDLSRDRTRARVRDYKTGKPCEMGAVLDGGRELQRCLYG 785

Query: 942 AALK 945
            A +
Sbjct: 786 YATR 789


>gi|317488291|ref|ZP_07946856.1| alanyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|316912608|gb|EFV34152.1| alanyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
          Length = 274

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 60/272 (22%), Gaps = 64/272 (23%)

Query: 808  RGTLFHNIITELIKKRINKN--------TPEINHLMKQIIDSHFE----------KENLP 849
             G+  HN++    +               PE   L+ +  D H E               
Sbjct: 1    MGSFSHNVLRSFYEHFREAGHAKVDSATLPEARALLGETFDRHLESQRNLKRSVNPLIPR 60

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM--AIESIGIHLTGFADRIDL 907
               +        K    FL+ E  +    E +               G  L G  DRID+
Sbjct: 61   TAFERAETADLRKRLVRFLDREALLLPGFEPVRFEFDFGSSEPFPYAGCLLRGSVDRIDV 120

Query: 908  LKSGFVDITDYKTG--------DNPKKETAQKLIDP---QLSLEAAALKAGSFSQIDCRK 956
              +G   + DYK                 A   + P   Q  + A   +      +    
Sbjct: 121  NGAGQAVVIDYKGSLNGDYALDSASPAAQAGGAVLPHKVQTLMYAQVARK-----VLGLD 175

Query: 957  VANLFYIRLKQKFK-------------------------IDCITNDKKKYSADELSEKSL 991
            V    Y+   +  +                                    S  EL +   
Sbjct: 176  VVGALYVSYGRDRRVSGAFDRTVVGERDVPGIDVERCGVPGPAGEALGVSSFGELVDAVE 235

Query: 992  KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
              +   V  L +G                   
Sbjct: 236  DRIARAVRTLADGCIGPDPR---GGDPCGYCP 264


>gi|312879906|ref|ZP_07739706.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
 gi|310783197|gb|EFQ23595.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
          Length = 659

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 60/583 (10%), Positives = 138/583 (23%), Gaps = 79/583 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTA--DLLLSYNLNPP 102
             +     T +A  E+R    ++ G+++  L  + +              +L       P
Sbjct: 58  GRILAVTFTNKAAGEMRERVEKLLGERARGL-RVSTFHSYGLHFLRRHEGILQEMGYGRP 116

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +    R  +   L+     +     K   P   L    +  +   L+    ++      E
Sbjct: 117 LLVFDRSDQ-KGLVKRLLAEKNLDEKRFDPGWLLETFSTAKDERDLSSGTVNL------E 169

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RA 217
                                    L      + +R+ E  A          +       
Sbjct: 170 GM-----------------------LGQLYLLYEQRMKEQGALDFDDLVTLPLLLLSRDE 206

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           E           +++            L+  + +   G  +L   D       W      
Sbjct: 207 ELRRREASGLDWVLVDEYQDVNRTQYLLLRRLTS--EGQKLLVVGDPDQAIYGWRGADVS 264

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                  +              +  L+        +   +N +  R+             
Sbjct: 265 MILNFERDFPG---------ARVTVLEQNYRSSGHILEGANGVIARN------------- 302

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITAD 395
               +D  E ++         + ++ A +++EEA ++A  +   L +  +    A++   
Sbjct: 303 ----SDRREKRLWTAAHRGERIQVLRARSDQEEASALAERVEGLLRDGYRYGDMAVLYRM 358

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-- 453
             L+R  + +    GI   +  G+          +  +L    +  D  ++  +   P  
Sbjct: 359 NALSRTYEQKFLEEGIPYRVVRGVAFYERREVKDVLGMLRLAIQPRDRGSLERVGNLPPR 418

Query: 454 ---------LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
                    L  +        R+                    L+ L    +     +  
Sbjct: 419 GLGKKGLEVLGDWLQERTEDPRSVWETLRDQGVPAVKGKAREGLRGLAEGMLGVLDRSDR 478

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                  L E+      L  D   +            +       +              
Sbjct: 479 AREALVHLWEDYGYGTFLAADDPDRFEERRENVFELLSVLPEEGDVEQVLAEVALFTDAE 538

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             +E     +L      K L      ++     I  N     D
Sbjct: 539 TTEEDVDRVSLLTLHAAKGLEFPVVFLVGMEEGIFPNGRCLGD 581


>gi|229821506|ref|YP_002883032.1| ATP-dependent DNA helicase PcrA [Beutenbergia cavernae DSM 12333]
 gi|229567419|gb|ACQ81270.1| ATP-dependent DNA helicase PcrA [Beutenbergia cavernae DSM 12333]
          Length = 829

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 84/704 (11%), Positives = 193/704 (27%), Gaps = 103/704 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD-----VVEEKFTADLLLSYNL 99
             +     T +A  E+R     + G  +  +  + +        +  E     L  S+++
Sbjct: 107 GEILAITFTNKAAAEMRERVEALVGPPARAM-WVSTFHSACVRILRREHAVLGLRSSFSI 165

Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
                ++       RL+ +   +L    K   P++ +                      +
Sbjct: 166 YDAADSL-------RLMTLVCRELGLDPKRYPPKAFIHRVS-----------------DL 201

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
           + E    +   A              + L  A + + +RL + NA       +  +    
Sbjct: 202 KNELVDPDAFAAGVGGSNPYE-----ENLAEAYRMYAQRLRQANALDFDDLIMTTVNLLQ 256

Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
                    +     +++     +  A   L+  +A     A    G D  +        
Sbjct: 257 AFPAVAEHYRRRFRHVLVDEYQDTNHAQYVLVRELAGVATQAYD-DGGDSDLDRGP---A 312

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
                 +T       +   +  A + + L+ + +        +  +              
Sbjct: 313 PVLPAELTVVGDADQSIYAFRGATIRNILEFEADYP---DATTILLEQNYRSTQNILSAA 369

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSAL 391
           +    RN D     +         +    AD++ EEA  +A  +    D +       A+
Sbjct: 370 NAVIARNPDRKAKNLWTAAGAGPKIIGYVADSDHEEARFVAEEIDRLGDASGVRPGDVAV 429

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
                  +R ++  L R GI   +  G             + L AI   +D + +  ++ 
Sbjct: 430 FYRTNAQSRALEEVLIRAGIPYKVVGGTRFYERREVKDAIAYLRAIANPDDAVNVRRILN 489

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P    G   + +  A    E ++                     A  +    VP   +R
Sbjct: 490 VPKRGLGERSEAVIAAYAERERISF-------------------GAALEAAADVPGLATR 530

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                 E A LL D                        +      +    +    D+ + 
Sbjct: 531 ALGIVTEFARLLADLRAMAAGG----------ATPAEVLDSALDRSGYLAELRASDDPQD 580

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              +    E   +++ FS+    G     +  ++++ +  + D + +         + ++
Sbjct: 581 ATRVENLAELHAVAAEFSEADPDG-----DLGDFLERVALVADTDQLPDDDASGGVVTLM 635

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  + + GL +G +P   +              L    +   +    +   
Sbjct: 636 TVHTAKGLEFPVVFVTGLEDGTFPHARS--------------LADPAELSEERRLAYVAL 681

Query: 692 NGTRH-LIYTRSLRENN----IPTIASRWLQRLLVLGGTDFFDN 730
              R  L  +R+             ASR+L  +           
Sbjct: 682 TRARERLYISRAAVRTAFGVPHELPASRFLDDIPDELLDWRRAE 725


>gi|256828187|ref|YP_003156915.1| exodeoxyribonuclease V subunit beta [Desulfomicrobium baculatum DSM
            4028]
 gi|256577363|gb|ACU88499.1| exodeoxyribonuclease V, beta subunit [Desulfomicrobium baculatum DSM
            4028]
          Length = 1168

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 109/1028 (10%), Positives = 231/1028 (22%), Gaps = 161/1028 (15%)

Query: 58   QELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL 117
            + +R     +    S + P +++L     + F A       L+  +   +  L   RL  
Sbjct: 209  RAVREACERLKASWSVMEPEVRTLLLARADNFNARQFSPQKLDQRLKATRDFLNDPRLDA 268

Query: 118  IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY 177
              + K    +   Y +       +             + D I+    + E L  L     
Sbjct: 269  KEQLKALGELTSTYVQGMTKKAFTAPEH--------RLFDEIQNILDQVEALRHLLGPFV 320

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE----HLMKGTKGPIIIA 233
                     FL   +    E     N          +  A A        +      +I 
Sbjct: 321  VHLRHA---FLSGVTARLDELKRRRNVLGFDDLLRNMHAALASPELVAAARTQYRAALID 377

Query: 234  GSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
                +      +  T+    +G   +    D       +       T +T++++      
Sbjct: 378  EFQDTDGLQYDIFRTLFATGDGENSLFLIGDPKQAIYSFRGAD-LHTYLTAADSCERGMT 436

Query: 293  QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI--- 349
                 +    L      +    +         +       P    D    D         
Sbjct: 437  LGVNYRSTPELIAAVNRLFFRPDNPRPFLDPKIAYQPVSAPDKERDRFREDGQTPAPMVL 496

Query: 350  PNIQKCFSDVALIEADNE--REEAISIAIALRMSLDENKK---------KSALITADRNL 398
              ++     +A         R  A  I+  LR + +   +           A++      
Sbjct: 497  WQVKSADKPLAKGALAPRICRAVAAEISRLLRGAAEGRIRIGDAPLLPGDIAVLVETHAQ 556

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
               +   L    I   ++    +  +  +S L S+L  + +     A+ T +  P+    
Sbjct: 557  GEAIHQALGALRIPSVVTHTSSVFASPEASELLSVLRGMAECQRPAALRTALAAPMIGLT 616

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
             P+  L                   D   L+                         E   
Sbjct: 617  APDLAL----------------IDEDGEKLEEWF----------------------ERFL 638

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                L D     +  +      ++     +S+ D  +     L                 
Sbjct: 639  ACRELWDR-RGVMAAVRRLFAGQDVRKRLVSLPDGERRMTNVLHC--------------- 682

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                 L  L S+  E+G+ + A    +   +      E+          + I+   +S+ 
Sbjct: 683  -----LELLHSRERESGAAMHALLTWFARRLGTEGTEESQLRLDTDRDAVQIVTIHKSKG 737

Query: 639  LNFDTLILG----GLNEGVWPKNTAKNPFL----SRVMQSDLNLKTAEKYIGQAAHDFEM 690
            L +  +                   ++  L    +  +   +    +E    +    +  
Sbjct: 738  LQYPVVFCPFIFGRARCPEDRALVHEDGLLLDLGTEELPRRIGQALSEAQAERVRLLYVA 797

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL---DY 747
                +   Y    R N   T  + WL                          R L   D 
Sbjct: 798  LTRAKCRCYAIWGRINEAETSGAAWLFHGHRADENSTLSWETVDEDMVCADLRVLANDDI 857

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY----------AVYARRILKLDFIP 797
               +     PK  PP              +++   +           +       LD + 
Sbjct: 858  EVAELPDAEPKQGPPQFTHAPDLRCRNWDRVLGSGFGLASFTGLTRGMEHGARPGLDEVD 917

Query: 798  HFKKDPDRTDRGTL-FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
               +  D                + +   +        +   +          P      
Sbjct: 918  ASGQAADEWSMANFPCGAAAGSCLHRIFERIDFADEITIPAAVTEALAAYGFDPAWHQTV 977

Query: 857  RHLFHKISHS---------------------------------FLEHEEKIQSSIEKIFV 883
              +  ++ H+                                            +     
Sbjct: 978  HDMVKRVLHADLGEGLQLGGIEQKDKLVEMEFLFPLRPVTRETLAAVYRDSAGLLPPDLP 1037

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNP--------KKETAQKL 932
                 +  E     +TGF D +         + D+K+   G  P            A   
Sbjct: 1038 ERMGNLRFEPRRGFMTGFMDLVVRSGR-KFYLLDWKSNWLGPTPGHYTPDALHAAMAGSH 1096

Query: 933  IDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
               Q  L   ALK     +       ++   + Y+ L+                     +
Sbjct: 1097 YFLQYHLYCLALKRHLALRKPGFDYEKEFGGVRYVFLRGIDPQTPGQGVHANRPDPRFLD 1156

Query: 989  KSLKNLIE 996
               K LI+
Sbjct: 1157 ALDKALID 1164


>gi|326771959|ref|ZP_08231244.1| ATP-dependent DNA helicase PcrA [Actinomyces viscosus C505]
 gi|326638092|gb|EGE38993.1| ATP-dependent DNA helicase PcrA [Actinomyces viscosus C505]
          Length = 957

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 78/706 (11%), Positives = 182/706 (25%), Gaps = 95/706 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD-----VVEEKFTADLLLSYNL 99
             +     T +A  E+R     + G     +  + +        +  E   A L  ++++
Sbjct: 157 GEILAITFTNKAAAEMRERVTALVGPAGERM-WVSTFHSACVRILRREHEAAGLRSTFSI 215

Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
                +        RLI +   +L    K   P++              A  ++D+ + +
Sbjct: 216 YDAADS-------TRLITLIVRELGIDPKRFTPKT-------------FAHRISDLKNEL 255

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM---- 215
                                       L    + + +RL   NA       +  +    
Sbjct: 256 ----ITPAQFAERAVTSNP-----LERHLAEVYRAYAQRLSAANALDFDDIIMRTVSLLQ 306

Query: 216 -RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA---------IVLPGLDCH 265
            R     + +     I++     +  A   L+  +   P  +          +    D  
Sbjct: 307 TRPAVAEMYRRRFCHILVDEYQDTNHAQYVLVRELVGGPGTSGAGSALPPGELTVVGDSD 366

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +   T ++            +P      L       +  +     V +   GR  
Sbjct: 367 QSIYAFRGATIRNIEEFE-----EDYPSARTILLEQNYRSTQNILSAANAVISRNSGRR- 420

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSL 382
                               E  +       + +    AD+E +EA  I+     L    
Sbjct: 421 --------------------EKNLWTAAGDGAPITGYVADSEHDEARWISQEVDRLADEH 460

Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               +  A+       +R ++    R G    +  G             + L A+   +D
Sbjct: 461 GVRPRDVAVFYRTNAQSRALEEAFMRAGQPYKVIGGTRFYDRREIKDAIAYLRAVDNPDD 520

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            + +  ++  P  K G  +K            A+   +   D                + 
Sbjct: 521 DVNLRRILNVP--KRGLGDKAEGALAEHAARYAVSFGQAVADAAGAPREAQTDGTENTDG 578

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS-ISDWTKLTVTCL 561
                  +    E + L     + +      L T +    +  G    +      +    
Sbjct: 579 QDTSTTGAGEPPEVEGLTTRARNQVRGFHELLTTLRHMVTAGDGVADVLDSALDASGYLA 638

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID-----GE 616
           +    D+ +    +    E  +++S F      G+         +   +  +       +
Sbjct: 639 ELRASDDPQDATRVENLAELHSVASDFQAANPDGTLADFLERVSLVADSDQLPPSADLED 698

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
               + E+   + ++    ++ L F  + + G+ +G +P   +         +  L    
Sbjct: 699 EDARQAEEQGQITLMTVHTAKGLEFPVVFVTGMEDGTFPHARSLTEETELAEERRLAYVA 758

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
             +   +                 RS         ASR+L  +   
Sbjct: 759 LTRARERLYLTRAA---------VRSAWGAANAMPASRFLDDVPDE 795


>gi|282721349|gb|ADA83798.1| gp76 [Mycobacterium phage SkiPole]
          Length = 267

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 81/291 (27%), Gaps = 57/291 (19%)

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                + +  S S++ Q    P++    R  ++   P          +G+  H +  + + 
Sbjct: 3    EYRYEKKPRSVSQLSQFDKCPFSWKLARHERVWRRPAAW-----LQQGSAVHAVAEKYML 57

Query: 822  KRINKNT-----------PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI------- 863
             ++  +             E    + +  +                     +        
Sbjct: 58   SKLAGSPLTREECYEIFKAEYADGINEATEETPNLGWWFASGPYRGADDIERRWGIGLQQ 117

Query: 864  SHSFLEH-------EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
                L+        E           + +  +  ++  GI + G+ D + +L  G V + 
Sbjct: 118  VDKTLDWIDNHQSLEVWHTPDGTP-GIELAIEFELD--GIEIRGYIDAVLVL-DGEVLVV 173

Query: 917  DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
            D+KTG  P         D QL++ A AL      Q+   ++    Y   K          
Sbjct: 174  DWKTGLKP-------GDDFQLAVYALAL-----KQLYGVEITRGVYFMAKTGKPTYPYDL 221

Query: 977  DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI---QSEY 1024
                       EK      E+   L+ G+  F      S          EY
Sbjct: 222  TDWTR------EKVSARFHEMERKLEAGD--FTPKPGASCARCDVALSCEY 264


>gi|326796040|ref|YP_004313860.1| exodeoxyribonuclease V, subunit gamma [Marinomonas mediterranea
           MMB-1]
 gi|326546804|gb|ADZ92024.1| exodeoxyribonuclease V, gamma subunit [Marinomonas mediterranea
           MMB-1]
          Length = 1155

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 105/914 (11%), Positives = 216/914 (23%), Gaps = 149/914 (16%)

Query: 49  IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
           I V T    Q L     E+    + +      L      +     L         +    
Sbjct: 35  ILVQTPGMAQWLNIRLAELMTVSAGVD---FPLPSSFVWRVFQSALDDIPAQSAFNKPYL 91

Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-- 166
              L R++  +     D        + L+   S      L   +ADI D        W  
Sbjct: 92  TWRLMRILERFE----DNDAFSDLSNYLAEDGSQVRRYQLCATVADIYDQYLVYRPDWIS 147

Query: 167 -------EDLHALKNEKY-GMWWLLAADFLKIASKYWTERLVELNASS-PVGYQIALMRA 217
                  + L     EK+    W             W E + +++     + ++  L+ A
Sbjct: 148 AWESNQEDSLPLKLREKFEAQPWQAIL---------WRELMADISHDGMSLYHRANLLEA 198

Query: 218 EAEHLMKGT-----KGPIIIAGSTGSIPATARLMSTVANHP--NGAIVLPGLDCHIPTAI 270
            A+              I I G +   P T   +  +AN       + L          +
Sbjct: 199 LADMTKSQPRPSSVPERIFIFGVSSLPPNTLNALQVLANSGWIEMHLFLQNPCRFYWGDV 258

Query: 271 ----WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE------- 319
               +     K   +     T   H       L  +  + R+ + +L +V++        
Sbjct: 259 VDKHFVGRAIKRQTLKPGMHTNMLHLDA-NPLLASWGRLGRDYIAQLQDVADAELEIFDD 317

Query: 320 ------------MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                       +  R      +       + R           +      V +    + 
Sbjct: 318 YLLDGLDENQVSLLHRVQQDVFTMENHGAKEERELVATAEYRHTVAASDRSVQVHVCHSP 377

Query: 368 REEAISIAIALRMSLDENKK----KSALITADRNLARRVKLEL--------TRFGINIDI 415
             E   +   L    + N         ++  D N        +                 
Sbjct: 378 LREVEVLHDQLLALFETNPDLTPKDVIVMLPDVNRYSPYVKAVFSQKVFQNAGGHRASGS 437

Query: 416 SAGIPL-----------------STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           S   P                             LL           + ++++ P     
Sbjct: 438 SIAQPQNRIGQSIPFVLIDQSGGLENPVVDAFLYLLGLGDSRFTLSELISILEVPAVMAK 497

Query: 459 FP----EKYLSRAKNALELVALRGNKNSYDIMDL-KSLVLDRIATQKNNTHVPHWQSRLS 513
           F     E    R       V     + +    DL K  +       K             
Sbjct: 498 FDLTVEELERVRQWATEVGVRWGLTEETATQHDLPKQTIHTWHHGLKRMLLGYSVGHDHI 557

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            +D      +          L  +     ++  + S S   +  ++ L  +  D      
Sbjct: 558 WQDILSYGDIEGLEASIAGKLADFLDKLQASATHFSQSQSPEGWISTLNALLADYFELTD 617

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID--GETVKPKIEKSSTLFIL 631
              F        +   +  E       + IE+  I   L     E+       +  +   
Sbjct: 618 EDPFRSLFTRHLNTLQE--EWQGANFHDDIEFPVIREVLAPRLQESSGSHRFLAGRVNFC 675

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
             +  R + F  + + G+NEG +P+N     F   V       ++  +         E  
Sbjct: 676 TLMPMRSVPFKVICVLGMNEGDYPRNAVPMGFDLMVGDYRSGDRSPREDDKY--LFLEAL 733

Query: 692 NGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
              R     +   R   +N     S  L  L+   G        +  +  +     + + 
Sbjct: 734 MSARDTFYLSYVGRSVQDNSEKNPSIILSELVEYIGQSCTLERDRLKEPDVSTQNMMSHV 793

Query: 749 TKQPHYKR-------------------------------------------PKPFPPLEA 765
             +   +                                             +P    + 
Sbjct: 794 VTEHPLQPFNADYYSASPLLTDNESLFSYNEQWLPLFYLENVYGEKFDSFSFEPLTDYDG 853

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKL----DFIPHFKKDPDRTDRGTLFHNIITELIK 821
                   E+++    P   + ++ L+     +     + +P     G   + I  EL++
Sbjct: 854 DLSELDVDELRRFFRHPARYFTQKRLRAYLSFNEEDELEDEPFALT-GLSGYQIKVELLE 912

Query: 822 KRINKNTPEINHLM 835
             +     E+   +
Sbjct: 913 AMLKDEEAELIARL 926


>gi|254245831|ref|ZP_04939152.1| Exonuclease V gamma subunit [Burkholderia cenocepacia PC184]
 gi|124870607|gb|EAY62323.1| Exonuclease V gamma subunit [Burkholderia cenocepacia PC184]
          Length = 1120

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 86/883 (9%), Positives = 197/883 (22%), Gaps = 54/883 (6%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  ALL        R  P  P       + VP+    + L  +     G  + +   
Sbjct: 18  HETLADALLEDLAAFPARNGPWAPQ-----QVIVPSAALRRRLELDIAARNGVCANVEFT 72

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             +       ++    +      P  S       + R   ++     D      P     
Sbjct: 73  YLA-------QWLWAQIGRVLTVPARSPFAPDRLVWRCYRLFAQAAGDAPWLASPRLAAY 125

Query: 138 LPISPAN-AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAADFLKI 190
           L  S       LA  +A ++D   T   +W                       A D  + 
Sbjct: 126 LSASDDAMRYELAHRVAAVLDHYLTYRPEWLAAWQAGESVLAGDAAPRGISDAARDDERW 185

Query: 191 ASKYWTERLVEL-NASSPVGYQIALMRAEAEH---LMKGTKGPIIIAGSTGSIPATARLM 246
            +  W   L EL ++ +P  ++  +     +            + +       P    L+
Sbjct: 186 QAALWRALLAELSDSGTPPAHRFLVEARHLDADAVARADWPESVSVFALPTMPPLHVALL 245

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
             ++   +  +            I      ++ +               LA+       +
Sbjct: 246 RELSRWIDVRVYALNPCREFWFDIVTAAHAEALDAAGRRDYQEVGHP-LLAEWGRQTQAQ 304

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
              ++ L   +        V + +            ++              + +    +
Sbjct: 305 LHMLRELTESAASGDASRFVENPAPTWLARVQNAILELQPEAEIGDTPVERGIEVHVCHS 364

Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI----------NIDIS 416
              +   +   L    D +                    L                  I 
Sbjct: 365 LARQLEVLHDRLLAWFDADASLQPSDVLVAVADLAAAGPLIDAVFGTAGAGGARVPYRIP 424

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
              P      + +L   L    +      +   ++       +     +       L A 
Sbjct: 425 GLPPSQANPVARLLLDWLALPERQVGAPELVEWLRVDAVAARYDIDAAALETVQTWLAAA 484

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL---------VDHI 527
              +    +    + V     T  +          + E    +   L          + +
Sbjct: 485 GARRGLSPLASDDAAVPAPRHTFSDALARLFLGYAMPEGAAPIGAWLPIEAATGSEAELL 544

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            +                 + +   W++L    L             L    +   L ++
Sbjct: 545 GRLARFTDDLDGFARRLAESHTPRGWSELFADTLARFFDSGAAYADALAGVRD--ALDAM 602

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
            + + E        A      +   +D             +        R L +  + L 
Sbjct: 603 LAAMTEGAPDEALPAAVVRAGLAAALDD--PARGGVPWGGVTFSSLTSLRGLPYRVVCLL 660

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLN-LKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
           G+++GV P     + F    +   L   +  +            A     + YT     +
Sbjct: 661 GMDDGVLPSLARADEFDLMAVLPKLGDRQRRDDERNLFLDLLLAARDRLLIAYTGRSIRD 720

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
           N P   +  +  LL     D    +        D            H  +P      +  
Sbjct: 721 NAPLPPAALVDELL-----DHLAIVTAGPGAAPDAVDAARRAFIVEHPLQPFAAAYFQLG 775

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
               S+   +  +    A  A R  +    P F +         +  +      +     
Sbjct: 776 SELVSYDAERATLASLLAAEASRG-QPREQPFFAQPLPAEPVEPVAFSEFERFWRHPARA 834

Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
                  ++     +                 L  ++    +E
Sbjct: 835 LLRGRLGIVLTDAQAELLDTEPFALDFAGSDALAERVLPLLIE 877


>gi|319942765|ref|ZP_08017069.1| superfamily I DNA and RNA helicase [Sutterella wadsworthensis
           3_1_45B]
 gi|319803645|gb|EFW00595.1| superfamily I DNA and RNA helicase [Sutterella wadsworthensis
           3_1_45B]
          Length = 816

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/682 (8%), Positives = 153/682 (22%), Gaps = 134/682 (19%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK--SLGDVVEEKFTADLLLSYNLNPP 102
             +     T +A    +     + G     L  +   +   +           +      
Sbjct: 54  GEILAVTFTNKAA---KEMLTRLEGMIPYDLRRMWVGTFHGLCNRILRIHAQEAG----- 105

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +    ++L+    + + +  +     D+    P  +               + I+  +  
Sbjct: 106 LPKTFQILDSGDQLSLVKRLMKAANIDVEKTDPKQVV--------------NFINWCKEN 151

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
             +   + A                L    + +     +          +        + 
Sbjct: 152 GLRSSGVSAKDASDLR---------LG-LYQAYERECQKQGVVDFAELLLRCYELLTRND 201

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG------AIVLPGLDCHIPTAIW 271
           +     +     I++     +     R +  +A    G        V    D       +
Sbjct: 202 LVRAHYQKRFRHILVDEFQDTNVLQYRWLKILAGEKLGPNGTSLNAVFAVGDDDQSIYAF 261

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                 +      +                 L+      K + + +N +   +       
Sbjct: 262 RGANIGNMADFLKDFHVEKPI---------KLEQNYRSTKTVLDAANALIANN------- 305

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS-- 389
                        L   +       + + + E ++E +EA  +  ++R +       +  
Sbjct: 306 ----------DGRLGKNLWTSGSQGAKILVKELESEMDEAAWVVDSIRRAQRLTGGDASW 355

Query: 390 ---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              A++      +R ++ ELT  G+   I  G+          L   L  I    D  + 
Sbjct: 356 RQFAILYRTNAQSRALEAELTARGVPYRIYGGLRFFERAEVKNLLGYLRMITNPWDDTSF 415

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
             +V  P                                         R    K    + 
Sbjct: 416 LRVVNFP----------------------------------------TRGIGAKTIETLQ 435

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC--LQNV 564
                  +      + + D +   +            T  N+++ D     +    L+  
Sbjct: 436 ESARASGQSLWATLIQMGDQLSGRLAAFRDLIFTLRETAQNMTLPDAVAHVIKASGLEAC 495

Query: 565 CLDEHRKLPNLWF-------EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              +      L          E       L   ++                +T+      
Sbjct: 496 YEKDKDGPDRLENMKEVITAAEGWFKNERLPEDLLAFSPANDEVPTPMEGFLTQATLEAG 555

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            K + +  + + ++    ++ L F  + + G  E           F        ++    
Sbjct: 556 DKSEGQNVNAVQLMTVHSAKGLEFPWVFIVGAEE---------GIFPHFSAVKTVSEGGQ 606

Query: 678 EKYIGQAAHDFEMANGTRHLIY 699
                +    +      +  + 
Sbjct: 607 GGLEEERRLMYVAITRAKERLV 628


>gi|222055070|ref|YP_002537432.1| UvrD/REP helicase [Geobacter sp. FRC-32]
 gi|221564359|gb|ACM20331.1| UvrD/REP helicase [Geobacter sp. FRC-32]
          Length = 678

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 79/691 (11%), Positives = 183/691 (26%), Gaps = 109/691 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPV 103
           A++     T +A +E+R     + G+ +    II +   +       D+  L Y  N  +
Sbjct: 52  ANILAVTFTNKAAKEMRERVDGLVGRAACKGLIISTFHSLGVRILRRDIERLGYKKNFSI 111

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            +    + L + I+  R    D  K         +  +    I   + +    D      
Sbjct: 112 YSTTDQIGLIKQIM--REVNIDGKKFDGDTIIWKISAAKNKLITPDRYVPRFGDEY---- 165

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                   L   +    +  A                  +    +     L++   E L 
Sbjct: 166 -------ELLAAEVYPRYQSALKAFNAI-----------DFDDIIMLTADLLQNHPEVLK 207

Query: 224 K--GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                   +++     +  +   L+  +A       V+   D       W      +   
Sbjct: 208 HWQERFRYVMVDEYQDTNASQYLLVHLLAGGYGNLCVV--GDDDQSIYGWRGADVGNILD 265

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
              +          + KL               +  N +   + VI  +    +      
Sbjct: 266 FEKDFKEC-----RVIKLEQNYR----------STGNILEAANHVIGHNEKRKEKRLWTA 310

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL---RMSLDENKKKSALITADRNL 398
           +                + +I   ++ EEA ++   +   R++ +      A++      
Sbjct: 311 SGSGRP-----------LDIIVVQDDEEEATTVVERVQVERLAHNLAYSDFAILYRTNAQ 359

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R  + +L    I   +  G+            S L  I   ND +A+  +V  P    G
Sbjct: 360 SRAFEEQLRFEDIPYVLIGGMQFFERKEVKDAISYLKVIGNANDEIALLRIVNFPKRGIG 419

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                       +   ++      ++       +       K      H          E
Sbjct: 420 DS------TVVRINQWSMEQGCPLFEAFGRVDEIEGVAEATKLKVRDLHRLLAEEMTIFE 473

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
               L +   +    L        +    +      +     + ++   E R        
Sbjct: 474 QEGELAEKGKRLFKRLGLEDELYRTIDDPVLARRKAENIEQIVNSMAAYEERIPM----- 528

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS--STLFILGTLES 636
                                 +   +++ ++ + +        ++     + ++    S
Sbjct: 529 ---------------------PSLSGFLEKVSLMDEDRFSGKDKKEHGRDAVTLMSLHSS 567

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + L G+ E + P   +     S   +  L       Y+G            +H
Sbjct: 568 KGLEFPFVFLVGMEEEILPHKRSIYEDFSVDEERRL------CYVGITR-------ARKH 614

Query: 697 LIYTRSLRENN----IPTIASRWLQRLLVLG 723
           L+ TR L+          + SR+L+ +    
Sbjct: 615 LVMTRCLQRKKYGKLQERVPSRFLEEIPAHL 645


>gi|146343947|ref|YP_001201803.1| putative UvrD helicase [Pseudomonas fluorescens SBW25]
 gi|146187759|emb|CAM96087.1| putative UvrD helicase [Pseudomonas fluorescens SBW25]
          Length = 1121

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 81/802 (10%), Positives = 194/802 (24%), Gaps = 119/802 (14%)

Query: 160  ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL----VELNASSPVGYQIALM 215
            +   +    L  L   +Y        +   +  +Y    L       N+          +
Sbjct: 342  QEYAQALATLATLPELQYPARSAKMVEHFTVILRYLLANLTLAMEGTNSLDFPEIAQRAI 401

Query: 216  RAE-------AEHLMKGTKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCH 265
            +A           L +     I++     +  A   L++ +       +   +    D  
Sbjct: 402  QALGAGETVGDALLEEDRILHIMVDEFQDTNQAQYDLLNLLVENWEPADNRSIAYVGDGF 461

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                ++                     Q  + +L          V+       E++  S 
Sbjct: 462  QSIYLFRGADLNLFTSV-VEAKAFGPKQMDILRLTVNFRSLPGVVEWNNATYAEVFKDSA 520

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN-EREEAISIAIALRMSL-D 383
                  +                    +K    V++      +  EA  +   ++ +L  
Sbjct: 521  YEFVPSVAF------------------RKGDGGVSVHPVATGQIGEAEEVTKVVQEALTK 562

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
            +  K  A++   R+  + +   L   GI +      P+      S + SL+ +++   D 
Sbjct: 563  DPSKSIAILVRGRSHLKHILPMLKEAGIEVRGKDIDPIGEAAPVSEVISLIRSLWHSADR 622

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
             +   L++       + +       + +   ALR                          
Sbjct: 623  ASWIALLRAAFVGLSWADCLTVARGHNVIENALRDEGVQ--------------------- 661

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                                     + +T ++      +    +   S+      +    
Sbjct: 662  --------------------AQLSSEGLTRVLRLLEVLDGVKRSSRGSELGWAVKSVWIA 701

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
            +          +   E    L +  ++     S    +   +   I +            
Sbjct: 702  LGGPATVNTGEMDDVETIFKLLTSHTE-----SGDLIDPQAFFRAIDKAYAS-------P 749

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLN-------EGVWPKNTAKNPFLSRVMQSDLNLKT 676
            K+  + ++    S+ L +D +++ GLN         ++        F       DL+  T
Sbjct: 750  KAGAVTVMTCHGSKGLEYDIVLIPGLNKGGAKDDAPLFYFRQMDGVFSVVPNLGDLDTTT 809

Query: 677  AEKYIGQAAHDFEM------ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
             E  + +                  ++  TR+  + ++     R+      +        
Sbjct: 810  PESRLFKFVGRMVRKDISDEVCRAAYVGTTRAKEDCHLFVCVDRFPAAEGEVQKEKEIKP 869

Query: 731  LKKRGQC--YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS-----FSEIKQLINDPY 783
                     +     ++                         S        +        
Sbjct: 870  AAGSLAECLWSAIGAQVKAVAPAFPIVAVTDSGVPSKARLAPSYKVELPKTVFVPAASND 929

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
             V     L  +       D      G ++H  + ++ K+ I            Q I S  
Sbjct: 930  QVPTENELNDELREEEGSDYRAKTIGIVYHWFVEQIGKQGIELWDEARVRTKAQAIASML 989

Query: 844  EKENLPPHIDIIWRHLFHKISHSFL-----EHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
             +E  P            ++  + +     +   K +         +            +
Sbjct: 990  RREGFPAAEVPQAVARILRLLSNTVNSIHGQWILKKRPG---SGHEVQVSAYRNGR--WV 1044

Query: 899  TGFADRIDLLKSGFVDITDYKT 920
              F DR      G   I+DYKT
Sbjct: 1045 HRFLDRPFED-DGVYWISDYKT 1065


>gi|317483860|ref|ZP_07942799.1| hypothetical protein HMPREF0179_00148 [Bilophila wadsworthia 3_1_6]
 gi|316924877|gb|EFV46024.1| hypothetical protein HMPREF0179_00148 [Bilophila wadsworthia 3_1_6]
          Length = 267

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 75/261 (28%), Gaps = 22/261 (8%)

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN---T 828
             S +  L   P    A+ I  L               GT  H         R+N      
Sbjct: 11   ASSLAGLFECPARWEAQNIRGLRTPSSGSARL-----GTAVHTSTALFDTSRMNGTGITP 65

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
             E        I    ++E +   +            H    +   I        +    +
Sbjct: 66   DEAAGAAVDAIHK-PDEEVVWDDLQPTEAERIALSLHRL--YCSTIAPRQTYAAIEATCE 122

Query: 889  -MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA---QKLIDPQLSLEAAAL 944
             + I  +GI LTG  DR+   + G   I D KTG +          +    QL++     
Sbjct: 123  RLDIADLGIALTGTVDRVRRTEDG-YGIADIKTGKSAVGADGTCKTQGHAAQLAVYELLA 181

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS--EKSLKNLIEIVTLLQ 1002
            +    + I     A +  +++ +  +   +         D L   E+    L    TL+ 
Sbjct: 182  EHS--TDICIEAPAQIIGLQVAKTERGQRVATGTISGGRDLLIGDEEFPGLLEMAATLIH 239

Query: 1003 NGEQPFISHLRLSEKSNIQSE 1023
            +G   F  + R +        
Sbjct: 240  SGN--FYGNPRSNGCGEKYCP 258


>gi|42524524|ref|NP_969904.1| exonuclease RexA [Bdellovibrio bacteriovorus HD100]
 gi|39576733|emb|CAE80897.1| probable exonuclease RexA [Bdellovibrio bacteriovorus HD100]
          Length = 1007

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 80/775 (10%), Positives = 205/775 (26%), Gaps = 94/775 (12%)

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            ++     + P    L+  +        V    D      ++     +      +      
Sbjct: 322  MVDEYQDTSPVQVELLRHLVGEKP---VFIVGDPQQSIYLFRGARSEVFREKVAEIEAQQ 378

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
                   KL+++              +      + +      P    ++    ++ ++  
Sbjct: 379  GD--VQVKLVNYRSSPEVLEFFNHYFTRLGSQFAAMTPDEKKPKKGPEVPVVQVVLSETG 436

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
            +  +  +++  +      +E +            + ++  ++         +      +G
Sbjct: 437  DEDETSAEI--LATVARIQELLQAGT--------SPEQICVLGRTHRTLEDIAKVAQEYG 486

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK--YLSRAK 468
            + + + +G             ++L  +   +D      L++ P       E   Y    +
Sbjct: 487  VPLQLHSGSGFYERREVLDALAVLKFLVNPHDNANFVALLRSPWLALPDSEILSYCHSFR 546

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
            ++    A +      +I  L+ +       +         ++ +     + +   +D   
Sbjct: 547  HSFWKEAQKNLDQKPEIHPLRVMKALLAQAEVKGLSWTLKKALIDLGLFDYSAR-IDSTG 605

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
            +    L    +  +         ++     + L+ +  DE            G+   +  
Sbjct: 606  RREANLWKVVSLLSQEE-RRPGFNYLDFLDSSLETLSTDEG-----------GEDADATP 653

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                +  + +  +A + +     ++ G    P+   +  L I                  
Sbjct: 654  VIEPKRVNFMTVHASKGLQFDQVILPGMGNDPRASHAPVLSIHEKTGLW----------S 703

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENN 707
            L              L+  +  +L  +  E++       +      +  +      +   
Sbjct: 704  LKVRNEETQAMAGSVLADQIVEELRKRETEEFN---RVLYVALTRAKSGVTLLWDKKVGK 760

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                A   L     L     F  + +          + D   K     RP+       + 
Sbjct: 761  KSWAAHCPLNLEEGLHEEKDFSYVVRSENPQPVKMSEQDLAEKDL---RPQWQAEASEKR 817

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
            +  S +E+      P  V A                 R  +GT  H +   L     +  
Sbjct: 818  KYISVTELVT----PEGVQAGGGYTPKA-SQLGAGLARAQQGTNAHRLFEALKFTSFD-- 870

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
                   + +I D   +K             L   I+  F+E            +     
Sbjct: 871  ------ELLKISDEDLKKPLEF-LAKTPELPLLRIINEGFVEW------GFALKYKEALM 917

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            +  I+  G+              G + + DYKTG     +TA +    QL     AL   
Sbjct: 918  QGQIDLWGVV------------DGTLWMVDYKTGSQRYSDTAFR----QLEAYTWALYRM 961

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
             +     +       ++L   + +D +   +   S  EL+E     L + +    
Sbjct: 962  KYLDNVQQ-------VKLAVVYPVDEVVKIEALGSLKELNE----RLEKSIDNYF 1005


>gi|269955531|ref|YP_003325320.1| ATP-dependent DNA helicase PcrA [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304212|gb|ACZ29762.1| ATP-dependent DNA helicase PcrA [Xylanimonas cellulosilytica DSM
           15894]
          Length = 896

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 73/701 (10%), Positives = 174/701 (24%), Gaps = 92/701 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R     + G  ++ +  + +           +          V 
Sbjct: 125 GEILAITFTNKAAAEMRERVEHLVGPAASRM-WVSTFHSACVRILRREY--------KVL 175

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++    +         +L  ++       P   P         A+ L++ I  ++ E  
Sbjct: 176 GLRSSFSIYD--AADSQRLVTLVTRELNLDPKKYP---------ARGLSNRISDLKNELV 224

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG------YQIALMRAE 218
             ED      +            L      +  RL + +A           + +      
Sbjct: 225 TPEDYAEQGEKDPV---------LADVYTRYQARLQQASALDFDDIIMTTVHLLQAFPNV 275

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTV----------ANHPNGAIVLPGLDCHIPT 268
           AEH  +     +++     +  A   L+  +              +              
Sbjct: 276 AEHYRR-RFRHVLVDEYQDTNHAQYVLVKELVGGVVSTGSTTGGGSTTGGGSTTGGGSTA 334

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +T          +    +    Y+        +I+  +       +  +        
Sbjct: 335 GGGSTAGGDLEPGELTVVGDADQSIYAFRGATIR-NIQEFEQDYRDATTILLEQNYRSTQ 393

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK- 387
                 +    RN D    ++       + +    AD+E +EA  +A  +    D +   
Sbjct: 394 TILSAANAVISRNADRKPKRLWTAAGAGARIVGYVADDEHQEARFVAEEIDRLGDSDGVR 453

Query: 388 --KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
               A+       +R ++  L R G+   +  G             + L A+   +D + 
Sbjct: 454 PGDVAIFYRTNAQSRSLEEVLVRVGLPYKVVGGTRFYERREIKDAIAYLRALANPDDDVN 513

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           +  ++  P    G   + L       E ++                              
Sbjct: 514 LRRVLNVPKRGLGERAEALVAGLAERERISF-----------------------GAALDR 550

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                 +S           D +      +   +         L  + +            
Sbjct: 551 AEDVPGMSTRTLNPLRGFRDLMRGLRALVEAGEPPAAILGAVLDRTGYLAELRASDDPQD 610

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                 L  L       + +     +++    +   A         + DGE  +      
Sbjct: 611 ASRVENLAELHAVATEFSQTDPEGSLVDFLERVSLVADSDQIPDEDVADGEAEQEPKVDQ 670

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
             + ++    ++ L F  + L G+ +G +P   +              L    +   +  
Sbjct: 671 GVVTLMTLHTAKGLEFPVVFLTGMEDGTFPHMRS--------------LHDDAELAEERR 716

Query: 686 HDFEMANGTRHLIYT-----RSLRENNIPTIASRWLQRLLV 721
             +      R  +Y      RS    +     SR+L  +  
Sbjct: 717 LAYVGITRARERLYLSRAGMRSAWGMSNEMPPSRFLTDVPE 757


>gi|154244731|ref|YP_001415689.1| hypothetical protein Xaut_0781 [Xanthobacter autotrophicus Py2]
 gi|154158816|gb|ABS66032.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
          Length = 886

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 89/787 (11%), Positives = 198/787 (25%), Gaps = 82/787 (10%)

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
             + A     L   +        +  +  ++  +   +   + + A  +         V+
Sbjct: 97  LADRAHERARLQDLMTIEARVRASLPAGVLSPRDLRDAALQRVTHAPAVLGAVELDRVVR 156

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                   +   +     ++  P   D           P       D+  +   + R EA
Sbjct: 157 VASVWRPLLIALARQAPLTWRNPGDPDAAWFTGELGSDPRPTPASPDI--VSCASPRAEA 214

Query: 372 ISIAIALRMSL---DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
           +      R  +        + A+            L L          AG+PL  +    
Sbjct: 215 VEALRWTRELIASGRARPDEIAVCATATEDWDDHMLVLAA-------DAGLPLHFSHGMP 267

Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            L S      +     A+A ++ + L++      +   A  +  L AL  +         
Sbjct: 268 ALAS-----REGQACAALADVLINGLSQGRVRRLFGHAAGRSRGLDALPPSWAQGLRPGA 322

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
               L++     +  H          +  ++  LL+  +                  G  
Sbjct: 323 ALFELEQWRRALDEAH------AHRTDGVDVRPLLIPVLEVLARGAAAADAAGGLLLGRA 376

Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
           + + W +              ++L      + G       +  +          +     
Sbjct: 377 ARALWVEALRRAPPEALEFSLQELRLPDGRDPGACAVWCPAGHLAAAPRRFVRLLGL--- 433

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
                      P+      L     L    L+ +++        +     A    +    
Sbjct: 434 ------STRSWPRRSGEDPLVPSHILSRDALDSESVTEQDRRTYMLVTAQAGGALVLSRS 487

Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
           + +       +   QA       +  R     R+   ++  + A R L R       +  
Sbjct: 488 RRNA------QGGLQAPSPLVPHDPRRTTALKRARVPSHAFSEADRLLAR-----PEEAA 536

Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
            +   R        R+    T      R        A  +  S + ++ ++ DP A   R
Sbjct: 537 TSPVLRAADACWRNRRSPAVTAHDGRVREDHPVIARAIAQVQSATSLRLMLRDPLAFVWR 596

Query: 789 RILKLDFI--PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK---------- 836
             L    +         D    G L H ++   +     +         +          
Sbjct: 597 YALGWRSLVEDEQPLSLDARAFGELVHEMLKRTVDALEPQPGYVRAARHEIENALDAASA 656

Query: 837 -QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA----- 890
              +    E+   P  +          ++   L  + +    + + +  +          
Sbjct: 657 AIAVQWPVERSTPPVLLWRHTLAAARDLALKALTLD-EAFQPVTRSWTEVAFGREDDGTN 715

Query: 891 --------------IESIGIHLTGFADRIDL-LKSGFVDITDYKTGDNPKKETAQ---KL 932
                         I   G+ + G  DR+D       V ++DYKTG  P K       + 
Sbjct: 716 AAGDLLWPPTAQVIIPGAGLRIRGSIDRVDFNSAHNGVRVSDYKTGVEPPKANEIVLGRG 775

Query: 933 IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
            + Q    A A +         R +A L ++   +         D+           ++ 
Sbjct: 776 AELQRVFYALAARQLVADN--PRVIARLVFLGTDRPRPYSLPDVDQAIADIGAHVSAAVD 833

Query: 993 NLIEIVT 999
            L   + 
Sbjct: 834 LLRRGIA 840


>gi|289435607|ref|YP_003465479.1| ATP-dependent nuclease, subunit A [Listeria seeligeri serovar 1/2b
            str. SLCC3954]
 gi|289171851|emb|CBH28397.1| ATP-dependent nuclease, subunit A [Listeria seeligeri serovar 1/2b
            str. SLCC3954]
          Length = 1236

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 78/865 (9%), Positives = 222/865 (25%), Gaps = 123/865 (14%)

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG--------TKGPIIIAGSTGSIPAT 242
             ++ + E   +         +   +    +                 ++I     +    
Sbjct: 358  FAEDFFEEKQKRGVLDFNDLEHLALNILLKEGAPTDVAKSYQKQFKEVLIDEYQDTNMVQ 417

Query: 243  ARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HPQY 294
              +++ V         +    D       +                              
Sbjct: 418  ETILTLVTRTNETSGNLFMVGDVKQSIYRFRLAEPTLFMAKYQQYRQDGTNGGIRIDLSR 477

Query: 295  SLAKLLDFLDIKREDVKRLGN---VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
            +     + LD      ++L +      +    + +   +  P   +      +++ K   
Sbjct: 478  NFRSRKEVLDATNFIFRQLMDKQVAEIDYDDAAELTLGARFPESQNMSTELLLIDMKTEE 537

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDE---------------NKKKSALITADR 396
            I+    +++  E    + EA +IA+ +R  +D                  +   +++   
Sbjct: 538  IEATDDELSPQELQKNQVEARAIAMKIRAMVDNKFPIYDKKMQQNRPIQYRDIVILSRAM 597

Query: 397  NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
              A  ++  +    I    +       T   + + +L+  I      + +A +++ P+  
Sbjct: 598  TSAPDIEEAMKILDIPFYANNNSGYFETTEVATMIALMKVIDNPYQDIPLAAVLRSPIIG 657

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                E    R                  +    +  +     Q     + +W+     E+
Sbjct: 658  LKEEELGQIRMAKKKGYFFDAMLAFKDSVNSEAADKISEFIKQ-----LNNWRELSIREN 712

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                +  +         +      K       ++ D                 R +  L 
Sbjct: 713  LTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTSFRGLFRFVRFVERLE 772

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
               +    +    +  +    +  +A + ++    ++ G + K  +    +  +L     
Sbjct: 773  IRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVAGLSRKFNMRDIYSKSLLDKDYG 832

Query: 637  RLLNFD----TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ--------- 683
                +      ++   + +    +   +      +    + L  AE+ +           
Sbjct: 833  FASAYRDIEKMIVYPTIMQQAIKQKKTREMIAEEMRVLYVALTRAEEKLILVGTVPNFEK 892

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIAS-----------------RWLQRLLVLGGTD 726
             + ++      +  I   ++R      +                     +Q L       
Sbjct: 893  TSKNWLQVAKGKETILPAAVRAKAKCYLDWIGYTLIRHTSFKELLCEELIQTLPTDMMLQ 952

Query: 727  FFDNLKK-------RGQCYLDWTRKL--DYTTKQPHYKRPKPFPPLEAQPR--------- 768
                 K+        G    +W   +            + +    +  + +         
Sbjct: 953  IEIKTKEMFLSSEKEGVKQDNWMENIKAHQPVPVQSAYKDEIKRFMNYRYKDEASTKIRA 1012

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-------PDRTDRGTLFHNIITELIK 821
              S +E+K+      +     +LK        +           T+ GT  H ++  +  
Sbjct: 1013 KQSVTELKRQFTLQDSWSDTTLLKEFQKVSLDRPKFLQKNKLSATEVGTAMHTLMQAVPL 1072

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI--QSSIE 879
            +    +  ++  L++ +I+     +     I+        +I   F E E      S  E
Sbjct: 1073 ENK-PSEEDVKQLLQTMIEKDILTDAQVKAIN------IDQIIG-FFESELGQNVLSEKE 1124

Query: 880  KIFVNIPAKMAIE----------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNP---KK 926
             +   +P    +              + + G  D +   +   + + DYKT         
Sbjct: 1125 NVKREVPFSYLLPVEKLDKQANLDEHVLIQGVVDSMIEQED-SIILIDYKTDKIAGRYSS 1183

Query: 927  ETAQKL-----IDPQLSLEAAALKA 946
              A +         Q+ L A A++A
Sbjct: 1184 WEAAEKIMKERYQVQIKLYAEAIEA 1208


>gi|184201466|ref|YP_001855673.1| ATP-dependent DNA helicase PcrA [Kocuria rhizophila DC2201]
 gi|183581696|dbj|BAG30167.1| ATP-dependent DNA helicase UvrD1 [Kocuria rhizophila DC2201]
          Length = 818

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 76/710 (10%), Positives = 176/710 (24%), Gaps = 95/710 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADL-LLSYNLNPPV 103
             +     T +A  E+R    E+ G  +  +  I +   +       +   L  N N  +
Sbjct: 85  GEILAITFTNKAAAEMRERIAELVGDSARTM-WISTFHSLCVRILRREAKTLGLNTNFSI 143

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            +    L L   +       P        +                  ++ + + +    
Sbjct: 144 YDSADSLRLITQVAKQHELDPKRFAPKAIQH----------------RISALKNELV--- 184

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              +D   L        +  A        + +T+RL   NA          +        
Sbjct: 185 ---DDETCLARASSTDPFESAVAQ---VYRGYTQRLRAANAMDFDDLIGETVHMFRAFPQ 238

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTV----------ANHPNGAIVLPGLDCHIPT 268
                +     +++     +  A   L+  +           +    A +    D     
Sbjct: 239 VLEYYRRRFRHVLVDEYQDTNHAQYALVRELVGGDSPGHTDESGIPPAELTVVGDSDQSI 298

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             +     ++      +   +                           +  +        
Sbjct: 299 YAFRGADIRNITDFERDFPAAR--------------------------TIMLEQNYRSTQ 332

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-- 386
                 +    +N D  + K+   +   + +    A+NE EEA  IA  +    DE+   
Sbjct: 333 NILSAANAVISQNADRRDKKLWTAEGDGAPIVGYAAENEHEEARFIAEEIDRLQDEHGIR 392

Query: 387 -KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
               A+       +R ++  L R G+   +  G             S L AI    D + 
Sbjct: 393 PGDVAVFYRTNAQSRSLEEILMRVGLPYKVVGGTRFYERKEIKDAMSYLRAIANPADDIT 452

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           +  +V  P    G   +    A    E ++     +  D     +               
Sbjct: 453 VRRIVNEPKRGIGDRAQGSIAALADREGISFSEAMHRLDEAPGLATRSANAIRTFAQLMD 512

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
              +         +   +++     +  L T  T+        ++++   +         
Sbjct: 513 DLGELAQGASVTAVLEAVLEQSGY-LEALRT-STDPQDESRVENLAELVAVVREF----- 565

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                        E G         ++     I +      +             +    
Sbjct: 566 --------EKDRPEAGLGEFLEHVALVADADQIPSRPDTAAEGTASAQQIAQEVEEARDQ 617

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
             + ++    ++ L F  + L G+  G++     ++      M+ +  L        +  
Sbjct: 618 GVVTLMTLHTAKGLEFPVVFLTGMEHGIF--PHQRSFADPSSMEEERRLAYVGITRARQR 675

Query: 686 HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
                A        +RSL   +    AS +L  +         +     G
Sbjct: 676 LYITRAE-------SRSLWGQSQFNPASPFLDEIPAHLIDWKREGAAASG 718


>gi|110835399|ref|YP_694258.1| ATP-dependent DNA helicase Rep [Alcanivorax borkumensis SK2]
 gi|110648510|emb|CAL17986.1| ATP-dependent DNA helicase Rep [Alcanivorax borkumensis SK2]
          Length = 673

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 77/685 (11%), Positives = 182/685 (26%), Gaps = 105/685 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL-----SYNLN 100
            +     T +A +E++    ++  +  T   I+ +  ++      ++L        +++ 
Sbjct: 50  HIAAVTFTNKASREMKERVQQLVSRDLTRGLIVSTFHNLGLRILKSELKACGLRNGFSIL 109

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
               + + L E+ R     R+     +      S  +  + P  A+  A+   D+   + 
Sbjct: 110 DGADSKEILKEILRQGESERDLDAVDVIHKRISSWKNALVLPEQAVSTAETDEDLRAAMA 169

Query: 161 TEEKK--WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
                      +A+  +   +             + W                       
Sbjct: 170 YSGYDRMLRVCNAVDFDDLILMPARMFHEQPRILEKW----------------------- 206

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     +++     +  A   ++  +   P G       D       W     ++
Sbjct: 207 -----RNRIQYLLVDEYQDTNGAQYEMVKMLT-LPEG-KFTVVGDDDQSIYAWRGARPEN 259

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +                                 ++        +     +T  
Sbjct: 260 LAQLQEDWP--------------------------TLKVVKLEQNYRSTGRILKAANTVI 293

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395
             N    E  + +       +      +E  E   IA  +     +     K  A++   
Sbjct: 294 ANNPHEFEKSLWSDYGYGEPIRFSALRDEEAETEWIASDIFHRRLQKGLQWKDFAVLYRG 353

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++++L    I   +S G    +      L   L  +   +D  A   ++  P  
Sbjct: 354 NFQSRILEMKLQSLSIPYKVSGGKSFFSRSEIKDLMCYLRLLVNPDDDNAFLRIINTPRR 413

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
           + G                   G  +  D   L  ++  + A           Q   +  
Sbjct: 414 EIGPATLEKLATWALKREQ---GLYHVCDDFALSEVMNPKAAE--------KLQKFKAWL 462

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
           D +       + LQ +  L+T    +     N S     +  +  +  +     R L   
Sbjct: 463 DAKRQFCFGQNSLQAVQELITDMDYEGWLMQNASSPRIGEKNIENIWQLVRSIERMLEKQ 522

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             +EEG +      K +             +D++ +  +        + S  + ++    
Sbjct: 523 EDDEEGASDLESVIKKL-----------VLLDMLEQQQEE-------DDSDRVQLMTLHA 564

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           S+ L F  + + G+ E           FL      + +    E+ +              
Sbjct: 565 SKGLEFPHVYMMGVEEE----------FLPHRTSIEEDNIVEERRLMYVGITRARETLAM 614

Query: 696 HLIYTRSLRENNIPTIASRWLQRLL 720
               TR      I T ASR++  + 
Sbjct: 615 TQALTRKQYGERIDTTASRFVDEMP 639


>gi|41410192|ref|NP_963028.1| RecC [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41399026|gb|AAS06644.1| RecC [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 1096

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 82/732 (11%), Positives = 183/732 (25%), Gaps = 59/732 (8%)

Query: 37  DPLNPLLLASVTIYVPTKRAIQELRSEFI-----EITGKKSTILPIIKSLGDVVEEKFTA 91
            P +P  L    + VP +   + L             G         +S G ++ E    
Sbjct: 25  PPADPFALE--LVVVPARGVERWLSQRLSHVLGRARDGDGVCAGVQFRSPGSLIAEITGT 82

Query: 92  DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
                ++ +     +        L   W   L   +      +   L  +       A+ 
Sbjct: 83  ADDDPWSPDALAWPLLE-AIDCSLDEPWCRTLATHLGHFDTGAEAELRRT--RRYEAARR 139

Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
           LA +      +         L  +          + L+     W   L  + A  P    
Sbjct: 140 LAGLFAGYARQR------PRLLVDWLDGDPGDLDEDLRWQPPLWRALLARVAADPPHVRH 193

Query: 212 IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
              +           +  + + G T        L+  +A H +  + LP         +W
Sbjct: 194 AETIARLRRAPSDLPQ-RLSLFGHTRLACTDVELLDALATHHDLHLWLPHP----SDRLW 248

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
             +    T+        ++H   +   L       RE  + L          +       
Sbjct: 249 RAL--AGTHGVIPRRDDTSHRAVAHPLLATLGRDLRELQRGLPADPRTDEYLAGDARPDT 306

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKK 387
           L          + +     ++      V +        +   +   L   L +      +
Sbjct: 307 LLGWLQSDIAANAVRPVGRSLAAGDRSVQIHNCHGPARQVDVLREMLLGLLADDPTLQPR 366

Query: 388 KSALITADRNLARRVK----------LELTRFGINIDISAGIPLSTT-LHSSILTSLLNA 436
              ++  D      +                        A   L  T     +   LL  
Sbjct: 367 DILVMCPDIESYAPLIMADFGLGDVVHGAHPAHQLRVRLADRSLIQTNPLLGVAAQLLAL 426

Query: 437 IFKLNDFMAIATLVKHPLAKFGF----------PEKYLSRAKNALELVALRGNKNSYDIM 486
                    +  L + P  +  F                           R   +   + 
Sbjct: 427 AGGRVRASEVLNLAQTPAVRARFGFTDDDLDTITGWVRQANIRWGLDRQHRRPYHVDFVH 486

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
           +     +DRI      +   +     +    +++   V    Q    +   +   +S  G
Sbjct: 487 NTWRFGIDRILAGVAMSDDSNAWIDATLPLDDVSSNRVQLAGQLAEFVARLQHVLDSLTG 546

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              ++DW          + L    +  + W   + +   +  S    + +       +  
Sbjct: 547 ARPLTDWLT---AVADGIALLTRVRDADEWQSGQLQREFAAVSAQAGSRADTVLRLPDVR 603

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            ++TR + G   +    ++ TL +   +  R +    + L GL++G++            
Sbjct: 604 ALLTRHLSGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGLF---PRLGVVDGD 659

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRH----LIYTRSLRENNIPTIASRWLQRLLVL 722
              +   +        +       A G       + YT +   +  P   +  L  LL  
Sbjct: 660 DALARCPMTGERDIRSEDRQLLLDAIGAATEKLVITYTGANEYSGQPRPPAVPLAELLDT 719

Query: 723 GGTDFFDNLKKR 734
                 + ++ R
Sbjct: 720 LDITTAEPVRDR 731


>gi|21673182|ref|NP_661247.1| DNA helicase II [Chlorobium tepidum TLS]
 gi|21646262|gb|AAM71589.1| DNA helicase II [Chlorobium tepidum TLS]
          Length = 759

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 79/748 (10%), Positives = 184/748 (24%), Gaps = 128/748 (17%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            ++     T +A  E+R     I    S     I +   V      + + L         
Sbjct: 64  QNILALTFTNKAAGEMRQRIDSILEYGSASSLWIGTFHSVFARLLRSYIHLI-------- 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
              R   +          L          SP +LP++  +           I   +    
Sbjct: 116 GYDRNFSIFDADDS--KSLIKQCMKELNLSPETLPVNLVH---------SAISKAKNSFV 164

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
              + H    +            + +  + +  +L E NA       I  +    E    
Sbjct: 165 LPPEFHRKAIDDQSQK-------ISLVYERYVHKLRENNALDFDDLLIKPIELFTEQPRV 217

Query: 225 GTK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
             +       ++I     +      +   +A       +    D       W      + 
Sbjct: 218 LEQLQDYFKYLLIDEYQDTNRVQYLVAKMIAEKHRN--IFVVGDDAQSIYSWRGADISNI 275

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
              + +   +          +  L       K + + +N +  R+               
Sbjct: 276 LNFNDDYGDAQ---------VFKLVDNYRSTKTILDAANSVISRN--------------- 311

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396
             T  ++ ++         + LIEA NE+ EA  +A  ++          +  A+     
Sbjct: 312 --THQIKKELVANAGMGEPITLIEAFNEKREAEKVAEHIKSIRLSKGAQYRSFAVFYRTN 369

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++  + +  I   I   +            + +  +    D  ++  ++  P   
Sbjct: 370 AQSRVIEDMMRQNRIPYKIFGSVSFYKRKEIKDAVAYMRLVLNDRDSESLLRVINFP--- 426

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                                       I  LK    +R              S      
Sbjct: 427 --------------------PRKIGDVSINKLKEFAEER------------NISLYEAVK 454

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD-EHRKLPNL 575
           +         ++  +T                +  D   +       + L  E      L
Sbjct: 455 RAGEGGFQARLVNALTQFTDLIEAMRKQAEEGTAYDVLSMLYETTGLLSLLKEENTPEAL 514

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              E  + L S+     +       N+    D ++ +          E  + + ++    
Sbjct: 515 ARHENLQELLSMTRDFADHNP----NSATLGDFLSTISLASDYDETQESDNYVSLMTVHA 570

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + + G+ E ++P                LN     +   +    +      R
Sbjct: 571 AKGLEFPVVFVTGMEEKLFP----------------LNSYEPGELEEERRLFYVAITRAR 614

Query: 696 H-LIYTRSLRENN----IPTIASRWLQR-----LLVLGGTDFFDNLKKRGQCYLDWTRKL 745
             L  + +            + S ++       ++  GG    ++ KK     +      
Sbjct: 615 EKLFLSWAQSRYMYGQPQMCMRSTFINEINPNIIVTEGGRKLSESPKKVAATAMAGRPVF 674

Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
             + +      P    P      +   +
Sbjct: 675 GSSLRPQPGGSPAAKVPTVKPAGSARPT 702


>gi|300870871|ref|YP_003785742.1| ATP dependent DNA helicase [Brachyspira pilosicoli 95/1000]
 gi|300688570|gb|ADK31241.1| ATP dependent DNA helicase [Brachyspira pilosicoli 95/1000]
          Length = 660

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 81/720 (11%), Positives = 194/720 (26%), Gaps = 115/720 (15%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             + E   Y   N +  +++     T +A  E+R     +  +K   L +I +       
Sbjct: 29  RVITERIAYLIKNGIDPSNILAVTFTNKAANEMRERIASLLKEKPKQL-VISTFHSFCVR 87

Query: 88  KFTADLL-LSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
               D+  L Y  N  + S+      +  ++   +    +  ++L+              
Sbjct: 88  VLKLDIDKLGYKKNFSIYSSSDSRTLIRNILREVKVNTLNYDENLFAWY----------- 136

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
                     ID  +    K  ++    + +            K   + +   L   NA 
Sbjct: 137 ----------IDRYKNNLMKPNEVVPHDDLEKIA---------KRVYEVYQNYLKGYNAV 177

Query: 206 SPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                    +             +     I++     +  A  +L S +A+     +V+ 
Sbjct: 178 DFNDLINLTIDLYINFPDVLDKYQERFKYIMVDEYQDTNLAQYKLTSLLASKYKNIVVV- 236

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D       +      +     +      +P+  +  L       +  ++    V +  
Sbjct: 237 -GDDDQSIYAFRGADVSNILSFENE-----YPEAKIITLNKNYRSTKAILEAAHAVISNN 290

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
             R      +        +                     ++  ++ER+EA  IA  +  
Sbjct: 291 TQRKAKEVVAVNDEGIPPV---------------------IMPCEDERDEAQFIAENITQ 329

Query: 381 SL---DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
           +    + N +  A++    + +R  +  L   GI   +              + + LN  
Sbjct: 330 TAINKNLNYENFAILFRMNSQSRIFEEALRFRGIPYTVVGAFQFYERKEIKDILAYLNLF 389

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
               D +++  ++  P    G                      N   I +  SL    + 
Sbjct: 390 VNPEDEVSLLRVINIPKRGIGAVAINNL---------------NEISIKNGVSLYQTLLD 434

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
            +  +   P  ++ + +        ++ +  +  T                   D     
Sbjct: 435 YENIDDIPPKAKTGIKDFL-----DIIHYYNEIFTVDKNTLEKPKLYENINKFLDTIAYH 489

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              L +    E         E     ++              A    ++D I  L+    
Sbjct: 490 NEVLNSSDTKEQGSKKIENIESLMNGIAEYEK------GNKNATLKNYLDRI--LLMSIE 541

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
              + EK   + ++    ++ L F  + + G+          ++  L     S       
Sbjct: 542 ENNEEEKKKGVMLMSIHAAKGLEFPYVYICGM----------EDGILPHHKSSSEREIEE 591

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNI----PTIASRWLQRLLVLGGTDFFDNLKK 733
           E+ +   A    M    +HL  T  ++            S +L+ +      D   + ++
Sbjct: 592 ERRLCYVA----MTRAKKHLTLTYCMKRKKQGRDVECTPSIFLEEMRKGLPEDMAMDEEE 647


>gi|294624036|ref|ZP_06702801.1| exodeoxyribonuclease V gamma chain [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601665|gb|EFF45637.1| exodeoxyribonuclease V gamma chain [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1072

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 93/871 (10%), Positives = 211/871 (24%), Gaps = 112/871 (12%)

Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
           RL    ++ L      L P +             LA  LA + +  +   + W       
Sbjct: 38  RLYAALQSDLGSDAA-LAPLAGYLSDGDALKPWALAGELASVFEKHQAWRRDW------- 89

Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG---PI 230
                + W   AD     ++ W                   +   A       +G    +
Sbjct: 90  ----LLRWEAGADPDDSQARLWRSIAA--GRQYRARRIGQYLDRYARADGPLPQGLPPRV 143

Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
                    P   R+++T A        LP         +      +  +          
Sbjct: 144 FAFAILNISPDVLRVLATQARVGTLHFYLPTPTQGYWGDLQTLRQRRREDGAMQLFAE-- 201

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD------------ 338
             Q     LL        D   L      ++  + + + +                    
Sbjct: 202 --QVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEIAAYADPLDSGRRTLADGGLGDSLL 259

Query: 339 --------MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------ 384
                    R     + ++P +      + +        E   +   LR  LD+      
Sbjct: 260 RHMQSDLFHRRGPAADARLPAVNLHDPSLQVHACHTRLRELQVLHDQLRALLDDARFDPP 319

Query: 385 -NKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              ++ A+++ + +        +         +   ++   PL++   + +  +LL    
Sbjct: 320 LQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYALADASPLASEPLAEVFLTLLGLPI 379

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKY--------LSRAKNALELVALRGNKNSYDIMDLKS 490
                  I  L+                        A  A   +     +      D   
Sbjct: 380 ARFGLHEILDLLASAPIAEAAGLDEAGLERLRNWLHAAGARWGLDAAHRRQHQAPGDDAY 439

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAV-LLVDHILQCITPLVTYKTNKNSTCGNLS 549
                +            +               +  +   +  L   + ++ +    ++
Sbjct: 440 TWRFALDRLLLGHASGADEDIDGVAPWPQLEGSALAALDTLLRLLRVLERHQAALAEAMT 499

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
             +W +  +  L+ +              +  +TL   F++             E +   
Sbjct: 500 PVEWRERLLGLLETLMPTTPTAPRAQRALDRLRTLIDQFARDAVRAEYAGKVPAEVVRAH 559

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF------ 663
              + GE+       +  +     +  RLL F  + L G+N+G +P+             
Sbjct: 560 FAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRVICLLGMNDGDFPRRDPAAGLNRLTAE 619

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
           L    +   +  T E         F  A    +L Y  +   +      S  +  LL   
Sbjct: 620 LGTERRRHGDRSTREDDRFLFLQLFASAQEVFYLSYLGADARDGSVREPSVLVSELLASA 679

Query: 724 GTDFFD----------------------------NLKKRGQCYLDWTRKLDYTTKQPHYK 755
                                                +R      W   +D    Q    
Sbjct: 680 AQYHAASNALDTLVVRHPLQPFAAAAFGALGDDGADPRRFSYRRQWRPAVDSLVGQRQPL 739

Query: 756 RPKPFPPLEAQPRTYSFS----EIKQLINDPYAVYARRILKLDFIPHFKKDPD-----RT 806
            P     L A+      S     +++L+ DP   + R  L +       +  D       
Sbjct: 740 APWVAGALPAEEIALPTSMSIDALRRLLTDPAGQFLRHRLGMRLPDPAGEGSDLEPLLAP 799

Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKISH 865
            RG   + +  ++ +  +  +T  +   ++                 +  R       + 
Sbjct: 800 TRGLDQYGLQQQVFEAALAGDTEHLYERLRA---RALLPSGPLGRRQLDERVAQLRPYAD 856

Query: 866 SFLEHEEKIQSSIEKIFV---NIPAKMAIES 893
           +F +   +  +   ++ V    I     +  
Sbjct: 857 AFRQWRGQSPAQSRRLQVQIGEIELHGRLPG 887


>gi|297620278|ref|YP_003708415.1| exodeoxyribonuclease V gamma chain [Waddlia chondrophila WSU
           86-1044]
 gi|297375579|gb|ADI37409.1| exodeoxyribonuclease V gamma chain [Waddlia chondrophila WSU
           86-1044]
          Length = 1106

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 93/857 (10%), Positives = 229/857 (26%), Gaps = 126/857 (14%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS-----TILPIIK 79
           +L   L E       +P  +  V + VP+K     L  +  E  G  +      + P ++
Sbjct: 15  ILYQRLKEQLFTSDTDPFTI-RV-VVVPSKVMKNWLSLKLAEDLGVAAGIECLFLEPAMQ 72

Query: 80  SLGDVVEE--KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            L  ++E+  +    L     L   +    R    +    IW   L D + D        
Sbjct: 73  RLQKLLEDPEENAFQLPSRVVLALSIEREIRQALKSEKSEIW-KPLKDHLLD--KRRKNL 129

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                   + L+  LA +    E   +K   L   +  +    W             W  
Sbjct: 130 TGKGEKRLVSLSDQLAVLFAQYEKYGRKM--LQRWQKGEPAG-WQELL---------WKR 177

Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
            + ++   S                 K     + +   +       +++ ++++H     
Sbjct: 178 IVGKVGPESFFW--------------KKGNITVHLFALSYISRQQHQMLCSLSSHVPVCY 223

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
            L        + + +            N   S        +LL   +    +  +LG + 
Sbjct: 224 YLLSPCEVFWSDLLSDKENSRLIRCWENQGMSAEALSEATELLFERNPLLANWGKLGRLM 283

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC----------FSDVALIEADNE 367
                 + + +         +      L+  +  ++             + + +  + ++
Sbjct: 284 AAQIEETTLQTDENYRELDQESTCLQALQMDLLKLRNGKFLEKRSFKEDNSIQIHVSTSK 343

Query: 368 REEAISIAIALR----MSLDENKKKSALITADRNLARRVKLEL---TRFGINIDISAGIP 420
             E  ++   L        + +     ++  +  +   +   +    +  +N  I     
Sbjct: 344 TREVQALYQTLLGIIDQHREIDPYDIVVMAPNIKVYEPMIRAVFQSPQSQLNCQIMDLNL 403

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
           L  +        LL+      +  +I  L     + F F EK         ++     + 
Sbjct: 404 LDQSDVVKGFFHLLDLAETRWENESILNL----FSFFSFQEKQGLTQTEVEKIGKWVRDT 459

Query: 481 NSYDIMDLKSLVLDRIATQ-----KNNTHVPHWQSRLSEEDKELAVLLV----DHILQCI 531
                +D +      +         +N+    W+  +       A++L     +      
Sbjct: 460 KIRWGIDARHRSEILLRNHCEKGMLDNSAAGTWKMGIDRLLLGTAMILPSGIEEKARFNR 519

Query: 532 TPLVTYKTNKNSTCGNL--------------------SISDWTKLTVTCLQNVCLDEHRK 571
            PL     +     G                       + +W++  +  L          
Sbjct: 520 RPLREVAASDQELLGEWAFLIGKLREDLSLLSSGKKMPLDEWSEYLLYLLNQYFSWNRAS 579

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                  E     S    +I + G+         I  + + ++ + V  +      +   
Sbjct: 580 EKEKAQAETLAK-SIELLRIADAGAKDFYPFSTVIFHLKKALELQEVHDRENYVQAVRFC 638

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF--E 689
             L  R +    +++ G++E  +     ++  +   +     +           + F   
Sbjct: 639 SMLPMRAVPAKVVVMMGMSEENY--PRKEDKTILNQLYFQKGVDPFPSTTEFDRYLFLEA 696

Query: 690 MANGTRHLIYTRSLRENNIP--TIASRWLQRLLVLGGTD--------------------- 726
           + +  + LI +   +E         S  +  L+                           
Sbjct: 697 VLSARQSLILSYHKKEQGGEKLNECSLLISELVHYLDQSFSISGLKPSESIVYEHPFYSF 756

Query: 727 ----FFDNLKKRGQCYLDWTRKLD------YTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
               F +  K R     D+   L        ++ +       P      +       EIK
Sbjct: 757 DKKYFQEGQKIRSYSMPDYLAALSYYKVENKSSYRFLPAFHSPSSLTNQKFEVIDVKEIK 816

Query: 777 QLINDPYAVYARRILKL 793
           +L  +P+  Y ++ L +
Sbjct: 817 RLARNPFRFYFQKRLGI 833


>gi|257054727|ref|YP_003132559.1| RecB family exonuclease [Saccharomonospora viridis DSM 43017]
 gi|256584599|gb|ACU95732.1| RecB family exonuclease [Saccharomonospora viridis DSM 43017]
          Length = 286

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 56/182 (30%), Gaps = 13/182 (7%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
             + + +    + P       + +             T  G + HN + EL     ++ T
Sbjct: 17  KVTPARLSLYDDCPRRFRMTYLDQPAPSRT--GPWAHTTLGAVIHNALRELFALPASERT 74

Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
           PE    +           +                     ++ E+  +  E + V     
Sbjct: 75  PERAEALVSRHWRSGGFADAEQVARYAEAAR-----RWTADYVERHGADAEPVGVERWVS 129

Query: 889 MAIESIG----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
             + S      + + G ADRID    G + + DYKTG  P  +   +     L+L A A 
Sbjct: 130 ATVGSDPASPSLIVEGRADRIDAH-DGELVVIDYKTGRTPPSDEHAR-RSRALALYAIAA 187

Query: 945 KA 946
             
Sbjct: 188 SR 189


>gi|255319694|ref|ZP_05360902.1| exonuclease V, beta chain [Acinetobacter radioresistens SK82]
 gi|262380024|ref|ZP_06073179.1| exodeoxyribonuclease V, beta subunit [Acinetobacter radioresistens
            SH164]
 gi|255303223|gb|EET82432.1| exonuclease V, beta chain [Acinetobacter radioresistens SK82]
 gi|262298218|gb|EEY86132.1| exodeoxyribonuclease V, beta subunit [Acinetobacter radioresistens
            SH164]
          Length = 1234

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 91/942 (9%), Positives = 215/942 (22%), Gaps = 204/942 (21%)

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHL-------MKGTKGPIIIAGSTGSIPA 241
            +   K   + L +   ++       L  A            ++     I++     +   
Sbjct: 363  QEVRKRLPQLLQQRGETTFSQQIRTLAEALQGEQGQRFAVYVQARYPLIVVDEFQDTNQD 422

Query: 242  TARLMSTVANHPNGAIV---LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
               +++++  HP        +   D       +      +      +        Y+   
Sbjct: 423  QDNMLASIWRHPQRHQHSCMIMVGDPKQAIYGFRGGDMLTYIKARQDVLIKQGKLYT--- 479

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
                L      V  L  V + ++ R +   +      T                +K +  
Sbjct: 480  ----LRQNHRSVPELVEVVDALFQREVNFGEEV--IYTPIQAGARQHPPLTDRQRKNYCP 533

Query: 359  VALIEADNEREEAISIAIALRMSLDE-----------------NKKKSALITADRNLARR 401
            +  ++  ++ +EA  +A  +R  L+                  N+   A+++ + +   +
Sbjct: 534  LRWVQLSDKNKEAEQVAWKIRQLLNHGIAKELLFDESGGQRPLNENDIAILSKNHDGLDK 593

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
             +  L   GI ++  +   +     +  + +LL AI    D   +   +   L  F    
Sbjct: 594  AQYALESLGIRVNRPSKRSVFDCQVARDVGALLTAIMHPYDEGKVKRALLSRLLDFNLQS 653

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                                                                E+  +   
Sbjct: 654  LVEL------------------------------------------------EQRTDGLS 665

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
              +          +                 W KL               + +   E   
Sbjct: 666  SFIHKFDDIRELWLERGFLSAWQYCLQHFQVWQKLVA-------------IASKDNERAV 712

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRL----IDGETVKPKIEKSSTLFILGTLESR 637
              L  L   + +           +     +L         ++ ++   + + ++   +S+
Sbjct: 713  VNLRHLTEVLSQHSEIYPGAKNLYYWYFKQLQSPSEREWELERRLSNEAGVQLMTIHQSK 772

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA--------AHDFE 689
             L F  + L G ++     N   N      +         ++ I  A        A +  
Sbjct: 773  GLEFKVVFLLGADKAFKEMNKTLNFSTVEQLNPVTGQLEKQRVIAVADKNLLDENAVNQH 832

Query: 690  MANGTRH------LIYTRSLRENNIPTIASRWLQRLL---VLGGTDFFDNLKKRGQCYLD 740
                         +  TR+          +    R          + F +     +  L+
Sbjct: 833  QERAAAENRRLWYVALTRASHRVYAMLQDTEGKARHSLAFWRNRAEPFVHPHCMDEPLLE 892

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN--------DPYAVYAR---- 788
                    +        +     + +    + +    L          DP A   +    
Sbjct: 893  QLPAKVSASSVSKQISVQALNLPQQRFYPRAKTSFSYLAQHLKTRKIFDPLANEVKRPES 952

Query: 789  -----------RILKLDFIPHFKKDPDRTDR-GTLFHNIITELIKKRINKNTPEINHLMK 836
                        +     +   K++       G   H I   +  +       EI    K
Sbjct: 953  AEDELHVVDKAYLPATQPLSWIKQNFPMGTVAGNFLHEIFEHIDFQEPADWILEIRRRFK 1012

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-------------- 882
                  + +       D   +    ++  ++L  E   Q     +               
Sbjct: 1013 NDYSGLWNELRDKYQRDFPEQAEDEQLLLNWLA-EWLQQVLGTPLHAGFELKHLQPEQHL 1071

Query: 883  VNIPAKMAIESIGIH--------------------------LTGFADRIDLLKSGFVDIT 916
               P  +A+    +                           L G  D +         I 
Sbjct: 1072 AEFPFCLALSDHVLAIQRIHQLFAEYGIDMPELNPAESARYLNGSIDLVYFDG-HQYHIA 1130

Query: 917  DYKTG-----------DNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLF 961
            DYK+             + +   +      Q  L   AL      Q+      R +    
Sbjct: 1131 DYKSNFLGNDQSDYNHASIRASMSHSSYWLQAGLYLVALHRYLSIQMQNYEISRDLGGAS 1190

Query: 962  YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
            Y+ L+             K S + +       L  ++     
Sbjct: 1191 YLYLRGMNGQPDHGMYYWKPSTEFIL-----RLDALLGYFIE 1227


>gi|256371554|ref|YP_003109378.1| hypothetical protein Afer_0757 [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008138|gb|ACU53705.1| conserved hypothetical protein [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 259

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 13/173 (7%)

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
           A P T + ++     + P+A     I  +   P           GTL H  + +  ++  
Sbjct: 4   APPATLTPTKATAFSDCPFAFRRSVIDGVRTPPTR-----PLAVGTLVHAALEDFYRREP 58

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE------HEEKIQSSI 878
           ++ +    +            ++                 +  +        + +  + +
Sbjct: 59  DRRSEAALNEAVDTAVRAAACDDELGAYVAELDDRERAALYRSITTLSRTILDLEDPARV 118

Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
             I   +  +  IE  G+H+ G  DR+DL   G + + DYKTG  P       
Sbjct: 119 RAIGTELRLEATIE--GVHVRGVIDRLDLDDEGDLVVVDYKTGRTPPPSHQDA 169


>gi|328907786|gb|EGG27549.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium sp.
            P08]
          Length = 1078

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 110/1063 (10%), Positives = 240/1063 (22%), Gaps = 148/1063 (13%)

Query: 44   LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV-VEEKFTADLLLSYNLNPP 102
            + ++ +    + A +ELR    E      ++L   +   D   E            +   
Sbjct: 47   MENLLLVTFNRSAARELRGRVYERLVNTRSLLAGSRKPSDPCDEALIRLGQDGLTRVESA 106

Query: 103  VSNIQRLLELA--RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID--- 157
            +    + +             +L  +         ++     A  +     LA  +D   
Sbjct: 107  LDAFDKAVITTTHEFASRMLVELGVLSDHDPSSVLMTDLTPLATEVSDDHYLARYLDCDH 166

Query: 158  -----IIETEEKKWEDLHALKNEKYGMWWLLAADFL---KIASKYWTERLVELNASSPVG 209
                             +            ++A  L   +   K   +R       +   
Sbjct: 167  PPSVREKRELSCDVAVKYGEVPISSKEDMQVSAQDLMWAQSVRKDVRKRSRLRALHTFDD 226

Query: 210  YQIALMRAEAEHLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                L+ A  +                 +++     + P     +         + +   
Sbjct: 227  LISDLVDALRDSDRGPLACATLANRFRLVMVDEFQDTDPLQWETLQRA--FHGHSNLWLI 284

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ--YSLAKLLDFLDIKREDVKRLGNVSNE 319
             D       +      +    + + +Y  H    Y   K +           +LG+    
Sbjct: 285  GDPKQSIYAFRGADVHAYQDAAQSASYVLHLDVNYRTDKTIVEAINTLFGSAQLGHGIPM 344

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                +           T+    +   +       +  ++V L    ++R     +   + 
Sbjct: 345  GSVTARHQESRIATAATNGPHYSW-SQPFQIRCIQAPANVRLDTTASDRLVTEDLVNQVI 403

Query: 380  MSLD--------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            M L+                    A++   R     +   L++       S  + + ++ 
Sbjct: 404  MMLEGGTVVTDDDGEVRPLRPNDIAILVRRRRRGAELAAALSQAHQPAVFSGALSVWSSQ 463

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
             +  L +LL A+    D      L    L      +   S        +A+   + S   
Sbjct: 464  AADDLVTLLEAL-DNTDERLRTRLCLSDLIGATPADLAASD-SRVRSDLAIDLARWSSTW 521

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
                       A  + +           E        +             +        
Sbjct: 522  TMTGVWGTIEAALHRPDVLTRLVSMTGGERYVTDLRQVAQK---------AHIAACKGML 572

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
               + + W +      +            L  +++  T+       I     +    +  
Sbjct: 573  TATATAAWIR------EQQQQAGDDDPRRLDSDQQAVTI-----MTIHEAKGLGFPVVLL 621

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
             DI +     +++   +        +  + S+  +    +     +            L+
Sbjct: 622  PDIASAWAPKKSISGPVVWHDGQRRVLDISSQGADRAIAVESHEEDERGENLRLLYVALT 681

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
            R  +S + L  +      +   F+             L           WL       G 
Sbjct: 682  RA-RSAVRLWWSPCPQRHSWSAFQRLVEMDRATGKLGLGNAGTVPGTFPWLN-----SGP 735

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPH-YKRPKPFPPLEAQPRTYSF---SEIKQLIND 781
                      +C              P    RP     +       +    + +  L N 
Sbjct: 736  IATAIAPANQRCLTPTATTQSRARVVPRTLTRPVDTAFVRTSYSGLTADLHAAVPTLANT 795

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
                        D  P     P  T  G+L H ++       I+ +  +++  +  I   
Sbjct: 796  LIDEPVDDKSVDDTAPGLCGLPGGTSFGSLVHAVLE-----YIDTSATDLSAEVLAITRR 850

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEE--KIQSSIEKI--FVNIPAKMA------- 890
                  LP            ++ HS L         +          +  ++A       
Sbjct: 851  TLRTSPLPDVPPADLAAGLEQVLHSDLGSLAPGMTLADFSPADRLAEMNFELAMSQSGGS 910

Query: 891  -------------------------------IESIGIHLTGF----ADRIDLLKSGFVDI 915
                                           I +    L GF     D +     G   +
Sbjct: 911  ATMADLASPLCDPSLVPPDDPISGYGKMLVHIPNGNQALHGFLTGSIDAVLRRPDGRYLV 970

Query: 916  TDYKTGDNPKKETA---------------QKLIDPQLSLEAAALKAGSFSQIDCRKVA-- 958
             DYKT   P                          Q  L +AAL     S       A  
Sbjct: 971  VDYKTNRIPGVSKLTPRMYDAHTMRAMMFSSHYPLQGLLYSAALHRFLASSHPGYDPATH 1030

Query: 959  ----NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNL 994
                   ++R      I         ++     EL E   + L
Sbjct: 1031 LGPIGYLFVRGMAHRPISDGDMSDGVFTWHPKPELIEAISERL 1073


>gi|258591644|emb|CBE67945.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 387

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 70/183 (38%), Gaps = 13/183 (7%)

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
           YS S +    + P     R I ++       +       G+  H  +  L +       P
Sbjct: 18  YSASRLSTYESCPLQYRFRYIDRIHRTEESIE----AYLGSRVHEALNALYRTLQLGGEP 73

Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHL--FHKISHS-FLEHEEKIQSS--IEKIFVN 884
            ++ L+K+      ++ +    I    R +  + ++     + + +  Q     + + + 
Sbjct: 74  SLSDLLKEYHWQWGQRWHNQVKIVKQDRSIDSYKELGERCLVNYYQAHQPFNHGQILGLE 133

Query: 885 IPAKMAIESIG-IHLTGFADRIDLLKSGFVDITDYKT-GDNPKKETAQKLIDPQLSLEAA 942
                +++  G   + G+ DR+  + SG  +I DYKT G  P        +D QL+L   
Sbjct: 134 YHVATSLDPHGCYKIQGYIDRLVSVGSGRYEIHDYKTSGRLPS--QGDLDVDRQLALYQL 191

Query: 943 ALK 945
           A++
Sbjct: 192 AIE 194


>gi|308176361|ref|YP_003915767.1| ATP-dependent DNA helicase PcrA [Arthrobacter arilaitensis Re117]
 gi|307743824|emb|CBT74796.1| ATP-dependent DNA helicase PcrA [Arthrobacter arilaitensis Re117]
          Length = 792

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 57/558 (10%), Positives = 142/558 (25%), Gaps = 92/558 (16%)

Query: 189 KIASKYWTERLVELNASS------PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
               + +T RL   NA         V Y        A++  +     ++I     +  A 
Sbjct: 192 SEVYRGYTRRLRAANAMDFDDLIGQVVYMFRAFPRVADNYRR-RFRHVLIDEYQDTNHAQ 250

Query: 243 ARLMSTVANHPNGA---IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
             L+  +           +    D       +     ++            +P  +  KL
Sbjct: 251 YSLVRELTGVEGDTTPGELTVVGDSDQSIYAFRGADIRNIIDFEK-----DYPNAATIKL 305

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
                  +  +     V      R+                     + K+         +
Sbjct: 306 EQNYRSTQTILSAANEVIKRNPDRN---------------------DKKLWTASGDGEKI 344

Query: 360 ALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDIS 416
                ++E +EA  IA  +    D+        A+       +R ++ +L R  +   + 
Sbjct: 345 TGYVGESESDEARWIAEEILRLNDDDEVRPGDVAIFYRTNAQSRALEEQLMRVDLKYRVV 404

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
            G             + L A+   +D + +  ++  P                       
Sbjct: 405 GGTRFYDRKEIKDALAYLRALVNPDDDINVRRILNEP----------------------- 441

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                    +  ++        +++         R S+E   L    +      ++ +  
Sbjct: 442 ------KRGIGDRAEGAVAALAERDRISFMDALRR-SDEAPGLGTRGIKMTAAFVSMMDD 494

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
            KT    +    ++    + T          + +    +    E   +   +      G 
Sbjct: 495 LKTVAEGSGPAEALEAVLEQTGYLETLRLSSDPQDESRVENLAELVAVVRDYVNDEPEGG 554

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSST----LFILGTLESRLLNFDTLILGGLNEG 652
                    +      I       +    +     + ++    ++ L F  + L G+  G
Sbjct: 555 LEGFLERVALVADADQIPEAPSDDEGAAMAAQEGVVTLMTLHTAKGLEFPVVFLTGMEHG 614

Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTI 711
           V+P   +              +   ++   +    +      R  L  TR+ + +     
Sbjct: 615 VFPHQRS--------------MTDEKELAEERRLAYVGLTRARERLYLTRAEQRSLWGQA 660

Query: 712 ----ASRWLQRLLVLGGT 725
               AS++L+ +      
Sbjct: 661 QYNPASQFLEEVPSELID 678


>gi|159900168|ref|YP_001546415.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893207|gb|ABX06287.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 641

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 73/688 (10%), Positives = 175/688 (25%), Gaps = 115/688 (16%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  ELR+   ++ GK+S  L    +   +  +     +            I   
Sbjct: 54  VTFTNKAASELRTRLRDLLGKRSRGL-TAGTFHAICGKLLRQHINGRIRNYTANFTIYAG 112

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            E  +L+    +     +                     A  + ++I   ++  +     
Sbjct: 113 DEQLQLVQQAMDGYTGRMPHDLE----------------APQVLNLISRFKSRMQPPTLA 156

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----K 224
             + ++    +            + +  +L   NA       +   +   EH       +
Sbjct: 157 RQMASDPVSQYAAA-------IYRTYQRQLERSNAVDFDDMIVMTYKLLFEHHDVLDEVQ 209

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVAN--HPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
                +++     +  A   L+  ++         +    D       +        N  
Sbjct: 210 SRWAHVLVDEYQDTDSAQYALLELLSRPVAQRPRSLFAVGDAQQSIYGFRNADYTIINRF 269

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
           + +      P+  + +LL                      RS                  
Sbjct: 270 TRDF-----PEAQVVELLTNY-------------------RSRQEILDAAYAVMRHSVAV 305

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLAR 400
             L  K          + + EA ++R EA +IA ++   L   ++    A++   R+++R
Sbjct: 306 PALTLKAARRSPPVPALVINEATDDRAEADAIAKSIGNLLSTGRRSKDIAILYRSRHMSR 365

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            ++  L +  I   +                + L  I   +D +++  ++  P       
Sbjct: 366 GLETALRQARIPYSLKGQAGFYDRRVIRDALAFLRIIANPSDSLSMNRIINVP------- 418

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                                +  I  L S                     LS+   ++ 
Sbjct: 419 ----------------ARGIGASTIAHLTSKAAALELPLGEALLKREAWEGLSDRASQMV 462

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
                 +             +    G+       +  +             +   W + E
Sbjct: 463 SDWARKVY----------RWRKLASGSYPPEGLLQTVLQ-----ESGYQSMIEKDWNDPE 507

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
                +   ++        +     +    + I   T     ++   + +L    ++ L 
Sbjct: 508 RSDALAHLEELRVAAGEHTS-----LAAFLQEIALLTNVEDKDERDAVQLLTIHGAKGLE 562

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIY 699
           +  + + GL EG  P   +              L  A     +    +         L  
Sbjct: 563 WPIVYVAGLEEGTLPHERS--------------LVEAGGVEEERRLCYVALTRAGEQLYL 608

Query: 700 TRSLRENNIPTIASRWLQRLLVLGGTDF 727
           + + +        SR+L  +LV G    
Sbjct: 609 SHAKKRQRNQRNPSRFLDDILVYGRERA 636


>gi|16082036|ref|NP_394460.1| DNA helicase II (UvrD) related protein [Thermoplasma acidophilum DSM
            1728]
 gi|10640315|emb|CAC12129.1| DNA helicase II (UvrD) related protein [Thermoplasma acidophilum]
          Length = 885

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 127/424 (29%), Gaps = 74/424 (17%)

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            + I +++I    +         +    + +L   +++ L FD +I          K +A 
Sbjct: 487  DLINYLEICDDEVQEI------DADERISVLTVHKAKGLEFDHVIYLP-KAKKDEKMSAV 539

Query: 661  NPFLSRVMQSDLNLK-TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            +    ++++       + +        DF        +  TR+ +   I +   R+L R 
Sbjct: 540  DLVAEQMIRLKTGRDISVDLEDEDTRVDF--------VAITRAAQNLVIVSDDERYLNRF 591

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------- 770
              + G     +     + Y D  R+      +   K        E + R           
Sbjct: 592  -SMKGGSITASTSTMSKDYYDIKREPYLAFVRGDLKHASDMIHEEGRIRKLIYSGIRKNN 650

Query: 771  --SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              SFS +  L  DP+      IL L               GT  H+I             
Sbjct: 651  VISFSLLASL-EDPFRFLKDHILGLK------YTSPAMGFGTSIHSIAQ----------- 692

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                     + + + + E +P  +   + ++   I         +    + +I   +  K
Sbjct: 693  --------DVFEGNVQAEQIPERLRPYYWNIL-NIMKKI-----QDVYGMSQIGSELEVK 738

Query: 889  MAI-----ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
            +       E+    L G  D +         I DYKT     ++ +      QL+     
Sbjct: 739  IPGSAYMREADAFILYGRIDAVFSDGE-KYLIVDYKTDK---RKNSGNHYGDQLAFYRML 794

Query: 944  LKAGSFSQIDCRKVANL-FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
                  + ID  +V     YI L+       I  D   Y  ++   K    + + V    
Sbjct: 795  YSKA--NHIDPSRVKTAIAYIGLRPGVNTGRI--DWDLYPMEKNDSKIRDLIRKYVQYCT 850

Query: 1003 NGEQ 1006
            + E 
Sbjct: 851  DPEA 854


>gi|121999202|ref|YP_001003989.1| UvrD/REP helicase [Halorhodospira halophila SL1]
 gi|121590607|gb|ABM63187.1| ATP-dependent DNA helicase UvrD [Halorhodospira halophila SL1]
          Length = 725

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 58/652 (8%), Positives = 156/652 (23%), Gaps = 106/652 (16%)

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +++  + A L   ++    D    +      +     +      + +   I   + E ++
Sbjct: 98  LRQHAQRAGLPEGFQILDADDQLRVVKRVLRARGNDESRFPP--RQVRGFISARKEEGER 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
             D+     +            L      + +              +       +     
Sbjct: 156 PSDVTEAGGD--------YQQELLAVYHDYEQACRRGGLVDFSELLLRAYELLRDDPELL 207

Query: 226 -----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    I++     +     R +  +      + +    D       W     ++  
Sbjct: 208 GHYQRRFAHILVDEFQDTNALQYRWLKLLGG--EQSELFVVGDDDQSIYGWRGARVENIE 265

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                            + +  + + R +       +       ++   S          
Sbjct: 266 --------------HFRREMGDVRVVRLEQNYRSTGTILDAANRLIEHNSGRLGKQLWTD 311

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN 397
                             + L  A NE +EA  +   +R   +E        A++     
Sbjct: 312 GWSG------------EPITLYAAFNEVDEARWVVDRIRQLSEEGGYGHADFAILYRSNA 359

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +R ++ EL    +   +  G+            + L  +   +D  +   +V  P    
Sbjct: 360 QSRALEHELHAARLPFRVYGGLRFFERAEVKDALAYLRLVANRHDDASFERVVNTPPRGI 419

Query: 458 GFPEKYLSR-AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
           G       R A    ++   R  +       L +   + +A+          +       
Sbjct: 420 GAKTVDAVRYAAREADVSMWRAARELTGSRALAARARNALASFLERIDALDSELTD---- 475

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                 L D + Q I      + ++       ++ +      T  Q              
Sbjct: 476 ----RPLHDQVEQVIARTDLRRHHERDEARLENLDELVTAARTFAQR------------- 518

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                                 + +       +T            +   ++ ++    +
Sbjct: 519 -------------------DEPEDDLDPLAAFLTHAALEAGEGQADDWEHSVQLMTLHSA 559

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR- 695
           + L F  + L G+ EG++P                ++++   +   +    +      R 
Sbjct: 560 KGLEFPVVFLVGMEEGLFP--------------HRMSVEEPGRLEEERRLCYVGMTRARQ 605

Query: 696 HLIYTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            LI T + +      +     SR+L  +      +    +  R         
Sbjct: 606 RLILTHAEKRRLHGMDQLARPSRFLTEIPGEHLEEVRPRMSVRRGPPSVPAS 657


>gi|27383198|ref|NP_774727.1| hypothetical protein blr8087 [Bradyrhizobium japonicum USDA 110]
 gi|27356372|dbj|BAC53352.1| blr8087 [Bradyrhizobium japonicum USDA 110]
          Length = 865

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 84/774 (10%), Positives = 196/774 (25%), Gaps = 92/774 (11%)

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
           +  +     S+  T           L +    + E V+ L  ++      S  +   +  
Sbjct: 22  LAARLAGGFSAPVTLEQLEHAIQRALDEGNFAELESVRHLPGMTR---AVSRSLRMVWDA 78

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393
               D + T    + +  I++         A    +  I+    +R +       +    
Sbjct: 79  GIRLDGKQTAARLDDLALIEQRVRHHLPGTAMLPHDLRIAAIARIRFAPRLVGSVTIERL 138

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
           +      R  +      + ++  A     T   S  +        + +         +H 
Sbjct: 139 SFIAPNWRPLILALAEHVPVEWRAPDCAETHWFSGPIVRHEADHCEPSTTAVSCADPRHE 198

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
           +       ++  +   + +         S +           +       H  H    L+
Sbjct: 199 VV---ESLRWARQLITSGKARPHEIAIASANTTAWDDHFYAAVTDSGLRLHFVHGIPALA 255

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL------- 566
             D + A  L D +L  ++     +          ++    +  ++ +            
Sbjct: 256 TRDGQRAAALADVLLHGLSQSRVRRLASLCRGEGDALDQLPRGWLSSIPRGAALVRIEDW 315

Query: 567 ---------------DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI----KANAIEWID 607
                               +P L    +G   +   ++++  G        A      +
Sbjct: 316 CRAISTAVLDDESSIGLRAAIPILEVLGKGIAAAREAAELVLRGRSAQLWQTALRTGPPE 375

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            I   +       + + + ++                 L GL    WP+ + ++  L   
Sbjct: 376 AIEFALQSARFPSEFDAADSIAWTTARILANAPRPYARLLGLTNRAWPRRSGEDSILPNH 435

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
           + S               H   +     R ++ +RS R      +    L R        
Sbjct: 436 VLSSSEFDVDPTARADRRHFDAIVTGAAREVVLSRSRRSAQGSRVGRSPLLRDRPETPLS 495

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ-------------------- 766
                +           +     K               +                    
Sbjct: 496 RARIPEHAWNEADRLMARPADAVKIARIGSANACWTSWHEERLTPYDAQFSAEHPAMRQA 555

Query: 767 -PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD--RTDRGTLFHNIITEL---- 819
             R  S + ++ ++ DP A   R  L        ++         G L H ++       
Sbjct: 556 IERVQSATSLRLMLRDPMAFVWRYALGWRTPQDREQPLSIAPDAFGRLVHELLRRAVDLL 615

Query: 820 -----IKKRINKNTPEINHLMKQIIDSHFEKENLPPH----------------IDIIWRH 858
                  +  ++          +++   +  E   P                 I ++ + 
Sbjct: 616 EPRPGYARASDQEIETALEQAARVVREAWPLEGPVPPSLLWRNTVDYAVSLAMIGLLRKE 675

Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES----IGIHLTGFADRID-LLKSGFV 913
           +    + S+ E E   +         +P    +        I L G  DR+D   +    
Sbjct: 676 IAEATTRSWTEVEFGQRDDF-FAGRELPWDATLPVCMPNTPIRLRGTIDRLDLRTEPTAA 734

Query: 914 DITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
            +TDYKT + P+           + Q +L     +       + + VA L Y+R
Sbjct: 735 RVTDYKTSEPPRNVQRMSIGGGSELQRALYGLVCRQ--LLPGEPQIVARLLYLR 786


>gi|28897857|ref|NP_797462.1| putative ATP-dependent DNA helicase [Vibrio parahaemolyticus RIMD
            2210633]
 gi|153838039|ref|ZP_01990706.1| UvrD/REP helicase [Vibrio parahaemolyticus AQ3810]
 gi|260877018|ref|ZP_05889373.1| UvrD/REP helicase [Vibrio parahaemolyticus AN-5034]
 gi|260899090|ref|ZP_05907531.1| UvrD/REP helicase [Vibrio parahaemolyticus Peru-466]
 gi|28806070|dbj|BAC59346.1| putative ATP-dependent DNA helicase [Vibrio parahaemolyticus RIMD
            2210633]
 gi|149748573|gb|EDM59432.1| UvrD/REP helicase [Vibrio parahaemolyticus AQ3810]
 gi|308089138|gb|EFO38833.1| UvrD/REP helicase [Vibrio parahaemolyticus Peru-466]
 gi|308093677|gb|EFO43372.1| UvrD/REP helicase [Vibrio parahaemolyticus AN-5034]
          Length = 1139

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 89/927 (9%), Positives = 234/927 (25%), Gaps = 146/927 (15%)

Query: 2    HNKKPNVFTIAPSSPFFREMI---PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQ 58
            H  KP +    P +   + ++     LL+  +                + I   + +A  
Sbjct: 207  HRGKPYLLEAGPGTGKTQTLVKRVEGLLDEGVDPR------------RILILTFSNKAAG 254

Query: 59   ELRSEFIEIT--GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
            E+             S     I +      +                    RLLE    +
Sbjct: 255  EMAERLASKNKEAVASMW---IGTFHAFGLDLVRRFYSELG-----FEKEPRLLERTEAV 306

Query: 117  LIWRNKLPDIIKDLYPE--SPLSLPISPANAIWLA-KNLADIID--IIETEEKKWEDLHA 171
                ++ P +  + +     P     +  +AI  A   + D  D   +  E     D   
Sbjct: 307  EALEDEFPRLGLEHFRNLYDPTEHITNLLSAISRAKDEVVDHRDYFRLAQEMLDSAD--- 363

Query: 172  LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK---- 227
                +      L A  +    + +                +  ++    ++         
Sbjct: 364  ---TEESKTAALKAKEVATVYEAYERLKRAKGCIDFGDLVLLPVKFLENNVELFKHFQSL 420

Query: 228  -GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
               +++        ++ RL+  +     G  +    D       +   +  S +   +  
Sbjct: 421  YDHVLVDEYQDVNRSSIRLLMLLCG--EGENLWAVGDARQSIYRFRGASSVSMSRYCTQD 478

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
             + T  Q  L       +       +     +   G   +I+         + +  +  +
Sbjct: 479  -FPTALQGRLKINYRSSEEIIRAYSKFAFDMSANIGSPELIADRGETGCLPEFKVVEKAD 537

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKL 404
                                  ++A+ +A  ++   +   + +  A++ +      ++  
Sbjct: 538  ----------------------DQAVVLAETIKDMQESGYSYRDQAVLCSGNERLSQLAE 575

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
            +L   G+ +       L        + S L+ +        +  + + P  +    +  +
Sbjct: 576  QLELLGVPVLYLG--SLFEREEVKDMFSFLSLLTDSW-GSGLVRIGRWPEFELSLEDLDV 632

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                N L            D  D+  +                   +     K LA L+ 
Sbjct: 633  --ILNHLRTERCEDKGWLLDSQDITGISSSGKEALSKLGWTFEGIDKTDHPWKVLATLIF 690

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
            D             +++  +  N SI+ W                               
Sbjct: 691  DKTRIA----ARLSSSEVVSDKNRSIAIW---------------------------QLMN 719

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDG----ETVKPKIEKSSTLFILGTLESRLLN 640
                +   ET S +    +         +        +    +    + ++    ++ L 
Sbjct: 720  FVRTAISAETASGLPVTRLLERVRRLLRLGDDKDLRQLPASAQSIDAVRLMTMHGAKGLE 779

Query: 641  FDTLILGGLNEGVWPKN------TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            F  + L G+++G  P+             ++    + + +  AE    Q    +   +  
Sbjct: 780  FKVVHLPGMSQGTLPRTYQKPACEPPFGMITGEDDTSVTMLKAEHEKEQECLFYVSMSRA 839

Query: 695  RHLIYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
            +  ++    + + NN     S ++ R+     T             +D    +D    + 
Sbjct: 840  QDKLFMYAPAKKSNNSQWKHSPFISRIQDKVRTSNVVETYN--LPRIDLDTDMDIAVDRD 897

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                             +  + +      P       +LK                    
Sbjct: 898  FI---------------FESNHLGLYQQCPRRYLYTHLLKTGGKRTKTSYVK-------L 935

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H+ +  ++++ + +   E    +K +++S      L  H  I           ++     
Sbjct: 936  HDAVRFVVQRHMEEGFDESE--LKSVVESALAINGLSEHGYIKEFTDLACSMSNYFVSSR 993

Query: 873  KIQSSIEKIFVNIPAKMAIESIGIHLT 899
            K            P  + +    + + 
Sbjct: 994  KSMEKATIS----PITLELGGEKVIVR 1016


>gi|139439548|ref|ZP_01772980.1| Hypothetical protein COLAER_02007 [Collinsella aerofaciens ATCC
           25986]
 gi|133775101|gb|EBA38921.1| Hypothetical protein COLAER_02007 [Collinsella aerofaciens ATCC
           25986]
          Length = 966

 Score = 75.3 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 68/765 (8%), Positives = 168/765 (21%), Gaps = 154/765 (20%)

Query: 46  SVTIYVPTKRAIQELRSEFIEI--TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            V     T +A  E+R     +  +G +      + +   +       D  L        
Sbjct: 108 QVLAITFTNKAAAEMRERLAALIPSGTRGMW---VCTFHAMCVRMLREDADLL------- 157

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                   +        +    +++D+     +     P N       +   I   +   
Sbjct: 158 -GYTGQFTIYD-----DDDSKRMVRDIMQALGIEQKQFPINM------IRSKISSAKNAM 205

Query: 164 KKWED-LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
              ED L +  +                       RL   NA       +  +       
Sbjct: 206 IGPEDMLKSADSPNDKKAAQ--------VYLELERRLRAANAMDFDDLLVRALELLRTRP 257

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     I +     +      + + +A      +V+   D       W      
Sbjct: 258 EVLDKYQERFRYISVDEYQDTNHVQYEIANLLAAKYQNLMVV--GDDDQSIYSWRGADIT 315

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +            K    + +++        +S           +      T+
Sbjct: 316 NILDFEKDF-----------KNCKTVKLEQNYRSTGHILSAANAVVRHNSQRKDKRLFTA 364

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITAD 395
           +                    +   +A +ER+E   IA  +        +    A+    
Sbjct: 365 EGDG---------------EKIQAFQASDERDEGRWIAGEIEKLHAKGTSYDDIAVFYRT 409

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++    R G+   I  G           + + L  I    D M++  ++  P  
Sbjct: 410 NAQSRILEDMFLRAGVPYKIVGGTRFFDRAEIRDVMAYLKMIVNPADEMSVKRVINTPRR 469

Query: 456 KFGFPEKYLSRAKNALELV------------------------------ALRGNKNSYDI 485
             G                                                 G +   ++
Sbjct: 470 GIGSTSIQKIEQLARDNHCSFFQACEIACAETGMFSAKVRNGLSSFVSLVREGRRMDGEL 529

Query: 486 MDLKSLVLD----RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
            D+  +++D      A +   T     ++   +E   +A    +        L + +  +
Sbjct: 530 KDVVEMIVDKTGLLQAFRAEGTMESESRAENIQEFLGVAAEFEETHEDIEGTLESLEELR 589

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI--- 598
            +   ++      +  V               +       +  +            +   
Sbjct: 590 AAGVADVPAGAEPEPVVVSAPAPEPGPSAPASSFEALVGARDAAGSNPLDRLAAPALSPQ 649

Query: 599 ---------------------------------KANAIEWIDIITRLIDGETVKPKIEKS 625
                                                     ++  L     +     ++
Sbjct: 650 DALAAAIAGNAYAAPTEMPAGAVHADEIERTYGPLTCKALPALMEWLALRSDLDSLAGET 709

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
             + ++    ++ L F  + + G+ EG++P                       K   +  
Sbjct: 710 HAITMMTIHSAKGLEFPAVFVAGMEEGIFPHVHDFG-----------GSDDPGKLEEERR 758

Query: 686 HDFEMANGTR-HLIYTRSLREN----NIPTIASRWLQRLLVLGGT 725
             +      R  L  T +              SR+L  +      
Sbjct: 759 LAYVAITRARKRLFLTYAATRRTYGSTSANPRSRFLNEIPFEDIE 803


>gi|325261823|ref|ZP_08128561.1| ATP-dependent nuclease subunit A [Clostridium sp. D5]
 gi|324033277|gb|EGB94554.1| ATP-dependent nuclease subunit A [Clostridium sp. D5]
          Length = 1263

 Score = 75.3 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 91/870 (10%), Positives = 212/870 (24%), Gaps = 175/870 (20%)

Query: 213  ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-VLPGLDCHIPTAIW 271
             L+ + +    +     ++I     S      ++++V+    G   +    D       +
Sbjct: 411  KLVPSLSAAEYQDQFLEVMIDEYQDSNLIQEAILTSVSTVSRGRNNIFMVGDVKQSIYRF 470

Query: 272  NTITEKSTNITSSNTTYSTHPQYS--LAKLLDFL--------------------DIKRED 309
                 +         +     +    L +                          I  ++
Sbjct: 471  RLSRPELFMEKYDTYSQEDSDRQRIDLHRNFRSRDEVLGSVNFIFEQIMRKELGGILYDE 530

Query: 310  VKRLGNVSNEMYGR--------SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
               L   ++                +       D     ++   E+K  +          
Sbjct: 531  QAALYPGASYEPQLDEQGKSINQAELILVDTSDDHEAGESSQTGEDKAADAGAEEGRTTE 590

Query: 362  IEADNE------REEAISIAIALRMSL--------------DENKKKSALITADRNLARR 401
             +A           EA ++A  ++  L                  K   ++T        
Sbjct: 591  TQAARPSAGTGREREARAVARRIKELLKYGRVLDKASGTYRAPRYKDMVILTRSIKGWAD 650

Query: 402  VKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            V    L   GI     +      T   S+L   L  +      + +  ++  P A     
Sbjct: 651  VFAAVLGEEGIPAYAGSREGYFETYEVSVLLDYLRILDNFMQELPLTAVLTSPFAGLNVQ 710

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
            +    R                  I   +++     A +                     
Sbjct: 711  QLADIRNA-------------FPGIPFYEAVQKYADAAEGGGV----------------- 740

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
              L   + + +  L  ++     T  +  +    + T   L    +    +      E  
Sbjct: 741  --LQRLLREFLQELEHFREMVPYTAIHELLWHIIEDTGYGLYIASMPGGAQ-----REAN 793

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITR-LIDGETVKPKIEKSSTLFILGTLESRLL 639
             + L    S    T      N + +I+ + +  +D        E+S T+ I+   +S+ L
Sbjct: 794  VEMLVEKASAFEGTSYKGLFNFVRYIEQLKKYDVDYGEANIADEQSDTVRIMSIHKSKGL 853

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSR---------VMQSDLNLK-----------TAEK 679
             F  + + G+ +    ++T  +  +            ++    +            T E 
Sbjct: 854  EFPIVFVCGMGKQFNTQDTKGSIVIHPEWGVGIDAIDLEKRTRIPTILKKVIQEEITREN 913

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
               +    +      +  +       + +  +      +            +    + YL
Sbjct: 914  LGEELRVLYVALTRAKEKLIMTGELPHALEVLEQNGAGQTTGGRKEPLPYYVLSGARTYL 973

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY-----ARRILKLD 794
            DW   L     +              +    +  + + L  D    +       + L+  
Sbjct: 974  DWLLPLIPRLTEQIPLEVLVADCFAEEAAETAGQQAESLARDVLEHWNTENIYDKELRES 1033

Query: 795  FIPHFKKDPDRTDRGTL----------------------------FHNIITELIKKRIN- 825
                 +        G L                               ++ E +K+ I  
Sbjct: 1034 LPGQLEYKYPYEQEGKLKLKFTVSELKKRAYLSEESGEELYEEPEVVPLLPEFLKEEIEL 1093

Query: 826  ---------KNTPEINHLMKQIIDSHFEKENLPPHID------IIWRHLFHKISHSFLEH 870
                         E+     Q  +   EKE +    +      +        I  +FL  
Sbjct: 1094 TGASRGSAYHKLLELLDFSVQYDEIALEKEIVRLQAEGKLSDDMAECIRIRDIL-AFLHC 1152

Query: 871  EEK----IQSSIEKIFVNIPAKMAIESIG----------IHLTGFADRIDLLKSGFVDIT 916
            E        +  + +    P  + +++            I + G  D +   +   + + 
Sbjct: 1153 ESGQRMHRAAQKQLLKKEQPFVLGVDAREIYPGEDSAETILVQGIID-VYFEEDEELVVL 1211

Query: 917  DYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            DYKT         Q+    QL   A AL+ 
Sbjct: 1212 DYKTDKVRTARDLQEKYHSQLDYYAQALEQ 1241


>gi|124514998|gb|EAY56509.1| putative ATP-dependent DNA helicase, UvrD/REP family
           [Leptospirillum rubarum]
          Length = 746

 Score = 75.3 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 82/783 (10%), Positives = 188/783 (24%), Gaps = 120/783 (15%)

Query: 12  APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE-ITGK 70
              S   R +I  LL   L++ + +          + +   T++A +EL           
Sbjct: 26  PAGSGKTRVVIARLL--YLLDRYGWSED------RLLVVTFTRKAARELLHRISRLRPSS 77

Query: 71  KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
           + +    + +   V             +L    + +         + + R+ L       
Sbjct: 78  RPSW---VGTFHSVAARMLRQQAER-LDLPREFTIVD----GPDQLQMIRDLLGRQGVSD 129

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
               P            LA  +       ++               +G + + A      
Sbjct: 130 KEVDPK----------KLAGRIGKW----KSAGVDP---VEAIRTTFGPFRVQA-----E 167

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARL 245
               + + L    A       + L+R   +        +     I++     + P   RL
Sbjct: 168 LYAAYQDNLALQKALDFDDLLLTLVRCLEQDPEVRETYQRQFEHILVDEYQDTNPLQERL 227

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           +  ++       V+   D       +                   +P      L      
Sbjct: 228 LRLLSRDRQNVTVV--GDDDQSIYRFRGAEVGHILSFPKE-----YPGARQVVLTVNYRS 280

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
            R  V    ++ +    R                         + +  +    V L + D
Sbjct: 281 TRPIVTAASSMISSALARYRK---------------------DMVSTGRPGEPVFLKKLD 319

Query: 366 NEREEAISIAIALRMSLDEN--KKKSALITADRNLARRVKLELTRFGINID-ISAGIPLS 422
           +E  EA  +A  ++  ++     +   ++      A+         GI      A     
Sbjct: 320 SEWAEARFVARTIQEKVERGAMFRDQVVLFRMNVQAQPFIRAFAEAGIPFQTRGAVQGFF 379

Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
                  L + L       D +++  ++  P    G   +                    
Sbjct: 380 NRREIRDLLAYLRVSANPFDRISLGRILNVPPRGMGEKARERLD--------------QQ 425

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                L S  L    + + +          + + +E +      + +   P    +   +
Sbjct: 426 AGNPGLSSWELLERLSLELSGKARESARAFANDLEEASR----RVRRGDGPFSLLQFWLS 481

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
            T     +S               +          EE  K L  +  +  +    +    
Sbjct: 482 RTGYEQWVS---------------EGESGEEGPGREENLKELLRMSERFGDGIGELTDRT 526

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
              + +    +  E      E    + +L   +++ L F  + L G  E + P  +    
Sbjct: 527 PTGVFLEELALSQEDPGEAGESPDRVSLLTIHQAKGLEFPHVYLAGAEEDILPMKSRDKV 586

Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
            +             E+ +   A      +       TR L         SR+L+ +   
Sbjct: 587 DVEE-----------ERRLFYVAMTRARDSLAITWCLTRQLFGRTESPRPSRFLRDIPPE 635

Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
                    +         +         P    P   P    +      +     +  P
Sbjct: 636 AVQGDRPVFRPETPVSRQTSELPPRKVFPPPSLAPS-RPATSLRSVPEKRTSPPTEVLRP 694

Query: 783 YAV 785
             +
Sbjct: 695 EWI 697


>gi|187928127|ref|YP_001898614.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|187725017|gb|ACD26182.1| UvrD/REP helicase [Ralstonia pickettii 12J]
          Length = 1173

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 77/770 (10%), Positives = 181/770 (23%), Gaps = 56/770 (7%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTG 237
               D L    + +  +   ++ +        LM      A  +  +      +++     
Sbjct: 363  ALGDALIDRYQAYKRQTRAMDFTDLEWEAARLMQQDDTAAYLQVRLDARYKHLLLDEFQD 422

Query: 238  SIPATARLMSTVANHPNGA----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---- 289
            + P   R++        G      V    D       +     +  +             
Sbjct: 423  TNPMQWRILQGWLAGYAGTGTQPSVFLVGDPKQSIYRFRRADARLFDAAREMLVAEFNAT 482

Query: 290  ----THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                   + +   +L++++      +  G+        + V +          +   +  
Sbjct: 483  VLRTNRTRRNAPAVLEWVNAVFLQARARGDYPIYAEQSTAVDAPVGKALLLPLVPVLEAE 542

Query: 346  ENKIPNIQKCFSDVALIEADNER-EEAISIAIALRMSLDENK------------KKSALI 392
                   +   ++      D++R  E   +A  LR      +                L+
Sbjct: 543  RVDETTPRDTLTEPREEAGDSQRYAEGRQVAACLRALHASERIREGGVERSVRWSDFQLL 602

Query: 393  TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
               +      +  L   G+         L  TL +  L +LL+ +      +++A +++ 
Sbjct: 603  VRRKRYLADYERALRDAGVPYLSPRRGGLLATLEALDLCALLDFLMTPQADLSLAHVLRS 662

Query: 453  PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
            P+                       G         L +L     A+   +         L
Sbjct: 663  PVFAATDDHLIALA-------QFGEGTLALTWWERLTALAGQADASDTFHYAHRMLSRWL 715

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
            +         L+DHI+        Y     +   +  +++        L           
Sbjct: 716  AVAPTLPVHDLLDHIVYTGELKRRYAERAPAANRDQVLANLDAFLKLALDLDGGRYPSLP 775

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
              +      +      S          A      ++ +  +D   +              
Sbjct: 776  KFMAELRAIRQGDEDESPDEGMQGDTDAPDAIDAEVASEGLDAAQILTVHASKGLEAPFV 835

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
             L     +   +   G+     P   A   F +    S+  L  A   + +  HD   A 
Sbjct: 836  VLLDSHHSDARVDTAGILIDWPPGAQAPTHFSAFGKTSERGL--ARDPLFKQEHDL--AE 891

Query: 693  GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
                 +   ++       I S    +          +           W   L       
Sbjct: 892  RENWNLLYVAMTRARQALIVSGVANKRDAAAAQSVDEGDAPEVDGTASWYTHLATAGVAS 951

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK---DPDRTDRG 809
                                         P  V  R                D     +G
Sbjct: 952  PAPMVDGAADSADNAAGPEAVSYHDF-RAPLTVTVRVGAAGASAEGPADIVFDQGAVAQG 1010

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
             L H ++  L ++ + +  P+   + +    +   + +     D        ++  +   
Sbjct: 1011 ELLHAVLERLTRRGLPEQAPDAETIARWFSATGVTQADATRTADA-----VRRMFSAETL 1065

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
                  +  +     I         G  L    DR+    +  + + DYK
Sbjct: 1066 MHVFDPACFDAAHNEIEL---FAPDGALL--RIDRLIERGN-DILVVDYK 1109


>gi|116334214|ref|YP_795741.1| superfamily I DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116099561|gb|ABJ64710.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis ATCC 367]
          Length = 750

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 71/671 (10%), Positives = 172/671 (25%), Gaps = 115/671 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            +     T +A +E+R   I++ G          + +   +       D       N   
Sbjct: 56  RILAITFTNKAAKEMRERVIKLLGPDGNDVW---VSTFHALCVRILRRD-ADKLGYNRAF 111

Query: 104 ---SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
                 ++   + R++                +     P S   AI  AKN      ++ 
Sbjct: 112 TIADPGEQRTLIKRVLQQ-----------QNLDIKKFDPRSVLGAISNAKNALQTPAMMR 160

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                  +                   +    + +   L    A       +  ++   +
Sbjct: 161 EAAGNPFETT-----------------VATVYESYQRELQANQAMDFDDLIMLTIKLFNQ 203

Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                   +     I +     +  A   L++ +A       V+   D       W    
Sbjct: 204 DADVLGYYQDKFQYIHVDEYQDTNDAQYTLVNLLAKKHGNLCVV--GDGDQSIYGWRGAN 261

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +P   +  L       +  ++   +V      R            
Sbjct: 262 MENILNFE-----HDYPDAHVTLLEQNYRSTKTILRAANDVIQRNVNRK----------- 305

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALI 392
                     +  +         ++     NE +EA  +   ++   ++N       A++
Sbjct: 306 ----------KKDLWTDNAEGEPISYYRGQNENDEAHYVVAKIQEEREQNHHDYGDFAIL 355

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R ++  L +  I   +  G           + + L  +    D M++  ++  
Sbjct: 356 YRTNAQSRVIEETLVKANIPYTMVGGHKFYDRKEIRDVLAYLTLVANPADSMSLERIINE 415

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P    G       R                                  +   +  W    
Sbjct: 416 PKRGIGATSVEKLR----------------------------------DFAEMNDWTELE 441

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD----WTKLTVTCLQNVCLDE 568
           + ++  LA  L   +   +        +       +S+SD        T           
Sbjct: 442 ATQNISLATTLSARVRTAMEKFGLTLKHVQDRAATMSVSDMTSELLDQTGYMASLKASKN 501

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                 +   EE  +++  F    +     +      ++ +  L          E+ + +
Sbjct: 502 LEAETRIENIEEFLSVTQKFDDDWDNADHDE-TEDRLVEFLADLALVSAQDDVEEEPAEV 560

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTA---KNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++    ++ L F  + L GL EG++P + A    +        + + +  A++ +    
Sbjct: 561 TLMTLHAAKGLEFPVIFLMGLEEGIFPLSRAMLEDDELEEERRLAYVGITRAQEKLYLTN 620

Query: 686 HDFEMANGTRH 696
               M  G R 
Sbjct: 621 AYSRMLYGRRQ 631


>gi|188574575|ref|YP_001911504.1| exodeoxyribonuclease V, gamma subunit [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519027|gb|ACD56972.1| exodeoxyribonuclease V, gamma subunit [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 1137

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 103/959 (10%), Positives = 221/959 (23%), Gaps = 121/959 (12%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
            E  R  P  PLL   V + +P     + L+S      G  + +     + G+ V     
Sbjct: 26  QELRRPVPGQPLLQPEV-VLIPQVAMRRWLQSTLAAEHGVAANL--EFLTPGEFVARALE 82

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
            +L  + +     +   RL                    L P +             LA 
Sbjct: 83  RNLGAADDDLDMATTQWRL-------YAALQSDLGRDAALAPLADYLADGDALKPWALAG 135

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            L  + +  +   + W  L                  +                      
Sbjct: 136 ELGSVFEKYQAWRRDW-LLRWEGGADPDDPQARLWRSIA------------TGRQYRARR 182

Query: 211 QIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
               +   A       +G    +         P   R+++T A        LP       
Sbjct: 183 IGHYLDRHARADGPLPQGLPPRVFAFAILNISPDVLRVLATQARVGTLHFYLPTPTQGYW 242

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKL----------------LDFLDIKREDVK 311
             +      +  +               L                   +  L        
Sbjct: 243 GDLQTLRQRRREDGAVQLFAEHVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEITAYAD 302

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
            L +    +    +  S           R    +   +P +      + +        E 
Sbjct: 303 PLDSGRRTLADGGLGDSLLRRMQSDLFHRRAPAVPALLPAVNLHDPSLQVHACHTRLREL 362

Query: 372 ISIAIALRMSLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDISAGI 419
             +   LR  LD+         ++ A+++ + +        +         +   ++   
Sbjct: 363 QVLHDQLRALLDDPRFDPPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYALADAS 422

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY--------LSRAKNAL 471
           PL++   + +  +LL           I  L+                        A  A 
Sbjct: 423 PLASEPLAEVFLTLLGLPIARFGLHEILDLLASAPIAAAAGLDEAGLERLRSWLHAAGAR 482

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
             +     +      D        +                               L  +
Sbjct: 483 WGLDAAHRRQHQAPGDDAYTWRFALDRLLLGHASGADDDIDGVAPWPQLEGSALAALDTL 542

Query: 532 TPLVTYKTNKNS-TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
             L+       +     ++  +W +  +  L+ +              +  +T+   F++
Sbjct: 543 LRLLRVLERHQAVLADAMTPVEWRERLLGLLEALIPTTPTAPRAQRALDRLRTMIDQFAR 602

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
                        E +      + GE+       +  +     +  RLL F  + L G+N
Sbjct: 603 DAVRADYAGKVPAEVVRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRVICLLGMN 662

Query: 651 EGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
           +G +P+             L    +   +  T E         F  A    +L Y  +  
Sbjct: 663 DGDFPRRDPAAGLNRLTAELGTDRRRHGDRSTREDDRFLFLQLFASAQEVFYLSYLGADA 722

Query: 705 ENNIPTIASRWLQRLLVLGGTDFFD-------------------------------NLKK 733
            +      S  +  LL                                           +
Sbjct: 723 RDGSVREPSVLVSELLSSAAHYHAASNALDTLVVRHPLQPFAAAAFGALGDESDAGADPR 782

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS----EIKQLINDPYAVYARR 789
           R      W   +D    Q     P     L A       S    E+++L  DP   + R 
Sbjct: 783 RFSYRRQWRPAVDSLVGQRQPLAPWVAGALPADDTALQASVSIDELRRLFADPAGQFLRH 842

Query: 790 ILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
            L +       +D D        RG   + +  ++ +  +  +T  +   ++        
Sbjct: 843 RLGMRLPDPGGEDSDLEPLLAPTRGLDQYGLQQQVCEAALAGDTEGLYERLRA---RALL 899

Query: 845 KENLPPHIDIIWR-HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                    +  R       + +F +   +  +   +        + ++   I L    
Sbjct: 900 PSGPLGRRQLDERVAQLRPYADAFRQWRGQSPAESRR--------LQVQIGDIELHARV 950


>gi|255326665|ref|ZP_05367741.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa ATCC 25296]
 gi|255295882|gb|EET75223.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa ATCC 25296]
          Length = 990

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 78/668 (11%), Positives = 182/668 (27%), Gaps = 75/668 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R     + G ++  +  I +           +            
Sbjct: 195 GQILAITFTNKAAAEMRERIEALVGPRAKHM-WISTFHSFCVRVLRREAAAL-------- 245

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++    +       +  L  IIK+L  ++              AK + + I  ++ E  
Sbjct: 246 GLKSTFTIYDSTDS-QRLLSLIIKELNLDTKKFT----------AKAVGNRISALKNELV 294

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR--AEAEHL 222
             E   +        +    A    + ++        L+    +G  + L++   E  + 
Sbjct: 295 SAEAYASRVASDN-PYEKTIAQIYTVYTQRLRAA-NSLDFDDLIGRTVFLLKKFPEIANY 352

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +     I++     +  A  +L+  +                   A      +      
Sbjct: 353 YRRKFRHILVDEYQDTNHAQYQLVRELVGAH-----------TKAPADRGPYPDAVPPAE 401

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            +    S    Y+        +I   +       +  +              +    RN 
Sbjct: 402 LTVVGDSDQSIYAFRGADIR-NITDFEKDYPNAHTILLEQNYRSTQNILSAANAVIERNP 460

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADRNLA 399
           D    K+       + +    A++E  EA  I   +    DE+       A+       +
Sbjct: 461 DRRPKKLWTASGAGAKIIGYVAESEHAEARYITREIDRLADEHGVQPGDVAIFYRTNAQS 520

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           R ++  L R G+   +  G             + L A+   +D + +  ++  P    G 
Sbjct: 521 RTLEDMLMRAGLPYRVVGGTRFYERKEIKDALAYLRALSNPDDDVNVRRILNEPKRGIGA 580

Query: 460 -PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
             E  ++   +A  +      + + DI  L +  + + A            +R      E
Sbjct: 581 KSESVVAEYASANRISFYVAARQAADIPALGAAAVKKYAEFVRLMDDLAQIART-----E 635

Query: 519 LAVLLVDHILQCITPLVTYKT--NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            A   ++ +L+    L   +   +        ++S+     V                L 
Sbjct: 636 PAATCLEAVLEQTGYLAALRASKDIQDESRVENLSELLDAMVEFETE--NPGADLEQFLE 693

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                    S+ ++         + A                  + +    + ++    +
Sbjct: 694 HVALVADADSIPNRPASAEGENASAAQI-----------AAEAAEAKAQGMVTLMTLHTA 742

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-R 695
           + L F  + L G+  G++P   A              L   ++   +    +        
Sbjct: 743 KGLEFPVVFLTGMEHGLFPHQRA--------------LTDEKEMSEERRLAYVGLTRAME 788

Query: 696 HLIYTRSL 703
            L  TRS 
Sbjct: 789 RLYLTRSE 796


>gi|107022290|ref|YP_620617.1| exodeoxyribonuclease V, gamma subunit [Burkholderia cenocepacia AU
           1054]
 gi|116689236|ref|YP_834859.1| exodeoxyribonuclease V, gamma subunit [Burkholderia cenocepacia
           HI2424]
 gi|105892479|gb|ABF75644.1| exodeoxyribonuclease V, gamma subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647325|gb|ABK07966.1| exodeoxyribonuclease V, gamma subunit [Burkholderia cenocepacia
           HI2424]
          Length = 1112

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 86/883 (9%), Positives = 197/883 (22%), Gaps = 54/883 (6%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  ALL        R  P  P       + VP+    + L  +     G  + +   
Sbjct: 10  HETLADALLEDLTAFPARNGPWAPQ-----QVIVPSAALRRRLELDIAARNGVCANVEFT 64

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             +       ++    +      P  S       + R   ++            P     
Sbjct: 65  YLA-------QWLWAQIGRVLTVPARSPFAPDRLVWRCYRLFAQAADGAPWLASPRLAAY 117

Query: 138 LPISPAN-AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAADFLKI 190
           L  S       LA  +A ++D   T   +W                       A D  + 
Sbjct: 118 LSASDDAMRYELAHRVAAVLDHYLTYRPEWLAAWQAGESVLAGDAAPRGISDAARDDERW 177

Query: 191 ASKYWTERLVEL-NASSPVGYQIALMRAEAEH---LMKGTKGPIIIAGSTGSIPATARLM 246
            +  W   L EL ++ +P  ++  +     +            + +       P    L+
Sbjct: 178 QAALWRALLAELSDSGTPPAHRFLVEARHLDADAVARADWPESVSVFALPTMPPLHVALL 237

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
             ++   +  +            I      ++ +               LA+       +
Sbjct: 238 RELSRWIDVRVYALNPCREFWFDIVTAAHAEALDAAGRRDYQEVGHP-LLAEWGRQTQAQ 296

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
              +  L   +        V + +            ++              + +    +
Sbjct: 297 LHMLHELTESAASGDASRFVENPAPTWLARVQNAILELQPEADIGDTPVERGIEVHVCHS 356

Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI----------NIDIS 416
              +   +   L    D +                    L                  I+
Sbjct: 357 LARQLEVLHDRLLAWFDADTSLQPSDVLVAVADLAAAGPLIDAVFGTAGAGGARVPYRIT 416

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
              P      + +L   L    +      +   ++       +     +       L A 
Sbjct: 417 GLPPSQANPVARVLLDWLALPERQVGAPELVEWLRVDAVAARYDIDAAALETVQTWLAAA 476

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL---------VDHI 527
              +    +    + V     T  +          + E    +   L          + +
Sbjct: 477 GARRGLSPLASDDAAVPAPRHTFSDALARLFLGYAMPEGAAPIGAWLPIEAATGSEAELL 536

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            +                 + +   W++L    L             L    +   L ++
Sbjct: 537 GRLARFTDDLDGFARRLAESHTPRGWSELFADTLARFFDSGAAYADALAGVRD--ALDAM 594

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
            + + E        A      +T  +D             +        R L +  + L 
Sbjct: 595 LAAMTEGAPDEALPAAVVRAGLTAALDD--PARGGVPWGGVTFSSLTSLRGLPYRVVCLL 652

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLN-LKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
           G+++GV P     + F    +   L   +  +            A     + YT     +
Sbjct: 653 GMDDGVLPSLARADEFDLMAVLPKLGDRQRRDDERNLFLDLLLAARDRLLIAYTGRSIRD 712

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
           N P   +  +  LL     D    +        D            H  +P      +  
Sbjct: 713 NAPLPPAALVDELL-----DHLAIVTAGLGAAPDAVDAARRAFIVEHPLQPFAAAYFQPG 767

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
               S+   +  +    A  A R  +    P F +         +  +      +     
Sbjct: 768 SELVSYDAERATLASLLAAEASRG-EPREQPFFAQPLPAEPVEPVAFSEFERFWRHPARA 826

Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
                  ++     +                 L  ++    +E
Sbjct: 827 LLRGRLGIVLADAQAELLDTEPFALDFAGSDALAERVLPLLIE 869


>gi|218681333|ref|ZP_03529230.1| ATP-dependent UvrD family DNA helicase [Rhizobium etli CIAT 894]
          Length = 299

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 75/254 (29%), Gaps = 19/254 (7%)

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
           H++ + +L +++     + +        G  +     +R     D TR+   + +     
Sbjct: 23  HMMISAALHDDHPHVETTTFSGPDGEWPGIKWRVPRVERSFERADRTRE-RDSEETLPDG 81

Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
             +P PP    PR  S S    +I++                   +     ++G L H +
Sbjct: 82  LLRPLPPQAELPRPLSPSGAGTIIDEDDGGLLIASPLFGEKERSDRSL---EKGRLIHRM 138

Query: 816 ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
           +  L      +     +   ++            P      R          L+      
Sbjct: 139 LQALPDIPPGERRDAASRYAERAAR-------FWPDA---ERRKLVDSVLKLLDERGLQA 188

Query: 876 SSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
               +    +     + +E     ++G  DR+ +L    V I DYKT   P         
Sbjct: 189 VLGTQAQPEVSIMGTLTLEGRRYAVSGRIDRLAVLAD-RVVILDYKTNRVPPATEEAIPF 247

Query: 934 D--PQLSLEAAALK 945
               QL++    L 
Sbjct: 248 AHRAQLAIYREILA 261


>gi|192823972|ref|YP_001994618.1| gp71 [Mycobacterium phage Jasper]
 gi|190610567|gb|ACE80086.1| gp71 [Mycobacterium phage Jasper]
          Length = 274

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 81/290 (27%), Gaps = 57/290 (19%)

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
               + +  S S++ Q    P++    R  ++   P          +GT  H +  + +  
Sbjct: 11   YTYEKKPRSVSQLSQFDKCPFSWKLARHERVWKRPAAW-----LQQGTGVHAVAEKYMLS 65

Query: 823  RINKNT-----------PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI-------S 864
            ++  +             E    + +  +                     +         
Sbjct: 66   KLAGSPLTREECYEIFKAEYADGINEATEETPNLGWWFASGPYRGADDIERRWGIGLQQV 125

Query: 865  HSFLEH-------EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
               L+        E           + +  +  ++  GI + G+ D + +L  G V + D
Sbjct: 126  DKTLDWIDNHPSLEVWHTPDGTP-GIELAIEFELD--GIEIRGYIDAVLVL-DGEVQVVD 181

Query: 918  YKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977
            +K+G  P         D QL++ A AL      Q+   ++    Y   K           
Sbjct: 182  WKSGAKP-------GDDFQLAVYALAL-----KQLYGVEITRGVYFMAKTGKPTYPYDLT 229

Query: 978  KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI---QSEY 1024
                      EK      E+   L+ G+  F      S          EY
Sbjct: 230  DWTR------EKISARFHEMERKLEAGD--FTPKPGASCARCDVALSCEY 271


>gi|306819136|ref|ZP_07452850.1| possible ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239]
 gi|304648112|gb|EFM45423.1| possible ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239]
          Length = 1177

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 124/449 (27%), Gaps = 40/449 (8%)

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              +     ++++                    + +L  ++ G   ++L            
Sbjct: 650  AASRHWKVVAVAGLNDGAWPSRSWPGDLLGTSMFDLSRDDTGTDCANLEVIKAGFQWSFH 709

Query: 600  ANAIEWIDII----TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
            A+   ++  I      L+ G T       S  +  L    + +++ D +      EG   
Sbjct: 710  ADLRRFLAAITRATETLVLGTTTGDFESPSPLVLRLADNPAIVVHKDVVGFTPKPEGTEN 769

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
                   F      + L+   +      A            +            + A+  
Sbjct: 770  SGAGTASF------ALLDNPPSNLRDMVARLRILTMLSDAQVQMLGVGS--AEQSEAASL 821

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            L  L    G+       +     L         T                       S +
Sbjct: 822  LAWLGNAPGSAARAANPENWMGIL-------RPTVVEPAVSAGETTVENKPVFRIRASGM 874

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            + L+N+P+      + +L +    +++ +    GTL H +  E+ ++    ++ +    +
Sbjct: 875  ESLLNNPFD---TEMSRLGYEDEREEEYNAAIIGTLIHKVAEEMGRRHWYGSSCD--DKV 929

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKIS----HSFLEHEEKIQSSI-----EKIFVNIP 886
             ++      +E       ++                L +  K  +               
Sbjct: 930  DKLKREEICEETAGLMEKLLEGSRAENWMFINFERRLNYLLKRMNEFLYDHQVPSLFECG 989

Query: 887  AKMAIES----IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
             +M I        I  T   DR+   +SG + + DYKTG        +   + QL L   
Sbjct: 990  YRMTIPDSNNLGQISYTARIDRVLFTESG-IVLADYKTGSLGNYTKPKVANNLQLLLYQK 1048

Query: 943  ALKAGSFSQIDCRK-VANLFYI-RLKQKF 969
            A   G       +  VA+  +I  L+   
Sbjct: 1049 AFNEGRPIGGAPQGLVADAAWIVGLRGDK 1077


>gi|268316024|ref|YP_003289743.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
 gi|262333558|gb|ACY47355.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
          Length = 681

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 76/711 (10%), Positives = 187/711 (26%), Gaps = 117/711 (16%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TLV    Y          + +   T+RA +E+ +    +   +   +    +       
Sbjct: 53  RTLVYRVAYLVETGTPPEEIVLLTFTRRAAREMLARAAALLDGRCERV-QGGTFHAFCLG 111

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                                 +  A       + L                 +      
Sbjct: 112 LLRRYAGRLGY------PSNFTVLDASDAADVIDLLRTAHGLHRSGRRFPRKQTIQAIFS 165

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            A +  D            E +   +  ++          L+     +  +   ++    
Sbjct: 166 AAASHPD---------ADLETILEARYPQFLEHLEALQA-LREDYACYKRQHGLMDYDDL 215

Query: 208 VGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
           +   I L R   +    +      +++     +    A+++  +A       V+   D  
Sbjct: 216 LACTIELFRQHPDVHRQVAARCRHVLVDEYQDTNRLQAQIVQALAAVHGN--VMAVGDDA 273

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     ++          +          +  L+      + + +++N +  R+ 
Sbjct: 274 QSIYRFRGADFRNIFEFPRLFPGTR---------ILKLEQNYRSTQPILDLANRIIRRAH 324

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
                               +  + + +K     A++ A +ER E+  +   +    ++ 
Sbjct: 325 H-----------------RYDKVLFSERKQGERPAIVPAPDERTESRFVCQMILALREQG 367

Query: 385 -NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
               + A++    + A  +++EL R GI      G+ LS   H   L + L  +    D 
Sbjct: 368 VPLHQMAVLFRSSHNAFDLEMELNRRGIPYVKYGGLKLSEAAHVKDLLAYLRLLENPKDA 427

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            A   +++                                    L   +  R A +    
Sbjct: 428 AAWNRVLQ------------------------------------LIEGIGPRTAQRLIEW 451

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                 +  + E++  +    + +++  T L      +        +++         + 
Sbjct: 452 ITSADATPFTLEERPFSPRYAEALIRLFTLLRQLWETELPLEAQ--LTELLHYYRPLCER 509

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                      L   E   +LS+ F         +  + +E   +         V+P +E
Sbjct: 510 --RYYEDYPKRLQDLEHLVSLSARFQSRAAFLEALVLDPLELTAL--------EVEPLVE 559

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               L +     ++ L F T+ +    EG+ P              S   L   E    +
Sbjct: 560 DEPPLVLSTIHSAKGLEFHTVFIIHALEGILP--------------SAYALNDPEALDEE 605

Query: 684 AAHDFEMANGTRHLIYT------RSLRENNIPTIASRWLQRLLVLGGTDFF 728
               +      R  ++             +  T  SR+L+ L       + 
Sbjct: 606 LRLLYVAVTRAREYLFISYPMVRYQAGSGSYLTSPSRFLEDLPEEILEPWV 656


>gi|163846307|ref|YP_001634351.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222524068|ref|YP_002568539.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
 gi|163667596|gb|ABY33962.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222447947|gb|ACM52213.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
          Length = 878

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 90/837 (10%), Positives = 204/837 (24%), Gaps = 105/837 (12%)

Query: 51  VPTKRAIQELRSEFIEITGKKSTILPI--------IKSLGDVVEEKFTADLLLSYNLNPP 102
             T++A ++L        G  + +           I ++  + +   T       +   P
Sbjct: 81  TFTEKAARQLSDGLRSYLGLVTNLTGQPYDLAGMYIGTVHSLCQRILTDRRRFFLDRQRP 140

Query: 103 VSN--IQRLLELARLILIWRNKLPDIIKDLYPESPLSL------PISPANAIWLAKNLAD 154
            S   +  L +   L      ++      L P S   +          A+     + L  
Sbjct: 141 RSPALLDDLGQYFHLYERANWEIVTRAAGLDPSSAAEVVTGHLNTQPSASRHRAIEALRP 200

Query: 155 IIDIIETEEKKWEDLH----ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
             +    E     +L     +L   ++        D L    + + + L E   +     
Sbjct: 201 FFNRFSEELLDPAELRPRLSSLVRGEFSP---QDVDLLLALYEGYLQSLREAGRTDFALL 257

Query: 211 QIALMRAEAEHLMKGT-KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
           Q    +   E    G     +I+     +     R+   +A       V+   D      
Sbjct: 258 QREAFQVLQEFQGAGGVFRHVIVDEYQDTNTIQERIFFRLAEGTGNLCVV--GDDDQALY 315

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
            +   T ++     +        Q  L +    + ++     R   V       +    +
Sbjct: 316 RFRGATVENFVQFPARC------QKYLNQTPRTISLEINYRSRSHIVETYGRFINHTNWQ 369

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD----EN 385
                     +N     N +                   +    IA  +R  ++    +N
Sbjct: 370 DRDGMVYRIPKNIRAYRNDLAPAVVAS------TPAEPEQACQEIARFVRRLIETGKVQN 423

Query: 386 KKKSALITADRNLAR--RVKLELTRFGINIDISAGIPLSTTLHSSILTSLL--------- 434
             + A +       +  R+   L   G+++             +  +  +          
Sbjct: 424 PNQIAFLYPSLKSEQAKRMIAALKAEGLDVYAPRAGRFLEVDEARDVLGIFLAIFGRPTI 483

Query: 435 --------------NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
                          A+    D +     +     +    E   + +  A     L  N+
Sbjct: 484 EGRGHDLRTFEVYLTALQTRADELQQTDPLLKQFIQNRRDEIQRALSDYAALQAVLTRNR 543

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
              D +   + +   +A     +   H     +  D+ + +   +     +  ++   T+
Sbjct: 544 WLPDQLYDPASMKRALADAPGLSETGHRLVSSAYLDRLVLLRASEGRPLSLEYVIRRATS 603

Query: 541 KNSTCGNL-----SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
            +    +L         +  +     +         L  L           +        
Sbjct: 604 LDWNLLDLFYQLMGFEHFKAMFDRAERQGDEGAVANLGLLTQYLARFVQERVNILTAAIL 663

Query: 596 SCIKANAIEWIDIITRLID----GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
           S  K + + +   I  L          +        +  L   +++ L F  ++LG L++
Sbjct: 664 SEHKFSGMFFGSFIFALYRLEEGEREDEENPFPRGRIPFLTIHQAKGLEFPVVVLGNLDK 723

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
                   +      + +              A   +   +  ++L+             
Sbjct: 724 RDHGAPLIERLVRPLLSRPAGEPLDRMTAFDIARMFYVALSRAQNLLILAHFSGRG---- 779

Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
                QR           NL                         P      E  P+ YS
Sbjct: 780 -----QRQDEAFKPILNGNLP--------------RLADFDLNSLPNAVATDETLPKVYS 820

Query: 772 FSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
           F+    L    P      R                   G+L H  I +L  + I + 
Sbjct: 821 FTADYLLYQTCPRQYMIFRKFGFVPSRSQTMF-----FGSLVHRTIEDLHHEIIRRR 872


>gi|288921364|ref|ZP_06415644.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288347216|gb|EFC81513.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 1138

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 90/876 (10%), Positives = 202/876 (23%), Gaps = 110/876 (12%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGST 236
                  L      +       +            R      E     +G  G +++    
Sbjct: 267  ARGRRELAALVADYRVARRARDVLDFGDQVTFAARLAGRYPEVAAAERGRAGVVLLDEYQ 326

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
             +  A   +++ +     G  V    D       W   +  + +    +   +     + 
Sbjct: 327  DTSVAQRTMLAGLFGA--GHPVTAVGDPCQAIYGWRGASVANLDNFPEHFPRADGTPAAR 384

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
             +L          +    +V+  +  R  V+       D      T +  ++    +  +
Sbjct: 385  YRLSVNQRSGGRLLALANDVAAPLRARHHVVELRPR-ADVVAAGRTLVALHESWAQEVAW 443

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
                L E     E   S+A+ +R   D     +AL  A   +       L       D+ 
Sbjct: 444  VAERLAELVAAGERPGSMAVLVRARSDVRALHTALTAAGLPVEVVGLAGLLDLPEIADVV 503

Query: 417  AGIPLSTTLHSSI----LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
              + +  +  ++     L +         D  A+    +  L+     +   + A     
Sbjct: 504  TVLEVLESPIANAALVRLLTGPRLRLGPRDLAALGRRARQLLSADTARDGAAAAASGPAA 563

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV--------LLV 524
               L       D  D+ +L           +     +      +              L+
Sbjct: 564  ADPLAEAVAGIDPCDVVALADALTDPGPEISAAGRERVIELGAELAALRVHVGDGLLDLL 623

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
              ++  I   V    +  +       +    L      +     +     L +    +  
Sbjct: 624  HRVIATIGLDVEISASPKAVAARRRENLAAFLDAAADFDDPDGPNSLASFLAYLRAAREH 683

Query: 585  SSLFS------------KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
                               +     ++   +   D+   +    TV+ +   S+ +    
Sbjct: 684  ERGLDITGPSGADAVALMTVHRAKGLEWEVVAVPDLSRGVFPDLTVRDRWTTSTGVLPTP 743

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---- 688
                        +     E     +  +        +      T  K +   +  +    
Sbjct: 744  LRGDAAELPAYAVSDSKAELATFTDDCRAYQEREERRLAYVAFTRAKSVLLGSGHWWGPT 803

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQ------------------------------- 717
            +       +  T                                                
Sbjct: 804  QRTRRGPSVFLTELREHAAAGHGQVAVWAPEPAPGRNPDLAVPAEFSWPMPYEPVAYARR 863

Query: 718  -----------RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                        LL  G     D L            +LD        +      P    
Sbjct: 864  REAAAAVEQAFALLGAGQAPPVDELAGMTARERALLAELDREAALLLAEERSARAPFRDV 923

Query: 767  PRT--YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
                  + S+I +L  DP    AR + +        +      RGT FH  + EL  +R 
Sbjct: 924  AMPTSLTASDIVRLRADPAEF-ARELARPLPRRPVPQ----ARRGTRFHTWVEELFDQRP 978

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
              +  ++                       +       +  +FL      +       + 
Sbjct: 979  LIDLDDVVDA----------AGAEGAAGQRLTGPDLAALQDAFLAGPYGAR---RPFALE 1025

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
             P ++ I    +   G  D +  L  G  ++ D+KTG  P           QL++   A 
Sbjct: 1026 TPFEVMIGGRAV--RGRIDAVYDLGGGRWEVVDWKTGSEPADP-------VQLAVYRVAW 1076

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
                   +      +  Y  +     +      + +
Sbjct: 1077 AKVRGVAVPDV---DAAYFYVASGQVVRPPLLSEDE 1109


>gi|261418926|ref|YP_003252608.1| recombination helicase AddA [Geobacillus sp. Y412MC61]
 gi|319765743|ref|YP_004131244.1| recombination helicase AddA [Geobacillus sp. Y412MC52]
 gi|261375383|gb|ACX78126.1| recombination helicase AddA [Geobacillus sp. Y412MC61]
 gi|317110609|gb|ADU93101.1| recombination helicase AddA [Geobacillus sp. Y412MC52]
          Length = 1242

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 77/807 (9%), Positives = 186/807 (23%), Gaps = 126/807 (15%)

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN-HPNGAIVLPGLDCHIPTAIWNTITEK 277
            A    +     +++     +      ++  V         +    D       +      
Sbjct: 399  AALEYQAQFDEVLVDEYQDTNLVQEAILQLVKKGSERTGNLFMVGDVKQSIYRFRLAEPM 458

Query: 278  STNITSSNTTY---STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
                     T        +  LA          +    L           MV  ++    
Sbjct: 459  LFLDKYKRFTADGEEGGMKIDLASNFRSRREVLDGTNFLFAQLMGETVGEMVYDEAAQLK 518

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR--------------- 379
              +D    +    ++  I +  +     E   E E A   A  +                
Sbjct: 519  YGADYPEGEDAAPEVMIINRQRAAEEDEEEAAEWEAAELEARLMAKKIKEIVSAPFYVYD 578

Query: 380  ----MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                       +   ++      A ++  +L   GI                SI+ SLL 
Sbjct: 579  RSSGQPRRAMYRDIVILVRSMTNAPQMIEQLQAQGIPAAADLSSGYFQATEISIMLSLLK 638

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             I   +  + +A +++ PL  F   E  + R  +                 + K     +
Sbjct: 639  VIDNPHQDIPLAAVLRSPLFHFDENELAMIRLADPKGTFYEALCSFRQKPAETKEEANAQ 698

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                     +  W++          +  +    Q    +      +       ++ D  +
Sbjct: 699  RKAAAFLERLEGWRTMARRRSLADLIWQLYRDTQFYDFVGALPGGRQRQANLRALYDRAR 758

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
               +          R +  L    +    +    +  +    +  ++ + ++     + G
Sbjct: 759  QYESTSFRGLFRFLRFIERLQERGDDLGAARPLGEQEDVVRIMTIHSSKGLEFPIVFLAG 818

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
                                  LL+ +              +    P L+   +  L L 
Sbjct: 819  LARSFHTR--------DLHHPYLLDKELGFAARFVHPRLRISYPTLPLLAIQTKKRLELL 870

Query: 676  TAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIAS--------------------- 713
              E  I      +      +  L    S+ +                             
Sbjct: 871  AEEMRI-----LYVALTRAKEKLYLLASVNDAAKEIEKWKSAASERGWLLPDDVRASARS 925

Query: 714  ------RWLQRLLVLGGTDFFDNLKKRGQCYLDW---------------TRKLDYTTKQP 752
                  R L R    G        ++       W                R+        
Sbjct: 926  YLDWIGRALIRHRDGGALAGTKAPEEVASHPSVWRVAIVPAADLRGQEAAREEMDGGVLL 985

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQL----------------INDPYAVYARRILKLDFI 796
              ++ +P P             + +                 + +  A++  +  +    
Sbjct: 986  ALEQGRPVPVGGGWQEEAKRRLLWRYSYEKETAVRAKQSVSELKEQRALFGEQADEWRPR 1045

Query: 797  PH-----------FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                          +K     ++GT  H ++  L  +    +   I   + ++++     
Sbjct: 1046 QGTAPVFSRPRFMQEKTLTPAEKGTALHVVMRHLDLQAPL-DESSIRSQIVRLVEKELLS 1104

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI------------ES 893
                  +D         I+  F     +   +  ++   +P  + +              
Sbjct: 1105 AEQAEAVDP------AAIAAFFTADLGRRLCAAREVHREVPFSLGLKAAELYGGEGTESG 1158

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKT 920
              + + G  D +   + G+V I DYKT
Sbjct: 1159 RRVLVQGVIDCVFADECGYVMI-DYKT 1184


>gi|218779196|ref|YP_002430514.1| hypothetical protein Dalk_1345 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760580|gb|ACL03046.1| conserved hypothetical protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 271

 Score = 75.0 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 57/193 (29%), Gaps = 17/193 (8%)

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
               S S I   ++   A   R + +L      +   D    G+  H ++       +  
Sbjct: 9   QPHLSCSSISLYLDCSLAYKFRYVDRLK----SESVSDALVFGSAIHAVLERFYNSLM-I 63

Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL---FHKISHSFLEHEEKIQSSIEKIF- 882
                   +  + +  +++       DII       F K   +            E +  
Sbjct: 64  GEVIPVDALVDLWELTWKEHA--EGRDIIDWKRGNDFDKGLETGAGLLRAFSQKFEVVDT 121

Query: 883 ----VNIPAKMAIESIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPKKETAQKLIDPQL 937
               V     + I+ + I + G  D +     SG V I D+KT               Q 
Sbjct: 122 AIICVEEAFSLTIDGLDIPVIGVFDLVLQDLASGLVTIVDHKT-RAKAMPERDANESLQA 180

Query: 938 SLEAAALKAGSFS 950
           S+ A A K   F 
Sbjct: 181 SIYALAAKTNGFR 193


>gi|163839113|ref|YP_001623518.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209]
 gi|162952589|gb|ABY22104.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209]
          Length = 797

 Score = 75.0 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 76/700 (10%), Positives = 176/700 (25%), Gaps = 111/700 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R     + G  +  +  I +           +   +  LN   S
Sbjct: 79  GQILAITFTNKAAAEMRERIAALIGDAAKNM-WISTFHSSCVRILRRE-ASTVGLNSSFS 136

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                  L RLI +    L    K   P++      +  N +      A        +  
Sbjct: 137 IYDSADSL-RLITLIARGLDLDPKRFAPKAMQHKISALKNELIDDDAFAATATDPFEQGV 195

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-- 222
                                       + +T+RL + NA          +         
Sbjct: 196 ------------------------AEVYRGYTQRLRQANALDFDDLIAQTVWLFRAFPGV 231

Query: 223 ---MKGTKGPIIIAGSTGSIPATARLMSTVANHPNG-----AIVLPGLDCHIPTAIWNTI 274
               +     +++     +  A   L+  +     G     A +    D       +   
Sbjct: 232 ADYYRRRFRHVMVDEYQDTNHAQYALVKEIVGPAEGSGDEPAELTVVGDSDQSIYAFRGA 291

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             ++            +P     KL       +  +     V  +   R           
Sbjct: 292 DIRNIVEFEK-----DYPNARTIKLEQNYRSTQTILSAANAVIEKNPDR----------- 335

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSAL 391
                        ++   +     +    A+NE EEA  IA     L+   D      A+
Sbjct: 336 ----------PVKRLWTAEGDGEKIIGYVAENEHEEARFIAEEIDRLQDEADFRPGDVAI 385

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
                  +R ++  L R G+   +  G             + L  +    D + +  ++ 
Sbjct: 386 FYRTNAQSRSIEEILMRVGLPYRVVGGTRFYERKEIKDALAYLRVLVNPEDDVNLRRILN 445

Query: 452 HPLAKFGFPEKYLSRAKNALEL-VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
            P    G   +    A    E    +   +++ D   + +  L+ +             +
Sbjct: 446 EPKRGIGDRAEGAVAALAERERSSFMAALRHAEDAPAIATRSLNAVNGFVKLIDDLTEVA 505

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
             S     L  +L       +  L    ++        ++++   +     ++       
Sbjct: 506 STSGAATALEAVLEQTGY--LETLRA-SSDPQDESRVENLAELVAVVREYERDKPEGS-- 560

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
                        L+     +       +       D    + +         +   + +
Sbjct: 561 -------------LTDFLEGVALVADADQIPDAPGSDTEAAVAEAR-------RLGVVTL 600

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L F  + L G+  G++P+  +                 A++   +    +  
Sbjct: 601 MTLHTAKGLEFPAVFLTGMEHGIFPQARS--------------ATDAKELAEERRLAYVG 646

Query: 691 ANGTR-HLIYTRSL----RENNIPTIASRWLQRLLVLGGT 725
               R  L  TR+        +    AS ++  +      
Sbjct: 647 LTRARKRLYLTRAEVRSLWGQSQYNPASPFIDEVPANLIE 686


>gi|150020319|ref|YP_001305673.1| hypothetical protein Tmel_0420 [Thermosipho melanesiensis BI429]
 gi|149792840|gb|ABR30288.1| hypothetical protein Tmel_0420 [Thermosipho melanesiensis BI429]
          Length = 966

 Score = 75.0 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 83/600 (13%), Positives = 189/600 (31%), Gaps = 53/600 (8%)

Query: 360 ALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISA 417
            +    N   E   ++  ++  + +  +    A+I  + N+A+++  +LT  GI  +++ 
Sbjct: 272 KVFAYKNSIMEIYEVSGKIKELVKDGCSPSDIAVIVPNVNVAKQISEKLTEMGIPNNVNL 331

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
              LS +    IL   L  I+   +   I  L++ P              K  +E   + 
Sbjct: 332 QSKLSESKIVRILLQPLKTIYFNYEIEDILALIESPYINTRELTMDKVE-KFFMEFKMID 390

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
              +   I ++   +      + ++T+          E  E     +D +    T L   
Sbjct: 391 DEFSKEKINEITEKIKKLEEVEDDDTYQDR------MEKIEEYKTFIDILKDVFTLLDKV 444

Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
           K   +          + +     +++  +    +   +           + + ++     
Sbjct: 445 KEGLSGDFIKW----FLEFVKNSIEDFKVFLSNEYEIMEERNALLKFVEVLNNLLSYDLD 500

Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
           IK +   W  II  +I  E  +    K + + I    ++R +           +  +P  
Sbjct: 501 IK-SWRTWFKIINSIIGVEKYRFLERKENAVDIFDITQARFVKKKYKFFVSFLDTYYPSF 559

Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE-NNIPTIASRWL 716
                 L+ +   +  +   E+      + F     +     T         P + S + 
Sbjct: 560 DLNPLILNVLSNPNKLMAFNEEIER--RNIFLSLIFSDTNYITYPHSTLTGEPLLPSVYA 617

Query: 717 QRLLVLGGTDFFDNLKKRGQ-CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
               ++   D    +       Y    +KL          +           +  S + I
Sbjct: 618 NEFGIIEKVDSTFYIIPPANKVYSYIDKKLYEAFNDEKSLKLNETWQTNFSVKKLSHTLI 677

Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL- 834
            + +  P+  Y     K+      K+      +G L+H ++ +  +++ N    +I    
Sbjct: 678 SKYVGCPFYFYLSEKGKVKNFDENKESL---YKGILYHRVLKKYFEEKPNVILKKIVQET 734

Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF------LEHEEKIQSSIEK---IFVNI 885
             +I    F + ++P  ++        K   S       +EHE       +      +  
Sbjct: 735 YDEIFTDEFSQYSIPKTVN------IEKYLSSISNFFDKMEHEYSKLKEYDPQSIFKLEQ 788

Query: 886 PAKMAIESIGIHLTGFADRIDLL--KSGFVD-ITDYKT--GDNPKKETAQKLIDPQLSLE 940
                ++   + +    DRID+L  ++  V  I DYKT     P +         QL + 
Sbjct: 789 VYSSKLKDFLVEV--RVDRIDILKKENKTVYAIIDYKTKLNKIPVE---------QLLIY 837


>gi|194290034|ref|YP_002005941.1| helicase, uvrd subfamily [Cupriavidus taiwanensis LMG 19424]
 gi|193223869|emb|CAQ69878.1| Putative helicase, uvrD subfamily [Cupriavidus taiwanensis LMG 19424]
          Length = 1213

 Score = 75.0 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 93/843 (11%), Positives = 186/843 (22%), Gaps = 111/843 (13%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK--------GTKGPIIIA 233
                         + +   E  A      +    R  ++                 +++ 
Sbjct: 367  QALFRIGDALLTRYQQHKDEQRAMDFADLEWQAARLMSDEETATYLQVRLDARYRHLLLD 426

Query: 234  GSTGSIPATARLMSTV----ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
                + P   R++       A       V    D       +     +           +
Sbjct: 427  EFQDTNPLQWRILQGWLAGYAGLGERPTVFLVGDPKQSIYRFRRADARLFGAAGEMLRDA 486

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                            +  D       S    GR  + S               +   + 
Sbjct: 487  FGATVLRTNRTRRNRAEVLDWVNAVFDSARAEGRYPLYSTQTTALGGCGGPVWLLPLVEP 546

Query: 350  PNIQ---------------KCFSDVALIEADNER-----------------EEAISIAIA 377
                                  ++     AD+                   EE   +A  
Sbjct: 547  DEADDADDADHADHADESVAADANGEPANADSAHRDTLLQPRRQAGDSLRLEEGRRVAAW 606

Query: 378  LRMSLDENK------------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            LR+  D                   L+   +      +  L   GI         L  TL
Sbjct: 607  LRLVRDTVPVHEGSTQRPARWSDMHLLVRRKTHLADYERALREAGIPCLSPRRGGLLATL 666

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
             +  L++LL  +      + +A ++K PL      +               R        
Sbjct: 667  EALDLSALLAFLMTPESDLDLAHVLKSPLVGATDDDLLALAQMEGEGGWWAR-------- 718

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              +++  L    +      VP  +  L     +    L+D I         Y        
Sbjct: 719  --IEAAGLPAQVSDALREGVPRLRQWLRVAPHQPVHDLIDQIFHGGEVRRRYAEAAPPDI 776

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
                +++        L    LD  R      F +E + +             +  +A + 
Sbjct: 777  REQVLANLDAFLKLSLD---LDGGRYPSLPKFIDELQEIRRGDEGESPDEGGMGDHAED- 832

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK--------- 656
                   ++     P       + IL    ++ L    ++L   N               
Sbjct: 833  -------LEPAGDDPAYAGLDAVHILTVHAAKGLEAPFVVLLDANHSEPAADRGGILVDW 885

Query: 657  ---NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
               +     F +   +S+  L  A  +  +AA          ++  TR+ +   +  +  
Sbjct: 886  PPSSPVPRHFSAYGKRSERGLARAPLFEAEAALGERENWNLLYVAMTRAQQGLLVSGVKG 945

Query: 714  RWLQRLLVLGGTDFFDNLKKR------GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
            R  +     G  +   +   R      G+    +                +   P+    
Sbjct: 946  RASRGSAGEGNAEIAGSWYVRLQAAGVGEMVPAYPDARGDAADAQALLPARLSEPVRFTD 1005

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
                + +          +        D       +      G L H ++  L +      
Sbjct: 1006 FRLRYRDAIDDAR-QAGIADDDAQAPDDSDGIVFNAAAARHGELVHALLERLTRY---PG 1061

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
                   +  ++                WR    +   +           +  +      
Sbjct: 1062 AFAGVPAIDTVLRWFPLTGAHTTAARSAWRQQVEEALAAVATML--RAPVLAPLLA--AG 1117

Query: 888  KMAIESIGIHL---TGFADRIDLLK--SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
                    + L    G   RID L      V I DYK                QL   AA
Sbjct: 1118 DACSARNEVELYDARGRLLRIDRLVEFDERVVIIDYK---LRLLPQEHAAYRAQLGRYAA 1174

Query: 943  ALK 945
            A+ 
Sbjct: 1175 AIA 1177


>gi|307700023|ref|ZP_07637072.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307614784|gb|EFN94004.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 1177

 Score = 75.0 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 124/449 (27%), Gaps = 40/449 (8%)

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              +     ++++                    + +L  ++ G   ++L            
Sbjct: 650  AASRHWKVVAVAGLNDGAWPSRSWPGDLLGTSMFDLSRDDTGTDCANLEVIKAGFQWSFH 709

Query: 600  ANAIEWIDII----TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
            A+   ++  I      L+ G T       S  +  L    + +++ D +      EG   
Sbjct: 710  ADLRRFLAAISRATETLVLGTTTGDFESPSPLVLRLADNPAIVVHKDVVGFTPKPEGTEN 769

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
                   F      + L+   +      A            +            + A+  
Sbjct: 770  SGAGTASF------ALLDNPPSNLRDMVARLRILTMLSDAQVQMLGVGS--AEQSEAASL 821

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            L  L    G+       +     L         T                       S +
Sbjct: 822  LAWLGNAPGSAARAANPENWMGIL-------RPTVVEPAVSAGETTVENKPVFRIRASGM 874

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            + L+N+P+      + +L +    +++ +    GTL H +  E+ ++    ++ +    +
Sbjct: 875  ESLLNNPFD---TEMSRLGYEDEREEEYNAAIIGTLIHKVAEEMGRRHWYGSSCD--DKV 929

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKIS----HSFLEHEEKIQSSI-----EKIFVNIP 886
             ++      +E       ++                L +  K  +               
Sbjct: 930  DKLKREEICEETAGLMEKLLEGSRAENWMFINFERRLNYLLKRMNEFLYDHQVPSLFECG 989

Query: 887  AKMAIES----IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
             +M I        I  T   DR+   +SG + + DYKTG        +   + QL L   
Sbjct: 990  YRMTIPDSNNLGQISYTARIDRVLFTESG-IVLADYKTGSLGNYTKPKVANNLQLLLYQK 1048

Query: 943  ALKAGSFSQIDCRK-VANLFYI-RLKQKF 969
            A   G       +  VA+  +I  L+   
Sbjct: 1049 AFNEGRPIGGAPQGLVADAAWIVGLRGDK 1077


>gi|227875855|ref|ZP_03993981.1| hypothetical protein HMPREF0577_1282 [Mobiluncus mulieris ATCC 35243]
 gi|227843603|gb|EEJ53786.1| hypothetical protein HMPREF0577_1282 [Mobiluncus mulieris ATCC 35243]
          Length = 1177

 Score = 75.0 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 57/449 (12%), Positives = 124/449 (27%), Gaps = 40/449 (8%)

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              +     ++++                    + +L  ++ G   ++L            
Sbjct: 650  AASRHWKVVAVAGLNDGAWPSRSWPGDLLGTSMFDLSRDDTGTDCANLEVIKAGFQWSFH 709

Query: 600  ANAIEWIDII----TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
            A+   ++  I      L+ G T       S  +  L    + +++ D +      EG   
Sbjct: 710  ADLRRFLAAITRATETLVLGTTTGDFESPSPLVLRLADNPAIVVHKDVVGFTPKPEGTEN 769

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
                   F      + L+   +      A            +            + A+  
Sbjct: 770  SGAGTASF------ALLDNPPSNLRDMVARLRILTMLSDAQVQMLGVGS--AEQSEAASL 821

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            L  L    G+       +     L         T                       S +
Sbjct: 822  LAWLGNAPGSAARAANPENWMGIL-------RPTVVEPAVSAGETTVENKPVFRIRASGM 874

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            + L+N+P+      + +L +    +++ +    GTL H +  E+ ++    ++ +    +
Sbjct: 875  ESLLNNPFD---TEMSRLGYEDEREEEYNAAIIGTLIHKVAEEMGRRHWYGSSCD--DKV 929

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKIS----HSFLEHEEKIQSSI-----EKIFVNIP 886
             ++      +E       ++                L +  K  +               
Sbjct: 930  DKLKREEICEETAGLMEKLLEGSRAENWMFINFERRLNYLLKRMNEFLYDHQVPSLFECG 989

Query: 887  AKMAIES----IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
             +M I        I  T   DR+   +SG + + DYKTG        +   + QL L   
Sbjct: 990  YRMTIPDSNNLGQISYTARIDRVLFTESG-IVLADYKTGSLGNYTKPKVANNLQLLLYQK 1048

Query: 943  ALKAGSFSQIDCRK-VANLFYI-RLKQKF 969
            A   G       +  VA+  +I  L+   
Sbjct: 1049 AFNEGRPIGGAPQGLVADAAWIVGLRGDK 1077


>gi|170732537|ref|YP_001764484.1| exodeoxyribonuclease V subunit gamma [Burkholderia cenocepacia
           MC0-3]
 gi|169815779|gb|ACA90362.1| exodeoxyribonuclease V, gamma subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 1112

 Score = 75.0 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 85/883 (9%), Positives = 195/883 (22%), Gaps = 54/883 (6%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              +  ALL        R  P  P       + VP+    + L  +     G  + +   
Sbjct: 10  HETLADALLEDLAAFPARNGPWAPQ-----QVIVPSAALRRRLELDIAARNGVCANVEFT 64

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
             +       ++    +      P  S       + R   ++            P     
Sbjct: 65  YLA-------QWLWAQIGRVLTVPARSPFAPDRLVWRCYRLFAQAADGAPWLASPRLAAY 117

Query: 138 LPISPAN-AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAADFLKI 190
           L  S       LA  +A ++D   T   +W                       A D  + 
Sbjct: 118 LSASDDAMRYELAHRVAAVLDHYLTYRPEWLAAWQAGESVLAGDAAPRGISDAARDDERW 177

Query: 191 ASKYWTERLVEL-NASSPVGYQIALMRAEAEH---LMKGTKGPIIIAGSTGSIPATARLM 246
            +  W   L EL ++ +P  ++  +     +            + +       P    L+
Sbjct: 178 QAALWRALLAELSDSGTPPAHRFLVEARHLDADAVARADWPESVSVFALPTMPPLHVALL 237

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
             ++   +  +            I      ++ +               LA+       +
Sbjct: 238 RELSRWIDVRVYALNPCREFWFDIVTAAHAEALDAAGRRDYQEVGHP-LLAEWGRQTQAQ 296

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
              +  L   +        V + +            ++              + +    +
Sbjct: 297 LHMLHELTESAASGDASRFVENPAPTWLARVQNAILELQPEVDIGDTPVERGIEVHVCHS 356

Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI----------NIDIS 416
              +   +   L    D +                    L                  I+
Sbjct: 357 LARQLEVLHDRLLAWFDADASLQPSDVLVAVADLAAAGPLIDAVFGTAGAGGARVPYRIT 416

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
              P      + +L   L    +      +   ++       +     +       L A 
Sbjct: 417 GLPPSQANPVARVLLDWLALPERQVGAPELVEWLRVDAVAARYDIDAAALETVQTWLAAA 476

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL---------VDHI 527
              +         + V     T  +          + E    +   L          + +
Sbjct: 477 GARRGLSPRASDDAAVPAPRHTFSDALARLFLGYAMPEGAAPIGAWLPIEAATGSEAELL 536

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            +                 + +   W++L    L             L    +   L ++
Sbjct: 537 GRLARFTDDLDGFARRLAESHTPRGWSELFADTLARFFDSGAAYADALAGVRD--ALDAM 594

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
            + + E        A      +   +D             +        R L +  + L 
Sbjct: 595 LAAMTEGAPDEALPAAVVRAGLAAALDD--PARGGVPWGGVTFSSLTSLRGLPYRVVCLL 652

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLN-LKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
           G+++GV P     + F    +   L   +  +            A     + YT     +
Sbjct: 653 GMDDGVLPSLARADEFDLMAVLPKLGDRQRRDDERNLFLDLLLAARDRLLIAYTGRSIRD 712

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
           N P   +  +  LL     D    +        D            H  +P      +  
Sbjct: 713 NAPLPPAALVDELL-----DHLAIVTAGPGAAPDAVDAARRAFIVEHPLQPFAAAYFQLG 767

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
               S+   +  +    A  A R  +    P F +         +  +      +     
Sbjct: 768 SELVSYDAERATLASLLAAEASRG-QPREQPFFAQPLPAEPVEPVAFSEFERFWRHPARA 826

Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
                  ++     +                 L  ++    +E
Sbjct: 827 LLRGRLGIVLTDAQAELLDTEPFALDFAGSDALAERVLPLLIE 869


>gi|289749132|ref|ZP_06508510.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis T92]
 gi|289689719|gb|EFD57148.1| exonuclease subunit V gamma recC [Mycobacterium tuberculosis T92]
          Length = 734

 Score = 75.0 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 70/689 (10%), Positives = 166/689 (24%), Gaps = 43/689 (6%)

Query: 39  LNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS-LGDVVEEKFTADLLLSY 97
             P   A   + V  +   + L      + G        + + +     +   A++  + 
Sbjct: 25  PQPDPFAQELVLVAARGVERWLSQRLSLVLGCGPGRADGVCAGIAFRNPQSLIAEITGTL 84

Query: 98  NLNPPVSNIQRLLEL----ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
           + +P          L    A L   W   L   +         +          +A+ LA
Sbjct: 85  DDDPWSPEALAWPLLAVIDASLDEPWCRTLASHLGHFATTDAEAELRRGRR-YSVARRLA 143

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            +      +         L               L      W   +  + A  P      
Sbjct: 144 GLFASYARQR------PGLLAAWLDGDLGELPGDLAWQPPLWRALVTTVGADPPHVRHDK 197

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            +    +         + + G T       +L+  +A H +  + LP         +W  
Sbjct: 198 TIARLRDGPADLPA-RLSLFGHTRLACTDVQLLDALAVHHDLHLWLPHP----SDELWRA 252

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK-REDVKRLGNVSNEMYGRSMVISKSFL 332
           +               T  + +   LL+ L    RE  + L                  L
Sbjct: 253 LAGFQGADGLLPRRQDTSRRAAQHPLLETLGRDVRELQRALPAARATDEFLGATTKPDTL 312

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKK 388
                     +       ++      V +        +   +   L   L++      + 
Sbjct: 313 LGWLQADIAGNAPRPAGRSLSDADRSVQVHACHGPARQIDVLREVLLGLLEDDPTLQPRD 372

Query: 389 SALITADRNLARRVKLE----------LTRFGINIDISAGIPLSTT-LHSSILTSLLNAI 437
             ++  D +    + +                      A   L+ T    S+   LL   
Sbjct: 373 IVVMCPDIDTYAPLIVAGFGLGEVAGDCHPAHRLRVRLADRALTQTNPLLSVAAELLTIA 432

Query: 438 FKLNDFMAIATLVKHPLAK----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                   +  L +    +    F   +            +    +        L ++V 
Sbjct: 433 ETRATASQLLNLAQAAPVRAKFGFADDDLDTITTWVRESNIRWGFDPTHRRRYGLDTVVH 492

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
           +      +        S  S+   + A+ L D     +                +     
Sbjct: 493 NTWRFGLDRILTGVAMSEDSQAWLDTALPLDDVGSNRVELAGRLAEFVERLHHVVGGLSG 552

Query: 554 TKLTVTCLQNVCLDEHR--KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            +  V  L  +           + W   + +   +       + +       +   ++  
Sbjct: 553 ARPLVAWLDALATGIDLLTACNDGWQRAQVQREFADVLARAGSRAAPLLRLPDVRALLDA 612

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            + G   +    ++ TL +   +  R +    + L GL++GV+P+ +  +      + + 
Sbjct: 613 QLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGVFPRLSHPD---GDDVLAR 668

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
             +        +       A G       
Sbjct: 669 EPMTGERDIRSEDRQLLLDAIGAATQTLV 697


>gi|199597352|ref|ZP_03210783.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|199591868|gb|EDY99943.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001]
          Length = 750

 Score = 75.0 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 71/624 (11%), Positives = 158/624 (25%), Gaps = 97/624 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVS 104
           ++     T +A +E+R    ++   +      + +   +       D+  L YN    ++
Sbjct: 56  NILAITFTNKAAREMRERVGKLVDPEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIA 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +    L L + IL           D   +     P S   AI  AK           E  
Sbjct: 116 DPAEQLTLVKHILA----------DFNLDPKRYDPKSILGAISGAK----------NELI 155

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
             +       +    +    A         + +RL    A       +  +    +    
Sbjct: 156 DPQTYS--DEQANSPFTKTVAQ----VYAEYQKRLRSDQALDFDDLIMQTIVLFEKDPET 209

Query: 225 G-----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I +     +  A  RL+  +A   +   V+   D       W     ++ 
Sbjct: 210 LGFYQRKFRYIHVDEYQDTNEAQYRLVHMLAEGYHNLCVV--GDADQSIYGWRGANMQNI 267

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      +P+  +  L       +  +    +V      R                
Sbjct: 268 LDFKK-----DYPKAQVILLEQNYRSTKTILSAANDVIKNNLNRQAK------------- 309

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADR 396
                    +         +    A +E +EAI +   +   + +N +     A++    
Sbjct: 310 --------TLWTENATGDKITYYRAQSETDEAIFVIRRIEAEMAQNHRKYGDFAILYRTN 361

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++    +  I   +  G             +    +   +D M+   +V  P   
Sbjct: 362 AQSRAIEEAFVKSNIPYKMVGGHKFYDRKEIRDALAYFRLVVNPDDDMSFNRIVNEPKRG 421

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G        A                      +   D    +          S  +  +
Sbjct: 422 IGNTSVAKLEA---------------------FANQHDWSLLEAAANAELSPISGKARGN 460

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                 ++  + Q    L   +  +         S +                  L  L 
Sbjct: 461 LAEFGKMIQRLGQRRKDLNVTEMMQAILDD----SGYLGALRAANTLEAETRVENLEELL 516

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
              +G                   ++  ++D +  L          E +  + ++    +
Sbjct: 517 SVTQGFDARYQPENE---------DSDIFVDFLAELALLSDQDEVEEDAQEVTLMTLHAA 567

Query: 637 RLLNFDTLILGGLNEGVWPKNTAK 660
           + L F  + L G+ EG++P + A 
Sbjct: 568 KGLEFPVVFLVGMEEGLFPLSRAA 591


>gi|158520299|ref|YP_001528169.1| hypothetical protein Dole_0282 [Desulfococcus oleovorans Hxd3]
 gi|158509125|gb|ABW66092.1| conserved hypothetical protein [Desulfococcus oleovorans Hxd3]
          Length = 279

 Score = 75.0 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 81/285 (28%), Gaps = 42/285 (14%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S ++I    N       + +         ++       G+  H  I    +   N    
Sbjct: 16   ISHNQIFTYCNCSLKYRFQYVEHRKP----ERVNIALPFGSAIHAAIEMYYRTLKNHGHE 71

Query: 830  EINHLMKQIIDSHFE--------------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
            E    + +   +  E                        +   +      + ++  +  Q
Sbjct: 72   ESVTAICERFQTCLELDLDNTDVPVIFKKDLPDRKAAVEMGHAMLRAFHENTVQTAQTAQ 131

Query: 876  SSIEKIFVNIPAKMAI-----ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
               + + V +P    +      +    L G  D +   +SG + + D KT   P      
Sbjct: 132  ---QIVAVELPLTSTLYTEEGHATEYKLAGILDLVLRDESGEIVVVDNKTAARP-MAQGT 187

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
               D Q++  A  L +  +  +   KV   F   + +K K   +       +A++     
Sbjct: 188  ANHDNQMTAYATLLASNRYV-LPKAKVKCRF--DILRKLKKPKLEQVNTTRNAEQ----- 239

Query: 991  LKNLIEIVTLLQNG-EQP-FISHLRLSEKSNIQSEYDHLARVAEW 1033
             K   +I   +  G +   F+              Y +  R  EW
Sbjct: 240  RKRFAKIANAVLAGIDAGIFLPQPS---WMCGDCAYSNACR--EW 279


>gi|297531123|ref|YP_003672398.1| recombination helicase AddA [Geobacillus sp. C56-T3]
 gi|297254375|gb|ADI27821.1| recombination helicase AddA [Geobacillus sp. C56-T3]
          Length = 1242

 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 71/794 (8%), Positives = 187/794 (23%), Gaps = 100/794 (12%)

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN-HPNGAIVLPGLDCHIPTAIWNTITEK 277
            A    +     +++     +      ++  V         +    D       +      
Sbjct: 399  AALEYQAQFDEVLVDEYQDTNLVQEAILQLVKKGSERTGNLFMVGDVKQSIYRFRLAEPM 458

Query: 278  STNITSSNTTY---STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
                     T        +  LA          +    L           MV  ++    
Sbjct: 459  LFLDKYKRFTADGEEGGMKIDLASNFRSRREVLDGTNFLFAQLMGETVGEMVYDEAAQLK 518

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR--------------- 379
              +D    +    ++  I +  +     E   E E A   A  +                
Sbjct: 519  YGADYPEGEDAAPEVMIINRQRAAEEDEEEAAEWEAAELEARLMAKKIKEIVSAPFYVYD 578

Query: 380  ----MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                       +   ++      A ++  +L   GI                SI+ SLL 
Sbjct: 579  RSSGQPRRAMYRDIVILVRSMTNAPQMIEQLQAQGIPAAADLSSGYFQATEISIMLSLLK 638

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             I   +  + +A +++ PL +F   E  + R  +                 + K     +
Sbjct: 639  VIDNPHQDIPLAAVLRSPLFRFDENELAMIRLADPKGTFYEALCSFRQKPAETKEEANAQ 698

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                     +  W++          +  +    Q    +      +       ++ D  +
Sbjct: 699  RKAAAFLERLEGWRTMARRRSLADLIWQLYRDTQFYDFVGALPGGRQRQANLRALYDRAR 758

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
               +          R +  L    +    +    +  +    +  ++ + ++     + G
Sbjct: 759  QYESTSFRGLFRFLRFIERLQERGDDLGAARPLGEQEDVVRIMTIHSSKGLEFPIVFLAG 818

Query: 616  ETVKPKIEK------------------SSTLFILGTLESRL--------------LNFDT 643
                                          L I       L              +    
Sbjct: 819  LARPFHTRDLHHPYLLDKELGFATRFVHPRLRISYPTLPLLAIQTKKRLELLAEEMRILY 878

Query: 644  LILGGLNEGVWPKNTAKN------PFLSRVMQSDLNLKTAEKYIGQAAHDF--EMANGTR 695
            + L    E ++   +  +       + S   +    L    +   ++  D+        R
Sbjct: 879  VALTRAKEKLYLLASVNDAAKEIEKWKSAASERGWLLPDDVRASARSYLDWIGRALIRHR 938

Query: 696  HL-IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                   +     + +  S W   ++        +  ++     +    +          
Sbjct: 939  DGGALAGTKAPEEVASHPSVWRVAIVPAADLRGEEAAREEMDDGVLLALEQGRPVPVGGG 998

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQ-------------LINDPYAVYARRILKL---DFIPH 798
             + +    L  +      + ++                        R+            
Sbjct: 999  WQKEVKRRLLWRYSYEKETAVRAKQSVSELKEQRALFGEQADEWRPRQGTAPVFSRPRFM 1058

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
             +K     ++GT  H ++  L  +    +   I   + ++++           +D     
Sbjct: 1059 QEKTLTPAEKGTALHVVMRHLDLQAPL-DESSIRSQIVRLVEKELLSAEQAEAVDP---- 1113

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI------------ESIGIHLTGFADRID 906
                I+  F     +   +  ++   +P  + +                + + G  D + 
Sbjct: 1114 --AAIAAFFTADLGRRLCAAREVHREVPFSLGLKAAELYGGEGTESGRRVLVQGVIDCVF 1171

Query: 907  LLKSGFVDITDYKT 920
              + G+V I DYKT
Sbjct: 1172 ADECGYVMI-DYKT 1184


>gi|239787414|emb|CAX83889.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [uncultured
           bacterium]
          Length = 1183

 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 97/931 (10%), Positives = 208/931 (22%), Gaps = 87/931 (9%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE--ITGKKSTILPIIKSLG 82
           LL   LV+ FR +P  P  L S  I V +    Q L+    E    G        I +  
Sbjct: 20  LLRDDLVDRFRREPSAP--LESEIILVQSNGMAQWLKLGLAETGGRGGGGGSGLGIAAAL 77

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD---LYPESPLSLP 139
           +++        +    L       +   +  RL+      LP I  +         L   
Sbjct: 78  ELLLPARFLWRIYRSVLGEAAVPEETPFDKTRLVWRLMRLLPGIAAEERFAPLRHFLRQD 137

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM------------WWLLAA-- 185
                   L+  LAD+ D  +     W    A   +                 W  A   
Sbjct: 138 ADQRKCYQLSVRLADLFDQYQVYRADWLACWAKGEDLLIDARGRRSAIPEEQRWQAALWR 197

Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
             +   ++            + V           + L  G    + + G +     +  +
Sbjct: 198 LLIADVARTGAGVDAVSGGRAEVHAAFLRRARTEDLLPAGLPRRVTLFGISALPYQSLEV 257

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTI-----------TEKSTNITSSNTTYSTHPQY 294
           +  ++      + +     H    +                               H Q 
Sbjct: 258 LMALSRWTQVLMYVHNPCQHYWADVIAGRELFRARRGQRGGAHGVAEPVPEALLHLHAQP 317

Query: 295 SLAKL-------LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD--------- 338
            LA         +  L+    +           +                          
Sbjct: 318 LLAAWGMQGRDFIGLLEDAVGEGALWAEGEPLAFDVEREACFVARGGAAGTLLQQLQEDI 377

Query: 339 ---MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSAL 391
                  +      P   +    +    A   + E   +   L  +L+ +     +   +
Sbjct: 378 LELRPLDETRALWPPVDAQQDRSLCFHVAHGAQREVEILHDQLLDALNADPSLSPRDILV 437

Query: 392 ITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
           +  D +        +           I   +         L    L  LL          
Sbjct: 438 MVPDIDAYAAHIQAVFGLHGANDPRFIPFVVVNRTRRKADLLLMTLERLLGLARARVTAN 497

Query: 445 AIATLVKHPLAKFGF--PEKYLSRAKNALELVALRG--------------NKNSYDIMDL 488
            +   ++ P  +  F   E  L   +  +    +R                         
Sbjct: 498 DLLDWLELPALRRRFGIAEADLPLLRRWIRDSGIRWGLDASHCGAVLGVPGGEIDGTRTR 557

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGN 547
            +                           +   L    +L  +  L    +         
Sbjct: 558 HTWRFGLERMLLGYAVGDRGAPWCGIAPFDEIGLGDGELLGRLADLVAAVEATWRQMKSA 617

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +++ W       L      E               L +  +   E             +
Sbjct: 618 ATVAAWCGRLRGVLARFFAPEEEDADAYTLLRLDAHLDAWEALCAEAQLVDPLPVTVVGE 677

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                ++   +  +   +  +     +  R + F  + L GLN+G +P+   +  F    
Sbjct: 678 YWLSCLEEGGLS-QGFFAGAVTFATLMPMRAIPFRQVCLLGLNDGAFPRPGNRIDFDLMG 736

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLV--LG 723
            +     ++  +          + +    L      R   +N     S  + +L      
Sbjct: 737 GRYRPGDRSRREDDRYL-FLEALLSARERLALFWVGRGIHDNAVAPPSVLVGQLRDHLAA 795

Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
           G          G         L        + R       E   R ++++   +   +  
Sbjct: 796 GWRLAGGADPAGGSGQALVAALTVEHPLQPFSRDYFCRGAETDARLFTYAHEWRPAREAG 855

Query: 784 AVYARRI--LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
           A  A  +  + L      ++     +   LF + +    ++R+          +      
Sbjct: 856 APAALPVGSVPLLPPVTREEPLRLVELARLFKDPVRGFFQQRLGVRFEREALFLDDHEPF 915

Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
             +       ID +            LE   
Sbjct: 916 DLDALEHWQSIDALLACREPDALDRGLERLR 946


>gi|218660128|ref|ZP_03516058.1| hypothetical protein RetlI_11042 [Rhizobium etli IE4771]
          Length = 102

 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 7/86 (8%)

Query: 959  NLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
            +L Y+RL+   +        +      K  SA +L+E+S+  LI+ V+LLQ+GE+ F S 
Sbjct: 9    DLLYVRLRPGNRFQVDMVNNENAARSDKAKSAIDLAEESVDQLIKFVSLLQSGEKGFTSR 68

Query: 1012 LRLSEKSNIQSEYDHLARVAEWREEY 1037
            L  +++ +   +YDHLARV+EW    
Sbjct: 69   LIPAQQFDFGGDYDHLARVSEWSTAE 94


>gi|302867411|ref|YP_003836048.1| hypothetical protein Micau_2940 [Micromonospora aurantiaca ATCC
           27029]
 gi|302570270|gb|ADL46472.1| hypothetical protein Micau_2940 [Micromonospora aurantiaca ATCC
           27029]
          Length = 300

 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 14/195 (7%)

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
             P       + S S        P     R I +L   P  ++      RGTL H ++  
Sbjct: 10  AAPAPVTVRASLSPSRAADFKTCPLLYRFRSIDRLPERPTVEQA-----RGTLVHAVLER 64

Query: 819 LIKKRINKNTPEINHLM-----KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HE 871
           L        TPE    +      +++    E   L    D +    F + + + L+    
Sbjct: 65  LFDLPAAARTPESAGDLVVPQWDRLVTEEPELATLFADGDAVGPQEFLRSATALLDGYFA 124

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
            +    +E           ++   + + G+ DR+D+   G + + DYKTG  P++    +
Sbjct: 125 VEDPRRLEPAEREALISAVVDD-ELLIRGYLDRLDVAPDGALRVVDYKTGGAPREAFEAR 183

Query: 932 LIDPQLSLEAAALKA 946
            +  QL   A  L  
Sbjct: 184 AL-FQLKFYALVLWR 197


>gi|296117889|ref|ZP_06836472.1| RecB family exonuclease [Corynebacterium ammoniagenes DSM 20306]
 gi|295969120|gb|EFG82362.1| RecB family exonuclease [Corynebacterium ammoniagenes DSM 20306]
          Length = 249

 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 74/252 (29%), Gaps = 32/252 (12%)

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
               R I +L              +GTL H  +    K               + +   +E
Sbjct: 3    YRLRAIDRLPEPKTI-----AQVKGTLVHAALE---KTHELPRAERTYPRAVKFLKPEWE 54

Query: 845  KENLPPHIDIIWRHLFHKISHSFLE--------HEEKIQSSIEKIFVNIPAKMAIESIGI 896
            K       +++      +     +E         + +     +   V +     + +  +
Sbjct: 55   KMCADDA-ELVELVPHDQTLDFLIEARDLVKGYFQMENPQGFDAKAVEMYVDTVLPNQ-V 112

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             + GF DR+D   +G V + DYKTG  P+          Q+   A          +   +
Sbjct: 113  PVRGFIDRVDEAPTGEVRVVDYKTGKKPRP-QYAHDAQFQMRFYALVYWR--IHGVIPAQ 169

Query: 957  VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016
            +  L Y+++     +     +          E   ++L  +   ++   +  I   +   
Sbjct: 170  L-RLMYLKVFDSMFLMPSREE---------LEYFERDLGTLWAKIEGDGKEGIFRPK-KS 218

Query: 1017 KSNIQSEYDHLA 1028
            K      +  L 
Sbjct: 219  KLCGWCSFQELC 230


>gi|229551867|ref|ZP_04440592.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1]
 gi|258539285|ref|YP_003173784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705]
 gi|229314811|gb|EEN80784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1]
 gi|257150961|emb|CAR89933.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705]
          Length = 750

 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 78/624 (12%), Positives = 168/624 (26%), Gaps = 97/624 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVS 104
           ++     T +A +E+R    ++   +      + +   +       D+  L YN    ++
Sbjct: 56  NILAITFTNKAAREMRERVGKLVDPEIARDIWVSTFHALCVRILRRDIDKLGYNRAFTIA 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +    L L + IL           D   +     P S   AI  AK           E  
Sbjct: 116 DPAEQLTLVKHILA----------DFNLDPKRYDPKSILGAISGAK----------NELI 155

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
             +       +    +    A         + +RL    A       +  +    +    
Sbjct: 156 DPQTYS--DEQANSPFTKTVAQ----VYAEYQKRLRSDQALDFDDLIMQTIVLFEKDPET 209

Query: 225 G-----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I +     +  A  RL+  +A   +   V+   D       W     ++ 
Sbjct: 210 LGFYQRKFRYIHVDEYQDTNEAQYRLVHMLAEGYHNLCVV--GDADQSIYGWRGANMQNI 267

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      +P+  +  L       +  +    +V      R                
Sbjct: 268 LDFKK-----DYPKAQVILLEQNYRSTKTILSAANDVIKNNLNRQAK------------- 309

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADR 396
                    +         +    A +E +EAI +   +   + E+ +     A++    
Sbjct: 310 --------TLWTENATGDKITYYRAQSETDEAIFVIRRIEAEMAEHHRKYGDFAILYRTN 361

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++    +  I   +  G             +    +   +D M+   +V  P   
Sbjct: 362 AQSRAIEEAFVKSNIPYKMVGGHKFYDRKEIRDALAYFRLVVNPDDDMSFNRIVNEPKRG 421

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G        A                             A Q + + +    +      
Sbjct: 422 IGNTSVAKLEA----------------------------FANQHDWSLLEAAANAELSPI 453

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
              A   +    + I  L   + + N T    +I D +    T      L+   ++ NL 
Sbjct: 454 SGKARGNLAQFGKMIQRLGQRRKDLNVTEMMQAILDDSGYLGTLRAANTLEAETRVENLE 513

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                  L S+             ++  ++D +  L          E +  + ++    +
Sbjct: 514 ------ELLSVTQGFDARYQPENEDSDIFVDFLAELALLSDQDEVEEDAQEVTLMTLHAA 567

Query: 637 RLLNFDTLILGGLNEGVWPKNTAK 660
           + L F  + L G+ EG++P + A 
Sbjct: 568 KGLEFPVVFLVGMEEGLFPLSRAA 591


>gi|255030233|ref|ZP_05302184.1| hypothetical protein LmonL_16171 [Listeria monocytogenes LO28]
          Length = 320

 Score = 74.6 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 58/184 (31%), Gaps = 18/184 (9%)

Query: 830 EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIP 886
           ++  L    +    + E L         ++   +I      + +E+   S+   + + + 
Sbjct: 14  QMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEVD 73

Query: 887 AKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQKL 932
             +  +   +           L G  DRID+ +      + I DYK+  +          
Sbjct: 74  FGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEVYYG 133

Query: 933 IDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
           +  Q+      +   +   I    + A + Y  +  ++         +  + +      +
Sbjct: 134 LALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKSSKM 193

Query: 992 KNLI 995
           K LI
Sbjct: 194 KGLI 197


>gi|294790511|ref|ZP_06755669.1| UvrD/REP helicase subfamily [Scardovia inopinata F0304]
 gi|294458408|gb|EFG26761.1| UvrD/REP helicase subfamily [Scardovia inopinata F0304]
          Length = 1578

 Score = 74.6 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 63/619 (10%), Positives = 162/619 (26%), Gaps = 85/619 (13%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE------------ 160
           A L+        ++   +       +  +        +   D++D               
Sbjct: 201 AALVKDVLALSAELSNSMISPDCPGIKEAVDQVSRWDQAFLDLVDRYAAQADSEADSGTG 260

Query: 161 -TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW-TERLVELNASSPVGYQIALMRAE 218
             E+KK  D   L  +K      +  + +    +    + L E +  +   +Q+AL    
Sbjct: 261 REEDKKPLDSRLLDMQKATRRRQMLLEMVLAYDQAKKDQSLAEFSDFTIAAFQLALRYPW 320

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP------NGAIVLPGLDCHIPTAIWN 272
                +     + +     +    A+L++ + + P          V    D +     W 
Sbjct: 321 IRSEYREKFSHVFLDEYQDTSTTQAKLLTLLFHDPLPGAESAPTYVTAVGDPYQSIYAWR 380

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             +  + ++   +            + ++ +     +   + + +N +           L
Sbjct: 381 GASPGAFSLFLKDYGMKE-------EEIERMSYTWRNPALVLDAANRLTNPIRSDQADPL 433

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---- 388
              ++  R    ++       K  + V L+      +EA  IA     ++ +  ++    
Sbjct: 434 RQASAITRQEVSVDQLSYIDSKDDATVGLMGYPTVAQEADGIARFAHEAIKQAHQRVDAR 493

Query: 389 --------------------SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
                                AL+   +         L+R G+  +I+    L     S 
Sbjct: 494 KAAHGFKNEEEYWAEYGKTHVALLLRAKTHRNIYCQALSRLGLTYEIAGDQSLWDRPDSQ 553

Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS------------RAKNALELVAL 476
            L +LL+ +    D  +   L+          +  +             R          
Sbjct: 554 DLLALLSLVTDHTDSASALRLLATDRFGLSKNDLSVLSYMAQSLDNDYKRQALQQLTDQK 613

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED-----KELAVLLVDHILQCI 531
           R   N                      ++          D      +            +
Sbjct: 614 RQEGNGTGQEVSDREFRQLRGQLPTGVYLTDLLEWDDFPDSYRQWADSHRETQAISQVGL 673

Query: 532 TPLVTYKTNKNSTCGN--LSISDWTKLTVTCL---------QNVCLDEHRKLPNLWFEEE 580
             +            +    I D        L         Q +        P+      
Sbjct: 674 QQIAKASAMIRDLDAHLDQPIEDVVSYASKLLTLDIDASVSQAIAQGWAADTPSRSCLSA 733

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI----EKSSTLFILGTLES 636
            + L+  +++  E      A    ++  +T   +  T +         +  + ++   ++
Sbjct: 734 FQDLAQTYAR--EIADGQSATLTGFVAWLTANKENPTDEFVGGSVLSDNPDVVVMTVHQA 791

Query: 637 RLLNFDTLILGGLNEGVWP 655
           + L +D + +GG+    +P
Sbjct: 792 KGLQWDAVAVGGMGAQTFP 810



 Score = 46.5 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 50/180 (27%), Gaps = 23/180 (12%)

Query: 806  TDRGTLFHNIITEL-----IKKRINKNTPEINHLMKQIIDSHFEKENLP-----PHIDII 855
               GT FH    E      +  +    + +     +Q I     +E              
Sbjct: 1337 AQHGTEFHEWAQEFILPSSLSSQGEHLSGQAWKEYRQKISREVAQEVSRITNLMSAPAEG 1396

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG---IHLTGFADRID--LLKS 910
             +    ++          + +  E           IE       HL G  D +    L  
Sbjct: 1397 GQTDVPQLLRWKNNLLHSVWAGREAWAAEQSITDTIEGGDGSIYHLRGSLDAVFYGRLND 1456

Query: 911  -------GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963
                    F  I D+KTG  P +   +     QL +    L       ID  + A L+Y+
Sbjct: 1457 DPNNPTENFYTIVDWKTGHKPGRPAEKAEKLAQLDIYRLMLSDLLGIGIDQIE-AQLYYL 1515


>gi|166709996|ref|ZP_02241203.1| exodeoxyribonuclease V gamma chain [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 1137

 Score = 74.6 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 104/959 (10%), Positives = 222/959 (23%), Gaps = 121/959 (12%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
            E  R  P  PLL   V + +P     + L+S      G  + +     + G+ V     
Sbjct: 26  QELRRPVPGQPLLQPEV-VLIPQVAMRRWLQSTLAAEHGVAANL--EFLTPGEFVARALE 82

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
            +L  + +     +   RL                    L P +             LA 
Sbjct: 83  RNLGAADDDLDMATTQWRL-------YAALQSDLGRDAALAPLADYLADGDALKPWALAG 135

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            L  + +  +   + W  L                  +                      
Sbjct: 136 ELGSVFEKYQAWRRDW-LLRWEGGADPDDPQARLWRSIA------------TGRQYRARR 182

Query: 211 QIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
               +   A       +G    +         P   R+++T A        LP       
Sbjct: 183 IGHYLDRHARADGPLPQGLPPRVFAFAILNISPDVLRVLATQARVGTLHFYLPTPTQGYW 242

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKL----------------LDFLDIKREDVK 311
             +      +  +               L                   +  L        
Sbjct: 243 GDLQTLRQRRREDGAVQLFAEHVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEITAYAD 302

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
            L +    +    +  S           R    +   +P +      + +        E 
Sbjct: 303 PLDSGRRTLADGGLGDSLLRRMQSDLFHRRAPAVPALLPAVNLHDPSLQVHACHTRLREL 362

Query: 372 ISIAIALRMSLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDISAGI 419
             +   LR  LD+         ++ A+++ + +        +         +   ++   
Sbjct: 363 QVLHDQLRALLDDPRFDPPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYALADAS 422

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY--------LSRAKNAL 471
           PL++   + +  +LL           I  L+                        A  A 
Sbjct: 423 PLASEPLAEVFLTLLGLPIARFGLHEILDLLASAPIAAAAGLDEAGLERLRSWLHAAGAR 482

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
             +     +      D        +                               L  +
Sbjct: 483 WGLDAAHRRQHQAPGDDAYTWRFALDRLLLGHASGTDDDIDGVAPWPQLEGSALAALDTL 542

Query: 532 TPLVTYKTNKNS-TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
             L+       +     ++  +W +  +  L+ +              +  +T+   F++
Sbjct: 543 LRLLRVLERHQAVLADAMTPVEWRERLLGLLEALIPTTPTAPHAQRALDRLRTMIDQFAR 602

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
                        E +      + GE+       +  +     +  RLL F  + L G+N
Sbjct: 603 DAVRADYAGKVPAEVVRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRVICLLGMN 662

Query: 651 EGVWPKNTAKNPF------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
           +G +P+             L    +   +  T E         F  A    +L Y  +  
Sbjct: 663 DGDFPRRDPAAGLNRLTAELGTDRRRHGDRSTREDDRFLFLQLFASAQEVFYLSYLGADA 722

Query: 705 ENNIPTIASRWLQRL-------------------------------LVLGGTDFFDNLKK 733
            +      S  +  L                                 LG         +
Sbjct: 723 RDGSVREPSVLVSELLASAAHYHAASNALDTLVVRHPLQPFAAAAFGALGDESDAGADPR 782

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS----EIKQLINDPYAVYARR 789
           R      W   +D    Q     P     L A       S    E+++L  DP   + R 
Sbjct: 783 RFSYRRQWRPAVDSLVGQRQPLAPWVAGALPADDTALQASVSIDELRRLFADPAGQFLRH 842

Query: 790 ILKLDFIPHFKKDPD-----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
            L +       +D D        RG   + +  ++ +  +  +T  +   ++        
Sbjct: 843 RLGMRLPDPGGEDSDLEPLLAPTRGLDQYGLQQQVFEAALAGDTESLYERLRA---RALL 899

Query: 845 KENLPPHIDIIWR-HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                    +  R       + +F +   +  +   +        + ++   I L    
Sbjct: 900 PSGPLGRRQLDERVAQLRPYADAFRQWRGQSPAESRR--------LQVQIGDIELHARV 950


>gi|86159793|ref|YP_466578.1| ATP-dependent DNA helicase Rep [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85776304|gb|ABC83141.1| ATP-dependent DNA helicase, Rep family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 671

 Score = 74.6 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 69/716 (9%), Positives = 150/716 (20%), Gaps = 106/716 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             +     Y  +  +    V     T +A  E+R     + G             DV   
Sbjct: 34  RVIAHRVAYLLVQGVDPEQVLAVTFTNKAAGEMRERVAALAGPPGV---------DVFVS 84

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
            F +  L         + + R   +            D    L         +S  +  +
Sbjct: 85  TFHSFGLWLLQQEHEAAGLPRRFAIC-----------DAGDQLALVKRCMREVSVDDRKF 133

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            A  +  ++   +   KK                             + + L  + +   
Sbjct: 134 DAHRVLSLVSRAKNAGKKRIVPREAGQGDDYDLVAA------EVYPRYEKALRAMRSVDF 187

Query: 208 VGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                  +   A         +     +++     +  A   L+  ++       V    
Sbjct: 188 DDLIARPVAMLAHDPALRARCQERFRYLLVDEYQDTNAAQLELLKLLSGERRN--VCAVG 245

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       W     K+      +                            G     +  
Sbjct: 246 DDDQAIYGWRGAEVKNILRFERHFP--------------------------GAKEVRLEQ 279

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                       +    +N       +         V ++    E +EA  +A  +    
Sbjct: 280 NYRSTGHILACANAVIAKNAARKPKALFTADGPGEPVRVVAMPEEEDEARFVAEEIARQR 339

Query: 383 DE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
            E       A++     L+R  +       +   +  G           L + L    + 
Sbjct: 340 GEGRPWSHFAVLFRLNALSRPFEEAFREASMPYRVHGGPAFFDRSEVRDLLAYLKLCVQP 399

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
            D ++++ +V  P    G                                          
Sbjct: 400 EDDVSLSRIVNVPPRGIGDTSMERVH---------------------------------- 425

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
           +           +         L     + +   V       +      +S+  +  V  
Sbjct: 426 DWAIPRKLHLLEAMRRAAEIPDLPRGAAEKVGAFVALVDRFQARFREGPVSEAARALVAE 485

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
           +                      L  L   +   G   +         + RL      + 
Sbjct: 486 VDLFSHVRAGVQSLEAGTRRVDALEGLLRSL--DGYVQRTARPSLATWLQRLALDSREEE 543

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
             +    + ++    ++ L F  + L G+ E   P    +        +  L      + 
Sbjct: 544 DPDGEGGITLMTLHAAKGLEFPVVFLVGVEEDYLPCAGIQGEARDLDEERRLAYVGITRA 603

Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
             +       A         RS R   +P   SR+L  L                 
Sbjct: 604 RERLYLTRVAA---------RSKRGKLLPRTPSRFLDDLPAGAHEQVDPAALAAPP 650


>gi|187736051|ref|YP_001878163.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426103|gb|ACD05382.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
          Length = 1054

 Score = 74.6 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 53/423 (12%), Positives = 124/423 (29%), Gaps = 20/423 (4%)

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            + PL+T    ++       +    +          L++          +  +   +++  
Sbjct: 620  LRPLITQGGPESMGWKEWRL--LLERDGYAAVMEELEQRLLRGGTELTDFHRDRLAVWQN 677

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
              E       +  EWI  +  L      + +   +  + I+   +S+ L FD +IL  + 
Sbjct: 678  EAEQVDEQGVSLDEWIRRMEDL-----TRREDPAAGIVRIMTIHKSKGLGFDIVILPQIG 732

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
                    A    L+  ++ +         +  + H +      R L      R+     
Sbjct: 733  RDTPF---ADGRHLTHFIKKNGEGGVEGIVLAPSRHVYMNIPQFRELYGEWRARQQFDGF 789

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
                                 + + +   D   K+  ++ +P  +  +   P       Y
Sbjct: 790  CKLYVALTRAKRATYVILPYREDKEETEADSMWKVVRSSIRPLNRGTEDILPESGASCLY 849

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S          P ++  ++  + + +    + P   +R +           +        
Sbjct: 850  SRGLDGWYEEFPESI--QKRAEKNALEWPPQKPLARERISPSGLSEEASPLQGEKHAGAG 907

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHL-----FHKISHSFLEHEEKIQSSIEKIFVNI 885
                +   + + FE+       +     L       +I    +E     +         I
Sbjct: 908  KAAALGSAVHAVFERITRWDDENKPAWALHPATEAERIVAECMEIPSIRELFTPPETARI 967

Query: 886  PAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
              +  IE+I  +  ++G  DR+ L   G   I D+KT      E  ++    QL+  A  
Sbjct: 968  MKEQRIEAIDGNNWISGIIDRLILDGDG-ARIVDFKTDHADTPEQLREHHANQLNAYARI 1026

Query: 944  LKA 946
            +  
Sbjct: 1027 VSR 1029


>gi|269977490|ref|ZP_06184462.1| putative UvrD/REP helicase family protein [Mobiluncus mulieris 28-1]
 gi|269934406|gb|EEZ90968.1| putative UvrD/REP helicase family protein [Mobiluncus mulieris 28-1]
          Length = 1180

 Score = 74.6 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 56/445 (12%), Positives = 120/445 (26%), Gaps = 32/445 (7%)

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              +     ++++                    + +L  ++ G   ++L            
Sbjct: 653  AASRHWKVVAVAGLNDGAWPSRSWPGDLLGTSMFDLSRDDTGTDCANLEVIKAGFQWSFH 712

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
            A+   ++  ITR    ET+               +     N   ++   + E        
Sbjct: 713  ADLRRFLAAITR--ATETLVLGTTTGDFESPSPLVLRLADNPAIVVHKDVGEFTSKPEGT 770

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            +N        + L+   +      A            +            + A+  L  L
Sbjct: 771  ENSGAGTASFALLDNPPSNLRDMVARLRILTMLSDAQVQMLGVGS--AEQSEAASLLAWL 828

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                G+       +     L         T                       S ++ L+
Sbjct: 829  GNAPGSAARAANPENWMGIL-------RPTVVEPAVSAGETTVENKPVFRIRASGMESLL 881

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
            N+P+     R   L +    +++ +    GTL H +  E+ ++    ++ +    + ++ 
Sbjct: 882  NNPFDTEMSR---LGYEDEREEEYNAAIIGTLIHKVAEEMGRRHWYGSSCD--DKVDKLK 936

Query: 840  DSHFEKENLPPHIDIIWRHLFHKIS----HSFLEHEEKIQSSI-----EKIFVNIPAKMA 890
                 +E       ++                L +  K  +                +M 
Sbjct: 937  REEICEETAGLMEKLLEGSRAENWMFINFERRLNYLLKRMNEFLYDHQVPSLFECGYRMT 996

Query: 891  IES----IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            I        I  T   DR+   +SG + + DYKTG        +   + QL L   A   
Sbjct: 997  IPDSNNLGQISYTARIDRVLFTESG-IVLADYKTGSLTNYTKPKVANNLQLLLYQKAFNE 1055

Query: 947  GSFSQIDCRK-VANLFYI-RLKQKF 969
            G       +  VA+  +I  L+   
Sbjct: 1056 GRPIGGAPQGLVADAAWIVGLRGDK 1080


>gi|296270957|ref|YP_003653589.1| hypothetical protein Tbis_2998 [Thermobispora bispora DSM 43833]
 gi|296093744|gb|ADG89696.1| hypothetical protein Tbis_2998 [Thermobispora bispora DSM 43833]
          Length = 306

 Score = 74.6 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 11/183 (6%)

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
             +  + + S +   ++         + +           +    G   HN +    +  
Sbjct: 10  PRRLYSCTPSRLNTWLDCRRRYRFTYLDRPAPPKGPPWAHN--SLGASVHNALAAWWRAP 67

Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
             + TP     +   +                WR    ++  +++        + E + V
Sbjct: 68  YERRTPATAAELVAGVW--ITDGFRDAEQSAQWRERARRMVAAYVSTL---DPACEPVGV 122

Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
                   E   I ++G  DRID  + G + + DYKTG  P  E   +     L++ A +
Sbjct: 123 ERVVATRTEV--ITVSGRVDRID-HRDGELVVVDYKTGRRPPTEQDARS-SLALAIYAIS 178

Query: 944 LKA 946
              
Sbjct: 179 ASR 181


>gi|322384701|ref|ZP_08058369.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150400|gb|EFX43893.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 913

 Score = 74.6 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 90/855 (10%), Positives = 209/855 (24%), Gaps = 132/855 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTI--LPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            + +   T +A  E+R    ++ G  +    L   ++   +  +    +      L    
Sbjct: 100 QILLVTFTSKAAAEMRERLADLPGISAVEAKLVGARTFHSLFLQVIRQEGCEDDLLTDQR 159

Query: 104 SN---IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
                ++RLL++A L   W  +        +  S LS    PA                 
Sbjct: 160 RPHFIMKRLLKIAGLQEAWEPETALSRLSAWKSSMLSPEEWPARTS-------------M 206

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
            ++ K   L                       + W +   +++    +     L     E
Sbjct: 207 EQQLKPVLLQ---------------------YEGWKKAEGKMDFDDILLEAHKLFTRHPE 245

Query: 221 HLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
            L +       I++     + P   +L+  +A       ++   D       +N   +  
Sbjct: 246 VLERIRRQYAYIMVDEFQDTNPLQYQLVRMIAE--PDCNLMAVGDDDQTIYTFNGARQAY 303

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       +P   +  L          +     V +    R      + +    + 
Sbjct: 304 ILQFE-----QQYPAARVITLDVNYRSGSSILGLANEVISHNEERRPKTLYTGIREKGT- 357

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD 395
                               V  +       EA +I   ++  +          A++   
Sbjct: 358 --------------------VQYLSPLTTDHEAEAILEHIKQQVGKGKRKYGDIAILHRT 397

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTL-HSSILTSLLNAIFKLNDFMAIATLVKHPL 454
            + +R     L    I         L         + + L       D  A   ++    
Sbjct: 398 ASYSRAFFERLLMEDIPFVQYGNSDLFYRHWLIRPVLNHLRLALNSRDMKACEGVLLTLY 457

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                   ++   +            +  D  DLK    +++            +   S 
Sbjct: 458 IAKEKGASWIREKEKKKAKKWP--LIHLMDHPDLKENQKEKLME--------RLKMIKSL 507

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           +  +    +    ++     +     +  T    ++ +      T  +     E      
Sbjct: 508 QAFKPEEAIRQIRIKFYDAFIDAYDPEPDTQYKETLKEMLDELETSARRFTGLEE----- 562

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                                       + ++D IT          K ++S  L ++   
Sbjct: 563 ---------------------------FLGFVDRITDKYMVMESLKKEDESDALKLMTIH 595

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            S+ L F  + L G++E V P +T+      +  + +     A     +    +      
Sbjct: 596 RSKGLEFPVVYLIGVSERVLPHSTSLKKEGCKDNRFEGEHGAAAALEEERRLAYVAVTRA 655

Query: 695 R-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
           +  L  +            SR++ +         F++ + R                   
Sbjct: 656 KEELYISSPGYYRGKQAHVSRFILQ--------PFESRRSRVSNTAQPVPASAAKKPSAI 707

Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
             R  P     +  +T   +++        +    R  + D           T      H
Sbjct: 708 QDRSMPEMGNASDKKTV-RTQVYTAGYGTNSSQPERKARHDQPKLVSPAASVTSLSVYTH 766

Query: 814 NIITELIKK-------RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
            +   L ++        +              I+     EN P            ++  +
Sbjct: 767 TVTKSLDRQPVSAVDSYLKPAPAAAPSFSISSIEKKERPENKPKLTKEEKADRAARMLAA 826

Query: 867 FLEHEEKIQSSIEKI 881
            +E  +K  S     
Sbjct: 827 KIESGQKSASPSRPA 841


>gi|311896487|dbj|BAJ28895.1| putative ATP-dependent DNA helicase PcrA [Kitasatospora setae
           KM-6054]
          Length = 885

 Score = 74.6 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 69/711 (9%), Positives = 184/711 (25%), Gaps = 77/711 (10%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +        + P     +     T +A  E+R     + G ++  +  + +    
Sbjct: 133 VLTHRIAHLLAARGVQP---GEILAITFTNKAAGEMRERVEALVGPRAKAM-WVSTFHSA 188

Query: 85  VEEKFTADL-LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                  +   L  N +  + +      L  L+    +  P                   
Sbjct: 189 CVRILRREAKQLGMNSSFSIYDSADSQRLMALVCRDLDLDPKQFPPK------------- 235

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                   ++++ + +  EE   +                    L  A   +  RL E N
Sbjct: 236 ---SFTSKISNLKNELIDEETYADQASN-----------PTEKKLAEAYFLYQRRLREAN 281

Query: 204 ASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
           A       +A +             +     I++     +  A   L+  ++    G   
Sbjct: 282 ALDFDDIIMATVNLLQAFPAVAEHYRRRFRHILVDEYQDTNHAQYTLVRELSGGSAGQAP 341

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               D          + +            +    Y+         ++ E+       + 
Sbjct: 342 RMTADGEYVNPAEAQLAQLPPAELCV-VGDADQSIYAFRGATIRNILQFEEDYPN-ATTI 399

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            +              ++   RNT+  +  +         V    AD+E  EA  IA  +
Sbjct: 400 LLEQNYRSTQTILTAANSVIERNTNRRKKNLWTAGDQGEQVVGYVADDEHGEAQFIAEEI 459

Query: 379 RMSLD---ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
               D         A+       +R  +    R G+   +  G+          + + L 
Sbjct: 460 DRLTDGGHARPGDVAIFYRTNAQSRVFEEVFIRVGLPYKVVGGVRFYERKEVKDVLAYLR 519

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN-KNSYDIMDLKSLVLD 494
            +    D + +  ++  P    G   + +  A  + E ++     +   +   + +   +
Sbjct: 520 VLSNPEDTVPLRRILNVPKRGIGERAEAMIDALASRERISFAAALRRVDEAYGMAARSAN 579

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            +                      +   +++         +   T+        ++ +  
Sbjct: 580 AVKKFNELLAGLRQVVESGAGPAAVLEAVLEETGYLAE--LQSSTDPQDETRVENLQELA 637

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            + +   ++                                     +  ++++ +  + D
Sbjct: 638 SVALEYEKDPGERPEG-----------------------DEGPPVGSLADFLERVALVAD 674

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
            + +    + S  + ++    ++ L F  + L G+ +G++P   A +          +  
Sbjct: 675 SDQIPDDEDGSGVITMMTLHTAKGLEFPVVFLTGMEDGIFPHMRALD---------KVKE 725

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
              E+ +                   RS         ASR+L+ +      
Sbjct: 726 LEEERRLAYVGLTRARQRLYLTRSVLRSAWGQPSYNPASRFLEEIPEKLIE 776


>gi|169634461|ref|YP_001708197.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii
           SDF]
 gi|169153253|emb|CAP02354.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter
           baumannii]
          Length = 688

 Score = 74.6 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 64/574 (11%), Positives = 144/574 (25%), Gaps = 67/574 (11%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    Y     L    + I   T+RA  E+ +   +  G ++  L    +       
Sbjct: 66  KTIVARAAYLVDQGLPANQIQILTFTRRAASEIVARVEQHVGAQAKGL-RASTFHTFCMY 124

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +          + +    L + RL+     K  D +     E       +      
Sbjct: 125 LLRRNPQAFGLTQFSIIDRDDQLLMFRLLRG---KDKDNVLPKAAELCDLYSYARNTQSK 181

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD--FLKIASKYWTERLVELNAS 205
           L++ L   +      +     +  L       +     +  FL      + + L      
Sbjct: 182 LSEALLKQLPEAYEYK---SQIAEL----MKTYEQRKRERNFLD-----YDDILS---IV 226

Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                   ++       + G    +++     + P    L+  +        +    D  
Sbjct: 227 DVHLQNSEVLTN----WVAGFCQALLVDEMQDTNPLQWALLQPLIGKVK---LFCVGDDA 279

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     ++ +                  ++  LD+     + + ++SN +   S 
Sbjct: 280 QSIYGFRGADFENIHSFKERIPD---------AVIHTLDLNYRSTQEILDLSNWLLAHSP 330

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
           +  +  L       +                    L    NE EEA  IA  L     + 
Sbjct: 331 IDYQKQLQAHRGKGQKPQ-----------------LHLFGNEFEEANWIAQDLIERHQQG 373

Query: 386 KKKS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                  ++      AR ++       I      G+ L  + H   + SLL  +    D 
Sbjct: 374 ANWYDHMVLVRSGYSARYLEGAFIAAEIPYRFIGGVKLLESAHVKDVLSLLRIVSNPQDD 433

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
           +A    +       G  +   S+    L  +     +        K  +           
Sbjct: 434 LAWMRFLT---LWDGIGDVGASKLAQELMSICEVEERCQRLERHGKVPLQ--------AI 482

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
            +      L +  +    L +D + + +      K           +    +   +  + 
Sbjct: 483 LILKQLDVLQQHVEASIGLALDALSEQLEQNYKTKDWSRRVRDFDLVKQLARKHASLGEF 542

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
           +       +     E+ G         I      
Sbjct: 543 LEEYVLEPISISEIEKAGDDDLVTLITIHSAKGA 576


>gi|229494271|ref|ZP_04388034.1| exodeoxyribonuclease V, gamma subunit [Rhodococcus erythropolis
           SK121]
 gi|229318633|gb|EEN84491.1| exodeoxyribonuclease V, gamma subunit [Rhodococcus erythropolis
           SK121]
          Length = 1093

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 92/880 (10%), Positives = 241/880 (27%), Gaps = 61/880 (6%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L   L    R    +P   A  T+ VP K   + L        G          S  ++ 
Sbjct: 13  LVSALATLLRTPLSDP--FARETVAVPAKGVERWLNQRLSSQLGTSGPSAVDGIS-ANIA 69

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                  +  S      ++         RL+    + + + + + +              
Sbjct: 70  FPSPARLVAESVAAVSGITADDDPWSPTRLVWTVLDVIDESLGEPWCGVLAKHLEGHREG 129

Query: 146 IWLAKN--LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
              A    + ++      +  +   +            L  ++  +  ++ W     +++
Sbjct: 130 RRFASATHVTELFRSYAAQRPQM-LIDWAAGRLTDGHGLALSEDFEWQARLWCIVADKID 188

Query: 204 ASSPVGYQIALMRAE-AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
              P      + RA   +  +      + + G T        ++S ++ + +  I LP  
Sbjct: 189 VPGPAERLGQVSRALVEDPALVDLPERLSVFGPTRLPVDQRMILSALSANRDVHIWLPHP 248

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
              + T + + I  +S +    +   S     +L      L     DV+ L         
Sbjct: 249 SPALWTKMSSRIPPRSESTIRRSEDGS-----ALISANPLLSSLARDVRELQISLGAAEF 303

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAISIAIALRMS 381
            S+ + +   P         D++ ++ P++       V +        +   +   L   
Sbjct: 304 ESVHLPEPAGPKSLLATVKADVIADRAPSVAAEPDGTVQVHACHGPARQVEVLRECLLRL 363

Query: 382 LDE----NKKKSALITADRNLARRVKLEL--------TRFGINIDISAGIPLSTTLHSSI 429
            ++      +   ++  D      +                + + ++      +    ++
Sbjct: 364 FEDDPTLQPRDVLVMCPDVETYAPLVRAAFGQGVHGHPGHLLRVRLADRGLRQSNPVLAV 423

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAK----FGFPEKYLSRAKNALELVALRGNKNSYDI 485
           L SLL           +  L      +    +G  E    R                   
Sbjct: 424 LGSLLELADGRATASEVLDLAATEPVRTRFSWGDDELERLREWTTEAGARWGIGSRQRAT 483

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL-------VDHILQCITPLVTYK 538
             L +   +   T  +   +            +LA+ L       +D   +    +    
Sbjct: 484 FGLDAFPQNTFNTAMDRILLGVSADESENAWLDLALPLDDVDGTDIDLTGRFAEFVDRLA 543

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
            +     G  S ++W ++ +  L  +                           +E G   
Sbjct: 544 VSLRDLAGPHSPAEWLRVLMRALDLLTDTAPADSWQS------AGAHRELVAAVEFGGET 597

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                +   +++R + G   +        L +   +  R +    ++L GL++ V+P+  
Sbjct: 598 VLRLADVRAMLSRSLAGRPTRANFRTGE-LTVCTMVPMRSVPHRVVVLIGLDDEVFPRTG 656

Query: 659 ---AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
                +      +  + +L++ ++ +   A    + +   HLI   +  +     +    
Sbjct: 657 GVDGDDILSRDPVVGERDLRSEDRQLLLDA----VMSAGEHLILLYTGADPVTGVVRPPA 712

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
           +    +L                     +         +K         A  R  + + I
Sbjct: 713 IPLSGLLDVLSATVGPDAVNGVLTRHPLQSFDNRNFAPHKPFSFDTAALAGARAAAGTPI 772

Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
           +             +L  + +    K+ +  D      +     +++R+    PE++  +
Sbjct: 773 E----------LPTVLSAELLEVHPKEVNLADLVNFLVHPARGFLRQRLGVRVPELDDDI 822

Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFH-KISHSFLEHEEKI 874
              + +  +  +     D +       + S  F   E + 
Sbjct: 823 ADSLATELDPLSTWALGDRMLLSRLAGRSSADFRAAEWRR 862


>gi|258654034|ref|YP_003203190.1| exodeoxyribonuclease V subunit gamma [Nakamurella multipartita DSM
           44233]
 gi|258557259|gb|ACV80201.1| exodeoxyribonuclease V, gamma subunit [Nakamurella multipartita DSM
           44233]
          Length = 1141

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 94/873 (10%), Positives = 211/873 (24%), Gaps = 45/873 (5%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTIL------PIIKSLGDVVEEKFTADLLLSYNLNP 101
            + VPT+   + L        G +              S   +V+E         +  + 
Sbjct: 34  VVAVPTRGVERWLTQRLAHRLGTRDGRSDGICAAVRFPSPTTLVDELAGDRADDPWTPDA 93

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            V  +   +E A +   W   L + +     ++          A+  A+ +A + D    
Sbjct: 94  AVWPLLAAIE-ASVHEPWCALLAEHLGYRGDDAQAEHRRGRRYAV--ARRIAGLFDGYAE 150

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA-LMRAEAE 220
              +     +        W       L    + W      ++A  PV        R  A+
Sbjct: 151 HRPEMVAAWSQG-GDDDGWGEPVPADLSWQPRLWRRLRDRIDAPDPVATFAQVAARLAAD 209

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    + + G+T        L+S +A+H +  + LP     +   +          
Sbjct: 210 PGAVDLPERVSLFGATALPHRQVLLLSALAHHRDVHLWLPHPSPVLWDRVGELRPPVPGR 269

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDV--KRLGNVSNEMYGRSMVISKSFLPPDTSD 338
           I   +   +    + L   +     +   V   R+   +              L  D SD
Sbjct: 270 IRRRDDPTAGAATHPLLASMGRDVRELRTVLAGRIDRDTWHRADDPPATLLGRLQRDLSD 329

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI----ALRMSLDENKKKSALITA 394
            R         P +      V +  A     +   +       L      +     ++  
Sbjct: 330 NRRPGPGMADKPVVDATDDSVRVHAAHGPGRQVDVLRDVVIGLLADDPTLHPADILIMCP 389

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
           D      +      FG+   +  G P           +L      L     +  L    +
Sbjct: 390 DIEAFAPLLQG--AFGLADSVPDGHPAHQLQVRLADRALRQTNPLLATLDRLLDLAGSRV 447

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                 +                      D +          A  +    +  +      
Sbjct: 448 TASDVLDFAAFAPVRHRFGFDDDELSTLADWVAAAGARWGLDAEHRRRYGLAEYGQNTWR 507

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
              +  +L V    +    L T          ++ ++      +  L  V      +   
Sbjct: 508 AALDRILLGVCMSDEPGNRLETALPLDEIGSADVDLAGRLAELIDRLATVVDTLSSRHSV 567

Query: 575 LWF-----------------------EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
             +                       E   +  +          + ++    +   ++  
Sbjct: 568 QRWCAELLAGVQSLTSVPARAAWQVAEFRAEVAAVQRHAAAAGSTGLELGLADVRALLAG 627

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            + G   +    ++ TL +   +  R +    + L GL++GV+P+   ++     + +  
Sbjct: 628 ALAGRPTR-ANFRTGTLTVCTMMPMRSVPHRVICLLGLDDGVFPRGAREDGDDLLIREPA 686

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
              +       Q   D  +A  T  L+ T S  +          +    +L   D     
Sbjct: 687 CGERDLRSQDRQLMLDAIVA-ATEKLVITYSGADERTGAQRPPAVPVGELLDALDDTATT 745

Query: 732 KKRGQ-CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
              G    L   R                           +    + L            
Sbjct: 746 ATGGAVRDLVLVRHPLQPFDARTLTAGALGRVGPFTFDPVALGGARALAGPRRPAGRLVP 805

Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
             L        D +  +   +  +     +++R++   P         +    +      
Sbjct: 806 APLPAPDRPPADVELAEVIEVLTHPAKGFLRRRLDVAVPFEQDDPPDDLPVDLDALQEWG 865

Query: 851 HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
             D I R     +        E  +  +    +
Sbjct: 866 VGDRILRDRLAGVPEQECRQAEWRRGVLPPAAL 898


>gi|282853722|ref|ZP_06263059.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes J139]
 gi|282583175|gb|EFB88555.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes J139]
 gi|314983235|gb|EFT27327.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL110PA3]
 gi|315090103|gb|EFT62079.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL110PA4]
          Length = 1078

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 85/897 (9%), Positives = 214/897 (23%), Gaps = 162/897 (18%)

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +       A   +    G +++     + P    ++         + +    D     
Sbjct: 234  ALRDPYRGPLACATLANRFGLVMVDEFQDTDPLQWEILQRA--FHGHSNLWLIGDPKQSI 291

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +      +    + + ++  H           LD+     K +    N ++  + +  
Sbjct: 292  YAFRGADIHAYQDAAQSASHVLH-----------LDVNYRTDKPIVEAVNTLFSNAQLGH 340

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                   T+  + + I        +        +  ++A    +   + +          
Sbjct: 341  GISTELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQAPAGAQLNTAASDQ-------- 392

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                       +L  +V + L    +  D     PL     + ++ +         +   
Sbjct: 393  -------FVTEDLVNQVIMMLEGGTVVQDGDGSRPLRPNDIAILVRTRRR----GAELAT 441

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              + V  P    G    + S+A   L                L   + +     +    +
Sbjct: 442  ALSQVHQPAVFSGASPVWSSQAAEDLMT--------------LLEALENTDERLRTRLCL 487

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                     +       +   +   +    +  T         +      + V  +    
Sbjct: 488  SDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAALHRPGVLVRLVSM-- 545

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                R + +L    +   +++   ++  T +        WI    +L   +  +      
Sbjct: 546  AGGERYVTDLRQVAQKAHIAACEGRLTATATAA------WIREQQQLAGDDEPRRLDSDQ 599

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------- 672
              + I+   E++ L F  ++L  +  G  PK +   P +    Q  +             
Sbjct: 600  QAVIIMTVHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLDISSQGTDRSIA 659

Query: 673  -NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGT----- 725
                  ++        +      R  +              A + L  +    G      
Sbjct: 660  IESHEEDERGENLRLLYVALTRARSAVRLWWSPCPRRHRWSAFQRLVEMDRTTGELGSGV 719

Query: 726  --------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                     +F++            + L  +          P          ++ +    
Sbjct: 720  AGTDPGTLPWFNSGPIATVIAPANQKLLTRSVSAQPRACVVPRTLTRPLDTAFARTSYSG 779

Query: 778  LINDPYAVYARRILKLDFIPHFKKD------------PDRTDRGTLFHNIITEL------ 819
            L  + +A  +  +           +            P  T  GTL H ++  +      
Sbjct: 780  LTANLHAAVSESMTNNLIDEPVDDESVDDTAPGLCGLPGGTSFGTLVHTVLEYIDTAATD 839

Query: 820  --------------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKIS 864
                          +    +    E+   ++Q++ S          +          +++
Sbjct: 840  LSSEVLSITRRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMN 899

Query: 865  HSFLEHEEKIQSSIEKIFV------------------NIPAKMAIESIGIH--LTGFADR 904
                  +    +++  +                     I A +      +   LTG  D 
Sbjct: 900  FELAMTQHGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDA 959

Query: 905  IDLLKSGFVDITDYKTGDNP-------------KKETA--QKLIDPQLSLEAAALKAGSF 949
            +     G   + DYKT   P                          Q  L +AAL     
Sbjct: 960  VLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRAIMFSSHYPLQGLLYSAALHRFLA 1019

Query: 950  SQIDCRKVA------NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNLIEI 997
            S +     A         ++R      +         ++     EL E   + L  +
Sbjct: 1020 SSLPGYDPATHLGPIGYLFVRGMADRPVPDGDMPDGVFTWHPRPELIEAISEQLGGL 1076


>gi|300814040|ref|ZP_07094328.1| hypothetical protein HMPREF9131_0081 [Peptoniphilus sp. oral taxon
            836 str. F0141]
 gi|300511849|gb|EFK39061.1| hypothetical protein HMPREF9131_0081 [Peptoniphilus sp. oral taxon
            836 str. F0141]
          Length = 521

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 84/259 (32%), Gaps = 30/259 (11%)

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
             + R++S ++    +         R+ K++      K+ D    G+++H I+    K R 
Sbjct: 262  LENRSFSATDFDSYVKSGRDFLIERVFKIEEYEDSFKEVDYLKDGSIYHKILENYFKNRK 321

Query: 825  NKNTPEINHLMKQIID---SHFEKENLPPHIDII-WRHLFHKISHSFLEHEEKI-QSSIE 879
              +   + +L+ +      S  E  +       I        I  +  + +         
Sbjct: 322  VYDEDYLKNLIMKETFPKCSKVEDLSFSEKFKFIKDFSYLLDIVRA--DTDANRINKDFM 379

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG--DNPKKETAQKLIDPQL 937
                       I    I+L G  DRID      + I DYK+                 Q 
Sbjct: 380  PKLFEKRFSFDI--GPINLVGSIDRIDAKDDEEILI-DYKSSNASTRTAADVFNNKSFQS 436

Query: 938  SLEAAALKAGSFSQIDCRKVANLFY----------IRLKQK--FKIDCITNDKKKYSADE 985
             + A A       +   +K+A  +Y          I + +K   K D     K     +E
Sbjct: 437  VIYALA------RKNKDKKIAGFYYKIIKNFKNVPIFVNEKYIDKYDKGRFYKSDNEINE 490

Query: 986  LSEKSLKNLIEIVTLLQNG 1004
            L + +   +IE+   + +G
Sbjct: 491  LLDNATNKIIELYKDMCDG 509


>gi|91790119|ref|YP_551071.1| UvrD/REP helicase [Polaromonas sp. JS666]
 gi|91699344|gb|ABE46173.1| UvrD/REP helicase [Polaromonas sp. JS666]
          Length = 716

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 67/693 (9%), Positives = 182/693 (26%), Gaps = 110/693 (15%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+R     + GK++  + +I +   +       D                 
Sbjct: 74  ITFTNKAAAEMRERAKSLIGKQAKGV-LICTFHALGVRMLRQDGQALG------------ 120

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
                L   +     D +  +  ++  S  ++ A            I   + +       
Sbjct: 121 -----LKQQFSILDSDDVTSILKDAGGSTDVATARQWQWT------ISAWKGQGLNAAQA 169

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----K 224
            A  +             +     ++ ERL    +          ++   EH       +
Sbjct: 170 AAQASNDE-------ERLVARVMAHYEERLTAYQSVDFDDLIGLPLKLLREHEAVRNKWQ 222

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
            + G +++     +      ++  +             D       W   T  +      
Sbjct: 223 QSLGHVLVDEYQDTNATQYEVLKLLVGTRGR--FTAVGDDDQSIYGWRGATLDNLKKLP- 279

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                 +P   + KL                            S      +     N  +
Sbjct: 280 ----EDYPNLKVVKL---------------------EQNYRSTSAILRAANNVIGPNPKL 314

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD-----------ENKKKSALIT 393
               + +       V +++ D+E  EA  +   ++               +  K   ++ 
Sbjct: 315 FPKTLFSELGEGEPVRVVDCDSEEHEAERVVARIQSLRAGGELQAVGSQYKEWKDFCVLY 374

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              + A+ ++    +  I   +S G           L S +  +   ++  A    V  P
Sbjct: 375 RANHQAKPLEKAFRKAQIPYKVSGGQSFFDRAEIKDLCSWMVLLVNNDNNPAFMRSVTTP 434

Query: 454 LAKFGFPEKYLSRA-KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
               G           +  +L       ++     L +  +  +       +   +++R 
Sbjct: 435 KRGIGHTTLGTLGTFADQYKLSLFEALFSNSLSSVLPAKAVGSLQEFGRYLNELEYRARR 494

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
           +   ++    L D + +                         +  +   ++       + 
Sbjct: 495 TVGAEDARTFLNDWLKEID----------------------YEKHLYDGEDSEKVAAARW 532

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
            N+    +   L         +G+ +++     ++++  +    T+  +    + + +  
Sbjct: 533 SNVMDFCDWMALRCGGQIDDTSGAVVESEKKTMLEVVQTIALLSTISEREGDQNVVTLST 592

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              S+ L +  ++L G NEG+ P    ++   +           A +   +    +    
Sbjct: 593 LHASKGLEWPHVMLAGCNEGLLPFKLEEDDGSNTDN-------IALRLQEERRLMYVGIT 645

Query: 693 GTRHLIYTRSLRENNI-----PTIASRWLQRLL 720
             +  +    LR           I SR++  + 
Sbjct: 646 RAQRTLAVNWLRRRKKNRDTIAGIPSRFIAEMA 678


>gi|169349911|ref|ZP_02866849.1| hypothetical protein CLOSPI_00650 [Clostridium spiroforme DSM 1552]
 gi|169293479|gb|EDS75612.1| hypothetical protein CLOSPI_00650 [Clostridium spiroforme DSM 1552]
          Length = 963

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 65/192 (33%), Gaps = 34/192 (17%)

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT--ELIKKRINKN 827
            S S+I+   + PY  +A+  LKL             + G++ H ++   +++ +    +
Sbjct: 615 LSSSKIETYNSCPYKYFAQYDLKLYPFKQP--TLQTNEIGSIVHYVLEKTKILFQNNQSS 672

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ------------ 875
                + ++ +ID + ++      +           ++ F+    K+             
Sbjct: 673 NDIDYNQLQNLIDKYVDEYIDDNDL----LDKLKHNANKFIIKMIKLDLVNTIIVLINQM 728

Query: 876 --SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ--- 930
             S  + +   +            L G  DRID     ++ I DYK+      +      
Sbjct: 729 KVSDFKIVGSEVKICQQYP--NFKLDGIIDRIDQY-DKYLKIIDYKS----SDKNLDISL 781

Query: 931 --KLIDPQLSLE 940
             +  + Q+ L 
Sbjct: 782 AIQGFNIQMLLY 793


>gi|190895192|ref|YP_001985485.1| putative DNA helicase [Rhizobium etli CIAT 652]
 gi|190700853|gb|ACE94935.1| putative DNA helicase protein [Rhizobium etli CIAT 652]
          Length = 1030

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 89/794 (11%), Positives = 200/794 (25%), Gaps = 85/794 (10%)

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM--RAEAEHLMKGTKGPIIIAG 234
                       +  A          L+    +     L+    E    +      +++  
Sbjct: 262  LVHELAATLSEVIDAYDLRKRDAAVLDFDDLLLQARLLVCEHTEIREWLAWRYSHLLVDE 321

Query: 235  STGSIPATARLMSTVANHPNGAI----------VLPGLDCHIPTAIWNTIT--EKSTNIT 282
               + P  A ++  +A                 +    D       +        +   +
Sbjct: 322  FQDTDPLQAEILFFIAATAPPTRWEQAQLRPGALFLVGDPKQAIYRFRGADIEAYAVAKS 381

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                + +       A      ++     +    V  +      V   + + P        
Sbjct: 382  VIAKSTNGCLLAVTANFRSRAEVLEHVNEVFQEVLAQPGQPGFVALTATMSPPPLPFPAA 441

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISI-AIALRMSLDENKK----KSALITADRN 397
              L   +P   +             +  A  I A+ +  +    ++      AL+     
Sbjct: 442  AKLTIDVPRDVRAEEQREAEAEAVAQLCARLIGALTITRADGTERRLRAGDIALLAPTHT 501

Query: 398  LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
               R +  L    I++   AG  L        L +L+  +    D +A   L++ P+   
Sbjct: 502  DLWRYERALEEHRISVASQAGNALFRRQELQDLLALVRTLADPLDTLAFGALMRGPVV-- 559

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                          L    L  I            + +L     
Sbjct: 560  -----------------------------GLSDEELLDITAALKPDADGRRRFQLRTVAG 590

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            ++   L   +L  +  L               ++   +     +        R    L  
Sbjct: 591  DVVHSLAREVLVKLQGLQRLAA---ELTPMQLLAYAIERLNLRVVMAARHGQRNARALAN 647

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
             +    L+  +   +        +     +   R  +G            + I+    ++
Sbjct: 648  LDAIVELARPY--GVAGLRAFALDLQRGWERKRRHPEGR----VDVSGDAVEIVTMHSAK 701

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-----NLKTAEKYIGQAAHDFEMAN 692
             L +  +I          +   ++ F+ R     L      ++  +    ++  +F  A 
Sbjct: 702  GLEWPVVITV----NSSTRFKPQDQFVYRQSDDTLHWIVGGIEPPDLAAARSEEEFREAR 757

Query: 693  GTRHLIYTRSLRENNI------PTIASRWLQRLLVLGGTDFFD---NLKKRGQCYLDWTR 743
                L Y    R  ++      P  +SR   R++ LG     +   ++    +       
Sbjct: 758  QRERLWYVAMTRARDLLVIPDLPGASSRSWSRVMDLGQKRLSELRTDMLPASEVPNADVL 817

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
              + T      +R +     E                D    +   I         +   
Sbjct: 818  VNEQTDAIFLAERERIDAASEPILWDRPSERDPDRSADTTDSFVVDI----TTDGQRIVG 873

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
                RG + H ++ E +   +     E+     Q++D      +  P+          + 
Sbjct: 874  AGALRGNVLHKLMEEFLNGELFDGEDEVIRRAAQLLDQLQAVVDDDPNERRPDPLEMGRT 933

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
            +   L     ++  IE++   IP   A      +L G AD   +       + D+K+  N
Sbjct: 934  ALRTLRMP-DLEPFIERLVPEIPLWAAAPPR--YLAGRADAAWIDGDRIALVIDWKSDVN 990

Query: 924  PKKETAQKLIDPQL 937
            P           QL
Sbjct: 991  PDATAQGAHAA-QL 1003


>gi|94265231|ref|ZP_01288991.1| Exodeoxyribonuclease V, RecC subunit [delta proteobacterium MLMS-1]
 gi|93454265|gb|EAT04578.1| Exodeoxyribonuclease V, RecC subunit [delta proteobacterium MLMS-1]
          Length = 1155

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 82/775 (10%), Positives = 181/775 (23%), Gaps = 51/775 (6%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81
               +  +   +      +   L +  I V ++     L     E  G  +         
Sbjct: 23  AELAVASSAGSSAGSSAGSSAPLTAECIVVQSQGMAVWLEQRLAERFGIWAN-------- 74

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            D    +     LL   L           E   L L+          +  P +       
Sbjct: 75  PDFPHPRRFHQRLLQAVLGRQAVADFSHRESFTLALLALLPKLPQRPEFAPLARYLDGAD 134

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
               + LA+ +A + D       +   L   + E+            +     W     +
Sbjct: 135 DWKCLQLAEKIAYLFDQYAVYRPEM-VLAWERGEEQAGTAGAELADNRWQPLLWRRLSRQ 193

Query: 202 LN-ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
           L    +P+    A +R       +       +   T   P    L+   A      ++L 
Sbjct: 194 LGSPVAPLTEAFASLRQGRLAAPELLPPRAFLFAITTLPPLYLNLLDQAARIIPIHLLLF 253

Query: 261 GLDCHIPTAIWN-------TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE----- 308
                    I+         +      +       + H       L     + RE     
Sbjct: 254 SPAREYWADIFTPAALREMELRHSDAALLEEGEPAALHLSGGHPLLASLGTVAREFQDIL 313

Query: 309 ----DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
               D +   +       +      + L  D + ++     E +          +A+   
Sbjct: 314 EEQSDYQPATDGERFPENQENPGLLARLQQDIAQLKEPAAGEGEESQPPTADDSLAIHIC 373

Query: 365 DNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKLEL------TRFGINIDI 415
            +   E   +   L   L   + +     ++  D      +   +       R  I   I
Sbjct: 374 HSPLREVEVLQDQLLQLLDGEEFSPHDIVVMVPDIETYAPLIEAVFNRPPGDRRRIPYRI 433

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK--------YLSRA 467
           +             L           +  A+  L+     + G               R 
Sbjct: 434 ADRRLSREGELLDTLLRFFEVARGRLEVSAVLDLLAAEPVRRGLGLDGGQLQRIEQWLRQ 493

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
                 +     ++        +     +        +P      ++      +   + +
Sbjct: 494 SRVCWGMDEEHRQHHGQPAQRLNTWRFGLDRLLLGYAMPAASDVFADILPHADIEGQESV 553

Query: 528 L--QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
                +                 +I+DW  ++   L ++  D+           +  TL+
Sbjct: 554 TAGILLRFCEELFALVKLVQTPQTIADWATISQRVLISLGGDDAASDWQELCLRD--TLA 611

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
            L S+  +           ++ ++   +DG     +      L     L  R + F  + 
Sbjct: 612 QLLSEADQAALTRPLELPAFLRLLRGRLDGAG-GTRGFLDGGLTFCNMLPLRTIPFPVVC 670

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
           L GLN   +P+      F           +   +          +    R L  +   R 
Sbjct: 671 LLGLNNDDFPRQEPAADFDLLAAAPRPGDRCRRRDDRFM-FLESLLAARRRLYISYVGRS 729

Query: 706 --NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
             +N     S  +  LL               + +                  P+
Sbjct: 730 LRDNRSLPPSVLVDELLTCLAAMSPKAAGANDEAHRQRVAARFTVEHPLQPFSPR 784


>gi|332669621|ref|YP_004452629.1| ATP-dependent DNA helicase PcrA [Cellulomonas fimi ATCC 484]
 gi|332338659|gb|AEE45242.1| ATP-dependent DNA helicase PcrA [Cellulomonas fimi ATCC 484]
          Length = 852

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 74/704 (10%), Positives = 176/704 (25%), Gaps = 112/704 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T +A  E+R    ++ G  +  +  + +           +            
Sbjct: 105 GEVLAITFTNKAAAEMRERVEQLVGPAARNM-WVSTFHSACVRILRREA--------ATL 155

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++    +         +L  ++       P   P         AK L+  I  ++ E  
Sbjct: 156 GLRSSFSIYD--AADSQRLLTLVARELDLDPKKYP---------AKALSAKISALKDELV 204

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             E   A         +  A          +  RL +  A       ++ +     H   
Sbjct: 205 DPETFAATNGGGAANDFDTALAQ---VYTRYQARLRQAQALDFDDLIMSTVHLLQAHPAV 261

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-----------IVLPGLDCHIPT 268
               +     +++     +  A   L+  +  H   A            +    D     
Sbjct: 262 AEHYRRRFRHVLVDEYQDTNHAQYVLVRELVGHSGSAAGADGEEVPRGELTVVGDADQSI 321

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             +   + ++          + +P      L       +  +     V +   GR     
Sbjct: 322 YAFRGASIRNILEFE-----ADYPDARTILLEQNYRSTQTILSAANAVISRNPGRKPK-- 374

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK- 387
                              ++       + +    AD E EEA  +A  +    D +   
Sbjct: 375 -------------------RLWTDSGQGAQIVAYVADTEHEEARFVAQEIDRLGDSDGVR 415

Query: 388 --KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
               A+       +R ++  L R G+   +  G             + L AI   +D + 
Sbjct: 416 PGDVAIFYRANAQSRALEEVLIRVGLPYKVVGGTRFYERKEIKDAVAYLRAIANPDDDVN 475

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVAL-RGNKNSYDIMDLKSLVLDRIATQKNNTH 504
           +  ++  P    G   + +  +    E ++     +   ++  L +  +  +++  +   
Sbjct: 476 LRRILNVPKRGLGDRSEAMVASFAERERISFGAALERLDEVPGLGTRAITGLSSFASMMS 535

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                +       E+   ++D                        + +  +L     +  
Sbjct: 536 DLRVLAFQGAGPAEVLGAVLDRSGYLAE-----LRASEDPQDASRVENLAELHAVATEFE 590

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
             D    L +          S          +                       P+   
Sbjct: 591 QSDPDGDLADFLERVSLVADSDQIPTPDGADADED-------------------GPRTPD 631

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
              + ++    ++ L F  + L G+ +G +P   +              L   ++   + 
Sbjct: 632 QGVVTLMTLHTAKGLEFPVVFLTGMEDGTFPHMRS--------------LTDTDQLAEER 677

Query: 685 AHDFEMANGTRH-LIYTRS----LRENNIPTIASRWLQRLLVLG 723
              +      R  L  +R+              SR+L  L    
Sbjct: 678 RLAYVGLTRARERLYISRAAVRTAWGVPNEFPPSRFLDDLPEEL 721


>gi|254776975|ref|ZP_05218491.1| exodeoxyribonuclease V, gamma subunit [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 1096

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 82/732 (11%), Positives = 184/732 (25%), Gaps = 59/732 (8%)

Query: 37  DPLNPLLLASVTIYVPTKRAIQELRSEFI-----EITGKKSTILPIIKSLGDVVEEKFTA 91
            P +P  L    + VP +   + L             G         +S G ++ E    
Sbjct: 25  PPADPFALE--LVVVPARGVERWLSQRLSHVLGRARDGDGVCAGVQFRSPGSLIAEITGT 82

Query: 92  DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
                ++ +     +        L   W   L   +   +  +   L  +       A+ 
Sbjct: 83  AEDDPWSPDALAWPLLE-AIDCSLDEPWCRTLATHLGHFHSGAEAELRRT--RRYEAARR 139

Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
           LA +      +         L  +          + L+     W   +  + A  P    
Sbjct: 140 LAGLFAGYARQR------PRLLVDWLDGDPGDLDEDLRWQPPLWRALVARVAADPPHVRH 193

Query: 212 IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
              +           +  + + G T        L+  +A H +  + LP         +W
Sbjct: 194 AETIARLRRAPSDLPQ-RLSLFGHTRLACTDVELLDALATHHDLHLWLPHP----SDRLW 248

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
             +    TN        ++H   +   L       RE  + L          +       
Sbjct: 249 RAL--AGTNGVIPRRDDTSHRAVAHPLLATLGRDLRELQRGLPADPRTDEYLAGDARPDT 306

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKK 387
           L          + +     ++      V +        +   +   L   L +      +
Sbjct: 307 LLGWLQSDIAANAIRPVGRSLAAGDRSVQIHNCHGPARQVDVLREVLLGLLADDPTLQPR 366

Query: 388 KSALITADRNLARRVK----------LELTRFGINIDISAGIPLSTT-LHSSILTSLLNA 436
              ++  D      +                        A   L  T     +   LL  
Sbjct: 367 DILVMCPDIESYAPLIMADFGLGDVVHGAHPAHQLRVRLADRSLIQTNPLLGVAAQLLAL 426

Query: 437 IFKLNDFMAIATLVKHPLAKFGF----------PEKYLSRAKNALELVALRGNKNSYDIM 486
                    +  L + P  +  F                           R   +   + 
Sbjct: 427 AGGRVRASEVLNLAQTPAVRARFGFTDDDLEAITGWVRQANIRWGLDRQHRRPYHVDFVH 486

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
           +     +DRI      +   +     +    +++   V    Q    +   +   +S  G
Sbjct: 487 NTWRFGIDRILAGVAMSDDSNAWIDATLPLDDVSSNRVQLAGQLAEFVARLQHVLDSLTG 546

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              +++W          + L    +  + W   + +   +  S    + +       +  
Sbjct: 547 ARPLTEWLT---AVADGIALLTRVRDADEWQSGQLQREFAAVSAQAGSRADTVLRLPDVR 603

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            ++TR + G   +    ++ TL +   +  R +    + L GL++G++            
Sbjct: 604 ALLTRHLSGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGLF---PRLGVVDGD 659

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRH----LIYTRSLRENNIPTIASRWLQRLLVL 722
              S   +        +       A G       + YT +   +  P   +  L  LL  
Sbjct: 660 DALSRCPMTGERDIRSEDRQLLLDAIGAATEKLVITYTGANEYSGQPRPPAVPLAELLDT 719

Query: 723 GGTDFFDNLKKR 734
                 + ++ R
Sbjct: 720 LDITTAEPVRDR 731


>gi|239815308|ref|YP_002944218.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239801885|gb|ACS18952.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 1087

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 75/799 (9%), Positives = 175/799 (21%), Gaps = 108/799 (13%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPII 231
            +        ++    + E             + A              +  +      ++
Sbjct: 343  YQQRMTRLTRLLIAAFAEVKRAHGWVDMNDVEQAAQLLLGQSALSGWVQERLDARIAHLL 402

Query: 232  IAGSTGSIPATARLMSTVANHPNGA-----IVLPGLDCHIPTAIWNTITE---------- 276
            I     + P   + +    +   GA      V    D       +               
Sbjct: 403  IDEFQDTNPLQWQALYGWLSAYTGAGGKAPRVFIVGDPKQSIYRFRRAEPQVFIAAKKFV 462

Query: 277  KSTNITSSNTTYSTHPQYS-LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            +            TH     +  L++   +  +D             R+       LPP 
Sbjct: 463  REGLGGELLNCDHTHRNARAVVGLVNQAMLAAQDAGEFDGYRAHTTERNDQGDLLKLPPI 522

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNERE-----EAISIAIALRMSLDE--NKKK 388
                 +T        +    + D  +       E     E    A  +   + +    ++
Sbjct: 523  DRGALDTTAEAAPADDGMLHWRDSLVTPRVLPEEQLLQKECEQAARWVAQRIADGTPPRQ 582

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
              ++   RN    ++  L +  I +       L        + +L++A+      +++A 
Sbjct: 583  IMVLARRRNRLSAMQDALRQRHIPVQQPEKNELHDAPEVQDVVALIDALVSPAHDLSLAR 642

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
             +K PL   G         +   +               L        A           
Sbjct: 643  GLKSPLFGIGDDALVQLALRQREQPS--------SSWFALIQKGEGLPAELVAAGARLKQ 694

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
              R            +  I      L  +     S     ++++   L    L+      
Sbjct: 695  WQRWLAALPP--HDALSAIFHDGDVLARFGAAMPSAMRQSALANLRGLLAASLEIEGARF 752

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                  +     G  + +    + +    +  +  + ++  T L+      P   ++  +
Sbjct: 753  ATPYALVRALRAG-GVRAPSVAVPDAVQLLTVHGAKGLEADTVLMLDCDAPPPRAQTMGV 811

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +    E +  +        L     P   A                             
Sbjct: 812  LV----EWKGSDSAPTRFVFLASEKTPPGCAATLLEEEQRAR--------HREELNGLYV 859

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                    L+ +               L+ +                             
Sbjct: 860  ATTRARERLVLSSVQPARANEGSWWSRLESMC---------------------------- 891

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
             +      P    P+E    ++S  ++  L        A R      +            
Sbjct: 892  -EPVEADEPLLALPVETGGGSFSMKKMPVLAPAAKESPATRKAASATVDAR-----AAAF 945

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            G   H ++                  ++                  +        + ++ 
Sbjct: 946  GQAMHRLLE-----WALPGEALPPAHVRAAAREFMLDAQQARGA-AVLAERIRAGAGAWA 999

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL-LKSGFVDITDYKTGDNPKKE 927
              E  I     ++ +    +          T   DR+     SG   I DYK+   P   
Sbjct: 1000 WDERMIDWHGNEVTLVHEGE----------TLRIDRLVRERASGAWWILDYKSAARP--- 1046

Query: 928  TAQKLIDPQLSLEAAALKA 946
                 +  Q+    AA++ 
Sbjct: 1047 ERDAELIAQMQRYRAAVQH 1065


>gi|319939427|ref|ZP_08013787.1| ATP-dependent helicase/nuclease subunit A [Streptococcus anginosus
           1_2_62CV]
 gi|319811413|gb|EFW07708.1| ATP-dependent helicase/nuclease subunit A [Streptococcus anginosus
           1_2_62CV]
          Length = 1226

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 69/538 (12%), Positives = 154/538 (28%), Gaps = 58/538 (10%)

Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
           L ++ D     E +        +E+     L+   F+K   + +  R  E NA       
Sbjct: 338 LRNLADRFYRFEFQVTY-----HEEAREILLVLQRFMKAFVESYLNRKKEENAFEFADIS 392

Query: 212 IALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
              ++   E     H  +     +++     +     R++  ++   NG       D   
Sbjct: 393 HFAIQILEEFPDVRHFYRTKYHEVMVDEYQDTNHTQERMLELLS---NGHNRFMVGDIKQ 449

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYS--------LAKLLDFLDIKREDVKRLGNVSN 318
               +     +  N      TY    Q              ++ L+   +  KRL +   
Sbjct: 450 SIYRFRQADPQIFNEK--FKTYQDDSQQGKLIVLKENFRSHVEVLEATNDVFKRLMDEEV 507

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI------QKCFSDVALIEADNEREEAI 372
                +         PD  +       E  I +       ++   DV+ I A    E A+
Sbjct: 508 GEIDYNETHYLVAGNPDKKEPNPQYQTEFLIYDGTLETNNEENDKDVSSISAG---EVAL 564

Query: 373 SIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLHSSI 429
            I   +R++ +E    +   L+TA R     +  E  ++GI +    G      ++   +
Sbjct: 565 VIKEIIRLNNEENVPFEDMTLLTASRTRNDVILSEFAKYGIPVVSDGGEDNYLQSVEVMV 624

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           +   L  I    +  A+  L+K P+  F   E              +          +L 
Sbjct: 625 MLDTLRTINNPLNDYALVALLKSPMFTFTEDELARLAL-----QKKVTEANYIIHQENLY 679

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
             + + ++    +  +         +  +  +L      +  +                 
Sbjct: 680 EKLKNALSGHGQHPELITPPLLKKIQQFQEILLDWREFAKINSLYDLLWKIYQDRFYYDY 739

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
           +               L            +       +  KI+ET + + +  +      
Sbjct: 740 VGALPNGAGRQANLYALTLRANDYEKMSFKGVSRFIGMIDKILETQNDLASVVV------ 793

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                             + ++   +S+ L F  + L  +++    K+++    LSR 
Sbjct: 794 ------------AAPKHAVRLMTVHKSKGLEFKYVFLLNMDKVFNRKDSSSALILSRQ 839



 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 19/153 (12%)

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
                    G+  H ++  +   ++         ++K+ +     +E +   ID       
Sbjct: 1063 APVTGAQIGSAVHELMQRIPLNQLP-----TIAILKETLAQVQAEETVKKKID------L 1111

Query: 861  HKISHSFLEHEEKIQ--SSIEKIFVNIPAKM----AIESIGIHLTGFADRIDLLKSGFVD 914
             KI+ SF E E         +K++   P  M            + G  D   LL    + 
Sbjct: 1112 QKIA-SFFETELGQLLLKQADKVYREAPFAMLKQDQASGQDFVVRGILDGYLLLAD-RIV 1169

Query: 915  ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            + DYKT               QL+L A AL+  
Sbjct: 1170 LFDYKTDQYTNPSELVGRYQAQLALYAEALRRS 1202


>gi|310780024|ref|YP_003968356.1| hypothetical protein Ilyop_2246 [Ilyobacter polytropus DSM 2926]
 gi|309749347|gb|ADO84008.1| hypothetical protein Ilyop_2246 [Ilyobacter polytropus DSM 2926]
          Length = 887

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/402 (14%), Positives = 125/402 (31%), Gaps = 61/402 (15%)

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            ++  L+ + + + NL ++++      + F             S++       +S +++ L
Sbjct: 521  RDFLLTEIQREENNLLSSDEKRLYEKYRFFQGLFNCKKALVFSMKNEENDLDSSPFIEEL 580

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP-----KPFPPLEAQPRTYSFSE 774
            ++        + K      L   R     +     +       K       +       +
Sbjct: 581  MLNYKLKIT-DPKYDQNDLLSMARTFFKGSSPVKKELTVNSLQKDDSDFHEKTIRLGSYD 639

Query: 775  IKQLINDPYAVYARRILKLD-FIPHFKKDPDRTDRGTLFHNIITELI----KKRINKNTP 829
               L   PY  Y ++I  ++      +        G + H I+ E+         NKN  
Sbjct: 640  YSLLTICPYKFYLQKIASIEYQTRKLESKLSPRIIGIIVHEILEEIANIKEDDVKNKNFS 699

Query: 830  EINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
                 + +++     K       +L  +   I   +F +    F ++ EKI      I  
Sbjct: 700  LAEVNIDELLRKALYKRRLQIPFHLDNYYREIMFPVFIEGIKGFYKNLEKIIGDQNIISF 759

Query: 884  --NIPAKMAI--ESIGIHLTGFADRI-DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
                  K  +  E++ + L+G  D I +  +     I DYKTG              QL 
Sbjct: 760  SGEKSKKEKLIDENLKVILSGRIDLIIESSRDN--CILDYKTGQ---------GDPRQLD 808

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
              +              +     YI      K++  ++ K   + +++  +  +      
Sbjct: 809  FYSILYY--------GEESQAKKYIFNAWDGKLEDFSSRKNTLTYNDMKNQLKE------ 854

Query: 999  TLLQNGEQPFISHLRL----SEKSNIQSEYDHLARVAEWREE 1036
                     FI++          +  + EY  + R+  W +E
Sbjct: 855  ---------FIANPIYKRTEKHSTCNRCEYQQVCRMR-WEDE 886


>gi|226304346|ref|YP_002764304.1| exodeoxyribonuclease V gamma chain [Rhodococcus erythropolis PR4]
 gi|226183461|dbj|BAH31565.1| exodeoxyribonuclease V gamma chain [Rhodococcus erythropolis PR4]
          Length = 1093

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 97/882 (10%), Positives = 233/882 (26%), Gaps = 65/882 (7%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L   L    R    +P   A  T+ VP K   + L        G          S  ++ 
Sbjct: 13  LVSALATLLRTPLSDP--FARETVAVPAKGVERWLNQRLSSQLGTSGPSAVDGIS-ANIA 69

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                  +  S      ++         RL+    + + + + + +              
Sbjct: 70  FPSPARLVAESVAAVSGITADDDPWSPTRLVWTVLDVIDESLGEPWCGVLAKHLEGHREG 129

Query: 146 IWLAKN--LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
              A    + ++      +  +   +            L  ++  +  ++ W     +++
Sbjct: 130 RRFASATHVTELFRSYAAQRPQM-LIDWAAGRLTDGHGLALSEDFEWQARLWCIVADKID 188

Query: 204 ASSPVGYQIALMRAE-AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
              P      + RA   +  +      + + G T        ++S ++ + +  I LP  
Sbjct: 189 VPGPAERLGQVSRALVEDPALVDLPERLSVFGPTRLPVDQRMILSALSANRDVHIWLPHP 248

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
              + T + + I  +S +    +   S     +L      L     DV+ L         
Sbjct: 249 SPALWTKMSSRIPPRSESTIRRSEDGS-----ALISANPLLSSLARDVRELQISLGAAEF 303

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAISIAIALRMS 381
            S+ + +   P         D++ ++ P++       V +        +   +   L   
Sbjct: 304 ESVHLPEPAGPKSLLATVKADVIADRAPSVAAEPDGTVQVHACHGPARQVEVLRECLLRL 363

Query: 382 LDE----NKKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHS-SI 429
            ++      +   ++  D      +               +     A   L  T    ++
Sbjct: 364 FEDDPTLQPRDVLVMCPDVETYAPLVRAAFGQGVHGHPGHLLRVRLADRGLRQTNPVLAV 423

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAK----FGFPEKYLSRAKNALELVALRGNKNSYDI 485
           L SLL           +  L      +    +G  E    R                   
Sbjct: 424 LGSLLELADGRATASEVLDLAAADPVRTRFSWGEDELERLREWTTEAGARWGIGSRQRAT 483

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL-------VDHILQCITPLVTYK 538
             L +   +   T  +   +            +LA+ L       +D   +    +    
Sbjct: 484 FGLDAFPQNTFNTAMDRILLGVSADESENAWLDLALPLDDVDGTDIDLTGRFAEFVDRLA 543

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
            +     G  S ++W ++ +  L  +                           +E G   
Sbjct: 544 VSLRDLAGPHSPAEWLRVLMRALDLLTDTAPADSWQS------AGAHRELVAAVEFGGET 597

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                +   +++R + G   +        L +   +  R +    ++L GL++ V+P+  
Sbjct: 598 MLRLADVRAMLSRSLAGRPTRANFRTGE-LTVCTMVPMRSVPHRVVVLIGLDDEVFPRTG 656

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA-----S 713
             +          +  +       Q   D  M+ G   ++                   S
Sbjct: 657 GVDGDDILSRHPVVGERDLRSEDRQLLLDAVMSAGEHLILLYTGADPVTGVVRPPAIPLS 716

Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
             L  L    G +  + +  R                      P      +      + +
Sbjct: 717 GLLDVLSATVGPEAINGVLTRHPLQS----------FDNRNFSPDQPFSFDTAALAGARA 766

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
                I  P       +L  + +    K+ +  D      +     +++R+    PE++ 
Sbjct: 767 AAGTPIELP------TVLSAELLEVHPKEVNLADLVNFLVHPARGFLRQRLGVRVPELDD 820

Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFH-KISHSFLEHEEKI 874
            +   + +  +  +     D +       + S  F   E + 
Sbjct: 821 DIADSLATELDPLSTWALGDRMLLSRLAGRSSADFRAAEWRR 862


>gi|320527942|ref|ZP_08029108.1| putative ATP-dependent DNA helicase PcrA [Solobacterium moorei
           F0204]
 gi|320131568|gb|EFW24132.1| putative ATP-dependent DNA helicase PcrA [Solobacterium moorei
           F0204]
          Length = 743

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/416 (11%), Positives = 110/416 (26%), Gaps = 64/416 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E++     +   +++  P + ++  +       D++           
Sbjct: 71  KILAITFTNKAANEMKERVRNMLASQTS-APWVSTIHSLCVRILREDIIAMGYP------ 123

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             R   +       ++ L +  K    ++      S  + I   K          T +  
Sbjct: 124 --RNFTIMD-TEDQKSVLKEAYKLQGIDATTYSYSSMLDYIANNK----------TADIT 170

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA------ 219
            E    L  + +                ++ +R  +L A       +  +R  A      
Sbjct: 171 PERALVLAGDYHAD------KVKAEVYTFYDKRQRDLYALDFDDLILWTVRMFAKFPEIL 224

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
           E   +     I++            L++ +    N  +V+   D       W        
Sbjct: 225 EKWQRH-FNYILVDEFQDIDKKQYELINQITGPMNNLLVV--GDPDQTIYTWRGADVNII 281

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      +PQ     L +                         +       ++   
Sbjct: 282 MNF-----AKDYPQAKTIILNENY---------------------RSVEAILNGANSVIK 315

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397
            N   ++ ++   +     +    A ++  +A  IA  +     E  +    A++     
Sbjct: 316 NNKYRVDKELFTNRHSDEKITHYSAASDEYQAAWIASKISSLHREGKSYHDIAILYRSNY 375

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
           L+R ++  L    I   I  G               L  +    D +A+  ++  P
Sbjct: 376 LSRSLEKALLDERIPYIIYGGTRFYERQEVKDALCYLRMVTT-ADDLALQRILNRP 430


>gi|288959583|ref|YP_003449924.1| uvrD/REP helicase [Azospirillum sp. B510]
 gi|288911891|dbj|BAI73380.1| uvrD/REP helicase [Azospirillum sp. B510]
          Length = 1054

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 96/889 (10%), Positives = 217/889 (24%), Gaps = 48/889 (5%)

Query: 72   STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            + + P  +S   +      A       +        +    A  +L     L D  + L 
Sbjct: 177  ALLPPAAESGEPLDRALADAVSAAVAAIGAAGDTGVKKTADALAVLKDAAALLDDGRPLP 236

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                + L    A   W A+   D +        +   L A         +  AA+ ++  
Sbjct: 237  WAEWVRLGKIDAGKRWTAQ--VDPVREAAGAHLRHPRLRADLRALVDGVFRCAAEAMEAY 294

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             ++  +R +             + R E    +       ++     + P    L   +A 
Sbjct: 295  GRFKRDRGLVDFVDQECEALALMERPELRARLAERIELALVDEFQDTSPIQLALFLRLAR 354

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH--------PQYSLAKLLDFL 303
                ++     D       +        +   +    +T            S   L+ F 
Sbjct: 355  VVRRSV--WVGDAKQAIYGFRGTDPALIDAVVATVPRATAGVTERLPTSWRSRPGLVAFH 412

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
            +           ++ +         K            T   +N    +      VA + 
Sbjct: 413  NDLFGTAFPPLGIARDDATVGGCARKDGADQPPPLALWTLGGKNWDQALAALARGVATVL 472

Query: 364  ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
            A  E            ++     +  A++         +   L   G+ + +     L +
Sbjct: 473  AVPEAWPVGVRGDRDGLTRPIRGEDIAILCRKNERCATMARALAAAGLKVAV-GRQGLVS 531

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
            T  + +  + L  +    D +A+  L           +     +     L      +   
Sbjct: 532  TPEAGLALAALRYLVDPADTLAMVEL------AHADGDGGGQSSWLEEWLRPDAARRARE 585

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
            +   L++L   R    +         + ++    E      D     +  L   +     
Sbjct: 586  ESEALRALDAARGRLLRLTPVEALEIAMMAGGVVERVKRWGDA-AGRLANLDALRGLARD 644

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                   S         +  +   +         +     + +           ++   +
Sbjct: 645  YEEECRASRGAATAGGLIGFLSDVDKGGDQPPATDAAAVRVMTYHQ-----AKGLEWPLV 699

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK-NP 662
              +D+                +  +     L  R L +         +G      A  +P
Sbjct: 700  IALDLQEGPDPSPFGLSVEGPADGVDPWNPLTGRWLRWWPWPYEKQRKGTGLDGPADASP 759

Query: 663  FLSRVMQSDLNLKTAEKYIGQA-AHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRL 719
             ++     +        Y+G   A D+ +    RH           +  P +        
Sbjct: 760  EMAAARAREQAEAVRLLYVGLTRARDYLVLAQARHGAAWLAAPRDADGEPVVRLPAAGDE 819

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
              L        ++       + T        +       P  P+E  P     S  +   
Sbjct: 820  PELRVAAATHPVRLAAFEPPEETELRSSADPEASVFTLPPAAPVEHPPLRIVPSRWRPAA 879

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
              P  V      +L          D T  G   H  +     +        +   +    
Sbjct: 880  GAPSPVLLGET-RLGERLPTPGGADITRLGEAMHGFLAVDRPEIPTARRLALAAGLLARW 938

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
            +     + L    D +WR                 +         +P +  +      ++
Sbjct: 939  ELPGMADALVEAGDRLWR-------------LLAARWPGAGWRCEVPVQGRLGLQ--RVS 983

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI--DPQLSLEAAALKA 946
            G  D + +       I D+K    P +   ++ +   PQL+L A  +  
Sbjct: 984  GRIDLL-VDAGAGWVILDHKAFPGPHERWGERALEHAPQLALYARLVAE 1031


>gi|153002977|ref|YP_001377302.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152026550|gb|ABS24318.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 779

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 79/756 (10%), Positives = 176/756 (23%), Gaps = 88/756 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T +A  E++     + G +++ L  +++           +   +         
Sbjct: 57  HVLAVTFTNKAAGEMKDRLEALLGTQASEL-WVQTFHAFGARFLRREAARAGLPP----- 110

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                        +     D    +       L +     +   + L+  ID  +    +
Sbjct: 111 ------------SFAIYDDDDQIRVVKRIFQELRVEDGEPLTARQALSR-IDRWKNAALR 157

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE----- 220
             ++           + +     +     +   L    A       +  +R   E     
Sbjct: 158 PAEV-------VVGEYDVEGQLAREVYGRFEAALARAGAVDFGDLLLRPVRLLEEDATVR 210

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
               G    +++     +  A  RL+  +AN      V+   D       W      +  
Sbjct: 211 RAWAGRFRYLLVDEFQDTNAAQYRLLKLLANEKRNVCVV--GDDDQAIYRWRGADVTNIL 268

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                      P   + KL       R  +     V ++   R      +      +   
Sbjct: 269 EFDQGF-----PGARVVKLEQNYRSTRTVLDAAHAVISKARRRREKRLWTESGAGETLAL 323

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLAR 400
                E+                            +A   +     ++ A++      +R
Sbjct: 324 VVGQDEHDEAERVARA-------------------VAAERARGTAGEEIAVLYRTNAQSR 364

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            ++  L    I   I  G             + L         + +  ++  P    G  
Sbjct: 365 PLEAALRAARIPYVIVRGTSFYDRAEVRDAAAYLRLALSPRSDLDLERVLNRPARGVGEK 424

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                RA  +   +                 + D IA +     +     R   E   L 
Sbjct: 425 TLERLRAHASARGI----------------ALFDAIAERDAVEDLKPAARRALGEFHALV 468

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
             L   +      +   +  K S       ++ T   V   +N+                
Sbjct: 469 AGLAADVPALDAGIAVQEALKRSGLLARLEAEHTDEAVERAENLA----------ELVAA 518

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
            +                +         + ++        +  +   + ++    ++ L 
Sbjct: 519 AREFDESLLGEPPPRDPEEVRPPPLARFLEQIALLGEADAETPEG-RVSLMTLHAAKGLE 577

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIY 699
           F+ + L GL +G  P     +       ++  + +    Y+G       +     R  I 
Sbjct: 578 FEAVFLAGLEDGTLPYERPWSDAGPAEREAAEDEERRLCYVGMTRAKKRLTLSLARRRIG 637

Query: 700 TRSLRENNIPTIASRWLQRLLVL---GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
                 +      SR+L  L                 RG         L         + 
Sbjct: 638 YGEGGPSYRSMEPSRFLADLPPELFGLAPRLASAPAARGPVIRRPPGSLPGEPHIELEED 697

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
               PP   +P       +     D     A  I +
Sbjct: 698 GPREPPPPRRPAAARAGPVVDYDFDQRPRAAGTIAR 733


>gi|310819921|ref|YP_003952279.1| hypothetical protein STAUR_2648 [Stigmatella aurantiaca DW4/3-1]
 gi|309392993|gb|ADO70452.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 391

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 83/263 (31%), Gaps = 31/263 (11%)

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
              +    S+S + +    P +     + K    P           G   H ++  L+++ 
Sbjct: 3    ALRNEHLSYSRLSRFEACPLSYRLHYLDKHTAEPGV-----PLSFGKALHAVLERLLQEV 57

Query: 824  INK--NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
            I+             Q+    +    L     +        I   F+  ++    S + +
Sbjct: 58   IDTEYAGALSEERALQLYREAWAASGLSG---LDLFQQGLGILQDFVR-QQGRVDSRDIL 113

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLE 940
             V    ++ +      + GF DR+D +    + + DYK+      +E        QLSL 
Sbjct: 114  AVEKEFRLPV--GPFTVLGFIDRVDWVDEETIAVIDYKSNHQLFTREELDS--SLQLSLY 169

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
            A A +          K   L    L+   + +           +E  + +L  +  +   
Sbjct: 170  ALAARR----MWPWAKKVRLSMWMLRHGVRQETTRT-------EEQLDAALAYVETLGQQ 218

Query: 1001 LQNGEQPFISHLRLSEKSNIQSE 1023
            ++  E  F + L  +    +  +
Sbjct: 219  MEKAE-SFPARLNPN---CVYCD 237


>gi|297565832|ref|YP_003684804.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
 gi|296850281|gb|ADH63296.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
          Length = 900

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 104/942 (11%), Positives = 239/942 (25%), Gaps = 118/942 (12%)

Query: 30  LVENFRYDPLNPLLLASVTIYVPTKRAIQELR----SEFIEITGKKSTILPIIKSLGDVV 85
           LV  +     + + L  +     T++A  ELR        ++      +  +   +    
Sbjct: 16  LVLRYLALLASGIPLRRIAGVTFTRKAADELRVRVGEALEDVLSTGCHLDFVCDPVSRPR 75

Query: 86  EEKFTADLLLSYNLNP---PVSNIQRLLELARLILIW-RNKLPDIIKDLYPESPLSLPIS 141
            E+   +L  +         +  ++R   L  L   +      +       E    L +S
Sbjct: 76  FEEARRELSGATLTTIHGFMIECLRRTAPLLSLDPDFSLIGDWEARAFFEEEWRSLLYLS 135

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
              A  L       +            L        G    +     +     ++ RL  
Sbjct: 136 SDPAHPLFGQAKPEMGDALLHLFAKRSLALSYTPSPGEENAVLVKVYQAVFANYSRRLGS 195

Query: 202 LNASSPVGYQIAL---MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
              S     + AL       A   +      +++       P        + +   G  +
Sbjct: 196 SLLSPSEVERRALELTANPLALGRLLDRYRAVLVDEFQDVNPVQGEFFRALESA--GLPI 253

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               D       +     +      +           L  L       R  V+ L  ++ 
Sbjct: 254 EAVGDPKQSIYAFRDADVEVFRRALAEGEV-------LPPLATTYRHSRILVRFLNRLTE 306

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
           ++    +       PP          LE      +    ++          EA  +A  L
Sbjct: 307 KLAALGLGFGPEEAPPVEGVREVQGRLEVHWVEGEVTLDELRTF-------EAQILAERL 359

Query: 379 RMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
           R   +  +  + A++   RN    ++    R G+   +  G      L    L   L   
Sbjct: 360 RALSERVDPSEMAVLVRSRNSFAFLEEAFGRLGLPYVLLQGRGYYERLEVRDLYHALRVA 419

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                 +++A  ++ P    G  E                                    
Sbjct: 420 LDP-RGLSLAAWLRSPFGGLGLSEV----------------------------------- 443

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
            Q   +  P    +    +    + L+   +    PL   K    +              
Sbjct: 444 EQILRSDDPLALLQAEFPEVYARLRLIQQTVSQSKPLEALKFLVRAPIIGG--------- 494

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              L ++       +  L F+   +                 +     ++ +  L     
Sbjct: 495 RAYLDHLQARSRENVDALLFQVAAR---------------PPSGLEVLLERLQLLSHQAE 539

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                +    + +L    ++ L +  + +  L       +            +       
Sbjct: 540 AGDVPQSGEGVQLLTVHAAKGLEWPVVAVFDLGRRNPHLS-QPAYLGPDGTVALPETPFF 598

Query: 678 EKYIGQA---------AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
           ++   QA            +  A+  + ++      +   P   +  L ++       FF
Sbjct: 599 DELRAQAKAREEAESYRLLYVAASRAKDVLLLTGSVKAGNPEGWAEVLAKVGFGPEARFF 658

Query: 729 DNLKKRGQCY----LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
           D      + +    L  +               +        P  +S S +K+  +    
Sbjct: 659 DRSDYVQRSWNYRPLPPSGPPAPRPAPVAPPWLERVFEPLPLPPLFSPSALKRQAD---- 714

Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
              R   +   +P  ++  +   R      ++   I +  + + P     ++   +  F 
Sbjct: 715 --LRGEHEPLPLPDLEEGEEVPGRSRALGTVVHTAIAQGWDPDYPAHLATLEAQ-EVMFP 771

Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
            +       +       ++  + L  E       +  +  +P  +A+        G  DR
Sbjct: 772 FDPAERESILAEARELLRVYQALLGKELPWPRDED--YPELP--LALPGGSTVWQGVMDR 827

Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
           +  +      + DYKT      E   +    QL+L   A++ 
Sbjct: 828 LYRVGE-EWYLEDYKT----DHEVLPERYYFQLALYRQAVRE 864


>gi|308067346|ref|YP_003868951.1| superfamily I DNA/RNA helicase [Paenibacillus polymyxa E681]
 gi|305856625|gb|ADM68413.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
          Length = 808

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 66/702 (9%), Positives = 169/702 (24%), Gaps = 113/702 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKST--ILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
           +S+ +   T +A  E++     + G +         ++             +        
Sbjct: 100 SSILLVTFTSKAAAEMKLRIAGLPGVRPAAARAVQARTFHSFALAMLRHRGVQD------ 153

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                                 +          +   +  + A    ++L   +   + E
Sbjct: 154 ------------------EVFGETQAQHTVMKMMLRQLGLSEAFQP-ESLLSALSAWKAE 194

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR-AEAEH 221
            +  ++L     E+        A    +A + W +   +++    +    AL+R  +   
Sbjct: 195 GRSADELPESVREESD------AKRAMLAYEAWKQERNKMDFDDILLRASALLRDPDVLQ 248

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
            ++     I++     +      ++  +A      +V+   D       +N   ++S   
Sbjct: 249 PLQRRFSHIMVDEFQDTNALQYEMVQRLAARHRNLMVV--GDDDQTIYTFNGARQESILE 306

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                  +          +  LDI      R+  + + +  +++      L     +   
Sbjct: 307 FDKVYKDAK---------VITLDINYRSDARILGLGSNIVAKNVHRRSKRLSAAGREGLP 357

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKKKSALITADRNL 398
                   P                  EEA  I   L           +  A++    + 
Sbjct: 358 PQFATPSGP-----------------EEEAGHIVTHLLGQVEEGRLRYRDIAILHRTASG 400

Query: 399 ARRVKLELTRFGINI-DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
           +R +  +L    +      AG           L   L          +I + +  PL   
Sbjct: 401 SRSIFEQLIMRDVPFIQYGAGAVFYDQSLIRPLMDHLRLSLNPRRMESIPSTL-GPL--- 456

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                                          +   + +  +   
Sbjct: 457 ------------------------------------YVSREAGMEWIMREEKQQAKKYPL 480

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                           +        S           ++                   + 
Sbjct: 481 IHLSRWDRLRDFQREQVKERIRLIRSLTTMKPAYAIQEMRRVFYDKYLESGDTGAWTHYK 540

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           E   ++L  L  +            + + D ++          + E S  + ++    ++
Sbjct: 541 ETMQESLEEL--ETAAKRFDTVEAFVSFADELSERHRQMESLRREEDSDAVRLMTIHRAK 598

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG----QAAHDFEMANG 693
            L F  +   G +EG+ P ++A +  L    ++     TA         +    +     
Sbjct: 599 GLEFPCVYWIGASEGILPHSSALHSELPEDRRAGAAPTTAVDNDAALEEERRLAYVAVTR 658

Query: 694 TRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            +  L  T     +  P   SR+L     +         ++ 
Sbjct: 659 AKELLYITSPASNHGKPAAVSRFLLEAYGVTPETSKPETRRS 700


>gi|302407938|ref|XP_003001804.1| ATP-dependent DNA helicase srs2 [Verticillium albo-atrum VaMs.102]
 gi|261359525|gb|EEY21953.1| ATP-dependent DNA helicase srs2 [Verticillium albo-atrum VaMs.102]
          Length = 999

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/490 (11%), Positives = 137/490 (27%), Gaps = 43/490 (8%)

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATARLM 246
            +   + + + L   N           +    +H    +    ++I     +      LM
Sbjct: 179 FETCFRAYQDHLERSNLLDYDDLLTKCVELLRKHPSCVSNVQAVLIDEYQDTNGIQYELM 238

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              A   +   ++   D       W +   K+      +   +                 
Sbjct: 239 RLFAQARDRITIV--GDPDQSIYGWRSAEIKNLYRLLKDFPQTD---------------- 280

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                       E Y  S  I    L     D +    L   + N         L  A N
Sbjct: 281 -------EISLEENYRSSQAILDVSLKVIQQDKKRYQKLLLPVHNKGTRPVLRRLKTAAN 333

Query: 367 EREEAISIAIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
              EA  +   +R ++  +         A++     L+R ++  L + GI   +  G   
Sbjct: 334 ---EAEWLVSEIRRAILMSGKMMNEDDVAILLRSAALSRHIESALGKCGIPYRMVGGKKF 390

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS--RAKNALELVALRGN 479
              +   IL   L  I +  +  ++A ++  P    G          A+ A   V     
Sbjct: 391 YERIEVKILIDYLRVIHQPENNDSLARIINVPRRGIGDVTIKSLVEEAETAKMDVWTLLT 450

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
           K+       ++ +   +  + +   +    S   + ++  +     H++  I  L++   
Sbjct: 451 KHCRGDRKAQTNIKKAMEQKISGELIRMVMSVRKKVEEPPSGSPCYHLVDLIGDLLSQLN 510

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
            +          +         + + L            E+ K  +    + +E    + 
Sbjct: 511 FQKYLQDMYP-EEHEARWANVEEFINLAGDFMRELSATVEDDKLPTIDGVQQVEEKDAL- 568

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                   +    +  ++ K + E    + I     ++ L +  + +  +  G  P   A
Sbjct: 569 -----GRFLANVALASDSQKGETENKPMVTISTIHAAKGLEWPVVFVPAVYNGSIPHARA 623

Query: 660 KNPFLSRVMQ 669
           ++    R + 
Sbjct: 624 EDLDEERRLL 633


>gi|310640070|ref|YP_003944828.1| ATP-dependent DNA helicase, uvrd/rep family protein [Paenibacillus
           polymyxa SC2]
 gi|309245020|gb|ADO54587.1| ATP-dependent DNA helicase, UvrD/REP family protein [Paenibacillus
           polymyxa SC2]
          Length = 811

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 66/702 (9%), Positives = 167/702 (23%), Gaps = 113/702 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKST--ILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
           +S+ +   T +A  E++     + G +         ++             +        
Sbjct: 100 SSILLVTFTSKAAAEMKLRIAGLPGVRPAAARAVQARTFHSFALAMLRHRGVQD------ 153

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                                 +          +   +  + A    ++L   +   + E
Sbjct: 154 ------------------EVFGETQAQHTVMKMMLRQLGLSEAFQP-ESLLSALSAWKAE 194

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR-AEAEH 221
            +  ++L     E            L  A + W +   +++    +     L+R  +   
Sbjct: 195 GRSADEL----PETIREEADAKRAML--AYEAWKQERSKMDFDDILLRASVLLRDPDVLQ 248

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
            ++     I++     +      ++  +A      +V+   D       +N   ++S   
Sbjct: 249 PLQRRFSYIMVDEFQDTNALQYEMVQRLAAKHRNLMVV--GDDDQTIYTFNGARQESILE 306

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                  +          +  LDI      R+  + + +  +++      L     +   
Sbjct: 307 FDKVYKDAK---------VITLDINYRSDARILGLGSNIVAKNVHRRSKRLAAAGREGLP 357

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKKKSALITADRNL 398
                   P                  EEA  I   L           +  A++    + 
Sbjct: 358 PQFATPSGP-----------------EEEAGHIVTHLLGQVEEGRLRYRDIAILHRTASG 400

Query: 399 ARRVKLELTRFGINI-DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
           +R +  +L    +      AG           L   L          +I + +  PL   
Sbjct: 401 SRSIFEQLIMRDVPFIQYGAGAVFYDQSLIRPLMDHLRLSLNPRRMESIPSTL-GPL--- 456

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                                          +   + +  +   
Sbjct: 457 ------------------------------------YVSREAGMEWIMREEKQQAKKYPL 480

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                           +        S           ++                   + 
Sbjct: 481 IHLSRWDRLRDFQREQVKERIRLIRSLTTMKPAYAIQEMRRVFYDKYLESGDTGAWTHYK 540

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           E   ++L  L  +            + + D ++          + E S  + ++    ++
Sbjct: 541 ETMQESLEEL--ETAAKRFDTVEAFVNFADELSERHRQMESLRREEDSDAVRLMTIHRAK 598

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG----QAAHDFEMANG 693
            L F  +   G +EG+ P ++A +  L    ++     TA         +    +     
Sbjct: 599 GLEFPCVYWIGASEGILPHSSALHSELPEDRRAGAAPATAVDNDAALEEERRLAYVAVTR 658

Query: 694 TRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            +  L  T     +  P   SR+L     +   +      +R
Sbjct: 659 AKELLYITSPASNHGKPAAVSRFLLEAYGVTPPETSKPDTRR 700


>gi|315506179|ref|YP_004085066.1| hypothetical protein ML5_5448 [Micromonospora sp. L5]
 gi|315412798|gb|ADU10915.1| hypothetical protein ML5_5448 [Micromonospora sp. L5]
          Length = 300

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 14/195 (7%)

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
             P       + S S        P     R I +L   P  ++      RGTL H ++  
Sbjct: 10  AAPAPVTVRASLSPSRAADFKTCPLLYRFRSIDRLPERPTVEQA-----RGTLVHAVLER 64

Query: 819 LIKKRINKNTPEINHLM-----KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HE 871
           L        TPE    +      +++    E   L    D +    F + + + L+    
Sbjct: 65  LFDLPAAARTPESAGDLVAPQWDRLVTEEPELATLFADGDAVGPQEFLRSATALLDGYFA 124

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
            +    +E           ++   + + G+ DR+D+   G + + DYKTG  P++    +
Sbjct: 125 VEDPRRLEPAEREALISAVVDD-ELLIRGYLDRLDVAPDGALRVVDYKTGGAPREAFEAR 183

Query: 932 LIDPQLSLEAAALKA 946
            +  QL   A  L  
Sbjct: 184 AL-FQLKFYALVLWR 197


>gi|317125689|ref|YP_004099801.1| hypothetical protein Intca_2568 [Intrasporangium calvum DSM 43043]
 gi|315589777|gb|ADU49074.1| hypothetical protein Intca_2568 [Intrasporangium calvum DSM 43043]
          Length = 308

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 66/200 (33%), Gaps = 11/200 (5%)

Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
            TT +        F  +       S S +   ++ P     + +      P  +     T
Sbjct: 11  ATTPEVSSAHQAAFAGMPTPLYAASPSRLLAWLDCPRRYRMQYL--DRPRPPARPQRAHT 68

Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
             G   HN++ +       + TP+    + +      +     P     WR    +    
Sbjct: 69  SVGITTHNVLRDFWDLPPGRRTPDGVAELVRSSW--IDVGFRDPEQSATWRGRVRETV-- 124

Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
            + +        + + +     +A+ +  I +TG  DR+D  + G + + DYKTG     
Sbjct: 125 -VAYLRGSNRDQQPVGIERS--VALRTASIAVTGRVDRLD-DREGELVVVDYKTGRQVPT 180

Query: 927 ETAQKLIDPQLSLEAAALKA 946
           E   +   P L+L A     
Sbjct: 181 EDDARTSLP-LALYAVGAAR 199


>gi|78224414|ref|YP_386161.1| UvrD/REP helicase [Geobacter metallireducens GS-15]
 gi|78195669|gb|ABB33436.1| UvrD/REP helicase [Geobacter metallireducens GS-15]
          Length = 1075

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 72/738 (9%), Positives = 156/738 (21%), Gaps = 173/738 (23%)

Query: 29   TLVENFRYDPLNPLLLAS-VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TLV         P  +   V     T RA +E+R   +   G     +  + +      +
Sbjct: 489  TLVARIAALLARPETVPEHVCAITFTNRAAREVRERLVATAGGAGERV-FVGTFHRFCLD 547

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                +          V    R   L RL      K    + D   +      +  A+   
Sbjct: 548  WLRQEEPGL----AVVGEESRERLLKRLFPDLGKKEQGAVADGIADHLHRSGLDGAS--- 600

Query: 148  LAKNLADIIDIIETEE-KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              ++L   ++ +        + +  L                                  
Sbjct: 601  --ESLRRYLEELAGRGAVDLDAVVPLVV-------------------------------- 626

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                +           + G+   + +            L+  +A     A V    D   
Sbjct: 627  ----RRLAEDDCFRQRVCGSVEHLFVDEFQDLNAPQYALVEILARE---ATVFAIGDPDQ 679

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +           +    ++ HP      L          V+    V      RS +
Sbjct: 680  AIYGFRGSDP------TFFFRFADHPGTRRLSLSRNYRSVSPVVEGASAVIARNTLRSGL 733

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM------ 380
               +  P                         + L  A     EA  I   +        
Sbjct: 734  ALVAGAPHQGM---------------------IELHRAPTPAAEAEFIVRRIEEFMGGVS 772

Query: 381  ------------SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
                            +  + A++      A  +   L R GI   +   +P        
Sbjct: 773  NFSRISGRGGDQGRGRSFGEMAVLYRLSRQAEELAGALERRGIPFQLIGSVPYFLGPAVR 832

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
             +T  + A    +D      L+                                  +  +
Sbjct: 833  AVTRFIQAAAGSDDIGEWLALLG--------------------------------GLRGI 860

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                L R+      T      +  +      A  + +                       
Sbjct: 861  GEESLTRLEEALPLTGDFLPLTAAAGLPSVAARQVAE----------------------- 897

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             ++         +    +         + E +         +++        N   +   
Sbjct: 898  -LAAALGRFRDVMSREGIAPAIGPVFPFLEVDAGHPDVC--RLVALAGSFGRNLAAFARH 954

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            +             E++  + ++    ++ L F  + L G  EG+ P             
Sbjct: 955  LRDYASETLY---DERAEGVPLMTIHAAKGLEFPVVFLAGCEEGLLPCT----------- 1000

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
                 L        +    +      +  +   + RE+       R L R +        
Sbjct: 1001 -----LWRDADLEEERRLFYVGMTRAKEALILTASREHPWCGPGERPLSRFVEEIPARLV 1055

Query: 729  DNLKKRGQCYLDWTRKLD 746
                +          +L+
Sbjct: 1056 SRAVQDTVRTGKKGEQLE 1073


>gi|237733546|ref|ZP_04564027.1| predicted protein [Mollicutes bacterium D7]
 gi|229383379|gb|EEO33470.1| predicted protein [Coprobacillus sp. D7]
          Length = 372

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 68/194 (35%), Gaps = 26/194 (13%)

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                  S S+++     PY  + +  LKL          +  + GT+ H ++ +     
Sbjct: 18  PLFSNHLSASKLETYNGCPYKYFNQYGLKLYPFKQPLFQIN--EIGTIIHYVLEKTQALF 75

Query: 824 INKNT------PEINHLMKQIIDSHFEKENLPPHI-----DIIWRHLFHKISHSFLEHEE 872
            +  T       ++  ++ Q ++ +  +  L   +     + I + + H + ++ +    
Sbjct: 76  TDNITASKAEVDDLETVINQHVEQYLNEHGLTERLNYGTNNYIIKTVKHDLVNTVIVLIN 135

Query: 873 K-IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ- 930
           +   S    +   +   +         +G  DR+D   + ++ I DYK+      +    
Sbjct: 136 QMKASDFYIVGSEV--DIYRNYPDFKFSGIVDRVDQY-NQYLKIIDYKS----SNKDLDL 188

Query: 931 ----KLIDPQLSLE 940
               +  + Q+ L 
Sbjct: 189 SLAIQGFNIQMLLY 202


>gi|167754672|ref|ZP_02426799.1| hypothetical protein CLORAM_00175 [Clostridium ramosum DSM 1402]
 gi|167705504|gb|EDS20083.1| hypothetical protein CLORAM_00175 [Clostridium ramosum DSM 1402]
          Length = 964

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 68/194 (35%), Gaps = 26/194 (13%)

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                  S S+++     PY  + +  LKL          +  + GT+ H ++ +     
Sbjct: 610 PLFSNHLSASKLETYNGCPYKYFNQYGLKLYPFKQPLFQIN--EIGTIIHYVLEKTQALF 667

Query: 824 INKNT------PEINHLMKQIIDSHFEKENLPPHI-----DIIWRHLFHKISHSFLEHEE 872
            +  T       ++  ++ Q ++ +  +  L   +     + I + + H + ++ +    
Sbjct: 668 TDNITASKAEVDDLETVINQHVEQYLNEHGLTERLNYGTNNYIIKTVKHDLVNTVIVLIN 727

Query: 873 K-IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ- 930
           +   S    +   +   +         +G  DR+D   + ++ I DYK+      +    
Sbjct: 728 QMKASDFYIVGSEV--DIYRNYPDFKFSGIVDRVDQY-NQYLKIIDYKS----SNKDLDL 780

Query: 931 ----KLIDPQLSLE 940
               +  + Q+ L 
Sbjct: 781 SLAIQGFNIQMLLY 794


>gi|325068693|ref|ZP_08127366.1| RecB family exonuclease [Actinomyces oris K20]
          Length = 255

 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 66/202 (32%), Gaps = 16/202 (7%)

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL-------PPH 851
            +     T +GT+ H ++  L     ++  P+    +     +   ++N           
Sbjct: 10  PEPGSLATHKGTVVHGVLERLYDLPASERLPQAALELLPGQWASHREKNPEVMDLFEDAD 69

Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
               W      +  ++   E   +  +E     +  +      G+ L GF DR+D+   G
Sbjct: 70  QVETWLEEARGLIRTYFTLENPQR--LEPAERELFVQTETGD-GLLLRGFVDRLDVAPDG 126

Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
            + + DYKTG +P     ++ +  Q+   A  L       +  R  A L  + LK    +
Sbjct: 127 AMRVVDYKTGRSPGTRFMEEAL-FQMRFYALVLWR-----LRGRAPARLQLVYLKDGRVL 180

Query: 972 DCITNDKKKYSADELSEKSLKN 993
                  +    +         
Sbjct: 181 THDPRLAELERTETRLAHLWDE 202


>gi|258508010|ref|YP_003170761.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG]
 gi|257147937|emb|CAR86910.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG]
 gi|259649338|dbj|BAI41500.1| DNA helicase [Lactobacillus rhamnosus GG]
          Length = 750

 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 78/624 (12%), Positives = 167/624 (26%), Gaps = 97/624 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVS 104
           ++     T +A +E+R    ++   +      + +   +       D+  L YN    ++
Sbjct: 56  NILAITFTNKAAREMRERVGKLVDPEIARDIWVSTFHALCVRILRRDIDKLGYNRAFMIA 115

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +    L L + IL           D   +     P S   AI  AK           E  
Sbjct: 116 DPAEQLTLVKHILA----------DFNLDPKRYDPKSILGAISGAK----------NELI 155

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
             +       +    +    A         + +RL    A       +  +    +    
Sbjct: 156 DPQTYS--DEQANSPFTKTVAQ----VYAEYQKRLRSDQALDFDDLIMQTIVLFEKDPET 209

Query: 225 G-----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     I +     +  A  RL+  +A   +   V+   D       W     ++ 
Sbjct: 210 LGFYQRKFRYIHVDEYQDTNEAQYRLVHMLAEGYHNLCVV--GDADQSIYGWRGANMQNI 267

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      +P+  +  L       +  +    +V      R                
Sbjct: 268 LDFKK-----DYPKAQVILLEQNYRSTKTILSAANDVIKNNLNRQAK------------- 309

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADR 396
                    +         +    A +E +EAI +   +   + E+ +     A++    
Sbjct: 310 --------TLWTENATGDKITYYRAQSETDEAIFVIRRIEAEMAEHHRKYGDFAILYRTN 361

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +R ++    +  I   +  G             +    +    D M+   +V  P   
Sbjct: 362 AQSRAIEEAFVKSNIPYKMVGGHKFYDRKEIRDALAYFRLVVNPADDMSFNRIVNEPKRG 421

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            G        A                             A Q + + +    +      
Sbjct: 422 IGNTSVAKLEA----------------------------FANQHDWSLLEAAANAELSPI 453

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
              A   +    + I  L   + + N T    +I D +    T      L+   ++ NL 
Sbjct: 454 SGKARGNLAKFGKMIQRLGQRRKDLNVTEMMQAILDDSGYLGTLRAANTLEAETRVENLE 513

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                  L S+             ++  ++D +  L          E +  + ++    +
Sbjct: 514 ------ELLSVTQGFDARYQPENEDSDIFVDFLAELALLSDQDEVEEDAQEVTLMTLHAA 567

Query: 637 RLLNFDTLILGGLNEGVWPKNTAK 660
           + L F  + L G+ EG++P + A 
Sbjct: 568 KGLEFPVVFLVGMEEGLFPLSRAA 591


>gi|118465804|ref|YP_883673.1| exodeoxyribonuclease V, gamma subunit [Mycobacterium avium 104]
 gi|118167091|gb|ABK67988.1| exodeoxyribonuclease V, gamma subunit [Mycobacterium avium 104]
          Length = 1096

 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 82/732 (11%), Positives = 184/732 (25%), Gaps = 59/732 (8%)

Query: 37  DPLNPLLLASVTIYVPTKRAIQELRSEFI-----EITGKKSTILPIIKSLGDVVEEKFTA 91
            P +P  L    + VP +   + L             G         +S G ++ E    
Sbjct: 25  PPADPFALE--LVVVPARGVERWLSQRLSHVLGRARDGDGVCAGVQFRSPGSLIAEITGT 82

Query: 92  DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
                ++ +     +        L   W   L   +   +  +   L  +       A+ 
Sbjct: 83  AEDDPWSPDALAWPLLE-AIDCSLDEPWCRTLATHLGHFHSGAEAELRRT--RRYEAARR 139

Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
           LA +      +         L  +          + L+     W   +  + A  P    
Sbjct: 140 LAGLFAGYARQR------PRLLVDWLDGDPGDLDEDLRWQPPLWRALVARVAADPPHVRH 193

Query: 212 IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
              +           +  + + G T        L+  +A H +  + LP         +W
Sbjct: 194 AETIARLRRAPSDLPQ-RLSLFGHTRLACTDVELLDALATHHDLHLWLPHP----SDRLW 248

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
             +    TN        ++H   +   L       RE  + L          +       
Sbjct: 249 RAL--AGTNGVIPRRDDTSHRAVAHPLLATLGRDLRELQRGLPADPRTDEYLAGDARPDT 306

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKK 387
           L          + +     ++      V +        +   +   L   L +      +
Sbjct: 307 LLGWLQSDIAANAIRPVGRSLAAGDRSVQIHNCHGPARQVDVLREVLLGLLADDPTLQPR 366

Query: 388 KSALITADRNLARRVK----------LELTRFGINIDISAGIPLSTT-LHSSILTSLLNA 436
              ++  D      +                        A   L  T     +   LL  
Sbjct: 367 DILVMCPDIESYAPLIMADFGLGDVVHGAHPAHQLRVRLADRSLIQTNPLLGVAAQLLAL 426

Query: 437 IFKLNDFMAIATLVKHPLAKFGF----------PEKYLSRAKNALELVALRGNKNSYDIM 486
                    +  L + P  +  F                           R   +   + 
Sbjct: 427 AGGRVRASEVLNLAQTPAVRARFGFTDDDLEAITGWVRQANIRWGLDRQHRRPYHVDFVH 486

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
           +     +DRI      +   +     +    +++   V    Q    +   +   +S  G
Sbjct: 487 NTWRFGIDRILAGVAMSDDSNAWIDATLPLDDVSSNRVQLAGQLAEFVARLQHVLDSLTG 546

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              +++W          + L    +  + W   + +   +  S    + +       +  
Sbjct: 547 ARPLTEWLT---AVADGIALLTRVRDADEWQSGQLQREFAAVSAQAGSRADTVLRLPDVR 603

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            ++TR + G   +    ++ TL +   +  R +    + L GL++G++            
Sbjct: 604 ALLTRHLSGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGLF---PRLGVVDGD 659

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRH----LIYTRSLRENNIPTIASRWLQRLLVL 722
              S   +        +       A G       + YT +   +  P   +  L  LL  
Sbjct: 660 DALSRCPMTGERDIRSEDRQLLLDAIGAATEKLVITYTGANEYSGQPRPPAVPLAELLDT 719

Query: 723 GGTDFFDNLKKR 734
                 + ++ R
Sbjct: 720 LDITTAEPVRDR 731


>gi|313819374|gb|EFS57088.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL046PA2]
          Length = 1078

 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 84/897 (9%), Positives = 216/897 (24%), Gaps = 162/897 (18%)

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +       A   +    G +++     + P    ++         + +    D     
Sbjct: 234  ALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQWEILRRA--FHGHSNLWLIGDPKQSI 291

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +      +    + + ++  H           LD+     K +    N ++  + +  
Sbjct: 292  YAFRGADIHAYQDAAQSASHVLH-----------LDVNYRTDKPIVEAVNTLFSNAQLGH 340

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDEN 385
               +   T+  + + I        +        +  ++A    +   + +          
Sbjct: 341  DISMELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQAPAGAQLNTATSDQ-------- 392

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                       +L  +V + L    +  D     PL  T  + ++ +         +   
Sbjct: 393  -------FVTEDLVNQVIMMLEGGTVVQDGDGLRPLRPTDIAILVRTRRR----GAELAT 441

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              +    P    G    + S+A                D++ L   + +     +    +
Sbjct: 442  ALSQAHQPAVFSGASPVWSSQAA--------------EDLITLLEALENTDERLRTRLCL 487

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                     +       +   +   +    +  T         +      + V  +    
Sbjct: 488  SDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAALHRPGVLVRLVSM-- 545

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                R + +L    +   +++   ++  T +        WI    +L   +  +      
Sbjct: 546  AGGERYVTDLRQGAQKAHIAACEGRLTATATAA------WIREQQQLAGDDEPRRLDSDQ 599

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------- 672
              + I+   E++ L F  ++L  +  G  PK +   P +    Q  +             
Sbjct: 600  QAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLDISSQGTDRSIA 659

Query: 673  -NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGT----- 725
                  ++        +      R  +              A + L  +    G      
Sbjct: 660  IESHEEDERGENLRLLYVALTRARSAVRLWWSPCPLRHRWSAFQRLVEMDRTTGELGSGV 719

Query: 726  --------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                     + ++            + L  +          P          ++ +    
Sbjct: 720  AGTDPGTLPWLNSGPIATVIAPANQKLLTRSVSAQPRACVVPRTLTRPLDTAFARTSYSG 779

Query: 778  LINDPYAVYARRILKLDFIPHFKKD------------PDRTDRGTLFHNIITEL------ 819
            L  + +A  +  +           +            P  T  GTL H ++  +      
Sbjct: 780  LTANLHAAVSEPMTDGLIDEPVDDETVDDTAPGLCGLPGGTSFGTLVHTVLEYIDTAVID 839

Query: 820  --------------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKIS 864
                          +    +    E+   ++Q++ S          +          +++
Sbjct: 840  LSSEVLSITRRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMN 899

Query: 865  HSFLEHEEKIQSSIEKIFV------------------NIPAKMAIESIGIH--LTGFADR 904
                  +    +++  +                     I A +      +   LTG  D 
Sbjct: 900  FELAMAQSGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDA 959

Query: 905  IDLLKSGFVDITDYKTGDNPKKETA---------------QKLIDPQLSLEAAALKAGSF 949
            +     G   + DYKT   P                          Q  L +AAL     
Sbjct: 960  VLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRTMMFSSHYPLQGLLYSAALHRFLA 1019

Query: 950  SQIDCRKVA------NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNLIEI 997
            S +     A         ++R      +         ++     EL E   + L  +
Sbjct: 1020 SSLPGYDPATHLGPIGYLFVRGMADRPVPDGDMPDGVFTWHPRPELIEAISERLGGL 1076


>gi|327542150|gb|EGF28643.1| ATP-dependent DNA helicase PcrA [Rhodopirellula baltica WH47]
          Length = 787

 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 75/685 (10%), Positives = 174/685 (25%), Gaps = 121/685 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+RS    +   +      + +      ++                     
Sbjct: 57  LTFTNKAADEMRSRVNLLAPNQPVW---MGTFHRFCAQQLRRYAP--------------- 98

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
             +  L   +        K     +  S  +S ++     + +A  I   +      E +
Sbjct: 99  --MVGLAENYSIYDSSDSKSAMKRAIASAGVSTSHTSP--EQIASAISNAKNRLITPEIM 154

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----K 224
                                    + ++L+  NA           R   E+        
Sbjct: 155 AQQTGRAGDTVAAK-------VYPVYQQQLLTANAVDFDDLLFHFARLLRENPEVRSNLD 207

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                I++     +  A   ++  ++       V    D       W      +      
Sbjct: 208 EKLKYIMVDEYQDTNLAQYAIVRALSVDHPNLAVT--GDPDQSVYGWRGADLNNILDFEK 265

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                 +P     +L        E ++    +      R      +  P           
Sbjct: 266 -----DYPAVKTVRLEQNYRSTPEILRVADQLIRHNRRRKQKNLFTDNPTG--------- 311

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLDENKKKSALITADRNLARR 401
                         V L + ++  +EA  IA  +     + +   +  A++     L R 
Sbjct: 312 ------------EAVTLRQYEDGYKEADGIADEIANQMIAGNAEPRDFAIMCRMNALTRS 359

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           ++  L   GI   I  G+          L + L+ I      +A   ++  P        
Sbjct: 360 IEHALRNRGIPYQIVNGLEFYQRKEIKDLLAYLHLINNPRHDVAFQRVINTP-------- 411

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                                     + +  L+RI    ++  +P  ++    ++ +   
Sbjct: 412 -----------------------TRGIGAKTLERIQRFADDHRIPMLEAARRVDEIDTLS 448

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK--LTVTCLQNVCLDEHRKLPNLWFEE 579
                ++     L      K +      +    +    V  L+    ++    P    +E
Sbjct: 449 KRAKTLVTSFIRLYDRLCIKATATLEDLLRFLIEEIQFVAYLERTTPEQQDNNPIANVDE 508

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                        E GS            + ++          + ++ + ++    ++ L
Sbjct: 509 FISAAVEFDQMHPEDGS--------LEAFLEQVALVSDTDAFEDSNNRVTLMTLHAAKGL 560

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---NLKTAEKYIGQAAHDFEMANGTRH 696
            F  + +  + + + P   +K        +  L    +  AE+++  +            
Sbjct: 561 EFPRVFIIAVEDNLLPHRRSKEDETQLEEERRLLFVGVTRAEQWLQISYAKL-------- 612

Query: 697 LIYTRSLRENNIPTIASRWLQRLLV 721
               RS R  N P I S +L  L  
Sbjct: 613 ----RSFRGENQPAIPSMFLGELPR 633


>gi|154488221|ref|ZP_02029338.1| hypothetical protein BIFADO_01795 [Bifidobacterium adolescentis
           L2-32]
 gi|154083372|gb|EDN82417.1| hypothetical protein BIFADO_01795 [Bifidobacterium adolescentis
           L2-32]
          Length = 1371

 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 62/530 (11%), Positives = 143/530 (26%), Gaps = 31/530 (5%)

Query: 158 IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA--SKYWTERLVELNASSPVGYQIALM 215
            +     +   L   K  +           L +          L     S        L+
Sbjct: 259 RMREYRAQCHQLCVYKTAQLAGTARKRDLLLDLVADYHAEKRALNMAEFSDFTIAAFQLV 318

Query: 216 RAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIW 271
                     +     +++     +    A L++ +  A+  + + V    D       W
Sbjct: 319 TRFPSIGATYRKRYTHVLLDEYQDTSTTQAALLAALFHADSTHRSAVNAVGDPFQSIYAW 378

Query: 272 NTITEKSTNITSSNTT-YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
              +  +  +   +    +T   Y+L        +  E    L      +  R    S  
Sbjct: 379 RGASPGAFRMLQHDFGHDATDKPYTLTVTRRNSRMVLEAANNLTKPLR-LPARRRGSSLM 437

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA----LRMSLDENK 386
                       +  E  +  +        +       ++AI++       L     +N+
Sbjct: 438 REVDVPPLANIDNAPEGTLGVLGYATFGQEIDAIVRFAKQAIALHTPTENELADGAKDNR 497

Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              AL+   +      +  L + G+   +     L        + +LL+ +    D  A+
Sbjct: 498 PHVALLFRSKTQMPAYEDALEQAGLTTLVVGQAALLERPEIKDILALLHVVCDHTDSAAL 557

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL----VLDRIATQKNN 502
             L+  P       +             A R        +            R   +   
Sbjct: 558 MRLLATPRFGLSADDLQALAGIAERLNTAQRYRALVSAGIVEADANPSDADIRATVRAYR 617

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPL----VTYKTNKNSTCGNLSISDWTKLTV 558
             VP+    +    +     LVD +L                +        + +  +  +
Sbjct: 618 DQVPNAVFLIDVLLRGDLRHLVDGVLSRTGAASVIHAGRVIQQVQRTAGHPLPEVVRTAI 677

Query: 559 TCLQ---NVCLDEHRKLPNLWFEEEGKTLSSLFSKII-------ETGSCIKANAIEWIDI 608
           T L    ++ L E  + P+          SSL + +        E  +    +   +I  
Sbjct: 678 TALGLDIDLLLAERMRHPDAGNRVTSHAASSLDAMLSLVDTYLQEIAAQGTPSLRAFISW 737

Query: 609 ITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
           +  L D          +   + ++   +S+ L +D + + G+ +G +P +
Sbjct: 738 VDSLRDASDDNATAPDTPVDVVLMTVHQSKGLEWDAVAVVGMRDGTFPSS 787



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 85/853 (9%), Positives = 200/853 (23%), Gaps = 85/853 (9%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             + L  L+         ALMR  A      +   +           TA+    + +    
Sbjct: 539  KDILALLHVVCDHTDSAALMRLLATPRFGLSADDLQALAGIAERLNTAQRYRALVSAGIV 598

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
                   D  I   +     +    +   +       ++ +  +L               
Sbjct: 599  EADANPSDADIRATVRAYRDQVPNAVFLIDVLLRGDLRHLVDGVLSRTGAASVIHAGRVI 658

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
               +       + +      T+   + D+L  +        + V    A +         
Sbjct: 659  QQVQRTA-GHPLPEVVRTAITALGLDIDLLLAERMRHPDAGNRVTSHAASSL-------- 709

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI--SAGIPLSTTLHSSILTSL 433
             A+   +D   ++ A                  +  ++            T    +L ++
Sbjct: 710  DAMLSLVDTYLQEIA------AQGTPSLRAFISWVDSLRDASDDNATAPDTPVDVVLMTV 763

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEK------YLSRAKNALELVALRGNKNSYDIMD 487
              +     D +A+  +                        +           + ++  ++
Sbjct: 764  HQSKGLEWDAVAVVGMRDGTFPSSQGDRLSVKTDEDHPGGRRDGVWEPPEYFEKAHTWLE 823

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK-NSTCG 546
              S V   +    +        + +     E    L D  +       T +T   +   G
Sbjct: 824  DPSAVPVPVRADADILPRFPHDAPIGGNPVESLDGLDDAEVIDDEVFGTLRTMAVDDMEG 883

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF------SKIIETGSCIKA 600
                S +        + +  DE R           + L                     A
Sbjct: 884  MDPASLYLTQQEEYGRRLHADERRLAYVALTRARYEALLVYSGCNETSRDSRLAEGKKSA 943

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                +       ++G     +   + +  + G+  +  L+       G +   +      
Sbjct: 944  APSNFWLETRDSMNGIVTAVREPDNLSDDVDGSPHTLGLDLPDGYFVGEHARDFENAVVG 1003

Query: 661  NPFLS--RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT----------RSLRENNI 708
            + + +    +  D  L          A     A      + +                + 
Sbjct: 1004 DAWNTPLEPVSDDHTLPWPCDLSADVADKLRAAAEQVRAVESDEPNIAESTGTQGDVADE 1063

Query: 709  PTIASRW----LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
                S      L RL  L   D     +       +     D   +    +         
Sbjct: 1064 SATPSPETGNSLLRLAKLLVADEHLMPEPDAADAGESQDAFDEAVRAKGERILAAGRQNV 1123

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
               +  + S  ++     +    R I  +               GT FH      I    
Sbjct: 1124 TSLQARAGSMGERDSRAYWRGLVRPIPHVASP--------AAQLGTRFHAWAERFIMADA 1175

Query: 825  NKN-----------TPEINHLMKQ-IIDSHFEKEN-----LPPHIDIIWRHLFHKISHSF 867
            + +             +    +   I D+  + +N                   K++   
Sbjct: 1176 DVDGIGGTEGAAGMAAQSRAELIALIGDTQVDADNGGVQSQDAPSQDAQLRDERKLAAWQ 1235

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI------DLLKSGFVDITDYKTG 921
                    +     +      + +  +G  + G  D +      +  ++    + D+KTG
Sbjct: 1236 RRLVASPWAKRRPAWAERQLVVDMPQLGTIVNGKLDAVFFGGLDETDETKRYTVVDWKTG 1295

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
              P+K    K    QL L    L   +   +    +    Y         +    D++  
Sbjct: 1296 VKPRKPDEIKEKLAQLDLYRLLLA--AMEGVPLDAIDACLYY------VSEPHEADRELD 1347

Query: 982  SADELSEKSLKNL 994
            + D+  E+ L  L
Sbjct: 1348 ALDKTEEEILAEL 1360


>gi|224437627|ref|ZP_03658580.1| DNA helicase II [Helicobacter cinaedi CCUG 18818]
 gi|313144079|ref|ZP_07806272.1| DNA helicase II [Helicobacter cinaedi CCUG 18818]
 gi|313129110|gb|EFR46727.1| DNA helicase II [Helicobacter cinaedi CCUG 18818]
          Length = 698

 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 76/698 (10%), Positives = 176/698 (25%), Gaps = 134/698 (19%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           ++      T +A QE+R   + +        P++ +                        
Sbjct: 58  SATLTLTFTNKAAQEMRDRALSLLSNAYQAPPLLCTFHKFG------------------- 98

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                L   R  +    +  + +  L  +   ++  S + A+ ++      I  ++    
Sbjct: 99  -----LLFLRFYIKVLEREANFVV-LDSDDKKAILKSLSKALPVSH-FDSYISNMKNSFL 151

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI-----ALMRAEA 219
                       +   +      +      +   + + N                 R++ 
Sbjct: 152 SP---QEAAAYAHSPEY----KLMNRIYAEYESYIQKKNLLDFDDLLYLTYKILSQRSDI 204

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
              M      I++     +     +++ ++    N   V+   D       W      + 
Sbjct: 205 AKEMSQRYQYIMVDEYQDTNELQYKILKSLCTTHNNLCVV--GDDDQSIYGWRGADIGNI 262

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
              +   +                          G  + ++        +     +    
Sbjct: 263 LRFAKEFS--------------------------GATTIKLEENYRSSEEILQAANALIA 296

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRN 397
            NT+ L   + +++     V +IE D+E +EA  +A  +    +  EN    A++     
Sbjct: 297 HNTERLGKNLKSVKGSIQAVRVIENDDEAQEATFLAKEIARLCENGENPSDIAILFRVNA 356

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
           L+R ++    RF I   +   +          L S L  I   +D  +   ++  P    
Sbjct: 357 LSRSIEESFNRFKIPYKLIGAVRFYERAEIKDLLSYLRLIVNADDDFSFLRIINRP---- 412

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                              +          L+ L                  S L+  ++
Sbjct: 413 -------------------KRGIGKVTQSKLEQLSQ------------SKGLSCLACLEQ 441

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                      +  T LV  + + +       +S+  +     L                
Sbjct: 442 YPLESKAHIGEKAYTALVKLQKDLSKWRNMTDLSEMIEDMQENLIFEFSPLDEVDREGNI 501

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            E                  I        + +  L               +  +    ++
Sbjct: 502 YEFYGMFKDY---------VIHNPTNTLDEFLNDLA--LASPSDEAVGDCVSCMSVHSAK 550

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + + G  EG +P +  +N  L             E+ +G  A          HL
Sbjct: 551 GLEFKHIYVIGFEEGFFPLHRGENDELEE-----------ERRLGYVAFT----RAKEHL 595

Query: 698 IYTRSLRE-----NNIPTIASRWLQRLLVLGGTDFFDN 730
               S               SR+L+   ++ G +   +
Sbjct: 596 SLCYSKSRLYRGKREWQLRQSRFLKESGLVEGAESLQD 633


>gi|333028199|ref|ZP_08456263.1| hypothetical protein STTU_5705 [Streptomyces sp. Tu6071]
 gi|332748051|gb|EGJ78492.1| hypothetical protein STTU_5705 [Streptomyces sp. Tu6071]
          Length = 209

 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 18/179 (10%)

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
            E         W     ++   +   E+  +  +E     +  + +++S G+ L G  DR+
Sbjct: 16   EGTAGERLARWLASAERLVERWFTLEDPTR--LEPAEREMFVETSLDS-GLRLRGIIDRV 72

Query: 906  DLLK-SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
            D+   +G V I DYKTG  P+     +    Q+   A  +       +  R++  L Y+ 
Sbjct: 73   DIAPGTGDVRIVDYKTGKAPRP-QYAEGALFQMKFYALVVWR--LKGVVPRRL-QLVYLG 128

Query: 965  LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
                   D +  D          E+  + L  +   ++          R S+      +
Sbjct: 129  SGDVLTYDPVPGD---------LERVERKLHALWQAIEEATASGDWRPRPSK-LCGWCD 177


>gi|260436511|ref|ZP_05790481.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp.
            WH 8109]
 gi|260414385|gb|EEX07681.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp.
            WH 8109]
          Length = 1206

 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/640 (8%), Positives = 151/640 (23%), Gaps = 29/640 (4%)

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
                +++     + P   RL+          ++L   D       +      +       
Sbjct: 393  RYRAVMVDEFQDTDPVQWRLLQRAFGGGERHLLLMVGDPKQAIYRFRGGDLATYMAARDQ 452

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                 H       LLD        ++ L  +      RS +   +  P  ++        
Sbjct: 453  VERIDH-------LLDNFRTTAPLMEGLNRLMAPGLPRSELPVPAVQPRSSAAPPQDAPA 505

Query: 346  ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405
               +    +  S  + +EA+  +  A  +   L+   D       ++ +    A  ++  
Sbjct: 506  LQLLLLSTEAPSSRSALEAELPQRLAAMVLEQLQQRDDLTPADLCVLVSRHQQAEDLRRA 565

Query: 406  LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
            L   G+   +     +  +  + +L   L+A+ +  D   +  L    L          +
Sbjct: 566  LGVCGLPTRLVTQGDVLESEAALLLQWFLDALAEPGDDARLRLLACSGLMTIAPDALEPA 625

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                    +           +      L R       +        L +  + +   +  
Sbjct: 626  LLDQLALQLRGLAEAMPRLGLLGALADLLRGEQMAGLSERGRMLGDLQQAARLVQEAMHR 685

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
              L   T     +  +      +  +              +  HR     +       L 
Sbjct: 686  QGLDVATAADWLRRERLHPSQPVPEARQPHSDQADSAIAVVTVHRSKGLEYPVVICPYLW 745

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                 +         +    + +     +G     + ++ +           +    + +
Sbjct: 746  QAPPAVSGPLWRDPRSGECLVRLDVHWGEGWQAAQQAQREAAAEAERLAYVAVTRAQSQL 805

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
            +         +++    +L     +       +            A   R +  +    +
Sbjct: 806  VLIWARANGQEDSPLPAWLFGAEAAG------DAIDSLTDERLSQALAERQVAIS---ID 856

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
              + ++ S    R  +L       ++ KR            +       +  +     + 
Sbjct: 857  GLVESLPSGKRWRSPLLAEPLALGSIPKRIDRSWGRASYSAWIASSDDVQLHEQGRDRDP 916

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
                 +               AR              P     G   H I+ +       
Sbjct: 917  GAEELTLKST----------AARAEPAWSETGPLTAFPRGAGAGDCLHRILEQFPFSAAE 966

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
             + P       ++I +   +  L P +         ++  
Sbjct: 967  ASEP---RQRLELIAAELRRAGLDPDLQNDVLTGLEQVLQ 1003


>gi|255326996|ref|ZP_05368072.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296213|gb|EET75554.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
          Length = 1564

 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 73/781 (9%), Positives = 177/781 (22%), Gaps = 157/781 (20%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITG---------------KKSTILPIIKSLGDVVEEKFT 90
            V     T++A  ELRS                      ++    P + +          
Sbjct: 122 EVLGVTFTRKAATELRSRMRAGLNTLRRSRRVAPSDEELREGIADPTVLTYHSYANNLVK 181

Query: 91  A-DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
              L L    +  +    +  +LA  I+ +      + KD  P S  ++           
Sbjct: 182 EYGLRLGVEQDAQMLGDAQKWQLAAQIVQYWEGELPLDKDGVPVSAATMINQMLQ----- 236

Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWW------------------LLAADFLKIA 191
                + D       + + +     E+   +                          ++ 
Sbjct: 237 -----LSDECAEHLVEPQQVIDFCTEQLAAYAAVPEPRRETKTEKDILKVQRLLRNRRVY 291

Query: 192 SK---YWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATA 243
           ++    +      +             R            +     +++     +  A  
Sbjct: 292 ARMAMSYARVKARMQVLDFGDLMRFAARIAEADPAIREGERARFKVVLLDEFQDTSHAQM 351

Query: 244 RLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY-STHPQYSLA 297
            L S++             V+   D       +   ++        +       P +   
Sbjct: 352 SLFSSIYGADEAAGIPAHPVMAVGDPKQSIYGFRGASDGQMFSFYRHFPTKHVQPLFLSI 411

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
              + + +          +                           ++        +  +
Sbjct: 412 AWRNDISVLNAANHVAEKLKEVPEWVRAADGDITAAQVPDLRPRCALVGEPGSPAFEQAA 471

Query: 358 D-----VALIEADNEREEAISIAIALRMSLDENKK-----------------------KS 389
                 V L   D++REEA++IA  +     +  +                       + 
Sbjct: 472 AGMVGRVDLTYHDSDREEAVAIAERIAAMRAQAVREYERAYAAHRSGDGSVRPHLKMPEI 531

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A++         +++E  R GI +       L +      L S L  +   N   A+A L
Sbjct: 532 AVLARVHGQLDPIRVECERLGIPVQQVGLGGLLSQPEVVDLVSALRVLADPNRSDALARL 591

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL--------------VLDR 495
           +    A++      +    +  + +     +   + M L+ L                  
Sbjct: 592 LTG--ARWRLGAADMLALGDWAQSLVRERERALREQMALRMLAEAEDADAAAINLQAEHL 649

Query: 496 IATQKNNTHVPHWQ----------------------------------SRLSEEDKELAV 521
            A Q+                                            R S    E   
Sbjct: 650 RAAQERLDETLKGAVEDSSGYASLIEAVENLPQDGADGEPLYGEQYRGRRFSPAALERLR 709

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDW----------------TKLTVTCLQNVC 565
              + +      L              ++ D                             
Sbjct: 710 AFAEQMRVLRAGLSEDLGTLLYEIERTTLLDIELAVRPGTDPLGSRANLDAFHEVAAAYG 769

Query: 566 LDEHRKLPNLWFEEEGKTLS-----SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
           +   R    ++   +G +       +    +   G       + W++       G  +  
Sbjct: 770 MSAPRINAMIYAGSDGVSAEEGDPGARRFLLSSGGVSYVMGFLAWLERADDEEKGLALGV 829

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
                + + ++    ++ L +D ++L GL        T     +S        L+   +Y
Sbjct: 830 VEPDPNAVQLMTMHAAKGLEWDHVLLPGLCGSATGGQTPNLWQMSANAALPWPLRGDREY 889

Query: 681 I 681
           +
Sbjct: 890 L 890



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/490 (11%), Positives = 111/490 (22%), Gaps = 71/490 (14%)

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                  A  +          +              + S   +        + L     + 
Sbjct: 1083 ARANARATYVEQVQRYAWALVEVMAPALAQDWQLAAPSVRARTVAENCTRLNLPVPEWII 1142

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                 E+ +                   A      +      +  + +      + +   
Sbjct: 1143 EATEREKWREAQP------PQPGFSPTVAAALPIEVRGQFAQKNYEDRNPNLGAV-LTAM 1195

Query: 634  LESRLLNFDTLILGGLNEGVWPKNT---AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                 L    +     ++ +         +        +  +N  +  + + +AA   E+
Sbjct: 1196 WPFDPLERPVIWRWASDDALNRGTEAVLRRGQHEQLEREIAINSSSRREAVERAALAVEL 1255

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            A G                      L +     G     +     +         +    
Sbjct: 1256 AVGAGE-----------------DDLHQSGDAAGESANHSASAIPESLRQQAVDWEREAD 1298

Query: 751  QPHYKRPKPFPPLEAQPRT-YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                   +  P L  Q     S S   +L  DP        +     P  ++       G
Sbjct: 1299 LLLLMMGQTDPVLNDQLPGHLSASTFIRLSEDPQG-----TVHQLMRPVPQRPSRAATIG 1353

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQII------------------------DSHFEK 845
            T  H +I E      + +  E       +                            F  
Sbjct: 1354 TAVHALIEEHFGVAPSADPLEAPDAEDTVGVDLPGSAAASAPPADSVDPADQQEQDEFTF 1413

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAIESIGIHLTGFADR 904
            E+     +        ++   F   E            V  P +  IE  G+ L G  D 
Sbjct: 1414 EDDFEESESELDASVQRLWERFATSEWGSDEWKDRIWAVEYPVETHIE--GVSLRGRIDA 1471

Query: 905  IDLLKS---GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL- 960
            +   +        + D+K+G  PK  T Q     QL L        +FS+I       + 
Sbjct: 1472 VFRTEDEDGERWVLVDWKSGSRPKMATMQS-RRFQLGLY-----RIAFSRIMGMDPERIS 1525

Query: 961  -FYIRLKQKF 969
              ++ L  K 
Sbjct: 1526 TVFVYLGGKG 1535


>gi|269218850|ref|ZP_06162704.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211961|gb|EEZ78301.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 831

 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 74/697 (10%), Positives = 178/697 (25%), Gaps = 115/697 (16%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTAD-LLLSYNLNP 101
               +     T +A +E+R       G  +     + +          ++   L      
Sbjct: 55  APGQILAITFTNKAAREMRERLESALGGSAIRTMWVSTFHSACVSILRSEHDALGMRSTF 114

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            + + Q    L +L+     +    I+   P+S             L++ ++D+ + +  
Sbjct: 115 TIYDAQDAQRLMKLV---CREENIDIRAHPPKS-------------LSRRVSDLKNDL-- 156

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                E       ++           L  A   +  RL + NA       ++ +     H
Sbjct: 157 --VTPEQAADDAADQDS-------QVLAHAYAAYQIRLRQANAMDFDDLIMSTVDVLRSH 207

Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNT 273
                  +     I++     +  A   L+  +   A   N   +    D       +  
Sbjct: 208 PDVADHYRRRFRHILVDEYQDTNRAQYELVRALTGTAEDDNHGELTVVGDADQSIYAFRG 267

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
            T ++      +      P+     L       +  +     +     GR          
Sbjct: 268 ATIRNIEDFEKDF-----PEARTILLEQNYRSTQSILSAANGIIANNSGRRPK------- 315

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSA 390
                         ++   +     +    AD+E +E+  +      LR     +    A
Sbjct: 316 --------------RLWTDRGDGEKIVGYVADSEADESAFVVSEIDRLRDDAGISYGDVA 361

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           +       +R V+    R GI   +  G             + L+AI   +D ++I  ++
Sbjct: 362 VFYRTNAQSRAVEDMFVRSGIPYRVIGGTRFYERREIKDALAYLHAIVNRDDTVSIRRIL 421

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P    G   +       A   V+                         +        S
Sbjct: 422 NMPKRGLGAKSEEAVAMHAARWDVSFGAALCDVG----------------DPHPERGPVS 465

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            + ++        V  +                    +  S +  +  +           
Sbjct: 466 GIGKKASATMAGFVSMLQSGRGMAEAGAAPDAILDFAMEESGYLDMLRSSDDPQDESRLE 525

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-IDGETVKPKIEKSSTLF 629
            L  L         ++  +                 D + ++ +  +  +        + 
Sbjct: 526 NLAELHSVAVDFHKANPDA--------------TLADWLDQVSLVSDADQLADGDEGEVT 571

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
           ++    ++ L F  + + GL +G +P   +              L    +   +    + 
Sbjct: 572 LMTVHTAKGLEFPVVFVTGLEDGTFPHMRS--------------LIDPAELAEERRLAYV 617

Query: 690 MANGTR-HLIYTRSLRENN----IPTIASRWLQRLLV 721
                R  L  TR+    +         SR+++ +  
Sbjct: 618 AVTRARQRLYITRAAARASWGAPQEFPPSRFIEEIPD 654


>gi|145594767|ref|YP_001159064.1| hypothetical protein Strop_2236 [Salinispora tropica CNB-440]
 gi|145304104|gb|ABP54686.1| hypothetical protein Strop_2236 [Salinispora tropica CNB-440]
          Length = 322

 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 61/184 (33%), Gaps = 13/184 (7%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
           + S S        P     R I +L   P  ++      RGTL H ++  L        T
Sbjct: 43  SLSPSRAADFKTCPLLYRFRSIDRLPEQPTVEQA-----RGTLVHAVLERLFDLSPAGRT 97

Query: 829 PEINHLMKQIIDSHFEKENLPPHI----DIIWRHLFHKISHSFLE--HEEKIQSSIEKIF 882
           P     +          E          D   R  F + +   L+     +    +E   
Sbjct: 98  PRAASDLVAPQWERLVAEQPELAALFTDDGEARSAFLRSAAGLLQGYFTVEDPRRLEPAE 157

Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
                   ++   + + G+ DR+D+   G + + DYKTG  P++    + +  QL   A 
Sbjct: 158 RESLISAVVD-EELLIRGYLDRLDVAPDGALRVVDYKTGGAPREAFEARAL-FQLKFYAL 215

Query: 943 ALKA 946
            L  
Sbjct: 216 VLWR 219


>gi|296169026|ref|ZP_06850689.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295896308|gb|EFG75966.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 402

 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/391 (11%), Positives = 91/391 (23%), Gaps = 31/391 (7%)

Query: 27  NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIKS 80
           +  LV          L   SV +   + R   + R             G+ +   P++++
Sbjct: 32  SSLLVAAALAQIDAGLDPGSVLLLTGSGRLGVQARGALTTALLRPRCAGRAAVREPLVRT 91

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL--YPESPLSL 138
           +              +    P      RL+  A    I R  L   ++D      +  + 
Sbjct: 92  VHGYAYAVLRRAAERAGEAPP------RLVTSAEQDAIIRELLAGDLEDGPRAAAAWPAH 145

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                     A  L +++          ++L  L        W  A  F +   +     
Sbjct: 146 LQPALATAGFATELRNMLARCAERGVDPQELERLGRRCRRPEWAAAGQFARQYEQ----- 200

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                    V    A +   A        G   + G+     A    +          ++
Sbjct: 201 ---------VMLLRAAVGTAAPQATTPALGAAELVGAALEAFAIDPELLAAERGRVRVLL 251

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
           +       P A        +    +          +                    + + 
Sbjct: 252 VDDAQQLDPQAARLVRVLAAGADLALIAGDPNQAVFGFRGGESAGLSPASGWCPQDDDAP 311

Query: 319 EMY---GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
            +          + +      +          +I         V +  A +   EA  IA
Sbjct: 312 SVTLTVSHRCAPAVARAVSGIAHRLPGGSGGRRIEGTGPDEGSVTVRLAASAHAEAAMIA 371

Query: 376 IALRMSLDENKKKSALITADRNLARRVKLEL 406
            ALR +   +    + +        R    L
Sbjct: 372 DALRRAHLVDGVPWSQMAVVVRSVPRAGARL 402


>gi|309389724|gb|ADO77604.1| hypothetical protein Hprae_1477 [Halanaerobium praevalens DSM 2228]
          Length = 866

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 68/203 (33%), Gaps = 27/203 (13%)

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL---IKKRINK 826
           +S+ + K L +  +  Y   +L L               G L H I  +L    KK    
Sbjct: 603 FSYYKYKSLKDCYHRFYLEHLLNLAPNLEISPSLSLMTLGILTHQIFGDLMIYAKKTKIM 662

Query: 827 NTPEINHLMKQIIDSHFEK---ENLPPHIDIIWRHLFHKISHSFLEH----EEKIQSSIE 879
            +       +QII    +K   +    +++   + +F  +  SF+      E+ +     
Sbjct: 663 PSQIKESERQQIIKKAIKKNELKIDKDYLNYYNQIIFKSLDSSFIRFAHLLEKYLPEDFS 722

Query: 880 KIFVNIPAK-------MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
            I V  P           +  I  +L+G  D + L K G   I D+KTG           
Sbjct: 723 NILVEWPEWNRELEKYFEVGGIDFYLSGRIDLLLLNK-GEYFIIDFKTGS---------G 772

Query: 933 IDPQLSLEAAALKAGSFSQIDCR 955
              QL   +  L+     ++   
Sbjct: 773 DQKQLDFYSLMLRQNYNKKLAPA 795


>gi|295130850|ref|YP_003581513.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes SK137]
 gi|291376294|gb|ADE00149.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes SK137]
 gi|313771948|gb|EFS37914.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL074PA1]
 gi|313809677|gb|EFS47411.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL083PA1]
 gi|313830013|gb|EFS67727.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL007PA1]
 gi|313832983|gb|EFS70697.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL056PA1]
 gi|314972840|gb|EFT16937.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL053PA1]
 gi|314975738|gb|EFT19833.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL045PA1]
 gi|314983664|gb|EFT27756.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL005PA1]
 gi|315095783|gb|EFT67759.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL038PA1]
 gi|327329836|gb|EGE71591.1| exodeoxyribonuclease V, beta subunit [Propionibacterium acnes
            HL096PA2]
 gi|327442644|gb|EGE89298.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL043PA1]
 gi|327443718|gb|EGE90372.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL043PA2]
 gi|328761483|gb|EGF75007.1| exodeoxyribonuclease V, beta subunit [Propionibacterium acnes
            HL099PA1]
          Length = 1078

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 84/897 (9%), Positives = 216/897 (24%), Gaps = 162/897 (18%)

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +       A   +    G +++     + P    ++         + +    D     
Sbjct: 234  ALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQWEILRRA--FHGHSNLWLIGDPKQSI 291

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +      +    + + ++  H           LD+     K +    N ++  + +  
Sbjct: 292  YAFRGADIHAYQDAAQSASHVLH-----------LDVNYRTDKPIVEAVNTLFSNAQLGH 340

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDEN 385
               +   T+  + + I        +        +  ++A    +   + +          
Sbjct: 341  DISMELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQAPAGAQLNTATSDQ-------- 392

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                       +L  +V + L    +  D     PL  T  + ++ +         +   
Sbjct: 393  -------FVTEDLVNQVIMMLEGGTVVQDGDGLRPLRPTDIAILVRTRRR----GAELAT 441

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              +    P    G    + S+A                D++ L   + +     +    +
Sbjct: 442  ALSQAHQPAVFSGASPVWSSQAA--------------EDLITLLEALENTDERLRTRLCL 487

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                     +       +   +   +    +  T         +      + V  +    
Sbjct: 488  SDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAALHRPGVLVRLVSM-- 545

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                R + +L    +   +++   ++  T +        WI    +L   +  +      
Sbjct: 546  AGGERYVTDLRQVAQKAHIAACEGRLTATATAA------WIREQQQLAGDDEPRRLDSDQ 599

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------- 672
              + I+   E++ L F  ++L  +  G  PK +   P +    Q  +             
Sbjct: 600  QAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLDISSQGTDRSIA 659

Query: 673  -NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGT----- 725
                  ++        +      R  +              A + L  +    G      
Sbjct: 660  IESHEEDERGENLRLLYVALTRARSAVRLWWSPCPLRHRWSAFQRLVEMDRTTGELGSGV 719

Query: 726  --------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                     + ++            + L  +          P          ++ +    
Sbjct: 720  AGTDPGTLPWLNSGPIATVIAPANQKLLTRSVSAQPRACVVPRTLTRPLDTAFARTSYSG 779

Query: 778  LINDPYAVYARRILKLDFIPHFKKD------------PDRTDRGTLFHNIITEL------ 819
            L  + +A  +  +           +            P  T  GTL H ++  +      
Sbjct: 780  LTANLHAAVSEPMTDGLIDEPVDDETVDDTAPGLCGLPGGTSFGTLVHTVLEYIDTAAID 839

Query: 820  --------------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKIS 864
                          +    +    E+   ++Q++ S          +          +++
Sbjct: 840  LSSEVLSITRRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMN 899

Query: 865  HSFLEHEEKIQSSIEKIFV------------------NIPAKMAIESIGIH--LTGFADR 904
                  +    +++  +                     I A +      +   LTG  D 
Sbjct: 900  FELAMAQSGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDA 959

Query: 905  IDLLKSGFVDITDYKTGDNPKKETA---------------QKLIDPQLSLEAAALKAGSF 949
            +     G   + DYKT   P                          Q  L +AAL     
Sbjct: 960  VLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRTMMFSSHYPLQGLLYSAALHRFLA 1019

Query: 950  SQIDCRKVA------NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNLIEI 997
            S +     A         ++R      +         ++     EL E   + L  +
Sbjct: 1020 SSLPGYDPATHLGPIGYLFVRGMADRPVPDGDMPDGVFTWHPRPELIEAISERLGGL 1076


>gi|159037949|ref|YP_001537202.1| hypothetical protein Sare_2353 [Salinispora arenicola CNS-205]
 gi|157916784|gb|ABV98211.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
          Length = 303

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 17/208 (8%)

Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                   + P           + S S        P     R I +L   P  ++     
Sbjct: 2   TADPVTTQQLPPTAEVPATLRASLSPSRAADFKTCPLLYRFRSIDRLPEQPSVEQA---- 57

Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI--------DIIWRH 858
            RGTL H ++  L        TP     +          E                 +  
Sbjct: 58  -RGTLVHAVLERLFDLPPAGRTPTAAGDLVAPQWERLVAEQPELAALFAADAEARAEFLR 116

Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
               +   +   E+  +  +E           ++   + + G+ DR+D+   G + + DY
Sbjct: 117 SATGLLRGYFAVEDPRR--LEPAERESLISAVVD-EELLIRGYLDRLDVAPDGALRVVDY 173

Query: 919 KTGDNPKKETAQKLIDPQLSLEAAALKA 946
           KTG  P++    + +  QL   A  L  
Sbjct: 174 KTGGAPREAFEARAL-FQLKFYALVLWR 200


>gi|32477472|ref|NP_870466.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1]
 gi|32448023|emb|CAD77543.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1]
          Length = 787

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 74/685 (10%), Positives = 174/685 (25%), Gaps = 121/685 (17%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T +A  E+RS    +   +      + +      ++                     
Sbjct: 57  LTFTNKAADEMRSRVNLLAPNQPVW---MGTFHRFCAQQLRRYAP--------------- 98

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
             +  L   +        K     +  +  +S ++     + +A  I   +      E +
Sbjct: 99  --MVGLAENYSIYDSSDSKSAMKRAITAAGVSTSHTSP--EQIASAISNAKNRLITPEIM 154

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----K 224
                                    + ++L+  NA           R   E+        
Sbjct: 155 AQQTGRAGDTVAAK-------VYPVYQQQLLTANAVDFDDLLFHFARLLRENPEVRSNLD 207

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                I++     +  A   ++  ++       V    D       W      +      
Sbjct: 208 EKLKYIMVDEYQDTNLAQYAIVRALSVDHPNLAVT--GDPDQSVYGWRGADLNNILDFEK 265

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                 +P     +L        E ++    +      R      +  P           
Sbjct: 266 -----DYPAVKTVRLEQNYRSTPEILRVADQLIRHNRRRKQKNLFTDNPTG--------- 311

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLDENKKKSALITADRNLARR 401
                         V L + ++  +EA  IA  +     + +   +  A++     L R 
Sbjct: 312 ------------EAVTLRQYEDGYKEADGIADEIANQMIAGNAEPRDFAIMCRMNALTRS 359

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           ++  L   GI   I  G+          L + L+ I      +A   ++  P        
Sbjct: 360 IEHALRNRGIPYQIVNGLEFYQRKEIKDLLAYLHLINNPRHDVAFQRVINTP-------- 411

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                                     + +  L+RI    ++  +P  ++    ++ +   
Sbjct: 412 -----------------------TRGIGAKTLERIQRFADDHRIPMLEAARRVDEIDTLS 448

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL--TVTCLQNVCLDEHRKLPNLWFEE 579
                ++     L      K +      +    +    V  L+    ++    P    +E
Sbjct: 449 KRAKTLVTSFIRLYDRLCIKATATLEDLLRFLIEEIKFVAYLERTTPEQQDNNPIANVDE 508

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                        E GS            + ++          + ++ + ++    ++ L
Sbjct: 509 FISAAVEFDQMHPEDGS--------LEAFLEQVALVSDTDAFEDSNNRVTLMTLHAAKGL 560

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---NLKTAEKYIGQAAHDFEMANGTRH 696
            F  + +  + + + P   +K        +  L    +  AE+++  +            
Sbjct: 561 EFPRVFIIAVEDNLLPHRRSKEDETQLEEERRLLFVGVTRAEQWLQISYAKL-------- 612

Query: 697 LIYTRSLRENNIPTIASRWLQRLLV 721
               RS R  N P I S +L  L  
Sbjct: 613 ----RSFRGENQPAIPSMFLGELPR 633


>gi|161869731|ref|YP_001598898.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis 053442]
 gi|161595284|gb|ABX72944.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis 053442]
          Length = 1204

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 87/910 (9%), Positives = 209/910 (22%), Gaps = 141/910 (15%)

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN--------- 203
            A +   ++       DL+AL+  +      L  D ++  ++   E               
Sbjct: 319  AAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNRSLAEMKKSRRERGFDDLLL 378

Query: 204  ----ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                A +   +   L RA AE+         +I     + P    +   +        + 
Sbjct: 379  DVHTALTDNPHAETLARAVAENWETA-----LIDEFQDTDPLQYEIFQKIF-IAQNRPLF 432

Query: 260  PGLDCHIPTAIWNTIT--EKSTNITSSNTTYSTHPQYSLAKLL-------DFLDIKREDV 310
               D       +              +   Y+    Y     L         L  +   +
Sbjct: 433  LVGDPKQAIYSFRGADIYAYLQAAEDARHRYTLATNYRSHAALIGSIGALFRLKERPFVL 492

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
            + +G            +S          +   D  +     +++  +D    E  +   E
Sbjct: 493  ENIGYSEVGAARAESRLSPKRPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNE 552

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A    +  +    ++   + L+               R   ++ +S    +  +  ++ L
Sbjct: 553  AAGGRLNFKGYPLQSGDIAVLVRTHNEAVMVSAALKKRQVQSVLLS-RESVFASPEAAAL 611

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            ++L+    +      +  ++   +  +   +               +         +   
Sbjct: 612  SALIGFWLEPRRAGTLRFVLTSGIFGYDAQQL----------HDFNQNESEILHWAESAR 661

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
              LD          +  +      E + L+      +      L              ++
Sbjct: 662  TALDNWNQYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAAL 721

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              W +  ++   N   D           E  + L  + +     G         +     
Sbjct: 722  HKWLRDQISLADNNGGDNRAIR-----LESDEDLVKIVTMHASKGLQYPLVYCPFAW--- 773

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
                         + +       L       + L    L+E    +   +     R+   
Sbjct: 774  -----------DAQDTGPSDWQILHQSANRTELLAKAQLSEDEQKQYADEEM-AERLRLL 821

Query: 671  DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS-------------RWLQ 717
             + L  AE+ +   A        T          +++  T+               R  +
Sbjct: 822  YVALTRAEEQLNIYAAYSTNTADTPLAYLIEGSPQDSRETVRQTYAQEKDGIAMLKRNWR 881

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            RL             +       +    D T +      P+            + S   Q
Sbjct: 882  RLADNAPAGTDFVFTEDAPPPAAYRGNADQTAEFAANSIPERGFRFVRHTSFTTLSRHTQ 941

Query: 778  ------LINDPYAVYARRILKLDFIPHFKKD--------PDRTDRGTLFHNIITELIKKR 823
                      P    A   +                   P  T  G   H I+      +
Sbjct: 942  TPDGSEEDACPSLDAAETSVPAMPSETPTASDGISIHNFPKGTQAGLCLHEILENF---K 998

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH------------------------- 858
              +        +   +  +  +E   P +  +                            
Sbjct: 999  FGQAAAGQETFITDKLKKYGFEEIWLPAVAEMAEACQKTPLTGAYGLSDILSECRCPEMG 1058

Query: 859  --------LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLL 908
                       ++   F   +      + +          ++   ++  L GF D +   
Sbjct: 1059 FTLHTEDFGLKRLRDWFARDDI-RLPEVCRAAAE-----TLDFHTVNGFLNGFIDMVCQD 1112

Query: 909  KSGFVDITDYKTGDNPKKETAQK-----------LIDPQLSLEAAALKAGSFSQIDCRKV 957
              G + + DYK+       +A                 Q  + A A       +      
Sbjct: 1113 PDGNICVIDYKSNHLGTDASAYTQQAMDEAVAHHHYYLQALIYAVAAARYFKLRGQPPAA 1172

Query: 958  ANLFYIRLKQ 967
             ++ Y+ L+ 
Sbjct: 1173 VSVRYLFLRG 1182


>gi|86139558|ref|ZP_01058126.1| hypothetical protein MED193_00380 [Roseobacter sp. MED193]
 gi|85823741|gb|EAQ43948.1| hypothetical protein MED193_00380 [Roseobacter sp. MED193]
          Length = 1050

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 81/778 (10%), Positives = 180/778 (23%), Gaps = 83/778 (10%)

Query: 189  KIASKYWTERLVELNASSPVGYQIA---LMRAEAEHLMK--GTKGPIIIAGSTGSIPATA 243
            +   + +     +          +    L+R + + L    G    ++I     + P   
Sbjct: 303  QEVLEAYQAAKRKAGLIDYADMIVETETLLRTQPDILAAVLGEIDCVVIDEFQDTNPVQF 362

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             L+  +A     A+++   D       +     + +         +  P     +    +
Sbjct: 363  ALLWQLAQGAKRALIV--GDTKQSIMGFQGADARLSQALQDFHASAVTPLDRNWRSDPRI 420

Query: 304  DIKREDVKRLGNVSNEM---YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                  +  +            R      +    +    R+          I +  +   
Sbjct: 421  MGFVNALGPVLFPQGYNALTPVREETGEPALEVINLPGGRSDSTAGCVADRIARILAGNT 480

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
             +           +  A+R +        A++    +    V   +   G  + +     
Sbjct: 481  HVF--------DKVTKAMRPA---KASDIAVLCYTGSKCEAVAAAIEAHGHPVRLQQSGW 529

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            L  +L   +  + L  I   +D +A  T +     +    +   +     L+        
Sbjct: 530  LG-SLAMRVARAALAYIADPSDRLAALTWLTLGPPRMPIEDALRNAVDRVLDTH------ 582

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                     + ++   A  +     P   +                I      L      
Sbjct: 583  ---------TALVPLAALHEAEQQRPVVDTVAEMLRSTNLREWAAGIDGPAQALADLARL 633

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
            +       S++   +                +     ++                     
Sbjct: 634  EAEAQTFDSLATDLRSAAGFHGYGMQIFLGWINAQ-TDKAWDKHPDPDGWSSSGIEISTW 692

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            ++ +  +    +I G                    +    FD     G            
Sbjct: 693  HSAKGREWPITIIAGLDRAFAERPG----------TLSAEFDGFKDLGNVLSHANLGYLP 742

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
                             +     A   +      R  +     RE      ++  +  LL
Sbjct: 743  KFDAPETQAVFAEAHQEQDEQEAARELYVALTRARDRLILALPREKTKARDSAERMVDLL 802

Query: 721  VLGGT------------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
               G             + F      G   +        +   P +   +        P 
Sbjct: 803  RDRGGLQSGAGFLEVCGEQFVANVTDGASDVPEVEPTSASLGYPRFGTSRQNVDAPHTPW 862

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-KKRINKN 827
              S S  + + +   AV     L               DRGT+ H     L  +  +++ 
Sbjct: 863  RQSPSTQEPIASQAPAVIDTVKLGAAIDTSDAVFASAADRGTILHLAFRVLTNQPNLSER 922

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
                  L  ++ID    +                KI  + L  E       +++   +P 
Sbjct: 923  LIAATGLAPKVIDEIATQA---------------KILRNRLAAE-----GYDQLHFELPV 962

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
            +  I   G       D +     G   I D+K+G  P  E       PQL   A  + 
Sbjct: 963  Q-DIRPDGSQTNAIIDCLAEGPDG-FLILDHKSGPCPDPEARFHAYLPQLKSYAQLMA 1018


>gi|154488223|ref|ZP_02029340.1| hypothetical protein BIFADO_01797 [Bifidobacterium adolescentis
           L2-32]
 gi|154083374|gb|EDN82419.1| hypothetical protein BIFADO_01797 [Bifidobacterium adolescentis
           L2-32]
          Length = 1359

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 63/610 (10%), Positives = 148/610 (24%), Gaps = 50/610 (8%)

Query: 55  RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTA-DLLLSYNLNPPVSNIQRLLELA 113
           R    +  E   I+  +      + +L  V     TA        L   ++  ++ + + 
Sbjct: 53  RLGDTVIRELSAISQARP-----VTTLPAVAFRIMTAVRSHAGQPLPKLLNGAEQDVVIR 107

Query: 114 RLILIWRN--------KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           R++                 +++  +  +  S  +        A  L D++  +     K
Sbjct: 108 RVLARHAEHAEHGDECSTCALLRTYFVVADWSGMVVDDATDAFANQLRDMLARMNEIGAK 167

Query: 166 WEDLHALKNEKYGMW-------------WLLAADFLKIASKYWTERLVELNASSPVGYQI 212
            E   AL +                   W LA       ++   E   +          I
Sbjct: 168 PELEDALISRAADEHGTLDERRERLRVQWRLAFALRAEYNQAINEAYPDQYRLDASQLMI 227

Query: 213 ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
               A  E         +I+     +  A    ++ +     G  +L   +       + 
Sbjct: 228 DAAAAVNEAETSDLPKLVIVDDFQDATLAGFDFLTAL--RNRGVRLLLVGNPDEAVQTFR 285

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
                     S         Q  L   L  L+                    + ++ +  
Sbjct: 286 G---------SYPEYLFNMAQSRLGARLVRLEPS----HMAEGTDLAAVASRVSLTIAST 332

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS--- 389
                 + N       I   +     +      +  EE   +   ++    E+ +     
Sbjct: 333 ESTDDALANRPGKMPAIAIPETRDGSLEAAMYRSTVEELDDVVWKIKTEHLEHGRDWNDM 392

Query: 390 ALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
           A+I  D    R     L   G+ +  S+   PL        L S++         +A ++
Sbjct: 393 AVIAHDNATVRTFGERLRADGVPVRYSSVTRPLKDEPFVQGLFSMIELAELKRQGIATSS 452

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
           +       +             +     R  +       + +L         +       
Sbjct: 453 MNLDTAGAYVRSRVASIMNSPLITTPGERPARLCVVESAMNALGSLATVLHDDTADPTTS 512

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK----LTVTCLQNV 564
            +       +L     D++    T  V    +      ++ +         +T       
Sbjct: 513 DTSGRALLPQLIDDWNDYVETFHTARVAASASDAENAADMGLPAIDTDDRLMTGERAAED 572

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
             +    +  L+          +   I          A  +  +   L D    + ++  
Sbjct: 573 ADEPSFGMNALYILLLEGDTDRVLDAIASVLGRKDPQAQAFARLWKTLDDTLRSEARLTS 632

Query: 625 SSTLFILGTL 634
               ++L   
Sbjct: 633 HEPQYMLDCA 642



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 892  ESIGIHLTGFADRID--LLKSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            + + + L+G  DR++      G   V + DYKTG  P   +     D QL      L   
Sbjct: 1144 DRLTVRLSGRIDRLEHRRTADGREQVRLIDYKTGKVPNGRSLFS--DLQLVCYQLGL--- 1198

Query: 948  SFSQIDCRKVANL 960
            +F +   ++ A  
Sbjct: 1199 AFPEHGGKRGAQA 1211


>gi|240139168|ref|YP_002963643.1| hypothetical protein MexAM1_META1p2591 [Methylobacterium extorquens
           AM1]
 gi|240009140|gb|ACS40366.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 886

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 77/658 (11%), Positives = 156/658 (23%), Gaps = 76/658 (11%)

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD- 383
             +  +++    S     +    ++         V++  A   R E +      R  +  
Sbjct: 171 AHVPVTWVAGPRSVPDWVEAAGIRVVTCAPERPAVSVCSAATPRHEVLEALRWARELMAS 230

Query: 384 ---ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                   +            V        +++    G P ++        +L + + + 
Sbjct: 231 GQAAPADIAVAACRTEEYDDVVLALRAEANLDVRFVHGAPAASVREGQAAAALADVLVRG 290

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
                +                        L  +   G      + +  + VL R A   
Sbjct: 291 ISQDGV----------------------RRLAALLRDGPGPFAALPERWTRVLPREAPLT 328

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
           + T      + L  ED       V  +   +  LV   +               ++    
Sbjct: 329 DPTAWERLLNSLRAEDFPDGQDHVPALRDVVGVLVQGVSVAAEAGERFLHGLALRIWRKA 388

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
           L                 ++G    +       +              +  L       P
Sbjct: 389 LIEGAPAVVDLTLGRLRIDDGADACASVVWAPASALAAAPR-----RFVRLLGLSSRGWP 443

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
           ++     L     + SRLL+     L   ++      T+    +    +           
Sbjct: 444 QVSAEDRLLSDHLVPSRLLDPFPRPLADRSDFRAILATSAGAVVLSRPRRG------PDG 497

Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                       G       R+    +      R + R                  C+  
Sbjct: 498 RLLGRSPLLREFGAAETYLGRNRVPAHAVGEVDRLMAR---PAEFRATAPAICAAGCWRA 554

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
           W R     T      RP     L    RT+S   +++L+ DP        L L+      
Sbjct: 555 WGRA--ELTAHDGRVRPDHPVVLAILDRTHSARSLRKLLRDPLGFVWTYGLGLETADAAA 612

Query: 801 KDPD--RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
           +         G L H ++   +           +    +   +          +    R 
Sbjct: 613 EPLTLGHQAFGNLLHEVLERAVVALEADGGFAPSTDAGKR-RALAAVLATVAEVWERERP 671

Query: 859 LFHKISHSFLEHEEKIQSSIEKIF-----------VNIPA------------------KM 889
           +  ++       E    +                 V +P                    +
Sbjct: 672 IPPRLIWRRTLDETAALALAALTHPDQPLLGQGSWVEVPFGGQPPKRDHHPLPWDSDATV 731

Query: 890 AIESIGIHLTGFADRIDLLKS-GFVDITDYKTGDNPKKETA-QKLIDPQLSLEAAALK 945
            I   G  ++G+ DR+DL    G   + DYKTG   +  T      + Q  L   A +
Sbjct: 732 TIPGTGFRISGYIDRLDLSHDRGSARVRDYKTGKPREAGTVLDGGRELQRCLYGYATR 789


>gi|237748332|ref|ZP_04578812.1| exodeoxyribonuclease V [Oxalobacter formigenes OXCC13]
 gi|229379694|gb|EEO29785.1| exodeoxyribonuclease V [Oxalobacter formigenes OXCC13]
          Length = 1118

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 76/747 (10%), Positives = 178/747 (23%), Gaps = 89/747 (11%)

Query: 49  IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
           I +P+    + L     +  G  +        +      ++    +         S    
Sbjct: 34  IIMPSAAVKRCLTMAIADTFGVCAN-------VEFSFLAQWLWRQVGHLVPVQKTSPFSS 86

Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-- 166
            + + R++ +   + P         S             LA  LA +++        W  
Sbjct: 87  TVLVWRILGLL--EEPGFADPYPRLSAYLSSSDELMRYDLAARLASLMEQYVIYRPDWLS 144

Query: 167 ------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS--PVGYQI 212
                        D       +    W  A          W     E       PV    
Sbjct: 145 AWSRGERVDIVPADHKKFDTIESDQRWQSAL---------WRRIAAETGTLEKQPVELFF 195

Query: 213 ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
             +  + +         I +       P    ++  ++   +  + +          I +
Sbjct: 196 EAISEDEKKAASLLDSRIHLFCEPSIAPQYIEMLEKLSRLIDIELYVLNPCREYWFDIVD 255

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS--MVISKS 330
           +           +  + T        LL     + +      +   +   R     IS +
Sbjct: 256 SRRLAYLANRQKDLYHETG-----NTLLASWGKQTKASLESMHDRLDNIEREDDAFISNA 310

Query: 331 FLPPDTSDMRNTDILENKIPNIQKC-------FSDVALIEADNEREEAISIAIALRMSLD 383
            L    + + +       +  ++            + +  A +   E   +   L     
Sbjct: 311 ELGVPETLLSHLQDAIFDLRELEPASLSHLGDDGSIRIHVAHSLTREIEILHDQLLQRFA 370

Query: 384 ----ENKKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSL 433
                   +  ++T D + A  +   +       +  I   I+          +  L  L
Sbjct: 371 SDDPPTADRILVVTPDLDAAAPMIEAVFSSHNSHQARIPYTITGLSGNRINPVARALLDL 430

Query: 434 LNAIFKLNDFMAIATLVKHPL-------------AKFGFPEKYLSRAKNALELVALRGNK 480
           L           +  L+  P+              +  F +  +    +          +
Sbjct: 431 LALASSRFSATDVIDLLMQPVIGKTFGFDGDLKTLRNWFADAGICWGLDGAHKAEFDLPE 490

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                       L       +   +P      +        + +  + Q I  L   K  
Sbjct: 491 EDRHSFHDGMHRLFLAYALPDGEQMPLANRLPAGNPSGSQAVALGQLWQFIGGLRRLKRE 550

Query: 541 K----NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                 +     + SD     +T    +   E               +    + + E   
Sbjct: 551 LSKPKTADGWMQTFSDVLDSFMTVSTELIESEREVRSC---------IGEWHAAMAEGSP 601

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
            + A        + R ++G           T+        R L FD +   GL++G++P 
Sbjct: 602 ELLAGFAIARHALERALEGA--GQGSVPVGTVTFAPMDSLRNLPFDHIYAIGLDDGIFPA 659

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASR 714
           +   + F    +    + K   +       D    +  + L  + S +   +N     S 
Sbjct: 660 DRYPDEFDLIGVAPRKSDKLPRESDRNVFLDLV-LSARKSLTLSYSGKNIRDNSAKPPSI 718

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDW 741
            +  LL         +         + 
Sbjct: 719 LISELLKSLKPALAVSNDPADLAAAER 745


>gi|116873698|ref|YP_850479.1| ATP-dependent nuclease, subunit A [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|123466555|sp|A0AL18|ADDA_LISW6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116742576|emb|CAK21700.1| ATP-dependent nuclease, subunit A [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 1235

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/591 (9%), Positives = 157/591 (26%), Gaps = 57/591 (9%)

Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTG 237
           + +K  +  + E             +   ++               +     ++I     
Sbjct: 353 ELVKNFANNFFEEKQRRGVLDFNDLEHLALKILLKNDVPSDVAKSYQKQFKEVLIDEYQD 412

Query: 238 SIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKSTNIT-------SSNTTYS 289
           +      ++  V N       +    D       +                         
Sbjct: 413 TNMVQETILLLVTNSEESKGNLFMVGDVKQSIYRFRLAEPTLFMTKYQEYQQNGEGEGIR 472

Query: 290 THPQYSLAKLLDFLDIKREDVKRLGN--VSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                +     + LD       +L +  V+   Y  +  ++     P ++ M    +L +
Sbjct: 473 IDLSQNFRSRKEVLDATNFIFHQLMDKHVAEIDYDEAAELTLGANFPKSNHMATELLLID 532

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---------------NKKKSALI 392
              N  +   +++  E    + EA +IA  +R  +D                  +   ++
Sbjct: 533 MKSNENESEDELSPQELQKNQVEARAIATKIREMIDNKFPIYDKKLQQNRSIQYRDIVIL 592

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
           +     A  ++  +    I    S       T   + + +LL  I      + +A +++ 
Sbjct: 593 SRAMTSAPDMEEAMKVQDIPFYASNNSGYFETTEVATMIALLKVIDNPYQDIPLAAVLRS 652

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN--THVPHWQS 510
           P+      E    R          +       ++  K + +   A + ++  T + +W+ 
Sbjct: 653 PIVGLNEEELGQIRMA-------KKKGYFFDALLAYKDITVSAAADRISDFITQLNNWRE 705

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
               E+    +  +         +      K       ++ D                 R
Sbjct: 706 LSIRENLTALIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTAFRGLFRFVR 765

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
            +  L    +    +    +  +    +  +A + ++    +I G + K  +        
Sbjct: 766 FVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIISGLSKKFNMR------- 818

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                  LL+ D        +             +   +      + E    +    +  
Sbjct: 819 -DIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAIKQKK-----SREMIAEEMRVLYVA 872

Query: 691 ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                  +   +   +   T  S+   ++     T    +++ + +CYLDW
Sbjct: 873 LTRAEEKLILTATVPDFEKT--SKNWLQVSNQKETILPASIRAKAKCYLDW 921


>gi|33864183|ref|NP_895743.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
 gi|33635767|emb|CAE22092.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
          Length = 802

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 68/732 (9%), Positives = 178/732 (24%), Gaps = 113/732 (15%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF----IEITGKKSTILPIIKSL 81
           L   +         +P   + +     T +A +E++        +   +     P   +L
Sbjct: 36  LTHRIAHLIGEHGADP---SQILAVTFTNKAAREMKERLELLLAQRLAQSQFGQP-WSTL 91

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLE--LARLILIWRNKLPDIIKDLYPESPLSLP 139
             V + +    +         +     L    L   I  +++K        +     +  
Sbjct: 92  PPVEQRQLRTRIYREVTKELWIGTFHALFARMLRYDIDKFKDKEGLTWTKQFSIYDEADA 151

Query: 140 ISPANAIWLAKNL------------ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
            S    I   + L               I   + +    + L A  + +           
Sbjct: 152 QSLVKEIV-TQELQLDPKRFEPKKVRWAISNAKNQGWFPDQLAAQVDGQR-------GKL 203

Query: 188 LKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                + + + L   NA       +  +       +           +++     +    
Sbjct: 204 TVETYRRYRKALAANNALDFDDLLLLPVQLLQQNEQIRRYWHNRFRHVLVDEYQDTNRTQ 263

Query: 243 ARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
             L+  +              G  V    D       +             +        
Sbjct: 264 YELIKLLVTDGREPETFEDWQGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD----- 318

Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                         +          ++       S      +     NT+ ++  +   +
Sbjct: 319 --------------KASDDSTRTMVKLEENYRSTSTILEAANALIANNTERIDKVLRATR 364

Query: 354 KCFSDVALIEADNEREEAISIAIALR----MSLDENKKKSALITADRNLARRVKLELTRF 409
                + L   D+E  EA ++   +R       +      A++      +R ++  L R+
Sbjct: 365 GEGELITLTRCDDEIAEAEAVVHRMRMLEAAHPEFRWGDVAVLYRTNAQSRAIEESLVRW 424

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            I   +  G+          + + L  +    D +++  ++  P    G           
Sbjct: 425 RIPYIVVGGLRFYDRREIKDVLAYLRLLVNPADTVSLLRVINVPKRGIGKTTLQRLA--- 481

Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                                          +  +           D E    L     +
Sbjct: 482 -------------------------------DAANQLGIPLWDVVSDAEAVRSLGGRSAK 510

Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
            +        +   +  +   S+  +  +   ++  + E         EE  + L  L +
Sbjct: 511 GLLQFCELINDLQCSSQDQIPSEMIQQVME--KSGYISELITEATDEAEERRRNLQELVN 568

Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
             ++     + +       +           K   +  + ++    S+ L F  + L G+
Sbjct: 569 AALQYQEENEES--NLEGFLASAALASDADSKDTAADRVTLMTLHSSKGLEFPLVFLVGM 626

Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
            +G++P   + +   S   +  L      +   +        +          +R    P
Sbjct: 627 EQGLFPSYRSLDDQSSLEEERRLCYVGMTRAKERLF-----LSHASERRLWGGMR---QP 678

Query: 710 TIASRWLQRLLV 721
            + S +L  L  
Sbjct: 679 AVPSLFLAELPE 690


>gi|297571780|ref|YP_003697554.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932127|gb|ADH92935.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
          Length = 1156

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/600 (10%), Positives = 148/600 (24%), Gaps = 56/600 (9%)

Query: 186 DFLKIASKYW--TERLVELNASSPVGYQIALMRAEAEHLMKGTKG--PIIIAGSTGSIPA 241
             L     Y+   + L  +  +  V +   ++   A+      K    +++     +   
Sbjct: 259 QLLDSVEAYFAKKKELGLIEFADQVSWATRIVEQVADVRESLQKAFPVVLLDEYQDTSVN 318

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            AR + TV    N   V    D +     W   +  +      +       Q SL     
Sbjct: 319 QARFLKTV--FANARSVTAVGDPNQAIYGWRGASANAFPDFVRDYQVPNEAQLSL----- 371

Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                          +      + +++ +              ++   P       +V  
Sbjct: 372 ---------------TQAFRNSTSILNAANRVTQGKLSYGNLSIKQLRPGPNAGGGEVVR 416

Query: 362 IEADNEREEAISIAIALRMSLD----ENKKKSALITADRNLARRVKLELTRFGINIDISA 417
           +      +   ++A  L+  L     +    +A++  + +        L   GI  ++  
Sbjct: 417 VHRHYAADTYQALACRLKQELQGSESQTPPTAAILVRNHSFENAAIEALEAEGIPYEVIG 476

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
           G  L       ++ SLL  +   +    +  L        G  +     A         R
Sbjct: 477 GKSLIVRPEVRVVRSLLELLANPDRNDQLIYLFN--FFGLGVQDIRAFSAIAKEHAHGER 534

Query: 478 ----GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                             +   +             +    E        + H+   +  
Sbjct: 535 EQLLARIRVKSSAAEAEKIAHDLQRPDVRLIDSLMGNHNFTELSSDGQRRIQHLASLVDS 594

Query: 534 LVTYKTN-------KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           L  Y+               +L +   ++          L     L   +  +      +
Sbjct: 595 LQQYRHAGLNNLVSAAIDLLDLPVYAASRAHGGAAVRAALAGFVSLAGDYQADNPYATVA 654

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            F   ++       +      I + L +  +       +  + IL    ++ L +D + +
Sbjct: 655 GFLSWLDLMEARDHSGEAAAAIDSSLGEDIS-----PAAGIVQILTVNAAKGLEWDIVAI 709

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA--EKYIGQAAHDFEM---ANGTRHLIYTR 701
             +    +       PF  +  +       A  E     +A DF+     +  +     R
Sbjct: 710 PEMVSKRFDYVKRAYPFWHKSKEIFPFPLRADSEHVPCYSAQDFDNDDDPHAAKRDALIR 769

Query: 702 SLRENNIPTIASRWLQR---LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
               +      S   +R    +          L       +    K      +   +  +
Sbjct: 770 YGEYDQEIRTHSGDEERRLAYVAFTRPRSLLMLLTYDIRDVAEAEKKYQAVCERPAETSE 829



 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 67/198 (33%), Gaps = 27/198 (13%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             + S++  L++D    +     +    P  +     +  GT  H  I    +  +  +  
Sbjct: 951  LTASDVVALMHDADKFF-----RDQRRPVPQPIMAASRTGTAVHEAIAHYFEAPLTLD-- 1003

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
                     IDS  E + +P  +D+       ++       E+   + +  + +  P ++
Sbjct: 1004 ---------IDSVLEPDQMPIDMDMQISDERQRVL--IERFEQSRFAGLPALAIEQPVEI 1052

Query: 890  AIESIGIHLTGFADRIDLLKS--GFV--DITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
             +    +      D +    S  G +   I D+KTG +P  E  +   + QL L   A  
Sbjct: 1053 HLAGYPV--RCVIDAVLDTSSIPGCLPVTIVDWKTGRHPSDELVKS-RELQLGLYRLAWS 1109

Query: 946  AGSFSQIDCRKVANLFYI 963
                  +    +   FY 
Sbjct: 1110 RA--HNVPLSDIDACFYY 1125


>gi|313837609|gb|EFS75323.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL037PA2]
 gi|314927510|gb|EFS91341.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL044PA1]
 gi|314972548|gb|EFT16645.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL037PA3]
          Length = 1035

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 110/1063 (10%), Positives = 240/1063 (22%), Gaps = 148/1063 (13%)

Query: 44   LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV-VEEKFTADLLLSYNLNPP 102
            + ++ +    + A +ELR    E      ++L   +   D   E            +   
Sbjct: 4    MENLLLVTFNRSAARELRGRVYERLVNTRSLLAGSRKPSDPCDEALIRLGQDGLTRVESA 63

Query: 103  VSNIQRLLELA--RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID--- 157
            +    + +             +L  +         ++     A  +     LA  +D   
Sbjct: 64   LDAFDKAVITTTHEFASRMLVELGVLSDHDPSSVLMTDLTPLATEVSDDHYLARYLDCDH 123

Query: 158  -----IIETEEKKWEDLHALKNEKYGMWWLLAADFL---KIASKYWTERLVELNASSPVG 209
                             +            ++A  L   +   K   +R       +   
Sbjct: 124  PPSVREKRELSCDVAVKYGEVPISSKEDMQVSAQDLMWAQSVRKDVRKRSRLRALHTFDD 183

Query: 210  YQIALMRAEAEHLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                L+ A  +                 +++     + P     +         + +   
Sbjct: 184  LISDLVDALRDSDRGPLACATLANRFRLVMVDEFQDTDPLQWETLQRA--FHGHSNLWLI 241

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ--YSLAKLLDFLDIKREDVKRLGNVSNE 319
             D       +      +    + + +Y  H    Y   K +           +LG+    
Sbjct: 242  GDPKQSIYAFRGADVHAYQDAAQSASYVLHLDVNYRTDKTIVEAINTLFGSAQLGHGIPM 301

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                +           T+    +   +       +  ++V L    ++R     +   + 
Sbjct: 302  GSVTARHQESRIATAATNGPHYSW-SQPFQIRCIQAPANVRLDTTASDRLVTEDLVNQVI 360

Query: 380  MSLD--------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            M L+                    A++   R     +   L++       S  + + ++ 
Sbjct: 361  MMLEGGTVVTDDDGEVRPLRPNDIAILVRRRRRGAELAAALSQAHQPAVFSGALSVWSSQ 420

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
             +  L +LL A+    D      L    L      +   S        +A+   + S   
Sbjct: 421  AADDLVTLLEAL-DNTDERLRTRLCLSDLIGATPADLAASD-SRVRSDLAIDLARWSSTW 478

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
                       A  + +           E        +             +        
Sbjct: 479  TMTGVWGTIEAALHRPDVLTRLVSMTGGERYVTDLRQVAQK---------AHIAACKGML 529

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
               + + W +      +            L  +++  T+       I     +    +  
Sbjct: 530  TATATAAWIR------EQQQQAGDDDPRRLDSDQQAVTI-----MTIHEAKGLGFPVVLL 578

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
             DI +     +++   +        +  + S+  +    +     +            L+
Sbjct: 579  PDIASAWAPKKSISGPVVWHDGQRRVLDISSQGADRAIAVESHEEDERGENLRLLYVALT 638

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
            R  +S + L  +      +   F+             L           WL       G 
Sbjct: 639  RA-RSAVRLWWSPCPQRHSWSAFQRLVEMDRATGKLGLGNAGTVPGTFPWLN-----SGP 692

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPH-YKRPKPFPPLEAQPRTYSF---SEIKQLIND 781
                      +C              P    RP     +       +    + +  L N 
Sbjct: 693  IATAIAPANQRCLTPTATTQSRARVVPRTLTRPVDTAFVRTSYSGLTADLHAAVPTLANT 752

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
                        D  P     P  T  G+L H ++       I+ +  +++  +  I   
Sbjct: 753  LIDEPVDDKSVDDTAPGLCGLPGGTSFGSLVHAVLE-----YIDTSATDLSAEVLAITRR 807

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEE--KIQSSIEKI--FVNIPAKMAI------ 891
                  LP            ++ HS L         +          +  ++A+      
Sbjct: 808  TLRTSPLPDVPPADLAAGLEQVLHSDLGSLAPGMTLADFSPADRLAEMNFELAMSQSGGS 867

Query: 892  -----------------ESIGIH-------------------LTGFADRIDLLKSGFVDI 915
                                 I                    LTG  D +     G   +
Sbjct: 868  ATMADLASPLCDPSLVPPDDPISGYGKMLVHIPNGNQALHGFLTGSIDAVLRRPDGRYLV 927

Query: 916  TDYKTGDNPKKETA---------------QKLIDPQLSLEAAALKAGSFSQIDCRKVA-- 958
             DYKT   P                          Q  L +AAL     S       A  
Sbjct: 928  VDYKTNRIPGVSKLTPRMYDAHTMRAMMFSSHYPLQGLLYSAALHRFLASSHPGYDPATH 987

Query: 959  ----NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNL 994
                   ++R      I         ++     EL E   + L
Sbjct: 988  LGPIGYLFVRGMAHRPISDGDMSDGVFTWHPKPELIEAISERL 1030


>gi|304390802|ref|ZP_07372754.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304325685|gb|EFL92931.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 877

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 86/700 (12%), Positives = 182/700 (26%), Gaps = 111/700 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T +A  E+R     + G  +  +  + +          A+             
Sbjct: 111 EVLAITFTNKAAAEMRQRVESLVGNAAKYM-WVSTFHSACVRILRAEADTL--------G 161

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           + R   +          L + I       P   P          K+ A  I   + E   
Sbjct: 162 VTRSFSIYD--TADTKALLNRIIKGRGLDPKRFPP---------KSFAAKISQAKNELIT 210

Query: 166 WEDLH-ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEA 219
            E        +K                  + + L   NA        + +       + 
Sbjct: 211 PEVFALGAGVDKMS-------QLTAEIYTEYQQLLRRANAFDFDDLIASTVYLWKAHPDI 263

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMS-----TVANHPNGAIVLPGLDCHIPTAIWNTI 274
               +     +++     + PA   L+         +  + A +    D       +   
Sbjct: 264 LARYRAKFRHVLVDEYQDTNPAQYELIRLLTVGAAGDAQSPAELTVVGDSDQSIYAFRGA 323

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
           T ++     S+   +T                             +Y      S   +  
Sbjct: 324 TIRNIEEFESDFPGAT----------------------------TVYLEQNYRSTGTILS 355

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVA--LIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             + + + +    K          V   L  AD +R+EA  I   L+    E  +  + A
Sbjct: 356 VANAIISENEGRRKKNLWTDAGQGVQAVLYAADTDRDEAAFIVRELQKLRQEGSSWDEFA 415

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           +       +R ++  LTR GI   +  G             + L A     D   +  ++
Sbjct: 416 VFYRTNAQSRSLEEMLTREGIPYRVVGGTKFYDRREIKDAIAYLCAAANPADDGNLLRVL 475

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P    G       R  +  E +             L+  +         +      ++
Sbjct: 476 NEPKRGLGDKAVQTIREVSLRENLDF--------GQALRQFL-----PGGTHHGDLSAKA 522

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                +    +  +  +     PL           G L                      
Sbjct: 523 SAGIAEFVGVLDAMRALDAASAPLDEILDTALEDSGYLP------KLRKSNDPQDDARVE 576

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
            L  L    +  +LS   +++ +      + A+A +  D   +                +
Sbjct: 577 NLAELRNVAQDFSLSEPDARLADFLERISLVADADQLPDTAAQPERPADPAHPAAPPE-V 635

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            ++    ++ L F+T+ + G+ +G++P + +              L+  +    +    +
Sbjct: 636 TLMTVHTAKGLEFNTVFVTGMEDGLFPHSRS--------------LENPQDIAEERRLAY 681

Query: 689 EMANGTR-HLIYTR-SLRENNIPTI---ASRWLQRLLVLG 723
                 R  L  TR + R     T+   ASR+L  +    
Sbjct: 682 VAVTRARQRLYLTRCAARTVFGETVTMPASRFLDDIPAEL 721


>gi|255526103|ref|ZP_05393025.1| ATP-dependent nuclease subunit B-like protein [Clostridium
            carboxidivorans P7]
 gi|255510219|gb|EET86537.1| ATP-dependent nuclease subunit B-like protein [Clostridium
            carboxidivorans P7]
          Length = 1001

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 97/303 (32%), Gaps = 42/303 (13%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
              +S S + + +  P+      +  L      +++    + G+ +H+++     K     
Sbjct: 670  CRFSPSSLNEYLKCPFRYMMNTLFNLG-EEEEEEEFSSLEIGSFYHSVLYRYYSKAQQFQ 728

Query: 828  TPEINHLMKQIIDSHFEKE---NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI--- 881
              +   + + +      +    ++P     +  +  +++  +F+  + K       +   
Sbjct: 729  CFD-EEVFEAVFKKSLGELRKIDIPKEELNLIFNYLYRVLKNFITADIKRMEVFADVTKN 787

Query: 882  -----FVNIPAKMAIESIGIHLTGFADRIDLL---------KSGFVDITDYKTGDNPKKE 927
                 ++        E  G+ +    DR+DL           +G   I DYK       +
Sbjct: 788  SILKPYLLEKFFEEEEVFGVPIRCKIDRVDLEYRKEGNELIPTGRYVIYDYKKSGILGMK 847

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCRKVA--NLFYIRLKQKFKIDCITN--------- 976
               +  D Q ++    ++      +   KV    L Y+ +++                  
Sbjct: 848  DIVQNNDYQTAIYYYVVEKELKKLLKTDKVECMALLYLSIEKTEDTVEKDGIYKTEYKKQ 907

Query: 977  --------DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ-SEYDHL 1027
                    D K      L E    ++++ +  ++ G+  +       E+ +    +++ L
Sbjct: 908  LDFARKRSDIKGDKFTILMEYIKDSILDTIASIKQGKFNYKPMCSFFEEYSTYPCDFEKL 967

Query: 1028 ARV 1030
             R 
Sbjct: 968  CRY 970



 Score = 46.1 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 40/159 (25%), Gaps = 1/159 (0%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
                +A +I  ++      E    +K            + L +  +++ + L E N   
Sbjct: 115 GFHSEIAALIRSLKRNCIDEEKFSKVKENIEDEVLKAKMEDLLLIYRFYNKNLKENNIYD 174

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL-DCH 265
                +  +R             III G T     +  LM  +A + +  I +       
Sbjct: 175 RNDIPLEAIRLAHNFKKISKYNSIIIDGFTDIENISIELMEEIAKYSDINIYVNCPYVNS 234

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
                     +                 Y +      L 
Sbjct: 235 FMEDFLEEEIKSPFEKMGFEIVGEDGELYDVKNDFKELG 273


>gi|145219316|ref|YP_001130025.1| ATP-dependent DNA helicase PcrA [Prosthecochloris vibrioformis DSM
           265]
 gi|145205480|gb|ABP36523.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeovibrioides DSM
           265]
          Length = 728

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/535 (10%), Positives = 136/535 (25%), Gaps = 90/535 (16%)

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARL 245
             + +  +L E NA       I  +     H       +     I+I     +  A   +
Sbjct: 173 IYELYARKLKENNALDFDDLLIKPLELFGNHPEVLEELQELFRYILIDEYQDTNRAQYLV 232

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
              +A+      +    D       W      +      +            KL++    
Sbjct: 233 TKMLASRHRN--IFVVGDDAQSIYSWRGADISNILNFQDDYED-----ARTFKLVENY-- 283

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                                        ++   RN   ++ ++         + LIEA 
Sbjct: 284 -------------------RSTGTILQAANSVISRNQRQIKKELVAKGATGEPLTLIEAF 324

Query: 366 NEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
           NER+EA  +   +R    E   + +  A+       +R ++  + +  +   I   +   
Sbjct: 325 NERQEAEKVGEWIRKLSLEKQLDFRSFAIFYRTNAQSRVLEDTMRQHRLPYKIFGSVSFY 384

Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
                    + L  +    D  ++  ++  P  K G       R                
Sbjct: 385 KRKEIKDAVAYLRFVQNDRDSESLLRIINFPPRKIGDVSIGKLR---------------- 428

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                                 +  +++            LV  +    + + + +    
Sbjct: 429 ---------------DFARERGISLYEAIRCAPQGGYQQRLVSALSSFSSVIESLREIAE 473

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
           +      ++     T         +    +      +E  +++  FS           +A
Sbjct: 474 TGTVYEVLNSLFVQTGLLSLLQAENTPESMARHDNLQELLSMARDFSDH-------NPDA 526

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
               D +  +          E  + + ++    S+ L F  + + GL E ++P       
Sbjct: 527 GMLGDFLENIALASDYDETQESDNFVSLMTVHASKGLEFPVVFITGLEERLFP------- 579

Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
                    LN    E+   +    +      R  I+    +   +       L+
Sbjct: 580 ---------LNCYEPEQMEEERRLFYVAVTRAREKIFLSWAQSRYLYGQPQHCLR 625


>gi|314960470|gb|EFT04572.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL002PA2]
 gi|315085342|gb|EFT57318.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL002PA3]
          Length = 1078

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 84/897 (9%), Positives = 216/897 (24%), Gaps = 162/897 (18%)

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +       A   +    G +++     + P    ++         + +    D     
Sbjct: 234  ALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQWEILRRA--FHGHSNLWLIGDPKQSI 291

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +      +    + + ++  H           LD+     K +    N ++  + +  
Sbjct: 292  YAFRGADIHAYQDAAQSASHVLH-----------LDVNYRTDKPIVEAVNTLFSNAQLGH 340

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDEN 385
               +   T+  + + I        +        +  ++A    +   + +          
Sbjct: 341  DISMELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQAPAGAQLNTATSDQ-------- 392

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                       +L  +V + L    +  D     PL  T  + ++ +         +   
Sbjct: 393  -------FVTEDLVNQVIMMLEGGTVVQDGDGLRPLRPTDIAILVRTRRR----GAELAT 441

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              +    P    G    + S+A                D++ L   + +     +    +
Sbjct: 442  ALSQAHQPAVFSGASPVWSSQAA--------------EDLITLLEALENTDERLRTRLCL 487

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                     +       +   +   +    +  T         +      + V  +    
Sbjct: 488  SDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAALHRPGVLVRLVSM-- 545

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                R + +L    +   +++   ++  T +        WI    +L   +  +      
Sbjct: 546  AGGERYVTDLRQVAQKAHIAACEGRLTATATAA------WIREQQQLAGDDEPRRLDSDQ 599

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------- 672
              + I+   E++ L F  ++L  +  G  PK +   P +    Q  +             
Sbjct: 600  QAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLDISSQGTDRSIA 659

Query: 673  -NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGT----- 725
                  ++        +      R  +              A + L  +    G      
Sbjct: 660  IESHEEDERGENLRLLYVALTRARSAVRLWWSPCPLRHRWSAFQRLVEMDRTTGELGSGV 719

Query: 726  --------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                     + ++            + L  +          P          ++ +    
Sbjct: 720  AGTDPGTLPWLNSGPIATVIAPANQKLLTRSVSAQPRACVVPRTLTRPLDTAFARTSYSG 779

Query: 778  LINDPYAVYARRILKLDFIPHFKKD------------PDRTDRGTLFHNIITEL------ 819
            L  + +A  +  +           +            P  T  GTL H ++  +      
Sbjct: 780  LTANLHAAVSEPMTDGLIDEPVDDETVDDTAPGLCGLPGGTSFGTLVHTVLEYIDTAVID 839

Query: 820  --------------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKIS 864
                          +    +    E+   ++Q++ S          +          +++
Sbjct: 840  LSSEVLSITRRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMN 899

Query: 865  HSFLEHEEKIQSSIEKIFV------------------NIPAKMAIESIGIH--LTGFADR 904
                  +    +++  +                     I A +      +   LTG  D 
Sbjct: 900  FELAMAQSGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDA 959

Query: 905  IDLLKSGFVDITDYKTGDNPKKETA---------------QKLIDPQLSLEAAALKAGSF 949
            +     G   + DYKT   P                          Q  L +AAL     
Sbjct: 960  VLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRTMMFSSHYPLQGLLYSAALHRFLA 1019

Query: 950  SQIDCRKVA------NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNLIEI 997
            S +     A         ++R      +         ++     EL E   + L  +
Sbjct: 1020 SSLPGYDPATHLGPIGYLFVRGMADRPVPDGDMPDGVFTWHPRPELIEAISERLGGL 1076


>gi|314918017|gb|EFS81848.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL050PA1]
 gi|314920393|gb|EFS84224.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL050PA3]
          Length = 1078

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 84/897 (9%), Positives = 216/897 (24%), Gaps = 162/897 (18%)

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +       A   +    G +++     + P    ++         + +    D     
Sbjct: 234  ALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQWEILRRA--FHGHSNLWLIGDPKQSI 291

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +      +    + + ++  H           LD+     K +    N ++  + +  
Sbjct: 292  YAFRGADIHAYQDAAQSASHVLH-----------LDVNYRTDKPIVEAVNTLFSNAQLGH 340

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDEN 385
               +   T+  + + I        +        +  ++A    +   + +          
Sbjct: 341  DISMELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQAPAGAQLNTATSDQ-------- 392

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                       +L  +V + L    +  D     PL  T  + ++ +         +   
Sbjct: 393  -------FVTEDLVNQVIMMLEGGTVVQDGDGLRPLRPTDIAILVRTRRR----GAELAT 441

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              +    P    G    + S+A                D++ L   + +     +    +
Sbjct: 442  ALSQAHQPAVFSGASPVWSSQAA--------------EDLITLLEALENTDERLRTRLCL 487

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                     +       +   +   +    +  T         +      + V  +    
Sbjct: 488  SDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAALHRPGVLVRLVSM-- 545

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                R + +L    +   +++   ++  T +        WI    +L   +  +      
Sbjct: 546  AGGERYVTDLRQVAQKAHIAACEGRLTATATAA------WIREQQQLAGDDEPRRLDSDQ 599

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------- 672
              + I+   E++ L F  ++L  +  G  PK +   P +    Q  +             
Sbjct: 600  QAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLDISSQGTDRSIA 659

Query: 673  -NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGT----- 725
                  ++        +      R  +              A + L  +    G      
Sbjct: 660  IESHEEDERGENLRLLYVALTRARSAVRLWWSPCPLRHRWSAFQRLVEMDRTTGELGSGV 719

Query: 726  --------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                     + ++            + L  +          P          ++ +    
Sbjct: 720  AGTDPGTLPWLNSGPIATVIAPANQKLLTRSVSAQPRACVVPRTLTRPLDTAFARTSYSG 779

Query: 778  LINDPYAVYARRILKLDFIPHFKKD------------PDRTDRGTLFHNIITEL------ 819
            L  + +A  +  +           +            P  T  GTL H ++  +      
Sbjct: 780  LTANLHAAVSEPMTDGLIDEPVDDETVDDTAPGLCGLPGGTSFGTLVHTVLEYIDTAAID 839

Query: 820  --------------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKIS 864
                          +    +    E+   ++Q++ S          +          +++
Sbjct: 840  LSSEVLSITRRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMN 899

Query: 865  HSFLEHEEKIQSSIEKIFV------------------NIPAKMAIESIGIH--LTGFADR 904
                  +    +++  +                     I A +      +   LTG  D 
Sbjct: 900  FELAMAQSGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDA 959

Query: 905  IDLLKSGFVDITDYKTGDNPKKETA---------------QKLIDPQLSLEAAALKAGSF 949
            +     G   + DYKT   P                          Q  L +AAL     
Sbjct: 960  VLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRTMMFSSHYPLQGLLYSAALHRFLA 1019

Query: 950  SQIDCRKVA------NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNLIEI 997
            S +     A         ++R      +         ++     EL E   + L  +
Sbjct: 1020 SSLPGYDPATHLGPIGYLFVRGMADRPVPDGDMPDGVFTWHPRPELIEAISERLGGL 1076


>gi|294676836|ref|YP_003577451.1| hypothetical protein RCAP_rcc01289 [Rhodobacter capsulatus SB 1003]
 gi|294475656|gb|ADE85044.1| conserved hypothetical protein [Rhodobacter capsulatus SB 1003]
          Length = 871

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 78/731 (10%), Positives = 192/731 (26%), Gaps = 60/731 (8%)

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
           +  ++     +         ++ +  +  ++      + L  ++      +    +    
Sbjct: 29  LVPRAAFDPDAVLAARPGAPWAQSLAVAPVETALAVRRALEALARATETLTPAEVQPDRL 88

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393
           P+     +   L +   ++     +   +       EA +    L +    +   +    
Sbjct: 89  PEGRARAHLGALCDLWSDLGGALPEDLHVWRHVITAEAGAALEPLPLLAPIDCPHATAAE 148

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                A   +  L    ++    A  P  +   +  L  +   +  L   +A  T ++  
Sbjct: 149 TALAQALVRQHGLAPEAVSAAWLARQPSQSACATGALGHVQANLTGLAAPIAPDTSLQIF 208

Query: 454 LAKFGFPEKYLSRAKNA--LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             +    E   + A     L+   +        ++         +A       +P   + 
Sbjct: 209 GLRDPMEEADFAAATVQGWLDRGTIDHAAEVGLLVPEDPAYACALAEAFERVGLPLSGAP 268

Query: 512 LSEEDKELAVLLVDHILQCIT-------------------------PLVTYKTNKNSTCG 546
           +    ++ A  L+  +L  +                           +      +  +  
Sbjct: 269 VGAILRDPAADLIAALLPVLRGPAPRTALASVVISPLMPWPAATGRAIARDLIARGYSRL 328

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              +       +  L+ V             +       SL  +I    S          
Sbjct: 329 WRELDGAGAALLNALRPVASLPALFARLGEIDTLITPPGSLRLQIALLRSQGGERPDWPA 388

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            +                   + +    +    +   LI+ G+    WP+    NPF + 
Sbjct: 389 LLALVAPLPLPGIAAPRTVEGVSVFTENDLPWRSVRRLIVLGMQGRSWPRPQPANPFFTE 448

Query: 667 VMQSDLN------LKTAEKYIGQAAHDFEMANGTRH---LIYTRSLRENNIPTIASRWLQ 717
              + +       L    +   +    F           ++   +          S  L 
Sbjct: 449 TEIALIGTATGLHLPGRARETARRLELFRRQLCAATEAAVLLAPARDMAGARLPPSTALA 508

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE------------- 764
            +  L G     +L    +      +    T + P     +P  P               
Sbjct: 509 LIARLLGQTDPAHLVVDPRQLSPSAQPFALTPRTPDAHAGRPDLPESGDVTLGRDLLALK 568

Query: 765 ----AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE-L 819
               A P   S S+++ LI  P A     I          +  D    GT+ H ++    
Sbjct: 569 GAAGADPPPQSPSQLETLIVSPLAWLLAEI-DARDRIWSPETLDVLVLGTVVHGVLERVF 627

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
             +       ++  L +  +     ++                ++   L   +     + 
Sbjct: 628 PPETPPPAPEDMPRLTEAALAEVIARKASWLAEPAWAAERA-SLAREALRVVQGWARFLT 686

Query: 880 KIF---VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDP 935
           +     +     +A +  G+ + G AD +  L  G   + D+K G +  ++   Q   D 
Sbjct: 687 ETGAMTLANEISLAGDHGGLLMAGRADGLLRLPDGRHLVIDHKRGTSGKRRRRMQLGWDL 746

Query: 936 QLSLEAAALKA 946
           Q++L  A L+ 
Sbjct: 747 QVALYRAMLER 757


>gi|85059009|ref|YP_454711.1| DNA helicase IV [Sodalis glossinidius str. 'morsitans']
 gi|84779529|dbj|BAE74306.1| DNA helicase IV [Sodalis glossinidius str. 'morsitans']
          Length = 684

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 89/368 (24%), Gaps = 26/368 (7%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           LL        R     P     + +    ++A QE+     +     S       +   +
Sbjct: 225 LLVARAGWLLRRKLATPE---QILLLAFGRQAAQEMDERLRQRLDVDSI---QASTFHAL 278

Query: 85  VEEKFT-ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                   +               R   L         +     K         L     
Sbjct: 279 ALMIIRQGNKKAPAVSQLESDGAARRKLLIDHWRQQCREKKAQAKGWRQWISEELDWEVP 338

Query: 144 N---------AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
                     A  LA  L   + +I +      D+     ++    +      L    K 
Sbjct: 339 EGDFWQNDKLAHRLAGRLERWVGLIRSHGGSQADMVDAAPDELREHFQKRIRLLAPLLKA 398

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           W + L E  +    G     +    +         I++       P  ARL++ +    +
Sbjct: 399 WKQALKEEGSVDFDGLIHQAVDILQKGRFVSPWKHILVDEFQDISPQRARLITALCQQNS 458

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
              +    D       ++           +N                 LD      +R+G
Sbjct: 459 ATSLFAVGDDWQAIYRFSGAELTLITAFGANFGGGEPL---------ALDTTYRFNQRIG 509

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            V+N    ++       L   T   +    +  +   +      ++      +R   ++ 
Sbjct: 510 KVANRFVQQNPFQLAKPLNSLTRGGKKAVQILPEDQ-LDALLDKLSGFVTPTQRILVLAR 568

Query: 375 AIALRMSL 382
              LR +L
Sbjct: 569 YHHLRPAL 576


>gi|296185822|ref|ZP_06854229.1| hypothetical protein CLCAR_1261 [Clostridium carboxidivorans P7]
 gi|296049650|gb|EFG89077.1| hypothetical protein CLCAR_1261 [Clostridium carboxidivorans P7]
          Length = 374

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 97/303 (32%), Gaps = 42/303 (13%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
              +S S + + +  P+      +  L      +++    + G+ +H+++     K     
Sbjct: 43   CRFSPSSLNEYLKCPFRYMMNTLFNLG-EEEEEEEFSSLEIGSFYHSVLYRYYSKAQQFQ 101

Query: 828  TPEINHLMKQIIDSHFEKE---NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI--- 881
              +   + + +      +    ++P     +  +  +++  +F+  + K       +   
Sbjct: 102  CFD-EEVFEAVFKKSLGELRKIDIPKEELNLIFNYLYRVLKNFITADIKRMEVFADVTKN 160

Query: 882  -----FVNIPAKMAIESIGIHLTGFADRIDLL---------KSGFVDITDYKTGDNPKKE 927
                 ++        E  G+ +    DR+DL           +G   I DYK       +
Sbjct: 161  SILKPYLLEKFFEEEEVFGVPIRCKIDRVDLEYRKEGNELIPTGRYVIYDYKKSGILGMK 220

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCRKVA--NLFYIRLKQKFKIDCITN--------- 976
               +  D Q ++    ++      +   KV    L Y+ +++                  
Sbjct: 221  DIVQNNDYQTAIYYYVVEKELKKLLKTDKVECMALLYLSIEKTEDTVEKDGIYKTEYKKQ 280

Query: 977  --------DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ-SEYDHL 1027
                    D K      L E    ++++ +  ++ G+  +       E+ +    +++ L
Sbjct: 281  LDFARKRSDIKGDKFTILMEYIKDSILDTIASIKQGKFNYKPMCSFFEEYSTYPCDFEKL 340

Query: 1028 ARV 1030
             R 
Sbjct: 341  CRY 343


>gi|296136948|ref|YP_003644190.1| UvrD/REP helicase [Thiomonas intermedia K12]
 gi|295797070|gb|ADG31860.1| UvrD/REP helicase [Thiomonas intermedia K12]
          Length = 669

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 69/703 (9%), Positives = 158/703 (22%), Gaps = 116/703 (16%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI-IKSLGDVVEE 87
             +       L P  +A++T    T +A  E+R    ++  K+     + I +   +   
Sbjct: 33  HKIGRLLRAGLEPDQIAAIT---FTNKAAAEMRERAAQLVDKRGVASKLAISTFHALGVR 89

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                                          +     D +  L  ++  +   + A    
Sbjct: 90  ILRESGQALGLKP-----------------KFSILAADDVTGLLRDAGATTDNAQARRWQ 132

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
              +L       +      E    +                    + +     +     P
Sbjct: 133 WTISL------WKNAMLTPEAAARVAENDDERVAAKVYARYADMLQAYQAVDFDDLIWLP 186

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
           V               K     +++     +  A   L+  +             D    
Sbjct: 187 VTLLQQHADVREHWQNKLRY--LLVDEYQDTNAAQYDLLRLLVGDKGR--FTAVGDDDQS 242

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS-MV 326
              W                               LD  R        +      ++   
Sbjct: 243 IYGWRGA---------------------------TLDNLRRLQTDWPTLEVIKLEQNYRS 275

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLD 383
            +      +     N  +    + +       V +  A NE EEA  +A    ALR   +
Sbjct: 276 TNAILRAANAIIQSNPKLYPKSLWSEHGEGEAVEVRAAQNEDEEAQMVAARIQALRSGRN 335

Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                 A++    + +R ++  L R  I   +S G           + + L  +   +D 
Sbjct: 336 AELAHIAVLYRANHQSRPLEQALRRANIPYVVSGGQSFFDRAEIKDVCAYLRLLANPDDD 395

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            A    V  P                       R       +  L +       +     
Sbjct: 396 PAFLRAVTTP-----------------------RRGIGPQTLAALSTFAGQWKVSMFEAL 432

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                 + +     +                     +           +  +  +  +  
Sbjct: 433 FRDSMPAAVGARPADHLREFGR-----------LLHDIEWRARTAPAGELLREMLETIGF 481

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
               E         E+  K +      I       K    +    I+ +     ++ + +
Sbjct: 482 RAWLEEHSDNPREAEQRWKNVDDFCGWIERKAEEDKVGLTQIAQTISLI---TQLQERGD 538

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
           +   + +     ++ L +  ++L G  EG+ P  T   P                    +
Sbjct: 539 QRDAVTLCTLHAAKGLEWPHVVLAGCEEGLLPFFTDDRPLTDAS------------QEEE 586

Query: 684 AAHDFEMANGTRH-LIYTRSLR----ENNIPTIASRWLQRLLV 721
               +      R  L+ +   +            SR++  +  
Sbjct: 587 RRLMYVGVTRARQTLVLSWCQKRKQGRGAAGRSPSRFIGEMQT 629


>gi|315181034|gb|ADT87948.1| exodeoxyribonuclease V, beta subunit [Vibrio furnissii NCTC 11218]
          Length = 1214

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 105/924 (11%), Positives = 231/924 (25%), Gaps = 116/924 (12%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY--WTERLVELNASSPVGYQ 211
             + + ++    +   L A                 K + ++  + + L +L+AS     +
Sbjct: 311  AVFEAVQAFLAEPVSLEAPLLAHAITHCRTLLAKAKASKQWLSFDDLLTQLSASLDGDDE 370

Query: 212  IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
              L         +      +I     + P    + S +        +    D       +
Sbjct: 371  GTLAARI-----RTLYPVAMIDEFQDTDPLQYSIFSRIYLPHPQCGLFMIGDPKQAIYGF 425

Query: 272  NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN---------------V 316
                  +     +  +   +   +  +    +      V  L +                
Sbjct: 426  RGADIFTYIKARNQVSAH-YTLGTNWRSSADMVAAVNQVFTLPDSPFIYDNDIPFLPVSA 484

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ----KCFSDVALIEADN------ 366
            S +  GR+ +++    P  T      D    K   +        S +  I          
Sbjct: 485  SPKAAGRAWLLNGEVQPALTYWSMTADAPVTKGAYLDTMAAATASQIQTILTAAQQGKAQ 544

Query: 367  -EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTT 424
              R  AI  + +++          A++    N  R +K  L + GI  + +S    + T+
Sbjct: 545  FRRGGAIQASDSIQAGDSIQAGDIAVLVRTGNEGRLIKDALAQQGIASVYLSNRDSVFTS 604

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
              +  +  LL A+   ++  A+   +  PL      +             AL   K    
Sbjct: 605  AIAPDMQRLLQAVLTPDNDRAMRAALASPLFALNAQQLDALNNDENEWENALNEFKQYRQ 664

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
            +   + ++    A          W      E           +   +      +      
Sbjct: 665  LWLDRGVLPMLRAVLSLRHIAERWLEEPDGE---------RQLTDFMHLSELLQQATQEI 715

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
              +  +  W   ++   +         +  L  E     +       I     ++   + 
Sbjct: 716  DSDHGLLRWLAQSIADAEQGLGGSDEAIQRLESERNLVQIV-----TIHKSKGLEYELVF 770

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG-GLNEGVWPKNTAKNPF 663
               +++     E          TL  +   ++ +   D   L   L         A    
Sbjct: 771  LPFVLSYREASEGKYYDASSGQTLLDISGQDASIQQADKERLAEDLRLIYVALTRAVYGC 830

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
               V        + E      +    +    +           +  T  +          
Sbjct: 831  FIGVAPLRNGRSSKEPTGVHHSALGYLLQNAQQGGLALLAESLHQHTALACVAVTEPPAV 890

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                F  L +         R L +   +            +   +  +  EI     D  
Sbjct: 891  PESVFVPLAEPLPPLS--ARSLSHEIDRLWRITSYSGLVKQGSHQHDASFEIGGFDVDSA 948

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
              +   +L       F         GT  H++  E+   +   +                
Sbjct: 949  DEHDEAVLAEPERSIFTFPRGAQP-GTFLHSLFEEVEFTQPASDEHNT---------RII 998

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEE------KIQSSIEKIFVNIPAKMAIE----- 892
             +      ID  W  +   +  + L            Q +  +    +   + IE     
Sbjct: 999  AELMEREQIDAEWLPVLQSLVDTVLRTPLNGKDLCLNQKAPHQRLTEMEFLLPIEVLSAP 1058

Query: 893  -----------------SIGI-----HLTGFADRIDLLKSGFVDITDYKT---------- 920
                              +G       L GF D +   + G   + D+K+          
Sbjct: 1059 ALNRVVQRHDPLSAKAGDLGFYTVQGMLKGFIDLVFEHQ-GKYYVLDWKSNHLGDEVAAY 1117

Query: 921  -GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCIT 975
             G+   +  A+   D Q  L A AL     S++      +    ++Y+ L+         
Sbjct: 1118 QGERLAQAMAEHRYDLQYQLYALALHRFLRSRLAGYDYQQHFGGVYYLFLRGMDGSSQHG 1177

Query: 976  NDKKKYSADELSEKSLKNLIEIVT 999
                K S     +  L+ L E++ 
Sbjct: 1178 IFSAKPS-----QAMLEELDELIQ 1196


>gi|323701383|ref|ZP_08113057.1| recombination helicase AddA [Desulfotomaculum nigrificans DSM 574]
 gi|323533642|gb|EGB23507.1| recombination helicase AddA [Desulfotomaculum nigrificans DSM 574]
          Length = 1243

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 101/953 (10%), Positives = 230/953 (24%), Gaps = 155/953 (16%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI---IDIIETEEKKWEDLHA 171
            L    + ++ +I    +      +     +   L + LA +      +  ++K+ + L  
Sbjct: 303  LRDKAKERVKEIAATYFYADAELILRDLRSLAPLIQELAQLTIDFMDLYRQKKQAKGLVD 362

Query: 172  LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231
              + ++                   +   +     P      L    AE         ++
Sbjct: 363  FADLEH------------YCLAILLDEESKPGQLVPSPVARELQEQFAE---------VL 401

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
            +            ++  VA   N  +V    D       +                   +
Sbjct: 402  VDEYQDINGVQETILQLVAKPHNRFMV---GDVKQSIYRFRLAEPGLFLSKYQQYGVPEN 458

Query: 292  PQYSLAKL----LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                   L         +          +     G     + + L          D    
Sbjct: 459  GAGCRVDLTKNFRSRSGVVNAVNFVFRQIMTRGAGEVDYDAAAELRYGADFPPREDGAAE 518

Query: 348  KI-------------------PNIQKCFSDVALIEADNEREEAISIAIALRMSLD----- 383
            +                     + +    D  L E D ++ EA  +   +   +      
Sbjct: 519  EPVELYLIDRKEPEVTAVESQEDSEGSPPDEELEELDADQAEARLVGRRILEMVKGTADR 578

Query: 384  ------------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
                                +    L+ A    A     EL   GI             +
Sbjct: 579  PGPPLKVWDKHAGCYRPVTYRDIVILLRATTGRANTFLEELRSLGIPTYADLSTGYFEAI 638

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                  SLL  I      + +A +++ P+      +    R               +   
Sbjct: 639  EVETFLSLLKVIDNPRQDVPLAAVLRSPMVGLKAADLAAIRLCAPAGDFYDAVRTAAGSN 698

Query: 486  MD---------LKSLVLDRIATQKNNTHVPHW-------------QSRLSEEDKELAVLL 523
            +          L++L   R   ++       W                   + +    +L
Sbjct: 699  LGEVSHVLASFLENLARWRTQARRGPLADLIWTLYRETGYYDYVGGMVGGTQRQANLRVL 758

Query: 524  -----------VDHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLTVTCLQNVCLDEH 569
                       +  + + +  +   +   +      S+S   D  ++             
Sbjct: 759  YHRAKQYEGTSLRGLFRFLRFVERLRDTGSDLGSARSLSENEDVVRIMSIHKSKGLEFPV 818

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSC----IKANAIEWIDIITRLIDGETVKPKIEKS 625
              +  L  +   + L+       E G        A  + +  +   LI     +  + + 
Sbjct: 819  VFVAGLGKQFNLRDLTKDMLMHKEMGVGPQIIDLAARVSYPSLPKLLIRQRIKRESVAEE 878

Query: 626  STLF---ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
              +    +    E  +L      L    E         N  L                  
Sbjct: 879  MRVLYVALTRAREKLILVGSVRDLAKSLEKWCGPVNHPNWPLPDGDLLSAKTCLDWLCPA 938

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG--------GTDFFDNLKKR 734
             A H          L    +     + T AS W  +++ +         G D +      
Sbjct: 939  VARHRAGRELL--KLAGCEAEPVQQVATDASSWSVQVVNMADMQGKAVAGQDAYSEWLAH 996

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ-----LINDPYAVYARR 789
             +           T          P+  + A+P   + +EIK+        +    + R 
Sbjct: 997  VRKMEPLADNGYLTEIDRRLGWRYPWSEVTARPAKVAVTEIKRRFDLEANQEEDNEFHRP 1056

Query: 790  ILKLDFIP-HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
            +L          +     +RG+  H ++  +    +          +  ++    +KE L
Sbjct: 1057 VLTTRPRFLQQHQGLTAAERGSAIHLVMQHIPLDGVPD-----EEKIDSLLQQLIQKEIL 1111

Query: 849  PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------- 895
             P    +       I   F     +      K+   +P  + + +I              
Sbjct: 1112 TPEQAAVIDPRL--IIKFFTSPIGRRVLQAPKVKRELPFSLTLPAIEVYPDLSSQAGRDE 1169

Query: 896  -IHLTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKA 946
             + + G  D +     G + + DYK+    P +++       Q++L   A++ 
Sbjct: 1170 LVLVQGVIDCLVDEGDG-LLLIDYKSDKVWPGQQSPVDRYRGQMNLYTRAVED 1221


>gi|282881952|ref|ZP_06290597.1| hypothetical protein HMPREF0628_0117 [Peptoniphilus lacrimalis 315-B]
 gi|281298227|gb|EFA90678.1| hypothetical protein HMPREF0628_0117 [Peptoniphilus lacrimalis 315-B]
          Length = 858

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 84/259 (32%), Gaps = 30/259 (11%)

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
             + R++S ++    +         R+ K++      K+ D    G+++H I+    K R 
Sbjct: 599  LENRSFSATDFDSYVKSGRDFLIERVFKIEEYEDSFKEVDYLKDGSIYHKILENYFKNRK 658

Query: 825  NKNTPEINHLMKQIID---SHFEKENLPPHIDII-WRHLFHKISHSFLEHEEKI-QSSIE 879
              +   + +L+ +      S  E  +       I        I  +  + +         
Sbjct: 659  VYDEDYLKNLIMKETFPKCSKVEDLSFSEKFKFIKDFSYLLDIVRA--DTDANRINKDFI 716

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT--GDNPKKETAQKLIDPQL 937
                       I    I+L G  DRID      + I DYK+                 Q 
Sbjct: 717  PKLFEQRFSFDI--GPINLVGSIDRIDAKDDEEILI-DYKSSNSSTRTASDVFNNKSFQS 773

Query: 938  SLEAAALKAGSFSQIDCRKVANLFY----------IRLKQK--FKIDCITNDKKKYSADE 985
             + A A       +   +K+A  +Y          I + +K   K D     K     +E
Sbjct: 774  VIYALA------RKNKDKKIAGFYYKIIKNFKNVPIFVNEKYIDKYDKGRFYKSDDEINE 827

Query: 986  LSEKSLKNLIEIVTLLQNG 1004
            L + S   +IE+   + +G
Sbjct: 828  LLDNSTNKIIELYKDMCDG 846


>gi|308049020|ref|YP_003912586.1| exodeoxyribonuclease V, beta subunit [Ferrimonas balearica DSM 9799]
 gi|307631210|gb|ADN75512.1| exodeoxyribonuclease V, beta subunit [Ferrimonas balearica DSM 9799]
          Length = 1218

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 83/892 (9%), Positives = 203/892 (22%), Gaps = 83/892 (9%)

Query: 179  MWWLL---AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
              W+    AA+  + A   + + + +L  +    ++    +  +    +      +I   
Sbjct: 335  AHWVAHRVAAEKRRRAQLDFDDLIKDLGKALEQEHRAGGDKLASAIRHQFPVA--LIDEF 392

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
              + P   RL   +        +L   D       +      +      +T    +   +
Sbjct: 393  QDTDPVQYRLFQRLYLAQEDTALLMIGDPKQAIYGFRGADIHTYLKARRDTEGRHYTLDT 452

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN---- 351
              +    +      V  LG    +                          ++ +P     
Sbjct: 453  NYRSTQQMVDAANAVFALGERHPDGPFLHGESIPFLPVAANGRKEVLMDGDSPVPAMTFW 512

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
              +      L + +    +A + A  +   L+   K       D   +     ++     
Sbjct: 513  WDEGDEGEVLSKGEYVSRQAQACAEEITRLLNGAAKGDVGFDRDGERSPLAAADIAILVR 572

Query: 412  NIDISA--GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            +   ++     LS     S+  S  +++F   +  A+  +++          K       
Sbjct: 573  DFREASAVRDALSERGVRSVYLSDKDSVFSSEEAEALQRILQAVALPSERAIKAALATAV 632

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                 A     N  ++   + L   R                  +    +   L+ H   
Sbjct: 633  LGFSWAALDAFNHDELAWERELAQFRELKL----------CWQRQGVLPMIRRLLAHYGV 682

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                L   +  +      L +++  +     L                   G        
Sbjct: 683  AQRALADPRYGERRLTNLLHLAELLQGASAQLDGELALIRFLAEQREDSTLGDEQVLRLE 742

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL-GTLESRLLNFDTLILGG 648
               E    I  +  + ++     +       +      +        ++ L F+      
Sbjct: 743  SDAELVKVITIHKSKGLEYPLVFLPFIAGYREASDRGGVLFYRDADGNKSLTFEADDDAR 802

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
                              + +           +  +                  L     
Sbjct: 803  AAADRERLEEDLRLLYVALTRPRHGCFLGLAPVKLSRRGKRGEPDIHRSALGCLLGAGEA 862

Query: 709  -PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                  R     L            +     L  T           Y+R    P   A  
Sbjct: 863  LEPATIRAALEALAQHPGVVLATPPEPTGTLLLATETEQALVPPKPYQRQLQRPWWIASY 922

Query: 768  RTY--SFSEIKQLINDPYAVY------ARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                   S    L   P  +       A    +   +   +       +G +    + +L
Sbjct: 923  SALLTGMSADHSLSGLPERLMEVQDETAPVQAQPQELEPAEGSIHAFPKGAMPGTFLHDL 982

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK------ 873
             +    +          +I  +    E         ++     +   F +          
Sbjct: 983  FEWAALQGQARYGAGFAKIDRAQLAAELSSRCERHGYQDHTEVLLAWFEQALALPLELPT 1042

Query: 874  ---IQSSIEKIFVNIPAKMAIESIGIH---------------------------LTGFAD 903
                 S ++++   +   +A++ + +                            L GF D
Sbjct: 1043 GTVSLSGLDQVQAEMEFWLAVDQLDVVELDQWVRASVWPGEPRPQLRPNQVNGMLKGFID 1102

Query: 904  RIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
               L + G   + DYK+            D  ++   +   D Q  L   AL     +++
Sbjct: 1103 LTFLHE-GRYYVADYKSNYLGADERAYTVDAMREAMLEHRYDLQAVLYTLALHRLLSARL 1161

Query: 953  D----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
                  R +    Y+ L+                + +L E+       +   
Sbjct: 1162 PDYDFDRHIGGGLYLFLRGMSHEHPGHGVVTVPVSRQLIEQLDARFRGVAAE 1213


>gi|50955506|ref|YP_062794.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951988|gb|AAT89689.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 833

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 71/700 (10%), Positives = 165/700 (23%), Gaps = 109/700 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-- 102
           + +     T +A  E+R    ++ G ++  +  I +           +            
Sbjct: 94  SEILAITFTNKAANEMRERVEQLLGGRAQGM-WISTFHSACVRILRREAETIGKTQSFTI 152

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN----------L 152
             +      L R++                     L     +    A++           
Sbjct: 153 YDSGDSRALLKRIVKELDADTLGFTVAATGGRISKLKNELTDIEAFARSTNLSDPKEVMF 212

Query: 153 ADIIDIIETEEK-----KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            +I      E +      ++DL A     +  +  +AA    +    +   LV+    + 
Sbjct: 213 VEIFRQYTRELRRANAFDFDDLIAETVYLFRAFPKVAA----LYQSRFRHILVDEYQDTN 268

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                 +              P I            +L   V   P  A +    D    
Sbjct: 269 HAQYALIREL------TMPIAPDIADELESYGRNIGKLRDAVGVVP-SASLTVVGDSDQS 321

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +     ++      +                            G     +       
Sbjct: 322 IYAFRGADIRNIVEFERDFP--------------------------GAKVVLLEQNYRST 355

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--N 385
                  +     N D  + K+         +      +  +EA  +A  +     +  +
Sbjct: 356 QNILSAANAVIANNFDRKDKKLWTAVGDGEKIVGYTGYSGHDEAQFVADEIEKLHSDGMD 415

Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
            K  A+        R ++    R  +   +  G             + L  +    D +A
Sbjct: 416 YKDIAVFYRTNAQTRALEEIFIRSALPYKVMGGTKFYERAEIKDAMAYLITVANPADMLA 475

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           +  ++  P    G   +    +      V  R        + L   V   I         
Sbjct: 476 LRRILNTPKRGIGPATETQLASYAVDNGVTFRDAMRDAGSLGLGPKVTAAI--------- 526

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                                    ++ L+   T K         +      +  L    
Sbjct: 527 -----------------------VQLSGLLDEATAKADPANPAGAAAVADTLMFLLDGSG 563

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
             E  +      +E           +    +    +    +D +T +          + S
Sbjct: 564 YLEVLRNSRDPQDEARAENVEELVAVTREFARNNPDG-TLVDFLTEVSLVAAADEIDDSS 622

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++ ++    ++ L +D + L G+ E         +    R+  ++      E+      
Sbjct: 623 GSVSLMTLHTAKGLEYDAVFLTGIEE---------DLLPHRMSANEPGGPAEER-----R 668

Query: 686 HDFEMANGTRH-----LIYTRSLRENNIPTIASRWLQRLL 720
             +      +      L  TR+        + SR+LQ + 
Sbjct: 669 LFYVGITRAKKRLFLSLAMTRAQFGETAVAMPSRYLQEIP 708


>gi|325131981|gb|EGC54680.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis M6190]
 gi|325137812|gb|EGC60387.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis ES14902]
          Length = 1204

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 89/928 (9%), Positives = 220/928 (23%), Gaps = 111/928 (11%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII-ETEEKKWEDLHALK 173
            L      +L  +  D             A      + LAD    +   EE +   +  L+
Sbjct: 291  LEAKLHERLLKLASDKLEAGLKKGKTPDAAVFAELQKLADFRRDLDALEEAEEATIIRLQ 350

Query: 174  NEKYGMWWLLAADFL--KIASKYWTERLVE-LNASSPVGYQIALMRAEAEHLMKGTKGPI 230
                  +   +   +      + + + L++   A +   +   L RA AE+         
Sbjct: 351  L-DLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAENWETA----- 404

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT--EKSTNITSSNTTY 288
            +I     + P    +   +        +    D       +              +   Y
Sbjct: 405  LIDEFQDTDPLQYEIFQKIF-IAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRY 463

Query: 289  STHPQYSLAKLL-------DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            +    Y     L         L  +   ++ +G            +S          +  
Sbjct: 464  TLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPERPAVQVRWLHE 523

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
             D  +     +++  +D    E  +   EA    +  +    ++   + L+         
Sbjct: 524  NDNEKANKDVLRRRAADYCADEIAHALNEAAECRLNFKGCPLQSGDIAVLVRTHNEAVMV 583

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                  R   ++ +S    +  +  ++ L++L+    +      +  ++   +  +   +
Sbjct: 584  SAALKKRQVQSVLLS-RESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSGIFGYDAQQ 642

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                           +         +     LD          +  +      E + L+ 
Sbjct: 643  L----------HDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLLSR 692

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                 +      L              ++  W +  ++   N   D           E  
Sbjct: 693  NNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNSGDNRAIR-----LESD 747

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--TVKPKIEKSSTLFILGTLESRLL 639
            + L  + +     G         +          +   +     ++  L      E    
Sbjct: 748  EDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQLSEDEQK 807

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
             +    +      ++   T     L+  + +  +  TA+  +            +R  + 
Sbjct: 808  QYADEEMAERLRLLYVALTRAEEQLN--IYAAYSSDTADNPLAYLIEGLPQ--DSRETVR 863

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
                RE +   +  R  +RL             +       +      T +      P+ 
Sbjct: 864  QTYDREKDGIAMLKRNWRRLTDNAPAGTDFAFTEDAPPPAAYRGNAGQTAEFAANSIPER 923

Query: 760  FPPLEAQPRTYSFSEIKQ------LINDPYAVYARRILKLDFIPHFKKD--------PDR 805
                       + S   Q          P    A   +                   P  
Sbjct: 924  RFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPSETPTASDGISIHDFPKG 983

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH------- 858
            T  G   H I+ +    +  +       L+   +  +  +E   P +  +          
Sbjct: 984  TQAGLCLHEILEDF---KFGQAAAGQETLIADKLKKYGFEEIWLPAVAEMAEACRKTPLT 1040

Query: 859  --------------------------LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                                         ++   F   +      + +          ++
Sbjct: 1041 GAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDI-RLPEVCRAAAE-----TLD 1094

Query: 893  SIGIH--LTGFADRIDLLKSGFVDITDYK-----------TGDNPKKETAQKLIDPQLSL 939
               ++  L GF D +     G + + DYK           T     +  A      Q  +
Sbjct: 1095 FHTVNGFLNGFIDMVCQDPDGNICVIDYKSNHLGADASAYTQQAMDEAVAHHHYYLQALI 1154

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQ 967
             A A       +       ++ Y+ L+ 
Sbjct: 1155 YAVAAARYFKLRGQPPAAVSVRYLFLRG 1182


>gi|157311096|ref|YP_001469091.1| gp092 [Lactococcus phage KSY1]
 gi|108861436|gb|ABG21635.1| gp092 [Lactococcus phage KSY1]
          Length = 376

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 60/161 (37%), Gaps = 22/161 (13%)

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
            + +S SE+     +P+  +   ++ +       +      RGT  H ++ ++ ++    
Sbjct: 1   MKPFSVSEVNTYTANPFKHFITYVMGMWP-----EQSQAAARGTSVHALLEKVSQRF--- 52

Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI-------E 879
            T +   +  +I +     +    ++ ++      +    +   +  I  ++       +
Sbjct: 53  -TEDSLEVFNEIAEELELDKKAEDYVTVL------RYLKYYSHPDTSIFKNLYSLPWAND 105

Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
            + V    K+ +   G    GF D +   + G V + DYKT
Sbjct: 106 CVKVETELKVIVPMDGFTFKGFIDLVVHHEDGSVTLYDYKT 146


>gi|291562492|emb|CBL41308.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [butyrate-producing
           bacterium SS3/4]
          Length = 656

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 81/670 (12%), Positives = 170/670 (25%), Gaps = 131/670 (19%)

Query: 387 KKSALITADRNLA-RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
           K   ++    +         L   GI     +     T +    + ++L  I      + 
Sbjct: 17  KDIVILLRSLSGWSEEFLSVLGAAGIPAYADSRTGYFTAVEVETVLNMLALIDNPMQDIP 76

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           +A ++K P+      E        A         ++      +K  +     ++++    
Sbjct: 77  LAGVLKSPIGGMKDRE---LAIVMAEFKKNPDRGEDVGFYGAVKRYLEKHGESEEDAVIY 133

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                                    +       T        L +S      +  L    
Sbjct: 134 RK-----------------------LAAFQNLLTTLREESMYLPVSRLIYR-IFDLTGYD 169

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG-ETVKPKIEK 624
                       +     L        +T      + I +I+ + +            E 
Sbjct: 170 KYAAAMPAGKTRQANLAMLVQKAEDYEKTSYQGLFDFIRYIEKLKKYNTDFGEASRSGEH 229

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI--- 681
              + I+   +S+ L F  + L G  +    ++      +   +    +    EK +   
Sbjct: 230 DDAVRIMSIHKSKGLEFPVVFLAGCGKKFNRQDARGRILIDEELGIAADFFDPEKKVKAP 289

Query: 682 -----------------GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
                             +    +      +  +   +        + S+  +   +  G
Sbjct: 290 TLKKNVLARRSNLENMGEELRILYVAMTRAKEKLIITA----GDKYMDSKLEKWGGIPAG 345

Query: 725 TDFFDNLKKRGQCYLDWTR------------------------------------KLDYT 748
                 +      YLDW                                      +L+  
Sbjct: 346 GALPFTILSAASSYLDWILMASSGAKNTLDVKNVPVKELLVEEAKNQEEKAKIYLELEQL 405

Query: 749 TKQPHYKRPK------PFPPLEAQPRTYSFSEIK---QLINDPYAVYARRILKLDFIPHF 799
            K+   + P       P+    A     S SE+K   Q ++D  + +  + ++       
Sbjct: 406 RKEQPEEIPGLIGVKYPYAADLALHAKMSVSELKEQGQFVDDAESAFLIKNVREKEDSEI 465

Query: 800 KKDPD------------RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                             +DRGT +H  +  +    I+    +I   + +I +    K  
Sbjct: 466 IDKVSDTAAEEKARIKRASDRGTAYHRALELIHFAEISGY-DDIVKELDRIREE---KRM 521

Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG---------IHL 898
               ID+++  +  K  HS +    K      K+       + I +           I L
Sbjct: 522 QETAIDMVYPGVLMKFFHSDIAARMKQADRNGKLRKESQFVVGIPAREMNKADSDALILL 581

Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLEAAALKAGSFSQIDCRK 956
            G  D       G + + DYKT    +            QL   A      + +QI  +K
Sbjct: 582 QGIIDAWFEEDDG-LVLVDYKTDRVKEDGENILLDRYQIQLFYYA-----KALAQITGKK 635

Query: 957 VANLFYIRLK 966
           V       L 
Sbjct: 636 VKEAVIYSLA 645


>gi|220908006|ref|YP_002483317.1| hypothetical protein Cyan7425_2601 [Cyanothece sp. PCC 7425]
 gi|219864617|gb|ACL44956.1| conserved hypothetical protein [Cyanothece sp. PCC 7425]
          Length = 263

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 75/231 (32%), Gaps = 21/231 (9%)

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
              S ++++         Y R   ++     F         GT  H  + ++       +
Sbjct: 3   YPLSATKLQTYGRCAQQFYYRYERRVPAPSSF----GSAALGTALHRTLRKVHGDWHYND 58

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN--I 885
                  ++       +  +L    + +      KI   + +     +     + +   I
Sbjct: 59  PFIPWPWVETCWGEFCQDLSLEQRSEGL------KILGLYTKTHLA-EPMHRPLALEGRI 111

Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
            A++    +   ++G  DRI+ L  G + + DYK+  +P        +D Q+ L   AL+
Sbjct: 112 DAELLFHHVPFKVSGRYDRIEYLDGGKLHLIDYKSAKDPAPVE---GLDLQIGLYYLALE 168

Query: 946 AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
               + +     A +  + L+    +      + +    EL     + L  
Sbjct: 169 QRYHAAL-----ARMSLLFLRTGELVSYEATLEHRQQVLELISDLAQRLHN 214


>gi|313827476|gb|EFS65190.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL063PA2]
 gi|315109407|gb|EFT81383.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL030PA2]
          Length = 1078

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 84/897 (9%), Positives = 216/897 (24%), Gaps = 162/897 (18%)

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +       A   +    G +++     + P    ++         + +    D     
Sbjct: 234  ALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQWEILRRA--FHGHSNLWLIGDPKQSI 291

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +      +    + + ++  H           LD+     K +    N ++  + +  
Sbjct: 292  YAFRGADIHAYQDAAQSASHVLH-----------LDVNYRTDKPIVEAVNTLFSNAQLGH 340

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDEN 385
               +   T+  + + I        +        +  ++A    +   + +          
Sbjct: 341  DISMELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQAPAGAQLNTATSDQ-------- 392

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                       +L  +V + L    +  D     PL  T  + ++ +         +   
Sbjct: 393  -------FVTEDLVNQVIMMLEGGTVVQDGDGLRPLRPTDIAILVRTRRR----GAELAT 441

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              +    P    G    + S+A                D++ L   + +     +    +
Sbjct: 442  ALSQAHQPAVFSGASPVWSSQAA--------------EDLITLLEALENTDERLRTRLCL 487

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                     +       +   +   +    +  T         +      + V  +    
Sbjct: 488  SDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAALHRPGVLVRLVSM-- 545

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                R + +L    +   +++   ++  T +        WI    +L   +  +      
Sbjct: 546  AGGERYVTDLRQVAQKAHIAACEGRLTATATAA------WIREQQQLAGDDEPRRLDSDQ 599

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------- 672
              + I+   E++ L F  ++L  +  G  PK +   P +    Q  +             
Sbjct: 600  QAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLDISSQGTDRSIA 659

Query: 673  -NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGT----- 725
                  ++        +      R  +              A + L  +    G      
Sbjct: 660  IESHEEDERGENLRLLYVALTRARSAVRLWWSPCPLRHRWSAFQRLVEMDRTTGELGSGV 719

Query: 726  --------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                     + ++            + L  +          P          ++ +    
Sbjct: 720  AGTDPGTLPWLNSGPIATVIAPANQKLLTRSVSAQPRACVVPRTLTRPLDTAFARTSYSG 779

Query: 778  LINDPYAVYARRILKLDFIPHFKKD------------PDRTDRGTLFHNIITEL------ 819
            L  + +A  +  +           +            P  T  GTL H ++  +      
Sbjct: 780  LTANLHAAVSEPMTDGLIDEPVDDETVDDTAPGLCGLPGGTSFGTLVHTVLEYIDTAAID 839

Query: 820  --------------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKIS 864
                          +    +    E+   ++Q++ S          +          +++
Sbjct: 840  LSSEVLSITRRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMN 899

Query: 865  HSFLEHEEKIQSSIEKIFV------------------NIPAKMAIESIGIH--LTGFADR 904
                  +    +++  +                     I A +      +   LTG  D 
Sbjct: 900  FELAMAQSGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDA 959

Query: 905  IDLLKSGFVDITDYKTGDNPKKETA---------------QKLIDPQLSLEAAALKAGSF 949
            +     G   + DYKT   P                          Q  L +AAL     
Sbjct: 960  VLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRTMMFSSHYPLQGLLYSAALHRFLA 1019

Query: 950  SQIDCRKVA------NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNLIEI 997
            S +     A         ++R      +         ++     EL E   + L  +
Sbjct: 1020 SSLPGYDPATHLGPIGYLFVRGMADRPVPDGDMPDGVFTWHPRPELIEAISERLGGL 1076


>gi|254292798|ref|YP_003058821.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
 gi|254041329|gb|ACT58124.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
          Length = 793

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 79/725 (10%), Positives = 174/725 (24%), Gaps = 116/725 (16%)

Query: 28  GTLVENFRYDPLNPLLLASVTI-YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86
             L     +        AS T+    T +A +E+R    ++ G ++  L  + +   V  
Sbjct: 61  RVLTTRLAHILNQRKAWASQTLTVTFTNKAAREMRERAEKLIGDEAQSLSWLGTFHSVSS 120

Query: 87  EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
           +       +   L    + I    +L RL+           K   P              
Sbjct: 121 KILRRHAEI-VGLESNFTIIDTDDQL-RLLKQIIEAENIDTKRWTPRFM----------- 167

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
                 A +ID  +      + + A                ++I    +  RL  LNA  
Sbjct: 168 ------AGLIDGWKNRAVTPDKVPA-----GEGHEFANGRGIEIYKT-YQHRLRVLNACD 215

Query: 207 PVGYQIALMRAEAEHLMKG-----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                +  +    +              I++     +  A    +  +A        +  
Sbjct: 216 FGDLLMHCIAIFQKSPDILADYHKRFKYILVDEYQDTNVAQYLWLRLLAQGTGNICCV-- 273

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            D       W      +      +      P   + +L        + +    ++     
Sbjct: 274 GDDDQSIYGWRGAEVDNILRFEKDF-----PGAKVIRLERNYRSTAKILACASHLITANQ 328

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            R                     L   +    +    V +    +   EA  I   +   
Sbjct: 329 DR---------------------LGKTLHTEDEDGDAVKVRGLWDGEAEARLIGEDIESW 367

Query: 382 LDENKKKS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               +K +  A++       R  +      GI   +  G             + L  I  
Sbjct: 368 RSSGRKYAECAVMVRASWQMRLFEERFIMLGIPYKVIGGPRFFERAEIRDAMAYLRLIRS 427

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
            ND +A   +V  P    G                                 +       
Sbjct: 428 ENDDLAFERVVNQPKRGVGATSI---------------------------QKIQVVAREM 460

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
           +    V         E +  A   +      +  L  ++           +      +  
Sbjct: 461 ERPLTVTAEIMLRGNEIRGKAQTGIRA---FLNDLERWRAQAREMEHPRIMEIILDESGY 517

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                     +    L              +++      + +   +++ +  ++D     
Sbjct: 518 TAMLKADKTPQAQTRLE----------NLKELVRAMGEFE-SLNAFMEHVELVMDAS--- 563

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
              E    + IL    ++ L +  + L G  E V+P   A +         +  +K+ E+
Sbjct: 564 QGNESDDQVQILTLHGAKGLEWPQVFLPGWEEEVFPSKRAID---------EGGIKSLEE 614

Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
               A      A    ++ +  +          + SR++  L         +        
Sbjct: 615 ERRLAYVGITRARERCYISFVANRMIFGRWQSVMPSRFVDELPPEHVDAVSETGYSAAPD 674

Query: 738 YLDWT 742
            L+  
Sbjct: 675 GLNSA 679


>gi|294786537|ref|ZP_06751791.1| UvrD/REP helicase subfamily [Parascardovia denticolens F0305]
 gi|315226115|ref|ZP_07867903.1| UvrD/REP helicase subfamily [Parascardovia denticolens DSM 10105]
 gi|294485370|gb|EFG33004.1| UvrD/REP helicase subfamily [Parascardovia denticolens F0305]
 gi|315120247|gb|EFT83379.1| UvrD/REP helicase subfamily [Parascardovia denticolens DSM 10105]
          Length = 1674

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/559 (10%), Positives = 147/559 (26%), Gaps = 96/559 (17%)

Query: 183 LAADFLKIASKYWTERLVELNAS-----SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
              + L      + +   +         +   +++           +     + +     
Sbjct: 307 RRREMLVDFVLAYDQAKKDQGLVEFSDFTIGAFRLVAHYPWICQEFRQKYSHVFLDEYQD 366

Query: 238 SIPATARLMSTVANHPN--------------GAIVLPGLDCHIPTAIWNTITEKSTNITS 283
           +    A+L++ + + P                + V    D       W   +  +  +  
Sbjct: 367 TSTTQAKLLNALFHKPLRPGEGTRPAGAQDLVSFVTAVGDPFQSIYAWRGASPGAFAMFL 426

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +              +  +   R +   + + +N +       +   L    + +R   
Sbjct: 427 DDYGMEE-------SQIHKMTYTRRNPAIILDAANRLTAGMRRPAPDPLGRTATSVRKEV 479

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--------------- 388
            +E   P   K  + + L+      +EA  IA   + ++   + +               
Sbjct: 480 PVEKLEPTDPKEEAVLGLMAYKTMDQEADGIARFAKEAIARARDRVQRRKRTAESSGEPM 539

Query: 389 -------------SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                         AL+   +         LTR G+   +     L  +  +  L +LL 
Sbjct: 540 SQTDYQRELNKTHVALLLRSKRHMDSYLQGLTRQGLTYQVVGDQSLWESPGAQDLLALLT 599

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL-----RGNKNSYDIMDLKS 490
            +    D  A+  L+  P       +  +  A              R         DL  
Sbjct: 600 VVTDHTDSSALLRLLATPRFGLAKKDLIVLAALAKKADQKYKDSAVRTLLGLEGDGDLPP 659

Query: 491 LVLDRIATQKN-----------------NTHVPHWQSRLSEEDKELAV-----------L 522
            V  R+   K                        ++S LS +                  
Sbjct: 660 QVRTRVEELKACLPTGVYLTDLLTDGDLLESSSPFRSGLSPQALSRLRKASVVIMTVKNR 719

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
           L   + + +       T    +    +I    +       +    E   +P         
Sbjct: 720 LDQPMEEILQTAARALTLDVDSAVGQAIKAGIRAGKRETDDQASWEPGFVPVSCLPAFLS 779

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITR------LIDGETVKPKIEKSSTLFILGTLES 636
              +   +I E      A+   ++  +        +    +++ +      + ++   ++
Sbjct: 780 LAQTYHQEIAE---GQTASIQGFVAWLNANKENPGVDSPVSLEQEDGPQPDVVVMTIHQA 836

Query: 637 RLLNFDTLILGGLNEGVWP 655
           + L +D + +GG+ EGV+P
Sbjct: 837 KGLQWDAVAVGGMVEGVFP 855



 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 92/786 (11%), Positives = 204/786 (25%), Gaps = 74/786 (9%)

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG---------NVSNEMY 321
            W  + E                 Y L +          D    G         +      
Sbjct: 889  WGLLDEDFLADLVQADADDG---YRLREDPAGRQALARDGAEWGRIKAVRQYKDPVYSAE 945

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE---ADNEREEAISIAI-- 376
             +S V + + +P      ++         ++   F+DV  +E    D+E  +A+S A   
Sbjct: 946  AQSWVFTPTAVPTPVRADKSLLPAFPDASHLAGAFADVDSLEKALTDDETSQAVSTAETR 1005

Query: 377  -ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              LR     +++++AL    R  A   + EL R         G   S T +   +   ++
Sbjct: 1006 IRLRKKGASDRQETALDYLLRAAAEGDQKELDRLLTPQRTKTGKEKSATGNLIQIKKKIS 1065

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
                      +  + K P++      + L   +  L  VA    +    +   +S V   
Sbjct: 1066 LALGELYSPGLEPVSKRPMSLRSQTGQALLDDERRLAYVAFTRAEYDLFLTTYESAVNKV 1125

Query: 496  IATQKNNTH------VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
                 ++ H                     A    +  +  + P        +       
Sbjct: 1126 DDRLYDSVHFTTVSDALQLGLIDPPAAGGGARAQEEGRVPAVDPGRKRAWLDSQAMDLRR 1185

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
             +      +         E      +  +    +L    + +   G  +      + D +
Sbjct: 1186 FAS--DFWLELFGAYSRLEQEDPVLVVADTSSLSLPQQDACVRPVGFFLGLEGPRFRDQV 1243

Query: 610  TRLIDGETVKPKIEKSSTLFIL--GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                  ++++ ++     L+ +   +L   +L     ++      V     + +      
Sbjct: 1244 VGEALQDSLRSQVVDRPLLWPMRQDSLTDYVLESSARMVRAARGRVQEMGLSASADQPDS 1303

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
               +         +             +  + TR+ R +      S ++      G  + 
Sbjct: 1304 SPGEAGSGLVADSVPLTGGTLTDGPLAQAALRTRAWRRS------SSFVPGQEGRGSGES 1357

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHY----KRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
              +           T  L   T            +     +++       + K  I    
Sbjct: 1358 SFSSLASSSFADYLTNGLVNVTAIQKEFSHQLEEESQEDGKSKKTKGKADKTKMAIGKAA 1417

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL---------------IKKRINKNT 828
            +  +    +  + P  +   D    GT FH    E                  + +    
Sbjct: 1418 SSASAPAAEAYYRPMPQATSDLAQAGTDFHAWAQEFILPASLSSSAGRRVDFGEILTLRQ 1477

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
             +   +  +        E      D+           + +      + +     V     
Sbjct: 1478 RQKEEVELECAAQTGRGEGAEEVADLSPSPRMTAWKKNLIHSVWASRPAF---AVEQSIT 1534

Query: 889  MAIE---SIGIHLTGFADRIDL----LKS--GFVDITDYKTGDNPKKE-TAQKLIDPQLS 938
              IE       H  G  D +               I D+KTG  P      ++ +  QL 
Sbjct: 1535 DTIEDGRGGRHHFRGSLDAVFYGSLDDPDKPETFTIVDWKTGHKPTDPGQVKEKLA-QLD 1593

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
            +            ID    A L+Y+  K+K     +   + +   +E    +      +V
Sbjct: 1594 IYRLMFSDLMGIDIDSID-AELYYVGEKRKEDRAIVCPHRSRRRIEEALTAA------LV 1646

Query: 999  TLLQNG 1004
              ++ G
Sbjct: 1647 ARIRQG 1652


>gi|226360934|ref|YP_002778712.1| exodeoxyribonuclease V gamma chain [Rhodococcus opacus B4]
 gi|226239419|dbj|BAH49767.1| exodeoxyribonuclease V gamma chain [Rhodococcus opacus B4]
          Length = 1089

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 96/869 (11%), Positives = 222/869 (25%), Gaps = 64/869 (7%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK------SLGDVVEEKFTADLLL 95
              A   + VP K   + L        G +  +   +       S   +V+E   A   +
Sbjct: 27  DPFAREIVAVPAKGVERWLTQRLSTALGARPGVGDGVAANIDFPSPARLVDECLAAATGV 86

Query: 96  SYNLNPPVSNIQRLLELA----RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
           S + +P   +      LA     L   W   L   +    P S       P      A +
Sbjct: 87  SADDDPWHPSRVLWALLAVVDDCLDEPWCAVLAKHLGHCRPGSDPDDHR-PGRRYATALH 145

Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA-DFLKIASKYWTERLVELNASSPVGY 210
           L D+      +    E L      +       +  D L   ++ W      +   +P   
Sbjct: 146 LTDLYRSYAAQR--PEMLVDWAAGRDTDGAGGSLDDDLLWQAELWRRLRARIGGPAPAER 203

Query: 211 QIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +   R   E  +    G + + G T        +++ +A + +  + LP     + ++
Sbjct: 204 LDSACARLREEPDLVELPGRLSLFGPTRLATDQLAVIAALAVNRDVHLWLPHPSPALWSS 263

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
           +       +     +  + +     SLA+ +  L+ +   +               ++ +
Sbjct: 264 LSTAGGVLARADDRTALSVTHLLLSSLARDVRELESRLTRLDVDDLHHPGPPPPDSLLGR 323

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---- 385
                                +     + V +        +   +   L    +++    
Sbjct: 324 LQADV--------RDDRAPALSECTADASVQVHACHGPARQVEVLRECLLHLFEDDPTLE 375

Query: 386 KKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHS-SILTSLLNAI 437
            +   ++  D      +                     A   L  T    ++++SLL   
Sbjct: 376 PRDVLVMCPDVESYAPLIRAAFGQDVLGHPGHRLRVRLADRALHQTNPVLAVVSSLLELA 435

Query: 438 FKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                   I  L          +FG  +    R                     L     
Sbjct: 436 DARVTASQILDLSAAAPVRRRFRFGDDDLERIREWATATGARWGIGPRQRAAFGLGDFPQ 495

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLL-------VDHILQCITPLVTYKTNKNSTCG 546
           +   T  +   +         E   LA+ L       +D   +    +           G
Sbjct: 496 NTFTTALDRILLGAAADESEGEWLALALPLDDVDSNDIDLTGRLAEFVDRLDVALRGLAG 555

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
             S++ W+      L  +          L                +E G        +  
Sbjct: 556 PQSVAAWSSALTRALDLLVDVSAGDTWQL------AQARRELGAAMEHGGDTVLRLSDVR 609

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            ++   + G   +        L +   +  R +    ++L GL++ V+P+  + +     
Sbjct: 610 AMLATRLAGRPTRANFRTGE-LTVCTMVPMRSVPHRVVVLLGLDDEVFPRGASVDGDDVL 668

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
                +  +       Q   D  M + +  L+   +  +          + R   +  ++
Sbjct: 669 ARNPLIGERDPRSEDRQLLLDAVM-SASEKLLLFYTGAD------PVTGMSRPPAIPLSE 721

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
             D +               +  +    +  +P  P        + +   Q   +P   +
Sbjct: 722 LLDAVAATAGSDALPAIVTRHPLQPFDARNFRPEHPFSFDRAALAGARAAQYPPEPEPAF 781

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
               L            D      L H      +++R+    P+ +  +   +D   +  
Sbjct: 782 LPAPLGPPQRGDVVDLADLVAF--LVHPT-QAFLRQRLGLRVPDEDEDLADALDVAPDPL 838

Query: 847 NLPPHIDIIWRHLFHKISHS-FLEHEEKI 874
                   +          + F   E + 
Sbjct: 839 ARWDLGQRMLVARLSGTEPADFRAAEWRR 867


>gi|207093266|ref|ZP_03241053.1| hypothetical protein HpylHP_10921 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 198

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 32/166 (19%)

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVN 884
           KN   +   + Q+++    +EN+ P   +       KI  +F   E++   + I+ + + 
Sbjct: 1   KNPHALEERLIQLLE---TRENITPKERLDTLIALKKI-QAFYLKEKERFKAKIKILDLE 56

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDP-- 935
              +  I+  G+   G  DRID      + + DYK              +T ++ + P  
Sbjct: 57  KSFETTIQ--GVAFKGRIDRIDKTADNEIILLDYK---FKSDLKLDNMSKTQREGLSPIE 111

Query: 936 --------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
                   Q+++ A  LK   +           F+  L++   ++ 
Sbjct: 112 IAQISTDYQMAIYAFTLKNLGYKG-----PIKAFFYDLRKGELVEE 152


>gi|76803478|ref|YP_327747.1| hypothetical protein NP6244A [Natronomonas pharaonis DSM 2160]
 gi|76559293|emb|CAI50902.2| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 307

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 78/284 (27%), Gaps = 43/284 (15%)

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP------KPFPPLEAQPR 768
           W+     +        +K      L+           P  +R          P + +   
Sbjct: 2   WVPGCGTVRHDGEELAVKIARDRVLNLATATLDGDLSPRAEREVLQVTSLTGPSIPSPSL 61

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDF-----IPHFKKDPDRTDRGTLFHNIITELIKKR 823
           ++S++ +      P   Y   ++           +      +   G LFH+   + + + 
Sbjct: 62  SHSYTSLAAYEECPRNHYLEYVVNAFPDYQETTSNTGDGVSQRTIGLLFHDTAEQAVNQG 121

Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
           + +       + +++      ++ LP            +    + E +     S E I  
Sbjct: 122 VERREEWY-GICERLASQRRAEDALPAA---------RQCIDRYFELDL---PSYEIIDA 168

Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP----QLSL 939
               ++ I+     L G+ D +       + + DYK          ++  D     QL +
Sbjct: 169 EREFELDIDGHE--LVGYIDAVYRTPDDELLVIDYK--------ATERHRDLEDNKQLPI 218

Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983
              A +      +    V    Y  + +               A
Sbjct: 219 YLLACR-----DLYDEPVTRAGYAYVGEIGPKVEARTFSDGDLA 257


>gi|328752848|gb|EGF66464.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL025PA2]
          Length = 1078

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 105/1086 (9%), Positives = 260/1086 (23%), Gaps = 188/1086 (17%)

Query: 44   LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-LNPP 102
            + ++ +    + A +ELR    E       +L   +   D  +             +   
Sbjct: 47   MENLLLVTFNRSAARELRGRVYERLVNTRLLLAGAREPSDPCDWSLIRCGQAGLTRVESA 106

Query: 103  VSNIQRLLELA--RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID--- 157
            + N  R +             +L  +         ++     A  +     LA  +D   
Sbjct: 107  LDNFDRAVITTTHEFASRMLVELGVLSDHDPSSVLMTDLAPLATEVSDDDYLAQYLDCDR 166

Query: 158  --------------IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                           ++  E               + W L+    +   +    R V   
Sbjct: 167  PPSVRDKRELSRDVAVKYGEVPIFSKDDADTPVQDVLWALSVR--EDVRRRSKSRSVHTF 224

Query: 204  ASSPVGYQIALMRA----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                     AL        A   +    G +++     + P    ++         + + 
Sbjct: 225  DDLIGDLVKALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQWEILRRA--FHGHSNLW 282

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
               D       +      +    + + ++  H           LD+     K +    N 
Sbjct: 283  LIGDPKQSIYAFRGADIHAYQDAAQSASHVLH-----------LDVNYRTDKPIVEAVNT 331

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ---KCFSDVALIEADNEREEAISIAI 376
            ++  + +     +   T+  + + I        +        +  ++A    +   + + 
Sbjct: 332  LFSNAQLGHDISMELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQAPAGAQLNTATSD 391

Query: 377  ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                                +L  +V + L    +  D     PL  T  + ++ +    
Sbjct: 392  Q---------------FVTEDLVNQVIMMLEGGTVVQDGDGLRPLRPTDIAILVRTRRR- 435

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                 +     +    P    G    + S+A                D++ L   + +  
Sbjct: 436  ---GAELATALSQAHQPAVFSGASPVWSSQAA--------------EDLITLLEALENTD 478

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
               +    +         +       +   +   +    +  T         +      +
Sbjct: 479  ERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAALHRPGV 538

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
             V  +        R + +L    +   +++   ++  T +        WI    +L   +
Sbjct: 539  LVRLVSM--AGGERYVTDLRQVAQKAHIAACEGRLTATATAA------WIREQQQLAGDD 590

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---- 672
              +        + I+   E++ L F  ++L  +  G  PK +   P +    Q  +    
Sbjct: 591  EPRRLDSDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLDIS 650

Query: 673  ----------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLV 721
                           ++        +      R  +              A + L  +  
Sbjct: 651  SQGTDRSIAIESHEEDERGENLRLLYVALTRARSAVRLWWSPCPLRHRWSAFQRLVEMDR 710

Query: 722  LGGT-------------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
              G               + ++            + L  +          P         
Sbjct: 711  TTGELGSGVAGTDPGTLPWLNSGPIATVIAPANQKLLTRSVSAQPRACVVPRTLTRPLDT 770

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD------------PDRTDRGTLFHNII 816
             ++ +    L  + +A  +  +           +            P  T  GTL H ++
Sbjct: 771  AFARTSYSGLTANLHAAVSEPMTDGLIDEPVDDETVDDTAPGLCGLPGGTSFGTLVHTVL 830

Query: 817  TEL--------------------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
              +                    +    +    E+   ++Q++ S          +    
Sbjct: 831  EYIDTAAIDLSSEVLSITRRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFS 890

Query: 857  -RHLFHKISHSFLEHEEKIQSSIEKIFV------------------NIPAKMAIESIGIH 897
                  +++      +    +++  +                     I A +      + 
Sbjct: 891  PADRLAEMNFELAMAQSGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALR 950

Query: 898  --LTGFADRIDLLKSGFVDITDYKTGDNPKKETA---------------QKLIDPQLSLE 940
              LTG  D +     G   + DYKT   P                          Q  L 
Sbjct: 951  GFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRTMMFSSHYPLQGLLY 1010

Query: 941  AAALKAGSFSQIDCRKVA------NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSL 991
            +AAL     S +     A         ++R      +         ++     EL E   
Sbjct: 1011 SAALHRFLASSLPGYDPATHLGPIGYLFVRGMADRPVPDGDMPDGVFTWHPRPELIEAIS 1070

Query: 992  KNLIEI 997
            + L  +
Sbjct: 1071 ERLGGL 1076


>gi|314966451|gb|EFT10550.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL082PA2]
 gi|315103760|gb|EFT75736.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL050PA2]
          Length = 1078

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 83/897 (9%), Positives = 211/897 (23%), Gaps = 162/897 (18%)

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +       A   +    G +++     + P    ++         + +    D     
Sbjct: 234  ALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQWEILRRA--FHGHSNLWLIGDPKQSI 291

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +      +    + + ++  H           LD+     K +    N ++  + +  
Sbjct: 292  YAFRGADIHAYQDAAQSASHVLH-----------LDVNYRTDKPIVEAVNTLFSNAQLGH 340

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDEN 385
               +   T+  + + I        +        +  ++A    +   + +          
Sbjct: 341  GISMELVTAHHQESRIKTATTDGPRYHWSQPFQIRCLQAPAGAQLNTATSDQ-------- 392

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                       +L  +V + L    +  D     PL     + ++ +         +   
Sbjct: 393  -------FVTEDLVNQVIMMLEGGTVVQDGDGLRPLRPNDIAILVRTRRR----GAELAT 441

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              +    P    G    + S+A   L                L   + +     +    +
Sbjct: 442  ALSQAHQPAVFSGASPVWSSQAAEDLMT--------------LLEALENTDERLRTRLCL 487

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                     +       +   +   +    +  T         ++     + V  +    
Sbjct: 488  SDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAVLHRPGVLVRLVSM-- 545

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                R + +L    +   +++   ++  T +        WI    +L   +  +      
Sbjct: 546  AGGERYVTDLRQVAQKAHIAACEGRLTATATAA------WIREQQQLAGDDEPRRLDSDQ 599

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------- 672
              + I+   E++ L F  ++L  +  G  PK +   P +    Q  +             
Sbjct: 600  QAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLDISSQGTDRSIA 659

Query: 673  -NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDN 730
                  ++        +      R  +              A + L  +    G      
Sbjct: 660  VESHEEDERGENLRLLYVALTRARSAVRLWWSPCPRRHRWSAFQRLVEMDRTTGELGLGV 719

Query: 731  LKKRGQCYLDW-------------TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                                     + L  +          P          ++ +    
Sbjct: 720  AGTDPGTLPWLNSGPIATVIAPTNQKLLTRSVSAQARACVAPRTLTRPLDTAFARTSYSG 779

Query: 778  LINDPYAVYARRILKLDFIPHFKKD------------PDRTDRGTLFHNIITEL------ 819
            L  + +A  +  +           +            P  T  GTL H ++  +      
Sbjct: 780  LTANLHAAVSESMTNNLIDEPVDDESVDDTAPGLCGLPGGTSFGTLVHTVLEYIDTAATD 839

Query: 820  --------------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKIS 864
                          +    +    E+   ++Q++ S          +          +++
Sbjct: 840  LSSEVLSITRRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMN 899

Query: 865  HSFLEHEEKIQSSIEKIFV------------------NIPAKMAIESIGIH--LTGFADR 904
                  +    +++  +                     I A +      +   LTG  D 
Sbjct: 900  FELAMTQHGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDA 959

Query: 905  IDLLKSGFVDITDYKTGDNP-------------KKETA--QKLIDPQLSLEAAALKAGSF 949
            +     G   + DYKT   P                          Q  L +AAL     
Sbjct: 960  VLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRAIMFSSHYPLQGLLYSAALHRFLA 1019

Query: 950  SQIDCRKVA------NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNLIEI 997
            S +     A         ++R      +         ++     EL E   + L  +
Sbjct: 1020 SSLPGYDPATHLGPIGYLFVRGMADRPVPDGDMPDGVFTWHPRPELIEAISEQLGGL 1076


>gi|242280176|ref|YP_002992305.1| exodeoxyribonuclease V [Desulfovibrio salexigens DSM 2638]
 gi|242123070|gb|ACS80766.1| Exodeoxyribonuclease V [Desulfovibrio salexigens DSM 2638]
          Length = 1059

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 76/732 (10%), Positives = 169/732 (23%), Gaps = 101/732 (13%)

Query: 226  TKGPIIIAGSTGSIPATARLM--STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                +++     +  A    M    +        +    D       W     +  +   
Sbjct: 367  RLHHLLVDEFQDTSLAQWNAMIPLAIECLSKRGSLFYVGDVKQAIYSWRGGRSELFDEVG 426

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT- 342
             +   S   +++ A L          +       + +    + +  +             
Sbjct: 427  QDPELSGLSEFTPANLDYNWRSLEHVIGFNNEFFDALADYDLAMDLAERLYPNGPEEQQI 486

Query: 343  ----------DILENKIPNIQKCFSD---VALIEADNERE---EAISIAIALRMSL--DE 384
                      D    ++P  Q        +  + A + +E   E       L   L    
Sbjct: 487  ELAQRISHSFDKASQQLPPNQDRIGGYVRLQRVFASSSQEIVDETRRNFDLLMEELIPRR 546

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
              +   ++      A+ V   L    I +     + L        + SLL  +    D +
Sbjct: 547  EYRDICVLVRSNGHAQLVCDWLVEKSIPVITENSLQLDRHPIVRQMVSLLKFLDYPQDDL 606

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
            A    +          +                             L        K   H
Sbjct: 607  AFLEFICGQEIFGHISDIEH------------------------DDLFKWLAERDKGPLH 642

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                                +         ++    K+       ++         ++  
Sbjct: 643  ----------------RRFSEQYPDFWNTQISPFLRKSGLMTPYDLASEMVSRFKLVETY 686

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
              DE      L      +                  +   ++D        E V P  E 
Sbjct: 687  PQDELYIRRFLEVVHLAEEKRGT-------------SLAAFLDFWELSSAEEKV-PLPES 732

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
             + + I+   +S+ L F  +++       W  +          +     L      +G  
Sbjct: 733  VNAVRIMTIHKSKGLEFPVIVVPF---HNWSVSGPDTSLADIEIDGQTMLTPMSSSLGDI 789

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
             ++      +  L                 +L      G +     ++   +   +    
Sbjct: 790  YYENRTRMFSEQLNLLYVAWTRAGQ-ELYGFLPSEKTRGVSPALAAIELILEGKFNDLGM 848

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND----PYAVYARRILKLDFIPHFK 800
            L+Y    P   +  P              +  +   D    P  +     L++       
Sbjct: 849  LEYG-ITPEDTQVLPTTNKPEYSSEEPCDDFCETDPDGLLEPELMGWLPRLRVYRHNLED 907

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
               D   RG L HN +  LI    ++         ++  ++ F K       + +     
Sbjct: 908  YSYDARMRGELAHNAMENLILTGNDEADC------RRSAEAAFAKFPAVTEEENVLVPEV 961

Query: 861  HKISHSFLEHEEKIQS--SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
              ++   L   +   +          + A+          T  AD + LL      + +Y
Sbjct: 962  TDMALWALSVPDIRAAIERGRPEVAIMDAQGE--------THRADLL-LLDDKRALVVEY 1012

Query: 919  KTGDNPKKETAQ 930
            KTG    +   Q
Sbjct: 1013 KTGQPSPENEKQ 1024


>gi|283457707|ref|YP_003362293.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133708|dbj|BAI64473.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 1594

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 73/706 (10%), Positives = 147/706 (20%), Gaps = 78/706 (11%)

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                   R  + S      + +       LE+ + + +   ++   +E       A++ A
Sbjct: 886  PWPLRGDREYLPSVLETAEEITAFEKAKDLEDYLADHKDDAAEHTGMEDRRLMYVAMTRA 945

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              L        K +A   A     +    EL           G P               
Sbjct: 946  RNLLAMSAYRWKSAA---AQPQPVQPFWEELMEMLFKSLFGMGTPTVDAPSVRF----EE 998

Query: 436  AIFKLNDFMAIATLVKH-----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             +        +  +        P  K         R        +         ++    
Sbjct: 999  TMDTPWAAPQLVGMGLSYTMPNPADKRKKVHLNHVRRWVEQLAESKYRLTEPVTLVHGTV 1058

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            +    +    +   +         +  EL     +                         
Sbjct: 1059 VDPSNLPPAPDEAALLEDLELYPVDADELTPEQAEARANARATYAEQVQGYAWALVEAMA 1118

Query: 551  SDWTKLTVTCLQNVCLDE------HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                +       +V             LP   +  E                     A  
Sbjct: 1119 PALAQDWQLAAPSVRARTVAENCTRLNLPVPEWIIEATEREKWRGAQPPQPGFSPTVAAA 1178

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
                +      +  + +      +         L           +              
Sbjct: 1179 LPIEVRGQFAQKNYEDRNPNLGAVLTAMWPFDPLERPVIWRWASDDALTQGTEAMLRRGQ 1238

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
               ++ ++ + ++ +          +          RS                    G 
Sbjct: 1239 HEQLEREIEINSSSRREAVERAALAVELAVGEDDQQRSAEATAGEGSNHPAPAASATHGE 1298

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
            +   + L+++   +      L     Q     P+  P         S S   +L  DP  
Sbjct: 1299 SAIPEPLRQQAVDWEREADLLLLMMGQTDPVLPEQLPGH------LSASTFIRLSEDPQG 1352

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII----- 839
                  +     P  ++       GT  H +I E        +  E       +      
Sbjct: 1353 -----TVHQLMRPVPQRPSRAATIGTAVHALIEEHFGVAPTADPLEAPEAEDTVGVDLPG 1407

Query: 840  ------------------------------DSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
                                             F  E+     +        ++   F  
Sbjct: 1408 SAASTSPAEPADSSDSADPSESANPADLQEQDEFTFEDDFEESESELDASVQRLWERFAT 1467

Query: 870  HEEKIQS-SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS---GFVDITDYKTGDNPK 925
             E            V  P +  IE  G+ L G  D +   +        + D+K+G  PK
Sbjct: 1468 SEWGSDEWKDRIWAVEYPVETHIE--GVSLRGRIDAVFRTEDEDGERWVLVDWKSGSRPK 1525

Query: 926  KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL--FYIRLKQKF 969
              T Q     QL L        +FS+I       +   ++ L  K 
Sbjct: 1526 MATMQS-RRFQLGLY-----RIAFSRIMGVDPERISTVFVYLGGKG 1565



 Score = 71.5 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 74/780 (9%), Positives = 177/780 (22%), Gaps = 154/780 (19%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITG---------------KKSTILPIIKSLGDVVEEKFT 90
            V     T++A  ELRS                      ++    P + +          
Sbjct: 127 EVLGVTFTRKAATELRSRMRAGLNTLRRSRRVAPSDEELREGIADPTVLTYHSYANNLVK 186

Query: 91  A-DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
              L L    +  +    +  +LA  I+ +      + KD  P S  ++           
Sbjct: 187 EYGLRLGVEQDAQMLGDAQKWQLAAQIVQYWEGELPLDKDGVPVSAATMINQMLQ----- 241

Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWW------------------LLAADFLKIA 191
                + D       + + +     E+   +                          ++ 
Sbjct: 242 -----LSDECAEHLVEPQQVIDFCTEQLAAYAAVPDPRRETKTERDIQKVQRLLRNRRVY 296

Query: 192 SK---YWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATA 243
           ++    +      +             R            +     +++     +  A  
Sbjct: 297 ARMAMSYARVKARMQVLDFGDLMRFAARIAEADPAIREGERARFKVVLLDEFQDTSHAQM 356

Query: 244 RLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY-STHPQYSLA 297
            L S++             V+   D       +   ++        +       P +   
Sbjct: 357 SLFSSIYGADEAAGIPAHPVMAVGDPKQSIYGFRGASDGQMFSFYRHFPTKHVQPLFLSI 416

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
              + + +          +                           ++        +  +
Sbjct: 417 AWRNDISVLNAANHVAEKLKEVPEWVRAADGDITAAQVPDLRPRCALVGEPGSPAFEQAA 476

Query: 358 D-----VALIEADNEREEAISIAIALR----MSLDENKK-------------------KS 389
                 V L   D++REEA++IA  +      ++ E ++                   + 
Sbjct: 477 AGMVGRVDLTYHDSDREEAVAIAERIAAMRTQAVREYERAYAAHRSGDGSVRPHLKMPEI 536

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A++         +++E  R GI +       L +      L S L  +   N   A+A L
Sbjct: 537 AVLARVHGQLDPIRVECERLGIPVQQVGLGGLLSQPEVVDLVSALRVLADPNRSDALARL 596

Query: 450 VKHPLAKFGFPEKYLS-RAKNALELVALRGNKNSYDIM-------------------DLK 489
           +     + G  +         +L     R  +    +                     L+
Sbjct: 597 LTGARWRLGAADMLALGDWAQSLVRERERALREQMALRMLAEAEDADDAAAINLQTEHLR 656

Query: 490 SLVLDRIATQKNNTHVPHWQS---------------------------RLSEEDKELAVL 522
           +       T K         +                           R S    E    
Sbjct: 657 AAQERLDETLKGAVEDSSGYASLIEAVENLPQDGADGEPLYGEQYRGRRFSRAALERLRA 716

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDW----------------TKLTVTCLQNVCL 566
             + +      L               + D                             +
Sbjct: 717 FAEQMRVLRAGLSEDLGTLLYEIERTMLLDIELAVRPGTDPLGSRANLDAFHEVAAAYGM 776

Query: 567 DEHRKLPNLWFEEEGKTLS-----SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
              R    ++   +G +       +    +   G       + W++       G  +   
Sbjct: 777 SAPRINAMIYAGSDGVSAEEGDPGARRFLLSSGGVSYVMGFLAWLERADDEEKGLALGTV 836

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
               + + ++    ++ L +D ++L GL        T     +S        L+   +Y+
Sbjct: 837 EPDPNAVQLMTMHAAKGLEWDHVLLPGLCGSATGGQTPNLWQMSANTALPWPLRGDREYL 896


>gi|192824065|ref|YP_001994527.1| gp69 [Mycobacterium phage KBG]
 gi|190610295|gb|ACE79817.1| gp69 [Mycobacterium phage KBG]
          Length = 304

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 84/291 (28%), Gaps = 62/291 (21%)

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
              + + +  S S++      P A    RI K+   P          +GT  H +    + 
Sbjct: 37   EYKYEKKPRSVSQLSSFEKCPMAYKLARIDKVWRRPAAW-----LQQGTAVHAVAEHYML 91

Query: 822  KRI--NKNTPEINHLMKQIIDSHFEK--------------------ENLPPHIDIIWRHL 859
            +R+      P       ++    +++                       P  ++  W+  
Sbjct: 92   RRLGFEPGGPMTREEAYEVFKDSYQEGISESTDVTPNLDWWFSSGPYRGPDDVERRWKIG 151

Query: 860  FHKISHSFLEH-------EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
              +     ++        E       +     I   +      I + GF D + +L  G 
Sbjct: 152  LEQ-VDKVIDWIENHPSLEVWSTPDGKPG---IELDLDFMLGDIQIRGFIDAVLIL-DGE 206

Query: 913  VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972
              + D+KTG  P         D QL++ A AL      ++    V    Y   K      
Sbjct: 207  PMVVDHKTGLKP-------GDDFQLAVYALAL-----KKLYGLDVQRGIYFMAKTGKPTY 254

Query: 973  CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
                        +L++ + + + E    ++   +           +  + +
Sbjct: 255  PY----------DLTDWTEEKITERFLAMEAKLEAGEFEPNPG-DACGRCD 294


>gi|148273735|ref|YP_001223296.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831665|emb|CAN02634.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 816

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 80/709 (11%), Positives = 169/709 (23%), Gaps = 123/709 (17%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-- 102
           + +     T +A  E+R     + G+ S  +  I +           +            
Sbjct: 83  SQILAITFTNKAAAEMRERVESLLGQASEGM-WISTFHSACVRILRREAEAFGFTQNFTI 141

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
             +    + + R+I                     L    ++A   A+  A+  D     
Sbjct: 142 YDSADSRVLIKRIIKQLDADTLGFTVSSVSGRISKLKNELSDADTFART-ANFND----- 195

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA---LMRAEA 219
                                A        + +T  L   NA            L RA  
Sbjct: 196 --------------------PAEAMFVEIFRQYTRSLASANAFDFDDLIGQTVYLFRAFP 235

Query: 220 --EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP-------------------NGAIV 258
               L +     +++     +  A   L+  +                       +GA +
Sbjct: 236 KVAALYQRRFRHVLVDEYQDTNHAQYSLIRELTRAVAPEDVPVDTRMSTNGMGGIDGASL 295

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               D       +     ++      +      PQ  +  L       +  +     V +
Sbjct: 296 TVVGDSDQSIYAFRGADIRNITEFERDF-----PQSKVVLLEQNYRSTQNILTAANAVIS 350

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
             + R                      + K+         +      +  +EA  +A  +
Sbjct: 351 NNFDRK---------------------DKKLWTSIGDGDKIVGFTGYSGHDEAQFVADEI 389

Query: 379 RMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           +   +E     + A+        R ++  L R  +   I  G             + L A
Sbjct: 390 QKLHEEGTAYSEIAVFYRTNAQTRALEEILIRSAVPYRIMGGTKFYERAEIKDAMAYLVA 449

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           +    D +A+  ++  P    G   +           V  R        + L   V   I
Sbjct: 450 VANPADVLALRRILNTPKRGIGPATETALANFAESHGVTFREAMRRASELGLGPKVTQAI 509

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                                +   LL+D          +      +      +    + 
Sbjct: 510 LAL--------------SRMLDEVALLLD--PDRPEGRTSVGDLVTTLLEKSGLVQALR- 552

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                     DE R           K  S    +        + + +   D +       
Sbjct: 553 ----ASKDAQDEARAENVEELVAVTKEFSRNNPEGQLVDFLTEVSLVAAADELDD----- 603

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
                   S T+ ++    ++ L +D++ L G+ E         +    R+  ++     
Sbjct: 604 -------SSGTVSLMTLHTAKGLEYDSVFLTGVEE---------DLLPHRMSANEPGGPA 647

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
            E+ +               L  TR+        + SR+LQ +      
Sbjct: 648 EERRLFYVGITRARRRLFISLAMTRAQFGEVNVAMPSRYLQEIPAELID 696


>gi|306821094|ref|ZP_07454710.1| ATP-dependent deoxyribonuclease subunit B [Eubacterium yurii subsp.
            margaretiae ATCC 43715]
 gi|304550787|gb|EFM38762.1| ATP-dependent deoxyribonuclease subunit B [Eubacterium yurii subsp.
            margaretiae ATCC 43715]
          Length = 1103

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 99/328 (30%), Gaps = 74/328 (22%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828
            S S+I++ +  P++ Y +    +       +  D    G + H  + E  K+ +  +   
Sbjct: 751  SISKIEKYVQCPFSYYMQY--GISPQRRVSQSIDNLKSGIVMHKYMEEFSKEILQNDLIL 808

Query: 829  -PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI------------SHSFLEHEEKIQ 875
              +    +   ++  + +  +     +I      +             + S +  ++   
Sbjct: 809  SLDTKEKVDDFVEKIYAQNIMQEDTRLIVEDSKRQYSIIKKLKKISKKATSLIIKQKTYN 868

Query: 876  SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK--SGFVD-ITDYKTGDNP-KKETAQK 931
            S    +       M   +  +   G  DRID LK        + DYK+ +     E    
Sbjct: 869  SFAT-VATEKSISMK--AGDVIYEGKVDRIDALKIGDKEYIQVIDYKSSEKDINFEDIYN 925

Query: 932  LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR--------------------------- 964
             I+ Q+      L        D      + Y                             
Sbjct: 926  GINIQMLFYLYVLT---IKNKDSNLPYAVLYFPMIDKNVLIEDEDMSNLEEKIEQTMKMR 982

Query: 965  ----------------LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
                            ++ K K   +  D +K S + +S++ +K L++ V  +    Q  
Sbjct: 983  GLLTDDINLLKAFENDIEGKSKYTDVKFDGQKLSGNVVSDEQMKKLLKKVLDIIKENQGE 1042

Query: 1009 ISH----LRLSEKSNIQSEYDHLARVAE 1032
            I       R ++ +    +Y ++ +  E
Sbjct: 1043 ILSGNIIPRPTDNACTYCDYKNICKFDE 1070


>gi|162448467|ref|YP_001610834.1| hypothetical protein sce0197 [Sorangium cellulosum 'So ce 56']
 gi|161159049|emb|CAN90354.1| hypothetical protein sce0197 [Sorangium cellulosum 'So ce 56']
          Length = 1171

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 66/501 (13%), Positives = 138/501 (27%), Gaps = 40/501 (7%)

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                       L +L    +   +    V    + ++         +   + + +T LV 
Sbjct: 580  ERATFGEWQRRLSALATRALRRPERVLAVLAELAPMAHVGPVDLGEIRLCLSRRLTDLVL 639

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                +      +S  +  +     +  V     R  P    E+     +   +       
Sbjct: 640  PPAARRDGRLFVSPIEGARGRSFDVVFVPGLAERIFPQKVTEDPILRDALRRTIAGGDSG 699

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
               ++     + +   +     + ++  S     +     R+ +F  L L    EG  P 
Sbjct: 700  LDTSDDRVARERLALRLAVGAARQRLVVSYPRVDMDQSRPRVPSFYGLELLRAAEGRLPG 759

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                     +   + +      +           A               ++P   +   
Sbjct: 760  FGELERRAEQGGAARIGWPAPARPED--------AIDAAEHDLALLETLFSLPEAQTVGT 811

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
             R L+         L+ R + ++      D    +P  +  +         R++S + ++
Sbjct: 812  ARYLLNANPHLARALRFRARRWIPGWTSAD-GLFKPIAEAREALAKHAFGRRSFSPTALQ 870

Query: 777  QLINDPYAV--YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--------K 826
                 PY    YA   L     P   ++ D   RG L H+++ E++    +         
Sbjct: 871  HFAACPYRFFLYAVHKLAPRPAPEAIEELDPLQRGRLVHDVLYEVLVALRDAGKLPLGLP 930

Query: 827  NTPEINHLMKQIIDSHFEKENLP--PHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIF 882
               E    + + +D    +      P I  +W      +     E   +       E I 
Sbjct: 931  ALDEARAELDRALDRVAARYADELAPAIRRVWDDGIASVRADLREWLRRAAEDRDWEPIH 990

Query: 883  VNIPAKMAIE---------------SIGIHLTGFADRIDLLKSGFVDITDYKTG--DNPK 925
              +   +                    G+ L G  D ++    G +  TDYKTG    P+
Sbjct: 991  FELSFGLPRRLATRDPGSSDAPVELDCGVRLRGSIDLVERSVWGAMRATDYKTGKARAPR 1050

Query: 926  KETAQKLIDPQLSLEAAALKA 946
                      Q  L A AL+ 
Sbjct: 1051 DAVVSGGGTLQPVLYALALEK 1071



 Score = 45.7 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 76/729 (10%), Positives = 177/729 (24%), Gaps = 53/729 (7%)

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
           ++L  + ++          +       + R LE  RL  +  + L     D         
Sbjct: 94  RTLDGLAQDGLLGRFARVADRPGLPRAVARTLEETRLSGVAPDALAPAELD--------- 144

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM----------------WWL 182
               A+A   A + A + D         E   A  +                      + 
Sbjct: 145 --RIAHAFDAALDDAGLADRAIVLRLAAERARAADDGDPRSRHPLLGLPMLLLDLPVRFA 202

Query: 183 LAADFLKIASKYWTERLVELNASSPV--GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
           L  + L+  +    + L  + A       +  A +R+    +              G+  
Sbjct: 203 LERELLEAIAARSPDALATVPAGDAASLRHLQAALRSPPRRVSLTAVSAAHDGAGAGNGV 262

Query: 241 ATARLMSTVANHPNGA--IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
                       P  A    L  L  H+   + +        +   +    +     LA+
Sbjct: 263 DDGADDGAGDEPPPVAPSTSLARLQEHLFDPLTDEAPGLGDEVEILSAPGESRECVELAR 322

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
           +      +    +R+  +          + ++              ++            
Sbjct: 323 IALREAARGVPFERMAILLRAPEQYRAHLVEALRRAGIPAHFAQGSVQPDPAGRALLALL 382

Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSAL-------ITADRNLARRVKLELTRFGI 411
               E  +    A  +++          +           +  D +L   +         
Sbjct: 383 ACAAEHLSASRFAEYLSLGQVPDATPAGEPPPAPPEADRWVPPDDDLFPELLRGGFDEAP 442

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
             D  AG  L         +S   A               +P       +         +
Sbjct: 443 PDDDMAGEDLGFDPPGK--SSSPAAQNPDPTAPNPDRTTPNPGRTVQSHDPTAQGPDAPV 500

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
               LR  +    I+   +++      +   +              E        I + +
Sbjct: 501 HDGTLRAPRRWERILVDAAVIGGLDRWEARLSGFERELRLSLSRAPEDRD--AARIARTL 558

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             L   +         L             + +     R L           + ++ +++
Sbjct: 559 ADLSALRAFALPLLAALPSPGERATFGEWQRRLSALATRALRRPER------VLAVLAEL 612

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                    +  E    ++R +    + P   +   LF+     +R  +FD + + GL E
Sbjct: 613 APMAHVGPVDLGEIRLCLSRRLTDLVLPPAARRDGRLFVSPIEGARGRSFDVVFVPGLAE 672

Query: 652 GVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
            ++P+   ++P L   ++      D  L T++  + +      +A G        S    
Sbjct: 673 RIFPQKVTEDPILRDALRRTIAGGDSGLDTSDDRVARERLALRLAVGAARQRLVVSYPRV 732

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
           ++     R      +         L   G+      +        P   RP+        
Sbjct: 733 DMDQSRPRVPSFYGLELLRAAEGRLPGFGELERRAEQGGAARIGWPAPARPEDAIDAAEH 792

Query: 767 PRTYSFSEI 775
                 +  
Sbjct: 793 DLALLETLF 801


>gi|314923613|gb|EFS87444.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL001PA1]
          Length = 1078

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 83/897 (9%), Positives = 210/897 (23%), Gaps = 162/897 (18%)

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +       A   +    G +++     + P    ++         + +    D     
Sbjct: 234  ALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQWEILRRA--FHGHSNLWLIGDPKQSI 291

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +      +    + + ++  H           LD+     K +    N ++  + +  
Sbjct: 292  YAFRGADIHAYQDAAQSASHVLH-----------LDVNYRTDKPIVEAVNTLFSNAQLGH 340

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDEN 385
               +   T+  + + I        +        +  ++A    +   + +          
Sbjct: 341  GISMELVTAHHQESRIKTATTDGPRYHWSQPFQIRCLQAPAGAQLNTATSDQ-------- 392

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                       +L  +V + L    +  D     PL     + ++ +         +   
Sbjct: 393  -------FVTEDLVNQVIMMLEGGTVVQDGDGLRPLRPNDIAILVRTRRR----GAELAT 441

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              +    P    G    + S+A   L                L   + +     +    +
Sbjct: 442  ALSQAHQPAVFSGASPVWSSQAAEDLMT--------------LLEALENTDERLRTRLCL 487

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                     +       +   +   +    +  T         ++     + V  +    
Sbjct: 488  SDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAVLHRPGVLVRLVSM-- 545

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                R + +L    +   +++   ++  T +        WI    +L   +  +      
Sbjct: 546  AGGERYVTDLRQVAQKAHIAACEGRLTATATAA------WIREQQQLAGDDEPRRLDSDQ 599

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------- 672
              + I+   E++ L F  ++L  +  G  PK +   P +    Q  +             
Sbjct: 600  QAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLNISSQGTDRSIA 659

Query: 673  -NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDN 730
                  ++        +      R  +              A + L  +    G      
Sbjct: 660  VESHEEDERGENLRLLYVALTRARSAVRLWWSPCPRRHRWSAFQRLVEMDRTTGELGLGV 719

Query: 731  LKKRGQCYLDW-------------TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                                     + L  +          P          ++ +    
Sbjct: 720  AGTDPGTLPWLNSGPIATVIAPTNQKLLTRSVSAQARACVAPRTLTRPLDTAFARTSYSG 779

Query: 778  LINDPYAVYARRILKLDFIPHFKKD------------PDRTDRGTLFHNIITEL------ 819
            L  + +A  +  +           +            P  T  GTL H  +  +      
Sbjct: 780  LTANLHAAVSESMTNNLIDEPVDDESVDDTAPGLCGLPGGTSFGTLVHTALEYIDTAATD 839

Query: 820  --------------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKIS 864
                          +    +    E+   ++Q++ S          +          +++
Sbjct: 840  LSSEVLSITRRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMN 899

Query: 865  HSFLEHEEKIQSSIEKIFV------------------NIPAKMAIESIGIH--LTGFADR 904
                  +    +++  +                     I A +      +   LTG  D 
Sbjct: 900  FELAMTQHGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDA 959

Query: 905  IDLLKSGFVDITDYKTGDNP-------------KKETA--QKLIDPQLSLEAAALKAGSF 949
            +     G   + DYKT   P                          Q  L +AAL     
Sbjct: 960  VLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRAIMFSSHYPLQGLLYSAALHRFLA 1019

Query: 950  SQIDCRKVA------NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNLIEI 997
            S +     A         ++R      +         ++     EL E   + L  +
Sbjct: 1020 SSLPGYDPATHLGPIGYLFVRGMADRPVPDGDMPDGVFTWHPRPELIEAISEQLGGL 1076


>gi|294341124|emb|CAZ89525.1| ATP-dependent DNA helicase [Thiomonas sp. 3As]
          Length = 669

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 73/702 (10%), Positives = 160/702 (22%), Gaps = 114/702 (16%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI-IKSLGDVVEE 87
             +       L P  +A++T    T +A  E+R    ++  K+     + I +   +   
Sbjct: 33  HKIGRLLRAGLEPDQIAAIT---FTNKAAAEMRERAAQLVDKRGVASKLAISTFHALGVR 89

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                                          +     D +  L  ++  +   + A    
Sbjct: 90  MLRESGQALGLKP-----------------KFSILAADDVTGLLRDAGATTDNAQARRWQ 132

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
              +L       +      E    +                    + +     +     P
Sbjct: 133 WTISL------WKNAMLTPEAAARVAENDDERVAAKVYARYADMLQAYQAVDFDDLIWLP 186

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
           V               K     +++     +  A   L+  +             D    
Sbjct: 187 VTLLQQHADVREHWQNKLRY--LLVDEYQDTNAAQYDLLRLLVGDKGR--FTAVGDDDQS 242

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS-MV 326
              W                               LD  R        +      ++   
Sbjct: 243 IYGWRGA---------------------------TLDNLRRLQTDWPTLEVIKLEQNYRS 275

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLD 383
            +      +     N  +    + +       V +  A NE EEA  +A    ALR   +
Sbjct: 276 TNAILRAANAIIHSNPKLYPKSLWSEHGEGEAVEVRAAQNEDEEAQMVAARIQALRSGRN 335

Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                 A++    + +R ++  L R  I   +S G           + + L  +   +D 
Sbjct: 336 AELAHIAVLYRANHQSRPLEQALRRANIPYVVSGGQSFFDRAEIKDVCAYLRLLANPDDD 395

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            A    V  P                       R       +  L +       +     
Sbjct: 396 PAFLRAVTTP-----------------------RRGIGPQTLAALSTFAGQWKVSMFEAL 432

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                 + +     +                     +           +  +  +  +  
Sbjct: 433 FRDSMPAAVGARPADHLREFGR-----------LLHDIEWRARTAPAGELLREMLETIGF 481

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
               E         E+  K +      I       K    +    I+ +     ++ + E
Sbjct: 482 RAWLEEHSDNPREAEQRWKNVDDFCGWIERKAEEDKVGLTQIAQTISLI---TQLQERGE 538

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
           +   + +     ++ L +  ++L G  EG+ P  T             L   T E+    
Sbjct: 539 QRDAVTLCTLHAAKGLEWPHVVLAGCEEGLLPFFTDD---------RPLTDTTLEEERRL 589

Query: 684 AAHDFEMANGTRHLIYTRSLR----ENNIPTIASRWLQRLLV 721
                  A  T  L+ +   +            SR++  +  
Sbjct: 590 MYVGVTRARQT--LVLSWCQKRKQGRGAAGRSPSRFIGEMQT 629


>gi|289425055|ref|ZP_06426832.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes SK187]
 gi|289428108|ref|ZP_06429811.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes J165]
 gi|289154033|gb|EFD02721.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes SK187]
 gi|289158708|gb|EFD06909.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes J165]
 gi|313764138|gb|EFS35502.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL013PA1]
 gi|313801688|gb|EFS42928.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL110PA2]
 gi|313807180|gb|EFS45673.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL087PA2]
 gi|313812637|gb|EFS50351.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL025PA1]
 gi|313816231|gb|EFS53945.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL059PA1]
 gi|313820638|gb|EFS58352.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL036PA1]
 gi|313822557|gb|EFS60271.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL036PA2]
 gi|313825509|gb|EFS63223.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL063PA1]
 gi|313838402|gb|EFS76116.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL086PA1]
 gi|314914868|gb|EFS78699.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL005PA4]
 gi|314924882|gb|EFS88713.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL036PA3]
 gi|314929979|gb|EFS93810.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL067PA1]
 gi|314956485|gb|EFT00773.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL027PA1]
 gi|314957329|gb|EFT01432.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL002PA1]
 gi|314962483|gb|EFT06583.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL082PA1]
 gi|314967652|gb|EFT11751.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL037PA1]
 gi|314978135|gb|EFT22229.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL072PA2]
 gi|314986293|gb|EFT30385.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL005PA2]
 gi|314989620|gb|EFT33711.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL005PA3]
 gi|315077699|gb|EFT49750.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL053PA2]
 gi|315080861|gb|EFT52837.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL078PA1]
 gi|315084657|gb|EFT56633.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL027PA2]
 gi|315088598|gb|EFT60574.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL072PA1]
 gi|315098845|gb|EFT70821.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL059PA2]
 gi|315101556|gb|EFT73532.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL046PA1]
 gi|327327128|gb|EGE68907.1| exodeoxyribonuclease V, beta subunit [Propionibacterium acnes
            HL096PA3]
 gi|327443753|gb|EGE90407.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL013PA2]
 gi|327452209|gb|EGE98863.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL087PA3]
 gi|327452692|gb|EGE99346.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL083PA2]
 gi|327453450|gb|EGF00105.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL092PA1]
 gi|328753885|gb|EGF67501.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL087PA1]
 gi|328754853|gb|EGF68469.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL020PA1]
 gi|332675728|gb|AEE72544.1| exodeoxyribonuclease V beta chain [Propionibacterium acnes 266]
          Length = 1078

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 84/897 (9%), Positives = 216/897 (24%), Gaps = 162/897 (18%)

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +       A   +    G +++     + P    ++         + +    D     
Sbjct: 234  ALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQWEILRRA--FHGHSNLWLIGDPKQSI 291

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +      +    + + ++  H           LD+     K +    N ++  + +  
Sbjct: 292  YAFRGADIHAYQDAAQSASHVLH-----------LDVNYRTDKPIVEAVNTLFSNAQLGH 340

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDEN 385
               +   T+  + + I        +        +  ++A    +   + +          
Sbjct: 341  DISMELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQAPAGAQLNTATSDQ-------- 392

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                       +L  +V + L    +  D     PL  T  + ++ +         +   
Sbjct: 393  -------FVTEDLVNQVIMMLEGGTVVQDGDGLRPLRPTDIAILVRTRRR----GAELAT 441

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              +    P    G    + S+A                D++ L   + +     +    +
Sbjct: 442  ALSQAHQPAVFSGASPVWSSQAA--------------EDLITLLEALENTDERLRTRLCL 487

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                     +       +   +   +    +  T         +      + V  +    
Sbjct: 488  SDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAALHRPGVLVRLVSM-- 545

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                R + +L    +   +++   ++  T +        WI    +L   +  +      
Sbjct: 546  AGGERYVTDLRQVAQKAHIAACEGRLTATATAA------WIREQQQLAGDDEPRRLDSDQ 599

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------- 672
              + I+   E++ L F  ++L  +  G  PK +   P +    Q  +             
Sbjct: 600  QAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLDISSQGTDRSIA 659

Query: 673  -NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGT----- 725
                  ++        +      R  +              A + L  +    G      
Sbjct: 660  IESHEEDERGENLRLLYVALTRARSAVRLWWSPCPLRHRWSAFQRLVEMDRTTGELGSGV 719

Query: 726  --------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                     + ++            + L  +          P          ++ +    
Sbjct: 720  AGTDPGTLPWLNSGPIATVIAPANQKLLTRSVSAQPRACVVPRTLTRPLDTAFARTSYSG 779

Query: 778  LINDPYAVYARRILKLDFIPHFKKD------------PDRTDRGTLFHNIITEL------ 819
            L  + +A  +  +           +            P  T  GTL H ++  +      
Sbjct: 780  LTANLHAAVSEPMTDGLIDEPVDDETVDDTAPGLCGLPGGTSFGTLVHTVLEYIDTAAID 839

Query: 820  --------------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKIS 864
                          +    +    E+   ++Q++ S          +          +++
Sbjct: 840  LSSEVLSITRRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMN 899

Query: 865  HSFLEHEEKIQSSIEKIFV------------------NIPAKMAIESIGIH--LTGFADR 904
                  +    +++  +                     I A +      +   LTG  D 
Sbjct: 900  FELAMAQSGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDA 959

Query: 905  IDLLKSGFVDITDYKTGDNPKKETA---------------QKLIDPQLSLEAAALKAGSF 949
            +     G   + DYKT   P                          Q  L +AAL     
Sbjct: 960  VLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRTMMFSSHYPLQGLLYSAALHRFLA 1019

Query: 950  SQIDCRKVA------NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNLIEI 997
            S +     A         ++R      +         ++     EL E   + L  +
Sbjct: 1020 SSLPGYDPATHLGPIGYLFVRGMADRPVPDGDMPDGVFTWHPRPELIEAISERLGGL 1076


>gi|321478211|gb|EFX89169.1| hypothetical protein DAPPUDRAFT_95254 [Daphnia pulex]
          Length = 228

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 2/126 (1%)

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
           LI+GGLNEGVWP +  ++P+LSR M+  +N+ + E+ +G  AHDF       +L  TRS 
Sbjct: 100 LIIGGLNEGVWPADEGEDPWLSRPMRETVNMPSLERRVGLMAHDFRQIFAGENLFLTRST 159

Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
           R    PT+ SR LQRL                  +  W  +++  T       P P P L
Sbjct: 160 RLQGAPTLPSRLLQRLEAALEASG--QPLPEPLHWRQWAHRMEIPTIFSPESPPAPCPRL 217

Query: 764 EAQPRT 769
           EA+  +
Sbjct: 218 EARKES 223


>gi|289643896|ref|ZP_06476000.1| RecB family exonuclease-like protein [Frankia symbiont of Datisca
           glomerata]
 gi|289506282|gb|EFD27277.1| RecB family exonuclease-like protein [Frankia symbiont of Datisca
           glomerata]
          Length = 332

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 69/239 (28%), Gaps = 24/239 (10%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
           + S S     +N P     R I +L              RGT+ H ++  L        T
Sbjct: 23  SLSPSRAGDFMNCPLRYRFRVIDRLPEP-----PSSAAVRGTVVHTVLERLFDHPPPGRT 77

Query: 829 PEINHLMKQIIDS-------HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                 + +                         W      +   +   E    + +   
Sbjct: 78  IAAAEALLEPAWHDLLAREPELATLFADEAERAAWLESARSLLTGYFSLEN--PAGLTPA 135

Query: 882 FVNIPAKMAIESIGIHLTGFADRIDL--LKSG-FVDITDYKTGDNPKKETAQKLIDPQLS 938
              +  +  ++S G+ L G+ DR+D    + G  + + DYKTG +P      + +  Q+ 
Sbjct: 136 ARELYVEHVLDS-GVRLRGYIDRLDEAATRDGPALRVVDYKTGRSPGPAFEGQAL-FQMK 193

Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
             A  L       I       L    L  +  I    ++    + +   +     +   
Sbjct: 194 FYAYLLWR-----IRGVIPRELRLYYLADRTWIRVQPDESDLRATERKIDAVWSAISRA 247


>gi|319793174|ref|YP_004154814.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315595637|gb|ADU36703.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 1086

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 72/799 (9%), Positives = 175/799 (21%), Gaps = 109/799 (13%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPII 231
            +        ++    + +             + A              +  +      ++
Sbjct: 343  YQQRMTRLTRLLIAAFADVKRAHGWVDMNDVEQAAQLLLGQSALSGWVQERLDARIAHLL 402

Query: 232  IAGSTGSIPATARLMSTVANHPNGA-----IVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
            I     + P   + +    +   GA      V    D       +     +         
Sbjct: 403  IDEFQDTNPLQWQALYGWLSSYTGAGSSAPRVFIVGDPKQSIYRFRRAEPQVFIAAKKFV 462

Query: 287  T----------YSTHPQYS------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                         TH             +L   D    D  R         G  + +   
Sbjct: 463  REGLDGELLNCDHTHRNARAVVGLVNQAMLAAQDAGEFDGYRAHTTERGDEGELLKLPAI 522

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKK 388
                           +  +       +   L E    ++E    A  +   + +    ++
Sbjct: 523  DRDALGDAAEAAPADDGMLHWRDSLVTPRVLPEEQLLQKECEQAARWVAQRIADGIPPRQ 582

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
              ++   RN    ++  L +  I +       L        + +L++A+      +++A 
Sbjct: 583  IMVLARRRNRLSAMQDALRQRHIPVQQPEKNELHDAPEVQDMVALIDALVSPTHDLSLAR 642

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
             +K PL             +                   L                    
Sbjct: 643  ALKSPLFNIDDEVLVQLALRQRAHSS--------SSWFALIQKGEGLPPVLVETGVSLKK 694

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
              R            +D I      L  +     +     ++++   L    L+      
Sbjct: 695  WQRWLVTLPP--HDAIDAIFHDGDVLAKFGAAVPAAMRQSALANLRGLMSASLEIEGARF 752

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                  +     G  + +      +    +  +  + ++  T L+      P   ++  +
Sbjct: 753  ATPYALVRALRAG-GVRAPSVAAPDAVQLLTVHGAKGLEADTVLMLDCDAAPPRAQTMGV 811

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +                G  +        A          S L  +   ++  +    +
Sbjct: 812  LV-------------EWKGSDSAPTRFVFLASEKTPPACAASLLEEEQRARHREELNGLY 858

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                  R  +   S++                                    W  +L+  
Sbjct: 859  VATTRARERLVLSSVKPARANEG----------------------------SWWARLESA 890

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
             +      P    P+E   R++S  ++      P A  A              D      
Sbjct: 891  CEPTEADEPLVELPVETGVRSFSMKQM------PPAAAAVDQPSAKKAADATVDARAAAF 944

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            G   H ++   +           +  ++                  +   +         
Sbjct: 945  GQAMHRLLEWAV-----PGETLPSAHVRAAAREFMLDPQQARGAATLAERIRAGAGAWVW 999

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL-LKSGFVDITDYKTGDNPKKE 927
            +         E   V+    +             DR+    ++G   I DYK+   P   
Sbjct: 1000 DDRRVDWHGNEVTLVHEGETL-----------RIDRLVRERETGAWWILDYKSAARP--- 1045

Query: 928  TAQKLIDPQLSLEAAALKA 946
                 +  Q+    AA++ 
Sbjct: 1046 ERDATLIAQMQRYRAAVQH 1064


>gi|327329917|gb|EGE71671.1| exodeoxyribonuclease V, beta subunit [Propionibacterium acnes
            HL097PA1]
          Length = 1078

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 83/897 (9%), Positives = 215/897 (23%), Gaps = 162/897 (18%)

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +       A   +    G +++     + P    ++         + +    D     
Sbjct: 234  ALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQWEILRRA--FHGHSNLWLIGDPKQSI 291

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +      +    + + ++  H           LD+     K +    N ++  + +  
Sbjct: 292  YAFRGADIHAYQDAAQSASHVLH-----------LDVNYRTDKPIVEAVNTLFSNAQLGH 340

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDEN 385
               +   T+  + + I        +        +  ++A    +   + +          
Sbjct: 341  DISMELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQAPAGAQLNTATSDQ-------- 392

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                       +L  +V + L    +  D     PL  T  + ++ +         +   
Sbjct: 393  -------FVTEDLVNQVIMMLEGGTVVQDGDGLRPLRPTDIAILVRTRRR----GAELAT 441

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              +    P    G    + S+A                D++ L   + +     +    +
Sbjct: 442  ALSQAHQPAVFSGASPVWSSQAA--------------EDLITLLEALENTDERLRTRLCL 487

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                     +       +   +   +    +  T         +      + V  +    
Sbjct: 488  SDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAALHRPGVLVRLVSM-- 545

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                R + +L    +   +++   ++  T +        WI    +L   +  +      
Sbjct: 546  AGGERYVTDLRQVAQKAHIAACEGRLTATATAA------WIREQQQLAGDDEPRRLDSDQ 599

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------- 672
              + I+   E++ L F  ++L  +  G  PK +   P +    Q  +             
Sbjct: 600  QAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLDISSQGTDRSIA 659

Query: 673  -NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGT----- 725
                  ++        +      R  +              A + L  +    G      
Sbjct: 660  IESHEEDERGENLRLLYVALTRARSAVRLWWSPCPLRHRWSAFQRLVEMDRTTGELGSGV 719

Query: 726  --------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                     + ++            + L  +          P          ++ +    
Sbjct: 720  AGTDPGTLPWLNSGPIATVITPANQKLLTRSVSAQPRACVVPRTLTRPLDTAFARTSYSG 779

Query: 778  LINDPYAVYARRILKLDFIPHFKKD------------PDRTDRGTLFHNIITEL------ 819
            L  + +A  +  +           +            P     GTL H ++  +      
Sbjct: 780  LTANLHAAVSEPMTDGLIDEPVDDETVDDTAPGLCGLPGGISFGTLVHTVLEYIDTAATD 839

Query: 820  --------------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKIS 864
                          +    +    E+   ++Q++ S          +          +++
Sbjct: 840  LSSEVLSITHRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMN 899

Query: 865  HSFLEHEEKIQSSIEKIFV------------------NIPAKMAIESIGIH--LTGFADR 904
                  +    +++  +                     I A +      +   LTG  D 
Sbjct: 900  FELAMAQSGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDA 959

Query: 905  IDLLKSGFVDITDYKTGDNPKKETA---------------QKLIDPQLSLEAAALKAGSF 949
            +     G   + DYKT   P                          Q  L +AAL     
Sbjct: 960  VLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRAMMFSSHYPLQGLLYSAALHRFLA 1019

Query: 950  SQIDCRKVA------NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNLIEI 997
            S +     A         ++R      +         ++     EL E   + L  +
Sbjct: 1020 SSLPGYDPATHLGPIGYLFVRGMADRPVPDGDMPDGVFTWHPRPELIEAISERLGGL 1076


>gi|262194252|ref|YP_003265461.1| hypothetical protein Hoch_0965 [Haliangium ochraceum DSM 14365]
 gi|262077599|gb|ACY13568.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
          Length = 387

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 84/262 (32%), Gaps = 29/262 (11%)

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI-- 824
                S+S + +    P +     + + +              G+  H  +  L+++ +  
Sbjct: 1    MTRLSYSRLSRFETCPLSYRLHYLDQREAGDSV-----PLAFGSAVHAALEHLVREHLAE 55

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             +  P        +  S + +  L   + +        + H F+  E+ +   ++ + V 
Sbjct: 56   ERVGPLCAERAASLWQSAWTESGL---VGLPLFREGLALVHRFVR-EQGVLDHLDVLAVE 111

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
               ++ +   G  + G+ DR+D +    VDI DYKT               Q+SL   A 
Sbjct: 112  QEFRITV--GGFEVLGYLDRVDRVDDETVDIVDYKTNRQLFTRDELDG-SLQMSLYQLAA 168

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004
            +    S     K   L +  L+   +       +          ++ K  +  +    + 
Sbjct: 169  Q----SLWPWAKKVRLTFWMLRHGVQQRTERTSEDL--------EATKRYVATLGSAIDR 216

Query: 1005 EQPFISHLRLSEKSNIQSEYDH 1026
               F + L     +    ++  
Sbjct: 217  ATEFPARLN---SNCTWCDHKQ 235


>gi|213968510|ref|ZP_03396653.1| DNA helicase II [Pseudomonas syringae pv. tomato T1]
 gi|301384752|ref|ZP_07233170.1| DNA-dependent helicase II [Pseudomonas syringae pv. tomato Max13]
 gi|302133168|ref|ZP_07259158.1| DNA-dependent helicase II [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213926798|gb|EEB60350.1| DNA helicase II [Pseudomonas syringae pv. tomato T1]
 gi|330878141|gb|EGH12290.1| DNA-dependent helicase II [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330964448|gb|EGH64708.1| DNA-dependent helicase II [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 727

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 65/727 (8%), Positives = 164/727 (22%), Gaps = 164/727 (22%)

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
           SL D   +   A L     L    S   R+L         R      ++   P S LS+ 
Sbjct: 11  SLNDAQRQAVAASLGRQLVLAGAGSGKTRVLV-------HRIAWLMQVEQASPHSVLSVT 63

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL----------------- 182
            +   A  +   +  ++  I          H L +      W                  
Sbjct: 64  FTNKAAAEMRHRIEQLMG-ISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQ 122

Query: 183 ----LAADFLKIASKYWTERLVE---LNASSPVGY------------------------- 210
                    L +  + W  R  +                                     
Sbjct: 123 RLVKRVMRELGLDEQRWPARQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEAA 182

Query: 211 ---------QIALMRAEAEHLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHP 253
                       L+RA                    +++     +       +  +A   
Sbjct: 183 CQRAGVIDFSELLLRALDLWRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGG 242

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
           +  +V+   D       W     ++ +  S +   +                        
Sbjct: 243 DSLMVV--GDDDQSIYGWRGAKIENIHQYSDDFPDTE----------------------- 277

Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
                 +       +      +   + N+  L  ++         + L  A NE +EA  
Sbjct: 278 ---VIRLEQNYRSTASILKAANGLIINNSGRLGKELWTDVGDGELINLYAAFNEHDEARY 334

Query: 374 IAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
           +   +  +L    ++   A++      +R ++  L R  I   I  G             
Sbjct: 335 VVETIESALKTGISRNDIAILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAM 394

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
           + +  +    +  A+  ++  P                               +  ++  
Sbjct: 395 AYMRLLEGRGNDAALERVINVP-----------------------ARGIGEKTVEAIREH 431

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
                 +      +      L+          ++ I      ++                
Sbjct: 432 ARHADVSMWEAMRLLVANKGLTGRAAGALGGFIELIENLSAKVMEMP------------- 478

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN-----AIEWI 606
               L +     +              E+G+       +++      + +          
Sbjct: 479 ----LHLMTQTVIEQSGLITYHEQEKGEKGQARVENLEELVSAARAFENHESDEELTPLA 534

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             +             E   ++ ++    ++ L F  + L G+ EG++P           
Sbjct: 535 AFLGHASLEAGDTQAQEHEDSIQLMTLHSAKGLEFPHVFLVGMEEGLFP----------- 583

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
                ++L+   +   +    +       + L+ T +       +     + R +     
Sbjct: 584 ---HKMSLEEPGRLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640

Query: 726 DFFDNLK 732
                ++
Sbjct: 641 ALIQEVR 647


>gi|284045042|ref|YP_003395382.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
 gi|283949263|gb|ADB52007.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
          Length = 746

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 72/688 (10%), Positives = 169/688 (24%), Gaps = 117/688 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A QE+R     + G+++  +  + +          AD             
Sbjct: 63  EILAITFTNKAAQEMRERVEMLVGRRTRAM-WVMTFHSACARMLRADAHRL--------G 113

Query: 106 IQRLLEL------ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
             R   +       RL+     +L    K   P +         N +  A+  A ++   
Sbjct: 114 YTRQFTIYDQSDARRLVKRAIEELDVDPKRFTPGAIHHEISDAKNKLRDAEAYAQMVGSF 173

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             +                              K +   L  +NA       +  +    
Sbjct: 174 FEQTV------------------------ADVYKLYESELHRMNAMDFDDLLVRAVNVLE 209

Query: 220 -----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
                          +++     +     R +  +A       V+   D       +   
Sbjct: 210 LFPEVRRRYADNFRHVLVDEYQDTNHVQYRWLQLIAGEHRNLAVV--GDDSQSIYGFRGA 267

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             ++      +   +          +  L+      + + + +N +   +    +  L  
Sbjct: 268 DIRNILDFEDDFPDAK---------VVKLEQNYRSTQTILDAANAVIRNNRGQREKELWT 318

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALI 392
           D                       + + E D+E  EA  +A  +   +DE  ++ + A+ 
Sbjct: 319 DLGIG-----------------DPIKVRELDDEHAEARFVAGEIERIVDEGVSRNEIAVF 361

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R ++  L R  I   +  G             + L  +    D ++   +   
Sbjct: 362 YRTNAQSRVLEDTLVRAQIGYQVIGGTKFYERAEIKDAIAYLTMLVNPQDVVSFTRIANS 421

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P                       R       +  + S       T       P     L
Sbjct: 422 P-----------------------RRGIGQTSLSRVISWANTAGITIWEAALEPDSVPGL 458

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
               ++     +  +                    LS S + +                L
Sbjct: 459 GTAARKSFHRFMGAMRILGERAAANPPVSELLKEVLSESGYLEALEADRTIESQGRIENL 518

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
             L                 +    ++  A      + ++        + +    + ++ 
Sbjct: 519 EELVNVAA----------EYDGSVDLREEAPSLAGFLQQIALVADADGRRDDEGLVTLMT 568

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L +  + L G  EGV+P   A         +    +      + +A  D  M  
Sbjct: 569 LHNAKGLEYPIVFLLGCEEGVFPHQRAIEEGGLEEERRLAYV-----GLTRAMRDLYMTY 623

Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLL 720
                  TR++  +      SR++  + 
Sbjct: 624 AR-----TRAVFGSRSYGARSRFVDEVP 646


>gi|50842796|ref|YP_056023.1| exodeoxyribonuclease V beta chain [Propionibacterium acnes KPA171202]
 gi|50840398|gb|AAT83065.1| exodeoxyribonuclease V beta chain [Propionibacterium acnes KPA171202]
 gi|315105908|gb|EFT77884.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL030PA1]
          Length = 1078

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 111/1060 (10%), Positives = 243/1060 (22%), Gaps = 140/1060 (13%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-LNPPVS 104
            ++ +    + A +ELR    E       +L   +   D  +          +  +   + 
Sbjct: 49   NLLLVTFNRSAARELRGRVYERLVNTRLLLAGAREPSDPCDWSLIRCGRAGFTRVESALD 108

Query: 105  NIQRLLELA------RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL------ 152
            N  R +         R+++            +       L    ++  +LA+ L      
Sbjct: 109  NFDRAVITTTHEFASRMLVELGVLSDHDPSSVLMTDLAPLATEVSDDHYLAQYLDYDRPP 168

Query: 153  -----ADIIDIIETE--EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
                  ++   +  +  E               + W L+    +   +    R V     
Sbjct: 169  SVREKRELSRDVAVKYGEVPIFSKDDADTPVQDVLWALSVR--EDVRRRSKSRSVHTFDD 226

Query: 206  SPVGYQIALMR----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                   AL        A   +    G +++     + P    ++         + +   
Sbjct: 227  LIGDLVKALRDPYRGPLARATLAHRFGLVMVDEFQDTDPLQWEILRRA--FHGHSNLWLI 284

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTH---------PQYSLAKLLDFLDIKREDVKR 312
             D       +      +    + + ++  H         P       L        D+  
Sbjct: 285  GDPKQSIYAFRGADIHAYQDAAQSASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHDISM 344

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE--- 369
                ++    R    +        S       L+          +    +  D   +   
Sbjct: 345  ELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQAPAGAQLNTATSDQFVTEDLVNQVIM 404

Query: 370  --EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
              E  ++               A++   R     +   L++       S   P+ ++  +
Sbjct: 405  MLEGGTVVQDGDGLRPLRPTDIAILVRTRRRGAELATALSQAHQPAVFSGASPVWSSQAA 464

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
              L +LL A+    D      L    L      +   S        +A+   + S     
Sbjct: 465  EDLITLLEALEN-TDERLRTRLCLSDLIGATPADLAASD-SRVRSDLAIDLARWSSTWTM 522

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                     A  +    V        E        +                     C  
Sbjct: 523  TGVWGTVEAALHRPGVLVRLVSMAGGERYVTDLRQVAQKAHIA-------------ACEG 569

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
               +  T   +   Q +  D+  +  +   +             I     +    +   D
Sbjct: 570  RLTATATAAWIREQQQLAGDDEPRRLDSDQQAV-------IIMTIHEAKGLGFPVVLLPD 622

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            I       +++   I        +  + S+  +    I     +            L+R 
Sbjct: 623  ITNGWAPKQSINGPIVWHDGQRRVLDISSQGTDRSIAIESHEEDERGENLRLLYVALTRA 682

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLI-----YTRSLRENNIPTIASRWLQRLLVL 722
             +S + L  +   +      F+                       +P + S  +  ++  
Sbjct: 683  -RSAVRLWWSPCPLRHRWSAFQRLVEMDRTTGELGSGVAGTDPGTLPWLNSGPIATVIAP 741

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
                                R L          R              S      LI++P
Sbjct: 742  ANQKLLTRSVSAQPRACVVPRTLTRPLDTAFA-RTSYSGLTANLHAAVSEPMTDGLIDEP 800

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL--------------------IKK 822
                       D  P     P  T  GTL H ++  +                    +  
Sbjct: 801  VD----DETVDDTAPGLCGLPGGTSFGTLVHTVLEYIDTAAIDLSSEVLSITRRALRMSP 856

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSFLEHEEKIQSSIEKI 881
              +    E+   ++Q++ S          +          +++      +    +++  +
Sbjct: 857  LPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMNFELAMAQSGRSTTMTDL 916

Query: 882  FV------------------NIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYKTG 921
                                 I A +      +   LTG  D +     G   + DYKT 
Sbjct: 917  ASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHLVVDYKTN 976

Query: 922  DNPKKETA---------------QKLIDPQLSLEAAALKAGSFSQIDCRKVA------NL 960
              P                          Q  L +AAL     S +     A        
Sbjct: 977  RIPGVHKLSPHMYDAHTMRTMMFSSHYPLQGLLYSAALHRFLASSLPGYDPATHLGPIGY 1036

Query: 961  FYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNLIEI 997
             ++R      +         ++     EL E   + L  +
Sbjct: 1037 LFVRGMADRPVPDGDMPDGVFTWHPRPELIEAISERLGGL 1076


>gi|239813731|ref|YP_002942641.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239800308|gb|ACS17375.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 701

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 72/706 (10%), Positives = 168/706 (23%), Gaps = 95/706 (13%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
             +       L P  +A++T    T +A  E+R     + G+++    +I +   +    
Sbjct: 36  HKIGRLIQAGLEPKRIAAIT---FTNKAASEMRERAKGLIGREAK-HVVICTFHALGVRM 91

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
              D  +   L P  S +                  D +  +  ++  +   + A     
Sbjct: 92  MREDGAV-LGLKPAFSILD----------------SDDVTKILKDAGGTTDTATARIWQW 134

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
                  I   +          A   +             +     +     +     P+
Sbjct: 135 T------ISKWKNMGLNAAQAEAAAADDNERITARIMARYEERLTAYQSVDFDDLIGMPL 188

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                     A+       G I++     +      ++  +A            D     
Sbjct: 189 KLLRDFDEVRAKWQAAL--GHILVDEYQDTNATQYEVLKALAGERGR--FTAVGDDDQSI 244

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             W                            LD L     D   L     ++       S
Sbjct: 245 YGWRGA------------------------TLDNLRKLPVDYPAL--KVIKLEQNYRSTS 278

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD----- 383
                 +     N  +    + +       V +++AD+E  EA      +          
Sbjct: 279 AILRAANNVIGPNPKLFPKTLFSELGEGEPVRVVDADSEAHEAERAVARIVSLRAGDTAI 338

Query: 384 -----ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                +  +  A++    + AR  +  L +  I   +S G           L        
Sbjct: 339 EGKQYKEFRDFAILYRANHQARVFEQALRKAQIPYKVSGGQSFFDRAEIKDLCGWFRLWV 398

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
             +D  A    +  P    G                                  L     
Sbjct: 399 NNDDDPAFLRAITTPKRGIGHTTLASLGTFA-------------------SQYKLSLFEA 439

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
             + +       R  E   E    + D   +    +    +          I     L  
Sbjct: 440 LFSPSLPSVMPKRTLEGIHEFGRYINDLEYRARRTMGAEDSRTFMLDWLKEIDYEKHLYD 499

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                            + +   +               I+      +++   +    T+
Sbjct: 500 GEDSEQAAAARWTNVMEFVDWMSQRAGGTIDDASGADGNIETERKSLLEVAQTISLLSTI 559

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
             + +  + + +     S+ L +  ++L G+ EG+ P     +       Q  ++  T +
Sbjct: 560 SEREQDQNVVTLSTLHASKGLEWPHVMLIGVTEGLLPFKLEDDN----GRQLQVSDDTLQ 615

Query: 679 KYIGQAAHDFEMANGTRH-LIYTRSLRENNI----PTIASRWLQRL 719
           +   +    +      +  L  + + +        P + SR++  +
Sbjct: 616 RLQEERRLMYVGITRAQRSLAVSWTKKRKQGREMVPCVPSRFIAEM 661


>gi|222480752|ref|YP_002566989.1| ATP-dependent exoDNAse (exonuclease V) beta subunit-like protein
            (contains helicase and exonuclease domains) [Halorubrum
            lacusprofundi ATCC 49239]
 gi|222453654|gb|ACM57919.1| ATP-dependent exoDNAse (exonuclease V) beta subunit-like protein
            (contains helicase and exonuclease domains) [Halorubrum
            lacusprofundi ATCC 49239]
          Length = 1227

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 101/928 (10%), Positives = 208/928 (22%), Gaps = 138/928 (14%)

Query: 163  EKKWEDLHALKNEKYGMWWLLAADF---LKIASKYWTERLVELNAS---SPVGYQIALMR 216
                E L     E Y  W     DF   L      +   + E  A           A   
Sbjct: 275  GPDRERLLDADRELYDAWDARIDDFCTVLSAYRTRYRAAVREYGAVSHTDVASLVDAYFD 334

Query: 217  AEAEHLMKGTK--------------------GPIIIAGSTGSIPATARLMSTVANHPNGA 256
               E                             ++I  +          +S V      +
Sbjct: 335  RSGERSDLPEPLRSVDGSHRDRVLRTYRSRIRSLVIDEAQDVSAVQHAALSHVVTSE--S 392

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTT-----YSTHPQYSLAKLLDFLDIKREDVK 311
             V    D      +W     +     ++  T     + TH   +       +      + 
Sbjct: 393  RVFACGDGLQGIYLWRHADPRWFAAATTEGTYLGVDWDTHENRTATTTYRCVPDIAAGIN 452

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE-- 369
             +         R  +       P     R+     +        F+ +    +    +  
Sbjct: 453  AIAEPVFSDPARGNLGDLDASYPRLDAARDGGEGGDGAAVHVSSFAGIGHPGSAMWADPD 512

Query: 370  ----EAISIAIALRMSLDE--------NKKKSALITADRNLARRVKLELTRFGINIDISA 417
                EA  +A  +   L +        +     ++          +      G+ +  +A
Sbjct: 513  GELGEANMLATHISRGLADGTFCNDDGDPLGVTVLFRRGTRMPEYEAAFAAEGLRVR-TA 571

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
               L          +    +         + L+        F           L+ V   
Sbjct: 572  TDALFDCPAVETALAACEWLTAPGSPQRTSKLLTESPLNAAFDAAPFESRSWDLDRVLDD 631

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                  +        L R+  + +          +  ED   A+ L      C+      
Sbjct: 632  DPAAVGEEQRGILRGLVRLRDRSDAFGRLPASEYV--EDVIEALALRADPNGCVGDTDPD 689

Query: 538  KTNKNSTCGNLSISDWT--------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
            +   N      ++S+W         +L                                 
Sbjct: 690  QRVANLDALVETLSEWEGDNSYSPSELVDLAEPFREDPGVGPTQPSAAGAAYDVEFRTIH 749

Query: 590  KIIETGSCIKANAIEWIDIITRL-----------IDGETVKPKIEKSSTLFIL---GTLE 635
            +       +   A    DI +             + G       E    + I    G L 
Sbjct: 750  RAKGDQDDVVVVADPGFDIWSHGPHARWFVAQGPLAGLAPPTNTEVPDDIAIPPFDGGLY 809

Query: 636  SRLLNFDTLILGGL---------------------NEGVWPKNTAKNPFLSRVMQSDLNL 674
                ++D                             +             +        L
Sbjct: 810  GVGDDWDRDAGLRWATARWRDTVSTSVSDSASDSAKDSGSDSAKDSGSDSANDSADRDAL 869

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS---------RWLQRLLV---- 721
               ++    A ++   A    ++  TR+     +P   S         RWL  +      
Sbjct: 870  VGPDRLRRVAGNERAEAWRLLYVALTRARDHLVVPLPRSNLEEDRTRDRWLDAIRDGLAF 929

Query: 722  ----------LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT-- 769
                      L  +D   +  + G    D   +      +         PP   +     
Sbjct: 930  RRGGTDSYELLLDSDPNRDAIEIGVNDADLFARRARPAPRTGRDEATESPPRRDRLDPWV 989

Query: 770  ---YSFSEIKQLINDPYAVYARRILKLD----------FIPHFKKDPDRTDRGTLFHNII 816
                S S +  L  D        +L              +P           GT  H+ +
Sbjct: 990  PRFLSPSTMYPLTEDVDRYALAHLLGEPLHTTTNEVSGDLPLRFDRLGPEAVGTCLHDAL 1049

Query: 817  TELIKKRINKNT-PEINHLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISHSFLEHEEK 873
            TEL+ + +++         ++   D       E +           F  +   FL+ +  
Sbjct: 1050 TELVARGVDERAIRTTGPEVRTAFDEAVNAIPEPVGEAEREGMFAFFETVLDDFLDSDLW 1109

Query: 874  IQ--SSIEKIFVNIPAKM--AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
             +       +    P      +  +G+ + G AD +    +G   +TD K          
Sbjct: 1110 DRIADPATVVDTERPLDGLAEVGDLGVEIHGRADFVVEYPTGDRFVTDVKIALTEPSSET 1169

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDCRKV 957
            ++  + Q++  A   +    S +   + 
Sbjct: 1170 RRRYELQIAAYAFLARQSGASDVRVHRT 1197


>gi|182415966|ref|YP_001821032.1| UvrD/REP helicase [Opitutus terrae PB90-1]
 gi|177843180|gb|ACB77432.1| UvrD/REP helicase [Opitutus terrae PB90-1]
          Length = 668

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 83/694 (11%), Positives = 191/694 (27%), Gaps = 122/694 (17%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK---SLGDVVEEKFTADLLLSYNLNP 101
             + +   T +A +E+     ++TG    I P      +   +           +  L  
Sbjct: 66  GEILLLTFTNKAAKEMLHRVQDLTG----IEPQRFWGGTFHSLGHRALRIYG-DAIGLPK 120

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             + +      A        +  +    L+ +   +    P            + D++  
Sbjct: 121 NFTILD-----ADESESLLKQAVEHEDKLFFKDKTNPRPGP------------LFDVLSL 163

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                + L     + +  +  +A  F    +  +  R  E N           +    + 
Sbjct: 164 ARNTQQPLADTVAKNFPQYTEIAHRF-PAFATAYATRKREQNVVDYDDLLEFWLELLIKA 222

Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                        +++     +    A+++  +A H     V+   D       W     
Sbjct: 223 PEVAQYFAHRFRHVLVDEYQDTNTLQAQIVDRLAAH---HCVMAVGDDAQCIYSWRGANF 279

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++            HP  ++ ++        E +     V            +       
Sbjct: 280 ENIMTFPDR-----HPGTAIHRIETNYRSTPEILNFANGVLLAQPKGRHFDKELRAARGH 334

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALIT 393
           +                       +++A ++RE+A  I   +R  +++      + A++ 
Sbjct: 335 AQKPF-------------------VVQAMDDREQAEFILKRIRALVEDEGVSLNEVAILY 375

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
               LA  V+L L+R G+   I++G+      H   L +LL  ++   D  A        
Sbjct: 376 RSHFLALEVQLALSRAGVPYQITSGVKFFERQHIRDLVALLRFVYNGADTQA-------- 427

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                       R    L  +  +G +  Y      + V     TQKN   V +     S
Sbjct: 428 ----------WQRIAVLLPKIGEKGAQKIY-----AAAVDHARLTQKNLLDVLNTDDVRS 472

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
           +  K+                   +  + +     +I  W              + +   
Sbjct: 473 KVAKDARDDWASFCASLSEVAEKMQHARPADAVATAIEGW---------YGDYLKGQYAD 523

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            L   +E K L     +  ET         +++  I  L    + +    ++  + +   
Sbjct: 524 YLDRLDELKALVGFAQRFEET--------QDFLAQIVLLNSETSDRHVDPEAEAVRLTTV 575

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
            +++ L +D + + GL +G +P   +                       +    +     
Sbjct: 576 HQAKGLEYDVVFVIGLADGQFPGRRSIESG---------------DVEEERRLFYVAVTR 620

Query: 694 TR-HLIYTRSL-----RENNIPTIASRWLQRLLV 721
            R  L  +            +    SR+L  +  
Sbjct: 621 ARNELYLSYPKVATRGGPGGMLLTPSRFLLEVPT 654


>gi|297571848|ref|YP_003697622.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932195|gb|ADH93003.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
          Length = 836

 Score = 72.6 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 76/720 (10%), Positives = 177/720 (24%), Gaps = 109/720 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD-----VVEEKFTADLLLSYNL 99
             +     T +A +E+R     + G  +  +  I +        +  E     +  S+ +
Sbjct: 101 GEILAITFTNKAAKEMRERLEGLLGDVARRM-WISTFHSACVRILRTEHKALGMRSSFTI 159

Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
                +       ARL+ I   +    IK   P+              L++ ++D+ + +
Sbjct: 160 YDAADS-------ARLMKIVAQEEQIDIKAFSPKM-------------LSRKVSDLKNSM 199

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
            T        HA+  +            +  A   +  RL   NA       +  +    
Sbjct: 200 VT--VAQAKGHAIDRDDQV---------IAQAYAGYQRRLRAANAVDFDDLIMLTVGLLR 248

Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANH---PNGAIVLPGLDCHIPTAIW 271
           ++       +     +++     +  A  +L+  +      P    +    D       +
Sbjct: 249 DNPAIAEHYRRRFRHVLVDEYQDTNTAQYQLVRELVGEETDPIHGELTVVGDADQSIYAF 308

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
              T ++      +   +T            L+      + +   +N +   +       
Sbjct: 309 RGATIRNIEDFDQDFPNATS---------VVLEQNYRSTQNILTAANSLIANNQGRRPKK 359

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSAL 391
           L                 P +    +D  + E+    EE  ++    R          A+
Sbjct: 360 L----------WTAAGDGPKLVGYVADAEVDESAFVVEEIDAV----RTKHGYKYGDIAV 405

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
                  +R ++    R GI   +  G             + L+A+   +D ++I  ++ 
Sbjct: 406 FYRANAQSRAIEEMFVRSGIPYKVVGGTKFYERKEIKDALAYLHAVANPDDTVSIRRILN 465

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P                  E       +           +LD    +            
Sbjct: 466 EP----------KRGLGAKAEETVAFHAEKYGISFG--QSLLDVAHPETAVAEGRSAVDG 513

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
           L +      +     +              +     +  S +  +               
Sbjct: 514 LQKRAANAMIAFATILETARKEAEEGAAPADILDSLMDASGYLDVLQESKDPQDEVRVEN 573

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
           L           + +    + E    I   A             +           + ++
Sbjct: 574 LAEFHAVASDFRVRNPEGTLAEFLDQISLVAD----------SDQIPDEAEGYEGEVVLM 623

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F  +   G  +G +P   +              L +  +   +    +   
Sbjct: 624 TIHTAKGLEFPVVFATGFEDGTFPHIRS--------------LGSPTELAEERRLAYVAL 669

Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
              R  +Y     TRS          SR+L  +         +           W    D
Sbjct: 670 TRARERLYITRSATRSQWGAPQELPRSRFLDEIPDGVIEWRREESSMDTVRGSSWGSARD 729


>gi|56964274|ref|YP_176005.1| ATP-dependent DNA helicase UvrD [Bacillus clausii KSM-K16]
 gi|56910517|dbj|BAD65044.1| UvrD/REP family ATP-dependent DNA helicase [Bacillus clausii
           KSM-K16]
          Length = 763

 Score = 72.6 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 60/679 (8%), Positives = 150/679 (22%), Gaps = 126/679 (18%)

Query: 49  IYVPTKRAIQELRSEFIEITGKKSTILP--IIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
           +   T +A QE+R    E  G +       +I++   +                      
Sbjct: 197 LVTFTAKAAQEMRERMTEYPGIEPMFAQSLLIRTFHSLFYTMLVHADPS----------- 245

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
                 ++LI   +  L    + L  +         A  I             +      
Sbjct: 246 --KWHGSKLIKSGQELLKTQGRALGLDESEFPYDQAATQISW----------WKNHMIAP 293

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP-----VGYQIALMRAEAEH 221
           E +      +             +  +++ + L E               +         
Sbjct: 294 EHVETTDPFEEKA---------ALLYEHYEKALRETGRFDFDDMQLGCLYVLQENNRLLQ 344

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +     ++I       P    ++  +A       V+   D       +     +    
Sbjct: 345 RYQERFAYLLIDEFQDINPVQFEIVKLLAMPQRNICVV--GDDDQSIYRFRGSDPRFIRS 402

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            +++   +             L         +   +N +   +    +  L    +  + 
Sbjct: 403 FTAHYPEAK---------TIHLVENYRSSHPIIASANRVIAENRTRLEKTLVAQHTSDQL 453

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLA 399
             +                     NE EEA  I   ++  + +     + A++       
Sbjct: 454 PYLFFPY-----------------NEEEEATMIVEEIKRLIGKGICPSEIAVLYRTSTSV 496

Query: 400 RRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           R +   L    +   +  G              S L           +  L+K       
Sbjct: 497 RALVDRLVDTTLPFSLEQGFACFYERPFVRRALSFLRIGRNEESPYVMVELLKA--LFIK 554

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                        E                                          E   
Sbjct: 555 QEHLDQLLHIQKTERC-------------------------------------SLLEAIP 577

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
               L     + +  L            + +++                +         +
Sbjct: 578 FLTELPAFQAKKLKTLPADCRRMQKMNPSEALAFAEARLGLNETIKKQGQEGNKFEKGSD 637

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESR 637
           +        F+++    +  +      I I   +   +  +    +   ++ +L    S+
Sbjct: 638 D--------FNQLKVAATQFETVESFLIHIDHVIAKQQECQTFQTRHPKSIQLLTIHRSK 689

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + + G  EG    +   +  L    + D      E+ +   A    M    + L
Sbjct: 690 GLEFSHVFIVGAVEG----SLPHDYALDAWREGDDGPLQEERRLMYVA----MTRAKKEL 741

Query: 698 IYTRSLRENNIPTIASRWL 716
             +  +         +R++
Sbjct: 742 AISAPVHYRGKRAHPTRFV 760


>gi|327327273|gb|EGE69049.1| exodeoxyribonuclease V, beta subunit [Propionibacterium acnes
            HL103PA1]
          Length = 1078

 Score = 72.6 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 84/897 (9%), Positives = 213/897 (23%), Gaps = 162/897 (18%)

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +       A   +    G +++     + P    ++         + +    D     
Sbjct: 234  ALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQWEILRRA--FHGHSNLWLIGDPKQSI 291

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +      +    + + ++  H           LD+     K +    N ++  + +  
Sbjct: 292  YAFRGADIHAYQDAAQSASHVLH-----------LDVNYRTDKPIVEAVNTLFSNAQLGH 340

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDEN 385
               +   T+  + + I        +        +  ++A    +   + +          
Sbjct: 341  GISMELVTAHHQESRIKTATTDGPRYHWSQPFQIRCLQAPAGAQLNTATSDQ-------- 392

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                       +L  +V + L    +  D     PL     + ++ +         +   
Sbjct: 393  -------FVTEDLVNQVIMMLEGGTVVQDGDGLRPLRPNDIAILVRTRRR----GAELAT 441

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              +    P    G    + S+A   L                L   + +     +    +
Sbjct: 442  ALSQAHQPAVFSGASPVWSSQAAEDLMT--------------LLEALENTDERLRTRLCL 487

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                     +       +   +   +    +  T         ++     + V  +    
Sbjct: 488  SDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAVLHRPGVLVRLVSM-- 545

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                R + +L    +   +++   ++  T +        WI    +L   +  +      
Sbjct: 546  AGGERYVTDLRQVAQKAHIAACEGRLTATATAA------WIREQQQLAGDDEPRRLDSDQ 599

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------- 672
              + I+   E++ L F  ++L  +  G  PK +   P +    Q  +             
Sbjct: 600  QAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLDISSQGTDRSIA 659

Query: 673  --NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
              + +  E+          +      +    S         A + L  +    G      
Sbjct: 660  VESREEDERGENLRLLYVALTRARSAVRLWWSPCPRRHRWSAFQRLVEMDRTTGELGLGV 719

Query: 731  LKKRGQCYLDW-------------TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                                     + L  +          P          ++ +    
Sbjct: 720  AGTDPGTLPWLNSGPIATVIAPTNQKLLTRSVSAQARACVAPRTLTRPLDTAFARTSYSG 779

Query: 778  LINDPYAVYARRILKLDFIPHFKKD------------PDRTDRGTLFHNIITEL------ 819
            L  + +A  +  +           +            P  T  GTL H ++  +      
Sbjct: 780  LTANLHAAVSESMTNNLIDEPVDDESVDDTAPGLCGLPGGTSFGTLVHTVLEYIDTAATD 839

Query: 820  --------------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKIS 864
                          +    +    E+   ++Q++ S          +          +++
Sbjct: 840  LSSEVLSITRRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMN 899

Query: 865  HSFLEHEEKIQSSIEKIFV------------------NIPAKMAIESIGIH--LTGFADR 904
                  +    +++  +                     I A +      +   LTG  D 
Sbjct: 900  FELAMTQHGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDA 959

Query: 905  IDLLKSGFVDITDYKTGDNP-------------KKETA--QKLIDPQLSLEAAALKAGSF 949
            +     G   + DYKT   P                          Q  L +AAL     
Sbjct: 960  VLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRAIMFSSHYPLQGLLYSAALHRFLA 1019

Query: 950  SQIDCRKVA------NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNLIEI 997
            S +     A         ++R      +         ++     EL E   + L  +
Sbjct: 1020 SSLPGYDPATHLGPIGYLFVRGMADRPVPDGDMPDGVFTWHPRPELIEAISEQLGGL 1076


>gi|71006344|ref|XP_757838.1| hypothetical protein UM01691.1 [Ustilago maydis 521]
 gi|46097274|gb|EAK82507.1| hypothetical protein UM01691.1 [Ustilago maydis 521]
          Length = 1176

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 62/556 (11%), Positives = 142/556 (25%), Gaps = 66/556 (11%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
           V     DP N L    + +   T +A  E++   +++ GK+     +I +   V      
Sbjct: 80  VAWLILDPANKLRPEDILVVTFTNKAANEMKMRLVKLIGKERVDNLVIGTFHSVCARYLR 139

Query: 91  --ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
               L+   N    + +      L  ++   + +L     +L PE  +S           
Sbjct: 140 KYGRLISLSNNFSIIDSEDAKRMLKSILKELKAELEKENLELKPEQAMSE---------- 189

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA----DF---------LKIASKYW 195
                  I   + +E        L  ++        A     F         +      +
Sbjct: 190 -------ISKAKAKEIDPVRYRQLAEQEAAKSASRKAPIGKQFTGSASFKQVMATIYIMY 242

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATARLMSTVANHPN 254
            ++LV+ NA       +  ++              +++     +      LM  VA    
Sbjct: 243 QKQLVDANALDFDDLLVYGVQLFRRQNQVVRNIRHVLVDEFQDTNITQYELMRLVATASQ 302

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
              ++   D       W +    + +  +                              G
Sbjct: 303 AVSIV--GDPDQSIYGWRSAEIGNLDKMTREFK--------------------------G 334

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                +                   ++T  ++  +         V L    + + EA  I
Sbjct: 335 TQQARLEENYRSTGAILELALRVVQQDTSRVDKDLYTSHPRGLPVVLKSHASAQLEAAYI 394

Query: 375 AIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
           A  ++  +             ++     L+R ++ EL   GI+  +  G      +    
Sbjct: 395 ASEIKRLVAHYGGVLDYNDFVILLRFNYLSRAIEAELQSRGIDSKMMGGHKFFDRMEVKD 454

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           L + L          A   +V  P    G             E  +              
Sbjct: 455 LLAYLALADNPGFTPAFIRVVNVPKRGIGDKGVTDLLTMAKAESCSPMELVERVVRGGKN 514

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
             +   +     +        R +  +      L+  +++ I      +   +      +
Sbjct: 515 PGIKPAMKRGLEHLVEAVLAVRQAARNGTPVAQLLQLLIEKIDYESYLQAQLDYEARWGN 574

Query: 550 ISDWTKLTVTCLQNVC 565
           + +    ++   QN  
Sbjct: 575 VQELISFSIIVAQNTA 590


>gi|312963039|ref|ZP_07777525.1| exodeoxyribonuclease V beta subunit [Pseudomonas fluorescens WH6]
 gi|311282808|gb|EFQ61403.1| exodeoxyribonuclease V beta subunit [Pseudomonas fluorescens WH6]
          Length = 1224

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 107/943 (11%), Positives = 235/943 (24%), Gaps = 120/943 (12%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
               I +W         D+        P   A A          ID +   +   + L   
Sbjct: 270  FEKISLWAADETLEHLDIGTGFSRLTPDGMAEAWKGDPPQHPGIDAMARLKASLDAL--- 326

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKG 228
                       AA ++    +    R  E+     +    A ++A+       +++    
Sbjct: 327  -PTPDAAVLQHAAGWVGKRFEEEKRRRAEMGFDDMLTRLNAALQADGGERLASVIREQFP 385

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSN 285
              +I     + P    +  ++       +   +    D       +      +      +
Sbjct: 386  VALIDEFQDTDPVQYSIFDSIYRIDENHLDSGLFLIGDPKQAIYAFRGADIYTYLRARKS 445

Query: 286  TTYSTHPQYSLAKLLDFLDIK------REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            T    H   +  +    +         R +  R   +  E  G + V  +  L     + 
Sbjct: 446  TLGRHHTLGTNFRSSHAMVEAVNHVFQRAETGRGAFLFRESNGDNPVPFQPVLSQGRKEQ 505

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN-------------- 385
               D       N+    +D  +  A   ++ A + A  +   L+                
Sbjct: 506  LQVDGQTLPAMNLWHLPTDQPVSNAVYRQQLASACATQIVELLNGGQQGKAGFRQPDNSF 565

Query: 386  ----KKKSALITADRNLARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                    A++  D   A+ V+ EL  R   ++ +S    +     +  L + L A  + 
Sbjct: 566  RGVLPSDIAILVRDGKEAQAVRAELAARGVRSVYLSDKDSVFAAQEAHDLLAWLKACAEP 625

Query: 441  ---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                   A    V   L+                 ++  RG +  +    +  ++   + 
Sbjct: 626  DVERPLRAALACVTLDLSLPELERLNQDELAWESRVMQFRGYRVIWRTQGVLPMLRRLLH 685

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              K    +             +A    + +L  +  L        S           +  
Sbjct: 686  DFKLPQTL-------------IARSDGERVLTNLLHLSELLQQAASELDGEQ--ALIRHL 730

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               L         ++  L  +E+   + ++          +    I     +        
Sbjct: 731  AEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICSAKPVDGSRLPLH 790

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
               +    S + +  T E      D  +   L         AK+          L +   
Sbjct: 791  YHDEHG-KSQVSLRPTAELIAQADDERLAEDLRLFYVALTRAKHACW-------LGVADL 842

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
            ++    ++     A G               P   + WLQ L        + ++ +    
Sbjct: 843  KRGNTHSSVLHLSALG----YLLGGGASLGEPAGLAHWLQDLQQGCPAIHYAHVPEAQDS 898

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY------SFSEIKQLINDPYA-VYARRI 790
                 R           KR        A           S + ++   +     ++    
Sbjct: 899  VFHPPRNQATLLAPLLPKRKAAENWWIASYSALRIGDSMSVANLEAPESPQAQKLFDDER 958

Query: 791  LKLDFIPHFKKD-------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS-- 841
            L  D               P   + GT  H ++    ++  N     I + +    +   
Sbjct: 959  LDPDAPREVAASGGDIHRFPRGPNPGTFLHGLLEWAGEEGFNATPQAIENAVGARCNRRN 1018

Query: 842  -------------HFEKENLPPHIDIIWRHLFHKI---SHSFLEHEEKIQSSIEKIFVNI 885
                         H  +  LP     +      +       +    +    +++K+    
Sbjct: 1019 WEGWINTLSGWLGHLLQAPLPVDNAQVALSSLQRYQVEMEFWFASHKVDVLALDKLVCQY 1078

Query: 886  PAKM--AIESIGIHL----TGFADRIDLLKSGFVDITDYKTG------DNPKKETAQKL- 932
                   + +  + L     GF D       G   + DYK+            E  ++  
Sbjct: 1079 THHGVSRVAAEPVLLNGMFKGFIDLTFEH-DGRYYVADYKSNWLGPDDSAYTMEAMEQSI 1137

Query: 933  ----IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                 D Q  L   AL     +++      R +    Y+ L+ 
Sbjct: 1138 LEHRYDLQYVLYLLALHRQLKARLPDYDYDRHIGGALYVFLRG 1180


>gi|324998799|ref|ZP_08119911.1| RecB family exonuclease [Pseudonocardia sp. P1]
          Length = 251

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 63/214 (29%), Gaps = 23/214 (10%)

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNT-----------PEINHLMKQIIDSHFEKEN 847
            +       RGTL H ++  L + R                 E++  +   +        
Sbjct: 1   PEPPSRAQVRGTLVHAVLERLSRCRRPSAPGGGTCPARPCWDELSAGLGDAVTGGPLFTG 60

Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRI 905
                  +W      +  ++   E    + +  + V    + +++     + L G  DR+
Sbjct: 61  PGDPELAVWLDSAAGLLDTYFTLE--DPAEVPAVAVEERVETSLDGADGVVPLRGIVDRL 118

Query: 906 DLLKSGFVDITDYKTGDNPKKETAQKLIDP-QLSLEAAALKAGSFSQIDCRKVANLFYIR 964
           D    G + + DYKTG  P      +     QL   A  +          R    L  + 
Sbjct: 119 DESPDGTLRVVDYKTGATPG--EGFEGSVLFQLKFYALTVLL-----TRGRVPDELRLLY 171

Query: 965 LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
           L     +    ++ + +    L +     +    
Sbjct: 172 LSDGTALTYRPDEDELHRFARLLDAVWSAIRRAA 205


>gi|330807373|ref|YP_004351835.1| exodeoxyribonuclease V, beta subunit [Pseudomonas brassicacearum
            subsp. brassicacearum NFM421]
 gi|327375481|gb|AEA66831.1| Exodeoxyribonuclease V, beta subunit [Pseudomonas brassicacearum
            subsp. brassicacearum NFM421]
          Length = 1229

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 106/973 (10%), Positives = 240/973 (24%), Gaps = 122/973 (12%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
             + I  W +     + D+        P   A A          +D + + +   + L   
Sbjct: 271  FQKITAWVDDESLELLDIGTGFSRLTPEGMAEAWKGDVPNHPGLDAMASLKASLDAL--- 327

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKG 228
                       AA ++    +    R  E+     +    A ++A+       L++    
Sbjct: 328  -PTPDAAVLQHAAQWVGARFEAEKRRRAEMGFDDMLLRLDAALQADGGERLASLIREQFP 386

Query: 229  PIIIAGSTGSIPATARLMSTVANHPN---GAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
              +I     + P   R+  ++    +   G  +    D       +      +       
Sbjct: 387  VALIDEFQDTDPVQYRIFESIYRIEDNDPGTGLFLIGDPKQAIYAFRGADIYTYLRAREA 446

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
            T    H   +  +    +      V +      +  G  +    S   P       +   
Sbjct: 447  TAGRLHTLGTNFRSSHAMVGAVNHVFQNAESRPKGRGAFLFREPSGENPVPFLSVESQGR 506

Query: 346  ENKIPNIQKCFSDVA---------LIEADNEREEAISIAIALRMSLD------------- 383
            +  +    +  + +          L  A   +  A + A  +   L+             
Sbjct: 507  KESLRVAGQVVAALNIWHLSSEQPLSGAVYRQSMAAACASEITALLNGGQSGRDGFTVDG 566

Query: 384  -----ENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                       A++  D   A+ V+  L  R   ++ +S    +  +  +  L   L A 
Sbjct: 567  KVLRGVRPADIAILVRDGKEAQAVRDALSARGVRSVYLSDKDSVFASQEARDLLVWLKAC 626

Query: 438  FKLNDFMAIATLVKH---PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
             + +    +   +      L+                 ++  RG +  +    +  ++  
Sbjct: 627  AEPDAERPLRAALASITLNLSLTELERLNQDELAWEARVMQFRGYRTVWRSQGVLPMLRR 686

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
             +   +    +        E      + L + + Q    L   +        +L++S   
Sbjct: 687  LLHDFELPQALM--VRSDGERVLTNLLHLCELLQQAAGELDGEQALIRHLSEHLALSGQA 744

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI- 613
                  +  +  DE         + +G  L      +    S    +             
Sbjct: 745  G--EEQILRLESDEQLVKVVTIHKSKG--LEYPLVFLPFICSTKPVDGSRLPLHYHDEAN 800

Query: 614  -------DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
                       +  K +       L  L   L         G+ +     N      +S 
Sbjct: 801  KAQISLKPTAELIAKADDERLAEDLRLLYVALTRAQHACWLGVADLKRGSNNRSILHVSA 860

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
            +           + +       ++  G+  + Y       +      R    LL      
Sbjct: 861  LGYLLGGGAPLTESVELRRWLEDLQQGSDAVSYQPMPEATDEHYRPPRNEAVLLEPLVPL 920

Query: 727  --FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                +N        L  +  L   +              + +    +  E   +  D + 
Sbjct: 921  RKASENWWIASYSALRISESLSEGSDTAPESPQAQKLFDDERLDPDAPRETIAIGGDIHR 980

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                              P   + GT  H ++     +  +    +I   + +  +    
Sbjct: 981  F-----------------PRGPNPGTFLHGLLEWAAGEGFSSAPADIEDAIARRCNRRGW 1023

Query: 845  KENLPPHIDIIWRHLFHKI--------SHSFLEHEEKIQSSIEKIFVNIPAKM------- 889
            K          W     K+        +   LE   + Q  +E  F +    +       
Sbjct: 1024 KG--WITTLSDWLQHLIKMPMHVGNDQAPVVLEDLSQFQVEMEFWFASHKVDVQKLDQLV 1081

Query: 890  ---------AIESIGIHL----TGFADRIDLLKSGFVDITDYKTG---------DNPKKE 927
                      + +  + L     GF D       G   + DYK+            P  E
Sbjct: 1082 CRFSHGGVARVAAEPVLLNGMFKGFIDLTFEH-DGRYYVADYKSNWLGVDDMAYTVPAME 1140

Query: 928  T--AQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ-KFKIDCITNDKKK 980
                    D Q  L   AL     +++      R V    Y+ L+  +     +   K  
Sbjct: 1141 QSILDHRYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYLFLRGTRSASQGVYFAKPP 1200

Query: 981  YSADELSEKSLKN 993
             +  E  ++  + 
Sbjct: 1201 RALIEQLDRLFQG 1213


>gi|256831910|ref|YP_003160637.1| ATP-dependent DNA helicase PcrA [Jonesia denitrificans DSM 20603]
 gi|256685441|gb|ACV08334.1| ATP-dependent DNA helicase PcrA [Jonesia denitrificans DSM 20603]
          Length = 833

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 74/699 (10%), Positives = 178/699 (25%), Gaps = 110/699 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A  E+R   I+I G  +  +  + +          A             
Sbjct: 97  SEILAITFTNKAAAEMRERVIQIVGPSAQRM-WVSTFHSTCVRILRAHASAL-------- 147

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++    +       +  L  ++++L  +     P         A+ ++ + D + T   
Sbjct: 148 GLKSTFSIYDSADS-QRLLGLVVRELELDPKRFTPKGV------AQRISGLKDELMT--- 197

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             + L    +  Y          +    + + +RL   +A       +  +    +    
Sbjct: 198 PADHLVRAGSNDY-------EVMIGRIFERYQQRLATAHALDFDDIIVRTVDLLRQFPEV 250

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPN----GAIVLPGLDCHIPTAIWNTIT 275
               +     I++     +  A   L+  +    +     + +    D       +   +
Sbjct: 251 RDHYQRRFRHILVDEYQDTNHAQYALIRELVGTDHDGLTASELTVVGDSDQSIYAFRGAS 310

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++            +PQ     L       +  +     V +    R            
Sbjct: 311 IRNILEFE-----QDYPQARTILLEQNYRSTQTILSAANAVISRNNDRRPK--------- 356

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALI 392
                       K+         +     D E +EA  IA  +   +D++       A+ 
Sbjct: 357 ------------KLWTAAGDGPAIVGYVGDTEHDEARWIAREIDSLMDKHGVRPGDVAVF 404

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
               N +R ++  L R G+   +  G           + + L+A+   +D + +  ++  
Sbjct: 405 YRTNNQSRALEEVLIRVGLPYKVVGGTRFYERKEIKDVLAYLHAVNNSDDDVNVRRIINV 464

Query: 453 P-LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
           P        E  +++   A ++      +    I  L +                     
Sbjct: 465 PKRGLGDRSEAVIAQFAAAHDISFADALRRIDTIPGLTARSTKPARAFAQLLDTWQQNVD 524

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                  L   ++D              +         + +  +L    ++    D    
Sbjct: 525 QGVGPAGLISAILDDTGYL-----ELLRDSEDPQDQSRVENLAELHAVAMEYEKEDPEGG 579

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
           L            +       + G                          +     + ++
Sbjct: 580 LGGFLERVSLVADADSVPSSDDAGHEDT---------------------PVVDPGVITLM 618

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ++ L F    L GL +G +P   A              L    +   +    +   
Sbjct: 619 TLHTAKGLEFPVAFLTGLEDGTFPHMRA--------------LLDDSELSEERRLAYVGV 664

Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGT 725
              R  +Y     TRS   +      SR+L  +      
Sbjct: 665 TRARERLYLTRATTRSAWGSAQQFPPSRFLDDIPAELIE 703


>gi|331017795|gb|EGH97851.1| DNA-dependent helicase II [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 727

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 65/727 (8%), Positives = 164/727 (22%), Gaps = 164/727 (22%)

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
           SL D   +   A L     L    S   R+L         R      ++   P S LS+ 
Sbjct: 11  SLNDAQRQAVAASLGRQLVLAGAGSGKTRVLV-------HRIAWLMQVEQASPHSVLSVT 63

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL----------------- 182
            +   A  +   +  ++  I          H L +      W                  
Sbjct: 64  FTNKAAAEMRHRIEQLMG-ISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQ 122

Query: 183 ----LAADFLKIASKYWTERLVE---LNASSPVGY------------------------- 210
                    L +  + W  R  +                                     
Sbjct: 123 RLVKRVMRELGLDEQRWPARQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEAA 182

Query: 211 ---------QIALMRAEAEHLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHP 253
                       L+RA                    +++     +       +  +A   
Sbjct: 183 CQRAGVIDFSELLLRALDLWRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGG 242

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
           +  +V+   D       W     ++ +  S +   +                        
Sbjct: 243 DSLMVV--GDDDQSIYGWRGAKIENIHQYSDDFPDTE----------------------- 277

Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
                 +       +      +   + N+  L  ++         + L  A NE +EA  
Sbjct: 278 ---VIRLEQNYRSTASILKAANGLIINNSGRLGKELWTDVGDGELINLYAAFNEHDEARY 334

Query: 374 IAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
           +   +  +L    ++   A++      +R ++  L R  I   I  G             
Sbjct: 335 VVETIESALKTGISRNDIAILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAM 394

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
           + +  +    +  A+  ++  P                               +  ++  
Sbjct: 395 AYMRLLEGRGNDAALERVINVP-----------------------ARGIGEKTVEAIREH 431

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
                 +      +      L+          ++ I      ++                
Sbjct: 432 ARHADVSMWEAMRLLVANKGLTGRAAGALGGFIELIENLSAKVMEMP------------- 478

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN-----AIEWI 606
               L +     +              E+G+       +++      + +          
Sbjct: 479 ----LHLMTQTVIEQSGLITYHEQEKGEKGQARVENLEELVSAARAFENHESDEELTPLA 534

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             +             E   ++ ++    ++ L F  + L G+ EG++P           
Sbjct: 535 AFLGHASLEAGDTQAQEHEDSIQLMTLHSAKGLEFPHVFLVGMEEGLFP----------- 583

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
                ++L+   +   +    +       + L+ T +       +     + R +     
Sbjct: 584 ---HKMSLEEPGRLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640

Query: 726 DFFDNLK 732
                ++
Sbjct: 641 ALIQEVR 647


>gi|313792364|gb|EFS40463.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL110PA1]
          Length = 1078

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 84/897 (9%), Positives = 217/897 (24%), Gaps = 162/897 (18%)

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +       A   +    G +++     + P    ++         + +    D     
Sbjct: 234  ALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQWEILRRA--FHGHSNLWLIGDPKQSI 291

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +      +    + + ++  H           LD+     K +    N ++  + +  
Sbjct: 292  YAFRGADIHAYQDAAQSASHVLH-----------LDVNYRTDKPIVEAVNTLFSNAQLGH 340

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDEN 385
               +   T+  + + I        +        +  ++A    +   + +          
Sbjct: 341  DISMELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQAPAGAQLNTATSDQ-------- 392

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                       +L  +V + L    +  D     PL  T  + ++ +         +   
Sbjct: 393  -------FVTEDLVNQVIMMLEGGTVVQDGDGLRPLRPTDIAILVRTRRR----GAELAT 441

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              +    P    G    + S+A                D++ L   + +     + +  +
Sbjct: 442  ALSQAHQPAVFSGASPVWSSQAA--------------EDLITLLEALENTDERLRTSLCL 487

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                     +       +   +   +    +  T         +      + V  +    
Sbjct: 488  SDLIGAPPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAALHRPGVLVRLVSM-- 545

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                R + +L    +   +++   ++  T +        WI    +L   +  +      
Sbjct: 546  AGGERYVTDLRQVAQKAHIAACEGRLTATATAA------WIREQQQLAGDDEPRRLDSDQ 599

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------- 672
              + I+   E++ L F  ++L  +  G  PK +   P +    Q  +             
Sbjct: 600  QAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLDISSQGTDRSIA 659

Query: 673  -NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGT----- 725
                  ++        +      R  +              A + L  +    G      
Sbjct: 660  IESHEEDERGENLRLLYVALTRARSAVRLWWSPCPLRHRWSAFQRLVEMDRTTGELGSGV 719

Query: 726  --------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                     + ++            + L  +          P          ++ +    
Sbjct: 720  AGTDPGTLPWLNSGPIATVIAPANQKLLTRSVSAQPRACVVPRTLTRPLDTAFARTSYSG 779

Query: 778  LINDPYAVYARRILKLDFIPHFKKD------------PDRTDRGTLFHNIITEL------ 819
            L  + +A  +  +           +            P  T  GTL H ++  +      
Sbjct: 780  LTANLHAAVSEPMTDGLIDEPVDDETVDDTAPGLCGLPGGTSFGTLVHTVLEYIDTAAID 839

Query: 820  --------------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKIS 864
                          +    +    E+   ++Q++ S          +          +++
Sbjct: 840  LSSEVLSITRRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMN 899

Query: 865  HSFLEHEEKIQSSIEKIFV------------------NIPAKMAIESIGIH--LTGFADR 904
                  +    +++  +                     I A +      +   LTG  D 
Sbjct: 900  FELAMAQSGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDA 959

Query: 905  IDLLKSGFVDITDYKTGDNPKKETA---------------QKLIDPQLSLEAAALKAGSF 949
            +     G   + DYKT   P                          Q  L +AAL     
Sbjct: 960  VLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRTMMFSSHYPLQGLLYSAALHRFLA 1019

Query: 950  SQIDCRKVA------NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNLIEI 997
            S +     A         ++R      +         ++     EL E   + L  +
Sbjct: 1020 SSLPGYDPATHLGPIGYLFVRGMADRPVPDGDMPDGVFTWHPRPELIEAISERLGGL 1076


>gi|149916946|ref|ZP_01905447.1| hypothetical protein PPSIR1_21899 [Plesiocystis pacifica SIR-1]
 gi|149822224|gb|EDM81615.1| hypothetical protein PPSIR1_21899 [Plesiocystis pacifica SIR-1]
          Length = 1167

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 84/681 (12%), Positives = 180/681 (26%), Gaps = 75/681 (11%)

Query: 375  AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            A A +++L      + ++      +RR      R+    +             + L + L
Sbjct: 422  AYAHKLTLPPPDVPATILERRLEQSRRFIALADRWEWLFER------LRLPAHASLRAHL 475

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            +A+F      A    +  P      P       +  LE  A+         ++   +   
Sbjct: 476  DAVF------AALRALGVPRRSLSLPALGQGARERRLERDAIAALARDRAALEALQIAGH 529

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
             +        V    +    + +      +  + +    +                S   
Sbjct: 530  GLDDAAEAVGVAED-AVSLTDFRAHLEAALSGVRERPPGVRGAGVRLLDLGELARSSSAH 588

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
               +  ++       R +P L  ++      +    ++       A+A  +     R   
Sbjct: 589  TFILHAVEGSLPGAGRAIPFLDDDDRAALDRAAGRSVLAGARATGADAGSFALACARTRS 648

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
               +    +      +  +     L       G   E    +        S   Q    L
Sbjct: 649  SLVISCHRQDHGGREVGRSRYFAALADAVGEEGQTFERHEAQVVPSLAQCSTRGQVLTKL 708

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
               E     +A   E   G         L      T  S  L +L          +    
Sbjct: 709  VAREVAKLGSARTREADAGAAERAPLDPLSAVLGATRGSIELPQLRRAVDWTRARSEDPG 768

Query: 735  GQCYLDWTRKLDYTTKQPH------YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                      L     +         +  +  P    +  + S + ++     P+  +A 
Sbjct: 769  RARVALGAGALAQAHDRLDFDWEGRARERETPPRAPGRVWSGSVTALEDYAACPFRFFAA 828

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN---------HLMKQII 839
            R+L+L   P  + + D +++G + H ++ E+++    +    +             +++ 
Sbjct: 829  RVLRLRPRPSSRDELDASEQGDIRHWVLAEVMEVLRREGLTPLRGGGQAGRESRRARELC 888

Query: 840  DSHFEKENLPPH-----IDIIWRHLFHKISHSFLEHEEK-IQSSIEKIFVNIPAKMAIE- 892
            D   +              ++ R L H+     LE E +      E     +   +    
Sbjct: 889  DGVLDTWEERRRTGPGPFWLLHRDLVHRDLGRLLEGERRVAVEGWEPGEFEVGFGLPDPT 948

Query: 893  --------------------------SIGIHLTGFADRIDLLKSGFV---DITDYKTGDN 923
                                      +  + L G  DR+D    G      I DYK+G  
Sbjct: 949  QSPEELAAGAPVRMEGVPLAIPDRSGTRRLELVGRVDRVDYRGDGRDAEGLIIDYKSGRV 1008

Query: 924  PKKETAQKL--IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
             ++    KL     QL++ A  L +            +  Y+ L+   +      D    
Sbjct: 1009 GERLRYDKLGRTQLQLAVYATWLASVRMD----LSYTDAAYVSLRDGERSRASLLDLSLS 1064

Query: 982  SAD-----ELSEKSLKNLIEI 997
            S +     EL   +   L   
Sbjct: 1065 SMELDGLLELDPTARAELRAR 1085


>gi|66048289|ref|YP_238130.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae B728a]
 gi|63258996|gb|AAY40092.1| UvrD/REP helicase [Pseudomonas syringae pv. syringae B728a]
          Length = 727

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 62/708 (8%), Positives = 163/708 (23%), Gaps = 163/708 (23%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           ++ R L LA        +L+ R      ++   P S LS+  +   A  +   +  ++  
Sbjct: 23  SLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  ISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRLVKRVMRELGLDEQRWPA 141

Query: 198 RLVE---LNASSPVGY----------------------------------QIALMRAEAE 220
           R  +                                                 L+RA   
Sbjct: 142 RQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEIACQRAGVIDFSELLLRALDL 201

Query: 221 HLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            +++     +       +  +A   +  +V+   D       W 
Sbjct: 202 WRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++ +  SS+   +                              +       +    
Sbjct: 260 GAKIENIHQYSSDFPDTE--------------------------VIRLEQNYRSTASILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +   + N+  L  ++         + L  A NE +EA  +   +  +L    ++   A
Sbjct: 294 AANGLIINNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + +  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                               +  ++        +      +     
Sbjct: 414 NVP-----------------------ARGIGEKTVEAIREHARHADVSMWEAMRLLVANK 450

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            L+          ++ I      ++                    L +     +      
Sbjct: 451 GLTGRAATALGGFIELIENLAAKVMEMP-----------------LHLMTQTVIEQSGLI 493

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKS 625
                   E+G+       +++           + +       +             E  
Sbjct: 494 TYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHE 553

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++ ++    ++ L F  + L G+ EG++P                ++L+   +   +  
Sbjct: 554 DSIQLMTLHSAKGLEFPHVFLVGMEEGLFP--------------HKMSLEEPGRLEEERR 599

Query: 686 HDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             +       + L+ T +       +     + R +          ++
Sbjct: 600 LAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVR 647


>gi|322417957|ref|YP_004197180.1| exodeoxyribonuclease V subunit beta [Geobacter sp. M18]
 gi|320124344|gb|ADW11904.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. M18]
          Length = 1116

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 112/1001 (11%), Positives = 237/1001 (23%), Gaps = 131/1001 (13%)

Query: 57   IQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
             + L +  +    + +     I ++    +     +   S +L        +   L  + 
Sbjct: 98   ARRLLASAVRSFDEAA-----IFTIHGFCQRMLQDNPFESGSLCDTELVTDQGKILTEIA 152

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
              +              +  +  +SP + + LA+ +    +     +   E         
Sbjct: 153  QDYWRINCYGAPVERIAAADAARVSPESLLKLAQRVCSDPNATVIPDPPAE-------TS 205

Query: 177  YGMWWLLAAD--FLKIASKYWTERLVELNASSPVGYQIALMRAEAE------HLMKGTKG 228
                WLLA    F         +R    N  S       L  A          L++    
Sbjct: 206  EVEDWLLALKRGFCDYLRAELPKRKRLRNVRSFDDLLGDLRAALTRTGSTLPRLIRERYQ 265

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS-TNITSSNTT 287
              +I     + P    +   +             D       +      +      +   
Sbjct: 266  AALIDEFQDTDPIQFAIFDAIYPVGCEIPFFLIGDPKQAIYSFRGADIFAYMGAAEATEE 325

Query: 288  YSTHPQ-YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
              T  Q +     L          + L  +  ++    +  +       T        L+
Sbjct: 326  RHTLLQNFRSEPGLIEAVNTLFASRDLPFLYPQIGFNKVEAAPKEASRLTEAGERKAPLK 385

Query: 347  NKIPNIQKCFSDVALIEADN--EREEAISIAIALR---------------------MSLD 383
              +   +     +   +A +      A  IA  LR                         
Sbjct: 386  FWLAPRKDAGKPINKGDAWDQLPETVASEIARLLRGGAAGKLAIEELKKEGEDERWAQRA 445

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
               +  A++      A+ ++  LTR GI   + +   L  +  ++ L  LL+A+ +    
Sbjct: 446  VQPRDIAVLVRANRQAKLMQRALTRRGIPSVLCSAGNLFESDEAAELLRLLSAVAQPGHE 505

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
              +   +   L      E  L           L   +  +D  +  S +   +   +   
Sbjct: 506  SLLRGALATDLVGVSGAELALLMDDEKGWEEILEEFRGYHDTWNTGSCMSMALQFMEKRK 565

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                  +    E +                L   +T   +        +     + C   
Sbjct: 566  VRERLLAEPMGERR------------LTNLLHAIETIHQAQVKERLGMEGVIAWLACRIT 613

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                +      L  +E    L ++       G       + +        D   +    +
Sbjct: 614  EEPKKEEYEIRLETDEAAVQLVTIHK---SKGLEYPIVFLPFCWAEFNGKDEGALFHDED 670

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
            +   L I                   +  +      +    + ++               
Sbjct: 671  RKVVLDIGSQELEMNKALAAQEALAESLRLLYVALTRGKHRTYLIWGAFKDAGDSALHYL 730

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
               D   A G   L              +S     LL +      +  + R +   + T 
Sbjct: 731  LHPDQTAAKGQVTLKDCEIRERLTSLAQSSSGAIELLDM-PPADLEQYRARDERTPELTP 789

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
             L   T    ++          Q  T      +    D  +       +          P
Sbjct: 790  VLFTGTITRDWRVASFTSLSSRQHHTA-----ELPDRDEGSPVEEHSARDVEPSGIFAFP 844

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
                 G   H I  EL       +  +    ++ ++D   +K        +  R +   +
Sbjct: 845  KGAKAGIFLHKIFEEL-------DFTQAAARLEPLVDDQLDKHGFSADWSMAVREMVRNV 897

Query: 864  SHSFLEHE--EKIQSSIEKIFVNIPAKMAI----------------------ESIGI--- 896
              + L  E     Q  +E+    +     +                      +       
Sbjct: 898  LQAPLGSEGITLTQVGLERRLTELEFFFPLSLVTSDRLKEAAARFMARHDAADGTNFPVD 957

Query: 897  ------HLT---------GFADRIDLLKSGFVDITDYKT----------GDNPKKETAQK 931
                   L+         GF D +     G   I D+K+          G    K   ++
Sbjct: 958  VADLFSRLSFSPVKGMLLGFIDLVFEQG-GRYYIVDWKSNHLGNAPQDYGQTALKRAMEE 1016

Query: 932  LIDP-QLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
               P Q  L   AL      +I      R    +FY+ L+ 
Sbjct: 1017 NFYPLQYLLYTVALDNYLRLRIPDYDYDRHFGGVFYLFLRG 1057


>gi|108759273|ref|YP_630123.1| hypothetical protein MXAN_1877 [Myxococcus xanthus DK 1622]
 gi|108463153|gb|ABF88338.1| conserved domain protein [Myxococcus xanthus DK 1622]
          Length = 391

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 83/263 (31%), Gaps = 31/263 (11%)

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
              + +  S+S + +    P +     + K    P           G   H ++  L+++ 
Sbjct: 3    ALRNQHLSYSRLSRFEACPLSYQLHYLDKRTAEPGV-----PLSFGKALHAVLERLLQEV 57

Query: 824  INKN--TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
            I+             Q+    +    L     +       +I   F+  ++      + +
Sbjct: 58   IDTEYVGRLSEERALQLYREEWAASGLSG---LDVFQQGLRILQDFVR-QQGRVDCRDIL 113

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLE 940
             V    ++ +      + GF DR+D +    V + DYK+      +E        QLSL 
Sbjct: 114  AVEKEFRLPV--GPFTVLGFIDRVDWVDDETVHVMDYKSNHQLFTREELDS--SLQLSLY 169

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
            A A +          K   L    L+     +           +E  E +L  +  +   
Sbjct: 170  ALAARR----MWPWAKKVRLSMWMLRHGVLQETTRT-------EEQLEAALAYVETLGQQ 218

Query: 1001 LQNGEQPFISHLRLSEKSNIQSE 1023
            ++  E  F + L  +    +  +
Sbjct: 219  METAE-SFPARLNPN---CVYCD 237


>gi|54066565|gb|AAV28539.1| ATP-dependent deoxyribonuclease chain-like [Listeria welshimeri]
          Length = 430

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 102/359 (28%), Gaps = 29/359 (8%)

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
             L  +  L +     +       LA +   ++ EE    DL                  
Sbjct: 97  AALDQKDRLKIFSKATSRKGFYSELAKLFKEMKQEEVSVADLENSAI-NMSKSVTNKIHD 155

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           + +  + + E L            + L+  +        +  III G T        ++ 
Sbjct: 156 ISLIYQKYEELLA--GKFLENEDYLRLLADKIIESDYLNQTEIIIDGFTSFSKQELTVIE 213

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +    +   V   L+      I   + E S    S+         ++L ++     I  
Sbjct: 214 KLMEKCDKVTVSLTLNV---PEIQKGLEEYSMFKQSTEAY------FALLEMAKLNKISV 264

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
           E  K               ++  +                     ++   D+A+ +A+N 
Sbjct: 265 ESDKLFLENKRAKSDSLAFLADVWGNNKFV-------------TFEEKPQDLAIHQANNR 311

Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
           R E   IA  +R         +  A++T +  +     +  +  F I I I     ++  
Sbjct: 312 RAEIEGIAREIRQLTLNGYRYRDMAILTRNISDYDVLCETVMESFDIPIFIDKKRAMAKH 371

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNS 482
                + S ++AI     +  I   VK             + R  + LE   L     +
Sbjct: 372 PFIEFIRSSIDAILFNWKYEPIFQAVKTEFFFDVSENTSIMRRKADILENYVLENGIQN 430


>gi|225388765|ref|ZP_03758489.1| hypothetical protein CLOSTASPAR_02501 [Clostridium asparagiforme
           DSM 15981]
 gi|225045172|gb|EEG55418.1| hypothetical protein CLOSTASPAR_02501 [Clostridium asparagiforme
           DSM 15981]
          Length = 609

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 75/682 (10%), Positives = 158/682 (23%), Gaps = 132/682 (19%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +S+ +   T+ A  E++  + ++T       P   +   V            Y+    V 
Sbjct: 48  SSILVITFTRAAATEMQKRYEQMTQTGCAK-PAFGTFHSVFFMILKLAY--RYDAGSIVR 104

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
             QR+  L  L+  +  +  D  + +                                E 
Sbjct: 105 EEQRVEFLRELLRRYEIETEDESEFISGVLS---------------------------EI 137

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ---IALMRAEAEH 221
                  +  E Y      +AD  +   K +   L                 L    A+ 
Sbjct: 138 SMVKGEMIGVEHYYAKSC-SADVFRRLYKGYEAALRGAGLLDFDDMLVMCRELFDQRADI 196

Query: 222 LMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
           L         I+I            ++  +A   N   ++   D       +     +  
Sbjct: 197 LQAWQRKYRYILIDEFQDINRIQYEVIRMMALPENNLFIV--GDDDQSIYRFRGARPEIM 254

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      +P      L        + +   G + +    R      +   P     
Sbjct: 255 LGFEK-----DYPGTEKILLDQNYRSTEQIIGAAGRLIDHNKTRFSKDITAVRGPGR--- 306

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397
                              V   E  +   EA +IA  LR  +      +  A++     
Sbjct: 307 ------------------SVVAKEFADPGAEARAIAAQLRDYVRLGVPYEDIAVLYRTNI 348

Query: 398 LARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             RR+   L  + I   +   +P L     +  + + L A         +  +V  P+  
Sbjct: 349 GPRRLVEVLMEYNIPFHMRDKLPNLYEHWIARDILAYLRAAAGDMSRANLLRIVNRPIRY 408

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                               +  +   + ++     L  I T      V + +  +  +D
Sbjct: 409 ISRDALDGKTISLEAVKSFYQDREWMVERVEQLEYDLKNIRTLPPGKAVNYIRKAVGYDD 468

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                                        G   +    +     L  +            
Sbjct: 469 -----------------------YLREYAGERQLD--PEELREVLDQLQESAMPHASLEE 503

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
           +E   +       +   +                          +  +   + ++    S
Sbjct: 504 WETYMENYRRKLEEQAAS--------------------------RQLRQEGVHLMTMHSS 537

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L F  + +   NEGV P + A                 A+    +      M      
Sbjct: 538 KGLEFRVVFILDANEGVTPHHKA--------------ALDADLEEERRMFYVAMTRAKDR 583

Query: 697 LIYTRSLRENNIPTIASRWLQR 718
           L         +     SR+++ 
Sbjct: 584 LHVYYVKERYHKKQTVSRFVEE 605


>gi|168703681|ref|ZP_02735958.1| ATP-dependent DNA helicase [Gemmata obscuriglobus UQM 2246]
          Length = 755

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 76/763 (9%), Positives = 197/763 (25%), Gaps = 128/763 (16%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             +     Y     +   ++     T +A  E+++   ++          + +   +   
Sbjct: 38  RVITRRVAYLLRAGVRAHNILAITFTNKAAGEMKNRVEKLAPGNRVW---VSTFHSLGAR 94

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                               R   +          + D ++    ++    P        
Sbjct: 95  LLRQYAERL--------GFDRNFTIYD-TDDRNKLVKDALEAAGIDNVKFTP-------- 137

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
             + +A  I   + +            + +          +      + +RL   NA   
Sbjct: 138 --ERIAGAISKAKNQLVTPPQYERTATDFF-------QKTVAAVYPRYEKRLRSANAMDF 188

Query: 208 VGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                    A  ++             I+I     +  A  +++  ++ +     V+   
Sbjct: 189 DDLLYLPAMALKQNEELRAELDSRFRYIMIDEYQDTNSAQYQIVKQLSINNPNVCVV--G 246

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       W     K       +      P      L       +  ++    + +    
Sbjct: 247 DPDQSIYKWRGSDIKIILDFERDF-----PNARTITLAQNYRSTKSIIRAASVLIDHNKQ 301

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
           R                      +  +         V +I  DN  +EA  + + ++ ++
Sbjct: 302 RK---------------------KKDLVTDNPQGEPVNVITFDNGLDEAEGVVVRIKEAV 340

Query: 383 DE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                  +  A+      L R ++    + G+   I  G+       +  + + L  +  
Sbjct: 341 KAGTFKYRDHAIFMRINALTRSLESAFVKHGVPFQIVKGLAFFERKENRDVLAYLRLLTN 400

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
            +D ++   +V  P    G       ++   + E+  L        I ++K      +  
Sbjct: 401 PHDGVSFLRVVNAPARGIGKVSLDKLQSFAASQEIGLLAAAGQIAKITEIKGKAATGLRD 460

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
              +  +   +S++ +   EL  L++D        ++   T++       ++S+      
Sbjct: 461 F--HRLMTDLRSKMDQPPHELVRLVLDKSGY--EAMLRDSTDEEDADRLANVSELVTAAK 516

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                            W E+  +T++    +I         +                 
Sbjct: 517 QF---------------WDEDNSRTITDFLEQITLASDTDGWD----------------- 544

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
               E++  + ++    S+ L F  + +  + +G+ P   +              L   E
Sbjct: 545 ----EQADHVSVMTLHASKGLEFPAVYILAVEQGLLPHERS--------------LANDE 586

Query: 679 KYIGQAAHDFEMANGT-RHLIYTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
           +   +    F       + L    +     R      I S+++Q L            + 
Sbjct: 587 EIEEERRLCFVGMTRAMKELYLCHARMREFRGQLNYCIVSQFIQELPRDVRFIDPSMARN 646

Query: 734 RGQCYLDWTRKLDYTTKQPHY---KRPKPFPPLEAQPRTYSFS 773
             +   D  R       +       RP   P           +
Sbjct: 647 VARTAADEWRVKSSAAAKDWADTGLRPLIPPASRKPNPGLKPT 689


>gi|124514841|gb|EAY56353.1| putative UvrD/REP helicase [Leptospirillum rubarum]
          Length = 649

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 72/688 (10%), Positives = 181/688 (26%), Gaps = 121/688 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPV 103
            + +   TK+A + L+    ++      +L    +   V                    +
Sbjct: 54  RMLVLTFTKKAARVLQHRLADLLTGPQVLL-WAGTFHHVGYRLLREFGSRIGYAGTPVVI 112

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               ++  L  ++  +   L   +              PA  I  A +L+     +  E+
Sbjct: 113 DREDQVDLLKSILSAFPEGLRKELP-------------PAGQILNAISLSRNSM-VSLED 158

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-- 221
             ++    L             + +      + E   +   +         +        
Sbjct: 159 VIYDRFSGLIP---------VIETVTRIRTEYEEVKRKDRLADFDDLLTGWLDILESGPD 209

Query: 222 ---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
              L++     +++     + P  + ++  +A            D       +     ++
Sbjct: 210 VLELLQERFRFLLVDEYQDTNPLQSTILDKLAARHKS--FFVVGDDSQSIYSFRGAHVEN 267

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       +P+  + +L                          ++  +      ++
Sbjct: 268 ILTFPDR-----YPEARIYRLETNYRSSP-----------------PILDLANRIILGNE 305

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADR 396
            R    L        +    V L    ++ ++A  I   +   LD      + A++    
Sbjct: 306 RRIEKTLRPFHTEEGEAPRTVGLY---SDADQAHFIGSTVDQLLDGGTQASEIAILYRSH 362

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L+  ++ EL R  I   I++G+      H   + + L  +    D +A+  L+      
Sbjct: 363 YLSLPIQFELARRKIPFSITSGLRFYEQAHIKDVLAHLRLLLNPRDTLAMTRLL------ 416

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                                  +    + +  S  L R+  +  +        ++ +  
Sbjct: 417 -----------------------RMIPRMGERSSEKLIRVLGEVEDVFSGLTDEKVLKTA 453

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
             L+   V  + + +  L   +  + ST G L +    +     L               
Sbjct: 454 PSLSREGVRKLGERLFSLRELQRKEESTVGLLVMEILEEGYRRDL-------------YD 500

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             E+ +   +      E     K       +I       E           + +    ++
Sbjct: 501 IREDPEEREADLVAFAEQLGEQKDLEGFLGEITLLENLEEMALSNASVPDRVILSSIHQA 560

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           + L +DT+ +  +NEGV+P   +                  +    +    +      R 
Sbjct: 561 KGLEWDTVFVLSMNEGVFPPEKS--------------ALRPQDLEEERRLFYVAVTRARR 606

Query: 697 LIYTRS-----LRENNIPTIASRWLQRL 719
            +          R        SR+L  +
Sbjct: 607 DLLLCVPESAISRGRGERLYPSRFLSEI 634


>gi|121634579|ref|YP_974824.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
            FAM18]
 gi|20271140|gb|AAM18525.1|AF495855_1 RecB [Neisseria meningitidis]
 gi|120866285|emb|CAM10026.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
            FAM18]
          Length = 1204

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 88/928 (9%), Positives = 219/928 (23%), Gaps = 111/928 (11%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII-ETEEKKWEDLHALK 173
            L      +L  +  D             A      + LAD    +   EE +   +  L+
Sbjct: 291  LEAKLHERLLKLASDKLEAGLKKGKTPDAAVFAELQKLADFRRDLDALEEAEEATIIRLQ 350

Query: 174  NEKYGMWWLLAADFL--KIASKYWTERLVE-LNASSPVGYQIALMRAEAEHLMKGTKGPI 230
                  +   +   +      + + + L++   A +   +   L RA AE+         
Sbjct: 351  L-DLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAENWETA----- 404

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT--EKSTNITSSNTTY 288
            +I     + P    +   +        +    D       +              +   Y
Sbjct: 405  LIDEFQDTDPLQYEIFQKIF-IAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRY 463

Query: 289  STHPQYSLAKLL-------DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            +    Y     L         L  +   ++ +G            +S          +  
Sbjct: 464  TLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPERPAVQVRWLHE 523

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
             D  +     +++  +D    E  +   EA    +  +    ++   + L+         
Sbjct: 524  NDNEKANKDVLRRRAADYCADEIAHALNEAAECRLNFKGCPLQSGDIAVLVRTHNEAVMV 583

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                  R   ++ +S    +  +  ++ L++L+    +      +  ++   +  +   +
Sbjct: 584  SAALKKRQVQSVLLS-RESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSGIFGYDAQQ 642

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                           +         +     LD          +  +      E + L+ 
Sbjct: 643  L----------HDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLLSR 692

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                 +      L              ++  W +  ++   N   D           E  
Sbjct: 693  NNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNSGDNRAIR-----LESD 747

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--TVKPKIEKSSTLFILGTLESRLL 639
            + L  + +     G         +          +   +     ++  L      E    
Sbjct: 748  EDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQLSEDEQK 807

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
             +    +      ++   T     L+  + +  +  TA+  +            +R  + 
Sbjct: 808  QYADEEMAERLRLLYVALTRAEEQLN--IYAAYSSDTADNPLAYLIEGLPQ--DSRETVR 863

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
                 E +   +  R  +RL             +       +      T +      P+ 
Sbjct: 864  QTYDWEKDGIAMLKRNWRRLTDNAPAGTDFAFTEDAPPPAAYRGNAGQTAEFAANSIPER 923

Query: 760  FPPLEAQPRTYSFSEIKQ------LINDPYAVYARRILKLDFIPHFKKD--------PDR 805
                       + S   Q          P    A   +                   P  
Sbjct: 924  RFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPSETPTASDGISIHDFPKG 983

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH------- 858
            T  G   H I+ +    +  +       L+   +  +  +E   P +  +          
Sbjct: 984  TQAGLCLHEILEDF---KFGQAAAGQETLIADKLKKYGFEEIWLPAVAEMAEACRKTPLT 1040

Query: 859  --------------------------LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                                         ++   F   +      + +          ++
Sbjct: 1041 GAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDI-RLPEVCRAAAE-----TLD 1094

Query: 893  SIGIH--LTGFADRIDLLKSGFVDITDYK-----------TGDNPKKETAQKLIDPQLSL 939
               ++  L GF D +     G + + DYK           T     +  A      Q  +
Sbjct: 1095 FHTVNGFLNGFIDMVCQDPDGNICVIDYKSNHLGADASAYTQQAMDEAVAHHHYYLQALI 1154

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQ 967
             A A       +       ++ Y+ L+ 
Sbjct: 1155 YAVAAARYFKLRGQPPAAVSVRYLFLRG 1182


>gi|288923768|ref|ZP_06417860.1| RecB family exonuclease-like protein [Frankia sp. EUN1f]
 gi|288344884|gb|EFC79321.1| RecB family exonuclease-like protein [Frankia sp. EUN1f]
          Length = 363

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 80/306 (26%), Gaps = 24/306 (7%)

Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
           +         A+          GT         G+                    P    
Sbjct: 18  ATDAPGAEVAAADGAAAARPASGTPGAAGRGTEGRSPGQLGGGPGRAGDPSVPSVPSVPS 77

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                  + S S     +N P     R I ++          +   RGT+ H ++  L  
Sbjct: 78  QGPRPVASLSPSRAADFVNCPLRYRFRVIDRIPEP-----PSEAATRGTVVHGVLERLFD 132

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENL-------PPHIDIIWRHLFHKISHSFLEHEEKI 874
               + T      + + + +     +         P     W      +   +   E+  
Sbjct: 133 LPPRERTQPAAAGLVEPVWADLLARDASLGGLFTDPTALAAWLDSARDLLTGYFTLEDPR 192

Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRID--LLKSGF-VDITDYKTGDNPKKETAQK 931
           +  +      +  +  +   G+ L G+ DR+D      G  + + DYKTG +P     + 
Sbjct: 193 R--LAPAARELYVEHVL-GSGLRLRGYVDRLDEAQTPQGTALRVIDYKTGRSPGPAF-EG 248

Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
               Q+   A  L               L    L  +  +    ++ +  + +   E   
Sbjct: 249 AAMFQMRFYALVLWRS-----RGVLPRELRLYYLGDRTWLRAAPDEAELRATERRIEALW 303

Query: 992 KNLIEI 997
             +   
Sbjct: 304 AAIARA 309


>gi|260906257|ref|ZP_05914579.1| hypothetical protein BlinB_13096 [Brevibacterium linens BL2]
          Length = 961

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 87/686 (12%), Positives = 173/686 (25%), Gaps = 56/686 (8%)

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            + L++ R          + +  R    +   +  D         +             +
Sbjct: 151 RETLELLRLHGVSWPLGIDSIELRDKRDTLPQVWQDILGAVEAAGVTVTEAAGPTEAPKL 210

Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            ++   +    A + A  L    D  +    +     +    +  +L R        A  
Sbjct: 211 TIVRGPDNWSTAEAAARYLANVNDRQR----ICIIAGDATAVLDQQLARRQAPTLGIADS 266

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
             +    + IL   L A+    D   +A  +              S     +  V L+  
Sbjct: 267 N-AANPSAQILPVFLGAVLPPTDIRRVAEFLHLSFGTNDASTTASSLVPQGVSSVLLQVL 325

Query: 480 KNSYDIM-DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                I  D +S  +  +   K+ T      +  + E  +     +      +       
Sbjct: 326 TQEPGISSDPESAWMRALDQLKSRTAENSDTATRAWETAQALDGFLRTRPPAVD------ 379

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
           +++          DW    +  L      +  +        E  T  + F   I      
Sbjct: 380 SDELDLASLDPALDWLATRLRRLSGNRTADTAQDDTTELIAEAATHLASFRAAISRLGTN 439

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL--ILGGLNEGVWPK 656
                E  DI        T      +++   ++ +        DT+       +     +
Sbjct: 440 TIRVRELFDIAESSAPTATRVDAHAQAADWTVVTSPAEVPEGSDTVVWWCSQRSATSANE 499

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
               +   +          + EK   + A + +       LI          P      L
Sbjct: 500 TWDPDEVDALAQSGVRISTSTEKERLRQAAELDGLRAAVDLICFCPETSRGEPVTLHPVL 559

Query: 717 QRLLVLGGTDFFDNLKKR---------------GQCYLDWTRKLDYTT------------ 749
            RL         ++                        D T +LD               
Sbjct: 560 SRLAEDIAAADGEHFPDASVDTVLTDPTVARSVADLITDETWQLDDVAIPTSIVSLEQFT 619

Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                 R          P T SFS+I QL++DP      R L L     F    D    G
Sbjct: 620 APSRVSRVLEGDFRHLLPETLSFSQIDQLLSDPLGWTLERGLGLRRGFTFDIPTDNRMIG 679

Query: 810 TLFHNIITELIKKRINKNTPEINHL-----MKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
            L H ++ +L++ R + +   I+         +++     +  LP  +           +
Sbjct: 680 NLVHAVVEDLVQARNDSDNSAISPAGVGKTFDRLVPRFASELLLPGQLARKNTIRSTATA 739

Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAI------ESIGIHLTGFADRID-LLKSGFVDITD 917
                        I  +                E++ + L G  D ++         I D
Sbjct: 740 SLVHLFTTLSNRGITIVGAETGFDHDWVLTVAGEAMTVQLRGQRD-LEGAFSDSRPAIID 798

Query: 918 YKTG--DNPKKETAQKLIDPQLSLEA 941
            K    +   +         QLS+ +
Sbjct: 799 LKWANYEKRYRTMIDDGEAVQLSVYS 824


>gi|212716230|ref|ZP_03324358.1| hypothetical protein BIFCAT_01146 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660742|gb|EEB21317.1| hypothetical protein BIFCAT_01146 [Bifidobacterium catenulatum DSM
           16992]
          Length = 1354

 Score = 72.3 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 105/917 (11%), Positives = 222/917 (24%), Gaps = 159/917 (17%)

Query: 55  RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY-NLNPPVSNIQRLLELA 113
           RAI+EL      ++  +      + +L  V     TA        L   ++  ++ + + 
Sbjct: 57  RAIRELS----AVSQARP-----VTTLSAVAFRLLTAARSAQGKPLPKLLNGAEQDVIIR 107

Query: 114 RLILIWRN--------KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           +++                D+++  +  S  S  ++  +    A  L D++  +     K
Sbjct: 108 KVLASHVEHRQHGDECDTCDLLRVYFAVSEWSGLVADDSTDAFANQLRDMLARMNEIGAK 167

Query: 166 WEDLHALK-------------NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
            E  + L               E+    W LA    +  +                   I
Sbjct: 168 PELENMLIARAASRNGELDARRERLRTQWRLAFALREEYNAAIRAAYSGEYRLDASQLMI 227

Query: 213 ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC-------H 265
               A ++         +I+     +  A   L+  + N     +++   D         
Sbjct: 228 DATEAVSDIRDADIPNMLIVDDFQDATLAGFALLEALHNRGTRLLLVGNPDEAVQTFRGS 287

Query: 266 IPTAIWNTITEKSTNITSSNT---TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            P  ++N    +                +      +         +D + L      +  
Sbjct: 288 YPEYLFNEAQSRMGARLERIENLYAACENDGAQTIRNASNRQSVHDDYRTLVATRVSLSI 347

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQ--------KCFSDVALIEADNEREEAISI 374
            S   +   LP     MRN                         V      +  EE   +
Sbjct: 348 ASTEPTDVPLPERPGKMRNIPGAMPIEALPSGNTDACVMPADGSVETALYRSSSEELDDV 407

Query: 375 AIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLHSSIL 430
              ++    +  +     A+IT D    R     L   G+ +  S+   PL        L
Sbjct: 408 VWKIKTEHLQRSREWNDMAVITHDNATVRAFGERLRADGVPVRYSSVTRPLKDEPFVQGL 467

Query: 431 TSLLNA--------IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
            +L+               D  A  + ++  +A                E    R     
Sbjct: 468 FALIELAELKRRTIAASGMDPQAAGSYIRSRVASIMASPLITVGGDRQHEGRPARLASVE 527

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ------------- 529
             +  L SL       +       +      E+   L  L+ D                 
Sbjct: 528 SAMHALASLAEIVGDDEIRAQDSANMAKTDVEQQSSLLRLMADWHEYMAKCHAISDEGQH 587

Query: 530 -----------------------------CITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                                         I  + +   +        S+      T   
Sbjct: 588 DGGHDGDQNDPVFDMDALYVLLLEGNTDRVIDTIASVTGSDPQVKAFASLWKVLDKTCEA 647

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA-------------------N 601
              + L E + + +  +   GK        +  + +   A                   +
Sbjct: 648 EHKLVLREPQYVLDCAWRACGKAEIWQRVALEHSAAGRAANDRLDAAMRLFNYASGGESS 707

Query: 602 AIEWIDIITRLIDG--------ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                  I   ++         +++         + +     +   +++ + L  L +G 
Sbjct: 708 GEFAARTIEAFMEQVRSLTIEADSLAHTAPIDQAVTLTTPAGAAGRHWNLVFLPSLQQGQ 767

Query: 654 WPKNTAKNPFLSRVMQSDLNLK----------TAEKYIGQAAH-------DFEMANGTRH 696
           WP  T +N        +D+ L           T ++    AA                  
Sbjct: 768 WPNLTPRNTLFGGEELADVMLHGELSDTVTTSTGKRDAQLAAVLASEQKSFLVALTRADE 827

Query: 697 L-IYTRSLRENNIPT-----IASRWLQRLLVLGGTDFFDNLKKRGQCYLDW---TRKLDY 747
             + +  L ++++P+         W  R                   Y       R L  
Sbjct: 828 CAVMSAVLNDDHVPSDFLYGYVPEWFDRDRDADMERREYAAIGSQGDYAGLESDPRGLIA 887

Query: 748 TTKQPHYKRP--KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
             +      P   P     A+      S   +  +     +    + L      +    R
Sbjct: 888 AARSVLAMEPSNSPKARDAAETLALLASRGIRAADPDCWPFVEEPVSLAERETIQDGKTR 947

Query: 806 -TDRGTLFHNIITELIK 821
            +D  TL  + +  L  
Sbjct: 948 QSDVVTLSPSAVDNLWA 964



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 70/722 (9%), Positives = 169/722 (23%), Gaps = 104/722 (14%)

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
             R      + L    S M     L   + + +    D A +   +  +++  +   +   
Sbjct: 513  DRQHEGRPARLASVESAMHALASLAEIVGDDEIRAQDSANMAKTDVEQQSSLL-RLMADW 571

Query: 382  LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS-SILTSLLNAIFKL 440
             +   K  A+             +  +     D+ A   L    ++  ++ ++ +     
Sbjct: 572  HEYMAKCHAI---SDEGQHDGGHDGDQNDPVFDMDALYVLLLEGNTDRVIDTIASVTGSD 628

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
                A A+L K          K + R    +   A R    +     +            
Sbjct: 629  PQVKAFASLWKVLDKTCEAEHKLVLREPQYVLDCAWRACGKAEIWQRVALEHSAAGRAAN 688

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
            +           +   +         I   +  + +     +S      I     LT   
Sbjct: 689  DRLDAAMRLFNYASGGESSGEFAARTIEAFMEQVRSLTIEADSLAHTAPIDQAVTLTTPA 748

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                    H  L  L   ++G+  +      +      +   +     ++  +   +   
Sbjct: 749  ---GAAGRHWNLVFLPSLQQGQWPNLTPRNTL--FGGEELADVMLHGELSDTV-TTSTGK 802

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR-----VMQSDLNLK 675
            +  + + +         +          ++  +   +   +              D +++
Sbjct: 803  RDAQLAAVLASEQKSFLVALTRADECAVMSAVLNDDHVPSDFLYGYVPEWFDRDRDADME 862

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
              E     +  D+         +   +     +    S            +    L  RG
Sbjct: 863  RREYAAIGSQGDYAGLESDPRGLIAAARSVLAMEPSNSP-----KARDAAETLALLASRG 917

Query: 736  QCYLDW--TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                D      ++        +  +     ++   T S S +  L   P           
Sbjct: 918  IRAADPDCWPFVEEPVSLAERETIQDGKTRQSDVVTLSPSAVDNLWACPVCWMLENR--- 974

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN----HLMKQIIDSHFEKE--- 846
                  +     T+ G+L H +  +  +  ++             +  I +  + +    
Sbjct: 975  --FSGPRMGSVATNFGSLIHTVAQKATEAGLDMPEQHTAISDMDNIDAITEQMYAEYERL 1032

Query: 847  ------NLPPHIDIIWRHL-------FHKISHSFLEH----------EEKIQSSIEKIFV 883
                     P                   I+  F++           +      + K   
Sbjct: 1033 RGDLNGITDPAQRYQALKKDEQAKDALRNIATYFVQSNHGDYPIKNNDAFSVGKLTKAEP 1092

Query: 884  NIPAKMAIE----------------------------------------SIGIHLTGFAD 903
             +      +                                         + + LTG  D
Sbjct: 1093 ELKFTAKFDFDDILAAYNAMDGIHAISRNELIAIMGTLVGGWPQTGMSEHLTVRLTGRID 1152

Query: 904  RIDLL--KSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
            R++      G   V + DYKTG +P  E      D QL      L     S +   +   
Sbjct: 1153 RVERRDMADGTQQVRLIDYKTGASPNGEGLFN--DLQLVCYQLGLVFPEGSGLHGAQAVA 1210

Query: 960  LF 961
              
Sbjct: 1211 AA 1212


>gi|154498367|ref|ZP_02036745.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC
           29799]
 gi|150272678|gb|EDM99856.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC
           29799]
          Length = 1206

 Score = 72.3 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 60/634 (9%), Positives = 134/634 (21%), Gaps = 88/634 (13%)

Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG---------TKGPIIIAGST 236
             +K     +               +   +R                      I++    
Sbjct: 340 ALVKDFEAAYAAEKERRGVLDFSDLEHMAVRLLVGEDGSPTPLAKQWSGRYDEIMVDEYQ 399

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
            +      + S ++   +G  +    D       +               T     +   
Sbjct: 400 DTNAVQNAIFSAISQ--DGRNLFMVGDVKQSIYRFRLADPTIFLEKYRTFTPYETAEEGE 457

Query: 297 AKLLDFLDIKREDVKRLGNVS-----------NEMYGRSMVISKSFLPPDTSDMRNTDIL 345
            + +      R   + L   +            EM   +                  ++ 
Sbjct: 458 PRRIILSKNFRSRAQVLEGANFIFRGIMSRSFGEMDYTADEALYPGASYPEGADYAVELD 517

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---------------NKKKSA 390
              +        D +  +   +  EA  +A  ++   D                      
Sbjct: 518 ALDLAAGGGDDEDESGEKTPRDLLEARFLAKRIKELKDGGFPVSDGEGGTRPAGYGDMVI 577

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           L+ +  ++       L    I  +  AG     T   S+  SLL  +      + + +++
Sbjct: 578 LVRSPNSVLHHYARALGERDIPWEADAGGDYFETTEVSVALSLLQIVDNPRQDVPLISVL 637

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
           + P+  F      + RA                                          +
Sbjct: 638 RSPVYGFTADRLAVLRAA--------------------------------------SPDT 659

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                  + A          +  L   +        +  +      T        +DE  
Sbjct: 660 DFYAALVKGAEEGGVDCAAFLAELEDLRFRSGDRNSHQLLWQIYDRTNLLGIFGAMDEGE 719

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
           K      +     L  L  +    G       + ++  +              +   + I
Sbjct: 720 K-----RQGNLLALCELARQFEAAGHKGLFGFLTYLTRLRDNGGKLAAPQAAREGGGVRI 774

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ------- 683
           L   +S+ L F  ++L GL   +   +  +       +         E+ I         
Sbjct: 775 LSIHKSKGLEFPIVLLSGLTRRLNRDDMQRPILFHPQLGVGPKRLDTERMIEYPTLARRA 834

Query: 684 -AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
            A             +   ++       I S  L R          D         L   
Sbjct: 835 VARQLEYEMMAEELRLLYVAMTRAKEKLILSCALTRGAADLRKLAEDAEYPADPQVLSGC 894

Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
           + +      P   RP       A       +  +
Sbjct: 895 QSVGQWVLLPVLTRPDAVAIRRAADYPLPIAAAE 928


>gi|260549135|ref|ZP_05823356.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
 gi|260407863|gb|EEX01335.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
          Length = 659

 Score = 72.3 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 65/572 (11%), Positives = 144/572 (25%), Gaps = 63/572 (11%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    Y     L    + I   T+RA  E+ +   +  G ++  L    +       
Sbjct: 37  KTIVARAAYLIDQGLSANQIQILTFTRRAASEIVARVEQHVGAQAKGL-RASTFHTFCMY 95

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +          + +    L + RL+     K  D +     E       +      
Sbjct: 96  LLRRNPQAFGLTQFSIIDRDDQLLMFRLLRG---KDKDNVLPKAAELCDLYSYARNTQSK 152

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
           L++ L   +      +     +  L       +     +            L   +  S 
Sbjct: 153 LSEALLKQLPEAYEYK---SQIAEL----MKTYEQRKRE---------RNFLDYDDILSI 196

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
           V   +    A    +  G    +++     + P    L+  +        +    D    
Sbjct: 197 VAVHLQNSEALTNWV-AGFCQALLVDEMQDTNPLQWALLQPLIGKVK---LFCVGDDAQS 252

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +     ++ +                  ++  LD+     + + ++SN +   S + 
Sbjct: 253 IYGFRGADFENIHSFKERIPD---------AVIHTLDLNYRSTQEILDLSNWLLAHSPID 303

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
            +  L       +                    L    NE EEA  IA  L     +   
Sbjct: 304 YQKQLQAHRGKGQKPQ-----------------LHLFGNEFEEANWIAQDLIERHQQGAN 346

Query: 388 KS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                ++      AR ++       I      G+ L  + H   + SLL  +    D +A
Sbjct: 347 WYDHMVLVRSGYSARYLEGAFIAAEIPYRFIGGVKLLESAHVKDVLSLLRIVSNPQDDLA 406

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
               +       G  +   S+    L  ++    +        K  +            +
Sbjct: 407 WMRFLT---LWDGIGDVGASKLAQELMSISEVEERCQRLERHGKVPLQ--------AILI 455

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                 L +  +    L +D + + +      K           +    +   +  + + 
Sbjct: 456 LKQLDVLQQHVEASIGLALDALSEQLEQNYKTKDWSRRARDFDLVKQLARKHASLGEFLE 515

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                 +     E+ G         I      
Sbjct: 516 EYVLEPISISEIEKAGDDDLVTLITIHSAKGA 547


>gi|153006283|ref|YP_001380608.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152029856|gb|ABS27624.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 682

 Score = 72.3 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 68/706 (9%), Positives = 157/706 (22%), Gaps = 114/706 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     + G             DV    F +  L         + 
Sbjct: 61  QILAVTFTNKAAGEMRERVAALAGPPGV---------DVFVSTFHSFGLWLLKEEHKAAG 111

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE-- 163
           + +   +            D              +   +  + A+ +  ++   +     
Sbjct: 112 LPKRFAIC-----------DAGDQAALVKRCMREVKVDDRAFDAQRVLALVSRAKNAGKK 160

Query: 164 -KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI-----ALMRA 217
                      +                    + + L    +                 A
Sbjct: 161 RIVPGAEGQGDDYDLVA---------SEVYPRYEQALRAQRSVDFDDLIAKPVELLARDA 211

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           E    ++     +++     +  A   L+  +A       V    D       W     +
Sbjct: 212 EVRRRLQRRFRYLLVDEYQDTNVAQLELLKHLAGERRN--VCAVGDDDQAIYGWRGAEVR 269

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      +      P     +L          +     V  +   R              
Sbjct: 270 NILRFERHF-----PGAREIRLEQNYRSTGRILDCANAVIAKNAERKPK----------- 313

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITA 394
                     ++         V ++    E +EA  +A  L   L +  +     A++  
Sbjct: 314 ----------RLFTAAGPGEPVRVLALAQEEDEARFVAEELSR-LRQEGRPWSHFAILFR 362

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  L    +   +  G           L + L      +D +++A +V  P 
Sbjct: 363 LNAQSRPIEEALREASMPYVMHGGPAFFDRAEVRDLLAYLKVCVSPHDEVSLARIVNVPA 422

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
              G        A      V                                      + 
Sbjct: 423 RGIGDASLERVHAWAVARGVH----------------------------------LFDAL 448

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                   L     + +   V       +  G   +++  +  V  +             
Sbjct: 449 GRAAEIPELPKGAPERMAAFVALIERYRARFGEGRVAEAARALVAEVDLYGHARASVQSF 508

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
              + +   L  +   +   G   +         + RL      +    K   + ++   
Sbjct: 509 EAGQRKVDALDGILRSL--EGYEQRTARPSIATWLQRLALDSRSEEDPAKDDGITLMTLH 566

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L G+ E + P    +        +  L      +   +           
Sbjct: 567 AAKGLEFPVVFLVGVEEDLLPCAGIQGEARDLDEERRLAYVGITRARERLYLTRAA---- 622

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                TR+ R   +P   SR+L  L          +        + 
Sbjct: 623 -----TRTKRGKLLPRTPSRFLGDLPPDAHEQVDPDALSSSPAQVA 663


>gi|328857036|gb|EGG06154.1| hypothetical protein MELLADRAFT_87299 [Melampsora larici-populina
           98AG31]
          Length = 1091

 Score = 72.3 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 72/698 (10%), Positives = 173/698 (24%), Gaps = 80/698 (11%)

Query: 38  PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LS 96
            ++P  LA   +   T +A  E+++    + G K     ++ +   V           + 
Sbjct: 92  GIDPKDLA---VVTFTNKAANEMKNRLYVLLGAKLANEIVMGTFHGVCVRFLRQHGSKVG 148

Query: 97  YNLNPPVSNIQRLLELAR----------------LILIWRNKLPDIIKDLYPESPLSLPI 140
              N  + + ++ L   +                L+      L D +     +       
Sbjct: 149 LKANWVICDRKQQLAYCKHVLKDPKVKARMAGSVLLKFTDESLLDYVSKRKSKGEAFEAC 208

Query: 141 SPANAIWLAKNLADIIDIIET--EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                      L D  +          ++DL  L                     Y    
Sbjct: 209 QKTKKDPFTNELFDAYNSALRDDNCLDFDDL--LTYGFVRHHM------------YTRLH 254

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
           L     +S       L R   + +       ++I     +     ++M  +A      IV
Sbjct: 255 LPAHIVASFACISERLFRCHPQVISY--IRHVLIDEFQDTNVVQYQMMKHMAYRGAVTIV 312

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYS-THP-------QYSLAKLLDFLDIKREDV 310
               D       W +    +             HP             L   +    +  
Sbjct: 313 ---GDPDQGIYGWRSAEVGNLMRMREELPLKLAHPKCISFCCAARYYSLHQKVKHGSDFD 369

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
           + L          S + + +     +    +  +    +   +K   +   I        
Sbjct: 370 ECL----------SSLYTDTQRIDKSLFTSHPKVSLPVLQAFRKPPDESEFI-------- 411

Query: 371 AISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
              I   +  +  + N    +++     L+R V+  L    I   +  G+          
Sbjct: 412 VREIQRLIAHTGGQLNFNDFSILIRYGALSRNVEAALQAAHIPTRMVGGVKFFERTEVKD 471

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK----YLSRAKNALELVALRGNKNSYDI 485
           + + L          A   +   P    G          ++A  +  +  +R        
Sbjct: 472 IIAYLQLADNPMFVPAFDRIANVPARAIGAVTIKAIKEAAKASESNPMEIMRRVVRGDSF 531

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP----LVTYKTNK 541
             L      +              +R      E+   L+  +          L       
Sbjct: 532 PGLSQTHRSKFKKFLCVIGKIQSMARSGSSIVEIIDTLIAQVNYVAHLQAPSLSDADERL 591

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG---KTLSSLFSKIIETGSCI 598
            +     S +   +   +   +           L ++  G   + L+ L  + + +    
Sbjct: 592 QNVEELKSFALHLEGGSSPSSSQPTQSGEDTDTLDWKVLGNDDEALADLEIEPLNSDEEP 651

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                   + +             + +  + I     S+ L +  + +  +  G++P   
Sbjct: 652 TGLRRFLTESMLSTDTEAEEGKANKNAPKVTISTCHASKGLEWPVVFVPAVENGIFPFYR 711

Query: 659 AKNPFLSRVMQSDLNLK-TAEKYIGQAAHDFEMANGTR 695
            K+    +  +  L +  T  + +   +H  +   G  
Sbjct: 712 CKDEESEKEERRLLFVAMTRAQGLLYLSHCGQRMAGAE 749


>gi|260556195|ref|ZP_05828414.1| ATP-dependent DNA helicase PcrA [Acinetobacter baumannii ATCC
           19606]
 gi|260410250|gb|EEX03549.1| ATP-dependent DNA helicase PcrA [Acinetobacter baumannii ATCC
           19606]
          Length = 688

 Score = 72.3 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 65/572 (11%), Positives = 144/572 (25%), Gaps = 63/572 (11%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    Y     L    + I   T+RA  E+ +   +  G ++  L    +       
Sbjct: 66  KTIVARAAYLIDQGLPANQIQILTFTRRAASEIVARVEQHVGAQAKGL-RASTFHTFCMY 124

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +          + +    L + RL+     K  D +     E       +      
Sbjct: 125 LLRRNPQAFGLTQFSIIDRDDQLLMFRLLRG---KDKDNVLPKAAELCDLYSYARNTQSK 181

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
           L++ L   +      +     +  L       +     +            L   +  S 
Sbjct: 182 LSEALLKQLPEAYEYK---SQIAEL----MKTYEQRKRE---------RNFLDYDDILSI 225

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
           V   +    A    +  G    +++     + P    L+  +        +    D    
Sbjct: 226 VAVHLQNSEALTNWV-AGFCQALLVDEMQDTNPLQWALLQPLIGKVK---LFCVGDDAQS 281

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +     ++ +                  ++  LD+     + + ++SN +   S + 
Sbjct: 282 IYGFRGADFENIHSFKERIPD---------AVIHTLDLNYRSTQEILDLSNWLLSHSPID 332

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
            +  L       +                    L    NE EEA  IA  L     +   
Sbjct: 333 YQKQLQAHRGKGQKPQ-----------------LHLFGNEFEEANWIAQDLIERHQQGAN 375

Query: 388 KS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                ++      AR ++       I      G+ L  + H   + SLL  +    D +A
Sbjct: 376 WYDHMVLVRSGYSARYLEGAFIAAEIPYRFIGGVKLLESAHVKDVLSLLRIVSNPQDDLA 435

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
               +       G  +   S+    L  ++    +        K  +            +
Sbjct: 436 WMRFLT---LWDGIGDVGASKLAQELMSISEVEERCQRLERHGKVPLQ--------AILI 484

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                 L +  +    L +D + + +      K           +    +   +  + + 
Sbjct: 485 LKQLDVLQQHVEASIGLALDALSEQLEQNYKTKDWSRRARDFDLVKQLARKHASLGEFLE 544

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                 +     E+ G         I      
Sbjct: 545 EYVLEPISISEIEKAGDDDLVTLITIHSAKGA 576


>gi|163855258|ref|YP_001629556.1| hypothetical protein Bpet0953 [Bordetella petrii DSM 12804]
 gi|163258986|emb|CAP41285.1| recB [Bordetella petrii]
          Length = 265

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 63/185 (34%), Gaps = 15/185 (8%)

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
            T   S + +L + P    A+ ILK+               GT  H       + +++ +
Sbjct: 5   FTVRASSLAELFDCPARFEAKHILKMRMPSS-----AAARLGTAIHAGTAAFDQAKLDGS 59

Query: 828 T---PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                +    +  ++    E+ +           +   +   +     +I    + + V 
Sbjct: 60  PITADDAAGALVDVLHDTMEEVDWDGSQPADAEKVALALHTRYCA---EIAPQQDYVAVE 116

Query: 885 IPAK-MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ---KLIDPQLSLE 940
           +  + + I  +G+ LTG  DR+  L  G + I D K+G        +       PQ+ + 
Sbjct: 117 LTCERLEITDLGLALTGTTDRVRRLPDGQLGIADLKSGKTAVGADGRVATAGHGPQMGVY 176

Query: 941 AAALK 945
               +
Sbjct: 177 ELLAE 181


>gi|258511065|ref|YP_003184499.1| hypothetical protein Aaci_1073 [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
 gi|257477791|gb|ACV58110.1| hypothetical protein Aaci_1073 [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
          Length = 310

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 74/244 (30%), Gaps = 22/244 (9%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             + S I      P       + +L               GT +H  +     +R   +  
Sbjct: 5    LTHSRIAMRQTCPTKERLWYVERLRPREVSW----ALSIGTAWHTGLEVW--QRGEADED 58

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
                     +D    + +   +   + R     +    + H +  +     + V    ++
Sbjct: 59   GAVAAGLATLDWIRPENDEEAYKLQLERIRTEVMIRFAIRHFKPRRL----VAVEKQFEI 114

Query: 890  AI-------ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
             I       +S    L+G  D +   + G + I + KT  + ++      +  QL+L   
Sbjct: 115  PILNPATGRKSRKFRLSGKIDALCEDEDGNLWILENKTTASIEQFKQSYGMSQQLTLYVY 174

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
            A        +  R +A      L++        N ++  + ++  ++ L           
Sbjct: 175  AASR-----VFGRPIAGSVVRALQKSRMEPKHRNGEQVETWEDFRDRLLTEYEANPDKYL 229

Query: 1003 NGEQ 1006
            + ++
Sbjct: 230  SEDE 233


>gi|121607642|ref|YP_995449.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121552282|gb|ABM56431.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
          Length = 1140

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 86/850 (10%), Positives = 200/850 (23%), Gaps = 71/850 (8%)

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG-MWWLLAADFLKIAS 192
              L   +  A A  LAKNL       +    +   L   + +          A   +  S
Sbjct: 300  DRLRQALFVATADRLAKNLEK-FAAAQEAAPELRRLLDARRQHAAWQHQQSMARLTRCLS 358

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAE--------HLMKGTKGPIIIAGSTGSIPATAR 244
              +     +         + +  R  A+          +      +++     + P   +
Sbjct: 359  AQFAAVKNQHGWVDMNDVERSAQRMLADPVLSGWVQQRLDARIRHLLVDEFQDTNPLQWQ 418

Query: 245  LMSTVANHPNGAI-------VLPGLDCHIPTAIWNTITE--KSTNITSSNTTYSTHPQYS 295
             +    +   GA        V    D       +            T             
Sbjct: 419  ALHAWLSGYAGAGGGGAAPSVFIVGDPKQSIYRFRRAEPQVFMAAQTFVRNGLGGDLLSC 478

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
                 +   +     + +G    +          +      + +R   IL     +    
Sbjct: 479  DHTRRNATGVTAAVNQVMGQAQAQQEISGFRAHSTESQDPGAVLRLPAILPAPARDGADA 538

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDE------------NKKKSALITADRNLARRVK 403
               +A  ++  E          +R                    +  ++   R+    ++
Sbjct: 539  DP-LAWRDSLTEPRHEPEETRRMRECAQAAAWVAAQIAAGTPPGQVLVLARKRDRLSAMQ 597

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L    +         L        L +LL+A+      +++A  +K PL   G     
Sbjct: 598  DALRALHLPCVQPEKADLFDAPEVQDLVALLDALVSTGHDLSLARALKSPLFGLGDEALA 657

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                       A               L+  R     +        ++            
Sbjct: 658  ALARLRREPGHA---------ASSWYELLQKRELLTGDLLAPGPVLAQYKAWVDAWPPHD 708

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
              H +     ++             ++    +  ++         +          +   
Sbjct: 709  ALHAIYQHADVLARFAAAAPAAQRQAVQAQLRALLSAALQYDGGRYLTPYAFVRALKKGG 768

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            L +      +    +  +  + ++    L+     +P   ++  + +L     R++    
Sbjct: 769  LRAPGRVDAQAIRLLTVHGAKGLEAHCVLLLDTDTRPPKAETMGV-LLDWPGERVVPASF 827

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
            + L            A         + +LNL             +      RH +   S+
Sbjct: 828  IFLASETHPPPSAEAALAAEQQARQREELNLL------------YVAMTRARHSLALSSV 875

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
            +          W QRL  L          +        T     ++  P           
Sbjct: 876  QP--AHDAPGSWWQRLEPLAAPVQMPAPGEPTTASAASTSPSSPSSPTPPAAGDTHEHFT 933

Query: 764  EAQPRTYSF---SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
             A+    S    + +   + D  +   R   +           D     T     + +L+
Sbjct: 934  LAELPPPSAYLSTPLPAHLPDHLSTPLRPAPQGHAPE--NHGTDPGTPATRLGEAMHQLL 991

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
            ++      P      +    +   +      I +    L  + +   L            
Sbjct: 992  EQAGVAGAPLAELRAQGWPAARLARLAQDFDISMDAAWLAAQTAQRILTGAGAWAWDATV 1051

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDL----LKSGFVDITDYKTGDNPKKETAQKLIDPQ 936
            +  +   +  +   G  L    DR+       +     + DYK+   P     Q  +  Q
Sbjct: 1052 VD-HASNEALLRDQGQSL--RLDRLVHCRHPAERAGWWVLDYKSAAAP---ERQPALLAQ 1105

Query: 937  LSLEAAALKA 946
            L    AA++ 
Sbjct: 1106 LQRYRAAVQR 1115


>gi|330937394|gb|EGH41379.1| DNA-dependent helicase II [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 727

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 62/708 (8%), Positives = 163/708 (23%), Gaps = 163/708 (23%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           ++ R L LA        +L+ R      ++   P S LS+  +   A  +   +  ++  
Sbjct: 23  SLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  ISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRLVKRVMRELGLDEQRWPA 141

Query: 198 RLVE---LNASSPVGY----------------------------------QIALMRAEAE 220
           R  +                                                 L+RA   
Sbjct: 142 RQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEIACQRAGVIDFSELLLRALDL 201

Query: 221 HLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            +++     +       +  +A   +  +V+   D       W 
Sbjct: 202 WRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++ +  SS+   +                              +       +    
Sbjct: 260 GAKIENIHQYSSDFPDTE--------------------------VIRLEQNYRSTASILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +   + N+  L  ++         + L  A NE +EA  +   +  +L    ++   A
Sbjct: 294 AANGLIINNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + +  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKSAMAYMRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                               +  ++        +      +     
Sbjct: 414 NVP-----------------------ARGIGEKTVEAIREHARHADVSMWEAMRLLVANK 450

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            L+          ++ I      ++                    L +     +      
Sbjct: 451 GLTGRAATALGGFIELIENLAAKVMEMP-----------------LHLMTQTVIEQSGLI 493

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKS 625
                   E+G+       +++           + +       +             E  
Sbjct: 494 TYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHE 553

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++ ++    ++ L F  + L G+ EG++P                ++L+   +   +  
Sbjct: 554 DSIQLMTLHSAKGLEFPHVFLVGMEEGLFP--------------HKMSLEEPGRLEEERR 599

Query: 686 HDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             +       + L+ T +       +     + R +          ++
Sbjct: 600 LAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVR 647


>gi|308186304|ref|YP_003930435.1| DNA helicase IV [Pantoea vagans C9-1]
 gi|308056814|gb|ADO08986.1| putative DNA helicase IV [Pantoea vagans C9-1]
          Length = 684

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 64/257 (24%), Gaps = 17/257 (6%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            + +    ++A +E+ +                ++   +              ++   S+
Sbjct: 243 QILLLAFGRQAAEEMNARIQSRLSAGDI---QARTFHSLALHIIREGSNKQPVISKLESD 299

Query: 106 IQ-RLLELARLILI-----------WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
              R   L R               WR  L D ++   PE P       AN   LA  L 
Sbjct: 300 ADARRTLLLREWRQQCHEKKAMANGWRQWLRDELEWEVPEGPFWEDERLAN--RLASRLE 357

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + ++         + A   E+    +      +    K W   L E  A    G    
Sbjct: 358 RWLGLMRMHGGAQAAMIADVPEEIRDHFSKRIKLMAPLLKAWKSALKEEGAVDFSGLIHQ 417

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            +    +         I++       P  A L+S +        +    D       ++ 
Sbjct: 418 AIAILEKGRFISPWKHILVDEFQDISPQRAALLSALRKQNKRTALFAVGDDWQAIYRFSG 477

Query: 274 ITEKSTNITSSNTTYST 290
                T           
Sbjct: 478 AEMTLTTAFHHYFGEGD 494



 Score = 40.3 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 44/422 (10%), Positives = 97/422 (22%), Gaps = 53/422 (12%)

Query: 154 DIIDIIETEEKKWEDLHALKNEK-----YGMWWLLAADFLKIASKYWTERLVELNASSPV 208
            ++DI       W +L  L  ++     +G  W     F     + W    +E++A    
Sbjct: 42  QLLDIACKRGLVWGELEFLLADEKVVRLHGTEWQETQRFHHYLLQAWQNWSLEMSAVCRE 101

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
             Q                         G+  A  R ++          +L   D     
Sbjct: 102 VLQSLRDEI-------------------GTFSAQDRWLNRHELQALKTKILKQFD----- 137

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV--SNEMYGRSMV 326
                         +       +  +    L       R+  +       +      + V
Sbjct: 138 -----ALPMPFTRLNDFPDCRDNLAFCQRWLDQGESALRQRNRDWTAAMLTRYQSFFASV 192

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL------RM 380
            S          + N +     +       + V +  A    E  ++ A  +      R 
Sbjct: 193 ESTPLNQSQCEAVVNGEDSLLVLAGAGSGKTSVLVARAGWLMERRLASADQILLLAFGRQ 252

Query: 381 SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
           + +E   +     +  ++  R    L    I          +     S L S  +A    
Sbjct: 253 AAEEMNARIQSRLSAGDIQARTFHSLALHII------REGSNKQPVISKLESDADA---- 302

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
                +    +    +         +         +       D      L         
Sbjct: 303 -RRTLLLREWRQQCHEKKAMANGWRQWLRDELEWEVPEGPFWEDERLANRLASRLERWLG 361

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                   Q+ +  +  E         ++ + PL+    +     G +  S      +  
Sbjct: 362 LMRMHGGAQAAMIADVPEEIRDHFSKRIKLMAPLLKAWKSALKEEGAVDFSGLIHQAIAI 421

Query: 561 LQ 562
           L+
Sbjct: 422 LE 423


>gi|302187828|ref|ZP_07264501.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae 642]
          Length = 727

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 62/708 (8%), Positives = 163/708 (23%), Gaps = 163/708 (23%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           ++ R L LA        +L+ R      ++   P S LS+  +   A  +   +  ++  
Sbjct: 23  SLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  ISPAGMWGGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRLVKRVMRELGLDEQRWPA 141

Query: 198 RLVE---LNASSPVGY----------------------------------QIALMRAEAE 220
           R  +                                                 L+RA   
Sbjct: 142 RQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEIACQRAGVIDFSELLLRALDL 201

Query: 221 HLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            +++     +       +  +A   +  +V+   D       W 
Sbjct: 202 WRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++ +  SS+   +                              +       +    
Sbjct: 260 GAKIENIHQYSSDFPDTE--------------------------VIRLEQNYRSTASILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +   + N+  L  ++         + L  A NE +EA  +   +  +L    ++   A
Sbjct: 294 AANGLIINNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + +  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                               +  ++        +      +     
Sbjct: 414 NVP-----------------------ARGIGEKTVEAIREHARHADVSMWEAMRLLVANK 450

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            L+          ++ I      ++                    L +     +      
Sbjct: 451 GLTGRAATALGGFIELIENLAAKVMEMP-----------------LHLMTQTVIEQSGLI 493

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKS 625
                   E+G+       +++           + +       +             E  
Sbjct: 494 TYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHE 553

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++ ++    ++ L F  + L G+ EG++P                ++L+   +   +  
Sbjct: 554 DSIQLMTLHSAKGLEFPHVFLVGMEEGLFP--------------HKMSLEEPGRLEEERR 599

Query: 686 HDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             +       + L+ T +       +     + R +          ++
Sbjct: 600 LAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVR 647


>gi|330952409|gb|EGH52669.1| DNA-dependent helicase II [Pseudomonas syringae Cit 7]
 gi|330970255|gb|EGH70321.1| DNA-dependent helicase II [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 727

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 62/708 (8%), Positives = 163/708 (23%), Gaps = 163/708 (23%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           ++ R L LA        +L+ R      ++   P S LS+  +   A  +   +  ++  
Sbjct: 23  SLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  ISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRLVKRVMRELGLDEQRWPA 141

Query: 198 RLVE---LNASSPVGY----------------------------------QIALMRAEAE 220
           R  +                                                 L+RA   
Sbjct: 142 RQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEIACQRAGVIDFSELLLRALDL 201

Query: 221 HLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            +++     +       +  +A   +  +V+   D       W 
Sbjct: 202 WRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++ +  SS+   +                              +       +    
Sbjct: 260 GAKIENIHQYSSDFPDTE--------------------------VIRLEQNYRSTASILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +   + N+  L  ++         + L  A NE +EA  +   +  +L    ++   A
Sbjct: 294 AANGLIINNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + +  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                               +  ++        +      +     
Sbjct: 414 NVP-----------------------ARGIGEKTVEAIREHARHADVSMWEAMRLLVANK 450

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            L+          ++ I      ++                    L +     +      
Sbjct: 451 GLTGRAATALGGFIELIENLAAKVMEMP-----------------LHLMTQTVIEQSGLI 493

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKS 625
                   E+G+       +++           + +       +             E  
Sbjct: 494 TYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHE 553

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++ ++    ++ L F  + L G+ EG++P                ++L+   +   +  
Sbjct: 554 DSIQLMTLHSAKGLEFPHVFLVGMEEGLFP--------------HKMSLEEPGRLEEERR 599

Query: 686 HDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             +       + L+ T +       +     + R +          ++
Sbjct: 600 LAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVR 647


>gi|28872621|ref|NP_795240.1| DNA helicase II [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28855877|gb|AAO58935.1| DNA helicase II [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 727

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 65/727 (8%), Positives = 164/727 (22%), Gaps = 164/727 (22%)

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
           SL D   +   A L     L    S   R+L         R      ++   P S LS+ 
Sbjct: 11  SLNDAQRQAVAASLGRQLVLAGAGSGKTRVLV-------HRIAWLMQVEQASPHSVLSVT 63

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL----------------- 182
            +   A  +   +  ++  I          H L +      W                  
Sbjct: 64  FTNKAAAEMRHRIEQLMG-ISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQ 122

Query: 183 ----LAADFLKIASKYWTERLVE---LNASSPVGY------------------------- 210
                    L +  + W  R  +                                     
Sbjct: 123 RLVKRVMRELGLDEQLWPARQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEAA 182

Query: 211 ---------QIALMRAEAEHLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHP 253
                       L+RA                    +++     +       +  +A   
Sbjct: 183 CQRAGVIDFSELLLRALDLWRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGG 242

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
           +  +V+   D       W     ++ +  S +   +                        
Sbjct: 243 DSLMVV--GDDDQSIYGWRGAKIENIHQYSDDFPDTE----------------------- 277

Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
                 +       +      +   + N+  L  ++         + L  A NE +EA  
Sbjct: 278 ---VIRLEQNYRSTASILKAANGLIINNSGRLGKELWTDVGDGELINLYAAFNEHDEARY 334

Query: 374 IAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
           +   +  +L    ++   A++      +R ++  L R  I   I  G             
Sbjct: 335 VVETIESALKTGISRNDIAILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAM 394

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
           + +  +    +  A+  ++  P                               +  ++  
Sbjct: 395 AYMRLLEGRGNDAALERVINVP-----------------------ARGIGEKTVEAIREH 431

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
                 +      +      L+          ++ I      ++                
Sbjct: 432 ARHADVSMWEAMRLLVANKGLTGRAAGALGGFIELIENLSAKVMEMP------------- 478

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN-----AIEWI 606
               L +     +              E+G+       +++      + +          
Sbjct: 479 ----LHLMTQTVIEQSGLITYHEQEKGEKGQARVENLEELVSAARAFENHESDEELTPLA 534

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             +             E   ++ ++    ++ L F  + L G+ EG++P           
Sbjct: 535 AFLGHASLEAGDTQAQEHEDSIQLMTLHSAKGLEFPHVFLVGMEEGLFP----------- 583

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
                ++L+   +   +    +       + L+ T +       +     + R +     
Sbjct: 584 ---HKMSLEEPGRLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640

Query: 726 DFFDNLK 732
                ++
Sbjct: 641 ALIQEVR 647


>gi|126640515|ref|YP_001083499.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii
           ATCC 17978]
 gi|126386399|gb|ABO10897.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii
           ATCC 17978]
          Length = 659

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 65/572 (11%), Positives = 144/572 (25%), Gaps = 63/572 (11%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    Y     L    + I   T+RA  E+ +   +  G ++  L    +       
Sbjct: 37  KTIVARAAYLIDQGLPANQIQILTFTRRAASEIVARVEQHVGAQAKGL-RASTFHTFCMY 95

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +          + +    L + RL+     K  D +     E       +      
Sbjct: 96  LLRRNPQAFGLTQFSIIDRDDQLLMFRLLRG---KDKDNVLPKAAELCDLYSYARNTQSK 152

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
           L++ L   +      +     +  L       +     +            L   +  S 
Sbjct: 153 LSEALLKQLPEAYEYK---SQIAEL----MKTYEQRKRE---------RNFLDYDDILSI 196

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
           V   +    A    +  G    +++     + P    L+  +        +    D    
Sbjct: 197 VAVHLQNSEALTNWV-AGFCQALLVDEMQDTNPLQWALLQPLIGKVK---LFCVGDDAQS 252

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +     ++ +                  ++  LD+     + + ++SN +   S + 
Sbjct: 253 IYGFRGADFENIHSFKERIPD---------AVIHTLDLNYRSTQEILDLSNWLLAHSPID 303

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
            +  L       +                    L    NE EEA  IA  L     +   
Sbjct: 304 YQKQLQAHRGKGQKPQ-----------------LHLFGNEFEEANWIAQDLIERHQQGAN 346

Query: 388 KS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                ++      AR ++       I      G+ L  + H   + SLL  +    D +A
Sbjct: 347 WYDHMVLVRSGYSARYLEGAFIAAEIPYRFIGGVKLLESAHVKDVLSLLRIVSNPQDDLA 406

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
               +       G  +   S+    L  ++    +        K  +            +
Sbjct: 407 WMRFLT---LWDGIGDVGASKLAQELMSISEVEERCQRLERHGKVPLQ--------AILI 455

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                 L +  +    L +D + + +      K           +    +   +  + + 
Sbjct: 456 LKQLDVLQQHVEASIGLALDALSEQLEQNYKTKDWSRRARDFDLVKQLARKHASLGEFLE 515

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                 +     E+ G         I      
Sbjct: 516 EYVLEPISISEIEKAGDDDLVTLITIHSAKGA 547


>gi|320593539|gb|EFX05948.1| ATP-dependent DNA helicase [Grosmannia clavigera kw1407]
          Length = 1099

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 60/488 (12%), Positives = 134/488 (27%), Gaps = 61/488 (12%)

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            ++I     +      LM   A   N   V+   D       W +   K+      +   
Sbjct: 287 AVLIDEYQDTNGIQFELMKLFAQARNRITVV--GDPDQSIYGWRSAEIKNLFRFLQDYPG 344

Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
           +                             E Y  S  I  + L     D +        
Sbjct: 345 TD-----------------------EISLEENYRSSRSILDTSLQVIQQDQKRYQKSLLP 381

Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-----KSALITADRNLARRVK 403
           +           L   ++  +EA  I   +R ++    K       A++     L+R ++
Sbjct: 382 VHKKGTRP---VLRRLEDAHKEANWIVSEIRRAMLMCGKLLDHSDVAVLVRSAALSRPIE 438

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
             L + G+   +  G          +L   L  I++ ++  A++ ++  P    G     
Sbjct: 439 AALNKEGVPYRMIGGRKFFDRAEIKLLLDYLRVIYQPDNNEALSRVINVPRRGVGVNSLK 498

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
               +   E ++L     +  +   + + ++    +K               + +     
Sbjct: 499 SMLEQAECEKISL-WTLVTGYLRGDRQVQVNLKNAEKRLNEGLLGLVNGIRANTDTGEET 557

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE---- 579
            D   Q      T      S    L+  D+ + T             +  NL  E     
Sbjct: 558 RDD--QPRKKTFTLIQIIESILVRLNFRDYIEKTYAPEDEARWANVDEFKNLAREFMAKV 615

Query: 580 -EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            E +    L     E      +   +++  ++ L+       + +K   + I     ++ 
Sbjct: 616 GELEEEDQLPEVEGEEQEKETSVLGKFLATVS-LVSDADKASEDDKKPMVTISTIHAAKG 674

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L +  + +    +G  P + +                  E    +    F      + L+
Sbjct: 675 LEWPVVFIPAAYDGSLPHSRS------------------EDTDEERRLLFVAMTRAKCLL 716

Query: 699 -YTRSLRE 705
             + S+R 
Sbjct: 717 NISYSVRS 724


>gi|291549061|emb|CBL25323.1| recombination helicase AddA, Firmicutes type [Ruminococcus torques
           L2-14]
          Length = 1239

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 65/607 (10%), Positives = 157/607 (25%), Gaps = 86/607 (14%)

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMW-WLLAADFLKIASKYWTERLVELNASSPVGYQI 212
             +   +T  K    L     E +                ++    L E           
Sbjct: 325 RDMQEAQTAMKMLVLLVQAFAEAFSEKKRQRNLLDFSDMEQFALRILTEEKEG------- 377

Query: 213 ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-VLPGLDCHIPTAIW 271
            L+ +      +     ++I     S      ++++V+    G   +    D       +
Sbjct: 378 KLVPSAVAQEYQERFEEVMIDEYQDSNLVQETILASVSRESAGQNNLFMVGDVKQSIYRF 437

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                +      ++ +     +  +      LD        + + +N ++ + M      
Sbjct: 438 RLSRPELFMGKYNSYSTQESSRQRI-----DLDRNFRSRGEVLDSTNYIFRKLMRKEFGE 492

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALI--------EADNEREEAISIAIALRMSLD 383
           +  D     +      ++P+         L+         ++   EEA  IA  ++  L+
Sbjct: 493 IIYDDKAALHLGASFPELPDENVFTDQTELLLYNQTGLRSSEAREEEARMIAQRMKELLN 552

Query: 384 E--------------NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSS 428
                          + +   ++T        V    L   GI     +      T   S
Sbjct: 553 TGVVLDKETGEYRPVHYRDMVILTRSLQGWAEVFASILAEEGIPAYSVSREGYFETYEVS 612

Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
           +L   L  +      + +  ++  P A     E  + R     +L             + 
Sbjct: 613 VLLDYLKVLDNARQDLPLTAVLTSPFAGLTAAELSVIRLAYPNQLFYEAVEGFCSLSSE- 671

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                                      DK+ A+ + + + +    L  ++     T  + 
Sbjct: 672 ---------------------EIPETVDKKQAIQVQEKLRKFFEVLDHFREILPYTAIHD 710

Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            +++    T        L           +   + L         T      N + +I+ 
Sbjct: 711 LLAEIIDKTG-----YGLFISAMPGGAQRQANVEMLVEKARAFEGTSYKGLFNFVRYIEQ 765

Query: 609 ITR-LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR- 666
           + +  +D        E+  T+ I+   +S+ L F  + + G  +    ++   +  +   
Sbjct: 766 LKKYDVDYGEASIIDEQDDTVRIMSIHKSKGLEFPIVFVAGTGKQFNTQDLKGSIVIHPR 825

Query: 667 --------VMQSDLNLKTA-----------EKYIGQAAHDFEMANGTRH-LIYTRSLREN 706
                    ++      T            E    +    +      +  LI T SL+  
Sbjct: 826 NGVGIDVVDLEMRTKAPTFLKKMIQEKTKLENLAEELRVLYVAMTRAKEKLILTGSLKMG 885

Query: 707 NIPTIAS 713
                  
Sbjct: 886 EDGLEPY 892



 Score = 48.0 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 41/181 (22%)

Query: 796  IPHFKKDPDRTDRGTLFHNIIT--ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
            +   K+      RG+ +H  +   +  K+   +   E   L  Q       KE +     
Sbjct: 1048 MEEQKEGLTGASRGSAYHKFLELHDFSKEYTEELLKEEIELFYQAGR--LSKEMVD---- 1101

Query: 854  IIWRHLFHKISHSFLEHEEKIQ----SSIEKIFVNIPAKMAIES---------------- 893
                     I  +FL  E   +    +   K+    P  + + +                
Sbjct: 1102 ---CIRTKDIL-AFLNSESGRRMTQAAGNGKLRKEQPFVLGVPASEIYPEIYQDIQKRSQ 1157

Query: 894  --------IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
                      I + G  D     + G + + DYKT         ++L   QL   A AL+
Sbjct: 1158 EADENRKEETILIQGIIDVWFEEEDG-IVLLDYKTDRVRNASQLKELYHAQLDYYAQALE 1216

Query: 946  A 946
             
Sbjct: 1217 Q 1217


>gi|146284345|ref|YP_001174498.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri A1501]
 gi|145572550|gb|ABP81656.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri A1501]
          Length = 1182

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 80/911 (8%), Positives = 219/911 (24%), Gaps = 109/911 (11%)

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
             ++L     +                 +     L E  A+  +     L+    + L   
Sbjct: 297  LDELADQVADALPAGKQRLIALQVALLERLNRELPERKAAQRLLAFDDLLNRLDQALQGP 356

Query: 226  TKGPI-----------IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
                +           +I     + P    + + +      A +    D       +   
Sbjct: 357  VGEDLAASLRATYPLALIDEFQDTDPIQYAIFNRIYAKGRDASLCFVGDPKQAIYAFRGA 416

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
               +                +  +    L      +        +   R   +  +  P 
Sbjct: 417  DLATYMTAKQQADREPFNLPTNYRSTPELIAALNQLFDHPQPFAQPDLRYPPVGAADKPR 476

Query: 335  DTSDMRNTDILENK----IPNIQKCFSDVALIEADNEREEAISIAIALRMSLD------- 383
             +  +             + +      D A + A +    A  IA+ L  + +       
Sbjct: 477  ASLRLAEEGEAAPLSLVWLGDDPLGKGDAAQLAASDT---ARRIAVQLAAAAEGRAGFDK 533

Query: 384  ------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                        A++ A+   A  +  EL   G+         +  +  +  L ++L A 
Sbjct: 534  DGGFAPLKGGDIAVLVANHRQAGMIADELAARGVPSVRRGRDSVWRSEEAGELAAVLAAY 593

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD-------LKS 490
             +      +   +   L      +    +             +  + +          ++
Sbjct: 594  AEPGREGLLRHALATRLLGRSAADLARCQDDQHEWDAEREAAERYHQLWQQQGFMRVFRA 653

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
             + ++   ++    V   +   +       +     +   + PL+ +   +  + G  + 
Sbjct: 654  WLDEQAVAERLLARVDGERRLTNLLHLGELLQAESLLRPGLEPLLAWFNAQRGSEG--AG 711

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII---ETGSCIKANAIEWID 607
             +      +  + V +        L +             +    ++  C  A+    +D
Sbjct: 712  EEALLRLESDAERVQIVTIHTSKGLEYPLVFCPFLWDGKLLGKNQDSARCHDADGQPLLD 771

Query: 608  IITRLIDG------ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
            + +  ++       + V  +  + + + +    +   L++  + L    +     +   +
Sbjct: 772  LGSGELEDNLERARQEVFAEQLRLAYVALTRARDRLWLHWGPVSLPKAKKDGSLPDEGLH 831

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
                  +     L   +       H   +  G+  L   R +  ++          R   
Sbjct: 832  SSALAWLLHGRELPGEQPLTELGNHLASLNGGSLRLAIERLVATSDGRMACLPLESREAS 891

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
              G+                              +         +  ++S       +  
Sbjct: 892  TQGSS--------------------RAAPPEQLAQLNRSLYSAWRIGSFSGLAAGMHMEA 931

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------------------- 821
            P           +    F   P     GT  H I+ +  +                    
Sbjct: 932  PDRDALAMPDAGEPGSGFFAFPRGARAGTCLHAILEDWARGKGELAQLVEPALKAYGLPL 991

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDII-----WRHLFHKISHSFLEHEEKIQS 876
               +  T ++  +++  +D              +        +                +
Sbjct: 992  DWRDVATAQLERVLQTDLDGAGLTLASLLAARRLPELGFTFPVRELDVVRLRALLTDPAN 1051

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT-----------GDNPK 925
             +        A++  +S+   L GF D       G   I DYK+           G+   
Sbjct: 1052 GLAAPLREAAARLEFDSLKGFLKGFIDLTFEHG-GRWYIADYKSNWLGPDASYYGGERLL 1110

Query: 926  KETAQKLIDPQLSLEAAALK---AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982
            +  A +    Q  +   AL+       +     ++   FY+ L+   +            
Sbjct: 1111 QALAGEHYYLQYLIYLVALRRFLRQRLTDFRDEQLGGAFYLFLRGMPEAGVYFARPDDAL 1170

Query: 983  ADELSEKSLKN 993
             D L     + 
Sbjct: 1171 LDGLDRLFEEG 1181


>gi|207109601|ref|ZP_03243763.1| hypothetical protein HpylH_10419 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 173

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 21/192 (10%)

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           + TLE+R + FD +++   NE   P     + FL+  ++  LNL T         H +  
Sbjct: 1   MDTLETRGMQFDKIVIVDFNETCVPSLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQ 60

Query: 691 AN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
               ++ +  +    E +     S  L  L +                  D+  +     
Sbjct: 61  LFKNSKEITLSYIESETSKV---SNMLLELNLHIEPIKDAYTLFAPSPLKDYQEEEIKAA 117

Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                              ++S S +   +      Y   I +    P  +   + +  G
Sbjct: 118 IPKD--------------FSFSASSLNAFLTCKRRFYYHYIKRFKESPKDE---NNSAVG 160

Query: 810 TLFHNIITELIK 821
           +L H ++ E  +
Sbjct: 161 SLLHELLKEAYE 172


>gi|240138236|ref|YP_002962708.1| hypothetical protein MexAM1_META1p1570 [Methylobacterium extorquens
           AM1]
 gi|240008205|gb|ACS39431.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 878

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 75/665 (11%), Positives = 159/665 (23%), Gaps = 77/665 (11%)

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
             +   +  ++ ++                ++ + +     V +  A   R E +     
Sbjct: 157 PVVVALAQRVAVTWASGPRPVPEWIAATAIRVVSSEPEAPVVEVCSAATPRHEVLEALRW 216

Query: 378 LR----MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            R           + +            V        +++    G+P ++        +L
Sbjct: 217 ARGLMASGRARPSEIAIAACRTEEYDDVVLALRAEAHLDVRFVHGVPSASVREGQAAAAL 276

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            + + +      I                   R    L                +     
Sbjct: 277 ADVLVRGLSQDGI------------------RRLAALLRQGPGPFGALPPGWTAMLPREA 318

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                      +         E   +A  L   +               +    LS+  W
Sbjct: 319 PLTDLAAWERLLAGKDVLTRPEGPAVAKDLRAILSLLARGTSAAAEAGETLLHGLSLRIW 378

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            K  +     V              + G ++           S +      ++ ++    
Sbjct: 379 RKALLEGSPAVVDLTLSHQRIDDDADAGTSVVW------APASALACAPRRFVRLLGLSS 432

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            G    P++     L     + SR+L      +    +     +T+    +    +   +
Sbjct: 433 RG---WPQVASEDRLLSDHLVPSRILEPVPRSVSDRGDFAAILSTSSEAVVLSRPRRGAD 489

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
            +   K      H   M      +         +      R + R     G         
Sbjct: 490 GRLLGKSPLLRGHPDGMHLARNRV-------PEHAVGEIDRLMARPEEFRG---TAQATA 539

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
              C+  W              RP     L    R +S   +++L+ DP     R  L L
Sbjct: 540 AASCWRAWAGAGLTAHD--GRIRPNHPVVLSVLGRVHSARSLRKLLRDPLGFVWRYGLGL 597

Query: 794 DFIPHFKKDP--DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ-----------IID 840
           +     ++    D    G+L H ++   +               ++              
Sbjct: 598 ETADPSEETLTLDHRAFGSLMHEVLEATVGALETGGGFAAASADRRREALAAAVASVAAA 657

Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------------ 888
              E+   P  +          IS + L H +   +     +V +P              
Sbjct: 658 WERERPVPPALVWRRTLDEVTGISLAALSHPDAAYAGQT-TWVEVPFGGQAPKRDGAAVP 716

Query: 889 ------MAIESIGIHLTGFADRIDLLK-SGFVDITDYKTGDNPKKETAQK-LIDPQLSLE 940
                 + I      ++GF DR+DL +      + DYKT    K         + Q  L 
Sbjct: 717 WDHGLPVEIPGTEFRISGFIDRLDLSECRSEARVRDYKTEKPRKPTDVLAGGRELQRCLY 776

Query: 941 AAALK 945
             A +
Sbjct: 777 GYAAR 781


>gi|313680462|ref|YP_004058201.1| uvrd/rep helicase [Oceanithermus profundus DSM 14977]
 gi|313153177|gb|ADR37028.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
          Length = 917

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 90/926 (9%), Positives = 194/926 (20%), Gaps = 85/926 (9%)

Query: 35  RYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL 94
                 P  LA+VT    T+ A  EL++   E     +          DV  E       
Sbjct: 23  ALAEHPPYRLAAVT---FTRSAAAELKARLRERLLAIAAGRFQPSGAEDVPPEAVVRRAG 79

Query: 95  LSYNLNPPVSNIQRLLELARLIL--IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL 152
                    +        A L+        L      +       +    A A       
Sbjct: 80  ALATEVLGATVTTIHGFFAELLRQNALALGLEPDFLRIDASESQQIFAEEARAYVYLNEE 139

Query: 153 ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL--VELNASSPVGY 210
            D +  +         L A    +      L A F +   + +  RL    L  +    +
Sbjct: 140 DDALAEVLGRLFAKRSLAAELRPQGEAAEALWAHF-RAVLERYARRLGGEALGPADIELH 198

Query: 211 QIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
              L+            ++     + +     + P   R+ + +     G  V    D  
Sbjct: 199 AWRLLERAGREEALAARIRSRLARVFVDEYQDTSPLQGRVFAALEAL--GVEVEVVGDPK 256

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     +                 S       +      V  +     E + R+ 
Sbjct: 257 QSIYAFRNADVEVFREAMRRGEPLPPLVTSWRHDRALVRFLNRYVDWVAEERPEAFARAE 316

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-DE 384
                  P          +++ +                     EA  +A  L+    + 
Sbjct: 317 APPVEARPDAGPGRVRLQLVQGEARQDALRP------------YEADQLARWLQERHAEH 364

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
             +  A++    +    +   L   G+   +  G      +    L              
Sbjct: 365 AWRDMAVLVRSHSSVPLLVRALAAHGLPHVVVGGRGFYDLIEVRDLVHAARVALDPRGRF 424

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
           ++A  ++ P A           A         R      + +D       R+        
Sbjct: 425 SLAAFLRGPFAGLDLGRVERVLAAEDPLAELERAAPEVAERVD-------RLVRWVQTLR 477

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
              +  R+           ++ +                   +  +          L+ +
Sbjct: 478 PLDFFERMVRTPFLEGASYLERLEP-----------PARANVDQLLFKLASRRYGRLEFL 526

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
             D      +           ++    +     ++   +   D+     DG         
Sbjct: 527 LRDLEDLRGSDEAGVPEGGFDAVRIYTMHGSKGLEWPVVAVFDLNRGQPDGAEPFYVRPG 586

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           S         +     F         +  +             +   L+++      G  
Sbjct: 587 SG--EFAAEGDPDYPRFAAEWKERERQEAYRLLYVALSRPRSRLLLSLSVQLKPDGEGLR 644

Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
              +    G   +        + +        +                  +        
Sbjct: 645 PKFWRRTLGRTLIEEMNLAAWDALEVERLDAARLPAPKAAAAAPRRAADVDERLRAPVEP 704

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
           L               P                    P       +      P       
Sbjct: 705 LARPPVYSPSALKAERP------------------APPELDDEGDVAVELEEPGVDPGLV 746

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
               G L H  I +       ++      + +         E     +            
Sbjct: 747 ARTVGILVHYAIGQDWGPERLQDLWNQEAVQR-------LTEPERTRVKTEVAQRLETYW 799

Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL----TGFADRIDLLKSGFVDITDYKT 920
              L  E       ++ +      + + +    L     G  DR+  +      + DYKT
Sbjct: 800 -RLLGTELPALDERDEDYAE--FPLLLPTRTARLDTVWEGVIDRLYRVGD-VWVLEDYKT 855

Query: 921 GDNPKKETAQKLIDPQLSLEAAALKA 946
                +E   +    QL+L   A+ A
Sbjct: 856 ----DRELHPERYHFQLALYRRAVAA 877


>gi|111222283|ref|YP_713077.1| hypothetical protein FRAAL2865 [Frankia alni ACN14a]
 gi|111149815|emb|CAJ61509.1| conserved hypothetical protein [Frankia alni ACN14a]
          Length = 328

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 73/249 (29%), Gaps = 24/249 (9%)

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
           P         + S S     +N P     R + +L          +   RGT+ H+++  
Sbjct: 40  PRGAERPLIGSLSPSRAADFVNCPLRYRFRVVDRLPEP-----PSEAASRGTVVHSVLEN 94

Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLP-------PHIDIIWRHLFHKISHSFLEHE 871
           L        T E    + +       +           P     W      +   +   E
Sbjct: 95  LFDLPPAGRTLEAARTLVEPAWQALREREPAVETLFDGPDALAAWLDSARDLLAGYFALE 154

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL--LKSG-FVDITDYKTGDNPKKET 928
               + +      +  +  ++S G+ L G+ DR+D      G  + + DYKTG +P    
Sbjct: 155 --DPARLAPSARELYVEHVLDS-GLRLRGYVDRLDEATTPQGLALRVVDYKTGRSPGPAF 211

Query: 929 AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
               +  Q+   A  L       I       L    L  +  +    ++    + +   E
Sbjct: 212 EASAM-FQMRFYALLLWR-----IRGVIPRELRLYYLGDRTWLRAAPDEADLRATERRIE 265

Query: 989 KSLKNLIEI 997
                +   
Sbjct: 266 ALWAAIDRA 274


>gi|313632207|gb|EFR99276.1| ATP-dependent nuclease subunit A [Listeria seeligeri FSL N1-067]
          Length = 1236

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 88/869 (10%), Positives = 226/869 (26%), Gaps = 131/869 (15%)

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG--------TKGPIIIAGSTGSIPAT 242
             ++ + E   +         +   +    +                 ++I     +    
Sbjct: 358  FAQNFFEEKQKRGVLDFNDLEHLALNILLKEGAPSDVAKSYQKQFKEVLIDEYQDTNMVQ 417

Query: 243  ARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HPQY 294
              ++  V         +    D       +                              
Sbjct: 418  ETILGLVTRTNETSGNLFMVGDVKQSIYRFRLAEPTLFMAKYQQYRQDGTNGGIRIDLSR 477

Query: 295  SLAKLLDFLDIKREDVKRLGN---VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
            +     + LD      ++L +      +    + +   +  P   +      +++ K   
Sbjct: 478  NFRSRKEVLDATNFIFRQLMDKQVAEIDYDDAAELTLGARFPESQNMSTELLLIDMKTEE 537

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDE---------------NKKKSALITADR 396
            I+    +++  E    + EA +IA+ +R  +D                  +   +++   
Sbjct: 538  IEATDDELSPQELQKNQVEARAIAMKIRDMVDNKFPIYDKKMQQNRPIQYRDIVILSRAM 597

Query: 397  NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
              A  ++  +    I    +       T   + + +L+  I      + +A +++ P+  
Sbjct: 598  TSAPDIEEAMKILDIPFYANNNSGYFETTEVATMIALMKVIDNPYQDIPLAAVLRSPIVG 657

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                E    R          +     +D M      ++  A  K +  +    +      
Sbjct: 658  LKEEELGQIRMA--------KKKGYFFDAMLAFKDAVNSEAADKISEFIKQLNNWRELSI 709

Query: 517  KELAVLLVDHILQ---CITPLVTYKTNKNSTCGNLSISDWT--------KLTVTCLQNVC 565
            +E    L+  I Q       +      K       ++ D          +     ++ V 
Sbjct: 710  RENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTSFRGLFRFVRFVE 769

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI----------------- 608
              E R       +  G+    +    I     ++   +    +                 
Sbjct: 770  RLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVAGLSRKFNMRDIYSKSLLDK 829

Query: 609  ---ITRLIDGETVKPKIEKSSTLFI----LGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                                    I    +  + +  +    + L    E +    T  +
Sbjct: 830  DYGFASAYRDIEKMIVYPTIMQQAIKQKKIREMIAEEMRVLYVALTRAEEKLILVGTVPD 889

Query: 662  PFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
               +      +       L  A +   +   D+      RH  +   L E  I T+ +  
Sbjct: 890  FEKTSKNWLQVAKGKETILPAAVRAKAKCYLDWVGYTLIRHTSFKELLCEELIQTLPTDM 949

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKL--DYTTKQPHYKRPKPFPPLEAQPR----- 768
            + ++ +     F  + K+ G    +W   +            + +    +  Q +     
Sbjct: 950  VLQIEIKTXXMFLSSEKE-GVKQDNWMGNIKAHQPVPVQSAYKDEIKRFMNYQYKDEAST 1008

Query: 769  ----TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-------PDRTDRGTLFHNIIT 817
                  S +E+K+      +     +LK        +           T+ GT  H ++ 
Sbjct: 1009 EIRAKQSVTELKRQFTLQDSWSDTTLLKEFQKVSLDRPKFLQKNKLSATEVGTAMHTLMQ 1068

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI--Q 875
             +  +    +  ++  L++ +++     +     I+        +I   F E E      
Sbjct: 1069 AVSLENK-PSEEDVKQLLQTMMEKDILTDAQVKAIN------IDQIIG-FFESELGQKVL 1120

Query: 876  SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNP- 924
            S  E +   +P    +              + + G  D +   +   + + DYKT     
Sbjct: 1121 SEKENVKREVPFSYLLPVEKLDKQANLDEHVLIQGVVDSMIEQED-SIILIDYKTDKIAG 1179

Query: 925  --KKETAQKL-----IDPQLSLEAAALKA 946
                    +         Q+ L A A++A
Sbjct: 1180 RYSGWEVAEKIMKERYQVQIKLYAEAIEA 1208


>gi|260435507|ref|ZP_05789477.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 8109]
 gi|260413381|gb|EEX06677.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 8109]
          Length = 794

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 75/770 (9%), Positives = 194/770 (25%), Gaps = 115/770 (14%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL----PIIKSL 81
           L   +        ++P   A +     T +A +E++     +  +K        P   +L
Sbjct: 36  LTHRIAHLIGEHGVDP---AQILAVTFTNKAAREMKERLELLLAQKLAQSQYGQP-WSTL 91

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             V + +  + +         +     L   AR++    +K  D     + +       +
Sbjct: 92  PAVEQRQSRSRIYREVTKELWIGTFHALF--ARMLRYDIDKFQDSEGLTWTKQFSIYDEA 149

Query: 142 PANAIW---LAKNL------------ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
            A ++    + + L               I   + +    +   A    +          
Sbjct: 150 DAQSLVKEIVTQELQLDPKRFDPKKTRWAISNAKNQGWLPDQFEANAEGQR-------GK 202

Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPA 241
                 + + + L   NA       +  ++   ++             +++     +   
Sbjct: 203 LTADVYRRYRKALAANNALDFDDLLLLPVQLLQQNEQVRSYWHRRFRHVLVDEYQDTNRT 262

Query: 242 TARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
              L+  +          +   G  V    D       +             +       
Sbjct: 263 QYDLIKLLVTDGQEPQDYDDWAGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGDQAPD 322

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
           + +  + +  L+        +   +N +                    N++ ++  +   
Sbjct: 323 EAT--RTMVKLEKNYRSTATILEAANALI-----------------SHNSERIDKVLLPT 363

Query: 353 QKCFSDVALIEADNEREEAISIAIALR----MSLDENKKKSALITADRNLARRVKLELTR 408
           +     ++L   D+E  EA ++   LR     + + +    A++      +R ++  L R
Sbjct: 364 RGEGELISLTRCDDEIAEAEAVVHRLRTMEAANPELSWGDMAVLYRTNAQSRAIEESLVR 423

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
           +GI   +  G+          L + L  +    D +++  ++  P               
Sbjct: 424 WGIPYIVVGGLRFYDRREIKDLLAYLRLLINPADTVSLLRVINVP--------------- 468

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                   +       I  L            +    P     L     +  +   D + 
Sbjct: 469 --------KRGIGKTTIQRLTDAANQLGIPLWDVVSDPEAVRSLGGRSAKGLLQFCDLVN 520

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                    +   +    +  I    + +    + +              +E    +  +
Sbjct: 521 -------DLQLRSHEVTPSELIQQVMEKSGYVSELIADGTDEAEERRRNLQELVNAALQY 573

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            +  E G      A                  K   +  + ++    S+ L F  + L G
Sbjct: 574 QEENEEGDLEGFLASA--------ALASDADSKDTAADRVTLMTLHSSKGLEFPVVCLVG 625

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
           L +G++P   + +   S   +  L      +   +            H+   R       
Sbjct: 626 LEQGLFPSYRSLDDPASLEEERRLCYVGITRAKERLFL--------SHVSERRLWGGMRE 677

Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
             + S +L  L                        +L    +      P 
Sbjct: 678 AAVPSVFLSELPEALVQGDIPQSCGVALRRERRLERLTRVDRDKPLSAPA 727


>gi|311112208|ref|YP_003983430.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa ATCC 17931]
 gi|310943702|gb|ADP39996.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa ATCC 17931]
          Length = 957

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 72/687 (10%), Positives = 174/687 (25%), Gaps = 109/687 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             +     T +A  E+R     + G ++       I +           +          
Sbjct: 163 GQILAITFTNKAAAEMRERIQALIGPRAQHMW---ISTFHSFCVRVLRREAKAL------ 213

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
              ++    +       +  L  IIK+L  ++    P +          ++ + + + + 
Sbjct: 214 --GLKSTFTIYDSADS-QRLLTLIIKELNLDTKKFAPKAVG------HRISALKNELVSA 264

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                             W      +      +T+RL   N+          +    +  
Sbjct: 265 -------EEYSAAAANNPWEKT---IAQIYTVYTQRLRAANSLDFDDLIGKTVFLLKKFP 314

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTV---------------ANHPNGAIVLPGL 262
                 +     I++     +  A   L+  +                + P    +    
Sbjct: 315 EIANYYRRKFRHILVDEYQDTNHAQYALVRELVGAHPQGNAREQGPYPDAPPPGELTVVG 374

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       +     ++     S+              +  L+      + + + +N +  
Sbjct: 375 DSDQSIYAFRGADIRNITDFESDYP---------NAHIILLEQNYRSTQNILSAANAVIE 425

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
           R+       L   + +                    +    A++E  EA  IA  +    
Sbjct: 426 RNPNRRPKKLWTASGEGT-----------------KIVGYVAESEHAEARYIAQEIDRLA 468

Query: 383 DENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
           DE+       A+       +R ++  L R G+   +  G             + L A+  
Sbjct: 469 DEHGIKPSDVAIFYRTNAQSRALEELLMRAGLPYRVVGGTRFYERKEIKDALAYLRALTN 528

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
            +D +++  ++  P    G   + +     + + ++      +          L   A +
Sbjct: 529 PDDDVSVRRILNEPKRGIGAKSETVVADYASAQRISFFAAARAAAAEPGSVPGLGAAAVK 588

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT--NKNSTCGNLSISDWTKLT 557
           K    V            E A   ++ +L+    L   +   +        ++S+     
Sbjct: 589 KYAEFVKLMDDLAQIARTESAATTLEAVLEQSGYLAALRESKDIQDESRVENLSELLDAM 648

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
           V                L          S+ S+                           
Sbjct: 649 VEF--EAENPGADLEQFLEHVSLVADADSIPSRGASADGQTP-----------SAAQIAA 695

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
              + +    + ++    ++ L F  + L GL  G++P   A              L   
Sbjct: 696 EAAEAKAQGMITLMTLHTAKGLEFPVVFLTGLEHGLFPHQRA--------------LTDE 741

Query: 678 EKYIGQAAHDFEMANGT-RHLIYTRSL 703
            +   +    +       + L  TRS 
Sbjct: 742 GEMSEERRLAYVGLTRAMQRLYVTRSE 768


>gi|206602356|gb|EDZ38837.1| Putative UvrD/REP helicase [Leptospirillum sp. Group II '5-way CG']
          Length = 649

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 76/686 (11%), Positives = 182/686 (26%), Gaps = 117/686 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPV 103
            + +   TK+A + L+    ++      +L    +   V                    +
Sbjct: 54  RMLVLTFTKKAARVLQHRLADLLTGPQVLL-WAGTFHHVGYRLLREFGSRIGYTGSPVVI 112

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               ++  L  ++  +   L   +              PA  I  A +L+     +  E+
Sbjct: 113 DREDQVDLLKSILSAFPEGLRKELP-------------PAGLILNAISLSRNSM-LSLED 158

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-- 221
             ++    L           A + +      + E   +   +         +        
Sbjct: 159 VIYDRFSGLIP---------AIETVLRIRTEYEELKRKDRLADFDDLLTGWLDILESGPD 209

Query: 222 ---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
              L++     +++     + P  + ++  +A            D       +     ++
Sbjct: 210 VLELLQQRFRFLLVDEYQDTNPLQSTILDKLAARHKS--FFVVGDDSQSIYSFRGAHVEN 267

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       +P+  + +L             L   +  + G    I K+  P  T +
Sbjct: 268 ILTFPDR-----YPEARIYRLETNYRSSP---PILDLANRIILGNERRIEKTLRPFHTEE 319

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
             +   +       Q  F    + +  +   +A  IA               ++     L
Sbjct: 320 GESPRTVGLYSDADQAHFIGSTVDQLLDGGTQAAEIA---------------ILYRSHYL 364

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +  V+ EL R  I   I++G+      H   + + L  +    D +A+  L+        
Sbjct: 365 SLPVQFELARRKIPFSITSGLRFYEQAHIKDVLAHLRLLLNPLDTLAMNRLL-------- 416

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                +    + +  S  L R+  +  +        ++ +    
Sbjct: 417 ---------------------RMIPRMGERSSEKLIRVLGEVEDVFSALTDEKILKTAPS 455

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           L+   V  + + +  L   +  + ST G L +          L                 
Sbjct: 456 LSREGVRKLGERLVSLREVQRKEESTVGLLVMEILEAGYRRDL-------------YDIR 502

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E+ +   +      E     K       +I       E           + +    +++ 
Sbjct: 503 EDPEEREADLVAFAEQLGEQKDLEGFLGEITLLENLEEMALSNASVPDRVILSSIHQAKG 562

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L +DT+ +  +NEGV+P   +              +   +    +    +      R  +
Sbjct: 563 LEWDTVFVLSMNEGVFPPEKS--------------VLRPQDLEEERRLFYVAVTRARRDL 608

Query: 699 YTRS-----LRENNIPTIASRWLQRL 719
                     R        SR+L  +
Sbjct: 609 LLCVPESAISRGRGERLYPSRFLSEI 634


>gi|315092772|gb|EFT64748.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL060PA1]
          Length = 1078

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 83/897 (9%), Positives = 211/897 (23%), Gaps = 162/897 (18%)

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +       A   +    G +++     + P    ++         + +    D     
Sbjct: 234  ALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQWEILRRA--FHGHSNLWLIGDPKQSI 291

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +      +    + + ++  H           LD+     K +    N ++  + +  
Sbjct: 292  YAFRGADIHAYQDAAQSASHVLH-----------LDVNYRTDKPIVEAVNTLFSNAQLGH 340

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDEN 385
               +   T+  + + I        +        +  ++A    +   + +          
Sbjct: 341  GISMELVTAHHQESRIKTATTDGPRYHWSQPFQIRCLQAPAGAQLNTATSDQ-------- 392

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                       +L  +V + L    +  D     PL     + ++ +         +   
Sbjct: 393  -------FVTEDLVNQVIMMLEGGTVVQDGDRLRPLRPNDIAILVRTRRR----GAELAT 441

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              +    P    G    + S+A   L                L   + +     +    +
Sbjct: 442  ALSQAHQPAVFSGASPVWSSQAAEDLMT--------------LLEALENTDERLRTRLCL 487

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                     +       +   +   +    +  T         ++     + V  +    
Sbjct: 488  SDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAVLHRPGVLVRLVSM-- 545

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                R + +L    +   +++   ++  T +        WI    +L   +  +      
Sbjct: 546  AGGERYVTDLRQVAQKAHIAACEGRLTATATAA------WIREQQQLAGDDEPRRLDSDQ 599

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------- 672
              + I+   E++ L F  ++L  +  G  PK +   P +    Q  +             
Sbjct: 600  QAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHDGQRRVLDISSQGTDRSIA 659

Query: 673  -NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDN 730
                  ++        +      R  +              A + L  +    G      
Sbjct: 660  VESHEEDERGENLRLLYVALTRARSAVRLWWSPCPRRHRWSAFQRLVEMDRTTGELGLGV 719

Query: 731  LKKRGQCYLDW-------------TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                                     + L  +          P          ++ +    
Sbjct: 720  AGTDPGTLPWLNSGPIATVIAPTNQKLLTRSVSAQARACVAPRTLTRPLDTAFARTSYSG 779

Query: 778  LINDPYAVYARRILKLDFIPHFKKD------------PDRTDRGTLFHNIITEL------ 819
            L  + +A  +  +           +            P  T  GTL H ++  +      
Sbjct: 780  LTANLHAAVSESMTNNLIDEPVDDESVDDTAPGLCGLPGGTSFGTLVHTVLEYIDTAATD 839

Query: 820  --------------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKIS 864
                          +    +    E+   ++Q++ S          +          +++
Sbjct: 840  LSSEVLSITRRALRMSPLPDVPPSELATSLEQVLHSDLGPLAPGMTLADFSPADRLAEMN 899

Query: 865  HSFLEHEEKIQSSIEKIFV------------------NIPAKMAIESIGIH--LTGFADR 904
                  +    +++  +                     I A +      +   LTG  D 
Sbjct: 900  FELAMTQHGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDA 959

Query: 905  IDLLKSGFVDITDYKTGDNP-------------KKETA--QKLIDPQLSLEAAALKAGSF 949
            +     G   + DYKT   P                          Q  L +AAL     
Sbjct: 960  VLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRAIMFSSHYPLQGLLYSAALHRFLA 1019

Query: 950  SQIDCRKVA------NLFYIRLKQKFKIDCITNDKKKYSA---DELSEKSLKNLIEI 997
            S +     A         ++R      +         ++     EL E   + L  +
Sbjct: 1020 SSLPGYDPATHLGPIGYLFVRGMADRPVPDGDMPDGVFTWHPRPELIEAISEQLGGL 1076


>gi|294782364|ref|ZP_06747690.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
 gi|294481005|gb|EFG28780.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
          Length = 898

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 98/325 (30%), Gaps = 37/325 (11%)

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
            L   +    PK    N   +   +  L LKT E+ I    + F         I   SL 
Sbjct: 493 ALLYADSQSLPKTKVNNTMFTEQQKIKLALKTNEEEILIQKYRFFQNILNLDKITVYSLV 552

Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRG---QCYLDWTRKLDYTTKQPHYKRPKPFP 761
             +I    S ++  L+        D    +G    CYL    ++    K       K   
Sbjct: 553 NQDINIDFSPFIYELINKYSAKELDISDLKGFFKACYLQNKTEVFKKEKVFFRAFSKKNT 612

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK--DPDRTDRGTLFHNIITEL 819
                  T    +   L  +    +  +I  ++ I              G + H  + ++
Sbjct: 613 DFINNTLTIGAYDYILLKKNETFFFLDKICGIESISETSPVNGISPKVLGNILHKTLEDI 672

Query: 820 IKKRINKNTPEINHLMK--QIIDSHFEKENLPPHI----------DIIWRHLFHKISHSF 867
            K        + N L+   + I  + EK     ++          + +           F
Sbjct: 673 FKTNWKNILNDSNKLLLSKEEIKKYLEKYIWQENLKIENFMELYLNEVLFPRLIDNIEKF 732

Query: 868 LE--HEEKIQSSIEKIFVNIPAK------MAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
           LE  HEE   + I++I     +       +  + I I L G AD +   +     I D+K
Sbjct: 733 LEVLHEELKDTKIKRIEAEKESTTKNVAYLEHKGIQIVLNGRADLLIETE-KARYIIDFK 791

Query: 920 TGDNPKKETAQKLIDP-QLSLEAAA 943
           TG            D  QL   A  
Sbjct: 792 TGS----------YDKNQLEFYALM 806


>gi|291514125|emb|CBK63335.1| hypothetical protein AL1_07630 [Alistipes shahii WAL 8301]
          Length = 870

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 89/826 (10%), Positives = 201/826 (24%), Gaps = 49/826 (5%)

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
               P     AL+       +   +   +  G T +   T+ L+ TV         LP   
Sbjct: 14   RLDPAQRGPALLDTLTLGPLGLLQELELRLGLTAAT--TSNLLRTVDYVKLLRDYLPAHP 71

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +                      +  +       I              +  R
Sbjct: 72   DSPFAPSFEADEFNVAAELLRWRDLLRLAGWKASMRGISPRIDLLADLEASLARPALGDR 131

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
               + +       +D     +   ++           L        E++  A        
Sbjct: 132  WQAVLEELPKHRLADWTLELLAPKQLLFPLYGRLIDRLGACGVRIRESVQQATRPEQVRR 191

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                   +   D   A R    L      +  + G  L+  L  +   +  ++I + +  
Sbjct: 192  -------IRVRDFAEAFRGIPTLDPKRWTLICNHGKLLNNVLRLNGCPTTESSIRENDSS 244

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            +         L      E   +     L              ++L    L       +  
Sbjct: 245  VVQLFEAGFSLFIHPSEEVPEAVDIYRLLNYLQALPNPIPARINLALQRLLTSEAGIDPE 304

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                        D E      + I + +  L+T    +  +   + +        +    
Sbjct: 305  RWRATVDEALAADDEADEEARNRIRRRLDTLLTPFF-EAVSPRAIPLERLQAYARSLRGW 363

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                            +   +  +   ++ET S    +       I+ +    +++    
Sbjct: 364  ALQCSRLGDEASGALPQLAEMCDVMLALLETCSGDTIDGQLLQGWISSIRIDASIRNTEA 423

Query: 624  KSSTLFILGTLESRLLNFDTLIL---GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
            +  +  ++    + +   D  +     G+ E  +            + +  + + +  + 
Sbjct: 424  QVGSFDVVEHPAALVDPVDRAVWVDCMGMPELHYDFEFLSPDERIGLERQGVRVWSRTEE 483

Query: 681  IGQAAHDFEMANG--TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
            +           G   R LI      +          +  L     T F           
Sbjct: 484  MKVELELIRRGVGQVRRELILITPESDRGTRMEEHPIVDGLRGEELTPFPVETDTVPVEL 543

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                RK+           P+          T S + ++ LI  P+    +   +L     
Sbjct: 544  PPLCRKMPEFRIAVGKIAPR---------ETESATSLELLIQRPFDYVMKYTARLRPGGV 594

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTP-----EINHLMKQIIDSHFEK--ENLPPH 851
             + D      G + H  +  ++++                   +       +    L   
Sbjct: 595  RELDELNLIEGRVAHRTLELIVRQTEGNLNAMSGIIARREDFDRYFLKAVRECGLGLLLA 654

Query: 852  IDIIWRHLFHKISHSFLEHEEK--IQSSIEKIFVNIPAKMA-IESIGIHLTGFADRIDLL 908
               I R    +   + L    +  +Q  +    V   A    +++    LT   D +   
Sbjct: 655  RHAIERKALQEQLRNALSALMQILLQYGLRVEGVEQEASAPLLDAGKPQLTVRVDLLLRS 714

Query: 909  KSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
            ++G   I D K   N K+     ++  D QL +   A+ +        R VA   Y  L 
Sbjct: 715  RAGNPVIFDLKWSRNEKRYEAMIREGRDLQLRVYDHAVSSNL-----GRPVAVTGYFLLG 769

Query: 967  QKFKIDCITND--------KKKYSADELSEKSLKNLIEIVTLLQNG 1004
            +   +     D            +  E   +            ++G
Sbjct: 770  RGQLLSADLPDLRGYVKQVDAPRTTAEAMVRIRAGYERRYEEFRDG 815


>gi|325971393|ref|YP_004247584.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
 gi|324026631|gb|ADY13390.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
          Length = 650

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 76/723 (10%), Positives = 180/723 (24%), Gaps = 130/723 (17%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T++    +          + +   T R  QELR       G  +     + +      +
Sbjct: 32  RTIIARAAHRITQGTQADRLLVLTFTNRVAQELRHRLAHEVGS-AGESVQMGTFHAFCLK 90

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
             ++           + +      L  ++     K          + P     S  + + 
Sbjct: 91  VMSSLPKSFAISGLSIIDSDDQDNLMGMVRKSLIKNL--------KGPKRGFPSSDHLLS 142

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
           L     + +   +  +    +   L  E+         D        + +R  E      
Sbjct: 143 LYSYSRNTL---QNTDVYLHEQTDLDEEQI--------DLCMQIFSLYQQRKEERGYLDY 191

Query: 208 VGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
               I    A        H +      +++     + P    ++   +       +    
Sbjct: 192 DDLLIKFDEALTKKAALRHAVCTLFDEVLVDEMQDTNPIQFNILKHFSR--EQVNLFCVG 249

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       +            +  + S         +   L +     + + +VS     
Sbjct: 250 DPAQSIYRFRGAEFTHMMEFGTIFSDS---------ISFSLSLNYRSYQEILDVS----- 295

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            + ++S S  P   +     + +  +  N+      V L + +N+ +E   IA  +    
Sbjct: 296 -NWLLSCSSYPYQHT----LEAIRGRSENL------VRLEDFENQADECSWIADQVVGYQ 344

Query: 383 DE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
           ++        ++      A+ ++ EL R  I      G+ L+ + H   + +LL  +   
Sbjct: 345 EQKIPLSDIMVLYRSSFEAKTLEAELIRRKIPYRFIGGLVLTKSAHVRDVFALLRLVRNS 404

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
           +D +A    ++       FP      A+  +  V   G  +   I  L+SL+        
Sbjct: 405 SDDLAWMRYLQ------LFPRIGEISAERIVNNVYSAGTASDSVIQTLESLLGK------ 452

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                          D      L   +    TPL   +                      
Sbjct: 453 ---------------DHASVTALASAMKAGTTPLACIQAAIQQLSPL------------- 484

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
              +              +  + ++  +  + +         +    +            
Sbjct: 485 ---LAERYDHWKQRKQDLQLLEKVARTYHTLGQFIDDFTLEPMHGTQLSNE--------- 532

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
                  L ++    ++        +                 +        +L   E  
Sbjct: 533 --SSDDALTLITVHSAKGTEAPICFVASA--------------IPSQYPHSRSLGDLEAE 576

Query: 681 IGQAAHDFEMANGTR-HLIYTRSLRENNIPTIASR-------WLQRLLVLGGTDFFDNLK 732
             +    +      +  LI TR  R  N   + S        +L+ +             
Sbjct: 577 EEERRVLYVALTRAKNELIITRYSRARNSMWVDSSPAKSQAYFLESIPQNLILTTLHGYT 636

Query: 733 KRG 735
            RG
Sbjct: 637 SRG 639


>gi|238064528|ref|ZP_04609237.1| hypothetical protein MCAG_05494 [Micromonospora sp. ATCC 39149]
 gi|237886339|gb|EEP75167.1| hypothetical protein MCAG_05494 [Micromonospora sp. ATCC 39149]
          Length = 305

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 61/199 (30%), Gaps = 18/199 (9%)

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                       + S S        P     R I +L   P  ++      RGTL H ++
Sbjct: 13  RATAKVPATVRASLSPSRAADFKTCPLLYRFRSIDRLPERPSVEQ-----VRGTLVHAVL 67

Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENL---------PPHIDIIWRHLFHKISHSF 867
             L        TPE    +          E            P     +      +   +
Sbjct: 68  ERLFDLPAAGRTPEAAGDLVAPQWDRLVAEQPELAALFDAGDPDGTAEFLRSAAGLLEGY 127

Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
              E+  +  +E           ++   + + G+ DR+D+   G + + DYKTG  P++ 
Sbjct: 128 FAVEDPRR--LEPAEREALISAVVDD-ELLIRGYLDRLDVAPDGALRVVDYKTGGAPREA 184

Query: 928 TAQKLIDPQLSLEAAALKA 946
              + +  QL   A  L  
Sbjct: 185 FEARAL-FQLKFYALVLWR 202


>gi|306822220|ref|ZP_07455602.1| UvrD/REP helicase subfamily [Bifidobacterium dentium ATCC 27679]
 gi|309802289|ref|ZP_07696397.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022]
 gi|304554602|gb|EFM42507.1| UvrD/REP helicase subfamily [Bifidobacterium dentium ATCC 27679]
 gi|308221172|gb|EFO77476.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022]
          Length = 1346

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 56/548 (10%), Positives = 154/548 (28%), Gaps = 46/548 (8%)

Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTG 237
              D L      +       N +    + IA  +            +     +++     
Sbjct: 255 RQRDLLLHLVADYNAEKRARNMAEFSDFTIAAFQLVTRFPSIGATYRKRYSHVLLDEYQD 314

Query: 238 SIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT-YSTHPQY 294
           +    A L++++   +    + V    D       W   +  +  +   +     T   +
Sbjct: 315 TSTTQAALLASLFHVDSARRSAVNAVGDPFQSIYAWRGASPGAFRMLQRDFGMSETDKPF 374

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
           +L+       +  E    L      +  R +  S        +        E  +  +  
Sbjct: 375 ALSVTRRNSRMVLEAANNLTKPLR-LPVRRLSSSLMREVDVPALSNIDTAPEGTLGVLGF 433

Query: 355 CFSDVALIEADNEREEAISIAI----ALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
                 +       + AI++      AL   + +N+   A++   +    + +  L + G
Sbjct: 434 ATFGQEIDAVVRFAKHAIALHTPSDAALAGGVKDNRPHVAVLFRSKQSMPKYEDALKQAG 493

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
           +   +     L        + +LL+ I    D  ++  L+  P    G  +     A   
Sbjct: 494 LTTLVVGQAALLERPEVQDIFALLHVICDHTDSGSLMRLLATPRFGVGAADLQALAAIAE 553

Query: 471 LELVALRGNK------------NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
               A R                  D     +      +  +    V  ++ ++      
Sbjct: 554 NVNTAHRYRALIAAGIIPGKTDEPDDSSATGAAQAKMPSETEIRAIVREYRDQVPNAVFL 613

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGN-----------LSISDWTKLTVTCL------ 561
           + ++L D + + I   ++                        + +  +  +  L      
Sbjct: 614 IDLMLRDDLSKLIDGKLSAGGAAAVLRAADMLRQVQHVYGHPLPEVVRAAIGALNLDIDM 673

Query: 562 ---QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              +++          L        +S   + + E  +    +   ++  +  L D    
Sbjct: 674 LLAEHMQHPNDTSNVTLAKSPLDAVMSLADTYMQEIAAQGTPSLRAFVSWVDSLRDASDD 733

Query: 619 KPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                 +   + ++   +S+ L +D + + G+++G +P +   +  ++   +    L   
Sbjct: 734 NATAPDTPVDVMLMTVHQSKGLEWDAVAVVGMSDGTFPSSQGDSLNVTVDEEHLNGLNNG 793

Query: 678 EKYIGQAA 685
           E    + A
Sbjct: 794 EWTPPEYA 801



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 99/992 (9%), Positives = 239/992 (24%), Gaps = 85/992 (8%)

Query: 53   TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
            T+R  + +          K   LP+ +    ++ E     L            +      
Sbjct: 379  TRRNSRMVLEA--ANNLTKPLRLPVRRLSSSLMREVDVPALSNIDTAPEGTLGVLGFATF 436

Query: 113  ARLILI------WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
             + I            L                   A      +++    D ++      
Sbjct: 437  GQEIDAVVRFAKHAIALHTPSDAALAGGVKDNRPHVAVLFRSKQSMPKYEDALKQAGLTT 496

Query: 167  EDLHALKNEKYGMWWLLAADFLKIASKY-----WTERLVELNASSPVGYQIALMRAEAEH 221
              +      +           L +   +         L             AL       
Sbjct: 497  LVVGQAALLE-RPEVQDIFALLHVICDHTDSGSLMRLLATPRFGVGAADLQALAAIAENV 555

Query: 222  LMKGTKGPIIIAGST-------GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW--N 272
                    +I AG             AT    + + +      ++      +P A++  +
Sbjct: 556  NTAHRYRALIAAGIIPGKTDEPDDSSATGAAQAKMPSETEIRAIVREYRDQVPNAVFLID 615

Query: 273  TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             +     +        +      L        ++      L  V     G   +     L
Sbjct: 616  LMLRDDLSKLIDGKLSAGGAAAVLRAADMLRQVQHVYGHPLPEVVRAAIGALNLDIDMLL 675

Query: 333  PPDTSDMRNTDILENKIPNIQKCF-------SDVALIEADNEREEAISIAIALRMSLDEN 385
                    +T  +      +            ++A     + R     +  +LR + D+N
Sbjct: 676  AEHMQHPNDTSNVTLAKSPLDAVMSLADTYMQEIAAQGTPSLRAFVSWV-DSLRDASDDN 734

Query: 386  ------KKKSALITADRN--LARRVKLELTRFGINIDISAGIPLSTTLHSSIL--TSLLN 435
                       L+T  ++  L       +         S G  L+ T+    L   +   
Sbjct: 735  ATAPDTPVDVMLMTVHQSKGLEWDAVAVVGMSDGTFPSSQGDSLNVTVDEEHLNGLNNGE 794

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY--DIMDLKSLVL 493
                        T +++P A                    + GN       + D +++  
Sbjct: 795  W-TPPEYAETAKTWLQNPAAVPVPVRVDAGILPRFPHDSLVDGNPIEALASLDDAETIDD 853

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
            +   T ++           +      +      +      L      +      L+ S  
Sbjct: 854  EVFGTLRSLQIDDMEGMDPTGLYLTQSEEYGRRLHADERRLAYVALTRARHEVLLTFSVH 913

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            ++ +          +  + P+ ++ E   +++ + S   E      A++    D+I  + 
Sbjct: 914  SEESRDSRLVEGKKQGVRGPSNFWSEVRDSMNGIVSVARE--PGNLADSAAAADMIDGVE 971

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               ++   +     +           +++  ++G            +         SD  
Sbjct: 972  TLASIGAPLPDGYFV------GEHARDYEDAVVGDAWNAPLEPAAEQRNLPWPCGLSDRL 1025

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
              T      Q     +  +G           ++    +    L R  +L G +    +  
Sbjct: 1026 ATTFAASADQVRSAMQALSGAYDGHDGDQSADDMTMPVDESLLLRARLLVGDEHL--MPD 1083

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
             G    D+   +    ++      +    L+A+          +               L
Sbjct: 1084 TGDSATDFDATVRVRGERILAGGRQNVTSLQARAGVMDDRSSSEYWR-----------GL 1132

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-----INHLMKQIIDSHFEKENL 848
                     P     GT  H      +      +           L+  +     +   +
Sbjct: 1133 VRPIPRVASPSAQ-LGTRLHAWAERFVMADAESDAGVGNAVSRADLINDLAQDEAKIVRI 1191

Query: 849  PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL- 907
                +        K+        + + +     +      + +  +G  + G  D +   
Sbjct: 1192 EQSGESGNASQERKLLDWRRRLVQSVWAKRNPAWAERQLVVDVPQLGTIVNGKLDAVFFG 1251

Query: 908  -----LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
                  +S    I D+KTG  P+K         QL +    L   +   +    +    Y
Sbjct: 1252 GIDPNDQSKTYTIVDWKTGHRPRKRNEIDEKLAQLDMYRVLL--SAMEGVPLNSIDACLY 1309

Query: 963  IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
                     +    D++  + D+  ++ L  L
Sbjct: 1310 Y------LSEPKEGDRELKALDKTEQEILAEL 1335


>gi|225351772|ref|ZP_03742795.1| hypothetical protein BIFPSEUDO_03369 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158116|gb|EEG71399.1| hypothetical protein BIFPSEUDO_03369 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 1377

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 53/490 (10%), Positives = 130/490 (26%), Gaps = 47/490 (9%)

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI--VLPGLDCHIPTAIWNTITE 276
                +     +++     +    A L+S + +  +     V    D       W   + 
Sbjct: 298 IGAAYRKRYSHVLLDEYQDTSTTQAALLSALFHADDTHRSAVSAVGDPFQSIYAWRGASP 357

Query: 277 KSTNITSSNTT-YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR--SMVISKSFLP 333
            +  +   +    +T   ++L        +  E    L         R  S ++ +  +P
Sbjct: 358 GAFRMLQHDFGMDATSRPFALTVTRRNSRMVLEAANNLTKPLRLPARRLSSSLMREVDVP 417

Query: 334 PDT-SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALI 392
               +D      +     +      D  +  A +        +  L   + +N+   A++
Sbjct: 418 ALVNTDEAPEGTVGVLAFDTFGQEVDAVVRFAKHAIALHTPSSRDLDNGMKDNRPHVAVL 477

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
              + +  +    L R G+   +     L        + +LL  +    D  A+  L+  
Sbjct: 478 FRSKGIMSQFAEALERAGLTTLVVGRSALLERPAVQDVFALLRVVSDHTDSAALMRLLAT 537

Query: 453 PLAKFGFPEKYLSRAKNALELVALRG----------------------NKNSYDIMDLKS 490
           P       +               R                                  S
Sbjct: 538 PRFSISANDLQALADTAEQVNTMCRYRALVSAGIVQEQSNKEEKPENLGIYGVTPKSGPS 597

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
               R   ++    VP+    +    ++    L+D  +         +           +
Sbjct: 598 DAEIRAIVREYRDQVPNAVFLVDLMLRDDLAELIDGRVSREGTKEVLRAADAIRQVQRML 657

Query: 551 SD-WTKLTVTCLQNVCLDEHRKLPNLWF-EEEGKTLSSLFSKII---------------- 592
                ++    +  + LD   +L       +   TL++    +                 
Sbjct: 658 GHPLPEVVREAIVALNLDIDMQLAEHMRGGQADATLAASRVALAKSPIDALLKLVDTYMQ 717

Query: 593 ETGSCIKANAIEWIDIITRLIDGETVK-PKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
           E  S    +   +I     L D         +    + ++   +S+ L +D + + G+ +
Sbjct: 718 EIASQGTPSLRAFISWADSLRDAREEHAVAPDVPVDVVLMTVHQSKGLEWDAVAVVGMTD 777

Query: 652 GVWPKNTAKN 661
           G +P N   +
Sbjct: 778 GGFPTNKGSD 787



 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 61/225 (27%), Gaps = 25/225 (11%)

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-----------NTPEINHLM 835
            AR   +    P           GT FH      I    N             T      +
Sbjct: 1150 ARTYWRGLVRPIPNVASPAAQLGTQFHAWAERFIMADANDAGIGVGASGNGGTRVAESRL 1209

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
              + +                    + I            +  +  +      + +  +G
Sbjct: 1210 AMLAELRRNNAAQSQDNQDDNGADNNGIFDWQQRLATSTWARRKPAWAERQIVVNVPQLG 1269

Query: 896  IHLTGFADRID------LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
              + G  D +         +S    I D+KTG  P+K+   +    QL +    L   + 
Sbjct: 1270 TIVNGKLDAVFFGGLDGADRSKQYTIVDWKTGKKPRKKEEIQKKLAQLDMYRILL--SAM 1327

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
              +    +    Y         + I  D++  +AD+  E+ L  L
Sbjct: 1328 EGVPLTAIDACLYY------LSEPIEGDRQLNAADKTEEEILAEL 1366


>gi|5542369|pdb|1QHH|B Chain B, Structure Of Dna Helicase With Adpnp
          Length = 273

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 82/292 (28%), Gaps = 36/292 (12%)

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATA 243
               + + +RL+  ++       +  ++         H  +     I I     +  A  
Sbjct: 7   SDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQY 66

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            L+  +A       +    D       W     ++            +P   +  L    
Sbjct: 67  TLVKKLAERFQN--ICAVGDADQSIYRWRGADIQNILSFE-----RDYPNAKVILLEQNY 119

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
              +  ++    V      R                  T+  E K          +   E
Sbjct: 120 RSTKRILQAANEVIEHNVNR------------KPKRIWTENPEGKP---------ILYYE 158

Query: 364 ADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
           A NE +EA  +A  +R ++   +   +  A++      +R ++  L +  I   I  G+ 
Sbjct: 159 AMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGGLK 218

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
                    + + L  I   +D +++  ++  P    G           A  
Sbjct: 219 FYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADH 270


>gi|289677452|ref|ZP_06498342.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae FF5]
          Length = 727

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 62/708 (8%), Positives = 163/708 (23%), Gaps = 163/708 (23%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           ++ R L LA        +L+ R      ++   P S LS+  +   A  +   +  ++  
Sbjct: 23  SLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  ISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRLVKRVMRELGLDEQRWPA 141

Query: 198 RLVE---LNASSPVGY----------------------------------QIALMRAEAE 220
           R  +                                                 L+RA   
Sbjct: 142 RQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEIACQRAGVIDFSELLLRALDL 201

Query: 221 HLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            +++     +       +  +A   +  +V+   D       W 
Sbjct: 202 WRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++ +  SS+   +                              +       +    
Sbjct: 260 GAKIENIHQYSSDFPDTE--------------------------VIRLEQNYRSTASILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSA 390
             +   + N+  L  ++         + L  A NE +EA  +   +  +L    ++   A
Sbjct: 294 AANGLIINNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKIGISRNDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + +  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                               +  ++        +      +     
Sbjct: 414 NVP-----------------------ARGIGEKTVEAIREHARHADVSMWEAMRLLVANK 450

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            L+          ++ I      ++                    L +     +      
Sbjct: 451 GLTGRAATALGGFIELIENLAAKVMEMP-----------------LHLMTQTVIEQSGLI 493

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKS 625
                   E+G+       +++           + +       +             E  
Sbjct: 494 TYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHE 553

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++ ++    ++ L F  + L G+ EG++P                ++L+   +   +  
Sbjct: 554 DSIQLMTLHSAKGLEFPHVFLVGMEEGLFP--------------HKMSLEEPGRLEEERR 599

Query: 686 HDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             +       + L+ T +       +     + R +          ++
Sbjct: 600 LAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVR 647


>gi|88855836|ref|ZP_01130499.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
 gi|88815160|gb|EAR25019.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
          Length = 799

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 83/711 (11%), Positives = 184/711 (25%), Gaps = 95/711 (13%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           +L   +    R     P   + +     T +A  E+R     I G  +  +  I +    
Sbjct: 55  VLTRRIAGLLRSQEAWP---SQILAITFTNKAAAEMRERVAAIVGNAAEGM-WISTFHSA 110

Query: 85  VEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
                  +              +      L R++      +  +           L    
Sbjct: 111 CVRILRREAEAFGFSKNFTIYDSADSKALLKRILKELDADMYGLTVSKAANRISGLKNEL 170

Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
            +    A++ A++ D  E                          FL+   + +T  L + 
Sbjct: 171 TDVDGFARD-ANLSDPAE------------------------KKFLE-VFRRYTRGLSDA 204

Query: 203 NASS------PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           NA           Y        A    +     I++     +  A   L+  +   P   
Sbjct: 205 NAFDFDDLIGQTVYLFRAFPHIAATYQR-RFKHILVDEYQDTNHAQYSLIRELTRPPAPE 263

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                     P  +    T +    + +    S    Y+         ++ E       V
Sbjct: 264 QF-----ETSPGVLVQGSTNELEAASLTVVGDSDQSIYAFRGADIRNIVEFERDFPRSTV 318

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
              +              +     N D  + K+         +      +  +EA  +A 
Sbjct: 319 I-LLEQNYRSTQTILDAANAVISHNFDRKDKKLFTTVGAGDKIVGFTGYSGHDEAQFVAD 377

Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            ++   DE    K  A+     +  R ++    R  +   +  G               L
Sbjct: 378 EIQKMHDEGVAYKDVAVFYRTNSQTRALEEIFIRAALPYRVLGGTKFYERAEIKDAFGYL 437

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            A+    D +A+  ++  P    G   +   +A      + LR    +   + L      
Sbjct: 438 IAVANPADPLALRRIMNTPKRGIGPATEAALQAWADDRGMTLRDAMRNAGELGL------ 491

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                               +  +  V L   + + +  + T K  +        +++  
Sbjct: 492 ------------------GPKVTKAIVDLARLLDEVMAKVETAKPAEI-------LTELL 526

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           + +          + +        +E   ++  F                 ID +T +  
Sbjct: 527 ERSGYVRVLRSSLDPQDEARAENVDELIAVTKEF--------GKNNPDGTLIDFLTEVSL 578

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                   + S T+ ++    ++ L +D + L G+ E         +    R+  ++   
Sbjct: 579 VAAADDLDDSSGTVSLMTLHTAKGLEYDAVFLTGVEE---------DLLPHRMSANEPGG 629

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
              E+ +               L  TR+        + SR+LQ +      
Sbjct: 630 PAEERRLFYVGITRARKRLFLSLAMTRAQFGEVNVAMPSRYLQEIPADLIE 680


>gi|134093954|ref|YP_001099029.1| putative exonuclease V [Herminiimonas arsenicoxydans]
 gi|133737857|emb|CAL60902.1| putative ATP-dependent exoDNAse (exonuclease V) beta subunit RecB
            [Herminiimonas arsenicoxydans]
          Length = 1096

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 85/787 (10%), Positives = 187/787 (23%), Gaps = 108/787 (13%)

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIP 240
                + +     E         +    R           +  +      +++     + P
Sbjct: 367  AAYLETYQAVKAEQRVFDFADLEWQAYRLLTNEEHAAYLQSRLDARYRHVLLDEFQDTNP 426

Query: 241  ATARLMSTV----ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
                ++        +  +   +    D       +     +  +                
Sbjct: 427  LQWSIVQAWLNAYGDDADKPSMFVVGDPKQSIYRFRRAEPRVFSAAKETLVAQGADFLRT 486

Query: 297  AKLLDFLDIKREDVKRLGNVSN---EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
             +         + +      +                +  P     +   ++ + +    
Sbjct: 487  NQTRRNAAGIVDVLNASFVANPIYQPQTTLEQSPGAVWQLPLVQQDKQEKVVWSPVQLRD 546

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRF 409
               +     E     EE  ++A+A+  +  E          L+   R   R  +  L   
Sbjct: 547  PLTTPREEEEDARRLEEGRAVALAILQARKELKSERWSDVMLLVKKRTHLRAYERALREA 606

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            GI         L  +L  + L +LLN +   +D +A+A ++K P+   G  E      + 
Sbjct: 607  GIPFASDKRGGLLESLEVADLIALLNFLITPHDNLALAHVLKSPIMAAGDDELIALAERR 666

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                      +   ++ +L S  L R A              L    +     L+D IL 
Sbjct: 667  EKTWWL----RLQAEVTELSSPALLRAAGLLE--------KWLHLAPRLPVHDLLDRILH 714

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                +  Y    +       + +    T   L                            
Sbjct: 715  EGDVVARYAQTASPLVRGQVLGNIEAFTELALNLDAGRYPSLPK-------FIDALRRLQ 767

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
            K  ++ +  +A+    +D +  L        K  ++  + +L    S     D  +L   
Sbjct: 768  KSADSDAPDEADIDAALDAVRIL---TIHGAKGLEAPIVVLLDANHSDGARDDVGVLCAW 824

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD----FEMANGTRHLIYTRSLRE 705
             +                  +  +   AE+   +   D    +      ++L+    + +
Sbjct: 825  PQDRDAPTHFSVFGRQAERGAARDTLFAEEEQLKQQEDWNLLYVATTRAKNLLIVSGVAD 884

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
            N   T+      R               +             T        P   P  + 
Sbjct: 885  NRSTTVNGVADGRWYARFQGAQ----PVQPDAQAAAAAATGETEFFLPIFNPPALPAPQI 940

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
            +P     S                                 D G   H ++  L   +  
Sbjct: 941  EPTAIFSSAE------------------------------IDEGIALHALMELLTPPQAW 970

Query: 826  KNTPEINHLMKQIID--SHFEKENLPPHIDIIWRHLFHKISH----SFLEHEEKIQSSIE 879
              T     L+ + +       +        I+ +    +        F  +E ++ SS  
Sbjct: 971  PITMHAPALIAKWLACTHEMAETISGQASVILAQPELARFFDPAQHRFARNEMEVVSSAG 1030

Query: 880  KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
                                   DR  ++    + I DYK       E+ +     QL  
Sbjct: 1031 VA-------------------RFDR-AVMFDDELWILDYK---RNLLESERAAYAAQLER 1067

Query: 940  EAAALKA 946
               A + 
Sbjct: 1068 YRVAAQQ 1074


>gi|167034114|ref|YP_001669345.1| hypothetical protein PputGB1_3117 [Pseudomonas putida GB-1]
 gi|166860602|gb|ABY99009.1| hypothetical protein PputGB1_3117 [Pseudomonas putida GB-1]
          Length = 874

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 66/614 (10%), Positives = 142/614 (23%), Gaps = 51/614 (8%)

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
                 P   +    V +++A          A  L  +L + ++   + TAD        
Sbjct: 198 AGAPVSPVPWQDDGSVRVVQAQTR----TLAATWLSRTLPQGRQTLLVATADGACLDSHL 253

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
               +    +  S+           +L   +  ++   ++  +   + HP+         
Sbjct: 254 AGANQARHGLSGSS----ILRPALQVLPLTMELLWAPLNYPVLLQFLTHPI-----NPVR 304

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
           L   +     ++        +   L   +         +          +          
Sbjct: 305 LFARRQLAAKISSMPGIVGAEWDRLLERISAYYGPDAPSVRTSIEHWLEAPTFSPDTGAP 364

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
           ++ +   +  L  +   +                  C   +      +   + F      
Sbjct: 365 LNEVQVRVQRLQAFFQLRLGHQDPAQRQAAQAGHGQCQAALQALAALEQQGVEFLR---- 420

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                 ++IE  +   ++           +        IE   T+         L     
Sbjct: 421 -PRQLQQVIEQATANGSDNPLLAAQAGAYLTVTRPGAAIEPVDTVTWWNLAMPAL----- 474

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLN--LKTAEKYIGQAAHDFEMANGTRHLIYTR 701
                          +          +DL   L  +   + QAA D+           T 
Sbjct: 475 ------------PARSPWSRAESRQWADLGVALPDSTAQLAQAAQDWLRPVLAARQQLTL 522

Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
            L            L   +V                 L   + L +           P  
Sbjct: 523 VLAPPQEEPHPLWQLIETVVSQPHVHALEDLMLAPGPLCQAQTL-HALPLRKRWWKLPAG 581

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
              A P   S++ +  L+ +PY    +   ++               G L H +      
Sbjct: 582 TPLAAPEKASYTSLNLLLFNPYHWLLQYGARIQASNSPSLSDSYRLNGALAHRLAERFF- 640

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL------FHKISHSFLEHEEKIQ 875
             +                +HFE+  L     ++ R                +       
Sbjct: 641 -NVPDALTMSTDAFDTWFATHFEQVVLEEGAVLLMRGRGADLATLRHRVRRAMIQLRSHF 699

Query: 876 SSIEKIFV--NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT-GDNPKKETAQKL 932
           +    + V    P           L G AD +    +    + D K  G     +  Q  
Sbjct: 700 ARANVVAVTTEQPLAGTFVGG--ALAGSADLVVTTANELRAVVDMKWAGGKKYPDQLQAN 757

Query: 933 IDPQLSLEAAALKA 946
              QL++ A  L+ 
Sbjct: 758 RHLQLAIYAELLQQ 771


>gi|68166247|gb|AAY88051.1| ATP-dependent deoxyribonuclease chain-like protein [Listeria
           welshimeri]
 gi|73697661|gb|AAZ81447.1| ATP-dependent deoxyribonuclease chain-like protein [Listeria
           welshimeri]
 gi|73697663|gb|AAZ81448.1| ATP-dependent deoxyribonuclease chain-like protein [Listeria
           welshimeri]
          Length = 430

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 103/359 (28%), Gaps = 29/359 (8%)

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
             L  +  L +     +       LA +   ++ EE    DL                  
Sbjct: 97  AALDQKDKLKIFSKATSRKGFYSELAKLFKEMKQEEVSVADLENSAI-NMSKSVTNKIHD 155

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           + +  + + E L            + L+  +        +  III G T        ++ 
Sbjct: 156 ISLIYQKYEELLA--GKFLENEDYLRLLADKIIESDYLNQTEIIIDGFTSFSKQELTVIE 213

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            + +  +   V   L+      I   + E S    S+         ++L ++     I  
Sbjct: 214 KLMHKCDKVTVSLTLNV---PEIQKGLEEYSMFKQSTEAY------FALLEMAKLNKISV 264

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
           E  K               ++  +                     ++   D+A+ +A+N 
Sbjct: 265 EPDKLFLENKRAKSDSLAFLADVWGNNKFV-------------TFEEKPQDLAIHQANNR 311

Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
           R E   IA  +R         +  A++T +  +     +  +  F I I I     ++  
Sbjct: 312 RAEIEGIAREIRQLTLNGYRYRDMAILTRNISDYDVLCETVMESFDIPIFIDKKRAMAKH 371

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNS 482
                + S ++AI     +  I   VK             + R  + LE   L     +
Sbjct: 372 PFIEFIRSSIDAILFNWKYEPIFQAVKTEFFFNVSENTSIMRRKADILENYVLENGIQN 430


>gi|68166253|gb|AAY88054.1| ATP-dependent deoxyribonuclease chain-like protein [Listeria
           seeligeri]
          Length = 430

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 107/359 (29%), Gaps = 29/359 (8%)

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
             L  +  L +     +       LA++   ++ EE    DL     +            
Sbjct: 97  AALDQKEKLKVFSRATSRKGFYSELANLFKEMKQEEVSITDLEE-SAKMLPTSVNNKVHD 155

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           + +  + + E L            + L+  +        +  III G          ++ 
Sbjct: 156 ISLIYQKYEELLA--GKFLENEDYLKLLADKIAESDYLNQTEIIIDGFNSFSKQELTVIE 213

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +    +   +   L+      I   + E S    S+         YSL +     +I  
Sbjct: 214 KLMQKCDKLTISLTLNV---PEIERGLEEFSMFRASTEAY------YSLLETAKLNNIPV 264

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
           E++K L             ++  +                   + Q   +++ + +A+N+
Sbjct: 265 EEIKLLLENKRAKTPSLEFLANVWGQNKF-------------ASFQGEITNLNIHQANNK 311

Query: 368 REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
           R E   IA  +R       +    A++T +  +     +  +  + I I I     ++  
Sbjct: 312 RAEIEGIAREIRELTSNGYRYKDIAILTRNLGDYDVLCETVMEDYNIPIFIDKKRTMAKH 371

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNS 482
                + S L+AI     +  I   VK             + R  + LE   L     +
Sbjct: 372 PFIEFIRSSLDAIQFNWKYEPIFQAVKTEFFFDSTEDAADMRRKSDILENYVLENGIQN 430


>gi|302521800|ref|ZP_07274142.1| LOW QUALITY PROTEIN: helicase [Streptomyces sp. SPB78]
 gi|302430695|gb|EFL02511.1| LOW QUALITY PROTEIN: helicase [Streptomyces sp. SPB78]
          Length = 394

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/408 (10%), Positives = 99/408 (24%), Gaps = 21/408 (5%)

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                 LH   +      W  AA FL         + V   A       +   R +    
Sbjct: 2   GLDPAALHRFASRTGRPDWQAAAAFLAEYLDVLDLQGVIDYAELVHRADLLARRPDVAKD 61

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           +      + +     + PA  RL+  +A    G  +L   D       +           
Sbjct: 62  LAQAYDAVYVDEYQDTDPAQVRLLEALAG--QGRTLLAFGDPDQSIYAFRGADVNGILDF 119

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                                      V  L                  L    + +   
Sbjct: 120 PDTF--------------RTTGGAPAPVAVLPTARRAARRVLDATRALALRIPLTRLPAA 165

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLA 399
            +  ++     +      +    +   E   +A  LR +  E+       A++    +  
Sbjct: 166 AVRAHRDQLPTRDGGSAEVYTCPSPGAETDHVADLLRRAHLEDDVPWGDMAVLLRAGSRL 225

Query: 400 RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
             ++  LT  G+ +D +    PL        L + L    +           + P     
Sbjct: 226 PALRRSLTAAGVPVDTAGDELPLRLEPAVQPLLTALRVTAEAEARGETPQAGETPPVGET 285

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
              +  S      + V     +   +  +++ + L + + + +          L+     
Sbjct: 286 PAGEGESGPVPEGDSVPEAEGEPVPEG-EIQPVPLPQPSPEPSWIATETAVDLLASPLCG 344

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
           +    +  + + +        N      ++ ++         + +   
Sbjct: 345 MDAADLRRLGRALRAEERAGGNPVPPPSDVLLARALAEPERLIAHDAA 392


>gi|329119934|ref|ZP_08248608.1| exodeoxyribonuclease V beta subunit [Neisseria bacilliformis ATCC
            BAA-1200]
 gi|327464090|gb|EGF10401.1| exodeoxyribonuclease V beta subunit [Neisseria bacilliformis ATCC
            BAA-1200]
          Length = 1265

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 92/835 (11%), Positives = 210/835 (25%), Gaps = 57/835 (6%)

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII--------IAGST 236
             DFL+   +    +       SP    + L  A             +        I    
Sbjct: 413  LDFLQYVRQTADAQRQTRQTRSPDDLLLDLYHALTAGAHSEQLAQTVAQNWPFALIDEFQ 472

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---THPQ 293
             + P    +   +    NG  +    D       +      +    +++T       H  
Sbjct: 473  DTDPLQYEIFRRIF-VANGRPLFLVGDPKQAIYGFRGADIHAYLQAAADTPNRYTLAHNY 531

Query: 294  YSLAKLLDFLD-IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
             S ++L D +  +     +            S   ++S + P    +R   +        
Sbjct: 532  RSHSRLTDTVGSLFTRKNRPFVLEGIAYPAVSAPRAESRVSPPQPAVRVRWLHGADETEA 591

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDENKK------KSALITADRNLARRVKLEL 406
             K    +    AD   +E  ++                   + A++    N  R VK  L
Sbjct: 592  NK--DTLRQRAADYCADEIAALLNLAAEGRLNVNGCPAESGQIAVLVHSHNQGRMVKRAL 649

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
                I         +  +  +  L +LL+   +      +  ++   L      E Y   
Sbjct: 650  AARNIRSVSVQRESVFQSPEAQALAALLDFWLEPRRAEPLRFVLGGVLFSRTAQELYELN 709

Query: 467  AKNALELVALRGNKNSYDIM---DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                     +   +   +I     + + +          T +   ++  S  +      L
Sbjct: 710  RNEKSLSEHIAAAEQCREIWQRQGIYAALTAFARRYGLETRLLAQRNERSLTNFWQLAEL 769

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
            +    +      + +    S   + S ++ T L +   + +                   
Sbjct: 770  LAAEDEAAHSPPSLRNWLLSQMQDASAAENTVLRLESDEALVKIVTIHASKGLQYPFVFC 829

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
              S  +                 +++     GE  + ++        L  L   L   + 
Sbjct: 830  PFSWDTSEARGAMWHILRREHGSELLAAAQLGEADQNQLADEDLGERLRLLYVALTRAEE 889

Query: 644  LILGGLNEGVWPKNTAKNPFL----SRVMQSDLNLKTAEKYIGQAAHDFEMA------NG 693
             ++         KN+  N F      R   +   ++TA   +   A              
Sbjct: 890  QLVLYAAACKSKKNSRLNTFAYLLAGRPDDTRAQVQTACASVENPAALLRQNWLDWIDAA 949

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
              + +  +           SR                   R   +   TR L ++  Q  
Sbjct: 950  PANAVLWQEGAPPAAVLRPSRPRTSEYRAAEYPPRRFEFVRHTSFTGLTRSLAHSGTQDE 1009

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY---ARRILKLDF-IPHFKKDPDRTDRG 809
                       A+      S            +   A+  + L   +   +      ++ 
Sbjct: 1010 TADEMQPALDNAERLPLPESAPDAPAAYDIFHFPQGAQAGVCLHEILEKHRFGRPAAEQH 1069

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
             L  + +         +  P +   ++   D+   + +    +  + R         F +
Sbjct: 1070 PLIADTLERY--GYGAEWLPAVAQTVQHTADADLWRGDTLAALPGVRRISETGFVMHFDQ 1127

Query: 870  HEEKI------QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
             +          + +    +    K+   ++   L G+ D   LL  G   + DYK+   
Sbjct: 1128 LDTGRLKNSLAAAGLSPACLAAAEKLDFGTLKGFLNGYIDMTCLLSDGQPCVIDYKSNHL 1187

Query: 924  PKKET-----------AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
              +             A+     Q  + A A       +        + Y+ L+ 
Sbjct: 1188 GHRPEDYAPAALDAAMAEHHYYLQAWIYALAAARMLQQRRHPVSTVRVRYLFLRG 1242


>gi|240117506|ref|ZP_04731568.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID1]
 gi|268603206|ref|ZP_06137373.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID1]
 gi|268587337|gb|EEZ52013.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID1]
          Length = 1200

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 91/933 (9%), Positives = 222/933 (23%), Gaps = 117/933 (12%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
            +L  L      +L  +  D             A      + LAD         +    L 
Sbjct: 287  QLPCLDKDTHERLLKLSSDKLEAGLKKGKTPDAAVFAELQKLADF-------GRDLNALE 339

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG----------YQIALMRAEAE 220
              +        L   ++L  +     +   E      +           +   L RA AE
Sbjct: 340  EAEEATMIRLQLDLIEYLNSSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAE 399

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
            +         +I     + P    +   +        +    D       +         
Sbjct: 400  NWEIA-----LIDEFQDTDPLQYEIFQKIF-IARNRPLFLVGDPKQAIYSFRGADIY-AY 452

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
            + ++      +   +  +    L      + RL      +         +         +
Sbjct: 453  LQAAEDARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPK 512

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS----LDENKKK-----SAL 391
               +    +       ++  ++        A  IA AL  +    L+   +       A+
Sbjct: 513  RPAVQLRWLHENDNEKANKDVLRRRAADYCADEIARALNEASGGRLNFKGRPLQSGDIAV 572

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +    N A  +   L +  +   + +   +  +  ++ L++L+    +      +  ++ 
Sbjct: 573  LVRTHNEAVMISAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLT 632

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
              +  +   +               +         +     LD          +  +   
Sbjct: 633  SGIFGYDAQQL----------HDFNQNESEILHWAESARTALDIWQKYGIFAAMQQFSQT 682

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
               E + L+      +      L              ++  W +  ++   N   D    
Sbjct: 683  HGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNGGDNRAI 742

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--TVKPKIEKSSTLF 629
                   E  + L  + +     G         +          +   +     ++  L 
Sbjct: 743  R-----LESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAELLA 797

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                 ES    +    +      ++   T     L+  + +  +  TA+  +        
Sbjct: 798  KAQLSESEQKQYADEEMAERLRLLYVALTRAEEQLN--IYAAYSSDTADNPLAYLIEGLP 855

Query: 690  MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
              +    +  T +  ++ I  +  R  +R+             +       +    D   
Sbjct: 856  Q-DSRETVRRTYACEKDGITMLK-RNWRRVADNAPAGTDFAFTEDAPPPAAYRGNADQAA 913

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQ------LINDPYAVYARRILKLDFIPHFKKD- 802
            +      P+            + S   Q          P    A   +            
Sbjct: 914  EFAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPSETPTASD 973

Query: 803  -------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                   P  T  G   H I+ +    +  +   E   L+   +  +  +E   P +  +
Sbjct: 974  GISIHDFPKGTQAGLCLHEILEDF---KFGQAAAEQETLIADKLKKYGFEEIWLPAVAEM 1030

Query: 856  WRHLFH--------------------------------KISHSFLEHEEKIQSSIEKIFV 883
                                                  K    +L  ++     + +   
Sbjct: 1031 AEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRLPEVCRAAA 1090

Query: 884  NIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYK-------TGDNPKKETAQKLID 934
                   I+   ++  L GF D +     G + I DYK       T     +  A +   
Sbjct: 1091 E-----TIDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQHYY 1145

Query: 935  PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
             Q  + A A       +       ++ Y+ L+ 
Sbjct: 1146 LQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|68166249|gb|AAY88052.1| ATP-dependent deoxyribonuclease chain-like protein [Listeria
           seeligeri]
          Length = 430

 Score = 71.5 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 107/359 (29%), Gaps = 29/359 (8%)

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
             L  +  L +     +       LA++   ++ EE    DL     +            
Sbjct: 97  AALDQKEKLKVFSRATSRKGFYSELANLFKEMKQEEVSITDLEE-SAKMLPTSVNNKVHD 155

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           + +  + + E L            + L+  +        +  III G          ++ 
Sbjct: 156 ISLIYQKYEELLA--GKFLENEDYLKLLADKIAESDYLNQTEIIIDGFNSFSKQELTVIE 213

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +    +   +   L+      I   + E S    S+         YSL +     +I  
Sbjct: 214 KLMQKCDKLTISLTLNV---PEIERGLEEFSMFRASTEAY------YSLLETAKLNNIPV 264

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
           E++K L             ++  +                   + Q   +++ + +A+N+
Sbjct: 265 EEIKLLLENKRAKTPPLEFLANVWGQNKF-------------ASFQGETTNLNIHQANNK 311

Query: 368 REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
           R E   IA  +R       +    A++T +  +     +  +  + I I I     ++  
Sbjct: 312 RAEIEGIAREIRELTSNGYRYKDIAILTRNLGDYDVLCETVMEDYNIPIFIDKKRAMAKH 371

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG-FPEKYLSRAKNALELVALRGNKNS 482
                + S L+AI     +  I   VK             + R  + LE   L     +
Sbjct: 372 PFIEFIRSSLDAIQFNWKYEPIFQAVKTEFFFDSAENAADMRRKSDILENYVLENGIQN 430


>gi|327482729|gb|AEA86039.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri DSM 4166]
          Length = 1182

 Score = 71.5 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 79/909 (8%), Positives = 220/909 (24%), Gaps = 105/909 (11%)

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
             ++L     +                       L E  A+  +     L+    + L   
Sbjct: 297  LDELADQVADALPAGKQRLIALQVALLDRLNRELPERKAAQRLLAFDDLLNRLDQALQGP 356

Query: 226  TKGPI-----------IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
                +           +I     + P    + + +      A +    D       +   
Sbjct: 357  VGEDLAASLRATYPLALIDEFQDTDPIQYAIFNRIYAKGRDASLCFVGDPKQAIYAFRGA 416

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP- 333
               +                +  +    L      +        +   R   +  +  P 
Sbjct: 417  DLATYMTAKQQADREPFNLPTNYRSTPELIAALNQLFDHPQPFAQPDLRYPAVGAADKPR 476

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---------- 383
                     +     +  +       A        + A  IA+ L  + +          
Sbjct: 477  ASLRLAEEGEAAPLSLVWLGDDPLGKAEAAQLAAADTARRIAVQLAAAAEGRAGFAQGDR 536

Query: 384  ---ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                     A++ A+   A  +  EL   G+         +  +  +  L ++L A  + 
Sbjct: 537  FTPLKGGDIAVLVANHRQAGMIADELAARGVPSVRRGRDSVWRSEEAGELAAVLAAYAEP 596

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD-------LKSLVL 493
                 +   +   L      +    +             +  + +          ++ + 
Sbjct: 597  GREGLLRHALATRLLGRSAADLARCQDDQHEWDAEREAAERYHQLWQQQGFMRVFRAWLD 656

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
            ++   ++  T V   +   +       +     +   + PL+ +   +  + G  +  + 
Sbjct: 657  EQAVAERLLTRVDGERRLTNLLHLGELLQAESLLRPGLEPLLAWFNAQRGSEG--AGEEA 714

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII---ETGSCIKANAIEWIDIIT 610
                 +  + V +        L +             +    ++  C  A+    +D+ +
Sbjct: 715  LLRLESDAERVQIVTIHTSKGLEYPLVFCPFLWDGKLLGKNQDSARCHDADGQPLLDLGS 774

Query: 611  RLIDG------ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
              ++       + V  +  + + + +    +   L++  + L    +     +   +   
Sbjct: 775  GELEDNLERARQEVFAEQLRLAYVALTRARDRLWLHWGPVSLPKAKKDGSLPDEGLHSSA 834

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
               +     L   +       H   +  G+  L   R +  ++          R     G
Sbjct: 835  LAWLLHGRELPGEQPLTELGNHLAGLNGGSLRLAIERLVATSDGRMACLPLESREASTQG 894

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
            +                              +         +  ++S       +  P  
Sbjct: 895  SS--------------------RAAPPEQLAQLNRSLYSAWRIGSFSGLAAGMHMEAPDR 934

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                     +    F   P     GT  H I+ +   +   + T  +   +K        
Sbjct: 935  DALAMPDAGEPGSGFFAFPRGARAGTCLHAILED-WARGKGELTQLVEPALKAYGLPLDW 993

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQ----------SSIEKIFV----------- 883
            ++     ++ + +        +    +   +            ++ + +           
Sbjct: 994  RDIATAQLERVLQTDLDGAGLTLASLQAARRLPELGFTFPVRELDVVRLRTLLTDPANGL 1053

Query: 884  -----NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT-----------GDNPKKE 927
                    A++  +S+   L GF D       G   I DYK+           G+   + 
Sbjct: 1054 AAPLREAAARLEFDSLKGFLKGFIDLTFEHG-GRWYIADYKSNWLGPEASYYGGERLLQA 1112

Query: 928  TAQKLIDPQLSLEAAALK---AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984
             A +    Q  +   AL+       +     ++   FY+ L+   +             D
Sbjct: 1113 LAGEHYYLQYLIYLVALRRFLRQRLADFRDEQLGGAFYLFLRGMPEAGVYFARPDDALLD 1172

Query: 985  ELSEKSLKN 993
             L     + 
Sbjct: 1173 ALDRLFEEG 1181


>gi|319949237|ref|ZP_08023321.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
 gi|319437104|gb|EFV92140.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
          Length = 519

 Score = 71.5 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/526 (9%), Positives = 120/526 (22%), Gaps = 115/526 (21%)

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                    +  +   ++       E+   L  + +             + ++D+   + 
Sbjct: 5   AAAEQALGLDAEVRLRQRAGGGEAREQLDALQEVAAGFRPERGTGLDAFLAYLDLARSID 64

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK------------- 660
            G            + IL    ++ L ++ + +  L +GV+P                  
Sbjct: 65  GGLARGEVASTPGRVQILTVHSAKGLEWEIVAVPHLADGVFPSGQPPQTSVRTATQLPEQ 124

Query: 661 ------------------------NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
                                      L   +   +               +        
Sbjct: 125 LRGDRETEDNPGGVPVPRLDGVTDRKLLEEALGKHIKRVERRSLDEDRRLFYVAVTRAEQ 184

Query: 697 LIY---TRSLRENNIPTIASRWLQRLLVLGGTDF------------------------FD 729
            +    +  L     P   S +L   L   G +                           
Sbjct: 185 TLLLSGSHWLGSATTPKGPSEFLGDALDACGGEPPLGVIDHLVVTPSPTNPATAGTVEAT 244

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR--------------------- 768
             ++     L   R ++         +  P      +                       
Sbjct: 245 WPREAAPDRLAAARAVETAVPVDPEAQAPPESGPARRWHLAAASLLADARRAAQRRDEVH 304

Query: 769 ---TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
                +  EI  +  DP    A R+ +       +       RGT FH  +         
Sbjct: 305 LPRRLTAGEIVAMATDPAEF-ADRLRRPVPFRPDR----FARRGTRFHAWLEHRYGATHL 359

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
            +  ++     +       + +L    +      + ++                   V +
Sbjct: 360 LDIDDLPGAGDEGAVDGLSEADLTALQEAFEASRWARM---------------TPEAVEV 404

Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
           P +  +   G  L G  D +     G   + D+KTG  P +      +  QL++   A  
Sbjct: 405 PFE--VGLGGHLLRGRMDAVFADGDG-WIVVDWKTGRVPAERDMPA-VALQLAVYRYAWA 460

Query: 946 AGSFSQID---CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
               +++            +  ++    I+       +     L+E
Sbjct: 461 KVVGARLGRTVELGSVRAAFHYVRSGRTIEPAGLPDAEELLRILAE 506


>gi|66968450|gb|AAY59604.1| ATP-dependent deoxyribonuclease chain-like [Listeria seeligeri]
          Length = 430

 Score = 71.5 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 107/359 (29%), Gaps = 29/359 (8%)

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
             L  +  L +     +       LA++   ++ EE    DL     +            
Sbjct: 97  AALDQKEKLKVFSRATSRKGFYSELANLFKEMKQEEVSITDLEE-SAKMLPTSVNNKVHD 155

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           + +  + + E L            + L+  +        +  III G          ++ 
Sbjct: 156 ISLIYQKYEELLA--GKFLENEDYLKLLADKIAESDYLNQTEIIIDGFNSLSKQELTVIE 213

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +    +   +   L+      I   + E S    S+         YSL +     +I  
Sbjct: 214 KLMQKCDKLTISLTLNV---PEIERGLEEFSMFRASTEAY------YSLLETAKLNNIPV 264

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
           E++K L             ++  +                   + Q   +++ + +A+N+
Sbjct: 265 EEIKLLLENKRAKTPPLEFLANVWGQNKF-------------ASFQGETTNLNIHQANNK 311

Query: 368 REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
           R E   IA  +R       +    A++T +  +     +  +  + I I I     ++  
Sbjct: 312 RAEIEGIAREIRELTSNGYRYKDIAILTRNLGDYDVLCETVMEDYNIPIFIDKKRAMAKH 371

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG-FPEKYLSRAKNALELVALRGNKNS 482
                + S L+AI     +  I   VK             + R  + LE   L     +
Sbjct: 372 PFIEFIRSSLDAIQFNWKYEPIFQAVKTEFFFDSAENAADMRRKSDILENYVLENGIQN 430


>gi|289625507|ref|ZP_06458461.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649762|ref|ZP_06481105.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330870933|gb|EGH05642.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330986942|gb|EGH85045.1| DNA-dependent helicase II [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 727

 Score = 71.5 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 62/708 (8%), Positives = 163/708 (23%), Gaps = 163/708 (23%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           ++ R L LA        +L+ R      ++   P S LS+  +   A  +   +  ++  
Sbjct: 23  SLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  ISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRLVKRVMRELGLDEQRWPA 141

Query: 198 RLVE---LNASSPVGY----------------------------------QIALMRAEAE 220
           R  +                                                 L+RA   
Sbjct: 142 RQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDL 201

Query: 221 HLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            +++     +       +  +A   +  +V+   D       W 
Sbjct: 202 WRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++ +  SS+   +                              +       +    
Sbjct: 260 GAKIENIHQYSSDFPDTE--------------------------VIRLEQNYRSTASILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +   + N+  L  ++         + L  A NE +EA  +   +  +L    ++   A
Sbjct: 294 AANGLIVNNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + +  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                               +  ++        +      +     
Sbjct: 414 NVP-----------------------ARGIGEKTVEAIREHARHADVSMWEAMRLLVANK 450

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            L+          ++ I      ++                    L +     +      
Sbjct: 451 GLTGRAATALGGFIELIENLSAKVMEMP-----------------LHLMTQTVIEQSGLI 493

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKS 625
                   E+G+       +++           + +       +             E  
Sbjct: 494 TYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHE 553

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++ ++    ++ L F  + L G+ EG++P                ++L+   +   +  
Sbjct: 554 DSIQLMTLHSAKGLEFPHVFLVGMEEGLFP--------------HKMSLEEPGRLEEERR 599

Query: 686 HDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             +       + L+ T +       +     + R +          ++
Sbjct: 600 LAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVR 647


>gi|218885868|ref|YP_002435189.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756822|gb|ACL07721.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1161

 Score = 71.5 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 56/725 (7%), Positives = 148/725 (20%), Gaps = 51/725 (7%)

Query: 226  TKGPIIIAGSTGSIPATARLMS--TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                ++I     +       +    V     G  +    D       W        +   
Sbjct: 396  RLAHVLIDEFQDTSRDQWAAIEPLAVECLSRGGGLTWVGDVKQAIYGWRGGDSALFDDIL 455

Query: 284  SNTTYST---HPQYSL--AKLLDFLDIKREDVKRLGNVSNEMYGRSM-----------VI 327
            ++   +     PQ             I R +      + + +  R +            +
Sbjct: 456  ASPALTAIVPDPQRETLPRNWRSRAAIVRHNNTVFAQLDDPLRARGVLSAMLGDKTPDHV 515

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM------S 381
                                   + Q     +  +  ++  +    +   LR       +
Sbjct: 516  LDEAAASVARAFAGAAQEVPDRDSAQGGLVRIVPVHGEDNGDLRDKVRQQLRALFMDDLA 575

Query: 382  LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                 +  A++    + + +V   L  +G+ +     + L+     +   +LL  +    
Sbjct: 576  ARRPWRDVAVLVRKNDESAQVASWLMDWGVPVVTENSLRLADHPLVTQTVALLAFLDYPP 635

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
            + +A+  ++       G         ++ L     R   +      L +           
Sbjct: 636  NALALWEVLTGVELFGGISGLSDHALRDWLADRCARPADDPRGGKGLLADFRATFPVAWE 695

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI-SDWTKLTVTC 560
                P +         +    + +               +       +  S       T 
Sbjct: 696  TWLAPFYARAGLMGPYDTVREIFERFRVAQRHPEDIGYVRRFLEVVHNAESRGLTSLATF 755

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
            L+        +   +    +   + ++          +        D     +    +  
Sbjct: 756  LEFWVESGGEEKVPMPEAMDAVRVMTMHKSKGLEFPVVVIPFHHQPDRTDPPLVVAELDG 815

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
            +   +     +G                L    W +   +            +   AE+ 
Sbjct: 816  QPLLAPLCPEMGDRYHHAQAAAAAEKLHLLYVGWTRPVDELHAY------VTSTPFAERS 869

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                A    +  G                   +R           D  +  +        
Sbjct: 870  SSLLAGVRALLTG---CAIDTGQEYVAGVVPPARATDAHAGSDTEDTREAPRDEAAAQAA 926

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                              P P            ++         +     LK+      +
Sbjct: 927  PPDAPQAVPAPLPSPARAPAPGPLPGHAAAHAPDLPSPAAPWRPMQWLPRLKIFRNQLEE 986

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
                   RG L H  + +L   R+     +            F      P          
Sbjct: 987  FTFTERRRGMLVHACLEQL---RLTGTPDQDAARAVAHGMRAFPLPVPDPEATANE---L 1040

Query: 861  HKISHSFLEHEEKIQSS--IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
              +        +              + A+ +I    + +                + ++
Sbjct: 1041 TAMLAWLAALPQAAHWFTHGVPEQSIMDAQGSIHRTDLMV---------DDGETCTVVEW 1091

Query: 919  KTGDN 923
            KTG  
Sbjct: 1092 KTGRP 1096


>gi|184156771|ref|YP_001845110.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii ACICU]
 gi|332873183|ref|ZP_08441140.1| UvrD/REP helicase [Acinetobacter baumannii 6014059]
 gi|183208365|gb|ACC55763.1| Superfamily I DNA and RNA helicase [Acinetobacter baumannii ACICU]
 gi|322506663|gb|ADX02117.1| ATP-dependent DNA helicase [Acinetobacter baumannii 1656-2]
 gi|323516538|gb|ADX90919.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332738695|gb|EGJ69565.1| UvrD/REP helicase [Acinetobacter baumannii 6014059]
          Length = 659

 Score = 71.5 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 65/572 (11%), Positives = 144/572 (25%), Gaps = 63/572 (11%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    Y     L    + I   T+RA  E+ +   +  G ++  L    +       
Sbjct: 37  KTIVARAAYLIDQGLPANQIQILTFTRRAASEIVARVEQHVGAQAKGL-RASTFHTFCMY 95

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +          + +    L + RL+     K  D +     E       +      
Sbjct: 96  LLRRNPQAFGLTQFSIIDRDDQLLMFRLLRG---KDKDNVLPKAAELCDLYSYARNTQSK 152

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
           L++ L   +      +     +  L       +     +            L   +  S 
Sbjct: 153 LSEALLKQLPEAYEYK---SQIAEL----MKTYEQRKRE---------RNFLDYDDILSI 196

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
           V   +    A    +  G    +++     + P    L+  +        +    D    
Sbjct: 197 VAVHLQNSEALTNWV-AGFCQALLVDEMQDTNPLQWALLQPLIGKVK---LFCVGDDAQS 252

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +     ++ +                  ++  LD+     + + ++SN +   S + 
Sbjct: 253 IYGFRGADFENIHSFKERIPD---------AVIHTLDLNYRSTQEILDLSNWLLAHSPID 303

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
            +  L       +                    L    NE EEA  IA  L     +   
Sbjct: 304 YQKQLQAHRGKGQKPQ-----------------LHLFGNEFEEANWIAQDLIERHQQGAN 346

Query: 388 KS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                ++      AR ++       I      G+ L  + H   + SLL  +    D +A
Sbjct: 347 WYDHMVLVRSGYSARYLEGAFIAAEIPYRFIGGVKLLESAHVKDVLSLLRIVSNPQDDLA 406

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
               +       G  +   S+    L  ++    +        K  +            +
Sbjct: 407 WMRFLT---LWDGIGDVGASKLAQELMSISEVEERCERLERHGKVPLQ--------AILI 455

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                 L +  +    L +D + + +      K           +    +   +  + + 
Sbjct: 456 LKQLDVLQQHVEASIGLALDALSEQLEQNYKTKDWSRRARDFDLVKQLARKHASLGEFLE 515

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                 +     E+ G         I      
Sbjct: 516 EYVLEPISISEIEKAGDDDLVTLITIHSAKGA 547


>gi|76799133|ref|ZP_00781319.1| exonuclease RexB [Streptococcus agalactiae 18RS21]
 gi|76585519|gb|EAO62091.1| exonuclease RexB [Streptococcus agalactiae 18RS21]
          Length = 379

 Score = 71.5 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/374 (11%), Positives = 91/374 (24%), Gaps = 64/374 (17%)

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           E  KT + +  +        K N  E++ ++   +     +        + +        
Sbjct: 8   EVWKTFTDILEQFQTIFGQEKLNLDEFLSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEP 67

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMA 691
            +   +   G+ +  +PK       +S + +                       + F   
Sbjct: 68  HSNQFVYALGMTQSHFPKIAQNKSLISDIERQLINDANDTDGHFDIMTQENLKKNHFAAL 127

Query: 692 ----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT---------------------- 725
                  + L+ T     N      S +L  L  +G                        
Sbjct: 128 SLFNAAKQELVLTIPQLLNESEDQMSPYLVELRDIGVPFNHKGRQSLKEEADNIGNYKAL 187

Query: 726 ----------DFFDNLKKRGQC-YLDWTRKLDYTTKQPHYKRP---------------KP 759
                          + K  Q  +    R L         + P                 
Sbjct: 188 LSRVVDLYRSAIDKEMTKEEQTFWSVAVRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMT 247

Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
               E  P   S S +    N+ Y  + + +L L+        PD    GT  H +   L
Sbjct: 248 RRFPEDDPLKLSSSALTTFYNNQYKYFLQYVLGLEEQDSIH--PDMRHHGTYLHRVFEIL 305

Query: 820 IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
           +K +  ++  E  +        +  F+              +   I+ +      +  S 
Sbjct: 306 MKNQGIESFEEKLNSAINKTNQEDVFKSLYSEDAESRYSLEILEDIARATATILRQD-SQ 364

Query: 878 IEKIFVNIPAKMAI 891
           +         ++ I
Sbjct: 365 MTVESEEERFELMI 378


>gi|320321765|gb|EFW77863.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320331515|gb|EFW87455.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 727

 Score = 71.5 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 63/708 (8%), Positives = 165/708 (23%), Gaps = 163/708 (23%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           ++ R L LA        +L+ R      ++   P S LS+  +   A  +   +  ++  
Sbjct: 23  SLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  ISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRLVKRVMRELGLDEQRWPA 141

Query: 198 RLVE---LNASSPVGY----------------------------------QIALMRAEAE 220
           R  +                                                 L+RA   
Sbjct: 142 RQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDL 201

Query: 221 HLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            +++     +       +  +A   +  +V+   D       W 
Sbjct: 202 WRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++ +  SS+   +                              +       +    
Sbjct: 260 GAKIENIHQYSSDFPDTE--------------------------VIRLEQNYRSTASILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +   + N+  L  ++         + L  A NE +EA  +   +  +L    ++   A
Sbjct: 294 AANGLIVNNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + +  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                 +    +   +      D+      R+              
Sbjct: 414 NVP--------------ARGIGEKTVEAIREHARHADVSMWEAMRLLVANKG-------- 451

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                       L       +   +    N ++    + +       +     +      
Sbjct: 452 ------------LTGRAATALGGFIELIENLSAKAMEMPL------HLMTQTVIEQSGLI 493

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKS 625
                   E+G+       +++           + +       +             E  
Sbjct: 494 TYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHE 553

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++ ++    ++ L F  + L G+ EG++P                ++L+   +   +  
Sbjct: 554 DSIQLMTLHSAKGLEFPHVFLVGMEEGLFP--------------HKMSLEEPGRLEEERR 599

Query: 686 HDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             +       + L+ T +       +     + R +          ++
Sbjct: 600 LAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVR 647


>gi|114565594|ref|YP_752748.1| hypothetical protein Swol_0018 [Syntrophomonas wolfei subsp. wolfei
            str. Goettingen]
 gi|114336529|gb|ABI67377.1| hypothetical protein Swol_0018 [Syntrophomonas wolfei subsp. wolfei
            str. Goettingen]
          Length = 166

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 55/175 (31%), Gaps = 18/175 (10%)

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                  H  +    ++      +   +  ++ I+     ++G  D I+L     + I D+
Sbjct: 8    RARDTIHDRIMILNELGIFNVPVETEVDVELQIDGN--TVSGIVDGIELHPDSGIIIRDW 65

Query: 919  KTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978
            K+      E   K  + QL     AL          ++V++   + + +  +   +   +
Sbjct: 66   KSSI---HEEFYKRYEKQLQFYTLALIE------QEKQVSSAQLVDVSKTIESKNLFTRE 116

Query: 979  KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA--RVA 1031
                   L E  +  L   +  +  G+           ++    +   L   RV 
Sbjct: 117  INIDPSSL-ESIVTELRAALKGILEGD----YRPNPKPETCFCCDMSRLCAERVD 166


>gi|330890591|gb|EGH23252.1| DNA-dependent helicase II [Pseudomonas syringae pv. mori str.
           301020]
          Length = 727

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 63/708 (8%), Positives = 166/708 (23%), Gaps = 163/708 (23%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           ++ R L LA        +L+ R      ++   P S LS+  +   A  +   +  ++  
Sbjct: 23  SLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  ISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRLVKRVMRELGLDEQRWPA 141

Query: 198 RLVE---LNASSPVGY----------------------------------QIALMRAEAE 220
           R  +                                                 L+RA   
Sbjct: 142 RQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDL 201

Query: 221 HLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            +++     +       +  +A   +  +V+   D       W 
Sbjct: 202 WRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++ +  SS+   +                              +       +    
Sbjct: 260 GAKIENIHQYSSDFPDTE--------------------------VIRLEQNYRSTASILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +   + N+  L  ++         + L  A NE +EA  +   +  +L    ++   A
Sbjct: 294 AANGLIVNNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + +  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                ++    +   +      D+      R+              
Sbjct: 414 NVP--------------ARSIGEKTVEAIREHARHADVSMWEAMRLLVANKG-------- 451

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                       L       +   +    N ++    + +       +     +      
Sbjct: 452 ------------LTGRAATALGGFIELIENLSAKVMEMPL------HLMTQTVIEQSGLI 493

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKS 625
                   E+G+       +++           + +       +             E  
Sbjct: 494 TYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHE 553

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++ ++    ++ L F  + L G+ EG++P                ++L+   +   +  
Sbjct: 554 DSIQLMTLHSAKGLEFPHVFLVGMEEGLFP--------------HKMSLEEPGRLEEERR 599

Query: 686 HDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             +       + L+ T +       +     + R +          ++
Sbjct: 600 LAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVR 647


>gi|229592597|ref|YP_002874716.1| exodeoxyribonuclease V subunit beta [Pseudomonas fluorescens SBW25]
 gi|229364463|emb|CAY52290.1| exodeoxyribonuclease V beta chain [Pseudomonas fluorescens SBW25]
          Length = 1224

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 108/946 (11%), Positives = 243/946 (25%), Gaps = 126/946 (13%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
               I  W         D+        P   A A          ID +   +   + L   
Sbjct: 270  FEKISAWAADETLEQLDIGTGFTRLTPDGMAEAWKGEPPQHPGIDAMAGLKAALDALPTP 329

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKG 228
                       AA ++    +    R  E+     +    A ++A+       +++    
Sbjct: 330  DAAVL----QHAAGWVGKRFEDEKRRRAEMGFDDMLIRLNAALQADGGERLASVIREQFP 385

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSN 285
              +I     + P    +  ++       +   +    D       +      +      +
Sbjct: 386  VALIDEFQDTDPVQYSIFDSIYRIEENHLDSGLFLIGDPKQAIYAFRGADIYTYLRARQS 445

Query: 286  TTYSTHPQYSLAKLLDFLDIK------REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            TT   H   +  +    +         R +  R   +  E  G + V   S L     + 
Sbjct: 446  TTGRHHTLGTNFRSSHAMVEAVNHVFQRAETGRGAFLFREPNGENPVPFHSVLSQGRKEQ 505

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN-------------- 385
               +       N+    +D  +  A   ++ A + A  +   L+                
Sbjct: 506  LQVNGQTLPAMNLWHLPTDQPVSNAVYRQQLAAACATHIVELLNGGQQGTAGFLRPDVSF 565

Query: 386  ----KKKSALITADRNLARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                    A++  D   A+ V+ EL  R   ++ +S    +     +  L + L A  + 
Sbjct: 566  TGVLPSDIAILVRDGKEAQAVRTELAARGVRSVYLSDKDSVFAAQEAHDLLAWLKACAEP 625

Query: 441  N---DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
            +      A    V   L+                 ++  RG +  +    +  ++   + 
Sbjct: 626  DVERPLRAALACVTLNLSLPELERLNQDELAWESRVMQFRGYRAIWRTQGVLPMLRRLLH 685

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              K    +             +A    + +L  +  L        S           +  
Sbjct: 686  DFKLPQTL-------------IARSDGERVLTNLLHLSELLQQAASELDGEQ--ALIRHL 730

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               L         ++  L  +E+   +       I     ++ + +    I +      +
Sbjct: 731  AEHLALSGQAGEEQILRLESDEQLVKVV-----TIHKSKGLEYDLVFLPFICSAKPVDGS 785

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD-LNLKT 676
              P           G     L     LI    NE +          L+R   +  L +  
Sbjct: 786  RLPLHYHDEH----GKSHVSLRPTPELIAQADNERLAEDLRLLYVALTRAKHACWLGIAD 841

Query: 677  AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
             ++    ++     A G        +          +RWL  L        +  + +   
Sbjct: 842  LKRGNSNSSVLHLSALG----YLLGAGASLGESAGLARWLLDLQAGCPAIDYAQVPEAQP 897

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR--TYSFSEIKQLINDPYAVYARRILKLD 794
                  R           KR        A         S     +  P +  A+++   +
Sbjct: 898  IVFHPPRNEATLRAPLLPKRKAAENWWIASYSALRIGDSMSAATLEAPESPQAQKLFDDE 957

Query: 795  FIPH------------FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL-------- 834
             +                + P   + GT  H ++    ++  N     I           
Sbjct: 958  RLDPDAPREVAASGGDIHRFPRGPNPGTFLHGLLEWAGEEGFNVTPEAIEKAVGARCNRR 1017

Query: 835  ------------MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
                        +  ++ +    +N    ++ + ++        +    +    +++K+ 
Sbjct: 1018 NWEGWIITLSGWLGHLLQTPLPVDNGHVSLNGLQQYQIE--MEFWFASHKVDVLALDKLV 1075

Query: 883  VN--IPAKMAIESIGIHL----TGFADRIDLLKSGFVDITDYKTG------DNPKKETAQ 930
                      + +  + L     GF D       G   + DYK+           ++  +
Sbjct: 1076 CQYTHSGVSRVAAEPVLLNGMFKGFIDLTFEH-DGRYYVADYKSNWLGPDDSAYTQDAME 1134

Query: 931  KL-----IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
            +       D Q  L   AL     +++      R V    Y+ L+ 
Sbjct: 1135 QSILEHRYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYLFLRG 1180


>gi|288919731|ref|ZP_06414058.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288348920|gb|EFC83170.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 733

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 65/675 (9%), Positives = 162/675 (24%), Gaps = 89/675 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E++     + G ++  +  + +          ++            
Sbjct: 122 GEILAITFTNKAAGEMKERVEALVGGRARAM-WVSTFHSACVRILRSEA----------- 169

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                   ARL       + D        + ++  +        AK LA  I  ++ E  
Sbjct: 170 --------ARLGFASSFSIYDAADAQRLLTLVTRDLDLDPKRHTAKALAVAISALKNELV 221

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
            WE       ++           +      + +RL + NA       +  +         
Sbjct: 222 DWET----ARDRAASHIERT---VAEVYASYQQRLAQANALDFDDLIMMTVNLLQAFPDV 274

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG------LDCHIPTAIWNT 273
               +     +++     +  A   L+  +   P  A                       
Sbjct: 275 AEHYRRRFRHVLVDEYQDTNHAQYVLVRELVGRPGPAGSAGAGSGAAEGQPGTGGDEGAG 334

Query: 274 ITEKSTNITSSNTTYSTHPQYSLA------------KLLDFLDIKREDVKRLGNVSNEMY 321
                             P   L             +  +  +I   +          + 
Sbjct: 335 PAGAGHGGGGPVPASGAVPPAELCVVGDADQSIYAFRGANIRNIVEFEQDYPNAAVILLE 394

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
                        +    RN      ++ +       +    ADNE +EA  +A  +   
Sbjct: 395 QNYRSTQTILSAANAVIARNAQRKAKRLWSDAGDGERIVGFVADNEHDEAAFVAEEIDRL 454

Query: 382 LDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
            D+        A+       +R  +    R G+   +  G+          L + L  + 
Sbjct: 455 SDDKLARPADVAVFYRTNAQSRVFEEIFIRVGLPYRVVGGVRFYERREIRDLLAYLRVLA 514

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
              D + +  ++  P    G   + +  A    E +                        
Sbjct: 515 NPTDTVNLRRILNVPRRGIGDRAEAMISAFAERERIPFAD-------------------- 554

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                         +    +    +     + +   V    +      +  ++    +  
Sbjct: 555 --------------ALARVDEVPGVATRSARSVRDFVALLGDLRDLLPSGPLAVIEAVLE 600

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                  L     +      E  + L  +  +  E       +  E+++ ++ + D + +
Sbjct: 601 RTGYLSELVAEDTIEAQGRVENLRELVGVVQEFTERRPDG--SLAEFLEQVSLVADADQI 658

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                    + ++    ++ L F  + L GL +GV+P             +  L      
Sbjct: 659 PDDDGSDGVVTLMTLHSAKGLEFPVVFLTGLEDGVFPHLRTLGDPTELEEERRLAYVGVT 718

Query: 679 KYIGQAAHDFEMANG 693
           +   +          
Sbjct: 719 RARARLYLTRAQVRS 733


>gi|124514962|gb|EAY56473.1| putative exodeoxyribonuclease V, gamma subunit [Leptospirillum
           rubarum]
 gi|206603904|gb|EDZ40384.1| Putative exodeoxyribonuclease V, gamma subunit [Leptospirillum sp.
           Group II '5-way CG']
          Length = 1095

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 84/734 (11%), Positives = 184/734 (25%), Gaps = 67/734 (9%)

Query: 37  DPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK---STILPIIKSLGDVVEEKFTADL 93
               P   + VTI        + L     ++ G     +T LP     G  + +      
Sbjct: 22  RDDPPPPWSPVTILPQNPTIGRWLTYRLADVQGVAMNIATPLP-----GAWIRDFLETGF 76

Query: 94  LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
             S  +       +R     RL+ I    L D          L         + L+  L+
Sbjct: 77  GRSGQVVH----FERNALFLRLLRILPA-LRDDPVFSEFRHYLGEGDPSRRLVSLSDELS 131

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG--YQ 211
           ++ D         E L +         W    + L   +  W     + + +      ++
Sbjct: 132 ELFDRAMLYR--PEWLTS---------WEDFPEDLSWPAVLWRNVAGKDHPAHFARLLHE 180

Query: 212 IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN--HPNGAIVLPGLDCHIPTA 269
              +        +     + + G +G  PAT  +   +                      
Sbjct: 181 FHSLPVLDSLWQEALPDRLFLFGLSGIAPATLDIFFRIGRETSCQVHFFFLNPTDRYWAD 240

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSL--AKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
           + +  + +             HP  +       D      E ++    V++         
Sbjct: 241 MVSLRSWEHMEEELKPYFDPGHPLLAFLGRTARDLHKKLEEGIRPEDPVADIRECFEEPE 300

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
             + L      +   D     +  +      + ++ + +   E  ++   L         
Sbjct: 301 GTTTLSRLQRSLFRMDAAAEFLERLPD-DGSLRIVSSPSVVREVETLRDFLLDRFLAQPD 359

Query: 388 ----KSALITADRNLARRVKLEL-------TRFGINIDISA--GIPLSTTLHSSILTSLL 434
                  ++  +  L       +        R G  +        P      + +L  LL
Sbjct: 360 LRLEDVVILAPETELYAGTIRAVFEATGESGRAGEPVLSVTVSDRPPFEAALADVLVGLL 419

Query: 435 NAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGN-------KNSYDI 485
                      +  L+     L +F    K  S    AL     R         ++  + 
Sbjct: 420 RLPVFPLTLSFVQRLLSFQTVLDRFSLDRKMASELLEALARAGFRWGVDKQDRTRDEPED 479

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
             L   V   +               +S           +        L  +++ ++   
Sbjct: 480 HTLDWAVSRILEGYCTGIEEQGLVFPVSPFVLPDDPQ-GEKAGILFRLLDLFRSWRDRLS 538

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
           G  ++S W +     L +  + +  +  +L+   +           +E   C+    +  
Sbjct: 539 GRHALSAWAESVSALLSDFFVLDPDRDRDLFALGQSLRELCRDIHDVEDMDCMMVTEMLS 598

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
             I        T       S  +     +  R + F  + L G+ E         +   S
Sbjct: 599 RRIFR------TTWRDRFFSGGITFGRMVPLRSIPFRIVCLLGMGE---SAFPRNDVAQS 649

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFE--MANGTRHLIYTRS--LRENNIPTIASRWLQRLLV 721
                +              H F   + +    L  +       +    + S  +++LL 
Sbjct: 650 FDFLRESPRPLDRSVREDDLHLFLEILLSARSSLWISYVGGEGGDGTTGLPSPPVRQLLE 709

Query: 722 LGGTDFFDNLKKRG 735
                F    K +G
Sbjct: 710 TLREPFPPEKKGQG 723


>gi|212702577|ref|ZP_03310705.1| hypothetical protein DESPIG_00601 [Desulfovibrio piger ATCC 29098]
 gi|212674018|gb|EEB34501.1| hypothetical protein DESPIG_00601 [Desulfovibrio piger ATCC 29098]
          Length = 1095

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 78/718 (10%), Positives = 178/718 (24%), Gaps = 68/718 (9%)

Query: 226  TKGPIIIAGSTGSIPATARLMSTVAN--HPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                 ++     +     + +S +       G  +    D       W        +   
Sbjct: 364  RLQYFLLDEFQDTSREQWQALSPLVEEALSRGGSLTWVGDVKQAIYGWRGGDAALFDGIE 423

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG--RSMVISKSFLPPDTSDMRN 341
                    P      L       R+ +     + + +     +     + +P +T D   
Sbjct: 424  -APLRRLAPDVRHETLTANWRSCRQIIAHNNALFSPLEDASVARQALAALMPQETPDDLL 482

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
                            D +            +I      + +  +  +A++   R++ R+
Sbjct: 483  DSYARRVAAGYAGTAQDFSPSSPSGGLVRVEAI-----DADNSEELNAAVLGRLRHVLRQ 537

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                   +   + +     + +   ++++   L A            L  HPL       
Sbjct: 538  ELAPRRPWQDMLVL-----VRSNAQAALVAEDLAAADIPIVTENSLLLSTHPLV------ 586

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                                    + L   + +        T V     +          
Sbjct: 587  ---------------------IQSVALLQFLCNAEDELALWTVVTGSLVQQGPLPVPDLQ 625

Query: 522  LLVDHILQCIT-PLVTYKTNKNSTCGNLSISDW--TKLTVTCLQNVCLDEHRKLPNLWFE 578
            +L D  +   + PLV +            ++ +      +T    V     R      + 
Sbjct: 626  VLHDSCVGRGSIPLVQHLQQGFPEFWTAVLAPFHNQAGLMTPYDTVMEWYDRLRVFERYP 685

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            +    L      +        A   +++       + E V    E    + I+   +S+ 
Sbjct: 686  DADVFLRCFLEVLKNAEDQGLATLPDFLAHWQEKGEEEKVPM-PEGIDAVRIMTVHKSKG 744

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFL---------SRVMQSDLNLKTAEKYIGQAAHDFE 689
            L    ++L   +  +   +                    +        +           
Sbjct: 745  LEAPVVLLPWTDASLKASDPVLMEEDGLRMVCKNGPHCGRVYYEALLRQAMELLNQFYVA 804

Query: 690  MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
                   L+  R+          S  L  L    G D    L + G   L   +      
Sbjct: 805  FTRAREELLVFRTSAATVRKGCGSDALDVLWQQAGLDVPYQL-EGGDDVLHPVQPPVAED 863

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD--PDRTD 807
            ++            +  P   S       + +      + + +L    +  +       D
Sbjct: 864  EEEDTAPAPEAAEADTVPDRLSGGRAAPSVPEEDWRPMQWLPRLKIYRNPLERMHFSARD 923

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
            RGTL H  + +L    ++++       ++  +        L    D   R        S 
Sbjct: 924  RGTLLHACLEQLPLGGLSEDN------IRAAVREVLATIPLADGQDAPDRESVTADMESC 977

Query: 868  LEHEEKIQSS--IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
            L    ++      ++  V   + +A +     L   AD I  L  G + + DYK+G  
Sbjct: 978  LLWLLRLPQFGLWQQRGVPEQSMLAADGPRREL-LRADLIVPLSWGTL-VVDYKSGRV 1033


>gi|257485680|ref|ZP_05639721.1| DNA-dependent helicase II [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331011968|gb|EGH92024.1| DNA-dependent helicase II [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 727

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 62/708 (8%), Positives = 163/708 (23%), Gaps = 163/708 (23%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           ++ R L LA        +L+ R      ++   P S LS+  +   A  +   +  ++  
Sbjct: 23  SLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  ISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRLVKRVMRELGLDEQRWPA 141

Query: 198 RLVE---LNASSPVGY----------------------------------QIALMRAEAE 220
           R  +                                                 L+RA   
Sbjct: 142 RQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDL 201

Query: 221 HLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            +++     +       +  +A   +  +V+   D       W 
Sbjct: 202 WRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++ +  SS+   +                              +       +    
Sbjct: 260 GAKIENIHQYSSDFPDTE--------------------------VIRLEQNYRSTASILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +   + N+  L  ++         + L  A NE +EA  +   +  +L    ++   A
Sbjct: 294 AANGLIVNNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIENALQTGISRNDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + +  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                               +  ++        +      +     
Sbjct: 414 NVP-----------------------ARGIGEKTVEAIREHARHADVSMWEAMRLLVANK 450

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            L+          ++ I      ++                    L +     +      
Sbjct: 451 GLTGRAATALGGFIELIENLSAKVMEMP-----------------LHLMTQTVIEQSGLI 493

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKS 625
                   E+G+       +++           + +       +             E  
Sbjct: 494 TYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHE 553

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++ ++    ++ L F  + L G+ EG++P                ++L+   +   +  
Sbjct: 554 DSIQLMTLHSAKGLEFPHVFLVGMEEGLFP--------------HKMSLEEPGRLEEERR 599

Query: 686 HDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             +       + L+ T +       +     + R +          ++
Sbjct: 600 LAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVR 647


>gi|121599679|ref|YP_992523.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei SAVP1]
 gi|121228489|gb|ABM51007.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei SAVP1]
          Length = 1354

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 83/881 (9%), Positives = 189/881 (21%), Gaps = 65/881 (7%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
              A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 270  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 322

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
             S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 323  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 382

Query: 163  EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
              +W          + +          A D     +  W   L EL+ S        L  
Sbjct: 383  RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 442

Query: 217  AEA------EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
            A A                + +       P    L+  ++   +  I            I
Sbjct: 443  ARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 502

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                  +S +               LA+       +   +  L   +          + +
Sbjct: 503  VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 561

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--- 387
                        D+              V +    +   +   +   L    D +     
Sbjct: 562  PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLAP 621

Query: 388  --------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                      A      +             I   I+   P      + +L   L    +
Sbjct: 622  SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 681

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                  +   ++             + A  A   +     +     +             
Sbjct: 682  DVGAPELVEWLR-------------ADAVAARYGIDATALETVQAWLAASGARRGLAPDA 728

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                +      R +  D    + L   +     P+ T+     +  G   +         
Sbjct: 729  AEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTD 788

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC------------------IKAN 601
             L        R L    + +      + F       +                     A 
Sbjct: 789  DLDGFARRIARDLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAG 848

Query: 602  AIEWIDIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
            A     ++   +      P         +        R L +  + L G+++GV P    
Sbjct: 849  AALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLAR 908

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             + F    + + L  +           D  +A   R LI        +   +    L   
Sbjct: 909  ADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDE 968

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            L+                     R          +      P         S + + +L+
Sbjct: 969  LLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLL 1028

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
             +     AR           ++     D    + +    L++ R+     +    +    
Sbjct: 1029 AEGARAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVD-T 1087

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
            +           +      L  + + +         +    
Sbjct: 1088 EPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASP 1128


>gi|240112479|ref|ZP_04726969.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae MS11]
 gi|268598547|ref|ZP_06132714.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae MS11]
 gi|268582678|gb|EEZ47354.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae MS11]
          Length = 1200

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 83/889 (9%), Positives = 215/889 (24%), Gaps = 103/889 (11%)

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
            A +   ++       DL+AL+  +      L  D ++  +    E              +
Sbjct: 319  AAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSRRERGFDDLLL 378

Query: 213  ALMRAEAEHLMKGTKGPII--------IAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
             +  A  ++    T    +        I     + P    +   +        +    D 
Sbjct: 379  DVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF-IARNRPLFLVGDP 437

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                  +         + ++      +   +  +    L      + RL      +    
Sbjct: 438  KQAIYSFRGADIY-AYLQAAEDARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIG 496

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS--- 381
                 +         +   +    +       ++  ++        A  IA AL  +   
Sbjct: 497  YSEVGAARAESRLSPKRPAVQLRWLHENDNEKANKDVLRRRAADYCADEIARALNEASGG 556

Query: 382  -LDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
             L+   +       A++    N A  +   L +  +   + +   +  +  ++ L++L+ 
Sbjct: 557  RLNFKGRPLQSGDIAVLVRTHNEAVMISAALKKRQVQSVLLSRESVFASPEAAALSALIG 616

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
               +      +  ++   +  +   +               +         +     LD 
Sbjct: 617  FWLEPRRAGTLRFVLTSGIFGYDAQQL----------HDFNQNESEILHWAESARTALDI 666

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                     +  +      E + L+      +      L              ++  W +
Sbjct: 667  WQKYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLR 726

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
              ++   N   D           E  + L  + +     G         +          
Sbjct: 727  DQISLAGNNGGDNRAIR-----LESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPS 781

Query: 616  E--TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            +   +     ++  L      ES    +    +      ++   T     L+  + +  +
Sbjct: 782  DWQILHQGANRAELLAKAQLSESEQKQYADEEMAERLRLLYVALTRAEEQLN--IYAAYS 839

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
              TA+  +          +    +  T +  ++ I  +  R  +R+             +
Sbjct: 840  SDTADNPLAYLIEGLPQ-DSRETVRRTYACEKDGITMLK-RNWRRVADNAPAGTDFAFTE 897

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ------LINDPYAVYA 787
                   +    D   +      P+            + S   Q          P    A
Sbjct: 898  DAPPPAAYRGNADQAAEFAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAA 957

Query: 788  RRILKLDFIPHFKKD--------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
               +                   P  T  G   H I+ +    +  +   E   L+   +
Sbjct: 958  ETSVPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDF---KFGQAAAEQETLIADKL 1014

Query: 840  DSHFEKENLPPHIDIIWRHLFH--------------------------------KISHSF 867
              +  +E   P +  +                                      K    +
Sbjct: 1015 KKYGFEEIWLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDW 1074

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYK------ 919
            L  ++     + +          ++   ++  L GF D +     G + I DYK      
Sbjct: 1075 LARDDIRLPEVCRAAAE-----TLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSA 1129

Query: 920  -TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
             T     +  A +    Q  + A A       +       ++ Y+ L+ 
Sbjct: 1130 YTRQAMDEAVAHQHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|171742279|ref|ZP_02918086.1| hypothetical protein BIFDEN_01385 [Bifidobacterium dentium ATCC
           27678]
 gi|283456614|ref|YP_003361178.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
 gi|171277893|gb|EDT45554.1| hypothetical protein BIFDEN_01385 [Bifidobacterium dentium ATCC
           27678]
 gi|283103248|gb|ADB10354.1| ATP-dependent DNA helicase, UvrD/REP family [Bifidobacterium
           dentium Bd1]
          Length = 1346

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 56/548 (10%), Positives = 154/548 (28%), Gaps = 46/548 (8%)

Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTG 237
              D L      +       N +    + IA  +            +     +++     
Sbjct: 255 RQRDLLLHLVADYNAEKRARNMAEFSDFTIAAFQLVTRFPSIGATYRKRYSHVLLDEYQD 314

Query: 238 SIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT-YSTHPQY 294
           +    A L++++   +    + V    D       W   +  +  +   +     T   +
Sbjct: 315 TSTTQAALLASLFHVDSARRSAVNAVGDPFQSIYAWRGASPGAFRMLQRDFGMSETDKPF 374

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
           +L+       +  E    L      +  R +  S        +        E  +  +  
Sbjct: 375 ALSVTRRNSRMVLEAANNLTKPLR-LPVRRLSSSLMREVDVPALSNIDTAPEGTLGVLGF 433

Query: 355 CFSDVALIEADNEREEAISIAI----ALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
                 +       + AI++      AL   + +N+   A++   +    + +  L + G
Sbjct: 434 ATFGQEIDAVVRFAKHAIALHTPSDAALAGGVKDNRPHVAVLFRSKQSMPKYEDALKQAG 493

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
           +   +     L        + +LL+ I    D  ++  L+  P    G  +     A   
Sbjct: 494 LTTLVVGQAALLERPEVQDIFALLHVICDHTDSGSLMRLLATPRFGVGAADLQALAAIAE 553

Query: 471 LELVALRGNK------------NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
               A R                  D     +      +  +    V  ++ ++      
Sbjct: 554 NVNTAHRYRALIAAGIIPGKTDEPDDSSATGAAQAKMPSETEIRAIVREYRDQVPNAVFL 613

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGN-----------LSISDWTKLTVTCL------ 561
           + ++L D + + I   ++                        + +  +  +  L      
Sbjct: 614 IDLMLRDDLSKLIDGKLSAGGAAAVLRAADMLRQVQHVYGHPLPEVVRAAIGALNLDIDM 673

Query: 562 ---QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              +++          L        +S   + + E  +    +   ++  +  L D    
Sbjct: 674 LLAEHMQHPNDTSNVTLAKSPLDAVMSLADTYMQEIAAQGTPSLRAFVSWVDSLRDASDD 733

Query: 619 KPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                 +   + ++   +S+ L +D + + G+++G +P +   +  ++   +    L   
Sbjct: 734 NATAPDTPVDVMLMTVHQSKGLEWDAVAVVGMSDGTFPSSQGDSLNVTVDEEHLNGLNNG 793

Query: 678 EKYIGQAA 685
           E    + A
Sbjct: 794 EWTPPEYA 801



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 100/994 (10%), Positives = 224/994 (22%), Gaps = 89/994 (8%)

Query: 53   TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
            T+R  + +          K   LP+ +    ++ E     L            +      
Sbjct: 379  TRRNSRMVLEA--ANNLTKPLRLPVRRLSSSLMREVDVPALSNIDTAPEGTLGVLGFATF 436

Query: 113  ARLILI------WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
             + I            L                   A      +++    D ++      
Sbjct: 437  GQEIDAVVRFAKHAIALHTPSDAALAGGVKDNRPHVAVLFRSKQSMPKYEDALKQAGLTT 496

Query: 167  EDLHALKNEKYGMWWLLAADFLKIASKY-----WTERLVELNASSPVGYQIALMRAEAEH 221
              +      +           L +   +         L             AL       
Sbjct: 497  LVVGQAALLE-RPEVQDIFALLHVICDHTDSGSLMRLLATPRFGVGAADLQALAAIAENV 555

Query: 222  LMKGTKGPIIIAGST-------GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW--N 272
                    +I AG             AT    + + +      ++      +P A++  +
Sbjct: 556  NTAHRYRALIAAGIIPGKTDEPDDSSATGAAQAKMPSETEIRAIVREYRDQVPNAVFLID 615

Query: 273  TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             +     +        +      L        ++      L  V     G   +     L
Sbjct: 616  LMLRDDLSKLIDGKLSAGGAAAVLRAADMLRQVQHVYGHPLPEVVRAAIGALNLDIDMLL 675

Query: 333  PPDTSDMRNTDILENKIPNIQKCF-------SDVALIEADNEREEAISIAIALRMSLDEN 385
                    +T  +      +            ++A     + R     +  +LR + D+N
Sbjct: 676  AEHMQHPNDTSNVTLAKSPLDAVMSLADTYMQEIAAQGTPSLRAFVSWV-DSLRDASDDN 734

Query: 386  ------KKKSALITADRN--LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                       L+T  ++  L       +         S G  L+ T        L    
Sbjct: 735  ATAPDTPVDVMLMTVHQSKGLEWDAVAVVGMSDGTFPSSQGDSLNVT---VDEEHLNGLN 791

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                     A   K     +      +         +  R   ++    D    +     
Sbjct: 792  NGEWTPPEYAETAKT----WLQNPAAVPVPVRVDAGILPRFPHDALVGGDPIEALASLDD 847

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
             +  +  V      L  +D E       ++ Q          ++             ++ 
Sbjct: 848  AETIDDEVFGTLRSLQIDDMEGMDPTGLYLTQSEEYGRRLHADERRLAYVALTRARHEVL 907

Query: 558  VTCLQN--VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
            +T   +     D                  S     +     +        D        
Sbjct: 908  LTFSVHSEESRDSRLVEGKKQGVRGPSNFWSEVRDSMNGIVSVAREPGNLADSAVAADMI 967

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
            + V+      + L     +     +++  ++G            +         SD    
Sbjct: 968  DGVETLASIGAPLPDGYFVGEHARDYEDAVVGDAWNAPLEPAAEQRNLPWPCGLSDRLAT 1027

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            T      Q     +  +G           ++    +    L R  +L G +    +   G
Sbjct: 1028 TFAASADQVRSAMQALSGAYDGHDGDQSADDMTMPVDESLLLRARLLVGDEHL--MPDTG 1085

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                D+   +    ++      +    L+A+          +               L  
Sbjct: 1086 DSATDFDAAVRVRGERILAGGRQNVTSLQARAGVMDDRSSSEYWR-----------GLVR 1134

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---------PEINHLMKQIIDSHFEKE 846
                   P     GT  H      +      +            IN L +        ++
Sbjct: 1135 PIPRVASPSAQ-LGTRLHAWAERFVMADAESDAGVGNAVSRADLINGLAQDEAKIVRIEQ 1193

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
            +         R    K+        + + +     +      + +  +G  + G  D + 
Sbjct: 1194 SGESGNASQER----KLLDWRHRLVQSVWAERNPAWAERQLVVDVPQLGTIVNGKLDAVF 1249

Query: 907  L------LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
                    +S    I D+KTG  P+K         QL +    L   +   +    +   
Sbjct: 1250 FGGIDPNDQSKTYTIVDWKTGHRPRKRNEIDEKLAQLDMYRILL--SAMEGVPLDSIDAC 1307

Query: 961  FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
             Y         +    D++  + D+  ++ L  L
Sbjct: 1308 LYY------LSEPKEGDRELKALDKTEQEILAEL 1335


>gi|240080267|ref|ZP_04724810.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA19]
 gi|240123060|ref|ZP_04736016.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID332]
 gi|268596417|ref|ZP_06130584.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae FA19]
 gi|268681687|ref|ZP_06148549.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID332]
 gi|268550205|gb|EEZ45224.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae FA19]
 gi|268621971|gb|EEZ54371.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID332]
          Length = 1200

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 94/931 (10%), Positives = 220/931 (23%), Gaps = 113/931 (12%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
            +L  L      +L  +  D             A      + LAD         +    L 
Sbjct: 287  QLPCLDKDTHERLLKLSSDKLEAGLKKGKTPDAAVFAELQKLADF-------GRDLNALE 339

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKG 225
              +        L   ++L  +     +   E      +      +            +  
Sbjct: 340  EAEETTMIRLQLDLIEYLNSSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETPARAVAE 399

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
                 +I     + P    +   +        +    D       +      +    + +
Sbjct: 400  NWEIALIDEFQDTDPLQYEIFQKIF-IARNRPLFLVGDPKQAIYSFRGADIYAYLQAAED 458

Query: 286  TTYSTHPQ---YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
              +         S A L+  +       +R   + N  Y                     
Sbjct: 459  ARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQL 518

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS----LDENKKK-----SALIT 393
              L     + +K   DV    A +    A  IA AL  +    L+   +       A++ 
Sbjct: 519  RWL--HENDNEKANKDVLRRRAADYC--ADEIAHALNEASGGRLNFKGRPLQSGDIAVLV 574

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
               N A  +   L +  +   + +   +  +  ++ L++L+    +      +  ++   
Sbjct: 575  RTHNEAVMISAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSG 634

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            +  +   +               +         +     LD          +  +     
Sbjct: 635  IFGYDAQQL----------HDFNQNESEILHWAESARTALDIWQKYGIFAAMQQFSQTHG 684

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
             E + L+      +      L              ++  W +  ++   N   D      
Sbjct: 685  IETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNGGDNRAIR- 743

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--TVKPKIEKSSTLFIL 631
                 E  + L  + +     G         +          +   +     ++  L   
Sbjct: 744  ----LESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAELLAKA 799

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ES    +    +      ++   T     L+  + +  +  TA+  +          
Sbjct: 800  QLSESEQKQYADEEMAERLRLLYVALTRAEEQLN--IYAAYSSDTADNPLAYLIEGLPQ- 856

Query: 692  NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            +    +  T +  ++ I  +  R  +R+             +       +    D   + 
Sbjct: 857  DSRETVRRTYACEKDGITMLK-RNWRRVADNAPAGTDFAFTEDAPPPAAYRGNADQAAEF 915

Query: 752  PHYKRPKPFPPLEAQPRTYSFSEIKQ------LINDPYAVYARRILKLDFIPHFKKD--- 802
                 P+            + S   Q          P    A   +              
Sbjct: 916  AANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPSETPTASDGI 975

Query: 803  -----PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                 P  T  G   H I+ +    +  +   E   L+   +  +  +E   P +  +  
Sbjct: 976  SIHDFPKGTQAGLCLHEILEDF---KFGQAAAEQETLIADKLKKYGFEEIWLPAVAEMAE 1032

Query: 858  HLFH--------------------------------KISHSFLEHEEKIQSSIEKIFVNI 885
                                                K    +L  ++     + +     
Sbjct: 1033 ACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRLPEVCRAAAE- 1091

Query: 886  PAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYK-------TGDNPKKETAQKLIDPQ 936
                 I+   ++  L GF D +     G + I DYK       T     +  A +    Q
Sbjct: 1092 ----TIDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQHYYLQ 1147

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
              + A A       +       ++ Y+ L+ 
Sbjct: 1148 ALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|283456615|ref|YP_003361179.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
 gi|283103249|gb|ADB10355.1| ATP-dependent DNA helicase, UvrD/REP family [Bifidobacterium
           dentium Bd1]
          Length = 1353

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/727 (8%), Positives = 173/727 (23%), Gaps = 59/727 (8%)

Query: 58  QELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL 117
           + +R        +  T LP +                    L   ++  ++ + + R++ 
Sbjct: 56  RVIRELSAISQARPVTTLPAV-----AFRIVTAVRSRAGLPLPKLLNGAEQDMIIRRVLA 110

Query: 118 IWRN--------KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
              +         + D+++  +  +  S  +   +    A  L D++  +     K E  
Sbjct: 111 SHVDHTNRGDECAVCDLLRTYFAVADWSGMVVDDSTDAFANQLRDMLARMNEIGAKPELE 170

Query: 170 HALK-------------NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             L              +E+    W LA        +                  +    
Sbjct: 171 DGLIARAASKDGTLNERHERMRTQWRLAFALRAEYDEAIRAAYPGEYRLDASQLMVDAAA 230

Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC-------HIPTA 269
              +  ++     +I+     +  A   +++ +       +++   D          P  
Sbjct: 231 TVTQAEIEDLPKLLIVDDFQDATLAGFDMLAALRGRGVRLLLVGNPDESVQTFRGSYPEY 290

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
           ++N    +            T  +    + L    +                    + + 
Sbjct: 291 LFNAAQSRLGARLERIDVTETEQRKPAYRTLAASRVSLSIASTEPTDEALPSRPGKMPAL 350

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
               P  +      +      +     +        +  EE   +   ++    ++ +  
Sbjct: 351 PGSLPIETVPTGVSVDGISPDDGSIGTAMYR-----SAVEELDDVVWRIKTEHLQHSRDW 405

Query: 390 ---ALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMA 445
              A+I  D +  R     L   G+ +  S+   PL        L +L+           
Sbjct: 406 NDMAVIAHDNDTVRTFGERLRADGVPVRYSSVTRPLKDEPFVQGLFALIELAG------- 458

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              L K  +A      +       +   + +     +            R+AT ++  + 
Sbjct: 459 ---LKKQTIAASKMGLRTAGAYIRSRVALIMNSPLITVGGDAQHEGRPTRLATVESAMNA 515

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
               + + E D    +   D        L+                         L  + 
Sbjct: 516 LGSLAAVLESDDSGELDDSDRADVAKQALLPRLIADWKDYVVDL------RNSRQLTRMS 569

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                  P +  ++   +   L S  +   S +         ++        +       
Sbjct: 570 DSADSATPTIAVDDSLMSEERLDSADLVDPSDLPFGVDALYVLLLEGNTDRVLDAIASVL 629

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
                     S     D  I               +   +   ++ +  + + +      
Sbjct: 630 GADPQSKAFASLWKVLDKTIEAERKLISREPQYVLDCAWTACDKARIWQRVSLENSAAGR 689

Query: 686 HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
              +  +    L ++ +  + +   +A+  +   +        +         +D    L
Sbjct: 690 AANDRLDAAMRL-FSYASGDESGGVLAAHTIGAFIEQVRALTIEADSLAHTAPIDQAVTL 748

Query: 746 DYTTKQP 752
                  
Sbjct: 749 TTPAGAA 755



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 9/72 (12%)

Query: 894  IGIHLTGFADRIDLL----KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
            + I L+G  DR++          V + DYKTG     +      D QL+     L   +F
Sbjct: 1143 LTIRLSGRIDRLERRVLSGGGEQVRLIDYKTGKQLSGQDMFS--DLQLACYQLGL---AF 1197

Query: 950  SQIDCRKVANLF 961
             +   R    + 
Sbjct: 1198 PEEGPRGAQAIA 1209


>gi|171742278|ref|ZP_02918085.1| hypothetical protein BIFDEN_01384 [Bifidobacterium dentium ATCC
           27678]
 gi|171277892|gb|EDT45553.1| hypothetical protein BIFDEN_01384 [Bifidobacterium dentium ATCC
           27678]
          Length = 1354

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/727 (8%), Positives = 173/727 (23%), Gaps = 59/727 (8%)

Query: 58  QELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL 117
           + +R        +  T LP +                    L   ++  ++ + + R++ 
Sbjct: 57  RVIRELSAISQARPVTTLPAV-----AFRIVTAVRSRAGLPLPKLLNGAEQDMIIRRVLA 111

Query: 118 IWRN--------KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
              +         + D+++  +  +  S  +   +    A  L D++  +     K E  
Sbjct: 112 SHVDHTNRGDECAVCDLLRTYFAVADWSGMVVDDSTDAFANQLRDMLARMNEIGAKPELE 171

Query: 170 HALK-------------NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             L              +E+    W LA        +                  +    
Sbjct: 172 DGLIARAASKDGTLNERHERMRTQWRLAFALRAEYDEAIRAAYPGEYRLDASQLMVDAAA 231

Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC-------HIPTA 269
              +  ++     +I+     +  A   +++ +       +++   D          P  
Sbjct: 232 TVTQAEIEDLPKLLIVDDFQDATLAGFDMLAALRGRGVRLLLVGNPDESVQTFRGSYPEY 291

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
           ++N    +            T  +    + L    +                    + + 
Sbjct: 292 LFNAAQSRLGARLERIDVTETEQRKPAYRTLAASRVSLSIASTEPTDEALPSRPGKMPAL 351

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
               P  +      +      +     +        +  EE   +   ++    ++ +  
Sbjct: 352 PGSLPIETVPTGVSVDGISPDDGSIGTAMYR-----SAVEELDDVVWRIKTEHLQHSRDW 406

Query: 390 ---ALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMA 445
              A+I  D +  R     L   G+ +  S+   PL        L +L+           
Sbjct: 407 NDMAVIAHDNDTVRTFGERLRADGVPVRYSSVTRPLKDEPFVQGLFALIELAG------- 459

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              L K  +A      +       +   + +     +            R+AT ++  + 
Sbjct: 460 ---LKKQTIAASKMGLRTAGAYIRSRVALIMNSPLITVGGDAQHEGRPTRLATVESAMNA 516

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
               + + E D    +   D        L+                         L  + 
Sbjct: 517 LGSLAAVLESDDSGELDDSDRADVAKQALLPRLIADWKDYVVDL------RNSRQLTRMS 570

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                  P +  ++   +   L S  +   S +         ++        +       
Sbjct: 571 DSADSATPTIAVDDSLMSEERLDSADLVDPSDLPFGVDALYVLLLEGNTDRVLDAIASVL 630

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
                     S     D  I               +   +   ++ +  + + +      
Sbjct: 631 GADPQSKAFASLWKVLDKTIEAERKLISREPQYVLDCAWTACDKARIWQRVSLENSAAGR 690

Query: 686 HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
              +  +    L ++ +  + +   +A+  +   +        +         +D    L
Sbjct: 691 AANDRLDAAMRL-FSYASGDESGGVLAAHTIGAFIEQVRALTIEADSLAHTAPIDQAVTL 749

Query: 746 DYTTKQP 752
                  
Sbjct: 750 TTPAGAA 756



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 9/72 (12%)

Query: 894  IGIHLTGFADRIDLL----KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
            + I L+G  DR++          V + DYKTG     +      D QL+     L   +F
Sbjct: 1144 LTIRLSGRIDRLERRVLSGGGEQVRLIDYKTGKQLSGQDMFS--DLQLACYQLGL---AF 1198

Query: 950  SQIDCRKVANLF 961
             +   R    + 
Sbjct: 1199 PEEGPRGAQAIA 1210


>gi|319763161|ref|YP_004127098.1| uvrd/rep helicase [Alicycliphilus denitrificans BC]
 gi|317117722|gb|ADV00211.1| UvrD/REP helicase [Alicycliphilus denitrificans BC]
          Length = 1095

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 85/895 (9%), Positives = 208/895 (23%), Gaps = 113/895 (12%)

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                         L P  +     L  A     W+  L  +       +P +   S   A
Sbjct: 254  RAMLEDAARALMPLAPSFAAKGEELMAALQAGDWQGVLAALFTKDGEGTPRAFGKSCPQA 313

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
            + +A++ A  +     +   W            +     A   +   + +     E    
Sbjct: 314  VTVAQDEAQTLRDACRQHAAW------------LHQQRMARLSRRLIECFGAVKREHGWV 361

Query: 206  SPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
                 +   +            +  +      +++     + P   + +        GA 
Sbjct: 362  DMNDVERTALTLLSDPVLSGWVQERLDARVRHLLVDEFQDTNPLQWQALHAWLAGYAGAG 421

Query: 258  -------VLPGLDCHIPTAIWNTITE--KSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
                   V    D       +                               +   +   
Sbjct: 422  GGQHPPSVFIVGDPKQSIYRFRRAEPQVFKAAQAFVREALGGDLLACDHTRRNAQGVIGV 481

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-----VALIE 363
                +     +          +        +R   I            +D      +L E
Sbjct: 482  VNAAMQAAQAQQEYEGFRAHTTESQDAGRLLRLPPIARTDARVGGGGAADPLAWRDSLNE 541

Query: 364  ADNEREEAISIAIALRMSLDE--------NKKKSALITADRNLARRVKLELTRFGINIDI 415
              +E EE + +A + + +              +  ++   R    R++  L    I    
Sbjct: 542  PRHEAEETLRMAESAQAAQWVAAQLAAGLPASEIMVLARQRERLARMEEALRALHIPCVQ 601

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                 L+       L +LL+A+      +++A ++K PL                 E   
Sbjct: 602  PEKADLAQAPEVQDLVALLDALVSPAHDLSLARVLKSPLFGADDALLTELALLRRQERHV 661

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                 +     +L +L    IA      ++  ++  +       A+  +      +    
Sbjct: 662  HLSWFDLLQKQELLALDCRAIAA-----NLSLYKEWVDSLPPHDALQAIYAHGDVLARFA 716

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                         ++       +       L  +  +  L        +++      +  
Sbjct: 717  ASAPAPQRAGVLANLRALLGAALQQDGGRYLTPYAFVRALRKG----GIAAPARADAQAV 772

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              +  +  + ++  + L+     +PK  ++  + +    E  L       +   +E   P
Sbjct: 773  RLLTVHGAKGLEAHSVLLLDTDARPKSAETMAVLVDWPGEEPLPRR---FIFLASESSPP 829

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
             +        R  +    L T             +    R L  +     +  P      
Sbjct: 830  PSAEGAMAAERAERQREALNT---------LYVAVTRAKRCLALSCVQSGSANPG----- 875

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
                                  +      L      P           +          +
Sbjct: 876  ---------------------SWWARLAPLMQQDADPQAGAMGAQDAGDGAFTLLELPRL 914

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
                       A   L +       +D   + +G   H ++ ++    +           
Sbjct: 915  ----------PAAPGLPVAAPRQPAQDSLASRQGQAMHALLEQVGVAGLPLAEARARGWG 964

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
            ++ +     +  LP         +   I +         ++ +E      P     + + 
Sbjct: 965  QERLAQLAREFALPLPAARAAARMAQAILNGAGAWAW-DEAQLELAVNEAPLTHQGQGL- 1022

Query: 896  IHLTGFADRI----DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
                   DR+    +        + DYK+   P     Q  +  QL     A++A
Sbjct: 1023 -----RLDRLVCLRERRGGARWWVLDYKSAAQP---ERQGDLVAQLQRYREAVRA 1069


>gi|7329749|emb|CAB82770.1| DNA helicase II [Prochlorococcus marinus str. PAC2]
          Length = 624

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/457 (10%), Positives = 114/457 (24%), Gaps = 83/457 (18%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTIL--------------PIIK--------- 79
             +S+     T +A +E++     +  K+  I+                I+         
Sbjct: 55  DPSSILAVTFTNKAAREMKDRLELLLAKRLAIITHEKPWSALEVAEQRQIRNRIYREISR 114

Query: 80  -----SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
                +   +       D+    +  P      R   +             + +DL  + 
Sbjct: 115 ELWIGTFHALFARLLRFDIDKFKD--PEGLTWTRQFSIYDETDAQSLIKEIVTQDLQLDP 172

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
               P     AI  AK           +    +DL                  +    + 
Sbjct: 173 KRFEPKKVRWAISNAK----------NQCLLPDDLSK------SQEGQR-GRLVAETYRL 215

Query: 195 WTERLVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
           + + L   NA           Q+                 +++     +      L+  +
Sbjct: 216 YRKALAANNALDFDDLLLIPVQLLQQNENIRTYWHNRFKHVLVDEYQDTNWTQYELIKQL 275

Query: 250 A---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                        N   V    D       +     +       +    +          
Sbjct: 276 VTNGKDPSSFKDWNNRSVFVVGDADQSIYSFRAADFRILMGFQEDFGKKS---------- 325

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                         +   ++       S      ++    N + ++  +   +     + 
Sbjct: 326 --------QDNTNDSTLVKLEENYRSTSTILEAANSLISNNKERIDKVLRATRGEGEPIK 377

Query: 361 LIEADNEREEAISIAIALR----MSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
           L   D+E  EA ++   LR     + + N    A++      +R ++  L R+ I   + 
Sbjct: 378 LTRCDDEIAEAEAVIHRLRILDASNPELNWGDMAILYRTNAQSRAIEDSLVRWSIPYIVV 437

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
            G+          L + L  +   +D +++  ++  P
Sbjct: 438 GGLRFYDRREIKDLLAYLRLLINPSDSVSLLRVLNVP 474


>gi|240115219|ref|ZP_04729281.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID18]
 gi|260440963|ref|ZP_05794779.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae DGI2]
 gi|268600900|ref|ZP_06135067.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID18]
 gi|291044290|ref|ZP_06569999.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae DGI2]
 gi|268585031|gb|EEZ49707.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID18]
 gi|291011184|gb|EFE03180.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae DGI2]
          Length = 1200

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 91/892 (10%), Positives = 218/892 (24%), Gaps = 109/892 (12%)

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
            A +   ++       DL+AL+  +      L  D ++  +    E              +
Sbjct: 319  AAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSRRERGFDDLLL 378

Query: 213  ALMRAEAEHLMKGTKGPII--------IAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
             +  A  ++    T    +        I     + P    +   +        +    D 
Sbjct: 379  DVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF-IARNRPLFLVGDP 437

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQ---YSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                  +      +    + +  +         S A L+  +       +R   + N  Y
Sbjct: 438  KQAIYSFRGADIYAYLQAAEDARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGY 497

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
                                   L     + +K   DV    A +    A  IA AL  +
Sbjct: 498  SEVGAARAESRLSPKRPAVQLRWL--HENDNEKANKDVLRRRAADYC--ADEIARALNEA 553

Query: 382  ----LDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                L+   +       A++    N A  +   L +  +   + +   +  +  ++ L++
Sbjct: 554  SGGRLNFKGRPLQSGDIAVLVRTHNEAVMISAALKKRQVQSVLLSRESVFASPEAAALSA 613

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            L+    +      +  ++   +  +   +               +         +     
Sbjct: 614  LIGFWLEPRRAGTLRFVLTSGIFGYDAQQL----------HDFNQNESEILHWAESARTA 663

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            LD          +  +      E + L+      +      L              ++  
Sbjct: 664  LDIWQKYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHK 723

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
            W +  ++   N   D           E  + L  + +     G         +       
Sbjct: 724  WLRDQISLAGNNGGDNRAIR-----LESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDT 778

Query: 613  IDGE--TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
               +   +     ++  L      ES    +    +      ++   T     L+  + +
Sbjct: 779  GPSDWQILHQGANRAELLAKAQLSESEQKQYADEEMAERLRLLYVALTRAEEQLN--IYA 836

Query: 671  DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
              +  TA+  +          +    +  T +  ++ I  +  R  +R+           
Sbjct: 837  AYSSDTADNPLAYLIEGLPQ-DSRETVRRTYACEKDGITMLK-RNWRRVADNAPAGTDFA 894

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ------LINDPYA 784
              +       +    D   +      P+            + S   Q          P  
Sbjct: 895  FTEDAPPPAAYRGNADQAAEFAANSIPERGFRFVRHTSFTALSRQTQTPDGGEEDACPSL 954

Query: 785  VYARRILKLDFIPHFKKD--------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
              A   +                   P  T  G   H I+ +    +  +   E   L+ 
Sbjct: 955  DAAETSVPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDF---KFGQAAAEQETLIA 1011

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFH--------------------------------KIS 864
              +  +  +E   P +  +                                      K  
Sbjct: 1012 DKLKKYGFEEIWLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRL 1071

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYK--- 919
              +L  ++     + +          ++   ++  L GF D +     G + I DYK   
Sbjct: 1072 RDWLARDDIRLPEVCRAAAE-----TLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNH 1126

Query: 920  ----TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
                T     +  A +    Q  + A A       +       ++ Y+ L+ 
Sbjct: 1127 LSAYTRQAMDEAVAHQHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|239500826|ref|ZP_04660136.1| ATP-dependent DNA helicase pcrA [Acinetobacter baumannii AB900]
          Length = 649

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 65/572 (11%), Positives = 144/572 (25%), Gaps = 63/572 (11%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    Y     L    + I   T+RA  E+ +   +  G ++  L    +       
Sbjct: 27  KTIVARAAYLIDQGLPANQIQILTFTRRAASEIVARVEQHVGAQAKGL-RASTFHTFCMY 85

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +          + +    L + RL+     K  D +     E       +      
Sbjct: 86  LLRRNPQAFGLTQFSIIDRDDQLLMFRLLRG---KDKDNVLPKAAELCDLYSYARNTQSK 142

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
           L++ L   +      +     +  L       +     +            L   +  S 
Sbjct: 143 LSEALLKQLPEAYEYK---SQIAEL----MKTYEQRKRE---------RNFLDYDDILSI 186

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
           V   +    A    +  G    +++     + P    L+  +        +    D    
Sbjct: 187 VAVHLQNSEALTNWV-AGFCQALLVDEMQDTNPLQWALLQPLIGKVK---LFCVGDDAQS 242

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +     ++ +                  ++  LD+     + + ++SN +   S + 
Sbjct: 243 IYGFRGADFENIHSFKERIPD---------AVIHTLDLNYRSTQEILDLSNWLLSHSPID 293

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
            +  L       +                    L    NE EEA  IA  L     +   
Sbjct: 294 YQKQLQAHRGKGQKPQ-----------------LHLFGNEFEEANWIAQDLIERHQQGAN 336

Query: 388 KS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                ++      AR ++       I      G+ L  + H   + SLL  +    D +A
Sbjct: 337 WYDHMVLVRSGYSARYLEGAFIAAEIPYRFIGGVKLLESAHVKDVLSLLRIVSNPQDDLA 396

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
               +       G  +   S+    L  ++    +        K  +            +
Sbjct: 397 WMRFLT---LWDGIGDVGASKLAQELMSISEVEERCQRLERHGKVPLQ--------AILI 445

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                 L +  +    L +D + + +      K           +    +   +  + + 
Sbjct: 446 LKQLDVLQQHVEASIGLALDALSEQLEQNYKTKDWSRRARDFDLVKQLARKHASLGEFLE 505

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                 +     E+ G         I      
Sbjct: 506 EYVLEPISISEIEKAGDDDLVTLITIHSAKGA 537


>gi|315656421|ref|ZP_07909310.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492980|gb|EFU82582.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 877

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 90/700 (12%), Positives = 185/700 (26%), Gaps = 111/700 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T +A  E+R     + G  +  +  + +          A+             
Sbjct: 111 EVLAITFTNKAAAEMRQRVESLVGNAAKYM-WVSTFHSACVRILRAEADTL--------G 161

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           + R   +          L + I       P   P          K+ A  I   + E   
Sbjct: 162 VTRSFSIYD--TADTKALLNRIIKGRGLDPKRFPP---------KSFAAKISQAKNELIT 210

Query: 166 WEDLH-ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA---LMRAEAEH 221
            E        +K                  + + L   NA        +   L +A  + 
Sbjct: 211 PEVFALGAGVDKMS-------QLTAEIYTEYQQLLRRANAFDFDDLIASTVYLWKAHPDI 263

Query: 222 LMKGTKG--PIIIAGSTGSIPATARLMS-----TVANHPNGAIVLPGLDCHIPTAIWNTI 274
           L +       +++     + PA   L+         +    A +    D       +   
Sbjct: 264 LARYRAKFLHVLVDEYQDTNPAQYELIRLLTVGAAGDAQPPAELTVVGDSDQSIYAFRGA 323

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
           T ++     S+   +T                             +Y      S   +  
Sbjct: 324 TIRNIEEFESDFPGAT----------------------------TVYLEQNYRSTGTILS 355

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVA--LIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             + + + +    K          V   L  AD +R+EA  I   L+    E  +  + A
Sbjct: 356 VANAIISENEGRRKKNLWTDAGQGVQAVLYAADTDRDEAAFIVRELQKLRQEGSSWDEFA 415

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           +       +R ++  LTR GI   +  G             + L A   L D   +  ++
Sbjct: 416 VFYRTNAQSRSLEEMLTREGIPYRVVGGTKFYDRREIKDAIAYLCAAANLADDGNLLRVL 475

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P    G       R  +  E +             L+  +         +      ++
Sbjct: 476 NEPKRGLGDKAVQTIREVSLRENLDF--------GQALRQFL-----PGGTHHGDLSAKA 522

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                +    +  +  +     PL           G L                      
Sbjct: 523 SAGIAEFVGVLDAMRALDAASAPLDEILDTALEDSGYLP------KLRKSNDPQDDARVE 576

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
            L  L    +  +LS   +++ +      + A+A +  D   +                +
Sbjct: 577 NLAELRNVAQDFSLSEPDARLADFLERISLVADADQLPDTAAQPERPADPAHPAAPPE-V 635

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            ++    ++ L F+T+ + G+ +G++P + +              L+  +    +    +
Sbjct: 636 TLMTVHTAKGLEFNTVFVTGMEDGLFPHSRS--------------LENPQDIAEERRLAY 681

Query: 689 EMANGTR-HLIYTR-SLRENNIPTI---ASRWLQRLLVLG 723
                 R  L  TR + R     T+   ASR+L  +    
Sbjct: 682 VAVTRARQRLYLTRCAARTVFGETVTMPASRFLDDIPAEL 721


>gi|260771453|ref|ZP_05880378.1| exodeoxyribonuclease V beta chain [Vibrio furnissii CIP 102972]
 gi|260613579|gb|EEX38773.1| exodeoxyribonuclease V beta chain [Vibrio furnissii CIP 102972]
          Length = 1214

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 104/924 (11%), Positives = 230/924 (24%), Gaps = 116/924 (12%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY--WTERLVELNASSPVGYQ 211
             + + ++    +   L A                 K + ++  + + L +L+AS     +
Sbjct: 311  AVFEAVQAFLAEPVSLEAPLLAHAITHCRTLLAKAKASKQWLSFDDLLTQLSASLDGDDE 370

Query: 212  IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
              L         +      +I     + P    + S +        +    D       +
Sbjct: 371  GTLAARI-----RTLYPVAMIDEFQDTDPLQYSIFSRIYLPHPQCGLFMIGDPKQAIYGF 425

Query: 272  NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN---------------V 316
                  +     +  +   +   +  +    +      V  L +                
Sbjct: 426  RGADIFTYIKARNQVSAH-YTLGTNWRSSADMVAAVNQVFTLPDSPFIYDNDIPFLPVSA 484

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ----KCFSDVALIEADNEREEAI 372
            S +  GR+ +++    P  T      D    K   +        S +  I    ++ +A 
Sbjct: 485  SPKAGGRAWLLNGEVQPALTYWSMAADAPVTKGAYLDTMAAATASQIQTILTAAQQGKAQ 544

Query: 373  S-------IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTT 424
                     + +++          A++    N  R +K  L + GI  + +S    + T+
Sbjct: 545  FRHGGAIQASDSIQAGDSIQAGDIAVLVRTGNEGRLIKEALAQQGIASVYLSNRDSVFTS 604

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
              +  +  LL A+   ++  A+   +  PL      +             AL   K    
Sbjct: 605  TIAPDMQRLLQAVLTPDNDRAMRAALASPLFALNAQQLDALNNDENEWENALNEFKQYRQ 664

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
            +   + ++    A          W      E           +   +      +      
Sbjct: 665  LWLDRGVLPMLRAVLSLRHIAERWLEEPDGE---------RQLTDFMHLSELLQQATQEI 715

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
              +  +  W   ++   +         +  L  E     +       I     ++   + 
Sbjct: 716  DSDHGLLRWLAQSIADAEQGLGGSDEAIQRLESERNLVQIV-----TIHKSKGLEYELVF 770

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG-GLNEGVWPKNTAKNPF 663
               +++     E          TL  +   E+ +   D   L   L         A    
Sbjct: 771  LPFVLSYREASEGKYYDASSGQTLLDISGQEASIQQADKERLAEDLRLIYVALTRAVYGC 830

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
               V        + E      +    +    +           +  T  +          
Sbjct: 831  FIGVAPLRNGRSSKEPTGVHHSALGYLLQNAQQGGLALLAESLHQHTALACVAVTEPPAV 890

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                F  L +         R L +   +            +   +  +  EI     D  
Sbjct: 891  PESVFVPLAEPLPPLS--ARSLSHEIDRLWRITSYSGLVKQGSHQHDASFEIGGFDVDSA 948

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
              +    L       F         GT  H++  E+   +   +                
Sbjct: 949  DEHDEAALAEPERSIFTFPRGAQP-GTFLHSLFEEVEFTQPASDEHNT---------RII 998

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEE------KIQSSIEKIFVNIPAKMAIE----- 892
                    ID  W  +   +  + L            Q +  +    +   + IE     
Sbjct: 999  ADLMEREQIDAEWLPVLQLLVDTVLRTPLNGKDLCLNQKAPHQRLTEMEFLLPIEVLSAP 1058

Query: 893  -----------------SIGI-----HLTGFADRIDLLKSGFVDITDYKT---------- 920
                              +G       L GF D +   + G   + D+K+          
Sbjct: 1059 ALNRVVQRHDPLSAKAGDLGFYTVQGMLKGFIDLVFEHQ-GKYYVLDWKSNHLGDEVAAY 1117

Query: 921  -GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCIT 975
             G+   +  A+   D Q  L A AL     S++      +    ++Y+ L+         
Sbjct: 1118 QGERLAQAMAEHRYDLQYQLYALALHRFLRSRLAGYDYQQHFGGVYYLFLRGMDGSSQHG 1177

Query: 976  NDKKKYSADELSEKSLKNLIEIVT 999
                K S     +  L+ L E++ 
Sbjct: 1178 IFSAKPS-----QAMLEELDELIQ 1196


>gi|86741325|ref|YP_481725.1| RecB family exonuclease [Frankia sp. CcI3]
 gi|86568187|gb|ABD11996.1| putative RecB family exonuclease [Frankia sp. CcI3]
          Length = 303

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 78/258 (30%), Gaps = 20/258 (7%)

Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
           T + P                + S S     +N P     R + +L          +   
Sbjct: 4   TQRSPAIPGSVASAAPRPLIGSLSPSRAADFVNCPLRYRFRVVDRLPEP-----PSEAAT 58

Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID---IIWRHLFHKIS 864
           RGT+ H ++ +L     ++ T +    + +                         + + +
Sbjct: 59  RGTVVHAVLEKLFDLPASRRTLQAARELVEPAWDTVRAREPAVEALFGGRDELAAWLESA 118

Query: 865 HSFLE--HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL--LKSG-FVDITDYK 919
              L      +  S +  +   +  +  ++S G+ L G+ DR+D      G  + + DYK
Sbjct: 119 RELLAGYFALEDPSRLAPVARELYVEHVLDS-GLRLRGYLDRLDEATTAQGPALRVVDYK 177

Query: 920 TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
           TG +P     +     Q+   A  L       I       L    L  +  +    ++  
Sbjct: 178 TGRSPGPAF-ESSAMFQMKFYALLLWR-----IRGVIPRELRLYYLGDRTWLRATPDEAD 231

Query: 980 KYSADELSEKSLKNLIEI 997
             +A+   E     +   
Sbjct: 232 LRAAERRIEALWAAIDRA 249


>gi|330825224|ref|YP_004388527.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
 gi|329310596|gb|AEB85011.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
          Length = 1095

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 85/895 (9%), Positives = 208/895 (23%), Gaps = 113/895 (12%)

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                         L P  +     L  A     W+  L  +       +P +   S   A
Sbjct: 254  RAMLEDAARALMPLAPSFAAKGEELMAALQAGDWQGVLAALFTKDGEGTPRAFGKSCPQA 313

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
            + +A++ A  +     +   W            +     A   +   + +     E    
Sbjct: 314  VTVAQDEAQTLRDACRQHAAW------------LHQQRMARLSRRLIECFGAVKREHGWV 361

Query: 206  SPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
                 +   +            +  +      +++     + P   + +        GA 
Sbjct: 362  DMNDVERTALTLLSDPVLSGWVQERLDARVRHLLVDEFQDTNPLQWQALHAWLAGYAGAG 421

Query: 258  -------VLPGLDCHIPTAIWNTITE--KSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
                   V    D       +                               +   +   
Sbjct: 422  GGQHPPSVFIVGDPKQSIYRFRRAEPQVFKAAQAFVREALGGDLLACDHTRRNAQGVIGV 481

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-----VALIE 363
                +     +          +        +R   I            +D      +L E
Sbjct: 482  VNAAMQAAQAQQEYEGFRAHTTESQDAGRLLRLPPIARTDARVGGGGAADPLAWRDSLNE 541

Query: 364  ADNEREEAISIAIALRMSLDE--------NKKKSALITADRNLARRVKLELTRFGINIDI 415
              +E EE + +A + + +              +  ++   R    R++  L    I    
Sbjct: 542  PRHEAEETLRMAESAQAAQWVAAQLAAGLPASEIMVLARQRERLARMEEALRALHIPCVQ 601

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                 L+       L +LL+A+      +++A ++K PL                 E   
Sbjct: 602  PEKADLAQAPEVQDLVALLDALVSPAHDLSLARVLKSPLFGADDALLTELALLRRQERHV 661

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                 +     +L +L    IA      ++  ++  +       A+  +      +    
Sbjct: 662  HLSWFDLLQKQELLALDCRAIAA-----NLSLYKEWVDSLPPHDALQAIYAHGDVLARFA 716

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                         ++       +       L  +  +  L        +++      +  
Sbjct: 717  ASAPAPQRAGVLANLRALLGAALQQDGGRYLTPYAFVRALRKG----GIAAPARADAQAV 772

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              +  +  + ++  + L+     +PK  ++  + +    E  L       +   +E   P
Sbjct: 773  RLLTVHGAKGLEAHSVLLLDTDARPKSAETMAVLVDWPGEEPLPRR---FIFLASESSPP 829

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
             +        R  +    L T             +    R L  +     +  P      
Sbjct: 830  PSAEGAMAAERAERQREALNT---------LYVAVTRAKRCLALSCVQSGSANPG----- 875

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
                                  +      L      P           +          +
Sbjct: 876  ---------------------SWWARLAPLMQQDADPQAGAMGAQDAGDGAFTLLELPRL 914

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
                       A   L +       +D   + +G   H ++ ++    +           
Sbjct: 915  ----------PAAPGLPVAAPRQPAQDSLASRQGQAMHALLEQVGVAGLPLAEARARGWG 964

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
            ++ +     +  LP         +   I +         ++ +E      P     + + 
Sbjct: 965  QERLAQLAREFALPLPAARAAARMAQAILNGAGAWAW-DEAQLELAVNEAPLTHQGQGL- 1022

Query: 896  IHLTGFADRI----DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
                   DR+    +        + DYK+   P     Q  +  QL     A++A
Sbjct: 1023 -----RLDRLVCLRERRGGARWWVLDYKSAAQP---ERQGDLVAQLQRYREAVRA 1069


>gi|237801766|ref|ZP_04590227.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|237806704|ref|ZP_04593408.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331024625|gb|EGI04681.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331027818|gb|EGI07873.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 727

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 64/708 (9%), Positives = 167/708 (23%), Gaps = 163/708 (23%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           ++ R L LA        +L+ R      ++   P S LS+  +   A  +   +  ++  
Sbjct: 23  SLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  ISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRLVKRVMRELGLDEQRWPA 141

Query: 198 RLVE---LNASSPVGY----------------------------------QIALMRAEAE 220
           R  +                                                 L+RA   
Sbjct: 142 RQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEAACQRAGVIDFSELLLRALDL 201

Query: 221 HLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            +++     +       +  +A   +  +V+   D       W 
Sbjct: 202 WRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++ +  SS+   +                              +       +    
Sbjct: 260 GAKIENIHQYSSDFPDTE--------------------------VIRLEQNYRSTASILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +   + N+  L  ++         + L  A NE +EA  +   +  +L    ++   A
Sbjct: 294 AANGLIINNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + +  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                 +    +   +      D+      R+              
Sbjct: 414 NVP--------------ARGIGEKTVEAIREHARHADVSMWEAMRLLVANKG-------- 451

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                       L       +   +    N ++    + +   T+  +     +      
Sbjct: 452 ------------LTGRAATALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLIA----- 494

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKS 625
                   E+G+       +++           + +       +             E  
Sbjct: 495 -YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHE 553

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++ ++    ++ L F  + L G+ EG++P                ++L+   +   +  
Sbjct: 554 DSIQLMTLHSAKGLEFPHVFLVGMEEGLFP--------------HKMSLEEPGRLEEERR 599

Query: 686 HDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             +       + L+ T +       +     + R +          ++
Sbjct: 600 LAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVR 647


>gi|332715658|ref|YP_004443124.1| exodeoxyribonuclease V, subunit beta [Agrobacterium sp. H13-3]
 gi|325062343|gb|ADY66033.1| exodeoxyribonuclease V, beta subunit [Agrobacterium sp. H13-3]
          Length = 1061

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 102/889 (11%), Positives = 208/889 (23%), Gaps = 109/889 (12%)

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V  +++ L L + +    + L    K       L +    +       +LA  I  +   
Sbjct: 222  VEKLEKNLALFKRVHRSPDLLDRDWKLWNDLRGLFVSNRSSKTPEGYDDLATAI--MAAA 279

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV-----GYQIALMRA 217
            +        L + K            +   + +  R   L             ++     
Sbjct: 280  DVLPAHPGPLADAKL--HLSCLIACAQEVMEAYETRKKALGLIDFADMITGAERLLRTDP 337

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 + G    +II     + P    L+  +  H    +++   D       +     +
Sbjct: 338  AVLQSVLGEIDCVIIDEFQDTNPVQFALLWQLGAHATRTLLV--GDVKQSIMGFQGADPR 395

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
             +   ++    +T P                  +   +    M   + +    F     S
Sbjct: 396  LSQALATANPDATQPL----------------DRNWRSTPAVMQFVNAMGVGLFGAHYNS 439

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREE-AISIAIAL-----------RMSLDEN 385
                 D        +       ++  A   +E  A  IA  L           R S    
Sbjct: 440  LTPTRDPTSGPALEVLIATKSRSVRTASKPQEHIAERIAAILTDGDTITDRFTRASRPAR 499

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                 ++      A R   EL   G+ + IS     +T+   +   + L       D  +
Sbjct: 500  PSDIVVLVCRHTTAARYAEELRARGVPVRISEDGW-ATSPVVTAARAALAFAANPADVHS 558

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
               L                        +    +  +   +    +++   A       +
Sbjct: 559  GLLL---------------RTLGPDPLPLQTALSAQTEGRLGDDPVLIRLAALSDKMASL 603

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
            P   +           L  D               +             K          
Sbjct: 604  PIGAALDLVLSVAGLRLWADCQPNAAASHADLLRLEAEANEFERAHRDLKAASGFHGETA 663

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                  L     E +        +   E    +  +A +  +    ++       +    
Sbjct: 664  KVFLGWLDARANERDFDRRPDPAANNAEAVEIVTWHASKGREWPITVVAELDNAIEDWPG 723

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ST      L+      D  ++ G    V               +  +  +  +       
Sbjct: 724  STTTRFDALDRI---DDMAVVLGSAALVH----TPGFAAPEATRRFIEDRREDFEANAKN 776

Query: 686  HDFEMANGTRHLIYTRS-----LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
              +      R  I          RE + P   + +             + LK  G     
Sbjct: 777  LLYVALTRARDRIVLEWPGFLKDREEDAPEATNLFHVFTDNCAPQIGTNCLKVGGVDCAA 836

Query: 741  WTRKLDYTTK-----------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
              ++L                 P +    P   +   P     S+ +     P       
Sbjct: 837  VIKQLPEMAGFTEFASSVSSVTPRFGPATPLAEIPLSPWRLQPSQSRSAGEVPGTR--SI 894

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             L   +            RGT  H  +   + +      P++ H +    +       L 
Sbjct: 895  ALGAPWPTTLND----AARGTALHLALRTYLTR------PDLAHRLPSATE-------LD 937

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909
                 +       + H               +   IP  +     G  + G  D + +  
Sbjct: 938  AATLDMISERATALKHWLAA------EGYTDLVAEIPV-LGFTRDGAEIPGTIDLLAIGS 990

Query: 910  SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
            +G + I D+K+G             PQLS  A  +    F Q   + VA
Sbjct: 991  NGCLLI-DHKSGG---SGEGLGPYWPQLSSYAGLVSE-LFPQHPLKGVA 1034


>gi|83954762|ref|ZP_00963473.1| Exodeoxyribonuclease V, beta subunit [Sulfitobacter sp. NAS-14.1]
 gi|83841046|gb|EAP80217.1| Exodeoxyribonuclease V, beta subunit [Sulfitobacter sp. NAS-14.1]
          Length = 1068

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 92/872 (10%), Positives = 189/872 (21%), Gaps = 98/872 (11%)

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            P   ++  L L R +      L            L    S         +LA  I     
Sbjct: 228  PRETLENNLALFRRVERDPAMLDRDWSLWQSLRSLFTSNSRTKTPEGYDDLALAIMQAAE 287

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS-----PVGYQIALMR 216
                      L + K    +       +   + +  R   L             ++    
Sbjct: 288  --VLPSHPGPLADAKL--HFQCLIACAQEVMEAYETRKKALGLIDYADMIAGAERLLRTD 343

Query: 217  AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                  +      +II     + P    L+  +       +++   D       +     
Sbjct: 344  PAVRQAVLDEIDCVIIDEFQDTNPVQFALLWQLGARAPRTLLV--GDVKQSIMGFQGADP 401

Query: 277  KSTNITSSNTTYSTHPQYSLAK-------LLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
            + +   ++    +  P     +        ++ +                       +  
Sbjct: 402  RLSQALAAANPDAKQPLDRNWRSTPAVMDFVNAMGAGLFGAGYNPLAPTRDPVSGPALEV 461

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
              +       + +   E+    I +       I   +            +   +      
Sbjct: 462  LNIVKGRGVRKYSKPQEHVAERIAQILQVGETITDRHS-----------KAPRNVRPSDI 510

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            AL+      A R   EL   G+ + I A    +T+       + L+     +D  A   L
Sbjct: 511  ALLVCRHATAARYAEELRARGVPVRI-AEDGWATSPVVQAARAALSYAANPDDTNAALVL 569

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
                                    +           ++   ++L   A       +P   
Sbjct: 570  ---------------RTLGPDPLSLQAAMQAQIQGRLEDDPVLLRLAALSDRLARLPISD 614

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
            +     +     +  D               +       S     K              
Sbjct: 615  AVDLVINASGLRIWADRQPDPAQARADLLRLEAEANDFESAHRDLKAAAGFHGESAKVFL 674

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
              L     E +        +   E    +  +A +  +    ++       +    ST  
Sbjct: 675  GWLDARASERDSDRRPDPAANSAEAVEIVTWHASKGREWPITVVAEFDHGIEDWPGSTAT 734

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                L         L    L                   +SD                + 
Sbjct: 735  RFTALHEIDDMDAVLASAALIHTPGLAAPEAERRFIEDRRSDFEANAKN-------LLYV 787

Query: 690  MANGTRHLIYTRS-----LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                 R  +          R+   P     +             D L+  G       R+
Sbjct: 788  AMTRARDRLVLEWPGFLKERDEEAPEAKCLFHVFTDACTPQIGGDTLRIGGIECPAIIRQ 847

Query: 745  LDYTT-----------KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
            L                 P   R  P P ++  P     S+    ++ P +        +
Sbjct: 848  LPEHAGFTAYSEAEITDTPRLGRDTPLPAVDLTPWRLQPSQATTALSAPES------QGI 901

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                 + +      RGT  H  +   + +               + +S  +   L     
Sbjct: 902  KLGTPWSRTVSDAARGTAIHLALRTCLTRP-------------DLTESLPKATGLDDTTL 948

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913
             +                         +   IP     +  G  + G  D + +   G +
Sbjct: 949  ALVAERAAA------LKAWLAADGYTDLLCEIPLLGRTK-EGAEIPGMIDLLAVGPRGCL 1001

Query: 914  DITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
             I D+KTG          L  PQLS  A  ++
Sbjct: 1002 LI-DHKTGGAG---EGFGLYWPQLSAYADLVR 1029


>gi|169797307|ref|YP_001715100.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii
           AYE]
 gi|213155883|ref|YP_002317928.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii
           AB0057]
 gi|215484744|ref|YP_002326979.1| ATP-dependent DNA helicase pcrA [Acinetobacter baumannii
           AB307-0294]
 gi|301346572|ref|ZP_07227313.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AB056]
 gi|301594476|ref|ZP_07239484.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AB059]
 gi|332852994|ref|ZP_08434504.1| UvrD/REP helicase [Acinetobacter baumannii 6013150]
 gi|332866444|ref|ZP_08437013.1| UvrD/REP helicase [Acinetobacter baumannii 6013113]
 gi|169150234|emb|CAM88130.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii
           AYE]
 gi|213055043|gb|ACJ39945.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii
           AB0057]
 gi|213986256|gb|ACJ56555.1| ATP-dependent DNA helicase pcrA [Acinetobacter baumannii
           AB307-0294]
 gi|332728930|gb|EGJ60285.1| UvrD/REP helicase [Acinetobacter baumannii 6013150]
 gi|332734601|gb|EGJ65708.1| UvrD/REP helicase [Acinetobacter baumannii 6013113]
          Length = 659

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 65/572 (11%), Positives = 144/572 (25%), Gaps = 63/572 (11%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    Y     L    + I   T+RA  E+ +   +  G ++  L    +       
Sbjct: 37  KTIVARAAYLIDQGLPANQIQILTFTRRAASEIVARVEQHVGAQAKGL-RASTFHTFCMY 95

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +          + +    L + RL+     K  D +     E       +      
Sbjct: 96  LLRRNPQAFGLTQFSIIDRDDQLLMFRLLRG---KDKDNVLPKAAELCDLYSYARNTQSK 152

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
           L++ L   +      +     +  L       +     +            L   +  S 
Sbjct: 153 LSEALLKQLPEAYEYK---SQIAEL----MKTYEQRKRE---------RNFLDYDDILSI 196

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
           V   +    A    +  G    +++     + P    L+  +        +    D    
Sbjct: 197 VAVHLQNSEALTNWV-AGFCQALLVDEMQDTNPLQWALLQPLIGKVK---LFCVGDDAQS 252

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +     ++ +                  ++  LD+     + + ++SN +   S + 
Sbjct: 253 IYGFRGADFENIHSFKERIPD---------AVIHTLDLNYRSTQEILDLSNWLLSHSPID 303

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
            +  L       +                    L    NE EEA  IA  L     +   
Sbjct: 304 YQKQLQAHRGKGQKPQ-----------------LHLFGNEFEEANWIAQDLIERHQQGAN 346

Query: 388 KS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                ++      AR ++       I      G+ L  + H   + SLL  +    D +A
Sbjct: 347 WYDHMVLVRSGYSARYLEGAFIAAEIPYRFIGGVKLLESAHVKDVLSLLRIVSNPQDDLA 406

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
               +       G  +   S+    L  ++    +        K  +            +
Sbjct: 407 WMRFLT---LWDGIGDVGASKLAQELMSISEVEERCQRLERHGKVPLQ--------AILI 455

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                 L +  +    L +D + + +      K           +    +   +  + + 
Sbjct: 456 LKQLDVLQQHVEASIGLALDALSEQLEQNYKTKDWSRRARDFDLVKQLARKHASLGEFLE 515

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                 +     E+ G         I      
Sbjct: 516 EYVLEPISISEIEKAGDDDLVTLITIHSAKGA 547


>gi|297616711|ref|YP_003701870.1| recombination helicase AddA [Syntrophothermus lipocalidus DSM 12680]
 gi|297144548|gb|ADI01305.1| recombination helicase AddA [Syntrophothermus lipocalidus DSM 12680]
          Length = 1250

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 83/993 (8%), Positives = 214/993 (21%), Gaps = 161/993 (16%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL----YPESPLSL 138
               E     D      L P         EL   +   R+++   I  +    +  +P   
Sbjct: 268  SWAELGEGFDGASFAGLKPLRKKDGIRSELQEQVKTIRDQVKKRIDSIRKTVFSRTPEQQ 327

Query: 139  PISPANAIWLAKNLADIIDII-ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                     + + L  ++    E      E    L       + L               
Sbjct: 328  ANDMRRMAPVVEALIGLVSEFGERYRGAKERRSVLDFSDLEHYCLRILS----------- 376

Query: 198  RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP-NGA 256
                         +     +      +     I++            +++ ++      +
Sbjct: 377  ------REDEGCDRFT--PSSIALEFRERFVEILVDEYQDINAVQEAILNLISKQEAKRS 428

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL--- 313
             +    D       +                           L      +   ++ +   
Sbjct: 429  SIFMVGDVKQSIYRFRLAEPGLFLEKYHRYPRQADNGERRIDLKQNYRSRDRVIEAVNYL 488

Query: 314  -------------------------------GNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                                           G        + +++  +    +  D    
Sbjct: 489  FGQIMAPGVAEMKYGGESELVPGSVYPDSDDGKDLGTEPVQLVIVDAAGDGVEPGDDSLE 548

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---------------NKK 387
            +  ++              +  +  + EA  +A  +     E                 +
Sbjct: 549  EQWDDDGVFSGSEEQGDNRVLFNQAQLEARLVAAEIERLRKEGVKVWDREAGDYRPLCFR 608

Query: 388  KSALITADRNLA-RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              A++      A +    EL R GI             +    + SLLN I      + +
Sbjct: 609  DIAVLLRTTRGAAQAFVEELRRAGIPAYAQVDTGYFDAIEVKTVLSLLNIIDNPRQDIPL 668

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              +++ P+  F   E    R             + +    +     L     +       
Sbjct: 669  LAVLRSPIGGFNAAELAEIRVHLPEGSFYEAAVRVAGKGDNPVGKKLQEFFRKLEGWRTV 728

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              +    E    L      +      P    +          +              +  
Sbjct: 729  ARRRGTKELLWNLFEDTGYYDYAGAMPGGKQRQANLRLLETWAARYENSSFTGLFHFLRF 788

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
             E  +           T  +      +    +  +  + ++     + G           
Sbjct: 789  VERMQENGWEMGTAAVTAEN-----DDAVRVVSIHRSKGLEFPLVFVAGLGRMFNFADLR 843

Query: 627  TLFILGTLESRLLNF----DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
               ++       L F      +    L +        +      +    + +  A + + 
Sbjct: 844  GKVLVHRKLGIGLEFVDRDLAVTYPTLAKLAVKNRIRREMLAEEMRLLYVAMTRAREKLV 903

Query: 683  Q---------AAHDFEMANGT-----RHLIYTRSL----RENNIPTIASRWLQRLLVLGG 724
                      +A ++  A  T        +  R+              +  L+     G 
Sbjct: 904  LVGTVKNLNKSAGEWCRAASTGADTLPEAVLARARCYLDWIAPAAVRQAGGLELWQRAGE 963

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI--KQLINDP 782
             +     +      +    +L+         +         +    +  +   +      
Sbjct: 964  ENGQQEGEVYFDVRVVKASELEERAATAPRPKDDDSLFTTGEGVELAAGDGLGEVERRLS 1023

Query: 783  YAVYARRILKLDFIPHFKK----------------------------------DPDRTDR 808
            +     + L         +                                       +R
Sbjct: 1024 WRYPWEKALGKKAKFSVTEARNIFAASGEWYGPEEEMRRTDFVSHPRFYRKTGGITAAER 1083

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            G++ H ++  +     +         +K+ ++    +E L P    I       I+  F 
Sbjct: 1084 GSIMHLVLQHV-----DPAKAGDVTGVKRELEEMVAREILGPD--QIEVVDIDAIAGLFA 1136

Query: 869  EHEEKI-QSSIEKIFVNIPAKMAIE------------SIGIHLTGFADRIDLLKSGFVDI 915
                +    + E +   +P  +++                + + G  D +     G   +
Sbjct: 1137 GELGRRIVRAGEAVLRELPFSLSLPAEELYSGELCGYGERVLVQGVIDCLLDEGDG-FVL 1195

Query: 916  TDYKTG--DNPKKETAQKLIDPQLSLEAAALKA 946
             DYKT      + E       PQ+ L A A++ 
Sbjct: 1196 IDYKTDELRPGRVEELVAKYRPQVDLYALAVER 1228


>gi|212703872|ref|ZP_03312000.1| hypothetical protein DESPIG_01924 [Desulfovibrio piger ATCC 29098]
 gi|212672689|gb|EEB33172.1| hypothetical protein DESPIG_01924 [Desulfovibrio piger ATCC 29098]
          Length = 1234

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 66/640 (10%), Positives = 162/640 (25%), Gaps = 62/640 (9%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEITGKKSTILPIIKSLGDVV 85
              LV   +Y     +  + +     T+RA QE+R         G     LP   +L  + 
Sbjct: 571  RVLVGRLQYLLAQGVPASHLLAVTFTRRAAQEMRQRLQAPAGDGAAPAALPRCDTLHALA 630

Query: 86   EEKFTADLLLSYNLN--------------------PPVSNIQRLLELARLILIWRNKLPD 125
                  +L  +  L                       +  +   L+ AR   +  ++LP 
Sbjct: 631  WSVVQRELPTALLLPEDAAKALFVDAGHPESREERKALRRLWDRLQWAREQGLPASELPG 690

Query: 126  IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
             ++    +   +  +   + +    +L +   +     ++ ED+              A 
Sbjct: 691  DLRAAVADWQAARTVRSQSPLLDYADLLEFF-LFHLRARQGEDIRPDLEHSLLPPACRAL 749

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
                +  ++   R    + ++  G      R EA H  +     + + G   +  A   L
Sbjct: 750  LAAAVTEQHRPARTDASSPATSAGPDTTTDRHEAPHKGRAVPRQMSLLGMVAATAAPGPL 809

Query: 246  ---MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
                   ++ P   +++  +    P  +   +         +       P  ++      
Sbjct: 810  PVPSRRASSLPWRHVLVDEVQDLSPVQLR--LIRALLPEDGNGFFGIGDPDQAIYGFRGA 867

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                 + ++ L              +   +      +         +  +++  + + L 
Sbjct: 868  SGQSEDSLRALWPSLRVCRLGQSYRASQGVLDMAQSLLQGRGHCGALQAMRREQARLHLF 927

Query: 363  EADNEREEAISIAIALRMSLDENKK-------------------KSALITADRNLARRVK 403
             A +++ EA  IA  +R  L                          A++   +     ++
Sbjct: 928  SAPDQQAEARWIAGRIRQLLGATAHTLMDQIAQEDELAGTLSPGDVAVLVRLKAQIPVIR 987

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNA---------IFKLNDFMAIATLVKHPL 454
              L + GI     A          + +  L  A              +   +  +++  L
Sbjct: 988  RALEQEGIPCAAPAQEDCWQDPLCAAVLRLAIARGQGEAPVPAGDGAEGDDLLPILEQAL 1047

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                       +A  A      R     +     K L        +    V     +   
Sbjct: 1048 DLPPDAPLPDPQALQARLSGHSRLPAPFWQGTAWKQLCRAWQDCGQWEALVQQLGLQHEA 1107

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
            E        V  +      L   K  +        + +        L  +   +    P 
Sbjct: 1108 ELIRARSEQVQILT-----LHASKGLEFQAVFLPGLEEGLLPMRRDL-LLENPDDDMSPA 1161

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                   +     +  +      +  +      +  R + 
Sbjct: 1162 AQAARLEEERRLFYVGLTRAARALYVSHSAGRRLFGRELA 1201


>gi|78213176|ref|YP_381955.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp.
            CC9605]
 gi|78197635|gb|ABB35400.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp.
            CC9605]
          Length = 1226

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 78/780 (10%), Positives = 190/780 (24%), Gaps = 76/780 (9%)

Query: 187  FLKIASKYWTERLVELNASSPVGYQIA------LMRAEAEHLMKGTKGPIIIAGSTGSIP 240
             L+   +    R       +  G   A       +   A          +++     + P
Sbjct: 366  LLERCLQELDRRRRRRGVITFGGLLAAMDPGDGAVAWLAPLQQ--RYRAVMVDEFQDTDP 423

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
               RL+          ++L   D       +      +            H       LL
Sbjct: 424  VQWRLLQRAFGAGERHLLLMVGDPKQAIYRFRGGDLATYMAARDQVERIDH-------LL 476

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
            D        ++ L  +      RS ++  +  P  ++           +    +  S  +
Sbjct: 477  DNFRTTAPLMEGLNRLMAPGLPRSELLVPAVQPRSSATPPQDAPALQLLLLSTEAPSSRS 536

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
             +EAD  R  A  +   L+   D       ++ +    A  ++  L   G+   +     
Sbjct: 537  ALEADLPRRLAAMVLQQLQQRDDLTPADLCVLVSRHQQAEDLRRALGACGLPTRLVTQGD 596

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            +  +  + +L   L+A+ +  D   +  L    L           R       V LRG  
Sbjct: 597  VLDSEAALLLQWFLDALVEPGDDARLRLLACSGLMNIAPDALEPGRLDQLA--VQLRGWA 654

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                 + L   + D ++ ++        +     +     V    H              
Sbjct: 655  ELMPRLGLLGALADLLSGEQMAGLSERGRMLGDLQQAARLVQEAMHRQGLDVATAADWLR 714

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLD--EHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
            +     +  + +  +       +       HR     +       L      +       
Sbjct: 715  RERLHPSQPVPEARQPHSDQADSAIAVVTVHRSKGLEYPVVICPYLWQSPPAVSGPLWRD 774

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
              +      +     +G     + ++ +           +    T ++         +++
Sbjct: 775  PRSGECLARVDVHWGEGWQAAQQAQQDAAAEAERLAYVAVTRAQTQLILIWARANGQEDS 834

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
                +L     +       +            A   R +  +    +  + ++ S    R
Sbjct: 835  PLPAWLFGAEAAG------DAIDSLTDERLRQALAERQVPIS---IDGLVESLPSGKRWR 885

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWT---RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
              +        ++ KR             +  +     +++ +   P   +  + S  E+
Sbjct: 886  PPLQAEPLALGSIPKRIDRSWGRASYSAWIASSDDVQLHEQGRDRDPGAEESTSESTLEL 945

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
                       AR              P     G   H I+ +          P   H +
Sbjct: 946  MA---------ARAEQAWSKTGPLAAFPRGAGAGDCLHRILEQFPFSAAEATEPRQRHEL 996

Query: 836  K-------------------------------QIIDSHFEKENLPPHIDIIWRHL---FH 861
                                             +     ++      +  +   L     
Sbjct: 997  IVAELRLAGLDPDLQNDVLTGLEQVLQTPLGGPLGALSLDRLGPHQRLPELSFDLPVQHV 1056

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS-GFVDITDYKT 920
            + +          ++   + +    A ++I S G  LTG  D +          + D+K+
Sbjct: 1057 RTADLVAAFGCDAEARFGRSYSPALASLSINSRGF-LTGSIDLVFQDPQHQRWWVLDWKS 1115


>gi|313668736|ref|YP_004049020.1| exodeoxyribonuclease V beta chain [Neisseria lactamica ST-640]
 gi|313006198|emb|CBN87660.1| putative exodeoxyribonuclease V beta chain [Neisseria lactamica
            020-06]
          Length = 1204

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 81/930 (8%), Positives = 214/930 (23%), Gaps = 115/930 (12%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174
            L      +L  +  D             A      + LAD         +  + L   + 
Sbjct: 291  LEAKLHERLLKLSSDKLEAGLKKGKTPDAAVFAELQKLADF-------GRDLDALEEAEE 343

Query: 175  EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGP 229
                   L    +L  +     +   E      +      +            +      
Sbjct: 344  ATMIRLQLDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAEILARAVAENWET 403

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
             +I     + P    +   +        +    D       +         + ++     
Sbjct: 404  ALIDEFQDTDPLQYEIFQKIF-IAQNRPLFLVGDPKQAIYSFRGADIY-AYLQAAGDAQH 461

Query: 290  THPQYSLAK----------LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
             +   +  +           L  L  +   ++ +G            +S          +
Sbjct: 462  RYTLATNYRSHSALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPERPAVQVRWL 521

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
               D  +     +++  +D    E  +   EA    +  +    ++   + L+       
Sbjct: 522  HENDNEKTNKDVLRRRAADYCADEIAHALNEAAGGRLNFKGCPLQSGDIAVLVRTHNEAV 581

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
                    R   ++ +S    +  +  ++ L++L+    +      +  ++   +  +  
Sbjct: 582  MVSAALKKRQVQSVLLS-RESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGYD- 639

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                       L       ++  +     ++ + +          +  +      E + L
Sbjct: 640  --------AQQLHDFNQNESEILHWAESARNALDNWNQYGIFA-AMQQFSQTHGIETRLL 690

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
            +      +      L              ++  W +  ++   N   D           E
Sbjct: 691  SRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNGGDNRAIR-----LE 745

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--TVKPKIEKSSTLFILGTLESR 637
              + L  + +     G         +          +   +     ++  L      E  
Sbjct: 746  SDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQLSEDE 805

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
               +    +      ++   T     L+  + +  +  TA+  +            +R  
Sbjct: 806  QKQYADEEMAERLRLLYVALTRAEEQLN--IYAAYSSDTADNPLAYLIEGLPQ--DSRET 861

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
            +     RE +   +  R  QRL     +       +       +      T +      P
Sbjct: 862  VRQIYDREKDGIAMLKRNWQRLTDNAPSGTDFAFTEDAPPPAAYRGNAGQTAEFAANSIP 921

Query: 758  KPFPPLEAQPRTYSFSEIKQ------LINDPYAVYARRILKLDFIPHFKKD--------P 803
            +            + S   Q          P    A   +                   P
Sbjct: 922  ERRFRFVRHTSFTALSRQSQTPDDGEEDACPSLDAAETSVPAMPSETPTASDGISIHDFP 981

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH----- 858
              T  G   H I+ +    +  +       L+   +  +  +E   P +  +        
Sbjct: 982  KGTQAGLCLHEILEDF---KFGQAAAGQETLITDKLKKYGFEEIWLPAVAEMAEACRKTP 1038

Query: 859  ----------------------------LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                                           ++   F   +      + +          
Sbjct: 1039 LTGAYCLSDIPPEYRCPEMGFTLHTEDFGLKRLRDWFARDDI-RLPEVCRAAAE-----T 1092

Query: 891  IESIGIH--LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK-----------LIDPQL 937
            ++   ++  L GF D I     G + + DYK+       +A                 Q 
Sbjct: 1093 LDFHTVNGFLNGFVDMICQDPDGNICVIDYKSNHLGTDASAYTRQAMDEAVAHHHYYLQA 1152

Query: 938  SLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
             + A A       +       ++ Y+ L+ 
Sbjct: 1153 LIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1182


>gi|240016125|ref|ZP_04722665.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA6140]
          Length = 1200

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 83/889 (9%), Positives = 215/889 (24%), Gaps = 103/889 (11%)

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
            A +   ++       DL+AL+  +      L  D ++  +    E              +
Sbjct: 319  AAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSRRERGFDDLLL 378

Query: 213  ALMRAEAEHLMKGTKGPII--------IAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
             +  A  ++    T    +        I     + P    +   +        +    D 
Sbjct: 379  DVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF-IARNRPLFLVGDP 437

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                  +         + ++      +   +  +    L      + RL      +    
Sbjct: 438  KQAIYSFRGADIY-AYLQAAEDARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIG 496

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS--- 381
                 +         +   +    +       ++  ++        A  IA AL  +   
Sbjct: 497  YSEVGAARAESRLSPKRPAVQLRWLHENDNEKANKDVLRRRAADYCADEIARALNEASGG 556

Query: 382  -LDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
             L+   +       A++    N A  +   L +  +   + +   +  +  ++ L++L+ 
Sbjct: 557  RLNFKGRPLQSGDIAVLVRTHNEAVMISAALKKRQVQSVLLSRESVFASPEAAALSALIG 616

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
               +      +  ++   +  +   +               +         +     LD 
Sbjct: 617  FWLEPRRAGTLRFVLTSGIFGYDAQQL----------HDFNQNESEILHWAESARTALDI 666

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                     +  +      E + L+      +      L              ++  W +
Sbjct: 667  WQKYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLR 726

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
              ++   N   D           E  + L  + +     G         +          
Sbjct: 727  DQISLAGNNGGDNRAIR-----LESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPS 781

Query: 616  E--TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            +   +     ++  L      ES    +    +      ++   T     L+  + +  +
Sbjct: 782  DWQILHQGANRAELLAKAQLSESEQKQYADEEMAERLRLLYVALTRAEEQLN--IYAAYS 839

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
              TA+  +          +    +  T +  ++ I  +  R  +R+             +
Sbjct: 840  SDTADNPLAYLIEGLPQ-DSRETVRRTYACEKDGITMLK-RNWRRVADNAPAGTDFAFTE 897

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ------LINDPYAVYA 787
                   +    D   +      P+            + S   Q          P    A
Sbjct: 898  DAPPPAAYRGNADQAAEFAANSIPERGFRFVRHTSFTALSRQTQTPDGGEEDACPSLDAA 957

Query: 788  RRILKLDFIPHFKKD--------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
               +                   P  T  G   H I+ +    +  +   E   L+   +
Sbjct: 958  ETSVPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDF---KFGQAAAEQETLIADKL 1014

Query: 840  DSHFEKENLPPHIDIIWRHLFH--------------------------------KISHSF 867
              +  +E   P +  +                                      K    +
Sbjct: 1015 KKYGFEEIWLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDW 1074

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYK------ 919
            L  ++     + +          ++   ++  L GF D +     G + I DYK      
Sbjct: 1075 LARDDIRLPEVCRAAAE-----TLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSA 1129

Query: 920  -TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
             T     +  A +    Q  + A A       +       ++ Y+ L+ 
Sbjct: 1130 YTRQAMDEAVAHQHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|227115358|ref|ZP_03829014.1| exonuclease V subunit beta [Pectobacterium carotovorum subsp.
            brasiliensis PBR1692]
          Length = 1193

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 99/899 (11%), Positives = 228/899 (25%), Gaps = 107/899 (11%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + D  E   +    L  L         + A   ++ +      +  EL     +     
Sbjct: 316  TLFDETERLLEAPLSLRDLVI-------VRALSAIRESVSEEKRQRAELGFDDLLSRLDV 368

Query: 214  LMRA----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             ++     +    ++      +I     + P   R+   +    +   +L   D      
Sbjct: 369  ALQESGGEQLASAIRERYPVAMIDEFQDTDPQQYRIFRMLYVGQSQCGLLLIGDPKQAIY 428

Query: 270  IWNTITEKS--------TNITSSNTTYSTHPQ--YSLAKLLDFLDIKREDVKRLGNVSNE 319
             +      +            +  T + +  Q  + + +L + LD               
Sbjct: 429  AFRGADIFTYMHARGEVAAHYTLGTNWRSSHQMVHGVNRLFERLDSPFIFQNIPFLPVKP 488

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKI------PNIQKCFSDVALIEADNEREEAIS 373
               +  ++ +    P  +        E            ++C + +    A ++R EA  
Sbjct: 489  AESKRGLVFEVAGQPQPALQFWLTGSEPIGVGDYQQQMARQCAAQIRDWLAASQRNEAWL 548

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTS 432
            +    R  +       +++   R  A  ++  L+R  I  + +S    + +T  +S +  
Sbjct: 549  VTDDSRRLVRA--SDMSVLVRSRREASLIRDALSRLSIPSVYLSNRDSVFSTPEASDMLW 606

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            LL A+        + + +   L      +        A     +        +   + ++
Sbjct: 607  LLQAVLAPEQERTLRSAMATALMGLDAEQVDALGQSEAAWDALVDEFAGYRALWRQRGVL 666

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                A    +                    L +++L             +        S 
Sbjct: 667  PMLRALMSRH-------------------QLAENLLASAEGERRITDILHIGELLQDASA 707

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI--IETGSCIKANAIEWIDIIT 610
                    ++ +     +  P    ++          +I  I     ++   +    I  
Sbjct: 708  TLDSEHALVRWLSQQIVQPNPQAENQQLRLESDRHLVQIVTIHKSKGLEYPLVWLPFISN 767

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS----R 666
              +  + +    E    +  L   E      +   L      ++   T      S     
Sbjct: 768  FRVQDQGIYHDRESYQAVLDLQNNEESQTLAEEERLAEDLRLLYVALTRSIYHCSVGVAP 827

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
            V +S     +++ +     +  +             L       +A   LQ +       
Sbjct: 828  VQRSRKKDGSSDMHQSALGYLLQRGKEAEAATLVSELEGMVGDGVALTPLQAMEE----- 882

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                  +R Q       +L     +   +            +  S S    +        
Sbjct: 883  ------QRWQPDRPELAELRARHIERQLRDGWRVTSYSGLQQHGSASAQDLVPRLDIEAI 936

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIIT--ELIKKRINKNTPEINHL---------- 834
              R    +        P     GT  H++    +  +   +    E   L          
Sbjct: 937  GERQEADETQLTPHTFPRGASPGTFLHSLFETLDFTQPVEDDWLAEQLQLQGFEAHWHPV 996

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI------PAK 888
            +K  +D+          I +       K +   L+    I + I+   ++       P  
Sbjct: 997  LKAWMDTLLHTPLNEQGIALSALENADKQAE--LQFYIPIGAPIQAAQLDRLAKHHDPLS 1054

Query: 889  MAIESIGIH-----LTGFADRIDLLKSGFVDITDYK-----------TGDNPKKETAQKL 932
                ++        L GF D +   + G   + DYK           T     +  A+  
Sbjct: 1055 ARCPALSFQQVKGMLKGFIDLVFRWE-GRYYLLDYKSNWLGPDASAYTQTAMMQSMAEHR 1113

Query: 933  IDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
             D Q  L   AL      +I      R    +FY+ L+   +            + E  
Sbjct: 1114 YDLQYQLYTLALHRYLRHRIADYDYERHFGGVFYLFLRGVEESHPGNGIFACRPSAEFV 1172


>gi|306822219|ref|ZP_07455601.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309802208|ref|ZP_07696316.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
 gi|304554601|gb|EFM42506.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221091|gb|EFO77395.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
          Length = 1355

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/727 (8%), Positives = 174/727 (23%), Gaps = 59/727 (8%)

Query: 58  QELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL 117
           + +R        +  T LP +                    L   ++  ++ + + R++ 
Sbjct: 57  RVIRELSAISQARPVTTLPAV-----AFRIVTAVRSRAGLPLPKLLNGAEQDMIIRRVLA 111

Query: 118 IWRN--------KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
              +         + D+++  +  +  S  ++  +    A  L D++  +     K E  
Sbjct: 112 SHVDHTNRGDECAVCDLLRTYFAVADWSGMVADDSTDAFANQLRDMLARMNEIGAKPELE 171

Query: 170 HALK-------------NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             L              +E+    W LA        +                  +    
Sbjct: 172 DGLIARAASKDGTLNERHERMRTQWRLAFALRAEYDEAIRAAYPGEYRLDASQLMVDAAA 231

Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC-------HIPTA 269
              +  ++     +I+     +  A   +++ +       +++   D          P  
Sbjct: 232 TVTQAEIEDLPKLLIVDDFQDATLAGFDMLAALHGRGVRLLLVGNPDESVQTFRGSYPEY 291

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
           ++N    +            T  +    + L    +                    + + 
Sbjct: 292 LFNAAQSRLEARLERIDVTETEQRKPTYRTLAASRVSLSIASTEPTDEALPSRPGKMPAL 351

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
               P  +      +      +     +        +  EE   +   ++    ++ +  
Sbjct: 352 PGSLPIEAVPTGVSVDGISPDDGSIGTAMYR-----SAVEELDDVVWRIKTEHLQHSRDW 406

Query: 390 ---ALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMA 445
              A+I  D +  R     L   G+ +  S+   PL        L +L+           
Sbjct: 407 NDMAVIAHDNDTVRTFGERLRADGVPVRYSSVTRPLKDEPFVQGLFALIELAG------- 459

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              L K  +A      +       +   + +     +            R+AT ++  + 
Sbjct: 460 ---LKKQTIAASKMGLRTAGAYIRSRVALIMNSPLITVGGDAQHEGRPARLATVESAMNA 516

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
               + + E D    +   D        L+                         L  + 
Sbjct: 517 LGSLAAVLESDDSGELDDSDRADVAKQALLPRLIADWKDYVVDL------RNSRQLTRMS 570

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                  P +  ++   +   L S  +   S +         ++        +       
Sbjct: 571 DSADSATPTIAVDDSLMSEERLDSADLVDPSDLPFGVDALYVLLLEGNTDRVLDAIASVL 630

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
                     S     D  I               +   +   ++ +  + + +      
Sbjct: 631 GADPQSKAFASLWKVLDKTIEAERKLISREPQYVLDCAWTACDKARIWQRVSLENSAAGR 690

Query: 686 HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
              +  +    L ++ +  + +   +A+  +   +        +         +D    L
Sbjct: 691 AANDRLDAAMRL-FSYASGDESGGVLAAHTIGAFIEQVRALTIEADSLAHTAPIDQAVTL 749

Query: 746 DYTTKQP 752
                  
Sbjct: 750 TTPAGAA 756



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 892  ESIGIHLTGFADRIDLL----KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            E + I L+G  DR++          V + DYKTG     +      D QL+     L   
Sbjct: 1142 ERLTIRLSGRIDRLERRVLSGGGEQVRLIDYKTGKQLSGQDMFS--DLQLACYQLGL--- 1196

Query: 948  SFSQIDCRKVANLF 961
            +F +   R    + 
Sbjct: 1197 AFPEEGPRGAQAIA 1210


>gi|71734750|ref|YP_277224.1| DNA-dependent helicase II [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71555303|gb|AAZ34514.1| DNA helicase II [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 727

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 63/708 (8%), Positives = 165/708 (23%), Gaps = 163/708 (23%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           ++ R L LA        +L+ R      ++   P S LS+  +   A  +   +  ++  
Sbjct: 23  SLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  ISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRLVKRVMRELGLDEQRWPA 141

Query: 198 RLVE---LNASSPVGY----------------------------------QIALMRAEAE 220
           R  +                                                 L+RA   
Sbjct: 142 RQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDL 201

Query: 221 HLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            +++     +       +  +A   +  +V+   D       W 
Sbjct: 202 WRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++ +  SS+   +                              +       +    
Sbjct: 260 GAKIENIHQYSSDFPDTE--------------------------VIRLEQNYRSTASILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +   + N+  L  ++         + L  A NE +EA  +   +  +L    ++   A
Sbjct: 294 AANGLIVNNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + +  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                 +    +   +      D+      R+              
Sbjct: 414 NVP--------------ARGIGEKTVEAIREHARHADVSMWEAMRLLVANKG-------- 451

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                       L       +   +    N ++    + +       +     +      
Sbjct: 452 ------------LTGRAATALGGFIELIENLSAKAMEMPL------HLMTQTVIEQSGLI 493

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKS 625
                   E+G+       +++           + +       +             E  
Sbjct: 494 TYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHE 553

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++ ++    ++ L F  + L G+ EG++P                ++L+   +   +  
Sbjct: 554 DSIQLMTLHSAKGLEFPHVFLVGMEEGLFP--------------HKMSLEEPGRLEEERR 599

Query: 686 HDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             +       + L+ T +       +     + R +          ++
Sbjct: 600 LAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVR 647


>gi|149921690|ref|ZP_01910138.1| ATP-dependent DNA helicase PcrA [Plesiocystis pacifica SIR-1]
 gi|149817428|gb|EDM76900.1| ATP-dependent DNA helicase PcrA [Plesiocystis pacifica SIR-1]
          Length = 845

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 88/738 (11%), Positives = 195/738 (26%), Gaps = 122/738 (16%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL----PIIKSLGD 83
             + +         +    +     T +A  E+R     +   +   L    P I +   
Sbjct: 34  RVITQRVAALIDEGVPAWRILAVTFTNKAAGEMRERIAGLLEMELDELRRDGPWIGTFHS 93

Query: 84  VVEEKFTADL-LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
           +           +    N  + +      L R +L    K  DI    +  S     I  
Sbjct: 94  ICARILRRHGQGVGLTRNFSIYDADDQKTLMRRVL----KDLDIDPKAFSASAALGKIDA 149

Query: 143 ANAIWLAKNLADIIDIIETEEKKWED---------LHALKNEKYGMWWLLAADFLKIASK 193
           A  +  A++  D ++        W           L A     +     LA + L+ A  
Sbjct: 150 AKNLGYARHQLDAMN-YSEPVASWTRKAWTLYEGRLRAADAVDFNDLLALAVELLRKAKP 208

Query: 194 YWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG---------------------PIII 232
              +       S       +  R  A    +G                         +++
Sbjct: 209 AQPQPGARSFGSGSGSGSGSGARRMALRTTRGPGSGAPTASGGAVNPVLGLRRRFFHVVV 268

Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
                + P  A L+  +      A +    D       W     K             HP
Sbjct: 269 DEFQDTNPVQAELVELLCG--PSAQLCVVGDDDQAIYGWRGADVKQILNFPDR-----HP 321

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
              + +L                        + ++  +         R++  L + +   
Sbjct: 322 GCEVIRLEQNYRST-----------------THILDCANAVIRGGARRHSKRLWSDLGPG 364

Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFG 410
           ++      L    +ER+EA  +A  +R ++DE +     A+       +R ++  +   G
Sbjct: 365 ERA----ELHGFADERDEAQYVARRVRRAIDEGESPGEIAVFYRTHAQSRPLEEAMRLAG 420

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
           +   +  GI          L + L  +      +    ++  P  + G        A   
Sbjct: 421 VRYRMLGGIRFFDRREIKDLIAYLRLLTNPGSDLDCLRVINVPARRIGARTIERLSAWAI 480

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
            +  +L            ++ +                  R   E+          +L  
Sbjct: 481 SKESSLYDACGPASKHGEEAGLGRAAVKAVKGFWELVEGLRDDSEELSHHET-ASLVLGR 539

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
              L ++   +++     ++ ++        +               E+   +L+    +
Sbjct: 540 TNYLESFAAEQDAETRTENLYEFRGALEEFGE---------------EQPDVSLAEYLEQ 584

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
           I       +A                         + + ++    ++ L FD ++L G+ 
Sbjct: 585 ISLAAGGDEATV----------------------DAAITLMTIHSAKGLEFDRVMLTGME 622

Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIP 709
           E V+P   + +P   +           E    +    +   +  R  L  +   R     
Sbjct: 623 ERVFPHVRSLDPENPK---------GREALEEERRLAYVAISRARRWLSLSFVERRFLWG 673

Query: 710 T----IASRWLQRLLVLG 723
           +      SR+L+ L   G
Sbjct: 674 STQLNEPSRFLRALPEEG 691


>gi|332533746|ref|ZP_08409604.1| ATP-dependent DNA helicase Rep [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036801|gb|EGI73263.1| ATP-dependent DNA helicase Rep [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 672

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 75/688 (10%), Positives = 175/688 (25%), Gaps = 122/688 (17%)

Query: 50  YVPTKRAIQELRSEFIEITG---KKSTILPIIKSLG-DVVEEKFTADLLLSYNLNPPVSN 105
              T +A +E+R   ++  G    K   +    +LG ++++++ +               
Sbjct: 53  VTFTNKAAKEMRERVLQTLGKQDAKGLWVSTFHTLGLEIIKKELSTLGFKPG-------- 104

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                 L          L ++ +D   +    L +           L  + +    E + 
Sbjct: 105 ----FSLFD-DQDTNQLLSELTEDELKKDKDLLKLLKMEIGSWKNELV-LPEQAIREARD 158

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI---ALMRAEAEHL 222
            +                           +  +L   NA       +    L+   A   
Sbjct: 159 PQK-----------------ALFAQLYARYQNQLRAYNALDFDDLIMIPTLLLTNNATSR 201

Query: 223 MK--GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
            +       +++     +  +  +L+  +      A      D       W     ++  
Sbjct: 202 ERWQQRFKYLLVDEYQDTNTSQYQLVKLLVG--ERARFTVVGDDDQSIYSWRGARPQNL- 258

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     +P   L KL                 +    GR +  +   +  +  D+ 
Sbjct: 259 ----VLLGKDYPGLRLIKL---------------EQNYRSAGRILKAANILIANNPHDIE 299

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEA-ISIAIALRMSL--DENKKKSALITADRN 397
                E            + +I   +E  E+   +A  +        + K  A++    +
Sbjct: 300 KKLFSELGYGEP------IKVIGCRDEEHESERVVAEIISHKFMKRTSYKDYAILYRGNH 353

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            AR  +  L    I   IS G+          + + L  +   +D  A   +V  P    
Sbjct: 354 QARGFEKSLMSNRIPYKISGGMSFFARSEIKDIMAYLRLLVNQDDDNAFLRIVNTP---- 409

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                              R    +  +  L +L  ++ A+            RL     
Sbjct: 410 -------------------RREIGTVTLEKLGTLANEKHASLFATCFDNDLGYRLKGRGF 450

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                    +       V    N        ++ D  +               K   +  
Sbjct: 451 NALAGFARWV-------VELSDNAVRGDTLEAVKDLVRNINYEAYLYESSPSAKAAEMRM 503

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +   +    +   +            E +  +  L D      + +++  + +     S+
Sbjct: 504 KNVSELYRWITDMLTGDADNEPMTLAEVVSKL-TLRDMLERNEEEDETDAVHLSTLHASK 562

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RH 696
            L +  + + G+ EG+ P   + +                +    +    +       + 
Sbjct: 563 GLEYPYVFMVGMEEGLLPHQVSID---------------EDNVDEERRLAYVGITRAQQE 607

Query: 697 LIYTRS----LRENNIPTIASRWLQRLL 720
           L  T +           T  SR++Q L 
Sbjct: 608 LTLTYAKIRRQFGETSQTELSRFVQELP 635


>gi|304387905|ref|ZP_07370078.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis ATCC
            13091]
 gi|304338002|gb|EFM04139.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis ATCC
            13091]
          Length = 1212

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 87/934 (9%), Positives = 215/934 (23%), Gaps = 123/934 (13%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174
            L      +L  +  D             A      + LAD              L   + 
Sbjct: 299  LDKDTHERLLKLASDKLEARLKKGKTPDAAVFAELQKLADF-------GYDLNALEEAEE 351

Query: 175  E-------KYGMWWLLAADFL--KIASKYWTERLVE-LNASSPVGYQIALMRAEAEHLMK 224
                        +   +   +      + + + L++   A +   +   L RA AE+   
Sbjct: 352  ATIIRLQLDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAENWET 411

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT--EKSTNIT 282
                  +I     + P    +   +        +    D       +             
Sbjct: 412  A-----LIDEFQDTDPLQYEIFQKIF-IAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAE 465

Query: 283  SSNTTYSTHPQYSLAKLL-------DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
             +   Y+    Y     L         L  +   ++ +G            +S       
Sbjct: 466  DARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQ 525

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395
               +   D  +     +++  +D    E  +   EA    +  +    ++   + L+   
Sbjct: 526  VRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNFKGCPLQSGDIAVLVRTH 585

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
                        R   ++ +S    +  +  ++ L++L+    +      +  ++   + 
Sbjct: 586  NEAVMVSAALKKRQVQSVLLS-RESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIF 644

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             +   +               +         +     LD          +  +      E
Sbjct: 645  GYNAQQL----------HDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIE 694

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             + L+      +      L              ++  W +  ++   N   D        
Sbjct: 695  TRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNGGDNRAIR--- 751

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--TVKPKIEKSSTLFILGT 633
               E  + L  + +     G         +          +   +     ++  L     
Sbjct: 752  --LESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQL 809

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             E     +    +      ++   T     L+  + +  +  TA+  +            
Sbjct: 810  SEDEQKQYADEEMAERLRLLYVALTRAEEQLN--IYAAYSTNTADNPLAYLIEGLPQ--D 865

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
            +R  +     RE +   +  R  +RL             +       +      T +   
Sbjct: 866  SRETVRQTYDREKDGIAMLKRNWRRLTDNAPAGTDFAFTEDAPPPAAYRGNAGQTAEFAA 925

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQ------LINDPYAVYARRILKLDFIPHFKKD----- 802
               P+            + S   Q          P    A   +                
Sbjct: 926  NSIPERRFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPSETPTASDGISI 985

Query: 803  ---PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH- 858
               P  T  G   H I+ +    +  +       L+   +  +  +E   P +  +    
Sbjct: 986  HDFPKGTQAGLCLHEILEDF---KFGQAAAGQETLIADKLKKYGFEEIWLPAVAEMAEAC 1042

Query: 859  --------------------------------LFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                                               ++   F   +      + +      
Sbjct: 1043 QKTPLTGAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDI-RLPEVCRAAAE-- 1099

Query: 887  AKMAIESIGIH--LTGFADRIDLLKSGFVDITDYK-----------TGDNPKKETAQKLI 933
                ++   ++  L GF D +     G + + DYK           T     +  A    
Sbjct: 1100 ---TLDFHTVNGFLNGFIDMVCQDPDGNICVIDYKSNHLGADASAYTQQAMDEAVAHHHY 1156

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
              Q  + A A       +       ++ Y+ L+ 
Sbjct: 1157 YLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1190


>gi|257463715|ref|ZP_05628104.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12]
 gi|317061259|ref|ZP_07925744.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12]
 gi|313686935|gb|EFS23770.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12]
          Length = 717

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/414 (10%), Positives = 117/414 (28%), Gaps = 63/414 (15%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADL-LLSYNLNPPVSN 105
           +     T +A +E++   I + G+++     I +               L Y  N  + +
Sbjct: 54  ILAVTFTNKAAKEMKERVISLIGEEAERA-TISTFHSFGVRLLRIYGNKLGYQANFTIYD 112

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++      R+I     +L     DL                   K LA +I  ++ E   
Sbjct: 113 VEDQ---KRIIKAIMKELNLQNTDLSE-----------------KKLASLISKLKEEGIS 152

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY----QIALMRAEAEH 221
            +D      +    +       +    + +  RL   N           +  L   E   
Sbjct: 153 ADDY----EKDNYEYEAKI---IAEIYRRYDARLKNQNGIDFSDILLNTRKLLDIPEILE 205

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
            ++     I++     +      +++ +A       V+   D +     +     ++   
Sbjct: 206 KIQNKYQYIMVDEYQDTNNIQYEIVNKIAQKHRNICVV--GDENQSIYGFRGANIQNILN 263

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
              +             ++  L+        +   +N +   ++      L  +      
Sbjct: 264 FEKDYQD---------AMVVKLEQNYRSTAMILEAANAVIRNNLSSKDKNLWTNK----- 309

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLA 399
                       +    + +++A N+R+E   +   +          +   ++      +
Sbjct: 310 ------------ENGDKIKVLKALNQRDEVEKVISEIAKEKQKGRAYRDMTILYRTNAQS 357

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
           R  +    R+ I   I  G+          + + L+ I    D   +  ++  P
Sbjct: 358 RVFEEAFLRYRIPYKIFGGMQFYQRAEIKDILAYLSLINNPLDETNLLRIINIP 411


>gi|309812345|ref|ZP_07706100.1| exodeoxyribonuclease V, beta subunit [Dermacoccus sp. Ellin185]
 gi|308433650|gb|EFP57527.1| exodeoxyribonuclease V, beta subunit [Dermacoccus sp. Ellin185]
          Length = 1127

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 95/958 (9%), Positives = 223/958 (23%), Gaps = 91/958 (9%)

Query: 49   IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
            +   ++ A QELR    E   +  T L       D               L      + R
Sbjct: 69   VVTFSRAASQELRERVREQLERVLTRL-RQAPHDDDGVLVAALRSDDPGVLAERCDRLAR 127

Query: 109  LLELAR--LILIWRNKLPDIIKDLYPESPLSLPISP-ANAIWLAKNLADIIDIIETEEKK 165
             L      LI        D++K L          +   +   L   + D +  +    + 
Sbjct: 128  ALASFDSALIATIHQFCHDVLKGLGVAGDSDSFATLVEDTTGLRDEVIDDL-YVARRAQD 186

Query: 166  WEDLHALKNEKYGMWW-----------------LLAADFLKIASKYWTERLVELNA---S 205
                 + +  ++                         DF +     +  R          
Sbjct: 187  PSFDLSHERARFIGHCVLTNTGAALDAPADDSQRAVIDFAEALRNEYARRKRRAGILEYD 246

Query: 206  SPVGYQIALMRA---EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
              +      +RA    A   M+     +++     + P    +  T  +    +++L   
Sbjct: 247  DLLVDLRTALRATPSIARERMRARWSVVLVDEFQDTDPVQWEVFQTAFSEAGRSLIL-VG 305

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            D       +      +    S    + +    +       +D     +  +      +  
Sbjct: 306  DPKQAIYGFRGGDVHTYLRASQTAEHRSTLPTNYRSDGPLVDALGRLMGNVTLSPGIVAH 365

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                  ++      +       +           S VA  +      E ++       + 
Sbjct: 366  PVTADRETSRLVGDAAPIEMRWVNGDPLPAAGARSAVA-HDLAVRASELLASGTTFADAP 424

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                   A++        +V+ +L   GI   + +G  +  +   +    LL A+ + + 
Sbjct: 425  LAPHH-MAVLARTHAQLLQVREQLRAAGIPAVMMSGDSVLRSSAGAWWLELLLALEQPHR 483

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALEL-VALRGNKNSYDIMDLKSLVLDRIATQKN 501
               +      PL  +           +A E    +      +D   + +++    A    
Sbjct: 484  AQRVRAACLTPLIGWDVARIDALETADADESAELVHALAAQFDEGGIPAVMDALRARGML 543

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQC----ITPLVTYKTNKNSTCGNLSISDWTKLT 557
               +          D E    L+          I  LV +   +++    ++        
Sbjct: 544  ERLLARVGGERDVTDIEHCAQLLTERQLATGGGIAALVAWVQEQSAADAKVTADARLMRL 603

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
             +  Q V L        L +                +   I       +      +   +
Sbjct: 604  DSDAQAVTLSTIHASKGLQYPVVFAPTLWNRWDKDRSVPDIVYTEAGRVVSFDPGVINAS 663

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
               +      + +     +R  +   L               +  F      + L     
Sbjct: 664  RSHEEASGEEMRLAYVAMTRAQSKVVLWWAPTARSTSKSALHRLLFGQAADPASLGELLT 723

Query: 678  EKYIGQAAHDFEMANGTR--------HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             +   + +                   ++ T +       T      +   V       +
Sbjct: 724  RRTSDKGSEVITTTEQNGLPRGDKLFEILQTWAEHRAFTLTEVVPGAKPTPVHVAVSSDE 783

Query: 730  NLKKRGQCYL---DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                R    L    W R           +  +    +       +  +    +  P A  
Sbjct: 784  MNLSRFDPRLVDTSWRRTSYSALSAAGERADELAGVVSEPDAVGAQLDPDVDLALPQAPS 843

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL-------------------IKKRINKN 827
            A  +   D +      P     G+L H ++ E                    ++   + +
Sbjct: 844  APDVPGADALSPMHDQPLGATFGSLVHGVLEEADFQADDLDAELHRHIVEQQLRWPADVD 903

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHL------------------FHKISHSFLE 869
               +   ++ ++ + F        +  I                            +F +
Sbjct: 904  VDALVEALRGVLATPFGPLADDVCLRRIAMSDRIAEMDFEIPLGGGDTPHARATLRAFAD 963

Query: 870  HEEKIQSSIEKI-----FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
               +     + +      +           G  LTG  D       G   + DYKT  
Sbjct: 964  VLRRHLPEDDPLRPYADHLEASLLGEETLRGY-LTGSIDLTFRHG-GRYFVVDYKTNR 1019


>gi|269125448|ref|YP_003298818.1| hypothetical protein Tcur_1197 [Thermomonospora curvata DSM 43183]
 gi|268310406|gb|ACY96780.1| hypothetical protein Tcur_1197 [Thermomonospora curvata DSM 43183]
          Length = 312

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 13/185 (7%)

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
           +  +    + S +   +  P       + +           +    G   HN +    + 
Sbjct: 10  MPQRLYPCTPSRLNTWLECPRRYRMTYLDRPAPPKGPPWAHN--SLGLSVHNALASWWRL 67

Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
            + + TPE    +  ++     +          WR    +    +      +    E + 
Sbjct: 68  PLPERTPEAAGTL--LLRGWIAEGFRDAAQSAAWRERARRWVERYTG---GLDPVAEPVG 122

Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEA 941
           V     +A++++ I L G  DR+D  + G + + DYKTG   P  + A+  +   L   A
Sbjct: 123 VER--TVAVKTLRIALQGRIDRLD-DRDGQLVVVDYKTGRREPTADDARTSLA--LGGYA 177

Query: 942 AALKA 946
            A   
Sbjct: 178 VAAAH 182


>gi|312134286|ref|YP_004001624.1| uvrd/rep helicase [Caldicellulosiruptor owensensis OL]
 gi|311774337|gb|ADQ03824.1| UvrD/REP helicase [Caldicellulosiruptor owensensis OL]
          Length = 955

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 75/245 (30%), Gaps = 43/245 (17%)

Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF----KKDPDRTDRGTLFHNI 815
               E + +  S S I      P     + I+ L          +   +    GT  H +
Sbjct: 698 PDEFENRFKFLSPSHIMDFKRCPAMFSLKYIMGLPVFDELSSKEEIQQNTKVLGTTVHRV 757

Query: 816 IT-ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
           +    +K   + ++     +++   +S                 +  ++  +F E +   
Sbjct: 758 LELTSLKDIQSLDSNIALAVLENDFESE---------------KIVRELILNFFESQFVK 802

Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
           +   + I      +         + G  D++  L+   V + D+KT             D
Sbjct: 803 EIKDKVIKEESELRFYFNLGNQMIYGIIDKVYHLED-EVLLVDFKTN---------LHFD 852

Query: 935 --------PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
                   PQL +   A+K     +   + + +  +  L++  K D    ++      ++
Sbjct: 853 DTKFNIYIPQLFIYTMAMK----ERFPQKNIFSSIFW-LREGRKFDYELKEEHLEDVMDV 907

Query: 987 SEKSL 991
             +  
Sbjct: 908 IRRIR 912


>gi|193214838|ref|YP_001996037.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110]
 gi|193088315|gb|ACF13590.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110]
          Length = 700

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/413 (11%), Positives = 128/413 (30%), Gaps = 54/413 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK--SLGDVVEEKFTADLLLSYNLNPP 102
           + + +   T+RA QE+ +    I   + +    I+  +      +               
Sbjct: 77  SDILLLTFTRRAAQEMLARAAAICDSRCS---QIQGGTFHAFAHKLLRLHAS-------- 125

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                  + LA    +      +   D+   +               + LA +I     +
Sbjct: 126 ------QIGLAENFTVLDQADAEETLDIVRTALGFNKKE--KRFPKKRTLATVISTSRNK 177

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-- 220
           +   E +   +   +  +     +FL    + +      L+    +     L     E  
Sbjct: 178 QLPIELVVEAQYPHFLSFAEEI-EFLAKKYREYKRANALLDFDDLLTELRDLFLNFPELG 236

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
           H +  +   +++     +    A L++  +       V+   D       +     ++  
Sbjct: 237 HQISSSLRYVMVDEYQDTNLVQAELVAHFSAVHKN--VMAVGDDAQSIYAFRGANYRNIL 294

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
              +        Q+   KL+  L+        + +++N +  R+            +   
Sbjct: 295 DFPN--------QFPECKLIK-LEENYRSTPEILSLTNFVINRAKEKF--------TKTL 337

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNL 398
            +   E ++P         A++ A +ER +   IA  +    +E    ++ A++  +   
Sbjct: 338 FSRKPEGELP---------AIVSAPDERFQTRFIAQRILELREEGVPLREIAVLMRNGRD 388

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +  ++LEL +  I      G  +    H     + L  I+   D ++   +++
Sbjct: 389 SYALELELRKRNIPFVKFGGQKVVEAAHIKDFLAYLKLIYNPRDVISWNRVLQ 441


>gi|240127764|ref|ZP_04740425.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae SK-93-1035]
 gi|268686157|ref|ZP_06153019.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae
            SK-93-1035]
 gi|268626441|gb|EEZ58841.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae
            SK-93-1035]
          Length = 1200

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 92/892 (10%), Positives = 217/892 (24%), Gaps = 109/892 (12%)

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
            A +   ++       DL+AL+  +      L  D ++  +    E              +
Sbjct: 319  AAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSRRERGFDDLLL 378

Query: 213  ALMRAEAEHLMKGTKGPII--------IAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
             +  A  ++    T    +        I     + P    +   +        +    D 
Sbjct: 379  DVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF-IARNRPLFLVGDP 437

Query: 265  HIPTAIWNTIT---EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                  +              + +    T    S A L+  +       +R   + N  Y
Sbjct: 438  KQAIYSFRGADIYAYLQAAEDARHRYTLTTNYRSHAALIGSIGALFRLKERPFVLENIGY 497

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
                                   L     + +K   DV    A +    A  IA AL  +
Sbjct: 498  SEVGAARAESRLSPKRPAVQLRWL--HENDNEKANKDVLRRRAADYC--ADEIARALNEA 553

Query: 382  ----LDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                L+   +       A++    N A  +   L +  +   + +   +  +  ++ L++
Sbjct: 554  SGGRLNFKGRPLQSGDIAVLVRTHNEAVMISAALKKRQVQSVLLSRESVFASPEAAALSA 613

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            L+    +      +  ++   +  +   +               +         +     
Sbjct: 614  LIGFWLEPRRAGTLRFVLTSGIFGYDAQQL----------HDFNQNESEILHWAESARTA 663

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            LD          +  +      E + L+      +      L              ++  
Sbjct: 664  LDIWQKYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHK 723

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
            W +  ++   N   D           E  + L  + +     G         +       
Sbjct: 724  WLRDQISLAGNNGGDNRAIR-----LESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDT 778

Query: 613  IDGE--TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
               +   +     ++  L      ES    +    +      ++   T     L+  + +
Sbjct: 779  GPSDWQILHQGANRAELLAKAQLSESEQKQYADEEMAERLRLLYVALTRAEEQLN--IYA 836

Query: 671  DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
              +  TA+  +          +    +  T +  ++ I  +  R  +R+           
Sbjct: 837  AYSSDTADNPLAYLIEGLPQ-DSRETVRRTYACEKDGITMLK-RNWRRVADNAPAGTDFA 894

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ------LINDPYA 784
              +       +    D   +      P+            + S   Q          P  
Sbjct: 895  FTEDAPPPAAYRGNADQAAEFAANSIPERGFRFVRHTSFTALSRQTQTPDGGEEDACPSL 954

Query: 785  VYARRILKLDFIPHFKKD--------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
              A   +                   P  T  G   H I+ +    +  +   E   L+ 
Sbjct: 955  DAAETSVPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDF---KFGQAAAEQETLIA 1011

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFH--------------------------------KIS 864
              +  +  +E   P +  +                                      K  
Sbjct: 1012 DKLKKYGFEEIWLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRL 1071

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYK--- 919
              +L  ++     + +          ++   ++  L GF D +     G + I DYK   
Sbjct: 1072 RDWLARDDIRLPEVCRAAAE-----TLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNH 1126

Query: 920  ----TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
                T     +  A +    Q  + A A       +       ++ Y+ L+ 
Sbjct: 1127 LSAYTRQAMDEAVAHQHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|242315980|ref|ZP_04814996.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
            1106b]
 gi|242139219|gb|EES25621.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
            1106b]
          Length = 1328

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 84/881 (9%), Positives = 191/881 (21%), Gaps = 65/881 (7%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
              A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 244  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 296

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
             S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 297  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 356

Query: 163  EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
              +W          + +          A D     +  W   L EL+ S        L  
Sbjct: 357  RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 416

Query: 217  AEA------EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
            A A                + +       P    L+  ++   +  I            I
Sbjct: 417  ARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 476

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                  +S +               LA+       +   +  L   +          + +
Sbjct: 477  VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 535

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----K 386
                        D+              V +    +   +   +   L    D +     
Sbjct: 536  PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPCLAP 595

Query: 387  KKSALITADRNLARRVK-------LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                +   D   A  +               I   I+   P      + +L   L    +
Sbjct: 596  SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 655

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                  +   ++             + A  A   +     +     +             
Sbjct: 656  DVGAPELVEWLR-------------ADAVAARYGIDATALETVQTWLAASGARRGLAPDA 702

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                +      R +  D    + L   +     P+ T+     +  G   +         
Sbjct: 703  AEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTD 762

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC------------------IKAN 601
             L        R L    + +      + F       +                     A 
Sbjct: 763  DLDGFARRIARDLTPQGWGDVFADALARFFDSGPAVADALSGVRDALDAMLAAMAEGAAG 822

Query: 602  AIEWIDIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
            A     ++   +      P         +        R L +  + L G+++GV P    
Sbjct: 823  AALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLAR 882

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             + F    + + L  +           D  +A   R LI        +   +    L   
Sbjct: 883  ADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDE 942

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            L+                     R          +      P         S + + +L+
Sbjct: 943  LLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLL 1002

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
             +     AR           ++     D    + +    L++ R+     +    +    
Sbjct: 1003 AEGARAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVD-T 1061

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
            +           +      L  + + +         +    
Sbjct: 1062 EPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASP 1102


>gi|254493282|ref|ZP_05106453.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 1291]
 gi|293399482|ref|ZP_06643635.1| exodeoxyribonuclease V, beta subunit [Neisseria gonorrhoeae F62]
 gi|226512322|gb|EEH61667.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 1291]
 gi|291610051|gb|EFF39173.1| exodeoxyribonuclease V, beta subunit [Neisseria gonorrhoeae F62]
          Length = 1200

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 93/931 (9%), Positives = 220/931 (23%), Gaps = 113/931 (12%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
            +L  L      +L  +  D             A      + LAD         +    L 
Sbjct: 287  QLPCLDKDTHERLLKLSSDKLEAGLKKGKTPDAAVFAELQKLADF-------GRDLNALE 339

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKG 225
              +        L   ++L  +     +   E      +      +            +  
Sbjct: 340  EAEETTMIRLQLDLIEYLNSSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETPARAVAE 399

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
                 +I     + P    +   +        +    D       +      +    + +
Sbjct: 400  NWEIALIDEFQDTDPLQYEIFQKIF-IARNRPLFLVGDPKQAIYSFRGADIYAYLQAAED 458

Query: 286  TTYSTHPQ---YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
              +         S A L+  +       +R   + N  Y                     
Sbjct: 459  ARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQL 518

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS----LDENKKK-----SALIT 393
              L     + +K   DV    A +    A  IA AL  +    L+   +       A++ 
Sbjct: 519  RWL--HENDNEKANKDVLRRRAADYC--ADEIARALNEASGGRLNFKGRPLQSGDIAVLV 574

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
               N A  +   L +  +   + +   +  +  ++ L++L+    +      +  ++   
Sbjct: 575  RTHNEAVMISAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSG 634

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            +  +   +               +         +     LD          +  +     
Sbjct: 635  IFGYDAQQL----------HDFNQNESEILHWAESARTALDIWQKYGIFAAMQQFSQTHG 684

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
             E + L+      +      L              ++  W +  ++   N   D      
Sbjct: 685  IETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNGGDNRAIR- 743

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--TVKPKIEKSSTLFIL 631
                 E  + L  + +     G         +          +   +     ++  L   
Sbjct: 744  ----LESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAELLAKA 799

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               ES    +    +      ++   T     L+  + +  +  TA+  +          
Sbjct: 800  QLSESEQKQYADEEMAERLRLLYVALTRAEEQLN--IYAAYSSDTADNPLAYLIEGLPQ- 856

Query: 692  NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            +    +  T +  ++ I  +  R  +R+             +       +    D   + 
Sbjct: 857  DSRETVRRTYACEKDGITMLK-RNWRRVADNAPAGTDFAFTEDAPPPAAYRGNADQAAEF 915

Query: 752  PHYKRPKPFPPLEAQPRTYSFSEIKQ------LINDPYAVYARRILKLDFIPHFKKD--- 802
                 P+            + S   Q          P    A   +              
Sbjct: 916  AANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPSETPTASDGI 975

Query: 803  -----PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                 P  T  G   H I+ +    +  +   E   L+   +  +  +E   P +  +  
Sbjct: 976  SIHDFPKGTQAGLCLHEILEDF---KFGQAAAEQETLIADKLKKYGFEEIWLPAVAEMAE 1032

Query: 858  HLFH--------------------------------KISHSFLEHEEKIQSSIEKIFVNI 885
                                                K    +L  ++     + +     
Sbjct: 1033 ACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRLPEVCRAAAE- 1091

Query: 886  PAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYK-------TGDNPKKETAQKLIDPQ 936
                 ++   ++  L GF D +     G + I DYK       T     +  A +    Q
Sbjct: 1092 ----TLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQHYYLQ 1147

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
              + A A       +       ++ Y+ L+ 
Sbjct: 1148 ALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|294012022|ref|YP_003545482.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S]
 gi|292675352|dbj|BAI96870.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S]
          Length = 1134

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 87/923 (9%), Positives = 225/923 (24%), Gaps = 134/923 (14%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +   + +  A + G L E              + +   + +A  E+           +
Sbjct: 218  PGTGKTQTL-TARVEGLLAEGVDPR--------RILLLTFSNKAAGEMAERIGRKHKVAA 268

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
              +  I +      +       +   L      + R   +  L   +     +  ++L  
Sbjct: 269  AAM-WIGTFHAFGLDIIR-RFHIELGLPKDPRMMDRTEAVELLEAEFPRLGLNHYRNL-- 324

Query: 133  ESPLSLPISPANAIWLAKN-------LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
              P  +      AI  AK+        A++ + +       ED  A +  +       A 
Sbjct: 325  YDPTQIIADMLAAISRAKDEVVNEVRYAELAEAMFVSAVTPEDREAAERAEEVARVYAAY 384

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            + LK          V+      +  ++     E    ++     +++        ++ RL
Sbjct: 385  EGLKR-----QAHCVDFGDLVSMPVRLLEGNLEIRAHLQAQYDHVLVDEYQDVNRSSVRL 439

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            ++ + +  +G  +    D       +   +  +     ++  +    +  L +     D 
Sbjct: 440  ITALRS--DGRNLWVVGDAKQSIYRFRGASSFNMTRFGTSD-FPGGARGRLKRNYRSADE 496

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
              +               S + S+                             +  ++  
Sbjct: 497  VVQAFSAFAIRMKAGDQDSGLESERGR--------------------CGASPQLRTVDQS 536

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
             ++  A++ AI          +  A++         +  +L R G+ +       L    
Sbjct: 537  PQQTVALADAIEEMRQAGHTYRDQAVLCTGNEKLSELGQDLERLGVPVLFLG--SLFERP 594

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                L SLL  +        +        A        L     A++ +          I
Sbjct: 595  EIKELLSLLTILTDRRAMGLVRAACMSEFAMPLSDVDALFDHLRAVDSIPGAWLGELGGI 654

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              L                                             L           
Sbjct: 655  TGLSETGSV--------------------------------------ALGAVAAAMRGFD 676

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
             + S        +     +                G  +    + +           +  
Sbjct: 677  QSASPWTVLATLLLDRTRITARIGGSNDIAERTR-GLAIWQFMNFLRVQPGGQGLPIVRL 735

Query: 606  IDIITRLIDG------ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
            +D + RL+          +    +    + ++    ++ L F  + + GLN    P+   
Sbjct: 736  LDRVRRLVRLGDDRDLRQLPAAAQGLDAVRLMTIHGAKGLEFPVVHVPGLNGDTIPRTPQ 795

Query: 660  K------NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS--LRENNIPTI 711
                   +  +       L++  A     Q    +   +  R  ++  +   + N     
Sbjct: 796  APPCPPPDGMVEGAEGRALDVFRAGHAEEQECLFYVALSRARDRLFLYAPTQKSNGHNRP 855

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
             S +L R+                        K++     P          +      ++
Sbjct: 856  LSSFLDRVGSGLART-----------------KVNPAKTLPPAPEAGDVTLVVDGALRFT 898

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK-RINKNTPE 830
             ++I      P   +   +L++                   H  +  + +    +     
Sbjct: 899  GAQIALYERCPRRFFYTHVLQVGGRRTATAFMQ-------MHEAVRTVFQTVIADARIIG 951

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                +++ I + F    L  H  +         + S +++    +          PA ++
Sbjct: 952  GEGDLERQIANAFAAHGLADHGYVSEY---KGFATSMIQYFLAAREGHTP---EAPAALS 1005

Query: 891  IESIGIHLTGFADRIDLLKSGFV 913
            I      +    D + +   G  
Sbjct: 1006 IAFGTEEIIVRPDEVLVQSDGSR 1028


>gi|239998560|ref|ZP_04718484.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae 35/02]
 gi|240013685|ref|ZP_04720598.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae DGI18]
 gi|240120754|ref|ZP_04733716.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID24-1]
 gi|268594420|ref|ZP_06128587.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 35/02]
 gi|268547809|gb|EEZ43227.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 35/02]
 gi|317163836|gb|ADV07377.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 1200

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 83/889 (9%), Positives = 215/889 (24%), Gaps = 103/889 (11%)

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
            A +   ++       DL+AL+  +      L  D ++  +    E              +
Sbjct: 319  AAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSRRERGFDDLLL 378

Query: 213  ALMRAEAEHLMKGTKGPII--------IAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
             +  A  ++    T    +        I     + P    +   +        +    D 
Sbjct: 379  DVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF-IARNRPLFLVGDP 437

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                  +         + ++      +   +  +    L      + RL      +    
Sbjct: 438  KQAIYSFRGADIY-AYLQAAEDARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIG 496

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS--- 381
                 +         +   +    +       ++  ++        A  IA AL  +   
Sbjct: 497  YSEVGAARAESRLSPKRPAVQLRWLHENDNEKANKDVLRRRAADYCADEIARALNEASGG 556

Query: 382  -LDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
             L+   +       A++    N A  +   L +  +   + +   +  +  ++ L++L+ 
Sbjct: 557  RLNFKGRPLQSGDIAVLVRTHNEAVMISAALKKRQVQSVLLSRESVFASPEAAALSALIG 616

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
               +      +  ++   +  +   +               +         +     LD 
Sbjct: 617  FWLEPRRAGTLRFVLTSGIFGYDAQQL----------HDFNQNESEILHWAESARTALDI 666

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                     +  +      E + L+      +      L              ++  W +
Sbjct: 667  WQKYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLR 726

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
              ++   N   D           E  + L  + +     G         +          
Sbjct: 727  DQISLAGNNGGDNRAIR-----LESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPS 781

Query: 616  E--TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            +   +     ++  L      ES    +    +      ++   T     L+  + +  +
Sbjct: 782  DWQILHQGANRAELLAKAQLSESEQKQYADEEMAERLRLLYVALTRAEEQLN--IYAAYS 839

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
              TA+  +          +    +  T +  ++ I  +  R  +R+             +
Sbjct: 840  SDTADNPLAYLIEGLPQ-DSRETVRRTYACEKDGITMLK-RNWRRVADNAPAGTDFAFTE 897

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ------LINDPYAVYA 787
                   +    D   +      P+            + S   Q          P    A
Sbjct: 898  DAPPPAAYRGNADQAAEFAANSIPERGFRFVRHTSFTALSRQTQTPDGGEEDACPSLDAA 957

Query: 788  RRILKLDFIPHFKKD--------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
               +                   P  T  G   H I+ +    +  +   E   L+   +
Sbjct: 958  ETSVPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDF---KFGQAAAEQETLIADKL 1014

Query: 840  DSHFEKENLPPHIDIIWRHLFH--------------------------------KISHSF 867
              +  +E   P +  +                                      K    +
Sbjct: 1015 KKYGFEEIWLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDW 1074

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYK------ 919
            L  ++     + +          ++   ++  L GF D +     G + I DYK      
Sbjct: 1075 LARDDIRLPEVCRAAAE-----TLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSA 1129

Query: 920  -TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
             T     +  A +    Q  + A A       +       ++ Y+ L+ 
Sbjct: 1130 YTRQAMDEAVAHQHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|212716229|ref|ZP_03324357.1| hypothetical protein BIFCAT_01145 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660741|gb|EEB21316.1| hypothetical protein BIFCAT_01145 [Bifidobacterium catenulatum DSM
           16992]
          Length = 1398

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/496 (10%), Positives = 123/496 (24%), Gaps = 61/496 (12%)

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAI--VLPGLDCHIPTAIWNTITEKSTNITS 283
               +++     +    A L+S + +  +     V    D       W   +  +  +  
Sbjct: 305 RYSHVLLDEYQDTSTTQAALLSALFHADDTHRSAVNAVGDPFQSIYAWRGASPGAFRMLQ 364

Query: 284 SNTT-YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            +    +T   ++L        +  E    L      +  R +  S        +     
Sbjct: 365 HDFGMDATRKPFALTVTRRNSRMVLEAANNLTKPLR-LPARRLSSSLMREVDVPALSNIE 423

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISI----AIALRMSLDENKKKSALITADRNL 398
           +  E  I  +        +       + AI++    A  L      N+   A++   +  
Sbjct: 424 EAPEGTIGVLGFATFGQEVDAVVRFAKHAIALHTPSARDLDHGAKNNRPHVAVLFRSKGT 483

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
             +    L + G+   +     L        + +LL+ +    D  A+  L+  P     
Sbjct: 484 MSKYAEALEQAGLTTLVVGQAALLERPEVRDVFALLHVVSDHTDSAALMRLLATPRFAVE 543

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSL--------------------------- 491
             +               R        +                                
Sbjct: 544 ADDLQALADTAERVNTVYRYRALVSAGIVPAQTTKAGNSGDSINSGDSRKTSNSENSETI 603

Query: 492 -------VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                     R   ++    VP+    +    ++    L+D  L         +      
Sbjct: 604 SDSGLSNAEIRSIVREYRDQVPNAVFLVDLMLRDDLEQLIDGRLSRRGAQAVLRAADTLR 663

Query: 545 CGNL----SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                    + +  +  +T L         +       E     S +        + +K 
Sbjct: 664 QVQRVLGHPLPEVVREAITALNLDIDMLLARHMRADHAEAMLDASHVALAKSPIDAVMKL 723

Query: 601 NAIEWIDIITRLIDGETVKPKIEKS---------------STLFILGTLESRLLNFDTLI 645
                 +I ++ +           S                 + ++   +S+ L +D + 
Sbjct: 724 VDTYMQEIASQGLPSLRAFISWVDSLRDASEENAVAPDVPVDVVLMTVHQSKGLEWDAVA 783

Query: 646 LGGLNEGVWPKNTAKN 661
           + G+ +G +P N   N
Sbjct: 784 VVGMTDGGFPSNKGDN 799



 Score = 56.5 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 47/139 (33%), Gaps = 14/139 (10%)

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI------DLLKSGFVDI 915
             +            +  +  +      + +  +G  + G  D +      +  +S    I
Sbjct: 1257 ALFDWQQRLATSAWAQRKPAWAERQIVVNMPQLGTIINGKLDAVFFGGLNEKDQSKQYTI 1316

Query: 916  TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
             D+KTG  P+K+   +    QL +    L   +   +    +    Y         + + 
Sbjct: 1317 VDWKTGKKPRKKEEIQEKLVQLDMYRLLL--SAMEGVPLDAIDACLYY------LSEPVE 1368

Query: 976  NDKKKYSADELSEKSLKNL 994
             +++  +AD+  E+ L  L
Sbjct: 1369 GNRQLNAADKTEEEILAEL 1387


>gi|111018835|ref|YP_701807.1| exodeoxyribonuclease V gamma subunit [Rhodococcus jostii RHA1]
 gi|110818365|gb|ABG93649.1| exodeoxyribonuclease V gamma subunit [Rhodococcus jostii RHA1]
          Length = 1086

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 95/890 (10%), Positives = 228/890 (25%), Gaps = 77/890 (8%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV- 84
           L   L +       +P   A   + VP K   + L        G +  +   + +  D  
Sbjct: 13  LASALGDVLATPLSDP--FAREVVAVPAKGVERWLTQRLSTALGARPGVGDGVAANIDFP 70

Query: 85  ----VEEKFTADLLLSYNLNPPVSNIQRLLELARLIL-----IWRNKLPDIIKDLYPESP 135
               + ++  A        + P +  + L  L  ++       W   L   +    P+  
Sbjct: 71  SPTRLVDECLAAATGVSADDDPWNPSRVLWALLGVVDDCLSEPWCAVLAKHLGHGLPDRD 130

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194
                 P      A +L D+      +      L                 D L   ++ 
Sbjct: 131 PDDHR-PGRRYATASHLTDLFRSYAAQR--PAMLVDWAGGRDTDGAGGPLDDDLLWQAEL 187

Query: 195 WTERLVELNASSPVGYQIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
           W     ++ + +P     +   R  AE  +      + + G T        +++ +A + 
Sbjct: 188 WRRLREKIGSPAPAERLDSACARLRAEPDLVELPARLSLFGPTRLATDQIAVLAALAVNR 247

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
           +  + LP     + +++    +  +     +  + +     SLA+ +  L+ +   +   
Sbjct: 248 DVHLWLPHPSPTMWSSLSTADSVLARADDPTALSVAHPLLSSLARDVRELESRLTRLDVD 307

Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
                    R  ++                             + V +        +   
Sbjct: 308 DLHHEGPAPRDSLLGCLQADV--------RDDRAPALAECTADTSVQVHACHGPARQVEV 359

Query: 374 IAIALRMSLDENK----KKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLS 422
           +   L    +++     +   ++  D      +                     A   L 
Sbjct: 360 LRECLLHLFEDDPTLEPRDVLVMCPDVESYAPLIRAAFGQDVLGHPGHRLRVRLADRALH 419

Query: 423 TTLHS-SILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477
            T    +++++LL           +  L          +FG  +    R           
Sbjct: 420 QTNPVLAVVSTLLELADARVTASQVLDLSAAAPVRRRFRFGDDDLERIREWATATGARWG 479

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL-------VDHILQC 530
                     L     +   T  +   +         E   LA+ L       +D   + 
Sbjct: 480 IGPRQRAAFGLGDFPQNTFTTALDRILLGAAADESDGEWLALALPLDDVDSNDIDLTGRL 539

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
              +           G  S++DW+      L  +          L               
Sbjct: 540 AEFVDRLDVALRGLGGPQSVADWSSALTRALDLLVDVSAADTWQL------AQARRELGS 593

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +E G        +   ++   + G   +        L +   +  R +    ++L GL+
Sbjct: 594 AMEHGGDAVLRLSDVRAMLATRLAGRPTRANFRTGE-LTVCTMVPMRSVPHRVVVLLGLD 652

Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
           + V+P+  + +          L  +       Q   D  M+   + L++          +
Sbjct: 653 DEVFPRGVSVDGDDVLARNPLLGERDPRSEDRQLLLDAVMSASEKLLLFYTGADPVTGMS 712

Query: 711 IA-----SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                  S  L  +    G+D    +  R            +  +    +  +P  P   
Sbjct: 713 RPPAIPLSELLDAVAATVGSDALPGIVTR------------HPLQPFDARNFRPEHPFSF 760

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
                + +   Q   +P   +    L    +              L H      +++R+ 
Sbjct: 761 DRAALAGARAAQHPPEPEPAFLPAPLVPPPLGDVDL---ADLIAFLVHPT-QAFLRQRLG 816

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI-SHSFLEHEEKI 874
              P+++  +   ++   +          +       +    F   E + 
Sbjct: 817 LRVPDVDEDLADALEVSPDPLARWDLGQRMLVARLTGVELADFRAAEWRR 866


>gi|302870989|ref|YP_003839625.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47]
 gi|302573848|gb|ADL41639.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47]
          Length = 955

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 76/245 (31%), Gaps = 43/245 (17%)

Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF----KKDPDRTDRGTLFHNI 815
               E + +  S S I      P     + I+ L          +   +    GT  H +
Sbjct: 698 PDEFENRFKFLSPSHIMDFKRCPAMFSLKYIMGLPVFDELSSKEEIQQNAKVLGTTVHRV 757

Query: 816 IT-ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
           +    +K   + +T     +++   +S                 +  ++  +F E +   
Sbjct: 758 LELTSLKDIKSLDTNIALAVLENDFESE---------------KIVRELILNFFESQFVK 802

Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
           +   + I      +   +     + G  D++  L+   + + D+KT             D
Sbjct: 803 EIKDKVIKEESEIRFYFKLGNQMIYGIIDKVYHLED-KIFLVDFKTN---------LHFD 852

Query: 935 --------PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
                   PQL +   A+K     +   + + +  +  L++  K D    ++      ++
Sbjct: 853 DTKFNIYIPQLFIYTMAMK----ERFPQKNIFSSIFW-LREGRKFDYELKEEHLEDVMDV 907

Query: 987 SEKSL 991
             +  
Sbjct: 908 IRRIR 912


>gi|170782918|ref|YP_001711252.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157488|emb|CAQ02679.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 815

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 92/801 (11%), Positives = 185/801 (23%), Gaps = 132/801 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-- 102
           + +     T +A  E+R     + G+ S  +  I +           +            
Sbjct: 83  SQILAITFTNKAAAEMRERVESLLGQASEGM-WISTFHSACVRILRREAEAFGFTQNFTI 141

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
             +    + + R+I                     L    ++A   A+  A+  D     
Sbjct: 142 YDSADSRVLIKRIIKQLDADTLGFTVSSVSGRISKLKNELSDADTFART-ANFND----- 195

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA---LMRAEA 219
                                A        + +T  L   NA            L RA  
Sbjct: 196 --------------------PAEAMFVEIFRQYTRSLAAANAFDFDDLIGQTVYLFRAFP 235

Query: 220 --EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP-------------------NGAIV 258
               L +     +++     +  A   L+  +                       +GA +
Sbjct: 236 KVAALYQRRFRHVLVDEYQDTNHAQYSLIRELTRAVAPEDVPVDTRMSTNGMGGIDGASL 295

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               D       +     ++      +      PQ  +  L       +  +     V +
Sbjct: 296 TVVGDSDQSIYAFRGADIRNITEFERDF-----PQSKVVLLEQNYRSTQNILTAANAVIS 350

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
             + R                      + K+         +      +  +EA  +A  +
Sbjct: 351 NNFDRK---------------------DKKLWTSIGDGDKIVGFTGYSGHDEAQFVADEI 389

Query: 379 RMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           +   +E     + A+        R ++  L R  +   I  G             + L A
Sbjct: 390 QKLHEEGTAYSEIAVFYRTNAQTRALEEILIRSAVPYRIMGGTKFYERAEIKDAMAYLVA 449

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           +    D +A+  ++  P    G   +           V  R        + L   V   I
Sbjct: 450 VANPADVLALRRILNTPKRGIGPATETALANFAESHGVTFREAMRRASELGLGPKVTQAI 509

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
            T                E  E    + D +   +                   S   + 
Sbjct: 510 LTLSRMLDEVALLL--DPERPEGRTSVSDLVTTLLKR-----------------SGLVQA 550

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                     DE R           K  S    +        + + +   D +       
Sbjct: 551 LRASKD--AQDEARAENVEELVAVTKEFSRNNPEGQLVDFLTEVSLVAAADELDD----- 603

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
                   + T+ ++    ++ L +D++ L G+ E         +    R+  ++     
Sbjct: 604 -------SNGTVSLMTLHTAKGLEYDSVFLTGVEE---------DLLPHRMSANEPGGPA 647

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--DFFDNLKKR 734
            E+ +               L  TR+        + SR+LQ +                R
Sbjct: 648 EERRLFYVGITRARRRLFISLAMTRAQFGEVNVAMPSRYLQEIPAELIDWKQSPGMATSR 707

Query: 735 GQCYLDWTRKLDYTTKQPHY-------KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
           G                          + P   PP        + +   +   D    + 
Sbjct: 708 GGTQPRALNARREGGGYGGRSRSSSGFEDPALPPPRPKTQWANTVTGQVRDNGDLELAFG 767

Query: 788 RRILKLDFIPHFKKDPDRTDR 808
            RI   DF            R
Sbjct: 768 DRIRHTDFGDGRVTGVAGEGR 788


>gi|194098105|ref|YP_002001153.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae NCCP11945]
 gi|193933395|gb|ACF29219.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae NCCP11945]
          Length = 1200

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 83/889 (9%), Positives = 215/889 (24%), Gaps = 103/889 (11%)

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
            A +   ++       DL+AL+  +      L  D ++  +    E              +
Sbjct: 319  AAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSRRERGFDDLLL 378

Query: 213  ALMRAEAEHLMKGTKGPII--------IAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
             +  A  ++    T    +        I     + P    +   +        +    D 
Sbjct: 379  DVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF-IARNRPLFLVGDP 437

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                  +         + ++      +   +  +    L      + RL      +    
Sbjct: 438  KQAIYSFRGADIY-AYLQAAEDARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIG 496

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS--- 381
                 +         +   +    +       ++  ++        A  IA AL  +   
Sbjct: 497  YSEVGAARAESRLSPKRPAVQLRWLHENDNEKANKDVLRRRAADYCADEIAHALNEASGG 556

Query: 382  -LDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
             L+   +       A++    N A  +   L +  +   + +   +  +  ++ L++L+ 
Sbjct: 557  RLNFKGRPLQSGDIAVLVRTHNEAVMISAALKKRQVQSVLLSRESVFASPEAAALSALIG 616

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
               +      +  ++   +  +   +               +         +     LD 
Sbjct: 617  FWLEPRRAGTLRFVLTSGIFGYDAQQL----------HDFNQNESEILHWAESARTALDI 666

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                     +  +      E + L+      +      L              ++  W +
Sbjct: 667  WQKYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLR 726

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
              ++   N   D           E  + L  + +     G         +          
Sbjct: 727  DQISLAGNNGGDNRAIR-----LESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPS 781

Query: 616  E--TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            +   +     ++  L      ES    +    +      ++   T     L+  + +  +
Sbjct: 782  DWQILHQGANRAELLAKAQLSESEQKQYADEEMAERLRLLYVALTRAEEQLN--IYAAYS 839

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
              TA+  +          +    +  T +  ++ I  +  R  +R+             +
Sbjct: 840  SDTADNPLAYLIEGLPQ-DSRETVRRTYACEKDGITMLK-RNWRRVADNAPAGTDFAFTE 897

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ------LINDPYAVYA 787
                   +    D   +      P+            + S   Q          P    A
Sbjct: 898  DAPPPAAYRGNADQAAEFAANSIPERGFRFVRHTSFTALSRQTQTPDGGEEDACPSLDAA 957

Query: 788  RRILKLDFIPHFKKD--------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
               +                   P  T  G   H I+ +    +  +   E   L+   +
Sbjct: 958  ETSVPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDF---KFGQAAAEQETLIADKL 1014

Query: 840  DSHFEKENLPPHIDIIWRHLFH--------------------------------KISHSF 867
              +  +E   P +  +                                      K    +
Sbjct: 1015 KKYGFEEIWLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDW 1074

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYK------ 919
            L  ++     + +          ++   ++  L GF D +     G + I DYK      
Sbjct: 1075 LARDDIRLPEVCRAAAE-----TLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSA 1129

Query: 920  -TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
             T     +  A +    Q  + A A       +       ++ Y+ L+ 
Sbjct: 1130 YTRQAMDEAVAHQHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|237811672|ref|YP_002896123.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           MSHR346]
 gi|237504958|gb|ACQ97276.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           MSHR346]
          Length = 1114

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 83/881 (9%), Positives = 189/881 (21%), Gaps = 65/881 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W          + +          A D     +  W   L EL+ S        L  
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 217 AEA------EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
           A A                + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--- 387
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLAP 381

Query: 388 --------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                     A      +             I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                 +   ++             + A  A   +     +     +             
Sbjct: 442 DVGAPELVEWLR-------------ADAVAARYGIDATALETVQTWLAASGARRGLAPDA 488

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               +      R +  D    + L   +     P+ T+     +  G   +         
Sbjct: 489 AEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTD 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC------------------IKAN 601
            L        R L    + +      + F       +                     A 
Sbjct: 549 DLDGFARRIARDLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAG 608

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           A     ++   +      P         +        R L +  + L G+++GV P    
Sbjct: 609 AALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLAR 668

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            + F    + + L  +           D  +A   R LI        +   +    L   
Sbjct: 669 ADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDE 728

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
           L+                     R          +      P         S + + +L+
Sbjct: 729 LLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFVPGGALFTYDASRATLARLL 788

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
            +     AR           ++     D    + +    L++ R+     +    +    
Sbjct: 789 AEGARAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVD-T 847

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
           +           +      L  + + +         +    
Sbjct: 848 EPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASP 888


>gi|296117285|ref|ZP_06835876.1| double-strand break repair helicase AddA [Gluconacetobacter hansenii
            ATCC 23769]
 gi|295976178|gb|EFG82965.1| double-strand break repair helicase AddA [Gluconacetobacter hansenii
            ATCC 23769]
          Length = 1208

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 83/807 (10%), Positives = 179/807 (22%), Gaps = 94/807 (11%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
                + L+     W    ++            +     E                G+   
Sbjct: 412  ERTLELLRDPGAAWVLYKLDGGIDH--LLLDEVQDTSPEQWAIAGGLTAEFFAGEGTREH 469

Query: 242  TA--RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
                R +  V ++        G D             K+ N  +     +    +     
Sbjct: 470  DGLPRTVFAVGDYKQSIYSFQGADPEAFRRWREHFRRKARNAQARWREPALTVSFRSTTP 529

Query: 300  LDFL--------DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
            +  L           R   +    +   +  R     +  L P T    +    +     
Sbjct: 530  VLALVDRVFSIPAAARGVAEPDSGIPAHVTARPGGGGRVELWPITPGGDDATQADPWDAP 589

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDE------NKKKSALITADRNLARRVKLE 405
             +      A  +  +    A  IA  LR +               L+      AR +   
Sbjct: 590  TRNAGQSTAQQQLAD--TLAAWIAGELRRAPAPGQAPLAPGDVLILVPRRSAFARALIRA 647

Query: 406  LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
            L    + +       L+  L    L +L  A+    D + +A ++  PL           
Sbjct: 648  LKTQDVPVATLVRTVLTDQLAVRDLMALCAALLLPQDDLTLACVLTSPLGGLDDDSLMHL 707

Query: 466  RAKNALE--LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                        LR              +LD +  + +        S         A LL
Sbjct: 708  STARQGRPLWAVLRARHGERPEWAAAWRMLDTLFGKVDYASPYALLSEALGPLGGRARLL 767

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                 + + P+    +         ++S                   +    W     +T
Sbjct: 768  ARLGPEAVEPVDELLSAALRFEEAHAVS------------------LQGFLHWLHASEET 809

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            +        +    + A+  + +     ++                +        L +  
Sbjct: 810  VKHEPDAAADMVRVMTAHGAKGLQARLVILPDT-------------VGTPRFDSGLLWVH 856

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
                GL+  +W         +++ +Q  L L  AE+Y          A  +  L+     
Sbjct: 857  DAQSGLDLPLWVPRRELGTGVTQALQDRLKLAAAEEYNRLLYVALTRA--SERLVVCGWE 914

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
                +P  +   L R   +      +         +    +            P   P  
Sbjct: 915  PRRGVPENSWYDLCRQAFVAQDARAEPFALGWPGDVLVIEEAYAPRSVAPPSPPVSRPDA 974

Query: 764  EAQPR--------------------TYSFSEIKQLINDPYAVYARR----ILKLDFIPHF 799
                                       + S    +   P              +      
Sbjct: 975  PPPHWMGTAPDWIPVPPVVEGPLARPLAPSRPDDVALGPQPAVRSPLEIARAGMGGQSAG 1034

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
             +  +   RG + H ++  L      +        + +              +       
Sbjct: 1035 TRRMNALRRGQMVHALLQYLPDCVPAERAQVARRWLSRRG----------SGLSTADCAR 1084

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
                  + +E    +           P    +    +      DR+ +     V + D+K
Sbjct: 1085 IADQVMAVMETPAMVPLFASNSRAEQPLAGVVGDTVVVGQ--VDRMAVTDD-EVLLCDFK 1141

Query: 920  TGDNPKKETAQKL--IDPQLSLEAAAL 944
            T   P     +       Q++   A L
Sbjct: 1142 TNRQPPARVEETPVLYLRQMASYRALL 1168


>gi|225351771|ref|ZP_03742794.1| hypothetical protein BIFPSEUDO_03368 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158115|gb|EEG71398.1| hypothetical protein BIFPSEUDO_03368 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 1390

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 70/761 (9%), Positives = 183/761 (24%), Gaps = 61/761 (8%)

Query: 58  QELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL 117
           + +R        +  T LP +                    L   ++  ++ + + +++ 
Sbjct: 57  RAIRELSAVSQARPVTTLPAV-----AFRLLTAVRSSQGEPLPKLLNGAEQDVIIRKVLA 111

Query: 118 IWRN--------KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
                          D+++  +  S  S  ++  +    A  L D++  +     K +  
Sbjct: 112 SHVEHRQHGDDCATCDLLRTYFAVSEWSGLVADDSTDAFANQLRDMLARMNEIGAKPQFE 171

Query: 170 HALK-------------NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             L               E+    W LA    +  ++                  I    
Sbjct: 172 DMLIARAASRDGMLDERRERLRTQWRLAFALREEYNEAIRSSYPGEYRLDASQLMIDATE 231

Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC-------HIPTA 269
           A +          +I+     +  A   L+  +       +++   D          P  
Sbjct: 232 AVSGIQEADIANMLIVDDFQDTTLAGFALLEALHERGVRLLLVGNPDEAVQTFRGSYPEY 291

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
           ++N    +            T  +   A+ +        D + L      +   S   + 
Sbjct: 292 LFNQAQTRMGARLERIEGLQTAHEGDTAQTVSNQQGVHGDYRTLVATRVSLSIASTESTD 351

Query: 330 SFLPPDTSD--------MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
             LP                T   ++    +      V      +  EE   +   ++  
Sbjct: 352 VPLPDRPGKMSDMPGAMPIETLPADDTGARVTPADGSVETALYRSSSEELDDVVWKIKTE 411

Query: 382 LDENKK---KSALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLHSSILTSLLNAI 437
             +  +     A+I  D    R     L   G+ +  S+   PL        L +L+   
Sbjct: 412 HLQRSRVWNDMAVIAHDNATVRAFGERLRADGVPVRYSSVTRPLKDEPFVQGLFALIELA 471

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
              N  +A +T+       +               L+ + G++         + +   + 
Sbjct: 472 ELKNQTIAASTMDLQTAGSYIRSRV---ALIMGSPLITVGGDQRHEGRPARLASIESAMN 528

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              +   +   ++   +ED        D            +   ++     ++       
Sbjct: 529 ALVSLASIVESKAANHDEDAAEEYDEDDFEDYFEDDFEDDEDAADAAVEQQAL---LPRL 585

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
           +   ++   D H    +   +              E       +      ++        
Sbjct: 586 MEDWRDYMTDYHAIRADGEHDS---------EHEDEHEGDFALSMEALYVLLMEGNTDRV 636

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
           V            +    S     D                  +       ++++  + A
Sbjct: 637 VDAIASVLGADPQIKAFASLWKVLDKTCESEAKLVSREPQYVLDCAWRACGKAEVWQRVA 696

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
            ++        +  +    L +  +    +    A   ++  +        +        
Sbjct: 697 LEHSAAGRAANDRLDAAMRL-FNYASGGESSGEFAVHTIEAFIEQVRLLTIEADSLAHTA 755

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            +D    L         +    F P   Q +  + +    L
Sbjct: 756 PIDQAVTLTTPAGAAGKRWNLVFLPALQQGQWPNLTPRNTL 796



 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 63/606 (10%), Positives = 144/606 (23%), Gaps = 102/606 (16%)

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR--GNKNSYDI 485
             ++ ++ + +       A A+L K          K +SR    +   A R  G    +  
Sbjct: 635  RVVDAIASVLGADPQIKAFASLWKVLDKTCESEAKLVSREPQYVLDCAWRACGKAEVWQR 694

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL-----AVLLVDHILQC---ITPLVTY 537
            + L+     R A  + +  +  +      E             ++ +         L   
Sbjct: 695  VALEHSAAGRAANDRLDAAMRLFNYASGGESSGEFAVHTIEAFIEQVRLLTIEADSLAHT 754

Query: 538  KTNKNSTCGNLSISDWTKLT-VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                 +           K   +  L  +   +   L        G+ L+ +    + + +
Sbjct: 755  APIDQAVTLTTPAGAAGKRWNLVFLPALQQGQWPNLTPRNTLFGGEELADVMLHGVLSDT 814

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             +     +   + + L   +         ++  ++ +      N  +  L G        
Sbjct: 815  IVTPAGRQDAQLASVLASEQKSLLVALTRASERVVVSAVLNDDNVPSDFLYG--YMPECF 872

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
            +  ++  + R   + +       Y G       +    R ++ +           A    
Sbjct: 873  DRDRDADMERREYASVG--GQGDYAGLETDPRGLVAAARSVLASEPEDSPKARDAAEALA 930

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT------Y 770
                        D     G+      RK+    +       +                  
Sbjct: 931  LLASHGVTAADPDRWPFMGETVEATMRKIAAVMRTGMSDTSESSTSGRNGKSRRSDVVTL 990

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S S +  L   P                 +     T  G+L H +  +  +  ++     
Sbjct: 991  SPSAVDNLWACPVCWMLENR-----FSGPRMGSVATSFGSLIHKVAQQATEAGLDMPEHH 1045

Query: 831  IN----HLMKQIIDSHFEK---------ENLPPHID-------IIWRHLFHKISHSFLEH 870
                    +  I +  + +             P             +     I+  F++ 
Sbjct: 1046 TAISDVDNINAITEWMYAEYKRLCGDFNAIADPAQRYQALKKDEQAQEALRNIATYFVQS 1105

Query: 871  ----------EEKIQSSIEKIFVNIPAKMAIES--------------------------- 893
                      +      + K    +      +                            
Sbjct: 1106 NHGDYPIKNNDAFSVGKLTKAEPELKFTAKFDFDDILDAYNAMDGVHAISRNELIAIMGA 1165

Query: 894  -------------IGIHLTGFADRIDLLK--SGF--VDITDYKTGDNPKKETAQKLIDPQ 936
                         + + LTG  DR++  +   G   V + DYKTG +P  E      D Q
Sbjct: 1166 LVGGWPETGMSEYLTVRLTGRIDRLERREMADGTQQVRLIDYKTGVSPTGEGLFN--DLQ 1223

Query: 937  LSLEAA 942
            L     
Sbjct: 1224 LVCYQL 1229


>gi|67459079|ref|YP_246703.1| DNA helicase II [Rickettsia felis URRWXCal2]
 gi|75536488|sp|Q4ULN5|UVRD_RICFE RecName: Full=Probable DNA helicase II homolog
 gi|67004612|gb|AAY61538.1| DNA helicase II [Rickettsia felis URRWXCal2]
          Length = 654

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/581 (9%), Positives = 153/581 (26%), Gaps = 102/581 (17%)

Query: 155 IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
           II   + +      L A       +     A       + + + L+  N        +  
Sbjct: 146 IISRWKDQGLLPSKLSA---SDTNLPLQRVAKL---VYEEYQKNLLISNVLDFGDLLLYN 199

Query: 215 MRAEAEHLMKGTK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
                ++             I+I     +          +A+       +   D      
Sbjct: 200 NELFIKNPEILRYYQEKYRYILIDEYQDTNVVQYLWARMLASLYKNICCV--GDDDQSIY 257

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
            W      +      +   +T         +  L+        +   ++ +   +     
Sbjct: 258 GWRGAEVGNILRFEKDFAGAT---------IIKLEQNYRSTLPILAAASNVINNNK---- 304

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENK 386
                        +     +   ++    + +I   +++EEA  IA     L      N 
Sbjct: 305 -------------NRHGKTLWTDRESGEKIKIISCWSDKEEARYIAGEIDKLVREDRYNA 351

Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              A++       R  +       +   I  G+     +    + + +      ND +A+
Sbjct: 352 GNIAILVRAGFQTRSFEEAFINSAMPYKIIGGLRFYERMEIRDVLAYIRISLNQNDNLAL 411

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
             ++  P            RA  A  L  +R      +I +  ++       +       
Sbjct: 412 ERIINVPK-----------RAIGAASLNKIRVYALERNISNFAAIKEMLEMGEIKAKPYE 460

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
             +  +++ D       +D  +  +  ++             +                 
Sbjct: 461 TLKDLVTKIDNWHERFSIDAPINVVKAILDDSGYLEMLQEEKT----------------- 503

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                      EE    + ++   +         +  ++I+  + +++ E ++       
Sbjct: 504 -----------EEAFGRIENINEMLRAIAE--FNDIHDFIEHSSLVMENEVLETNY--GG 548

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
           ++ I+    ++ L FD + L G  EGV+              Q  L+ +  +    +   
Sbjct: 549 SVTIMTLHAAKGLEFDVVFLPGWEEGVF------------PSQRSLDEEGEKGLEEERRI 596

Query: 687 DFEMANGT-RHLIYTRSLRE----NNIPTIASRWLQRLLVL 722
            +       + L  T +         + +  SR++  +   
Sbjct: 597 AYVGITRAKKDLYITHAESRKIFYEIVRSYPSRFITEIPDE 637


>gi|317486423|ref|ZP_07945250.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
 gi|316922333|gb|EFV43592.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
          Length = 1075

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/640 (9%), Positives = 147/640 (22%), Gaps = 110/640 (17%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             TLV   +    + +    +     T+RA  ELR       G+    LP   +L  +   
Sbjct: 516  RTLVGRVQRLLKDGIPAQRILAVTFTRRAAAELRERLERALGEG-VPLPQADTLHALALS 574

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
             +         + P                    +    +         +      + + 
Sbjct: 575  HWGTAEEALPAVLP-------------------EETARSVFAKANALSAADARRAWDELS 615

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            LA+                E L  L +E+                + +     E N +  
Sbjct: 616  LAR----------------ERLDTLTDEQSA------------LQERYHAAKRERNLADY 647

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                   +        +     +++       P    L+  +    +G       D    
Sbjct: 648  TDLLEHWLARLQAEPER-QWTNVLVDEIQDLSPLQVALVRALM-PGDGHGFFGIGDPDQA 705

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               +                   HP           D++    +   ++ +     S   
Sbjct: 706  IYGFRGA----------------HP-----------DVQSALREAWPSLESVTLAASHR- 737

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR-------M 380
            S + +    S +        K+   +   + + L  A + R+EA  +A  +         
Sbjct: 738  SAAGILTSASALLGPSSACGKLIPTRNMEACLHLFSAPDARKEAAWVADQVALLLGGTSH 797

Query: 381  SLDENKKK------------SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            +L++++++             A++   + L   +K  L R G+        P      ++
Sbjct: 798  TLEDSRRRDATLATPCSPGEVAVLVRMKALIPPLKTALERRGVPCSAPETAPFWGDPSAA 857

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            ++                      P             A +  E +   G       +D 
Sbjct: 858  LIL---ELAGLRFQ-----RPFAAPEGPGSLDVDVPQLAASLPEQLWQAGPSALASHLDA 909

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
              L+            +         E  +    L+D +       +  +  +      L
Sbjct: 910  AKLLAPLFTESAACNALLRAF----REQGKTWEGLLDWVCLRQDLDLVREQAEQVQIMTL 965

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID- 607
              +   +     L  +                    +     + E             D 
Sbjct: 966  HAAKGLEFRAVFLPALEEGILPFPGADALLHGDPGGAIDPDALAEERRLFYVGLTRAQDA 1025

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
            +         +  K  +      L  L     +   +   
Sbjct: 1026 VFVSHAAQRHLYGKALELPPSRFLSALPELFRHTRLVRHV 1065


>gi|295092248|emb|CBK78355.1| Superfamily I DNA and RNA helicases [Clostridium cf.
           saccharolyticum K10]
          Length = 830

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 72/686 (10%), Positives = 173/686 (25%), Gaps = 116/686 (16%)

Query: 50  YVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVSNI 106
              T +A  E+R    +I G   +S     + +            +  L Y+ +  + + 
Sbjct: 58  ITFTNKAAAEMRERVDQIVGFGSESIW---VSTFHSSCVRILRRHIDRLGYDTSFTIYDT 114

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
                L + I           K+                    +++   I  ++ E  + 
Sbjct: 115 DDQRTLMKQIFKRLQVDTKQFKE--------------------RSVLGRISSLKNEMIRP 154

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--- 223
           ++        +          +      + + L   NA       +  +           
Sbjct: 155 DEALTNAGGDFRE------KKIAELYGEYQKALKNNNALDFDDLLVKTVELFEADQEVLA 208

Query: 224 --KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +     I++     +     +L+  +A       V+   D       +     ++   
Sbjct: 209 YYQNRFRYIVVDEYQDTNMVQFKLVDLLAGKYRNICVV--GDDDQSIYKFRGADIENILS 266

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                     P   + KL       +  +     V     GR                  
Sbjct: 267 FEKAF-----PGAQVIKLEQNYRSTQNILNAANEVIRNNRGRK----------------- 304

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---SALITADRNL 398
               +  +         V L + D   EEA  IA  ++    +  +     A++      
Sbjct: 305 ----DKTLWTANGEGERVRLAQFDTAYEEADYIACDIKAESAKENRPFSDFAVLYRTNAQ 360

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +R ++ ++    I   +  G+          + S L  I    D +A+  +V  P     
Sbjct: 361 SRLLEEKMILHSIPYRLVGGVNFYQRKEIKDILSYLKTIANGQDDLAVQRIVNVP----- 415

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                        + +  + R+    +   +  + + L  +   
Sbjct: 416 --------------------------KRGIGATSMGRVIAFASAGGMSFYDALLRVKAVP 449

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF- 577
                 D I      +  +K           I +  + T    +     E      L   
Sbjct: 450 SIGKAADKIGVFTEQIEDFKARLGELSLKELIEEILENTGYRKEIEAEGEVEAETRLQNI 509

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           EE      + +                    +  +     V    E  + + ++    ++
Sbjct: 510 EELINKAVAYWDNEEN---------PTLDGFLEEVALVADVDSMDESENRVVLMTLHSAK 560

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + L G+ +G++P + +        ++ +  L        +       A      
Sbjct: 561 GLEFPHVYLSGMEDGLFPSSMSIMSDDGDAVEEERRLCYVGITRARERLTLTAARQ---- 616

Query: 698 IYTRSLRENNIPTIASRWLQRLLVLG 723
              R        +  SR+++ +  L 
Sbjct: 617 ---RMTNGETRFSRLSRFVEEIPPLL 639


>gi|293189079|ref|ZP_06607806.1| ATP-dependent DNA helicase [Actinomyces odontolyticus F0309]
 gi|292821993|gb|EFF80925.1| ATP-dependent DNA helicase [Actinomyces odontolyticus F0309]
          Length = 944

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 83/816 (10%), Positives = 201/816 (24%), Gaps = 119/816 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R     + G  +  +  + +                        
Sbjct: 134 GEILAITFTNKAAAEMRERAGALVGDDARRM-WVSTFHSACVRLLRYKHEA--------- 183

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                   A L   +        + L      ++ +         K +A  I   + E  
Sbjct: 184 --------AGLSSSFTIYDAQDSQRLIQMVLKAMDVDIKRFTP--KMVAARISDAKNELI 233

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                     +         +  +  A   + +R+   NA       +  +    E+ + 
Sbjct: 234 GPARYAETAGKD------PVSRIVADAYVEYDKRMRASNALDFDDLIMRTVDLLHENPLI 287

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG----AIVLPGLDCHIPTAIWNTIT 275
                     I++     +  A   L+  +          A +    D       +   T
Sbjct: 288 AEHYHRRFRHILVDEYQDTNHAQYVLVRALVGDGKDGVEPAELTVVGDSDQSIYAFRGAT 347

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++      + T +             L+      + + + +N +  R+       L   
Sbjct: 348 IRNIEEFERDFTGARTIL---------LEQNYRSTQNILSAANAVIARNTGRRAKNLWTA 398

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALIT 393
           + D                    + L  AD+E +EA  +   +    D        A+  
Sbjct: 399 SGDGAL-----------------ITLDAADSEHDEARFVVGEIDRLADSGVEWGDIAVFY 441

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R ++  L R GI   +  G             + L  I   +D +A   ++  P
Sbjct: 442 RTNAQSRALEELLVRQGIPYRVVGGTRFYERREIKDALAYLQVISNPDDTVAARRVLNVP 501

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIM-----------DLKSLVLDRIATQKNN 502
               G   +    A  A   ++         +            D+ +L       + + 
Sbjct: 502 KRGIGAKAEEAIAAHAAHYGISFGAALRHLWLRAGCPAGEGEGIDVDALARSTSPDEASA 561

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                  S  +  +   A    D     +        +        +  +   +T    +
Sbjct: 562 DSSAPVSSDGAAGENPGARDGADESATTVESAAAAPASSPVESAPETAPEVLGITPRAAK 621

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE----------------------------- 593
           +              E  G + + +  ++++                             
Sbjct: 622 SAAAFWGLIETLRAAEARGASQADILEEVLDRTGYLAELRRSEDPQDASRVENLAELHSV 681

Query: 594 ----TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                         ++++ +  + D + V  + E+   + ++    ++ L F  + + G+
Sbjct: 682 AGAFAAEAPGGTLADFLERVALVADSDQVPAEGERGGQVTLMTVHTAKGLEFPVVFVTGM 741

Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
            +G +P   +    L    + +   + A   I +A     +          RS       
Sbjct: 742 EDGTFPHQRS----LGDESELEEERRLAYVAITRAREHLYLTRAA-----VRSAWGTPQE 792

Query: 710 TIASRWLQRLLVLG---GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
              SR+L  +               + R      +      +      +R +   P    
Sbjct: 793 MPPSRFLDDIPAELLDVRRAATSGERMRAPYGGSYGSGSYGSGSYGRSRRSEGRDPWGDT 852

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
                 S        P  V     + +       +D
Sbjct: 853 DTGAFGSGRGGASAQPAGVRKVTRMGVAPAAKPAED 888


>gi|297202230|ref|ZP_06919627.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148066|gb|EDY54287.2| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 469

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/434 (10%), Positives = 106/434 (24%), Gaps = 56/434 (12%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK--- 79
             ++   +V       + P     V     T +A  EL     +   K     P +    
Sbjct: 64  TTVMAARVVWLVGTGQVAPE---QVLGLTFTNKAAGELAERVRKALVKAGVTDPDVIDPD 120

Query: 80  -SLGDVV---EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
              G+ V      F   LL  + L   +    RLL  A    +    L +         P
Sbjct: 121 NPPGEPVISTYHAFAGRLLTDHGLRIGLEPTSRLLADATRYQLAARVLREA--------P 172

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---------------GMW 180
              P    +   L  +L  +   +     + E + A   E                    
Sbjct: 173 GPYPALTRSFADLVSDLLTLDAELAEHLVRPEQVRAHDAELLLTLQGAKLTNDALRKVPE 232

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA----EAEHLMKGTKGPIIIAGST 236
              A   L      +     E +            R     E   +++     +++    
Sbjct: 233 TAAARRELAELVVRYRAAKRERDLLDFGDQIALSARLAGIPEVGRVLRDEFRVVLLDEYQ 292

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
            +  A   L++ +     G  V    D       W   +  + +    +  +      + 
Sbjct: 293 DTSVAQRVLLAGLFGEGTGHPVTAVGDPCQAIYGWRGASVANLDDFPQHFAHPDGRPATR 352

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
             L                 S        ++  +    +     +  +   +     +  
Sbjct: 353 QSL-----------------SENRRSGGRLLDLANDLAEPLRAMHAGVEALRPAPGAERD 395

Query: 357 SDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINID 414
             V         EE   +A ++   +   +   + A++         ++  L    + ++
Sbjct: 396 GMVRCALLPTHAEEIDWLADSIAHLVRTGKAPGEIAVLCRTATDFAEIQGALVERDVPVE 455

Query: 415 ISAGIPLSTTLHSS 428
           +     L      +
Sbjct: 456 VVGLSGLLHLPEVA 469


>gi|218550068|ref|YP_002383859.1| exonuclease V subunit beta [Escherichia fergusonii ATCC 35469]
 gi|218357609|emb|CAQ90248.1| exonuclease V (RecBCD complex), beta subunit [Escherichia fergusonii
            ATCC 35469]
          Length = 1186

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 95/899 (10%), Positives = 220/899 (24%), Gaps = 104/899 (11%)

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            + D I+    +   +  L           A   ++        R  EL     +    A 
Sbjct: 312  LFDAIDQLLAEPLSIRDLVIT-------RALAEIRETVAREKRRRGELGFDDMLSRLDAA 364

Query: 215  MRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
            +R+E        ++      +I     + P   R+   + +      +L   D       
Sbjct: 365  LRSESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHQQPETALLLIGDPKQAIYA 424

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEMYGRSMVISK 329
            +      +     S      H  Y+L         +     K      +    R +    
Sbjct: 425  FRGADIFTYMKARS----EVHAHYTLDTNWRSAPGVVNSVNKLFSQTDDAFMFREIPFVP 480

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-- 387
                     +      E +                D +   A   A+ +R  L   ++  
Sbjct: 481  VKSAGKNRGLHFAVNGEKQPAMKMWLMDGEYCSVGDYQSTMAQVCAMQIRDWLQAGQRGD 540

Query: 388  ---------------KSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILT 431
                             +++   R  A  ++  LT   I  + +S    +  TL +  + 
Sbjct: 541  ALLMNGDTSRPVRASDISVLVRSRQEASLIRDALTLLAIPSVYLSNRDSVFETLEAQEML 600

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE----------LVALRGNKN 481
             +L A+        + + +   +      +                         R    
Sbjct: 601  WVLQAVMTPEREDTLRSALATSMMGLNALDIENLNTNETAWDAVVEEFDGYRQLWRKRGV 660

Query: 482  SYDIMDLKSLV---------LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
               +  L S                   +  H+     +   + +    L+       + 
Sbjct: 661  MPMLRALMSARNIAENLLATAGGERRLTDILHISELLQQAGTQLESEHALVRWLSQHILE 720

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVT--------CLQNVCLDEHRKLPNLWFEEEGKTL 584
            P     + +     +  +     +  +         L  +     +        +  + +
Sbjct: 721  PDSNAASQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRQSFEAM 780

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
              L                E + ++   +        +  +  +   G  +       + 
Sbjct: 781  LDLSEAKESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGPTDVHQSA 840

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
            +   L +G           +  +   D+  +T  +        + M       +  R+L+
Sbjct: 841  LGRLLQKGEPQDAAGLRACIESLCDDDITCQTPPRPDNIR---WHMVESASEELSARNLQ 897

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
             +            L    G     +L  R       T   + + +        P     
Sbjct: 898  RSPGDNWRVTSYSGLQQR-GHGIAQDLLPRLDIDAAGTAVSEKSEEPQLTPHQFPRGASP 956

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
                  S  E         + + R  L+LD    + +         +    I  +++  +
Sbjct: 957  GTFLH-SLFETLDFSQPVDSAWVREKLELDGFETWWEP--------VLTEWIDAILRAPL 1007

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            N+    ++ L ++  D   E E   P    +       +   F    + + +    +   
Sbjct: 1008 NETGISLSQLTER--DKQVEMEFYLPITKPLIASQLDTLIRQF----DSLSAGCPPLDF- 1060

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK-----------TGDNPKKETAQKLI 933
                  ++  G+ L GF D +   + G   + DYK           T         +   
Sbjct: 1061 ------LQVRGM-LKGFIDLVFRHQ-GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQEHRY 1112

Query: 934  DPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
            D Q  L   AL      +I      R    + Y+ L+   + +            EL  
Sbjct: 1113 DLQYQLYTLALHRYLRHRIADYDYERHFGGVIYLFLRGVDRDNPQQGIYTTRPDGELIA 1171


>gi|172060152|ref|YP_001807804.1| exodeoxyribonuclease V subunit gamma [Burkholderia ambifaria
           MC40-6]
 gi|171992669|gb|ACB63588.1| exodeoxyribonuclease V, gamma subunit [Burkholderia ambifaria
           MC40-6]
          Length = 1112

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 79/858 (9%), Positives = 184/858 (21%), Gaps = 55/858 (6%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            + VP+    + L  +     G  + +     +       ++    +      P  S   
Sbjct: 35  QVIVPSAALRRRLELDIAARHGVCANVEFTYLA-------QWLWAQIGRVLTVPARSPFA 87

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN-AIWLAKNLADIIDIIETEEKKW 166
               + R   ++     D      P     L  S       LA+ +A ++D   T   +W
Sbjct: 88  PDRLVWRCYRLFAQAEGDAPWLASPRLAAYLSASDDAMRYELAQRVAAVLDHYLTYRPEW 147

Query: 167 EDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVEL-NASSPVGYQIALMRAEA 219
                                  A D     +  W   L EL ++ +P  ++  +     
Sbjct: 148 LAAWQAGESVLAGDAAPRGISDAARDDEHWQAALWRALLAELSDSGTPPAHRFLVEARNL 207

Query: 220 EH---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
           +            + +       P    L+  ++   +  +             W  I  
Sbjct: 208 DPETVARADWPESVSVFALPTMPPLHVALLRELSRWIDVRVYALNPCR----EFWFDIVT 263

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            +            + Q     L ++    +  +  L  ++                P  
Sbjct: 264 AAHAEALDAAGRLDYQQVGHPLLAEWGRQTQAQLHMLHELTESAALGDASRFVGNPAPTW 323

Query: 337 SDMRNTDILENKIPN---IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393
                  IL+ +             + +    +   +   +   L    D +        
Sbjct: 324 LARVQNAILDLQPEAELGEAPAERGIEVHVCHSLARQLEVLHDRLLAWFDADATLQPSDV 383

Query: 394 ADRNLARRVKLELTRFGI----------NIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                       L                  I+   P      + +L   L    +    
Sbjct: 384 LVAVADLAAAGPLIDAVFGTAGAGGARVPYRITGLPPSQANPVARVLLEWLALPERQVGA 443

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
             +   ++       +     +       L A    +         + V     T  +  
Sbjct: 444 PELVEWLRVDAVAARYGIDAAALETVQTWLAAAGARRGLSPTASDDAAVPAPRHTFSDAL 503

Query: 504 HVPHWQSRLSEEDKELAVLL---------VDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                   + E    +   L          + + +                   +   W+
Sbjct: 504 ARLFLGYAMPEGAAPVGAWLPIEAATGSEAELLGRLARFTDDLDGFSRRLASAHTPRAWS 563

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           +L    L             L    +   L ++ + + E        A      +   +D
Sbjct: 564 ELFADTLARFFDSGAAYADALAGVRD--ALDAMLAAMTEGAPDEALPAAVVRAGLAAALD 621

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN- 673
                        +        R L +  + L G+++GV P     + F    +   L  
Sbjct: 622 D--PARGGVPWGGVTFSSLTSLRGLPYRVVCLLGMDDGVLPSLARADEFDLMAVLPKLGD 679

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
            +  +            A     + YT     +N P   +  +  LL             
Sbjct: 680 RQRRDDERNLFLDLLLAARDRLLIAYTGRSIRDNAPLPPAALVDELLDHLALVTAGADTA 739

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
            G         +     QP                  +  + ++                
Sbjct: 740 PGAVDAARRAFIVEHPLQPFAAE------YFRPGSELASYDAERATLASLLAAEAARDAT 793

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
              P F +         +  N      +            ++     +            
Sbjct: 794 REQPFFAQPLPAEPVEPVAFNEFERFWRHPARALLRARLGIVLSDAQAELLDTEPFALDF 853

Query: 854 IIWRHLFHKISHSFLEHE 871
                L  ++    +E +
Sbjct: 854 AGSDALAERVLPLLIESD 871


>gi|217423725|ref|ZP_03455226.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           576]
 gi|254298122|ref|ZP_04965575.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           406e]
 gi|157807754|gb|EDO84924.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           406e]
 gi|217393583|gb|EEC33604.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           576]
          Length = 1114

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 83/881 (9%), Positives = 189/881 (21%), Gaps = 65/881 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W          + +          A D     +  W   L EL+ S        L  
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 217 AEA------EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
           A A                + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--- 387
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLAP 381

Query: 388 --------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                     A      +             I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                 +   ++             + A  A   +     +     +             
Sbjct: 442 DVGAPELVEWLR-------------ADAVAARYGIDATALETVQTWLAASGARRGLAPDA 488

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               +      R +  D    + L   +     P+ T+     +  G   +         
Sbjct: 489 AEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTD 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC------------------IKAN 601
            L        R L    + +      + F       +                     A 
Sbjct: 549 DLDGFARRIARDLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAG 608

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           A     ++   +      P         +        R L +  + L G+++GV P    
Sbjct: 609 AALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLAR 668

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            + F    + + L  +           D  +A   R LI        +   +    L   
Sbjct: 669 ADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDE 728

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
           L+                     R          +      P         S + + +L+
Sbjct: 729 LLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLL 788

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
            +     AR           ++     D    + +    L++ R+     +    +    
Sbjct: 789 AEGARAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVD-T 847

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
           +           +      L  + + +         +    
Sbjct: 848 EPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASP 888


>gi|240125312|ref|ZP_04738198.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae SK-92-679]
 gi|268683914|ref|ZP_06150776.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae SK-92-679]
 gi|268624198|gb|EEZ56598.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae SK-92-679]
          Length = 1200

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 87/928 (9%), Positives = 214/928 (23%), Gaps = 107/928 (11%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
            +L  L      +L  +  D             A      + LAD         +    L 
Sbjct: 287  QLPCLDKDTHERLLKLSSDKLEAGLKKGKTPDAAVFAELQKLADF-------GRDLNALE 339

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKG 225
              +        L   ++L  +     +   E      +      +            +  
Sbjct: 340  EAEETTMIRLQLDLIEYLNSSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETPARAVAE 399

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT--EKSTNITS 283
                 +I     + P    +   +        +    D       +              
Sbjct: 400  NWEIALIDEFQDTDPLQYEIFQKIF-IARNRPLFLVGDPKQAIYSFRGADIYAYLQAAED 458

Query: 284  SNTTYSTHPQYSLAKLL-------DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            +   Y+    Y     L         L  +   ++ +G            +S        
Sbjct: 459  ARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQL 518

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
              +   D  +     +++  +D    E      EA    +  +    ++   + L+    
Sbjct: 519  RWLHENDNEKANKDVLRRRAADYCADEIARALNEASGGRLNFKDRPLQSGDIAVLVRTHN 578

Query: 397  NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
                       R   ++ +S    +  +  ++ L++L+    +      +  ++   +  
Sbjct: 579  EAVMISAALKKRQVQSVLLS-RESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSGIFG 637

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            +   +               +         +     LD          +  +      E 
Sbjct: 638  YDAQQL----------HDFNQNESEILHWAESARTALDIWQKYGIFAAMQQFSQTHGIET 687

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + L+      +      L              ++  W +  ++   N   D         
Sbjct: 688  RLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNGGDNRAIR---- 743

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--TVKPKIEKSSTLFILGTL 634
              E  + L  + +     G         +          +   +     ++  L      
Sbjct: 744  -LESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAELLAKAQLS 802

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ES    +    +      ++   T     L+  + +  +  TA+  +          +  
Sbjct: 803  ESEQKQYADEEMAERLRLLYVALTRAEEQLN--IYAAYSSDTADNPLAYLIEGLPQ-DSR 859

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
              +  T +  ++ I  +  R  +R+             +       +    D   +    
Sbjct: 860  ETVRRTYACEKDGITMLK-RNWRRVADNAPAGTDFAFTEDAPPPAAYRGNADQAAEFAAN 918

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQ------LINDPYAVYARRILKLDFIPHFKKD------ 802
              P+            + S   Q          P    A   +                 
Sbjct: 919  SIPERGFRFVRHTSFTALSRQTQTPDGGEEDACPSLDAAETSVPAMPSETPTASDGISIH 978

Query: 803  --PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
              P  T  G   H I+ +    +  +   E   L+   +  +  +E   P +  +     
Sbjct: 979  DFPKGTQAGLCLHEILEDF---KFGQAAAEQETLIADKLKKYGFEEIWLPAVAEMAEACR 1035

Query: 861  H--------------------------------KISHSFLEHEEKIQSSIEKIFVNIPAK 888
                                             K    +L  ++     + +        
Sbjct: 1036 KTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRLPEVCRAAAE---- 1091

Query: 889  MAIESIGIH--LTGFADRIDLLKSGFVDITDYK-------TGDNPKKETAQKLIDPQLSL 939
              I+   ++  L GF D +     G + I DYK       T     +  A +    Q  +
Sbjct: 1092 -TIDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQHYYLQALI 1150

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQ 967
             A A       +       ++ Y+ L+ 
Sbjct: 1151 YAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|134283801|ref|ZP_01770498.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           305]
 gi|254180284|ref|ZP_04886883.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           1655]
 gi|134244789|gb|EBA44886.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           305]
 gi|184210824|gb|EDU07867.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           1655]
          Length = 1114

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 83/881 (9%), Positives = 189/881 (21%), Gaps = 65/881 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W          + +          A D     +  W   L EL+ S        L  
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 217 AEA------EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
           A A                + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--- 387
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLAP 381

Query: 388 --------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                     A      +             I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                 +   ++             + A  A   +     +     +             
Sbjct: 442 DVGAPELVEWLR-------------ADAVAARYGIDATALETVQTWLAASGARRGLAPDA 488

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               +      R +  D    + L   +     P+ T+     +  G   +         
Sbjct: 489 AEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTD 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC------------------IKAN 601
            L        R L    + +      + F       +                     A 
Sbjct: 549 DLDGFARRIARDLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAG 608

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           A     ++   +      P         +        R L +  + L G+++GV P    
Sbjct: 609 AALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLAR 668

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            + F    + + L  +           D  +A   R LI        +   +    L   
Sbjct: 669 ADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDE 728

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
           L+                     R          +      P         S + + +L+
Sbjct: 729 LLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLL 788

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
            +     AR           ++     D    + +    L++ R+     +    +    
Sbjct: 789 AEGARAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVD-T 847

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
           +           +      L  + + +         +    
Sbjct: 848 EPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASP 888


>gi|330990129|ref|ZP_08314109.1| DNA helicase II [Gluconacetobacter sp. SXCC-1]
 gi|329762817|gb|EGG79281.1| DNA helicase II [Gluconacetobacter sp. SXCC-1]
          Length = 668

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 74/740 (10%), Positives = 180/740 (24%), Gaps = 127/740 (17%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG--K 70
             +   R ++  +++     N           + +     T RA +E+RS   +  G  +
Sbjct: 33  AGTGKTRTLVAGVVDRIGRRNIAP--------SRILAVTFTNRAAEEMRSRIADAVGADR 84

Query: 71  KSTILPIIKSLG--DVVEEKFTADLLLSYNLNPPVSNIQ--RLLELARLILIWRNKLPDI 126
               +    + G   +  +   A L   + +     + +  R L  A +     +     
Sbjct: 85  APGWIGTFHAHGRRQLRTDPDIALLRDGFGIADAEDSRRIVRRLLQAAMADGALDAQDGD 144

Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE--EKKWEDLHALKNEKYGMWWLLA 184
                 +S  +      + + L +  A  +D +      +  ED+ A         W LA
Sbjct: 145 TFRQRVKSVTTRIALFKDDLVLPQQAAAGVDALMQRYPGQTPEDVMA---------WHLA 195

Query: 185 ADFLKIASKYWTERLVELNASSPVGYQI---ALMRAEAEHLMK--GTKGPIIIAGSTGSI 239
           A         + E L E N +      +     M+ + ++          I+        
Sbjct: 196 AA----LYPAYQEALREANMADFGDLLLWPTVTMQRDEDYRRDWGRRFDAILADEFQDVN 251

Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
               + +  ++       +    D       W            ++    +         
Sbjct: 252 RLQYQWLRLLSQDHG--EIFAVGDDAQSIYGWRGANVGYIRNFINDFPGGSMI------- 302

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
                               +              +     ++  LE  +         +
Sbjct: 303 -------------------TLEQNFRSTGHILSAANAVIALDSGRLEKTLFTATGAGDPI 343

Query: 360 ALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISA 417
             +E     EEA  IA  +   L E       A++     ++R ++ +L +  I  ++  
Sbjct: 344 ETMEFSGGLEEAQGIAFEIGRRLLEGVAPDDIAILYRFNFMSRLLEEQLLKAKIPYELVN 403

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
                         +LL                                 +  +   A  
Sbjct: 404 DTAFWQRGVIRDALALLRLAS------------------CPDDMHSDEAFRRVINQPARG 445

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
               +   ++  +        Q         + R ++  +     + +       PL   
Sbjct: 446 VGAKTLAKIEAVAEQDYVSLFQAAEQLFGSARGRSADRVRTFLSTIREISASGDAPLAER 505

Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                   G   +                            E+G+       +++     
Sbjct: 506 IRELLDRTGYADMYRAA-----------------------GEDGRAALENLEELV----G 538

Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
           +        D+      G +V  +      + ++    ++ L +  + L G  + ++P  
Sbjct: 539 LCVEFATLADLFDHAALG-SVSGQASGEGRVRLMTIHAAKGLEYGHVFLMGWEDRLFPSA 597

Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
           T  +                E+ +   A       G R +  T            S +L 
Sbjct: 598 TNPD-------------ADEERRLAYVALT----RGRRRVAVTWCAWRGGRFAEPSVFLS 640

Query: 718 RLLVLGGTDFFDNLKKRGQC 737
            +        +   +  G  
Sbjct: 641 EIPPRALCRGWLRNRLSGTA 660


>gi|312792557|ref|YP_004025480.1| uvrd/rep helicase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312877156|ref|ZP_07737126.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796056|gb|EFR12415.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
 gi|312179697|gb|ADQ39867.1| UvrD/REP helicase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 950

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/397 (12%), Positives = 115/397 (28%), Gaps = 57/397 (14%)

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKN----------------PFLSRVMQSDL 672
            ++    ++ L+F  + L GL E                          PF      + +
Sbjct: 534 VLISIHSAKGLSFPIVFLVGLCESTGYFYGRSPKLRGSYDTSTREYIIAPFWMEKEYTRI 593

Query: 673 NLKTAEKYIGQAAHDFEMANGTR--HLIYTRS-----------LRENNIPTIASRWLQRL 719
              + ++   +    F +A       L    S            +        S  L + 
Sbjct: 594 KNISKQQEKEELKRLFYVAITRPMAGLFLINSSLREAIKKRGGAKSFGEEVGLSYILTKA 653

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
             +G       +K+  +   D+  + +            P    E + R  S S I    
Sbjct: 654 EEIGIEKEVVEIKEDEKTSQDFVSRSENNLSFALPAVILPD-EFENRFRFLSPSHIMDFK 712

Query: 780 NDPYAVYARRILKLDFIPHF----KKDPDRTDRGTLFHNIIT-ELIKKRINKNTPEINHL 834
             P     + ++ L          +   +    GT  H ++    +K   + ++     +
Sbjct: 713 RCPAMFSLKYVMGLPVFDEQSSKEEIQQNAKVLGTTVHRVLELTSLKDIQSLDSNIALAV 772

Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
           ++   +                  +  ++  +F E +   +   + I          +  
Sbjct: 773 LENDFEDE---------------KIVKELILNFFESQFAKEIKDKVIKEESELPFYFKLS 817

Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
              + G  D++  L+   + + D+KT      +       PQL +   A+K     +   
Sbjct: 818 NQMIYGIIDKVYHLED-KIFLIDFKTN-LHFDDAKFSSYIPQLFIYTMAMK----ERFPQ 871

Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
           + + +  +  L++  K D    D+      ++ +K  
Sbjct: 872 KNIFSSIFW-LREGKKFDYEQKDEHLEDVIDVIKKIR 907


>gi|78223100|ref|YP_384847.1| DNA helicase/exodeoxyribonuclease V subunit beta [Geobacter
            metallireducens GS-15]
 gi|78194355|gb|ABB32122.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Geobacter
            metallireducens GS-15]
          Length = 1200

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 84/885 (9%), Positives = 207/885 (23%), Gaps = 105/885 (11%)

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            + A + + + L +L  +        L    A           +I     + P   R+   
Sbjct: 338  ERAVRSYDDLLTDLYRALQGPTGADLADRLASR-----YRAALIDEFQDTDPVQYRIFRE 392

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP------------QYSL 296
            +        +    D       +      +     ++                      +
Sbjct: 393  IY-LDAATPLFLIGDPKQAIYSFRGADIFAYLEARNDVPAENRFTMGENWRSTPSMVEGI 451

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              L          V+ +G        R   +      P    +            I    
Sbjct: 452  NALFRQKRETPFVVEAIGYPEVTAAKREEPLLLDGRDPAPLQLWFMARTPEDGAGISMGP 511

Query: 357  SDVALIEADNEREE-AISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGIN 412
            +   ++ A        ++     R ++D      +  A+I      A  V+  L   GI 
Sbjct: 512  ARERIVMAVGAEIAGLLADGREGRATIDGRGVVPEDIAVIVRSHKEAALVQEGLRGLGIP 571

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
              + + + L  T  +  +  +L A+ + +    +   +   +      +           
Sbjct: 572  SVVQSAMSLFATEEAREICRILEAVAEPSSETRVRAALATTILGMSGNDIARLLEDERGW 631

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
               L   +  +D    +  +                   +  E                 
Sbjct: 632  EERLEAFREYHDFWQGRGFMTMFRTLLAREGVRERLLPFVDGE--------RRLTNVLHC 683

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
              V +      + G   +  W         N    +      L  +E      ++    +
Sbjct: 684  GEVIHGAAMEGSLGVAPLCAWFGE----RVNSPPPDEEYQIRLESDE-----KAVRIVTV 734

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
                 ++   +        + D +      +    +   G+ + +        L   NE 
Sbjct: 735  HVSKGLEYPIVFCPFTWGGVRDDDDTAVCHDGYRMVADFGSDDYKSRR-----LKARNEA 789

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPT 710
            +          L+R       +    +Y   +A  + + +    R       L E     
Sbjct: 790  LAENVRLLYVALTRARHRCYLVWGKFRYAETSALAYLLHHPADSRECDIKAVLGEVMKGI 849

Query: 711  IASRWLQRLLVLGGT-----DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                 L+RL  L            +       +             P  ++ +    + +
Sbjct: 850  SDEALLKRLDGLKEEGGGAIAVTVDPAPEAASFRSGPEGAATPVCPPFGRKIESDWRVAS 909

Query: 766  QPRTYSFSEIKQLIND---PYAVYARRILKLDFIPHFKKDPDR----TDRGTLFHNIITE 818
                 +    ++ + D   P  V A     +  +   +         +  G + H +   
Sbjct: 910  FTSFAARHRPEEELPDRDQPATVVADSETAVFEVLPAEGTIFAFPKGSQAGIVLHAVFEN 969

Query: 819  -----------------------LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                                     ++        + +++   +D       L       
Sbjct: 970  LDFAAATDAKVVSVVAQELARHGFGEEWRGAVCAMVRNVLDAPLDKGDSAFRLADLAPHS 1029

Query: 856  WRHLFHKISH-SFLEHEE----KIQSSIEK---IFVNIPAKMAIESIGIHLTGFADRIDL 907
            WR          F+  E+      +            + A++    +   + GF D +  
Sbjct: 1030 WRAEMEFFFPLRFVGSEQVAAVLRRWGALPDGATLAEVAARLDFSPVQGMVRGFMDMVFE 1089

Query: 908  LKSGFVDITDYKT----------GDNPKKETAQKLIDP-QLSLEAAALKAGSFSQIDC-- 954
             + G   + D+K+          G        ++ + P Q  L   AL      ++    
Sbjct: 1090 HR-GKYYLIDWKSNHLGNRVDDYGRENLGREMERKLYPLQYLLYTVALNLHLKQRVPGYR 1148

Query: 955  --RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
                     Y+ L+                   L ++    L+ +
Sbjct: 1149 YETHFGGALYVFLRGVEPGRPGCGIYHDIPPKGLIDELTSCLVAL 1193


>gi|119470385|ref|ZP_01613113.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Alteromonadales bacterium TW-7]
 gi|119446310|gb|EAW27586.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Alteromonadales bacterium TW-7]
          Length = 672

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 82/727 (11%), Positives = 184/727 (25%), Gaps = 130/727 (17%)

Query: 50  YVPTKRAIQELRSEFIEITG---KKSTILPIIKSLGD--VVEEKFTADLLLSYNLNPPVS 104
              T +A +E+R   ++  G    K   +    +LG   + +E  T      ++L     
Sbjct: 53  VTFTNKAAKEMRERVLQTLGKQEAKGLWVSTFHTLGLEIIKKEITTLGFKPGFSL---FD 109

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +      L+ L      K  D++K L                     +    + +     
Sbjct: 110 DQDTNQLLSELTEDELKKDKDLLKLLKM------------------EIGSWKNELV---- 147

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI---ALMRAEAEH 221
               L      +       A          +  +L   NA       +    L+ + A  
Sbjct: 148 ----LPEQAIRE-ARDAQKAL--FAQLYARYQTQLRAYNALDFDDLIMIPTLLLTSNATS 200

Query: 222 LMK--GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
             +       +++     +  +  +L+  +      A      D       W     ++ 
Sbjct: 201 RERWQQRFKYLLVDEYQDTNTSQYQLVKLLVG--ERARFTVVGDDDQSIYSWRGARPQNL 258

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            + S       +P   L KL                 +     R +  +   +  +  D+
Sbjct: 259 VLLSK-----DYPGLRLIKL---------------EQNYRSAQRILKSANILIANNPHDI 298

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEA-ISIAIALRMSL--DENKKKSALITADR 396
                 E            + +I   +E  E+   +A  +        + K  A++    
Sbjct: 299 EKKLFSELGYGEP------IKVIACRDEEHESERVVAEIISHKFMKRTSYKDYAILYRGN 352

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
           + AR  +  L    I   IS G+          + + L  +   +D  A   +V  P   
Sbjct: 353 HQARGFEKSLMSNRIPYKISGGMSFFARSEIKDIMAYLRLLVNQDDDNAFLRIVNTP--- 409

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                               R    +  +  L +L  ++  +            RL    
Sbjct: 410 --------------------RREIGTVTLEKLGTLANEKHQSLFATCFDNDLGYRLKGRG 449

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                     +       V    N   +    ++ D  +               K   + 
Sbjct: 450 FNALAGFARWV-------VELSDNAVRSDTLEAVKDLVRNINYEAYLYESSPSAKAAEMR 502

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
            +   +    +   +            E +  +  L D      + ++S  + +L    S
Sbjct: 503 MKNVSELYRWITDMLTGDADNEPMTLAEVVSKL-TLRDMLERNEEEDESDAVQLLTLHAS 561

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-R 695
           + L +  + + G+ EG+ P   + +                +    +    +       +
Sbjct: 562 KGLEYPYVFMVGMEEGLLPHQVSID---------------EDNVDEERRLAYVGITRAQQ 606

Query: 696 HLIYTRS----LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            L  T +           T  SR++Q L                        +++    +
Sbjct: 607 ELTLTYAKIRRQFGETSETELSRFVQELPQDDLAFENKKAPSS------QAERMEKGQAR 660

Query: 752 PHYKRPK 758
               R  
Sbjct: 661 VANLRAM 667


>gi|319950043|ref|ZP_08024011.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
 gi|319436293|gb|EFV91445.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
          Length = 445

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/355 (10%), Positives = 77/355 (21%), Gaps = 57/355 (16%)

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
                       L G++E V     A +  +    +  ++   A     +       +  
Sbjct: 11  DGVWPAPRRRSGLLGVDELVDLTEIAGDGPVPSEAERAVSSAAARSAEERRLFYVACSRA 70

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLG------------------------------ 723
           + HL+ T            SR++  +  L                               
Sbjct: 71  SEHLLVTAVESPEEGDVAPSRFIDEIADLATTATAVASPGTPVGPSRHAPTVFSLPHLAV 130

Query: 724 -GTDFFDNLKKRGQCYLDWTRKL----------DYTTKQPHYKRPKPFPP-----LEAQP 767
                  +              L                     P    P      +   
Sbjct: 131 DLRAALHDPSTDPADARHAAGLLAGLRDAGVGEADPRTWFGATEPSTDAPLTPDAPDRPI 190

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
              S S    L   P   + + +                 RG+  H     L +      
Sbjct: 191 AVLSPSGFGALEECPLRWFLQSVGGDS---SDAGSAAPLVRGSAVHA----LTQAVEGGI 243

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
             +      +                     +  +++ +F       +       V  P 
Sbjct: 244 DEDTIRSAVRRRAEALTLSRGWFAERGAETMV--EMAETFRRWRSSTRDEYTTAAVEEPF 301

Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
           +      G+ + G  DR++   +G V   D KT            ++PQL+L   
Sbjct: 302 EFD-AGGGVRVRGRIDRLEATSAGQVVPVDVKT-SAAAASKKDAAVNPQLALYQL 354


>gi|313896290|ref|ZP_07829843.1| putative ATP-dependent nuclease subunit A [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975089|gb|EFR40551.1| putative ATP-dependent nuclease subunit A [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 1012

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 94/955 (9%), Positives = 223/955 (23%), Gaps = 152/955 (15%)

Query: 111 ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
            L R +     KL   +     +   +   + A+    A+   D    ++ E+       
Sbjct: 62  RLTRTVFAAWEKLLKRLPKTAEDLCAAENRANADIRRFAQLTIDFHAAMQREKI------ 115

Query: 171 ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
           A     +      A   L    +        ++ +                   G    I
Sbjct: 116 ARGILYFSDLEHEALHLLCAHPEKLQADPTMVDPTDIAVELQ------------GHFDAI 163

Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE--KSTNITSSNTTY 288
           ++     +      ++  +A   N  IV    D       +             +  +  
Sbjct: 164 MVDEYQDTNGLQEGILRQIARGDNRFIV---GDVKQSIYRFRLADPVLFQQTYRAYRSGA 220

Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
           +     ++++         E +  + +         +   +                ++ 
Sbjct: 221 AEGTLVTMSENFRSRAEVLEPINYIFSQIMTETAVDIAYDEKARLNPGRKFDELPGGKSL 280

Query: 349 IPNIQKCFSDVALIEADNE-----------------REEAISIAIALRMSLDENK----- 386
              ++     V   +  +E                   EA  IA  +   + E       
Sbjct: 281 AAPMEVNLLRVDYTDRADEEEKEEGEEESGEELGKFEVEARFIARRIVELISEKYIVHDG 340

Query: 387 ---------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                        L+ A +  A  +   L   GI            +    ++ +LL A+
Sbjct: 341 GGGHPLTYSDIVILLRAAKGRAEILIEALRDAGIPAYADEPGGYFESGEIRMMLALLAAL 400

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                  A+A ++  P+      E    RA       ++     +    +L + ++ R  
Sbjct: 401 DNARQDTALAAVLASPMIGLRMEELAELRA--HTPRGSIYDMLTADGGDELPAELMTRAR 458

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                  +  W+           + ++         + T             + D     
Sbjct: 459 HA--LERIRAWRRYALVHSVPELLWMLYRDTGYYDYVGTLPGGVLRQANLRMLIDRASEF 516

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID--- 614
               +       R +  L       + +    +       +  +  + ++     +    
Sbjct: 517 ERTNERGLFRFLRYIDALRSRSTDLSAARTLGESENVVRIMTIHKSKGLEFPVVFLSNIG 576

Query: 615 --------GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP---- 662
                   G  +     +   L +    E+    +DTL L  + + +  +  A+      
Sbjct: 577 GSFNEKDTGGDLLYHAREGIGLRLFENTEAGRQRYDTLSLRRVKDVIARETKAEEMRILY 636

Query: 663 --------------------------------FLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                                            L+   ++   L  A    G++  D+  
Sbjct: 637 VAMTRAQEKLILTGTLNVTRSGKDKLEQLREKCLTYAQETGAVLPDAAILGGKSYLDWTA 696

Query: 691 A--NGTRHLIYTRSLRENNIPTIA----SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                               P +     +R+  RL                   L   R 
Sbjct: 697 LALMRHPDGAPLFEADTEITPYLPVSPAARFDVRLFDEDARAARRRAADEDDPILAAVRA 756

Query: 745 LDYTTKQPHYKRPKPFPPL-------EAQPRTYSFSEI-----KQLINDPYAVYARRILK 792
            D   +    +               E      S +E+     + +   P          
Sbjct: 757 DDPLPEGGRAEEVARILDWHYDARGTEHIHAKTSVTELKCRRAELIEEMPPPFAPAFGDT 816

Query: 793 LDFIPHFKKDP-----------DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
              +    + P              +RG   H  + +L     +         + +  ++
Sbjct: 817 SAEMAEAWETPRFLRSDARAYLTPMERGIAMHTFMQQL-----DLTDAADIDAIVRQANT 871

Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------ 895
             EK  L              +         +   + + ++  +P    + +        
Sbjct: 872 LLEKGILTEAER--ESIRIEHVWKFAASRLGRRMRAAKAVYRELPFGRLLPAQKYYAEAQ 929

Query: 896 -----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
                I L G  D +     G   + DYKT        A+     Q+ L   A++
Sbjct: 930 DAEDKIFLQGIIDVLFEEDDGGYVLLDYKTDRKISAAAARARYQFQIDLYGEAVE 984


>gi|291460938|ref|ZP_06600245.1| DNA helicase II [Fusobacterium periodonticum ATCC 33693]
 gi|291379949|gb|EFE87467.1| DNA helicase II [Fusobacterium periodonticum ATCC 33693]
          Length = 724

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/425 (15%), Positives = 138/425 (32%), Gaps = 60/425 (14%)

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
            +  S +K     ++DI+      E    +   +  +  L   +S+ L F  +I+  LN  
Sbjct: 333  DDFSVVKYFFTGYLDILRDSRVDEIFSEEDYPNECIPFLTIHQSKGLEFPVVIVFSLNSK 392

Query: 653  VWP---KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
                   + ++   + R++ S   L   +K        F +A      +   S  E  + 
Sbjct: 393  PNNYEDNDISRQTSIDRLINSSSKLSENDKEKFDFYRKFYVAFSRAKNLLVLSSYEMGVS 452

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
                 +   +  +    F  N              LD  +K             + +   
Sbjct: 453  ENFKPFFYSVRGVNSLQFDINEVN-----------LDEVSK------------KDERKIL 489

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
               ++I    + P   Y      +    +        + G + H  I  + K  + K  P
Sbjct: 490  SYTTDIAPYRHCPMRYYL-----VREKEYATFSKKTLNLGIITHKAIEHINKLFLQKKNP 544

Query: 830  EINHL-MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
             ++   ++ ++ + ++ +N+    +         I   ++E E+     I+K+      +
Sbjct: 545  ILDDEYIENLLKNIYKFQNIDLDDN---FERIISIVKKYIEEEKDNFEYIKKVEA-SEFR 600

Query: 889  MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL--IDPQLSLEAAALKA 946
            +        L G  D I   ++  + I D+KTG        +       QLSL    L+ 
Sbjct: 601  IE---DDYILYGQIDLILEDEN-EIQIIDFKTGK---YNEIEYSSNYRQQLSLYKLLLQK 653

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN--- 1003
                 I       L+Y+        +     K+ +  DE  E+  KN+ +    + +   
Sbjct: 654  KYDKDIK----TYLYYL--------EEDEPKKEIFITDEDLEEDFKNINKTTQDILDNKF 701

Query: 1004 GEQPF 1008
             + P+
Sbjct: 702  PKIPY 706


>gi|298489453|ref|ZP_07007464.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156027|gb|EFH97136.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 727

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/708 (8%), Positives = 163/708 (23%), Gaps = 163/708 (23%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           ++ R L LA        +L+ R      ++   P S LS+  +   A  +   +  ++  
Sbjct: 23  SLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  ISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRLVKRVMRELGLDEQRWPA 141

Query: 198 RLVE---LNASSPVGY----------------------------------QIALMRAEAE 220
           R  +                                                 L+RA   
Sbjct: 142 RQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDL 201

Query: 221 HLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            +++     +       +  +A   +  +V+   D       W 
Sbjct: 202 WRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++ +  SS+   +                              +       +    
Sbjct: 260 GAKIENIHQYSSDFPDTE--------------------------VIRLEQNYRSTASILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +   + N+  L  ++         + L  A NE +EA  +   +  +L    ++   A
Sbjct: 294 AANGLIVNNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + +  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                               +  ++        +      +     
Sbjct: 414 NVP-----------------------ARGIGEKTVEAIREHARHADVSMWEAMRLLVANK 450

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            L+          ++ I      ++                    L +     +      
Sbjct: 451 GLTGRAATALGGFIELIENLSAKVMEMP-----------------LHLMTQTVIEQSGLI 493

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKS 625
                   E+G+       +++           + +       +             E  
Sbjct: 494 TYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHE 553

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++ ++    ++ L F  + L G+ EG++P                ++L+   +   +  
Sbjct: 554 DSIQLMTLHSAKGLEFAHVFLVGMEEGLFP--------------HKMSLEEPGRLEEERR 599

Query: 686 HDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             +       + L+ T +       +     + R +          ++
Sbjct: 600 LAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVR 647


>gi|187931893|ref|YP_001891878.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712802|gb|ACD31099.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 671

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 75/551 (13%), Positives = 158/551 (28%), Gaps = 77/551 (13%)

Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--AEHLMKGTKGPIIIAGST 236
                 A F+    + + +     +    +   I L R     + L       I+I    
Sbjct: 158 DELEEQAAFIYQEYQKYLKSYNSFDFDDLIFQPIQLFRNHSNIQKLWADKFRYILIDEYQ 217

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
            +  +  +L+  +    N   V+   D       W     ++            H Q   
Sbjct: 218 DTNESQYQLLKYLTLGKNKFTVV--GDDDQSIYAWRGSRPENLR----------HLQEDF 265

Query: 297 AKL-LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
           A L +  L+       R+ NV+N++   +  I    L  +                    
Sbjct: 266 ADLKVIKLEQNYRSTGRILNVANKLIENNSHIFDKKLWSNKDYG---------------- 309

Query: 356 FSDVALIEADNEREEAISIAIAL---RMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
              + +I   N+ +EA  IA  +   R+         A++      A  ++  +    I 
Sbjct: 310 -EQIKVISLINDEDEAQFIASDIFFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQMHKIP 368

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
             IS G    +      + S L  I    D  A   ++  P  + G    +      +  
Sbjct: 369 YTISGGSSFFSKAEIKDIISYLRLIVNPYDDRAFLRVINTPKREVGSATVHKLGEYASQH 428

Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
             +      S +  +L+      + + K+       Q   S   +EL  ++   I     
Sbjct: 429 HCSFFHTLYSLENFELRDFTKRNLISFKDLILNTQQQINTSISVQELKNIINSFIDNISY 488

Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
                 ++ +        ++  ++T   +  +   E      L                 
Sbjct: 489 RQWLIDSSSSEKQAEFRYANIIEVTKWIVNQL---EDESYNGLESLATV----------- 534

Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
                   N +  IDI+ R  + +         + + I+    S+ L F  + + G+ EG
Sbjct: 535 -------LNKMLLIDILDRDNEDK-------NDNQVQIITMHASKGLEFKKVYIMGMEEG 580

Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP--T 710
           +               Q  +   + E     A      A     +  T+  ++      +
Sbjct: 581 IL------------PHQQSIEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVS 628

Query: 711 IASRWLQRLLV 721
           + SR++  L  
Sbjct: 629 VPSRFIDELPE 639


>gi|66968454|gb|AAY59606.1| ATP-dependent deoxyribonuclease chain-like [Listeria seeligeri]
          Length = 430

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 106/359 (29%), Gaps = 29/359 (8%)

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
             L  +  L +     +       LA++   ++ EE    DL     +            
Sbjct: 97  AALDQKEKLKVFSRATSRKGFYSELANLFKEMKQEEVSIIDLQE-SAKMLPTSVNNKVHD 155

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           + +  + + E L            + L+  +        +  III G          ++ 
Sbjct: 156 ISLIYQKYEELLA--GKFLENEDYLKLLADKIAESDYLNQTEIIIDGFNSFSKQELTVIE 213

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +    +   +   L+      I   + E S    S+         YSL +     +I  
Sbjct: 214 KLMQKCDKLTISLTLNV---PEIERGLEEFSMFRASTEAY------YSLLETAKLNNIPV 264

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
           E +K L             ++  +                   + Q   +++ + +A+N+
Sbjct: 265 EKIKLLLENKRAKTPPLEFLANVWGQNKF-------------ASFQGETTNLDIHQANNK 311

Query: 368 REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
           R E   IA  +R       +    A++T +  +     +  +  + I I I     ++  
Sbjct: 312 RAEIEGIAREIRELTSNGYRYKDIAILTRNLGDYDVLCETVMEDYNIPIFIDKKRAMAKH 371

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG-FPEKYLSRAKNALELVALRGNKNS 482
                + S L+AI     +  I   VK             + R  + LE   L     +
Sbjct: 372 PFIEFIRSSLDAIQFNWKYEPIFQAVKTEFFFDSAADAADMRRKSDILENYVLENGIQN 430


>gi|183602118|ref|ZP_02963486.1| conserved ATP-dependent DNA helicase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219683030|ref|YP_002469413.1| UvrD/REP helicase [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191350|ref|YP_002968744.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196756|ref|YP_002970311.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183218611|gb|EDT89254.1| conserved ATP-dependent DNA helicase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219620680|gb|ACL28837.1| UvrD/REP helicase [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249742|gb|ACS46682.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251310|gb|ACS48249.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289177477|gb|ADC84723.1| Putative ATP-dependent DNA helicase [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295794343|gb|ADG33878.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 1378

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/475 (10%), Positives = 140/475 (29%), Gaps = 54/475 (11%)

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTV------ANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           +     +++     +    + L++ +            A V    D       W   +  
Sbjct: 324 RRQFTHVLLDEFQDTSTTQSALLAALFHVDEPHGTDRSAAVSAVGDPFQSIYAWRGASPG 383

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +  +  ++     H   +   L   +   R + + +   +N +      + +     +  
Sbjct: 384 AFRMFINDF----HMPAAAEPL--PMTRTRRNSRVVLQGANNLTKVLRRVEQRPSSANAQ 437

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-------KSA 390
           ++    +      +++     +A++      +E  ++   ++ S+++            A
Sbjct: 438 EVPVQPLRNVDDGSVEVDEGTLAVLGFQTRGQEVDAVTRFVKQSVEQYGDACKPGDSPVA 497

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLS----------TTLHSSILTSLLNAIFKL 440
           ++   +      + +L++    + +  G PL                  + +LL  +   
Sbjct: 498 VLFRGKKSMALYEDQLSQ----VTLRDGRPLRVRAVGLSAMLDRPEVQDVLALLKVVGDH 553

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI--------MDLKSLV 492
            D  A+  L+  P    G  +      + A      R                 +  +LV
Sbjct: 554 TDANALMRLLATPRYALGALDLKRLARRAADLNTEYRFRTLVEAGLAPAGTPKREWGALV 613

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                   N  ++     R   E +  A  L D     +   V              ++ 
Sbjct: 614 RQYARNAPNMVYLIDMLLRDDVEAQLEAAGLSDEGRAGVMQAVRAMHRVQDEM-YQPLAQ 672

Query: 553 WTKLTVTC------------LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                V              L+       R       +   +T+++  S+I +       
Sbjct: 673 VIHTAVEALNLDVDLMVASSLRTGGAPAPRDAVRAAIDALLETVNTYTSEIAQQQRPTLR 732

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
             + ++D+       E      ++ + + ++   +S+ L +D + + G+ +G +P
Sbjct: 733 GFLTYLDMANGSDMPEAAADLGDEPADVVLMTVHQSKGLEWDAVAIVGMQQGAFP 787



 Score = 64.6 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 89/882 (10%), Positives = 203/882 (23%), Gaps = 109/882 (12%)

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTE-----RLVELNASSPVGYQIALMRAEAEHLMKG 225
             L               LK+   +         L     +        L R  A+   + 
Sbjct: 530  GLSAMLDRPEVQDVLALLKVVGDHTDANALMRLLATPRYALGALDLKRLARRAADLNTEY 589

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAI-VLPGLDCHIPTAIWNTITEKSTNITSS 284
                ++ AG   +        + V  +   A  ++  +D  +   +   +     +    
Sbjct: 590  RFRTLVEAGLAPAGTPKREWGALVRQYARNAPNMVYLIDMLLRDDVEAQLEAAGLSDE-- 647

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                                         G        R+M   +  +    + + +T +
Sbjct: 648  -----------------------------GRAGVMQAVRAMHRVQDEMYQPLAQVIHTAV 678

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
                +       S +    A   R+   +   AL  +++    + A     R   R    
Sbjct: 679  EALNLDVDLMVASSLRTGGAPAPRDAVRAAIDALLETVNTYTSEIA--QQQRPTLRGFLT 736

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L     +    A   L       +L ++  +     D +AI  + +            +
Sbjct: 737  YLDMANGSDMPEAAADLGDEPADVVLMTVHQSKGLEWDAVAIVGMQQGAFPSNKGDALRV 796

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
               ++    +                         + +  +      + +     A  L 
Sbjct: 797  KALEDRGSKLDWEPPLYEETAKSWLESPEAVPVPIRVDAAILPKFPTIPDAGGSDASSLQ 856

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK-LPNLWFEEEGKT 583
            +  ++ +  + + ++ +N   G   +    +     L  +   +                
Sbjct: 857  ESAVRALRDIDSVESLENDAYGE--LRALLRDNGVLLDELGEPDAWNLSQKEERGRALHA 914

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                   +  T +   A     +   T  I  +  K     S     L    S   +F  
Sbjct: 915  DERRLMYVALTRAKHDALVTYSVGATTSRIPEDNAKESGAPSVFWRELRDSMSCDDSFSQ 974

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM------ANGTRHL 697
             +     +             +       +   + +         +         G    
Sbjct: 975  RVELTAFDNQTTAPARPVAATAGNTAVTYDDLESTQPRSLHERGAKRPEGVIVGKGAEQF 1034

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR----------------------- 734
                       P       Q L          +   R                       
Sbjct: 1035 ATLLVDEPYEEPMEPIDTEQHLPWPSRLSEEMHRTLRKGAAQVVQRMSQNNPTDMPGETA 1094

Query: 735  ---GQCYLDWTRKLDY----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ---L 778
               G+  L+  R+L            T  +           + A     + + +++    
Sbjct: 1095 EGDGRSLLERARQLIDNRATLIREGMTADEIEQAVRMRGQRVLAAKDKLTATGLQRNAEA 1154

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
              +        I  +  +   +        GT FH      ++  +N         M + 
Sbjct: 1155 GENATDFALEIIRPVPQVSTPQAQA-----GTRFHAWAQRYLEAGVNPEYGISQEAMARE 1209

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
            +    E                  +        E   S+ E   V       +  IG  +
Sbjct: 1210 VAHEAEAVEQAERGGRPVPREQRDLLIWKQRFLESAWSAREPAAVEQTVSTFVSGIGKRV 1269

Query: 899  TGFADRIDL--LKSG--------FVDITDYKTGDNPKKETAQKLIDPQLSLEA--AALKA 946
                D +    L  G           I D+KTG  P+    +     QL +     AL+ 
Sbjct: 1270 DAKLDAVFHGGLGDGTSGASGDARYTIIDWKTGSRPRNAQQRAGKLAQLDMYRYFWALQ- 1328

Query: 947  GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
                +I   ++    Y  + +K     +    ++  A+ L+E
Sbjct: 1329 ---KRIPMSQIDAALYY-VSEKDPAKALVVAPQRSEAEVLAE 1366


>gi|145611136|ref|XP_368614.2| hypothetical protein MGG_00630 [Magnaporthe oryzae 70-15]
 gi|145018457|gb|EDK02736.1| hypothetical protein MGG_00630 [Magnaporthe oryzae 70-15]
          Length = 819

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/600 (10%), Positives = 148/600 (24%), Gaps = 86/600 (14%)

Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATAR 244
             L    + +  +L   N        +  +          +    ++I     +      
Sbjct: 180 RELATCYEEYQAQLTRSNLLDYDDLLVKGVELLRAAPECVSNVQAVLIDEYQDTNGVQYD 239

Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
           LM  +A       V+   D                    +      + + S + L   L 
Sbjct: 240 LMKLLAQRHGRITVVGDPDQ-------------------NKVALEENYRSSESILATSLK 280

Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
           I +++ KR   V   ++ R        L                                
Sbjct: 281 IIQQEEKRFDKVLKAVHTRGTKPVLRKLR------------------------------- 309

Query: 365 DNEREEAISIAIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISAGI 419
            N  +EA  I   LR ++  +         A++     L+R ++  L + GI   +  G 
Sbjct: 310 -NSAQEAEWIVAELRRTILLSGDMMNHDDVAILLRSAALSRHIESALGKAGIPYRMVGGF 368

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRG 478
                    ++   L  +++ ++  A+A ++  P         K L       +      
Sbjct: 369 KFYERAEIKLILDYLRVVYQPDNNDALARIINVPKRGAGDATIKALLEEAEKSQQSLWSL 428

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
            +            L +   QK +  +      + ++  E        +L  I+ +++  
Sbjct: 429 LRKHCTGGKQAKTTLRKQVEQKISGGLIRLILDIRKKMDESTAENPYSMLDVISQVLSRL 488

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
             +       +  +W        + + L       N   EE  +      +   +T +  
Sbjct: 489 DFEQHLKDTYN-DEWEGRWANVQEFINLATDFMTGNEVEEELPEIDGLQQTPERDTLARF 547

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
            AN     D+              +    + +     ++ L +  + +     G  P   
Sbjct: 548 LANVSLATDVQN--------NDPGQNRPMVTVSTIHAAKGLEWPVVFIPAAYNGSIPHIR 599

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQ 717
           +                  E    +    +      +  L  +  +              
Sbjct: 600 S------------------EDGDEERRLLYVAMTRAKALLYLSYPVVGGYGNGEKVTLSS 641

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            L  + G               +  R L            +  P   +       S+ +Q
Sbjct: 642 FLSGVEGHFAVQGPTFNSAVLEELARILRRKAPSQKDVFGRLKPFEVSMEDDIFPSDPEQ 701


>gi|58265500|ref|XP_569906.1| ATP-dependent DNA helicase pcra [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57226138|gb|AAW42599.1| ATP-dependent DNA helicase pcra, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 982

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 69/276 (25%), Gaps = 34/276 (12%)

Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPAT 242
               +    + +   L E N+       +  +R   E          I++     +    
Sbjct: 186 TLAVIADLYEEYQLALTEANSLDFDDLLLYALRLFKEAPRVVENIRHILVDEFQDTNTTQ 245

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             L+   A    G  V+   D       W +   ++ N  + +                 
Sbjct: 246 YELLKRFAKAHKGVSVV--GDPDQSIYGWRSAEIENLNKMTKDFP--------------- 288

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                      G  +  +                   ++   ++  +       + V L 
Sbjct: 289 -----------GVEAIYLEENYRSTGSILDAAHAIVSQDRQRIQKSLFTSHPKSAPVTLK 337

Query: 363 EADNEREEAISIAIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISA 417
                  EA  I+  ++  +  +         A++     L+R ++  L +  I   I  
Sbjct: 338 VFSTPVIEASFISTEIKRLIAYSGGLLRYDDFAILLRYNALSRVIESSLQKDSIPNRIVG 397

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
           G      +    L + L          A   +V  P
Sbjct: 398 GHKFFERMEIKDLLAYLQLADNPGFNPAFVRVVNVP 433


>gi|126441290|ref|YP_001058428.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           668]
 gi|126220783|gb|ABN84289.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           668]
          Length = 1114

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 78/881 (8%), Positives = 189/881 (21%), Gaps = 65/881 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKW-------EDLHAL--KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             +W       E + AL       G        +     +     L +        +   
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 214 LMRAEAEHLMKGT---KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
               + + + +        + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARVKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--- 387
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLAP 381

Query: 388 --------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                     A      +             I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                 +   ++             + A  A   +     +     +             
Sbjct: 442 DVGAPELVEWLR-------------ADAVAARYGIDATALETVQTWLAASGARRGLAPDA 488

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               +      R +  D    + L   +     P+ T+     +  G   +         
Sbjct: 489 AEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTD 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC------------------IKAN 601
            L        R L    + +      + F       +                     A 
Sbjct: 549 DLDGFARRIARDLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAG 608

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           A     ++   +      P         +        R L +  + L G+++GV P    
Sbjct: 609 AALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLAR 668

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            + F    + + L  +           D  +A   R LI        +   +    L   
Sbjct: 669 ADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDE 728

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
           L+                     R          +      P         S + + +L+
Sbjct: 729 LLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLL 788

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
            +     AR           ++     D    + +    L++ R+     +    +    
Sbjct: 789 AEGARAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVD-T 847

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
           +           +      L  + + +         +    
Sbjct: 848 EPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASP 888


>gi|312128494|ref|YP_003993368.1| uvrd/rep helicase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778513|gb|ADQ07999.1| UvrD/REP helicase [Caldicellulosiruptor hydrothermalis 108]
          Length = 969

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/419 (11%), Positives = 122/419 (29%), Gaps = 56/419 (13%)

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN-----------------PFLSRV 667
              ++ ++    ++ L+F  + L GL E     +                      ++ + 
Sbjct: 545  DDSVVLISIHSAKGLSFPIVFLVGLCESTGYFSGRSPKLRGSYDTSTKEYIIAPFWMEKE 604

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGT-----------RHLIYTRSLRENNIPTIASRWL 716
                 N+   ++        +                 +  I  R   ++    I   ++
Sbjct: 605  YTRIKNISKQQEKEELKRLFYVALTRPMAGLFMINSTVKEAIKKRGGAKSFGEEIGFNYI 664

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP-LEAQPRTYSFSEI 775
                   G +      K  +                +       P   E + +  S S I
Sbjct: 665  LTKAEEIGIEKEVVRIKEAEKTSQDFDSSSENNNISYALPSIILPDEFENRFKILSPSHI 724

Query: 776  KQLINDPYAVYARRILKLDFIPHF----KKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
                  P     + I+ L          +   +    GT  H ++         K+  +I
Sbjct: 725  MDFKRCPAMFSLKYIMGLPVFDEQSSKEEIQQNAKALGTTVHRVLEL----TKIKDIDDI 780

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
            N+L   I  +  E +     +         K+  +F +     +   + I      +   
Sbjct: 781  NNLESNISLAVLENDFEDKEL-------VRKLVFNFFKSSFIREIKGKVIKEESELRFYY 833

Query: 892  ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951
            +     + G  D++  L++  + + D+KT  N   +  +    PQL +   A++     +
Sbjct: 834  KLGSQMIYGIIDKVYHLEN-KIFLIDFKTNLNFDDKKFES-YIPQLCIYTQAIRQ----R 887

Query: 952  IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL-----KNLIEIVTLLQNGE 1005
               + + +  +  L++    D I   +      E+  +       K+++ ++     G 
Sbjct: 888  EPQKDIMSSIFW-LREGKSFDYIPETEHIEEVKEVIGRIRNIKSKKDILMLIEEYTKGN 945


>gi|134295235|ref|YP_001118970.1| exodeoxyribonuclease V subunit gamma [Burkholderia vietnamiensis
           G4]
 gi|134138392|gb|ABO54135.1| exodeoxyribonuclease V, gamma subunit [Burkholderia vietnamiensis
           G4]
          Length = 1112

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 88/882 (9%), Positives = 198/882 (22%), Gaps = 47/882 (5%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L   L+E+    P +    AS  + VP+    + L  +     G  + +     +     
Sbjct: 13  LADALLEDLAAFPAHNGPWASQQVIVPSAALRRRLELDIAARHGVCANVEFTYLA----- 67

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN- 144
             ++    +      P  S       + R   ++            P     L  S    
Sbjct: 68  --QWLWAQIGRVLTVPARSPFAPDRLVWRCYRLFAQAADGAPWFASPRLAAYLSASDDAM 125

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTER 198
              LA+ +A ++D   T   +W                       A D  +  +  W   
Sbjct: 126 RYELAQRVATVLDHYLTYRPEWLAAWQAGESVLAGDAAPRGISDAARDDERWQAALWRAL 185

Query: 199 LVEL-NASSPVGYQIALMRAEAEH---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           L EL ++ +P  ++  +     +            + +       P    L+  ++   +
Sbjct: 186 LAELSDSGTPPAHRFLVEARNLDAETVERAEWPESVCVFALPTMPPLHVALLRELSRWID 245

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             I            I      ++ +               LA+       +   +  L 
Sbjct: 246 VRIYALNPCREFWFDIVTAAHAEALDAAGRLDYQEVGHP-LLAEWGRQTQAQLHMLHELT 304

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
             +        V + +             +              + +    +   +   +
Sbjct: 305 ESAASGDASRFVENAAPSWLARVQNAILGLQPEAELGDAPAERGIEVHVCHSLARQLEVL 364

Query: 375 AIALRMSLDENKKKSALITADRNLARRVKLEL----------TRFGINIDISAGIPLSTT 424
              L    D +                    L              +   I+   P    
Sbjct: 365 HDRLLAWFDADATLQPSDVLVAVADLAAAGPLIDAVFGTAGAGAARVPYRITGLPPSQAN 424

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
             + +L   L    +      +   ++       +     +       L A    +    
Sbjct: 425 PVARVLLEWLALPDRQVGAPELVEWLRVDAVAARYGIDAAALETVQTWLAAAGARRGLSP 484

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL---------VDHILQCITPLV 535
            +   + V     T  +          + E    +   L          + + +      
Sbjct: 485 AVSDDAAVPAPRHTFADALARLFLGYAMPEGAAPIGAWLPIEAATGSEAELLGRLARFTD 544

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                     G L+   W++L    L             L    +   L ++ + + E  
Sbjct: 545 DLDGFAQRLAGALTPRAWSELFADTLARFFDSGAAYADALAGVRD--ALDAMLAAMTEGA 602

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                 A      +   +D             +        R L +  + L G+++GV P
Sbjct: 603 PDEALPAAVVRAGLAAALDD--PARGGVPWGGVTFSSLTSLRGLPYRVICLLGMDDGVLP 660

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
                + F    +   L  +           D  +A   R LI        +   +    
Sbjct: 661 SLARADEFDLMAVLPKLGDRQRRDDERNLFLDLLLAARDRLLIAYTGRSIRDNAPLPPAA 720

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
           L   L+              +      R          +      P  E        + +
Sbjct: 721 LVDELLDHLALVTAGADAAPEAVDAARRAFVVEHPLQPFAAEYFRPGSELASYDAERATL 780

Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
             L+    A  A R       P   +  +    G           +            ++
Sbjct: 781 ASLLAAEAARDASREQPFFAQPLAAEPVEPVAFGE-----FERFWRHPARALLRARLGIV 835

Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
                +                 L  ++    +E +E+    
Sbjct: 836 LSDAQAELLDTEPFALDFAGSDALAERLLPLLIESDERDVHD 877


>gi|254669882|emb|CBA04366.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
            alpha153]
          Length = 1204

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 87/928 (9%), Positives = 220/928 (23%), Gaps = 111/928 (11%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII-ETEEKKWEDLHALK 173
            L      +L  +  D             A      + LAD    +   EE +   +  L+
Sbjct: 291  LEAKLHERLLKLASDKLEAGLKKGKTPDAAVFAELQKLADFRRDLDALEEAEEATIIRLQ 350

Query: 174  NEKYGMWWLLAADFL--KIASKYWTERLVE-LNASSPVGYQIALMRAEAEHLMKGTKGPI 230
                  +   +   +      + + + L++   A +   +   L RA AE+         
Sbjct: 351  L-DLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAENWETA----- 404

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT--EKSTNITSSNTTY 288
            +I     + P    +   +        +    D       +              +   Y
Sbjct: 405  LIDEFQDTDPLQYEIFQKIF-IAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRY 463

Query: 289  STHPQYSLAKLL-------DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            +    Y     L         L  +   ++ +G            +S          +  
Sbjct: 464  TLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQVRWLHE 523

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
             D  +     +++  +D    E  +   EA    +  +    ++   + L+         
Sbjct: 524  NDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNFKGCPLQSGDIAVLVRTHNEAVMV 583

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                  R   ++ +S    +  +  ++ L++L+    +      +  ++   +  +   +
Sbjct: 584  SAALKKRQVQSVLLS-RESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGYNAQQ 642

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                           +         +     LD          +  +      E + L+ 
Sbjct: 643  L----------HDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLLSR 692

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                 +      L              ++  W +  ++   N   D           E  
Sbjct: 693  NNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNGGDNRAIR-----LESD 747

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--TVKPKIEKSSTLFILGTLESRLL 639
            + L  + +     G         +          +   +     ++  L      E    
Sbjct: 748  EDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQLSEDEQK 807

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
             +    +      ++   T     L+  + +  +  TA+  +          +    +  
Sbjct: 808  QYADEEMAERLRLLYVALTRAEEQLN--IYAAYSSDTADNPLAYLIEGLPQ-DSRETVRR 864

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
              +  ++ I  +  R  QR+             +       +      T +      P+ 
Sbjct: 865  AYACEKDGIAMLK-RNWQRVADNAPAGTDFAFTEDAPPPAAYRGNAGQTAEFAANSIPER 923

Query: 760  FPPLEAQPRTYSFSEIKQ------LINDPYAVYARRILKLDFIPHFKKD--------PDR 805
                       + S   Q          P    A   +                   P  
Sbjct: 924  RFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPSETPTASDGISIHDFPKG 983

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH------- 858
            T  G   H I+ +    +  +       L+   +  +  +E   P +  +          
Sbjct: 984  TQAGLCLHEILEDF---KFGQAAAGQETLIADKLKKYGFEEIWLPAVAEMAEACRKTPLT 1040

Query: 859  --------------------------LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                                         ++   F   +      + +          ++
Sbjct: 1041 GAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDI-RLPEVCRAAAE-----TLD 1094

Query: 893  SIGIH--LTGFADRIDLLKSGFVDITDYK-----------TGDNPKKETAQKLIDPQLSL 939
               ++  L GF D +     G + + DYK           T     +  A      Q  +
Sbjct: 1095 FHTVNGFLNGFIDMVCQDPDGNICVIDYKSNHLGADASAYTQQAMDEAVAHHHYYLQALI 1154

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQ 967
             A A       +       ++ Y+ L+ 
Sbjct: 1155 YAVAAARYFKLRGQPPAAVSVRYLFLRG 1182


>gi|304406520|ref|ZP_07388176.1| UvrD/REP helicase [Paenibacillus curdlanolyticus YK9]
 gi|304344578|gb|EFM10416.1| UvrD/REP helicase [Paenibacillus curdlanolyticus YK9]
          Length = 772

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 68/717 (9%), Positives = 168/717 (23%), Gaps = 103/717 (14%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPII--KSLGDVVEEKFTADLLLSYNLNPPV 103
            + +   +++A  E++     + G  +T    I  ++      +        S  L    
Sbjct: 113 QLLLVTFSRKAADEMKLRLAGLPGISTTTAKSIEARTFHSFCLQLLRRRGNQSAVLG--- 169

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
              Q+ + + RL+      L                          + L  ++   +   
Sbjct: 170 DPGQQRMTVKRLLREAGTTLDYEP----------------------ETLLALLSSYKCRL 207

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
               D+      +             I  + W      ++    +     ++  + + L 
Sbjct: 208 LTASDMPESSTAE--REMKRVL----IRYEQWKAESRAIDFDDVLLLAHRMLSEDEQLLA 261

Query: 224 K--GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                   +++     +      ++  +A      +V+   D       +N  +  +   
Sbjct: 262 TLQERFRYVMVDEFQDTNTVQYEIVRLIAGKQRNLMVV--GDDDQTIYSFNGASADAILS 319

Query: 282 TSSNTTYST----HPQYSLAKLLDFLD--IKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                  +        Y  +  +  L   I R +  R          R    S S    +
Sbjct: 320 FDKLYPDARVVTLSVNYRSSAAIVGLGNAIIRGNRNRRPKTLTVPAPREEAASHSSADGE 379

Query: 336 TSDMRNTDILENKIPNIQKCFSDV-------------------ALIEADNEREEAISIAI 376
            +    +D   +         + +                            EEA  I  
Sbjct: 380 VAAAAASDSPLSHAAAPSAALAGIGAEMPAASDDASLGTIGKPMFARPATSEEEASLITA 439

Query: 377 ALRMSLD---ENKKKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTS 432
           ++R  ++         A++       R     L + GI ++    G     +     + +
Sbjct: 440 SVRKLVESGQYRYGDIAVLYRSAGSGRATIENLLQAGIPVEEHGEGYSFYESSLIRPVMA 499

Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            L       D  AI  ++  P                                       
Sbjct: 500 HLRISLHHRDKQAIEEML--PTLYVNRDAG------------------------------ 527

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
             +   ++ +     W          L     D +L+ +  +    + + +T        
Sbjct: 528 -MKWINEQESERAKKWPLIHLTNFPRLQQFQKDQVLERLRLIKAIASIRPATAIRRIRDA 586

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
           +        +     +      L   E            +     +     +  D   + 
Sbjct: 587 FFDKFAETNRGGTPHKELMKELLDELETSAGRFDTVEAFLAFADEMAKRQADARDKQKQE 646

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE--GVWPKNTAKNPFLSRVMQS 670
               +  P+ E   ++ ++   +S+ L F  + + G  E        T            
Sbjct: 647 RYTASAAPETEPG-SVQMMTIHKSKGLEFPVVFVVGATENIMPHRSATQPQQPKQATTPE 705

Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
               +  E    +    +      R  L  +     +   T  SR+L          
Sbjct: 706 KAAREKEEAIEEERRLLYVAVTRARERLYVSSPAFYHGQKTDISRFLAEAGGAPHPA 762


>gi|296104480|ref|YP_003614626.1| exonuclease V subunit beta [Enterobacter cloacae subsp. cloacae ATCC
            13047]
 gi|295058939|gb|ADF63677.1| exonuclease V subunit beta [Enterobacter cloacae subsp. cloacae ATCC
            13047]
          Length = 1180

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 101/928 (10%), Positives = 212/928 (22%), Gaps = 162/928 (17%)

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            +   IET   +   L+ L           A   ++ A      R  EL     +    A 
Sbjct: 309  LFVEIETLLAEPLTLNDLMIT-------RAMAEIREAVSREKRRRGELGFDDMLSRLDAA 361

Query: 215  M----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
            +           ++      +I     + P   R+   +        +L   D       
Sbjct: 362  LCSENGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWRQQPNTALLLIGDPKQAIYA 421

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
            +            + +    H             +          + +    R +     
Sbjct: 422  FRGAD--IFTYMKARSEVEAHYTLDTN-WRSSPGMVESVNALFSRMDSAFMFREIPFQPV 478

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--- 387
                  + +R      N+                D +   A   A  +R  L    +   
Sbjct: 479  KFAARNASLRFEFNGVNQPAMNFWLLDGEGCGVTDYQHAMAQHCAAQIRDWLSAGTRGEA 538

Query: 388  --------------KSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTS 432
                             ++   R  A  ++  LT   I  + +S    +  TL +  +  
Sbjct: 539  LLWKGNTSAPVKASDITVLVRSRQEAALIRDALTSLNIPSVYLSNRDSVFETLEAQEMLW 598

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            +L A+        + + +   +      +                               
Sbjct: 599  VLQAVLAPERESTLRSALASSMLGLNARDIDAL-------------------------NC 633

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
             +          V + +         +   L+         L T    +      L IS+
Sbjct: 634  DEAAWDAVVEEFVQYRERWQKRGVMAMLRELMRQRHIAENMLATAGG-ERRLTDILHISE 692

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              +   T L++                    L    ++ I   +   ++    ++     
Sbjct: 693  LLQEAGTQLESE-----------------HALVRWLAQQIADPNSNSSSQQMRLE----- 730

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                           + I+   +S+ L +  + L  +           +   S     DL
Sbjct: 731  ----------SDKHLVQIVTIHKSKGLEYPLVWLPFIANYRVQDQAFYHDRESFEAVLDL 780

Query: 673  -------NLKTAEKYIGQAAHDFEMANGTRHL-------IYTRSLRENNIPTIASRWLQR 718
                    L  AE+        +     +          ++ R   +          L R
Sbjct: 781  SKAESSVELAEAERLAEDLRLLYVALTRSVWHCSLGIAPLFRRRGEKAGETDFHLSALGR 840

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT-YSFSEIKQ 777
            L+ LG       L++  +        L   ++  + +   P   +        + +    
Sbjct: 841  LIQLGEPKDAAGLRQCIETLCGEHIALHIPSQPDNSRWQLPEQQITDLQARQITRTVADD 900

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
                 Y+   +    +      K D D    G++    +    +     +     H + +
Sbjct: 901  WRVTSYSGLQQHGQSIAQDLMPKLDVDAAGTGSVPDEPVLTPHQFPRGASPGTFLHSLFE 960

Query: 838  IID-------SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS------SIEKIFVN 884
             +D           K       D  W+ +  +   + L      Q       +     V 
Sbjct: 961  ELDFTQPVSEEWVLKMLQSGGYDAQWQPVLSEWITAILHAPLTAQGVSLSQLTARDKQVE 1020

Query: 885  IPAKMAI-----------------------ESIGIH-----LTGFADRIDLLKSGFVDIT 916
            +   + I                         +        L GF D +   + G   + 
Sbjct: 1021 MEFYLPIASPLRAEALDALIREHDPLSAGCPPLNFRQVQGMLKGFIDLVFRHE-GRYYLL 1079

Query: 917  DYK-----------TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLF 961
            DYK           T             D Q  L   AL      +I           + 
Sbjct: 1080 DYKSNWLGENSEAYTQQAMASAMQMHRYDLQYQLYTLALHRYLRHRIANYRYEDHFGGVI 1139

Query: 962  YIRLKQKFKIDCITNDKKKYSADELSEK 989
            YI L+     D  +          L EK
Sbjct: 1140 YIFLRGVDAADPQSGIFSTRPDAALIEK 1167


>gi|167918352|ref|ZP_02505443.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           BCC215]
          Length = 1114

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 83/881 (9%), Positives = 189/881 (21%), Gaps = 65/881 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W          + +          A D     +  W   L EL+ S        L  
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 217 AEA------EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
           A A                + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--- 387
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLAP 381

Query: 388 --------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                     A      +             I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                 +   ++             + A  A   +     +     +             
Sbjct: 442 DVGAPELVEWLR-------------ADAVAARYGIDATALETVQAWLAASGARRGLAPDA 488

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               +      R +  D    + L   +     P+ T+     +  G   +         
Sbjct: 489 AEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTD 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC------------------IKAN 601
            L        R L    + +      + F       +                     A 
Sbjct: 549 DLDGFARRIARDLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAG 608

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           A     ++   +      P         +        R L +  + L G+++GV P    
Sbjct: 609 AALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLAR 668

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            + F    + + L  +           D  +A   R LI        +   +    L   
Sbjct: 669 ADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDE 728

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
           L+                     R          +      P         S + + +L+
Sbjct: 729 LLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLL 788

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
            +     AR           ++     D    + +    L++ R+     +    +    
Sbjct: 789 AEGARAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVD-T 847

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
           +           +      L  + + +         +    
Sbjct: 848 EPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASP 888


>gi|66968460|gb|AAY59609.1| ATP-dependent deoxyribonuclease chain-like [Listeria seeligeri]
          Length = 430

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 107/359 (29%), Gaps = 29/359 (8%)

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
             L  +  L +     +       LA++   ++ EE    DL     +            
Sbjct: 97  AALDQKEKLKVFSRATSRKGFYSELANLFKEMKQEEVSITDLEE-SAKMLPTSVNNKVHD 155

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           + +  + + E L            + L+  +        +  III G          ++ 
Sbjct: 156 ISLIYQKYEELLA--GKFLENEDYLKLLADKIAESDYLNQTEIIIDGFNSFSKQELTVIE 213

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +    +   +   L+      I   + E S    S+         YSL +     +I  
Sbjct: 214 KLMQKCDKLTISLTLNV---PEIERGLEEFSMFRASTEAY------YSLLETAKLNNIPV 264

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
           E++K L             ++  +     +  +                +++ + +A+N+
Sbjct: 265 EEIKLLLENKRAKTPPLEFLANVWGQNKFASSQGE-------------TTNLNIHQANNK 311

Query: 368 REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
           R E   IA  +R       +    A++T +  +     +  +  + I I I     ++  
Sbjct: 312 RAEIEGIAREIRGLTSNGYRYKDIAILTRNLGDYDVLCETVMEDYNIPIFIDKKRAMAKH 371

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG-FPEKYLSRAKNALELVALRGNKNS 482
                + S L+AI     +  I   VK             + R  + LE   L     +
Sbjct: 372 PFIEFIRSSLDAIQFNWKYEPIFQAVKTEFFFDSAADAADMRRKSDILENYVLENGIQN 430


>gi|300742291|ref|ZP_07072312.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa M567]
 gi|300381476|gb|EFJ78038.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa M567]
          Length = 844

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 72/685 (10%), Positives = 176/685 (25%), Gaps = 105/685 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R     + G ++  +  I +           +            
Sbjct: 50  GQILAITFTNKAAAEMRERIQALIGPRAQHM-WISTFHSFCVRVLRREAKAL-------- 100

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++    +       +  L  IIK+L  ++    P +          ++ + + + +   
Sbjct: 101 GLKSTFTIYDSADS-QRLLTLIIKELNLDTKKFAPKAVG------HRISALKNELVSA-- 151

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                           W      +      +T+RL   N+          +    +    
Sbjct: 152 -----EEYSAAAANNPWEKT---IAQIYTVYTQRLRAANSLDFDDLIGKTVFLLKKFPEI 203

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTV---------------ANHPNGAIVLPGLDC 264
               +     I++     +  A   L+  +                + P    +    D 
Sbjct: 204 ANYYRRKFRHILVDEYQDTNHAQYALVRELVGAHPQGNTREQGPYPDAPPPGELTVVGDS 263

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +     ++     S+ +            +  L+      + + + +N +  R+
Sbjct: 264 DQSIYAFRGADIRNITDFESDYS---------NAHIILLEQNYRSTQNILSAANAVIERN 314

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
                  L   + +                    +    A++E  EA  IA  +    DE
Sbjct: 315 PNRRPKKLWTASGEGT-----------------KIVGYVAESEHAEARYIAQEIDRLADE 357

Query: 385 NK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
           +       A+       +R ++  L R G+   +  G             + L A+   +
Sbjct: 358 HGIKPSDVAIFYRTNAQSRALEELLMRAGLPYRVVGGTRFYERKEIKDALAYLRALSNPD 417

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
           D +++  ++  P    G   + +     + + ++      +          L   A +K 
Sbjct: 418 DDVSVRRILNEPKRGIGAKSETVVADHASAQRISFFAAARAAAAEPGSVPGLGAAAVKKY 477

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT--NKNSTCGNLSISDWTKLTVT 559
              V            E A   ++ +L+    L   +   +        ++S+     V 
Sbjct: 478 AQFVKLMDDLAQIARTESAATTLEAVLEQSGYLAALRESKDIQDESRVENLSELLDAMVE 537

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                          L          S+ S+                             
Sbjct: 538 F--EAENPGADLEQFLEHVSLVADADSIPSRGASADGQTP-----------SAAQIAAEA 584

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
            + +    + ++    ++ L F  + L GL  G++P   A              L    +
Sbjct: 585 AEAKAQGMITLMTLHTAKGLEFPVVFLTGLEHGLFPHQRA--------------LTDEGE 630

Query: 680 YIGQAAHDFEMANGT-RHLIYTRSL 703
              +    +       + L  TRS 
Sbjct: 631 MSEERRLAYVGLTRAMQRLYITRSE 655


>gi|53726140|ref|YP_103385.1| exodeoxyribonuclease V subunit gamma [Burkholderia mallei ATCC
           23344]
 gi|67639456|ref|ZP_00438311.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei GB8
           horse 4]
 gi|124386368|ref|YP_001026676.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei NCTC
           10229]
 gi|126448146|ref|YP_001080041.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei NCTC
           10247]
 gi|254177768|ref|ZP_04884423.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei ATCC
           10399]
 gi|254200342|ref|ZP_04906708.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei FMH]
 gi|254209418|ref|ZP_04915764.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei JHU]
 gi|254358921|ref|ZP_04975194.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei
           2002721280]
 gi|52429563|gb|AAU50156.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei ATCC
           23344]
 gi|124294388|gb|ABN03657.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei NCTC
           10229]
 gi|126241016|gb|ABO04109.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei NCTC
           10247]
 gi|147749938|gb|EDK57012.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei FMH]
 gi|147750191|gb|EDK57262.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei JHU]
 gi|148028048|gb|EDK86069.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei
           2002721280]
 gi|160698807|gb|EDP88777.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei ATCC
           10399]
 gi|238520002|gb|EEP83466.1| exodeoxyribonuclease V, gamma subunit [Burkholderia mallei GB8
           horse 4]
          Length = 1114

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 83/881 (9%), Positives = 189/881 (21%), Gaps = 65/881 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W          + +          A D     +  W   L EL+ S        L  
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 217 AEA------EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
           A A                + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--- 387
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLAP 381

Query: 388 --------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                     A      +             I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                 +   ++             + A  A   +     +     +             
Sbjct: 442 DVGAPELVEWLR-------------ADAVAARYGIDATALETVQAWLAASGARRGLAPDA 488

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               +      R +  D    + L   +     P+ T+     +  G   +         
Sbjct: 489 AEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTD 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC------------------IKAN 601
            L        R L    + +      + F       +                     A 
Sbjct: 549 DLDGFARRIARDLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAG 608

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           A     ++   +      P         +        R L +  + L G+++GV P    
Sbjct: 609 AALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLAR 668

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            + F    + + L  +           D  +A   R LI        +   +    L   
Sbjct: 669 ADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDE 728

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
           L+                     R          +      P         S + + +L+
Sbjct: 729 LLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLL 788

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
            +     AR           ++     D    + +    L++ R+     +    +    
Sbjct: 789 AEGARAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVD-T 847

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
           +           +      L  + + +         +    
Sbjct: 848 EPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASP 888


>gi|323697653|ref|ZP_08109565.1| UvrD/REP helicase [Desulfovibrio sp. ND132]
 gi|323457585|gb|EGB13450.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132]
          Length = 1049

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 70/727 (9%), Positives = 168/727 (23%), Gaps = 99/727 (13%)

Query: 226  TKGPIIIAGSTGSIPATARLMSTVAN--HPNGAIVLPGLDCHIPTAIWNTITEKST---- 279
                +++     +     R ++ +A      G  +    D       W            
Sbjct: 364  RLHHLLVDEFQDTNRDQWRAITPLAGECLAKGGSLFFVGDVKQAIYGWRGGDSALFDEVM 423

Query: 280  -----NITSSNTTYSTHPQ-YSLAKLLDFLDIKREDVKRLGNVSNEMYGRS--------M 325
                    + +    T P  +   + +   + +        + + ++  R          
Sbjct: 424  SQPDVAGLAEDAEAETLPDNWRSHRNVVEFNNRFFANMEDPDQAGDLADRVLPDADPAFR 483

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--D 383
                  L     D   +    ++          +    A    E+ +    AL   L   
Sbjct: 484  AEFAGQLMRTFRDCAQSLPDRHRDTAGYVRMVRLEGGTAAEIVEQTLERLDALMDDLTAR 543

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
               +   ++      A  V   L R  I +     + L        L   L  +    D 
Sbjct: 544  RAYRDIGILVRSHFHAALVCDLLVRKNIPVITENSLQLDRHPVVRQLAGFLAFLDFPRDD 603

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
             A  T V                                    +L          +  + 
Sbjct: 604  AAFLTFV---------------------------------GGKELFLAESGLAEAELLDW 630

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
             +   +  L  + +E        +++         T  + T   + +    +        
Sbjct: 631  LIRPRKRPLGVQFREDFPGPWRRLIEPFYNQSGLMTPYDLTMEAVRVFRVLERHPEAELY 690

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
            V                                    +   +++      D E V P  E
Sbjct: 691  VRRFLEVVHLAEENGYG--------------------SLSAFLEYWEEKSDQEKV-PLPE 729

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                + I+   +++ L F   I+   +            F  +  +    L   +K +G+
Sbjct: 730  NIDAVRIMTVHKAKGLEFPVAIVPFHHWKTDTDR----HFTVQAYRGRNLLVPLKKDLGR 785

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
               +         L             +   + ++ L +        + +  +   D   
Sbjct: 786  PYQESLGRAVREQLNLLYVAWTRAREELYGFFPEKALKIANPVVLKAMDQFLELDDDGVF 845

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
            +L  T  +       P P     P   + +++   +           L++          
Sbjct: 846  ELGRTPAETRPSEAAPRPEPRDIPPAETTADLMGWLP---------RLRVYRHNLDDYFF 896

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
            +   RG + H ++  +  +    N  + +  +   +    E   L              +
Sbjct: 897  NERMRGEVAHRVMEHM--RVTGDNAADADRAVALAVQDFPELGGLAEADRAQLDADLRAM 954

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
            +   L  +              P ++  +  G       D +         + D+KTG  
Sbjct: 955  AAWALNDDRLR--GWLATGAREP-EVLDQDGGFK---RFDLLVAGPD--AVVVDFKTGRP 1006

Query: 924  PKKETAQ 930
                  Q
Sbjct: 1007 DPHNEVQ 1013


>gi|53718917|ref|YP_107903.1| putative exodeoxyribonuclease V gamma chain [Burkholderia
           pseudomallei K96243]
 gi|52209331|emb|CAH35276.1| putative exodeoxyribonuclease V gamma chain [Burkholderia
           pseudomallei K96243]
          Length = 1114

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 84/881 (9%), Positives = 191/881 (21%), Gaps = 65/881 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W          + +          A D     +  W   L EL+ S        L  
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 217 AEA------EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
           A A                + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALSPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----K 386
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPNLAP 381

Query: 387 KKSALITADRNLARRVK-------LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               +   D   A  +               I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYWITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                 +   ++             + A  A   +     +     +             
Sbjct: 442 DVGAPELVEWLR-------------ADAVAARYGIDATALETVQTWLAASGARRGLAPDA 488

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               +      R +  D    + L   +     P+ T+     +  G   +         
Sbjct: 489 AEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTD 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC------------------IKAN 601
            L        R L    + +      + F       +                     A 
Sbjct: 549 DLDGFARRIARDLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAG 608

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           A     ++   +      P         +        R L +  + L G+++GV P    
Sbjct: 609 AALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLAR 668

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            + F    + + L  +           D  +A   R LI        +   +    L   
Sbjct: 669 ADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDE 728

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
           L+                     R          +      P         S + + +L+
Sbjct: 729 LLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLL 788

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
            +     AR           ++     D    + +    L++ R+     +    +    
Sbjct: 789 AEGARAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVD-T 847

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
           +           +      L  + + +         +    
Sbjct: 848 EPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASP 888


>gi|311278235|ref|YP_003940466.1| exodeoxyribonuclease V, beta subunit [Enterobacter cloacae SCF1]
 gi|308747430|gb|ADO47182.1| exodeoxyribonuclease V, beta subunit [Enterobacter cloacae SCF1]
          Length = 1179

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 90/905 (9%), Positives = 204/905 (22%), Gaps = 118/905 (13%)

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            + D +E        L  L           A   ++ A     +R  EL     +      
Sbjct: 308  LFDAVEALLAAPPSLDDLVIS-------RAMVEIRDAVAREKQRRGELGFDDMLSRLDKA 360

Query: 215  MR----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
            ++          ++      +I     + P   R+   +        +L   D       
Sbjct: 361  LQGESGEALAGAIRSRFPVAMIDEFQDTDPQQYRIFRRIWRQQPETALLLIGDPKQAIYA 420

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
            +      +      +                   + +   +  G   N    R +     
Sbjct: 421  FRGADIFTYMRARGDVAAHYTLD---TNWRSAPGVVQSVNRLFGLSENPFMFREIPFLPV 477

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--- 387
                    +R     E +            +   D +   A   A  +R  L   ++   
Sbjct: 478  NAAAKNHGLRFELQGETQPAMSLWLMPGNGVGVGDYQHFMAQLCAGQIRDWLSAGQRGEA 537

Query: 388  --------------KSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTS 432
                             ++  +R  A  V+  L    I  + +S    +  T  +  L  
Sbjct: 538  LLWRDSASRPVQASDITVLVRNRLEASLVRDALNALAIPSVYLSNRDSVFATPEAQELLW 597

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            +L A+        + + +   +      +              +        +   + ++
Sbjct: 598  VLQAVLAPERESLLRSALATAMFGLTARDLEALNLDEQAWDDVVEEFAGYRQLWQQRGVM 657

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                A         +  +    E           +   +      +          ++  
Sbjct: 658  AMLRALMSARHIAENLLATQGGE---------RRLTDILHISELLQEAAGQLESEHALVR 708

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
            W       +  +   +          E  K L  +    I     ++ + +    I    
Sbjct: 709  WL------VVQIAGPDDGASGQQMRLESDKHLVQIV--TIHKSKGLEYSLVWLPFIAHYR 760

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
               +      +  + +  L   +  L   +   L      ++   T      S      +
Sbjct: 761  KQEQAFYHDRDSFAAVLDLHNGQESLELAEAERLAEDLRLLYVALTRAIWHCS----LGI 816

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
               ++ +    A  D   +   R +          +           + L   +  D   
Sbjct: 817  APLSSRRSDKAAETDLHQSALGRLVQNGEPKDAAGLEQCLRALCDEHIALYIPELPDA-- 874

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
             R Q   D    L     +                +         L           ++ 
Sbjct: 875  GRWQALADALPALQARDMRRRIVDDWRVTSYSGLQQRGHSVAQDLLPRLDIDAAGVGLVA 934

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
             +      + P     GT  H++  E+                + +     +++      
Sbjct: 935  SEPALTPHQFPRGASPGTFLHSLFEEM-------------DFTQPVAAEWVQEKLARNGF 981

Query: 853  DIIWRHLFHKISHSFLEHEEK------IQSSIEKIFVNIPAKMAI--------------- 891
            D  W  +  +     L+           Q S +   V +   + I               
Sbjct: 982  DGQWTPVLTQWLEGILQTPLTGAGVSLSQLSDKDKQVELEFYLPIESLLEPQQLDALIRR 1041

Query: 892  --------ESIGIH-----LTGFADRIDLLKSGFVDITDYKTG---------DNPKKETA 929
                      +        L GF D +     G   + DYK+            P  E A
Sbjct: 1042 HDPLSAGCPPLDFRRVSGMLKGFIDLVFRH-DGRYYLLDYKSNWLGESHEAYTRPAMEQA 1100

Query: 930  QKL--IDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSA 983
             +    D Q  L + AL      ++      R    + Y+ L+     D          +
Sbjct: 1101 MQSHRYDLQYQLYSLALHRYLRHRLADYDYERHFGGVIYLFLRGMDGSDSGQGIFTTRPS 1160

Query: 984  DELSE 988
              L +
Sbjct: 1161 QALVD 1165


>gi|229818113|ref|ZP_04448395.1| hypothetical protein BIFANG_03405 [Bifidobacterium angulatum DSM
           20098]
 gi|229784717|gb|EEP20831.1| hypothetical protein BIFANG_03405 [Bifidobacterium angulatum DSM
           20098]
          Length = 1288

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/516 (10%), Positives = 130/516 (25%), Gaps = 42/516 (8%)

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARL 245
           L  A      RL     S        L+          +     +++     +    A L
Sbjct: 255 LVEAYAAEKRRLNMAEFSDFTIAAYQLVTRFPSIGARYRKRFSHVLLDEYQDTSTTQAAL 314

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           ++T+     G  V    D       W   +                 Q       +    
Sbjct: 315 IATLFR-GEGTAVSAVGDPFQSIYAWRGASP----------GAFRMFQRDFHLPPERKPY 363

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                +R   +  E      +  +      +S       +    P        V ++  +
Sbjct: 364 SLSVTRRNAKLVLEAANNLTMPLRGTPSRPSSSPMREVDVNELAPLDNAPSGTVGVLGYE 423

Query: 366 NEREEAISIAIALRMSLDENKK---------KSALITADRNLARRVKLELTRFGINIDIS 416
              +E   +      ++  N             A++   +      +  L + G++    
Sbjct: 424 TLGQEIDGVVRFCHEAIARNTHAGQSGEHKGSVAVLFRSKAKMPLFQQALEQSGLSAVAV 483

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--------------EK 462
               +        + SLL      +D  ++  L+  P    G                E 
Sbjct: 484 GYSAMLERPEVRDILSLLRVACDHSDSASLMRLLATPRFGLGATALAALAGIANTLNLES 543

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLD---RIATQKNNTHVPHWQSRLSEEDKEL 519
                  A  + A         ++      +     +A       +P    R S  D+  
Sbjct: 544 QYRALVMAGLVPADAPRGQWDALVREHRDSVINSVFVADLLLRDDLPEQLERCSRIDEHD 603

Query: 520 AVLLVDHILQCITPLVTYKTNKNS--TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           A  ++       T         +        ++       V    +     +  +  +  
Sbjct: 604 ARTIIRAGAVLRTVCDAIGRPLSDVVRTATQALELDVDAVVAQALHGDGTVNPTVARIPV 663

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           E     + +  S+I    +      + W D +  + D  +       +  + ++   +S+
Sbjct: 664 EAIIDLVDTYLSEIAAGQAPTLRGFMAWTDTLRTIEDETSTLNADSGAD-VELMTIHQSK 722

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            L +D + +  L EGV+P     +  +    +    
Sbjct: 723 GLEWDAVAVVELGEGVFPSKQGDSLAVKVDERHPGG 758



 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 59/541 (10%), Positives = 125/541 (23%), Gaps = 32/541 (5%)

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA--- 497
             D +A+  L +            +   +           +         S +    A   
Sbjct: 726  WDAVAVVELGEGVFPSKQGDSLAVKVDERHPGGWHDGVWEAPEYCETATSWLTTIDAVPV 785

Query: 498  --TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                              E D   ++ L+D        +       +   G +       
Sbjct: 786  PVRADAGILPRFPHDAPGEADPIESLELLDAAETIDDEVFGTLRAFDDEIGAMDPDSLYL 845

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID-----IIT 610
              V         + R+L  +      + L   + +  E G   +    +           
Sbjct: 846  TQVEEYGRRYHCDERRLAYVALTRARRDLLLTYCQTGEEGRDPRVLGAKTRKSKPSVFWQ 905

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
             + D   +   I  + +    G  E   L     +     E       A          +
Sbjct: 906  EVHDSLRIHNDIATTPSNLPEGADEQIALPEGYFVGDHAREYEDMVVGAAWLEEPETHDA 965

Query: 671  DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
              +L    +   +       +        T +  ++      S          G   +D 
Sbjct: 966  QTSLPWPARLSREVGDSLLQSAKQVRQAMTGADADDAASNATSDVDCHNPENNGQSLYDK 1025

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
             +         T  LD        +R        ++    S + ++ L          R 
Sbjct: 1026 ARMLVADEDLMTGMLDGDALDAAVRRKAQRVMAASRQ---SVTGLQALAGGLSGRDETRF 1082

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK-ENLP 849
             +    P           GT FH      +     + + E    M Q +D   +  ++  
Sbjct: 1083 WRGIIRPIPSVASPAASAGTRFHAWAERFMNAMHPEESGESRSGMLQELDKAVQACQSGD 1142

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-GIHLTGFADRID-- 906
                ++        S           +    ++      ++I  + G  + G  D +   
Sbjct: 1143 ADSSVLEWERRLASSAW---------AQRVPVWAERQIVVSIGDLNGQVVNGKLDAVFFG 1193

Query: 907  ----LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
                  ++    I D+KTG  P           QL +    L       +    +    Y
Sbjct: 1194 GLDPQDRTKRFTIVDWKTGHRPTSSEDTARKLLQLDMYRLLLAE--IENVPLEAIDATLY 1251

Query: 963  I 963
             
Sbjct: 1252 Y 1252


>gi|188583340|ref|YP_001926785.1| UvrD/REP helicase [Methylobacterium populi BJ001]
 gi|179346838|gb|ACB82250.1| UvrD/REP helicase [Methylobacterium populi BJ001]
          Length = 1143

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 97/910 (10%), Positives = 197/910 (21%), Gaps = 119/910 (13%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI--EITGKKSTILPIIKSLGD-- 83
             TLV          +    + +   + +A  EL             S       + G   
Sbjct: 222  RTLVRRIESLVDEGIDPNGILVLTFSNKAAAELMDRLALSRPEAAASVWTGTFHAFGLDV 281

Query: 84   ---VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY-PESPLSLP 139
                 E    +      +    ++ ++    LA L L     L D ++DL    S +S  
Sbjct: 282  IRRFHERLGRSASPKLVDKPTAITMLE--GVLASLPLAHYRDLWDPVQDLSNILSAISRA 339

Query: 140  ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
                      + LAD +    T             +         A    I  + +   L
Sbjct: 340  KDELVDHVRYRELADAMQRAAT-------------DDATRLRAARAHEEAIVYEAYERLL 386

Query: 200  VELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
             E +A       +  +R  AEH      +      +++        AT RL+  +A    
Sbjct: 387  SEADALDFGDLVMRPVRLAAEHPDVAKALSLRHRHLLVDEYQDVNLATVRLIRALA-ADE 445

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
            G  +    D       +   T  S     ++   +T                      LG
Sbjct: 446  GERLWVVGDARQSIYRFRGATSASMAAFRAHYPGAT----------------------LG 483

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
             +      R  +I        + D           P+         L +A    +E   +
Sbjct: 484  ALDVNYRSRKEIIDTFTSFAASVDAFRPLGALGLAPDRGASGLKPVLHDAGTPDDEVALV 543

Query: 375  AIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
            A +   +     + ++ A++    +        L    + +      PL        L  
Sbjct: 544  AASAAQAKAAGVDYREQAVLCTTNDRLAEFAAGLIARDVPVLYLG--PLFERPEVKELLC 601

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            LL           +  +   P  +    +     A                 + D     
Sbjct: 602  LLALFHDP-RAATLVRVATMPGFEMELGDVAAVAA----------------HLRDASGPP 644

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            LD +A       +    +      +E+     D                     +  + D
Sbjct: 645  LDWLAAADAIPGLGPSATAPLRRLREVCGGFADRTPP-------------WRIASALVLD 691

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
               +      +  L E      +W                +  +      I+ + ++   
Sbjct: 692  RLGIGRRIAASGTLPERMAGIAIWQ---FLNFLRSLPVEGQFPTFEALRRIKRLVVLGEE 748

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--NEGVWPKNTAKNPFLSRVMQS 670
                 V     +   + I+     + L F  +   G+              P    +++ 
Sbjct: 749  KSLRHVPDAALELDAVRIMTIHACKGLEFQLVHAPGMIKTGLPRTAKPPPCPPPDALIEG 808

Query: 671  DLNLKTAE-----KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
               L   +         +A   F + +  R  +           T               
Sbjct: 809  SDGLTGPQACLTGHEEQEACLFFVLLSRARDDLRLYRSTMMAGGTKKRN----------- 857

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                +   R    L     L      P    P   P     P       +          
Sbjct: 858  --PSDYNARIAATLGRPPALVRLPSPPPPSGPAAVPITWETPFALDHQHLDSYGKCGLRF 915

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                +L L             +        +         +             +     
Sbjct: 916  LYTYLLGLGGRRDETPYMRMHNAVAETVRWLDRNFDAGRAEPEGFGEAFAAAWTEHGPVD 975

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
                     I   +   +    L  EE                +   +  +         
Sbjct: 976  HGHAEAYRTIADEMLRFLLG--LRDEEGRLPPEALSLAVAGGSVLSRAHDVV-------- 1025

Query: 906  DLLKSGFVDI 915
                 G + +
Sbjct: 1026 -RNADGRLVV 1034


>gi|115351151|ref|YP_772990.1| exodeoxyribonuclease V subunit gamma [Burkholderia ambifaria AMMD]
 gi|115281139|gb|ABI86656.1| exodeoxyribonuclease V, gamma subunit [Burkholderia ambifaria AMMD]
          Length = 1112

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 80/858 (9%), Positives = 185/858 (21%), Gaps = 55/858 (6%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            + VP+    + L  +     G  + +     +       ++    +      P  S   
Sbjct: 35  QVIVPSAALRRRLELDIAARHGVCANVEFTYLA-------QWLWAQIGRVLTVPARSPFA 87

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN-AIWLAKNLADIIDIIETEEKKW 166
               + R   ++     D      P     L  S       LA+ +A ++D   T   +W
Sbjct: 88  PDRLVWRCYRLFAQAAGDAPWLASPRLAAYLSASDDAMRYELAQRVAAVLDHYLTYRPEW 147

Query: 167 EDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVEL-NASSPVGYQIALMRAEA 219
                                  A D     +  W   L EL ++ +P  ++  +     
Sbjct: 148 LAAWQAGESVLAGDAAPRGISDAARDDEHWQAALWRALLAELSDSGTPPAHRFLVEARNL 207

Query: 220 EH---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
           +            + +       P    L+  ++   +  +             W  I  
Sbjct: 208 DAETVARADWPESVSVFALPTMPPLHVALLRELSRWIDVRVYALNPCR----EFWFDIVT 263

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            +            + Q     L ++    +  +  L  ++                P  
Sbjct: 264 AAHAEALDAAGRLDYQQVGHPLLAEWGRQTQAQLHMLHELTESAALGDASHFVGNPAPTW 323

Query: 337 SDMRNTDILENKIPN---IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393
                  IL+ +             + +    +   +   +   L    D +        
Sbjct: 324 LARVQNAILDLQPEAELGEAPAERGIEVHVCHSLARQLEVLHDRLLAWFDADATLQPSDV 383

Query: 394 ADRNLARRVKLELTRFGI----------NIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                       L                  I+   P      + +L   L    +    
Sbjct: 384 LVAVADLAAAGPLIDAVFGTAGAGGARVPYRITGLPPSQANPVARVLLEWLALPERQVGA 443

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
             +   ++       +     +       L A    +         + V     T  +  
Sbjct: 444 PELVEWLRVDAVAARYGIDAAALETVQTWLAAAGARRGLSPTASDDAAVPAPRHTFSDAL 503

Query: 504 HVPHWQSRLSEEDKELAVLL---------VDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                   + E    +   L          + + +                   +   W+
Sbjct: 504 ARLFLGYAMPEGAAPVGAWLPIEAATGSEAELLGRLARFTDDLDGFSRRLASAHTPRAWS 563

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           +L    L             L    +   L ++ + + E        A      +T  +D
Sbjct: 564 ELFADTLARFFDSGAAYADALAGVRD--ALDAMLAAMTEGAPDEALPAAVVRAGLTAALD 621

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN- 673
                        +        R L +  + L G+++GV P     + F    +   L  
Sbjct: 622 D--PARGGVPWGGVTFSSLTSLRGLPYRVVCLLGMDDGVLPSLARADEFDLMAVLPKLGD 679

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
            +  +            A     + YT     +N P   +  +  LL             
Sbjct: 680 RQRRDDERNLFLDLLLAARDRLLIAYTGRSIRDNAPLPPAALVDELLDHLALVTAGADTA 739

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
            G         +     QP                  +  + ++                
Sbjct: 740 PGAVDAARRAFIVEHPLQPFAAE------YFRPGSELASYDAERATLASLLAAEAARDAT 793

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
              P F +         +  N      +            ++     +            
Sbjct: 794 REQPFFAQPLPAELVEPVAFNEFERFWRHPARALLRARLGIVLSDAQAELLDTEPFALDF 853

Query: 854 IIWRHLFHKISHSFLEHE 871
                L  ++    +E +
Sbjct: 854 AGSDALAERVLPLLIESD 871


>gi|325498396|gb|EGC96255.1| exonuclease V subunit beta [Escherichia fergusonii ECD227]
          Length = 1173

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 95/899 (10%), Positives = 220/899 (24%), Gaps = 104/899 (11%)

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            + D I+    +   +  L           A   ++        R  EL     +    A 
Sbjct: 299  LFDAIDQLLAEPLSIRDLVIT-------RALAEIRETVAREKRRRGELGFDDMLSRLDAA 351

Query: 215  MRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
            +R+E        ++      +I     + P   R+   + +      +L   D       
Sbjct: 352  LRSESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHQQPETALLLIGDPKQAIYA 411

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEMYGRSMVISK 329
            +      +     S      H  Y+L         +     K      +    R +    
Sbjct: 412  FRGADIFTYMKARS----EVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFVP 467

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-- 387
                     +      E +                D +   A   A+ +R  L   ++  
Sbjct: 468  VKSAGKNRGLHFAVNGEKQPAMKMWLMDGEYCSVGDYQSTMAQVCAMQIRDWLQAGQRGD 527

Query: 388  ---------------KSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILT 431
                             +++   R  A  ++  LT   I  + +S    +  TL +  + 
Sbjct: 528  ALLMNGDTSRPVRASDISVLVRSRQEASLIRDALTLLAIPSVYLSNRDSVFETLEAQEML 587

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE----------LVALRGNKN 481
             +L A+        + + +   +      +                         R    
Sbjct: 588  WVLQAVMTPEREDTLRSALATSMMGLNALDIENLNTNETAWDAVVEEFDGYRQLWRKRGV 647

Query: 482  SYDIMDLKSLV---------LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
               +  L S                   +  H+     +   + +    L+       + 
Sbjct: 648  MPMLRALMSARNIAENLLATAGGERRLTDILHISELLQQAGTQLESEHALVRWLSQHILE 707

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVT--------CLQNVCLDEHRKLPNLWFEEEGKTL 584
            P     + +     +  +     +  +         L  +     +        +  + +
Sbjct: 708  PDSNAASQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRQSFEAM 767

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
              L                E + ++   +        +  +  +   G  +       + 
Sbjct: 768  LDLSEAKESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGPTDVHQSA 827

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
            +   L +G           +  +   D+  +T  +        + M       +  R+L+
Sbjct: 828  LGRLLQKGEPQDAAGLRACIESLCDDDITCQTPPRPDNIR---WHMVESASEELSARNLQ 884

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
             +            L    G     +L  R       T   + + +        P     
Sbjct: 885  RSPGDNWRVTSYSGLQQR-GHGIAQDLLPRLDIDAAGTAVSEKSEEPQLTPHQFPRGASP 943

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
                  S  E         + + R  L+LD    + +         +    I  +++  +
Sbjct: 944  GTFLH-SLFETLDFSQPVDSAWVREKLELDGFETWWEP--------VLTEWIDAILRAPL 994

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            N+    ++ L ++  D   E E   P    +       +   F    + + +    +   
Sbjct: 995  NETGISLSQLTER--DKQVEMEFYLPITKPLIASQLDTLIRQF----DSLSAGCPPLDF- 1047

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK-----------TGDNPKKETAQKLI 933
                  ++  G+ L GF D +   + G   + DYK           T         +   
Sbjct: 1048 ------LQVRGM-LKGFIDLVFRHQ-GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQEHRY 1099

Query: 934  DPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
            D Q  L   AL      +I      R    + Y+ L+   + +            EL  
Sbjct: 1100 DLQYQLYTLALHRYLRHRIADYDYERHFGGVIYLFLRGVDRDNPQQGIYTTRPDGELIA 1158


>gi|59800814|ref|YP_207526.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA 1090]
 gi|59717709|gb|AAW89114.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA 1090]
          Length = 1200

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 86/928 (9%), Positives = 214/928 (23%), Gaps = 107/928 (11%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
            +L  L      +L  +  D             A      + LAD         +    L 
Sbjct: 287  QLPCLDKDTHERLLKLSSDKLEAGLKKGKTPDAAVFAELQKLADF-------GRDLNALE 339

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKG 225
              +        L   ++L  +     +   E      +      +            +  
Sbjct: 340  EAEETTMIRLQLDLIEYLNSSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETPARAVAE 399

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT--EKSTNITS 283
                 +I     + P    +   +        +    D       +              
Sbjct: 400  NWEIALIDEFQDTDPLQYEIFQKIF-IARNRPLFLVGDPKQAIYSFRGADIYAYLQAAED 458

Query: 284  SNTTYSTHPQYSLAKLL-------DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            +   Y+    Y     L         L  +   ++ +G            +S        
Sbjct: 459  ARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQL 518

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
              +   D  +     +++  +D    E      EA    +  +    ++   + L+    
Sbjct: 519  RWLHENDNEKANKDVLRRRAADYCADEIARALNEASGGRLNFKDRPLQSGDIAVLVRTHN 578

Query: 397  NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
                       R   ++ +S    +  +  ++ L++L+    +      +  ++   +  
Sbjct: 579  EAVMISAALKKRQVQSVLLS-RESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSGIFG 637

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
            +   +               +         +     LD          +  +      E 
Sbjct: 638  YDAQQL----------HDFNQNESEILHWAESARTALDIWQKYGIFAAMQQFSQTHGIET 687

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            + L+      +      L              ++  W +  ++   N   D         
Sbjct: 688  RLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNGGDNRAIR---- 743

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--TVKPKIEKSSTLFILGTL 634
              E  + L  + +     G         +          +   +     ++  L      
Sbjct: 744  -LESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAELLAKAQLS 802

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ES    +    +      ++   T     L+  + +  +  TA+  +          +  
Sbjct: 803  ESEQKQYADEEMAERLRLLYVALTRAEEQLN--IYAAYSSDTADNPLAYLIEGLPQ-DSR 859

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
              +  T +  ++ I  +  R  +R+             +       +    D   +    
Sbjct: 860  ETVRRTYACEKDGITMLK-RNWRRVADNAPAGTDFTFTEDAPPPAAYRGNADQAAEFAAN 918

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQ------LINDPYAVYARRILKLDFIPHFKKD------ 802
              P+            + S   Q          P    A   +                 
Sbjct: 919  SIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPSETPTASDGISIH 978

Query: 803  --PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
              P  T  G   H I+ +    +  +   E   L+   +  +  +E   P +  +     
Sbjct: 979  DFPKGTQAGLCLHEILEDF---KFGQAAAEQETLIADKLKKYGFEEIWLPAVAEMAEACR 1035

Query: 861  H--------------------------------KISHSFLEHEEKIQSSIEKIFVNIPAK 888
                                             K    +L  ++     + +        
Sbjct: 1036 KTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRLPEVCRAAAE---- 1091

Query: 889  MAIESIGIH--LTGFADRIDLLKSGFVDITDYK-------TGDNPKKETAQKLIDPQLSL 939
              ++   ++  L GF D +     G + I DYK       T     +  A +    Q  +
Sbjct: 1092 -TLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQHYYLQALI 1150

Query: 940  EAAALKAGSFSQIDCRKVANLFYIRLKQ 967
             A A       +       ++ Y+ L+ 
Sbjct: 1151 YAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|319941481|ref|ZP_08015809.1| hypothetical protein HMPREF9464_01028 [Sutterella wadsworthensis
            3_1_45B]
 gi|319805101|gb|EFW01931.1| hypothetical protein HMPREF9464_01028 [Sutterella wadsworthensis
            3_1_45B]
          Length = 1191

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 93/1006 (9%), Positives = 241/1006 (23%), Gaps = 142/1006 (14%)

Query: 110  LELARLILIWRNKLPDII--KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
             EL   +     ++ +      L   S      + ++     + L  ++     E+    
Sbjct: 209  FELVENVDDLVEEVVNEFIRTSLLQLSEREDRAAISDPEKWIEILKQLM--AAPEDLVPS 266

Query: 168  DLHALKNEKYGMWWLLAADFLKIASKYWTE---------------RLVELNASSPVGYQI 212
             + +L   +         +F+K A K   +                L E     P   + 
Sbjct: 267  TIVSL--PESPELAAAFQNFVKEAPKRLAQKKCEARVKTFDDLLIELYERLRGDPADAES 324

Query: 213  ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA-NHPNGAIVLPGLDCHIPTAIW 271
                      ++     +++     + P    ++  +         V    D       +
Sbjct: 325  RAQAQRLAESIRSAFSVVLVDEFQDTDPIQYAVIKRLFLRKREPHPVWFVGDPKQAIYRF 384

Query: 272  NTIT-----EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                         ++ +   T  +     +  L        + V+             + 
Sbjct: 385  RGADLETYLRARRDVEALYQTAGSGRFRGVYALTTNYRSSPDLVRAFNAFWRTAPNPFLR 444

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
               ++L   +S      + +     I        +        +  +     +  +    
Sbjct: 445  EDLAYLEVKSSPKNLPLMQKRPDGAIMDAVPFEWVSSWQETPAQ-TAAERRQQQGIVLTD 503

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
            + +A+I A R     V        + +    G  L   L   I       +   ++ +  
Sbjct: 504  RITAMIEAGRRGELLVPCADEEASLAVAEKDGKRLRGVLPGDIAV----LVRTHDEGLTA 559

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A ++KH   +                 + +               +L   A   +   + 
Sbjct: 560  AEVLKHRGVRVQIRCDQNVCNTIEACEIGM---------------ILSAFAAPGDLKLLR 604

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              ++     D    +   +        L           G +  +   +  +T  +    
Sbjct: 605  AARTTRLIGDDLACLDDQERDETRRIALRGEFEYGARNWGTVGPAAALERLMTFCRT-AE 663

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                +          + L  L              A        R +     +     ++
Sbjct: 664  RLLPQANGERTLTNYRHLLELLHGAARIIPTPAGLAAWLAAEAKRPVSDFNRERLESDAN 723

Query: 627  TLFILGTLESRLLNFDTLILG-------GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
             + +     S+ L +  + L        G +     +         R ++     +  ++
Sbjct: 724  LVLVETIHSSKGLQYPIVFLPYTQSGSIGTHARCTSRTDDPKRSAQRCLEVRFEAEKPDQ 783

Query: 680  YIGQAAH-------DFEMANGTRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             + QA +          M    RHL      R     N     S   Q  L    T    
Sbjct: 784  RVNQAEYEEKVRVMYVAMTRAARHLCIIGEQRIKSAVNPDQWHSSTAQAHLFRALTGQLT 843

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY------------------- 770
              +      ++    L  ++  P ++  +          +                    
Sbjct: 844  PSRADILPAVERLAGLQSSSGTPLFRFTELGAAAAGAQSSLLTQGTVGESYTTAQSQTRR 903

Query: 771  ------SFSEIKQLINDP---YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL-I 820
                  SF+ I ++  D    ++ +  +  K   +      P     GT  H ++     
Sbjct: 904  SEWRTSSFTGITRMAEDDGPGFSTWYGQAEKPPLVDDILSFPKGAQAGTCLHEMMERADF 963

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
                + +       +   +    +  +LP             +    L  E     +++ 
Sbjct: 964  SLMASDDEKAAAARLALTVREVEKHLSLPEKEAASAAAGAAAMIRDLLNAEVAPGVTLKD 1023

Query: 881  I-----FVNIPAKMAI--------------------ESIGIH-------LTGFADRIDLL 908
            +        +   + I                    +   +        LTGF D +   
Sbjct: 1024 VPKSARSAELEFLIPISASLTAERLVSELKAMDPKYDFGTLRPEDLKGFLTGFID-LAFS 1082

Query: 909  KSGFVDITDYKTGDNPKKETAQK-----------LIDPQLSLEAAALKAGSFSQIDCR-- 955
              G   + D+K+     + +              L   Q  +   AL+     ++     
Sbjct: 1083 AGGRFYVLDWKSNKISPEASGYTEKAMSAEMDVHLYRLQYLIYWVALRRFLQVRLGAHWR 1142

Query: 956  --KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
               +    Y+ L+          + +    D +  + ++ + ++  
Sbjct: 1143 DEMIGGAIYVFLRGVRAGTTTAANPQGIVFDPVRPEVIRRMDDLFA 1188


>gi|226198555|ref|ZP_03794121.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|225929298|gb|EEH25319.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           Pakistan 9]
          Length = 1114

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 84/881 (9%), Positives = 191/881 (21%), Gaps = 65/881 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W          + +          A D     +  W   L EL+ S        L  
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 217 AEA------EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
           A A                + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----K 386
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPCLAP 381

Query: 387 KKSALITADRNLARRVK-------LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               +   D   A  +               I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                 +   ++             + A  A   +     +     +             
Sbjct: 442 DVGAPELVEWLR-------------ADAVAARYGIDATALETVQTWLAASGARRGLAPDA 488

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               +      R +  D    + L   +     P+ T+     +  G   +         
Sbjct: 489 AEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTD 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC------------------IKAN 601
            L        R L    + +      + F       +                     A 
Sbjct: 549 DLDGFARRIARDLTPQGWGDVFADALARFFDSGPAVADALSGVRDALDAMLAAMAEGAAG 608

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           A     ++   +      P         +        R L +  + L G+++GV P    
Sbjct: 609 AALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLAR 668

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            + F    + + L  +           D  +A   R LI        +   +    L   
Sbjct: 669 ADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDE 728

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
           L+                     R          +      P         S + + +L+
Sbjct: 729 LLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLL 788

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
            +     AR           ++     D    + +    L++ R+     +    +    
Sbjct: 789 AEGARAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVD-T 847

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
           +           +      L  + + +         +    
Sbjct: 848 EPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASP 888


>gi|134299275|ref|YP_001112771.1| UvrD-like DNA helicase, C terminal [Desulfotomaculum reducens MI-1]
 gi|251764523|sp|A4J4E3|ADDA_DESRM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|134051975|gb|ABO49946.1| DNA helicase/exodeoxyribonuclease V, subunit A [Desulfotomaculum
            reducens MI-1]
          Length = 1244

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 100/912 (10%), Positives = 249/912 (27%), Gaps = 149/912 (16%)

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIAS--------------KYWTERLVELNASSPVGYQ 211
             EDL +L+         L  +F+++                +++   ++    +    ++
Sbjct: 329  LEDLRSLQP-LIADLAKLTIEFMELYQKKKQAKGLVDFGDLEHYCLTILLDKENDAAEFR 387

Query: 212  IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
             + +  E +         +++            ++  V+   N  +V    D       +
Sbjct: 388  PSAVAIELQQQYAE----VLVDEYQDINAVQETILRLVSKKNNRFMV---GDVKQSIYRF 440

Query: 272  NTITEKSTNITSSNTTYSTHPQ---------------------YSLAKLL--DFLDIKRE 308
                 K     S     + + Q                     +   +++     +I  +
Sbjct: 441  RLAEPKLFLSKSELYANTDNCQGTRIGLSKNFRSRLEVVNAVNFIFRQIMTKKAGEITYD 500

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF-SDVALIEADNE 367
            +++ L   ++      +  +   +     D ++  + E    + ++         + D++
Sbjct: 501  ELEELHCGADYPQAEDVKTATGPVEVYLIDRKDAQLEEQNTDSAEEKLTDGEEQEDLDSD 560

Query: 368  REEAISIAIALRMSLD-----------------------ENKKKSALITADRNLARRVKL 404
            + EA  I   ++  +                          +    L+ A    A     
Sbjct: 561  QAEARLIGRRIQAMVKGTDKAMGPEFKVWDKEIGKYRPVSYRDIVILLRATTGRANTFLE 620

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
            EL   G+      G      +      SLL  I      + +A +++ P+      +   
Sbjct: 621  ELRTMGVPTYAEVGTGYFEAVEVETFLSLLKIIDNPRQDVPLAGVLRSPVVGLKASDLAE 680

Query: 465  SRAKNALELVALRGNKNSYDIMD---------LKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             R  +            +   +          L+ L   R   +++      W       
Sbjct: 681  IRLCSKEGDFYDAVRIAAAADLGDVAVTLTKFLRQLENWRSRARRDTLADLIWLLYRETG 740

Query: 516  DKELAVLLVD-HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
              +    +V     Q    ++ ++  +        +  +    V  L++   D       
Sbjct: 741  YYDYVGGMVGGTQRQANLRVLYHRAKQFEATSFRGLFRFL-RFVERLKDSGSDLGAARSL 799

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
               E+  + +S   SK +E    +    +     +  L     +  ++     +  LG+ 
Sbjct: 800  SENEDVVRIMSIHKSKGLE-FPVLFVAGLGKRFNMMDLNKDMLMHKELGLGPQIIHLGSR 858

Query: 635  ESRL-------------------LNFDTLILGGLNEGVWPKNTAKN------PFLSRVMQ 669
             S                     +    + L    E +      ++       + +   Q
Sbjct: 859  VSYPSLPKLLIKQQIRKESVAEEMRVLYVALTRAREKLILVGAVRDLEKSLEKWCTSTYQ 918

Query: 670  SDLNLKTAEKYIGQAAHDFEMANGTRH--------LIYTRSLRENNIPTIASRW-LQRLL 720
            +   L  AE    +   D+      RH        L  T     + + T  S W L    
Sbjct: 919  AGWTLPDAELMAAKCYLDWLCPAIARHHNGHELRSLAKTEGQPFSEVATDPSAWQLVFQA 978

Query: 721  VLGGTDFFDNLKKRGQCYLDW---TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            +    +     K++ Q  L         +        +R   +    A+  T        
Sbjct: 979  LKDIKNQTQENKEQSQGLLVKIKDMEPFEDAGLIKEVERRLSWQYPRAEVTTRPAKAAVT 1038

Query: 778  LINDPYAVYARRILKLDFIPH----------FKKDPDRTDRGTLFHNIITELIKKRINKN 827
             +   +   AR+   +                 K     +RG+  H ++  +       +
Sbjct: 1039 EVKHKFDELARQEAGVMSYRPKISGRPRFLQQDKGLTPAERGSAIHLVMQHIPLD-KLPD 1097

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
               +  L++ +I            I+         I+  F     +      K+   +P 
Sbjct: 1098 EEGVQVLLQNLIQKEILLPQQAAAINPN------HITGFFASSIGQRVLQAPKVERELPF 1151

Query: 888  KMAIESIG------------IHLTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLID 934
             +A+ +              + + G  D +     G   + DYK+    P +++      
Sbjct: 1152 SLALPATEVYQELPECGDEMVLVQGVIDCLVDEGDG-FLLIDYKSDAVYPGQDSPVDRYR 1210

Query: 935  PQLSLEAAALKA 946
             Q++L A A++ 
Sbjct: 1211 GQINLYARAVQD 1222


>gi|254197457|ref|ZP_04903879.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           S13]
 gi|169654198|gb|EDS86891.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           S13]
          Length = 1114

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 79/881 (8%), Positives = 191/881 (21%), Gaps = 65/881 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKW-------EDLHAL--KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             +W       E + AL       G        +     +     L +        +   
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 214 LMRAEAEHLMKGT---KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
               + + + +        + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARVKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----K 386
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPCLAP 381

Query: 387 KKSALITADRNLARRVK-------LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               +   D   A  +               I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                 +   ++             + A  A   +     +     +             
Sbjct: 442 DVGAPELVEWLR-------------ADAVAARYGIDATALETVQTWLAASGARRGLAPDA 488

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               +      R +  D    + L   +     P+ T+     +  G   +         
Sbjct: 489 AEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTD 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC------------------IKAN 601
            L        R L    + +      + F       +                     A 
Sbjct: 549 DLDGFARRIARDLTPQGWGDVFADALARFFDSGPAVADALSGVRDALDAMLAAMAEGAAG 608

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           A     ++   +      P         +        R L +  + L G+++GV P    
Sbjct: 609 AALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLAR 668

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            + F    + + L  +           D  +A   R LI        +   +    L   
Sbjct: 669 ADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDE 728

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
           L+                     R          +      P         S + + +L+
Sbjct: 729 LLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLL 788

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
            +     AR           ++     D    + +    L++ R+     +    +    
Sbjct: 789 AEGARAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVD-T 847

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
           +           +      L  + + +         +    
Sbjct: 848 EPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASP 888


>gi|288575116|ref|ZP_06393473.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570857|gb|EFC92414.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 671

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/518 (10%), Positives = 126/518 (24%), Gaps = 85/518 (16%)

Query: 188 LKIASKYWTERLVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
           +      +T+ L E  A            +     +     +     I++          
Sbjct: 186 MAELYSLYTKSLKEQGAFDFDDLIVMPLHLMSTDRDILKKERDRLDWILVDEYQDVNRPQ 245

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             L+  +A   +   V+   D       W             +                 
Sbjct: 246 FALLRLLAG--DSPNVMAVGDPDQSIYGWRGADMSVILGFERHFP--------------- 288

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                      G+    +              ++    N +  E ++   +     + ++
Sbjct: 289 -----------GSKVILLEQNYRSTETILDAANSVIGNNVNRPEKRLWTARSGGEPINVV 337

Query: 363 EADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAGIP 420
              +ER EA  ++  +   L    +    A++     L+R  + E  + G+   +  G  
Sbjct: 338 TLGDERAEARYVSDVVEELLSLGYRYTDMAVLYRMNALSRNFEQEFVKRGLPYRVVKGTA 397

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
                      S L       D  A+A +   P                       RG  
Sbjct: 398 FYDRKEIKDAISYLRLAVNPRDASALARVANVP----------------------PRGLG 435

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                     L       +     +      L  +  +    L  H++  I         
Sbjct: 436 AKGLESVESYLSTHASEARTTWCRIADGGCGLRGKGDKGIRDLARHMISLID-------- 487

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                    ++   +  +  +      E           E     +  S   E+   + A
Sbjct: 488 -----IGSDLNRAVEYIMDVIGYGSYLEKGYPDQFEERRENVMELTSISPGSESLEDVLA 542

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA- 659
               + D           +   +    + +     ++ L F  + + G+ +G++P   + 
Sbjct: 543 EIALYTD-----------QEVDDIPDGISLSSLHAAKGLEFPVVFIVGMEDGIFPHGRSL 591

Query: 660 ---KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
              ++          + +  AE+ +   +  F    G+
Sbjct: 592 DGGRDELEEERRLCYVGMTRAEERLYLTSSRFRRLFGS 629


>gi|262195017|ref|YP_003266226.1| exodeoxyribonuclease V [Haliangium ochraceum DSM 14365]
 gi|262078364|gb|ACY14333.1| Exodeoxyribonuclease V [Haliangium ochraceum DSM 14365]
          Length = 1274

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 93/981 (9%), Positives = 212/981 (21%), Gaps = 114/981 (11%)

Query: 19  REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78
            E+  AL      E  R   L P   A+  I VP       ++       G  + +    
Sbjct: 11  EELCRALCQELAAERRRRRQLLP---ATAHIVVPNHHITAYVKLAVANQLGVAANL--DF 65

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
           + +   + E    +      L+ P  +   L  LA   L+  ++L  +   L        
Sbjct: 66  RFISSFIAECVPDERRDLRVLDTPHLHALLLSVLADEALLAEDELAPVAAYLGAAGGEQD 125

Query: 139 PISPANAIWLAKNLADIIDIIETEEKK----WEDLHALKNEKYGM---WWLLAADFLKIA 191
            +       LA+ LA +              W +  AL + +      W       +  A
Sbjct: 126 AVDLRR-FQLAQQLATLFSDYRLSRGDLLRAWREGPALGDTRSAATEIWQRRLWLAIFDA 184

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
            +    R+ E      V           + L       +I  G +    A  +++  ++ 
Sbjct: 185 ERGLLARIREETGVHWVHGPELFDEYLIKDLAVPRSVHLI--GFSYLPWAHHKVLERLSR 242

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL-----LDFLDIK 306
             +  +            +      +        +      Q S   L     L      
Sbjct: 243 FISVHVYAFNPCMEFWEDLRAGWETRL-AGRQLKSRKGDAVQLSFEDLDDTPALRLWGRP 301

Query: 307 REDVKRLGNVSNEMYGRSMVIS-------------------------------------- 328
             +  R+ +   +    +  +                                       
Sbjct: 302 GRENVRILDEQTQCDFDARFVDPAAPEAEDAAAADAADAASSAESQAAAPDLFAGLGLGA 361

Query: 329 ----------KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI-- 376
                      +                   P +      V ++   + + E   I    
Sbjct: 362 AAAEPPVSLLAALQRDILFRHPARRAGAPDAPALVAGDRSVQILGCPSIQRELEIIGNEI 421

Query: 377 --ALRMSLDENKKKSALITADRNLARRVKLE----LTRFGINIDISAGIPLSTTLHSSIL 430
              +           AL+    +                GI    +       +     L
Sbjct: 422 WSLMARDPGLRFNDIALLVGRADQELYQAHVPGVFAELHGIPYHFADAAVTGESRMVEAL 481

Query: 431 TSLLNAIFKLNDFMAIATLVKHPLA---KFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             LL+  F       +  L+ HP                    L +V     ++      
Sbjct: 482 GLLLDLPFGRFTRPELLRLLTHPAVLARYPDVDPDDWVHWSERLGIVHGADTRDHAATYI 541

Query: 488 LKSLVLDRIATQKNNTHVPHWQSR--------LSEEDKELAVLLVDHILQCITPLVTYKT 539
            + L   +   ++          R        +         L  D +       +  ++
Sbjct: 542 ERDLFNWQQGIRRLALGAFMAGERSGELRPFAMDGSAYLPEELPADLLPSAARFALVARS 601

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
                                   +         +           ++ +          
Sbjct: 602 LIADARYCQQAEKPLARWRIFFDLMVDSYLAPQNDEDERNLAACREAIATLAGSDIDGRP 661

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                  +++   +     +     +  + +   L  R + +  + L GL EG +P +  
Sbjct: 662 VRYRIACELLRARLGKLRGERGELLAHGVTVAPLLPMRPIPYRVVFLAGLGEGHFPASER 721

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN--NIPTIASRWLQ 717
           ++P   R  +      +  +          + +    L  +   R+         S  + 
Sbjct: 722 ESPLDLRAAKRRRGDVSPRERDRYL-FLETLLSARERLYLSYVSRDERTGETLQPSPVVL 780

Query: 718 RLLVLGGTDFFDN------------LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
            L  L  + +                +   + +      +  +  +     P P P   A
Sbjct: 781 ELDHLVRSGYTGEGEGTSIAIDHPLRRYDPRYFPALFATIGKSDDRSKSAAPAPTPAATA 840

Query: 766 QPRTYSFSEIKQLIN-DPYAVYARRILKLDFIPH---FKKDPDRTDRGTLFHNIITELIK 821
                        ++  P A     +L L         +        G L H +      
Sbjct: 841 TISDADADAAAGYLSVAPAARRQAHVLALRRHLEHTLREHGHGMPSVGELRHALSGPRHA 900

Query: 822 KRINKNTPEINHLMKQ-------IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
               +                        E              +  ++   FLE   + 
Sbjct: 901 ALRERLGWTALEAATAPPPRVELAASPTNENREPGDGAADEVVPISLRMLRRFLETPLQA 960

Query: 875 QSSIEKIFVNIPAKMAIESIG 895
            ++             +    
Sbjct: 961 WAAAVLRLRESELDDPVAQAD 981


>gi|271969588|ref|YP_003343784.1| hypothetical protein Sros_8396 [Streptosporangium roseum DSM 43021]
 gi|270512763|gb|ACZ91041.1| hypothetical protein Sros_8396 [Streptosporangium roseum DSM 43021]
          Length = 293

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 64/189 (33%), Gaps = 13/189 (6%)

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
           P   +  +  + + S +   +  P       + +           +    G   HN +  
Sbjct: 5   PLEGMPRRLYSCTPSRLNTWLECPRRHRFTYMDRPSPQKGPPWAHN--SVGVSVHNALAA 62

Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
             ++   + TP    ++         +          WR    +++  ++        S 
Sbjct: 63  WWREPYARRTPVTAAVLVTSGW--INEGFRDAEQSAAWRDRAREMTAGYVASL---DPSD 117

Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQL 937
           E + V     +A ++  I ++G  DR+D      + + DYKTG  P   + A+  +   L
Sbjct: 118 EPVGVER--TVAAKTSVIAVSGRVDRLDRRGD-ELVVVDYKTGRRPLTADDARSSLA--L 172

Query: 938 SLEAAALKA 946
           ++ A A   
Sbjct: 173 AVYAVASSR 181


>gi|66968458|gb|AAY59608.1| ATP-dependent deoxyribonuclease chain-like [Listeria seeligeri]
          Length = 430

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 107/359 (29%), Gaps = 29/359 (8%)

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
             L  +  L +     +       LA++   ++ EE    DL     +            
Sbjct: 97  AALDQKEKLKVFSRATSRKGFYSELANLFKEMKQEEVSITDLEE-SAKMLPTSVNNKVHD 155

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           + +  + + E L            + L+  +        +  III G          ++ 
Sbjct: 156 ISLIYQKYEELLA--GKFLENEDYLKLLADKIAESDYLNQTEIIIDGFNSFSKQELTVIE 213

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +    +   +   L+      I   + E S    S+         YSL +     +I  
Sbjct: 214 KLMQKCDKLTISLTLNV---PEIERGLEEFSMFRASTEAY------YSLLETAKLNNIPV 264

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
           E++K L             ++  +                   + Q   +++ + +A+N+
Sbjct: 265 EEIKLLLENKRAKTPPLEFLANVWGQNKF-------------ASFQGETTNLNIHQANNK 311

Query: 368 REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
           R E   IA  +R       +    A++T +  +     +  +  + I I I     ++  
Sbjct: 312 RAEIEGIAREIRGLTSNGYRYKDIAILTRNLGDYDVLCETVMEDYNIPIFIDKKRAMAKH 371

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG-FPEKYLSRAKNALELVALRGNKNS 482
                + S L+AI     +  I   VK             + R  + LE   L     +
Sbjct: 372 PFIEFIRSSLDAIQFNWKYEPIFQAVKTEFFFDSAADAADMRRKSDILENYVLENGIQN 430


>gi|66968456|gb|AAY59607.1| ATP-dependent deoxyribonuclease chain-like [Listeria seeligeri]
 gi|68166251|gb|AAY88053.1| ATP-dependent deoxyribonuclease chain-like protein [Listeria
           seeligeri]
          Length = 430

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 107/359 (29%), Gaps = 29/359 (8%)

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
             L  +  L +     +       LA++   ++ EE    DL     +            
Sbjct: 97  AALDQKEKLKVFSRATSRKGFYSELANLFKEMKQEEVSITDLEE-SAKMLPTSVNNKVHD 155

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           + +  + + E L            + L+  +        +  III G          ++ 
Sbjct: 156 ISLIYQKYEELLA--GKFLENEDYLKLLADKIAESDYLNQTEIIIDGFNSFSKQELTVIE 213

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +    +   +   L+      I   + E S    S+         YSL +     +I  
Sbjct: 214 KLMQKCDKLTISLTLNV---PEIERGLEEFSMFRASTEAY------YSLLETAKLNNIPV 264

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
           E++K L             ++  +                   + Q   +++ + +A+N+
Sbjct: 265 EEIKLLLENKRAKTPPLEFLANVWGQNKF-------------ASFQGETTNLNIHQANNK 311

Query: 368 REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424
           R E   IA  +R       +    A++T +  +     +  +  + I I I     ++  
Sbjct: 312 RAEIEGIAREIRGLTSNGYRYKDIAILTRNLGDYDVLCETVMEDYNIPIFIDKKRAMAKH 371

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG-FPEKYLSRAKNALELVALRGNKNS 482
                + S L+AI     +  I   VK             + R  + LE   L     +
Sbjct: 372 PFIEFIRSSLDAIQFNWKYEPIFQAVKTEFFFDSAADAADMRRKSDILENYVLENGIQN 430


>gi|324114889|gb|EGC08855.1| exodeoxyribonuclease V [Escherichia fergusonii B253]
          Length = 1183

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 95/899 (10%), Positives = 220/899 (24%), Gaps = 104/899 (11%)

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            + D I+    +   +  L           A   ++        R  EL     +    A 
Sbjct: 309  LFDAIDQLLAEPLSIRDLVIT-------RALAEIRETVAREKRRRGELGFDDMLSRLDAA 361

Query: 215  MRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
            +R+E        ++      +I     + P   R+   + +      +L   D       
Sbjct: 362  LRSESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHQQPETALLLIGDPKQAIYA 421

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEMYGRSMVISK 329
            +      +     S      H  Y+L         +     K      +    R +    
Sbjct: 422  FRGADIFTYMKARS----EVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFVP 477

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-- 387
                     +      E +                D +   A   A+ +R  L   ++  
Sbjct: 478  VKSAGKNRGLHFAVNGEKQPAMKMWLMDGEYCSVGDYQSTMAQVCAMQIRDWLQAGQRGD 537

Query: 388  ---------------KSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILT 431
                             +++   R  A  ++  LT   I  + +S    +  TL +  + 
Sbjct: 538  ALLMNGDTSRPVRASDISVLVRSRQEASLIRDALTLLAIPSVYLSNRDSVFETLEAQEML 597

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE----------LVALRGNKN 481
             +L A+        + + +   +      +                         R    
Sbjct: 598  WVLQAVMTPEREDTLRSALATSMMGLNALDIENLNTNETAWDAVVEEFDGYRQLWRKRGV 657

Query: 482  SYDIMDLKSLV---------LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
               +  L S                   +  H+     +   + +    L+       + 
Sbjct: 658  MPMLRALMSARNIAENLLATAGGERRLTDILHISELLQQAGTQLESEHALVRWLSQHILE 717

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVT--------CLQNVCLDEHRKLPNLWFEEEGKTL 584
            P     + +     +  +     +  +         L  +     +        +  + +
Sbjct: 718  PDSNAASQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRQSFEAM 777

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
              L                E + ++   +        +  +  +   G  +       + 
Sbjct: 778  LDLSEAKESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGPTDVHQSA 837

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
            +   L +G           +  +   D+  +T  +        + M       +  R+L+
Sbjct: 838  LGRLLQKGEPQDAAGLRACIESLCDDDITCQTPPRPDNIR---WHMVESASEELSARNLQ 894

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
             +            L    G     +L  R       T   + + +        P     
Sbjct: 895  RSPGDNWRVTSYSGLQQR-GHGIAQDLLPRLDIDAAGTAVSEKSEEPQLTPHQFPRGASP 953

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
                  S  E         + + R  L+LD    + +         +    I  +++  +
Sbjct: 954  GTFLH-SLFETLDFSQPVDSAWVREKLELDGFETWWEP--------VLTEWIDAILRAPL 1004

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            N+    ++ L ++  D   E E   P    +       +   F    + + +    +   
Sbjct: 1005 NETGISLSQLTER--DKQVEMEFYLPITKPLIASQLDTLIRQF----DSLSAGCPPLDF- 1057

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK-----------TGDNPKKETAQKLI 933
                  ++  G+ L GF D +   + G   + DYK           T         +   
Sbjct: 1058 ------LQVRGM-LKGFIDLVFRHQ-GRYYLLDYKSNWLGEDSSAYTQQAMAAAMQEHRY 1109

Query: 934  DPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
            D Q  L   AL      +I      R    + Y+ L+   + +            EL  
Sbjct: 1110 DLQYQLYTLALHRYLRHRIADYDYERHFGGVIYLFLRGVDRDNPQQGIYTTRPDGELIA 1168


>gi|222871833|gb|EEF08964.1| predicted protein [Populus trichocarpa]
          Length = 376

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 100/296 (33%), Gaps = 10/296 (3%)

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
            +      V +I +    +EA + A  L   L+E ++  AL+  DR +ARR +  L R G
Sbjct: 90  ELPAERPRVRVIGSARFEDEAAAAADQLVQWLNEGRRHVALVAHDRVVARRARALLARAG 149

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
             +    G  LSTT  ++ L    + + +  D  A+  L+K P      P      A  A
Sbjct: 150 APVRDETGWKLSTTRAAAALMRWFDVLARDGDSAALLDLLKSPFC---LPAFEHRGAAIA 206

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
           L    +R    +     L  L  +R                 + E  +  + +       
Sbjct: 207 LMERRIRRAVVTGGWARLAHLFAERERAAGA------LVDAETMEASDAELQIRAAARTL 260

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
           I  L               +  W       L  + +       +   +            
Sbjct: 261 IATLADEAAQWPRGLAQQPLHVWLGRLDAMLDTLDMRVALAADDAGRQLLDALAKLGDLP 320

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETV-KPKIEKSSTLFILGTLESRLLNFDTLI 645
             ETGS    N  E+  +++ L++     +P  +  S + IL    +R+  FD ++
Sbjct: 321 DDETGSHATLNQQEFRAMLSALLESVAYKEPSAQSQSRITILPLNGARMRRFDGVV 376


>gi|262280866|ref|ZP_06058649.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257766|gb|EEY76501.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 687

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/426 (12%), Positives = 116/426 (27%), Gaps = 52/426 (12%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    Y     L    + I   T+RA  E+ +   +  G ++  L    +       
Sbjct: 65  KTIVARAAYLIDQGLPANQIQILTFTRRAASEIVARVEQHVGAQAKGL-RASTFHTFCMY 123

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +          + +    L + RL+     K  D +     E       +      
Sbjct: 124 LLRRNPQAFGLNQFSIIDRDDQLLMFRLLRG---KDKDNVLPKAAELCDLYSYARNTQTK 180

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
           L++ L   +      + +  DL          +     +            L   +  S 
Sbjct: 181 LSEALIKQLPEAYEHKTQIADL-------MKTYEQRKRE---------RNFLDYDDILSI 224

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
           V   +    A    +  G    +++     + P    L+  +        +    D    
Sbjct: 225 VAVHLQNSEALTNWV-AGFCQALLVDEMQDTNPLQWALLQPLIGKVK---LFCVGDDAQS 280

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +     ++ +                  ++  LD+     + + ++SN +   S + 
Sbjct: 281 IYGFRGADFENIHSFKERIPD---------AIIHTLDLNYRSTQEILDLSNWLLANSPID 331

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--N 385
            +  L       +                    L    NE EEA  IA  L     +  +
Sbjct: 332 YQKQLQAHRGQGQKPQ-----------------LHLFGNEYEEANWIAQDLITRHQQGAS 374

Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                ++      AR ++       +      G+ L  + H   + SLL  +   +D +A
Sbjct: 375 WHDHMILVRSGYSARYLEGAFIAAELPYRFIGGVKLLESAHVKDVLSLLRIVSNPHDDLA 434

Query: 446 IATLVK 451
               + 
Sbjct: 435 WMRFLT 440


>gi|111225411|ref|YP_716205.1| hypothetical protein FRAAL6067 [Frankia alni ACN14a]
 gi|111152943|emb|CAJ64691.1| hypothetical protein FRAAL6067 [Frankia alni ACN14a]
          Length = 269

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 10/169 (5%)

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
           +  +    + S +    + P       + +                G   HN +    ++
Sbjct: 1   MPRRLFACTPSRLAAFEDCPRRYRMIYLDRPRPPKGPPWAHT--SFGVSVHNALRRWWEE 58

Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
              + TP     + ++     ++    P     WR     +   ++E    +  + E   
Sbjct: 59  PHQRRTPLRAAELLRLGW--IDEGFRDPEQSQHWRERAVGMVRGYVE---GLDPAAEPRG 113

Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
           V        E++    +G  DR+D  + G + + DYKTG  P  +   +
Sbjct: 114 VERSVAARTEALAF--SGRIDRLD-DRDGELVVVDYKTGRRPVTDDDAR 159


>gi|215428674|ref|ZP_03426593.1| putative ATP-dependent DNA helicase [Mycobacterium tuberculosis T92]
 gi|289751889|ref|ZP_06511267.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T92]
 gi|289692476|gb|EFD59905.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T92]
          Length = 131

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
             G ADR++   +G + I D KTG  P  +   +    QL++   A+  G     D    A
Sbjct: 2    RGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGA 60

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013
             L Y+       +     D        L+  +      +V  L        FI+   
Sbjct: 61   RLVYVGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQFIARRN 110


>gi|299771676|ref|YP_003733702.1| putative ATP-dependent DNA helicase [Acinetobacter sp. DR1]
 gi|298701764|gb|ADI92329.1| putative ATP-dependent DNA helicase [Acinetobacter sp. DR1]
          Length = 659

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 82/729 (11%), Positives = 178/729 (24%), Gaps = 132/729 (18%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    Y     L    + I   T+RA  E+ +   +  G ++  L    +       
Sbjct: 37  KTIVARAAYLIDQGLPANQIQILTFTRRAASEIVARVEQHVGAQAKGL-RASTFHTFCMY 95

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +          + +    L + RL+                           N + 
Sbjct: 96  LLRRNPQAFGLNQFSIIDRDDQLLMFRLLRG---------------------KDKDNVLP 134

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER--LVELNAS 205
            A  L D+       + K  +    +           AD +K   +   ER  L   +  
Sbjct: 135 KAAELCDLYSYARNTQTKLSEALIKQLPDAYEHKNQIADLMKTYEQRKRERNFLDYDDIL 194

Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
           S V   +    A    +  G    +++     + P    L+  +        +    D  
Sbjct: 195 SIVAVHLQNSEALTNWV-AGFCQALLVDEMQDTNPLQWALLQPLIGKVK---LFCVGDDA 250

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +     ++ +                  ++  LD+     + + ++SN +   S 
Sbjct: 251 QSIYGFRGADFENIHSFKERIPD---------AVIHTLDLNYRSTQEILDLSNWLLAHSP 301

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
           +  +  L       +                    L    NE EEA  IA  L     + 
Sbjct: 302 IDYQKQLQAHRGQGQKPQ-----------------LHLFGNEYEEANWIAQDLITRHQQG 344

Query: 386 KKKS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                  ++      AR ++       +      G+ L  + H   + SLL  +   +D 
Sbjct: 345 ASWYDHMVLVRSGYSARYLEGAFIAAEVPYRFIGGVKLLESAHVKDVLSLLRIVSNPHDD 404

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
           +A    +       G  +   S+    L  +     + +                     
Sbjct: 405 LAWMRFLT---LWDGIGDVGASKLAQELMGIVDVEERCNR-------------------- 441

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                  R  +   +  ++L           +            L++    +      + 
Sbjct: 442 -----LERHGKVPLQAILILKQ---------LDVLQQHVEASIGLALDALGEQLEQNYKT 487

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                  K  +L  +     L+   + + E         I   +I            K  
Sbjct: 488 KDWSRRLKDFDLVKQ-----LARKHASLGEFLEEYVLEPISVSEI-----------EKAA 531

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
               + ++    ++        +  ++   +P   A+  F              +    +
Sbjct: 532 DQDLVTLITIHSAKGAEQKVCYVPHVSPNQYPYARAQGDF--------------DDVEEE 577

Query: 684 AAHDFEMANGTR-HLIY------TRSLRENNIPTI--ASRWLQRLLVLGGTDFFDNLKKR 734
               +         LI       T S    +       S +L  L              +
Sbjct: 578 RRVLYVALTRAENELILTKQNLNTWSEDNYDEQGRKIESYFLNDLPAHLVQAKIHRQVPQ 637

Query: 735 GQCYLDWTR 743
                 W+R
Sbjct: 638 PFAKKQWSR 646


>gi|294668891|ref|ZP_06733981.1| exodeoxyribonuclease V, beta subunit [Neisseria elongata subsp.
            glycolytica ATCC 29315]
 gi|291309188|gb|EFE50431.1| exodeoxyribonuclease V, beta subunit [Neisseria elongata subsp.
            glycolytica ATCC 29315]
          Length = 1189

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 88/810 (10%), Positives = 194/810 (23%), Gaps = 59/810 (7%)

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
            A +   ++  L  A +++         +I     + P    +         G  +    D
Sbjct: 370  ALTAGAHRDKLAEAVSQNW-----RVALIDEFQDTDPLQYEIFRRTFAAH-GNPLFLVGD 423

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +      +    +++T       Y+LA       +  +++ RL       +  
Sbjct: 424  PKQAIYGFRGADIYAYLQAAADTPVH----YTLAHNYRSHSLLIDNIGRLFQQKERPFVL 479

Query: 324  SMVISKSFLPPDTSDMRNTDILENK---IPNIQKCFSDVALIEADNEREEAISIAIALRM 380
              +   +   P  +          K   + +  +   +   + +      A  IA  +  
Sbjct: 480  EHIGYPAVTAPRGTSRLTPPQAALKIRWLNDGGEPDPNKETLRSRAAEYCADEIAALINQ 539

Query: 381  SLD---------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            + +             + A++    N    +K  L   GI         +     +  L 
Sbjct: 540  AAEGRLNYKNTPVEAGQIAVLVHSHNQGAMIKRTLAERGIPSVSIERESVFAGEEAKALA 599

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL--- 488
            +LL    +      +  ++   L      + +      AL    +   ++   I      
Sbjct: 600  ALLGFWLEPRRTEPLRFILAGTLFGQTAEQLHALNRDEALLSGYIAAAEDFLQIWQRQGI 659

Query: 489  -KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
              +L             +     R      +LA LL D      TP   ++         
Sbjct: 660  YAALTAFARRYGLEGRLLAADGGRTLTNFWQLAELLADENENSHTPAALHQWLLAKIQDP 719

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
                +      +    V +        L +       S   ++       I  +     +
Sbjct: 720  PQNENAVLRLESDEALVKIVTIHASKGLQYPFVFCPFSWDTAEKKNEAWHI-LHRENGSE 778

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR- 666
            ++      E  + +++       L  L   L   +  ++                 L   
Sbjct: 779  LLADSQLDEADREQLDDEDLGERLRLLYVALTRAEEQLVIYAARCSSTPRNTFAYLLEGL 838

Query: 667  ------VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
                    +     +   +      +     N     I  +     +      R      
Sbjct: 839  PSDGRLKTRQAYEAEKENQAEMLRRNWLRWINAAPEGIEWQEGAPLSAAVQTRRRSGTEY 898

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY---KRPKPFPPLEAQPRTYSFSEIKQ 777
                         R   +   TR L +   +P      +P   P   +        +   
Sbjct: 899  RAAVYPPRRFSFIRHTSFTGLTRHLGHGPTRPDDDDGLQPALDPAELSAGSLLPLPDTDN 958

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
               D +         +      +K       G    NI   L K  I     +   LM  
Sbjct: 959  APRDIFHFPRGAAAGICLHEILEKHDFARPAGQQRENIAAILEKHGIETEWLDAVCLMAD 1018

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHK---ISHSFLEHEEKI------QSSIEKIFVNIPAK 888
               +     +    +  +              F   E          + + +       +
Sbjct: 1019 --QTAVAPLHGGTTLSALPAARRKAEMGFVMHFDRLELGRLKNHLAAAGLPEACTAAAER 1076

Query: 889  MAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQL 937
            +   ++   L GF D   LL  G   I DYK+                +  A      Q 
Sbjct: 1077 LDFPTLQGFLNGFIDLTCLLPDGTACIIDYKSNHLGMDTDGYAQSALDQAVADHHYYLQA 1136

Query: 938  SLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
             + A A       +    +   + Y+ L+ 
Sbjct: 1137 WIYALAAARHLKQRGQIPRTVRIRYLFLRG 1166


>gi|284992637|ref|YP_003411191.1| hypothetical protein Gobs_4258 [Geodermatophilus obscurus DSM
           43160]
 gi|284065882|gb|ADB76820.1| conserved hypothetical protein [Geodermatophilus obscurus DSM
           43160]
          Length = 287

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 56/187 (29%), Gaps = 11/187 (5%)

Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
            P +  +    + S++    + P       + +           +    G+  H  +   
Sbjct: 8   MPGMPRRLFPATPSKLAAFSDCPRRYRHAYVDRPTPARGPAWAHN--SVGSAVHAALRSF 65

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
            +  +   T      +   + S     +        WR      +    ++   +  + E
Sbjct: 66  WELPLAGRTAGSARQLLYGVWSTAGFRDAEQSER--WRARA---AGWLTDYVTGLDPADE 120

Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
            +          E   + L+G  DRID      + + DYKTG +   +   +   P L+ 
Sbjct: 121 PVGTERQVAATTE--RLALSGRVDRIDQRGD-ELVVVDYKTGRSVCTDDEARG-SPALAA 176

Query: 940 EAAALKA 946
               ++ 
Sbjct: 177 YVLGVRR 183


>gi|167772669|ref|ZP_02444722.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
 gi|167665147|gb|EDS09277.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
          Length = 866

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/501 (9%), Positives = 120/501 (23%), Gaps = 64/501 (12%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L   +          P     +     T RA +E+     E    ++     + ++    
Sbjct: 52  LARRVANLIVSGAAAPE---EILCLTFTNRACREMIERI-ETVAGEAARDVAVHTVHSFC 107

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                             +++ R   +             + + L  E          + 
Sbjct: 108 ARMLR-------ETPAARTDLGRDFTVCDAADALEIVRLAVERTLGREIDGRSAQILLDF 160

Query: 146 IWLAKNLADIIDIIETEEKKW---------EDLHALKNEKYGMWWLLAADFLKIA----S 192
           I L K+   +++       +          E +  +  ++   +      FL       +
Sbjct: 161 IGLVKD--AMLEEPARSHAEAAAAVFVSRREQVERICVDEQRRYDEKFFRFLAKYGASVA 218

Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMK----GTKGPIIIAGSTGSIPATARLMST 248
           + + + L+E N        I       +        G      +  +     A   L+  
Sbjct: 219 RLYDQTLLENNTLDFSDLLIRAAALLRDRQTAQLWTGRFRFAHVDEAQDVSLAEYSLL-- 276

Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            +   +GA+ L   D +     W      +                  A+        R 
Sbjct: 277 -SRLCSGAVTLFCGDFNQTIYGWRGSDPAALA----------------ARFEADFHPVRV 319

Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
           +       S+++      I K+                ++        +D+ +   D   
Sbjct: 320 EFTINYRSSSQLLAVGQNILKAA---------FGRGGGSRFSVSSPRCTDIVVRAFDTPE 370

Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST----- 423
            EA  I  ++      +  ++A+I         +   L +            L+      
Sbjct: 371 AEAAWILESIESLGITDYTRAAVIARSNWACSELCELLCQGAHAARSPVRFMLADELRLF 430

Query: 424 -TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
                    + +  +    D  A+  L++   A  G        A    +  AL  +   
Sbjct: 431 SRAEVKDALACIALLANPRDGAAMLRLLRRHTAGVGEATARALAALPRTDSGALPCDLAD 490

Query: 483 YDIMDLKSLVLDRIATQKNNT 503
                        +    +  
Sbjct: 491 LRTHRDGDFFAGLLEAFFDGR 511


>gi|301511944|ref|ZP_07237181.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AB058]
          Length = 469

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/426 (12%), Positives = 113/426 (26%), Gaps = 52/426 (12%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    Y     L    + I   T+RA  E+ +   +  G ++  L    +       
Sbjct: 37  KTIVARAAYLIDQGLPANQIQILTFTRRAASEIVARVEQHVGAQAKGL-RASTFHTFCMY 95

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +          + +    L + RL+     K  D +     E       +      
Sbjct: 96  LLRRNPQAFGLTQFSIIDRDDQLLMFRLLRG---KDKDNVLPKAAELCDLYSYARNTQSK 152

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
           L++ L   +      +     +  L       +     +            L   +  S 
Sbjct: 153 LSEALLKQLPEAYEYK---SQIAEL----MKTYEQRKRE---------RNFLDYDDILSI 196

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
           V   +    A    +  G    +++     + P    L+  +        +    D    
Sbjct: 197 VAVHLQNSEALTNWV-AGFCQALLVDEMQDTNPLQWALLQPLIGKVK---LFCVGDDAQS 252

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +     ++ +                  ++  LD+     + + ++SN +   S + 
Sbjct: 253 IYGFRGADFENIHSFKERIPD---------AVIHTLDLNYRSTQEILDLSNWLLSHSPID 303

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
            +  L       +                    L    NE EEA  IA  L     +   
Sbjct: 304 YQKQLQAHRGKGQKPQ-----------------LHLFGNEFEEANWIAQDLIERHQQGAN 346

Query: 388 KS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                ++      AR ++       I      G+ L  + H   + SLL  +    D +A
Sbjct: 347 WYDHMVLVRSGYSARYLEGAFIAAEIPYRFIGGVKLLESAHVKDVLSLLRIVSNPQDDLA 406

Query: 446 IATLVK 451
               + 
Sbjct: 407 WMRFLT 412


>gi|239906472|ref|YP_002953213.1| hypothetical protein DMR_18360 [Desulfovibrio magneticus RS-1]
 gi|239796338|dbj|BAH75327.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 190

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDP 935
            ++ I +       IE + I + G  D ++    G + I D+KT       +   K    
Sbjct: 44  GLKVIGLEKAFSFQIEGVPIPIVGVMDMVEEDAGGNIVIVDHKTSSRSYSSDDIDK--SL 101

Query: 936 QLSLEAAALKAGSFSQ 951
           QL++   A KA  ++ 
Sbjct: 102 QLTIYGMAAKANGYAD 117


>gi|297568686|ref|YP_003690030.1| exodeoxyribonuclease V, gamma subunit [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924601|gb|ADH85411.1| exodeoxyribonuclease V, gamma subunit [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1187

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 98/945 (10%), Positives = 216/945 (22%), Gaps = 146/945 (15%)

Query: 36  YDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL 95
                P  L+S  + V ++     L     +  G  +   P        +E    A    
Sbjct: 26  LQDDPPPPLSSECVVVQSRGMATWLGQSLAQRFGIWA--HPDFPHPRRFIERLLRAAAGE 83

Query: 96  SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155
                   S      EL  L ++          +  P            ++ LA+ +A +
Sbjct: 84  EAATATSFS-----RELLTLAILELLPQLLSRPEFAPLRRYLEGADDWKSLQLAERIAYV 138

Query: 156 IDIIETEEKK--WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            D       +            +    W             W +      + + + +Q  
Sbjct: 139 FDQYLVYRPEMVLAWEDRQAEPEDDDRWQALL---------WRQLAQRFGSPARLFHQAK 189

Query: 214 LMRAEAEHLMKGT-KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI-- 270
               + +          + + G T   P    L++  A      ++L          I  
Sbjct: 190 GRLQQGDLAQPELLPARVFLFGITTLPPVYLDLLNEAAKLLPCHLLLFAPARDYWGDILS 249

Query: 271 ---------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK---------- 311
                     +     + +          H       L  + ++ RE             
Sbjct: 250 PKAANRLLLRHHPPAANADEQHGRDFEHLHLDTGHPLLASWGEVGREFQHIMEERAEYLQ 309

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD------------- 358
                         V   S L     D+           + +    D             
Sbjct: 310 PAHGDCFVNPATVEVAGASILARLQRDILELQEPAPAAADQRNSAGDSPNPNNRLPEQAA 369

Query: 359 --------VALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLEL- 406
                   + +    +   E   +   L   LD      +   ++  D      +   + 
Sbjct: 370 GAVDHDHSIVIHACHSPLREVEVLQDQLLAMLDVEGYRPRDIVVMVPDIETYAPLIEAVF 429

Query: 407 -----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                 R  I   ++             L +LL+          +   +     + GF  
Sbjct: 430 RRPTGDRRYIPFRLADRRVSREAPLLDALLNLLDLARGRLPLSQVLDFLAREPVRQGFGL 489

Query: 462 -----------KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
                          R +  ++    R +    D  +     LDR+           +  
Sbjct: 490 DGRQLQRLEQWLEQLRVRWGIDEEHRRRHDQPPDRQNTWRFGLDRLILGYALPGEDRYLV 549

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                  ++           +       +  +      +++ W +L    +      E R
Sbjct: 550 AGILPFDDIEGQDAQLAGVLLQFSQALFSLVDEVREAKTMARWVELVRRAMAAFFAPEER 609

Query: 571 KLPNLWFEE--EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                 ++       L +L  +    G         ++ ++   +D   +         L
Sbjct: 610 AAAGEQWQRQSLRDALVALLQESERAGLERPLELAAFLRLLRARLDEAGMA-AGFLEGGL 668

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
                L  R + F  + L G+N+G +     ++      + +               + F
Sbjct: 669 TFCTMLPMRTIPFPVVCLLGMNDGDF---PRQDNPAGFDLLAAAPRPGDRSRRRDDRYLF 725

Query: 689 E--MANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRG--------- 735
              + +  R L  +   R   +N     S  +  LL           +            
Sbjct: 726 LESLLSARRRLYISYVGRSIKDNTELPPSPLVDELLDCLERMPEAVAESTADSEGTGEEE 785

Query: 736 -------------------QCYLDWTRKLDYTTKQPHYKRPKPFP--------------- 761
                              Q +     + D      +     P P               
Sbjct: 786 RLADRRRRTRARFVVNHPLQPFSPRYFQPDQPLLFTYAAEYAPVPSTRPVGTGQGGPDSP 845

Query: 762 -----PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                     P   + +E+ +   +P   YA   L L   P  +  PDR          +
Sbjct: 846 RPKAAATAPAPGAPTLAELHRFFRNPSRWYAEHHLGLSLPPGEEARPDREPV------FL 899

Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
             L   R+N+   +    +   +++  + E     +  +      
Sbjct: 900 ERLDAYRLNRQLLQDPASVLAAVNAGEDDEAGR-RLRHLLAARGE 943


>gi|256825225|ref|YP_003149185.1| RecB family exonuclease [Kytococcus sedentarius DSM 20547]
 gi|256688618|gb|ACV06420.1| RecB family exonuclease [Kytococcus sedentarius DSM 20547]
          Length = 313

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 78/253 (30%), Gaps = 48/253 (18%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-KRINKN 827
             S S     +  P     R + +L              RGT  H+++  +       + 
Sbjct: 5   ALSPSRAGDFMQCPLLYRFRVVDRLPEP-----PSAAAVRGTFVHSVLENVFDLPAHRRR 59

Query: 828 TPEINHLMKQIIDSHFEKEN---------------------------------LPPHIDI 854
             +   LM+Q       +                                     P    
Sbjct: 60  PDDAVGLMEQTWADLVAERPEVLEVLRADGSGATALDAVDGDADRASTGAAVQPTPEELA 119

Query: 855 IWRHLFHKISHSFLEHEEK--IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK-SG 911
            W      +   +   E+   ++ +  +++V +P     E   + L G+ DR+D+    G
Sbjct: 120 AWMADAEALVRRWFTLEDPSVLEPAERELYVEVPVDRGGERGELVLRGYVDRLDVAPADG 179

Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
            + + DYKTG  P +    K +  Q+   A A+       +  R  A L  + LK    +
Sbjct: 180 ALRVVDYKTGRAPSELFQAKAL-FQMKFYALAIWR-----LRGRVPALLQLVYLKDGTVL 233

Query: 972 DCITNDKKKYSAD 984
             +   ++  + +
Sbjct: 234 RHVPTQEELLATE 246


>gi|262370059|ref|ZP_06063386.1| exonuclease subunit V [Acinetobacter johnsonii SH046]
 gi|262315098|gb|EEY96138.1| exonuclease subunit V [Acinetobacter johnsonii SH046]
          Length = 1250

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 102/925 (11%), Positives = 231/925 (24%), Gaps = 104/925 (11%)

Query: 150  KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
            + +   ++ +   E   + L A                     K   + L + + ++   
Sbjct: 339  RQVRSFLEALAELELNLDVLDAYLKYHLS----------SEVKKRLPQVLQQKSETTFAQ 388

Query: 210  YQIALMRAEAEHLMK-------GTKGPIIIAGSTGSIPATARLMSTVAN----HPNGAIV 258
                L  A      +            I++     +      +++ +      +  G ++
Sbjct: 389  QIRTLSEALQGEQGRRFAQFVQARYPLILVDEFQDTNQDQDDMLARIWRDVQRYHQGCMI 448

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
            +   D       +      + N    +       QY        L      V++L  V +
Sbjct: 449  M-VGDPKQAIYGFRGGDMLTYNKARLDVLAKHGRQY-------SLKYNHRSVQKLVQVVD 500

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
             ++ R     +                               L+E  +++ EA  +A  +
Sbjct: 501  ALFQRQQDFGEQVYYQPVEAGTRPHPALVDAQGENHVPLRWLLLE--DKKNEAQQVAWKI 558

Query: 379  RMSLDENKK----------------KSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            R  +++  +                  A+++ + +   +V+ EL R GI ++  +   + 
Sbjct: 559  RDLINQGIQQQLYVADDPLQFIGANDIAVLSKNHDGLDKVQFELERLGILVNRPSKRSVF 618

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP---EKYLSRAKNALELVALRGN 479
             +  +  + +LL A+    D   +   +   L         E        +  +      
Sbjct: 619  ESQVAKDVGALLTAMMHPFDEAKVRRALLSRLLAIDLKQLLELEKQANGLSQFMADFDDI 678

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
            ++ +      S     +   K   ++  +QSR +E        L + + Q        + 
Sbjct: 679  RDMWINKGFLSAWQYALNLFKVWKNLVAYQSRDNERTVVNLRHLTELLSQHSEQFQGAQK 738

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
              +     L +    +  +    +          +     E K +  L +          
Sbjct: 739  LYHWYLKQLHLPAEREWELERKLSNATGVQLMTIHQSKGLEFKIVFLLGADKDFKEMNKT 798

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             N      I       E  +      + L     ++      +          +   +  
Sbjct: 799  LNFSTLEQINPTTGQSELQRIVAVNDANLLDPAAIDQHNERAEAEQHRLWYVALTRASHR 858

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
                L           T   + GQA + FE       ++ T   +   +     + + +L
Sbjct: 859  VYALLQDQEYKSNTALTF--WRGQAGNLFEHPASGNEVLLT--EKPIRLQPAEHQEIIQL 914

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
              L   +      +    +    + L                        +   E  +LI
Sbjct: 915  QALAFPE-QRFYPRSKTSFSALAQHLSRREAMDALAVLSEKVGSADDEINHPVLEDVELI 973

Query: 780  NDPYAVYARRILK-------LDFIPHFKKDPDRTDRGTLFHN--------IITELIKKRI 824
              P A   R+          L  I       D  D G   H         +  EL+ K  
Sbjct: 974  Q-PLAWIKRQFPMGTTAGTFLHEIFEHIDFQDSGDWGLEIHRRFKNDSPLLWQELLGKYQ 1032

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK--ISHSF-----LEHEEKIQSS 877
            N+   +    +   + +        P                  F     L         
Sbjct: 1033 NEFGQDDETQLVLWMQAWLADVLETPLHAGFQLKQLKADEHLAEFPFYLSLSDHVLAIKR 1092

Query: 878  IEKIFVNIPAKMAIESIGIH----LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933
            I+ +F      + ++    +    LTG  D +         I DYK+      + +    
Sbjct: 1093 IQTLFQEYGIDL-LDLNEANSARYLTGSIDLVYFDG-QRYHIADYKSNFLGADQQSYNHD 1150

Query: 934  D-----------PQLSLEAAALKAGSFSQIDCRKV----ANLFYIRLKQKFKIDCITNDK 978
                         Q  L   AL       +    +        Y+ L+            
Sbjct: 1151 AIELNMSHASYWLQAGLYLVALHRYLKVNLLDYDIEEHLGQASYLYLRGMNGQPDQGVLS 1210

Query: 979  KKYSADELSEKSLKNLIEIVTLLQN 1003
             + S + +       L  I+     
Sbjct: 1211 WRASPEFIL-----RLDAILGYFAE 1230


>gi|66968462|gb|AAY59610.1| ATP-dependent deoxyribonuclease chain-like [Listeria seeligeri]
          Length = 430

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 107/359 (29%), Gaps = 29/359 (8%)

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
             L  +  L +     +       LA++   ++ EE    DL     +            
Sbjct: 97  AALDQKEKLKVFSRATSRKGFYSELANLFKEMKQEEVSITDLEE-SAKMLPTSVNNKVHD 155

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           + +  + + E L            + L+  +        +  III G          ++ 
Sbjct: 156 ISLIYQKYEELLA--GKFLENEDYLKLLADKIAESDYLNQTEIIIDGFNSFSKQELTVIE 213

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +    +   +   L+      I   + E S    S+         YSL +     +I  
Sbjct: 214 KLMQKCDKLTISLTLNV---PEIERGLEEFSMFRASTEAY------YSLLETAKLNNIPV 264

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
           E++K L             ++  +                   + Q   +++ + +A+N+
Sbjct: 265 EEIKLLLGNKRAKTPPLEFLANVWGQNKF-------------ASFQGETTNLNIHQANNK 311

Query: 368 REEAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTR-FGINIDISAGIPLSTT 424
           R E   IA  +R         K  A++T +      +   L   + I I I     ++  
Sbjct: 312 RAEIEGIAREIRGLTSNGYQYKDIAILTRNLGDYDVLCETLMEDYNIPIFIDKKRAMAKH 371

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE-KYLSRAKNALELVALRGNKNS 482
                + S L+AI     +  I   VK         +   + R  + LE   L     +
Sbjct: 372 PFIEFIRSSLDAIQFNWKYEPIFQAVKTEFFFDSAADVADMRRKSDILENYVLENGIQN 430


>gi|296390983|ref|ZP_06880458.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas aeruginosa PAb1]
          Length = 633

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 72/610 (11%), Positives = 157/610 (25%), Gaps = 63/610 (10%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L    V   R  PL PL    V ++  +    Q L+    E   +       I +  +V 
Sbjct: 25  LRDLAVSWMRRYPLAPLESERVLVH--SNGIAQWLKLALAEDPREDGGGGGGIAAALEVQ 82

Query: 86  ----EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                       +L     P VS + +     RL+ +    L            L+    
Sbjct: 83  LPAQFLWQAYRAVLGRESIPEVSELDKAPLTWRLMRLLPGLLERPEFRTLQRF-LADDAD 141

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLAADFLKIASKYWTER 198
                 LA+ LAD+ D  +     W D  +   ++               +  ++ W   
Sbjct: 142 LRKRHQLAERLADLFDQYQVYRGDWLDDWSQGRDQLRTANGQARPLGADERWQAELWRAL 201

Query: 199 LVELNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANH 252
           L ++ A S    +  + R   E L       +     +++ G +     T   ++ +A  
Sbjct: 202 LADVGADSLARSRSGVHRRFIEALRFASAAPRALPRRVVVFGISSMPAQTLEALAALARF 261

Query: 253 PNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
               + +     H    I             ++      ++       Q++   L  +  
Sbjct: 262 SQVLLCVHNPCRHHWADIVADKDLLRHEYRRQQRRAGVPADLDEDRQHQHAQPLLAAWGK 321

Query: 305 IKREDVKRLGNVSNEMYGRS------------------MVISKSFLPPDTSDMRNTDILE 346
             R+ +  L +  +    R+                    +               +  E
Sbjct: 322 QGRDYINLLDSYDDPDSYRNLFGEVNGGRIDLFSEEAPHGLLGQLQDDILELRPLAETRE 381

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRV 402
           +  P   +  + +    A + + E   +   L    + +     +   ++  D N     
Sbjct: 382 HWPPVAPRSDASIRFHVAHSAQREVEILHDQLLARFNADPSLKPRDVIVMVPDINAYAPH 441

Query: 403 KLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +        +  I   ++             L  LL           I  L+  P  
Sbjct: 442 IEAVFGQVPRDDQRFIPYTLADQGQRGREPLLIALEHLLKLPDSRFAVSEILDLLDVPAL 501

Query: 456 KFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVP 506
           +  F   E  L+     +E   +R   ++     L        +     +        V 
Sbjct: 502 RRRFGVDEADLATLHRWIEGAGVRWGLDAAQRERLGLPAGLEGNSWRFGLRRMLLGYAVG 561

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK-NSTCGNLSISDWTKLTVTCLQNVC 565
              +    +  +    L   +   +  L+              + + W +     L    
Sbjct: 562 EGAALQGIQPYDEVGGLDAALAGPLAVLLERLEVAYAELAEPATPAQWGERLQALLTVFF 621

Query: 566 LDEHRKLPNL 575
                +   L
Sbjct: 622 EAHDERDELL 631


>gi|169831437|ref|YP_001717419.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis
            audaxviator MP104C]
 gi|251764572|sp|B1I493|ADDA_DESAP RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|169638281|gb|ACA59787.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis
            audaxviator MP104C]
          Length = 1230

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 86/827 (10%), Positives = 177/827 (21%), Gaps = 131/827 (15%)

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAI-VLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            +++            ++  V+     A  +    D       +                 
Sbjct: 402  VLVDEYQDINAVQETILRLVSRQDAAAPNLFMVGDVKQSIYRFRLAEPALFLEKYRAFDT 461

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                  +    L      RE +      +     R ++          +           
Sbjct: 462  GEDAGGARRIDLSHNFRSRESIIH----AVNAVFRRIMTPAVGELAYDTAAELVCGGTPA 517

Query: 349  IPNIQKCFSDVALIEADNE------------------------REEAISIAIALRMSLDE 384
                     +V L+ A                           + EA  +A  +R     
Sbjct: 518  QLEGSGPPVEVHLLGAPTSVGRDTAGTADDEPDRSDEADLTAVQREARLVAGIIRRLAGL 577

Query: 385  NK-------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                         L+ A    A     E  R  I      G      +    + SLL  I
Sbjct: 578  GGECTVPYRDIVVLMRATTGKAGTYLEEFRRQNIPAYAKVGTGYFEAVEVETVLSLLKVI 637

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
               +  + +A +++ PL   G  E    R  +            +     L +++   + 
Sbjct: 638  DNPHQDIPLAGVLRSPLVGLGAAELAAVRLADKEGDFFRAVVAAAGQGGRLGAVLAGFLE 697

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              +            S+        L+  + +                   ++       
Sbjct: 698  RLEK---------WRSQARCGSLADLIWDVYRTTGYYDYVGGLPGGAGRQANLRALYDRA 748

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG---SCIKANAIEWIDIITRLID 614
                        R L  +   +EG         + E+      +  +  + ++    ++ 
Sbjct: 749  RQYEATAFRGLFRFLRFIELLQEGGQDLGPAPALAESENVVRIMSIHQAKGLEFPVVILA 808

Query: 615  GETVKPKIEK-------------SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                +  +                      G   S       ++   L      +     
Sbjct: 809  DMGRRFYMPDLNGEVLLHKDLGLGPYFVDPGARVSHPTAAWHVVRERLRREQLAEEMRIL 868

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-------------------------- 695
                   +  L L  +   + QA   +  A                              
Sbjct: 869  YVAMTRARERLILTGSAGRLEQAVLRWSHAAAGDGETLPVPVLAEAESFLDWVMPVLMAH 928

Query: 696  ------HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY-- 747
                    +  RS      P   SRW   L      +            L+  R+L    
Sbjct: 929  PDGEPLRRLAVRSRPAAGTPKDRSRWEVHLHRPEDLEEAAGADPDTAAVLESLRRLAPIP 988

Query: 748  ----TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN----------DPYAVYARRILKL 793
                  +  H      +P           S  +               P     R     
Sbjct: 989  ADGGLDEAVHRALSWHYPWSALASCGAKISATEVKRRFAAAAAGEEEVPAVFPYRAPPAR 1048

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                   +       G   H ++  L     + +   I   +  + +  F        ID
Sbjct: 1049 PAFLETARGLSPQAFGRAMHVVLQHLDLAG-DLSVDGIRAQVAGLEEREFLTATEARAID 1107

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------IHLTGF 901
                    K++  F     +  +    +    P  + + +              + + G 
Sbjct: 1108 A------EKLAGLFAGGLGRRLAGALWVRREWPFCLVVPAHEIYPGLEGHPEERVMVQGI 1161

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKL--IDPQLSLEAAALKA 946
             D +     G + + DYKT        A        QL L A A++A
Sbjct: 1162 IDCLFAEPDG-LVLVDYKTDRVGPGGEAALADRYRGQLDLYARAVEA 1207


>gi|302335487|ref|YP_003800694.1| UvrD/REP helicase [Olsenella uli DSM 7084]
 gi|301319327|gb|ADK67814.1| UvrD/REP helicase [Olsenella uli DSM 7084]
          Length = 1176

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 79/799 (9%), Positives = 195/799 (24%), Gaps = 70/799 (8%)

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
            E   L       +++     +     R++  ++   +   +    D       +     +
Sbjct: 349  EIAALYGEKFRLVMVDEFQDTNAQQVRMIELLSG-RDACHLCTVGDAQQSIYRFRAADVQ 407

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                                  LD      +DV RL             +         +
Sbjct: 408  VFRDRERFLAEGG---TGAVVCLDQNFRSHDDVLRLVACLLGKGLVPGFMDLRPWAGRPT 464

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEAD-NEREEAISIAIALRM--SLDENKKKSALITA 394
                  +    +  +    S    + A    R+ A  +A  +    +  +     AL+  
Sbjct: 465  SYGAAGLPRVSVEAVVGLSSGRRGVPATLRSRQLARQMAERIGDYVAAGQRADDVALLLG 524

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA-IATLVKHP 453
              +        L   GI+  +S G   S      ++ SLL+ +    D  A +  ++   
Sbjct: 525  RMSNLGVYLEALRERGIDCVVSGGSTFSDAPEVHVVASLLHVLANPRDTQAGLYPVLVSR 584

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            +      +  L   +      AL        + D +       + +         ++   
Sbjct: 585  MFSLTADDLCLLSTRQQERADALAKRGIDVGLWDFEFPRGCVPSARLVRAREVLGRAIGR 644

Query: 514  EEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                 +A +L+  I +   I  L     +  +   N+  +      +     + +     
Sbjct: 645  LGSWGVADVLLSAIRESGWIVRLERAGADGQAQLANVLAAVRHVGELADEAGLGVSSAAL 704

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
              + W E      +SL      +   +  +A + ++     I       +   +  +   
Sbjct: 705  EFDRWLEAAKVGPASLVGGGAGSVKVMTVHASKGLEYPVVAISECWGNDRAASARGITAE 764

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-KYIGQAAHDFEM 690
                +         +  L+              +      L+  +A+ +   +A   +  
Sbjct: 765  NRGGTVRAALVPEGVTPLDLRTDVPLDPSECTTTIDWAKFLHAVSADGEQAERARLLYVA 824

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR---------------- 734
                +  +        +     S  L R +             R                
Sbjct: 825  ITRAKEAVILGMGVTLSSKGSVSPTLARGVAEALFGEALPAPGRHEVPYGGSAPASVRVV 884

Query: 735  -------------------GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
                                +  L     +D    +           L    +       
Sbjct: 885  SMRPSEQGEPVVDDGGAGAAEPPLAALEDVDRDAGELAIVDEATSDGLPEARQHAGTWSA 944

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDP-----DRTDRGTLFHNIITELIKKRINKNTPE 830
            ++ +    +  A+ ++        + D      D +  GT              +    +
Sbjct: 945  REGVFSYSSARAQMLVGEGEGQPAEGDVRPLPEDASLVGTRGDAGAEADDGPMADTADAD 1004

Query: 831  INHLMKQIIDSHFEKENLPPHI---------DIIWR------HLFHKISHSFLEHEEKIQ 875
                +        +                    WR               + + + + +
Sbjct: 1005 KATNLGSAFHELAQCLVEGQGALAPGRIERTKAYWRLSTRQGARLDAALARWQDSKLRRE 1064

Query: 876  -SSIEKIFVNIPAKMAIESI-GIHLTGFADRIDLL-KSGFVDITDYKTGDNP-KKETAQK 931
              S + +   +P   A+++  G H+ G  D +     S    + DYKTGD     +   +
Sbjct: 1065 VLSHDLVRAELPFFRAVDAPYGSHVEGAIDLVATDVGSTSALVVDYKTGDAGLSLDEVAE 1124

Query: 932  LIDPQLSLEAAALKAGSFS 950
                Q +  A+ L    + 
Sbjct: 1125 RHRMQANFYASVLMGEGYE 1143


>gi|257052990|ref|YP_003130823.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
 gi|256691753|gb|ACV12090.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
          Length = 959

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 67/777 (8%), Positives = 171/777 (22%), Gaps = 120/777 (15%)

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL---MRAEAEHLMKGTKGP 229
             E +        +F+      + +  V  N  +    Q+     +  +           
Sbjct: 248 AEEAFVEDREALTEFIHDVYVEYIQFAVRRNYLNFSFLQLFAFVQLCEDHALRESIAFEQ 307

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
           +++     +     +L   +A   N  +V    D       +     ++           
Sbjct: 308 VMVDEFQDTSEIQFKLTLLLAGTDNLCVV---GDWKQSIYGFQYAAVENIRSFE------ 358

Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                 L      L+ + E V         +  R    S   +   +             
Sbjct: 359 ----RRLRAYKRELNGEHERVAFPIEEVTTIPLRRNYRSTQSILDLSRHALTVPATG--S 412

Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
            ++ +   D+  +EA  +R+ +   A       +    +   I  + + A     +L   
Sbjct: 413 ESVDRTVEDIDGLEAATDRDHSTIAAFTSASEHEAILDRIETIVGNDDYAVDENGDLRT- 471

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
                      L+ T                ++F                    L     
Sbjct: 472 ---PRYDDIAVLTRTR-----RFGRELQTTADEFGVPVAYEGGVKLFETDQAILLLAWLR 523

Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
            L     R            ++VL+R             +    +        L      
Sbjct: 524 ILADEDSRRGW---------AVVLERAGYTLAEVEQILDEHTYPDAMDAFRDRLAAMESI 574

Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                  ++          S+    +              R +      E    +     
Sbjct: 575 GAIARQVFERYGFEDAYASSLVALLQDVSDGTTRNLGGMIRFIERSLDAEATHEIDDNP- 633

Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
              ++ +    +A + ++    ++                 +   +   L         L
Sbjct: 634 -GGDSITVQTIHAAKGLEHPIVIVANINRYSFPPAGGGDDRIRFEDPIGLR-----QTKL 687

Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
           +     +    + +  RV+ + L       Y  +    +      +  +   +       
Sbjct: 688 SSTAHGQPHLYDNWRYRVLSACLG----RDYDEERRLLYVAMTRAQDHLLFSA------G 737

Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
              S   + L +   +   D  + R         ++          +             
Sbjct: 738 AEPSPLFENLPLEPESVEPDLEESRIDRTEQTRLQVSIPEPDVPAGQSP----------- 786

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
                                L  D +   + D    + G   H    +       +   
Sbjct: 787 -------------------HALMDDRVFEDRDDGRGIEFGNRVHEFAEQYADGEAVEPAS 827

Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
           +    ++  ID    + ++                                        +
Sbjct: 828 DDERRVRDFIDELEGELHVEEDAY---------------------------------LPV 854

Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
           ++    + ++G  D + +     V+I DYKT        A+     QLS+    ++ 
Sbjct: 855 SVGEQEVTISGVIDLLHVTGD-RVEIVDYKTDRT---RDAETEYRKQLSVYYHVVRQ 907


>gi|283798327|ref|ZP_06347480.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1]
 gi|291073910|gb|EFE11274.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1]
          Length = 618

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 70/706 (9%), Positives = 172/706 (24%), Gaps = 137/706 (19%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-PIIKSL 81
             ++   +        +NP   +S+ +   T+ A +E++  F  +   +         + 
Sbjct: 29  TTVVTHRVQSLIERHGVNP---SSILVITFTRAAAREMKERFERLMEGRCLRGQVSFGTF 85

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             V            Y     +   QRL  +  L+                       + 
Sbjct: 86  HAVFFRILKLAY--GYEAADIIREDQRLRFMRELVAK-------------------EQLE 124

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
           P +   L  +L   I  ++ E    +  +A    +            K     + ERL  
Sbjct: 125 PEDENELIASLLSEISSVKGELIDLDHYYAKSCSEEA---------FKRIYAGYEERLRR 175

Query: 202 LNASSPVGYQIALMRAEAEHLMKG-----TKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
                     +       +              I++            ++  +A   N  
Sbjct: 176 NRKIDFDDMLVMCYELFRQRPDILGAWQKKYAYILVDEFQDINRLQYEIVRMLAAPRNNL 235

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            ++   D       +     +       +   +             LD+     K + + 
Sbjct: 236 FIV--GDDDQSIYRFRGARPEIMLGFERDYPDAGRVL---------LDVNYRSTKEIVDA 284

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           S  + G +                     +  +         V      +E EE   IA 
Sbjct: 285 SLRLIGNNEK-----------------RFKKSLRTAGSRGRKVITRVWKDEEEENSRIAE 327

Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSL 433
            +RM  +     +  A++    +  RR+  +L  + +       +P L     S  + + 
Sbjct: 328 EIRMYSEAGCAYRDIAVLYRTNSGPRRLIEKLMEYNLPFKARDVVPNLYEHWISKNILAY 387

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           +       +   +  ++  P            +          R      + ++     L
Sbjct: 388 IRVALGSRERGEVLQMINRPARYISRDALQAPQISFDEVKGYYRDKDWMVERIESLEFDL 447

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
             I                                  ++PL      + S   +  + ++
Sbjct: 448 TAI--------------------------------SRMSPLAAVNYIRKSVGYDAWLYEY 475

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                           +   +    +      S  S+  E                    
Sbjct: 476 AAAHRMKADEFLETADQLKESAARYKTFDAWFSHISEYGEELK----------------- 518

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                + + + +  + +     S+ L +  + +   NEGV P + A              
Sbjct: 519 --RQAREREQTADAVTLSTMHSSKGLEYRVVYILDANEGVTPHSKA-------------- 562

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN-NIPTIASRWLQR 718
                    +    +      +  ++  S++E  + P   SR+++ 
Sbjct: 563 -VLDADIEEERRLFYVAMTRAKQRLHVYSVKERYHKPAEVSRFVEE 607


>gi|240142706|ref|YP_002967219.1| hypothetical protein MexAM1_META2p1101 [Methylobacterium extorquens
           AM1]
 gi|240012653|gb|ACS43878.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 878

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 78/676 (11%), Positives = 163/676 (24%), Gaps = 80/676 (11%)

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            +       V   +  R  V   ++                ++ + +     V +  A  
Sbjct: 149 PDLAPCWHPVVVALAQRVAV---TWASGPRPVPEWIAATAVRVVSSEPEAPVVEVCSAAT 205

Query: 367 EREEAISIAIALR----MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            R E +      R        +  + +            V        +++    G+P +
Sbjct: 206 PRHEVLEALRWARGLMASGRAKPSEIAIAACRTEEYDDVVLALRAEAHLDVRFVHGVPSA 265

Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
           +        +L + + +      I                   R    L           
Sbjct: 266 SVREGQAAAALADVLVRGLSQDGI------------------RRLAALLRQGPGPFGALP 307

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                +                +         +   +A  L   +               
Sbjct: 308 PGWTGMLPREAPLTNLAAWERLLAGRDVLTRPDGPAVAKDLRAILALLARGTSAAAEAGE 367

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
           +    LS+  W K  +     V              + G ++           S +    
Sbjct: 368 TLLHGLSLRIWRKALLEGSPAVVDLTLSHQRIDDDADAGTSVVW------APASALACAP 421

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             ++ ++     G    P++     L     + SR+L+     +    +     +T+   
Sbjct: 422 RRFVRLLGLSSRG---WPQVVSEDRLLSDHLVPSRILDPLPRSVSDRGDFAAILSTSSEA 478

Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
            +    +   + +   K      H      G   +         +      R + R    
Sbjct: 479 VVLSRPRRGADGRLLGKSPLLRGHPDGTHLGRNRV-------PEHAVGEIDRLMARPEEF 531

Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
             T           C+  W       T      RP     +    R +S   +++L+ DP
Sbjct: 532 RATAQATAAAS---CWRAWAGA--ELTAHDGRIRPNHPVVVSVLGRVHSARSLRKLLRDP 586

Query: 783 YAVYARRILKLDFIPHFKKDP--DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
                R  L L+     ++    D    G+L H  +   +               ++   
Sbjct: 587 LGFVWRYGLGLETADPSEETLTLDHRAFGSLMHEALEATVGALEAGGGFAAAPADRRRAA 646

Query: 841 SHF-----------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK- 888
                         E+   P  +          IS + L H +   +     +V +P   
Sbjct: 647 LAAAVASVAAAWERERPVPPALVWRRTLEEVTGISLAALSHPDAAYAGQT-TWVEVPFGG 705

Query: 889 -----------------MAIESIGIHLTGFADRIDLLK-SGFVDITDYKTGDNPKKETAQ 930
                            + I    I ++GF DR+DL +      + DYKT    K     
Sbjct: 706 QAPKRDGTAVPWDHGLPVEIPGTDIRISGFIDRLDLSECRSEARVRDYKTEKPRKPTDVL 765

Query: 931 K-LIDPQLSLEAAALK 945
               + Q  L   A +
Sbjct: 766 AGGRELQRCLYGYAAR 781


>gi|119356509|ref|YP_911153.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM
           266]
 gi|119353858|gb|ABL64729.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM
           266]
          Length = 734

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 82/685 (11%), Positives = 174/685 (25%), Gaps = 122/685 (17%)

Query: 46  SVTIYVPTKRAIQELR---SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
           ++     T +A  E+R      ++           I +   +       D+ L       
Sbjct: 54  NILALTFTNKAAGEMRHRVDVLLQQGSAGGLW---IGTFHSIFARLLRNDIHLL------ 104

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                R   +            D  K L  +S   L ISP +       L  II   +  
Sbjct: 105 --GYDRNFSIFD---------ADDSKSLIRQSMGELNISPDSVPLNT--LQGIISRAKNS 151

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH- 221
               E+      +                   +T +L E NA       I  +    EH 
Sbjct: 152 FILPEEFRRSAGDYN-------QQIAAKVYDLYTRKLRENNALDFDDLLIKPLELFREHP 204

Query: 222 ----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                ++ T   ++I     +  A       ++       +    D       W      
Sbjct: 205 MVLEALQDTFRYLLIDEYQDTNKAQYLAAKMLSAKHRN--IFVVGDDAQSIYSWRGADIS 262

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +      + T                            ++ ++              ++ 
Sbjct: 263 NILNFQDDYTD--------------------------ALTFKLVENYRSTGTILQAANSV 296

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394
              N   ++ ++ + +     + LIEA NER EA  I   +     E     +  A+   
Sbjct: 297 IRNNLRQIKKELVSHRSAGDPLTLIEARNERHEAEKIGEYIHSIRIEKGYEFRSFAVFYR 356

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +R ++  + +  I   I   +            + L  +    D  ++  ++  P 
Sbjct: 357 TNAQSRVLEDLMRQNRIPYKIFGSVSFYKRKEIKDAVAYLRFLLNDRDSESLLRIINFPP 416

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
            K G       R     E + L       D    +S +++ +    +             
Sbjct: 417 RKIGETSIGKLREFAEAEGITLYEAITRADEGQFQSRLVNSLKGFSS------------- 463

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                       +++ +  L    T         S++    L         L  H  L  
Sbjct: 464 ------------LIEALRLLAETGTVYAVLTELFSLTSIPLLLKEENTAESLARHENLQE 511

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           L               +    S    +     D +  +          +  + + ++   
Sbjct: 512 L-------------LSMARDFSDNNPDQGSLGDFLETISLASNYDESQDSDNYVSLMTVH 558

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            S+ L F  + + GL E ++P                LN    E+   +    +      
Sbjct: 559 ASKGLEFPVVFITGLEERLFP----------------LNCYEPEQLEEERRLFYVAMTRA 602

Query: 695 RHLIYTRSLRENNIPTIASRWLQRL 719
           +  I+    +   +       L+ +
Sbjct: 603 QEKIFLSWAQTRYLYGQPQYCLKSM 627


>gi|329911425|ref|ZP_08275525.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium
            IMCC9480]
 gi|327545902|gb|EGF31006.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium
            IMCC9480]
          Length = 1090

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 81/786 (10%), Positives = 176/786 (22%), Gaps = 102/786 (12%)

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIP 240
                  +     E         +    R           +  +      I++     + P
Sbjct: 361  AAYLAVYQAVKAEQRVFDFADLEWQAYRLLGNEEHAAYLQSRLDSRYRHILLDEFQDTNP 420

Query: 241  AT----ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
                     ++   +      V    D       +     +      +            
Sbjct: 421  LQWSIVRAWLAAYGDDSAAPSVFIVGDPKQSIYRFRRAEPRVFLAARAMLAAQGAAILQT 480

Query: 297  AKLLDFLDIKREDVKRLGNVSN---EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
             +      +  E +      +         S      +  P      +T +    +    
Sbjct: 481  NQTRRNAPVLIELLNDSFGPNPIFSAQTTLSARPGMIWRLPLVVQSASTVVAPAGLVLRD 540

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDE---------NKKKSALITADRNLARRVKL 404
               + +   E     +E  ++A+A+R +  E               L+   R      + 
Sbjct: 541  PLVTPLEEDEDARRLDEGRAVAVAIRRARLELAACNGTLPRWSDVMLLVKKRAHLGAYET 600

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L   GI         L  +L  + L +LL  +    D  A+A ++K P+      +   
Sbjct: 601  ALREAGIPFASDKRGGLLESLEIADLIALLTFLITPGDNRALAHVLKSPIIGAADTDLIR 660

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                                                        Q  L          L+
Sbjct: 661  LA-----------------QHDGGSWWQRLLALEDVLPDATMQLQHWLMIAPGLPVHDLL 703

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
            D IL     +  Y  +  +      I +    T   L             +      +  
Sbjct: 704  DRILHEGQLVARYAASVPALLRGQVIGNLEAFTALALNLDAGRYPSLPKFIDALRALQNA 763

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
            +   +                                      + IL    ++ L  D +
Sbjct: 764  AHNDAPDEAD--------------------------IDAALDAVRILTIHSAKGLEADIV 797

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
            +L   N    P              +      +             A       +     
Sbjct: 798  VLLDAN-HSEPARDDAGILCEWPQDAAAPTHFSAFGRVAERGAARDALFADEDRFRVQED 856

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
             N +    +R  ++ L++ G     N +  G     W  +L    +              
Sbjct: 857  WNLLYVAMTRA-RQCLIVSGVAGKRNAQADGTVDGSWYARLLEAPEMLLEAESFGDADSI 915

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
                 +               +   ++    +P   +     D G   H ++  L + R 
Sbjct: 916  ESDFHWPV-------------FNPAVIPPAAVPEVAESTPEIDEGIALHGLLERLTQHRD 962

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                     ++ + +D         P    + R     I  +      +     + +F +
Sbjct: 963  GVLPVPDASVIARWLD-------CSPACAGVVRAQALTILAA--PDLSQFFDPHQIVFAH 1013

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE---A 941
               ++  +   +      DR+  L    + I DYK        + +     QL+     A
Sbjct: 1014 NEIELLHDGELLRF----DRLVQLPD-ALWILDYK---RRLLASERADYAAQLARYRRAA 1065

Query: 942  AALKAG 947
             A+ AG
Sbjct: 1066 LAVYAG 1071


>gi|262378262|ref|ZP_06071419.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|262299547|gb|EEY87459.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 194

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 17/192 (8%)

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITEL-I 820
              +      S +  L + P    A+ +L                R GT  H  +T+   
Sbjct: 6   NPDKIIPIRASSLSDLFDCPARWEAKNLLNKRTP------AGARTRLGTAVHEAVTQWDY 59

Query: 821 KKRINKN--TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
              I ++    E   ++   I    E+ +           + H +   ++ H    Q   
Sbjct: 60  LNLIEEDVTLEECREILHHQIWQPGEEVDWSDLDQNAAEAIGHSLVQKYITHIAPTQKF- 118

Query: 879 EKIFVNIPAK-MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA---QKLID 934
             I V +  + + +  +GI LTG  DRI     G + I D K+G N              
Sbjct: 119 --IGVEVRCESLILADLGIELTGTIDRIYENNEGELGIGDLKSGKNAVASDGTVKTVGHA 176

Query: 935 PQLSLEAAALKA 946
           PQ+ +       
Sbjct: 177 PQMGIYTVLASH 188


>gi|254823034|ref|ZP_05228035.1| exodeoxyribonuclease V, gamma subunit [Mycobacterium intracellulare
           ATCC 13950]
          Length = 1100

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 82/730 (11%), Positives = 192/730 (26%), Gaps = 54/730 (7%)

Query: 39  LNPLLLASVTIYVPTKRAIQELRSEFIEITG--------KKSTILPIIKSLGDVVEEKFT 90
                 A   + VP +   + L      + G                 +S G ++ E   
Sbjct: 25  PPADPFAPELVVVPARGVERWLSQRLSHVLGRARGGGVSGGVCAGVSFRSPGSLIAEIAG 84

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
                 ++    ++          L   W   L   +   +  +   L         +A+
Sbjct: 85  TADDDPWS-PEAMAWPLLEAIDHSLDEPWCRPLATHVGHFHTGAEAELRRG--RRYEVAR 141

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            LA +      +         L  +  G       + L+   + W   +  + A  P   
Sbjct: 142 RLAGLFASYARQR------PQLLIDWLGGDPGDLDEDLRWQPELWRALVSRVAADPPHIR 195

Query: 211 QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
               +   +E         + + G T      + L++ +A H    + LP     +  A+
Sbjct: 196 HAKTLARLSEAPSDLPA-RLSLFGHTRLSRTDSELLAALAIHHELHLWLPHPSDRLWRAL 254

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
             T         +S+     HP   LA L   L   +  +         + G +   +  
Sbjct: 255 AGTRGAIPRREDTSHRAV-GHPL--LATLGRDLRELQRGLPADAQTDEYLPGEARPDTLL 311

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----K 386
                             + +  +    V +        +   +   L   L ++     
Sbjct: 312 GWVQSDIAANAVRPQGRALTDDDR---SVQIHNCHGPARQVDVLREVLLGLLADDPTLEP 368

Query: 387 KKSALITADRNLARRVK----------LELTRFGINIDISAGIPLSTT-LHSSILTSLLN 435
           +   ++  D      +                        A   L  T    ++ + LL 
Sbjct: 369 RDILVMCPDIETYAPLIVADFGLGDVVHGAHPAHQLRVRLADRSLVQTNSLLAVASQLLG 428

Query: 436 AIFKLNDFMAIATLVKHPLAKFGF----------PEKYLSRAKNALELVALRGNKNSYDI 485
                     +  L +    +  F                           R   +   +
Sbjct: 429 LAGGRVTATEVLNLAQAAPVRARFGFTDDDLEAITRWVRQANIRWGLDQEHRRPYHVDFV 488

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
            +     +DRI      +   +     +    +++   V    Q    +       +S  
Sbjct: 489 HNTWRFGIDRILAGVAMSDDSNAWIDATLPLDDVSSNRVPLAGQFAEFVARLHHVVDSLT 548

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
           G  ++++W       + ++           W   + +   +       +         + 
Sbjct: 549 GTRTLTEWLATLAGAIASLTRVHE---SEEWQTGQVQREFAAVLAQAGSRGGTVLRLPDI 605

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
             ++TR + G   +    ++ TL +   +  R +    + L GL++G++P+    +   +
Sbjct: 606 RALLTRHLAGRPTR-ANFRTGTLTVCTMVPMRSVPHRVVCLVGLDDGLFPRLGVVDGDDA 664

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI-YTRSLRENNIPTIASRWLQRLLVLGG 724
              +     +       Q   D   A   + +I YT +   +  P   +  L  LL    
Sbjct: 665 LARRPMTGERDIRSEDRQLLLDAIGAATEKLVITYTGANEYSGQPRPPAVPLAELLDALD 724

Query: 725 TDFFDNLKKR 734
                 ++ R
Sbjct: 725 VTTPTKVRHR 734


>gi|262379497|ref|ZP_06072653.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|262298954|gb|EEY86867.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 194

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 60/187 (32%), Gaps = 19/187 (10%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITEL-IKKRINK 826
               S +  L + P    A+ +L                R GT  H  +T+      I +
Sbjct: 12  PIRASSLSDLFDCPARWEAKNLLNKRTP------AGARTRLGTAVHEAVTQWDYLNLIGE 65

Query: 827 N--TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF-HKISHSFLEHEEKIQSSIEKIFV 883
           +    E   ++   I     +E     +D        H +   ++ H    Q     I V
Sbjct: 66  DVTLEECEEILHHQIWQ-PNEEVDWSDLDQNAAEAIGHSLMQKYITHIAPTQKF---IGV 121

Query: 884 NIPAK-MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA---QKLIDPQLSL 939
            +  + + +  +GI LTG  DRI     G + I D K+G N              PQ+ +
Sbjct: 122 EVRCESLILADLGIELTGTIDRIYENNEGELGIGDLKSGKNAVASDGTVKTVGHTPQMGI 181

Query: 940 EAAALKA 946
                  
Sbjct: 182 YTVLASH 188


>gi|194333976|ref|YP_002015836.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
 gi|194311794|gb|ACF46189.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
          Length = 1064

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 97/936 (10%), Positives = 226/936 (24%), Gaps = 133/936 (14%)

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            + E+     +  + ++   VS+++R       I     +L    +     +      +  
Sbjct: 104  LDEKAALVQISRAIDIAVGVSHLER-------ITALSRRLGVTNRQTGEPAWKEHVKAII 156

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
            +        A+  +         E L                  + +      E L    
Sbjct: 157  DEARYNGISAEHFEEFAVSNAD-ELLAHFPAPLEEEPDEELLRSINLLKPAILEALTVKT 215

Query: 204  ASSPVGYQIALMR------------------AEAEHLMKGTKGPIIIAGSTGSIPATARL 245
              +   Y   L R                  AEA            +AG + S+ A  RL
Sbjct: 216  QKNTASYLNELERFARCLQAGTCSWAEWLKIAEARPQKSLHDNVARVAGLSASVAAHPRL 275

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-THP------------ 292
               +  +      + G+   +   + +           +    +  HP            
Sbjct: 276  HQDIRAYLKLVFSVAGMTLGVYQQLKHESGMIDFADQEAGLLDALDHPDVQEALQEKLDL 335

Query: 293  ----------QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                         LA  +    + R               R           D       
Sbjct: 336  LLVDEFQDTSPLQLALFVKLSQLARRTYWVGDIKQAIYGFRGGDARLMKAVLDIVPQECR 395

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEA-ISIAIALRMSLDENKKKSALITAD------ 395
            ++L +   ++      V  + ++   E+A  +I I+L    +E+  + +    D      
Sbjct: 396  EVLGDSWRSVPSLVEAVNDLFSETFSEQAGTTIDISLSPQREEHPSQISSFRWDLGRGKL 455

Query: 396  ----RNLARRVKLELTRFGINIDI--------SAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                  L+  +   L       D         S          ++ +  +   + + +  
Sbjct: 456  EEQYDALSAGIGRLLDERYQVFDKGCNVWRDVSFADIAVLARTNAHVRDIARVLNRNSIP 515

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
             A          +       L R  +  + VA     +     D +  +  R+   ++  
Sbjct: 516  SATVQPGLLATPEAVLVMAALRRVLDPSDTVATAEIYSLVTSCDPEEWLQHRLRYIRSGH 575

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                W     +    L         Q +  L  +    + +    +++            
Sbjct: 576  DKSLWMETGDDAHPAL---------QAVAGLRAHAALFSPSEALQAVTAAVGAAEHVQAW 626

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                +  ++  +  +   +       +     S    +    ++ +  L   E       
Sbjct: 627  CRNSDEARIRLMNLDTLLEFARRYEEE--SAASWQAVSISGLLNWLADLARDELDLFAEP 684

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----- 678
              + + +    +S+ L +  +IL  L+       +      SR + +   L+        
Sbjct: 685  PVNAVRVTTYHKSKGLEWPVVILLDLDSTSDALISHPMVVSSRKLDARDPLRDRRIRFWP 744

Query: 679  ---------------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
                                            A   +  A   R  +      +    + 
Sbjct: 745  SPFGSAKGFAGIDAVLQSDVLQEAQTLAGEEAARLFYVAATRARDCLVFAVPSKARSFSW 804

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT-- 769
             +      L+    D       R      W              R +P   +     +  
Sbjct: 805  LASAGAECLIDVHDDAIRLPGGRSLACRRWDDLAATVPAVRPGVREEPLSWISQPTASEV 864

Query: 770  -----YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
                  S S I    ND        ++      H K   D +  GT  H ++       +
Sbjct: 865  FYAENISPSRIT--ANDGVMAVVEEVVYDSDSCHIKGSVDMSVLGTAVHEVLAF---ALV 919

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
              +     H ++ I+  +     +            ++    F             + V 
Sbjct: 920  QDDGVCTPHHIRDILARYGLSGRMDSEA-------LYRRLRRFRAWLAMRWPEGT-LHVE 971

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
            +P +       + L G  D + +  +    I D+K+
Sbjct: 972  MPVQHVQPDRRV-LKGQIDLL-VAVNERWVIIDHKS 1005


>gi|237745022|ref|ZP_04575503.1| DNA helicase II [Fusobacterium sp. 7_1]
 gi|229432251|gb|EEO42463.1| DNA helicase II [Fusobacterium sp. 7_1]
          Length = 692

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 56/415 (13%), Positives = 140/415 (33%), Gaps = 61/415 (14%)

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL-NEGVWPKNTAK 660
              ++++I+ +    E    +   +  +  L   +S+ L F  +I+  L ++     + ++
Sbjct: 313  FTKYLEILKQSRVDEIFSEEDYPNDCIPFLTIHQSKGLEFPVVIVFSLYSKPNVSGDLSR 372

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQR 718
               + R++ S+  +   +K        F +A       L+ +   +  +       +  R
Sbjct: 373  QTSIDRLINSNSKISEIDKEYFDFYRKFYVAFSRAKNLLVLSCYEKGVSENFKPFFYSVR 432

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
             +     D                  LD  +K             + +      ++I   
Sbjct: 433  GVNSLQFDISQIN-------------LDEVSK------------KDERRILSYTTDIALY 467

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
               P   +      +    +   D    + G + H  I  + K  + K     ++ ++ +
Sbjct: 468  RYCPMKYFL-----VREKEYSTFDKKVFNLGIITHKAIEHINKSFLQKQEIFSDNYIEDL 522

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
            + + ++ +N+    ++        I   +++ E+     I+K+      ++        L
Sbjct: 523  VKNIYKFQNIDLDNNV---ERIIDIVKKYIKDEKDNFKYIKKVEA-SEFRVE---DNYIL 575

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQ--KLIDPQLSLEAAALKAGSFSQIDCRK 956
             G  D I   ++  + I D+KTG        +       QLSL    L+     +I    
Sbjct: 576  YGQIDLILEDEN-EIKIIDFKTGK---YNEIEFSSNYRQQLSLYKLLLQKKYDKEIK--- 628

Query: 957  VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN---GEQPF 1008
               L+Y+        +     K+    DE  ++ L+N+ + V  + +    + P+
Sbjct: 629  -TYLYYL--------EEDEPKKEILIDDENLKEDLENINKTVQDILDKKFPKIPY 674


>gi|150377541|ref|YP_001314136.1| hypothetical protein Smed_5441 [Sinorhizobium medicae WSM419]
 gi|150032088|gb|ABR64203.1| hypothetical protein Smed_5441 [Sinorhizobium medicae WSM419]
          Length = 853

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 56/594 (9%), Positives = 135/594 (22%), Gaps = 62/594 (10%)

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITAD 395
            + +                 + +    + REE    A   +  + +  +     L+  D
Sbjct: 173 ALGHVQQHLLATSPPVAPDDTLQVFGLRDPREEIAFAAARAQALIRQGYRAQDIGLLVPD 232

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTT-LHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +                   PLS        LT+LL  +      MA+A++   PL
Sbjct: 233 DPAYQLAIEPAFTRVGLQLSGMAAPLSLRDHAGEFLTNLLAIMRGPAPRMALASICISPL 292

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
            ++                                  + +  +      +    +     
Sbjct: 293 TQWPADAGRDFA----------------------SEYIENGWSRAARAYNGLGAKIFDEL 330

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                   L+  +      L               +     L    +    L        
Sbjct: 331 RPVSTPGQLIARLCSIANELFDPAQLMPRINALRPL-----LRGEYIDWSSLARVVAPAA 385

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           L  +EEG+     F + +   S           +I     G      +  +         
Sbjct: 386 LTPDEEGR-----FVEGVSVFSETALPWRSVRHLIVAGAAGTYWPRPVAANPFFT----- 435

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
                  + +++ G      P           + +  L + T    +  +A D E     
Sbjct: 436 -----ESEIVMIEGATNLKLPSRRQTLARRLELFRRQLGVATDGITLTASARDLEGKQLA 490

Query: 695 RHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
                +   R+L  N+   + +  +                             + +   
Sbjct: 491 PTTGLSLIARALGANDAEALIADAVDHAQSSQTHGGAITSDAHWDEENTRPVLPEGSEIG 550

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                       +   +  S S ++ ++  P A     I   +      +  D    G L
Sbjct: 551 IPGDPFALGKAADGATKPQSPSRLETMLVSPLAWLLGEI-GAEDRTWAPELLDVLTLGKL 609

Query: 812 FHNIITELIKKRINKNTPEINH-LMKQIIDSHFEKENLP-------PHIDIIWRHLFHKI 863
            H+ +  L  +  +               ++   +                + R      
Sbjct: 610 VHSTLETLFPEGASGLDETAIRVAFPAAFETAITQSAPWLVGDNWVSERTNLARETLEAA 669

Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
             ++        + + ++   +          + + G AD +  L    + + D
Sbjct: 670 L-NWGRFLIDNGARVRRVETLLSGAY----HHLSINGRADCLLELADDRIMVVD 718


>gi|295116233|emb|CBL37080.1| Superfamily I DNA and RNA helicases [butyrate-producing bacterium
           SM4/1]
          Length = 618

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 69/708 (9%), Positives = 173/708 (24%), Gaps = 141/708 (19%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-PIIKSL 81
             ++   +        +NP   +S+ +   T+ A +E++  F  +   +         + 
Sbjct: 29  TTVVTHRVQSLIERHGVNP---SSILVITFTRAAAREMKERFERLMEGRCLRGQVSFGTF 85

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             V            Y     +   QRL  +  L+                       + 
Sbjct: 86  HAVFFRILKLAY--GYEAADIIREDQRLRFMRELVAK-------------------EQLE 124

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL--AADFLKIASKYWTERL 199
           P +   L  +L   I  ++ E    +            ++    + +  K     + ERL
Sbjct: 125 PEDENELIASLLSEISSVKGELIDLD-----------HYYAKSCSGEAFKRIYAGYEERL 173

Query: 200 VELNASSPVGYQIALMRAEAEHLMKG-----TKGPIIIAGSTGSIPATARLMSTVANHPN 254
                       +       +              I++            ++  +A   N
Sbjct: 174 RRNRKIDFDDMLVMCYELFRQRPDILGAWQKKYAYILVDEFQDINRLQYEIVRMLAAPRN 233

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
              ++   D       +     +       +   +             LD+     K + 
Sbjct: 234 NLFIV--GDDDQSIYRFRGARPEIMLGFERDYPDAGRVL---------LDVNYRSTKEIV 282

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
           + S  + G +                     +  +         V      +E EE   I
Sbjct: 283 DASLRLIGNNEK-----------------RFKKSLRTAGSRGRKVITRVWKDEEEENSRI 325

Query: 375 AIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIP-LSTTLHSSILT 431
           A  +RM  +     +  A++    +  RR+  +L  + +       +P L     S  + 
Sbjct: 326 AEEIRMYSEAGCAYRDIAVLYRTNSGPRRLIEKLMEYNLPFKARDVVPNLYEHWISKNIL 385

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
           + +       +   +  ++  P            +          R      + ++    
Sbjct: 386 AYIRVALGSRERGEVLQMINRPARYISRDALQAPQISFDEVKGYYRDKDWMVERIESLEF 445

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            L  I                                  ++PL      + S   +  + 
Sbjct: 446 DLTAI--------------------------------SRMSPLAAVNYIRKSVGYDAWLY 473

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
           ++                +   +    +      S  S+  E                  
Sbjct: 474 EYAAAHRMKADEFLETADQLKESAARYKTFDAWFSHISEYGEELK--------------- 518

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
                  + + + +  + +     S+ L +  + +   NEGV P + A            
Sbjct: 519 ----RQAREREQTADAVTLSTMHSSKGLEYRVVYILDANEGVTPHSKA------------ 562

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN-NIPTIASRWLQR 718
                      +    +      +  ++  S++E  + P   SR+++ 
Sbjct: 563 ---VLDADIEEERRLFYVAMTRAKQRLHVYSVKERYHKPAEVSRFVEE 607


>gi|134108923|ref|XP_776576.1| hypothetical protein CNBC0690 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259256|gb|EAL21929.1| hypothetical protein CNBC0690 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1089

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 65/263 (24%), Gaps = 34/263 (12%)

Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPAT 242
               +    + +   L E N+       +  +R   E          I++     +    
Sbjct: 186 TLAVIADLYEEYQLALTEANSLDFDDLLLYALRLFKEAPRVVENIRHILVDEFQDTNTTQ 245

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             L+   A    G  V+   D       W +   ++ N  + +                 
Sbjct: 246 YELLKRFAKAHKGVSVV--GDPDQSIYGWRSAEIENLNKMTKDFP--------------- 288

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                      G  +  +                   ++   ++  +       + V L 
Sbjct: 289 -----------GVEAIYLEENYRSTGSILDAAHAIVSQDRQRIQKSLFTSHPKSAPVTLK 337

Query: 363 EADNEREEAISIAIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISA 417
                  EA  I+  ++  +  +         A++     L+R ++  L +  I   I  
Sbjct: 338 VFSTPVIEASFISTEIKRLIAYSGGLLRYDDFAILLRYNALSRVIESSLQKDSIPNRIVG 397

Query: 418 GIPLSTTLHSSILTSLLNAIFKL 440
           G      +    L + L      
Sbjct: 398 GHKFFERMEIKDLLAYLQLADNP 420


>gi|167582408|ref|ZP_02375282.1| exodeoxyribonuclease V, gamma subunit [Burkholderia thailandensis
           TXDOH]
          Length = 899

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 83/884 (9%), Positives = 193/884 (21%), Gaps = 71/884 (8%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDVAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA+ +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDDGAAPWRGSPRLAAYLAAADAPMRHELAQRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W          + +          A D     +  W   L EL+ S        L  
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 217 A------EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
           A         H        + +       P    L+  ++   +  I             
Sbjct: 203 AGTFDPGVIAHAQAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCR----EF 258

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
           W  I   +   +        + Q     L ++    +  +  L  ++             
Sbjct: 259 WFDIVTAARVESLDAADQLDYQQVGHPLLAEWGRQTQAQLHMLHELTESAAASDASRYAE 318

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFS---DVALIEADNEREEAISIAIALRMSLDEN-- 385
              P         IL+ +  +          V +    +   +   +   L    D +  
Sbjct: 319 NPAPTWLARVQNAILDLQPEDALGAPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPS 378

Query: 386 --KKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                  +   D   A  +   +           I   I+   P      + +L   L  
Sbjct: 379 LAPSDVLVAMPDLAAAGPLIDAVFGTSSGADAARIPYRITGLPPSHANPVARVLLDWLAL 438

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
             +      +   ++             + A  A   +     +     +          
Sbjct: 439 PERNVGAPELVEWLR-------------ADAIAARYGIDATALETVQTWLAASGARRGLA 485

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                  +      R +  D    + L   +     P+ T+     +  G   +      
Sbjct: 486 PDAAEPPNAAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLAR 545

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG--------------------S 596
               L        R L    + +      + F                            
Sbjct: 546 FTDDLDGFAQRIARDLTPQDWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEG 605

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             +A     +         +           +        R L +  + L G+++GV P 
Sbjct: 606 AGRAELPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPS 665

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
               + F    + + L  +           D  +A   R LI        +   +    L
Sbjct: 666 LARADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARDRLLIAYTGRSIRDNAPLPPAAL 725

Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
              L+                     R          +      P         S + + 
Sbjct: 726 VDELLDHLATVSAGPDASPDAVDAARRAFVIEHPLQPFSADYFAPGGALFTYDASRATLA 785

Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
           +L+ +     A             +     D    + +    L++ R+     +    + 
Sbjct: 786 RLLAEGGRAQALPFFSEPLPAEPAEPVAFADFERFWRHPARSLLRARLGIVLWDAQAELV 845

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
              +           +      L  + + +         +    
Sbjct: 846 D-TEPFELDYAGSDALAGRVLPLLIETADAGAFEHALRVADASP 888


>gi|332300449|ref|YP_004442370.1| UvrD/REP helicase [Porphyromonas asaccharolytica DSM 20707]
 gi|332177512|gb|AEE13202.1| UvrD/REP helicase [Porphyromonas asaccharolytica DSM 20707]
          Length = 1123

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 87/846 (10%), Positives = 206/846 (24%), Gaps = 122/846 (14%)

Query: 185  ADFLKIASKYWTERLVELN--ASSPVGYQIALM------RAEAEHLMKGTKGPIIIAGST 236
               L    +   +   EL           I  +       A     +       +I    
Sbjct: 330  LQLLGEIQENVYKVSEELGITLLDDAKRLIRTLVSGEGSTAFIYERLGTKLTHHMIDEFQ 389

Query: 237  GSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH--- 291
             +          +      +   +    D       +            S          
Sbjct: 390  DTSRFQYENFVPLLEEALSSSGEIFIVGDVKQSIYRFRNSDPMLLQNDLSKDFPKDQQTL 449

Query: 292  --------------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                                 LL +    + +   L     +       +          
Sbjct: 450  NLPNNWRSAPAIVSFNNRFFSLLPYASELKLESSNLIQKVYDPEEVHQEVPDPNQNKIGG 509

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLDENKKKSAL 391
               +      +I        +    E     +    I   LR                A+
Sbjct: 510  VFIHQWEKTPEISQPTAATEEDDNAETTPPSQLQTKIDYLLRHVIPSIRERGYKLSDIAI 569

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +T + +  +R+   +  +   ++            + +   +L+        + I  +++
Sbjct: 570  LTPNNDTLQRIAQAIILYNKELENDKNKNQHLQPLAFVSREMLSLDANPLYRL-IVEIMQ 628

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
              L   G  E+                  +      L       +A   +++        
Sbjct: 629  SVLVNAGASEE----------------LYSKSFEHRLAVTHYAELARSLSDSPALDLARC 672

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
              E        L   I++ + PL+T            ++ D+++     LQ         
Sbjct: 673  YQEGLSASLYELTLLIVEIVRPLITSADQSYIDALLDTVQDYSQDNYVDLQGFLEWLETH 732

Query: 572  LPNL--WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
             P L    ++  + L       I +   +    +  ++   RL++        ++     
Sbjct: 733  TPRLSLETQDALQLL------TIHSAKGLGFPVVCLLEYQMRLLEHTDTIWCRDEE---- 782

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                 E   L    + +  L   + P   A++      + ++ +L   ++        + 
Sbjct: 783  --IMAELHKLLGGNVEIPTLL-PISPTKEARSTLFREKIVAEEHLALLDRINA----FYV 835

Query: 690  MANGTR---HLIYTRSLRENNIPTIASRWLQRL-------LVLGGTDFFDNLKKRGQCYL 739
                 +   HLI + +  ++       R +  L             D         QC  
Sbjct: 836  AMTRAKSEMHLILSENKGQSGTSINFERLISELVTQIQEPGHNQKPDLLSQETIDLQCSE 895

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA--VYARRILKLDFIP 797
                  +    +      +  P       T   S+  +L++ P    + A   L++    
Sbjct: 896  LKASPSEDAEIKQRIFYYQTDPTTAPPKPTTPSSDTSRLVSIPGREQIGALAQLRVRRSQ 955

Query: 798  HFKKDP-DRTDRGTLFHNIITEL-------------IKKRINKNTPEINHLMKQIIDSHF 843
                   D    G   H +++E+             +K        +    + ++++   
Sbjct: 956  SVSYQAQDAVRNGLFLHALLSEIDYLEHDELVKLLDMKCLQGLIPQDQRDALAKLLEQAL 1015

Query: 844  --EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
               K          W+ +  +   S +   +  +S   +  +                  
Sbjct: 1016 TDPKIAEYYDRSSGWQVINER---SIVRLSQDTESETRQARIE----------------R 1056

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
             DRI   +     I DYK+G   + +   +    QL     AL    F ++     A L 
Sbjct: 1057 PDRILYDEEQQAVIIDYKSGG--EAQQYTERHKRQLRSYRKALLESGFKRVC----AYLL 1110

Query: 962  YIRLKQ 967
            Y+    
Sbjct: 1111 YLSADG 1116


>gi|167562256|ref|ZP_02355172.1| exodeoxyribonuclease V, gamma subunit [Burkholderia oklahomensis
           EO147]
          Length = 906

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 72/866 (8%), Positives = 185/866 (21%), Gaps = 37/866 (4%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDVAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPV 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDDGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W          + +          A D     +  W   L EL+ S        L  
Sbjct: 143 RPEWLAQWQEGESIFALEGAPRHGGDAARDDETWQAALWRALLAELSDSGIPPAHRFLRD 202

Query: 217 A----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            + +       P    L+  ++   +  I            I  
Sbjct: 203 VGSLDLDIVAHAKWPESVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDIVT 262

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               +S +               LA+       +   +  L   +          + +  
Sbjct: 263 AARAESLDAADQLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYAENPAPT 321

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKK 388
                     ++              + +    +   +   +   L   LD +       
Sbjct: 322 WLARVQNAILELQPEDALGEPPEGRGIEVHVCHSLARQLEVLHDRLLAWLDADPSLAPSD 381

Query: 389 SALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
             +   D   A  +   +           I   I+   P      + +L   L    +  
Sbjct: 382 VLVAMPDLAAAGPLIDAVFGTTSGADAARIPYRITGLPPSQANPVARVLLDWLALPERNV 441

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALE-LVALRGNKNSYDIMDLKSLVLDRIATQK 500
               +   ++       +     +          A      + D  +  +  +  +    
Sbjct: 442 GAPELIEWLRVDAVAARYGIDAAALETVQTWLAAAGARRGLAPDAPENANTAVPALRHTF 501

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
            +     +      +        +                   T      +      +T 
Sbjct: 502 ADALTRLFLGYAMPDGAAPVSTWLPISGAEGGEAELLGRLARFTDDLDGFAQRIAGDLTP 561

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                                    S     ++      A     +++   ++       
Sbjct: 562 QGWGDAFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAGGVELPAAVVRAGLAAA 621

Query: 621 KIEKS------STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
             + +        +        R L +  + L G+++GV P  T  + F    + + L  
Sbjct: 622 LDDPARGGVPWGGVTFSSLTSLRGLPYRVVCLIGMDDGVLPSLTRADEFDLMAVFAKLGD 681

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
           +           D  +A   R LI        +   +    L   L+             
Sbjct: 682 RQRRDDERNLFLDLLLAARDRLLIAYTGRSIRDNAPLPPAALVDELLDHLATVSAGPDAP 741

Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                   R          +      P         S + + +L+ +     A+      
Sbjct: 742 PDAIDAARRAFVIEHPLQPFSAEYFAPGGTLFTYDASRATLARLLAEGAQAAAQPFFSRP 801

Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                 +     D    + +    L++ R+     +    +    +           +  
Sbjct: 802 LPAEPAEPVAFADFERFWRHPARALLRARLGIALADAQAELVD-TEPFELDYAGSDALAE 860

Query: 855 IWRHLFHKISHSFLEHEEKIQSSIEK 880
               L  + + +         +    
Sbjct: 861 RVLPLLIETADAAAFEHALRVADASP 886


>gi|229593437|ref|YP_002875556.1| DNA-dependent helicase II [Pseudomonas fluorescens SBW25]
 gi|229365303|emb|CAY53652.1| DNA helicase II [Pseudomonas fluorescens SBW25]
          Length = 727

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 58/591 (9%), Positives = 130/591 (21%), Gaps = 104/591 (17%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
            + R L LA        +L+ R      +++  P S LS+  +   A  +   +  ++  
Sbjct: 23  PVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRHRIEQLMG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  ISPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDDQQRLVKRVIRELGLDEQRWPA 141

Query: 198 RLVE---LNASSPVGY----------------------------------QIALMRAEAE 220
           R  +                                                 L+RA   
Sbjct: 142 RQAQWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYEAACVRAGVIDFSELLLRALDL 201

Query: 221 HLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            I++     +       +  +A   +  +V+   D       W 
Sbjct: 202 WRDNPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAKGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++    S +                              V+  +       +    
Sbjct: 260 GAKIENIYQYSEDFPD--------------------------AVTIRLEQNYRSTAGILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +     NT  L  ++         + L  A NE +EA  +   +  +L     +   A
Sbjct: 294 AANALIANNTGRLGKELWTDGGEGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + L  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYL-SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
             P    G              ++      +       L       +            +
Sbjct: 414 NIPARGIGEKTVEAIRDHARHADVSMWEAMRLLIANKGLTGRAAGALGVFVELIENLAAK 473

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
                       ++    L         +  +        +    +      ++  L   
Sbjct: 474 CAEMPLHLMTQTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARAFENTEEDEELTPL 533

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                    E G T +      I+  +   A  +E+  +    ++      
Sbjct: 534 AAFLGHASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPH 584


>gi|227874195|ref|ZP_03992397.1| ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268]
 gi|227839950|gb|EEJ50378.1| ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268]
          Length = 793

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 68/697 (9%), Positives = 178/697 (25%), Gaps = 130/697 (18%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPI------IKSLGDVVEEKFTADLL-LSYN 98
            +     T +A QE+R    +       +LP       + +   +       ++  L Y+
Sbjct: 53  QILAITFTNKAAQEMRDRVNQ-------LLPERQGEIWVSTFHSMCLRILRREIGNLGYD 105

Query: 99  LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
            +  + +      + R +         ++K+    S                     +  
Sbjct: 106 SDFSIYDTDDQKTVMRQVFKELQIDSKMLKERLVLSA--------------------LSQ 145

Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
           ++ + +   D      E +          ++   + + E+L + NA       +      
Sbjct: 146 VKNQGRSVSDYLLEDPEDFLD------GKIRACIRLYEEKLKQNNALDFDDLLLRCKELF 199

Query: 219 AEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            +        +     I++     +      L+  +A       V+   D       +  
Sbjct: 200 EKFPAVLEKYQERFRYILVDEYQDTNDVQFHLVYLLAKKYQNICVV--GDDDQSIYRFRG 257

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
              ++     S+                  + K   +++    +  +   + V+      
Sbjct: 258 ANVENILSFESHFP----------------NCKVVKLEQNYRSTAPILDLANVVIAENQH 301

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393
                +   +    K          V+  E ++ +EEA ++   +R +   + K  A++ 
Sbjct: 302 RKQKKLWTAEKEGLK----------VSFQEYESAKEEAAAVIRGIRDAG-WSYKDQAVLY 350

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +R ++ +   + I   I  G+          + S +  +    D +A+  ++  P
Sbjct: 351 RTNAQSRLLEEQCIHWNIPYQIVGGVNFYQRKEIKDILSYMKILVNKKDDVALRRIINVP 410

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G       +                     L    L           +      + 
Sbjct: 411 KRGIGEASLLKLQ----------------QYGESLGGFSLVESLPFAKAAGLSGKALSMV 454

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
              +E+     D     ++ L+           +L      +                  
Sbjct: 455 GSFQEMLESWKDVE---LSALIDRILQDTEYEKDLQAEGAIEAESRM------------- 498

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                E  + L       IE               +  +     +         + ++  
Sbjct: 499 -----ENIQELQGKLQSYIEENGDEG----SLSAFLEEVSLLSDLDRSDLTEDKITLMTL 549

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + L GLNEG++P   +              + T E+   +    +     
Sbjct: 550 HGAKGLEFPVVYLVGLNEGLFPSAQS--------------MFTPEEREEERRLFYVGITR 595

Query: 694 T-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             + L  T            S  +   +     +  +
Sbjct: 596 AEKELYLTAGRDRVVHGQYQSMLVSSFVDDVPEEHLE 632


>gi|91205500|ref|YP_537855.1| DNA helicase II [Rickettsia bellii RML369-C]
 gi|122425652|sp|Q1RIP8|UVRD_RICBR RecName: Full=Probable DNA helicase II homolog
 gi|91069044|gb|ABE04766.1| DNA helicase II [Rickettsia bellii RML369-C]
          Length = 653

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/418 (10%), Positives = 108/418 (25%), Gaps = 64/418 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPV 103
            ++     T +A +E++     +          I +   +        +  L+  LN   
Sbjct: 55  QNILAVTFTNKAAKEMQERVHNLVSSYGL---NIGTFHSMAARILRDQIEHLNLGLNSRF 111

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           + I +  +L RLI           K   P+    +                 I   + + 
Sbjct: 112 TIISQDDQL-RLIKDIVKLKNIDTKKYAPKLIHIV-----------------ISRWKDQG 153

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                L +       +     A       + + + L+  N        +       ++  
Sbjct: 154 LLPNKLSS---SDTNLPLQRVAKL---VYEEYQQNLLISNVVDFGDLLLYNNELFIKNPD 207

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I+I     +          +A+       +   D       W      +
Sbjct: 208 ILKHYQERYRYILIDEYQDTNVVQYLWARMLASLSKNICCV--GDDDQSIYGWRGAEVGN 265

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +          L   +  L+        +   ++ +   +              
Sbjct: 266 ILRFEKDF---------LNATIIKLEQNYRSTLPILAAASNVINNNK------------- 303

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395
               +     +   ++    + +I   N++EEA  IA  +   + E +      A++   
Sbjct: 304 ----NRHGKTLWTDKESGEKIKIISCWNDKEEARYIAAEIARLVREGRYSAGNIAILVRA 359

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
               R  +       +   I  G+     +    + + +      ND +A+  ++  P
Sbjct: 360 GFQTRSFEEAFINSAMPYKIIGGLRFYERMEIRDVLAYIRIALNQNDNLALERIINVP 417


>gi|329894920|ref|ZP_08270719.1| UvrD/REP helicase family protein [gamma proteobacterium IMCC3088]
 gi|328922649|gb|EGG29984.1| UvrD/REP helicase family protein [gamma proteobacterium IMCC3088]
          Length = 1097

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 73/805 (9%), Positives = 192/805 (23%), Gaps = 97/805 (12%)

Query: 176  KYGMWWLLAADFLKIASKYWTER---LVELNASSPVGYQIALMRAE--------AEHLMK 224
                 W +    + I             +           A + A             + 
Sbjct: 326  DDDQNWQIVTSIVAILPHLLASFWWQCQQRGEVDFTQIASAALEALGDDENPTDLALKLD 385

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
             +   +++     +      L+        G      +    P  ++  + +   +I   
Sbjct: 386  YSIQHLLVDEFQDTSTHQFELIR---RLTRGWFEHNQITPESPKTLF-VVGDAMQSIYRF 441

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                      ++ +  + L ++R D+ R    +  +     V       P  S      +
Sbjct: 442  RGAQVDLFVRAIEEGFNGLRLERLDLCRNFRSTGGI--VQWVNQVFADLPSHSSPMIKRL 499

Query: 345  LENKIPNIQKCFSDVALIEA---DNEREEAISIAIALRMSLDENKKK-SALITADRNLAR 400
              N+   +    +D+ L       N   E   +   +R  L+ +     A++   R+   
Sbjct: 500  AANRAEPVLGGETDIQLHAFAADPNAARETEFVVERVRSWLEADASTTIAVLGRTRSQLA 559

Query: 401  RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
             +   L   GI  + +    ++  +  +   ++L  I   +D +A    ++ P       
Sbjct: 560  PIMKSLKDAGIAYNAADVERIADNVAVADFVNVLRVIVDPSDTLASMACLRAPWIGASLE 619

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
              + ++  +A                 L+    D              +       +   
Sbjct: 620  VLHQAQTIHARLDT----GDWHSSFHALEQDSEDLELQGCLARFNAVIRWGFVFRGRRAV 675

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
             L ++ + + +     Y ++++                  L+                E 
Sbjct: 676  RLWLETLWEGLAGFSIYSSDRDHV--------AIDTLFEVLEQNPWTIDSPWEITELLES 727

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
                 ++ S+     S +  +  + ++    ++       +               +   
Sbjct: 728  ----KTITSQRSSRVSVMTMHKSKGLEFDHVVLPSMGRSSRSSSRQLFEWAELPVPQSYG 783

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
            F    L G ++G      +   +L    +  L               +  A   +  +Y 
Sbjct: 784  F----LLGCSKGAETAGLSVGNWLHEREKIAL-------NDELKRLFYVAATREKRTLYI 832

Query: 701  RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
             +  +   P                   +  +      L    +L       H   P+  
Sbjct: 833  TTSYKQQDP-------------------ERCRPAKGSLLGQVTQLSSHECSWHVI-PEAS 872

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP---HFKKDPDRTDRGTLFHNIIT 817
              +       S   I + +           L                   +G+L H    
Sbjct: 873  EEISGAGSNLSPMRIARFVPATNDALPDSCLTGVEHDLVVAQDWLESSAVQGSLVHKAFE 932

Query: 818  ELIKKRINKNTPE-INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS------FLEH 870
              I+          +   +     S                 +    + +      F+  
Sbjct: 933  LAIRAGQLPRCDAYLRGRLFHEAVSLGYPAAKADECVEQALSVIQVTAGNPSAHWLFVGD 992

Query: 871  EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL-LKSGFVDITDYKTGDNPKKETA 929
            + +                   + G   + + D +        + I DYKT   P     
Sbjct: 993  QWQRYP-------EYSVSRR-AADGFE-SYYIDLLLRSTSDDRLRIVDYKT-TMPDPSET 1042

Query: 930  QKLIDP--------QLSLEAAALKA 946
             +  +         Q+++  A +  
Sbjct: 1043 PQDFERRMLETYQAQMNIYVAIISK 1067


>gi|260494799|ref|ZP_05814929.1| DNA helicase II [Fusobacterium sp. 3_1_33]
 gi|260197961|gb|EEW95478.1| DNA helicase II [Fusobacterium sp. 3_1_33]
          Length = 919

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 56/415 (13%), Positives = 140/415 (33%), Gaps = 61/415 (14%)

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL-NEGVWPKNTAK 660
              ++++I+ +    E    +   +  +  L   +S+ L F  +I+  L ++     + ++
Sbjct: 540  FTKYLEILKQSRVDEIFSEEDYPNDCIPFLTIHQSKGLEFPVVIVFSLYSKPNVSGDLSR 599

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQR 718
               + R++ S+  +   +K        F +A       L+ +   +  +       +  R
Sbjct: 600  QTSIDRLINSNSKISEIDKEYFDFYRKFYVAFSRAKNLLVLSCYEKGVSENFKPFFYSVR 659

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
             +     D                  LD  +K             + +      ++I   
Sbjct: 660  GVNSLQFDISQIN-------------LDEVSK------------KDERRILSYTTDIAIY 694

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
               P   +      +    +   D    + G + H  I  + K  + K     ++ ++ +
Sbjct: 695  RYCPMKYFL-----VREKEYSTFDKKVFNLGIITHKAIEHINKSFLQKQEIFSDNYIEDL 749

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
            + + ++ +N+    ++        I   +++ E+     I+K+      ++        L
Sbjct: 750  VKNIYKFQNIDLDNNV---ERIIDIVKKYIKDEKDNFKYIKKVEA-SEFRVE---DNYIL 802

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQ--KLIDPQLSLEAAALKAGSFSQIDCRK 956
             G  D I   ++  + I D+KTG        +       QLSL    L+     +I    
Sbjct: 803  YGQIDLILEDEN-EIKIIDFKTGK---YNEIEFSSNYRQQLSLYKLLLQKKYDKEIK--- 855

Query: 957  VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN---GEQPF 1008
               L+Y+        +     K+    DE  ++ L+N+ + V  + +    + P+
Sbjct: 856  -TYLYYL--------EEDEPKKEILIDDENLKEDLENINKTVQDILDKKFPKIPY 901


>gi|328948419|ref|YP_004365756.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
 gi|328448743|gb|AEB14459.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
          Length = 675

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/419 (11%), Positives = 109/419 (26%), Gaps = 75/419 (17%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + +     T +A +E+     E+TGKK   L  + +                        
Sbjct: 55  SQILALTFTNKAAKEMEERIKELTGKKLNNL-TVSTFHAFGVRIL--------------- 98

Query: 105 NIQRLLELARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                 E+ +L      +   +  K    +         A+A+ L K ++ +   I+T  
Sbjct: 99  ----RQEITKLGYRENFSIYDETDKKALIKESGRELKFSADAMDLYK-ISTLFSDIKT-- 151

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                            W   +D  +   + +   L   N+       +  ++   E+  
Sbjct: 152 -------------GRKSWNSESDMYRSLYEEYQSGLKLFNSVDFDDLIVLPIKLFKENPE 198

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I++     +      +M  +AN      +    D       W     ++
Sbjct: 199 VLEAYRNRFRYIMVDEFQDTSHQQYEMMHLLANKN----IAVVGDDDQSIYSWRGADFQN 254

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +                                  +              +   
Sbjct: 255 IINFEKDFPD--------------------------VTEIRLEQNYRSTGTILAAANGVI 288

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKKKSALITAD 395
             NT+  + ++ +       + L   +NE  EA  IA  +    +    N     ++   
Sbjct: 289 KHNTNRKDKELWSGNGNGKPIELYSPENEAAEADFIAEGILGISVDEKRNYDDFGVLIRA 348

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
              +R ++       I   +S G           + S L  I   +D + +  ++  P 
Sbjct: 349 NTQSRAIEEAFLENNIPYTMSGGTSFFERKEIKDIISYLRVIANHDDDINLLRIINTPR 407


>gi|284031864|ref|YP_003381795.1| exodeoxyribonuclease V subunit gamma [Kribbella flavida DSM 17836]
 gi|283811157|gb|ADB32996.1| exodeoxyribonuclease V, gamma subunit [Kribbella flavida DSM 17836]
          Length = 1102

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 95/882 (10%), Positives = 227/882 (25%), Gaps = 66/882 (7%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK------KSTILP 76
             +L   L E       +P   A   + VP K   + L        G             
Sbjct: 11  TDVLADGLGELLATPLADP--FAEELVVVPAKGIERWLSQRLAHRLGAAEGSGDGVCAGV 68

Query: 77  IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
              S   +V      D    +  +     +  +L+ + L   W   +   +      +  
Sbjct: 69  RFTSPRSLVSAVLGLDQDDPWAADAMAWPLLAVLDES-LDDAWCEPVARHLGQFDSGAEA 127

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYW 195
            L      A+            ++        L    +        +   D L    + W
Sbjct: 128 ELRRGRRYAVAARLARLFAAYAVQR----PALLVDWGDGRDTDGRGVTIDDDLAWQPELW 183

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTGSIPATARLMSTVANHPN 254
              +  ++A  P    ++ +    +          + + G T        L+S +A H +
Sbjct: 184 RRLVDRIDAPPPPARHLSTVAQLRDRSESLDLPARLSLFGHTRLPLTEVELLSALAEHRD 243

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             + LP     +          + T  T+ +    T  Q +   LL  L     +++   
Sbjct: 244 VHLWLPHPSGELWD--------RLTGRTAGDRAADTSHQMAEHPLLATLGRDSRELQLAL 295

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDI-LENKIPNIQKCFSDVALIEADNEREEAIS 373
                +       +                 +  +          V +        +   
Sbjct: 296 AAVPAVDRHLPSPAARESLLGWLQNDLRGNKVSAEGRRPAAEDRSVQVHACHGTARQVDV 355

Query: 374 IAIALRMSLDEN----KKKSALITADRNLARRVKLE------LTRFGINID----ISAGI 419
           +   L   L  +     +   ++  D      +         L R+G          A  
Sbjct: 356 LRDVLLGMLQADPTLEPRDILVMCPDIETYAPLISARFGLGDLDRYGHPAHRLRVQLADR 415

Query: 420 PLSTT-LHSSILTSLLNAIFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAKNALELV 474
            L+ T     + + LL+          +  L +        +F   +     A      V
Sbjct: 416 SLTQTNPLLGVASQLLDLAGSRATASQVLDLAETEPVRRRFRFTDDDLDTVTAWVREAGV 475

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNN-------THVPHWQSRLSEEDKELAVLLVDHI 527
               ++   D   L     +      +        +   H     +    ++    ++  
Sbjct: 476 RWAFDRGDRDRFGLADYPQNTWRFGLDRVLAGVTMSADAHAWIGTTLPLDDVGSTRIELA 535

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            +    +   +   +   G   ++ W       ++ +         + W   +     + 
Sbjct: 536 GRFAEYVDRLRAATDRLDGTQPLATWLDALRDGIERLTRVGAD---DGWQVGQVHREFAE 592

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
            +      +       +   +++  + G   +    +S +L +   +  R +    + L 
Sbjct: 593 VAAGAGELAVTPLRLPDVRSLLSAHLAGRPTR-ANFRSGSLTVCTMVPMRSVPHRVVCLL 651

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI-YTRSLREN 706
           GL++GV+P+    +             +       Q   D  +A     +I YT +   +
Sbjct: 652 GLDDGVFPRFGLADGDDVLARCPVTGERDVRSEDRQLMLDAILAATESLVITYTGANEYS 711

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP-----KPFP 761
             P   +  L  LL          +++                +      P      P  
Sbjct: 712 GQPRPPAVPLGELLDALDRTTESPVRETVVVNHPLQPFDRKNLEAGRLGTPGPFTFDPAA 771

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
            + A+    S       + +P  +     + L  +  F +DP            +   + 
Sbjct: 772 LVAARVGGGSRPPRPAFLAEPLTLPGGEDVALADLLAFFRDP-VKGFFRALDVTLPWEVD 830

Query: 822 KRINKNTPEINHLM-----KQIIDSHFEKENLPPHIDIIWRH 858
              +    EI++L       +++       +    ++  WR 
Sbjct: 831 GVSDAMPVEIDNLEKWSVGDRMLRDMLAGIHPDAALNAEWRR 872


>gi|315930546|gb|EFV09586.1| hypothetical protein CSS_0369 [Campylobacter jejuni subsp. jejuni
            305]
          Length = 117

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 40/140 (28%)

Query: 889  MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG- 947
            + + +  I L G  DRID  K G + I DYK+G  P           QL+   A      
Sbjct: 7    LKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN-------SYQLAFYQALYDENA 58

Query: 948  --SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
               F  ++  ++                    +K  S DEL     + L ++V L+   E
Sbjct: 59   SVGFYDLNSMQI------------------LHQKAKSLDEL----RERLKDLV-LMSKEE 95

Query: 1006 QPFISHLRLSEKSNIQSEYD 1025
              F        + +    Y 
Sbjct: 96   IEF------ENEQDEYCPYK 109


>gi|218671399|ref|ZP_03521069.1| hypothetical protein RetlG_06913 [Rhizobium etli GR56]
          Length = 56

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 992  KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037
              LI+ V+LLQ+GE+ F S L  +++ +   +YDHLARV+EW    
Sbjct: 3    DQLIKFVSLLQSGEKGFTSRLIPAQQFDFGGDYDHLARVSEWSTAE 48


>gi|258650842|ref|YP_003199998.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
 gi|258554067|gb|ACV77009.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
          Length = 676

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 61/537 (11%), Positives = 136/537 (25%), Gaps = 48/537 (8%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII-KSLGDVVE 86
            TL           +    V +   T+RA  E+ S    +  +      +   +   V  
Sbjct: 37  RTLTARVASLLDRGVPAERVLLLTFTRRAADEMVSRAARLCTQPDAGQRLAGGTFHAVAH 96

Query: 87  EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
                       L P VS + R                D    +                
Sbjct: 97  AVIGRHTEA-LGLPPAVSVLDR---------------ADATDVMDLLRHDHGLDGTDRRF 140

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             A  L DI             L                +  +       +R +      
Sbjct: 141 PRAATLVDIYSRAVNTGVPARALIKTDFGWVQPHVDAVMELFRAYVARKRDRGLLDFDDL 200

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
            + ++  L        + G    +++            ++  +   P G  +    D   
Sbjct: 201 LLAWRSLLADPVVGPQIAGRWDHVLVDEYQDVNATQVDIVHAL--RPGGHGLTVVGDDAQ 258

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               +                  T         +  L+      +RL +++N +   +  
Sbjct: 259 AIYGFRGSDHAHLRSLVQELPEVT---------VVRLERNFRSHQRLLDLANVVRPGAEG 309

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
             +  L  D  + R                    L+   +   EA  I  ++  +  + +
Sbjct: 310 EHRITLHSDRREGRPA-----------------RLVRCHDAPAEARIIVDSVLEAHQKGR 352

Query: 387 KKS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
           +    A++      +  +++ELT  G+      G+      H     + +  +    D +
Sbjct: 353 RLREQAVLMRAAAHSDLLEVELTARGVPFVKYGGLKFLEAAHVKDFVAAVRLLDNPRDEV 412

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
           A   L++          + L  +    EL A   ++++  +    ++    +A   +   
Sbjct: 413 AWYRLLRLHDGIGPARARSLLGSLADPELSA-DLDRHAEAVAAAPAMSRVALAASLSTLA 471

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
               ++R+ E  +    LL   +            +     G    S      V  L
Sbjct: 472 DARSRNRIGERARGCLELLRPLLTARYRDWSARLGDLERLVGAADQSPDLAAFVAEL 528


>gi|330812675|ref|YP_004357137.1| DNA helicase II [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327380783|gb|AEA72133.1| putative DNA helicase II [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 727

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 61/686 (8%), Positives = 157/686 (22%), Gaps = 147/686 (21%)

Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
           +L+ R      +++  P S LS+  +   A  +   +  ++  I          H L + 
Sbjct: 40  VLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRHRIEQLMG-INPAGMWVGTFHGLAHR 98

Query: 176 KYGMWWL---------------------LAADFLKIASKYWTERLVE------------- 201
                W                           L +  + W  R  +             
Sbjct: 99  LLRAHWQEAGLSQTFQILDSDDQQRLVKRVIRELGLDEQRWPARQAQWFINGQKDEGLRP 158

Query: 202 ---------------------------LNASSPVGYQIALMRAEAEHLMKG-----TKGP 229
                                                +  +    +H             
Sbjct: 159 QHIQASGDLFLATMRSIYEAYEAACQRAGVIDFSELLLRALDLWRDHPGLLAHYQKRFRH 218

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
           +++     +       +  +A   +  +V+   D       W     ++ +  S++   +
Sbjct: 219 VLVDEFQDTNAVQYAWLRLLAKGGDSLMVV--GDDDQSIYGWRGAKIENIHQYSADFPDA 276

Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                                         +       +      +     NT  L  ++
Sbjct: 277 E--------------------------VIRLEQNYRSTAGILKAANALIANNTGRLGKEL 310

Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELT 407
                    + L  A NE +EA  +   +  +L     +   A++      +R ++  L 
Sbjct: 311 WTDGGEGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNAQSRVLEEALL 370

Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
           R  I   I  G             + L  I    +  A+  ++  P              
Sbjct: 371 RERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVP-------------- 416

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
              +    +   ++      +               H       ++          +D I
Sbjct: 417 TRGIGEKTVEAIRDHARHCHVSMWEAM---------HQLVANKGMTGRAAGALKAFMDLI 467

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                       +  +           + +     +      +    +   EE  + +  
Sbjct: 468 EDLAAKCGEMPLHLMTQT-------VIEQSGLIAYHEAEKGEKGQARVENLEELVSAARN 520

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
           F    E       +A      +             E   ++ ++    ++ L F  + L 
Sbjct: 521 FESTEEDEDLTPLSA-----FLGHASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLV 575

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLREN 706
           G+ EG++P                ++L+   +   +    +         L+ T +    
Sbjct: 576 GMEEGLFP--------------HKMSLEEPGRLEEERRLAYVGITRAMQNLVLTYAETRR 621

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLK 732
              +     + R +          ++
Sbjct: 622 LYGSETYNKVSRFVREVPKGLIQEVR 647


>gi|283783598|ref|YP_003374352.1| UvrD/REP helicase [Gardnerella vaginalis 409-05]
 gi|283441008|gb|ADB13474.1| UvrD/REP helicase [Gardnerella vaginalis 409-05]
          Length = 1397

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 83/283 (29%), Gaps = 27/283 (9%)

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
             +L  +   Y +     +   +  + +                +S   +  ND  A   R
Sbjct: 1123 ADLMPKIDWYHNIQELKNRAEQLSNVENVNVTAVQRRAMFRNDYSRANEDFNDADAKRLR 1182

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK-------RINKNTPEINHLMKQIIDS 841
            +       P        +D GT FH    + +K                    + +  ++
Sbjct: 1183 KEWMAIIRPIPSVSSPASDLGTRFHAWAEQFVKAGCVNKNSIQYDVDETAVENVAETCEN 1242

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-IHLTG 900
              +         +IW+          +  +   +     I    P    +  +G   + G
Sbjct: 1243 ISQNAKSSERKLLIWKQRL-------ITSKWAHR---RPIAAEQPIVAHVPELGDQIING 1292

Query: 901  FADRID------LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
              D I          S    I D+KTG  P K     L   QL      L   +   +D 
Sbjct: 1293 KIDAIFAGGLNPEDPSKLYTIVDWKTGRKPTKPQDIALKLGQLDWYRLLLSLMTKVPLDA 1352

Query: 955  RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
               A L+Y+ +    + +   + ++K   + L+E     LI +
Sbjct: 1353 ID-ATLYYVNISD--ECEREIHAEQKTKDEILAELHSDTLISL 1392


>gi|254188291|ref|ZP_04894802.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254258164|ref|ZP_04949218.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           1710a]
 gi|157935970|gb|EDO91640.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254216853|gb|EET06237.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           1710a]
          Length = 1114

 Score = 68.4 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 78/881 (8%), Positives = 189/881 (21%), Gaps = 65/881 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKW-------EDLHAL--KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             +W       E + AL       G        +     +     L +        +   
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 214 LMRAEAEHLMKGT---KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
               + + + +        + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARVKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--- 387
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLAP 381

Query: 388 --------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                     A      +             I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                 +   ++             + A  A   +     +     +             
Sbjct: 442 DVGAPELVEWLR-------------ADAVAARYGIDATALETVQTWLAASGARRGLAPDA 488

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               +      R +  D    + L   +     P+ T+     +  G   +         
Sbjct: 489 AEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTD 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC------------------IKAN 601
            L        R L    + +      + F       +                     A 
Sbjct: 549 DLDGFARRIARDLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAG 608

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           A     ++   +      P         +        R L +  + L G+++GV P    
Sbjct: 609 AALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLAR 668

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            + F    + + L  +           D  +A   R LI        +   +    L   
Sbjct: 669 ADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDE 728

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
           L+                     R          +      P         S + + +L+
Sbjct: 729 LLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLL 788

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
            +     AR           ++     D    + +    L++ R+     +    +    
Sbjct: 789 AEGACAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVD-T 847

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
           +           +      L  + + +         +    
Sbjct: 848 EPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASP 888


>gi|257440773|ref|ZP_05616528.1| ATP-dependent DNA helicase PcrA [Faecalibacterium prausnitzii
           A2-165]
 gi|257196747|gb|EEU95031.1| ATP-dependent DNA helicase PcrA [Faecalibacterium prausnitzii
           A2-165]
          Length = 598

 Score = 68.4 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 55/501 (10%), Positives = 128/501 (25%), Gaps = 84/501 (16%)

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
           A  RL+S +        V+   D       +   T ++                      
Sbjct: 2   AQFRLVSLLTGPEKNICVV--GDDDQSIYRFRGATIENILNFERIFP------------- 46

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
                        G  +  +       S      +     NT+     +         V 
Sbjct: 47  -------------GTKTIRLEQNYRSTSNILNAANCVIQHNTERKGKTLWTRNDEGDKVQ 93

Query: 361 LIEADNEREEAISIAIALRMSLDENKKKS--ALITADRNLARRVKLELTRFGINIDISAG 418
           +  A+NE++EA+ IA  +   L E    +  A++      +  ++   TR GI   I  G
Sbjct: 94  VYTAENEQDEAMHIADVIGEHLKEGGHLADHAVLYRMNAQSAPIESYFTRAGIPHKIVGG 153

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
              +       + S ++ +    D + +  ++  P                         
Sbjct: 154 QRFNDRKEVKDIHSYMSIVANARDDVRLRRIINEP------------------------A 189

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
            K     +D+ + +  +                         +       +    L T  
Sbjct: 190 RKIGNTTVDVIADLAAQQGISMLEVISHADAYAKLSRAIMPLLKFWQIYEKLQESLETRT 249

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
            ++ +        D  ++T                     +    L +      +     
Sbjct: 250 LDEFAQ-------DVIEVTGYKAMLEADAAKGHEDAADRLQNLGQLVNNVKNYCDQ-HGE 301

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
            A+   +   +  +     +    E +  + ++    ++ L F  + L G+ EGV+P   
Sbjct: 302 DASLEGY---LEDIALISDIDSYNESADQVVLMTIHSAKGLEFPYVFLIGMEEGVFPSEM 358

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE----NNIPTIAS 713
           +K               +      +    +      +  L  + S+             S
Sbjct: 359 SKY--------------SEADLEEERRLAYVGITRAKKELYISNSVSRMLYGRTQRNEPS 404

Query: 714 RWLQRLLVLGGTDFFDNLKKR 734
           R+L+ +      +      +R
Sbjct: 405 RFLREIEPEYIEETRSPALER 425


>gi|46448281|gb|AAS94936.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio vulgaris
            str. Hildenborough]
          Length = 1070

 Score = 68.4 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 67/594 (11%), Positives = 141/594 (23%), Gaps = 121/594 (20%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +   R ++   +   + E              +     T+RA  E+        G  +
Sbjct: 507  PGTGKTRTLV-GRVQRLVAEGVAAR--------RIVAVTFTRRAATEMDERLSVTLGDGA 557

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
              LP   +L  +  E +           PPV   +   E AR +    N           
Sbjct: 558  -PLPRTDTLHALAFEFWHRSSA-----QPPVLLSE---EAARRVFAEANPDATAQTLREA 608

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
               L++         LA  LA ++D    ++  W                          
Sbjct: 609  WDELAVCRERMQVCSLA--LAPLLDRYVQQKAAWN-----------------LADYTDLL 649

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            ++W                   +      L       +++       P    L+  +   
Sbjct: 650  EFW-------------------LEQIHNGLYVPPWRHVLVDEIQDLSPLQLALVRALL-P 689

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
            P G       D       +                                D+K    + 
Sbjct: 690  PGGEGFFGIGDPDQSIYGFRGA---------------------------HGDVKGALDEA 722

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
               +S  +  R+   S + +      +        ++  ++   +D+ L EA +   EA 
Sbjct: 723  WPGLS-VVTLRANYRSSASVLDAAGALMEGRSACGRLRAVRDLPADIRLFEAPSAESEAA 781

Query: 373  SIAIALRMSLDENKK--------------------KSALITADRNLARRVKLELTRFGIN 412
             I   +R  +                           A++   R L   ++  L+R G+ 
Sbjct: 782  WIGDRIRSLIGSTAHTLVDAAPEGALPGEGTFGPGDIAVLVRVRALIPVLQRTLSRLGVP 841

Query: 413  I--------DISAGIPLSTTLHSSILTSLLNAIFKLNDFM--AIATLVKHPLA----KFG 458
            +             + L        +           D +      L + PL        
Sbjct: 842  VAAPETEAFWADQRVSLILAAAGRFVGIGSAVAGGPGDEVNCPDKMLARGPLGVAAYLRE 901

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSL--VLDRIATQKNNTHVPHWQSRLSEED 516
             P       ++A      +        + L +   +   + T +  +      S  + + 
Sbjct: 902  SPPFDELFWQSAAFKALSKAYDTHGGWVGLINWVNLQSELETVRRRSEKVQVMSLHAAKG 961

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
             E   + +  +   I P     T           +D  +        +      
Sbjct: 962  LEFRAVFLPALEDGILPFAGAATLSGHADREHMRTDLEEERRLFYVGITRAAEG 1015


>gi|258406127|ref|YP_003198869.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
 gi|257798354|gb|ACV69291.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
          Length = 714

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 64/670 (9%), Positives = 167/670 (24%), Gaps = 75/670 (11%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V        N +   S+ +   T++A  E+ +        +        +       
Sbjct: 37  RTVVYRLARLVENSVPPESILLLTFTRKAANEMLTR-AAHLAGQGLHGVAGGTFHAFAFG 95

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                       +  VS + R                D    +     +        +  
Sbjct: 96  MLRRFGQR-LGYDQGVSIMDR---------------SDAEGVVKQVREMEGVGKGDRSFP 139

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
               +  ++     +E+  ED+ A +           A+ ++I  + +     +      
Sbjct: 140 RKGAVLSLMSKARNKERDLEDILASEAGHLLPH----AEGIQIIQRGYEAFKAKHGLLDY 195

Query: 208 VGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                       EH             ++I     +     RL+  ++     A V+   
Sbjct: 196 DDLLFKFETLLREHEDIRDFLVQRYSHLMIDEFQDTNLVQGRLVRLLSGPE--ANVMAVG 253

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       +   T  +    +S+                    K   +++    +  +  
Sbjct: 254 DDAQSVYAFRGATVNNILQFTSDFP----------------GTKVIKLEQNYRSTQPILE 297

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            +  I           + +  I   K            ++   ++  +A  +   +    
Sbjct: 298 LTNQILGQATAKYEKHLFSERIEGPKP----------QVVRPLSDMTQAQGVVDKIVELS 347

Query: 383 DENK-KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                   A++      +  +++ L + GI      G+  + + H     + L  +    
Sbjct: 348 RTTPLHDIAVLFRAGYQSYPLEVALNKLGIGYQKFGGMRFAESAHIKDFVAHLRLVANPA 407

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
           D  A    +   L     P+      +  L        +    + +L++ +      + +
Sbjct: 408 DLPAWQRALS--LLPGIGPKTCERIYEATLHGDEAYMRRTCKRVPELENTLTLLDNLRNS 465

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
              V             +   L+D+    +              G   ++          
Sbjct: 466 RLGV-----------APVIEQLLDYYRPHMEE-RYPDDYPKRQAGLEELAQIAAGYTKLE 513

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
             +                G     +    I +   ++ +A+  ID++           +
Sbjct: 514 DFLADMSLDNPDP--GSGHGVEEDKVVLSTIHSAKGLEWSAVLLIDLVEDRFPSRHALSR 571

Query: 622 IEK-SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
            +       ++    +R  +F  L +          +T     L      +L   T E++
Sbjct: 572 PDDMEEERRLMYVACTRARDFLGLYVPDTVYKRNQGSTP---VLPSPFVQELPSSTYEEW 628

Query: 681 IGQAAHDFEM 690
               A  F  
Sbjct: 629 REGYAGGFRR 638


>gi|329955053|ref|ZP_08296034.1| UvrD/REP helicase [Bacteroides clarus YIT 12056]
 gi|328526343|gb|EGF53358.1| UvrD/REP helicase [Bacteroides clarus YIT 12056]
          Length = 1128

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 95/922 (10%), Positives = 237/922 (25%), Gaps = 133/922 (14%)

Query: 83   DVVEEKFTADLLLSYNL---NPPVSNIQRLLELARLILI-WRNKLPDIIKDLYPESPLSL 138
            D  E +      +  +L      + +  R L   RL      N                 
Sbjct: 235  DQFEGELDGHAFVPEDLKGGARGIGSYFRKLRDGRLTDKDVLNATLQNSLADAKNWTTKT 294

Query: 139  PISPANAIWLAK-NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                   I LA+ +L  ++     E  + +    + + +  +  L     L    +    
Sbjct: 295  SSRKDEIIRLAETSLIPLLQDA--ERLRPQKSRTINSCRLSLQHLNKLQLLNHIDEEVRT 352

Query: 198  RLVELNASSPVGYQIALMRAEAEHLMKGTK-------GPIIIAGSTGSIPATARLMSTV- 249
               E N          L +   E                ++I     +          + 
Sbjct: 353  LNREHNRFLLSDTNALLHKLVHEGDSSFVFEKIGANIRNVMIDEFQDTSRMQWDNFRLLL 412

Query: 250  -ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS------THPQYSLAKLLDF 302
                  GA  L   D       W        N   S+ +        +   +     ++ 
Sbjct: 413  LEGLSQGADSLIVGDVKQSIYRWRNGDWGILNSLGSSQSQPQLYNNSSQLSFPFPVRVET 472

Query: 303  LDIKRE----DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
            L + R      +     +          +    L  +   ++       +          
Sbjct: 473  LKVNRRSETNVINFNNRLFTAAVDYLNSLHLEELKEECFPLKRAYADVAQESPKTDSKGY 532

Query: 359  VALIEADNEREEAISIAIALRMSLDENKK---------KSALITADRNLARRVKLELTRF 409
            V  +      EE       L    +E ++            ++         +     + 
Sbjct: 533  VK-VSFIEPDEERNYTEKTLSALGEEVQRLLSEGVKLNDITILVRKNKNIPPIADYFDKE 591

Query: 410  -GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
              + +       L  +L   +L   L  +    + +A A+L+ +        EK +   K
Sbjct: 592  LHLPVVSDEAFRLDASLAICMLIDALRYLSNPEEKIAKASLIMN-YKLQITDEKQVKADK 650

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                   LR N N     + K                       +    +    L    +
Sbjct: 651  AGANENKLRENGNIAGANEDKREANFA-----------EPADWHNILTADARTALPAEFV 699

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
              +  L             + + +  +   T            + ++  ++    L S F
Sbjct: 700  SRMNELR-----------LMPLYELLEELFTLFN---------MGSIEKQDAY--LFSFF 737

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
              + E      ++   +I      +  +T+     +   + I    +S+ L F T+++  
Sbjct: 738  DAVTEYLQSNSSDLDGFIRYWDETLCAKTI--PSGEMDGIRIFSIHKSKGLEFHTVLIPF 795

Query: 649  LNEGVWPKNTAKNPFLSRVM----------------------QSDLNLKTAEKYIGQAAH 686
             +  +  +   +  + +                         + D   +  + ++     
Sbjct: 796  CDWKLENETYNQLVWCTAPESPYNAIDLVPVNYSSTMAESVYRQDYLDERLQLWVDNLNL 855

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIA--SRWLQRLLVLGGTDF--FDNLKKRGQCYLDWT 742
             +         +   S ++         S  L ++   G   +   +++ + G+ Y    
Sbjct: 856  LYVAFTRAGKNLILWSKKDQKGTMAELLSAALPQVAQTGEGSWNEEESVYESGEIYPSGE 915

Query: 743  RKL-----------DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
              L           D    +          P++      S     +      +  A  I 
Sbjct: 916  EILHCVQNEKNKDTDKPNDKSKVLNKLAQKPVKLPVHMESMRHDIEFRQSNRS--ADFIA 973

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
             +D     ++  +   RG L H + + +  +    +  +    +  + +    +      
Sbjct: 974  GVDEAESSRRFIN---RGRLLHTLFSAIETEV---DIDDAISRL--VFEGIIGRTETEEE 1025

Query: 852  IDIIWRHLFHK-ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
            I  + R  F +     +     ++ +  + I+          +  +      DR+ +++ 
Sbjct: 1026 IRELTRKAFSQPQIKDWYSGAWQLFNECDIIWQE--------NGELRNR-RPDRV-MMRD 1075

Query: 911  GFVDITDYKTGDNPKK--ETAQ 930
            G + + D+K G   KK  +  Q
Sbjct: 1076 GVIVVVDFKFGKPNKKYNKQVQ 1097


>gi|237740556|ref|ZP_04571037.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229422573|gb|EEO37620.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 872

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 103/330 (31%), Gaps = 33/330 (10%)

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
            L   +    PK  A N   +   +  L LKT E  I    + F         I   SL 
Sbjct: 493 ALVYADSQSLPKIKANNNLFTEQQKIKLALKTNEDEILIQKYRFFQNILNLDKITVYSLV 552

Query: 705 ENNIPTIASRWLQRLLV-LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
             +I    S ++  L+      +   N  K          K +   K P + R       
Sbjct: 553 NQDINIDFSPFVYELVNKYSAKEHNTNDLKGFFEACYLQNKTEDFKKDPVFFRAFSKKNT 612

Query: 764 EAQPRTYSFSEIK--QLINDPYAVYARRILKLDFIPHFKK--DPDRTDRGTLFHNIITEL 819
           +    T +        L  +    +  +I  ++ I              G + H  + ++
Sbjct: 613 DFINNTLTIGAYDYILLKKNETFFFLDKICGIESISETSPVNGMSPKVLGNILHKTLEDI 672

Query: 820 IKKRINKNTPEINHLMK--QIIDSHFEKENLPP----------HIDIIWRHLFHKISHSF 867
            K        +  +L+   + I  + E+               ++D +          +F
Sbjct: 673 FKTNWKNILKDSTNLILSKEEIKEYLERHIWKEKLKIENFMELYLDEVLFPRLINNIENF 732

Query: 868 LE--HEEKIQSSIEKIFVNIPAK------MAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
           L+  +EE   S I++I     +       +  + I + L G AD +         I D+K
Sbjct: 733 LKVLYEELKDSKIQRIEAEKESTTKNVAYLEHKGIQVILNGRADLLIET-DKARYIIDFK 791

Query: 920 TGDNPKKETAQ------KLIDPQLSLEAAA 943
           TG    K+  +         D  L + +AA
Sbjct: 792 TGSY-NKDQLEFYSIMFYGSDNSLPVYSAA 820


>gi|126452106|ref|YP_001065662.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           1106a]
 gi|126225748|gb|ABN89288.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           1106a]
          Length = 1197

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 84/881 (9%), Positives = 191/881 (21%), Gaps = 65/881 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 113 PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 165

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 166 HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 225

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W          + +          A D     +  W   L EL+ S        L  
Sbjct: 226 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 285

Query: 217 AEA------EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
           A A                + +       P    L+  ++   +  I            I
Sbjct: 286 ARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 345

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 346 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 404

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----K 386
                       D+              V +    +   +   +   L    D +     
Sbjct: 405 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPCLAP 464

Query: 387 KKSALITADRNLARRVK-------LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               +   D   A  +               I   I+   P      + +L   L    +
Sbjct: 465 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 524

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                 +   ++             + A  A   +     +     +             
Sbjct: 525 DVGAPELVEWLR-------------ADAVAARYGIDATALETVQTWLAASGARRGLAPDA 571

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               +      R +  D    + L   +     P+ T+     +  G   +         
Sbjct: 572 AEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTD 631

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC------------------IKAN 601
            L        R L    + +      + F       +                     A 
Sbjct: 632 DLDGFARRIARDLTPQGWGDVFADALARFFDSGPAVADALSGVRDALDAMLAAMAEGAAG 691

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           A     ++   +      P         +        R L +  + L G+++GV P    
Sbjct: 692 AALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLAR 751

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            + F    + + L  +           D  +A   R LI        +   +    L   
Sbjct: 752 ADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDE 811

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
           L+                     R          +      P         S + + +L+
Sbjct: 812 LLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLL 871

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
            +     AR           ++     D    + +    L++ R+     +    +    
Sbjct: 872 AEGARAQARPFFAAPLPAEPEQPVAFADFERFWRHPARSLLRARLGIVLLDAQAELVD-T 930

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
           +           +      L  + + +         +    
Sbjct: 931 EPFELDYAGSDALAERVLPLLIETADAAAFEHALRVADASP 971


>gi|84501742|ref|ZP_00999914.1| Putative uvrD/DNA Helicase II [Oceanicola batsensis HTCC2597]
 gi|84390363|gb|EAQ02922.1| Putative uvrD/DNA Helicase II [Oceanicola batsensis HTCC2597]
          Length = 862

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 87/765 (11%), Positives = 187/765 (24%), Gaps = 121/765 (15%)

Query: 16  PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75
           P  RE + AL    L+           L A +   + T RA              K+   
Sbjct: 33  PAQREAVEALDGPVLMLAGAGTGKTKALTARIVHLLSTARAAP--NEILAVTFTNKAAKE 90

Query: 76  PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
              + +G ++ E       L       V  ++R  EL  L   +     D    L  +  
Sbjct: 91  MKAR-VGRMLGEHVEGMPWLGTFHAICVKLLRRHAELVGLKSSFTILDTDDQIRLMKQ-- 147

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
           L    +     W A+ LA IID  +      +++ + ++  +                 +
Sbjct: 148 LIRANNIDEKRWPARQLAGIIDNWKNRAWTPQNVPSAESAAFNNR-------GTELYDQY 200

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTK-----GPIIIAGSTGSIPATARLMSTVA 250
             RL+ELNA       + ++    +H     +       I++     +  A    +  +A
Sbjct: 201 QRRLLELNAVDFGDLLLHVVTIFQKHEDVLAQYQRWFRYILVDEYQDTNVAQYLWLRLLA 260

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
                   +   D       W      +      +      P   + +L          +
Sbjct: 261 GGHRNICCV--GDDDQSIYGWRGAEVGNILRFEKDF-----PGAKVVRLEQNYRSTEHIL 313

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
              G V     GR                     L  ++         V LI   +  EE
Sbjct: 314 AAAGGVIRGNEGR---------------------LGKELWTEAGEGWKVRLIGHWDGEEE 352

Query: 371 AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI- 429
           A  I   +        +++      +N          +       S   P+    +    
Sbjct: 353 ARWIGEKIEDHQSGRSEEA------KNRYNPRLNSFQQELDRRAKSGLGPVDEHQYVRDA 406

Query: 430 --------------------------------LTSLLNAIFKLNDFMAIATLVKHPLAKF 457
                                           L +L + +        IA LV+   A  
Sbjct: 407 FESGSVYSDMKTFNLVKQLLDRDKYSARYGNMLGALGDYVVHRFSLDEIAILVR---ASH 463

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI-ATQKNNTHVPHWQSRLSEED 516
                        L    + G +    +    ++   R+  +  ++       +      
Sbjct: 464 QMRAFEDRFLTIGLPYRVIGGPRFYERLEIRDAMAYFRLVVSPADDLAFERIVNTPKRGL 523

Query: 517 KELAVLLVDHILQ------CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            + A   +    +           +          G   +           +     +  
Sbjct: 524 GDKAQQKIQVCARDNGVPLVEGARILLAEGGIGGKGAGELRALIDNLDRWGRMTGHADLS 583

Query: 571 KLPNLWF--EEEGKTLSSLFSKIIETGSCIKANAIEWIDI--------ITRLIDGETVKP 620
            +       +E G T      K  E    ++        +            +       
Sbjct: 584 HVELAEQVLDESGYTAMWQNDKTPEAPGRLENLKELVKALENFDNLQGFLEHVSLIMDNA 643

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
             ++ + + I+    ++ L F  + L G  +G++P   + +                +  
Sbjct: 644 SEDQGAKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMDE------------SGPKGL 691

Query: 681 IGQAAHDFEMANGTRHL-IYTRSLRENN----IPTIASRWLQRLL 720
             +    +        +   + +            I SR++  L 
Sbjct: 692 EEERRLAYVGITRAEEVCTISFAGNRRVFGQWQSQIPSRFIDELP 736


>gi|56964348|ref|YP_176079.1| ATP-dependent exoDNAse beta subunit [Bacillus clausii KSM-K16]
 gi|56910591|dbj|BAD65118.1| ATP-dependent exoDNAse beta subunit [Bacillus clausii KSM-K16]
          Length = 863

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 60/581 (10%), Positives = 149/581 (25%), Gaps = 59/581 (10%)

Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
           L   F K  +    +RLV   +         L   +     +     I++     +    
Sbjct: 323 LLQAFAKRYADLKAQRLVADFSDLQQKAYTLLQLPKVAAACQSAYTHIMVDEFQDTNQVQ 382

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-----HPQ--YS 295
            +++  +    N A +    D       +        N  +            H Q  Y 
Sbjct: 383 LQIVQAI----NPAHLFFVGDEKQSIYRFRGADVAIMNEMAKKAAEINEGELIHLQENYR 438

Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK-SFLPPDTSDMRNTDILENKIPNIQK 354
            A  +  L  +           + +   +  +   +   P T+        + +  N  +
Sbjct: 439 TAPQIVELVNELFAHVMAPGGEDALPYATSYVPLKAGRKPHTNKQALAAFHQLEKSNEAR 498

Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
            F+ +      +   E       +R +        A++   R     ++      GI   
Sbjct: 499 SFASLLQQTIADGMIEVEG-EGKVRQA---QWNDVAVLLPSRTNLPELEQAFAEAGIPYR 554

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
           +  G+            ++LN + +  +   +  L++ PL      +             
Sbjct: 555 VHGGVGFFEKQEVIDFLNVLNWLRRPFEDAYVVALLRSPLFGLTLSDL------------ 602

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                     + D K    +             + +             +    + I   
Sbjct: 603 --------LTVNDCKEEHENLAVFLAKEEAPSLFANH------PRLQQALKQYGEWIDLF 648

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
           + +    +   G L + + T L    L +    +         +   +  ++    +   
Sbjct: 649 LPFAFTGSVKEGLLQLFELTGLRYAVLSDTNGIQRVGNVEKLIDLFAQLNTTNLETLCLQ 708

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
            +   A +    +     ++GE           + I+    S+ L F  + L  +++   
Sbjct: 709 MNRYIAASKNVPEAEVEQLEGE----------AVTIMTVHASKGLEFPVVCLPYMDQKRR 758

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAE------KYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
           P   A        +   L L   +       +  Q     +     + L Y    R  + 
Sbjct: 759 PDTDAVYFDQEWDIVFQLKLDDRDPISTPAYFQAQEKRGKQALEEAKRLFYVALTRAKDY 818

Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
             +A+  L               ++     ++W   +    
Sbjct: 819 CLLAAADLSERRSWA-EMVEAANEQSPLSAINWVESVKSGE 858


>gi|55980967|ref|YP_144264.1| ATP-dependent DNA helicase [Thermus thermophilus HB8]
 gi|55772380|dbj|BAD70821.1| ATP-dependent DNA helicase [Thermus thermophilus HB8]
          Length = 857

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 102/949 (10%), Positives = 220/949 (23%), Gaps = 132/949 (13%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE----FIEITGKKSTILPIIKSLGD 83
            TLVE         + L  +     T++A +ELR+        +  ++  +   ++ +  
Sbjct: 14  HTLVEELLALVKGGVPLRRIAAVTFTRKAAEELRARARKGVEALAREEPGLGGAVREVHG 73

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            V       +  +     P  ++     +   +L     L +    LY         +  
Sbjct: 74  AVFGTIHGFMAEALRHAAPFLSLDPDFAVVDELLAEALFLEEARSLLYLLGEDPGLEAFL 133

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
             ++  + LA+    +E      E L  L  E    +   A + L               
Sbjct: 134 RRLYQGRTLAEAFRPLEGA----EGLVRLFAEALARYRRRAQEVLGP------------- 176

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                     L   +A   +      +++     + P   R    +     GA V+   D
Sbjct: 177 GDLEALALRLLRHPQALARVVERFPHVLVDEYQDTSPLQGRFFRALEEA--GARVVAVGD 234

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                 ++     +                  +  L +     R     L          
Sbjct: 235 PKQSIYLFRNARLEVFREALGRAEE-------VLVLDETRRHARRVAAFLNRFVALFPEG 287

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
             V  +     +     +       +   ++  +D+        + E             
Sbjct: 288 ERVAVRPTREAEGRVEVHWVEGGAGLEERRRFEADLLARRLLALKAEG------------ 335

Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF----- 438
               + A++   R     ++      G+   +  G      L    L   L         
Sbjct: 336 YAFGEMAVLVRSRASLPLLERAFRARGVPYVLRRGQSFFNRLEVRDLYHALRLALLEGPP 395

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
              +  ++   ++ P       E   +  +        +  ++    +   +      A 
Sbjct: 396 GPEERRSLLAFLRSPFVGLNLGEVEEALLREDPLPYLPQAVRDRVAWLRGLAGKRPLEAL 455

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
           +                   L  LL+   L+    L            +   S+  +   
Sbjct: 456 KALVRDEVFLSRLSPRARANLDALLLLAGLERFPDLEALLEWLRLRALDPEASELPEG-- 513

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                                             E    +  +A + ++     +     
Sbjct: 514 ---------------------------------GEGVGLLTVHAAKGLEWPVVAVYDVAR 540

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                 S  L               + + G                    +         
Sbjct: 541 GEPGPASPVLVGPEGE---------VAVAGTRAH----------------RDLAQRLAQA 575

Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
           +        +   +  R ++     R       A    +  L     D         Q +
Sbjct: 576 QREEAVRLLYVALSRARDVLLVTGSRSGRESPWAQALERLGLGPESQDPLVARHPVPQGW 635

Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                      + P     +   P    P  +S S   +    P A         + +  
Sbjct: 636 RPPRPAPAARREGPPAPYAEHLLPPRPLPLVHSPSAHLKAEPKPLA---------EALEG 686

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
                     GTL H  +   +     +    + H       +  EKE L   +  + R 
Sbjct: 687 EAVSGFARALGTLVHYALARDLDPEDGRAMRALLHQEVAFPFAEGEKERLLAEVRALLR- 745

Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
            +  +    L   E+               + +   G    G  DR+  +      + DY
Sbjct: 746 RYRGMLGRELPALEERAEDYR------ELPLVLPLKGTVWHGVLDRVYRVGD-RWYLDDY 798

Query: 919 KTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
           KT     +E   +    QL+L     +         R  A L Y+R  +
Sbjct: 799 KT----DREVRPEAYRLQLALY----RRALLEAWGVRAEARLVYLRAGR 839


>gi|330961415|gb|EGH61675.1| DNA-dependent helicase II [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 727

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 62/708 (8%), Positives = 163/708 (23%), Gaps = 163/708 (23%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           ++ R L LA        +L+ R      ++   P S LS+  +   A  +   +  ++  
Sbjct: 23  SLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  ISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRLVKRVMRELGLDEQRWPA 141

Query: 198 RLVE---LNASSPVGY----------------------------------QIALMRAEAE 220
           R  +                                                 L+RA   
Sbjct: 142 RQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEAACQRAGVIDFSELLLRALDL 201

Query: 221 HLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            +++     +       +  +A   +  +V+   D       W 
Sbjct: 202 WRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++ +  SS+   +                              +       +    
Sbjct: 260 GAKIENIHQYSSDFPDTE--------------------------VIRLEQNYRSTASILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +   + N+  L  ++         + L  A NE +EA  +   +  +L    ++   A
Sbjct: 294 AANALIVNNSGRLGKELWTDVGDGELINLYAAFNEYDEARYVVETIESALKTGISRNDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + +  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                               +  ++        +      +     
Sbjct: 414 NVP-----------------------ARGIGEKTVEAIREHARHADVSMWEAMRLLVANK 450

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            L+          ++ I      ++                    L +     +      
Sbjct: 451 GLTGRAATALGGFIELIENLSAKVMEMP-----------------LHLMTQTVIEQSGLI 493

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKAN-----AIEWIDIITRLIDGETVKPKIEKS 625
                   E+G+       +++      + +            +             E  
Sbjct: 494 TYHEQEKGEKGQARVENLEELVSAARAFENHESDEELTPLAAFLGHASLEAGDTQAQEHE 553

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            ++ ++    ++ L F  + L G+ EG++P                ++L+   +   +  
Sbjct: 554 ESIQLMTLHSAKGLEFPHVFLVGMEEGLFP--------------HKMSLEEPGRLEEERR 599

Query: 686 HDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             +       + L+ T +       +     + R +          ++
Sbjct: 600 LAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPTLIQEVR 647


>gi|37521963|ref|NP_925340.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
 gi|35212962|dbj|BAC90335.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
          Length = 793

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 85/705 (12%), Positives = 200/705 (28%), Gaps = 85/705 (12%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV-VEEKFTADLLLSYNLNPPVS 104
            +     T +A  E++   +++  +++      ++   +   E+      +   L  P+ 
Sbjct: 55  HILAVTFTNKAAGEMKERILQLFCERTARSRGGEAFAALPDPERRAIAGRVRRELIQPLW 114

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPE---------------SPLSLPISPANAIWLA 149
                   AR++    +K  D     +                   ++  ++  +  ++ 
Sbjct: 115 VGTFHALCARMLRYDIDKYTDQRGRTWQRNFTIFDESDVQDQIKDIVTKQLNLDDRRYVP 174

Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
           +++   I   + +    E        ++     L A  +    + + ++L   NA     
Sbjct: 175 RSVRFAISGAKNQGLSPE------EYQHSEGGSLRARTIAQVYERYQDQLARNNALDFDD 228

Query: 210 YQI---ALMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                  L+R   + L         I++     +      L+  +A              
Sbjct: 229 LIWVPVQLLRRRPDVLDYWHRRFRHILVDEYQDTNRTQYDLIRLLA------------TN 276

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD-FLDIKREDVKRLGNVSNEMYGR 323
           + P + W+        +  ++    +  Q     L+D   D              ++   
Sbjct: 277 NQPKSEWDWRDRSVFVVGDADQAIYSFRQADFRILMDFQSDFGDGLADDETETLIKLEEN 336

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
               +      +     N + ++  +   +     V+L EA++E  EA  I   LR   D
Sbjct: 337 YRSSATILDVANELIANNIERIDKVLRATRPAGLPVSLHEAEDEVAEAEYIVGQLRKLKD 396

Query: 384 ENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
            + +     A++      ++ ++  L+R+G+   +  G+          + S L AI   
Sbjct: 397 ADTRPWNDFAVLYRVNAQSQPIEQALSRWGVPYTVVGGLRFYDRREIKDVLSYLKAIHNP 456

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
            D +A+   +  P    G        A                                 
Sbjct: 457 ADSVALKRSMSAPRRGIGKTTLDKLEAGA------------------------------- 485

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
               +          D+     L       I   V +          + +S+     +  
Sbjct: 486 ---GMLQTSLWQLLTDETSIKNLAGRTSGPILQFVRFVERLQELAARVRVSELLDTVLKE 542

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
              V + +           E         +  E  S    NA     +    +  + +  
Sbjct: 543 SGYVQMLQEEGTEEAEGRLENVLELRSVVQRFEEESEDPENATLEAFLANVSLASD-LDN 601

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
               +  + ++    ++ L F  + LGGL +G++P   A     S  ++ +  L      
Sbjct: 602 LEAGAERISLMTLHAAKGLEFPVVFLGGLEDGLFPHFRAIQDGDSAAIEEERRLCYVGIT 661

Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             +       A   R       L  +  P I S++L+ L      
Sbjct: 662 RAKERLFLSYAQARR-------LYGDRQPAIPSQFLKELPAEKLA 699


>gi|261365067|ref|ZP_05977950.1| exodeoxyribonuclease V, beta subunit [Neisseria mucosa ATCC 25996]
 gi|288566486|gb|EFC88046.1| exodeoxyribonuclease V, beta subunit [Neisseria mucosa ATCC 25996]
          Length = 1213

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 97/849 (11%), Positives = 216/849 (25%), Gaps = 113/849 (13%)

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
            L   +A +      +L +A A++         +I     + P    +   +        +
Sbjct: 376  LDVYDALTDNPQADSLAQAVAQNWRIA-----LIDEFQDTDPLQYEIFRKIF-ISQHKPL 429

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-----DIKREDVKRL 313
                D       +         + ++     ++   +  +    L      + R   +  
Sbjct: 430  FLVGDPKQAIYSFRGADIY-AYLQAAADAQHSYTLATNYRSHAKLINGIGALFRCKNRPF 488

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
                 +        S+S L P  + ++   +       + K      ++        A  
Sbjct: 489  VLDGIDYTEVGAARSESRLSPPRTAIQIRWLNGKDNEVLNK-----DILRRRASEYCADE 543

Query: 374  IAIALRMSLDENKK---------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            IA  L  + +   K           A++    N    V   L   GI   + +   + TT
Sbjct: 544  IAHTLNEAAEGRLKFKDRPVVSGDIAVLVRTFNEGVMVAKSLKARGIQSVLLSRESVFTT 603

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
              +  L +LL+         ++  ++   L  +     Y             R      +
Sbjct: 604  PEALALAALLDYWLNPGQIGSLRFVLSGTLFGYDAQALYQL----------NRNEAELLN 653

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
             ++  +  +           + ++ S    E   LA      +      L      +  +
Sbjct: 654  WINTAAESVSIWRKSGIYAALQYFSSLHGIETGLLARGDERGLTNFHQLLECLSEEEGQS 713

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                ++  W    ++  Q+  + E      L   E  + L  + +     G         
Sbjct: 714  LSPAALHQWLNDQISLAQDRSVGESG----LLRLESDEALVKIVTMHASKGLQYPLVYCP 769

Query: 605  WID-----------IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
            ++            I+        +  K + +    I    E        L +       
Sbjct: 770  FVWDAKDMKPADWQILHTAAHTTELLAKSQLNDEDRIHLADEEMAERLRLLYVALTRAEE 829

Query: 654  WPKNTAKNPFLSRVMQSDLNLK-TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
                 A +   +        L+ +A+         ++        +         +  + 
Sbjct: 830  QLVLYAAHCGDTADSPFAYLLEGSADSNRADTRQAYDQERKANKAL-------GELQMLK 882

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
            + WL+ L        F   +   Q      R L     Q      + F  +     T   
Sbjct: 883  NNWLRFLKNPPEHTDFSFSEDAPQPAAAQNRHLSDDLYQAAVIPARGFQFIRHTSFTGLS 942

Query: 773  SEIKQ---------LINDPYAVYARRILKLDFIPHFKKDPDRTDR---------GTLFHN 814
             ++K             DP    A      +       D   TD          G   H 
Sbjct: 943  RQVKTRDDEREELQPALDPAETAADTERSSENTLPVSDDLPNTDIHHFPRGANAGVCLHE 1002

Query: 815  IITELIKKRINK------------------NTPEINHLMKQIIDSHFEKENLP--PHIDI 854
            ++ +    +  +                   T  +  +++    +    ++L   P    
Sbjct: 1003 MLEKFDFAQSAESQSSLIAETLTRYGFDLLWTDAVKQMLETCRKTRLAAQSLSEIPPERR 1062

Query: 855  IWRHLFHKISHSFLEHEEKIQ-----SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909
            +    F   +  F  H+ +       SS+    +    ++  + +   L GF D +    
Sbjct: 1063 LPEMGFTLYTEDFKLHDLRRWFARENSSLPPECIEAAERLDFQDVQGFLNGFIDMVCQDS 1122

Query: 910  SGFVDITDYK-----------TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
               V I DYK           T        A      Q  + A A+      +       
Sbjct: 1123 DDLVCIIDYKSNHLGDNAEAYTQQAMNAAVADHHYYLQALIYAIAVARYFKLRGKPLPKI 1182

Query: 959  NLFYIRLKQ 967
             + Y+ L+ 
Sbjct: 1183 AIRYLFLRG 1191


>gi|218289482|ref|ZP_03493710.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240350|gb|EED07532.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
          Length = 706

 Score = 68.0 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 53/487 (10%), Positives = 123/487 (25%), Gaps = 76/487 (15%)

Query: 51  VPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-LNPPVSNIQRL 109
             T++A QE+    +   G++   +  I ++  V     T +L   +  L+ P   I+R+
Sbjct: 174 TFTRKAAQEMTDRLLAAVGERGKGV-TIGTIHSVAYLMVTPELGEDWRVLSDPTWMIERV 232

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
           LE                     E     P      + L +                   
Sbjct: 233 LE---------------------EPSGKNPHGVGPVMKLGE---------AISAIAKAKA 262

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG------YQIALMRAEAEHLM 223
            AL   +           L      +     E                     A  +   
Sbjct: 263 DALGPHQVSEP-------LAKVYAAYETLKAERKTLDFEDMILHAIRLFRADEAFTKRW- 314

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
           +     +++     +  A    +  +    N   V+   D       +            
Sbjct: 315 RQRWRYVMVDEFQDTNTAQWLFLLELVKAHNNLFVV--GDDWQSIYYFRGARPDLMKEFL 372

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                +               +  E   R  ++  ++  R + ++     P         
Sbjct: 373 RRFPDAK-------------RVTLETNYRSHDLIVDVGRRIIRLNDGHQLPKRVVAHRPM 419

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLAR 400
                            ++   ++ EEA  +A  L+    E+       A++      +R
Sbjct: 420 PEGAIA----------QIVTVRSDLEEARFVAQELQRLRKEHGVSWSDCAVLYRTNIQSR 469

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
             +  L    I   +        +    I+   L      +D      L+  P       
Sbjct: 470 LFEEALADAEIPYHVVGDKHFYESPDVKIILDYLRTTQDTSDPTVWGHLLNRPKRYIPID 529

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
             +    ++    V +   K    +  + +L      ++     V +    + ++D++  
Sbjct: 530 VVH--EVQHGGWEVVVAHPKCRAFVTTIDTLRRIEEPSKAIQWLVDNHPGLVRQQDEDEP 587

Query: 521 VLLVDHI 527
           +  VD +
Sbjct: 588 IKWVDSL 594


>gi|254426317|ref|ZP_05040033.1| hypothetical protein S7335_999 [Synechococcus sp. PCC 7335]
 gi|196187731|gb|EDX82697.1| hypothetical protein S7335_999 [Synechococcus sp. PCC 7335]
          Length = 234

 Score = 68.0 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 76/224 (33%), Gaps = 28/224 (12%)

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
               GT  H  + +  +    +     +  ++Q  ++      L          L  +   
Sbjct: 10   AALGTALHAALAQFYQDWHYQEPLPSDAWLQQCWEN--NNAGLTDKQLADSWQLMQQY-- 65

Query: 866  SFLEHEEKIQSSI---EKIFVNIPAKMAI--ESIGIHLTGFADRIDLLKSGFVDITDYKT 920
                +E ++         +      +  +    I   L G  DRID +  G +++ DYK+
Sbjct: 66   ----YERELVPVGTMQRPLATEGRLQGTLQANDIEFKLVGRYDRIDFV-DGGLELIDYKS 120

Query: 921  GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980
              +P+  +A + ID QL L   AL+         + +  +  + L+   ++     +  K
Sbjct: 121  AKSPQLPSANE-IDLQLGLYYLALEQ-----RYGQSLKQMTLLFLRTGDRVSYEATEVHK 174

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
                 +  +  + L E        E+ + +      +S   + Y
Sbjct: 175  QQVQTVIGELARGLRE--------EEGWQARCGQQCRSCGYARY 210


>gi|313887113|ref|ZP_07820809.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923342|gb|EFR34155.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 1123

 Score = 68.0 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 91/836 (10%), Positives = 210/836 (25%), Gaps = 102/836 (12%)

Query: 185  ADFLKIASKYWTERLVELN--ASSPVGYQIALM------RAEAEHLMKGTKGPIIIAGST 236
               L    +   +   EL           I  +       A     +       +I    
Sbjct: 330  LQLLGEIQENVYKVSEELGITLLDDAKRLIRTLVSGEGSTAFIYERLGTKLTHHMIDEFQ 389

Query: 237  GSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH--- 291
             +          +      +   +    D       +            S          
Sbjct: 390  DTSRFQYENFVPLLEEALSSSGEIFIVGDVKQSIYRFRNSDPMLLQNDLSKDFPKDQQTL 449

Query: 292  --------------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                                 LL +    + +   L     +       +          
Sbjct: 450  NLPNNWRSAPAIVSFNNRFFSLLPYASELKLESSNLIQKVYDPEEVHQEVPDPNQNKIGG 509

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLDENKKKSAL 391
               +      +I        +    E     +    I   LR                A+
Sbjct: 510  VFIHQWEKTPEISQPTAATEEDDNAETTPPSQLQTKINYLLRHVIPSIRERGYKLSDIAI 569

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +T + +  +R+   +  +   ++            + +   +L+        + I  +++
Sbjct: 570  LTPNNDTLQRIAQAIILYNKELENDKDKNQHLQPLAFVSREMLSLDANPLYRL-IVEIMQ 628

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
              L   G  E+                  +      L       +A   +++        
Sbjct: 629  SVLVNVGASEE----------------LYSKSFEHRLAVTHYAELARSLSDSSALDLARC 672

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
              E        L   I++ + PL+T            ++ D+++     LQ         
Sbjct: 673  YQEGLSASLYELTLLIVEIVRPLITSADQSYIDALLDTVQDYSQDNYVDLQGFLEWLETH 732

Query: 572  LPNL--WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
             P L    ++  + L       I +   +    +  ++   RL++        ++     
Sbjct: 733  TPRLSLETQDALQLL------TIHSAKGLGFPVVCLLEYQMRLLEHTDTIWCRDEE---- 782

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                 E   L    + +  L   + P   A++      + ++ +L   ++     A    
Sbjct: 783  --IMAELHKLLGGNVEIPTLL-PISPTKEARSTLFREKIVAEEHLALLDR---INAFYVA 836

Query: 690  MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW-------- 741
            M      +     L EN   +  S   +RL+    T   +    +    L          
Sbjct: 837  MTRAKSEMHLI--LSENKGQSGTSINFERLISELVTQIQEPDHNQKPDLLSQETIDLQCS 894

Query: 742  ---TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA--VYARRILKLDFI 796
                   +    +      +  P       T   S+  QL++ P    + A   L++   
Sbjct: 895  ELKVSPSEDAEIKQRIFYYQTDPTTAPPKPTTPSSDTSQLVSIPGREQIGALAQLRVRRS 954

Query: 797  PHFKKDP-DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                    D    G   H +++E+    +  +       + +++D    +  +P      
Sbjct: 955  QSVSYQAQDAVRNGLFLHALLSEI--DYLEHD------ELLKLLDMKCLQGLIPQDQRDA 1006

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIP-AKMAIESIGIHLTGFA---DRIDLLKSG 911
               L  +        E   +SS  ++       +++ ++            DRI   +  
Sbjct: 1007 LAKLLEQALTDPKIAEYYDRSSGWQVINERSIVRLSQDTESGTRQARIERPDRILYDEEQ 1066

Query: 912  FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
               I DYK+G   + +   +    QL     AL    F ++     A L Y+    
Sbjct: 1067 QAVIIDYKSGG--EAQQYTERHKRQLRGYRKALLESGFKRVC----AYLLYLSADG 1116


>gi|293610237|ref|ZP_06692538.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827469|gb|EFF85833.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 684

 Score = 68.0 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 55/431 (12%), Positives = 115/431 (26%), Gaps = 62/431 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    Y     L    + I   T+RA  E+ +   +  G ++  L    +       
Sbjct: 62  KTIVARAAYLIDQGLPANQIQILTFTRRAASEIVARVEQHVGAQAKGL-RASTFHTFCMY 120

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +          + +    L + RL+                           N + 
Sbjct: 121 LLRRNPQAFGLNQFSIIDRDDQLLMFRLLRG---------------------KDKDNVLP 159

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            A  L D+       + K  +  AL  +    +       +    K + +R  E N    
Sbjct: 160 KAAELCDLYSYARNTQTKLSE--ALIKQLPDAYEHKTQ--IAELMKTYEQRKRERNFLDY 215

Query: 208 VGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                 +           + + G    +++     + P    L+  +        +    
Sbjct: 216 DDILSIVAVHLQNSEALTNWVAGFCQALLVDEMQDTNPLQWALLQPLIGKVK---LFCVG 272

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       +     ++ +        +          +  L +     + + ++SN +  
Sbjct: 273 DDAQSIYGFRGADFENIHSFKERIPDAE---------VLTLALNYRSTQEILDLSNWLLA 323

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            S +  +  L       +                    L    NE EEA  IA  L    
Sbjct: 324 HSPIDYQKQLQAHRGQGQKPQ-----------------LHLFGNEFEEANWIAQDLITRH 366

Query: 383 DE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
            +  N     ++      AR ++       I      G+ L  + H   + SLL  +   
Sbjct: 367 QQGANWHDHMVLVRSGYSARYLEGAFIAAEIPYRFIGGVKLLESAHVKDVLSLLRIVSNP 426

Query: 441 NDFMAIATLVK 451
           +D +A    + 
Sbjct: 427 HDDLAWMRFLT 437


>gi|114320846|ref|YP_742529.1| UvrD/REP helicase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227240|gb|ABI57039.1| UvrD/REP helicase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 683

 Score = 68.0 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 71/593 (11%), Positives = 141/593 (23%), Gaps = 60/593 (10%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +++ +   T +A  E+R         K   LP I +                      V 
Sbjct: 47  SAMVLLTFTNKAAGEMRERLAARLP-KGVDLPWIGTFHSFGSRLLREHGQRIG-----VP 100

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA----KNLADIIDIIE 160
               L++      +    L     D               A  L      +LA + D +E
Sbjct: 101 GNATLMDAEDSRRMLDALLAGPFPDRTRRQRAMEAQDALAAAGLDPTEPDHLAPMRDALE 160

Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                      L                         R   ++ +  +     L+R   +
Sbjct: 161 AMGFGPGATARLVQRLRR-------------YDAEKRRAAIMDFADLILLPSRLLRQAPD 207

Query: 221 HLMKGTK--GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
              +  +    I +  +  +  A   L+S +   P    V+   D       W      +
Sbjct: 208 LRARLREQLRDITVDEAQDTDGAQFHLLSLLI--PENRTVVLVGDDDQAIYEWRHARPAN 265

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                         Q  + +L          V    ++      R               
Sbjct: 266 LRRFIEEQ------QARVYRLERNYRSTPPIVDGAVSLVRHNRQRLEK------------ 307

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADR 396
                          +  + V L+      E A ++   +R  L    +  + A++    
Sbjct: 308 -------RPWAVRGPEQAAPVTLVRHTRAEEMAEAVVQDIRSRLRAGLSADEVAVLYRKN 360

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            LAR ++  L R GI   + AG+ L       ++ +         D  A++ L    L  
Sbjct: 361 RLARPLEGALLRHGIPYRVKAGMDLLGHADVRMMLAAGRLAANRRDVRALSRLAD--LIP 418

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                       +A + +   G         ++ L        +            +   
Sbjct: 419 GLGARGVSRLISSAGDPLTAAGQLPPQAAQAVERLRQALDNLFRLGPQALSQWCLQTPVF 478

Query: 517 KE----LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
            E     A   +        P    +  K +     ++       +  L        R  
Sbjct: 479 AEWLNHRARAALKRDGSRAAPEALDRALKPARARLGAVQRAINRRLAALDRESAPAQRWT 538

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
             L         SS     +   S   A  +EW ++         +    +  
Sbjct: 539 NALEIAASASDDSSGEDACVTLCSVHGAKGLEWPEVHVFGFTEGLMPLARDGR 591


>gi|298252946|ref|ZP_06976740.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
            vaginalis 5-1]
 gi|297533310|gb|EFH72194.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
            vaginalis 5-1]
          Length = 1401

 Score = 68.0 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 88/287 (30%), Gaps = 31/287 (10%)

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
             +L  +   Y +     +   +  + +                +S   +  +D  A   R
Sbjct: 1123 ADLMPKIDWYHNIQELKNRAEQLSNVENVNVTAVQRRAMFRSDYSRANEDFDDADAKRLR 1182

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK--------RINKNTPEINHLMKQIID 840
            +       P        +D GT FH    + +K         + + +     + ++ + +
Sbjct: 1183 KEWMAIIRPIPSVSSPASDLGTRFHAWAEQFVKAGCVNKNSIQYDVDENVDENAVENVAE 1242

Query: 841  SHF---EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-I 896
            +     +         +IW+          +  +   +     I    P    +  +G  
Sbjct: 1243 TCENISQNAKSSERKLLIWKQRL-------ITSKWAHR---RPIAAEQPIVAHVPELGDQ 1292

Query: 897  HLTGFADRID------LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
             + G  D I          S    I D+KTG  P K     L   QL      L   +  
Sbjct: 1293 IINGKIDAIFAGGLNPEDPSKLYTIVDWKTGRKPTKPQDIALKLGQLDWYRLLLSLMTKV 1352

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
             +D    A L+Y+ +    + +   + ++K   + L+E     LI +
Sbjct: 1353 PLDAID-ATLYYVNISD--ECEREIHAEQKTKDEILAELHSDTLISL 1396


>gi|169826779|ref|YP_001696937.1| ATP-dependent nuclease subunit A [Lysinibacillus sphaericus C3-41]
 gi|251764534|sp|B1HN90|ADDA_LYSSC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|168991267|gb|ACA38807.1| ATP-dependent nuclease subunit A [Lysinibacillus sphaericus C3-41]
          Length = 1238

 Score = 68.0 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 70/879 (7%), Positives = 189/879 (21%), Gaps = 145/879 (16%)

Query: 189  KIASKYWTERLVELNASSPV-----GYQIALMRAEAEHLMKG-------TKGPIIIAGST 236
             I S+ +    +E              QI  +  + E                +++    
Sbjct: 360  TIFSEQFRLAKLERGIIDFSDLEHYALQILTVEVDGELQPSPVALDLKKRFKEVLVDEYQ 419

Query: 237  GSIPATARLMSTV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT---TYSTHP 292
             +      ++  V +       +    D       +     K      S       +T  
Sbjct: 420  DTNMLQETILQLVKSGEEQDGNLFMVGDVKQSIYRFRLAEPKLFMRKYSEFLETPDATGM 479

Query: 293  QYSLAKLLDFLD-------------IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +  L                     +     + L + +  +   +    +  +P +   M
Sbjct: 480  RIDLNANFRSRKEVLNVTNYIFAQIMGERVGEILYDDNASLKP-AAPYDEKEVPVELVVM 538

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--------------- 384
                  E       K      L E    + EA  I   +R  +++               
Sbjct: 539  HPPQDEETVDEQEDKTDEASELEELKKSQYEARFIIDRIRQMMEDGTTVYDTKSMTERPL 598

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                  ++      +  +  E    GI +   +       L   I+ ++L  +      +
Sbjct: 599  KYSDIVILMRSMTWSTDLVEEFKLAGIPLYAESSKGYFDALEVMIILNVLKVVDNPYQDI 658

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
             +A++++ P       E    R  ++         +                  +K    
Sbjct: 659  PLASVLRAPFVGLTENELAKIRLADSKVPFYDALRQFIRSEGQGVQTTTF----EKLQRF 714

Query: 505  VPHWQSRLSEEDKELAVLLVDHIL---QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
            +  +++      +     L+  I         +      K        + D   +     
Sbjct: 715  MLAFENWRDLARRGSLSDLIWKIYLDTHYYEMVGAMPNGKQRQANLRILHDRALMYEQTA 774

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                    R +  +    +    +    +  +    +  ++ + ++     + G      
Sbjct: 775  FRGLFRFLRFIDRMRTRGDDLGTAKSIGEKDDVVRLVTIHSSKGLEYPVVFVAGMGRPFN 834

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                     +      L + D  +     +          PFL+   + +L ++  E   
Sbjct: 835  K--------MDFHHPYLFDQDFGLAVKAIDPENRITYTSLPFLALKEKKELEMRAEE--- 883

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                  +      +  +        N       W     +       + L+ R   YLDW
Sbjct: 884  --MRVLYVAMTRAKERLIL-VGSVKNWEKTRDNWQDAQNIPSDAPLQEYLRARANSYLDW 940

Query: 742  --TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF-SEIKQLINDPYAVYARRILKLDFIPH 798
                   +                 +        +         +    ++ L       
Sbjct: 941  IGPAVARHGDFASQATTSYKELDSPSHWWIQPIDTRHYSYDIQAFNDEIQQHLTTQEDEA 1000

Query: 799  FKKDPDRTDRGTLFHN---------IITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
               +          +           ++E+ +    +   E  +                
Sbjct: 1001 LLSEIKARFHAQYTYQKSTRKRSKTSVSEIKRLENLQRQEEPEYYFATPAKRTSTSIAPR 1060

Query: 850  PHIDIIWR-------------------------HLFHKISHSFLEHEEKIQSSIEKI--- 881
            P      +                                 + +  +   ++  + +   
Sbjct: 1061 PTFLQDQQLTGTEIGTAVHTVMQHIPQFGFDTIEAVKGFVANLVAKQLLTEAEGKVVPIK 1120

Query: 882  ------FVNIPAKMAIESI-----GIHLTGFADRIDLLKS----------------GFVD 914
                     I  +              ++    R+D                    G   
Sbjct: 1121 KVYHFFHTEIGQRFKQARQIRREMPFTIS----RVDEDGDAQIVQGIIDCLFEDEYGNWV 1176

Query: 915  ITDYKTGD--------NPKKETAQKLIDPQLSLEAAALK 945
            + DYKT              +        QL + + A++
Sbjct: 1177 LLDYKTDRILPHFAKEPALTKEIMGRYAVQLRVYSEAIE 1215


>gi|297518259|ref|ZP_06936645.1| exonuclease V subunit gamma [Escherichia coli OP50]
          Length = 443

 Score = 68.0 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/429 (9%), Positives = 90/429 (20%), Gaps = 58/429 (13%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L           +L         +      +L  L+     +    +        L+  
Sbjct: 63  PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196
                   L+   AD+ D         E L   +                 L  A   +T
Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254
             L +             +                + I G +   P   + +  +  H  
Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297
             ++      +    I +              ++                          
Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295

Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340
              LL        D   L +           +                +           
Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396
                 +    +    S +      + + E   +   L   L+E+     +   ++ AD 
Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415

Query: 397 NLARRVKLE 405
           +        
Sbjct: 416 DSYSPFIQA 424


>gi|33239787|ref|NP_874729.1| superfamily I DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237313|gb|AAP99381.1| Superfamily I DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 807

 Score = 68.0 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 69/756 (9%), Positives = 191/756 (25%), Gaps = 135/756 (17%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV- 103
           + +     T +A +E++     +  +K   L  I    +  +   T  + +   L   + 
Sbjct: 56  SEILAVTFTNKAAREMKDRLEILLAQK---LAKI----EFGQPFSTLKISIQSELRTRIY 108

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA-----NAIWLAKNLAD---- 154
             + + + +     ++   L   I+    +  L      +     +A+ L K +      
Sbjct: 109 REVIKEIWIGTFHALFARLLRFDIEKYVDKEGLKWTRHFSIYDEKDALSLIKEIVTEDLQ 168

Query: 155 -------------IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                         I   + +    + L                     A + + + L  
Sbjct: 169 LDPKRFEPKKIRWAISNAKNKGILPDILEESAEGLRS-------RLTAKAYRVYRKALAA 221

Query: 202 LNASSPVGYQIALMRAEAEHLMKG-----TKGPIIIAGSTGSIPATARLMSTVA------ 250
            NA       +  ++   +              +++     +      L+  +       
Sbjct: 222 NNALDFDDLLLLPVQLLQQSKETRDYWHKRFKHLLVDEYQDTNWTQYELIKLLVTNGEPP 281

Query: 251 ---NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
                  G  V    D       +     +       +   ++   Y             
Sbjct: 282 SSFKAWEGRSVFVVGDADQSIYSFRAADFRILMGFEQDFGANSKGNY------------- 328

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                  +   ++       S      ++    N + ++  +   +     + L   D+E
Sbjct: 329 ------DSNVVKLEENYRSTSNILEAANSLISNNKERIDKVLKATRSSGDLIKLTRCDDE 382

Query: 368 REEAISIAIALR----MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
             EA ++   +R     + + N    A++      +R ++  L R+ I   +   +    
Sbjct: 383 IAEAEAVVHRIRLIDAANNNLNWSDVAILYRTNAQSRVIEESLVRWNIPYIVVGSLRFYD 442

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                 + + L  +   +D +++  ++  P                       +      
Sbjct: 443 RREVKDILAYLKLLINPSDSVSLLRVLNVP-----------------------KRGIGKT 479

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
            I            T  +    P     L     +  +   + I +  + L +    +  
Sbjct: 480 TIQKFTDAASQLGVTVWDIVTDPEAIRSLGGRSSKGLLEFREIIQELQSHLNSSGPAEII 539

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                      + +    + + +            EE    +  + +  E G        
Sbjct: 540 RLA-------LEKSGYIKELISIATDEAEERRRNLEELVNAALQYQEENEAGD------- 585

Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                +           K    + + ++    S+ L F  + L G+ +G++P   +    
Sbjct: 586 -LEGFLATAALASDADNKDSSLNRVTLMTLHSSKGLEFPIVCLVGMEQGLFPSYRS---- 640

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLREN-----NIPTIASRWLQ 717
                     L        +    +      +  L    +           P ++S +L 
Sbjct: 641 ----------LDDPASLEEERRLCYVGLTRAKEKLCLFHANERRLWGGMREPAVSSIFLS 690

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
            +          ++   G   L    +L+  T+   
Sbjct: 691 EIPSELIEG---DIPLSGGTVLRRDNRLERLTRVDR 723


>gi|150377540|ref|YP_001314135.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
 gi|150032087|gb|ABR64202.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
          Length = 1051

 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 79/789 (10%), Positives = 175/789 (22%), Gaps = 78/789 (9%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVG-----YQIALMRAEAEHLMKGTKGPI 230
                         +     +                     +   R++           +
Sbjct: 289  DAERHLTALVHGAQEIMSAYENEKRARGLIDYADMIVETEVLLRTRSDILDAALAEIDCV 348

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            +I     + P    ++  +A     A+++   D       +     + +    +    S 
Sbjct: 349  VIDEFQDTNPVQFAMLWRLAARAPRALIV--GDRKQAIMGFQGADPRLSEALDAAHPASV 406

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
             P     +    +            V+            +                    
Sbjct: 407  DPLTQNWRSDPRIM---------TFVNAIGPALFPSGYDALKSMRPKSGETALEFIEFDG 457

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
            +  K F  +A    D   ++ + I  + + +        A++      ARRV   L  FG
Sbjct: 458  SKAKVFEGIAAHARDLTDQKILIIDKSTQETRQARPADIAILVYSGIDARRVATSLRDFG 517

Query: 411  INID-ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            + +     G  LS      +  + L  +    D +A   L+     +       L+ A +
Sbjct: 518  LPVRLAEDGWFLSQ--IIQVARAALALVADPTDRLAALLLLSLGPDRMSLDA-SLAAAID 574

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
               +   R    +    + + L       +               +       L     +
Sbjct: 575  DNLIQFDRVRALAEFAEEARHLTASAALPRVLQIAGIEEWISTLPDRAAAEADLGRLFAE 634

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                                 +                   +     +E EG  +S+   
Sbjct: 635  ASAF--DSAETSLREAVGFHGNSLQSFLGWLADQAERGLDYRPDREGWEVEGIEVSTWH- 691

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                        A +  +    ++ G         +     +    +   NFD ++    
Sbjct: 692  ------------ASKGREWPITIVGGMDFSFPERGN----TMRAEFTSFGNFDNVLDSAG 735

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS----LRE 705
                   +  +   +    + +      +     A   +      R  +           
Sbjct: 736  LSWFPSFDCPEAQIVFADRRVE------QDEREAARALYVALTRARDRLVLALPLKEGSP 789

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
            +  P   +  L+R   LG          +    L  T   D     P          +  
Sbjct: 790  DKRPETMADLLRRRTQLGLGSGTVTACGQQVPALCRTIPKDTEYVYPDASADSGVHKVWG 849

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP--------DRTDRGTLFHNIIT 817
               T          + P ++ A        + H               T+RGT +H    
Sbjct: 850  VDETSELVARTPWRSSPSSLAAPDGRLGPALTHIDLGVPVPKQKFGSATERGTAYHLAFR 909

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
             L ++               + D   +           W                     
Sbjct: 910  VLAER---PEFSARLPAATGLSDDTIKAIEGQASALRAWLGGL----------------G 950

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937
              ++   +P ++  +          D +       + I D+KTG  P          PQL
Sbjct: 951  FHQLSFEVPLQLRADDGSET-NAIIDLLAESDD-ALIIVDHKTGPCPDPNLRFGGYLPQL 1008

Query: 938  SLEAAALKA 946
            +  A  L  
Sbjct: 1009 TAYADLLTE 1017


>gi|238923931|ref|YP_002937447.1| DNA helicase II [Eubacterium rectale ATCC 33656]
 gi|238875606|gb|ACR75313.1| DNA helicase II [Eubacterium rectale ATCC 33656]
          Length = 1220

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 66/210 (31%), Gaps = 10/210 (4%)

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
              +L + +    Y   +              + +     D  A  A    +     +   
Sbjct: 983  VSELKHDSMVEKYDSTEREAERPKFLLEEKETYVPDFARDDEAGGASN--ESKEPKNAAG 1040

Query: 802  DPDRTDRGTLFHNIITEL----IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                  RGT  H ++  L    +     K+   ++  +K+ +D   EK  +   +  + R
Sbjct: 1041 VNQGALRGTAVHRVMECLDFKSLCDIDTKDHVAVSAFVKKSMDEMLEKRLITDDMYRLTR 1100

Query: 858  HLF-HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
                 +   S +            ++   P  M  +  G+ + G  D +  L++  + + 
Sbjct: 1101 PKLIEQFISSDVAARMAQADKRGDLYKEKPFVM--DYEGVLVQGIID-VFWLENDKIVLL 1157

Query: 917  DYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            DYKT      +        QL L A AL  
Sbjct: 1158 DYKTDRVNAAKELIDRYSTQLKLYADALGR 1187


>gi|170702278|ref|ZP_02893177.1| exodeoxyribonuclease V, gamma subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170132810|gb|EDT01239.1| exodeoxyribonuclease V, gamma subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 1112

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 79/858 (9%), Positives = 185/858 (21%), Gaps = 55/858 (6%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            + VP+    + L  +     G  + +     +       ++    +      P  S   
Sbjct: 35  QVIVPSAALRRRLELDIAARHGVCANVEFTYLA-------QWLWAQIGRVLTVPTRSPFA 87

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN-AIWLAKNLADIIDIIETEEKKW 166
               + R   ++            P     L  S       LA+ +A ++D   T   +W
Sbjct: 88  PDRLVWRCYRLFAQAAGGAPWLASPRLAAYLSASDDAMRYELAQRVAAVLDHYLTYRPEW 147

Query: 167 EDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVEL-NASSPVGYQIALMRAEA 219
                                  A D     +  W   L EL ++ +P  ++  +     
Sbjct: 148 LAAWQAGESVLAGDAAPRGISDAARDDEHWQAALWRALLAELSDSGTPPAHRFLVEARNL 207

Query: 220 EH---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
           +            + +       P    L+  ++   +  +             W  I  
Sbjct: 208 DPETVARADWPESVSVFALPTMPPLHVALLRELSRWIDVRVYALNPCR----EFWFDIVT 263

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            +            + Q     L ++    +  +  L  ++                P  
Sbjct: 264 AAHAEALDAAGRLDYQQVGHPLLAEWGRQTQAQLHMLHELTESAALGDASRFVGNPAPTW 323

Query: 337 SDMRNTDILENKIPNI---QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393
                  IL+ +             + +    +   +   +   L    D +    A   
Sbjct: 324 LARVQNAILDLQPEAELGDPPAERGIEVHVCHSLARQLEVLHDRLLAWFDADATLQASDV 383

Query: 394 ADRNLARRVKLELTRFGI----------NIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                       L                  I+   P      + +L   L    +    
Sbjct: 384 LVAVADLAAAGPLIDAVFGTAGAGGARVPYRITGLPPSQANPVARVLLEWLALPERQVGA 443

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
             +   ++       +     +       L A    +         + V     T  +  
Sbjct: 444 PELVEWLRVDAVAARYGIDAAALETVQTWLAAAGARRGLSPTASDDAAVPAPRHTFSDAL 503

Query: 504 HVPHWQSRLSEEDKELAVLL---------VDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                   + E    +   L          + + +                   +   W+
Sbjct: 504 ARLFLGYAMPEGAAPVGAWLPIEAATGSEAELLGRLARFTDDLDGFSRRLASAHTPRAWS 563

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           +L    L             L    +   L ++ + + E        A      +T  +D
Sbjct: 564 ELFADTLARFFDSGAAYADALAGVRD--ALDAMLAAMTEGAPDEALPAAVVRAGLTAALD 621

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN- 673
                        +        R L +  + L G+++GV P     + F    +   L  
Sbjct: 622 D--PARGGVPWGGVTFSSLTSLRGLPYRVVCLLGMDDGVLPSLARADEFDLMAVLPKLGD 679

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
            +  +            A     + YT     +N P   +  +  LL             
Sbjct: 680 RQRRDDERNLFLDLLLAARDRLLIAYTGRSIRDNAPLPPAALVDELLDHLALVTAGADTA 739

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
            G         +     QP                  +  + ++                
Sbjct: 740 PGAVDAARRAFIVEHPLQPFAAE------YFRPGSELASYDAERATLASLLAAEAARDAT 793

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
              P F +         +  +      +            ++     +            
Sbjct: 794 REQPFFTQPLPAEPVEPVAFSEFERFWRHPARALLRARLGIVLSDAQAELLDTEPFALDF 853

Query: 854 IIWRHLFHKISHSFLEHE 871
                L  ++    +E +
Sbjct: 854 AGSDALAERVLPLLIESD 871


>gi|283781176|ref|YP_003371931.1| hypothetical protein Psta_3407 [Pirellula staleyi DSM 6068]
 gi|283439629|gb|ADB18071.1| conserved hypothetical protein [Pirellula staleyi DSM 6068]
          Length = 274

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 73/268 (27%), Gaps = 27/268 (10%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S+S I      P     R +  L               G+  H        + ++ N  
Sbjct: 22   ISWSAISTYQACPLRWCFRYVHGLPE----AFVSSSLVFGSAIHQAAELHYYELLSGNPA 77

Query: 830  EINHLMK-----QIIDSHFEKENLPPHIDIIWRHLF-HKISHSFLEHEEKIQSSIEKIFV 883
                 +        ++            DI        ++  +F         + + + V
Sbjct: 78   PALDTLLSAYHAAWLERDLASIKFGKDEDINSLSDLAERVLSAFRASPLAN-PNGQIVGV 136

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP--QLSLEA 941
                +  I      L    D I L +   + +TD KT     + +  +  D   QL L +
Sbjct: 137  EEELRGRIVEGCPELLARVDLI-LDEGSELVVTDLKT--AKSRWSQHQAHDSGGQLMLYS 193

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
               K      +   K   L ++ + +              SA    +++     ++   +
Sbjct: 194  ELAKE-----LMPGKPIRLQFLVVTKSKSPVVEMRKISIDSAR--IKRTRSIFWQVWQAM 246

Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
            + G    I +   S  +     +    R
Sbjct: 247  RRG----IVYPIPSPMNCPNCPFQKPCR 270


>gi|256026773|ref|ZP_05440607.1| DNA helicase II [Fusobacterium sp. D11]
 gi|289764769|ref|ZP_06524147.1| DNA helicase II [Fusobacterium sp. D11]
 gi|289716324|gb|EFD80336.1| DNA helicase II [Fusobacterium sp. D11]
          Length = 919

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/403 (13%), Positives = 133/403 (33%), Gaps = 56/403 (13%)

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW-----PK 656
             ++++I+ +    E    +   +  +  L   +S+ L F  +I+  L           +
Sbjct: 540 FTKYLEILKQSRVDEIFSEEDYPNDCIPFLTIHQSKGLEFPVVIVFSLYSKPNVSGDLSR 599

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRENNIPTIASRW 715
            T+ +  ++   +     +  ++Y       +   +  ++L I +   +  +       +
Sbjct: 600 QTSIDRLINSNSRIS---EIDKEYFDFYRKFYVAFSRAKNLLILSCYEKGVSENFKPFFY 656

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
             R +     D                  LD  +K             + +      ++I
Sbjct: 657 SVRGVNSLQFDINQIN-------------LDEVSK------------KDERRILSYTTDI 691

Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
                 P   +      +    +   D    + G + H  I  + K  + K     ++ +
Sbjct: 692 ALYRYCPMKYFL-----VREKEYSTFDKKVFNLGIITHKAIEHINKSVLQKQEIFSDNYI 746

Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
           + ++ + ++ +N+    ++        I   ++E E+     I+KI      ++      
Sbjct: 747 ENLVKNIYKFQNIDLDNNV---ERIINIVKKYMEDEKDNFKYIKKIEA-SEFRVE---DN 799

Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ--KLIDPQLSLEAAALKAGSFSQID 953
             L G  D I   ++  + I D+KTG        +       QLSL    L+     +I 
Sbjct: 800 YILYGQIDLILEDEN-EIKIIDFKTGK---YNEIEFSSNYRQQLSLYKLLLQKKYDKEIK 855

Query: 954 CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
                 L+Y+   +  K   I ++  K   + +++ +   L +
Sbjct: 856 ----TYLYYLEEDEPKKEILIDDEDLKEDLENITKTTQDILDK 894


>gi|260425183|ref|ZP_05779176.1| ATP-dependent nuclease subunit A [Dialister invisus DSM 15470]
 gi|260404424|gb|EEW97971.1| ATP-dependent nuclease subunit A [Dialister invisus DSM 15470]
          Length = 1285

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 67/260 (25%), Gaps = 29/260 (11%)

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
             R             K      +    + +   +       +   P      +   S + 
Sbjct: 1033 LRWQYSFNGAVQTPAKLTATAAVALKEQQESGAEGIEPFSSETLAPAMESIPSGEESSLL 1092

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
                DP A  A                  T  GTL H  +  +   +      ++   ++
Sbjct: 1093 PGYEDPPAFLAE-----------TPAFTGTSYGTLMHKAMELIDLTKPYDGISDLRKEVE 1141

Query: 837  QIIDSHFEKENLPPHIDIIWRHLF-HKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIE-- 892
            +I +     E     +    ++    +    F E            I   +P  + +   
Sbjct: 1142 RIYEEKGFTEEEKNALLQDSKYRAPLRDIRRFTESALGRAMKKAAVIRKEMPFSLLLPAK 1201

Query: 893  --------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
                       + + G  D + + + G + I DYKT      E  Q     QL +     
Sbjct: 1202 RFYPGCEEGEKVFMQGIMDCL-IERDGHIVIIDYKTDRTDSVEELQSHYRTQLLVY---- 1256

Query: 945  KAGSFSQIDCRKVANLFYIR 964
               +  Q+  + V   +   
Sbjct: 1257 -KDAAQQLLGKPVIGAYLWS 1275


>gi|237729781|ref|ZP_04560262.1| exonuclease V subunit beta [Citrobacter sp. 30_2]
 gi|226908387|gb|EEH94305.1| exonuclease V subunit beta [Citrobacter sp. 30_2]
          Length = 1181

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 95/901 (10%), Positives = 213/901 (23%), Gaps = 83/901 (9%)

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
            L   ID + +E      L  L           A   ++ A      R  EL     +   
Sbjct: 309  LFVAIDELLSE---PLTLRDLVIT-------RALAEIRSAVAEEKRRRGELGFDDMLSRL 358

Query: 212  IALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
             A +R+E        ++      +I     + P   R+   +  H     +L   D    
Sbjct: 359  DAALRSESGDALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIWQHQPDTALLLIGDPKQA 418

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEMYGRSMV 326
               +      +     S  +      Y+L         +          + +    R + 
Sbjct: 419  IYAFRGADIFTYMKARSEVSAH----YTLDTNWRSAPGMVNSVNTLFSQMDDAFMFREIP 474

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
             S          +R     E +           +    D +   A   A  +R  L    
Sbjct: 475  FSPVKSAEKNQALRFVLHGETQPAMSMWLMEGESCGVGDYQSYMAQVCATQIRDWLKAGH 534

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISA--GIPLSTTLHSSILTSLLNAIFKLNDFM 444
              +A + + +  +     +++    +   +A     L+     S+  S  +++F+  +  
Sbjct: 535  SGAAQLVSGKASSPVRASDISVLVRSRQEAALVRDALTQLAIPSVYLSNRDSVFETLEAQ 594

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
             +  +++   A      +   R+  A  ++ L          D  +              
Sbjct: 595  ELLWVLQ---AVMTPERENTLRSALATSMMGLNAQDIEALNTDENAWDAVVEEFDGYRQI 651

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                           A  + +++L             + +          +     ++ +
Sbjct: 652  WHKRGVMPMLRALMTARQIAENLLATAGGERRLTDILHISELLQEAGSQLESEHALVRWL 711

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKI--IETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                     N   ++          KI  I     ++   +    I    +  +      
Sbjct: 712  SQHILEPDSNASSQQLRLESDKHLVKIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR 771

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS---RVMQSDLNLKTAEK 679
                 +  L   E  +   +   L      ++   T      S     +      K  + 
Sbjct: 772  SSFEAVLDLSDAEESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDT 831

Query: 680  YIGQAAH----------DFEMANGTRHLIYTR---SLRENNIPTIASRWLQRLLVLGGTD 726
             + Q+A           D     G    + +                +  Q +       
Sbjct: 832  DVHQSALGRLLQKGEPMDAVGLRGAIEALCSNDIACQTPAQPDGEPWQVAQAVSSELSAK 891

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                          ++              P+              S +        A  
Sbjct: 892  ILQRKPGDSWRVTSYSGLQQRGQGIAQDLIPRLDIDAAGIGEVIEESGLTPHQFPRGASP 951

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL-IKKRINKNTPEINHLMKQIIDSHFEK 845
               +  L     F +  D        H +  +L +       TP +   +  I+ +   +
Sbjct: 952  GTFLHSLFEDLDFTQPVDP-------HWVEEQLALGGYDAHWTPILTEWLDAILQAPLNE 1004

Query: 846  ENLPPHI---------DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
              +                +  +   +  + L+   +    +           A++ + +
Sbjct: 1005 TGVSLSQLSAREKQVEMEFYLPISQPLMANQLDALIRQYDPLS------AGCPALDFMQV 1058

Query: 897  H--LTGFADRIDLLKSGFVDITDYK-----------TGDNPKKETAQKLIDPQLSLEAAA 943
               L GF D +   + G   + DYK           T             D Q  L   A
Sbjct: 1059 RGMLKGFIDLVFRHQ-GRYYLLDYKSNWLGEDSSAYTQQAMASAMQAHRYDLQYQLYTLA 1117

Query: 944  LKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
            L      +I      R    + Y+ L+     +            EL     +     V 
Sbjct: 1118 LHRYLRHRIADYDYERHFGGVIYLFLRGVDSENPQQGIYATRPDGELIALMDEMFAGAVQ 1177

Query: 1000 L 1000
             
Sbjct: 1178 E 1178


>gi|330959506|gb|EGH59766.1| putative UvrD helicase [Pseudomonas syringae pv. maculicola str.
            ES4326]
          Length = 1144

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 87/771 (11%), Positives = 196/771 (25%), Gaps = 117/771 (15%)

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAE-------AEHLMKGTKGPIIIAGSTGSIP 240
            L+      T  +   N+          ++A           L +     I++     +  
Sbjct: 397  LRYLLANLTLAMEGTNSLDFPEIAQRAIQALGAGETVGDALLEEDRILHIMVDEFQDTNQ 456

Query: 241  ATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            A   L+  +    +  +   +    D      ++                          
Sbjct: 457  AQYDLLKLLVENWDPSDNRSIAYVGDGFQSIYLFRGADLNLFTSVVEA------------ 504

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                    K+ D+ RL      + G     ++++                     +K   
Sbjct: 505  ---KAFGPKQMDILRLTVNFRSLPGVVEWNNETYAQVFKDSAYE----FVPSVAFRKGDG 557

Query: 358  DVALIEADN-EREEAISIAIALRMSLDENK-KKSALITADRNLARRVKLELTRFGINIDI 415
             V++      +  EA  +   ++ +L ++  K  A++   R+  + +   L   GI +  
Sbjct: 558  GVSVHPVATGQIGEAEEVTKVVQEALAKDPSKSIAILVRGRSHLKHILPMLKDAGIEVRG 617

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                P+      S + SL+ +++   D  A   L++       + +  L    + +   A
Sbjct: 618  KDIDPIGEAAAVSEVISLIRSLWHSADRSAWIALMRAAFVGLSWADCLLVARGHNVIENA 677

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            LR                                     +D   A L  D +++ +  L 
Sbjct: 678  LR-------------------------------------DDAVQAQLTSDGLIRVLRLLD 700

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                 K S+ G+          +                +   E     +        T 
Sbjct: 701  VLDGVKRSSRGSE---------LGWAVKSAWIALGGPATVNSGEMDDVETIFKLLTTHTE 751

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN----- 650
            S    +   +   I +            K+  + ++    S+ L +DT+++ GLN     
Sbjct: 752  SGDLTDPQAFFRAIDKAYAS-------PKAGAVTVMTCHGSKGLEYDTVLIPGLNKGGAK 804

Query: 651  --EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM------ANGTRHLIYTRS 702
                ++        F       DL+  T E  + +                  ++  TR+
Sbjct: 805  DDAPLFYFRQMDGVFSVVPNLGDLDATTPESRLFKFVGRMVRKDISDEVCRAAYVGTTRA 864

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC--YLDWTRKLDYTTKQPHYKR---- 756
              + ++     R+                        +     ++               
Sbjct: 865  KEQCHLFVCVDRFPAAEGEAQKEKEIKPAAGSLAECLWSAIGAQVKAVAPAFPIVADTDS 924

Query: 757  --PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
              P               +      ++   V     L  +       D      G ++H 
Sbjct: 925  GVPSKARLAPGYKVDLPKTVFVPAASN-DQVPTENELNDELREEEGSDYRAKTIGIVYHW 983

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL-----E 869
             + ++ K+ I            Q + S   +E  P            ++  + +     +
Sbjct: 984  FVEQIGKQGIELWDETRVRTKAQSVASMLRREGFPAAEVPQAVSRILRLLSNTVNSIHGQ 1043

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
               K +         +            +  F DR      GF  I+DYKT
Sbjct: 1044 WILKKRPG---SGHEVQVSAYRNGR--WVHRFLDRPFEDG-GFYWISDYKT 1088


>gi|303326130|ref|ZP_07356573.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
            3_1_syn3]
 gi|302864046|gb|EFL86977.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
            3_1_syn3]
          Length = 1125

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 69/664 (10%), Positives = 147/664 (22%), Gaps = 79/664 (11%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +   R +I   L   L E  R           +     T+RA  ELR           
Sbjct: 538  PGAGKTRVLI-GRLQRLLEEGARPQ--------DLLAVTFTRRAAGELRERLSAALPH-L 587

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
            + LP   +L  +   +                     L LA           D    L+ 
Sbjct: 588  SRLPQCDTLHGLAWGELRKAEP-------------HCLLLAE----------DAAFRLFS 624

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
             +    P      +W A NLA          K+      L                    
Sbjct: 625  AANADQPARRLRTLWDALNLAR------ESRKEPAQGSDLDEAAAR-------------Y 665

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKG--TKGPIIIAGSTGSIPATARLMSTVA 250
            +        +           L+        +       +++       P    ++  + 
Sbjct: 666  RQRKNAQSGVRYVDYADLLDWLLEQAPNLAQRPDGPWRHVLVDEVQDLSPVQLTVIRALL 725

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
              P+G       D       +           S ++  +  P   + +L       ++ +
Sbjct: 726  -PPDGRGFFGIGDPDQAIYGFRGA-----TGQSEDSLRACWPTLMVYRLGQSYRASQDVL 779

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                N+  +  GR   +  +        +        +   +      +    A    ++
Sbjct: 780  DMAQNLL-QGRGRCGNLHAAKPLRAQLQLFAAPDERAEARWLAGRVQRLIGATAHTLLDQ 838

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A + A A  +    +    A++   +     ++  L + GI     A          +  
Sbjct: 839  AQNRADAGELDNSLSPGDVAVLVRLKAQIPPLRAALEQMGIPCAAPAQEEFWQEPVCARF 898

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             +L        D +                            L   +             
Sbjct: 899  LALAAGHCGFADILPTPP------DLPAPAAPAEPLPWPEGNLPKPQEMTTWLGAQAWTG 952

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
             +  +    ++             ++      L   +       +     +      L  
Sbjct: 953  ELFCQSRQWRSL--------CRLWQECGGWQPLFQRMAWLHEAELVRAKAEQVQILTLHA 1004

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA-IEWIDII 609
            S   +     L  +          L FE       +  +        ++A+      +  
Sbjct: 1005 SKGLEFQAVFLPGLESGLLPLRRELLFENA---AENTMNDADAAVPGVEADPEARLAEER 1061

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
              L  G T   +    S          +L    +  L  + +         +   S    
Sbjct: 1062 RLLYVGLTRAARALFVSYCARRTLYGRKLRLAPSPFLAQIRDFCRQSTLTPHKRKSEEHL 1121

Query: 670  SDLN 673
            S L 
Sbjct: 1122 SLLG 1125


>gi|254442638|ref|ZP_05056114.1| UvrD/REP helicase subfamily [Verrucomicrobiae bacterium DG1235]
 gi|198256946|gb|EDY81254.1| UvrD/REP helicase subfamily [Verrucomicrobiae bacterium DG1235]
          Length = 665

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 87/711 (12%), Positives = 199/711 (27%), Gaps = 122/711 (17%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR---SEFIEITGKKSTILPIIKSLGDV 84
            TL     Y     +    + +   T +A +E+     E   + G++        S+G  
Sbjct: 50  RTLTYRVAYLLSQGVRPGEILLLTFTNKAAKEMLSRVEELTTVEGRR-FWGGTFHSIG-- 106

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +       + +L    + +      A  +L    +  +         P   P   ++
Sbjct: 107 --HRLLRMHGEAIDLPKNFTILD--AGEAETVLKHAVESVNSAFFKDKTHPK--PGPLSS 160

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
            I +A+N  + I+           +     + +        D +   +  + +R    N 
Sbjct: 161 IISMARNTRESIER---------TILDFFPQHHD-----YIDQIDSFALAYEKRKRAQNV 206

Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  +  ++            +      ++     +    A +   V        ++
Sbjct: 207 VDYDDLLVFWLKLLETAPEVAEYYQNRFSHCLVDEYQDTNVLQAAI---VDKMAPHHRIM 263

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       W     ++            HP   + ++        E    L   +  
Sbjct: 264 AVGDDAQCIYSWRGANYENILTFPDR-----HPGAEIHRIEINYRSTPEI---LNLANAV 315

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
           +  RS    +  L P  +  +                    +++A + RE+A  +   +R
Sbjct: 316 IKNRSSQGFEKELRPHKASSQKPY-----------------VVQAMDAREQAQFVITRIR 358

Query: 380 MSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
             +DE  + ++ A++      A  +++EL+R G++  I++G+      H   L + L  +
Sbjct: 359 GLIDEGRDPREIAVLYRSHFAALDMQMELSRAGVSYQITSGVRFFEQAHIKDLVAHLRLV 418

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
           +   D  A   +    L      EK   +  +    VA +   +  D +  +       A
Sbjct: 419 YNPADVSAFLRIF---LLLPKVGEKTGQKLYDHTLAVAKKHEIDFIDALRHEETTKKAPA 475

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
             + +        R  ++  +                    T        ++I  W    
Sbjct: 476 AARADWESLALSLRDMKQIAD--------------------TGSPDEVVQIAIDGW---- 511

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                 +          L         ++ F ++ E  + I             L++ ET
Sbjct: 512 --YSSYLQGAYANYSNRLEDLTSLVGFAARFDEMQELIAQIT------------LLNSET 557

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                E    + +    +++ L FD + L G  +G +P   + +   +   +        
Sbjct: 558 SGRMDESDEAIRLTTVHQAKGLEFDIVFLIGAADGFFPTRRSVDSGDTEEER-------- 609

Query: 678 EKYIGQAAHDFEMANGTR-HLIYTRSLRENNIP----TIASRWLQRLLVLG 723
                     +      R  L                   SR+LQ L    
Sbjct: 610 -------RLFYVALTRARDELYVLYPKMNTKGGPSMFLTPSRFLQELPTEL 653


>gi|312963948|ref|ZP_07778419.1| DNA helicase II / ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
 gi|311281983|gb|EFQ60593.1| DNA helicase II / ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
          Length = 727

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/591 (9%), Positives = 130/591 (21%), Gaps = 104/591 (17%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
            + R L LA        +L+ R      +++  P S LS+  +   A  +   +  ++  
Sbjct: 23  PVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRHRIEQLMG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  ISPAGMWVGTFHGLAHRLLRAHWQEAGLAQTFQILDSDDQQRLVKRVIRELGLDEQRWPA 141

Query: 198 RLVE---LNASSPVGY----------------------------------QIALMRAEAE 220
           R  +                                                 L+RA   
Sbjct: 142 RQAQWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYEAACVRAGVIDFSELLLRALDL 201

Query: 221 HLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                            I++     +       +  +A   +  +V+   D       W 
Sbjct: 202 WRDNPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAKGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++    S +                              V+  +       +    
Sbjct: 260 GAKIENIYQYSEDFPD--------------------------AVTIRLEQNYRSTAGILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +     NT  L  ++         + L  A NE +EA  +   +  +L     +   A
Sbjct: 294 AANALIANNTGRLGKELWTDGGEGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + L  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYL-SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
             P    G              ++      +       L       +            +
Sbjct: 414 NIPARGIGEKTVEAIRDHARHADVSMWESMRLLIANKGLTGRAAGALGVFVELIENLAAK 473

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
                       ++    L         +  +        +    +      ++  L   
Sbjct: 474 CADMPLHLMTQTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARAFENTEEDEELTPL 533

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                    E G T +      I+  +   A  +E+  +    ++      
Sbjct: 534 AAFLGHASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPH 584


>gi|296329387|ref|ZP_06871887.1| DNA helicase II [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296153507|gb|EFG94325.1| DNA helicase II [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 919

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/415 (13%), Positives = 140/415 (33%), Gaps = 61/415 (14%)

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL-NEGVWPKNTAK 660
              ++++I+ +    E    +   +  +  L   +S+ L F  +I+  L ++     + ++
Sbjct: 540  FTKYLEILKQSRVDEIFSEEDYPNDCIPFLTIHQSKGLEFPVVIVFSLYSKPNVSGDLSR 599

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQR 718
               + R++ S+  +   +K        F +A       L+ +   +  +       +  R
Sbjct: 600  QTSIDRLINSNSKISEIDKEYFDFYRKFYVAFSRAKNLLVLSCYEKGVSENFKPFFYSVR 659

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
             +     D                  LD  +K             + +      ++I   
Sbjct: 660  GVNSLQFDINQIN-------------LDEVSK------------KDERRILSYTTDIALY 694

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
               P   +      +    +   D    + G + H  I  + K  + K     ++ ++ +
Sbjct: 695  RYCPMKYFL-----VREKEYSTFDKKVFNLGIITHKAIEHINKSFLQKQEIFSDNYIEDL 749

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
            + + ++ +N+    ++        I   +++ E+     I+K+      ++        L
Sbjct: 750  VKNIYKFQNIDLDNNV---ERIINIVKKYIKDEKDNFKYIKKVEA-SEFRVE---DNYIL 802

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQ--KLIDPQLSLEAAALKAGSFSQIDCRK 956
             G  D I   ++  + I D+KTG        +       QLSL    L+     +I    
Sbjct: 803  YGQIDLILEDEN-EIKIIDFKTGK---YNEIEFFSNYRQQLSLYKLLLQKKYDKKIK--- 855

Query: 957  VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN---GEQPF 1008
               L+Y+        +     K+    DE  ++ L+N+ + V  + +    + P+
Sbjct: 856  -TYLYYL--------EEDEPKKEILIDDEDLKEDLENINKTVQDILDKKFPKIPY 901


>gi|161525259|ref|YP_001580271.1| exodeoxyribonuclease V subunit gamma [Burkholderia multivorans ATCC
           17616]
 gi|189350003|ref|YP_001945631.1| exodeoxyribonuclease V subunit gamma [Burkholderia multivorans ATCC
           17616]
 gi|160342688|gb|ABX15774.1| exodeoxyribonuclease V, gamma subunit [Burkholderia multivorans
           ATCC 17616]
 gi|189334025|dbj|BAG43095.1| exodeoxyribonuclease V gamma subunit [Burkholderia multivorans ATCC
           17616]
          Length = 1112

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 78/860 (9%), Positives = 187/860 (21%), Gaps = 47/860 (5%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I VP+    + L  +     G  + +     +       ++    +      P  S   
Sbjct: 35  QIIVPSAALRRRLELDIAARHGVCANVEFTYLA-------QWLWTQIGRVLDVPARSPFA 87

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN-AIWLAKNLADIIDIIETEEKKW 166
               + R   ++            P     L  S       LA  +A ++D   T   +W
Sbjct: 88  PDRLVWRCYRLFAQAPEHAPWLASPRLAAYLGASDDAMRYELAHRVATVLDHYLTYRPEW 147

Query: 167 EDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVEL-NASSPVGYQIALMRAEA 219
                                  A D  +  +  W   L EL ++ +P  ++  +   + 
Sbjct: 148 LAAWQAGESVLAADGAPRAIGEAARDDERWQAALWRALLAELSDSGAPPAHRFLVDARQI 207

Query: 220 EHLMKGT---KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
           +            + +       P    L+  ++   +  +            I      
Sbjct: 208 DADTIARIDWPESVSVFALPTMPPLHIALLRELSRWIDVRVYALNPCREFWFDIVTAAHA 267

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++ +               LA+       +   +  L   +        V +++      
Sbjct: 268 EALDAAGRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAALGDASRFVENRAPTWLAR 326

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                 D+              + +    +   +   +   L    D +           
Sbjct: 327 VQNAILDLQPEAALGEPPAERGIEVHVCHSLARQLEVLHDRLLGWFDADPSLQPSDVLVA 386

Query: 397 NLARRVKLEL----------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                    L              I   I+   P      + +L   L    +      +
Sbjct: 387 VADLAAAGPLIDAAFGTAGPGGARIPYRITGLPPSQANPVARVLLDWLALPERQVGAPEL 446

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              ++       +     +       L A    +    +    + V     T  +     
Sbjct: 447 VEWLRVDAVAARYGIDASALETVQTWLAAAGARRGLAPVAHDDAAVPTPRHTFSDALARL 506

Query: 507 HWQSRLSEEDKELAVLL---------VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                + +    +   L          + + +                   +   W++L 
Sbjct: 507 FLGYAMPDGAAPVGAWLPIEAATGSEAELLGRLARFTDDLDGFARRLADAHTPRGWSELF 566

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              L             L    +   L ++ + + E  +     A      +   +D   
Sbjct: 567 ADTLARFFDSGAAYADALAGVRD--ALDAMLAAMTEGAADEALPAAVVRAGLAAALDD-- 622

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                     +        R L +  + L G+++GV P     + F    +   L  +  
Sbjct: 623 PARGGVPWGGVTFSSLTSLRGLPYRIVCLLGMDDGVLPSLARADEFDLMAVLPKLGDRQR 682

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
                    D  +A   R LI        +   +    L   L+              + 
Sbjct: 683 RDDERNLFLDLLLAARDRLLIAYTGRSIRDNAPLPPAALVDELLDHLALVTAGPNAAPEA 742

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                R          +      P           + +  L+    +    R       P
Sbjct: 743 VDAARRAFIVEHPLQPFAAAYFRPDSTIASYDAERAALASLLASDASRDGPREQPFFAQP 802

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
              +  +    G           +            ++     +                
Sbjct: 803 LPAEPAEPVPFGE-----FERFWRHPARALLRARLGIVLADAQAELLDTEPFALDFAGSD 857

Query: 858 HLFHKISHSFLEHEEKIQSS 877
            L  ++    +E +E     
Sbjct: 858 ALAERVLPLLIESDEAAAHD 877


>gi|46198946|ref|YP_004613.1| ATP-dependent DNA helicase [Thermus thermophilus HB27]
 gi|46196570|gb|AAS80986.1| probable ATP-dependent DNA helicase [Thermus thermophilus HB27]
          Length = 857

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 108/949 (11%), Positives = 229/949 (24%), Gaps = 132/949 (13%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE----FIEITGKKSTILPIIKSLGD 83
            TLVE         + L  +     T++A +ELR+        +  ++  +   ++ +  
Sbjct: 14  HTLVEELLALVKGGVPLRRIAAVTFTRKAAEELRARARKGVEALAREEPGLGGAVREVHG 73

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            V       +  +     P  ++     +   +L     L +    LY         +  
Sbjct: 74  AVFGTIHGFMAEALRHAAPFLSLDPDFAVVDELLAEALFLEEARSLLYLLGEDPGLEAFL 133

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
             ++  + LA+    +E      E L  L  E    +   A + L               
Sbjct: 134 RRLYQGRTLAEAFRPLEGA----EGLVRLFAEALARYRRRAQEVLGP------------- 176

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                     L   +A   +      +++     + P   R    +     GA V+   D
Sbjct: 177 GDLEALALRLLRHPQALARVVERFPHVLVDEYQDTSPLQGRFFRALEEA--GARVVAVGD 234

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                 ++     +                  +  L +     R     L          
Sbjct: 235 PKQSIYLFRNARLEVFREALGRAEE-------VLVLDETRRHARRVAAFLNRFVALFPEG 287

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
             V  +     +     +       +   ++  +D+        + E             
Sbjct: 288 ERVAVRPTREAEGRVEVHWVEGGAGLEERRRFEADLLARRLLALKAEG------------ 335

Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF----- 438
               + A++   R     ++      G+   +  G      L    L   L         
Sbjct: 336 YAFGEMAVLVRSRASLPLLERAFRARGVPYVLRRGQSFFNRLEVRDLYHALRLALLEGPP 395

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
              +  ++   ++ P       E   +  +                +  L   V DR+A 
Sbjct: 396 GPEERRSLLAFLRSPFVGLNLGEVEEALLRED-------------PLPYLPQAVRDRVAW 442

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
            +        ++  +    E+ +  +    +     +             ++ +W +L  
Sbjct: 443 LRGLAGKRPLEALKALVRDEVFLSRLSPRARANLDALLLLAGLERFPDLEALLEWLRLRA 502

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              +   L E  +   L      K L                                  
Sbjct: 503 LDPEASELPEGGEGVALLTVHAAKGLEW-------------------------------- 530

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                    + +             +++G   E       A      R+ Q+        
Sbjct: 531 -------PVVVVYDVARGEPGPASPVLVGPEGEVAVAGTRAHRDLAQRLAQAQ------- 576

Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                    +   +  R ++     R       A    +  L     D         Q +
Sbjct: 577 -REEAVRLLYVALSRARDVLLVTGSRSGRESPWAQALERLGLGPESQDPLVARHPVPQGW 635

Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                      + P     +   P    P  +S S   +    P A         + +  
Sbjct: 636 RPPRPAPAARREGPPAPYAEHLLPPRPLPLVHSPSAHLKAEPKPLA---------EALEG 686

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
                     GTL H  +   +     +    + H       +  EKE L   +  + R 
Sbjct: 687 EAVSGFARALGTLVHYALARDLDPEDGRAMRALLHQEVAFPFAEGEKERLLAEVRALLR- 745

Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
            +  +    L   E+               + +   G    G  DR+  +      + DY
Sbjct: 746 RYRGMLGRELPALEERAEDYR------ELPLVLPLKGTVWHGVLDRVYRVGD-RWYLDDY 798

Query: 919 KTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
           KT     +E   +    QL+L     +         R  A L Y+R  +
Sbjct: 799 KT----DREVRPEAYRLQLALY----RRALLEAWGVRAEARLVYLRAGR 839


>gi|33865451|ref|NP_897010.1| exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. WH 8102]
 gi|33632620|emb|CAE07432.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp.
            WH 8102]
          Length = 1186

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 79/729 (10%), Positives = 184/729 (25%), Gaps = 54/729 (7%)

Query: 216  RAEAEHLMKG--TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
             AEA  L         +++     + P   RL+          ++L   D       +  
Sbjct: 378  DAEASWLEPLQQRYRAVMVDEFQDTDPVQWRLLQRSFG-GGSHLLLLVGDPKQAIYRFRG 436

Query: 274  ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
              +  T   +              +    L      +   G   + +   ++    +   
Sbjct: 437  -GDLDTYRRARGLVSRIDTLEDNYRTTPPLMAGLNALMAPGLPESRLEVPAVHARTARSA 495

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393
                + +    L   +   Q   +    IEA      A  +   L      +  +  ++ 
Sbjct: 496  AVLPEGQQPLQL---LQFEQDLPAGKTAIEAAVPPAVAEVVMQLLIEQPALSPDQLCILV 552

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
            +  + A  ++  L   G+   + A   +  +  + ++  LL+A+    D   +  L   P
Sbjct: 553  SRHDQAADLRRALAERGVPTRLVAQGDVLDSDAALMMQHLLDALAAPADDRRLRLLAASP 612

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L  +   +                  +       L +L             +        
Sbjct: 613  LVGWSADQL-----------------RCEAQDPQLDALAQRLRQAADQLPRLGLLGCLSG 655

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
              D E    L D     +  L               +           Q +         
Sbjct: 656  LLDAERTAGLSDEGRM-LGDLQQAARLVQEEMHRQGLDLAAAALWLRRQRLHPPSPLPPA 714

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                 +  ++  ++ +     G         ++    +     T     + ++  + +  
Sbjct: 715  REPHSDLAESAVAVVTVHRSKGLEFPLVICPYLWAGAKEARYVTGPLWRDGAAGGWRIAL 774

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK-YIGQAAHDFEMAN 692
                 L + T+      E V          ++R     L L            H     +
Sbjct: 775  NRDWGLGW-TVWQRSHAEQVAEAERLAYVAVTRARSQLLLLWARCAPQQSVLQHWLFEGD 833

Query: 693  GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
                     S R         RW  R      T       +R       +    +     
Sbjct: 834  ADTLRDLPLSHRPLKPEVGQQRW--RPPHRQETLAIGATPQRIDRSWGRSSYSAWIAAPA 891

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                 +     + +    + + +++     P A + R     D +    +       G  
Sbjct: 892  AEALLEQGRDQDPEAEEVTAAGLEEWPDRGPLADFPRGAAAGDCLHRMLEQLPFQCSGDW 951

Query: 812  FHNIITELIKKRINKNTPEINHL-MKQIID-------SHFEKENLPPHIDIIWR------ 857
             H I  EL +  ++ +  E     ++Q++D       +      L P   +         
Sbjct: 952  GHVIEQELQRSGLSLDWREAVEQGLQQVLDTPLGGPLAALPLSALTPDRRLHELSFDLPV 1011

Query: 858  --HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG---- 911
                   +  +F    E       + +++  + + + S G  LTG  D +    +     
Sbjct: 1012 RHARTDDLVEAFRLDPEAR---FGRDYIDQLSSLQVNSRGF-LTGSIDLVFSDAADPLQA 1067

Query: 912  FVDITDYKT 920
               + D+K+
Sbjct: 1068 RWWVADWKS 1076


>gi|229918202|ref|YP_002886848.1| recombination helicase AddA [Exiguobacterium sp. AT1b]
 gi|229469631|gb|ACQ71403.1| recombination helicase AddA [Exiguobacterium sp. AT1b]
          Length = 1205

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 87/859 (10%), Positives = 224/859 (26%), Gaps = 110/859 (12%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGST 236
            +        A +        ++ S    Y +A++R +        L K     +++    
Sbjct: 336  VRTVRAFGQAYEQAKRDRAFVDFSDLEHYALAILRQDGGPSDVAALYKERFAEVLVDEYQ 395

Query: 237  GSIPATARLMSTVA-NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
             +      +++ VA        +    D       +           ++        Q +
Sbjct: 396  DTNEIQETIINLVANEREEIGNLFMVGDIKQSIYRFRHAEPGLFIDKATRFR-----QAN 450

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
              K +D     R   + L  +++                + + +      E    + +  
Sbjct: 451  TGKRIDLSQNFRSRSEVLYGINDLFVQLMDEEVGEIAYDEAAQLVPGREYEPIPADPEFI 510

Query: 356  FSDVALIEADNEREEAISIAIALRMSLD------------------ENKKKSALITADRN 397
              D A  E   +  E  +IA  +   +                   E +    L+ + + 
Sbjct: 511  LVDGASRELSKQEVEGRAIATRILELVSGDEPFKVTDESTGQLRNCEYRDIVILVRSKKE 570

Query: 398  LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
               ++   LT++ I     +           ++ +LL  I      + +A  ++ P+ + 
Sbjct: 571  RVEQLMDILTQYNIPAYTDSDGGYFQATEIRMILALLKVIDNPLQDIPLAGALRSPMFR- 629

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
             F +  L+R +   E       K   D  D   +    +  + +          LSE  +
Sbjct: 630  -FDDGELARIRLESEDSFYEALKAKADDDDELGVKCGEMLDRLSRWRTYARNHSLSELIQ 688

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLTVTCLQNVCLDEHRKLPN 574
            +L      +      P    +        + +++      +     L+ +   +      
Sbjct: 689  QLFNDTGFYDFSGGLPGGKGRQENLKALYDRALAYERSGYRGLYRFLRVMDRLQDTGEDL 748

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK------IEKSSTL 628
                  G   + +    +     ++        +  +    + ++              +
Sbjct: 749  SEARSLGDEENVVRIMTVHKSKGLEFPVTIVAQLGKQFNKRDQMQRVIFHKQYGISLDAI 808

Query: 629  FILG------------------TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
             ++                   T+++  +    + L    E +    T   P        
Sbjct: 809  DVVTRTKSETFVKEMIRRDLDATMKAEEMRVLYVALTRAKEKLILVGTVGEPLKHLQQWL 868

Query: 671  DLN-----LKTAEKYIGQAAHDF-----EMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
             +      L +  +   +   D+              I +      +    ++ W+ R++
Sbjct: 869  QVGQSGDLLASEARREAKTYLDWIAPALLRLPSATSFIESFGFTVPSTFQESTSWIYRVI 928

Query: 721  VLGGTDFFDNLKK------RGQCYLDWTRKLDYTTKQPHYKRPK-----PFPPLEAQPRT 769
                      L++        Q +      +    +     +       P          
Sbjct: 929  GEADLAEIATLQEMMAQLHHVQRFEAIDFPIQNEEETIRAVKRALTYEYPARDAVRTAAK 988

Query: 770  YSFSEIKQLINDPYAVYARRILKL----DFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
             + +E+K+ +    A +   +  +          +      +RGT  H I    +     
Sbjct: 989  QTVTELKRAMQLEQAAFEDPVRPIDTPYREPKWRQVKQTGAERGTTLHLIFQ--LADPNQ 1046

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
                +IN    Q + S  E E     I  I    F       L    +  ++       +
Sbjct: 1047 PIVDQINQWEMQGMLSPVEAETARLAIPDIE-MFFQTEVGQALADALERGTAWR----EL 1101

Query: 886  PAKMAIESIGIH-----------LTGFADRIDLLKSGFVDITDYKTGDNPKKET------ 928
            P    + +  ++           + G  D +         + DYK+              
Sbjct: 1102 PFTYTVPAERVNPDGHFTDEHVLIQGIIDCLYFDGD-SYVLLDYKSDAVTHLSDSREDAH 1160

Query: 929  --AQKLIDPQLSLEAAALK 945
               ++    QL L   A++
Sbjct: 1161 ERLRERYAIQLQLYREAIE 1179


>gi|330505760|ref|YP_004382629.1| DNA-dependent helicase II [Pseudomonas mendocina NK-01]
 gi|328920046|gb|AEB60877.1| DNA-dependent helicase II [Pseudomonas mendocina NK-01]
          Length = 727

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 62/724 (8%), Positives = 157/724 (21%), Gaps = 161/724 (22%)

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL--YPESPLSLPISPANA 145
           +     L    +    + + R L LA         L   I  L     +     +S    
Sbjct: 6   ELLLASLNDAQVQAVAAPLGRQLVLAGAGSGKTRVLVHRIAFLIQAIGASPHSILSVTFT 65

Query: 146 IWLAKNLADIIDIIETE---EKKWEDLHALKNEKYGMWWL-------------------- 182
              A  +   I+ +             H L +      W                     
Sbjct: 66  NKAAAEMRHRIEQMLGHNPAGMWVGTFHGLAHRLLRAHWQEAGLAENFQILDSDDQQRLI 125

Query: 183 -LAADFLKIASKYWT----------------------------------------ERLVE 201
                 L +  + W                                              
Sbjct: 126 KRVIRELGLDEQRWPAKQAQWFINGQKDEGFRPQHIQAGGDLFLATMRGIYEAYEAACAR 185

Query: 202 LNASSPVGYQIALMRAEAEHLMKG-----TKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
                     +  +    +              I++     +       +  +A   +  
Sbjct: 186 TGVIDFSELLLRALDLWRDKPGLLEHYQRRFRHILVDEFQDTNAVQYAWLRLLAKGGDSL 245

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
           +V+   D       W     ++    SS+                               
Sbjct: 246 MVV--GDDDQSIYGWRGARIENIQQFSSDFPD--------------------------TQ 277

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
              +       +      +     N   L  ++         +AL  A NE +EA  +  
Sbjct: 278 VIRLEQNYRSTAGILKAANALIANNNGRLGKELWTDGGDGEPLALYAAFNEHDEARYVVE 337

Query: 377 ALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            +  +L ++     + A++      +R ++  L R  I   I  G             + 
Sbjct: 338 TIEDALRKDGLKRSEIAILYRSNAQSRVLEEALLREKIPYRIYGGQRFFERAEIKNAMAY 397

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L  +    +  A+  +V  P                 +    +   +      D+     
Sbjct: 398 LRLLDGRGNDAALERIVNVP--------------ARGIGEKTIETIREYARAHDVHMWEA 443

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
            R+                          L       +   +            + +   
Sbjct: 444 IRLMLANKA--------------------LPGRASGALAGFIELVEGLAEKVLAMPLHQM 483

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN----AIEWIDII 609
           T++ +     +              E+G+       +++      + +           +
Sbjct: 484 TQVVIEQSGLLA------YHEAEKGEKGQARVENLEELVSAARAFENDEDDELTPLQAFL 537

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
           T            E   ++ ++    ++ L F  + L G+ EG++P              
Sbjct: 538 THASLEAGDTQAAENEDSIQLMTLHSAKGLEFPLVFLVGMEEGLFP-------------- 583

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
             ++L+   +   +    +       + L+ + +       +     + R +        
Sbjct: 584 HKMSLEEPGRLEEERRLAYVGITRAMQKLVISYAETRRLYGSETYNKVSRFVREIPAPLI 643

Query: 729 DNLK 732
             ++
Sbjct: 644 QEVR 647


>gi|319950042|ref|ZP_08024010.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
 gi|319436292|gb|EFV91444.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
          Length = 511

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/450 (12%), Positives = 119/450 (26%), Gaps = 55/450 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEIT------------GKKSTILPIIKSLGDVV--EEKFT 90
             +     T++A Q+L                    G    I   I++    +     F 
Sbjct: 64  GEILGLTFTRKAAQQLSRRIRRRLDALARSALCTGPGADPAIAEAIRTEDPQISTYHAFA 123

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             LL +Y L  PV    RLL       +  + +      L   S         + + LA 
Sbjct: 124 GTLLGTYGLLVPVEPDSRLLTPTAAFQLAHDVVSRWESPLTTGSNPGTV--TRDVLALAG 181

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA---------------ADFLKIASKYW 195
            L+D +   +      + +  L           A                + L       
Sbjct: 182 QLSDHLVSTDDLRAHPDLITTLIATLPPGPRQKATPTAWLGRTAEIQGHREELADLVDAV 241

Query: 196 TERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTV- 249
             R+   +A               +H       +     +++     +  +   L+S++ 
Sbjct: 242 AARMRAESALDHASQMALAATVARDHPEVGLAERRAFRVVLLDEYQDTGHSQRVLLSSLF 301

Query: 250 -ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
            A       V    D       W   +  + +    +                    +  
Sbjct: 302 GAGADPAPAVTAVGDPMQSIYGWRGASASNLDRFREDFPLP--------------GGRPS 347

Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
            ++ L            + ++   P                P  ++    VAL++   + 
Sbjct: 348 HLRELTTSWRNPPEVLTLANRITAPLRDRPGSVPVPELRARPGAERADLRVALLDTAEDE 407

Query: 369 EE--AISIAIALRMSLDENKKK-SALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            E  A ++A   R +    +   +A++      +  +   L   G+ ++I     L    
Sbjct: 408 REWLADTLADRYRAAERAGRVPTAAVLVRRNGDSAAIAEALEARGLPVEIVGVGGLLDVP 467

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
             + + +LL  + +     A+  L+     
Sbjct: 468 EVADVVALLTVVARPGAGPALLRLLSGSRF 497


>gi|194337239|ref|YP_002019033.1| UvrD/REP helicase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309716|gb|ACF44416.1| UvrD/REP helicase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 739

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 71/633 (11%), Positives = 161/633 (25%), Gaps = 109/633 (17%)

Query: 34  FRYDPLNPLLLASVTIYVPTKRAIQELRSE---FIEITGKKSTILPIIKSLGDVVEEKFT 90
            R + ++P    ++     T +A  E+R      +     +      I +   +      
Sbjct: 45  IRNEGVSPQ---NILALTFTNKAAGEMRHRVDTLLHQGSSRGLW---IGTFHSIFARILR 98

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             + L            +   +             +I+    E  +S+   P N +    
Sbjct: 99  NSIDLI--------GYDKNFSIFD-----SEDSKSLIRQSMAELNISVESVPVNTVQ--- 142

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
               +I   +       + H         +    A       + +  +L E NA      
Sbjct: 143 ---GLISRAKNSFILPSEFH----RNASDYNQQKASQ---IYELYARKLKENNALDFDDL 192

Query: 211 Q---IALMRAEAEHLMKGTK--GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
               + L  A  E L +  +    I+I     +  A   +   +        +    D  
Sbjct: 193 LIKPLELFNAHPEVLQELQETFRYIMIDEYQDTNRAQYLVAKMLGAKHRN--IFVVGDDA 250

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                W      +      +     H   +                        +     
Sbjct: 251 QSIYSWRGADISNILNFQDDY----HDALTFK----------------------LVENYR 284

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                    +     N   ++ ++ + +     + LIEA NER EA  +   +R    + 
Sbjct: 285 STGNILKAANNVISCNLRQIKKELISHRNEGEPLTLIEAYNERNEAERVGEQIRNLRLKQ 344

Query: 386 K---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               +  A+       +R ++  + +  I   I   +            + L  I    D
Sbjct: 345 GFEFRSFAVFYRTNAQSRVLEDVMRQHKIPYKIFGSVSFYKRKEIKDAVAYLRFILNDRD 404

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             ++  ++  P  K G       R       ++L            +             
Sbjct: 405 GESLLRIINFPPRKIGDVSIAKLREFAEDRQISLYEAILHSGEGGFQP------------ 452

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                               LV+ +      + T +           +++   LT   L 
Sbjct: 453 -------------------RLVNALSSFSAVIETLRKVAVDGTVYEVLTELFTLTSIPLL 493

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
               +    L      +E  +++  FS        +        D +  +          
Sbjct: 494 LQTENTPESLVRYENLQELLSMARDFSDHNPDTGSLG-------DFLENISLASDYDETQ 546

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
           E  + + ++    ++ L F  + + GL E ++P
Sbjct: 547 ESDNYVSLMTVHAAKGLEFPVVFITGLEERLFP 579


>gi|320354828|ref|YP_004196167.1| exodeoxyribonuclease V subunit beta [Desulfobulbus propionicus DSM
            2032]
 gi|320123330|gb|ADW18876.1| exodeoxyribonuclease V, beta subunit [Desulfobulbus propionicus DSM
            2032]
          Length = 1172

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 83/887 (9%), Positives = 206/887 (23%), Gaps = 121/887 (13%)

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
                         F         E L +  +   +  ++A                 ++ 
Sbjct: 332  ERSRRKRAQGWLAF-DDLLTRLAEALEQPGSGGQLADRVAA-----------RYPAALVD 379

Query: 234  GSTGSIPATARLMSTVANH--PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
                + P   ++ S +     P G  +    D       +      +       T     
Sbjct: 380  EFQDTDPVQYQVFSRIYRQERPAGTALFLIGDPKQAIYSFRGADIFTYIRARRETVPENR 439

Query: 292  PQ--------YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                       ++   ++ L   R D        +    ++   +++       +     
Sbjct: 440  YTMGTNYRSTPAMVGAVNALFGCRRDAFVFTEDIDFQPVQAATEARAEPLLLDGEPAPPL 499

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-------------KKSA 390
            I         K      + +    R      +  +   LD+ +                A
Sbjct: 500  IGLLLDSERLKSTRSTTISKDKALRAAVTVCSNTIVGLLDQARLGQATIGGQALQTSDIA 559

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            ++      A  ++  L R G+N   S+   +  +  +  L  +L A+    D   I T +
Sbjct: 560  ILVRSHREAEAMQAGLRRRGVNSLASSQASVFASEEARQLALVLAALVDPGDPARIRTSL 619

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
               L      + +                +     +            Q     +    +
Sbjct: 620  ATDLFGCNAGQLHAL----------NSDERAWEIRLADVHRYRQLWQEQGIMPMLQQLLA 669

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            + +   +  A +  +  L     L        +  G   ++   +     + +       
Sbjct: 670  QEAVTRRLSARVGGERSLTNFLHLAELLQQSPA--GRHGMAALLRWFRQQIDHPDNTAAD 727

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
            +L  L  +E+   + ++          +          +       +   +     TL +
Sbjct: 728  QLIRLENDEQLIRIVTIHRAKGLEFPVVFLPFPWAGRGLDAD-QPLSFHERDSLGLTLDL 786

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                E      +   L      ++   T               L+         A+    
Sbjct: 787  GTGQEEHQRWAEQEQLAEELRLLYVAVTRAKSCCLFCWGRVNGLE-----RSGLAYLLHR 841

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            A             E          L+      G   F +            R       
Sbjct: 842  ARCPESDAQLCQELEQLGGAQPLVGLRPFPERFGHHRFQSDIDLPMPQPRLFRGRVVPGW 901

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                          ++  + S + ++   ++P    +           F +       GT
Sbjct: 902  TI---------TSYSRLASGSDAALETDRDEPAMAPSEEAASGCSPFTFPRG---AASGT 949

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
              H ++  L      +   ++   + +              I+  W+    +   + L  
Sbjct: 950  CLHTLLQRLECNHPVEGQQQLVAEVLEQG-----------GIEARWQATAVRWLDAVLAV 998

Query: 871  E------------EKIQSSIEKIF-VNI----PAKMAIESIGIH------------LTGF 901
            E                + +  +F +           ++  G+             + GF
Sbjct: 999  ELPGACSLNQVPVRDRINELGFLFPLEKVDLRRFNRLLDGAGLRPLTTPVTSLQGLMKGF 1058

Query: 902  ADRIDLLKSGFVDITDYKTG---------DNPKKET-AQKL-IDPQLSLEAAALKAGSFS 950
             D +   + G   I DYK+                          Q  +   AL     +
Sbjct: 1059 IDLVFRFQ-GRYWIVDYKSNHLGPSLAHYTPEALAECMDSHQYHLQALVYTLALHRFLDA 1117

Query: 951  QIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
            +I      + V  ++Y+ L+         +    +  D    ++L +
Sbjct: 1118 RIADYRYEQHVGGVYYLFLRAMDPAHPPGSGVHAFRPDAALIEALDD 1164


>gi|158316649|ref|YP_001509157.1| hypothetical protein Franean1_4886 [Frankia sp. EAN1pec]
 gi|158112054|gb|ABW14251.1| conserved hypothetical protein [Frankia sp. EAN1pec]
          Length = 334

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 24/239 (10%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
           + S S     +N P     R + +L          +   RGT+ H ++  L        T
Sbjct: 56  SLSPSRAADFVNCPLRYRFRVVDRLPE-----APSEAATRGTVVHGVLERLFDLPARSRT 110

Query: 829 PEINHLMKQIIDS-------HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                 + + + +                     W      +   +   E+  +  +   
Sbjct: 111 QPAATELVEPVWADLLARDPALGGLFDDDGALRSWLDSARDLLAGYFTLEDPTR--LAPA 168

Query: 882 FVNIPAKMAIESIGIHLTGFADRID--LLKSGF-VDITDYKTGDNPKKETAQKLIDPQLS 938
              +  +  + S G+ L G+ DR+D      G  + + DYKTG +P     +     Q+ 
Sbjct: 169 ARELYVEHVLAS-GLRLRGYVDRLDSAETPQGTALRVIDYKTGRSPGPAF-EGAAMFQMR 226

Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
             A  L               L    L  +  +     + +  + +   E     +   
Sbjct: 227 FYALVLWRS-----RGVIPRELRLYYLSDRTWLRATPEESELRATERRIEALWAAIARA 280


>gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300072981|gb|ADJ62380.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae SmR1]
          Length = 1158

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 77/788 (9%), Positives = 191/788 (24%), Gaps = 93/788 (11%)

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-- 257
             +L   +    +     A  +  +      I++     + P    ++    +   G    
Sbjct: 400  ADLEWQAYRLLRNEASAAYLQTRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQ 459

Query: 258  --VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD-------------- 301
              V    D       +     +                    +                 
Sbjct: 460  PSVFVVGDPKQSIYRFRRAEPRVFVAAREMLRAQGAAILRANQTRRNATAVVDVLNRSFV 519

Query: 302  ---------------FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                                        +   E    +   + S  P    ++       
Sbjct: 520  MGGNPLFAQQTTLGLAGGEVWRLPLARPDDGAENVSSADTDAASAAPEGEPEVIPWRNPL 579

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLDENKKKSALITADRNLARRVK 403
                  +     +    A  +        + +     +         L+   R      +
Sbjct: 580  TTPRGEEDDARRLLEGLALAQALLKAYREVPVVEGKGARSMRWGDIMLLVRKRTHLAAYE 639

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L   GI         L  +L  + L +LL  +   ND  A+A ++K P+      +  
Sbjct: 640  SALRAAGIPFISDKRGGLLESLEIADLIALLTFLITPNDTRALAHVLKSPIISATDDDLV 699

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                + A         +  +    L+++  +  A+      V   Q  L          L
Sbjct: 700  QIARRAAQ-------AEGGHWWRQLQAMQQEGAASAALVRAVTLLQRWLLAAPHLPVHDL 752

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
            +D IL     +  Y  + +    + ++ +        L     D  R      F +  + 
Sbjct: 753  LDMILHQGELVARYAQHASPLTRSQTLGNIAAFVELSLNM---DAGRYPSLPKFIDALRV 809

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            L           + + A+      +      G         +  + IL    S  +  + 
Sbjct: 810  LQRSAGGDAPDEASVDASGDAVRILTVHSAKGLE-------APVVAILDANHSDSVEDNL 862

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
             IL    +                  S  +    E+   +   D+ +     ++  TR+ 
Sbjct: 863  GILCAWPQDEDAPTHFSAFGRRSERGSARDPLFEEEETLRTQEDWNLL----YVAVTRAK 918

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
            +   +  +A         +    ++  L        + + +  +  +    +        
Sbjct: 919  QLLLVSGVAGTRGADAGGVVQGSWYQRLFASDAPVREISEEAVHGAEAAAIEERFSLALF 978

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
            + +      S      +DP        +            D  D G   H ++  L    
Sbjct: 979  DPR--PLPMSLFGAPADDPQDA-----VPALTADGALVSTDAIDEGVALHALLERLTHGH 1031

Query: 824  INKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKI----SHSFLEHEEKIQSS 877
                      ++ + +   +   +       +++ +    +      H +  +E      
Sbjct: 1032 AWPLHVPSASVLVRWLGISAEMAQVVHAQAREVLAQPQLERFFNPALHRWARNEM----- 1086

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937
                      ++   +  + L    DR+ +     + + DYK       ++ +     QL
Sbjct: 1087 ----------EIVTPNGLMRL----DRVVMFDD-ELWVIDYK---RRLLDSERADYAAQL 1128

Query: 938  SLEAAALK 945
                +AL 
Sbjct: 1129 GRYRSALM 1136


>gi|311063850|ref|YP_003970575.1| ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
 gi|310866169|gb|ADP35538.1| ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
          Length = 1400

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 95/972 (9%), Positives = 239/972 (24%), Gaps = 91/972 (9%)

Query: 57   IQELRSEFIE---ITGKKSTILPIIKSL----GDVVEEKFTADLLLSYNLNPPVSNIQRL 109
             +  +             ++  P +  L      + +     +      L    S +   
Sbjct: 468  ARFAKQAIARYRKDAATAASDTPHVAVLFRGKTHMAQFAQELERAGLTTLVVGYSALLER 527

Query: 110  LELARLILIWRNKL--PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
             E+  LI +        D    +   +     +   +   LA    D+ +          
Sbjct: 528  PEVQDLIALLHAAADHTDSASLMRLLATPRFGLGSESLTRLAGMAEDLDNQCRYRALVES 587

Query: 168  DLHALKNEKYGMWWLLAADFLKIASKYWTERL--VELNASSPVGYQIALMRAEAEHLMKG 225
             +    ++              I S      L       S    +    ++A  +     
Sbjct: 588  GIIGSGSDGARAD---DGHDEAIVSTSIDSGLVSEADGGSDIATFADPQVKAIVKQYRDR 644

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
                + +             M    + P+      G D      I             +N
Sbjct: 645  VPHAVFLID-----------MMMRDDLPSLLSRRGGFDETTSRRIIQAGEVLQRVHAVTN 693

Query: 286  TTYSTHPQYSLAKL-LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                     ++  L LD   I  + VK      N    RS + S + L    +      +
Sbjct: 694  HPLKEVIDAAVRALNLDIDTIVAQAVKNPSQPVNPTQARSPLQSVAALVDTYTQEIVEGV 753

Query: 345  LENKIP--NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402
                    +       +    A      A  + + +  +        A+++    +    
Sbjct: 754  NPTLRGFMSWVDSLGQIEEGTAAVPDTPADVVLMTIHQAKGLEWDAVAVVSMQSGVFPSN 813

Query: 403  KLELTRFGINIDISAGIPLSTTLH--SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            +  L           G   S T     + + S  +    +   + +   +         P
Sbjct: 814  QGGLHVELDAEHPGGGAGESWTPPEYKATVRSWADDPAAVPAPVRVDAGILPRFPHDANP 873

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
            +        AL+ V +  ++   D+         R     ++  V    S    +++E  
Sbjct: 874  DDAPVETLRALDDVEVIDDEFYGDL---------RSKDIGDDMDVADPSSWYLTQEEEYG 924

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
              L+      +  +   +  K++       S   +     L           P++++ E 
Sbjct: 925  RRLLADER-RLAYVALTRAKKDALLTYSQYSILDRDPSQYLNRPGKRPSASKPSVFWTEM 983

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
              +L      +    S     +  + +    + D          +S      +L+   ++
Sbjct: 984  QDSLCHESGLVSACKSG----SAGYSENADAIADSSPDLAVAGAASGASAHPSLDQLGVD 1039

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
                   G +   + ++  +  + + + + +            +        G       
Sbjct: 1040 RPQGFFVGDHATEYERDVVEEAWNAPLEEREQG-GGPTWPAKLSEETLSKLTGGMSGDSV 1098

Query: 701  RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
                + +     +R L     L    F    ++  +        L    +Q         
Sbjct: 1099 LVTDDPDSLLARARMLVEDPDLMPWSFGRGEREIDRYVRRQAEHLLEHGRQNVTALQARA 1158

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
              +  +     +  + + I                    +      + GTLFH    + I
Sbjct: 1159 GHMTQREERGYWRGLIRPI-------------------PRVASPAAEAGTLFHAWAEQFI 1199

Query: 821  KKRINKNTPEINHL----------------MKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
                +  + + + +                 + +       +     +         +  
Sbjct: 1200 NAYGDGQSIDADGIGAYDSSSIETGTAGTCREPVTRESLLHDLSELEMKSDTLTAKERQL 1259

Query: 865  HSFLEHEEKI-QSSIEKIFVNIPAKMAIE-SIGIHLTGFADRIDL------LKSGFVDIT 916
              +     +   S     +      ++I     + + G  D +          +    I 
Sbjct: 1260 TVWQRRLAESTWSERRPAWAERQIVVSIPQLGDVIVNGKLDAVFHGGLDANDPTKQYTIV 1319

Query: 917  DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976
            D+KTG  P+K    +    QL      L       +   ++    Y  L +  +     +
Sbjct: 1320 DWKTGRKPRKPQDIEHKLVQLDWYRLLLSY--IEHVPLDRIDATLYY-LSEPDEGARELH 1376

Query: 977  DKKKYSADELSE 988
             + K   + L+E
Sbjct: 1377 ARAKTEQEILAE 1388



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/308 (10%), Positives = 72/308 (23%), Gaps = 36/308 (11%)

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
           +   + +T  L++    +     + L                       S         +
Sbjct: 294 ERYRRRYTHVLLDEYQDTSTTQAMLLATLFHPQSADADADR--------SSSRWREAARS 345

Query: 249 VANHPNGAIVL------PGLDCHIPTAIWNTITEKSTNITSSNTTYS-THPQYSLAKLLD 301
                   + L         D       W   +  +  +   +         Y L+    
Sbjct: 346 AGGWSKDGVGLSRSAVNAVGDPFQSIYAWRGASPGAFRMFQKDFGMPADAKPYPLSVTRR 405

Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
              I       L         R+            S +     + N           + +
Sbjct: 406 NTCIVLRAANNLTEPLRIPPRRA-----------GSSLMREVDVANLSAMDNAAEGTIGV 454

Query: 362 IEADNEREEAISIAIALRMSLDENKKKS----------ALITADRNLARRVKLELTRFGI 411
           +      +EA ++A   + ++   +K +          A++   +    +   EL R G+
Sbjct: 455 LGFATFGQEADAVARFAKQAIARYRKDAATAASDTPHVAVLFRGKTHMAQFAQELERAGL 514

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              +     L        L +LL+A     D  ++  L+  P    G             
Sbjct: 515 TTLVVGYSALLERPEVQDLIALLHAAADHTDSASLMRLLATPRFGLGSESLTRLAGMAED 574

Query: 472 ELVALRGN 479
                R  
Sbjct: 575 LDNQCRYR 582


>gi|255321197|ref|ZP_05362363.1| superfamily I DNA and RNA helicase [Acinetobacter radioresistens
           SK82]
 gi|262380117|ref|ZP_06073272.1| ATP-dependent DNA helicase PcrA [Acinetobacter radioresistens
           SH164]
 gi|255301751|gb|EET81002.1| superfamily I DNA and RNA helicase [Acinetobacter radioresistens
           SK82]
 gi|262298311|gb|EEY86225.1| ATP-dependent DNA helicase PcrA [Acinetobacter radioresistens
           SH164]
          Length = 659

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/410 (11%), Positives = 109/410 (26%), Gaps = 56/410 (13%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            + I   T+RA  E+ +   +  G K+  L    +           +          + +
Sbjct: 55  QIQILTFTRRAASEIVTRVEQHLGAKARGL-RASTFHTFCMYLLRRNSQAFGLGQFSIID 113

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
               + + RL+           +    ES L       +    A+N  + +     ++  
Sbjct: 114 RDDQILMFRLL-----------RGKDKESVLPKAAQLCDIYSYARNTRNKLSEAIAQQW- 161

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTER--LVELNASSPVGYQIALMRAEAEHLM 223
            + L               A+ ++   +   ER  L   +  + V   +    A    + 
Sbjct: 162 PDAL---------EHKAQIAELMQAYERRKRERNFLDYDDILAIVAVHLQHSEALVNWVT 212

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
           +     +++     + P    L+  +        +    D       +     ++ +   
Sbjct: 213 RLC-SVLLVDEMQDTNPLQWALLQPLVGK---IKLFCVGDDAQSIYGFRGADFENIHHFK 268

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                +                +  D+       + ++    +I+               
Sbjct: 269 ERVPDAEVLNLDFNY---RSTQEILDLSNWLLDKSPLHYDKHLIAARGRGIKP------- 318

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALITADRNLARR 401
                            L    NE EEA  IA  L  R        +  ++      AR 
Sbjct: 319 ----------------QLHLFSNEFEEANWIAQDLIKRQYTGAQWYEHMILVRSSFTARH 362

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           ++  L    I      G+ L  + H   + S+L  +    D +A    + 
Sbjct: 363 LEGALINANIPYKFVGGVKLLESAHVKDMLSMLRVVANPQDDIAWMRFLT 412


>gi|121605093|ref|YP_982422.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120594062|gb|ABM37501.1| DNA helicase/exodeoxyribonuclease V, subunit A [Polaromonas
            naphthalenivorans CJ2]
          Length = 1103

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 74/797 (9%), Positives = 179/797 (22%), Gaps = 99/797 (12%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALM--------RAEAEHLMKGTKGPII 231
                 A   ++    + +   E         + A +            +  +      ++
Sbjct: 354  HQQRMARLSRLLIAQYNQLKREHGWVDMNDVERAALVMLGDPVLAGWVQERLDARIKHLM 413

Query: 232  IAGSTGSIPATARLMSTVANHPNGA----IVLPGLDCHIPTAIWNTITE--------KST 279
            I     + P   + +S   +   GA     V    D       +                
Sbjct: 414  IDEFQDTNPLQWQALSAWLSGYGGAGAAPSVFLVGDPKQSIYRFRRAEPQVFRAAQAFVV 473

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                 +     H + +   ++D ++      + +          +            +  
Sbjct: 474  EGLGGDLLSCDHTRRNALAVIDTVNAVMGHARTVDGYDGFREHTTDSAKAGATGCLPAIS 533

Query: 340  RNTDILENKIPNIQKCFSDVA----LIEADNEREEAISIAIALRMSLDE--NKKKSALIT 393
            R  +  +            ++    L E      EA   A  +   L          +++
Sbjct: 534  RQREGADADTSPEAGWRDSLSTPRELPEETLRTLEARQAAAWISRQLATGLKPSDVMVLS 593

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              R     ++  L    I   I     L        + +LL+ +      +++A  ++ P
Sbjct: 594  RKRAGLLPLQEALRALHIAAQIGEKTDLIDCCEVLDVVALLDVLVSPQHDLSLARALRSP 653

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L                   +                L    +   + +  VP       
Sbjct: 654  LFGLLDASLVQLALLQKELKLPWSEL-----------LQKTELLAPELHALVPFLARWKG 702

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
              D       +  +      L  +     +      +++   L    L            
Sbjct: 703  WLDSLPPHDALQKMYDDGDVLARFAAAAPAAQRPAVLANLRALLGVALGRDGGRYATPYG 762

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
             +   + G  L+ +          +  +  + ++    L+      P+   S  + +   
Sbjct: 763  LIRALKAGGLLAPVAVN-DAAVRLLTIHGAKGLEAEAVLLLDTDTAPRNADSMGVLV--- 818

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
                         G   E                 Q  L  + A +   +    +     
Sbjct: 819  ----------DWPGEATEPRKFVFLVSEARPPACAQEALAAEQAARKREELNALYVAMTR 868

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
             RH +   S+  +        W QRL                    D   +         
Sbjct: 869  ARHTLAISSIEPHRA--TIDSWWQRLQGQVPPLDAPAPPDSLGEKADGAGQ--------- 917

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                            +     +         +     +        +DP     G   H
Sbjct: 918  -----------EGAAGFPAPAAEVFYLPELPAFEPPAPEPAAEGSVAEDPANARVGKAMH 966

Query: 814  NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
             ++         +++ E    + +          L P        L   I          
Sbjct: 967  RLLE-----WGGRSSAEHVGAVAREFR-------LNPAQAQEACALAQCILKGEGAWAWS 1014

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS----GFVDITDYKTGDNPKKETA 929
             ++            +  + + + L    DR+   K     G   + DYK+     +   
Sbjct: 1015 NEAVAWHGD---EIDLVYQGLPLRL----DRLVRRKDAGFEGQWWVLDYKS---APEPEL 1064

Query: 930  QKLIDPQLSLEAAALKA 946
            Q  +  ++ +  AA++ 
Sbjct: 1065 QPALITKMRIYRAAVQR 1081


>gi|126433515|ref|YP_001069206.1| exodeoxyribonuclease V, beta subunit [Mycobacterium sp. JLS]
 gi|126233315|gb|ABN96715.1| exodeoxyribonuclease V, beta subunit [Mycobacterium sp. JLS]
          Length = 1115

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 82/807 (10%), Positives = 185/807 (22%), Gaps = 47/807 (5%)

Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
           +L+    +   +I+ DLY          P      A  LA      E       +L    
Sbjct: 155 QLVESLDDLTAEIVDDLYLAHFGQQRDDPVMTRGQALELAH-----EVVGNAGTELRPQN 209

Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE------AEHLMKGTK 227
                   +   +F K        R   L           L  A       A   M    
Sbjct: 210 PPPGTESAVRV-EFAKAVCAELERRKRRLGILHYDDLLSRLANALTGEDSPARTRMHRRW 268

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
             +++     + P   +++         + ++   D       +               +
Sbjct: 269 SIVMVDEFQDTDPVQWQVLDRA--FTGRSTLILIGDPKQAIYAFRGGD---IATYLHAAS 323

Query: 288 YSTHPQ------YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            + H Q       S   L+D L +   D +            +            +D   
Sbjct: 324 TAGHRQTLGTNWRSDGDLVDRLQVVLRDAELGDPEIVVRPVEARHKGHRLAGAPHNDPFR 383

Query: 342 TDILENKIPNIQ-KCFSDVALIEADNEREEAISIAIALRMSLDENKK-----KSALITAD 395
             I+      I+      +  + A    + A  I   L        K       A+I   
Sbjct: 384 LRIVSRDTFGIRGDRTIAIDRLRAHISADLAADIGRLLASGATFCDKKIEAKDIAVIVEK 443

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              AR     L+  GI    +    +  +        LL A  + +    +         
Sbjct: 444 HKDARACFDALSVAGIPAVYTGDSDVFNSPAGDDWLCLLEAFDQPHRPGLVRAAATT--M 501

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
            FG   + L+   + L        +   D    + +     A             R  E 
Sbjct: 502 FFGRTAEELAARGDRLTDEIADRLREWADHARERGVAAIFEAANMTGMGRRVLSWRDGER 561

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                  L   + +       +           +  +         + +  D        
Sbjct: 562 HMTDLAHLTQVLHET--AHREHFNLPALRDWLRTQREERSGATERNRRLDNDAAAVQIMT 619

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
            +  +G     ++       +    + + + D  TR +            + +  LG  E
Sbjct: 620 VWVSKGLQYPVVYLPFAFNRNIQTRDCVLFHDDRTRCL--HIGGDDSPDHAQVERLGRKE 677

Query: 636 SRLLNFDT--LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
           +   +     + L      V           +  +   L  +   +       D    + 
Sbjct: 678 AAGDDVRLTYVALTRAQSQVVAWWAPSWDEPNGGLSRLLRGRAPGETTVPDRCDPPKVDD 737

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
                  R+  +   P +    +         +   +L  R             T+    
Sbjct: 738 ADARTALRAWADLGGPVLEDSEIAAPAAPEPREHPTDLDVRHFH-RGIDTAWRRTSYSGL 796

Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
            +  +  P +          E+     +   V               + P     G+L H
Sbjct: 797 LRAAEGSPAVAGVTSEPEVGELDDEAAE-VPVSESHTDVDPVPSPMAELPTGAKFGSLVH 855

Query: 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW---RHLFHKISHSFLEH 870
            ++        +    ++   ++  I  H     +    + +      +        + +
Sbjct: 856 AVLE-----HADPFAADLKAELEHRIREHMVWWPVDVEAEALADALLPMHDTPLGPLVPN 910

Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIH 897
               Q  +      +  +  +    + 
Sbjct: 911 VTLRQIGLRDRLRELDFEFPLAGGDVR 937


>gi|288933724|ref|YP_003437783.1| exodeoxyribonuclease V subunit beta [Klebsiella variicola At-22]
 gi|288888453|gb|ADC56771.1| exodeoxyribonuclease V, beta subunit [Klebsiella variicola At-22]
          Length = 1178

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 102/864 (11%), Positives = 210/864 (24%), Gaps = 128/864 (14%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMR----AEAEHLMKGTKGPIIIAGSTG 237
              A   ++ A      R  EL     +      +R          ++      +I     
Sbjct: 329  ARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRGDSGEALASAIRQRFPVAMIDEFQD 388

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            + P   R+   +        +L   D       +      +      +            
Sbjct: 389  TDPQQYRIFRRIWRQQPETALLLIGDPKQAIYAFRGADIFTYMKARGDVAAHYTLD---T 445

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                   +     +      N    R +             +R T    +          
Sbjct: 446  NWRSSPGMVGSVNRLFSLSDNPFMFREIPFLPVKAAAKNQGLRFTVDAADVPAMNVWLMP 505

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
               +   D +   A   A  +R  L   ++  AL+            ++T    N   +A
Sbjct: 506  GDTVGSGDYQTFMAQLCATQIRDWLSAGQQGRALLWRGETSRPVQASDITVLVRNRLEAA 565

Query: 418  --GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                 L T    S+  S  +++F+  +   +  L++  LA         + A +      
Sbjct: 566  QVREALQTLGIPSVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSM----- 620

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                      +D+++L  D  A          ++    +      +  +         L+
Sbjct: 621  -----FGLTALDIENLNQDEQAWDALVEEFSEYRQIWRQRGVMPMLRALMTARHIAENLL 675

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
              +  +      L IS+  +   + L++                    L    ++ I   
Sbjct: 676  ATRGGERRLTDILHISELLQEAASQLESE-----------------HALVRWLAQHIAEP 718

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                A+    ++                    + I+   +S+ L +  + L  +      
Sbjct: 719  DSNAASQQMRLE---------------SDKHLVQIVTIHKSKGLEYPLVWLPFIARFRKQ 763

Query: 656  KNTAKNPFLSRVMQSDLN-------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
                 +   +     DL        L  AE+        +                 ++ 
Sbjct: 764  DQAFYHDRETFAAVLDLGQDEASLELAEAERLAEDLRLLYVALTRAVWHCSLGVAPLSSR 823

Query: 709  PTIASRW----LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
             +  S +    L RLL  G       L  R   +      L    +        P     
Sbjct: 824  KSGNSDFHLSALGRLLQAGEAMDAAGLAARLADFCHGDIALQRPGELDLTPWQAP----A 879

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH-----FKKDPDRTDRGTLFHNIITEL 819
            A     S  E+++ I D + V +   L+            + D D    G +        
Sbjct: 880  ATIPPLSARELQRRIADDWRVTSYSGLQQHGFSGGQDLLPRLDVDAAGVGEVVEEPQLTP 939

Query: 820  IKKRINKNTPEINHLMKQIID-------SHFEKENLPPHIDIIWRHLFHKISHSFL---- 868
             +           H + + +D           ++      D  W  +        L    
Sbjct: 940  HQFPRGAAPGTFLHSLFEELDFTQPVPDGWMAEKLQLSGFDAQWAPVLTDWLGGVLKTRL 999

Query: 869  --EHEEKIQSSIEKIFVNIPAKMAI-----------------------ESIGIH-----L 898
                    Q +     V +   + I                         +        L
Sbjct: 1000 PGADIALNQLAARDKQVEMAFYLPIAQLLTAERLDALIRQYDPLSADTPPLDFRQVRGML 1059

Query: 899  TGFADRIDLLKSGFVDITDYKTG---------DNPKKETAQKL--IDPQLSLEAAALKAG 947
             GF D +   + G   + DYK+            P  E A +    D Q  L + AL   
Sbjct: 1060 KGFIDLVFRHE-GRYYLLDYKSNWLGEDREAYTRPAMEQAMRAHRYDLQYQLYSLALHRY 1118

Query: 948  SFSQID----CRKVANLFYIRLKQ 967
               ++      R    + Y+ L+ 
Sbjct: 1119 LRHRLADYDYDRHFGGVIYLFLRG 1142


>gi|304569684|ref|YP_009677.2| ATP-dependent DNA helicase UvrD [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|311232732|gb|ADP85586.1| UvrD/REP helicase [Desulfovibrio vulgaris RCH1]
          Length = 1127

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 67/594 (11%), Positives = 141/594 (23%), Gaps = 121/594 (20%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +   R ++   +   + E              +     T+RA  E+        G  +
Sbjct: 564  PGTGKTRTLV-GRVQRLVAEGVAAR--------RIVAVTFTRRAATEMDERLSVTLGDGA 614

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
              LP   +L  +  E +           PPV   +   E AR +    N           
Sbjct: 615  -PLPRTDTLHALAFEFWHRSSA-----QPPVLLSE---EAARRVFAEANPDATAQTLREA 665

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
               L++         LA  LA ++D    ++  W                          
Sbjct: 666  WDELAVCRERMQVCSLA--LAPLLDRYVQQKAAWN-----------------LADYTDLL 706

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            ++W                   +      L       +++       P    L+  +   
Sbjct: 707  EFW-------------------LEQIHNGLYVPPWRHVLVDEIQDLSPLQLALVRALL-P 746

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
            P G       D       +                                D+K    + 
Sbjct: 747  PGGEGFFGIGDPDQSIYGFRGA---------------------------HGDVKGALDEA 779

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
               +S  +  R+   S + +      +        ++  ++   +D+ L EA +   EA 
Sbjct: 780  WPGLS-VVTLRANYRSSASVLDAAGALMEGRSACGRLRAVRDLPADIRLFEAPSAESEAA 838

Query: 373  SIAIALRMSLDENKK--------------------KSALITADRNLARRVKLELTRFGIN 412
             I   +R  +                           A++   R L   ++  L+R G+ 
Sbjct: 839  WIGDRIRSLIGSTAHTLVDAAPEGALPGEGTFGPGDIAVLVRVRALIPVLQRTLSRLGVP 898

Query: 413  I--------DISAGIPLSTTLHSSILTSLLNAIFKLNDFM--AIATLVKHPLA----KFG 458
            +             + L        +           D +      L + PL        
Sbjct: 899  VAAPETEAFWADQRVSLILAAAGRFVGIGSAVAGGPGDEVNCPDKMLARGPLGVAAYLRE 958

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSL--VLDRIATQKNNTHVPHWQSRLSEED 516
             P       ++A      +        + L +   +   + T +  +      S  + + 
Sbjct: 959  SPPFDELFWQSAAFKALSKAYDTHGGWVGLINWVNLQSELETVRRRSEKVQVMSLHAAKG 1018

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
             E   + +  +   I P     T           +D  +        +      
Sbjct: 1019 LEFRAVFLPALEDGILPFAGAATLSGHADREHMRTDLEEERRLFYVGITRAAEG 1072


>gi|325124416|gb|ADY83939.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 659

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/431 (12%), Positives = 111/431 (25%), Gaps = 62/431 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    Y     L    + I   T+RA  E+ +   +  G ++  L    +       
Sbjct: 37  KTIVARAAYLIDQGLPANQIQILTFTRRAASEIVARVEQHVGVQAKGL-RASTFHTFCMY 95

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +          + +    L + RL+                           N + 
Sbjct: 96  LLRRNPQAFGLNQFSIIDRDDQLLMFRLLRG---------------------KDKDNVLP 134

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            A  L D+             L     ++           +    K + +R  E N    
Sbjct: 135 KAAELCDLYSYARN---TQSKLSEALIKQL-PDAYEHKTQIAELMKTYEQRKRERNFLDY 190

Query: 208 VGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                 +           + + G    +++     + P    L+  +        +    
Sbjct: 191 DDILSIVAVHLQNSEALTNWVAGFCQALLVDEMQDTNPLQWALLQPLIGKVK---LFCVG 247

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       +     ++ +        +          +  L +     + + ++SN +  
Sbjct: 248 DDAQSIYGFRGADFENIHSFKERIPDAE---------VLTLALNYRSTQEILDLSNWLLA 298

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            S +  +  L       +                    L    NE EEA  IA  L    
Sbjct: 299 HSPIDYQKQLQAHRGQGQKPQ-----------------LHLFGNEFEEANWIAQDLITRH 341

Query: 383 DE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
            +  N     ++      AR ++       I      G+ L  + H   + SLL  +   
Sbjct: 342 QQGANWHDHMVLVRSGYSARYLEGAFIAAEIPYRFIGGVKLLESAHVKDVLSLLRIVSNP 401

Query: 441 NDFMAIATLVK 451
           +D +A    + 
Sbjct: 402 HDDLAWMRFLT 412


>gi|120603526|ref|YP_967926.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
 gi|120563755|gb|ABM29499.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
          Length = 1127

 Score = 67.3 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 67/594 (11%), Positives = 141/594 (23%), Gaps = 121/594 (20%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +   R ++   +   + E              +     T+RA  E+        G  +
Sbjct: 564  PGTGKTRTLV-GRVQRLVAEGVAAR--------RIVAVTFTRRAATEMDERLSVTLGDGA 614

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
              LP   +L  +  E +           PPV   +   E AR +    N           
Sbjct: 615  -PLPRTDTLHALAFEFWHRSSA-----QPPVLLSE---EAARRVFAEANPDATAQTLREA 665

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
               L++         LA  LA ++D    ++  W                          
Sbjct: 666  WDELAVCRERMQVCSLA--LAPLLDRYVQQKAAWN-----------------LADYTDLL 706

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            ++W                   +      L       +++       P    L+  +   
Sbjct: 707  EFW-------------------LEQIHNGLYVPPWRHVLVDEIQDLSPLQLALVRALL-P 746

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
            P G       D       +                                D+K    + 
Sbjct: 747  PGGEGFFGIGDPDQSIYGFRGA---------------------------HGDVKGALDEA 779

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
               +S  +  R+   S + +      +        ++  ++   +D+ L EA +   EA 
Sbjct: 780  WPGLS-VVTLRANYRSSASVLDAAGALMEGRSACGRLRAVRDLPADIRLFEAPSAESEAA 838

Query: 373  SIAIALRMSLDENKK--------------------KSALITADRNLARRVKLELTRFGIN 412
             I   +R  +                           A++   R L   ++  L+R G+ 
Sbjct: 839  WIGDRIRSLIGSTAHTLVDAAPEGALPGEGTFGPGDIAVLVRVRALIPVLQRTLSRLGVP 898

Query: 413  I--------DISAGIPLSTTLHSSILTSLLNAIFKLNDFM--AIATLVKHPLA----KFG 458
            +             + L        +           D +      L + PL        
Sbjct: 899  VAAPETEAFWADQRVSLILAAAGRFVGIGSAVAGGPGDEVNCPDKMLARGPLGVAAYLRE 958

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSL--VLDRIATQKNNTHVPHWQSRLSEED 516
             P       ++A      +        + L +   +   + T +  +      S  + + 
Sbjct: 959  SPPFDELFWQSAAFKALSKAYDTHGGWVGLINWVNLQSELETVRRRSEKVQVMSLHAAKG 1018

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
             E   + +  +   I P     T           +D  +        +      
Sbjct: 1019 LEFRAVFLPALEDGILPFAGAATLSGHADREHMRTDLEEERRLFYVGITRAAEG 1072


>gi|320531922|ref|ZP_08032830.1| hypothetical protein HMPREF9057_00697 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135864|gb|EFW27904.1| hypothetical protein HMPREF9057_00697 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 447

 Score = 67.3 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 73/280 (26%), Gaps = 64/280 (22%)

Query: 725 TDFFDNLKKRGQCYLDWTRKLDY-------TTKQPHYKRPKPFPP--LEAQPRTYSFSEI 775
               D  ++RG+  +D    L                  P    P   + +    S S++
Sbjct: 80  ETATDTERRRGRVAVDLLADLARQGVSGADPATWIGAAGPTSHTPLVAQGERIRVSPSDV 139

Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
           + L   P   +  R              D    G+L H I      + +          +
Sbjct: 140 EGLAACPLKWFLTRNGGSAP------ASDAQALGSLVHEIAERAESEHLRGP------AL 187

Query: 836 KQIIDSHFEKENLPPHIDI-IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
           ++  +        P      +       +      +     +   +  V  P +  ++  
Sbjct: 188 REAFEERLTDLGYPATWQGGLAADRARAMIERLDAYLSDCDALGIRADVERPVRSDVDIP 247

Query: 895 ------------------------GIHLTGFADRIDLLK---------------SGFVDI 915
                                    + ++G  DR++ L                +G V I
Sbjct: 248 LRVLSPEVRERAGLRMPMEGPDAVPVRISGRIDRLERLGGSPGDDPDDTAGIGRNGTVRI 307

Query: 916 TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
            D KTG    +   Q+   PQL+    AL A     +   
Sbjct: 308 IDLKTGQRVPQ-DVQRH--PQLATYRLALSAQGLDVVGGA 344


>gi|149920859|ref|ZP_01909321.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
 gi|149818258|gb|EDM77711.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
          Length = 1100

 Score = 67.3 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 85/801 (10%), Positives = 182/801 (22%), Gaps = 106/801 (13%)

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
           + E LH L       ++L   D  K         + + +        +   R  A   + 
Sbjct: 249 ELEKLHGLVVRDLAKYFLPQIDLAKR-----RAAVADYDDLLFRAAWLLRERPNARARLA 303

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                ++I     + P  A + + +   P+                W+    +   + + 
Sbjct: 304 ERFDAVLIDEVQDTDPIQAEVAALLTREPD------------ADGEWDAHPPRRGRLFAV 351

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                +  ++  A    +  ++   ++    ++     RS+     ++      +     
Sbjct: 352 GDAQQSIYRFRRADQTTWRQLESLLMRDGEKLALTENFRSVPYLVEWVNTTFGHLPGYQR 411

Query: 345 LENKIPNIQKCFS-DVALIEADNEREEAISIAIALRMSLD--------------ENKKKS 389
                   +      + L     + +E  +I   L                         
Sbjct: 412 QRPHRQQGRLMPVVRLPLPPTATDLDELGAIVRYLLELRRCGEVVDKTTQQPRALVWSDV 471

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            L+      A  ++  LTR GI   +  G          + T+ L  + +  D  +   +
Sbjct: 472 MLLLPSWARADALQDALTRAGIPAVVEGGGSFFERDEIRLATAALECLNEAGDEQSAVFV 531

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
           ++                                       L   R A       VP   
Sbjct: 532 LRGLFGLTWED------------------------------LAKHRAADGAWRYSVPDPP 561

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
                +   L   L                             W  L    L        
Sbjct: 562 PGPVADAFSLLRSLARR---------------------RGRDSWVALLDELLDRSRAA-- 598

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                L   E           +I        +  E + ++  L   + +         + 
Sbjct: 599 AVWALLRDGEAKLANLDKLRGLIRQFELTARSPAEVLRMLGALDKEQDLSRVDVGEEAVR 658

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS--RVMQSDLNLKTAEKYI------ 681
           I    +++ L    ++L            A N       V    L L   E+Y       
Sbjct: 659 ITSYFKAKGLEAPVVMLCFARRRSEGVQAAVNRRERKVAVKLGALRLVDWERYETEEKLA 718

Query: 682 ---GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
               +    +  A   R  +      +N +                       + R   +
Sbjct: 719 NTEERRRWMYVAATRARDQLVIVDREQNKLIREHLANGLPFTAAMNPALLPPPQWRDGTF 778

Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
            D    +D            P P    Q        I Q      +  +   L       
Sbjct: 779 ADLDPDVDT--WLEDPPDEPPEPDPTEQWSRLIRDTITQSKEASTSWKSVHELASRERVS 836

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
                     G L H ++ +L      +   E    +   +        + P    + R 
Sbjct: 837 GPSSSVGILGGNLVHAVMEKLDFSGSKEAQTERAEALLPGLARSL---GVGPERTQLCRG 893

Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF--VDIT 916
           +  ++         +        +V +P     +     ++G  D             + 
Sbjct: 894 ILLRMLDDPTLDIARSAPE---HWVEVPFAYRDDEHERVVSGRIDLAFPTDESRRLWYVV 950

Query: 917 DYKTGDNPKKETAQKLIDPQL 937
           D+K+   P+     +    QL
Sbjct: 951 DWKSDLPPRDSPGWRNYQAQL 971


>gi|126652433|ref|ZP_01724605.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905]
 gi|126590704|gb|EAZ84819.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905]
          Length = 1238

 Score = 67.3 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 79/896 (8%), Positives = 189/896 (21%), Gaps = 179/896 (19%)

Query: 189  KIASKYWTERLVELNASSPV-----GYQIALMRAEAEHLMKG-------TKGPIIIAGST 236
             I S+ +    +E              QI  +  + E                +++    
Sbjct: 360  TIFSEQFRLAKLERGIIDFSDLEHYALQILTVEIDGELQPSPVALDLKKRFKEVLVDEYQ 419

Query: 237  GSIPATARLMSTV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT-------TY 288
             +      ++  V +       +    D       +     K      S           
Sbjct: 420  DTNMLQETILQLVKSGEEQDGNLFMVGDVKQSIYRFRLAEPKLFMRKYSEFLETPEVTGM 479

Query: 289  STHPQYSLAKLLDFLDIKR---------EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                  +     + L+               + L + +  +   +    +  +P +   M
Sbjct: 480  RIDLNANFRSRKEVLNATNYIFAQIMGERVGEILYDDNASLKP-AAPYDEKEVPVELVVM 538

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--------------- 384
                  E       K      L E    + EA  I   +R  +++               
Sbjct: 539  HPPQDEEVVDEQEDKTEEATELEELKKSQYEARFIIDRIRQMMEDGTTVYDTKSLTERPL 598

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                  ++      +  +  E    GI +   +       L   I+ ++L  +      +
Sbjct: 599  KYSDIVILMRSMTWSTDLVEEFKLAGIPLYAESSKGYFDALEVMIMLNVLKVVDNPYQDI 658

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
             +A++++ P       E    R  ++                 L+  +       +  T 
Sbjct: 659  PLASVLRAPFVGLTENELAKIRLADS----------KVPFYDALRQFIRSEGQEIQTTTF 708

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                                      +   +    N        S+SD     +    + 
Sbjct: 709  EK------------------------LQRFMLAFENWRDLARRGSLSDLI-WKIYLDTHY 743

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG-ETVKPKIE 623
                         +   + L        +T        + +ID +    D   T K   E
Sbjct: 744  YEMVGAMPNGKQRQANLRILHDRALMYEQTAFRGLFRFLRFIDRMRTRGDDLGTAKSIGE 803

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
            K   + ++    S+ L +  + + G+       +        +     +     E  I  
Sbjct: 804  KDDVVRLVTIHSSKGLEYPVVFVAGMGRPFNKMDFHNPYLFDQDFGLAVKAIDPENRITY 863

Query: 684  AAHDFEMA-------NGTRHLIYTRSLRENNIPTI------------ASRWLQRLLVLGG 724
             +  F               +             +               W     +   
Sbjct: 864  TSLPFLALKEKKELEMRAEEMRVLYVAMTRAKERLILVGSVKNWEKTRDNWQDAQNISSD 923

Query: 725  TDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKPFPPLEAQPRTYSF-SEIKQLIND 781
                + L+ R   YLDW       +                 +        +        
Sbjct: 924  APLQEYLRARANSYLDWVGPAVARHGDFASQATTSYKELDSPSHWWIQPVDTRHYSYDIQ 983

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRG-----------------------TLFHNIITE 818
            P+    +++L          +     +                         L      E
Sbjct: 984  PFDDDIQQLLTTQEDEALLSEITTRFQAQYTYQKSTRKRSKTSVSEIKRIENLQRQEEPE 1043

Query: 819  LIKKRINKNTPEINHLMKQII-DSHFEKENLPPHIDIIWRHL----------FHKISHSF 867
                   K T          + D       +   +  + +H+                  
Sbjct: 1044 YYFAPPAKQTSASIAPRPTFLQDQQLTGAEIGTAVHTVMQHIPQFGFDDIGAVKGFVADL 1103

Query: 868  LEHEEKIQSSIEKI---------FVNIPAKMAIESI-----GIHLTGFADRIDLLKS--- 910
            +  +   ++  + +            I  +              ++    R+D       
Sbjct: 1104 VAKQLLTEAEGKVVPIAKVFHFFHTEIGQRFKQARQIRREMPFTIS----RVDEDGDAQI 1159

Query: 911  -------------GFVDITDYKTGD--------NPKKETAQKLIDPQLSLEAAALK 945
                         G   + DYKT              +        QL + + A++
Sbjct: 1160 VQGIIDCLFEDEYGNWVLLDYKTDRILPHFAKEPALTKEIMGRYAVQLRVYSEAIE 1215


>gi|325295714|ref|YP_004282228.1| hypothetical protein Dester_1542 [Desulfurobacterium
            thermolithotrophum DSM 11699]
 gi|325066162|gb|ADY74169.1| hypothetical protein Dester_1542 [Desulfurobacterium
            thermolithotrophum DSM 11699]
          Length = 268

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 87/280 (31%), Gaps = 45/280 (16%)

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
              R +SFS++++     Y  Y   + K + +       D    G+  H ++   +     
Sbjct: 12   HLRPWSFSKVQKAKRCQYEFYWNYVEKKEPLE----RADFLVLGSGVHFVLENALNAVFE 67

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
            +  P ++  +       F++E     ++ I    F      ++  + +  S  + I   +
Sbjct: 68   RERP-LSRDLLFYFAETFKREEPLAEVNKI--AEFFPNILKYVNGQLRRASESKFIASEL 124

Query: 886  PAKM--------AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937
               +           S  + L G  D +       + I D+KT      +     I  QL
Sbjct: 125  ELAVDKDFNLLSDFCSERVFLRGKLDFVFSKGD-TLYIVDHKTSR---SKNFNNKIKTQL 180

Query: 938  SLEAAALKAGSFSQID--CRKVANLFY------IRLKQKFKIDCITNDKKKYSAD-ELSE 988
               A       F +      +V N+ Y      I  +   K+  +       + + EL  
Sbjct: 181  RWYALLA-NVKFPEFKRFALEVHNVRYGTVNRFIFTENDLKLFKLRLLPIIENIEGELLG 239

Query: 989  KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028
            KS   LI                    E +    ++ H+ 
Sbjct: 240  KSFSELI----------------PSPCESNCRWCDFRHIC 263


>gi|157827215|ref|YP_001496279.1| DNA helicase II [Rickettsia bellii OSU 85-389]
 gi|157802519|gb|ABV79242.1| DNA helicase II [Rickettsia bellii OSU 85-389]
          Length = 653

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/418 (10%), Positives = 106/418 (25%), Gaps = 64/418 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPV 103
            ++     T +A +E++     +          I +   +        +  L+  LN   
Sbjct: 55  QNILAVTFTNKAAKEMQERVHNLVSSYGL---NIGTFHSMAARILRDQIEHLNLGLNSRF 111

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
           + I +  +L RLI           K   P+    +                 I   + + 
Sbjct: 112 TIISQDDQL-RLIKDIVKLKNIDTKKYAPKLIHIV-----------------ISRWKDQG 153

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                L +       +     A       + + + L+  N        +       ++  
Sbjct: 154 LLPNKLSS---SDTNLPLQRVAKL---VYEEYQQNLLISNVVDFGDLLLYNNELFIKNPD 207

Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     I+I     +          +A+       +   D       W      +
Sbjct: 208 ILKHYQERYRYILIDEYQDTNVVQYLWARMLASLSKNICCV--GDDDQSIYGWRGAEVGN 265

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +          L   +  L+        +   ++ +   +              
Sbjct: 266 ILRFEKDF---------LNATIIKLEQNYRSTLPILAAASNVINNNK------------- 303

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITAD 395
               +     +   ++    + +I   N++EEA  IA     L      +    A++   
Sbjct: 304 ----NRHGKTLWTDKESGEKIKIISCWNDKEEARYIAAEIAILVREGRYSAGNIAILVRA 359

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
               R  +       +   I  G+     +    + + +      ND +A+  ++  P
Sbjct: 360 GFQTRSFEEAFINSAMPYKIIGGLRFYERMEIRDVLAYIRIALNQNDNLALERIINVP 417


>gi|256374968|ref|YP_003098628.1| hypothetical protein Amir_0821 [Actinosynnema mirum DSM 43827]
 gi|255919271|gb|ACU34782.1| hypothetical protein Amir_0821 [Actinosynnema mirum DSM 43827]
          Length = 279

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 11/178 (6%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
             + +++    + P       + +                G   HN +  L      + +
Sbjct: 18  RVTPAKLATWADCPRRFRMAYVDRPSPGRGGPWAHSA--MGAAVHNALKALFDLPPAQRS 75

Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
           P+ +  +          ++              + +    ++ E + ++I+ I V     
Sbjct: 76  PDRSVALLNRAWKSDGFQDAEQSWRYR-----DRAAGWVRDYVETLDTTIDPIGVERWVS 130

Query: 889 MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
               +  I   G  DRIDL     + I DYKTG +       +     L+L A A + 
Sbjct: 131 A--PTGTIVAEGRVDRIDLRGD-ELVIVDYKTGKHALSTDDARGSQA-LALYAVAARR 184


>gi|319788985|ref|YP_004150618.1| hypothetical protein Theam_0003 [Thermovibrio ammonificans HB-1]
 gi|317113487|gb|ADU95977.1| hypothetical protein Theam_0003 [Thermovibrio ammonificans HB-1]
          Length = 270

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 90/274 (32%), Gaps = 32/274 (11%)

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
               R +SFS++++     Y  + R + KL+ +       D    G+  H ++   +    
Sbjct: 14   EHLRPWSFSKVQKAKRCQYEFFFRYVQKLEPLE----RADFLVLGSGVHFVLENALNAVF 69

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI--QSSIEKIF 882
             +  P    L+       ++++     ++ I +  F      F+  + +   +  ++   
Sbjct: 70   LRRKPLSKELLLHYAR-LYKEQEPLADLNRIGQ--FFPNILKFVNGQLRRVDRGELKFWE 126

Query: 883  VNIPAKMAI-----ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937
            + +     +     +S G+ L G  D +   K   + I D+KT  +         +  QL
Sbjct: 127  LELAVDRELRCVPYDSGGVFLRGKLDFLF-SKGETLYIVDHKTSRSH---DFDNRVKTQL 182

Query: 938  SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
               A         +    +   L    ++       + + ++        E     L+ I
Sbjct: 183  RWYALLAA----VKFPQFQRFALELHNVRYGTVKRVVFSRRE-------IEAFKVKLVPI 231

Query: 998  VTLLQNGEQPFISH---LRLSEKSNIQSEYDHLA 1028
            +  ++               SE +    E+ HL 
Sbjct: 232  IESVEEEFLGKSFRELTPSPSELNCRWCEFRHLC 265


>gi|86158935|ref|YP_465720.1| ATP-dependent nuclease subunit B-like protein [Anaeromyxobacter
            dehalogenans 2CP-C]
 gi|85775446|gb|ABC82283.1| ATP-dependent nuclease subunit B-like protein [Anaeromyxobacter
            dehalogenans 2CP-C]
          Length = 1029

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 63/568 (11%), Positives = 136/568 (23%), Gaps = 45/568 (7%)

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                      R++   + + +    +R    +    +  +  + +    +V         
Sbjct: 433  APGTARAHAARLSAFLDASGLRRRAARGPSAEVARDLAALAGLEEAAEAVVRASALLGEG 492

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               L+ + + +     L+   L    +      E  G   +   S      +     A  
Sbjct: 493  GAALAPAAFLERLGLALEQAALPPGPEPAAGAVELSGLDEAPGLSARAVVVTGAGHGAFP 552

Query: 605  WIDIITRLIDG--ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
                   L+         +  + + +   G   +         L    E V     A  P
Sbjct: 553  AAPPPEPLLRDPERLALNRRLRRAAVAPAGARRAEATYRAFAALAAGREAVAITWAAPGP 612

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
                   + L  +       + A              T                  L   
Sbjct: 613  AGDGGPLAPLAAEALAAAGVELAGPAAAPEPPLARARTVRAALRAAVRAGDAGAAALAGT 672

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR---TYSFSEIKQLI 779
                   +  +RG         +      P+  +  P             ++ + ++   
Sbjct: 673  ALGPRAADALRRGAIESARRAAVLARRPAPYAGQVDPPALAALAAALPEEWAPTRLEGYA 732

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK------KRINKNTPEINH 833
              P+  +  ++L+L        D D  D G+L H  +   ++                  
Sbjct: 733  RCPFRGFLAQVLRLPDRAAADLDIDPRDEGSLLHAALERFVRGRMERHAWPPDGGEADLA 792

Query: 834  LMKQIIDSHFEKEN-----LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA- 887
             M+      F +         P      R          +  E +    +    V +   
Sbjct: 793  EMRAAAAEVFARFEREGRTGDPAAWAARREAVLARLDRVVRAEARDHGGLAPAAVELRFG 852

Query: 888  --------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP---- 935
                    ++A +   + L G  DRID    G + + DYK  +    +     +DP    
Sbjct: 853  RGGPLPALELAWDGERVRLEGRVDRIDAGP-GRLLVVDYK--NARSGDAYADGLDPEAFG 909

Query: 936  ----QLSLEAAALKAGSFSQIDCRKVANLFY--------IRLKQKFKIDCITNDKKKYSA 983
                Q+     A    +F      +              + L     +           A
Sbjct: 910  DAAFQIPAYLMAAAR-AFPGRPRLEATYALLRRAERLDPVALDAGDPLLAAEPPAPPPGA 968

Query: 984  DELSEKSLKNLIEIVTLLQNGEQPFISH 1011
             +        ++E V  ++ G  P  S 
Sbjct: 969  PDGPRPFAAAVVERVRQVRAGAFPIASR 996


>gi|291525355|emb|CBK90942.1| recombination helicase AddA, Firmicutes type [Eubacterium rectale DSM
            17629]
          Length = 1220

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 67/210 (31%), Gaps = 10/210 (4%)

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
              +L + +    Y   +              + +     D  A  A    +   + +   
Sbjct: 983  VSELKHDSMVEKYDSTEREAERPKFLLEEKETYVPDFARDDEAGGASN--ESKELKNAVG 1040

Query: 802  DPDRTDRGTLFHNIITEL----IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                  RGT  H ++  L    +     K+   ++  +K+ +D   +K  +   +  + R
Sbjct: 1041 VNQGALRGTAVHRVMECLDFKSLCDIDTKDHVAVSAFVKKSMDEMLKKGLITDDMYRLTR 1100

Query: 858  HLF-HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
                 +   S +            ++   P  M  +  G+ + G  D +  L++  + + 
Sbjct: 1101 PKLIEQFISSDVAARMAQADKRGDLYKEKPFVM--DYEGVLVQGIID-VFWLENDKIVLL 1157

Query: 917  DYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            DYKT      +        QL L A AL  
Sbjct: 1158 DYKTDRVNAAKELIDRYSTQLKLYADALGR 1187


>gi|261342239|ref|ZP_05970097.1| exodeoxyribonuclease V, beta subunit [Enterobacter cancerogenus ATCC
            35316]
 gi|288315575|gb|EFC54513.1| exodeoxyribonuclease V, beta subunit [Enterobacter cancerogenus ATCC
            35316]
          Length = 1180

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 93/881 (10%), Positives = 212/881 (24%), Gaps = 117/881 (13%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGS 238
             A   ++ A      R  EL     +      +R+E      H ++      +I     +
Sbjct: 330  RAMAEIRDAVAREKRRRGELGFDDMLSRLDEALRSENGEALAHAIRTRFPVAMIDEFQDT 389

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
             P   R+   +        +L   D       +            + +    H       
Sbjct: 390  DPQQYRIFRRIWRQQPETALLLIGDPKQAIYAFRGAD--IFTYMKARSEVEAHYTLDTN- 446

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
                  +          +      R +           +D+R       +          
Sbjct: 447  WRSSPGMVESVNALFERMDAAFMFREIPFKPVKSASKNADLRFEYNGAVQPAMRFWLLDG 506

Query: 359  VALIEADNEREEAISIAIALRMSLDENKK-----------------KSALITADRNLARR 401
                 AD +   A   A  +R  L    +                    ++   R  A  
Sbjct: 507  EGYGVADYQTAMAQHCAAQIRDWLSAGSRGEALLWKGENATPVKASDITVLVRSRQEAAL 566

Query: 402  VKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            ++  LT   I  + +S    +  TL +  +  LL A+        + + +   +      
Sbjct: 567  IRDALTLLTIPSVYLSNRDSVFDTLEAQEMLWLLQAVLAPERESTLRSALASSMLGLNAR 626

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
            +              +    +  +    + ++              +  +    E     
Sbjct: 627  DIDALNNNETAWDEVVDEFVHYRERWQKRGVMAMLRELMAQRRIAENLLATAGGE----- 681

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
                  +   +      +   +      ++  W        Q +              E 
Sbjct: 682  ----RRLTDILHISELLQEAGSQLESEHALVRWL------SQQIADPNSNASSQQMRLES 731

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
             K L  +    I     ++   +    I    +  +      E    +  L   E+ +  
Sbjct: 732  DKHLVQIV--TIHKSKGLEYPLVWLPFIANYRVQDQAFYHDRETFEAVLDLSKAETSVEL 789

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLS---RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
             +   L      ++   T      S     +      KT E     +A    +  G    
Sbjct: 790  AEAERLAEDLRLLYVALTRSVWHCSLGVAPLFRRRGEKTGETDFHLSALGRLIQRGEPKD 849

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
                +     I ++    +   +     +   +L ++ +  L+    +          R 
Sbjct: 850  A---AGLRQCIESLCGDHIALHVPELPDNRRWHLPEQAEPDLNARPIVRTVADD---WRV 903

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
              +  L+   ++ +   + +L  D   V    +  +     F +       GT  H++  
Sbjct: 904  TSYSGLQQHGQSIAQDLMPKLDIDAAGVGEVPVEPVLTPHQFPRGASP---GTFLHSLFE 960

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK---- 873
            EL                + + ++  EK       +  W+ +  +  ++ L+        
Sbjct: 961  EL-------------DFTQPVSEAWVEKMLQSGGYEAKWQPVLTEWVNAILQAPLTEEGI 1007

Query: 874  --IQSSIEKIFVNIPAKMAI-----------------------ESIGIH-----LTGFAD 903
               Q + +   V +   + I                         +        L GF D
Sbjct: 1008 SLSQLTAKDKQVEMEFYLPIASPLRAEALDALIREYDPLSAGCPPLNFRQVQGMLKGFID 1067

Query: 904  RIDLLKSGFVDITDYK-----------TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
             +   + G   + DYK           T             D Q  L   AL      ++
Sbjct: 1068 LVFRHQ-GRYYLLDYKSNWLGENSDAYTQQAMASAMQMHRYDLQYQLYTLALHRYLRHRM 1126

Query: 953  DC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
                       + Y+ L+     +  +          L EK
Sbjct: 1127 ADYRYEDHFGGVIYLFLRGVDPANPSSGIFSTRPDAMLIEK 1167


>gi|262039829|ref|ZP_06013104.1| exodeoxyribonuclease subunit V beta [Klebsiella pneumoniae subsp.
            rhinoscleromatis ATCC 13884]
 gi|259042829|gb|EEW43825.1| exodeoxyribonuclease subunit V beta [Klebsiella pneumoniae subsp.
            rhinoscleromatis ATCC 13884]
          Length = 1178

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 105/865 (12%), Positives = 221/865 (25%), Gaps = 130/865 (15%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTG 237
              A   ++ A      R  EL     +      +R +        ++      +I     
Sbjct: 329  ARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRGDSGETLASAIRQRFPVAMIDEFQD 388

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            + P   R+   +        +L   D       +      +      +        Y+L 
Sbjct: 389  TDPQQYRIFRRIWRRQPETALLLIGDPKQAIYAFRGADIFTYMKARGDVAAH----YTLD 444

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF- 356
                        V RL ++S+  +    +          +      +    +P +     
Sbjct: 445  TNWRSSPGMVGSVNRLFSLSDNPFMFHEIPFLPVKEAAKNKGLRFTVDAADVPAMNVWLM 504

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
                +   D +   A   A  +R  L   ++  AL+            ++T    N   +
Sbjct: 505  PGDTVGSGDYQTFMAQLCATQIRDWLSAGQRGRALLWRGETSRPVQASDITVLVRNRLEA 564

Query: 417  A--GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
            A     L T    S+  S  +++F+  +   +  L++  LA         + A +     
Sbjct: 565  AQVREALQTLGIPSVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSM---- 620

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                       +D+++L  D  A          ++    +      +  +         L
Sbjct: 621  ------FGLTALDIENLNQDEQAWDALVEEFSEYRQIWRQRGVMPMLRALMTARHIAENL 674

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
            +  +  +      L IS+  +   + L++                    L    ++ I  
Sbjct: 675  LATRGGERRLTDILHISELLQEAASQLESE-----------------HALVRWLAQHIAE 717

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                 A+    ++                    + I+   +S+ L +  + L  +     
Sbjct: 718  PDSNAASQQMRLE---------------SDKHLVQIVTIHKSKGLEYPLVWLPFIARFRK 762

Query: 655  PKNTAKNPFLSRVMQSDLN-------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
                  +   +  +  DL        L  AE+        +                 ++
Sbjct: 763  QDQAFYHDRETFAVVLDLGQDEASLELAEAERLAEDLRLLYVALTRAVWHCSLGVAPLSS 822

Query: 708  IPTIASRW----LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
              +  S +    L RLL  G       L  R   +      L    +        P    
Sbjct: 823  RKSGNSDFHLSALGRLLQAGEAMDAAGLAARLADFCHGDIALQRPGELDLTPWQAP---- 878

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH-----FKKDPDRTDRGTLFHNIITE 818
             A     S  E+++ I D + V +   L+            + D D    G +       
Sbjct: 879  AATIPRLSARELQRRIADDWRVTSYSGLQQHGFSGGQDLLPRLDVDAAGVGEVVEEPQLT 938

Query: 819  LIKKRINKNTPEINHLMKQIID-------SHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
              +           H + + +D           ++      D  W  +        L+  
Sbjct: 939  PHQFPRGAAPGTFLHSLFEELDFTQPVPEGWMAEKLQLSGFDAQWAPVLTDWLGGVLKTR 998

Query: 872  ------EKIQSSIEKIFVNIPAKMAI-----------------------ESIGIH----- 897
                     Q +     V +   + I                         +        
Sbjct: 999  LPGPDIALNQLAARDKQVEMAFYLPIAQLLTAECLDALIRQYDPLSADTPPLDFRQVRGM 1058

Query: 898  LTGFADRIDLLKSGFVDITDYKTG---------DNPKKETAQKL--IDPQLSLEAAALKA 946
            L GF D +   + G   + DYK+            P  E A +    D Q  L + AL  
Sbjct: 1059 LKGFIDLVFRHE-GRYYLLDYKSNWLGEDREAYTRPAMEQAMRAHRYDLQYQLYSLALHR 1117

Query: 947  GSFSQID----CRKVANLFYIRLKQ 967
                ++      R    + Y+ L+ 
Sbjct: 1118 YLRHRLADYDYDRHFGGVIYLFLRG 1142


>gi|319902330|ref|YP_004162058.1| UvrD/REP helicase [Bacteroides helcogenes P 36-108]
 gi|319417361|gb|ADV44472.1| UvrD/REP helicase [Bacteroides helcogenes P 36-108]
          Length = 1104

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 88/882 (9%), Positives = 219/882 (24%), Gaps = 119/882 (13%)

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAK-NLADIIDIIETEEKKWEDLHALKNEKYGMW 180
                                  + + LA+ +L  ++     E  + +    L + +  + 
Sbjct: 293  VTLQNSLADAKNWATKTSRRRDDIVRLAETSLLPLLQDA--ERLRPQKSRTLNSCRLSLQ 350

Query: 181  WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-------GPIIIA 233
             L     L    +       E N          L +   E                ++I 
Sbjct: 351  HLNKLRLLNHIDEEVRTLNREHNRFLLSDTSALLHKLVREGDSSFVFEKIGANIRNVMID 410

Query: 234  GSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
                +          +       GA  L   D       W        N   ++   +  
Sbjct: 411  EFQDTSRMQWDNFRLLLLEGLSQGADSLIVGDVKQSIYRWRNGDWGILNSLGNDDETTPG 470

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
               ++                 G + +    R   +  +          N  +       
Sbjct: 471  YGQAMK---------------NGGLPSHFPVRVETLKTNRRSETRIIRFNNALFTLAANY 515

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
            +   + D           E       L+ +  +  ++    +        +K        
Sbjct: 516  LNTLYLD-----------ELKKECYPLKRAYADVAQE----SPKTKERGYIKASFLSPDE 560

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK----HPLAKFGFPEKYLSRA 467
              + +          +++   +   +        I  LV+     P     F ++     
Sbjct: 561  EHNYT------EQTLAAMGKQVRELLDAGVRPDDITILVRKNKNIPPIADYFDKELRLAV 614

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
             +               +  L+ L        K +  V +      +     A+     +
Sbjct: 615  VSDEAFRLDASQAVCMLMDALRYLSNPENIIAKASLIVGYQTIFSPQATPAEAMQPQAIL 674

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                  L    T++  T   + + +  +                +  +  ++    L S 
Sbjct: 675  SD--EMLPPAFTSRMETLRLMPLYELLEELFGIF---------GMSRVEKQDAY--LFSF 721

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
            F  + E      +    +I      +  +T+     ++  + IL   +S+ L F T+++ 
Sbjct: 722  FDAVTEYLQNNSSEPDSFIRFWEETLCAKTI--PGGETDGIRILSIHKSKGLEFHTVLVP 779

Query: 648  GLNEGVWPKNTAKNPFLSRVM----------------------QSDLNLKTAEKYIGQAA 685
              +  +  +   +  + +                         Q D   +  + ++    
Sbjct: 780  FCDWKLENETNNQLVWCTAPEAPYNAINLIPVSYSATMAESVYQEDYLRERLQLWVDNLN 839

Query: 686  HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
              +         +   S ++       +  L   L            +    Y D     
Sbjct: 840  LLYVALTRAGKNLILWSKKDQKG--TMAELLAHTLPQMAHTGTGGWNEEQSVYEDGQPCP 897

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
              T K P    P     L  +P          L +  +    R    +  +   + D   
Sbjct: 898  SAT-KAPATASPTFINKLTQKPAKLPVHMESMLHDIEFRQSNRSADFIAGVDEEQSDQRF 956

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK-IS 864
             +RG L H + +++       +  +    +  + +           I  + R  F + + 
Sbjct: 957  INRGRLLHTLFSDI---ETEADIDDAISRL--VFEGIIGHTETEQQIRELTRRAFTQPMV 1011

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924
              +     ++ +  + I+             +      DR+ ++K G   + D+K G   
Sbjct: 1012 KDWYSGSWQLFNECDIIWQEE--------GELRTR-RPDRV-MMKDGETVVVDFKFGKPD 1061

Query: 925  KK--ETAQ--------KLIDPQ-LSLEAAALKAGSFSQIDCR 955
            KK  +  Q            PQ +      ++ GS  ++   
Sbjct: 1062 KKYNKQVQGYMQLLACMGYAPQKIRGYLWYVEEGSVEEVRAA 1103


>gi|89094047|ref|ZP_01166991.1| ATP-dependent exoDNAse beta subunit [Oceanospirillum sp. MED92]
 gi|89081721|gb|EAR60949.1| ATP-dependent exoDNAse beta subunit [Oceanospirillum sp. MED92]
          Length = 1179

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 100/904 (11%), Positives = 240/904 (26%), Gaps = 165/904 (18%)

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            + + + L   +A+  V     L+ A  E          +I     + P    + S + + 
Sbjct: 346  QTFDDLLTGFSAALSVDQTGLLVSAVREQFPVA-----LIDEFQDTDPLQYGIFSHLYSD 400

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
            P  + ++   D       +       T I +  +   T+   +  +    +      + +
Sbjct: 401  PFNSALVMIGDPKQAIYAFRGADIF-TYIQARRSVSETYTLDTNWRSTSGMVDAVNKLFQ 459

Query: 313  LGNVS---NEMYGRSMVISKSFLPPDTSDMRNTDILENKIP-NIQKCFSDVALIEADNER 368
              + +   +E    + V +        +  ++     N      ++  + V  + A   +
Sbjct: 460  FADSAFIYDEDIPFTPVKAAGKSAKKLTIQQHEPAALNIWHLESEEPLNKVQYLSAF-AQ 518

Query: 369  EEAISIAIAL-----RMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLS 422
              A  I   L                A++  DR  A  ++  L  +    + +S    + 
Sbjct: 519  STASEIDRLLSGDASIGDRSVEGSDIAVLVRDRFEAEEIRRALAVYEHPCVYLSNQDSVF 578

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             +  +  L+ +L A+ +  +  A+   +   +           +    L+ +    N   
Sbjct: 579  NSQEALELSLILAAVEQPQNERALKAALATEIL---------LQNVQQLDQLNYDENAWE 629

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
              + +        +        V    SR+  +    A LL                 + 
Sbjct: 630  GVVAEFTEYQEIWL-----KLGVLPCLSRMLHQRNLSARLLEQ------------MGGER 672

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                 L +++  +   + ++                     L   F++ I   S      
Sbjct: 673  RLTNLLHLAELLQQASSEVEGTSG-----------------LIRWFNEQIANPSG----- 710

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
                         + +     + + + I+   +S+ L +  + L  +      K    + 
Sbjct: 711  ----------ASDDKILRLESERNLVTIVTIHKSKGLEYPIVFLPFIANFREQKTAFYHD 760

Query: 663  FLSRVMQS------DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                 +         L     E+   +    +     + +  Y          +  SR  
Sbjct: 761  DEGTAVLDLSSGEGALEEADKERLAEELRLLYVALTRSVYRCYLGLADIRLGNSKKSRLS 820

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLD--------------YTTKQPHYKRPKPFPP 762
               +        DNL +        +  +                   +P  +       
Sbjct: 821  DSAIGYLLLQNGDNLDEALSQLSQVSDAIQICSPPDHGAQKDMFAFVDEPEMEALSVREF 880

Query: 763  LEAQPRTYSFSEIKQLINDPYAV-YARRILKLDFIPHFKKD------------PDRTDRG 809
                 R++  S    L             L L+ +    ++            P   + G
Sbjct: 881  SGKIDRSWRVSSYSALSRHSAEHLPVLPGLDLEVVEESGEEQVGDDGMTIFNFPKGANAG 940

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            T  H++  E+       N         QI +            +  W+ +  ++    L+
Sbjct: 941  TFLHSVFEEIDFYTYLHNPECRIEYQAQISEQLIL-----AGYEEAWQPVIDQLIVDVLQ 995

Query: 870  HEEKIQSSI------EKIFVNIPAKMAIESIGIH-------------------------- 897
             E             +   V +   +  + + +                           
Sbjct: 996  TELGDGGFSLGQVRDKDRLVEMEFMLKADHLQVAQLEGLIRRYDALSAQTRPVAFEPLKG 1055

Query: 898  -LTGFADRIDLLKSGFVDITDYK-----------TGDNPKKETAQKLIDPQLSLEAAALK 945
             L GF D +  +      + DYK           T +  ++  A+   D Q  L + A+ 
Sbjct: 1056 MLKGFIDLLFRVDD-RYYVLDYKSNHLGNRADCYTQEALERAMAEHRYDLQYLLYSLAVH 1114

Query: 946  AGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
                 ++      +    +FY+ L+    +     D    +    S +  + LIE +  L
Sbjct: 1115 RLLMQRVPNYDYDKHFGGVFYLFLRG---MTACGKDSGNTTLGVFSNRPERELIEKMDQL 1171

Query: 1002 QNGE 1005
              GE
Sbjct: 1172 FAGE 1175


>gi|291527058|emb|CBK92644.1| recombination helicase AddA, Firmicutes type [Eubacterium rectale
            M104/1]
          Length = 1220

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 66/210 (31%), Gaps = 10/210 (4%)

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
              +L + +    Y   +              + +     D  A  A    +   + +   
Sbjct: 983  VSELKHDSMVEKYDSTEREAERPKFLLEEKETYVPDFARDDEAGGASN--ESKELKNAVG 1040

Query: 802  DPDRTDRGTLFHNIITEL----IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                  RGT  H  +  L    +     K+   ++  +K+ +D   +K  +   +  + R
Sbjct: 1041 VNQGALRGTAVHRAMECLDFKSLCDIDTKDHVAVSAFVKKSMDEMLKKGLITDDMYRLTR 1100

Query: 858  HLF-HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
                 +   S +            ++   P  M  +  G+ + G  D +  L++  + + 
Sbjct: 1101 PKLIEQFISSDVAARMAQADKRGDLYKEKPFVM--DYEGVLVQGIID-VFWLENDKIVLL 1157

Query: 917  DYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            DYKT      +        QL L A AL  
Sbjct: 1158 DYKTDRVNAAKELIDRYSTQLKLYADALGR 1187


>gi|153855193|ref|ZP_01996377.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814]
 gi|149752362|gb|EDM62293.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814]
          Length = 1221

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 19/165 (11%)

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL-------MKQIIDSHFEKE-NLPPH 851
             +      RGT +H ++  L  K + + T +               +D    +       
Sbjct: 1035 DEVLAGAARGTAYHRVMELLDMKGMPEFTEDTAGEKENWKKYFMDWLDDQVRRGRIEEDA 1094

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG----------IHLTGF 901
               I      + + S +    +     ++++   P  + I++            I + G 
Sbjct: 1095 ARCICWEDILQFAKSGIGRRLREADGKQRLWREQPFVLGIDARELYPEEEDGELILVQGI 1154

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             D       G + + DYKT    +KE   +    QL   A AL+ 
Sbjct: 1155 IDAYFEEPDG-LVVLDYKTDKVRRKEELAERYQEQLRYYAKALEQ 1198



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/557 (9%), Positives = 139/557 (24%), Gaps = 57/557 (10%)

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG------------TKGP 229
              AD +++ ++ + E+    N       +   +R   +    G                
Sbjct: 336 EELADLVRLFAERFEEQKRAQNMIDFSDMEQYALRILTQKTENGFVPSKIAEEYQKQFEE 395

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAI-VLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
           I+I     S      ++++V+   +G   +    D       +     +           
Sbjct: 396 IMIDEYQDSNLIQEAILTSVSGCRSGRYNIFMVGDVKQSIYRFRLSRPELFLEKFRTYNI 455

Query: 289 ST--------HPQYSLAK-LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                     H  +   K +L+  +     +            ++ +   +  P + +  
Sbjct: 456 EESKTQRIDLHKNFRSRKEVLESANAIFRQIMTEKLGGIVYDDQAALYPGAEYPENDNVK 515

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN-------------- 385
               ++++ +  + K       I ++    EA  IA+ +R  L                 
Sbjct: 516 TEILVMDSDLEILSKEEDFEEKIPSE-RELEARMIAMRIRELLRSQKVTDKETGELRNVR 574

Query: 386 KKKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                ++T        V  E L R GI            T    +L   L  +      +
Sbjct: 575 YSDIVILTRSIKGFADVFTEVLNREGIPTYAGTSEGYFQTQEIGVLMDYLRVLDNRRQDI 634

Query: 445 AIATLVKHPLAKFGFPEK-YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            +  ++    A     E   +  A                       L L +   Q ++ 
Sbjct: 635 PLTAVLSSAFAGLSQEELAEIRCAYPDTAFFESVTKYREQGENADIQLKLQKCLDQMDDF 694

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                 + + E   ++             P    +          + +  +         
Sbjct: 695 RKIVPYTPMHELLWKILETTGYGDYVASMPGGAQRKANLDMLIEKARAYESTSYKGLFHF 754

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
           V   E  +  ++ + E      S+  +  +T   +  +  + ++    ++ G   +  ++
Sbjct: 755 VRYIEQLQKYDVDYGEA-----SIEDEHADTVRVMTIHKSKGLEFPVVIVAGMGKRFNMQ 809

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
            + +   L       L+        L       +  K           L          +
Sbjct: 810 DARSAVALHAGMGVGLDA-----VNLEYRTKIPSIIKKVIQKEEALESLG--------EE 856

Query: 684 AAHDFEMANGTRHLIYT 700
               +      +  +  
Sbjct: 857 LRVLYVALTRAKEKLII 873


>gi|467028|gb|AAA17213.1| u2126v [Mycobacterium leprae]
          Length = 212

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 46/160 (28%), Gaps = 10/160 (6%)

Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
           I         L              +   +  +  +  +           ++ +   G+ 
Sbjct: 6   IAAERDLDGELDAKQRTQLLDEARTLLSGY--YRLEDPTRFNPQSCEQRVEVELAD-GLL 62

Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALKAGSFSQIDCR 955
           L GF DRID+  +G + + DYKTG  P    A        Q+   A  L           
Sbjct: 63  LRGFIDRIDVAATGELRVVDYKTGKAPPAAQALAEFKAMFQMKFYALTLLHS-----RGV 117

Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
             A L  I L     +D   +  +     +      + + 
Sbjct: 118 LPARLRLIYLADSQLLDYAPDRDELLRFGKTLMAIWRTIQ 157


>gi|311105227|ref|YP_003978080.1| hypothetical protein AXYL_02036 [Achromobacter xylosoxidans A8]
 gi|310759916|gb|ADP15365.1| hypothetical protein AXYL_02036 [Achromobacter xylosoxidans A8]
          Length = 266

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 63/197 (31%), Gaps = 13/197 (6%)

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
             +      S + +L + P    A+ +L +               GT  H       + +
Sbjct: 1   MQRIIPIRASSLAELFDCPARWEAKNLLGMRMPSS-----GAARLGTAIHAGTAAFDQAK 55

Query: 824 INKNTPEINHLMKQIIDSHF--EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
           ++ +    +    + + S    ++E                  H+   +  +I    + +
Sbjct: 56  LDGSPITADDAAGEFVKSLHGTDEEVDWDDASPNDAERIGLALHT--RYCSQIAPHQDYV 113

Query: 882 FVNIPA-KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA---QKLIDPQL 937
            V +   +M I  +GI LTG  DR+    SG + I D K+G                PQ+
Sbjct: 114 AVELTCDRMEISDLGIALTGTTDRVRRTASGELGIADLKSGARAVGSDGTVTTAGHGPQM 173

Query: 938 SLEAAALKAGSFSQIDC 954
            +     +     QI  
Sbjct: 174 GVYEILAQHAIGEQITA 190


>gi|254696352|ref|ZP_05158180.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260760724|ref|ZP_05873067.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671156|gb|EEX57977.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 713

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/474 (10%), Positives = 125/474 (26%), Gaps = 59/474 (12%)

Query: 74  ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131
           +L  +  + +  ++     L +    +       +   LE A  +      L        
Sbjct: 241 LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300

Query: 132 PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            E      +  A    L     +  D      E   + L  L   +     L A   +  
Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
             + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358 LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +++                      V +         G            I+ +++N  
Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
               +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538 EMVEEPDDWRVPVDQLAVPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588

Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
               L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
           A L+K PL  +     +                  +       + +   ++  +
Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWR 702


>gi|222528367|ref|YP_002572249.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
 gi|222455214|gb|ACM59476.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
          Length = 951

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/422 (12%), Positives = 122/422 (28%), Gaps = 76/422 (18%)

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN------------ 661
            GE        + +  +L    ++ L+F  + L GL E                      
Sbjct: 519 QGERFSSFSSFNDSAVLLSIHSAKGLSFPIVFLVGLCESTGYFPGRSPKLRGSYDTSTRE 578

Query: 662 ----PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT-------------RSLR 704
               PF      + +   + ++   +    F +A                        ++
Sbjct: 579 YIIAPFWMEKEYTRIKNISKQQEKEELKRLFYVAITRPMAGLFMINSSLREAIKKRGGVK 638

Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
                   +  L +   +G       +K   +   +        T              E
Sbjct: 639 SFGEEVGLNYILAKAEEIGIEKEVVEIKDTEEDLSNDFTCKQKNTISSVLPLMILPDEFE 698

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF----KKDPDRTDRGTLFHNIIT-EL 819
            + +  S S I      P     + I+ L          +   +    GT  H ++    
Sbjct: 699 NRFKFLSPSHIMDFKRCPAMFSLKYIMGLPVFDELSSREEIQQNAKVLGTTVHRVLELTS 758

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE--EKIQSS 877
           +K   + ++     +++   +                  +  ++  +F E +  ++I+  
Sbjct: 759 LKNIQSLDSNIALAVLENNFEDE---------------KIVKELILNFFESQFVKEIKDK 803

Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--- 934
           + K    +P    + +    + G  D++  L+   V + D+KT             D   
Sbjct: 804 VIKEESELPFYFKLSNQ--MIYGIIDKVYHLED-EVLLVDFKTN---------LHFDDTK 851

Query: 935 -----PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
                PQL +   A+K     +   +K+ +  +  L++  K D    D+   +  ++ +K
Sbjct: 852 FNIYIPQLFIYTKAMK----ERFPSKKIFSSIFW-LREGKKFDYEQKDEHLENVIDVIKK 906

Query: 990 SL 991
             
Sbjct: 907 IR 908


>gi|206576716|ref|YP_002236758.1| exodeoxyribonuclease V, beta subunit [Klebsiella pneumoniae 342]
 gi|206565774|gb|ACI07550.1| exodeoxyribonuclease V, beta subunit [Klebsiella pneumoniae 342]
          Length = 1178

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 103/864 (11%), Positives = 212/864 (24%), Gaps = 128/864 (14%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTG 237
              A   ++ A      R  EL     +      +R +        ++      +I     
Sbjct: 329  ARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRGDSGETLASAIRQRFPVAMIDEFQD 388

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            + P   R+   +        +L   D       +      +      + T          
Sbjct: 389  TDPQQYRIFRRIWRRQPETALLLIGDPKQAIYAFRGADIFTYMKARGDVTAHYTLD---T 445

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                   +     +      N    R +             +R T    +          
Sbjct: 446  NWRSSPGMVSSVNRLFSLSDNPFMFREIPFLPVKAAAKNQGLRFTVDAADVPAMNVWLMP 505

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
               +   D +   A   A  +R  L   ++  AL+            ++T    N   +A
Sbjct: 506  GDTVGSGDYQTFMAQLCATQIRDWLSAGQQGRALLWRGETSRPVQASDITVLVRNRLEAA 565

Query: 418  --GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                 L T    S+  S  +++F+  +   +  L++  LA         + A +      
Sbjct: 566  QVREALQTLGIPSVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSM----- 620

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                      +D+++L  D  A          ++    +      +  +         L+
Sbjct: 621  -----FGLTALDIENLNQDEQAWDALVEEFSDYRQIWRQRGVMPMLRALMTARHIAENLL 675

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
              +  +      L IS+  +   + L++                    L    ++ I   
Sbjct: 676  ATRGGERRLTDILHISELLQEAASQLESE-----------------HALVRWLAQHIAEP 718

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                A+    ++                    + I+   +S+ L +  + L  +      
Sbjct: 719  DSNAASQQMRLE---------------SDKHLVQIVTIHKSKGLEYPLVWLPFIARFRKQ 763

Query: 656  KNTAKNPFLSRVMQSDLN-------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
                 +   +     DL        L  AE+        +                 ++ 
Sbjct: 764  DQAFYHDRETFAAVLDLGQDEASLELAEAERLAEDLRLLYVALTRAVWHCSLGVAPLSSR 823

Query: 709  PTIASRW----LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
             +  S +    L RLL  G       L  R   +      L    +        P     
Sbjct: 824  KSGNSDFHLSALGRLLQAGEAMDAAGLAARLADFCHGDIALQRPGELDLTPWQAP----A 879

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH-----FKKDPDRTDRGTLFHNIITEL 819
            A     S  E+++ I D + V +   L+            + D D    G +        
Sbjct: 880  ATIPPLSARELQRRIADDWRVTSYSGLQQHGFSGGQDLLPRLDVDAAGVGEVVEEPQLTP 939

Query: 820  IKKRINKNTPEINHLMKQIID-------SHFEKENLPPHIDIIWRHLFHKISHSFL---- 868
             +           H + + +D           ++      D  W  +        L    
Sbjct: 940  HQFPRGAAPGTFLHSLFEELDFTQPVPDGWMAEKLQLSGFDAQWAPVLTDWLGGVLKTRL 999

Query: 869  --EHEEKIQSSIEKIFVNIPAKMAI-----------------------ESIGIH-----L 898
                    Q +     V +   + I                         +        L
Sbjct: 1000 PGADIALNQLAARDKQVEMAFYLPIAQLLTAERLDALIRQYDPLSADTPPLDFRQVRGML 1059

Query: 899  TGFADRIDLLKSGFVDITDYKTG---------DNPKKETAQKL--IDPQLSLEAAALKAG 947
             GF D +   + G   + DYK+            P  E A +    D Q  L + AL   
Sbjct: 1060 KGFIDLVFRHE-GRYYLLDYKSNWLGEDREAYTRPAMEQAMRAHRYDLQYQLYSLALHRY 1118

Query: 948  SFSQID----CRKVANLFYIRLKQ 967
               ++      R    + Y+ L+ 
Sbjct: 1119 LRHRLADYDYDRHFGGVIYLFLRG 1142


>gi|320161381|ref|YP_004174605.1| putative ATP-dependent DNA helicase [Anaerolinea thermophila UNI-1]
 gi|319995234|dbj|BAJ64005.1| putative ATP-dependent DNA helicase [Anaerolinea thermophila UNI-1]
          Length = 751

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 69/643 (10%), Positives = 176/643 (27%), Gaps = 56/643 (8%)

Query: 64  FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNL--NPPVSNIQRLLELARLILIWRN 121
           F+   G    I   +++L  +  +       L+        V   +    L  +  +W  
Sbjct: 74  FLREAGVMPGIGYTVRTLHGLANDIVRERPELAGLPENYRIVDEGESDRILMDIARMWMR 133

Query: 122 KLPDIIKDLYPESPLSLPIS---PANAIWLAKNLADI-IDIIETEEKKWEDLHALKNEKY 177
              D I+        S             L  +LA   I   + +    + L    +   
Sbjct: 134 GHSDWIEHYLKPDLSSQDRDQVMREKIFGLIADLARTSIRYCKDQGITPQRLREELDRLP 193

Query: 178 GMWWLLAADFLKIASKYWTERLV---ELNASSPVGYQIALMRAEAEHLMKGTKG--PIII 232
                  A+      + + + L     ++    +     ++  +   L +       I+ 
Sbjct: 194 VPL--PLAEVACELYEEYQKALQYRVAVDFDDLIYLAWFILEKDEVLLEQLRYRWPYILE 251

Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
             +  S      ++  +A  P     +   D +            +T       ++   P
Sbjct: 252 DEAQDSSRLQEEILKKLAGSPGN--WVRVGDPNQAIY-----ETFTTANPEYLISFRKQP 304

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
                +L +        ++    +     G       +        +      E+  PN 
Sbjct: 305 GVIARELPESGRSSPSIIRLANLLICWSQGLDE--EDALKNGLALPLIQPTSQEDPKPNP 362

Query: 353 QKCFSDVAL-IEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTR 408
                 V L ++A  +R+E   +  +L+  L +     +  A++      A  +  EL +
Sbjct: 363 PDVPQGVTLYMKALEDRKEFELVQQSLQRWLADEKNRDRTVAVLVPRNQRAMDIVEELNK 422

Query: 409 FGINIDISAGIPLSTTL-HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
             I +  +     + T   + +L  +L  +   +  + ++ L K     F          
Sbjct: 423 HKIPVVDTLLKTTTQTRSAARMLKKVLEWLASPDSAVKLSDLYKVWRTAFSSSADE---- 478

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
               + +  R  K  +  M L+             +           E+      L+   
Sbjct: 479 ----KPLMDRVAKWIHRQMPLEKWAFPLPGEDVLESEQLRQSDPALVEECVRFRELLRRW 534

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLT--VTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
              +   V       +       +D          L  +           + +E  K + 
Sbjct: 535 SMAVVLPVDQLILTLAQDLFTEPADLAVAHKLAGALDILKNMNPDWQLKDYVDELDKIVQ 594

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
           +    +  +   +  N  ++                      + +    +++ L +D + 
Sbjct: 595 NERRFVGFSKDDLNFNPDDY-------------------KGRVVVATMHKAKGLEWDRVY 635

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
           L  +N   +P    ++ +++       +L  + + + Q    F
Sbjct: 636 LLSVNNYDFPAGDPEDTYIAENWFIRNHLNLSAELLEQLRILF 678


>gi|118475254|ref|YP_891891.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414480|gb|ABK82900.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp. fetus
           82-40]
          Length = 685

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 81/273 (29%), Gaps = 35/273 (12%)

Query: 188 LKIASKYWTERLVELNASSPVGYQIA-----LMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
           +  A K + E L   N               L   +  + +      I++     +    
Sbjct: 171 IAKAYKLYEEYLAANNLVDFDDLLALTYKILLNNNDLANEISNRYKYIMVDEYQDTNDLQ 230

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
            +L+  +       +V+   D       W     ++              Q++  KL+  
Sbjct: 231 YKLLRKLCECHENLVVV--GDDDQSIYGWRGAKIENILNFKD--------QFNNVKLIK- 279

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                            +              +     N   L  ++ + +K    + +I
Sbjct: 280 -----------------LEENYRSTPSILKAANELIDHNRSRLGKQLFSTKKDEYPIQII 322

Query: 363 EADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
           E  +E  EA  IA  ++  L       + A++     L+R ++  L +  I   +  G+ 
Sbjct: 323 ENGDENIEARVIAGQIQKLLGSGVKADEIAILYRVNALSRSLEDGLNKARIPYKMVGGVK 382

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
               +    + S L  I   ND  ++  ++  P
Sbjct: 383 FYERMEIKDIISYLRLILNPNDDFSLNRIINRP 415


>gi|239813421|ref|YP_002942331.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239799998|gb|ACS17065.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 712

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/543 (11%), Positives = 138/543 (25%), Gaps = 66/543 (12%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL     +     + L  + +   ++RA QE+                     G V+   
Sbjct: 70  TLAHRVAHLIAGGVDLQRLLLLTFSRRAAQEMERR-----------------AGQVLARV 112

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
                     L    +       L R        L D            L     + + L
Sbjct: 113 LGLKSDKPPALPWAGTFHGIGARLLREYAAHI-GLNDHFTIHDRGDAEDLMGLVRHELGL 171

Query: 149 AKNLADI-----IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
           + ++           I +         A    +   W       LK     + E   + N
Sbjct: 172 SSSVNRFPRKGTCLSIYSRCVNTRAPLAEVLAEAFPWCAEWEAELKRLFGAYVEAKQQQN 231

Query: 204 ASSPVGYQI----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                   +     +       L+      +++     +    A ++  +   P+G  V 
Sbjct: 232 VLDYDDLLLYWAGMVAEPALAALVGERFDHVLVDEYQDTNLLQASILRALK--PDGRGVT 289

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       +   T ++     S        Q+S A  +  L+      + + +VSN 
Sbjct: 290 VVGDDAQSIYSFRGATVRNILDFPS--------QFSQAARVVTLERNYRSTQPILDVSNR 341

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
           +         +     T                        L+   +E ++A+ +A  + 
Sbjct: 342 VIA-----QAAERHAKTLWTDKPSAGRP------------QLVLVPDEAQQAVWVADKVL 384

Query: 380 MSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
              +     K  A++      +  ++LEL R  I      G+      H   L ++L   
Sbjct: 385 AHREGGLALKSQAVLFRAATHSAPLELELARRNIPFVKYGGLKFLEASHVKDLLAVLRFA 444

Query: 438 FKLNDFMAIATLVK----------HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
                 MA   + +            L          + A       +    + +     
Sbjct: 445 ENPRGRMAGFRVTQLIPGIGPATGARLLDAMDQAADPAAAVREFVPPSAAREEWAVFAEA 504

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
             +L    +    +      W     +   +    +    ++ +  L +   ++      
Sbjct: 505 YAALCAPSLPWPADVELAVRWYLPHLDRLYDDPSGVRRGDVEQLARLASGYGSRERFLTE 564

Query: 548 LSI 550
           L++
Sbjct: 565 LTL 567


>gi|13541570|ref|NP_111258.1| DNA helicase II [Thermoplasma volcanium GSS1]
 gi|14324966|dbj|BAB59892.1| rep helicase single-stranded DNA-dependent ATPase [Thermoplasma
            volcanium GSS1]
          Length = 885

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/418 (12%), Positives = 115/418 (27%), Gaps = 66/418 (15%)

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            D++  L   +    +   +  + +L   +++ L FD +I   L +      +  +     
Sbjct: 486  DLLNYLEVCDQELTESSNTERISVLTVHKAKGLEFDHVIY--LPKTTRDNFSVVDLCAYE 543

Query: 667  VMQSDLNLK-TAEKYIGQAAHDFEMANGTRHLIYT-------RSLRENNIPTIASRWLQR 718
            +++       + E        DF       H +          + +        +     
Sbjct: 544  LIREKTKRDISTELEDEDTRVDFVAITRPVHTLIIITDHLERYANKYAIKSGKPTAPSTE 603

Query: 719  LLVLGGTDFFDNLKKRG--QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
               +   D             +      LD      +  R         +    SFS ++
Sbjct: 604  HYSITSVDPNIEAYSAFINGRFDQAINALDRYAWIRNLIR-----DNMKKNNVISFSLLQ 658

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
             L  DP+      IL L              +G+  H +   L                 
Sbjct: 659  SL-QDPFQFLKEHILGLK------YKVPAMKQGSEIHTLAELL----------------- 694

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-- 894
                  F+KE+    I   +R  +  I    ++  +K   +++        ++ +     
Sbjct: 695  ------FKKESTELEIPPNYRPQYDNILK-VIDDMQKRYGAVQISAEE---EVTLPGQYL 744

Query: 895  -----GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
                    L G  D +      +  I DYKT     ++        QL            
Sbjct: 745  LPEAKSFILYGKLDAVFQSGD-YYYIVDYKTDKTTTRQKEHT---KQLHFYKTIYSKS-- 798

Query: 950  SQIDCRKVANL-FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
              +D  K+  L  YI L+       +    ++           + + + +T  ++ ++
Sbjct: 799  QSLDRSKIKTLIAYISLRTPVNTGKVDYRLEEVDNPNSIN-LEEEIRKYITFTEDPDK 855


>gi|256112426|ref|ZP_05453347.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
 gi|265993864|ref|ZP_06106421.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
 gi|262764845|gb|EEZ10766.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
          Length = 710

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/474 (10%), Positives = 125/474 (26%), Gaps = 59/474 (12%)

Query: 74  ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131
           +L  +  + +  ++     L +    +       +   LE A  +      L        
Sbjct: 241 LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300

Query: 132 PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            E      +  A    L     +  D      E   + L  L   +     L A   +  
Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242
             + + +                 +   A        ++ +      I++  +  + P  
Sbjct: 358 LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417

Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +++                      V +         G            I+ +++N  
Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477

Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 S +  +     + + +D +  + E  + L   +     R     +  +    + 
Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386
               +  + ++P  Q     V L         A  IA  +R  LD              +
Sbjct: 538 EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588

Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
               L+         +   L    + +  +  + L++ +    L +L   + + +D +++
Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
           A L+K PL  +     +                  +       + +   ++  +
Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWR 702


>gi|146309527|ref|YP_001189992.1| DNA-dependent helicase II [Pseudomonas mendocina ymp]
 gi|145577728|gb|ABP87260.1| ATP-dependent DNA helicase UvrD [Pseudomonas mendocina ymp]
          Length = 727

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 69/724 (9%), Positives = 163/724 (22%), Gaps = 161/724 (22%)

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI- 146
           +     L    +    + + R L LA         L   I  L      S     +    
Sbjct: 6   ELLLASLNDAQVQAVAAPLGRQLVLAGAGSGKTRVLVHRIAFLIQAMGASPHSILSVTFT 65

Query: 147 -WLAKNLADIIDIIETE---EKKWEDLHALKNEKYGMWWLLAA----------------- 185
              A  +   I+ +             H L +      W  AA                 
Sbjct: 66  NKAAAEMRHRIEQMLGHNPAGMWVGTFHGLAHRLLRAHWQEAALTENFQILDSDDQQRLI 125

Query: 186 ----DFLKIASKYWT----------------------------------------ERLVE 201
                 L +  + W                                              
Sbjct: 126 KRVIRELGLDEQRWPAKQAQWFINGQKDEGFRPQHIQAGGDLFLATMRGIYEAYEAACAR 185

Query: 202 LNASSPVGYQIALMRAEAEHLMKG-----TKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
                     +  +    +              I++     +       +  +A   +  
Sbjct: 186 TGVIDFSELLLRALDLWRDKPGLLEHYQRRFRHILVDEFQDTNAVQYAWLRLLAKGGDSL 245

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
           +V+   D       W     ++    SS+   +      L +L          +K    +
Sbjct: 246 MVV--GDDDQSIYGWRGARIENIQQFSSDFPDT-----QLIRLEQNYRSTAGILKAANAL 298

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                GR                     L  ++         +AL  A NE +EA  +  
Sbjct: 299 IANNNGR---------------------LGKELWTDGGDGEPLALYAAFNEHDEARYVVE 337

Query: 377 ALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
           ++  +L ++     + A++      +R ++  L R  I   I  G             + 
Sbjct: 338 SIEDALRKDGLKRSEIAILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAY 397

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L  +    +  A+  +V  P                 +    +   +      DL     
Sbjct: 398 LRLLDGRGNDAALERIVNVP--------------ARGIGEKTVESIREFARAQDLSMWEA 443

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
            R                           L       +   +            + +   
Sbjct: 444 IRRMLAVKA--------------------LPGRAAGALGGFIELIEGLAEKVMAMPLHQM 483

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN----AIEWIDII 609
           T++ +     +              E+G+       +++      + +           +
Sbjct: 484 TQVVIEQSGLLA------YHEAEKGEKGQARVENLEELVSAARAFENDEDDELTPLQAFL 537

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
           T            E   ++ ++    ++ L F  + L G+ EG++P              
Sbjct: 538 THASLEAGDTQAAENEDSIQLMTLHSAKGLEFPLVFLVGMEEGLFP-------------- 583

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
             ++L+   +   +    +       + L+ + +       +     + R +        
Sbjct: 584 HKMSLEEPGRLEEERRLAYVGITRAMQKLVISYAETRRLYGSETYNKVSRFVREIPAPLI 643

Query: 729 DNLK 732
             ++
Sbjct: 644 QEVR 647


>gi|321466936|gb|EFX77928.1| hypothetical protein DAPPUDRAFT_105537 [Daphnia pulex]
          Length = 566

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 7/146 (4%)

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
           LI+GGLNE VWP +   +P+LSR M+   N+ + E+++G  AHDF       +L  TRS 
Sbjct: 421 LIIGGLNEVVWPADEGGDPWLSRPMRETDNMPSLERWVGLMAHDFRHNFAGENLFLTRST 480

Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL-------DYTTKQPHYKR 756
           R    PT+ SR LQRL          N        + W   L           +     R
Sbjct: 481 RLQGAPTLPSRLLQRLEAALEASGQLNPSIGVSGLIKWKSPLFSLPRVRRLPVRVWTPGR 540

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDP 782
                       + S +E++    +P
Sbjct: 541 SPGRQGRLPLGWSLSVTEMEFWRREP 566


>gi|239626269|ref|ZP_04669300.1| UvrD/REP helicase [Clostridiales bacterium 1_7_47_FAA]
 gi|239520499|gb|EEQ60365.1| UvrD/REP helicase [Clostridiales bacterium 1_7_47FAA]
          Length = 608

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 66/687 (9%), Positives = 163/687 (23%), Gaps = 136/687 (19%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             + + +   T+ A +E++  + ++T      +    +   V                  
Sbjct: 46  DPSHILVITFTRAAAREMKERYEQMTQAGCGRV-SFGTFHSVFFLI-------------- 90

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                  L+LA           +              +   +      ++   I +++ E
Sbjct: 91  -------LKLAYRYQASNIVREEQRIQFIKAQLGDCGLEVEDEGEFISSILSEISMVKGE 143

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG-----YQIALMRA 217
               +  +A    +         +  K     + E+L               +Q+   R 
Sbjct: 144 MMDLDHYYAKNCPE---------EVFKQLYSGYEEQLRRHRLLDFDDMLVMCHQLFKERQ 194

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           +     +     I+I            ++  +A   N   ++   D       +     +
Sbjct: 195 DILSAWQDKYQYILIDEFQDINRIQYEIVKMLALPENNLFIV--GDDDQSIYRFRGARPE 252

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                        +P      L       R+ V+  G +      R     K+       
Sbjct: 253 LMLGFE-----RDYPDARRLLLDTNYRSSRQIVEAAGRLIAHNRTRFEKDIKAARGLGRP 307

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITAD 395
                                V + E     +E+++IA+ LR         +  A++   
Sbjct: 308 ---------------------VDIREWPEPMDESLAIAMELRDYASMGIAYQDMAVLFRT 346

Query: 396 RNLARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               R +  +L  + I   +   +P L        + S + A         I +++  P 
Sbjct: 347 NMGPRLLIEKLMEYNIPFSMRDTVPNLYDHWIVKNVLSYIKAASGDLCRANILSIINRPK 406

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                                 +      D ++   L  D +  +  +        R + 
Sbjct: 407 RYVSRDALEHQTVDWEAVKSFYQDKSWMLDRIE--QLEYDLLMLKSMSPAAAVNYIRKAV 464

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           +               +  L         + G                            
Sbjct: 465 DYDSYLREYAGERRMKVEELFEVLDQLQESAGGF-------------------------- 498

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
               +  +   +      E              ++ +   G            + ++   
Sbjct: 499 ----KTYEAWFAHMDAYREQ-------------LLKQAQGG------NGPEQGVSLMTMH 535

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            S+ L F  + +   NEG+ P + A                  ++ + +    F +A   
Sbjct: 536 SSKGLEFRVVYILDANEGITPHHKA----------------VLDQNLEEERRMFYVAMTR 579

Query: 695 --RHLIYTRSLRENNIPTIASRWLQRL 719
               L         +     SR+++ +
Sbjct: 580 AKERLHVYYVKERYHKKQEVSRFVKEV 606


>gi|28871867|ref|NP_794486.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855120|gb|AAO58181.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 907

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 86/848 (10%), Positives = 212/848 (25%), Gaps = 119/848 (14%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL+   ++     +  + + +   T +A  EL           +          DV    
Sbjct: 29  TLIHRIKHLVERGIPPSQILVLTFTNKAAHELVERLKVSGIAGAA---------DVWAGT 79

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
           F A  L        +  ++  + LA  ++  R     ++    P+  L   +   N    
Sbjct: 80  FHAFGLEFLRKYHQIFGLESDVRLADPLMQVR-----LMVSTLPKVRLKYYLRLQNPYDW 134

Query: 149 AKNLADIIDIIETEEKKWED----LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
              +   I  ++ E     D    L AL   +         + +    + +   +   + 
Sbjct: 135 LPGVLGHIKRLKEECLTVADYRARLAALPPCE--PDVANEREDIATLFEAYETAMRAEHL 192

Query: 205 SSPVGYQIALMRAEAEHLMK------GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
              V   IAL  ++A+               +++            L+  +A +      
Sbjct: 193 VDYVDL-IALPASQAKRDRTSVAQYIDHFSHVLVDEYQDVTEVMVDLLRQLALNAQS--F 249

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               D       W   + +S            H   +    +    ++R     L     
Sbjct: 250 WAVGDVRQAIHHWRGASIRSLM----------HFDATFLSTIPGATVRR---YALDLNRR 296

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                  + S + +    +D    + +    P+I        L E D++  +A++IA  +
Sbjct: 297 STPEILELFSCAGIHHALNDRMPLEPVTAYRPSIGVIP---TLYECDSKLSQAVTIAQRI 353

Query: 379 --RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
              +      +   +I+       ++   L    + +     +          L  L+  
Sbjct: 354 DGLVQRGVPYRDQVVISRKSANVEQIVEALENLNVPVLHIGDVC--QRPEIKKLLCLMEL 411

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLS--RAKNALELVALRGNKNSYDIMDLKSLVLD 494
           +       ++  L+  P  +    +        +    L   RG         L      
Sbjct: 412 LCMR-QPRSLVGLISEPAFRMPPQDIEHLIFLTRKGAGLSMQRGRWLWLPTPGLSPAGQQ 470

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
             +            SR  +   ++ +     +       +   T + +T          
Sbjct: 471 AKSNLALLLRGLKRDSRPWDFVSKVLLDQRYGLPNPADQTIQAHTQRLATWLF------- 523

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                                        + +    I +          E    I   + 
Sbjct: 524 --------------------------VYAVRNGDGDIRQARLSQFLLREELRRRIGEKLG 557

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA-------KNPFLSRV 667
              + P+      + ++    S+ L +  + +  +++  +  N          +     V
Sbjct: 558 DRGLPPEARVLDAVSVMTVHSSKGLEYPAIHVTDVDDASYGANRPFAYDVRGLDLIPPEV 617

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
           + S+      E+ + +    +   +  R  +Y             S W            
Sbjct: 618 LNSNGAEFMFEERVERNNLLYVALSRARDYLYLY---------EISGW------------ 656

Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                         +       K P                T S+   +  ++ P   + 
Sbjct: 657 --PRPVPLNRAAATSLVKRSGVKVPPAPIIPLPLASSTVVPTVSYEAFQAYMSCPLQYHY 714

Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-EINHLMKQIIDSHFEKE 846
           R  L L                    +++  + +   + NT  +    +  + D   +  
Sbjct: 715 RYELALTAEQEIDVSIRARW---AIMDMLLTVARDGTDPNTAFQAAWALHGLPDRTEDPG 771

Query: 847 NLPPHIDI 854
            +   I  
Sbjct: 772 LMDDAIAA 779


>gi|212639014|ref|YP_002315534.1| Superfamily I helicase domain and RecB family exonuclease domain
            [Anoxybacillus flavithermus WK1]
 gi|212560494|gb|ACJ33549.1| Superfamily I helicase domain and RecB family exonuclease domain
            [Anoxybacillus flavithermus WK1]
          Length = 965

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/440 (11%), Positives = 136/440 (30%), Gaps = 48/440 (10%)

Query: 598  IKANAIEWIDIITRL-IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
            +K    +++  +    I+      +   S  +  L   +S+ + F  +I+G L+     +
Sbjct: 551  LKMFFNDYLRYLQSGGINEYEDDSEYAPSGCVSFLTIHQSKGMEFPIVIVGSLDSTPTKQ 610

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
             +  +  L     +    +  EK      +DF     T    ++R+     +  +  +  
Sbjct: 611  YSDLDIILQNEYYNKEPFEPIEKTK---YYDFWRLYYT---AFSRAQNVLALTCLEQKAQ 664

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
             R      T  F ++      + D         K              +     S  ++ 
Sbjct: 665  GRGQRNVPTKEFADIYSTLPSWRDIDLFKIKLEKVKDVN----IKRQYSFTSHISLFDMC 720

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI-NHLM 835
             L    Y  +         +         T  G+L H  I ++ K  +     +I    +
Sbjct: 721  AL---QYKFF-------KELEFAPVRQGTTVFGSLVHQTIEDIHKAVLRGEEHKITPEKV 770

Query: 836  KQIIDSHFEKENLPPHIDIIW--RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
            ++   +++        + ++   +    +   +++E++++    I+         +++  
Sbjct: 771  EEWFHANYMYLVQKNRVYLMETTKEAALQQIKNYVENQKRNWYKIK----EAEVDVSLVK 826

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK---ETAQKLIDPQLSLEAAALKAGSFS 950
                L G  D +   +   V+I D+K+   P         +    QL + A  ++     
Sbjct: 827  NNYILNGTIDLV-QGEGDTVEIIDFKSEKKPNLLNERERIEHYRKQLEVYAHLVEERMGL 885

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
            ++       L+Y   +          +     +      ++K   +IV  ++N +     
Sbjct: 886  EVSKMH---LYYTGEQSGNPYVTFVKNNSSIDS------TIKTFDKIVERIENRDFAITK 936

Query: 1011 HLRLSEKSNIQSEYDHLARV 1030
                 +K     +     R 
Sbjct: 937  RP---KKHCGNCD----MRF 949


>gi|7007365|emb|CAB75588.1| putative DNA helicase [Prochlorococcus marinus str. PAC1]
          Length = 512

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/451 (10%), Positives = 124/451 (27%), Gaps = 71/451 (15%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTIL----PIIKSLGDVVEEKFTADLLLSYN 98
             +S+     T +A +E++     +  K+ + L    P  ++L    + +    +    +
Sbjct: 55  DPSSILAVTFTNKAAREMKDRLELLLAKRLSSLTHGKP-WRALQVAEQREIRNRIHREIS 113

Query: 99  LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
               +     L   +RL+    +K  D     + +       + A           +I  
Sbjct: 114 RELWIGTFHALF--SRLLRFDIDKFKDPEGLTWTKQFSIYDETDAQ---------SLIKE 162

Query: 159 IETEEKKWE-----------DLHA-----LKNEKYG--MWWLLAADFLKIASKYWTERLV 200
           I T++ + +            +       L  +              +    + + + L 
Sbjct: 163 IVTQDLQLDPKRFEPKKVRWAISNAKNQCLLPDDLSNNQEGQR-GKLVAETYRLYRKALA 221

Query: 201 ELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA----- 250
             NA           Q+     +           +++     +      L+  +      
Sbjct: 222 ANNALDFDDLLLIPVQLLQQNEKIRTYWHSRFKHVLVDEYQDTNWTQYELIKQLVTNGKD 281

Query: 251 ----NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
                  N   V    D       +     +       +    +      + L+      
Sbjct: 282 PSSFQDWNNRSVFVVGDADQSIYSFRAADFRILMGFQEDFGKKSLDNTYDSTLVK----- 336

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                        +       S      ++    N + ++  +   +     + L   D+
Sbjct: 337 -------------LEENYRSTSTILEAANSLISINKERIDKVLRATRGEGEPIRLTRCDD 383

Query: 367 EREEAISIAIALR----MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
           E  EA ++   LR     + + N    A++      +R ++  L R+ I   +  G+   
Sbjct: 384 EIAEAEAVIHRLRILDASNPELNWGDMAILYRTNAQSRAIEDSLVRWSIPYIVVGGLRFY 443

Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  L + L  +   +D +++  ++  P
Sbjct: 444 DRREIKDLLAYLRLLINPSDSVSLLRVLNVP 474


>gi|83721587|ref|YP_443364.1| exodeoxyribonuclease V subunit gamma [Burkholderia thailandensis
           E264]
 gi|83655412|gb|ABC39475.1| exodeoxyribonuclease V, gamma subunit [Burkholderia thailandensis
           E264]
          Length = 1149

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 83/884 (9%), Positives = 193/884 (21%), Gaps = 71/884 (8%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 65  PWAAQQVIVPSAALRRRLELDVAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 117

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA+ +A + D   T 
Sbjct: 118 HSPFAPDRLVWRCYRLLSDDGAAPWRGSPRLAAYLAAADAPMRHELAQRIATVFDHYLTY 177

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W          + +          A D     +  W   L EL+ S        L  
Sbjct: 178 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 237

Query: 217 A------EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
           A         H        + +       P    L+  ++   +  I             
Sbjct: 238 AGTFDPGVIAHAQAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCR----EF 293

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
           W  I   +   +        + Q     L ++    +  +  L  ++             
Sbjct: 294 WFDIVTAARVESLDAADQLDYQQVGHPLLAEWGRQTQAQLHMLHELTESAAASDASRYAE 353

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCF---SDVALIEADNEREEAISIAIALRMSLDEN-- 385
              P         IL+ +  +          V +    +   +   +   L    D +  
Sbjct: 354 NPAPTWLARVQNAILDLQPEDALGAPLAERGVEVHVCHSLARQLEVLHDRLLAWFDADPS 413

Query: 386 --KKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                  +   D   A  +   +           I   I+   P      + +L   L  
Sbjct: 414 LAPSDVLVAMPDLAAAGPLIDAVFGTSSGADAARIPYRITGLPPSHANPVARVLLDWLAL 473

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
             +      +   ++             + A  A   +     +     +          
Sbjct: 474 PERNVGAPELVEWLR-------------ADAIAARYGIDATALETVQTWLAASGARRGLA 520

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                  +      R +  D    + L   +     P+ T+     +  G   +      
Sbjct: 521 PDAVEPPNAAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLAR 580

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG--------------------S 596
               L        R L    + +      + F                            
Sbjct: 581 FTDDLDGFAQRIARDLTPQDWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEG 640

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             +A     +         +           +        R L +  + L G+++GV P 
Sbjct: 641 AGRAELPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPS 700

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
               + F    + + L  +           D  +A   R LI        +   +    L
Sbjct: 701 LARADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARDRLLIAYTGRSIRDNAPLPPAAL 760

Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
              L+                     R          +      P         S + + 
Sbjct: 761 VDELLDHLATVSAGPDASPDAVDAARRAFVIEHPLQPFSADYFAPGGALFTYDASRAALA 820

Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
           +L+ +     A             +     D    + +    L++ R+     +    + 
Sbjct: 821 RLLAEGGRAQALPFFSEPLPAEPAEPVAFADFERFWRHPARSLLRARLGIVLWDAQAELV 880

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
              +           +      L  + + +         +    
Sbjct: 881 D-TEPFELDYAGSDALAGRVLPLLIETADAGAFEHALRVADASP 923


>gi|317485209|ref|ZP_07944090.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
 gi|316923500|gb|EFV44705.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
          Length = 1084

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 79/780 (10%), Positives = 179/780 (22%), Gaps = 117/780 (15%)

Query: 228  GPIIIAGSTGSIPATARLMS--TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
              I++     +       +    +     G  +    D       W        +   S+
Sbjct: 374  THILVDEFQDTSREQWEAIHPLVLEALSRGGSLTWVGDVKQAIYGWRGGDATLFDEVRSD 433

Query: 286  TTY-STHPQYSL-----------------AKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
                +  P+  +                   L   L         L  +  +    +++ 
Sbjct: 434  AELCAVAPEPRVDILPTNWRSCRTIVETNNTLFRQLSETATAKAVLSAMLPKDTPSALLA 493

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----- 382
            +                 +N  P+  + F  +  +  D   +    +   L   +     
Sbjct: 494  AILEEGAQLLKEGFAGSEQNVAPDKAEGFLRLQRVYGDKSEDLDEEVRERLLGCVQEVVS 553

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                    ++      A +V   L   GI +       L+       +T+LL  +    +
Sbjct: 554  RRPWGDVTVLVRSNGKAAQVAGWLMEEGIPVVTDNSFLLAEHPLVEQITALLTFLDSPRN 613

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             +A  T +                                                 +  
Sbjct: 614  DLAFWTFLSG-----------------------------------------------RQM 626

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                   S  + ED   A    +     +                        L      
Sbjct: 627  LLPLIPLSEQALEDWAAARRTSERRNMPLFMAFREDFPDIWRKWIAPFHADAGLLTPYDV 686

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                     + + + +E           I         +   ++D   +    E      
Sbjct: 687  TREALGRLDIWSRYPDEAAFV-RRFLEIIHVAEGQGYGSLSSFLDYWNKHGQQEKAPM-P 744

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
            E    + ++   +S+ L F  +I+          +   +          L +        
Sbjct: 745  ETLDAVRVMTMHKSKGLQFPVVIVP-----WHNFSQRVDSPAVETHVDGLTVLAPRSPAS 799

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
              AH   +A+  R  ++   +           +L             +        L  T
Sbjct: 800  GYAHYKAIADNAREALHLLYVAWTRAEEELHAFLTETSSSRNASGLGSGLNVLLGALPMT 859

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND-------------PYAVYARR 789
            ++   T   P  +  +     +      + +E   LI               P     R 
Sbjct: 860  KETFETGTPPFVRPAEQAREPKTMRDGKAVAEELALIEPESIPAGQTNERWRPMHWLPRL 919

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             +  + +  F     +  RGT  H+ +  L  +   + T       +Q          LP
Sbjct: 920  RIFRNPLEEF--SFTQKRRGTFAHHCLACL--QTAGQLTGHPEEDARQAFKQGLRTFPLP 975

Query: 850  PHIDIIWRHLFHKISHSFLEHEE--KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL 907
                    H   ++   +    E  +              ++  ES  ++    +D + +
Sbjct: 976  IRDPETVEHEIVEMLAWYAALPEAGEWLRYGTP-----EQEIVDESGELY---RSDLV-V 1026

Query: 908  LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
                 + + +YKTG              QL      +   +   +       L Y+ LK+
Sbjct: 1027 DDGKRITVVEYKTGAPTPAHEI------QLQRYMRLISKAAPRPVRGV----LVYLDLKR 1076


>gi|171318889|ref|ZP_02908023.1| exodeoxyribonuclease V, gamma subunit [Burkholderia ambifaria
           MEX-5]
 gi|171095919|gb|EDT40857.1| exodeoxyribonuclease V, gamma subunit [Burkholderia ambifaria
           MEX-5]
          Length = 1112

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 76/855 (8%), Positives = 182/855 (21%), Gaps = 49/855 (5%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            + VP+    + L  +     G  + +     +       ++    +      P  S   
Sbjct: 35  QVIVPSAALRRRLELDIAARHGVCANVEFTYLA-------QWLWAQIGRVLTVPARSPFA 87

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN-AIWLAKNLADIIDIIETEEKKW 166
               + R   ++     D      P     L  S       LA  +A ++D   T   +W
Sbjct: 88  PDRLVWRCYRLFAQAAGDAPWLASPRLAAYLSASDDAMRYELAHRVAAVLDHYLTYRPEW 147

Query: 167 EDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVEL-NASSPVGYQIALMRAEA 219
                                  A D     +  W   L EL ++ +P  ++  +     
Sbjct: 148 LAAWQAGESVLAGDAAPRGISDAARDDEHWQAALWRALLAELSDSGTPPAHRFLVEARNL 207

Query: 220 EH---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
           +            + +       P    L+  ++   +  +            I      
Sbjct: 208 DTETVARADWPESVSVFALPTMPPLHVALLRELSRWIDVRVYALNPCREFWFDIVTAAHA 267

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++ +               LA+       +   +  L   +        V + +      
Sbjct: 268 EALDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAFGDASRFVGNPAPTWLAR 326

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                 D+              + +    +   +   +   L    D +           
Sbjct: 327 VQNAILDLQPEAELGEAPAERGIEVHVCHSLARQLEVLHDRLLAWFDADATLQPSDVLVA 386

Query: 397 NLARRVKLELTRFGI----------NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                    L                  I+   P      + +L   L    +      +
Sbjct: 387 VADLAAAGPLIDAVFGTAGAGGARVPYRITGLPPSQANPVARVLLEWLALPERQVGAPEL 446

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              ++       +     +       L A    +         + V     T  +     
Sbjct: 447 VEWLRVDAVAARYGIDAAALETVQTWLAAAGARRGLSPTASDDAAVPAPRHTFSDALARL 506

Query: 507 HWQSRLSEEDKELAVLL---------VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                + E    +   L          + + +                   +   W++L 
Sbjct: 507 FLGYAMPEGAAPVGAWLPIEAATGSEAELLGRLARFTDDLDGFSRRLASAHTPRAWSELF 566

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              +             L    +   L ++ + + E        A      +T  +D   
Sbjct: 567 ADTVARFFDSGAAYADALAGVRD--ALDAMLAAMTEGAPDEALPAAVVRAGLTAALDD-- 622

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-LKT 676
                     +        R L +  + L G+++GV P     + F    +   L   + 
Sbjct: 623 PARGGVPWGGVTFSSLTSLRGLPYRVVCLLGMDDGVLPSLARADEFDLMAVLPKLGDRQR 682

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
            +            A     + YT     +N P   +  +  LL              G 
Sbjct: 683 RDDERNLFLDLLLAARDRLLIAYTGRSIRDNAPLPPAALVDELLDHLAVVTAGADTAPGA 742

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                   +     QP                  +  + ++                   
Sbjct: 743 VDAARRAFIVEHPLQPFAAE------YFRPGSELASYDAERATLASLLAAEAARDATREQ 796

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
           P F +         +  +      +            ++     +               
Sbjct: 797 PFFAQPLPAEAVEPVAFSEFERFWRHPARALLRARLGIVLSDAQAELLDTEPFALDFAGS 856

Query: 857 RHLFHKISHSFLEHE 871
             L  ++    +E +
Sbjct: 857 DALAERVLPLLIESD 871


>gi|296130268|ref|YP_003637518.1| Exodeoxyribonuclease V [Cellulomonas flavigena DSM 20109]
 gi|296022083|gb|ADG75319.1| Exodeoxyribonuclease V [Cellulomonas flavigena DSM 20109]
          Length = 1148

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 75/850 (8%), Positives = 173/850 (20%), Gaps = 109/850 (12%)

Query: 214  LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
               A A   ++     +++     +     +++ T  +     +++   D       +  
Sbjct: 248  ATGAAAAERVRAPYRVVMVDEFQDTDQVQWQILRTAFHGHRTLVLI--GDPKQAIYAFRG 305

Query: 274  ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
                +        T +T  +           +              +             
Sbjct: 306  ADVHTYLEARGVATTATLGRSWRTDAPVLDGLAHLMGGAALGDPRIVVHPVEAAHTERRL 365

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI----AIALRM---SLDENK 386
                 +    +    +           +    +    A  +       LR          
Sbjct: 366  DGGPPVLVRRVTRRAVGAGSAAPKVDTVRSVVHRDVAARVVLTLTHSRLRDGDAWRPVLP 425

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
               A++      A  V+  L   G+   +S    + TT  +     LL+A+    D   +
Sbjct: 426  GDVAVLARRNADALAVREALAAVGVPAVVSGLSSVFTTAAARDWLVLLSALAATGDTARV 485

Query: 447  ATLVKHPLAKFGFPEK--------YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
            A     P   +                  +       L G   +  +    +  L     
Sbjct: 486  AAAALTPFVGWDATRLAGASDAQREDLADRMRTWSHVLAGQGVAALLQATAAAGLHERLA 545

Query: 499  QK--------NNTHVPHWQSRLSEEDKELAVLLVDHILQCI--TPLVTYKTNKNSTCGNL 548
             +        +  HV       + +    A  L + +   I    +   +        + 
Sbjct: 546  ARVDGERVLTDVRHVGEVLHAAARDAGLGAAALTEWLRARIDEAAVDYAEERSRRLETDA 605

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            +      +         +       + W   +   L                 +  + + 
Sbjct: 606  AAVQVVTVHAAKGLEFPVVMVPFAWDRWVPRDPSVLRYHDDDGTRRLHVGGRGSPGYDEA 665

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
              R    E  +        L    +         T+   G    +       +      +
Sbjct: 666  RARHQAEEAGEDLRLAYVALTRASSQVVLWWAPSTVSASGAVGRLVLGARDADGLPPDTV 725

Query: 669  QSDLNLKTAEKYIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRW-------L 716
                + + A  +   AA        E  +    ++    +R    P   +R         
Sbjct: 726  PVPRDDQAAAGFDALAAGSGGTVVHETVDAAPPVVRWEPVRGEPGPLEVARLGRGVDLTW 785

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
            +R    G T    +    G    D     D               P              
Sbjct: 786  RRTSYSGITAAAHDAGPAGPSVPDRPGVTDEPEDPGIQDETDGPAPTPPPHAGAGDEPDL 845

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
             ++       A               P  T  GTL H+++  +     +          +
Sbjct: 846  AVLAATTPDPALVAALRAVRSPLADLPGGTAFGTLVHHVLENVDTAAADLRGELRARCAE 905

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
                      +     D +   +                   +++   +  ++ +    +
Sbjct: 906  AAGGGGGLGLDPDALADALLPSMHTPAGPLLGGRTLAQVPPHDRLA-ELDLELPLAGGDL 964

Query: 897  H--------------------------------------------------LTGFAD--- 903
                                                               LTG  D   
Sbjct: 965  DPAGRRPATLADVADLLDAHLDPDDPFAAYAGRLRWLHADPGTRPAALRGYLTGSIDAVL 1024

Query: 904  RIDLLKSGFVDITDYKTGDNPKKET----------------AQKLIDPQLSLEAAALKAG 947
            R+D+       + DYKT      +                        QL L A  L   
Sbjct: 1025 RVDVDGDTRYVVVDYKTNRLAPPDDPLTAWHYRPEAMRTAMLDAHYPLQLLLYAVGLHRF 1084

Query: 948  SFSQIDCRKV 957
               ++     
Sbjct: 1085 LRWRLPGYDP 1094


>gi|221214001|ref|ZP_03586974.1| exodeoxyribonuclease V, gamma subunit [Burkholderia multivorans
           CGD1]
 gi|221166178|gb|EED98651.1| exodeoxyribonuclease V, gamma subunit [Burkholderia multivorans
           CGD1]
          Length = 1112

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 77/860 (8%), Positives = 184/860 (21%), Gaps = 47/860 (5%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I VP+    + L  +     G  + +     +       ++    +      P  S   
Sbjct: 35  QIIVPSAALRRRLELDIAARHGVCANVEFTYLA-------QWLWTQIGRVLDVPARSPFA 87

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN-AIWLAKNLADIIDIIETEEKKW 166
               + R   ++            P     L  S       LA  +A + D   T   +W
Sbjct: 88  PDRLVWRCYRLFAQAPEHAPWLASPRLAAYLGASDDAMRYELAHRVATVFDHYLTYRPEW 147

Query: 167 EDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVEL-NASSPVGYQIALMRAEA 219
                                  A D  +  +  W   L EL ++ +P  ++  +   + 
Sbjct: 148 LAAWQAGESVLAADGAPRAIGEAARDDERWQAALWRALLAELSDSGAPPAHRFLVDARQI 207

Query: 220 EHLMKGT---KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
           +            + +       P    L+  ++   +  +            I      
Sbjct: 208 DADAISRIDWPESVSVFALPTMPPLHIALLRELSRWIDVRVYALNPCREFWFDIVTAAHA 267

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++ +               LA+       +   +  L   +        V + +      
Sbjct: 268 EALDAAGRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAALGDASRFVENPAPTWLAR 326

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                 D+              + +    +   +   +   L    D +           
Sbjct: 327 VQNAILDLQPEAALGEPPAERGIEVHVCHSLARQLEVLHDRLLGWFDADSSLQPSDVLVA 386

Query: 397 NLARRVKLELTRFGI----------NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                    L                  I+   P      + +L   L    +      +
Sbjct: 387 VADLAAAGPLIDAVFGTAGPGGARIPYRITGLPPSQANPVARVLLDWLALPERQVGAPEL 446

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              ++       +     +       L A    +    +    + V     T  +     
Sbjct: 447 VEWLRVDAVAARYGIDASALETVQTWLAAAGARRGLAPVAHDDAAVPTPRHTFSDALARL 506

Query: 507 HWQSRLSEEDKELAVLL---------VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                + +    +   L          + + +                   +   W++L 
Sbjct: 507 FLGYAMPDGAAPVGAWLPIEAATGSEAELLGRLARFTDDLDGFARRLADAHTPRGWSELF 566

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              L             L    +   L ++ + + E  +     A      +   +D   
Sbjct: 567 ADTLARFFDSGAAYADALAGVRD--ALDAMLAAMTEGAADEALPAAVVRAGLAAALDD-- 622

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                     +        R L +  + L G+++GV P     + F    +   L  +  
Sbjct: 623 PARGGVPWGGVTFSSLTSLRGLPYRIVCLLGMDDGVLPSLARADEFDLMAVLPKLGDRQR 682

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
                    D  +A   R LI        +   +    L   L+              + 
Sbjct: 683 RDDERNLFLDLLLAARDRLLIAYTGRSIRDNAPLPPAALVDELLDHLALVTAGPNAAPEA 742

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                R          +      P           + +  L+    +    R       P
Sbjct: 743 VDAARRAFIVEHPLQPFAAAYFRPDSTMASYDAERAALASLLAGDASRDGPREQPFFAQP 802

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
              +  +    G           +            ++     +                
Sbjct: 803 LPAEPAEPVPFGE-----FERFWRHPARALLRARLGIVLADAQAELLDTEPFALDFAGSD 857

Query: 858 HLFHKISHSFLEHEEKIQSS 877
            L  ++    +E +E     
Sbjct: 858 ALAERVLPLLIESDEAAAHD 877


>gi|77461864|ref|YP_351371.1| DNA-dependent helicase II [Pseudomonas fluorescens Pf0-1]
 gi|77385867|gb|ABA77380.1| DNA helicase II [Pseudomonas fluorescens Pf0-1]
          Length = 727

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 64/703 (9%), Positives = 159/703 (22%), Gaps = 153/703 (21%)

Query: 105 NIQRLLELARL------ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
            + R L LA        +L+ R      +++  P S LS+  +   A  +   +  ++  
Sbjct: 23  PVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRHRIEQLLG- 81

Query: 159 IETEEKKWEDLHALKNEKYGMWWL---------------------LAADFLKIASKYWTE 197
           I          H L +      W                           L +  + W  
Sbjct: 82  INPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDDQQRLVKRVIRELGLDEQRWPA 141

Query: 198 RLVE----------------------------------------LNASSPVGYQIALMRA 217
           R  +                                                  +  +  
Sbjct: 142 RQAQWFINGQKDEGLRPQHIQASGDLFLATMRGIYEAYEAACQRAGVIDFSELLLRALDL 201

Query: 218 EAEHLMKG-----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
             +H             I++     +       +  +    +  +V+   D       W 
Sbjct: 202 WRDHPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLGKGGDSLMVV--GDDDQSIYGWR 259

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++ +  SS+                             +V+  +       +    
Sbjct: 260 GAKIENIHQYSSDFPD--------------------------SVTIRLEQNYRSTAGILK 293

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             +     NT  L  ++         + L  A NE +EA  +   +  +L     +   A
Sbjct: 294 AANALIANNTGRLGKELWTDGGDGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIA 353

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +R ++  L R  I   I  G             + L  +    +  A+  ++
Sbjct: 354 ILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVI 413

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P                               +  ++        +            
Sbjct: 414 NVP-----------------------ARGIGEKTVEAIRDHARHSDVSMWEAMGQLVANK 450

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            L+          ++ I            +  +           + +     +      +
Sbjct: 451 GLTGRAAGALGAFIELIENLAAKCAEMPLHLMTQT-------VIEQSGLIAYHEAEKGEK 503

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
               +   EE  + +  F    E               +             E   ++ +
Sbjct: 504 GQARVENLEELVSAARNFENTEEDE-----ELTPLAAFLGHASLEAGDTQADEHEDSIQL 558

Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
           +    ++ L F  + L G+ EG++P                ++L+   +   +    +  
Sbjct: 559 MTLHSAKGLEFPYVFLVGMEEGLFP--------------HKMSLEEPGRLEEERRLAYVG 604

Query: 691 ANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                  L+ T +       +     + R +          ++
Sbjct: 605 ITRAMQNLVMTYAETRRLYGSETYNKVSRFVREVPKGLIQEVR 647


>gi|291551268|emb|CBL27530.1| Superfamily I DNA and RNA helicases [Ruminococcus torques L2-14]
          Length = 954

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/344 (12%), Positives = 99/344 (28%), Gaps = 42/344 (12%)

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            I     + +   S  +  L   +S+ + F  + +  L+             ++ V +  
Sbjct: 572 GISEYEDEAEYAPSGCVSFLTIHQSKGMEFPIVFVDSLS---NVPRKTYKDLMTEVEEKY 628

Query: 672 LNLKTAEKYIGQAAHDFEMA-----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
            +    E Y      DF        +  ++L+       +      S++ + +       
Sbjct: 629 FHRPAFEPYDQTKYFDFWRLYYTAFSRAQNLLVLTC---DENKRTPSQYFRDIY------ 679

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
             D ++       D +     + K+ + K         +     +  E   L    Y  Y
Sbjct: 680 --DEVQSVDSDKFDISEFSFQSVKKVNLK------NSFSFTSHITVYETCAL---QYKFY 728

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK-RINKNTPEINHLMKQIIDSHFEK 845
                    +       +    GTL H  I ++ +     +     N  +    +S++  
Sbjct: 729 -------KELEFMPVRQNAMMFGTLVHETIEDIHRAAIRGEVDKITNDNIATWFESNYNS 781

Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
                H  +         + S +E   +               +++      + G  D +
Sbjct: 782 LVKSEHTYLAEPQR--NTALSQVERYAERMDGKWASVQQAEVNVSLVKEDYIIDGKIDLV 839

Query: 906 DLLKSGFVDITDYKTGDNP---KKETAQKLIDPQLSLEAAALKA 946
                G V+I D+K+   P   K     +    QL + A  ++ 
Sbjct: 840 -KGVDGTVEIVDFKSERKPDMIKMRERLEHYRRQLQIYAYLIEQ 882


>gi|226228583|ref|YP_002762689.1| exodeoxyribonuclease V gamma subunit [Gemmatimonas aurantiaca T-27]
 gi|226091774|dbj|BAH40219.1| exodeoxyribonuclease V gamma subunit [Gemmatimonas aurantiaca T-27]
          Length = 1101

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 89/934 (9%), Positives = 216/934 (23%), Gaps = 99/934 (10%)

Query: 49  IYVPTKRAIQELRSEFIEITGKKSTI-LPIIKSL-GDVVEEKFTADLLLSYNLNPPVSN- 105
           + V +    + +R +     G  +++ LP   +    + E         +    P +   
Sbjct: 38  VVVQSLGMERWVRQQLARRRGCAASLQLPFPAAFCRKLAESLAGIGGPGNETDAPTLDKR 97

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            +      RL  +  ++         P         PA    LA+ ++   D        
Sbjct: 98  FEEEALTWRLFALLSDEDMLADAVYAPLRAFLEQADPAKRYGLARRVSARFDEYRLYRPD 157

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIAS--------KYWTERLVELNASSPVGYQIALMRA 217
                 L   + G    +   F   A           W + L          + +  +  
Sbjct: 158 M-----LLAWEAGGHASVEGPFDTAAENPHAAWQCALWQQVLQGERPMHFARWFLHTIER 212

Query: 218 EAEHLMKG--TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
             +  ++       + + G +   P   RL+  V+        +                
Sbjct: 213 LEQAAIRPVGLPDRLSVFGISTLPPLFVRLLKAVSRFAAVRFFVLVPADPQLV------- 265

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                   S    +    ++  +LL  L                 + ++ + ++  +   
Sbjct: 266 ------GRSPNPLTAQFGHASQELLTLLGAN--------EPGGSRHVQAAMPAEDSVLHH 311

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSAL 391
                    L      +      V++    +   E   +   L  +   N         +
Sbjct: 312 LQRALRGSELTPTACLVSPTDRSVSVHICHSPLREMEVLRDQLLDAFAVNPALRPHDVLV 371

Query: 392 ITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
           +  D  L   +   +       +R  I   ++       +     L  LL  +       
Sbjct: 372 MVPDVELYAPLAEVVFGGAMSESRPRIPFRVADRALARESAPLQALELLLQLVSSRLGVS 431

Query: 445 AIATLVKHPLAKF----------GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            +  L+  P  +                              R ++         S  L 
Sbjct: 432 DVLHLLSVPSVRRRVGVTPAQVEQLTGWVQQAGIRWGWDADDRVSRFGVPSFVENSWRLG 491

Query: 495 RIATQKNNTHVPHWQSRL-----------SEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
                      P                   E   + V  VD + + +  L   +     
Sbjct: 492 LDRLMAGYAMGPVDVLVEGHVPVAGDLVGDAELLGVFVRWVDDLERHLMRLREARPLSTW 551

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
           +     +  W  +     +   + +  +      E  G        +        +    
Sbjct: 552 STVLAEVFAWAVVPEGSAEQATMAQIAEAMQALREPSGAPRQRRLRE-AHDVEDPEVAFE 610

Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
              D I   +D +           L I      R +    + + GL++  +P+   +  F
Sbjct: 611 VVRDWILAALDSDDHATGFLTG-GLTICAMKPMRAIPHRVIAMLGLDDRSYPRRERRPAF 669

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
                   +  +       Q   D  +      L  +   R        +  +    +L 
Sbjct: 670 DLIGSARRVGDRDPRTDDRQLVLD-TLLCAEDRLHLSYVGRSETNNAEIAPSIVVAELLQ 728

Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                 +   +    L             ++        L +     + S          
Sbjct: 729 YLQRMVHTVDKAPHPLLRVEHRLQPFSTAYFVPTATDTALFSFDDVLAASVRDVTERRKA 788

Query: 784 AVYARR---------ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
             +  R         ++ LD +     +P +       H  + +      +     ++ L
Sbjct: 789 PPFVARAVTPLHTEGVIALDDLMLAWSNPSQLHAERTLHLSLRDHRDALDDVEPTVVDAL 848

Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHK--------ISHSFLEHEEKI-----QSSIEKI 881
           ++  +      E L    +                 +  ++ +   +      Q   +  
Sbjct: 849 LRTRLQQRLLNEVLHGAGERGATARLSASGELPPGPLGAAWQQRLAQQVDPLLQRVGQPR 908

Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
           F+  P  + +   G  L G  D           +
Sbjct: 909 FLE-PLTVDLRGHGWQLVGRLD--YQHAEEQWRV 939


>gi|237739799|ref|ZP_04570280.1| DNA helicase II [Fusobacterium sp. 2_1_31]
 gi|229423407|gb|EEO38454.1| DNA helicase II [Fusobacterium sp. 2_1_31]
          Length = 929

 Score = 66.5 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 66/423 (15%), Positives = 136/423 (32%), Gaps = 56/423 (13%)

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
            +  S +K     ++DI+      E    +   +  +  L   +S+ L F  +I+  LN  
Sbjct: 538  DDFSVVKYFFTGYLDILKESRVDEIFSEEDYPNECIPFLTIHQSKGLEFPVVIVFSLNSK 597

Query: 653  VWP---KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
                   + ++   + R++ S   L   +K        F +A      +   S  E  I 
Sbjct: 598  PNRYEDDDISRQTSIDRLINSSSKLSENDKEKFDFYRKFYVAFSRAKNLLVLSSYEMGIS 657

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
                 +   +  +    F  N              LD  TK             + +   
Sbjct: 658  ENFKPFFYSIRGVNSLQFDINEVN-----------LDEVTK------------KDERKIL 694

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-NT 828
               ++I    + P   Y      +    +        + G + H  I  + K  + K N 
Sbjct: 695  SYTTDIAPYRHCPMKYYL-----VREKEYSTFSKKIFNLGIITHKAIEHINKLFLQKKNP 749

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
               +  ++ ++ + ++ +N+    +         I   ++E E+     I+K+      +
Sbjct: 750  LFDDEYIENLLKNIYKFQNIDLDDN---FERIMSIVKKYIEDEKDNFEYIKKVEA-SEFR 805

Query: 889  MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
            +        L G  D I   ++  + I D+KTG   +          QLSL    L+   
Sbjct: 806  IE---DDYILYGQIDLILEDEN-EIQIIDFKTGKYNEL-EYSSNYRQQLSLYKLLLQKKY 860

Query: 949  FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN---GE 1005
               I       L+Y+        +     K+    DE  E+  KN+ +    + +    +
Sbjct: 861  DKDIK----TYLYYL--------EEDEPKKEILITDEELEEDFKNINKTTQDILDNKFPK 908

Query: 1006 QPF 1008
             P+
Sbjct: 909  IPY 911


>gi|257793016|ref|YP_003186415.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479708|gb|ACV60026.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 706

 Score = 66.5 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/487 (10%), Positives = 124/487 (25%), Gaps = 76/487 (15%)

Query: 51  VPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-LNPPVSNIQRL 109
             T++A QE+    +   G++   +  I ++  V     T +L   +  L+ P   I+R+
Sbjct: 174 TFTRKAAQEMTDRLLAAVGERGKAV-TIGTIHSVAYRMVTPELGEDWRVLSDPTWMIERV 232

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
           LE                     E     P      + L +                   
Sbjct: 233 LE---------------------EPSGKNPHGVGPVMKLGE---------AISAIAKAKA 262

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG------YQIALMRAEAEHLM 223
            AL   +           L      +     E                     A A+   
Sbjct: 263 DALGPHQVSDP-------LTKVYAAYETLKAERKTLDFEDMILHAIRLFRTDEAFAKRW- 314

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
           +     +++     +  A    +  +    N   V+   D       +            
Sbjct: 315 RQRWRYVMVDEFQDTNTAQWLFLLELVKAHNNLFVV--GDDWQSIYYFRGARPDLMKEFL 372

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                +               +  E   R  ++  ++  R + ++     P       + 
Sbjct: 373 RRFPDAK-------------RVTLETNYRSHDLIVDVGRRIIRLNDGHQLPKRVVAHRSM 419

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLAR 400
                            ++   ++ EEA  +A  L+    E+       A++      +R
Sbjct: 420 PEGAIA----------QIVTVRSDLEEARFVAQELQRLRKEHGVSWSDCAVLYRTNIQSR 469

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
             +  L    I   +        +    I+   L      +D      L+  P       
Sbjct: 470 LFEEALADADIPYHVVGDKHFYESPDVKIILDYLRTTQDTSDPTVWGHLLNRPKRYIPID 529

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
             +    ++      +   K    +  + +L      ++     V +    + ++D++  
Sbjct: 530 VVH--EVQHGGWEAVVAHPKCRAFVTTIDTLRRIEEPSKAIQWLVDNHPGLVRQQDEDEP 587

Query: 521 VLLVDHI 527
           +  VD +
Sbjct: 588 IKWVDSL 594


>gi|149922813|ref|ZP_01911237.1| hypothetical protein PPSIR1_33616 [Plesiocystis pacifica SIR-1]
 gi|149816356|gb|EDM75858.1| hypothetical protein PPSIR1_33616 [Plesiocystis pacifica SIR-1]
          Length = 1071

 Score = 66.5 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 99/960 (10%), Positives = 216/960 (22%), Gaps = 112/960 (11%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
           V + VP   A + L+S  +E  G    +   I  L  ++ E   A           ++ +
Sbjct: 23  VLVLVPHGGAARWLQSLLVEALGV--VVGARILDLDALLRESHRALAGDELPTLDALAEV 80

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
           +R L             P+       + P          + + ++LA             
Sbjct: 81  RRALL----------ADPERRYAAIADQPSYQREVLRTFVAIERSLAA--------GAGL 122

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
                   +            L  A + + E +   +A         L+           
Sbjct: 123 PAKPEAGPDTGPEAGGAWDRALLDAFERFREAVASEDAEWRGRDLGRLLAGHPRVPTLRP 182

Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
                      + P T R    +               H        +T +         
Sbjct: 183 GRNAAKIAIGFAPPTTPRWQEVLLRTLGFERWTLPTPTHTAADRRRPLTLRLGCA----- 237

Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                P+  +A +  +L  +      L            +              +    +
Sbjct: 238 ----GPEAEIAAVARWLRREPRAAIVLAPAEAIPRWVVRLRH---RDVPVRAHVDLPAAQ 290

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406
                  +    +         + A++ A   R+           +  D  +     +  
Sbjct: 291 TAAAQAVRALLRILGGGEHQREDAAVARADLERVLFGRALHVFGPVAEDLGIEFPADVRP 350

Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
                         +  +  ++ L +  +A                   +          
Sbjct: 351 GDLHQAWANQRASAVRLSTLAARLEARASASEARASTEERGQRFGWTAEELETRRARERD 410

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
           A   L          +            R         +  W +             +  
Sbjct: 411 AHRLLAGAIHTLESLAELGRTGDLSPDRRDLAAGLRQLLIDWGAGKRAAVLGTDGPELAA 470

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           +   +  L   + +       L  +           +  +D    +  L +     +   
Sbjct: 471 VRVLLDYLSRARGSFARLSAGLDHALSFARVGHWEHDRAVDGPPAVWILDY--ATASALR 528

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
                +E       +A     I          +       T   L  L       +T   
Sbjct: 529 PLPIGVEAVVLTGLDAHPRPPIARGPASEGLRESLGLTLDTQRFLSQLRHLDALAETPRT 588

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
             L    W   +         +    +  + E+ +G  A            I      E 
Sbjct: 589 V-LASWRWRAGSGARRPPGAWIAGRQHEGSPERQVGVDA------------IALPPEVEA 635

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                 S  ++R L+    +     + R        R L   T +     P   P     
Sbjct: 636 GAKLAPSAPIERALLDWSDEPGLAERVRA-TVSHEARALGPHTGELGVAVPPTRP----- 689

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK--DPDRTDRGTLFHNIITELIKKRI 824
              YS S +++    PY  +  R+L L               ++G + H  +      R+
Sbjct: 690 ---YSASALQRFAELPYRYFIERVLGLREPATGDGTSALLAREQGAVLHRALESAFAPRL 746

Query: 825 NKNT-------------PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS----HSF 867
                            PE+       ++  + +       + IW   + + +      +
Sbjct: 747 AAGDVNGNPWLNLAVAGPELLQATLDALEEGYRRRAEHGQAEAIWTGEYQRWAVELEAWW 806

Query: 868 LEHEEKIQS--------SIEKIFVN------------------------IPAKMAIESIG 895
               +++ +          +   +                          P ++ +    
Sbjct: 807 RAWYQRLCAAMGTAKPLRGKPEAIETVPGMVLCGVEWSPGDDGSDADALAPFELELGEAR 866

Query: 896 IHLTGFADRIDLLKS-GFVDITDYKTGDN----PKKETAQKLIDPQLSLEAAALKAGSFS 950
           + L    DRI+       + I DYKTG            +     QL L   A+   + +
Sbjct: 867 LPLIAAVDRIEANPLVQELTICDYKTGRPQWPASILAELRAGTHLQLPLYGLAVDQVARA 926


>gi|157148363|ref|YP_001455682.1| exonuclease V subunit beta [Citrobacter koseri ATCC BAA-895]
 gi|157085568|gb|ABV15246.1| hypothetical protein CKO_04185 [Citrobacter koseri ATCC BAA-895]
          Length = 1181

 Score = 66.5 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 93/906 (10%), Positives = 227/906 (25%), Gaps = 96/906 (10%)

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            +   IE    +   +  L           A   ++       +R  EL     +      
Sbjct: 309  LFVAIEELLAEPLTIKDLLIT-------RALAEIRETVAQEKQRRGELGFDDMLSRLDVA 361

Query: 215  MRA----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
            +R+         ++G     +I     + P   R+   +  H     +L   D       
Sbjct: 362  LRSNSGDALASAIRGRFPVAMIDEFQDTDPQQYRIFRRIWRHQPDTALLLIGDPKQAIYA 421

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEMYGRSMVISK 329
            +      +     S  +      Y+L         +          +++    R +  + 
Sbjct: 422  FRGADIFTYMKARSEVSAH----YTLDTNWRSAPGMVNSVNTLFSQMNDAFMFREIPFAP 477

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
                     +R     E +           +    D +   A   A  +R  L   +   
Sbjct: 478  VKSAQKNQSLRFVLNGETQPAMNMWLMEGESCGIGDYQSYMAQVCATQIRDWLKAGQTGD 537

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS--SILTSLLNAIFKLNDFMAIA 447
            AL+ +++        +++    +   +A I  + TL +  S+  S  +++F+  +   + 
Sbjct: 538  ALLVSEKTSRPVRASDISVLVRSRQEAAQIRDALTLLAIPSVYLSNRDSVFETLEAQEML 597

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             +++   A      +   R+  A  ++ L          D  +                 
Sbjct: 598  WILQ---AVMTPERENTLRSAMAASMMGLTAQDIETLNNDENAWDAVVEEFDGYRQIWHK 654

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                        A  + +++L             + +          +     ++ +   
Sbjct: 655  RGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGSQLESEHALVRWLSQH 714

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKI--IETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                  N   ++          KI  I     ++   +    I    +  +         
Sbjct: 715  ILEPDSNAASQQLRLESDKHLVKIVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDRNSF 774

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS---RVMQSDLNLKTAEKYIG 682
              +  L   E  +   +   L      ++   T      S     +      K  +  + 
Sbjct: 775  DAVLDLSHAEESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVH 834

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
            Q+A    +              +   P  A+     +  L G D                
Sbjct: 835  QSALGRLL--------------QKGEPKDAAGLRACIDALCGEDITCRTPAEPDSERWQV 880

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTY------SFSEIKQLINDPYAVYARRILKLDFI 796
             +           R  P         +       S ++      D  A     +++   +
Sbjct: 881  TEASRAALSARALRRMPADNWRVTSYSGLQQQGHSVAQDLIPRLDVDAAGVGDVVEEPEL 940

Query: 797  PHFKKDPDRTDRGTLFHNIITE----------LIKKRINKNTPEINHL--MKQIIDSHFE 844
               +     +  GT  H++  +           +++++     + +    + Q +D+  +
Sbjct: 941  TPHQFPRGASP-GTFLHSLFEDLDFTQPVDPAWVREKLELGGYDAHWEPVLTQWLDAVLQ 999

Query: 845  KENLPPHI-------------DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
                   +                +  +   +  S L+   +    +            +
Sbjct: 1000 APLTERGVSLRHLSAREKQVEMAFYLPIAQPLIASQLDALIRRFDPLS------AGCPPL 1053

Query: 892  ESIGIH--LTGFADRIDLLKSGFVDITDYK-----------TGDNPKKETAQKLIDPQLS 938
            + + +   L GF D +   + G   + DYK           T +           D Q  
Sbjct: 1054 DFMQVRGMLKGFIDLVFRHE-GRYYLLDYKSNWLGEDSTAYTQEAMASAMQAHRYDLQYQ 1112

Query: 939  LEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            L   AL      +I      R    + Y+ L+   +              EL     +  
Sbjct: 1113 LYTLALHRYLRHRIADYDYERHFGGVIYLFLRGVDREYPRQGIFSTRPDGELIALMDEMF 1172

Query: 995  IEIVTL 1000
              +V  
Sbjct: 1173 AGVVAE 1178


>gi|194333977|ref|YP_002015837.1| hypothetical protein Paes_1161 [Prosthecochloris aestuarii DSM 271]
 gi|194311795|gb|ACF46190.1| conserved hypothetical protein [Prosthecochloris aestuarii DSM 271]
          Length = 878

 Score = 66.5 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 71/255 (27%), Gaps = 28/255 (10%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
            +++S + +++LI DP   +     KL               G LFH ++ +L       +
Sbjct: 591  QSFSPTSLEKLIADPCQWFLEYEAKLSPSKVLDVSDGPRLYGLLFHRMVQKLCPVLHGGS 650

Query: 828  TPEINHLMKQIIDSHFE--------------KENLPPHIDIIWRHLFHKISHSFLEHEEK 873
                   +    D  F               +      + +  RH  H +    +     
Sbjct: 651  --VTMSSIDAWFDECFAILVKQEGAVLLMEGRNADLEGLRLRIRHALHHLVPVLV----- 703

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-AQKL 932
             +     I                L G+ D +         + D K G   ++       
Sbjct: 704  -RQGARSIVAEQRLDGRFAGGN--LYGYIDILLHDDEARPSVIDMKWGGGTRRRQSLAAG 760

Query: 933  IDPQLSLEAAALKA--GSFSQIDCRKVANLFYIRLKQK-FKIDCITNDKKKYSADELSEK 989
               QL + A  +    G +  +     +    +      F        +   SA  L E+
Sbjct: 761  THLQLLVYAWLVYQKTGRWPALAYFIASRAELLADTAGFFVAGNAVRTENDESAALLWER 820

Query: 990  SLKNLIEIVTLLQNG 1004
             L +    +  ++ G
Sbjct: 821  VLASFTWRMEQIEAG 835


>gi|326328710|ref|ZP_08195049.1| exodeoxyribonuclease V, gamma subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325953520|gb|EGD45521.1| exodeoxyribonuclease V, gamma subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 1121

 Score = 66.5 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 82/896 (9%), Positives = 211/896 (23%), Gaps = 53/896 (5%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
             LL  +L E       +P   A+  + VP +   + L        G        I +  
Sbjct: 11  TDLLADSLGELLSVPLGDP--FATEVVVVPARGVERWLSQRLAHRLGAAEGRSDGICAGV 68

Query: 83  DVVE-EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
           D        A++  + + +P          LA +           +         +    
Sbjct: 69  DFRTPWSLFAEIAGTGDEDPWAPESLTWPVLAAIDASLDEPWARPLAQHLGHGDATEEGV 128

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLV 200
                 LA             +++   +                A+ L      W     
Sbjct: 129 RRRGRRLALARRLARLFAAYADQRPAVVADWSAGRDKDGLGAEIAEDLAWQPPLWRAVAG 188

Query: 201 ELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
            +   +P+  Q A +    +          + + G T        L++ +  H    + L
Sbjct: 189 LVGGPTPMERQAATVAKLKKAPGEFELPERVSLFGHTRLSATDVELVAALGEHREVHLWL 248

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
           P     +  A+       +     S+         +L +    L  +R      G    +
Sbjct: 249 PHPSEALWEALAGLDGTVARTADRSHDAVGHPLLATLGRDTREL--QRSLNGFSGEAITD 306

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
               +      +L  D       +     +    +    + +     E  +   +   L 
Sbjct: 307 GVFDTDGRLLGWLQADIRGNTVGEAAARVLAPEDR---SIQVHACHGEARQVEVLREVLL 363

Query: 380 MSLDEN----KKKSALITADRNLARRVKLEL------------TRFGINIDISAGIPLST 423
             L+++     +   ++  D      +                    + + ++      T
Sbjct: 364 GLLEDDPTLEPRDVLVMCPDIETFAPLIEAGFGLGEMIGETGHPAHRLRVKLADRSLTRT 423

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVK----HPLAKFGFPEKYLSRAKNALELVALRGN 479
                + T LL+          +  L                            +    +
Sbjct: 424 NPLLDVATRLLDLAGGRAGVSDVLDLAHLDPVRRRFGLNDDALEQLEDWAKDAGIRWGFD 483

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP---LVT 536
               +   L++ V +      +        S  S    +  + L D     +        
Sbjct: 484 AEHREPFGLETYVANTWRFGMDRILTGVAMSEDSATWLDTTLPLDDVGSGSVELAGKFAE 543

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                      L+     +  +  ++           N  ++    T      +    G 
Sbjct: 544 LVDRLEQVTDELAGVHPLEHWLKVIEEGVAALTSVSANDEWQSGQVTRELSRVRDAARGH 603

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
            +    +  +  +              ++ TL +   +  R +    + L G+++GV+P+
Sbjct: 604 EVDELRLPDVRALLGARLAGRATRANFRTGTLTVSTLVPMRSVPHRVVCLLGMDDGVFPR 663

Query: 657 ---NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
                  +         + +L++ ++ +   A            +       N       
Sbjct: 664 VGITDGDDLLARDPQTGERDLRSEDRQLFLDA-----LLAATETLVVTYTGANEYSGQPR 718

Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
                L  L        +   G+   +        T +   +   P              
Sbjct: 719 PPAVPLGELLDALDATAVSADGRPVKEVV------TTRHPLQPFDPRNLTPGALVAGHSF 772

Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL------FHNIITELIKKRINKN 827
              +             ++   +      P      TL      +   +    + R+   
Sbjct: 773 SFDRSAEAGAVAAVSDRVEPPELLPAPLMPTAAGDVTLEELLAFYRGPVRAFFRDRLELA 832

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
            P  +  + + +    +        D +   L   +S      +E  +  +   ++
Sbjct: 833 LPRDDDPLSEALPVELDGLGQWSVGDRLLHDLLAGMSEEQATQQEWRRGVLPPKWL 888


>gi|206895197|ref|YP_002247357.1| hypothetical protein COPRO5265_1039 [Coprothermobacter proteolyticus
            DSM 5265]
 gi|206737814|gb|ACI16892.1| hypothetical protein COPRO5265_1039 [Coprothermobacter proteolyticus
            DSM 5265]
          Length = 293

 Score = 66.5 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 67/246 (27%), Gaps = 34/246 (13%)

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             P   Y     +L               G+  H +I  ++             L   ++ 
Sbjct: 14   CPL--YLDYSAQL----PIATTGVADQFGSAVHELIYRMLSGDHKGLFDTEEDLAWSVLL 67

Query: 841  SHFEKENLPPHIDIIWRHLF--HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
              F         + + + +    + +  F E+              +  +    S  + +
Sbjct: 68   ESFPGAVESSFTEQVVKEMLNMARAAKRFAENYN-------PSQFEVKFEYGFGSDDMLV 120

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
             G AD +     G   + D+KTG       A+     Q+ + A  L      Q+      
Sbjct: 121  IGIADAL-----GENLVLDWKTGS----FMAESHRQ-QVKIYATMLWRLGLLQLPA--TL 168

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018
             + Y+           +N  +   A+ +       + + +     G +      R+S   
Sbjct: 169  GVVYLGKAGVEGSQAESNVFQFSEAEAVV--VEDFVQQFLQQYSLGNR----RPRIS-DH 221

Query: 1019 NIQSEY 1024
                 Y
Sbjct: 222  CSFCPY 227


>gi|50083654|ref|YP_045164.1| exonuclease V beta [Acinetobacter sp. ADP1]
 gi|49529630|emb|CAG67342.1| exonuclease V, beta chain [Acinetobacter sp. ADP1]
          Length = 1234

 Score = 66.5 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 93/882 (10%), Positives = 219/882 (24%), Gaps = 119/882 (13%)

Query: 179  MWWLLAADFLK---------IASKYWTERLVELNASSPVGYQIALMRAEAEHL------- 222
              +    + L             +   + L E   ++       L  A            
Sbjct: 344  QHYQAQFEQLDHALKAYLCIEVKQRLPQVLQEKGETTFSQQISTLAEALKGEQGQRFAIF 403

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA---IVLPGLDCHIPTAIWNTITEKST 279
            ++     I++     +      +++++  HP       ++   D       +        
Sbjct: 404  VQARYPLILVDEFQDTNQDQDDMLASIWRHPQRYQKGCMIMVGDRKQAIYGFRGGD---M 460

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +      H Q    K    L      VK L  V + ++ R     +  +       
Sbjct: 461  LTFLNAYQDILHKQGREYK----LSQNHRSVKPLVEVVDALFQRQPNFGEQVIYDPIQAG 516

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--------------- 384
                        +      +  I   ++  EA  +A  +R  L++               
Sbjct: 517  SRAHPALMDRAQVNTAP--LRWIMLQDKASEAEQVAWKIRALLNQASSGELYLKDGSVHH 574

Query: 385  --NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                   A+++ +      V+  L    I ++  +   +   + +  + + L AI    D
Sbjct: 575  SIIADDIAVLSKNHKGLDDVQAALEYLNIKVNRPSRRSVFDHVVAHDVGAFLTAILFPYD 634

Query: 443  FMAIATLVKHPLAKFGF--------------PEKYLSRAKNALELV------ALRGNKNS 482
               +   +   L  F                           + L         RG    
Sbjct: 635  EAKVKRALLSRLMGFDLERLYQLEQSPVGLSDYMNQLDGLREIWLHQGFLPAWQRGLNIF 694

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                +L +           N            E  + A  L    L+ +      +    
Sbjct: 695  QVWQNLGAKHSRENERAVVNLRHLSELLSKHSEQYQGAQNLYHWYLKQLRSPSEREWELE 754

Query: 543  STCGNLSISDWTKLTV-TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                + +      +     L+   +        L  +   K L+   ++I++  +     
Sbjct: 755  RKLSSDAGVQLMTIHQSKGLEFKIVFLLGADKPLRDQN--KDLNFSRAEILDESTGQMQT 812

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                       +  E +    E+ +T          L      +   L++       A  
Sbjct: 813  KRVIAIADKTQLTPEAIIQHTER-ATAEQNRIWYVALTRASHRVYAMLHDPQQKSKDALA 871

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL---RENNIPTIASRWLQR 718
             + ++           E  + Q      + + T   I   +    ++   P   + +   
Sbjct: 872  FWKNQDSPFLHEYSIEEALLMQCPEPLTV-HETPQKILIYAAPLPQQRFYPRGKTSFSYL 930

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
               L     + +     Q   +       TT    Y +    P    +      +     
Sbjct: 931  AQHLKPRVSYADTLVSMQTRPEQAEDERDTTTSIQYSQAAIQPIAWIKQNFPKGTLAGNF 990

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRT---DRGTLFHNIITELIKKRINKNTPEINHLM 835
            +++ +       +  +    +  +  R    D G+L+  +    I      N  E  + +
Sbjct: 991  LHEIFEH-----INFNQTEEWITEIRRRFKNDYGSLWEMLYPVYIDAFPELNGDE--NRL 1043

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFH------------KISHSFLEHEEKIQSSIEKIFV 883
             Q +    +     P                        +S   L         I+++F+
Sbjct: 1044 YQWLADWLDDVLKTPLHQDFQLKQLQSGQFLSECPFYLALSDRVLAMRR-----IQQLFI 1098

Query: 884  NIPAKMA--IESIGIH-LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID------ 934
                +M   +++     L G  D +         I DYK+      +T    +       
Sbjct: 1099 EYHIEMPEFLDAYSARYLNGSIDLMYFDG-QRFHIADYKSNFLGTDQTHYDGLAIRENMT 1157

Query: 935  -----PQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                  Q +L   AL      +++       +    Y+ L+ 
Sbjct: 1158 HSSYWLQAALYLVALHRYLKVKLEHYEIAEHLGGATYLYLRG 1199


>gi|270284111|ref|ZP_05965559.2| conserved hypothetical protein [Bifidobacterium gallicum DSM 20093]
 gi|270277114|gb|EFA22968.1| conserved hypothetical protein [Bifidobacterium gallicum DSM 20093]
          Length = 1525

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 59/486 (12%), Positives = 124/486 (25%), Gaps = 22/486 (4%)

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            + D+ E+E         L  E+    W LA    +  +              P     A
Sbjct: 252 GLTDVQESEYLDAVRDTGLTGERLRTQWHLAWALRREYASEVARAFPHEYRLDPSELLGA 311

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
             R   +         +I+        A    +  +A+   G  +    +       +  
Sbjct: 312 AARLVRDQAEPPMLRELIMDDVQDLTLAGLAFLQALAS--RGVRLTLAGNPDESVQTFRG 369

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE---------MYGRS 324
              +       +     H Q +  + L            L  V++              +
Sbjct: 370 SYPEYVFRVLRDQM---HAQVTHLQPLRHDSSPSVTPTMLDTVASRVSLSIEAIEPTDTA 426

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
           M      LP          +       +   F  +    A  E +  +    +L +    
Sbjct: 427 MPHRLGKLPAHEGAWPIRTLDNTDARLLDGTFKGLVYRSAQEEEDNVVWRIKSLHLDHAV 486

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDF 443
                A+I  D    R +   L R G+ +  S+    L        L +L+      N  
Sbjct: 487 PWNNIAVIMHDNAAIRTLGARLRRDGVPVRFSSVTRALIEEPFVQALFALIELAQMRNAG 546

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
           +A + + +     +         A   L+       +          L     A Q  ++
Sbjct: 547 IARSGMGERQAVAWVASRVRSIAASALLQP----AGRAQDTADQPLHLETIETAMQAIDS 602

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW-TKLTVTCLQ 562
                +   +  D  L   L +         V      +     L+I +     +    +
Sbjct: 603 LSSVVKHAPAATDSTLLTSLEEQWQALHADFVASARQHHDDFPTLTIDNSNFDESARNEE 662

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
            +          L  +   K L +L  ++I   S           ++  +      +P++
Sbjct: 663 PLSFGSDAMTLMLMHDGAPKLLDAL--QLIMGQSRTIMMYRRLWSLVHTIAQQFATQPRM 720

Query: 623 EKSSTL 628
             +  L
Sbjct: 721 MPADAL 726



 Score = 45.3 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 892  ESIGIHLTGFADRIDLL--KSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
            + + I LTG  DR +      G   + I DYKTG         +  D QL     
Sbjct: 1308 QGLRIELTGRIDREEWREQPDGTHTLRIVDYKTGHRRTGPEQFQ--DLQLICYQL 1360


>gi|294668071|ref|ZP_06733188.1| exodeoxyribonuclease V gamma chain [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292601862|gb|EFF45692.1| exodeoxyribonuclease V gamma chain [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1080

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 73/692 (10%), Positives = 171/692 (24%), Gaps = 83/692 (11%)

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
            W         + +  +         L +              LG+       R M    
Sbjct: 127 GWGAAGRDFMALGAIRSGAPAAENARLRRTRLSSGRPPLADGGLGDSL----LRHMQSDL 182

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----- 384
                  +D         ++P +      + +        E   +   LR  LD+     
Sbjct: 183 FHRRGPAADA--------RLPAVNLHDPSLQVHACHTRLRELQVLHDQLRALLDDARFDP 234

Query: 385 --NKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
               ++ A+++ + +        +         +   ++   PL++   + +  +LL   
Sbjct: 235 PLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYALADASPLASEPLAEVFLTLLGLP 294

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKY--------LSRAKNALELVALRGNKNSYDIMDLK 489
                   I  L+                        A  A   +     +      D  
Sbjct: 295 IARFGLHEILDLLASAPIAEAAGLDEAGLERLRNWLHAAGARWGLDAAHRRQHQAPGDDA 354

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAV-LLVDHILQCITPLVTYKTNKNSTCGNL 548
                 +            +               +  +   +  L   + ++ +    +
Sbjct: 355 YTWRFALDRLLLGHASGADEDIDGVAPWPQLEGSALAALDTLLRLLRVLERHQAALAEAM 414

Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
           +  +W +  +  L+ +              +  +TL   F++             E +  
Sbjct: 415 TPVEWRERLLGLLETLMPTTPTAPRAQRALDRLRTLIDQFARDAVRAEYAGKVPAEVVRA 474

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF----- 663
               + GE+       +  +     +  RLL F  + L G+N+G +P+            
Sbjct: 475 HFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRVICLLGMNDGDFPRRDPAAGLNRLTA 534

Query: 664 -LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
            L    +   +  T E         F  A    +L Y  +   +      S  +  LL  
Sbjct: 535 ELGTERRRHGDRSTREDDRFLFLQLFASAQEVFYLSYLGADARDGSVREPSVLVSELLAS 594

Query: 723 GGTDFFD----------------------------NLKKRGQCYLDWTRKLDYTTKQPHY 754
                                                 +R      W   +D    Q   
Sbjct: 595 AAQYHAASNALDTLVVRHPLQPFAAAAFGALGDDGADPRRFSYRRQWRPAVDSLVGQRQP 654

Query: 755 KRPKPFPPLEAQPRTYSFS----EIKQLINDPYAVYARRILKLDFIPHFKKDPD-----R 805
             P     L A+      S     +++L+ DP   + R  L +       +D D      
Sbjct: 655 LAPWVAGALPAEEIALPTSMSIDALRRLLTDPAGQFLRHRLGMRLPDPAGEDSDLEPLLA 714

Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS 864
             RG   + +  ++ +  +  +T  +   ++                 +  R       +
Sbjct: 715 PTRGLDQYGLQQQVFEAALAGDTEHLYARLRA---RALLPSGPLGRRQLDERVAQLRPYA 771

Query: 865 HSFLEHEEKIQSSIEKIFV---NIPAKMAIES 893
            +F +   +  +   ++ V    I     +  
Sbjct: 772 DAFRQWRGQSPAQSRRLQVQIGEIELHGRLPG 803


>gi|271500543|ref|YP_003333568.1| exodeoxyribonuclease V subunit beta [Dickeya dadantii Ech586]
 gi|270344098|gb|ACZ76863.1| exodeoxyribonuclease V, beta subunit [Dickeya dadantii Ech586]
          Length = 1230

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 95/990 (9%), Positives = 234/990 (23%), Gaps = 84/990 (8%)

Query: 92   DLLLSYNLNPPVSNIQRLLELARLILIWRNKLP------DIIKDLYPESPLSLPISPANA 145
            +L    N              AR    W +KL       +   D+        P      
Sbjct: 254  ELRDLLNAAVAAKKADGRKLQARYFDPWLDKLQHWASSDETTLDIGTGWTRLTPQGLREC 313

Query: 146  IWLAKNLADI--IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
              +         +  +ET  ++  DL      +              + +    ++   +
Sbjct: 314  WKIPDEAPSHPALRAMETLAQQLSDLPE-PRSQLLRHACRWIHQRFRSEQESRAQMGFQD 372

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTVANHP---NGAIVL 259
              + +   +     E        + P+ +I     + P   R+  T+           ++
Sbjct: 373  LLTRLDGALRGDNGERLAQRIRRQFPVAMIDEFQDTDPLQYRIFDTLYRVATNDPQQGLI 432

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL---------DIKREDV 310
               D       +      +      +T    +   +  +    +           +    
Sbjct: 433  LIGDPKQAIYAFRGADIYTYLRARRDTDGRHYTLGTNFRSTQAMVDAVNQVFMQAENRAN 492

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                 +  +  G + V           D+   +             +D  L  ++  +  
Sbjct: 493  GAGAFLFRQPDGDNPVPFLPVQANGRDDIWVQEGTPAAALTCWTLETDEPLSSSEYRQRM 552

Query: 371  AISIAIALRMSLD-------------------ENKKKSALITADRNLARRVKLELTRFGI 411
            A   A  +   L                    +    + L+   R           R   
Sbjct: 553  AAGCAREMVRLLQLGEQGQAGFVSSDQRWRPVKPGDMAVLVNTGREAMAVRAQLSARGVR 612

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA---KFGFPEKYLSRAK 468
            ++ +S    +  +  +  L   L+A     +   +   +  PL                +
Sbjct: 613  SVYLSDRESVFDSPLAGELHCWLSACADPENDRLLRAALATPLLGLSWQALDRLNHDEQE 672

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                ++     +  +    +  ++   +        +    +  +  D      L+    
Sbjct: 673  WERRVMQFVRYQQCWRQQGVLPMLRRLLWEFDVPRRLLAADNARALTDVLHLSELLQQAS 732

Query: 529  QCITPLVTYKT--NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
              +           +     N           +    V +    K   L +       + 
Sbjct: 733  VHLDGEHALIRYLAEQCQADNPGSDSLKVRLESDADLVKVVTVHKSKGLEYPLVFLPFAC 792

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
             F  +      +K +  +    +  +   E V  + +       L      L      + 
Sbjct: 793  AFRTVSHRDVPLKFHDDDGQPRLELIASDEAVA-RADHERLGEDLRKFYVALTRARYALW 851

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
             G+      + +A    L      +     +   +    H              R+ RE 
Sbjct: 852  LGVAPLKELEKSAPGYLLGAGEPVEAGQLASCLSLWIGPHSQIAPLPESDDAVYRAARET 911

Query: 707  N--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
                       ++R      +     L   GQ             +    ++     P E
Sbjct: 912  PALGQEPPLPDIRRHRWRITSYSGLQLAPEGQYQERRESAAHDAAEVQSARQETFSEPQE 971

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILK--LDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
               R         + + P        L   L++           DR  +   +     ++
Sbjct: 972  TAERLPPLPVGYDMYSFPRGAVPGSFLHGLLEWAGKEGFAALAADRPRVEDQVARRCNRQ 1031

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSFLEHEE--KIQSSIE 879
                  P +   +   ++        P     +     +      +    +    +   +
Sbjct: 1032 GWTPWIPMLTDWLMAQLNQPLALPASPAGTVSLAGLTQYQVEMEFWFALNQVDTQRLDQQ 1091

Query: 880  KIFVNIPAKMAIE----SIGIHLTGFADRIDLLKSGFVDITDYKTG-----------DNP 924
                 +     +     ++   L GF D +   + G   + DYK+             + 
Sbjct: 1092 VSAATLAGAPRVPLMRDALNGMLKGFIDLVFEHQ-GRYYVLDYKSNWLGADAADYDLAHM 1150

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKK 980
             +       D QL+L   AL     S++      R V    Y+ L+              
Sbjct: 1151 ARAMLDHRYDLQLALYLFALHRLLRSRLPDYDYDRHVGGALYLFLRGSQAPGGGV----- 1205

Query: 981  YSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
                  +E+  + LI+ +  L +G+    +
Sbjct: 1206 -----YAERPDRTLIDALDRLFSGDTEVTA 1230


>gi|167569498|ref|ZP_02362372.1| exodeoxyribonuclease V, gamma subunit [Burkholderia oklahomensis
           C6786]
          Length = 1112

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 71/866 (8%), Positives = 187/866 (21%), Gaps = 37/866 (4%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDVAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPV 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDDGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVEL-NASSPVGYQIALM 215
             +W          + +          A D     +  W   L EL ++  P  ++    
Sbjct: 143 RPEWLAQWQEGESIFALEGAPRHGGDAARDDETWQAALWRALLAELSDSGMPPAHRFLRD 202

Query: 216 RAEAEH---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
               +            + +       P    L+  ++   +  I            I  
Sbjct: 203 AGSLDLDIVAHAKWPESVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDIVT 262

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               +S +               LA+       +   +  L   +          + +  
Sbjct: 263 AARAESLDAADQLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYAENPAPT 321

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKK 388
                     ++              + +    +   +   +   L   LD +       
Sbjct: 322 WLARVQNAILELQPEDALGEPPEGRGIEVHVCHSLARQLEVLHDRLLAWLDADPSLAPSD 381

Query: 389 SALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
             +   D   A  +   +           I   I+   P      + +L   L    +  
Sbjct: 382 VLVAMPDLAAAGPLIDAVFGTTSGADAARIPYRITGLPPSQANPVARVLLDWLALPERNV 441

Query: 442 DFMAIATLVKHPLAKFGFP-EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
               +   ++       +  +             A      + D  +  +  +  +    
Sbjct: 442 GAPELIEWLRVDAVAARYGIDAAALETVQTWLAAAGARRGLAPDAPENANTAVPALRHTF 501

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
            +     +      +        +                   T      +      +T 
Sbjct: 502 ADALTRLFLGYAMPDGAAPVSTWLPISGAEGGEAELLGRLARFTDDLDGFAQRIAGDLTP 561

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                                    S     ++      A      ++   ++       
Sbjct: 562 QGWGDAFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAGGAELPAAVVRAGLAAA 621

Query: 621 KIEKS------STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
             + +        +        R L +  + L G+++GV P  T  + F    + + L  
Sbjct: 622 LDDPARGGVPWGGVTFSSLTSLRGLPYRVVCLIGMDDGVLPSLTRADEFDLMAVFAKLGD 681

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
           +           D  +A   R LI        +   +    L   L+             
Sbjct: 682 RQRRDDERNLFLDLLLAARDRLLIAYTGRSIRDNAPLPPAALVDELLDHLATVSAGPDAP 741

Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                   R          +      P         S + + +L+ +     A+      
Sbjct: 742 PDAIDAARRAFVIEHPLQPFSAEYFAPGGTLFTYDASRATLARLLAEGAQAAAQPFFSRP 801

Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                 +     D    + +    L++ R+     +    +    +           +  
Sbjct: 802 LPAEPAEPVAFADFERFWRHPARALLRARLGIALADAQAELVD-TEPFELDYAGSDALAE 860

Query: 855 IWRHLFHKISHSFLEHEEKIQSSIEK 880
               L  + + +         +    
Sbjct: 861 RVLPLLIETADAAAFEHALRVADASP 886


>gi|87124723|ref|ZP_01080571.1| similar to UvrD/REP helicase [Synechococcus sp. RS9917]
 gi|86167602|gb|EAQ68861.1| similar to UvrD/REP helicase [Synechococcus sp. RS9917]
          Length = 1214

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 79/730 (10%), Positives = 178/730 (24%), Gaps = 29/730 (3%)

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
            L+A  P        +A  E L +      +I     + P   RL+ +V       ++L  
Sbjct: 386  LDALDPATQPPDQQQAVVEALRR-RYRVALIDEFQDTDPLQWRLLRSVFVGSEAHLLLMV 444

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
             D       +      +                +       +      +      S    
Sbjct: 445  GDPKQAIYRFRGGDLNTYRRARERADRIDALLVNFRTTAPLMQALNRFMAPGLRHSQLEV 504

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
                  S +    +        +L+               ++    R  A      L   
Sbjct: 505  PALEARSSAEPLSENGSEGPLQLLDLTADGNACSK---TALDEQLPRIVAQIAVDLLHRQ 561

Query: 382  LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                     ++ +    A  ++ +L   G+   + +   +  T  +  L  LL+++    
Sbjct: 562  PSLQPGDLCILVSKHRQAEAMRRQLAASGLPSRLVSQGDVLATAAAEALQRLLDSLANPA 621

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
            D   +  L    L ++   E   +     L+ +A R +  +     L  L+       ++
Sbjct: 622  DGARLRLLACSALMQWSAAELKAAEDNGQLDRLAQRIDALAAQWDHLG-LLGCLAQVMES 680

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
            NT     +      D + +  LV   +  +   +    +         +    +      
Sbjct: 681  NTVASLSERGRFGGDLQQSARLVQDAVHRLGLDLASAADWLRRQRLQPLEALPEERQPHS 740

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA---NAIEWIDIITRLIDGETV 618
                        +     E   +   +       +       +    + +      G  +
Sbjct: 741  DTAQSAIAVVTVHRSKGLEYPVVICPYLWQEPAPAQGPLWRHHGRWLVALNRDWGAGAAM 800

Query: 619  KPKIEKSSTLFILGTLESRLLNF-DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                +  +           +      LIL             +    +R       L   
Sbjct: 801  AAHEDGETRAEAERLAYVAMTRAVRQLILINAQASGQEAGPLQGWLQARPEGLHPLLLPP 860

Query: 678  EKYIGQAAHDFEMANGTRHLIY-TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
            E    +    ++    ++ L       R  +     S +             +  + R  
Sbjct: 861  ETPRRR----WQRTVQSQELQLGAVPRRPLDRLWGRSSYSAWSANASDPHRQEEGRDRDP 916

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ-LINDPYAVYARRILKLDF 795
                   +LD   +    +     P  E      +   + + L    +   A      D 
Sbjct: 917  E-----AELDAAAESLPAEESANGPLCEFPRGPAAGDCLHRILERVGFDTLAEDATSRDA 971

Query: 796  IP-HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
            I    ++     D        +  L+   +      +            E     P    
Sbjct: 972  IEQELRRAGLAPDWVGAVQQGLQRLLMAPLGGALGRLRLQQLNADRRRHELNFDLPVAHD 1031

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK----S 910
                L   ++ +F    E          +   A++ I S G  LTG  D +        S
Sbjct: 1032 GEAVLARNLAVAFCVQAEARFGGDYAARI---AQLTIHSRGY-LTGSIDLVFCDDPDPQS 1087

Query: 911  GFVDITDYKT 920
            G   + D+K+
Sbjct: 1088 GRWWVADWKS 1097


>gi|12657916|ref|NP_075329.1| gp62 [Mycobacterium phage Bxb1]
 gi|12584057|gb|AAG59767.1| gp62 [Mycobacterium phage Bxb1]
          Length = 295

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 80/292 (27%), Gaps = 55/292 (18%)

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                  + +  S S++ Q    P++    R  ++   P          +GT  H +  + 
Sbjct: 29   AREYIYEKKPRSVSQLSQFDKCPFSWKLARHERVWRRPAAW-----LQQGTGVHAVAEKY 83

Query: 820  IKKRINKNT-----------PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI----- 863
            +  ++  +             E    + +  +                +    +      
Sbjct: 84   MLSKLAGSPLTREECYEIFKAEYADGINEATEETPNLGWWFASGRYRGQEDIERRWDIGL 143

Query: 864  --SHSFLEHEEKIQSSIEKI------FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
                  ++  + I              V +P +  ++  GI + G+ D +  L    + I
Sbjct: 144  EQVDKVIDWIDSIPPDGVWHTPDGVPGVELPIEFELD--GIEIRGYIDLVLKLGD-EIRI 200

Query: 916  TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
             D KTG  P         D QL++   AL     ++I   +     Y   K         
Sbjct: 201  RDLKTGLKP-------GDDFQLAVYGLAL-----NEIYGVEARTGDYWMAKTGKPTYPYD 248

Query: 976  NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI---QSEY 1024
                        EK      E+   L+ G+  F      S          EY
Sbjct: 249  LTDWTR------EKISARFHEMERKLEAGD--FTPKPGASCARCDVALSCEY 292


>gi|253574626|ref|ZP_04851966.1| recombination helicase AddA [Paenibacillus sp. oral taxon 786 str.
            D14]
 gi|251845672|gb|EES73680.1| recombination helicase AddA [Paenibacillus sp. oral taxon 786 str.
            D14]
          Length = 1341

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 71/812 (8%), Positives = 183/812 (22%), Gaps = 95/812 (11%)

Query: 158  IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI----- 212
              +   +  E      +          ++ +    + +  + V          +      
Sbjct: 327  RTQLYGRPPEAFLREMH-DMAPLLGALSELVSEFGERYRLQKVSKGWLDFSDLEHYCLQI 385

Query: 213  ---------ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                      L  ++A    +     +++     +      ++  ++    G   +   D
Sbjct: 386  LRHPDSEPGELRPSDAALEYRRQFDEVLLDEYQDTNTVQETIVRLISRENPGNRFM-VGD 444

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +                 +    +  A L   L       + + +  N ++ R
Sbjct: 445  VKQSIYRFRLAEPGLFLEKYRIYGDN----FDGAGLRIDLARNFRSRREVVDAVNLLF-R 499

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE---------------- 367
             ++          +               +    ++ LI+ DN                 
Sbjct: 500  QIMNESVAEISYDTRAELVYGEGFPPEGAEDYRPELLLIDRDNGSSGGSDSSERGDNEWT 559

Query: 368  -----------------REEAISIAIALRMSLDENK------------------KKSALI 392
                             R EA +IA  +R  L E                    +   ++
Sbjct: 560  DGDGGDEEDEAALIEAVRLEARAIAARIRGMLGEGGEPLRIYDKQLQAMRPVAFRDMVIL 619

Query: 393  TADRNLARR-VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
                      +  EL   GI                  + SLL  I      + +A +++
Sbjct: 620  LRSTLTWAPAMIEELRVEGIPAYGELSQGYFQASEVETMLSLLQVIDNPLQDIPLAAVLR 679

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             PL  F   E    R  +            +       +L   R       +       +
Sbjct: 680  SPLYDFSEEELADIRLASPSGRYYEAVLARAAAGNAESALSDSRGGDAGEASVYHPETGQ 739

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            +     +   L +   L+ +    +             + D  +        +       
Sbjct: 740  IEPSANDALALKLQAFLRQLEAWRSMARVGQ-------LGDLIREIYRETGYLEWVGGLP 792

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG-ETVKPKIEKSSTLFI 630
                        L       + + +      + ++  +              E+   + I
Sbjct: 793  GGTQRQSNLQALLDRARQYEVSSSAPGLFRFLRYVTRLRENGGDLGAPGDAGEQGDGVRI 852

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
            +   +S+ L F  + + GL++    ++      + + +      K  +     +      
Sbjct: 853  MTIHKSKGLEFPVVFVAGLSKQFNRQDLNAPFLMHKEL--GFGPKYVDANTRVSYPTLPN 910

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
                R     R+  E     +   ++             ++K   +    W   L+ + +
Sbjct: 911  LAIRR-----RAQMELLAEEMRVLYVALTRPKDKLVLVSSVKNLTKSVEAWGGALEASEQ 965

Query: 751  QPH-----YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
            Q         R        A  R  S  E++Q    P    A  +L              
Sbjct: 966  QLPDYLLARGRCYLDWIGPALIRHPSARELRQFAGLPEVGPA--VLADSPSDWHIAFLSA 1023

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
               G                         +     +    E+         R +      
Sbjct: 1024 RSAGQNGGAETEAAATAEATAVDTAQIKALLSGQPTAVLAEDADGTEAAEMRAMVESRLS 1083

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
                +    + + +     + A + ++   + 
Sbjct: 1084 WTYPYAAASRIAAKTSVTEMKALLMLQEEPVR 1115



 Score = 38.7 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 50/184 (27%), Gaps = 39/184 (21%)

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                  ++    T+RG  +H ++  L           +   + ++I+             
Sbjct: 1144 RPRFMEQRKLTPTERGVAYHTLMQHLPFD-AEPGIAVVQATLARLIERKIMTA---EQAA 1199

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM------------------------ 889
             I      ++  S L  E   Q+    +   +P                           
Sbjct: 1200 AIEVDSIARLLQSPLG-ELLRQADW--VKREMPFSYGLPAAEASPQLGGLEAMQDGTAGD 1256

Query: 890  ---AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN----PKKETAQKLIDPQLSLEAA 942
                ++   + + G  D +     G V + DYK+              +    QL L A 
Sbjct: 1257 AIRELDGETVLIQGIVDCLF-AAGGKVYLLDYKSDRVLEHRGGAAALAESYRFQLELYAK 1315

Query: 943  ALKA 946
            A++ 
Sbjct: 1316 AVEE 1319


>gi|19703859|ref|NP_603421.1| DNA helicase II [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19714017|gb|AAL94720.1| DNA helicase II [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 919

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 59/412 (14%), Positives = 140/412 (33%), Gaps = 55/412 (13%)

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL-NEGVWPKNTAK 660
              ++++I+ +    E    +   +  +  L   +S+ L F  +I+  L ++     + ++
Sbjct: 540  FTKYLEILKQSRVDEIFSEEDYPNDCIPFLTIHQSKGLEFPVVIVFSLYSKPNVSGDLSR 599

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719
               + R++ S+  +   +K        F +A    ++L+      +       S +    
Sbjct: 600  QTSIDRLINSNSKISEIDKEYFDFYRKFYVAFSRAKNLLVLSCYEKGLSENFKSFFYSVR 659

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
             V       + +        D  R L YT                        ++I    
Sbjct: 660  GVNSLQFDINQINLDEVSKKDERRILSYT------------------------TDIALYR 695

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
              P   +      +    +   D    + G + H  I  + K  + K     ++ ++ I+
Sbjct: 696  YCPMKYFL-----VREKEYSTFDKKVFNLGIITHKAIEHINKSFLQKQEIFSDNYIENIV 750

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
             + ++ +N+    ++        I   +++ E+     I+K+      ++        L 
Sbjct: 751  KNIYKFQNIDLDNNV---ERIINIVKKYIKDEKDNFKYIKKVEA-SEFRVE---DNYILY 803

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
            G  D I   ++  + I D+KTG    +         QLSL    L+     +I       
Sbjct: 804  GQIDLILEDEN-EIKIIDFKTGKY-NEFEFSSNYRQQLSLYKLLLQKKYDKEIK----TY 857

Query: 960  LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN---GEQPF 1008
            L+Y+        +     K+    DE  ++ L+N+ + V  + +    + P+
Sbjct: 858  LYYL--------EEDEPKKEILIDDEDLKEDLENINKTVQDILDKKFPKIPY 901


>gi|322373657|ref|ZP_08048193.1| ATP-dependent nuclease subunit A [Streptococcus sp. C150]
 gi|321278699|gb|EFX55768.1| ATP-dependent nuclease subunit A [Streptococcus sp. C150]
          Length = 1217

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/401 (11%), Positives = 102/401 (25%), Gaps = 27/401 (6%)

Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGP 229
           +       L   F+   S  + +  ++ NA          +R   E+       +     
Sbjct: 355 DDILPLLELLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEENPEVAASYRDRYHE 414

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
           +++     +     R++  ++   NG       D       +     +  N         
Sbjct: 415 VMVDEYQDNSHTQERMLELLS---NGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFL-- 469

Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
            +P      LL      + +V    N          +    +         +    E   
Sbjct: 470 DNPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSEKQKEPHP 529

Query: 350 PNIQKCFSDVALIEADNEREE-------AISIAIALRMSLDENKK-----KSALITADRN 397
            N  +     +     N  EE       +  I++ ++  +  +++        L+   RN
Sbjct: 530 ENETEVLIYNSDETGANPDEEGPDQPISSGEISLVIKEIIKLHEQGVRFEDITLLAPTRN 589

Query: 398 LARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
               +       GI +           +L   I+   L AI    +  A+  L++ P+  
Sbjct: 590 TYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALVALLRSPMFH 649

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
           F   +     A  A E         +     L   V+ +    K                
Sbjct: 650 FNEDDL-ARIAVQADEGQFYDKLLVACTKTGLHPEVVTQGLDAKLTLFTETLADWRDYSK 708

Query: 517 KELAVLLVDHI---LQCITPLVTYKTNKNSTCGNLSISDWT 554
                 L+  I         + +    +       +++   
Sbjct: 709 WHSLYDLIWKIYNDRFYYDYVGSLPRAEQRQANLYALALRA 749



 Score = 43.4 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 17/149 (11%)

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                  G+  H ++  LI           + +  Q +     + +    +    R    K
Sbjct: 1057 VTGAAVGSATHELMQRLILS---------DTVTLQDLTQALGRVSADDQVKA--RVQLEK 1105

Query: 863  ISHSFLEHEEKI-QSSIEKIFVNIPAKMAIESI----GIHLTGFADRIDLLKSGFVDITD 917
            +   F     K+  ++ +K+    P  M  E         + G  D   LL    + + D
Sbjct: 1106 LLGFFDTELGKLILANRDKLRREAPFAMLAEDPASKENFVVRGIIDG-YLLLENRIVLFD 1164

Query: 918  YKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            YKT         ++    Q+SL A AL  
Sbjct: 1165 YKTDHFTHPSEIKERYTGQMSLYAKALSQ 1193


>gi|254796881|ref|YP_003081718.1| hypothetical protein NRI_0499 [Neorickettsia risticii str.
           Illinois]
 gi|254590117|gb|ACT69479.1| conserved hypothetical protein [Neorickettsia risticii str.
           Illinois]
          Length = 674

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 7/149 (4%)

Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
              +     + K F P+E  P+  S + I+ LINDPY  Y R IL +         P + 
Sbjct: 527 QPIETVAVVKEKLFVPMEMLPKKLSPTMIELLINDPYKFYVRYILAIKETNSVVVKPGQK 586

Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH-IDIIWRHLFHKISH 865
           + G + H +     K   +K          +I+ +  +        +  +W     KI  
Sbjct: 587 EFGYIMHKVFQGASKTHFSK------EEYTRILGNELKIYATRYQYVKNLWLPRGLKILE 640

Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
            F     +    I+ +       + I   
Sbjct: 641 QFATFHNERLGEIDTLENEKELSIFIADG 669


>gi|218294885|ref|ZP_03495739.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
 gi|218244793|gb|EED11317.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
          Length = 868

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 110/967 (11%), Positives = 239/967 (24%), Gaps = 138/967 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR----SEFIEITGKKSTILPIIKSLGD 83
             LVE  +    + + L  +     T++A +ELR       + ++ +   +    + +  
Sbjct: 14  HALVEELKGLIQSGVPLRRIAALTFTRKAAEELRGRAKRAVLALSAEDPRLKEAEREVHG 73

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            +       +  +     P+ ++     L                 L     L    S  
Sbjct: 74  ALFTTIHGFMAEALRHTAPLLSLDPDFALLD-------------TFLAEALFLEEARSLL 120

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
               L   LA  +  +  +    E LH L   +    + L  + L+   +     L   +
Sbjct: 121 YRKGLDGGLARALLHLYRKRTLAETLHPLPGAEGV--FALYLEALEGYRRRLPAFLSPSD 178

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                     L   EA   +      I++     + P   R    +     GA ++   D
Sbjct: 179 L--EALALRILENPEALRRVVERFPHILLDEYQDTGPLQGRFFQGLKEA--GARLVVVGD 234

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                 ++     +                  L+          E + R   +  E   R
Sbjct: 235 PKQSIYLFRNARVEVFREALKQAEEV----RYLSTTYRHAQAVAEFLNRFTALFGEEGVR 290

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
                +     +   +     LE K                   R EA  +   L    +
Sbjct: 291 VRPHRQEVGRVEVHWVVGEGGLEEK------------------RRAEAHLLLDRLMALRE 332

Query: 384 ENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF--- 438
           E     + A++   R+    ++      G+   +  G           L   L       
Sbjct: 333 EGYAFSQMAVLVRSRSSLPPLEAAFRARGVPYALGRGRSFFARPEVRDLYHALRLSLLEG 392

Query: 439 --KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                + +A+   ++ P       E                  K    I  L   V  ++
Sbjct: 393 PPGPEERLALLAFLRGPWVGLDLSEVE-------------EALKAQDPIPLLPEAVRAKL 439

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
              +    +P  ++       E  +  +    +     +             ++ +W +L
Sbjct: 440 RALRALAGLPPLEALKRLSRDEAFLRRLSPRARVNLDALLLLAAMERFPDLEALLEWLRL 499

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                +   L E                        E    +  +  + ++     +   
Sbjct: 500 RAEDPEAAELPEGE----------------------EGVQVLTVHGAKGLEWPVVALFDL 537

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
           +     ++   L  LG                           +     + ++  L    
Sbjct: 538 SRGENPKEEDLLVGLGGE----------------------VALRGTPAYKEVRKALRKAQ 575

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
           AE+        +   +  R ++        +       W++ L  LG      +   R  
Sbjct: 576 AEEAR---RLLYVALSRARDVLIV----TGSASGRPGPWVEALERLGLGPESQDPLVRRH 628

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
            +       D     P    P P+  L    R              +      +   + +
Sbjct: 629 PFKALPPLGDRPQTPPPPPLPAPYAHLAFPERPLP----FVYSPSAFTKAKEPVPLAEAL 684

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
                       GTL H  I   +     ++   +  L+ Q +   F +           
Sbjct: 685 EKEALPEFYRALGTLVHYAIARHLDP---EDEGAMAGLLLQEVAFPFAE-----GEKRRL 736

Query: 857 RHLFHKISHSFLEHEEKIQSSIE-KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
                 +   +          +E +   +    + +   G    G  DR+  +  G   +
Sbjct: 737 LEEVRDLLRRYRGMLGPSLPPLEAREEDHAELPLVLPLGGTVWYGILDRLYRVG-GRWYL 795

Query: 916 TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
            DYKT     +E   +    QL++     +            A L Y+R      +D   
Sbjct: 796 EDYKT----DREVRPEAYRFQLAIY----RRALLEAWGVEAEARLVYLRHGLVHPLDPEE 847

Query: 976 NDKKKYS 982
            ++    
Sbjct: 848 LERALKE 854


>gi|160940477|ref|ZP_02087822.1| hypothetical protein CLOBOL_05367 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437057|gb|EDP14824.1| hypothetical protein CLOBOL_05367 [Clostridium bolteae ATCC
           BAA-613]
          Length = 608

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/683 (8%), Positives = 151/683 (22%), Gaps = 130/683 (19%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             + + +   T+ A +E++  + +I     + +    +   V                  
Sbjct: 46  DPSHILVITFTRAAAREMKERYEQIAQAGCSRV-SFGTFHSVFFLILKLAYR---YKAAD 101

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
           +   ++ ++  + +L+  +   +   +        + +     +         +D    +
Sbjct: 102 IVREEQRIQYMKEMLVKCDLEVEDEGEFISSVLSEISMVKGELMD--------MDHYYAK 153

Query: 163 EKKWEDLHALKNEKYGMWWL-LAADF---LKIASKYWTERLVELNASSPVGYQIALMRAE 218
               +    L              DF   L +  + + ER                    
Sbjct: 154 NCSEDMFRQLYRGYEARLRQNRLLDFDDMLVMCYELFKERK----------------DIL 197

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
           +    K     I+I            ++  +A    G  +    D       +     + 
Sbjct: 198 SAWQDK--YRYILIDEFQDINRIQYEIVKMLAL--PGNNLFIVGDDDQSIYRFRGAKPEL 253

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                       +P      L       R+ V+  G V +    R     K+        
Sbjct: 254 MLGFE-----RDYPDAKKILLDTNYRCSRQIVEAAGRVISHNRTRFPKEIKAARGNGHPV 308

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADR 396
           +                             +E + I   +R       +    A++    
Sbjct: 309 IIKAWQE---------------------PMDETLGIVTEIRDYASMGISYNDMAVLYRTN 347

Query: 397 NLARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              R +  +L  + I   +   +P L     +  + S + A         +  ++  P  
Sbjct: 348 VGPRLLISKLMEYNIPFYMRDAVPNLYEHWIAGNVISYIRAALGDLSRSNVLQIINRPKR 407

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                     +          +      D ++   L  D    +           R + E
Sbjct: 408 YVSRDALEGQQVSWESVKSFYQDKNWMMDRIE--QLEYDLAMLRNMAPAAAVNYIRKAVE 465

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             E               L         +                               
Sbjct: 466 YDEYIREYAQSRRMKPEELFEVLDQLQES------------------------------- 494

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                G      +   +E           + + + +       + +      + ++    
Sbjct: 495 ---AAGFKTYEHWFIHMEE----------YKEQLKKQAADRDAQRQG-----VSLMTMHS 536

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + +   NEGV P + A              +   +    +      M     
Sbjct: 537 AKGLEFRVVYILDANEGVTPHHKA--------------VLDPDVEEERRMFYVAMTRAKE 582

Query: 696 HLIYTRSLRENNIPTIASRWLQR 718
            L               SR+ + 
Sbjct: 583 RLHIYHVKERYRKKQAISRFAEE 605


>gi|256371278|ref|YP_003109102.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007862|gb|ACU53429.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 715

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 74/706 (10%), Positives = 161/706 (22%), Gaps = 69/706 (9%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             L     +        +S+     T +A  E+      + G  +           +   
Sbjct: 36  RVLTRRVAWLLAAGERPSSILAITFTNKAAGEMAERVRSLVGPNA---------DGLWVS 86

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
            F A       L+P +  ++    +       R  L   I+ L  ++    P + A  + 
Sbjct: 87  TFHAACARMLRLHPELGGLRSGWSIYDQDDA-RRLLERTIRRLDLDTKRFPPRAIAQQVS 145

Query: 148 LAK----NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
           LAK    +     D    E      +  +            A           E L    
Sbjct: 146 LAKARLVDPERFTDEA--EGLYERQVAMVYRSYQAALAEANAADFDDLIGLVVEGLATRP 203

Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
             +    +        E+          +A   G   +                V    D
Sbjct: 204 ELAEHWRRRFRHVLIDEYQDANPAQHAFVAELVGRSGS----------------VFAVGD 247

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                  +                                  K   +++    +N + G 
Sbjct: 248 VDQSIYAFRGADPSGVLTFEERFD----------------GAKVVTLEQNYRSTNAILGL 291

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
           +  +           + +                     +A +ER+EA  +A  +R  L 
Sbjct: 292 ANAVIAKNRRRYAKHLFSELGEGTPA----------RRYQATDERDEARWVAATVREFLQ 341

Query: 384 ENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                    A+I      +R ++   +  GI   +  G+          L + L  +   
Sbjct: 342 RGGVDPSEIAVIFRTNAQSRPLEEAFSEAGIPFRVVGGVRFYERREVRDLLAYLRVLANP 401

Query: 441 NDFMAIATLVKHPLAKFGFP-----EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
           +D +A+A ++  P    G       +   +    ++  +          +   +   L  
Sbjct: 402 DDDVALARILNVPRRGIGRGTEEALQAAAALRGRSMLSLLRAEGVEVLGLTSRQERALRG 461

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                +         R SE    +      L     +    L     N      + + +D
Sbjct: 462 FVELIDRLGALASLHRPSELIDAVVAETSYLEHLNEEDPITLEGRLENIAELRASAAEAD 521

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
             +  +     V   +     +            L   ++      +        I+   
Sbjct: 522 DLESFLERAALVSAVDEVMGASGVTLLTAHAAKGLEFDVVVVVGLEEGVFPHVRAIVDAE 581

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
              E  +      +       L S                 +      +   +      +
Sbjct: 582 AVEEERRLFYVAMTRARTTLVLTSARRRASWGEPLYNPPSRFLDELPADLVATTAAPVAV 641

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
               AE     +A     A  +  ++  R            R + R
Sbjct: 642 GTACAESIQRASAVVEARAARSEWVVGDRVFHARYGEGTIRRVVPR 687


>gi|92113735|ref|YP_573663.1| UvrD/REP helicase [Chromohalobacter salexigens DSM 3043]
 gi|91796825|gb|ABE58964.1| UvrD/REP helicase [Chromohalobacter salexigens DSM 3043]
          Length = 729

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 81/732 (11%), Positives = 192/732 (26%), Gaps = 126/732 (17%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +  A    TLV+   +   + +    + + +  + A ++  ++       +   LP ++
Sbjct: 24  AVAGAGKTTTLVQRVLHLLASGVPPQRILVLMFNRAAREDFTAKLQREATGQ--RLPDVR 81

Query: 80  SLGDVVEEKF-TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
           +   +      T       +    ++   +   L R  +    +  D  +         L
Sbjct: 82  TFHSIGHRLTQTLTRWGYLSPRQLIAADWQRERLLRQAVQMSLEQADDSQRQAALEADRL 141

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTE 197
                      + LA   ++++ E +  E+LH  L        +  A         ++  
Sbjct: 142 -----------ETLAQFCELVKAEMRTPEELHERLDFGDDTQHFCEA-------YAHFET 183

Query: 198 RLVELNASSPVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            + +    +        +R      EA   ++G    +I+           RL++ +A  
Sbjct: 184 LIADHGVMTYADLLYRPLRCLEATPEARARVQGFLDHVIVDEYQDINEVQQRLLAILAG- 242

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
              A V+   D +     W      +                    L             
Sbjct: 243 -KRAQVMAVGDANQCIYEWRGARPDAMFE-------------RFGALFGTAHDYPLSYTF 288

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                  +     + +    P    D                   + AL+EA  E ++A 
Sbjct: 289 RHGHVLALAANHAIRANRRRP----DQLCLAAPGTPTTRADVAVGNAALLEALREWQQAG 344

Query: 373 SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILT 431
                          ++ ++     L+  V+L+L R G+   ++     +        L 
Sbjct: 345 RA-----------LSETCVMVRSWALSVSVQLQLLRAGVPFRLAREDRFVFRLPLVQALA 393

Query: 432 SLLNAIFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
             L         +D   +  L+  P                                   
Sbjct: 394 GYLALARDGNRLHDPEQLNLLLSQPTVFVPRETLTALA---------------------- 431

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                      +   H   W  R       L  L   ++ +    L           G+ 
Sbjct: 432 -----------RQLAHTQQWPERHDPLLSALKPLQRRNLKRRWQLLCELPRL-----GHW 475

Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             +   +  V   +     +         E++ + L      +IE    +  +   +I++
Sbjct: 476 PPAKLLEHVVEATEADKALKRAASRRAKAEDDVRLL----DVLIEQAGELANDPDAFIEL 531

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
           +++ ++G        +   + +     ++ L +  + L G+NE  +P  T + P      
Sbjct: 532 LSQPVEG--------RGDGVLVTTVHGAKGLEWPLVALWGVNEEDFPHYTRETPL----- 578

Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
                   AE+   +    +      R  +       +      SR++            
Sbjct: 579 -------DAERLEEERRLYYVAITRARERLLV---LHDGGDHRPSRFIDETAWDDCHRAA 628

Query: 729 DNLKKRGQCYLD 740
             L +     L 
Sbjct: 629 AALGEAPFESLA 640


>gi|309806225|ref|ZP_07700239.1| conserved domain protein [Lactobacillus iners LactinV 03V1-b]
 gi|308167372|gb|EFO69537.1| conserved domain protein [Lactobacillus iners LactinV 03V1-b]
          Length = 434

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 70/243 (28%), Gaps = 34/243 (13%)

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
           P    P     L       S S+++    + Y  +    L L     F+ +      G  
Sbjct: 26  PVNLTPALAQELYGNNINISISQLETFYANSYEYFLTYGLHLHKR--FENELTNIQSGNY 83

Query: 812 FHNIITELIKKRINKNTPEIN------HLMKQIIDSHFE-----KENLPPHIDIIWRHLF 860
           +H  +  L+K                  ++   I    +     +E L    +       
Sbjct: 84  YHETMDRLVKYLKQHKLDFAELTKEKISVILANIQDELKTKGSYRELLGDPFNEFLFKCL 143

Query: 861 HKISHSFLE--HEEKIQSSIEKIFVNIPAKMA--IESIG------------IHLTGFADR 904
            + +   +   H+   Q+    ++  +       I  +             I L G  DR
Sbjct: 144 DRTTKKVVNYWHQNMCQTKFSPLYSELSFGNKEYIAGLSYQFIDKQQKTHHISLRGKIDR 203

Query: 905 IDLLK--SGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG-SFSQIDCRKVAN 959
           +DLLK     +  + DYK+          +  I  Q+    + L+        +   +  
Sbjct: 204 VDLLKDCDNEILQLIDYKSSAKKFDFNLFKNGISMQMLSYLSVLQDNSHIFSTNPVNIFG 263

Query: 960 LFY 962
            FY
Sbjct: 264 AFY 266


>gi|257791534|ref|YP_003182140.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
 gi|257475431|gb|ACV55751.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
          Length = 753

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 58/527 (11%), Positives = 114/527 (21%), Gaps = 92/527 (17%)

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
               I++            LM  +A +     V+   D       W     +        
Sbjct: 255 RLEYIMVDEFQDIDGLQHELMEVLAGYHKNLFVV--GDPDQTIYTWRGADVRYLLDFDKR 312

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
              +         +L+        V    ++  +   R      +        +      
Sbjct: 313 FPGT-----RTVMMLENYRSAPRVVAVANSLIEKNRERVPKRLAAMRSVHGPTVWRH--- 364

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVK 403
                             A +   EA  IA        E    +  A++      +R V+
Sbjct: 365 ------------------AKSPDGEAAWIAQGALALHGEGVAYRDMAVLYRAHYASRPVE 406

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
             L R  +   + +G+P           S L  +   +D            A+     K 
Sbjct: 407 EALLRAEVPHAVYSGVPFFGRREIKDALSYLRLVAYQDDLD---------FARVANAPKR 457

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
              A+    L              L+  V D +                        + L
Sbjct: 458 NLGARRMAFLREKADELGCSLFEALERFVDDDL---------------FKRTKARQLLQL 502

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
           VD                        +S+         ++      R   +    +    
Sbjct: 503 VDRFRSSYEG--------------RPVSEVLAAV--LSESGYERALRTEGSQERLDNLAE 546

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
           L     +   T    +     ++     L          +    + ++    ++ L F  
Sbjct: 547 LKQSVYEFETTCGE-EVTLEHYLAHTALL---TNADAMDDAQDKVRLMTVHAAKGLEFAH 602

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRS 702
           + L  + EGV P                    T +    +    F      R  L  T +
Sbjct: 603 VFLCSMTEGVLPSRKTD---------------TPQGMEEERRLAFVAMTRARDGLYLTEA 647

Query: 703 --LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                   P   SR+L  +            ++            D 
Sbjct: 648 EGRGHEGAPRYPSRFLLDIDPAALEFSNKPAERELDDARAAYALADR 694


>gi|187924915|ref|YP_001896557.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
 gi|187716109|gb|ACD17333.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
          Length = 720

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 64/534 (11%), Positives = 153/534 (28%), Gaps = 59/534 (11%)

Query: 10  TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE--- 66
           T  P +        +    TL        +       + +   ++RA  E+         
Sbjct: 47  TAPPGALLVIAGAGSGKTNTLAHRVANLVVKGADPRRILLLTFSRRAALEMTRRVTRIAG 106

Query: 67  -ITGKKSTILPIIK---SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
              G ++ +   +    +   V       +      L P  +   R    A L+ + R++
Sbjct: 107 AALGSRAALAQGLTWSGTFHSVGARLLR-EYADLIGLAPAFTINDREDS-ADLMNLVRHE 164

Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE-DLHALKNEKYGMWW 181
           L    K+    +  +     +  +    +L  ++D      ++WE DL  L         
Sbjct: 165 LGLSAKERRFPAKGTCFAIYSRVVNTGASLGQVLDKAFPWCREWEADLRMLFAAYVEAKQ 224

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
             +         YW+    E                     + G    +++     +   
Sbjct: 225 KQSVLDYDDLLLYWSHMAAEPG---------------IAADLSGRFDHVLVDEYQDTNRL 269

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
            A ++  +   P+G  +    D       +   T ++     ++                
Sbjct: 270 QASILLALK--PDGRGLTVVGDDAQSIYSFRGATVRNILDFPAHFDPP------------ 315

Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
               K+  ++R    S  +   S  + +      T ++        +            L
Sbjct: 316 ---AKQVTLERNYRSSAPILAASNAVIELASERYTKNLWTDKASAQRP----------RL 362

Query: 362 IEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
           +   +E ++A  I   +  + ++    K  A++    + +  +++ELTR  I      G+
Sbjct: 363 VTVADEADQARYIVEQVLEAREQGMKLKSQAVLFRAAHHSAALEIELTRRNIPFVKFGGL 422

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
               ++H   + ++L       D +A   +      +        + A+   E+VA  G+
Sbjct: 423 KFLDSVHVKDVLAVLRWAENPRDRVAGFRV-----VQLLPGVGPATAARVLDEVVACAGS 477

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
            N  D            A  + + H            +       + + +   P
Sbjct: 478 GNPADTAGGALAAFTAPARAQEDWHPFVKLMSSIYGRQTPWPAEFEMVRRWYEP 531


>gi|330009177|ref|ZP_08306461.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. MS 92-3]
 gi|328534896|gb|EGF61433.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. MS 92-3]
          Length = 1178

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 107/865 (12%), Positives = 220/865 (25%), Gaps = 130/865 (15%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTG 237
              A   ++ A      R  EL     +      +R +        ++      +I     
Sbjct: 329  ARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRGDSGETLASAIRQRFPVAMIDEFQD 388

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            + P   R+   +        +L   D       +      +      +        Y+L 
Sbjct: 389  TDPQQYRIFRRIWRRQPETALLLIGDPKQAIYAFRGADIFTYMKARGDVAAH----YTLD 444

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF- 356
                        V RL ++S+  +    +          +      +    +P +     
Sbjct: 445  TNWRSSPGMVGSVNRLFSLSDNPFMFHEIPFLPVKAAAKNKGLRFTVDAADVPAMNVWLM 504

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
                +   D +   A   A  +R  L   ++  AL+            ++T    N   +
Sbjct: 505  PGDTVGSGDYQTFMAQLCATQIRDWLSAGQRGRALLWRGETSRPVQASDITVLVRNRLEA 564

Query: 417  A--GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
            A     L T    S+  S  +++F+  +   +  L++  LA         + A +     
Sbjct: 565  AQVREALQTLGIPSVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSM---- 620

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                       +D+++L  D  A          ++    +      +  +         L
Sbjct: 621  ------FGLTALDIENLNQDEQAWDALVEEFSEYRQIWRQRGVMPMLRALMTARHIAENL 674

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
            +  +  +      L IS+  +   + L++                    L    ++ I  
Sbjct: 675  LATRGGERRLTDILHISELLQEAASQLESE-----------------HALVRWLAQHIAE 717

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                 A+    ++                    + I+   +S+ L +  + L  +     
Sbjct: 718  PDSNAASQQMRLE---------------SDKHLVQIVTIHKSKGLEYPLVWLPFIARFRK 762

Query: 655  PKNTAKNPFLSRVMQSDLN-------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
                  +   +     DL        L  AE+        +                 ++
Sbjct: 763  QDQAFYHDRETFAAVLDLGQDEASLELAEAERLAEDLRLLYVALTRAVWHCSLGVAPLSS 822

Query: 708  IPTIASRW----LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
              +  S +    L RLL  G       L  R   +      L    +        P    
Sbjct: 823  RKSGNSDFHLSALGRLLQAGEAMDAAGLAARLADFCHGDIALQRPGELDLTPWQAP---- 878

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILK-------------------------LDFIPH 798
             A     S  E+++ I D + V +   L+                          +    
Sbjct: 879  AATIPRLSARELQRRIADDWRVTSYSGLQQHGFSGGQDLLPRLDVDAAGVGEVVEEPQLT 938

Query: 799  FKKDPDRTDRGTLFHNIITE--LIKKRINKNTPEINHL----------MKQIIDSHFEKE 846
                P     GT  H++  E    +        E   L          +   +    +  
Sbjct: 939  PHHFPRGAAPGTFLHSLFEELDFTQPVPEGWMAEKLQLSGFDAQWAPVLTDWLGGVLKTR 998

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI----PAKMAIESIGIH----- 897
               P I +       K              + E++   I    P       +        
Sbjct: 999  LPGPDIALNQLASRDKQVEMAFYLPIAQLLTAERLDALIRQYDPLSADTPPLDFRQVRGM 1058

Query: 898  LTGFADRIDLLKSGFVDITDYKTG---------DNPKKETAQKL--IDPQLSLEAAALKA 946
            L GF D +   + G   + DYK+            P  E A +    D Q  L + AL  
Sbjct: 1059 LKGFIDLVFRHE-GRYYLLDYKSNWLGEDREAYTRPAMEQAMRAHRYDLQYQLYSLALHR 1117

Query: 947  GSFSQID----CRKVANLFYIRLKQ 967
                ++      R    + Y+ L+ 
Sbjct: 1118 YLRHRLADYDYDRHFGGVIYLFLRG 1142


>gi|289640634|ref|ZP_06472806.1| conserved hypothetical protein [Frankia symbiont of Datisca
           glomerata]
 gi|289509523|gb|EFD30450.1| conserved hypothetical protein [Frankia symbiont of Datisca
           glomerata]
          Length = 281

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 11/184 (5%)

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
           +  +    + S++      P       + +   +       +    G+  HN +     +
Sbjct: 9   MPRRLFVCTPSKLSAFAECPRRYRMAYLDRPAPVKGPAWAHN--SLGSSVHNALRAWWDE 66

Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
            + + TP     + +++                WR    ++   ++        + E   
Sbjct: 67  PLARRTPTRAAHLVRLLW--ITDGWRDAEQSTTWRERAAEMVGRYVATL---DPAREPRA 121

Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
           V        E   + L+G  DR+D  + G +   DYKTG  P  +   + + P L+L A 
Sbjct: 122 VERQVAARTE--RLALSGRVDRLD-DRDGELVAVDYKTGRRPPTDDDAR-VSPALALYAL 177

Query: 943 ALKA 946
           A+  
Sbjct: 178 AVSR 181


>gi|152971748|ref|YP_001336857.1| exonuclease V subunit beta [Klebsiella pneumoniae subsp. pneumoniae
            MGH 78578]
 gi|238896335|ref|YP_002921071.1| exonuclease V subunit beta [Klebsiella pneumoniae NTUH-K2044]
 gi|150956597|gb|ABR78627.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH
            78578]
 gi|238548653|dbj|BAH65004.1| exonuclease V beta subunit [Klebsiella pneumoniae subsp. pneumoniae
            NTUH-K2044]
          Length = 1178

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 103/861 (11%), Positives = 217/861 (25%), Gaps = 122/861 (14%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTG 237
              A   ++ A      R  EL     +      +R +        ++      +I     
Sbjct: 329  ARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRGDSGETLASAIRQRFPVAMIDEFQD 388

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            + P   R+   +        +L   D       +      +      +        Y+L 
Sbjct: 389  TDPQQYRIFRRIWRRQPETALLLIGDPKQAIYAFRGADIFTYMKARGDVAAH----YTLD 444

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF- 356
                        V RL ++S+  +    +          +      +    +P +     
Sbjct: 445  TNWRSSPGMVGSVNRLFSLSDNPFMFHEIPFLPVKAAAKNKGLRFTVDAADVPAMNVWLM 504

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
                +   D +   A   A  +R  L   ++  AL+            ++T    N   +
Sbjct: 505  PGDTVGSGDYQTFMAQLCATQIRDWLSAGQQGRALLWRGETSRPVQASDITVLVRNRLEA 564

Query: 417  A--GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
            A     L T    S+  S  +++F+  +   +  L++  LA         + A +     
Sbjct: 565  AQVREALQTLGIPSVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSM---- 620

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                       +D+++L  D  A          ++    +      +  +         L
Sbjct: 621  ------FGLTALDIENLNQDEQAWDALVEEFSEYRQIWRQRGVMPMLRALMTARHIAENL 674

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
            +  +  +      L IS+  +   + L++                    L    ++ I  
Sbjct: 675  LATRGGERRLTDILHISELLQEAASQLESE-----------------HALVRWLAQHIAE 717

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                 A+    ++                    + I+   +S+ L +  + L  +     
Sbjct: 718  PDSNAASQQMRLE---------------SDKHLVQIVTIHKSKGLEYPLVWLPFIARFRK 762

Query: 655  PKNTAKNPFLSRVMQSDLN-------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
                  +   +     DL        L  AE+        +                 ++
Sbjct: 763  QDQAFYHDRETFAAVLDLGQDEASLELAEAERLAEDLRLLYVALTRAVWHCSLGVAPLSS 822

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
              +  S +    L                  L      D   + P      P+    A  
Sbjct: 823  RKSGNSDFHLSALGRLLQAGEAMDAAGLAARLADFCHGDIALQIPGELDLTPWQAPAATI 882

Query: 768  RTYSFSEIKQLINDPYAVYARRILK-------------------------LDFIPHFKKD 802
               S  E+++ I D + V +   L+                          +      + 
Sbjct: 883  PRLSARELQRRIADDWRVTSYSGLQQHGFSGGQDLLPRLDVDAAGVGEVVEEPQLTPHQF 942

Query: 803  PDRTDRGTLFHNIITE--LIKKRINKNTPEINHL----------MKQIIDSHFEKENLPP 850
            P     GT  H++  E    +        E   L          +   +    +     P
Sbjct: 943  PRGAAPGTFLHSLFEELDFTQPVPEGWMAEKLQLSGFDAQWAPVLTDWLGGVLKTRLPGP 1002

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI----PAKMAIESIGIH-----LTGF 901
             I +       K              + E++   I    P       +        L GF
Sbjct: 1003 DIALNQLAARDKQVEMAFYLPIAQLLTAERLDALIRQYDPLSADTPPLDFRQVRGMLKGF 1062

Query: 902  ADRIDLLKSGFVDITDYKTG---------DNPKKETAQKL--IDPQLSLEAAALKAGSFS 950
             D +   + G   + DYK+            P  E A +    D Q  L + AL      
Sbjct: 1063 IDLVFRHE-GRYYLLDYKSNWLGEDREAYTRPAMEQAMRAHRYDLQYQLYSLALHRYLRH 1121

Query: 951  QID----CRKVANLFYIRLKQ 967
            ++      R    + Y+ L+ 
Sbjct: 1122 RLADYDYDRHFGGVIYLFLRG 1142


>gi|18138444|ref|NP_542546.1| hypothetical protein HF2p052 [Halorubrum phage HF2]
 gi|32453871|ref|NP_861634.1| hypothetical protein HalHV1gp046 [Halovirus HF1]
 gi|18000385|gb|AAL54968.1| hypothetical protein [Halorubrum phage HF2]
 gi|32346439|gb|AAO61345.1| hypothetical protein [Halovirus HF1]
          Length = 338

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 57/200 (28%), Gaps = 38/200 (19%)

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
           P   +E      S S +K  +  P   Y                   T++G+  H    +
Sbjct: 17  PEEHVENGLEHVSKSRVKTYLQCPRKFYYSYWCGNRTP-----GSYHTEKGSQIHRAYED 71

Query: 819 LIKKRIN-----KNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---HLFHKISHSF--- 867
                I         PE    +    +     + L PHI   W+     +     +    
Sbjct: 72  FHLNLIEYVEEHGERPETYAELMGPWEDW--AQWLEPHIRNFWQFEDKRWELALDAAQRL 129

Query: 868 ----------LEHEEKIQSSIEKIFVNIPAKMA---IESIGIHLTGFADRID-------L 907
                     ++ E +  +    + V +  ++    I    I   G+AD +        +
Sbjct: 130 DASKPEDSKPVDIEAEALNLWLPVGVEVEGRLEGDEIPIGNIPWMGYADALLHAATVPGI 189

Query: 908 LKSGFVDITDYKTGDNPKKE 927
                V I DYKTG     +
Sbjct: 190 EADEGVVILDYKTGKVQDPK 209


>gi|299143270|ref|ZP_07036350.1| UvrD/REP helicase subfamily [Peptoniphilus sp. oral taxon 386 str.
            F0131]
 gi|298517755|gb|EFI41494.1| UvrD/REP helicase subfamily [Peptoniphilus sp. oral taxon 386 str.
            F0131]
          Length = 1036

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 74/227 (32%), Gaps = 36/227 (15%)

Query: 770  YSFSEIKQLINDPYAVYARRILKL----DFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
            YS S       DP + Y   IL             +  D   RG + H            
Sbjct: 827  YSASGYMAFKKDPVSFYRTYILGDEIEYKPEGSEYEGIDPIKRGIIVHKYAQFC------ 880

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
                +I+  +K+ ++       +  ++  + +     +       ++  +     +    
Sbjct: 881  --PSDIDEFLKRELEQ--NDIAVTNYVLDLLKDRIKNV-------DKSQR--GTILHREY 927

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
                 +++    + GF D+I    +G ++I D+KTG    KE+ +     QL +      
Sbjct: 928  EFYYPVKNG--IINGFIDQI-REVNGDIEIIDFKTGHL-TKESIEY-YKLQLQIYT---- 978

Query: 946  AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
              ++  I  + V +   I L    + +    D  K S D       K
Sbjct: 979  -RAYESISGKHVKSAILISLADNTEHE---IDISKTSVDNTIADFEK 1021


>gi|72382482|ref|YP_291837.1| DNA helicase/exodeoxyribonuclease V subunit gamma [Prochlorococcus
           marinus str. NATL2A]
 gi|72002332|gb|AAZ58134.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Prochlorococcus
           marinus str. NATL2A]
          Length = 1097

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 79/747 (10%), Positives = 199/747 (26%), Gaps = 72/747 (9%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
              L   L +  R +P  P +   V I V T  + + L  +   I    + +       G
Sbjct: 10  AEWLAEILGQELRLNP--PEITEEVNIIVSTWPSSRWLSEKLSIINNINALV--KYPFPG 65

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN-KLPDIIKDLYPESPLSLPIS 141
             ++      + +  +   P    Q +  +  L+      +   +I+     S       
Sbjct: 66  TYLKRLVKRIIGIDPDEKDPWEKNQLVWNILELLPELMKVEEAQVIRSWLEISDKKDTQI 125

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---GMW--------WLLAADFLKI 190
                 LA N+A+  D         E +    ++K               W      L  
Sbjct: 126 NLKLWDLANNIAETFDDYILYR--PEIIKQWLSKKMKKKSREISVNKNILWQEILFNL-- 181

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
               + +   +            L + +   L       + + G +   P    L+   +
Sbjct: 182 ---LYKKINKDPFCIQVEKAIKRLKKDDISKLDYP--KNLYVYGLSSLAPLQIDLIQAFS 236

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
              N  I +      +         +      +            L   L  +  + + +
Sbjct: 237 KVINIKIYIISPCNDLWQRCEARRLQFRNTWNTPPDRQWLLESPRLEAFLGRMGAEYQQL 296

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI-----------QKCFSDV 359
                           I        T+     ++LE     +           +K    +
Sbjct: 297 LEGSGEYQLGDRNEEDIFSLTADIATNKGNKPNLLEQLQQELLSTKSENILTKEKSDKSL 356

Query: 360 ALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFGI---- 411
             +++  +  +   I   +     +      +   ++T   +    +   +         
Sbjct: 357 LFLKSPGKYRQVELIRDHILQLFSDDIKIQPRDILIMTPQVDSYAPIITSVFNNIDKNTT 416

Query: 412 --NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--------- 460
                I+             + +L               L+ +P  +             
Sbjct: 417 QLPWVITDKSQEDKVGLIHFVLNLFEISVSRLTASIFENLLINPALRTQQNISIDEVSDI 476

Query: 461 --EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                 +     L+     G +       L+  +L  +    +N            E+  
Sbjct: 477 IKSLQSAGFTWGLDSSERYGEETHSLCWCLERFLLGLV--LPDNPINGISHISPYSENIS 534

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
            A        +  + L       ++     S  +W KL  + ++++  D        W E
Sbjct: 535 SAEF-----TKAWSILSKLCNYIDAIRSKRSCKEWIKLITSLVKDLFGDGGEW---AWEE 586

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           ++  T+ + +  I +    ++ + +   DIIT+ +     K    ++  + I      R 
Sbjct: 587 QQLLTVVNNWGLITDNC-ELEIDCLVVKDIITKALSSTNSKFGH-RTGKITISALEPMRA 644

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           +    +I+ GL    +P+   +  F     + +L           +     + +  ++L+
Sbjct: 645 IPHKIIIIMGLESRTFPRIENRRSFNLLERKRELGDPNQYDKDRYS-LLEALISTRQNLL 703

Query: 699 YTRSLREN--NIPTIASRWLQRLLVLG 723
            + + ++            +Q+ L   
Sbjct: 704 VSWNSKDEKTGEDLEPPSPIQQWLNYL 730


>gi|257139613|ref|ZP_05587875.1| exodeoxyribonuclease V, gamma subunit [Burkholderia thailandensis
           E264]
          Length = 1114

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 83/884 (9%), Positives = 193/884 (21%), Gaps = 71/884 (8%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDVAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA+ +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDDGAAPWRGSPRLAAYLAAADAPMRHELAQRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W          + +          A D     +  W   L EL+ S        L  
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 217 A------EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
           A         H        + +       P    L+  ++   +  I             
Sbjct: 203 AGTFDPGVIAHAQAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCR----EF 258

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
           W  I   +   +        + Q     L ++    +  +  L  ++             
Sbjct: 259 WFDIVTAARVESLDAADQLDYQQVGHPLLAEWGRQTQAQLHMLHELTESAAASDASRYAE 318

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCF---SDVALIEADNEREEAISIAIALRMSLDEN-- 385
              P         IL+ +  +          V +    +   +   +   L    D +  
Sbjct: 319 NPAPTWLARVQNAILDLQPEDALGAPLAERGVEVHVCHSLARQLEVLHDRLLAWFDADPS 378

Query: 386 --KKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                  +   D   A  +   +           I   I+   P      + +L   L  
Sbjct: 379 LAPSDVLVAMPDLAAAGPLIDAVFGTSSGADAARIPYRITGLPPSHANPVARVLLDWLAL 438

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
             +      +   ++             + A  A   +     +     +          
Sbjct: 439 PERNVGAPELVEWLR-------------ADAIAARYGIDATALETVQTWLAASGARRGLA 485

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                  +      R +  D    + L   +     P+ T+     +  G   +      
Sbjct: 486 PDAVEPPNAAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLAR 545

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG--------------------S 596
               L        R L    + +      + F                            
Sbjct: 546 FTDDLDGFAQRIARDLTPQDWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEG 605

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             +A     +         +           +        R L +  + L G+++GV P 
Sbjct: 606 AGRAELPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPS 665

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
               + F    + + L  +           D  +A   R LI        +   +    L
Sbjct: 666 LARADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARDRLLIAYTGRSIRDNAPLPPAAL 725

Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
              L+                     R          +      P         S + + 
Sbjct: 726 VDELLDHLATVSAGPDASPDAVDAARRAFVIEHPLQPFSADYFAPGGALFTYDASRAALA 785

Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
           +L+ +     A             +     D    + +    L++ R+     +    + 
Sbjct: 786 RLLAEGGRAQALPFFSEPLPAEPAEPVAFADFERFWRHPARSLLRARLGIVLWDAQAELV 845

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
              +           +      L  + + +         +    
Sbjct: 846 D-TEPFELDYAGSDALAGRVLPLLIETADAGAFEHALRVADASP 888


>gi|290511196|ref|ZP_06550565.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. 1_1_55]
 gi|289776189|gb|EFD84188.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. 1_1_55]
          Length = 1178

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 103/864 (11%), Positives = 212/864 (24%), Gaps = 128/864 (14%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTG 237
              A   ++ A      R  EL     +      +R +        ++      +I     
Sbjct: 329  ARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRGDSGETLASAIRQRFPVAMIDEFQD 388

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            + P   R+   +        +L   D       +      +      + T          
Sbjct: 389  TDPQQYRIFRRIWRRQPETALLLIGDPKQAIYAFRGADIFTYMKARGDVTAHYTLD---T 445

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                   +     +      N    R +             +R T    +          
Sbjct: 446  NWRSSPGMVSSVNRLFSLSDNPFMFREIPFLPVKAAAKNQGLRFTVDAADVPAMNVWLMP 505

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
               +   D +   A   A  +R  L   ++  AL+            ++T    N   +A
Sbjct: 506  GDTVGSGDYQTFMAQLCATQIRDWLSAGQQGRALLWRGETSRPVQASDITVLVRNRLEAA 565

Query: 418  --GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                 L T    S+  S  +++F+  +   +  L++  LA         + A +      
Sbjct: 566  QVREALQTLGIPSVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSM----- 620

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                      +D+++L  D  A          ++    +      +  +         L+
Sbjct: 621  -----FGLTALDIENLNQDEQAWDALVEEFSDYRQIWRQRGVMPMLRALMTARHIAENLL 675

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
              +  +      L IS+  +   + L++                    L    ++ I   
Sbjct: 676  ATRGGERRLTDILHISELLQEAASQLESE-----------------HALVRWLAQHIAEP 718

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                A+    ++                    + I+   +S+ L +  + L  +      
Sbjct: 719  DSNAASQQMRLE---------------SDKHLVQIVTIHKSKGLEYPLVWLPFIARFRKQ 763

Query: 656  KNTAKNPFLSRVMQSDLN-------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
                 +   +     DL        L  AE+        +                 ++ 
Sbjct: 764  DQAFYHDRETFAAVLDLGQDEASLELAEAERLAEDLRLLYVALTRAVWHCSLGVAPLSSR 823

Query: 709  PTIASRW----LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
             +  S +    L RLL  G       L  R   +      L    +        P     
Sbjct: 824  KSGNSDFHLSALGRLLQAGEAMDAAGLAARLADFCHGDIALQRPGELDLTPWQAP----A 879

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH-----FKKDPDRTDRGTLFHNIITEL 819
            A     S  E+++ I D + V +   L+            + D D    G +        
Sbjct: 880  ATIPPLSARELQRRIADDWRVTSYSGLQQHGFSGGQDLLPRLDVDAAGVGEVVEEPQLTP 939

Query: 820  IKKRINKNTPEINHLMKQIID-------SHFEKENLPPHIDIIWRHLFHKISHSFL---- 868
             +           H + + +D           ++      D  W  +        L    
Sbjct: 940  HQFPRGAAPGTFLHSLFEELDFTQPVPDGWMAEKLQLSGFDAQWAPVLTDWLGGVLKTRL 999

Query: 869  --EHEEKIQSSIEKIFVNIPAKMAI-----------------------ESIGIH-----L 898
                    Q +     V +   + I                         +        L
Sbjct: 1000 PGADIALNQLAARDKQVEMAFYLPIAQLLTAERLDALIRQYDPLSADTPPLDFRQVRGML 1059

Query: 899  TGFADRIDLLKSGFVDITDYKTG---------DNPKKETAQKL--IDPQLSLEAAALKAG 947
             GF D +   + G   + DYK+            P  E A +    D Q  L + AL   
Sbjct: 1060 KGFIDLVFRHE-GRYYLLDYKSNWLGEDREAYTRPAMEQAMRAHRYDLQYQLYSLALHRY 1118

Query: 948  SFSQID----CRKVANLFYIRLKQ 967
               ++      R    + Y+ L+ 
Sbjct: 1119 LRHRLADYDYDRHFGGVIYLFLRG 1142


>gi|149179307|ref|ZP_01857868.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
 gi|148841848|gb|EDL56250.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
          Length = 693

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 75/757 (9%), Positives = 197/757 (26%), Gaps = 121/757 (15%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL     Y     +  + + +   ++RA  E+                 ++ +  ++   
Sbjct: 43  TLSHRVAYLIAQGIDPSRILLLTFSRRAANEM-----------------VRRVDALLRAM 85

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNK--LPDIIKDLYPESPLSLPISPANAI 146
                  +   +  +         ARL+  +     LPD    +       L  +  + +
Sbjct: 86  SAGRENTASARSRSIWGGTFHSTAARLLRRYGQAIGLPDDFTIIDRSDAEDLMSALRSEL 145

Query: 147 WLAKNLADI-----IDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
            L  N         +  I +        L  +    Y  W L  AD LK   + + +R  
Sbjct: 146 DLGNNGKKFPRKGTLLEIYSRCVNTCSKLEPILERHY-PWCLEHADELKKLFQAFVDRKE 204

Query: 201 ELNASSPVG----YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           + N          +           L++G    +++     +    + ++  +   P+G 
Sbjct: 205 KQNILDYDDLLLFWHALAADPAGGKLLRGQFEAVLVDEYQDTNILQSGILKNI--CPDGE 262

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            +    D       +   T ++             PQ      +  L+      + +   
Sbjct: 263 GLTVVGDDAQSIYSFRAATVRNILDF---------PQEYEGTTVVTLEENYRSTQPILQA 313

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +N++   +    +  L                            L++  +  E+A  +  
Sbjct: 314 TNQIIDEAHERYEKNLWSSKISGEAPC-----------------LVDCSDNNEQADFVVQ 356

Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +    +      + A++    + +  +++EL R  I      G+    T H   L + L
Sbjct: 357 QVLEHREAGIPLNQQAVLFRASHHSLSLEVELARRNIAYHKYGGLKFIETAHVKDLMAYL 416

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                  D ++   ++                                     L   +  
Sbjct: 417 RLAENPRDAVSGLRVLT------------------------------------LLPGIGQ 440

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
           + A Q  N          +  + +     V+H    +  +    + ++   G  +     
Sbjct: 441 KKAQQLINLLAESQFRFDAWSEFKPPAATVEHWPLFVRLMKNLSSPQSEKRGISAEVHQV 500

Query: 555 KLTVT-CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
           +   +  L     +   +  +L   E+  +  S     +E  +    ++           
Sbjct: 501 RTFYSPLLDQQYDNATSRQRDLEQLEQVASRFSSRMSFLEEITLDPPSST---------- 550

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
              +     +    L +     S+ L +D + +    +G  P              S+++
Sbjct: 551 QDVSAASGADDDDFLVLSTIHSSKGLEWDAVYVLQAADGSIP--------------SEMS 596

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
           L++ ++   +    +      ++ +Y                      L        +  
Sbjct: 597 LESEDEIDEERRLFYVALTRAKNWLYVCFPHRQYFQNRRWNQAHSYAQLTRFVSPKTISL 656

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
             +        LD   +       +          + 
Sbjct: 657 FQRRPAFSADALDTPQEAEIETTAEDIRKNIRNMWSA 693


>gi|296123691|ref|YP_003631469.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
 gi|296016031|gb|ADG69270.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
          Length = 700

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 59/683 (8%), Positives = 163/683 (23%), Gaps = 59/683 (8%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TLV    +     +    + +   T+RA  E+     ++    +   P I  +       
Sbjct: 54  TLVHRVAHLIATGIDPGEILLLTFTRRAAAEMIRRVEQLLAVAAK-SPGIARIHGRHVVG 112

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
            T   + + +L      +    +   L       L + ++     +              
Sbjct: 113 GTFHAIATRHLREFGQYLGLDADFTILDRSDAEDLMNQLRSELDITRQEKRFP------- 165

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
              L      I +         +L  ++   W       LK   + +T+R  E       
Sbjct: 166 ---LKGTCVEIYSRCVNTRQPLSLVLKETFPWCAEHEAGLKALFQLFTQRKEEQRILDYD 222

Query: 209 GYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
              +  +    +             +++     +      ++  +     G  V+   D 
Sbjct: 223 DLLLFWLALLQDSPAVPLLRQRYKAVLVDEYQDTNALQGEIVRALRPDGQGLTVV--GDD 280

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +   T ++                               + +    S E+   S
Sbjct: 281 AQSIYSFRAATIENILRFDQEYP----------------GTNVLTLSQNYRSSPEILAAS 324

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
            ++           +      + K            L+   ++ E++  +A  +    + 
Sbjct: 325 NLVMSLATEGRKKQLWTNRPPQGKP----------LLVNCRDDNEQSTLVAERILELREM 374

Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
             + K  A++    + +  +++EL+R  I      G+      H     ++L       D
Sbjct: 375 GVSLKGQAVLFRASHHSATLEIELSRRNIPFIKFGGLKFVEAAHVKDAMAMLRLAENPRD 434

Query: 443 FMAIAT--LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
            ++     L+   +      +        +      R +  +        + +  + T  
Sbjct: 435 IVSALRVLLLLPGIGPKTARQLTERLGSGSSAFEPWREHTPAAATKIHWPVFVALLRTLV 494

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDH-ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                         + ++    L++         L   +  +       S S +      
Sbjct: 495 KGGQTTTPLPLQLAQVRQFLAPLLEQKYDHAPARLRDLEQLEIIAARYESRSQFLAELTL 554

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTL-----SSLFSKIIETGSCIKANAIEWIDIITRLID 614
                  D  +            T+         +  +   +     A         + +
Sbjct: 555 DPPTSTQDFAQDPLLDEDWITLSTIHSAKGLEWDAVYVLHAADGNIPADMATRNPREIEE 614

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              +       +   +                 G N+      + +  FL   + +   +
Sbjct: 615 ERRLFYVALTRAKTHLQVYHPQ------RYYFHGKNQSDRHSYSQRTRFLPDDILTAWQV 668

Query: 675 KTAEKYIGQAAHDFEMANGTRHL 697
            T       +         T  +
Sbjct: 669 VTPRIQEPASQTHIANGLTTADV 691


>gi|46580467|ref|YP_011275.1| ATP-dependent DNA helicase UvrD [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|46449886|gb|AAS96535.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio vulgaris
            str. Hildenborough]
 gi|311234209|gb|ADP87063.1| UvrD/REP helicase [Desulfovibrio vulgaris RCH1]
          Length = 1152

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 73/764 (9%), Positives = 149/764 (19%), Gaps = 76/764 (9%)

Query: 226  TKGPIIIAGSTGSIPATARLMS--TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                I++     +       +    V     G  +    D       W        +   
Sbjct: 372  RLAHILVDEFQDTSKDQWAAIQPLAVECLSRGGSLTWVGDVKQAIYGWRGGDSALFDAVL 431

Query: 284  SNTT-------YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
             +           +       +    +     DV  L             +     PPD 
Sbjct: 432  RDGELLAIAGDGISGTLPRNWRSRPEIVHFNNDVFALLGDEAHATAVLRAMLPEGTPPDV 491

Query: 337  ------------SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---- 380
                        +               ++ F  +  + A +  E    +  ALR     
Sbjct: 492  FSEAVDELARAFTGAAQETPPRGDDETQEEGFVRLTHVAAFDSEELDAEVKTALRSLFMG 551

Query: 381  --SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              +L    +  A++      A RV   L  + I +     + L+     S   +LL  + 
Sbjct: 552  DLALRRRWRDVAVLVRTNGEAGRVATWLMEWDIPVVTENSLRLADHPLISQTVALLGFLD 611

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
               D +A       P          L      L+  A+           L +   D    
Sbjct: 612  YPRDDLAFWEFAAGP---------ELLGDAAGLDAPAMDDWLAEGGRGPLFTRFRDAFPA 662

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLT 557
                   P +         +    +          P       +     + +        
Sbjct: 663  VWRRWIAPFYSRAGLMSVYDTVREVYTRFRVFDRYPEDAGFLRRFLEVVHAAEGQGLVSL 722

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
             T L         +   +    +   + ++          +        D          
Sbjct: 723  STFLDFWKRTGGDEKVPMPEGMDAVRVMTMHKAKGLEFPVVVIPFHHQADRADDTPVRME 782

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            V+           +G                +    W +   +        ++       
Sbjct: 783  VEGLDLLVPRCPEMGKPYYEAFAASVREQLHVLYVAWTRPVEELHAFITERKTGKGRSAL 842

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
             + +           G      T          +A    +                    
Sbjct: 843  LEGLKV----LLGLCGVPETWGTWERGTIPASALADSAAEPAPERRPDQPESTPHTTASP 898

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR--------- 788
                +   D T            PP  A     S +  +   +D  ++            
Sbjct: 899  ARADSAPADTTPVVQEPAVQTVPPPQPAASACASETAPQATGHDTPSLMVDAAASIPAPA 958

Query: 789  -------------RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
                           LK+      +       RG L H  +  L          E     
Sbjct: 959  STPDDDWRPMQWLPRLKIFRNQLEEFTFTERRRGMLVHACLEAL---HPTGAPREDAARA 1015

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
             +     F                   +   +    E   +   +        +  +   
Sbjct: 1016 VRHGIRAFPLPVPDEDAVAAE---LTTMLEWYAAQPET--AHWLRHGTPEQGILDAQG-- 1068

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
              L    D + +       + +YKTG        Q      L L
Sbjct: 1069 -RLH-RTD-LFVDDGNVRVVVEYKTGAPSPDHIEQVHRYLSLLL 1109


>gi|15639884|ref|NP_219334.1| hypothetical protein TP0899 [Treponema pallidum subsp. pallidum str.
            Nichols]
 gi|189026122|ref|YP_001933894.1| hypothetical protein TPASS_0899 [Treponema pallidum subsp. pallidum
            SS14]
 gi|3323228|gb|AAC65867.1| predicted coding region TP0899 [Treponema pallidum subsp. pallidum
            str. Nichols]
 gi|189018697|gb|ACD71315.1| hypothetical protein TPASS_0899 [Treponema pallidum subsp. pallidum
            SS14]
          Length = 195

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 47/158 (29%), Gaps = 17/158 (10%)

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF-VDIT 916
                 +    L+ + +       +      +           G  DRI        + + 
Sbjct: 9    ARIRHMVEFVLQFDAQRLDGWRVVRTEKAFEFTDTQCFYT--GLVDRISCSPDARSLAVL 66

Query: 917  DYKTGDNPKKETAQ------KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
            DYKTG  P            +L D Q+ +    L+   +       V + F++ ++++  
Sbjct: 67   DYKTGALPALSDYTDCEKKGRLSDFQIPMYVYLLEQAGY------TVTHAFFLDVRKRDF 120

Query: 971  IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008
               ++N +    A    +        ++   +     F
Sbjct: 121  KVIVSNGRVDMGAKRGVDTV--QFQAVMQRFEQSVAVF 156


>gi|315605038|ref|ZP_07880092.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313317|gb|EFU61380.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 932

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 77/730 (10%), Positives = 184/730 (25%), Gaps = 113/730 (15%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R     + G  +  +  + +           +            
Sbjct: 135 GQILAITFTNKAAAEMRERAGALVGGDARRM-WVSTFHSACVRLLRYEHEA--------- 184

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                   A L   +        + L      ++ +         K +A  I   + E  
Sbjct: 185 --------AGLSSSFTIYDAQDSQRLIQMVLKAMDVDIKRFTP--KMVAARISDAKNELI 234

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                     +         +  +  A   + +R+   NA       +  +    ++ + 
Sbjct: 235 GPARYGETAGKD------PVSRIVADAYVEYDKRMRASNALDFDDLIMRTVELLRDNPLI 288

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG----AIVLPGLDCHIPTAIWNTIT 275
                     I++     +  A   L+ T+          A +    D       +   T
Sbjct: 289 AEHYHRRFRHILVDEYQDTNHAQYVLVRTLVGDGKDGVAPAELTVVGDSDQSIYAFRGAT 348

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++      + + +             L+      + + + +N +  R+       L   
Sbjct: 349 IRNIEEFERDFSGARTIL---------LEQNYRSTQNILSAANAVIARNTGRRAKNLWTA 399

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALI 392
           + D                    + L  AD+E +EA  +      L  +  E     A+ 
Sbjct: 400 SGDGAL-----------------ITLDAADSEHDEARFVVAEIDRLADAGAEWG-DIAVF 441

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R ++  L R GI   +  G             + L  +   +D +A   ++  
Sbjct: 442 YRTNAQSRALEELLVRQGIPYRVVGGTRFYERREIKDALAYLQVVSNPDDTVAARRILNV 501

Query: 453 PLAKFGFPEKYLSRAK---------NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
           P    G   +                AL  +  R    + +   +    L R  +   ++
Sbjct: 502 PKRGIGAKAEEAIAEHAARYGISFGAALRHLWQRAGCPAGEGEGIDVEALARSTSPAADS 561

Query: 504 HVPHWQSRLSEEDKE--LAVLLVDHILQCITPLVTYKTNKNSTCGNLS------------ 549
                     +   E   A    D  +       +       T   ++            
Sbjct: 562 ARSSAPVSSDDAAGETPGARDGADESVAAAPASSSSAEGAPETAPEVAGITPRAAKAAAA 621

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE---------------- 593
                +                   L        L                         
Sbjct: 622 FWGLIEALRAAEAGGASQADILEEVLDRTGYLAQLRRSEDPQDASRVENLAELHSVAGAF 681

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                 A+  ++++ +  + D + V  + E+   + ++    ++ L F T+ + G+ +G 
Sbjct: 682 AAEAPGASLADFLERVALVADSDQVPAEGERGGQVTLMTVHTAKGLEFPTVFVTGMEDGT 741

Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
           +P   +    L+   + +   + A   I +A     +          RS          S
Sbjct: 742 FPHQRS----LADESELEEERRLAYVAITRARERLYLTRAA-----VRSAWGTPQEMPPS 792

Query: 714 RWLQRLLVLG 723
           R++  +    
Sbjct: 793 RFIDDIPAEL 802


>gi|221201440|ref|ZP_03574479.1| exodeoxyribonuclease V, gamma subunit [Burkholderia multivorans
           CGD2M]
 gi|221208005|ref|ZP_03581011.1| exodeoxyribonuclease V, gamma subunit [Burkholderia multivorans
           CGD2]
 gi|221172190|gb|EEE04631.1| exodeoxyribonuclease V, gamma subunit [Burkholderia multivorans
           CGD2]
 gi|221178708|gb|EEE11116.1| exodeoxyribonuclease V, gamma subunit [Burkholderia multivorans
           CGD2M]
          Length = 1112

 Score = 65.7 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 77/860 (8%), Positives = 185/860 (21%), Gaps = 47/860 (5%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I VP+    + L  +     G  + +     +       ++    +      P  S   
Sbjct: 35  QIIVPSAALRRRLELDIAARHGVCANVEFTYLA-------QWLWTQIGRVLDVPARSPFA 87

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN-AIWLAKNLADIIDIIETEEKKW 166
               + R   ++            P     L  S       LA  +A ++D   T   +W
Sbjct: 88  PDRLVWRCYRLFAQAPEHAPWLASPRLAAYLGASDDAMRYELAHRVATVLDHYLTYRPEW 147

Query: 167 EDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVEL-NASSPVGYQIALMRAEA 219
                                  A D  +  +  W   L EL ++ +P  ++  +   + 
Sbjct: 148 LAAWQAGESVLAADGAPRAIGEAARDDERWQAALWRALLAELSDSGAPPAHRFLVGARQI 207

Query: 220 EHLMKGT---KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
           +            + +       P    L+  ++   +  +            I      
Sbjct: 208 DADAISRIDWPESVSVFALPTMPPLHIALLRELSRWIDVRVYALNPCREFWFDIVTAAHA 267

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++ +               LA+       +   +  L   +        V + +      
Sbjct: 268 EALDAAGRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAALGDASRFVENPAPTWLAR 326

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                 D+              + +    +   +   +   L    D +           
Sbjct: 327 VQNAILDLQPEAALGEPPAERGIEVHVCHSLARQLEVLHDRLLGWFDADSSLQPSDVLVA 386

Query: 397 NLARRVKLELTRFGI----------NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                    L                  I+   P      + +L   L    +      +
Sbjct: 387 VADLAAAGPLIDAVFGTAGPGGARIPYRITGLPPSQANPVARVLLDWLALPERQVGAPEL 446

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              ++       +     +       L A    +    +    + V     T  +     
Sbjct: 447 VEWLRVDAVAARYGIDASALETVQTWLAAAGARRGLAPVAHDDAAVPTPRHTFSDALARL 506

Query: 507 HWQSRLSEEDKELAVLL---------VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                + +    +   L          + + +                   +   W++L 
Sbjct: 507 FLGYAMPDGAAPVGAWLPIEAATGSEAELLGRLARFTDDLDGFARRLADAHTPRGWSELF 566

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              L             L    +   L ++ + + E  +     A      +   +D   
Sbjct: 567 ADTLARFFDSGAAYADALAGVRD--ALDAMLAAMTEGAADEALPAAVVRAGLAAALDD-- 622

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                     +        R L +  + L G+++GV P     + F    +   L  +  
Sbjct: 623 PARGGVPWGGVTFSSLTSLRGLPYRIVCLLGMDDGVLPSLARADEFDLMAVLPKLGDRQR 682

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
                    D  +A   R LI        +   +    L   L+              + 
Sbjct: 683 RDDERNLFLDLLLAARDRLLIAYTGRSIRDNAPLPPAALVDELLDHLALVTAGPNAAPEA 742

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                R          +      P           + +  L+    +    R       P
Sbjct: 743 VDAARRAFIVEHPLQPFAAAYFRPDSTMASYDAERAALASLLAGDASRDGPREQPFFAQP 802

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
              +  +    G           +            ++     +                
Sbjct: 803 LPAEPAEPVPFGE-----FERFWRHPARALLRARLGIVLADAQAELLDTEPFALDFAGSD 857

Query: 858 HLFHKISHSFLEHEEKIQSS 877
            L  ++    +E +E     
Sbjct: 858 ALAERVLPLLIESDEAAAHD 877


>gi|256845410|ref|ZP_05550868.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|256718969|gb|EEU32524.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
          Length = 903

 Score = 65.7 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 53/396 (13%), Positives = 117/396 (29%), Gaps = 57/396 (14%)

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             N   +   +  L LKT E  I    + F     + + I   SL +++     S ++   
Sbjct: 513  NNNLFTEQQKIKLGLKTNEDEILIQKYRFFQNLLSLNKIDIYSLVDSDNNIDFSAFVYEF 572

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP--------FPPLEAQPRTYS 771
            +       +  L+        + + +    K  ++ + +             +       
Sbjct: 573  INK-----YTALENNTDNLKQYFKAIYSKEKTDNFFKDETFFRAYSKDKSDFKDNILKIG 627

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHF--KKDPDRTDRGTLFHNIITELIKKRINKNTP 829
              +  +L  D    +  +I  +                 G + H  + E+ ++       
Sbjct: 628  AYDYIELKKDETFFFLDKICGIKSSDEIVADIGISAKVLGNILHKTLEEIFRENWKNILQ 687

Query: 830  EINHLMK--QIIDSHFEKENLPPH----------IDIIWRHLFHKISHSF--LEHEEKIQ 875
               +L+    II+ + ++                I+ +           F  + +EE   
Sbjct: 688  SSENLLISNDIIEKYLKRNIWKEELKIEIFMKNYINEVLTPRLVSNIEKFFKVLYEELKG 747

Query: 876  SSIEKIFVNIPAK------MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
              I +I     +K      +  + I + L G AD +         I D+KTG    K+  
Sbjct: 748  EKILRIEAEKKSKTQDRAYLKYDEIEVFLNGRADLLIETS-KARYIVDFKTGG--YKKE- 803

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
                  QL   A                    +       + +      +K+  D+L EK
Sbjct: 804  ------QLEFYAIMFY--GSDNSLPIYSTAYNFW-----DEQEAKNFKFEKHLIDKLPEK 850

Query: 990  SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
                  E++      +     ++   + +  +S+YD
Sbjct: 851  -DSQFKELLIEFFKNK----YYVLPKKSALKESDYD 881


>gi|253687310|ref|YP_003016500.1| exodeoxyribonuclease V, beta subunit [Pectobacterium carotovorum
            subsp. carotovorum PC1]
 gi|251753888|gb|ACT11964.1| exodeoxyribonuclease V, beta subunit [Pectobacterium carotovorum
            subsp. carotovorum PC1]
          Length = 1194

 Score = 65.7 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 89/899 (9%), Positives = 206/899 (22%), Gaps = 107/899 (11%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + +  +        L  L         + A   ++ +      +  EL     +     
Sbjct: 317  ALFEETDRLLATPLSLRDLVI-------VRALSAIRESVSEEKRQRAELGFDDLLSRLDV 369

Query: 214  LMRA----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             ++          ++      +I     + P   R+  T+        +L   D      
Sbjct: 370  ALQQPGGERLASAIRERYPVAMIDEFQDTDPQQYRIFRTLYVGQPQCGLLLIGDPKQAIY 429

Query: 270  IWNTITEKSTNITSSNTTYST----------HPQYSLAKLLDFLDIKR-EDVKRLGNVSN 318
             +      +                         + + +L + L+            V  
Sbjct: 430  AFRGADIFTYMHARGEVAAHYTLGTNWRSSHQMVHGVNRLFERLEYPFIFQNIPFLPVKP 489

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPN-----IQKCFSDVALIEADNEREEAIS 373
                R +V   +  P        T      I +      ++C + +    A ++R EA  
Sbjct: 490  AESKRGLVFEVAGKPQPALQFWLTGSEPIGIGDYQQRMARQCAAQIRDWLAASQRNEAWL 549

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTS 432
            +               +++   R  A  ++  L+R  I  + +S    + +T  +S +  
Sbjct: 550  VTDD--SQRLVKASDMSVLVRSRREASLIRDALSRLSIPSVYLSNRDSVFSTPEASDMLW 607

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            LL A+        + + +   L      +                            +  
Sbjct: 608  LLQAVLAPEQERTLRSAMATALMGLDAGQVDAL-------------------GQSETAWD 648

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                                          L +++L             +        S 
Sbjct: 649  ALVDEFAGYRALWRQKGILPMLRALMSRHQLAENLLASAEGERRLTDILHIGELLQDASA 708

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI--IETGSCIKANAIEWIDIIT 610
                    ++ +     +  P    ++          +I  I     ++   +    I  
Sbjct: 709  TLDSEHALVRWLSQQIVQPNPQAENQQLRLESDRHLVQIVTIHKSKGLEYPLVWLPFISH 768

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS----R 666
              +  + +    E    +  L   E      +   L      ++   T      S     
Sbjct: 769  FRVQDQGIYHDRESYQAVLDLQNHEESQTLAEEERLAEDLRLLYVALTRSIYHCSVGVAP 828

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
            + +S     +++ +     +  +             L       +             T 
Sbjct: 829  IQRSRKKDGSSDMHQSALGYLLQRGKEAEAATLVSELEGMVGDGV-----------ALTP 877

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                 ++R Q       +L     +   +            +  S      +        
Sbjct: 878  LQATEEQRWQPDRPELAELRARHIERQLRDGWRVTSYSGLQQHGSAGAQDLVPRLDIEAI 937

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
              R    +        P     GT  H++   L   +   +      L  Q  ++H++  
Sbjct: 938  GERQEGDETQLTPHTFPRGASPGTFLHSLFETLDFTQPVDDGWLAEQLQLQGFEAHWQPV 997

Query: 847  N------------------LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                               L    +   +          +E   +          + P  
Sbjct: 998  LKAWMNTLLQTPLNEQGITLSALDNADKQAELQFYIP--IEAPIQAAQLDRLAKHHDPLS 1055

Query: 889  MAIESIGIH-----LTGFADRIDLLKSGFVDITDYK-----------TGDNPKKETAQKL 932
                ++        L GF D +   + G   + DYK           T     +  A+  
Sbjct: 1056 ARCPALSFQQVKGMLKGFIDLVFRWE-GRYYLLDYKSNWLGPDASAYTQTAMMQSMAEHR 1114

Query: 933  IDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
             D Q  L   AL      +I      R    +FY+ L+   +            + E  
Sbjct: 1115 YDLQYQLYTLALHRYLRHRIADYDYERHFGGVFYLFLRGVEESHPGNGIFACRPSAEFV 1173


>gi|111018834|ref|YP_701806.1| exodeoxyribonuclease V beta subunit [Rhodococcus jostii RHA1]
 gi|110818364|gb|ABG93648.1| exodeoxyribonuclease V beta subunit [Rhodococcus jostii RHA1]
          Length = 1103

 Score = 65.7 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 68/832 (8%), Positives = 166/832 (19%), Gaps = 75/832 (9%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMR--------AEAEHLMKGTKGPIIIAGSTG 237
             F +        R   +         + L R        A A   ++   G +++     
Sbjct: 211  AFAEAVRAEVERRKRAVGLRDFDDLPMLLHRVLSDPEHGAAACRRVRERYGVVLVDEFQD 270

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            + P    ++           V+   D       +    E  + + +  +        +  
Sbjct: 271  TDPLQWDILRR--TFHGSGTVVLVGDPKQAIYAFRGA-EVLSYLDAVRSADRHQELTTNW 327

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
            +    L    E +     + +       V         T           +        S
Sbjct: 328  RSDQELLDGLEYLHGGAALGHPEIVVHRVDGARPKSRLTGAAPLRLRYLPRTGAGPINKS 387

Query: 358  DVALIEADNEREEAISIAIALR------------MSLDENKKKSALITADRNLARRVKLE 405
                +    +R  A   A  +              +        A++         V   
Sbjct: 388  GYPAVGPLRKRIAADLAADVVALLDGGATLDVGGDTRLVEPGDIAVLVRTNAQITLVHDA 447

Query: 406  LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
            L R G+   ++ G  + TT  +     +L AI + +    +      PL      E    
Sbjct: 448  LDRAGVPSVLAGGASVFTTPAAQHWLWILQAIEQPHRSDRVRLAALTPLLGHTAEELDAR 507

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                  E+        +       + + +R++            +       +L  +   
Sbjct: 508  GDDIVAEVGGQLRELGAVFAQSGFAALFERLSAVAALEARLLRVAAGERALTDLRHVAQL 567

Query: 526  HILQCITPLVTYKTNKNSTCG------------NLSISDWTKLTVTCLQNVCLDEHRKLP 573
                 +   +                       +  +            +        L 
Sbjct: 568  LNGAAVEQSLGLTAVTRWLTERMKDPSSGGVDRSRRLDSDAAAVQIATVHASKGLEFPLV 627

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
             L +  +   +S     ++      +   +          D        E    L +L  
Sbjct: 628  YLPYAWDAAKISKPSKLLLHDDDGRRILDVGGPGSPG-YADRRNRHDAEEAGEELRLLYV 686

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
              +R +    +                        +      T  +    A         
Sbjct: 687  AVTRAMCGLVVWWAPAFTTAGAPLHRMILGRQPGQREVPQKVTVPEDPVVAERLSAWGTA 746

Query: 694  TRHLIYTRS------LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                +   +      +R    P    R                 +               
Sbjct: 747  APETVTVEAVGSDPIVRVGWTPQREPRGDLEAARFRRLLDTRWRRTSYSALTASAHDAPA 806

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
               +   +     P           +       +     A     +  +           
Sbjct: 807  VGSEAEVEEKTDEPAEPPLQAPADITSGVASTMNELPGGATFGTLVHAVFEIVDTAAPDL 866

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIID-----------------SHFEKENLPP 850
               +       +     + +  ++   +  ++                      + +   
Sbjct: 867  DAEVLRCCRDVIASTLSDIDPAQLATALLPVLRTPLGAGAETTLADIAPADLLAELDFEL 926

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLL 908
             +          +     E         + +     A   +E   +   LTG  D +  L
Sbjct: 927  PLAGGDTPSLTVMLDGVGELLRTHLPVDDPLRSYADAVQTLEPTPLRGYLTGSIDAVLRL 986

Query: 909  KSGFVDITDYKTGD--------------NPKKETAQKLIDPQLSLEAAALKA 946
                  + DYKT                +   E  +     Q  L + AL  
Sbjct: 987  PGPRYVVVDYKTNRLAQGDLTTAHYTRESMAAEMVRAHYPLQALLYSVALHR 1038


>gi|300312090|ref|YP_003776182.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300074875|gb|ADJ64274.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 707

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 58/567 (10%), Positives = 131/567 (23%), Gaps = 63/567 (11%)

Query: 2   HNKKPNVFTIA-PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAI--- 57
            +++P +  +A   S     +         V     +  +P     + +   ++RA    
Sbjct: 42  PSQQPPLLIVAGAGSGKTNTLA------HRVARLVLEGADPQ---RILLLSFSRRAAADM 92

Query: 58  -QELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
            + +     ++ G  ++  P                          V  ++    +    
Sbjct: 93  GRRVGQVIAQVLGLAASDTPPQLHWSGTFHAI----GARLLREYAKVIGLEEDFTIQD-- 146

Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
                 L  +++     S             LA         I +             ++
Sbjct: 147 RGDSEDLMGLLRHDMGLSATEKRFPLKATC-LA---------IYSRAVNTRQDLGEVLQQ 196

Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK----GTKGPIII 232
           +  W       L      + +   E +        +       +  +          +++
Sbjct: 197 HFPWCCEWERPLGELFGRYVDAKEEQHVLDYDDLLLFWADMLGDAQIAQSVGQRFDHVLV 256

Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
                +    A ++  +   P+GA V    D       +   T ++        T     
Sbjct: 257 DEYQDTNRLQAEILQRMK--PDGAGVTAVGDDAQAIYSFRGATVRNILDFPGLFTQPV-- 312

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
              L  L       +  +     V  +   R +    S  P                   
Sbjct: 313 --RLLTLEQNYRSTQPILHASNAVIADAPERHVKHLWSDKPSSQKP-------------- 356

Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFG 410
                   L+   +E E+A  +A  +    +E    K  A++      +  ++LEL R  
Sbjct: 357 -------QLVVIPDEAEQARWVANRILAHREEGLTLKSQAVLFRTATHSAALELELARRN 409

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
           I      G+    + H   L +LL      +  MA    ++          + +     A
Sbjct: 410 IPFVKFGGLKFLESGHIKDLLALLRLAHNPSGRMAGLRALQLIPGVGPATARKVLDLMAA 469

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
               A                                W + +          L +     
Sbjct: 470 AADPADALLNFGAPANIALQWQAFADTYALMRRASASWPTDILAARDWYLPQLQERYDDA 529

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLT 557
                  +       G  S   +    
Sbjct: 530 QARAADIEQLAVLANGYASREKFLTEL 556


>gi|15639883|ref|NP_219333.1| ATP-dependent nuclease, subunit A, putative [Treponema pallidum
            subsp. pallidum str. Nichols]
 gi|189026121|ref|YP_001933893.1| ATP-dependent nuclease, subunit A [Treponema pallidum subsp. pallidum
            SS14]
 gi|3323214|gb|AAC65853.1| ATP-dependent nuclease, subunit A, putative [Treponema pallidum
            subsp. pallidum str. Nichols]
 gi|189018696|gb|ACD71314.1| possible ATP-dependent nuclease, subunit A [Treponema pallidum subsp.
            pallidum SS14]
 gi|291060257|gb|ADD72992.1| ATP-dependent DNA helicase UvrD [Treponema pallidum subsp. pallidum
            str. Chicago]
          Length = 1239

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 98/934 (10%), Positives = 212/934 (22%), Gaps = 200/934 (21%)

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIA 233
             + +  +  L++    +  +  E N  S        ++   ++       K      +I 
Sbjct: 354  PFLVALSSLLELLQARFIRQKRERNCLSHADVAHLAVQVLRQYPEIRVSYKRGIDAFMID 413

Query: 234  GSTGSIPATARLMSTVANHPNG-------------AIVLPGLDCHIPTAIWNTITEK--- 277
                +      L+  +A H                  +    D       +     +   
Sbjct: 414  EFQDNNALQKELLFFLAEHEARTAHFLPPAHALCAHKLFFVGDEKQSIYAFRGADVRVFR 473

Query: 278  -----------STNITSSNTTYSTHPQYSL----------AKLLDFLDIKREDVKRLGNV 316
                         +      + +   Q +L          A LL+ L+I    + R  + 
Sbjct: 474  SLAGVLTPQVSGASQQELPLSAAAELQPTLQTLRINYRTEAALLERLNILFSHILRGPSE 533

Query: 317  SNEM-------------------YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
            S E                        ++                          +   S
Sbjct: 534  SAENGYEVGFQYMQPARCTAGIEPQFRVIGVDRHRFSRPEHEAQHSAARPTPQAGRTGAS 593

Query: 358  DVALIEADNEREEAISIAIALRMSLDE--------------NKKKSALITADRNLARRVK 403
            + +      +  EA ++A A+R  +D                     ++    +   R +
Sbjct: 594  EDSEDSLSAQETEAWALARAIRAMVDGGTLVRHKGEAPRACTWADVVILLRSADKQARYE 653

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L  +GI         +      S L + L  + +  D    A +++ P  +       
Sbjct: 654  RALRLWGIPYTSLQTRGMFCDAPLSDLLAPLRLVLEPADRHVYAQVLRGPFVRVDD---- 709

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                                                          +  S    EL+   
Sbjct: 710  --------------------------------DTLSLLLLPPAPPDAPFSYIPAELSAPA 737

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
               +          +        N  +  +   T      +  D   +  ++ ++   + 
Sbjct: 738  ARCVRAGADFFARVQQQVRRLATNTELLTYLWYTEAYGTLLAQDPLARPYHVIYDYAFEL 797

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                  +    G  +              ++   +         + I+   +S+ L F  
Sbjct: 798  ARRADRQGKGIGEFLDFVDACLSA--QERVEELELPCTDRACGAVQIMSVHKSKGLEFPI 855

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE--------KYIGQAAHDFEMANGTR 695
            + +                  S        L   E        +   +A           
Sbjct: 856  VCVPDAGSSGPRVMARVGAVHSPYGYIPRFLPHPEGVHPIFVQEQDTRARAYRAELRRVL 915

Query: 696  HLIYTRSL-----------RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
            ++ +TR+             + +     SR L  +  L  +            + +    
Sbjct: 916  YVAFTRAECHVIVSGVLPISDGHPAPAVSRSLADICSLLPSGDGSEPPSSLSFFSELLPA 975

Query: 745  LDYTTKQPHYKR--------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
            L +    P +                P   P    +  T S  +     + P   YA   
Sbjct: 976  LMHAAPLPPHPSPSVVPAPVSFDECLPLARPQAYQRALTGSARQSVPQASAPRDWYAAVP 1035

Query: 791  LKLD--------------------------FIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
            ++                              P   + P   + GT  H ++ ++ +   
Sbjct: 1036 VRAPHYYPRLVQPVTSLVSPAPGQNSASASPSPLTPQSPRGVEFGTHVHELLAQVFQSPA 1095

Query: 825  NKNTPEINHLMKQIIDSHFE-KENLPPHIDIIWRHLFHKISH-SFLEHEEKIQSSIE--K 880
                      +            + P            + +  SFL              
Sbjct: 1096 PTVALHSVQRVDSPAARLVACFLHSPLGCRACAAPAHQRFAEFSFLT----RAPGNTKPP 1151

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
                  A            G  D +  L +G   + DYKT      E       PQL   
Sbjct: 1152 HGAEYQA------------GTIDLLF-LSNGVWHLVDYKT----DYEEHPARYLPQLQHY 1194

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
            A A++   FS       A L+Y+R   +F ++ +
Sbjct: 1195 ARAVQD-LFSDHPV--TAFLYYLRTGHEFSLEAL 1225


>gi|94265519|ref|ZP_01289267.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
 gi|93453960|gb|EAT04306.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
          Length = 775

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 82/750 (10%), Positives = 191/750 (25%), Gaps = 117/750 (15%)

Query: 12  APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
            P          +    TLV    +          + +   T++A QE+ +        +
Sbjct: 45  PPGPILVIAGAGSGKTRTLVHRLAWLVEQGTPPEQLLLLTFTRKAAQEMTA--------R 96

Query: 72  STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
           +  L     L              + NL       +    +            D    + 
Sbjct: 97  AGWL-----LDGSCRRVTGGTFHATANLLLRRYATR----IGYQANFSIIDQSDAEGIIN 147

Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                             + +  I+           DL   ++E    +     D +   
Sbjct: 148 LLKSSLGLGGAGRRFPSRRLILGILSKAVNVGSSVSDLVEAEHEHLAEF----LDDILAI 203

Query: 192 SKYWTERLVELNASS-----PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
           ++++ +  ++              ++     E    +      I++     + P  A ++
Sbjct: 204 NQHYQQFKLDHGLMDYDDLLLNWRRLLRDDREVREELAQRFQAILVDEYQDTNPIQAEIV 263

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
             +A       V+   D       +     ++      +   +      + +L +     
Sbjct: 264 RLLA--AQRRNVMAVGDDAQSIYSFRGADFRNIMEFPDHFPGT-----RVVRLEENYR-- 314

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                     S            +  P        + +     P             A N
Sbjct: 315 ----------SIPQILEVGNAIIAPAPVKYPKKLFSRLEGGSRPL---------FHAARN 355

Query: 367 EREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
           E E+A  +   ++    E +  + A++      + +++LELT  GI+ +   G+ L+ + 
Sbjct: 356 ESEQARFVVEKIKELRRELDASQIAVLFRSGFHSYKLELELTANGIDFEKRGGLKLTESA 415

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
           H   + +    +    D ++   L+             +      LE VA  G+      
Sbjct: 416 HIKDVLAHFRVLCNPADRLSWHRLLLLLDKIGPKTAARIIDRLPLLEQVAGPGDGQRPLD 475

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
             L +L                      E  ++L  LL D     + P            
Sbjct: 476 GSLAALKAF------------PAGKAWGEGMQKLLQLLADINDPGLAP------------ 511

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
                    +L    L        R  P+ +             ++    +  ++     
Sbjct: 512 --------AELLEQVLIYYQPLLRRLYPDDYPRR-----QRDLEQLRPLLAGYESMDDFL 558

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            ++    +D  + +   +    L +     ++ L ++ + +  L EG +P N A      
Sbjct: 559 AEL---ALDPSSPEVDDDGGGRLVLSTVHSAKGLEWEAVFVIHLAEGKFPANQAVG---- 611

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIP-----TIASRWLQRL 719
                      A +Y  +    +  A   +  L      +             S +L  L
Sbjct: 612 -----------AAQYEEERRLLYVAATRAKRWLYLVYPRQSTGADRRPLFCEPSPFLAPL 660

Query: 720 LVLGGTDFFDNLKKRGQC-YLDWTRKLDYT 748
                       +  G+  +       D  
Sbjct: 661 PPELLRGSGSGGEAAGRPDWPSAPPAGDDP 690


>gi|186475566|ref|YP_001857036.1| UvrD/REP helicase [Burkholderia phymatum STM815]
 gi|184192025|gb|ACC69990.1| UvrD/REP helicase [Burkholderia phymatum STM815]
          Length = 750

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 78/741 (10%), Positives = 184/741 (24%), Gaps = 114/741 (15%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITG----------KKSTILPIIKSLGDVVEEKFTADLLL 95
            + +   ++RA  E+      I G          +  T      S+G     +   +   
Sbjct: 103 RILLLTFSRRAALEMTRRVTRIAGMALGTRGALAQGLTWSGTFHSVG----ARLLREYAD 158

Query: 96  SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155
              L+P  +   R    A L+ + R++L    K+    S  +     +  +    +LAD+
Sbjct: 159 LIGLSPSFTINDREDS-ADLLNLVRHELGFSAKEKRFPSKSACFAIYSRVVNTGASLADV 217

Query: 156 IDIIETEEKKWE-DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
           ++      ++WE DL  L           +         YW+    E             
Sbjct: 218 LNSAFPWCREWEADLRMLFAAYVDAKQKQSVLDYDDLLLYWSHMAAEP------------ 265

Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
                   + G    +++     +    A ++  +   P+G  +    D       +   
Sbjct: 266 ---AIAADLSGRFDHVLVDEYQDTNRLQASILLALK--PDGRGLTVVGDDAQSIYSFRGA 320

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
           T ++     ++      P      L               +    +   + VI  +    
Sbjct: 321 TVRNILDFPAHFD----PPARQVTLERNYR----------STQPILEASNAVIGLASERY 366

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALI 392
             +   +    +              L+   ++ ++A  +   +  + +     K  A++
Sbjct: 367 TKNLWTDKPSAQRP-----------HLVTVADDADQARYVVEQVLAAREAGMKLKSQAVL 415

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
               + +  +++ELTR  I      G+    ++H   + S+L                  
Sbjct: 416 FRAAHHSATLEIELTRRNIPFVKFGGLKFLDSVHVKDVLSVLRWAENP------------ 463

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
                        R    L  V         D +  ++  L      +    V    +  
Sbjct: 464 ------RDRVAGFRVVQLLPGVGPATAARVLDDIAARADALGSAGGLEAAHGVSTCAAGA 517

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
                  A  L D                        +  W +     LQ    D   + 
Sbjct: 518 LTAFAPPARTLEDWHPFVAMMASVCGRQTPWPAEFEMVRRWYEPH---LQRNHEDASIRQ 574

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
            +L   E      +   + +   +    +A             +     +     L +  
Sbjct: 575 ADLVQMESIAGTYASRERFLTELTLDPPDAT-----------SDESGVPLIDEDYLILST 623

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++   +  + +    +G  P              SDL   + E+   +    +    
Sbjct: 624 IHSAKGQEWRNVFVLNGVDGCIP--------------SDLGTGSEEEIDEERRLLYVAMT 669

Query: 693 GTRH--------LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
             +           Y  +        + +   + +       F  +           T  
Sbjct: 670 RAKEDLHIVMPQRFYVHNQTHLGDRHVWASRTRFIPPHLLPLFDSHAWPPAPVASAPTEM 729

Query: 745 LDYTTKQPHYKRPKPFPPLEA 765
                 Q   +       +  
Sbjct: 730 GLAAAAQAKIEIAAKLRKMWD 750


>gi|288560394|ref|YP_003423880.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
            ruminantium M1]
 gi|288543104|gb|ADC46988.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
            ruminantium M1]
          Length = 1546

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 26/204 (12%)

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
            P      + +  T S+S I+   + P+  +     K           +    G + HN +
Sbjct: 1281 PNVIVIEDDKKLTLSYSSIQTYESCPFQYHLAYNYKFKISDR-----EAITEGNINHNSL 1335

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHF-----------EKENLPPHIDIIWRH---LFHK 862
             E+ K  I +   +   L+ +I +                    P+ID        +   
Sbjct: 1336 EEINKTIIERKDEKEGELVGEIDNELLISRDEIIKIVKRIYMESPNIDRDETPIDYVLSN 1395

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
            I   +  +        + I       +  E     L G  D +    +G + I DYKT +
Sbjct: 1396 IFEYWDNY----GRRFDIIGSEYQFDINREDY-FVLIGSIDLLYKTDNG-IVILDYKTTE 1449

Query: 923  NPKKETAQKLIDPQLSLEAAALKA 946
            N  K+  +K    QL   A ALK 
Sbjct: 1450 NISKKAQEK-YKKQLYTYALALKD 1472


>gi|71414808|ref|XP_809492.1| vesicular transport-associated repeat protein [Trypanosoma cruzi
            strain CL Brener]
 gi|70873884|gb|EAN87641.1| vesicular transport-associated repeat protein, putative [Trypanosoma
            cruzi]
          Length = 1174

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 73/788 (9%), Positives = 170/788 (21%), Gaps = 27/788 (3%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
             LA    + R       + L  E         A A  LA+                    
Sbjct: 294  RLAEEAEVRRLAEEAEARRLAEEVEARRLAEEAEARRLAEE------------------E 335

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
            A                   A +   E       +     +     AEA  L +      
Sbjct: 336  AEARRLAEEAEARRLAEEAEARRLAEEEAEARRLAEEAEARRLAEEAEARRLAEEAAEAR 395

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
             +A    +     RL    A                  A    + E++     +      
Sbjct: 396  RLAEEAEA----RRLAEEAAEARRLTEEAAEARRLAEEAEARRLAEEAEARRLAEEAAEA 451

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
                  A     L  +  + +RL     E    +   +++    +          E +  
Sbjct: 452  RRLAEEAAEARRLAEEAAEARRLAEEEAEARRLAEEAAEARRLAEEEAEARRLAEEAEAR 511

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
             + +      L E    R  A       R   +E  +   L        R  +       
Sbjct: 512  RLAEEAEARRLAEEAEARRLAEEAEA--RRLAEEAAEARRLAEEAAEARRLAEEAAEARR 569

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
            +  + +    L+    +  L        +L +  A A  +    A+     +  + A+  
Sbjct: 570  LAEEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAAEARRLAEEEAEARRL 629

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
             E    R      +   L     +     +        +   +    E A        + 
Sbjct: 630  AEEAEARRLAEEAEARRLAEEAAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEA 689

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                +  +  +       +            + +  +   +      E       +  ++
Sbjct: 690  EARRLAEEAAEARRLTEEAAEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAAEAR 749

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL--GTLESRLLNFDTLILGG 648
             +   +       E      RL + E    ++ + +    L     E+R L  +      
Sbjct: 750  RLAEEAAEARRLAEEAAEARRLAEEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARR 809

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
            L E             +R +  +           +A    E A   R L    +      
Sbjct: 810  LAEEAAEARRLAEEAEARRLAEEAAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLA 869

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                +R L               ++  +         +    +   +       L  +  
Sbjct: 870  EEAEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEEAEARRLAEEEA 929

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
                   ++      A  A    +L       +     +             ++   +  
Sbjct: 930  EARRLAEEEAEARRLAEEAAEARRLTEEEAEARRL-AEEAAEARRLAEEAESRRLAEEAA 988

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                   +        +E               +++          ++   ++     A 
Sbjct: 989  EARRLAEEAAEARRLAEEAAEARRLAEEAAEARRLAEEAEARRLAEEAEGSRLAEEKKAH 1048

Query: 889  MAIESIGI 896
                +  +
Sbjct: 1049 FLAGAEDV 1056



 Score = 63.0 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/617 (10%), Positives = 155/617 (25%), Gaps = 9/617 (1%)

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             +                  LA+ ++   +  E   R          R    +++    
Sbjct: 292 ARRLAEEAEVRRLAEEAEARRLAEEVEARRLAEEAEARRLAEEEAEARRLAEEAEARRLA 351

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
           + ++ R     E +   + +      L E    R  A   A A R++ +   ++ A    
Sbjct: 352 EEAEARRLAEEEAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAEARRLA---E 408

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
           +   ARR+  E        + +    L+    +  L        +L +  A A  +    
Sbjct: 409 EAAEARRLTEEAAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEA 468

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK---SLVLDRIATQKNNTHVPHWQSR 511
           A+     +  + A+   E  A        +    +        R+A +     +      
Sbjct: 469 AEARRLAEEEAEARRLAEEAAEARRLAEEEAEARRLAEEAEARRLAEEAEARRLAEEAEA 528

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
               ++  A  L +   +           +             +      +     E R+
Sbjct: 529 RRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAAEARRLAEEEAEARRLAEEAEARR 588

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
           L     E       +  ++ +   +       E      RL +    +   E++    + 
Sbjct: 589 LAEEAAEARRLAEEAAEARRLAEEAAEARRLAEEEAEARRLAEEAEARRLAEEAEARRLA 648

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
                     +      L E    +  A+    +R +  +   +   +   +A    E A
Sbjct: 649 EEAAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAEARRLAEEAAEARRLTEEA 708

Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
              R L      R       A R  +        +     ++  +   +  R  +   + 
Sbjct: 709 AEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAAEA 768

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                 +      A+         +       A  A    +L       +          
Sbjct: 769 RRLAEEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAAEARRLAEEA---E 825

Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
              +  E  + R      E   L ++  ++    E       +       +++       
Sbjct: 826 ARRLAEEAAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAEARRLAEEAEARR 885

Query: 872 EKIQSSIEKIFVNIPAK 888
              ++   ++     A+
Sbjct: 886 LAEEAEARRLAEEAEAR 902



 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 74/761 (9%), Positives = 175/761 (22%), Gaps = 16/761 (2%)

Query: 126  IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
              + L  E+ +      A A  LA+ +       E E ++  +  A              
Sbjct: 291  EARRLAEEAEVRRLAEEAEARRLAEEVEARRLAEEAEARRLAEEEAEARRLAEEAEARRL 350

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
                 A +   E       +     +     AEA  L +       +A    +     RL
Sbjct: 351  AEEAEARRLAEEEAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAEA----RRL 406

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
                A                  A    + E++     +            A     L  
Sbjct: 407  AEEAAEARRLTEEAAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAE 466

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
            +  + +RL     E    +   +++    +          E +   + +      L E  
Sbjct: 467  EAAEARRLAEEEAEARRLAEEAAEARRLAEEEAEARRLAEEAEARRLAEEAEARRLAEEA 526

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
              R  A       R   +E  +   L        R  +       +  + +    L+   
Sbjct: 527  EARRLAEEAEA--RRLAEEAAEARRLAEEAAEARRLAEEAAEARRLAEEEAEARRLAEEA 584

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
             +  L        +L +  A A  +    A+     +  + A+   E    R      + 
Sbjct: 585  EARRLAEEAAEARRLAEEAAEARRLAEEAAEARRLAEEEAEARRLAEEAEARRLAEEAEA 644

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              L     +     +        +   +    E A        +     +  +  +    
Sbjct: 645  RRLAEEAAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAEARRLAEEAAEARRL 704

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
               +            + +  +   +      E       +  ++ +   +       E 
Sbjct: 705  TEEAAEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEE 764

Query: 606  IDIITRLIDGETVKPKIEKSSTLFIL--GTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                 RL + E    ++ + +    L     E+R L  +      L E            
Sbjct: 765  AAEARRLAEEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAAEARRLAEEA 824

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
             +R +  +           +A    E A   R L    +          +R L       
Sbjct: 825  EARRLAEEAAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAEARRLAEEAEAR 884

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                    ++  +         +    +   +       L  +         ++      
Sbjct: 885  RLAEEAEARRLAEEAEARRLAEEAAEARRLAEEEAEARRLAEEEAEARRLAEEEAEARRL 944

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
            A  A    +L       +                 L ++  ++   E     +++ +   
Sbjct: 945  AEEAAEARRLTEEEAEARRLAEEA------AEARRLAEEAESRRLAEEAAEARRLAEEA- 997

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
              E      +        + +       E+ ++        
Sbjct: 998  -AEARRLAEEAAEARRLAEEAAEARRLAEEAEARRLAEEAE 1037



 Score = 58.0 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 62/676 (9%), Positives = 151/676 (22%), Gaps = 7/676 (1%)

Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
            AEA  L +  +   +   +     A       +A       +          A      
Sbjct: 289 EAEARRLAEEAEVRRLAEEAEARRLAEEVEARRLAEEAEARRLAEEEAEARRLAEEAEAR 348

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
             +    +            LA+  +   +  E   R          R    +++    +
Sbjct: 349 RLAEEAEARRLAEEEAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAEARRLAE 408

Query: 336 TSDMRNTDILEN-KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
            +        E  +   + +      L E    R  A   A A R++ +  + +   +  
Sbjct: 409 EAAEARRLTEEAAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARR--LAE 466

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
           +   ARR+  E        + +A         +        A  +     A A  +    
Sbjct: 467 EAAEARRLAEEEAEARRLAEEAAEARRLAEEEAEARRLAEEAEARRLAEEAEARRLAEEA 526

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                 E+  +R        A R  + + +   L     +     +              
Sbjct: 527 EARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAAEARRLAEEEAEARRLAEEAEA 586

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ--NVCLDEHRKL 572
                       + +                         +      +   +  +   + 
Sbjct: 587 RRLAEEAAEARRLAEEAAEARRLAEEAAEARRLAEEEAEARRLAEEAEARRLAEEAEARR 646

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
                 E  +      ++ +   +  +  A E  +      + E  +   E +    +  
Sbjct: 647 LAEEAAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAEARRLAEEAAEARRLTE 706

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
                    +      L E    +  A+     R+ +     +   +   +A    E A 
Sbjct: 707 EAAEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAA 766

Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR--GQCYLDWTRKLDYTTK 750
             R L    +          +R L            +  + R   +   +  R  +    
Sbjct: 767 EARRLAEEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAAEARRLAEEAEA 826

Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
           +   +       L  +      +E            A      +     +   +   R  
Sbjct: 827 RRLAEEAAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAEARRLAEEAEARRL 886

Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
                   L ++   +   E     +++ +   E   L        R    +     L  
Sbjct: 887 AEEAEARRLAEEAEARRLAEEAAEARRLAEEEAEARRLAEEEAEARRLAEEEAEARRLAE 946

Query: 871 EEKIQSSIEKIFVNIP 886
           E      + +      
Sbjct: 947 EAAEARRLTEEEAEAR 962



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 61/649 (9%), Positives = 134/649 (20%), Gaps = 9/649 (1%)

Query: 81   LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
            L +   E                +  +RL E A        +  +  +     +      
Sbjct: 416  LTEEAAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAAEARRLA 475

Query: 141  SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                        A     +  EE +   L      +       A    + A         
Sbjct: 476  EEEAEARRLAEEAAEARRLAEEEAEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEA 535

Query: 201  ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
            E    +    +   +  EA    +  +                RL               
Sbjct: 536  EARRLAEEAAEARRLAEEAAEARRLAEEAAEARRLAEEEAEARRLAEEAEARRLAEE--A 593

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
                 +                +            LA+  +   +  E   R        
Sbjct: 594  AEARRLAEEAAEARRLAEEAAEARRLAEEEAEARRLAEEAEARRLAEEAEARRLAEEAAE 653

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
              R    +++    + ++ R       +   + +      L E   E       A   R 
Sbjct: 654  ARRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAEARRLAEEAAEARRLTEEAAEARR 713

Query: 381  SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
              +E + +            R   E        + +A         +        A    
Sbjct: 714  LAEEAEAR----RLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAAEAR 769

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
                  A   +             +     L   A    + + +  + + L  +  A + 
Sbjct: 770  RLAEEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAAEARRLAEEAEARRL 829

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                    +     E + LA    +            +  + +    L+     +     
Sbjct: 830  AEEAAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAEARRLAEEAEARRLAEE 889

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
             +   L E  +   L  E      +   ++       +     E   +     +   +  
Sbjct: 890  AEARRLAEEAEARRLAEEAA---EARRLAEEEAEARRLAEEEAEARRLAEEEAEARRLAE 946

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
            +  ++  L        RL            E    +   +     R+ +     +   + 
Sbjct: 947  EAAEARRLTEEEAEARRLAEEAAEARRLAEEAESRRLAEEAAEARRLAEEAAEARRLAEE 1006

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
              +A    E A   R L      R        SR  +           D
Sbjct: 1007 AAEARRLAEEAAEARRLAEEAEARRLAEEAEGSRLAEEKKAHFLAGAED 1055



 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/634 (9%), Positives = 143/634 (22%), Gaps = 12/634 (1%)

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
           +P  D    T       +K+     S +  + H +++   +L  L  KR   K       
Sbjct: 214 IPCGDQTKQTKYMRHQIKKTGITEESISRINQHDEFNKEDILRQLTDKRIQKKGNDLRKT 273

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS--IAI 376
                +   +   +    +     +    ++    +       +EA    EEA +  +A 
Sbjct: 274 TNSTNTKEEANISVKEAEARRLAEEAEVRRLAEEAEARRLAEEVEARRLAEEAEARRLAE 333

Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
               +    ++  A   A+   ARR+  E        + +    L+    +         
Sbjct: 334 EEAEARRLAEEAEARRLAEEAEARRLAEEEAEARRLAEEAEARRLAEEAEAR------RL 387

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
             +  +   +A   +         E      + A         +      + ++  L   
Sbjct: 388 AEEAAEARRLAEEAEARRLAEEAAEARRLTEEAAEARRLAEEAEARRLAEEAEARRLAEE 447

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
           A +         ++R   E+   A  L +   +           +             + 
Sbjct: 448 AAEARRLAEEAAEARRLAEEAAEARRLAEEEAEARRLAEEAAEARRLAEEEAEARRLAEE 507

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                     +  R           +   +      E     +                E
Sbjct: 508 AEARRLAEEAEARRLAEEAEARRLAEEAEA-RRLAEEAAEARRLAEEAAEARRLAEEAAE 566

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
             +   E++    +    E+R L  +      L E                  ++   + 
Sbjct: 567 ARRLAEEEAEARRLAEEAEARRLAEEAAEARRLAEEAAEARRLAEEAAEARRLAEEEAEA 626

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                   A         R L    +          +R L                +R  
Sbjct: 627 RRLAEEAEARRLAEEAEARRLAEEAAEARRLAEEAEARRLAEEAEARRLAEEAAEARRLA 686

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
              +  R  +   +              A+         +            R L  +  
Sbjct: 687 EEAEARRLAEEAAEARRLTEEAAEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAA 746

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
              +   +  +   L          +R+ +   E   L ++       +E          
Sbjct: 747 EARRLAEEAAEARRLAEEAAE---ARRLAEEEAEARRLAEEAEARRLAEEAAEARRLAEE 803

Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                +++    E     + +  +      A+  
Sbjct: 804 AAEARRLAEEAAEARRLAEEAEARRLAEEAAEAR 837


>gi|302524381|ref|ZP_07276723.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302433276|gb|EFL05092.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 286

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 75/264 (28%), Gaps = 12/264 (4%)

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                +    S + +    + P       + +             +  G + HN +  L  
Sbjct: 12   EQPQRLTKVSPARLSTFDDCPRRYRLAYLDRPTPQRT--GPWAHSTLGAVVHNALRALFD 69

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE-HEEKIQSSIEK 880
              + K TP+    +           +        +R         ++E ++        +
Sbjct: 70   LPVAKRTPQRAIALVAEHWKDAGFADDDQAAR--YRARAKGWVAEYVEDNDVSDDPVGLE 127

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
             +V+ P         + + G ADRID    G + I DYKTG     E   +     L++ 
Sbjct: 128  RWVSAPVSTTGGRPTMIIEGRADRIDQRG-GELVIVDYKTGRRAPDEHEARASQA-LAMY 185

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
            A A            ++       L            +      E +E++  +L      
Sbjct: 186  AVAASRTLRMPCTKVELH-----HLPSGTIAAADHTPETLKRHLERAEETAGDLRVAADT 240

Query: 1001 LQNGEQPFISHLRLSEKSNIQSEY 1024
            L  G    +      ++     ++
Sbjct: 241  LDAGGDGDVLFPARPDRRCAWCDF 264


>gi|296130267|ref|YP_003637517.1| exodeoxyribonuclease V, gamma subunit [Cellulomonas flavigena DSM
           20109]
 gi|296022082|gb|ADG75318.1| exodeoxyribonuclease V, gamma subunit [Cellulomonas flavigena DSM
           20109]
          Length = 1128

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 97/884 (10%), Positives = 215/884 (24%), Gaps = 53/884 (5%)

Query: 23  PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82
             +L   L +     P      A   + VPT+   + +        G  S     + +  
Sbjct: 7   TDVLVDALADLLADVPPGTDPFAREVVAVPTRGVERWVAQRLSHRLGAGSAGEAGVCARI 66

Query: 83  D------VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP---DIIKDLYPE 133
           D      +V +   A    S + +P          L  +       LP    + + +   
Sbjct: 67  DMGSPTRLVRDAVAAATGTSRDDDPWEPERLVWHVLQAVDEAVAAGLPWAEPLARHVQDP 126

Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193
                 +     + LA+ LA        +        A   +  G    L  D +   + 
Sbjct: 127 PGARDDVRAGRRLRLAQRLAAGFAAYAAQRPSLVMEWAAGRDDDGAGDPLPTD-VAWQAP 185

Query: 194 YWTERLVELNASSPVGYQIALMRAE-AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            W      +   SP        RA  A+  +      + + G T    A   +++ +A H
Sbjct: 186 LWRAVRAAVGTPSPAELLAEATRALRADPDLVDLPTRLSVLGPTRLPQAHVEVLTALAAH 245

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP-QYSLAKLLDFLDIKREDVK 311
            +  + LP     +      T         +        P       L        E   
Sbjct: 246 RDVHVWLPHPSRALWERTAATAGRADVGGPTVAPRRRDVPAPARHPLLASTARDTTELAL 305

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
           RL     ++           +          D               V +        + 
Sbjct: 306 RLTATGADVTHHPAPAPPPTVLGALQAALRADERPAARAVAAPGDRTVQVHACHGRGRQV 365

Query: 372 ISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL---------------TRFGIN 412
             +  A+   L +      +   ++  D      +                       + 
Sbjct: 366 EVLREAVLGLLADDPTLQPRDVVVLCPDVEAFAPLVAAAFGAPAEDEADRATVHPGRTLR 425

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAK 468
           + ++   P  T     +L +LL+          +  L   P       F        RA 
Sbjct: 426 VRVADRAPARTNPLLRVLVALLDLAGSRVTASGVVDLAGLPAVRRRFGFDDAAAERLRAW 485

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL----- 523
                V    +++      L  +      T  +   +    +         A+ L     
Sbjct: 486 ALESGVRWGEDQDRRARYGLGRVPQGTWRTGTDRLLLGVAMAEEDHRYVGSALPLDDVDS 545

Query: 524 --VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             VD   +    +       +   G    S W       L  +   +    P   ++E G
Sbjct: 546 TDVDLAGRFAELVDRVTGLLDELDGARPASAWFDALERALVLLTAAD----PTDAWQEVG 601

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
                  ++    G+ +     + + ++   + G   +    ++  L +      R +  
Sbjct: 602 ARAVLADARASAAGADVPLRLPDVVALLEPRLGGRPTR-AGFRTGALTVCSLEPMRAVPH 660

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
             + L GL++G +P+  A +      + +   L        +    F  A          
Sbjct: 661 RVVCLLGLDDGAFPRAGAPD---GDDVLARDPLVGERDRRAEDRQLFLDAVTAAGDHLVV 717

Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
                +  T A R     +        + +             + +  +    +   P  
Sbjct: 718 VHSGADERTGAPRPPAVPVGELLDAVDEAVAFADGRTSRGALVVHHPLQTVDERNFAPGA 777

Query: 762 PLEAQPRTYSF--SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                P ++     +   +   P       +                    L H +    
Sbjct: 778 LGRPGPFSFDVVDRDAATVARGPRHPRPPLLTAPLPPLDDPVVDLDDLVAALEHPV-RAF 836

Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
           +++R+    P     +   +       +     D +   +   +
Sbjct: 837 VRRRLGVLVPGEVDDLDDRLPLTLAPLDGWAAGDRLLAAVLDGV 880


>gi|171912708|ref|ZP_02928178.1| UvrD/REP helicase [Verrucomicrobium spinosum DSM 4136]
          Length = 672

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 74/723 (10%), Positives = 177/723 (24%), Gaps = 107/723 (14%)

Query: 10  TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG 69
           T             +     L     Y   N +   ++ +   T +A +E+      +  
Sbjct: 31  TAPAGQSLVIAGAGSGKTRVLTYRVAYLLDNGIAPENILLVTFTNKASREMLDRVQNLLP 90

Query: 70  KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129
            ++  L    +   +              L    S + R              +      
Sbjct: 91  IETNRLWG-GTFHSIGNRLLRKHG-DRLGLRQGFSIMDR-----EDQKDLMETVVTSSGV 143

Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
                    P        LA N +  I                  +    ++    + ++
Sbjct: 144 DTTTYRFPKPEVLGEIFSLADNTSTSIAQ--------------VVKGKYPYFERVVEGIE 189

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP-----IIIAGSTGSIPATAR 244
              + +T + +E N           +R   E+     +       I++     +    + 
Sbjct: 190 KLRELYTAKKLETNNVDFDDLLTMTLRLFRENEDLLDRYRRTFRFILVDEYQDTNLLQSE 249

Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
           L+  +A      +V+   D       W     K+             PQ      +  ++
Sbjct: 250 LIELLAGPEGNLMVV--GDDAQSIYSWRGANLKNILEF---------PQRYPKARVYKIE 298

Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
           +             E+   +    +         +    + +  +P         AL+  
Sbjct: 299 VNYR-------SVPEVLHLANRAIEVNQGQFRKALMPARVGKEVLP---------ALVPL 342

Query: 365 DNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
           DN   +A  +A  +    DE     + A+I      +  +++ELT  GI   I++G+   
Sbjct: 343 DNASAQASFVAQRILELRDEGMEFNEMAVIYRAHYHSLEIQMELTNRGIPFQITSGLRFF 402

Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
              H   + + +       D ++   LV                          R     
Sbjct: 403 EQAHVKDVAAFMKFAVNRQDEVSFMRLV--------------------------RLIPGV 436

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                 K       +                 +                T     ++   
Sbjct: 437 GTASAGKMWAHWLQSAAVAGPVTQSVFGECLRKLPAPKKAAKIWEQTAFTLEELLESEGE 496

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
               +  I    +              +       +++ + LS+  ++  +         
Sbjct: 497 PVAPSAMIRSVMEGVYEDYMR-----TKFKNADQRKQDLEQLSNYSTRFKDVS-----EF 546

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
           +  + +++ +   E        S  + +    +++ L +  +              A+  
Sbjct: 547 LSQLALVSGVDTDEQPNANNRDSEAVTLTTAHQAKGLEWQAVFAV---------WLAEGM 597

Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS-----LRENNIPTIASRWLQ 717
           F +  +  +      E+           A     L  T        R+  +    SR+LQ
Sbjct: 598 FPNNRVIEESGEVGLEEERRLFYVTVTRAK--DELYLTYPVINYQARDGEVLQRPSRFLQ 655

Query: 718 RLL 720
            L 
Sbjct: 656 ELP 658


>gi|147677999|ref|YP_001212214.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum
            thermopropionicum SI]
 gi|251764536|sp|A5D1P3|ADDA_PELTS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|146274096|dbj|BAF59845.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum
            thermopropionicum SI]
          Length = 1269

 Score = 65.3 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 100/922 (10%), Positives = 209/922 (22%), Gaps = 147/922 (15%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVG 209
            D+   +       ++L  L  E    +    A            Y  + L E   S    
Sbjct: 341  DLCADLRRMAPLIKELAGLVREFDATYRKAKAARGVVDFNDLEHYCLQVLAEKGPSG--- 397

Query: 210  YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-VLPGLDCHIPT 268
                 + ++  H ++     +++            ++  V+    G   +    D     
Sbjct: 398  ----AVPSQVAHELQEKFVEVLVDEYQDINAVQETILQMVSRKGEGQSNLFMVGDVKQSI 453

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF-------------------------- 302
              +            ++ +  T         L                            
Sbjct: 454  YRFRLAEPGLFLKKYASFSAGTGGGQGRRLALTANFRSRQGVVSAVNFIFKQIMTPAVGE 513

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            +    + +   G     +        ++                   P  ++    V  +
Sbjct: 514  MAYGSDAMLVYGADYPPVPEGQGNYEEAVELHLVERGPAGKDGGGDDPAGEEADGGVEAV 573

Query: 363  EADNE-----REEAISIAIALRMSL----------------------DENKKKSALITAD 395
            E   E     ++EA  +A  ++  L                         +  + L+ A 
Sbjct: 574  EEIEEELEAGQKEARLVARRIKELLGGSPGGEHALEIYDRELKKYRPLTYRDVAVLLRAT 633

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
               A     E  R GI            +     + SLL  I      + +A +++ P  
Sbjct: 634  AGYANSFVEEFRREGIPAYAELSTGYFESTEVETVISLLKVIDNPRQDIPLAGVLRSPAV 693

Query: 456  KFGFPEKYLSRAKNALELVALR---------GNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                 +    R  +                 G  +      LK L   R   ++      
Sbjct: 694  GLKAGDLARIRLASPRGDFYDAVVAASLAGQGELSERLADFLKKLEEWRTIARQGTLADL 753

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
             W         +    L     +       +   +                +  L+    
Sbjct: 754  IWAVYRDTGYYDFTGCLPGGGQRQANLRALHDRARQFETTAFRGLFLFLRFIERLREGGR 813

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIE------TGSCIKANAIEWIDI--------ITRL 612
            D          E   + +S   SK +E       G     N               +   
Sbjct: 814  DFGAARLLSEKENVVRIMSIHKSKGLEFPVVFVAGLGRNFNFRNLNKAVLFHKDLGLGPQ 873

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL--------------------GGLNEG 652
            +     +     ++ L +   L+   L  +  IL                     G    
Sbjct: 874  LVDAEARVTRPTAAKLALKHRLKMEALAEEMRILYVAMTRAQEKLILVGSARNLPGCARR 933

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
                       L     +             A H    A     L          +    
Sbjct: 934  WCGPAGTAGWALPDGFLAGAGTCLDWLMAALARHRDGAAIR--ELAACAEEPPAEVAADR 991

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-----HYKRPKPFPPLEAQP 767
            SRW        G       +      +     L+             +   P   +  +P
Sbjct: 992  SRWRVFFSDSRGRSAEMAEEPVLLAKVRRMEPLEPAGPLAGMIKARLEWSYPAIAVLGRP 1051

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFK----------KDPDRTDRGTLFHNIIT 817
               + +E+K+  +   A   +                      +     + G   H ++ 
Sbjct: 1052 AKAAVTELKRRFDQLAAGEEQYGEGHFESFRLTAGRPLFMQEKRGLTAAEAGEALHLVMQ 1111

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
             L        T  +   ++ ++            +         KI+  F     +   +
Sbjct: 1112 HLDLTGSLDIT-AVRSQIEDMVWRELLTPEQAAAVPA------EKIAAFFAGPLGRRLLA 1164

Query: 878  IEKIFVNIPAKMAI------------ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP- 924
              ++   +P  MA+                + + G  D +     G   + DYKTG  P 
Sbjct: 1165 GFQVLRELPFTMAVQAAEIYPELVPYPGEAVLVQGVIDCLVDEGDG-YLLLDYKTGKRPL 1223

Query: 925  -KKETAQKLIDPQLSLEAAALK 945
             + E A +    QL++ A A++
Sbjct: 1224 GRPEEAARRYCGQLNIYARAVE 1245


>gi|312139063|ref|YP_004006399.1| exodeoxyribonuclease v beta subunit recb [Rhodococcus equi 103S]
 gi|311888402|emb|CBH47714.1| exodeoxyribonuclease V beta subunit RecB [Rhodococcus equi 103S]
          Length = 1103

 Score = 65.3 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 100/1008 (9%), Positives = 230/1008 (22%), Gaps = 97/1008 (9%)

Query: 43   LLASVTIYVPTKRAIQELRSE-----------FIEITGKKSTILPIIKSLGDVVEEKFTA 91
             L+ + +   ++ A +ELR               +    +++  P++  L D  + +   
Sbjct: 51   DLSQLLLVTFSRAATKELRERTRERFASAAAGLADPIAARASEDPLVAHLADTDDAEIAL 110

Query: 92   D------LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                    L  ++    V+       +   + I   + PD +     E  ++  I+    
Sbjct: 111  RRRRLMQALSDFDAGTIVTTHSFCQRMLDGLGIAGERDPDAVLVEEAEDLVAEVIADLFL 170

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHA----LKNEKYGM-WWLLAADFLKIASKYWTERLV 200
               A+  +  +   +        +      L  E         A  F     +    R  
Sbjct: 171  HRFARADSRTLRPADARAAARAAIFDPQSVLAPEDAEGTRAGDAVAFATAVRQETQRRKR 230

Query: 201  ELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
                         L            A   ++     +++     + P    ++      
Sbjct: 231  LSGIRDFDDLPALLHGVLTDPEHGEAACRRVRDRYRVVLVDEFQDTDPQQWGILRAA--F 288

Query: 253  PNGAIVLPGLDCHIPTAIWNTI------TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
               + ++   D       +             +  +    T +      L   L  L   
Sbjct: 289  HGHSTLVLVGDPKQAIYAFRGAEVLSYLDAVGSAHSHQELTTNWRSDADLVAALGHLHGG 348

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                 R   V      + +       P     +                 +  + + AD 
Sbjct: 349  AALGHRDIVVHPVSAAKQVSRLHGAAPLRLRYLSRAGAGRLNNSGYPAVGALRSRVAADV 408

Query: 367  EREEAISIAIALRMSLDENKKKS-----ALITADRNLARRVKLELTRFGINIDISAGIPL 421
              +    +     + L+   +       A++         V+  L R G+   ++ G  +
Sbjct: 409  AADIVELLGSGATLELNGVTRPVEPGDVAILAGTNAQIALVREALDRVGVPSVLAGGTSV 468

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-RAKNALELVALRGNK 480
              T  ++    +L A+ + +    +      PL  +   +         A     LR   
Sbjct: 469  FETPAATHWLQVLQALEQPHRPDRVRLAALTPLIGWTAADVDARSDEVVARVGGQLRELA 528

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
              +      +L     A       +       R   + + +  LL    +     L    
Sbjct: 529  TVFAQSGFAALFERLAAESGLEARLLTVAAGERTLTDLRHIGQLLGAVAVDESLGLTALT 588

Query: 539  TNKNST---------CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                             +  +            +        +  + F       +    
Sbjct: 589  GWLTDRIKDPKSGGGDRSRRLDSDAAAVQIATVHASKGLEYPIVYVPFGWSTGRYADPNR 648

Query: 590  KIIETGSCIKAN--AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
             ++      +      E              +   E    L++  T     L        
Sbjct: 649  LLLHDEHGRRILDIGGEGSPGYGDRRRQRDAEAAGEDLRLLYVALTRAQCQLVLWWAPAY 708

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
              NE    +           +   + +        Q       A      +  +++    
Sbjct: 709  STNEAPLHRMLFGREPGEADVPQKVGVPEDPMVAEQLTR---WAEAAPVTVEVQAVGAGP 765

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
            IP  +    Q          F  +   G     +T       + P        P +E +P
Sbjct: 766  IPQPSWTPPQEETGELAAAVFARVLDAGWRRTSYTALTASAHEHPGVTSEAEEPEIEDEP 825

Query: 768  RTYSFSEIKQLINDP-----YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
               +       +  P         A     +  I              L  +    +  +
Sbjct: 826  EEPALIAAAPALGIPSTMNDMPYGAVFGTLVHEILEHVDTAAADLEAELVRHCREAVAAR 885

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR----------------HLFHKISHS 866
                +   +   +  ++ +          I    R                 +     H 
Sbjct: 886  MSQVDPVALADALLPVLRTPLAGGGTLADITPRDRLPELDFELPLAGGDDPAVLTVTLHR 945

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYKTGDNP 924
             ++       + + +         +E   +   LTG  D +  L+     I DYKT    
Sbjct: 946  IVDLLRNHLPADDVLAPYADRLATLEPTPLRGYLTGSIDAVLRLEGPRFVIVDYKTNRIA 1005

Query: 925  K--------------KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
                            E  +     Q  L A AL      ++     A
Sbjct: 1006 PGEVTTADFTRESMAGEMMRSHYPLQALLYAVALHRYLRWRLPGYDPA 1053


>gi|88797062|ref|ZP_01112652.1| exodeoxyribonuclease V, beta subunit [Reinekea sp. MED297]
 gi|88779931|gb|EAR11116.1| exodeoxyribonuclease V, beta subunit [Reinekea sp. MED297]
          Length = 1130

 Score = 65.3 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 90/920 (9%), Positives = 220/920 (23%), Gaps = 109/920 (11%)

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET----EEKKWE---- 167
            +     +  D   D             A  I L  +L + +D        +    +    
Sbjct: 209  LDSLLAEHIDSWSDERETFLKLNKPRKAEVIALRDSLIEALDRAAEGQPLQALDPDVESK 268

Query: 168  ---------------DLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
                            L  L    +      LA D ++   +         +        
Sbjct: 269  FFNTKAKQAGLSVCRRLVHLTLTNEKARKLNLALDGVRFIREQLNASKARQDQLDFNDLI 328

Query: 212  IALMRAEAEHLMKGTKGPI-------IIAGSTGSIPATARLMSTV-ANHPNGAIVLPGLD 263
            I L RA         +  +       ++     + P   ++++ +         +    D
Sbjct: 329  IQLRRALDGPHAVELQKALLDQFPAALVDEFQDTDPDQYQILNRIYHRQHGPHFLCMIGD 388

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR--LGNVSNEMY 321
                   +      +        T     Q+++           +   R  L + +    
Sbjct: 389  PKQAIYAFRGGDVFAYLSAREQATQ----QWTMDTNYRSSPSVIDGYNRTFLQSDAPVNP 444

Query: 322  GRSMVISKSFLPPDTSDM----RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
                   +        D      + D    +  ++      V  ++ + ++  A      
Sbjct: 445  EAFGFGIEYHRILAADDRKDPIFSDDRSGVQWVHLSPADESVNTVKKEFQQSIADWCVQE 504

Query: 378  LRMSLDENKK--------KSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSS 428
            +   L++  K          AL+      A+ ++  L R  +  + +SA   +  T  + 
Sbjct: 505  IAHLLNDVTKDERSITAGDIALLVRSYGEAQLLQDTLRRANLPSVYLSARQNVFQTSEAR 564

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
             L  LLN I++ ++       +          E    +    L            +    
Sbjct: 565  DLYQLLNGIWQADNDRLFLAALAGSWIGLNLIELDQLQHDERLWAQWQTRFVQWREDWTQ 624

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
            + L+   +   +++                      D   + +T  +             
Sbjct: 625  RGLMSVLLEILQSHHRPQR-----------------DATERSLTNRLHLAERLQLESNQH 667

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             + D          +    E      L  ++    + ++          +      +   
Sbjct: 668  RLPDALLHWFARALDEDTGEEDNQLRLESDDALIKIITMHGAKGLEYPIVFIPFASYYSA 727

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF----- 663
              +         +   +S    L   E + L  +      +           +       
Sbjct: 728  SRQSPAFYHFHDRETFASQWVYLSNDEQKQLTQEEDEAERIRLLYVAMTRPIDRLYCCLA 787

Query: 664  -LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
              +   QS L L   +     +    ++ +G    + + + R+    T+ +         
Sbjct: 788  PFTGFAQSPLGLTLKQASFELSDISAKVCSGQAATLMSVNERDIQTVTMTTP---ESPDT 844

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
                 F    +R      ++    +              P   +      +E    +   
Sbjct: 845  SIAAEFHGHIERDWWLSSFSALTRH------VGHSSHSTPDRDELDGLGSTETSTELR-- 896

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGT-LFHNIITELIKKRINKNTPEINHLMKQIIDS 841
                 R     +         +  D     +  ++ +  K+         +   +Q ID 
Sbjct: 897  ----FRLAKGAEAGNLLHDTLEHCDFTNPDYPTLLEQARKRYSILAKSFTDDEFRQWIDE 952

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL--- 898
                      +  + +    + +  +   E+     +  I      +         L   
Sbjct: 953  LLHAPIDGFRLCDLPKQKTLREAEFYFPMEDTPIDKLSAIIAQRRGETFQLPDRHRLKGM 1012

Query: 899  -TGFADRIDLLKSGFVDITDYKT---G------DNPKKET--AQKLIDPQLSLEAAALKA 946
              GF D I   + G   + DYK+   G        P           D Q ++ A AL  
Sbjct: 1013 MHGFIDLIFEWQ-GRYYVADYKSTHLGHQLTHYQPPSIRHSILSSHYDVQYAIYAVALHR 1071

Query: 947  ---GSFSQIDCRKVANLFYI 963
               G     + ++     Y 
Sbjct: 1072 YLAGRVPGYNPKQHFGGVYY 1091


>gi|187926312|ref|YP_001892657.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|241665800|ref|YP_002984159.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|187728066|gb|ACD29230.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|240867827|gb|ACS65487.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 716

 Score = 65.3 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 63/541 (11%), Positives = 140/541 (25%), Gaps = 55/541 (10%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TL     +   N      + +   ++RA  EL +    +  +           G+    
Sbjct: 58  HTLGWRVAHLVANGADPQRILLLTFSRRAASELSNRAGHLLARAMQ--------GERSNN 109

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK--LPDIIKDLYPESPLSLPISPANA 145
              +         P           ARL+  +  +  L              L     + 
Sbjct: 110 ALNSAGTSYKTTLPWAGTFH--GIGARLLREYAERVGLAPDFTIHDRSDSADLLNVVRHE 167

Query: 146 IWLAKN-----LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
           + L+       L      I +     E       + +  W  +    L+     + E   
Sbjct: 168 LNLSTKERRFPLKQTCIAIYSRAINAESPLNAVLKHHFPWCAMWETQLRTLFDAYVEAKQ 227

Query: 201 ELNASSP----VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             +        + +   +  AE    +      I++     +    + ++  +   P+G 
Sbjct: 228 AQHVLDYDDLLLYWHAMVSDAELAAEIGARFDHILVDEYQDTNRLQSSILRAL--RPDGR 285

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V    D       +   T ++      + +   H           L+      + + + 
Sbjct: 286 GVTVVGDDAQSIYAFRAATVRNILDFPRHFSRPAHT--------VLLERNYRSTQPILDA 337

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           SN   G     ++ F     +D  +T                  LI   +E E+A  +A 
Sbjct: 338 SN---GVMRFATERFAKTLWTDRASTHRPR--------------LISVRDEAEQARCVAE 380

Query: 377 ALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +    +     K  A++    + +  +++ELTR  I      G+      H   + S+L
Sbjct: 381 QVLHHREGGLTLKSQAVLFRTASHSAPLEIELTRRNIPFVKYGGLKFLEAAHVKDVLSVL 440

Query: 435 NAIFKLNDFMAIATLVK-----HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
                  + +A   +++      P       +     A     L+A              
Sbjct: 441 RWAENPRNRIAGFRVIQLLPGAGPATAARVLDAMAEAADPIAALLAYEPPARLAGDWSTL 500

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
             ++  +   K++         +          L D        L        +      
Sbjct: 501 MALMQTLRVPKDSLEWAGELEAVGAWYSPHMERLHDDAAVRQGDLDQLARMAATYATRER 560

Query: 550 I 550
            
Sbjct: 561 F 561


>gi|46578573|ref|YP_009381.1| ATP-dependent DNA helicase UvrD [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46447984|gb|AAS94640.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311232497|gb|ADP85351.1| UvrD/REP helicase [Desulfovibrio vulgaris RCH1]
          Length = 719

 Score = 65.3 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 72/747 (9%), Positives = 181/747 (24%), Gaps = 140/747 (18%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +S+ +   T++A  E+      + G        ++ +       F   LL  Y+      
Sbjct: 52  SSILLLTFTRKAANEMLQRASRLLGYG------VQGIAGGTFHAFAYSLLRQYHPARLEG 105

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
              R L +                        S P +        + +  ++     +E 
Sbjct: 106 ---RDLTIMDGADSVAAIQHCKDALGIARGDKSFPKT--------QTVLSLLSKSRNKEL 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             +++   +     +     AD +    + + E   E            + R   E    
Sbjct: 155 PLDEVLRREAYHLLVH----ADGVSRIGEAYAEYRAEHGLLDYDDLLFEVERLLRERPDL 210

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +    ARL+  +A    G  V+   D       +     ++ 
Sbjct: 211 LAHLRDRYRYIMVDEYQDTNLVQARLVQLLAG--EGGNVMAVGDDAQSIYAFRGANVQNI 268

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                       PQ+     +  L+      + + +++N +   +    +  L     D 
Sbjct: 269 LSF---------PQFFPGTRIIKLEENYRSTQPVLDLTNAILAEAPQAYRKHLYTSREDG 319

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNL 398
               ++                    ++  +A  +   +   L      + A++      
Sbjct: 320 VLPQVVRPL-----------------SDLTQASIVVSRVSELLRTYPPHEIAVLFRAGFH 362

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +  V+++L + GI      G+  S   H   + +    +    D  A   +         
Sbjct: 363 SYHVEVQLNKLGIRFRKYGGVRYSEAAHVKDVMAYARLVLNPLDLPAFQRVA-------- 414

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                                ++                + D  
Sbjct: 415 ------------------------------------ALSRGVGPKTTLRLYEVARQGDPA 438

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                     Q    L      +  T    ++ +               +         E
Sbjct: 439 ATAHACARYPQLRADLELLDRLRKRTPAPATLLEEVIEHYQPRLEAAYPDDWPRRQQGLE 498

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           +  +  S+                   +D+    +  E    + E   ++ +     ++ 
Sbjct: 499 QLVQIASAYRD----------------LDLFISDLSLEDPGTEEEDRDSVVLSTIHSAKG 542

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L +  +I+  L E                  S   +  A+ +  +    +      R  +
Sbjct: 543 LEWSAVIILDLVE--------------DRFPSRHAVTRADDFEEERRLMYVACTRARERL 588

Query: 699 -------YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
                    +     N P   S +++ L      + +      G    D +R +      
Sbjct: 589 MLFVPSSLYQRGEGGNQPAAPSPFVRELPAAL-YEEWYESYTGGLQRRDTSRPVARPAVA 647

Query: 752 P---HYKRPKPFPPLEAQPRTYSFSEI 775
                  RP+  P           +++
Sbjct: 648 STFGCAPRPESAPVPGGPSPVAGAAKL 674


>gi|258510489|ref|YP_003183923.1| hypothetical protein Aaci_0476 [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
 gi|257477215|gb|ACV57534.1| hypothetical protein Aaci_0476 [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
          Length = 309

 Score = 65.3 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 72/244 (29%), Gaps = 22/244 (9%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             + S I      P   +   + +L               G+ +H  +     +R   +  
Sbjct: 4    LTHSRIAMRQVCPQKEHYHYVERLRPREVAW----ALSVGSAWHKGLEVW--QRGEADED 57

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
                     +D    + +   +   + R     +    + H          + V    ++
Sbjct: 58   GAVAAGLATLDWIRPENDEEAYKLQLERIRTEVMIRFAIRHFRPRNL----VAVEREFQL 113

Query: 890  AI-------ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
             I       +S    L G  D +   + G + I + KT  + ++      +  QL+L   
Sbjct: 114  PIVNPATGRKSRKYLLGGKIDGVCEDEQGKLWILENKTTASIEQFKQSYGMSQQLTLYVY 173

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
            A        I  R +A      +++        N +   + ++  ++ +    E      
Sbjct: 174  AAAR-----IFDRPIAGAVVRSVQKSRMEPKHRNGEMVETWEDFRDRLMAEYEENPAKYL 228

Query: 1003 NGEQ 1006
            + ++
Sbjct: 229  SEDE 232


>gi|148259806|ref|YP_001233933.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
 gi|146401487|gb|ABQ30014.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
          Length = 639

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 84/682 (12%), Positives = 185/682 (27%), Gaps = 117/682 (17%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     I    +    +I +      +           + P    
Sbjct: 58  RILALTFTTKAGDEMRERVEAIVPGLAERT-VIGTFHSFCAQVLRQHG-SHLAIKPDFGI 115

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +  + A L+     +                 ++  +  WL       ID + +    
Sbjct: 116 YDQDEDRAELLKDALEQAASH----------GAAVTADDTRWL-----RAIDQLRSSLVS 160

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP------VGYQIALMRAEA 219
            +       +                 + +   L E N                 + A A
Sbjct: 161 PQKAAKHFRDPKAGERAA------RVYEIYENALRERNIMDFNGMILDTCRLAHQVPAVA 214

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
             + +     + +     + PA  RL+  +A      + +   D       W   + +  
Sbjct: 215 ARIRQSYPYWL-LDEFQDTTPAQYRLIRFLAGDKFKNVFV-VADDDQIIYQWAGASYRQI 272

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                   +  H    + +L++      E V+   N+      R                
Sbjct: 273 A------AFREHFAPDIIQLVENRRCPPEIVQAANNLIAHNAER---------------- 310

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
             T   +  +P      + +       E EEA +IA  +    +    ++A++   R + 
Sbjct: 311 --TPGKQPLVPTRPSDGAAIIDRAFATETEEAQAIAQEIAAKGEAVWGRTAVLGRTRAIL 368

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           + V  EL + G+   I+       +     L S L+   +  D  A  T           
Sbjct: 369 QPVLDELRKLGVAASIATRRDRFVSPQFVWLQSCLDLSLRPTDRRAFTT----------- 417

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                           +    N    ++L   +L   A   + + + +W    +    ++
Sbjct: 418 ----------------MAAAANRITGIELDVAILAAEARSSDASLLEYWALAANNAGNDI 461

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
           A  L +                 +     S S W K+    +  +          +   E
Sbjct: 462 ASSLAE----------------FALRLVQSRSTWRKVVSEAIAWLPQTADSSNGIISDAE 505

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS--TLFILGTLESR 637
           E +T     ++ I      + +       +  L+ G  ++PK        + +L    ++
Sbjct: 506 EDRTAWETAAQAIRVEKGSQPD-------LDELLQGIALRPKEPPLDPSAVRLLTIHAAK 558

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F+ + + G+ E            L            AE    +      +    + L
Sbjct: 559 GLEFEYVWVTGVAEQ----------ILPSWQSLKAGASPAELEEERRNFFVAVTRTQKQL 608

Query: 698 IYTRSLRENNIPTIASRWLQRL 719
           + T + +        SR+L  +
Sbjct: 609 VLTHAAQYRGWQRQPSRFLAEM 630


>gi|70733445|ref|YP_263220.1| DNA-dependent helicase II [Pseudomonas fluorescens Pf-5]
 gi|68347744|gb|AAY95350.1| DNA helicase II [Pseudomonas fluorescens Pf-5]
          Length = 727

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 60/687 (8%), Positives = 153/687 (22%), Gaps = 149/687 (21%)

Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
           +L+ R      +++  P S LS+  +   A  +   +  ++  I          H L + 
Sbjct: 40  VLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRHRIEQLLG-INPAGMWVGTFHGLAHR 98

Query: 176 KYGMWWL---------------------LAADFLKIASKYWTERLVE------------- 201
                W                           L +  + W  R  +             
Sbjct: 99  LLRAHWQEAGLSQTFQILDSDDQQRLVKRVIRELGLDEQRWPARQAQWFINGQKDEGLRP 158

Query: 202 ---------------------------LNASSPVGYQIALMRAEAEHLMKG-----TKGP 229
                                                +  +    +H             
Sbjct: 159 QHIQASGDLFLATMRGIYEAYEAACQRAGVIDFSELLLRALDLWRDHPGLLAHYQKRFRH 218

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
           +++     +       +  +A   +  +V+   D       W     ++ +  S++   +
Sbjct: 219 VLVDEFQDTNAVQYAWLRLLAQGGDSLMVV--GDDDQSIYGWRGAKIENIHQYSADFPDT 276

Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                                         +       +      +     NT  L  ++
Sbjct: 277 E--------------------------VIRLEQNYRSTAGILKAANALIANNTGRLGKEL 310

Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELT 407
                    + L  A NE +EA  +   +  +L     +   A++      +R ++  L 
Sbjct: 311 WTDGGDGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNAQSRVLEEALL 370

Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SR 466
           R  I   I  G             + L  +    +  A+  ++  P    G         
Sbjct: 371 RERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGIGEKTVEAIRE 430

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                ++      +       L       +                              
Sbjct: 431 HARHSDVSMWEAMRQLVANKGLTGRAAGALGA---------------------------- 462

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
               I  +            +L      + +     +      +    +   EE  + + 
Sbjct: 463 ---FIELIENLAAKTLEMPLHLMTQTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAAR 519

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            F    E       +       +             E   ++ ++    ++ L F  + L
Sbjct: 520 NFENTEEDE-----DLTPLAAFLGHASLEAGDTQADEHEDSVQLMTLHSAKGLEFPYVFL 574

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE 705
            G+ EG++P                ++L+   +   +    +         L+ T +   
Sbjct: 575 VGMEEGLFP--------------HKMSLEEPGRLEEERRLAYVGITRAMQNLVMTYAETR 620

Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLK 732
               +     + R +          ++
Sbjct: 621 RLYGSETYNKVSRFVREVPKGLIQEVR 647


>gi|300871264|ref|YP_003786137.1| ATP-dependent nuclease subunit B-like protein [Brachyspira
           pilosicoli 95/1000]
 gi|300688965|gb|ADK31636.1| ATP-dependent nuclease subunit B-like protein [Brachyspira
           pilosicoli 95/1000]
          Length = 984

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 22/173 (12%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-- 826
             S S +  ++  P  V      K++ +       D+  +G+++H+I     K   NK  
Sbjct: 678 GISVSYLLNIMQCPAKVLYNDECKIEAVSSAPVGIDKILKGSIYHDIFHYFYKNIKNKYG 737

Query: 827 -------NTPEINHLMKQIIDSHF--EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS- 876
                       +++ K++I+      KE    +   I  +  + I   F+ +E +    
Sbjct: 738 DLKLKTSEFDNYSNIAKEVIEDTLIKHKEITDDNDKKIMTYEINNIMKHFISNEIENIEE 797

Query: 877 -SIEKIFVNIPAK-MAI---ESIGIHLTGFADRIDLL--KS---GFVDITDYK 919
                         + +     + + + G  DRIDL          + I DYK
Sbjct: 798 YGFIPFEFEKSFSYVKVYSYNGLDVKIKGRIDRIDLSYNDDKTINGIRIIDYK 850


>gi|310640547|ref|YP_003945305.1| protein [Paenibacillus polymyxa SC2]
 gi|309245497|gb|ADO55064.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 305

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 77/305 (25%), Gaps = 63/305 (20%)

Query: 768  RTYSFSEIKQLINDPYAVYARRIL---KLDFIPHFKKDPD----------RTDRGTLFHN 814
             +YS S  +         Y          +     ++                 G + H 
Sbjct: 7    WSYSQSRAQTFDECLRKYYYHYYGSHNGWNSAQGTEEQVTLYRLKQLSNLYILFGNITHQ 66

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR----------------- 857
            +   +I+  + K        ++  + +             +W                  
Sbjct: 67   MCESVIRGWMEKGAVPRTAFLETAMKNMLNDSYKESLHRELWLQDPKNRVMLAEIYYDDE 126

Query: 858  ---HLFHKISHSFLE----------HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                   +I                  E  Q     + V     M +    +++    D 
Sbjct: 127  VLPERIARIKERQHAVVHNLYRTAVWRELQQGQARIVEVEKWDTMLLHETKVYV--KMDL 184

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964
            +    +G + I D+KTG        +     QL L A+ ++      ++  +V  + Y+ 
Sbjct: 185  LYRRDNGDMVIVDWKTGK-------EGDFSDQLFLYASYVQEHYQLPLEKIEV-RVEYLM 236

Query: 965  LKQKFKIDCITNDKKKY--SADELSEKSLKNLIEIVTLLQNGEQP---FISHLRLSEKSN 1019
              +         D +K   +     E+    L +      N  +P   F      S +  
Sbjct: 237  TGEHEVYRPTPEDIEKVVGNVGRYIEEMKSCLDD---DYYNRPKPESFFT--PMPSRRVC 291

Query: 1020 IQSEY 1024
                +
Sbjct: 292  GGCNF 296


>gi|294635655|ref|ZP_06714129.1| helicase IV [Edwardsiella tarda ATCC 23685]
 gi|291090985|gb|EFE23546.1| helicase IV [Edwardsiella tarda ATCC 23685]
          Length = 694

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 66/254 (25%), Gaps = 13/254 (5%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             + +    +RA QE+        G  S      K+   +  +           L+   S
Sbjct: 252 PQILLLAFGRRAAQEMAQRLPACPGGDSV---AAKTFHALALQIVEQAGRKPVRLSRLES 308

Query: 105 N--IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--------LAKNLAD 154
           +   +    LA        K           + L        A W        LA  LA 
Sbjct: 309 DRQARHDFLLAEWCQQCATKKSQAKGWRQWLASLFDETPLEEAFWQDKALQARLAPRLAY 368

Query: 155 IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            + ++  +      + AL  E   + +      L    K W   L    A         +
Sbjct: 369 WVGLLREQGASQAAMTALAPEALRVPFQQQLRLLAPLLKAWKAELKREAALDFPALIQQV 428

Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           +    +         I++       P  ARL++ +    + + +    D       ++  
Sbjct: 429 LALLEKGRFISPWKHILVDEFQDISPQRARLLAALRRQNSHSALFAVGDDWQAIYRFSGA 488

Query: 275 TEKSTNITSSNTTY 288
               T     +   
Sbjct: 489 ALTLTTAFHHHFGD 502


>gi|332704300|ref|ZP_08424388.1| UvrD/REP helicase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554449|gb|EGJ51493.1| UvrD/REP helicase [Desulfovibrio africanus str. Walvis Bay]
          Length = 1073

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 71/728 (9%), Positives = 159/728 (21%), Gaps = 101/728 (13%)

Query: 228  GPIIIAGSTGSIPATARLMSTVANHP--NGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
              +++     +     R +  +A      G  +L   D       W     +      S+
Sbjct: 372  RHLLMDEFQDTSRDQWRAVLPLAQECLSRGGSLLYVGDVKQAIYGWRGGEARLFEEVGSD 431

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKR------LGNVSNEMYGRSMVISKSFLPPDTSDM 339
                        +L+     +R+ V+       L   S+     + V+     P D   +
Sbjct: 432  VALMAIAGLEQEELVYNWRSRRQVVEFNNAFFGLLESSDNARAVAEVLLPDSAPEDAKAL 491

Query: 340  RNTDILE---------NKIPNIQKCFSDVALIEADNERE---EAISIAIALRMSLDENKK 387
               D+               +       V  + A +  E   E   +  +L   L E  +
Sbjct: 492  LAEDLWRSFAMCRQQVPAKNHDATGLVRVRTVAASSTDELETETHGLLTSLIEDLRERGR 551

Query: 388  KSA---LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
              A   ++      A  V   L   G  +     + L++      L + L  +    D +
Sbjct: 552  DWAEIAILVRSNAQAALVAGWLLEEGTPVITENSLELASHPLVRQLVAFLAFLDYPLDGL 611

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
            A    ++                   L L A   ++  +                + +  
Sbjct: 612  AFWQCLQG----------------EELFLDACGRSRQEFADWLAGQDTSSVAWRFRRDFP 655

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                        +   +   D +++ +      +             +            
Sbjct: 656  DLWEAWFAPFLSRAGLMSPYDLVMRALDIFGVLRRRPEDEPFAQRFLEVLHRAEER---- 711

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                       ++  +G        + ++    +  +  + ++    ++      P    
Sbjct: 712  -GFRSLSTFLDFWRRKGGEERLPMPEHVDAVRILTIHKSKGLEFPVAIVP-FHHWPAGPD 769

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKN---TAKNPFLSRVMQSDLNLKTAEKYI 681
             S   +        L        G               N       ++   L       
Sbjct: 770  HSLAQVGDPAAGASLLVPMRKELGPQYWQRQCQGLLEQVNLLYVAWTRASEELHAFVPPE 829

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
            G        A                   +      R             ++  Q  +  
Sbjct: 830  GLTRATLVTAL-----------------DLMLGLAGRSEEDALMQVGQPPRRMRQEEVAP 872

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
              KL           P     L                                    + 
Sbjct: 873  LAKLHSAQAAQAETTPANTETLVRWLPRLKVYRHFSA-------------------DTQY 913

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
               +++RG +FH  +  L+   +  +       M+  +        L   +         
Sbjct: 914  GFTQSERGNVFHAALEYLV--WLGADGDICGEAMESAVAKALSLYPLSKDLREQAADELR 971

Query: 862  KISHSFL----EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917
            +    FL              E   +N   K+            AD +  L    + + D
Sbjct: 972  QGLGWFLGLPQAAHWLRNGRPETSLLNEDGKVL----------RADLLVEL-DNELHVID 1020

Query: 918  YKTGDNPK 925
            +KTG    
Sbjct: 1021 FKTGMPAS 1028


>gi|288921385|ref|ZP_06415665.1| hypothetical protein FrEUN1fDRAFT_5363 [Frankia sp. EUN1f]
 gi|288347237|gb|EFC81534.1| hypothetical protein FrEUN1fDRAFT_5363 [Frankia sp. EUN1f]
          Length = 273

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 46/170 (27%), Gaps = 10/170 (5%)

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
           +  +  + + S +    + P       + +                G   HN +      
Sbjct: 6   MPRRLFSCTPSRLAAFEDCPRRYRMTYLDRPAPPKGPPWAHT--SVGVSVHNALHRWWDV 63

Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
            +   TPE    + +                  WR     +   +      +  + E   
Sbjct: 64  PLPARTPERAGGLLRTAW--VTDGFRDREQSAAWRERAAAMVEGYTA---GLDPAAEPRA 118

Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
           V        E +     G  DR+D    G + + DYKTG  P  E   + 
Sbjct: 119 VERQVATRTEQLAF--HGRVDRLDQR-DGELVVVDYKTGRRPLTEADARG 165


>gi|261884407|ref|ZP_06008446.1| hypothetical protein CfetvA_03920 [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 283

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 13/182 (7%)

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
             + + ++G LESR  N+D +I+   N+ + PK + K  FLS  ++    L + +     
Sbjct: 112 GGAEVTVMGVLESRSGNYDGVIIIDFNDDIVPKRSQKEMFLSSSVRKKAGLISHQDRENL 171

Query: 684 AAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
               +E      + +  +     ++  +I SR+ +         +  N          + 
Sbjct: 172 QRFYYESLINRAKKVSISY---LSDEESILSRFARDFSFKIDEKYTQN---------AYL 219

Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
             L  +  +   ++   +   +      SF  +   +      Y R IL L     F KD
Sbjct: 220 NSLKSSGIKLSLEKKDIYLRHDFFATELSFYRLNTYLGCKRKYYYRYILGLKEYRGFDKD 279

Query: 803 PD 804
             
Sbjct: 280 IS 281


>gi|325831374|ref|ZP_08164628.1| putative ATP-dependent helicase PcrA [Eggerthella sp. HGA1]
 gi|325486628|gb|EGC89076.1| putative ATP-dependent helicase PcrA [Eggerthella sp. HGA1]
          Length = 730

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 58/527 (11%), Positives = 116/527 (22%), Gaps = 92/527 (17%)

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
               I++            LM  +A +     V+   D       W     +        
Sbjct: 232 RLEYIMVDEFQDIDGLQHELMEVLAGYHKNLFVV--GDPDQTIYTWRGADVRYLLDFDKR 289

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
              +         +L+        V    ++  +   R     ++        +      
Sbjct: 290 FPGT-----RTVMMLENYRSAPRVVAVANSLIEKNRERVPKRLEAMRSVHGPTVWRH--- 341

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVK 403
                             A +  +EA  IA        E    +  A++      +R V+
Sbjct: 342 ------------------AKSPDDEAAWIAQGALALHGEGVAYRDMAVLYRAHYASRPVE 383

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
             L R  +   + +G+P           S L  +   +D            A+     K 
Sbjct: 384 EALLRAEVPHAVYSGVPFFGRREIKDALSYLRLVAYQDDLD---------FARVANAPKR 434

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
              A+    L              L+  V D +                        + L
Sbjct: 435 NLGARRMAFLREKADELGCSLFEALERFVDDDL---------------FKRTKARQLLQL 479

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
           VD                        +S+         ++      R   +    +    
Sbjct: 480 VDRFRSSYEG--------------RPVSEVLAAV--LSESGYERALRTEGSQERLDNLAE 523

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
           L     +   T    +     ++     L          +    + ++    ++ L F  
Sbjct: 524 LKQSVYEFETTCGE-EVTLEHYLAHTALL---TNADAMDDAQDKVRLMTVHAAKGLEFAH 579

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRS 702
           + L  + EGV P                    T +    +    F      R  L  T +
Sbjct: 580 VFLCSMTEGVLPSRKTD---------------TPQGMEEERRLAFVAMTRARDGLYLTEA 624

Query: 703 --LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                   P   SR+L  +            ++            D 
Sbjct: 625 EGRGHEGAPRYPSRFLLDIDPAALEFSNKPAERELDDARAAYALADR 671


>gi|152964961|ref|YP_001360745.1| exodeoxyribonuclease V, beta subunit [Kineococcus radiotolerans
            SRS30216]
 gi|151359478|gb|ABS02481.1| exodeoxyribonuclease V, beta subunit [Kineococcus radiotolerans
            SRS30216]
          Length = 1125

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 98/859 (11%), Positives = 199/859 (23%), Gaps = 110/859 (12%)

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT--- 275
            A   ++     +++     +      ++ T         ++   D       +       
Sbjct: 258  ACERLRRRYSVVLVDEFQDTDAVQWDVLRTA--FHGQGPLVLIGDPKQAIYAFRGADVRS 315

Query: 276  ----EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                      T++ +T        LA     L       +R+     +    +  +    
Sbjct: 316  YLDAAGVAGTTATLSTNHRSDPLVLAGTAALLRGAALGEQRIVVRPVDAAHAAAALVDGS 375

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--- 388
              PD + +R   +  + +P   +    V    A   R+ A  +   LR  L    +    
Sbjct: 376  GAPDPAPVRVRVLERDGLPTTGRGLPPVGEARAVVARDTAAQVVAVLREGLRVRPRDGGE 435

Query: 389  -------SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                    A++      A  V+ EL R G+   +S G  +  T  +    SLL A+ + +
Sbjct: 436  RDLEAGDVAVLVRTGAQAALVQEELRRRGVPCVLSRGPSVFATPAAQEWISLLEAVEQPH 495

Query: 442  DFMAIATLVKHPLAKFGFPEKYLS--RAKNALELVALRGNKN-SYDIMDLKSLVLDRIAT 498
                +  +           E   +  RA + L +         +   +     V+     
Sbjct: 496  RAPRVRRVALSSFVGRSAAELDAAGDRATDELSVQLREWGAVLTERGVAGAFAVVGEAHR 555

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                        R   + + +A +L           V+   +        +  D  +   
Sbjct: 556  LPGRLLGVEGGERRLTDLRHIAEVLHRESALNPGGGVSSLLSWLRARVEEAAGDADRERS 615

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC--IKANAIEWIDIITRLIDGE 616
              L            +     E + +   F      G     +       D    L  G 
Sbjct: 616  RRLDTDRAAVQIATVHTSKGLEFEVVCVPFGWDAPGGGGSKDRLPVAHAPDGPRALHVGG 675

Query: 617  TVKPKIEKSSTLFILGTLESRLL---------NFDTLILGGLNEGVWPKNTAKNPFLSRV 667
               P    +        L   L              L+    ++        +       
Sbjct: 676  PGAPGYAAACRAADTEDLGEELRLLYVAVTRAVSRLLVWWAPSQNTEEGALHRLLLAEDP 735

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
            +    +L      +  +        G    + T  LR       A       L +     
Sbjct: 736  LAVPESLPVPGDEVLSSRLASRFPAGGPVAVETVPLRTPEDRLPAVAAPAAHLAVARFRG 795

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
              +L  R   Y   TR +       H     P   +         +      +DP    A
Sbjct: 796  AVDLGWRRTSYSGLTRGVHDGPGAGHAVLAGPEVDVTDDEVDLDAAGATAADDDPRGWRA 855

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                    +      P  T  GTL H ++        +   P+    +  +    F+ + 
Sbjct: 856  T-------VSPMADLPAGTGFGTLVHAVLEGF-----DPAVPDRTAHLAALAREQFDPQP 903

Query: 848  LPPHIDIIW------------------RHLFHKISH---------------------SFL 868
                   +                     +  +++                         
Sbjct: 904  AEDLALALGPVLRTGLGPLAGGAALEGFPVADRLAELDFEMPLAGGDAAGPAGPRVGDVA 963

Query: 869  EHEEKIQSSIEKIF-----VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
                +     + +      +  P        G  LTG  D +   + G   + DYKT   
Sbjct: 964  GLLRRHLPPGDPVHRYADALEDPVLGEEGLRGY-LTGSIDAVLRRREGGFLVVDYKTNRL 1022

Query: 924  PKKETA----------------QKLIDPQLSLEAAALKAGSFSQIDCRKVA----NLFYI 963
                                        Q  L   AL      +      A     + Y+
Sbjct: 1023 GAPGEILTAWHYRREALDEAVLAAHYPLQALLYCVALHRFLRWRQPGYDPAVHLGGVLYL 1082

Query: 964  RLKQKFKIDCITNDKKKYS 982
             L+     +    +     
Sbjct: 1083 FLRGMCGPEVPAGEDGVPP 1101


>gi|320529153|ref|ZP_08030245.1| ATP-dependent nuclease subunit A [Selenomonas artemidis F0399]
 gi|320138783|gb|EFW30673.1| ATP-dependent nuclease subunit A [Selenomonas artemidis F0399]
          Length = 1281

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 93/955 (9%), Positives = 229/955 (23%), Gaps = 152/955 (15%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
             L + +    +KL   + +   +   +   + A+    A+   +    ++ E+       
Sbjct: 331  RLTKTVFAAWDKLLKRLPETAEDLCAAENRANADIRRFAQLTIEFHAAMQREKI------ 384

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
            A     +      A   L    +        ++ +                   G    I
Sbjct: 385  ARGILYFSDLEHEALHLLCAHPEQLQADPTMVDPTDIAVELQ------------GHFDAI 432

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE--KSTNITSSNTTY 288
            ++     +      ++  +A   N  IV    D       +             +  +  
Sbjct: 433  MVDEYQDTNGLQEGILRQIARGDNRFIV---GDVKQSIYRFRLADPVLFQQTYRAYRSGA 489

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
            +     ++++         E +  + +         +   +                ++ 
Sbjct: 490  AEGTLVTMSENFRSRAEVLEPINYIFSQIMTETAVDIAYDEKARLNPGRKFDALPGGKSL 549

Query: 349  IPNIQKCFSDVALIEADNE-----------------REEAISIAIALRMSLDENK----- 386
               ++     V   +  +E                   EA  IA  +   + E       
Sbjct: 550  AAPMELNLLRVDYTDRADEEEKEEGEEESGEELGKFEVEAHFIARRIAELISEKYIVHDG 609

Query: 387  ---------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                         L+ A +  A  +   L   GI            +    ++ +LL A+
Sbjct: 610  GGGHPLTYSDIVILLRAAKGRAGVLIDALRDAGIPAYADEPGGYFESGEIRMMLALLAAL 669

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                   A+A ++  P+      E    RA       ++     +    +L + ++ R  
Sbjct: 670  DNARQDTALAAVLASPMIGLRMEELAELRA--HTPRGSIYDMLTADGGDELPAELMTRAR 727

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                   +  W+           + ++         + T             + D     
Sbjct: 728  HA--LERIRAWRRYALVHSVPELLWMLYRDTGYYDYVGTLPGGVLRQANLRMLIDRASEF 785

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID--- 614
                +       R +  L       + +    +       +  +  + ++     +    
Sbjct: 786  ERTNERGLFRFLRYIDALRSRSTDLSAARTLGESENVVRIMTIHKSKGLEFPVVFLSNIG 845

Query: 615  --------GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP---- 662
                    G  +     +   L +    E+    +DTL L  + + +  +  A+      
Sbjct: 846  GSFNEKDTGGDLLYHAREGIGLRLFENTEAGRQRYDTLSLRRVKDVIARETKAEEMRILY 905

Query: 663  --------------------------------FLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                                             L+   ++   L  A    G++  D+  
Sbjct: 906  VAMTRAQEKLILTGTLNVTRSGKDKLEQLHEKCLTYAQETGAVLPDASILGGKSYLDWIA 965

Query: 691  ANGTRH---LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                RH        +  E       S   +  + L   D     ++           +  
Sbjct: 966  LALMRHPDGAQLFDADAEIAPYLPVSPAARFDVHLLDEDARAARRRAADEDDPILAAVRA 1025

Query: 748  TTKQPHYKRPKPFPPLEAQPR----------TYSFSEIKQLIN------DPYAVYARRIL 791
                P   R +    +                 S +E+K+          P    A    
Sbjct: 1026 DDPLPEGGRAEEVARILDWHYDARGTEHIHAKTSVTELKRRRAELIEEMPPPFAPALGDA 1085

Query: 792  KLDFIPHFKKD----------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
              +    ++                +RG   H  + +L     +         + +  ++
Sbjct: 1086 GAETAEAWETPRFLRSDACAYLTPMERGIAMHTFMQQL-----DLTDAADIDAIVRQANT 1140

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------ 895
              EK  L              +         +   + + ++  +P    + +        
Sbjct: 1141 LLEKGILTEAER--ESIRIEHVWKFAASRLGRRMRAAKAVYRELPFGRLLPAQKYYAEAQ 1198

Query: 896  -----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
                 I L G  D +     G   + DYKT        A+     Q+ L   A++
Sbjct: 1199 DAEDKIFLQGIIDVLFEEDDGGYVLLDYKTDRKISAAAARARYQFQIDLYGEAVE 1253


>gi|317154187|ref|YP_004122235.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944438|gb|ADU63489.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
          Length = 1047

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/421 (9%), Positives = 95/421 (22%), Gaps = 93/421 (22%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL+               +     T+RA QELR     + G+ +  LP   +L  +  + 
Sbjct: 505 TLMGRVARLIKQGEPARRILALTFTRRAAQELRDRLKTLRGENAE-LPQAGTLHSLCFDY 563

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
           +      +  + P  +             ++    P+              +       L
Sbjct: 564 WKHAYSETPIVLPEAAAK----------KLFAEVNPEFAGKNLDHHWTRYNLGRERLTDL 613

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
             +LA+                 +        W                     +     
Sbjct: 614 PADLAE---------------AHISYGNQKNHW---------------------DLVDYT 637

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                ++        +     +++       P    ++  +A  P+G  V    D +   
Sbjct: 638 DLLEFMLEQAGAPTFRMPYTQVLVDEVQDLTPLQLAVIRGIAG-PSGEGVFLIGDPNQSI 696

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             +                                    +   RL  +   +   ++  +
Sbjct: 697 YGFRGA-------------------------------AGDIQARLTELWPAIQSVTLTEN 725

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR--------- 379
                              K+ +  +  + + L E  ++  EA  I+  ++         
Sbjct: 726 YRSAQNILDCAGALFPEAPKLHSHVRAAASIHLFEGPDDIREATWISDRIKGLIGTTSHS 785

Query: 380 -----MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                   +      A++   + L   +   L R GI                + +    
Sbjct: 786 LADAGEHGELAPGDIAVLVRFKALIPIIHKTLKRAGIPCSTPELEGFWQEPRVASILHAA 845

Query: 435 N 435
            
Sbjct: 846 E 846


>gi|229814925|ref|ZP_04445263.1| hypothetical protein COLINT_01968 [Collinsella intestinalis DSM
            13280]
 gi|229809412|gb|EEP45176.1| hypothetical protein COLINT_01968 [Collinsella intestinalis DSM
            13280]
          Length = 1179

 Score = 64.9 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 99/884 (11%), Positives = 212/884 (23%), Gaps = 128/884 (14%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTG 237
                  +     +     E +A            A  +H        G    ++I     
Sbjct: 287  ELLALARAVGDEYAALKAERSALDNNDLLRLTYEALRDHPRIRDAYAGKFAMVMIDEFQD 346

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE--KSTNITSSNTTYSTHPQYS 295
            +      L++ +     G  +    D       +                   +   + S
Sbjct: 347  TDQQQVDLINFLTG-EGGRALCTVGDAQQSIYRFRGAEVEVFRRAQRRIEQGAAAGSEGS 405

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
            + KL+       E ++ +  V ++  G  M    + LP D           ++   +   
Sbjct: 406  VVKLVKNFRSHAEVLEYVARVFDDGQGGIMPSFLNLLPHDGRADGLRVAGASRRQALLVA 465

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
                    A     EAI+          +      L+      A      +   G++  I
Sbjct: 466  GGTTEERTAAK--AEAIAKRFRALADAGQPAGDMVLLLGGMTRAGVYADAIRAQGLDCVI 523

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMA-IATLVKHPLAKFGFPEKYLSRAKNALELV 474
            S G   ++T  +  + +L++ +  L D    +A ++  PL   G  E          +  
Sbjct: 524  SGGSVFASTEEAKTIRALVHMLGNLADTAQGLAPVLASPLFALGVQEFLALATAWDAQTG 583

Query: 475  ALRGNKNSYD--IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL--LVDHILQC 530
              R           D      D     +  T +    SRL ++     V   + +     
Sbjct: 584  ETRRRNIELGILFDDDAPGFGDLPLLARARTVLRRALSRLGKDPLASIVRDVVNESGWMV 643

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS----- 585
                   +    +     +I    +                   L  ++    L+     
Sbjct: 644  RLAERGAEGRAQAANVLKAIDAVAEAEAELGNAPRQVALAYDRFLTGKQAPGALNEEGGN 703

Query: 586  SLFSKIIETGSCIKANAIEWIDII---TRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
            ++    +     ++   +   +     +     ++V+        + + G       +  
Sbjct: 704  AVRIMTVHASKGLEFPVVAVSECFGIRSNSARMQSVRRDDGTLDLVALPGRFPDCRDSLG 763

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------------NLKTAEKYIGQA 684
            +LI G   E  + +  + +      + + L                  + +       +A
Sbjct: 764  SLIEGAEVEKQFKRYLSGSGATGPWLDASLVDDVCATGSAAEAWLSMRDEEDRLALEERA 823

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL----- 739
               +      R +              ++  L+  L L        L   G         
Sbjct: 824  RLLYVAMTRAREVCLLAMDAPVGRGKGSALALKPELDLTPAVLERILPDAGASLACDRLV 883

Query: 740  ----------------------------DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
                                              D     P  +    F  +E       
Sbjct: 884  FDNAQAGDFELIALRDFSYGGVVYEANAALADAEDPVADVPVSEPMDSFTLVEPANVYMR 943

Query: 772  FSEIKQLINDPYAV----YARRILKLDFIPHFKKDP------------------------ 803
                ++   D Y+             D     +                           
Sbjct: 944  VVPAERAPRDSYSYSSVSAELHEEAEDHPEPTEAPIEGASGEAAVSGGVEAPRDERAVPS 1003

Query: 804  ---DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
               D T  G+ FH     LI+        E    + +                   R  F
Sbjct: 1004 HEGDPTALGSAFHAACQWLIELDRADLPVERADALCRYW-----------GCTAAQRERF 1052

Query: 861  HKISHSFLEHEEKIQSSIEK-IFVNIPAKMAIESIGIHLT------GFADRI--DLLKSG 911
             +    +L  + + ++         +P   ++   G+         G  D +  D  + G
Sbjct: 1053 DEAVARWLSSDVRAEALAWPCRRAEVPF-YSLGMDGLVERFGPYAEGAIDLLCTDAARPG 1111

Query: 912  FVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALKAGSFSQID 953
               + DYKTG +     E  Q+    Q S+ A  L    + Q+ 
Sbjct: 1112 RALLIDYKTGGSSLETPEQLQEKHALQASVYADVLHKAGYEQVT 1155


>gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
 gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
          Length = 849

 Score = 64.6 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 54/442 (12%), Positives = 118/442 (26%), Gaps = 52/442 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            +     T +A  EL    +++T   +       +K+      +    +      ++   
Sbjct: 55  EILCLTFTNKACHELAERLLKVTNGLAKEVF---VKTFHSFCFQLIKEEAKNFGKISRDF 111

Query: 104 SNIQRLL--ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
           S +       L R ++     + D+      E  L   + P       K +         
Sbjct: 112 SVMDEEDGKFLVRQLMKDDYVIADLAYQYLQELKLYRLMIPKAYRDDYKRVVASFHQ--- 168

Query: 162 EEKKWEDLHALKNEKYGMWWLL-AADFLK----IASKYWTERLVELNASSP----VGYQI 212
                E    L+              FL        + +   L+E +        V    
Sbjct: 169 ----SEKAQKLQYSNRRSDAGAYTLGFLAQYGCWLYETYQTYLLENHLVDFNDLIVYASE 224

Query: 213 ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
            L   E     +     +++     +     +L+  +A     ++     D +     W 
Sbjct: 225 LLEDEEILERWRERFKVVMVDEVQDTSQFEYQLIEKLAKGKQFSVF---GDFNQTIYEWR 281

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN---EMYGRSMVISK 329
               +        T           +L   L +    +KRL  +S    E   ++ +I+ 
Sbjct: 282 DSNPELILSQIMTTFNP-------KRL--ELSLNYRSLKRLVQMSANYLENAKKARLINP 332

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
              P                             EA  ++EE   I   L+    ++   +
Sbjct: 333 RLSPRVIEAANEEVGGRPV------------FYEAQTQQEEMDFIIDHLKHYRLDDLANT 380

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            ++T       +V   L   GI   +   + L        L + +       D +++  L
Sbjct: 381 VILTRTNKQNIQVSNFLRNVGIPCYLIEDLSLFRRKVVKDLLAFVKFQLNPFDHLSLERL 440

Query: 450 VKHPLAKFGFPEKYLSRAKNAL 471
           +  PL       +  ++     
Sbjct: 441 L--PLICPEVSPELFNQTYRQR 460


>gi|224282512|ref|ZP_03645834.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313139664|ref|ZP_07801857.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132174|gb|EFR49791.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
          Length = 1401

 Score = 64.6 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 81/818 (9%), Positives = 206/818 (25%), Gaps = 77/818 (9%)

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                 S    +  + ++A  +         + +             M    + P+     
Sbjct: 620  EADGGSDIATFADSQVKAIVKQYRDRVPHAVFLID-----------MMMRDDLPSLLSRR 668

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL-LDFLDIKREDVKRLGNVSN 318
             G D      I             +N         ++  L LD   I  + VK      N
Sbjct: 669  GGFDETTSRRIIQAGEVLQRVHAVTNHPLKEVIDAAVRALNLDIDTIVAQAVKNPSQPVN 728

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIP--NIQKCFSDVALIEADNEREEAISIAI 376
                RS + S + L    +      +        +       +    A      A  + +
Sbjct: 729  PTQARSPLQSVAALVDTYTQEIVEGVNPTLRGFMSWVDSLGQIEEDTAAVPDTPADVVLM 788

Query: 377  ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH--SSILTSLL 434
             +  +        A+++    +    +  L           G   S T     + + S  
Sbjct: 789  TIHQAKGLEWDAVAVVSMQSGVFPSNQGGLHVELDAEHPGGGAGESWTPPEYKATVRSWA 848

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            +    +   + +   +         P+        AL+ V +  ++   D+         
Sbjct: 849  DDPAAVPAPVRVDAGILPRFPHDANPDDAPVETLRALDDVEVIDDEFYGDL--------- 899

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            R     ++  V    S    +++E    L+      +  +   +  K++       S   
Sbjct: 900  RSKDIGDDMDVADPSSWYLTQEEEYGRRLLADER-RLAYVALTRAKKDALLTYSQYSILD 958

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            +     L           P++++ E   +L      +    S     +  + +    + D
Sbjct: 959  RDPSQYLNRPGKRPSASKPSVFWTEMQDSLCHESGLVSACKSG----SAGYSENADAIAD 1014

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                      +S      +L+   ++       G +   + ++  +  + + + + +   
Sbjct: 1015 SSPDLAVAGAASGASAHPSLDQLGVDRPQGFFVGDHATEYERDVVEEAWNAPLEEREQG- 1073

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
                     +        G           + +     +R L     L    F    ++ 
Sbjct: 1074 GGPTWPAKLSEETLSKLTGGMSGDSVLVTDDPDSLLARARMLVEDPDLMPWSFGRGEREI 1133

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
             +        L    +Q           +  +     +  + + I               
Sbjct: 1134 DRYVRRQAEHLLEHGRQNVTALQARAGHMTQREERGYWRGLIRPI--------------- 1178

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL----------------MKQI 838
                 +      + GTLFH    + I    +  + + + +                 + +
Sbjct: 1179 ----PRVASPAAEAGTLFHAWAEQFINAYGDGQSIDADGIGAYDSSSIETGTAGTCREPV 1234

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKIFVNIPAKMAIE-SIGI 896
                   +     +         +    +     +   S     +      ++I     +
Sbjct: 1235 TRESLLHDLSELEMKSDTLTAKERQLTVWQRRLAESTWSERRPAWAERQIVVSIPQLGDV 1294

Query: 897  HLTGFADRIDL------LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
             + G  D +          +    I D+KTG  P+K    +    QL      L      
Sbjct: 1295 IVNGKLDAVFHGGLDANDPTKQYTIVDWKTGCKPRKPQDIEHKLVQLDWYRLLLSY--IE 1352

Query: 951  QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
             +   ++    Y  L +  +     + + K   + L+E
Sbjct: 1353 HVPLDRIDATLYY-LSEPDEGARELHARAKTEQEILAE 1389



 Score = 56.1 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/309 (10%), Positives = 71/309 (22%), Gaps = 37/309 (11%)

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
           +   + +T  L++    +     + L                       S         +
Sbjct: 294 ERYRRRYTHVLLDEYQDTSTTQAMLLATLFHPQSADADADR--------SSSRWREAARS 345

Query: 249 VANHPNGAIVL------PGLDCHIPTAIWNTITEKSTNITSSNTTYS-THPQYSLAKLLD 301
                   + L         D       W   +  +  +   +         Y L+    
Sbjct: 346 AGGWSKDGVGLSRSAVNAVGDPFQSIYAWRGASPGAFRMFQKDFGMPSDAKPYPLSVTRR 405

Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
              I       L         R+            S +     + N           + +
Sbjct: 406 NTCIVLRAANNLTEPLRIPPRRA-----------GSSLMREVDVANLSAMDNAAEGTIGV 454

Query: 362 IEADNEREEAISIAIALRMSLDENKKK-----------SALITADRNLARRVKLELTRFG 410
           +      +EA ++A   + ++   +K             A++   +    +   EL R G
Sbjct: 455 LGFATFGQEADAVARFAKQAIARYRKDDAATAASDTPHVAVLFRGKTHMAQFAQELERAG 514

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
           +   +     L        L +LL+A     D  ++  L+  P    G            
Sbjct: 515 LTTLVVGYSALLERPEVQDLIALLHATADHTDSASLMRLLATPRFGLGSESLTRLAGMAE 574

Query: 471 LELVALRGN 479
                 R  
Sbjct: 575 DLDSQCRYR 583


>gi|269123274|ref|YP_003305851.1| hypothetical protein Smon_0494 [Streptobacillus moniliformis DSM
           12112]
 gi|268314600|gb|ACZ00974.1| hypothetical protein Smon_0494 [Streptobacillus moniliformis DSM
           12112]
          Length = 618

 Score = 64.6 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/316 (14%), Positives = 104/316 (32%), Gaps = 33/316 (10%)

Query: 671 DLNLKTAEKYIGQ-AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
           +L L  ++  I +   + +     + ++  +    E+   +    +L  L+         
Sbjct: 255 ELGLPISDNLIYENLYNIYRNIVMSNNIYISYIKNEDENISEM-PFLTELMFNNNLKAEK 313

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRP-------KPFPPLEAQPRTYSFSEIKQLINDP 782
                 +      + LD +  +  +               L       S +++  LIN  
Sbjct: 314 KEVTMSEKANILNQLLDKSNIRKVFNPVYLTNNDIMHKNELLNDFNKISVTKLLSLINSE 373

Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
              Y     K++    + +D +  + G + HNI+  +I K          + + + I   
Sbjct: 374 IEYYLSS--KIEESDIYNEDIESVEVGNITHNIMELMINKVGKNINHVKKNELLEYIKEA 431

Query: 843 FEKENLPPHIDIIWR----------HLFHKISHSFLEHEEK--IQSSIEKIFVN--IPAK 888
                     +I+ +          +   K    F +  +K  I  +I  ++    +   
Sbjct: 432 ISNVINQKDNNILEKYKKYFYITYINDLPKTILDFFDKLKKVLIHENIVDVYSEKVVEFD 491

Query: 889 MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
           + +E   I + G  D +   +     I D+KTG    K+   K+   Q+++ +       
Sbjct: 492 VELEDRIIKVNGKTDLVVETED-KYIIIDFKTGKF--KKEKMKVYANQVTIYSYM---NE 545

Query: 949 FSQIDCRKVANLFYIR 964
           F      KV  + +I+
Sbjct: 546 FKD--KEKVGYISFIQ 559


>gi|87309221|ref|ZP_01091358.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645]
 gi|87288212|gb|EAQ80109.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645]
          Length = 759

 Score = 64.6 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 85/727 (11%), Positives = 181/727 (24%), Gaps = 125/727 (17%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             +     +     +    +     T +A  E+RS    +   ++     I +       
Sbjct: 36  RVITHRIAHLLSQGVRPTQIAALTFTNKAADEMRSRLDRLAPGENVW---IGTFHRFCAR 92

Query: 88  KFTADLL-LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
                        N  + +    L L          L   I++   +   + P   A+AI
Sbjct: 93  LLRQYAEYRGLQPNYTIYDTSDSLSL----------LKRTIRETDVQLTHATPEQVASAI 142

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             AKN     D                              ++     +   L + NA  
Sbjct: 143 SWAKNHLIEADRYVG-GVN-----------------ATGSIVERVYPKYQAALQQANAVD 184

Query: 207 PVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                + +     E+             I++     +      ++  ++       V   
Sbjct: 185 FDDLLMHVTLLLKENEELRASLDERFRYILVDEYQDTNLPQYAIVRAMSIQYPNLGVT-- 242

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            D       W     K+     S+      P   + +L          +     +     
Sbjct: 243 GDPDQSIYGWRGANLKNILEFESDF-----PAVKVVRLEQNYRSTPNILSVADALIANNK 297

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            R      +  P                         V +I+    +EEA +IA  +   
Sbjct: 298 QRKKKSLFTDNP---------------------AGKAVRMIQYSTHKEEAQAIAARISAQ 336

Query: 382 LDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
           + +     +  A+      L+R  +  + + G+   I +G+          L +    + 
Sbjct: 337 VAQGKRRPRDYAIFYRINALSRTFEDAMRQQGVPYMIVSGVEFYHRKEIKDLLAYALLMN 396

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
              D +A   +V  P    G       R   A E               L  L   R A 
Sbjct: 397 NPRDDVAFERIVNVPKRAIGKATLLKVRLHAATE--------------GLSMLEAAREAG 442

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
             +                  A + +   +     L T   +         +S+    + 
Sbjct: 443 MIDGLGN-------------RAAVALAKFVALFDRLSTKINDPVEEILGFVLSE----SE 485

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              Q    D+      L   EE  + +  +         ++     +++  T + + +  
Sbjct: 486 FKRQYEATDDVEDQTRLENIEELLSSAREYDTEHPHDGTLE----HYLEEKTLVNETDDF 541

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                +   + ++    ++ L F  + +  L +G+ P   ++                 E
Sbjct: 542 ---DAEMDRVTLMTLHAAKGLEFPVVHIVALEQGLLPHERSREN--------------PE 584

Query: 679 KYIGQAAHDFEMANGT-RHLIYTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
           +   +    F         L  + +     R     TI S +L  L         +    
Sbjct: 585 QLEEERRLLFVGITRAEEELDLSMARYRDFRGKRNMTIPSPFLMELPRDEMEVTEEQTAF 644

Query: 734 RGQCYLD 740
                LD
Sbjct: 645 APDFPLD 651


>gi|317490668|ref|ZP_07949135.1| UvrD/REP helicase [Eggerthella sp. 1_3_56FAA]
 gi|316910230|gb|EFV31872.1| UvrD/REP helicase [Eggerthella sp. 1_3_56FAA]
          Length = 733

 Score = 64.6 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 58/527 (11%), Positives = 114/527 (21%), Gaps = 92/527 (17%)

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
               I++            LM  +A +     V+   D       W     +        
Sbjct: 235 RLEYIMVDEFQDIDGLQHELMEVLAGYHKNLFVV--GDPDQTIYTWRGADVRYLLDFDKR 292

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
              +         +L+        V    ++  +   R      +        +      
Sbjct: 293 FPGT-----RTVMMLENYRSAPRVVAVANSLIEKNRERVPKRLAAMRSVHGPTVWRH--- 344

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVK 403
                             A +   EA  IA        E    +  A++      +R V+
Sbjct: 345 ------------------AKSPDGEAAWIAQGALALHGEGVAYRDMAVLYRAHYASRPVE 386

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
             L R  +   + +G+P           S L  +   +D            A+     K 
Sbjct: 387 EALLRAEVPHAVYSGVPFFGRREIKDALSYLRLVAYQDDLD---------FARVANAPKR 437

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
              A+    L              L+  V D +                        + L
Sbjct: 438 NLGARRMAFLREKADELGCSLFEALERFVDDDL---------------FKRTKARQLLQL 482

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
           VD                        +S+         ++      R   +    +    
Sbjct: 483 VDRFRSSYEG--------------RPVSEVLAAV--LSESGYERALRTEGSQERLDNLAE 526

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
           L     +   T    +     ++     L          +    + ++    ++ L F  
Sbjct: 527 LKQSVYEFETTCGE-EVTLEHYLAHTALL---TNADAMDDAQDKVRLMTVHAAKGLEFAH 582

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRS 702
           + L  + EGV P                    T +    +    F      R  L  T +
Sbjct: 583 VFLCSMTEGVLPSRKTD---------------TPQGMEEERRLAFVAMTRARDGLYLTEA 627

Query: 703 --LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                   P   SR+L  +            ++            D 
Sbjct: 628 EGRGHEGAPRYPSRFLLDIDPAALEFSNKPAERELDDARAAYALADR 674


>gi|323698557|ref|ZP_08110469.1| UvrD/REP helicase [Desulfovibrio sp. ND132]
 gi|323458489|gb|EGB14354.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132]
          Length = 1032

 Score = 64.6 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/419 (10%), Positives = 98/419 (23%), Gaps = 96/419 (22%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
           VE    + +NP     +     T+RA QELR         ++  +P   +L  +  + + 
Sbjct: 495 VERLMDEGVNPK---RILALTFTRRAAQELRDRL-RALRGENADMPQAGTLHSLCFDYWK 550

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
                +  + P ++             ++    P+              ++      L  
Sbjct: 551 HAYSETPIVVPEIAAK----------KLFAEVNPEFAGKNLDHYWTKYILAREQLTELPA 600

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
           +LAD                 +        W      L   +      L +  A +    
Sbjct: 601 DLAD---------------AHINYGNQKNHW-----DLVDYTDLLEFMLEQSGAPTFHM- 639

Query: 211 QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
                              +++       P    ++  +A    G  +    D       
Sbjct: 640 ---------------PYAHVLVDEVQDLTPLQLAVVRGIAGAS-GEGLFCIGDPKQSIYG 683

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
           +                                    +    L  +   M   ++  +  
Sbjct: 684 FRGA-------------------------------VSDVQTHLNGLWPNMEQVTLTDNYR 712

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR----------- 379
                     N      ++   +   + + L EA +   EA  I+  ++           
Sbjct: 713 SGQVILDGAGNLFPDSPRLIARRDVDATMHLFEAPDAMREATWISDKIKGLIGATSHSIV 772

Query: 380 ---MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
               + D      A++   + L    +  L R G+ +              + +     
Sbjct: 773 DSEGAGDLAPGDIAVLVRFKALIPVYEKALKRAGVPVSTPELEGFWQEPRVAAILKAAE 831


>gi|254304120|ref|ZP_04971478.1| ATP-dependent DNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324312|gb|EDK89562.1| ATP-dependent DNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 919

 Score = 64.6 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/400 (13%), Positives = 136/400 (34%), Gaps = 50/400 (12%)

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL-NEGVWPKNTAK 660
             ++++I+ +    E    +   +  +  L   +S+ L F  +I+  L ++     + ++
Sbjct: 540 FTKYLEILKQSRVDEIFSEEDYPNDCIPFLTIHQSKGLEFPVVIVFSLYSKPNVSGDLSR 599

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQR 718
              + R++ S+  +   EK        F +A       L+ +   +  +       +  R
Sbjct: 600 QTSIDRLINSNSKISEIEKEYFDFYRKFYVAFSRAKNLLVLSCYEKGVSENFKPFFYSVR 659

Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            +     D                  LD  +K             + +      ++I   
Sbjct: 660 GVNSLQFDIDQIN-------------LDEVSK------------KDERRVLSYTTDIALY 694

Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
              P   +      +    +   D      G + H  I  + K  + K     ++ ++ +
Sbjct: 695 RYCPMKYFL-----VREKEYSTYDKKVFSLGIITHKAIEHINKSFLQKQEIFSDNYIEDL 749

Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
           + + ++ +N+    ++        I+  ++E+E+     I+K+      ++        L
Sbjct: 750 VKNIYKFQNIDLDNNV---EKIIDITKKYMENEKDNFKYIKKVEA-SEFRVE---DNYIL 802

Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQ--KLIDPQLSLEAAALKAGSFSQIDCRK 956
            G  D I   ++  + I D+KTG        +       QLSL    L+     +I    
Sbjct: 803 YGQIDLILEDEN-EIKIIDFKTGK---YNEIEFSSNYRQQLSLYKLLLQKKYDKEIK--- 855

Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
              L+Y+   +  K   I ++  K   + +++ +   L +
Sbjct: 856 -TYLYYLEEDKPKKEILIDDEDLKEDLENINKTTQDILDK 894


>gi|85711556|ref|ZP_01042614.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina
            baltica OS145]
 gi|85694708|gb|EAQ32648.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina
            baltica OS145]
          Length = 1230

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 91/898 (10%), Positives = 208/898 (23%), Gaps = 183/898 (20%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTVANHPN 254
               +   +  + +   +     E        + PI ++     + P    + + +     
Sbjct: 356  RAEMNHDDMLTRLRDALRGPDGEQLATTIRQQYPIALVDEFQDTDPVQYEIFNRIYRLKE 415

Query: 255  GAI---VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-------- 303
                  +    D       +      +      +T    +   +  +    +        
Sbjct: 416  PLPDTGIFLIGDPKQAIYSFRNADIFTYLKARRDTEGRHYSLATNFRSSTQMVEAVNYLF 475

Query: 304  --DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                + E    L     +       +S + +         +  LE          S+   
Sbjct: 476  QRAEQYERGAFLFKQEEKNELPFEPVSANGVKTTFRHRLRSQQLEPAPALYWSVSSEQKR 535

Query: 362  IEADNEREEAISIAIALRMSLDE----------------NKKKSALITADRNLARRVKLE 405
             ++D     A   A  +   L++                  K  A++  +   A  ++  
Sbjct: 536  KKSDAFNHLASHHAQLIVNLLNDPQAGYYDDNDALQQRVCAKDIAILVNNFAEADAIRTA 595

Query: 406  L-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
            L  R   ++ +S    +     +  L  +L A     +  A+ T V  PL      E   
Sbjct: 596  LSARGVKSVYLSERESVYAQPVARDLLYILKACAAPRNASALKTAVAAPLLNLSLSELIQ 655

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
             +     E    R      D  ++                        ++    +   L+
Sbjct: 656  LQ---EDENTWERTVDTFIDFHEV----------------------WRNQGVLAMLHRLM 690

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
             H     T L      +      L I++  +     L+ +    +     ++  +     
Sbjct: 691  HHFQVPATLLQDKINGERKLADALHIAELLQQNSMALEGMAALVNDFAEKVYERQSFGAS 750

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
            S                              E           + ++   +S+ L +  +
Sbjct: 751  SRTQ-------------------------RDEQQLRLESDDDLVKVITIHKSKGLQYPLV 785

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK-----------TAEKYIGQAAHDFEMANG 693
             L  +      +   K P      Q D+ +              E         +     
Sbjct: 786  FLPFITYTPQEQYRIKPPMTYHDEQGDVQVLWSKDDSAKSRVLDELLAEDLRKLYVAVTR 845

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY------ 747
             +H  +               +L     L    +    +  GQ  +    KL+       
Sbjct: 846  AQHATFITVENVGQFEHNPLAYLLGDDALTDDLYKAASEAWGQSDVSVVSKLEDDERFEA 905

Query: 748  -----TTKQPHYKRPKPFPPLEAQPRTYSFSEIK-QLIND-----PYAVYARRILKLDFI 796
                         R  P   L  +    S+S ++ +  ND     P       +L+    
Sbjct: 906  LQEQVAEYTVLKAREMPRTQLLERWWVSSYSALRYRAANDYTQSGPQTAVEMNLLEEANT 965

Query: 797  PHFKKDPDRTDR----------------GTLFHNIITEL-------IKKRINKNTPEINH 833
               + + +  D                 GTL HN++          +     + +  I  
Sbjct: 966  ATGEGNVEANDLTYLPSHLHQFPKGATPGTLLHNVLEHCAIEGFSTVLSDPQRLSDVIAQ 1025

Query: 834  LMKQIIDS---------------------------HFEKENLPPHIDIIWRHLFHKISHS 866
             ++  +                                           W  +    +  
Sbjct: 1026 ELRGEVWDEYRDNLAHWLMQYLALPMVFSDTMQPTALSDLTSYKAEPEFWLPVIELEAEQ 1085

Query: 867  FLEHEEKIQSSIEKI-FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG---- 921
                 ++     +    +     + +      L GF D +   + G   + DYK+     
Sbjct: 1086 LDALIQRHLHPGQSRPRLE---SIELNG---MLKGFIDLVFEHQ-GQYFVVDYKSNWLGD 1138

Query: 922  -------DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR-----KVANLFYIRLKQ 967
                        +      D Q  L   AL      ++         V  + Y+ L+ 
Sbjct: 1139 SDDDYSEVAMTDKILASRYDVQYVLYTLALHRQLKQRLGDEYDYDTHVGGIAYLFLRG 1196


>gi|219126183|ref|XP_002183342.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405098|gb|EEC45042.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 366

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 71/259 (27%), Gaps = 60/259 (23%)

Query: 743 RKLDYTTKQPHYKRPKPFPPLEA---QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
              D    +   +   P          P   S S I +    P +   + + KL      
Sbjct: 2   AAFDPVDSEKPAELLDPQTLHNGTIPYPTALSPSAILEFQKCPQSYLFQYLYKLKQPTSL 61

Query: 800 KKDPDRTDRGTLFHNIITELIK-KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
                   +G++ H+ + ++   +   ++   + +L +++   + E +            
Sbjct: 62  -----ALAKGSMLHHALEQVYDLQPAERDLSTLQNLFRRVWSQNRESDVYRDLFATPEAA 116

Query: 859 LFHKI-----------SHSFLEHEEKIQSSIE-KIFVNIPAKMAI--------------- 891
               +             +++  E     +    +   I  +  +               
Sbjct: 117 RDLAMESVWGREGLQLLQNYVRLENPQAVTRPNPVQREIWVRAHLTIDSSQGATGYVLPG 176

Query: 892 ------------ESIGIHLTGFADRID-----LLKSGFVDITDYKTGDNPKKE------- 927
                       ++    + G  DR+D       K   + I DYKTG  P  +       
Sbjct: 177 RKPQATSTPNNKDAAAFLVRGIVDRLDMVRTPESKQAVLQIVDYKTGKAPHLKYSAGMNQ 236

Query: 928 TAQKLIDPQLSLEAAALKA 946
             +     QL + A  L+ 
Sbjct: 237 KIRDEALFQLQIYALLLRE 255


>gi|309809847|ref|ZP_07703697.1| conserved domain protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308169799|gb|EFO71842.1| conserved domain protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 434

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 70/243 (28%), Gaps = 34/243 (13%)

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
           P    P     L       S S+++    + Y  +    L L     F+ +      G  
Sbjct: 26  PVNLTPALAQELYGNNINISISQLETFYANSYEYFLTYGLHLHKR--FENELTNIQSGNY 83

Query: 812 FHNIITELIKKRINKNTPEIN------HLMKQIIDSHFE-----KENLPPHIDIIWRHLF 860
           +H  +  L+K                  ++   I    +     +E L    +       
Sbjct: 84  YHETMDRLVKYLKQHKLDFAELTKDKISVILANIQDELKTKGSYRELLGDPFNEFLFKCL 143

Query: 861 HKISHSFLE--HEEKIQSSIEKIFVNIPAKMA--IESIG------------IHLTGFADR 904
            + +   +   H+   Q+    ++  +       I  +             I L G  DR
Sbjct: 144 DRTTKKVVNYWHQNMFQTKFCPLYSELSFGNKEYIAGLSYQFIDKQQKTHHISLRGKIDR 203

Query: 905 IDLLK--SGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG-SFSQIDCRKVAN 959
           +DLLK     +  + DYK+          +  I  Q+    + L+        +   +  
Sbjct: 204 VDLLKDCDNEILQLIDYKSSAKKFDFNLFKNGISMQMLSYLSVLQDNSHIFSTNPVNIFG 263

Query: 960 LFY 962
            FY
Sbjct: 264 AFY 266


>gi|229137929|ref|ZP_04266528.1| ATP-dependent nuclease subunit A [Bacillus cereus BDRD-ST26]
 gi|228645586|gb|EEL01819.1| ATP-dependent nuclease subunit A [Bacillus cereus BDRD-ST26]
          Length = 235

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 29/182 (15%)

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            R  ++       KK     +RGT  H ++  +     +   P    ++++ I     KE
Sbjct: 39  LRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITEEVIREQIAGMVNKE 93

Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------SI 894
            L    +        K+   F     K   + + +   +P  M +               
Sbjct: 94  LL--TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGQSGE 151

Query: 895 GIHLTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALK 945
            I + G  D +   + G + + D+KT    G  P      K         QLSL A AL+
Sbjct: 152 SILVQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALE 210

Query: 946 AG 947
             
Sbjct: 211 KS 212


>gi|34763240|ref|ZP_00144202.1| DNA helicase II [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887093|gb|EAA24202.1| DNA helicase II [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 919

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/400 (14%), Positives = 131/400 (32%), Gaps = 50/400 (12%)

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL-NEGVWPKNTAK 660
             ++++I+ +    E    +   +  +  L   +S+ L F  +I+  L        + ++
Sbjct: 540 FTKYLEILKQSRVDEIFSEEDYPNDCIPFLTIHQSKGLEFPVVIVFSLYTTPNVSGDLSR 599

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQR 718
              + R++ S+  +   +K        F +A       L+ +   +  +       +  R
Sbjct: 600 QTSIDRLINSNSKISEIDKEYFDFYRKFYVAFSRAKNLLVLSCYEKGVSENFKPFFYSVR 659

Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            +     D                  LD  TK+   K                 ++I   
Sbjct: 660 GVNSLQFDINQIN-------------LDEVTKKDEIKILS------------YTTDIALY 694

Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
              P   +      +    +   D    + G + H  I  + K  + K     ++ +K +
Sbjct: 695 RYCPMKYFL-----VREKEYSTFDKKVFNLGIITHKAIEHINKSFLQKQKIFSDNYIKNL 749

Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
           + + ++ +N+    ++        I   +++ E+     I+K+      ++        L
Sbjct: 750 VKNIYKFQNIDLDNNV---ERIIDIVKKYIKDEKDNFKYIKKVEA-SEFRVE---DNYIL 802

Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQ--KLIDPQLSLEAAALKAGSFSQIDCRK 956
            G  D I   ++  + I D+KTG        +       QLSL    L+      I    
Sbjct: 803 YGQIDLILEDEN-EIKIIDFKTGK---YNEIEFSSNYRQQLSLYKLLLQKKYDKDIK--- 855

Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
              L+Y+      K   I ++  K   + +++ +   L +
Sbjct: 856 -TYLYYLEEDDPKKEILIDDEDLKEDLENINKTTQDILDK 894


>gi|295090956|emb|CBK77063.1| Superfamily I DNA and RNA helicases [Clostridium cf.
           saccharolyticum K10]
          Length = 1133

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/440 (12%), Positives = 105/440 (23%), Gaps = 56/440 (12%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
           P +     +   +     V   R         + +T    T RA +ELR        +  
Sbjct: 534 PGTGKTGTLTARIRCLLEVRRVRP--------SEITAVTFTNRAAEELRERLKREMPRHR 585

Query: 73  TILPIIK--SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
           TI   I+  +   +                     +   LEL  L     + L +    +
Sbjct: 586 TIS-RIQTGTFHSLCYSMLRQAGAEF--------ELADSLELTEL---ASDVLKEKKLKI 633

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            P   L    +     W A + A   +  + E         L +EK            + 
Sbjct: 634 RPAEFLRRVSAEKCRRWEAGDAACGKEACKEE-------KNLLSEKQ-----------EE 675

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-----TKGPIIIAGSTGSIPATARL 245
           A + +  RL E         QI ++R   E              +++       P   RL
Sbjct: 676 AFELYQRRLREAGLYDFDDLQIEVLRLLEEDREAAAGLCSRFRYLLVDEFQDISPIQYRL 735

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           +        G  +    D       +     +      +     T            L I
Sbjct: 736 IRNWNQ--EGRELFVIGDPDQSIYGFRGSDPECFRRLLTEFP-ETCTVRLEQNYRSSLQI 792

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                  + N             +                      I +    + +++A 
Sbjct: 793 TEGACAMISNNPGGERRLISAAGEGLPIRIAKAAGRLSEGIFTAREINRMIGGIDMLDAQ 852

Query: 366 NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
                      A++     +    A++      A  ++  L + GI   ++         
Sbjct: 853 ERE--------AVQEKKVRSFSDIAVLCRTHRQAEEIEECLRKEGIPCIVTGRGEFLEAE 904

Query: 426 HSSILTSLLNAIFKLNDFMA 445
                T    ++   +    
Sbjct: 905 TVREATGFFRSLLHDSSDTE 924


>gi|254821918|ref|ZP_05226919.1| hypothetical protein MintA_18442 [Mycobacterium intracellulare ATCC
           13950]
          Length = 400

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 94/361 (26%), Gaps = 37/361 (10%)

Query: 3   NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57
            ++  V    P          A    T+     +   N     A V     T++A     
Sbjct: 40  EEQSAVIAAPPGPLVVIAGAGAGKTETMAARVVWLIANGYAEPAQVLGLTFTRKAAGQLL 99

Query: 58  QELRSEFIEITG------KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE 111
           + +RS    + G        +   P    +       F   LL  Y L  PV    RLL 
Sbjct: 100 RRVRSRLARLAGVGLGPVGDAAAEPEGAPVIS-TYHAFAGSLLRDYGLLLPVEPDTRLLS 158

Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171
              L  +  + +     +L+ +   +   S    + L   LA+ +           +L  
Sbjct: 159 ETELWQLAFDVVNGYRGELHTDKTPAAVTSM--VLRLWGQLAEHLVDTGQLRDTHVELER 216

Query: 172 LKNEKYGMWWLL-------AADFLK---------IASKYWTERLVELNASSPVGYQIALM 215
           L +      +             L                 ER+             +  
Sbjct: 217 LVHGLPAGPYQRERGPSQWLLRLLGTQTERAELVPLLDALDERMRAEKVMDFGMQMASAA 276

Query: 216 RAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPT 268
           R  A         +     +++     +  A    +S +      +G  +    D     
Sbjct: 277 RLAAGFPQVGEDLRARYRVVLLDEYQDTGHAQRIALSALFGGGVDDGLALTAVGDPIQSI 336

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             W   +  +    +++   S      + +L          ++    VS E   RS+ + 
Sbjct: 337 YGWRGASATNLPRFTTDFPRSDGTPAPVLELRTSWRNPPRTLRVANAVSAEARRRSVAVH 396

Query: 329 K 329
            
Sbjct: 397 A 397


>gi|94264521|ref|ZP_01288308.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
 gi|93455080|gb|EAT05307.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
          Length = 771

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 78/750 (10%), Positives = 186/750 (24%), Gaps = 117/750 (15%)

Query: 12  APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
            P          +    TLV    +          + +   T++A QE+ +        +
Sbjct: 45  PPGPILVIAGAGSGKTRTLVHRLAWLVEQGTPPEQLLLLTFTRKAAQEMTA--------R 96

Query: 72  STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
           +  L     L              + NL       +    +            D    + 
Sbjct: 97  AGWL-----LDGSCRRVTGGTFHATANLLLRRYATR----IGYQANFSIIDQSDAEGIIN 147

Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                             + +  I+           DL   ++E    +     D +   
Sbjct: 148 LLKSSLGLGGAGRRFPSRRLILGILSKAVNVGSSVSDLVEAEHEHLAEF----LDDILAI 203

Query: 192 SKYWTERLVELNASS-----PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
           ++++ +  ++              ++     E    +      I++     + P  A ++
Sbjct: 204 NQHYQQFKLDHGLMDYDDLLLNWRRLLRDDREVREELAQRFQAILVDEYQDTNPIQAEIV 263

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
             +A       V+   D       +     ++      +   +      + +L +     
Sbjct: 264 RLLA--AQRRNVMAVGDDAQSIYSFRGADFRNIMEFPDHFPGT-----RVVRLEENYR-- 314

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                     S            +  P        + +     P             A N
Sbjct: 315 ----------SIPQILEVGNAIIAPAPVKYPKKLFSRLEGGSRPL---------FHAARN 355

Query: 367 EREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
           E E+A  +   ++    E +  + A++      + +++LELT  GI+ +   G+ L+ + 
Sbjct: 356 ESEQARFVVEKIKELRRELDASQIAVLFRSGFHSYKLELELTANGIDFEKRGGLKLTESA 415

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
           H   + +    +    D ++   L+             +      LE  A  G       
Sbjct: 416 HIKDVLAHFRVLCNPADRLSWHRLLLLLDKIGPKTAARIIDHLPLLEQEAGPGEGQRPLD 475

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
             L +L                      E  ++L  LL D     + P       +    
Sbjct: 476 GSLAALKAF------------PAGKAWGEGMQKLLQLLADINDPGLAPAELL---EQVLI 520

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
               +                            E+ + L + +  + +  + +  +    
Sbjct: 521 YYQPLLRHL------------YPDDYPRRQRDLEQLRPLLAGYESMDDFLAELALDPP-- 566

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                      + +   +    L +     ++ L ++ + +  L EG +P N A      
Sbjct: 567 -----------SPEVDDDGGGRLVLSTVHSAKGLEWEAVFVIHLAEGKFPANQAVG---- 611

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIP-----TIASRWLQRL 719
                      A +Y  +    +  A   +  L      +             S +L  L
Sbjct: 612 -----------AAQYEEERRLLYVAATRAKRWLYLVYPRQSTGADRRPLFCEPSPFLAPL 660

Query: 720 LVLGGTDFFDNLKKRGQC-YLDWTRKLDYT 748
                       +  G+  +       D  
Sbjct: 661 PPELLRGSGSGGEAAGRPDWPSAPPAGDDP 690


>gi|317495506|ref|ZP_07953874.1| hypothetical protein HMPREF0432_00476 [Gemella moribillum M424]
 gi|316914320|gb|EFV35798.1| hypothetical protein HMPREF0432_00476 [Gemella moribillum M424]
          Length = 1283

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 70/236 (29%), Gaps = 56/236 (23%)

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT---- 817
              E+    +S S+I     +PY  + +R+L +          D    G  FH I+     
Sbjct: 904  ERESYFSKFSISKISDYEKNPYLFFIKRVLDIKEEQTID--IDNLVIGRFFHAIMADERT 961

Query: 818  -ELIKKRINKNT--PEINHLMKQIID------------------SHFEKENLPPHIDIIW 856
               IK    K +   E ++ +    +                         L    + I 
Sbjct: 962  VRFIKANGEKLSVSEEYDNDIVNKFEVRKLIHKVVFDNSNKDIVETLRLIELLSTHNYIL 1021

Query: 857  RHLFHKISHSFLEHEEK--IQSSIEKIFVNIPAKMAIE---------------------- 892
            + +  +I    +  E K    +     F+  P ++ I                       
Sbjct: 1022 QTMLRRI-ELAIAVEIKYCSLTKYSPTFLEKPFELTINKEKITCKELESGKVIEKQLGST 1080

Query: 893  --SIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALK 945
                 I   GF DR+D L    + + DYK+       E+ +     Q+   + A +
Sbjct: 1081 YNIPNIKFVGFIDRVDTLG-KNIVVIDYKSSQTDFSLESLELGFISQILTYSLACE 1135


>gi|282856086|ref|ZP_06265372.1| DNA helicase II [Pyramidobacter piscolens W5455]
 gi|282586107|gb|EFB91389.1| DNA helicase II [Pyramidobacter piscolens W5455]
          Length = 716

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 64/557 (11%), Positives = 133/557 (23%), Gaps = 90/557 (16%)

Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
             E     +     I+I           RLM  +        V+   D       W   +
Sbjct: 210 EPEIRRKWQQRLEYIMIDEFQDIDGLQYRLMEALCGFHKNLFVV--GDPDQTIYTWRGAS 267

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            +      +                  L  +   +      + ++   +  +  +     
Sbjct: 268 VRYLLDFDA----------------RHLGTRTIMMMENYRSTPQILAAANSLIDANETRV 311

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALIT 393
             D+                   V     +   +EA  IA  +    +     K  A++ 
Sbjct: 312 KKDLLPVRAPGGP----------VRCFHGETAEDEARWIAAEIEKLREAGAPYKSCAVLY 361

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
               L R ++    +  I   I AG+            + L  +    D ++   +V  P
Sbjct: 362 RAHYLTRSLEAAFLKEKIPYTIYAGVQFYDRAEIKDALAYLRLVAYR-DDLSFRRVVNAP 420

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
               G                    ++       L + + D I                 
Sbjct: 421 RRNMGARRMAFLE--------EQAASRGCSLWDALTATLDDEI----------------- 455

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                               L+   +       + ++S     +            ++L 
Sbjct: 456 ---------FKGTRAAAFVSLIERFSAAPVLPVSEALSGLLDESGYEAMLRTDGAQQRLD 506

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
           NL   ++               +    +A  + D             + E + T+  +  
Sbjct: 507 NLAELKQAVHEYETTCGEESGVADYLRHAALFTD-----------GDRAESADTVRFMTV 555

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L F  + L G+NEGV+              +    L+  E+    A      A  
Sbjct: 556 HAAKGLEFSRVFLCGMNEGVF------------PTRRTRTLQAMEEERRLAFVAMTRARD 603

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
              L        +  P   SR++  +    G   +    + G       R  +   +   
Sbjct: 604 ALCLTEADGRTLDGSPRYPSRFILDIDQ--GLLQYVAPPRPGLIEEARDRIAESERQLRR 661

Query: 754 YKRPKPFPPLEAQPRTY 770
             R +  PP  A     
Sbjct: 662 DSRIEALPPGTAVTHPV 678


>gi|19704485|ref|NP_604047.1| hypothetical protein FN1150 [Fusobacterium nucleatum subsp. nucleatum
            ATCC 25586]
 gi|19714757|gb|AAL95346.1| unknown [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 903

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/396 (12%), Positives = 117/396 (29%), Gaps = 57/396 (14%)

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             N   +   +  L LKT E  I    + F     + + I   S+ + +     S ++   
Sbjct: 513  NNNLFTEQQKIKLGLKTNEDEILIQKYRFFQNLLSLNKIDIYSMVDKDNNIDFSAFVYEF 572

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP--------FPPLEAQPRTYS 771
            +       +  L+        + + +    K  ++ + +             +       
Sbjct: 573  INK-----YSALENNTDNLKQYFKSIYSKEKTDNFFKDETFFRAYSKDKSDFKDNILKIG 627

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHF--KKDPDRTDRGTLFHNIITELIKKRINKNTP 829
              +  +L  +    +  +I  ++                G + H  + E+ ++       
Sbjct: 628  AYDYIELKKNETFFFLDKICGIESSDEIVADIGISAKVLGNILHKTLEEIFRENWKNILQ 687

Query: 830  EINHLMK--QIIDSHFEKENLPPH----------IDIIWRHLFHKISHSF--LEHEEKIQ 875
               +L+    II+ + ++                I+ +           F  + +EE   
Sbjct: 688  SSENLLISTDIIEKYLKRNIWKEELKIEIFMKNYINEVLTPRLVSNIEKFFKVLYEELKG 747

Query: 876  SSIEKIFVNIPAK------MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
              I +I     +K      +  + I + L G AD +         I D+KTG    K+  
Sbjct: 748  EKILRIEAEKKSKTQNKAYLKYDEIEVFLNGRADLLIETS-KARYIVDFKTGG--YKKE- 803

Query: 930  QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
                  QL   A                    +       + +      +K+  D+L EK
Sbjct: 804  ------QLEFYAIMFY--GSDNSLPVYSTAYNFW-----DEQEAKNFKFEKHLIDKLPEK 850

Query: 990  SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
                  E++      +     ++   + +  +S+YD
Sbjct: 851  -DSQFKELLIEFFKNK----YYVLPKKSALKESDYD 881


>gi|119775036|ref|YP_927776.1| exodeoxyribonuclease V subunit beta [Shewanella amazonensis SB2B]
 gi|119767536|gb|ABM00107.1| exodeoxyribonuclease V, beta subunit [Shewanella amazonensis SB2B]
          Length = 1224

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 102/945 (10%), Positives = 214/945 (22%), Gaps = 143/945 (15%)

Query: 165  KWEDLHALKNEKYGMWWLLAA--DFL----KIASKYWTERLVELNASSPVGYQIALMRAE 218
              E L  L      +         FL          +     E N  +P      L +A 
Sbjct: 300  GPETLSLLVQIDELLHAQENLMPAFLVLAKNEIQARFDGLKAERNLMAPDDLLKHLAKAL 359

Query: 219  ------------------------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH-P 253
                                        +       +I     + P    + S +    P
Sbjct: 360  GVQGSGSGSGFEPASEIDREIALRLSSEVASRFPMALIDEFQDTDPLQFAIFSALYRQQP 419

Query: 254  NGAIVLPGLDCHIPTAIWNTIT--EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                +L   D       +             ++   YS    Y  +  +         V+
Sbjct: 420  RAQGLLMIGDPKQAIYAFRGGDIHTYLGARRTAAAHYSLGTNYRSSSAMVQAVNTVFSVR 479

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                +S+E+    +  S S       D +            +     +    A     E 
Sbjct: 480  ERVFLSDEIPFEPVAASDSGAKTLLIDGKTQGPALQIALLGEDPDKGLNKQTARALMAED 539

Query: 372  ISIAIALRMSLDENKKKSALITADRNLARRVKLEL--TRFGINIDISAGIPLSTTLHSSI 429
             +  I   + L    + + L    R L  +    L   R        A   L+     ++
Sbjct: 540  AAAHIGQLLCLATEGR-AVLADKQRPLLAKDIAVLVRDRNEAAFIKDA---LTRRNIGAV 595

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
              S  N              + H LA    P               +      + + ++ 
Sbjct: 596  FLSRDNVFATKEASE-----LLHVLAALAQPRDEKRLRAA------MATRLMGWSLSEIA 644

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
            +   D  A ++       W  R  ++    A++      + +  L   K           
Sbjct: 645  AFNQDEEARRQALECFERWHQRWQKQGVMPALMAFADDTKLLERLGGDKEADRRLTDFRH 704

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNL---WFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
            + +  +     L  +          L     +E  +        +++  +  K+  +E+ 
Sbjct: 705  LCELLEQAGASLDGISALLGWFEQALLDPGSDEAMQLRLESEQNLVQIVTIHKSKGLEYG 764

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
                  +                    L   LL  D  +     E +          L+R
Sbjct: 765  LCYIPFLSLARDSRGKPSPLLYHKDDRLVWDLLQTDEGVECYDAERLGEDLRLLYVALTR 824

Query: 667  VMQS-DLNLKTAEKYIGQ--------AAHDFEM-----------ANGTRHLIYTRSLREN 706
             +    L L    + +           A  F +                  + + +    
Sbjct: 825  PVYGCRLGLANHSRMLKAGISSEVYKTALGFLLGIDSKDCDINVLRQAAERVSSHAHGSE 884

Query: 707  --NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
               +  I    L  L             ++     + + ++   +            P +
Sbjct: 885  IIGVVDIIQHDLTVLESAQHESTEPPSPRKPNRIGEESWRVGSYSALIAQGAGHTEHPGD 944

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---------GTLFHNI 815
                    +          +     +   D      +D     R         G+  H +
Sbjct: 945  IARTHEETTAAAIPGAGDESFSVLELPLPDEPEPASQDTGALSRFSFPRGANAGSFMHQV 1004

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF----HKISHSFLEHE 871
            +  +               + + +            ID  W+ +       +  + L+ E
Sbjct: 1005 LELI-----------RFDAVAETLPEVLPDAMAHFGIDTQWQPVLDTWYQDLMGAPLQDE 1053

Query: 872  EKIQS--SIEKIFVNIPAKMAIESIGIH-------------------------LTGFADR 904
            +   +   +    + +  +  +    +                          L GF D 
Sbjct: 1054 KGQFALGDLSPAQLLVEMEFYLPVSRLKPGALGDLLALYGYRSDFGFDTLNGMLKGFID- 1112

Query: 905  IDLLKSGFVDITDYKTGD-----------NPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
            +     G   I DYK+                        D Q  L   AL     S++ 
Sbjct: 1113 LCFSHDGRFYIADYKSNHLGDTLDHYHRDAMHTAIQDHHYDLQYLLYTLALHRLLRSRLA 1172

Query: 954  C----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
                 + V   FY+ L+        T          L  ++L  L
Sbjct: 1173 QYDYDKDVGGCFYLFLRGMSASSPGTGVYFDKPPKLLI-QALDAL 1216


>gi|303247976|ref|ZP_07334243.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
 gi|302490700|gb|EFL50603.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
          Length = 1070

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/432 (10%), Positives = 99/432 (22%), Gaps = 75/432 (17%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TL+   R           +     T+RA  ELR       G              + E+
Sbjct: 502 HTLLAKIRALLDTGAPPGDILAVTFTRRAAGELRERLARDAG--------------MAED 547

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
             T     +  L     +    L LA        +   + +D       ++    +    
Sbjct: 548 AATEASQDAPALPWA--DTLHALALAAWTASGGQEPVLLSEDASRRLFATVNPELSG--- 602

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
                A +           E L  L               L + +  +  +  + N    
Sbjct: 603 -----ARLRAAWRELSLARERLTPLPPADTAG--------LGLYAARYARQKSDWNLLDF 649

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                  +        + T   +++       P    +++ +    + A +    D    
Sbjct: 650 TDLLEFWLEKLVAGSEQPTCAHVLVDEVQDLTPLQLAVIAALVG-RDRASLFAIGDPDQS 708

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +                                 ++ E +    ++       +   
Sbjct: 709 IYGFRGAAP---------------------------GVRAELLAAWPDLEVAALAENYRS 741

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--------- 378
           ++  L            L +++ +     S++ L EA     EA  +   +         
Sbjct: 742 TQPVLNLAAGLFPGRAPLVSRLSSETPVASEIQLFEAPTAAGEAGWMGERIQALLGGTSL 801

Query: 379 -----RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT-S 432
                  +        A++     L   ++  L RFGI                 +L  +
Sbjct: 802 TLARDLSAETLAPGDLAVLVRFSGLIGPIRKSLERFGIPCAAPEADAFWNEPRVRLLLAA 861

Query: 433 LLNAIFKLNDFM 444
               +       
Sbjct: 862 AGRLMGLPAPAD 873


>gi|120603850|ref|YP_968250.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
 gi|120564079|gb|ABM29823.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
          Length = 719

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 72/747 (9%), Positives = 181/747 (24%), Gaps = 140/747 (18%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +S+ +   T++A  E+      + G        ++ +       F   LL  Y+      
Sbjct: 52  SSILLLTFTRKAANEMLQRASRLLGYG------VQGIAGGTFHAFAYSLLRQYHPARLEG 105

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
              R L +                        S P +        + +  ++     +E 
Sbjct: 106 ---RDLTIMDGADSVAAIQHCKDALGIARGDKSFPKT--------QTVLSLLSKSRNKEL 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             +++   +     +     AD +    + + E   E            + R   E    
Sbjct: 155 PLDEVLRREAYHLLVH----ADGVSRIGEAYAEYRAEHGLLDYDDLLFEVERLLRERPDL 210

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I++     +    ARL+  +A    G  V+   D       +     ++ 
Sbjct: 211 LAHLRDRYRYIMVDEYQDTNLVQARLVQLLAG--EGGNVMAVGDDAQSIYAFRGANVQNI 268

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                       PQ+     +  L+      + + +++N +   +    +  L     D 
Sbjct: 269 LSF---------PQFFPGTRIIKLEENYRSTQPVLDLTNAILAEAPQAYRKHLYTSREDG 319

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNL 398
               ++                    ++  +A  +   +   L      + A++      
Sbjct: 320 VLPQVVRPL-----------------SDLTQASIVVSRVSELLRTYPPHEIAVLFRAGFH 362

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +  V+++L + GI      G+  S   H   + +    +    D  A   +         
Sbjct: 363 SYHVEVQLNKLGIRFRKYGGVRYSEAAHVKDVMAYARLVLNPLDLPAFQRVA-------- 414

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                                                ++                + D  
Sbjct: 415 ------------------------------------ALSRGVGPKTTLRLYEVARQGDAA 438

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                     Q    L      +  T    ++ +               +         E
Sbjct: 439 ATAHACARYPQLRADLELLDRLRKRTPAPSTLLEEVIEHYQPRLEAAYPDDWPRRQQGLE 498

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
           +  +  S+                   +D+    +  E    + E   ++ +     ++ 
Sbjct: 499 QLVQIASAYRD----------------LDLFISDLSLEDPGTEEEDRDSVVLSTIHSAKG 542

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L +  +I+  L E                  S   +  A+ +  +    +      R  +
Sbjct: 543 LEWSAVIILDLVE--------------DRFPSRHAVTRADDFEEERRLMYVACTRARERL 588

Query: 699 -------YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
                    +     N P   S +++ L      + +      G    D +R +      
Sbjct: 589 MLFVPSSLYQRGEGGNQPAAPSPFVRELPAAL-YEEWYESYTGGLQRRDTSRPVARPAVA 647

Query: 752 P---HYKRPKPFPPLEAQPRTYSFSEI 775
                  RP+  P           +++
Sbjct: 648 STFGCAPRPESAPVPGGPSPVAGAAKL 674


>gi|115379646|ref|ZP_01466729.1| hypothetical protein STIAU_7080 [Stigmatella aurantiaca DW4/3-1]
 gi|115363356|gb|EAU62508.1| hypothetical protein STIAU_7080 [Stigmatella aurantiaca DW4/3-1]
          Length = 355

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 72/222 (32%), Gaps = 26/222 (11%)

Query: 805  RTDRGTLFHNIITELIKKRINK--NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                G   H ++  L+++ I+             Q+    +    L     +        
Sbjct: 3    PLSFGKALHAVLERLLQEVIDTEYAGALSEERALQLYREAWAASGLSG---LDLFQQGLG 59

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG- 921
            I   F+  ++    S + + V    ++ +      + GF DR+D +    + + DYK+  
Sbjct: 60   ILQDFVR-QQGRVDSRDILAVEKEFRLPV--GPFTVLGFIDRVDWVDEETIAVIDYKSNH 116

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
                +E        QLSL A A +          K   L    L+   + +         
Sbjct: 117  QLFTREELDS--SLQLSLYALAARR----MWPWAKKVRLSMWMLRHGVRQETTRT----- 165

Query: 982  SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023
              +E  + +L  +  +   ++  E  F + L  +    +  +
Sbjct: 166  --EEQLDAALAYVETLGQQMEKAE-SFPARLNPN---CVYCD 201


>gi|330858387|ref|YP_004414741.1| Gp37 [Propionibacterium phage PAS50]
 gi|260066598|gb|ACX30876.1| Gp37 [Propionibacterium phage PAS50]
          Length = 343

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 49/223 (21%), Gaps = 46/223 (20%)

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
             +P     P   S+S + Q                     +      T  G+  H I  
Sbjct: 4   AQYPSTINHPGHISYSSLSQWAECGEKWRLSHGYHAQHHTWY-----ATIAGSAIHRITE 58

Query: 818 E----LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI------------------- 854
           +    L         P+     K + D+                                
Sbjct: 59  QYDLHLYSPAEYLALPDKLASFKNVFDTQVA-LAESEGTRHKPSGRICKNMCESGGPHKK 117

Query: 855 --IWRHLF-HKISHSFLEHEEKIQSSIEKI-----FVNIPAKMAIESIGIHLTGFADRID 906
              W  ++       +          I  +      +  P +  ++     + G+ DRI 
Sbjct: 118 DYNWWMMYGPTFVDRWKTWRRNHPEYITAVIDGKPGIEYPVETTLDDGT-QIVGYIDRIF 176

Query: 907 LLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
                G   I D KTG  P           QL      L    
Sbjct: 177 TDTDTGETFILDLKTGRLPAD-------SMQLHTYRYMLNQHG 212


>gi|15678538|ref|NP_275653.1| hypothetical protein MTH510 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2621582|gb|AAB85016.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 473

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 56/181 (30%), Gaps = 20/181 (11%)

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
           +    SF+E+   +  P+          D      +       G   H  +  + ++ + 
Sbjct: 8   EIFRISFTELNTYLTCPFRYMLLYEYGFDVPSTRDQ-----LYGIAVHECLRRINRRLM- 61

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
           +     +  ++++         + P     +     +              + E +    
Sbjct: 62  RGEAVTDDYLQELASHALRDIEMSPDGFRAFISKLKRYLEEI------RGRASEIVSAEK 115

Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK--TGDNPKKETAQKLIDPQLSLEAAA 943
           P  +  +  G  +TG  D I   + G +++ D+K  +G        +     QL +   A
Sbjct: 116 PFSIMKD--GFMITGQTDLIIRNREGGLELVDFKSMSGSGIHARDIE----LQLGVYRHA 169

Query: 944 L 944
           L
Sbjct: 170 L 170


>gi|51473636|ref|YP_067393.1| DNA helicase II [Rickettsia typhi str. Wilmington]
 gi|81390099|sp|Q68WT1|UVRD_RICTY RecName: Full=DNA helicase II
 gi|51459948|gb|AAU03911.1| DNA helicase II [Rickettsia typhi str. Wilmington]
          Length = 658

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/307 (10%), Positives = 77/307 (25%), Gaps = 42/307 (13%)

Query: 155 IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
           II   + +      L A       +     A       + + + L+  N        +  
Sbjct: 150 IISRWKDQGLLPSKLSA---SDTNLPLQRVAKL---IYEEYQKNLLISNVLDFGDLLLYN 203

Query: 215 MRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
                ++       +     I+I     +  A       +A+       +   D      
Sbjct: 204 NELFIKNPEILKYYQEKYRYILIDEYQDTNIAQYLWARMLASLYRNICCV--GDDDQSIY 261

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
            W      +      +   +T         +  L+        +   ++ +   +     
Sbjct: 262 GWRGAEVGNILRFEKDFAGAT---------IIKLEQNYRSTLPILAAASNVINNNKNRHS 312

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENK 386
             L  D                       + +I   +++EEA  IA     L      + 
Sbjct: 313 KTLWTD-----------------SASGEKIKIISCLSDKEEARYIACEIDKLVREERYHA 355

Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              A++       R  +       +   I  G+     +    + + +      ND +A+
Sbjct: 356 GNIAILVRAGFQTRSFEEAFINSAMPYKIIGGLRFYERMEIRDVLAYIRISLNQNDNLAL 415

Query: 447 ATLVKHP 453
             ++  P
Sbjct: 416 ERIINVP 422


>gi|153006848|ref|YP_001381173.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152030421|gb|ABS28189.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 1083

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/817 (7%), Positives = 163/817 (19%), Gaps = 69/817 (8%)

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSP----VGYQIALMRAEAEHLMKGTKGP 229
            ++               A   +                   +  L R      ++     
Sbjct: 268  HDDVLGMQAQLFALAGEALGTFVAEKTAAGVVDFGDMLARAREVLERPAVREALRDRLDL 327

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            +++     + P    ++S +A     +I     D       +     +     +      
Sbjct: 328  VLVDEFQDTSPLQLAVVSALAGLARRSI--WVGDRKQAIFAFQGTDPELMTAATEAALGG 385

Query: 290  THPQYS-----------------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
              P                     A+ L       + V+ +    +    R     + + 
Sbjct: 386  RTPDILASSWRSRPDLVAMTSELFARALAPHGFPDDQVRIVAAKPDHPRLRDQGAFECWR 445

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALI 392
                   RN   ++   P+         L      RE   +   A+R +   + +  A++
Sbjct: 446  WMPEKVERNGKDVKASEPDALGAGVAELLSNPPLVRERGNAEVEAVRPA---SFRDVAIL 502

Query: 393  TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                   +++   L   GI   +S G  ++ T    +  + L  +    D +A   +   
Sbjct: 503  ARSNARCQQIAAALRARGIPAKVSLG-GVTLTPEGVLARAALALLADPRDGVAALQVAWL 561

Query: 453  PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
              A            +           K +    + +               +    +  
Sbjct: 562  GGAASS-DPDGWLSRRLLEIASWRATAKAAEGKGEHRPPAPLAFEDDGRVAGLRKAVAAA 620

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC--LQNVCLDEHR 570
                   A+ L          + ++           ++             Q        
Sbjct: 621  ERLSPAQALDLALRTAGVAELVRSWPEPAQRVANLEALRAEAAAYEQLCEAQRSAATMLG 680

Query: 571  KLPNLWFEEEGKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
             + +L   + G       +   E   + +  +  + ++    ++       +        
Sbjct: 681  LVAHLASLDAGDDAGKQAAPSSEDAVTVLTWHKAKGLEWPVVVLSHLDFSRERGVFEVAV 740

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                        +   +          +         +  ++    T      +    + 
Sbjct: 741  EPAPRFDFARPLEGRWVRYWPWPYGGMSKELALLDRALETAEARRATEADRRERLRLLYV 800

Query: 690  MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
                 R L+   +               R     G          G              
Sbjct: 801  GFTRPRDLLVLVA---------------RCTEKSGPATASLDLLVGAKGEPLLAAPFEDQ 845

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                    +       +  +                YA                +     
Sbjct: 846  AGAAIGVGQQEWRCRVRTPSGLPPATPAPARSAVQWYASAPRAERPRERLNPSAEPLAGT 905

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH---- 865
                 +     +  +  +  +       I       +       +       K       
Sbjct: 906  PRVVQVERLGGRHALAASPEQAGPTGDAIHAFLAADQGGTQEARLTMATRILKAFRVVGA 965

Query: 866  -----------SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL-TGFADRIDLLKSGFV 913
                       +     +         +   P +  +      L  G  D    L  G  
Sbjct: 966  VAPDTLLAASDALRTWLDARYPGAT-WYREWPVRARLGGPTPRLVVGDVDLFLELPDG-F 1023

Query: 914  DITDYKTGDNPKKETAQKL----IDPQLSLEAAALKA 946
             + D+K+     +    +       PQL   A  L  
Sbjct: 1024 VLVDHKS-FPGSERERDRRLVEEYAPQLGWYARVLAD 1059


>gi|222084834|ref|YP_002543363.1| ATP-dependent DNA helicase protein [Agrobacterium radiobacter K84]
 gi|221722282|gb|ACM25438.1| ATP-dependent DNA helicase protein [Agrobacterium radiobacter K84]
          Length = 689

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/543 (10%), Positives = 135/543 (24%), Gaps = 61/543 (11%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQEL--------RSEFIEITGKKSTILPIIKS 80
           TL     +  +       + +   ++RA  E+        R       G  +  L    +
Sbjct: 45  TLAHRVAHLIVKGADPRRILLMTFSRRAAAEMGRRVERICREVLGANAGIMADALAWTGT 104

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
              +       D      L+P  +   R    A L+ + R+ L     +    +  +   
Sbjct: 105 FHGIGARLLR-DYAEQIGLDPAFTIHDREDS-ADLMNLIRHDLGFSKLESRFPTKGTCLA 162

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                             I +     E         +  W       L+     + E   
Sbjct: 163 ------------------IYSRAVNSEAPLEEMLRDFFPWCATWDKQLRDLFAAYVEAKQ 204

Query: 201 ELNASSPVGYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             N        +       E L+          +++     +    + ++  +     G 
Sbjct: 205 AQNVLDYDDLLLYWAHMLHEPLIAEDIGGRFDHVLVDEYQDTNRLQSSILLALKPDGQGL 264

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V+   D       +   T ++     +  T    P  ++  L       +  +     V
Sbjct: 265 TVV--GDDAQSIYSFRAATVRNILDFPTAFT----PSANIVTLDRNYRSTQPILAAANAV 318

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
            +    R     ++                              L+   +E ++A  IA 
Sbjct: 319 IDLASERFTKNLRTERQSAERP---------------------RLVTVRDEADQARYIAD 357

Query: 377 ALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +  + +     K+ A++    + +  +++ELTR  I      G+    + H   + + L
Sbjct: 358 QVLENRESGAKLKQQAVLFRTSSHSGPLEIELTRRNIPFVKFGGLKFLDSAHVKDMLAAL 417

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                  D +A   L++          + +               +        +     
Sbjct: 418 RFAQNPRDRVAGFRLMQLLPGVGPSTAQRVLDHIGEEASPMAALAEFPAPPRSGEDWTGF 477

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               Q+  +    W + +    +     L        T L      +    G  S   + 
Sbjct: 478 VATMQELKSGKAGWPAEIGLVRQWYEPHLERAHEDASTRLADLIQLEQIAGGYGSRERFL 537

Query: 555 KLT 557
              
Sbjct: 538 TEL 540


>gi|210617937|ref|ZP_03291823.1| hypothetical protein CLONEX_04055 [Clostridium nexile DSM 1787]
 gi|210149076|gb|EEA80085.1| hypothetical protein CLONEX_04055 [Clostridium nexile DSM 1787]
          Length = 1217

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 82/814 (10%), Positives = 197/814 (24%), Gaps = 99/814 (12%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN----LADIIDIIETEEKKW 166
            ELA  +   R ++   +  +  +     P      +  AK+    L  +++     +   
Sbjct: 293  ELAAYVKGVREEVKKTVASVVEQYFFDAPEELYQDMLSAKSNMEVLVQLVNDFA--DTFA 350

Query: 167  EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
            E         +G     A   L          L E     P           AE      
Sbjct: 351  EKKTGKNMIDFGDMEQFALRILT---------LEEGGKLVPSKAAKEYQERFAE------ 395

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI-VLPGLDCHIPTAIWNTITEKSTNITSSN 285
               ++I     S      ++++V+    G+  +    D       +     +      + 
Sbjct: 396  ---VMIDEYQDSNLIQEAILTSVSKVSKGSYNIFMVGDVKQSIYRFRLSRPELFMEKFNT 452

Query: 286  TTYSTHPQYS--LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
             +     +    L K         +    +           +           +      
Sbjct: 453  YSLEESDKQRIDLHKNFRSRREVLDSTNFIFEQVMTKGLGGIAYDDKAALYVGAAYEEQA 512

Query: 344  ILENK--IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--------------KK 387
              E +  + +      D   +E  N   EA ++A  ++  +  +                
Sbjct: 513  GNETEVILVDTDFEDEDDQKMEETNRELEARAVARRIKELVGHHMVLDKETGEYRTARYS 572

Query: 388  KSALITADRNLA-RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
               ++T             L R GI     +      T     +   L  +      +  
Sbjct: 573  DIVILTRSLKGWTDVFTNILNREGIPAYSGSKEGYFETREIRTILDYLRILDNPRQDIPF 632

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN---NT 503
            A ++           + L+  +   E          Y        + +RI          
Sbjct: 633  AAVLTS--CFGKLTSEELANIQCEGEGKTFYERTLFYLENGSDENLKERITDLLRKYERF 690

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                  + +     ++             P    +          ++S  +         
Sbjct: 691  RRKVPYTAIHALLWDIIEETGYGDYVASLPSGEQRKANLEMLVEKAVSFESTSYKGLFHF 750

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
            +   E     ++ + E      S+  +  +T   +  +  + ++     + G + +   +
Sbjct: 751  IRYIEQLHKYDVDYGEA-----SVLDEQADTVRLMSIHKSKGLEFPIVFVSGMSKRFNTQ 805

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                  ++                G++     + T     L R++Q ++     E    +
Sbjct: 806  DIKGSIVIHPE----------FGVGIDAVDVERRTKAPTLLKRMIQREV---LMENAGEE 852

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                +      +  +       N    I S   + L     T+   +   +   Y DW  
Sbjct: 853  LRVLYVALTRAKEKLIMTGTISNLEQKIRS--YEGLRSHEETELTFSRLTKANSYFDWV- 909

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                    P   R   F P+       +         D      +  +         ++ 
Sbjct: 910  -------LPALYRHASFAPILETYNIGAPFMNPLYDRDVPIRVYKMGIGEIVAGEVAEEL 962

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
                   L HN            +T   +  MK+ ++  F  +          R    K+
Sbjct: 963  SGQYTKELLHNW----------DDTRTYDEQMKEQLEIQFGYQYP------YERER--KL 1004

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
                   E K ++ +E        ++  +   + 
Sbjct: 1005 KQKMTVSELKKRAYLE----EEAGELVFDEADVV 1034



 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 61/161 (37%), Gaps = 23/161 (14%)

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
            +++     RG+ +H ++       ++ +       +K++I+       L   +    R  
Sbjct: 1044 EEELTGASRGSAYHRLLE-----LLDFSKKYDEVTLKELIEEQKRSGKLSEEMCTSIR-- 1096

Query: 860  FHKISHSFLEH---EEKIQSSIE-KIFVNIPAKMAIES----------IGIHLTGFADRI 905
              K    FL     E   ++++   ++   P  + I++            + + G  D +
Sbjct: 1097 -EKDILRFLNTPVGERMHRAAVRGTLWAEQPFVLGIDADELYKGESLEETVLVQGIID-V 1154

Query: 906  DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
               + G + + DYKT    K+E  ++    QL   A AL+ 
Sbjct: 1155 WFEEDGELVVLDYKTDRVFKEEILREKYHTQLDYYARALEQ 1195


>gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1]
 gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1]
          Length = 849

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/442 (12%), Positives = 119/442 (26%), Gaps = 52/442 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103
            +     T +A  EL    +++T   +       +K+      +    +      ++   
Sbjct: 55  EILCLTFTNKACHELAERLLKVTNGLAKEVF---VKTFHSFCFQLIKEEAKNFGKISRDF 111

Query: 104 SNIQRLL--ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
           S +       L R ++     + D+      E  L   + P       K +         
Sbjct: 112 SVMDEEDGKFLVRQLMKDDYVIADLAYQYLQELKLYRLMIPKAYRDDYKRVVASFHQ--- 168

Query: 162 EEKKWEDLHALKNEKYGMWWLL-AADFLK----IASKYWTERLVELNASSP----VGYQI 212
                E    L+              FL        + +   L+E +        V    
Sbjct: 169 ----SEKAQKLQYSNRRSDAGAYTLGFLAQYGCWLYETYQTYLLENHLVDFNDLIVYASE 224

Query: 213 ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
            L   E     +G    +++     +     +L+  +A     ++     D +     W 
Sbjct: 225 LLEDEEILERWRGRFKVVMVDEVQDTSQFEYQLIEKLAKGKQFSVF---GDFNQTIYEWR 281

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN---EMYGRSMVISK 329
               +        T           +L   L +    +KRL  +S    E   ++ +I+ 
Sbjct: 282 DSNPELILSQIMTTFNP-------KRL--ELSLNYRSLKRLVQMSANYLENAKKARLINP 332

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
              P                             EA  ++EE   I   L+    ++   +
Sbjct: 333 RLSPRVIEAANEEVGGRPV------------FYEAQTQQEEMDFIIDHLKHYRLDDLANT 380

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            ++T       +V   L   GI   +   + L        L + +       D +++  L
Sbjct: 381 VILTRTNKQNIQVSNFLRNVGIPCYLIEDLSLFRRKVVKDLLAFVKFQLNPFDHLSLERL 440

Query: 450 VKHPLAKFGFPEKYLSRAKNAL 471
           +  PL       +  ++     
Sbjct: 441 L--PLICPEVSPELFNQTYRQR 460


>gi|307078568|ref|ZP_07487738.1| putative exodeoxyribonuclease V, gamma subunit [Mycobacterium
           tuberculosis SUMu011]
 gi|308363484|gb|EFP52335.1| putative exodeoxyribonuclease V, gamma subunit [Mycobacterium
           tuberculosis SUMu011]
          Length = 594

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 60/579 (10%), Positives = 130/579 (22%), Gaps = 44/579 (7%)

Query: 39  LNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS-LGDVVEEKFTADLLLSY 97
             P   A   + V  +   + L      + G        + + +     +   A++  + 
Sbjct: 25  PQPDPFAQELVLVAARGVERWLSQRLSLVLGCGPGRADGVCAGIAFRNPQSLIAEITGTL 84

Query: 98  NLNPPVSNIQRLLEL----ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
           + +P          L    A L   W   L   +         +          +A+ LA
Sbjct: 85  DDDPWSPEALAWPLLAVIDASLDEPWCRTLASHLGHFATTDAEAELRRGRR-YSVARRLA 143

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            +      +         L               L      W   +  + A  P      
Sbjct: 144 GLFASYARQR------PGLLAAWLDGDLGELPGDLAWQPPLWRALVTTVGADPPHVRHDK 197

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            +    +         + + G T       +L+  +A H +  + LP         +W  
Sbjct: 198 TIARLRDGPADLPA-RLSLFGHTRLACTDVQLLDALAVHHDLHLWLPHP----SDELWRA 252

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK-REDVKRLGNVSNEMYGRSMVISKSFL 332
           +               T  + +   LL+ L    RE  + L                  L
Sbjct: 253 LAGFQGADGLLPRRQDTSRRAAQHPLLETLGRDVRELQRALPAARATDEFLGATTKPDTL 312

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKK 388
                     +       ++      V +        +   +   L   L++      + 
Sbjct: 313 LGWLQADIAGNAPRPAGRSLSDADRSVQVHACHGPARQIDVLREVLLGLLEDDPTLQPRD 372

Query: 389 SALITADRNLARRVKLE----------LTRFGINIDISAGIPLSTT-LHSSILTSLLNAI 437
             ++  D +    + +                      A   L+ T    S+   LL   
Sbjct: 373 IVVMCPDIDTYAPLIVAGFGLGEVAGDCHPAHRLRVRLADRALTQTNPLLSVAAELLTIA 432

Query: 438 FKLNDFMAIATLVKHPLAK----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                   +  L +    +    F   +            +    +        L ++V 
Sbjct: 433 ETRATASQLLNLAQAAPVRAKFGFADDDLDTITTWVRESNIRWGFDPTHRRRYGLDTVVH 492

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS-------TCG 546
           +      +        S  S+   + A+ L D     +                     G
Sbjct: 493 NTWRFGLDRILTGVAMSEDSQAWLDTALPLDDVGSNRVELAGRLAEFVERLHHVVGGLSG 552

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
              +  W     T +  +              E  + L 
Sbjct: 553 ARPLVAWLDALATGIDLLTACNDGWQRAQVQREFAEHLL 591


>gi|283795947|ref|ZP_06345100.1| UvrD/REP helicase [Clostridium sp. M62/1]
 gi|291076588|gb|EFE13952.1| UvrD/REP helicase [Clostridium sp. M62/1]
          Length = 1133

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/440 (12%), Positives = 104/440 (23%), Gaps = 56/440 (12%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
           P +     +   +     V   R         + +T    TKRA +ELR        +  
Sbjct: 534 PGTGKTGTLTARIRCLLEVRRVRP--------SEITAVTFTKRAAEELRERLKREMPRHR 585

Query: 73  TILPIIK--SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
           TI   I+  +   +         +           +   LEL  L     + L +    +
Sbjct: 586 TIS-RIQTGTFHSLCYSMLRQTGVEF--------ELADSLELTEL---ASDVLKEKKLKI 633

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            P   L    +     W   + A   +  + E         L  EK            + 
Sbjct: 634 RPAEFLRGVSAEKCRRWETGDAACGKEACKEE-------KNLLPEKQ-----------EE 675

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-----TKGPIIIAGSTGSIPATARL 245
           A + +  RL E         QI  +R   E              +++       P   RL
Sbjct: 676 AFELYQRRLREAGLYDFDDLQIEALRLLEEDREAAAGLCSRFRYLLVDEFQDISPIQYRL 735

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           +        G  +    D       +     +      +     T            L I
Sbjct: 736 IRNWNQ--EGRELFVIGDPDQSIYGFRGSDPECFRRLLAEFP-ETCTVRLEQNYRSSLQI 792

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                  + N             +                      I +    + +++A 
Sbjct: 793 TEGACAMISNNPGGERRLISAAGEGLPIRIAKAAGRLSEGIFTAREINRMIGGIDMLDAQ 852

Query: 366 NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
                      A++     +    A++      A  ++  L + GI   ++         
Sbjct: 853 ERE--------AVQEKKVRSFSDIAVLCRTHRQAEEIEECLRKEGIPCIVTGRGEFLEAE 904

Query: 426 HSSILTSLLNAIFKLNDFMA 445
                T    ++   +    
Sbjct: 905 TVREATGFFRSLLHDSSDTE 924


>gi|313157484|gb|EFR56903.1| UvrD/REP helicase [Alistipes sp. HGB5]
          Length = 1047

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 81/858 (9%), Positives = 220/858 (25%), Gaps = 124/858 (14%)

Query: 145  AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
            A  LA  L  ++  +   +    ++ +            +   L        +   E N 
Sbjct: 285  AAPLAARLQPLLREMC--DLYDANVRSWNTCDLLRENYRSFALLSDLYAKVQQLCDEQNM 342

Query: 205  SSPVGYQIALMRAEAEHLMK-------GTKGPIIIAGSTGSIPATA----RLMSTVANHP 253
                  +  L      +                +I     +          L+    +  
Sbjct: 343  MLLSETKYILSEFIGHNDAPFIYEKVGNRFEHFMIDEFQDTSVKEWENFLPLLQNAMSQS 402

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
                VL   D       W                  +  Q  L      ++I RE+ + L
Sbjct: 403  EATSVLIVGDIKQSIYRWRGGD---------WKILHSQAQAQLDPASTEVEILRENYRSL 453

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
              V            +         +   +   N+  +       +           A +
Sbjct: 454  PAVV-----------EFNNEIIGRVVETDNRALNETLDEAAAKGGINPAA-------AAA 495

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            +   LR +   + +               +       +++        +       +  +
Sbjct: 496  LHDTLRDAYRGHAQT------------PRRRSDRPGYVSVST-----FAEQPPV--VERI 536

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
               + K      I  LV+             ++    L     R     Y    +    L
Sbjct: 537  CEVLDKGFRPRDIMILVRG--------ATDGAKVAAELLDFKRRNTDPRYRFDVMTQEAL 588

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                   ++      +  L+ +D     +   ++ +          ++ +   ++ +   
Sbjct: 589  IVGNAPVSSFIAASLRLSLNPDDSLSRAVYNHYLGRGFD--RPLSDDERTFFRSIRLLSP 646

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
             +     +    L + ++            L ++  +II   S   A+   ++D   +  
Sbjct: 647  EEAFERIVMRHGLQDDKQQTAY--------LQAIHEQIIGFCSSKIADIALFLDWWEQQG 698

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK---------NTAKNPFL 664
               ++  +  ++ T+ I    +++ L    +++   +  + PK             +   
Sbjct: 699  QNRSLSVEESET-TVEITTIHKAKGLEKRVVLIPYCSWQLDPKSGGNVTNIVWAEAHGDA 757

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRWLQRLLVL 722
              V +  +  K +    G +A  +     +   ++            ++     Q+    
Sbjct: 758  EAVGRFPVKYKKSMAESGFSAEYYRELVYSHVDNVNLLYVALTRAAESLHVFIPQKGGKT 817

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
             G     ++   G   L  + +  YT  +   +               +      ++ + 
Sbjct: 818  VGGLLLQSILTDGDKALAGSAEGRYTVTETGERFEFGQFRGPVADGGKTSGAEHVVLENY 877

Query: 783  YAVYARRILKLDFIPHFKKD----PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
                A   L+L    +F+++        + G L H                +    ++  
Sbjct: 878  PTARADLRLRLPSQRYFEQEEEVELSPRNFGILMHKAFEN----------ADDEEQIRLA 927

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI---QSSIEKIFVNIPAKMAIESIG 895
            ++       L             ++    L H           E++       +      
Sbjct: 928  VERMQADGTLSAA----EAAALRRMIARALAHPAAREWFAGGWERVRNENEIIIP-GGSS 982

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955
                   DR+ +  +    + DYK G    +         Q+    A L+   +++ +  
Sbjct: 983  AR---RPDRVMIRGT-RAVVVDYKFGGREPER-----YRRQVREYLALLRQMGYTETE-- 1031

Query: 956  KVANLFYIRLKQKFKIDC 973
                L+Y++L +  K++ 
Sbjct: 1032 --GYLWYVKLGRIEKVEE 1047


>gi|325000776|ref|ZP_08121888.1| ATP-dependent DNA helicase [Pseudonocardia sp. P1]
          Length = 259

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 57/248 (22%), Gaps = 46/248 (18%)

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            G+L H ++                    +      +                  +  +F 
Sbjct: 3    GSLVHALVQARAAGADAAELESAL----RSAWRRLDAGAPWFGRR--ELSRVRDMLTAFD 56

Query: 869  EH-EEKIQSSIEKIFVNIPAKMAIE----------------------------------S 893
            +         +E + V  P ++ +E                                  +
Sbjct: 57   DWVRRSRAEGLELVAVEQPVQLDLEGDPPPEGPGPSGDDNPDLLAPEPADGPGGGAARSA 116

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI- 952
              + L G  DR++    G   + D KTG              QL++   A   G+FS++ 
Sbjct: 117  RRVRLRGRVDRLERDDQGRPVVIDVKTGKTATSG-RATAEHHQLAVYQLAASLGAFSELV 175

Query: 953  -DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011
                       + L  +          +     E        L+       +    F++ 
Sbjct: 176  GAGTGPGGGRLLFLADRKASGEAKEPAQSPLQPEEMGHWRDVLMTCAE--DSAGAVFVAR 233

Query: 1012 LRLSEKSN 1019
                    
Sbjct: 234  AGPDCDRC 241


>gi|261416174|ref|YP_003249857.1| hypothetical protein Fisuc_1782 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372630|gb|ACX75375.1| hypothetical protein Fisuc_1782 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325667|gb|ADL24868.1| conserved domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 895

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 96/289 (33%), Gaps = 26/289 (8%)

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY---TTKQP 752
            L      ++     +    L RL      +         Q     T  ++      +  
Sbjct: 511 KLTLVTVKKDGTKDVVKDPILIRLEKNMDKELTKEPLSLKQTLDVSTETIEQFNNRHQDE 570

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                     L + P+  SFS I  LI++P+     +I+KL            T +GT+ 
Sbjct: 571 DGTIHFERKDLVSFPQKESFSSISTLIDNPFDYVFNKIIKLRKSGSAAMSAVFTTKGTVA 630

Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP------PHIDIIWRHLFHKISHS 866
           H II +L       +   I + +    D+ F++  L          ++  +++F K    
Sbjct: 631 HAIIEKLFAPEKGGSPAAIRNRIDSDFDTVFDETILECGGILLQPENLSEKNVFKKDMKK 690

Query: 867 FLEHE--EKIQSSIEKIFVNIPAK-MAIES---IGIHLTGFADRIDLLKSGFVDITDYKT 920
            +        ++++  +      + + +       I   G  D +    +  + I D+K 
Sbjct: 691 CVTRLCNLIDKNNLNVVACEKNYENVELPEFSKQKISFNGSIDMVLENNAAEIVIFDFK- 749

Query: 921 GDNPKK----ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL 965
             +PKK    +  +     QL+L       G   +   +KV    YI L
Sbjct: 750 -YSPKKEKYEKWIKNNRSLQLALY-----KGLVEKTSDKKVNAKAYILL 792


>gi|322831718|ref|YP_004211745.1| exodeoxyribonuclease V, subunit beta [Rahnella sp. Y9602]
 gi|321166919|gb|ADW72618.1| exodeoxyribonuclease V, beta subunit [Rahnella sp. Y9602]
          Length = 1227

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 92/900 (10%), Positives = 196/900 (21%), Gaps = 133/900 (14%)

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM----RAEAEHLMKGTKGP 229
             +        A  ++K       ++  ++  +  +    A +     A    +++     
Sbjct: 333  PDARSGLLQHACRWIKNRFDLEQQKRAQMGFNDLLTRLDAALSSDNGARLAEIIRTQFPV 392

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +I     + P   R+   V      A    ++   D       +      +      +T
Sbjct: 393  AMIDEFQDTDPLQYRIFDAVYRVAENAPEQGLILIGDPKQAIYAFRGADIYTYLRARRDT 452

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                +   +  +    +      V  L    N   G    + +         +       
Sbjct: 453  GGRHYTLATNFRSTRAMVASVNQVFEL--AENRKSGEGAFLFRRGAENQVPFLPVEAKGR 510

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406
                 I    +    +     + E +     ++M  D    +   +              
Sbjct: 511  ADTLVIDDAEAAALTLWYPENQAEVLPKNQYVQMMADGCATEIVRLLRLGQQ-------- 562

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
                     SAG  L                 K      IA LV               R
Sbjct: 563  --------GSAGFGLPGETL------------KPVMPGDIAVLVNTGREATAVRVALSKR 602

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
               ++ L        S    +L+  +    A + +        +       E    L   
Sbjct: 603  GVRSVYLSDKESIFESAQAGELQYWLAACAAPENDRLLRAALATPSLNLSWEALDRLNQD 662

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
              +    +  ++  +        +    +L         L        L        L  
Sbjct: 663  ESEWERYVQQFQALRTCWRKQGILPMLRRLMWEFDVPRRLLGRGDERALTDLLHLSELLQ 722

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
              S  ++    +     E      +  D   ++ +   +  + ++   +S+ L +  + L
Sbjct: 723  QASVQLDGEHALIRYLAEQCQDEHQGGDARKLRLE-SDAELVKVVTVHKSKGLEYPLVFL 781

Query: 647  GGLNEGV----------WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
                             W     +           L     E+        +     +R+
Sbjct: 782  PFACAFRAVKKQDSPLKWHTAEGELEVALSATDEQLAQADRERLGEDLRKFYVAMTRSRY 841

Query: 697  LIYTRSLRENNIPTIASRWL----QRLLVLGGTDFFDNLKK---RGQCYLDWTRKLDYTT 749
             ++            AS +L      +           L+    R          +  + 
Sbjct: 842  ALWLGMAPLKEFEKSASGYLFHGGDAIDADALPASLQALETDTIRAWPLPVTDGAIYRSE 901

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR- 808
            +      P+P       PR +  S     I    +      L  +     +     +   
Sbjct: 902  QLLPELGPRPPLRTHKGPRWWVSSFSGLQIAPAGSYMVPETLNREPRGEIESAAQDSYLE 961

Query: 809  -------------GTLFHNIITELIKKRINKNTPEINHLMKQII-DSHFEKENLPPHIDI 854
                         G L       L             H + +   D  F      P    
Sbjct: 962  DQKVFVEDKEPVPGLLQPMTGENLYAFPRGPAPGNFLHGLLEWAGDEGFAALAKDPAKIA 1021

Query: 855  IWRHL-----------------FHKISHSFLEH---EEKIQSSIEKIFVNIPAKMAI--- 891
                                     +    L     E    + +    V +    ++   
Sbjct: 1022 DQVARRCNTRGWEKWIVPLSGWLTALLTQPLALPDGETFTLAELPPYQVEMEFWFSLTKV 1081

Query: 892  ------------------------ESIGIHLTGFADRIDLLKSGFVDITDYKTG------ 921
                                    E +   L GF D +     G   + DYK+       
Sbjct: 1082 STVRLDKLVQQYTLEGAERAPLLAEDLNGMLKGFIDLVFEH-DGRYYVLDYKSNWLGDDA 1140

Query: 922  -----DNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKID 972
                 +N  +   +   D Q SL   AL     S+I      R +    Y+ L+      
Sbjct: 1141 SGYDQENMTQSMREHRYDLQFSLYLFALHRLLKSRIPDYDYDRHIGGAVYLFLRGSHAPG 1200


>gi|108763229|ref|YP_630836.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622]
 gi|108467109|gb|ABF92294.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus DK
            1622]
          Length = 1220

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 94/845 (11%), Positives = 211/845 (24%), Gaps = 90/845 (10%)

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVG-----YQIALMRAEAEHLMKGTKGPIII 232
              + +   + L          L   N             +     E    ++   G +++
Sbjct: 324  APFEVTFRELLTRVETRHDTELSRRNVLDFTSLLVKSRDLLRAHPEFRRQVQERIGALLV 383

Query: 233  AGSTGSIPATARLMSTVANHPNG-------------------AIVLPGLDCHIPTAIWNT 273
                 +      L+  +A                        A +    D       +  
Sbjct: 384  DEFQDTNRLQLELVLLLAEKREDGPRELAPDADLVTALPLEPAFLCAVGDRKQSIYEFRG 443

Query: 274  ITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEMYGRSMVISKSFL 332
                  ++ +         +  L      +  +     +    V      R+    +   
Sbjct: 444  ADVSVFSVLAKKLVDEGGTRGFLQHNRRSVPGLLSFFNRTFAGVLVAADARAPRPFEVIY 503

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-------- 384
             P+  D+       ++ P +++   + A   AD    +A +IA  LR  L          
Sbjct: 504  VPEQDDLAAVRPSLSETPVVERLQLEEADTAADLRWLDADAIARRLRCLLAPGAPASVAR 563

Query: 385  ---------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                          A++          +  L R G+   +  G           L SLL 
Sbjct: 564  EDGEGLRPARGGDVAMLFRTFTHLEVYRQALIRHGVPHRVLRGRGFYGAQEVLDLASLLA 623

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             +    D +A A +++ PL        +L      L L + R       +   +      
Sbjct: 624  LLADAEDALAFAAVLRSPLVGLKDASLFLLAGDAPLSLSSPRLTDPEVLVSLSERERQRL 683

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                     +   + R+   +  +A L V    + +      +    +    L+++    
Sbjct: 684  ERFLAALPGLRRERDRMGVRELLVAALDVTGYREALAGSPYAEQASANVEKLLALASR-- 741

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                       DE      + F  E + L+       +      ++       +  +   
Sbjct: 742  ----------RDERGTGGCVAFSRELRMLAENNPTEAQADLLDASDPRAVQ--LLTIHSA 789

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
            + ++  +    ++       S   +F+     G++   W  ++  +   SR       LK
Sbjct: 790  KGLEWPVVVVPSMGGRRRGTSGRAHFERTH--GISLRPWVPDSLDDYTSSRFDAVRAELK 847

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL--------QRLLVLGGTDF 727
              E         +      + ++      E      +   L          L  L     
Sbjct: 848  ARED-AEYRRLLYVALTRAKDMLVLAGGAEPRGGKDSWWHLIDGRLEVDADLRDLVDELD 906

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY-----SFSEIKQLINDP 782
             D L             L     +      +      AQ  +      S   ++  I  P
Sbjct: 907  VDTLPPPADPEPPGPEALLLAEARVEAALLRVRGQRVAQAESLGAAVASAEALQDFIACP 966

Query: 783  YAVYARRILKLDFIPHFKK----------DPDRTDRGTLFHNIITELIK--KRINKNTPE 830
               +    L L   P   +          +PD         +++  L++           
Sbjct: 967  RRFHYVHRLGLRGAPWPWEVLPRGAPPLVEPDGWLPAERPEDLVQRLLRGVDLRLAAPDV 1026

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                 +  +++        P  + +   L    +   S    E     S       +P  
Sbjct: 1027 DASERRAHLETLLRDAGALPDEEGMDAVLNTLERFLTSAFARELARAPSQTIHRS-LPFM 1085

Query: 889  MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
            +A+E   + + G  D +     G   +  +K G       A    +  L+      +   
Sbjct: 1086 LALEG-EVGVEGAVDLLWESPQGEAVVVAFKHGGRHPLGAAAYTYE--LAALGLVARRMV 1142

Query: 949  FSQID 953
               + 
Sbjct: 1143 REGVP 1147


>gi|158312846|ref|YP_001505354.1| UvrD/REP helicase [Frankia sp. EAN1pec]
 gi|158108251|gb|ABW10448.1| UvrD/REP helicase [Frankia sp. EAN1pec]
          Length = 1156

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/537 (10%), Positives = 103/537 (19%), Gaps = 76/537 (14%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +   R ++ A+ +         +               T+RA  ELR     +     
Sbjct: 531  PGTGKTRTLVHAIAHRVRELGVPAE--------QCLAVTFTRRAAGELRERLDVLLAPGP 582

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
                   +  D       +      +  P  +       LA         +         
Sbjct: 583  AGTRAESTPADGTPTDAASTSGAPVDEAPGDTGRPGAGALATTFHGLGLLIIREQHVALA 642

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA------D 186
             +P       A          ++ID         E       E   +    A        
Sbjct: 643  RAPRVQVADDAIR-------GELIDEAMHGTDGPEARRRAAAELAELKRQRALGRTYRDH 695

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPA 241
             L      +   L + N           +       +     +     + +         
Sbjct: 696  ALAGVLARYDAALRDRNMVDLDDLLTLPLGLLRSNPDLAAEYQRRWRHVWVDEFQDIDEV 755

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
               L+  +   P  A +    D       +                    P      L  
Sbjct: 756  QYGLLREL--CPPAADLCAIGDPDQAIYSFRGAEVGFFLRFE-----QDRPGARRVSLTR 808

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                    V    +                              E +          V +
Sbjct: 809  NYRSTPTIVGAALDAIAPTT-------------------FVPGRELRAVTGLDEDGPVVV 849

Query: 362  IEADNEREEAISIAIALRMSL------------------DENKKKSALITADRNLARRVK 403
             +  +E EEAI++A  +  +L                    +    A++      A  V 
Sbjct: 850  RQCASEAEEAIAVADLIEEALGGTSFHSLDSGVDGSERGRLSFADIAVLYRTARQAEPVM 909

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L R G      A  PL+     + + +LL            A      L +       
Sbjct: 910  DALVRRGFPFRQHAHTPLADVPAVAAVLALLRDRRDPAPRTVTA------LLRDAAARLT 963

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                    EL                         +          +     D   A
Sbjct: 964  DLAVAAGTELGTAAALAPGVAQPGGVPAGRLPSEAEIRRAAELLAPAAAVAGDDLGA 1020


>gi|262374135|ref|ZP_06067412.1| ATP-dependent DNA helicase PcrA [Acinetobacter junii SH205]
 gi|262311146|gb|EEY92233.1| ATP-dependent DNA helicase PcrA [Acinetobacter junii SH205]
          Length = 659

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/431 (11%), Positives = 107/431 (24%), Gaps = 62/431 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    Y     L    + I   T+RA  E+ +   +  G +S  L    +       
Sbjct: 37  KTIVARAAYLIDQGLPAQQIQILTFTRRAASEIVTRVEQHMGAQSKGL-RASTFHTFCMY 95

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +          + +    L + RL+        +++        L           
Sbjct: 96  LLRRNPRAFGLTQFSIIDRDDQLLMFRLLRG--KDKGNVLPKAAELCDLYSYARNTKT-K 152

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
           L+  L   +                               +    K + +R  E N    
Sbjct: 153 LSDALFKQLPQAVEY----------------------KSQIAELMKAYEQRKQERNFLDY 190

Query: 208 VGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                 +             + G    +++     + P    L+  +        +    
Sbjct: 191 DDILSIVAVHLQNSPELVKWVTGFCSALLVDEMQDTNPLQWALLQPLVGKVK---LFCVG 247

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       +     ++ +        +          +  L++     + + ++SN +  
Sbjct: 248 DDAQSIYGFRGADFENIHHFKERVPDAE---------VLTLEMNYRSTQGILDLSNWLLE 298

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
           +S +     L     +                      L    NE EEA  I   L    
Sbjct: 299 QSQIGYDKHLQAYRGNGLKPQ-----------------LHILSNEFEEANWIVQDLNQRH 341

Query: 383 DENKKKS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
            +    +   ++       R ++  L    I      G+ L  + H   + SLL      
Sbjct: 342 SQGAAWAEHMILLRSGFSGRYLEGALIAANIPYRFIGGVKLLESAHVKDVLSLLRVSVNP 401

Query: 441 NDFMAIATLVK 451
            D +A    + 
Sbjct: 402 QDDLAWMRFLT 412


>gi|25010945|ref|NP_735340.1| exonuclease RexA [Streptococcus agalactiae NEM316]
 gi|77413173|ref|ZP_00789372.1| reticulocyte binding protein [Streptococcus agalactiae 515]
 gi|81588835|sp|Q8E5T9|ADDA_STRA3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|23095324|emb|CAD46535.1| unknown [Streptococcus agalactiae NEM316]
 gi|77160791|gb|EAO71903.1| reticulocyte binding protein [Streptococcus agalactiae 515]
          Length = 1207

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/586 (9%), Positives = 149/586 (25%), Gaps = 36/586 (6%)

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGST 236
            L   F+   S+ + +  ++ NA          ++   E      L +     +++    
Sbjct: 357 ELLQSFVLDFSEQYLQEKIQENAFEFSDIAHFAIQILEENHDIRQLYQDKYHEVMVDEYQ 416

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS- 295
            +     R++  ++   NG       D       +     +  N       Y  +P    
Sbjct: 417 DNNHTQERMLELLS---NGHNRFMVGDIKQSIYRFRQADPQIFNDK--YKAYQDNPSQGK 471

Query: 296 -------LAKLLDFLDIKREDVKRLGNVS--NEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                       + LD        L +    + +Y  S  +             N   + 
Sbjct: 472 LIILKENFRSQSEVLDSTNSVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVL 531

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVK 403
               +        +     +   EA  +A  +     E     +   L+ + R     + 
Sbjct: 532 LLDTDEDDINDSDSQQYDISPA-EAKLVAKEIIRLHKEENVPFQDITLLVSSRTRNDGIL 590

Query: 404 LELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
               R+GI +    G      ++   ++   L +I    +  A+  L++ P+  F   + 
Sbjct: 591 QTFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDL 650

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                ++       +   + +       L+   ++  K +  +  +Q+            
Sbjct: 651 TRIAIQDVKMAFYHKVKLSYHKEGHHSDLITPELS-SKIDHFMKTFQTWRDFAKWHSLYD 709

Query: 523 LVDHI---LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC-LQNVCLDEHRKLPNLWFE 578
           L+  I         +      +       +++           + +          L  E
Sbjct: 710 LIWKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENE 769

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            +   +     +     + +  +  + ++     I     K  +   ++  IL   +   
Sbjct: 770 NDLADVEVALPQ--NAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIG 827

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           + +   +   L E + P        L   +      +     + +      +A       
Sbjct: 828 IKYVADMRHELEEELLPAVKVSMETLPYQLNKR---ELRLATLSEQMRLLYVAMTRAEKK 884

Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                + +         L                   Q +L    +
Sbjct: 885 LYLVGKASQTKWADHYDLVS-ENNHLPLASRETFVTFQDWLLAVHE 929



 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 14/148 (9%)

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
            D    G+  H ++  +      K       L +   ++  +       I+  ++      
Sbjct: 1046 DPAALGSAVHELMQRIEMSSHVKMEDIQKALTEVNAETSVKAAIQIEKINYFFQ---ETS 1102

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHLTGFADRIDLLKSGFVDITDYK 919
               +++ E +       +    P  M            + G  D   LL    + + DYK
Sbjct: 1103 LGKYIQEEVEH------LHREAPFAMLKEDPESGEKFVVRGIIDG-YLLLENRIILFDYK 1155

Query: 920  TGDNPKKETAQKLIDPQLSLEAAALKAG 947
            T         ++    Q++L A ALK  
Sbjct: 1156 TDKFVNPLELKERYQGQMALYAEALKKS 1183


>gi|331697794|ref|YP_004334033.1| exodeoxyribonuclease V subunit gamma [Pseudonocardia dioxanivorans
           CB1190]
 gi|326952483|gb|AEA26180.1| exodeoxyribonuclease V, gamma subunit [Pseudonocardia dioxanivorans
           CB1190]
          Length = 1124

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/733 (9%), Positives = 179/733 (24%), Gaps = 48/733 (6%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK-------SLGDVVEEKFTADLL 94
              A+  + VP +   + L        G +      +            V E    A  +
Sbjct: 30  DPFAAEVVAVPERGVERWLAQRLAHRLGTRDGRADGVCANVRFPSPAEVVDEVVCAATGV 89

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
              +        + +  L  L+     +    +   +  +  +          LA+ LA+
Sbjct: 90  DPADDPWR--PARAVWPLLELVDEAAAEPGFALLGAHLGTDSADAHRRGRRYALARRLAE 147

Query: 155 IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
           +                   +         A  L+  ++ W      +    P       
Sbjct: 148 LYASYAAHRPGMLGEWLAGADVDAAGGAALAPDLRWQAELWRRLRARIGVPGPAERVETA 207

Query: 215 MRAEAEHLMKGTKGP-IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
                    +   GP + + G T    +   +++ +A H +  + L      +  A+   
Sbjct: 208 CALLRADPGRAALGPRLSVFGPTRLAASRLTVLAALAVHRDVHLWLAHPSPVLWAALTPQ 267

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
                     ++     +P      LL  L     +++    V  +++        + L 
Sbjct: 268 AGTAPRRADDASAAVVANP------LLASLGRDVRELQLRLPVGTDVHHPGPPPPPTLLG 321

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI----ALRMSLDENKKKS 389
                +R+          +      V +        +   +       L        +  
Sbjct: 322 ALQCALRDDVAPGAVPTVLDPADRSVQVHACHGPDRQVEVLREVVLGLLAADPTLEPRDV 381

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            ++  D      +           D   G P           +L      L+    +  L
Sbjct: 382 VVMCPDIETFAPLISATFGLAAGTDDDTGHPGHRLPVRLADRALRQVNPLLDTVATLLEL 441

Query: 450 VKHPLAKFGFPEKYLSRAKNALELV-----------------ALRGNKNSYDIMDLKSLV 492
               L      +   +                              + +      L +  
Sbjct: 442 ADARLTATQVLDLAATEPVRRRFRFDDDALDRLRDLVVGSGVRWGLDADHRGPFALGAFA 501

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLL-------VDHILQCITPLVTYKTNKNSTC 545
            +  +   +   +         +    A+ L       VD + +    L           
Sbjct: 502 QNTWSAGLDRMLLGVAMDEADRQWLGTALPLDDVGSSDVDTVGRFAELLDRLAAVLAGLR 561

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
           G  ++++W       L  +              +    L+ + +      + +     + 
Sbjct: 562 GERTLAEWGAALAAGLDALTT--TTPTDAWQAAQARAELAEVTASAGPHAASVPLGLPDV 619

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
             ++   + G   +    ++ TL +   +  R +    + L GL++G +P+    +   +
Sbjct: 620 RGLLADRLRGRPTR-ANFRTGTLTVATLVPMRSVPHRVVCLLGLDDGAFPRAGEPDGDDA 678

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY-TRSLRENNIPTIASRWLQRLLVLGG 724
                 +  +       Q   D   A     ++  + +     +    S  +  LL    
Sbjct: 679 LARDPRVGERDPRSEDRQLLLDAVGAATEHLVVVHSGADERTGVRRPPSVPVGELLDALD 738

Query: 725 TDFFDNLKKRGQC 737
                   +R + 
Sbjct: 739 AVAVGPDGRRARD 751


>gi|309778890|ref|ZP_07673660.1| ATP-dependent DNA helicase, UvrD/REP family [Ralstonia sp.
           5_7_47FAA]
 gi|308922237|gb|EFP67864.1| ATP-dependent DNA helicase, UvrD/REP family [Ralstonia sp.
           5_7_47FAA]
          Length = 716

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/541 (11%), Positives = 140/541 (25%), Gaps = 55/541 (10%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TL     +   N      + +   ++RA  EL +    +  +           G+    
Sbjct: 58  HTLGWRVAHLVANGADPQRILLLTFSRRAASELSNRAGHLLARAMQ--------GERSNN 109

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK--LPDIIKDLYPESPLSLPISPANA 145
              +         P           ARL+  +  +  L              L     + 
Sbjct: 110 ALNSAGTSYKTTLPWAGTFH--GIGARLLREYAERVGLAPDFTIHDRSDSADLLNVVRHE 167

Query: 146 IWLAKN-----LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
           + L+       L      I +     E       + +  W  +    L+     + E   
Sbjct: 168 LNLSTKERRFPLKQTCIAIYSRAINAESPLNAVLKHHFPWCAMWETQLRTLFDAYVEAKQ 227

Query: 201 ELNA--SSPVGYQIALMRAEAEHLMK--GTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             +      +      M ++ E   +       I++     +    + ++  +   P+G 
Sbjct: 228 AQHVLDYDDLLLYWHAMSSDTELAAEIGARFDHILVDEYQDTNRLQSSILRAL--RPDGR 285

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V    D       +   T ++      + +   H           L+      + + + 
Sbjct: 286 GVTVVGDDAQSIYAFRAATVRNILDFPRHFSRPAHT--------VLLERNYRSTQPILDA 337

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           SN   G     ++ F     +D  +T                  LI   +E E+A  +A 
Sbjct: 338 SN---GVMRFATERFAKTLWTDRASTHRPR--------------LISVRDEAEQARCVAE 380

Query: 377 ALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +    +     K  A++    + +  +++ELTR  I      G+      H   + S+L
Sbjct: 381 QVLHHREGGLTLKSQAVLFRTASHSAPLEIELTRRNIPFVKYGGLKFLEAAHVKDVLSVL 440

Query: 435 NAIFKLNDFMAIATLVK-----HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
                  + +A   +++      P       +     A     L+A              
Sbjct: 441 RWAENPRNRIAGFRVIQLLPGAGPATAARVLDAMAEAADPIAALLAYEPPARLAGDWSTL 500

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
             ++  +   K++         +          L D        L        +      
Sbjct: 501 MALMQTLRVPKDSLEWAGELEAVGAWYSPHMERLHDDAAVRQGDLDQLARMAATYATRER 560

Query: 550 I 550
            
Sbjct: 561 F 561


>gi|238020584|ref|ZP_04601010.1| hypothetical protein GCWU000324_00470 [Kingella oralis ATCC 51147]
 gi|237867564|gb|EEP68570.1| hypothetical protein GCWU000324_00470 [Kingella oralis ATCC 51147]
          Length = 1184

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 79/295 (26%), Gaps = 18/295 (6%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  I + ++   + +       TG  + +         +        +     L+P 
Sbjct: 29  PFAAEEIVIQSQGMRRYISQYLARETGIAANL--RFSLPAGLAWRLMREAMPDIPALSPF 86

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S + R   LA L                      L      A  LA  LAD+ D     
Sbjct: 87  SSEVMRWRLLA-LFQSDEFAQSPDFAAARQALAPYLHNGDYAAYQLAGQLADVFDQYLVY 145

Query: 163 EKKWEDLHALKNEKYGMWWLLAA-DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
              W  +      K       +     +I      + L +    +P  +++ L R   + 
Sbjct: 146 RPDW--IETWAAGKLVPELAHSRSADTQIWQAQLWQHLDDGKQGAP--HRVQLWRTLMQS 201

Query: 222 LMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
           L +          + G     P   +L++ +A H    I            I     +  
Sbjct: 202 LARPNPRLPQRYFVFGIATLAPMYLQLLAQLAQHSQVHIFALNPSQAYWGNIIEPA-QIL 260

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
               +++ +Y  HP      LL  L  +  D                  S+   P
Sbjct: 261 NQTQTADLSYQGHP------LLASLGKQGRDFFNELAEVEAQLDLDSYTSEPQSP 309


>gi|157786457|ref|YP_001491634.1| Putative RecB family exonuclease [Mycobacterium phage U2]
 gi|40769377|gb|AAR89703.1| gp63 [Mycobacterium phage U2]
          Length = 234

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 53/181 (29%), Gaps = 30/181 (16%)

Query: 850  PHIDIIWRHLFHKISHSFLEH---EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
                 I      K       H   E           + +  +  ++  GI + G+ D + 
Sbjct: 75   ERRWGIGLQQVDKTLDWIDNHQSLEVWHAPDGTP-GIELAIEFELD--GIEIRGYIDAVL 131

Query: 907  LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
            +L  G V + D+KTG  P         D QL++ A AL      Q+   ++    Y   K
Sbjct: 132  VL-DGEVLVVDWKTGLKP-------GDDFQLAVYALAL-----KQLYGVEITRGVYFMAK 178

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI---QSE 1023
                                 EK      E+   L+ G+  F      S          E
Sbjct: 179  TGKPTYPYDLTDWTR------EKISARFHEMERKLEAGD--FTPKPGASCARCDVALSCE 230

Query: 1024 Y 1024
            Y
Sbjct: 231  Y 231


>gi|310286974|ref|YP_003938232.1| ATP-dependent DNA helicase, UvrD/REP helicase [Bifidobacterium
            bifidum S17]
 gi|309250910|gb|ADO52658.1| ATP-dependent DNA helicase, UvrD/REP helicase [Bifidobacterium
            bifidum S17]
          Length = 1400

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/661 (9%), Positives = 169/661 (25%), Gaps = 63/661 (9%)

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
                 +    A      A  + + +  +        A+++    +    +  L       
Sbjct: 765  DSLGQIEEDTAAVPDTPADVVLMTIHQAKGLEWDAVAVVSMQSGVFPSNQGGLHVELDAE 824

Query: 414  DISAGIPLSTTLH--SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
                G   S T     + + S  +    +   + +   +         P+        AL
Sbjct: 825  HPGGGAGESWTPPEYKATVRSWADDPAAVPAPVRVDAGILPRFPHDANPDDAPVETLRAL 884

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
            + V +  ++   D+         R     ++  V    S    +++E    L+      +
Sbjct: 885  DDVEVIDDEFYGDL---------RSKDIGDDMDVADPSSWYLTQEEEYGRRLLADER-RL 934

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
              +   +  K++       S   +     L           P++++ E   +L      +
Sbjct: 935  AYVALTRAKKDALLTYSQYSILDRDPSQYLNRPGKRPSASKPSVFWTEMQDSLCHESGLV 994

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                S     +  + +    + D          +S      +L+   ++       G + 
Sbjct: 995  SACKSG----SAGYSENADAIADSSPDLAVAGAASGASAHPSLDQLGVDRPQGFFVGDHA 1050

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
              + ++  +  + + + + +            +        G           + +    
Sbjct: 1051 TEYERDVVEEAWNAPLEEREQG-GGPTWPAKLSEETLSKLTGGMSGDSGLVTDDPDSLLA 1109

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
             +R L     L    F    ++  +        L    +Q           +  +     
Sbjct: 1110 RARMLVEDPDLMPWSFGRGEREIDRYVRRQAEHLLEHGRQNVTALQVRAGHMTQREERGY 1169

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            +  + + I                    +      + GTLFH    + I    +  + + 
Sbjct: 1170 WRGLIRPI-------------------PRVASPAAEAGTLFHAWAEQFINAYGDGQSIDA 1210

Query: 832  NHL----------------MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI- 874
            + +                 + +       +     +         +    +     +  
Sbjct: 1211 DGIGAYDSSSIETGTAGTCREPVTRESLLHDLSELEMKSDTLTAKERQLTVWQRRLAEST 1270

Query: 875  QSSIEKIFVNIPAKMAIE-SIGIHLTGFADRIDL------LKSGFVDITDYKTGDNPKKE 927
             S     +      ++I     + + G  D +          +    I D+KTG  P+K 
Sbjct: 1271 WSERRPAWAERQIVVSIPQLGDVIVNGKLDAVFHGGLDANDPTKQYTIVDWKTGRKPRKP 1330

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
               +    QL      L       +   ++    Y  L +  +     + + K   + L+
Sbjct: 1331 QDIEHKLVQLDWYRLLLSY--IEHVPLDRIDATLYY-LSEPDEGARELHARAKTEQEILA 1387

Query: 988  E 988
            E
Sbjct: 1388 E 1388



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 64/612 (10%), Positives = 139/612 (22%), Gaps = 43/612 (7%)

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
           +   + +T  L++    +     + L                       S        S 
Sbjct: 294 ERYRRRYTHVLLDEYQDTSTTQAMLLATLFHPQSDADADR--------SSSRWREAARSA 345

Query: 249 VANHPNGA-----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-THPQYSLAKLLDF 302
                +G       V    D       W   +  +  +   +         Y L+     
Sbjct: 346 GGRSKDGVGLSRSAVNAVGDPFQSIYAWRGASPGAFRMFQKDFGMPADAKPYPLSVTRRN 405

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
             I       L         R+            S +     + N           + ++
Sbjct: 406 TCIVLRAANNLTEPLRIPPRRA-----------GSSLMREVDVANLSAMDNAAEGTIGVL 454

Query: 363 EADNEREEAISIAIALRMSLDENKKK-----------SALITADRNLARRVKLELTRFGI 411
                 +EA ++A   + ++   +K             A++   +    +   EL R G+
Sbjct: 455 GFATFGQEADAVARFAKQAIARYRKDAAATAASDTPHVAVLFRGKTHMAQFAQELERAGL 514

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
              +     L        L +LL+A     D  ++  L+  P    G             
Sbjct: 515 TTLVVGYSALLERPEVQDLIALLHAAADHTDSASLMRLLATPRFGLGSESLTRLAGMAED 574

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                R        +        R     +   VP         + +    +       +
Sbjct: 575 LDSQCRYRALVESGIIGSGSDGARADDGHDEATVPTSIDSGLVSEADGGSDIATFADPQV 634

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             +V     ++     + + D                  +  +    + G+ L  + +  
Sbjct: 635 KAIVK--QYRDRVPHAVFLIDMMMRDDLPSLLSRRGGFDETTSHRIIQAGEVLQRVHAVT 692

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                 +   A+  +++    I  + VK   +  +       L+S     DT     +  
Sbjct: 693 NHPLKEVIDAAVRALNLDIDTIVAQAVKNPSQPVNPTQARSPLQSVAALVDTYTQEIVEG 752

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRENNIPT 710
                    +   S     +      +            A G     +   S++    P+
Sbjct: 753 VNPTLRGFMSWVDSLGQIEEDTAAVPDTPADVVLMTIHQAKGLEWDAVAVVSMQSGVFPS 812

Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK----PFPPLEAQ 766
                   L                +         D     P   R      P  P +A 
Sbjct: 813 NQGGLHVELDAEHPGGGAGESWTPPEYKATVRSWADDPAAVPAPVRVDAGILPRFPHDAN 872

Query: 767 PRTYSFSEIKQL 778
           P       ++ L
Sbjct: 873 PDDAPVETLRAL 884


>gi|262202649|ref|YP_003273857.1| exodeoxyribonuclease V [Gordonia bronchialis DSM 43247]
 gi|262085996|gb|ACY21964.1| Exodeoxyribonuclease V [Gordonia bronchialis DSM 43247]
          Length = 1134

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 77/874 (8%), Positives = 190/874 (21%), Gaps = 96/874 (10%)

Query: 215  MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
            +   A   ++ T    ++     + P    ++    +     +++   D       +   
Sbjct: 258  VGEAACRRIRSTFAVALVDEFQDTDPLQWDIVRRCFHGHRRLVLV--GDPKQSIYGFRGA 315

Query: 275  T------EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
                      +  T      +      L   L  L            V       +    
Sbjct: 316  EVLSYLSAVRSADTLRALDTNRRSDGDLVASLWTLYGGATLGHPGIVVHPVGAAHAGSRL 375

Query: 329  KSFLPPDTSDMRNTDILEN---KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
               +P        TD        +P+     + +    AD+      +    +       
Sbjct: 376  DGAVPMQVRAFMRTDFNRLNSLGVPSAPDARARITTDVADHISSALSAGMTIVVDGARRP 435

Query: 386  --KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                  A++         ++  L   G+N  I +G+ +  T  +     +L A+ + +  
Sbjct: 436  VEPGDIAVLVRQNKTIEPLQTALAARGVNAVIGSGVNVFETSAAQHWLWVLRAVEQPSRP 495

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVA-LRGNKNSYDIMDLKSLVLDRIATQKNN 502
              +      PL  +      +       EL A        +      ++    +A +   
Sbjct: 496  DRVRLAALTPLLGWTPERLAVQAETGTAELGAGFAALGQVFGECGFAAMAQRLMAQENVA 555

Query: 503  THVPHWQ-------------SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
              V   +             +  +++  E    +   +      +      +     +  
Sbjct: 556  ARVLAMRGGERLLTDLLQISALCNKQVVESGEGISGLVEWLADRIADSSRRQRHEDQSRR 615

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
            +   T+       +        +  + F  +G  +              +   +      
Sbjct: 616  LERDTEAVQIMTVHASKGLQFPIVYVPFGWDGTWIDEEGDLTFHDDEGTRLLDVAGPGAP 675

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
             R         ++       +   L        T      N    P +         + +
Sbjct: 676  GRGTRRARYAEEVAGEDLRLLYVALTRAQSQVVTWWAPTANTPTGPLHRLIFGRQRALAE 735

Query: 670  SDLNLKTAEKYIGQAAH----------DFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
                   A   + ++              ++A     +  + + R    P   +      
Sbjct: 736  RSGTDPQAPWTVAKSVDVPDDVECVTVLRQLAERDSRIEVSPAGRLPTPPAGPAGDDPAD 795

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            L +     FD    +      ++  +      P                      I+   
Sbjct: 796  LPVLSAAAFDRRIDQQWRRTSYSAIIAGAAHGPSAVETGSERDGARLDTALDDEPIEAPE 855

Query: 780  NDPYA-VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
                  +      +                GTL H ++  +     +  +     + +  
Sbjct: 856  PLAGNVIEDESGERTGTPSPMSGLSFGAGFGTLVHEVLEYVDTSAPDIRSHVAQLVARAA 915

Query: 839  -----------IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
                       +          P        +  +   + L+ E  +            A
Sbjct: 916  GVRGGTVDVNVLTDALVGVLTTPLGFGDLWSIAPRDRLAELDFELPLGDDAASDETETGA 975

Query: 888  KMA-------------------------IESIGIH--LTGFADRIDLLKSGFVDITDYKT 920
             +A                         + +  +   LTG  D +  +  G   + DYKT
Sbjct: 976  TVAEIADLMDRHLGADDPLRPYAQVLRGVPAARLRGFLTGSIDSVLRVPDGRYVVVDYKT 1035

Query: 921  GD--------------NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF----- 961
                                E        Q  L + AL      +I      +       
Sbjct: 1036 NRLRPGELMVEDFHSGAMATEMIHAHYPLQALLYSVALHRYLRWRIAGYTPEHHLGGVQY 1095

Query: 962  -YIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
             ++R              +     EL       L
Sbjct: 1096 HFVRGMAGPSTPPGCGVFEWKPPSELVTAISDLL 1129


>gi|307730566|ref|YP_003907790.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
 gi|307585101|gb|ADN58499.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
          Length = 812

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 74/677 (10%), Positives = 175/677 (25%), Gaps = 70/677 (10%)

Query: 46  SVTIYVPTKRAIQELRSEFIE----ITGKKSTILPIIK---SLGDVVEEKFTADLLLSYN 98
            + +   ++RA QE+            G ++ +   +    +   V       +      
Sbjct: 103 RILLLTFSRRAAQEMTRRVTRIATAALGTRAALAQGLTWAGTFHSVGARLLR-EYAELIG 161

Query: 99  LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           L P  +   R    A L+ + R++L    K     +  +     +  +    +L  ++D 
Sbjct: 162 LAPAFTINDREDS-ADLMNLVRHELGLSAKGRRFPAKGTCFAIYSRVVNTGASLGQVLDN 220

Query: 159 IETEEKKWE-DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217
                ++WE DL  L           +         YW+    E                
Sbjct: 221 AFPWCREWEADLRMLFAAYVDAKQKQSVLDYDDLLLYWSHMAAEP--------------- 265

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                +      +++     +    A ++  +   P+G  +    D       +   T +
Sbjct: 266 AIAADLSARFDHVLVDEYQDTNRLQASILLALK--PDGRGLTVVGDDAQSIYSFRGATVR 323

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +     +        Q+        L+      + +   SN +   +       L  D +
Sbjct: 324 NILDFPA--------QFDPPATRVTLERNYRSTQPILAASNAVIELASERYTKNLWTDKA 375

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITAD 395
             +                    L+   +E ++A  +   +  + ++    K  A++   
Sbjct: 376 SAQRP-----------------RLVTVADEVDQARYVVEQVLEAREQGVKLKSQAVLFRA 418

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK---- 451
            + +  +++ELTR  I      G+    ++H   + ++L       D +A   +V+    
Sbjct: 419 AHHSAALEIELTRRNIPFVKFGGLKFLDSVHVKDMLAVLRWAENPRDRVAGFRVVQLLPG 478

Query: 452 -HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             P       +   +R        A      +       +      A           ++
Sbjct: 479 VGPATAAKLLDDIAARMDAGSAGEATSDAIGTGAARGTAAGTAAGTAAGTATGTAAGTRA 538

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL---------SISDWTKLTVTCL 561
             +      A           T      T   S                           
Sbjct: 539 GTAAGTSTGATAGTATGTATDTTTGIGTTGSASAANKAARALAAFTPPPRAQEDWHPFVK 598

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
               +          FE   +      ++  E  +   A+ ++   I       E    +
Sbjct: 599 LMSSVYGRETPWPAEFEMVRRWYEPHLARNHEDAAVRHADVLQMESIAGTYASRERFLTE 658

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ--SDLNLKTAEK 679
           +               L++ D LIL  ++     +               SDL   + E+
Sbjct: 659 LTLDPPDATSDESGVPLIDEDYLILSTIHSAKGQEWRNVFVLNGVDGCIPSDLGTGSQEE 718

Query: 680 YIGQAAHDFEMANGTRH 696
              +    +      + 
Sbjct: 719 IDEERRLLYVAMTRAKE 735


>gi|226951946|ref|ZP_03822410.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter sp. ATCC 27244]
 gi|294649208|ref|ZP_06726646.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter haemolyticus ATCC
           19194]
 gi|226837284|gb|EEH69667.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter sp. ATCC 27244]
 gi|292824875|gb|EFF83640.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter haemolyticus ATCC
           19194]
          Length = 659

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/431 (11%), Positives = 108/431 (25%), Gaps = 62/431 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    Y     L    + I   T+RA  E+ +   +  G ++  L    +       
Sbjct: 37  KTIVARAAYLIDQGLPAQQIQILTFTRRAASEIVTRVEQHMGAQAKGL-RASTFHTFCMY 95

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +          + +    L + RL+           +     + L       +   
Sbjct: 96  LLRRNPRAFGLTQFSIIDRDDQLLMFRLL-----------RGKDKGNVLPKAAELCDLYS 144

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            A+N    +      +   + +                  +    K + +R  E N    
Sbjct: 145 YARNTKTKLSEALVAQL-PQAIEY-------------KAQITELMKAYEQRKRERNFLDY 190

Query: 208 VGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                 +             + G    +++     + P    L+  +        +    
Sbjct: 191 DDILAIVAVHLQNSPELVKWVTGFCSALLVDEMQDTNPLQWALLQPLVGKVK---LFCVG 247

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       +     ++ +        +          +  L +     + + ++SN +  
Sbjct: 248 DDAQSIYGFRGADFENIHHFKERVPDAE---------VLTLQMNYRSTQGILDLSNWLLD 298

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
           +S +     L                            L    NE EEA  I   L    
Sbjct: 299 QSQIEYDKHLKAYRGQGLKPQ-----------------LHILSNEFEEANWIIQDLNQRH 341

Query: 383 DENKKKS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
            +    S   ++       R ++  L    I      G+ L  + H   + SLL      
Sbjct: 342 LQGAAWSEHMVLLRSGFSGRYLEGALIAANIPYRFIGGVKLLESAHVKDVLSLLRVSVNP 401

Query: 441 NDFMAIATLVK 451
            D +A    + 
Sbjct: 402 QDDLAWMRFLT 412


>gi|332702563|ref|ZP_08422651.1| UvrD/REP helicase [Desulfovibrio africanus str. Walvis Bay]
 gi|332552712|gb|EGJ49756.1| UvrD/REP helicase [Desulfovibrio africanus str. Walvis Bay]
          Length = 731

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/672 (8%), Positives = 177/672 (26%), Gaps = 72/672 (10%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    +     +   S+ +   T++A QE+ +                     ++ +
Sbjct: 36  RTIVYRLAHLVEQGVQPESILLLTFTRKAAQEMLAR------------------ASLLLD 77

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS-PANAI 146
                +      +   + ++R  +L  L   +         D+  ++  SL +     + 
Sbjct: 78  HGLTGVSGGTFHSFAYAQLRRHAQLFDLKSGFTVMDRADALDVLGQAKDSLGLGRTERSF 137

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              + + ++I     +E   E +   ++     +     + L   +K +           
Sbjct: 138 PKKETILELIGKSRNKETDLESVLQQESFHLMPY----LEILGNMAKGYQAIKQRHGLLD 193

Query: 207 -----PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                 V  ++   R +    ++     I++     +    ARL+  +A       V+  
Sbjct: 194 YDDLLFVFERLLTEREDVRERLRERFRYIMVDEYQDTNKVQARLVKLMAGLQGN--VMAV 251

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            D       +   +  +                    L+  L+      + + +++NE+ 
Sbjct: 252 GDDAQSIYAFRGASVANILRFPKEYPG---------ALVIRLEQNYRSTQPILDLANEVL 302

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
             +                     ++     +     + +    +  +  I++++   + 
Sbjct: 303 RHAAHKFD----------------KHLFTEREDGPKPMLVRTLSDATQHQIAMSLIADLQ 346

Query: 382 LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                 + A++      +  ++++L++ GI      GI  S   H     + L  +   +
Sbjct: 347 KKYALHEIAVLFRAGYQSYGLEVQLSKLGIRFQKYGGIRFSEAAHIKDALAYLRLVVNPS 406

Query: 442 DFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
           D  A   + KH         +       +  E    +  K   ++ +L  L+    A + 
Sbjct: 407 DLPAWQRVFKHVKGVGPKTAQGLFEAVISGNEAHVAKTRKRFPELTELFGLLDGLRARRP 466

Query: 501 NNTHVPHWQSRL---------------SEEDKELAVLLVDHILQCITPLVTY-KTNKNST 544
                                       ++  E    +  +       L      N    
Sbjct: 467 APLTALDEVMAWYGPILIRDYPDDYPRRQQGLEQLARIAANYPDLEAFLGDLTLENPEDN 526

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               +       T+   + +       L  +      +        + E    +      
Sbjct: 527 SREAAHDALVLSTIHSAKGLEWKAVLMLDLVEDRFPSRKAMQRPEDLDEERRLMYVACTR 586

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
             D +   +        +E+S        +     +         + G+           
Sbjct: 587 AKDFLALFVPETVYMRGLERSEPTRPSPFVLEMEPSSYEEWRENFSGGLARAGGGAPMGR 646

Query: 665 SRVMQSDLNLKT 676
            + +   +   +
Sbjct: 647 RQALDQAIGRPS 658


>gi|269122171|ref|YP_003310348.1| hypothetical protein Sterm_3583 [Sebaldella termitidis ATCC 33386]
 gi|268616049|gb|ACZ10417.1| hypothetical protein Sterm_3583 [Sebaldella termitidis ATCC 33386]
          Length = 853

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/415 (11%), Positives = 117/415 (28%), Gaps = 44/415 (10%)

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
            + +      R    + ++L  ++E           FL    +    L   E+        
Sbjct: 463  IILDDFKSYRNEEKEKIVLFNIHEKNLYDINENLFFLGEREREANGLPGIEELKKNEKFR 522

Query: 688  FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                  +  +I   SL   +     S   + + +     F + +              D 
Sbjct: 523  IFRFLNSAKIIDIYSLEIQDQNIFVSSLAEEIRIENNLKFNEIMFNESNIKSILKEIFDE 582

Query: 748  TTKQPHYKRPKPF-PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
               + +  R                  + + L    Y  Y ++++ L      ++     
Sbjct: 583  KKIEYNGSRDDTLYKSGPGSELKIGAYDFRDLRECHYRFYLKKMIGLKEFVEPQEKITSK 642

Query: 807  DRGTLFHNIITELI-----KKRINKNTPEINHLMKQIIDSHFEKENLPPHI------DII 855
              G L H +  ++      K   N         +++ + +  + E+           + I
Sbjct: 643  SLGILIHEVFEKISVIQKEKIMNNLKFDINTTEVEKTVKNVIKNESEKISKKYGNYYEEI 702

Query: 856  WRHLFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914
               +  +    F ++ E+KI+  I         +  I    + + G  D +   +     
Sbjct: 703  IFPIVTESVAVFFKNIEKKIKDGIIVFEPEFKKERQITD-NVKIVGKLDLLIETE-KEHF 760

Query: 915  ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
            I D+K+G              QL   +  +     ++     V ++ +            
Sbjct: 761  IIDFKSGK---------GKLGQLYFYSNLIYENESAEKIIYNVLDMSF------------ 799

Query: 975  TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
               + K    E    +L ++ E++   +  ++          K+    EY  + R
Sbjct: 800  ---EDKDDGKEFL--TLSDMKEVIDDFEKSDK---YRRTDDPKNCRFCEYREICR 846


>gi|241768187|ref|ZP_04765635.1| exonuclease-like protein [Acidovorax delafieldii 2AN]
 gi|241360397|gb|EER57561.1| exonuclease-like protein [Acidovorax delafieldii 2AN]
          Length = 188

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 56/209 (26%), Gaps = 28/209 (13%)

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
            +++  + +       E         W  +         +HE+            +  +  
Sbjct: 1    MDNAARAVTQQQGLAEGDFLPFAAGWPQVRDGYLRWLAQHEKT---GAVFRQAEVQTRQP 57

Query: 891  IESIGIHLTGFADRIDL---LKSGFVDITDYKT-GDNPKKETAQKL-IDPQLSLEAAALK 945
            + +  + L G  DRID           + DYKT  D   K+       D QL+  AA L 
Sbjct: 58   LGA--LQLVGTIDRIDAVSSTGEPTPLVIDYKTENDAVTKKRIGAGAEDTQLAFYAALLS 115

Query: 946  AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005
                            Y+ + ++ +      +   +  D L E    +   +        
Sbjct: 116  H---------DTLRAAYVNVGERGETQMHEQEAVVHLRDLLVEGIQHDFARMAA------ 160

Query: 1006 QPFISHLRLSE-KSNIQSEYDHLARVAEW 1033
                    L E           L R   W
Sbjct: 161  --GAPMPALGEGSVCDYCAVRGLCRKDFW 187


>gi|226942221|ref|YP_002797294.1| DNA-dependent helicase II [Azotobacter vinelandii DJ]
 gi|226717148|gb|ACO76319.1| DNA helicase II, UvrD [Azotobacter vinelandii DJ]
          Length = 726

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/650 (8%), Positives = 141/650 (21%), Gaps = 138/650 (21%)

Query: 170 HALKNEKYGMWWL---------------------LAADFLKIASKYWTERLVE------- 201
           H L +      W                           L +  + W  R  +       
Sbjct: 93  HGLAHRLLRAHWQEAGLAENFQILDADDQQRLVKRVIRELGLDEQRWPARQAQWFINAKK 152

Query: 202 ---------------------------------LNASSPVGYQIALMRAEAEHLMKG--- 225
                                                      +  +    +        
Sbjct: 153 DEGLRPQHIQPGGDLFLATQAKIYAAYEAACARAGVIDFAELLLRALDLWRDRPGLLEHY 212

Query: 226 --TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                 +++     +       +  +A    GA ++   D       W     ++     
Sbjct: 213 QRRFRHVLVDEFQDTNAVQYAWLRLLAQ--GGASLMAVGDDDQSIYGWRGARIENIQQFC 270

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +   +                           +  +              +     N  
Sbjct: 271 QDFPAAE--------------------------TIRLEQNYRSTGSILKAANALIANNQG 304

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARR 401
            L  ++         + L  A NE +EA  +  ++  +L +   + + A++      +R 
Sbjct: 305 RLGKELWTEGADGEPIGLYAAFNEHDEARYVVDSIEQALKDGLTRSEIAILYRSNAQSRV 364

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           ++  L R  I   I  G             + L  I   ++  A+  ++  P        
Sbjct: 365 LEEALLREKIPYRIYGGQRFFERAEIKNAVAYLRLIHTRHNDAALERIINLP-------- 416

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                                  +  L+ L  +   +     H       +S        
Sbjct: 417 ---------------ARGIGEKTVETLRQLAREADLSLWGALHQAVGGKLVSGRAASALN 461

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             V+ I        +            +I    + +     +      +    +   EE 
Sbjct: 462 AFVELI-------DSLALKVEQLPLPQTIQVVVEDSGLRAYHGAEKGEKAQARVENLEEL 514

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            + +  F    + G             +         +   +   ++ ++    ++ L F
Sbjct: 515 VSAARAFEHYEDEGLQTP-----LAAFLDHASLEAGEQQAGDFEDSVQLMTLHSAKGLEF 569

Query: 642 DTLILGGLNE---GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
             + L G+ E                     + + +  A + +  +  +     G+    
Sbjct: 570 PQVFLVGMEEGLFPHKMSLEEPGRLEEERRLAYVGITRAMRRLVVSYAETRRLYGSE--- 626

Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
            T +     +  I    L+ + +  G      ++      L      D  
Sbjct: 627 -TYNRISRFVREIPPALLREVRLSNGPGRPVAVRAGQGSPLAGAAVPDSP 675


>gi|323692612|ref|ZP_08106844.1| hypothetical protein HMPREF9475_01707 [Clostridium symbiosum
           WAL-14673]
 gi|323503309|gb|EGB19139.1| hypothetical protein HMPREF9475_01707 [Clostridium symbiosum
           WAL-14673]
          Length = 410

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 75/289 (25%), Gaps = 25/289 (8%)

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD----FLKIA 191
           L L  S  + I     L  ++          E L  L +E     W          + + 
Sbjct: 106 LKLFGSHLDKIGFIGELKSMLSEFFQYGITAEVLEELVSEADKENWSAMLKQKLNDMVVL 165

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
            + + +   +            L R   +         + + G TG  P   RL+  +  
Sbjct: 166 HRAFKKYTEDKKCIVKEEILEMLCRVLPDS-ELIRGSVVTLDGYTGFTPVQYRLLELLLQ 224

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           +    +V   +D                +  S     S H    L  L       RE+  
Sbjct: 225 YCRRVVVTITMDPEENPY--------RESGPSHLFHMSKHTVCRLTDLAAQTGAGREEDI 276

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
            L       +           P      +       +          V L ++D   +E 
Sbjct: 277 LLLQYPAYRFK--------NSPELQFIEKELFRFRGRKYEESSGAPGVVLFQSDTPLKEV 328

Query: 372 ISIA---IALRMSLDENKKKSALIT-ADRNLARRVKLELTRFGINIDIS 416
             IA     L        +  A++T A  + +R +  +     I   I 
Sbjct: 329 QMIAGEIERLIKQEKYRYRDIAVVTGALDDYSREIVRQFETNRIPAFID 377


>gi|299069674|emb|CBJ40950.1| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia
           solanacearum CMR15]
          Length = 710

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 80/738 (10%), Positives = 183/738 (24%), Gaps = 117/738 (15%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TL     +   N      + +   ++RA  EL S    +           ++L      
Sbjct: 55  HTLGWRVAHLVANGADPQRILLLTFSRRAASELSSRAGHLLA---------RALQGSAGA 105

Query: 88  KFTADLLLSYNLNPPVS----NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
           +  A       L    +      + L E A  I +  +       D      +       
Sbjct: 106 RSAAGTAYRTALPWAGTFHGIGARLLREYAERIGLAPDFTIHDRSDAADLLNVVRHELNL 165

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
           +       L      I +     E       +++  W  +    L+     + E     +
Sbjct: 166 STKERRFPLKQTCLAIYSRAINAESPLDAVLKQHFPWCAMWQAQLRTLFDAYVEAKQAQH 225

Query: 204 ASSP----VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                   + +   +  A+    +      I++     +    + ++  +   P+G  + 
Sbjct: 226 ILDYDDLLLYWHAMVADADLAAEIGARFDHILVDEYQDTNRLQSSILRAL--RPDGRGLT 283

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       +   T ++      + T   H           L+      + +   SN 
Sbjct: 284 VVGDDAQSIYAFRAATVRNILDFPRHFTRPAHT--------VLLERNYRSTQPILEASN- 334

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
             G     ++ F     +D  +T                  LI   +E E+A  +A  + 
Sbjct: 335 --GVMRFATERFAKTLWTDRASTHRPR--------------LISVRDEAEQARCVAEQVL 378

Query: 380 MSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
              +     K  A++    + +  +++ELTR  I      G+      H   + S+L   
Sbjct: 379 RHREGGLALKSQAVLFRTASHSAPLEIELTRRNIPFVKYGGLKFLEAAHVKDVLSVLRWA 438

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
               + +A   +++                                 +         R+ 
Sbjct: 439 ENPRNRIAGFRVIQ--------------------------------LLPGAGPATAARVL 466

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                   P            LA      ++  +  L T K N        ++  W    
Sbjct: 467 DAMAEAADPVAALLAHVPPARLAGDWA-ALMTLMATLRTPKDNAAWAGELEAVGAWYAPH 525

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
           +  L +        L  L        +++ ++      + +  +  E        +  + 
Sbjct: 526 MERLHDDAAVRQGDLDQL------ARMAATYASRERFLTEMTLDPPE--------LTSDE 571

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                     L +     S+   +  + L    +G  P              +DL   + 
Sbjct: 572 SGEPYRDEDYLILSTIHSSKGQEWKAVYLLNAVDGCMP--------------ADLGAGSH 617

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
           ++   +    +      R  +            +  R+        G       + R   
Sbjct: 618 DELEEERRLLYVAMTRARDHL---------DILVPQRFYMTQQTPNGDRHLYASRTRFIP 668

Query: 738 YLDWTRKLDYTTKQPHYK 755
                   +     P   
Sbjct: 669 -PALLPLFEACAWPPPEP 685


>gi|171058459|ref|YP_001790808.1| exodeoxyribonuclease V subunit gamma [Leptothrix cholodnii SP-6]
 gi|170775904|gb|ACB34043.1| exodeoxyribonuclease V, gamma subunit [Leptothrix cholodnii SP-6]
          Length = 1294

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 95/951 (9%), Positives = 209/951 (21%), Gaps = 112/951 (11%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSL 81
           LL  T+++     PL P  L    + V +    + L+    +  G  +     LP     
Sbjct: 23  LLLETVLQWLAAHPLAP--LEEEVLLVQSNGIAEWLKMSLAQRVGVCAATRVELPARFLW 80

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                    A       L+      + +  L  L      +                   
Sbjct: 81  RCYRAMLGRAGAPARSPLDKGPLAWRLMRVLPALAGRPGFEPLAQFLAGPGGPTPDAAPD 140

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL-- 199
               + LA+ LAD+ D  +     W    A            AA     A + W   L  
Sbjct: 141 LPRRLQLAQRLADLYDQYQVYRADWLIDWAAGRAVLTNPCTGAAPVALDAEQRWQALLWQ 200

Query: 200 ----------VELNASSPVG---------------YQIALMRAEAEHLMKGTKGPIIIAG 234
                      +  A +P                  +     A+ E   +     +++ G
Sbjct: 201 ALIRDLGTTDADQPADAPAESAALAVLAGTRPAVHARFVAALAQDEAPQRPLPRRVVLFG 260

Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI--------------TEKSTN 280
            +     T   ++ +A H    + +P         + +                      
Sbjct: 261 HSHLPAQTLEALAALAGHTQVILAVPNPCRFHWADMIDGRELLRSAHRRQPLRNGRDLGA 320

Query: 281 ITSSNTTYSTHPQ--------YSLAKLLDFL--------------DIKREDVKRLGNVSN 318
           +  ++     HP             +LLD                ++ R D+        
Sbjct: 321 LDIADAHAEAHPLLAAWGRQGRDFLRLLDAFEEQLGGAEAGALRGELPRVDLFDDEPGDT 380

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            +      I  +    + + +    +              +      +   E   +   L
Sbjct: 381 LLAQVQARIRDAVPLAEHAALNGPPLDAAAARQRAATDRSIEFHLCHSAMREVEVLHDQL 440

Query: 379 RMSLDE-----NKKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLH 426
              L         +   ++  D  +   +   +           I  DI+   P      
Sbjct: 441 LARLAAAKGSLAPRDIVVMVPDVEVYAPLVRAVFGQYPASDARHIPYDIADLRPRGHHPL 500

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKH--------------PLAKFGFPEKYLSRAKNALE 472
              L  LL    +      +  L+                P          +    +A  
Sbjct: 501 LLALEWLLRITEQRCTASELRELIDVAALANRFGLEGDDLPTLGRWLDGAGVRWGLDAEH 560

Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQ-KNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
             +L              L    +     ++      +             L   I   +
Sbjct: 561 RASLDLAACGEANTWAFGLRRMLLGYAVGDDPAATPGEPWHGIAPYAEVGGLEASIAGAL 620

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             LV             +           L         +   L        L+      
Sbjct: 621 AELVEALQRWWREARTAATPADWDARARALLAAFFRPATEDERLLLAALHDALAQWREAC 680

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            E G           +     +D   ++ +      +     +  R + F  + L G+NE
Sbjct: 681 DEAGYAEAVPLAVLREAWLGTVDEPGLRSRFLAG-GVTFCTLMPMRAIPFQGVCLLGMNE 739

Query: 652 GVWPKN-TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE-NNIP 709
           G +P+     +  L            A +   +      + +    L  +   R   +  
Sbjct: 740 GDYPRRGVRSDFDLLAAPGQRRPGDRARRDDDRMLMLEALLSARAQLHVSWIGRSVRDNT 799

Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
                 L   L       +              +       +   ++ +P      +   
Sbjct: 800 AQPPSVLVAQLRDYLAAGWGRPLVDALSVEHPLQPFSRRYFEQTVEQGEPVDGPADETGD 859

Query: 770 YSFSEIKQLINDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNI 815
            + ++   L                                    + P   D+  L   +
Sbjct: 860 ETGNDTAALRRGLLTYAREWRAAHAREDAAAAASDPLTAAPTPIDRRPAPADQPPLKLAM 919

Query: 816 ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
           +T  ++  +  +  E   +   + D     +       +    L  ++   
Sbjct: 920 LTRFLRNPVADHLNERLGVRLALADEALADDEPLGLHALDESILLRRLVEQ 970


>gi|254252463|ref|ZP_04945781.1| hypothetical protein BDAG_01690 [Burkholderia dolosa AUO158]
 gi|124895072|gb|EAY68952.1| hypothetical protein BDAG_01690 [Burkholderia dolosa AUO158]
          Length = 269

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 83/266 (31%), Gaps = 21/266 (7%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             T   S    L +  Y      +L +  +   +        GT  H       + R++ +
Sbjct: 6    YTVRASSWGALFDCAYRWEGIHLLNMRNVVGLRAAL-----GTAIHAGTAVFDQARLDGS 60

Query: 828  TPEINHLMKQIIDSHFEKEN-LPPHIDIIWRHLFHKISHSFLE-HEEKIQSSIEKIFVNI 885
               ++      +D   + EN   P  D +      +I  S    +  ++    E + V +
Sbjct: 61   GLTVDDAAGAFVDKLHDPENEFDPDRDDLSMSDAERIGLSLTTKYCLEVAPRYEYVAVEM 120

Query: 886  PAK-MAIESIG---IHLTGFAD--RIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQL 937
              + + I+  G   + LTG  D  R+    +G V I D K+G     K     K   PQ+
Sbjct: 121  ETRPLDIDCGGGIIVRLTGTMDRARVRRSATG-VGIADLKSGSSAVQKGAAVTKGHGPQV 179

Query: 938  SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
                   +  +  QI          I LK K   +  T          +  +    LI+ 
Sbjct: 180  GTYELLYEHTTGDQIGDT----AEIIGLKTKGTPEVATAPIANAKRVMVGTEETPGLIQF 235

Query: 998  VTLLQNGEQPFISHLRLSEKSNIQSE 1023
               +    + F  + +          
Sbjct: 236  AADMFRSGR-FYPNPKSLLCDRKYCP 260


>gi|255067628|ref|ZP_05319483.1| exodeoxyribonuclease V, beta subunit [Neisseria sicca ATCC 29256]
 gi|255048102|gb|EET43566.1| exodeoxyribonuclease V, beta subunit [Neisseria sicca ATCC 29256]
          Length = 1213

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 87/885 (9%), Positives = 210/885 (23%), Gaps = 185/885 (20%)

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
            L   +A +      +L +A A++         +I     + P    +   +        +
Sbjct: 376  LDVYDALTDNPQADSLAQAVAQNWRIA-----LIDEFQDTDPLQYEIFRKIF-ISQNKPL 429

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-----DIKREDVKRL 313
                D       +         + ++     ++   +  +    L      + R   +  
Sbjct: 430  FLVGDPKQAIYSFRGADIY-AYLQAAADAQHSYTLATNYRSHAKLINGIGALFRCKNRPF 488

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
                 +        S+S L P  + ++   +       + K      ++        A  
Sbjct: 489  VLDGIDYTEVGAARSESRLSPPQTAIQIRWLNGKDDEVLNK-----DILRRRASEYCADE 543

Query: 374  IAIALRMSLDENKK---------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            IA  L  + +   K           A++    N    V   L   GI   + +   + TT
Sbjct: 544  IAHTLNEAAEGRLKFKGRPVVSGDIAVLVRTFNEGVMVAKALKTRGIQSVLLSRESVFTT 603

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
              +  L +LL+         ++  ++   L  +     Y             R      +
Sbjct: 604  PEALALAALLDYWLNPGQIGSLRFVLSGTLFGYDAQALYQL----------NRNEAELLN 653

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
             ++  +  +           + H+ S    E   LA      +      L      +  +
Sbjct: 654  WINTSAESVAIWRKSGIYAALQHFSSLHGIETGLLARGDERGLTNFHQLLECLSEEEGQS 713

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                ++  W    ++  Q+  + E                                    
Sbjct: 714  LSRAALHQWLNEQISLAQDRSVGESG---------------------------------- 739

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
                + RL   E +         + I+    S+ L +  +    + +    K        
Sbjct: 740  ----LLRLESDEAL---------VKIVTMHASKGLQYPLVYCPFVWDAKDMKPADWQILH 786

Query: 665  SRVMQSDLNL-----------KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
            +    ++L                E+   +    +         +   +    +      
Sbjct: 787  TADHTTELLAKSQLNEEDCIHLADEEMAERLRLLYVALTRAEEQLILYAAHCGDTADSPF 846

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYL-----------DWTRKLDYTTKQPHYKRPKPFPP 762
             +L                 + +              +W R L+   +   +   +  P 
Sbjct: 847  AYLLEGSADSNRADTRQAYDQERKANKALGELQMLKNNWLRFLNNPPEHTDFSFSEDAPQ 906

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRIL------------KLDFIPHFKKDPDRTDR-- 808
              A    +   ++ Q    P   +                 + D     +   D  +   
Sbjct: 907  PAAAQNRHLSDDLYQAAVIPARGFQFIRHTSFTGLSRQVKTRDDEREELQPALDPAETAA 966

Query: 809  ------------------------------GTLFHNIITELIKKRINK------------ 826
                                          G   H ++ +    +  +            
Sbjct: 967  ETERSSETALSVSDDLPNADIHHFPRGANAGVCLHEMLEKFDFAQSAENQSNLIAETLTR 1026

Query: 827  ------NTPEINHLMKQIIDSHFEKENLP--PHIDIIWRHLFHKISHSFLEHEEKIQ--- 875
                   T  +  ++     +    ++L   P    +    F   +  F  H+ +     
Sbjct: 1027 YGFDLLWTDAVKQILDTCRKTRLAAQSLSEIPPERRLPEMGFTLYTEDFKLHDLRRWFAR 1086

Query: 876  --SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA---- 929
              SS+    +    ++  + +   L GF D +       V I DYK+        A    
Sbjct: 1087 ENSSLPPECIEAAERLDFQDVQGFLNGFIDMVCQDLDDLVCIIDYKSNHLGDSAEAYTQQ 1146

Query: 930  -------QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
                         Q  + A A+      +        + Y+ L+ 
Sbjct: 1147 AMNEAVEDHHYYLQALIYAIAVARYFKLRGKPLPKIAIRYLFLRG 1191


>gi|227329722|ref|ZP_03833746.1| exonuclease V subunit gamma [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 906

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/608 (11%), Positives = 149/608 (24%), Gaps = 49/608 (8%)

Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
           +A        L   D   P        + S   T  N       Q     LL        
Sbjct: 31  LAKLKARHRRLHRFDGEQPDETRPLFRDPSQAETLFND---DGKQSINNPLLASWGKLGR 87

Query: 309 DVKRL---------------GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
           D   L                +  N +      I +       +    T     +   + 
Sbjct: 88  DNLYLLAELDSVQEIDAFVESDGENLLQTLQRDILELEDHAVVAVSHETQNTSMQKRLLA 147

Query: 354 KCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSALITADRNLARRVKLEL--- 406
                +      + + E   +   L        +   +   ++ AD +        +   
Sbjct: 148 LDDRSIDFHACHSPQREVEVLHDRLLAMMADDPELMPRDVIVMMADIDSYTPFIQAVFGN 207

Query: 407 --TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEK 462
                 +   IS             + SLL+          +  L++ P    +FG  E+
Sbjct: 208 APDNRYLPFAISDQRARHAHPALQAVISLLDLPTSRFTAEQVLALLEVPALAARFGIQEE 267

Query: 463 YLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEE 515
            L R +  +    +R   +  ++ DL        +                         
Sbjct: 268 GLRRLRLWVVESGVRWGLDDDNVRDLMLPPTGQHTWRFGLTRMLLGYAMDSQVGDWQGVL 327

Query: 516 DKELAVLLVDHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             + +  L+  +   +  L+      +        + DW  L    ++     +      
Sbjct: 328 PYDESSGLIAELAGQLAELLMQIHHWRQRLSQPRVLVDWLPLCRELIETFFDADSETEAA 387

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           L   E+          +      +  +     D ++R +D E +  +     ++     +
Sbjct: 388 LALVEKQWQYVIGMGTMAHYPQQVPISR--LRDELSRRLDQERLSQRFLAG-SINFCTLM 444

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
             R + F  + L G+N+G++P+      F   +M   +      +         E     
Sbjct: 445 PMRSIPFKVVCLLGMNDGIYPRTLPPLGF--DLMGRKIKRGDRSRRDDDRYLFLEALLSA 502

Query: 695 RH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
           +H L  +   R     T     +  L+         +    G   LD     +   K   
Sbjct: 503 QHKLYISYIGRSIQDNTRRYPSV--LVSELTEYIAQSYVLPGDEALDIDSSAERVVKHLC 560

Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
               +            S  +      +  A   ++                +DR     
Sbjct: 561 ---REHSRMPFDANNFLSSPQPLSFAAEWLAAANQKGEAQPDFDREALSERASDRDVSLD 617

Query: 814 NIITELIK 821
           + +    +
Sbjct: 618 D-LKRFYR 624


>gi|330858434|ref|YP_004414787.1| Gp37 [Propionibacterium phage PAD20]
 gi|260066552|gb|ACX30831.1| Gp37 [Propionibacterium phage PAD20]
          Length = 309

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 56/260 (21%), Gaps = 50/260 (19%)

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
             +P     P   S+S + Q          +                 T  G+  H+I  
Sbjct: 4   AQYPKTINHPGHISYSSLSQWAECGEKWRLQHGYH-----TQHHTWYATIAGSAIHHITE 58

Query: 818 E----LIKKRINKNTPEINHLMKQIIDSHFE--------------------KENLPPHID 853
           +    L         P+     K I  +                       +   P   D
Sbjct: 59  QYDLHLYNPAEYPALPDKLASFKNIFATQVALAESEGTEIKPSGRICKNMCESGGPHKKD 118

Query: 854 IIWRHLF-HKISHSFLEHEEKIQSSIEKI-----FVNIPAKMAIESIGIHLTGFADRIDL 907
             W  ++       +          I  I      +  P +  +      + G+ DRI  
Sbjct: 119 YNWWMMYGPTFVDRWKTWRRNHPEYITAILDGKPGIEYPVETTLPDGT-QIVGYIDRIFT 177

Query: 908 LKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
               G   I D KTG  P           QL      L            V    +    
Sbjct: 178 DTDTGETFILDLKTGRLPAD-------SMQLHTYRYML------NQHGNDVTKGMFWTPA 224

Query: 967 QKFKIDCITNDKKKYSADEL 986
                D            +L
Sbjct: 225 TSRNDDKSPTQGTSTELYDL 244


>gi|92113296|ref|YP_573224.1| exodeoxyribonuclease V, beta subunit [Chromohalobacter salexigens DSM
            3043]
 gi|91796386|gb|ABE58525.1| exodeoxyribonuclease V, beta subunit [Chromohalobacter salexigens DSM
            3043]
          Length = 1269

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 101/913 (11%), Positives = 203/913 (22%), Gaps = 86/913 (9%)

Query: 156  IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT--ERLVELNASSPVGYQIA 213
            +D +      ++ L                   K     W   + L +L+A+        
Sbjct: 345  LDELAETATPFDVLAPRLLAHARDTVAAMFAAEKRRQGLWEFGDLLQDLDAALDPEAAPE 404

Query: 214  LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP----NGAIVLPGLDCHIPTA 269
                 A  + +     +I      + P   R+ S +   P    +   +L   D      
Sbjct: 405  AAWRLAGRIRQALPVALI-DEFQDTDPLQYRIFSRIYRAPEADADTTTLLMIGDPKQAIY 463

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLA----------KLLDFLDIKREDVKRLGNVSNE 319
             +     ++       T        +            +L           +        
Sbjct: 464  AFRGADIETYLAARRETPSRFTLTRNFRSSVAMVEAVNRLFARHPTPFGSDEIPFVEVAA 523

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
               ++ + +                  +   + Q   +  A  E     E          
Sbjct: 524  KGQKARLCNADGQEVAALGAWWPGDERHAKADYQASMASAARAEVQRALEGGWHFVDEKG 583

Query: 380  MSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIF 438
               D      A++    + A  V+  L   GI  + +S    +  T  +  L  L  A+ 
Sbjct: 584  GQRDVRPADIAILVRKGSEALAVRRALAEGGIRSVYLSERASVFDTALAFELLQLFEAVA 643

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
            +      +   +   L            A        +    + +     + ++    A 
Sbjct: 644  QPRQDARLKAALATRLLNDNPAALETLLADELAWEREVERFADYHRQWQRRGVLPMLRAV 703

Query: 499  QKNNTHVPHWQSRLSEE----DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
             ++        +R   E    D      L   +   +          +      +     
Sbjct: 704  MRDFRVAERMGARDDGERALTDLLHLGELAQTVSARLDGEHALLRWWHRALVEGTRQLDA 763

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFE-EEGKTLSSLFSKIIETGSCIKANAIEWID------ 607
            +     L++          +     E    L                  +EW D      
Sbjct: 764  EAVSQRLESDEDLVKVVTIHKAKGLEYPIVLLPFVCDYRPAEPERGTGLLEWRDPRHGRA 823

Query: 608  -IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             +     +      +      + +L    +R  +   L +  L  G           L R
Sbjct: 824  LVHGADDEQLAAAERARLDEDVRLLYVALTRAAHACRLGVAHLGRGRGTSGCLHETALGR 883

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR---------SLRENNIPTIASRWLQ 717
            ++  + + +  +     AA     A         R         S R  N       W+ 
Sbjct: 884  LLGCEADDQAHDVRERLAAALSVEACPAPPGHRLRVRHALPAVASARRFNGGIDDDWWIA 943

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS---- 773
                L          +      D    LD    +     P+P                  
Sbjct: 944  SYSALIVDARLAPAGEEASMTWDAPATLDVEVSREQDPVPRPAVRTLRDFPRGPRPGTFL 1003

Query: 774  ----EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
                E   L       Y   + +L          +      L   + T L          
Sbjct: 1004 HGLLEAVDLDRLREPAYRDELQRLVSTRLHLGGFEPEWAPLLLDWLCTALPTPFPGHAGT 1063

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
            EI            E           W      +  +F     +                
Sbjct: 1064 EIRLDGLAAWRPELE---FWLPAHQAWSAPLDALVSAF-----EPLPEPRPRLAPRKLNG 1115

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNPKK--------ETAQKLIDPQLS 938
                    L GF D +   + G   + D+K+   GD P             +   D Q  
Sbjct: 1116 M-------LKGFIDLVFEAEDGRWYVLDWKSNHLGDAPADYRPEALAEAMVEHRYDLQYV 1168

Query: 939  LEAAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            L   AL     +++D       +    Y+ L+           +++           + L
Sbjct: 1169 LYVLALHRLLTARLDDYDYDTHMGGACYLFLRGVDGTPGQGVFQRRP---------ERRL 1219

Query: 995  IEIVTLLQNGEQP 1007
            IE +     G+  
Sbjct: 1220 IEALDAWLEGDTG 1232


>gi|294508356|ref|YP_003572414.1| DNA helicase II [Salinibacter ruber M8]
 gi|294344684|emb|CBH25462.1| DNA helicase II [Salinibacter ruber M8]
          Length = 1227

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 74/710 (10%), Positives = 171/710 (24%), Gaps = 85/710 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + + +   T+RA Q+L S    + G ++       ++     +   A    +   +  + 
Sbjct: 194 SRLVLVTFTRRAAQQLTSRLAALVGPEAQ-HVRAGTIHHFCYKTLRAHSAPAGVPDDFI- 251

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                             + D + D + +           A  L              + 
Sbjct: 252 -----------------VVDDTVTDAFWQRWYEAHERWCEANDL--------HSYRQVKT 286

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
               +  L  +            L    + + E L +  A       +        H   
Sbjct: 287 HVSRIK-LGIDTVSGR-------LTEGLRAYGEMLGDRGALDFDDLLVKTRDLLRNHPDV 338

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     +++     + P    ++  +     GA +    D       +      + 
Sbjct: 339 RADLVDETRAVLVDEFQDTDPVQFDIIRRLGEA--GAHLYCVADDDQSVYRFRGARPAN- 395

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                           L + +D  D   E   R    +N    RS+            D 
Sbjct: 396 ----------------LRRYIDRFDCSAERGTRHVLTTNYRSNRSIYAVA----EAVLDA 435

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397
                    I         V L+  D+   E   +   LR  LD+   +   A++T    
Sbjct: 436 DERLKQRGDIRTSDAGTQPVQLVACDDPEAERTHVLRQLRDWLDDGAERSDLAVLTRWNR 495

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
               ++    R G+  + S    L  T  +  L +LL  +        +   +   L   
Sbjct: 496 RLAALERACLRAGLACETSQSEALLDTPPAQKLHALLRVVDARRRGRPLDAPMTE-LLSH 554

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
             P+  ++R ++  E         +     + +    R A   + T              
Sbjct: 555 LLPDDTMARLRDFGERSMPDATLWTAFQTVVSNEQARRSAGLDSATDRLDQTYATITNLL 614

Query: 518 EL-----------AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC--LQNV 564
           +                +  +   +  L  Y           S+     +       Q  
Sbjct: 615 QNTQEDGLTIGAFTRTALRQLGDPLQLLRRYADTLTDPASRPSVRQAGTVLDEWRRAQAR 674

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                     L      +        +               ++   L      +     
Sbjct: 675 DARAGDPPRLLLHHRTPQITRLWRQLVRRALDLETDPPAPLPEMQEALFARPADEGIPPL 734

Query: 625 SSTLFILGTLESRLLNF--DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
            +   +L      LL +   T    G  +       A +  L    ++ L +   + ++ 
Sbjct: 735 GADDVVLTNDLEALLRWAERTGAFSGSTDTPQILLLAPDGALPSGQKTLLGVDPDDVHVV 794

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                F     +  +   + L+  + P+         +++       + +
Sbjct: 795 DPESTFH----SPSVRLVKLLQMTSGPSAPEPLFPEYVMVDLEATSTDPR 840


>gi|17549495|ref|NP_522835.1| ATP-dependent DNA helicase II protein [Ralstonia solanacearum
           GMI1000]
 gi|17431748|emb|CAD18427.1| probable atp-dependent dna helicase II protein [Ralstonia
           solanacearum GMI1000]
          Length = 710

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 78/738 (10%), Positives = 180/738 (24%), Gaps = 117/738 (15%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TL     +   N      + +   ++RA  EL S    +           ++L      
Sbjct: 55  HTLGWRVAHLVANGADPQRILLLTFSRRAASELSSRAGHLLA---------RALQGSAGA 105

Query: 88  KFTADLLLSYNLNPPVS----NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
           +  A       L    +      + L E A  I +  +       D      +       
Sbjct: 106 RSAAGTAYRTALPWAGTFHGIGARLLREYAERIGLAPDFTIHDRSDAADLLNVVRHELNL 165

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
           +       L      I +     E       +++  W  +    L+     + E     +
Sbjct: 166 STKERRFPLKQTCLAIYSRAINAESPLDAVLKQHFPWCAMWQAQLRTLFDAYVEAKQAQH 225

Query: 204 ASSP----VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                   + +   +  A     +      I++     +    + ++  +   P+G  + 
Sbjct: 226 ILDYDDLLLYWHAMVADAGLAAEIGARFDHILVDEYQDTNRLQSSILRAL--RPDGRGLT 283

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       +   T ++      + T   H           L+      + +   SN 
Sbjct: 284 VVGDDAQSIYAFRAATVRNILDFPRHFTRPAHT--------VLLERNYRSTQPILEASN- 334

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
             G     ++ F     +D  +T                  LI   +E E+A  +A  + 
Sbjct: 335 --GVMRFATERFAKTLWTDRASTHRPR--------------LISVRDEAEQARCVAEQVL 378

Query: 380 MSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
              +     K  A++    + +  +++EL R  I      G+      H   + S+L   
Sbjct: 379 RHREGGLALKSQAVLFRTASHSAPLEIELARRNIPFVKYGGLKFLEAAHVKDVLSVLRWA 438

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
               + +A   +++                                 +         R+ 
Sbjct: 439 ENPRNRIAGFRVIQ--------------------------------LLPGAGPATAARVL 466

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                   P            LA      ++  +  L   K N        ++  W    
Sbjct: 467 DTMAEAADPVAALLAHAPPARLAGDWA-ALMTLMATLRAPKDNATWAGELEAVGAWYAPH 525

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
           +  L +        L  L        +++ ++      + +  +  E        +  + 
Sbjct: 526 MERLHDDAAVRQGDLDQL------ARMAATYASRERFLTEMTLDPPE--------LTSDE 571

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                     L +     S+   +  + L    +G  P              +DL   + 
Sbjct: 572 SGEPYRDEDYLILSTIHSSKGQEWKAVYLLNAVDGCMP--------------ADLGAGSH 617

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
           ++   +    +      R  +            +  R+        G       + R   
Sbjct: 618 DELEEERRLLYVAMTRARDHL---------DILVPQRFYMTQQTPNGDRHLYASRTRFIP 668

Query: 738 YLDWTRKLDYTTKQPHYK 755
                   +     P   
Sbjct: 669 -PALLPLFEACAWPPPEP 685


>gi|218290879|ref|ZP_03494943.1| hypothetical protein AaLAA1DRAFT_2529 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239146|gb|EED06348.1| hypothetical protein AaLAA1DRAFT_2529 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 306

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 64/240 (26%), Gaps = 35/240 (14%)

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
             T ++S I          +    L+L             D G+ FH  +    K +  +
Sbjct: 1   METLTYSRISARARCAMREHLHYELRLRPRQIQW----SLDIGSAFHVAMETWNKGQSEE 56

Query: 827 NTPEINHLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                       +    E   E     +  I   +  + +        +     E + V 
Sbjct: 57  EAVAAALARLNEVAERIEDPTEIEKLPVKSIQIEVMVRAA-------IRRFPKYEPVVVE 109

Query: 885 IPAKMAI-------ESIGIHLTGFADRIDLLKSGFVDITDYK-TGDNPKKETAQKLIDPQ 936
               + I        S    L G  D +     G   I +YK T  N ++   +  +D Q
Sbjct: 110 HEFSVPIINPLTGRASRTFRLAGKIDLVVKTPGGRYWIAEYKTTSQNLEQFRMRYGLDSQ 169

Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
           +S    A +      I              +   I  I   + +    E  ++    L  
Sbjct: 170 VSYYTMAAREALGIPI--------------EGSLIRVIVKTRTEPRRGETLDEYRDRLEA 215


>gi|71405697|ref|XP_805446.1| Tb-291 membrane-associated protein-like [Trypanosoma cruzi strain CL
            Brener]
 gi|70868858|gb|EAN83595.1| Tb-291 membrane-associated protein-like, putative [Trypanosoma cruzi]
          Length = 1302

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 67/808 (8%), Positives = 164/808 (20%), Gaps = 22/808 (2%)

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
              +E+  A  L     +  ++       LA      R       + L  E+     +  A
Sbjct: 290  FFQEEAEARRLAEEAESRCLAEEAESRRLAEEAESHRLAEEAESRRLAEEAESRRLVEEA 349

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
             A  LA            EE +   L              +    + A         E  
Sbjct: 350  EARRLA------------EEAEARRLAEEAESHRLTEEAESRRLAEEAESRRLAEEAEAR 397

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
              +    ++A          +  +          +  A +  ++  A     A       
Sbjct: 398  RLAEEARRLAEEAEARRLAEEAHRLAEEAEARRLAEEAESHRLTEEAESRRLAEEAESRR 457

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                        E      +         + + ++ L      R   +    ++ E   R
Sbjct: 458  LAEEAEARRLAEEAEARRLAEEAEARRLAEEAESRRLAEEAEARRLAEEAHRLAEEAEAR 517

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI-AIALRMSL 382
             +                    E +   + +      L E    R  A    A  L    
Sbjct: 518  RLAEEAEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEA 577

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
            +  +                +                       +        A  +   
Sbjct: 578  ESRRLAEEAEARRLAEEAEARRLAEEAESRRLAEEAESRRLAEEAESRRLAEEAESRRLA 637

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRA--KNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
              A +  +          E+    A    A  L      +   +  + + L  +  A + 
Sbjct: 638  EEAESRRLAEEAEARRLAEEAHRLAEEAEARRLAEEAEARRLAEEAESRRLAEEAEARRL 697

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                    +   +    E A  L +                        +++  +     
Sbjct: 698  AEEARRLAEEAEARRLAEEAHRLAEEAESRRLAEEAEARRLAEEAEARRLAEEARRLAEE 757

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
             +   L E  +   L  E E + L+                  E    +    +   +  
Sbjct: 758  AEARRLAEEAEARRLAEEAEARRLAEEAESRRLAEEAEARRLAEEARRLAEEAESRCLAE 817

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
            + E         +           +          +               L  +   + 
Sbjct: 818  EAESHRLAEEAESHRLAEEAESRRLAEEAESRRLVEEAEARRLAEEAEARRLAEEAEARR 877

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
            + + A    +             R       + R  +    L        L +      +
Sbjct: 878  LAEEAESHRLTEEAE-------SRRLAEEAESRRLAEEARRLAEEAEARRLAEEAHRLAE 930

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                     +    +  +              +E  +         ARR+ +        
Sbjct: 931  EAESRRLAEEAEARRLAEEAEARRLAEEARRLAEEAEARRLAEEAEARRLAEEAEARRLA 990

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
            ++ +          +  E   +R+ +         +       E+               
Sbjct: 991  EEAESRRLAEEARRLAEEAEARRLAEEAESRRLAEEAEARRLAEEARRLAEEARRLAEEA 1050

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAK 888
             +++     H    ++   ++     A+
Sbjct: 1051 RRLAEEAESHRLTEEAESRRLAEEAEAR 1078



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 67/793 (8%), Positives = 167/793 (21%), Gaps = 5/793 (0%)

Query: 87   EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
            E                +  +RL E A    +        + +      L+         
Sbjct: 454  ESRRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAESRRLAEEAEARRLAEEAHRLAEE 513

Query: 147  WLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
              A+ LA+  +     EE +   L      +       A    + A         E    
Sbjct: 514  AEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAEARRL 573

Query: 206  SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
            +       L        +        +A    S        S        +  L      
Sbjct: 574  AEEAESRRLAEEAEARRLAEEAEARRLAEEAESRRLAEEAESRRLAEEAESRRLAEEAES 633

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
               A        +    +       H     A+     +            S  +   + 
Sbjct: 634  RRLAEEAESRRLAEEAEARRLAEEAHRLAEEAEARRLAEEAEARRLAEEAESRRLAEEAE 693

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI-AIALRMSLDE 384
                +      ++      L  +   + +      L E    R  A    A  L      
Sbjct: 694  ARRLAEEARRLAEEAEARRLAEEAHRLAEEAESRRLAEEAEARRLAEEAEARRLAEEARR 753

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
              +++           R   E        + +    L+    +  L      + +  +  
Sbjct: 754  LAEEAEARRLAEEAEARRLAEEAEARRLAEEAESRRLAEEAEARRLAEEARRLAEEAESR 813

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
             +A   +            L+    +  L     ++   +  + + L  +  A +     
Sbjct: 814  CLAEEAESHRLAEEAESHRLAEEAESRRLAEEAESRRLVEEAEARRLAEEAEARRLAEEA 873

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCIT--PLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                 +  +E  +         + +      L               +++         +
Sbjct: 874  EARRLAEEAESHRLTEEAESRRLAEEAESRRLAEEARRLAEEAEARRLAEEAHRLAEEAE 933

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
            +  L E  +   L  E E + L+    ++ E     +         +    +   +  + 
Sbjct: 934  SRRLAEEAEARRLAEEAEARRLAEEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEA 993

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
            E          L                         +    +R +  +      E    
Sbjct: 994  ESRRLAEEARRLAEEAEARRLAEEAESRRLAEEAEARRLAEEARRLAEEARRLAEEARRL 1053

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                +              +              +RL         +   +R     +  
Sbjct: 1054 AEEAESHRLTEEAESRRL-AEEAEARRLTEEAEARRLAEEARRLAEEAEARRLAEEAEAR 1112

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
            R  +        +  +         R    +E ++L  +   +      +       +  
Sbjct: 1113 RLTEEAESHRLAEEARRLAEEAEARRLAEEAEARRLAEEARRLAEEAEARRLAEEAHRLA 1172

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
             +   R          L ++   +   E    +    ++    E      +        +
Sbjct: 1173 EEAESRRLAEEAEARRLAEEAEARRLAEEARRLAGEAEARRLAEEARRLAEEAEARRLAE 1232

Query: 863  ISHSFLEHEEKIQ 875
             +H   E  E  +
Sbjct: 1233 EAHRLAEEAEARR 1245



 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 70/777 (9%), Positives = 156/777 (20%), Gaps = 12/777 (1%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED-- 168
             LA      R       + L  E+        A A  LA+    + +  E      E   
Sbjct: 362  RLAEEAESHRLTEEAESRRLAEEAESRRLAEEAEARRLAEEARRLAEEAEARRLAEEAHR 421

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
            L      +       +    + A         E    +       L        +     
Sbjct: 422  LAEEAEARRLAEEAESHRLTEEAESRRLAEEAESRRLAEEAEARRLAEEAEARRLAEEAE 481

Query: 229  PIIIAGSTGSIP-----ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
               +A    S          RL          A      +      +      +     +
Sbjct: 482  ARRLAEEAESRRLAEEAEARRLAEEAHRLAEEAEARRLAEEAEARRLAEEAEARRLAEEA 541

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                 +   +              E+ +           R    +++    + ++ R   
Sbjct: 542  EARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAESRRLAEEAEARRLAEEAEARRLA 601

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
                     ++  S     EA++ R    + +  L    +  +                 
Sbjct: 602  EEAESRRLAEEAESRRLAEEAESRRLAEEAESRRLAEEAESRRLAEEAEARRLAEEAHRL 661

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
             E        + +    L+    S  L     A     +   +A   +            
Sbjct: 662  AEEAEARRLAEEAEARRLAEEAESRRLAEEAEARRLAEEARRLAEEAEARRLAEEAHRLA 721

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                   L   A              +    R+A +     +          ++  A  L
Sbjct: 722  EEAESRRLAEEAEARRLAEEAEARRLAEEARRLAEEAEARRLAEEAEARRLAEEAEARRL 781

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
             +                      L+    ++      ++  L E  +   L  E E + 
Sbjct: 782  AEEAESRRLAEEAEARRLAEEARRLAEEAESRCLAEEAESHRLAEEAESHRLAEEAESRR 841

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            L+                  E  +      + E  +   E  S          RL     
Sbjct: 842  LAEEAESRRLVEEAEARRLAEEAEARRLAEEAEARRLAEEAESHRLTEEAESRRLAEEAE 901

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
                        +            +     ++        A         R L      
Sbjct: 902  SRRLAEEARRLAEEAEARRLAEEAHRLAEEAESRRLAEEAEARRLAEEAEARRLAEEARR 961

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ--CYLDWTRKL-DYTTKQPHYKRPKPF 760
                              L        L +  +     +  R+L +    +   +  +  
Sbjct: 962  LAEEAEARRLAEEAEARRLAEEAEARRLAEEAESRRLAEEARRLAEEAEARRLAEEAESR 1021

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
               E         E ++L  +   +        +     +   +   R          L 
Sbjct: 1022 RLAEEAEARRLAEEARRLAEEARRLAEEARRLAEEAESHRLTEEAESRRLAEEAEARRLT 1081

Query: 821  KKRINKNTPEINHLM--KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
            ++   +   E    +  +       E+       +    H   + +    E  E  +
Sbjct: 1082 EEAEARRLAEEARRLAEEAEARRLAEEAEARRLTEEAESHRLAEEARRLAEEAEARR 1138



 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 73/814 (8%), Positives = 177/814 (21%), Gaps = 19/814 (2%)

Query: 79   KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
            +   +       A+          ++       LA      R       + L  E+    
Sbjct: 398  RLAEEARRLAEEAEARRLAEEAHRLAEEAEARRLAEEAESHRLTEEAESRRLAEEAESRR 457

Query: 139  PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
                A A  LA+           EE +   L      +       A    + A     E 
Sbjct: 458  LAEEAEARRLAEEAEA---RRLAEEAEARRLAEEAESRRLAEEAEARRLAEEA-HRLAEE 513

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                  +     +     AEA  L +  +   +   +     A       +A       +
Sbjct: 514  AEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAEARRL 573

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
                             E      +         + + ++ L      R   +   +   
Sbjct: 574  ------AEEAESRRLAEEAEARRLAEEAEARRLAEEAESRRLAEEAESRRLAEEAESRRL 627

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                 S  +++       ++      L  +   + +      L E    R  A       
Sbjct: 628  AEEAESRRLAEEAESRRLAEEAEARRLAEEAHRLAEEAEARRLAEEAEARRLAEEAESR- 686

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
            R++ +   ++ A            +          + +    L+    +  L     A  
Sbjct: 687  RLAEEAEARRLAEEARRLAEEAEARRLAEEAHRLAEEAESRRLAEEAEARRLAEEAEARR 746

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
               +   +A   +          + L+    A  L     ++   +  + + L  +    
Sbjct: 747  LAEEARRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAESRRLAEEAEARRLAEEARRL 806

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
             +        +   S    E A             L     ++       +     +   
Sbjct: 807  AEEAESRCLAEEAESHRLAEEAESHRLAEEAESRRLAEEAESRRLVEEAEARRLAEEAEA 866

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              L                    +  S   ++  E+    +       +   R +  E  
Sbjct: 867  RRLAEEAEARRLAEEAESHRLTEEAESRRLAEEAESRRLAEEARRLAEEAEARRLAEEAH 926

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
            +   E  S          RL                 +               L  +   
Sbjct: 927  RLAEEAESRRLAEEAEARRLAEEAEARRLAEEARRLAEEAEARRLAEEAEARRLAEEAEA 986

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
            + + + A    +A   R L      R       + R  +        +    L +  +  
Sbjct: 987  RRLAEEAESRRLAEEARRLAEEAEARRLAEEAESRRLAEEAEARRLAEEARRLAEEARRL 1046

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
             +  R+L    +            L  +      +E  +       +        +    
Sbjct: 1047 AEEARRLAEEAESHRLTEEAESRRLAEEAEARRLTEEAEARR----LAEEARRLAEEAEA 1102

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
             +   +   R          L ++            + +  ++    E      +     
Sbjct: 1103 RRLAEEAEARRLTEEAESHRLAEEARRLAEEAEARRLAEEAEARRLAEEARRLAEEAEAR 1162

Query: 859  LFHKISHSFLEHEEKIQ----SSIEKIFVNIPAK 888
               + +H   E  E  +    +   ++     A+
Sbjct: 1163 RLAEEAHRLAEEAESRRLAEEAEARRLAEEAEAR 1196



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/590 (9%), Positives = 122/590 (20%), Gaps = 4/590 (0%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
             LA      R       + L  E+        A A  LA+    + +  E      E   
Sbjct: 660  RLAEEAEARRLAEEAEARRLAEEAESRRLAEEAEARRLAEEARRLAEEAEARRLAEEAHR 719

Query: 171  ALKNEKYGMWWLLA-ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
              +  +       A A  L   ++           +     +     AEA  L +  +  
Sbjct: 720  LAEEAESRRLAEEAEARRLAEEAEARRLAEEARRLAEEAEARRLAEEAEARRLAEEAEAR 779

Query: 230  IIIAGSTGSIPATARLMSTVAN-HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
             +   +     A       +A      A                   E  ++  +     
Sbjct: 780  RLAEEAESRRLAEEAEARRLAEEARRLAEEAESRCLAEEAESHRLAEEAESHRLAEEAES 839

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                + + ++ L      R   +            +  +++       ++   +  L  +
Sbjct: 840  RRLAEEAESRRLVEEAEARRLAEEAEARRLAEEAEARRLAEEAESHRLTEEAESRRLAEE 899

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
              + +       L E    R  A         +      + A        A   +L    
Sbjct: 900  AESRRLAEEARRLAEEAEARRLAEEAHRLAEEAESRRLAEEAEARRLAEEAEARRLAEEA 959

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
              +  +  A           +                        LA+     +    A+
Sbjct: 960  RRLAEEAEARRLAEEAEARRLAEEAEARRLAEEAESRRLAEEARRLAEEAEARRLAEEAE 1019

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
            +          + + +   L           +             E +        +   
Sbjct: 1020 SRRLAEEAEARRLAEEARRLAEEARRLAEEARRLAEEAESHRLTEEAESRRLAEEAEARR 1079

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                        +       + +          +     E  +L         +  +   
Sbjct: 1080 LTEEAEARRLAEEARRLAEEAEARRLAEEAEARRLTEEAESHRLAEEARRLAEEAEARRL 1139

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            ++  E     +       +   R +  E  +   E  S          RL   +      
Sbjct: 1140 AEEAEARRLAEEARRLAEEAEARRLAEEAHRLAEEAESRRLAEEAEARRL--AEEAEARR 1197

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
            L E                    L  +   + + + AH        R L 
Sbjct: 1198 LAEEARRLAGEAEARRLAEEARRLAEEAEARRLAEEAHRLAEEAEARRLA 1247


>gi|167902084|ref|ZP_02489289.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           NCTC 13177]
          Length = 825

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 77/809 (9%), Positives = 173/809 (21%), Gaps = 64/809 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVEL-NASSPVGYQIALM 215
             +W          + +          A D     +  W   L EL ++  P  ++    
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 216 RAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
                              + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--- 387
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLAP 381

Query: 388 --------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                     A      +             I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                 +   ++             + A  A   +     +     +             
Sbjct: 442 DVGAPELVEWLR-------------ADAVAARYGIDATALETVQTWLAASGARRGLAPDA 488

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               +      R +  D    + L   +     P+ T+     +  G   +         
Sbjct: 489 AEPPNPAVPAPRHTFADALTRLFLGYAMPDGAAPVSTWLPIAGAEGGEAELLGRLARFTD 548

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI------------------KAN 601
            L        R L    + +      + F       +                     A 
Sbjct: 549 DLDGFARRIARDLTPQGWGDVFADALARFFDSGPAFADALSGVRDALDAMLAAMAEGAAG 608

Query: 602 AIEWIDIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           A     ++   +      P         +        R L +  + L G+++GV P    
Sbjct: 609 AALPAAVVRAGLAAALDDPARGGVPWGGVTFSSLTSLRGLPYRIVCLIGMDDGVLPSLAR 668

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
            + F    + + L  +           D  +A   R LI        +   +    L   
Sbjct: 669 ADEFDLMAVFAKLGDRQRRDDERNLFLDLLLAARERLLIAYTGRSIRDNAPLPPAALVDE 728

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
           L+                     R          +      P         S + + +L+
Sbjct: 729 LLDHLAAASAGPDAPPDAVDAARRAFVIEHPLQPFSAEYFAPGGALFTYDASRATLARLL 788

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDR 808
            +     AR           ++     D 
Sbjct: 789 AEGARTQARPFFAAPLPAEPEQPVAFADF 817


>gi|291008803|ref|ZP_06566776.1| RecB family exonuclease [Saccharopolyspora erythraea NRRL 2338]
          Length = 279

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 44/154 (28%), Gaps = 10/154 (6%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
             + + +      P       + +             +  G + HN++    + R  K T
Sbjct: 19  RVTPARLANWAQCPRKYRMTYLDRPTP--PRAGAWAHSTLGAVVHNVLRAFFELRPGKRT 76

Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
           PE   ++ +         +              +       + E +      + V     
Sbjct: 77  PEQVPVLLRRYWKSDGFADAEQVARHR-----RRAQEWLTSYVEGLDPDAAPVAVERWVS 131

Query: 889 MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
             +    I   G  DR+D    G + + DYKTG 
Sbjct: 132 APM--GSIIAEGRVDRLDERG-GELVVVDYKTGR 162


>gi|237742074|ref|ZP_04572555.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|229429722|gb|EEO39934.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
          Length = 902

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/432 (13%), Positives = 133/432 (30%), Gaps = 63/432 (14%)

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L  L  ++  + N +   +   +    PK    N   +   +  L LKT E  I    +
Sbjct: 479  QLKDLDLIKYSVKNIENPAVIYADSQTLPKIKLNNNLFTEQQKIKLGLKTNEDEILIQKY 538

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
             F     + + I   SL +++     S ++   +       +  L+        + + + 
Sbjct: 539  RFFQNLLSLNKIDIYSLVDSDNNIDFSAFVYEFINK-----YTALENNTDNLKQYFKAIY 593

Query: 747  YTTKQPHYKRPKP--------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
               K  ++ + +             +         +  +L  +    +  +I  ++    
Sbjct: 594  TKEKTDNFFKDETFFRAYSKDKSDFKDNILKIGAYDYIELKKNETFFFLDKICGIESSDE 653

Query: 799  F--KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK--QIIDSHFEKENLPPH--- 851
                        G + H  + E+ ++          +L+    +I+ + ++         
Sbjct: 654  IVADIGISAKVLGNILHKTLEEIFRENWKNILQSSENLLISNNVIEEYLKRNIWKEELKI 713

Query: 852  -------IDIIWRHLFHKISHSF--LEHEEKIQSSIEKIFVNIPAK------MAIESIGI 896
                   I+ +           F  + +EE     I +I     +K      +  + I +
Sbjct: 714  EIFMKNYINEVLTSRLVSNIEKFFKILYEELKGEKILRIEAEKKSKTQDKAYLKYDEIEV 773

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID-CR 955
             L G AD +         I D+KTG    K+        QL   A       F   D   
Sbjct: 774  FLNGRADLLIETS-KARYIVDFKTGG--YKKE-------QLEFYAIM-----FYGSDNSL 818

Query: 956  KVANLFY--IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013
             V +  Y         + +      +K+  D+L EK      E++      +     ++ 
Sbjct: 819  PVYSTVYNFWN-----EQEAKNFKFEKHLIDKLPEK-DSQFKELLIEFFKNK----YYVL 868

Query: 1014 LSEKSNIQSEYD 1025
              + +  +S+YD
Sbjct: 869  PKKSALKESDYD 880


>gi|310643059|ref|YP_003947817.1| recombination helicase adda [Paenibacillus polymyxa SC2]
 gi|309248009|gb|ADO57576.1| Recombination helicase AddA [Paenibacillus polymyxa SC2]
          Length = 1339

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 73/726 (10%), Positives = 189/726 (26%), Gaps = 68/726 (9%)

Query: 213  ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
             L+ ++A    K     +++     +      ++  V+    G   +   D       + 
Sbjct: 399  KLLPSDAALEYKAQFDEVLLDEYQDTNTVQEDIVRLVSREEPGNRFM-VGDVKQSIYRFR 457

Query: 273  TITEKSTNITSSN---TTYSTHPQYSLAK-------LLDFLDIKREDVKRLGNVSNEMYG 322
                                      LA+       ++D +++    +  +     E   
Sbjct: 458  LAEPGLFLNKYQRYGMQEQEDGFLIDLARNFRSREEVVDAVNLVFRQIMSVDVAEIEYDE 517

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA---------------------L 361
            R+ ++  +  P + ++         ++  + K    ++                     L
Sbjct: 518  RAWLVHGASYP-EKTEQEAASAYAPELLLVDKGGRGLSETLELPEMGDESALQESELAEL 576

Query: 362  IEADNEREEAISIAIALRMSLDENKKK------------------SALITADRNLARRVK 403
             E +  + EA +IA  ++    +  +                     ++    ++   + 
Sbjct: 577  AELETAQLEARAIAQRIKELTGDTGQPLLIYDRGLKAMRPAVYGDIVILLRSASVWAPLI 636

Query: 404  -LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
              EL   GI                 ++ SLL+ I      + +A++++ P+      E 
Sbjct: 637  VEELRLEGIPASGEQTTGFFKATEVEVMLSLLHIIDNPQQDIPLASVLRSPIVGLTEDEL 696

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               R +    L        +      +S+        + +       S      ++    
Sbjct: 697  AQIRLEKPDGLFYDALLAAAETEQVDQSVKGTSADVLEMDLFTEDSLSPPHSVHRDDGNT 756

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            L   +   +  L  ++        +  I +  + T   L  V                  
Sbjct: 757  LSARLRSFLRNLDAWRQEARQGSLSALIWNVLEET-GYLDWVGGLPGGSQRQSNLRALYD 815

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
                   +   +   +         +  R  D  ++    E    + I+   +S+ L F 
Sbjct: 816  RARQY--ETSTSNRGLFRFLTFISRLRERGGDLGSISGGTEPDQAVRIMTIHKSKGLEFP 873

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
             + + G  +    ++      + + +      K  E+    +          R       
Sbjct: 874  VVFIAGTAKMFNQQDLNAPFLMHKEL--GFGPKYVEEQNRVSYPTLPNLAIRRRSQL--- 928

Query: 703  LRENNIPTIASRWLQRLLVLGG-TDFFDNLKKRGQCYLDWTRKLDY--TTKQPHYKRPKP 759
                    +    L R       T    +L  R   +       +           R   
Sbjct: 929  ELLAEEMRVLYVALTRPREKLIMTGTVKDLASRAAGWARAKEHTETVLPDYILAAGRSYL 988

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR--GTLFH-NII 816
                 A  R  S + +++   D    Y    L+      +      ++   G+  + +  
Sbjct: 989  DWVGPALIRHPSATSLRKAAGDQEGDY--HRLEHMPGADWLFKIVASETLSGSRVNSDRE 1046

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
             E+  +   K T  + ++    +D   E +               K + +    E K   
Sbjct: 1047 EEVSAEERQKKTEALRNVELIELDEESETDIAAALSWTYPYERAGKTAANTSVTEMKRWL 1106

Query: 877  SIEKIF 882
             +++I 
Sbjct: 1107 EMQEIG 1112



 Score = 38.7 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 51/180 (28%), Gaps = 35/180 (19%)

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                   +    T+RGT++H ++  L           ++  + +   +    + +   + 
Sbjct: 1146 RPKFMGNQRLTPTERGTVYHTLMLHL------PLDGVMSAEIIEETKARLLNQRILLDVH 1199

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------------------ 895
                    KI   F            +I   +P    + +                    
Sbjct: 1200 AEALDT-DKILRFFSSELGSRMLRSSRIQRELPFTYTMRATDYWNHSLPVMLPEQKTVTE 1258

Query: 896  ------IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID---PQLSLEAAALKA 946
                  + + G  D +     G + + DYKT    +  T   L D    QL L A  ++ 
Sbjct: 1259 GGQDDKVLMNGIIDCLFETPEG-LVLLDYKTDRVSEYRTLSHLTDQYRFQLELYARVIEE 1317


>gi|148727119|ref|YP_001285613.1| gp37 [Propionibacterium phage PA6]
 gi|91982943|gb|ABE68606.1| gp37 [Propionibacterium phage PA6]
          Length = 315

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 60/262 (22%), Gaps = 53/262 (20%)

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
             +P     P   S+S + Q                     +      T  G+  H+I  
Sbjct: 4   AQYPKTINHPGHISYSSLTQWAECGEKWRLAHGYHAQHHTWY-----ATIAGSAIHHITE 58

Query: 818 E----LIKKRINKNTPEINHLMKQIIDSHFE--------------------KENLPPHID 853
           +    L         P+       I D+                       +   P   D
Sbjct: 59  QYDLHLYNPAEYPALPDKLSSFTNIFDTQIALAESEGTNIKPSGRICKNMCESGGPHKKD 118

Query: 854 IIWRHLF-HKISHSFLEHEEKIQSSIEKI-----FVNIPAKMAIESIGIHLTGFADRIDL 907
             W  ++       +             +      +  P +  ++     + G+ DR+  
Sbjct: 119 YNWWMMYGPTFVDRWKTWRRNHPEYATAVIDGQPGIEYPVETTLDDDT-KIVGYIDRVFT 177

Query: 908 LKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
               G   I D KTG  P           QL      L            V    +    
Sbjct: 178 DTDTGETFILDLKTGRLPAD-------SMQLHTYRYMLAQHGI------HVTKGMFW--- 221

Query: 967 QKFKIDCITNDKKKYSADELSE 988
                       ++ +A EL +
Sbjct: 222 TPATTKGDEQSVEQGTATELID 243


>gi|74316051|ref|YP_313791.1| DNA helicase/exodeoxyribonuclease V subunit A [Thiobacillus
            denitrificans ATCC 25259]
 gi|74055546|gb|AAZ95986.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
            25259]
          Length = 1089

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 77/796 (9%), Positives = 174/796 (21%), Gaps = 66/796 (8%)

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRL--LELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
              +    A +          S  +R   L +   I          +        L+   +
Sbjct: 235  WADPALRARVGRLGEALEKGSETERKKALAIREAIDAADVVQLRGLILKKDGERLAKKAN 294

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK-IASKYWTERLV 200
             +    L       +    + E   E L   + +            L       + +   
Sbjct: 295  ASTLAALGAEADTFLRDYASVEDALEALARHQTDLRIRELNRHGLLLGHALFTAYQDAKR 354

Query: 201  ELNASSPVGYQIALMRAEAEHLMKG--------TKGPIIIAGSTGSIPATARLMSTVANH 252
                      +    +                     +++     + P   + +ST    
Sbjct: 355  RQGVIDFADAEWLGCQLLMSEEYAPALAMKLDARYRHLLLDEFQDTNPLQWQALSTWLLE 414

Query: 253  PNG----AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
              G      V    D       +     +  +  +      +H + +         +   
Sbjct: 415  ARGGGSEMTVFMVGDPKQAIYRFRRGEARVFDAATDF--LHSHFEAARFSTDMTRRLAPP 472

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
             V  L  V   + G +              +R   +   K   +        L  A  E 
Sbjct: 473  VVAALNPVFAGVTGFAEHRHAPQNAERPGALRVLPLQVEKTEPVTAGGLRNPLTTARTEA 532

Query: 369  E------EAISIAIALRMS-------------LDENKKKSALITADRNLARRVKLELTRF 409
            E      EA   A  LR                    +    +   R      + EL   
Sbjct: 533  EDRVVDEEARVFARTLRDEILGRWGVIDKGTSRAAAPRDVIALVKKRTHLHVYERELEAA 592

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
             I    S    L   L +  L +L+  +   +  + +A ++K P+      +       +
Sbjct: 593  RIPYITSRRGGLLNALEARDLVALIECLLLPHADLKLAHVLKSPIFDCSDDD-----LLS 647

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD---H 526
                    G +    ++ L           +    +P W+ R         +  +     
Sbjct: 648  VFAPQPDAGARGWERLLALAEAPHATAEAARAARLLPRWRERCGTLPVHDLLDHIYCEGD 707

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
            +       V             +                    R+L +L  + +      
Sbjct: 708  VEARYAAAVPPARRPQVEANLRAFMQLALTQDAGRYPTLAGFVRELASLIDDADASPDEG 767

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            L +   +    +  +  + ++     + G + +P  E    L          L+F     
Sbjct: 768  LAADGADAVRLLTIHGAKGLEAPIVWLLGGSDRPHGESYGVLAPWPPDAPAPLHFSLFGK 827

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
                      +  +   L+     +L               +         +        
Sbjct: 828  QDERGAGRQGSFDEEKTLAEREADNL--------------LYVALTRAEQALIV------ 867

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
            +     + W+QR+                        +L    + P   R    P   A 
Sbjct: 868  SGDAGKNAWVQRVEAAWHALDLPADLPVAAEAGTHNIELRTPIEAPPIGRRVASPGHNAA 927

Query: 767  PRTYSFSEIKQLINDPYAVY--ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
              +  F      ++ P         +     +       +   R  L    +  L     
Sbjct: 928  AASGEFFHACLEVHAPPGAPRKLAELAMHLGLEREHARIEAEARALLARPELAHLFDPAR 987

Query: 825  NKNTPEINHLMKQIID 840
             +       L+ +   
Sbjct: 988  YRRAYNELALLDRDGR 1003


>gi|257052787|ref|YP_003130620.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
 gi|256691550|gb|ACV11887.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
          Length = 948

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 89/922 (9%), Positives = 208/922 (22%), Gaps = 130/922 (14%)

Query: 57  IQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELA-RL 115
               R+   +          + + L D          L +  + P V    R  E A   
Sbjct: 127 ADRFRTFLSQFVDAHPEHEAVFRVLNDPTSVLELIRELAAKGVFPTVDGWYRDGEAALDG 186

Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK-- 173
                 +L          +  +      +++   +     +     E +  +   ++   
Sbjct: 187 DFEAFEELFAEANAPNEGANGATQSDLRDSLSGFERDRCFLPDAPGEGELRDGYPSIDAK 246

Query: 174 --NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ---IALMRAEAEHLMKGTKG 228
              E +        DF+      + +  +  N  +    Q     L+  +          
Sbjct: 247 WAEEAFVEDREALKDFVHDVYVEYIQFALRRNYLNFSFLQLFAFVLLCEDHALRESIAFE 306

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            +++     +     +L   +A   N  +V    D       +     ++          
Sbjct: 307 QVMVDEFQDTSEIQFKLALLLAGTDNLCVV---GDWKQSIYGFQYAAVENIRSFE----- 358

Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                  L      L+ + E V         +  R    S   +   +            
Sbjct: 359 -----RRLRTYKRELNGEYERVGFPVEEVTTIPLRRNYRSTQLILDLSRHALTVPATG-- 411

Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
             +I++   D+  +EAD+ R  +   A       +    +   I  + +           
Sbjct: 412 SESIERTVDDIDGLEADSARGHSTIAAFTSASEREAILDRIETIVGNDDY-----AVDDE 466

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
            G     S       T                ++F                    L    
Sbjct: 467 NGDLRTPSYDDIAVLTRTRRFGR---ELQTTADEFGVPVAYEGGVKLFETDQAILLLAWL 523

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
             L     R            +L       Q  +           +E       +   + 
Sbjct: 524 RILADEDSRRGWAVVLERAGYTLAEV---EQILDERAYPDAMVSFQEGLAAMESIGAIVR 580

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
           Q                 + S S    L          +    +  +    + +    + 
Sbjct: 581 QIFE---------RYGFADASASSLVALLQDVSDGTTRNLGGMIRFIERSLDAEATHEID 631

Query: 589 SK-IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
                ++ +    +A + ++    ++                 +   +   L        
Sbjct: 632 DNPGGDSITVQTIHAAKGLEHPIVIVANINRYSFPPSGGGDDRIRFEDPIGLR-----QT 686

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
            L+     +    + +  RV+ + L       Y  +    +      +  +   +     
Sbjct: 687 KLSSTAHGRPHLYDNWRYRVLSACLG----RDYDEERRLLYVAMTRAQDHLLFSA----- 737

Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                S   + L  L        LK+ G    + TR             P+P  P    P
Sbjct: 738 -GVEPSPLFENLP-LEPESVEPELKESGIDRTEQTRL--------QVSIPEPDVPAGQSP 787

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
                                  L  D +   +++    + G   H            + 
Sbjct: 788 ---------------------HALMDDRVFEDREEGRGIEFGNRVHEFAERYAAGEAVEP 826

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
             +    ++  ID       +                                       
Sbjct: 827 ASDDERRVRDFIDGLDGTLLVEEDAY---------------------------------L 853

Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            +A+    + ++G  D + + +   V+I DYKT          +    QLS+    ++  
Sbjct: 854 PVAVGEQQVTISGVIDLLHVTED-RVEIVDYKTDLTRDAVDEYR---KQLSVYYHVVRH- 908

Query: 948 SFSQIDCRKVANLFYIRLKQKF 969
                  R+V+   +   +   
Sbjct: 909 ---MYPDREVSPAIFYTAEGDR 927


>gi|312139062|ref|YP_004006398.1| exodeoxyribonuclease v gamma subunit recc [Rhodococcus equi 103S]
 gi|311888401|emb|CBH47713.1| exodeoxyribonuclease V gamma subunit RecC [Rhodococcus equi 103S]
          Length = 1085

 Score = 63.0 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 94/893 (10%), Positives = 224/893 (25%), Gaps = 59/893 (6%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
            R      L   L +       +P       I VP K   + L      + G   +    
Sbjct: 5   HRAESAGTLASALAQVLVTPLADP--FEREVIAVPAKGVERWLTQRLSHVLGAGDSGHDG 62

Query: 78  IKSLGDVVEEKFTADLLLSYNL-----NPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
           + +  D        D  L+        + P    + L  L ++I     +    +   + 
Sbjct: 63  VAANIDFPSPNRLIDQALAAATGYDVDDDPWHPSRMLWTLLQVIDDCLAEPWCTVLARHL 122

Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
                           A +LA++     ++      L      +    +      L   +
Sbjct: 123 GHGADDHR-AGRRYGTAAHLAELFRAYGSQR--PAMLVDWAAGRDTDGFAPLDADLCWQA 179

Query: 193 KYWTERLVELNASSPVGYQIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
           + W      + + SP     A   R   E  +      + + G T        ++S +  
Sbjct: 180 QLWRRLRERIGSPSPAERLDAACARLRDEPALLELPERLSLFGPTRLGADQIAVLSALGA 239

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
           + +  + +P     +   + ++   +           +     SLA+ +  L  +   + 
Sbjct: 240 NRDVHVWIPHPSIEMWGELADSEPPRRRADDVRALDVAHPLLASLARDVRELQSRLGAIG 299

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
            +                   P        +DI  ++ P+       V +        + 
Sbjct: 300 MVDVHHPGP----------SRPATLLGQLQSDIAADRQPSSWPVDDTVEIHSCHGPARQV 349

Query: 372 ISIAIALRMSLDENK----KKSALITADRNLARRVKLEL----------TRFGINIDISA 417
            ++   L      +     +   ++  D      +                        A
Sbjct: 350 EALRERLLHLFQNDPTLEPRDVVVMCPDVETYAPLVRAAFGQGVQGPLTHPGHRLRVRLA 409

Query: 418 GIPLSTTLHSS-ILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALE 472
              L  T     ++ +LL+          +  L          +F        R      
Sbjct: 410 DRALHQTNPVLGVVATLLDLADSRVTVSQVLDLAATAPVRRRFRFDDDNLERMREWTVAA 469

Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
                  +       L     + +    +   +         E   LA+ L D     I 
Sbjct: 470 GARWGIGRRERGAFGLGDFEQNTLKAALDRILLGAAADDADGEWLSLALPLDDVESNDID 529

Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE-EGKTLSSLFSKI 591
                    +    +L      +        +       +     +  +        +  
Sbjct: 530 LTGRLAEYVDRLDVSLRGLTGPQSAEQWSAALARALDLLVDVTEADAWQLGQARRELAAA 589

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
           +E G        +   ++   + G   +        L +   +  R +    ++L GL++
Sbjct: 590 VEHGGDTLLRLADVRAMLRSRLAGRPTRANFRTGE-LTVCTMVPMRSVPHRVVVLLGLDD 648

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY-TRSLRENNIPT 710
            V+P+ T  +          L  +       Q   D  M+   R L++ T +   N    
Sbjct: 649 DVFPRGTGIDGDDVLARDPLLGERDPRSEDRQLLLDAIMSASERLLLFYTGADPVNGTAR 708

Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
             +  L  L  +       ++ +R            +  +    +   P  P        
Sbjct: 709 PPAVPLAELRDVLAAMAGADVVQR------------HPLQPFDPRNFDPVGPRSFDHAAL 756

Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
             +   Q  + P   +    L          D D  +      N I   +++R+    P+
Sbjct: 757 GGARAAQQPSVPAPAFLPEPLPPI----EPGDVDLAELIAFLENPIQGFLRQRLGFRVPD 812

Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
           ++  +   +D   +        + +          +     E  + ++    +
Sbjct: 813 LDEDVADTLDLELDPLARWGIGERMLGARLAGADPAAFRAAEWRRGTLPPARL 865


>gi|325066922|ref|ZP_08125595.1| DNA/RNA helicase [Actinomyces oris K20]
          Length = 440

 Score = 63.0 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/404 (12%), Positives = 106/404 (26%), Gaps = 50/404 (12%)

Query: 366 NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
           +  EEA ++A  L         + A++   R     V  EL   G+   I     +    
Sbjct: 10  DPAEEARTVAAFLAERWSP-GAEMAVLCRTRAQMEPVAAELEAAGLPYTIIGLGGMLYVP 68

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
             + + +LL           +  L+           + L+     L   A    K     
Sbjct: 69  EVADVRALLTTASDPERGDRVVRLLTG-FGIGARDLRVLAALARELTRTATESGKEGPGA 127

Query: 486 MDLKSLVL-DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              ++      ++   +     H      E+++  A   +    + +         +   
Sbjct: 128 HGDRAEADSPLLSEALDALLRWHEDGVQEEQEESAAARDLTEAGRAVALRTARAIRRIRE 187

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
             +L + D   L    L        R    +          +  +   +T +      +E
Sbjct: 188 AVSLPLPDLVALAEQVLDLDIEIAARVGHPMGHRALDSFHETARAFAADTDAPTLTGFLE 247

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP--------- 655
           W+D      D  +          + +L    ++ L +D + + G++E V+P         
Sbjct: 248 WLDAAEEHEDAMSAPEVEPSPGAVQLLTVHAAKGLEWDVVAVPGMDEQVFPSYTSAVKDD 307

Query: 656 -----------------------------------KNTAKNPFLSRVMQSDLNLKTAEKY 680
                                                    P L+  M +       +  
Sbjct: 308 LRVAETGWMGSTSTFPFPLRADAGDLPPFTVGDLDPAVTDKPLLTETMSAYKEALGRQSL 367

Query: 681 IGQAAHDFEMANGTRHLIY---TRSLRENNIPTIASRWLQRLLV 721
             +    +      RH +    +   +  + P   SR+L  L  
Sbjct: 368 REERRLAYVAFTRARHELLLTGSHLSKTASKPRRPSRFLTELQR 411


>gi|227891362|ref|ZP_04009167.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus salivarius
            ATCC 11741]
 gi|227866940|gb|EEJ74361.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus salivarius
            ATCC 11741]
          Length = 1253

 Score = 63.0 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 23/185 (12%)

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
             +         Y +  LKL      K        GT  H ++ +L       +       
Sbjct: 1055 WQDQAPQGINRYVQGELKLPKFMTTKVKVSPAQVGTATHLLLQKLPL-----DDEVTLEE 1109

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI--QSSIEKIFVNIPAKMAIE 892
            + Q++    E + + P +    + +      +F   +       + +K+   +P  M I 
Sbjct: 1110 LMQLLSQLVEDKLITPEV---AKEINLDQIKNFYASDLGRKVLENKDKVKRELPFAMIIP 1166

Query: 893  SI------------GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
            +              I + G  D +  L    V I DYKT  +  ++   +    QL+L 
Sbjct: 1167 AGRLFSNVDNDVEQPILVHGIIDGLIELDD-EVIIFDYKTDHHTSEDKLIENYRGQLNLY 1225

Query: 941  AAALK 945
            A A++
Sbjct: 1226 AMAVE 1230


>gi|228477150|ref|ZP_04061788.1| ATP-dependent nuclease subunit A [Streptococcus salivarius SK126]
 gi|228251169|gb|EEK10340.1| ATP-dependent nuclease subunit A [Streptococcus salivarius SK126]
          Length = 1217

 Score = 63.0 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/594 (9%), Positives = 146/594 (24%), Gaps = 31/594 (5%)

Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGP 229
           +       L   F+   S  + +   + NA          +R   E+       +     
Sbjct: 355 DDILPLLELLQAFVLDFSDQYLQAKTQENAFEFSDIAHFAIRILEENPEVAASYRDRYHE 414

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
           +++     +     R++  ++   NG       D       +     +  N         
Sbjct: 415 VMVDEYQDNSHTQERMLELLS---NGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFL-- 469

Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
            +P      LL      + +V    N          +    +         +    E   
Sbjct: 470 ENPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSEKQKEPHP 529

Query: 350 PNIQKCFSDVALIEADNEREEAI-------SIAIALRMSLDENKK-----KSALITADRN 397
            N  +     +   +    EE          I++ ++  +  +++        L+   RN
Sbjct: 530 ENETEVLIYNSDEASVTPDEEGADQPISSGEISLVIKEIIKLHEQGVRFEDITLLAPTRN 589

Query: 398 LARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
               +       GI +           +L   I+   L AI    +  A+  L++ P+  
Sbjct: 590 TYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALVALLRSPMFN 649

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
           F   +     A  A +         ++    L   V+ +    K    +           
Sbjct: 650 FNEDDL-ARIAVQADKGQFYDKLLAAHTKSGLHPEVVTQGLDAKLTLFIETLADWRDYSK 708

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                 L+  I           +   +     ++           +       R +  + 
Sbjct: 709 WHSLYDLIWKIYDDRFYYDYVGSLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMID 768

Query: 577 FEEEGKTLSSLFSKIIE--TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                       + ++     S +  +  + ++     +     K        L     +
Sbjct: 769 KIISSGNDLEEVTDLVPKNAVSLMTIHKSKGLEFKYVFVLQMNRKFIGHSRDGLS-GKYI 827

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            +R        L  L + +       N  L  +   +   +     I +      +A   
Sbjct: 828 INREKGLGIKYLADLKDQINTNLPKLNVVLETLTFQENRREERRASISEEMRLLYVAMTR 887

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                   + + +   +  ++   +            + +   Y DW   LD  
Sbjct: 888 AEKKL-YLVGKGSKEKLTQQFGTDVENNRLPVAL---RDQIATYQDWVMALDTA 937



 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 45/149 (30%), Gaps = 17/149 (11%)

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                  G+  H ++  LI             L +   D   +            R    K
Sbjct: 1057 VTGAAVGSATHELMQRLILSDKVTLQDLTQALSRVSADDQVKA-----------RVQLEK 1105

Query: 863  ISHSFLEHEEKI-QSSIEKIFVNIPAKMAIESI----GIHLTGFADRIDLLKSGFVDITD 917
            +   F     K+  ++  K+    P  M  E         + G  D   LL+   + + D
Sbjct: 1106 LLGFFDTELGKLILANRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLED-RIVLFD 1164

Query: 918  YKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            YKT         ++    Q+SL A AL  
Sbjct: 1165 YKTDRFTHPSELKERYKGQMSLYAKALSQ 1193


>gi|170696350|ref|ZP_02887480.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
 gi|170138756|gb|EDT06954.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
          Length = 738

 Score = 63.0 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 68/695 (9%), Positives = 177/695 (25%), Gaps = 98/695 (14%)

Query: 12  APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE----I 67
            P +        +    TL        +       + +   ++RA  E+           
Sbjct: 55  PPGALLVIAGAGSGKTNTLAHRVANLMVKGADPGRILLLTFSRRAALEMTRRVTRIATAA 114

Query: 68  TGKKSTILPIIK---SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
            G ++ +   +    +   V       +      L P  +   R    A L+ + R++L 
Sbjct: 115 LGTRAALAQGLTWAGTFHSVGARLLR-EYAELIGLAPAFTINDREDS-ADLMNLVRHELG 172

Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE-DLHALKNEKYGMWWLL 183
              K+    +  +     +  +    +L  ++D      ++WE DL  L           
Sbjct: 173 LSAKERRFPAKSTCFAIYSRVVNTGASLGQVLDSAFPWCREWEADLRMLFAAYVDAKQKQ 232

Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243
           +         YW+    E                     +      +++     +    A
Sbjct: 233 SVLDYDDLLLYWSHMAAEP---------------AIAADLSVRFDHVLVDEYQDTNRLQA 277

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            ++  +   P+G  +    D       +   T ++     +        Q+        L
Sbjct: 278 SILLALK--PDGRGLTVVGDDAQSIYSFRGATVRNILDFPA--------QFDPPATQITL 327

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
           +      + +   SN +   +       L  D +  +                    L+ 
Sbjct: 328 ERNYRSTQPILAASNAVIELASERYTKNLWTDKASAQRP-----------------RLVT 370

Query: 364 ADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
             +E ++A  +   +  + ++    K  A++    + +  +++ELTR  I      G+  
Sbjct: 371 VADEADQARYVVEQVLEAREQGMKLKSQAVLFRAAHHSAALEIELTRRNIPFVKFGGLKF 430

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
             ++H   + ++L       D +A   +V+                   +    +     
Sbjct: 431 LDSVHVKDVLAVLRWAENPRDRVAGFRVVQ-------LLPGVGPATAAKVLDEIVARAGA 483

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              + +    V + +A    N          ++ED    V L+  +    TP        
Sbjct: 484 GVAVGNPAGTVAESLANSAANALAAFAPPPRAQEDWHPFVRLMSSVYGRQTPWPAEFEMV 543

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                     +     +     + ++              +          +       +
Sbjct: 544 RRWYEPHLARNHEDAAIRHADVLQMESIAGTYASRERFLTELTLDPPDATSDESGVPLID 603

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                                     L +     ++   +  + +    +G  P      
Sbjct: 604 -----------------------EDHLILSTIHSAKGQEWRNVFVLNGVDGCIP------ 634

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
                   SDL   + ++   +    +      + 
Sbjct: 635 --------SDLGTGSEDEIDEERRLLYVAMTRAKE 661


>gi|20384889|gb|AAL79572.1| exonuclease V beta subunit RecB [Pseudomonas syringae]
          Length = 1227

 Score = 63.0 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 89/933 (9%), Positives = 225/933 (24%), Gaps = 100/933 (10%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A          +D +   +   + L   
Sbjct: 273  FEKLSAWAADESLEQLDLGTGFTRLTPDGFAEAWKGEPPQHPALDAMHGLKAALDALPTP 332

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++  +W+ +  F +        R  E+     +    A ++A+       L++  
Sbjct: 333  DAAVLEHAAYWV-SKRFEEE-----KRRRAEMGFDDMLLRLDAALQADGGERLATLIREQ 386

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  T+    + +    +    D       +      +     
Sbjct: 387  FPVALIDEFQDTDPVQYRIFETIYRIEDNSPDTGLFLIGDPKQAIYAFRGADIYTYLRAR 446

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T+   H   +  +    +      V       +          ++ +P  +   +   
Sbjct: 447  HATSGRLHTLDTNFRSSHVMVEAVNHVFARAEQRDRGAFLFREGPENPVPFVSVKSQGRK 506

Query: 344  ILENKIPNIQKCFSDVALIEADN------EREEAISIAIALRMSLDENKK---------- 387
             +           +   L            ++ A + A  +   L+  ++          
Sbjct: 507  EVLQLDGQPATALTLWQLPSEQPLSGVIYRQQLAAACASQIVELLNGGQQGRCGFAQAGK 566

Query: 388  --------KSALITADRNLARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                      A++  D   A+ V+ EL+ R   ++ +S    +     +  + + L A  
Sbjct: 567  ALRGVLPADIAILVRDGKEAQAVRRELSTRGVRSVYLSDKDSVYAAQEAHDVLAWLKACA 626

Query: 439  KL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            +        A    +   L                  ++  RG +  +    + +++   
Sbjct: 627  EPDVERPLRAALACITLDLPLIELERLNQDELAWESRVMQFRGYREIWRKQGVLAMLRRL 686

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            +   +    +      ++  D E  +  V H+ + +    T    + +   +L+      
Sbjct: 687  LHDFQLPQAL------IARVDGERILTNVLHLSELLQQAATELDGEQALIRHLAEHLALS 740

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI-- 613
                  Q + L+   +L  +    + K L      +    S    +              
Sbjct: 741  GQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFICSTKPVDGSRLPLHYHDDAGN 800

Query: 614  ------DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                      +  + +       L  L   L         G+ +     N      LS +
Sbjct: 801  PRVSLKATPELITQADDERLAEDLRLLYVALTRAQHACWLGVADLKRGNNNRSVLHLSAL 860

Query: 668  MQSDLNLKTAEKYIGQAAHD-FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
                       +  G          +                                  
Sbjct: 861  GYLLGGGALLAESAGLQGWLTDLQQDCAAIRYLPVPTASEAKFYPPLN-----QATLLKP 915

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP-----------PLEAQPRTYSFSEI 775
                 +     ++     L         + P+              P   +    S  +I
Sbjct: 916  LLPARRAAENWWIASYSALRIGDSLSPAEAPESALAQKLSDDERLDPDAPREVLLSGGDI 975

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
             +    P        L    +     +  + D   +   +     ++        ++  +
Sbjct: 976  HRFPRGPNPGTFLHGL----LEWAGGEGFKADPQAIQDAVARRCNRRGWQGWIETLSDWL 1031

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES-- 893
            + + D      N  P + +     +      +    +     ++++        A  +  
Sbjct: 1032 QHLQDEPLRLNNGQPAVVLSELSQYQIEMEFWFASHKVDVLQLDRLVRQHTHGGAARAAA 1091

Query: 894  ----IGIHLTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLS 938
                +     GF D     + G   + DYK+                        D Q  
Sbjct: 1092 EPSLLNGMFKGFIDLTFEHQ-GRYYVADYKSNWLGADDSAYTEQAMTASILDNRYDLQYV 1150

Query: 939  LEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
            L   AL     +++      R +    Y+ L+ 
Sbjct: 1151 LYLLALHRQLKARLADYNYDRHMGGALYLFLRG 1183


>gi|325661458|ref|ZP_08150084.1| hypothetical protein HMPREF0490_00818 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472407|gb|EGC75619.1| hypothetical protein HMPREF0490_00818 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 403

 Score = 63.0 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 19/187 (10%)

Query: 770 YSFSEIKQLINDPYAVYARRILKLDF-IPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
           +S+S+       PY  Y + +  +                G + H I+ +L    I K  
Sbjct: 25  WSWSKFNTYHTSPYEYYLKYLKHVPEDRDDCIYVVT----GGMAHEIMEDLYLGHI-KYE 79

Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI---SHSFLEHEEKIQSSIEKIFVNI 885
                     I +         + +   + +  K       F  H +      + + +  
Sbjct: 80  EMDEKFEDAWITAEVADLKFDRNDEKKNKSVKQKYYDCLKHFFNHHKM---FEQHMEIER 136

Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAA 943
                I        G+ D I   K G   I D+KT      KK   +     QL + A A
Sbjct: 137 FVTAKIGDNVFQ--GYIDAIYRDKDGNFHILDWKTSSIYKGKKAENECG---QLIVYAIA 191

Query: 944 LKAGSFS 950
           L      
Sbjct: 192 LNQIGIP 198


>gi|83815933|ref|YP_446416.1| DNA helicase II [Salinibacter ruber DSM 13855]
 gi|83757327|gb|ABC45440.1| DNA helicase II [Salinibacter ruber DSM 13855]
          Length = 1084

 Score = 63.0 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 74/710 (10%), Positives = 170/710 (23%), Gaps = 85/710 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + + +   T+RA Q+L S    + G ++       ++     +   A    +   +  + 
Sbjct: 56  SRLVLVTFTRRAAQQLTSRLAALVGPEAQ-HVRAGTIHHFCYKTLRAHSAPAGVPDDFI- 113

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                             + D + D + +           A  L              + 
Sbjct: 114 -----------------VVDDTVTDAFWQRWYEAHERWCEANDL--------HSYRQVKT 148

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
               +  L  +            L    + + E L +  A       +        H   
Sbjct: 149 HVSRIK-LGIDTVSGR-------LTEGLRAYGEMLGDRGALDFDDLLVKTRDLLRSHPDV 200

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                     +++     + P    ++  +     GA +    D       +      + 
Sbjct: 201 RADLVDETRAVLVDEFQDTDPVQFDIIRRLGEA--GAHLYCVADDDQSVYRFRGARPAN- 257

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                           L + +D  D   E   R    +N    RS+            D 
Sbjct: 258 ----------------LRRYIDRFDCSAERGTRHVLTTNYRSNRSIYAVA----EAVLDA 297

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397
                    I         V L+  D+   E   +   LR  LD+   +   A++T    
Sbjct: 298 DERLKQRGDIRTSNAGTQPVQLVACDDPEAERTHVLRQLRDWLDDGAERSDLAVLTRWNR 357

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
               ++    R G+  + S    L  T  +  L +LL  +        +   +   L   
Sbjct: 358 RLAALERACLRAGLACETSQSEALLDTPPAQKLHALLRVVDARRRGRPLDAPMTE-LLSH 416

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
             P+  ++R ++  E         +     + +    R A   + T              
Sbjct: 417 LLPDDTMARLRDFGERSMPDATLWTAFQTVVSNEQARRSAGLDSATDRLDQTYATITNLL 476

Query: 518 EL-----------AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC--LQNV 564
           +                +  +   +  L  Y           S+     +       Q  
Sbjct: 477 QNTQEDGLTIGAFTRTALRQLGDPLQLLRRYADTLTDPASRPSVRQAGTVLDEWRRAQAR 536

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                     L      +        +               ++   L      +     
Sbjct: 537 DARAGDPPRLLLHHRTPQITRLWRQLVRRALDLETDPPAPLPEMQEALFARPADEGIPPL 596

Query: 625 SSTLFILGTLESRLLNF--DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
            +   +L      LL +   T    G  +       A +  L    ++ L +     ++ 
Sbjct: 597 GADDVVLTNDLEALLRWAERTGAFSGSTDTPQILLLAPDGALPSGQKTLLGVDPENVHVV 656

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                F     +  +   + L+  + P+         +++       + +
Sbjct: 657 DPESTFH----SPSVRLVKLLQMTSGPSAPEPLFPEYVMVDLEATSTDPR 702


>gi|50083734|ref|YP_045244.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter sp. ADP1]
 gi|49529710|emb|CAG67422.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter sp. ADP1]
          Length = 672

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/720 (8%), Positives = 175/720 (24%), Gaps = 128/720 (17%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T++    +          + I   T+RA  E+ +   +  G  +  L    +       
Sbjct: 53  KTIIARAAHLIHRGTPADQIQILTFTRRAASEIVTRVEQHLGAPAKGL-RASTFHTFCMY 111

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +          + +    + + RL+     K  + +     +       +      
Sbjct: 112 LLRRNPQAFGLGQFTIIDRDDQMLMFRLLRG---KDKNNVLPKAAQLCDVYSYARNTQSK 168

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
           L+  L   +      + +  +L          +     +            L   +  + 
Sbjct: 169 LSDALIKQLPEALEHKVQIAEL-------MQSYEQRKQE---------RHFLDYDDILAI 212

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
           V   +       + + +     +++     + P    ++  +  H     +    D    
Sbjct: 213 VAVNLQNSPELVQWVTRFC-KVMLVDEMQDTNPLQWGILQPLIEHVG---LFCVGDDAQS 268

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +     ++ +        +                     + L    N    + ++ 
Sbjct: 269 IYGFRGADFENIHHFKERIPNA---------------------EVLTLEENYRSTQEILD 307

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--N 385
             ++L   +    +  +  ++   ++   +        NE EEA  IA  L     +  +
Sbjct: 308 ISNWLLAHSPIEYHKQLKAHRGQGLKPQLN-----IFQNEFEEANWIAQDLLARHQQGAH 362

Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
             +  ++      AR ++  L    I      G+ L  + H   + S+L  +    D +A
Sbjct: 363 WHEHMILVRSGFSARYLEGALISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIA 422

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
               +       G  +   S+  + L  +     +                         
Sbjct: 423 WMRFLT---LWNGVGDVGASKLAHELIQLPDIDARC------------------------ 455

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                R  + D +  ++L           +            L++    +      +   
Sbjct: 456 -ERLERHDKVDPKAILILKQ---------LDVLQQHVEASIGLALDALAEQLEQNYKTQD 505

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                K  +L  +     L      + E         +   +I            +    
Sbjct: 506 WSRRVKDFDLVKQ-----LGRKHVALSEFLEEYVLEPVSISEI-----------ERSGDQ 549

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
             + I+    ++        +  ++   +P   A+  F              ++   +  
Sbjct: 550 DLVTIITIHSAKGAEQKVCYVPHVSPNAYPHARAQGDF--------------DEVEEERR 595

Query: 686 HDFEMANGTRHLIY-------TRSLRENNIPTI--ASRWLQRLLVLGGTDFFDNLKKRGQ 736
             +       + +        T +  + +       S +L  L              R  
Sbjct: 596 VLYVALTRAENELIITKQNYNTWAQDQYDEQGRKIESYFLNDLPQHLVDAHIHQTVPRFP 655


>gi|291454017|ref|ZP_06593407.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
 gi|291356966|gb|EFE83868.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 743

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 64/679 (9%), Positives = 149/679 (21%), Gaps = 72/679 (10%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L   +    R +   P    SV     T RA  E+R    ++           ++     
Sbjct: 69  LTHRIAYGVRTNRFQP---TSVLAVTFTNRAAGEMRGRLRQLGAGGV----QARTFHSAA 121

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
             +              V        L RL+      + +           +        
Sbjct: 122 LRQLQYFW------PKAVGG-----TLPRLVERKAQLVAEAGAACGIRLDRNQLRDATGE 170

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
           I  AK    +                    K           L      + +   +    
Sbjct: 171 IEWAKVTQTVPGDYAE-----------SVAKSQRHAPRDPAELAQIYARYEQLKRDRGVI 219

Query: 206 SPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                 +  +    +        +      ++       P   RL+       +   V+ 
Sbjct: 220 DFEDVLLLTIGILQDRRDIADHVRAQYQHFVVDEYQDVSPLQQRLLELWLGDRDSLCVV- 278

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D       +   T +             HP+ ++ KL+       + V     + ++ 
Sbjct: 279 -GDASQTIYSFTGATPEHLLNFRVR-----HPEATVVKLVRDYRSTPQIVHLANGLLSQA 332

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
            GR+                       ++ + +    +   IE  +E  EA   A  +R 
Sbjct: 333 RGRAA------------------DHRLELVSQRDTGPEPQHIEYGDEPSEAEGTARRIRD 374

Query: 381 --SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             +      + A++      +   +  LT  G+   +                + L    
Sbjct: 375 LIAAGVPAGEIAVLFRTNGQSGLYEQALTDAGVPYQLRGAERFFERREVREAQAALRGAA 434

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
           +     A    + H LA         S       + +         +  L  L  D  A 
Sbjct: 435 RFGGNDAALD-LAHDLASQVRAVLSASGWSAQAPVGSGASRDRWESLAALARLAEDFGAA 493

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
           Q + +              + A  +                + ++  G    + +     
Sbjct: 494 QPDASLADFVTELDERAASQHAPTVQ----------GVTLASLHAAKGLEWDAVFLVGLT 543

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
             +  +      +            ++    ++  + S  +A       + +R +     
Sbjct: 544 EGMMPITYARTDEQLEEERRLLYVGITRARFRLTLSWSLSRAPGGRAHRVPSRFLKDLRG 603

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                 +S+  + GT  +                      +        +       +  
Sbjct: 604 ASATRGASSFSVAGTGGTSAGTGAPRRGPRKPIRCRTCGRSLTDAGEMKLMRCEGCPSDM 663

Query: 679 KYIGQAAHDFEMANGTRHL 697
                       A     L
Sbjct: 664 DEGVYERLHTWRAAEAERL 682


>gi|283850979|ref|ZP_06368264.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
 gi|283573625|gb|EFC21600.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
          Length = 1080

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 72/648 (11%), Positives = 147/648 (22%), Gaps = 91/648 (14%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG-------KKSTILPIIKS 80
             TL+   R      +    +     T+RA  ELR                 +  LP   +
Sbjct: 501  HTLLAKIRSLLEAGVPADKILAVTFTRRAAGELRDRLARDIPALADGTRTGAAALPRADT 560

Query: 81   LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
            L  +    +T        L       +RL  LA                  P    +   
Sbjct: 561  LHALALAAWTEAGGREPVL-LSEEAARRLFALAN-----------------PGLAGARLK 602

Query: 141  SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
            +   A+ L++              + E L    +          A         W     
Sbjct: 603  AAWRALDLSRE-------------RLEPLEPAADTDGSDGPGRFAARYAAQKAAW----- 644

Query: 201  ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
              N           +        +     I++       P    L++ +A  P+ A +  
Sbjct: 645  --NLLDFTDLLEFWLEKLTSGDSRPDWSHILVDEVQDLTPLQLALVAALAG-PDRAALFA 701

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              D       +   T                             ++        +++   
Sbjct: 702  IGDPDQSIYGFRGATG---------------------------GVEARLAALWPDLAVAP 734

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
               +   ++  L            L +++  I      + L  A     EA  +A  ++ 
Sbjct: 735  LAENYRSAQPVLDLAAGLFPGRRPLVSRLGPILPAAGGMELFAAPTAGAEAEWMAGRIQE 794

Query: 381  SL--------------DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
             L                +    A++     L   ++  L R GI               
Sbjct: 795  LLGGTSLTLTRDFSVATLSPGDVAVLVRFSGLVPAIRKSLERRGIPCAAPEADAFFNEPR 854

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              +L +       L   +  A     P      P+  L+R    L  +            
Sbjct: 855  VRLLLAAAGRHLGLPAALGEAGDADGPTL-PALPDAILARGPRGLAALLQDSPPFDRLFW 913

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
                      A   +            E + EL   L + +   I  L   K  + +   
Sbjct: 914  QGPQFRDLCRAYDTHKGWAGLLNHVAGETEIELVGRLAEKVR--IMTLHAAKGLEFAAVF 971

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              ++ D                          +E +     +  +    + +  +  +  
Sbjct: 972  LPALEDGILPFAGAAALTGAPGGTAGDPAGRMDEDEERRLFYVGLTRAKTRLFLSHAKRR 1031

Query: 607  DIITRLID-GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
            D+  + +    +   +      +         +     L L G  E  
Sbjct: 1032 DLFGKRLALPRSRFLEELDLGGVRQRTLAARTVRQARQLPLLGGGEPT 1079



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 70/757 (9%), Positives = 164/757 (21%), Gaps = 72/757 (9%)

Query: 8    VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67
            +  + P +   R +  AL      E        P  LA V   +    A+  +R   +E 
Sbjct: 348  IMGVGPKTGKARRLTAALYARFGAELTILRETPPEDLAKVNTVL--AEAVSRMRQGRVER 405

Query: 68   TGK----------------KSTILPIIKSLGDV-VEEKFTADLLLSYNLNPPVSNIQRLL 110
            T                  +       + +           +     +  P      +  
Sbjct: 406  TPGFDGEYGRITVFSAEEKRDIKAGRFRPVPAGNSTGATPRESASDGDAPPEPPPAGQTP 465

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
              A             +        +           L   +  ++          + + 
Sbjct: 466  RSAPARPDLNAAQEAAVTAAGRHLLVVAGPGTGKTHTLLAKIRSLL----EAGVPADKI- 520

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
             L             D L        +      A+ P    +  + A A     G + P+
Sbjct: 521  -LAVTFTRRAAGELRDRLARDIPALADGTRTGAAALPRADTLHAL-ALAAWTEAGGREPV 578

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            ++        A               +        +       +   +    S       
Sbjct: 579  LL----SEEAARRLFALANPGLAGARLKAAWRALDLSRERLEPLEPAADTDGSDGPGRFA 634

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
                +     + LD        L  +++                D + ++   +     P
Sbjct: 635  ARYAAQKAAWNLLDFTDLLEFWLEKLTSGDSRPDWSHILVDEVQDLTPLQLALVAALAGP 694

Query: 351  N------IQKCFSDVALIEADNEREEAISIAIALRMS---LDENKKKSALITADRNLARR 401
            +      I      +          EA   A+   ++   L EN + +  +         
Sbjct: 695  DRAALFAIGDPDQSIYGFRGATGGVEARLAALWPDLAVAPLAENYRSAQPVLDLAAGLFP 754

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
             +  L      I  +AG        ++   +   A          +  +    +      
Sbjct: 755  GRRPLVSRLGPILPAAGGMELFAAPTAGAEAEWMAGRIQELLGGTSLTLTRDFSVATLSP 814

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
              ++                      L   +   +  +      P   +  +E    L +
Sbjct: 815  GDVAVLVR---------------FSGLVPAIRKSLERRGIPCAAPEADAFFNEPRVRLLL 859

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                  L     L         T   L            L  +  D        W   + 
Sbjct: 860  AAAGRHLGLPAALGEAGDADGPTLPALP-DAILARGPRGLAALLQDSPPFDRLFWQGPQF 918

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            + L   +                W  ++  +     ++     +  + I+    ++ L F
Sbjct: 919  RDLCRAYD-----------THKGWAGLLNHVAGETEIELVGRLAEKVRIMTLHAAKGLEF 967

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYT 700
              + L  L E                  +  +         +    +      +  L  +
Sbjct: 968  AAVFLPAL-EDGILPFAGAAALTGAPGGTAGDPAGRMDEDEERRLFYVGLTRAKTRLFLS 1026

Query: 701  RSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKK 733
             + R +     +    SR+L+ L + G        + 
Sbjct: 1027 HAKRRDLFGKRLALPRSRFLEELDLGGVRQRTLAART 1063


>gi|212704818|ref|ZP_03312946.1| hypothetical protein DESPIG_02882 [Desulfovibrio piger ATCC 29098]
 gi|212671780|gb|EEB32263.1| hypothetical protein DESPIG_02882 [Desulfovibrio piger ATCC 29098]
          Length = 259

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 74/241 (30%), Gaps = 19/241 (7%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S S +      P       I K+      +K P     G+  H+I+   +         
Sbjct: 6    LSKSRLNTYCQCPEKFRLTYIEKIL----VEKTPVALIEGSALHHIVENCL-VYGKAIPN 60

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI--SHSFLEHEEKIQSSIEKIFVNIPA 887
                  K+   S   +       + +       +  +  FLE    + +   + +   P 
Sbjct: 61   MAEEASKEFWSSVQLEATEYSSAEKLEAAERKILSEATRFLEMIGGLNTYQMETYFEHPL 120

Query: 888  ----KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
                   ++   + L G+AD ID        I D KT         Q     +L++ A  
Sbjct: 121  VHPATGEVD-HSVILRGYADIIDAPAQDITRIIDIKT-SAKSPHEEQANRALELTVYAYL 178

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
            +              +  Y+   ++ K+  + +++           + + +  IV  +++
Sbjct: 179  MA--CTFGFQISIPVSFLYLVRTKELKVVWLHSERSMPDFM----AAYQEISSIVKAIRH 232

Query: 1004 G 1004
            G
Sbjct: 233  G 233


>gi|73542063|ref|YP_296583.1| hypothetical protein Reut_A2377 [Ralstonia eutropha JMP134]
 gi|72119476|gb|AAZ61739.1| hypothetical protein Reut_A2377 [Ralstonia eutropha JMP134]
          Length = 310

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 15/196 (7%)

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
            S + +L + P    A+ IL +            +  GT  H       +  ++      
Sbjct: 54  ASSLAELFDCPARWEAKHILGMRMPSS-----GASHLGTAVHASTGLFDQAVLDGTPVTA 108

Query: 832 NHLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-K 888
           +     ++D+  +K  +      D           H+   +  +I      I + +   +
Sbjct: 109 DEAAGALVDTIRDKNVDVDWEDSDPAAAERIGLALHA--RYCAEIAPRQHYIGIEVACDR 166

Query: 889 MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA---QKLIDPQLSLEAAALK 945
           + I  +G+ LTG  DR+         I+D KTG                PQL +     +
Sbjct: 167 LEIPELGLALTGTTDRV-RTTEAGAGISDLKTGGRAVGTDGVATTAGHGPQLGVYELLAE 225

Query: 946 AG-SFSQIDCRKVANL 960
                      ++  L
Sbjct: 226 HALGIPISAPAQIVGL 241


>gi|187479029|ref|YP_787053.1| DNA helicase [Bordetella avium 197N]
 gi|115423615|emb|CAJ50155.1| DNA helicase [Bordetella avium 197N]
          Length = 685

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/519 (12%), Positives = 133/519 (25%), Gaps = 54/519 (10%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
               V +   ++RA QE+        G    +L  +  LG        A    S      
Sbjct: 62  DPQRVLLLTFSRRAAQEM----DRRAGG---VLRRVMQLGAAAPSLPWAGTFHSVGARLL 114

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                R       I +  +       D      L        A      L      I + 
Sbjct: 115 RDCATR-------IGLSESFTVHDRGDAEDLMGLLRHELALTATQNRFPLKGTCLSIYSR 167

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE---- 218
               ++       ++  W       LK   + + +   E +        +          
Sbjct: 168 VINSQEPLGEVLTRFFPWCAQWEAELKRLFQAYMQAKQEQHILDYDDLLLYWAEMMSDPG 227

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
               +      +++     +    A ++  +     G  V+   D       +   T ++
Sbjct: 228 IARDVSARFDYVLVDEYQDTNRLQASILLAMKPGGQGLTVV--GDDAQSIYAFRAATVRN 285

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                                +  L+      + + + SN M                  
Sbjct: 286 ILDFP----------AQFGAHVITLERNYRSTQPVLDASNAMIA---------------- 319

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADR 396
            + T+     +   +       L+   +E  +A  +A  +    +E +  K  A +    
Sbjct: 320 -QATERYAKALWTDRAATQKPELVNVSDEVGQARWVADQVLARREEGESLKSQAALFRTA 378

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK----- 451
           + +  ++LELTR  I      G+      H   L S+L         MA   +V+     
Sbjct: 379 SHSAALELELTRRNIPFVKFGGLRFLEAAHVKDLLSVLRWAENPRSRMAGFRVVQLLGGI 438

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P+      +     A   + L   R       +  + S +    A    +  +      
Sbjct: 439 GPVTAGKLMDLMAEAADPQVCLANFRTGPQWEGLAQMFSALRSEQAGWPADIDLALNWYA 498

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
              E +     +    L  +  L +    +      L++
Sbjct: 499 PLLEQRYDDAPVRRADLDQLARLASGYPTRERFLTELTL 537


>gi|39998356|ref|NP_954307.1| DNA helicase II [Geobacter sulfurreducens PCA]
 gi|39985302|gb|AAR36657.1| DNA helicase II, putative [Geobacter sulfurreducens PCA]
          Length = 1078

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 70/728 (9%), Positives = 149/728 (20%), Gaps = 181/728 (24%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
              A V     T RA  E+R     + G+ +  +  + +      +    +          
Sbjct: 506  DPARVCAITFTNRAAAEVRERLAAVAGEAAGQV-FVGTFHRFCLDWLRREEPDRV----V 560

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            V +  R   L RL                        I       LA  +AD +      
Sbjct: 561  VGDESRERLLRRL---------------------FPEIGVRERSGLAAEIADFLHR---- 595

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA--- 219
                       N       +           ++ + L    A        AL+R      
Sbjct: 596  ----------DNGGDAPEPVR----------FYLDELARRGAMDLDDVVPALVRRLRGDE 635

Query: 220  --EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +      + +            L+  +      A +    D       +      
Sbjct: 636  TFRRRVCAGVAHLFVDEFQDLNAPQYALVEILGEE---ATIFAIGDPDQAIYGFRGSDPS 692

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                 +              +    L                                  
Sbjct: 693  FFFRFADLPATRRLDLSRNYRSAAPL---------------------------VEAASAV 725

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--------------- 382
               N       +         + L  A     EA  I   +   +               
Sbjct: 726  IAHNRLRSGISLTPTTAREGAIELYRAPTPAAEAEFIVRRIEELMGGISSFSIASGRGGD 785

Query: 383  ---DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                 +    A++      A  +   L R GI   +   +P      +   T  + A   
Sbjct: 786  QDSRRSFGDIAILYRLARQADELANALDRRGIPFQLVGAVPYFLGPVAGAATRFVRAAAG 845

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
              +      L +                                D+  +    + R+   
Sbjct: 846  STELADWLALAQ--------------------------------DLPGVGEGTIRRLEEA 873

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               T          E    +A  + +        L  +++         ++ +   L  T
Sbjct: 874  LPLTGDFPALVAGVELPPPVAHRMAELT----ALLERFRSVAGREGIAPALGEALTLFGT 929

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
               +                      +   +++        + + +   +          
Sbjct: 930  DQGH----------------------ADCRRLLALAGSFGRDIVAFDRHLREYAAETVY- 966

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
               E++  + ++    S+ L F  + L G  EG+ P    ++                  
Sbjct: 967  --DERAEAVALMTLHASKGLEFPVVFLAGCEEGLIPCTLWRDV----------------D 1008

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL-KKRGQCY 738
               +    +      +  +   +  E    + A R L R                RG   
Sbjct: 1009 VEEERRLFYVGMTRAKETLVLSASSERPWVSPAERPLSRFAGEIPGRLIRQPEPGRGGRR 1068

Query: 739  LDWTRKLD 746
                 +LD
Sbjct: 1069 KPKGEQLD 1076


>gi|325673659|ref|ZP_08153350.1| exodeoxyribonuclease V beta subunit [Rhodococcus equi ATCC 33707]
 gi|325555680|gb|EGD25351.1| exodeoxyribonuclease V beta subunit [Rhodococcus equi ATCC 33707]
          Length = 1106

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 79/851 (9%), Positives = 184/851 (21%), Gaps = 104/851 (12%)

Query: 233  AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI------TEKSTNITSSNT 286
                 + P    ++         + ++   D       +             +  +    
Sbjct: 271  DEFQDTDPQQWGILRAA--FHGHSTLVLVGDPKQAIYAFRGAEVLSYLDAAGSAHSHQEL 328

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
            T +      L   L  L        R   V      +     +   P     +       
Sbjct: 329  TTNWRSDADLVAALGHLHGGAALGHRDIVVHPVSAAKQGSRLQGAAPLRLRYLSRAGAGR 388

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS-----ALITADRNLARR 401
                      +  + + AD   +    +     + L+   +       A++         
Sbjct: 389  LNNSGYPAVGALRSRVAADVAADIVELLGSGATLELNGVTRPVEPGDVAILAGTNAQIAL 448

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            V+  L R G+   ++ G  +  T  ++    +L A+ + +    +      PL  +   +
Sbjct: 449  VREALDRVGVPSVLAGGTSVFETPAATQWLQVLQALEQPHRPDRVRLAALTPLIGWTAAD 508

Query: 462  KYLS-RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                     A     LR     +      +L     A       +    S          
Sbjct: 509  VDARSDEVVARVGGQLRELATVFAQSGFAALFERLAAESGLEARLLTVASG--------- 559

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
                    + +T L        +   + S+   T LT      +   +          + 
Sbjct: 560  -------ERTLTDLRHIGQLLGAVAVDESL-GLTALTGWLTDRIKDPKSGGGDRSRRLDS 611

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
                  + +     G       + +     R  D   +    E    +  +G   S    
Sbjct: 612  DAAAVQIATVHASKGLEYPIVYVPFGWSTGRYADPNRLLLHDEHGRRILDIGGEGSPGYG 671

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG-QAAHDFEMANGTRHL-I 698
                       G   +        ++                      F    G   +  
Sbjct: 672  DRRRRRDAEAAGEDLRLLYVALTRAQCQLVLWWAPAYSTNEAPLHRMLFGREPGESDVPQ 731

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL-------DWTRKLDYTTKQ 751
                  +  +    +RW Q   V                +        +    +      
Sbjct: 732  KVGVPEDPMVAEQLTRWAQAAPVTVEVQAVGADPIPQPSWTPPQEETGELAAAVFRRELD 791

Query: 752  PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF----KKDPDRTD 807
              ++R        +       +   +            ++    +          P    
Sbjct: 792  AGWRRTSYTALTASAHEHPGVTSEAEEPEIEDEPEEPALITAAPVEGIPSTMNDMPYGAV 851

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH------------------------- 842
             GTL H I+  +     +  T  + H  + +                             
Sbjct: 852  FGTLVHEILEHVDTAADDLETELVRHCREAVAARMSQVDPVALADALLPVLRTPLAGGGT 911

Query: 843  FEKENLPPHIDIIWR----------HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                     +  +             +     H  ++   K     + +         ++
Sbjct: 912  LADITPRDRLPELDFELPLAGGDDPAVLTVTLHRIVDLLRKHLPPDDVLAPYADRLATLD 971

Query: 893  SIGIH--LTGFADRIDLL--KSG-FVDITDYKTGDNPK--------------KETAQKLI 933
               +   LTG  D +  L    G    I DYKT                    E  +   
Sbjct: 972  PTPLRGYLTGSIDAVLRLSGPDGPRFVIVDYKTNRIAPGEVTTADFTREAMAGEMMRSHY 1031

Query: 934  DPQLSLEAAALKAGSFSQIDCRKV----ANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
              Q  L A AL      ++           + Y+ ++         +    +  D  +  
Sbjct: 1032 PLQALLYAVALHRYLRWRLPGYTPETHLGGVQYLFVRG-MVGPDTPDGAGVFDWDPPAAL 1090

Query: 990  SLKNLIEIVTL 1000
             ++ L +++  
Sbjct: 1091 VVE-LSDLLAA 1100


>gi|239982169|ref|ZP_04704693.1| putative ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 708

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 64/679 (9%), Positives = 149/679 (21%), Gaps = 72/679 (10%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L   +    R +   P    SV     T RA  E+R    ++           ++     
Sbjct: 34  LTHRIAYGVRTNRFQP---TSVLAVTFTNRAAGEMRGRLRQLGAGGV----QARTFHSAA 86

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
             +              V        L RL+      + +           +        
Sbjct: 87  LRQLQYFW------PKAVGG-----TLPRLVERKAQLVAEAGAACGIRLDRNQLRDATGE 135

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
           I  AK    +                    K           L      + +   +    
Sbjct: 136 IEWAKVTQTVPGDYAE-----------SVAKSQRHAPRDPAELAQIYARYEQLKRDRGVI 184

Query: 206 SPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                 +  +    +        +      ++       P   RL+       +   V+ 
Sbjct: 185 DFEDVLLLTIGILQDRRDIADHVRAQYQHFVVDEYQDVSPLQQRLLELWLGDRDSLCVV- 243

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D       +   T +             HP+ ++ KL+       + V     + ++ 
Sbjct: 244 -GDASQTIYSFTGATPEHLLNFRVR-----HPEATVVKLVRDYRSTPQIVHLANGLLSQA 297

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
            GR+                       ++ + +    +   IE  +E  EA   A  +R 
Sbjct: 298 RGRAA------------------DHRLELVSQRDTGPEPQHIEYGDEPSEAEGTARRIRD 339

Query: 381 --SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             +      + A++      +   +  LT  G+   +                + L    
Sbjct: 340 LIAAGVPAGEIAVLFRTNGQSGLYEQALTDAGVPYQLRGAERFFERREVREAQAALRGAA 399

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
           +     A    + H LA         S       + +         +  L  L  D  A 
Sbjct: 400 RFGGNDAALD-LAHDLASQVRAVLSASGWSAQAPVGSGASRDRWESLAALARLAEDFGAA 458

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
           Q + +              + A  +                + ++  G    + +     
Sbjct: 459 QPDASLADFVTELDERAASQHAPTVQ----------GVTLASLHAAKGLEWDAVFLVGLT 508

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
             +  +      +            ++    ++  + S  +A       + +R +     
Sbjct: 509 EGMMPITYARTDEQLEEERRLLYVGITRARFRLTLSWSLSRAPGGRAHRVPSRFLKDLRG 568

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                 +S+  + GT  +                      +        +       +  
Sbjct: 569 ASATRGASSFSVAGTGGTSAGTGAPRRGPRKPIRCRTCGRSLTDAGEMKLMRCEGCPSDM 628

Query: 679 KYIGQAAHDFEMANGTRHL 697
                       A     L
Sbjct: 629 DEGVYERLHTWRAAEAERL 647


>gi|256844886|ref|ZP_05550344.1| DNA helicase II [Fusobacterium sp. 3_1_36A2]
 gi|256718445|gb|EEU32000.1| DNA helicase II [Fusobacterium sp. 3_1_36A2]
          Length = 919

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/400 (13%), Positives = 130/400 (32%), Gaps = 50/400 (12%)

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL-NEGVWPKNTAK 660
             ++++I+ +    E    +   +  +  L   +S+ L F  +I+  L        + ++
Sbjct: 540 FTKYLEILKQSRVDEIFSEEDYPNDCIPFLTIHQSKGLEFPVVIVFSLYTTPNVSGDLSR 599

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQR 718
              + R++ S+  +   +K        F +A       L+ +   +  +       +  R
Sbjct: 600 QTSIDRLINSNSKISEIDKEYFDFYRKFYVAFSRTKNLLVLSCYEKGVSENFKPFFYSVR 659

Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            +     D                  LD  +K             + +      ++I   
Sbjct: 660 GVNSLQFDIDQIN-------------LDKVSK------------KDERKILSYTTDIALY 694

Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
              P   +      +    +   D    + G + H  I  + K  + K     ++ ++ +
Sbjct: 695 RYCPMKYFL-----VREKEYSTFDKKVFNLGIITHKAIEHINKSFLQKQEIFSDNYIEDL 749

Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
           + +  + +N+    ++            +++ E+     I+K+      ++        L
Sbjct: 750 VKNIHKFQNIDLDSNV---ERIIDTVKKYIKDEKDNFKCIKKVEA-SEFRVE---DNYIL 802

Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQ--KLIDPQLSLEAAALKAGSFSQIDCRK 956
            G  D I   ++  + I D+KTG        +       QLSL    L+      I    
Sbjct: 803 YGQIDLILEDEN-EIKIIDFKTGK---YNEIEFSSNYRQQLSLYKLLLQKKYDKDIK--- 855

Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
              L+Y+   +  K   I ++  K   + +++ +   L +
Sbjct: 856 -TYLYYLEEDEPKKEIYIDDEDLKEDLENINKTTQDILDK 894


>gi|226360933|ref|YP_002778711.1| exodeoxyribonuclease V beta chain [Rhodococcus opacus B4]
 gi|226239418|dbj|BAH49766.1| exodeoxyribonuclease V beta chain [Rhodococcus opacus B4]
          Length = 1103

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 82/809 (10%), Positives = 176/809 (21%), Gaps = 99/809 (12%)

Query: 217  AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
            A A   ++   G +++     + P    ++    +     +++   D       +    E
Sbjct: 250  AAACRRVRERYGVVLVDEFQDTDPLQWDILRRTFHGNGTLVLV--GDPKQAIYAFRGA-E 306

Query: 277  KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
              + + +  +        +  +    L    E +     + +       V         T
Sbjct: 307  VLSYLDAVRSADRHQELTTNWRSDQELLDGLEYLHGGAELGHPEIVVHRVDGARPKSRLT 366

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM------------SLDE 384
                       +        S    + A  +R  A   A  + +            +   
Sbjct: 367  GAAPLRLRYLPRTGAGPINKSGYPAVGALRKRIAADLAADLVALLDGGATLDVGGTTRLV 426

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                 A++         V   L R G+   ++ G  + TT  +     +L AI + +   
Sbjct: 427  EPGDIAVLVRTNAQITVVHDALDRAGVPSVLAGGASVFTTPAAQHWLWILQAIEQPHRAD 486

Query: 445  AIATLVKHPLAKFGFPEKYL-------------------------------SRAKNALEL 473
             +      PL      E                                    A  ALE 
Sbjct: 487  RVRLAALTPLLGHTAEELDAHGDDIVAEVGAQLRELGAVFAQSGFAALFERLSAVGALEA 546

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI-- 531
              LR       + DL+ +     +     +      +R   E  +          + +  
Sbjct: 547  RLLRVAAGERALTDLRHVAQLLNSAAVEQSLGLTAVTRWLTERMKDPTTGGVDRSRRLDS 606

Query: 532  -TPLVTYKTNKNSTCGNLSISDWTKLTVTC-------LQNVCLDEHRKLPNLWFEEEGKT 583
                V   T   S      +                 L     D  R L        G  
Sbjct: 607  DAAAVQIATVHASKGLEFPLVYLPYAWDAAKISKPSKLLLHDDDGRRILDVGGPGSPGYA 666

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                     E G  ++   +     +  L+           +    ++            
Sbjct: 667  DRRNRHDAEEAGEELRLLYVAVTRAMCGLVMWWAPAFTTPAAPLHRMILGRLPGQREVPQ 726

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDL----------NLKTAEKYIGQAAHDFEMANG 693
             ++   +  V  + +A        +  +                E      A  F     
Sbjct: 727  KVIVPEDPIVAERLSAWGTAAPETVTVEAVGCEPIPRVGWTPEREPSGDLEAARFRRLLD 786

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
            TR    + S    +             V    +  +   +  +  L     +        
Sbjct: 787  TRWRRTSYSALTASAHDAP-------AVGSEAEVEEKTDEPDEPPLHAPDGVTAGV---P 836

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                +           ++  EI             R  +         D D     T   
Sbjct: 837  STMNELPGGATFGTLVHAVFEIVDTAAPDLDDEVLRCCRDVIASTLS-DVDPAQLATALV 895

Query: 814  NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
             ++   +     +   ++             + +    +          +          
Sbjct: 896  PVLRTPLGAGAERTLADLAPA------DLLAELDFELPLAGGDTPSLTVMLDGVGRLLRT 949

Query: 874  IQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYKTGD--------- 922
                 + +     A   +E   +   LTG  D +  L      + DYKT           
Sbjct: 950  HLPENDPLRSYADAVQTLEPTPLRGYLTGSIDAVLRLPGPRYVVVDYKTNRLAQGDLTTA 1009

Query: 923  -----NPKKETAQKLIDPQLSLEAAALKA 946
                 +   E  +     Q  L + AL  
Sbjct: 1010 HYTRGSMAAEMLRAHYPLQALLYSVALHR 1038


>gi|148242655|ref|YP_001227812.1| exodeoxyribonuclease V beta chain [Synechococcus sp. RCC307]
 gi|147850965|emb|CAK28459.1| Exodeoxyribonuclease V beta chain [Synechococcus sp. RCC307]
          Length = 1189

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 78/730 (10%), Positives = 173/730 (23%), Gaps = 66/730 (9%)

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL--MRAEAEHLMKGT 226
            L  L +      W           +   + +   +    V        + A  +   +  
Sbjct: 327  LTDLVHALRQGAWQR---------RQLKQEMSFGDLLERVDPARLSPPVLAGLKQWRQQQ 377

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
                +I     + P   RL + + +    A +    D       +     ++     S  
Sbjct: 378  LSCCLIDEFQDTDPIQWRLFAALFDGE--APLTLIGDPKQAIYRFRGGDIRTYRSAVSTP 435

Query: 287  TYS----THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                      + S   LL  L+         G+ + +          S      +D    
Sbjct: 436  ERQRFSLDTNRRSDPALLSVLNRLFAGEGSFGSPTIDYRMVQAPEHASPSRLRCADGSPA 495

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM-------------SLDENKKKS 389
              +  +          + L E  +   +   +   L+                  +    
Sbjct: 496  PPVRMRWLGEADGGKPLKLGELRDSLPQ--RVCDDLQRTLSSGMELQQGDGWRALHPGDL 553

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            A++      A  ++ EL R GI   I  G  L  +  ++ L+  L +  +  D  A A L
Sbjct: 554  AVLVGRNREAVALQRELQRRGIPARIGRGGDLWQSPEAASLSLWLESSERQGDRRAAAAL 613

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
                +  F   E                   +  D       +            +   +
Sbjct: 614  ALSSVGGFLAAELS---------------GWSPSDWGAWLQQLEQARQRYALVGPLAALE 658

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
               +       +    +  Q ++           +  +       +L     +       
Sbjct: 659  VVQAAGPGLPRLRGQANGEQRLSDRRQMAELLQQSWQDQGRPSAARLLHWLNEQQLFGGE 718

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
             +          +++ +L +     G          +  +   +D E      + S    
Sbjct: 719  GEDAQQRIV-ASESMVTLTTLHSSKGLEFPLVWCPTLWEVDGGVDAEAPFRAWDPSQQRR 777

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF------------LSRVMQSDLNLKTA 677
            +L        +     L       W +                     R+  S  +L   
Sbjct: 778  VLELSRRSGSSPRAERLMEARLEGWQERLRLGYVALTRAKHQLCLDWGRIKDSGASLPAW 837

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ-RLLVLGGTDFFDNLKKRGQ 736
              +      + E          +R+             L   L  L              
Sbjct: 838  LLHPELRQQEAEQPWQAIADHISRASDLRQALQHRCDELGIHLEDLNPEAPPAYRPAANT 897

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
              L     +    +         +  L  Q +T S S  ++   DP    +         
Sbjct: 898  QPLAAAAAMIPPRRPFSSWGRWSYSRLHDQSQTLSPSAREEEGFDPDRESSPEDPGGAED 957

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
            P +++ P     GTL H I+ +L     +      +  ++Q++     +  L P +    
Sbjct: 958  PCWRELPGGASFGTLVHAILEQL-----DFEADLSSPEVRQLVRDEVARSGLDPQLSNSL 1012

Query: 857  RHLFHKISHS 866
                  +   
Sbjct: 1013 LGAIEVLLQR 1022


>gi|303247358|ref|ZP_07333631.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
 gi|302491272|gb|EFL51161.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
          Length = 725

 Score = 62.6 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 80/757 (10%), Positives = 192/757 (25%), Gaps = 131/757 (17%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    +   + +  A++ +   T++A QE+           +     + S+      
Sbjct: 34  RTIVYRLAHLVSDGVDPAAILLLTFTRKAAQEM---LTRAGMLLAMGPSGVASVSGGTFH 90

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
            F    L  Y+      +   +L+ A    I       +       S             
Sbjct: 91  AFAFATLRRYHAAAGFPDGFTVLDQADSEDILGQAKDTLGIGKGDRSFPRK--------- 141

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
               +  ++     +E    D+ + +      +    A  +    + +T    E      
Sbjct: 142 --SAVLGLLSKARNKELDVGDVLSREAFHLLPY----AGDIARIGERYTAFKAENRLLDY 195

Query: 208 VGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                 L R   EH       +     +++     +    ARL   +A  P    V+   
Sbjct: 196 DDLLFTLERTLTEHPDLLDYLRQHHRYVMVDEYQDTNRVQARLTRLLA--PTSGNVMAVG 253

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       +   T  +                    L+  L+      + + +++N +  
Sbjct: 254 DDAQSIYAFRGATVDNILDFPELFPG---------TLVVKLEQNYRSTQPILSLTNAILQ 304

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            +       L     D    ++L                    +  + A++ A    +S 
Sbjct: 305 NAGRKYDKKLFTTREDGPQPELLRP----------------FSDLTQAAMAAAKIRELSS 348

Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                + A++      +  +++EL + GI      G+  S   H   + S L  +    D
Sbjct: 349 RYPLHEIAVLFRAGYQSYALEVELGKTGIPFQKFGGLKFSDAAHVKDVLSYLRLVRNTAD 408

Query: 443 FMAIATLVKH-PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
           F A + ++   P        K  +  ++    V  +    S +   L   +    A   +
Sbjct: 409 FPAWSRVLAFVPGIGPKTATKIFNAIQSGDRAVLGKMAAKSQEFRALIEFLDTLRALPPS 468

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                                L++ +++   PL                           
Sbjct: 469 P------------------AQLLERVIEAYAPL-------------------------LA 485

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
           +    D  R+   L   ++     +    ++                   +++      K
Sbjct: 486 EKYPEDYPRRQAGLEQLQQIAAAYADLDAMLADL----------------VLENPDEDRK 529

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
             +   + +     ++ L +  +++  L +  +P              S   L   E   
Sbjct: 530 KTREDHVVLSTVHSAKGLEWSAVLVIDLVDERFP--------------SRHALSRPEDLE 575

Query: 682 GQAAHDFEMANGTRHLI-------YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            +    +      R  +         +       P + S +L+ L      +  + L   
Sbjct: 576 EERRLLYVACTRAREHLTLFAPETIYQRQTGGCAPALPSIFLRELPPGTLPERRERLGGG 635

Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
                               +  +P            
Sbjct: 636 SAAAFAACPPPSAPATAVRSRLTRPAEAPHLTGAPAP 672


>gi|323526899|ref|YP_004229052.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
 gi|323383901|gb|ADX55992.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
          Length = 741

 Score = 62.6 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 53/450 (11%), Positives = 131/450 (29%), Gaps = 54/450 (12%)

Query: 12  APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE----I 67
            P +        +    TL        +       + +   ++RA  E+           
Sbjct: 68  PPGALLVIAGAGSGKTNTLAHRVANLMVKGADPRRILLLTFSRRAALEMTRRVTRIATAA 127

Query: 68  TGKKSTI---LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
            G ++ +   L    +   V       +      L P  +   R    A L+ + R++L 
Sbjct: 128 LGTRAALAQGLSWAGTFHSVGARLLR-EYAELIGLAPAFTINDREDS-ADLMNLVRHELG 185

Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE-DLHALKNEKYGMWWLL 183
              K+    +  +     +  +    +L  +++      ++WE DL  L           
Sbjct: 186 LSAKERRFPAKGTCFAIYSRVVNTGASLGQVLESAFPWCREWEADLRMLFAAYVDAKQKQ 245

Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243
           +         YW+    E                     +      +++     +    A
Sbjct: 246 SVLDYDDLLLYWSHMAAEP---------------AIAADLSARFDHVLVDEYQDTNRLQA 290

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            ++  +   P+G  +    D       +   T ++     +        Q+        L
Sbjct: 291 SILLALK--PDGRGLTVVGDDAQSIYSFRGATVRNILDFPA--------QFDPPATRITL 340

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
           +      + +   SN +   +       L  D +  +                    L+ 
Sbjct: 341 ERNYRSTQPILAASNAVIELASERYTKNLWTDKASAQRP-----------------RLVT 383

Query: 364 ADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
             +E ++A  +   +  + ++    K  A++    + +  +++ELTR  I      G+  
Sbjct: 384 VADEADQARYVVEQILEAREQGMKLKSQAVLFRAAHHSAALEIELTRRNIPFVKFGGLKF 443

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVK 451
             ++H   + ++L       D +A   +V+
Sbjct: 444 LDSIHVKDVLAVLRWAENPRDRVAGFRVVQ 473


>gi|120602213|ref|YP_966613.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
 gi|120562442|gb|ABM28186.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
          Length = 1152

 Score = 62.6 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 72/764 (9%), Positives = 150/764 (19%), Gaps = 76/764 (9%)

Query: 226  TKGPIIIAGSTGSIPATARLMS--TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                I++     +       +    V     G  +    D       W        +   
Sbjct: 372  RLAHILVDEFQDTSKDQWAAIQPLAVECLSRGGSLTWVGDVKQAIYGWRGGDSALFDAVL 431

Query: 284  SNTT-------YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
             +           +       +    +     DV  L             +     PPD 
Sbjct: 432  RDGELLAIAGDGISGTLPRNWRSRPEIVHFNNDVFALLGDEAHATTVLRAMLPEGTPPDV 491

Query: 337  ------------SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---- 380
                        +             + ++ F  +  + A +  E    +   LR     
Sbjct: 492  FSEAVDELARAFTGAAQETPPRGDDESQEEGFVRLTHVAAFDSEELDAEVKTTLRSLFMG 551

Query: 381  --SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              +L    +  A++      A RV   L  + I +     + L+     S   +LL  + 
Sbjct: 552  DLALRRRWRDVAVLVRTNGEAGRVATWLMEWDIPVVTENSLRLADHPLISQTVALLGFLD 611

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
               D +A       P          L      L+  A+           L +   D    
Sbjct: 612  YPRDDLAFWEFAAGP---------ELLGDAAGLDAPAMDDWLAEGGRGPLFTRFRDAFPA 662

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLT 557
                   P +         +    +          P       +     + +        
Sbjct: 663  VWRRWIAPFYSRAGLMSVYDTVREVYTRFRVFDRYPEDAGFLRRFLEVVHAAEGQGLVSL 722

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
             T L         +   +    +   + ++          +        D          
Sbjct: 723  STFLDFWKRTGGDEKVPMPEGMDAVRVMTMHKAKGLEFPVVVIPFHHQADRADDTPVRME 782

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            V+           +G                +    W +   +        ++       
Sbjct: 783  VEGLDLLVPRCPEMGKPYYEAFAASVREQLHVLYVAWTRPVEELHAFITERKTGKGRSAL 842

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
             + +           G      T          +A    + +                  
Sbjct: 843  LEGLKV----LLGLCGVPETWGTWERGTIPASALADSTTETMPEGRPDQPESTPHAMASP 898

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR--------- 788
             L  +   D              PP  A     S +  +   +D  ++            
Sbjct: 899  TLADSAPADAAPVVLAPAAQTVPPPQPAASACASETAPQATGHDTPSLMVDAAASIPAPA 958

Query: 789  -------------RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
                           LK+      +       RG L H  +  L          E     
Sbjct: 959  STPDDDWRPMQWLPRLKIFRNQLEEFTFTERRRGMLVHACLEAL---HPTGAPREDAARA 1015

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
             +     F                   +   +    E   +   +        +  +   
Sbjct: 1016 VRHGIRAFPLPVPDEDAVAAE---LTTMLEWYAAQPET--AHWLRHGTPEQGILDAQG-- 1068

Query: 896  IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
              L    D + +       + +YKTG        Q      L L
Sbjct: 1069 -RLH-RTD-LFVDDGNVRVVVEYKTGAPSPDHIEQVHRYLSLLL 1109


>gi|134097652|ref|YP_001103313.1| hypothetical protein SACE_1056 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910275|emb|CAM00388.1| hypothetical protein SACE_1056 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 276

 Score = 62.6 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 44/154 (28%), Gaps = 10/154 (6%)

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
             + + +      P       + +             +  G + HN++    + R  K T
Sbjct: 16  RVTPARLANWAQCPRKYRMTYLDRPTP--PRAGAWAHSTLGAVVHNVLRAFFELRPGKRT 73

Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
           PE   ++ +         +              +       + E +      + V     
Sbjct: 74  PEQVPVLLRRYWKSDGFADAEQVARHR-----RRAQEWLTSYVEGLDPDAAPVAVERWVS 128

Query: 889 MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
             +    I   G  DR+D    G + + DYKTG 
Sbjct: 129 APM--GSIIAEGRVDRLDERG-GELVVVDYKTGR 159


>gi|254426856|ref|ZP_05040563.1| exodeoxyribonuclease V, beta subunit [Alcanivorax sp. DG881]
 gi|196193025|gb|EDX87984.1| exodeoxyribonuclease V, beta subunit [Alcanivorax sp. DG881]
          Length = 1198

 Score = 62.6 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 74/801 (9%), Positives = 179/801 (22%), Gaps = 63/801 (7%)

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR----AEA 219
                    L               +         +   +     +      ++       
Sbjct: 325  MDGRANTQLPRTDLLAHAAAW---IDRRVDQVRRQTATMGFDDMLSRLHDALKGGNGERL 381

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
              +++      +I     + P    +   +     G       D       +       T
Sbjct: 382  AQVIRDQFPVALIDEFQDTDPTQYGIFCALYEGQEGTGWFMIGDPKQAIYAFRGADVF-T 440

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS-----NEMYGRSMVISKSFLPP 334
             + +   T   H  Y+L K     D     V  L + S     +     + +  ++    
Sbjct: 441  YLKARRATEGNH--YTLDKNFRSADAMVHAVNHLFSYSQNTFGDVFMMDNAIPFEAVQAN 498

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD----------- 383
               D+   D  E     +     +  +       E+A   A  +   L+           
Sbjct: 499  GRKDVLLVDNNEKSGITLWVDEQEKPVSAGQYRDEQAARCASEIAHLLNGAVKGVTGFQK 558

Query: 384  ------ENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                   +    A++  DR  A+ ++  L  R   ++ +S    +     +  L  +L+A
Sbjct: 559  TDSFRPLHPNDIAILVRDRTEAKAIRDALMERQVRSVYLSDQDSVFAQPEAHDLLLILHA 618

Query: 437  IFKLNDF---MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                       +        LA            +    +    G +  +    +  ++ 
Sbjct: 619  CATPESDTRVRSALACAVLDLAYAELDALNQDEVRWEETVEQFHGYRQQWQTQGVLPMLR 678

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKEL-AVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
              +        +             L    L+      +    +       T      S 
Sbjct: 679  SLLMDFHVPARLSQSLDGERALTNLLHLAELLQQAATQLDGEQSLIRYLEDTVEEGRGSS 738

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
               +      +  +       +   E     L  + S      +       E   +   L
Sbjct: 739  KESILRLESDDDRVKVITIHKSKGLEYPLVYLPFICSFRPADKNKPPLRYHENDHLNVSL 798

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
               ETV+ K +       +  L   L         G+   +  +        S + +   
Sbjct: 799  EPDETVENKADHERLAEDMRLLYVALTRACHTCTLGIAPYIKGRGKQNQLEKSAIGRLLF 858

Query: 673  NLKTAEKYIGQA----AHDFEMANGTRHLIYTR-----SLRENNIPTIASRWLQRLLVLG 723
                A   +  A    AHD                     R    P I     ++   + 
Sbjct: 859  GNGVANDGLRAALTPVAHDAVAIINAPDSNPECYQPKAQARPLRTPLIPVARQRQPWWIA 918

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE---IKQLIN 780
                   +++          +L            +P P         +         L  
Sbjct: 919  SYSALKQVQETLAPADPRGDQLAEQQDDTVIDDAEPLPDTIHAFPRGAAPGTLLHDVLEQ 978

Query: 781  DPYAVYARRILKLDFIPH-FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                 + + +          ++             I     +        E + +    +
Sbjct: 979  AANQSFTQTLADPAEFETSVEEKLQARGWQDFMEVIRHWWKQAVTTSLPLENDRIALNTL 1038

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
             ++  +         +       +    +  +                ++  +++   L 
Sbjct: 1039 HTYVPELEFLFPAHQVKVAEMDTLIRQHIHPQHPRP------------RLEADTLNGMLK 1086

Query: 900  GFADRIDLLKSGFVDITDYKT 920
            GF D +     G   + DYK+
Sbjct: 1087 GFIDLVFEH-DGKYYVLDYKS 1106


>gi|294785293|ref|ZP_06750581.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
 gi|294487007|gb|EFG34369.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
          Length = 903

 Score = 62.6 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 80/270 (29%), Gaps = 44/270 (16%)

Query: 778  LINDPYAVYARRILKLDFIPHF--KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            L  D    +  +I  +                 G + H  + E+ ++          +L+
Sbjct: 634  LKKDETFFFLDKICGIKSSDEIVADIGISAKVLGNILHKTLEEIFRENWKNILQSSENLL 693

Query: 836  K--QIIDSHFEKENLPPH----------IDIIWRHLFHKISHSF--LEHEEKIQSSIEKI 881
                II+ + ++                I+ +           F  + +EE     I +I
Sbjct: 694  ISNDIIEKYLKRNIWKEELKIEIFMKNYINEVLTPRLVSNIEKFFKVLYEELKGEKILRI 753

Query: 882  FVNIPAK------MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935
                 +K      +  + I + L G AD +         I D+KTG    K+        
Sbjct: 754  EAEKKSKTQDRAYLKYDEIEVFLNGRADLLIETS-KARYIVDFKTGG--YKKE------- 803

Query: 936  QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
            QL   A                    +       + +      +K+  D+L EK      
Sbjct: 804  QLEFYAIMFY--GSDNSLPVYSTAYNFW-----DEQEAKNFKFEKHLIDKLPEK-DSQFK 855

Query: 996  EIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
            E++      +     ++   + +  +S+YD
Sbjct: 856  ELLIEFFKNK----YYILPKKSALKESDYD 881


>gi|34764247|ref|ZP_00145098.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
            49256]
 gi|27885981|gb|EAA23306.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
            49256]
          Length = 437

 Score = 62.6 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/398 (12%), Positives = 112/398 (28%), Gaps = 57/398 (14%)

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
             A N   +   +  L LKT E  I    + F     + + I   SL + +     S ++ 
Sbjct: 45   KANNNLFTEQQKIKLGLKTNEDEILTQKYRFFQNLLSLNKIDIYSLVDKDNNIDFSAFIY 104

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP--------FPPLEAQPRT 769
              +       +  L+        + + +    K  ++ + +             +     
Sbjct: 105  EFINK-----YTALENNTDNLKQYFKAIYSKEKTDNFFKDETFFRAYSKDKSDFKDNILK 159

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHF--KKDPDRTDRGTLFHNIITELIKKRINKN 827
                +  +L  +    +  +I  +                 G + H  + E+ ++     
Sbjct: 160  IGAYDYIELKKNETFFFLDKICGIKSSDEIVADIGISAKVLGNILHKTLEEIFRENWKNI 219

Query: 828  TPEINHLMK--QIIDSHFEKENLPPH----------IDIIWRHLFHKISHSFLEHEEKIQ 875
                 +L+     I+ + ++                I  +           F +   +  
Sbjct: 220  LLSSENLLISKDKIEEYLKRNIWKEELKIESFMTNYIKEVLTPRLVFNIEKFFQVLYEEL 279

Query: 876  SSIEKIFVNIPAKMAI--------ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
               + + +    K  +        + I + L G AD +         I D+KTG    K+
Sbjct: 280  KGEKILRIEAEKKSKVQDKAYFKYDEIEVFLNGRADLLIETS-KARYIVDFKTGG--YKK 336

Query: 928  TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
                    QL   A                    +       + +      +K+  D+L 
Sbjct: 337  E-------QLEFYAIMFY--GSDNSLPVYSTAYNFW-----DEQEAKNFKFEKHLIDKLP 382

Query: 988  EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
            EK      E++      +     ++   + +  +S+YD
Sbjct: 383  EK-DSQFKELLIEFFKNK----YYILPKKSALKESDYD 415


>gi|108797875|ref|YP_638072.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
           sp. MCS]
 gi|119866969|ref|YP_936921.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
           sp. KMS]
 gi|108768294|gb|ABG07016.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
           sp. MCS]
 gi|119693058|gb|ABL90131.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
           sp. KMS]
          Length = 1115

 Score = 62.6 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 79/813 (9%), Positives = 171/813 (21%), Gaps = 59/813 (7%)

Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
           +L+    +   +I+ DLY          P      A  LA         E        L+
Sbjct: 155 QLVESLDDLTAEIVDDLYLAHFGQQRDDPVMTRGQALELAR--------EVVGNAGTELR 206

Query: 174 NEKYGMWWLLAAD--FLKIASKYWTERLVELNASSPVGYQIALMRAE------AEHLMKG 225
            +        AA   F K        R   L           L  A       A   M  
Sbjct: 207 PQNPPPETEAAARVEFAKAVCAELERRKRRLGILHYDDLLSRLANALTGEDSPARTRMHR 266

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS---TNIT 282
               +++     + P   +++         + ++   D       +      +      T
Sbjct: 267 RWSIVMVDEFQDTDPVQWQVLDRA--FTGRSTLILIGDPKQAIYAFRGGDIATYLHAAST 324

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
           + +         S   L+D L +   D +            +            +D    
Sbjct: 325 AGHRQTLGTNWRSDGDLVDRLQVVLRDAELGDPEIVVRPVEARHKGHRLAGAPHNDPFRL 384

Query: 343 DILENKIPNIQ-KCFSDVALIEADNEREEAISIAIALRMSLDENKK-----KSALITADR 396
            I+      I+      +  +      + A  I   L        K       A+I    
Sbjct: 385 RIVSRDTFGIRGDRTIPIDRLRPHISADLAADIGRLLASGATFCDKKIEAKDIAVIVEKH 444

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             AR     L+  GI    +    +  +        LL A  +      +       +  
Sbjct: 445 KDARACFDALSVAGIPAVYTGDSDVFNSPAGDDWLCLLEAFDQP-HRSGLVRAAATTMFF 503

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
               E+  +R     + +A R  + +    +     +   A                   
Sbjct: 504 GRTAEELAARGDRLTDEIADRLREWADHARERGVAAIFEAANMTGMGRRVLSWRDGERHM 563

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD--------- 567
            +LA L                  ++                  L N             
Sbjct: 564 TDLAHLTQVLHETAHREHFNLPALRDWLRTQREERSGATERNRRLDNDAAAVQIMTVWVS 623

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
           +  + P ++              ++      +   I   D           + +      
Sbjct: 624 KGLQYPVVYLPFAFNRNIQTRDCVLFHDDRTRCLHIGGDDSPDHAQVERLGRKEAAGDDI 683

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
                 L               +E     +      L      +  +            D
Sbjct: 684 RLTYVALTRAQSQVVAWWAPSWDEPNGGLSR----LLRGRAPGETTVPDRCDPPKLDDAD 739

Query: 688 FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
              A      +    L ++ I   A+  L+          F            ++  L  
Sbjct: 740 ARTALRAWADLGGPVLEDSEIAAPAAPELREHPTDLDVRHFHRGIDTAWRRTSYSGLLRA 799

Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
               P        P +       +   + +                       + P    
Sbjct: 800 AEGSPAVAGVTSEPEVGELDDEAAEVPVSE----------SHTDVDPVPSPMAELPTGAK 849

Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW---RHLFHKIS 864
            G+L H ++        +    ++   ++  I  H     +    + +      +     
Sbjct: 850 FGSLVHAVLE-----HADPFAADLKAELEHRIREHMVWWPVDVEAEALADALLPMHDTPL 904

Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
                +    Q         +  +  +    + 
Sbjct: 905 GPLAPNVTLRQIGPRDRLRELDFEFPLAGGDVR 937


>gi|149199129|ref|ZP_01876168.1| hypothetical protein LNTAR_16373 [Lentisphaera araneosa HTCC2155]
 gi|149137726|gb|EDM26140.1| hypothetical protein LNTAR_16373 [Lentisphaera araneosa HTCC2155]
          Length = 277

 Score = 62.6 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 61/189 (32%), Gaps = 23/189 (12%)

Query: 770 YSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
           +SFS +  ++N         RI K       +  P     G  FH   + L     +   
Sbjct: 16  WSFSALNSILNICSMQYAFGRIYK----EIPEFVPMNLVFGKAFHRGASYLYNLHKDMQE 71

Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRH---------LFHKISHSFLEHEEKIQSSIE 879
           PE  + +        + E      D+                ++  +  E+        E
Sbjct: 72  PE-ENELNDFFAHALQTEVNDSRFDVPLAEGKEIDDYILKGQEMLQALAENL---DPDDE 127

Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE-TAQKLIDPQLS 938
            +  ++P ++ +      L G  D +   K G + I D+KT     K    +   D Q +
Sbjct: 128 VVDTDVPFRVNLPGSK-PLIGEFDAVVENK-GRIIIVDFKTSA--SKWPAIKCHKDLQAT 183

Query: 939 LEAAALKAG 947
               AL+ G
Sbjct: 184 AYLYALRQG 192


>gi|260185509|ref|ZP_05762983.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis CPHL_A]
 gi|260203798|ref|ZP_05771289.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis K85]
 gi|289446185|ref|ZP_06435929.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis CPHL_A]
 gi|289573232|ref|ZP_06453459.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis K85]
 gi|289419143|gb|EFD16344.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis CPHL_A]
 gi|289537663|gb|EFD42241.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis K85]
          Length = 1094

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 90/823 (10%), Positives = 177/823 (21%), Gaps = 125/823 (15%)

Query: 185 ADFLKIASKYWTER---LVELNASSPVGYQIALMRAE---AEHLMKGTKGPIIIAGSTGS 238
             F     +    R   L     +  +      + A    A   M+     +++     +
Sbjct: 208 LRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPARDRMRERWRIVLVDEFQDT 267

Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT---EKSTNITSSNTTYSTHPQYS 295
            P   R++    +  +  I++   D       +             T+           S
Sbjct: 268 DPMQWRVLERAFSRHSALILI--GDPKQAIYGFRGGDIHTYLKAAGTADARYTLGVNWRS 325

Query: 296 LAKLLDFLDIKRED------------------VKRLGNVSNEMYGRSMVISKSFLPPDTS 337
              L++ L     D                    RL +       R  V+ +  L  D +
Sbjct: 326 DRALVESLQTVLRDATLGHADIVVRGTDAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGT 385

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397
                + L   IP+         L          +  A              A+I     
Sbjct: 386 AHVPIEALRRHIPDDLAADVAALLASGATFAGRPVVAA------------DIAVIVEHHK 433

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            AR  +  L   GI    +    +  +  +     LL A         +          F
Sbjct: 434 DARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSGLVRAAACT--MFF 491

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G   + L+   +AL        +   D    + +     A Q           R  E D 
Sbjct: 492 GETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVLSQRGGERDL 551

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                +   +         ++       G   + DW +                   L  
Sbjct: 552 TDLAHIAQLL---------HEAAHRERLGLPGLRDWLRRQAKA----GAGPPEHNRRLDS 598

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +     + ++F         ++   +       R +  + +    +  +    +G  +  
Sbjct: 599 DAAAVQIMTVFV-----AKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIG-GKDG 652

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEMANGTR 695
                T+      E            L+R           T ++  G  +          
Sbjct: 653 GAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLL-RGRRPG 711

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD-----------NLKKRGQCYLDWTRK 744
                           A     +    GG    +            +   G     + R+
Sbjct: 712 QSQVPDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRR 771

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
           +D T               EA   T   +   +      AV+A      D        P 
Sbjct: 772 IDTT--WRRTSYSDLVRGSEAVTVTSEPAAGGRADEVEIAVFAAPGSGADLTSPLAALPS 829

Query: 805 RTDRGTLFHNIITELIKKRINKN--TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
               G+L H ++        +                    +   L P +      +   
Sbjct: 830 GASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDT 889

Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH------------------------- 897
                       Q  +      +  +M +    +                          
Sbjct: 890 PLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPL 949

Query: 898 --------------------LTGFADRIDLLKSGFVDITDYKT 920
                               L G  D +  L      + DYKT
Sbjct: 950 SPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKT 992


>gi|330465621|ref|YP_004403364.1| hypothetical protein VAB18032_08230 [Verrucosispora maris
           AB-18-032]
 gi|328808592|gb|AEB42764.1| hypothetical protein VAB18032_08230 [Verrucosispora maris
           AB-18-032]
          Length = 315

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 57/207 (27%), Gaps = 12/207 (5%)

Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                 G+              +        F  +  +    + S++    + P      
Sbjct: 2   RRPSPTGRPAGRPAAGGRTPRPRDAQPEQLGFDGMPERLFVCTPSKLGAYADCPRRYRYT 61

Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
            + +           +    G   H  +        ++  PE+   +  ++   + ++  
Sbjct: 62  YVDRPAPPKGPPWAHN--SLGASVHTALKNWYALPTDRRRPEV---LPTLLKGTWVRDGY 116

Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908
                   R ++ +       + + +  + E + V     +    +     G ADRID  
Sbjct: 117 RDD--EQEREVYRRALGWLEAYVDGLDPADEPVGVERVVAVKTGVLAF--NGRADRIDGR 172

Query: 909 K--SG-FVDITDYKTGDNPKKETAQKL 932
               G  + I DYKTG         + 
Sbjct: 173 AGSDGPELVIVDYKTGRTGLDSDDARG 199


>gi|288560440|ref|YP_003423926.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
           ruminantium M1]
 gi|288543150|gb|ADC47034.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
           ruminantium M1]
          Length = 1565

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 89/320 (27%), Gaps = 36/320 (11%)

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNE--------GVWPKNTAKNPFLSRVMQSDLNL 674
           ++S  + ++   +S+ L F  +IL  LN           + +    N  L          
Sbjct: 650 DESEGVQLMTVHKSKGLEFPVVILLSLNHKKFPSQYKDEYDRFYTPNSCLEYKNYDSKEE 709

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI---------ASRWLQRLLVLGGT 725
           +  +    +    +      + ++   +L +                S+  +  ++    
Sbjct: 710 EIQDYLEEEDRIVYVAMTRAQDILVLSNLIKETPELEGLKAELNDNLSQIEKIEIIKDIP 769

Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                +       L   + L+    Q      +     +      SF  ++  +  P+  
Sbjct: 770 KGHIKIHDLINRNLSSCKFLEDDFSQLPKTVCEKPQVKKEDFLNLSFYSLENYVACPFKY 829

Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-----TPEINHLMKQIID 840
                +                RG   HN++  +  +  +         E+  + ++   
Sbjct: 830 KLMHDINFSESTMEFNKL----RGLFVHNLLETINNRIRSNGNRYIGDDEVLAIFER-FQ 884

Query: 841 SHFEKENLPPHIDIIWRHLFHKISH-SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899
             F  ENL              I     L +          +   +   +  E  G  L+
Sbjct: 885 DSFRFENLRLSKKEY------DIIKNDVLYYYNTFGKDFNILNTELSFSIKKEYYG--LS 936

Query: 900 GFADRIDLLKSGFVDITDYK 919
           G  D I   K G + I DYK
Sbjct: 937 GIIDLIYKTKDGKMGILDYK 956


>gi|291437395|ref|ZP_06576785.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340290|gb|EFE67246.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 648

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 75/262 (28%), Gaps = 38/262 (14%)

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
           R      T       +  +    W R LD    +  + R            + + SE+ +
Sbjct: 390 RPRSAEETGAPRLTPEEARTVASWDRDLDALAGELLHTRASVTEVPLPA--SLTASELMR 447

Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
           L  DP    AR + +    P          RGT FH  +                   ++
Sbjct: 448 LAADPDGF-ARELARPMPRPPQ----PAARRGTRFHAWVE---------------ARFEE 487

Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
           +     E + LP     I      +        E    +      V  P +++I      
Sbjct: 488 LTLPMLEPDELPGSTAEIADERDLQALKD--AFERTEYAHRTPYRVEAPFQLSIAGR--V 543

Query: 898 LTGFADRIDLLKSG---FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
           + G  D +     G     +I D+KTG     +        QL++   A        +  
Sbjct: 544 VRGRIDAVYKEGDGDGATYEIVDWKTGRARTADP------LQLAVYRLAWAEQ--QGVPP 595

Query: 955 RKVANL-FYIRLKQKFKIDCIT 975
             V     Y+R  +  + D + 
Sbjct: 596 ESVGAAFLYVRTGEVERPDPLP 617


>gi|323483653|ref|ZP_08089037.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163]
 gi|323403080|gb|EGA95394.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163]
          Length = 611

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 55/613 (8%), Positives = 138/613 (22%), Gaps = 74/613 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           A + +   T+ A +E++  +I +TG  S +     +   +           +      + 
Sbjct: 48  ADILVITFTRAAAEEMKERYIRLTGNASRV--TFGTFHSIFFRILKLAYRYT---AQNIV 102

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
             ++ ++  R +        +   +        +       I L            +   
Sbjct: 103 RPEQQMQFIRELAGKEELELEDENEFISSILSEISSVKGEMIDLRH--------YYSRNC 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG-----YQIALMRAEA 219
             E                     +     + E++  L             Q+ L R + 
Sbjct: 155 PDET-------------------FRRICSGYEEQMRRLGLIDFDDMMVMCRQLFLERQDI 195

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +     I+I            ++  +A   N   ++   D       +     +  
Sbjct: 196 LAAWQRRYRYILIDEFQDINRLQYEIIRMIAEPENNLFIV--GDDDQSIYRFRGAKPEIM 253

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                +   +                              +        +   P      
Sbjct: 254 LGFERDYPGAGRIL--------------------------LDVNYRCTEEIAGPAMRLIE 287

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR--MSLDENKKKSALITADRN 397
            N      KI         +      +  EE   IA  ++   +        A++    +
Sbjct: 288 NNEKRFSKKIRTNGARGKQIITRIWQDSFEENNRIAEEIKAYQAAGYRYGDIAVLYRTNS 347

Query: 398 LARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             R +  +L  + +       +P L     S  + + +       +      ++  P   
Sbjct: 348 GPRLLMEKLMEYNLPFKARDSVPNLYEHWISRNILTYIRIALGSRERADFLQIINRPKRY 407

Query: 457 FGFPEKY-----LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
                        +  +          ++      DLK++         N          
Sbjct: 408 ISRDSLRNPQVSFNELREWYHDKDWVADRIENLEYDLKAVSRMSPLAAVNYIRQGVGYDG 467

Query: 512 LSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
             EE      +  + + +    L  +    K        I D+ +      Q    ++ +
Sbjct: 468 FLEEFAAGRRMKPEELFETADQLKESAAGFKTFEEWFRHIEDYGEELKRQAQAGLKEKSQ 527

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
               L      K L      I++    +  +    +D                    L +
Sbjct: 528 DAVTLATMHGSKGLEFKIVYILDANEGVTPHGKAALDEDMEEERRLFYVAMTRARERLHV 587

Query: 631 LGTLESRLLNFDT 643
               E      + 
Sbjct: 588 YAVKERYHKKAEL 600


>gi|220903308|ref|YP_002478620.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
            str. ATCC 27774]
 gi|219867607|gb|ACL47942.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
            str. ATCC 27774]
          Length = 1174

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 62/720 (8%), Positives = 153/720 (21%), Gaps = 110/720 (15%)

Query: 28   GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
              LV   ++          +     T+RA  E+R             LP   +L  +   
Sbjct: 548  RVLVGRIQHLLDQGTAPHKLLAVTFTRRAANEMRQRLAAALPH-MQDLPCCDTLHGLAWG 606

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
            +  A                        +L+  +          P+            + 
Sbjct: 607  RMRAVTQAQGQ---------------ECLLLGEDAALRFFMAANPQLQAREARELWRQLS 651

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            LA+     +                    +      A +              +      
Sbjct: 652  LARETRHTL--------------------HAGH--AALELAAARYTARKAEQPDFRYVDY 689

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                   +    +         +++       P    ++  +   P+G+      D    
Sbjct: 690  ADLLDWWLDHLDDLPRDMLPQHVLVDEVQDLSPVQLDIIRGML-PPDGSGFFGIGDPDQA 748

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               +  ++ +S     S                               +S    GRS   
Sbjct: 749  IYGFRGVSGQSEASLRSI---------------------------WPGLSVYCLGRSFRS 781

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
            S++ L    S + +       +   Q   + + L  A +++ E   I+  ++  L     
Sbjct: 782  SQAVLNMAHSLLLHKGQCGP-LTAAQSLNAQLRLFSAPDQQAELRWISRRVQALLGATGH 840

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
                   D+        EL       DI+  + L   +    L + L             
Sbjct: 841  TLL----DQQQNSAEAHELDGTLAPGDIAVLVRLRAQIP--PLKAALEQAGIPCSAPVEE 894

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
                                  A       G    +D    +  +   + T  +N     
Sbjct: 895  AF--------WQDAACARLLALAAVYCGFSGLAQVFDAATPQQSLQKDLDTATDNP---- 942

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
            + +             +         L+T +  +           W +            
Sbjct: 943  FAAAGPLPPPGDLESWLAGQNWAGEVLLTGRAWRELKRSWKEQESWQEFLHHLAW----- 997

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                      E        +    +     ++  A+    +   L+           + T
Sbjct: 998  ------LQETEMVRNKAEHVQIMTMHASKGLEFQAVFLPGLEDGLLPLRRDMLFGPATDT 1051

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
            +                     +       T  +   +    +    +  E+   +    
Sbjct: 1052 IT---------GAARNTGNSNADTADAIAPTVADTARTDAGPAANEYEAPEQEDEERRLL 1102

Query: 688  FEMANGTRHLIYT-----RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
            +         ++      R+L   ++    S +L+++            ++     L   
Sbjct: 1103 YVALTRAARALFVSHSARRTLYGKSLALPPSPFLEQIRHCCRQSVLTPHRQTLVRSLSLL 1162


>gi|239929058|ref|ZP_04686011.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 666

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 75/262 (28%), Gaps = 38/262 (14%)

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
           R      T       +  +    W R LD    +  + R            + + SE+ +
Sbjct: 408 RPRSAEETGAPRLTPEEARTVASWDRDLDALAGELLHTRASVTEVPLPA--SLTASELMR 465

Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
           L  DP    AR + +    P          RGT FH  +                   ++
Sbjct: 466 LAADPDGF-ARELARPMPRPPQ----PAARRGTRFHAWVE---------------ARFEE 505

Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
           +     E + LP     I      +        E    +      V  P +++I      
Sbjct: 506 LTLPMLEPDELPGSTAEIADERDLQALKD--AFERTEYAHRTPYRVEAPFQLSIAGR--V 561

Query: 898 LTGFADRIDLLKSG---FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954
           + G  D +     G     +I D+KTG     +        QL++   A        +  
Sbjct: 562 VRGRIDAVYKEGDGDGATYEIVDWKTGRARTADP------LQLAVYRLAWAEQ--QGVPP 613

Query: 955 RKVANL-FYIRLKQKFKIDCIT 975
             V     Y+R  +  + D + 
Sbjct: 614 ESVGAAFLYVRTGEVERPDPLP 635


>gi|218291367|ref|ZP_03495321.1| UvrD-like DNA helicase, C terminal [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218238771|gb|EED05986.1| UvrD-like DNA helicase, C terminal [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 609

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 60/615 (9%), Positives = 146/615 (23%), Gaps = 85/615 (13%)

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
           A+    D +A+A  +K P       +   +R          RG          +     R
Sbjct: 1   ALDNPLDSLALAAALKSPFVGVSDEDLAAARIVR------PRGPLWHAVREAARETEGAR 54

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            A +     +  W+           +  +   ++    L               +    +
Sbjct: 55  GALRSAVERLERWRGLARTRSPGDLLREIAREVEIDLYLRAMPRGSARAANLEQLIRLAQ 114

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI------- 608
           L      ++             + +           +   +   +  +E+  +       
Sbjct: 115 LHAPHAGDLYSFLAMVRGLEEADVDLGHAQGASGDSVAVMTIHGSKGLEFPHVYVLSLGR 174

Query: 609 -----------------------ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                                  +   +   T+       + L      E+R+L      
Sbjct: 175 QFPRNKSSIALHRRLGIGATMCDVETGVHWRTIPSIAVDHANLEASRAEEARVLYVALTR 234

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG---QAAHDFEMANGTRHLIYTRS 702
                  V       +   +     D    T   +      A+             + R+
Sbjct: 235 AKERLVLVGHAGKVASLADAAEGHDDEGRLTPVAFFNAKTYASWILSALMRHPDGAWLRA 294

Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
             E     ++     R  +    D     +K G                      +    
Sbjct: 295 QVEGARVALSDAPGVRFELEVEVDGRPQGQKSGVEPR--PSLSKAPLPPAEEVERELRQL 352

Query: 763 LEAQPRTYSFSEIKQLINDPY-------------AVYARRILKLD----------FIPHF 799
                  Y    I+     P               ++A R L+                 
Sbjct: 353 WAGPAWRYRAVRIESEERGPRVSLPSKLTATDIRRLFAERELRARGRHAGAVLDDPAFVR 412

Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
           +      +RG  FH  +     KR   +  ++    + +++     E +   +D      
Sbjct: 413 QSGASPRERGVAFHAFMQRAPIKRYA-SPDDVRRAAQALLEQGLLDERMAAALDP----- 466

Query: 860 FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI------GIHLTGFADRIDLLKSGFV 913
              +   F  H  +   + ++++   P    ++         + + G  D +     G  
Sbjct: 467 -DDVIAFFASHLGRRVLAADEVYREQPFFYRVDVRAGDAQAPVVVQGVIDCLIRDARG-Y 524

Query: 914 DITDYKTGDNPKKETAQ---KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970
            + DYKT             +  +PQ++  AAA++      +       L+++  ++   
Sbjct: 525 AVIDYKTDQARDASDLDRLVRAYEPQVATYAAAVR----EAVGTEPEVYLYFVHAREARS 580

Query: 971 IDCITNDKKKYSADE 985
                   +     +
Sbjct: 581 TRPSPLGTRLQQWAQ 595


>gi|283786520|ref|YP_003366385.1| exodeoxyribonuclease V beta subunit [Citrobacter rodentium ICC168]
 gi|282949974|emb|CBG89602.1| exodeoxyribonuclease V beta subunit [Citrobacter rodentium ICC168]
          Length = 1182

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 98/902 (10%), Positives = 226/902 (25%), Gaps = 136/902 (15%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGS 238
             A   ++        R  EL     +    A +R+E        ++      +I     +
Sbjct: 330  RALAEIRETVAREKRRRGELGFDDMLSRLDAALRSESGDALAAAIRTRFPVAMIDEFQDT 389

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
             P   R+   +        +L   D       +      +     S  +      Y+L  
Sbjct: 390  DPQQYRIFRRIWRQQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVSAR----YTLDT 445

Query: 299  LLDFL-DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                   +     +    + +    R +             +R     E +         
Sbjct: 446  NWRSAPGMVNSVNRLFTQMDDAFMFREIPFQPVKSAGKNQSLRFEFHGETQPAMTMWLME 505

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
              +    D +   A   A  +R  L+  ++  AL+    +       +++    +   +A
Sbjct: 506  GESCGVGDYQSYMAQVCAAQIRDWLEAGQRGEALLVRGDHSRAVSASDISVLVRSRQEAA 565

Query: 418  --GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                 L+     S+  S  +++F+  +   +  +++  +          + A        
Sbjct: 566  LVRDALTLLAIPSVYLSNRDSVFETLEAQEMLWILQAVMTPERENTLRSALAT------- 618

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
               +    +  D+++L     A  +       ++    +      +  +         L+
Sbjct: 619  ---SVMGLNARDIETLNESESAWDRVVEEFVDYRQIWQKRGVMPMLRKLMSSQHIAENLL 675

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                 +      L IS+  +   + L++                    L    S+ I   
Sbjct: 676  ATPGGERRLTDILHISELLQEAASQLESEYA-----------------LVRWLSQHILEP 718

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                A+    ++                    + I+   +S+ L +  + L  +      
Sbjct: 719  DSNAASQQMRLE---------------SDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 763

Query: 656  KNTAKNPFLSRVMQSDL-------NLKTAEKYIGQAAHDFEMANGTRHLI------YTRS 702
                 +   S     DL        L  AE+        +     +            R 
Sbjct: 764  DQAFYHDRNSFEAVLDLSHAEESIALAEAERLAEDLRLLYVALTRSIWHCSLGVAPLVRR 823

Query: 703  LRENNIPT-IASRWLQRLLVLGGTDFFDNLKKR-----------GQCYLDWTRKLDYTTK 750
              +    T I    L RLL  G       L+                 +  T  L  + +
Sbjct: 824  RGDKKGDTDIHQSALGRLLQKGEAKDAAGLRAAIGAICDENIHCRMPDVASTASLPSSDE 883

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-- 808
                   +            +     Q      A      L +D     +      +R  
Sbjct: 884  VSASLNARRVRRAPGDSWRVTSYSGLQQRGHGIAQDLMPRLDIDATGVGEATVLAPERTP 943

Query: 809  ---------GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
                     GT  H++  +L     +   P     +++ ++    +E   P +      +
Sbjct: 944  HQFPRGASPGTFLHSLFEDL-----DFTQPVDAAWVREKLELGGYEEEWEPTLTAWIEAI 998

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVN---------IPAKM---------------AIESIG 895
                 +       ++ +  +++ +          I  ++                +E   
Sbjct: 999  LRAPLNETGVTLSQLSAREKQVEMEFYLPIAQPLIAGELDALIRQYDPLSAGCPPLEFAQ 1058

Query: 896  IH--LTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAA 942
            +   L GF D +   + G   + DYK+            +           D Q  L   
Sbjct: 1059 VRGMLKGFIDLVFRHQ-GRYYLLDYKSNWLGENSQAYTPEAMASAMQAHRYDLQYQLYTL 1117

Query: 943  ALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
            AL      +I      R    + Y+ L+   +              EL  +  +    I 
Sbjct: 1118 ALHRYLRHRIADYDYERHFGGVIYLFLRGVDRAQPEQGIYTTRPHRELIARMDEMFAGIA 1177

Query: 999  TL 1000
              
Sbjct: 1178 QE 1179


>gi|189218557|ref|YP_001939198.1| RecB family nuclease and DNA segregation ATPase FtsK
           [Methylacidiphilum infernorum V4]
 gi|189185415|gb|ACD82600.1| RecB family nuclease and DNA segregation ATPase FtsK
           [Methylacidiphilum infernorum V4]
          Length = 1220

 Score = 62.2 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 68/216 (31%), Gaps = 32/216 (14%)

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN-LPPHIDII 855
               +     D G LFH ++ +  +K       E   L  +II  H EK   L P     
Sbjct: 661 QERGEKRSNMDLGELFHQLVKDFSEKLKENPQAEARVLFNRIIQGHKEKIRFLSPGQKDF 720

Query: 856 WRHLFHKISHSFLEH--EEKIQSSIEKIF----VNIPAKMAIES----IGIHLTGFADRI 905
                 K   SFL     EK +S          V    +           I + G  DR+
Sbjct: 721 ----LRKALDSFLVESVLEKKRSGWTLEGLFWQVEQGFEAFYPGDQASQRIKIKGSVDRL 776

Query: 906 DLLKSGFVDITDYK-----TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
              + G +++ DYK     TG    +         QLSL +  L   S        +A L
Sbjct: 777 SKDRLGRIELVDYKILQGETG-PHTER-----YLLQLSLYSWLLDRHSLKP----DLARL 826

Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            Y     +  +      K+    D   +  L  LI 
Sbjct: 827 EYFSPGYRSDLFSKEKLKEI--FDSKIKPFLDRLIS 860


>gi|251789629|ref|YP_003004350.1| exodeoxyribonuclease V subunit beta [Dickeya zeae Ech1591]
 gi|247538250|gb|ACT06871.1| exodeoxyribonuclease V, beta subunit [Dickeya zeae Ech1591]
          Length = 1224

 Score = 62.2 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 84/880 (9%), Positives = 202/880 (22%), Gaps = 76/880 (8%)

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMS 247
             ++  E   ++     +    A +R +    +            I     + P   R+  
Sbjct: 352  FRHEQESRAQMGFQDLLTRLDAALRGDNGERLAQRIRRQFPLAMIDEFQDTDPLQYRIFD 411

Query: 248  TVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL- 303
            T+    +      ++   D       +      +      +T    +   +  +    + 
Sbjct: 412  TLYQVADNDPQQGLILIGDPKQAIYAFRGADIYTYLRARRDTDGRHYTLGTNFRSTQAMV 471

Query: 304  --------DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
                      +         +  +  G + V           ++   +            
Sbjct: 472  DAVNQVFMQAENRADGAGAFLFRQPDGDNPVPFLPVQANGRDEVWMQEGSTAAALTCWTL 531

Query: 356  FSDVALIEADNEREEAISIAIALRMSLD-------------------ENKKKSALITADR 396
             +D  +  A+  +  A   A  +   L                         + L+   R
Sbjct: 532  ETDEPVSSAEYRQRMAAGCAREMVRLLQLGVQGLAGFAAPGQALRPVRPGDMAVLVNTGR 591

Query: 397  NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA- 455
                       R   ++ +S    +  +  +  L   L A     +   +   +  PL  
Sbjct: 592  EAMAVRAQLSARGVRSVYLSDRESVFDSPQAGELRCWLAACADPENDRLLRAALATPLLG 651

Query: 456  --KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                          +    ++   G +N +    +  ++   +        +    +  +
Sbjct: 652  LSWQALDCLNHDEREWERRVMQFVGYQNCWRQQGVLPMLRRLLWAFDVPRRLLAADNARA 711

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
              D      L+      +             C   +    T           +       
Sbjct: 712  LTDVLHLSELLQQASVHLDGEHALIRYLAEQCQAENPGGDTLKLRLESDADRVKVVTVHK 771

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL-FILG 632
            +   E     L    +    +   I     +        +       +      L   L 
Sbjct: 772  SKGLEYPLVFLPFACAFRAVSPRDIPLKFHDDDGQPRLELTASDAAVQRADHERLGEDLR 831

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
                 L      +  G+      + +A    L           T +  +   AH   +  
Sbjct: 832  KFYVALTRARYALWLGIAPLKELEKSAPGYLLGVGEPLAPGQLTQQLSVWCGAHSQRVPL 891

Query: 693  GTRHLIYTRS--LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
                    R+     +         ++R      +         GQ         +   +
Sbjct: 892  PETDEARYRAVQASPSLGQEPPLPDIRRHRWRITSYSGLQRAPEGQFQAQRESSENEAAE 951

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK--LDFIPHFKKDPDRTDR 808
                ++     P +   R         +   P        L   L++           DR
Sbjct: 952  VQSARQETFSEPQDVAERLPPLPTGYDMYGFPRGAVPGSFLHGLLEWAGETGFAALAADR 1011

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSF 867
              +   +     ++      P +   +  ++               +     +      +
Sbjct: 1012 DRVEDQVARRCNRQGWTPWIPMLTDWLMALLRQPLTLPGSSGGAVSLAGLTQYQVEMEFW 1071

Query: 868  LEHEE------KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT- 920
                +        Q     +     A +  E +   L GF D +   + G   + DYK+ 
Sbjct: 1072 FALNQVDTQALDNQVRAATLAGEPRATLMREQLNGMLKGFIDLVFEHQ-GRYYVLDYKSN 1130

Query: 921  ----------GDNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLK 966
                      G        +   D QL+L   AL     S++      R V    Y+ L+
Sbjct: 1131 WLGANAADYDGLRMAHAMLEHRYDLQLALYLFALHRLLKSRLPDYDYDRHVGGALYLFLR 1190

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                                +E+  ++LIE +  L +G+ 
Sbjct: 1191 GSQASGGGV----------YAERPDRSLIEALDRLFSGDT 1220


>gi|196228890|ref|ZP_03127756.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
 gi|196227171|gb|EDY21675.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
          Length = 1048

 Score = 62.2 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 80/809 (9%), Positives = 194/809 (23%), Gaps = 103/809 (12%)

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTG 237
             A       S+ + E  +     +                A   ++  +  +I+  +  
Sbjct: 249 CAALHVAAEISQAYREFRLGRGVMTFSDQIALAAELLRHPEAAQRIRAKQYRVILDEAQD 308

Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
           + P    ++  VA         P  + H P      +                H +    
Sbjct: 309 TDPTQFDVLLEVARPVEATGPWPSEETHPPLPGHFCMVGDFQQSIYGARADLAHYRRVHQ 368

Query: 298 KLLDF-------LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
             L           +     +     +N ++   +   +  +P      R T      + 
Sbjct: 369 AFLRTGAGEEVIFSVTFRLDRAGIEFANAVFPIVLHGLERQVPYVALYPRPTAFPGQIVR 428

Query: 351 NIQKCFSDVALIEADNERE--EAISIAIALRMSLDEN-----KKKSALITADRNLARRVK 403
              K   ++    A   +E  EA ++A  LR    E       ++ AL+         ++
Sbjct: 429 FDPKAGPEIIAERALKNKEYWEANNLAHWLREVGLEKLRASSWREVALLCPRTRWLPPLR 488

Query: 404 LELTRFGINIDISAGIPL-STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
             L   G+   + +   +   +   +  T+L   + +  +   I  +++       F   
Sbjct: 489 AALRSVGLKAQVQSERSINGDSPAYAWFTALATVLAEPRNGFEIVGVLRE-----IFGLS 543

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               A  +                   +  ++ +   +         S + E        
Sbjct: 544 DHDLAAFSEGYGVRFHLTAPTGRGGPVAEKINLLVALREQARSLPLFSAMEE-------- 595

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
                +  +T L     +  +        +  +L              +      + E  
Sbjct: 596 -----MVRVTQLRDRLLSLPADEYEGLGFELEELLTKAATAEAAKGTLENFAAELQSEFH 650

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
              ++                                 +      + I+   +S+   ++
Sbjct: 651 AARNV---------------------------------RGALPDAIQIISGHKSKGSEWE 677

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDL--------------NLKTAEKYIGQAAHDF 688
            +I+     G   ++      L     +                     ++        +
Sbjct: 678 AVIIPFFARGAKTQSPVYPRLLRDPRSAATIAAMESSDVDGDLKTAVALQEQQELERLLY 737

Query: 689 EMANGTRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
                 +H +     R+L              RL    G +     ++        T   
Sbjct: 738 VALTRAKHTLVLVDDRALFTGKKGLPERSQASRLRCGQGEENAAAFERLPTKLSACTETA 797

Query: 746 DY-TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ---LINDPYAVYARRILKLDFIPHFKK 801
           ++   K     +    P      +    S  +    L  +P A+    + + D   +   
Sbjct: 798 EHHAQKAIVRSQEMILPLPTLPAKALKASRERAAVFLKRNPSALAEAALAEADPAAYVAA 857

Query: 802 DP---DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
                   + G  +       ++     +         +  ++H    +  P        
Sbjct: 858 ARQASSAPNAGQRYGTWWHNFVEVL---DWSAPVASWDRTFETHLA-GSPDPDRSHHDWA 913

Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD-RIDLLKSGFVDITD 917
           L      S  +    +          +P   A+      L G  D  +   ++    I D
Sbjct: 914 LLRTQLTSDSDLTRLLAGPGTLAHAEMPFLWAMSEREC-LDGIIDLAVYDRQAHRWTILD 972

Query: 918 YKTGDNPKKETAQKLIDPQLSLEAAALKA 946
           +KT   P     +    PQLS    A   
Sbjct: 973 WKTNRVPPS---RSHYLPQLSAYWKAASE 998


>gi|114766742|ref|ZP_01445680.1| ATP-dependent DNA helicase [Pelagibaca bermudensis HTCC2601]
 gi|114541061|gb|EAU44117.1| ATP-dependent DNA helicase [Roseovarius sp. HTCC2601]
          Length = 680

 Score = 62.2 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 64/534 (11%), Positives = 142/534 (26%), Gaps = 54/534 (10%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL     +  +N      + +   ++RA  EL      IT +         +   +    
Sbjct: 44  TLAHRVAHLLVNGADPQRILLMTFSRRAATELTRRVARITEQAMG---RGVAAEALTWAG 100

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
               +            ++       L   +     +   DL      +L  S   A + 
Sbjct: 101 TFHGIGARI--------LREHALAIGLHPEFSIHDREDSADLMNLCRNALGFSQVKARFP 152

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
           AK        I +      D        +  W       LK     +       N     
Sbjct: 153 AK---GTCLAIYSRAVNSGDPLDEVLRDHFPWCSPWQAELKQLFGAYVSAKQAQNVLDYD 209

Query: 209 GYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
              +A  +  ++             ++I     +    AR++  +   P+G  +    D 
Sbjct: 210 DLLLAWAQVMSDEGFAAHIGGAWDHLLIDEYQDTNRLQARILMALK--PDGRGLTVVGDD 267

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +   T ++     +               +  LD      + +   +N + G++
Sbjct: 268 AQSIYAFRAATVRNILDFPTGFQPP--------ADVITLDRNYRSTQPILEAANAVIGQA 319

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD- 383
                             +     +   +       L+    E ++A      +    + 
Sbjct: 320 R-----------------ERYTKDLWTERASTEKPRLVTVATEGDQARYFVDRILEDRET 362

Query: 384 -ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               K+ A++    + + +++ ELTR  +      G+    + H   L + L  +    D
Sbjct: 363 GTKLKEQAVLFRTSSHSVQLEAELTRRNVPYVKFGGLKFLDSAHVKDLLAFLRLVRNPRD 422

Query: 443 FMAIATLVK-----HP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            +A   +++      P  A        L+    A         +   D       +  + 
Sbjct: 423 RVAGFRVLQLIPGIGPKAAGQVLDALDLAPDPLAALEDVAAPPRAGADWPGFVEAMRSKA 482

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                  H   W     E   E A      ++Q +  + T   N  +    L++
Sbjct: 483 DWPAALGHARAWYEPHLERMHEDAEARRADLMQ-LEQIATGYPNAEAFLTELTL 535



 Score = 38.7 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 31/310 (10%), Positives = 70/310 (22%), Gaps = 22/310 (7%)

Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDR--IATQKNNTHVPHWQSRLSEEDKELAVL 522
           +            G     D   +K L+     +   ++          +     + A  
Sbjct: 384 AELTRRNVPYVKFGGLKFLDSAHVKDLLAFLRLVRNPRDRVAGFRVLQLIPGIGPKAAGQ 443

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
           ++D +     PL   +          + +DW                      W+E   +
Sbjct: 444 VLDALDLAPDPLAALEDVAAP---PRAGADWPGFVEAMRSKADWPAALGHARAWYEPHLE 500

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
            +             ++  A  + +     +   T+ P    S    +    E  L+   
Sbjct: 501 RMHEDAEARRADLMQLEQIATGYPNA-EAFLTELTLDPPDATSDKSGVPLKDEDYLILST 559

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
                G          A +  +       L   +  +   +    +      +  +    
Sbjct: 560 IHSAKGQEWKSVYLLNAVDGCIPSD----LGTGSTHELEEERRLLYVAMTRAKDHL---- 611

Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKR--GQCYLDWTRKLDYTTKQ-PHYKRPKP 759
                   +  R+        G      ++ R   +  LD    L +         RP P
Sbjct: 612 -----TLGVPLRFYVTSQTRNGDRHVYAMRTRFIEKAMLDRFETLHWAPPVGQGAPRPAP 666

Query: 760 FPPLEAQPRT 769
                A    
Sbjct: 667 GQIDVAAKMR 676


>gi|260887200|ref|ZP_05898463.1| ATP-dependent nuclease subunit A [Selenomonas sputigena ATCC 35185]
 gi|330839034|ref|YP_004413614.1| recombination helicase AddA [Selenomonas sputigena ATCC 35185]
 gi|260863262|gb|EEX77762.1| ATP-dependent nuclease subunit A [Selenomonas sputigena ATCC 35185]
 gi|329746798|gb|AEC00155.1| recombination helicase AddA [Selenomonas sputigena ATCC 35185]
          Length = 1251

 Score = 62.2 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 86/925 (9%), Positives = 223/925 (24%), Gaps = 156/925 (16%)

Query: 160  ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
             TEE+  +DL AL             D +K  +  +     E         +   +    
Sbjct: 323  ATEEELLDDLRAL-----SGMAHAIVDVVKDFTASFQAAKKERGVVDFNDLEHFALAVLC 377

Query: 220  E--------------HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
            +                ++     +++     +      ++S VA   N   +    D  
Sbjct: 378  DKDASEGELRPSAQALALREKYEEVMVDEYQDTNGVQEAILSLVARDDN---LFAVGDVK 434

Query: 266  IPTAIWNTITEKSTNITSSNTT----------------YSTHPQYSLAKLLDFLDIKRED 309
                 +     +                                 ++  +   L      
Sbjct: 435  QSIYRFRLADPQLFLKKQREYPTLGEKYARIDLSENYRSRAGVLAAVNWIFSQLMTPEAM 494

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                 + +   +                ++   +         ++   + A   A  +  
Sbjct: 495  ELTYDDAAALHFAALYPEDSPKSLAGAVELHIIESDAESSVEPEEEDEEKAETSAVADGG 554

Query: 370  -----------------EAISIAIALRMSLD--------------ENKKKSALITADRNL 398
                             EA  IA  +R  ++                +    L+ A R  
Sbjct: 555  AETPEGEEEEELKGFALEAAFIARRVRELMESGALVADKDGYRPLRWRDIVILLRAVRTK 614

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            A  +   L    I    +            ++ ++L  I      + +A  +  P+    
Sbjct: 615  ADILLETLRDADIPAYATLDAGYFQATEVRVVLAVLAVIDNARQDVPLAAALCSPIVGLS 674

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
              E    R     E +       +       + + +++           W+  +      
Sbjct: 675  VSELAELRLAALEEDIFGALLVVNDPAAKFSASLREKVDAFLRLL--KGWRDLVRRVSVP 732

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
              +  +         +               ++D  +              R +  +   
Sbjct: 733  ELIWQIYRDTGYYDYVGGMAGGLLRQANLRMLADRARDYEETNFRGLFRFLRFIEKMQQM 792

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            E   + +    +  +    +  +  + ++    ++ G   K  ++ +S   ++       
Sbjct: 793  ETDLSAARTLGEGEDVVRIMTIHKSKGLEFPVVIVAGLGSKFNMQDASQDLLMHRELGLG 852

Query: 639  LNF----DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            L       +L           +   +      +    + +  A + +       ++A   
Sbjct: 853  LYRTEREKSLRYSTFAREAVAERIKRESKAEELRVLYVAMTRAREKLILVGSTKKLAACA 912

Query: 695  R--------------------------HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
                                        L  T +   +  P      L    V    +  
Sbjct: 913  EGWCSFVTQTERALPAHAALAANSFLDWLGMTVARHADGAPLREKAALLEKRVAPEGEDD 972

Query: 729  DNLKKRGQCYL-------------DWTRKLDYTTKQPHYKRPKPFPPLEAQPRT------ 769
               +                    +   KL         +       + A          
Sbjct: 973  SRWQVEIVPASAVASVSAAVAEDNELFEKLRRGEPLEASEEKDDVEQMLAWQYAPHGVDN 1032

Query: 770  ----YSFSEIKQLINDPYAVYARRILKLDFIP-------------HFKKDPDRTDRGTLF 812
                 S +E+K+  +   A   +  + L  +                K      + GTL 
Sbjct: 1033 VPAKLSVTELKRRFSVEDAAEEKAYIPLKEVHGSSKNVFKRPDFMQEKAGLSAAEYGTLM 1092

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H ++  +     +         +++ + +  EKE L P      + +      SFL+   
Sbjct: 1093 HAVLQHI-----DLAGDTGREGLEKQLANMVEKELLLP---EQAKAVRLDAVASFLQSPL 1144

Query: 873  K-IQSSIEKIFVNIPAKMAIESIGIH----------LTGFADRIDLLKSGFVDITDYKTG 921
                    +++  +P    +E+   +          + G  D +   ++G + + DYKT 
Sbjct: 1145 GTRMKKARRLWHELPFSRRLEAHSFYPEAEPEARIFVQGVIDVLFEDEAGALVLLDYKTD 1204

Query: 922  DNPKKETAQKLIDPQLSLEAAALKA 946
             N +    ++    Q+ +   A++A
Sbjct: 1205 KNTRPAAVREKYRLQIEIYTEAVEA 1229


>gi|258620942|ref|ZP_05715976.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM573]
 gi|258586330|gb|EEW11045.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM573]
          Length = 1208

 Score = 62.2 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 92/893 (10%), Positives = 207/893 (23%), Gaps = 117/893 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLGNPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN-----IQKCFSDVALIEADNEREE 370
             S     R   +     P  T         +    +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWTLEGQVQPALTYWWPEDLDKQQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSEQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   V   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLAESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDTESATTWVDLTGNEDALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F            +  +E  I  +    L++   L   D  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF----------LLQDGQEGGIEDLRQALLKQCENL--PDVA 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                           +LD +                    +    +     +DP      
Sbjct: 872  QCAPPERFEQAYQPPQLDESELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQDIPL 931

Query: 789  RILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINH 833
              +    +   ++                      GT  H++  E+  ++   + P    
Sbjct: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKI 991

Query: 834  LMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV 883
            +++ +     E E LP    ++                +I  +    E +    IE +  
Sbjct: 992  ILELMESEQIEAEWLPVLQHLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 884  ---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
                     + P       +G H     L GF D +   + G   + D+K+        A
Sbjct: 1052 PTLNRITQRHDPLSAHAGDLGFHSVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 930  QKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                           D Q  + A AL     S++           +FY+ L+ 
Sbjct: 1111 YHPQRLGSAMADHRYDLQYQIYALALHRFLRSRLANYDYELHFGGVFYLFLRG 1163


>gi|124022671|ref|YP_001016978.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9303]
 gi|123962957|gb|ABM77713.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
            MIT 9303]
          Length = 1274

 Score = 62.2 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 91/934 (9%), Positives = 225/934 (24%), Gaps = 124/934 (13%)

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            ++  ++       D  A +   + + W L+A   +   +        L+A  P      +
Sbjct: 343  LMPALQRSIADLCDGPAEQVWNHALHWGLSALAERRRQRGVMSYAELLSALDPKPQSETI 402

Query: 215  MRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
             +   +         +      +I     + P   RL+     H    ++L   D     
Sbjct: 403  AQPHPDQQAPWLEALRQRYRVALIDEFQDTDPVQWRLLEGAFAHSPDHLLLMVGDPKQAI 462

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD-----IKREDVKRLGNVSNEMYGR 323
              +      +     S          +       LD     +     +   +V +     
Sbjct: 463  YRFRGGDLNTYMHARSKVDRIDALLDNFRTTTPLLDGLNDLMAPGLRRSKLDVPSLTACS 522

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR-MSL 382
                    L  +   + N D   +   +I    +    +E       A ++   L+  S 
Sbjct: 523  QATPRSLPLGVNPLQLLNLDEATHPTGSIPSPLTSKTNLEEQIPTAVAHAVLDLLQSDSY 582

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
            + +     ++      A  ++  L   G+   + +   + T+  + +L   L+ + + + 
Sbjct: 583  NFSPSDICILVGRHRQAASIRQGLAVAGVPTRLVSQGDVLTSEAAQVLQRFLDCLARPSH 642

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
              ++  +    L ++   +   +     L+ +ALR    + ++  L  +       +   
Sbjct: 643  SSSLKLVACSALMQWNTEQLAHAECNGELDQLALRFRNWAINLPRLGLMGCLAELLEGRT 702

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                  + RL  +  + A L+ + I                     + +DW +      Q
Sbjct: 703  IADLSERGRLLGDLYQCAQLVQEVIH-------------RQGLDASTAADWLRR-----Q 744

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
             +   +          +  ++  ++ +     G         ++     L  G   +   
Sbjct: 745  RLQPVDPVPEVRQPHSDVAESAVAVVTVHRSKGMEYPVVICPYLWQAPSLPHGPLWRSGS 804

Query: 623  EKSSTLFILGTLESRLL------NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            E    + +                        L      +  +    +            
Sbjct: 805  ESHWCVALSTGWGKGWQLSQQSHQASLQEAERLAYVAITRACSLLMLIWARGAKQEGNPL 864

Query: 677  AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
            +    G  A D  M + T   +     R+    T+    L+ +               GQ
Sbjct: 865  SAWLFGVDAIDAAMQDLTPERMSAWLDRQQLPITVVPAQLKSMQQRWQPPPLQGELALGQ 924

Query: 737  C-------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE-IKQLINDP 782
                          Y  W                +     ++  +       ++      
Sbjct: 925  TPQRRLDLSWGRSSYSAWVSAAHTYDGSAPADPLELEEGRDSDQQKLEPMLKLQDQSAIA 984

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
             A  +   L         + P     G   H I+  L   +  ++   +      +I+  
Sbjct: 985  DASRSTPTLNWSDQSPLGQFPRGAVAGDCLHRILERLDFCKPLQDPNAVI-----VIEEE 1039

Query: 843  FEKENLPPHIDIIWRHLFHKISHS----FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
              +  L   +    +    ++  +     L      Q   ++    +   + I   G  L
Sbjct: 1040 LRRAGLDITLLASVQDGLDRVLSTPIGGSLGGLRLNQLHGQRRIHELSFDLPIAHQGKVL 1099

Query: 899  T------------------------------------GFADRIDLLKSG----FVDITDY 918
                                                 G  D +             + D+
Sbjct: 1100 RSFDLASVFHLNPLARFGLPYAEMIKGLNVCSRGFLTGSIDLVFTDAEDSLEARWWVADW 1159

Query: 919  KT---GDNPKKETA------------------QKLIDPQLSLEAAALKAGSFSQIDCRKV 957
            K+   G    +  A                        Q  L   AL      ++   + 
Sbjct: 1160 KSNWIGRRDSEGQAVACGPLHYDDSAMEQQMLLHHYPLQAHLYLVALHRFLRWRLPSYEP 1219

Query: 958  ----ANLFYIRLKQKFKIDCITNDKKKYSADELS 987
                    Y+ L+       +           L 
Sbjct: 1220 KLHLGGYVYVFLRGLPGAKAMNGRSLTKPVPGLI 1253


>gi|253999369|ref|YP_003051432.1| RecB [Methylovorus sp. SIP3-4]
 gi|253986048|gb|ACT50905.1| RecB [Methylovorus sp. SIP3-4]
          Length = 267

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 60/206 (29%), Gaps = 17/206 (8%)

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
           +  +P     S    L + P    A  +              +   GT  H        +
Sbjct: 1   MNREPIRIRASSFGSLFDCPARWIAIHLEGKRSPQS-----GKAALGTALHAGTAVFDSE 55

Query: 823 RINKNTP---EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
           R+    P     +    + +    ++    P   +    +   ++  + + E        
Sbjct: 56  RVAGQLPNVGAASDAAAEKVSKIDDETIWEPGEQVKAIDVATSLTAKYCKEESMKHQF-- 113

Query: 880 KIFVNIPA-KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK---LIDP 935
              V      + I+ +G+ LTG  DR++++  G   +TD K+G                 
Sbjct: 114 -AAVEATLDSLVIKDLGLELTGTTDRVEVIG-GEYGVTDIKSGKTAVGTNGIAKTHGHAA 171

Query: 936 QLSLEAAALKAG-SFSQIDCRKVANL 960
           QL +     +           ++  L
Sbjct: 172 QLGIYEIVAEESTGLQITGPAQIIGL 197


>gi|260881254|ref|ZP_05404011.2| ATP-dependent helicase PcrA [Mitsuokella multacida DSM 20544]
 gi|260848967|gb|EEX68974.1| ATP-dependent helicase PcrA [Mitsuokella multacida DSM 20544]
          Length = 745

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 91/756 (12%), Positives = 181/756 (23%), Gaps = 120/756 (15%)

Query: 16  PFFREMIPAL--LNGTLVENFRYDPLNPLLLA-SVTIYVPTKRAIQELRSEFIEITGKKS 72
            F R +  A       L   F Y      +L  ++     T +A  E+RS    +TG   
Sbjct: 49  GFVRVLAGAGSGKTRALTHRFAYLVEELGILPGNILCVTFTNKAATEMRSRIHALTGDND 108

Query: 73  TILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSNIQRLLELARLILIWRNKLPDIIKDL 130
           T    I +           D            + N      LA++       L D+    
Sbjct: 109 TG--YINTFHGFCVSILQEDSHAVGYPKSFLVLDNADIDDMLAKIYEERGLTLRDMTYGQ 166

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
             +                K L  +             L +LK +           F   
Sbjct: 167 ARDM--FEMRKLVQQPDYYKELIAL------------PLASLKEKYDRAQSKQDILFYGY 212

Query: 191 ASKYWTER-LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
             +      L   +      +  A   A  +   +     I+I           RLM+ +
Sbjct: 213 LYEEKKCFGLDYNDLIKFSLHIFAEHEAIRKKWQQ-RLEYIMIDEFQDIDEPQYRLMNVL 271

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                   V+   D       W   + +      ++   +        K +  L+  R  
Sbjct: 272 CGWHKNLFVV--GDPDQTIYTWRGASGRYLLDFDTHFPGT--------KTIFMLENYRST 321

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            + L  V++ +                   +NT  +E  +  +++    V    A    E
Sbjct: 322 PEILSVVNSLIT------------------KNTSRIEKDLVPVKEHGRKVVCHHAGAASE 363

Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
           EA  +A  +     E    ++  ++     + R ++ +L +  I   I +G+        
Sbjct: 364 EASWLAGEMARLHAEGVAYREMTVLYRAHYITRSIEEQLLKAEIPYTIYSGVQFFARREI 423

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
               S L  +    D +++  +V  P    G   +                         
Sbjct: 424 KDALSYLRLLAYR-DDLSLLRVVNVPKRNIGQRRRKFLTEYAEEH--------------- 467

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                                     E  +      +    Q    L         + G 
Sbjct: 468 ---------------------GLTFYEAMQASIEDPIWKGTQARAFLKLVDDLAEVSTGA 506

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
                  ++         L        L    E K     +       + +         
Sbjct: 507 SVSEVLAEVLDRSGYEAMLRTEGSQARLDNLAELKQSVREYEVSCGEEAGLTDYLAHAAL 566

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
              +           +    + ++    ++ L F  + L  LNEGV+P    +       
Sbjct: 567 FTNQ--------DAGDPGDKVRLMTVHTAKGLEFPYVFLVALNEGVFPSRKTR------- 611

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL--RENNIPTIASRWLQRLLVLG- 723
                   T E    +    F         L  + +     +      SR++  +     
Sbjct: 612 --------TPEAMEEERRLAFVAMTRAEKGLYLSDAEGLNIDGSMRYPSRFILDIDPALL 663

Query: 724 ---GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
                     ++          R+L    + P    
Sbjct: 664 DFTAPLPERLVRAARDFVRASARRLSRQAEPPALHE 699


>gi|254776587|ref|ZP_05218103.1| hypothetical protein MaviaA2_18231 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 309

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 57/242 (23%), Gaps = 23/242 (9%)

Query: 59  ELRSEFIEITG-KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL 117
            L +  +   G   +   P+++++              +    P      RL+  A    
Sbjct: 68  ALTTALLRSAGAGPAVREPLVRTVHGYAYAVLRRAAERAGEAPP------RLVTSAEQDA 121

Query: 118 IWRNKLPDIIKDL--YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
           I R  L   + D      +  +      +    A  L +++          + L  L   
Sbjct: 122 IIRELLAGDLADGPRAATAWPAALRPALSTAGFATELRNLLARCAERGVDPQALERLGRR 181

Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
                W+ A  F +   +              V    A +   A        G   + G+
Sbjct: 182 CRRPEWVAAGQFARQYEQ--------------VMLLRAAVGTAAPEATTPALGAAELVGA 227

Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
                A    +          +++       P A        +    +          + 
Sbjct: 228 ALEAFAVDAELLAAERGRIRVLLVDDAQQLDPQAARLVRVLAAGADLALIAGDPNQAVFG 287

Query: 296 LA 297
             
Sbjct: 288 FR 289


>gi|229521160|ref|ZP_04410580.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TM 11079-80]
 gi|229341692|gb|EEO06694.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TM 11079-80]
          Length = 1208

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 94/893 (10%), Positives = 211/893 (23%), Gaps = 117/893 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRSLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   AI  R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAAIFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   +   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAIASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLTESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDAESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F            +  +E  I  +    L++   L   D  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF----------LLQDGQEGGIADLQQALLKQCENL--PDVV 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                 +         +LD                      +    +     +DP      
Sbjct: 872  QCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPL 931

Query: 789  RILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINH 833
              +    +   ++                      GT  H++  E+  ++   + P    
Sbjct: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKI 991

Query: 834  LMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV 883
            +++ +     E E LP    ++                +I  +    E +    IE +  
Sbjct: 992  ILELMESEQIESEWLPVLQQLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 884  ---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKT---GDNPKK 926
                     + P       +G H     L GF D +   + G   + D+K+   GD+P  
Sbjct: 1052 PTLNRITQRHDPLSAHAGDLGFHSVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 927  --------ETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                           D Q  + A AL     S++      +    +FY+ L+ 
Sbjct: 1111 YHPQRLGSAMVDHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRG 1163


>gi|78356631|ref|YP_388080.1| ATP-dependent DNA helicase UvrD [Desulfovibrio desulfuricans subsp.
            desulfuricans str. G20]
 gi|78219036|gb|ABB38385.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio
            desulfuricans subsp. desulfuricans str. G20]
          Length = 1067

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 73/732 (9%), Positives = 165/732 (22%), Gaps = 107/732 (14%)

Query: 226  TKGPIIIAGSTGSIPATARLMSTVAN--HPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                +++     +     + +  +A      G  V    D       W        +   
Sbjct: 369  RLTHLLVDEFQDTSRDQWQAIMPLATECLAKGGSVTYVGDVKQAIYSWRGGDSDLFDGAL 428

Query: 284  SNTTYST-HPQYSLAKLLDFLDIK--------REDVKRLGNVSNEMYGRSMVISKSFLPP 334
                     P      L               R         S     R++    +    
Sbjct: 429  EEPELRAICPSPRQLLLPFNWRSSEIVVTTNNRLFEPLGSGQSALAAARAICDDDAPEEV 488

Query: 335  DTSDMRN-------TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----- 382
                          T     +          +  + AD+  +   S+   L   +     
Sbjct: 489  IQEAASRILRSFTGTAQQVPEHRQGSGGLVRLYDLYADSSEDLYESVKEELHRLITEELS 548

Query: 383  -DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                 +  A++      A RV   L  + I I     + L+     +   + L  +    
Sbjct: 549  GRRQWRDIAVLVRSNPEAGRVAEWLVEWDIPIITENSLRLADHPLITQTVAFLRFLDYPL 608

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
            D +A+  ++                                        L        + 
Sbjct: 609  DELALCEVLCG------------------------------------CELFGGAGGLARA 632

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
            +                L     D       P  T     ++      +           
Sbjct: 633  SLDGQLATRGDRPLITWLRETYPDIWKTWFAPFYTQAGLMSAYDTVQELF---------- 682

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                   +R +       +   +      +    +    +   +++   +    E V   
Sbjct: 683  -------NRFMVCRRHPADTVFIRRFLEIVHAADARGLRSLSTFLEYWQQHGTEEKVPM- 734

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK-NTAKNPFLSRVMQSDLNLKTAEKY 680
             +    + I+   +S+ L F  +I+   +  +       +     + +      +   ++
Sbjct: 735  PDNLDAVRIMTMHKSKGLEFPVVIIPFHHHTLQNDNTPVRTTVDGQDVMVAACAELGAQW 794

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTI-------ASRWLQRLLVLGGTD-FFDNLK 732
                A D        ++ +TR + E +            +  L  L V+ G D       
Sbjct: 795  YAARARDACEQLNLLYVAWTRPVDELHAFLGCTSRNENKAPMLSALRVMLGEDYPARGET 854

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
             +                       +P             +        P        + 
Sbjct: 855  VQWGETPHAQAAGSSPAGTTADAVQQPCAGSAPCSAPAEPAA-ALQNWMPMDWLPTLKIF 913

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
             + +       D   RG L H+ +  L      K T +    +++ +    EK   P   
Sbjct: 914  RNPLEDVV--FDERRRGELAHSCMESL------KLTGDTESDIRRAVSHALEKCPFPVPD 965

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL-KSG 911
                    H +              + +   +   + ++      L     R+DLL   G
Sbjct: 966  KESTAQELHGMLRW-----AASLPDMPRWLAHGQPEQSVMDADGALH----RVDLLVDDG 1016

Query: 912  FVD-ITDYKTGD 922
                + +YKTG 
Sbjct: 1017 HTRTVVEYKTGA 1028


>gi|301165618|emb|CBW25189.1| hypothetical protein BMS_0260 [Bacteriovorax marinus SJ]
          Length = 793

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 96/307 (31%), Gaps = 51/307 (16%)

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
             +L+        K+              S S+++  ++ P   Y   + + +       D
Sbjct: 492  EELNTLEDGELVKKDILEVDEVHFGERISASKVQTFLDCPRKFYYSYMDRKEIEVMNSSD 551

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE------NLPPHIDIIW 856
                + GTL H +I +  +K  + +      ++K+ +   F +       +L    + I 
Sbjct: 552  LKPNEIGTLEHEVIEKYFEKIKSWD----AQILKETVQEVFLEYTLKNRKSLNSVKEKIS 607

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
             +     S + +++   I   +      +  ++++ S G ++ G  D +   +     I 
Sbjct: 608  LYEISNYSENGIKYILHILDELP--GSEVAFEVSLSSEG-NVAGKIDCLIKYQD-MFAIL 663

Query: 917  DYKTGDNP--KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR---------- 964
            D+K        K   +K    QL                   V+ + +            
Sbjct: 664  DFKRSKASVANKSEIEKFSKIQLPFYL---------NHFGGDVSKVLFWGYVNLSDLDEC 714

Query: 965  --LKQKFKIDCI-------TNDKKKYSADELS---EKSLKNLIEIVTLLQNGEQPFISHL 1012
              LK   ++             K+K S D+      +      ++V  L+       S  
Sbjct: 715  LILKGGAELAEDFMSKVGFPLSKRKSSLDDTLGWFSEYRDFEEKLVAELREQS----SWP 770

Query: 1013 RLSEKSN 1019
             + +K +
Sbjct: 771  AIPQKDD 777


>gi|296158274|ref|ZP_06841106.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
 gi|295891610|gb|EFG71396.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
          Length = 708

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/455 (10%), Positives = 133/455 (29%), Gaps = 60/455 (13%)

Query: 10  TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE--- 66
           T  P +        +    TL        +N      + +   ++RA  E+         
Sbjct: 35  TAPPGALLVIAGAGSGKTNTLAHRVANLVVNGADPRRILLLTFSRRAALEMIRRVTRIAG 94

Query: 67  -ITGKKSTILPIIK---SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
              G ++ +   +    +   V       +      L P  +   R    A L+ + R++
Sbjct: 95  AALGTRAALAQGLTWSGTFHSVGARLLR-EYADLIGLAPAFTINDREDS-ADLMNLVRHE 152

Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
           L    K+    +  +     +  +    +L  ++D      ++WE               
Sbjct: 153 LGLSAKERRFPAKGTCFAIYSRVVNTGASLGQVLDKAFPWCREWEA-------------- 198

Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQI----ALMRAEAEHLMKGTKGPIIIAGSTGS 238
                L++    + E   + +        +              +      +++     +
Sbjct: 199 ----DLRMLFAAYVEAKQKQSVLDYDDLLLYWSHMAAEPAIAADLSARFDHVLVDEYQDT 254

Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
               A ++  +   P+G  +    D       +   T ++     ++       Q +L +
Sbjct: 255 NRLQASILLALK--PDGRGLTVVGDDAQSIYSFRGATVRNILDFPAHF-DPPAKQVTLER 311

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
                             +  +   + VI  +      +   +    +            
Sbjct: 312 NYRS-------------TAPILAASNAVIELASERYTKNLWTDKASAQRP---------- 348

Query: 359 VALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDIS 416
             L+   +E ++A  +   +  + ++    K  A++    + +  +++ELTR  I     
Sbjct: 349 -RLVSVADEADQARYVVEQVLEAREQGMKLKSQAVLFRASHHSAALEIELTRRNIPFVKF 407

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            G+    ++H   + ++L       D +A   +V+
Sbjct: 408 GGLKFLDSVHVKDVLAVLRWAENPRDRVAGFRVVQ 442


>gi|312194627|ref|YP_004014688.1| hypothetical protein FraEuI1c_0740 [Frankia sp. EuI1c]
 gi|311225963|gb|ADP78818.1| Protein of unknown function DUF2800 [Frankia sp. EuI1c]
          Length = 288

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 54/185 (29%), Gaps = 11/185 (5%)

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
            +  +  T + + +    + P       + +                GT  HN +     
Sbjct: 8   EMPRRLFTCTPTRLASFEDCPRRYRMTYVDRPAPPKGPPWAHT--SLGTSAHNALRLWWD 65

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
           +   + TPE    + +       +           R     +   +      +  + E  
Sbjct: 66  EPARRRTPERAAALVRSGW--VAEGWRDDQQSADARDRVAAMCERYTA---GLDPTDEPR 120

Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
            V        +   + L G  DR+D    G + + DYKTG    +        P L+L A
Sbjct: 121 AVERQVATRTDL--LALHGRVDRLDER-DGELVVVDYKTGRRAPQ-DGDARTSPALALYA 176

Query: 942 AALKA 946
            A + 
Sbjct: 177 FAAER 181


>gi|238796584|ref|ZP_04640091.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia mollaretii ATCC 43969]
 gi|238719562|gb|EEQ11371.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia mollaretii ATCC 43969]
          Length = 1200

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 107/953 (11%), Positives = 228/953 (23%), Gaps = 123/953 (12%)

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA---KNLADIIDIIETEEKKWEDLHAL 172
            +  W  +     +           +        A     L  +ID I  +     DL   
Sbjct: 267  VGAWAEQETGDYQLPKELEKFRQSVLFEKTKKGAAPQHALFSVIDRIFEQPLTLRDLI-- 324

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA----EAEHLMKGTKG 228
                       A   ++ + +    +  EL     +    A+++          ++    
Sbjct: 325  --------LARAISEIRTSVQQEKRQRAELGFDDLLSKLDAVLQQSGGELLAKSIRTRYP 376

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
              +I     + P   R+  T+        +L   D       +      +     S  + 
Sbjct: 377  VAMIDEFQDTDPQQYRIFHTLYGGQEECGLLLIGDPKQAIYAFRGADIFTYIRARSEVSA 436

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                 Y+L           + V RL ++ +  +    +   +    + +   + +I  +K
Sbjct: 437  H----YTLETNWRSSFPMVQSVNRLFSLVDVPFLFEQIPFIAVSAAEKNSHLSFEIKGDK 492

Query: 349  IPNIQKCFSDVALIEADN-EREEAISIAIALRMSLDE-----------------NKKKSA 390
             P I         I     ++  A   A  +R  L                         
Sbjct: 493  QPAISFWLQPGEGIGVSEYQQLMARQCAAQIRDWLTAGQNGLAQLVTVDGSRPVQASDIT 552

Query: 391  LITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            ++   R  A  V+  L+   I  + +S    +  T  +  L  LL A+       A+ + 
Sbjct: 553  ILVRSRAEAALVRDALSALAIPSVYLSNRDSVFDTAEAKDLLWLLQAVLAPEQERALRSA 612

Query: 450  VKHPLAKFGFPEKYLS----RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
            +   +               RA +AL     R  ++      L  L             +
Sbjct: 613  MATGVLGLDAKMLDALNHNERAWDALVEEFDRYRQHWQRRGVLPMLREIMACRHLAENLL 672

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCI--TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                      D      L+      +     +     +     N  + +      +    
Sbjct: 673  ATPGGERRLTDLLHLGELLQEAASQLDSEHALIRWLAQQIAQPNHQLDNQQLRLESDRHL 732

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
            V +    K   L +          F +  +     + +    +D+          + +  
Sbjct: 733  VQVITIHKSKGLEYPLVWLPFVGNFRQQQDVLYHDRHSFEALLDLNADEESQALAEEERL 792

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                  +   L         +    +      K   K    S V +S L     +   G 
Sbjct: 793  AEDLRLLYVALT------RAVYHCSVGIAPLIKGGRKKQGDSDVHRSALGYLLQQGQAGD 846

Query: 684  AAHD---FEMANGTR--HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
            A +          +    +  + + R ++ P      +   L     +       R   Y
Sbjct: 847  AQYLADKLAELTASSGGDISVSLAERPDDTPWQPQPEIVPALAARQFNRQVQDYWRVTSY 906

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                               +         ++ S    + L          + L  +    
Sbjct: 907  SGLQ---------------QHGSSKSGASQSLSVPLQELLPRLDTDAVGEQALATEISLT 951

Query: 799  FKKDPDRTDRGTLFHNIIT--ELIKKRINKNTPEINHLMKQIIDSHFEKENLP------- 849
                P     GT  H+++   +  +        E     +   D      +         
Sbjct: 952  PHTFPRGAAPGTFLHDLLESMDFSQPIDQSWLAEQLQR-QGFGDQWLPMLSQWINDILQV 1010

Query: 850  -----------------PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                                   +  +   +  S L+   K    + +          ++
Sbjct: 1011 PLNTTGVTLAGLSPQSKQAELQFYLPIDTLLRASELDSLIKHYDPLSR------QCPVLD 1064

Query: 893  SIGIH--LTGFADRIDLLKSGFVDITDYKT---GDNPKK--------ETAQKLIDPQLSL 939
               +   L GF D +   + G   + DYK+   G               A+   D Q  L
Sbjct: 1065 FQQVRGMLKGFIDLVFCWE-GKYYLLDYKSNWLGAESSAYTLEAMTHAMAEHRYDLQYQL 1123

Query: 940  EAAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
               AL      ++      R    + Y+ L+   K               L E
Sbjct: 1124 YTLALHRYLRHRLPNYDYQRDFGGVIYLFLRGVDKQYPGNGIFSCRPEQGLVE 1176


>gi|169797388|ref|YP_001715181.1| exonuclease V, beta chain [Acinetobacter baumannii AYE]
 gi|213155797|ref|YP_002317842.1| exonuclease V beta chain [Acinetobacter baumannii AB0057]
 gi|215484828|ref|YP_002327063.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
            polypeptide) [Acinetobacter baumannii AB307-0294]
 gi|301345350|ref|ZP_07226091.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
            polypeptide) [Acinetobacter baumannii AB056]
 gi|301512605|ref|ZP_07237842.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
            polypeptide) [Acinetobacter baumannii AB058]
 gi|301594570|ref|ZP_07239578.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
            polypeptide) [Acinetobacter baumannii AB059]
 gi|332851854|ref|ZP_08433757.1| putative exodeoxyribonuclease V, beta subunit [Acinetobacter
            baumannii 6013150]
 gi|332867447|ref|ZP_08437607.1| putative exodeoxyribonuclease V, beta subunit [Acinetobacter
            baumannii 6013113]
 gi|169150315|emb|CAM88212.1| exonuclease V, beta chain [Acinetobacter baumannii AYE]
 gi|213054957|gb|ACJ39859.1| exonuclease V beta chain [Acinetobacter baumannii AB0057]
 gi|213986544|gb|ACJ56843.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
            polypeptide) [Acinetobacter baumannii AB307-0294]
 gi|332729639|gb|EGJ60975.1| putative exodeoxyribonuclease V, beta subunit [Acinetobacter
            baumannii 6013150]
 gi|332733987|gb|EGJ65131.1| putative exodeoxyribonuclease V, beta subunit [Acinetobacter
            baumannii 6013113]
          Length = 1232

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 93/904 (10%), Positives = 222/904 (24%), Gaps = 197/904 (21%)

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHL-------MKGTKGPIIIAGSTGSIPAT 242
               K   + L     ++       L  A            ++     I++     +    
Sbjct: 365  EVKKRLPQVLQNKGETTFSQQIRTLSEALKGEQGQRFAVFVQARYPLILVDEFQDTNQDQ 424

Query: 243  ARLMSTVANHPNGA---IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
              +++++  HP       ++   D       +    +  T + +     + H      KL
Sbjct: 425  DDMLASIWRHPERYQKGCMIMVGDRKQAIYGFRG-GDMLTFLNAYKDIQAKH--GREYKL 481

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            +       +    L  V + ++ R +   +               +             +
Sbjct: 482  IHNHRSVAD----LVEVVDALFQRQIDFGEQVQYDPIRAGTRPHPVLIDQNQPNPHP--L 535

Query: 360  ALIEADNEREEAISIAIALRMSLDENK-----------------KKSALITADRNLARRV 402
              +   ++  EA  +A  +R  L+++                     A+++ + +   +V
Sbjct: 536  RWLTLKDKETEAQQVAWKIRDLLNQSHAGQLYFQKDAQTQTLNEDDIAVLSRNHDGLDKV 595

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
            + EL R GI ++  +   +     +  + +LL AI    D                    
Sbjct: 596  QFELERLGIRVNRPSKRSVFDCTIAQDVGALLTAILHPYD-------------------- 635

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                     E    R   +    MDLK L+                              
Sbjct: 636  ---------EAKVKRALISRLFAMDLKQLLQ----------------------------- 657

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLS-ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             ++   + ++  +T              +  W +          L   +   N       
Sbjct: 658  -LEQTAEGLSQFMTGFDAIRELWSAQGFLVAWQQCLNQFGIWKNLVAVQSKDNERVVVNL 716

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLI-DGETVKPKIEKSSTLFILGTLESRLLN 640
            + L+ + S+  E     +     ++  +   +     ++ ++   + + ++   +S+ L 
Sbjct: 717  RHLTEILSQHSEKYQGAQNLYHWYLKQLQSPLDREWELERRLSSEAGVQLMTIHQSKGLE 776

Query: 641  FDTLILGGLNEGVWPKNTAKNP----------------------FLSRVMQSDLNLKTAE 678
            F  + L G ++     N   N                         + + +++L      
Sbjct: 777  FKIVFLLGADKPFRENNKTLNFSTQDITVSESAQTLTQRVVAIADKTYLNETELKQHEER 836

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                Q    +       H +   +L ++      S                   +     
Sbjct: 837  ALAEQNRLWYVALTRASHRV--YALLQDTDGKSVSGLAFWKNRAEPFQHRCCTDEIILEQ 894

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA------RRILK 792
                R L+        +               SFS + Q +                +L 
Sbjct: 895  PPAARHLNQHINIIEIQAQHFPDQRFYSRGKTSFSYLAQHLRHKVGTDLLASQSHEAVLA 954

Query: 793  LDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINHLMKQ 837
             D +           +               G   H I   +  +  ++   EI    K 
Sbjct: 955  EDELDQVISVEAPAAQPINWIKSNFPRGTLAGNFLHEIFEHIDFQCSDEWVSEIRRRFKN 1014

Query: 838  IIDSHFEKENL-----PPHIDIIWRHLFHKISHSFLE------HEEKIQSSIEKIF--VN 884
               S ++   +      P        L+H ++    E      ++    + ++       
Sbjct: 1015 DYSSLWQDLLIKYQESFPEEQEAEYSLYHAVAEWLQEILSTPLYQGFRLNQLQPEHYLSE 1074

Query: 885  IPAKMAIESIGIH--------------------------LTGFADRIDLLKSGFVDITDY 918
             P  +A+    +                           L G  D +         I DY
Sbjct: 1075 CPFYLALSDRVLAMKRIQQLFAEYGMEMPELLEARSARYLNGSIDLVYFDG-QRYHIADY 1133

Query: 919  KTG---------DNPKKETAQKLID--PQLSLEAAALKAGSFSQID----CRKVANLFYI 963
            K+                 +  L     Q  L   AL      ++      + +    Y+
Sbjct: 1134 KSNYLGENLADYSVESIAQSMSLASYWLQAGLYLVALHRYLKVKMQNYDIEQHLGGATYL 1193

Query: 964  RLKQ 967
             L+ 
Sbjct: 1194 YLRG 1197


>gi|220904252|ref|YP_002479564.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
            str. ATCC 27774]
 gi|219868551|gb|ACL48886.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
            str. ATCC 27774]
          Length = 1173

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 78/743 (10%), Positives = 170/743 (22%), Gaps = 74/743 (9%)

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVAN--HPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
                  ++     +     R +  +       G  +    D       W     +  +  
Sbjct: 396  ARLTHYLVDEFQDTSQEQWRALRPLVEEALSRGGSLTWVGDVKQSIYGWRDGDPELFDGI 455

Query: 283  SSNTTYS----------------------THPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              +   +                       H     + L      +      L     E 
Sbjct: 456  LEDKGLAAVAATTARDSLPFNWRSRRQVVEHNNALFSLLEQADTARAVMSALLPGDMPED 515

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
                ++ +              +  E+           V  I AD+      ++   L  
Sbjct: 516  LSAEIMDASVKSLLGAFAGTRQECPEHTP---DGGLVQVEDIAADSSEMLREAVFDRLGR 572

Query: 381  ------SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                  +         ++    + A R+   L R GI +     + LS         +LL
Sbjct: 573  ILLDDVAPQRPWSDVLVLVRSNDGAARIADHLVRLGIPVITENSLLLSAHPLIVQTVALL 632

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN--------KNSYDIM 486
              +   +D +A+ T++   +         L+           +          +  +   
Sbjct: 633  AFLDSPDDNIALLTVLTGEIFHGHPEAAELAHTDLHGWCARQKKGFLYQSFRQRWPHVWQ 692

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDK--ELAVLLVDHILQCITPLVTYKTNKNST 544
             L +    +         V  W +RL  E +  E A  L   +    +         ++ 
Sbjct: 693  SLLAPFFSQSGLMTPYDTVLEWYARLQVEQRFPEAATFLRRFMEVLHSAEEKGLATLSTF 752

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
              + +     +          +       +   E     +      I  +   ++ N   
Sbjct: 753  LEHWNAKSQEEKVPMPENMNAVRVMTVHKSKGLEAPVVFVPFTALNISASDKPLRTNRQG 812

Query: 605  WIDIIT-RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
               ++  +   G      + + +   +     +     D L +   +        A    
Sbjct: 813  LSMMVRNQKALGRPYYEDLARQARESLNLLYVAFTRARDALYIFRTSAKRQSPVLAGLDI 872

Query: 664  LSRVMQSDLNLKTAEKYIGQ-AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
            L         L+          A D    +     I      +  +P   +         
Sbjct: 873  L----WERAGLQPPYALGSLPTAADTSRGSHAHAAIGADVDTDCALPASPAGGRPANPAP 928

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
              T    ++                    P   R       +        +        P
Sbjct: 929  APTPGLQHVDGTAGAPGIL------PAAAPAISRTPSVGADQEYDAFSPDTADAAEDWRP 982

Query: 783  YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                    LK+   P    D    DRG L H  +  L      + T       +  ++  
Sbjct: 983  MQW--LPRLKIFRNPMAAFDFQPEDRGNLLHFCLEHL------RLTGSPREDAQAALNFG 1034

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAKMAIESIGIHLTG 900
                 LP   D   RH   +  H F    +  +  ++           +      +    
Sbjct: 1035 LRHYPLPVPDDAALRHGAFEALHWFASQPQSARWLANGWP-----EHSIMTAQGQLL--- 1086

Query: 901  FADRIDLLKSGFVDITDYKTGDN 923
              D +     G + + DYK+G  
Sbjct: 1087 RMDLLVHEPWGRL-VIDYKSGQP 1108


>gi|317486027|ref|ZP_07944881.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
 gi|316922705|gb|EFV43937.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
          Length = 741

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 57/610 (9%), Positives = 157/610 (25%), Gaps = 78/610 (12%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    +     +  + + +   T++A +E+     ++ G        I  +      
Sbjct: 34  RTIVHRLAWLAEQGVPASDMLLLTFTRKASREMLLRATDLLGY------SIGGVHGGTFH 87

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
            F   +L  Y        +                  D    +              +  
Sbjct: 88  SFAFSVLRQYRPAWAEGPVT------------VMDSADSASAIQQCKERLKVGKGDRSFP 135

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
             + +  ++     +E    D+     +         AD L+   + +     +      
Sbjct: 136 KTQTIIGLLSKARNKEISIGDVLQRDAQHLLPH----ADALESIGEAYRGYRRQHGLLDY 191

Query: 208 VGYQI----------ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
                             R       +     I++     +    ARL+  +A       
Sbjct: 192 DDLLFELEDLLKGDPEAGREGLAERFRERYRYIMVDEYQDTNRVQARLVRLLAGEAGN-- 249

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
           V+   D       +     ++          +             + ++         + 
Sbjct: 250 VMAVGDDAQSIYAFRGADVRNILDFPKLFPGT-----------RVIRLEENYRSTQPVLD 298

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
                 +           T+                     V L+   ++  +A  +A  
Sbjct: 299 VANAVLAPASEGFRKNLFTTKENTP------------KTPRVRLVRPMSDLTQANVVAAR 346

Query: 378 LRMSL-DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           +   L     K+ A++      +  +++ L++ GI      G+  +  +H   + + +  
Sbjct: 347 VEELLDRYQAKEIAVLFRAGYQSYHLEVALSKRGIKFRKYGGLRYAEAVHVKDVVAFVRL 406

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                D  +   +            + +       +  ALR     Y  +    L+LD++
Sbjct: 407 AINPLDMPSFERVAGLSKGVGTKTAEKIYHVAAQGDFDALRKACTKYPDLWSDMLLLDKL 466

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL--VTYKTNKNSTCGNLSISDWT 554
                                 L  ++++H    +  +    +   +        I+   
Sbjct: 467 REHNLTP-------------AALIEMVIEHYTPRLQAIFPDDWPRRQQGLSELAHIASAY 513

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                 + ++ L E  +     F+E G+ +       I +   ++ +A+  +D++     
Sbjct: 514 TDLEQFVADLSL-ETPEDDADEFDEAGRVVL----STIHSSKGLEWDAVILLDLVEDRFP 568

Query: 615 GETVKPKIEK 624
                 + E 
Sbjct: 569 SRHALVRPED 578


>gi|325066919|ref|ZP_08125592.1| UvrD/REP helicase [Actinomyces oris K20]
          Length = 389

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 94/316 (29%), Gaps = 21/316 (6%)

Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK---I 190
           +   LP     +      L +++          +DL  L +      W  A+  L+    
Sbjct: 75  TWPGLPAEATGSRAFRSELRNLLARAGELGISADDLADLGHRLNVPIWGPASQLLRTWDA 134

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEH------LMKGTKGPIIIAGSTGSIPATAR 244
             +   ER  +         Q   + A +        + +     +++        ATAR
Sbjct: 135 QGRASAERRAQTRKMDTARLQDRAVEALSSWGADAVTVRRPVPDLVVVDDYQDCTAATAR 194

Query: 245 LMSTVAN---HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
           L++ +A+     + A V+   D  +    +   T              +    +  +L  
Sbjct: 195 LLTALASPDPDGHRAQVVVLGDPDVAVETFRGGTPSLL----VAAEDHSGLAATRLRLTT 250

Query: 302 FLDIKREDVKRLGNVSNEMY--GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
                      + + S  +   G +     +  P  ++                +  + V
Sbjct: 251 CYRGNPAIAAVIRDQSARVPVTGTTAHRQTTLAPRSSARSSVGLSSGASDAERPQAAAGV 310

Query: 360 ALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDIS 416
            +I A +  +E   +A ALR+    +     + A+I      A  +  +L R G+ +   
Sbjct: 311 EVILASSIWQEHAHVARALRLEHVHHGTAWSQMAVIVRSAADAETLARDLRRRGVPLASR 370

Query: 417 AGIPLSTTLHSSILTS 432
               L     ++    
Sbjct: 371 TPAVLLRAEPAAAALL 386


>gi|77456917|ref|YP_346422.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas
            fluorescens Pf0-1]
 gi|77380920|gb|ABA72433.1| exodeoxyribonuclease V beta chain [Pseudomonas fluorescens Pf0-1]
          Length = 1229

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 101/1017 (9%), Positives = 242/1017 (23%), Gaps = 124/1017 (12%)

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR----NK 122
              G  + +LP ++    +   +   D   + +        +R   L  L   WR      
Sbjct: 188  HWGGPAALLPRVR---GLFGTEREGDSDKTPSELIEECLQERRAALMELKEPWRQWADEL 244

Query: 123  LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK-WEDLHALKNEKYGMWW 181
            L    + +  ++     +         + L    +    E          L  +     W
Sbjct: 245  LAICHQGVANKTVDGRKMQARYFEPWFEKLKAWAEDETLEHLDIGTGFARLTPDGMAEAW 304

Query: 182  -------------------------------LLAADFLKIASKYWTERLVELNASSPVGY 210
                                             AA ++    +    R   +     +  
Sbjct: 305  KGEPPSHPGLDAMPVLKSSLDNLPTPDAAVLQHAAKWVGARFEDEKRRRAVMGFDDMLLR 364

Query: 211  QIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLD 263
              A ++++       L++      +I     + P   R+  ++           +    D
Sbjct: 365  LDAALQSDGGERLATLIREQFPVALIDEFQDTDPVQYRIFESIYRIEEDNPETGLFLIGD 424

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                   +      +       TT   H   +         +            +   GR
Sbjct: 425  PKQAIYAFRGADIYTYLRARQATTGRLHTLGTN--FRSSHGMVSAVNHVFERAESREQGR 482

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----------DVALIEADNEREEAI 372
               + +     +    +  +    K                    D  L  A   ++ A 
Sbjct: 483  GAFLFREKNGDNPVPFQPVEAQGRKEHLQVSGLDVPALNIWHLSTDKPLSGAVYRQQLAA 542

Query: 373  SIAIAL------------------RMSLDENKKKSALITADRNLARRVKLELT-RFGINI 413
            + A  +                  +          A++  D   A+ V+ EL  R   ++
Sbjct: 543  ACASEITTLLNGGQTGRAGFAQEGKDWRGLRPADIAILVRDGKEAQAVRGELAARGVRSV 602

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLN---DFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
             +S    + +   +  L S L A  + +      A    +   L                
Sbjct: 603  YLSDKDSVFSAQEAHDLLSWLKACAEPDVERSLKAALACITLNLPLAELERLNQDELVWE 662

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
              ++  RG +  +    +  ++   +   +    +      ++  D E  +  + H+ + 
Sbjct: 663  TRVMQFRGYRELWRKQGVLPMLRRLLHDFQLPQML------IARSDGERVLTNLLHLSEL 716

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +    +    + +   +L+            Q + L+   +L  +    + K L      
Sbjct: 717  LQQAASELDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVF 776

Query: 591  IIETGSCIKANAIEWIDIITR--------LIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
            +    S    +                  L     +    +       L  L   L    
Sbjct: 777  LPFICSAKPVDGSRLPLHYHDESGKARISLKPDAELIAVADNERLAEDLRLLYVALTRAQ 836

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
                 G+ +     +++    LS +        T  +  G A    ++      L     
Sbjct: 837  HACWLGVTDLKRGNHSSSVLHLSALGYLLGGGATLNESSGLARWLDDLQQDCSALSVVEM 896

Query: 703  LRENNIPTIASRWLQRLLVLGGTD--FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
                +      R    L           +N        L  +  L     +         
Sbjct: 897  PEATSEEYQPPRNEATLRATLLPSRRASENWWIASYSALRISDVLSVGNDEAPDSPQAQK 956

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIIT 817
               + +    +  EI     D +               +    ++     R +L   I  
Sbjct: 957  LFDDERLDPEAPREIIAGGADIHRFPRGPNPGTFLHGLLEWAGEEGFAVTRESLDDAIAR 1016

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE----- 872
               ++        +   ++ ++          P + +     +      +    +     
Sbjct: 1017 RCNRRGWEGWITTLGDWLQHLLKLPLPAGLDQPPVVLEQLKQYRVEMEFWFASHKVDVLK 1076

Query: 873  --KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG--------- 921
              +         V      A++  G+   GF D     + G   + DYK+          
Sbjct: 1077 LDEQVRQFTHNGVARVGAEAVQLNGM-FKGFIDLTFEHE-GRYYVADYKSNWLGVDDAAY 1134

Query: 922  --DNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKID 972
                 ++       D Q  L   AL     +++      R +    Y+ L+      
Sbjct: 1135 TERAMEQSILDNRYDLQYVLYLLALHRQLKARLADYDYDRHIGGALYLFLRGTRAPG 1191


>gi|323139776|ref|ZP_08074812.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
 gi|322394980|gb|EFX97545.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
          Length = 687

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/535 (10%), Positives = 130/535 (24%), Gaps = 45/535 (8%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL     +  +N      + +   ++RA  E+      I  +       I + G      
Sbjct: 43  TLAHRVAHLIVNGADPRRILLMTFSRRAAAEMTRRVERICAEALGASAGILTNGLAWAGT 102

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
           F                +     +          L ++++     S              
Sbjct: 103 FNGVGARLLRDYAGEIGLTPDFTIHD--REDAADLMNLVRHGLGFSKTESRFPTKGTC-- 158

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
                 I      EE   +D      E    W    +  L+     + E     N     
Sbjct: 159 ----LAIYSRAVNEELPLDD----VIEGCFPWCAGWSAQLRQLFAAYVEAKQTQNVLDYD 210

Query: 209 GYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
              +   +   E  +          +++     +    + ++  +A  P+G  +    D 
Sbjct: 211 DLLLYWAQTLGESALAEDIGGRFDHVLVDEYQDTNRLQSSIL--LAMKPDGRGLTVVGDD 268

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +   T ++     +  +    P   +  L       R            +   +
Sbjct: 269 AQSIYSFRAATVRNILDFPAAFS----PPADIVTLDRNYRSTR----------PILAAAN 314

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
            VI  +      +                       L+   +E ++A  +   +    + 
Sbjct: 315 CVIELASERFTKNLWTERQSGGKP-----------RLVTVPDEGDQARYVVERVLEDREI 363

Query: 385 NKK--KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
             +  + A++    + +  ++LELTR  I      G+    + H   + +LL       D
Sbjct: 364 GTRLKQQAVLFRASHHSGPLELELTRRNIPFVKFGGLKFLDSAHVKDMLALLRFAQNPRD 423

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            +A   L++          + +              +                   Q   
Sbjct: 424 RVAGFRLMQLLPGVGPASAQRVLDLMAEQPDPLSSLSDIPAPPRSGDDWTGFVEVLQYLR 483

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
           +    W + ++   +     L        T L      +    G  S   +    
Sbjct: 484 SGKAGWPAEIASARRWYEPHLERIHEDAATRLADLLQLEQMAAGYPSRERFLTEL 538


>gi|75760175|ref|ZP_00740233.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492339|gb|EAO55497.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 235

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 29/182 (15%)

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            R  +K       KK     +RGT  H ++  +     +   P    ++++ I     KE
Sbjct: 39  LRTPIKTRPRFMEKKGLTYAERGTAVHAVMQHV-----DLKKPITVEVLQEQIAGMVNKE 93

Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG----------- 895
            L    +        K+   F     K   + + +   +P  M + +             
Sbjct: 94  LL--TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEE 151

Query: 896 -IHLTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALK 945
            I + G  D +   + G + + D+KT    G  P      K         QLSL A AL+
Sbjct: 152 TILVQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALE 210

Query: 946 AG 947
             
Sbjct: 211 KS 212


>gi|323139146|ref|ZP_08074203.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
 gi|322395617|gb|EFX98161.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
          Length = 718

 Score = 61.9 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/535 (10%), Positives = 132/535 (24%), Gaps = 45/535 (8%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL     +  +N      + +   ++RA  E+      I  +       I + G      
Sbjct: 74  TLAHRVAHLIVNGADPRRILLMTFSRRAAAEMTRRVERICAEALGASAGILTNGLAWAGT 133

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
           F                +     +          L ++++     S              
Sbjct: 134 FHGVGARLLREYAGGIGLNADFTIHD--REDAADLMNLVRHELGFSKTESRFPTKGTC-- 189

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
                 I      EE   +D+       +  W       L+     + E     N     
Sbjct: 190 ----LAIYSRAVNEELPLDDVLE----SFFPWCAGWRAQLRELFAAYVEAKQTQNVLDYD 241

Query: 209 GYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
              +   +   E  +          +++     +    + ++  +A  P G  +    D 
Sbjct: 242 DLLLYWAQTLGEPALAEDIGGRFDHVLVDEYQDTNRLQSSIL--LAMKPGGRGLTVVGDD 299

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +   T ++     +  T    P   +  L               +    +   +
Sbjct: 300 AQSIYSFRAATVRNILDFPNAFT----PPADIVTLDRNYR----------STQPILAAAN 345

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
            VI  +      +       +E              LI   +E ++A  +   +    + 
Sbjct: 346 CVIELASERFTKNLWTERQSVEKP-----------RLITVPDEADQARYVVERVLEDREI 394

Query: 385 NKK--KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
             +  + A++    + +  ++LELTR  I      G+    + H   + +LL       D
Sbjct: 395 GARLKQQAVLFRASHHSGPLELELTRRNIPFVKFGGLKFLDSAHVKDMLALLRFAQNPRD 454

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            +A   L++          + +              +          +        Q   
Sbjct: 455 RVAGFRLMQLLPGVGPASAQRVLDLMAEQPDPLSSLSDIPAPPRSGDAWTGFVETLQHLR 514

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
           T    W + ++   +     L        T L      +    G  S   +    
Sbjct: 515 TGKAGWPAEIAGARRWYEPHLERIHEDAATRLADLLQLEQMAAGYPSRERFLTEL 569


>gi|323453081|gb|EGB08953.1| hypothetical protein AURANDRAFT_63493 [Aureococcus anophagefferens]
          Length = 787

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 78/770 (10%), Positives = 172/770 (22%), Gaps = 75/770 (9%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TL         +      V +   + +A +ELR    +  G+         +       
Sbjct: 32  ETLTRRVARAISSGARPEGVLVLTFSNKAARELRGRLAKHLGEAVAARVECATFHSFCLR 91

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                             ++R    A L   +        + L      +          
Sbjct: 92  L-----------------LRRFGREAGLGPDFSIFGDAAQRALVKLCCAAAGDDDDAVER 134

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            A+ +  +I   ++   +  D                        + ++ +L E  A   
Sbjct: 135 DARQVWSLIKRAKSSRLRAGDFDGRV---------------GAIFRAYSAKLREQRAVDF 179

Query: 208 VGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                      A         +G      +     +      L+  V        +    
Sbjct: 180 DDVIDVAAGLLARDGPCRSWARGRFALGFVDEFQDTSELQLALLDGVFGLER-TPLTVVG 238

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       W      +    +     +T         L  L         + + +  +  
Sbjct: 239 DDDQAIYSWRDAMGDAFGSFARRFPGAT---------LLRLTRNYRSGGHVVSAARAVVA 289

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            +       L     D    +IL  +     +  +                    L  + 
Sbjct: 290 ANAARVDKALWTARPDGSKLEILRVEGGPGAEARAA-------------AREVAKLLDAG 336

Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
            + +  + L  +     R  +  LT+ G+   I+           +   + L  +    D
Sbjct: 337 AKPRDVAVLCRSAAPALRCAENALTKLGVPCQIAGSNRFFERAPVAAALAHLRLVANELD 396

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             A A  +       G       R      L A R       +   ++  L  +  + + 
Sbjct: 397 DDACAKCLAEGCRGLGAKSVEALRRGGGPLLGACRTAAARGTLAPQQTAALWVLLARLDA 456

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
            +        S      A+ L+D +L         K  +        + +   +     +
Sbjct: 457 LYDAVASRAASASPVRSALRLLDDVLAPPVDGGDAKKREERRTARDLLEELRGVAGERER 516

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
            +            F +           + +    +    I               K K 
Sbjct: 517 ELEAAAPGLDALRHFLDTAMVAPDASEGVGDAVGTVTLCTIH--------------KSKG 562

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
            +   + +L   +           G    G    + ++          +   +     I 
Sbjct: 563 LEWPHVLLLRATDGVFPARLRDAAGDAAAGSLNGSPSRLRRRDEAAHLEEERRLFHVAIT 622

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
           +A   F   + TR                 S +L  L     T+   + +   +   +  
Sbjct: 623 RAERTFAALHATREADGNGGDAGAGASAQRSPFLDLLPKAAATNAAAHKRPATRSPAEKQ 682

Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                  K       K      A PR  +  E         A +   +L+
Sbjct: 683 PAKRPVAKARPAASSKAKR-KFAAPRRVAPPEPPGARRSRAAAFVSPLLR 731


>gi|254446951|ref|ZP_05060418.1| exodeoxyribonuclease V, beta subunit [gamma proteobacterium HTCC5015]
 gi|198263090|gb|EDY87368.1| exodeoxyribonuclease V, beta subunit [gamma proteobacterium HTCC5015]
          Length = 1215

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 86/930 (9%), Positives = 213/930 (22%), Gaps = 114/930 (12%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL-- 172
            L   W N  P+ + +   ++          +I   + L   +D           LHA   
Sbjct: 286  LEKGWTNLSPEGLAENTKKNGTPPEHELFESIPALEALFATLDE----NADTIALHAAHW 341

Query: 173  KNEKYGMWWLL-AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231
              E+        +            E L   +AS     Q           ++      +
Sbjct: 342  VAERIATHKQRRSLIGFDDMISQLAEALDTPDASDTALAQR----------IRQQYPIAL 391

Query: 232  IAGSTGSIPATARLMSTVANHPNGA--IVLPGLDCHIPTAIWNTIT-------------E 276
            +     + P   R+   +          ++   D       +                  
Sbjct: 392  VDEFQDTDPKQWRIFQRLYPEIETRQNALVMIGDPKQAIYQFRGADIYTYLDARRSIDDT 451

Query: 277  KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            +   +  +  +                  K             +           +  + 
Sbjct: 452  RRYTLPCNYRSSEPMVAAVNHVFNQGNQHKSGAFMEADIPFEAVQANGRKERFVVMEKEH 511

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-------KS 389
              +       +      +     A   A                 ++E  +         
Sbjct: 512  CALTLWYRDSDVAVGKNQYLQQSAADTASEIVRLLNLARDRRAGFINEAGQFTALAPSDI 571

Query: 390  ALITADRNLARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            A++    + A+ ++  L  R   +  +S    +  +  +  +   L A  +  +   +  
Sbjct: 572  AILVRSGSEAQVMRDALAERQLRSAYLSNKESVFDSPEARDVLHWLRACHEPRNDRHMRA 631

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
             +                A N  E    R  +   +   L                    
Sbjct: 632  ALG---TITLDLPWADLDALNHDEASWNRRYEQFAEYHQLWQRSGVLAVIYHLVWDFHLA 688

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
              + +E      + L + +      +           G   +  W +  +T  ++   DE
Sbjct: 689  ARQNAERSLSNILQLAELLQSASGQVD----------GEAGLLRWLEEHITEERDASSDE 738

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                  +   E    L  + +     G       + +          +  +        L
Sbjct: 739  Q-----VLRLESDDELIKIVTLHKSKGLEYPLVFMPFCATFRPANAKDFPQAYHNGEGQL 793

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +  + E  + +  T  L   +     ++           +  L L  A   +G+ AH  
Sbjct: 794  QLALSAEEIVSD-STTALEQCDRERLAEDLRLLYVGMTRPRHALWLGLAPTTLGR-AHKS 851

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
            ++       +      + +  T           L                  +   LD T
Sbjct: 852  KIGQSVWGHLLNLPADDIDKKTFQEVIKAPFQALAEGAPSVQFSTPELNSEPYLGHLDAT 911

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP------HFKKD 802
                  +  +  PP        +       I +  + +  R+                + 
Sbjct: 912  PLGQPRECQRAQPPRWWMASYSALLRGADPIAETASGFDERLADEGERRKASTELPSPEG 971

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                 RG +  + +   ++     +       + +       K  L       W+    +
Sbjct: 972  LHPFPRGAMPGDFLHRQLELMGEAHFERAEQRLAEFKSELLPKLQLR--QWEHWQDRLPQ 1029

Query: 863  ISHSFL-------EHEEKIQSSIEKIFVNIPAKMAIESIGIH------------------ 897
                 +       +++    + ++    +   +    + G                    
Sbjct: 1030 ALLGIVQQALPLPDNQRVALADLKPAQYHTEMEFHFAAHGCRSTDIDRLIGHDPSGLKPQ 1089

Query: 898  -----LTGFADRIDLLKSGFVDITDYKTGDNPK----------KETAQKL-IDPQLSLEA 941
                 L GF D +   + G   + DYK+                E+ ++   D Q +L +
Sbjct: 1090 SLNGLLKGFIDLVFEHE-GRYYVLDYKSNYLGPDDSAYTQDAMAESVREHRYDLQYALYS 1148

Query: 942  AALKAGSFSQID----CRKVANLFYIRLKQ 967
             AL      ++      +      Y  L+ 
Sbjct: 1149 LALHRLLKQRLPNYDYDKHFGGAIYYFLRG 1178


>gi|220903357|ref|YP_002478669.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219867656|gb|ACL47991.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 768

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 59/682 (8%), Positives = 171/682 (25%), Gaps = 78/682 (11%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
           +     + ++P  +    +   T++A QE+      +     +       +       F 
Sbjct: 41  LAWLAENGVSPESM---LLLTFTRKAAQEMLHRAGLLLDHGLSG------VQGGTFHAFA 91

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
             +L  +           +++ A +    ++   D+                  +    +
Sbjct: 92  FSVLRRWKPAWLADRPFTVMDAADITSAVKHCRDDLKLGKG-----------DKSFPKTQ 140

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            +  ++     +E   +++   +           A+ L    + +     E         
Sbjct: 141 TVVGLLSKARNKELPLDEVLRREAFHLLPH----AESLSRLGEAYNTYRREKGLMDYDDL 196

Query: 211 QIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI--VLPGLD 263
              L         A   ++     I++     +    AR++  +A   +     V+   D
Sbjct: 197 LFELEALLRQNEVAAASLRQRFSHILVDEYQDTNLVQARIVRLLAGPEDAPPGNVMAVGD 256

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                  +     ++             P   + +L +     R                
Sbjct: 257 EAQSIYAFRGANVRNILDFPKLF-----PGARVIRLEENYRSTR---------------- 295

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
                      ++      +    K+   ++    V L+   ++  +A  +   +   L 
Sbjct: 296 -----PVLEVANSLLAHAAESFRKKLFTRKEGGEPVRLVTPLSDASQARLVVRRIEELLR 350

Query: 384 EN-KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
           ++   + A++      +  +++ L + GI      G+  +   H   + +    +    D
Sbjct: 351 DHMPHEIAVLFRAGFHSYNLEMALNQAGIGFRKYGGLRYTEAAHVKDVMAYARLLLNPLD 410

Query: 443 FMAIATLVKHPLAKFG----------------FPEKYLSRAKNALELVALRGNKNSYDIM 486
             A A +                           EK L+R    LE V    +  +  + 
Sbjct: 411 LPAFARVAAQHSGIGPKTVEKLYNVIRSGDAAATEKALARHTGFLEDVRFINDLRTRPMA 470

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
              +L       +     +        ++  E  + +    +     L            
Sbjct: 471 PSSTLAAVLEHYRPRLESLYPEDWPRRQQGLEEIIQMASGYVHLDLFLADLALESPEEDE 530

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
           N +    T  TV   + +  +    +  +      +   +      E    +        
Sbjct: 531 NDAEGKITLSTVHSAKGLEWNAVCIIDLVEDRFPSRHALARPEDFEEERRLMYVACTRAR 590

Query: 607 DIITRLIDGETVKPKIEKSSTL----FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             +               S  +    F+       +  +     GG++        +   
Sbjct: 591 QCLDLYAPASLYNRAERGSQHVNQSPFVRELAPGLVEEWVEGFGGGISRRAAGGFGSPGA 650

Query: 663 FLSRVMQSDLNLKTAEKYIGQA 684
           F  R       ++  +++    
Sbjct: 651 FQPRPATRPQGMQPPQEHAAYD 672


>gi|325663486|ref|ZP_08151896.1| recombination helicase AddA [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470385|gb|EGC73616.1| recombination helicase AddA [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 1052

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 64/615 (10%), Positives = 152/615 (24%), Gaps = 58/615 (9%)

Query: 158 IIETEEKKWEDLHALKNE--KYGMWWLLAADFL--KIASKYWTERLVELNASSPVGYQIA 213
            +    K    L  L             +   +      +Y    L E            
Sbjct: 150 DMVEAGKTMSVLAGLVQSFADAFEEKKRSKHLIDFSDMEQYALRILTEKTEEG------- 202

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-VLPGLDCHIPTAIWN 272
           L+ +EA    +     ++I     S      ++++V+    G   V    D       + 
Sbjct: 203 LIPSEAAKDYQNKFAEVMIDEYQDSNLIQEAILTSVSTVSEGNYNVFMVGDVKQSIYRFR 262

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED-VKRLGNVSNEMYGRSMVISKSF 331
               +      +        Q     L      +RE            M      I+   
Sbjct: 263 LSRPELFMEKFNTYNIEES-QKQRIDLHKNFRSRREVLDSTNFVFEQIMTKELGEITYDE 321

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDV-----ALIEADNEREEAISIAIALRMSLDEN- 385
                      +    K   +    ++       + EA +   EA +IA  ++  +  + 
Sbjct: 322 KAALYVGADYEEKPGMKAEVLLVNTAENFSEQTEVREASDRELEARAIAARIKQLVGAHP 381

Query: 386 -------------KKKSALITADRNLA-RRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
                             ++T             L R GI     +      T    +L 
Sbjct: 382 VFDKKSGAYRPAKYSDIVILTRSLKGWTDVFTEVLNREGIPTFTGSKEGYFETREIRLLL 441

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
             L  +      + +A ++K   A     E        A      +       + D + +
Sbjct: 442 DYLRVLDNPRQDLPLAAVLKSMFAGLSSEEF-------AKIKCEEKEVPFYEAVQDYRRM 494

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
             DR   +K +      +             L+  IL                    ++ 
Sbjct: 495 GDDRAIQEKLDRCYEKMEDFRERLPYTAIHELLWQILDETGYGNYVAAMPGGGQRAANLE 554

Query: 552 DWTKLTVTCLQNVCLDE---HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
              +  +              R +  L   +     +++  +  +T   +  +  + ++ 
Sbjct: 555 MLVEKAIAFEATSYKGLFNFVRYIEQLRKYDIDYGEANIADEQADTVRLMSIHKSKGLEF 614

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
              ++ G + +  ++ ++   ++             +  G++       T    FL +V+
Sbjct: 615 PIVIVAGMSKRFNMQDTTGSIVVHPE----------LGVGVDAVDLEYRTKIPTFLKKVI 664

Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
           Q  + L   E    +    +      +  LI   S+        +   +Q          
Sbjct: 665 QRKVQL---ENLGEELRVLYVALTRAKEKLILIGSISNLEKKLKSFASIQSREQTALPFG 721

Query: 728 FDNLKKRGQCYLDWT 742
             +       ++   
Sbjct: 722 VLSRATSYFDWILPA 736



 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 47/161 (29%), Gaps = 22/161 (13%)

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI-IWRHLF 860
                  RGT +H  +       ++         +    +   E+  + P +   I+    
Sbjct: 876  TLSGASRGTAYHKFLE-----LLDFGHSYTISQLYAEAEKFCEEGKMQPEMMESIYYKDI 930

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI---------------HLTGFADRI 905
              +  S L    +  +    +    P  + + +  I                + G  D  
Sbjct: 931  LGLLESPLGLRLRKAAQSGCLKKEQPFVLGVSADTIYPELFERQEEEEELLIVQGIIDVY 990

Query: 906  DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
                 G + + DYKT     +E   +  + QLS     L+ 
Sbjct: 991  FEEADG-IVVVDYKTDRAASREELAERYEKQLSYYGEVLER 1030


>gi|269138628|ref|YP_003295328.1| DNA helicase IV [Edwardsiella tarda EIB202]
 gi|267984288|gb|ACY84117.1| DNA helicase IV [Edwardsiella tarda EIB202]
 gi|304558640|gb|ADM41304.1| DNA helicase IV [Edwardsiella tarda FL6-60]
          Length = 700

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 59/248 (23%), Gaps = 13/248 (5%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
               +RA QE+     +  G         ++   +              ++   S+ +  
Sbjct: 263 LAFGRRAAQEMTQRLRQTPGCAEV---QARTFHGLALYIVNQTARRPVAISRLASDREAR 319

Query: 110 --LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--------LAKNLADIIDII 159
               LA        K           + L   +      W        LA  LA  I ++
Sbjct: 320 DAFLLAEWQRQCAEKKSQANGWRQWLTLLFDALPEREDFWQDTALQARLAPRLAYWIGLL 379

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
                    +    +E     +      L    K W   L +  A               
Sbjct: 380 REHGGSQAAMVEQASEALRAPFQQRLRLLAPLLKAWKAALKQEGALDFPALLQQAQAQLE 439

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
           +         I++       P  ARL++ + +  + + +    D       ++      T
Sbjct: 440 KGRFISPWRHILVDEFQDISPQRARLLAALRSQNSHSALFAVGDDWQAIYRFSGAQLTLT 499

Query: 280 NITSSNTT 287
                   
Sbjct: 500 TAFHHYFG 507


>gi|115374363|ref|ZP_01461647.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|310818971|ref|YP_003951329.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|115368673|gb|EAU67624.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|309392043|gb|ADO69502.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
          Length = 799

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 71/679 (10%), Positives = 170/679 (25%), Gaps = 64/679 (9%)

Query: 27  NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR-----------SEFIEITGKKS--- 72
              ++   R+  ++ +L   + I   T++A +E+R              +          
Sbjct: 48  AVLILRALRHVLVDRVLPERIMITTFTRKAAKEIRTRLIEWGTPLLEALLADRAGPLDAD 107

Query: 73  --TILPIIK-------SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123
               L  +        +L  + EE  +        L   V        LAR   I++   
Sbjct: 108 YRAFLRQVDINRFVTGTLDSLCEEALSGARGPGERLPVLVEAFAANQLLARRGEIYKTAE 167

Query: 124 PDIIKDLYPESPLSLPISPANAIW-LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
                 L      +    P   +  + + +  ++D +  +E    +              
Sbjct: 168 RLGQPFLDYLGLYTNTGDPPETLGDMTRVVRMLVDRLVQDEVDLAEYVKPGPH------Q 221

Query: 183 LAADFLKIASKYWTERLVELNASS-PVGYQIALMRAEAEHLMKG--TKGPIIIAGSTGSI 239
            A   +    K +TE L   +    P   ++ L R  A+ +       G +++     + 
Sbjct: 222 AARQAVHDIFKRYTESLRSSHQMDFPTLERVFLERLRADRVPDLVSHLGVLLVDEYQDTN 281

Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-THPQYSLAK 298
           P    +   +A    GA +    D       +   T +      +    +   P   L  
Sbjct: 282 PLQEHIYLELARRT-GAALTVVGDDDQSLYRFRGATIELFRDFQARVANALGGPAPRLLY 340

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
           L D      E V  L          +    +   P                 N       
Sbjct: 341 LTDNYRSTPEIVSFLNGFIQNDPDFASARIQPPKPMIR-------------ANQPSGGVP 387

Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA- 417
           V  +  +N  E A+ +A  L     +  + +    A+         +L          + 
Sbjct: 388 VLGMFRNNAEERAVDLADFLNQVFRQGGRPADARLAEPIRPSPHGGDLGDAVFLSHTVSE 447

Query: 418 -GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
                  T  S     L   + +  +   I     +P  +       + RA   +     
Sbjct: 448 FRRGFRGTPPS---ERLPWLLRQNLEKQGILCF--NPRGRALKDIPEVGRALGLVLECLD 502

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                +     +    L   A           ++ L+     +     + + + +     
Sbjct: 503 AAEPGNEQGRIVADTPLTHAARSVFLRWRQDARALLATLPPAVIPR-GESLQEVVARWQR 561

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
           +  +         + D     +  +     D   ++            ++          
Sbjct: 562 FARHGQGVGTEWPLLDVLYNLLPWMPAFQDDPEHQVYLEAVSRAAAQATAFSRHRSLIFR 621

Query: 597 CIKANAIEWIDIITRLIDG--------ETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                      +I  ++          +           L ++   +++ L F  +I+  
Sbjct: 622 EEPHRTRSIRAVIQDVLAPIADDLVEVDEDIMPSVPRGRLNLMTIHQAKGLEFPLVIVDI 681

Query: 649 LNEGVWPKNTAKNPFLSRV 667
            ++ +      +       
Sbjct: 682 ASDFLSNHPKQRFRRFPDE 700


>gi|301090630|ref|XP_002895522.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262098194|gb|EEY56246.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 941

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 56/215 (26%), Gaps = 32/215 (14%)

Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
             P   R    P         S+S+I + +  P+  Y  RI+KLD              G
Sbjct: 701 PVPAATRASYEPSH------LSYSQISEYLRCPHRYYLSRIMKLD-----GDVSTSMMFG 749

Query: 810 TLFHNII-------------TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
              H  I              E+ ++       E     +                    
Sbjct: 750 RALHEGIAAFAKSIAAAQRNDEITEEVKTLAAVEAEEAFRGAWAGDGYGLFTSKEEASFV 809

Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL----KSGF 912
                     F+E         E + V       +    + L G  DRID +      G 
Sbjct: 810 LERAMMALWEFIETHYGDLQLKEIVHVEKDFSFHVPEANVELRGVWDRIDRVFNPIGDGS 869

Query: 913 V-DIT-DYKTGDNPKKETAQKLI--DPQLSLEAAA 943
              +  ++K+         +KL     QL +   A
Sbjct: 870 FSLVIKEFKSNMGGADRNMRKLASDSLQLKMYMYA 904


>gi|262067582|ref|ZP_06027194.1| conserved hypothetical protein [Fusobacterium periodonticum ATCC
            33693]
 gi|291378697|gb|EFE86215.1| conserved hypothetical protein [Fusobacterium periodonticum ATCC
            33693]
          Length = 895

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 124/408 (30%), Gaps = 50/408 (12%)

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
             L   +    PK  A +   +   +  L LKT E  I    + F         I   SL 
Sbjct: 493  ALIYADSQSLPKIKANSNLFTEQQKMKLALKTNEDEILIQKYRFFQNILNLDKITIYSLV 552

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRG---QCYLDWTRKLDYTTKQPHYKRPKPFP 761
              +I    S ++  L+        D    +G    CYL    +             K   
Sbjct: 553  NQDINIDFSPFIYELINKYSAKELDTDDLKGFFKSCYLQNKTEDFTKDNVFFRAFSKKNT 612

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK--KDPDRTDRGTLFHNIITEL 819
                   T    +   L  +    +  +I ++D +              G + H  + ++
Sbjct: 613  DFINNTLTIGAYDYILLKKNETFFFLNKICEIDSVSETSSVNGMSPKVLGNILHKTLEDI 672

Query: 820  IKKRINKNTPEINHLMK--QIIDSHFEKENLPP----------HIDIIWRHLFHKISHSF 867
             K        +   L+     I  + EK               +++ +          +F
Sbjct: 673  FKSNWKNILKDSTKLLLSKDEIKEYLEKHIWKEKLKIENFMELYLNEVLFPRLINNIENF 732

Query: 868  --LEHEEKIQSSIEKIFVNIPAK------MAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
              + +EE   S I++I     +       +  + I + L G AD +   +     I D+K
Sbjct: 733  FKVLYEELKDSKIKRIEAEKESTTKNVAYLEHKGIQVVLNGRADLLIETE-KARYIIDFK 791

Query: 920  TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDK 978
            TG+    +        QL   +       F   D    V +  Y      F  +    D 
Sbjct: 792  TGN--YNKD-------QLEFYSIM-----FYGSDTSLPVYSAAY-----NFWEEEKDFDF 832

Query: 979  KKYSADELSEKSLKNLIEIVTLLQNGEQPFI--SHLRLSEKSNIQSEY 1024
             K+  D+L+EK   N    +    + +  +   S   L E +   +EY
Sbjct: 833  NKHLIDQLAEK-DSNFKHFLKQFIDTDH-YTLPSKSNLKENNFDFNEY 878


>gi|289804629|ref|ZP_06535258.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 403

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/404 (10%), Positives = 90/404 (22%), Gaps = 50/404 (12%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 7   DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 58

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 59  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 114

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 115 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 174

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   + +  +  H    
Sbjct: 175 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLKALQALGKHIEIH 233

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298
           ++      +    I +              ++         +                  
Sbjct: 234 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 293

Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            LL        D   L                   N ++     I +             
Sbjct: 294 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 353

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
               +    +    + ++     + + E   +   L   L+ + 
Sbjct: 354 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADP 397


>gi|327484827|gb|AEA79234.1| Exodeoxyribonuclease V beta chain RecB [Vibrio cholerae LMA3894-4]
          Length = 1208

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 92/893 (10%), Positives = 207/893 (23%), Gaps = 117/893 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+   +  +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERRTTLYPVAMIDEFQDTDPLQYSIFSRLYLGYPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   V   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLAESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDTESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F            +  +E  I  +    L++   L   D  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF----------LLQDGQEGGIADLQQALLKQCENL--PDVV 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                 +         +LD                      +    +     +DP      
Sbjct: 872  QCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPL 931

Query: 789  RILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINH 833
              +    +   ++                      GT  H++  E+  ++   + P    
Sbjct: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKI 991

Query: 834  LMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV 883
            ++  +     E E LP    ++                +I  +    E +    IE +  
Sbjct: 992  ILDLMESEQIESEWLPVLQHLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 884  ---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTG-------- 921
                     + P       +G H     L GF D +   + G   + D+K+         
Sbjct: 1052 PTLNRITQRHDPLSAQAGDLGFHAVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 922  ---DNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                      A    D Q  + A AL     S++      +    +FY+ L+ 
Sbjct: 1111 YHPQRLSGAMADHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRG 1163


>gi|158312758|ref|YP_001505266.1| hypothetical protein Franean1_0904 [Frankia sp. EAN1pec]
 gi|158108163|gb|ABW10360.1| conserved hypothetical protein [Frankia sp. EAN1pec]
          Length = 276

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 47/171 (27%), Gaps = 10/171 (5%)

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
            +  +  + + S +    + P       + +                G   HN +     
Sbjct: 8   EMPRRLFSCTPSRLASFEDCPRRYRMTYLDRPAPPKGPPWAHT--SVGVSVHNALHRWWD 65

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
             +   TPE    + +      E           WR     +  ++      I  + E  
Sbjct: 66  VPLPARTPERAGTLLRTSW--VEDGFRDGAQSAAWRERAAGMVEAYTA---GIDPAAEPR 120

Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
            V        + +     G  DR+D    G + + DYKTG     +   + 
Sbjct: 121 AVERQVATRTDMLAF--HGRVDRLDERG-GELVVVDYKTGRRAPTDDDARG 168


>gi|328480143|gb|EGF49102.1| ATP-dependent nuclease subunit B [Lactobacillus rhamnosus MTCC
           5462]
          Length = 398

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 88/331 (26%), Gaps = 27/331 (8%)

Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIA 191
           ++ L++    A        LAD +  +       EDL              A    L I 
Sbjct: 91  QADLTIYAGEAQHTGFVTQLADQLSELMIGRITAEDLANTVAALTPGDRHRAKLRDLGII 150

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              +     E+   +     ++ ++ +A      T   I +        + + L+ T+  
Sbjct: 151 LDQYEA---EIGPYATTASLLSGLQ-QAMRTHDLTHTFIYLNHFNVFSASESALVETMLE 206

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                 +   LD   PTA                            +L   L  K + ++
Sbjct: 207 TAAEVTIGLVLDRPYPTAPPVAPNLFLPAG----------------RLYHRLYQKAKTMR 250

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
               +      R + +    +    S  +    +E +          V L  A +  +E 
Sbjct: 251 APIRLDRFAQPRHLSLG---MRQVASWWQANTNIEPQPAPPANVADQVHLATATDSYQEL 307

Query: 372 ISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
             +A ++  ++    +      L       A  +      F I        P+       
Sbjct: 308 RHVAQSIYQAVRNGARYRDFVILARRLDPYATIIPAIFAEFQIPQFTDLQRPMKDHPLVV 367

Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
           ++ SL         +  I  L+   L     
Sbjct: 368 LIESLFAIQDHDYQYQDIMRLLHTELCCRRR 398


>gi|319954736|ref|YP_004166003.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237]
 gi|319423396|gb|ADV50505.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237]
          Length = 686

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 67/695 (9%), Positives = 185/695 (26%), Gaps = 106/695 (15%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T++    +   + +  + + I   TK+A  E+         + ++      +      +
Sbjct: 34  RTIIARAAHLIASGVDPSKIQILTFTKKAANEIVERVKASLPQSNSQAISGATFHSWCNQ 93

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                  L       V +    L + ++I          ++    +       +      
Sbjct: 94  LILKYPNLFGAAAFTVIDPDDQLGIMKMISGTHADTYAKLRIKPQQLLDIYSYARNTKKN 153

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
           L  ++  ++      +   +     +              +++  + + ++ +E      
Sbjct: 154 LTASIRILL---FKSKVDKD--TDYEIAAMKPH-------VEVLLRAYQQKKMEQRYLDY 201

Query: 208 VGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
               + +       A+A  L+      +++     + P    L+S          +    
Sbjct: 202 DDLLLVVATQLKTNADARELLAQNLEYLLVDEMQDTNPLQWELLSPFVEICK---LFCVG 258

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       +     K+ +           PQ  + KL       +               
Sbjct: 259 DDAQSIYSFRGADFKNVHQFKDRV-----PQSEVYKLEKNYRSTQ--------------- 298

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
             ++   ++L    +   N  +   + P  +    +V+     +E +EA  IA  +  + 
Sbjct: 299 -EILDLSNWLLDHATIDYNKRLEAVRGPGEKPIILNVS-----DEWQEANWIADEILKNY 352

Query: 383 DENKKKSA---LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
            +  +  A   +++  +   + ++    R  I      G       H   L SLL  +  
Sbjct: 353 TDEDRNFADHLILSRSQYYTKSLQAVFIRRKIPYVTYGGRKFLQAAHIKDLVSLLRIVNN 412

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
             D +A    +      F      +  ++       +           + +L+       
Sbjct: 413 PYDEIAWVRFLT-----FWEGIGEVRASR------IMAAIIADEGKTAIATLLA--ANIS 459

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
             +  +     R   ++K     +V+   + +   + +K  K+ T    +     KL   
Sbjct: 460 GTDGQIISELYRAVTQEKGKVGKMVEISYEAMALGLAFKYRKDWTEKRKADFPVLKLLAE 519

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
              ++       L +   +  G  + +      +                          
Sbjct: 520 SYASLGEFIGEGLLDNAEKMNGANVLTESKLSTDE------------------------- 554

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
               +   + I     ++ L  D  I+  ++               +   S  +L   + 
Sbjct: 555 ----QKDHVIISTIHSAKGLEADVCIVLNVS--------------PKSFPSAYSLDDIDA 596

Query: 680 YIGQAAHDFEMANGTR-HLIYTRSLRENNIPTIAS 713
                   +      +  LI TR+    +     S
Sbjct: 597 IEEDRRVLYVALTRAKNRLIITRNTASISAVHARS 631


>gi|56476967|ref|YP_158556.1| exodeoxyribonuclease V, gamma subunit [Aromatoleum aromaticum EbN1]
 gi|56313010|emb|CAI07655.1| exodeoxyribonuclease V, gamma subunit [Aromatoleum aromaticum EbN1]
          Length = 1122

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 67/728 (9%), Positives = 166/728 (22%), Gaps = 42/728 (5%)

Query: 35  RYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL 94
           R     P       I VP+    + +        G  + +     +       ++    +
Sbjct: 20  RLAVEQPGPFGGREIVVPSAALRRSVELAVARREGVAANLRFSYLA-------QWLWSQI 72

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
                    S     L + R+   +++            S             LA+ +A 
Sbjct: 73  DKVVPVGEQSPFAPALLVWRIFEQFQDAAW--TGAHPRLSRYLGTADTTMRFELAERVAR 130

Query: 155 IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN--ASSPVGYQI 212
             D   T   +W    +            A       +  W     EL   +  P     
Sbjct: 131 AFDHYLTYRPRWLAEWSAGRT-VAGLPDDARADEAWQAGLWRRLTAELGTRSEHPAETFF 189

Query: 213 ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
            ++ A  + L       + +       P    ++  ++   +  + +          I  
Sbjct: 190 RVIAAAGDALPGFLPESVHVFCLPAMPPLYRDVLRELSQRVDVRLYVLNPCREYWFEIVE 249

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
                       +  + +  +   A             +  G    E          S L
Sbjct: 250 PRRLAWLAGQQQDLYFESGNRLLAAWGRQTQAHIDLLFEGEGAPEIEDSLFVPTGGASLL 309

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKK 388
                 + +          +      V +    +   E   +   L              
Sbjct: 310 AQLHDAVLDLVDPAPGSIALADDDRSVEVHVCHSITRELEVLHDRLLALFAAPDAPRPDD 369

Query: 389 SALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
             ++T D + A  +   +     T   I   I+          + +L + L         
Sbjct: 370 ILVVTPDLDAAAPLIEAVFGTAPTLRRIPWTITGLGQTRVNPVARVLDAALALAASRFPA 429

Query: 444 MAIATLVKHPLAKFGFP--------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             +  L++ P     F              RA      +     +        +  +++ 
Sbjct: 430 SRVFDLLQQPPVARRFGLDGADLEQVHEWLRAAGVRWGLDGAHRRRLDLPSVDRHSLVEG 489

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
           +        +    +   E+      +L    L    P                   W +
Sbjct: 490 LHRLFLAYALGDGSACPGEDGDGSGPVLFGGRLGAGNPEGGDALALGRLWRYAETLQWLE 549

Query: 556 LTVTCLQNVCLD--------EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
                  +            +    P++ + ++ + + +  +++    +     +   + 
Sbjct: 550 AATRRPLDADGWRKLLVELLDRLVPPDVEWADDRRAVLAASAELHANMTAGGLRSPVPLA 609

Query: 608 IITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
           ++   +      P         +        R L +  +   GL++G +P       F  
Sbjct: 610 LVHDALAALLDDPARGGVPCGAVTFSAMTSLRSLPYRVVCAIGLDDGAFPGAERAVEFDL 669

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLG 723
                    +           D  +      +  + S R   +N     S  +  LL   
Sbjct: 670 MAKHGARGDRQRRDDERNLFLDL-LLAARDCVHLSYSGRSVRDNSEKPPSVLVDELLDYA 728

Query: 724 GTDFFDNL 731
                 + 
Sbjct: 729 ARACAADP 736


>gi|229528683|ref|ZP_04418073.1| exodeoxyribonuclease V beta chain [Vibrio cholerae 12129(1)]
 gi|229332457|gb|EEN97943.1| exodeoxyribonuclease V beta chain [Vibrio cholerae 12129(1)]
          Length = 1208

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 92/893 (10%), Positives = 206/893 (23%), Gaps = 117/893 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLGYPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   V   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLAESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDTESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F            +  +E  I  +    L++   L   D  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF----------LLQDGQEGGIADLQQALLKQCENL--PDVV 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                 +         +LD                      +    +     +DP      
Sbjct: 872  QCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPL 931

Query: 789  RILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINH 833
              +    +   ++                      GT  H++  E+  ++   + P    
Sbjct: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKI 991

Query: 834  LMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV 883
            ++  +     E E LP    ++                +I  +    E +    IE +  
Sbjct: 992  ILDLMESEQIESEWLPVLQHLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 884  ---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTG-------- 921
                     + P       +G H     L GF D +   + G   + D+K+         
Sbjct: 1052 PTLNRITQRHDPLSAQAGDLGFHAVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 922  ---DNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                      A    D Q  + A AL     S++      +    +FY+ L+ 
Sbjct: 1111 YHPQRLSGAMADHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRG 1163


>gi|240142401|ref|YP_002966911.1| putative DNA helicase II [Methylobacterium extorquens AM1]
 gi|240012345|gb|ACS43570.1| putative DNA helicase II [Methylobacterium extorquens AM1]
          Length = 707

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 67/735 (9%), Positives = 179/735 (24%), Gaps = 87/735 (11%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           L   +    R   ++P   +S+     T +A +E+R     +TG  +  L  + +   + 
Sbjct: 43  LTARIAHLVRERGVDP---SSIVGTTFTNKAAREIRERVGAVTGDAAAAL-RLGTFHSLG 98

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                     +   +     + +  E A L+     +   +     P+   +L       
Sbjct: 99  ARILRRHASAAGFQDRSFVVLPQS-EAAELLQRIVEEQRLVRAVPLPDCDPALSDE---- 153

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER-LVELNA 204
                               WE L A  +                A   W    L     
Sbjct: 154 -------------------DWERLSAAADGDRRRETAAFVREAARAIARWKSWGLTAPMV 194

Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIII---AGSTGSIPATARLMS---TVANHPNGAIV 258
           + P   +    +          +  +     A     +     L+     V+    G++ 
Sbjct: 195 ADPSRGRRDQGQEAFAATYLAYQRALEARNMADFGDLVLKALVLLEDDPRVSRAEAGSVA 254

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
              +D             ++   ++ +         ++           + +   G   +
Sbjct: 255 HLLVDEAQDANAVQVRFARALAASAESVFAVGDENQNIMAFQGAYPGAMQAIAGPGATLH 314

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            +        +   P +     N       + + +   +   ++  D+E  EA  IA A 
Sbjct: 315 VLTRNRRCTDEILRPANEVVRWNRGSRRGALVSGRSGPAP-QVVAYDSEVAEAHGIAKAA 373

Query: 379 RMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           +  + +       A++     + +  +    R  +   +  G        +  + + L  
Sbjct: 374 KQLIADGTDPSKIAVLVRSAWVLKPYEEAFLRAKVPFAVVGGRNALDREEAKDVVAFLRL 433

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                D +A   +   P                                  L   V++ +
Sbjct: 434 ATSPRDDLAFRRIANKP-------------------------------ARGLGQAVVEAV 462

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
               + +     ++ L+  +           L+ +   +     + +      + +    
Sbjct: 463 VGHVSASGRTFHEACLAVAEAGHLEPRACEGLEILAEGLRLLYARAAGTKPDGLVEIAVT 522

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                +++   E  +          +  +     + E    +   +    + +       
Sbjct: 523 RTGYEEHLDRSEGDRKERRATVAMLRRSARDAEDLTEFLETLALMSDLEFEGLRE----- 577

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
                    + + I     ++ L FD + L     GV+P   A +  +        N   
Sbjct: 578 --------GARVKISTIHAAKGLEFDEVFLPCWESGVFPNPRAVDEGVRGRPGDPWNGPI 629

Query: 677 AEKYIGQAAHDFEMANGTRH-LIYTRSLRENN----IPTIASRWLQRLLVLGGTDFFDNL 731
                 +           RH +  + +         +    S  L    +        +L
Sbjct: 630 GGGVDEERRLAHVALTRARHGVHVSYATARIGFGAFLGAGPSALLAEADLELTAAPNGDL 689

Query: 732 KKRGQCYLDWTRKLD 746
           +              
Sbjct: 690 RPAKATRSSRMPAAR 704


>gi|295105936|emb|CBL03479.1| Superfamily I DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 732

 Score = 61.5 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 55/527 (10%), Positives = 118/527 (22%), Gaps = 92/527 (17%)

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
               +++            LM  +A +     V+   D       W     +        
Sbjct: 234 RLEYVMVDEFQDIDGLQHELMEVLAGYHKNLFVV--GDPDQTIYTWRGADVRYLLDFDKR 291

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                 P+     +L+        V    ++  +   R      +        + +    
Sbjct: 292 F-----PKTHTVMMLENYRSAPRVVAVANSLIEKNRERMPKRLVAARLAHGPTVWHH--- 343

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVK 403
                             A +  +EA  IA        E    +  A++      +R V+
Sbjct: 344 ------------------AKSAADEADWIAQGALALHVEGVAFRDMAVLYRAHYASRPVE 385

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
             L R  +   + +G+P           S L  +    D +  A +   P    G     
Sbjct: 386 EALLRAEVPHAVHSGVPFFGRREIKDALSYLRLVAYR-DDLDFARVANVPKRNLGQRRMA 444

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
             R                                          +     E   LA   
Sbjct: 445 FLR-------------------------------------QQADERGCSLYEALALAADD 467

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                     L+      +S+     +S+         ++      R   +    +    
Sbjct: 468 DLFKRTKARQLLDLIERFHSSYEGRPVSEVLAAV--LSESGYERALRTEGSQERLDNLAE 525

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
           L     +   T    +     ++  +    + + +    +    + ++    ++ L F  
Sbjct: 526 LKQSVYEFETTCGE-EVTLEHYLAHVALFSNADAM---DDAQDKVRLMTVHAAKGLEFRH 581

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRS 702
           + L  ++EGV P                    T +    +    F      R  L  T +
Sbjct: 582 VFLCSMSEGVLPSRKTS---------------TPQGMEEERRLAFVAMTRARDGLYLTEA 626

Query: 703 --LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                       SR+L  +              +           D 
Sbjct: 627 EGRSHEGAARYPSRFLLDIDPAALEFSDKPSDPQMADARSVYALTDR 673


>gi|159036342|ref|YP_001535595.1| hypothetical protein Sare_0683 [Salinispora arenicola CNS-205]
 gi|157915177|gb|ABV96604.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
          Length = 302

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 49/197 (24%), Gaps = 14/197 (7%)

Query: 741 WTRKLDYTTKQPHYKRPKPFPP--LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
              +   +  +P    P+      +  +    + S +    + P       + +      
Sbjct: 3   RAGRPSTSPPRPRAAEPEQLGFEGMPERLFVCTPSRLGAYADCPRRYRYSYVDRPAPSKG 62

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
                +    G   H  +       +++        + +            P      R 
Sbjct: 63  PPWAHN--SLGASVHTALKNWYALPVDRRRSAALATLLKGTW--VRDGYRDP---EQERA 115

Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS---GFVDI 915
            F +       +   +    E + V     +    +     G ADRID         + I
Sbjct: 116 AFRRALGWLESYVATLDPETEPLGVERVVAVKTGVLAF--NGRADRIDSRPGPAGAELAI 173

Query: 916 TDYKTGDNPKKETAQKL 932
            DYKTG         + 
Sbjct: 174 VDYKTGRAGLDTDDARG 190


>gi|331087018|ref|ZP_08336093.1| recombination helicase AddA [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409468|gb|EGG88911.1| recombination helicase AddA [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 1229

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 62/615 (10%), Positives = 157/615 (25%), Gaps = 58/615 (9%)

Query: 158 IIETEEKKWEDLHALKNE--KYGMWWLLAADFL--KIASKYWTERLVELNASSPVGYQIA 213
            +    K    L  L             +   +      +Y    L E            
Sbjct: 327 DMVEAGKTMSVLAGLVQSFADVFEEKKRSKHLIDFSDMEQYALRILTEKTEEG------- 379

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-VLPGLDCHIPTAIWN 272
           L+ +EA    +     ++I     S      ++++V+    G   V    D       + 
Sbjct: 380 LIPSEAAKDYQKKFAEVMIDEYQDSNLIQEAILTSVSTVSEGNYNVFMVGDVKQSIYRFR 439

Query: 273 TITEKSTNITSSNTTYSTHPQYS------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               +      +  +     +             + LD      +++             
Sbjct: 440 LSRPELFMEKFNTYSIEESQKQRIDLHKNFRSRREVLDSTNFVFEQI-MTKELGEITYDE 498

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN- 385
            +  ++  D  +    +     +   +       + EA +   EA +IA  ++  +  + 
Sbjct: 499 KAALYVGADYEEKPGMETEVLLVNTAEDFSEQTEVREASDRELEARAIAARIKQLVGVHP 558

Query: 386 -------------KKKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILT 431
                             ++T        V  E L R GI     +      T    +L 
Sbjct: 559 VFDKKSGAYRPAKYSDIVILTRSLKGWTDVFTEVLNREGIPTFTGSKEGYFETREIRLLL 618

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
             L  +      + +A ++K   A     E        A      +       + D + +
Sbjct: 619 DYLRVLDNPRQDLPLAAVLKSMFAGLSSEEF-------AKIKCEEKEVPFYQAVQDYRRM 671

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
             DR   +K +      +             L+  IL                    ++ 
Sbjct: 672 GDDRAIQEKLDRCYEKMEDFRERLPYTAIHELLWQILDETGYGNYVAAMPGGGQRAANLE 731

Query: 552 DWTKLTVTCLQNVCLDE---HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
              +  +              R +  L   +     +++  +  +T   +  +  + ++ 
Sbjct: 732 MLVEKAIAFEATSYKGLFNFVRYIEQLRKYDIDYGEANIADEQADTVRLMSIHKSKGLEF 791

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
              ++ G + +  ++ ++   ++             +  G++       T    FL +V+
Sbjct: 792 PIVIVAGMSKRFNMQDTTGSIVVHPE----------LGVGVDAVDLEYRTKIPTFLKKVI 841

Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
           Q  + L   E    +    +      +  LI   S+        +   +Q          
Sbjct: 842 QRKVQL---ENLGEELRVLYVALTRAKEKLILIGSISNLEKKLKSFASIQSREQTALPFG 898

Query: 728 FDNLKKRGQCYLDWT 742
             +       ++   
Sbjct: 899 VLSRATSYFDWILPA 913



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 45/161 (27%), Gaps = 22/161 (13%)

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI-IWRHLF 860
                  RGT +H  +       ++         +        E+  L P +   I+    
Sbjct: 1053 TLSGASRGTAYHKFLE-----LLDFGKSYTISQLYAEAAKFCEEGKLKPEMMESIYYKDI 1107

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI---------------HLTGFADRI 905
              +  S L    +  +    +    P  + + +  I                + G  D  
Sbjct: 1108 LGLLESPLGLRFQKAAQSGCLKKEQPFVLGVSADTIYPELLERQEEEEELLIVQGIIDVY 1167

Query: 906  DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
                 G + + DYKT     +E   +  + QL      L+ 
Sbjct: 1168 FEEPDG-IVVVDYKTDRAASREELAERYEKQLRYYGEVLER 1207


>gi|296328157|ref|ZP_06870688.1| conserved hypothetical protein [Fusobacterium nucleatum subsp.
            nucleatum ATCC 23726]
 gi|296154669|gb|EFG95455.1| conserved hypothetical protein [Fusobacterium nucleatum subsp.
            nucleatum ATCC 23726]
          Length = 903

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 53/392 (13%), Positives = 111/392 (28%), Gaps = 49/392 (12%)

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
             N   +   +  L LKT E  I    + F     + + I   SL + +     S ++   
Sbjct: 513  NNNLFTEQQKIKLGLKTNEDEILTQKYRFFQNLLSLNKIDIYSLVDKDNNIDFSAFVYEF 572

Query: 720  LV---LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
            +        +  +  +     Y     +     K       K     +         +  
Sbjct: 573  INKYTALENNMDNLKQYFKAIYSKEKTENFSKDKTFFRAYSKDKSDFKDNILKIGAYDYI 632

Query: 777  QLINDPYAVYARRILKLDFIPHF--KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
            +L  +    +  +I  ++                G + H  + E+ ++          +L
Sbjct: 633  ELKKNETFFFLDKICGIESSDEIVADIGISAKVLGNILHKTLEEIFRENWKNILQSSENL 692

Query: 835  MK--QIIDSHFEKENLPPH----------IDIIWRHLFHKISHSF--LEHEEKIQSSIEK 880
            +    II+ + ++                I+ +           F  + +EE     I +
Sbjct: 693  LISTDIIEKYLKRSIWKEELKIEIFMENYINEVLMPRLVSNIEKFFKVLYEELKGEKILR 752

Query: 881  IFVNIPAK------MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
            I     +K      +  + I + L G AD +         I D+KTG             
Sbjct: 753  IEAEKKSKTQDKAYLKYDEIEVFLNGRADLLIETS-KARYIVDFKTG----------GYK 801

Query: 935  P-QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993
              QL   A                    +       + +      +K+  D+L EK    
Sbjct: 802  REQLEFYAIMFY--GSDNSLPVYSTAYNFW-----DEQEAKNFKFEKHLIDKLPEK-DSQ 853

Query: 994  LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025
              E++      +     ++   + +  +SEYD
Sbjct: 854  FKELLIEFFKNK----YYVLPKKSALKESEYD 881


>gi|300783032|ref|YP_003763323.1| hypothetical protein AMED_1105 [Amycolatopsis mediterranei U32]
 gi|299792546|gb|ADJ42921.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 290

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 47/171 (27%), Gaps = 13/171 (7%)

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
               +    S + +    + P       + +             +  G + HN +  L  
Sbjct: 15  AQPVRLTKVSPARLATFDDCPRRYRLAYLERPTPQRT--GPWAHSTLGAVVHNALRALFD 72

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
               K  P+    +          E          R           E+ E    S + +
Sbjct: 73  LPALKRVPQRAVALVAEFWKDAGFETEEQAARYRARAK-----GWVAEYVEDNDVSHDPV 127

Query: 882 FVNIPAKMAIESIG-----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
            +       + S       + + G  DRID    G + I DYKTG  P  E
Sbjct: 128 GLERWVSAPVSSTPGERPSMIIEGRTDRIDAR-DGSLVIVDYKTGRRPPDE 177


>gi|257784673|ref|YP_003179890.1| UvrD/REP helicase [Atopobium parvulum DSM 20469]
 gi|257473180|gb|ACV51299.1| UvrD/REP helicase [Atopobium parvulum DSM 20469]
          Length = 1165

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 16/157 (10%)

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
                D T  G+ FH +   +++ +   +            +   ++  L   +       
Sbjct: 991  DDGVDPTSLGSAFHELAQIMVETQSKVD------------EQIIDRLCLKNSVPQRAVSR 1038

Query: 860  FHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAIESI-GIHLTGFADRIDL-LKSGFVDIT 916
              +    +   E + ++ + + +    P  + ++S  G ++ G  D +     S    + 
Sbjct: 1039 VKQALELWSNSEIRQEALAHDVVIAESPFTLQVDSEYGNYVEGAIDLLAYNRGSKDALVV 1098

Query: 917  DYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952
            DYKTG          +    Q +  A  L    F+++
Sbjct: 1099 DYKTGDKGLSAAQIYEHHQMQANFYAYVLMQRGFTKV 1135


>gi|229818114|ref|ZP_04448396.1| hypothetical protein BIFANG_03406 [Bifidobacterium angulatum DSM
           20098]
 gi|229784718|gb|EEP20832.1| hypothetical protein BIFANG_03406 [Bifidobacterium angulatum DSM
           20098]
          Length = 1388

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 64/681 (9%), Positives = 159/681 (23%), Gaps = 66/681 (9%)

Query: 51  VPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTA-DLLLSYNLNPPVSNIQRL 109
           VP +     L    I   G  +   P + +L  V      A        +   ++  ++ 
Sbjct: 57  VPNRNLASSLSDMAIRELGALAQARP-VTTLSAVAFRIIAANRSFRKLPMPKLLNGAEQD 115

Query: 110 LELARLILIWRN------------KLPDIIKDLYPESPLSLPISPANA------------ 145
             L +++ +                L          + ++  ++   A            
Sbjct: 116 ALLRQVLAVHLRHAVSGDLCDTCHLLRYYFAQDDWANAVAPTLNAGTASNGGNIGAGSTA 175

Query: 146 --------IWLAKNLADIIDIIETEEKKWEDLHAL-------------KNEKYGMWWLLA 184
                         L D++  ++      E    L               E+  + W LA
Sbjct: 176 AIFENGISASFVSQLRDMLARMDELGVTPEREGDLLEAPRHFPQGDWRDEERLTVQWRLA 235

Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-------HLMKGTKGPIIIAGSTG 237
                  +    +              +                L       +I+     
Sbjct: 236 FALRGEYAHALADTYSGEYRLDASKLLVEGAAVLERPDGSDDGLLADMVPRMLIVDDFQD 295

Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
           +  A  R + T+  H  G  ++   +       +             +       Q  L 
Sbjct: 296 TTLAGLRFIETL--HNRGTAIVLAGNPDESVQTFRGSYP----EYLFDRAQHGDLQSRLI 349

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
           +L      +     R    +      +     +                  +  ++    
Sbjct: 350 ELEKDRRDRDAPDYRTLVATRVSLSITSPERNAPPMAQRPGKMPVCPGAWPVSAVKHTDD 409

Query: 358 DVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINID 414
            +      + REE   +   ++ S  +        A+I  D    R+    L R G+ + 
Sbjct: 410 SLQTAIYRSAREELDDVVWRIKRSHLDRGTEWNDMAVIAHDNATVRQFGERLRRDGVPVR 469

Query: 415 ISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            S+   PL +      L +L+         +    +    +  F           +AL  
Sbjct: 470 YSSVTRPLKSEPFVQGLFALIELAQLREQGLDGTDMSLKNIGAFARSRIAAL-MGSALVT 528

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
              +  + +   ++     +  + +      V    +  +  D+         +      
Sbjct: 529 TGGKPGEGAPARIEPIESAMSSLESLAGLEGVADDPNGHAVADEPTDETAGRAVDGSELA 588

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            +  +          + +D T            +       L  +     L    +   +
Sbjct: 589 RIVREWEALKESERRNGADMTIQIADVADGTGEERPAAFSVL-SQYAMLALDGKAAPCAD 647

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
               I +       +         +    E    L          L +D   +    + +
Sbjct: 648 MLGVIGSVVGGGPHLKAFQRVFRLIDRVAEGMRALPSKEPQFVLALAWDVTGVAEHWQRM 707

Query: 654 WPKNTAKNPFLSRVMQSDLNL 674
              NT +    +  + + + L
Sbjct: 708 ALMNTPEGRAANDRLDAAMRL 728



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 892  ESIGIHLTGFADRID--LLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL--- 944
            E + + L+G  DR +   L+ G   + + DYKTG   +        D QL      L   
Sbjct: 1180 EDLTVRLSGRIDRKEMRRLRDGSQTIRLIDYKTGRKRQLAEIFN--DLQLVCYQLGLMFP 1237

Query: 945  KAGSFSQIDCRKVANLFYIR 964
            + G   +      + LFY++
Sbjct: 1238 EHGRAGERPHIAQSGLFYVQ 1257


>gi|78045388|ref|YP_361638.1| UvrD/Rep-family ATP-dependent DNA helicase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78033892|emb|CAJ19891.1| UvrD/Rep-family ATP-dependent DNA helicase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
          Length = 1103

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 86/882 (9%), Positives = 207/882 (23%), Gaps = 118/882 (13%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TL+    +   N    A + +   + RA +EL           +  +  + +      E
Sbjct: 227 ATLLMRIEHLLANGAKPAELLVLTFSNRAARELVDRLAANGVPDAHEM-WVGTFHAFGLE 285

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               +    + L P      ++ ++A L            +      PL +     + + 
Sbjct: 286 FLRKN-HERFGLRPGFGVADKMAQIALL------------EPHIYGLPLRVFNPLGDPLP 332

Query: 148 LAKNLADIIDIIETEEKK---WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN- 203
                   +   + E      +  +      +     L     L +  + +   L     
Sbjct: 333 WLDQAVKTMQRAKDELLDAVAFTRVVEAGAVQADAERLALDRDLALLYRTYEALLRANGG 392

Query: 204 ASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                       Q             G    +++        A+A L+  +A   +   V
Sbjct: 393 LVDFGDLILLPAQALRANRAEFAPSIGRFRHVLVDEYQDVNRASAELVKAIAAQADSLWV 452

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
           +   D       +   + ++    + +      PQ+   +L +      E V+ + +   
Sbjct: 453 V--GDPRQAIYRFRGASMRNIVRFADDF-----PQHREFRLNENWRSFEEIVRVVEHTGR 505

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
           +      V+      P             +   +      +A  E  +         +  
Sbjct: 506 DDNPLQGVL------PLGGVAPIRGPGGVRPTLVSCEDESIAFGELASR--------VLG 551

Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             +     ++  ++    +        L   GI +       +        L +LL    
Sbjct: 552 LQAEGTAFREQVILANRHDTCDAAAAALVAAGIPVLHLGD--VFQRPEVKDLLALLQLFV 609

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                 A+  + + P      P+  +                                  
Sbjct: 610 DR-SGSALVRIAQLPGLALPAPDVDVL-----------------------------LDHL 639

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
           +        W      +        +         L +   +         +   T+   
Sbjct: 640 RHTRPAPLSWLQAPPADLSPAGAQALQRWRDTFGGLTS--RDSPWDVICSLLFQRTRWLA 697

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                   D       L   +    L       +          +     +    D    
Sbjct: 698 DYAN--GSDMQAVTRRLALWQIIYYLRVPDGGRVYQTVGTFLTRLRRRLRLADDRDLRIP 755

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
            P+ E    + ++   +S+ L F+ + L  ++   + ++         + QS   +   +
Sbjct: 756 PPEAELLDAVAVMTIHQSKGLEFEAVHLMDVDARHFERSDDAPWLPEVLTQSAGGV---D 812

Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
           +   +AA+   +A        T    +       +  +QR   L            G+  
Sbjct: 813 EARSEAANRLYVALSRARSSLTLYEEKGYFKAARAPAVQRAAHLLNCVVGTVAYAVGRHA 872

Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
              T                      A        E       P   Y   + +L     
Sbjct: 873 AALTAL--------------------APQVPVDLREFVTYRTCPRRYYYDVMKQLSP--- 909

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
                    R      ++ EL        +  +N +  ++     E E   PH+      
Sbjct: 910 -AAGLHPAARIEA--AVMRELFVPAGGDVSAPVNDVAVELAMLTEEYEPARPHLLAYAVQ 966

Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
           L                S   +  +  P  +  + + + +T 
Sbjct: 967 LLDAGRAW---------SGTVRAAMASPIDVVCDGLPVRVTA 999


>gi|296132525|ref|YP_003639772.1| recombination helicase AddA [Thermincola sp. JR]
 gi|296031103|gb|ADG81871.1| recombination helicase AddA [Thermincola potens JR]
          Length = 1279

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 111/1052 (10%), Positives = 228/1052 (21%), Gaps = 204/1052 (19%)

Query: 95   LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
                       + R L+  +   +   +  DI + L   +      +      L+    D
Sbjct: 261  DLLAAARSWDGLHRALQDLQFGKLKACRNKDIDETLKERTKKLREEAKKTIASLS---RD 317

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            +      E            E+   +    A  ++   + + E             +   
Sbjct: 318  LFARPLGEHV-------ADLERTAPYVRTVAGLVRAFMERYREMKTARGLVDFSDLEHYC 370

Query: 215  MRAEAEHLMKGT--------------KGPIIIAGSTGSIPATARLMSTVANHPNGAI--- 257
            ++   +                       +++            ++  V+     A    
Sbjct: 371  LKVLLDEKSTPQKPMPSPVALELREYFAEVLVDEYQDINAVQETILHLVSRQGEDAERPN 430

Query: 258  VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE--------- 308
            +    D       +                 +         L      +RE         
Sbjct: 431  LFMVGDVKQSIYRFRLAEPSLFMSKYLAYPRTAGEACRAVDLTQNFRSRREVIDAVNYIF 490

Query: 309  -------------------DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                                   L          +    +  L     D+      EN+ 
Sbjct: 491  RQIMTPRLGELIYDNKAELHCGALYADVPGGGPPAGGPVELHLLEKKVDIGAPGGEENEQ 550

Query: 350  PNIQKCFSDVA-----LIEADNEREEAISIAIALRMSLD--------------------- 383
            P+      D +       E D  + EA  +A  ++  +                      
Sbjct: 551  PDAIDAGDDASNSDDDPAELDATQREARLVARRIKELVSGTAERPGPQLQVFDKTTGGYH 610

Query: 384  --ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                +    L+ A R  A     EL   GI +               I+ SLL  I    
Sbjct: 611  PVRYRDIVILMRATRGAANIFVEELRGAGIPVYADLDTGYFAATEIEIVMSLLKIIDNPR 670

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD-------------L 488
              + +A +++ P+      E  L R               +                  L
Sbjct: 671  QDIPLAAVLRSPIVGLTAEELALVRLCAPSRNSRFYDAVQAAAADGPVPEPVKTRLQAFL 730

Query: 489  KSLVLDRIATQKNNTHVPHWQ-------------SRLSEEDKELAVLLVDHILQ------ 529
             SL   R   ++ +     W+                  + +     L D   Q      
Sbjct: 731  TSLEQWRTMARQGSLAGLVWRLYNETGYYTYVGGMPGGMQRQANLRALYDRARQYEATAY 790

Query: 530  --------CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                     I        +  +        D  ++               +  L  +   
Sbjct: 791  RGLFRFLRFIERFQDLGNDLGTARALGENEDVVRIMSIHKSKGLEFPVVIVAGLGKQFNT 850

Query: 582  KTLSSLFSKIIETGSCIKAN----AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
              L        E G  +        + +  ++   I  +     + +   +  +      
Sbjct: 851  VDLRQNVVLHKELGIGLPVVEPELPLTYPSLVQSAIRKKNQMEMLAEEMRVLYVALT--- 907

Query: 638  LLNFDTLILGGLNEGVWPKNTA-------KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                + LIL G    +             K   L  V  +             A H    
Sbjct: 908  -RAREKLILIGSAAELEKCAAQWCQNVLHKEWPLPDVSLAGAKSFLDWICPAVARHREGQ 966

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            A                      R L  + V    +      +    Y +   K+     
Sbjct: 967  AIR----DLAGCDEAPAGEPAEDRSLWSVRVWRPGECLVPQPEEPADYEELLEKVRKMEP 1022

Query: 751  QP-HYKRPKPFPPLEAQPRTYSFSE------IKQLINDPYA----------VYARRILKL 793
                  + K      +    ++ +           I + +A            A  +  L
Sbjct: 1023 VDITAGQTKVISEALSWKYPFALTAGKPSKAAVTEIKNSFAGMEMEETHGSHPAGELAVL 1082

Query: 794  DFIPHFKK-------DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
                  +             +RG+  H ++  +  +           L +         E
Sbjct: 1083 RKFNFIRPRFYQNQKGLTAAERGSAVHLVMQHVDLRGDLTEQGIAGQLARMQARELLTAE 1142

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIE------------S 893
                      + +  K    F   E   +    ++I+  +P  + +              
Sbjct: 1143 --------QAKAINPKDIAGFFNSEIGRRMLRADEIYRELPFTVTLPAEVIYSDLPAGCG 1194

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET----------AQKLIDPQLSLEAAA 943
              + + G  D +     G   + DYKT   P ++                  QL++ A A
Sbjct: 1195 EAVLVQGVIDCLLKEGDG-FVLLDYKTDRLPVEKNSLPAGDVLQVLADKYRGQLNIYAMA 1253

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975
            ++         RK     YI L    K   I 
Sbjct: 1254 VERIL------RKPVQAKYIYLFAVGKTVEIV 1279


>gi|15642318|ref|NP_231951.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O1 biovar El
            Tor str. N16961]
 gi|121586166|ref|ZP_01675957.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 2740-80]
 gi|153817895|ref|ZP_01970562.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae NCTC 8457]
 gi|153821518|ref|ZP_01974185.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae B33]
 gi|227082444|ref|YP_002810995.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae M66-2]
 gi|229507609|ref|ZP_04397114.1| exodeoxyribonuclease V beta chain [Vibrio cholerae BX 330286]
 gi|229512195|ref|ZP_04401674.1| exodeoxyribonuclease V beta chain [Vibrio cholerae B33]
 gi|229519331|ref|ZP_04408774.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC9]
 gi|229607115|ref|YP_002877763.1| exodeoxyribonuclease V beta chain [Vibrio cholerae MJ-1236]
 gi|254849444|ref|ZP_05238794.1| exodeoxyribonuclease V [Vibrio cholerae MO10]
 gi|255746995|ref|ZP_05420940.1| exodeoxyribonuclease V beta chain [Vibrio cholera CIRS 101]
 gi|262161463|ref|ZP_06030573.1| exodeoxyribonuclease V beta chain [Vibrio cholerae INDRE 91/1]
 gi|298500312|ref|ZP_07010117.1| exodeoxyribonuclease V, beta subunit [Vibrio cholerae MAK 757]
 gi|9656886|gb|AAF95464.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O1 biovar El
            Tor str. N16961]
 gi|121549578|gb|EAX59602.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 2740-80]
 gi|126511603|gb|EAZ74197.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae NCTC 8457]
 gi|126521011|gb|EAZ78234.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae B33]
 gi|227010332|gb|ACP06544.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae M66-2]
 gi|229344020|gb|EEO08995.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC9]
 gi|229352160|gb|EEO17101.1| exodeoxyribonuclease V beta chain [Vibrio cholerae B33]
 gi|229355114|gb|EEO20035.1| exodeoxyribonuclease V beta chain [Vibrio cholerae BX 330286]
 gi|229369770|gb|ACQ60193.1| exodeoxyribonuclease V beta chain [Vibrio cholerae MJ-1236]
 gi|254845149|gb|EET23563.1| exodeoxyribonuclease V [Vibrio cholerae MO10]
 gi|255735397|gb|EET90797.1| exodeoxyribonuclease V beta chain [Vibrio cholera CIRS 101]
 gi|262028774|gb|EEY47428.1| exodeoxyribonuclease V beta chain [Vibrio cholerae INDRE 91/1]
 gi|297541005|gb|EFH77059.1| exodeoxyribonuclease V, beta subunit [Vibrio cholerae MAK 757]
          Length = 1208

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 98/915 (10%), Positives = 216/915 (23%), Gaps = 120/915 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   V   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLAESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDAESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F            +  +E  I  +    L++   L   D  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF----------LLQDGQEGGIADLQQALLKQCENL--PDVV 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                 +         +LD                      +    +     +DP      
Sbjct: 872  QCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPL 931

Query: 789  RILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINH 833
              +    +   ++                      GT  H++  E+  ++   + P    
Sbjct: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKI 991

Query: 834  LMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV 883
            +++ +     E E LP    ++                +I  +    E +    IE +  
Sbjct: 992  ILELMESEQIESEWLPVLQQLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 884  ---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKT---GDNPKK 926
                     + P       +G H     L GF D +   + G   + D+K+   GD+P  
Sbjct: 1052 PTLNRITQRHDPLSAHAGDLGFHAVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 927  --------ETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLK---QKFKI 971
                      A+   D Q  + A AL     S++      +    +FY+ L+    +   
Sbjct: 1111 YHPQRLGSAMAEHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRGMDGRGDQ 1170

Query: 972  DCITNDKKKYSADEL 986
                        DEL
Sbjct: 1171 GVFHTKPSLALLDEL 1185


>gi|260550543|ref|ZP_05824753.1| ATP-dependent exoDNAse beta subunit [Acinetobacter sp. RUH2624]
 gi|260406458|gb|EEW99940.1| ATP-dependent exoDNAse beta subunit [Acinetobacter sp. RUH2624]
          Length = 1232

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 93/904 (10%), Positives = 223/904 (24%), Gaps = 197/904 (21%)

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHL-------MKGTKGPIIIAGSTGSIPAT 242
               K   + L     ++       L  A            ++     I++     +    
Sbjct: 365  EVKKRLPQVLQNKGETTFSQQIRTLSEALKGEQGQRFAVFVQARYPLILVDEFQDTNQDQ 424

Query: 243  ARLMSTVANHPNGA---IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
              +++++  HP       ++   D       +    +  T + +     + H      KL
Sbjct: 425  DDMLASIWRHPERYQKGCMIMVGDRKQAIYGFRG-GDMLTFLNAYKDIQAKH--GREYKL 481

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            +       +    L  V + ++ R +   +               +             +
Sbjct: 482  IHNHRSVAD----LVEVVDALFQRQIDFGEQVQYDPIRAGTRPHPVLIDQNQPNPHP--L 535

Query: 360  ALIEADNEREEAISIAIALRMSLDENK-----------------KKSALITADRNLARRV 402
              +   ++  EA  +A  +R  L+++                     A+++ + +   +V
Sbjct: 536  RWLMLKDKETEAQQVAWKIRDLLNQSHAGQLYFQKDAQTQILNEDDIAVLSRNHDGLDKV 595

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
            + EL R GI ++  +   +     +  + +LL AI    D                    
Sbjct: 596  QFELERLGIRVNRPSKRSVFDCTIAQDVGALLTAILHPYD-------------------- 635

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                     E    R   +    MDLK L+                              
Sbjct: 636  ---------EAKVKRALISRLFAMDLKQLLQ----------------------------- 657

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLS-ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             ++   + ++  +T              +  W +     +    L   +   N       
Sbjct: 658  -LEQTAEGLSQFMTGFDAIRELWSAQGFLVAWQQCLNQFVIWKNLVAVQSKDNERVVVNL 716

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLI-DGETVKPKIEKSSTLFILGTLESRLLN 640
            + L+ + S+  E     +     ++  +   +     ++ ++   + + ++   +S+ L 
Sbjct: 717  RHLTEILSQHSEKYQGAQNLYHWYLKQLQSPLDREWELERRLSSEAGVQLMTIHQSKGLE 776

Query: 641  FDTLILGGLNEGVWPKNTAKNP----------------------FLSRVMQSDLNLKTAE 678
            F  + L G ++     N   N                         + + +++L      
Sbjct: 777  FKIVFLLGADKPFRENNKTLNFSTQDITVPESAQTLTQRVVAIADKTYLNETELKQHEER 836

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                Q    +       H +   +L ++      S                   +     
Sbjct: 837  ALAEQNRLWYVALTRASHRV--YALLQDTDGKSVSGLAFWKNRAEPFQHRCCTDEIILEQ 894

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA------RRILK 792
                R L+        +               SFS + Q +                +L 
Sbjct: 895  PPAARHLNQNINIIEIQAQHFPDQRFYSRGKTSFSYLAQHLRHKVGTDLLASQSHEAVLA 954

Query: 793  LDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINHLMKQ 837
             D +           +               G   H I   +  +  ++   EI    K 
Sbjct: 955  EDELDQVISVEAPAAQPISWIKSNFPRGTLAGNFLHEIFEHIDFQCSDEWVSEIRRRFKN 1014

Query: 838  IIDSHFEKENL-----PPHIDIIWRHLFHKISHSFLE------HEEKIQSSIEKIF--VN 884
               S ++   +      P        L+H ++    E      ++    + ++       
Sbjct: 1015 DYSSLWQDLLIKYQESFPEEQEAEYSLYHAVAEWLQEILSTPLYQGFRLNQLQPEHYLSE 1074

Query: 885  IPAKMAIESIGIH--------------------------LTGFADRIDLLKSGFVDITDY 918
             P  +A+    +                           L G  D +         I DY
Sbjct: 1075 CPFYLALSDRVLAMKRIHQLFAEYGMEMPELLEARSARYLNGSIDLVYFDG-QRYHIADY 1133

Query: 919  KTG---------DNPKKETAQKLID--PQLSLEAAALKAGSFSQID----CRKVANLFYI 963
            K+                 +  L     Q  L   AL      ++      + +    Y+
Sbjct: 1134 KSNYLGENLADYSVESIAQSMSLASYWLQAGLYLVALHRYLKVKMQNYDIEQHLGGATYL 1193

Query: 964  RLKQ 967
             L+ 
Sbjct: 1194 YLRG 1197


>gi|167462209|ref|ZP_02327298.1| ATP-dependent deoxyribonuclease (subunit A) [Paenibacillus larvae
            subsp. larvae BRL-230010]
          Length = 1391

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 76/746 (10%), Positives = 176/746 (23%), Gaps = 122/746 (16%)

Query: 94   LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
                   P ++ +   LEL   +L       +     +  +             L K L 
Sbjct: 319  EAPGGPLPYLATLDSDLELINTLLEAAENSWEAAYRAFQTAVFGKLKPCRGD-DLDKELQ 377

Query: 154  DIIDIIETEEKKW-----EDLHALKNEKYGMWWLLAA-------DFLKIASKYWTERLVE 201
            + +     E K       E++     E+Y       A         +   ++ + +   +
Sbjct: 378  EAVKQARNEVKDAVFRIKEEIFTRTQEEYKDELKRTAPVLHHLVRLVIDFAERYQQSKED 437

Query: 202  LNASSPV--GYQIALMRAE------------AEHLMKGTKGPIIIAGSTGSIPATARLMS 247
                      +    +               A    +     +++     +      ++S
Sbjct: 438  KGLVDFADLEHYCLAILRSEESTPERMIPSSAALDYQEQFAEVLLDEYQDTNRVQESIVS 497

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKST---------------------NITSSNT 286
             ++    G   +   D       +                                 S  
Sbjct: 498  LISKEAPGNRFM-VGDVKQSIYRFRLAEPGLFLSKYKSYTTSGEGEGKRVDLARNFRSRR 556

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV----------ISKSFLPPDT 336
                   +   +++     +     R   V+   Y  +             S       T
Sbjct: 557  QVVDAVNFLFRQIMQESVGEIAYDIRAELVTGANYPETGQDLSVEMMLVDRSAEEQDEFT 616

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----------- 385
            +     D  E ++ +      +    E +  + EA +IA+ +R  L              
Sbjct: 617  AKGFGEDEAEPEMASEPAASLEFEAAELETAQLEARAIALKIRRLLGTEEGVRPFQVFDK 676

Query: 386  ---------KKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                      +   ++         V   EL + GI           +     I+ SLL 
Sbjct: 677  RTGELRPATFRDIVILLRATQQWAPVLMEELKQQGIPAYADLNTGYFSATEVEIMLSLLK 736

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
             I      +  A +++ P+ +    +    R               +             
Sbjct: 737  TIDNPAQDIPFAAVLRSPVVQLNADDLAQIRIAGPGLSFYDAAYLYANGQT--------- 787

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                 +    P        E ++  +L +D +            +  S     +++D   
Sbjct: 788  AEGALSQAIQPAVSWSFKPEVQQKLLLFLDRL-----------ESWRSEARQGALADLIW 836

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                                                  +   +         +     D 
Sbjct: 837  NIYRETGFYDYVGGMPGGLQRQANLRALYDRARQYESTSLRGLFRFLRFVERMKETGGDL 896

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF-----------L 664
             T +   E+   + I+   +S+ L F  + + GL +    ++T+ +             L
Sbjct: 897  GTARSLGEQEDVVRIMSIHKSKGLEFPVVFVAGLAKIFNQRDTSGSFLIHKELGFGPKYL 956

Query: 665  SRVMQSDLNLKTA---------EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
               ++                 E    +    +      R  ++     ++    ++S  
Sbjct: 957  DPDLRVSYPTLPMLAIRRRMKLELLAEEMRVLYVALTRAREKLFLLGTVKSADKLLSS-- 1014

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDW 741
              R L LG     D+   R + YLDW
Sbjct: 1015 WSRYLGLGTWSLPDDEVARARSYLDW 1040



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 23/171 (13%)

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
            LK       +K P   +RG++ H ++  +           +   + +++           
Sbjct: 1206 LKKRPRFMEEKKPTPAERGSVVHAVMQNMPL-HETPTLSSVRQTLDKMLRLELLTTAQCE 1264

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-------------IH 897
             +         +I   F     K     + +   +P  + + +               + 
Sbjct: 1265 TVPE------EEILQFFQTSVGKRMVKADWVKREVPFSLGLPAPEVYPDIGYNGARDIVL 1318

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDN--PKKETAQKLIDPQLSLEAAALKA 946
            + G  D +   + G + + DYKT        E  +     QL L A A++ 
Sbjct: 1319 IQGIIDCLFEDEEG-LVMLDYKTDAVWQNDLEKLKDRYRLQLQLYARAVEE 1368


>gi|147674146|ref|YP_001217828.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395]
 gi|262168313|ref|ZP_06036010.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC27]
 gi|146316029|gb|ABQ20568.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395]
 gi|227014216|gb|ACP10426.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395]
 gi|262023205|gb|EEY41909.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC27]
          Length = 1208

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 91/893 (10%), Positives = 206/893 (23%), Gaps = 117/893 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRSLYPVAMIDEFQDTDPLQYSIFSRLYLDHPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGTDKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAAAFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   +   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAIASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLTESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDTESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F            +  +E  I  +    L++   L   D  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF----------LLQDGQEGGIADLQQALLKQCENL--PDVV 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                 +         +LD                      +    +     +DP      
Sbjct: 872  QCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPL 931

Query: 789  RILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINH 833
              +    +   ++                      GT  H++  E+  ++   + P    
Sbjct: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKI 991

Query: 834  LMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV 883
            ++  +     E E LP    ++                +I  +    E +    IE +  
Sbjct: 992  ILDLMESEQIESEWLPVLQHLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 884  ---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTG-------- 921
                     + P       +G H     L GF D +   + G   + D+K+         
Sbjct: 1052 PTLNRITQRHDPLSAQAGDLGFHAVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 922  ---DNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                      A    D Q  + A AL     S++      +    +FY+ L+ 
Sbjct: 1111 YHPQRLSGAMADHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRG 1163


>gi|302342252|ref|YP_003806781.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
 gi|301638865|gb|ADK84187.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
          Length = 741

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/617 (9%), Positives = 150/617 (24%), Gaps = 61/617 (9%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TLV    +     +    + +   T+RA         E+  +   + P   ++G     
Sbjct: 39  RTLVHRVAHVVELGVDPREILLLTFTRRAA-------AEMLARARQLNPACAAVGGGTFH 91

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                LL  Y     +     +++ A    + R  + ++      +     P +    I 
Sbjct: 92  SLCNRLLRRYAARAGLMPNFTIIDPADAEHLVRGCIDELGLKGGKDERFPKPRTVFGLIS 151

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            ++NL   +  +                         +  ++  +  + +     N    
Sbjct: 152 ASRNLELSLAELIQTR--------------EPHLWPISKEIERIALAYAQAKQRQNQVDY 197

Query: 208 VGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                       ++       +     +++     +    ARL+  +       +V+   
Sbjct: 198 DDLLFMAEALLRDNPDIQDDQRRRWRHVLVDEYQDTNAVQARLLELICGPGQELMVV--G 255

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       +      +                     +  L+      + + +++N +  
Sbjct: 256 DDAQSIYRFRGARIDNIFEFPERFAG---------AAVVKLERNYRSTQPILDLTNAIIE 306

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            +       L  +  +     +   +                 +ER ++  +   ++  L
Sbjct: 307 GAGQRFDKRLFTELLEGPKPRLERPR-----------------DERGQSRLVRERIQKLL 349

Query: 383 DENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
            +  +    A++      +  ++ ELT   +      G+      H   + + L  I   
Sbjct: 350 ADGARPEDIAVLFRAGRDSFDLERELTAEHLAYVKYGGLKFLEASHIKDVLAHLRVIANP 409

Query: 441 NDFMAIATLV-----KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            DF++    +       P             A  A     LR          ++ L    
Sbjct: 410 LDFVSWQRALMLLPGVGPTTAQQIVAHLALAAGPADFGPRLRACPQGKRSAPVRQLAELM 469

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                             E  +       +   + +  L        +      +     
Sbjct: 470 DELSDPAAPPLDKVEAALEYYEPFCREQYEDYPRRLRDLEELPGLARAFGSLEDMLAELV 529

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
           L         +   R   +     +G     +F      G    + +++  D +      
Sbjct: 530 LDPPAAHAEEMGGGRITLSTVHSAKGMEWPHVFVIWATDGRLPSSASLDDPDGLEEERRL 589

Query: 616 ETVKPKIEKSSTLFILG 632
             V         L +  
Sbjct: 590 LYVACTRAAKGLLLVAP 606


>gi|322516094|ref|ZP_08069031.1| exonuclease RexA [Streptococcus vestibularis ATCC 49124]
 gi|322125509|gb|EFX96855.1| exonuclease RexA [Streptococcus vestibularis ATCC 49124]
          Length = 1217

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/601 (9%), Positives = 146/601 (24%), Gaps = 45/601 (7%)

Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGP 229
           +       L   F+   S  + +  ++ NA          +R   E+       +     
Sbjct: 355 DDILPLLELLQSFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEENPEVAASYRDRYHE 414

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
           +++     +     R++  ++   NG       D       +     +  N         
Sbjct: 415 VMVDEYQDNSHTQERMLELLS---NGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFL-- 469

Query: 290 THPQYS--------LAKLLDFLDIKREDVKRL---------GNVSNEMYGRSMVISKSFL 332
            +P                + LD        L          + ++ +   S    +   
Sbjct: 470 ENPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSEKQREPHP 529

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSA 390
              T  +       N  P+ +     ++         E   +   +    ++  +     
Sbjct: 530 ENQTEVLIYNSDEANVTPDEESADQPIS-------SGEISLVIKEIIKLHEQGVRFEDIT 582

Query: 391 LITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           L+   RN    +       GI +           +L   I+   L AI    +  A+  L
Sbjct: 583 LLAPTRNTYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALVAL 642

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
           ++ P+  F   +     A  A +         ++    L   V+ +    K    +    
Sbjct: 643 LRSPMFNFNEDDL-ARIAVQADKGQFYDKLLAAHTKSGLHPEVVTQGLETKLTLLIETLS 701

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
                        L+  I           +   +     ++           +       
Sbjct: 702 DWRDYSKWHSLYDLIWKIYDDRFYYDYVGSLPRAEQRQANLYALALRANAYEKTGFKGLS 761

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIE--TGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
           R +  +             + ++     S +  +  + ++     +     K        
Sbjct: 762 RFIGMIDKIISSGNDLEEVADLVPKNAVSLMTIHKSKGLEFKYVFVLQMNRKFIGHSKDG 821

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
           L     + +R        L  L + +       N  L  +   +   +     I +    
Sbjct: 822 LS-GKYIINREKGLGIKYLADLKDQINTNLPKLNVVLETLTFQENRREERRASISEEMRL 880

Query: 688 FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
             +A           + + +   +  ++   +            + +   Y DW   LD 
Sbjct: 881 LYVAMTRAEKKL-YLVGKGSKEKLTQQFGTDVENNRLPVAL---RDQIATYQDWVMALDT 936

Query: 748 T 748
            
Sbjct: 937 A 937



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 17/149 (11%)

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                  G+  H ++  LI      +       + Q +      + +   +         K
Sbjct: 1057 VTGAAVGSATHELMQRLIL-----SDTVTLQDLTQALSRVSADDQVKARVQ------LEK 1105

Query: 863  ISHSFLEHEEKI-QSSIEKIFVNIPAKMAIESI----GIHLTGFADRIDLLKSGFVDITD 917
            +   F     K+  ++  K+    P  M  E         + G  D   LL+   + + D
Sbjct: 1106 LLGFFDTELGKLILANRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLED-RIVLFD 1164

Query: 918  YKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            YKT    +    ++    Q+SL A AL  
Sbjct: 1165 YKTDHFTQPGELKERYKGQMSLYAKALSQ 1193


>gi|261211432|ref|ZP_05925720.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC341]
 gi|260839387|gb|EEX66013.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC341]
          Length = 1208

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 90/893 (10%), Positives = 215/893 (24%), Gaps = 117/893 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDHPQCGLLMIGDPKQAIY 421

Query: 270  IWNTIT-------------EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
             +                   +      ++         +        I  +D+      
Sbjct: 422  AFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSFATHPFIYSDDIPFQPVA 481

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENK------IPNIQKCFSDVALIEADNEREE 370
            ++    +     +  + P  +     D+ + +          + C + +  I   +    
Sbjct: 482  ASPGADKRHWTQEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   +   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAIASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLAESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E     +E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDVESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGISP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N          +A  F            +  +E  I  +    L++   L   D  
Sbjct: 824  LRNGNSSQEPTSAHCSAMGF----------LLQDGQEGGIADLQQALLKQCESL--PDVA 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                 +    +    +LD                      +    +     +DP   +  
Sbjct: 872  QCPPPKRFEQVYQPPQLDERELTARELSQAIDRRWRITSYSGLVMQSSHARHDPLQEFPL 931

Query: 789  RILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINH 833
              +    +   ++                      GT  H++  E+  ++   + P    
Sbjct: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKI 991

Query: 834  LMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV 883
            ++  +     E E LP    ++                +I  +    E +    IE +  
Sbjct: 992  ILDLMESEQIEAEWLPVLQQLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 884  ---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
                     + P       +G H     L GF D +   + G   + D+K+        A
Sbjct: 1052 PNLNRITQRHDPLSAHAGDLGFHSVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 930  QKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                           D Q  + A AL     S++           +FY+ L+ 
Sbjct: 1111 YHPQRLGSAMADHRYDLQYQIYALALHRFLRSRLANYDYELHFGGVFYLFLRG 1163


>gi|113954302|ref|YP_730266.1| exodeoxyribonuclease V subunit beta [Synechococcus sp. CC9311]
 gi|113881653|gb|ABI46611.1| exodeoxyribonuclease V, beta subunit [Synechococcus sp. CC9311]
          Length = 1212

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 86/878 (9%), Positives = 206/878 (23%), Gaps = 107/878 (12%)

Query: 193  KYWTERLVELNASSPVGYQIAL----MRAEAEHLMKG---TKGPIIIAGSTGSIPATARL 245
            +    R  +    S  G   AL      AE +  +          +I     + P   RL
Sbjct: 365  QTLAARRAQQGVISFSGLLDALDPQATDAEPKRWLVPIQRRYRVALIDEFQDTDPLQWRL 424

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            +      PN  ++L   D       +    + +T   +              +    L  
Sbjct: 425  LQACFATPN-HLLLMVGDPKQAIYRFRG-GDLNTYKQARQQADQIDNLLDNRRTTPSLME 482

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                    G   +++    +    + LP +  D      L +   +          +E+ 
Sbjct: 483  AMNQWMAPGLKRSKLEVPRVTPCATALPLELPDGEQPLQLIDLQADDSDSPPTRTALEST 542

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
                 A      L            ++ +    A  V+ +L + G+   + +   + +T 
Sbjct: 543  IPPLVACQALHLLDSDPSLTPSDLCVLVSRHRQAEAVREQLAQRGLPSRLVSPGDVLSTT 602

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
             ++ L  LL+A+    D                     L R   +  +          + 
Sbjct: 603  GAAELQHLLDALTTPADG------------------GRLRRLACSALMQWTSHQLQDAET 644

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
                  +  ++   +++         LS+  +   +  +    + +  +           
Sbjct: 645  NGDLDRLAGQLRNLQDDLPFLGLLGCLSQLLEGRMLADLSSRGRLLGDIQQCARLVQDAM 704

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
                +   +       Q +   E          +  ++  ++ +     G         +
Sbjct: 705  HRQGLDLGSAADWLRRQRLQPIEPTPDNRQPHSDLAESAVAVVTVHRSKGLQYPVVICPY 764

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            +           +               L     +         ++            L+
Sbjct: 765  LWQAPAD-GKGPLWRNPPNDPEGTWQVALNPHWGHGHKAAERNQDDSAAEAERLAYVALT 823

Query: 666  RVMQS--DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
            R  +      +  A +     A+  +  +     + +R L          R   R+  L 
Sbjct: 824  RAERHLVVFWVAAAGQDANPLANWVKELSMRDKPLASRHLPPETTTLPFWRPAPRIETLQ 883

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
             +D       R      ++  +             P    E +                 
Sbjct: 884  LSDVPQRTLDRSWGRSSYSAWISTQNGHHKPAPADPRNLEEGRDIDAVADTEAPESP--- 940

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
               A    +   +  F K P     G   H I+ ++  +      P    + ++I  +  
Sbjct: 941  ---ANTADQNGPLADFPKGPGA---GDCLHRILEQVSFQGPADQAPNQAVVAEEIGRAGI 994

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-------- 895
            + E     I  +   +        L+  +    S  +    +   + +   G        
Sbjct: 995  DLEYCDAVITALN-TVLKAPLGGPLKDLKLSDLSAGRRLHELSFDLPVAQRGKPVNSAGL 1053

Query: 896  ------------------------IH----LTGFADRIDLLKSG----FVDITDYKTG-- 921
                                    I     LTG  D +             + D+K+   
Sbjct: 1054 AHAFEADSDHRFGQHYAQSLRQLDIRSRGFLTGSIDLVFTDGENPATARWWVADWKSNWI 1113

Query: 922  -------------------DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV----A 958
                                  +++        Q  L   AL      ++D         
Sbjct: 1114 GERDDSGRGVACGPRHYSQAAMEEQMLSHHYPLQAHLYLLALDRYLRWRLDGYDPERHLG 1173

Query: 959  NLFYIRLKQKFKIDCITNDKKKYSADEL--SEKSLKNL 994
               Y+ L+            +      +   ++ L+ L
Sbjct: 1174 GYAYVFLRGINPEGGSGVVIEPAPLKRIRRLDQWLEGL 1211



 Score = 39.5 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 84/341 (24%), Gaps = 32/341 (9%)

Query: 12  APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
            P+       IP L+    +     DP   L  + + + V   R  + +R +  +     
Sbjct: 533 PPTRTALESTIPPLVACQALHLLDSDPS--LTPSDLCVLVSRHRQAEAVREQLAQRGLPS 590

Query: 72  STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
             + P     GDV+     A+L    +     ++  RL  LA                 +
Sbjct: 591 RLVSP-----GDVLSTTGAAELQHLLDALTTPADGGRLRRLAC-----------SALMQW 634

Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
               L    +  +   LA  L ++ D +         L  L   +           L   
Sbjct: 635 TSHQLQDAETNGDLDRLAGQLRNLQDDLPFLGL-LGCLSQLLEGRMLADLSSRGRLLGDI 693

Query: 192 SK--YWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            +     +  +             L R   + +               S  A + +    
Sbjct: 694 QQCARLVQDAMHRQGLDLGSAADWLRRQRLQPIEPTPDNR-----QPHSDLAESAVAVVT 748

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
            +   G      +  ++  A  +       N  +               L        + 
Sbjct: 749 VHRSKGLQYPVVICPYLWQAPADGKGPLWRNPPNDPEGTWQ------VALNPHWGHGHKA 802

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
            +R  + S     R   ++ +               ++  P
Sbjct: 803 AERNQDDSAAEAERLAYVALTRAERHLVVFWVAAAGQDANP 843


>gi|229524317|ref|ZP_04413722.1| exodeoxyribonuclease V beta chain [Vibrio cholerae bv. albensis
            VL426]
 gi|229337898|gb|EEO02915.1| exodeoxyribonuclease V beta chain [Vibrio cholerae bv. albensis
            VL426]
          Length = 1208

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 91/893 (10%), Positives = 206/893 (23%), Gaps = 117/893 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLGYPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKADYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   +   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAIASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLTESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDTESATTWVDLTGNEDALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F            +  +E  I  +    L++   L   D  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF----------LLQDGQEGGIEDLRQALLKQCENL--PDVA 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                 +         +LD                      +    +     +DP      
Sbjct: 872  QCAPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPL 931

Query: 789  RILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINH 833
              +    +   ++                      GT  H++  E+  ++   + P    
Sbjct: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKI 991

Query: 834  LMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV 883
            ++  +     E E LP    ++                +I  +    E +    IE +  
Sbjct: 992  ILDLMESEQIESEWLPVLQQLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 884  ---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
                     + P       +G H     L GF D +   + G   + D+K+        A
Sbjct: 1052 PTLNRITQRHDPLSAHAGDLGFHAVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 930  QKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                           D Q  + A AL     S++      +    +FY+ L+ 
Sbjct: 1111 YHPQRLGSAMADHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRG 1163


>gi|5734491|emb|CAB52698.1| DNA helicase [Prochlorococcus marinus]
          Length = 519

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/450 (9%), Positives = 124/450 (27%), Gaps = 74/450 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV- 103
           + +     T +A +E++     +  +K   L  I    +  +   T  + +   L   + 
Sbjct: 56  SEILAVTFTNKAAREMKDRLEILLAQK---LAKI----EFGQPFSTLKISIQSELRTRIY 108

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA-----NAIWLAKNL--ADI- 155
             + + + +     ++   L   I+    +  L      +     +A+ L K +   D+ 
Sbjct: 109 REVIKEIWIGTFHALFARLLRFDIEKYVDKEGLKWTRHFSIYDEKDALSLIKEIVTGDLQ 168

Query: 156 --------------IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
                         I   + +    + L                     A + + + L  
Sbjct: 169 LDPKRFEPKKIRWAISNAKNKGILPDILEESAEGLRS-------RLTAKAYRVYRKALAA 221

Query: 202 LNASSPVGYQIALMRAEAEHLMKG-----TKGPIIIAGSTGSIPATARLMSTVA------ 250
            NA       +  ++   +              +++     +      L+  +       
Sbjct: 222 NNALDFDDLLLLPVQLLQQSKETRDYWHKRFKHLLVDEYQDTNWTQYELIKLLVTNGEPP 281

Query: 251 ---NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
                  G  V    D       +     +       +   ++   Y             
Sbjct: 282 QSFKAWRGRSVFVVGDADQSIYSFRAADFRILMGFEQDFGANSKGNY------------- 328

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                  +   ++       S      ++    N + ++  +   +     + L   D+E
Sbjct: 329 ------DSNVVKLEENYRSTSNILEAANSLISNNKERIDKVLKATRSSGDLIKLTRCDDE 382

Query: 368 REEAISIAIALR----MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
             EA ++   +R     + + N    A++      +R ++  L R+ I   +   +    
Sbjct: 383 IAEAEAVVHRIRLIDAANNNLNWSDVAILYRTNAQSRVIEESLVRWNIPYIVVGSLRFYD 442

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                 + + L  +   +D +++  ++  P
Sbjct: 443 RREVKDILAYLKLLINPSDSVSLLRVLNVP 472


>gi|325673660|ref|ZP_08153351.1| exodeoxyribonuclease V gamma subunit [Rhodococcus equi ATCC 33707]
 gi|325555681|gb|EGD25352.1| exodeoxyribonuclease V gamma subunit [Rhodococcus equi ATCC 33707]
          Length = 1085

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 76/769 (9%), Positives = 194/769 (25%), Gaps = 51/769 (6%)

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
           +           A +LA++     ++      L      +           L   ++ W 
Sbjct: 126 ADDHRAGRRYGTAAHLAELFRAYGSQR--PAMLVDWAAGRDTDGTSPLDADLCWQAQLWR 183

Query: 197 ERLVELNASSPVGYQIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                + + SP     A   R   E  +      + + G T        ++S +  + + 
Sbjct: 184 RLRERIGSPSPAERLDAACARLRDEPALLELPERLSLFGPTRLGADQIAVLSALGANRDV 243

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            + +P     +   + ++   +           +     SLA+ +  L  +   +  +  
Sbjct: 244 HVWIPHPSIEMWGELADSEPPRRRADDVRALDVAHPLLASLARDVRELQSRLGAIGMVDV 303

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                            P        +DI  ++ P+       V +        +  ++ 
Sbjct: 304 HHPGP----------SRPATLLGQLQSDIAADRQPSSWPVDDTVEIHSCHGPARQVEALR 353

Query: 376 IALRMSLDENK----KKSALITADRNLARRVKLEL----------TRFGINIDISAGIPL 421
             L     ++     +   ++  D      +                        A   L
Sbjct: 354 ERLLHLFQKDPTLEPRDVVVMCPDVETYAPLVRAAFGQGVQGPLTHPGHRLRVRLADRAL 413

Query: 422 STTLHSS-ILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVAL 476
             T     ++ +LL+          +  L          +F        R          
Sbjct: 414 HQTNPVLGVVAALLDLADSRVTVSQVLDLAATAPVRRRFRFDDDNLERMREWTVAAGARW 473

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
              +       L     + + +  +   +         E   LA+ L D     I     
Sbjct: 474 GIGRRERGAFGLGDFEQNTLKSALDRILLGAAADDADGEWLSLALPLDDVESNDIDLTGR 533

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE-EGKTLSSLFSKIIETG 595
                +    +L      +        +       +     +  +        +  +E G
Sbjct: 534 LAEYVDRLDVSLRGLTGPQSAEQWSAALARALDLLVDVAEADAWQLGQARRELAAAVEHG 593

Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                   +   ++   + G   +        L +   +  R +    ++L GL++ V+P
Sbjct: 594 GDTLLRLADVRAMLRSRLAGRPTRANFRTGE-LTVCTMVPMRSVPHRVVVLLGLDDDVFP 652

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY-TRSLRENNIPTIASR 714
           + T  +          L  +       Q   D  M+   R L++ T +   N      + 
Sbjct: 653 RGTGIDGDDVLARDPLLGERDPRSEDRQLLLDAIMSASERLLLFYTGADPVNGTARPPAV 712

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            L  L  +       ++ +R            +  +    +   P  P          + 
Sbjct: 713 PLAELRDVLAAMAGADVVQR------------HPLQPFDPRNFDPVGPRSFDHAALGGAR 760

Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
             Q  +     +    L          D D  +  +   N I   +++R+    P+++  
Sbjct: 761 AAQQPSVQAPAFLPEPLPPI----EPGDVDLAELISFLENPIQGFLRQRLGFRVPDLDED 816

Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
           +   +D   +        + +          +     E  + ++    +
Sbjct: 817 VADTLDLELDPLARWGIGERMLGARLAGADPAAFRAAEWRRGTLPPARL 865


>gi|253576025|ref|ZP_04853358.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844600|gb|EES72615.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 227

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 51/178 (28%), Gaps = 39/178 (21%)

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
           YS+S +      PY  Y + IL                 G   H  I             
Sbjct: 3   YSYSRLSLYETCPYRFYQKYILGKKEPVT-----KPLALGKAVHKAIE-----LKINGIS 52

Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
           E   +++ II+S F  E                     +    +    +      +   +
Sbjct: 53  EHEAIIEAIIESDFHPEVTYEE----------------IASLVQRAPEVR-GQTEVHFVL 95

Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID-PQLSLEAAALKA 946
            +   GI L G+ D   LL+       D+K           +  D  QL+L A A+  
Sbjct: 96  PLGD-GIQLQGYID---LLEEERFW--DWK-----SNWRPYRAYDTRQLALYAWAIMK 142


>gi|229513960|ref|ZP_04403422.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TMA 21]
 gi|229349141|gb|EEO14098.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TMA 21]
          Length = 1208

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 92/893 (10%), Positives = 209/893 (23%), Gaps = 117/893 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRYWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRALYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVSPHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWTLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   +   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAIASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W      E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLVESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDTESATTWVDLTGNEDALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N    +    ++A  F            +  +E+ I  +    L++   L   D  
Sbjct: 824  LRNGNSSQEQTSAHRSAMGF----------LLQDGQESGIADLQQALLKQCENL--PDVV 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                 +         KLD                      +    +     +DP   +  
Sbjct: 872  QCPPPKRFEQAYQPPKLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQEFPL 931

Query: 789  RILKLDFIPHFKKDPDRT---------------DRGTLFHNIITELIKKRINKNTPEINH 833
              +    +   ++                      GT  H++  E+  ++   + P    
Sbjct: 932  LEVGGFDLDSAQERDGAAFESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKI 991

Query: 834  LMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV 883
            +++ +     E E LP    ++                +I  +    E +    IE +  
Sbjct: 992  ILELMESEQIEAEWLPVLQHLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 884  ---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
                     + P       +G H     L GF D +   + G   + D+K+        A
Sbjct: 1052 PTLNRITQRHDPLSAHAGDLGFHAVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 930  QKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                           D Q  + A AL     S++      +    +FY+ L+ 
Sbjct: 1111 YHPQRLGSAMADHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRG 1163


>gi|169634534|ref|YP_001708270.1| exonuclease V, beta chain [Acinetobacter baumannii SDF]
 gi|169153326|emb|CAP02437.1| exonuclease V, beta chain [Acinetobacter baumannii]
          Length = 1232

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 96/907 (10%), Positives = 224/907 (24%), Gaps = 197/907 (21%)

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-------MKGTKGPIIIAGSTGSI 239
            F     K   + L     ++       L  A            ++     I++     + 
Sbjct: 362  FCVEVKKRLPQVLQNKGETTFSQQIRTLSEALKGEQGQRFAVFVQARYPLILVDEFQDTN 421

Query: 240  PATARLMSTVANHPNGA---IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
                 +++++  HP       ++   D       +    +  T + +     + H     
Sbjct: 422  QDQDDMLASIWRHPERYQKGCMIMVGDRKQAIYGFRG-GDMLTFLNAYKDIQAKH--GRE 478

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
             KL+       +    L  V + ++ R +   +               +           
Sbjct: 479  YKLIHNHRSVAD----LVEVVDALFQRQIDFGEQVQYDPIRAGTRPHPVLIDQNQPNPHP 534

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENK-----------------KKSALITADRNLA 399
              +  +   ++  EA  +A  +R  L+++                     A+++ + +  
Sbjct: 535  --LRWLMLKDKETEAQQVAWKIRDLLNQSHAGQLYFQKDAQTQTLNEDDIAVLSRNHDGL 592

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
             +V+ EL R GI ++  +   +     +  + +LL AIF   D                 
Sbjct: 593  DKVQFELERLGIRVNRPSKRSVFDCTIAQDVGALLTAIFHPYD----------------- 635

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                        E    R   +    MDLK L+                           
Sbjct: 636  ------------EAKVKRALISRLFAMDLKQLLQ-------------------------- 657

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLS-ISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                ++   + ++  +T              +  W +          L   +   N    
Sbjct: 658  ----LEQTAEGLSQFMTGFDTIRELWSAQGFLVAWQQCLNQFGIWKNLVAVQSKDNERVV 713

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI-DGETVKPKIEKSSTLFILGTLESR 637
               + L+ + S+  E     +     ++  +   +     ++ ++   + + ++   +S+
Sbjct: 714  VNLRHLTEILSQHSEKYQGAQNLYHWYLKQLQSPLDREWELERRLSSEAGVQLMTIHQSK 773

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNP----------------------FLSRVMQSDLNLK 675
             L F  + L G +      N   N                         + + +++L   
Sbjct: 774  GLEFKIVFLLGADTPFRENNKTLNFSTQDITVSESAQTLTQRVVAIADKTYLNETELKQH 833

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
                   Q    +       H +   +L ++      S                   +  
Sbjct: 834  EERALAEQNRLWYVALTRASHRV--YALLQDTDGKSVSGLAFWKNRAEPFQHRCCTDEII 891

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA------RR 789
                   R L+        +               SFS + Q +                
Sbjct: 892  LEQPPAARHLNQHINIIEIQAQHFPDQRFYSRGKTSFSYLAQHLRHKVGTDLLASQSHEA 951

Query: 790  ILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINHL 834
            +L  D +         T +               G   H I   +  +  ++   EI   
Sbjct: 952  VLAEDELDQVISVETATAQPISWIKSNFPRGTLAGNFLHEIFEHIDFQCSDEWVSEIRRR 1011

Query: 835  MKQIIDSHFEKENL-----PPHIDIIWRHLFHKISHSFLE------HEEKIQSSIEKIF- 882
             K    S ++   +      P        L+H ++    E      ++    + ++    
Sbjct: 1012 FKNDYSSLWQDLLIKYQESFPEEQEAEYSLYHAVAEWLQEILSTPLYQGFRLNQLQPEHY 1071

Query: 883  -VNIPAKMAIESIGIH--------------------------LTGFADRIDLLKSGFVDI 915
                P  +A+    +                           L G  D +         I
Sbjct: 1072 LSECPFYLALSDRVLAMKRIQQLFAEYGMEMPELLEARSARYLNGSIDLVYFDG-QRYHI 1130

Query: 916  TDYKTG---------DNPKKETAQKLID--PQLSLEAAALKAGSFSQID----CRKVANL 960
             DYK+                 +  L     Q  L   AL      ++      + +   
Sbjct: 1131 ADYKSNYLGENLADYSVESIAQSMALASYWLQAGLYLVALHRYLKVKMQNYDIEQHLGGA 1190

Query: 961  FYIRLKQ 967
             Y+ L+ 
Sbjct: 1191 TYLYLRG 1197


>gi|213162233|ref|ZP_03347943.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 354

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 67/281 (23%), Gaps = 16/281 (5%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   + +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLKALQALGKHIEIH 237

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
           ++      +    I +              ++         
Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFR 278


>gi|91784748|ref|YP_559954.1| putative DNA helicase [Burkholderia xenovorans LB400]
 gi|91688702|gb|ABE31902.1| Putative DNA helicase [Burkholderia xenovorans LB400]
          Length = 708

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/455 (10%), Positives = 133/455 (29%), Gaps = 60/455 (13%)

Query: 10  TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE--- 66
           T  P +        +    TL        +N      + +   ++RA  E+         
Sbjct: 35  TAPPGALLVIAGAGSGKTNTLAHRVANLVVNGADPRRILLLTFSRRAALEMIRRVTRIAG 94

Query: 67  -ITGKKSTILPIIK---SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
              G ++ +   +    +   V       +      L P  +   R    A L+ + R++
Sbjct: 95  AALGTRAALAQGLTWSGTFHSVGARLLR-EYADLIGLAPAFTINDREDS-ADLMNLVRHE 152

Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
           L    K+    +  +     +  +    +L+ ++D      ++WE               
Sbjct: 153 LGLSAKERRFPAKGTCFAIYSRVVNTGASLSQVLDKAFPWCREWEA-------------- 198

Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQ----IALMRAEAEHLMKGTKGPIIIAGSTGS 238
                L++    + E   + +            +          +      +++     +
Sbjct: 199 ----DLRMLFAAYVEAKQKQSVLDYDDLLLYWSLMAAEPAIAADLSARFDHVLVDEYQDT 254

Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
               A ++  +   P+G  +    D       +   T ++     ++      P      
Sbjct: 255 NRLQASILLALK--PDGRGLTVVGDDAQSIYSFRGATVRNILDFPAHFD----PPARQVT 308

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
           L               + +  +   + VI  +      +   +    +            
Sbjct: 309 LERNYR----------STAPILAASNAVIELASERYTKNLWTDKASAQRP---------- 348

Query: 359 VALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDIS 416
             L+   +E ++A  +   +  + ++    K  A++    + +  +++ELTR  I     
Sbjct: 349 -RLVSVADEADQARYVVEQVLEAREQGMKLKSQAVLFRAAHHSAALEIELTRRNIPFVKF 407

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            G+    ++H   + ++L       D +A   +V+
Sbjct: 408 GGLKFLDSVHVKDVLAVLRWAENPRDRVAGFRVVQ 442


>gi|297243751|ref|ZP_06927681.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
            vaginalis AMD]
 gi|296888172|gb|EFH26914.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
            vaginalis AMD]
          Length = 1417

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 76/218 (34%), Gaps = 27/218 (12%)

Query: 804  DRTDRGTLFHNIITELIKKR---INKNTPEINHLMKQIIDSHFEK---ENLPPHIDIIWR 857
              +D GT FH    + IK      N     ++  + + +D +  +   EN+  ++D    
Sbjct: 1198 PASDLGTRFHAWAEQFIKTGCVNKNSIQYGVDENVDENVDENVGENVGENVGENVDENVA 1257

Query: 858  HLFHKISHSFLEHEEKI-----------QSSIEKIFVNIPAKMAIESIG-IHLTGFADRI 905
                KIS +    E K+            +    I    P    +  +G   + G  D I
Sbjct: 1258 GTCEKISQNAKSSERKLLIWKQRLITSKWAHRRPIAAEQPIVAHVPELGDQIINGKIDAI 1317

Query: 906  D------LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
                      S    I D+KTG  P K     L   QL      L   +   +D    A 
Sbjct: 1318 FAGGLNPEDPSKLYTIVDWKTGRKPTKPQDIALKLGQLDWYRLLLSLMTKVPLDAID-AT 1376

Query: 960  LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
            L+Y+ +    + +   + ++K   + L+E     LI +
Sbjct: 1377 LYYVNISD--ECEREIHAEQKTKDEILAELHSDTLISL 1412


>gi|255597686|ref|XP_002536830.1| conserved hypothetical protein [Ricinus communis]
 gi|223518400|gb|EEF25553.1| conserved hypothetical protein [Ricinus communis]
          Length = 430

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/438 (10%), Positives = 107/438 (24%), Gaps = 29/438 (6%)

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG--------TKGPIIIA 233
              +  L IA+          N    V       +A  E                 +++ 
Sbjct: 3   QALSQLLNIAAAQLWLCFQAQNEVDFVEISQRAFQALQEGDEATELAMRLDYRIQHLLVD 62

Query: 234 GSTGSIPATARLMSTVANHPN---GAIVLPGLDCHIPTAIWNTI--TEKSTNITSSNTTY 288
               + P    L+  +        G  +    D       +                   
Sbjct: 63  EFQDTSPMQIDLLKALTRGWQPDDGRTLFAVGDPMQSIYRFRKANVGLFLNAALHGIGDI 122

Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
           +  P            +     +    +           + ++ P   +    T      
Sbjct: 123 ALTPLKLWRNNRSRPPVVDWINQTFQGMLPASDAPQQ-GAIAYRPFVATRAEATGAGVFV 181

Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRVKLELT 407
            P I    S+     AD    EA  I   ++ +  +N     A++   R     +  E+ 
Sbjct: 182 HPLITPVNSEDE-EPADIRHLEAEQIIRIIQQTRADNPDATIAVLVRARKHLHALVTEMR 240

Query: 408 RFGINIDISAGIP--LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
           R    +   A     L+       L +L +A+ +  D +    L++ P       + +  
Sbjct: 241 RNHAELSFQAVEIEELANRQIVQDLLTLTHALHQRADRVHWLALLRAPWCGLTLADMHAL 300

Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL--AVLL 523
                   +   G ++   ++    ++    A  +          + + + +        
Sbjct: 301 --------IGQDGQRSVLSLLSDDHILARLSADGQTRARHVREVMQSALQWRGRTTVSRW 352

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
           V +    +         ++      +            Q         +  L+   + K 
Sbjct: 353 VHNTWLRLGGANCLWN-ESDVQDVQAFFARIAALEQHGQFNPQALADDVQKLYAAPDAKA 411

Query: 584 LSSLFSKIIETGSCIKAN 601
            +SL    I     ++ +
Sbjct: 412 DASLQFMTIHKSKGLEFD 429


>gi|197124367|ref|YP_002136318.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196174216|gb|ACG75189.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 1111

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 74/750 (9%), Positives = 174/750 (23%), Gaps = 79/750 (10%)

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMS------TVANHPNGAIVLPG-----LDC 264
                    +     +++     + P  A ++        VA       ++PG      D 
Sbjct: 372  DRAVRAEYQALFDHVMVDEFQDTDPLQAEVVLYLCEQGAVAGDWRDVRLVPGKLTIVGDP 431

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                  +            +      H    +AKL      +   V+ L    + + G++
Sbjct: 432  KQSIYRFRRADIGVYAAVRAIVERGPH---VVAKLKASFRCEPALVRWLNGTFDGVLGKA 488

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQK----CFSDVALIEADNEREEAISIAIALRM 380
               +  F P   +      +   +            +  +  + +    EA ++A  LR 
Sbjct: 489  AGDAPVFDPEAGTVANEPLLAGREGGAPSAVQVLPLAAESGKKPELRATEAKALAAWLRW 548

Query: 381  SLDENKK----------------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
             ++  ++                  A++         +  EL R G+      G      
Sbjct: 549  LIEGKRRTIVDPATGAPRPAGYGDVAVLVTATGNLPLLFPELDRLGVPYAARGGTLFLED 608

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                     L A+   +D +A A L++ P       +   +RA +               
Sbjct: 609  PLHQQFLLGLRALADRDDGVAQAALLRPPFFAVDHDDLARARAAD--------------- 653

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
                             +  V   ++  +   +     L          L+       + 
Sbjct: 654  -------------PASTHAGVLRARAAQAVVRELRRTRLDRSPGATARDLLERTAFGRAA 700

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                + +   +        +          L ++     L +     ++           
Sbjct: 701  ALGPNGAQRLEALRELCLVLDAVAAEG---LDYDAATARLRAWVDDAVQLDPPRPVGTDA 757

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
               +      G            +   G       +     +       W        + 
Sbjct: 758  VQILTVHQAKGLEFPVV------VLWDGCANLAARDVRAPFVVDRTGEAWAVALDGLEWE 811

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
                      +       +    +  A   R L+      E +   I  R +        
Sbjct: 812  EPEGGEVAGREKRYLDAERLRLVYVAATRARDLLVLPVAGEPDPEWITGRLVSGEPAAPV 871

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                  L         W R+      +P          + A  R+ S    +        
Sbjct: 872  ETLEPYLIGAE---PAWAREHPAPAPRPPTDGSALAAEVRAAWRSASADAARPRFAPASV 928

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                  L        +    R +R + +  +  + +   I              +     
Sbjct: 929  TGEAHALVEAAERPGEAGAPRPERASRYGRVFGDTVHLAIGLALRGPALAPAAAVARAAA 988

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
               L          +   ++   LE     ++   ++ +  P  +A+   G  + G+ D 
Sbjct: 989  ATGLSERRAEAADDVARALAA--LEQAGLRRAPGSELQLEYP--VALAGDGKLVQGYVDL 1044

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQKLID 934
            + +     V   D+KT   P  +       
Sbjct: 1045 LGVRGGRVVV-VDFKTDAPPAGDVHASHAA 1073


>gi|83816462|ref|YP_444656.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
 gi|83757856|gb|ABC45969.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
          Length = 712

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 74/745 (9%), Positives = 187/745 (25%), Gaps = 120/745 (16%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TL+    Y          + +   T+RA  ++ +    +   +   +    +      E
Sbjct: 56  RTLIYRLAYLVETGTRPQQIVLLTFTRRAANDMTARASNLLDGRCEKV-RGGTFHAFCLE 114

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                               R   +               +  Y +     P        
Sbjct: 115 VLRQHAEAL--------GFPRNFTVLDAADAADVLSVIRTRGEYGDGEERFPQK------ 160

Query: 148 LAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
               L  +       ++   E +     +   +        L+ A + + +    ++   
Sbjct: 161 --NTLYSMFSSATNRDETLGETITKRYPQFTSLHAE--LKALRDAYRRYKKEHGLMDFDD 216

Query: 207 --PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                 ++     +  H +      +++     +    A L+   ++      V+   D 
Sbjct: 217 LLERTLELLETDDDVRHQVASRCRHVLVDEYQDTNALQAELVKKFSSVHGNVTVV--GDD 274

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +     ++          +          +  L+      + + +++      +
Sbjct: 275 AQSIYKFRGADFRNIFRFPDEFDDTE---------VVKLEHNYRSTQPILDLA------N 319

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
            VI ++    D +    T+  E ++P         AL+ A +   EA  +A  +    ++
Sbjct: 320 RVIEQAERSYDKT--LFTEKTEGELP---------ALVPAADGDMEARFVAEMVLRLRED 368

Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                  A++    + A  +++EL +  I      G+ L+   H   + + L  +    D
Sbjct: 369 GVPLSDVAVLFRSSHNAYDLEVELNQRNIPFVKYGGMKLNEAAHIKDVLAHLKVVENPQD 428

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             +                        AL+L+   G K +  +++  +   +   T  + 
Sbjct: 429 AASWN---------------------RALQLIHGIGPKTAQSLIEWTTEAAEDPLTLGDG 467

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                  +   ++       +          +            N    D  K       
Sbjct: 468 APFSDRYAARLKQLFSTLRHVRSDDTSVTEQVEAILDYYQPLFENKYADDHPKRAPDL-- 525

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                           E    L++         S +  + IE   +     + +      
Sbjct: 526 ----------------EHLAGLAANHESRQRFLSSLTLDPIELTALDQETGEDDE----- 564

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                L +     ++ L F T+ L    +G  P              S   L+       
Sbjct: 565 ---PPLVLSTIHSAKGLEFHTVFLIRALDGTIP--------------SRHALREPGGVDE 607

Query: 683 QAAHDFEMANGTRH-LIYTRS-----LRENNIPTIASRWLQRLL-VLGGTDFFDNLKKRG 735
           +    +         L  +         +    T  SR+++ L   +             
Sbjct: 608 ELRLFYVAVTRAEEGLFISYPMTQYRRGQGEYMTTPSRFVEDLPDDVLEPVQLVEEDAVD 667

Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPF 760
           +   D     D      + + P P 
Sbjct: 668 ENAPDAPEGGDTLPSSRNGEAPAPP 692


>gi|332974568|gb|EGK11488.1| exodeoxyribonuclease V beta subunit [Kingella kingae ATCC 23330]
          Length = 1218

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 93/832 (11%), Positives = 207/832 (24%), Gaps = 94/832 (11%)

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT-----ARLMSTVANHPNGAIVLPGL 262
                           M  T   ++I     + P          M +  +  N   V    
Sbjct: 386  ALQTNRTHATALAQAMSHTWQVVLIDEFQDTDPLQYGIFSRAFMQSSLHTENAPTVFMVG 445

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS-----LAKLLDFLDIKREDVKRLGNVS 317
            D       +      +    + N +              A+L++ +       +     +
Sbjct: 446  DPKQAIYNFRGADIFAYLQAAENVSPEQRYTLRTNFRSHARLVNSVGALFAKPQPFVLPN 505

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
                      S S L P  + +R   + +  + +  +    +    A     E   IA A
Sbjct: 506  LAYETVQAHRSNSHLSPQEAAVRVRWLNDLSL-DKTEKTDALQHTSAQWCASE---IAYA 561

Query: 378  LRMSLDENKK---------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            L  +     +           A++   R     V+ EL R  +   + +   +     + 
Sbjct: 562  LHRAGQGELRLKDKPLHAGDMAVLVRTRQEGAMVQRELKRLNVQSVLLSRDSVFQEDEAR 621

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
             + +LL           +  ++   L  +   + +  +          +  +   +  D 
Sbjct: 622  AVYALLAFFLNPQQTAHLVYVLAGCLFGYTAQQLWALQ----------QDERALSEWADE 671

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
             S+ L +         V H+  +       LA      +      L      + S     
Sbjct: 672  ASVALQKWQKVGVYAAVQHFLQQHDVIQNLLAAGNDRTLTNLGQVLELLAAEEESGRLPA 731

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            ++  W +  +        D           E  + L  + +     G         ++  
Sbjct: 732  ALYQWLQQEIAA----TQDGDSNENRALRLESDEQLVKIVTMHASKGLQYPIVYCPFVWR 787

Query: 609  ----------ITRLIDGETVKP--KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                      + +   G T+    ++  +          S  L    + L    E +   
Sbjct: 788  GKGNKGDDWQVLQGESGSTLLHKNQMTDADKEQAQKERLSEDLRLLYVALTRAEEQLVLY 847

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIG--QAAHDFEMANGT---RHLIYTRSLRENNIPTI 711
              A            L+    + + G    AH +         +    T S   +  P  
Sbjct: 848  LAAHENTHHHPFYYLLDGDAHKTWSGAKVPAHAYRQIWQQFVQKQNAETTSFEWDETPQA 907

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQC-------------YLDWTRKLDYTTKQPHYKRPK 758
            A  W Q            +   + Q              +   +          +    +
Sbjct: 908  ALLWTQNGKSSLHIQSDSDTVYQAQTVATRHYAPVVFSSFTALSSHQHAPEALANTDEAE 967

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                +  Q    S +    + ND     A             +  +    G         
Sbjct: 968  RKWDIAVQAALPSETTSLPIQNDDIWDMAHFPRGAKAGVCLHELLEYFPFGQPAEKHSER 1027

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE-----HEEK 873
            +++        +  + +  + D   +K    P ++ I      +    +L       E +
Sbjct: 1028 IVRVLNRHQIADAENWLPAVCD-MLDKVRQTPLVNGIRLCDLSR--QEWLNEMAFLFEIE 1084

Query: 874  IQS-----------SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG- 921
              +           ++    V     +    +   L GF D +   ++    + DYK+  
Sbjct: 1085 QFNLVDVQNWCKQMNLSPECVQAALSLTFRQLSGFLNGFIDTLVYTQN-QALVIDYKSNY 1143

Query: 922  ----DNPK--KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
                       E A+     Q  + A A      S+  C  V  + Y+ L+ 
Sbjct: 1144 LADYSPASLNPEIAKHHYYLQALIYAIATARYLRSRQCCPDVIAVRYVFLRG 1195


>gi|302865204|ref|YP_003833841.1| hypothetical protein Micau_0700 [Micromonospora aurantiaca ATCC
           27029]
 gi|315501750|ref|YP_004080637.1| hypothetical protein ML5_0945 [Micromonospora sp. L5]
 gi|302568063|gb|ADL44265.1| hypothetical protein Micau_0700 [Micromonospora aurantiaca ATCC
           27029]
 gi|315408369|gb|ADU06486.1| hypothetical protein ML5_0945 [Micromonospora sp. L5]
          Length = 304

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 51/200 (25%), Gaps = 13/200 (6%)

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                         +        F  +  +    + S++    + P       + +    
Sbjct: 2   RRQSAASGSKAPRPRAEQSEQLGFEGMPERLFVCTPSKLGAYADCPRRYRYAYVDRPAPP 61

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
                  +    G   H  +        ++  PE+   +   +   + +E          
Sbjct: 62  KGPPWAHN--SLGASVHTALKNWYALAPDRRRPEVLGTL---LKGTWVREGYRDD--EQE 114

Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK--SGF-- 912
           R  F +       +   +  + E + V     +    +     G  DRID      G   
Sbjct: 115 RDAFRRALTWLESYVAGLDPADEPVGVERVVAVKTAVLAF--NGRTDRIDSRPGPDGRPE 172

Query: 913 VDITDYKTGDNPKKETAQKL 932
           + I DYKTG         + 
Sbjct: 173 LVIVDYKTGRTGLDADDARG 192


>gi|260429772|ref|ZP_05783748.1| UvrD/REP helicase subfamily protein [Citreicella sp. SE45]
 gi|260419255|gb|EEX12509.1| UvrD/REP helicase subfamily protein [Citreicella sp. SE45]
          Length = 680

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 69/681 (10%), Positives = 167/681 (24%), Gaps = 80/681 (11%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELR---SEFIEITGKKSTILPIIKSLGDVV 85
           TL     +  +N      + +   ++RA  EL             K  +         + 
Sbjct: 44  TLAHRVAHLLVNGADPQRILLMTFSRRAATELTRRVERITAKAMGKGVVA------EALS 97

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                  +            ++       L   +     +   DL       L  S    
Sbjct: 98  WAGTFHAIGARI--------LREHALSIGLHPDFSIHDREDSADLMNLCRNGLGFSSTER 149

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
            + AK        I +      D        +  W     + LK     +     E N  
Sbjct: 150 RFPAK---GTCLAIYSRAVNSGDPLDEVLRDHFPWCAEWVEELKQLFGAYVTAKQEQNVL 206

Query: 206 SPVGYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
                 +A     ++             ++I     +    AR++  +   P+G  +   
Sbjct: 207 DYDDLLLAWAEVMSDEGFAAHIGGAWDHVLIDEYQDTNRLQARILMALK--PDGRGLTVV 264

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            D       +   T ++        +            +  LD      + +   +N + 
Sbjct: 265 GDDAQSIYAFRAATVRNILDFPDAFSP--------RADVITLDRNYRSTQPILEAANAVI 316

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
           G +           T ++  T   + +            ++    E ++A      +   
Sbjct: 317 GLA-------RERYTKNLWTTRASDARP----------RIVTVATEADQARHFVDRILED 359

Query: 382 LD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
            +     +  A++    + + +++ ELTR  +      G+    + H   L ++L     
Sbjct: 360 RETGTRLRDQAVLFRTSSHSVQLEAELTRRNVPYVKFGGLKFLDSAHVKDLLAVLRLARN 419

Query: 440 LNDFMAIATLVK-----HPLAKFGFPEKYLSRA----KNALELVALRGNKNSYDIMDLKS 490
             D +A   +++      P A     +     A             R   +    ++  +
Sbjct: 420 PRDRVAGFRVLQLMPGIGPKAAGRILDALDLAADPLTVLREIPPPARAAADWPAFVEAMA 479

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKE-------LAVLLVDHILQCITPLVTYKTNKNS 543
              D  A                 ED E           +          L     +   
Sbjct: 480 ARADWPAGLGLARAWYEPHLDRLHEDAETRHADLMQLEQIAAGFPSAEAFLTELTLDPPD 539

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF------SKIIETGSC 597
              + +           L  +   + ++  +++                   ++ E    
Sbjct: 540 ATSDRAGKPLQDEDYLILSTIHSAKGQEWRSVYLLNAVDGCIPSDLGTGSSHELEEERRL 599

Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL-----ESRLLNFDTLILGGLNEG 652
           +        D +T  +       +  ++    +  T      ++ L  F+ +    L   
Sbjct: 600 LYVAMTRAKDHLTLGLPLRFYVTQQGRNGDRHVYATRTRFIPKAMLGRFEQVTWSPLPRP 659

Query: 653 VWPKNTAKNPFLSRVMQSDLN 673
                  +   +S  M+    
Sbjct: 660 GATGPAPQRIDVSARMRQMWG 680


>gi|313896312|ref|ZP_07829865.1| hypothetical protein HMPREF9162_1870 [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975111|gb|EFR40573.1| hypothetical protein HMPREF9162_1870 [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 283

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 18/112 (16%)

Query: 858 HLFHKISHSFLEHE--EKIQSSIEKIFVNIPA---------KMAIESI-GIHLTGFADRI 905
               + +   +         S        +           +  +     + L G  DR 
Sbjct: 13  ERIRRTARQVIRRLTAWAAASEFRPQGFEVGFGGHDGVRIAEFPLADGMTLSLRGQIDRY 72

Query: 906 DLLKSGFVDIT-DYKTGDNP-KKETAQKLIDPQLSLEAA----ALKAGSFSQ 951
           D+ + G   I  DYKTG    +    +  +  QL L        L+ G+ + 
Sbjct: 73  DVSEDGAYYIVLDYKTGTVSLELPEIRHGLKMQLLLYLYVVHCLLRDGAPAG 124


>gi|260556280|ref|ZP_05828499.1| exodeoxyribonuclease V, beta subunit [Acinetobacter baumannii ATCC
            19606]
 gi|260410335|gb|EEX03634.1| exodeoxyribonuclease V, beta subunit [Acinetobacter baumannii ATCC
            19606]
          Length = 1232

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 94/904 (10%), Positives = 223/904 (24%), Gaps = 197/904 (21%)

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHL-------MKGTKGPIIIAGSTGSIPAT 242
               K   + L     ++       L  A            ++     I++     +    
Sbjct: 365  EVKKRLPQVLQNKGETTFSQQIRTLSEALKGEQGQRFAVFVQARYPLILVDEFQDTNQDQ 424

Query: 243  ARLMSTVANHPNGA---IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
              +++++  HP       ++   D       +    +  T + +     + H      KL
Sbjct: 425  DDMLASIWRHPERYQKGCMIMVGDRKQAIYGFRG-GDMLTFLNAYKDIQAKH--GREYKL 481

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            +       +    L  V + ++ R +   +               +             +
Sbjct: 482  IHNHRSVAD----LVEVVDALFQRQIDFGEQVQYDPIRAGTRPHPVLIDQNQPNPHP--L 535

Query: 360  ALIEADNEREEAISIAIALRMSLDENK-----------------KKSALITADRNLARRV 402
              +   ++  EA  +A  +R  L+++                     A+++ + +   +V
Sbjct: 536  RWLMLKDKETEAQQVAWKIRDLLNQSHAGQLYFQKDAQTQTLNEDDIAVLSRNHDGLDKV 595

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
            + EL R GI ++  +   +     +  + +LL AI    D                    
Sbjct: 596  QFELERLGIRVNRPSKRSVFDCTIAQDVGALLTAILHPYD-------------------- 635

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                     E    R   +    MDLK L+                              
Sbjct: 636  ---------EAKVKRALISRLFAMDLKQLLQ----------------------------- 657

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLS-ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             ++   + ++  +T              +  W +          L   +   N       
Sbjct: 658  -LEQTAEGLSQFMTGFDTIRELWSAQGFLVAWQQCLNQFGIWKNLVAVQSKDNERVVVNL 716

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLI-DGETVKPKIEKSSTLFILGTLESRLLN 640
            + L+ + S+  E     +     ++  +   +     ++ ++   + + ++   +S+ L 
Sbjct: 717  RHLTEILSQHSEKYQGAQNLYHWYLKQLQSPLDREWELERRLSSEAGVQLMTIHQSKGLE 776

Query: 641  FDTLILGGLNEGVWPKNTAKNP----------------------FLSRVMQSDLNLKTAE 678
            F  + L G ++     N   N                         + + +++L      
Sbjct: 777  FKIVFLLGADKPFRENNKTLNFSTQDITVSESAQTLTQRVVAIADKTYLNETELKQHEER 836

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                Q    +       H +   +L ++      S                   +     
Sbjct: 837  ALAEQNRLWYVALTRASHRV--YALLQDTDGKSVSGLAFWKNRAEPFQHRCCTDEIILEQ 894

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA------RRILK 792
                R L+        +               SFS + Q +                +L 
Sbjct: 895  PPAARHLNQHINIIEIQAQHFPDQRFYSRGKTSFSYLAQHLRHKVGTDLLASQSHEAVLA 954

Query: 793  LDFIPHF--KKDPDRT-------------DRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
             D +      + P                  G   H I   +  +  ++   EI    K 
Sbjct: 955  EDELDQVISVEAPAAQPISWIKSNFPRGTLAGNFLHEIFEHIDFQCSDEWVSEIRRRFKN 1014

Query: 838  IIDSHFEKENL-----PPHIDIIWRHLFHKISHSFLE------HEEKIQSSIEKIF--VN 884
               S ++   +      P        L+H ++    E      ++    + ++       
Sbjct: 1015 DYSSLWQDLLIKYQESFPEEQEAEYSLYHAVAEWLQEILSTPLYQGFRLNQLQPEHYLSE 1074

Query: 885  IPAKMAIESIGIH--------------------------LTGFADRIDLLKSGFVDITDY 918
             P  +A+    +                           L G  D +         I DY
Sbjct: 1075 CPFYLALSDRVLAMKRIQQLFAEYGMEMPELLEARSARYLNGSIDLVYFDG-QRYHIADY 1133

Query: 919  KTG---------DNPKKETAQKLID--PQLSLEAAALKAGSFSQID----CRKVANLFYI 963
            K+                 +  L     Q  L   AL      ++      + +    Y+
Sbjct: 1134 KSNYLGENLADYSVESIAQSMSLASYWLQAGLYLVALHRYLKVKMQNYDIEQHLGGATYL 1193

Query: 964  RLKQ 967
             L+ 
Sbjct: 1194 YLRG 1197


>gi|308234984|ref|ZP_07665721.1| hypothetical protein GvagA14_01965 [Gardnerella vaginalis ATCC 14018]
 gi|311115084|ref|YP_003986305.1| hypothetical protein HMPREF0421_21200 [Gardnerella vaginalis ATCC
            14019]
 gi|310946578|gb|ADP39282.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019]
          Length = 1638

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 893  SIGIHLTGFADRIDLLK--SGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
             + + + G  DR+++ K       + + DYKTG  PK +      D QL     
Sbjct: 1422 DLRVRIQGRIDRMEIRKLNDNTEQIRLIDYKTGKVPKTQQVFN--DLQLICYQL 1473


>gi|237748331|ref|ZP_04578811.1| exodeoxyribonuclease V [Oxalobacter formigenes OXCC13]
 gi|229379693|gb|EEO29784.1| exodeoxyribonuclease V [Oxalobacter formigenes OXCC13]
          Length = 1246

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 99/886 (11%), Positives = 202/886 (22%), Gaps = 106/886 (11%)

Query: 174  NEKYGMWWLLAA-DFLKIASKYWTERLVELNASSP----VGYQIALMRAEAEHLM---KG 225
                 M W+     FL+        +  E    +     +    AL   E   L    + 
Sbjct: 331  EADLSMAWMRLLKRFLEETVALLKAKKQEKRVVAFDDMLIDLYKALHNPELPWLPDVLRQ 390

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT-----EKSTN 280
                 +I     + P    +  ++    +   V    D       +            + 
Sbjct: 391  QFPAALIDEFQDTDPLQYAIFRSIYGESD-LPVFMVGDPKQAIYSFRNADLHTYFAARSE 449

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
            +    T    H   S A L++  +       R    S   +      ++           
Sbjct: 450  VDYHYTLPENH--RSTAGLIEACNTVFSVNSRAFLQSGLDFLPVRNGNRERPELLDLSET 507

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAIS--IAIALRMSLD---------ENKKKS 389
             ++          +    +   +A     EA +  IA  L  S                 
Sbjct: 508  ESEASLTIWRLPDENGEWIERTKAKERAIEATADEIARLLNASAKGKLTIGEKPVCAGDM 567

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            A++      A  V   L+R GI     +   +  +  +  L  +L A+        +   
Sbjct: 568  AVLVRSHREASMVGNALSRRGIGSVSLSHESVFLSREARELECILAALLSPGSESLLKAA 627

Query: 450  VKHPLAKFGFPEKYLS-----RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
            +   +  F   E  +      R  +  E      N    + +      L           
Sbjct: 628  LSTEMLGFNAGEMDVLSNDEARLSDCFERFEQYRNSWISNGIGYALRFLMDREGIVKRLL 687

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                  R       LA LL         P    +        + +  +      T    V
Sbjct: 688  ALPDGERRMTNLMHLAELLNRESENNDAPDALLRYLAEKRESDKTGEEEELRLETDRNLV 747

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
             +    +   L F      L           +       +   ++    + +    +  K
Sbjct: 748  QIMTVHRSKGLEFAFVFCPLLWDGYSRRMPNALEGIEYHDNEKLVIDFREMDKETSQAIK 807

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
            +                  LI   L   V+        +     +S+  LKTAE      
Sbjct: 808  NDQAI------ETAAESLRLIYVALTRAVYRCYLVAGCY----SRSNAKLKTAESQRSLL 857

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                     +    +    R+      A R               ++             
Sbjct: 858  NWLVAGNGCSPDEWFLWDNRKKEDEIAAGRNAIEEAWKALEGRCRDIVLSDLPENRGVSL 917

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ------LINDPYAVYARRILKLDFIPH 798
             +                + ++ R  SFS + +         D              +  
Sbjct: 918  TETENGHDTLAAKTFNGRIVSRWRMNSFSGLMRNAVELDESGDHDEYVVAETDGSVVMET 977

Query: 799  FKKDPDRTDR------------GTLFHNIITELIKKRINKNTPEINHLMKQI--IDSHFE 844
             + +    D             G+  H +               I   ++Q         
Sbjct: 978  AQPELSTIDADDILLFPKGTFAGSCLHAMFENADFTDRESWNTAIESALQQFPQTAEVIT 1037

Query: 845  KENL---PPHIDIIWRHLFHKISHSFLEH--------EEKIQSSIEKIFVNIPAK----- 888
             E+     P +  + R +   + ++ L           EK  + +       P       
Sbjct: 1038 VEDGKNSYPDLKAMARRMMEDVLNTLLGDGIVLSSIPNEKRLTELPFCLSEAPVSAKSLN 1097

Query: 889  ------------MAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-----------DNPK 925
                        +  + +   L GF D +   + G   + D+K+                
Sbjct: 1098 ALFKRFDYPVPQLVFDDMNAFLNGFIDLVFEHE-GRFYVLDWKSNVLGTNREDYGPAPVA 1156

Query: 926  KETAQKLIDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQ 967
               A+     Q  L   AL      ++      R +    Y+ ++ 
Sbjct: 1157 MAMAEHGYHWQYLLYTVALHRFLSLRLPGYDYDRHMGGALYLFIRG 1202


>gi|330816106|ref|YP_004359811.1| Exodeoxyribonuclease V, gamma subunit [Burkholderia gladioli BSR3]
 gi|327368499|gb|AEA59855.1| Exodeoxyribonuclease V, gamma subunit [Burkholderia gladioli BSR3]
          Length = 1143

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 79/879 (8%), Positives = 178/879 (20%), Gaps = 86/879 (9%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS----- 80
           L   L+E+    P      A   + VP+    + L  +     G  + +     +     
Sbjct: 13  LADALIEHLASHPGAAGPWARQQVIVPSAALRRRLELDIAGRHGICANLEFSYLAQWLWT 72

Query: 81  -LGDVVEEKFTADLLLS----------YNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129
            +G V+     +                     + +         L              
Sbjct: 73  QIGQVLRVPPRSPFAPDRLVWRCYRLLSEAADSMDSADEGGAHGGLGEAGAAHGAAPWLA 132

Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL---------------HALKN 174
               +             LA  LA + D   T   +W                     + 
Sbjct: 133 SPRLAAYLAAADAPMRYELAHRLASVFDHYLTYRPEWLAAWRDGGSIFALEGTPSRGAEA 192

Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIA 233
            +    W  A        +     L E        +         +          + + 
Sbjct: 193 ARDDEHWQAAL------WRALVAELAEDGEPPAHRFLREAPALAPDARTLAAWPDAVSVF 246

Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
                 P    L+  ++   +  I             W  I   +   +        + Q
Sbjct: 247 ALPTMPPLHVALLRELSRWIDVRIYALNPCR----EFWFDIVSAARVESLDAAGQLDYQQ 302

Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN-- 351
                L ++    +  +  L  ++           + F            IL+ +     
Sbjct: 303 VGHPLLAEWGRQTQAQLHMLHELTETAAATDAAQYEGFAGDTWLARIQNAILDLQPEAEL 362

Query: 352 -IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT-----------ADRNLA 399
                   + +        +   +   L  +  E+   +                  +  
Sbjct: 363 GPPPAERGIEVHVCHGLARQLEVLHDRLLAAFAEDPTLAPSDVLVAVADLAAAGPLIDAV 422

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
                      +   I+   P      + +L   L    +      +   ++       +
Sbjct: 423 FGTAASQEAARVPYRITGLPPSQANPVARVLLDWLALPDREVGAPELVEWLRVDAVAARY 482

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                +       L A    +      D         A             R +  D   
Sbjct: 483 GIDAAALETVQTWLAAAGARRGLAAAND--------AAGGSVGGDDTVPVRRHTFADALA 534

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
            + L   +     P+  Y        G   +          L         +     + E
Sbjct: 535 RLFLGYAMPDGAAPVGAYLPVDGPEGGEAELLGRLARFTDDLDWFAGRIAGEQTPEAWGE 594

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS-------------- 625
                 + F       +   +   + +D +   I        +  +              
Sbjct: 595 IFADALARFFDSGAAHADALSGVRDALDALVATIREGARDLPVPAAVMRAGFAAALDDPA 654

Query: 626 ------STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-LKTAE 678
                   +        R L +  + L G+++GV P     + F    + + L   +  +
Sbjct: 655 RGGVPWGGVTFSSLTSLRGLPYRVVCLVGMDDGVLPSLARADEFDLMAVFAKLGDRQRRD 714

Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                       A     + YT     +N P   +  +  LL                  
Sbjct: 715 DERNLFLDLLLAARDRLLITYTGRSIRDNAPLPPAALVDELLDYVAEVTAGPGAAPAAIE 774

Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                 +     QP                    +   QL                  P 
Sbjct: 775 AARRAFVIEHPLQPFSADYFETGGRLYSYDAERATLAGQLARCTTGD-VPPFFAAPLPPE 833

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            +      D    + +    L++ R+     +    +  
Sbjct: 834 PEAPVAFGDFERFWRHPARALLRDRLGVALFDAQAELID 872


>gi|326905148|gb|EGE52081.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis W-148]
          Length = 1094

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 90/823 (10%), Positives = 175/823 (21%), Gaps = 125/823 (15%)

Query: 185 ADFLKIASKYWTER---LVELNASSPVGYQIALMRAE---AEHLMKGTKGPIIIAGSTGS 238
             F     +    R   L     +  +      + A    A   M+     +++     +
Sbjct: 208 LRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPARDRMRERWRIVLVDEFQDT 267

Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT---EKSTNITSSNTTYSTHPQYS 295
            P   R++    +  +  I++   D       +             T+           S
Sbjct: 268 DPMQWRVLERAFSRHSALILI--GDPKQAIYGFRGGDIHTYLKAAGTADARYTLGVNWRS 325

Query: 296 LAKLLDFLDIKRED------------------VKRLGNVSNEMYGRSMVISKSFLPPDTS 337
              L++ L     D                    RL +       R  V+ +  L  D +
Sbjct: 326 DRALVESLQTVLRDATLGHADIVVRGTDAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGT 385

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397
                + L   IP+         L          +  A              A+I     
Sbjct: 386 AHVPIEALRRHIPDDLAADVAALLASGATFAGRPVVAA------------DIAVIVEHHK 433

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            AR  +  L   GI    +    +  +  +     LL A         +          F
Sbjct: 434 DARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSGLVRAAACT--MFF 491

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G   + L+   +AL        +   D    + +     A Q           R  E D 
Sbjct: 492 GETAESLAAEGDALTDRVAGTLRECADHARHRGVAAVFQAAQLAGMGRRVLSQRGGERDL 551

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                +   + +                G   + DW +                   L  
Sbjct: 552 TDLAHIAQLLHEA---------AHRERLGLPGLRDWLRRQAKA----GAGPPEHNRRLDS 598

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +     + ++F         ++   +       R +  + +    +  +    +G  +  
Sbjct: 599 DAAAVQIMTVFV-----AKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIG-GKDG 652

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEMANGTR 695
                T+      E            L+R           T ++  G  +          
Sbjct: 653 GAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLL-RGRRPG 711

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD-----------NLKKRGQCYLDWTRK 744
                           A     +    GG    +            +   G     + R+
Sbjct: 712 QSQVPDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRR 771

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
           +D T               EA   T   +   +      AV A      D        P 
Sbjct: 772 IDTT--WRRTSYSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPS 829

Query: 805 RTDRGTLFHNIITELIKKRINKN--TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
               G+L H ++        +                    +   L P +      +   
Sbjct: 830 GASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDT 889

Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH------------------------- 897
                       Q  +      +  +M +    +                          
Sbjct: 890 PLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPL 949

Query: 898 --------------------LTGFADRIDLLKSGFVDITDYKT 920
                               L G  D +  L      + DYKT
Sbjct: 950 SPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKT 992


>gi|261856567|ref|YP_003263850.1| exodeoxyribonuclease V subunit beta [Halothiobacillus neapolitanus
            c2]
 gi|261837036|gb|ACX96803.1| exodeoxyribonuclease V, beta subunit [Halothiobacillus neapolitanus
            c2]
          Length = 1259

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 85/908 (9%), Positives = 207/908 (22%), Gaps = 127/908 (13%)

Query: 157  DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
                   ++   +  L    +  +W+              +   E+     +      + 
Sbjct: 339  MEAARHGREQSAIRLLA---HAAFWVR-----DRIDTVLQQN-AEMGFDDILLNLDRALT 389

Query: 217  AEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVAN-------HPNGAIVLPGLDCH 265
                  +  T         I     + P   R+   V               ++   D  
Sbjct: 390  GAEGQQLADTIRTQFPVAMIDEFQDTDPLQYRIFDRVFRIGGNGEAAGQAGTMILIGDPK 449

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY---- 321
                 +      S       T    +   +  +    L      V    +          
Sbjct: 450  QSIYRFRGADMFSYLAAREATQGRHYTLDANYRSTPELVAAVNYVFERADRQPSGAFGHK 509

Query: 322  -------------GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                          R                    +    +P      +   + +     
Sbjct: 510  TDEGNPLPFIRVSARGKARRLQRRNEAGEWQPCPPLTGWALPRDSLLAAGHFVEQMAEHT 569

Query: 369  EEAISIAIALRMSLD------------ENKKKSALITADRNLARRVKLEL-TRFGINIDI 415
             EAI+ ++      D               +  A++ +  + A  ++  L  R   ++ +
Sbjct: 570  AEAITSSLNAAQVGDCAFFDAEGAMTALRPQDIAILVSTGDQAAVLQQSLIRRGIKSVYL 629

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            S    L  T  ++     L AI +      +   +        + E    R    L+   
Sbjct: 630  SDRHRLFATEEAADFHRWLLAIAEPQRQDRLRAALGSSSFARHWGELDAVRNDARLDEDT 689

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
             R            +                             A L      + +T L+
Sbjct: 690  SR----------FMAYQRITRHQGILAAVYQLMHDYHIPARLLAAPLPDRSGERRLTNLL 739

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                   +      ++    L     Q V  +E      L  +E    + ++ S      
Sbjct: 740  HLADWAQNEQAQ--LAGLDALLQRYAQAVSDNEAEHELRLEQDEHLVRIITIHSAKGLQY 797

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              +    +  I       +      +      + +    E+     +  +   +      
Sbjct: 798  PVVYLPFLPLIRPKEANKNSTATPWRTSTGRGMSLGEFPEAIAAEHEAQMTESVRLIYVA 857

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR--------SLRENN 707
               A++     +                         G    I +         +     
Sbjct: 858  LTRAESACTLALGPVKFGAGKQPNQHESGLGHVLRLQGNDEFIASFEAALTDLDAQAGVT 917

Query: 708  IPTIAS----RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
            I    S    R++  +            +      +     L +   +     P+     
Sbjct: 918  IEPPPSITHARFVAPVEDSLPPARTAKRRVDSHWRISSFSGLTHALHESDVAVPETAKQE 977

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
            + +        +++ ++ P             I H  +       GTL H+++    +  
Sbjct: 978  QLRDVLSQTGTVEESLDLPQTHRFDPQSLSARISHLPRGTT---FGTLLHSLLERAGEAG 1034

Query: 824  INK--NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
             N+  N     +L++Q+  +    E+    +  +   +      S +    +  + + + 
Sbjct: 1035 FNQSANFEFSLNLVRQLASTL--TEDQQSTLAELVLRILT---LSLVTTPSRRLADVSRY 1089

Query: 882  FVNIPAKMAIES---------------------------IGIHLTGFADRIDLLKSGFVD 914
             +     + +                             +   + GF D +     G   
Sbjct: 1090 QIEQEFWLPVAQTQTSSIDALLCAHVHPGQMRPLLTAQYLEGQIKGFMDLVFE-ADGRFY 1148

Query: 915  ITDYKT---GDNPK--------KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA----N 959
            I DYK+   GD+P+                D Q+ L   AL      ++     A     
Sbjct: 1149 ILDYKSNWLGDSPEDYAPEHLVDAMLAARYDLQMVLYLTALHRHLQDRLPNYDPAVHLGG 1208

Query: 960  LFYIRLKQ 967
              Y+ ++ 
Sbjct: 1209 ALYLFVRG 1216


>gi|300694290|ref|YP_003750263.1| ATP-dependent DNA helicase ii protein (uvrd) [Ralstonia
           solanacearum PSI07]
 gi|299076327|emb|CBJ35640.2| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia
           solanacearum PSI07]
          Length = 710

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/534 (10%), Positives = 130/534 (24%), Gaps = 43/534 (8%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TL     +   N      + +   ++RA  EL S    +  +        +S      +
Sbjct: 55  HTLGWRVAHLVANGADPQRILLLTFSRRAASELSSRAGHLLARAMHGSTGARSAAGTTYQ 114

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                    + +       + L E A+ I +  +       D      +       +   
Sbjct: 115 TALPWAGTFHGI-----GARLLREYAQRIGLAPDFTIHDRSDSADLLNVVRHELNLSTKE 169

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
               L      I +     E       +++  W  +    L+     + E     +    
Sbjct: 170 RRFPLKQTCLAIYSRAINAEHPLDAVLKQHFPWCAMWQAQLRTLFDAYVEAKQAQHVLDY 229

Query: 208 ----VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
               + +   +  A+    +      I++     +    A ++  +   P+G  +    D
Sbjct: 230 DDLLLYWHAMVSDADLAAEIGARFDHILVDEYQDTNRLQASILRAL--RPDGRGLTVVGD 287

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                  +   T ++      + T           L       +  +     V      R
Sbjct: 288 DAQSIYAFRAATVRNILDFPRHFTRP----ARTVLLERNYRSTQPILDASNGVMRFATER 343

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
                 +                              LI   +E E+A  +A  +    +
Sbjct: 344 FAKTLWTDRASTHRP---------------------RLISVRDEAEQARCVAEQVLQHRE 382

Query: 384 --ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                K  A++    + +  +++ELTR  I      G+      H   + S+L       
Sbjct: 383 GGLALKSQAVLFRTASHSAPLEIELTRRNIPFVKYGGLKFLEAAHVKDVLSVLRWAENPR 442

Query: 442 DFMAIATLVK-----HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           + +A   +++      P       +     A     L+A                ++  +
Sbjct: 443 NRIAGFRVIQLLPGAGPATAARVLDAMAEAAAPVAALLAHEPPARLAGDWAALMTLMATL 502

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
              K+          +          L D        L        +       
Sbjct: 503 RAPKDGAAWAGELEAVGAWYAPHMERLHDDAAVRQGDLDQLARMAGTYASRERF 556


>gi|295677216|ref|YP_003605740.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
 gi|295437059|gb|ADG16229.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
          Length = 731

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/463 (12%), Positives = 135/463 (29%), Gaps = 72/463 (15%)

Query: 14  SSPFFREMIPALL---------NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64
            +     +  ALL           TL        +       + +   ++RA  E+    
Sbjct: 50  GTDTPDALPGALLVIAGAGSGKTNTLAHRVANLVVKGADPQRILLLTFSRRAALEMTRRV 109

Query: 65  IEITGKKS-------------TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE 111
             ITG  +             T      S+G     +   +      L P  +   R   
Sbjct: 110 TRITGAAATSVGARAALAQGLTWAGTFHSVG----ARLLREYADLIGLAPAFTINDREDS 165

Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLH 170
            A L+ + R++L    K+    +  +     +  +    +L  ++D      ++W +DL 
Sbjct: 166 -ADLMNLVRHELGLSAKERRFPAKGTCFAIYSRVVNTGASLGQVLDSAFPWCREWEDDLR 224

Query: 171 ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
            L           +         YW+    E +                   +      +
Sbjct: 225 RLFAAYVDAKQKQSVLDYDDLLLYWSHMAAEPS---------------IAADLSARFDHV 269

Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
           ++     +    A ++  +   P+G  +    D       +   T ++     +      
Sbjct: 270 LVDEYQDTNRLQASILLALK--PDGRGLTVVGDDAQSIYSFRGATVRNILDFPT------ 321

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
             Q+        L+      + +   SN +   +       L  D +  +          
Sbjct: 322 --QFEPPAKQVTLERNYRSTEPILAASNAVIELASERYTKNLWTDKASAQRP-------- 371

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTR 408
                     L+   ++  +A  +   +  + ++    K  A++    + +  +++ELTR
Sbjct: 372 ---------RLVTVADDAAQARYVVEQVLEAREQGVKLKSQAVLFRAAHHSAALEIELTR 422

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
             I      G+    ++H   + ++L       D +A   +V+
Sbjct: 423 RNIPFVKFGGLKFLDSVHVKDVLAVLRWAENPRDRVAGFRVVQ 465


>gi|315446057|ref|YP_004078936.1| DNA helicase/exodeoxyribonuclease V subunit beta [Mycobacterium sp.
            Spyr1]
 gi|315264360|gb|ADU01102.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium sp.
            Spyr1]
          Length = 1109

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 81/872 (9%), Positives = 205/872 (23%), Gaps = 78/872 (8%)

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
             L+    + + +I+ DLY          P      A  LA  +      E +  D     
Sbjct: 144  ELVESLDDLVAEIVDDLYLAHFGQDRDEPLLTHESALRLAHAVVGYAHTELRPRDPAPGS 203

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
            +    + +  A        K     L   +  S +   +    + A   M+     +++ 
Sbjct: 204  DAAVRVEFAKAVCAELETRKRKLGILHYDDLLSRLADALEAPDSPARARMQRRWSIVMVD 263

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
                + P   +++         A ++   D       +      +    ++         
Sbjct: 264  EFQDTDPVQWQVIDRAFRGH--ATLILIGDPKQAIYAFRGGDIVTYLHAAATAGVQRTLG 321

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI- 352
             +       ++  +  ++        +  R +           +       L     +  
Sbjct: 322  TNYRSDAPLVEGLQAVMRDAQLGDPRIVVRRVDAHHREHRLQGAPHNEPFRLRVCTRDQF 381

Query: 353  ---QKCFSDVALIEADNEREEAISIAIALRMSLDENKK-----KSALITADRNLARRVKL 404
                     + ++     ++ A  IA  L        +       A+I            
Sbjct: 382  RVRTDRMIPIDVLRNHIPKDMAADIAALLNSGATHCGEKLAPGDIAVIVESHRDGHACFA 441

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L   GI    +    + ++  +     LL A  + +    +          FG   + L
Sbjct: 442  ALADAGIPAVYTGDSDVFSSPAADDWMCLLEAFDQPHRSGLVRAAATT--MFFGETAEAL 499

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
            +   ++L        +   D    + +     A Q         +    E        L 
Sbjct: 500  ALQGDSLTDRIAETLRQWADFARERGVTAVFEAAQLRGMGARVLRWVDGERHMTDLAHLT 559

Query: 525  DHILQ-CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
              +         +    ++            + TV   + +  D         +  +G  
Sbjct: 560  QLLHDTAHREQYSLPALRDWLRAQRDDRGGLRGTVERNRRLDSDAAAVQIMTVWVSKGLQ 619

Query: 584  LSSLFSKIIETGSCIKANAIEWID-IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
               ++       +    + + + + + +             +SS  F     ++RL    
Sbjct: 620  FPVVYLPFAFNRNVQPRDVVVFHEPVTSDGAADIRCLHIGGESSPDFAAVAQQARLEAAG 679

Query: 643  ------TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
                   + +      V          L+  +   L  +     +     D    +    
Sbjct: 680  DDVRLTYVAMTRAQSQVVAWWAPSRDELNGGLSRLLRGRAPGDPVVPDRCDPARIDDAEA 739

Query: 697  LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
            +   R+  +   P +    +   + +      D L  R             T+     + 
Sbjct: 740  MARLRAWDDEGGPVLEESIIAERVEVELPAPPDTLAVRHFH-RRIDPLWRRTSYSGLIRA 798

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
             +    + ++P      +    +  P    A     +D        P     GTL H ++
Sbjct: 799  AEQESGVGSEPEVVELDDEVAELRGPDTEPATP--DVDMASPMAGLPMGAKFGTLVHAVL 856

Query: 817  TELIKKRINKNTPEINHLMKQIIDSH---FEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
                    +    ++   ++  +  H   +  +  P  +      +              
Sbjct: 857  ET-----ADPFAVDLAAELEAAVVEHSLWWPVDVPPAELAAALVPMHDTPLGPLAPGVTL 911

Query: 874  IQSSIEKIFVNIPAKMAIESIGIH------------------------------------ 897
                +      +  +  +                                          
Sbjct: 912  RDIGLRDRLREMEFEFPLAGGDRRDDTPDITLADVGRLLRAHLPADDPLAPYAARLTTGA 971

Query: 898  ---------LTGFADRIDLLKSGFVDITDYKT 920
                     L G  D +  +  G   + DYKT
Sbjct: 972  LAGQPLKGYLNGSLDAVLRV-DGRYLVVDYKT 1002


>gi|226226146|ref|YP_002760252.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
 gi|226089337|dbj|BAH37782.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
          Length = 702

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/672 (9%), Positives = 161/672 (23%), Gaps = 71/672 (10%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            + +   T+R+ QE+ S   E     ++      +   V           +  L    + 
Sbjct: 72  RILLLTFTRRSAQEMLSR-CERLVGPASQSVQGGTFHGVAHRLLRRFGPSA-GLPADFTI 129

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           + +              L  + +       L      A     A+ L      I +    
Sbjct: 130 LDQ---------SDAGDLMGLARSALGYGDLKNAPRSAPRFPRAETLVS----IYSRHIN 176

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH---- 221
            +   A    +    +L     ++     +  R  E N        ++      +     
Sbjct: 177 TDRPVAELLNELWPHFLAWTGDIERCFGDYIRRKSERNLLDYDDLLLSWALLLEQAPPIA 236

Query: 222 -LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
             ++     +++     + P  +R++           +    D       +   T ++  
Sbjct: 237 EQIRALYDHVLVDEYQDTNPLQSRILR---GLCTNGHITVVGDDAQSIYAFRGATIRNIL 293

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                   +          +  L+        + + +N +  RSM      L    +D  
Sbjct: 294 DFPHEFPGTR---------IVTLEQNYRSTPHILDSTNVLISRSMERYSKQLFTARTDGE 344

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNL 398
                               L+   +E  +   +   L    ++    ++ A++     L
Sbjct: 345 RPW-----------------LVTVRDESAQTAFVVDRLLELHEQGTPLREMAVLFRAGYL 387

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           +  +++EL+   I  +   G+      H   + + +  +    D ++   L++       
Sbjct: 388 SADLEIELSNRRIPYEKWGGLKFLEAAHIKDILAFVRLLENPRDEVSWYRLLRLLPGVGD 447

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
              +      N      +              L+                +     E   
Sbjct: 448 ATARNAIELLNQHGWAPMAIGAVKAPARAKPGLLAMAALFDGMGRVERADRPHSPSETIR 507

Query: 519 LAVLLVDHILQC-----------ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
           L   L D +L             +  L             L+       + T    +   
Sbjct: 508 LVRQLYDPLLNATYDDAPPRLADLDQLEIIAAGYTDRTEFLAALALEPPSSTQDLAIGST 567

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID--IITRLIDGETVKPKIEKS 625
           +      L      K        +I     +   A   +D   I        V     ++
Sbjct: 568 DEDDALILSTVHSAKGKEWDAVFVIHASDGVFPMARAAVDDAQIEEERRLLYVALTRARN 627

Query: 626 STLFILGTLES---RLLNFDTLILGGLNEGVWPKNTAK----NPFLSRVMQSDLNLKTAE 678
               +            +F    L    +        +    +   +  ++ +L L   E
Sbjct: 628 DLYVVYPLHSYATRTGADFSYTQLSRFLDPGVRNTMQRVTLGDVPDTPALRGELGLTPVE 687

Query: 679 KYIGQAAHDFEM 690
             +   A     
Sbjct: 688 PVVDLRALLRGR 699


>gi|15607770|ref|NP_215144.1| exonuclease V beta chain [Mycobacterium tuberculosis H37Rv]
 gi|15840031|ref|NP_335068.1| exodeoxyribonuclease V, beta subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|148660402|ref|YP_001281925.1| exodeoxyribonuclease V subunit beta [Mycobacterium tuberculosis
           H37Ra]
 gi|148821832|ref|YP_001286586.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis F11]
 gi|167969058|ref|ZP_02551335.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis H37Ra]
 gi|215444746|ref|ZP_03431498.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis T85]
 gi|253797568|ref|YP_003030569.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           1435]
 gi|289552882|ref|ZP_06442092.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           605]
 gi|289756711|ref|ZP_06516089.1| exonuclease subunit V beta [Mycobacterium tuberculosis T85]
 gi|294996146|ref|ZP_06801837.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis 210]
 gi|297633126|ref|ZP_06950906.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           4207]
 gi|297730106|ref|ZP_06959224.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           R506]
 gi|306774738|ref|ZP_07413075.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu001]
 gi|306781532|ref|ZP_07419869.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu002]
 gi|306783276|ref|ZP_07421598.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu003]
 gi|306787645|ref|ZP_07425967.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu004]
 gi|306794411|ref|ZP_07432713.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu005]
 gi|306796381|ref|ZP_07434683.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu006]
 gi|306806449|ref|ZP_07443117.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu007]
 gi|306966649|ref|ZP_07479310.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu009]
 gi|306970842|ref|ZP_07483503.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu010]
 gi|307078566|ref|ZP_07487736.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu011]
 gi|313657433|ref|ZP_07814313.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           V2475]
 gi|8134453|sp|P96920|EX5B_MYCTU RecName: Full=Exodeoxyribonuclease V beta chain
 gi|1877367|emb|CAB07119.1| PROBABLE EXONUCLEASE V (BETA CHAIN) RECB (EXODEOXYRIBONUCLEASE V
           BETA CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE)
           (CHI-SPECIFIC ENDONUCLEASE) [Mycobacterium tuberculosis
           H37Rv]
 gi|13880176|gb|AAK44882.1| exodeoxyribonuclease V, beta subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|148504554|gb|ABQ72363.1| exodeoxyribonuclease V subunit beta [Mycobacterium tuberculosis
           H37Ra]
 gi|148720359|gb|ABR04984.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis F11]
 gi|253319071|gb|ACT23674.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           1435]
 gi|289437514|gb|EFD20007.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           605]
 gi|289712275|gb|EFD76287.1| exonuclease subunit V beta [Mycobacterium tuberculosis T85]
 gi|308216631|gb|EFO76030.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu001]
 gi|308325701|gb|EFP14552.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu002]
 gi|308331937|gb|EFP20788.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu003]
 gi|308335722|gb|EFP24573.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu004]
 gi|308337301|gb|EFP26152.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu005]
 gi|308343158|gb|EFP32009.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu006]
 gi|308347097|gb|EFP35948.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu007]
 gi|308355672|gb|EFP44523.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu009]
 gi|308359627|gb|EFP48478.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu010]
 gi|308363506|gb|EFP52357.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           SUMu011]
 gi|323720985|gb|EGB30050.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           CDC1551A]
 gi|328457349|gb|AEB02772.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
           4207]
          Length = 1094

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 90/823 (10%), Positives = 176/823 (21%), Gaps = 125/823 (15%)

Query: 185 ADFLKIASKYWTER---LVELNASSPVGYQIALMRAE---AEHLMKGTKGPIIIAGSTGS 238
             F     +    R   L     +  +      + A    A   M+     +++     +
Sbjct: 208 LRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPARDRMRERWRIVLVDEFQDT 267

Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT---EKSTNITSSNTTYSTHPQYS 295
            P   R++    +  +  I++   D       +             T+           S
Sbjct: 268 DPMQWRVLERAFSRHSALILI--GDPKQAIYGFRGGDIHTYLKAAGTADARYTLGVNWRS 325

Query: 296 LAKLLDFLDIKRED------------------VKRLGNVSNEMYGRSMVISKSFLPPDTS 337
              L++ L     D                    RL +       R  V+ +  L  D +
Sbjct: 326 DRALVESLQTVLRDATLGHADIVVRGTDAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGT 385

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397
                + L   IP+         L          +  A              A+I     
Sbjct: 386 AHVPIEALRRHIPDDLAADVAALLASGATFAGRPVVAA------------DIAVIVEHHK 433

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            AR  +  L   GI    +    +  +  +     LL A         +          F
Sbjct: 434 DARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSGLVRAAACT--MFF 491

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G   + L+   +AL        +   D    + +     A Q           R  E D 
Sbjct: 492 GETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVLSQRGGERDL 551

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                +   +         ++       G   + DW +                   L  
Sbjct: 552 TDLAHIAQLL---------HEAAHRERLGLPGLRDWLRRQAKA----GAGPPEHNRRLDS 598

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +     + ++F         ++   +       R +  + +    +  +    +G  +  
Sbjct: 599 DAAAVQIMTVFV-----AKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIG-GKDG 652

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEMANGTR 695
                T+      E            L+R           T ++  G  +          
Sbjct: 653 GAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLL-RGRRPG 711

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD-----------NLKKRGQCYLDWTRK 744
                           A     +    GG    +            +   G     + R+
Sbjct: 712 QSQVPDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRR 771

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
           +D T               EA   T   +   +      AV A      D        P 
Sbjct: 772 IDTT--WRRTSYSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPS 829

Query: 805 RTDRGTLFHNIITELIKKRINKN--TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
               G+L H ++        +                    +   L P +      +   
Sbjct: 830 GASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDT 889

Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH------------------------- 897
                       Q  +      +  +M +    +                          
Sbjct: 890 PLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPL 949

Query: 898 --------------------LTGFADRIDLLKSGFVDITDYKT 920
                               L G  D +  L      + DYKT
Sbjct: 950 SPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKT 992


>gi|328951183|ref|YP_004368518.1| hypothetical protein Marky_1673 [Marinithermus hydrothermalis DSM
           14884]
 gi|328451507|gb|AEB12408.1| hypothetical protein Marky_1673 [Marinithermus hydrothermalis DSM
           14884]
          Length = 770

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/552 (9%), Positives = 122/552 (22%), Gaps = 32/552 (5%)

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
             + +                  K P+     + +A +E            + +     E
Sbjct: 122 RAVPEVDAEARRFKAVFRLYEALKDPHWDLDDARLAAVELAGSGRFEPEADLVIADGFRE 181

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                            V   L +       +  +P   +   +   +            
Sbjct: 182 LSPLEVRFLTGLAQRIPVWASLPKAPPGFTPTQTLPARPSRVVAY-RAANPVSELRWVLT 240

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
            I   +    A              A++++A        D         +      +   
Sbjct: 241 RIKQDLLEGYAPLDLAVIVPEERARAVQVLAEEYGLYLMDETRAGLAETEAGRVLLDLLE 300

Query: 505 VPHWQSRLSEEDKELAVLLV-DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
            P   +       E    LV     Q ++                  ++W          
Sbjct: 301 FPDHPTPSRAAHLEGLEPLVTAAFDQGLSGREALGRLAQELGLQQRYAEWMTALEPQGDP 360

Query: 564 VCLDEHRKLPNLWFEEE-GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
           +   E          E   +      ++              W  ++        ++   
Sbjct: 361 LAWAEGLIARFPVLAESPYRAALLDRAREARWLGAGPEFRRWWAALV------GEMRVFE 414

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-----NLKTA 677
              S + +L    +    F    +    EG +     ++ F+    +         L   
Sbjct: 415 RPRSGVALLTPEAASGRRFRRAYVMYAVEGAYRAGEREDYFVPEEARLPWARAFEELGLP 474

Query: 678 EKYIGQAAHDFEMA-NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
            +  G+ A  +         +I T    E          L  L         +       
Sbjct: 475 VRLRGRDAGLWAELRTRADEVILTFPEAEQGGLLEPEAGLVGLAREAVPPLPEVPPASP- 533

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                   L    +        P  P        S   ++Q    P+  +A R L LD  
Sbjct: 534 -------LLLEPARPRPLPNEAPELPPAE---RVSVEALRQYATCPFRFWAERRLPLDGH 583

Query: 797 PHFKKDP--DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
               +       +RG L  N + EL +         +    +++++  F    +      
Sbjct: 584 EAGWRALVRALRERGRLGTNALQELAEAFPEA-AAWLGAYRERLLELRF---GVWLPQRA 639

Query: 855 IWRHLFHKISHS 866
           + R     +  +
Sbjct: 640 LPRARLDAVRRN 651


>gi|256372350|ref|YP_003110174.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008934|gb|ACU54501.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 989

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 77/732 (10%), Positives = 174/732 (23%), Gaps = 62/732 (8%)

Query: 83  DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE----SPLSL 138
           DV     TA    +   +     + +   LA  I  W +        L  +       S 
Sbjct: 184 DVALRLGTALAASNAATDAQRRFLTQAQLLANAIDAWLDSPHTDASGLVADARSIGLRSR 243

Query: 139 PISPANAIWLAKNLADIIDIIETEE--KKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                    + + L + +D          W     L   +      +AA  ++   +   
Sbjct: 244 GAGIDQVRSVIQELREALDDPARRWQALGWTRADELVTVRQPQLATIAASVIRAGDERRR 303

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
                  ++        L  + A   +      +I+           RL+  + +   G 
Sbjct: 304 RVGEASFSAIERAALAVLEDSTARAELSDRWHALIVDEFQDVSENQLRLVELLTSVVQGR 363

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
             +   D       +     +     +  +             +  L+     + R+ ++
Sbjct: 364 AAV-VGDPKQAIYAFRGARPELATSFAERSA------------VIELEQSFRSLPRIIDL 410

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +N+   R++  S+   P  ++   +  I   ++   +          A   R +      
Sbjct: 411 ANDYAQRALGASERLRPTRSAPSSDGSIAVVQVVGGRAVERRRGAARAVAARIKRDITDG 470

Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
            LR       +  A++          + EL   G+    S G  L  T    +++S+L  
Sbjct: 471 TLRA------RDIAVVARRWADLDDYRRELGSVGVAAIASGGGSLLDTNVGLLVSSILRW 524

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           +   +D  A   + +  +  F   E      +  L        +   D    +  +    
Sbjct: 525 LADPSDDAAAIAVARADVIGFRDDELVAYAHERDLTRPWSTFLEALDDPRSRR--LRTLR 582

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
              +  +      +     + + A+       + +  L              S+ +   L
Sbjct: 583 DNTRGASASCAIVAACELLEIDDALAEGPDPERTLADLHAMVGLIARLATGRSLGEVVAL 642

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                                   G +L        +  +    +  + ++    +  G 
Sbjct: 643 LERLRTT-----------------GVSLPRPPVAGADAITLTTVHGAKGLEWPMVVAVGL 685

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
              P       L +  TL     + D                      S           
Sbjct: 686 EADPHPALPEGLVLHPTLGVAWRDRD------------------EQNPSSRALEIGAHLA 727

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
            E+   Q    +      R  +      + +     S            D   +   R  
Sbjct: 728 HEREQEQRRLTYVALTRARDTVLVVLDGDADSALRESLHAVGTNEWTTIDVLADEPDRDG 787

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                      ++  P     +   P    P T     I  L       +       +  
Sbjct: 788 AADGADAVPMPSSPPPDSGASEADEPAPVPPPTAPPRSIAGLAATLTCPWLAHWCGPEGA 847

Query: 797 PHFKKDPDRTDR 808
              +   D   R
Sbjct: 848 DALRHPTDGLVR 859


>gi|226358114|ref|YP_002787853.1| ATP-dependent nuclease subunit A (AddA),; UvrD/REP helicase,;
           ATP-dependent exoDNAse (Exonuclease V) beta subunit
           (RecB) [Deinococcus deserti VCD115]
 gi|226319757|gb|ACO47751.1| putative ATP-dependent nuclease subunit A (AddA),; putative
           UvrD/REP helicase,; putative ATP-dependent exoDNAse
           (Exonuclease V) beta subunit (RecB) [Deinococcus deserti
           VCD115]
          Length = 406

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/345 (7%), Positives = 78/345 (22%), Gaps = 35/345 (10%)

Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
             +  +  +        + ++    S+ L F  +I+  +      +       + + +  
Sbjct: 12  ARLSAQEAEAISPLPDAVQLMTIHGSKGLEFPVVIIADVLRQGGGRTPPVRFDVEQGVAL 71

Query: 671 DLNLKTAEKYI--------------GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
            L L   +                       +        L+   +   +          
Sbjct: 72  RLPLLEGDAPEWTALETLAKEQEGSEAERVAYVAFTRAADLLILSATGGDKGKAQE--RF 129

Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
              +     +  +      Q  +                  +  P +     +   + + 
Sbjct: 130 AAFVASLPEEGVERQYLTPQDVVPVAPLPLRLDGARLILEVRTGPGVVLPG-SLPVTSLG 188

Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
             +  P     R +     +     +               E           +I   + 
Sbjct: 189 TYLQCPRMFAYRHLEGRLPLAQLWSERQA-----------EEASNPERRAAGRQIGDAVH 237

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
           + ++  +  +++   +          +       E +  + +          + +    +
Sbjct: 238 RALEHGWTAKDMQERLPYFSEPDLKTVIGLVQAMEGETYAPLHGRTFERERPLQVTIGPV 297

Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
              G  D  D        + DYKT      E       PQL+L A
Sbjct: 298 TFEGIVDAYDR---EQRLVLDYKTDREVHPEDHL----PQLALYA 335


>gi|295097369|emb|CBK86459.1| exodeoxyribonuclease V, beta subunit [Enterobacter cloacae subsp.
            cloacae NCTC 9394]
          Length = 1180

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 90/883 (10%), Positives = 191/883 (21%), Gaps = 121/883 (13%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTG 237
             A   ++ A      R  EL     +      +      A A  +       +I      
Sbjct: 330  RAMTEIRQAVAREKRRRGELGFDDMLSRLDEALSSENGEALASAIRTHFPVAMI-DEFQD 388

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            + P   R+   +        +L   D       +      +     S         Y+L 
Sbjct: 389  TDPQQYRIFRRIWRQQPDTALLLIGDPKQAIYAFRGADIFTYMKARSEVVAH----YTLD 444

Query: 298  KLLDFL-DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
                    +          +        +        P  + +R       +        
Sbjct: 445  TNWRSAPGMVESVNALFSRMETAFMFNEIPFLPVKSAPKNASLRFEVSSAVQPAMTFWLL 504

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKK-----------------KSALITADRNLA 399
                   AD +   A   A  +R  L    +                    ++   R  A
Sbjct: 505  EGEGYGVADYQAAMAQHCAAQIRDWLSAGARGEALLWKGEQANPVKASDITVLVRSRQEA 564

Query: 400  RRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
              ++  LT   I  + +S    +  TL +  +  LL A+        + + +   +    
Sbjct: 565  ALIRDALTLLDIPSVYLSNRDSVFDTLEAQEMLWLLQAVLAPERENTLRSALASSMLGLN 624

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
              +              +    +  +    + ++              +  +    E   
Sbjct: 625  ARDIDELNHDENAWDTVVEEFVHYRERWQKRGVMAMLRELMTRRQIAENMLASSGGE--- 681

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                    +   +      +          ++  W        Q +              
Sbjct: 682  ------RRLTDILHISELLQEAGTQLESEHALVRWL------AQQIADPNSNASSQQMRL 729

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            E  K L  +    I     ++   +    I    +  +      E    +  L   E+ +
Sbjct: 730  ESDKHLVQIV--TIHKSKGLEYPLVWLPFIANYRVQDQAYYHDRETFDAVLDLSKAETSV 787

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLS---RVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
               +   L      ++   T      S     +      KT E     +A          
Sbjct: 788  ELAEAERLAEDLRLLYVALTRSVWHCSLGVAPVFRRRGEKTGESDFHLSA--LGRLIQRG 845

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                        +           + L      DN   R +   +    L+         
Sbjct: 846  E-----PKDAAGLRLCIESLCGDDIALHIPSLPDN--SRWEMAQEPATDLNARQITRVLA 898

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                        +         +            + ++      + P     GT  H++
Sbjct: 899  DDWRVTSYSGLQQHGQSIAQDLMPKLDVDAAGVGDVPVEPTLTPHQFPRGASPGTFLHSL 958

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK-- 873
              EL                + + +    K       D  W+ +     ++ L+      
Sbjct: 959  FEEL-------------DFTQPVSEEWVLKMLQSGGYDAHWQPVLTDWINAILQAPLTTQ 1005

Query: 874  ----IQSSIEKIFVNIPAKMAIES-----------------------IGIH-----LTGF 901
                 Q +     V +   + +                         +        L GF
Sbjct: 1006 GFSLRQLTARNKQVEMEFYLPVAGPLKADALDALIRQYDPLSAGCPPLNFRQVQGMLKGF 1065

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKL-----------IDPQLSLEAAALKAGSFS 950
             D +   + G   + DYK+    +   A               D Q  L   AL      
Sbjct: 1066 IDLVFRHE-GRYYLLDYKSNWLGENSEAYTQQAMAAAMQMHRYDLQYQLYTLALHRYLRH 1124

Query: 951  QID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
            +I           + Y+ L+     D  +         EL  K
Sbjct: 1125 RIADYRYDDHFGGVIYLFLRGVDAADPRSGIFSTRPDAELINK 1167


>gi|239905341|ref|YP_002952080.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
 gi|239795205|dbj|BAH74194.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
          Length = 739

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 87/723 (12%), Positives = 190/723 (26%), Gaps = 131/723 (18%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+V    +  L  +  AS+ +   T++A QE+           +     I  +      
Sbjct: 34  RTIVYRLAHLVLKGVEPASILLLTFTRKAAQEM---LTRAGLLLALGAQGISGVAGGTFH 90

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
            F    L  Y+           L+ A    I       +       S             
Sbjct: 91  AFAFAALRRYSEAAGFPGGFTCLDAADCEDILGQCKDRLGLGKGDRSFPRK--------- 141

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
               +  ++     +E +  D+ A +      +       +    + +     E N    
Sbjct: 142 --SAILGLLSKARNKELEVGDVIAREAFHLLPYAEA----ITSLGQAYGAFKAEHNLLDY 195

Query: 208 VGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                 L R  A+      L++     +++     +    ARL   +A  P G  V+   
Sbjct: 196 DDLLFTLERLLADPAGPGALIRARHSHVMVDEYQDTNKVQARLTRLLA--PEGGNVMAVG 253

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D       +   +  +     S    +          L  L+      + + N++N +  
Sbjct: 254 DDAQSIYAFRGASVDNILDFPSLFPGTK---------LIKLERNYRSTQPILNLTNAVLA 304

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            +    +  L     D      +                    ++  +A  +A  ++   
Sbjct: 305 GAGRKFEKHLFTTREDGPQPQCMRP-----------------FSDLTQASMVAAKVKELS 347

Query: 383 DENK-KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                 + A++      +  +++EL + GI      G   S   H   + + L       
Sbjct: 348 ATFPLHEIAVLFRAGYQSYALEVELGKAGIPFQKYGGQKFSEAAHIKDVLAYLRLARNTA 407

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
           DF A + ++             +  A  A +   L   K +    + K+L+    A +  
Sbjct: 408 DFPAWSRVLAFVPGIGPKTATRIFEAIRAGDRAML--GKMAAKSGEFKALIEFLDALRAL 465

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                                L+  +++   PL+T                         
Sbjct: 466 PPSP---------------QELLSKVIEAYAPLLT------------------------- 485

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
           +    D  R+   L   E+     +     +                   +++      K
Sbjct: 486 ERYPDDYPRRQAGLDQLEQIAAAYADLDAFLADL----------------VLENPDEDRK 529

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
             +   L +     S+ L +  +++  L +  +P              S   L  AE   
Sbjct: 530 KAREGHLVLSTVHSSKGLEWSAVLIIDLVDERFP--------------SRHALSRAEDLE 575

Query: 682 GQAAHDFEMANGTRHLI-------YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            +    +      R  +         +       P + S +L+ L      +  + L   
Sbjct: 576 EERRLLYVACTRARDYLGLFSPETLYQRQGGGCAPAMPSIFLRELPQGLLAERRERLGGS 635

Query: 735 GQC 737
           G  
Sbjct: 636 GAA 638


>gi|251772975|gb|EES53533.1| UvrD/REP helicase [Leptospirillum ferrodiazotrophum]
          Length = 1166

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 99/901 (10%), Positives = 198/901 (21%), Gaps = 148/901 (16%)

Query: 139  PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA------DFLKIAS 192
            P+ PA    L   L + +        +   L AL   +  +             F +   
Sbjct: 266  PLPPAGFSSLDDELVEFLKTSSPGAAQPSALAALAGLREYLESARTLSSSLRERFRREVH 325

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-----------IIAGSTGSIPA 241
            + ++   ++      V     ++      LM      +            +     +  A
Sbjct: 326  REFSSVALKKREHQGVETFDDMIGRVVAGLMGPRGEELARLLRKRFPVAFVDEFQDTDYA 385

Query: 242  TARLMSTVANH-----PNGAIVLPGLDCHIPTAIWNTIT-------EKSTNITSSNTTYS 289
               +   +             ++   D       +            ++     +    S
Sbjct: 386  QFAIFGRIYELVSKDSDGETSLVLVGDPKQSIYRFRGADLDAYVEAREAVLKKDAEGLCS 445

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                Y    L                +S E      V  K   P    D   +D     +
Sbjct: 446  LGVNYRSDALHVEAVNTLFSRHPDPFISGERIVYHPVTPKKTGPSGFLDPAESDEGLPPV 505

Query: 350  ----PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405
                    + FS+   ++        +    ALR           L+    + A  +   
Sbjct: 506  LFAIDPEGEAFSNKDFVDWAAREILRLLSGPALREGKPLRPDDICLLVRTNSHATMMLEA 565

Query: 406  LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
            L   GI     AG  +     +  L  LL A+    D   +  ++  PL +    E    
Sbjct: 566  LESLGIPAVSYAGGNVLRGEMAFDLEMLLLALKDPGDRRQMRLVLSSPLFEVPAREL--- 622

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                                  L       +   + +                    L  
Sbjct: 623  ----------------------LSMEDDPELWNARVDPFFRTAADWFRLGAMGALRRLCL 660

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
                    L               +       +  ++++  D               TL+
Sbjct: 661  ETRVFSRILGGGAGRSGRRRLTDLL-----HLIEIVESLDRDRP-------------TLA 702

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
             L  + +E     +              D  T          + IL    ++ L F  +I
Sbjct: 703  LLVDRYLEARRESEKKG-----------DDATAPRLDTLDGRVRILTIHRAKGLEFPLVI 751

Query: 646  LG---------GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
            L             E        ++     +M+      T   +           + +  
Sbjct: 752  LPLGLSGGDLSPAEEEEGEGEGEESETPEEMMRLLYVALTRAVHRTVVMLPCRYVSQSSL 811

Query: 697  LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
                     +      +    R  +      +  L             L   +       
Sbjct: 812  ARLLSGGSSSGGKRGEAVSFFRKEIARLVAEYPALFGEALPPDRQREGLSPESLPALLPP 871

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK----LDFIPHFKKDPDRTDRGTLF 812
             +   PL A  R  SFS + +   +   +++  +          P    +P     GT+F
Sbjct: 872  RRLPRPLPAPLRVESFSSLARGGREGRTLFSPALRGDDDLPWERPAGDPEPGGPLFGTVF 931

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSF 867
            H     L+         +    + + +D    +                  L  +   + 
Sbjct: 932  HRTFEILLSSAPPGEARDPFRELPEALDRAMAESSSDLGGQAEAFREALFPLCARTLSAG 991

Query: 868  L--------EHEEKIQSSIEKIFVNIPAKMAIESI-------------------GIH--L 898
            L              + +     V     +    +                    +   +
Sbjct: 992  LFPDPAVPGGWFAFARIASLPRSVEREFLLPAGGLSERDLRPYLFPEGAPLSFDPVRGMI 1051

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNP-------------KKETAQKLIDPQLSLEAAALK 945
             GF D +           DYKT   P              +  AQ   D Q  L + AL 
Sbjct: 1052 RGFVDLLFRQGEKTYL-LDYKTNRLPGESEAAAYGPEGLSRAMAQHRYDFQGLLYSLALH 1110

Query: 946  A 946
             
Sbjct: 1111 R 1111


>gi|308069947|ref|YP_003871552.1| ATP-dependent nuclease subunit A [Paenibacillus polymyxa E681]
 gi|305859226|gb|ADM71014.1| ATP-dependent nuclease subunit A [Paenibacillus polymyxa E681]
          Length = 1339

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/631 (10%), Positives = 159/631 (25%), Gaps = 67/631 (10%)

Query: 213  ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
             L+ ++A    K     +++     +      ++  V+    G   +   D       + 
Sbjct: 399  KLLPSDAALEYKAQFDEVLLDEYQDTNTVQEDIVRLVSREEPGNRFM-VGDVKQSIYRFR 457

Query: 273  TITEKST---NITSSNTTYSTHPQYSLAK-------LLDFLDIKREDVKRLGNVSNEMYG 322
                          S           LA+       ++D +++    +  +     E   
Sbjct: 458  LAEPGLFLNKYQRYSMQEQEDGFLIDLARNFRSRQEVVDAVNLVFRQIMSVDVAEIEYDE 517

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA---------------------L 361
            R+ ++  +  P   SD     +   ++  + K    ++                     L
Sbjct: 518  RAWLVHGASYPDP-SDQDAASVYAPELLLVDKGGQGLSEASELSETGDESALQESELAEL 576

Query: 362  IEADNEREEAISIAIALRMSLDENKKK------------------SALITADRNLARRVK 403
             E +  + EA +IA  ++    +  +                     ++    ++   + 
Sbjct: 577  AELETAQLEARAIAQRIKELTGDTGQPLLIYDRGLKAMRPAVYGDIVILLRSASVWAPLI 636

Query: 404  -LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
              EL   GI                 ++ SLL+ I      + +A++++ P+      E 
Sbjct: 637  VEELRLEGIPASGEQTTGFFKATEVEVMLSLLHIIDNPQQDIPLASVLRSPIVGLTEDEL 696

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               R +    L        +      +S         + +       S     ++     
Sbjct: 697  AQIRLEKPDGLFYGALLAAAEADPLEESEKGISAEIMELDLFPKDSFSSSDFGNRNDGNT 756

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            L   +   +  L  ++        +  I +  + T   L  V                  
Sbjct: 757  LSARLRSFLRNLEAWRQEARQGSLSALIWNVLEET-GYLDWVGGLPGGSQRQNNLRALYD 815

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
                   +   +   +         +  R  D  ++    E    + I+   +S+ L F 
Sbjct: 816  RARQY--ETSTSNRGLFRFLAFISRLRERGGDLGSISGGTEPDQAVRIMTIHKSKGLEFP 873

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
             + + G  +    ++      + + +      K  E+    +          R       
Sbjct: 874  IVFIAGTAKMFNQQDLNAPFLMHKEL--GFGPKYVEEQNRVSYPTLPNLAIRRRSQL--- 928

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH-----YKRP 757
                    +    L R                      W R  ++T            R 
Sbjct: 929  ELLAEEMRVLYVALTRPREKLIMTGTVKDLAS--RAAGWARAKEHTEIVLPDYMLAAGRS 986

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                   A  R  S + +++   D    Y R
Sbjct: 987  YLDWVGSALIRHPSATLLREAAGDQDGYYHR 1017



 Score = 41.4 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 50/181 (27%), Gaps = 36/181 (19%)

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                   +    T+RGT++H ++  L           ++  + +   +    + +   + 
Sbjct: 1145 RPKFMGNQRLTPTERGTVYHTLMLHL------PLDGGMSAEVIEETKARLLNQRMLLDVH 1198

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---------------------- 891
                    KI   F             +   +P    +                      
Sbjct: 1199 AKALDT-DKILRFFTSELGSRMLGASHVQRELPFTYTMRAADYWNHSLPSVLPGQETDSE 1257

Query: 892  ---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID---PQLSLEAAALK 945
               +   + + G  D +     G + + DYKT    +  T   L D    QL L A  ++
Sbjct: 1258 VGQDGDKVLMNGIIDCLFETPEG-LVLVDYKTDRISEYRTLSHLTDQYRFQLELYARVIE 1316

Query: 946  A 946
             
Sbjct: 1317 E 1317


>gi|218291382|ref|ZP_03495325.1| hypothetical protein AaLAA1DRAFT_2911 [Alicyclobacillus
            acidocaldarius LAA1]
 gi|218238737|gb|EED05953.1| hypothetical protein AaLAA1DRAFT_2911 [Alicyclobacillus
            acidocaldarius LAA1]
          Length = 306

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 67/244 (27%), Gaps = 35/244 (14%)

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
              T ++S I          +    L+L             D G+ FH  +    + +   
Sbjct: 1    METLTYSRISTRARCAMREHLHYELRLRPRQIQW----SLDIGSSFHAAMEAWNRGQSEA 56

Query: 827  NTPEINHLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                        + +  +   E     +  +   +  + +              E I + 
Sbjct: 57   EAVAAALARLNEVAARIDDPVELEKLPVKSVQVEVMVRAAIRC-------FPKYEPILIE 109

Query: 885  IPAKMAI-------ESIGIHLTGFADRIDLLKSGFVDITDYKT-GDNPKKETAQKLIDPQ 936
               ++ I        S    L G  D I     G + + +YKT G +  +   +  +D Q
Sbjct: 110  HEFRVPIVNPLTGRASRTFRLAGKIDAIVRTPDGRLWLLEYKTSGQSLDQFRMRYGLDNQ 169

Query: 937  LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
            ++    A +      I              +   +  I   + +    E  ++  + L  
Sbjct: 170  INYYILASRMALGLPI--------------EGALVRVIIKPRTEPRRGETLDEYRERLKA 215

Query: 997  IVTL 1000
            +   
Sbjct: 216  LYEE 219


>gi|294506408|ref|YP_003570466.1| ATP-dependent DNA helicase [Salinibacter ruber M8]
 gi|294342736|emb|CBH23514.1| ATP-dependent DNA helicase [Salinibacter ruber M8]
          Length = 712

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 73/745 (9%), Positives = 188/745 (25%), Gaps = 120/745 (16%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TL+    Y          + +   T+RA  ++ +    +   +   +    +      E
Sbjct: 56  RTLIYRLAYLVETGTRPQQIVLLTFTRRAANDMTARASNLLDGRCEKV-RGGTFHAFCLE 114

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                               R   +               +  Y +     P        
Sbjct: 115 VLRQHAEAL--------GFPRNFTVLDAADAADVLSVIRTRGEYGDGEERFPQK------ 160

Query: 148 LAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
               L  +       ++   E +     +   +        L+ A + + +    ++   
Sbjct: 161 --NTLYSMFSSATNRDETLGETITKRYPQFTSLHAE--LKALRDAYRRYKKEHGLMDFDD 216

Query: 207 --PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                 ++     +  H +      +++     +    A L+   ++      V+   D 
Sbjct: 217 LLERTLELLETDDDVRHQVASRCRHVLVDEYQDTNALQAELVKKFSSVHGNVTVV--GDD 274

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +     ++          +          +  L+      + + +++      +
Sbjct: 275 AQSIYKFRGADFRNIFRFPDEFDDTE---------VVKLEHNYRSTQPVLDLA------N 319

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
            VI ++    D +    T+  E ++P         AL+ A +   EA  +A  +    ++
Sbjct: 320 RVIEQAERSYDKT--LFTEKTEGELP---------ALVPAADGDMEARFVAEMVLRLRED 368

Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                  A++    + A  +++EL +  I      G+ L+   H   + + L  +    D
Sbjct: 369 GVPLSDVAVLFRSSHNAYDLEVELNQRNIPFVKYGGMKLNEAAHIKDVLAHLKVVENPQD 428

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             +                        AL+L+   G K +  +++  +   +   T  + 
Sbjct: 429 AASWN---------------------RALQLIHGIGPKTAQSLIEWTTEAAEDPLTLGDG 467

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                  +   ++       +          +            N    D  K       
Sbjct: 468 APFSDRYAARLKQLFSTLRHVRSDDTSVTEQVEAILDYYQPLFENKYADDHPKRAPDL-- 525

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                           E    L++         S +  + IE   +     + +      
Sbjct: 526 ----------------EHLAGLAANHESRQRFLSSLTLDPIELTALDQETGEDDE----- 564

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                L +     ++ L F T+ L    +G  P              S   L+       
Sbjct: 565 ---PPLVLSTIHSAKGLEFHTVFLIRALDGTIP--------------SRHALREPGGVDE 607

Query: 683 QAAHDFEMANGTRHLIYT------RSLRENNIPTIASRWLQRLL-VLGGTDFFDNLKKRG 735
           +    +         ++           +    T  SR+++ L   +             
Sbjct: 608 ELRLFYVAVTRAEEDLFISYPMTQYRRGQGEYMTTPSRFVEDLPDDVLEPVQLVEEDAVD 667

Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPF 760
           +   D   + D      + + P P 
Sbjct: 668 ENAPDAPEEGDTLPSSRNGEAPAPP 692


>gi|41615331|ref|NP_963829.1| hypothetical protein NEQ549 [Nanoarchaeum equitans Kin4-M]
 gi|40069055|gb|AAR39390.1| NEQ549 [Nanoarchaeum equitans Kin4-M]
          Length = 267

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 91/276 (32%), Gaps = 50/276 (18%)

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT---ELIKKRINKNT 828
             ++I + +  P  +Y ++I  +        +  R  RG + H          K+ +N   
Sbjct: 7    VTDIIEYLICPVRLYLKKIKNIK------IENKRLLRGKILHRAFELFDSFEKEYLNDL- 59

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI---SHSFLEHEEKIQSSIEKIFVNI 885
             E+   +++    +    N      I+  +            +  E K +++    F+  
Sbjct: 60   -ELPIELERFTKDYIIMANRGLVRAILEFNAPQTYILELKDIIHREAKFRANYVWSFIEK 118

Query: 886  PAKM------AIESIGIHLT-----GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934
              +        I    I L      G  DR++  KSG +   + KTG     +   K+  
Sbjct: 119  YGEQFYNKINPIIKSEILLKYNDLVGRIDRLEKYKSGRLIPIEIKTG---TYKEYHKI-- 173

Query: 935  PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
             QL+  A  L+    ++I    V  L+Y              D+      +  ++    L
Sbjct: 174  -QLAGYAILLEKNYNTKI---DVGLLYY-----------TKTDRYIEVELDPYKELFLEL 218

Query: 995  IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030
             E V L  +        +  ++K     +Y +   V
Sbjct: 219  YEKVKLFLD-----SPRMIANKKYCQYCDYKYFCPV 249


>gi|153213940|ref|ZP_01949136.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 1587]
 gi|124115593|gb|EAY34413.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 1587]
          Length = 1208

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 94/893 (10%), Positives = 210/893 (23%), Gaps = 117/893 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFEQIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRSLYPVAMIDEFQDTDPLQYSIFSRLYLDYPLCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   V   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLAESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDTESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F            +  +E  I  +    L++   L   D  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF----------LLQDGQEGGIADLQQALLKQCENL--PDVV 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                 +         +LD                      +    +     +DP      
Sbjct: 872  QCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPL 931

Query: 789  RILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINH 833
              +    +   ++                      GT  H++  E+  ++  ++ P    
Sbjct: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAQSEPNTKI 991

Query: 834  LMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV 883
            ++  +     E E LP    ++                +I  +    E +    IE +  
Sbjct: 992  ILDLMESEQIESEWLPVLQHLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 884  ---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKT---GDNPKK 926
                     + P       +G H     L GF D +   + G   + D+K+   GD+P  
Sbjct: 1052 PTLNRITQRHDPLSAQAGDLGFHAVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 927  --------ETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                           D Q  + A AL     S++      +    +FY+ L+ 
Sbjct: 1111 YHPQRLGSAMVDHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRG 1163


>gi|22537037|ref|NP_687888.1| exonuclease RexA [Streptococcus agalactiae 2603V/R]
 gi|81588583|sp|Q8E061|ADDA_STRA5 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|22533894|gb|AAM99760.1|AE014231_18 exonuclease RexA [Streptococcus agalactiae 2603V/R]
          Length = 1207

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/589 (9%), Positives = 155/589 (26%), Gaps = 42/589 (7%)

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGST 236
            L   F+   S+ + +  ++ NA          ++   E      L +     +++    
Sbjct: 357 ELLQSFVLDFSEQYLQEKIQENAFEFSDIAHFAIQILEENHDIRQLYQDKYHEVMVDEYQ 416

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS- 295
            +     R++  ++   NG       D       +     +  N       Y  +P    
Sbjct: 417 DNNHTQERMLELLS---NGHNRFMVGDIKQSIYRFRQADPQIFNDK--YKAYQDNPSQGK 471

Query: 296 -------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                       + LD        L +          +  +S      S  +      NK
Sbjct: 472 LIILKENFRSQSEVLDSTNSVFTHLMDEEVGDI----LYDESHQLKAGSPRQQERHPNNK 527

Query: 349 IPNIQKCFSDVALIEADNER-----EEAISIAIALRMSLDE---NKKKSALITADRNLAR 400
              +     +  + ++D+++      EA  +A  +     E     +   L+ + R    
Sbjct: 528 TQVLLLDTDEDDIDDSDSQQYDISPAEAKLVAKEIIRLHKEENVPFQDITLLVSSRTRND 587

Query: 401 RVKLELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
            +     R+GI +    G      ++   ++   L +I    +  A+  L++ P+  F  
Sbjct: 588 GILQTFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNE 647

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
            +      ++       +   + +       L+   ++  K +  +  +Q+         
Sbjct: 648 DDLTRIAIQDVKMAFYHKVKLSYHKEGHHSDLITPELS-SKIDHFMKTFQTWRDFAKWHS 706

Query: 520 AVLLVDHI---LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC-LQNVCLDEHRKLPNL 575
              L+  I         +      +       +++           + +          L
Sbjct: 707 LYDLIWKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVL 766

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             E +   +     +     + +  +  + ++     I     K  +   ++  IL   +
Sbjct: 767 ENENDLADVEVALPQ--NAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQ 824

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
              + +   +   L E + P        L   +      +     + +      +A    
Sbjct: 825 GIGIKYVADMRHELEEEILPAVKVSMETLPYQLNKR---ELRLATLSEQMRLLYVAMTRA 881

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                   + +         L                   Q +L    +
Sbjct: 882 EKKLYLVGKASQTKWADHYDLVS-ENNHLPLASRETFVTFQDWLLAVHE 929



 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 14/148 (9%)

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
            D    G+  H ++  +      K       L +   ++  +       I+  ++      
Sbjct: 1046 DPAALGSAVHELMQRIEMSSHVKMEDIQKALTEVNAETSVKAAIQIEKINYFFQ---ETS 1102

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHLTGFADRIDLLKSGFVDITDYK 919
               +++ E +       +    P  M            + G  D   LL    + + DYK
Sbjct: 1103 LGKYIQEEVEH------LHREAPFAMLKEDPESGEKFVVRGIIDG-YLLLENRIILFDYK 1155

Query: 920  TGDNPKKETAQKLIDPQLSLEAAALKAG 947
            T         ++    Q++L A ALK  
Sbjct: 1156 TDKFVNPLELKERYQGQMALYAEALKKS 1183


>gi|76787847|ref|YP_329619.1| exonuclease RexA [Streptococcus agalactiae A909]
 gi|77406401|ref|ZP_00783461.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
 gi|77410683|ref|ZP_00787042.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
 gi|123601917|sp|Q3K1I4|ADDA_STRA1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|76562904|gb|ABA45488.1| exonuclease RexA [Streptococcus agalactiae A909]
 gi|77163219|gb|EAO74171.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
 gi|77174992|gb|EAO77801.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
          Length = 1207

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/589 (9%), Positives = 155/589 (26%), Gaps = 42/589 (7%)

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGST 236
            L   F+   S+ + +  ++ NA          ++   E      L +     +++    
Sbjct: 357 ELLQSFVLDFSEQYLQEKIQENAFEFSDIAHFAIQILEENHDIRQLYQDKYHEVMVDEYQ 416

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS- 295
            +     R++  ++   NG       D       +     +  N       Y  +P    
Sbjct: 417 DNNHTQERMLELLS---NGHNRFMVGDIKQSIYRFRQADPQIFNDK--YKAYQDNPSQGK 471

Query: 296 -------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                       + LD        L +          +  +S      S  +      NK
Sbjct: 472 LIILKENFRSQSEVLDSTNSVFTHLMDEEVGDI----LYDESHQLKAGSPRQQERHPNNK 527

Query: 349 IPNIQKCFSDVALIEADNER-----EEAISIAIALRMSLDE---NKKKSALITADRNLAR 400
              +     +  + ++D+++      EA  +A  +     E     +   L+ + R    
Sbjct: 528 TQVLLLDTDEDDIDDSDSQQYDISPAEAKLVAKEIIRLHKEENVPFQDITLLVSSRTRND 587

Query: 401 RVKLELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
            +     R+GI +    G      ++   ++   L +I    +  A+  L++ P+  F  
Sbjct: 588 GILQTFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNE 647

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
            +      ++       +   + +       L+   ++  K +  +  +Q+         
Sbjct: 648 DDLTRIAIQDVKMAFYHKVKLSYHKEGHHSDLITPELS-SKIDHFMKTFQTWRDFAKWHS 706

Query: 520 AVLLVDHI---LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC-LQNVCLDEHRKLPNL 575
              L+  I         +      +       +++           + +          L
Sbjct: 707 LYDLIWKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVL 766

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             E +   +     +     + +  +  + ++     I     K  +   ++  IL   +
Sbjct: 767 ENENDLADVEVALPQ--NAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQ 824

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
              + +   +   L E + P        L   +      +     + +      +A    
Sbjct: 825 GIGIKYVADMRHELEEEILPAVKVSMETLPYQLNKR---ELRLATLSEQMRLLYVAMTRA 881

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                   + +         L                   Q +L    +
Sbjct: 882 EKKLYLVGKASQTKWADHYDLVS-ENNHLPLASRETFVTFQDWLLAVHE 929



 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 14/148 (9%)

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
            D    G+  H ++  +      K       L +   ++  +       I+  ++      
Sbjct: 1046 DPAALGSAVHELMQRIEMSSHVKMEDIQKALTEVNAETSVKAAIQIEKINYFFQ---ETS 1102

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHLTGFADRIDLLKSGFVDITDYK 919
               +++ E +       +    P  M            + G  D   LL    + + DYK
Sbjct: 1103 LGKYIQEEVEH------LHREAPFAMLKEDPESGEKFVVRGIIDG-YLLLENRIILFDYK 1155

Query: 920  TGDNPKKETAQKLIDPQLSLEAAALKAG 947
            T         ++    Q++L A ALK  
Sbjct: 1156 TDKFVNPLELKERYQGQMALYAEALKKS 1183


>gi|289208791|ref|YP_003460857.1| exodeoxyribonuclease V subunit beta [Thioalkalivibrio sp. K90mix]
 gi|288944422|gb|ADC72121.1| exodeoxyribonuclease V, beta subunit [Thioalkalivibrio sp. K90mix]
          Length = 1240

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 83/868 (9%), Positives = 198/868 (22%), Gaps = 109/868 (12%)

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH---PNGAIVLPGLDCHIPTAIWN 272
             A AE L +     + +     + P   R++  V      P    +L   D       + 
Sbjct: 382  EALAETLRRQFPVAL-VDEFQDTDPVQYRILERVYRIEDNPAEQGLLLIGDPKQAIYGFR 440

Query: 273  TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
                 S       T    +      +    L      +    +   E            L
Sbjct: 441  GADIHSYLKARRATAGRHYTLPRNFRSTARLVGAVNRLFAHADGWPEGAFLFGQGDAGEL 500

Query: 333  PPDTSDMRNTDILENKIPNIQKCF------SDVALIEADNEREEAISIAIALRMSLD--- 383
            P    D ++                        ++       + A + A  +   L+   
Sbjct: 501  PFHRVDAQDRGERLEHDGAEVPALTLWCTDPGTSVGTGVYREQMAAAAAEQMVRLLNGGA 560

Query: 384  --------------ENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSS 428
                             +  A++   R  AR ++  L  R   ++ +S G  +  T  + 
Sbjct: 561  DGTCGFRDGEGWRPVRPRDIAVLVRGRVEARLMQEALRARGVRSVYLSEGESVFATPEAG 620

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
             L   L A  +      +   +  P       + +            +   +    +   
Sbjct: 621  DLLRWLRACAEPTSERLLRAALATPTLGQSLADLHRLTTDELRWEHRVEQFREYRRLWQT 680

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
            + ++        +        +    E               +T L+            L
Sbjct: 681  RGVLPMLRRLLHDFDVPRRLLASADGER-------------ALTNLLHLSELLQRAAAEL 727

Query: 549  SIS-DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
                   +  +   +        ++  L  +E+   + +L          +    +    
Sbjct: 728  DGEQALIRHLIEHREGERAAADEQVLRLESDEDLVKVVTLHKSKGLEYPLVFLPFVCAFR 787

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
             +    D   +          +I           D   L      ++   T         
Sbjct: 788  AVDPKKDVPRIDRPPGGRPR-WIFRMDSRAQERADRERLAEDLRLLYVGMTRARHACWMG 846

Query: 668  MQSDLNLKTAEKYIGQAAHDFE--------------MANGTRHLIYTRSLRENNIPTIAS 713
            +   ++ +  E  + ++A  +                    R      ++         S
Sbjct: 847  LAPIVSGRGKENELHRSAVGYLLNGPEPMPNGELEDRLQEARGDESAIAIEPLPEIMGTS 906

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
              L +     G         R   ++     + +  +      P P       P +    
Sbjct: 907  VRLAQQTAALGRARTPTRPVREPWWVASYSAIAHPDE---AHAPAPLVADPVAPDSALED 963

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKD----PDRTDRGTLFHNIITELIKKRINKNTP 829
             +++    P A                      P     GT  H ++    ++       
Sbjct: 964  LLRERAETPGAGADPSHGVSRPEVPVAGGLHDFPRGPAPGTFLHGLLEWAAEQGWEAVVT 1023

Query: 830  EINHLMKQIIDSHFEKE-NLPPHIDIIWRHLFHKISHSFL-------------------- 868
            +   L  ++     +++      +   W        ++                      
Sbjct: 1024 DRARLDDEVRRRCEQRDWGDWAPVVQDWMRRLITAEYALASGGSFRLDELGVYQPELEFL 1083

Query: 869  ---EHEEKIQSSIEKIFVNIPAKMAIESIGIH----LTGFADRIDLLKSGFVDITDYKTG 921
                  +  +         +P +    +        L GF D +   + G   + DYK+ 
Sbjct: 1084 FETRWLQSRRLDAAVCEQLLPGQARPPAGDRLLNGMLKGFVDLVFEHE-GRYYVADYKSN 1142

Query: 922  DNPKKETA-----------QKLIDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLK 966
                   A           +   D QL +   AL     +++      R +    Y+ L+
Sbjct: 1143 WLGPGPDAYGPERLRDAVLEHRYDLQLVIYTLALHRQLQARMPGYDYDRHMGGGVYLFLR 1202

Query: 967  Q-KFKIDCITNDKKKYSADELSEKSLKN 993
                    + +D    +  E  +     
Sbjct: 1203 GIDAPGRGVFHDCPPRALIEQLDGWFAE 1230


>gi|290243129|ref|YP_003494799.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
 gi|288945634|gb|ADC73332.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
          Length = 611

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/470 (9%), Positives = 104/470 (22%), Gaps = 52/470 (11%)

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRL----LELARLILIWRNKLPDIIKDLYPESPLSLP 139
           + ++       +++     +   QR+    L    L          +      ++  +  
Sbjct: 46  LDQDPKHRVAAVTFTQASAIEMTQRMSAEGLPPRELQRFQAGTFHSLALSQATQARKAKA 105

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF----------LK 189
                       L + ID    +    E     +         +                
Sbjct: 106 SQILATGEWISILRNAIDQAVRDGMDPELADYEEISLQVQERQVQEKEPGEATLEKAPYD 165

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIPATARLMST 248
                + +   +             +   A+  +       +++  +    P     +  
Sbjct: 166 YIYNLFRQYKAKSKKLDFADILRFAVNGMADGSIPPLPCTHMLVDEAQDMDPLQYAWIKA 225

Query: 249 VAN--HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
            +      GA +    D       W         +       + H       L       
Sbjct: 226 HSRPGASGGAYITLVGDDDQSIYGWRYAQGYGGMMRFMTDHSAGH-----VILPVNYRCA 280

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            E +     +      R     ++  PP  +                     +      +
Sbjct: 281 PEILTPSERLIRHNANRVEKPIRAAQPPGGT---------------------ITFERVGD 319

Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
              EA +I        ++  +  A I         ++ EL    +    + G        
Sbjct: 320 PEAEADAIENRWHQLGED--ETIAYIGRSNRALDALEGELMERDVPYYRAGGGNFLDDPD 377

Query: 427 S----SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
                  LT +        D +     +   L   GFP +  + A        L      
Sbjct: 378 VAAVHRALTVVNQIAEGRGDPLPHLRQI---LIWAGFPYRVANDAIQGGGSDVLAIVDAL 434

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
            DI       + R    K + ++P W  +    + +  V  V  I     
Sbjct: 435 PDIQWDPGHEMQRQFAIKLSRNMPAWVKQAGIGNADRIVAFVARIFSGFA 484


>gi|145300876|ref|YP_001143717.1| exodeoxyribonuclease V, beta subunit [Aeromonas salmonicida subsp.
            salmonicida A449]
 gi|142853648|gb|ABO91969.1| exodeoxyribonuclease V, beta subunit [Aeromonas salmonicida subsp.
            salmonicida A449]
          Length = 1206

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 88/834 (10%), Positives = 201/834 (24%), Gaps = 133/834 (15%)

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             ++ T    +I     + P   R+   +        +L   D       +      +   
Sbjct: 376  RIRATYRVAMIDEFQDTDPQQYRIFHRLYGGHKDTALLMIGDPKQAIYGFRGADIFTYIQ 435

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS--MVISKSFLPPDTSDM 339
               N +               L         L    N ++ R+    I ++ +P    + 
Sbjct: 436  ARRNVSAH-----------YTLGRNWRSSSALVGAVNGLFERAKDPFIYEADIPFLPVEA 484

Query: 340  RNTDILENKIPNIQKCFSDVALIEADN----------EREEAISIAIALRMSLDENKK-- 387
            +                    L                R  A  I   L ++ +   +  
Sbjct: 485  QGKSKALVLDGATAPVLHCWQLAGQPTFNRGDYQSKMARATAAEIHRLLTLAREGKAQIG 544

Query: 388  -------KSALITADRNLARRVKLELTR-FGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                     A++       + V+ EL R    ++ +S    +   + +  +  +L+A   
Sbjct: 545  DQAVKAGDIAVLVRTGAEGKLVQQELARLAIASVYLSNRESVLEQVEAREILLILHACQN 604

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
             ++  ++   +   L            +       A++       I   + ++    A  
Sbjct: 605  PSEERSLRAALATGLFDLDAKALDALASDERAWESAVQEFMEYRKIWHRRGVLAMLRALL 664

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                      +    E           +   +      +   +   G  ++  W      
Sbjct: 665  HRRNLASSLLASPYGE---------RRLTNFLHLAELLQQVSSELDGEYALLRWLG---- 711

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
              + V     +    +   E  + L  + +     G       + +I            +
Sbjct: 712  --EAVSRPSGQDAEQVLRLESERKLVQIVTIHKSKGLEYPLVFLPFICSHRTAETPLYHE 769

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                 + T+  L   +S L   D   L      ++   T             L L     
Sbjct: 770  ADEAGNRTILDLTGADSSLAEADKERLAEDLRLLYVALTRGVYATW------LGLAPVRA 823

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
              G++       + T      +   E +  T+A+   +    L G    +    R     
Sbjct: 824  GNGKSEKT--DLHHTAIGYLLQKGEEGDAETLATALTELSQALPGVAVGEPSLTRPAPLP 881

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQP---------------RTYSFSEIKQLINDPYA 784
                +L     +      +    + +                       E+        A
Sbjct: 882  VEQEQLGEPQVRHFTSSLERDWWISSYSGLAAQGNGHSKGVLANPGFDDEVATESASAAA 941

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
            + A         P     P     GTL H++   +          +      + +  H  
Sbjct: 942  LLAESGEVAAPEPSIFTFPKGARPGTLLHSLFETI----------DFQSAAGESLSHHIA 991

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEK-------IQSSIEKIFVNIPAKMAIESIGIH 897
                    D  W  +  +   + L+   +           +      +  +  +    + 
Sbjct: 992  ALLAQDGFDEDWAPVLQQQVEAVLDTPLETGFGEPVRLRDLAPERKQVELEFFLPMGRVT 1051

Query: 898  -----------------------------LTGFADRIDLLKSGFVDITDYKT---GDNPK 925
                                         L GF D +   + G   + DYK+   G +P 
Sbjct: 1052 APALTALCQQHDPLSRGNKPLSFATVQGMLKGFIDLVFEWQ-GRWYLLDYKSNHLGMSPA 1110

Query: 926  --------KETAQKLIDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQ 967
                    +  A+   D Q  L + AL      ++      +    +FY+ L+ 
Sbjct: 1111 DYSRPALERAMAEHRYDLQYLLYSLALHRLLTLRLPGYDFEQHFGGVFYLFLRG 1164


>gi|126668208|ref|ZP_01739169.1| exodeoxyribonuclease V, beta subunit [Marinobacter sp. ELB17]
 gi|126627357|gb|EAZ97993.1| exodeoxyribonuclease V, beta subunit [Marinobacter sp. ELB17]
          Length = 1241

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 86/823 (10%), Positives = 182/823 (22%), Gaps = 97/823 (11%)

Query: 170  HALKNEKYGMWWLLAADFLKIASKY---WTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
                  ++   W+ A    +   +    + + L  L+ +        L            
Sbjct: 346  AEADILRHSTHWIAARLESEKQKRSEMGFDDLLTRLDDALHGPRGDQLAATIRRQFPVA- 404

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+   +           +L   D       +      +     
Sbjct: 405  ----LIDEFQDTDPVQYRIFDRIYRVAENHPDTCLLMIGDPKQAIYGFRGADIYTYLDAR 460

Query: 284  SNTTYSTHPQYSLAKLLDFL----------------------DIKREDVKRLGNVSNEMY 321
            +     T       +    +                                  V     
Sbjct: 461  TGAHERTWTLGRNFRSSRTMVAAVNRVFEYGDQHSSEGAFLFGKGDASALPFQAVEANGT 520

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI--------- 372
             R    +    P  T     ++  +           +  L  A     E           
Sbjct: 521  KRLWATNGKLQPSLTLWASESENTDKSGNRKGLAKGNATLDVAGTCASEIARLLTLGQQS 580

Query: 373  ----SIAIALRMSLDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHS 427
                ++   L        K  A++  +R  A  V+  L  R   ++ +S    +  +  S
Sbjct: 581  LAGFALETDLSDIEPVEPKDIAILVNNRKEAAAVRDALGQRGIKSVYLSDRDSVLASPES 640

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIM 486
              +   L A  +          +  P     +     L   + ALE    R         
Sbjct: 641  KEVLCWLKAFAEPRQLAYARAALATPTLGLPWAYLDQLLTNEMALEREIERFMGYQQQWQ 700

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
                L + R      +      Q    E      + + + + Q    L       +    
Sbjct: 701  SQGVLPMLRSFLMDFDVPGRLLQRVGGERRLTDILHIAELLQQDSLQLDGEHALVHHFTA 760

Query: 547  NLSISDWTKLTVTCLQNVCLDE---HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
             L  +D      T                 +   E     L    +   E          
Sbjct: 761  ILRAADDEDEHRTLRLESDAGLVKVITIHKSKGLEYPLVFLPFGTAYRAENEKQAFVRYH 820

Query: 604  EWIDIITRLIDGETVKPKIEKSSTL-FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
            +  D +  + D      +      L   +  L   L         G+ E    + +    
Sbjct: 821  DHNDQLITVFDPTPNDVEQADKERLGEDIRKLYVALTRARFATWVGVTEIENWQLSGLGY 880

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY-TRSLRENNIPTIASRWLQRLLV 721
             LS    +  +L  A +         ++A G   L   +            +     L  
Sbjct: 881  LLSGNPAAKHSLSGALQ---------QLAVGHSELFVESLPEATGQHYAEPAPGALGLAR 931

Query: 722  LGGTDFFDNLKKRGQCYLDW----------TRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
                +  ++        L++            + +    Q   +        E      S
Sbjct: 932  ESIREAREDWWIASYSSLEYSGLSGTGIVFASEFEDAESQNLLEEGTHTNDDEDAAILLS 991

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPD--RTDRGTLFHNIITELIKKRINKNTP 829
             S            +   IL+       +   D     R  L     T      ++    
Sbjct: 992  HSLHYFPKGAGPGTFLHDILEWCVQQGLQHLVDNPPLLREQLTRRCSTRGWSDWVDTLEH 1051

Query: 830  EINHLMKQIID----------SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
             I  L++Q +           +  +            R++  +     +       +   
Sbjct: 1052 WILALIRQPLPLGDSGDSTSLASLKTLRPELEFWFESRNVSTRALDKLVTQNTLNGADRP 1111

Query: 880  KIFVNIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYKT 920
            ++          +    +  L GF D +    +G   + DYK+
Sbjct: 1112 RV----------DGGRFNGMLKGFIDLVFEH-NGQYYVLDYKS 1143


>gi|319744909|gb|EFV97242.1| ATP-dependent nuclease subunit A [Streptococcus agalactiae ATCC
           13813]
          Length = 1208

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/589 (9%), Positives = 155/589 (26%), Gaps = 42/589 (7%)

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGST 236
            L   F+   S+ + +  ++ NA          ++   E      L +     +++    
Sbjct: 358 ELLQSFVLDFSEQYLQEKIQENAFEFSDIAHFAIQILEENHDIRQLYQDKYHEVMVDEYQ 417

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS- 295
            +     R++  ++   NG       D       +     +  N       Y  +P    
Sbjct: 418 DNNHTQERMLELLS---NGHNRFMVGDIKQSIYRFRQADPQIFNDK--YKAYQDNPSQGK 472

Query: 296 -------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                       + LD        L +          +  +S      S  +      NK
Sbjct: 473 LIILKENFRSQSEVLDSTNSVFTHLMDEEVGDI----LYDESHQLKAGSPRQQERHPNNK 528

Query: 349 IPNIQKCFSDVALIEADNER-----EEAISIAIALRMSLDE---NKKKSALITADRNLAR 400
              +     +  + ++D+++      EA  +A  +     E     +   L+ + R    
Sbjct: 529 TQVLLLDTDEDDIDDSDSQQYDISPAEAKLVAKEIIRLHKEENVPFQDITLLVSSRTRND 588

Query: 401 RVKLELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
            +     R+GI +    G      ++   ++   L +I    +  A+  L++ P+  F  
Sbjct: 589 GILQTFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNE 648

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
            +      ++       +   + +       L+   ++  K +  +  +Q+         
Sbjct: 649 DDLTRIAIQDVKMAFYHKVKLSYHKEGHHSDLITPELS-SKIDHFMKIFQTWRDFAKWHS 707

Query: 520 AVLLVDHI---LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC-LQNVCLDEHRKLPNL 575
              L+  I         +      +       +++           + +          L
Sbjct: 708 LYDLIWKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVL 767

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             E +   +     +     + +  +  + ++     I     K  +   ++  IL   +
Sbjct: 768 ENENDLADVEVALPQ--NAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQ 825

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
              + +   +   L E + P        L   +      +     + +      +A    
Sbjct: 826 GIGIKYVADMRHELEEEILPAVKVSMETLPYQLNKR---ELRLATLSEQMRLLYVAMTRA 882

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                   + +         L                   Q +L    +
Sbjct: 883 EKKLYLVGKASQTKWADHYDLVS-ENNHLPLASRETFVTFQDWLLAVHE 930



 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 14/148 (9%)

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
            D    G+  H ++  +      K       L +   ++  +       I+  ++      
Sbjct: 1047 DPAALGSAVHELMQRIEMSSHVKMEDIQKALTEVNAETSVKAAIQIEKINYFFQ---ETS 1103

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHLTGFADRIDLLKSGFVDITDYK 919
               +++ E +       +    P  M            + G  D   LL    + + DYK
Sbjct: 1104 LGKYIQEEVEH------LHREAPFAMLKEDPESGEKFVVRGIIDG-YLLLENRIILFDYK 1156

Query: 920  TGDNPKKETAQKLIDPQLSLEAAALKAG 947
            T         ++    Q++L A ALK  
Sbjct: 1157 TDKFVNPLELKERYQGQMALYAEALKKS 1184


>gi|254823035|ref|ZP_05228036.1| exodeoxyribonuclease V, beta subunit [Mycobacterium intracellulare
            ATCC 13950]
          Length = 1100

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 87/899 (9%), Positives = 198/899 (22%), Gaps = 131/899 (14%)

Query: 170  HALKNEKYGMWWLLA--ADFLKIASKYWTERLVELNASSPVGYQIALMRAEA------EH 221
              L+          A    F          R   L           L  A A        
Sbjct: 192  TQLRPRDPDPDSRAAVCLRFANDVLAELDTRKRRLGVLGYDDLLTRLADALATDGSPARL 251

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT------ 275
             M      +++     + P   +++    +    + V+   D       +          
Sbjct: 252  RMHQRWPIVMVDEFQDTDPVQWQVIDRAFS--GRSTVILIGDPKQAIYAFRGGDIVTYLR 309

Query: 276  -EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
              ++     +  T        +A+L   L   +     +       + R   ++ +    
Sbjct: 310  AAQTAGERKTLDTNWRSDSALVARLQVVLRGAQLGDPAIVVNDVGAHHRGHRLAGAPRND 369

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNERE--EAISIAIALRMSLDENKKKSALI 392
                   +     +         ++      +      A+  A A         +  A+I
Sbjct: 370  PFRLRVVSRKTLGRRGIQNLPIDELREHIGADLAADIRALLAAGATFDGEPLQARDIAVI 429

Query: 393  TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                  A      L   G+    +    + T+  +     LL A  + +    +      
Sbjct: 430  VERHRDAHACFKALCAAGVPAVYTGNTDVFTSEAAEDWLCLLEAFDQPHRPGMVRAAAAT 489

Query: 453  PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
                FG   + L+   +AL     +  +        + +     A Q           R 
Sbjct: 490  --MFFGETAQTLAAGGDALTDRIAKTLREWAGHARERGVAAIFEAAQLLGMRDRVLGWRG 547

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
             E        +   + +                G  ++ DW +           +     
Sbjct: 548  GERHMTDLAHVTQLLQEV---------AHREHYGLPALRDWLRRQR-------DERGGAP 591

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
                  +       + +  +  G       + +            +    + +  L + G
Sbjct: 592  ERNRRLDSDAAAVQIMTVFVSKGLQYPIVYLPFAFNRNTQDSDVVLFHDEDGTRCLHVGG 651

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEM 690
                   +F T+   G  E     +      L+R              +  G  +     
Sbjct: 652  KDS---PDFKTVERLGRKEDASDDSRLTYVALTRAQAQVVAWWSPAYFEPNGGLSRLLRG 708

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK-----------RGQCYL 739
                  ++  R          A   L+     GG    D++             R     
Sbjct: 709  RRPGDPVVPDRCEPAKVSDDDALARLREWEAAGGPVIEDSVVAPAPSLPPAPVPRHLDSR 768

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
             + R +D T ++  Y                  + +   + D     +      D     
Sbjct: 769  HFHRAIDTTWRRTSYSGLIRVAQASGVGSEPDVAGLDDEVGDIPL--SSPAAGPDVPSPM 826

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH---FEKENLPPHIDIIW 856
               P     G+L H ++        +    ++   +++ I  H   +     P  +    
Sbjct: 827  ADLPAGATFGSLVHAVLET-----ADPFAADLAAELEEHIREHSAWWPVAATPEELAAAM 881

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH------------------- 897
              +         +     +  +      +  ++ +                         
Sbjct: 882  VPMHDTPLGPLADGLTLRRIGLSDRLRELDFELPLAGGDRPSVGPEVRLADLAPLLRERL 941

Query: 898  --------------------------LTGFADRIDLLKSG---FVDITDYKTG------D 922
                                      LTG  D +  +  G      + DYKT        
Sbjct: 942  PPDDPLVSYADRLTDRALGDQSLRGYLTGSIDAVLRIPDGAGHRFVVVDYKTNLLGDPER 1001

Query: 923  NPKKETAQKL----------IDPQLSLEAAALKAGSFSQI----DCRKVANLFYIRLKQ 967
                    +              Q  L  A L      +I      R +  + Y+ ++ 
Sbjct: 1002 PLSAADYDRPRMAEAMLHSDYPLQALLYCAVLHRFLRWRIRDYDPDRHLGGVLYLFVRG 1060


>gi|239500909|ref|ZP_04660219.1| exonuclease V, beta chain [Acinetobacter baumannii AB900]
          Length = 1232

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 95/904 (10%), Positives = 221/904 (24%), Gaps = 197/904 (21%)

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHL-------MKGTKGPIIIAGSTGSIPAT 242
               K   + L     ++       L +A            ++     I++     +    
Sbjct: 365  EVKKRLPQVLQNKGETTFSQQIRTLSQALKGEQGQRFAVFVQARYPLILVDEFQDTNQDQ 424

Query: 243  ARLMSTVANHPNGA---IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
              +++++  HP       ++   D       +    +  T + +     + H      KL
Sbjct: 425  DDMLASIWRHPERYQKGCMIMVGDRKQAIYGFRG-GDMLTFLNAYKDIQAKH--GREYKL 481

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            +       +    L  V + ++ R +   +               +             +
Sbjct: 482  IHNHRSVAD----LVEVVDALFQRQIDFGEQVQYDPIRAGTRPHPVLIDQNQPNPHP--L 535

Query: 360  ALIEADNEREEAISIAIALRMSLDENK-----------------KKSALITADRNLARRV 402
              +   ++  EA  +A  +R  L+++                     A+++ + +   +V
Sbjct: 536  RWLMLKDKETEAQQVAWKIRDLLNQSHAGQLYFQKDAQTQTLNEDDIAVLSRNHDGLDKV 595

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
            + EL R GI ++  +   +     +  + +LL AI    D                    
Sbjct: 596  QFELERLGIRVNRPSKRSVFDCTIAQDVGALLTAILHPYD-------------------- 635

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                     E    R   +    MDLK L+                              
Sbjct: 636  ---------EAKVKRALISRLFAMDLKQLLQ----------------------------- 657

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLS-ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             ++   + ++  +T              +  W +          L   +   N       
Sbjct: 658  -LEQTAEGLSQFMTGFDTIRELWSAQGFLVAWQQCLNQFGIWKNLVAVQSKDNERVVVNL 716

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLI-DGETVKPKIEKSSTLFILGTLESRLLN 640
            + L+ + S+  E     +     ++  +   +     ++ ++   + + ++   +S+ L 
Sbjct: 717  RHLTEILSQHSEKYQGAQNLYYWYLKQLQSPLDREWELERRLSSEAGVQLMTIHQSKGLE 776

Query: 641  FDTLILGGLNEGVWPKNTAKNP----------------------FLSRVMQSDLNLKTAE 678
            F  + L G ++     N   N                         + + +++L      
Sbjct: 777  FKIVFLLGADKPFRENNKTLNFSTQDITVPESAQTLTQRVVAIADKTYLNETELKQHEER 836

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                Q    +       H +   +L ++      S                   +     
Sbjct: 837  ALAEQNRLWYVALTRASHRV--YALLQDTDGKSVSGLAFWKNRAEPFQHRCCTDEIILEQ 894

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA------RRILK 792
                R L+        +               SFS + Q +                +L 
Sbjct: 895  PPAARHLNQHINIIEIQAQHFPDQRFYSRGKTSFSYLAQHLRHKVGTDLLASQSHEAVLA 954

Query: 793  LDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINHLMKQ 837
             D +         T +               G   H I   +  +  ++   EI    K 
Sbjct: 955  EDELDQVISVETATAQPISWIKSNFPRGTLAGNFLHEIFEHIDFQCSDEWVSEIRRRFKN 1014

Query: 838  IIDSHFEKENL-----PPHIDIIWRHLFHKISHSFLEHE--------EKIQSSIEKIFVN 884
               S ++   +      P        ++H ++    E             Q   E     
Sbjct: 1015 DYSSLWQDLLIKYQESFPEEQEAEYSIYHAVAEWLQEILSTPLYQGFRLNQLQAEHYLSE 1074

Query: 885  IPAKMAIESIGIH--------------------------LTGFADRIDLLKSGFVDITDY 918
             P  +A+    +                           L G  D +         I DY
Sbjct: 1075 CPFYLALSDRVLAMKRIQQLFAEYGMEMPELLEARSARYLNGSIDLVYFDG-QRYHIADY 1133

Query: 919  KTG---------DNPKKETAQKLID--PQLSLEAAALKAGSFSQID----CRKVANLFYI 963
            K+                 +  L     Q  L   AL      ++      + +    Y+
Sbjct: 1134 KSNYLGENLADYSVESIAQSMSLASYWLQAGLYLVALHRYLKVKMQNYDIEQHLGGATYL 1193

Query: 964  RLKQ 967
             L+ 
Sbjct: 1194 YLRG 1197


>gi|254821587|ref|ZP_05226588.1| helicase, UvrD/Rep family protein [Mycobacterium intracellulare
           ATCC 13950]
          Length = 311

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 59/242 (24%), Gaps = 23/242 (9%)

Query: 59  ELRSEFIEITGKKSTIL-PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL 117
            L +  +     +  +  P+++++              + +  P      RL+  A    
Sbjct: 68  ALTTALLRSRPGRVVVSEPLVRTVHGYAYAVLRRAAERAGDAPP------RLVTSAEQDA 121

Query: 118 IWRNKLPDIIKDL--YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
           I R  L   + D      +  +   +  +    A  L +++           +L  L   
Sbjct: 122 IIRELLAGDLDDGPRATSAWPAQLRAALSTAGFATELRNLLARCAERGIDPGELERLGRR 181

Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
                W+ A  F +   +              V    A +   A        G   + G+
Sbjct: 182 CRRPEWIAAGQFARQYEQ--------------VMLLRAAVGTAAPEATTPALGAAELVGA 227

Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
                A    +          +++  +      A        +    +          + 
Sbjct: 228 ALEAFAVDPELLAAERGRIRVLLVDDVQQLDSQAARLVRVLAAGAELALIAGDPNQAVFG 287

Query: 296 LA 297
             
Sbjct: 288 FR 289


>gi|153004222|ref|YP_001378547.1| ATP-dependent nuclease subunit B-like protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027795|gb|ABS25563.1| ATP-dependent nuclease subunit B-like protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 935

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 77/690 (11%), Positives = 158/690 (22%), Gaps = 94/690 (13%)

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
             V+ L  ++       ++                  +             +  + A  E
Sbjct: 130 RRVEALHELAGRREIEVVLGRLEGDGRAPLPAALLASMGRGRAARAVAGGQLLAVAAAGE 189

Query: 368 REEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
             EA + A  +   +++    ++ + +  A R +A  +   L   GI      G  L+  
Sbjct: 190 EGEADAAAHTVARLVEDGVPAEEVAVIAAAPRRVAAPLARALAARGIPFASGRGAGLADL 249

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                    + A       + +  L          P   L    +               
Sbjct: 250 PPVRAALDAIVAAGSPTRAV-VERLAASSYLASAGPGLALGALLDR-------------- 294

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              L        A ++    +    +       E A   ++ +   + PL    T +   
Sbjct: 295 AGALDGRATPLAALRRRAAALRAPAAARERAALERAASGLEELSALLAPLGVAATPREHA 354

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                  D   +     +       R L  L   EE     +    I   G         
Sbjct: 355 RRLGGFLDAAGVRRRAARGPRDLAARDLAALRALEEAADALARGLAIAGRGEARLEAGAW 414

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
              +   +  G    P    +  + + G  E+   +    +L G  EG +P +   +P L
Sbjct: 415 SALLRVAVEGGALPAPPEPAAGAVELWGLDEAPGFSIHAAVLMGCAEGAFPPSAPPDPLL 474

Query: 665 SRVMQ-------SDLNLKTAEKYIGQAAHDFEMANGTRHLIY------------------ 699
               +         + + TA     +A H    A      +                   
Sbjct: 475 RDPERIALARQVRRVAVPTAAARRAEAQHRALCAVAAGREVLAFVWAAPGPSGRGGSLAP 534

Query: 700 ---------------TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                            +           R   R  V  G      L             
Sbjct: 535 VLADALAVLGVPVSPVAAPEPGLAAARTEREALRAAVRAGATGVAALAGTTLARRAQAAL 594

Query: 745 ---------------LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                                      P         P  ++ ++++     P+ ++   
Sbjct: 595 DLGAVEASRGEALRGRRAAPYAGAISGPAGDALRAMLPAEWAPTQLEGYARCPFRLFLHS 654

Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-----------PEINHLMKQI 838
             +L        D +  D G+L H  +   +  R  +                       
Sbjct: 655 AARLPDPAAGDLDQEPRDEGSLLHAALERFVAARRARGAWPPAGDAADVAEAQAAAEAVF 714

Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA---------KM 889
           +    E     P +    R          ++ E +    +    +             ++
Sbjct: 715 LRFEAEGRTGDPAVWAARREAVLARIARVVQAEARDHDGLVPALLEHRFGGTSGNPPLEV 774

Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYK 919
                 + L G  DR+D      + + DYK
Sbjct: 775 RASGETVRLQGRIDRVDASGE-RLLVIDYK 803


>gi|215429463|ref|ZP_03427382.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis EAS054]
 gi|260199635|ref|ZP_05767126.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis T46]
 gi|289442022|ref|ZP_06431766.1| exodeoxyribonuclease V, beta subunit [Mycobacterium tuberculosis
           T46]
 gi|289752672|ref|ZP_06512050.1| exonuclease subunit V beta [Mycobacterium tuberculosis EAS054]
 gi|289414941|gb|EFD12181.1| exodeoxyribonuclease V, beta subunit [Mycobacterium tuberculosis
           T46]
 gi|289693259|gb|EFD60688.1| exonuclease subunit V beta [Mycobacterium tuberculosis EAS054]
          Length = 1094

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 90/823 (10%), Positives = 176/823 (21%), Gaps = 125/823 (15%)

Query: 185 ADFLKIASKYWTER---LVELNASSPVGYQIALMRAE---AEHLMKGTKGPIIIAGSTGS 238
             F     +    R   L     +  +      + A    A   M+     +++     +
Sbjct: 208 LRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPARDRMRERWRIVLVDEFQDT 267

Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT---EKSTNITSSNTTYSTHPQYS 295
            P   R++    +  +  I++   D       +             T+           S
Sbjct: 268 DPMQWRVLERAFSRHSALILI--GDPKQAIYGFRGGDIHTYLKAAGTADARYTLGVNWRS 325

Query: 296 LAKLLDFLDIKRED------------------VKRLGNVSNEMYGRSMVISKSFLPPDTS 337
              L++ L     D                    RL +       R  V+ +  L  D +
Sbjct: 326 DRALVESLQTVLRDATLGHADIVVRGTDAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGT 385

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397
                + L   IP+         L          +  A              A+I     
Sbjct: 386 AHVPIEALRRHIPDDLAADVAALLASGATFAGRPVVAA------------DIAVIVEHHK 433

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            AR  +  L   GI    +    +  +  +     LL A         +          F
Sbjct: 434 DARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSGLVRAAACT--MFF 491

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G   + L+   +AL        +   D    + +     A Q           R  E D 
Sbjct: 492 GETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVLSQRGGERDL 551

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                +   +         ++       G   + DW +                   L  
Sbjct: 552 TDLAHIAQLL---------HEAAHRERLGLPGLRDWLRRQAKA----GAGPPEHNRRLDS 598

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
           +     + ++F         ++   +       R +  + +    +  +    +G  +  
Sbjct: 599 DAAAVQIMTVFV-----AKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIG-GKDG 652

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEMANGTR 695
                T+      E            L+R           T ++  G  +          
Sbjct: 653 GAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLL-RGRRPG 711

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD-----------NLKKRGQCYLDWTRK 744
                           A     +    GG    +            +   G     + R+
Sbjct: 712 QSQVPDRCTLRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRR 771

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
           +D T               EA   T   +   +      AV A      D        P 
Sbjct: 772 IDTT--WRRTSYSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPS 829

Query: 805 RTDRGTLFHNIITELIKKRINKN--TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
               G+L H ++        +                    +   L P +      +   
Sbjct: 830 GASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDT 889

Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH------------------------- 897
                       Q  +      +  +M +    +                          
Sbjct: 890 PLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPL 949

Query: 898 --------------------LTGFADRIDLLKSGFVDITDYKT 920
                               L G  D +  L      + DYKT
Sbjct: 950 SPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKT 992


>gi|285016846|ref|YP_003374557.1| exodeoxyribonuclease V subunit beta [Xanthomonas albilineans GPE
            PC73]
 gi|283472064|emb|CBA14571.1| probable exodeoxyribonuclease v beta chain protein [Xanthomonas
            albilineans]
          Length = 1221

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 70/720 (9%), Positives = 163/720 (22%), Gaps = 26/720 (3%)

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
              +     G +                     +         + + Q    +      I 
Sbjct: 444  QAIYGFRGGDVHTYLSAVTNAEQAPPLDHNFRSRPALLAAIDALYAQAGYTQAFFIDGID 503

Query: 307  REDVKRLG--NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
               V+  G    S+         + +        +              +     A + A
Sbjct: 504  FHPVQPGGRRADSDLQRDDRCAPALTLWRAPDPPLPAKGKPRPWSAGRARELCTAACVAA 563

Query: 365  DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
              +   A     AL           A++    + A R++  L   GI    +    L  +
Sbjct: 564  IGDWLGAGRAGTALVDGRAVQPADIAVLVRSHSDATRIQQALAAVGIPAVAAGKPSLFAS 623

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA---KNALELVALRGNKN 481
              +  L +LL+++    D   +   +   L                ++          + 
Sbjct: 624  EEALELMALLHSLLDPGDDSRLRAALATVLIGEDAAAIAALDHDGERHRRWQQQALDWRE 683

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP--LVTYKT 539
             +      +L+    +T            R      +LA LL +     + P  LV +  
Sbjct: 684  RWQRGGPLALIEHLGSTNAQRLLALVDGERRLSNYLQLAELLQEAHTHALGPHGLVDWLA 743

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
             + +       +   +L     +   +  H+     +       +      + +      
Sbjct: 744  RRIAASNANDDTQLLRLESDARRVQIITLHKSKGLEYPLVFLPYVGIGQKPLTQKPGERV 803

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                +    +   +  + V+ +  K +        ++RLL                    
Sbjct: 804  IVHRQGKRCLHWPLHVDAVEWEASKRAWEHAQRAEDARLLYVGLTRAEHALWIATGPFFR 863

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHD-----FEMANGTRHLIYTRSLRENNIPTIASR 714
             +      M SD++   +         D               ++    R      +A  
Sbjct: 864  HDTTALAPMLSDIDALQSRISAEILMFDTRPPPHPPRLPPAEALHVPPARTPTRKLVAEW 923

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            W+     L   D   +            R         +                +  + 
Sbjct: 924  WVYSFTQLANADAGTDPMASTTVASRGGRDEPTAADTVNAAAEVEIIDRRFVGNRFGVAM 983

Query: 775  IKQLINDPYAVYARRILK-LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
             +      +A +          +       +   RG        + +       T  + H
Sbjct: 984  HEVFERCDFAAWRDWRPGQPAPVGQHNAIVEALQRGGYA----EDELTDGSALLTSLVGH 1039

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
             +   +        LP             +  + ++    +                   
Sbjct: 1040 TLTVPLPESICLAVLPQTQRRNEMEFHFAMRPTRVDALLTLLHRFGVAGERQAFGARQRL 1099

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDPQLSLEAAALKA 946
             G+ +TG  D +    +G   + DYK+   P           A      Q  +   AL  
Sbjct: 1100 EGL-MTGLID-LTYHHAGRWYVLDYKSNRLPSYDPDALATAMAHSEYTLQALIYTVALHR 1157


>gi|332666641|ref|YP_004449429.1| hypothetical protein Halhy_4722 [Haliscomenobacter hydrossis DSM
           1100]
 gi|332335455|gb|AEE52556.1| hypothetical protein Halhy_4722 [Haliscomenobacter hydrossis DSM
           1100]
          Length = 896

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/381 (12%), Positives = 105/381 (27%), Gaps = 22/381 (5%)

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
              +     +++T    + + +E   I+  + +   ++  + +  +   +    +     
Sbjct: 410 AEQAKQIVDLLQTLPEKELSRLELERIVRTVYEPAPMQLNLREIGSFPYVQQPNALCAPI 469

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA----NGTRHL 697
             LI     +       ++     R     LN+         A   F+           L
Sbjct: 470 RELIWWNFTQNEPDYFFSRWYDHERGWLQQLNIPLNSPADQNALLGFQRRHPVWMTQHRL 529

Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGG------TDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
           I            +    L  L    G          + L  R     +          +
Sbjct: 530 ILVIPEVAEGSTMLPHPLLGDLEACFGSLEHITATDENQLLGRYFDLPEKVLIPFRRLGK 589

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
           P        P         +F+ ++ L+  PY    R  ++L          D T +G L
Sbjct: 590 PAPFLRLNHPEKLTDRAEETFTSLESLLYYPYQWLFRYHIRLRKSSILSIVKDSTLQGNL 649

Query: 812 FHNIITELIK--KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS--F 867
            H     L+      + +  E++  +++  +    +E     +         +      F
Sbjct: 650 AHRFFQNLLLIPDLSSWSKAEVDQWIERESERLLHREGAVLLMYGKEAER-KRFLKRLKF 708

Query: 868 LEH---EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT-GDN 923
                      +        +  +      GI L   AD + L +     + D K  G  
Sbjct: 709 AAWSLVNLLQNNQWSVAATELGLEGNF--GGIQLNARADLV-LSREAEQTVLDLKWRGGL 765

Query: 924 PKKETAQKLIDPQLSLEAAAL 944
            ++   +   D QL+L A  L
Sbjct: 766 RRELMIKNEEDLQLALYAHLL 786


>gi|253576950|ref|ZP_04854274.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843681|gb|EES71705.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 226

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 54/177 (30%), Gaps = 37/177 (20%)

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
           YS+S +      PY  Y + IL                 G   H  I   I         
Sbjct: 3   YSYSRLSLYETCPYRFYQKYILGKKEPVT-----KPLALGKAVHKAIELKINGV-----S 52

Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
           E   +++ II+S F  E                     +    +    +      +   +
Sbjct: 53  EHEAIIEAIIESDFHPEVTYEE----------------IASLVQRAPEVR-GQTEVHFVL 95

Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            +   GI L G+ D   LL+       D+K+   P +    +    QL+L A A+  
Sbjct: 96  PLGD-GIQLQGYID---LLEEERFW--DWKSNWRPYRANDTR----QLALYAWAIMK 142


>gi|193212683|ref|YP_001998636.1| exodeoxyribonuclease V subunit beta [Chlorobaculum parvum NCIB 8327]
 gi|193086160|gb|ACF11436.1| exodeoxyribonuclease V, beta subunit [Chlorobaculum parvum NCIB 8327]
          Length = 1199

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 104/893 (11%), Positives = 216/893 (24%), Gaps = 126/893 (14%)

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
            +E    L++E       L ++ +    K   ER  E N          L  A A+     
Sbjct: 304  FEACERLQSEADERLLALKSELVTFYRKRLPERKKEGNIRFFDDLLTDLYHALADGPEAA 363

Query: 226  --------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                         +I     + P    +   +    + A +    D       +      
Sbjct: 364  TLAEALRTRYKAALIDEFQDTDPVQYDIFRRIYATSD-APLFLIGDPKQAIYSFRGADIF 422

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK---SFLPP 334
            +    +S+       +++L           +   RL + + + +    + S    +    
Sbjct: 423  AYFHAASDVGEER--RFTLNTNWRSTPKLLDGFNRLFDHARQPFVFDGIPSPPLVAGRVI 480

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS--IAIALRMSLDENKKKSALI 392
              S++     LE  + +       +   +A     +A +  +A  +R   D +    A+I
Sbjct: 481  PESELTCKPPLELCLLDGGDGDGSLKSGDATQFAADACASMVAETIRDGADASG--IAVI 538

Query: 393  TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                  AR ++  L + GI   + +   + T++ +  +  L+ A+ +      +   +  
Sbjct: 539  VRTHRQARLMQATLRKAGIVSVMRSDESVFTSVEAEEVRILVTALAEPGRETLVRAALVT 598

Query: 453  PLAK------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            PL          F +   + A    E             M +   ++ R   ++      
Sbjct: 599  PLFGLNGSDIARFNDDENALAARLQEFRDYHRLWRERGFMVMARELMRREGVRERLLATA 658

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                             + ++L C   L  ++       G  S+  W    V   +    
Sbjct: 659  EASG----------ERALTNVLHCFELL--HREAHARGLGMESLVAWFSERVATRET--- 703

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI------DIITRLIDGETVKP 620
                    L  +E    + +           +               ++     G  V+ 
Sbjct: 704  -GEEYQIRLESDEPAVKIITAHVSKGLQYPVVFCPFQFVRGGDKDDVVLCHDDAGRMVRD 762

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
                S            L     L    L              +           T   Y
Sbjct: 763  FGSASIAHHRTLAARETLAENLRLFYVALTRAEQRCIFFTARIVDGRKSGKPPQLTPASY 822

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
            +  A+ D      +  +               +  LQ L               G  +  
Sbjct: 823  LLYASDDAR--KSSDPVADATGELSVIGVNTMAGRLQVLADESDGAIQVKRLTLGDDFRV 880

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                 + T +     R +    LE   R  SF+ + +  +  + +  R            
Sbjct: 881  SVPLSESTERPELVLR-EFRKILETDWRIASFTTLSRHKHMAFELPDRDESAPSEPAAPL 939

Query: 801  KDPDR----------TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
              PD              G L H+I   L          +        ID          
Sbjct: 940  ALPDAERSIFAFPKGAGAGILMHSIFETL----------DFVSASDADIDEACATALDRY 989

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSI--------EKIFVNIPA--------------- 887
              D  W+     +    L       + +        +  F  +                 
Sbjct: 990  GFDEEWQPALTGMVRQVLATPLSSPNGLFTLGNLKKQAWFTELEFFFPLKRITAPELAKL 1049

Query: 888  -------------KMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
                            ++++        L GF D +     G   + D+K+         
Sbjct: 1050 LVRHGIIPAGADPAATLQALDFAPVKGMLMGFMDMVFE-AQGRFWLLDWKSNHLGNSVEE 1108

Query: 930  QK-----------LIDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQ 967
             +           L   Q  L   AL      ++             Y+ L+ 
Sbjct: 1109 YRREQLDRAMQDNLYHLQYLLYTVALDRYLSLRVPDYRYETHFGGAIYVFLRG 1161


>gi|188534866|ref|YP_001908663.1| exonuclease V subunit beta [Erwinia tasmaniensis Et1/99]
 gi|188029908|emb|CAO97792.1| Exodeoxyribonuclease V beta chain [Erwinia tasmaniensis Et1/99]
          Length = 1178

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 85/822 (10%), Positives = 194/822 (23%), Gaps = 104/822 (12%)

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            + D I+    +   L  L           A   ++  ++       +L     +G   A 
Sbjct: 308  LFDRIDDFLAEPLSLRDLVI-------ARALQQVRFVTQQEKRLHAQLGFDDLLGRFDAA 360

Query: 215  MRA----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
            ++          ++      +I     + P   R+  T+     G+ +L   D       
Sbjct: 361  LQQPGGEMLASAIRQRYPVALIDEFQDTDPQQYRIFRTLYRRQPGSALLLIGDPKQAIYA 420

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
            +      +     S  +      Y+L           + V +L       +  S +    
Sbjct: 421  FRGADIFTYMKARSEVSAH----YTLETNWRSSPAMVDGVNQLFLKQKNPFLFSEIPFVH 476

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFS-----DVALIEADNEREEAISIAIALRMSLD-- 383
              P   +D    ++     P +           V+  +    R+ A  I   L       
Sbjct: 477  IKPAAPNDSLKFNVQGEVQPALTFWLQPGDGVGVSDYQQFMARQCAAEICRWLSAGQRGE 536

Query: 384  -----------ENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILT 431
                              ++   R+ A  ++       I  + +S    + TT  +  + 
Sbjct: 537  ALIGKAGKQRPVQASDITVLVRSRSEAAVMREAFNALTIPSVYLSNRDSVFTTPEAREML 596

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
             LL A+        + + +   L                     +    +       + +
Sbjct: 597  WLLQAVLAPEQERILRSALATSLFGVDALALDALTQDERAWDALVDEFVDYRQRWLKRGV 656

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDK-ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            +              +  +  S E +    + L + + +    L +           +  
Sbjct: 657  LPMLRELMMKRAIAENLLASDSGERRLTDLLHLGELLQEASATLDSEHALVRWLAQQVEQ 716

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFE--EEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             D                 + +     +  +         +   E  + +  +   +  +
Sbjct: 717  PDGQVANQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFVANFREADNAVYHDRQTFTAL 776

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            +      E+++               + RL     L+   L   V+  +    P +    
Sbjct: 777  LDLQQSEESIEL------------AEQERLAEDLRLLYVALTRSVFHCSVGIAPLIKGTR 824

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
            + + N       +G                      +   P  AS  L  L  L      
Sbjct: 825  KKEGNSDLHRSALGYLV-------------------QQGEPADASGLLAALQALNSDATA 865

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY-----SFSEIKQLINDPY 783
                           + +            P         +      S   ++ L     
Sbjct: 866  LVTAAEADAAPWQGPQAERQILSSRALPRSPRDSWRVTSYSGLQQHGSAGALELLPRLDV 925

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------------IKKRINKN 827
                    +   +      P     GT  H +   L                 +    + 
Sbjct: 926  DAAGEASGEQVPLLTPHTFPRGAGPGTFLHGLFETLEFSAPLDEEWLSQQLSGQGLGEEW 985

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI----SHSFLEHEEKIQSSIEKIFV 883
            TP +   + +I+ +   +  +  H                    L  E   +   +    
Sbjct: 986  TPVMRDWIDRILQTPLNETGVSLHQLPAQARRVELQFYLPISRLLTAEALDRVVRQD--- 1042

Query: 884  NIPAKMAIESIGI-----HLTGFADRIDLLKSGFVDITDYKT 920
              P  MA   +        L GF D +   + G   + DYK+
Sbjct: 1043 --PLSMACPPLDFYQVQGMLKGFIDLVFCWQ-GKYYLLDYKS 1081


>gi|37521314|ref|NP_924691.1| hypothetical protein glr1745 [Gloeobacter violaceus PCC 7421]
 gi|35212311|dbj|BAC89686.1| glr1745 [Gloeobacter violaceus PCC 7421]
          Length = 269

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 76/244 (31%), Gaps = 25/244 (10%)

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
            A+P + S + +K  +   YA    +I+K+               G   H ++ +L+++  
Sbjct: 7    ARPLSLSPTALKLYVRCAYAYALDKIVKVPGYRRIIAA--HLHTGRAVHTVLEQLVRQEQ 64

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             +    ++ L +      +             R        +++        + E++ V 
Sbjct: 65   IRPEDAVSSLERTFSWGAYTDRQTAEAAFQTARARL----DAWVGTPYG-WGAGEQLAVE 119

Query: 885  IPAKMA------IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
               +             + L G  D + +   G +++ D+K+G       A K  D Q +
Sbjct: 120  KMLRTRPRPLGSASIGSVVLIGKPDLVRVDPEGTLEVVDHKSGKPGDGVEALK-RDFQAA 178

Query: 939  LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
            +     +     +        + +  L     I      ++        E   + L+ + 
Sbjct: 179  IYRILAE----ERWPDYSAYRVSFSYLATGTVIGLTYTREE-------VEDWWQALLTVA 227

Query: 999  TLLQ 1002
              + 
Sbjct: 228  ERIA 231


>gi|308376460|ref|ZP_07438909.2| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu008]
 gi|308351040|gb|EFP39891.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu008]
          Length = 1106

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 84/811 (10%), Positives = 177/811 (21%), Gaps = 101/811 (12%)

Query: 185  ADFLKIASKYWTER---LVELNASSPVGYQIALMRAE---AEHLMKGTKGPIIIAGSTGS 238
              F     +    R   L     +  +      + A    A   M+     +++     +
Sbjct: 220  LRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPARDRMRERWRIVLVDEFQDT 279

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT---EKSTNITSSNTTYSTHPQYS 295
             P   R++    +  +  I++   D       +             T+           S
Sbjct: 280  DPMQWRVLERAFSRHSALILI--GDPKQAIYGFRGGDIHTYLKAAGTADARYTLGVNWRS 337

Query: 296  LAKLLDFLD-IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
               L++ L  + R+      ++            +    P  +  R   +  + +     
Sbjct: 338  DRALVESLQTVLRDATLGHADIVVRGTDAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGT 397

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITADRNLARRVKLELTRF 409
                +  +      + A  +A  L        +       A+I      AR  +  L   
Sbjct: 398  AHVPIEALRRHIPDDLAADVAALLASGATFAGRPVVAADIAVIVEHHKDARACRNALAEA 457

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            GI    +    +  +  +     LL A         +          FG   + L+   +
Sbjct: 458  GIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSGLVRAAACT--MFFGETAESLAAEGD 515

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
            AL        +   D    + +     A Q           R  E D      +   +  
Sbjct: 516  ALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVLSQRGGERDLTDLAHIAQLL-- 573

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                   ++       G   + DW +                   L  +     + ++F 
Sbjct: 574  -------HEAAHRERLGLPGLRDWLRRQAKA----GAGPPEHNRRLDSDAAAVQIMTVFV 622

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                    ++   +       R +  + +    +  +    +G  +       T+     
Sbjct: 623  -----AKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIG-GKDGGAQRRTVEGLNR 676

Query: 650  NEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
             E            L+R           T ++  G  +                      
Sbjct: 677  VEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLL-RGRRPGQSQVPDRCTPRV 735

Query: 708  IPTIASRWLQRLLVLGGTDFFD-----------NLKKRGQCYLDWTRKLDYTTKQPHYKR 756
                A     +    GG    +            +   G     + R++D T        
Sbjct: 736  TDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTT--WRRTSY 793

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                   EA   T   +   +      AV A      D        P     G+L H ++
Sbjct: 794  SDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAVL 853

Query: 817  TELIKKRINKN--TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
                    +                    +   L P +      +               
Sbjct: 854  ETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTLR 913

Query: 875  QSSIEKIFVNIPAKMAIESIGIH------------------------------------- 897
            Q  +      +  +M +    +                                      
Sbjct: 914  QIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAGL 973

Query: 898  --------LTGFADRIDLLKSGFVDITDYKT 920
                    L G  D +  L      + DYKT
Sbjct: 974  GDQPLRGYLAGSIDVVLRLPGQRYLVVDYKT 1004


>gi|312863341|ref|ZP_07723579.1| ATP-dependent nuclease subunit A [Streptococcus vestibularis F0396]
 gi|311100877|gb|EFQ59082.1| ATP-dependent nuclease subunit A [Streptococcus vestibularis F0396]
          Length = 1217

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/594 (9%), Positives = 145/594 (24%), Gaps = 31/594 (5%)

Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGP 229
           +       L   F+   S  + +  ++ NA          +R   E+       +     
Sbjct: 355 DDILPLLELLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEENPEVAVRYRDRYHE 414

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
           +++     +     R++  ++   NG       D       +     +  N         
Sbjct: 415 VMVDEYQDNSHTQERMLELLS---NGYNRFMVGDIKQSIYRFRQADPQIFNGKFQLFL-- 469

Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
            +P      LL      + +V    N          +    +         +    E   
Sbjct: 470 ENPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSEKQKEPHP 529

Query: 350 PNIQKCFSDVALIEADNEREEAI-------SIAIALRMSLDENKK-----KSALITADRN 397
            N  +     +   +    EE          I++ ++  +  +++        L+   RN
Sbjct: 530 ENETEVLIYNSDEASVTPDEEGADQPISSGEISLVIKEIIKLHEQGVRFEDITLLAPTRN 589

Query: 398 LARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
               +       GI +           +L   I+   L AI    +  A+  L++ P+  
Sbjct: 590 TYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALVALLRSPMFN 649

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
           F   +     A    +         ++    L   V+ +    K                
Sbjct: 650 FNEDDL-ARIAVQDDKGQFYDKLLAAHTKSGLHPEVVTQGLDTKLTLFTETLVDWRDYSK 708

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                 L+  I           +   +     ++           +       R +  + 
Sbjct: 709 WHSLYDLIWKIYDDRFYYDYVGSLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMID 768

Query: 577 FEEEGKTLSSLFSKIIE--TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                       + ++     S +  +  + ++     +     K        L     +
Sbjct: 769 KIISSGNDLEEVADLVPKNAVSLMTIHKSKGLEFKYVFVLQMNRKFIGHSKDGLS-GKYI 827

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            +R        L  L + V       N  L  +   +   +     I +      +A   
Sbjct: 828 INREKGLGIKYLADLKDQVNTNLPKLNVVLETLTFQENRREERRASISEEMRLLYVAMTR 887

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                   + + +   +  ++   +            + +   Y DW   LD  
Sbjct: 888 AEKKL-YLVGKGSKEKLTQQFGTDVENNRLPVAL---RDQIATYQDWVMALDTA 937



 Score = 40.7 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 46/149 (30%), Gaps = 17/149 (11%)

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                  G+  H ++  LI      +       + Q +      + +   +         K
Sbjct: 1057 VTGAAVGSATHELMQRLIL-----SDTVTLQDLTQALSRVSADDQVKARVQ------LEK 1105

Query: 863  ISHSFLEHEEKI-QSSIEKIFVNIPAKMAIESI----GIHLTGFADRIDLLKSGFVDITD 917
            +   F     K+   +  K+    P  M  E         + G  D   LL+   + + D
Sbjct: 1106 LLGFFDTELGKLILVNRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLED-RIVLFD 1164

Query: 918  YKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            YKT         ++    Q+SL A AL  
Sbjct: 1165 YKTDHFTYPSEIKERYTGQMSLYAKALSQ 1193


>gi|238751084|ref|ZP_04612580.1| hypothetical protein yrohd0001_2170 [Yersinia rohdei ATCC 43380]
 gi|238710774|gb|EEQ02996.1| hypothetical protein yrohd0001_2170 [Yersinia rohdei ATCC 43380]
          Length = 381

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 55/202 (27%), Gaps = 27/202 (13%)

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
           + R    S++   +  P        L              T  G++ H ++    KK   
Sbjct: 6   RTRPVLPSKLGVFVACPLRYLLESELHTLQCLPLHPR---TILGSVVHRLVN---KKGAR 59

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSI--EK- 880
             +  +   ++    S     +    +            +       E+   ++      
Sbjct: 60  GTSTAMIGQLENTFISAINSTHRVGPLTEWILKRHGVAGLISRQTLLEQIRYANSLTTPS 119

Query: 881 IFVNIPA---------------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925
           +                     +  + S+  +++G AD I  +    + I D+KTG    
Sbjct: 120 VEREKYFPDSPEKCENHIPVGREQPLTSVRFNMSGRADLIYQIAPDQLRIVDFKTGKVTD 179

Query: 926 K-ETAQKLIDPQLSLEAAALKA 946
                +     Q++     +K 
Sbjct: 180 APNQPKDHYLLQVAAYGMMVKE 201


>gi|254037871|ref|ZP_04871929.1| exodeoxyribonuclease subunit V beta [Escherichia sp. 1_1_43]
 gi|226839495|gb|EEH71516.1| exodeoxyribonuclease subunit V beta [Escherichia sp. 1_1_43]
          Length = 1180

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 105/941 (11%), Positives = 228/941 (24%), Gaps = 162/941 (17%)

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            + + I+    +   +  L           A   ++        R  EL     +    + 
Sbjct: 309  LFEAIDQLLAEPLSIRDLVIT-------RALAEIRETVAREKRRRGELGFDDMLSRLDSA 361

Query: 215  MRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
            +R+E        ++      +I     + P   R+   + +H     +L   D       
Sbjct: 362  LRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYA 421

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEMYGRSMVISK 329
            +      +     S      H  Y+L         +     K      +    R +    
Sbjct: 422  FRGADIFTYMKARS----EVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIP 477

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
                     +R     E +           +    D +   A   A  +R  L   ++  
Sbjct: 478  VKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGE 537

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            AL+                     +     P+  +  S ++ S   A           TL
Sbjct: 538  ALLM--------------------NGDDARPVRASDISVLVRSRQEAAQVR----DALTL 573

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL---DRIATQKNNTHVP 506
            ++ P       +      +    L  L+          L+S +      +      T   
Sbjct: 574  LEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
               +     ++      +      +  L    + +N     L+ +   +     L    L
Sbjct: 634  DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISEL 693

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
             +             + LS    +     S  +        +                  
Sbjct: 694  LQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL------------------ 735

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-------NLKTAEK 679
             + I+   +S+ L +  + L  +      +    +   S     DL       +L  AE+
Sbjct: 736  -VQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAER 794

Query: 680  YIGQAAHDFEMANGTRHLI------YTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLK 732
                    +     +            R   +    T +    L RLL  G       L+
Sbjct: 795  LAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLR 854

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND-----PYAVYA 787
               +   D     D   +       +P+   +      +   +++L  D      Y+   
Sbjct: 855  TCIEALCD----DDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQ 910

Query: 788  RRILKLDFIPHFKKDPDRTDR--------------------GTLFHNIITE--------- 818
            +R   +      + D D                        GT  H++  +         
Sbjct: 911  QRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP 970

Query: 819  -----------LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID-----IIWRHLFHK 862
                          +     T  I  +++  ++      +     +       +  +   
Sbjct: 971  NWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPIIEP 1030

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYKT 920
            +  S L+   +    +            +E + +   L GF D +   + G   + DYK+
Sbjct: 1031 LIASQLDTLIRQFDPLS------AGCPPLEFMQVRGMLKGFIDLVFRHE-GRYYLLDYKS 1083

Query: 921  ---GDNPKK--------ETAQKLIDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRL 965
               G++                  D Q  L   AL      +I           + Y+ L
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFL 1143

Query: 966  KQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
            +   K                       LI ++  +  G  
Sbjct: 1144 RGVDKEHPQQGIYTTRPN--------AGLIALMDEMFAGMT 1176


>gi|298292379|ref|YP_003694318.1| UvrD/REP helicase [Starkeya novella DSM 506]
 gi|296928890|gb|ADH89699.1| UvrD/REP helicase [Starkeya novella DSM 506]
          Length = 690

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 77/744 (10%), Positives = 186/744 (25%), Gaps = 133/744 (17%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE-- 86
           TL     +  +N      + +   ++RA  E+      I      + P    L + +   
Sbjct: 46  TLAHRVAHLIVNGADPRRIMLLTFSRRAAAEMTRRVERIAAH--VLGPNAAVLTEGLTFA 103

Query: 87  -------EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
                   +   D  +   L+P  +   R    A LI + R++L     +    +  +L 
Sbjct: 104 GTFHGVGARLLRDYAVQIGLDPNFTIHDREDS-ADLINLVRHELGFSRTEKRFPAKGTLI 162

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
              + A+   + L ++I                        W      L  A     +R 
Sbjct: 163 AIYSRAVNAEQPLEEVIGRAFPWCAG---------------WNAELKALFAAYVEAKQRQ 207

Query: 200 VELNASSPVGYQIALM-RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
             L+    + Y   ++        + G    ++I     +    A ++  +   P+G  +
Sbjct: 208 NVLDYDDLLLYWAQMVGEPSIAADLAGRFDHVLIDEYQDTNRLQASILLGLK--PDGRGL 265

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               D       +   T ++      + +                             + 
Sbjct: 266 TVVGDDAQSIYSFRAATVRNILDFPGHFSPR-------------------------ADTV 300

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            +              +       +     + + +       L+   +E E+A  +A  +
Sbjct: 301 MLEQNYRSSQPILAAANAVIDFAAERYAKNLWSDRASTERPILVSVRDEIEQANFVATRI 360

Query: 379 RMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             + ++    K  A++    + +  +++ELTR  I      G+    + H   + + L  
Sbjct: 361 LENREDGIALKSQAVLFRAAHHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDVLAALRF 420

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           +    D +A   +++                                    L   +    
Sbjct: 421 VENPRDRVAGFRVLR------------------------------------LLDGLGPAT 444

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI-SDWTK 555
           A +  +          + E               +  +   K       G L +   W +
Sbjct: 445 AGRILDEVATSDALVPALEGFAPPARTAQDWPAFLAMISELKGKAAGWPGELDLVWQWYE 504

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
             +  L          L  L     G      F       + +  +  +           
Sbjct: 505 PLLERLHEDAASRQADLVQLAQIAGGYASRERF------LTELTLDPPDAT--------S 550

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
               P       + +     ++   +  + +  + +G  P               DL + 
Sbjct: 551 AEAGPPHLDEDYVILSTIHSAKGQEWKKVFVLNVVDGCIPI--------------DLGVG 596

Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
           T ++   +    +      +  ++           +  R+        G       + R 
Sbjct: 597 TKDEIEEERRLLYVAMTRAKDSLHL---------MVPQRFFTHGQAARGDRHVYAARTRF 647

Query: 736 QCYLDWTRKLDYTTKQPHYKRPKP 759
                  R     T  P     +P
Sbjct: 648 IPPTILNR--FAATSWPPAAPAEP 669


>gi|239929059|ref|ZP_04686012.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 374

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/317 (13%), Positives = 79/317 (24%), Gaps = 34/317 (10%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFTADLLLSYN 98
            V     T +A  EL     +   K     P +       G+ V      F   LL  + 
Sbjct: 65  QVLGLTFTNKAAGELAERVRKALIKAGVTDPDVIDPDNPPGEPVISTYHAFAGRLLTDHG 124

Query: 99  LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
           L   +    RLL  A    +    L +         P   P    +   L  +L  +   
Sbjct: 125 LRIGLEPSSRLLADATRYQLAARVLREA--------PGPYPALTRSFPDLVGDLLALDAE 176

Query: 159 IETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYWTERLVELN 203
           +     + EDL A   E                       A   L      +     E +
Sbjct: 177 LAEHLVRPEDLRAHDAELLRTLENTRLTNAELRKVPEAAAARRELADLVLRYRAAKRERD 236

Query: 204 ASSPVGYQIALMRAEA----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                       R  A       ++     +++     +  A   L++ +  H  G  V 
Sbjct: 237 LLDFGDQIALSARLAAVPEVGRALRDEFHVVLLDEYQDTSVAQRVLLAGLFGHGTGHPVT 296

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D       W   +  + +    +  ++     +   L +        +     ++  
Sbjct: 297 AVGDPCQAIYGWRGASVANLDDFPEHFAHADGRPATRQSLSENRRSGGRLLDLANGLAEP 356

Query: 320 MYGRSMVISKSFLPPDT 336
           +  R   +      P  
Sbjct: 357 LRARLEGVEALRPAPGA 373


>gi|168231088|ref|ZP_02656146.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CDC 191]
 gi|194468697|ref|ZP_03074681.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CVM29188]
 gi|194455061|gb|EDX43900.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CVM29188]
 gi|205334551|gb|EDZ21315.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CDC 191]
          Length = 1181

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 96/898 (10%), Positives = 211/898 (23%), Gaps = 151/898 (16%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGS 238
             A   ++        R  EL     +      +R+E        ++      +I     +
Sbjct: 330  RALSEIRETVAQEKRRRGELGFDDMLSRLDTALRSESGEALAAAIRTRFPVAMIDEFQDT 389

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
             P   R+   +  H     +L   D       +      +     S  +      Y+L  
Sbjct: 390  DPQQYRIFRRIWRHQPDTALLLIGDPKQAIYAFRGADIFTYMKARSEVSAH----YTLDT 445

Query: 299  LLDFL-DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                   +     K    +++    R +  S     P    ++       +         
Sbjct: 446  NWRSAPGMVNSVNKLFSQMNDAFMFRDIPFSPVKFAPRNQSLQFKVNDAPQPAMTLWLME 505

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
              +    D +   A   A  +R  L   +   AL+T   +       +++    +   +A
Sbjct: 506  GESCGSGDYQSYMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAA 565

Query: 418  --GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                 L+     S+  S  +++F+  +   +  +++  +A         + A + + L A
Sbjct: 566  LIRDALTLLAIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTA 625

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            L     + D     ++V               ++    +      +  +         L+
Sbjct: 626  LDIETLNNDENAWDAVV----------EEFDGYRQIWHKRGVMPMLRALMSARNIAENLL 675

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                 +      L IS+  +   + L++                    L    ++ I   
Sbjct: 676  ATAGGERRLTDILHISELLQEAGSQLESE-----------------HALVRWLAQHILEP 718

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                ++    ++                    + I+   +S+ L +  + L  +      
Sbjct: 719  DSNASSQQLRLE---------------SDKHLVQIVTIHKSKGLEYPLVWLPFITHFRVQ 763

Query: 656  KNTAKNPFLSRVMQSDL-------NLKTAEKYIGQAAHDFEMANGTRHLI------YTRS 702
                 +   S     DL        L  AE+        +                  R 
Sbjct: 764  DQAFYHDRHSYEAVLDLSHAEESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRR 823

Query: 703  LRENNIPT-IASRWLQRLLVLGGTDFFDNLKK---------------------RGQCYLD 740
              +    T +    L RLL  G       L+                      R Q    
Sbjct: 824  RSDKKGETDVHQSALGRLLQKGEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAA 883

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
               +L   T Q                +       + +                      
Sbjct: 884  SHAELSARTLQRLLYDSWRVTSYSGLQQRGHSMAQELIPRLDIDAAGVGEAAEAPAMTPH 943

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
              P     GT  H++  EL   +                    +++      +  W+ + 
Sbjct: 944  HFPRGASPGTFLHSLFEELDFTQPINP-------------QWVQEKLELSGFETRWQPVL 990

Query: 861  HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-----SIGIH------------------ 897
             +   + L            +      ++ +E     +  +                   
Sbjct: 991  TRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFYLPIAQPLTAGELDALIRRYDPLSAGC 1050

Query: 898  -----------LTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDP 935
                       L GF D +   + G   + DYK+                        D 
Sbjct: 1051 PALDFMQVRGMLKGFIDLVFRYE-GRYYLLDYKSNWLGEDSAAYTQTAMAAAMQAHRYDL 1109

Query: 936  QLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
            Q  L   AL      ++      R    + Y+ L+                A  L  +
Sbjct: 1110 QYQLYTLALHRYLRHRMANYDYERHFGGVIYLFLRGVDSERPQQGIFTTRPAAALINQ 1167


>gi|254286015|ref|ZP_04960976.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae AM-19226]
 gi|150423925|gb|EDN15865.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae AM-19226]
          Length = 1208

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 90/893 (10%), Positives = 206/893 (23%), Gaps = 117/893 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRSLYPVAMIDEFQDTDPLQYSIFSRLYLDHPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAAAFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   +   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAIASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLTESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDTESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F            +  +E  I  +    L++   L   D  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF----------LLQDGQEGGIADLQQALLKQCENL--PDVV 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                 +         +LD                      +    +     +DP      
Sbjct: 872  QCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPL 931

Query: 789  RILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINH 833
              +    +   ++                      GT  H++  E+  ++   + P    
Sbjct: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKI 991

Query: 834  LMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV 883
            +++ +     E E LP    ++                +I  +    E +    IE +  
Sbjct: 992  ILELMESEQIESEWLPVLQQLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 884  ---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
                     + P       +G H     L GF D +   + G   + D+K+        A
Sbjct: 1052 PTLNRITQRHDPLSAHAGDLGFHSVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 930  QKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                           D Q  + A  L     S++      +    +FY+ L+ 
Sbjct: 1111 YHPQRLGSAMADHRYDLQYQIYALVLHRFLRSRLAHYNYEQHFGGVFYLFLRG 1163


>gi|56461631|ref|YP_156912.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina
            loihiensis L2TR]
 gi|56180641|gb|AAV83363.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina
            loihiensis L2TR]
          Length = 1241

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 90/966 (9%), Positives = 235/966 (24%), Gaps = 184/966 (19%)

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
            L ++ + I+  + + ++    K +++  +W+ +  F ++ ++       E+     +   
Sbjct: 327  LGELQERIKRSKVQQQE-ELAKVKQHAAFWV-SNRFAELQNQR-----AEMGHDDMLTRL 379

Query: 212  IALMR----AEAEHLMKGTKGPIIIAGSTGSIPATARLMST---VANHPNGAIVLPGLDC 264
               ++          ++      ++     + P    + +    +A+   G  +    D 
Sbjct: 380  RDALKGPSGEALAAAIRKQYPVAMVDEFQDTDPVQYEIFNRIYNLADPHPGTGIFLIGDP 439

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                  +      +      +T    +      +    +      +              
Sbjct: 440  KQAIYSFRNADIYTYLKARRDTEGRHYNLARNFRSSQAMVDGVNALFERAEELPRGAFLF 499

Query: 325  MVISKSFLPPDTSDMRN---------------TDILENKIPNIQKCFSDVALIEADNERE 369
               +++ LP +                     T        + ++  +      A     
Sbjct: 500  KTEAENQLPFNPVGANGLKRTFKHCLLSSNLKTAPALLWSVSGEEKRNKDTFFRAA-ANH 558

Query: 370  EAISIAIALRMSLDENKK------------KSALITADRNLARRVKLEL-TRFGINIDIS 416
             A  IA  L                       A++  + N A  +K  L  R   ++ +S
Sbjct: 559  HANLIASLLNDPQAGYYDGDDKLEQRVKTSDIAVLVNNFNEANAIKKALSDRGLKSVYLS 618

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
                +     +  L +L++A  +  D   I + +   +      E     +         
Sbjct: 619  DRESVFAQRVAKDLLALVSACAEPRDPSLIRSALATQILGLPLSELEHIHSHEREW---- 674

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                                  Q+    + +      +    +   L+         L  
Sbjct: 675  ---------------------EQRVEQFLSYHDQWQRQGVLAMLHSLLHDHQVPAKLLED 713

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                +      L I++  +     L  +                   L + F++ +    
Sbjct: 714  RIHGERQLSDVLHIAELLQQQSLVLDGI-----------------PALVNHFAEQVNERH 756

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
               +N+             E           + I+   +S+ L +  + +  +       
Sbjct: 757  GFGSNSRT--------QSDEQQLRLESDDELIKIITIHKSKGLQYPLVFMPFVAYTQAEA 808

Query: 657  NTAKNPFLSRVMQSDLN-----------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
               K P +      +L              + E         +      ++  +      
Sbjct: 809  YRIKPPAVYHDENGELQVLWSKDDDNKQRLSNEILAEDLRKMYVAVTRAQYATFIALEAV 868

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD-----------WTRKLDYTTKQPHY 754
                     +L         + +  + +R Q                 R L+     P  
Sbjct: 869  KEHRNNPLFYLLNGGESLTDELYTEVNERWQQAPHTQLTRLEDDEPLVRALEQEQTTPKL 928

Query: 755  -KRPKPFPPLEAQPRTYSFSEI------------------KQLINDPYAVYARRILKLDF 795
              R  P      +    S+S +                    L+++     A      + 
Sbjct: 929  TPRSMPADRKLERWWVASYSALKYEGAVTKSVQAPQSPDEMNLLDERDDDEAEVASAAEP 988

Query: 796  -IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL-------------------M 835
                    P     GT  HN++ E       +   +                       +
Sbjct: 989  SPDSIHHLPKGAGPGTFLHNLLEESANIGFAQIAGDAAERAELVQGFCVSPYWQEHQNSL 1048

Query: 836  KQIIDSHFEKENL-PPHIDIIWRHLFHKISH----SFLEHE--EKIQSSIEKIFV----N 884
            +  +D++   E       + +      +        F   E   +   ++ +  +     
Sbjct: 1049 EHWLDAYLHNEFPINDSGESVSLSALEQYKAEPEFWFGASEVNAQRLDALVREHILPGHE 1108

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLI 933
             PA +    +   L GF D +    +G   + DYK+               +++      
Sbjct: 1109 RPA-LEPNVLNGMLKGFIDLVFEH-NGKYYVADYKSNWLGEDDHAYTEQAMREKILHSRY 1166

Query: 934  DPQLSLEAAALKAGSFSQID-----CRKVANLFYIRLKQ-KFKIDCITNDKKKYSADELS 987
            D Q  +   AL     +++         V    Y+ L+  + +      D+      E  
Sbjct: 1167 DLQYVIYTLALHRLLKARLGSDYDYDTHVGGAVYLFLRGHRAETGGAFCDRPPRKLIEQL 1226

Query: 988  EKSLKN 993
            +     
Sbjct: 1227 DTLFAG 1232


>gi|146312904|ref|YP_001177978.1| exonuclease V subunit beta [Enterobacter sp. 638]
 gi|145319780|gb|ABP61927.1| exodeoxyribonuclease V, beta subunit [Enterobacter sp. 638]
          Length = 1181

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 98/884 (11%), Positives = 206/884 (23%), Gaps = 155/884 (17%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGS 238
             A   ++ A      R  EL     +    A + +E        ++      +I     +
Sbjct: 330  RAMAEIREAVAREKNRRGELGFDDMLSRLDAALSSENGEALAAAIRARFPVAMIDEFQDT 389

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
             P   R+   +        +L   D       +            + +    H       
Sbjct: 390  DPQQYRIFRRIWRKQPDTALLLIGDPKQAIYAFRGAD--IFTYMKARSEVEAHYTLDTN- 446

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
                  +          +      + +  S     P    +R     + +        + 
Sbjct: 447  WRSAPGMVASVNTLFERMDAAFMFKEIPFSPVKSAPQNHALRFEYQGKTQPAMNFWLMNG 506

Query: 359  VALIEADNEREEAISIAIALRMSLDENKK-----------------KSALITADRNLARR 401
                 +D +   A   A  +R  L    +                    ++   R  A  
Sbjct: 507  EGCGVSDYQNAMAHQCAAQIRDWLSAGVRGEALLWKGEKAKSVSASDITVLVRSRQEASL 566

Query: 402  VKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            ++  LT   I  + +S    +  TL +  +  LL A+        + + +   +      
Sbjct: 567  IRDALTSLDIPSVYLSNRDSVFETLEAQEMLWLLQAVLTPERESTLRSALASSMLGLNAR 626

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
            +        A                                  V + +  L      + 
Sbjct: 627  DIDALNNDEAEW-------------------------DAVVEEFVHYRERWLKRGVMAML 661

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
              L+         L T    +      L IS+  +   + L++                 
Sbjct: 662  RELMSQRHVAENMLATSGG-ERRLTDILHISELLQEAGSQLESE---------------- 704

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
               L    S+ I   +   A+    ++                    + I+   +S+ L 
Sbjct: 705  -HALVRWLSQHIADPNSNAASQQMRLE---------------SDKHLVKIVTIHKSKGLE 748

Query: 641  FDTLILGGLNEGVWPKNT---AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            +  + L  +             ++ F + +  S  +         + A D  +       
Sbjct: 749  YPLVCLPFIANYRAQDQAFYHDRDSFEAILDLSRADASIELAEAERLAEDLRLLYVALTR 808

Query: 698  IYTRSL-------RENNIPTIASRW----LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                         R     T  S +    L RL+  G       LK+  +   D    L 
Sbjct: 809  SVWHCSLGVAPLFRRRGEKTGESDFHQSALGRLIQQGEPKDAAGLKQCLEALCDENIALQ 868

Query: 747  YTTKQPHYKRPKP-FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
             +      +   P     +   R  +   +       Y+   +           K D D 
Sbjct: 869  ISGPIDSTRWKMPEISAPDLSARQITRGLVDDWRVTSYSGLQQHGQNFAQELMPKLDVDA 928

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIID-------SHFEKENLPPHIDIIWRH 858
            +  G +         +     +     H + + +D           +       D  W+ 
Sbjct: 929  SGVGEVIEQPELTPHQFPRGASPGTFLHSLFEELDFTQPVSPEWVSEMLQKGGYDAHWQP 988

Query: 859  LFHKISHSFLEHEEK------IQSSIEKIFVNIPAKMAIES------------------- 893
            +  +   S L+             + ++  V +   + I                     
Sbjct: 989  VLTEWVTSILQAPLTESGISLSHLAAKEKQVEMEFYIPIAGPLTASALDGLIREYDPLSK 1048

Query: 894  ----IGIH-----LTGFADRIDLLKSGFVDITDYK-----------TGDNPKKETAQKLI 933
                +        L GF D +     G   + DYK           T +           
Sbjct: 1049 ACPALNFRQVSGMLKGFIDLVFRH-DGRYYLLDYKSNWLGDNSEAYTQEAMAAAMQSHRY 1107

Query: 934  DPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDC 973
            D Q  L   AL      +I      +    + Y+ L+     D 
Sbjct: 1108 DLQYQLYTLALHRYLRHRIADYSYEQHFGGVIYLFLRGVDANDP 1151


>gi|261337676|ref|ZP_05965560.1| UvrD/REP helicase family protein [Bifidobacterium gallicum DSM 20093]
 gi|270277115|gb|EFA22969.1| UvrD/REP helicase family protein [Bifidobacterium gallicum DSM 20093]
          Length = 1406

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/543 (10%), Positives = 123/543 (22%), Gaps = 37/543 (6%)

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
              +D  + +    A +  +  +     +      +      D     +T L  Y    ++
Sbjct: 858  GAVDPLAALRRLDALETLDDELKGSLRQSRSAMAQAQGDADDANNWYLTQLEEYGRRHHA 917

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                L     T+     L            +       +   S+ +   E    +  +  
Sbjct: 918  DERRLMYVAITRAKKAVLLTASTLPTALTRDETLLSGDERGKSVSNFFAEVEDVLTYHHA 977

Query: 604  EWIDIITRL--IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
               D  +    +             TL     L   L     +              A N
Sbjct: 978  NQQDWASTPTNLHETATAEDAAGGQTLRTPQGLGFDLPQGFFVGDDAQTWENVVVGDAWN 1037

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
              L+    +       +     A      A   R  + T    +       +        
Sbjct: 1038 APLTDDDTAGTLPFPTQLSPALAQRLAHSAQLVREAMATLHDADTQGGDGVAAAGMAQPQ 1097

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTT--KQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                     L+ + Q  L                 K          + +  + + ++   
Sbjct: 1098 ESKEATQPTLQAQAQKILHDVDLSAAAVLRGAQLNKEILRKAQAVLRTKRLTVTTLQHYA 1157

Query: 780  -NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM--- 835
             +D  A        L     +         GT  HN     +K    +       ++   
Sbjct: 1158 GHDNEAERLEFARSLVRPIPYVSSSSAAQAGTRLHNWAERFLKAGSGETLESQAAMINDM 1217

Query: 836  -----------KQIIDSHFEKENLPPHIDIIWRHLF---HKISHS-FLEHEEKIQSSIEK 880
                       +Q+     E            R +     +I  S +   + +       
Sbjct: 1218 HEAMRNLDMREQQLEADSLEDHKDTAKALQAERDMLTWQQRIVESPWAARQLEAAEQSVV 1277

Query: 881  IFVNIP-AKMAIESIGIHLT---GFADRIDL------LKSGFVDITDYKTGDNPKKETAQ 930
            + V     +   +     L    G  D I               I D+KTG  P K    
Sbjct: 1278 MAVPKSAGESETDGAANELAIMPGKIDAIFRGRLDGSDTEHSFTIVDWKTGRRPVKPEDV 1337

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
            +    QL              I+    A L+Y+    +   +  +   +  S  ++  + 
Sbjct: 1338 QEKLRQLDFYRLLWSRAQDIPIERID-ATLYYV---SEADENRRSLTAEPKSEQQILNEL 1393

Query: 991  LKN 993
             + 
Sbjct: 1394 REG 1396



 Score = 57.2 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 69/834 (8%), Positives = 192/834 (23%), Gaps = 140/834 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEF---------IEITGKKSTIL-PIIKSLGDVVEEKFTADLL 94
             +     T++A  EL              + T   +  + P + +     +       L
Sbjct: 51  QHILGLTFTRKAASELLQRVTSAYTKSLHADDTSNAARFMKPEVLTYDAFFQGIVRRYGL 110

Query: 95  LSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL---------------- 136
           L        P+S       ++ ++     ++ +  KD    S +                
Sbjct: 111 LVGFDQNVQPLSEAGAHQLISDVVDANMQQVLEASKDYGSFSTMVNDVYALSNNIASSMI 170

Query: 137 -----SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL------------------- 172
                +   +        +   D++D +  E +  E +                      
Sbjct: 171 GGDCHTFDQAVQRVHEWDQAFLDLLDELIGERELPEKIPNFKSVPKRTKKQTDQQYAEKV 230

Query: 173 ----KNEKYGMWWLLAAD--FLKIASKYWTERLVELNASSPVGYQIALMR---------- 216
                  +             L+  ++     L  +   +    Q  +            
Sbjct: 231 AQINAENELIGEQKALQTAMDLREVTRKRETLLSLVQLYAQAKQQRHMAEFGDFTIAAYQ 290

Query: 217 -----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV--------------ANHPNGAI 257
                       +     +++     +    A L++ +                    + 
Sbjct: 291 LVTQFPSIGEQYRRRYTHVLLDEYQDTSTTQASLLAALFHPDSTPTHADEAGMQPAGTSA 350

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
           V    D       W   +  +  +   +        + L      L I          + 
Sbjct: 351 VGAVGDPFQSIYAWRGASPGAFRMFQRD--------FGLPPTYAPLPITMTRRNAKLVLE 402

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE-ADNEREEAISIAI 376
                  + +S    P   S     ++   ++  +      V  ++      EE   I  
Sbjct: 403 AANA---LTMSLRKAPKRRSSSPMREVDVPELTTMATADRGVIGMQHYVTRGEEIDGIVR 459

Query: 377 ALRMSLDENKK------------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
            +  +  +                 AL+   +      +  L   G+++ +     L   
Sbjct: 460 FVHEAQRKYGSVDPEMGVDAQAPHVALLFRSKTHMDEYRAALESAGLSVQVVGKSALLDR 519

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS-- 482
                + +LL+A     D   +  L+          +            +  R       
Sbjct: 520 AEVRDVLALLHAASDHADAAHMLRLLATARYHVNAHDLAAFAKLAEQLNMQQRYRLLCET 579

Query: 483 ------------YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                          +   +L   + A ++    +P+    +     +    L+      
Sbjct: 580 GVVKPSGKGDDLDAAIAATALRDQKAAVREYRNKLPNSVFLVDTLLHDDLAQLLTTTDIS 639

Query: 531 ITPLVTYKTNKNSTCG-----NLSISDWTKLTVTCLQNVCL--DEHRKLPNLWFEEEGKT 583
                +  +   +           + +  +     L                      ++
Sbjct: 640 EQGRASLLSAAQALQAVKASLYGPLDEAIRAASEALNLDIDMLVAAGLQGRDEHAASVQS 699

Query: 584 LSSLFSKII-----ETGSCIKANAIEWIDIITRL-IDGETVKPKIEKSSTLFILGTLESR 637
                  ++     E  +    +   ++  +  L    E     ++    + ++   +S+
Sbjct: 700 PLRSLHNLVSTYVQEISNDQSVSLRGFLAWVESLKDAQEETAQGVDAVCDVVLMTIHQSK 759

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE--MANGTR 695
            L +D +++  L    +P N  ++  +                  + A  ++      T 
Sbjct: 760 GLEWDAVVIPSLEANTFPSNVGEHLKIETPDTLFGQTHAPGSGAVEDAPMWQPPEYQETA 819

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
               T          + +  L +          D+ +      L   R+LD   
Sbjct: 820 DTWLTMPQAVPVPVRVDAGILPQFPHDAADGSSDDEETGAVDPLAALRRLDALE 873


>gi|332527049|ref|ZP_08403133.1| exodeoxyribonuclease V, gamma subunit [Rubrivivax benzoatilyticus
           JA2]
 gi|332111483|gb|EGJ11466.1| exodeoxyribonuclease V, gamma subunit [Rubrivivax benzoatilyticus
           JA2]
          Length = 1111

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 76/733 (10%), Positives = 179/733 (24%), Gaps = 33/733 (4%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I VP+    + L  EF ++ G  + +         + +  +     +   ++   S   
Sbjct: 33  EIVVPSAAVRRRLTLEFAQVEGVCAHLR-----FDYLAQWLWRQIAGVVPGIDAERSPFA 87

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
             +   R+     ++             +           LA+ +A  I+   T   +W 
Sbjct: 88  PEVLAWRVWRALGDREGVAAHPRLAGYLVQADEVMR--WELAERIAATIEQYVTYRPEWL 145

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG-----YQIALMRAEAEHL 222
                            AD     ++ W   + E   S           ++         
Sbjct: 146 AEWLAGRPVVFPGGAAPAD-AGWQAELWRRIVAETGVSGRHPIEGFIDTLSRPGGAERAR 204

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             G    + +       P  ARL++ +    +  + L          + +          
Sbjct: 205 EAGLPERVHVVALPTMPPLHARLLAALGRAIDVEVYLLNPCREYWFELVDPRRLAWLQAA 264

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
             +  +    +                +   G+   + +        + L    + + ++
Sbjct: 265 GRDAGHEVGNRLLAGWGKQTQAQIDGLLDAAGDAVVDEHLFIQPPEHTLLGRLQTAILDS 324

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398
             L+            V    A +   E  ++   L      +         ++T D   
Sbjct: 325 VELDAGSAADLTGERSVEFHVAHSRTRELEALHDRLLALFAADATLTPGDVLVVTPDLEA 384

Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              +   +         I   ++          +  L +LL+          +  L++ P
Sbjct: 385 TAPLVDAVFGTVPAGRRIPYAVTGRARSGQDPAARALLALLSLTSSRVAASELFALLQQP 444

Query: 454 ----LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
                                   +    +       DL +     +A   +   + H  
Sbjct: 445 AVARRFGLDEAALERLHGWLLASGLHWGLDAAHRAGFDLPAETRHTLADALDRLFLGHAL 504

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
              +E      +   D        L  +     +     + S   +      + +     
Sbjct: 505 PAGAESPLPGLLPAGDAEGSAAATLGAFWRYAEALRWLQAESVRPRPAAAWARLLHAALD 564

Query: 570 RKLPNLWFEE-EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK---IEKS 625
           R +     E+   + L +  +++ +  +     A      + R      +         S
Sbjct: 565 RFVAPAGDEQPALRELRATIARLADDVASGAGAATVLPLAVLRRALEARLDDPARGGVPS 624

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
             +        R L +  +   GL++G +P       F    +      +          
Sbjct: 625 GAVTFSAMSSLRGLPYRVVCAIGLDDGAFPTTARPPEFDLIALAPRRGDRQRRHDERNVF 684

Query: 686 HDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            D  +     HL  +   R   +N P   S  +  LL L      DN  +         R
Sbjct: 685 LDL-LLAAREHLHLSWRGRSVRDNAPLPPSVLVAELLELLAAATADNPDEPASVAAARKR 743

Query: 744 KLDYTTKQPHYKR 756
            +     Q     
Sbjct: 744 LVVEHPLQSFAPE 756


>gi|307131099|ref|YP_003883115.1| exonuclease V (RecBCD complex), subunit beta [Dickeya dadantii 3937]
 gi|306528628|gb|ADM98558.1| exonuclease V (RecBCD complex), beta subunit [Dickeya dadantii 3937]
          Length = 1224

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 100/1019 (9%), Positives = 237/1019 (23%), Gaps = 130/1019 (12%)

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP------DIIKDLYPESPLSLP 139
              ++  +L    N              AR    W +KL       + + D+        P
Sbjct: 242  WPQWCGELRDLLNAAVAQKKADGRKLQARYFEPWLDKLQHWATSDEAMLDIGTGWTRLTP 301

Query: 140  ISPANAIWLAKNLADI--IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
                    + +       +  +ET  ++  +L      +                +    
Sbjct: 302  QGLRECWKVPEEAPQHPALTAMETLAQQLSELPE-PRSQLLRHACRWVSQRFRHEQESRA 360

Query: 198  RLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTVANHPNGA 256
            ++   +  + +   +     E        + P+ +I     + P   R+  T+    +  
Sbjct: 361  QMGFQDLLTRLDAALRGDNGERLAQRIRRQFPVAMIDEFQDTDPLQYRIFDTLYRVADND 420

Query: 257  I---VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL---------D 304
                ++   D       +      +      +T    +   +  +    +          
Sbjct: 421  PQQGLILIGDPKQAIYAFRGADIYTYLRARRDTDGRHYTLGTNFRSTQAMVGAVNQVFMQ 480

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
             +         +  +  G + V           +    D  +          +D  L  A
Sbjct: 481  AENRADGAGAFLFRQPDGDNPVPFLPVKANGRDEAWVLDGADAAALTCWTLATDEPLSSA 540

Query: 365  DNEREEAISIAIALRMSLDENKK------------------KSALITADRNLARRVKLEL 406
            +  +  A   A  +   L    +                    A++      A  V+ +L
Sbjct: 541  EYRQRMAAGCAREMVRLLQLGGQGRAGFAVPGQPLRPVKPGDMAVLVNTGREAMAVRAQL 600

Query: 407  -TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP---LAKFGFPEK 462
              R   ++ +S    +  +  +  L   L A     +   +   +  P   L+       
Sbjct: 601  SARGVRSVYLSDRESVFDSPQAGELHCWLAACADPENDRLLRAALATPALGLSWQALDRL 660

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                 +    ++     +  +    +  ++   +        +    +  +  D      
Sbjct: 661  NHDEQEWERRVMQFDHYQRCWQQQGVLPMLRRLMWDFDVPRRLLAADNTRALTDMLHLSE 720

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            L+                  ++          +      Q            L  + +  
Sbjct: 721  LLQ----------------QASVHLDGEHALIRYLAEQCQADNPGGDTLKLRLESDADLV 764

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             + ++          +          +++            K     I      +  + +
Sbjct: 765  KVVTVHKSKGLEYPLVFLPFACAFRTVSQRDVPLKFHDDDGKPRLELIASDEAVQRADHE 824

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
             L        V         +L      +L   +    +G A    E A  T+ L     
Sbjct: 825  RLGEDLRKFYVALTRARYAMWLGMAPLKELEKSSPGYLLG-AGEPLEPAQLTQQLSTWCG 883

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
                  P   +        L                  W        +       + F  
Sbjct: 884  ADSQIAPLPETDDAVYRAELHTPALGQEPPLPDMRSHRWRITSYSGLQLAPEGHYREFRE 943

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
              A       S  ++  ++P    A R+  L         P     G+  H ++    K+
Sbjct: 944  PAAGDEPEVQSAKQETFSEP-QASAERLPPLPSGLDMYSFPRGAAPGSFLHGLLEWAGKE 1002

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-------- 874
                       +  Q+      +          W  +      + L     +        
Sbjct: 1003 GFAALAANRPRVEDQVARRCNRQG------WTQWIPMLTDWLMTLLSQPLALPTQPGSAV 1056

Query: 875  -QSSIEKIFVNIPAKMAIE-------SIGIH--------------------LTGFADRID 906
              + + +  V +    A+           +                     L GF D + 
Sbjct: 1057 SLARLTQYQVEMEFWFALNQVDTQILDQQVRAATLAGEPRAALMREQLNGMLKGFIDLVF 1116

Query: 907  LLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAAALKAGSFSQID-- 953
              + G   + DYK+                    +   D QL+L   AL     S++   
Sbjct: 1117 EHQ-GRYYVLDYKSNWLGADAADYDLPRMASAMLEHRYDLQLALYLFALHRLLKSRLPDY 1175

Query: 954  --CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010
               R V    Y+ L+           ++            ++LIE +  L +GE    +
Sbjct: 1176 DYDRHVGGALYLFLRGSQAPGGGVCAERPD----------RSLIEALDRLFSGETEATA 1224


>gi|256826533|ref|YP_003150492.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Cryptobacterium curtum DSM 15641]
 gi|256582676|gb|ACU93810.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Cryptobacterium curtum DSM 15641]
          Length = 1262

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 73/766 (9%), Positives = 182/766 (23%), Gaps = 103/766 (13%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPI-------IKSLGDVVEEKFTADLLLSYN 98
              +   T +A  E++         +  +          I ++  +         L +  
Sbjct: 60  EALVITFTNKAAGEIKDRIRAALRAEGMMTEALKVDGAWISTIHGMCSRILREHALEADL 119

Query: 99  LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
                  +    ++AR        + + +K+    +  +L         L  ++  ++D 
Sbjct: 120 DPAFELAMGADCQMAR--TEACACVLEEVKETDDNAYQALFAGFRTTQALEDSIGRLLDE 177

Query: 159 I---------ETEEKKWEDLHALKN--------------EKYGMWWLLAADFLKIAS--- 192
           +                     +                +K        AD L       
Sbjct: 178 VSYQTDGFASLDRGPDPAQASDVVRKVLAACEATIACGTDKNRATAQALADALNDLIAKN 237

Query: 193 KYWTERLVE-----------LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
               E L++              +  +   ++  +A  +          +I  +  +   
Sbjct: 238 HVTPETLLDALNAVNSNGLRGGKAVELKDAVSEAKALLQLSAASEMLDELIDLAQRTEEK 297

Query: 242 TARLMSTVANHPNGAIVLPGLDC-HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
              ++   A      ++   L       A+  T TE+   I       ++  Q  L + +
Sbjct: 298 YRAILHARAQLDTSDLIRTTLRLFKQNPALARTYTERFKLIMVDEFQDTSQLQIDLIEFI 357

Query: 301 DF---------------------------LDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
                                        L  KR+ +        E    +       L 
Sbjct: 358 TGADKHNLCTVGDSQQSIYRFQGADVEVYLRHKRDMLSDAVGARIEQLDDNFRSHADVLA 417

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE---------------EAISIAIA- 377
                         +  +++        + +D+  E               EA  IA   
Sbjct: 418 LVRRICGQKGYFSEEFLDLKAAGPGKTWLSSDSRIEMALTRCTSAEAGARCEAAHIARRF 477

Query: 378 --LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
             LR +     +   ++      +      L   G+   ++ G          +   L+N
Sbjct: 478 AALRQAG-HKARDMVVLMGSTTASDIYAQALRDEGLPCIVAGGSKFFEAPWVDLCQRLVN 536

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            +    D  ++  ++   L      +       +    V     + +  +  L++     
Sbjct: 537 VLANPYDSESLLMVLTSELLPVSSDDLLFLATYH--NEVTGDAVRQNPAVGLLRADRAPF 594

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
           IA++  +      +        +    +   +   +         K    G    +D  K
Sbjct: 595 IASELLDHATDVLKRAWQSLGSQRPRDVF--MQVILESGWLACLEKQGAEGQAIAADILK 652

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLS-----SLFSKIIETGSCIKANAIEWIDIIT 610
                 +    +           E  +TLS     +L  +  +    +  +A + ++   
Sbjct: 653 FARLIEEESYANGFDMARVARALEHRRTLSSEKPGALTIEGSDAVRIMTVHASKGLEFPI 712

Query: 611 RLIDGETVKPKIEKSST-LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
             I          +    L   G +   L   D        E        +       +Q
Sbjct: 713 VAIANCYTTRTTGERPYMLTDQGKIALTLPPSDLKAPKLPEELADATTPFEATNQLEFLQ 772

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
               + T  KY  +    +  A      +      +         +
Sbjct: 773 LIRKIDTDRKYAERKRLFYVAATRASDAVIVCLKHKLKKDGSPQEY 818



 Score = 54.5 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 63/220 (28%), Gaps = 38/220 (17%)

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
            + D T  G+  H     L  + +  ++ E+   +K+                +      H
Sbjct: 1054 EDDATAFGSAVHQTCEWLALQPVLPSSDELAAAIKR----------FSLLWHVSDVPRVH 1103

Query: 862  KISHSFLEHEEKIQSSIEKIFV-NIPAKMAIESIGIHLTGFADRI------------DLL 908
                ++L      Q+         +P  + + +    L G  D +               
Sbjct: 1104 TAVSNWLNSSLCKQAFSFPQHSPEVPFTILVGNE--VLEGEIDLLCTGTHPRKTKGHAAS 1161

Query: 909  KSGFVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966
                  I DYKTG +P    E        Q    A A     FS ++        +IRL+
Sbjct: 1162 ADDCAFIVDYKTGGSPLETPEQLSAKHLLQAQCYAYAALQNGFSHVEAH------FIRLE 1215

Query: 967  QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
            Q             +    LSE     L  ++   +   Q
Sbjct: 1216 QLSDSGEPQTISYSFDRSNLSE-----LERLILAARKAAQ 1250


>gi|297626185|ref|YP_003687948.1| exodeoxyribonuclease V beta chain RecB [Propionibacterium
            freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921950|emb|CBL56510.1| Exodeoxyribonuclease V beta chain RecB [Propionibacterium
            freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 1120

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 81/896 (9%), Positives = 194/896 (21%), Gaps = 103/896 (11%)

Query: 153  ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
            A +I  +         L A          +   +F     + +  R    +         
Sbjct: 185  AQLIGEMSLSHPDLPLLDA--PAGASPDAVSRVEFATNLRREFEARKRSSSVYGYHDMVQ 242

Query: 213  ALMRAE--------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
             ++ A         A  ++      +++     + PA  +++    +     +V+   D 
Sbjct: 243  RVLMALTDPVTGELAARVLAARYDLVMVDEFQDTSPAQWQILEHAFHGRTRLVVI--GDP 300

Query: 265  HIPTAIWNTITEKSTNITSSNTTY----------STHPQYSLAKLLDFLDIKREDVKRLG 314
                  +      +    +                      +  L    ++  E  +   
Sbjct: 301  RQAIYGFRGADLYAYLAATRRADDYFTLNRNYRSDAGVVQGITALFGQANLGTEAARVAL 360

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
               +  +    +   S                   P  +K      + E D     A   
Sbjct: 361  GDMHAQHVEPRLAGASPKQAAVQIRAVEPQSMLTAPAGRKAIMADLVAEFDRLLNRAEV- 419

Query: 375  AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                           A++   R   + ++  L   GI    + G  +  +  +     LL
Sbjct: 420  -NDGEHWRHLRPSDIAVLVRRRATGQEIQRALIAAGIPAVFTGGEGVFASSAAQAWLVLL 478

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE-LVALRGNKNSYDIMDLKSLVL 493
            +A+        +  L   PL  +   E   +      E +  +R  + +     + ++  
Sbjct: 479  SALADP-RPSVLLHLASTPLIGWSPRELADADEDQRTELVTGVRALQATMHDHGVAAVYE 537

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
            +  A  +    +        E        L + +               +          
Sbjct: 538  ELSARYRLPPRLL--AQPDGERMLTDLRHLAERLNSAERRHHLDLPALTAWLAQRIDQAR 595

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            T      ++ +  +          + +G     +    +            W   +  + 
Sbjct: 596  TSQDDDSVRRLETERRAVSIMTIHKAKGLQFPVVALPDLADRYSGSRYDRGWTTSMLHVD 655

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               ++    + SS    +   E +  +   + +              N   +        
Sbjct: 656  GQLSIDLYTDMSSDREAIKQAEEQAEDLRLVYVAATRAQSRLIAWWANTKFNTSTSPLHR 715

Query: 674  LKTAEKYIGQA-AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
            L  A+K      A +             R + +       S                  K
Sbjct: 716  LLNADKDSALPPALNIAGGRHPDQWPLDRQVVDVVSVPRPSGIASVPRSADLIAGLAARK 775

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                   DWTR          +    P   +  +        I   + DP  V       
Sbjct: 776  FHDHIDRDWTRTSYSGLTAGLHGESLPPGSVSPRDDEPDLDGI---LADPGEVDGPVSPS 832

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                    + P  T  G+L H+++  +     +    ++     +++      +     +
Sbjct: 833  ALQPNGLAELPGGTQFGSLVHSVLE-ITDPASSSLDSDLLEASARMLRRWPVAQVPAQGL 891

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--------------- 897
                  +                         +  +M +     H               
Sbjct: 892  ATGLASVLRAPLGDLTNGRSLTDLGAVNRLAELEFEMPLGRASRHRAVSDLAGLWADRAL 951

Query: 898  ---------------------------LTGFADRIDLLK-----------SGFVDITDYK 919
                                       LTG  D +  +            +    + DYK
Sbjct: 952  VPEDDPLVDYGAALAGSAAADRTLSGFLTGSIDAVLRVAPAGHAGAADSATAQFCLIDYK 1011

Query: 920  TGDNP-----------------KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958
            T   P                            Q  + + AL      ++     A
Sbjct: 1012 TNRIPVRPGDHLGPHSYTRRAMTDAMIGAHYPLQALIYSVALHRYLGQRLPGYSPA 1067



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 84/951 (8%), Positives = 203/951 (21%), Gaps = 98/951 (10%)

Query: 8   VFTIAPSSPFFREMIPALLNGTLVENFRYDPL-NPLLLASVTIYVPTKRAIQELRSEFIE 66
           V  + P +             T+            + +  V +    + A  ELRS   E
Sbjct: 13  VAALPPHTTVLEAGAGTGKTYTIAALTAQALARGQVTIERVMLVTFARAASYELRSRVHE 72

Query: 67  ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
                +T                             +         A L     + L   
Sbjct: 73  RLRNTAT---------------------AIDATLAGIPPTDPDAVDADLCAGEADVLTAR 111

Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADII------DIIETEEKKWEDLHALKNEKY--- 177
           +  L          + A        L D +      D   +     + L A   +     
Sbjct: 112 LARLRAALADFDRATIATTHEFCARLLDQLGILVDHDRFSSFLDDPDQLRAQVIDDGYLA 171

Query: 178 ------------------------------------GMWWLLAADFLKIASKYWTERLVE 201
                                                   +   +F     + +  R   
Sbjct: 172 WMSSGRPPLPLPGAQLIGEMSLSHPDLPLLDAPAGASPDAVSRVEFATNLRREFEARKRS 231

Query: 202 LNASSPVGYQIALMRA--------EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
            +          ++ A         A  ++      +++     + PA  +++    +  
Sbjct: 232 SSVYGYHDMVQRVLMALTDPVTGELAARVLAARYDLVMVDEFQDTSPAQWQILEHAFHGR 291

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY----------STHPQYSLAKLLDFL 303
              +V+   D       +      +    +                      +  L    
Sbjct: 292 TRLVVI--GDPRQAIYGFRGADLYAYLAATRRADDYFTLNRNYRSDAGVVQGITALFGQA 349

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
           ++  E  +      +  +    +   S                   P  +K      + E
Sbjct: 350 NLGTEAARVALGDMHAQHVEPRLAGASPKQAAVQIRAVEPQSMLTAPAGRKAIMADLVAE 409

Query: 364 ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
            D     A                  A++   R   + ++  L   GI    + G  +  
Sbjct: 410 FDRLLNRAEV--NDGEHWRHLRPSDIAVLVRRRATGQEIQRALIAAGIPAVFTGGEGVFA 467

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE-LVALRGNKNS 482
           +  +     LL+A+        +  L   PL  +   E   +      E +  +R  + +
Sbjct: 468 SSAAQAWLVLLSALADP-RPSVLLHLASTPLIGWSPRELADADEDQRTELVTGVRALQAT 526

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                + ++  +  A  +    +        E        L + +               
Sbjct: 527 MHDHGVAAVYEELSARYRLPPRLL--AQPDGERMLTDLRHLAERLNSAERRHHLDLPALT 584

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
           +          T      ++ +  +          + +G     +    +          
Sbjct: 585 AWLAQRIDQARTSQDDDSVRRLETERRAVSIMTIHKAKGLQFPVVALPDLADRYSGSRYD 644

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
             W   +  +    ++    + SS    +   E +  +   + +              N 
Sbjct: 645 RGWTTSMLHVDGQLSIDLYTDMSSDREAIKQAEEQAEDLRLVYVAATRAQSRLIAWWANT 704

Query: 663 FLSRVMQSDLNLKTAEKYIGQ-AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
             +        L  A+K      A +             R + +       S        
Sbjct: 705 KFNTSTSPLHRLLNADKDSALPPALNIAGGRHPDQWPLDRQVVDVVSVPRPSGIASVPRS 764

Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                     K       DWTR          +    P   +  +        I   + D
Sbjct: 765 ADLIAGLAARKFHDHIDRDWTRTSYSGLTAGLHGESLPPGSVSPRDDEPDLDGI---LAD 821

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
           P  V               + P  T  G+L H+++  +     +    ++     +++  
Sbjct: 822 PGEVDGPVSPSALQPNGLAELPGGTQFGSLVHSVLE-ITDPASSSLDSDLLEASARMLRR 880

Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
               +     +      +                         +  +M + 
Sbjct: 881 WPVAQVPAQGLATGLASVLRAPLGDLTNGRSLTDLGAVNRLAELEFEMPLG 931


>gi|153801076|ref|ZP_01955662.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-3]
 gi|124123430|gb|EAY42173.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-3]
          Length = 1208

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 93/893 (10%), Positives = 209/893 (23%), Gaps = 117/893 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLEYPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+    +      +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVSAVNQVFSSSTHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S +   R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPDADKRHWTLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   AI  R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAAIFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   V   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLAESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVILPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDAESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F            +  +E  I  +    L++   L   D  
Sbjct: 824  LRNGNSSQESTSAHRSAMGF----------LLQDGQEGGIADLQQALLKQCENL--PDVA 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                 +         +LD                      +    +     +DP      
Sbjct: 872  QCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPL 931

Query: 789  RILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINH 833
              +    +   ++                      GT  H++  E+  ++   + P    
Sbjct: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKI 991

Query: 834  LMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV 883
            ++  +     E E LP    ++                +I  +    E +    IE +  
Sbjct: 992  ILDLMESEQIESEWLPVLQHLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 884  ---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
                     + P       +G H     L GF D +   + G   + D+K+        A
Sbjct: 1052 PTLNRITQRHDPLSAHAGDLGFHSVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 930  QKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                           D Q  + A AL     S++      +    +FY+ L+ 
Sbjct: 1111 YHPQRLGSAMADHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRG 1163


>gi|291542614|emb|CBL15724.1| recombination helicase AddA, Firmicutes type [Ruminococcus bromii
            L2-63]
          Length = 1186

 Score = 59.9 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 57/169 (33%), Gaps = 12/169 (7%)

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK---QIIDSH 842
            Y  +IL    +   +++     RGT  H  +     ++   +       +    ++    
Sbjct: 1002 YFEKILS-KPLFIAEQNSAPVARGTAHHKFLQYCNFEQARASLDTEIDRLLNDGKLTQEQ 1060

Query: 843  FEKENLPPHIDIIWRHLFHK--ISHSFLEHEEKIQSSIEKIFV--NIPAKMAIESIGIHL 898
             +       ++           I+   +  E++  + ++   V       +  ++  + +
Sbjct: 1061 VD-MIDRKTLNEFLSTKLIDRIIASQLVMREKRFTARLKPSEVFDEYK-DVKTDA-TVII 1117

Query: 899  TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
             G  D +  ++ G + I DYKT           L   QL L  +A++  
Sbjct: 1118 QGAVD-LAFVEDGKLVIVDYKTDRVKDITKLAGLYKKQLDLYKSAMEQS 1165


>gi|219883001|ref|YP_002478165.1| hypothetical protein Achl_4397 [Arthrobacter chlorophenolicus A6]
 gi|219862007|gb|ACL42348.1| hypothetical protein Achl_4397 [Arthrobacter chlorophenolicus A6]
          Length = 615

 Score = 59.9 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 74/196 (37%), Gaps = 22/196 (11%)

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
           + +  S S  K + +        R+L+ +    F   P     GT  H+++ ++  + + 
Sbjct: 31  RRKALSPSTSKSMQSCAARWVGERLLRSEDEDPFAPAP----LGTSAHSVMEDMYDEDVY 86

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDII---WRHLFHKISHSFLEHEEKIQSSIEKIF 882
           +       L + +     + + + P I+      R +       ++E  +     I  I 
Sbjct: 87  ERHERSLALAEALT--VRDADIMWPDIESEPDSVRAMVRLNRRRWIEEVKIAYEGIFVIE 144

Query: 883 ----VNI-PAKMAIESI---GIHLTGFADRI--DLLKSGFVDIT--DYKTGDNPKKETAQ 930
               + +   +M I+ +   G+   GF DR+   + K G   +   DYKTG         
Sbjct: 145 DPKTIEVHSREMQIDGLTINGVPTNGFIDRVRYGVNKRGKEGLIPEDYKTGKVGNTRFGD 204

Query: 931 KLIDPQLSLEAAALKA 946
              D QL + AAALK 
Sbjct: 205 DHGD-QLRIYAAALKE 219


>gi|294635091|ref|ZP_06713603.1| exodeoxyribonuclease V, beta subunit [Edwardsiella tarda ATCC 23685]
 gi|291091513|gb|EFE24074.1| exodeoxyribonuclease V, beta subunit [Edwardsiella tarda ATCC 23685]
          Length = 1186

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 86/800 (10%), Positives = 190/800 (23%), Gaps = 65/800 (8%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLM----KGTKGPIIIAGSTGSIPATARLMSTVAN 251
              R  EL     +      + A+A   +    +      +I     + P   R+   +  
Sbjct: 341  KRRRAELGFDDLLSRLAQALDAQAGEALAAAIRQRYPVAMIDEFQDTDPQQYRIFHHIYG 400

Query: 252  HPNGAI--VLPGLDCHIPTAIWNTIT-----------EKSTNITSSNTTYSTHPQYSLAK 298
                A   +L   D       +               E    + ++  +     Q     
Sbjct: 401  GAAQAETALLLIGDPKQAIYAFRGADIFTYLQARAAVEACYTLGTNWRSAPGMVQAVNRL 460

Query: 299  L-LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM----RNTDILENKIPNIQ 353
              L       +++  L   +        ++                      E      Q
Sbjct: 461  FSLSPAPFLFDEIPFLPVAAAPKNAHHRLLIDDVAQAALDLWLYDVPGCSQQEYLHVMAQ 520

Query: 354  KCFSDVALIEADNEREEAISIA-IALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
            +C + +    +  +R EA  I                 ++   R+ A  ++  L+   I 
Sbjct: 521  RCATQIRDWLSAGQRGEARLIGEDESAEGRPLCAADMTILVRSRHEATVMRDALSALNIP 580

Query: 413  -IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
             + +S    + +T  +  L  LL AI        + + +   L      E          
Sbjct: 581  SVYLSNRDSVFSTPEARDLLWLLQAILAPAQSRTLRSALAVGLLGLSAAELDALNQDERR 640

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK-ELAVLLVDHILQC 530
                +    +       + ++              +  +    E +    + L + + + 
Sbjct: 641  WDAVVDEFDDYRRHWQRRGVLPMLRELIGRRRLAENLLATSGGERRLTDVLHLGELLQEA 700

Query: 531  ITPLVTYKTNKNSTCGNLSISD-WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
               L +           +       +     L++          +     E   +   F 
Sbjct: 701  AQQLESEPALVRWLAQQIDSPQPQAESQQMRLESDRHLVQVVTIHKSKGLEFPVVFLPFV 760

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                       +    +  +  L   E    + ++      L  L   +         G+
Sbjct: 761  ATFRRQRQGLYHESHSLQAVWDLCADEQALARADQERLAEDLRLLYVGVTRSIYYCALGI 820

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN--- 706
               V      +             L+  +    +  H    A     +  TR    +   
Sbjct: 821  APLVLGNRKKQGESDLHHSALGYLLQRGDACDAEGLHQALQALQDDDIRLTRLAPVDVEA 880

Query: 707  -NIPTIASRWL--------QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
               P   +R L         R      +            YL+    LD      H   P
Sbjct: 881  WQGPLATARTLCAKAFNRSLRDTWRVTSYSALQQHGSSGRYLELLPHLDIDAAGEHRAPP 940

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
             P     + PR  +       + +                  ++         L H  +T
Sbjct: 941  APSLDAHSFPRGAAPGTFLHSLLEALDFTQPIDELWLAERCQEQGLAPEWVPALAH-WLT 999

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            ++++  ++     ++ L         +     P    +      ++         +    
Sbjct: 1000 QILQAPLDAQGVSLSQLAPTHCQPELQFYL--PIARPLDPARLDEVIRRHDALSAQSPP- 1056

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK------TGDNPK-----K 926
                       +A  ++   L GF D +   + G   + DYK      TG+         
Sbjct: 1057 -----------LAFNAVDGMLKGFIDLVFCHR-GRYYLLDYKSNWLGETGEAYSDAAMAA 1104

Query: 927  ETAQKLIDPQLSLEAAALKA 946
                   D Q  L + AL  
Sbjct: 1105 AMVSHRYDLQYQLYSLALHR 1124


>gi|226304347|ref|YP_002764305.1| exodeoxyribonuclease V beta chain [Rhodococcus erythropolis PR4]
 gi|226183462|dbj|BAH31566.1| exodeoxyribonuclease V beta chain [Rhodococcus erythropolis PR4]
          Length = 1105

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 97/1081 (8%), Positives = 232/1081 (21%), Gaps = 154/1081 (14%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLN 100
             ++ V +   ++ A QELR    E       + + P      D   +   A L  + +  
Sbjct: 42   DISQVLLVTFSRAATQELRERARERFAGVSAALVDPEAARRSD---DDLVAYLATADDEE 98

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI-----WLAKNLADI 155
              V   + L  LA              + +     ++    P          L   +   
Sbjct: 99   IGVRRRRLLRALAEFDAGTITTTHSFCQRMLDGLGIAGEREPDTTFVESVDDLISEVVSD 158

Query: 156  I-----------------DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW--T 196
            +                 D +        D  A+               L  A+      
Sbjct: 159  LYLSRYSRTDSSPPFSTKDALAIARIAVGDGQAILEPDGEEETAPGQRVLFAAAARLEVE 218

Query: 197  ERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIPATARLMST 248
             R               L            A   ++     ++I     + P    ++  
Sbjct: 219  RRKRTKGIRDFNDLLTLLHGVLTDPEYGPVACRRVREKFKVVLIDEFQDTDPLQWDILRL 278

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTI------TEKSTNITSSNTTYSTHPQYSLAKLLDF 302
                     ++   D       +                     T +      L   L+ 
Sbjct: 279  A--FHGHTTLVLVGDPKQAIYAFRGAEVLSYLDAVDQADAHQELTTNWRSDPGLLAALEH 336

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            L                            +P     +  T                 + +
Sbjct: 337  LYGGAALGNEGIVAHPVEASHKKSRLSGPVPMRVRHLPRTGAGPLNRSGFPAVGRLRSRV 396

Query: 363  EADNEREEAISIAIALRMSLDENKKK-----SALITADRNLARRVKLELTRFGINIDISA 417
              D   +    +    R+++D + +       A++         ++  L   G+   ++ 
Sbjct: 397  ADDVAADVVGLLGSDARLAVDGDPRPVEPGDVAVLVRTHKQVAMIRDALDAVGVPSVLTG 456

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  +  T  ++    LL AI + +    +      P+      E  +       + V   
Sbjct: 457  GSSVFATPSATQWLWLLQAIEQPHRSDRVRLTALSPIFGRTAEELDV-----DGDNVVAE 511

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                      L + V      ++ +      +  L+    E     + H+ Q +  + T 
Sbjct: 512  LAGQLRSYSGLFARVGFAAVFERISAETNLEKRVLAAPSGERDFTDLRHVAQLLGRVATE 571

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
            +                   V  L +   D                 +++    +     
Sbjct: 572  EAFG------------LSALVRWLSDRIKDPTSGSATDRSRRLDSDAAAVQIATVHATKG 619

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            ++   +        +    +    +       IL          +        E    + 
Sbjct: 620  LEFPIVYVPFSWESVGGFNSPTQLLHDPDGRRILDVGGQEGPGHNARKTVAEAEEAGEEL 679

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY-TRSLRENNIPTIASRWL 716
                  L+R     +          ++     M   T  +    R ++  +  T A+R  
Sbjct: 680  RLLYVALTRAQCQLVLWWAPSYGTSRSPLHRLMLGRTPGIAEPARVVKVLDDGTTAARLA 739

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
                         +++  G       +              +    L+   R  S+S + 
Sbjct: 740  T---WPAAASDVISVEPVGPHPPSPVQWSGAAANVTELAAARFDRDLDTLWRRTSYSALT 796

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
               +         +   +      +  D  D GT+  + +  L               + 
Sbjct: 797  AGAHHAVTSTDSEV---EDPEKDDEPEDSVDFGTVTPSPLEALPSPMNGLPAGAAFGTLV 853

Query: 837  QIIDSHFEKENLP----------PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV--- 883
              +    +                 + +    +  +     L    +       +     
Sbjct: 854  HEVLEVVDTAASDLRAELGIRCAEAVSVRAAEVDSEALADALLLVMQTPLGFGTLATIAP 913

Query: 884  -----NIPAKMAIESIG------IHLTGF------------------------------- 901
                  +  ++ +          + L G                                
Sbjct: 914  KDRLPELDFELPLAGGDDPVSMSVTLRGVSELLRRHLPPDDILASYADHLDRVETSPMRG 973

Query: 902  -----ADRIDLLKSGFVDITDYKTGDNPKK--------------ETAQKLIDPQLSLEAA 942
                  D +  +      I DYKT    +               E  +     Q  L + 
Sbjct: 974  FLTGSIDAVLRIPGPSFVIVDYKTNRLGRGDLTAANYTRELMATEMMRSHYPLQALLYSV 1033

Query: 943  ALKAGSFSQIDCRKV----ANLFYIRLKQ--KFKIDCITNDKKKYSADELSEKSLKNLIE 996
            AL      ++             Y  ++              +     +L+ +    L  
Sbjct: 1034 ALHRYLRWRLPDYDPHRHLGGAQYQFVRGMLGPDSPPECGVFEWKPPAQLTVELSDLLAG 1093

Query: 997  I 997
            +
Sbjct: 1094 L 1094


>gi|119026324|ref|YP_910169.1| hypothetical protein BAD_1306 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765908|dbj|BAF40087.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 1065

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 892 ESIGIHLTGFADRID--LLKSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
           + + + L+G  DR++      G   V + DYKTG  P   +     D QL      L   
Sbjct: 850 DRLTVRLSGRIDRLEHRRTADGREQVRLIDYKTGKVPNGRSLFS--DLQLVCYQLGL--- 904

Query: 948 SFSQIDCRKVANL 960
           +F +   ++ A  
Sbjct: 905 AFPEHGGKRGAQA 917


>gi|114047350|ref|YP_737900.1| exodeoxyribonuclease V subunit beta [Shewanella sp. MR-7]
 gi|113888792|gb|ABI42843.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. MR-7]
          Length = 1269

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 89/887 (10%), Positives = 212/887 (23%), Gaps = 115/887 (12%)

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI------IIAGSTGSIPATAR 244
             S+ + ++  + N  +P      L  A   +     K         +I     + P    
Sbjct: 337  ISERFAKQKQQKNVLTPDDLLTTLAAAMQANPDTLPKAVASRFPVALIDEFQDTDPLQFA 396

Query: 245  LMSTVANHPNG-----------------AIVLPGLDCHIPTAIWNTIT--EKSTNITSSN 285
            + S +     G                   +L   D       +              + 
Sbjct: 397  IFSGIYQTRLGIDTQDPAAEPKPRTDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQTQ 456

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
              Y     Y  ++ L  + +     +      ++      V + +            +  
Sbjct: 457  AHYFLDTNYRSSRNL-VMGVNHLFAQHSDPFISQSIPFDPVKTPASAAAKQLVEHAPNSA 515

Query: 346  ENKIPNIQKCFSDVALIEADNEREE--AISIAIALRMSLDENK---------KKSALITA 394
              ++  + +  + +    A     E  A  I   L  +++            K  A++  
Sbjct: 516  ALRLKLLSEGETGLNKASARQTLAEDTAAEITRLLTQAVNGQCSTPKGPLIAKDIAILVR 575

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
            DRN A  +K  L++  I     +   +  T+ +  +  +L A+    D  A+ + +   L
Sbjct: 576  DRNEAAVMKTALSKRQIGAVFLSRDSVFETVEAREMALILRALASPKDERALRSALATAL 635

Query: 455  AKFGFPEKYLS-----RAKNALELVALRGNKNS-YDIMDLKSLVLDRIATQKNNTHVPHW 508
              +   + +       + +  LE             IM     + +         H P  
Sbjct: 636  LGYRAEQIHAFNQDEEQRQRLLEQFFELHQIWQKRGIMPALLSLANATQMVARRLHSPAS 695

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
             S    E      L  ++  + +T               +                    
Sbjct: 696  TSTDQAEQDAEVHLEANNGERRLTDFRHLAELLQQKATEIDGMSALLNWYEQQLIDNTGT 755

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              +   L  E+    + ++               +       R +            +  
Sbjct: 756  DEQQLRLESEQNLVQIVTIHKSKGLEYPVCFVPFVSLARDNRRRLTPMLYHRTNADGAQE 815

Query: 629  FILGTLESR--LLNFDTLILGGLNEGVWPKNTAKNPF-----LSRVMQSDLNLKTAEKYI 681
             +     +           L      ++   T           +        LK+     
Sbjct: 816  LVWDLEGTDEGWEQAKQETLAEDLRLLYVALTRPVYLCYLYIANHSRMLKAGLKSQLHET 875

Query: 682  GQAAH--------DFEMANGTRHLIYTRSLRENNIPTIASRW----LQRLLVLGGTDFFD 729
                         DF         +           +I          +L   G      
Sbjct: 876  AIGYLLGITDTDCDFSRLQHAAKALVAGLESSQPAISIEVVADDIEANKLHTGGSDSHTL 935

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA-- 787
            + +K  + Y    R   Y+    +    K  P  + +      ++      DP    A  
Sbjct: 936  SARKVSRQYRTPWRVGSYSGLVKNAPHAKATPGADDEVNAVLGTDTANSAADPLWQEALL 995

Query: 788  --RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                  +   + +        + G+  H ++  +      +   ++   + + +  +   
Sbjct: 996  QEAADTQAQPLLNRFSFERGANAGSFMHLVLELI---DFTQAPIDLPRELPKAMLQYGIA 1052

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI-------EKIFVNIPA----------- 887
                P ++  +  +         +  + I   +       +   V +             
Sbjct: 1053 PEWQPVLEDWYLEVLQAPLALMAQDNQLINPELCLAALAPQHTLVEMEFYLPLNRLKDTE 1112

Query: 888  ------------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL--- 932
                        ++  + +   L GF D     + G   I DYK+        A      
Sbjct: 1113 LNQLLRQFGYDTELQFDELQGMLKGFIDLTFEYQ-GKFYIADYKSNHLGDNIQAYHHSAL 1171

Query: 933  --------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                     D Q  L + AL      ++        +   +Y+ L+ 
Sbjct: 1172 KQAISDHRYDLQYILYSLALHRYLAMRLPNYDYDTHIGGCYYLFLRG 1218


>gi|283457709|ref|YP_003362295.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133710|dbj|BAI64475.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 639

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/602 (8%), Positives = 140/602 (23%), Gaps = 70/602 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA +E+R+   ++           ++                        
Sbjct: 66  PRVLALTFTLRAAEEMRTRLHQLGAHGV----QARTFHSAA------------------- 102

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI-----WLAKNLADIIDII 159
                  L +L+  W   +      +       +  +           L ++LA +I+  
Sbjct: 103 -------LRQLVYFWPQVVGGTFPSIVQNKASLITEAANRLRISTDRSLLRDLASLIEWA 155

Query: 160 ETEEKKWEDL-HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
           + +    + +   L  ++      +    ++   + + +   E N        +  +   
Sbjct: 156 KVQLLTPDTIMQRLSEKQLPS--AITPQNMQRIFQAYEDLKDERNLIDFEDVLLLTIAML 213

Query: 219 AE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            E       ++      ++       P   RL+       +   V+   D       +  
Sbjct: 214 EEDEKLAATVRNQYRHFVVDEYQDVSPLQQRLLDVWLGGRDDICVV--GDASQTIYSFTG 271

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
            T                    L                    S+           +   
Sbjct: 272 AT-----------------SRYLLDFARRYRGAHTVKLTRDYRSHSQVVELANRLLAARR 314

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---SA 390
           P      ++     ++ + +    DV      ++ +EA  IA  +R  ++++       A
Sbjct: 315 PHPDSSPHSWAPPLELMSQRGPGVDVEWFGYADDEQEAAGIAEDIRDLIEKDGVPPSEIA 374

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS-SILTSLLNAIFKLNDFMAIATL 449
           ++      +  ++  L    I   +               + +L  +    +    +   
Sbjct: 375 VLFRTNAQSAAIESALAAAHIPYQLRGAERFFERPEVKQAMLALRGSAKSTDGTEDVTRY 434

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALR----GNKNSYDIMDLKSLVLDRIATQKNNTHV 505
            +  L   G+ E+         +            +       + L   R   +      
Sbjct: 435 TRDVLGGLGYKEEGPLSGGATRQKWESLAALVHMVDMMAQHRQEQLQEHRANPRPGVPEP 494

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                              D        L +    K      + +    +  +       
Sbjct: 495 LPLTMHEVVATLNHRSEFNDAPQVNGVTLASLHAAKGLEWDAVFLCGLNEGLMPITFATT 554

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
            DE  +   L +    +    L+     T +       +    +  +   +  +      
Sbjct: 555 PDEVDEERRLLYVGITRARKYLWLTWTMTRTVGGRGQRKRSRFLDDIDPAKRRRRAESAG 614

Query: 626 ST 627
           S+
Sbjct: 615 SS 616


>gi|119714519|ref|YP_921484.1| exodeoxyribonuclease V, beta subunit [Nocardioides sp. JS614]
 gi|119535180|gb|ABL79797.1| exodeoxyribonuclease V, beta subunit [Nocardioides sp. JS614]
          Length = 1111

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 82/862 (9%), Positives = 179/862 (20%), Gaps = 72/862 (8%)

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179
            R +L + + DL  E+   L +        A    + + I        +            
Sbjct: 155  RARLVEDLDDLVKETVDDLYLRAFADAEPAFTHDEAMAIARAAVGDPQARLEPAGADRST 214

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE------HLMKGTKGPIIIA 233
                   F          R   L   S       L  A A+        M+     +++ 
Sbjct: 215  IAGRKVSFADAVRTELDRRKRRLGILSYDDLLSQLADALAQPGSAAAQRMRARWRIVLVD 274

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
                + P    ++    +     +++   D       +      +    +          
Sbjct: 275  EFQDTDPVQWEVLDRAFSGHATMVLI--GDPKQAIYAFRGGDVTTYLRAAETAQTRQTLA 332

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
             +       L   +  +         +    +           + + +   L     +  
Sbjct: 333  VNRRSDGPLLAAVQTLLAGAELGDERIVVHDVTAHHGESRLAGAPVPHPFRLRVVRRDTF 392

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDE---------NKKKSALITADRNLARRVKL 404
                   L         A  +A+ +R  L             +  A+I+        V+ 
Sbjct: 393  GRRGGSTLTVGQVRPHVARDLALDVRRLLASGATWCGEPIRPRDVAVISYRHADLATVRE 452

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L   G+   I+ G  +  T  +    +LL A+ + +    + +        FG     L
Sbjct: 453  ALLEVGVPAVIAGGGSVFATPAAIEWLTLLEALEQPHRSTRVRSAALT--CFFGHTAVEL 510

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                + L        +   ++   + L     A                +        + 
Sbjct: 511  DARGDDLTDEVADTLRGWVELFAGRGLAAVLEAANVAGLPERVLAEIGGDRRLTDLRHIG 570

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
            + + +          +  +              V   + +  D            +G   
Sbjct: 571  EALHEVTLVARHGLPSLLTWLRGQVTEGRAGRGVERTRRLDSDAAAVQLVTIHASKGLEY 630

Query: 585  SSLFSKIIETGSCIKANAIEWID--IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
              ++   +      K     + D      L  G                       L   
Sbjct: 631  PVVYVPALADRFVPKPTRPLFHDDGGTRCLDVGGARSDDGWADHCRRWADEEAGEWLRLL 690

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
             +        V          ++  +   L           +A                 
Sbjct: 691  YVATTRAKSQVVAWWAPTKNAVASPLHRMLMRDGDGPDGEMSASVPAAPAVPDDDAVVTL 750

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKK-RGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
                      S         G             + +                 R +   
Sbjct: 751  FSRWRERGGPSPEAAIHADPGADPPRPATPDLAARTFTRTIDTEWRRASYSSLSRVEVAA 810

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
            P  A       +  +     P AV    +L  D        P     G+L H ++     
Sbjct: 811  PAGAVVSEPEITGKEDEALAPEAVPVAPLLASDVPSPMAGLPVGATFGSLVHAVLE---- 866

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS-----FLEHEEKIQS 876
               +    ++   +   ID        P  +D                          Q 
Sbjct: 867  -HTDPEAVDLRAELLGHIDEQLG--WWPVDLDREELADALVAVCDSPLGPLAAGTTLRQV 923

Query: 877  SIEKIFVNIPAKMAIESI-----------------GIH------------------LTGF 901
            ++      +  ++ +                     +                   LTG 
Sbjct: 924  TLGDRLREMEFELPLGDGLLGDLRPLLERHLPPGDPVRAYTAHLDGPLGEQTLRGYLTGS 983

Query: 902  ADRIDLLKSG---FVDITDYKT 920
             D +  L+S       + DYKT
Sbjct: 984  VDVVLRLRSEAGPRYLVVDYKT 1005


>gi|325002914|ref|ZP_08124026.1| ATP-dependent DNA helicase [Pseudonocardia sp. P1]
          Length = 301

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 73/276 (26%), Gaps = 26/276 (9%)

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
            ++                                    +  +   +    L   G  + 
Sbjct: 6   ERTAQWPPDPFGDRADDVRAGADLVRAELRARAPRRPRRSRRSSTDQLALELPEPGPAEP 65

Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
             ++         W   +D    +    + +P   L       S S + +L +DP A+  
Sbjct: 66  APDVPDAEGDPEGWAADVDVLLAERAAAKERPTVALPG---RLSVSRLIELADDPDALAV 122

Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
           R        P          RGT FH  + +        +  E+     + + S  +   
Sbjct: 123 RLR-----RPVPLPPNPHARRGTAFHAWLEQRFGAERLLDIDELPGAADESVTSESDAAE 177

Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL 907
           L                      E    +  + + V +  +  +   G+ + G  D +  
Sbjct: 178 LAELQAAF---------------EASEWADRKPVDVEVSFETVLA--GVAVRGRMDAVFA 220

Query: 908 LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
              G   + D+KTG  P     +  +  QL+    A
Sbjct: 221 DPDGGWTVVDWKTGG-PAAPEREHAVAVQLAAYRLA 255


>gi|262404646|ref|ZP_06081201.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC586]
 gi|262349678|gb|EEY98816.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC586]
          Length = 1208

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 94/892 (10%), Positives = 206/892 (23%), Gaps = 115/892 (12%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLGYPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   V   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLAESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA----------- 659
                 E      E ++T   L   E  L   D   L      ++   T            
Sbjct: 764  YRESSEGKYYDAESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 660  -----KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
                  +   +   +S +     +   G  A   +            +L +        R
Sbjct: 824  LRNGNSSQEPTSAHRSAMGFLLQDGQEGGIADLQQALLK-----LCENLPDVAQCPPPKR 878

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            + Q        +     ++  Q      R   Y+         +  P  E         E
Sbjct: 879  FEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQE-----LPLLE 933

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
            +     D         L+      F         GT  H++  E+  ++   + P    +
Sbjct: 934  VGGFDLDSAQERDGAALESVERSIFNFPRGARP-GTFLHSLFEEVDFQQSAHSEPNTKII 992

Query: 835  MKQIIDSHFEKENLPPHIDIIWRH----------LFHKISHSFLEHEEKIQSSIEKIFV- 883
            +  +     E E LP    ++                +I  +    E +    IE +   
Sbjct: 993  LDLMESEQIETEWLPVLQQLVDTVLSTPLDGKVLRLQQIMAAQRLTELEFLLPIEVLDAP 1052

Query: 884  --------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
                    + P       +G H     L GF D +   + G   + D+K+        A 
Sbjct: 1053 TLNRITQRHDPLSAHAGDLGFHSVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAAY 1111

Query: 931  KL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                          D Q  + A AL     S++      +    +FY+ L+ 
Sbjct: 1112 HPQRLGSAMADHRYDLQYQIYALALHRFLRSRLAHYDYEQHFGGVFYLFLRG 1163


>gi|110598179|ref|ZP_01386456.1| exodeoxyribonuclease V, beta subunit [Chlorobium ferrooxidans DSM
            13031]
 gi|110340193|gb|EAT58691.1| exodeoxyribonuclease V, beta subunit [Chlorobium ferrooxidans DSM
            13031]
          Length = 1206

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 98/947 (10%), Positives = 217/947 (22%), Gaps = 166/947 (17%)

Query: 167  EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA----SSPVGYQIALMRAEAEHL 222
            E L AL  E++     L  + +    +    R    N             AL   E   +
Sbjct: 307  ESLSALVFERFV---ALKFELIAFYHENMPLRKRARNVRFFDDLLADLYHALDSEELASV 363

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT------- 275
            ++      +I     + P    +   +    +GA +    D       +           
Sbjct: 364  LRTQYRAALIDEFQDTDPVQYEIFRKIYG-GSGAPLFLIGDPKQAIYSFRGADIFAYLRA 422

Query: 276  -----EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 EK     +SN    +    +   +     +       + +       R       
Sbjct: 423  AEEVEEKRRFTLTSNWRSDSSLLDAFNTIFHQQRLPFLFEGIVYHPLTPGESREASGVVE 482

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI-------AIALRMSLD 383
                         +++    +            A+    E   +       +        
Sbjct: 483  RREGAVERPMQICLMDPGNESGTFTTGSAERFAAEACASEIEQLLSDGFNGSSFPPDCAL 542

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                  A+I      AR V+  L   GI+  + +   +  +  +  +  LL A+      
Sbjct: 543  NAG-DIAVIVRTHRQARMVQSTLRSRGISGVMRSDESIFVSSEAEEVRILLAALSDPGAE 601

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
              + T +   +      +         L +  L      + I   +  +           
Sbjct: 602  TLVRTALVTDILGLSGNDIDRLNRDETLWIPCLERFHRYHRIWLERGFMAMASEFM---- 657

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                     +E  +   +   D   +    L  ++             +      +    
Sbjct: 658  --------SNEAVRARLLRFSDGERRLTNVLHCFELLHREAEERRLGVEALASWFSERIA 709

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                       L  +E      ++    +     ++   +    +   +  G+ V    +
Sbjct: 710  AGESADEYQIRLESDEA-----AVRIVTVHVSKGLEYPVVFAPFLFGGINAGKDVVQFHD 764

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
            +   L               +   G       ++ A+   L+  ++      T  KY   
Sbjct: 765  EKGKL---------------VKDFGSGTIAENRSAAEKETLAENLRLLYVALTRAKYRCY 809

Query: 684  AAHDFEMANGTRHLIYTRSLR---ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                  +    +       L      +     S  L R +                  L 
Sbjct: 810  LFSARVVDGRKKESTLLSPLTYLFHASEEAKRSPGLVRAVTESVRALGAGEMAMQLTALA 869

Query: 741  WT-------RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI--KQLINDPYAVYARRIL 791
                     R ++     P    P P       P  +SF     +      +  ++R   
Sbjct: 870  EASGGSIGVRTIEAAEAPPIKHLPAPGEEEIFTPVVHSFRGHIERLWRVSSFTSFSRHEP 929

Query: 792  KLDFIPHFKKDPDR--------------------TDRGTLFHNIITELIKKRINKNTPEI 831
            K   +P                               G + H+I  +L        T  +
Sbjct: 930  KAAELPDRDDREGAMVQAAPQLNGERSIFSFPRGAGAGIMMHSIFEKLDFASPTGETIAL 989

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI--------EKIFV 883
                + +    F  E         W  +  ++    L       +               
Sbjct: 990  LAE-QSLARHGFAGE---------WLPVLIRMITDTLNTPLSSGTGFFTLGALKPRSWVT 1039

Query: 884  NIPA-------------------------------KMAIESIGIH--LTGFADRIDLLKS 910
             +                                    ++   +   L GF D +   + 
Sbjct: 1040 ELEFFFPLRQVSAKTLGEVLKRYGACSEGVDLLSVAGVLDFREVKGMLMGFIDMVFE-QD 1098

Query: 911  GFVDITDYKT-----------GDNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CR 955
            G   + D+K+            D+ ++   + L   Q  L   AL      ++       
Sbjct: 1099 GRYYLLDWKSNHLGNSVEEYRSDSLRRAMQENLYPLQYLLYIVALNRYLALRVAGYTYAS 1158

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002
                + YI L+         + ++  SA    +     LIE +T + 
Sbjct: 1159 HFGGVIYIFLRG-------VSPQEGESAGFFRDLPSAGLIEALTDIL 1198


>gi|297580957|ref|ZP_06942882.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae RC385]
 gi|297534783|gb|EFH73619.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae RC385]
          Length = 1208

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 87/843 (10%), Positives = 198/843 (23%), Gaps = 110/843 (13%)

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVL 259
                +    A +  + + L+      +     I     + P    + S +        +L
Sbjct: 352  FDDLLTQLSAALDNDEQGLLGERIRALYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLL 411

Query: 260  PGLDCHIPTAIWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDI 305
               D       +                          S+           +        
Sbjct: 412  MIGDPKQAIYAFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIY 471

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVA 360
              +   +    S     R   +     P  T              +      + C + + 
Sbjct: 472  SDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQ 531

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
             I   +        A   R    E    + L+               +   ++ +S    
Sbjct: 532  HILTAS----VSGAATFHRGESIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDS 587

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            +  +  +  +  LL A+++  D   +   V   L      E              +   +
Sbjct: 588  VFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFR 647

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                +   + ++    A          W +    E           +   +      +  
Sbjct: 648  QYRRLWSERGVLPMLRAVLTQRHIAERWLAESEGE---------RWLTDYLHISELLQQA 698

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                  +  +  +    +            ++  L  E     +       I     ++ 
Sbjct: 699  TREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEY 753

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
              +    +++     E      E ++T   L   E  L   D   L      ++   T  
Sbjct: 754  PLVFLPFVMSYRESSEGKYYDAESATTWVDLTGNEDALAKADQERLAEDLRLLYVALTRA 813

Query: 661  --NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
                F+      + N         ++A  F            +  +E  I  +    L++
Sbjct: 814  VYGCFIGIAPLRNGNSSQEPTSAHRSAMGF----------LLQDGQEGGIEDLRQALLKQ 863

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
               L   D       +         +LD                      +    +    
Sbjct: 864  CENL--PDVAQCPPPKRFEQAYQPPQLDERELSARELSQAIDRRWRVTSYSGLVMQSSHA 921

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKR 823
             +DP   +    +    +   ++                      GT  H++  E+  ++
Sbjct: 922  RHDPLQEFPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQ 981

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEK 873
              ++ P    +++ +     E E LP    ++                +I  +    E +
Sbjct: 982  SAQSEPNTKIILELMESEQIEAEWLPVLQHLVDTVLSTPLDGKALRLQQIMAAQRLTELE 1041

Query: 874  IQSSIEKIFV---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYK 919
                IE +           + P       +G H     L GF D +   + G   + D+K
Sbjct: 1042 FLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHAVQGMLKGFIDLVFQYQ-GRYYVLDWK 1100

Query: 920  TGDNPKKETAQKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIR 964
            +        A               D Q  + A AL     S++           +FY+ 
Sbjct: 1101 SNHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFLRSRLANYDYELHFGGVFYLF 1160

Query: 965  LKQ 967
            L+ 
Sbjct: 1161 LRG 1163


>gi|297622271|ref|YP_003703705.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093]
 gi|297163451|gb|ADI13162.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093]
          Length = 924

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 83/784 (10%), Positives = 168/784 (21%), Gaps = 99/784 (12%)

Query: 178 GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM---RAEAEHLMKGTKGPIIIAG 234
                      + A   +  RL  L    P   + AL      EA   ++     +++  
Sbjct: 177 SERERDLLALFEAAYARYRTRLGALLLPPPEIERRALELTRHPEAMARLRARYQLLLVDE 236

Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
                P   R    +        V+   D       +     +                 
Sbjct: 237 FQDVNPVQGRFFEALEASGLTLEVV--GDPKQAIYGFRHADVE----------------- 277

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
                L     + E    L          +  ++             +     ++     
Sbjct: 278 VFRGALRRARARGELAPPLTETRRHAQVVTRFLNHLTRAFAERGWGFSAAEAPEVTCAGP 337

Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
             ++   +E      EA    +    +     + +AL+      A R    L R    + 
Sbjct: 338 QAAERGRVEIHWVTGEAAMGELRAYEARVLAGRVAALLER---YAPREVAVLARSYAGLA 394

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
              G                               +  P         +       L   
Sbjct: 395 QMEG---------------------------ALRALGVPATMLQGRGYFERLEIRDLYHA 427

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
              G           SL           +     +  L+E        L   + + +  L
Sbjct: 428 LKVGLDPQ-----GLSLAAWLRGPFAGLSLGDVERVVLAEAPLATLERLAPEVSRRLERL 482

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                        L +          +  +       +  L               +   
Sbjct: 483 REVVRRGPVEALKLLVRAPLIGERRYVDFLEPRARENVDAL---------------LFAV 527

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
            +    +    ++ + RL   E      +    + +L    ++ L +  + L  L     
Sbjct: 528 AAHPPPDVGALLENLRRLSRQEDAGDVPQSGDGVSLLTVHRAKGLEWPVVALFDLGRFDT 587

Query: 655 PKNTAKNPFLSRVMQSDLN---------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
           P+  A          +               A          +  A+  R ++      +
Sbjct: 588 PRAAALYVAPGSGEVALEGSGAFAELEAAARARDAEESYRLLYVAASRARDVLLVSGSVK 647

Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
              P   +  L  L        +       Q +                  P        
Sbjct: 648 GGRPRGWAAALAALGFGPEARPWARGDFVLQRWPAQRVAPAAAAVADERALPAAPWTTRR 707

Query: 766 QPRTY-----SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
                     S S    L  D        +   D              GTL H  +++  
Sbjct: 708 FLEPPQPPLCSPSAAATL-GDEGDESCEPLPITDPDEGEPLPGRARAVGTLVHYAVSQNW 766

Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
             R   +   +         S  E+  +   +  +    +  +  + L   E  ++    
Sbjct: 767 SARSATHLRNLEAQEVMFAFSAAERAEILAEVAEL-LGRYEALLGAALPALEAREADF-- 823

Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
               +P  +          G  DR+     G   + DYKT    + E+  +    QL L 
Sbjct: 824 --AELPFALPFAGTVWQ--GVIDRL-YCAGGRWYLDDYKTDRTVRPESYYR----QLGLY 874

Query: 941 AAAL 944
           A A 
Sbjct: 875 ARAA 878


>gi|262170720|ref|ZP_06038398.1| exodeoxyribonuclease V beta chain [Vibrio mimicus MB-451]
 gi|261891796|gb|EEY37782.1| exodeoxyribonuclease V beta chain [Vibrio mimicus MB-451]
          Length = 1208

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 90/893 (10%), Positives = 204/893 (22%), Gaps = 117/893 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWTLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   V   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W      E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLVESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   +  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDTESATTWVDLTGNDEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F            +  +E  I  +    L++   L   D  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF----------LLQDGQEGGIEDLRQALLKQCENL--PDVA 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                           +LD                      +    +     +DP      
Sbjct: 872  QCPPPERFEQAYQPPQLDERELTARELSQAVDRRWRVTSYSGLVMQSSHARHDPLQDIPL 931

Query: 789  RILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINH 833
              +    +   ++                      GT  H++  E+  ++  ++      
Sbjct: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAQSEHNTQI 991

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRH----------LFHKISHSFLEHEEKIQSSIEKIFV 883
            +++ +     E E LP    ++                +I  +    E +    IE +  
Sbjct: 992  ILELMESEQIETEWLPVLQQLVDTVLSTPLDGKVLRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 884  ---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
                     + P       +G H     L GF D +   + G   + D+K+        A
Sbjct: 1052 PTLNRITQRHDPLSAHAGDLGFHSVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 930  QKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                           D Q  + A AL     S++           +FY+ L+ 
Sbjct: 1111 YHPQRLGSAMADHRYDLQYQIYALALHRFLRSRLANYDYELHFGGVFYLFLRG 1163


>gi|322383647|ref|ZP_08057398.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151859|gb|EFX44802.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 1350

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 76/746 (10%), Positives = 177/746 (23%), Gaps = 122/746 (16%)

Query: 94  LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
                  P ++ +   LEL   +L       +     +  +             L K L 
Sbjct: 278 EAPGGPLPYLATLDSDLELINTLLEAAENSWEAAYRAFQTAVFGKLKPCRGD-DLDKELQ 336

Query: 154 DIIDIIETEEKKW-----EDLHALKNEKYGMWWLLAA-------DFLKIASKYWTERLVE 201
           + +     E K       E++     E+Y       A         +   ++ + +   +
Sbjct: 337 EAVKQARNEVKDAVFRIKEEIFTRTQEEYKDELKRTAPVLHHLVRLVIDFAERYQQSKED 396

Query: 202 LNASSPV--GYQIALMRAE------------AEHLMKGTKGPIIIAGSTGSIPATARLMS 247
                     +    +               A    +     +++     +      ++S
Sbjct: 397 KGLVDFADLEHYCLAILRSEESTPERMIPSSAALDYQEQFAEVLLDEYQDTNRVQESIVS 456

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKST---------------------NITSSNT 286
            ++    G   +   D       +                                 S  
Sbjct: 457 LISKEAPGNRFM-VGDVKQSIYRFRLAEPGLFLSKYKSYTTSGEGEGKRVDLARNFRSRR 515

Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV----------ISKSFLPPDT 336
                  +   +++     +     R   V+   Y  +             S       T
Sbjct: 516 QVVDAVNFLFRQIMQESVGEIAYDIRAELVTGANYPETGQDLSVEMMLVDRSAEEQDEFT 575

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---------- 386
           +     D  E ++ +      +    E +  + EA +IA+ +R  L   +          
Sbjct: 576 AKGFGEDEAEPEMASEPAASLEFEAAELETAQLEARAIALKIRRLLGTEEGVRPFQVFDK 635

Query: 387 ----------KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                     +   ++         V   EL + GI           +     I+ SLL 
Sbjct: 636 RTGELRPATFRDIVILLRATQQWAPVLMEELKQQGIPAYADLNTGYFSATEVEIMLSLLK 695

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            I      +  A +++ P+ +    +    R               +             
Sbjct: 696 TIDNPAQDIPFAAVLRSPVVQLNADDLAQIRIAGPGLSFYDAAYLYANGQT--------- 746

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                +    P        E ++  +L +D +            +  S     +++D   
Sbjct: 747 AEGALSQAIQPAVSWSFKPEVQQKLLLFLDRL-----------ESWRSEARQGALADLIW 795

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                                                 +   +         +     D 
Sbjct: 796 NIYRETGFYDYVGGMPGGLQRQANLRALYDRARQYESTSLRGLFRFLRFVERMKETGGDL 855

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF-----------L 664
            T +   E+   + I+   +S+ L F  + + GL +    ++T+ +             L
Sbjct: 856 GTARSLGEQEDVVRIMSIHKSKGLEFPVVFVAGLAKIFNQRDTSGSFLIHKELGFGPKYL 915

Query: 665 SRVMQSDLNLKTA---------EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
              ++                 E    +    +      R  ++     ++    ++S  
Sbjct: 916 DPDLRVSYPTLPMLAIRRRMKLELLAEEMRVLYVALTRAREKLFLLGTVKSADKLLSS-- 973

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDW 741
             R L LG     D+   R + YLDW
Sbjct: 974 WSRYLGLGTWSLPDDEVARARSYLDW 999



 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 53/171 (30%), Gaps = 23/171 (13%)

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
            LK       +K P   +RG++ H ++  +           +   + +++           
Sbjct: 1165 LKKRPRFMEEKKPTPAERGSVVHAVMQNMPL-HETPTLSSVRQTLDKMLRLELLTTAQCE 1223

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-------------IH 897
             +         +I   F     K     + +   +P  + + +               + 
Sbjct: 1224 TVPE------EEILQFFQTSVGKRMVKADWVKREVPFSLGLPAPEVYPDIGYNGARDIVL 1277

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDN--PKKETAQKLIDPQLSLEAAALKA 946
            + G  D +   + G + + DYKT        E  +     QL L A A++ 
Sbjct: 1278 IQGIIDCLFEDEEG-LVMLDYKTDAVWQNDLEKLKDRYRLQLQLYARAVEE 1327


>gi|153828214|ref|ZP_01980881.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 623-39]
 gi|148876303|gb|EDL74438.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 623-39]
          Length = 1208

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 92/893 (10%), Positives = 207/893 (23%), Gaps = 117/893 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFEQIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRSLYPVAMIDEFQDTDPLQYSIFSRLYLDYPLCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   V   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLAESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDTESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F            +  +E  I  +    L++   L   D  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF----------LLQDGQEGGIADLQQALLKQCENL--PDVV 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                 +         +LD                      +    +     +DP      
Sbjct: 872  QCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPL 931

Query: 789  RILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINH 833
              +    +   ++                      GT  H++  E+  ++  ++ P    
Sbjct: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAQSEPNTKI 991

Query: 834  LMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV 883
            ++  +     E E LP    ++                +I  +    E +    IE +  
Sbjct: 992  ILDLMESEQIESEWLPVLQHLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 884  ---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
                     + P       +G H     L GF D +   + G   + D+K+        A
Sbjct: 1052 PTLNRITQRHDPLSAQAGDLGFHAVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 930  QKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                           D Q  + A AL     S++      +    +FY+ L+ 
Sbjct: 1111 YHPQRLGSAMADHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRG 1163


>gi|70734238|ref|YP_257878.1| exodeoxyribonuclease V subunit beta [Pseudomonas fluorescens Pf-5]
 gi|68348537|gb|AAY96143.1| exodeoxyribonuclease V, beta subunit [Pseudomonas fluorescens Pf-5]
          Length = 1230

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 95/932 (10%), Positives = 219/932 (23%), Gaps = 93/932 (9%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
               I  W         D+        P   + A   A      +D +   +   + L   
Sbjct: 271  FEKISAWAEDESVEQLDIGTGFTRLTPEGMSEAWKGAAPDHPGLDAMAGLKASLDAL--- 327

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKG 228
                       AA ++    +    R  E+     +    + ++++       L++    
Sbjct: 328  -PSPDAAVLQHAAQWVGARFEEEKRRRAEMGFDDMLLRLDSALQSDGGERLATLIREQFP 386

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSN 285
              +I     + P   R+  ++           +    D       +      +       
Sbjct: 387  VALIDEFQDTDPVQYRIFESIYRIEANDPETGLFLIGDPKQAIYAFRGADIYTYLRARQA 446

Query: 286  TTYSTHPQYSLAKLLDF---------LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
            T+   H   +  +             L  ++    +   +  E  G + V   +      
Sbjct: 447  TSGRLHTLGTNFRSSQAMVSAVNHVFLQAEQRPQGQGAFLFREADGENPVPFLAVAAQGR 506

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--------- 387
             +    D       N  +  S+  L  A   + +A + A A+   L+  ++         
Sbjct: 507  KEQLLVDGQPVPALNFWQLPSEQPLSGAQYRQHQAAACATAIVGLLNGGQQGRSGFVREQ 566

Query: 388  ---------KSALITADRNLARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                       A++  D   A+ V+ EL  R   ++ +S    +     +  +   L A 
Sbjct: 567  QALKGLLPADIAILVRDGKEAQAVRGELAARGVRSVYLSDKDSVFAAQEARDVLVWLKAC 626

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLS---RAKNALELVALRGNKNSYDIMDLKSLVLD 494
             + +    +   +          E              ++  RG +  +    +  ++  
Sbjct: 627  AEPDVERPLRAALASLTLNLPLLELERLNQDELAWEARVMQFRGYRAIWRSQGVLPMLRR 686

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
             +   +    +      ++  D E  +  + H+ + +         + +   +L+     
Sbjct: 687  LLHDFQLPQAL------MARSDGERVLTNLLHLSELLQQSAAELDGEQALIRHLAEHLAL 740

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                   Q + L+   +L  +    + K L      +    S    +             
Sbjct: 741  SGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFICSTKPVDGSRLPLHYHDAAG 800

Query: 615  GETVKPKIEKS--------STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
               V  +                 L  L   L         G+ +     +++    LS 
Sbjct: 801  KPQVSLRPTPELIALADEERLAEDLRLLYVALTRAQHACWLGMADLKRGNHSSSVLHLSA 860

Query: 667  VMQSDLNLKTAEKYIGQAAHDFE-----MANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
            +           +         +      A G   L      R       A+        
Sbjct: 861  LGYLLGGGDVLGESSALLRWLLDLQQGCAAIGVSELPVVDDQRYQPPRNEATLLAPLTPS 920

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR----PKPFPPLEAQPRTYSFSEIKQ 777
                + +           D          +    +     +   P   +    S  +I +
Sbjct: 921  RRAAENWWIASYSALRISDILGAGSTEAPENPQAQKLFDDERLDPEAPRETLASGGDIHR 980

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
                P        L                   +         +  I   +  + HL++ 
Sbjct: 981  FPRGPNPGTFLHGLLEWAGEEGFAAAPEAIEDAVARRCNRRGWQGWIPTLSDWLQHLLQA 1040

Query: 838  -------IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                          +          W            E   +            P    
Sbjct: 1041 PLPLGEGQAPVVLGQLTQYRVEMEFWFASHKVDVLKLDERVRQQTHQGAPRVTAEPV--- 1097

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSL 939
               +     GF D     + G   + DYK+               ++       D Q  L
Sbjct: 1098 --LLNGMFKGFIDLTFEHQ-GRYYVADYKSNWLGADDAAYTEQAMEQSILDNRYDLQYVL 1154

Query: 940  EAAALKAGSFSQID----CRKVANLFYIRLKQ 967
               AL     +++      R V    Y+ L+ 
Sbjct: 1155 YLLALHRQLKARLADYDYDRHVGGALYLFLRG 1186


>gi|198284627|ref|YP_002220948.1| exodeoxyribonuclease V subunit beta [Acidithiobacillus ferrooxidans
            ATCC 53993]
 gi|218666658|ref|YP_002427300.1| exodeoxyribonuclease V, beta subunit [Acidithiobacillus ferrooxidans
            ATCC 23270]
 gi|198249148|gb|ACH84741.1| exodeoxyribonuclease V, beta subunit [Acidithiobacillus ferrooxidans
            ATCC 53993]
 gi|218518871|gb|ACK79457.1| exodeoxyribonuclease V, beta subunit [Acidithiobacillus ferrooxidans
            ATCC 23270]
          Length = 1198

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 100/955 (10%), Positives = 220/955 (23%), Gaps = 90/955 (9%)

Query: 52   PTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE 111
            P  R    L         + +T+     +  D   E  +  +      NP   N      
Sbjct: 214  PASRLADWLPDALAAPRRRLATLKAQWAAEHDAFAEWLSGLVNGPKADNPLNGNTLSAAI 273

Query: 112  LARLILIWRNKLPDIIKDLYPESPLSLPISPANAI------------WLAKNLADIIDII 159
            ++R +   R+        +  E      +S +                 A+ L  +   +
Sbjct: 274  VSRALAALRDWADRSDPLIPDELDKCQRLSASKLPEYCKNKPPPVLHPAAETLDTLFREL 333

Query: 160  ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
            ET  +++  LH         W           +   +    +    S   YQ  L R   
Sbjct: 334  ETIAQQFTRLHGEIRTHAAAW----------INARLSRLKAQSGQVSFADYQRRLARVLH 383

Query: 220  EHLMKGTKGP--------IIIAGSTGSIPATARLMSTVANHPN---GAIVLPGLDCHIPT 268
            +                  +I     +     ++   + +  +     ++L   D     
Sbjct: 384  DKTQGPALAARLRQKYPAALIDEFQDTSALQYQIFDDIYHAADNNPDTLLLLIGDPKQSI 443

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
              +      S       T    +   +  +    L      +       +     +    
Sbjct: 444  YAFRGADIDSYLQARRLTEGRHYALGTNYRSSHALVSALNAIYTAAEHDDPQGAFAYAAP 503

Query: 329  KSFLPPD------TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
             +  P            +   I     P +    +   L + D     A   A  +   L
Sbjct: 504  GADNPLPYQPVQAHGHQKVWRIHGKAAPALTFWGAGEKLNKGDYLERCAAQAAECIVGLL 563

Query: 383  DENK---------------KKSALITADRNLARRVKLELT-RFGINIDISAGIPLSTTLH 426
            D  +               K  A++  DR+ A  ++  L  R   ++ +S    +  +  
Sbjct: 564  DNPEAGFAQEGEITRRLEAKDIAILVRDRHEAASIRQALHHRQLRSVFLSEQDSVYASEE 623

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
            +  L   L A+ +  D   +   +  PL            A +  E       +   D+ 
Sbjct: 624  ARELLLWLEAVAEPEDARRLRVALALPLLGQ---PLSALDAFHQNETAWEAQLEQFQDLS 680

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
                          +          L++ + E  +  + H+ + +           +   
Sbjct: 681  RQWRRQGVLAMLHHSIHQFGIAARLLTQPEGERRLTNLLHLGELLQQASATIDGPEALVR 740

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
            +L  +       +    + L+    L  +      K L      +    +C  A A  + 
Sbjct: 741  HLHQAIAAGSDQSDAHILRLESDAGLLRVVTIHAAKGLQYPLVFLPFIATCKAARANPFT 800

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             I +            + ++        + RLL                        +  
Sbjct: 801  VIHSAEGQPAIHWESGDTTAAERARLQEDLRLLYVALTRAEHALWLGLAAPKTAGTPIFA 860

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
                   L +       A    + A  +  ++                            
Sbjct: 861  GSAIAHLLGSERTARDLATLLEDCARLSPEIVVETLPDSIPTTLFVRPRNNAHNPPPEYT 920

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--SFSEIKQLINDPYA 784
                       +    R+L      P   R         +      + + +   +     
Sbjct: 921  ASFEKHWGVASFSHLVRELPADPAAPPTPRRAQAGAPWHRYPQGMNAGTFLHDQLQRLAQ 980

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                +I +  F+    K   +   G         L     +   P    L    +     
Sbjct: 981  NGFAQIGQDQFVEQLHKACTQAGLGDWVGETAEWLQAIVHSPLAPLTAALCD--LSDTLS 1038

Query: 845  KENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
            +       D +      ++     F   +           +              + GF 
Sbjct: 1039 EMAFWFPSDALRSDDLDRLCQQHIFPGADRPRLPQRVIHGM--------------MRGFM 1084

Query: 903  DRIDLLKSGFVDITDYKTGDNPKKETAQKL-----------IDPQLSLEAAALKA 946
            D +     G   + DYK+     ++                 + Q SL   AL  
Sbjct: 1085 DLVFEQG-GRYYVLDYKSNVLGSEDADYHAKALRDATLGHRYELQSSLYQLALHR 1138


>gi|76799128|ref|ZP_00781314.1| exonuclease RexA [Streptococcus agalactiae 18RS21]
 gi|76585514|gb|EAO62086.1| exonuclease RexA [Streptococcus agalactiae 18RS21]
          Length = 770

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/402 (10%), Positives = 113/402 (28%), Gaps = 35/402 (8%)

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGST 236
            L   F+   S+ + +  ++ NA          ++   E      L +     +++    
Sbjct: 357 ELLQSFVLDFSEQYLQEKIQENAFEFSDIAHFAIQILEENHDIRQLYQDKYHEVMVDEYQ 416

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS- 295
            +     R++  ++   NG       D       +     +  N       Y  +P    
Sbjct: 417 DNNHTQERMLELLS---NGHNRFMVGDIKQSIYRFRQADPQIFNDK--YKAYQDNPSQGK 471

Query: 296 -------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                       + LD        L +          +  +S      S  +      NK
Sbjct: 472 LIILKENFRSQSEVLDSTNSVFTHLMDEEVGDI----LYDESHQLKAGSPRQQERHPNNK 527

Query: 349 IPNIQKCFSDVALIEADNER-----EEAISIAIALRMSLDE---NKKKSALITADRNLAR 400
              +     +  + ++D+++      EA  +A  +     E     +   L+ + R    
Sbjct: 528 TQVLLLDTDEDDIDDSDSQQYDISPAEAKLVAKEIIRLHKEENVPFQDITLLVSSRTRND 587

Query: 401 RVKLELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
            +     R+GI +    G      ++   ++   L +I    +  A+  L++ P+  F  
Sbjct: 588 GILQTFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNE 647

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
            +      ++       +   + +       L+   ++  K +  +  +Q+         
Sbjct: 648 DDLTRIAIQDVKMAFYHKVKLSYHKEGHHSDLITPELS-SKIDHFMKTFQTWRDFAKWHS 706

Query: 520 AVLLVDHI---LQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
              L+  I         +      +       +++       
Sbjct: 707 LYDLIWKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFE 748


>gi|207738731|ref|YP_002257124.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           IPO1609]
 gi|206592099|emb|CAQ59005.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           IPO1609]
          Length = 691

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/556 (10%), Positives = 131/556 (23%), Gaps = 40/556 (7%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL     +   +      + +   ++RA  EL S    +  +        +S      + 
Sbjct: 37  TLGWRVAHLVAHGADPQRILLLTFSRRAASELSSRAGHLLARAMQGSTGTRSAAGTTYQT 96

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
                   + +       + L E A  I +  +       D      +       +    
Sbjct: 97  ALPWAGTFHGI-----GARLLREYAERIGLAPDFTIHDRSDSADLLNVVRHELNLSTKAR 151

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP- 207
              L      I +     E       +++  W  +    L+     + E     +     
Sbjct: 152 RFPLKQTCLAIYSRAINAESPLDAVLKQHFPWCAMWQAQLRTLFDAYVEAKQAQHVLDYD 211

Query: 208 ---VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
              + +      A     +      I++     +    A ++  +   P+G  +    D 
Sbjct: 212 DLLLYWHAMASDAGLAAEIGARFDHILVDEYQDTNRLQATILRAL--RPDGRGLTVVGDD 269

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +   T ++      + T           L       +  +     V      R 
Sbjct: 270 AQSIYAFRAATVRNILDFPRHFTRP----ARTVLLERNYRSTQPILDASNGVMRFATERF 325

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD- 383
                +                              L+   +E E+A  +A  +    + 
Sbjct: 326 AKTLWTDRASTHRP---------------------RLVSVRDEAEQARCVAEQVLQHREG 364

Query: 384 -ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               K  A++    + +  +++ELTR  I      G+      H   + S+L       +
Sbjct: 365 GLALKSQAVLFRTASHSAPLEIELTRRNIPFVKYGGLKFLEASHVKDVLSVLRWAENPRN 424

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM--DLKSLVLDRIATQK 500
            +A   +++            +  A             +          + ++  +AT +
Sbjct: 425 RIAGFRVIQLLPGAGPATAARVLDAMAEAADPIAALLAHEPPARLAGDWAALMTLMATLR 484

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
              H   W   L       A  L                         S   +       
Sbjct: 485 TPKHDAAWAGELGAVGAWYAPHLERLHDDAAVRQGDLDQLARMAATYASRERFLTEMTLD 544

Query: 561 LQNVCLDEHRKLPNLW 576
              +  DE        
Sbjct: 545 PPELTSDESGAPYRDE 560


>gi|300697919|ref|YP_003748580.1| atp-dependent dna helicase II protein (uvrD) [Ralstonia
           solanacearum CFBP2957]
 gi|299074643|emb|CBJ54200.1| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia
           solanacearum CFBP2957]
          Length = 710

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 83/748 (11%), Positives = 188/748 (25%), Gaps = 139/748 (18%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE----FIEITGKKS-----------T 73
           TL     +   +      + +   ++RA  EL S             +           T
Sbjct: 56  TLGWRVAHLVAHGADPQRILLLTFSRRAASELSSRAGHLLARAMQGNTGTRSAAGTTYQT 115

Query: 74  ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE 133
            LP   +   +       +      L P  +   R    A L+ + R++L          
Sbjct: 116 ALPWAGTFHGIGARLLR-EYADRIGLAPDFTIHDRSDS-ADLLNVVRHEL---------- 163

Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193
                  + A    L +    I       E   + +      ++  W  +    L+    
Sbjct: 164 ----NLSTKARRFPLKQTCLAIYSRAINAESPLDAVLK----QHFPWCAMWQAQLRTLFD 215

Query: 194 YWTERLVELNASSP----VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            + E     +        + +   +  A     +      I++     +    A ++  +
Sbjct: 216 AYVEAKQAQHVLDYDDLLLYWHAMVSDAGLAAEIGARFDHILVDEYQDTNRLQATILRAL 275

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
              P+G  +    D       +   T ++      + T               L+     
Sbjct: 276 --RPDGRGLTVVGDDAQSIYAFRAATVRNILDFPRHFTRP--------ARTVLLERNYRS 325

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            + + + SN   G     ++ F     +D  +T                  L+   +E E
Sbjct: 326 TQPILDASN---GVMRFATERFAKTLWTDRVSTHRPR--------------LVSVRDEAE 368

Query: 370 EAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
           +A  +A  +    +     K  A++    + +  +++ELTR  I      G+      H 
Sbjct: 369 QARCVAEQVLQHREGGLALKSQAVLFRTASHSAPLEIELTRRNIPFVKYGGLKFLEASHV 428

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             + S+L       + +A   +++                                    
Sbjct: 429 KDVLSVLRWAENPRNRIAGFRVIQ----------------------------LLPGAGPA 460

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
             + VLD +A   +             E           ++  +  L T K N       
Sbjct: 461 TAARVLDAMAEAADPIAALLA-----HEPPARLAGDWAALMTLMATLRTPKDNAAWAGEL 515

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +I  W    +  L +        L  L        +++ ++      + +  +  E   
Sbjct: 516 QAIGAWYAPHLERLHDDAAVRQGDLDQL------ARMAATYASRERFLTEMTLDPPE--- 566

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                +  +           L +     S+   +  + L    +G  P            
Sbjct: 567 -----LTSDESGDPYRDEDYLILSTIHSSKGQEWKAVYLLNAVDGCMP------------ 609

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
             +DL   + ++   +    +      R  +            +  R+        G   
Sbjct: 610 --ADLGAGSHDELEEERRLLYVAMTRARDHL---------DILVPQRFYVTQQTPNGDRH 658

Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
               + R           +     P   
Sbjct: 659 IYASRTRFIP-PALLPLFEACAWPPPEP 685


>gi|220919102|ref|YP_002494406.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956956|gb|ACL67340.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1111

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 70/750 (9%), Positives = 169/750 (22%), Gaps = 79/750 (10%)

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMS------TVANHPNGAIVLPG-----LDC 264
                    +     +++     + P  A ++        VA       ++PG      D 
Sbjct: 372  DRAVRAEYQALFDHVMVDEFQDTDPLQAEVVLYLCEQGAVAGDWRDVRLVPGKLTIVGDP 431

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                  +            +      H    +AKL      +   V+ L    + + G++
Sbjct: 432  KQSIYRFRRADIGVYAAVRAIVERGPH---VVAKLKANFRCEPALVRWLNGTFDGVLGKA 488

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQK----CFSDVALIEADNEREEAISIAIALRM 380
               +  F P   +      +                +  +  + +    EA ++A  LR 
Sbjct: 489  AADAPVFDPEAGTVANEPLLAGRDGGAPSAVQVLPLAAESGKKPELRATEATALAAWLRW 548

Query: 381  SLDENKKKSA----------------LITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
             ++  ++                   ++         +  EL R G+      G      
Sbjct: 549  LVEGKRRTIVDPATGALRPAGYGDVSVLVTATANLPLLFPELDRLGVPYAARGGTLFLED 608

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                     L A+   +D +A A L++ P       +   +RA +               
Sbjct: 609  PLHQQFLLGLRALADRDDGIAQAALLRPPFFAVDHDDLARARAAD--------PASTHAG 660

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
            ++  ++        ++     P   +     ++                L   +      
Sbjct: 661  VLRARAAQAMVRELRRTRLDRPPGATARDLLERTAFGRAAALGPNGAQRLDALRELCLVL 720

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                +                         L ++     L +     ++           
Sbjct: 721  DAVAA-----------------------EGLDYDATTARLRAWVDDAVQLDPPRPVGTDA 757

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
               +      G            +   G       +     +       W        + 
Sbjct: 758  VQILTVHQAKGLEFPVV------VLWDGCANLAARDVRAPFVVDRTGEAWAVALDGLEWE 811

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
                      +       +    +  A   R L+      E +   I  R +        
Sbjct: 812  EPEGGEVAGREKRYLDAERLRLVYVAATRARDLLVLPVAGEPDPEWITGRLV---SGEAA 868

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                            W  +L     +P          + A  ++ S    +        
Sbjct: 869  APVETLDPYLVGAEPAWAGELPAPAPRPPTDGSALAAEVRAAWQSASADATRPRFAPASV 928

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                  L        +    R +R +    +  + +   I     +        +     
Sbjct: 929  TGEAHALVEAAERPGEAGAPRPERTSRHGRVFGDTVHLAIGLVLRDPALAPAAAVARAAG 988

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
               L          +   ++   LE     ++    + +  P  +A+   G  + G+ D 
Sbjct: 989  ATGLSERRAEAADDVARALAA--LEQAGLRRAPGPDLQLEYP--VALAGDGKLVQGYVDL 1044

Query: 905  IDLLKSGFVDITDYKTGDNPKKETAQKLID 934
            + +     V   D+KT   P  +       
Sbjct: 1045 LGVRGGRVVV-VDFKTDAPPAGDVHASHAA 1073


>gi|310820608|ref|YP_003952966.1| ATP-dependent DNA helicase, uvrd/rep family protein [Stigmatella
            aurantiaca DW4/3-1]
 gi|309393680|gb|ADO71139.1| ATP-dependent DNA helicase, UvrD/REP family protein [Stigmatella
            aurantiaca DW4/3-1]
          Length = 1213

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 64/696 (9%), Positives = 160/696 (22%), Gaps = 51/696 (7%)

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            A +    D       +         + +              +          D      
Sbjct: 422  AFLCAVGDRKQSIYEFRGADVSVFALLAEKMVAEGG-AKGFLQDNRRSVPALLDFFNRAF 480

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                +        +    P   D+       ++ P +++     A   A+    +A ++A
Sbjct: 481  AGVLVASDPPRPYEVEYVPKEDDLSPVRPALSEEPAVERLLIGEAETAAEARERDANAVA 540

Query: 376  IALRMSLDE-----------------NKKKSALITADRNLARRVKLELTRFGINIDISAG 418
              LR+ L                        A++          +  L R G+   +  G
Sbjct: 541  HRLRLMLAPGAAPCVAHEDGQRLRPARGGDVAILLRTFTHLEVYRQALIRHGVPHRVLRG 600

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
                       L SLL  +   +D +A+A +++ PL        +   + +    +A   
Sbjct: 601  RGFYGAQEVLDLASLLALLADPDDSLALAAVLRSPLVGLSDASLFRLSSGDQGLSLA--- 657

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                    DL +  L      +    +    S   E D+     L+   +          
Sbjct: 658  ---GVLQKDLAACELAPNERLRLERFLTALPSLRRERDRLGVKALLQVAMNITGYREAMA 714

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS-- 596
                +   + +I     L     +            L    E +   +    +       
Sbjct: 715  GTPYAEQASANIDKLLALAGRRDERGTGGCVAFARELRMLVESEPTEAQADLLDAGDPRA 774

Query: 597  --CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
               +  +  + ++    ++ G     +  +S+ +         L  +    L   + G +
Sbjct: 775  VQLLTIHRAKGLEWPVVVVPGLG-GKRRSESARVHFERIHGLVLRPWLPDTLESFSSGRF 833

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
                 +   L     ++                       + +  +     +      + 
Sbjct: 834  EAVKDE---LDARGLAEYRRLLYVALTRARDVLLLSGTAEKRVPLSWWTMIDGRLGTDAA 890

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
               R+  +                                 R              S   
Sbjct: 891  LRARVRDVEAAALPPPADPLPPDAKALVEAEARVEAALQRVRGSTAVREPVSAV-ASAEA 949

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE---------LIKKRIN 825
            ++  I  P        L L     ++               +           L+++   
Sbjct: 950  LQDFIICPRRYRYIHQLGLTGHRPWELPAKSRPIWVEAGAWVETQGAPQMARLLLRELDF 1009

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK---IF 882
            +         +  + +  +     P  + +   L  K++  FL        +      + 
Sbjct: 1010 RWASVPVPERRAHLTALLQDLGHLPEEEGMEAAL--KMAERFLGTPFARILAASPSSALH 1067

Query: 883  VNIPAKMAIESIG----IHLTGFADRIDLLKSGFVD 914
              +P  + + S G    + + G  D +     G   
Sbjct: 1068 RALPFGLELSSPGARGRVAVEGELDLLWETPEGEAW 1103


>gi|145593295|ref|YP_001157592.1| hypothetical protein Strop_0737 [Salinispora tropica CNB-440]
 gi|145302632|gb|ABP53214.1| hypothetical protein Strop_0737 [Salinispora tropica CNB-440]
          Length = 302

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 54/197 (27%), Gaps = 14/197 (7%)

Query: 741 WTRKLDYTTKQPHYKRPKPFPP--LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
              +   T  +P    P+      +  +    + S++    + P       + +      
Sbjct: 3   RAGRPSTTPPRPRVAEPEQLGFEGMPERLFVCTPSKLGAYADCPRRYRYSYLDRPAPPKG 62

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
                +    G   H  +       +++     +  +  ++   + ++    H     R 
Sbjct: 63  PAWAHN--SLGASVHTALKNWYALPVDRR---RSAGLATLLKGTWVRDGYRDH--EQERV 115

Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL---KSGFVDI 915
            F         +   +    E + V     +    +     G ADRID         + I
Sbjct: 116 AFRHALGWLEAYVATLDPETEPLGVERVVAVKTGVLAF--NGRADRIDSRVGPAGAELAI 173

Query: 916 TDYKTGDNPKKETAQKL 932
            DYKTG         + 
Sbjct: 174 VDYKTGRAGLDTDDARG 190


>gi|83749766|ref|ZP_00946741.1| ATP-dependent DNA helicase pcrA [Ralstonia solanacearum UW551]
 gi|83723556|gb|EAP70759.1| ATP-dependent DNA helicase pcrA [Ralstonia solanacearum UW551]
          Length = 710

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/556 (10%), Positives = 131/556 (23%), Gaps = 40/556 (7%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL     +   +      + +   ++RA  EL S    +  +        +S      + 
Sbjct: 56  TLGWRVAHLVAHGADPQRILLLTFSRRAASELSSRAGHLLARAMQGSTGTRSAAGTTYQT 115

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
                   + +       + L E A  I +  +       D      +       +    
Sbjct: 116 ALPWAGTFHGI-----GARLLREYAERIGLAPDFTIHDRSDSADLLNVVRHELNLSTKAR 170

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP- 207
              L      I +     E       +++  W  +    L+     + E     +     
Sbjct: 171 RFPLKQTCLAIYSRAINAESPLDAVLKQHFPWCAMWQAQLRTLFDAYVEAKQAQHVLDYD 230

Query: 208 ---VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
              + +      A     +      I++     +    A ++  +   P+G  +    D 
Sbjct: 231 DLLLYWHAMASDAGLAAEIGARFDHILVDEYQDTNRLQATILRAL--RPDGRGLTVVGDD 288

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +   T ++      + T           L       +  +     V      R 
Sbjct: 289 AQSIYAFRAATVRNILDFPRHFTRP----ARTVLLERNYRSTQPILDASNGVMRFATERF 344

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD- 383
                +                              L+   +E E+A  +A  +    + 
Sbjct: 345 AKTLWTDRASTHRP---------------------RLVSVRDEAEQARCVAEQVLQHREG 383

Query: 384 -ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               K  A++    + +  +++ELTR  I      G+      H   + S+L       +
Sbjct: 384 GLALKSQAVLFRTASHSAPLEIELTRRNIPFVKYGGLKFLEASHVKDVLSVLRWAENPRN 443

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM--DLKSLVLDRIATQK 500
            +A   +++            +  A             +          + ++  +AT +
Sbjct: 444 RIAGFRVIQLLPGAGPATAARVLDAMAEAADPIAALLAHEPPARLAGDWAALMTLMATLR 503

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
              H   W   L       A  L                         S   +       
Sbjct: 504 TPKHDAAWAGELGAVGAWYAPHLERLHDDAAVRQGDLDQLARMAATYASRERFLTEMTLD 563

Query: 561 LQNVCLDEHRKLPNLW 576
              +  DE        
Sbjct: 564 PPELTSDESGAPYRDE 579


>gi|56476966|ref|YP_158555.1| ATP-dependent exoDNAse beta subunit [Aromatoleum aromaticum EbN1]
 gi|56313009|emb|CAI07654.1| ATP-dependent exoDNAse beta subunit [Aromatoleum aromaticum EbN1]
          Length = 1229

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 90/862 (10%), Positives = 195/862 (22%), Gaps = 77/862 (8%)

Query: 211  QIALMRAEAEHLMKGTKGPI---IIAGSTGSIPATARLMSTVANHPNGAI-VLPGLDCHI 266
              AL  A+   L           +I     + P    +  ++         +    D   
Sbjct: 375  HEALAGADNPWLAAALHQRYPVALIDEFQDTDPLQFEIFRSIYATGGRHGGLFLVGDPKQ 434

Query: 267  PTAIWNTITEKSTNITSSNTTYS---THPQYSLAKLLDFLDIKREDVKRLGNVS------ 317
                +      +     S        +H Q S+  L+D  +           +       
Sbjct: 435  AIYSFRNADLHTYLHARSEADTRYTLSHNQRSVGGLIDACNALFTANPAAFVLDGLAYET 494

Query: 318  ----NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI- 372
                 +   R +  S +  P            +  +P      +  A   A         
Sbjct: 495  VSEGAKPRQRFVDSSAAADPASLRVWWIAPDADGVLPLRAAVVARAAAATAAEIVRLVGE 554

Query: 373  -SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
             +                A++    +   R++  L   G+     +   +  +  +  L 
Sbjct: 555  GAAGHITIGPRALAPGDIAVLVKSHSQGARMREALAALGVGSVELSQQSVFHSPDAEELE 614

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
             +L AI +      ++  +      F         A  A  L  +       ++   + L
Sbjct: 615  RVLVAIAEPAHLPLLSAALATAPMGFDAAALDALAADEAELLRVIARFTELREVWLARGL 674

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDK-ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
             +                +R   E +    + L + + +      +              
Sbjct: 675  GVMLRRWIVQEGINARLLARDDGERRLTNLLHLAECLHEAAADHPSPDALLRWFATRRRE 734

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
            +  ++ T   L++          +     E   +   F      G         + D   
Sbjct: 735  AGASEATQVRLESDRNLVQIVTIHRSKGLEYGVVFCPFLWDGFPGRGDDGEGCVYHDADG 794

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
             L+          +            R   F  LI   +   V+        +L +  ++
Sbjct: 795  GLLLD---FRPSARDDDDVKAVMRRERDAEFLRLIYVAMTRAVYRCYLVAGCYLKKNGKT 851

Query: 671  DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
                   E            A  +        L  ++I    +R L+R           N
Sbjct: 852  A---SPTESTRSLLNWLVAGAGTSHAEWLRHKLTTDDIEAAWARLLER---AEPDLAIVN 905

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
            L   G   L                   P           S     +     +   A  +
Sbjct: 906  LPAGGSARLASAEPAADALHVLPPPVRLPSAWRIGSFSALSHGAGHEAAAQDHDARALLV 965

Query: 791  LKLDFIPHFKKDPDRTDRGTLF---HNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
              +D            D   LF        + I     +     +      I +   +  
Sbjct: 966  APIDGATSIAPAAAPGDDDILFFPRGPTAGDCIHAVFERLDFPASASRTPAIAAALTEHP 1025

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEE-----KIQSSIEKIFVNIPA--------------- 887
                       +  ++    L           +    +  V +                 
Sbjct: 1026 QRAPGGAPLARMLERLVEDVLATPLPGGIVLGRLDCRRKLVELGFHLPAPRLSAEALNDW 1085

Query: 888  ---------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG---------DNPKKETA 929
                     ++A  ++  +L GF D +     G   + D+K+             + E A
Sbjct: 1086 LARAGYHVPRLAFGALAGYLKGFIDLVFEH-DGRFYVLDWKSNHLGFTPEDYAPARLEEA 1144

Query: 930  QK--LIDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSA 983
             +      Q  L A AL       +      R      Y+ ++       +         
Sbjct: 1145 MRAHGYHLQHLLYAVALHRHLGRTLPGYDFERHFGGALYLFVRGVRPGWRLGEHPAGVYF 1204

Query: 984  DELSEKSLKNLIEIVTLLQNGE 1005
                  +L +L  ++  +   E
Sbjct: 1205 HRPDAATLASLDRLIGGVPAPE 1226


>gi|229494476|ref|ZP_04388239.1| exodeoxyribonuclease V, beta subunit [Rhodococcus erythropolis SK121]
 gi|229318838|gb|EEN84696.1| exodeoxyribonuclease V, beta subunit [Rhodococcus erythropolis SK121]
          Length = 1105

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 96/1082 (8%), Positives = 231/1082 (21%), Gaps = 156/1082 (14%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLN 100
             ++ V +   ++ A QELR    E       + + P      D   +   A L  + +  
Sbjct: 42   DISQVLLVTFSRAATQELRERARERFAGVSAALVDPEAARRSD---DDLVAYLATADDEE 98

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI-----WLAKNLADI 155
              V   + L  LA              + +     ++    P          L   +   
Sbjct: 99   IGVRRRRLLRALAEFDAGTITTTHSFCQRMLDGLGIAGEREPDTTFVESVDDLISEVVSD 158

Query: 156  I-----------------DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW--T 196
            +                 D +        D  A+               L  A+      
Sbjct: 159  LYLSRYSRTDSSPPFSTKDALAIARSAVGDGQAILEPDGEEETAPGQRVLFAAAARLEVE 218

Query: 197  ERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIPATARLMST 248
             R               L            A   ++     ++I     + P    ++  
Sbjct: 219  RRKRTKGIRDFNDLLTLLHGVLTDPEYGPVACRRVREKFKVVLIDEFQDTDPLQWDILRL 278

Query: 249  VANHPNGAIVLPGLDCHIPTAIWNTI------TEKSTNITSSNTTYSTHPQYSLAKLLDF 302
                     ++   D       +                     T +      L   L+ 
Sbjct: 279  A--FHGHTTLVLVGDPKQAIYAFRGAEVLSYLDAVDQADAHQELTTNWRSDPGLLAALEH 336

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            L                            +P     +  T                 + +
Sbjct: 337  LYGGAALGNEGIVAHPVEASHKKSRLFGPVPMRVRHLPRTGAGPLNRSGFPAVGRLRSRV 396

Query: 363  EADNEREEAISIAIALRMSLDENKKK-----SALITADRNLARRVKLELTRFGINIDISA 417
              D   +    +    R+++D + +       A++         ++  L   G+   ++ 
Sbjct: 397  ADDVAADVVALLGGDARLAVDGDPRPVEPGDVAVLVRTHKHVAMIRDALDAVGVPSVLTG 456

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  +  T  ++    LL AI + +    +      P+      E          + V   
Sbjct: 457  GSSVFATPSATQWLWLLQAIEQPHRSDRVRLTALSPIFGRTSEELD-----KDGDNVVAE 511

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                      L + V      ++ +      +  L+    E     + H+ Q +  + T 
Sbjct: 512  LAGQLRSYSGLFARVGFAAVFERISAETNLEKRVLAAPSGERDFTDLRHVAQLLGRVATE 571

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
            +                   V  L +   D                 +++    +     
Sbjct: 572  EAFG------------LSALVRWLSDRIKDPTSGSATDRSRRLDSDAAAVQIATVHATKG 619

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            ++   +        +    +    +       IL         ++        E    + 
Sbjct: 620  LEFPIVYVPFSWESVGGFNSPTQLLHDPEGRRILDVGGQEGPGYNARKTVAEAEEAGEEL 679

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY-TRSLRENNIPTIASRWL 716
                  L+R     +          ++     M   T  +    R ++  +  T A+R  
Sbjct: 680  RLLYVALTRAQCQLVLWWAPSYGTSRSPLHRLMLGRTPGIAEPARVVKVLDDGTTAARLA 739

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
                         +++  G                      +    L+   R  S+S + 
Sbjct: 740  T---WPAAASDVISVEPVGPHPPSPVHWSRAAADVTELAAARFDRDLDTLWRRTSYSALT 796

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
               +         +   +      +  D  D G++  + +                  + 
Sbjct: 797  AGAHHAVTTTGSEV---EDPEKDDEPEDSVDLGSITPSPLEAFPSPMNGLPAGAAFGTLV 853

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI------EKIFV------- 883
              +    +          +       +S    E + +  +          +         
Sbjct: 854  HEVLEVVDTAAADLRA-ELGMRCAEAVSVRAAEVDSEALADALYLVMQTPLGFGTLATIA 912

Query: 884  ------NIPAKMAIESIG------IHLTGF------------------------------ 901
                   +  ++ +          + L G                               
Sbjct: 913  PKDRLPELDFELPLAGGDDPVSMSVTLRGVSELLRRHLPADDILASYADYLDRVETSPMR 972

Query: 902  ------ADRIDLLKSGFVDITDYKTGDNPKK--------------ETAQKLIDPQLSLEA 941
                   D +  +      I DYKT    +               E  +     Q  L +
Sbjct: 973  GFLTGSIDAVLRIPGPSFVIVDYKTNRIGRGDLTAANYTRELMATEMMRSHYPLQALLYS 1032

Query: 942  AALKAGSFSQIDCRKV----ANLFYIRLKQ--KFKIDCITNDKKKYSADELSEKSLKNLI 995
             AL      ++             Y  ++              +     +L+ +    L 
Sbjct: 1033 VALHRYLRWRLPDYDPHRHLGGAQYQFVRGMLGPDSPPECGVFEWKPPAQLTVELSDLLA 1092

Query: 996  EI 997
             +
Sbjct: 1093 GL 1094


>gi|120402221|ref|YP_952050.1| exodeoxyribonuclease V subunit beta [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955039|gb|ABM12044.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
           vanbaalenii PYR-1]
          Length = 1097

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 84/862 (9%), Positives = 201/862 (23%), Gaps = 69/862 (8%)

Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
            L+    + + +I+ DLY          P      A +LA      E       +L    
Sbjct: 144 ELVESLDDLVTEIVDDLYLAHFGQDHDEPLLTYADALSLAR-----EVVGNAHTELRPTD 198

Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP---- 229
                  ++    F +        R   L           L +A                
Sbjct: 199 PPPGSDPFVRVQ-FARAVCAELETRKRRLGILHYDDLLSRLAKALEPQDSPARMRMQHRW 257

Query: 230 --IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT----EKSTNITS 283
             +++     + P   +++    +    A V+   D       +          + +   
Sbjct: 258 SIVMVDEFQDTDPVQWQVIDCAFSGH--ATVILIGDPKQAIYAFRGGDIVTYLHAVSTAD 315

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T  T+ +     +     + R+       +            +    P  +  R   
Sbjct: 316 RQKTLGTNYRSDGPLVDSLQAVMRDAQLGDPRIVAHRVEAHHRDHRLAGAPRNAPFRLRV 375

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS-----ALITADRNL 398
           +  ++          +  +     ++ A  IA  L        +       A+I      
Sbjct: 376 VTRDQFGTRPDRVVAIDQLRRHIPQDMAADIAALLASDATFCDRPVQPGDVAVIVESHRD 435

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF-------------MA 445
                  LT  GI    +    + T+  +     LL A  + +                 
Sbjct: 436 GHACFDALTAAGIPAVYTGDSDVFTSPAADDWMCLLEAFDQPHRSGLVRAAATTMFFGET 495

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
             +L            + L +  +      +     +  +  +   VL  +  +++ T +
Sbjct: 496 AESLAAEGDTLTDRVAETLRQWADFARDRGVAAVFEAAQLGGMGERVLSWVDGERHMTDL 555

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
            H    L          L                         S +   ++    +    
Sbjct: 556 AHLTQVLHGTAHREHFSLPALRDWLRGQRDERSGAPERNRRLDSDAAAVQIMTVWVSKGL 615

Query: 566 LDEHRKLPNLWFEEE-------------------GKTLSSLFSKIIETGSCIKANAIEWI 606
                 LP  +                       G+      +   +       + +   
Sbjct: 616 QFPVVYLPFAFNRNIQTRDVVTFHDGDIRCLHIGGERSPDHAAAQQQGRREAAGDDVRLT 675

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            +       + V      +       +   R       ++    +         +     
Sbjct: 676 YVAMTRAQSQVVAWWAPSNDEPNGGLSRLLRGRAPGDPVVPDRCDPPRID--DPDAMAQL 733

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
              SD      E+ +  A+   E+ +    L      R  +     + +   +       
Sbjct: 734 RAWSDAGGPVLEESVIAASVTVELPSPAEDLDVRHFHRRIDTSWRRTSYSGLIRAAESEQ 793

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKR-PKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                +       D   ++          + P P   L    +  +         DP+A 
Sbjct: 794 TGVGSEPEVVELDDEAGEVPVPGAGGGGDQMPSPMADLPMGAKFGTLVHAVLETADPFAT 853

Query: 786 YAR-------RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
                     R   L +               L    +  L      ++    + L +  
Sbjct: 854 DLAAELESHVRRHSLWWPVDVPAADLAAALVPLHDTPLGPLAPGVTLRDIGLRDRLREME 913

Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
            +      +    +  I      ++  + L  ++ +    E++       +A +S+  +L
Sbjct: 914 FEFPLAGGDRRVEVPDISLADVGRLLAAHLPADDPLAPYAERL---TGGTLAAQSLKGYL 970

Query: 899 TGFADRIDLLKSGFVDITDYKT 920
            G  D +  +      + DYKT
Sbjct: 971 NGSVDAVLRVGD-RYLVVDYKT 991


>gi|288916326|ref|ZP_06410705.1| hypothetical protein FrEUN1fDRAFT_0398 [Frankia sp. EUN1f]
 gi|288352305|gb|EFC86503.1| hypothetical protein FrEUN1fDRAFT_0398 [Frankia sp. EUN1f]
          Length = 275

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 70/254 (27%), Gaps = 44/254 (17%)

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            S+S++ +           RI +++ +P           G  FH  +  L +         
Sbjct: 13   SYSQLSEWAQCGLKYRLHRIDRVERLPAPW-----LATGLAFHRTVE-LYETSGGMPPDA 66

Query: 831  INHLMKQIIDSHFEKENLPPHI-DIIWRHLFHKISHSFLEHEEKIQSSIEKI-------- 881
               +     D               +W +       + +E        + +         
Sbjct: 67   AVDVFIAEFDRELLAIEQRTTYPRHLWLYGGRGGVEADIERRRAQGPDMIRAYIDATLTS 126

Query: 882  ------------FVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
                         V +P  + +   E+  + L G  D + + ++G V + D+KTG     
Sbjct: 127  PVEVYELPDGSPAVEVPFVLPLWETETAVVRLVGAVDLVYVTRAGSVRVRDHKTGAKEPV 186

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986
                     QL +   A++A     +    V    Y   K+      I          E+
Sbjct: 187  GNR------QLGIYGLAVEA-----LFGEVVTEGDYYMAKKGAATPPIPLSGYT---PEV 232

Query: 987  SEKSLKNLIEIVTL 1000
                 + L   +  
Sbjct: 233  MHAEFQALETALAE 246


>gi|283852748|ref|ZP_06370012.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
 gi|283571829|gb|EFC19825.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
          Length = 733

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 84/802 (10%), Positives = 197/802 (24%), Gaps = 137/802 (17%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL--RSEFIEITGKKSTILPIIKSLGDVV 85
            T+V          +  AS+ +   T++A QE+  R+  +   G          +     
Sbjct: 34  RTIVYRLARLVAGGVDPASILLLTFTRKAAQEMLSRAGLLLAMGPDGVSGVSGGTFHAFA 93

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                     +       + + +                D    L              +
Sbjct: 94  FATLR-RYHAAAGYPDGFTVLDQ---------------ADSEDVLGQAKDKLGIGKGDRS 137

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
                 +  ++     +E    D+ + +      +       L  A   +      L+  
Sbjct: 138 FPRRSAILGLLSKARNKEMAVADVLSREAFHLLPYADAIGQ-LGEAYTAFKTDHNLLDYD 196

Query: 206 SPVGYQIALMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
             +      +    +     +     I++     +    ARL   +A  P    V+   D
Sbjct: 197 DLLFRLEQTLLGNPDLADYLRVRHRYIMVDEYQDTNRVQARLTRLLA--PASGNVMAVGD 254

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                  +   T  +          +T         +  L+      + +  ++N +   
Sbjct: 255 DAQSIYAFRGATVDNILDFPDLYPGTT---------VVKLEQNYRSTQPILTLTNAILAN 305

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
           +    +  L         T   +  +P + + FSD+          +A  +A  +R    
Sbjct: 306 AGRKFEKHL--------FTTREDGPVPELMRPFSDLT---------QAAMVAAKVRELSR 348

Query: 384 ENK-KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                + A++      +  +++EL + GI      G+  S   H   + S L  +    D
Sbjct: 349 TYPLHEIAVLFRAGYQSYALEVELGKTGIPFQKFGGLKFSDAAHVKDVLSYLRLVRNTAD 408

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
           F A + ++             +  A  A       G++     M  ++     +    + 
Sbjct: 409 FPAWSRVLAFVPGIGPKTATKIFEAIQA-------GDRGVLGKMAARTAEFKTLIEFLDT 461

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                               L++ +++   PL                           +
Sbjct: 462 LRGLPPV----------PAALLERVVEAYAPL-------------------------LAE 486

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
               D  R+   L   ++           +                   +I+      K 
Sbjct: 487 KFPDDYPRRQAGLDQLQQIAAAYHDLDAFLADL----------------VIENPGEDRKK 530

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
            +   + +     S+ L +  ++L  L +  +P              S   L   E    
Sbjct: 531 TREDHVVLSTVHSSKGLEWSAVLLIDLVDERFP--------------SRHALSRPEDLEE 576

Query: 683 QAAHDFEMANGTRHLIYTRS-------LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
           +    +      R  +   +             P + S +L+ L      +  + L    
Sbjct: 577 ERRLLYVACTRAREYLALFAPETVYQRTTGGCSPALPSIFLRELPPGPLKERRERLGGSS 636

Query: 736 --------QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                               +        P+P P           +   + +        
Sbjct: 637 SGTFAAGCAPPRAAAGSASMSGSPRPGAGPRPAPAGAPGNGAGPANGSARALGYCRHKIF 696

Query: 788 RRILKLDFIPHFKKDPDRTDRG 809
            R   +  +   K   +  D G
Sbjct: 697 GRGKIIATLDGGKYRVNFPDFG 718


>gi|297157447|gb|ADI07159.1| putative ATP-dependent DNA helicase [Streptomyces bingchenggensis
           BCW-1]
          Length = 763

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 72/706 (10%), Positives = 166/706 (23%), Gaps = 80/706 (11%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           +   +    R     P   ASV     T RA  E+R    ++           ++     
Sbjct: 62  ITHRIAYGVRAGVFQP---ASVLAVTFTNRAAGEMRGRLRQLGAGGV----QARTFHSAA 114

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN- 144
                                     L +L   W   +   +  L       +  + A  
Sbjct: 115 --------------------------LRQLQYFWPKAVGGEVPRLLERKVQLVAEAAARC 148

Query: 145 -AIWLAKNLADIIDIIETEEKK---WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                   L D+   IE  +      ED  A+  +        AA+ +      + +   
Sbjct: 149 RVRLDRNELRDVTGEIEWSKVTQTVPEDYPAVAAKSGREAPRDAAE-IARIYGMYEQLKR 207

Query: 201 ELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
           E          +  +    E       ++      ++       P   RL+         
Sbjct: 208 ERGVIDFEDVLLLTVGVLQERHDIADQVRRQYQHFVVDEYQDVSPLQQRLLELWLGDRES 267

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             V+   D       +   T        +      HP  ++ KL+       + V     
Sbjct: 268 LCVV--GDASQTIYSFTGATPDHLLNFRTR-----HPGATVVKLVRDYRSTPQVVHLANG 320

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
           V  +  GR+                       ++ + ++   D       +E  EA  +A
Sbjct: 321 VLAQARGRAA------------------DHRLELVSQREPGPDPVYTAYADEPAEAEGVA 362

Query: 376 IALRMSLDENKK--------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
             +R  +   ++        + A++      +   +  L    +   +            
Sbjct: 363 RRIRELITPVEQGGGGVPASEVAILYRVNAQSEVYEQALADAQVPYQLRGAERFFERPEV 422

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
                LL    +  +     T    P                     +         +  
Sbjct: 423 REAGLLLRGAARAGNADPALTDADIP--SQVRAVLGTRGWTPEPPAGSGAVRDRWESLAA 480

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC-ITPLVTYKTNKNSTCG 546
           L  L     A+Q            ++E D+  A      +    +  L   K  +     
Sbjct: 481 LVRLAEQFCASQLAAGRQVTLADLVAELDERAAAQHAPTVEGVTLASLHAAKGLEWDAVF 540

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
            + +++          +  ++E R+L  +      + L+  ++     G         ++
Sbjct: 541 LVGLTEGMVPITYAKTDPQVEEERRLLYVGVTRARRHLALSWALSRSPGGRANRRPSRFL 600

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
           + +         +            G   + +      +   +                 
Sbjct: 601 NGLRPGSAAPAPRMPGGAGGIERGSGGAIAPVRKRRGPVHCRVCGRTLTDAGEMKLRRCE 660

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
              S+L+    E+     A          + ++T          + 
Sbjct: 661 DCPSELDEALYERLRDWRAEQAGQLGQPAYCVFTDKTLLAIAEAVP 706


>gi|239916963|ref|YP_002956521.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665]
 gi|281414579|ref|ZP_06246321.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665]
 gi|239838170|gb|ACS29967.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665]
          Length = 858

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 69/728 (9%), Positives = 175/728 (24%), Gaps = 101/728 (13%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     + G  +  +  I +           +             
Sbjct: 116 EILAITFTNKAAAEMRERVAGLIGPTAQRM-WISTFHSSAVRLLRNEAANI--------G 166

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++    +       R  L   +   +   P              K L + I  ++ E  +
Sbjct: 167 LKSTFTIYDSADSLR--LVTTVAKQHELDPKRFAP---------KALLNRISSLKNELVE 215

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTE--RLVELNASSPVGYQIALMRAEAEHLM 223
            +D  A    +   W    A   +  +    +   L   +      +         ++  
Sbjct: 216 ADDYAA-TVAEGDPWGRAVAAVYRDYTARLRQANALDFDDLIGMTVHMFEAFPRVLDNYR 274

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPN--------GAIVLPGLDCHIPTAIWNTIT 275
           +     +++     +  A  RL+  +A            G  +    D       +    
Sbjct: 275 R-RFRHVLVDEYQDTNHAQYRLIRLLAGPAGDPEGVETPGGELTVVGDSDQSIYAFRGAD 333

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            ++      + T           +   L+      + + + +N +  R+         P 
Sbjct: 334 IRNIVEFEQDFTD---------AVTIKLEQNYRSTQTILDAANAVIERNP-----DRRPK 379

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395
                  +         +   ++   I A             L+          A+    
Sbjct: 380 RLWTAEGEGPAIVGYAAENESAEAEWIAAT---------IDRLQDEDGIRPSDVAVFYRT 430

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +R ++  L   GI   +  G             + L  I   +D + +  ++  P  
Sbjct: 431 NAQSRALEERLVTRGIPYRVIGGTRFYDRKEIKDALAYLRVIVNPDDDVNVRRILNEPKR 490

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
             G   +    A                             A  ++  H P   +R  + 
Sbjct: 491 GIGDRAEGAVAAWAQRNRSTF-------------------SAALRDAEHAPGLAARSLKA 531

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                 +        +  L              ++ + + +     ++  L +  +  NL
Sbjct: 532 VNGFVQM--------MDDLAQVAETAGPATVLEAVLEQSGMLAALRESEDLQDESRADNL 583

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                        +        ++  A+               +   E    + ++    
Sbjct: 584 GELVAVVRSFEKTTPDGTLSDFLEQVALVADADQLPTAPDVEGEALAEAQGQVTLMTLHT 643

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           ++ L F  + L G+  GV+P   +              +   ++   +    +      R
Sbjct: 644 AKGLEFPVVFLTGMEHGVFPHARS--------------MTDEKELAEERRLAYVGLTRAR 689

Query: 696 HLIYT-----RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
             ++      RSL   +     S++L  +         +   +                 
Sbjct: 690 RRLFLTRAEARSLWGQHQFNPPSQFLGEIPEALIDWEREGTTRSAGSLSLTGAGTSRYAG 749

Query: 751 QPHYKRPK 758
           +    RP 
Sbjct: 750 RFGGGRPA 757


>gi|197250871|ref|YP_002147902.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Agona str. SL483]
 gi|197214574|gb|ACH51971.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Agona str. SL483]
          Length = 1181

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 96/891 (10%), Positives = 214/891 (24%), Gaps = 137/891 (15%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGS 238
             A   ++        R  EL     +      +R+E        ++      +I     +
Sbjct: 330  RALSEIRETVAQEKRRRGELGFDDMLSRLDTALRSESGEALAAAIRTRFPVAMIDEFQDT 389

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
             P   R+   +  H     +L   D       +      +     S  +      Y+L  
Sbjct: 390  DPQQYRIFRRIWRHQPDTALLLIGDPKQAIYAFRGADIFTYMKARSEVSAH----YTLDT 445

Query: 299  LLDFL-DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                   +     K    +++    R +  S     P    ++       +         
Sbjct: 446  NWRSAPGMVNSVNKLFSQMNDAFMFRDIPFSPVKFAPRNQSLQFKVNDAPQPAMTLWLME 505

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
              +    D +   A   A  +R  L   +   AL+T   +       +++    +   +A
Sbjct: 506  GESCGSGDYQSYMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAA 565

Query: 418  --GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                 L+     S+  S  +++F+  +   +  +++  +A         + A + + L A
Sbjct: 566  LIRDALTLLAIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTA 625

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            L     + D     ++V               ++    +      +  +         L+
Sbjct: 626  LDIETLNNDENAWDAVV----------EEFDGYRQIWHKRGVMPMLRALMSARNIAENLL 675

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                 +      L IS+  +   + L++                    L    ++ I   
Sbjct: 676  ATAGGERRLTDILHISELLQEAGSQLESE-----------------HALVRWLAQHILEP 718

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                ++    ++                    + I+   +S+ L +  + L  +      
Sbjct: 719  DSNASSQQLRLE---------------SDKHLVQIVTIHKSKGLEYPLVWLPFITHFRVQ 763

Query: 656  KNTAKNPFLSRVMQSDL-------NLKTAEKYIGQAAHDFEMANGTRHLI------YTRS 702
                 +   S     DL        L  AE+        +                  R 
Sbjct: 764  DQAFYHDRHSYEAVLDLSHAEESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRR 823

Query: 703  LRENNIPT-IASRWLQRLLVLGGTDFFDNLKK---------------------RGQCYLD 740
              +    T +    L RLL  G       L+                      R Q    
Sbjct: 824  RSDKKGETDVHQSALGRLLQKGEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAA 883

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
               +L   T Q                +         +                      
Sbjct: 884  SHAELSARTLQRLLYDSWRVTSYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPH 943

Query: 801  KDPDRTDRGTLFHNIITEL----------------IKKRINKNTPEINHLMKQIIDSHFE 844
              P     GT  H++  EL                +     +  P +   +  ++     
Sbjct: 944  HFPRGASPGTFLHSLFEELDFTQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLN 1003

Query: 845  KENLPPHI---------DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
            +  +   +            +  +   +    L+   +    +           A++ + 
Sbjct: 1004 ETGVSLSVLTEREKQVEMEFYLPIAQPLIAGELDALIRRYDPLS------AGCPALDFMQ 1057

Query: 896  IH--LTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAA 942
            +   L GF D +   + G   + DYK+                        D Q  L   
Sbjct: 1058 VRGMLKGFIDLVFRYE-GRYYLLDYKSNWLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTL 1116

Query: 943  ALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
            AL      ++      R    + Y+ L+                A  L  +
Sbjct: 1117 ALHRYLRHRMANYDYERHFGGVIYLFLRGVDSERPQQGIFTTRPAAALINQ 1167


>gi|83310516|ref|YP_420780.1| superfamily I DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82945357|dbj|BAE50221.1| Superfamily I DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 649

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 65/617 (10%), Positives = 146/617 (23%), Gaps = 78/617 (12%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TLV  + +        A + +   T RA +ELR         +          GD   E+
Sbjct: 53  TLVGRYVHLLEQGAAPARIFVSTFTARAAEELRGRIGARLETRG---------GDFDAER 103

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
           F    + +             L    L L+ R+  P   +    +      +   + ++L
Sbjct: 104 FRRMPIGT-------------LHGMALRLLQRHPPPGCPRFRVFDEQACSRVIARHRLYL 150

Query: 149 AKNLA---DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
             ++    D+    +          AL   K              A   +   L E    
Sbjct: 151 GDDVRKPTDVFGAYKDRLMSPAA--ALAEAKVRND--ATLVEAAEAYGRYQRALAEEGGF 206

Query: 206 SPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                 + L+R   E       + G    ++I       PA  R++  + +   GA +  
Sbjct: 207 DFGDLIMELVRGLEEDEAYRARIAGFFDHLLIDEYQDINPAQERMLRLLRS--EGARLWA 264

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D       W +          +         + L++              L   +   
Sbjct: 265 VGDDDQCLYAWRSADPAFILGFETAWPDPA--LFRLSRNYRSSATIVNAAGALIGANRRR 322

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-- 378
           + +  V   +                            + +   D++ +EA  +   +  
Sbjct: 323 HAKDQVPHSASRLA------------------------LTIAGLDDDEDEADYVLRVVKG 358

Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                    + A++    ++  R+++ L   GI + +             +   L   + 
Sbjct: 359 LSGRGMPWNEMAVLYRAGHVGSRIQIRLAEAGIPLVVRGAGEFWQLGPVRLTAGLARLLS 418

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
              D  A A L        G     L +         +        +  L S        
Sbjct: 419 NPQDMDARAML------GHGKRVDKLLQQAPEKIDADVPWPALCRQVGRLVSATARPPGE 472

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT--------YKTNKNSTCGNLSI 550
           +        + +     +       +  + +    L            +  +   G    
Sbjct: 473 EGLQWRDLAFTAADLAAECGTVAAFIALMEEQRRSLRRAESGGDAVVLSTIHGAKGLEWS 532

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
           +         L         +                                 +I  + 
Sbjct: 533 AVVVAGCEADLMPHESSPDLEEERRLMYVAATRAKRWLVLSFAAERRKAVAPSPYIAEML 592

Query: 611 RLIDGETVKPKIEKSST 627
             +D + ++    +S  
Sbjct: 593 SGLDEDQIRYHDPQSRA 609


>gi|145225706|ref|YP_001136384.1| exodeoxyribonuclease V, beta subunit [Mycobacterium gilvum PYR-GCK]
 gi|145218192|gb|ABP47596.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
            gilvum PYR-GCK]
          Length = 1109

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 88/873 (10%), Positives = 200/873 (22%), Gaps = 80/873 (9%)

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
             L+    + + +I+ DLY          P      A  LA              +L    
Sbjct: 144  ELVESLDDLVAEIVDDLYLAHFGQDRDEPLLTHESALRLAH-----AVVGNAHTELRPRD 198

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE------AEHLMKGTK 227
                    +   +F K        R  +L           L  A       A   M+   
Sbjct: 199  PAPGSDAAVRV-EFAKAVCAELETRKRKLGILHYDDLLSRLADALEAPDSPARARMQRRW 257

Query: 228  GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
              +++     + P   +++         A ++   D       +      +    ++   
Sbjct: 258  SIVMVDEFQDTDPVQWQVIDRAFRGH--ATLILIGDPKQAIYAFRGGDIVTYLHAAATAG 315

Query: 288  YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                   +       ++  +  ++        +  R +           +       L  
Sbjct: 316  VQRTLGTNYRSDAPLVEGLQAVMRDAQLGDPRIVVRRVDAHHREHRLQGAPHNEPFRLRV 375

Query: 348  KIPNI----QKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITADRNL 398
               +           + ++     ++ A  IA  L        +K      A+I      
Sbjct: 376  CTRDQFRVRPDRMIPIDVLRNHIPKDMAADIAALLNSGATHCGEKLAPGHIAVIVESHRD 435

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
                   L   GI    +    + ++  +     LL A  + +    +            
Sbjct: 436  GHACFAALADAGIPAVYTGDSDVFSSPAADDWMCLLEAFDQPHRSGLVRAAATTMFFGET 495

Query: 459  FPEKYL-------SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK---------NN 502
                 L         A+   +       +    + +   L        +         + 
Sbjct: 496  AEALALQGDSLTDRIAETLRQWADFARERGVAAVFEAAQLRGMGARVLRWVDGERHMTDL 555

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
             H+       +  ++     L D +          +          S +   ++    + 
Sbjct: 556  AHLTQLLHDTAHREQYSLPALRDWLRAQRDDRGGLRGTVERNRRLDSDAAAVQIMTVWVS 615

Query: 563  NVCLDEHRKLPNLWFEE---------------EGKTLSSLFSKIIETGSCIKANAIEW-I 606
                     LP  +                  +G           E+     A A +  +
Sbjct: 616  KGLQFPVVYLPFAFNRNVQPRDVVVFHEPATSDGAGDIRCLHIGGESSPDFAAVAQQARL 675

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            +     +    V     +S  +         L    + +L G   G        +P    
Sbjct: 676  EAAGDDVRLTYVAMTRAQSQVVAWWAPSRDELNGGLSRLLRGRAPGDPVVPDRCDPARID 735

Query: 667  VMQSDLNLKTAEKYIG-------QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
              ++   L+      G        A             +  R       P         L
Sbjct: 736  DAEAMARLRAWADEGGPVLEESIIAERVEVELPAPPDTLAVRHFHRRIDPLWRRTSYSGL 795

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            +     +     +       D   +L     +P         P+   P    F  +   +
Sbjct: 796  IRAAEQESGVGSEPEVVELDDEVAELRAPDTEPATPDVDMASPMAGLPMGAKFGTLVHAV 855

Query: 780  ---NDPYAVYARRILK-------LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
                DP+AV     L+       L +               L    +  L      ++  
Sbjct: 856  LETADPFAVDLAAELEAAVVEHSLWWPVDVPPAELAAALVPLHDTPLGPLAPGVTLRDIG 915

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
              + L +   +      +       I      ++  + L  ++ +     ++        
Sbjct: 916  LRDRLREMEFEFPLAGGDRRDDTPDITLADVGRLLRAHLPADDPLAPYAARL-----TTG 970

Query: 890  AIESIGIH--LTGFADRIDLLKSGFVDITDYKT 920
            A+    +   L G  D +  +  G   + DYKT
Sbjct: 971  ALAGQPLKGYLNGSLDAVLRV-DGRYLVVDYKT 1002


>gi|77407976|ref|ZP_00784726.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
 gi|77173434|gb|EAO76553.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
          Length = 1207

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/542 (10%), Positives = 150/542 (27%), Gaps = 42/542 (7%)

Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGST 236
            L   F+   S+ + +  ++ NA          ++   E      + +     +++    
Sbjct: 357 ELLQSFVLDFSEQYLQEKIQENAFEFSDIAHFAIQILEENHDIRQIYQDKYHEVMVDEYQ 416

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS- 295
            +     R++  ++   NG       D       +     +  N       Y  +P    
Sbjct: 417 DNNHTQERILELLS---NGHNRFMVGDIKQSIYRFRQADPQIFNDK--YKAYQDNPSQGK 471

Query: 296 -------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                       + LD        L +          +  +S      S  +      NK
Sbjct: 472 LIILKENFRSQSEVLDSTNSVFTHLMDEEVGDI----LYDESHQLKAGSPRQQERHPNNK 527

Query: 349 IPNIQKCFSDVALIEADNER-----EEAISIAIALRMSLDE---NKKKSALITADRNLAR 400
              +     +  + ++D+++      EA  +A  +     E     +   L+ + R    
Sbjct: 528 TQVLLLDTDEDDIDDSDSQQYDISPAEAKLVAKEIIRLHKEENVPFQDITLLVSSRTRND 587

Query: 401 RVKLELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
            +     R+GI +    G      ++   ++   L +I    +  A+  L++ P+  F  
Sbjct: 588 GILQTFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNE 647

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
            +       +       +   + +       L+   ++  K +  +  +Q+         
Sbjct: 648 DDLTRIAIHDVKMAFYHKVKLSYHKEGHHSDLITPELS-SKIDYFMKTFQTWRDFAKWHS 706

Query: 520 AVLLVDHI---LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC-LQNVCLDEHRKLPNL 575
              L+  I         +      +       +++           + +          L
Sbjct: 707 LYDLIWKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVL 766

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
             E +   +     +     + +  +  + ++     I     K  +   ++  IL   +
Sbjct: 767 ENENDLADVEVALPQ--NAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQ 824

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM-QSDLNLKTAEKYIGQAAHDFEMANGT 694
              + +   +   L E + P        L   + + +L L T  +   Q    +      
Sbjct: 825 GIGIKYVADMRHELEEEILPAVKVSMETLPYQLNKRELRLATLSE---QMRLLYVAMTRA 881

Query: 695 RH 696
             
Sbjct: 882 EK 883



 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 14/148 (9%)

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
            D    G+  H ++  +      K       L +   ++  +       I+  ++      
Sbjct: 1046 DPAALGSAVHELMQRIEMSSHVKMEDIQKALTEVNAETSIKAAIQIEKINYFFQ---ENS 1102

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHLTGFADRIDLLKSGFVDITDYK 919
               +++ E +       +    P  M            + G  D   LL    + + DYK
Sbjct: 1103 LGKYIQEEVEH------LHREAPFAMLKEDPESGEKFVVRGIIDG-YLLLENRIILFDYK 1155

Query: 920  TGDNPKKETAQKLIDPQLSLEAAALKAG 947
            T         ++    Q++L A ALK  
Sbjct: 1156 TDKFVNPLELKERYQGQMALYAEALKKS 1183


>gi|262191393|ref|ZP_06049582.1| exodeoxyribonuclease V beta chain [Vibrio cholerae CT 5369-93]
 gi|262032724|gb|EEY51273.1| exodeoxyribonuclease V beta chain [Vibrio cholerae CT 5369-93]
          Length = 1208

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 92/893 (10%), Positives = 217/893 (24%), Gaps = 117/893 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGDRIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIY 421

Query: 270  IWNTIT-------------EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
             +                   +      ++         +        I  +D+      
Sbjct: 422  AFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSFATHPFIYSDDIPFQPVA 481

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENK------IPNIQKCFSDVALIEADNEREE 370
            ++    +     +  + P  +     D+ + +          + C + +  I   +    
Sbjct: 482  ASPGADKRHWTLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   AI  R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAAIFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   + + V   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRSAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLTESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDTESATTWVDLTGNEDALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F            +  +E  I  +    L++   L   D  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF----------LLQDGQEGGIADLQQALLKQCENL--PDVV 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                 +         +LD                      +    +     +DP      
Sbjct: 872  QCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPL 931

Query: 789  RILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINH 833
              +    +   ++                      GT  H++  E+  ++  ++ P    
Sbjct: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAQSEPNTKI 991

Query: 834  LMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV 883
            ++  +     E E LP    ++                +I  +    E +    IE +  
Sbjct: 992  ILDLMESEQIESEWLPVLQHLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 884  ---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
                     + P       +G H     L GF D +   + G   + D+K+        A
Sbjct: 1052 PTLNRITQRHDPLSAQAGDLGFHAVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 930  QKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                           D Q  + A AL     S++      +    +FY+ L+ 
Sbjct: 1111 YHPQRLGSAMADHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRG 1163


>gi|124266478|ref|YP_001020482.1| DNA helicase/exodeoxyribonuclease V subunit A [Methylibium
            petroleiphilum PM1]
 gi|124259253|gb|ABM94247.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylibium
            petroleiphilum PM1]
          Length = 1086

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 86/897 (9%), Positives = 198/897 (22%), Gaps = 133/897 (14%)

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI--IETEEKKWEDLHALKN 174
                + L   +  +  +   +   +          L   ID   +         +    +
Sbjct: 274  RDAGSALEQALAGIEADPSAAFDAAWQALFTKTGELRKQIDAPGLNEAADVLRRIAEAMD 333

Query: 175  EKYGMWW-LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH--------LMKG 225
            ++             ++    + +   +   +     +       A+          +  
Sbjct: 334  QQAAHRAHARMVRLSRVLLASYRQLKRDRGLADMADLEACAEHLLADAELSGWVQERLDA 393

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAI----------VLPGLDCHIPTAIWNTIT 275
                ++I     + P   R +    +   GA           V    D       +    
Sbjct: 394  RVRHLLIDEFQDTSPLQWRTLDAWLSGYAGAGGGSSGQRPLSVFIVGDPKQSIYRFRRAD 453

Query: 276  EKSTNITSSNTTYS--------THPQYSLAKLLDFL---------DIKREDVKRLGNVSN 318
             +           +         H + +  ++L  L           + +D +      +
Sbjct: 454  PRVFAQARDFVVTALDGAHLACDHTRRNAPRVLAVLNAVFAHAQAGGRFDDFRPHTTDVS 513

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            E  G   ++     P     +       + +   +    +V        R EA  +A+ +
Sbjct: 514  EPPGAVWLLPAVPRPEKGGPVVAAGGWRDSLTTPRTEPEEVL------RRIEAEQVAVGI 567

Query: 379  RMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
               L E         ++   R     V   L   G+         L        L +LL+
Sbjct: 568  TALLAEGGLAPGDIQVLCRKRAPLALVAQALRERGVPHATPEQRELMAAPEVRDLVALLD 627

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            A+   +  ++ A  +K P+      +          E +A               L    
Sbjct: 628  ALASPSHDLSFAQALKSPVFGASDDDLVALARAARAERLAWSEVL----------LRGAG 677

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                  +     W   L+         L+D I+     +           G L       
Sbjct: 678  AGRAALDRARALWPGWLAAAAALPPHDLLDRIVD-EGEVRERYAAVVPPAGRLLALAAID 736

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
              +     +    H    N       + +        +    +  +  + ++     +  
Sbjct: 737  ALLAQSLLLDGARHATPYNFVRALRRRRVLLPPQSAADAVQLLTIHGAKGLEARAVFVID 796

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
               +    +++TL I                            A        +++ +  +
Sbjct: 797  TMPEAPKAETATLLI-------------DWPADAAHPHCCAFVASESRCPPSLRALMAAE 843

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
               +   +    +      R  +   +   +      S W QRL   G      +    G
Sbjct: 844  QEGRAREELNALYVAMTRARERLVFSATTPHRAAPGPSAW-QRLAEAGADAVPPSADAGG 902

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                  + +           R    P                                  
Sbjct: 903  TAGSAGSAESPVVLLALPRVRLAAEPSDPVA----------------------------- 933

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                  D +    G   H ++  L                        E    P      
Sbjct: 934  ---ADADTEAAQLGRAVHRVLEWLPADAALDAAAAAA---------AIEFALPPDAA--- 978

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-KMAIESIGIHLTGFADRIDLL---KSG 911
                   +  + L          +   ++    ++AI   G  L    DR+  L      
Sbjct: 979  --PRVAALVRAVLGS-AACARFFDPEALHWSGNEVAIAWRGAAL--RIDRLVALHTPAGP 1033

Query: 912  FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
               + DYK    P+   A +        E  A    +   +   +     +I    +
Sbjct: 1034 EWWVLDYKLQHAPQAIEAYR--------EQLAGYREAVQSLQGGESVRAAFITAAGE 1082


>gi|238062529|ref|ZP_04607238.1| hypothetical protein MCAG_03495 [Micromonospora sp. ATCC 39149]
 gi|237884340|gb|EEP73168.1| hypothetical protein MCAG_03495 [Micromonospora sp. ATCC 39149]
          Length = 273

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 49/175 (28%), Gaps = 16/175 (9%)

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
           +  +    + S++    + P       + +           +    G   HN +      
Sbjct: 1   MPERLFVCTPSKLGAYADCPRRYRYSYVDRPAPPKGPPWAHN--SLGASVHNALKNWYAL 58

Query: 823 RINKNTPEINHLMKQ--IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
             ++  PE    + +   +   F  +          R  + +       + + +    + 
Sbjct: 59  PADRRRPEALAGLLRGTWVRDGFRDD-------EQERDAYRRALAWLESYVDALDPQADP 111

Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSG---FVDITDYKTGDNPKKETAQKL 932
           + V     +    +     G ADRID         + I DYKTG         + 
Sbjct: 112 VGVERVVAVKTAVLAF--NGRADRIDSRPGPSGPELVIVDYKTGRAGLDADDARG 164


>gi|254776976|ref|ZP_05218492.1| exodeoxyribonuclease V, beta subunit [Mycobacterium avium subsp.
            avium ATCC 25291]
          Length = 1100

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 91/963 (9%), Positives = 199/963 (20%), Gaps = 137/963 (14%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174
            L+      + +I+ DLY          P      A  LA      +        L  L  
Sbjct: 145  LLDSLDELVAEIVDDLYLAHFGQDHDDPVLHYREALRLAR-----DVVNNPSAQLRPLHP 199

Query: 175  EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA------EHLMKGTKG 228
            E       ++  F          R   L           L  A A         M     
Sbjct: 200  EPGSR-AAVSLRFANDVLAELDTRKRRLGVLGYDDLLTRLADALATEHSPARLRMHQRWP 258

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT-------EKSTNI 281
             +++     + P   +++    +  +  I++   D       +            ++   
Sbjct: 259  IVMVDEFQDTDPVQWQVIDRAFSGRSTLILI--GDPKQAIYAFRGGDIVTYLRAAETAGQ 316

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
              +  T        L +L   L   +     +       + R   +S +           
Sbjct: 317  KKTLDTNWRSDSALLQRLQVVLRGAQLGDPAIVVNDVAAHHRGHRLSGAPRNDPFRLRVV 376

Query: 342  TDILENKIPNIQKCFSDVALIEADNERE--EAISIAIALRMSLDENKKKSALITADRNLA 399
            +     +         ++      +      A+  A A            A+I      A
Sbjct: 377  SRNTLGRRGIANLPIDELRQHIGADLAADIRALLAAGATFDGKPVRAGDIAVIVERHRDA 436

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
            +     L   G+    +    + T+  +     LL A  + +    +             
Sbjct: 437  QACFTALCDAGVPAVYTGNSDVFTSQAAEDWLCLLEAFDQPHRPGVV------------- 483

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                  RA  A           +     L   +   +     +       +         
Sbjct: 484  ------RAAAATMFFGETAETLAAGGDALTDRIAQTLREWAGHARERGVAAIFEAAQLLG 537

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW-TKLTVTCLQNVCLDEHRKLPNLWFE 578
                V         +                           L+    +           
Sbjct: 538  MGNRVLGWQGGARHMTDLAHLTQLLGEVAHREHHNLPALRDWLRRQRDERSGAPERNRRL 597

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            +       + +  +  G       + +            +    + +  L + G      
Sbjct: 598  DSDAAAVQIMTVFVSKGLQYPIVYLPFAFHRNTTDSDVVLFHDEDGTRCLHVGGKDS--- 654

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEMANGTRH 696
             +F T+   G  E     +      L+R              +  G  +           
Sbjct: 655  PDFKTVERLGRKEDASDDSRLTYVALTRAQAQVVAWWSPAYHEPNGGLSRLLRGRRPGEP 714

Query: 697  LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-----------LDWTRKL 745
            ++  R          A   L+     GG    + +                    + R +
Sbjct: 715  VVPDRCEPAKISDEDALARLREWEAAGGPVIEEAVPAPAPPLPGVPVPARLENRHFHRGI 774

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
            D   ++  Y                  + +   + D     A  +  +         P  
Sbjct: 775  DTGWRRTSYSGLIRQAQPSGVGSEPEAAGLDDEVGDILLAPATSVGDVA--SPMADLPAG 832

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH---FEKENLPPHIDIIWRHLFHK 862
               GTL H ++        +   P++   +   I  H   +     P  +      +   
Sbjct: 833  ATFGTLVHAVLQT-----ADPFAPDLAAELTARIREHSVWWPVAATPEDMAAAMVPMHDT 887

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH------------------------- 897
                        +  +      +  ++ +                               
Sbjct: 888  PLGPLAGGLTLRRIGLSDRLCELDFELPLAGGDRRSAPPEVRLADLAPLLRAHLPADDVL 947

Query: 898  --------------------LTGFADRIDLLKSG---FVDITDYKTGD------NPKKET 928
                                LTG  D +  +  G      + DYKT              
Sbjct: 948  ACYADRLTDRSLGAESLRGYLTGSIDAVLRIPDGAGHRYLVVDYKTNRLGDAQHPLTAAD 1007

Query: 929  AQKL----------IDPQLSLEAAALKAGSFSQIDCRKV----ANLFYIRLKQKFKIDCI 974
              +              Q  L +A L      ++           + Y+ ++     D  
Sbjct: 1008 YDRPRMVEAMLHSDYPLQALLYSAVLHRFLRWRLAGYDPDRHLGGILYLFVRGMCGPDTP 1067

Query: 975  TND 977
              D
Sbjct: 1068 VRD 1070


>gi|126668207|ref|ZP_01739168.1| exodeoxyribonuclease V gamma chain [Marinobacter sp. ELB17]
 gi|126627356|gb|EAZ97992.1| exodeoxyribonuclease V gamma chain [Marinobacter sp. ELB17]
          Length = 1224

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 88/852 (10%), Positives = 183/852 (21%), Gaps = 118/852 (13%)

Query: 11  IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI--- 67
           I P   F       L +      F         L S T  V +    Q L+    E    
Sbjct: 15  ITPG--FHAIHANHLEDLRRAVVFICQQNPLPPLQSETFLVQSNGIAQWLKLALAEKRSE 72

Query: 68  --TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125
             +     I   +  L            +L     P  S   +   + RL  +    +  
Sbjct: 73  NGSEGGLGIAAGMDFLFPARFIWQAYRAVLPDGDVPEQSPFDKRRLVWRLYRLLPELVLT 132

Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE---------- 175
                     L    +   A  LA+ +AD+ D  +     W        +          
Sbjct: 133 DEAFNPLARFLDGSDTDLRAFQLAEKVADLFDQYQVFRADWLAAWEQGRDVVISTRNGEK 192

Query: 176 --KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
             +    W        +               +    Q   +   A          I++ 
Sbjct: 193 PIEQDTRWQPMLWRKLVEDTGAEAHTSRSQIHTRFMKQGQQVA--APSHPSRLPKRIVVF 250

Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW---------NTITEKSTNITSS 284
           G +         +  ++      + +          I                   ++  
Sbjct: 251 GVSSLPRQALEALYVLSRFSQVVLCVHNPSQFYWADIVSDRELLKAERKRGASHPTLSQI 310

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL------------ 332
           +     H Q++   L  +    R+ ++ L    N    R+   +                
Sbjct: 311 DDADQLH-QHANPLLAAWGKQGRDYIRLLDEFDNPDEYRNSFQTPDQKIDIFSEHGAGQT 369

Query: 333 --------------------PPDTSDMRNTDILENKIPNIQKCFSDVAL----------- 361
                                 +   +  +                ++            
Sbjct: 370 TCLLHQLQNDIYNLTPLQEIRDEQRKLDLSQGHPLTAEGSLSAEGSLSAEGSLPAEGSLS 429

Query: 362 ----------IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                     +   N       + I     L        L   D  +             
Sbjct: 430 SEGFPKADGSVAFHNAHSPQREVEILHDQLLAAFNADDTLRPRDIMVMVPDINVYAPHIQ 489

Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
            +            H     S           +A+ TL+  P  +FG  E         +
Sbjct: 490 AVF--GRYTAGRKRHIPFTISDQGQRNHEPVLIALETLMSLPRHRFGVSEIISLLEVPGI 547

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK--ELAVLLVDHILQ 529
                   +              R      +       + L        L  +L+ + + 
Sbjct: 548 RDRFEIAEEEIPLARRWVEGANIRWGLHGAHRESLELPADLDRNTWQSGLRSMLLGYGMG 607

Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
              P    +          S++      V  L+ V  D         +E     +   F 
Sbjct: 608 DDEPWAGVQPYGEIGGLQASLAGRLGDFVYRLEKVWQDLQASRTPQEWEALFAAMLEQFF 667

Query: 590 KIIETGSCIKAN--AIEWIDIITRLIDGETVKPKIE---------------------KSS 626
             +E    +  N    +    +   +        +                       + 
Sbjct: 668 HKVEGHDLLLLNRFRRQLEQWLDDTLAAGLEHQLLPLNIVKDVLLDGLDEGGLNQRFLAG 727

Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            +     +  R + F T+ L G+N+G +P++     F           ++  +       
Sbjct: 728 KVNFATLMPMRAIPFRTVCLLGMNDGDYPRSRPPVDFDLMAQDYRPGDRSRREDDRYL-F 786

Query: 687 DFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
              M +    L  +   R   ++ P   S  + +L       +    +  GQ  +  T  
Sbjct: 787 LEAMLSAREQLYISWVGRSIRDDSPRPPSVLVGQLQDHLNGLW----QLPGQPDVAVTDA 842

Query: 745 LDYTTKQPHYKR 756
           L        + R
Sbjct: 843 LTTCHPLQPFSR 854


>gi|213852805|ref|ZP_03382337.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 250

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 63/251 (25%), Gaps = 16/251 (6%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
           +++ AL+   +      DP  P       I V +    Q L+    +  G  + I     
Sbjct: 11  DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
            L      +    +L         S      +L  L+      L D  + +     L+  
Sbjct: 63  PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198
                   L+   AD+ D        W          +           L  A   +T  
Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           L +             ++               + I G +   P   + +  +  H    
Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLKALQALGKHIEIH 237

Query: 257 IVLPGLDCHIP 267
           ++      +  
Sbjct: 238 LLFTNPCRYYW 248


>gi|127513058|ref|YP_001094255.1| exodeoxyribonuclease V, beta subunit [Shewanella loihica PV-4]
 gi|126638353|gb|ABO23996.1| exodeoxyribonuclease V, beta subunit [Shewanella loihica PV-4]
          Length = 1223

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 100/885 (11%), Positives = 215/885 (24%), Gaps = 114/885 (12%)

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAE---------AEHLMKGTKGPIIIAGSTGSIPA 241
                +  +    N  +P    IAL  A              +       +I     + P 
Sbjct: 333  IKARFAAQKQLKNLRTPDDLLIALADALSEETDQEQALARAIAKRFPIALIDEFQDTDPL 392

Query: 242  TARLMSTVANHPNGAI-----VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ--- 293
              ++ S++      +      +L   D       +            +      H     
Sbjct: 393  QYQIFSSIYQGQQVSTDSDLGLLMIGDPKQAIYAFRGADIH--TYIHARGQTENHYSLDT 450

Query: 294  -YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
             Y  ++ +     +         +S  +    +  S         +              
Sbjct: 451  NYRSSQAMIEAVNQLFSRSDDPFISQAIPFELVKASPEAAEKRLVEKVPQTSALRLKLLG 510

Query: 353  QKCFSDVALIEADNEREE--AISIAIALRMSLDENK---------KKSALITADRNLARR 401
            +   + +    A ++  E  A  IA  L  +              K  A++  DRN A  
Sbjct: 511  EDPNAGLNKASARSQLAEDAANEIARLLNEAQRGECLKQDKPLKAKDIAVLVRDRNEAAY 570

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            +K  L+  GI     +   +  TL +  L  +L AI    D  A+ + +   L  +    
Sbjct: 571  IKTALSSRGIGAVFLSRDSVFDTLVAKELALVLLAIANPKDERALRSAMATALLGYDAQA 630

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
             +                       +L   V  +     +N H    +  +      LA 
Sbjct: 631  IH---------------------GFNLDEDVRQQQLEAFDNLHQTWLKRGIMPCMMALAA 669

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                   + I  L+T    +        + +  +     L  +    +     L      
Sbjct: 670  D-----TRLIERLLTADEGQRRLTDFRHLGELLQQKAMELDGISALLNWYQQTLIEVSST 724

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            +               +  +  + ++     +   ++     +      +   E   L +
Sbjct: 725  EEAQLRLESEQNLVQIVTIHKSKGLEYPICFLPFVSLARDSRRKPA--PMLYHEQDALVW 782

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR--HLIY 699
            D             +N A++  L  V  +   L         +         ++      
Sbjct: 783  DIDQSEEGWAKYKAENLAEDLRLLYVALTRPVLACYCYVANHSRFTKRDGISSQLFETAI 842

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP-- 757
               L         +        L       +L +     LD+   +D         RP  
Sbjct: 843  GYLLGIETNACEFADIQAAAQALASEAISVDLVESDAPKLDF-DPIDTADAVKLAPRPLN 901

Query: 758  --KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                 P               + I+      A   L+       +      +RG    + 
Sbjct: 902  RRHEIPWRVGSYSGLVKHSAHEQISPGMGDEAFPELEQLAPDSEQLSRFSFERGANAGSF 961

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
            +  ++++                    F  ++    +   W      + H+ L+ +    
Sbjct: 962  LHWVLEQIDFTLADTSLGDELPKAMERFGIDSEWQDMLHAWY---LDLLHTPLDGDGLRL 1018

Query: 876  SSIEKI--FVNIPAKMAIESIGIH-----------------------LTGFADRIDLLKS 910
            +S+ +    V +   M I  +                          L GF D     + 
Sbjct: 1019 ASLSQAQKLVEMEFYMPIGKLDAPGLNQLLSQYGYSAALNFETLEGMLKGFIDLTFEYQ- 1077

Query: 911  GFVDITDYKTG----------DNPKKETAQ-KLIDPQLSLEAAALKAGSFSQIDC----R 955
            G   I DYK+                        D Q  + + AL      ++      +
Sbjct: 1078 GKFYIADYKSNHLGDHLSHYEKPAMLRAIAGHHYDLQYIIYSLALHRYLKLRLPGYQYDQ 1137

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
             V   +Y+ L+        T          L     + L  +++ 
Sbjct: 1138 HVGGCYYLFLRGMSADSPSTGVYYDKPPLALI----QALDTLLSE 1178


>gi|284928732|ref|YP_003421254.1| Rep family ATP-dependent DNA helicase [cyanobacterium UCYN-A]
 gi|284809191|gb|ADB94896.1| ATP-dependent DNA helicase, Rep family [cyanobacterium UCYN-A]
          Length = 772

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/334 (9%), Positives = 81/334 (24%), Gaps = 44/334 (13%)

Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
           + +   I   +      E       E            +      +  +L E NA     
Sbjct: 177 RAIRYAISSAKNLGLSPE-------EYLKEHSYSKGRVIAEIYDEYQTQLAENNALDFDD 229

Query: 210 YQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG--------- 255
             +  +    ++             I++     +      L+  +  +            
Sbjct: 230 LILIPVCLFQDNKSVLGYWHSQFKHILVDEYQDTNRIQYTLIQLLTTNGKINKNSWNWKN 289

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +    D       +            +                    +  +D      
Sbjct: 290 RSIFVVGDADQSIYSFRMADFTILLNFQAEFGD---------------GLPDDD----TK 330

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
              ++           +  +    +N+  ++  +   +     +   +AD+E  EA  + 
Sbjct: 331 TMIKLENNYRSTENILVAANNLIYKNSQRIDKTLKATRGKGEKIYCYKADDEHIEAEFVI 390

Query: 376 IALRMSL----DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
             ++  +    + + K  A +    + +R  +  L R  I   I  G             
Sbjct: 391 SKIQELISINSELSWKDIAFLYRVNSQSRPFEDILVRKSIPYTIVGGFKFYDRQEIKDSV 450

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
           + L  I    D +++  ++  P    G     L 
Sbjct: 451 AYLRLIVNPYDTVSLLRVINSPRRGIGKTTIDLL 484


>gi|302542688|ref|ZP_07295030.1| putative ATP-dependent DNA helicase (UvrD/REP) [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460306|gb|EFL23399.1| putative ATP-dependent DNA helicase (UvrD/REP) [Streptomyces
           himastatinicus ATCC 53653]
          Length = 244

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 45/187 (24%), Gaps = 16/187 (8%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
           P +     ++ A      V     +  +P     + +   ++RA  ELR          +
Sbjct: 63  PGTGKTTTLVEA------VARRVREGADPE---RILVLTFSRRAAVELRDRMTVRLEGAT 113

Query: 73  TILPIIKSLGDVVEEKFTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
              P   +          A  D+ L  +    +S  ++ + +  L+              
Sbjct: 114 G--PRATTFHSFCYALVRAHQDVDLFADPLRLLSGPEQDVVVRELLAGQAELER---AGR 168

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                     +       A  +  ++            L           W  AA FL  
Sbjct: 169 ASARWPDELRACLTTRGFADEVRAVLARSRELGLGPRSLGEFAARTGRPDWGAAAAFLAE 228

Query: 191 ASKYWTE 197
                  
Sbjct: 229 YLDVLDA 235


>gi|212704689|ref|ZP_03312817.1| hypothetical protein DESPIG_02752 [Desulfovibrio piger ATCC 29098]
 gi|212671923|gb|EEB32406.1| hypothetical protein DESPIG_02752 [Desulfovibrio piger ATCC 29098]
          Length = 713

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/515 (8%), Positives = 129/515 (25%), Gaps = 56/515 (10%)

Query: 33  NFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTAD 92
                 + P  +    +   T++A QE+      ++   +  L    +            
Sbjct: 43  WLADHGVPPESM---LLLTFTRKAAQEMLQRAAALSDH-ALSLVQGGTFHSFAFGVLRRY 98

Query: 93  LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL 152
                          R   +            DI   +              +    + +
Sbjct: 99  RPDWLE--------DRPFTVMD--------SADINAAVKACKDDLRLGKGDRSFPRTQAI 142

Query: 153 ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
              +     +E + +++   +      +       L  A   + +    L+    +    
Sbjct: 143 VGFLSKARNKEMRLDEVLQREAFHLLPYAEPLMQ-LGEAYDAYRKEKGLLDYDDLLFELE 201

Query: 213 ALMRAEAEHLMKGTKG--PIIIAGSTGSIPATARLMSTVANHPNGAI----VLPGLDCHI 266
            L+R          +    I++     +    AR++  +A      +    V+   D   
Sbjct: 202 HLLRTNERAAENLRRRYTHILVDEYQDTNLVQARIVRLLAGPEGEGMPPGNVMAVGDEAQ 261

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               +     ++                     +  L+      K + +V+N +      
Sbjct: 262 SIYAFRGANVRNILDFPKLFPG---------ARIIRLEENYRSTKPILDVANNLLE---- 308

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-DEN 385
                          T+    K+   ++  + V L+   ++  +A  +   +   L    
Sbjct: 309 -------------NATESFRKKLFTRKEGGAPVRLVTPLSDMSQAKLVVRRIEDLLTRHL 355

Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
             + A++      +  +++ L + GI      G+  +   H   + +    +    D  A
Sbjct: 356 PHEIAVLFRAGFHSYHLEMALNQAGIAFRKYGGLRYTEAAHVKDVMAYARLLLNPLDMPA 415

Query: 446 IATL--VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            + +  +   +      + Y          +     +      DL+ +   R       T
Sbjct: 416 FSRVAELHEGIGPKTVLKLYNVAQSADGPALDKACARFPSFREDLRFIAEMRARPLHPVT 475

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
            +           +           Q +  ++   
Sbjct: 476 ALELIVDHYRPVLESRYPEDWPRRQQGLEEILQMA 510


>gi|118465710|ref|YP_883674.1| exodeoxyribonuclease V, beta subunit [Mycobacterium avium 104]
 gi|118166997|gb|ABK67894.1| exodeoxyribonuclease V, beta subunit [Mycobacterium avium 104]
          Length = 1100

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 95/962 (9%), Positives = 209/962 (21%), Gaps = 135/962 (14%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174
            L+      + +I+ DLY          P      A  LA      +        L  L  
Sbjct: 145  LLDSLDELVAEIVDDLYLAHFGQDHDDPVLHYREALRLAR-----DVVNNPSAQLRPLHP 199

Query: 175  EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA------EHLMKGTKG 228
            E       ++  F          R   L           L  A A         M     
Sbjct: 200  EPGSR-AAVSLRFANDVLAELDTRKRRLGVLGYDDLLTRLADALATEHSPARLRMHQRWP 258

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT-------EKSTNI 281
             +++     + P   +++    +  +  I++   D       +            ++   
Sbjct: 259  IVMVDEFQDTDPVQWQVIDRAFSGRSTLILI--GDPKQAIYAFRGGDIVTYLRAAETAGQ 316

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
              +  T        L +L   L   +     +       + R   +S +           
Sbjct: 317  KKTLDTNWRSDSALLQRLQVVLRGAQLGDPAIVVNDVAAHHRGHRLSGAPRNDPFRLRVV 376

Query: 342  TDILENKIPNIQKCFSDVALIEADNERE--EAISIAIALRMSLDENKKKSALITADRNLA 399
            +     +         ++      +      A+  A A            A+I      A
Sbjct: 377  SRNTLGRRGIANLPIDELRQHIGADLAADIRALLAAGATFDGKPVRAGDIAVIVERHRDA 436

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
            +     L   G+    +    + T+  +     LL A  + +    +          FG 
Sbjct: 437  QACFTALCDAGVPAVYTGNSDVFTSQAAEDWLCLLEAFDQPHRPGVVRAAAAT--MFFGE 494

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
              + L+   +AL     +  +        + +     A Q           +        
Sbjct: 495  TAETLAAGGDALTDRIAQTLREWAGHARERGVAAIFEAAQLLGMGNRVLGWQGGARHMTD 554

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
               L   +             + + C + ++                   R        +
Sbjct: 555  LAHLTQLLG------------EVAHCEHHNLPALRDWLRRQRDERSGAPERNRR----LD 598

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                   + +  +  G       + +            +    + +  L + G       
Sbjct: 599  SDAAAVQIMTVFVSKGLQYPIVYLPFAFHRNTTDSDVVLFHDEDGTRCLHVGGKDS---P 655

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEMANGTRHL 697
            +F T+   G  E     +      L+R              +  G  +           +
Sbjct: 656  DFKTVERLGRKEDASDDSRLTYVALTRAQAQVVAWWSPAYHEPNGGLSRLLRGRRPGEPV 715

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-----------LDWTRKLD 746
            +  R          A   L+     GG    + +                    + R +D
Sbjct: 716  VPDRCEPAKISDEDALARLREWEAAGGPVIEEAVPAPAPPLPGVPVPARLENRHFHRGID 775

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
               ++  Y                  + +   + D     A  +  +         P   
Sbjct: 776  TGWRRTSYSGLIRQAQPSGVGSEPEAAGLDDEVGDILLAPATSVGDVA--SPMADLPAGA 833

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH---FEKENLPPHIDIIWRHLFHKI 863
              GTL H ++        +   P++   +   I  H   +     P  +      +    
Sbjct: 834  TFGTLVHAVLQT-----ADPFAPDLAAELTARIREHSVWWPVAATPEDMAAAMVPMHDTP 888

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH-------------------------- 897
                       +  +      +  ++ +                                
Sbjct: 889  LGPLAGGLTLRRIGLSDRLCELDFELPLAGGDRRSAPPEVRLADLAPLLRAHLPADDVLA 948

Query: 898  -------------------LTGFADRIDLLKSG---FVDITDYKTGD------NPKKETA 929
                               LTG  D +  +  G      + DYKT               
Sbjct: 949  CYADRLTDRSLGAESLRGYLTGSIDAVLRIPDGAGHRYLVVDYKTNRLGDAQHPLTAADY 1008

Query: 930  QKL----------IDPQLSLEAAALKAGSFSQIDCRKV----ANLFYIRLKQKFKIDCIT 975
             +              Q  L +A L      ++           + Y+ ++     D   
Sbjct: 1009 DRPRMVEAMLHSDYPLQALLYSAVLHRFLRWRLAGYDPDRHLGGILYLFVRGMCGPDTPV 1068

Query: 976  ND 977
             D
Sbjct: 1069 RD 1070


>gi|224541822|ref|ZP_03682361.1| hypothetical protein CATMIT_00994 [Catenibacterium mitsuokai DSM
            15897]
 gi|224525245|gb|EEF94350.1| hypothetical protein CATMIT_00994 [Catenibacterium mitsuokai DSM
            15897]
          Length = 1181

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
             TDRGTL HN+++         +  E+   +    +  F++E L    + +         
Sbjct: 1027 ATDRGTLVHNLLSYF--NFKEDDPEELIQSL--YTNQMFDEEGLSVLKNYLPH------I 1076

Query: 865  HSFLEHEE-KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
            + F+  +  ++    ++I+     +   +  G+ + G  D + + K   V + DYKT   
Sbjct: 1077 NDFINSDTYQLIKDADQIYQEKQFRYK-DENGLIINGIFDLVFI-KDNKVYVLDYKTDRV 1134

Query: 924  PKKETAQKLIDP---QLSLEAAALKAGSFSQIDC----RKVANLFYI 963
             K  + + L +    QLS  +  LK    + +        +    Y+
Sbjct: 1135 SKDNSEEVLKELHRTQLSYYSKVLKEVFHTDVQPIVYYLHINKAIYL 1181


>gi|242240423|ref|YP_002988604.1| exonuclease V subunit beta [Dickeya dadantii Ech703]
 gi|242132480|gb|ACS86782.1| exodeoxyribonuclease V, beta subunit [Dickeya dadantii Ech703]
          Length = 1189

 Score = 58.8 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 82/854 (9%), Positives = 195/854 (22%), Gaps = 91/854 (10%)

Query: 196  TERLVELNASSPVGYQIALMRAEA----EHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +R  EL     +      ++ +A       ++      +I     +     R+ ST+  
Sbjct: 345  KQRRAELGFDDLLSRLDEALQQDAGQALAQAIRERYPLAMIDEFQDTDAQQYRIFSTIYA 404

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL---------LDF 302
                   L   D       +      +      +         +             L  
Sbjct: 405  DQPQCGWLMIGDPKQAIYAFRGADIFTYMRAREDVPSHYTLDTNWRSTPGMVEAVNRLFQ 464

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ-------KC 355
                     ++  +       +  ++  +       MR        +           +C
Sbjct: 465  CADTPFVFSQIPFLPVNAADNNRSLTFEYQGSRMPAMRFWLTGREGVGVGDYQQAMARQC 524

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-ID 414
               +    +  +R EA      +R  +        ++   R  A  ++  L R  I  + 
Sbjct: 525  ADSICSWLSAGQRGEAWLTRGEMRRPV--VASDITVLVRSRYEAALIRQALGRLNIPSVY 582

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
            +S    +     ++ L  LL A+        +   +   L               +    
Sbjct: 583  LSNRDSVFAASEATELLWLLQAVLAPEQERLLRGAMATSLMGMDAAALDELCRNESQWDA 642

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
             +        I   + ++       + +    +  +    E           +   +   
Sbjct: 643  LVDEFAGYRHIWGQRGVLPMLRRLMQQHRLAENLLASPEGE---------RRLTDVLHIG 693

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
               +    +     ++  W        Q +     +        E  + L  + +     
Sbjct: 694  ELLQEASAALDSEHALVRWL------AQQIAQPNSQSESQQLRLESDRHLVQIVTIHKSK 747

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
            G       + +I              +     TL + G  ESR L  +  +   L     
Sbjct: 748  GLEYALVWLPFICNFRAQ-PQGIYHDRQTLLPTLDLNGGEESRTLAEEERLAEDLRLLYV 806

Query: 655  PKNTAKNPFL----SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
                +            ++S      ++ +     +  +        +   +L       
Sbjct: 807  ALTRSIYHCAVGVAPLYLRSQKKEGNSDMHSSALGYLLQRGAAAPADVLVAALEAMAG-- 864

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
                       +   D      +  +  L+    L     +                +  
Sbjct: 865  ---------DDIDIADVVAEDGEPWRPALETAPLLQVRQNKRQLHDRWRVTSYSGLQQHG 915

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
            + +  +                 D        P     GT  H++  +L           
Sbjct: 916  ASAIQELFPRLDLETKGEEAQAPDEAFTPHTFPRGAAPGTFLHSLFEQLEFTAAIDEPWL 975

Query: 831  INHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI------ 878
            +  L +Q +   ++         +              +   F + E +    I      
Sbjct: 976  LEQLRQQGMAEEWQPVVKAWLATVLDTPLTPEHIRLSALESRFRQSELQFYLPIASMLDA 1035

Query: 879  ----EKIFVNIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYK---------- 919
                     + P      ++        L GF D +   + G   + DYK          
Sbjct: 1036 GKLDRLAKTHDPLSADCPALDFQQVKGMLKGFIDLVFFWQ-GRYYLLDYKSNWLGPDAGA 1094

Query: 920  -TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCI 974
             T     +  A+   D Q  L + AL      ++      R    + Y+ L+        
Sbjct: 1095 YTQPAMHRAMAEHRYDLQYQLYSLALHRYLRHRVPGYDYQRHFGGVIYLFLRGISAAYPG 1154

Query: 975  TNDKKKYSADELSE 988
                    A  L +
Sbjct: 1155 HGVFFTKPAQLLVD 1168


>gi|217968983|ref|YP_002354217.1| UvrD/REP helicase [Thauera sp. MZ1T]
 gi|217506310|gb|ACK53321.1| UvrD/REP helicase [Thauera sp. MZ1T]
          Length = 745

 Score = 58.8 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 87/740 (11%), Positives = 182/740 (24%), Gaps = 85/740 (11%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAI----QELRSEFIEITGKKSTILPI----IK 79
           GTL              A + +   ++RA     + +R    +    +  +         
Sbjct: 68  GTLAHRVARLAAAGADPARILLLTFSRRAADEMGRRVRRILAQAAADRPGLARAELQWAG 127

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
           +   +       D      L+P  S   R    A L+ + R++L             +  
Sbjct: 128 TFHAIGARLLR-DHAGRIGLDPGFSIHDREDS-ADLMNLVRHELGLSATKQRFPQKGTCL 185

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
              +  +     LA+++        +WED                   LK   + + E  
Sbjct: 186 AIYSAVVNTRAALAEVLQASFPWCAQWED------------------ELKRLFRAYVEAK 227

Query: 200 VELNASSPVGYQIALM----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                       +        AE    + G    +++     +    A ++  +A  P+G
Sbjct: 228 QAQQVLDYDDLLLYWAQMVGEAELGAEIGGLFDHVLVDEYQDTNALQAAIL--LAMKPDG 285

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +    D       +   T ++     +       P   +  L       +  +     
Sbjct: 286 RGLTVVGDDAQSIYAFRGATVRNILDFPAAFE----PPARVVTLERNYRSTQPILDAANA 341

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
           V      R      S                              L+   +E  +A  + 
Sbjct: 342 VIALAAERFAKNLWSERASAQRP---------------------RLVTVKDEAAQADFVV 380

Query: 376 IALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            ++    +E    K+ A++      + R++LELTR  I      G+      H   + +L
Sbjct: 381 DSVLARREEGLKLKQQAVLFRASAHSARLELELTRRNIPFVKYGGLRFLEAAHVKDVLAL 440

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
           L       D +A    ++               A   L+ V                   
Sbjct: 441 LRWAENPRDRIAGFRAIQ------LLAGIGPRTAGRVLDNVCSAPPGCVL---------- 484

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                       P W    +  D+                     T      G    +  
Sbjct: 485 -LAEQPVPEAARPGWLEFATLVDRLSGREEASTAAFAPGGAPARTTAPVRAEGLAGGARG 543

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                T  +  C     ++P L+ + + + L       I   S  +   +  + +     
Sbjct: 544 GLPWPTDFELACRWYEAQMPRLYDDFQVRVLDIQQLARIAATSPSRQRFLTELTLDPPSA 603

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL- 672
                   +     L +     ++   ++ + +  + +G  P + A         +  L 
Sbjct: 604 TSAEAGMPLLDEDYLILSTIHSAKGQEWNAVSVLNVVDGCIPSDVATRDSAEIEEERRLL 663

Query: 673 -----NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
                  K A   I           G        + R   IP       +++        
Sbjct: 664 YVAMTRAKDALDLIVPQRFHVTQQTGLGDRHV-YAGRSRFIPNRLLGHFEQMSWPLPAPE 722

Query: 728 FDNLKKRGQCYLDWTRKLDY 747
                   Q  +D   K+  
Sbjct: 723 LQGSPASRQAAIDLAAKMRD 742


>gi|117920689|ref|YP_869881.1| exodeoxyribonuclease V subunit beta [Shewanella sp. ANA-3]
 gi|117613021|gb|ABK48475.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. ANA-3]
          Length = 1263

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 90/889 (10%), Positives = 218/889 (24%), Gaps = 119/889 (13%)

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI------IIAGSTGSIPATAR 244
             S+ + ++  + N  +P      L  A   +     K         +I     + P    
Sbjct: 337  ISERFAKQKQQKNVLTPDDLLTTLAAAMQANPDTLPKAVASRFPVALIDEFQDTDPLQFA 396

Query: 245  LMSTVANHPNGAI-----------------VLPGLDCHIPTAIWNTIT--EKSTNITSSN 285
            + S +     G                   +L   D       +              + 
Sbjct: 397  IFSGIYQTRLGLDTQNSAAEPKPRTDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQTQ 456

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
              Y     Y  ++ L    +     +      ++      V + +         +  +  
Sbjct: 457  AHYFLDTNYRSSRNLVA-GVNHLFAQHSDPFISQSIPFDPVKTPASAAAKQLVEQAPNSA 515

Query: 346  ENKIPNIQKCFSDVALIEADNEREE--AISIAIALRMSLDENKK---------KSALITA 394
              ++  + +  + +    A     E  A  I   L  + +   +           A++  
Sbjct: 516  ALRLKLLSEGETGLNKASARQTLAEDTAAEITRLLTQAANGQCRTPKGPLIAKDIAILVR 575

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
            DRN A  +K  L++  I     +   +  T+ +  +  +L A+    D  A+ + +   L
Sbjct: 576  DRNEAAVMKTALSKRQIGAVFLSRDSVFETVEAREMALILRALASPKDERALRSALATAL 635

Query: 455  AKFGFPEKYLS-----RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
              +   + +       + +  LE             +    L L                
Sbjct: 636  LGYRAEQIHAFNQDEEQRQRLLEQFFELHQIWQKRGIMPALLSLANATQMVARLLHSPAS 695

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
            +   + +++ A  L          L  ++          +  D     +   +   +D  
Sbjct: 696  TSTDQAEQDAAAQL--EASNGERRLTDFRHLAELLQQKATEIDGISALLNWYEQQLIDNT 753

Query: 570  RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK-----PKIEK 624
                     E  + L  + +     G       + ++ +        T            
Sbjct: 754  GTDEQQLRLESEQNLVQIVTIHKSKGLEYPVCFVPFVSLARDNRRRPTPMLYHRTNADGA 813

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF-----LSRVMQSDLNLKTAEK 679
               ++ L   +          L      ++   T           +        LK+   
Sbjct: 814  QELVWDLEGTDEGWEQAKQETLAEDLRLLYVALTRPVYLCYLYIANHSRMLKTGLKSQLH 873

Query: 680  YIGQAAH--------DFEMANGTRHLIYTRSLRENNIPTIASRW----LQRLLVLGGTDF 727
                           DF         +           +I          +L   G    
Sbjct: 874  ETAIGYLLGITDTDCDFSRLQNAAKALVAGLESSQPAISIEVVADDIEANKLQTGGANTH 933

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP----Y 783
              + +K  + Y    R   Y+    +    K  P  + +      ++      DP    +
Sbjct: 934  TLSARKVSRQYRTPWRVGSYSGLVKNAPHAKATPGADDEVNAVLGTDTTNSAIDPIWPDH 993

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
                   L+   + +        + G+  H ++  +   +   + P     + + +  + 
Sbjct: 994  WWQEAADLQAQPLLNRFSFERGANAGSFMHLVLELIDFTQAQIDLP---RELPKAMLQYG 1050

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI-------EKIFVNIPA--------- 887
                  P ++  +  +         +  + I   +       +   V +           
Sbjct: 1051 IAPEWQPVLEDWYLEVLQAPLALMAQDNQLINPELCLAALAPQHTLVEMEFYLPLNRLKD 1110

Query: 888  --------------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL- 932
                          ++  + +   L GF D     + G   I DYK+        A    
Sbjct: 1111 TELNQLLGQYGYDTELQFDELQGMLKGFIDLTFEYQ-GKFYIADYKSNHLGDNIQAYHHS 1169

Query: 933  ----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                       D Q  L + AL      ++        +   +Y+ L+ 
Sbjct: 1170 ALKQAIGDHRYDLQYILYSLALHRYLAMRLPNYDYDTHIGGCYYLFLRG 1218


>gi|86159971|ref|YP_466756.1| hypothetical protein Adeh_3553 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776482|gb|ABC83319.1| hypothetical protein Adeh_3553 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 279

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 77/277 (27%), Gaps = 37/277 (13%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S S+I+  +  P +   R +L +         P     GT FH  +            P
Sbjct: 13   ISVSQIRTYLRCPRSYLLRYVLGVAP----AFKPVPFAFGTSFHAALARFYVAVKEDGAP 68

Query: 830  EINHLMKQIIDSH----------FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
                L+ +                + E+  P           ++   F +   K    ++
Sbjct: 69   PPLQLVTEAFRDAWQRELDADVRLQAEDDEPADTGALVDKGAEMLAVFHDQAVKSLDGVK 128

Query: 880  KIFVNIPAKMAI--ESIGI----HLTGFADRIDLLKSGFVD-ITDYKTGDNPKKETAQKL 932
               V  P  + +     G+     L G  D +  LK G    + ++KT    +    Q  
Sbjct: 129  VEAVEQPFTIPLFDPDTGLEMEEKLVGALDLV--LKKGRRRQVIEHKT-AAQRYGEDQIR 185

Query: 933  IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
             D Q +    A +A    ++           ++  K K   +       + ++       
Sbjct: 186  WDIQPTGYKLAARAMGLGEVKVT-------YQIVTKAKCPVLQIVDLDRNEED-----ED 233

Query: 993  NLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
                +   +  G          S  +     Y H  R
Sbjct: 234  EFQRVAVNVMRGVDGGAFPPARS-WACRSCPYSHACR 269


>gi|121610604|ref|YP_998411.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121555244|gb|ABM59393.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
          Length = 621

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 74/675 (10%), Positives = 160/675 (23%), Gaps = 120/675 (17%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
           V     T+ A  ELR   I I GK++    ++ +   +              L+      
Sbjct: 55  VAAVTFTRDAALELRERIILIAGKQALPSLLVGTFHSIA-------------LSMAFPGK 101

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
           QR    + ++    ++L    + +   S        A A+  A  L   ID         
Sbjct: 102 QRTPMGSNILRKGFSRLQRPWEIVREGSRRGF---VARALKHA-ELEMTIDEAT------ 151

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG- 225
             +  +K+ +        A+     ++ + E L            +   RA AE ++   
Sbjct: 152 AVVEGIKSGQKEPDSHRHAE----LARMYQEILRRHGVIDLQDIVLHTNRAIAEGVISPL 207

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
               ++I     +  A          H   + +    D       +            ++
Sbjct: 208 PCDCLLIDEYQDTDLAQYEWSML---HRQASTLTAVGDDDQSIYGFR---RALGYKGMTD 261

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                + Q  +  L        E +     +      R      +        +      
Sbjct: 262 FARQLNAQAIV--LGMNYRCHAEVLAPAARLIACNMQRMAKALLAHKGAGGVALWERY-- 317

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405
                               + + EA       R SL   +    L   ++ L       
Sbjct: 318 -------------------ASRQREAQVCCERARKSLAAGRSMGVLARTNKRLDDMEVQC 358

Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
           L           G  L +   +  L +L   +        +           G  E    
Sbjct: 359 LKHRVPYTRSEGGSVLKSHEMAVFLAALSALLGMDARDGDVLLA----WCGVGEDELKAL 414

Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
            A +                 DL            + +          +   E    L+ 
Sbjct: 415 HAAHGA---------------DLLQPKSKAALAGVDLSPNARKAYAQVQRRFEEWGQLLA 459

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
                             T    S++    +     + V       + +   +   +   
Sbjct: 460 AGAVAYVLDKLLGLLIEHTDDKRSVAALEIVCEVFSKPVGGAGDDGVVDGTVQMRARVQR 519

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
           +                          +  +  K K  + + + +L    ++ L +D + 
Sbjct: 520 TKD------------------------MSAQPDKDKKPEGNPVVLLTAHGAKGLEWDEVW 555

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLR 704
           L G  EG +P   +                       +    +      R  LI + + +
Sbjct: 556 LLGAEEGRFPDEASS-------------------IQEERRLFYVAMTRARTTLIISAAGK 596

Query: 705 ENNIPTIASRWLQRL 719
               P +    ++R+
Sbjct: 597 AAISPFVHEAGVERI 611


>gi|240169399|ref|ZP_04748058.1| exonuclease V beta subunit recB [Mycobacterium kansasii ATCC 12478]
          Length = 1089

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 97/995 (9%), Positives = 214/995 (21%), Gaps = 169/995 (16%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEIT-GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
            L  + +    + A +ELR    +      + +   + +  D+V     ++   +     
Sbjct: 45  TLDEMLLITFNRAASRELRERVRDQIVAAVAALDGRMPTDTDLVRHLLGSEAERAV---- 100

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
                 RL  L   +  +         +       SL ++  +       L + +D +  
Sbjct: 101 ------RLARLRDALANFDAATIATTHEFCGSVLRSLGVAGDSDSGFT--LRESLDDLVA 152

Query: 162 EEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
           E      L    N        +         +    + +R                   +
Sbjct: 153 EIVDDRYLARFANTDTDPALTYAQALDLARNVVGDPYAQRRPLDPDPDSAAGVRLDFAEQ 212

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTV------ANHPNGAIVLPGLDCHIPTAIWN 272
               ++  K  + I G    +   ++ ++               IVL           W 
Sbjct: 213 VLDELERRKRRLRILGYDDLLLRLSKALAAADSPARDRMRRRWRIVLVDEFQDTDPIQWQ 272

Query: 273 TITEKSTN-ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
            +        T           Y                      +     R+     +F
Sbjct: 273 VLERAFRGVSTLIMIGDPKQAIYGFRG--------------GDIYTYLKAARTADARYTF 318

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSAL 391
                SD    + L+  +        ++ + +      EA      L+ +      +  +
Sbjct: 319 GVNWRSDRVLVESLQTVLRGAALGHPEIVVHD-----IEAHHGGHRLQGAPRGAPFRLRV 373

Query: 392 ITADRNLARRVKL---ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
           +                + R  I  D++          +S+L+S      +      IA 
Sbjct: 374 VRRPTVGYDGTANVPIGVLREHIPADLAGD-------IASLLSSGARFAERPVAAGDIAV 426

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
           +V+H                 A       G+ + +     K  +    A           
Sbjct: 427 IVEH----HRDARACRDALARAGIPAVYTGDTDVFASRAAKDWLCLLEAFDAPQRSGLVR 482

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
            +  +    E    L          +               ++   +        +    
Sbjct: 483 AAACTMFFGETVETLAAEGDALTDRVAATLREWTDQARLRGVAAVFEAA-----QLAGMG 537

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV-----KPKIE 623
            R L     E     L+ L   + ET    +       D + R  D  T      +    
Sbjct: 538 RRVLGQRGGERHMTDLAHLAQLLHETAHRQRYGLPALRDWLRRQCDDTTRAAEQNRRLDS 597

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNE----------GVWPKNTAKNPFLSRVMQSDLN 673
            ++ + I+    ++ L F  + +  L                 +T          +S   
Sbjct: 598 DAAAVQIMTVFVAKGLQFPIVYVPFLFNRNVRREDIMLYHDDTDTRCLYLGGDNSRSVEE 657

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
           L  AE         +      +  +        +        L R    G     D    
Sbjct: 658 LNRAEAARDNIRLTYVALTRAQSQVVAWWAPTIDEVNGGLSRLLRGRGSGDPLVPDKCAP 717

Query: 734 RGQCYLDWT----------RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
           R +    W             ++ +T                  R +            Y
Sbjct: 718 RIRDDDAWAVFTRWQEAGGPSVEESTIVSPAAIETASSADGFAVRHFHRQIDTTWRRTSY 777

Query: 784 AVYARRIL------------------------------KLDFIPHFKKDPDRTDRGTLFH 813
           +   R                                   D        P     G+L H
Sbjct: 778 SALVRAADAIVTSGVTSEPEVDVRDDEVDAVVVSEPGSGADLDSPLAAMPSGAAFGSLVH 837

Query: 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI---SHSFLEH 870
            ++        +    ++   +++ +  H     +      +   L              
Sbjct: 838 AVLET-----ADPQAADLAGELEEQVRRHAPWWPVDTDAAELATALVPMHDSPLGLLAGD 892

Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIH--------------------------------- 897
               Q  +      +  ++ +    +                                  
Sbjct: 893 LTLRQIGVRDRLRELDFEIPLAGGDLRARAPRVSLSDVGELLRVHLPRSDPFWSYADRLT 952

Query: 898 ------------LTGFADRIDLLKSGFVDITDYKT 920
                       L+G  D +  L      + DYKT
Sbjct: 953 SPGLGGQSLRGYLSGSIDVVLRLPQQRYLVVDYKT 987


>gi|260061427|ref|YP_003194507.1| ATP-dependent helicase [Robiginitalea biformata HTCC2501]
 gi|88785559|gb|EAR16728.1| ATP-dependent helicase [Robiginitalea biformata HTCC2501]
          Length = 1039

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 53/467 (11%), Positives = 123/467 (26%), Gaps = 50/467 (10%)

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            +L  +    +  H     S L+         + +H+      LV   +            
Sbjct: 596  LLRLLQDPSDPNHAYGVLSFLAPAGAGTHAWIRNHLGDTGELLVQEWSFDPGVMRLKPAY 655

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            D  +  +   +                     L +L    ++       +   +++    
Sbjct: 656  DILEEAIRNFRLGGA-------------ADAYLFALLEHALDASRNGDVSPGTFLEYWDS 702

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL--SRVMQ 669
              D  ++         L ++    ++ L F  +I    +  ++     K           
Sbjct: 703  KKDKLSIAAPENP-DALRLMTIHSAKGLEFPVVIFPFADSQIYGGKNPKLWLPVDPESFC 761

Query: 670  SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
                L+ + +   +       A              N +    +R +  L VL G     
Sbjct: 762  GFSYLQISSRKEVEHYGAAAAACYREEREKLELDAFNVLYVAHTRAIHALFVLTGKAPDG 821

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYK------RPKPFPPLEAQPRTYSFSEIKQLINDPY 783
              ++  +    +   L  T K            P P P     P   S   +     D  
Sbjct: 822  ETREPARYTDLYASYLRATGKWEDATCTYTFGSPAPAPGHREFPVR-SPLPLGYSSRDAG 880

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
                 R++                 G   H  ++ +      +   ++  ++ +++    
Sbjct: 881  R---LRVVTRSGRLWDSAQEAAAAYGNTLHLALSLI------RTAADLPGVIPRLVGEGL 931

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
                    +    +    ++    + H  ++    E+    I  +  I      +    D
Sbjct: 932  --------LPAEEKESLARLLEQVV-HHPELAPYFEE-GAEIYNERDIILRN-KVILRPD 980

Query: 904  RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
            R+ +++ G   I DYKT             D QL   A+A++     
Sbjct: 981  RL-VIQEGRAVIIDYKTARPAPG-----HRD-QLRGYASAIEEMGLK 1020


>gi|330827920|ref|YP_004390872.1| exodeoxyribonuclease V subunit beta [Aeromonas veronii B565]
 gi|328803056|gb|AEB48255.1| Exodeoxyribonuclease V, beta subunit [Aeromonas veronii B565]
          Length = 1199

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 89/827 (10%), Positives = 200/827 (24%), Gaps = 126/827 (15%)

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             ++ T    +I     + P   R+   +        +L   D       +      +   
Sbjct: 376  RIRATYRVAMIDEFQDTDPQQYRIFHRLYGGHTDTALLMIGDPKQAIYGFRGADIFTYIQ 435

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS--MVISKSFLPPDTSDM 339
               N +               L         L    N ++ R+    I ++ +P    + 
Sbjct: 436  ARRNVSAH-----------YTLGRNWRSSSALVGAVNGLFERAKDPFIYEADIPFLPVEA 484

Query: 340  RNTDILENKIPNIQKCFSDVALIEADN----------EREEAISIAIALRMSLDENKK-- 387
            +                    L                R  A+ I   L ++ +   K  
Sbjct: 485  QGKSKALLLDGATAPVLHCWQLSGQPTFNKGDYQSKLARATAVEIHRLLTLAREGKAKIG 544

Query: 388  -------KSALITADRNLARRVKLELTR-FGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                     A++       + V+ EL R    ++ +S    +     +  +  +L+A   
Sbjct: 545  DQAVKAGDIAVLVRTGAEGKLVQQELARLAIASVYLSNRESVLEQTEAREILLILHACQN 604

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
             ++  ++   +   L            +       A++       I   + ++    A  
Sbjct: 605  PSEERSLRAALATGLFDLDAKALDGLASDERAWESAVQEFMEYRKIWHRRGVLAMLRALL 664

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                      +    E           +   +      +   +   G  ++  W      
Sbjct: 665  HRRNLASSLLASPYGE---------RRLTNFLHLGELLQQVSSELDGEYALLRWLG---- 711

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
              + V     +    +   E  + L  + +     G       + +I            +
Sbjct: 712  --EAVSRPNGQDAEQVLRLESERKLVQIVTIHKSKGLEYPLVFLPFICSHRTAETPLYHE 769

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                 + T+  L   E  L   D   L      ++   T             L L     
Sbjct: 770  ADEAGNRTILDLTGAEGSLAEADRERLAEDLRLLYVALTRGVYATW------LGLAPVRA 823

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
              G++       + T      +   E +  T+A+   +    L G    +    R     
Sbjct: 824  GAGKSEKT--DLHHTAIGYLLQKGEEGDAQTLATALTELAQALPGVAVGEPSLTRPAPLP 881

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ---LINDPYAVYARRILKLDFI 796
                +L     +      +    + +     +         L N  + V       +   
Sbjct: 882  PEEEQLGEPQVRHFSGSLERDWWISSYSGLAAQGHGHSKGVLANPGFDVEVVAEAAVVHE 941

Query: 797  PHFKKD-----PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
                +      P     GTL H++   +  +                +  H         
Sbjct: 942  EDELQPSIFTFPKGARPGTLLHSLFETIDFQSAGGEP----------LAEHVATLLAQDG 991

Query: 852  IDIIWRHLFHKISHSFLEH-------EEKIQSSIEKIFVNIPAKMAIESIGIH------- 897
             D  W  +  +   + L+        E      +      +  +  +    +        
Sbjct: 992  FDESWAPVLQQQVEAVLDTPLDTGFGEPVRLRDLAPERKQVELEFFLPMGRVTAPALTAL 1051

Query: 898  ----------------------LTGFADRIDLLKSGFVDITDYKT---GDNPK------- 925
                                  L GF D +   + G   + DYK+   G +P        
Sbjct: 1052 CQQHDPLSRGNKPLSFATVQGMLKGFIDLVFEWQ-GRWYLLDYKSNHLGMSPADYSRPAL 1110

Query: 926  -KETAQKLIDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQ 967
             +  A+   D Q  L + AL      ++      +    +FY+ L+ 
Sbjct: 1111 ERAMAEHRYDLQYQLYSLALHRLLTLRLPGYDFEQHFGGVFYLFLRG 1157


>gi|307544596|ref|YP_003897075.1| UvrD/REP helicase [Halomonas elongata DSM 2581]
 gi|307216620|emb|CBV41890.1| UvrD/REP helicase [Halomonas elongata DSM 2581]
          Length = 732

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 77/723 (10%), Positives = 178/723 (24%), Gaps = 115/723 (15%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
               + + +  + A ++ ++            LP +++   +      +           
Sbjct: 45  DPTRLLVLMFNRSAREDFQTRLTA-MAPAGQRLPDVRTFHSLGHRLSQSLTRWGVLAP-- 101

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                R L  A   L    +   +             +       LA     +   +   
Sbjct: 102 -----RQLLTADWQLERLLRQASLNALEGAPEARETALDADKLEALAHFCGLVKAEMAE- 155

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG---YQIALMRAEA 219
               E    L        ++ A        +     L E    +        +  + A+A
Sbjct: 156 --PAELYARLDFGDGTEHFVGA-------FEQAETLLAEHGLMTYADLIYRPLRALEADA 206

Query: 220 EHLMKGTK--GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
               +       +II        A  RL++ +A     A V+   D +     W      
Sbjct: 207 GLRDRVQGFLDHVIIDEYQDINVAQQRLLAVLAG--RQAAVMAVGDANQCIYEWRGAHPD 264

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
           +     + T  + H  Y L+                 + +     +  + +        +
Sbjct: 265 TMLENFTATFGAAH-DYPLSTTFRHGHALALVANHAIDANRRRPDQICLAAPDNPATQLA 323

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397
             + +  L +++   Q+   +++               + +R        + AL+ A   
Sbjct: 324 VNQGSQALLDELAAWQRQGRNLS------------EACLLVRSWALSVPLQLALLRAGIP 371

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
                     R          +PL   L   ++ +   ++ +  D   + TL+  P    
Sbjct: 372 F---------RLAREDRFVFRLPLVEALAGYLMLARDASLLQ--DPGHLLTLLSQPTPFV 420

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                    A+                   L                +   Q R  +   
Sbjct: 421 PRERLSALAAR-------------------LAETQRWPERHDPLLEGIKPHQRRTLKRRW 461

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            L   L          L+ +   +      L  +                          
Sbjct: 462 ALLCELPKRSSWSPARLLGHVIEEVEAEKVLKRAAA-----------------------R 498

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            ++G+    L   +IE    +  +   + D++         +P   +   + I     ++
Sbjct: 499 RDKGEEDVRLLDVLIEQAGEVS-DLAAFTDLLR--------RPVENRDDGVLINTVHGAK 549

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L +  ++L G NE  +P  T  NP             T ++   +    +      R  
Sbjct: 550 GLEWPLVMLAGTNEEDFPHYTRDNPL------------TPQRLEEERRLFYVAITRARER 597

Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
           +    +  +      SR+L       G      L    +       + D   +      P
Sbjct: 598 LV---MLHDGGEHRPSRFLGETAWQDGQRVAQRLAGSQETTPVAVARPDLVRRYLSALSP 654

Query: 758 KPF 760
           +  
Sbjct: 655 ETP 657


>gi|113970112|ref|YP_733905.1| exodeoxyribonuclease V subunit beta [Shewanella sp. MR-4]
 gi|113884796|gb|ABI38848.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. MR-4]
          Length = 1274

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 93/891 (10%), Positives = 218/891 (24%), Gaps = 118/891 (13%)

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI------IIAGSTGSIPATAR 244
             S+ + ++  + N  +P      L  A   +     K         +I     + P    
Sbjct: 337  ISERFAKQKQQKNVLTPDDLLTTLAAAMQANPDTLPKAVASRFPVALIDEFQDTDPLQFA 396

Query: 245  LMSTVANHPNG------------------AIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
            + S +     G                    +L   D       +      +       T
Sbjct: 397  IFSGIYQTRLGVDTQDPAAAEPKPRTDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQT 456

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVS--NEMYGRSMVISKSFLPPDTSDMRNTDI 344
                +   +  +    L +    +    +    ++      V + +            + 
Sbjct: 457  EAH-YFLDTNYRSSRNLVVGVNHLFAQHSDPFISQSIPFDPVKTPASAAAKQLVEHAPNS 515

Query: 345  LENKIPNIQKCFSDVALIEADNEREE--AISIAIALRMSLDENK---------KKSALIT 393
               ++  + +  + +    A     E  A  I   L  + +            K  A++ 
Sbjct: 516  AALRLKLLSEGDTGLNKASARQTLAEDTAAEITRLLTQAANGQCSTPKGPLIAKDIAILV 575

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
             DRN A  +K  L++  I     +   +  T+ +  +  +L A+    D  A+ + +   
Sbjct: 576  RDRNEAAVMKTALSKRQIGAVFLSRDSVFETVEAREMALILRALASPKDERALRSALATA 635

Query: 454  LAKFGFPEKYLS-----RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            L  +   + +       + +  LE             +    L L               
Sbjct: 636  LLGYRAEQIHAFNQDEEQRQRLLEHFFELHQIWQKRGIMPALLSLANATQMVARLLHSPI 695

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                 + +++ A  L          L  ++          +  D     +   +   +D 
Sbjct: 696  LPSTDQAEQDAAAQL--EASNGERRLTDFRHLAELLQQKATEIDGISALLNWYEQQLIDN 753

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK-----PKIE 623
                      E  + L  + +     G       + ++ +        T           
Sbjct: 754  TGTDEQQLRLESEQNLVQIVTIHKSKGLEYPVCFVPFVSLARDNRRRPTPMLYHRTNADG 813

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF-----LSRVMQSDLNLKTAE 678
                ++ L   +          L      ++   T           +        LK+  
Sbjct: 814  AQELVWDLEGTDEGWEQAKQETLAEDLRLLYVALTRPVYLCYLYIANHSRMLKAGLKSQL 873

Query: 679  KYIGQAAH--------DFEMANGTRHLIYTRSLRENNIPTIASR----WLQRLLVLGGTD 726
                            DF         +           +I          +L   G   
Sbjct: 874  HETAIGYLLGITDTDCDFSRLQNAAKALVAGLESSPPAISIEVVADNIDANKLHTGGSDS 933

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP-YAV 785
               + +K  + Y    R   Y+    +    K  P  + +      ++      DP +A 
Sbjct: 934  QTLSARKVSRQYRTPWRVGSYSGLVKNAPHAKATPGADDEVNAVLGTDTTNSAADPLWAA 993

Query: 786  YARRILKLDFIPHFKKDP-------DRTDRGTLFHNIITEL-IKKRINKNTPEINHLMKQ 837
               +   L  +    +            + G+  H ++  +   +       E+   M Q
Sbjct: 994  PLWQEALLQEVEPQAQPLLNRFSFERGANAGSFMHLVLELIDFTQAPIDLPRELPKAMLQ 1053

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISH--SFLEHEEKIQSSI-EKIFVNIPA------- 887
               +   +  L      + +     ++     +  E  + +   +   V +         
Sbjct: 1054 YGIAPVWQPILEDWYLEVLQAPLALMAQDNQLINPELCLAALAPQHTLVEMEFYLPLNRL 1113

Query: 888  ----------------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
                            ++  E +   L GF D     + G   I DYK+        A  
Sbjct: 1114 KDTELNQLLGQFGYDTELQFEELQGMLKGFIDLTFEYQ-GKFYIADYKSNHLGDNIQAYH 1172

Query: 932  L-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                         D Q  L + +L      ++        +   +Y+ L+ 
Sbjct: 1173 HSALKQAISDHRYDLQYILYSLSLHRYLAMRLPNYDYDTHIGGCYYLFLRG 1223


>gi|262166384|ref|ZP_06034121.1| exodeoxyribonuclease V beta chain [Vibrio mimicus VM223]
 gi|262026100|gb|EEY44768.1| exodeoxyribonuclease V beta chain [Vibrio mimicus VM223]
          Length = 1208

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 95/869 (10%), Positives = 210/869 (24%), Gaps = 115/869 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGDRIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDHPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R  ++     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWMLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTASSSGA 541

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSI 429
            A      +  +        A++    N AR V+  L++ GI  + +S    +  +  +  
Sbjct: 542  ASFYRGEVIEAG-----DLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQD 596

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
            +  LL A+++  D   +   V   L      E              +   +    +   +
Sbjct: 597  IERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSER 656

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
             ++    A          W +    E           +   +      +        +  
Sbjct: 657  GVLPMLRAVLTQRHIAERWLAESEGE---------RWLTDYLHISELLQQATREIDSDQG 707

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
            +  +    +            ++  L  E     +       I     ++   +    ++
Sbjct: 708  LLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVM 762

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRV 667
            +     E      E ++T   L   E  L   D   L      ++   T      F+   
Sbjct: 763  SYRESSEGKYYDAESATTWVDLTGNEDALAKADQERLAEDLRLLYVALTRAVYGCFIGIA 822

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
               + N         ++A  F            +  +E  I  +    L++   L   D 
Sbjct: 823  PLRNGNSSQEPTSAHRSAMGF----------LLQDGQEGGIADLQQALLKQCENL--PDV 870

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                            +LD                      +    +     +DP     
Sbjct: 871  AQCAPPERFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQDIP 930

Query: 788  RRILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEIN 832
               +    +   ++                      GT  H++  E+  ++  ++ P   
Sbjct: 931  LLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAQSEPNTK 990

Query: 833  HLMKQIIDSHFEKENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIF 882
             +++ +     E E LP    ++                +I  +    E +    IE + 
Sbjct: 991  IILELMESEQIEAEWLPVLQHLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLD 1050

Query: 883  V---------NIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKT---GDNPK 925
                      + P       +G H     L GF D +   + G   + D+K+   GD+P 
Sbjct: 1051 APTLNRITQRHDPLSAHAGDLGFHPVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPA 1109

Query: 926  K--------ETAQKLIDPQLSLEAAALKA 946
                       A+   D Q  + A AL  
Sbjct: 1110 AYHPQRLGSAMAEHRYDLQYQIYALALHR 1138


>gi|311063849|ref|YP_003970574.1| DNA helicase [Bifidobacterium bifidum PRL2010]
 gi|310866168|gb|ADP35537.1| DNA helicase [Bifidobacterium bifidum PRL2010]
          Length = 1427

 Score = 58.4 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 892  ESIGIHLTGFADRID--LLKSGFVDI--TDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            + + + L+G  DR++  ++  G   +   DYKTG  P  +      D QL      L   
Sbjct: 1214 DRLTVRLSGRIDRMETRIMPDGKRHVRLIDYKTGKVPSTKAIFN--DLQLVCYQLGL--- 1268

Query: 948  SFSQIDCRKVANL 960
            +F +   R    L
Sbjct: 1269 AFPENGPRGAEAL 1281


>gi|215447499|ref|ZP_03434251.1| putative ATP-dependent DNA helicase [Mycobacterium tuberculosis
           T85]
 gi|289759338|ref|ZP_06518716.1| hypothetical protein TBEG_02335 [Mycobacterium tuberculosis T85]
 gi|289714902|gb|EFD78914.1| hypothetical protein TBEG_02335 [Mycobacterium tuberculosis T85]
          Length = 240

 Score = 58.4 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 51/191 (26%), Gaps = 25/191 (13%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-- 70
           P +     ++ A +             +P     V +   + R     RS       +  
Sbjct: 27  PGTGKSTLLVEAAVAHIG------AGTDPES---VLLLTGSGRMGMRARSALTTALLRSR 77

Query: 71  ------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
                  +   P+++++              + +  P      RLL  A    I R  L 
Sbjct: 78  TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALP------RLLTSAEQDAIIRELLA 131

Query: 125 DIIKDLYP--ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
              +D      +  +           A  L +++           +L  L   +    W+
Sbjct: 132 GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWI 191

Query: 183 LAADFLKIASK 193
            A  F +   +
Sbjct: 192 AAGQFAQRYEQ 202


>gi|153825966|ref|ZP_01978633.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-2]
 gi|149740283|gb|EDM54424.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-2]
          Length = 1208

 Score = 58.4 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 88/882 (9%), Positives = 209/882 (23%), Gaps = 95/882 (10%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRTLYPMAMIDEFQDTDPLQYSIFSRLYLDHPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S+    R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASSGADKRHWTLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAAAFHRGEAIEAGDLAVLVRTGNEARMVRDALSHQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   V   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W      E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLVESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E     +E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDVESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGVAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F +    +        +           +++       +  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF-LLQDGQEGGIADLQQALFKQCENLPDVEQCPPPKRFEQA 882

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                +  +  L          ++             +  R     E+  L    + + + 
Sbjct: 883  YQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPLLEVGGFDLDSA 942

Query: 789  RILKLDFIPHFKKD----PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
            +      +   ++     P     GT  H++  E+  ++   + P    ++  +     E
Sbjct: 943  QERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILDLMESEQIE 1002

Query: 845  KENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV---------NI 885
             E LP    ++                +I  +    E +    IE +           + 
Sbjct: 1003 SEWLPVLQQLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDAPTLNRITQRHD 1062

Query: 886  PAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL-------- 932
            P       +G H     L GF D +   + G   + D+K+        A           
Sbjct: 1063 PLSAHAGDLGFHAVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAAYHPQRLGSAMA 1121

Query: 933  ---IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                D Q  + A AL     S++      +    +FY+ L+ 
Sbjct: 1122 DHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRG 1163


>gi|33863357|ref|NP_894917.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
 gi|33640806|emb|CAE21261.1| similar to UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
          Length = 1274

 Score = 58.4 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 76/857 (8%), Positives = 192/857 (22%), Gaps = 96/857 (11%)

Query: 216  RAEAEHLMKGTKGP--IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
              +A  L    +     +I     + P   RL+     H    ++L   D       +  
Sbjct: 408  DQQAPWLEALRQRYRVALIDEFQDTDPVQWRLLEGAFAHSPDHLLLMVGDPKQAIYRFRG 467

Query: 274  ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
                +     S          +       LD     +      S          S +   
Sbjct: 468  GDLNTYLHARSKVDRIDALLDNFRTTTPLLDGLNHLMAPGLRRSKLNVPSLTACSGATPR 527

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA-ISIAIALRMSL-----DENKK 387
            P    M    +L               L    N  E+   ++A A+   L     + +  
Sbjct: 528  PLPLGMHPLQLLNLDEDTHPTGAQPAPLTSKTNLEEQIPTAVAHAVLDLLQSDSYNFSPS 587

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
               ++      A  ++  L    +   + +   + T+  + +L   L+ + + +   ++ 
Sbjct: 588  DICILVGRHRQAASIRQGLAVAAVPTRLVSQGDVLTSEAAQVLQRFLDCLARPSHSSSLK 647

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             +    L ++   +   +     L+ +ALR    + ++  L  L+       +  T    
Sbjct: 648  LVACSALMQWKTEQLAHAECNGELDQLALRFRNWAINLPRLG-LMGCLAELLEGRTMADL 706

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
             +      D      LV  ++       +   +         +    ++           
Sbjct: 707  SERGRLLGDLYQCAQLVQEVIHRQGLDASTAADWLRRQRLQPVDPVPEVRQPHSDVAESA 766

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID-------GETVKP 620
                  +     E   +   +     +             +    +          + + 
Sbjct: 767  VAVVTVHRSKGMEYPVVICPYLWQAPSLPHGPLWRSNSESLWCVALSTGWGKGWQLSQQA 826

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
                      L  +         +++            +   F    + + +   T E+ 
Sbjct: 827  YQASLQEAERLAYVAITRACSLLMLIWARGAKQEGNPLSAWLFGVDAIDAAMKDLTPERM 886

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                  D +        +    L+              L +        +L      Y  
Sbjct: 887  SAW--LDRQQL---PITVVPAQLKSMQQRWKPPPLQGELTLGPTPQRRLDLSWGRSSYSA 941

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE-IKQLINDPYAVYARRILKLDFIPHF 799
            W                +     ++  +       ++       A  +   L        
Sbjct: 942  WVSATHTYDGSAPADPLELEEGRDSDQQKLEPMLKLQDQSAIADASRSTPTLNWSDQSPL 1001

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
             + P     G   H I+  L   +  ++   +      +I+    +  L   +    +  
Sbjct: 1002 GQFPRGAAAGDCLHRILERLDFCKPLQDPNAVI-----VIEEELRRAGLDITLLASVQDG 1056

Query: 860  FHKISHS----FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT---------------- 899
              ++  +     L      Q   ++    +   + I   G  L                 
Sbjct: 1057 LDRVLSTPIGGSLGGLRLNQLHGQRRIHELSFDLPIAHQGKVLRSFDLASVFHLNPLARF 1116

Query: 900  --------------------GFADRIDLLKSG----FVDITDYKTG----DNPKKETAQK 931
                                G  D +             + D+K+      +P+ +    
Sbjct: 1117 GLPYAEMITGLNVCSRGFLTGSIDLVFTDSEESLEARWWVADWKSNWIGRRDPEGQAVAC 1176

Query: 932  -----------------LIDPQLSLEAAALKAGSFSQIDCRKV----ANLFYIRLKQKFK 970
                                 Q  L   AL      ++   +         Y+ L+    
Sbjct: 1177 GPLHYDDSAMEQQMLLHHYPLQAHLYLVALHRFLRWRLPSYEPQRHLGGYVYVFLRGLPG 1236

Query: 971  IDCITNDKKKYSADELS 987
               +           L 
Sbjct: 1237 AKAMNGRSLTKPVPGLI 1253


>gi|170765721|ref|ZP_02900532.1| exodeoxyribonuclease V, beta subunit [Escherichia albertii TW07627]
 gi|170124867|gb|EDS93798.1| exodeoxyribonuclease V, beta subunit [Escherichia albertii TW07627]
          Length = 1180

 Score = 58.4 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 111/975 (11%), Positives = 234/975 (24%), Gaps = 151/975 (15%)

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD-IIDIIETEEKKWEDLHALKN 174
            I  W  +  +  +   P    S            +     + + ++    +   +  L  
Sbjct: 269  ISAWAEEETNSYQLPEPLEKFSQRFLEDRTKAGGETPRHPLFEAVDQLLAEPLSIRDLVI 328

Query: 175  EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKGPI 230
                     A   ++        R  EL     +    + +R+E        ++      
Sbjct: 329  T-------RALAEIRETVASEKRRRGELGFDDMLSRLDSALRSESGEALASAIRARFPVA 381

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            +I     + P   R+   + +H     +L   D       +      +     S      
Sbjct: 382  MIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARS----EV 437

Query: 291  HPQYSLAKLLDFL-DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
            H  Y+L         +     K      +    R +             +      E + 
Sbjct: 438  HAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALHFVFKGETQP 497

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
                           D +   A   A  +R  L   ++  AL+                 
Sbjct: 498  AMKMWLMEGENCGVDDYQSTMAQVCAAQIRDWLQAGQRGEALLM---------------- 541

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
                +  A  P+  +  S ++ S   A           TL+  P       +      + 
Sbjct: 542  ----NGDAARPVRASDISVLVRSRQEAAQVR----DALTLLDIPSVYLSNRDSVFETLEA 593

Query: 470  ALELVALRGNKNSYDIMDLKSLVL---DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
               L  L+          L+S +      +      T      +  +  ++      +  
Sbjct: 594  QEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDAVVEEFDGYRQIWR 653

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
                +  L T  + +N     L+ +   +     L    L +             + LS 
Sbjct: 654  KRGVMPMLRTLMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQ 713

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
               +     S  +        +                   + I+   +S+ L +  + L
Sbjct: 714  HILEPDSNASSQQMRLESDKHL-------------------VQIVTIHKSKGLEYPLVWL 754

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDL-------NLKTAEKYIGQAAHDFEMANGTRHLI- 698
              +           +   S     DL       +L  AE+        +     +     
Sbjct: 755  PFITNFRIQDQAFYHDRHSFEAVLDLNEAPESVDLAEAERLAEDLRLLYVALTRSVWHCS 814

Query: 699  -----YTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
                   R   +   PT +    L RLL  G       L+   +   D     D   +  
Sbjct: 815  LGVAPLVRRRGDRKGPTDVHQSALGRLLQKGEPLDAAGLRACIEALCD----EDIAWQTA 870

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLIND-----PYAVYARRILKLDFIPHFKKDPDRTD 807
                 +P+          +   +++L  D      Y+   +R   +      + D D   
Sbjct: 871  QIGDNQPWRVNTVSTAELNVKTLQRLPGDNWRVTSYSGLQQRGHGIAQELMPRLDVDAAG 930

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIID-------SHFEKENLPPHIDIIWRHLF 860
              ++         +     +     H + + +D       +   ++      +  W  + 
Sbjct: 931  IASVVEEPTLTPHQFPRGASPGTFLHSLFENLDFTQPVEPNWVREKLELGGFEPQWEPVL 990

Query: 861  HKISHSFLEHEE------KIQSSIEKIFVNIPAKMAI----------------------- 891
             +   + L+           Q S     V +   + I                       
Sbjct: 991  TEWITAILQAPLNESGVSLSQLSARDKQVEMEFYLLISEPLIASRLDALIRQFDPLSAGC 1050

Query: 892  ESIGIH-----LTGFADRIDLLKSGFVDITDYKT---GDNPKK--------ETAQKLIDP 935
              +        L GF D +   + G   + DYK+   G++                  D 
Sbjct: 1051 PPLEFMQVCGMLKGFIDLVFRHE-GRYYLLDYKSNWLGEDSSAYTRQAMAAAMQAHRYDL 1109

Query: 936  QLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
            Q  L   AL      +I      R    + Y+ L+   K                     
Sbjct: 1110 QYQLYTLALHRYLRHRIADYDYERHFGGVIYLFLRGVDKEHPQQGIYTTRPD-------- 1161

Query: 992  KNLIEIVTLLQNGEQ 1006
              LI ++  +  G  
Sbjct: 1162 AGLIALMDEMFAGMT 1176


>gi|104784398|ref|YP_610896.1| DNA-dependent helicase II [Pseudomonas entomophila L48]
 gi|95113385|emb|CAK18113.1| DNA-dependent ATPase I and helicase II [Pseudomonas entomophila
           L48]
          Length = 727

 Score = 58.4 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/637 (7%), Positives = 134/637 (21%), Gaps = 156/637 (24%)

Query: 170 HALKNEKYGMWWLLA--------------ADFLKIASKY-------WTER---------- 198
           H L +      W  A                 +K   +        W  R          
Sbjct: 94  HGLAHRLLRAHWQEAGLAQNFQILDSDDQQRLIKRVIREMGLDEQKWPARQVQWFINGQK 153

Query: 199 ------------------------------LVELNASSPVGYQIALMRAEAEHLMKG--- 225
                                                      +  +    +        
Sbjct: 154 DEGLRPRHIQASGDLFLTTMRDIYSAYEQACERAGVIDFSELLLRALDLWRDQPGLLEHY 213

Query: 226 --TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                 I++     +       +  +A    G  ++   D       W     ++ +  +
Sbjct: 214 QRRFRHILVDEFQDTNAVQYAWLRLLAG--GGDSLMAVGDDDQSIYGWRGAKIENIHQYT 271

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
           ++   +                              +              +     N+ 
Sbjct: 272 ADFPDAELI--------------------------RLEQNYRSTGGILKAANALIANNSG 305

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARR 401
            L  ++         + L  A NE +EA  +   +   + +   +   A++      +R 
Sbjct: 306 RLGKELWTDLGEGEPLTLYAAFNEHDEARYVVETIESLIKQGNARSDIAILYRSNAQSRV 365

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
           ++  L R  I   I  G             + L  +    +  A+  ++  P        
Sbjct: 366 LEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVP-------- 417

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                                  +  ++       ++  +          L         
Sbjct: 418 ---------------PRGIGEKTVEAIREHARHSQSSMWDAMCQLLAAKALKGRAASALG 462

Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             ++ +      ++                    L +     +              E+G
Sbjct: 463 AFIELLDNLAAKVLDMP-----------------LHLMTQTVIEQSGLIIYHQEEKGEKG 505

Query: 582 KTLSSLFSKIIETGS-----CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
           +       +++            A+       +             E   ++ ++    +
Sbjct: 506 QARVENLEELVSAARNFETSDEDADLTPLSAFLGHASLEAGDSQADEHEDSIQLMTLHSA 565

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-R 695
           + L F  + L G+ EG++P                ++L+   +   +    +       R
Sbjct: 566 KGLEFPYVFLVGMEEGLFP--------------HKMSLEEPGRLEEERRLAYVGITRAMR 611

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
            L+ T +       +     + R +          ++
Sbjct: 612 QLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVR 648


>gi|94496824|ref|ZP_01303399.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
 gi|94423837|gb|EAT08863.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
          Length = 1057

 Score = 58.4 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 72/811 (8%), Positives = 180/811 (22%), Gaps = 83/811 (10%)

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKG 228
             +             +     +     E+             +  AE       +     
Sbjct: 290  RDDAMSHAEGLVRAAQRVMADYGRAKAEIGVIDYGDMVANAAKMLAERNEVTEAVLAEID 349

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
             +II     + P     +  +A      +++   D       +     +     S     
Sbjct: 350  CVIIDEFQDTSPIQFAFLWQLARRAPRTLIV--GDNKQAIMGFQGADPRLAEALSLQ--- 404

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
              HP   L +  ++           G        R   ++ +    D + +   + + + 
Sbjct: 405  --HPHAPLER--NWRSTAPIMEFVNGLGQYLFGERYSSLAPTRTGGDGTALEVIEQMVSG 460

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
                 K           N  + + ++A  +   LD+N  +  +      + R +     R
Sbjct: 461  RERGTKQN--------PNPAKPSHNVAERIADILDKN--EMIIEDRHTGVRRPLA---PR 507

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLN--DFMAIATLVKHPLAKFGFPEKYLSR 466
                +  ++           +L   +           +    +    L            
Sbjct: 508  DIAVLCQTSRQCADYAEKLRVLGLPVRLAENGWWKSPVVQCAVFALSLVADPADAHAALC 567

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
              +        G   +                +  +       +            L + 
Sbjct: 568  FASLGPERLDLGTGLTALTAGTAIPATGLEQLKALHDKARGLPADAVVAQVIAVAGLREW 627

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
                  PL              + +                    L  L      +  S 
Sbjct: 628  CEMLPDPLQMRADLARFEAEAAAFACAEPAPREAAGFYGNGIPVFLGWLEARATSQDDSR 687

Query: 587  LFSKIIETGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
              +   ET     +  ++ +  +    ++         +++              +FD +
Sbjct: 688  PHASGTETDGIEVVTWHSSKGREWPLVIVA----TMAHDRNPRAHEFRIEIPDFDDFDAI 743

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR--- 701
            +           + + +      ++  L  ++ E         +      R  +      
Sbjct: 744  LA------KADLSYSADYAAEEALERALAQRSEEAREDCRRLLYVALTRARDRLVIEWPK 797

Query: 702  -SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL------DWTRKLDYTTKQPHY 754
                        ++ L         +    L              +     D     P  
Sbjct: 798  PPKEWKEGNISPAQMLVEECGFAIGNGCITLGSTNFPARLTVGSDEIAAAFDGGFVAPAP 857

Query: 755  KRPKPFPPLEAQPRTY------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                    +               S +   +  P  +   R+     + +       TD+
Sbjct: 858  IARAARHAVVQGVMPLAEAIVAPSSALSTHLPLPTKLLTSRLAPGIELANADLVL-ATDK 916

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            GT  H  +   +++                    F K      +           + +  
Sbjct: 917  GTALHEGLRICLQRP-----------------ELFGKVAAHCQVSASEASAMAAQADALR 959

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF--VDITDYKTGDNPKK 926
             +          ++V  P  +A+             +DLL  G     I D+K+G  P  
Sbjct: 960  SNLAAR--GFATLYVEQPLDVALADGTTQ--CVI--LDLLAQGRDGFMIVDHKSGPVPDH 1013

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957
            E       PQL+  A A+++    ++    V
Sbjct: 1014 EARYATYWPQLAAYAGAVESMGAGKVTHAGV 1044


>gi|212703277|ref|ZP_03311405.1| hypothetical protein DESPIG_01319 [Desulfovibrio piger ATCC 29098]
 gi|212673321|gb|EEB33804.1| hypothetical protein DESPIG_01319 [Desulfovibrio piger ATCC 29098]
          Length = 283

 Score = 58.4 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 82/278 (29%), Gaps = 19/278 (6%)

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                  +      S + +L + P    A+ +                  GT  H      
Sbjct: 14   VWRTTMEMTAIRASSLPELFDCPARWEAKHLCGRRLPRS-----AAAQLGTAVHAGAAVF 68

Query: 820  IKKRINKNTPEINHLMKQIIDS--HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
              +RI  +    +    +++D+  H +++                  H    +   I  +
Sbjct: 69   DVQRILGSPITPDDAAGEVVDAIHHPKEDVDWGEDSPREAERIALALHGL--YCRNIAPA 126

Query: 878  IEKIFVNIPAK-MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET---AQKLI 933
               + V    + + I  +G+ LTG  DRI     G + I D KTG               
Sbjct: 127  KNYVAVEATCERLEITDLGLALTGTTDRITTNALGDLGIADIKTGKTAVAADGTVRTAGH 186

Query: 934  DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS--EKSL 991
              Q+ +       G+         A +  +++ +  K           + + L   E+  
Sbjct: 187  AAQIGVYELLA--GAAIGQPIAAPAEIIGLQVAKTDKGRRAAVGIITGARELLVGTEEQP 244

Query: 992  KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029
              L     ++++G+  F  + +    +       H  R
Sbjct: 245  GLLQMAARMIRSGD--FYGNPKSQTCTEKYCPVFHGCR 280


>gi|303326806|ref|ZP_07357248.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
            3_1_syn3]
 gi|302862794|gb|EFL85726.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
            3_1_syn3]
          Length = 1081

 Score = 58.4 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 70/773 (9%), Positives = 169/773 (21%), Gaps = 98/773 (12%)

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA----EAEHLMKGTKGPIIIA 233
              +  LA   +    +   +         P   +  L       EA   +       ++ 
Sbjct: 315  APFVRLAQALVAAFLQNQEQEGALPGLLVPRLAREVLEGERGVPEALCRLGTRLTYFLVD 374

Query: 234  GSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
                +     + +  +       G  +    D       W     +  +    +   +  
Sbjct: 375  EFQDTSREQWQALRPLLEEALSRGGSLTWVGDVKQSIYGWRGGEPELFDAVFDDQGLTRL 434

Query: 292  PQYSLAKLLDF------------------LDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
                  + L                    L+      + L  +        ++ + +   
Sbjct: 435  APGGERRNLPRNWRSRREVVEHNNRIFAPLENAATAQRVLAALLPGDTPPEVLTTATRRL 494

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE-EAISIAIALRMSL--DENKKKSA 390
                                    ++     D+ R+     +   LR  +          
Sbjct: 495  SRAFAGAAQQCPPKAREGGLVRAEEIQGATQDDLRDCVLERLCDLLRDEIGPRRLWSDVL 554

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            ++      AR     L   GI +     + L+         +LL  +   +D +A  T++
Sbjct: 555  VLVRGNETARVTAEGLVHEGIPVITENSLLLAEHPLIVQTVALLAFLDNPDDDIAFWTML 614

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
               +          +     +              +  +              H      
Sbjct: 615  TGSIV---LEHPQAAELDWEILHGWCAEPGQGPFHLRFRRRWPLIWRNLLAPFHSQSGLM 671

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
               +   E    L                 +       +        +   +   L    
Sbjct: 672  TPYDTVLEWFTRL---------------DVEARFPEARTFLRRFMEVLHSAEEKGLATLS 716

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
                 W ++ G+       + +     +  +  + ++    ++   +   +      L  
Sbjct: 717  TFLEHWQDKSGEE-KVPMPENMNAVRVMTIHKSKGLEAPVVILPWTSFNVRPSGRPVLL- 774

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                                E    +    N      +  +   + A + +      F  
Sbjct: 775  --------------------ERDGLRMAVPNRKALGEIYYEDLARQACENLDLLYVAFTR 814

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            A    H+  T +   +N        L  L          +     +C  +     +   +
Sbjct: 815  ARDELHIFRTGTPGLDNKSGSLCAALDILWQEAELRLPYSRGTPVECPRNGATDDEICPE 874

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                   +   P +          +K   N       +                  DRG+
Sbjct: 875  PLAAPLTEAAVPEQKWRPMQWLPRLKIFRNPLGGFAFK----------------AEDRGS 918

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL-E 869
            L H  +  L      + T +     +  +        LP   D   R    +    F  +
Sbjct: 919  LLHFCLEHL------RVTGQAEEDARAALSFGLRNYPLPVPDDPALRDSLARALAWFASQ 972

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
             E       E+ +        ++  G  L    D +     G   + DYK+G 
Sbjct: 973  PEAGRW--FEQGWPEQSL---MDEQGHVL--RMDLLVRESWG-PLVIDYKSGR 1017


>gi|54024515|ref|YP_118757.1| putative RecB protein [Nocardia farcinica IFM 10152]
 gi|54016023|dbj|BAD57393.1| putative RecB protein [Nocardia farcinica IFM 10152]
          Length = 1113

 Score = 58.4 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 74/834 (8%), Positives = 180/834 (21%), Gaps = 116/834 (13%)

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI---- 274
            A   ++      ++     + P    ++    +      ++   D       +       
Sbjct: 259  ACARVRARYRVALVDEFQDTDPLQWDILRR--SFHGHTTLVLVGDPKQAIYAFRGAEVLS 316

Query: 275  --TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
                 +   +    T +      L + LD L           +V      R         
Sbjct: 317  YLDAVAHADSRKELTRNWRSDAGLLRALDHLQGGAALGHPEISVYPVEATRPWSRLSGPA 376

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----- 387
               T             P  +  F  V    A    + A  +   L    +         
Sbjct: 377  ELITPLRLRCLPRTGAGPLNKSGFPAVGRQRAKVADDLAADLVRLLESGAEVTDGHGAGA 436

Query: 388  --------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                      A++   R     V+  L R G+   ++ G  +  T  ++    +L A+ +
Sbjct: 437  VRRPVAAGDIAVLVRTRTQIDVVRAALDRVGVASVLAGGTSVFGTPSATHWLWVLRALEQ 496

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
             +    +      P+  +   E            +  R +    D   L +        +
Sbjct: 497  PHRSDRVRLAAATPILGYPPAEID-----RGGADLVGRVSAQLRDAARLFARAGFAAVYE 551

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
            +           L  E+ E  +  + HI Q +  +                         
Sbjct: 552  RLAAQARLAPRLLGIENGERTLTDLRHIAQLLDQVALADGLG------------LTALTR 599

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
             L +   D              +  +++    +     ++   +          +     
Sbjct: 600  WLADRVRDPASGAVADRSRRLDRDAAAVQIATVHASKGLEFPIVYLPFAWDNAKNPYPGS 659

Query: 620  PKIEKSSTLFILGTLESRLLNF----------DTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
                      +L         +          +      L      +   +         
Sbjct: 660  LLFHDDDGTRVLDVGGPDAPGYAQRKLRCEAEEAGEELRLLYVALTRAKCQVVAWWAPAH 719

Query: 670  SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
            S          +G+      + +       T ++         +     +  +   +  +
Sbjct: 720  STAAAPLHRMILGRPEGGPHVPDRAPVPADTAAVPMFTAWAEPAGAAISVTAVDTAEAVE 779

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
              + R +          +        R   +  L A           + +  P       
Sbjct: 780  IRRVRVEPVTGELAAARFDRSLDLLWRRTSYSALTAGAHDLVTDAEPEDVRGPGDEPETP 839

Query: 790  ILKLDFIPHFKKD------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
             L  D              P   + GTL H ++  +     + + P++   ++       
Sbjct: 840  ALLTDEPAATAAPSLMNDLPYGAEFGTLVHGVLERI-----DTDAPDLAAEVRTRCREAA 894

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-------- 895
             +        ++   L   +  + L        +       +  ++ +            
Sbjct: 895  AELLADLDHGVLATALL-AVLRTPLGFGTLADIAARDRLSELEFELPLGGGDTPAARAAT 953

Query: 896  ------------------------------IHLTGF----ADRIDLLKSGFVDITDYKTG 921
                                          + L G+     D +  L      + DYKT 
Sbjct: 954  LGAIAELVRAHLGPADDLSGYPDLLAGLDDVTLRGYLTGSIDAVLRLPGPKFVVVDYKTN 1013

Query: 922  DNPK--------------KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
                               E  +     Q  L + AL      ++     A   
Sbjct: 1014 RLGTGDLTVGHYTRERMAAEMLRSHYPLQALLYSVALHRYLRWRLPGYDPARHL 1067


>gi|74317324|ref|YP_315064.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74056819|gb|AAZ97259.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 702

 Score = 58.4 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 63/541 (11%), Positives = 147/541 (27%), Gaps = 64/541 (11%)

Query: 30  LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK--------SL 81
           L     +   +    A++ +   ++RA  E+      I  + +   P +         + 
Sbjct: 59  LAHRVAHLVAHGADPAAILLLTFSRRAADEMVRRVERILRQVAAGRPRLAGAKLAWAGTF 118

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
             +       +      L+P  +   R      L L+            +P     L I 
Sbjct: 119 HSIGARLLR-EYAPRIGLDPAFTIHDREDSADLLNLVRHELGLADTGKRFPRKNTCLAIY 177

Query: 142 PANAIWLAKNLADIIDIIETEEKKWED-LHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
            A    LA  L D++        +WED L  L                     YW +   
Sbjct: 178 SAAVNTLAP-LGDVLQRRYPWCVEWEDELKRLFLAYVEAKQAQHVLDYDDLLLYWGQIAG 236

Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
           E   +  +G +                  I++     +    A ++  +   P+G  V  
Sbjct: 237 EPTLAREMGARF---------------SHILVDEYQDTNALQASIVRALK--PDGRGVTV 279

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D       +   T ++              Q++    +  L+      + +   +N +
Sbjct: 280 VGDDAQSIYAFRGATVRNILDFPG--------QFAPPARVVTLERNYRSTQPILAAANGV 331

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI--AIAL 378
             R+                 ++     + + ++      L+   +E ++A  +   +  
Sbjct: 332 IARA-----------------SEGYAKSLWSERESSERPQLVSVRDEADQAAFVVEEVLA 374

Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
           R       K  A++      +  +++EL R  +      G+      H   + ++L    
Sbjct: 375 RREAGIALKAQAVLFRAAQHSATLEIELNRRQVPFVKFGGLKFLEAAHIKDVLAVLRWHE 434

Query: 439 KLNDFMAIATLVK---------HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
              D +A   +++               G  + +  R       V         D + L 
Sbjct: 435 NPRDRVAGFRVLQLMPGIGPKTAGQVLDGLAQVHDVRMALQEARVPPAAAHAWDDFLGLV 494

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
           + +    AT                E       +    +  +  +     ++      L+
Sbjct: 495 AALAQPGATWPAELETIGSWYAPHLERLYDDAAVRQGDISQLEQIARTYPSRQRFLTELT 554

Query: 550 I 550
           +
Sbjct: 555 L 555


>gi|254225834|ref|ZP_04919438.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V51]
 gi|125621648|gb|EAZ49978.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V51]
          Length = 1208

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 90/883 (10%), Positives = 209/883 (23%), Gaps = 97/883 (10%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVRAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWSLEGQVQPALTYWWPEDLDKPQSKADYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   V   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLTESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E     +E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDVESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F +    +        +           + +       +  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF-LLQDGQEGGIADLQQALLKQCENLPDVVQCPPPKRFEQA 882

Query: 729  DNLK---KRGQCYLDWTRKLDYTTKQPHYKR--PKPFPPLEAQPRTYSFSEIKQLINDPY 783
                   +R     + ++ +D   +   Y     +         +     E+     D  
Sbjct: 883  YQPPKLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPLLEVGGFDLDSA 942

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
                   L+      F         GT  H++  E+  ++  ++ P    +++ +     
Sbjct: 943  QERDGAALESAERSIFNFPRGARP-GTFLHSLFEEVDFQQSAQSEPNTKIILELMESEQI 1001

Query: 844  EKENLPPHIDIIWRH----------LFHKISHSFLEHEEKIQSSIEKIFV---------N 884
            E E LP    ++                +I  +    E +    IE +           +
Sbjct: 1002 ESEWLPVLQHLVDTVLSTPLDGKTLRLQQIMAAQRLTELEFLLPIEVLDAPTLNRITQRH 1061

Query: 885  IPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL------- 932
             P       +G H     L GF D +   + G   + D+K+        A          
Sbjct: 1062 DPLSAHAGDLGFHAVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAAYHPQRLGSAM 1120

Query: 933  ----IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                 D Q  + A AL     S++      +    +FY+ L+ 
Sbjct: 1121 ADHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRG 1163


>gi|271969553|ref|YP_003343749.1| superfamily I DNA and RNA helicase-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270512728|gb|ACZ91006.1| Superfamily I DNA and RNA helicase-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 689

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 73/599 (12%), Positives = 146/599 (24%), Gaps = 76/599 (12%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
              SV     T RA  ELR       G         ++       + T         +PP
Sbjct: 53  DAQSVLAVTFTTRAAGELRQRL-RQLGTPGV---QARTFHAAALRQLTYFWPRVIGGDPP 108

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                      R+I      L D  + +      S     A+ I  AK            
Sbjct: 109 -----------RVIESKLPLLIDACRSVRKNPDRSELRDIASEIEWAK----------VT 147

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR-----A 217
           +   ED      +      + A +  +     +     + +                   
Sbjct: 148 QVGPEDYAEAARKAGRTPPVPAEEVFR-LYDAYETLRRDRHLVDFETILELTAAVMTEHR 206

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           E    ++      ++       P    L+ T     +   V+   D +     +   T +
Sbjct: 207 EVAAQIRQQYRYFVVDEYQDVNPLQKLLLDTWLGGRDDLCVV--GDPNQTIYSFTGATPR 264

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                S       HP  ++ KL+       + V     V +       +   +  P    
Sbjct: 265 YLTGFSVE-----HPDAAVIKLVRDYRSTPQVVSLANRVLDRARTPHKLALIAQRPDGPE 319

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITAD 395
            +      E                       EA  +A A++   D     ++ A++   
Sbjct: 320 PVFAEYDDEP---------------------AEAEGVARAVKKLADGGVPTREIAVLFRV 358

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSS-ILTSLLNAIFKLNDFMAIATLVKHPL 454
              +   +    + G+   +               +  L  A     D   +A  V H L
Sbjct: 359 NAQSEVYEQAFAKAGVPYLLRGADRFFERPEVRQAVVLLRGAARSAADDDELAPTVHHIL 418

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
           A  G   +              +  +    +  L  L  D  A   +         R + 
Sbjct: 419 AGIGLTPEA---------PGGGKAREKWESLRALADLAEDLAAEGGDLPAFVAELERRAS 469

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           E     V         +  L   K  +      + ++D     +       ++E R+L  
Sbjct: 470 EQHAPPVE-----GVTLASLHAAKGLEWDAVFLVGVTDGMMPIIYAETPDQIEEERRLLY 524

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
           +        L+  ++     G         ++D +T     ++            +   
Sbjct: 525 VGITRARAHLALSWALARSPGGRRSRRPSRFLDGLTGRPAAQSRASSPAPKDRRAVAAP 583


>gi|297202231|ref|ZP_06919628.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148067|gb|EDY54286.2| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 625

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 80/271 (29%), Gaps = 42/271 (15%)

Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
             +      +  +    W R LD  T +    R            + + S++ +L  DP 
Sbjct: 367 PAERATLSPEEARAIASWDRDLDALTGELLRAREAVTDVPLPA--SLTASQVLRLAADPD 424

Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
            + A+ + +    P          +GT FH  +                   + +     
Sbjct: 425 GL-AQELARPMPRPPQ----PAARQGTRFHAWVE---------------ARFEALTLPML 464

Query: 844 EKENLPPHIDIIWRHL-FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
           E E+LP     I        +  +F   E   +       +  P ++AI      + G  
Sbjct: 465 EPEDLPGSDAEIADERDLEALKDAFERTEYAHR---TPYCLETPFQLAIAGR--VVRGRI 519

Query: 903 DRIDLLKSG---FVDITDYKTGDNPKKETAQKLIDPQLSLEAAA-LKAGSFSQIDCRKVA 958
           D +     G     +I D+KTG     +        QL++   A  +          +  
Sbjct: 520 DAVYRQSDGDTTTYEIVDWKTGRTRTADP------LQLAVYRLAWAERQGV----PVESV 569

Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
              ++ ++    +       +      L+++
Sbjct: 570 TATFLYVRTGDVVRPTNLPDRTALERLLTQE 600


>gi|60172718|gb|AAX14552.1| ATP-dependent nuclease subunit B [Lactobacillus reuteri]
          Length = 567

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/441 (9%), Positives = 117/441 (26%), Gaps = 34/441 (7%)

Query: 156 IDIIETEEKKWEDLHALKNEKYGM-------WWLLAADFLKIASKYWTERLVELNASSPV 208
           ++ ++      +DL  +               WL     ++     +  RL +    +  
Sbjct: 137 LEELKNANITADDLTDIIYRVKSANDPAANQAWLAKMYDVETIYHAYEARLRDRYIGNSE 196

Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
            Y+  +  +  +   +  K    I           +++  +  +     +   LD   P 
Sbjct: 197 LYRQLV--SYLQKSPEVAKMHFFIDRFAQFTANEQQVVDALITNAASTTISLTLDRGYPD 254

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
                    +                   +L  F  + +++VK L NV+     R  V +
Sbjct: 255 QNH-----PNPQELPPKNNLFYSSAMQFHRLWKFGQMHQKEVKVLQNVAFATTPR--VDA 307

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---EN 385
           +            ++ +            ++  +   N   E  ++A  +R  +      
Sbjct: 308 ELQQVDSYFKRYASEPIGPGEREELLDPQNIQFMTTTNRMTELNNVATQIRQLVASGKYR 367

Query: 386 KKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
            +   +++   +  + +         I +       +      ++LT+LL    +     
Sbjct: 368 YRDFLILSRHLDGYQTMIEPVFAAHNIPVFNDHERLMDNHPLVTLLTTLLELPQRGYRTA 427

Query: 445 AIATLVKH----PLAK----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            I  L+K     P        G  +   +        +       +    +    +    
Sbjct: 428 DIIQLLKTWLLVPRTGTGDLMGLSDFQAAVFTTENWCLKQAIEGKNAWTTNDPEKIKQLW 487

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                N   P ++    E+  +   L+ D +   + P+        +        +    
Sbjct: 488 QAPGTNLTDPKYEQSRLEKLNDQLALVKDFVANHLLPVFDQFKQAQTGQ------ELATA 541

Query: 557 TVTCLQNVCLDEHRKLPNLWF 577
               L  + + +       + 
Sbjct: 542 LYQFLAAMGVTDRLYAWQQYQ 562


>gi|325274372|ref|ZP_08140466.1| exodeoxyribonuclease V, beta subunit [Pseudomonas sp. TJI-51]
 gi|324100494|gb|EGB98246.1| exodeoxyribonuclease V, beta subunit [Pseudomonas sp. TJI-51]
          Length = 1224

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 94/930 (10%), Positives = 211/930 (22%), Gaps = 98/930 (10%)

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
            +  W      +  DL        P   A A          +D ++T  +  + L +    
Sbjct: 273  LHAWATDEQQVELDLGTGFTRLTPAGMAEAWKGEPPAHPGLDAMQTLAQHLQALDSPDAL 332

Query: 176  --KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA----EHLMKGTKGP 229
              ++   W+ A        +    R  E+     +      + +EA      L++     
Sbjct: 333  LLEHAANWVSAR------FEVEKRRRAEMGFDDMLVRLQHALASEAGERLAGLIREQFPV 386

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +I     + P    +   +           +    D       +      +       T
Sbjct: 387  ALIDEFQDTDPVQYGIFERIYQISENRPDTGLFMIGDPKQAIYAFRGADIYTYLAARRAT 446

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN--EMYGRSMVISKSFLPPDTSDMRNTDI 344
            +   H   +  +    +      V                     + LP      +    
Sbjct: 447  SGRLHSLDTNYRSSKAMVAAVNQVFLQAEARQGGRGAFLFRGADDNPLPFIEVHAKGRSE 506

Query: 345  LENKIPNIQKCFSDVALIE------ADNEREEAISIAIALRMSLDEN------------- 385
                            L        +   ++ A S A  +   L+               
Sbjct: 507  QLVINGEASAALQCWQLQSEEPVSGSVYRQQLAASCASHIVDLLNGGQQGTAGFRSAEGA 566

Query: 386  -----KKKSALITADRNLARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                     A++  D + A+ V+ EL  R   ++ +S    +     +  L + L A  +
Sbjct: 567  LRPCLPSDIAILVRDGHEAQLVRAELAARDVRSVYLSDKDSVFAAQEAHDLLAWLKACAE 626

Query: 440  LNDFM---AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
             +      A    +   L+                 ++  R  + ++    +  ++   +
Sbjct: 627  PDSERLLKAALASLTLGLSLPALDRLNQDERVWEGWVMRFRYYRETWQRQGVLPMLRHLL 686

Query: 497  AT--QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                            R+      LA LL     +        +        +    +  
Sbjct: 687  HDFQLPRTLIRRSDGERVLTNLLHLAELLQQAAGELDGEQALIRHLAEHLASSGQAGEDQ 746

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
             L +   + +                        SK ++      A           L  
Sbjct: 747  ILRLESDEQLVKVVTIHKSKGLEYPLVYLPFICTSKPVDGSRLPLAWHDPEGHAHLTLTP 806

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
             +    + +       L  L   L         G+ +             S +       
Sbjct: 807  SQEQIERADDERLAEDLRLLYVALTRAQHACWLGVADLKRGNQKTSQLHRSALGYLLGGG 866

Query: 675  KTAEKYIGQAAHDFEMANGTRHLI---YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
                     A     +A G  H+       + ++      A R L               
Sbjct: 867  LALASSAQLADWLQALAAGCPHIACPGLPPAQQQVYRMPHAERELLPARKPRRAAAEHWW 926

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRP-KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
                       + L   + Q    +  +       +       +I +    P        
Sbjct: 927  IASYSALRVGDQTLGADSSQAQQLQDDEVVDVQVLREVPADSGDIHRFPRGPNPGTFLHG 986

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE------ 844
            L L++           +   +   +     ++      P ++  M++++           
Sbjct: 987  L-LEWAGREGFSLVSRNPQLIERTVGQRCNRRDWTGWIPTLSQWMQRLLSEALPLPGSGQ 1045

Query: 845  ------------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                        +         +      ++      H    + + +   +N        
Sbjct: 1046 SVTLGELCTYQIEMEFWFASQRVDAEQLDRLVAR-HTHPGLARPAAQPTLLNGMF----- 1099

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL-----------IDPQLSLEA 941
                   GF D +  L  G   +TDYK+        A               D Q  L  
Sbjct: 1100 ------KGFIDLVFEL-DGRYYVTDYKSNWLGPDTQAYDALAMEKAILEHRYDLQYVLYL 1152

Query: 942  AALKAGSFSQID----CRKVANLFYIRLKQ 967
             AL     +++      R V    +I L+ 
Sbjct: 1153 LALHRQLRARLPDYDYDRHVGGALFIFLRG 1182


>gi|167725793|ref|ZP_02409029.1| hypothetical protein BpseD_42648 [Burkholderia pseudomallei DM98]
          Length = 269

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 77/266 (28%), Gaps = 21/266 (7%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             T   S    L +  Y      +LK+  +   +        GT  H       + R++ +
Sbjct: 6    YTVRASSWAGLFDCAYRWEGIHLLKMRNVVGLRAAL-----GTAIHAGTAVFDQARLDGS 60

Query: 828  TPEINHLMKQIIDSHFEKEN-LPPHIDIIWRHLFHKISHSFLE---HEEKIQSSIEKIFV 883
               ++      +D   +  N   P  D +      +I  S       E   +     + +
Sbjct: 61   GLTVDDAAGAFVDKLRDPGNEFDPARDDLSLSEAERIGLSLTTKYCLEVAPRYDFIAVEM 120

Query: 884  N-IPAKMAIESI-GIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQL 937
               P  +       I LTG  D  R+     G   I D K+G +  ++     K   PQ+
Sbjct: 121  ETKPLDIDCGGGIVIRLTGTMDRARVRRTALG-PGIADLKSGSSAVQKGVAVTKGHGPQI 179

Query: 938  SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
                   +  +   I          I LK K   +  T   K      +  +    LIE 
Sbjct: 180  GTYEMLYEHTTGELIADT----AEIIGLKTKGMPEVATASVKDAKRVMIGTEDEPGLIEF 235

Query: 998  VTLLQNGEQPFISHLRLSEKSNIQSE 1023
               +    + F  + +          
Sbjct: 236  AADMFRTGR-FYPNPKSLLCDAKYCP 260


>gi|313894359|ref|ZP_07827924.1| ATP-dependent nuclease subunit A [Veillonella sp. oral taxon 158 str.
            F0412]
 gi|313441183|gb|EFR59610.1| ATP-dependent nuclease subunit A [Veillonella sp. oral taxon 158 str.
            F0412]
          Length = 1304

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 48/165 (29%), Gaps = 19/165 (11%)

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
            K   +   +        GTL H  +  L   +  +        + + +D+   K      
Sbjct: 1126 KPQALQSEEDVLTGAQWGTLMHEAMQWLPLAKYTQ------ASLTKELDALVTKGTFTEE 1179

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI----------ESIGIHLTGF 901
               +       +   F     K   + ++I   +P  M            +   + L G 
Sbjct: 1180 ERNLLSD--TSLYKFFSSDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGEDLFLQGI 1237

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             D     + G   + DYKT      E   K    Q+ L   AL+ 
Sbjct: 1238 IDTAFE-EDGGWVLVDYKTDRVKSGEDLIKRYKIQMDLYKEALQR 1281


>gi|313139663|ref|ZP_07801856.1| superfamily protein DNA and RNA helicase [Bifidobacterium bifidum
            NCIMB 41171]
 gi|313132173|gb|EFR49790.1| superfamily protein DNA and RNA helicase [Bifidobacterium bifidum
            NCIMB 41171]
          Length = 1411

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 892  ESIGIHLTGFADRID--LLKSGFVDI--TDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            + + + L+G  DR++  ++  G   +   DYKTG  P  +      D QL      L   
Sbjct: 1198 DRLTVRLSGRIDRMETRIMPDGKRHVRLIDYKTGKVPSTKAIFN--DLQLVCYQLGL--- 1252

Query: 948  SFSQIDCRKVANL 960
            +F +   R    L
Sbjct: 1253 AFPENGPRGAEAL 1265


>gi|313667286|ref|YP_004049687.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
 gi|313153917|gb|ADR37767.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
          Length = 638

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 77/706 (10%), Positives = 169/706 (23%), Gaps = 102/706 (14%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE-FIEITGKKSTILP 76
              ++    +G                  V +   T  A +E+R     E    K     
Sbjct: 14  PAAVVAGAGSGKTRAATLRAARLARTGERVGLVTFTASAAEEMRQRVLAEDVPAKHVWA- 72

Query: 77  IIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
              +   +  +                 ++    L    RL     ++  D         
Sbjct: 73  --GTFHSLAFQILRQFPEAGGYEGFPEVLTPNDELRLFRRLWAELLDQDLDAELRRKLVK 130

Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
            L           L    A   + +E      E L AL                    + 
Sbjct: 131 ALGFFRKARAEEALEGWAARAGESLE---LDAEMLEALMISFQLRKREAGLASFDDLIEG 187

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            +  L + +                          +I+     +  A    ++ +     
Sbjct: 188 ASRALGDKDV---------------RKWADRRFPFLIVDEYQDTSRAQETFLAALMPGEA 232

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             +++ G D +     W     ++     +      +PQ  L  L       R  ++   
Sbjct: 233 PNLMVIG-DPNQAIYGWRGAGSRTFERFQAR-----YPQAVLYPLRKNYRSTRAVLR--- 283

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                +        +++   +         +    PN     +DVA       RE A ++
Sbjct: 284 LAERAIARLYRSGQEAYYRLEGVKEEGEPPVLLTPPNAAAEATDVA-------REVARAV 336

Query: 375 AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
           A  +        ++ A++         V+  L R G+   +  GI LS       L  LL
Sbjct: 337 ASGV------PPEEIAVLARSSMQLAGVEDRLARLGVATRLLGGIRLSERREVKTLVQLL 390

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            A                                      +L        I +    + +
Sbjct: 391 KAA------------------------------------WSLHERALVDFIEEAVPGLGE 414

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
           R  T+  +   P+        D          + Q +    T      +T   ++   + 
Sbjct: 415 RTLTRVEHAARPYNLVDRIMNDGAFVRGFSTRVQQGLFMTRTLLQLARATFEGVTGEAFA 474

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           +      Q++  +          ++     +          +       E    +  L+ 
Sbjct: 475 ERFREFAQDLYGELLPGYLARIGKQGPNEEARRRHLERFVATVEAFAREEAEGGLDDLLA 534

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                 + +    + +      + L F+ + + G+ EG +P                  L
Sbjct: 535 RLAF-LEQQDGPAVTLGTVHAVKGLEFEVVFVVGMVEGAFPI-----------------L 576

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLREN--NIPTIASRWLQR 718
                   +    +  A   +  +Y  +            SR+L+ 
Sbjct: 577 ADDSDPEEERRLFYVAATRAKRRLYLSAPTYGPRGKILQPSRYLEE 622


>gi|54024514|ref|YP_118756.1| putative RecC protein [Nocardia farcinica IFM 10152]
 gi|54016022|dbj|BAD57392.1| putative RecC protein [Nocardia farcinica IFM 10152]
          Length = 1112

 Score = 58.0 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 83/880 (9%), Positives = 212/880 (24%), Gaps = 62/880 (7%)

Query: 39  LNPLLLASVTIYVPTKRAIQELRSEFIEITG----KKSTILPIIKSLGDVVEEKFTADLL 94
             P   A+  + VP K   + L      + G     +  +   I+               
Sbjct: 25  PQPDPFAAEVVAVPAKGVERWLTQRLSAVLGVSAGGRDGVAANIRFPSPAALVAEALAAC 84

Query: 95  LSYNL-NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL-SLPISPANAIWLAKNL 152
                 + P ++ + +  L R+I     +    +   +  +P              A  L
Sbjct: 85  TGIAPEDDPWAHQRVVWTLLRVIDRAVAEPWCAVLARHLGAPSRGRDHRIGRRYATAAQL 144

Query: 153 ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
           A + D    +      L                  L+   + W     E+ + SP     
Sbjct: 145 AALFDSYAAQRPAL-LLDWAAGGDGDGAGGEVPADLRWQPRLWRMLRAEIGSPSPAERLA 203

Query: 213 -ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
            A  R  AE  +      + + G T        ++  V       + L      +    W
Sbjct: 204 PACERLRAEPGLLDLPERLSLFGVTRLTTDQLAVLDAVGAGREVDVWLVHPSPAL----W 259

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
           + + ++      +  T ++  ++ L   L     + +         +     +       
Sbjct: 260 SALADRPPARARAADTSASAVRHPLLTGLARDVRELQQRLAGTGAIDTGPLSAPEAPSPQ 319

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----K 387
                + ++     +   P        V +        +   +   L      +     +
Sbjct: 320 QLSLLAGVQAGIRDDAWPPARLPADGTVQVHACHGPARQVEVLRDCLLGLFAADPTLEPR 379

Query: 388 KSALITADRNLARRVKLEL---------------TRFGINIDISAGIPLSTTLHSSILTS 432
              ++  +      +                       + + ++      T    +++ +
Sbjct: 380 DVLIMCPEVEAYAPLVRAAFGARGGADEAPESAHPAHLLRVRLADRGRGVTNPLLAVVQT 439

Query: 433 LLNAIFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
           LL           +  L           F        R   A         +       L
Sbjct: 440 LLELADGRVTVTQVLDLAASETVRRRCGFDDDAIERLREWAAAAGARWGIGQRQRQAFGL 499

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL-------VDHILQCITPLVTYKTNK 541
                + +    +   +        ++  +LA+ L       VD   +    +       
Sbjct: 500 ADFAQNTLNGAVDRILLGVTADESGDDWLDLALPLDDVDSNDVDLAGRFAEFVDRLAVCL 559

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
               G    ++W ++    L+ +      +              +  +   E    +   
Sbjct: 560 RDLRGPRPATEWAQVLGRALELLTDVPDSQSW------VRTEARAEIAAATEHAGDVPLR 613

Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
             +   +    +     +        L +   +  R +    ++L GL++ V+P+    +
Sbjct: 614 LADVAVLFADRLAARPTRANFRTGE-LTVCTMVPMRSVPHRVVVLLGLDDDVFPRTGGVD 672

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY-TRSLRENNIPTIASRWLQRLL 720
                  +  L  +       Q   D  +A   R LI+ T +      P   +  +  LL
Sbjct: 673 GDDVLAREPLLGERDPRSEDRQLLLDAVLAARERLLIFHTGADPVTGSPRPPAIPVAELL 732

Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
            +       +   +                              A+            + 
Sbjct: 733 DVVRAHVGADAMAQVLTRHPLQSFDRRNFDPAAPFSFDTVALAGARAAARVPEPAPPFLP 792

Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
           +P     R  + L  +  F +           H +   L ++   +   E    +   + 
Sbjct: 793 EPLPPAERGDVALADLIAFAE-----------HPVRGFLWQRLGLRVP-EHEEDLADALP 840

Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
              +        + +          + L   E  + ++  
Sbjct: 841 IELDGLAKWELGERMLAARLTGADPAGLRAAEWRRGTLPP 880


>gi|258406520|ref|YP_003199262.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
 gi|257798747|gb|ACV69684.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
          Length = 1027

 Score = 58.0 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/341 (9%), Positives = 70/341 (20%), Gaps = 56/341 (16%)

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           + E                 ++       +     ++I            L+  +   P 
Sbjct: 610 YQEAKARRGVVDFTDLLQKWLQGLTNG-ARPEWTQVLIDEIQDLTGLQLNLVQALC-PPQ 667

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
           G       D       +      +    S                           +   
Sbjct: 668 GHGFFGIGDPDQSIYGFRGAVSTTAEWLS---------------------------RTWP 700

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
            ++     R+   +   +    +           +   +     + + E  +   EA  I
Sbjct: 701 ELTPLSLQRNYRAAAPLVQAAGTV----FPERPPLRPQRSVQGQIIVCETPSAWREASWI 756

Query: 375 AIALR--------------MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
           A   R               + + +    A++   R L R +  +L + G+   +    P
Sbjct: 757 ATQARTLIGATAHSQADSGDTGETSPGDIAVLVRTRALLRPLAEKLDQAGVPCSVPEEEP 816

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
                    L   + A F              P             A  A          
Sbjct: 817 FWRDNRVQDLLETVRAAFDRA---------VTPPWDCPEAVLGQGPAGMAAYWAQSGPVD 867

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
             +        +    A Q +   +  W +R    D     
Sbjct: 868 PLFWQSRAFQQLQQAFADQGDWEALLTWLARQDTLDTVRHR 908


>gi|238919307|ref|YP_002932822.1| DNA helicase IV [Edwardsiella ictaluri 93-146]
 gi|238868876|gb|ACR68587.1| helicase IV [Edwardsiella ictaluri 93-146]
          Length = 700

 Score = 58.0 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 59/248 (23%), Gaps = 13/248 (5%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
               +RA QE+     +  G         ++   +              ++   S+ Q  
Sbjct: 263 LAFGRRAAQEMTQRLRQTPGCAEV---QARTFHGLALYIVNQTARRPVAISRLASDRQAR 319

Query: 110 --LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--------LAKNLADIIDII 159
               LA        K           + L   I      W        LA  LA  + ++
Sbjct: 320 DAFLLAEWQRQCAEKKSQAKGWRQWLALLFDDIPEREDFWQDAALQARLAPRLAYWVGLL 379

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
                    +    +E     +      L    K W   L +  A               
Sbjct: 380 REHGGSQAAMVEQASEGLRAPFQQRLRLLTPLLKAWKAALKQEGALDFPALLQQAQAQLE 439

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
           +         I++       P  ARL++ + N  + + +    D       ++      T
Sbjct: 440 QGRFISPWRHILVDEFQDISPPRARLLAALRNQNSHSALFAVGDDWQAIYRFSGAQLTLT 499

Query: 280 NITSSNTT 287
                   
Sbjct: 500 TAFHHYFG 507


>gi|302845565|ref|XP_002954321.1| hypothetical protein VOLCADRAFT_95122 [Volvox carteri f.
           nagariensis]
 gi|300260526|gb|EFJ44745.1| hypothetical protein VOLCADRAFT_95122 [Volvox carteri f.
           nagariensis]
          Length = 509

 Score = 58.0 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/397 (12%), Positives = 101/397 (25%), Gaps = 42/397 (10%)

Query: 197 ERLVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             L   NA           ++  +  +  +  + +   II+     + PA  + +  +  
Sbjct: 23  RHLRRNNAVDFADLICLPVRLLRVDQQLRNSWRASFDHIIVDEFQDADPAQYQFVRLL-- 80

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD-FLDIKREDV 310
               + +    D       W      +            H      ++    L +    V
Sbjct: 81  LARSSSLFVVGDPSQAIYGWRGAEVNN---------MRKHLVQDFPRIATFHLPVNYRSV 131

Query: 311 KRLGNVSNEMYGRSMVISKSFL-PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
             +  +++ +        + +                 + P   +    V L    +   
Sbjct: 132 PEIIELADAIRNCGGDKDELYKAQVAARRPVAAAAAAAQRPKWARGDFPVKLSMYMSPEL 191

Query: 370 EAISIAIALRMSLDENKK---------KSALITADRNLARRVKLELTRFGINIDISAGIP 420
           EA  IA  +   +   ++           A++   R+ +R  + ELTR G+   +  G P
Sbjct: 192 EAEEIAKQISNCVRAGQRSGGDGNELGDIAVLYRRRSQSRPFEEELTRRGVKYTVVGGQP 251

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIA-TLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
                  +   + L+ I            ++  P    G       +             
Sbjct: 252 FWEYKEIADAVAYLHLILAPTQSDVFLERVINTPKRGLGPRTVKQLQLAART-------- 303

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                 M L  L+    ++  +        S   E D    V   D        L T K 
Sbjct: 304 ----SGMTLGELLFGGSSSGSSGNGGGSGSSV--EADFAKGVDPADVPSGSAALLATVKL 357

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            K +  G   + D          +    +      L 
Sbjct: 358 TKTARKGIQDLRDLVYKLRALAADDASVDRLVDKALE 394


>gi|224282511|ref|ZP_03645833.1| Superfamily I DNA and RNA helicase [Bifidobacterium bifidum NCIMB
            41171]
          Length = 1427

 Score = 58.0 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 892  ESIGIHLTGFADRID--LLKSGFVDI--TDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            + + + L+G  DR++  ++  G   +   DYKTG  P  +      D QL      L   
Sbjct: 1214 DRLTVRLSGRIDRMETRIMPDGKRHVRLIDYKTGKVPSTKAIFN--DLQLVCYQLGL--- 1268

Query: 948  SFSQIDCRKVANL 960
            +F +   R    L
Sbjct: 1269 AFPENGPRGAEAL 1281


>gi|258627298|ref|ZP_05722082.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM603]
 gi|258580336|gb|EEW05301.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM603]
          Length = 1208

 Score = 58.0 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 90/893 (10%), Positives = 205/893 (22%), Gaps = 117/893 (13%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQAVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWTLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   V   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLAESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDTESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F            +  +E  I  +    L++   L   D  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF----------LLQDGQEGGIADLQQALLKQCENL--PDVA 871

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                 +         KLD                      +    +     +DP      
Sbjct: 872  QCPPPKRFEQAYQPPKLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQDIPL 931

Query: 789  RILKLDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTP---- 829
              +    +   ++                      GT  H++  E+  ++   + P    
Sbjct: 932  LEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKI 991

Query: 830  ------------EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI--SHSFLEHEEKIQ 875
                        E   +++Q++D+          + +       ++      L  E    
Sbjct: 992  ILDLMESDQIEAEWLPVLQQLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDA 1051

Query: 876  SSI-EKIFVNIPAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
             ++      + P       +G H     L GF D +   + G   + D+K+        A
Sbjct: 1052 PTLNRITQRHDPLSAHAGDLGFHPVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAA 1110

Query: 930  QKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                           D Q  + A AL     S++           +FY+ L+ 
Sbjct: 1111 YHPQRLGSAMADHRYDLQYQIYALALHRFLRSRLANYDYELHFGGVFYLFLRG 1163


>gi|331697795|ref|YP_004334034.1| exodeoxyribonuclease V subunit beta [Pseudonocardia dioxanivorans
            CB1190]
 gi|326952484|gb|AEA26181.1| exodeoxyribonuclease V, beta subunit [Pseudonocardia dioxanivorans
            CB1190]
          Length = 1137

 Score = 58.0 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 88/888 (9%), Positives = 197/888 (22%), Gaps = 112/888 (12%)

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
             A   ++     +++     + P   R++S          ++   D       +      
Sbjct: 264  AAAARLRSRYRVVLVDEFQDTDPVQWRILSAA--FHGHTTLVLIGDPKQAIYAFRGADVV 321

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDI-----------KREDVKRLGNVSNEMYGRSMV 326
            S    +++         +       LD                V      +         
Sbjct: 322  SYLQAATDAGERFTLDRNFRSDRAVLDAVDALFHGAALGDPRIVVHHVEAARPGRSLRGS 381

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLD 383
               + L       +    L +++  +      VA   A        S A  +        
Sbjct: 382  TCDAPLRVRVVGTQRLGRLFHRLGRVDAARPQVAADVAAQIAALLASGASVVPADGVERA 441

Query: 384  ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                  A++    + A  V   L   G+   ++    + TT  +    +LL A+ + +  
Sbjct: 442  VLPGDVAVLVRTNDQAELVLRTLREAGVPAVVTGTRSVFTTPVAGEWLTLLEALEQPHSG 501

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            + +        A     +     A   +E +       +  +       L    + +   
Sbjct: 502  LRLRAAALTCFAGLTVTDLCGDDADAVVETLGDDLRDWAGALRGRGVAALLEAVSARRRL 561

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCI-------TPLVTYKTNKNSTCGNLSISDWTKL 556
                      +        +   +           + LV +   +    G+ + ++ ++ 
Sbjct: 562  AERLLARTDGDRTLTDLRHIGQALHHAATQEHLGPSALVEWLRRRIEEAGSDTGAERSRR 621

Query: 557  TVTCLQN----------VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              +                      +P  W     +   +   +       +        
Sbjct: 622  LESDADAVQIVTVHRSKGQEYPIVAVPFAWDRNVQEPTLARLHEGPRQERVLDVGGPSGP 681

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG-GLNEGVWPKNTAKNPFLS 665
              + R       +   +       L    S+LL +         +           P  +
Sbjct: 682  HFLERQGAHLAEEAGEDLRLLYVALTRARSQLLTWWVPATTTSKSALHRMLAGGAGPGET 741

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
                  +       +           +G+ H++  +   +   P          L     
Sbjct: 742  PRETCAVPPDPGPVFDALVRRAGTGPDGSPHVVVEQVGDDVPAPWSPPARPVPPLDAARF 801

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
            D   +L  R   Y   T               +P  P  A         +          
Sbjct: 802  DRDIDLDWRRTSYSALTAAAHDAGAHTPAVVSEPEDPGIADEPAEPGPLLFT-------- 853

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK------------------- 826
             A               P  T  GTL H ++        +                    
Sbjct: 854  AADPAAAQAVPSPMADLPMGTAFGTLVHAVLESADTTAADLRGELAARARAELARRPAAV 913

Query: 827  NTPEINHLMKQIID---------SHFEKENLPPHIDIIWRHLFHK---------ISHSFL 868
            +  E+   +  ++          +          +  +   L            +     
Sbjct: 914  DPDELAAALVPVVRTPMGPLVGGAALADVAPADRLSELDFELPLAGGDRPGPSPVLADVA 973

Query: 869  EHEEKIQSSIEKI-----FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT--- 920
                +   + + +      ++ P        G  LTG  D +  +  G   + DYKT   
Sbjct: 974  RLLRRHLPADDPLVGYPDHLDAPLLAEQALRGY-LTGSIDAVLRVG-GRYVVVDYKTNWL 1031

Query: 921  ------GDNP-----------KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV----AN 959
                  G  P            +         Q  L   AL      ++           
Sbjct: 1032 GPAGPDGHVPLTSAHYGAAALTQAMTSAHYPLQALLYGVALHRYLRWRLPGYDPGTHLGG 1091

Query: 960  LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
              Y+ L+        T       A   S      LI  ++ L +   P
Sbjct: 1092 SLYLFLRG--MCGPDTPAADGVPAGVFSWAPRPALITDLSRLLDEGAP 1137


>gi|220916544|ref|YP_002491848.1| ATP-dependent nuclease subunit B-like protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954398|gb|ACL64782.1| ATP-dependent nuclease subunit B-like protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 1029

 Score = 58.0 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 75/269 (27%), Gaps = 31/269 (11%)

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
              D              + P       A P  ++ + ++     P+  +  ++L+L   
Sbjct: 690 ARRDAVLARRPAPFAGQVEAPALAALAAALPEEWAPTRLEGFARCPFRGFLAQVLRLPDR 749

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL-------- 848
                D D  D G+L H ++   ++ R+ +     +     + +                
Sbjct: 750 AAADLDIDPRDEGSLLHAVLERFVRGRMERRAWPPDGGEADLAEMRAAAAEAFARFEREG 809

Query: 849 ---PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA---------KMAIESIGI 896
               P      R          +  E +    +    V +           ++A +   +
Sbjct: 810 RTGDPAAWAARREAVLARLDRVVRAEARDHGGLAPAAVELRFGRGGLLPALELAWDGERV 869

Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKK------ETAQKLIDPQLSLEAAALKAGSFS 950
            L G  DRID    G + + DYK   N           A      Q+     A       
Sbjct: 870 RLEGRVDRIDAGP-GRLLVVDYKNARNGDAYADGLDPEAFGDAAFQIPAYLMAAAR---- 924

Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKK 979
               R      Y  L++  +++ +  D  
Sbjct: 925 AFPGRPRLEATYALLRRAERLEPVALDAD 953


>gi|121726748|ref|ZP_01679966.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V52]
 gi|121630782|gb|EAX63166.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V52]
          Length = 1208

 Score = 58.0 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 89/882 (10%), Positives = 208/882 (23%), Gaps = 95/882 (10%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + + IE    +   L                   K    + +           +    A
Sbjct: 309  ALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLS-------FDDLLTQLSA 361

Query: 214  LMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +  + + L+      +     I     + P    + S +        +L   D      
Sbjct: 362  ALDNDEQGLLGERIRSLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIY 421

Query: 270  IWNTITEK--------------STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
             +                          S+           +          +   +   
Sbjct: 422  AFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVA 481

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDI-----LENKIPNIQKCFSDVALIEADNEREE 370
             S     R   +     P  T              +      + C + +  I   +    
Sbjct: 482  ASPGADKRHWTLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTAS---- 537

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            A   A   R    E    + L+               +   ++ +S    +  +  +  +
Sbjct: 538  ASGAATFHRGEAIEAGDLTVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDI 597

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
              LL A+++  D   +   V   L      E              +   +    +   + 
Sbjct: 598  ERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERG 657

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    A          W +    E           +   +      +        +  +
Sbjct: 658  VLPMLRAVLTQRHIAERWLTESEGE---------RWLTDYLHISELLQQATREIDSDQGL 708

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
              +    +            ++  L  E     +       I     ++   +    +++
Sbjct: 709  LRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV-----TIHKSKGLEYPLVFLPFVMS 763

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVM 668
                 E      E ++T   L   E  L   D   L      ++   T      F+    
Sbjct: 764  YRESSEGKYYDAESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAP 823

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              + N         ++A  F +    +        +           + +       +  
Sbjct: 824  LRNGNSSQEPTSAHRSAMGF-LLQDGQEGGIADLQQALLKQCENLPDVAQCPPPKRFEQA 882

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                K  +  L          ++             +  R     E+  L    + + + 
Sbjct: 883  YQPPKLDERELTARELSQAIDRRWRVTSYSGLVMQSSHARHDPLQELPLLEVGGFDLDSA 942

Query: 789  RILKLDFIPHFKKD----PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
            +      +   ++     P     GT  H++  E+  ++   + P    +++ +     E
Sbjct: 943  QERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILELMESEQIE 1002

Query: 845  KENLPPHIDIIW----------RHLFHKISHSFLEHEEKIQSSIEKIFV---------NI 885
             E LP    ++                +I  +    E +    IE +           + 
Sbjct: 1003 SEWLPVLQQLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDAPTLNRITQRHD 1062

Query: 886  PAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL-------- 932
            P       +G H     L GF D +   + G   + D+K+        A           
Sbjct: 1063 PLSAQAGDLGFHAVQGMLKGFIDLVFQYQ-GRYYVLDWKSNHLGDDPAAYHPQRLGSAMA 1121

Query: 933  ---IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                D Q  + A AL     S++      +    +FY+ L+ 
Sbjct: 1122 DHRYDLQYQIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRG 1163


>gi|310286973|ref|YP_003938231.1| ATP-dependent DNA helicase, UvrD/REP family [Bifidobacterium bifidum
            S17]
 gi|309250909|gb|ADO52657.1| ATP-dependent DNA helicase, UvrD/REP family [Bifidobacterium bifidum
            S17]
          Length = 1427

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 892  ESIGIHLTGFADRID--LLKSGFVDI--TDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            + + + L+G  DR++  ++  G   +   DYKTG  P  +      D QL      L   
Sbjct: 1214 DRLTVRLSGRIDRMETRIMPDGKRHVRLIDYKTGKVPSTKAIFN--DLQLVCYQLGL--- 1268

Query: 948  SFSQIDCRKVANL 960
            +F +   R    L
Sbjct: 1269 AFPENGPRGAEAL 1281


>gi|289769235|ref|ZP_06528613.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
 gi|289699434|gb|EFD66863.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 770

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/310 (9%), Positives = 81/310 (26%), Gaps = 3/310 (0%)

Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
           + A++         ++  L    + +++     L      + L ++   +       ++ 
Sbjct: 9   EIAVLCRTATDFAEIQGALVARDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLV 68

Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK---NNTH 504
            L+  P  + G  +  L   +  L +   R   +      L   V     ++     +  
Sbjct: 69  RLLSGPRWRIGPRDLALLGRRARLLVSHARVEGDDDPDRRLAEAVEGVDPSEVISLADAL 128

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
               ++ L     +  +            L T          +  +    ++       V
Sbjct: 129 DTFLETPLDGTGDDDGLPFSADARVRFARLATELRELRRALSDPLMDVLHRVLAVTGLEV 188

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
            L            E       + +            A           +          
Sbjct: 189 ELSASPHALAARRRETLSNFLDVAASFAAGDGEATLLAFLGFLRTAAQYEKGLDNALPGG 248

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
            +T+ +L   +S+ L +D + + GL  G +P    +  + ++       L+   + +   
Sbjct: 249 ENTVKVLTAHKSKGLEWDVVAVPGLVTGTFPSGQGREKWTAQGKVLPHGLRGDAETLPDV 308

Query: 685 AHDFEMANGT 694
           A         
Sbjct: 309 ASWDARGLKA 318



 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/501 (10%), Positives = 112/501 (22%), Gaps = 56/501 (11%)

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
           V    A      H      + +EE +   V         +     +  ++    G     
Sbjct: 308 VASWDARGLKAFHEAMKDHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSDFL 367

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                              +             ++     +       A      + +  
Sbjct: 368 TALYEHCAAGHGEIEVWADEPAEDEENPALHRATADEVWPLPLDDAALARRRSAAETVLA 427

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            +DG  V+     S+               D  +               + + +    + 
Sbjct: 428 HLDGLAVREDGPPSAPATYEDPDWPPPPEDDEGLPEEAEPDRAGDPAHWDSWTTERPAAA 487

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
               TA +                            +P  A    Q              
Sbjct: 488 REAATAPESPAA------------------PQAGPTVPHQAPPPEQPPGTAPVPAPARLT 529

Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
            +  +    W R LD  T +    R            + + S++  L  DP    A+ + 
Sbjct: 530 PEEARTVASWDRDLDALTGELLRARESVTEVPLPA--SLTASQLLSLAADPDGF-AQELA 586

Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
           +    P          RGT FH  +    +                      + E    H
Sbjct: 587 RPMPRPPQ----PAARRGTRFHAWVEARFEPLTLPLLEPEELP-------GGDAEIADDH 635

Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
                      +  +F   E   ++      V  P ++++      + G  D +     G
Sbjct: 636 -------DLEFLKDAFERTEYARRTPFR---VEAPFQLSLAGR--VVRGRIDAVYKEGDG 683

Query: 912 ---FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
                +I D+KT      +        QL+L   A        +    V    ++ ++  
Sbjct: 684 DTATYEIVDWKTNRAATADP------LQLALYRIAWAEQ--QHVPPASVT-AAFLYVRTG 734

Query: 969 FKIDCITNDKKKYSADELSEK 989
             +       +      L  +
Sbjct: 735 EVVRPEGLPDRAALEKLLLAE 755


>gi|284031863|ref|YP_003381794.1| exodeoxyribonuclease V subunit beta [Kribbella flavida DSM 17836]
 gi|283811156|gb|ADB32995.1| exodeoxyribonuclease V, beta subunit [Kribbella flavida DSM 17836]
          Length = 1098

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 93/871 (10%), Positives = 219/871 (25%), Gaps = 72/871 (8%)

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
             L  +    + D+  +L+  S    PI+ A A+ LA  +              E      
Sbjct: 147  DLTDLVAEVVDDLYLNLFAGSAEPPPITRATALELALKVVGN----PHTRLVPEKYAEAS 202

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR---AEAEHLMKGTKGPI 230
             E   + +  A   L    +    RL  L     +      +    A A   M+     +
Sbjct: 203  PEGVRVEFAKAV--LAEVERR-KRRLGVLGYDDLLTRLAVALEDPTAPARRRMQRRWSVV 259

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            ++     + P   +++    N  +  +++      I       I    T   ++    + 
Sbjct: 260  MVDEFQDTDPVQWKVIDAAFNGHSTLVLIGDPKQAIYAFRGGDIATYLTAAATAGQRRTL 319

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
               +   + L           RLG+    ++        S L     D      +  +  
Sbjct: 320  GTNWRSDQPLVDCLQVVLGGARLGHEDIVVHPVDAHHQGSRLAGAPCDAPFRLRVALRDQ 379

Query: 351  NIQKCFSDVALIEADNE--REEAISIAIALRMSLDENKKK-----SALITADRNLARRVK 403
                   ++ + E  +   R+ A  I   L        +       A+I      AR  +
Sbjct: 380  FGSAARKNIPMDELRDHITRDLAADIGQLLAAGATYAGRPLRAGDIAVIVEAHKDARACR 439

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L + GI    S  + + ++  +     LL A  + +    +                +
Sbjct: 440  EALAQAGIPAVYSGDLDIFSSQAAQDWLCLLEAFEQPHRSGLVRAAATTMFFGETAASLH 499

Query: 464  -------------LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
                         L    + L    +     +  +  +   VL     +++ T + H   
Sbjct: 500  AGGEELTDRIGQTLRAWADHLRAKGVAAVFEAAQLKGMADRVLAWRGGERDLTDLAHLAE 559

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL---- 566
             L E        L   +                T    S     ++    +         
Sbjct: 560  LLHETAHREGFGLPALLDWLRQECTGKGRTTERTRRLDSDVAAVQIMTVWVSKGLQYPVV 619

Query: 567  -DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                    +++ E+E         + ++ G   +A            + G+ ++      
Sbjct: 620  YLPFGFNRHIYDEDELLLFHEDGVRSLDIGGRKRAEYRANEKRWRAEVAGDDIRLTYVAL 679

Query: 626  STLFILGTLESRLLNFDTL-------------ILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            +       +     ++D +                 + + +   ++ +   +        
Sbjct: 680  TRAQ-SQVVAWWAPSWDEVNGGISRLLRGRKQGDPVVPDQLDRPSSDEEVLVWLRRWQQA 738

Query: 673  NLKTAEKYIGQAAHD---------FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
                 E+       +           +A  +R +  T      +      R  ++     
Sbjct: 739  GGPVVEQSAIAEHVEPVAEQLPGGLRVATFSREVDLTWRRTSYSG---LVRDAEQQSAGV 795

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
             ++  ++                     P      P              E      D +
Sbjct: 796  ASEHEESQLADESVDPVPMPAAAAPDALPSPMEGFPVGATFGSLVHAVLEEADPHAADLH 855

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTL-FHNIITELIKKRINKNTPEINHLMKQIIDSH 842
            A  A RI +          PD      L  H      +   +          ++++    
Sbjct: 856  AELAGRIREQLPFWRVDATPDALATAMLPMHATPLGPLVPGLTLRDLGRGDRLRELDFEI 915

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTG 900
                        +       +  + L  ++ + +  ++  +  P    +    +   LTG
Sbjct: 916  PLAGGDRAAPREVRLAELAPLLRAHLPADDPLLAYADR--LEQPL---LGGQSLRGYLTG 970

Query: 901  FADRIDLLKSG---FVDITDYKTGDNPKKET 928
              D +  +  G      + DYKT      + 
Sbjct: 971  SIDVVLRVPDGGSHRFVVVDYKTNRLGDPDQ 1001


>gi|303248300|ref|ZP_07334562.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
 gi|302490325|gb|EFL50237.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
          Length = 1078

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 89/849 (10%), Positives = 198/849 (23%), Gaps = 106/849 (12%)

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
                            ++ L+  +  A+   +   L  +   I+      +         
Sbjct: 245  REAAQADAPPQSAYAGKATLADCMLKASRDAVTPELERLYAEIQAAHAACDRELPALRAA 304

Query: 177  --YGMWWLLAADFLKIASKYWTER--LVELNASSPVGYQIALMRAEAEHLMKGTKG--PI 230
                 +  LA   L+    Y T+   L        V  ++       +   +   G   I
Sbjct: 305  MGLAPFVALAGALLEDYPTYLTQMRKLPHSQWPRLVAGRLGGDMGVPDAWCRLGAGLAHI 364

Query: 231  IIAGSTGSIPATARLMS--TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            +I     +     R++    +     G  +    D       W        +   ++   
Sbjct: 365  LIDEFQDTARDQWRVLRLLALECLARGGSLYLVGDVKQAIYGWRGGDAALFDEAPADDEL 424

Query: 289  STHPQYSLAKLLDF--------LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
            S   +    + L          +         L +        + ++  +          
Sbjct: 425  SRVTEGVTRQTLPVNWRSAPVVVGANNRFFAPLADPETADRVAAALLGPNLASAAPQLAA 484

Query: 341  NTDIL----ENKIPNIQKCFSDVALIEA-----DNEREEAISIAIALRMSLDENKKK--- 388
                        +P+          I A       E EEA   A+   ++ +   +    
Sbjct: 485  ALGQAFTDARQSLPDDYHGPQGHVRISALTGTSAGEYEEAAREALVRLLADELVPRHGPG 544

Query: 389  -SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
              A++T     A RV   L R GI +     + L+       L +LL  +    D ++  
Sbjct: 545  GVAVLTRSNPQAGRVADWLIRAGIPVVTENSLLLAEHPLIRQLAALLAFLDFPPDSLSFF 604

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
              V                    +  +  RG                             
Sbjct: 605  AFVSGRELFGDIAGIGRDELAEWVTGLPHRG----------------------------- 635

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                       L++            L+     +        +          L+    D
Sbjct: 636  ----------SLSLAFRARWPDVWDRLIRPYQRQTGLAAPYDLLREIVAGYRLLERRPGD 685

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
            E      L      ++                 +   ++D    L   E V P+ E    
Sbjct: 686  EAFIRRFLEIAHLAESKGYG-------------SIAAFLDFWRELGSDEKV-PQPENIDA 731

Query: 628  LFILGTLESRLLNFDTLILG--------GLNEGVWPKNTAKNPFLSR-VMQSDLNLKTAE 678
            + ++   +++ L F  +++         G  + V                    +     
Sbjct: 732  VRVMTIHKAKGLQFPAVVVPFHHFTGKAGQADLVVGHVEEGEVLAPDMPGLGPDHALRRA 791

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW-----LQRLLVLGGTDFFDNLKK 733
            + + +  H   +A     +     +         SR+     L  L    G D       
Sbjct: 792  RELAEQLHLLYVAWTRPEVELHAFVPGYGKLREDSRYPLPKALAILFEAFGHDPAGGGPI 851

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
            R     D  +           + P      E   R  +  E+  +      +   ++ + 
Sbjct: 852  RLGSLPDAPQAAARACPVAAPEAPADGETAEGGRRAATVPEVIAVDAPMAWLPRLKVYRN 911

Query: 794  DFIPHFKK-DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                           RG L H       +  +  +  +     ++   +    E L   +
Sbjct: 912  VARDIRDSLRFSEKRRGELAHLAAETFAR--LGHDPADPTPAARRAAATALGGERLDAGL 969

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
                   F  +        +  ++ + +  +     M  +          D +       
Sbjct: 970  RDRLAGEFTDMLVWLAGLPDCREA-LAQGLLEREL-MDADGA----RHRPDLLFAGP-KH 1022

Query: 913  VDITDYKTG 921
              + D+KTG
Sbjct: 1023 TLVLDFKTG 1031


>gi|302536759|ref|ZP_07289101.1| ATP-dependent DNA helicase [Streptomyces sp. C]
 gi|302445654|gb|EFL17470.1| ATP-dependent DNA helicase [Streptomyces sp. C]
          Length = 235

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 41/186 (22%), Gaps = 12/186 (6%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TLVE            A + I   +++A  ELR       G      P   +        
Sbjct: 62  TLVEAAAARVEAGTDPARILILTFSRKAAVELRDRAALRLGG--ARAPQATTFHSFCYGL 119

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
             A        +P        L       +    L +  + L          +       
Sbjct: 120 VRAHQDHELFADPL------RLLSGPEQDVMVRTLLEGQRRLRSIRWPDDLRAALTTRGF 173

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
           A  +  ++          E L    +      W  AA FL          L    +    
Sbjct: 174 ADEVRAVLARARELGLGPEALAGFADRIGRPDWKAAAAFLSEYLDV----LDLQGSLDYA 229

Query: 209 GYQIAL 214
                 
Sbjct: 230 ELLHRA 235


>gi|303229716|ref|ZP_07316502.1| ATP-dependent nuclease subunit A [Veillonella atypica
            ACS-134-V-Col7a]
 gi|302515613|gb|EFL57569.1| ATP-dependent nuclease subunit A [Veillonella atypica
            ACS-134-V-Col7a]
          Length = 1273

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 21/160 (13%)

Query: 798  HFKKDPDRTDRGTLFHNIITEL-IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
               +       GTL H  +  L +KK   K+  ++   ++       E+ +L     +  
Sbjct: 1102 AADEVVTGAQWGTLMHEAMQWLPVKKYTQKSMTDMLDSLQAEGKFSDEERSLLSDRSLYG 1161

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH----------LTGFADRID 906
                      F     +   + +++   +P  M  +   ++          L G  D + 
Sbjct: 1162 F---------FNSDLGQRLIASKRVERELPFSMLFDGNRVYPDVENGERLFLQGIIDTVF 1212

Query: 907  LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            + +     + DYKT      +   +    Q+ L   AL+ 
Sbjct: 1213 V-EDDQWVLVDYKTDRVKSGDELIRRYKIQMDLYKEALER 1251


>gi|295112231|emb|CBL28981.1| Superfamily I DNA and RNA helicases [Synergistetes bacterium SGP1]
          Length = 682

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 66/705 (9%), Positives = 162/705 (22%), Gaps = 119/705 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +T    T +A  E+R     +    +              +K       ++ L     N
Sbjct: 56  EITAVTFTNKAAGEMRERVSALVPDGA--------------DKVWVSTFHAFGLRFLFRN 101

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            + +  L  L   +        + L  +    L ++  +        A ++D I  +   
Sbjct: 102 PEAVERLTGLRTGFAVLDRGDSRSLVGQIMERLGVNTKDTAP-----ASVLDAISRDWAA 156

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG-----YQIALMRAEAE 220
           W           G    L        +  +   L E NA           Q+     E  
Sbjct: 157 WA---------PGPREPLLEGLYLDIANEYRRALRERNAVDFDDLMVLPLQVLTQDRELR 207

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     +++            L+  +       ++    D       W         
Sbjct: 208 EREQARIRWLLVDEFQDVNRPQYLLLRNLVG--PDCLLNVVGDPDQSIYGWRGADIGMIL 265

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +                               +  +              +     
Sbjct: 266 NFERDFRGEEGHA--------------------DAKTIVLDENYRSTGNILAASNALIRN 305

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---SALITADRN 397
           N+  ++  +   +     V  + A+++ +EA  I   +      +       AL+     
Sbjct: 306 NSTRMKKDLRTSRGMGEKVYTLLANSDLQEADFITAEIARLKAHHGYDYGNIALLYRQNA 365

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
           ++R  + +    GI   I  G+          + +LL      ND  +     +  +   
Sbjct: 366 MSRLYEQKFLELGIPYRIVRGVAFYERREVRDVLALLKLALNPNDLTSFERAAEFAVKGM 425

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G         K   +  +   +                         V    +  +    
Sbjct: 426 GP--------KRREDWTSWLASGAVPTSPASDFWGAAAKGAWPVRGQVGAAAAEFAAHMA 477

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            L  +    I   +  ++     +                                    
Sbjct: 478 RLLAVSERGIGPAVDYVLNQMGYEELLRSKEP---------------------------- 509

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            E  +       ++         +     + +           + +  + + +L    ++
Sbjct: 510 -ESWEERYDNVMELRSVVPEGGLS-----EALAEAALFTDADRQDDSGNAVGLLTLHAAK 563

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L F  + L G+ E V+P + AK+                ++   +    +         
Sbjct: 564 GLEFPVVFLVGMEEDVFPSSRAKDQ--------------PDQLEEERRLCYVGMTRAEER 609

Query: 698 IYTRSLRENNIPTIA-----SRWLQRLLVLGGTDFFDNLKKRGQC 737
           +Y  + R   +         SR++  +            + RG  
Sbjct: 610 LYLTAARSRRLYGTTLSKGFSRFIYEVPEQYREIDDRAGEGRGWD 654


>gi|226947150|ref|YP_002802223.1| exodeoxyribonuclease V subunit beta [Azotobacter vinelandii DJ]
 gi|226722077|gb|ACO81248.1| exodeoxyribonuclease V, beta subunit [Azotobacter vinelandii DJ]
          Length = 1226

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 78/798 (9%), Positives = 190/798 (23%), Gaps = 53/798 (6%)

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
               +  +L    +       +      AR    W  KL         +  L    +    
Sbjct: 239  WNAWADELEALLDAAVQAKRVDGRKIQARYYRPWCEKLRAWAVGDGTDLDLGSGFARLTP 298

Query: 146  IWLAKNLADIIDI---IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
              LA+           +E        L  L           AA ++ +  +    R  E+
Sbjct: 299  EGLAEAWKGESPRHPALEAMRALPARLRTLSGPDEPARRHAAA-WVSLRFEQEKRRRAEM 357

Query: 203  NASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMS---TVANHPNG 255
                 +    A +R +       L++G     +I     + P   R+      +A++   
Sbjct: 358  GFDDMLSRLDAALRGDNGGRLAELIRGQFPVALIDEFQDTDPLQYRIFDRIYAIASNRAD 417

Query: 256  AIVLPGLDCHIPTAIWNTIT--------EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
              +    D       +            + +     +  T     Q  ++ +     +  
Sbjct: 418  CGLFLIGDPKQAIYAFRGADIHTYLRARQATEGRHYNLETNFRSSQALVSAVNRVFRLAE 477

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                  G         + +           ++           N+     +  L      
Sbjct: 478  RREAGHGAFLFRDGTTNPLPFLEVGAQGREEVWQIGGNAQPALNLWHLEDEAPLPGGAYR 537

Query: 368  REEAISIAIALRMSLDENKK-----------------KSALITADRNLARRVKLELT-RF 409
             + A   A  +   L+  ++                   A++  D   A  ++ +L  R 
Sbjct: 538  AQMAERAASEIVRLLNLGQRGGAGFVRDGRLQPLRPSDIAILVRDFKEAEAIRGQLAARG 597

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH---PLAKFGFPEKYLSR 466
              ++ +S    +  +  +  L   L A  + +    +   +      LA     E     
Sbjct: 598  VRSVYLSDKDSVFASPEARDLLLWLRACAEPDVDRPLRAALASRSLGLALAELEELNRDE 657

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                  ++  RG +  +    +  ++   +     +           E      + L + 
Sbjct: 658  RIWERRVMQFRGYRQRWQRQGVLPMLHQLL--HDFDLPQRLMARPDGERALTNLLHLAEL 715

Query: 527  ILQCITPLVTYKTNKNSTCGNLS--ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
            + +    L   +         L+  I    +  +    +  L     +      E     
Sbjct: 716  LQRAAAGLDGEQALIRHLSELLAGEIQVAEEQVLRLESDAALVRVVTIHKSKGLEYPLVF 775

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
                               +       L  GE    + ++      L  L   L      
Sbjct: 776  LPFVCAFRAVEGGRPLWVYDGERRRLVLTPGEDEVARADRERLGEELRLLYVALTRARHA 835

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
               G+ +             S +          E+    A     +       +      
Sbjct: 836  CWLGVADLCVGNARKSRLHDSALGYLLGGAVPLERSAALADWLAPLDVAGESAVLEAPEA 895

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL-DWTRKLDYTTKQPHYKRPKPFPPL 763
                     R++++ +      +    +   + +       L     +      +     
Sbjct: 896  SGE------RFVEQAVARSKPQWRTPARSAAEHWWIASYSALRIGAGEERLADSQIPASR 949

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
                   S +  K   ++  +V+    L+    P   + P   + GT  H ++    ++ 
Sbjct: 950  FDDAAPDSPAAQKVADDERESVFVP--LRAGETPTLHRFPRGPNPGTFLHGLLEMAGREG 1007

Query: 824  INKNTPEINHLMKQIIDS 841
                  E   L + I   
Sbjct: 1008 FAALAAEPARLRELIARR 1025


>gi|238018401|ref|ZP_04598827.1| hypothetical protein VEIDISOL_00227 [Veillonella dispar ATCC 17748]
 gi|237864872|gb|EEP66162.1| hypothetical protein VEIDISOL_00227 [Veillonella dispar ATCC 17748]
          Length = 1266

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 19/165 (11%)

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
            K   +   +        GTL H  +  L      +++      + + +D+   K      
Sbjct: 1088 KPQALQSEEDVLTGAQWGTLMHEAMQWLPLAEYTQDS------LTKELDALVTKGTFTEE 1141

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH----------LTGF 901
               +       +   F     K   + ++I   +P  M  E   ++          L G 
Sbjct: 1142 ERNLLSD--TSLYKFFNSDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGENLFLQGI 1199

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             D     + G   + DYKT      E   K    Q+ L   AL+ 
Sbjct: 1200 IDTAFE-EDGEWVLVDYKTDRVKSGEDLIKRYKIQMDLYKEALQR 1243


>gi|303231758|ref|ZP_07318481.1| ATP-dependent nuclease subunit A [Veillonella atypica ACS-049-V-Sch6]
 gi|302513707|gb|EFL55726.1| ATP-dependent nuclease subunit A [Veillonella atypica ACS-049-V-Sch6]
          Length = 1273

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 21/160 (13%)

Query: 798  HFKKDPDRTDRGTLFHNIITEL-IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
              ++       GTL H  +  L +KK   ++  ++   ++       E+ +L     +  
Sbjct: 1102 DAEEIVTGAQWGTLMHEAMQWLPVKKYTQQSMTDMLDSLQAEGKFSDEERSLLSDRSLYG 1161

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH----------LTGFADRID 906
                      F     +   + +++   +P  M  +   ++          L G  D + 
Sbjct: 1162 F---------FNSDLGQRLIASKRVERELPFSMLFDGNRVYPDVENGERLFLQGIIDTVF 1212

Query: 907  LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            + +     + DYKT      +   +    Q+ L   AL+ 
Sbjct: 1213 V-EDDQWVLVDYKTDRVKSGDELIRRYKIQMDLYKEALER 1251


>gi|294053735|ref|YP_003547393.1| Exodeoxyribonuclease V [Coraliomargarita akajimensis DSM 45221]
 gi|293613068|gb|ADE53223.1| Exodeoxyribonuclease V [Coraliomargarita akajimensis DSM 45221]
          Length = 1201

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 85/806 (10%), Positives = 179/806 (22%), Gaps = 97/806 (12%)

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPA 241
            F     + +     E    +       L RA       +  +       ++     +   
Sbjct: 331  FDSWFIESFQHLKAERGFMTYDDMIFDLDRALSRSGRLKRQLCERYRAALVDEFQDTDGR 390

Query: 242  TARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTIT----------------EKSTNITS 283
               +   +   +  +G       D       +                          + 
Sbjct: 391  QYSIFRKLFAESTEHGRYFAMIGDPKQSIYGFRGADISAYLKARNAAHYRYTLPMNYRSE 450

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT------S 337
             +   +T+  +    L   L    ++      V      +  +     + PD        
Sbjct: 451  KSVVDATNRFFQGGDLGKVLGSNEDESILFDTVDANDTPKRRLCFAGKVQPDRLYERALP 510

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-RMSLDENKKKSALITADR 396
               +  +      ++     DV  +   +E       +  +            A++    
Sbjct: 511  RPIDERVKSAHQSSVTAMAEDVERLLVLSEEGRVYFESTEMGLSRERVRASDIAVLVNTN 570

Query: 397  NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
              A  V+ EL + GI    S    +  T  +      L A         I  L+   L  
Sbjct: 571  REAAEVQDELHKRGIVAVRSKTGSILETAEAQNFLYFLMACLDP-SERGINLLLISSLFA 629

Query: 457  FGFPEKYLSRA-KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                E  L  + +        R     +      S +  R   ++        ++    E
Sbjct: 630  KNDAELRLLSSSERRAIYELFRLLGKQWRDGAAVSRIWMRFVDERFLREHLLQRTDGERE 689

Query: 516  D------KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD--WTKLTVTCLQNVCLD 567
                    ELA  L          L            N S+SD    +L         + 
Sbjct: 690  LTNYMHIAELAQELERVERLSPDRLRDRLWETIQNGSNSSLSDDYLVRLESDAAAVTIMT 749

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
             H      +      TL                   +  D                 S  
Sbjct: 750  MHSSKGLEFPIVFLPTLWQRGINQRSKREPQLKTDPKDPDCFVGFEVDAAQVVASSSSEN 809

Query: 628  LFILGTLESRLLNFDTLI-LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            L +     +R ++F     + GL +     N A   F   +          E        
Sbjct: 810  LRLGYVAMTRAVHFSVYYNVRGLPKQHGASNQADGWFDQWLCDQRDGRYPNEAEED---- 865

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                      +  T +     +             +           +   Y    R   
Sbjct: 866  FLGELRCVSPVELTDTTSPEEVH------------VHELTRAIPTSYQITSYSALARSEH 913

Query: 747  YTTKQPHYKR----PKPFPPLEAQPRTYSFSEIK-QLINDPYAVYARRILKLDFIPHFKK 801
                     R      P     ++      S ++  L+ + +    R    +  +     
Sbjct: 914  KEQDFDPSTRSGMEDAPREDRLSRSLAGDLSSVESDLLLEAFPGGVRTGTCIHEVLERCD 973

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH--------------FEKEN 847
                     L H +I+       + +  E    + +++ +                 K +
Sbjct: 974  FTQPETWQRLAHAVISRHFPDGGDDSLEERVSQLVELLTTLTAQVRSSSAGLNIDLAKLS 1033

Query: 848  LPPHIDIIW---------RHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGIH 897
                I  +                +  ++ E          ++      A+     I  +
Sbjct: 1034 PSACIPEMEFYFPVEQVDLAGLEAVLRTWAE----------RVGFEYNSAEYRARDIDGY 1083

Query: 898  LTGFADRIDLLKSGFVDITDYKTGDN 923
            LTG  D +   ++    I D+KT   
Sbjct: 1084 LTGSVD-LFFTQAQRFFILDWKTNRP 1108


>gi|158312789|ref|YP_001505297.1| UvrD/REP helicase [Frankia sp. EAN1pec]
 gi|158108194|gb|ABW10391.1| UvrD/REP helicase [Frankia sp. EAN1pec]
          Length = 759

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/540 (10%), Positives = 126/540 (23%), Gaps = 21/540 (3%)

Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISP--ANAIWLAKNLADIIDIIETE---EKKW 166
           L +L   W +     +  L       +  +   A        L D+   +E         
Sbjct: 115 LRQLSYFWPSVAGTALPRLEKSRIPLMAKAANRARLRPDRAELRDLTSEVEWAKATMVAP 174

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH----- 221
            D   L           A D +    + + E   E          +       EH     
Sbjct: 175 ADYVRLAAAHGRET-SFAPDVVARLYEAYEEVKSEAGVLDFDDLLLLTAAVVEEHGWVAT 233

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
            ++      ++       P   R++       +   V+   +  I +    +        
Sbjct: 234 ELRARYRHFVVDEYQDVNPLQQRVLDAWLGDRDSLCVVGDANQTIYSFTGASARHLVEFP 293

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                                + +    +      + +  G S V +   +P        
Sbjct: 294 RRFPAATVVRLVRDYRSTPQVVALANRLLDGAARPAPDTRGASAVQAGPGVPGVPGGAEG 353

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLA 399
                  +         V  +E+D+E EEA ++A  +R  L       + A++      +
Sbjct: 354 RSAAGRLVAMRPSGPEPV-WLESDSEPEEAAAVARRIRGLLGTGVPASEIAVLYRINAQS 412

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
              +  L R  I   +  G         +    +L A  +  +          P      
Sbjct: 413 EAYETALGRAEIPYLVRGGEKFFERPEVTGAVRMLRAALRSAETDR-------PGGLADV 465

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
               LS               +     +L +L       +                ++  
Sbjct: 466 VADVLSALGWRPGAPPAGPGADRERWENLAALHRLAADLEAREPEADLAAFAADLAERAA 525

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
                      +  L   K  +      + + D T   V    +  L E R+L  +    
Sbjct: 526 HQHTPTVQGVTLASLHAAKGLEWDAVFLVGLVDGTLPIVHAQTDEQLAEERRLLYVGVTR 585

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
               L+  ++     G+        ++D   R            +  +            
Sbjct: 586 ARVHLTLSWALARAEGARRSRRPSRFLDEPRRAAAAFRRGSSAARPGSARAEPGTAGNGR 645


>gi|323452491|gb|EGB08365.1| hypothetical protein AURANDRAFT_64201 [Aureococcus anophagefferens]
          Length = 5266

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 71/728 (9%), Positives = 165/728 (22%), Gaps = 29/728 (3%)

Query: 158  IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217
              E E             +       AA+  ++          E  A  P       +RA
Sbjct: 1688 RAEGERVLESKWAEQAEREAAWTAASAANLEQLRVAEEEAVTTEQEAPLPAEVDTRSLRA 1747

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
            E +   +          S   +       + +                +      ++  +
Sbjct: 1748 EGQRAEREAAWTAASVASLERVRVAEAEAARLKAEQEALFAGEEERRALRAEGMRSLEGE 1807

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
             +        ++     SL ++                +      R  + ++     +  
Sbjct: 1808 WSEQAEREAAWTAASVASLERVRVAEAEAARLKAEQETLFAGEEERRALRAEGMRSLEGQ 1867

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNER----EEAISIAIALRMSLDENKKKSALIT 393
                 +               V + EA+  R    +EA+      R +L         + 
Sbjct: 1868 WTEQAEREAAWTAASVASLERVRVAEAEAARLKAEQEALFAGEEERRALRAEG-----MR 1922

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL--VK 451
            +              +      S          ++ L +   A+F   +         ++
Sbjct: 1923 SLEGEWTEQAEREAAWTAASVASLERVRVAEAEAARLKAEQEALFAGEEERRALRAEGMR 1982

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
                ++    +  +    A      R      +   LK+      A ++    +     R
Sbjct: 1983 SLEGEWSEQAEREAAWTAASVASLERVRVAEAEAARLKAEQEALFAGEEERRALRAEGMR 2042

Query: 512  LSEEDK-ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
              E +  E A          +  L   +  +       +  +         + +  +  R
Sbjct: 2043 SLEGEWSEQAEREAAWTAASVASLERVRVAEAEAARLKAEQEALFAGEEERRALRAEGMR 2102

Query: 571  KLPNLWFEEEGKTLSSLFS--KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
             L   W E+  +  +   +    +E     +A A         L  GE  +  +      
Sbjct: 2103 SLEGQWTEQAEREAAWTAASVASLERVRVAEAEAARLKAEQEALFAGEEERRALRAEGMR 2162

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             + G    +             E  W   +  +    RV +++     AE+    A  + 
Sbjct: 2163 SLEGQWTEQ----------AEREAAWTAASVASLERVRVAEAEAARLKAEQEALFAGEEE 2212

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
              A     +   RSL                  +   +     +            L   
Sbjct: 2213 RRALRAEGM---RSLEGEWSEQAEREAAWTAASVASLERVRVAEAEAARLKAEQEALFAG 2269

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
             ++    R +    LE Q                 A   R  +        K + +    
Sbjct: 2270 EEERRALRAEGMRSLEGQWTEQ-AEREAAWTAASVASLERVRVAEAEAARLKAEQEALFA 2328

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            G      +     + +     E          +          +             +F 
Sbjct: 2329 GEEERRALRAEGMRSLEGEWSEQAEREAAWTAASVASL-ERVRVAEAEAARLKAEQEAFF 2387

Query: 869  EHEEKIQS 876
              EE+ ++
Sbjct: 2388 AGEEERRA 2395



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/634 (9%), Positives = 145/634 (22%), Gaps = 29/634 (4%)

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
            +P  +                 ++     SL ++                +      R  
Sbjct: 1736 LPAEVDTRSLRAEGQRAEREAAWTAASVASLERVRVAEAEAARLKAEQEALFAGEEERRA 1795

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER----EEAISIAIALRMS 381
            + ++     +       +               V + EA+  R    +E +      R +
Sbjct: 1796 LRAEGMRSLEGEWSEQAEREAAWTAASVASLERVRVAEAEAARLKAEQETLFAGEEERRA 1855

Query: 382  LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
            L         + +              +      S          ++ L +   A+F   
Sbjct: 1856 LRAEG-----MRSLEGQWTEQAEREAAWTAASVASLERVRVAEAEAARLKAEQEALFAGE 1910

Query: 442  DFMAIATL--VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
            +         ++    ++    +  +    A      R      +   LK+      A +
Sbjct: 1911 EERRALRAEGMRSLEGEWTEQAEREAAWTAASVASLERVRVAEAEAARLKAEQEALFAGE 1970

Query: 500  KNNTHVPHWQSRLSEEDK-ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
            +    +     R  E +  E A          +  L   +  +       +  +      
Sbjct: 1971 EERRALRAEGMRSLEGEWSEQAEREAAWTAASVASLERVRVAEAEAARLKAEQEALFAGE 2030

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS--KIIETGSCIKANAIEWIDIITRLIDGE 616
               + +  +  R L   W E+  +  +   +    +E     +A A         L  GE
Sbjct: 2031 EERRALRAEGMRSLEGEWSEQAEREAAWTAASVASLERVRVAEAEAARLKAEQEALFAGE 2090

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
              +  +       + G    +             E  W   +  +    RV +++     
Sbjct: 2091 EERRALRAEGMRSLEGQWTEQ----------AEREAAWTAASVASLERVRVAEAEAARLK 2140

Query: 677  AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
            AE+    A  +   A     +   RSL                  +   +     +    
Sbjct: 2141 AEQEALFAGEEERRALRAEGM---RSLEGQWTEQAEREAAWTAASVASLERVRVAEAEAA 2197

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                    L    ++    R +    LE +                 A   R  +     
Sbjct: 2198 RLKAEQEALFAGEEERRALRAEGMRSLEGEWSEQ-AEREAAWTAASVASLERVRVAEAEA 2256

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
               K + +    G      +     + +     E          +          +    
Sbjct: 2257 ARLKAEQEALFAGEEERRALRAEGMRSLEGQWTEQAEREAAWTAASVASL-ERVRVAEAE 2315

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                     +    EE+ ++   +   ++  + +
Sbjct: 2316 AARLKAEQEALFAGEEERRALRAEGMRSLEGEWS 2349


>gi|219556815|ref|ZP_03535891.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T17]
 gi|289568920|ref|ZP_06449147.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T17]
 gi|289542674|gb|EFD46322.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T17]
          Length = 422

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/406 (14%), Positives = 107/406 (26%), Gaps = 66/406 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T +A  E+R   + + G+K+  +  + +              L   LN   S
Sbjct: 68  GQILAITFTNKAAAEMRERVVGLVGEKARYM-WVSTFHSTCVRILRNQAALIEGLNSNFS 126

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+ +    L   IK   P                   LA+ I  ++ E  
Sbjct: 127 IYDADDS-RRLLQMVGRDLGLDIKRYSPRL-----------------LANAISNLKNELI 168

Query: 165 KW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----- 218
              + L  L  +         A  +      +  RL   NA          +        
Sbjct: 169 DPHQALAGLTEDSDD-----LARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQ 223

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH------PNGAIVLPGLDCHIPTAIWN 272
                +     +++     +  A   L+  +         P G + +   D       + 
Sbjct: 224 IAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCV-VGDADQSIYAFR 282

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             T ++            +P      L       +  +    +V     GR         
Sbjct: 283 GATIRNIEDFE-----RDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRR-------- 329

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKS 389
                        E ++         +    ADNE +EA  +A    AL    +      
Sbjct: 330 -------------EKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDV 376

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
           A+     N +R ++  L R GI   +  G+          + + L 
Sbjct: 377 AVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLR 422


>gi|207724952|ref|YP_002255349.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           MolK2]
 gi|206590179|emb|CAQ37140.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           MolK2]
          Length = 710

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 73/741 (9%), Positives = 172/741 (23%), Gaps = 125/741 (16%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE----FIEITGKKSTILPIIKSLGDV 84
           TL     +   +      + +   ++RA  EL S             +            
Sbjct: 56  TLGWRVAHLVAHGADPQRILLLTFSRRAASELSSRAGHLLARAMQGNTG----------- 104

Query: 85  VEEKFTADLLLSYNLNPPVS----NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
              +  A       L    +      + L E A  I +  +       D      +    
Sbjct: 105 --TRSAAGTTYQTALPWAGTFHGIGARLLREYAERIGLAPDFTIHDRSDSADLLNVVRHE 162

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
              +       L      I +     E       +++  W  +    L+     + E   
Sbjct: 163 LNLSTKARRFPLKQTCLAIYSRAINAESPLDAVLKQHFPWCAMWQAQLRTLFDAYVEAKQ 222

Query: 201 ELNASSP----VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             +        + +   +  A     +      I++     +    A ++  +   P+G 
Sbjct: 223 AQHVLDYDDLLLYWHAMVSDAGLATEIGARFDHILVDEYQDTNRLQATILRAL--RPDGR 280

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            +    D       +   T ++      + T           L       +  +     V
Sbjct: 281 GLTVVGDDAQSIYAFRAATVRNILDFPRHFTRP----ARTVLLERNYRSTQPILDASNGV 336

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                 R      +                              L+   +E E+A  +A 
Sbjct: 337 MRFATERFAKTLWTDRASTHRP---------------------RLVSVRDEAEQARCVAE 375

Query: 377 ALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +    +     K  A++    + +  +++ELTR  I      G+      H   + S+L
Sbjct: 376 QVLQHREGGLALKSQAVLFRTASHSAPLEIELTRRNIPFVKYGGLKFLEASHVKDVLSVL 435

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                  + +A   +++                                      + VLD
Sbjct: 436 RWAENPRNRIAGFRVIQ----------------------------LLPGAGPATAARVLD 467

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            +A   +             E           ++  +  L T K +        ++  W 
Sbjct: 468 AMAEAADPIAALLA-----HEPPARLAGDWAALMTLMATLRTPKHDAAWAGELGAVGAWY 522

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
              +  L +        L  L        +++ ++      + +  +  E        + 
Sbjct: 523 APHLERLHDDAAVRQGDLDQL------ARMAATYASRERFLTEMTLDPPE--------LT 568

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
            +           L +     S+   +  + L    +G  P              +DL  
Sbjct: 569 SDESGAPYRDEDYLILSTIHSSKGQEWKAVYLLNAVDGCMP--------------ADLGA 614

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            + ++   +    +      R  +            +  R+        G       + R
Sbjct: 615 GSHDELEEERRLLYVAMTRARDHL---------DILVPQRFYVTQQTPNGDRHIYASRTR 665

Query: 735 GQCYLDWTRKLDYTTKQPHYK 755
                      +     P   
Sbjct: 666 FIP-PALLPLFEACAWPPPEP 685


>gi|222034534|emb|CAP77276.1| exodeoxyribonuclease V beta chain [Escherichia coli LF82]
 gi|312947371|gb|ADR28198.1| exonuclease V subunit beta [Escherichia coli O83:H1 str. NRG 857C]
          Length = 1180

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 108/941 (11%), Positives = 233/941 (24%), Gaps = 162/941 (17%)

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            + + I+    +   +  L           A   ++        R  EL     +    + 
Sbjct: 309  LFEAIDQLLAEPLSIRDLVIT-------RALAEIRETVAREKRRRGELGFDDMLSRLDSA 361

Query: 215  MRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
            +R+E        ++      +I     + P   R+   + +H     +L   D       
Sbjct: 362  LRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYA 421

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEMYGRSMVISK 329
            +      +     S      H  Y+L         +     K      +    R +    
Sbjct: 422  FRGADIFTYMKARS----EVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIP 477

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
                     +R     E +           +    D +   A   A  +R  L   ++  
Sbjct: 478  VKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGE 537

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
            AL+                     +     P+  +  S ++ S   A           TL
Sbjct: 538  ALLM--------------------NGDDARPVRASDISVLVRSRQEAAQVR----DALTL 573

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL---DRIATQKNNTHVP 506
            ++ P       +      +    L  L+          L+S +      +      T   
Sbjct: 574  LEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
               +  +  ++      +      +  L    + ++     L+ +   +     L    L
Sbjct: 634  DEHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARSIAENLLATAGGERRLTDILHISEL 693

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
             +             + LS    +     S  +        +                  
Sbjct: 694  LQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHL------------------ 735

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-------NLKTAEK 679
             + I+   +S+ L +  + L  +           +   S     DL       +L  AE+
Sbjct: 736  -VQIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRHSFEAVLDLNAAPESVDLAEAER 794

Query: 680  YIGQAAHDFEMANGTRHLI------YTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLK 732
                    +     +            R   +    T +    L RLL  G       L+
Sbjct: 795  LAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLR 854

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND-----PYAVYA 787
               +   D     D   +       +P+   +A     +   +++L  D      Y+   
Sbjct: 855  TCIEALCD----DDIAWQTAQIGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQ 910

Query: 788  RRILKLDFIPHFKKDPDRTDR--------------------GTLFHNIITEL-------- 819
            +R   +      + D D                        GT  H++  +L        
Sbjct: 911  QRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP 970

Query: 820  ----IKKRINKNTPEINHLMKQIIDSHFEKENLPPHI-------------DIIWRHLFHK 862
                 K  +    P+   ++ + I +  +       +                +  +   
Sbjct: 971  NWVQEKLELGGFEPQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEL 1030

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYKT 920
            +  S L+   +    +            +E + +   L GF D +   + G   + DYK+
Sbjct: 1031 LIASQLDALIRQFDPLS------AGCPPLEFMQVRGMLKGFIDLVFRHE-GRYYLLDYKS 1083

Query: 921  ---GDNPKK--------ETAQKLIDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRL 965
               G++                  D Q  L   AL      +I      R    + Y+ L
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYERHFGGVIYLFL 1143

Query: 966  KQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
            +   K                       LI+++  +  G  
Sbjct: 1144 RGVDKEHPQQGIYATRPN--------AGLIDLMDEMFAGMT 1176


>gi|300932818|ref|ZP_07148074.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens
           DSM 45100]
          Length = 690

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 67/638 (10%), Positives = 160/638 (25%), Gaps = 75/638 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T RA  ELR     +   +       ++       +                 
Sbjct: 54  RVLAVTFTNRAAAELRERLARMNVARV----QARTFHAAALRQLRYFWP----------- 98

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE---TE 162
                   R          D    L   +  S  +     +     LAD++  IE   + 
Sbjct: 99  --------RYAQGVEWAFLDSKFPLVARAARSQHVDTNKTM-----LADLLGEIEWSKSS 145

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKY----WTERLVELNASSPVGYQIALMRAE 218
               ED   + +       + A  F++I   Y     +     L+    + +  A +   
Sbjct: 146 LVVPEDYPKVMDSNRRDCPVEAEKFVRIFQAYEQLKISGERFLLDFDDLLLHMAAALETN 205

Query: 219 AEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
           A    +        ++       P   R++       +   V+   D +     +N  T 
Sbjct: 206 AGIAEEFRSQYRTFVVDEYQDVTPLQQRVLDAWLGERDDLTVV--GDANQTIYSFNGATP 263

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           +     +        P+ +  +L           +R    + ++   +  + +       
Sbjct: 264 EYLLDFTRKF-----PEATTVRL-----------QRDYRSTPQVVDLANKVIEKAKGRIA 307

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITA 394
                      + P            E  +E  EA ++A  +R  +       + A++  
Sbjct: 308 GSRLQLVGQRPEGPEP-------EFDEYSDEAAEAQAVADRIRNLIASGVPTSEIAILYR 360

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHS-----SILTSLLNAIFKLN--DFMAIA 447
               +   +  L+  GI   +  G              ++  +      +       A+A
Sbjct: 361 INAQSVLFENALSDLGIPYQVKNGEGFFQRREVGEGMQALFRAAERFDPQPGEVYDAALA 420

Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
            L    L               +L  +A   ++   D  +L    +  +  ++  +  P 
Sbjct: 421 ALHLVGLTANEPSGAQERERWQSLRALADLISEMVEDNPELTLRAIMLMLRERAESKNPP 480

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST--CGNLSISDWTKLTVTCLQNVC 565
             + ++      A  L    +  +  +        +    G+    +  +  +       
Sbjct: 481 RVAGVTLASIHSAKGLEWDAVFLVGLVEGTLPFHLALKGAGSEQAIEEERRLMYVGITRA 540

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
            +      +    E G+        +        A+A                     + 
Sbjct: 541 REHLFLSWSQARREGGRANRRRTRFLDGLIPTSGADATLASTTAVTGAPKHACTVCGARL 600

Query: 626 --STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                 I+G         D +++  L +       +K 
Sbjct: 601 STPEFKIIGRCGLHAPENDHVLVTELRQWRLNTAKSKG 638



 Score = 38.0 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 29/280 (10%), Positives = 73/280 (26%), Gaps = 28/280 (10%)

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P       E   ++A        +     + +I  L  +    +  +   + +       
Sbjct: 323 PEFDEYSDEAAEAQAVADRIRNLIASGVPTSEIAILYRINAQSVLFENALSDLGIPYQVK 382

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
           + E       + + +         +             +           +   +  R  
Sbjct: 383 NGEGFFQRREVGEGMQALFRAAERFDPQPGEVYDAALAALHLVGLTANEPSGAQERERW- 441

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
                 +  + L+ L S+++E    +   AI        ++          + + + +  
Sbjct: 442 ------QSLRALADLISEMVEDNPELTLRAIML------MLRERAESKNPPRVAGVTLAS 489

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              ++ L +D + L GL EG  P              +     + +    +    +    
Sbjct: 490 IHSAKGLEWDAVFLVGLVEGTLPF-----------HLALKGAGSEQAIEEERRLMYVGIT 538

Query: 693 GTRH-LIYTRSLRENNIP---TIASRWLQRLLVLGGTDFF 728
             R  L  + S             +R+L  L+   G D  
Sbjct: 539 RAREHLFLSWSQARREGGRANRRRTRFLDGLIPTSGADAT 578


>gi|239908585|ref|YP_002955327.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
 gi|239798452|dbj|BAH77441.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
          Length = 1055

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/423 (11%), Positives = 103/423 (24%), Gaps = 84/423 (19%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TL+   R    + +    +     T+RA  +LR              P   +L  +   
Sbjct: 502 HTLLARIRELLSHGVAADKILAVTFTRRAAAQLRERLARDDAGGDI--PRADTLHALALA 559

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                      +     + +RL +LA                  PE P S   S    + 
Sbjct: 560 ALAEAGGSE-PVVLSEDSARRLFDLAN-----------------PELPRSRAKSAWQELS 601

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
           LA            E+     L                    + +  + E   +   S  
Sbjct: 602 LA-----------REKMAPPVLTPQGMAGP-----------GLYAARYAEAKRQARLSDF 639

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                  + A A    +     +++       P    L++ V    + A +    D    
Sbjct: 640 TDLLEGWLAAIASGRSRPAWTHVLVDEVQDLTPLQLALIAAVCG-RDRASLFAIGDPDQS 698

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +   T                             ++        +++      +   
Sbjct: 699 IYGFRGATG---------------------------GVREALRAFWPDLTEIALSDNFRS 731

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--------- 378
           +   L       R    L ++     +    + L EA     EA  +A  L         
Sbjct: 732 AAPLLTLAAGVFRGRAALASRAGPEVQAHCRIELYEAPTAAAEADWVAQRLSGLVGGSSL 791

Query: 379 ---RMSLDEN--KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
              R   +++      A++     L   ++  L+R G+ + +             +L + 
Sbjct: 792 TLSRDFSEKHLAPGDIAVLVRFSGLIGPLRQALSRVGLPVSVPEAEAFFNEPRVRLLLAA 851

Query: 434 LNA 436
              
Sbjct: 852 AGL 854


>gi|218193239|gb|EEC75666.1| hypothetical protein OsI_12457 [Oryza sativa Indica Group]
          Length = 963

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 90/899 (10%), Positives = 206/899 (22%), Gaps = 101/899 (11%)

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
            L   ID +  E     DL              A   ++ + +    +  EL     +  
Sbjct: 88  ALFTAIDELFDEPLTLRDLIM----------ARALSEIRTSIQQEKRQRAELGFDDLLSR 137

Query: 211 QIALMR----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
             + ++     +    ++      +I     + P   R+   +        +L   D   
Sbjct: 138 LDSALQSGGGEQLAQAIRQRYPVAMIDEFQDTDPQQYRIFQKLYVGRPDCGLLLIGDPKQ 197

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD-IKREDVKRLGNVSNEMYGRSM 325
               +      +     S  +      Y+L         +          V        +
Sbjct: 198 AIYAFRGADIFTYMRARSEVSAH----YTLETNWRSSPSMVASVNHLFSQVEKPFLFGQI 253

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
              +         +      + +               +  ++  A   A  +R  L   
Sbjct: 254 PFIEVNAAEKNQGLAFELHGKPQPAMQFWLQQGEGAGVSGYQQLMARLCATQIRDWLSAG 313

Query: 386 KK-----------------KSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHS 427
           ++                    ++   RN A  V+  L+   I  + +S    +  T  +
Sbjct: 314 QQGLARLQSGKASRPVQASDITVLVRSRNEAALVRDALSALSIPSVYLSNRDSVFDTPEA 373

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             L  LL A+        + + +   L     P                        + +
Sbjct: 374 KDLLWLLQAVLAPEQERTLRSAMATGLMGLDAPTLDGLSRDERAWDAL---------VNE 424

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
             +     +            ++R   E+   +      +   +      +         
Sbjct: 425 FDNYRTLWLRRGVLPMLSEVMKARHLAENLLASAGGERRLTDVLHLGELLQEAAAQLDSE 484

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            ++  W        Q +     +        E  + L  +    I     ++ + +    
Sbjct: 485 HALVRWL------AQQIAQPNRQSDNQQLRLESDRHLVQVI--TIHKSKGLEFDLVWLPF 536

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
           +       + +         L  L   E      +   L      ++   T      S  
Sbjct: 537 VGNFRQQQQALYHDRHSFQALLDLDADEESQAWAEEERLAEDLRLLYVALTRSVYHCSIG 596

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
           +         ++            + +      +  +  +   +  R LQ+L+  G    
Sbjct: 597 IAPLFQGTRKKQGD-------TDLHRSALGYLVQGGQPGDAVYLQER-LQQLVGGGIALS 648

Query: 728 FDNLK--KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                  +  Q        L   +     +            +  +      L       
Sbjct: 649 LVEPPDAEPWQPQASLAEALAAKSFTRRIQDFWRVTSYTGLQQHGASLMQDLLPRLDVDA 708

Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL----------- 834
              R  + +        P     GT  H++   L   +       +  L           
Sbjct: 709 AGERGEESEPALTPHTFPRGATPGTFLHSLFETLDFTQPLDEQWLLEQLQQQGFAEHWQP 768

Query: 835 -MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI----PAKM 889
            +   +            + +      HK +              +++   +    P   
Sbjct: 769 ILLAWMQVLLNTPLDDSGVTLAALTPQHKQAELQFYLPINRLLQAKELDALVKRYDPLSA 828

Query: 890 AIESIGIH-----LTGFADRIDLLKSGFVDITDYKTG---------DNPKKET--AQKLI 933
              ++  H     L GF D +   + G   + DYK+            P  E   A+   
Sbjct: 829 RCPALDFHQVQGMLKGFIDLVFCWQ-GKYYLLDYKSNWLGEDSSAYTRPAMEQAMAEHRY 887

Query: 934 DPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
           D Q  L   AL      ++      R    + Y+ L+                A EL  
Sbjct: 888 DLQYQLYTLALHRYLRHRLPDYDYRRHFGGVIYLFLRGVDAAHPGNGIFTCLPAFELVA 946


>gi|319789611|ref|YP_004151244.1| hypothetical protein Theam_0632 [Thermovibrio ammonificans HB-1]
 gi|317114113|gb|ADU96603.1| hypothetical protein Theam_0632 [Thermovibrio ammonificans HB-1]
          Length = 823

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/437 (12%), Positives = 118/437 (27%), Gaps = 59/437 (13%)

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             +  +      +  +L +++W +              RK  NL  +             
Sbjct: 317 AVVKEFLHEIRESEESLPLTEWLRRLW-------SRSFRKSDNLEKQLLKLLREIEGLSE 369

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                  + N  +    + +L+              + +     +  L  + +I   L+E
Sbjct: 370 RGLFLDRRLNGPQARKELLKLLQNRFYMTDDNDPFGVHVCSPESAVSLFPEAVIFIDLSE 429

Query: 652 GVWPKNTAKNPFLSRVMQSDLNL------------KTAEKYIGQAAHDFEMAN------- 692
           G +P+    +P  S   +  +N              + +  I      F           
Sbjct: 430 GSYPRAFPYDPDFSYAEREQINRLLKACGLSNQPFPSRKNLIAYDFLTFHNILSLPLKLF 489

Query: 693 ------GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                      ++T  LRE      A  +  R  V     +    +   +         D
Sbjct: 490 FATVNRRRGESLFTYLLREFAGAKEAPEFATREAVNAFRVYKGEREPETEPERGIVGWKD 549

Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
              ++    +      L  + +  + S++   +  P   +    L  D           +
Sbjct: 550 QGPERAFLVKGS--KALRKRLKEITVSQLLSYLRCPTEAFIELFLTPDTQDSI-----FS 602

Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
             GTL+H +I                    +  +  F +         I +    K    
Sbjct: 603 AEGTLYHRLI---------AAGDSWEEEFDREFERLFSRLKAGEKKLEILKEALKKNFSR 653

Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
           F++     ++   +        + +E     + G AD I   +   + I D+K G    +
Sbjct: 654 FIK-----KAGPIEGKHEEELAVTVEGT--VIRGRADLIVEAE--KLKIVDFKRGSVKVR 704

Query: 927 ETAQKLIDPQLSLEAAA 943
                    QL L AAA
Sbjct: 705 --VTDSEAIQLLLYAAA 719


>gi|184156689|ref|YP_001845028.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Acinetobacter
            baumannii ACICU]
 gi|332873097|ref|ZP_08441054.1| putative exodeoxyribonuclease V, beta subunit [Acinetobacter
            baumannii 6014059]
 gi|183208283|gb|ACC55681.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Acinetobacter
            baumannii ACICU]
 gi|322506576|gb|ADX02030.1| recB [Acinetobacter baumannii 1656-2]
 gi|323516455|gb|ADX90836.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Acinetobacter
            baumannii TCDC-AB0715]
 gi|332738609|gb|EGJ69479.1| putative exodeoxyribonuclease V, beta subunit [Acinetobacter
            baumannii 6014059]
          Length = 1232

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 92/904 (10%), Positives = 222/904 (24%), Gaps = 197/904 (21%)

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHL-------MKGTKGPIIIAGSTGSIPAT 242
               K   + L     ++       L  A            ++     I++     +    
Sbjct: 365  EVKKRLPQVLQNKGETTFSQQIRTLSEALKGEQGQRFAVFVQARYPLILVDEFQDTNQDQ 424

Query: 243  ARLMSTVANHPNGA---IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
              +++++  HP       ++   D       +    +  T + +     + H      KL
Sbjct: 425  DDMLASIWRHPERYQKGCMIMVGDRKQAIYGFRG-GDMLTFLNAYKDIQAKH--GREYKL 481

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            +       +    L  V + ++ R +   +               +             +
Sbjct: 482  IHNHRSVAD----LVEVVDALFQRQIDFGEQVQYDPIRAGTRPHPVLIDQNQPNPHP--L 535

Query: 360  ALIEADNEREEAISIAIALRMSLDENK-----------------KKSALITADRNLARRV 402
              +   ++  EA  +A  +R  L+++                     A+++ + +   +V
Sbjct: 536  RWLMLKDKETEAQQVAWKIRDLLNQSHAGQLYFQKDAQTQTLNEDDIAVLSRNHDGLDKV 595

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
            + EL R GI ++  +   +     +  +              A+ T + HP         
Sbjct: 596  QFELERLGIRVNRPSKRSVFDCTIAQDV-------------GALLTAILHPY-------- 634

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                     E    R   +    MDLK L+                              
Sbjct: 635  --------DEAKVKRALISRLFAMDLKQLLQ----------------------------- 657

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLS-ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             ++   + ++  +T              +  W +          L   +   N       
Sbjct: 658  -LEQTAEGLSQFMTGFDTIRELWSAQGFLVAWQQCLNQFGIWKNLVAVQSKDNERVVVNL 716

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLI-DGETVKPKIEKSSTLFILGTLESRLLN 640
            + L+ + S+  E     +     ++  +   +     ++ ++   + + ++   +S+ L 
Sbjct: 717  RHLTEILSQHSEKYQGAQNLYHWYLKQLQSPLDREWELERRLSSEAGVQLMTIHQSKGLE 776

Query: 641  FDTLILGGLNEGVWPKNTAKNP----------------------FLSRVMQSDLNLKTAE 678
            F  + L G ++     N   N                         + + +++L      
Sbjct: 777  FKIVFLLGADKPFRENNKTLNFSTQDITVSESAQTLTQRVVAIADKTYLNENELKQHEER 836

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                Q    +       H +   +L ++      S                   +     
Sbjct: 837  ALAEQNRLWYVALTRASHRV--YALLQDTDGKSVSGLAFWKNRAEPFQHRCCTDEIILEQ 894

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA------RRILK 792
                R L+        +               SFS + Q +                +L 
Sbjct: 895  PPAARHLNQHINIIEIQAQHFPDQRFYSRGKTSFSYLAQHLRHKVGTDLLASQSHEAVLA 954

Query: 793  LDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINHLMKQ 837
             D +           +               G   H I   +  +  ++   EI    K 
Sbjct: 955  EDELDQVISVEAPAAQPISWIKSNFPRGTLAGNFLHEIFEHIDFQCSDEWVSEIRRRFKN 1014

Query: 838  IIDSHFEKENL-----PPHIDIIWRHLFHKISHSFLE------HEEKIQSSIEKIF--VN 884
               S ++   +      P        L+H ++    E      ++    + ++       
Sbjct: 1015 DYSSLWQDLLIKYQESFPEEQEAEYSLYHAVAEWLQEILSTPLYQGFRLNRLQPEHYLSE 1074

Query: 885  IPAKMAIESIGIH--------------------------LTGFADRIDLLKSGFVDITDY 918
             P  +A+    +                           L G  D +         I DY
Sbjct: 1075 CPFYLALSDRVLAMKRIQQLFAEYGMEMPELLEARSARYLNGSIDLVYFDG-QRYHIADY 1133

Query: 919  KTG---------DNPKKETAQKLID--PQLSLEAAALKAGSFSQID----CRKVANLFYI 963
            K+                 +  L     Q  L   AL      ++      + +    Y+
Sbjct: 1134 KSNYLGENLADYSVESIAQSMSLASYWLQAGLYLVALHRYLKVKMQNYDIEQHLGGATYL 1193

Query: 964  RLKQ 967
             L+ 
Sbjct: 1194 YLRG 1197


>gi|229084227|ref|ZP_04216510.1| ATP-dependent nuclease subunit A [Bacillus cereus Rock3-44]
 gi|228699027|gb|EEL51729.1| ATP-dependent nuclease subunit A [Bacillus cereus Rock3-44]
          Length = 579

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 60/182 (32%), Gaps = 29/182 (15%)

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            R  +K       KK     +RGT  H ++  +     N   P    ++++ I     KE
Sbjct: 381 LRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHV-----NLQKPITAEVIQEQIAEMVNKE 435

Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG----------- 895
            L    +        +I   F     K   + + +   +P  M + +             
Sbjct: 436 LL--TFEQAEEITIDRIVAFFDTDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGQGKE 493

Query: 896 -IHLTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAALK 945
            + + G  D +   + G + + D+KT    G  P      +         QLSL A AL+
Sbjct: 494 SVLVQGVIDCMIEEEDG-IVLIDFKTDTIEGRFPGGYDQARPILEDRYKVQLSLYAKALE 552

Query: 946 AG 947
             
Sbjct: 553 KS 554


>gi|288922526|ref|ZP_06416708.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288346115|gb|EFC80462.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 754

 Score = 57.2 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/598 (11%), Positives = 141/598 (23%), Gaps = 50/598 (8%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T RA  ELR     + G         ++         +        +  P  
Sbjct: 52  GQILAVTFTNRAAAELRGRL-RLMGADGV---QARTFHAAALRHLSYFWPKVAGVALPRL 107

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE-- 162
              R+  L R                          + A        L D+   +E    
Sbjct: 108 EKSRVPLLVR------------------------AANRARLRPDRAELRDLAAEVEWAKS 143

Query: 163 -EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                 D      E        A D +    + + +   E          +       EH
Sbjct: 144 MMVAPADYVHAAAEHGREG-SYAPDVVARLYEAYEDVKGEAGVLDFDDLLLLTAAVIEEH 202

Query: 222 -----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                 ++      ++       P   R++       +   V+   D H     +   + 
Sbjct: 203 SWVAAELRSRYRHFVVDEYQDVNPLQQRVLDAWLGDRDSLCVV--GDEHQTIYSFTGASA 260

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           +           +T     L +              L + +      +   + S L   +
Sbjct: 261 RHLLDFPRRFPTAT--VVRLVRDYRSTPQVVALANGLLDGAPPAAASAGSAASSGLAGSS 318

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITA 394
                      ++  ++        +EAD+E EEA  +A  +R  L         A++  
Sbjct: 319 GSAAAPPGPRGRLVAMRPAGPAPTWLEADSEPEEAAGVARRIRGLLATGVAASDIAVLYR 378

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               +   +  L R  I   +  G         +    +L A  +  +          P 
Sbjct: 379 INAQSEAYETALARADIPYLLRGGEKFFERPEVTAAVRMLRAAVRSAEPDR-------PG 431

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                    L                +     +L +L    I  +               
Sbjct: 432 GLGDAVADGLGALGWQPGAAPAGRGADRERWENLAALHRLAIDLEAARPDADLEVFVADL 491

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
            ++             +  L   K  +      + + + T   V    +  + E R+L  
Sbjct: 492 AERAANQHTPTVQGVTLASLHAAKGLEWDAVFLVGLVEGTLPIVHAQTDEQIAEERRLLY 551

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
           +        L+  +S     G+        ++D + R            +++     G
Sbjct: 552 VGITRARVHLALSWSLARAEGARRSRRPSRFLDDLRRAAATAGGTRGSSRTAATRAPG 609


>gi|242280428|ref|YP_002992557.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638]
 gi|242123322|gb|ACS81018.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638]
          Length = 1034

 Score = 57.2 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/447 (9%), Positives = 105/447 (23%), Gaps = 102/447 (22%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
           P +   + ++   +   L    R           +     T++A +E+    +       
Sbjct: 484 PGTGKTQTLM-GRIKHLLERGTRAR--------RILALTFTRKAAEEMNDR-MRSMLGDD 533

Query: 73  TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
            +LP   +L  +  E +      +++ +P + N                    +     P
Sbjct: 534 EVLPRADTLHALALEYW----ASAFDHDPIILN--------------EETARRVFGRANP 575

Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
           E   +   S  ++I LA+   + +           ++ A    +   +            
Sbjct: 576 ELNSAKLKSAWDSISLARETLETLSE------GPAEILANYTRQKDQY---NLVDYTDLL 626

Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
           ++W   L                          T   +++       P    ++  +   
Sbjct: 627 EFWLSELKSDKYV-------------------RTFTHVLVDEVQDLSPLQLAIVQRLVGD 667

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
            +G  +    D       +        N                    + L         
Sbjct: 668 -DGEGLFAIGDPDQSIYGFRGAAGNVAN--------------RFRAFWENL--------- 703

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                            +    D S     +  + K     +   D+ L  A +   EA 
Sbjct: 704 ------IKITLEDNYRSAQGVLDASASVLENPPQLKAHKNYEA--DIHLFSAPDSGREAS 755

Query: 373 SIAIALRMSLDENKK--------------KSALITADRNLARRVKLELTRFGINIDISAG 418
            I   ++  +                     A++   + L   ++  L R GI   +   
Sbjct: 756 WIGERIKQLIGATSHSLVDAGEHGTLSPGDIAVLVRFKALIGPIEAMLKRQGIPCSVPET 815

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMA 445
                     +L +    +    +   
Sbjct: 816 ESFWHDPRVEVLLAAARRMLGFAEDAD 842


>gi|282849710|ref|ZP_06259094.1| ATP-dependent nuclease subunit A [Veillonella parvula ATCC 17745]
 gi|282580647|gb|EFB86046.1| ATP-dependent nuclease subunit A [Veillonella parvula ATCC 17745]
          Length = 1251

 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 48/165 (29%), Gaps = 19/165 (11%)

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
            K   +            GTL H  +  L      +        + + +D+   K      
Sbjct: 1073 KPQALQSEDDVLTGAQWGTLMHEAMQWLPLVTYTQ------ASLTKELDALVAKGTFTEE 1126

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH----------LTGF 901
               +   +   +   F     K   + ++I   +P  M  E   ++          L G 
Sbjct: 1127 ERNLLSDM--SLYKFFSSDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGENLFLQGI 1184

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             D     + G   + DYKT      E   K    Q+ L   AL+ 
Sbjct: 1185 IDTAFE-EDGEWVLVDYKTDRVTSGEELIKRYKIQMDLYKEALQR 1228


>gi|26991357|ref|NP_746782.1| exodeoxyribonuclease V, beta subunit [Pseudomonas putida KT2440]
 gi|24986421|gb|AAN70246.1|AE016664_2 exodeoxyribonuclease V, beta subunit [Pseudomonas putida KT2440]
          Length = 1224

 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 80/843 (9%), Positives = 194/843 (23%), Gaps = 80/843 (9%)

Query: 196  TERLVELNASSPVGYQIALMRAEA----EHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              R  E+     +      + +EA      L++      +I     + P    +   +  
Sbjct: 349  KRRRAEMGFDDMLVRLQHALASEAGERLASLIREQFPVALIDEFQDTDPVQYGIFERIYQ 408

Query: 252  HPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
                     +    D       +      +       T+   H   +  +    +     
Sbjct: 409  ISENRAETGLFMIGDPKQAIYAFRGADIYTYLAARRATSGRLHSLDTNYRSSKAMVAAVN 468

Query: 309  DVKRLGNVSNEMYG--RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL----- 361
             V           G         + LP      +           +        L     
Sbjct: 469  QVFLQAEAREAGRGAFLFREADDNPLPFIEVRAKGRGEQLLIDGEVSAALQCWQLESEEP 528

Query: 362  IEADNEREEAISIAIALRMSLDENKK-------------------KSALITADRNLARRV 402
            + +   R++  +   +  ++L    +                     A++  D + A+ V
Sbjct: 529  VSSSVYRQQMAASCASHIVALLNGGQQGTSGFRNAEGELRACLPSDIAILVRDGHEAQMV 588

Query: 403  KLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM---AIATLVKHPLAKFG 458
            + EL  R   ++ +S    +     +  L + L A  + +      A    +   L+   
Sbjct: 589  RAELAAREVRSVYLSDKDSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLAA 648

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                          ++  R  ++++    +  ++   +   +    +   +    E    
Sbjct: 649  LDRLNQDERVWESWVMRFRLYRDTWQRQGVLPMLRHLLHDFQLPRTLI--RRSDGERVLT 706

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
              + L + + Q    L               ++   +     +  +  DE         +
Sbjct: 707  NLLHLAELLQQAAGELD--GEQALIRHLAEHLASSGQAGEEQILRLESDEQLVKVVTIHK 764

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWID------IITRLIDGETVKPKIEKSSTLFILG 632
             +G     ++   I T   +  + +              L   +    + +       L 
Sbjct: 765  SKGLEYPLVYLPFICTSKPVDGSRLPLAWHDSEGNAHLTLTPDQEQIERADDERLAEDLR 824

Query: 633  TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
             L   L         G+ +       +     S                     D+  A 
Sbjct: 825  LLYVALTRAQHACWLGVADLKRGNLKSSQLHRSAFGYLLGGGLALAGSAQLT--DWLQAL 882

Query: 693  GTRHLIYTRS-------LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
                   T                        R       + +           D T   
Sbjct: 883  AASCPHITCPGLPQADEQMYRMPHAERELLPARRPRHAAAEHWWIASYSALRVGDQTLGA 942

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
            D +  Q       P      +       +I +    P        L          +   
Sbjct: 943  DSSQAQQLLDDEVPD-AQVLREVPADSGDIHRFPRGPNPGTFLHGLLEWAGREGFSEVSA 1001

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              +  +   +     ++      P ++H M++++            + +     +     
Sbjct: 1002 NPQ-LIERTVGQRCNRRDWAGWIPTLSHWMQRLLSEALPLPGSDQSVTLGQLRHYQIEME 1060

Query: 866  SFLEHEE---KIQSSIEKIFVNIPAKMAIESIGIH---LTGFADRIDLLKSGFVDITDYK 919
             +        +    +     +           +      GF D    L  G   +TDYK
Sbjct: 1061 FWFASHRVDAEQLDRLVARHTHPGLARPAAQPTVLNGMFKGFIDLAFEL-DGRYYVTDYK 1119

Query: 920  TG-----------DNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIR 964
            +               +K   +   D Q  L   AL     +++      R V    +I 
Sbjct: 1120 SNWLGADIQAYDAMAMEKAILEHRYDLQYVLYLLALHRQLRARLADYDYDRHVGGALFIF 1179

Query: 965  LKQ 967
            L+ 
Sbjct: 1180 LRG 1182


>gi|298505648|gb|ADI84371.1| exodeoxyribonuclease V, beta subunit [Geobacter sulfurreducens KN400]
          Length = 1204

 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 96/994 (9%), Positives = 221/994 (22%), Gaps = 78/994 (7%)

Query: 55   RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS-NIQRLLELA 113
            R   E+R  F  ++    T    I ++         +      +L P +   +      A
Sbjct: 213  RVAGEIRDAFAALSSLWRTQRAEIAAILAADPGLSRSRSNYHPDLVPGLLVAMDGYAAGA 272

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
                ++          L  +          +   L   LA +           + L  LK
Sbjct: 273  DPYALFAGFDKFTTGFLAGQRLKKADPPRHDCFDLCDRLARL---------TSQRLLLLK 323

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
                  +     + L         R  +   +           A      +G     +I 
Sbjct: 324  ----AEFAARGRERLAALKAQRNVRGYDDLLTDLHAALGGPGGAALADRPRGRYRAALID 379

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
                +     R+   V +      +    D       +      +               
Sbjct: 380  EFQDTDQVQYRIFRAVFS-GGAVPLFLIGDPKQAIYSFRGADVFAYLEARQEIPAERRFT 438

Query: 294  YSLAKL-----------LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                             L  L  +   +            R    S     P    +   
Sbjct: 439  MDRNWRSTPEMVEAVSSLFRLGGEHPFLAGDIAFPPVTAARRQGCSFGDRDPAPLQLWFF 498

Query: 343  DILENKIPNIQKCFSDVALIEA-DNEREEAISIAIALRMSLDEN--------KKKSALIT 393
               E+    I        ++ A  +E    ++   A    L++             A+I 
Sbjct: 499  RRGESDRDCINLGTGRQRIVTAVADEISGLLADGRAGTACLEDEDGRMQPLTPGDVAVIV 558

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                 A  V+  L   GI   + +   L  T  +  + +++ A+ +  +   +   +   
Sbjct: 559  RSHFEAGLVQQALRERGIPSVVQSADSLFETREAGEVWTVMGAVAEPGNEGRVRAALVTA 618

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L      +  L   + A     +   ++  D+   +  +    A                
Sbjct: 619  LFGLNGNDLALLMEQEAAWEARIAAFRDYRDLWREQGFMTMFRALLDREGVRERCLPLPD 678

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT--KLTVTCLQNVCLDEHRK 571
             E +   +     +L           +  +      +S     +     L++        
Sbjct: 679  GERRLTNLRHCAEVLHQAAVERRLGPDALTAWFGERVSVPPPGEDYQIRLESDDRAVRIV 738

Query: 572  LPNLWFEEEGKTLSSLFSKI-IETGSCIKANAIEWIDIITRLIDGETVKPKIE--KSSTL 628
              ++    E   + + F    +     +     E   ++         + +      +  
Sbjct: 739  TVHVSKGLEYPVVFAPFMWGGLRDDGDLTLCHEEGYRLVADFGTDRRDERQRRARTEALA 798

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
              L  L   L            +    + +A    L            A           
Sbjct: 799  ENLRLLYVALTRARCRAYLVWGKFRGAETSAPGWLLHGSRPDGGGDPVALLEGTLKKATD 858

Query: 689  EMANGTRHLIYTRSLRENNIPTIASR-WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
            +        + T S     +        L R     G         RG     W R   +
Sbjct: 859  QTLLERLDHLATASGGGIAVTEDPCPDRLPRFRPAMGEAPLVCRDFRGDIDAGW-RVASF 917

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
            T+    ++ P   P  +  P              P                     ++ D
Sbjct: 918  TSFASGHREPAELPDRDQTPPELPPDAASDTAAPPEGSMFAFPRGPRAGIFLHGLFEQLD 977

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH----------------FEKENLPPH 851
                  + + +L+++ + +N       +  +                             
Sbjct: 978  FAVAGDDTVRDLVRRELERNGHGAQW-LDPVSRMVGNVLNVPLGGEGNSFRLADLAPGSW 1036

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV---NIPAKMAIESIGIHLTGFADRIDLL 908
            +  +  +   +             + +         +  ++A       + GF D +   
Sbjct: 1037 LAELEFYFPLRFVRDAQVATILAGAGVLPQGADLGAVARRIAFGEARGMVRGFVDLVFRH 1096

Query: 909  KSGFVDITDYKTGDNPKKET-----------AQKLIDPQLSLEAAALKAGSFSQIDC--- 954
              G   + D+K+     +              + L   Q  L   AL      ++     
Sbjct: 1097 S-GRYYLIDWKSNHLGNRAEDYGPERLCREMERSLYPLQYLLYTVALNRFLERRLPGYRY 1155

Query: 955  -RKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
                  +FY+ L+                  +L 
Sbjct: 1156 EEHFGGVFYLFLRGIDPERPALGVYHDLPRPDLV 1189


>gi|51891749|ref|YP_074440.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51855438|dbj|BAD39596.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 672

 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/546 (11%), Positives = 124/546 (22%), Gaps = 102/546 (18%)

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARL 245
             + + E   E             +             +   G I++     + P    L
Sbjct: 219 LLRRYAEAKAEQGLLDFDDLLHEALALLRGRPELLEGYRRRFGHILVDEFQDTNPVQFAL 278

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           +  +A       V+   D       W   T +                            
Sbjct: 279 VRLLAEPGRNLCVV--GDDDQAIYGWRGATPEFLLSFGDLYP------------------ 318

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                   G     +       +      +     N   L   +  +++    V L+   
Sbjct: 319 --------GAAQVTLAVNHRCPAPVVEAANRLVAHNVRRLGKVMRPVRRSGPPVRLLTPA 370

Query: 366 NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP-LSTT 424
           +  EEA  IA  +R +        A+I      A  +   L+R GI      G+P L   
Sbjct: 371 DTVEEAEVIARLVREAGAPLSH-WAVIYRTNQQAHVLAEVLSREGIPYRTLGGLPNLYRR 429

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                + + L A     D MA+  ++  P                 L             
Sbjct: 430 WPVQDVLAYLRAAAG--DRMALLPVLNRP--------------NRYLARAVAEEAARIAG 473

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
             D        +A       +  WQ R  EE ++    L               T   + 
Sbjct: 474 ATDGD-----LLAAIGRTGLLRTWQLRPVEELEDHLRALGR------------MTAPEAI 516

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               S+  +                  L  L   +                +  +     
Sbjct: 517 AYVRSVIGYDDYLQEYAARAGGRPDELLGLLAEVQ---------------RTAPRLLLPA 561

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
           ++  +           K  +   + ++    ++ L F  +++ G  + + P  +  +   
Sbjct: 562 YLGHVAAFSAQAD--RKAPEGQAVTLVTCHRAKGLEFPRVVVAGAVDRLLPHRSNPDIEE 619

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
            R +                     +      L  +            S ++  LL    
Sbjct: 620 ERRLM-----------------YVAVTRAREELWISAPRSYEGRECRPSPFVAELLGTAA 662

Query: 725 TDFFDN 730
               + 
Sbjct: 663 FRAAEA 668


>gi|251772974|gb|EES53532.1| exodeoxyribonuclease V, gamma subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 1124

 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 102/860 (11%), Positives = 201/860 (23%), Gaps = 105/860 (12%)

Query: 136 LSLPISPANAIWLAKNLADIIDI--IETEEKKWEDLHALKNEKYGM----WWLLAADFLK 189
                       LA  LAD+ D   I   E        L            W        
Sbjct: 119 AGDEPESLRLYDLAALLADLYDRSMIYRPELLLAWEEGLGGRDDDPVGPEGWPAVL---- 174

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
                W                +  +  E     +     + + G TG  P   R   T+
Sbjct: 175 -----WRLLSGPDRPLHRARMMVRFLSGEDPVPPEILPPALTLFGLTGMAPLDLRFFRTL 229

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 A+ L  L+       W  +        +  +       +    LL     +   
Sbjct: 230 GERHGCAVDLFFLNP--SREYWGDVVRSRRREETPESLQP--YLFRGTPLLSSWGGEFRT 285

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN--------IQKCFSDVAL 361
           V        E +          L     +   T     +           I +    V +
Sbjct: 286 VHESLAEIPEAHRLFFGTEPGGLLGQIQEDILTLFDRGEEVRSGRIERKEIPRADRSVEI 345

Query: 362 IEADNEREEAISIAIALRMSLD----ENKKKSALITADRNLARRVKLEL----------- 406
           + A     E   +   L            +   ++  D      +   +           
Sbjct: 346 VSATGRVREIEMLRDRLLELFAGDPTLTPEDVVVLAPDILPYAGIVRSVFSPGISPSGGR 405

Query: 407 ---------------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
                              I   IS       +     L  LL+   +      + TL+ 
Sbjct: 406 AGTNGGEGSAGSSEDGDPRIPFVISDRRETDASPAFQALLLLLSLPGERVTVSHLVTLLA 465

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P     F      +  + +  +   G       ++ +S V   + T      +      
Sbjct: 466 VPSIARRFDLGG--QKIDRIREILAEGGFRWGRDIEDRSEVAPSVDTHSFFWGLDRLLLG 523

Query: 512 LSEEDKELAVLL------------VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
            +   +E    L             +        L T   +           +W  L  T
Sbjct: 524 YACGPEEAPEGLPVPPVAVTEDPGGEIAGALSRFLWTLDRHLERLKDPHPAREWPGLLAT 583

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
            L+                E    L     +     S     +  W+      +      
Sbjct: 584 ILEIFFDPAEGDPV----LEILFALPGEIREGFSRASFDGEISSRWMGRHIARMAESREG 639

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                +  +     +  R L F  + L GLN+G +P+      F     +     ++  +
Sbjct: 640 RDRFLTGGVSFGRMVPLRSLPFRVVCLLGLNDGEFPRVHHPPSFDWLAARPRPGDRSR-R 698

Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
              +      + +  + L  +   RE  +  P   S  L+    +    F     +  Q 
Sbjct: 699 EDDRTLFLEALLSARQVLWLSYLGRESRDGSPKEPSVLLREFEDVVAEGFTGEGGEEIQK 758

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--YSFSEIKQLINDPYAVYARRILKLDF 795
            +     +D  +   +   P P     ++        S           V+  R L L  
Sbjct: 759 QILLEAPVDPLSPSHYGDSPDPRLHSFSRSWREVLDASRNDGWKAP---VFWDRDLLLPM 815

Query: 796 IPHFKKDP----------DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII----DS 841
                             +      L     +   ++    +    +  +++I+      
Sbjct: 816 PEPGAAGILLDDLRFFHSNPARFFLLRRLGFSSRAREIDLPDDEPFSLSLREILKGLDQR 875

Query: 842 HFE-KENLPPHIDIIWRHLFHKISHSFLEHEEKIQS--SIEKIFVNIPAKMAIESIGIHL 898
            FE      P +  +      +     +    ++    S E   V I  ++    +G+ L
Sbjct: 876 SFEVDGIPWPPLGPLQLSEGIRHKGDHVGRIGRLLGLLSGEPEAVEISLEL----LGVRL 931

Query: 899 TGFADRID-LLKSGFVDITD 917
            G    I    + G V + D
Sbjct: 932 VGRLSGILTKTEGGRVRVVD 951


>gi|317153565|ref|YP_004121613.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943816|gb|ADU62867.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
          Length = 1055

 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 78/766 (10%), Positives = 171/766 (22%), Gaps = 110/766 (14%)

Query: 226  TKGPIIIAGSTGSIPATARLMSTVAN--HPNGAIVLPGLDCHIPTAIWNTITEKSTNI-- 281
                +++     +     + ++ +A      G  +    D       W            
Sbjct: 368  RLHHLLVDEFQDTSREQWQAVTPLAQECLAKGGSLFYVGDIKQAIYGWRGGDSALFGEVM 427

Query: 282  ----------------TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                               N     +           L       +    +         
Sbjct: 428  TQPDLASLALTTASDTLPDNWRSFENVVAFNNAFFGNLQDPDLTRELADTIFTAAPDDFR 487

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                + L         +   +N           +   +AD   E+ +     L   L   
Sbjct: 488  ADFATDLTRTFDGCAQSVPQKNAGTGGYVRMERLEGGKADEVEEQTLDALGTLMDQLTAR 547

Query: 386  KK--KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
            ++  + A++    + A  V   L   GI +     + L        L + L  +    D 
Sbjct: 548  RRFGEIAVLVRSHDHAGLVCDLLVSKGIPVITEKSLQLDRHPLVRQLAAFLAFLDFPRDD 607

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            +A  T                                        + L L      +   
Sbjct: 608  VAFLTFASG------------------------------------EELFLAEAGITQAEF 631

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
            H    + R      +      +H  + I P                     +        
Sbjct: 632  HDWLMRPRKRPLGVQFREDFPEHWQRFIEPFYNQSGLMTPYDLTREAMRVFRALER---- 687

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                           +    L      +         +   +++  +     E V P  E
Sbjct: 688  -------------HPQAELYLRRFLEVVHLAEENGYGSLSAFLEYWSGKSAEEKV-PLPE 733

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                + I+   +++ L F  +I+       W  +T K+  + +   + L L   +K +G+
Sbjct: 734  NIDAVRIMTIYKAKGLEFPVVIVPF---HNWTADTDKDYEIRQFKGARL-LTPLKKGLGK 789

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
              H          L                 +              +L         + R
Sbjct: 790  PYHASLGRTVREQLNLLYVAWTRARE-ELYGFFTEKPATSPALAAMHLFLDLDGSGLFER 848

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                              P            ++ +   P     R  L        +   
Sbjct: 849  GQRPAEVTTTRTHAPAALPASPLAARTDQDGVRLMGWLPRLRVYRHHLD-------EYFY 901

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
            +   RG + H  +  L  +       + +  ++  +      + LPP             
Sbjct: 902  NERMRGEVAHRAMEHL--RVTGHQEADSDRAVRLAMRDFPALDALPPD----ELVRLETD 955

Query: 864  SHSFLEHEEKIQSSIEKIFV-NIPAKMAIESIGIHLTGFADRIDLLKSGF-VDITDYKTG 921
              +         +  + +       ++              R+DLL  G    + D+KTG
Sbjct: 956  LRAMTLWALGQDNLCQWLATGQREPEVMDTDGSFK------RLDLLHRGESTVVADFKTG 1009

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
              P  +  +++ D         L+              L Y+ L++
Sbjct: 1010 Q-PSPKNREQVFD-----YMRILEE--MPGTARPVHGYLVYLDLRE 1047


>gi|126640435|ref|YP_001083419.1| exonuclease V beta chain [Acinetobacter baumannii ATCC 17978]
 gi|126386319|gb|ABO10817.1| exonuclease V beta chain [Acinetobacter baumannii ATCC 17978]
          Length = 997

 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 92/904 (10%), Positives = 221/904 (24%), Gaps = 197/904 (21%)

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHL-------MKGTKGPIIIAGSTGSIPAT 242
              K   + L     ++       L  A            ++     I++     +    
Sbjct: 130 EVKKRLPQVLQNKGETTFSQQIRTLSEALKGEQGQRFAVFVQARYPLILVDEFQDTNQDQ 189

Query: 243 ARLMSTVANHPNGA---IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
             +++++  HP       ++   D       +    +  T + +     + H      KL
Sbjct: 190 DDMLASIWRHPERYQKGCMIMVGDRKQAIYGFRG-GDMLTFLNAYKDIQAKH--GREYKL 246

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
           +       +    L  V + ++ R +   +               +             +
Sbjct: 247 IHNHRSVAD----LVEVVDALFQRQIDFGEQVQYDPIRAGTRPHPVLIDQNQPNPHP--L 300

Query: 360 ALIEADNEREEAISIAIALRMSLDENK-----------------KKSALITADRNLARRV 402
             +   ++  EA  +A  +R  L+++                     A+++ + +   +V
Sbjct: 301 RWLMLKDKETEAQQVAWKIRDLLNQSHAGQLYFQKDAQTQTLNEDDIAVLSRNHDGLDKV 360

Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
           + EL R GI ++  +   +     +  +              A+ T + HP         
Sbjct: 361 QFELERLGIRVNRPSKRSVFDCTIAQDV-------------GALLTAILHPY-------- 399

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                    E    R   +    MDLK L+                              
Sbjct: 400 --------DEAKVKRALISRLFAMDLKQLLQ----------------------------- 422

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLS-ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            ++   + ++  +T              +  W +          L   +   N       
Sbjct: 423 -LEQTAEGLSQFMTGFDTIRELWSAQGFLVAWQQCLNQFGIWKNLVAVQSKDNERVVVNL 481

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLI-DGETVKPKIEKSSTLFILGTLESRLLN 640
           + L+ + S+  E     +     ++  +   +     ++ ++   + + ++   +S+ L 
Sbjct: 482 RHLTEILSQHSEKYQGAQNLYHWYLKQLQSPLDREWELERRLSSEAGVQLMTIHQSKGLE 541

Query: 641 FDTLILGGLNEGVWPKNTAKNP----------------------FLSRVMQSDLNLKTAE 678
           F  + L G ++     N   N                         + + + +L      
Sbjct: 542 FKIVFLLGADKPFRENNKTLNFSTQDITVPESAQTLTQRVVAIADKTYLNEIELKQHEER 601

Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
               Q    +       H +   +L ++      S                   +     
Sbjct: 602 ALAEQNRLWYVALTRASHRV--YALLQDTDGKSVSGLAFWKNRAEPFQHRCCTDEIILEQ 659

Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA------RRILK 792
               R L+        +               SFS + Q +                +L 
Sbjct: 660 PPAARHLNQHINIIEIQAQHFPDQRFYSRGKTSFSYLAQHLRHKVGTDLLASQSHEAVLA 719

Query: 793 LDFIPHFKKDPDRTDR---------------GTLFHNIITELIKKRINKNTPEINHLMKQ 837
            D +           +               G   H I   +  +  ++   EI    K 
Sbjct: 720 EDELDQVISVEAPAAQPINWIKSNFPRGTLAGNFLHEIFEHIDFQCSDEWVSEIRRRFKN 779

Query: 838 IIDSHFEKENL-----PPHIDIIWRHLFHKISHSFLE------HEEKIQSSIEKIF--VN 884
              S ++   +      P        L+H ++    E      ++    + ++       
Sbjct: 780 DYSSLWQDLLIKYQESFPEEQEAEYSLYHAVAEWLQEILSTPLYQGFRLNRLQPEHYLSE 839

Query: 885 IPAKMAIESIGIH--------------------------LTGFADRIDLLKSGFVDITDY 918
            P  +A+    +                           L G  D +         I DY
Sbjct: 840 CPFYLALSDRVLAMKRIQQLFAEYGMEMPELLEARSARYLNGSIDLVYFDG-QRYHIADY 898

Query: 919 KTG---------DNPKKETAQKLID--PQLSLEAAALKAGSFSQID----CRKVANLFYI 963
           K+                 +  L     Q  L   AL      ++      + +    Y+
Sbjct: 899 KSNYLGENLADYSVESIAQSMSLASYWLQAGLYLVALHRYLKVKMQNYDIEQHLGGATYL 958

Query: 964 RLKQ 967
            L+ 
Sbjct: 959 YLRG 962


>gi|39996634|ref|NP_952585.1| exodeoxyribonuclease V subunit beta [Geobacter sulfurreducens PCA]
 gi|39983515|gb|AAR34908.1| exodeoxyribonuclease V, beta subunit [Geobacter sulfurreducens PCA]
          Length = 1204

 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 95/994 (9%), Positives = 221/994 (22%), Gaps = 78/994 (7%)

Query: 55   RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS-NIQRLLELA 113
            R   E+R  F  ++    T    I ++         +      +L P +   +      A
Sbjct: 213  RVAGEIRDAFAALSSLWRTQRAEIAAILAADPGLSRSRSNYHPDLVPGLLVAMDGYAAGA 272

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
                ++          L  +          +   L   LA +           + L  LK
Sbjct: 273  DPYALFAGFDKFTTGFLAGQRLKKADPPRHDCFDLCDRLARL---------TSQRLLLLK 323

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
                  +     + L         R  +   +           A     ++      +I 
Sbjct: 324  ----AEFAARGRERLAALKAQRNVRGYDDLLTDLHAALGGPGGAALADRLRERYRAALID 379

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
                +     R+   V +      +    D       +      +               
Sbjct: 380  EFQDTDQVQYRIFRAVFS-GGAVPLFLIGDPKQAIYSFRGADVFAYLEARQEIPAERRFT 438

Query: 294  YSLAKL-----------LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                             L  L  +   +            R    S     P    +   
Sbjct: 439  MDRNWRSTPEMVEAVSSLFRLGGEHPFLAGDIAFPPVTAARRQGCSFGDRDPAPLQLWFF 498

Query: 343  DILENKIPNIQKCFSDVALIEA-DNEREEAISIAIALRMSLDEN--------KKKSALIT 393
               E+    I        ++ A  +E    ++   A    L++             A+I 
Sbjct: 499  RRGESDRDCINLGTGRQRIVTAVADEISGLLADGRAGTACLEDEDGRMQPLTPGDVAVIV 558

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                 A  V+  L   GI   + +   L  T  +  + +++ A+ +  +   +   +   
Sbjct: 559  RSHFEAGLVQQALRERGIPSVVQSADSLFETREAGEVWTVMGAVAEPGNEGRVRAALVTA 618

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L      +  L   + A     +   ++  D+   +  +    A                
Sbjct: 619  LFGLNGNDLALLMEQEAAWEARIAAFRDYRDLWREQGFMTMFRALLDREGVRERCLPLPD 678

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT--KLTVTCLQNVCLDEHRK 571
             E +   +     +L           +  +      +S     +     L++        
Sbjct: 679  GERRLTNLRHCAEVLHQAAVERRLGPDALTAWFGERVSVPPPGEDYQIRLESDDRAVRIV 738

Query: 572  LPNLWFEEEGKTLSSLFSKI-IETGSCIKANAIEWIDIITRLIDGETVKPKIE--KSSTL 628
              ++    E   + + F    +     +     E   ++         + +      +  
Sbjct: 739  TVHVSKGLEYPVVFAPFMWGGLRDDGDLTLCHEEGYRLVADFGTDRRDERQRRARTEALA 798

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
              L  L   L            +    + +A    L            A           
Sbjct: 799  ENLRLLYVALTRARCRAYLVWGKFRGAETSAPGWLLHGSRPDGGGDPVALLEGTLKKATD 858

Query: 689  EMANGTRHLIYTRSLRENNIPTIASR-WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
            +        + T S     +        L R     G         RG     W R   +
Sbjct: 859  QTLLERLDHLATASGGGIAVTEDPCPDRLPRFRPAMGEAPLVCRDFRGDIDAGW-RVASF 917

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
            T+    ++ P   P  +  P              P                     ++ D
Sbjct: 918  TSFASGHREPAELPDRDQTPPELPPDAASDTAAPPEGSMFAFPRGPRAGIFLHGLFEQLD 977

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH----------------FEKENLPPH 851
                  + + +L+++ + +N       +  +                             
Sbjct: 978  FAVAGDDTVRDLVRRELERNGHGAQW-LDPVSRMVGNVLNVPLGGEGNSFRLADLAPGSW 1036

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV---NIPAKMAIESIGIHLTGFADRIDLL 908
            +  +  +   +             + +         +  ++A       + GF D +   
Sbjct: 1037 LAELEFYFPLRFVRDAQVATILAGAGVLPQGADLGAVARRIAFGEARGMVRGFVDLVFRH 1096

Query: 909  KSGFVDITDYKTGDNPKKET-----------AQKLIDPQLSLEAAALKAGSFSQIDC--- 954
              G   + D+K+     +              + L   Q  L   AL      ++     
Sbjct: 1097 S-GRYYLIDWKSNHLGNRAEDYGPERLCREMERSLYPLQYLLYTVALNRFLERRLPGYRY 1155

Query: 955  -RKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
                  +FY+ L+                  +L 
Sbjct: 1156 EEHFGGVFYLFLRGIDPERPALGVYHDLPRPDLV 1189


>gi|307825819|ref|ZP_07656035.1| exodeoxyribonuclease V, beta subunit [Methylobacter tundripaludum
            SV96]
 gi|307733127|gb|EFO03988.1| exodeoxyribonuclease V, beta subunit [Methylobacter tundripaludum
            SV96]
          Length = 1185

 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 102/815 (12%), Positives = 228/815 (27%), Gaps = 87/815 (10%)

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
            +           AL +    +  +L    L    +   +RL +LN  S       L  A 
Sbjct: 316  LAELAIDTAAFDALASAFTQIALVLRKTLLDSLREELDKRLQQLNVLSFDDLISRLAEAL 375

Query: 219  -------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
                       ++      +I     +  +   + S++   P    +    D       +
Sbjct: 376  QSEKCELLTAELQQRFEVALIDEFQDTDDSQWFIFSSLFAAP-SQYLYLIGDPKQAIYKF 434

Query: 272  NTIT--------EKSTNITSSNTTYSTHPQY--SLAKLLDFLDIKREDVKRLGNVSNEMY 321
                        +++ +  +    + +HPQ   ++  L         +     NV   + 
Sbjct: 435  RGADIYSYLDAQKQAEHQFTLGLNWRSHPQLVDAVNALFQRDRAFFLEGLEFINVKPALS 494

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
              +  +           +       +K        +   +  A       +     +   
Sbjct: 495  ADNGELHHEGQAVAPMMLWQLPESGSKTGCWTAGKAAEEIRVAVVNEVVDLLTGDFILQP 554

Query: 382  LDEN--KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
             +     K  A++      AR  +  L   G+   +++   +  +  ++ L SLL A+  
Sbjct: 555  ANRVLLPKDIAILVRTNTQARDYQAALRLAGVPSVLNSTESVFASQEAADLYSLLQAVAH 614

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKN---ALELVALRGNKNSYDIMDLKSLVLDRI 496
              D   +   +   L  F    + L R  N    L+    R      D      + +   
Sbjct: 615  PGDSGLLKQALT--LDWFDLDGQTLYRLINNEIELDAWMSRFLGYFQDWQQTGLMAMMLH 672

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
               +        ++ ++E        L++ + Q    +  +     +     S       
Sbjct: 673  LLTQEKIRAGVSKTLMAERQLTNLHHLIELVQQA--AVDEHLGINKTLDWLRS------- 723

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                          +   L  +++   + ++        S +    +             
Sbjct: 724  ----AIAKASSAEDQQLRLESDDDAVKIVTMHRSKGLEYSIVFCPYLW------------ 767

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
                  ++S  L     L     N  T++  G ++    +  A N  L+  ++      T
Sbjct: 768  ------QRSDRLNSERLLIRCHENGRTIVDLGSDDFERHREMALNEELAEDLRVFYVAVT 821

Query: 677  AEKYIGQAAH-DFEMANGTRHLIYTRSLRENNIPTIAS-RWLQRLLVLGGTDFFDNLKKR 734
              KY    A  D    +          L             LQ      G  F   L   
Sbjct: 822  RAKYRCYIAWGDVRSQDTANDSSMAWLLEFAAADFSKQQARLQAFQNQAGQAFAYRLLDV 881

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKP--FPPLEAQPRTYSFSEIKQLINDPYAVYARR--I 790
                    +K+   T+    KR +        +     S   +      P      +  I
Sbjct: 882  PGELNGSYQKMVAHTQMQAKKRKRSLYTRWQMSSYTALSALSMHDAPELPEDKAGEQTLI 941

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIIT-----ELIKK---------------RINKNTPE 830
             K +      + P     G + H+++      +L ++                  +    
Sbjct: 942  AKSEPGSAAFELPKGAHTGNVVHDLLENHAFIDLAQRKDIATQRDKACQRYGLKLERPEL 1001

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
            ++ L++ ++ +   + N+   +  +  +   K    +L  +    + I  I  + PA  +
Sbjct: 1002 LDELLQAVVATPLSETNVDFCLMNLAENQCLKEMPFYLSMQTMDAAQINHILRDTPAFQS 1061

Query: 891  IESIGI--HLTGFADRI-DLLKSG--FVDITDYKT 920
            + +  +  +LTGF D I  +L SG     + DYKT
Sbjct: 1062 LTAKQMCGYLTGFIDLICAILDSGTRRYYVMDYKT 1096


>gi|170726988|ref|YP_001761014.1| exodeoxyribonuclease V subunit beta [Shewanella woodyi ATCC 51908]
 gi|169812335|gb|ACA86919.1| exodeoxyribonuclease V, beta subunit [Shewanella woodyi ATCC 51908]
          Length = 1229

 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 98/893 (10%), Positives = 219/893 (24%), Gaps = 139/893 (15%)

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG---------------TKGPIIIAGS 235
             S+ + ++  E N  +P      L +A   +                        +I   
Sbjct: 342  ISRRFIQQKSERNLLTPDDLLTTLEQALRPNEHGESTLANTAQLAATIAKRFPVALIDEF 401

Query: 236  TGSIPATARLMSTVANH---------PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
              + P    + S +                 +L   D       +            + T
Sbjct: 402  QDTDPLQFAIFSRIYQMQANIPAKAGAGNLSLLMIGDPKQAIYAFRGADIH--TYIQART 459

Query: 287  TYSTHPQ----YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                H      Y  ++ +        + +    +S  +    +  S         +    
Sbjct: 460  QTQDHYNLDTNYRSSRNMIVGVNALFENRDDPFISQAIPFEPVHPSPFADKKVFIESGGD 519

Query: 343  DILENKIPNIQKCFSDVALIEADNEREE--AISIAIALRMSLDENK---------KKSAL 391
            D         +     +    A     E  A  I   L  S              K  A+
Sbjct: 520  DSALKIKLLSEDPEKGLNKTTARKRLAEDAAAEICRLLTQSQAGECSISGQPLKAKDIAV 579

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +  DRN A  +K  L+   I     +   +  TL +  +  +L+A+    D  A+ + + 
Sbjct: 580  LVRDRNEAAVIKQSLSDRQIGAVFLSRDSVFNTLEAREMALVLHALATPKDERALRSALA 639

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
              L  F                          D + + S   D +  Q            
Sbjct: 640  TSLLGF--------------------------DALSIHSFNQDEMVRQTLLEQFDELHKN 673

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                    A+L + +  + I  L+  +  +        +++  +   T L  +    +  
Sbjct: 674  WLRRGVMPALLNLANETKLIERLLQDEDGERRLTDFRHLAELLQQKATELDGISALVNWY 733

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
               L      +               +  +  + ++     I   ++     +      +
Sbjct: 734  EQALIENNANEEAQLRLESEQNLVQIVTIHKSKGLEYPVCFIPFVSLARDNRRKPA--PM 791

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               E+  L +D        E    +N A++  L  V  +    +        +    +  
Sbjct: 792  LYHENNKLVWDIAQSDEGWERHKRENLAEDLRLLYVAMTRPVYQCYLYVANHSRFTKKAG 851

Query: 692  NGT--RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
              +          L   +     SR +Q             ++            +    
Sbjct: 852  ITSQLHETGIGYLLGIEDKACEFSR-IQSQAQKLMEQAISVIQMGDDASTQPLDNIS--D 908

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR---- 805
             +      +    L    R  S+S + + +   +            +   + + D     
Sbjct: 909  IELKLAPKELKRKLYTPWRVGSYSGLVKDLPHEHIAPGADDEAFPELEIIQDEVDPTPSR 968

Query: 806  ------TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL---PPHIDIIW 856
                   + G+  H ++  +       + P+    +   +    EK  +      +  IW
Sbjct: 969  FTFERGANAGSFMHLVLELI-------DFPQAETELPIHLPIAMEKYGIDESWYEVLNIW 1021

Query: 857  RHLFHK---ISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------------------SIG 895
                     ++   L+  +   +      V +   + I                    + 
Sbjct: 1022 YRDLLASPLVADGSLKLAQLAHAQ---KLVEMEFYLPINQLIAVKLNTLLETHGYSAGLN 1078

Query: 896  IH-----LTGFADRIDLLKSGFVDITDYKTGDNPK----------KETAQKL-IDPQLSL 939
                   L GF D     + G   I DYK+               K   +    D Q  +
Sbjct: 1079 FESLKGMLKGFIDLTFEHQ-GQFYIADYKSNHLGDDVSHYGFDAMKGAIRSHRYDLQYII 1137

Query: 940  EAAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
               AL      ++      + +   FY+ L+       ++          L E
Sbjct: 1138 YTLALHRYLRLRMPNYNYDQHIGGSFYLFLRGMSTAAPLSGVFYDKPPRALIE 1190


>gi|296168414|ref|ZP_06850294.1| exodeoxyribonuclease V beta subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295896708|gb|EFG76343.1| exodeoxyribonuclease V beta subunit [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 1103

 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 91/883 (10%), Positives = 194/883 (21%), Gaps = 109/883 (12%)

Query: 115 LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174
           L+      + +I+ DLY          PA A   A  LA      E        L  L  
Sbjct: 147 LLESLDELIVEIVDDLYLAHFGRERDDPALAYRDALRLAR-----EVVRNPSTQLRPLHP 201

Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA------EHLMKGTKG 228
           E       +   F K        R   L           L  A A         M     
Sbjct: 202 EPGSR-AAVCVGFAKEVLAELDTRKRRLGVLDYDDLLSRLADALATDDSPARVRMHHRWP 260

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT-------EKSTNI 281
            +++     + P   +++    +    + V+   D       +            ++   
Sbjct: 261 IVMVDEFQDTDPVQWQVIDRAFS--GRSTVILIGDPKQAIYAFRGGDIVTYLRAAETAGE 318

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
             +  T        + +L   L   +     +     + Y R   ++ +           
Sbjct: 319 KKTLATNWRSDAALVERLQVVLLGAQLGDPAIVVDDVDTYHRGHRLAGAPRNDPFRLRVV 378

Query: 342 TDILENKIPNIQKCFSDVALIEADNERE--EAISIAIALRMSLDENKKKSALITADRNLA 399
                 +         ++      +      A+  A A         +  A+I      A
Sbjct: 379 QRETLGRSGIQNMPIDELRAHIGADVAADIRALLAARATFEGRPLQARDIAVIVEKHKDA 438

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
                 L   G+    +    +  +  +     LL A  + +    +          FG 
Sbjct: 439 AACFKALCDAGVPAVYTGDSDVFASDAAEDWLCLLEAFDQPHRPGMVRAAAAT--MFFGE 496

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
             + L+   +AL        +        + +     A Q +        ++  E     
Sbjct: 497 TAESLAAGGDALTDRVAETLREWAGHARERGVAAIFEAAQLSGMGDRVLSAQGGERHMTD 556

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
              +   + Q                   ++ DW +            E R         
Sbjct: 557 LAHIAQLLGQV---------THRERSSLPALRDWLRR---------QREERVGAPERNRR 598

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                +++    +     ++   +       R      V    +    +  L        
Sbjct: 599 LDSDAAAVQIMTVFVSKGLQYPIVYLPFAFNRNTQDRDVVLFHD--DGVRCLHIGGKDSP 656

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEMANGTRHL 697
           +F  + + G  E     +      L+R             ++  G  +            
Sbjct: 657 DFKAVEILGRKEDASDDSRLTYVALTRAQSQVVAWWSPAFDEPNGGLSRLLRGRRPGEAF 716

Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-----------LDWTRKLD 746
           +  R          A   L+     GG     ++                    + R +D
Sbjct: 717 VPDRCEPAKISDEDALDRLREWEAAGGPVIERSVVAAAPSVPPEPVPSGLDNRHFHRGID 776

Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL-KLDFIPHFKKDPDR 805
              ++  Y                S  E+ +L ++   V   +              P  
Sbjct: 777 TGWRRTSYSGLIRVTETFETTGVGSEPEVTELDDEAGDVPVAQGASGPAAPSPMADLPVG 836

Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              G+L H ++        +        +    +   +  +  P  +      +      
Sbjct: 837 AKFGSLVHAVLETADPLAADLAAELAARVRTHSVW--WPVDVPPDALAAALVPMHDTPLG 894

Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH---------------------------- 897
                    Q  +      +  +  +                                  
Sbjct: 895 PLAGGRTLRQIGLADRLRELDFEFPLAGGDAVSAGPEIRLADLGAALRTHLPADDALAPY 954

Query: 898 -----------------LTGFADRIDLLKSG---FVDITDYKT 920
                            LTG  D +  +  G      + DYKT
Sbjct: 955 AGRLLSRPLGEQPLRGYLTGSVDAVLRVPDGAARRYLVVDYKT 997


>gi|215427495|ref|ZP_03425414.1| hypothetical protein MtubT9_14339 [Mycobacterium tuberculosis T92]
 gi|289750713|ref|ZP_06510091.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289691300|gb|EFD58729.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
          Length = 174

 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 43/163 (26%), Gaps = 14/163 (8%)

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
              P         S S        P     R I +L              RG++ H  + 
Sbjct: 2   ADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPE-----ATSAAQLRGSVVHAALE 56

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENL------PPHIDIIWRHLFHKISHSFLEHE 871
           +L        +P+    + Q                  P            +   +  + 
Sbjct: 57  QLYGLPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGY--YR 114

Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914
            +  +  +        ++ +    + L G+ DRID+  +G + 
Sbjct: 115 LEDPTRFDPQCCEQRVEVELADGTL-LRGYIDRIDVAATGELR 156


>gi|307730045|ref|YP_003907269.1| exodeoxyribonuclease V subunit beta [Burkholderia sp. CCGE1003]
 gi|307584580|gb|ADN57978.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1003]
          Length = 1232

 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 80/809 (9%), Positives = 180/809 (22%), Gaps = 81/809 (10%)

Query: 210  YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
            Y+           ++      +I     + P    + S +        +    D      
Sbjct: 372  YRALAAHPWLAEALRARYPAALIDEFQDTDPLQFAIFSRIFAPAG--PLFLVGDPKQAIY 429

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             +      +      + +       +       ++      +               +  
Sbjct: 430  SFRAADLHTYLAARESASARYTLAVNQRSTAPIVEACNRIFEANPRAFVLDGLDYQPVRA 489

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA--ISIAIALRMSLD---- 383
                            + +I  +      +   EA  E  EA    I   LR + +    
Sbjct: 490  GERRRPPFSDPQAGEGDFRIWLLPPGERALTKREAQREASEACAAEIVRLLRGAREGTVA 549

Query: 384  -----ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                       A++         +K  L  +G+     A   +  T  +  +  +L A+ 
Sbjct: 550  IGDAPLAPGNIAVLVQTHKQGSLIKRVLAAWGVGSVELAQASVFATPDAEQIERVLAAVD 609

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
               D   +   +            +          VA      +  +  ++     R   
Sbjct: 610  TPGDLRRLRAALATDWLGLDAAALWRLEQVADAPAVANDPAHAADAMGWVERFSRYRTLW 669

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
             +    V  W++ + E      ++      + +T +        +          T   +
Sbjct: 670  HERGFAVM-WRTLMRELRVAQRLVAAPDGERRLTNVNHLAELVQARAATQPGIAPTLRWL 728

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI--KANAIEWIDIITRLIDGE 616
               +     E  +L         + ++   SK +E         N     +  +  +   
Sbjct: 729  AAQRAQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPSSGLPDA 788

Query: 617  TVKPKIEKSSTLF-----------ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                     + L                   +      L+   L   V+        +LS
Sbjct: 789  REYHDDGGGAVLHYGCDDEEAERAARHAAREQAAERARLVYVALTRAVYRCYLVAGTYLS 848

Query: 666  RVMQSDLNLKTAEKYIGQAAHDF--EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
                 +         +  + HDF   +A        +   +      IA   LQ L  + 
Sbjct: 849  SRSTKESRRSVLNWLVAGSGHDFDGWLAEPPDEAALSARWQALAGGPIA---LQPLPKVE 905

Query: 724  GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                 +++ + G        +     +                  T +  E  +  +D  
Sbjct: 906  RRVPLESMLESGVDKRARASRRALRDQWRMASFSGLIAAGSKAEETQAPLEEVRPDHDEL 965

Query: 784  AVYARRILKLDFIPHFKKDPDRTD------RGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            A        L      +      D      RG      +  + +     N       ++ 
Sbjct: 966  ADALAATPLLMPPSAVQTPSLAADDILGFPRGAAAGECLHRMFELADFSNPESWPDAIRG 1025

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE-----EKIQSSIEKIFVNIPAKMAIE 892
             +          P +      + HK+    ++ E        Q    +    +    A  
Sbjct: 1026 ALRE--RPAPASPELAAHLPAMMHKLLADVVDTELVDGMRLRQLDPRRRLNELEFLFAAP 1083

Query: 893  SIGIH------------------------LTGFADRIDLLKSGFVDITDYKTGDNPKKET 928
            ++                           + GF D I     G   I D+K+        
Sbjct: 1084 ALDFAALRELLVGHGYPDVALEPGMLRGFVKGFIDMIVEH-DGRFWIVDWKSNHLGDTAQ 1142

Query: 929  AQK-----------LIDPQLSLEAAALKA 946
                              Q  L   AL  
Sbjct: 1143 DYAAASLEAAMASHAYHLQALLYTVALHR 1171


>gi|254491825|ref|ZP_05105004.1| exodeoxyribonuclease V, beta subunit [Methylophaga thiooxidans
            DMS010]
 gi|224463303|gb|EEF79573.1| exodeoxyribonuclease V, beta subunit [Methylophaga thiooxydans
            DMS010]
          Length = 1164

 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 90/947 (9%), Positives = 215/947 (22%), Gaps = 153/947 (16%)

Query: 127  IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
             +  +  + L +  +      L + + + +D    E  +           +  +W  A  
Sbjct: 231  YRSDWVANWLLMLENLLQQETLPQQVFEQLDRFTRERLEPALKKGKTLPDH-PFWSHAER 289

Query: 187  FLKIASK------------------YWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
            FL+   +                  Y  + L +      +     L+    + L      
Sbjct: 290  FLQSHQQLNQCRDIALQQLRMQLANYLRQELPKRKQKLKLQAFDDLLLNLQQALHSEQGD 349

Query: 229  PII-----------IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
             ++           I     + P       TV    +G+ V    D       +      
Sbjct: 350  VLVAQIRQQFQAALIDEFQDTDPIQYDCFRTVF-ADSGSPVFFVGDPKQAIYSFRGADIF 408

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
            +       +                LD        L    N ++ +       +      
Sbjct: 409  TYLDAKQASQRE-----------FNLDTNWRSHPLLVGAVNTLFEQVEKPF-IYDDIPFY 456

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397
             ++        +   ++    +  +   ++ ++AI+    L  + +    + A +    +
Sbjct: 457  PVKAARPDTPALTLSKQALPPLEFVWVADDGDKAINKGDMLTTAANSTASQIADLMQQSS 516

Query: 398  LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
                      + G +  ++ G         S  T++  A+ +                + 
Sbjct: 517  QGEVTLT--DKEGDSRALNGGDIAVLVRSHSQATAIQQALRQRGINS----------VQQ 564

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                 + S     LE V L   K   + +   +L     A    + +       L  E  
Sbjct: 565  SRDNVFKSEQAVMLEQVLLAVAKPGNNSLIATALATPIFAKTALDIYQLQQDDSLWLEQT 624

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            +L   L D              +       +      +      + +   +      L  
Sbjct: 625  DLFQSLHD--------------SWQQDGFIVMFRRLMEQLDIQRRILQQSDGE--RQLTN 668

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                  L   ++    +        +      +                 + ++    S+
Sbjct: 669  LMHLAELVQAYASRRNSTIEAILTWLAGQRQASSAAQDMAQIRLESDEQLVKVITIHTSK 728

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVM----QSDLNLKT---------AEKYIGQA 684
             L +  +    L     PK   +  F  R                       AE      
Sbjct: 729  GLEYPIVFCPFLWHQGKPKQKPELMFFHRDETNQACVAFGEPGFSEAEPIAEAESRAEDL 788

Query: 685  AHDFEMANGTRHL-IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC------ 737
               +      R   +      +N   T     L R L         +             
Sbjct: 789  RLLYVALTRARERCVIIWGAAKNCEDTAMFGLLHRDLDTLNPAQMHSDLAELSAEHPKFI 848

Query: 738  YLDWTRKLDYTTKQPHYKRPK-----------PFPPLEAQPRTYSFSEIKQLINDPYAVY 786
             L    +                         P   + +         ++Q   D  +V 
Sbjct: 849  RLQTVNEEVENAPVKPATEVALSAREFKGRILPPWQISSFSGLTRGHHVEQPDYDADSVL 908

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            +     ++        P   + GT  H++      +            + Q   S +  +
Sbjct: 909  SEWQTPVETRHDRFGFPKGANAGTCLHSLFEHWDFQTTGDEW----QQLIQKTLSQYGID 964

Query: 847  NLPPHIDIIWRH----------------------LFHKISHSF-LEHEEKIQSSIEKIFV 883
                 +   W                           +++  F +   +  +        
Sbjct: 965  TDWTDVVEHWLPSVVSSPLSTESALTLNCISQDKRLDEMAFYFPVSQLKAQKLKTTLTGF 1024

Query: 884  --NIPA------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET------- 928
               +P       ++    +   + GF D I   + G   I DYK+     K         
Sbjct: 1025 VTEMPVLKTVLNQLNFNDVTGFMKGFIDLIFEFE-GRFYIADYKSNWLGDKAEDYDKVAL 1083

Query: 929  ----AQKLIDPQLSLEAAALKAGSFSQIDCRKV----ANLFYIRLKQ 967
                       Q  + + AL      ++           ++Y+ ++ 
Sbjct: 1084 DEAMVTHGYPLQYLIYSLALHRYLKIRLPDYDPEQHFGGVYYLFIRG 1130


>gi|241203012|ref|YP_002974108.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240856902|gb|ACS54569.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 685

 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/543 (11%), Positives = 140/543 (25%), Gaps = 61/543 (11%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAI--------QELRSEFIEITGKKSTILPIIKS 80
           TL     +  +       + +   ++RA         +  R       G  +  L    +
Sbjct: 42  TLAHRVAHLIVKGADPRRILLMTFSRRAAAEMARRVERICRDVLGANAGVMADALSWSGT 101

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
              +       D      L+P  +   R    A L+ + R+ L     +    +  +   
Sbjct: 102 FHGIGARLLR-DYAEQIGLDPGFTIHDREDS-ADLMNLIRHDLGFSKTESRFPTKGTCLA 159

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                             I +     E    L       W       L+     + E   
Sbjct: 160 ------------------IYSRAVNSETALDLVLRDVFPWCATWEKQLRELFASYVEAKQ 201

Query: 201 ELNASSPVGYQIALM----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             N        +        A     +      +++     +    A ++  +     G 
Sbjct: 202 SQNVLDYDDLLLYWAQMVGEAMIAEDIGSRFDHVLVDEYQDTNRLQASILLALKPQGQGL 261

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V+   D       +   T ++     +  +         A  +  LD      + +   
Sbjct: 262 TVV--GDDAQSIYSFRAATVRNILDFPAAFSP--------AANIVTLDRNYRSTQPILAA 311

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +N +     + S+ F     ++ ++++                 L+   +E E+A  I  
Sbjct: 312 ANAVID---LASERFTKNLWTERQSSERPR--------------LVTVRDEAEQARYITD 354

Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +  + +E    K+ A++    + +  +++ELTR  I      G+    + H   + + L
Sbjct: 355 MVLDNREEGLTLKQQAVLFRASHHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAAL 414

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                  D +A   L++          +                          +   + 
Sbjct: 415 RFAQNPRDRVAGFRLMQILPGVGPSTAQKTLDLMAEDASPITALGAMPAPPRSGEDWTMF 474

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               Q+  T    W + +    +  A  L        T        +    G  S   + 
Sbjct: 475 VAMLQELKTGKAGWPAEIGLARQWYAPHLERLHEDAATRQADLLQLEQIASGYASRERFL 534

Query: 555 KLT 557
              
Sbjct: 535 TEL 537


>gi|90424242|ref|YP_532612.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
 gi|90106256|gb|ABD88293.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
          Length = 687

 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 63/529 (11%), Positives = 142/529 (26%), Gaps = 74/529 (13%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAI--------QELRSEFIEITGKKSTILPIIKS 80
           TL     +  ++      + +   ++RA         + +R       G  S  L    +
Sbjct: 45  TLAHRVAHLLVDGADPRRLLLMTFSRRAAAEMSRRVERIVRKALGAQAGVVSDALTWAGT 104

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP----DIIKDLYPESPL 136
              +              L+P  +   R    A LI + R++L     +           
Sbjct: 105 FHGIGARLLREHAE-QLGLDPAFTIHDREDS-ADLINLVRHELGFSKMESRFPTKGTCLS 162

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
                      L   L            + + L A   E      +L  D L +    W 
Sbjct: 163 IYSRCVNAEAALDAVLGGSFPWCAGWSAELKQLFAAYVEAKQRHCVLDYDDLLLY---WA 219

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           + + +   ++ V  +                  +++     +    + ++  +   P+GA
Sbjct: 220 QAMADAGFAADVASRF---------------DHVLVDEYQDTNALQSSILLALK--PSGA 262

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            +    D       +   + ++     +        Q+S    +  LD      + + + 
Sbjct: 263 GLTVVGDDAQSIYSFRAASVRNILDFPN--------QFSPRATVVTLDRNYRSTQAILSA 314

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +N +   +       L  D +                       L+   +E ++A  I  
Sbjct: 315 ANGVIDLAKERFTKNLWTDRAAGAAPQ-----------------LVGVRDEADQARYIVE 357

Query: 377 ALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +  + +     K+ A++    + +  +++ELTR  I      G+      H   L +LL
Sbjct: 358 RVLDNREAGALLKQQAVLFRTSSHSGPLEIELTRRNIPFVKFGGLKFLDAAHIKDLLALL 417

Query: 435 NAIFKLNDFMAIATLVKH-------------PLAKFGFPEKYLSRAKNALELVALRGNKN 481
             +    D +A   L++                               A    A      
Sbjct: 418 RFVQNPRDRVAGFRLMQIIQGVGPTSAQRVLDHIAEAADPIAALSEAPAPPRAAADWRDL 477

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
              ++DL          ++          R+ E+       L+      
Sbjct: 478 VSTLLDLNRGAGWPAELERARLWYEPHLDRIHEDAITRRADLIQLEQIA 526


>gi|319949233|ref|ZP_08023317.1| ATP-dependent DNA helicase UvrD2 [Dietzia cinnamea P4]
 gi|319437100|gb|EFV92136.1| ATP-dependent DNA helicase UvrD2 [Dietzia cinnamea P4]
          Length = 695

 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 140/599 (23%), Gaps = 53/599 (8%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILP-IIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            V     T RA  ELR     +    +   P   ++         +      Y   P   
Sbjct: 50  QVLAVTFTARAAGELRMRLAGLGVADAGTGPVQARTFHSAALRNLSYFWPRVYGEEP--- 106

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    +L+      +   ++    +            I  AK+     D    +  
Sbjct: 107 --------WQLLDGQFRAVAQAVRRAGLDPATETIRDVLTEIGWAKSSLLTPDSYAEQAV 158

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
                              A    +        R+  L+    + +   L+         
Sbjct: 159 ALGR----DLPVPAPEVARAFRAYEDLKVSGPVRM--LDFDDLLSHMAELVEEVPAIAEE 212

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +      ++       PA  RL++    + +   V+   D +     +           
Sbjct: 213 FRDRYRCFVVDEFQDVTPAQQRLLTAWLGNRDDLTVV--GDVNQTIYSFAGAEPDFLLGF 270

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL--PPDTSDMR 340
           +       +P  ++ KL        + V     V     GR      +     P   +  
Sbjct: 271 ADR-----YPGATVVKLESDYRSTPQVVDLANAVIGAGAGRFRSAGLTLRGMRPPGPEPV 325

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLAR 400
             +  +          +   L+    +  E                   A++      + 
Sbjct: 326 LAEYADEDSEADAVAAAVADLVHGGTDPAE------------------IAVLYRVNAQSE 367

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
           R++  L   GI   +  G             S ++ +         +      L      
Sbjct: 368 RIEAALDEAGIGYRLKGGEGFFERPVVRRAMSAIDRLVDG--SGEASAGAHSGLTDPADV 425

Query: 461 EKYLSRAKNALELVALRGNKNSYD--IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
              + +A   L L A   +          L +LV          +            ++ 
Sbjct: 426 VAVIRQALEPLGLTAAEPSGTQARETWNSLSALVGLAEEIATAESRPGLLPVVAGLRERA 485

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD--WTKLTVTCLQNVCLDEHRKLPNLW 576
            A    D     +  +   K  +      + + +               ++E R+L  + 
Sbjct: 486 AARHAPDERGVTLASIHAAKGLEWDAVFLIGVHEGSLPISHAINAGPDAIEEERRLLYVG 545

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                + LS  +S+    G         ++D +         +   + S      G  E
Sbjct: 546 ITRAREHLSLSWSRSRRAGGRATRRPSRFLDPVRPAQAPAAARRSTDSSDKGRCRGCGE 604


>gi|261405600|ref|YP_003241841.1| recombination helicase AddA [Paenibacillus sp. Y412MC10]
 gi|261282063|gb|ACX64034.1| recombination helicase AddA [Paenibacillus sp. Y412MC10]
          Length = 1373

 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 75/754 (9%), Positives = 182/754 (24%), Gaps = 106/754 (14%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
            EL   +   R+ +  I+ +L               +  A   A ++  +       E + 
Sbjct: 308  ELQEQVKELRDNVKKIVNELKNALFGRPASEFLRELHTA---APLMMELA------ETVI 358

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
            A                      Y    L   ++          M ++A    +     +
Sbjct: 359  AFGERYREAKAAKGMVDFNDLEHYCLHILRHPDSVPGHM-----MPSDAAMEYREQFDEV 413

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            ++     +      ++  ++    G   +   D       +               +  T
Sbjct: 414  LLDEYQDTNSVQEDIVRLISREMPGNRFM-VGDVKQSIYRFRLAEPGLFLDKYKTFSSGT 472

Query: 291  HPQYSLAKL------------LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                +  ++            +D +++    +            R+ ++  +  P   ++
Sbjct: 473  GTSQTGIRIDLARNFRSRMEVVDAVNLLFRQIMNESVAEIAYDERAELVCGASFPEQETN 532

Query: 339  MRNTD-------------ILENKIPNIQKCFSDVAL----IEADNEREEAISIAIALRMS 381
                                E +          V L    +E +  + EA +IA  +R  
Sbjct: 533  GGANPYMPEMLLIDRAGKGPEEQSDESASEEDGVQLEAEALEMETAQLEARAIARKIREM 592

Query: 382  LDENKKK------------------SALITADRNLARR-VKLELTRFGINIDISAGIPLS 422
              E+ K                     ++     +    +  EL   GI           
Sbjct: 593  TGESGKPLMVYDKGLKTMRPAGYGDMVILLRSAMVWAPLIIEELRLEGIPAFGEQNKGYF 652

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA------------ 470
                  I+ SLL  I      + +A++++ P+      E    R                
Sbjct: 653  QATEVEIILSLLQVIDNPRQDIPLASVLRSPILGLSEEEMAQVRLCAKGTYYDALKAAVS 712

Query: 471  ------LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                  +   A               L     A   +        S      +  A+ + 
Sbjct: 713  LSVAPPVMDPARPMGFVDGKWTPGAGLEGLAEAAAGHELVAGSHLSDAPLTAEGHAIEIS 772

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
              +   +   +             S+SD      +    +                    
Sbjct: 773  AELGAKLGLFMDRLQRWRQEARQGSLSDLIWGIYSETGYLDWVGGLPGGRQRQGNLTALY 832

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDG-ETVKPKIEKSSTLFILGTLESRLLNFDT 643
                    +T S      + +I  +        T      + + + ++   +S+ L F  
Sbjct: 833  DRAVQYEQDTASRGLFRFLTFISRLRERGGDLGTAGGTESQGNAVRLMTIHKSKGLEFPV 892

Query: 644  LILGGLNEGVWPK-----------------NTAKNPFLSRVMQSDLNLKTAEKYIGQA-- 684
            + + GL++    +                    +   +S     +L ++   +    A  
Sbjct: 893  VFVAGLSKNFNQQDLNAPFLMHKELGFGPKFVDEGMRVSYPTLPNLAIRRRSQLELLAEE 952

Query: 685  -AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW-- 741
                +      +  +        ++P   S W  +          D +  RG+ YLDW  
Sbjct: 953  MRVLYVALTRPKEKMIL-VGTVKDLPKKVSAW-AQADFNPELLLPDYVLARGRSYLDWIG 1010

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
               + + +  P   +        ++      S+ 
Sbjct: 1011 PAVIRHPSASPLRGQAGLPEETSSRALAADRSQW 1044



 Score = 44.9 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 55/187 (29%), Gaps = 39/187 (20%)

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHI 852
                         +RGT++H I+  L  +R+  +  E    +++ I    EKE +     
Sbjct: 1170 RPKFMESTKLTPAERGTVYHTIMQHLPLQRLE-DAAEPTAEIEETIRYLVEKEIITGEQA 1228

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-------------------- 892
              +       +   F     K   S E ++  +P   A+                     
Sbjct: 1229 SAVEAAEISSL---FDCDLGKRVLSAEDVWREMPFSYALPAAEAYQGLAFLDPISEHSAQ 1285

Query: 893  ---------SIGIHLTGFADRIDLLKSGFVDITDYKTGDN----PKKETAQKLIDPQLSL 939
                        + + G  D +    +G + + DYKT                   QL L
Sbjct: 1286 GLPEMELLRDETVLIQGVVDCMFRH-NGRLVLLDYKTDRVLEHRGGLTALADQYRFQLDL 1344

Query: 940  EAAALKA 946
             A AL+ 
Sbjct: 1345 YAKALED 1351


>gi|320095653|ref|ZP_08027311.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977414|gb|EFW09099.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 525

 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/487 (10%), Positives = 124/487 (25%), Gaps = 65/487 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTAD-LLLSYNLNPPV 103
             +     T +A  E+R     + G ++  +  + +           +      + +  +
Sbjct: 77  GQILAITFTNKAAAEMRERIAALVGDEAGRM-WVSTFHSACVRILRYEHEAAGLSGSFTI 135

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            + Q    L +++L  ++            + +S                     ++ E 
Sbjct: 136 YDAQDSQRLMQMVLKAQDVDVKRFTPKMVAARVS--------------------DLKNEL 175

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAE 218
              E    +  +         +  +  A   + +RL + NA       +  +        
Sbjct: 176 IGPERYAEVAGKD------PVSRIVAAAYAEYDKRLRDSNAVDFDDLIMRTVLLLQRNPL 229

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV----LPGLDCHIPTAIWNTI 274
                      I++     +  A   L+  +    +  +V        D       +   
Sbjct: 230 IAEHYHRRFRHILVDEYQDTNHAQYVLVRELVGAGDDGVVPAELTVVGDSDQSIYAFRGA 289

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
           T ++      +   +             L+      + + + +N +  R+       L  
Sbjct: 290 TIRNIEEFERDFPGARTIL---------LEQNYRSTQNILSAANAVISRNQGRRPKNLWT 340

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALI 392
              D                  + + +  AD+E +EA  +   +    D        A+ 
Sbjct: 341 QEGDG-----------------APITVDAADSEYDEARFVVSEIDRVADAGADWGDIAVF 383

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R ++  L R GI   +  G             + L  +   +D +A   ++  
Sbjct: 384 YRTNAQSRALEELLVRQGIPYRVVGGTRFYERREIKDALAYLQVVSNPDDTVAARRVINL 443

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P    G   +    A  A   V+         I   + L                     
Sbjct: 444 PKRGIGAKAEEAIAAHAARHGVSFGRALAHLWIRQGRPLGEGEGVDIAALVRHGGETGAP 503

Query: 513 SEEDKEL 519
           S  D   
Sbjct: 504 SSADGGA 510


>gi|290476676|ref|YP_003469581.1| exonuclease V subunit beta [Xenorhabdus bovienii SS-2004]
 gi|289176014|emb|CBJ82817.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
            ATPase, recombinase, helicase [Xenorhabdus bovienii
            SS-2004]
          Length = 1205

 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 92/885 (10%), Positives = 216/885 (24%), Gaps = 123/885 (13%)

Query: 203  NASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVA-------N 251
                 +    + ++ E        ++      +I     + P   R+   +         
Sbjct: 353  GFDDLLTRLDSALQREGGKQLATTIRQRYPVAMIDEFQDTDPQQYRIFQAIYCDQPENEQ 412

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK-LLDFLDIKREDV 310
              NG + +   D       +      +     S  +      Y+L       + + +   
Sbjct: 413  RENGLMFI--GDPKQAIYAFRGADIFTYIRARSQVSAH----YTLETNWRSSVPMVQAVN 466

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
            K   +         +            ++R     + +            + +   E+  
Sbjct: 467  KLFSHTERPFLFSQIPFINVKAAEKNHNLRFLFHHQEQAALQFWLQPGEGVAKGGYEQSM 526

Query: 371  AISIAIALRMSLDENKK-----------------KSALITADRNLARRVKLELTRFGIN- 412
            A   A  +R  L   ++                    ++  +R  A  ++ EL    I  
Sbjct: 527  ARHCAAQIRDWLLAGQQGQALLQQAEKSQPVTAADITVLVRNRREAAMIRDELNALKIPS 586

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            + +S    +  T  +  L  LL A+        + + +   L      +           
Sbjct: 587  VFLSNRDSVFDTPEAKDLLWLLQAVLSPEKERELRSALASSLFGLSAQQIDQLNHDETAW 646

Query: 473  LVALRGNKNSYDIMDLKSLVLDR-------------------IATQKNNTHVPHWQSRLS 513
               +        +   + ++                           +  H+       S
Sbjct: 647  DHLVDEFSGYARLWRSRGVLPMLRAVMVKYQVAENLLAGYDGERRLTDVMHIGELLQETS 706

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT--------CLQNVC 565
             +      ++     Q   P    +T +     +  +     +  +        CL  +C
Sbjct: 707  LQLDSEHAVVRWLAQQISRPDPQSETQQMRLESDKHLVQICTIHKSKGLEYPLVCLPFIC 766

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                ++       +  +T  S+F    +     +    E + ++   +        +  +
Sbjct: 767  SFRKQEQAIYHDRQSFETHFSIFQDDEKKALADEERLAEDLRLLYVALTRSIYHCSVGVA 826

Query: 626  STLF----ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
              +       G  +  L     L+  G          + N   +  +Q  L  +T +   
Sbjct: 827  PLIQGNKKKAGNTDLHLSALGYLLQKGQQGDAQLLADSLNELSNDDIQVTLMEETDDVQW 886

Query: 682  --------GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
                      AA  F  +      + + S  + +     S  +         +  D + +
Sbjct: 887  CSQNNNDSLLAARKFRRSIQDDWRVTSYSGLQYSS----SHSISHAYTSAFGESVDVIVQ 942

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY-SFSEIKQLINDPYAVYARRILK 792
                 LD   + +   +      P  FP   +      S  E       P  V+    L 
Sbjct: 943  SIAPKLDIDARGEKQEEPSSQMTPHTFPRGASAGTFLHSILEDLDFSELPEQVWLAEKLT 1002

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPP 850
                        +          + E   +  N    +    M+  +  D       L  
Sbjct: 1003 AAGFDENWAPVLQQWIADFVTAELDEQGIQLANVPRHQQQSEMQFYLPVDKLLHSHALSA 1062

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
                                 + + +    +  +    M        L GF D +   + 
Sbjct: 1063 LTRRY----------------DPLSAQCAPLSFHQVKGM--------LKGFIDLVFCWQ- 1097

Query: 911  GFVDITDYK-----------TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CR 955
            G   + DYK           T +   K   +   D Q  L   AL      ++      +
Sbjct: 1098 GKFYVVDYKSNWLGESSQSYTQEAMAKAMIEHRYDLQYQLYTLALHRYLRHRLVNYDYQQ 1157

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
                + Y+ L+   K +      +   + E  ++ L  L      
Sbjct: 1158 HFGGVIYLFLRGIDKANPGHGVYRYLPSIEFVDE-LDRLFSAAGE 1201


>gi|186476506|ref|YP_001857976.1| exodeoxyribonuclease V subunit beta [Burkholderia phymatum STM815]
 gi|184192965|gb|ACC70930.1| exodeoxyribonuclease V, beta subunit [Burkholderia phymatum STM815]
          Length = 1241

 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 93/858 (10%), Positives = 205/858 (23%), Gaps = 76/858 (8%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPI 230
            +   W  L   +L  A    T R       S       L RA A H      ++      
Sbjct: 337  QRARWLGLVQAWLDYAPHELTTRKRSRRVVSFDDLLSNLHRALATHVWLADALRARYPAA 396

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            +I     + P    + + +        +    D       +      +     +  +   
Sbjct: 397  LIDEFQDTDPLQFAIFNRIFAPKG--PLFLVGDPKQAIYSFRAADLHTYLAARAKASARY 454

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP-PDTSDMRNTDILENKI 349
                +       ++      +               +       P   D   T   + + 
Sbjct: 455  TLAVNQRSTAPVVEACNRFFEANPKAFVLEGLDYQPVRAGERQRPPLIDRDGTAGGDFRA 514

Query: 350  PNIQKCFSDVALIEADNEREEA--ISIAIALRMSLDEN---------KKKSALITADRNL 398
              + +  + +   +A     EA    I   LR + + +             A++      
Sbjct: 515  WMLPQGDAALIKRDAQRAASEACAAEIVRLLRGAREGHVTIGDKPLAPGNIAVLVQTHKQ 574

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
               +K  L+ +G+     A   +  +L +  +  +L A+    D   +   +        
Sbjct: 575  GSLIKRVLSAWGVGSVELAQASVFESLDAEQIERVLAAVDTPGDLRRLRAALACDWFGLD 634

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                +           A    +    +  ++     R+   +    V  W++ + E    
Sbjct: 635  AASLWRLEHLAESTPAAGELTQTVDAMGWVERFSRYRMLWHERGFAVM-WRTLMRELHVA 693

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
              ++      + +T L        +          T   +   +            L  +
Sbjct: 694  QRIVAGAEGERRLTNLNHLAELLQARAATRPGIAPTLRWIAAQREGAGGGEEAQLRLESD 753

Query: 579  EEGKTLSSLF-----------------------------SKIIETGSCIKANAIEWIDII 609
                 + ++                                         A      D  
Sbjct: 754  RNLVQIVTVHKSKGLEYAVVFCPFLNDGAMREPHPSGLPDAREYHDDGGTAVLHYGCDEE 813

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA---KNPFLSR 666
               +       +        I   L   +     +    L+     ++            
Sbjct: 814  QADLASRQATREQAAERARLIYVALTRAVYRCYVVAGTYLSARSTKESARSVLNWLVAGN 873

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT--RSLRENNIPTIASRWLQRLLVLGG 724
              + D  L    +      H   +A G   +        RE       S    R      
Sbjct: 874  AREFDEWLAKPLEEGAIYRHWQALAGGPVTVAGLPPVVRREPLESVTDSGVRLRARANRR 933

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
            +             +    + D T       +  +P     A   + S + +  +   P 
Sbjct: 934  SLREAWRMTSFSSLIAAGSRTDETSASNAVNEEARPDHDELADLPSVSNAPVFDVAAAPV 993

Query: 784  AVYARRILKLDFIPHFKKDP-------DRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
             + A  IL     P   +         D +D GT  H I    + +R     PE+   + 
Sbjct: 994  ELAADDILSFPRGPAAGECLHRMFELADFSDPGTWPHAI-ERALHERPAPAEPELAQRLP 1052

Query: 837  QIIDSHFE-----KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-KMA 890
             ++          +      +  +                     ++  + V      +A
Sbjct: 1053 AMMQRLLADIVSTELVPGMTLAALDPKRRLNELEFLFSAASLDFPALRALLVGHGYPDVA 1112

Query: 891  IESIGIH--LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948
            +++  +   + GF D I   + G   + D+K+        +         LE A      
Sbjct: 1113 LDAGALRGFVKGFIDMIVEHQ-GRFWVIDWKSNHLGDTRESYASE----PLEEAMASHAY 1167

Query: 949  FSQIDCRKVANLFYIRLK 966
              Q     VA   Y+RL+
Sbjct: 1168 HLQALLYTVALHRYLRLR 1185


>gi|221369980|ref|YP_002521076.1| ATP-dependent DNA helicase [Rhodobacter sphaeroides KD131]
 gi|221163032|gb|ACM04003.1| ATP-dependent DNA helicase [Rhodobacter sphaeroides KD131]
          Length = 679

 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/536 (10%), Positives = 134/536 (25%), Gaps = 63/536 (11%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELR---SEFIEITGKKSTILPIIK---SLG 82
           TL     +  +       + +   ++RA  EL             ++     +    +  
Sbjct: 41  TLAHRVAHLLVKGADPRRILLMTFSRRAAAELTRRVERITRHALGQAHAAEALTWAGTFH 100

Query: 83  DVVEEKFTADLLL-SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            +       +  L   N +  + + +   +L  L+           +     + L++   
Sbjct: 101 GIGARILRENAALIGLNPDFTIHDREDSADLMNLVRHGLGLSKTESRFPAKGTCLAIYSR 160

Query: 142 PANA-IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
             NA   LA  L                           W       L+     +     
Sbjct: 161 AVNAEEPLADVLRAHF----------------------PWCAAWEGELRRLFSGYVAAKQ 198

Query: 201 ELNASSPVGYQIALMRAEAEHLMK----GTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             N        +A  +  AE             ++I     +    AR++  +   P+G 
Sbjct: 199 AQNVLDYDDLLLAWAQVMAEPAFAAHLGAAWDHVLIDEYQDTNRLQARILLALK--PDGR 256

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            +    D       +   T ++     +      H        +  LD        +   
Sbjct: 257 GLTVVGDDAQAIYAFRAATVRNILDFPAAFAPPAH--------VVTLDRNYRSTAPILAA 308

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           +N +  R+                  +     +   +       L+    E ++A     
Sbjct: 309 ANRVIERAA-----------------ERFTKDLWTERASAEKPRLVTLATEADQARFFVD 351

Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +  + +E    K  A++    + + ++++ELTR  +      G+    + H   L ++L
Sbjct: 352 EVLRNREEGMRLKDQAVLFRTSSHSGQIEVELTRRNVPFVKFGGLKFLDSAHVKDLLAIL 411

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                  D +A   +++               A  A         +              
Sbjct: 412 RFAQNPRDRVAGFRVLQLVPGVGPASAGRALEALAAAADPLAALARLRPPPRAGADWTAL 471

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
             A  +  +  P   ++     +     L +        L+  +            
Sbjct: 472 AEALPRLGSDWPAGLAQARAWYEPQLDRLHEDAEVRRADLLQLEQIAAGYPSRERF 527


>gi|282866614|ref|ZP_06275656.1| UvrD/REP helicase [Streptomyces sp. ACTE]
 gi|282558516|gb|EFB64076.1| UvrD/REP helicase [Streptomyces sp. ACTE]
          Length = 799

 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/590 (9%), Positives = 133/590 (22%), Gaps = 65/590 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           A+V     T RA  ELR    ++           ++       +              V 
Sbjct: 126 ATVLAVTFTNRAAGELRGRLRQLGATGV----QARTFHSAALRQLQYFW------PKAVG 175

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                 EL RL+      + +           +      + I  AK    +         
Sbjct: 176 G-----ELPRLVERKVQLVAEAAARCGIRLDRNELRDATSEIEWAKVTQTV--------- 221

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
              D  A   +         A+ L      + +   E +        +  +    +    
Sbjct: 222 -PADYPAAVAKTQRDAPRDPAE-LSQIYSAYEQLKRERSVIDFEDVLLLTVGILQDRHDI 279

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +      ++       P   RL+       +   V+   D       +   T +  
Sbjct: 280 ADHVRRQYQHFVVDEYQDVSPLQQRLLDLWLGDRDDLCVV--GDASQTIYSFTGATPEHL 337

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
               +      HPQ ++ KL+       + V     + ++  GR+               
Sbjct: 338 LNFRTR-----HPQATVVKLVRDYRSTPQVVHLANGLLSQARGRAA-------------- 378

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSALITADRN 397
                   ++ + ++   +    E  +E  EA   A  +R   +      + A++    +
Sbjct: 379 ----EHRLELVSQREKGPEPVFTEYPDEPAEAEGTARRVRDLIAAGVPAGEIAVLYRVNS 434

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +   +  L   G+   +                  L    +      +           
Sbjct: 435 QSEVYEQALADAGVPYQLRGAERFFDRAEVREAGVALRGAARAGGNDPLLD-------GA 487

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                 +    +           +       +SL       +      P         + 
Sbjct: 488 DDLPAEVRAVLSTKGWTTTPPAGSGAVRDRWESLAALVRLAEDFEQARPGATLSDLVAEL 547

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +               L +  + K        +   T+  +        ++  +   L +
Sbjct: 548 DERAAAQHAPTVQGVTLASLHSAKGLEWDAAFLVGMTEGMMPIAYAKTDEQVEEERRLLY 607

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
               +    L        S     +      +  L  G T       +  
Sbjct: 608 VGVTRARFHLSLSWALARSPGGRASRRPTRFLNGLRPGSTAHGVRSGAGG 657


>gi|302542682|ref|ZP_07295024.1| putative ATP-dependent DNA helicase PcrA [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460300|gb|EFL23393.1| putative ATP-dependent DNA helicase PcrA [Streptomyces
           himastatinicus ATCC 53653]
          Length = 733

 Score = 56.5 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/670 (8%), Positives = 142/670 (21%), Gaps = 90/670 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           ASV     T RA  E+R    ++           ++                        
Sbjct: 50  ASVLAVTFTNRAAGEMRGRLRQLGAGGV----QARTFHSAA------------------- 86

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN--AIWLAKNLADIIDIIETE 162
                  L +L   W   +   +  L       +  + A          L D+   IE  
Sbjct: 87  -------LRQLQYFWPKAVGGDVPRLAERKVQLVAEAAARCRVRLDRNELRDVTGEIEWS 139

Query: 163 EKK---WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
           +      ED  A   +         A+ +      + +   +          +  +    
Sbjct: 140 KVTQTVPEDYPAAAAKHGREAPRDPAE-IGRIYAGYEQLKRDRGVIDFEDVLLLTVGVLE 198

Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           E        +      ++       P   RL+           V+   D       +   
Sbjct: 199 ERPDIADQVRRQYQHFVVDEYQDVSPLQQRLLELWLGDRQSLCVV--GDASQTIYSFTGA 256

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
           T        +      HP  ++ KL+       + V     + ++  GR+          
Sbjct: 257 TPDHLLDFRTR-----HPGATVVKLIRDYRSTPQVVHLANGLLSQARGRAA--------- 302

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--------NK 386
                        ++ + +    +       +E  EA + A  +R  +            
Sbjct: 303 ---------EHRLELVSQRDAGPEPVYTAYADEPAEAEATARRIRELITPVAQGGAGVPP 353

Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
            + A++      +   +  L    +   +                 LL    +      +
Sbjct: 354 SQVAVLYRVNAQSELYEQALADAEVPYQLRGAERFFERPEVREAGMLLRGAARAGSADPV 413

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            +    P                   ++  RG                            
Sbjct: 414 LSDDDIP--------------SQVRAVLGTRGWTPEPPAGSGAVRDRWESLAALVRLAED 459

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTY--KTNKNSTCGNLSISDWTKLTVTCLQNV 564
             + R      +L   L +       P V      + ++  G    + +       +  +
Sbjct: 460 FARGRPGATLSDLVAELDERAAAQHAPTVEGVTLASLHAAKGLEWDAVFLVGLTEGMMPI 519

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
              +  +            ++     +  + +  +A         TR ++G         
Sbjct: 520 TYAKTDQQIEEERRLLYVGVTRARRHLSLSWALSRAPGGRASRRPTRFLNGLRPGSAAPA 579

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           +      G +E        +                       +    +  +        
Sbjct: 580 ARMPGGGGGIERGTGPSAPVRKRRTPVHCRVCGRTLTDAGEMKLMRCEDCPSELDEALYE 639

Query: 685 AHDFEMANGT 694
                 A   
Sbjct: 640 RLHDWRAEQA 649


>gi|251771292|gb|EES51873.1| conserved protein of unknown function [Leptospirillum
            ferrodiazotrophum]
          Length = 321

 Score = 56.5 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 80/288 (27%), Gaps = 56/288 (19%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR------------TDRGTLFHNI 815
             +YS S        P   +  R               R               G   H+ 
Sbjct: 8    FSYSHSRGDLFRECPRRYWFARYGGWGGWERSADPVTREIYRLGKLSNRYLWTGHHVHDR 67

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID---------------------- 853
            +  LI +   K         +  +     +E      D                      
Sbjct: 68   VEGLIARIAEKRPLPPEEEERTALLDTLRREYAHSKKDRSGHNPPRKGFWGLLEHEGRDF 127

Query: 854  ----IIWRHLFHKISHS-------FLEHEEKIQSSIEKIFVNIPAK---MAIESIGIHLT 899
                  W+ L  +   +       ++  E       + +  +   +   + ++   + + 
Sbjct: 128  SIPDADWKPLVERAGEALGGFYRSWVLPELVSADPGDILDRDAELRTISLDVDGFEVPVH 187

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959
               D    L  G V + D+KTG     +  +     QL+L A          +D  ++  
Sbjct: 188  MKIDLAYRLHDGTVRVVDWKTGRPGSPDEHEG----QLALYAWYYAKARGIPLDRIRLGP 243

Query: 960  LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
            ++     ++ ++  ++ D    + D +  ++   + EI+ L+ +    
Sbjct: 244  VYLAHRPERVELQPVSPD----TVDRVLGETRDTIREILALVDDPNLG 287


>gi|283852071|ref|ZP_06369345.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
 gi|283572461|gb|EFC20447.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
          Length = 1062

 Score = 56.5 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 80/731 (10%), Positives = 170/731 (23%), Gaps = 86/731 (11%)

Query: 229  PIIIAGSTGSIPATARLMS--TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             I+I     +      ++   +V     G  +    D       W        +   ++ 
Sbjct: 363  HILIDEFQDTSRTQWDVLRLLSVECLARGGSLYLVGDVKQAIYGWRGGDAALFDAAPADA 422

Query: 287  T----YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP--------- 333
                      Q          ++   + +    +++    R +  +              
Sbjct: 423  ELSRIAEVIRQTLPVNWRSAPEVVAANNRFFAPLADPAKAREVAAALLGPQLQAAVPELA 482

Query: 334  -------PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
                    D S     D                +  E D    EA+   +   +      
Sbjct: 483  GMLSRAFADASQSLPPDRSGPAGHVRVTALPAASSGEYDAAAREALVRLLRTELLPRHGP 542

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
               A++T     A RV   L   G+ +     + L+       L ++L  +    D ++ 
Sbjct: 543  AGVAVLTRSNPQAARVATWLIEAGMPVVTENSLRLADHPLIRQLAAMLAFLDYPPDSLSF 602

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
               V              +     L  +  RG         L     DR          P
Sbjct: 603  WAFVSGQELFGDLSGISRTELAEWLCRLPRRG--------SLSLAFRDRWPEAWTRFIRP 654

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
            + +        +L   +V         L     ++      L I+   +       +  L
Sbjct: 655  YLRQTGLAAPYDLLREIV----TGYGLLTRRPGDEAFLRRFLEIAHLAESRGRTSISAFL 710

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
            D        ++ E G        + +E    +  +  + +     ++       +  ++ 
Sbjct: 711  D--------FWRELGDDEKVPQPENVEAVRVLTMHKAKGLQFPAVVVPFHHFSGRTGEAP 762

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             +                    L EG                +    L        +  H
Sbjct: 763  LVT-----------------ATLEEGEVLAPDLPGLGPDHARRRAHEL-------AEQVH 798

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
               +A     +     +  +      +R+     +      F      G+        L 
Sbjct: 799  LLYVAWTRPEVELHAFVPGHGKLREDARYPLPKALALLFAAFGQDPADGEPIR--LGDLP 856

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                 P      P PP        S           Y   AR I                
Sbjct: 857  DLPPPPPRACAAPLPPPAGGAEAVSPPMAWLPRLKVYRNVARDIRD-------SLRFSEK 909

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
             RG L H       +   +   PE +   ++ + +    E L   +       F  +   
Sbjct: 910  RRGELAHLAAEGFARAGFDPAAPEPDA--RRAVLTALGGERLDAGLRSSLTREFTDMLVW 967

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG--DNP 924
                 +  ++ +   F      +  +   +      D +    +  V + D+KTG     
Sbjct: 968  LAGLPQCREA-LAAGFCEREL-LTDDGERL----RPDLLFCGPAETV-VIDFKTGHAQPE 1020

Query: 925  KKETAQKLIDP 935
                  + +D 
Sbjct: 1021 HVAQVARYLDL 1031


>gi|167035662|ref|YP_001670893.1| exodeoxyribonuclease V subunit beta [Pseudomonas putida GB-1]
 gi|166862150|gb|ABZ00558.1| exodeoxyribonuclease V, beta subunit [Pseudomonas putida GB-1]
          Length = 1224

 Score = 56.5 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 99/997 (9%), Positives = 227/997 (22%), Gaps = 101/997 (10%)

Query: 69   GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK 128
            G    +LP I+ L   V  +       +          ++L  L      W  +L  I +
Sbjct: 189  GSPDALLPRIRPLFGRVRAQQDGPEPAALIQASLQQRGEQLARLKAPWAQWAEQLRQICR 248

Query: 129  D-LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED-LHALKNEKYGMWW----- 181
            D L  +      +           L       +  +         L        W     
Sbjct: 249  DALAAKQVDGRKMQARYFEPWFDKLCAWAGDEQLVDLDLGTGFTRLTPAGMAEAWKGEPP 308

Query: 182  --------------------------LLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
                                        AA ++    +    R  E+     +      +
Sbjct: 309  EHPGLNAMQSLQQQLQALDSPDAPLLEHAASWVSARFEVEKRRRAEMGFDDMLVRLQHAL 368

Query: 216  RAEA----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPT 268
             +EA      L++      +I     + P    +   +           +    D     
Sbjct: 369  ASEAGERLAGLIREQFPVALIDEFQDTDPVQYGIFERIYQISENRADTGLFMIGDPKQAI 428

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV--SNEMYGRSMV 326
              +      +       T    H   +  +    +      V     V  +         
Sbjct: 429  YAFRGADIYTYLAARRATRDRLHSLDTNYRSSKAMVAAVNQVFLQAEVRETGRGAFLFRA 488

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL-----IEADNEREEAISIAIALRMS 381
               + LP      +                    L     + +   R++  +   +  ++
Sbjct: 489  ADDNPLPFIEVRAKGRGEQLLIDGETSAALQCWQLESEEAVSSSVYRQQLAASCASHIVA 548

Query: 382  LDENKK-------------------KSALITADRNLARRVKLELT-RFGINIDISAGIPL 421
            L    +                     A++  D + A+ V+ EL  R   ++ +S    +
Sbjct: 549  LLNGGQQGTAGFQNAEGELRPCLPSDIAILVRDGHEAQVVRAELAARDVRSVYLSDKDSV 608

Query: 422  STTLHSSILTSLLNAIFKLNDFM---AIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
                 +  L + L A  + +      A    +   L+     +           ++  R 
Sbjct: 609  FAAQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLAALDQLNQDERVWEGWVMRFRH 668

Query: 479  NKNSYDIMDLKSLVLDRIAT--QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
             ++++    +  ++   +                R+      LA LL     +       
Sbjct: 669  YRDTWQRQGVLPMLRHLLHDFQLPRTLIRRSDGERVLTNLLHLAELLQQAAGELDGEQAL 728

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
             +        +    +   L +   + +                        SK ++   
Sbjct: 729  IRHLAEHLANSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYLPFICTSKPVDGSR 788

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
               A      +    L   +    + +       L  L   L         G+ +     
Sbjct: 789  LPLAWHDSEGNAHLTLTPDQEQIERADDERLAEDLRLLYVALTRAQHACWLGVADLKRGN 848

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI---YTRSLRENNIPTIAS 713
              +     S +                      +A+   H+      ++  +      A 
Sbjct: 849  QKSSQLHRSALGYLLGGGLALTGSQQLTDWLQALASTCPHITCPGLPQANEQAYRVPHAE 908

Query: 714  RWLQ--RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            R L   R       + +           D T   D +  Q      +       +     
Sbjct: 909  RELLPARKPRRAAAEHWWIASYSALRVGDQTLGADSSQAQQLL-DDEAVDAQVLREVPAD 967

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
              +I +    P        L                +  +   +     ++      P +
Sbjct: 968  SGDIHRFPRGPNPGTFLHGLLEWAGREGFSQVSGNPQ-LIERTVGQRCNRRDWTGWIPTL 1026

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE---EKIQSSIEKIFVNIPAK 888
            +  M++++            + +   H +      +        +    +     +    
Sbjct: 1027 SQWMQRLLGEALPLPGSDQSVMLGQLHHYQIEMEFWFASHQVDAEQLDRLVARHTHPGLA 1086

Query: 889  MAIESIGIH---LTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLID 934
                   +      GF D    L  G   +TDYK+               +K   +   D
Sbjct: 1087 RPAAQPTVLNGMFKGFIDLAFEL-DGRYYVTDYKSNWLGPDIQAYDTQTMEKAIIEHRYD 1145

Query: 935  PQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
             Q  L   AL     +++      R V    +I L+ 
Sbjct: 1146 LQYVLYLLALHRQLRARLPDYDYDRHVGGALFIFLRG 1182


>gi|116619175|ref|YP_821331.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076]
 gi|116222337|gb|ABJ81046.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1088

 Score = 56.5 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 105/975 (10%), Positives = 220/975 (22%), Gaps = 163/975 (16%)

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
              + L ++ +  +       ++         R   +ARL+      L    +        
Sbjct: 159  RTEPLEELRKAAWNLTEWRDFDAAWQKRPFDRDARMARLLDKAEATLRVGGRKESLRPLG 218

Query: 137  SLPISPANAIWLAK--------NLADIIDIIE------TEEKKWEDLHALKNE----KYG 178
                    A    +        +L  +   +            WE+L A   E       
Sbjct: 219  EFVERVRRAREAGRLDGDRVESDLLRLPAELRWVKGKDAAVAAWEELRAAIEEFRCEADA 278

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSP----VGYQIALMRAEAEHLMKGTKGPIIIAG 234
                   D L     ++ E              +  +  L    A   ++     I +  
Sbjct: 279  DLAAHLRDELWEVVGHYQEEKRRAGQLDFMDLLLCARELLRHDGARADLQRVYQRIFVDE 338

Query: 235  STGSIPATARLMSTVAN-----------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
               + P  A ++  +A+            P    +    D       +     +  +   
Sbjct: 339  FQDTDPLQAEILLLLASGDAAERDWRKVTPAPGKLYVVGDPKQSIYRFRRADARLFHRVC 398

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            S+       +  L          R        V+                 +  + + + 
Sbjct: 399  SDLLAGGVAERKLTS------STRSTAAIQSFVNAAFERSIENYLPLEGGVEAPEGQPSV 452

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS-LDENKKKSALITADRNLARRV 402
            +                 I+A +    A  I      S      +    +         +
Sbjct: 453  VALPMPEPYGSRNISNVKIDACSPDAVAGFIQWLCNESGWKVRDRSRGWVPVRPEHVCIL 512

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                T +G ++       L     + +L                   V            
Sbjct: 513  FRRFTNYGTDLTQEYVRCLEARGIAHLL-------------------VGSKSFHRREEVG 553

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
             L  A  A+E      +  +     L +++ D +   KN     H    L EE  E    
Sbjct: 554  TLRTALRAVEWPDDELSVFAVLRGSLFAVMDDVLLRFKNAHGGFHPMKELPEELDEEFAP 613

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            + +             +  +       ++D     +   +       RK          +
Sbjct: 614  IAEAFG--------ILSELHRRRNFRPLADTIHELLEKTRAHAGFAFRKGGERVLANVYR 665

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
                  S  +   +    + +E+++      D        ++   + ++   +++ L F 
Sbjct: 666  LTDLARSFEVSGAATSFRSFVEYLEAEYDGSDTSEAPVLEQEGGGVQLMTVHKAKGLEFP 725

Query: 643  TLILGGLNEGV--------------WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +IL  L   +                            +     L+            +
Sbjct: 726  VVILADLTAKLTGPQGADRYSEPELRLCAQRLLWCAPWELVDAAELEAKADEEEALRVAY 785

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL--- 745
              A   R L+   +L E          L   L      + ++ +  G     W+  L   
Sbjct: 786  VAATRARDLLVVAALGEEEREGGWLSPLHEALYPEKERWRNSEEAPGCPPFGWSTVLNRP 845

Query: 746  ----DYTTKQPHYKRPKPFPPLEAQPRTY--------------------SFSEIKQLIND 781
                +  + +P   RPK                                +  +    +  
Sbjct: 846  PEYEEEVSVKPGLHRPKAGGHGVVWFDPLVAKRGAVSTEGVENEQVLNGTAQQAADGLRV 905

Query: 782  PYAVYARRILKLDF-----------------------------IPHFKKDPDRTDRGTLF 812
                  +R  ++                               +P     P     G + 
Sbjct: 906  YEEWRGKRAARIAEGGVPRIRTKVAQSVSRADEAAGIVVETVTLPGVAGRPGGRKFGLVV 965

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
            H I+         ++  EI  L       H   E                I         
Sbjct: 966  HEILQR------AESADEIAGLAAVWGRRHGASEPEIAAAGEAALAALAAIV-------- 1011

Query: 873  KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF-VDITDYKTGDNPKKETAQK 931
                   K +  +P  + +E   I + G  D       G    + DYKT         +K
Sbjct: 1012 --VPEGAKRYREMPVMVRLEDGTI-VDGRVDC--AWSDGTQWVVIDYKTDR------REK 1060

Query: 932  LIDPQLSLEAAALKA 946
                Q+ L   AL+ 
Sbjct: 1061 RNVAQVQLYGLALQR 1075


>gi|222476125|ref|YP_002564646.1| hypothetical protein Hlac_3229 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222454496|gb|ACM58760.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 862

 Score = 56.5 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/486 (9%), Positives = 114/486 (23%), Gaps = 75/486 (15%)

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVT 559
           ++        +L          L++ I   +  L +             + +        
Sbjct: 232 SDLAEHRAFLQLLRTAFRGTETLIEEIRPLLATLNIDLDIAHEEKRLYQTEAPELVWLTD 291

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
             +        +    + +     L +   ++       +      +D ++  +    V 
Sbjct: 292 FCRKAETYTFGEALTAFKKRANCELETFRDELDTLSIANEPVTEHGVDQLSFYLQSYEV- 350

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
           P   ++  + +     +  +  D +   GL+E        +     +   +         
Sbjct: 351 PVNRENEGVLLADAKSAAFVGRDVVFFLGLDEDWTHSPPRRPWVDQQAQYTR-------- 402

Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                     + +G++     ++      P     + + L         +    R     
Sbjct: 403 --NIQGFQLLLQSGSKQHYLVQN-STGGSPVTPCLYFEEL--------LEQEYDRFSDLP 451

Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
             T       + P                T S S +   +N P   Y  R+++     +F
Sbjct: 452 STTHSQRSDLETPTAFEKTSASVSTESVETISQSSLSTYVNSPRDYYFSRLVESPDKDYF 511

Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH--FEKENLPPHIDIIWR 857
            +       G LFH+     +      ++  I   ++ +++      +          +R
Sbjct: 512 TE-------GNLFHDFAEFYVNHPEFVDSTVIEETVEFMLEEARPLMRSVDEETRRTEYR 564

Query: 858 HLFHKISHSFLEHEEKIQSSIEKI-------------------FVNIPAKMAIESIGIHL 898
                I      +     S +                                ++  + +
Sbjct: 565 IGLKTIIFHLGANPPTDDSFLTPSTGRGTNIIADYFDRTVDSPVTERRF----DAEDLGI 620

Query: 899 TGFAD----RIDLLKSGFVDITDYKTGDNPKKETAQKLID---------PQLSLEAAALK 945
            G  D    RI L         D+K+G         K             Q  L      
Sbjct: 621 NGVIDLVQSRIQLT--------DFKSGSKKSARDVVKHSSVDDPTDEPNFQALLY-LTYW 671

Query: 946 AGSFSQ 951
              F  
Sbjct: 672 RSKFPD 677


>gi|188995913|ref|YP_001930165.1| ATP-dependent helicase [Porphyromonas gingivalis ATCC 33277]
 gi|188595593|dbj|BAG34568.1| ATP-dependent helicase [Porphyromonas gingivalis ATCC 33277]
          Length = 1074

 Score = 56.5 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 79/785 (10%), Positives = 190/785 (24%), Gaps = 92/785 (11%)

Query: 169  LHALKNEKYGMWWLLA---------ADFLKIASKYWTERLVELNASSPVGYQIA--LMRA 217
            L  +     G  W             + L I S  W +        + +    A  L+  
Sbjct: 314  LTEMAALYLGREWQEYSTAKQSLPFLNRLGIISDLWRQIEGIRQEENKMLISDAPSLLHR 373

Query: 218  EAEHLMKG--------TKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIP 267
              +                  +I     +          +   +  +G   L   D    
Sbjct: 374  IIDGSETPFVYDKIGVRIEHEMIDEFQDTSSLQYENFKPLLSESLAHGKYNLLVGDAKQS 433

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               +     +      S     T  + +L           E    L           ++ 
Sbjct: 434  IYRFRNADRRLLTEVVSRDFAETSERVNLPYNWRSTPEIIEFNNSLYKHLP-----QILC 488

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
                   +T  M +  + E       + ++DV  +                  +  +   
Sbjct: 489  EAMTREAETMAMPDPKLPEEINRTFMQTYADVEQLVPP---------------AKVDRHG 533

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
               +       +   +  L+             L           ++    +      IA
Sbjct: 534  SVCIYLPSPASSEEAEANLSWEE--------QILQDLP-----RFIIGLQKRGYAPSDIA 580

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             LV+                  A+       ++  Y ++ +    L           + +
Sbjct: 581  ILVRKTY--------QAREIARAMLSYQPEPDEEDYPLIPMSDESLSLSGAASIR-FLSN 631

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                +S    +    +     + +         +        ++++  L    L  +   
Sbjct: 632  LLKFISRPQSDALRQIAYLSYEELRKEKGLAPTEEGNFSAAELAEFANLRRRSLYELAEG 691

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                  +   E E   L +    I + G    A+   ++         ++       S  
Sbjct: 692  LVSFFHSYLPEREMPYLIAWLDLINDFGHERSADLHSFLQWWDETGHAKSRISSAPNSQA 751

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL--SRVMQSDLNLKT--AEKYIGQ 683
            + ++   +++ L F  +++  L+  +  +   ++         +S  N+      +Y  +
Sbjct: 752  VTLMTIHKAKGLGFRVVLIPFLDWNLDDEAAHRHILWCKIDPARSPFNILPVVPIRYKKE 811

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
             A     A+  R          N +    +R    + +                 +    
Sbjct: 812  MAQTMFAADYFRERADILLDNLNLLYVATTRAKDEMHLWLHPSQKPESLSTVGDLIHLAL 871

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                  K          P + A+ +T    S      L     +  A R+        F 
Sbjct: 872  ASLDENKTESDMYCWGSPVISARQKTTDHPSSGLSFTLPKGSLSAVADRLAIRPEGSEFY 931

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF--EKENLPPHIDIIWRH 858
            +       G + H I+ +++  +      +I   +++ +        E +     +    
Sbjct: 932  RRHKPLYHGHVMHRILADIVLAK------DIEPALERYVSGGIVTRDEAIELADRLSVVT 985

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
               ++S  F            ++       + +           DRI L      DI DY
Sbjct: 986  SDSRLSRWF--------DGSGRVLNEQ--DILLPEGEQR---RPDRIILYDDHT-DIVDY 1031

Query: 919  KTGDN 923
            K G  
Sbjct: 1032 KFGAV 1036


>gi|152990203|ref|YP_001355925.1| hypothetical protein NIS_0454 [Nitratiruptor sp. SB155-2]
 gi|151422064|dbj|BAF69568.1| hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 265

 Score = 56.5 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 76/260 (29%), Gaps = 22/260 (8%)

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN---- 827
             S +    + PY      +L +    +F+     T RGT  H    E+ ++         
Sbjct: 7    PSSVHSFFDCPYRWAQIHLLGIRSFGNFQ-----TLRGTGVHAGAEEIWEESQKAGSKTF 61

Query: 828  -TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNI 885
                      + ++   E+E                       + ++I   ++  I V  
Sbjct: 62   SLSAAKDRAAETVEKRVEEEEFRFEDFETPEQAKDDAVKGVEVYAKEIVPKVDIPIQVEH 121

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
              +  ++   I + G  D I     G +   D KT     ++        QLS+     +
Sbjct: 122  YFEAELDD-DIKIGGTTDSI--NPDGKIR--DIKTS---TRKVQPSKYIEQLSIYKRLAE 173

Query: 946  AGSFSQIDCRKVANLFYIR--LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
                   D   + N+ +++  +        I  +  K   D++ ++  K   E       
Sbjct: 174  VNDIKTQDKAIIENVVFLKNNIGAHVMEVQIDVEGTKRKIDDIVKRI-KLWKEANDEFGK 232

Query: 1004 GEQPFISHLRLSEKSNIQSE 1023
             +  F  +      S     
Sbjct: 233  LDILFPPNPNSFMCSEKFCP 252


>gi|219668857|ref|YP_002459292.1| recombination helicase AddA [Desulfitobacterium hafniense DCB-2]
 gi|251764522|sp|B8FXD7|ADDA_DESHD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|219539117|gb|ACL20856.1| recombination helicase AddA [Desulfitobacterium hafniense DCB-2]
          Length = 1392

 Score = 56.5 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 18/160 (11%)

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHL-----MKQIIDSHFEKENLPPHI-DII 855
            +    +RGT  H  I  L          E+        +++ IDS   +E L       +
Sbjct: 1199 ELTPAERGTAVHAAIQHLPLALWRDTWEELAQEVRESMLQEHIDSLIRREILSAEQGGAV 1258

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI----GIHLTGFADRIDL-LKS 910
                   +  S      K     E++   +P  +++        + + G  D + L  + 
Sbjct: 1259 SVSQLKNLLDSTSG---KRLWEAEEVRREVPFTLSLRLRAQKEPVLVQGIIDAVLLSHQE 1315

Query: 911  GFVDITDYKTG---DNPKKETAQ-KLIDPQLSLEAAALKA 946
                + D+KT      P  E    +    QL L A A++ 
Sbjct: 1316 HEAQVMDFKTDNLAGVPDPELVLTQRYGLQLGLYALAVER 1355


>gi|257052991|ref|YP_003130824.1| hypothetical protein Huta_1922 [Halorhabdus utahensis DSM 12940]
 gi|256691754|gb|ACV12091.1| conserved hypothetical protein [Halorhabdus utahensis DSM 12940]
          Length = 861

 Score = 56.5 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 59/679 (8%), Positives = 153/679 (22%), Gaps = 73/679 (10%)

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
            P      + D  +        L   +      +  +    L    +  +     E +  
Sbjct: 1   MPVQRARSIDDLFEAVAGYDLVLTVDAPLSLALNRRLDHPRLGRFAATPQMLAADEFRPQ 60

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALI---------TADRNLARR 401
           + ++ F DV +       ++A  +   +    +E   + A++         T +      
Sbjct: 61  DQRQLFLDV-IESTALPWKQAAHLVELILGCWEETGDRQAILEFERYDTPKTREVLEVIA 119

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA--TLVKHPLAKFGF 459
                 R      I     ++    S       + +    D +          P      
Sbjct: 120 SVESAHRDLEEYRIDDDREVAVIGESQFSALDRSILPAEYDVIDPLTSEAFDLPAFHSFA 179

Query: 460 PEKYLSRAKNALELVALRGN-KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
               +  A           +     D       +++     ++            E  + 
Sbjct: 180 SRTAIVEAIVDNVTSDNADDVAIVMDRGGPFPALIESALEARDIPFHGGPGFADDEGLRT 239

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
              LL          +   +        +L + D  KL                 N+   
Sbjct: 240 FLELLRLAHADSRARVGDVRPIARGLGIDLPVDDEDKLLGELESAAAEPMQAFCANVPEW 299

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
             G+ +         + + ++       ++    +  +TV          +         
Sbjct: 300 TFGEAIREFEELSDRSLNVVR------DELDVLGLVDKTVTDGRLDDLEFYFSAFDVPID 353

Query: 639 LNFDTLILGGLNEGVWPKNTA-----KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
                ++L   N   +    A      +   +  +     + T  K          +   
Sbjct: 354 REDSGVLLADANTSTYVDRPAVFYLGLDADWTHQVIDRPWIDTERKDREHLRQFQLLLQN 413

Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
            R   Y         P     +          D  D+  +    +               
Sbjct: 414 GREQYYLVQETSAGEPVRPCLYF--------HDLLDDDIETFDDFETIPHTYRRGDGSTG 465

Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
           ++   P         T S S +   +N P   +  ++++     +F+       +G  +H
Sbjct: 466 FEH-DPVSAAPESIETISQSSLSTFVNCPRDYFFDQVVEQPDRDYFR-------KGNCYH 517

Query: 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISHSFLE-- 869
           +   E      +         +  +         + +   +      +   +   F++  
Sbjct: 518 D-FAEFYVNHPDVVADADRAELVDLFLDELRPFVDQVDRDVLETEFDVGLDLIERFIDEN 576

Query: 870 -------HEEKIQSSIEKIF-----------VNIPAK-MAIESIGIHLTGFADRIDLLKS 910
                   E ++      +                 +   +        G  D I    +
Sbjct: 577 PPVERDYSEYEVLPFGNLVANYFDHPIDSPITEQWFENPELGG-----RGKVDLI-HSPT 630

Query: 911 GFVDITDYKTGDNPKKETA 929
               + DYK+G        
Sbjct: 631 Q---LLDYKSGSAKSASQV 646


>gi|89894431|ref|YP_517918.1| hypothetical protein DSY1685 [Desulfitobacterium hafniense Y51]
 gi|122483028|sp|Q24WW8|ADDA_DESHY RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|89333879|dbj|BAE83474.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1392

 Score = 56.5 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 18/160 (11%)

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHL-----MKQIIDSHFEKENLPPHI-DII 855
            +    +RGT  H  I  L          E+        +++ IDS   +E L       +
Sbjct: 1199 ELTPAERGTAVHAAIQHLPLALWRDTWEELAQEVRESMLQEHIDSLIRREILSAEQGGAV 1258

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI----GIHLTGFADRIDL-LKS 910
                   +  S      K     E++   +P  +++        + + G  D + L  + 
Sbjct: 1259 SVSQLKNLLDSTSG---KRLWEAEEVRREVPFTLSLRLRAQKEPVLVQGIIDAVLLSHQE 1315

Query: 911  GFVDITDYKTG---DNPKKETAQ-KLIDPQLSLEAAALKA 946
                + D+KT      P  E    +    QL L A A++ 
Sbjct: 1316 HEAQVMDFKTDNLAGVPDPELVLTQRYGLQLGLYALAVER 1355


>gi|51245196|ref|YP_065080.1| exodeoxyribonuclease V, beta chain [Desulfotalea psychrophila LSv54]
 gi|50876233|emb|CAG36073.1| related to exodeoxyribonuclease V, beta chain [Desulfotalea
            psychrophila LSv54]
          Length = 1191

 Score = 56.5 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 91/829 (10%), Positives = 216/829 (26%), Gaps = 95/829 (11%)

Query: 150  KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
              +   ++ +   E    +L  LK + +  +      F     +    +L E  + S   
Sbjct: 306  DEIDPFLNSMGLPEMAATELLELKKQLFIGY---RIFFAGELERGVGRQLQEHGSISFDQ 362

Query: 210  YQIALM------RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                L           +  ++      +I     +      + S +        +    D
Sbjct: 363  LISRLAAGLCGEETHLQTALQARYDLALIDEFQDTDNEQWHIFSKLFASKK-HSLYLIGD 421

Query: 264  CHIPTAIWNTIT------EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV------K 311
                   +           ++      +   +      L + ++ L    +D        
Sbjct: 422  PKQAIYKFRGADIYSYFTARTKTDYFYSLDTNYRSHRDLVRGVNGLFAGSDDPFLFKEEG 481

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTS--DMRNTDILENKIPNIQKCFSDVAL---IEADN 366
             L         R + +  +   P      ++  +  ++K        +  A+   I A+ 
Sbjct: 482  LLYYPVKSGKSRDVYLVDAEKKPLVPFVYLQLEENDDDKKGKWSSALARTAIRGDIVAET 541

Query: 367  EREEAISIAIALRMSLDE--------NKKKSALITADRNLARRVKLELTRFGINIDISAG 418
                +IS   ++     +          +  A++    + A   +    + G+   I+  
Sbjct: 542  LHLLSISEPTSIHKLNRDGQSIYQPLRPQDIAVLVRSNSQAEAYQQAFLQVGVPAIIAGR 601

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
              +  T  S  L  LL AI   +D   + T +   L      +                 
Sbjct: 602  KTIFETDESHELLLLLQAIIDHDDLRLLKTAMTISLFACTGDDIMAIWQDEQAVAEWYNV 661

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                Y +   + ++                               +    +    LV + 
Sbjct: 662  FLQCYHLWSERGVLTML--------------------------YFLVDSKELFANLVQFS 695

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNV-CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
              +        + +  +   T                L  +++            E    
Sbjct: 696  QPERRIANFTHLFEVLQQAETAANLGPRQSLLWLRSALTGKQKNDAFELRLESDEEALQI 755

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +  ++ + +            +    K+    I       +++F +       E    + 
Sbjct: 756  VTMHSSKGLQYPVVFCPDLYGRSARIKNEKNVISCHDGGAVIDFGSEHFSERRERACREE 815

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSLRENNIPTIASR 714
             A++  L+ V  +   L++   +   +A         N     +       +        
Sbjct: 816  LAEDLRLAYVALTRAELRSYTYWADISARGAGVDASLNSALGHLLFAGDDIDYEEQQE-- 873

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
               RL VL             +     +   +   K     RP     L    +  S+S 
Sbjct: 874  ---RLKVLARESGALFQHVSAEPATCSSYGAERRVK-SLATRPHRPRLLATDWQMTSYSA 929

Query: 775  IKQL-INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI-- 831
            +  L  + P   + R  L       F + P     G   H+++ +     +  +  ++  
Sbjct: 930  LASLGDHAPVVQFDRDALADAPRIAFAELPKGARFGNAVHDLLEKCAFADLVLHADDLHV 989

Query: 832  ------------NHLMKQIIDSHFEKENLPP------HIDIIWRHLFHKISHSFLEHEEK 873
                          L +++    F +    P       +  + R    K    +L     
Sbjct: 990  QGMMEQKCEEYGLQLDQELFTQLFVQACSTPLFAGGFSLADLSRSRCLKEMEFYLRLAHI 1049

Query: 874  IQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYKT 920
              + I  I  + P   AI +  +   +TGF D +   + G   + DYK+
Sbjct: 1050 NLAEINTILADEPTVQAISAKKMRGYMTGFIDLVCQHE-GKYYVVDYKS 1097


>gi|167753572|ref|ZP_02425699.1| hypothetical protein ALIPUT_01849 [Alistipes putredinis DSM 17216]
 gi|167658197|gb|EDS02327.1| hypothetical protein ALIPUT_01849 [Alistipes putredinis DSM 17216]
          Length = 1053

 Score = 56.5 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 89/872 (10%), Positives = 214/872 (24%), Gaps = 147/872 (16%)

Query: 145  AIWLAKNLADIIDII-ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
            A+ L   L  ++  +    ++    +              +   L+       +   + N
Sbjct: 285  ALPLVAELQPLLAELCARYDRS---IRFWNTTDLLRENYRSFALLQDLYGKVRQMCSDEN 341

Query: 204  ASSPVGYQIALMRAEAEHLMK-------GTKGPIIIAGSTGSIPATA----RLMSTVANH 252
                   +  L      +                +I     +          L+      
Sbjct: 342  VMMLSETKNILSEFIRHNDAPFIYEKVGNRYDRFMIDEFQDTSTREWENFLPLLGNAMAQ 401

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                 VL   D       W     +  +                 +    L     +   
Sbjct: 402  SEQTSVLIVGDIKQSIYRWRGGDWEILH----------------RRAARELGEASTETIH 445

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
            L      +       ++       SD    + L  + P                 REE  
Sbjct: 446  LKENFRSLPLVVEFNNRMIGKVVESDNTALNQLLAQAPPHALGGK---------AREE-- 494

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                 LR +L E  ++ A     + L           G                  ++  
Sbjct: 495  -----LRDTLQEAYREHAQSARKKGLHPGYVNITHYAGEPP---------------LIER 534

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            +   + K      +  LV+         +     +            +  +D+M  ++L+
Sbjct: 535  IKALVNKGFRPKDMMILVRSG------TDGTKVASALLDFKRRNTDPRYRFDVMTQEALI 588

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            +                   ++                   L   +     +       +
Sbjct: 589  VGTAPISSFVIACLKLAMNPADSLSRAIYNHFSAKPSFDAELTEEEVVFLKSLRLFPPEE 648

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              +  V            +       EE   L ++  +II   +   A+   ++      
Sbjct: 649  AFERIVM-----------RYDLQERREEIAYLQAVHEQIINFCAGRVADIPLFLKWWDEQ 697

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
              G ++  +  ++ T+ I    +++ L    +++   N  + PK++  +  +     +D 
Sbjct: 698  GSGRSLSVEQGET-TIEITTIHKAKGLEKKVVLIPYCNWTLNPKSSGLSANIVWAEGTDG 756

Query: 673  NLKTAEKY-------------------IGQAAH------DFEMANGTRH-LIYTRSLREN 706
             L+   ++                       AH       +         L      +  
Sbjct: 757  ELEEIGRFPVRYKTSMGESLFSADYYREMIYAHVDNINLLYVALTRAVESLHIFIPQKGA 816

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKR--GQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
              P +    LQ +    GT   D L+         +     ++   +P   R      + 
Sbjct: 817  KGPNVGQLILQNIAPEDGTVRLDGLEGSCSRDEAAETYEFGEFAGPEPDTHRKAKAAHVL 876

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
                  S  +++  +  P   Y             + +    D G L H +         
Sbjct: 877  LGDYPTSEPQLQ--LRLPTERYYE--------EEGRAELTPRDFGILMHRVFE------N 920

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK--ISHSFLEHEEKIQSSIEKIF 882
               T EI   ++ +       E   P +  +          +  F           + + 
Sbjct: 921  AATTDEIYMAIEAMTQDGVLDEKEAPRLRELVEKALADPVTAEWF-------GGRWQVVR 973

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
                 ++ +   G       DR+ +       + DYK GD       +++ +        
Sbjct: 974  NEN--EIILPGSGTTR--RPDRV-MTDGERAVVVDYKFGDRETARHRKQIRE-----YLR 1023

Query: 943  ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
             L+   +++ +      L+Y+RL +  +++  
Sbjct: 1024 LLRQMGYTRTE----GYLWYVRLGRTERVEEK 1051


>gi|315604925|ref|ZP_07879982.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313361|gb|EFU61421.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 488

 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/363 (9%), Positives = 82/363 (22%), Gaps = 42/363 (11%)

Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
             L  +++ +    P  +             L +++            L           
Sbjct: 151 QMLAQLLETVDAPWPSEIGPQMRAMPAFRAELRNLVARAGEAGMNAASLVEAGGRFCRPE 210

Query: 181 WLLAADFLKIASKYWTERLVELN--ASSPVGYQIALMRAEAEHLMKGT----------KG 228
           W  A   +    +                   Q            +              
Sbjct: 211 WEAAGAIVAALEEGPQRSPEYSGTLRVDLSRIQSLAADLIRSWQSEAPTRGVQAPCPVPD 270

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            +++       P+T  L++       GA ++   D  +  A +                 
Sbjct: 271 LVVVDDLQDCTPSTLTLLAACRE--KGARIVAFSDSDVAVAGYRGGEPHLD--------- 319

Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                    +L   L +   ++ ++  +S  +   +           +   RN  + ++ 
Sbjct: 320 --------RRLASLLRVDIRELGQVYAMSAPVRELARQACSRITQSGSPARRNARVGDDA 371

Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLE 405
                     +         +    IA ALR     +       A+I    ++    +  
Sbjct: 372 PR------GGLVTHLGATPSQMGALIARALRSHHLHDGIDFADQAVIVRSASMVAETRRY 425

Query: 406 LTRFGINIDISAG-IPLSTTLHSSILTSLLNAIF-KLNDFMAIATLVKHPLAKFGFPEKY 463
           L R G+ +         ++   + +L  L+           A    +   L         
Sbjct: 426 LARGGVPLVGGGRAFDFASQPTTRLLLDLITVPTGSTGTDEAARRELAERLLPSPLVRAD 485

Query: 464 LSR 466
              
Sbjct: 486 PLA 488


>gi|307328519|ref|ZP_07607693.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
 gi|306885787|gb|EFN16799.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
          Length = 764

 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 57/663 (8%), Positives = 146/663 (22%), Gaps = 73/663 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           ASV     T RA  E+R    ++           ++       +              V 
Sbjct: 78  ASVLAVTFTNRAAGEMRGRLRQLGAGGV----QARTFHSAALRQLQYFW------PKAVG 127

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                 E+ RL+      + +           +        I  +K    +         
Sbjct: 128 G-----EVPRLVERKVQLVAEAATRCRVRLDRNELRDVTGEIEWSKVTQTV--------- 173

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH--- 221
             ED  A+  +        AA+ +      + +   +          +  +    E    
Sbjct: 174 -PEDYPAVAAKSGREAPRDAAE-IGRIYATYEQLKRDRGVIDFEDVLLLTVGVLQERHDI 231

Query: 222 --LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
              ++      ++       P   RL+       +   V+   D       +   T    
Sbjct: 232 ADQVRRQYQHFVVDEYQDVSPLQQRLLELWLGDRDSLCVV--GDASQTIYSFTGATPDHL 289

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
               +      HP  ++ KL+       + V     + ++  GR+               
Sbjct: 290 LDFRTR-----HPGATVVKLIRDYRSTPQVVHLANGLLSQARGRAA-------------- 330

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--------KSAL 391
                   ++ + ++   D       +E  EA   A  +R  +   ++        + A+
Sbjct: 331 ----EHRLELVSQREAGPDPVYAAYADEPAEAEGTARRIRELITPVEQGGGGVPASQIAV 386

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +      +   +  L    +   +                 LL    +            
Sbjct: 387 LYRVNAQSELYEQALADAQVPYQLRGAERFFERPEVREAGLLLRGAARGRSTDPALADAD 446

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            P        + +   +                   L +LV        +          
Sbjct: 447 IP-----SQVRAVLGTRGWTPEPPAGSGAVRDRWESLAALVRLAEDFAGSRPGATLSDLV 501

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
              +++  A          +  L   K  +      + +++          +  ++E R+
Sbjct: 502 AELDERAAAQHAPTVEGVTLASLHAAKGLEWDAVFLVGLTEGMVPITYAKTDQQIEEERR 561

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
           L  +        L+  ++     G         +++ +         +           +
Sbjct: 562 LLYVGVTRARHHLTLSWALSRAPGGRASRRPTRFLNGLRPGSQAVGARTLGGAGG----I 617

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
               +       +              A        +       +              A
Sbjct: 618 ERGAAAPGGGGGVRRRRGPVHCRVCGRALTDAGEMKLMRCEGCPSELDEALYERLRDWRA 677

Query: 692 NGT 694
              
Sbjct: 678 EQA 680


>gi|291456201|ref|ZP_06595591.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213]
 gi|291381478|gb|EFE88996.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213]
          Length = 1365

 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 892  ESIGIHLTGFADRID--LLKSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
              + + L+G  DR++  +L  G   + + DYKTG  P  +      D QL     
Sbjct: 1154 NDLTVRLSGRIDRMETRILADGSENIRLIDYKTGAAPTVKQIFN--DLQLVCYQL 1206



 Score = 41.8 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 57/586 (9%), Positives = 152/586 (25%), Gaps = 27/586 (4%)

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL-LDFLDIKREDVKRLGNVSNEMYG 322
                  +         +  +      +  Q   A + L  L  +      +       Y 
Sbjct: 442  RTYGERLRRDGVPVRYSSVTRPLNSESFVQGLFALIELARLRAEGVASCTMSLAETASYV 501

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE--ADNEREEAISIAIA--L 378
            R+ V +    P  T+  +       ++  I+   + +  +   A ++      I+    L
Sbjct: 502  RTRVSTVMNGPLVTAGAKPGQGRPARLAPIESAMAALESLAPIAGDKASLHGLISSWETL 561

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
            R S  +  ++  ++  D  +      +L      + +      +     ++L ++   + 
Sbjct: 562  RESSVDGHER--VVVDDSIIGFSADADLAFGADALYVMLAFDDAQAPAENVLDAITAVLG 619

Query: 439  KLNDFMAIATL--VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                  A   L  +   +++         R++ +  L           +    +L     
Sbjct: 620  ADPQARAFMNLWTLVGKISRGLSNLPPEQRSRPSYALAVAWNAAAITPVWQKLALANTPD 679

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                N+      +     ED   +  ++  I Q     V   +  +      +++  T  
Sbjct: 680  GRAANDRLDVAMRLFQFAEDSTASRDIMGFIAQVRAMQVQADSLAHIGPVENAVTLTTPA 739

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                             ++W    G+        + E       N  +         D +
Sbjct: 740  GTAGRHWQYAWLPSLQQDVWPNLAGRNTMFGGEDLAELVLRGTLNTADA-----AGHDPQ 794

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---N 673
             +     +  +  +  T   R +    +    L+   +        +     ++      
Sbjct: 795  FIAVLSSEKKSFLVALTRACRSVTVSAVWNDDLSPSDFLFGYMPEYYPRDKQRARFTDVG 854

Query: 674  LKTAEKYIGQAAHDF--EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
             +T+E  +  +  D           +I   S  +++    A+  L  L   G      + 
Sbjct: 855  EQTSESGLDLSGLDGDPRGLVTAARVIVATSEPDSSEARDAAETLAVLAENGIAAANPDN 914

Query: 732  KKRGQCYLDW---TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                         +     +  +      +      A   T S S +  L   P      
Sbjct: 915  WAFASALSRRGTSSAVSPASGSKQTEDDERTSGDDHAPLVTLSPSAVDGLWACPVCWLLE 974

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
                                GTL H +  +  ++ +++   + +  
Sbjct: 975  HQFAGPQPGSVNAG-----FGTLIHAVAQQGSEEGLDRLDSDESAR 1015


>gi|329924069|ref|ZP_08279332.1| ATP-dependent nuclease subunit A [Paenibacillus sp. HGF5]
 gi|328940908|gb|EGG37216.1| ATP-dependent nuclease subunit A [Paenibacillus sp. HGF5]
          Length = 1376

 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 64/647 (9%), Positives = 161/647 (24%), Gaps = 92/647 (14%)

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
            +A    +     +++     +      ++  ++    G   +   D       +      
Sbjct: 401  DAAMEYREQFDEVLLDEYQDTNSVQEDIVRLISREMPGNRFM-VGDVKQSIYRFRLAEPG 459

Query: 278  STNITSSNTTYSTHPQYSLAKL------------LDFLDIKREDVKRLGNVSNEMYGRSM 325
                     +  T    +  ++            +D +++    +            R+ 
Sbjct: 460  LFLDKYKTFSSGTGTSQTGIRIDLARNFRSRMEVVDAVNLLFRQIMNESVAEIAYDERAE 519

Query: 326  VISKSFLPPDTSDMRNTD-------------ILENKIPNIQKCFSDVAL----IEADNER 368
            ++  +  P   ++                    E +          V L    +E +  +
Sbjct: 520  LVCGASFPERETNGGANPYMPEMLLIDRAGKGPEEQSDESASEEDGVQLEAEALEMETAQ 579

Query: 369  EEAISIAIALRMSLDE-------------------NKKKSALITADRNLARRVKLELTRF 409
             EA +IA  +R    E                         L+ +    A  +  EL + 
Sbjct: 580  LEARAIARKIREMTGESGKPLMVYDKGLKTMRPAGYGDMVILLRSAMVWATLIIEELRQE 639

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            GI                 I+ SLL  I      + +A++++ P+      E    R   
Sbjct: 640  GIPAFGEQNKGYFQATEVEIILSLLQVIDNPRQDIPLASVLRSPILGLSEEEMAQVRLCA 699

Query: 470  ----------------ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                            A  ++     ++  D        L+ +A       +        
Sbjct: 700  KGTYYDALKAAVSLSVAPPVMDSARPRDFVDGKWTPGAGLEGLAEAAAGHELVAGSHLSD 759

Query: 514  EEDKEL--AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                    A+ +   +   +   +             S+SD      +    +       
Sbjct: 760  APLTAEGHAIEISAELGAKLGLFMDRLQRWRQEARQGSLSDLIWGIYSETGYLDWVGGLP 819

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG-ETVKPKIEKSSTLFI 630
                                 +T S      + +I  +        T      + + + +
Sbjct: 820  GGKQRQGNLTALYDRAVQYEQDTASRGLFRFLTFISRLRERGGDLGTAGGTESQGNAVRL 879

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPK-----------------NTAKNPFLSRVMQSDLN 673
            +   +S+ L F  + + GL++    +                    +   +S     +L 
Sbjct: 880  MTIHKSKGLEFPVVFVAGLSKNFNQQDLNAPFLMHKELGFGPKFVDEGMRVSYPTLPNLA 939

Query: 674  LKTAEKYIGQA---AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
            ++   +    A      +      +  +        ++P   S W  +          D 
Sbjct: 940  IRRRSQLELLAEEMRVLYVALTRPKEKMIL-VGTVKDLPKKVSAW-AQADFNPELLLPDY 997

Query: 731  LKKRGQCYLDW--TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            +  RG+ YLDW     + + +  P   +        ++      S+ 
Sbjct: 998  VLARGRSYLDWIGPAVIRHPSAGPLRGQAGLPEETSSRALAADRSQW 1044



 Score = 44.9 bits (104), Expect = 0.075,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 55/187 (29%), Gaps = 39/187 (20%)

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHI 852
                         +RGT++H I+  L  +R+  +  E    +++ I    EKE +     
Sbjct: 1173 RPKFMESTKLTPAERGTVYHTIMQHLPLQRLE-DAAEPTAEIEETIRYLVEKEIITGEQA 1231

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-------------------- 892
              +       +   F     K   S E ++  +P   A+                     
Sbjct: 1232 SAVEAAEISSL---FDCDLGKRVLSAEDVWREMPFSYALPAAEAYQGLAFLDPISEHSAQ 1288

Query: 893  ---------SIGIHLTGFADRIDLLKSGFVDITDYKTGDN----PKKETAQKLIDPQLSL 939
                        + + G  D +    +G + + DYKT                   QL L
Sbjct: 1289 GLPEMELLRDETVLIQGVVDCMFRH-NGRLVLLDYKTDRVLEHRGGLTALADQYRFQLDL 1347

Query: 940  EAAALKA 946
             A AL+ 
Sbjct: 1348 YAKALED 1354


>gi|281355725|ref|ZP_06242219.1| Exodeoxyribonuclease V [Victivallis vadensis ATCC BAA-548]
 gi|281318605|gb|EFB02625.1| Exodeoxyribonuclease V [Victivallis vadensis ATCC BAA-548]
          Length = 1235

 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 86/894 (9%), Positives = 201/894 (22%), Gaps = 116/894 (12%)

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN-LADIIDIIETEEKKWEDLHAL 172
              + +     P+ + +       S   S   A+   +  LA I++  E +      L  L
Sbjct: 276  EFLQLLAAFTPEALTEALCARKKSGAPSQFAALEQRQEALAGILEQSELQRIF--QLAEL 333

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-- 230
                     L A + L  A     ++         +      +      L +  +     
Sbjct: 334  APRFGDTVLLAAVEELLAAYDRAKQQANLQTFDDMIRDVHRALMEPESRLQRSLQQQYPL 393

Query: 231  -IIAGSTGSIPATARLMSTV-------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             I+     + P    +   +             A +    D       +      + N  
Sbjct: 394  GIVDEFQDTDPIQYAIFKKIFIDPAEPGGAVPAATLFLVGDPRQAIYGFRGGDIDTYNRA 453

Query: 283  SSNTTYSTHPQYSLAK-LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            + +       +Y+L +       +           ++      + + +   P        
Sbjct: 454  ADDVFRYGGAKYTLTRNFRSAAGMIEAVNLLFSRHASPFASERITLPEISAPAKPELGNR 513

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-----------------DE 384
             +          +    +  +  D++ +  ++ A+ +  +L                   
Sbjct: 514  PESALLVAGREDRRPLRITDLP-DSDGDACLAAAVEIANALLCDDTLHIPPRSDTPERRL 572

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                 A++    + A  +K  L    I    S    +  +  +  L ++L AI       
Sbjct: 573  RPGDIAILVKKWSEAYALKPLLAARMIPSVFSNSESVYRSDEARELLTVLAAIAAPERSG 632

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
             +   +   L   G  E             +  G+    +     + +      +     
Sbjct: 633  EVLAALATGLGGCGLAELLRL--------GSEEGSNELAEHQTAFARLRREWRPETFIVM 684

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                        +       +  L  +  L      ++S       +    L+      +
Sbjct: 685  FSGLLKYFDIPARFARQEGGERKLANLHQLGDLLQQESSRRKLSINALLNFLSDAVEGRI 744

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                      L  + +   ++      + +   ++   +    +                
Sbjct: 745  DDSSDEVKQILESDRDSVKIT-----TVHSSKGLEYPVVILPSLFR------FATGSRSP 793

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
                   G L   L    ++     +E            L+R       L   +      
Sbjct: 794  GGNFHEDGHLVYELHAAGSMNEREHDEATMENLRLAYVALTRAKYRCHVLWGKDGASSYC 853

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWL----QRLLVLGGTDFFDNLKKRGQCYLD 740
                +     R                 +R+L        +L        L    Q Y  
Sbjct: 854  NSPLDWLVKFREAT-------PEEAAHPTRFLKMRKDAPRLLPVELEEKTLPVSTQVYRP 906

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK-------- 792
               +           R        A   + S +   +L  DP    A             
Sbjct: 907  ELDRSRQLAPWEWNHRVLRDHYRIASFSSLSPAASGRL--DPADDGADHDDSQPEEQLPA 964

Query: 793  ----LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL------MKQIIDSH 842
                          P     G   H I+ EL          E+         +     S 
Sbjct: 965  LSETAPEKNPALALPGGKAFGNAVHEILEELDFTAPFDTLRELAARKLRFYGLLAGDGSG 1024

Query: 843  FEKENLPPHIDIIWRHLFHKISHS----FLEHEEKIQSSIEKI----------------- 881
             ++E L     ++ R     +  +    F   +      + ++                 
Sbjct: 1025 ADRERLDAVAAMVERTRRAPLHDAQGDGFTLSQIGRADRLSELRFLFGFGRKFRTGEIAE 1084

Query: 882  ----FVNIPA------KMAIESIGIHLTGFADRIDLLKS---GFVDITDYKTGD 922
                +           +      G  L GF D +   ++       + D+KT  
Sbjct: 1085 LLGDYAEREFRFTDWPEWNTPVDGGFLNGFIDLVFRRRTASGDRYSLVDWKTNR 1138


>gi|218458472|ref|ZP_03498563.1| probable ATP-dependent exonuclease V protein, nuclease and helicase
           domains [Rhizobium etli Kim 5]
          Length = 160

 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSL 939
            V+I   + ++     ++G  DR+ +L    V I DYKT   P             QL++
Sbjct: 58  EVSIMGTLTLDGRRYAVSGRIDRLAVLTD-RVVILDYKTNRVPPASEDAIPFAHRAQLAI 116

Query: 940 EAAALK 945
               L 
Sbjct: 117 YREILA 122


>gi|313117254|ref|YP_004044237.1| hypothetical protein Hbor_30390 [Halogeometricum borinquense DSM
           11551]
 gi|312294145|gb|ADQ68576.1| hypothetical protein Hbor_30390 [Halogeometricum borinquense DSM
           11551]
          Length = 862

 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 59/480 (12%), Positives = 113/480 (23%), Gaps = 78/480 (16%)

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS-----ISDWTKLTVTCLQNVCLDEH 569
           E    A  +  H       L  ++T         +     ISD   L     +++ ++  
Sbjct: 215 ESAFEAAGIPYHGGPGFDDLPHHRTFLQLLRSAHAGRETRISDVRPLLTRFGKSIDIEHD 274

Query: 570 RKLPNLWFEEEGKTLSSLFSKII-----ETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
            K      ++    L  L  ++            ++ A   +D     +    +      
Sbjct: 275 EKRLYDSDQQAANWLLELHDEVRTGTFSAALDAYESAADTVLDAFRDELSTLGLLTDPVT 334

Query: 625 SSTLFIL-----------GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
              +  L                 +L  D      ++  V         +     +    
Sbjct: 335 EEAVDRLEFYVQTYDIPVDHGNEGVLLADAKSAAHVDRPVVFYLGLDEGWTHSPPRRPWV 394

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
            +  E           + NG               P     + + L       F D    
Sbjct: 395 DRDREFERNIQQFQLLLQNGIDQYYLV-QDTAGGTPVTPCLYFEELFDETFERFSD---- 449

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                LD                 +P     A+  T S S +   +N P   +  R+L  
Sbjct: 450 -----LDSVPHSRAFRTTADGFAKEPLDIAAAEVTTISQSSLNTYVNSPRDYFFSRLLDT 504

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH--FEKENLPPH 851
               +F++       G L H+     +    +     +  + + I+D    F +      
Sbjct: 505 PDKDYFRE-------GNLLHDFAEYYVAHPESVTDETLAEVAEIILDEVDPFLRGVDREV 557

Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSI-----------------EKI---FVNIPAKMAI 891
               +R     I   FL+                            I         +   
Sbjct: 558 RHTKYRLGLQTIVE-FLDTNPPHGDEFVAGNDGWGRNFFAEYYDRPIDTPHTERWFE--- 613

Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP---------QLSLEAA 942
            +  + L G  D +         + DYK+G      +  K             Q  L  A
Sbjct: 614 -NSDLGLKGKIDLV----HDSTHLLDYKSGSKKSAHSIVKHSALDPPSDKPNFQALLYLA 668


>gi|170719947|ref|YP_001747635.1| exodeoxyribonuclease V subunit beta [Pseudomonas putida W619]
 gi|169757950|gb|ACA71266.1| exodeoxyribonuclease V, beta subunit [Pseudomonas putida W619]
          Length = 1223

 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 109/1017 (10%), Positives = 243/1017 (23%), Gaps = 138/1017 (13%)

Query: 67   ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
              G    +LP I+ L   +  +       +           +L +L    + W  +L  I
Sbjct: 187  HWGSPDALLPRIRPLFGRLRAQQDEQEPQALIDAALQQRADQLYQLKAPWVQWAEQLQQI 246

Query: 127  IKDLYPESPLSLPISPANAI-WLAKNLADI----------------------IDIIETEE 163
             +D             A         L                         +       
Sbjct: 247  CRDAVAAKLADGRKLQARFFEPWFDKLRAWAADEQTVELDLGTGFTRLTPAGMAEAWKAG 306

Query: 164  KKWE--------DLHALKNEKYGMWWLLAADFLKIASKYW---TERLVELNASSPVGYQI 212
            +  +        DL             L        S  +     R  E+     +    
Sbjct: 307  EPPDHPALHAMQDLPQQLQALASPDARLLEHAAAWVSARFEVEKRRRAEMGFDDMLLRLQ 366

Query: 213  ALMRAEA----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCH 265
              + +EA      L++      +I     + P    +   +           +    D  
Sbjct: 367  HALASEAGERLAGLIREQFPVALIDEFQDTDPVQYGIFERIYRISENREETGLFMIGDPK 426

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                 +      +       T    H   +  +  + +      V       ++  G  +
Sbjct: 427  QAIYAFRGADIYTYLSARRATAGRLHSLDTNYRSSEAMVAAVNQVFLQAEARDQGRGAFL 486

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFS--------DVALIEADNEREEAISIAIA 377
                   P    ++R     E  + + Q   +        D  +      ++ A S A  
Sbjct: 487  FRENDDNPLPFIEVRAKGRSERLLIDGQAIAALQCWQLESDEPVSSTLYRQQLAASCASH 546

Query: 378  LRMSLDENKK------------------KSALITADRNLARRVKLELT-RFGINIDISAG 418
            +   L+  ++                    A++  D + A+ V+ EL  R   ++ +S  
Sbjct: 547  IVALLNSAQRGLSGFSKADGELRPCLPSDIAILVRDGHEAQLVRSELASRDVRSVYLSDK 606

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFM---AIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
              +     +  L + L A  + +      A    +   L+     +           ++ 
Sbjct: 607  DSVFAAQEALDLLAWLKACAEPDSERLLKAALASLTLELSLAELDQLNQDERVWEDWVMR 666

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
             R  ++++    +  ++   +   +    +             +A    + +L  +  L 
Sbjct: 667  FRRYRDTWQRQGVLPMLRHLLHDFQLPRRL-------------IARSDGERVLTNLLHLA 713

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                               +     L N       ++  L  +E+   + ++        
Sbjct: 714  ELLQQAAGELDGEQ--ALIRHLAEHLANAGQAGEDQILRLESDEQLVKVVTIHKSKGLEY 771

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              +    I     +               +         +  L + + L        V  
Sbjct: 772  PLVYLPFICTSKPVDGSRLPLAWHDSQGNAQLTLTPDPAQITLADDERLAEDLRLLYVAL 831

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSLRENNIPTIA 712
                   +L        N K+++ +     +         G+  L           P IA
Sbjct: 832  TRAQHACWLGVADLKRGNQKSSQLHRSALGYLLGGGVQLQGSAQLTDWLQNLLAGCPHIA 891

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
               L         D         +  L   RK   T  +  +        +  Q      
Sbjct: 892  CPGLPE------ADEERYRSPHAERELLPARKPRRTAAEHWWIASYSALRVGEQTLGADS 945

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            S+ +QL++D                   + P   + GT  H ++    ++   +      
Sbjct: 946  SQAQQLLDDEGGDAQLPREVPADSGDIHRFPRGPNPGTFLHGLLEWAGREGFAEVAANPK 1005

Query: 833  HLMKQIIDS------------------HFEKENLPPHIDIIWRHLFHKI---SHSFLEHE 871
             + + +                         E LP     +              +    
Sbjct: 1006 LIERTVGQRCNRRDWTGWIPTLSQWLQQLLNEPLPARDMSLTLAQLQHYQIEMEFWFASH 1065

Query: 872  EKIQSSIEKIFVN--IPAKMAIESIGIHL----TGFADRIDLLKSGFVDITDYKTG---- 921
            +     ++++      P      +    L     GF D    L  G   + DYK+     
Sbjct: 1066 QVDAEQLDRLVARHTHPGAARPAAQPTLLNGMFKGFIDLAFEL-DGRYFVADYKSNWLGP 1124

Query: 922  -------DNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                      +K   +   D Q  L   AL     +++      R V    +I L+ 
Sbjct: 1125 DIQAYDTLAMEKAILEHRYDLQYVLYLLALHRQLRARLPEYDYDRHVGGALFIFLRA 1181


>gi|222476100|ref|YP_002564621.1| hypothetical protein Hlac_3201 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222454471|gb|ACM58735.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 862

 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 73/716 (10%), Positives = 176/716 (24%), Gaps = 98/716 (13%)

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           + ++        ++   D  + +A+   + +      +            LA        
Sbjct: 9   IDSLYEECKDFDLVLVPDAPMASALNRRLDQPHFGPFAITP-------RRLAARRREQAE 61

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
            R     L   ++  +       ++                       + F+  A   A 
Sbjct: 62  DRLAFLELIQTADLNW------KEASHAVGNILQCWEYQGTANAVLDYEQFATTATHTAV 115

Query: 366 NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT- 424
           +   E  + +  L     +     A++            EL R  +  D     P +   
Sbjct: 116 DCIGEMDTTSKRLTEYTIDADTSVAVVGFK------QLTELERSILPSDYETVDPFTEES 169

Query: 425 ---LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL-ELVALRGNK 480
                  IL S    +       A+   V    A         +   ++L E      + 
Sbjct: 170 FNYPPFRILDSPAAIV------DAVLHTVTPENANDVAVVLDAASQYSSLIESALEAADI 223

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
             Y           R               R +   ++  V  V  +L  +  +V  + +
Sbjct: 224 PYYGGPGFTDNSSHRA---------FLQLLRHAHAGRDTRVGDVRPLLVQLGLVVDIEHD 274

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
           +             +  +    ++         + +    G +L +   ++   G     
Sbjct: 275 EKRLRDLDVPE--IEWLLEFSADIEAHTLASALDKFETVTGSSLDAFREELERLGIQDDI 332

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
              + +D +   +    V P   ++  + +     +  +    +   GL+E     +  +
Sbjct: 333 VTEQAVDRLEFYLQSYEV-PIDRENDGVLLADAKSAAYVGRPVVFYLGLDEDWTHSSPRR 391

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
                            E+ I Q     +         Y         P     + + + 
Sbjct: 392 PWVDRDQE--------YERNIRQFQLLLQNGV---DQYYLVQDTAGGTPVTPCLYFEEI- 439

Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
                   D   +R                       +       +   +S S +   +N
Sbjct: 440 -------LDEEFERFSDLDSIQHS-RAARTTHDGFGKESIDVAAEKVTAFSQSSLNTYVN 491

Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
            P   +  R+L+     +F++       G LFH+     +       + +++ + + I+D
Sbjct: 492 SPRDYFFSRLLETPDKDYFRE-------GNLFHDFAEFYVTHPDVIRSDDLDEIAEVILD 544

Query: 841 SH--FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI----------------- 881
               F +          +R     +      +     S +                    
Sbjct: 545 DVDPFLRGVDREVRLTKYRIGLQTVVEFLDANPPADGSFLTPASGWGTNFFAEYYDRPVD 604

Query: 882 --FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935
                   +    +  + L G  D +     G   + DYK+G      +  K    
Sbjct: 605 APHTERWFE----NTDLGLKGKVDLVY----GPTHLLDYKSGTKKSATSIVKHSAL 652


>gi|326384946|ref|ZP_08206620.1| exodeoxyribonuclease V [Gordonia neofelifaecis NRRL B-59395]
 gi|326196336|gb|EGD53536.1| exodeoxyribonuclease V [Gordonia neofelifaecis NRRL B-59395]
          Length = 1123

 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 90/1026 (8%), Positives = 216/1026 (21%), Gaps = 135/1026 (13%)

Query: 18   FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
              E + AL +         D +  L  A V   V   R  + L     +     +  +  
Sbjct: 73   LTECVSALADPEAARTSDDDLVAFLADADVAEVV---RRREYLTDALSDFD---AATMAT 126

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELAR-LILIWRNKLPDIIKDLYPESPL 136
              +  + +                  +  + + E+AR   L   +  PD          +
Sbjct: 127  THTFCNRMLAVLGFLGGRQQQFPILENVDEMVAEIARDAYLSRFSGDPDNAPSYAEVEQI 186

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI-----A 191
            ++      A  LA          E E     D+     E+      +     +I      
Sbjct: 187  AVAAVRDPAAVLAP-------DREDERTDESDIRVWMAEQARKHTAMRKRLARIRTYDDL 239

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +   E + + +       +           ++     ++I     + P    ++     
Sbjct: 240  QQALYEIVTDPDIGDEACRR-----------IREQFSAVLIDEFQDTDPQQWEIVKRC-- 286

Query: 252  HPNGAIVLPGLDCHIPTAIWNTIT----------EKSTNITSSNTTYSTHPQYSLAKLLD 301
                  ++   D       +                     + N          LA + +
Sbjct: 287  FHGHLPLILVGDPKQSIYAFRGAEVLSYLNAVEAAGEQRRLTVNWRSDAAVVDGLAAIFE 346

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
               +    +      +     R        +         T   +   P + +  S V  
Sbjct: 347  GSTLGHRQIAYQPVQARRAGSRVHGAPAVRIRGFMRGDFTTFTQDGTAPLVAEVRSRVTE 406

Query: 362  IEADNEREEA--ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
              AD+                +        A++         ++  L   GI   +++G 
Sbjct: 407  DVADDLARLLNSDVTIDDGGRTRPVRPGDVAVLLRANRTIAPLQQALGDRGIASVVTSGT 466

Query: 420  PLSTTLHSSILTSLLNA-------------IFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
             +  T  +     +L+A              F     ++  TL +      G     L+ 
Sbjct: 467  SIFATPAARYWWYVLSAIDTPSRQPRVRLAAFTPIIGLSATTLERQGDTGVGTLSGQLAE 526

Query: 467  AKNALELVALRG-NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                             +        +L     ++  T V       + +  + +  +  
Sbjct: 527  LGRVFVDGGFAAMAARLFGQFGTAERLLGMDGGERLLTDVLQISELCNRQASDTSAGIAS 586

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
             +      +               +   T+       +        +  + F  +G +  
Sbjct: 587  LVDWLGGQIDDGAQWGQQRDATRRLDRDTEAVQIMTVHASKGLEFPIVYVPFGWDGASHP 646

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
            +  + +         +              +           L +L    +R  +   L 
Sbjct: 647  NPATFLFHEDDRRHLDVGG--KQARGYARRDRQSRIEGAGEDLRLLYVAATRARSQVVLW 704

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLN---------LKTAEKYIGQAAHDFEMANGTRH 696
                                    +  +         +          A    +A  +  
Sbjct: 705  WAPSTTTARGALHRLLFTAEDRRIAARSGEISPIPETVPIPPIDSDCVAILRGVAAASPS 764

Query: 697  LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
            ++   + R   +            +L    F   + ++ +                    
Sbjct: 765  VVVEPAARTGRVEWRPPAPSATSPILDVARFGRRIDQQWRRTSYSAIVAAAHAAVHAETP 824

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
            P                  +       A  A               P     GTL H ++
Sbjct: 825  PAAATVQAGSEPEDVHRPDEPDDAGLAAPGAASAEMTGPPSLMNGLPFGAAFGTLVHEVL 884

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
              +     +++   +    +       +          I   +  +     L        
Sbjct: 885  EHVDTSSADRDEHVLAMCRQGAAARAVD----------IDVDVLARALVGVLTTPLGFGD 934

Query: 877  SI----EKIFVNIPAKMAIESIGIH----------------------------------- 897
                   +    +  ++ + + G                                     
Sbjct: 935  LWSVQPSRRLAELDFELPLSAEGGGFGLGAVGDLLARHLPADDPLVAYSDSVRTVSSETF 994

Query: 898  ---LTGFADRIDLLKSGFVDITDYKTGD--------------NPKKETAQKLIDPQLSLE 940
               LTG  D +         + DYKT                +   E        Q  L 
Sbjct: 995  SGYLTGSIDSVLRTDDDRFVVVDYKTNRLRAGDLSVEDFDRESMAAEMMSAHYPLQALLY 1054

Query: 941  AAALKA 946
            + AL  
Sbjct: 1055 SVALHR 1060


>gi|313902120|ref|ZP_07835531.1| recombination helicase AddA [Thermaerobacter subterraneus DSM 13965]
 gi|313467638|gb|EFR63141.1| recombination helicase AddA [Thermaerobacter subterraneus DSM 13965]
          Length = 1488

 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 61/631 (9%), Positives = 132/631 (20%), Gaps = 69/631 (10%)

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
             +++ V +     +V                     ++    +      +  L +     
Sbjct: 530  AVLAAVNDLFRRIMVPELGGLAYDEEARLNPGAPYPDLPPGASGGEAPVEVYLLERKPEA 589

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
              +    +  G    +  G     +       T   R         P        +++ E
Sbjct: 590  LDEDWPDRLEGGAGFDPAGSLPPGTAGARTGGTGTRRADPEETPAEPPAGDEDDGLSVEE 649

Query: 364  ADNE---REEAISIAIALRMSLDENKKK---------------------SALITADRNLA 399
            A +     +EA  +A  +R  ++   ++                       L+ + R  A
Sbjct: 650  AADLTALEQEARLVAWRIRELVEGTGRQPPLLIWDPEQNAYRPVRYRDVVVLLRSARLRA 709

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
                  L R G+ +   +           ++ +LL  +      +A+A +++ P+   G 
Sbjct: 710  STFVEVLDREGVPVYSRSRTGYLVAPEVEVMLALLQVLDNPRQDIALAAVLRSPVVGLGA 769

Query: 460  PEKYLSRAK-----------NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
             +    R                               DL+ L   + A    +      
Sbjct: 770  RDLARIRLAGPGLSFYEAACRVAGWDPEAEAPVGAAGQDLEGLSPSQDAGSAAHGRSAAG 829

Query: 509  QSRLS----EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                +     E         D +   +   +   +   S      +S   +        +
Sbjct: 830  VDAGASTTVREAGGDGEAAQDPLAARLRRFLADLSRWRSAARRYPLSRVIQQLYDETGIL 889

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                                             +         +  R  D  T     E 
Sbjct: 890  AYVSGLPAGEQRRANLEALRDRARQFDQFARQGLFRFLRFIDRLRERGDDLGTAPALGEN 949

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF---------LSRVMQSDLNLK 675
               + ++   +S+ L F  +++  L                           ++      
Sbjct: 950  DDVVRVMTIHQSKGLEFPVVVVADLGVEFQFDRGHALIHRDLGLGLKVADPDLRIRYPSL 1009

Query: 676  TAEKYIGQAAHD---------FEMANGTRHLIYTR--SLRENNIPTIASRWLQRLLVLGG 724
              E    Q   D         +      R  +     +                 L  G 
Sbjct: 1010 AYEAVRTQQRLDTLAEELRILYVALTRARERLILVGSARDLPASAARWWAAAGGALAGGD 1069

Query: 725  TDFFDNLKKRGQCYLDW----------TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
                    +    YLDW             L      P    P       A+    S   
Sbjct: 1070 RPLPAEAVEGATRYLDWLGPALIPHPDAAPLRQLAMAPSPLEPAAGSEGLAREGWTSRWR 1129

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                +  P    A         P   +    
Sbjct: 1130 WTVWLRPPATPGAAAGPSAVPGPQDPESIHA 1160


>gi|302542686|ref|ZP_07295028.1| putative ATP-dependent DNA helicase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460304|gb|EFL23397.1| putative ATP-dependent DNA helicase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 620

 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 57/502 (11%), Positives = 122/502 (24%), Gaps = 43/502 (8%)

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
           R +   N   +PH     +    E+       +      +  ++  +    G ++ +   
Sbjct: 137 RESWTANAKVLPHALRGDAATLPEVTAWDAKGLNAFKDAMKEHQRTEELRLGYVTFTRPR 196

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            L +         + R      F E  +T        +E  +       E   +     D
Sbjct: 197 SLLLGSGHWWGPSQKRHRGPSSFLEALRTHCEAGYGEVEAWADEPEEGAENPALRETAAD 256

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                P   ++                      G          A++         +   
Sbjct: 257 RAWPLPLDPEALARRRRAADAVLAHLTRLEAADGPPAADPHGPVAEDDPAWPEFTDE--- 313

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
                Y  + A+ ++                                 G     D   + 
Sbjct: 314 --PYPYEDEEAYPYDAPPDAPDPYDEAYDGPYGDEHTYPHNPPPAPDGGPAPDGDLAPEE 371

Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
            +    W R LD    +   +R +        P T + S++ +L  DP    AR + +  
Sbjct: 372 ARLADSWDRDLDALAGE--LRRARATVHEVPVPHTLTASQLMRLAADPDGF-ARELARPM 428

Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
             P          RGT FH  +    +                +                
Sbjct: 429 PRPPQ----PAARRGTRFHAWVESRFEALPLPF----------LGPDELPGGEDDEPEIA 474

Query: 855 IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK----- 909
             R     +  +F       +       V +P ++ +      + G  D +         
Sbjct: 475 DERE-LTALKEAFARTPYARR---TPYRVEVPFQLTLAGR--TVRGRIDAVYREPAAGAG 528

Query: 910 SGF-VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968
            G   +I D+KTG +      Q     QL++   A               +  ++ ++  
Sbjct: 529 DGQGYEIIDWKTGRS------QDADPLQLAIYRLAWAE---QHGLPLSAVSAAFLYVRSG 579

Query: 969 FKIDCITNDKKKYSADELSEKS 990
             +       +      L+ ++
Sbjct: 580 EVVRPAELPGRAELERILTGEA 601


>gi|209521793|ref|ZP_03270474.1| UvrD/REP helicase [Burkholderia sp. H160]
 gi|209497763|gb|EDZ97937.1| UvrD/REP helicase [Burkholderia sp. H160]
          Length = 471

 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/442 (11%), Positives = 123/442 (27%), Gaps = 66/442 (14%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE----------------ITGKKS 72
           TL        +       + +   ++RA  E+                         +  
Sbjct: 69  TLAHRVANLVVKGADPQRILLLTFSRRAALEMTRRVTRITGAAAATAGTPSVGTALAQGL 128

Query: 73  TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
           T      S+G     +   +      L P  +   R    A L+ + R++L    K+   
Sbjct: 129 TWAGTFHSVG----ARLLREYADLIGLVPAFTINDREDS-ADLMNLVRHELGLSAKERRF 183

Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIA 191
            +  +     +  +    +L  +++      ++W +DL  L           +       
Sbjct: 184 PAKGTCFAIYSRVVNTGASLGHVLERAFPWCREWEDDLRRLFAAYVDAKQKQSVLDYDDL 243

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             YW+    E                     +      +++     +    A ++  +  
Sbjct: 244 LLYWSHMAAEP---------------AIAADLSARFDHVLVDEYQDTNRLQASILLALK- 287

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
            P+G  +    D       +   T ++     +       P      L            
Sbjct: 288 -PDGRGLTVVGDDAQSIYSFRGATVRNILDFPTQFE----PPARQVTLERNYRST----- 337

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
             G +         + S+ +     +D  +                   L+   ++  +A
Sbjct: 338 --GPILAASNAVIELASERYTKNLWTDKASAQRPR--------------LVTVADDAAQA 381

Query: 372 ISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
             +   +  + ++    K  A++    + +  +++ELTR  I      G+    ++H   
Sbjct: 382 RYVVEQVLEAREQGVKLKSQAVLFRAAHHSAALEIELTRRNIPFVKFGGLKFLDSVHVKD 441

Query: 430 LTSLLNAIFKLNDFMAIATLVK 451
           + ++L       D +A   +V+
Sbjct: 442 VLAVLRWAENPRDRVAGFRVVQ 463


>gi|149916945|ref|ZP_01905446.1| ATP-dependent DNA helicase, UvrD/REP family protein [Plesiocystis
           pacifica SIR-1]
 gi|149822223|gb|EDM81614.1| ATP-dependent DNA helicase, UvrD/REP family protein [Plesiocystis
           pacifica SIR-1]
          Length = 1027

 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/503 (7%), Positives = 117/503 (23%), Gaps = 45/503 (8%)

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS--PVGYQIALMRAEAEHLMK 224
           + + +L         +   + L  A      R+  ++ +      + +          ++
Sbjct: 325 DAVASLGEIDLAQRVVALLETLSRAYAAEKARVGAMDFADLVRGAHDLLRDDRVVRAQLQ 384

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHP------------------NGAIVLPGLDCHI 266
              G +++     +      L+  +A                              D   
Sbjct: 385 RRVGALLVDEFQDTNGLQLDLVHLLAEERSQQRAVPRGARASACLPLAARTFAAVGDRKQ 444

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               +           ++           LA L      +   V+    + +++      
Sbjct: 445 SIYEFRGADVALFQSLAARARAGEEGL-RLAALRRSWRSRPGLVRFANALFDQLLISDDP 503

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
              +    +  D  +    ++++         +    + + R      A  L   ++   
Sbjct: 504 AGFAVDWIEEVDALSPVREDHELQAGIPAVQLLIGDPSQDARVRRGHEAARLAEHVERLI 563

Query: 385 ------------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
                                  A++        R +  L+  GI   +  G        
Sbjct: 564 AARPPLGRADREGTPQPLRGADVAILMRTHGHVARYRRALSERGIASVVVGGRGFFAARE 623

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              L +L+ AI    D +A A + + P+              +A+ +           + 
Sbjct: 624 VRELVALMLAIADPGDALASAAVWRSPVWGIDDDSLVALAVADAVAMRHHVEGCGVEGLP 683

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
              +  +  +    +  H    +         +    VD +             +     
Sbjct: 684 TRDAAAVTHMGRLVDRLHHELDR----LGPARVLRFAVDRLGVREVLAWDDAGEQRIANV 739

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
           +  +          +                 +         +        +  +A + +
Sbjct: 740 DKLLDLLGSREFAGVGAQAAARRLLERGEDLLDREAPAEVAAAADPNAVRIMTVHASKGL 799

Query: 607 DIITRLIDGETVKPKIEKSSTLF 629
           +    ++     +P+ ++   +F
Sbjct: 800 EFPVVVLPELGAEPRGQEGPVVF 822



 Score = 39.1 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 72/814 (8%), Positives = 174/814 (21%), Gaps = 20/814 (2%)

Query: 8   VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67
           V      +     ++   L              PL    V     T++A +ELR   +  
Sbjct: 28  VLAAGAGAGKTHALVTVALGLYAGTPGEAGGRAPLEPTEVWAVTFTEKAARELRQRIVAR 87

Query: 68  TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
               +       +     E +  A L  +         I   L LA  I  + +    ++
Sbjct: 88  ASALARDPEGALA----DEPELVAMLGDARPSAGRWRAILEQLPLAP-IGTFHSLCAQVL 142

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
           +    E+ +            A+ L  ++D +   E +  D H     +           
Sbjct: 143 RSYAVEAGVDPSFEVLEENGAAELLDGVLDEVLLRELEDPDSHTRAAARALGGPEQLRTA 202

Query: 188 LKIASKYWTERLVELN--ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
           L+       E   +         G               G     +         +    
Sbjct: 203 LRRLHAKLGEEGRDPRSLLVDADGRAQRGFDRAMARAELGDACEELGEALALLRESKEDR 262

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           +              G       A W     +  +      T     +          + 
Sbjct: 263 LRPTLRALAIEDDRIGGCEAHAVARWYPALVRVASQRRGKGTLPKRAKRVWEPFAAAWER 322

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
            ++ V  LG +       +++ + S                + +        D  ++ A 
Sbjct: 323 VQDAVASLGEIDLAQRVVALLETLSRAYAAEKARVGAMDFADLVRGAHDLLRDDRVVRAQ 382

Query: 366 NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            +R     +    + +         L+  +R+  R V             SA +PL+   
Sbjct: 383 LQRRVGALLVDEFQDTNGLQLDLVHLLAEERSQQRAVPRG-------ARASACLPLAART 435

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
            +++     +        +A+       LA      +   R          R     +  
Sbjct: 436 FAAVGDRKQSIYEFRGADVALFQ----SLAARARAGEEGLRLAALRRSWRSRPGLVRFAN 491

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
                L++           +    +     +       +  +   I         +    
Sbjct: 492 ALFDQLLISDDPAGFAVDWIEEVDALSPVREDHELQAGIPAVQLLIGDPSQDARVRRGHE 551

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
               +++  +  +     +   +    P      +   L      +      +    I  
Sbjct: 552 AAR-LAEHVERLIAARPPLGRADREGTPQPLRGADVAILMRTHGHVARYRRALSERGIAS 610

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
           + +  R         ++                       + G+++         +    
Sbjct: 611 VVVGGRGFFAAREVRELVALMLAIADPGDALASAAVWRSPVWGIDDDSLVALAVADAVAM 670

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
           R       ++        A           H    R      +     R   R ++    
Sbjct: 671 RHHVEGCGVEGLPTRDAAAVTHMGRLVDRLHHELDRLGPARVLRFAVDRLGVREVLAWDD 730

Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                +    +       +           R       +   R            +   +
Sbjct: 731 AGEQRIANVDKLLDLLGSREFAGVGAQAAARRLLERGEDLLDREAPAEVAAAADPNAVRI 790

Query: 786 YARRI-LKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                   L+F      +     RG     +   
Sbjct: 791 MTVHASKGLEFPVVVLPELGAEPRGQEGPVVFER 824


>gi|311696604|gb|ADP99477.1| exodeoxyribonuclease V, beta subunit [marine bacterium HP15]
          Length = 1234

 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 93/824 (11%), Positives = 202/824 (24%), Gaps = 115/824 (13%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-----------I 231
              +D L+ AS +  ERL              L+    + L       +           +
Sbjct: 347  AKSDILRHASHWMAERLESEKQKRSEMGFDDLLTRLDDALHGPRGDQLAATIRRQFPVAL 406

Query: 232  IAGSTGSIPATARLMSTVANHPNG---AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            I     + P   R+   + N   G     +L   D       +      +          
Sbjct: 407  IDEFQDTDPVQYRIFDRIYNVSGGDSGTCLLMIGDPKQAIYGFRGADIYTYLQARQGVKE 466

Query: 289  STHPQ-----------YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
             T+              ++ ++ D  D    D   L    +        +  +      S
Sbjct: 467  RTYTLGKNFRSAKTMVAAVNRVFDHSDQNSRDGAFLFGKGDTSPLPFQGVDANGTKRSWS 526

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREE--AISIAIALR---------------- 379
                         +       VA   A  +  E  A  IA  L                 
Sbjct: 527  INGEVQPSLVFWTHESGEEEGVAKGAARADMAETCASEIARLLTLGQAGQAGFALPDNPS 586

Query: 380  MSLDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                   K  A++  +RN A  V+  L  R   ++ +S    + T+  S  +   L A  
Sbjct: 587  DLEPVAPKDIAILVNNRNEASAVRDALGQRRIKSVYLSDRDSVLTSRESQEILCWLRAFA 646

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
            +      I   +  P     +           +    +            + ++      
Sbjct: 647  EPRQLAYIRAALATPTLGQSWHAMNQLLTDELVLEREIERFIGYQQQWQKQGVLPMLRTF 706

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
              +         R   E +             +T ++            L          
Sbjct: 707  LMDFEVPGQLLQRPDGERR-------------LTDILHIAELLQQDSLQLDGEHALVHHY 753

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID-GET 617
            T +     +E          + G  L  + +     G       + +        +    
Sbjct: 754  TQILRAADEEDEHRTLRLESDAG--LVKVITVHKSKGLEYPLVFLPFGTAFRAQSEKQAF 811

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN---- 673
            V+   E+   + +       +   D   L G +   +     +  F + V  + L+    
Sbjct: 812  VRYHNEQGRLVTVFDPSPDDVARADRERL-GEDIRKFYVALTRARFATWVGTAALDNWQQ 870

Query: 674  -----LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
                 L  +E     +    ++A G   +  T     ++       +        G    
Sbjct: 871  SGLGYLIGSEGQSRISDCLGKLAEGRAEIRITPLPDPDDTH-----YHGPAPEALGPAMV 925

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
             + + R   ++     ++YT                A       ++ + L+ +       
Sbjct: 926  SSREAREDWWIASYSSIEYTGMT---------GTGIAFTGEVEDAQTQNLLEESTLDEEE 976

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK--- 845
               ++    +    P     GT  H ++    ++   +       L +Q+      +   
Sbjct: 977  NPAQMANQRNQHNFPKGAGPGTFLHELLEWCTQQGFQRVVDNPPLLHEQLTRRCGTRGWN 1036

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH-------- 897
            E + P +  +   +   +S      E    S +  +   +       ++ I         
Sbjct: 1037 EWVEPLVRWLLALISKPLSLDRAGAETVCLSDLTTLRPELEFWFESRNVSIRKLDELVTA 1096

Query: 898  -------------------LTGFADRIDLLKSGFVDITDYKTGD 922
                               L GF D +    +G   + DYK+  
Sbjct: 1097 HTLNRADRPRVEETRFNGMLKGFIDLVFEH-NGRYYVLDYKSNT 1139


>gi|320451177|ref|YP_004203273.1| ATP-dependent DNA helicase [Thermus scotoductus SA-01]
 gi|320151346|gb|ADW22724.1| ATP-dependent DNA helicase [Thermus scotoductus SA-01]
          Length = 872

 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 100/976 (10%), Positives = 235/976 (24%), Gaps = 159/976 (16%)

Query: 43  LLASVTIYVPTKRAIQELRSEFI-----------EITGKKSTILPIIKSLGDVVEE---- 87
            L  +     T++A +ELR                   ++     +  ++   + E    
Sbjct: 29  PLRRMAAVTFTRKAAEELRRRIQGEVIRLSSASWAEEAQREVYGAVFTTIHGFMAEAIRH 88

Query: 88  -KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
                 L   + L   +      LE AR +L  +   P +   L              A+
Sbjct: 89  TAPLLSLDPDFALLDELLAEALFLEEARSLLYLKGLDPALEGSLLALYRKRSLAGAFRAL 148

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             A+ L ++   +                            L    +   E L   +  +
Sbjct: 149 PGAEGLLELFQEV----------------------------LSGYHRRTREALGPGDLEA 180

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                +   +A    + +     +++       P   R    +     G  V+   D   
Sbjct: 181 LALRLLEHPQAVRRVVERFPY--LLVDEYQDVNPLQGRFFRVLEEA--GVQVVAVGDPKQ 236

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
              ++     +                + LA+           +            R  V
Sbjct: 237 SIYLFRNARVEVFRQALKEAAEV----HRLAETRRHAKAVARFLNCFVERFFPEPERVPV 292

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
           +                         ++    V  + A   +  A               
Sbjct: 293 VPLREEEGLVEVHWVVGEGGLPEKREKEAALLVERLAALQGQGHA--------------Y 338

Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF-----KLN 441
           ++ A++   R     ++      G+   +  G           +   L            
Sbjct: 339 REMAVLVRSRASLPFLERAFRALGVPYVLRRGQSFFKRPEVRDVYHALRLALLEGPPSPE 398

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
           + +++   ++ P       +                  +    +  L   V  R+   K 
Sbjct: 399 ERISLLAFLRGPFVGVDLGQVE-------------EALQAEDPLPLLPPEVRMRLDGLKT 445

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
              +   ++  +    E+ +  +    +     +     +       ++ +W K+     
Sbjct: 446 LAGLRPLEALKALVRDEVFLRRLSRRARANLDTLLLLAAEERFPDLEALLEWLKVRAEDP 505

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
           +   L E  +   L      K L                                     
Sbjct: 506 ETSELPEGGEGVQLLTVHAAKGLEW----------------------------------- 530

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                 + +           + +++ GL+  V  + T     L R +          +  
Sbjct: 531 ----PVVAVFDLARHEGGRSEPVLV-GLDGEVALEGTEGYQNLRRTLARA-------QEE 578

Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                 +   +  R ++       +  P   +  L  L +          +         
Sbjct: 579 ESLRLLYVALSRARDVLLLT-GSLSERPGPWAEALMDLGLGPADQDPLVHRHPLAGLPPL 637

Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                    QP     +   P +  P  +S S  ++   +P A+          +     
Sbjct: 638 PSPPLLPEPQPPAPYAEHLIPSKRFPPVFSPSAYRKGEGEPLAL-------SQALEAETL 690

Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF- 860
                  GTL H  +    +     +   +  L+ Q +   F +E     +  +   L+ 
Sbjct: 691 PEYPRALGTLVHYAL---ARNLDPGDEGAMRALLLQEVAFPFPEEEQKRLLAEVRLLLWN 747

Query: 861 -HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
             ++    L   E  +         +P  + +        G  DR+  +      + DYK
Sbjct: 748 HRRMLGEVLPALENREED----HAELPLVLPLAGTVW--YGVLDRLYRVGD-RWYLEDYK 800

Query: 920 TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979
           T     +  A +    QL+L   A++            A L Y+R ++          + 
Sbjct: 801 T----DQRMAPEHYRLQLALYWEAVRR----AWGVEAEARLVYLRHERVHVFSPEELQEA 852

Query: 980 KYSADELSEKSLKNLI 995
               ++      + L 
Sbjct: 853 LRELEKAPGILSQGLE 868


>gi|186684554|ref|YP_001867750.1| UvrD/REP helicase [Nostoc punctiforme PCC 73102]
 gi|186467006|gb|ACC82807.1| UvrD/REP helicase [Nostoc punctiforme PCC 73102]
          Length = 805

 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 79/771 (10%), Positives = 196/771 (25%), Gaps = 55/771 (7%)

Query: 1   MHNKKPNVFTIA--PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQ 58
           M +       I+  P +     M  A       +  RY    P     + +   T+ A  
Sbjct: 46  MADWGSGPLAISAVPGAGKSTGMAAAAAIAIARQYERYAQSRPSSRRHLVVVTFTRSAAA 105

Query: 59  ELRSEFIEITGKKSTILPI----IKSLGDVVEEKFTAD---LLLSYNLNPPVSNIQRLLE 111
            ++++      +    LP     + +L  +     +       L       ++  Q    
Sbjct: 106 NIKAKI-RKFLRDDLSLPQTGFFVYTLHGLALNIASRYSDLSGLQLENVTLITPTQSHRF 164

Query: 112 LARLILIWRN-------KLPDIIKDLYPESPLSLPISPANAIWLAKNLADI-IDIIETEE 163
           +   +  W         +L +  +    E+      S      L   LA+  I   ++  
Sbjct: 165 IRSAVEQWIANNPGIYLRLLEGHQFDGEETERLRRQSVLRTEVL-PELANTVIHEAKSSG 223

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----A 219
              E L     +    +            + +   +   +        +A +R      A
Sbjct: 224 ISPEKLREWSKQTTDEY--TILSVAAGLYEQYQNLMRSRDFIDYDDMILAALRVLENDSA 281

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
             + +     +    +  S P   +L+  +A+          L  H    +         
Sbjct: 282 RRIEQNQVFAVFEDEAQDSSPLQTQLLEILASDGYKGDKSSILTPHSSLNLVRVGDPNQA 341

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
             ++        P Y      +   I+R         S  +   +   +  ++   +   
Sbjct: 342 INSTFTPAD---PIYFRHFCEECDRIERLATMDQAGRSTRIIIEAANFALKWINNQSLAK 398

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
            N      +   +      +  +E  + ++ A               +   L T      
Sbjct: 399 TNNGQQTPENRQVPFRLQTIRPVETGDPQKNANPA---------PIGQGLELYTPRDIHH 449

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
                 L++  I +      P   +        +           A+A + K        
Sbjct: 450 TVEL--LSQRVIELFGED--PTQNSAAI----LVRENRQGRWLAEALAPVCKEHNITLYD 501

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
             +   R+    E++AL    +     D     L+ +  ++              E+   
Sbjct: 502 VGERDRRSHVPQEILALLQFCDRPHSPDYLKAALEALVQRQLIPTQDLNALASLPEEFLY 561

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
              L     + +        N       L +          L     +            
Sbjct: 562 PGPLAAPQAETVQKAARLCRNLLRARLELPLYQLISFLALTLNYDQAELATADKLAERVN 621

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
           +    +S    ++   S I ++           ++ E  + +  +   L I+   +++ L
Sbjct: 622 QQIAGNSSMRGMLSALSEIVSSERF------EPVETEDSEERYTRRGQLTIITMHKAKGL 675

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
           ++D + L  L+E + P       ++    Q   +   +E    Q        +    +  
Sbjct: 676 DWDYVFLPFLHENLIPGR----FWVPPQSQFLGDFTLSEVARAQIRAALHGESTIPDVTQ 731

Query: 700 TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
                ++   +   R L   +       + +  ++          L     
Sbjct: 732 AWEQAKHLKISEEYRLLYVAMTRAKRLVWMSAAQKAPFTWSKPENLQEQAP 782


>gi|251796231|ref|YP_003010962.1| recombination helicase AddA [Paenibacillus sp. JDR-2]
 gi|247543857|gb|ACT00876.1| recombination helicase AddA [Paenibacillus sp. JDR-2]
          Length = 1277

 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 70/703 (9%), Positives = 154/703 (21%), Gaps = 116/703 (16%)

Query: 56  AIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELA 113
           A   L             +   P   +  +         ++        +   +   E  
Sbjct: 237 AASLLNQAMQLTREPAGPA---PYAATFEE------DLAIVGGLAETVRMHPWEMWFESF 287

Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD-IIDIIETEEKKWEDLHAL 172
           + +  +         D               A  L  +LAD +      E        A 
Sbjct: 288 QAVQ-FGKLKAMRGDDYDKTMQEQAKELRDQAKKLISSLADELFGRSAEE-------FAW 339

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG------- 225
           + ++        ++ +    + +               +   +R                
Sbjct: 340 ELQELAPLMAALSELVIEFGQRYEAAKRSKGLLDFGDLEHYCLRILRAPESTPELTTPSP 399

Query: 226 -------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                      I++     +      ++S +AN   G   +   D       +       
Sbjct: 400 AATEYQRQFDEILLDEYQDTNMVQEAIVSLIANPHAGNRFM-VGDVKQSIYRFRLAEPNL 458

Query: 279 T------NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN----------------- 315
                                 +    L+ +D   +  + +                   
Sbjct: 459 FMSKYKNYGAPGGDGLRIDLARNFRSRLEVVDGVNDVFRAIMRETVAEMDYDKRAELVCG 518

Query: 316 ---VSNEMYGRSMVISKSFLPP---DTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                 ++ GR  V           +  D   +    +         +  +  E    + 
Sbjct: 519 ASYPEPDLPGRFAVELAVIDKAGSSNEEDGAVSPADSDDESEQGAGPAAESAEELQTAQL 578

Query: 370 EAISIAIALRMSLDE---------------NKKKSALITADRNLARR-VKLELTRFGINI 413
           EA  IA  +R  LDE                 +   ++          +  EL   GI  
Sbjct: 579 EARLIARQIRSLLDEGFRVYDGKKRESRPMEWRDIVILLRATQAWAPVIIEELQGAGIPA 638

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
                           + SLL  I      + +A  ++ P+      E  L R     + 
Sbjct: 639 YAELSSGYFDATEVETILSLLRVIDNPYQDIPLAGTLRSPIFGLNAEELALIRIGAMQDT 698

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                         L++     +  +         +      +      L D I      
Sbjct: 699 YYDAV---------LQAAGDLLLPDELRRKLSLFLERLDRWRNDARQGSLADLIWSIYRE 749

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
              Y        G    ++   L     Q            L F E          ++ +
Sbjct: 750 TGYYDFAGGLPGGVQRQANLRALHDRARQYEATSFRGLFRFLRFVE----------RMRD 799

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
           +G  +                  T +   E+ + + I+   +S+ L F  + + GL +  
Sbjct: 800 SGGDL-----------------GTARALGEQENVVRIMSIHKSKGLEFPVVFVAGLGKNF 842

Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
             ++        + +         EK +      F        
Sbjct: 843 NQQDLRSAFLKHKQLGFGPKYIDPEKRVSYPTLPFLSIRRRMR 885



 Score = 47.2 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 39/327 (11%), Positives = 81/327 (24%), Gaps = 34/327 (10%)

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
            L          +         V  + L L+ A     +   D    +  + +  + +  +
Sbjct: 959  LPDETVPGHEDSRLLQWRAGVVDAAMLGLEAAIGVEERTEEDQAREDRMQGV-LSLAQLD 1017

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                    R                 K           +     +      P        
Sbjct: 1018 QVEQDEELRNRLEWRYGYRASTLVAAKTSVTEMKRLHSEAVEMPEDSAALYPADTFSDRQ 1077

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
            Q      S         Y    RR          +      ++GT+ H ++  L     +
Sbjct: 1078 QEDGKKSSGGGS-----YTFRLRR-----PRFMEEAALTAAEKGTVSHLLMQHLPLAG-D 1126

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
             +   +  ++  ++            ID         ++  F     K     + +   +
Sbjct: 1127 VDVDRLGSILSDMVSRKLLTARQADSID------LPAVAAFFDTEIGKRLVHAKWVRREV 1180

Query: 886  PAKMAIE-------------SIGIHLTGFADRIDLLKSGFVDITDYKTGDN--PKKETAQ 930
            P                      + + G  D +   ++G + + DYKT      + E A 
Sbjct: 1181 PFSCMFPAQRVYPGLAADMAGEPVLIQGVIDCLFEDENG-IVLLDYKTDRIYMKQWEQAA 1239

Query: 931  KLIDPQLSLEAAALKAGSFSQIDCRKV 957
            +    QL L A A+++     I    V
Sbjct: 1240 ERHRFQLELYAEAIESVIGQPIAESHV 1266


>gi|297568687|ref|YP_003690031.1| exodeoxyribonuclease V, beta subunit [Desulfurivibrio alkaliphilus
            AHT2]
 gi|296924602|gb|ADH85412.1| exodeoxyribonuclease V, beta subunit [Desulfurivibrio alkaliphilus
            AHT2]
          Length = 1303

 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 95/935 (10%), Positives = 208/935 (22%), Gaps = 135/935 (14%)

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-------IIAGSTG 237
             + L  A +    RL      S       L RA         +  I       +I     
Sbjct: 379  QELLAFARRELPARLAAAGLQSFDDLLYGLERALRGPGAAALRRFIGSRYPVALIDEFQD 438

Query: 238  SIPATARLMSTVANHP------NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
            + P    +   V           G  ++   D       +      +    + +     +
Sbjct: 439  TDPVQYSIFQQVYGQHVAGGREEGRRLILIGDPKQAIYAFRGADIFAYLQAAQDAGEQRY 498

Query: 292  -------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                       L   ++ L         +  +              +    ++   +   
Sbjct: 499  TMTINWRADRRLVAAVNALFQPVAQPFVVPGIDFPAVTARPDAPDLWRETTSAGEEDEQP 558

Query: 345  LENKIPNI---------QKCFSDVALIEADNEREEAISIAIALRMSLDENKK-----KSA 390
            L+  +P                  + +E       A  I   L  +    ++       A
Sbjct: 559  LQFLLPPPKLAERLNSGPGRLPARSRVEKAVPNLVAADIVRLLEGAGSLGERGLRPADIA 618

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL-TSLLNAIFKLNDFMAIATL 449
            ++      A  V+  L R G+   + +   +  +  +  L   L   + +  +    A +
Sbjct: 619  VLVRSNQQAALVQHALQRRGVAAVLHSRESVFQSTEARQLSILLHGLLGQAGEPQRRAAM 678

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA-----TQKNNTH 504
            +   L      E              L        +   +  +    A            
Sbjct: 679  L-SGLLGCTRAELESLEEDEQQWQSWLLRFTRWSRLWSERGFMAVMRAIGEEQEMPARLL 737

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQC-ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                  R     + LA LL +   +  + P    K       G    S++ +L +   + 
Sbjct: 738  NHPNGQRRLTNFRHLAELLHNQEREAHLQPPALLKWLDEGIAGLRPGSEFDELRLESDEE 797

Query: 564  VCLD----------------------EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                                        RK                +   I      +  
Sbjct: 798  AVQVLTIHRSKGLQYPVVYCPYLWKTGKRKNEEKDKFFTFHDPDDHWQGKITLQPDDEQR 857

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                 ++    +    V     +     +    +    +    +L G  +G  P +    
Sbjct: 858  QARRRELFAEDLRLLYVALTRARHCCRAVWFGADGYQESALAYLLHGGEQGHPPADLTGL 917

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFE-------------MANGTRHLIYTRSLRENNI 708
             F     +    +     +  Q A                  A         R ++    
Sbjct: 918  SFAELQQRLHRRVANEPDWGLQTASAETIPAPPQHGQVQKPSAAAAADPTRLRQMQTTID 977

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                      L+           ++      D    +   +     +        +A   
Sbjct: 978  TAWRVGSFSHLIARASELNATVSERDYDAAADAAATVAGDSAGAAARTATGDSDGDAAGD 1037

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT----------- 817
                + +      P +      L+L         P     G L+H I+            
Sbjct: 1038 RGGAAPVTAAGAPPVS------LRLAARVPLADLPAGAAIGNLWHRILELISFQQPDQHQ 1091

Query: 818  -------ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
                    +      +  P +   +  I+D+           DI      ++++  F+  
Sbjct: 1092 EIIAEQLRIFGVDRRQWQPVLEEALATILDTPLTAAEPFRLADIKDTERLNEMA--FIGP 1149

Query: 871  EEKIQSSIEKIFVNIPAK----------------MAIESIGIHLTGFADRIDLLKSGFVD 914
              +    +E   +    K                +   ++  +L GF D I   ++    
Sbjct: 1150 VRQQDQPLEAADLARVFKQFPENLPPGYADRLAQLRFPALQGYLKGFVDLICRWQN-KWY 1208

Query: 915  ITDYKTGDN-PKKETAQ----------KLIDPQLSLEAAALKAGSFSQID----CRKVAN 959
            + DYK+    P     Q               Q  L   AL      ++      +    
Sbjct: 1209 VIDYKSNLLGPTHADYQPANLLPAMSNHHYILQYHLYTLALHRHLAQRLPDYDYDQHFGG 1268

Query: 960  LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
              Y+ L+                      ++L  L
Sbjct: 1269 ALYLFLRGLHPDLGPAAGIHHERPPRQRIEALAGL 1303


>gi|51244734|ref|YP_064618.1| ATP-dependent DNA helicase II (Rep) [Desulfotalea psychrophila
           LSv54]
 gi|50875771|emb|CAG35611.1| related to ATP-dependent DNA helicase II (Rep) [Desulfotalea
           psychrophila LSv54]
          Length = 770

 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 74/692 (10%), Positives = 162/692 (23%), Gaps = 99/692 (14%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77
            R +  +    T+VE         +  + + I +  + A     +   +   K     P 
Sbjct: 21  VRAVAGSGKTTTMVERVAVLLARGVDPSHIMILMFNRSARDAFAASLKKRLRKTGYRGPE 80

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
           +++   +                  V +  R   L       R    + +++        
Sbjct: 81  VRTFHALGLRL--------------VESFVRRGALP----AHRLVTEEGLRENLARRVGQ 122

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
             +    A  L  +L D +  I+  + K      +  E         A F++  S +   
Sbjct: 123 SLVGQGEAWSLRDDLEDFLTFIDLVKAKLASPAQVAREIGLPE--KFASFIEGYSLFEDL 180

Query: 198 RLVELNASSPVGYQIALM----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
           RL E            ++     AE    ++     II+            L+  VA   
Sbjct: 181 RLKEKIRFYSELINEPVLAMEEDAELRAWVENRVEHIIVDEYQDISNCQQGLLKMVAGSR 240

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
             A V+   D       W            S       P      L        +     
Sbjct: 241 --AQVMVVGDADQCIYEWRGAKP----EYISTLFAEDFPAPRDYTLSFSFRYGHQLSLAA 294

Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
            ++      +S  + +S      + +   +++  +   +     D      D+ R  A  
Sbjct: 295 NHLIAHNIDKSRTLCRSHPLNVNTQIFTAELVAGERHPLVGIVRDWQ----DSGRSRAE- 349

Query: 374 IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
                           A++     ++  V+L L   GI   +  G  +        L   
Sbjct: 350 ---------------IAVLVRLYGMSVPVELALLEAGIPYQLQGGRTVFRCPEILAL--- 391

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                     +         + +    E+     +  ++                     
Sbjct: 392 ----------IGYLRFCDGSIVEISGQERKALVQEMLVQPHLGLKKGQM----------- 430

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                    +      +  +     +   +  +  + +  L        +  G       
Sbjct: 431 ----EHLLVSITASPLAAPALILGLVNEAMPAYQRKRLARLSDCWQWLVAEPGEARADKV 486

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            K  V  L  +              E    +        E  +   A+ +        L 
Sbjct: 487 LKRLVARLD-LYAFYRDFASRQVSGENRIQICRSLIAFAEERARGVADFL--------LE 537

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                K     +  L I     ++   +  +IL GL EG +P             +    
Sbjct: 538 FDRLKKSDGAGADPLLITSIHRAKGCEWPLVILPGLEEGSFPFR-----------RQQKE 586

Query: 674 LKTAEKYIGQAAHDFEMANGT-RHLIYTRSLR 704
             +  +   +    +         L       
Sbjct: 587 SPSFTEVDDERRLFYVGMTRAIERLYLLHPRD 618


>gi|213692135|ref|YP_002322721.1| hypothetical protein Blon_1255 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523596|gb|ACJ52343.1| hypothetical protein Blon_1255 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 554

 Score = 55.7 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 59/218 (27%), Gaps = 28/218 (12%)

Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                      +P   SFS + + ++ P    A    KL   P           G + H 
Sbjct: 11  PAAGVARASLPRPGRASFSMLDKWMSCPARWAAE---KLMPKPRLWG--SPLVLGGIVHA 65

Query: 815 IITELIKKRINKNTPEIN------------HLMKQIIDS----HFEKENLPPHIDIIWRH 858
            +                              M+   D          +  P +   W  
Sbjct: 66  ALELACATPDVVAPDWRALCAKGVGVEYGRWRMRGWGDEPIPSGVAMPDGSPAMQDDWVA 125

Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                   F+  +   +  +E   +    +  ++ I   L G  D       G   + D+
Sbjct: 126 AAALKLSGFVLTDALGRV-LEPAALEQDLEADVDGIP--LRGAVD--YRDVDGT--VVDW 178

Query: 919 KTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
           KTG  PK   A++    QL L    L A    ++   +
Sbjct: 179 KTGGTPKYRDARRRHADQLRLYRLMLDADGVCEVRAAR 216


>gi|319791122|ref|YP_004152762.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315593585|gb|ADU34651.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 705

 Score = 55.7 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 65/545 (11%), Positives = 143/545 (26%), Gaps = 70/545 (12%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL     +   + +    + +   ++RA QE+                     G V+ + 
Sbjct: 63  TLAHRVAHLIADGVDPQRLLLLTFSRRAAQEMERR-----------------AGQVLAKV 105

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRN--KLPDIIKDLYPESPLSLPISPANAI 146
                     L    +        ARL+  +     L +            L     + +
Sbjct: 106 LGLKSERPPALPWAGTF---HGIGARLLREYAQQIGLDENFTIHDRGDAEDLMGLVRHEL 162

Query: 147 WLAKNLADI-----IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
            L+  +           I +         A   ++   W       LK     + E   +
Sbjct: 163 GLSSTVNRFPRKGTCLSIYSRCVNTRASVAEVLKEAFPWCGEWEAELKTLFGAYVEAKQQ 222

Query: 202 LNASSPVGYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
            N        +      AE  +          +++     +    A ++  +A  P+G  
Sbjct: 223 QNVLDYDDLLLYWAEMVAEPALAEAVGARFDHVLVDEYQDTNLLQASIL--LAMKPDGRG 280

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
           V    D       +   T ++     S        Q+S    +  L+      + + +VS
Sbjct: 281 VTVVGDDAQSIYSFRGATVRNILDFPS--------QFSREARVVTLERNYRSTQPILDVS 332

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
           N +  ++       L  D                         L+   +E  +A  +A  
Sbjct: 333 NRVIAQAAERHAKTLWTDKPSAGKPQ-----------------LVLVPDEAGQARWVADK 375

Query: 378 LRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
           +    +     K  A++    + +  ++LEL R  I      G+      H   L ++L 
Sbjct: 376 VLAHREGGLALKSQAVLFRTSSHSAALELELARRNIPFVKFGGLKFLEASHVKDLLAVLR 435

Query: 436 AIFKLNDFMAIATLVK----------HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
                   MA   + +            L          + A       +    + +   
Sbjct: 436 FAENPRGRMAGFRVTQLIPGIGPVTGTRLLDAMDQAADPAAAVRDFVPPSAAREQWAGFA 495

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
               +L    +A   +      W     E   +    +    ++ +  L     ++    
Sbjct: 496 EAYAALRAPSLAWPADVELAMGWYLPHLERLYDDTSGVRRQDVEQLVRLAAGYGSRERFL 555

Query: 546 GNLSI 550
             L++
Sbjct: 556 TELTL 560


>gi|171912577|ref|ZP_02928047.1| probable helicase [Verrucomicrobium spinosum DSM 4136]
          Length = 1067

 Score = 55.7 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 74/771 (9%), Positives = 189/771 (24%), Gaps = 111/771 (14%)

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM-----STVANHPNGAIVLPGL 262
              +    MR   E  M       ++     +      +M         +      V    
Sbjct: 352  AEHDWEAMRTALEFRMDAKYDHWLLDEFQDTSERQWEVMSPLLEEARQDPEERRSVFLVG 411

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
            D      +W     +  +   +  +               L+       ++  + N ++ 
Sbjct: 412  DVKQSIYLWRQAEPELFHHVETAWSGH-------RLQTTPLNESYRSCPQVLGMVNGVFL 464

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER--EEAISI---AIA 377
             +    ++  P      +  +   +         + +  + A +E   EE   I   A  
Sbjct: 465  NAERELEALFPGLGRLWKFEEHRCSARVAWLAGHAALVHVAALDEETTEEDGPITLGAAN 524

Query: 378  LRMSLDENKK--KSALITADRNLARRVKLELTRFGIN--IDISAGIPLSTTLHSSILTSL 433
            L   ++   +    A++      AR +   L R      I  S    +     +  L SL
Sbjct: 525  LIREINPIGRGLTCAVLVRSNRTARALSDALRRLLGMEVICESQENVVVDNPSTLALLSL 584

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            L       D  A                                     + +M      +
Sbjct: 585  LQVAVHPGDSTA-----------------------------------WEHLLMSPLREAI 609

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
            +     +            +E    +     + + + +               +  ++  
Sbjct: 610  NTQRLTRPALTARVRADLSNEGFLPVLQKWAEILRRAL--------PAQDAFTSRRLAQL 661

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWF---EEEGKTLSSLFSKIIETGSCIKANAIEWIDI-- 608
              L     ++   D    L         E+  +  ++    +     ++ + +   ++  
Sbjct: 662  LDLAADFDESGSRDVGEFLSTARDHSVREDSASAQAIQVMTVHQSKGLQFDVVILPELQG 721

Query: 609  --ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP-FLS 665
              +  +        + E+ +  ++L   E  ++  D ++L         +       F  
Sbjct: 722  EALDAVQRNRLFVARKERGAVSWMLDKPEKVVVERDEVLLTEQRREKARQAFEGLCRFYV 781

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             + ++ L L               +    + +  + +        +   +      L G 
Sbjct: 782  AMTRAKLGL--------------YVLLDPKKVRASNNEGRILAMRLEPGFDPVPYELVGV 827

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                  +   + +                  P        +         K L     + 
Sbjct: 828  GGLATWENGDRNWYMAHEVTKVQAPVASIAVPDANLGTLIRAV------NKPLERRAPSG 881

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                +L+   +    ++  +   GT  H + + +         P      K  + +    
Sbjct: 882  EESFVLRGGELLSTAREV-KRQHGTRVHELFSAI-AWLEEVPEPVALWKTKGWVAADVAS 939

Query: 846  ENLPPHIDIIWRHLFH--KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
            +            +    ++   F     +        +        IE  G  ++G  D
Sbjct: 940  DGSGDAAAEEVLRVISSPEVQPWF-----RKGGQQRTAWTERRFDY-IEKGG-WVSGIVD 992

Query: 904  RI--DLLKSG---FVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKA 946
            R+  +   SG      I D+KT     ++          PQL+L   A+  
Sbjct: 993  RVVVEWDASGKASRATILDFKTDAVVTEDDMAARAAGYAPQLALYVPAVMR 1043


>gi|15602381|ref|NP_245453.1| hypothetical protein PM0516 [Pasteurella multocida subsp. multocida
            str. Pm70]
 gi|12720777|gb|AAK02600.1| RecB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1230

 Score = 55.7 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 79/819 (9%), Positives = 193/819 (23%), Gaps = 122/819 (14%)

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI--VLPGLDCHIPTAIWNTIT 275
            E    ++      +I     +      + S +  H        +   D       +    
Sbjct: 393  ELAQFIRVQYPFAMIDEFQDTDAQQYHIFSKIYLHQQTTENGFIMIGDPKQAIYKFRGAD 452

Query: 276  EKSTNITSSNTTYS---THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
              +    +              S  +L++ ++   +  + L  +         V +    
Sbjct: 453  IFTYFQAAEQADARFTLGTNWRSEQRLVNAVNSLFQFEQGLPFLYP-QIQFLPVAACQNK 511

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---------- 382
            P    + +        + ++     +   + +  ++  A   A +++  L          
Sbjct: 512  PTFWLNGQQEPPFRCYVGDVGVAKKNSGNLTSAQKQTLATICARSIQQWLQSAVQHDAIF 571

Query: 383  --------DENKKK-----SALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSS 428
                    +E ++       A++  D   A  V   L + GI  + +S    +     + 
Sbjct: 572  YSAEAKQEEEKRQPLRAEKIAVLVKDWKEASFVSEALQKVGIASVYLSDKSNVFDCHEAQ 631

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
             L  +L A         I   +   +      E    +         +    N   I   
Sbjct: 632  ELALILTACLHPFSERNILNAIATRIFALTTREISEIKQDEQRWTQVVERFVNYQRIWQW 691

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
            + +++       +   +    S++  E                                 
Sbjct: 692  QGILVMLHRLFLDEKIMEKLLSQVGGE----------------RQTTDLLHLAELLQEAS 735

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            ++++     +   +     E+R+       E  + L  +    I     ++ + +    I
Sbjct: 736  TLNESAASLLRWFEKQIQGENRQEEQQIRLESERQLVKIV--TIHKSKGLEYDLVWLPFI 793

Query: 609  ITRLIDGETVKPKIEKSSTLFI-LGTLESRLLNFD-----------TLILGGLNEGVWPK 656
                     +           +     E+     +            + L      V   
Sbjct: 794  ADAPKPNRALLDTYYHHEKQQVLWDLNETHQTEIEQEQRAEAMRLFYVALTRAKYQVVMA 853

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD-FEMANGTRHLIYTRSLRENNIPTIASRW 715
                       +Q  L      +   +AA   F+       +      +      +    
Sbjct: 854  LPETFVSHWNCLQYVLTQGAMTQTDVRAALTAFQQRVVYPDVKI----QVEEFEALPIHL 909

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWT-------RKLDYTTKQPHYKRPK---PFPPLEA 765
               +            +  G    +W          L   T Q   +  +   P      
Sbjct: 910  STSIKENSADQVLQCAEFHGNIERNWQVTSFSAISALHEKTMQLLTQAEEEKTPDVSFLL 969

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
              + Y  S  + +   P A  A                     GT+   ++    +K   
Sbjct: 970  DHKDYDVSLGRNVALVPVAEMAGYSKGYTPFDFPA--------GTMVGKVLHRYFEKFPL 1021

Query: 826  KNTPEINHLMKQIIDSHFEKENLPP-------------------HIDIIWRHLFHKISHS 866
                +   + +       E+  L P                    +  +      K    
Sbjct: 1022 DQPVDRAAVAQMCQALQLEETWLEPLQTWLTTILNTPLLREHPVTLSALSAQDCIKEMEF 1081

Query: 867  FLEHEEK-IQSSIEKIFVNIPA-KMAIESIGIH------LTGFADRIDLLKSGFVDITDY 918
            +L+ E +       ++          ++   +       L GF D +     G   + DY
Sbjct: 1082 YLKFEHEFQAHKFNQLLQKYRFISAPLQLHTLKQGIKGLLRGFIDLVFRY-DGQYYLLDY 1140

Query: 919  KT---GDNPKK------ETA--QKLIDPQLSLEAAALKA 946
            K+   G +P        +    ++  D Q      AL  
Sbjct: 1141 KSNKLGTSPSDYAPAHLQQVMLEQHYDWQYLFYTLALHR 1179


>gi|104779936|ref|YP_606434.1| exonuclease V subunit beta [Pseudomonas entomophila L48]
 gi|95108923|emb|CAK13619.1| exonuclease V, beta subunit [Pseudomonas entomophila L48]
          Length = 1223

 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 102/1022 (9%), Positives = 232/1022 (22%), Gaps = 152/1022 (14%)

Query: 69   GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK 128
            G    +LP I+ L   V +        +          ++L +L     +W ++L  I +
Sbjct: 189  GSPDALLPRIRPLFGRVRDAQDDAEPQALIEATLRQRTEQLGQLKAPWGVWADELQQICR 248

Query: 129  DLYPE--------SPLSLPISPANAIWLAKN-------LADIIDIIETEEKK-------- 165
            D                           A +       L      + T            
Sbjct: 249  DAVAAKQADGRKLQARYFEPWFDKLRAWAGDEQAMELDLGTGFTRLTTAGMAEAWKSGEP 308

Query: 166  --------WEDLHALKNEKYGMWWLLAADFLKIASKYW---TERLVELNASSPVGYQIAL 214
                     E+L             L        S  +     R  E+     +      
Sbjct: 309  PDHPALRAMENLREQLQGLASPDVRLLEHAAAWVSARFEVEKRRRAEMGFDDMLLRLQHA 368

Query: 215  MRAEA----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIP 267
            + +EA      L++      +I     + P    +   +           +    D    
Sbjct: 369  LGSEAGERLAGLIREQFPVALIDEFQDTDPVQYGIFERIYRISENNPDTGLFMIGDPKQA 428

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL--DIKREDVKRLGNVSNEMYGRSM 325
               +      +       T    H   +  +    +   + R  ++              
Sbjct: 429  IYAFRGADIYTYLAARRATRGRLHSLDTNFRSSQAMVAAVNRVFLQAEARSEGRGAFLFR 488

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE------ADNEREEAISIAIALR 379
                + LP      +             +      L            +  A S A  + 
Sbjct: 489  AHGDNPLPFVEVHAKGRAEHLLVDGQPVEALHCWQLESDEPVSNTLYRQRLAASCASHIV 548

Query: 380  MSLDE------------------NKKKSALITADRNLARRVKLELT-RFGINIDISAGIP 420
              L+                        A++  D   A+ V+ EL  R   ++ +S    
Sbjct: 549  ALLNGGQQGVSGFADKDGKLRPCQPSDIAILVRDGREAQLVRAELAARDVRSVYLSDKDS 608

Query: 421  LSTTLHSSILTSLLNAIFKLNDFM---AIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            +     +  L + L A  + +      A    +   L                  ++  R
Sbjct: 609  VFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLDLPLIDLERLNQDERVWENWVMRFR 668

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
              ++++    +  ++   +   +    +              A    + +L  +  L   
Sbjct: 669  RYRDTWQRQGVLPMLRRLLHDFQLPRSLM-------------ARSDGERVLTNLLHLAEL 715

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                             +     L N       ++  L  +E+   + ++          
Sbjct: 716  LQQAAGELDGEQ--ALIRHLAEHLANAGQVGEEQILRLESDEQLVKVVTIHKSKGLEYPL 773

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +    I      ++ +DG+ +         +       +   + D +             
Sbjct: 774  VYLPFIC----TSKPVDGQRLPLAWHDDDGV----AHLTLTPDADQVERADDERLAEDLR 825

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
                          L +   ++   +++     A G                +    WL+
Sbjct: 826  LLYVALTRAQHACWLGVADLKRGTQRSSQLHRSALG----YLLGGGSALKTSSELGEWLR 881

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF----- 772
             L           + +                     +R        A            
Sbjct: 882  VLAAANPAIASGPVPEADAQCYRMPESQRELLPPRKPRRAAAEHWWIASYSALRVGDQTL 941

Query: 773  ----SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
                S+ +QL++D      +            + P   + GT  H ++     +   +  
Sbjct: 942  VADSSQAQQLLDDEVLDSLQLREVPAEAGDIHRFPRGPNPGTFLHGLLEWAGNEGFAEVA 1001

Query: 829  PEINHLMKQIIDSHFEKEN-LPPHIDIIWRHL--------------FHKISHSFLEHE-- 871
             + + L   +      ++          W                   ++    +E E  
Sbjct: 1002 AQPDRLEDTVARRCNRRDWKGWIPTLTQWLQQMLVQPMPLVDTSLTLAELGQYQIEMEFW 1061

Query: 872  -----------EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
                       +++        V  P     +  G+   GF D    L  G   + DYK+
Sbjct: 1062 FASHNVDAMQLDQLVVRHTHGGVARPGAQPTQLNGM-FKGFIDLAFEL-DGRYYVADYKS 1119

Query: 921  GDNPKKETA-----------QKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRL 965
                    A           +   D Q  L   AL     +++      R +    +I L
Sbjct: 1120 NWLGPDAQAYGPLAMEQAILEHRYDLQYVLYLLALHRQLRARLPDYDYDRHIGGALFIFL 1179

Query: 966  KQ 967
            + 
Sbjct: 1180 RG 1181


>gi|121998060|ref|YP_001002847.1| exodeoxyribonuclease V subunit beta [Halorhodospira halophila SL1]
 gi|121589465|gb|ABM62045.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Halorhodospira
            halophila SL1]
          Length = 1240

 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 89/944 (9%), Positives = 217/944 (22%), Gaps = 105/944 (11%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA-----DIIDIIETEEKK 165
            +L   +  W +     +       P    +   +A  LA          +   +    K 
Sbjct: 278  QLLERMAAWADDPAQPVPLTDKGKPDPGLLERMSATGLADPSRHKKGQSLPASLHRAFKA 337

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR----AEAEH 221
             +    L           AA ++    +    R  +L     +      +R    A    
Sbjct: 338  LDRHVELDAP-GVAILRAAARWITRRFQAEQRRRAQLGFQDLLTRLRDALRGPGGARLAQ 396

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPN---GAIVLPGLDCHIPTAIWNTITEKS 278
             ++      +I     + P    L  TV    +   G  +    D       +      S
Sbjct: 397  TIRSQFPVALIDEFQDTDPVQYELFETVYRIADNDPGLGLFLIGDPKQAIYGFRGADIHS 456

Query: 279  TNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                 + T    +      +  + L     +   R               S   LP    
Sbjct: 457  YLRARAATEGRHYTLPRNFRSSEALVGAVNQLFARAEGSWPAGAFAFRGGSGGGLPFHPV 516

Query: 338  DM------RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD-------- 383
            +             E+   N+      V++ +       A + A  +   L+        
Sbjct: 517  EAQGRGEFFEEAGAEHPALNLWCHDPGVSVAKNAYLPTYAEACAARIVALLNGGAARPAV 576

Query: 384  -------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
                           +  + L+      +   +    R   ++ +S    +  T  +  L
Sbjct: 577  TGFRHPGGHLEPVRPRDMAVLVRNHTEASAIQEALAAREVRSVYLSDRDSVLATAEADDL 636

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
               L A  +  D   +   +  P       E              +        +   + 
Sbjct: 637  VRWLRACAEPTDEGLVRAALATPTLGLALSELDRLVTDELAWERRIEQFGEYRRLWRSRG 696

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++        +        +    E                  L   +  +     +   
Sbjct: 697  VLAMLHRLLHDFGVPQRLLAISGGE------------RSLTNLLHLAELLQQWAREHDGE 744

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
                +  V   Q        ++  L  +E+   + ++       G       + ++    
Sbjct: 745  QALIRHLVELRQQARNGVEDQILRLESDEDLVKVVTIHK---SKGLQYPLVFLPFVCTFR 801

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
             +   +  +   ++   L     L+   +          +  ++     +      V  +
Sbjct: 802  PVTARDAPRRVPDQHGRLRWRFELDQEDVEAADSERLAEDLRLFYVALTRAQHACWVGMA 861

Query: 671  DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
             +     ++ + + +    +  G   +              A   +     L        
Sbjct: 862  PITQGNTKRSLLERSAAGYLLAGPDGVEPGGLGAVLEQAAAADPAITVSEPLLDEASRFV 921

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKP--FPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                     +  +                        + R+   S  + ++ +       
Sbjct: 922  GDPAAPPLGEPCQPRRRAADAWWIASYSALVRHDTAGRARSAPASAAEDVLREESGHALV 981

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS------- 841
            +    D            D GT  HN++     +            +   ++        
Sbjct: 982  QEAGGDAGSWHGFPRGP-DAGTFLHNLLEWAATQLGLATAGAQPEWLDAEVERRCRFRGW 1040

Query: 842  --------------HFEKENLPPHIDIIWRHLF---HKISHSFLEHEEKIQSSIEKIFVN 884
                             + +LP     +               +E +      ++ +   
Sbjct: 1041 DGQVATVQGWLRALLGAELSLPGAQTTLALGRLPTYQAELEFLIETQPLRADRLDDLVCQ 1100

Query: 885  I--PAKMAIESIGIH----LTGFADRIDLLKSGFVDITDYKTG--------DNPKKETA- 929
               P +             L GF D +   + G   + DYK+           P+   A 
Sbjct: 1101 HLLPGRARPPVAPARLNGMLKGFIDLVCCHE-GRYYVADYKSNWLGGGDGHYAPEYLEAE 1159

Query: 930  --QKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
              ++  D QL +   AL     +++      R V   FY+ L+ 
Sbjct: 1160 VLERRYDLQLVIYTLALHRLLRARMPDYDYDRHVGGGFYLFLRG 1203


>gi|294792591|ref|ZP_06757738.1| ATP-dependent nuclease subunit A [Veillonella sp. 6_1_27]
 gi|294456490|gb|EFG24853.1| ATP-dependent nuclease subunit A [Veillonella sp. 6_1_27]
          Length = 1251

 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 47/167 (28%), Gaps = 23/167 (13%)

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
            K   +            GTL H  +  L           +    +  +    +       
Sbjct: 1073 KPQALQSEDDVLTGAQWGTLMHEAMQWLP----------LVKYTQASLTKELDALVAKGT 1122

Query: 852  IDIIWRHLFHKI-SHSFLEHEE-KIQSSIEKIFVNIPAKMAIESIGIH----------LT 899
                 R+L      + F   +  K   + ++I   +P  M  E   ++          L 
Sbjct: 1123 FTEEERNLLSDTSLYKFFNFDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGENLFLQ 1182

Query: 900  GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            G  D     + G   + DYKT      E   K    Q+ L   AL+ 
Sbjct: 1183 GIIDTAFE-EDGEWVLVDYKTDRVTSGEELIKRYKIQMDLYKEALQR 1228


>gi|294794377|ref|ZP_06759513.1| ATP-dependent nuclease subunit A [Veillonella sp. 3_1_44]
 gi|294454707|gb|EFG23080.1| ATP-dependent nuclease subunit A [Veillonella sp. 3_1_44]
          Length = 1251

 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 48/165 (29%), Gaps = 19/165 (11%)

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
            K   +            GTL H  +  L   +  +        + + +D+   K      
Sbjct: 1073 KPQALQSEDDVLTGAQWGTLMHEAMQWLPLVKYTQ------ASLTKELDALVAKGTFTEE 1126

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH----------LTGF 901
               +       +   F     K   + ++I   +P  M  E   ++          L G 
Sbjct: 1127 ERNLLSD--TSLYKFFNSDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGENLFLQGI 1184

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             D     + G   + DYKT      E   K    Q+ L   AL+ 
Sbjct: 1185 IDTAFE-EDGEWVLVDYKTDRVTSGEELIKRYKIQMDLYKEALQR 1228


>gi|330503685|ref|YP_004380554.1| DNA helicase/exodeoxyribonuclease V subunit beta [Pseudomonas
            mendocina NK-01]
 gi|328917971|gb|AEB58802.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas
            mendocina NK-01]
          Length = 1209

 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 76/858 (8%), Positives = 179/858 (20%), Gaps = 93/858 (10%)

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANH--- 252
             E+     +    A ++      +            I     + P   R+  T+      
Sbjct: 350  AEMGFDDMLVRLDAALQGSNGPRLAEVIRRQFPVAMIDEFQDTDPLQYRIFDTLYEVEAN 409

Query: 253  PNGAIVLPGLDCHIPTAIWNTIT-----EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +   +    D       +                  +     + + S A +     +  
Sbjct: 410  RDDCGLFMIGDPKQAIYSFRGADIHTYLRARRATFGRHYNLEKNFRSSQAMVDAVNGVFL 469

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
               +R       +    +   +                +  +   Q    +     A  +
Sbjct: 470  RAEQRESGEGAFLLRDDLPFIEVGAQGRGEVWSVDGQAQPALTVWQLASDEPVAKGAYLD 529

Query: 368  REEAISIAIALR----------------MSLDENKKKSALITADRNLARRVKLELT-RFG 410
               A + +  +R                          A++  D N A+ ++ EL  R  
Sbjct: 530  AMAAGAASEIVRLLDLGQRGQAGFSKEGALGALRPSDIAVLVRDFNEAQAIRGELAARGV 589

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS---RA 467
             ++ +S    +     +  L   L A  + +    +   +          E         
Sbjct: 590  RSVYLSDKDSVFAAQEARDLLLWLRACAEPDQDRPLRAALASATLGLALAELEQLNLDER 649

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIA--TQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                 ++  R  +  +    +  ++   +                R+      LA LL  
Sbjct: 650  TWERRVMQFRDYRQRWQRQGVLPMLRQLLQDFELPQRLMGRDDGERVLTNLLHLAELLQQ 709

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
               +    L   +       G    +D   L +   + +              E      
Sbjct: 710  AAAELDGELALIRHLSELLAGEGQAADEQVLRLESDEALVRVVTIHKSK--GLEYPLVFL 767

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                              +       L   E    + E+      L  L   L       
Sbjct: 768  PFICAFRPVDDKKPLQIHDGERRQLVLKPDEDSLARAERERLGEDLRLLYVALTRARHAC 827

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
              G+ +             S +       +               A+       T     
Sbjct: 828  WLGVADLKIGNGKKSRLHESAIGYLLGGGEP------------LAASAALVDWLTPFAAG 875

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                                +       R             +          P      
Sbjct: 876  LESTVAPVPTASEQRYRVIDEERFEPHWRTPVRRAAEHWWIASYSALRLDEDAPSQISRH 935

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII--------- 816
            +        ++  I+D  +                + P   + GT  H ++         
Sbjct: 936  EDAAPDSPAMQNAIDD-ESPLLALAPLPASAQGLHRFPRGPNPGTFLHGLLEMAAQEGFA 994

Query: 817  ----------TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
                        L ++   +        ++  + +   +       D +      +    
Sbjct: 995  ILAQNPAKLREALARRCQRRGLEGWIDPLQDWLLALLTRPLPVDGADSLVLAQLTQYQPE 1054

Query: 867  FLEHEEKIQSSIEKI-----FVNIPAKMAIESIGIHL----TGFADRIDLLKSGFVDITD 917
                 E     +  +        +P           L     GF D +   + G   + D
Sbjct: 1055 LEFWFEARGVDVRLLDQWVQQCELPGIARQPLRADTLNGMFKGFIDLVFEHQ-GRYYVAD 1113

Query: 918  YKTGDNPKKETAQK-----------LIDPQLSLEAAALKAGSFSQID----CRKVANLFY 962
            YK+      ++A               D Q  L   AL      ++      + V    Y
Sbjct: 1114 YKSNWLGSDDSAYTCDAMETAIASHRYDLQYVLYVLALHRQLRLRLPDYDYDQHVGGALY 1173

Query: 963  IRLKQKFKIDCITNDKKK 980
            + L+   +   +    ++
Sbjct: 1174 LFLRAPQQGAYLARPPRE 1191


>gi|320458252|dbj|BAJ68873.1| hypothetical protein BLIJ_1287 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 549

 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 59/218 (27%), Gaps = 28/218 (12%)

Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                      +P   SFS + + ++ P    A    KL   P           G + H 
Sbjct: 6   PAAGVARASLPRPGRASFSMLDKWMSCPARWAAE---KLMPKPRLWG--SPLVLGGIVHA 60

Query: 815 IITELIKKRINKNTPEIN------------HLMKQIIDS----HFEKENLPPHIDIIWRH 858
            +                              M+   D          +  P +   W  
Sbjct: 61  ALELACATPDVVAPDWRALCAKGVGVEYGRWRMRGWGDEPIPSGVAMPDGSPAMQDDWVA 120

Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918
                   F+  +   +  +E   +    +  ++ I   L G  D       G   + D+
Sbjct: 121 AAALKLSGFVLTDALGRV-LEPAALEQDLEADVDGIP--LRGAVD--YRDVDGT--VVDW 173

Query: 919 KTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
           KTG  PK   A++    QL L    L A    ++   +
Sbjct: 174 KTGGTPKYRDARRRHADQLRLYRLMLDADGVCEVRAAR 211


>gi|308125359|ref|ZP_07663372.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308113235|gb|EFO50775.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 738

 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 47/495 (9%), Positives = 128/495 (25%), Gaps = 71/495 (14%)

Query: 2   HNKKPNVFTIAPSSPFFREMI---PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQ 58
           H  KP +    P +   + ++     LL+  +                + I   + +A  
Sbjct: 207 HRGKPYLLEAGPGTGKTQTLVKRVEGLLDEGVDPR------------RILILTFSNKAAG 254

Query: 59  ELRSEFIEIT--GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
           E+             S     I +      +                    RLLE    +
Sbjct: 255 EMAERLASKNKEAVASMW---IGTFHAFGLDLVRRFYSELG-----FEKEPRLLERTEAV 306

Query: 117 LIWRNKLPDIIKDLYPE--SPLSLPISPANAIWLA-KNLADIID--IIETEEKKWEDLHA 171
               ++ P +  + +     P     +  +AI  A   + D  D   +  E     D   
Sbjct: 307 EALEDEFPRLGLEHFRNLYDPTEHITNLLSAISRAKDEVVDHRDYFRLAQEMLDSAD--- 363

Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK---- 227
               +      L A  +    + +                +  ++    ++         
Sbjct: 364 ---TEESKTAALKAKEVATVYEAYERLKRAKGCIDFGDLVLLPVKFLENNVELFKHFQSL 420

Query: 228 -GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
              +++        ++ RL+  +     G  +    D       +   +  S +   +  
Sbjct: 421 YDHVLVDEYQDVNRSSIRLLMLLCG--EGENLWAVGDARQSIYRFRGASSVSMSRYCTQD 478

Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
            + T  Q  L       +       +     +   G   +I+         + +  +  +
Sbjct: 479 -FPTALQGRLKINYRSSEEIIRAYSKFAFDMSANIGSPELIADRGETGCLPEFKVVEKAD 537

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKL 404
                                 ++A+ +A  ++   +   + +  A++ +      ++  
Sbjct: 538 ----------------------DQAVVLAETIKDMQESGYSYRDQAVLCSGNERLSQLAE 575

Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
           +L   G+ +       L        + S L+ +        +  + + P  +    +  +
Sbjct: 576 QLELLGVPVLYLG--SLFEREEVKDMFSFLSLLTDSW-GSGLVRIGRWPEFELSLEDLDV 632

Query: 465 SRAKNALELVALRGN 479
                  E    +G 
Sbjct: 633 ILNHLRTERCEDKGW 647


>gi|299531352|ref|ZP_07044762.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni S44]
 gi|298720759|gb|EFI61706.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni S44]
          Length = 1270

 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 95/936 (10%), Positives = 207/936 (22%), Gaps = 126/936 (13%)

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
                + R LEL+       +              L LP   +    L K L ++      
Sbjct: 292  AQDPLNRSLELSDSARKRLSPEGMAEAFKGSTMDLLLPTEFSELEQLLKALTEL------ 345

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR----A 217
                   +         +       +LK  +  +         +       A +      
Sbjct: 346  -----PSIKVALRLHAAVHVQQRLLWLKRQAGTF-------GFADMQQRLDAALAGDNGP 393

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN---GAIVLPGLDCHIPTAIWNTI 274
              +  +       +I     + P   RL   +    +   G+ +L   D       +   
Sbjct: 394  ALQAGILAQYPVALIDEFQDTSPLQYRLFDQIYRTADNSAGSALLLIGDPKQSIYGFRGA 453

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
                          +    Y L       +   + V +    +    G    + ++    
Sbjct: 454  D---IYSYLQARQATEGRHYVLDTNFRSTEALVDAVNQWFVQAEVREGEGAFMFRAGQSN 510

Query: 335  DTSD-----------MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL- 382
                           +         +       SD  L   D  R  A   A  +   L 
Sbjct: 511  PLPFESVKANGRKELLMQGSQRMAALTIAWDGSSDEPLSNDDIRRRGAEFCASQIVQWLM 570

Query: 383  ---------------DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
                                 + L+   +  A   +    R   ++ +S    +  +  +
Sbjct: 571  DGATGFAEAGQPLQRLRPADIAVLVRTGKEAAAVRRALARRNVASVYLSDQDSVFASGEA 630

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
              L   L A+    D +A+   +  P+    F E     + +          K  + +  
Sbjct: 631  QDLLLWLRAVAAPLDGLAVRAGLATPMMGLSFDELAWLASDDEAFDARSELLKELHSLWQ 690

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDK-ELAVLLVDHILQCITPLVTYKTNKNSTCG 546
               ++     T         W   +  E +    + L + +      L   +        
Sbjct: 691  RLGVLAMLRQTLYRFELPARWLKDMGGERRLTNYLHLAELLQGASAQLEGEQALIRWLAT 750

Query: 547  NLSISDWTKLTVTCLQNVCLDEH-----------------RKLPNLWFEEEGKTLSSLFS 589
             +                  D                         +   +GK       
Sbjct: 751  QIESPGAAGDAQIVRLESDADLVKVVTVHKSKGLEYPLVCLPFGGSFRPVDGKAAYLSLP 810

Query: 590  KIIETGSCIKA-----NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
              I+     +      +A        RL +   +           +   L          
Sbjct: 811  VQIDGAPARELVLDYDDAQLAQADKERLREDLRLLYVALTRPRHALWMGLAPMKRGNSKN 870

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
             +       +      +   +    S   L      I       E+   +R++       
Sbjct: 871  CVNEQGAAGYLLAGDVSQAAASWRASIQALSERCTQIAVVDLPAELPVASRYVAAQALPA 930

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
                P   +++ +R  +   +     +       L    +     ++    +      L+
Sbjct: 931  LAAAPVYEAQFDRRWGIGSFSSLTRAMAAPSLPVLPVAAQSPAEDERALQAQEAGEAALD 990

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK-- 822
                    + +  L        A           F + P     G   H+ +  L  +  
Sbjct: 991  LGVINDVMTALPNLTR----FAAGARSDAAVWHRFMRGP---VVGNFLHDQLEWLAAEDF 1043

Query: 823  --RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE---EKIQSS 877
                  +      L  +++             D++       + H  L            
Sbjct: 1044 ALLPEDDPGNSEPLAARLLRRCERAGRKEQAADVLQW--LRAVVHQPLAPLGVSLAQLGE 1101

Query: 878  IEKIFVNIPAKMA-------------------------IESIGIH--LTGFADRIDLLKS 910
             + +   +   +                          +    +H  L GFAD +     
Sbjct: 1102 GDALLPEMEFWLPARRLSAPGIDALCRRHILAGQPRPVLPERELHGMLMGFADLVFHHG- 1160

Query: 911  GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            G   + DYKT              PQ +LE A L+ 
Sbjct: 1161 GRYWVLDYKTN---HLGQDGAAYAPQ-ALEQAMLEH 1192


>gi|83643128|ref|YP_431563.1| exodeoxyribonuclease V subunit beta [Hahella chejuensis KCTC 2396]
 gi|83631171|gb|ABC27138.1| exodeoxyribonuclease V, beta subunit [Hahella chejuensis KCTC 2396]
          Length = 1181

 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 91/886 (10%), Positives = 212/886 (23%), Gaps = 102/886 (11%)

Query: 183  LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE---HLMKGTKGPI-IIAGSTGS 238
                  K   +    +   L     +G     + A            + P+ +I     +
Sbjct: 321  ATLTAFKDVLQRLKTQAEILGFDDLIGSLKDALAAATGPQLRQALQRRYPVALIDEFQDT 380

Query: 239  IPATARLMSTVANHPNG-AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP----Q 293
             P+  R+ S++ +  +G A +    D       +      +       T           
Sbjct: 381  DPSQYRIFSSLYDAADGNATLFMIGDPKQAIYSFRGADIYAYLQAKQRTPQDNRYTMDTN 440

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            +   K L        +      +         V +          + +  +   +   + 
Sbjct: 441  WRSRKELVAAVNGLFEQCANPFLFAGDIEFIPVQAAGAADASVLTLDDVPVTPLQAWLLG 500

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLD--ENKK-----------KSALITADRNLAR 400
            +      + +     + A   A  +   L+  E  +             A++  D   AR
Sbjct: 501  REDGGKTISKDQARPQLAQITASEIANWLNLGECGRARLGERPLSAGDIAVLVRDNKQAR 560

Query: 401  RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
             +  +L+  G++        +  +  ++ L  LL A+ + ND   +   +      +   
Sbjct: 561  IMSEKLSAVGVSSVFLTRESVYQSEEATDLLRLLRALLEPNDERRLRAALVTLSWGWTAA 620

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
            E                          L SL   R   Q         +   +       
Sbjct: 621  ELETLARDEQRWENM------------LTSLHQLREEWQDAGFMPMFQKWLQNFSVAARL 668

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
            + L +   +    L   +  + +     +           L+            L  +E 
Sbjct: 669  LGLPEGERRLTNLLQLAELLQQAGRDYPTPERLLAWYQGQLEQADGRGDEHQLRLESDEA 728

Query: 581  GKTLSSLFSKIIETGSCIKANAIEW-----------------IDIITRLIDGETVKPKIE 623
               + ++ S        +    + +                   ++  L  G+ ++ + E
Sbjct: 729  LVKIVTIHSSKGLEYPLVFLPFLGFGRSGKDDYLMCHDPEREHRLVLDLSGGDRLREQAE 788

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL---SRVMQSDLNLKTAEKY 680
            +      L  L   L     L +         +  A    L   +    +D         
Sbjct: 789  RERLAEDLRLLYVALTRAKQLCVWAWGAVNEFQYAAMAWLLYGGATGSLTDWLTSLKNLD 848

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
              Q A             ++ +    +          +          +    R   Y  
Sbjct: 849  DTQLAEPLTRLAAQTDFYWSPAPEPVHQRHQPGEGAGQWRARSAQRTVEQNW-RLSSYSQ 907

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY-ARRILKLDFIPHF 799
                      +      +    ++ + +    S+I Q     +A      IL+       
Sbjct: 908  LAAGGGGRHSEEPLDEAEATLEVQPRLQP-DVSDIFQFPKGAWAGQCFHHILENMPFQAE 966

Query: 800  KKDPDRTDRGTLF--HNIITELIKKRINKNTPEINHLMKQ-----IIDSHFEKENLPPHI 852
              +            H    E +     +    +N  ++Q        S  +K N+   +
Sbjct: 967  SAEILHELTSHSLQQHGFGEEWVACVAEQLWQVVNTPLRQNGVTPFSLSQLDKANMQVEM 1026

Query: 853  D------IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
            +      +I +    +    +                  P  + + +    + GF D   
Sbjct: 1027 EFLFPVTLIQQARLARFLADY-------------SGSEAPVNLNVAANEGLMHGFIDLTF 1073

Query: 907  LLKSGFVDITDYKTGD---------NPK--KETAQKL-IDPQLSLEAAALKAGSFSQIDC 954
              + G   I DYK G           P   +        D Q  +   AL       +  
Sbjct: 1074 QHE-GRFYIADYK-GSWLGEKRESYAPDNLRNEILAHRYDLQYLIYTLALHRYLQRSLPA 1131

Query: 955  ----RKVANLFYIRLKQ-KFKIDCITNDKKKYSADELSEKSLKNLI 995
                     ++Y+ L+    +            + E      + L 
Sbjct: 1132 YDYETHFGGVYYLFLRGMHSQQQPELGVFFDRPSREAVAAFAEILQ 1177


>gi|255020482|ref|ZP_05292547.1| Exodeoxyribonuclease V gamma chain [Acidithiobacillus caldus ATCC
           51756]
 gi|254970092|gb|EET27589.1| Exodeoxyribonuclease V gamma chain [Acidithiobacillus caldus ATCC
           51756]
          Length = 1146

 Score = 55.3 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 79/804 (9%), Positives = 184/804 (22%), Gaps = 69/804 (8%)

Query: 158 IIETEEKKWEDLHALKN---EKYGMWWLLAADFLKIASKYWTERLVEL--------NASS 206
             +     W    A                    +  ++ W     E+            
Sbjct: 149 QYQVYRADWLKDWAAGRWTLRDGRGVLRDLPQDQRWQAQLWHWLCREVTEGGSHFAGRGE 208

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                +  +R  A   +      +I  G+      +   ++ +  H    + +P    + 
Sbjct: 209 IHEAFLQRLREAAPGSLDLPPR-LIFFGAVSLPAQSLEALAALGRHLQVLMAIPNPSAYH 267

Query: 267 PTAIWNT------------ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
            + +               +                       +LLD  D   E     G
Sbjct: 268 WSDVAGADEDLRRQRRRRVLGTSEAGFGPRLLAAWGRQGRDFMRLLDRFDESVEMGPLWG 327

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                +   +     + L    + +R+          + +    + L  +     E   +
Sbjct: 328 --LQRVDFFTEDTGTTLLRQLQTRIRDLVDSREPGRTLAENDDSLVLHSSYGPLRELQVL 385

Query: 375 AI----ALRMSLDENKKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLST 423
                  L        +   ++  D      +   +           I   I    P   
Sbjct: 386 QDELLLRLGRGRGLRPRDIVVMVPDIASYAPLVQAVFGVYGKNDPRYIPFHIVDLTPQER 445

Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKN 481
           +     L  LL           I  L+       +FG   + L +    LE    R   +
Sbjct: 446 SNLIRALVWLLGLPQGRVTQSEIRDLLDCSALQRRFGLAPEDLPQIHAWLEQGGWRWGLS 505

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED----KELAVLLVDHILQCITPLVTY 537
           +    DL         +                +      E    +       +  L   
Sbjct: 506 AAHRADLGFAACGAPTSGAFALQSLLLGYTNGSDSHFDGIEACAEVGSLDAALLGKLWVL 565

Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLD---EHRKLPNLWFEEEGKTLSSLFSKIIET 594
                S    L  +   +  V   + +  D             E+    L     +  + 
Sbjct: 566 WERLESWRQRLKEATTPEHWVERARQLLADFFVASDTADREALEQLESALEDWLLQTEKA 625

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
                     + +     ++             +     +  R + F  + L G+N+  +
Sbjct: 626 AWDGPLPLEIFREAWLDGLESA--GDGAFLGGGVTFCTLMPMRSIPFRMVCLLGMNDEDY 683

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTI 711
           P+   +  F    +          +         E     R  L  + + R+  N     
Sbjct: 684 PRPDPRRDFDLMTLPDMARPGDRSRREDDRYLMLEALLSARDGLYLSWTGRDPRNQENRA 743

Query: 712 ASRWLQRLL----------VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK----RP 757
            S  + +L            L      D L+     YL+      +  +         R 
Sbjct: 744 PSALILQLQREIVGIWGEDALRTRLHLDPLQPFSPRYLEPDGPESFAREWFPVSTVEDRS 803

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
                  A     +  ++K  ++D  A +    L ++    ++      D       +  
Sbjct: 804 VAVLSPPAARLELALLDLKGALSDALASFYALRLGVE--SPWRDRMAADDEAFRLDGLGQ 861

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
             I +++ +       L + +               I+ +     +  S L   + +  +
Sbjct: 862 WQILQQLWERAASPAELREGLAAEARRGHLPLAAAGILQQQRLLTLMESLLGSWQAVAEA 921

Query: 878 IEKIFVNIPAKMAIESIGIHLTGF 901
           +      +  +      G  L   
Sbjct: 922 LGPEH-EV-LEDEFLGDGFRLQAR 943


>gi|110668089|ref|YP_657900.1| hypothetical protein HQ2148A [Haloquadratum walsbyi DSM 16790]
 gi|109625836|emb|CAJ52274.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790]
          Length = 862

 Score = 55.3 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 78/733 (10%), Positives = 175/733 (23%), Gaps = 115/733 (15%)

Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
           +        ++   D  + +A+   + +      +            LA         R 
Sbjct: 12  LYEECKDFDLVLVPDAPMASALNRRLDQPHFGPFAITP-------RRLAARRREQAEDRL 64

Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
               +   ++  +       ++                       + F+  A   A +  
Sbjct: 65  AFLEIIQTTDLNW------KETSYAVGNILQCWEYQGAADAVLNYEQFATTATHTAVDCI 118

Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            E  + +  L     E+    A++   +      +  L      I++    P        
Sbjct: 119 TEMDTTSKRLTEYCIESDTSVAVVGFKQ-FTELERSILPPDYDIINLFTREPF-DHPPFR 176

Query: 429 ILTS--------LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
           +L S        L     +  D +A+        +         +        +   G  
Sbjct: 177 VLDSPTAIVDAVLDTVTAENADDVAVVLDAASQYSSLIESALEAAD-------IPYYGGP 229

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
              D    ++ +    +                          V+ +   +T L      
Sbjct: 230 GFTDNTRHRAFLQLLRSAHAGRDTQ------------------VNDVRPLLTQLGMSIDI 271

Query: 541 KNSTCGNLSI-SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
           ++       +        +     V      +  N +      T+ +  +++   G    
Sbjct: 272 EHDEKRLYDLDRQGVDWLLEFRDEVRSSTFEEAINAYEAVTDSTIDAFRNELETLGILDD 331

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
           A     ID +   +    V P   ++  + +     +  ++   +    ++EG    +  
Sbjct: 332 AITKPAIDRLEFYLQSYEV-PIDRENDGVLLADAKSAAHVDRAVVFYLAIDEGWTHSSPR 390

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
           +                 E+ I Q     +         Y         P     + + L
Sbjct: 391 RPWVDEDQE--------FERNIRQFQRLLQNGV---DQYYLVQDTSGGTPVTPCLYFEEL 439

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                  F D         LD  +      +       +P      +    S S +   +
Sbjct: 440 FDKDFDKFSD---------LDSLQHSRSFRETQSGFEKEPLDVSPEEVSALSQSSLNTYV 490

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
           N P   +  RIL      HF++       G LFH+     +       T  ++ +   I+
Sbjct: 491 NSPRDYFFSRILDNPDKKHFRE-------GNLFHDFAEFYVSHPDVITTDTLDEVATTIL 543

Query: 840 DSH--FEKENLPPHIDIIWRHLFHKISHS----------FLEHEEKIQSSI------EKI 881
           +    F +          +R     I             F+  +     +         I
Sbjct: 544 NEVDPFLRGVDTEVCHTTYRVGLQTIVEFLDGNPPQGDGFVTSDSGRGENFFAEYYNRPI 603

Query: 882 ---FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP--- 935
                         +  + L G  D +         + DYK+G      +  K       
Sbjct: 604 DASHTERWF----ANTNLGLKGKIDLV----HNPTRLLDYKSGSKKSAYSIVKHSALDPP 655

Query: 936 ------QLSLEAA 942
                 Q  L  A
Sbjct: 656 SDKPNFQALLYLA 668


>gi|116250378|ref|YP_766216.1| uvrD ATP-dependent helicase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255026|emb|CAK06100.1| putative uvrD ATP-dependent helicase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 685

 Score = 55.3 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 59/543 (10%), Positives = 134/543 (24%), Gaps = 61/543 (11%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAI--------QELRSEFIEITGKKSTILPIIKS 80
           TL     +  +       + +   ++RA         +  R       G  +  L    +
Sbjct: 42  TLAHRVAHLIVKGADPRRILLMTFSRRAAAEMARRVERICRDVLGSNAGVMADALSWSGT 101

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
              +       D      L+P  +   R    A L+ + R+ L     +    +  +   
Sbjct: 102 FHGIGARLLR-DYAEQIGLDPGFTIHDREDS-ADLMNLIRHDLGFSKTESRFPTKGTCLA 159

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                             I +     E    L       W       L+     + E   
Sbjct: 160 ------------------IYSRAVNSETALDLVLRDVFPWCATWEKQLRELFACYVEAKQ 201

Query: 201 ELNASSPVGYQIALM----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             N        +        A     +      +++     +    A ++  +     G 
Sbjct: 202 SQNVLDYDDLLLYWAQMVGEAMIAEDIGSRFDHVLVDEYQDTNRLQASILLALKPQGQGL 261

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V+   D       +   T ++     +  +    P  ++  L               + 
Sbjct: 262 TVV--GDDAQSIYSFRAATVRNILDFPAAFS----PAANIVTLDRNYR----------ST 305

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
              +   + VI  +      +        +              L+   +E E+A  +A 
Sbjct: 306 QPILAAANAVIDLASERFTKNLWTERQSADRP-----------RLVTVRDEAEQARYVAD 354

Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +  + +E    K+ A++    + +  +++ELTR  I      G+    + H   + + L
Sbjct: 355 MVLDNREEGLTLKQQAVLFRASHHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAAL 414

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                  D +A   L++          +                          +   + 
Sbjct: 415 RFAQNPRDRVAGFRLMQILPGVGPSTAQKTLDLMAEDASPISALAAMPAPPRSGEDWTMF 474

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               Q+  T    W + +    +  A  L        T        +    G  S   + 
Sbjct: 475 VSMLQELKTGKAGWPAEIGLARQWYAPHLERLHEDAATRQADLLQLEQIASGYASRERFL 534

Query: 555 KLT 557
              
Sbjct: 535 TEL 537


>gi|323435179|gb|ADX66461.1| ScnS2 [Streptomyces chattanoogensis]
          Length = 9498

 Score = 55.3 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 84/756 (11%), Positives = 171/756 (22%), Gaps = 36/756 (4%)

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
                   D    S          A+  A  L    D              L+     +  
Sbjct: 2544 LTGRPATDDELRSADYWVAHARGAVRFADTLHAAHDRGAG--------TFLELGPDSVLS 2595

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI-P 240
              A D L   +      ++            AL R             +   G+     P
Sbjct: 2596 AAAQDALGDEADAHIVPMLRAGRGEERCAATALARLHVRGTAVDWPAYLAGTGARTLDLP 2655

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
              A            A +  G        +W  +        ++          SL  LL
Sbjct: 2656 TYAFQHERYWPEQTPARLAQGAADPADAELWGAVERGDATELAALLGLRDEQHASLYALL 2715

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
              L   R+       + +  Y  +     +   P                +       + 
Sbjct: 2716 PALSSWRQHRHEKALLDSTRYRVAWRPVPATAAPVLDGTWL-----LVTADGIDSDEILD 2770

Query: 361  LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV----KLELTRFGINIDIS 416
             +     + E + +  A R       + +A+   DR L   +      +          S
Sbjct: 2771 ALRGHGAQFETLVLDDACRDRAHLADRLAAVRDQDRPLTGVLSLLPLADRPGAEAGAQPS 2830

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
            AG+ LS  L  ++  + L A        A+ T    PLA       +      ALE   L
Sbjct: 2831 AGLALSLVLIQALADTDLAAPLWTLTRGAVTTGADDPLAHPLQTAAWGLGRVAALEHPQL 2890

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
             G                 ++             R +       V      L        
Sbjct: 2891 WGGLIDLPTALDAPATQHLVSALAAQGGEDQIAVRATGALGRRLVRHPQAELPPADAFTA 2950

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
              T   +       ++  +          L   R+ P+     E           +   +
Sbjct: 2951 RGTVLVTGGTGALGAEAARWLARSGAEHLLLTSRRGPDAPGAAELAAEIEELGARVTLAA 3010

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
            C  A+      ++  + D   +   +  +         ++ L +    +   L       
Sbjct: 3011 CDTADRDALAALLDSVPDEHPLTGVVHAAGVGQAAALADTPLADAAQAMAAKLLGAAHLD 3070

Query: 657  NTAKNPFLSRVMQSD--LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
            +      L   +       +  +      +A +  +     H    R+ R     ++A  
Sbjct: 3071 SLLDGHDLDFFVLVSSIAGVWGSAGQSAYSAANAYLDALAEH----RAARGLPATSVAWG 3126

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRK---LDYTTKQPHYKRPKPFPPLEAQPRTYS 771
                  +       D L +RG  +L        L                  E     ++
Sbjct: 3127 PWAEAGMATHEAVTDELHRRGLRFLAPATALTELRRAVVHQDVTVTVADIDWERYHPVFT 3186

Query: 772  FSE----IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             +       +L        A             +  D+ ++  L  +++       +  +
Sbjct: 3187 STRPSALFDELAEVQALARAEGESAAPEFAARLRGLDQDEQERLLGDLVRAEAAIALGHD 3246

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
            + +            F          +  R     +
Sbjct: 3247 SADAIAE-----RRAFRDAGFDSLTAVELRKRLAAL 3277


>gi|169627503|ref|YP_001701152.1| exodeoxyribonuclease V, beta subunit (RecB) [Mycobacterium abscessus
            ATCC 19977]
 gi|169239470|emb|CAM60498.1| Exodeoxyribonuclease V, beta subunit (RecB) [Mycobacterium abscessus]
          Length = 1081

 Score = 55.3 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 89/954 (9%), Positives = 217/954 (22%), Gaps = 152/954 (15%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174
            L  +    + D     + +   + P+S   A+ LA+ +                L  L+ 
Sbjct: 145  LDELVCEIVNDRYLTHFGKDRDAPPLSYPAALRLAREVVRN---------PATQLRPLQP 195

Query: 175  EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE------AEHLMKGTKG 228
            E    +   A  F +   +    R               L  A       A   M     
Sbjct: 196  EADS-YAFAALGFARDVLEQLEIRKRRRGILGFDDLLTRLADALNATDSPARVRMHQRWP 254

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT---EKSTNITSSN 285
             +++     + P   +++    +  +  +++   D       +             T+ +
Sbjct: 255  IVMVDEFQDTDPVQWQVLERAFSGHSTLVLI--GDPKQAIYAFRGGDIETYLRAAATAGD 312

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                     S A L+D L +     +  G        ++            +D     ++
Sbjct: 313  KQTLGTNWRSDAALVDRLQVVLRGAQLGGPDIVVHDVQAHHQGHRLAGAPHNDPFRLRVV 372

Query: 346  ENKIPNIQKCFSDVALIEADNER-----EEAISIAIALRMSLDENKKK-----SALITAD 395
                    +    + +I   + R     + A  I   L      + +       A+I   
Sbjct: 373  -------SRNRDGIKVIPIADLRRSIGRDLAADIGALLSSGATFDGRPVRARDIAVIVEA 425

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
               AR     LT  GI    +    + ++  +     LL A  + +    +         
Sbjct: 426  HKDARACHTALTEAGIPAVYTGDTDVFSSDAAQDWLYLLEAFDQPHRPGLVRAAAATVFF 485

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                    +                      ++   +    A  +       +++     
Sbjct: 486  GETAETLAV---------------GGESLTDEIAGTLRTWAARARERGVAAVFEAAQLAG 530

Query: 516  DKELAVLLV--DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
              +  +     + ++  +  L           G    +         L+  C +   +  
Sbjct: 531  MGKRVLSWRGGERMMTDLAHLTELLQETAHRNGFGPAA-----LRDWLRTQCSEGGAEAE 585

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                 +       + +  +  G       + +            +  +      L  L  
Sbjct: 586  RNRRLDSDAAAVQIMTVWVSKGLQFPVVYLPFSFNRYVPEREYVLYHE----DGLRCLHI 641

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIG-QAAHDFEM 690
                  ++    L G  E     +      L+R           + ++  G  +      
Sbjct: 642  GGREDPDYSMADLAGRTEAARDASRLAYVALTRAQSQVVAWWAPSFDEPNGGLSRLLRGR 701

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            A G   +    S  + +   +  R   R     G    ++    G      +   D    
Sbjct: 702  APGNPSVPDKCSPAKISDADVLKRL--RAWEAQGGPVVEDALVTGFVPAATSSPSDNLAV 759

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI----------LKLDFIPHFK 800
            +   +         +       +E   + ++P                     D      
Sbjct: 760  RVFDRPIDTAWRRTSYSGLLRAAEESGVSSEPEIAELDDEVDEIPLRSMPAGADVPSPMA 819

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII---DSHFEKENLPPHIDIIWR 857
            + P     G+L H ++        +   P++   ++  I      +  E     +     
Sbjct: 820  QLPAGAAFGSLVHAVLET-----TDPLAPDLVAELQTQIIRHRERWPVEIPAAELAAALE 874

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH-------------------- 897
             +        L      Q  +      +  +  +                          
Sbjct: 875  PMHDTPLGPLLPGVTLRQIGLRDRLCELDFEFPLAGGDAAADSFARLADVGMLLREHLAA 934

Query: 898  ------------------------LTGFADRIDLLKSGFVDITDYKTG------DNPKKE 927
                                    L+G  D +  + S    + DYKT             
Sbjct: 935  DDPLGVYASRLTGPGLGGQSLRGYLSGSVDAVLRVGS-RYVVVDYKTNWLGTGDAPLTAA 993

Query: 928  TAQKL----------IDPQLSLEAAALKAGSFSQIDCRKV----ANLFYIRLKQ 967
               +              Q  L +  L      ++   +         Y+ ++ 
Sbjct: 994  DYSRPRMVEAMLHSDYPLQALLYSVVLHRFLSWRLPGYRPEEHLGGAVYLFVRG 1047


>gi|296453650|ref|YP_003660793.1| large hypothetical protein [Bifidobacterium longum subsp. longum
            JDM301]
 gi|296183081|gb|ADG99962.1| large hypothetical protein [Bifidobacterium longum subsp. longum
            JDM301]
          Length = 1421

 Score = 55.3 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 892  ESIGIHLTGFADRID--LLKSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            E + + L+G  DR++  +L  G   + + DYKTG  P  +      D QL      L   
Sbjct: 1210 EHLTVRLSGRIDRMETRVLADGGECIRLIDYKTGRTPTVKQIFN--DLQLVCYQLGL--- 1264

Query: 948  SFSQIDCRKVANLF 961
             F +   R    L 
Sbjct: 1265 VFPEDGPRGAKALA 1278


>gi|255326998|ref|ZP_05368074.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296215|gb|EET75556.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
          Length = 644

 Score = 55.3 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 52/601 (8%), Positives = 140/601 (23%), Gaps = 68/601 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA +E+R+   ++           ++                        
Sbjct: 66  PRVLALTFTLRAAEEMRTRLHQLGAYGV----QARTFHSAA------------------- 102

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI-----WLAKNLADIIDII 159
                  L +L   W   +      +       +  +           L ++LA +I+  
Sbjct: 103 -------LRQLAYFWPQVVGGTFPSIVQNKAALITEAANRLRISTDRSLLRDLASLIEWA 155

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
           + +    + +    +EK     +   + ++   + + +   E N        +  +    
Sbjct: 156 KVQLLTPDTIMQRLSEKQLPSAVTPQN-MQRIFQAYEDLKDERNLIDFEDVLLLTIAMLE 214

Query: 220 E-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           E       ++      ++       P   RL+       +   V+   D       +   
Sbjct: 215 EDEKLAATVRNQYRHFVVDEYQDVSPLQQRLLDVWLGGRDDICVV--GDASQTIYSFTGA 272

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
           T                    L                    S+           +   P
Sbjct: 273 T-----------------SRYLLDFARRYRGAHTVKLTRDYRSHSQVVELANRLLAARRP 315

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---SAL 391
                 ++     ++ + +    DV      ++ +EA  IA  +R  ++++       A+
Sbjct: 316 HPDSSPHSWAPPLELMSQRGPGVDVEWFGYADDEQEAAGIAEDIRDLIEKDGVPPSEIAV 375

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS-SILTSLLNAIFKLNDFMAIATLV 450
           +      +  ++  L    I   +               + +L  +    +    +    
Sbjct: 376 LFRTNAQSAAIESALAAAHIPYQLRGAERFFERPEVKQAMLALRGSAKSTDGTEDVTRYT 435

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALR----GNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
           +  L   G+ E+         +            +       + L   R   +       
Sbjct: 436 RDVLGGLGYKEEGPLSGGATRQKWESLAALVHMVDMMAQHRQEQLQEHRANPRPGVPEPL 495

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                             D        L +    K      + +    +  +        
Sbjct: 496 PLTMHEVVATLNHRSEFNDAPQVNGVTLASLHAAKGLEWDAVFLCGLNEGLMPITFATTP 555

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
           DE  +   L +    +    L+     T +       +    +  +   +  +      S
Sbjct: 556 DEVDEERRLLYVGITRARKYLWLTWTMTRTVGGRGQRKRSRFLDDIDPAKRRRRAESAGS 615

Query: 627 T 627
           +
Sbjct: 616 S 616


>gi|86742471|ref|YP_482871.1| UvrD/REP helicase [Frankia sp. CcI3]
 gi|86569333|gb|ABD13142.1| ATP-dependent DNA helicase, Rep family [Frankia sp. CcI3]
          Length = 736

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 125/527 (23%), Gaps = 51/527 (9%)

Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANA--IWLAKNLADIIDIIE---TEEKKW 166
           L +L+  W +     +  +       +  + A          L D+   +E   T     
Sbjct: 107 LKQLLYFWPSVAGVALPKVEKSKIPYVVRAAARLHLRPDRAELRDLTSEVEWAKTTLVTP 166

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH----- 221
            D   +             + +      + E   +          +       EH     
Sbjct: 167 ADYARMAAASGRET-AAPPETVARLYAAYEEVKRDAGVIDMEDLLLLTAAMIEEHSWVAA 225

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
            ++      ++           R++       +   V+   D H     +   + +    
Sbjct: 226 EVRARYRHFVVDEYQDVNDLQQRVLDAWLGERDSLCVV--GDPHQTIYSFTGASPEHLLG 283

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                     P  ++ +L+                         V+  +      +    
Sbjct: 284 FPRRF-----PDAAVVRLIRDYRSTP-----------------QVVGLANTLMRAAPAAR 321

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLA 399
                   P           +E D+E  EA ++A  +R  LD+     + A++      +
Sbjct: 322 LVAARPDGPAPV-------WLECDSEPAEAAAVASRIRRLLDQGVPASEIAVLYRTNAQS 374

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
              +  +   GI   +  G              LL A  +  D          P      
Sbjct: 375 EAYEAAIGGAGIAYLLRGGEKFFERTEVVAAMRLLRAAVRSADTDR-------PEGLTAA 427

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
               L+      +   +          +L +L          +             D+  
Sbjct: 428 VADILAALGWRADQPTVGSGAEREQWENLAALHRLAGDLAARSPEADLEAFVAELGDRAT 487

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
                      ++ L T K  +      + +++ T   V       + E R+L  +    
Sbjct: 488 HEHQPTVQGVTLSTLHTAKGLEWDAVFLVGLTEGTLPLVHARTAEQIAEERRLLYVGVTR 547

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
             + L   ++     G         ++D +  +        +     
Sbjct: 548 ARRHLVLSWALSRAEGGRRSRRPSRFLDDLRPMRRESAAGVRHGGRG 594


>gi|264676501|ref|YP_003276407.1| exodeoxyribonuclease V subunit beta [Comamonas testosteroni CNB-2]
 gi|262207013|gb|ACY31111.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni CNB-2]
          Length = 1269

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 90/926 (9%), Positives = 204/926 (22%), Gaps = 110/926 (11%)

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID---IIETEEKKWEDLHAL 172
               W   L +     +     ++       +    + A   D    +     + E L   
Sbjct: 281  YKNWLKALREWAAAPHDGLAAAMKTGATRLVPAGLDEARKGDAPVELHPASAELEQLLQA 340

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-------EHLMKG 225
              +   +   L         +       +         Q  L  A A       +  +  
Sbjct: 341  LAQMPSLHVALRLHAAVHVQQRLLWLKRQAGTFGFADMQQRLDAALAGDNGPALQAGILA 400

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPN---GAIVLPGLDCHIPTAIWNTITEKSTNIT 282
                 +I     + P   RL   +    +   G+ +L   D       +           
Sbjct: 401  QYPVALIDEFQDTSPLQYRLFDQIYRTADNSAGSALLLIGDPKQSIYGFRGGD---IYSY 457

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD---- 338
                  +    Y L       ++  + V +    +    G    + ++            
Sbjct: 458  LQARQATEGRHYVLDTNFRSTEVLVDAVNQWFVQAEVREGEGAFMFRAGQSNPLPFESVK 517

Query: 339  -------MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--------- 382
                   +         +       SD  L   D  R  A   A  +   L         
Sbjct: 518  ANGRKELLMQGSQRMAALTIAWDGSSDEPLSNDDIRRRGAEFCASQIVQWLMDGATGFAE 577

Query: 383  -------DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                         + L+   +  A   +    R   ++ +S    +  ++ +  L   L 
Sbjct: 578  AGQPLQRLRPADIAVLVRTGKEAAAVRRALARRNVASVYLSDQDSVFASVEAQDLLLWLR 637

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            A+    D +A+   +  P+    F E     + +          K  + +     ++   
Sbjct: 638  AVAAPLDGLAVRAGLATPMMGLSFDELAWLASDDEAFDARSELLKELHSLWLRLGVLAML 697

Query: 496  IATQKNNTHVPHWQSRLSEEDK-ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
              T         W   +  E +    + L + +      L   +         +      
Sbjct: 698  RQTLYRFELPARWLKDMGGERRLTNYLHLAELLQGASAQLEGEQALIRWLATQIESPGAA 757

Query: 555  KLTVTCLQNVCLDE---------------------HRKLPNLWFEEEGKTLSSLFSKIIE 593
                        D                            +  +    +L      +  
Sbjct: 758  GDAQIVRLESDADLVKVVTVHKSKGLEYPLVCLPFGGSFRPVDGKAAYLSLPVQIDGVPA 817

Query: 594  TGSCIKANAIEWIDI-ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
                +  +  +       RL +   +           +   L           +      
Sbjct: 818  RELVLDYDDAQLAQADKERLREDLRLLYVALTRPRHALWMGLAPMKRGNSKNCVNEQGAA 877

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
             +      +   +    S   L      I       E+   +R++           P   
Sbjct: 878  GYLLAGDVSQAAASWRASIQALSERCMEIAVVDLPAELPVASRYVAAQALPALAAAPVYE 937

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
            +++ +R  +   +     +       L    +     ++    +      L+        
Sbjct: 938  AQFDRRWGIGSFSSLTRAMAAPSLPVLPVAAQSPAEDERALQAQEAGEAALDLGVINDVM 997

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK----RINKNT 828
            + +  L        A           F + P     G   H+ +  L  +        + 
Sbjct: 998  TALPNLTR----FAAGARSDAAVWHRFMRGP---VVGNFLHDQLEWLAAEDFALLPEDDP 1050

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLF-------------------HKISHSFLE 869
                 L  +++             D++                          +      
Sbjct: 1051 GNSEPLAARLLRRCERAGRKEQAADVLQWLRAVVHQPLAPLGVSLAQLGEGDALLPEMEF 1110

Query: 870  HEEKIQSSIEKIFVNIPAKM-------AIESIGIH--LTGFADRIDLLKSGFVDITDYKT 920
                 + S  +I       +        +    +H  L GFAD +     G   + DYKT
Sbjct: 1111 WLPARRLSAPRIDALCRRHILAGQPRPVLPERELHGMLMGFADLVFHHG-GRYWVLDYKT 1169

Query: 921  GDNPKKETAQKLIDPQLSLEAAALKA 946
                          PQ +LE A L+ 
Sbjct: 1170 N---HLGQDGAAYAPQ-ALEQAMLEH 1191


>gi|331694931|ref|YP_004331170.1| RecB family exonuclease [Pseudonocardia dioxanivorans CB1190]
 gi|326949620|gb|AEA23317.1| RecB family exonuclease [Pseudonocardia dioxanivorans CB1190]
          Length = 296

 Score = 54.9 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 49/169 (28%), Gaps = 12/169 (7%)

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
              + + +      P       +      P           G + H  +  L        
Sbjct: 20  PRVTPARLATWETCPRRFRMGYL--DRPPPARGGAWAHHTLGAVVHLALRALFALPARAR 77

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK--ISHSFLEHEEKIQSSIEKIFVNI 885
           TP        ++D ++  E               +  ++   ++HE    +S +   V  
Sbjct: 78  TPAAAA---DLLDRNWSSEGFRDAAQAGRYRRAARGWLASYVVDHELGDTAS-DPAGVER 133

Query: 886 PAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQK 931
                +      + + G  DRID    G   + DYKTG   P  + A+ 
Sbjct: 134 WVSETVGGGASRLVVEGRVDRIDTRA-GEAVVVDYKTGRHVPTDDDART 181


>gi|317493212|ref|ZP_07951635.1| exodeoxyribonuclease V [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918872|gb|EFV40208.1| exodeoxyribonuclease V [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 1191

 Score = 54.9 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 90/869 (10%), Positives = 222/869 (25%), Gaps = 85/869 (9%)

Query: 200  VELNASSPVGYQIALMRA----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             +L     +      +           ++      +I     + P    +   +   P  
Sbjct: 345  AQLGFDDLLSRLSQALNQSGGDVLAQAIRQRYPVAMIDEFQDTDPQQYGIFQAIYLQPQS 404

Query: 256  -----AIVLPGLDCHIPTAIWNTITEK--------------STNITSSNTTYSTHPQYSL 296
                 + +L   D       +                          S+    +      
Sbjct: 405  DKQSDSALLLIGDPKQAIYAFRGADIFTYMYARSEVKHHYTLGTNWRSSPGMVSAVNQVF 464

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
            + +             +         R  +                     +        
Sbjct: 465  SAVESPFLFADIPFLPVSAAKKNQALRFEIAGDIQKAMHIWLQPGEGCGTVEYQQSLAAQ 524

Query: 357  SDVALIEADNEREEAISI-------AIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
                + +     ++  ++       ++   ++         ++   R  A  V+  L+  
Sbjct: 525  CAAQIRDWLTAGQQGKALLYTDKKDSLGREIAKPVEASDITILVRSRAEAALVRDALSAL 584

Query: 410  GIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------FGFPEK 462
             I  + +S    +  T  +  L  LL A+        + + +   L            + 
Sbjct: 585  AIPSVYLSNRDNVFQTPEARDLLWLLQAVLAPEQERLLRSALATSLMGLNSQQLNELNQD 644

Query: 463  YLSRAKNALELVALRGNKNSYD-------IMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                     E  A R              IM  + L  + +A++     +         E
Sbjct: 645  ERLWDALVDEFDAYRQQWQKQGVLPMLREIMGRRHLAENLLASEGGERRLTDVL--HIGE 702

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
              + A L +D     +  L     +      N  +   +   +  +  +   +  + P +
Sbjct: 703  LLQEASLTLDSEPALLRWLAQQIDSPEVQSENQQLRLESDRHLVQVVTIHKSKGLEFPIV 762

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
            W    G           +  S      + + D   +L + E +  +  +   + +  ++ 
Sbjct: 763  WLPFIGSYRLQKQPLYHDRDSFNAVLDLNYSDDAVKLAEEERLA-EDLRLLYVALTRSVY 821

Query: 636  SRLLNFDTLILGGLNEG--VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
               L    L LGG  +       N+A    L +    D  +  A     Q          
Sbjct: 822  HCSLGLAPLFLGGRKKQGETDVHNSAIGHLLQKGEPGDAAMLLACLERLQNDDILVTTVE 881

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC-YLDWTRKLDYTTKQP 752
             +      +  +      A  + +++        +  L++ G   +LD   KLD      
Sbjct: 882  AQDGSPWVATAQEAQELQAKLFTRKMQDDWRVTSYSGLQQHGSSQFLDLLPKLDVDAVGE 941

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                  P       P+  +       + +P      R +        ++  + T+   + 
Sbjct: 942  SEVESIPALTPHTFPKGAAPGTFLHSLLEPMDFTQPRDITGLTEQVTQQGLN-TEWVPVL 1000

Query: 813  HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872
             + +  +++  + ++ P +  L    + +  +          I + +      + ++  +
Sbjct: 1001 DSWLDAILRAPLAESGPCLAQLAPSQVQAELQFYLP------IEQLVRSAELDALIKRYD 1054

Query: 873  KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK-----------TG 921
             + +    +       M        L GF D +   + G   + DYK           T 
Sbjct: 1055 PLSAQCAPLDFRQVRGM--------LKGFIDLVFFWQ-GRFYVLDYKSNWLGEDASAYTQ 1105

Query: 922  DNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITND 977
            +      A+   D Q  L + AL      ++      +    +FY  L+           
Sbjct: 1106 EAMVAAMAEHRYDFQYQLYSLALHRYLRHRLPNYQYEQHFGGVFYCFLRGMTPAQPGQGI 1165

Query: 978  KKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
                    L E     +  +   +  GE 
Sbjct: 1166 FHCRPDAALIE----GMDRLFGYIPEGEA 1190


>gi|146337792|ref|YP_001202840.1| putative ATP-dependent DNA helicase [Bradyrhizobium sp. ORS278]
 gi|146190598|emb|CAL74600.1| Putative ATP-dependent DNA helicase [Bradyrhizobium sp. ORS278]
          Length = 686

 Score = 54.9 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 58/535 (10%), Positives = 130/535 (24%), Gaps = 47/535 (8%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL     +  +N      + +   ++RA  E+      I  K         + G      
Sbjct: 46  TLAHRVAHLLVNGADPRRILLMTFSRRAASEMSRRVERIARKVLGGQAEAITAGLTWAGT 105

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
           F                +  +  +        ++               L  +       
Sbjct: 106 FHGLGARMLREYAERIGLDPVFTI-------HDREDSADLMNLVRHERGLSNTQRRFPTK 158

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
              LA     I +     +        ++  W    A  LK     + E           
Sbjct: 159 GTCLA-----IYSRCVNADMPLDEALVRHFPWCAEWAGELKGLFAAYVEAKQANAVLDYD 213

Query: 209 GYQIALMRAEAE----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
              +   +  A+      +      +++     +    ++++  +   P+GA +    D 
Sbjct: 214 DLLLYWAQMMADETIAREIGERFDHVLVDEYQDTNRLQSQILLGLK--PDGAGLTVVGDD 271

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +   T ++              Q+S    +  LD      + + + +N + G +
Sbjct: 272 AQSIYAFRAATVRNILEFPD--------QFSPRADIVTLDRNYRSTQPILSAANAVIGLA 323

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
                  L  D +  R                    L+   +E ++A  I   +    +E
Sbjct: 324 RERFTKNLWTDRTASRKPQ-----------------LVTVRDETDQARYIVEQVLAKREE 366

Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               K+ A++    + +  +++ELTR  I      G+      H   + + L  +    D
Sbjct: 367 GIVLKQQAVLFRTSSHSGPLEIELTRRNIPFVKFGGLKFLDAAHVKDMLACLRFVENPRD 426

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            +A   ++   L     P           E         +                    
Sbjct: 427 RIAGFRVLH--LIPGIGPASAQRLLDAISESADPLRTLCAQPTPARAGEDWTAFVRTLEQ 484

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                W + +          L                 +    G  S   +    
Sbjct: 485 LRSSDWPADIERIRHWYQPHLERVHEDAEMRSADLLQLEQIASGYASRERFLTEL 539


>gi|114319965|ref|YP_741648.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Alkalilimnicola
            ehrlichii MLHE-1]
 gi|114226359|gb|ABI56158.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Alkalilimnicola
            ehrlichii MLHE-1]
          Length = 1242

 Score = 54.9 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 94/871 (10%), Positives = 202/871 (23%), Gaps = 93/871 (10%)

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH---PNGAIVLP 260
                   Q       A  L +     +I      + P   R+   V      P    +L 
Sbjct: 369  RLDQALTQGEAGERLAATLRRQFPVALI-DEFQDTDPVQYRIFQRVYRVADNPREQALLL 427

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS-LAKLLDFLDIKREDVKRLGNVSNE 319
              D       +      S       T    +            +       +       E
Sbjct: 428  IGDPKQAIYSFRGADIHSYLQARRATAGRHYTLPRNFRSTGAMVRGVNRLFQHAEQAWPE 487

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF------SDVALIEADNEREEAIS 373
                  V  ++ +P      +            Q             +        +A +
Sbjct: 488  GAFLFRVAEENPVPFLPVAAQGRAEALEVHGAAQPALTLWWEDEGEPVAGKHYLPRQAAA 547

Query: 374  IAIALRMSLDE------------------NKKKSALITADRNLARRVKLELTRF-GINID 414
             A  +   L+                     +  A++  D N AR ++  L R    ++ 
Sbjct: 548  CASHIVALLNAGAARQAGFRDPDGGLVSLRPRDMAVLVRDYNEARAIQQALARRRVRSVY 607

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
            +S    +  T  +  L   L A  +      +   +  P       E +   A   L   
Sbjct: 608  LSDRESVYRTDAAGDLLRWLRACAEPTVERLLRAALATPTLGLPVAELHRLTADELLWER 667

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQCITP 533
             +   +    +   + ++        +        +R   E      + L + + Q    
Sbjct: 668  RVEQFRGYRRLWQGQGVLPMLRRLLHDFAVPARLVARADGERVLTNLLHLSELLQQAAAE 727

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            L   +        + S +   +     +  +  DE         + +G     +F   I 
Sbjct: 728  LDGEQALIRHLVEHRSGNG--EGGDEQILRLESDEDLVKVVTVHKAKGLEYPLVFLPFIC 785

Query: 594  TGSCIKANAIEWIDIITRLID------GETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
            T   +    + ++D  T           E  + + +++     L  L   +         
Sbjct: 786  TFKPVDGKRLPYLDRTTGGAPRWLFEMDEETRARADRARLAEDLRLLYVAMTRARHACWL 845

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
            GL         +     S V       +       +AA        +   +       + 
Sbjct: 846  GLAPVKRGTRKSNQLHQSAVGYLLAGPEGVVDGGLEAALLRARGEESAIAVTPLPAASDE 905

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                            G             ++     L    +           P  A  
Sbjct: 906  GYRGP-----EHRPALGPARVPRRPAYEHWWIASYSALSLHAE--PAAGEAVGEPARASA 958

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
             T   S  +++I +  A                + P     GT  H ++      +    
Sbjct: 959  STAPESVGQEIIRETVAEAGESAGPDSAALALHRFPRGPGPGTFLHGLLE-WAADQGFAG 1017

Query: 828  TPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFHKI---------------------S 864
              E   L+++ +     +            W     +                       
Sbjct: 1018 LAEQPALLQREVARRCRRRGWSEWAGPVADWLLRLLQADYPLPEGGALRLTALPSYQPEL 1077

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH------LTGFADRIDLLKSGFVDITDY 918
                +      + +++         A             L GF D +   + G   + DY
Sbjct: 1078 EFLFQTRWLNAARLDRAVTAATLDAAPRPPARAALLNGMLKGFIDLVCE-QDGRYYVADY 1136

Query: 919  KTG-----------DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC----RKVANLFYI 963
            K+            +  +     +  D QL L   AL     +++      R V    Y+
Sbjct: 1137 KSNWLGQGLEDYAPEALRAAVLARRYDLQLVLYTLALHRLLRARLPGYDYERHVGGAVYL 1196

Query: 964  RLKQ-KFKIDCITNDKKKYSADELSEKSLKN 993
             L+        + + +   +  E  +  L+ 
Sbjct: 1197 FLRGLDAPGRGLFHCRPPRALIEQLDDWLQQ 1227


>gi|213692897|ref|YP_002323483.1| large hypothetical protein [Bifidobacterium longum subsp. infantis
            ATCC 15697]
 gi|213524358|gb|ACJ53105.1| large hypothetical protein [Bifidobacterium longum subsp. infantis
            ATCC 15697]
 gi|320459072|dbj|BAJ69693.1| conserved hypothetical protein [Bifidobacterium longum subsp.
            infantis ATCC 15697]
          Length = 1431

 Score = 54.9 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 892  ESIGIHLTGFADRID--LLKSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            E + + L+G  DR++  +L  G   + + DYKTG  P  +      D QL      L   
Sbjct: 1220 EHLTVRLSGRIDRMETRVLADGGECIRLIDYKTGRTPTVKQIFN--DLQLVCYQLGL--- 1274

Query: 948  SFSQIDCRKVANLF 961
             F +   R    L 
Sbjct: 1275 VFPEDGPRGAKALA 1288


>gi|225155825|ref|ZP_03724312.1| ATP-dependent DNA helicase [Opitutaceae bacterium TAV2]
 gi|224803477|gb|EEG21713.1| ATP-dependent DNA helicase [Opitutaceae bacterium TAV2]
          Length = 1069

 Score = 54.9 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 66/610 (10%), Positives = 128/610 (20%), Gaps = 79/610 (12%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +   R +        +          P           T+RA  E+R    ++     
Sbjct: 522  PGTGKTRTL-----THRIAHLIADHDAPPES---CLAITFTRRAAGEMRERLAQLLPDGR 573

Query: 73   TILPIIKSLGDVVEEKFTADLL-LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
                ++ +   +           L       V+  +    LAR IL         +    
Sbjct: 574  GSRVLVTTFHALGLTILREQQEKLDLGAPLRVAGEREAFALAREILGISAADARRLFADR 633

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
               P         A  L                 ++DL AL  E       LAA      
Sbjct: 634  AIPPPPAYTQAMRARGL---------------VDFDDLIALTVELLAADPALAAH----Y 674

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
               W                                  + I           +L+  +A+
Sbjct: 675  RARWP--------------------------------HVSIDEYQDVDERQYQLVHYLAD 702

Query: 252  HPNGAI-VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
              N    +    D       +     +      ++   +   Q +         ++    
Sbjct: 703  VENSITSLCAIGDPDQAIYGFRGTDVRFFQQFQTDHPGAHTVQLTRNYRSARPIVEAALQ 762

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                             + +          +    E  +  I++     +L   D  R  
Sbjct: 763  AVAPTTLVRDRALLAQNTDATRLLLRECGTDRAEAEFVVETIERLIGGTSLTSFDTGRAS 822

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
               +               A++         +   LTR GI     A  PLS       L
Sbjct: 823  GAVV------PAHYAFNDIAILYRTDAQTPPLVEALTRSGIPFQKRAHGPLSAHPTVQAL 876

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN----------- 479
             + +  +          +     LA+   P+  L    +AL  +A +             
Sbjct: 877  VTQIKTLPPSPPLAERLSQAAAILARADQPDADLRPITDALRPLAEKHGADLDAFQSELA 936

Query: 480  -KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                 D+ D ++  +  +               +  ED  L                  K
Sbjct: 937  LGVDVDLHDARAERVSLLTLHAAKGLEFRVVFLVGCEDGLLPHRFNFATADASDADTVAK 996

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
            T  +                  L             L        L  +   +++     
Sbjct: 997  TEADIAEERRLFFVGITRAKERLFLTHARRRHWQGELRERYPSPFLRDIRDTLLDRQRED 1056

Query: 599  KANAIEWIDI 608
                     +
Sbjct: 1057 PPATPRARQL 1066


>gi|158521072|ref|YP_001528942.1| exodeoxyribonuclease V, beta subunit [Desulfococcus oleovorans Hxd3]
 gi|158509898|gb|ABW66865.1| exodeoxyribonuclease V, beta subunit [Desulfococcus oleovorans Hxd3]
          Length = 1203

 Score = 54.9 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 87/857 (10%), Positives = 205/857 (23%), Gaps = 70/857 (8%)

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL------- 222
             AL         +  + FL  A K    +   LN        + L R             
Sbjct: 318  QALTGAFDRRIAVEKSRFLGEARKALDAQKQRLNIRYFDDLLLNLDRVLVSDARTGLIEK 377

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +     ++I     + P   R+ S++    +    +   D       +         + 
Sbjct: 378  ARHRYRAVLIDEFQDTDPLQYRIFSSLFQGASALFFI--GDPKQAIYGFRGADVF-AYLE 434

Query: 283  SSNTTYSTHPQYSLAKLLDFLD----------IKREDVKRLGNVSNEMYGRSMVISKSFL 332
            +              +    L                   +          + +   +  
Sbjct: 435  AVPGVDVACTLAENWRSRAGLVTGVNTLFQAVAAPFVFDEINFAPAAPASGAQIPRLTID 494

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI-----ALRMSLDENKK 387
              + + +    +  +      +  + + L+  D   + A  +A+     A         +
Sbjct: 495  GNEPAALELRLMESDDFSTKTQKAAWIQLVARDTAAQAARLVALGREQKAWLGDRPLAAE 554

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
              A++      A  V+  L+R  ++  I     L  +  +  +  LL+A+   +D   + 
Sbjct: 555  DMAILVRRNTEAILVQEALSRLNVHSTILKAGDLFGSHEAFEMQVLLSAVAFAHDLSLVK 614

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
                  +             +       +    +  D+      +       +    +P 
Sbjct: 615  GACATQMMGHDARRIAGLSLEADTTDPVVERFLSYRDLWRRHGFMKMFSRLLRREEVLPR 674

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
              +    E +   +  +  +L        Y   +         +            +  D
Sbjct: 675  LMAFPDGERRCTNLFHLAELLHRTALEAHYGPERLVRWLMRQRTGLQGRNEEHQLRLESD 734

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
            +         + +G      F   + TG+   A          R     ++   +     
Sbjct: 735  DSAVKIITIHKSKGLEYPVTFCPYLWTGTPRTAGGDGVACHEPREDGSLSMVLDLRSGDA 794

Query: 628  LFILGTLESR----LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
              +    E      L     L+   L         +  P  +        L T E  I  
Sbjct: 795  EGVADRRERWYRETLSENMRLLYVALTRAKNQCYVSVVPEKADGSPLAALLGTGEAGISA 854

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
             A +         +  TR    +      S         G        +  G    DW  
Sbjct: 855  DALERVAGQSGGSIHVTRVGPADLHAAPLSA-----EDGGAEAKLSCRRFPGTIAADWRV 909

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK-- 801
                  ++            +    T     +           A     L     F+   
Sbjct: 910  ASFSAMRRSFSGTEADHVAADDGGVTPDPELLSAPYTGIAQFPAGARAGLFMHEVFEYLD 969

Query: 802  --DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
              + D   R  L    ++     R  +    +  ++ +++ +     +    + +    +
Sbjct: 970  FTNADPVYREELVSRELSRYNFDRQWRGP--VCDMVDRVLSTPLPPVSGGEGVRLDSVPM 1027

Query: 860  FHKI--SHSF------------LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905
              +I     F              + +         F +    +A       + GF D +
Sbjct: 1028 DCRINELEFFFPLRSVSPESLAAAYRQAGAGPGNDRFSHALKALAFSPARGVMRGFVDLV 1087

Query: 906  DLLKSGFVDITDYKTG----DNPKKET-------AQKLIDPQLSLEAAALKAGSFSQID- 953
                 G   I D+K+     +              ++    Q  L A AL     +++  
Sbjct: 1088 FFSA-GRYFIVDWKSNLLGPNPESYSQTRLREVMEKEFYLLQAHLYAVALNQYLSARLPA 1146

Query: 954  ---CRKVANLFYIRLKQ 967
                     ++Y+ L+ 
Sbjct: 1147 YDYASDFGGVYYVFLRG 1163


>gi|156932704|ref|YP_001436620.1| exonuclease V subunit beta [Cronobacter sakazakii ATCC BAA-894]
 gi|156530958|gb|ABU75784.1| hypothetical protein ESA_00489 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1180

 Score = 54.9 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 78/864 (9%), Positives = 199/864 (23%), Gaps = 85/864 (9%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRA----EAEHLMKGTKGPIIIAGSTG 237
              A   ++        R  EL     +      +           ++      +I     
Sbjct: 329  ARAMAEIRYTVAQEKRRRGELGFDDMLSRLDEALNQPGGEALAAAIRTRYPAAMIDEFQD 388

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST-----------NITSSNT 286
            + P   R+   +        +L   D       +      +             + ++  
Sbjct: 389  TDPQQYRIFRRIWLGQQETTLLLIGDPKQAIYAFRGADIFTYMRARGEVNAHYTLDTNWR 448

Query: 287  TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
            +     +          +           V      +S+  + +        +   +   
Sbjct: 449  SAPGMVESVNKIFSQMENAFMFRDIPFLAVKPAARNQSLRFTFAGKTQPAMKLWLMEGDG 508

Query: 347  NKIPNIQKCFSDV---ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              + + Q+  + V    + +  +   +  ++      +         ++  +R  A  V+
Sbjct: 509  AGVSDYQQTMARVCAQQIRDWLSAGMKGEALLWREERARPVQASDITVLVRNRIEANLVR 568

Query: 404  LELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
              L    I  + +S    +  T  +  +  LL A+        + + +   +     P  
Sbjct: 569  EALNALNIPSVYLSNRDSVFATQEALEMLWLLQAVLAPEVETRLRSALAASMLGLDAPAI 628

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                            N     + +        +              R   E+      
Sbjct: 629  EAL---------NENENAWDALVEEFDGYRQIWLRRGVMPMLRALMTHRQVAENLLATPG 679

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
                +   +      +          ++  W    +         +  +L +        
Sbjct: 680  GERRLTDILHLSELLQEASAQADSEYALVRWLAQHIAEPDASASSQQLRLESDKHLV--- 736

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
                     I     ++   +    I       +      E  + +  L   E  L   +
Sbjct: 737  -----QVVTIHKSKGLEYPLVWLPFIADFREQKQAFYHDRETFTPMLDLSNAEESLELAE 791

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI-GQAAHDFEMANGTRHLIYTR 701
               L      ++   T      S  +      + A++                   +   
Sbjct: 792  MERLAEDLRLLYVALTRSVWHCSLGVAPLFRRRGAKEGETDLHRSALGRLIQQGEALDAN 851

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
             LR              +   G  D    +           R+L                
Sbjct: 852  GLRRCIEALCDENLALEIP--GEPDNTPWMPPESAPPTLAARELQR-----RIIDEWRVT 904

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL-- 819
                  +  +   +  L          R +  + +      P     GT  H++  E+  
Sbjct: 905  SYSGLQQHGAGRALDLLPKLDLDGAGARDVPDEPVMSPHTFPRGASPGTFLHSLFEEIDF 964

Query: 820  --------------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
                          +        P ++  +  ++ +   +  +   ++ +          
Sbjct: 965  TQPVSPEWVTQQLQLGGFDEAWQPVLSRWIDDVLSAPLNETGVS--LNQLGAKDKQVELE 1022

Query: 866  SFLEHEEKIQSSIEKIFVNI--PAKMAIESIGIH-----LTGFADRIDLLKSGFVDITDY 918
             ++  +  ++       +    P       +        L GF D +   + G   + DY
Sbjct: 1023 FYVPIDAALRPEALDALIREHDPFSAQCPPLDFRQVRGMLKGFIDLVFRWQ-GRYYLLDY 1081

Query: 919  KT---GDNPKKETAQKL--------IDPQLSLEAAALKAGSFSQIDC----RKVANLFYI 963
            K+   GD+P+  T + +         D Q  L   AL      ++      R    + Y+
Sbjct: 1082 KSNWLGDSPEAYTVEAMSQAMQTHRYDLQYQLYTLALHRYLRHRLPDYDYERHFGGVIYL 1141

Query: 964  RLKQKFKIDCITNDKKKYSADELS 987
             L+   K D          A  L 
Sbjct: 1142 FLRGVTKEDMRQGIFTTRPAQALV 1165


>gi|23465763|ref|NP_696366.1| hypothetical protein BL1197 [Bifidobacterium longum NCC2705]
 gi|23326450|gb|AAN25002.1| large hypothetical protein [Bifidobacterium longum NCC2705]
          Length = 1436

 Score = 54.9 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 892  ESIGIHLTGFADRID--LLKSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            E + + L+G  DR++  +L  G   + + DYKTG  P  +      D QL      L   
Sbjct: 1225 EHLTVRLSGRIDRMETRVLADGGECIRLIDYKTGRTPTVKQIFN--DLQLVCYQLGL--- 1279

Query: 948  SFSQIDCRKVANLF 961
             F +   R    L 
Sbjct: 1280 VFPEDGPRGAKALA 1293


>gi|18092679|gb|AAL59408.1| unknown [Burkholderia cenocepacia]
          Length = 4424

 Score = 54.9 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 64/687 (9%), Positives = 149/687 (21%), Gaps = 52/687 (7%)

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                     R  A   M      +  AG+T       RL   + +     +VLP      
Sbjct: 3736 RARCHALAGRHAAGGRMTVGPPRVTAAGTTMPSRRALRLQPRLEHQHRPQLVLPV----- 3790

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                 +                         +    L            V          
Sbjct: 3791 -----HPARLVLAPQPLDRRRIEEAFFAQARRPQQRLG-PVAQRAAQPVVDGRAEALLRP 3844

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
            + +              +        ++  +     +   E   A   A   R ++D  +
Sbjct: 3845 VDQRGRHVPVEQPAQQRLRLPFGQAHRRRHAPREFHDVMIEERHARLEAHGHRRAIDLRE 3904

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                 +    +  R +     R G                   L  +     +     A 
Sbjct: 3905 DVGRQVRERVDRHRLLGEAQMR-GPRGHRVERRRRLLPRQRDALRVMHRRHQQPVQPDA- 3962

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                +H +A+         R    L     R  ++   ++ +      +           
Sbjct: 3963 -AFGRHHMAELVQAIADARRRFARLHAATPRALRDGCQLVRVVGPQRVQRGGDPRAHGAR 4021

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN---LSISDWTKLTVTCLQN 563
            H      +  ++    +    L        Y        G+     +    +  V   + 
Sbjct: 4022 HAMQLAPQARRQEIARVAAEQLVAAVAGQAYLHVPARQFGDEKGRDLRRIGERLVVDRRQ 4081

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
            +  D  R          G  +    ++       ++        ++         + ++ 
Sbjct: 4082 LRHDAERM--------VGGHVKLGMARAEMARDGLRITGFVVAGLVEADRKRVDRRRRLR 4133

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                        +R    +  +   L          ++      ++       +     +
Sbjct: 4134 LHQRDDRRRIDAARQERAERHVGLHL---------PRDGLPQDRVELADGFVGSAFERLR 4184

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            AA    +          R  R   +   A R L         D   +  +RG   L   +
Sbjct: 4185 AARLDHLFERPVRAQARRVARMFELDVRAGRQL--------ADAAIDRVRRGHARLAQVQ 4236

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRT--YSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                   +    R         +        + +++L+ DP A   +   +       + 
Sbjct: 4237 AQRVAVDRAVEARVAAQCLQLGREHQRVADPAVVERLLADPVACERQHPRRAIPQREREH 4296

Query: 802  DPDRTDRGTLF--------HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                  RG           H  +     +R    T E+      ++D   E E++     
Sbjct: 4297 AGRAAQRGLDAPRDDRRDQHLAVGVAAPRRCAPRTLELRAQFAMVVDFAVEDEDVAAARG 4356

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEK 880
                   H+          +  + +  
Sbjct: 4357 SHRLPAVHRQVDDREPPVAERDAGLRV 4383


>gi|312194714|ref|YP_004014775.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311226050|gb|ADP78905.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 1202

 Score = 54.9 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 71/692 (10%), Positives = 160/692 (23%), Gaps = 70/692 (10%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +   R ++ A+ +                         T+RA  EL            
Sbjct: 552  PGTGKTRTLVHAIAHRVRERGVPAG--------ECLAVTFTRRAADELVERL-------- 595

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
                          ++  A          P     + +       +    + +    L  
Sbjct: 596  --------------DQLLAAPRAGGGDGRP----DQRVTATTFHGLGLLVIREQHIRLAR 637

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
               + +      A  LA+ L D    +         +  LK  +     +   D L    
Sbjct: 638  GPHVQVADDAVRAELLAEALGDAAGTVAARAAAARRIGELKRRRSLGDQVR-GDELAGVL 696

Query: 193  KYWTERLVELNASSPVGYQIA-----LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
              +   L E +                   E     +     + +           RL+ 
Sbjct: 697  ARYDAALRERDLVDLDDLLALPLALLTAEPELAEGYRRRFRHVWVDEYQDVDETQYRLLR 756

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +        V+   D       +             +   +     +L +         
Sbjct: 757  ALCPPDGNLTVI--GDPDQAIYSFRGADVGFFLRFEQDFPAARS--AALTRNYRSTGTIV 812

Query: 308  EDVKRLGNVSNEMYGRS----------MVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
               +R    ++ + GR              S +  P          ++       ++  +
Sbjct: 813  AAARRAIAPASFVPGRELVAVHPDGPDAPRSPAGQPAPAGPGGAPVLVRACASEAEEALA 872

Query: 358  DVALIEAD---------NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
             V  IEA          +    A   A  L      +    A++      A  V   L R
Sbjct: 873  VVDTIEAALGGTSFHALDSFAPAQLEAGRLAAGGHLSFADIAVLYRTARQAEPVMAALAR 932

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY----L 464
             G      +  PL+     + L + L A  +     +++  ++   A+           L
Sbjct: 933  RGFPFQRRSHGPLADAPGVAALLAELRAERRDGAARSVSAALRDAAARAAERATARGTVL 992

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
            +    A +           D     S    R+  +            L+     +++   
Sbjct: 993  ATVLGAGQPERPGPPHEQTDPPGASSEAEIRLGVELLAPAAASAGDDLAGFLTAVSLATE 1052

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
               L      ++  T   +      +          L        R        E G+  
Sbjct: 1053 ADTLDPRADRISLLTLHAAKGLEFGLVLIVGCEDGLLPMT---WGRPSRLGDRAEPGQAA 1109

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
            ++     ++  +    +         R +    +     +     +       +    + 
Sbjct: 1110 TAGPDTAVDGRAGAATDPARGPLAEERRLFFVGITRARGRLILSHVTVGAGGTVRRAPSP 1169

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
             L  L+  +  + T +   L R   +   L+ 
Sbjct: 1170 FLADLDPRLLDRVTGRPGQLPRQRPAGKQLRL 1201


>gi|255020481|ref|ZP_05292546.1| Exodeoxyribonuclease V beta chain [Acidithiobacillus caldus ATCC
            51756]
 gi|254970091|gb|EET27588.1| Exodeoxyribonuclease V beta chain [Acidithiobacillus caldus ATCC
            51756]
          Length = 1185

 Score = 54.9 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 70/754 (9%), Positives = 160/754 (21%), Gaps = 93/754 (12%)

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN---GAIVLPGLDCHIPTAIWNTI 274
                 ++     I+I     S      +   +         +++L   D       +   
Sbjct: 383  ALAEALRQRFPVILIDEFQDSSARQYAIFERIYRPSEPWPDSLMLLIGDPKQSIYRFRGA 442

Query: 275  TEKSTNITSSNTTYSTHPQYSLAK-------LLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
               S     ++T    +   +  +        L+ L  + ++    G       G   + 
Sbjct: 443  DLDSYLRARADTAPRHYVLGTNYRSAEPLVGALNALYARADERCPGGAFDYRGEGDDPLP 502

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE--AISIAIALRM----- 380
             ++      S        E       +    +   E      E  A +IA  L       
Sbjct: 503  YQAVAAAGRSQRWQLGGQEGPAITFAQHPLALTKEEFLTHFAEWTAATIAQLLGDSTSGF 562

Query: 381  ------SLDENKKKSALITADRNLARRVKLELTRFGINI-DISAGIPLSTTLHSSILTSL 433
                           A++  DR  A  +   L R G+    +S    +  +  +  L   
Sbjct: 563  VGADGKLRRVGAGDIAILLRDRKEAAIMLSALHRRGLPAAFLSEKQSVYHSPEAEELRLW 622

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            L A+    D  A+         +       L  A++ L  +       + ++  L+    
Sbjct: 623  LFALLHPEDEAAL---------RCALALPLLGLAQHDLWRLDTDEGLWAQEVERLREHAR 673

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                +    T       + +             +   +      +       G  ++ + 
Sbjct: 674  IWAHSGILTTLHRRLHQQATAARILARPDGERRLSNLLHLGELLQQASQHLEGREALLEH 733

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
             +           D      +            +  + I +   ++   +    I     
Sbjct: 734  LQR--------EQDSEDNPADSHVLRLESDAHCIRIRTIHSAKGLQYPLVFLPFIAATRK 785

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            DG     ++        L          D   L      ++   T     L   + +   
Sbjct: 786  DGNVPPWQVVTDDDHSTLSWQSPSAELMDRERLREDLRLLYVALTRAEYALWLGLAAGKT 845

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
              T   +                          +      + L+                
Sbjct: 846  ASTPLWWRSAVGRLL----------------GADEGKTPDQCLETWKRYPACRVLAADTI 889

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                   +    +     P Y                S S    +   P         + 
Sbjct: 890  PSAPAPRFAEPPEPRRTPPVYTARFERDWSIHSFSRLSQSLQTSVGPYPSPDRLDPGAEA 949

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                           G   H ++  L +    +   +         D           + 
Sbjct: 950  AGQGWHTFPQGPGA-GRFLHELLQWLWRD--GRWPEDWREDFLHRCDE--RGYAPWGSVL 1004

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA-----------------IESIGI 896
            + W  +      S L       + +      +P                     +     
Sbjct: 1005 VHWFAVLRA---SPLGSLGTTFAELRGARTEMPFWFPSQHLPTNQLDTLCRQYLLPGRER 1061

Query: 897  HL----------TGFADRIDLLKSGFVDITDYKT 920
             +           GF D +  +  G   + DYK+
Sbjct: 1062 PILGKQNLHGLFHGFMDLVFAV-DGRYYVLDYKS 1094


>gi|160895970|ref|YP_001561552.1| exodeoxyribonuclease V subunit beta [Delftia acidovorans SPH-1]
 gi|160361554|gb|ABX33167.1| exodeoxyribonuclease V, beta subunit [Delftia acidovorans SPH-1]
          Length = 1274

 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 78/831 (9%), Positives = 178/831 (21%), Gaps = 111/831 (13%)

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII-------IAGSTG 237
                   ++       +  +         L  A A       +  I+       I     
Sbjct: 361  LHAAARVAQRLAHLKRQAGSFGFADMLQRLDTALAGDNGAVLRERILAQYPVALIDEFQD 420

Query: 238  SIPATARLMSTVANHP---NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
            + P   RL   +         + +L   D       +      S       T    +   
Sbjct: 421  TSPLQYRLFDQIYRTAANDPHSALLLIGDPKQSIYGFRGADIHSYLQARRATEGRHYVLG 480

Query: 295  SLAKLLDFLDIK--------------------REDVKRLGNVSNEMYGRSMVISKSFLPP 334
            +  +  + L                       R     L        GRS  +       
Sbjct: 481  TNYRSTEALVGAVNHWFAQAEQRSGEGAFMFRRGSHNPLPFEPVAAQGRSEQLHTRDGAM 540

Query: 335  DT-SDMRNTDILENKIPNIQKCFSDVALIEADNEREE---------AISIAIALRMSLDE 384
               +   +    E+    +     +V    A +  E+         A  +    R+    
Sbjct: 541  HALTVAWSAGRDEDTGIPLPLAADEVRRRFAAHCAEQIVQWLTDPQAGFVQPDGRLVRLR 600

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                + L+   R  A   +    R   ++ +S    +  +  +  L   L A+    D  
Sbjct: 601  PADIAVLVRTGREAAAVRRELQARAVASVYLSDQDSVFASDEAHDLLYWLRAVAAPLDAQ 660

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
            A+   +   L      E     A            +  + I     ++     T      
Sbjct: 661  AVRAGLATRLIGLSLDELAWLAADEEAFDARSEQLRELHSIWLRLGVLAMLRQTLYRLDL 720

Query: 505  VPHWQSRLSEEDKELAVL---LVDHILQCITPLVTYKTNKNSTCGN-------------- 547
               W    +   +        L + +      L   +                       
Sbjct: 721  PVRWLQDPAMGGERRLTNYLHLAELLQTASAQLEGEQALIRWLATQIETPGSGSEEQVVR 780

Query: 548  ----LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                  +     +  +      L       +    E  +T     S   E+         
Sbjct: 781  LESDADLVKLVTVHKSKGLEYPLVCLPFAGSFRPMERARTPFLTLSAQDESQDDAAPARR 840

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL------------GGLNE 651
              +D     +     +   E     ++  T     L      L            G    
Sbjct: 841  LLLDFSDEELAQADRERLREDLRLFYVALTRPRHALWLGLAPLKRGNGKACVNEQGAAGY 900

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
             +              +Q          +    A   +            +   ++ P  
Sbjct: 901  LLGGTEPRSAQGWRDGLQQLCGEDPHMAWRDLDAVPLQRTRWQPPA---GATPLHDAPAY 957

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
             +R+  R  +   +     +       L    +     +Q     P P     A      
Sbjct: 958  DARFDTRWGIGSFSALVRAMAAPSLPVLPVAVQRPAEDEQALEPPPSPELADIAGLAGLQ 1017

Query: 772  FSEIKQLINDPYAVYARR--------ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
              +              R          +L+++           +G L   ++    +  
Sbjct: 1018 PLQDGPAGGPAVWHRFLRGPVVGNFVHDQLEWLGGEDFALPVDGQGALADRLVRRCERAG 1077

Query: 824  INKNTPEINHLMKQIIDS--------------HFEKENLPPHIDIIWRHLFHKISHSFLE 869
              +   ++   +  ++                   +         +      ++   F+ 
Sbjct: 1078 RGEQARDLLAWLTAVVHQPLAPLDVTLATLGPQLSEMEFWLPARQLPAERIDQLCRRFIL 1137

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
              ++  +            +   S+   L GFAD +   + G   + DYK+
Sbjct: 1138 PGQERPA------------LPQRSLHGMLMGFADLVFCHE-GRYWVLDYKS 1175


>gi|307300863|ref|ZP_07580638.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C]
 gi|306904397|gb|EFN34982.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C]
          Length = 689

 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 56/533 (10%), Positives = 134/533 (25%), Gaps = 41/533 (7%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL     +  +N      + +   ++RA  E+      I  +       + +     +  
Sbjct: 46  TLAHRVAHLIVNGADPRRILLMTFSRRAAAEMSRRVERICAQVLGRSSGMMT-----DAL 100

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW- 147
             A               +++   A   +  R    D+I  +  E   S   S       
Sbjct: 101 SWAGTFHGIGARLLRIYAEQIGLNAEFTIHDREDSADLINLIRHELGFSKTESRFPTKGT 160

Query: 148 -LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
            LA     +   +   E                W     +      +    + V      
Sbjct: 161 CLAIYSRTVNAEMRLNEV-----LRTWYPWVAGWEQQLQELFAGYVEAKQAQNVLDYDDL 215

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
            + +   +  A     +      +++     +    + ++  +   P+G  +    D   
Sbjct: 216 LLYWAQMVSDASLADDIGNRFDYVLVDEYQDTNKLQSSVLLALK--PDGRGLTVVGDDAQ 273

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               +   T ++              Q++ A  +  LD      + +   +N +   +  
Sbjct: 274 SIYSFRAATVRNILDFPK--------QFAPAAEIITLDRNYRSTQPILAAANGVIDLARE 325

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--E 384
                L  D                         L+   +E ++A  I   +  + +   
Sbjct: 326 RFTKNLWTDRESAERP-----------------KLLTVKDEADQANCIVEQVLANRESGM 368

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
             K+ A++    + +  +++ELTR  I      G+    + H   + ++L       D +
Sbjct: 369 LLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAVLRFAQNPRDRV 428

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
           A   L++            +     A     +   +           +      Q     
Sbjct: 429 AGFRLLQMLPGVGPQTAGKILHTIAADPEPLMALGEVPAPPRSGTDWMSLVELLQALRKP 488

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              W + +          L        T        +    G  S   +    
Sbjct: 489 GSAWPTEIEMARMWYEPHLERIHEDAETRRADLVQLEQIAAGYPSRERFLTEL 541


>gi|148262658|ref|YP_001229364.1| exodeoxyribonuclease V, beta subunit [Geobacter uraniireducens Rf4]
 gi|146396158|gb|ABQ24791.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Geobacter
            uraniireducens Rf4]
          Length = 1085

 Score = 54.5 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 114/1095 (10%), Positives = 244/1095 (22%), Gaps = 175/1095 (15%)

Query: 34   FRYDPLNPLLLASVTIYVPT---------------------------------------- 53
             R      L +  + +   T                                        
Sbjct: 34   LRLVLERQLAVGDILVVTFTEAATKELRERIRERLREAENAFAIGTSSDRLLAGLLESAI 93

Query: 54   -KRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
             + A + L +  +    + S     I ++    +     +   S +L        +   L
Sbjct: 94   DRAAARRLLTTALRSFDEAS-----IFTIHGFCQRMLQENPFESGSLYDTELVTDQQGLL 148

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA----------DIIDIIETE 162
              +   +             ++ L+  + PA  + +A   A              ++  E
Sbjct: 149  REIAADYWRINCYDAPGAAVQTALAAGLGPAALLKIAGRRAGSPFVTVIPQATFPLLPRE 208

Query: 163  E-KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE- 220
                   L A               F    +    +R    N        + L  A    
Sbjct: 209  GEIDPALLEAWLLALKRG-------FFDYLAAELPKRKRRANVRFFEDLLLDLHSALERN 261

Query: 221  -----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                  L++      +I     + P   R+   V    +        D       +    
Sbjct: 262  GSPLPRLIRERYRAALIDEFQDTDPVQFRIFDAVYPAGDETPFFLIGDPKQAIYSFRGAD 321

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFL----------DIKREDVKRLGNVSNEMYGRSM 325
                 + ++  T   H      +    L           ++      +         R +
Sbjct: 322  IF-AYLEAAADTEQRHTLGENWRSEPALIQAVNGLFESRVEPFYFDDIHFSRVTPAEREI 380

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI-----AIALRM 380
             +      PD +  R   +   +            ++ A    E A  +        L  
Sbjct: 381  DLLTMDGKPDPAPFRLWFVNRREAGKPINKGDAWEMLPAAVAGEIARLLQDGSDGRLLIG 440

Query: 381  SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                     A++      AR V+  L + GI   + +   L  +  +  +   L A+ + 
Sbjct: 441  ERPVAPGDIAVLVRAHRQARLVQQALRQRGIPSVLCSAGNLFESDEAEEILRFLKAVAEP 500

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             +   +   +   +            A        L   +  ++I      +   +    
Sbjct: 501  TNERLLKAALVTDMVGVSGDVLAGLLADENSWETVLAEFRLYHEIWTGNGCMAMAMRFLA 560

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                        + E +   +L     +                     I++  K     
Sbjct: 561  VRRVRSRLLPLPAGERRLTNILHCFETIHEAAGEQNLGLEGVIAWLAERIAEEPKR-EEH 619

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
               +  D          + +G     +F          K     + D         TV  
Sbjct: 620  EIRLETDAQAVQLVTIHKSKGLEYPVVFCPFCWAEFGGKEKTALFHD-----EQRTTVVD 674

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
                          +  L     L+   L         A   F      +   L   E  
Sbjct: 675  IGSPDLDAHRRQAAQEGLAESLRLLYVALTRARHRCYLAWGAFKDAGDSAMHYLLHPE-- 732

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-L 739
                A   +             LR       +S  +  L    G  +     +       
Sbjct: 733  ----ALAVKGQVALSDEAMLDDLRRLAEAAESSIAVLPLPEADGISYTPPAVEPDVFTCR 788

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
             ++  +D   +   +             + +   +   L  D   + A            
Sbjct: 789  AFSGAIDQEWRVTSFTAFTTTAGHRPHIQEFPDRDETTLEADTGRLPAE-----PPPSGI 843

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
               P     G  FH I   L       +          +I    +K + P      WR  
Sbjct: 844  FAFPKGAAAGIFFHEIFESL-------DFTAAAETASPLIAELLKKHSFPSD----WRET 892

Query: 860  FHKISHSFLEHEEKIQSS--------IEKIFVNIPA----------------------KM 889
               + ++ L+                +      +                         +
Sbjct: 893  VCSMVNNVLQTPLIQGKGVFTLADVPLGHRLTELEFFFPLAFISSERLKNVATRWNGMDL 952

Query: 890  AIESIGI-----------HLTGFADRIDLLKSGFVDITDYKT----------GDNPKKET 928
             ++   +            + GF D +     G   I D+K+          G    +  
Sbjct: 953  PLDMSELFSRLSFMPVKGMVRGFMDMVFEQG-GRYYIVDWKSNHLGNRIEEYGQAQLQRE 1011

Query: 929  AQKLIDP-QLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSA 983
             ++ + P Q  L   A       ++D     R    ++YI L+    +D           
Sbjct: 1012 MERNLYPLQYLLYTVAFNRYLQLRVDGYDYDRHFGGVYYIFLRG---VDAGRGSGSGTFF 1068

Query: 984  DELSEKSLKNLIEIV 998
            D    + +++L E +
Sbjct: 1069 DRPPRRVIEDLTEAL 1083


>gi|322688620|ref|YP_004208354.1| hypothetical protein BLIF_0432 [Bifidobacterium longum subsp.
            infantis 157F]
 gi|320459956|dbj|BAJ70576.1| conserved hypothetical protein [Bifidobacterium longum subsp.
            infantis 157F]
          Length = 1428

 Score = 54.5 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 892  ESIGIHLTGFADRID--LLKSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            E + + L+G  DR++  +L  G   + + DYKTG  P  +      D QL      L   
Sbjct: 1217 EHLTVRLSGRIDRMETRVLADGGECIRLIDYKTGRTPTVKQIFN--DLQLVCYQLGL--- 1271

Query: 948  SFSQIDCRKVANLF 961
             F +   R    L 
Sbjct: 1272 VFPEDGPRGAKALA 1285


>gi|319949514|ref|ZP_08023565.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
 gi|319436828|gb|EFV91897.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
          Length = 463

 Score = 54.5 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 81/315 (25%), Gaps = 18/315 (5%)

Query: 30  LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKF 89
           +V+  R      + +  V +   +  A   L  E       +      + +   V     
Sbjct: 64  IVDVVRAAVAGGVGMDGVLVLTGSATASASLLEEATRGMPPELV----VGTDAPVRTVHS 119

Query: 90  TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149
            A  ++        +   RL   A    + R  L   + D  P  P  +     + +  A
Sbjct: 120 LAHAVVRLAAARADAPPPRLRTGAEHDALVRETLLGELSDGAPHWPEQM-RPALSTVGFA 178

Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
           + L D++           +L  L        W+ AA FL+   +    R    +A S V 
Sbjct: 179 RELRDLLLRSLERGIGPRELARLGRTAGRPAWVAAAGFLRRHEEQMALRSSVRSAQSDVP 238

Query: 210 YQIALMRAEAEHLMKGTKGP-----------IIIAGSTGSIPATARLMSTVANHPNGAIV 258
             +         L   T  P           + +  +    P  A  ++TV    +  +V
Sbjct: 239 EALNAAELVGAALDALTADPELREIFRSRRLVAVDDAHHLDPLAAEFVATVGGGADVLLV 298

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
           +   D       +                 +               +      RL   + 
Sbjct: 299 VEDGD--QSVFRFRGADGGLARAVIEQGGRAVDLPVGHRMSPAVTAVAARIASRLPGAAR 356

Query: 319 EMYGRSMVISKSFLP 333
                +        P
Sbjct: 357 HRPREAHPREAHGGP 371


>gi|319784375|ref|YP_004143851.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170263|gb|ADV13801.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 697

 Score = 54.5 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 65/546 (11%), Positives = 155/546 (28%), Gaps = 73/546 (13%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE-- 86
           TL     +  +       + +   ++RA  E+      I G+   +      + D +   
Sbjct: 55  TLAHRVAHLIVKGADPRRILLMTFSRRAASEMARRVERIAGE--VLGRDAAVITDALTWA 112

Query: 87  -------EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
                   +   D  L   L+P  +   R    A L+ + R++L     +    +  +  
Sbjct: 113 GTFHGIGARLLRDYALEIGLDPAFTIHDREDS-ADLMNLVRHELGFSKTEARFPTKGTCL 171

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
                              I +     +            W    A+ LK     + E  
Sbjct: 172 A------------------IYSRAVNAQAPLNEVLGSAFPWCAGWAEQLKELFAGYVEAK 213

Query: 200 VELNASSP----VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
              N        + +       E    + G    +++     +    A ++  +   P+G
Sbjct: 214 QAQNVLDYDDLLLYWAQMAAEPEIAAHLGGRFDHVLVDEYQDTNRLQASILMALK--PDG 271

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
           A +    D       +     ++     +        Q++ A  +  L+      + +  
Sbjct: 272 AGLTVVGDDAQSIYSFRAAEVRNILDFPN--------QFAQAADVVMLERNYRSTETILA 323

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
            +N + G +                 ++     + + +K      L+   +E E+A  + 
Sbjct: 324 AANAVIGEA-----------------SERFTKNLWSERKSSDRPKLVTVRDEVEQANFVC 366

Query: 376 IALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
             +    +     K  A++    + +  +++ELTR  I      G+      H   + ++
Sbjct: 367 DTILAEREAGTALKSQAVLFRASHHSGPLEIELTRRNIPFVKFGGLKFLDAAHVKDVLAV 426

Query: 434 LNAIFKLNDFMAIATLVK-------HPLAKFGFPEKYLSRAKNAL--ELVALRGNKNSYD 484
           L       D +A   +++          A+              L       R   +   
Sbjct: 427 LRFAENPRDRVAGFRVLQLLPGIGPSAAAQIVETMTTALDEAMGLAGWRPPQRAADDWPG 486

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
            + L S +        +   +  W     E   E A      +LQ +  + +   ++   
Sbjct: 487 FVALYSGLRAGARWPADLEQIRLWYEPHLERIHEDATTRRADLLQ-LEQIGSGYASRERF 545

Query: 545 CGNLSI 550
              L++
Sbjct: 546 LTELTL 551


>gi|189439818|ref|YP_001954899.1| superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
 gi|189428253|gb|ACD98401.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
          Length = 1428

 Score = 54.5 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 892  ESIGIHLTGFADRID--LLKSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            E + + L+G  DR++  +L  G   + + DYKTG  P  +      D QL      L   
Sbjct: 1217 EHLTVRLSGRIDRMETRVLADGGECIRLIDYKTGRTPTVKQIFN--DLQLVCYQLGL--- 1271

Query: 948  SFSQIDCRKVANLF 961
             F +   R    L 
Sbjct: 1272 VFPEDGPRGAKALA 1285


>gi|227546376|ref|ZP_03976425.1| conserved hypothetical protein [Bifidobacterium longum subsp.
            infantis ATCC 55813]
 gi|227213357|gb|EEI81229.1| conserved hypothetical protein [Bifidobacterium longum subsp.
            infantis ATCC 55813]
          Length = 1437

 Score = 54.5 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 892  ESIGIHLTGFADRID--LLKSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            E + + L+G  DR++  +L  G   + + DYKTG  P  +      D QL      L   
Sbjct: 1226 EHLTVRLSGRIDRMETRVLADGGECIRLIDYKTGRTPTVKQIFN--DLQLVCYQLGL--- 1280

Query: 948  SFSQIDCRKVANLF 961
             F +   R    L 
Sbjct: 1281 VFPEDGPRGAKALA 1294


>gi|317482571|ref|ZP_07941586.1| uvrD4; superfamily I DNA and RNA helicase [Bifidobacterium sp.
            12_1_47BFAA]
 gi|316915993|gb|EFV37400.1| uvrD4; superfamily I DNA and RNA helicase [Bifidobacterium sp.
            12_1_47BFAA]
          Length = 1428

 Score = 54.5 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 892  ESIGIHLTGFADRID--LLKSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            E + + L+G  DR++  +L  G   + + DYKTG  P  +      D QL      L   
Sbjct: 1217 EHLTVRLSGRIDRMETRVLADGGECIRLIDYKTGRTPTVKQIFN--DLQLVCYQLGL--- 1271

Query: 948  SFSQIDCRKVANLF 961
             F +   R    L 
Sbjct: 1272 VFPEDGPRGAKALA 1285


>gi|322690606|ref|YP_004220176.1| hypothetical protein BLLJ_0415 [Bifidobacterium longum subsp. longum
            JCM 1217]
 gi|320455462|dbj|BAJ66084.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum
            JCM 1217]
          Length = 1436

 Score = 54.5 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 892  ESIGIHLTGFADRID--LLKSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            E + + L+G  DR++  +L  G   + + DYKTG  P  +      D QL      L   
Sbjct: 1225 EHLTVRLSGRIDRMETRVLADGGECIRLIDYKTGRTPTVKQIFN--DLQLVCYQLGL--- 1279

Query: 948  SFSQIDCRKVANLF 961
             F +   R    L 
Sbjct: 1280 VFPEDGPRGAKALA 1293


>gi|289640603|ref|ZP_06472775.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
 gi|289509492|gb|EFD30419.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
          Length = 750

 Score = 54.5 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 66/651 (10%), Positives = 144/651 (22%), Gaps = 43/651 (6%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA  ELR     +           ++       +             P  
Sbjct: 75  GQVLAVTFTTRAAGELRGRLRTLGADGV----QARTFHAAALRQLGYFWPRIAGAALP-- 128

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+      +             +        I  AK              
Sbjct: 129 ---------RLVESKIALVGRAASRARLAPSRTELRDLTAEIEWAKATL----------L 169

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH--- 221
             E   A              + +      + +   E          +       EH   
Sbjct: 170 TPEQYPAAATAAGRETTHPP-EVIARLYTAYEQAKREAGVLDFDDLLLLTAAVIEEHGWV 228

Query: 222 --LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
              ++      ++       P   RL+       +   V+   +  I +    +      
Sbjct: 229 AEELRSRYRHFVVDEYQDVNPLQQRLLDAWLGERDSICVVGDANQTIYSFTGASPRYLLD 288

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG--RSMVISKSFLPPDTS 337
                   +              + +    V R+G           S   ++       +
Sbjct: 289 FPRRFPEAHVVRIVRDYRSTPQVVGLANRLVARVGTAGTRGTPGGSSAPGAQGTHGVAGA 348

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITAD 395
            +        ++   +         E D+E EEA + A  +R  L       + A++   
Sbjct: 349 VLAAARHEPPRLVAQRPDGPAPTFTEFDSEPEEAAATARRIRALLGAGVPASEIAVLYRV 408

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +   +  +   GI   +  G         +    LL A  +  D          P+ 
Sbjct: 409 NAQSEAYETAIAAAGIPYLVRGGERFFERPEVAEAVQLLRAAARSADTDR-------PVG 461

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                 +  +                     +L +LV    A    +             
Sbjct: 462 LVAEVTEVFAALGWRGGDPPNGSGAQRERWENLAALVRLAEALVAADPGATLDHFVADLA 521

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
           D+ +   +       +  L   K  +      + +++ T   +       ++E R+L  +
Sbjct: 522 DRAVHQHIPTVEGVTLASLHAAKGLEWDAVFLVGLAEGTLPIIHAQTPAQIEEERRLLYV 581

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWID-IITRLIDGETVKPKIEKSSTLFILGTL 634
                 + L+  ++     G         ++D +  R                +   G L
Sbjct: 582 GVTRARERLALSWALARHEGGRRSRRPSRFLDGLAPRSASSAGRPAGGPAHPGVDGAGAL 641

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
            SR        +             +       +   L  +       +A 
Sbjct: 642 RSRGRAAVRCRVCERPLVGQAARAGRCDGCPANIDQALFERLRAWRSARAR 692


>gi|121582897|ref|YP_973339.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120596159|gb|ABM39597.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
          Length = 619

 Score = 54.5 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 70/683 (10%), Positives = 170/683 (24%), Gaps = 131/683 (19%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
           VT    T+ +  ELR   ++  G       ++ +   +        +         + + 
Sbjct: 50  VTAVTFTRDSALELRDRIVKQAGIDVMSRLLVGTFHSID-----LLMAFPGKAKSAMGSK 104

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
                 + L   W        +     +  +  +                        + 
Sbjct: 105 ILRHSRSSLSQSWVIVKEGNRRSAVARAFDAAAVP---------------------GLEL 143

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-HLMKG 225
           +D  AL                ++  K +T+ L            +       +  +   
Sbjct: 144 DDATALIEGIKSGQVAPKCYEEELLVKTYTDVLERHGVIDFQDILLKTNEGIKDGRISTL 203

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
               +++     +         T+ +   G+I+    D       +         ++  N
Sbjct: 204 RTDYLLLDEYQDTDLPQLTW--TMHHAKTGSIITAVGDDDQSIYGFRRALGFGGMLSFEN 261

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                     L      L +       +   S ++   ++      L  +      T   
Sbjct: 262 D---------LRATRVVLGLNYRSHSEVLEPSAKLIAVNLNRMDKALVSNKGPGGATAWE 312

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405
                               + + EAI+ A  ++ SL+E  +   ++         ++ +
Sbjct: 313 R-----------------FASRKLEAIACAQTIKTSLEEK-QSVGVLARTNKRLDEIETQ 354

Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
                I    SAG  +  T   S+  S L+ + +                          
Sbjct: 355 CIALEIPYSRSAGGSVLKTREMSVFMSALSCMTR-------------------------- 388

Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                                D   L+      +++ T +        +   ++A    D
Sbjct: 389 -----------------SSAKDTDELLAWCGVDEQDLTAL---YQTFGDGLFDVARKRTD 428

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
                I         K +     S SDW     T   ++ +D   +L   + E++     
Sbjct: 429 IGKAPIKDATKLLVAKLAK----SFSDWKAFIRTGGSSMVVDGVVQLLGSYTEDKYSKKM 484

Query: 586 SLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIE------KSSTLFILGTLESRL 638
                 + T    +     +  +     ++      +            + ++    S+ 
Sbjct: 485 LEIVAGVLTPPINENVPLNKAQEHFECRLNTIRAAMERPKTKEDEAGKPVVLMTAHGSKG 544

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
           L FD + + G  E  +P   +                  E+ +   A    M    +HL 
Sbjct: 545 LEFDMVWIVGAEEDTFPDKASSVQ--------------EERRLFYVA----MTRARKHLW 586

Query: 699 YTRSLRENNIPTIASRWLQRLLV 721
            + S + +    +    + R+  
Sbjct: 587 ISASGKLDVSRFVFESGVPRVPD 609


>gi|227819648|ref|YP_002823619.1| DNA helicase [Sinorhizobium fredii NGR234]
 gi|227338647|gb|ACP22866.1| UvrD2 DNA helicase [Sinorhizobium fredii NGR234]
          Length = 688

 Score = 54.5 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 57/535 (10%), Positives = 126/535 (23%), Gaps = 45/535 (8%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL     +  +N      + +   ++RA  E+      I  +   +     S  D +   
Sbjct: 44  TLAHRVAHLIVNGADPRRILLMTFSRRAAAEMGRRVERICSQ--VLGAKAGSFSDALAWA 101

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
            T   + +  L    + I                L +I++     S              
Sbjct: 102 GTFHGIGARLLREHATEIGIDPSFTIHDREDSADLMNIVRHELGFSKTESRFPTKATC-- 159

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
              LA       +     E            W       L+     + +     N     
Sbjct: 160 ---LAT-----YSRAVNAEQPLDEVLRDSFPWCSAWEKQLRELFGAYVDAKQAQNVLDYD 211

Query: 209 GYQIALM----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
              +        A       G    +++     +    A ++  +     G  V+   D 
Sbjct: 212 DLLLYWAQMMGDAVLAEEAGGRFDHVLVDEYQDTNRLQASILLAMKPEGRGLTVV--GDD 269

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +   T ++     +  T    P   +  L               +    +   +
Sbjct: 270 AQSIYSFRAATVRNILDFPATFT----PAAEVITLDRNYR----------STQPILAAAN 315

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD- 383
            VI  +      +     +  E              L+   +E  +A  +   +  + + 
Sbjct: 316 GVIELARERFTKNLWTERESAERP-----------RLVTVRDESVQANYVVEQVLQNREG 364

Query: 384 -ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               K+ A++    + +  +++ELTR  I      G+    + H   + + L       D
Sbjct: 365 GMLLKQQAVLFRTSHHSGSLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAALRFAQNPRD 424

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            +A   L++            +  A  A        ++                  +   
Sbjct: 425 RVAGFRLMQLLPGVGPQTAGRILDAIAADPEPLTTLSEIPAPPRSGNDWTSFVDMLEALR 484

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                W S +          L                 +    G  S   +    
Sbjct: 485 PGRAGWPSEIGTARNWYEPHLERIHEDAEMRKADLLQLEQIATGYPSRERFLTEL 539


>gi|78356969|ref|YP_388418.1| hypothetical protein Dde_1926 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219374|gb|ABB38723.1| hypothetical protein Dde_1926 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 338

 Score = 54.5 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 23/191 (12%)

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
            ++  T ++S  +  +N   A   R I +L  +            G++ H+ +     +R
Sbjct: 1   MSELMTTTYSMWRLFLNCRMACKWRYIDELVPLE----RDPNLAFGSVIHDCLECWHGER 56

Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
                      +   ID  +       H    W HL   +  ++ EH        E + +
Sbjct: 57  -------DLAKVLDHIDRTYPNRAQDDHQQADW-HLARAMMSAYAEHYPA--EEFEVVAL 106

Query: 884 NIPAKMAI-------ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI-DP 935
               +  I        S    L G  D I + + G   + ++KT         ++L  D 
Sbjct: 107 EKTFEGPIVNPATGATSRSFILAGKVDGI-VRQDGQYFLLEHKTASQIDASYLERLWTDF 165

Query: 936 QLSLEAAALKA 946
           Q+ L A  L+ 
Sbjct: 166 QIILYAWYLEQ 176


>gi|238754830|ref|ZP_04616181.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia ruckeri ATCC 29473]
 gi|238706990|gb|EEP99356.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia ruckeri ATCC 29473]
          Length = 1193

 Score = 54.5 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 81/859 (9%), Positives = 205/859 (23%), Gaps = 93/859 (10%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRA----EAEHLMKGTKGPIIIAGSTG 237
              A   ++ + +   +   EL     +      ++          ++      +I     
Sbjct: 328  ARAIREIRASVQQEKQHRAELGFDDLLSRLDIALQPPEGDALSEAIRHRYPVAMIDEFQD 387

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            + P   R+ + V        +L   D       +      +     S  +     + +  
Sbjct: 388  TDPQQYRIFNAVYGGQKDCGLLLIGDPKQAIYAFRGADIFTYIKARSEVSAHYTLETNWR 447

Query: 298  KLLDFLDIKRE-----------DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
              L  +                +      V+     R +                     
Sbjct: 448  SSLPMVRSVNRLFSRVKVPFLFEQIPFIEVNAAEKNRVLDFQIDGETQPALHFWLQQGEG 507

Query: 347  NKIPNIQKCFS---DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              +   Q+  S    + + +     ++  +I    +           ++   R  A  ++
Sbjct: 508  VGVTEYQQLMSRQCAMQIRDWLTAGQQGKAILHTAKGPSSVQASDITILVRSRAEAALIR 567

Query: 404  LELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
              L+   I  + +S    +  T  +  L  LL A+       A+ + +   L        
Sbjct: 568  EALSSLSIPSVYLSNRDSVFDTPEAKDLLWLLQAVLAPEQERALRSAMATSLLGLDAQML 627

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                                  + +                       R   E+   +  
Sbjct: 628  DAL---------NHDEKAWDALVNEFDRYRQHWQKRGVLPMLRELLACRGLAENLLASEG 678

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
                +   +      +  ++       +  W        Q +    H+        E  +
Sbjct: 679  GERRLTDVLHLGELLQEEESQLESEHGLVRWL------AQQIAQPNHQSENQRLRLESDR 732

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             L  + +     G       + ++    +    + +    +    L  L   +      +
Sbjct: 733  HLVQVITIHKSKGLEYPLVWLPFVGNFRQ--QQDVIYHDRQSFEALLDLNASDESKQLAE 790

Query: 643  TLILGGLNEGVWPKNTAKNPF-----LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
               L      ++   T             +         ++ ++    +  + +      
Sbjct: 791  EERLAEDLRLLYVALTRSIYHCSLGIAPLIKGGRKKQGDSDMHLSALGYLVQCSQAGDAA 850

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
                 L E +   IA   + RL         + + +       +TR++    +   Y   
Sbjct: 851  YLAEKLAELSDKDIAVSLVDRLDDKVWQPHNELIPE--LSARQFTRQIFDYWRVTSYSGL 908

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYA-RRILKLDFIPHFKKDPDRTDRGTLFHNII 816
            +      +           +L+       A  + L  + I      P     GT  H+++
Sbjct: 909  QQHGSSRSINIPGDELLPLELLPRLDTDAAGEQGLSDERILTPHTFPRGAAPGTFLHDLL 968

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF---------------- 860
             ++   +          L++  +D           +   W                    
Sbjct: 969  EQIDFSQPLDELWLAEQLLQYGLDEE------WCPVLRQWLTDIASVPLNQSGVTLGSLP 1022

Query: 861  ----HKISHSFLEHEEKIQSSIEKIFVNI--PAKMAIESIGIH-----LTGFADRIDLLK 909
                      +L  +  +Q+    + V    P       +        L GF D +   +
Sbjct: 1023 PKDKQAELQFYLPIDGLLQAEELDLLVKKYDPLSTRCPKLDFKQVRGMLKGFIDLVFCWQ 1082

Query: 910  SGFVDITDYK-----------TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC---- 954
             G   + DYK           T +   +  A+   D Q  L   AL      ++      
Sbjct: 1083 -GKYYLLDYKSNWLGEDSHAYTREAMAQAMAEHRYDLQYQLYTLALHRYLRHRLTDYDYH 1141

Query: 955  RKVANLFYIRLKQKFKIDC 973
            +    + Y+ L+     + 
Sbjct: 1142 QHFGGVIYLFLRGVDGDNP 1160


>gi|46191134|ref|ZP_00206688.1| COG0210: Superfamily I DNA and RNA helicases [Bifidobacterium longum
            DJO10A]
 gi|239622379|ref|ZP_04665410.1| conserved hypothetical protein [Bifidobacterium longum subsp.
            infantis CCUG 52486]
 gi|239514376|gb|EEQ54243.1| conserved hypothetical protein [Bifidobacterium longum subsp.
            infantis CCUG 52486]
          Length = 1398

 Score = 54.5 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 892  ESIGIHLTGFADRID--LLKSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            E + + L+G  DR++  +L  G   + + DYKTG  P  +      D QL      L   
Sbjct: 1187 EHLTVRLSGRIDRMETRVLADGGECIRLIDYKTGRTPTVKQIFN--DLQLVCYQLGL--- 1241

Query: 948  SFSQIDCRKVANLF 961
             F +   R    L 
Sbjct: 1242 VFPEDGPRGAKALA 1255


>gi|260599161|ref|YP_003211732.1| exonuclease V subunit beta [Cronobacter turicensis z3032]
 gi|260218338|emb|CBA33351.1| Exodeoxyribonuclease V beta chain [Cronobacter turicensis z3032]
          Length = 1180

 Score = 54.5 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 95/887 (10%), Positives = 209/887 (23%), Gaps = 82/887 (9%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + D I+    +   +  L           A   ++        R  EL     +     
Sbjct: 308  AVFDAIDALLAEPFTIRDLLI-------ARAMAEIRYTVAQEKRRRGELGFDDMLSRLDE 360

Query: 214  LMRA----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +           ++      +I     + P   R+   +    +   +L   D      
Sbjct: 361  ALNQPGGEALATAIRARYPAAMIDEFQDTDPQQYRIFRRIWLGQHETTLLLIGDPKQAIY 420

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             +      +                          +     +    + N    R +    
Sbjct: 421  AFRGADIFTYMRARGEVNAHYTLD---TNWRSAPGMVESVNRMFSQMDNAFMFRDIPFLA 477

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
                     +R T   + +               +D ++  A   A  +R  L    K  
Sbjct: 478  VKPAARNQSLRFTFAGKTQPAMTLWLMEGDGAGVSDYQQTMARVCAGQIRDWLSAGMKGE 537

Query: 390  ALI---TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
            AL+      R +       L R  I  ++     L+     S+  S  +++F   + + +
Sbjct: 538  ALLWREDRARPVQASDITVLVRNRIEANLV-REALNALNIPSVYLSNRDSVFATQEALEM 596

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
              L++  LA         + A + L            D   +++L  +  A         
Sbjct: 597  LWLLQAVLAPEVETRLRSALAASML----------GLDAPAIEALNENENAWDALVEEFD 646

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
             ++           +  +    Q    L+     +      L +S+  +      +    
Sbjct: 647  GYRQIWLRRGVMPMLRALMTHRQVAENLLATPGGERRLTDILHLSELLQ------EASAQ 700

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
             +       W  +      +  S         K          ++ ++   V        
Sbjct: 701  ADSEYALVRWLAQHIAEPDASASSQQLRLESDKHLVQVVTIHKSKGLEYPLVWLPFIADF 760

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
                      R      L L    E +      +     R++   L        +G A  
Sbjct: 761  REQRQAFYHDRETFAPMLDLSNAEESLELAEMERLAEDLRLLYVALTRSIWHCSLGVAPL 820

Query: 687  DFEMANGTRHLIYTRSLREN---NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
                          RS           + +  L+R +     +              W  
Sbjct: 821  FRRRGAKEGETDLHRSALGRLIQKGEALDANGLRRCIEALCDEHLALAIPGEPDNTPWMA 880

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD- 802
                       +  +     E +  +YS  +          +    +          +  
Sbjct: 881  PESAP-PMLAARELQRRIVDEWRVTSYSGLQQHGAARALDLLPKLDLDGAGARDVPDEPV 939

Query: 803  ------PDRTDRGTLFHNIITEL------------IKKRINKNTPEINHLMKQIIDSHFE 844
                  P     GT  H++   L             + ++         ++ + ID    
Sbjct: 940  MSPHTFPRGASPGTFLHSLFETLDFTQPVSPEWMSQQLQLGGFDDAWQPVLSRWIDDVLS 999

Query: 845  KENLPPHIDIIWR-HLFHKI-SHSFLEHEEKIQSSIEKIFVNI--PAKMAIESIGIH--- 897
                   + +        ++    ++  +  ++       +    P       +      
Sbjct: 1000 VPLNETGVSLNQLGARDKQVELEFYVPIDAALRPDALDALIREHDPLSAQCPPLDFRQVR 1059

Query: 898  --LTGFADRIDLLKSGFVDITDYKT---GDNP--------KKETAQKLIDPQLSLEAAAL 944
              L GF D +   + G   + DYK+   GD+P         +       D Q  L   AL
Sbjct: 1060 GMLKGFIDLVFRWQ-GRYYLLDYKSNWLGDSPQAYTFEAMSQAMQTHRYDLQYQLYTLAL 1118

Query: 945  KAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987
                  ++      R    + Y+ L+   K D          A  L 
Sbjct: 1119 HRYLRHRLPDYDYQRHFGGVIYLFLRGVTKEDARQGIFTTRPAQALV 1165


>gi|312133223|ref|YP_004000562.1| uvrd4 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772425|gb|ADQ01913.1| UvrD4 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1423

 Score = 54.5 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 892  ESIGIHLTGFADRID--LLKSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            E + + L+G  DR++  +L  G   + + DYKTG  P  +      D QL      L   
Sbjct: 1212 EHLTVRLSGRIDRMETRVLADGGECIRLIDYKTGRTPTVKQIFN--DLQLVCYQLGL--- 1266

Query: 948  SFSQIDCRKVANLF 961
             F +   R    L 
Sbjct: 1267 VFPEDGPRGAKALA 1280


>gi|33593011|ref|NP_880655.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
 gi|33563386|emb|CAE42260.1| probable ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
 gi|332382423|gb|AEE67270.1| ATP-dependent DNA helicase [Bordetella pertussis CS]
          Length = 697

 Score = 54.5 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/562 (10%), Positives = 129/562 (22%), Gaps = 61/562 (10%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQE--------LRSEFIEITGKKSTILPIIKS 80
           TL     +  L+      + +   ++RA QE        L+       G  +  LP   +
Sbjct: 52  TLAHRVAHLILHGADPQRMLLLTFSRRAAQEMERRVGGVLQRVMGLRAGHAAPALPWAGT 111

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
              V       D      L+   +   R              L  I++     S      
Sbjct: 112 FHSVGARLLR-DCAPRIGLSEAFTVHDR---------GDAEDLMGIVRHELGLSATHNRF 161

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                      L      I +     +   A    +   W       LK   + +     
Sbjct: 162 P----------LKGTCLAIYSRVVNSQAPLAEVLRQAFPWCEAWEAELKRLFQAYVLAKQ 211

Query: 201 ELNASSPVGYQIALMRAEAEHLMK----GTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           E N        +       +  +          I++     +    A ++  +     G 
Sbjct: 212 EQNVLDYDDLLLYWAEMMRDAGLAADVGARFDHILVDEYQDTNRLQAAILLAMKPDGGGL 271

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V+   D       +   + ++                     +  L+      + + + 
Sbjct: 272 TVV--GDDAQSIYSFRAASVRNILDFPQQFPGG--------AKVVTLERNYRSTQPILDA 321

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           SN + G +       L  D +  +  +                 L+   +E  +A  +A 
Sbjct: 322 SNAVIGLAAERYAKALWTDRASSQRPE-----------------LVSVSDEAGQARWVAD 364

Query: 377 ALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +    +     K  A +    + +  ++LELTR  I      G+      H   + S+L
Sbjct: 365 QVLAQREGGATLKSQAALFRASSHSAALELELTRRNIPFVKFGGLRFLEAAHVKDMLSVL 424

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                    +A   + +            L  A            +        +     
Sbjct: 425 RWAENPRSRLAGFRVAQLVPGIGPATAGKLMDAMAQAADPLAAMREFQPGAAARQQWSEF 484

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                        W + +    +     L              +       G  +   + 
Sbjct: 485 VATYATLREARRPWPADVDAALQWYGPQLERIFDDARVRRADLEQLARLAGGYPTRERFL 544

Query: 555 KLTVTCLQNVCLDEHRKLPNLW 576
                   +   DE        
Sbjct: 545 TELTLDPPDATSDESGPPLRDE 566


>gi|323698851|ref|ZP_08110763.1| UvrD/REP helicase [Desulfovibrio sp. ND132]
 gi|323458783|gb|EGB14648.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132]
          Length = 1051

 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 106/946 (11%), Positives = 220/946 (23%), Gaps = 116/946 (12%)

Query: 72   STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
              + P+++SLG     +     +         + I R   LA     W +          
Sbjct: 124  PPLTPVLRSLGLFDLRESWDKPVKRIIDAARANRIDRAELLACAEKSWES---------- 173

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG------------- 178
                L  P+S  +   L   L   +D    +     D                       
Sbjct: 174  FRQLLPEPLSLQDGRRLDDELRRAVDEALRDLPAPGDGTKATEGVRDRLRIIRNNMRNGA 233

Query: 179  ----MWWLLAADF---------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
                  W+  A F         ++  ++   + L        V   I  M   A   M  
Sbjct: 234  PGCWGDWISLAKFAPGKQSRDIVQPITELAEQVLGHPRLHHDVETYIRKMFECASDAMGR 293

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI--------PTAIWNTITEK 277
             +      G        A  +S + N   G  +   LD  +        P  +   +   
Sbjct: 294  YQQYKKDLGLIDFTDQEALTLSLLENDDIGQRLRERLDLLMVDEFQDTSPIQLALFLRLS 353

Query: 278  STNITSSNTTYSTHPQYSLA----KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
                 S          Y+       L+D +    + V+ LG             +  F  
Sbjct: 354  QVAGKSVWVGDQKQSIYAFRGTDPGLMDAVVENVDRVEVLGESWRSQPDLVRFANAFFGA 413

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVAL----IEADNEREEAISIAIALRMSLDENKK-- 387
                       +E     ++    D  L    ++A+N+  EA  +A  +   L    +  
Sbjct: 414  AMRPHGIPAAQVELVPKVVELETDDPHLMCWRLQANNKTVEAACLASGIVDLLSSAGRHA 473

Query: 388  ---------------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                             A++    +    V   L   GI   +     L     + +  +
Sbjct: 474  VLDKATGGARPLRPGDIAVLCLKNHECELVAEALNDRGIRAAVP-RPGLMAQPETQLALA 532

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
                +   +D +A+A + +  L        +        +L A++       I  L +  
Sbjct: 533  AFRYLADESDLLAVAEMAR--LLAGEEGPDWWLPLVRPGDLEAVKERI--PAIHRLDAAR 588

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
             + +      T         +    +      + +   +  L  Y       CG      
Sbjct: 589  SNLVQLTAVETLDLAVSLVDARPVAKSWPHPGNRLAN-LDALRGYALAYEDACGASRSPA 647

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
             +   +     +  D+  K       +  + L+   SK +E            + +    
Sbjct: 648  TSAGLLAHFSRLAADKEDKQAEGGGSDAVQVLTYHRSKGLE---------WPLVVLTGMD 698

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                     +   S              +          G       +    +   +   
Sbjct: 699  SVDNPRIFGLNVCSDSETFDMDNPLAGRWLRFWPWPFGAGRRIPALEEALEGTAAQRRAE 758

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             ++  E+        +      R  +   +          S WL   +   G   F    
Sbjct: 759  AMERRER----LRLLYVGMTRARDHLVLAARIPGKTDGTTS-WLDACVDETGEKVFVFPL 813

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR---- 788
            + G   +              +                    ++    +P          
Sbjct: 814  EPGVQTIRVGADHQARIDVGSFAPESEGAVPPPGVPRTPALPVEPAGREPARFALGGYPS 873

Query: 789  ------RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                    +++       K  D    G+  H  +  +               +    +  
Sbjct: 874  NGTVRTEAVRIGPPYPIGKREDPARLGSAVHAFLGAVPGGLDRAVRETRAQAVLADWE-- 931

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
                     +  +      ++         +       +    P  +          G+ 
Sbjct: 932  ---------LSEVDAATLCEMQDRLAAFIGERFGD-PGVRTEWPVHLRRGPASGA--GWV 979

Query: 903  DRIDLLKSGFVDITDYK--TGDNPKKETAQKLIDPQLSLEAAALKA 946
            D +  L    V I D+K  TG   + E        QLS  A A+  
Sbjct: 980  DMLLGLPEADV-IIDHKTATGSADRLEAKAASYAGQLSAYAEAMSK 1024


>gi|289751890|ref|ZP_06511268.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T92]
 gi|289692477|gb|EFD59906.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T92]
          Length = 324

 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/328 (8%), Positives = 80/328 (24%), Gaps = 66/328 (20%)

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL------------SR 666
                 +  + +L    +    +D +++ GL +G+WP    +   L            ++
Sbjct: 8   PEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTK 67

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT- 725
                  L   E+ +   A            + + +    +   + S +   +       
Sbjct: 68  DASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGD 127

Query: 726 -DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP----------------- 767
            +            L     +                                       
Sbjct: 128 GEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDDADRDCAATQLARLAKAGVPGADP 187

Query: 768 ---------------------RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                                 T + S ++ L + P    A R    +           +
Sbjct: 188 SEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRE------LPS 241

Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
             G++ H +  E       ++  ++   + + +  H          +         +  +
Sbjct: 242 AVGSVLHALFAE-----PGRSESQLLAELDR-VWGHLPFGAQWYSAN--ELARHRAMIQA 293

Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESI 894
           F++   + +S + ++ V +    A+E  
Sbjct: 294 FVQWRAQSRSELTEVGVGVDIDGALEDG 321


>gi|16263702|ref|NP_436495.1| UvrD2 DNA helicase [Sinorhizobium meliloti 1021]
 gi|14524418|gb|AAK65907.1| UvrD2 DNA helicase [Sinorhizobium meliloti 1021]
          Length = 689

 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/533 (10%), Positives = 134/533 (25%), Gaps = 41/533 (7%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL     +  +N      + +   ++RA  E+      I  +       + +     +  
Sbjct: 46  TLAHRVAHLIVNGADPRRILLMTFSRRAAAEMSRRVERICAQVLGRSSGMMT-----DAL 100

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW- 147
             A               +++   A   +  R    D+I  +  E   S   S       
Sbjct: 101 SWAGTFHGIGARLLRIYAEQIGLNAEFTIHDREDSADLINLIRHELGFSKTESRFPTKGT 160

Query: 148 -LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
            LA     +   +   E                W     +      +    + V      
Sbjct: 161 CLAIYSRTVNAEMRLNEVLRSW-----YPWVAGWEQQLQELFAGYVEAKQAQNVLDYDDL 215

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
            + +   +  A     +      +++     +    + ++  +   P+G  +    D   
Sbjct: 216 LLYWAQMVSDASLADDIGNRFDYVLVDEYQDTNKLQSSVLLALK--PDGRGLTVVGDDAQ 273

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               +   T ++              Q++ A  +  LD      + +   +N +   +  
Sbjct: 274 SIYSFRAATVRNILDFPK--------QFAPAAEIVTLDRNYRSTQPILAAANGVIDLARE 325

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--E 384
                L  D                         L+   +E ++A  I   +  + +   
Sbjct: 326 RFTKNLWTDRESAERP-----------------KLLTVKDEADQANCIVEQVLANRESGM 368

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
             K+ A++    + +  +++ELTR  I      G+    + H   + ++L       D +
Sbjct: 369 LLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAVLRFAQNPRDRV 428

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
           A   L++            +     A     +   +           +      Q     
Sbjct: 429 AGFRLLQMLPGVGPQTAGKILDTIAADPEPLMALGEVPAPPRSGTDWMSLVELLQALRKP 488

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              W + +          L        T        +    G  S   +    
Sbjct: 489 GSAWPTEIEMARMWYEPHLERIHEDAETRRADLVQLEQIAAGYPSRERFLTEL 541


>gi|304396685|ref|ZP_07378565.1| exodeoxyribonuclease V, beta subunit [Pantoea sp. aB]
 gi|304355481|gb|EFM19848.1| exodeoxyribonuclease V, beta subunit [Pantoea sp. aB]
          Length = 1179

 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 90/952 (9%), Positives = 213/952 (22%), Gaps = 123/952 (12%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S+  R  +L + +  +  ++ D           SL  +    +    +L D+I       
Sbjct: 275  SSETRDYQLPKELERFGQQVLDEKTKKGEAPRHSLFEAVDQFLAEPLSLRDVI------- 327

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
               + L  ++        L A            E L +                     +
Sbjct: 328  -IAQALTDVRATVQREKRLRALLGFDDLLSKLDEALQQPGGV------------LLAETI 374

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            +      +I     + P   R+  T+  +     +    D       +      +     
Sbjct: 375  RARFPVALIDEFQDTDPQQYRIFRTLYINQPEQALFLIGDPKQAIYAFRGADIFTYLRAR 434

Query: 284  SNTTYSTHPQYSLA----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
            +  +       +            +L   +D        +          +  +   F  
Sbjct: 435  NEVSAHYTLDTNWRSSPEMVESVNRLFSQID-SPFLFSAIPFQPVMPAAPNQSLKLIFDE 493

Query: 334  PDTSDMRNTDILENKIPNIQ-------KCFSDVALIEADNEREEAISIAIALRMSLDENK 386
                 +R        + N         +C +D++      ++  A          +    
Sbjct: 494  QQQPALRFWLQPGEGVGNSDYQQFMAQQCAADISRWLVAGQQGRACLGKGDALQPVRA-- 551

Query: 387  KKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                ++   RN A  ++  L    I  + +S+   + TT  +  L  LL AI        
Sbjct: 552  SDITVLVRSRNEAGLIRDALNALSIPSVYLSSRDSVYTTPEARELLWLLQAIQAPEQERL 611

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
            + + +   +                     +        +   + ++             
Sbjct: 612  LRSALATSIFAIDAATLDALTQNEREWDALVEQFAVWQQLWHQRGVLPMLRDVMIKRQLA 671

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
             +  +  + E +             +T L+            L             Q + 
Sbjct: 672  ENMLASENGERR-------------LTDLMHLGELLQEASVQLESPHALVRF--LAQQIA 716

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK---- 621
                +        E  + L  + +     G       + +                    
Sbjct: 717  RPNSQAASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFAAGFREAASALYHDRDNFMA 776

Query: 622  --IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                +     +    E RL     L+   L   ++  +    P +    + +      + 
Sbjct: 777  LLDVQGDAQSLALAEEERLAEDLRLLYVALTRSIYHCSVGIAPLIKGTRKKEGESDLHKS 836

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
             +G   +  +          ++ L                  +   +      +R Q   
Sbjct: 837  ALG---YLVQQGEAADAQQLSQKLNALTGEG-----------IALVEADLMPGERWQDAE 882

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                 L                      + +S S +  L N             +     
Sbjct: 883  QGDEVLSSRDVTRALADAWRVTSYSGLQQHHSSSLLDALPNFDIDAAGEDESGEEAALTP 942

Query: 800  KKDPDRTDRGTLFHNIITEL----------------IKKRINKNTPEINHLMKQIIDSHF 843
               P     GT  H +   +                     +   P +   +++++ +  
Sbjct: 943  HHFPRGAAPGTFLHGLFESIDFTELPDRVWLEDQLQHNGYPSDWLPVLEQWIERVLHTPL 1002

Query: 844  EKENLPPHIDIIWRHLFH--------KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
              E L          L           +  +    +   Q     +         ++   
Sbjct: 1003 NAEGLTLSAIKSSERLIEMEFYLPINNLLTAADLDDLLRQHDSLSLQA-----APLDFRQ 1057

Query: 896  IH--LTGFADRIDLLKSGFVDITDYKTG---------DNPKKETAQKL--IDPQLSLEAA 942
            +   L GF D +   + G   + DYK+                 A      D Q  L   
Sbjct: 1058 VRGMLKGFIDLVFRWQ-GKYYLLDYKSNWLGDSHAAYTPEAMAQAMIGHRYDLQYQLYTL 1116

Query: 943  ALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
            AL      ++      +    +FY+ L+                 +   E  
Sbjct: 1117 ALHRYLQHRLPDYHYEQHFGGVFYLFLRGMDGSSPDNGIFATRPGEAFVEAI 1168


>gi|254445124|ref|ZP_05058600.1| UvrD/REP helicase domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198259432|gb|EDY83740.1| UvrD/REP helicase domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 1170

 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 86/828 (10%), Positives = 184/828 (22%), Gaps = 83/828 (10%)

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
             G     +I     +     ++  ++  H     +    D       +      +    +
Sbjct: 352  AGRYDAALIDEFQDTDRTQLKIARSLFGHGE-HYLFYIGDPKQAIYRFRGADIYAYFQAT 410

Query: 284  SNTTYSTHPQ----YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                           S  KL++ ++   E  +         +        +         
Sbjct: 411  QGEGLRNEILDKNYRSAPKLVEAVNALFESSRAGFVDERISFRSVESGLDAADFSSEQPP 470

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
                 L  + P+  K  S+   I A      A   A  L  S +   +  + +  DR  A
Sbjct: 471  FRIVQLRLENPSYPKSKSEYRNILA---ERAANDFAKRLNESPELKAEDVSFLVNDRIEA 527

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF---MAIATLVKHPLAK 456
              +   L + GI+  I A   +  T  +  L  LL A+               + H L+ 
Sbjct: 528  AALSEALLQRGISAAIHADRSVFKTQEAIDLKQLLAALVSPARTSLKRGACAALDHSLSA 587

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                 +        +        ++ +            +A       +   +S     D
Sbjct: 588  VSMRSESFENRVAPVFEYITEWARDWHTRN-------FDVALHGLLRLLNSEESPSGGLD 640

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
             E     +  + + ++     +        N              +        +     
Sbjct: 641  TERRHANICQLGELLSEARDAEELSPRGLYNWLCRKTEANVSHNEEWQTRISSDERKPQI 700

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                          I+      +    E         D   +       S        E+
Sbjct: 701  LTVHKSKGLQFPYVILPFLGLRRVRLKELASAYHGPEDELIIDYAPSPDSPASQHARREA 760

Query: 637  RLLNFDTLILG---GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
               +   L +      +E +      +      +  S       ++   + + D   A  
Sbjct: 761  LAEDIRLLYVALTRAEHENLVYLCPEELSRTGDLACSSFAQFLLDEGE-RTSSDAVAAQL 819

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
                  +          + S    +              +           ++       
Sbjct: 820  HSLAEGSNGSLAFEQSPLDSSGFVQCEATDSHAETAAASENNLQNRARMPFVERVLSFSA 879

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD----PDRTDRG 809
              +       E         E ++  +D   +     L+       +      P  T  G
Sbjct: 880  LNKGMHRDEDENSIELL---EQEESASDELNIEPEAELEQTEAQPLELSIFTLPKGTHAG 936

Query: 810  TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH-SFL 868
             L H I+      R    +         +    FE  +  P +      +        F 
Sbjct: 937  DLLHLILERFDFSRPETLSATTQQAFDAL---QFEPRDFEPIVAAQISSIAKANLKSQFT 993

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIES--------------IGIH----------------- 897
            E   +  S   +I   +     +                +G                   
Sbjct: 994  EFTLEQISPDRRIP-ELEFSYPVSGDVKSNILSALSRSDLGFIPTDWLEGLSHSEAGLPA 1052

Query: 898  --LTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKL----------IDPQLSLEAAAL 944
              L GF D +       + I D+K+    P      +              Q  L   AL
Sbjct: 1053 SMLRGFIDLVLEH-DNRLYIFDWKSNYLGPTPADYDQAAILESMGEHNYFLQYLLYCVAL 1111

Query: 945  KAGSFSQIDCRK----VANLFYIRLKQKFKIDCITNDKKKYSADELSE 988
            K  +  +   +        +FYI ++               S + L  
Sbjct: 1112 KRYAEWRFPGKPFEESFGGVFYIYVRGISPGKETGIFYDLPSPELLQA 1159


>gi|257372987|ref|YP_003175761.1| hypothetical protein Hmuk_3308 [Halomicrobium mukohataei DSM 12286]
 gi|257167711|gb|ACV49403.1| hypothetical protein Hmuk_3308 [Halomicrobium mukohataei DSM 12286]
          Length = 690

 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/447 (10%), Positives = 110/447 (24%), Gaps = 28/447 (6%)

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            R      +      +     D   ++  +     +++A+    +E   A +I      +
Sbjct: 250 PRIARRLAARSGIADTAPDRVDPSPDRRLDQPPRTTEIAVETRHDEARTAAAIVDGALEA 309

Query: 382 LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                  + +        R V+  L+ +G +  +   +PL+ TL   ++ ++   +    
Sbjct: 310 GAGVDDVALVARDVDRYERPVRRALSTYGRHPSVWTQLPLTRTLPYRLVAAVCELLGAAA 369

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
                A  +  PLA      +                      I  L   +     ++  
Sbjct: 370 ADDIAADTLVEPLALQWIAPRGRRD-----------RPTPPSTIHALDRALDGASRSRVG 418

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                     +    +E A  L++ I Q                   +  +         
Sbjct: 419 WLTAVGKLDGVDTTAREAAAGLLNWIGQQPAEPAPADICSVLEPVVDAFEEGVLPRRAAS 478

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET-------GSCIKANAIEWIDIITRLID 614
                 E  +         G        +              +  +    + ++  L  
Sbjct: 479 DGPDYTETAQTARAVERVAGTDDGDHLLRETRAKYADWLERGHLDPSWDTVLTVLDALAT 538

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL---------- 664
               + +   +  + +L   ++ L  +  +I  G  +G WP+                  
Sbjct: 539 ARPGRREHANAERIDVLDATDAWLRTYSLVIALGFVDGEWPQRPHGELPAELRAAIVRGQ 598

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
           +R  +                    +   T HL+ TR  R+ +        L   L    
Sbjct: 599 TRSARQFPVRGAWSTERDLDHFADAVRAATDHLVVTRYTRDVDGVRYDRSPLLAHLDANR 658

Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
                  + R          +D  T  
Sbjct: 659 LAPERVRRLRAGDASTLHDWIDDGTSV 685


>gi|307320004|ref|ZP_07599426.1| UvrD/REP helicase [Sinorhizobium meliloti AK83]
 gi|306894381|gb|EFN25145.1| UvrD/REP helicase [Sinorhizobium meliloti AK83]
          Length = 689

 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/533 (10%), Positives = 134/533 (25%), Gaps = 41/533 (7%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL     +  +N      + +   ++RA  E+      I  +       + +     +  
Sbjct: 46  TLAHRVAHLIVNGADPRRILLMTFSRRAAAEMSRRVERICAQVLGRSSGMMT-----DAL 100

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW- 147
             A               +++   A   +  R    D+I  +  E   S   S       
Sbjct: 101 SWAGTFHGIGARLLRIYAEQIGLNAEFTIHDREDSADLINLIRHELGFSKTESRFPTKGT 160

Query: 148 -LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
            LA     +   +   E                W     +      +    + V      
Sbjct: 161 CLAIYSRTVNAEMRLNEV-----LRTWYPWVAGWEQQLQELFAGYVEAKQAQNVLDYDDL 215

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
            + +   +  A     +      +++     +    + ++  +   P+G  +    D   
Sbjct: 216 LLYWAQMVSDASLADDIGNRFDYVLVDEYQDTNKLQSSVLLALK--PDGRGLTVVGDDAQ 273

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               +   T ++              Q++ A  +  LD      + +   +N +   +  
Sbjct: 274 SIYSFRAATVRNILDFPK--------QFAPAAEIVTLDRNYRSTQPILAAANGVIDLARE 325

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--E 384
                L  D                         L+   +E ++A  I   +  + +   
Sbjct: 326 RFTKNLWTDRESAERP-----------------KLLTVKDEADQANCIVEQVLANRESGM 368

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
             K+ A++    + +  +++ELTR  I      G+    + H   + ++L       D +
Sbjct: 369 LLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAVLRFAQNPRDRV 428

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
           A   L++            +     A     +   +           +      Q     
Sbjct: 429 AGFRLLQMLPGVGPQTAGKILDTIAADPEPLMALGEVPAPPRSGTDWMSLVELLQALRKP 488

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              W + +          L        T        +    G  S   +    
Sbjct: 489 GSAWPTEIEMARMWYEPHLERIHEDAETRRADLVQLEQIAAGYPSRERFLTEL 541


>gi|218663804|ref|ZP_03519734.1| ATP-dependent DNA helicase protein [Rhizobium etli IE4771]
          Length = 814

 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/541 (11%), Positives = 142/541 (26%), Gaps = 57/541 (10%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI----TGKKSTILPIIKSLGDV 84
           TL     +  +       + +   ++RA  E+      I     G K+ ++    +    
Sbjct: 170 TLAHRVAHLIVKGADPRRILLMTFSRRAAAEMARRVERICRDVLGSKAGVMADALTWSG- 228

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                 A LL  YN        +++   A   +  R    D++  +  +   S   S   
Sbjct: 229 TFHGIGARLLRDYN--------KQIGLDADFTIHDREDSADLMNLIRHDLGFSKTESRFP 280

Query: 145 AIW--LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
           A    LA         I +     E            W       L+     + E     
Sbjct: 281 AKGTCLA---------IYSRAVNSETALDQVLRDAFPWCAAWEKQLRELFACYVEAKQAQ 331

Query: 203 NASSPVGYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
           N        +   +   E+++          +++     +    A ++  +   P G  +
Sbjct: 332 NVLDYDDLLLYWAQMVGENVIAEDIGSRFDHVLVDEYQDTNRLQASILMALK--PGGRGL 389

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               D       +   T ++     +  +    P  ++  L               +   
Sbjct: 390 TVVGDDAQSIYSFRAATVRNILDFPAAFS----PPANIVTLDRNYR----------STQP 435

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            +   + VI  +      +        E              L+   +E ++A  +A  +
Sbjct: 436 ILTAANAVIDLASERFTKNLWTERQSAERP-----------RLVTVRDEADQARYVADKV 484

Query: 379 RMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             + +E    K+ A++    + +  +++ELTR  I      G+    + H   + + L  
Sbjct: 485 LDNREEGLKLKQQAVLFRASHHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAALRF 544

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                D +A   L++          +                          +       
Sbjct: 545 AQNPRDRVAGFRLMQILPGVGPSTAQKALDLMAEDASPLTALAAMPAPPRCGEDWAAFVS 604

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
             Q+  +    W + +    +  A  L        T        +    G  S   +   
Sbjct: 605 MLQEMKSGKAGWPAEIELARRWYAPHLERLHEDAATRQADLLQLEQIAGGYASRERFLTE 664

Query: 557 T 557
            
Sbjct: 665 L 665


>gi|170696477|ref|ZP_02887603.1| exodeoxyribonuclease V, beta subunit [Burkholderia graminis C4D1M]
 gi|170138630|gb|EDT06832.1| exodeoxyribonuclease V, beta subunit [Burkholderia graminis C4D1M]
          Length = 1233

 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 83/833 (9%), Positives = 195/833 (23%), Gaps = 70/833 (8%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPI 230
            +   W  +   +L  A      R       S       L RA A H      ++      
Sbjct: 333  QRARWLAIVQTWLDHAPAELVARKRTRRVVSFDDLLSNLYRALAAHPWLADALRARYPAA 392

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            +I     + P    + S +        +    D       +      +     ++ +   
Sbjct: 393  LIDEFQDTDPLQFAIFSRIFAPAG--PLFLVGDPKQAIYSFRAADLHTYLAARASASARY 450

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
                +       +D      +               +             ++   +  I 
Sbjct: 451  TLAVNQRSTAPIVDACNRVFEANPQAFVLEGLDYQPVRAGERRRPPFSDPDSSGGDFCIW 510

Query: 351  NIQKCFSDVALIEADNEREEA--ISIAIALRMSLD---------ENKKKSALITADRNLA 399
             +      +   EA  E  EA    I   LR + +               A++       
Sbjct: 511  TLPPGEQALTKREAQREASEACAAEIVRLLRGAREGTVTIGDAPLAPGNIAVLVQTHKQG 570

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
              +K  L  +G+     A   +  TL +  +  +L A+    D   +   +         
Sbjct: 571  SLIKRVLAAWGVGSVELAQASVFATLDAEQIERVLAAVDTPGDLRRLRAALATDWLGLDA 630

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
               +          VA      +  +  ++     R+   +    V  W++ + E     
Sbjct: 631  AALWRLEQVADAPAVADDPAHAADAMGWVERFSRYRMLWHERGFAVM-WRTLMRELRVAQ 689

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
             ++      + +T +        +          T   +   +     E  +L       
Sbjct: 690  RLVAAPDGERRLTNVNHLAELVQARAATQPGIAPTLRWLAAQRAQGGGEEAQLRLESDRN 749

Query: 580  EGKTLSSLFSKIIETGSCI--KANAIEWIDIITRLIDGETVKPKIEKSSTLF-------- 629
              + ++   SK +E         N     +  +  +            + L         
Sbjct: 750  LVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPSSGLPDAREYHDPGGDAVLHYGCDDEEA 809

Query: 630  ---ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
                      +      L+   L   V+        +LS     +         +  + +
Sbjct: 810  ERAARHAAREQAAERARLVYVALTRAVYRCYLVAGTYLSSRSTKESRRSVLNWLVAGSGY 869

Query: 687  DF----------EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
            +F             +     +    +    +P +  R     +   G        +R  
Sbjct: 870  EFDDWLADPPDEAALSARWQALAGGPIALQPLPKVERRRPLESMQESGAHKRARSHRRSL 929

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                                    P  E +P     +++        A      +     
Sbjct: 930  RDQWRMASFSGLIAAGDKAEEAQAPLEEVRPDHDEIADVLAAAPTLLAPAPALQVSSLAA 989

Query: 797  PHFKKDPDRTDRGTLFHNIITEL---------------IKKRINKNTPEINHLMKQIIDS 841
                  P     G   H +                   +++R    +P++   +  ++  
Sbjct: 990  DDILAFPRGAAAGECLHRMFELADFGDPRTWPHAIRGALRERPAPASPDLAPRLPAMMHK 1049

Query: 842  HFE-----KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-KMAIESIG 895
              E     +      +  +                    +++  + +      +A+E   
Sbjct: 1050 LLEDVVSTELVPGMTLAQLDPRRRLNELEFLFAAPSLDFAALRALLIEHGYPDVALEPGA 1109

Query: 896  IH--LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            +   + GF D I     G   I D+K+    +       +     LEAA    
Sbjct: 1110 LRGFVKGFIDMIVEH-DGRFWIVDWKSNHLGETAEDYSAV----PLEAAMASH 1157


>gi|330971986|gb|EGH72052.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. aceris
            str. M302273PT]
          Length = 1230

 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 100/962 (10%), Positives = 227/962 (23%), Gaps = 144/962 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
               +  W         DL        P   A A           + +   +   + L   
Sbjct: 271  FEKLAAWAADDTQEALDLGTGFTRLTPEGIAEAWKGDPPAHPAFEAMAQLKAALDGLPKP 330

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKG 228
                       AA ++ +  +    R  E+     +    A +          L++    
Sbjct: 331  DAAVL----QHAAQWVSVRFEEEKRRRAEMGFDDMLLRLDAALHGAGGERLATLIREQFP 386

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSN 285
              +I     + P   R+  ++           +    D       +      +       
Sbjct: 387  VALIDEFQDTDPVQYRIFDSIYRLEANDEQTGLFLIGDPKQAIYAFRGADIYTYLRARQA 446

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
            T    H   +  +    +      V  L     +  G  +   +       SD       
Sbjct: 447  TDGRWHTLDTNYRSSHAMVESVNRVFTLAEQREQGRGAFLFRDEHGNQVPFSDALAQGRK 506

Query: 346  ENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK---------- 387
            E    +     +  V  +++D         ++ A S A  +   L+  ++          
Sbjct: 507  ETLHVDGAPLTALTVWHLQSDQPVSGVVYRQQLAASCASEIVRLLNAGQQGSAGFVTPDS 566

Query: 388  --------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                      A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A  
Sbjct: 567  TLRGLRPADIAILVRDGKEAQAVRQQLTARGVRSVYLSDKDSVFAAQEAHDLLSWLKACA 626

Query: 439  KL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            +        A    +   L                  ++  RG +  +    +  ++   
Sbjct: 627  EPDSERTLRAALACITLDLPLAELERLNQDELAWERRVMQFRGYRAIWRSQGVLPMLRRL 686

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            +        +      ++  D E  +  + H+ + +         + +           +
Sbjct: 687  LHDFALPQTL------MTRNDGERVLTNLLHLSELLQQAAAELDGEQA---------LIR 731

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                 L         ++  L  +E+   + ++          +    I            
Sbjct: 732  HLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFIC---------SS 782

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD-LNL 674
            + V             G  +  L   + LI    +E +          L+R   +  L +
Sbjct: 783  KPVDGSRLPLQFHDADGKSQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGV 842

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
               ++     +     A G                   + WL+ L    G      + + 
Sbjct: 843  ADLKRGNANTSMLHRSALG----YLLGGGAALAESAELNIWLRDLAQGCGAIALQPVPEP 898

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND--PYAVYARRILK 792
                    R      K    KR        A        +      D  P +  A+++  
Sbjct: 899  TDERFSAPRNAAALVKLLVPKRRAAENWWIASYSALRIGDTVTAGADESPDSPQAQKLFD 958

Query: 793  LDFIPHFKKD------------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             + +                  P   + GT  H ++     +         + L   +  
Sbjct: 959  DERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFANTAHAPDKLQDAVAR 1018

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-----------VNIPAKM 889
                +          W +         L    ++      +            V +    
Sbjct: 1019 RCNRRG------WAGWINTLSDWLQHLLNMPLRLSPDAAPVALGELDQPNQYRVEMEFWF 1072

Query: 890  AIESIGIH---------------------------LTGFADRIDLLKSGFVDITDYKTGD 922
            A  ++ +                              GF D     + G   + DYK+  
Sbjct: 1073 ASNNVNVAQMDALVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHE-GRYYVADYKSNW 1131

Query: 923  NPKKETAQKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                ++A               D Q  L   AL     +++      + +    Y+ L+ 
Sbjct: 1132 LGSDDSAYTPLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYDYDQHMGGALYLFLRG 1191

Query: 968  KF 969
              
Sbjct: 1192 SR 1193


>gi|119357210|ref|YP_911854.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Chlorobium
            phaeobacteroides DSM 266]
 gi|119354559|gb|ABL65430.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Chlorobium
            phaeobacteroides DSM 266]
          Length = 1221

 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 87/913 (9%), Positives = 216/913 (23%), Gaps = 134/913 (14%)

Query: 186  DFLKIASKYWT-----ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
            D L    +          +++  A S      A   A     ++      +I     + P
Sbjct: 347  DLLADLYQALQGGYESAAIIQGGAESVAISGGAESAAALAEALRKRYRAALIDEFQDTDP 406

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                +   +      A +    D       +      +    +S+        ++L    
Sbjct: 407  VQYDIFRRIYAGSE-APLFLIGDPKQAIYSFRGADIFAYMQAASDVGRERS--FTLNTNW 463

Query: 301  DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN-KIPNIQKCFSDV 359
              +    +    L + +   +    + S   +            +   +I  ++    D 
Sbjct: 464  RSVPKLLDAFNLLFDSARHPFVFDNIPSPPLVAGKGLPRDAESPVSPLEICLLRSGDGDG 523

Query: 360  ALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISA 417
            +L   ++ER  A + A  +  +++        A+I      AR ++  L   GI   + +
Sbjct: 524  SLKSGESERFAAGACASMVTETINGGSDAGDIAVIVRTHRQARMMQAALRECGIVSVMRS 583

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
               +  ++ +  +  L+ A+ +      +   +  PL      +           +  L+
Sbjct: 584  DESVFASVEAEEVRILVTALAEPGRESLVRAALVTPLFGLNGSDIARLNDDENAWVERLQ 643

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
              +  + +   +  +L                 R     + L  L      + +T ++  
Sbjct: 644  QFREYHRLWQERGFMLMV-----------RELMRHEAVRERLLALSGSSGERALTNVLHC 692

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                +    +  +    +  VT                   E  +    + +  +  G  
Sbjct: 693  FELLHREAHSRGLG--MEGLVTWFGERVAAREPGEEYQIRLESDEPAVRIVTAHVSKGLQ 750

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                   +                      +           +F +  +         ++
Sbjct: 751  YPIVFCPF-----------QFGGAGSGGDVVLFHDDDGRMKRDFGSRAIEHHRALASRES 799

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQA--AHDFEMANGTRHLIYTR----SLRENNIPTI 711
             A+N  L  V  +    +                    +           + +   +   
Sbjct: 800  LAENLRLFYVALTRAERRCIFFTARIVDGRQSGRTPMLSPSSYLLYVSDEARQSPRVIGE 859

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            A   L  L      +   ++       +                R           R ++
Sbjct: 860  AQHELAALDAGEMAERLQSMSDESGGAIRLRPLSLDDDLTLPLVRTAAAASPSFVLREFT 919

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKD-----------------------PDRTDR 808
             S         +   +R       +P   +                        P     
Sbjct: 920  ASIETDWRIASFTTLSRHRHMAFELPDRDESAPEQQAAAAPAVLPDTDRSIFAFPKGAGA 979

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            G L H+I   L          +     + +ID    +       D  W+     +    L
Sbjct: 980  GILMHSIFETL----------DFAFATESVIDEASVRALDRYGYDRHWQPCLTGMVRQVL 1029

Query: 869  EHEEK----------IQSSIEKIFVNIPAKMA--------------------------IE 892
                           ++       +     +                           ++
Sbjct: 1030 STPLSSPEGSFTLGGLRQGSWSTELEFFFPLRHVTSPRLSELLMRHGVIPNGADPAAALQ 1089

Query: 893  SIGIH-----LTGFADRIDLLKSGFVDITDYKTGDNPKKETA-----------QKLIDPQ 936
            ++        L GF D +     G   + D+K+        A           + L   Q
Sbjct: 1090 ALDFTPVKGMLMGFMDMVFE-AEGRYYLLDWKSNHLGNAVEAYHRDHLGKAMQENLYRLQ 1148

Query: 937  LSLEAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992
              L   AL      ++             Y+ L+    +     ++  +  D   E  ++
Sbjct: 1149 YLLYTVALDRFLSLRVPGYRYETHFGGAIYVFLRG---VSAERGEEYGFFRDLPPEALIR 1205

Query: 993  NLIEIVTLLQNGE 1005
             L E++   + GE
Sbjct: 1206 ELQELLIETETGE 1218


>gi|187923606|ref|YP_001895248.1| exodeoxyribonuclease V subunit beta [Burkholderia phytofirmans PsJN]
 gi|187714800|gb|ACD16024.1| exodeoxyribonuclease V, beta subunit [Burkholderia phytofirmans PsJN]
          Length = 1232

 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 78/800 (9%), Positives = 179/800 (22%), Gaps = 63/800 (7%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAG 234
            W  L   +L  A      R       S       L RA A H      ++      +I  
Sbjct: 339  WLSLVQTWLDYAPAELVARKRTRRVVSFDDLLSNLYRALAAHPWLADALRTRYPAALIDE 398

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
               + P    + S +        +    D       +      +        +       
Sbjct: 399  FQDTDPLQFAIFSRIFAPAG--PLFLVGDPKQAIYSFRAADLHTYLAAREAASACYTLAV 456

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            +       ++      +               +             +    + +I  + +
Sbjct: 457  NQRSTAPIVEACNRLFEANQQAFVLEGLDYQPVRAGERRRPPFSDPDASAGDFRIWTLPQ 516

Query: 355  CFSDVALIEADNEREEA--ISIAIALRMSLD---------ENKKKSALITADRNLARRVK 403
              + +   EA  E  EA    I   LR + +               A++         +K
Sbjct: 517  GEAALTKREAQREASEACAAEIVRLLRGAREGTVTIGDEPLAPGNIAVLVQTHKQGSLIK 576

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L  +G+     A   +  TL +  +  +L A+    D   +   +            +
Sbjct: 577  RVLAAWGVGSVELAQASVFATLDAEQIERVLAAVDTPGDLRRLRAALATDWLGLDAAALW 636

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                      VA      +  +  ++     R    +    V  W++ + E      ++ 
Sbjct: 637  RLEQVADAPSVADDPAHAADAMGWVERFSRYRTLWHERGFAVM-WRTLMRELRVAQRLVA 695

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE--- 580
                 + +T +        +          T   +   +     E  +L           
Sbjct: 696  AADGERRLTNVNHLAELVQARAATQPGIAPTLRWLAAQRTQGGGEDAQLRLESDRNLVQI 755

Query: 581  -------GKTLSSLFSKIIETGSCIKANAIEWIDIIT-------------------RLID 614
                   G   + +F   +  G   +  +    D                          
Sbjct: 756  VTVHKSKGLEYAVVFCPFLNDGGLREPPSSGLPDAREYHDETGDAVLHYGCDDEEAEHAS 815

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
               V+ +  + + L  +    +    +        +        +   +L      D   
Sbjct: 816  RYAVREQAAERARLVYVALTRAVYRCYLVAGTYQSSRSTKESRRSVLNWLVAGEGHDFGD 875

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW--LQRLLVLGGTDFFDNLK 732
              AE     A      A     +      +      + S      R+          +  
Sbjct: 876  WLAEPPDEAALSARWQALAGGPVTLAALPKPARRVPLESLLDRSARMQARANRRPLRDQW 935

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA-------- 784
            +                     +  +P     A     + +         YA        
Sbjct: 936  RMASFSGLIAAGSKSEETHAPVEEVRPDHDEIADALAVTSTLAPAPQAPVYAEDDILAFP 995

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
              A     L  +       +           + E     +++    +  +M  ++     
Sbjct: 996  RGAAAGDCLHRMFELADFSEPHTWTDAIRGALRERPAPAVSELAAHLPAMMHNLLRDVVT 1055

Query: 845  KENLPPHIDIIWRHLFH-KISHSFLEHEEKIQSSIEKIFVNIPA-KMAIESIGIH--LTG 900
             E  P                            ++ ++ +      +A+E   +   + G
Sbjct: 1056 AELQPGMTLARLNPRRRLNELEFLFAAPSLDFPALRELLIEHGYPDVALEPGVLRGFVKG 1115

Query: 901  FADRIDLLKSGFVDITDYKT 920
            F D I     G   I D+K+
Sbjct: 1116 FIDMIVEY-DGRFWIVDWKS 1134


>gi|118467867|ref|YP_885717.1| exodeoxyribonuclease V subunit beta [Mycobacterium smegmatis str.
           MC2 155]
 gi|5678922|gb|AAD46808.1|AF157643_2 RecB [Mycobacterium smegmatis]
 gi|118169154|gb|ABK70050.1| exodeoxyribonuclease V, beta subunit [Mycobacterium smegmatis str.
           MC2 155]
          Length = 1083

 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 73/904 (8%), Positives = 168/904 (18%), Gaps = 164/904 (18%)

Query: 115 LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174
           L+    + + +I+ DLY          P  +   A  LA +             L     
Sbjct: 141 LVESLDDLVSEIVDDLYLAHFGGQKDDPELSYPEALKLARV-----VVGNPATQLRPRDP 195

Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP----- 229
           +      +    F +        R               L  A                 
Sbjct: 196 DPDSPAAVR-LKFARDVLAELEIRKRRRGVLGYDDLLTRLADALEPEDSPARVRMQQRWP 254

Query: 230 -IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            +++     + P   +++    +  +  +++   D       +      +    ++    
Sbjct: 255 IVMVDEFQDTDPVQWQVIERAFSGRSTLVLI--GDPKQAIYAFRGGDIATYLRAAATAGD 312

Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                         L       + L                                +  
Sbjct: 313 K-----------QTLGTNWRSDRAL----------------VDRLQAVLRGAQLGGPDIV 345

Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
           + ++Q       L+ A        +    LR+   +      +      L R +  +L  
Sbjct: 346 VHDVQARHQGHRLVGAP------RNDPFRLRVVSRKPGNTRVI--PIDQLRRHIGRDLAA 397

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
               +  S                      +      IA + +             +   
Sbjct: 398 DISALLNSGAT----------------WCDQPVQAKDIAVITET----HKDARACHAALL 437

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
            A       G+ + +     +  +    A  + +       +  +    E A  L     
Sbjct: 438 AAGIPAVYTGDSDVFTSEAAEDWLYLLEAFDQPHRPGLVRAAAATMFFGETAESLAAGGD 497

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                +               ++   +          +   +    L  +    T     
Sbjct: 498 ALTDRVADTLREWAGHARERGVAAIFEAAQLAGMGKRVLSWQGGERLMTDLAHMTQLLQD 557

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
           +   E                 R  + E  +     ++ + I+    S+ L F  + L  
Sbjct: 558 TAHREGFGLAALRDWLRTQRSERGGESERNRRLDSDAAAVQIMTVWVSKGLQFPVVYLPF 617

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ--------AAHDFEMANGTRHLIYT 700
                 P+               +                   +   +      +  +  
Sbjct: 618 AFNRYVPEPDLVLFHDDGQRCLHVGGADPAVARAGRAEAAGDDSRLTYVALTRAQSQVVA 677

Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY------------- 747
                 + P      L R    G     D          D   +L               
Sbjct: 678 WWAPSYDEPNGGLSRLMRGRAPGEAIVPDKCSPPKISDEDALERLRAWEAAGGPVIEESV 737

Query: 748 -----TTKQPHYKRP-KPFPPLEAQPRTYSFSEIKQLINDPYAV---------------- 785
                                  A    +  +    L+                      
Sbjct: 738 IGAVSPVPPEPAPEDLAARKFFRAIDMAWKRTSYSGLLRAAETAGVGVSSEPEVTERDDE 797

Query: 786 -----YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
                        D        P     G+L H ++           T E+   +     
Sbjct: 798 FDDIPVVAPAEGADVPSPMAHLPTGAAFGSLVHAVLET-ADPFAEDLTAELATHIDAH-S 855

Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--- 897
            H+  E     +      +               Q  +      +  +  +    +    
Sbjct: 856 QHWPVEVETAELAAALVPMHDTPLGPLAPGLTLRQIGLRDRLCELDFEFPMAGGDLRGGR 915

Query: 898 -----------------------------------------LTGFADRIDLLKSGFVDIT 916
                                                    L+G  D +  +      I 
Sbjct: 916 FARLSDVGELLREYLPADDPLAVYAERLSTGILGVQPLRGYLSGSVDAVLRVGE-KFVIV 974

Query: 917 DYKT 920
           DYKT
Sbjct: 975 DYKT 978


>gi|148258686|ref|YP_001243271.1| ATP-dependent DNA helicase Rep [Bradyrhizobium sp. BTAi1]
 gi|146410859|gb|ABQ39365.1| ATP-dependent DNA helicase, Rep family [Bradyrhizobium sp. BTAi1]
          Length = 686

 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/535 (11%), Positives = 133/535 (24%), Gaps = 47/535 (8%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL     +  +N      + +   ++RA  E+      I  K         + G      
Sbjct: 46  TLAHRVAHLLVNGADPRRILLMTFSRRAAAEMSRRVERIARKVLGGQAEAITAGLTWAGT 105

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
           F                I  +  +        ++               L  +       
Sbjct: 106 FHGLGARMLRDYAERIGIDAVFTI-------HDREDSADLMNLVRHERGLSNTQRRFPTK 158

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
              LA     I +     +        ++  W    A  LK     + E           
Sbjct: 159 GTCLA-----IYSRCVNADMTLDEALVRHFPWCTEWAAELKGLFAAYVEAKQANAVLDYD 213

Query: 209 GYQIALMRAEAE----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
              +   +  A+      +      +++     +    ++++  +   P+G  +    D 
Sbjct: 214 DLLLYWAQMMADETIAREIGERFDHVLVDEYQDTNRLQSQILLGLK--PDGVGLTVVGDD 271

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +   T ++              Q+S    +  LD      + + + +N + G +
Sbjct: 272 AQSIYAFRAATVRNILEFPD--------QFSPRADIVTLDRNYRSTQPILSAANAVIGLA 323

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
                  L  D +  R                    L+   +E ++A  I   +    +E
Sbjct: 324 RERFTKNLWTDRTASRKPQ-----------------LVSVRDEADQARYIVEQVLAKREE 366

Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               K+ A++    + +  +++ELTR  I      G+      H   + + L  I    D
Sbjct: 367 GIVLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDAAHVKDMLACLRFIENPRD 426

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            +A   ++   L     P         A + V   G   +                    
Sbjct: 427 RIAGFRVLH--LIPGIGPASAQRLLDAAGDNVDPIGALCAQPAPARAGEDWTAFIRTLEQ 484

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
             +  W + +          L                 +    G  S   +    
Sbjct: 485 LRISDWPADIERVRHWYQPHLERVHEDAEMRSADLLQLEQIASGYPSRERFLTEL 539


>gi|307578540|gb|ADN62509.1| exodeoxyribonuclease V beta chain [Xylella fastidiosa subsp.
            fastidiosa GB514]
          Length = 1243

 Score = 53.8 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 84/819 (10%), Positives = 197/819 (24%), Gaps = 92/819 (11%)

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            + + + +  +  +    +++AL+R+  +          ++     +  A  R+   V   
Sbjct: 393  QTYDDLIQRVAQALDGPHRLALVRSLRQQ-----YRMALVDEFQDTDVAQWRIFHHVFGD 447

Query: 253  PNGAI-------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
               A        +    D       +      +    +     +   + +       L  
Sbjct: 448  TEHAHTADLTPALFLIGDPKQAIYGFRGGDVHTYLAAAVRAERAPPLERNFRSRPLLLRA 507

Query: 306  KREDVKRLGNVS------------NEMYGRSMVISKSFLPPDTSDMRNTDIL-------- 345
                  + G+ +               + R   +S + +P     +              
Sbjct: 508  IEALYTQAGDAAFLTPGIAFHPVQPGAHCRDTDLSNAGVPAPALQVWQAPPPLDSTAKGK 567

Query: 346  -ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
             +    +  +     A + A ++         AL           A++      A  ++ 
Sbjct: 568  PKPWNADAARALCTDACVHAIHQWLADAQTGRALLDGRPVGAGDIAVLVRSHREATLMQQ 627

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK-- 462
             L R GI    +    L TT  ++   +LL A+    D   + T +   L          
Sbjct: 628  ALARAGIPAVAAGKRSLLTTDEANEALALLLALLHSADEGRLRTALSTVLVGLTAETIAT 687

Query: 463  -YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                   +          +          L+ D  A             R      +L  
Sbjct: 688  FDHDSVASRHWQRQALHWRERLHSGGPLGLLTDLCALHAARLLSLFDGERRLSNYLQLGE 747

Query: 522  LLVDHILQCIT--PLVTYKTNKNSTCGNLSISDWTKL----------------------- 556
            LL    L+ +    LV +   + +   N   +   +L                       
Sbjct: 748  LLQQVHLRALGLHGLVDWLARRIAEAKNDDETQLLRLESDARRVQIVTLHKSKGLEYPLV 807

Query: 557  -TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                           +   +   ++G+ L     K        +    +      +  + 
Sbjct: 808  FLPYVAIGRSHAGPGRYCVVHDAQQGRCLHWCLDKQAPEWQRAETAWKQ-----EQRAEE 862

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       +   +     +      T +   L +       +   F + V  + L   
Sbjct: 863  ARLLYVGLTRAKHALWIATGTFYQTERTALWPLLGDPQAVPAQSGIVFDTAVPPAILPRL 922

Query: 676  TAEKYIGQA-AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            T E+      A   +              +  +     +          G          
Sbjct: 923  TPEQPHSVPPARTAQRGALLSDWWVYSFTQLAHAKAEPAP--------DGGRRIAEPLTG 974

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
            GQ    W         Q      +           +  +  +      +  ++     + 
Sbjct: 975  GQDEPAWP----QDAIQQPLPGSEVPADPRFTGIRFGVALHEVFERTDFLAWSTWRANVP 1030

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                 +    +  RG+ +   + E ++  I   TP + H +  ++       ++P     
Sbjct: 1031 VPATERGVLLQALRGSGY---VAEDVEAGIALLTPLVGHTLTSVLPEGVRLCDVPTTERR 1087

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914
                    I  + ++    +      +       M     G+ +TG  D I     G   
Sbjct: 1088 PEIEFQFVIQATAVDALLALLHDHGLLQQRQSFGMRRRLEGL-MTGMIDLIYRHA-GRWY 1145

Query: 915  ITDYKTGDNP-------KKETAQKLIDPQLSLEAAALKA 946
            + DYK+   P                D Q  +   AL  
Sbjct: 1146 VLDYKSNRLPDYTPAHLSVAMTDSEYDLQALIYTVALHR 1184


>gi|146338472|ref|YP_001203520.1| hypothetical protein BRADO1389 [Bradyrhizobium sp. ORS278]
 gi|146191278|emb|CAL75283.1| hypothetical protein; partial homology to DNA segregation ATPase
           FtsK/SpoIIIE and related proteins [Bradyrhizobium sp.
           ORS278]
          Length = 625

 Score = 53.8 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 60/200 (30%), Gaps = 26/200 (13%)

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDF-IPHFKKDPDRTDRGTLFHNIITELIKKRI 824
              + + +E+   + DP    AR +         F         G  FH  + +L+    
Sbjct: 2   AHHSITATELTFAVLDP-DWRARWLRGEKPSTKSFAPVGTVRAMGVTFHKEVEKLVGWLT 60

Query: 825 NKNTPEINHLMK---QIIDSHFE------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
            + +      +     ++D  +        + L          +F +    F      ++
Sbjct: 61  ARGSLRAASRIDTVDALVDHLWANSLQALTDKLFEAGRGEDAAVFTERMRRFCARLIALR 120

Query: 876 SSIEK--------IFVNI---PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924
           +            +          + + +  + + G  D I +     +++ DYK     
Sbjct: 121 ARTRHFENWQDVFVGAEQNLARIPVPVGNTVVEIRGRVDAIRIHPEQHLEVVDYK----L 176

Query: 925 KKETAQKLIDPQLSLEAAAL 944
            +   QK    QLS+ A  L
Sbjct: 177 SQGARQKADLVQLSIYAHLL 196


>gi|269798726|ref|YP_003312626.1| recombination helicase AddA [Veillonella parvula DSM 2008]
 gi|269095355|gb|ACZ25346.1| recombination helicase AddA [Veillonella parvula DSM 2008]
          Length = 1288

 Score = 53.8 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 19/165 (11%)

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
            K   +   +        GTL H  +  L   +  +        + + +D+   K      
Sbjct: 1110 KPQALQSKEDVLTGAQWGTLMHEAMQWLPLVKYTQ------ASLTKELDALVAKGTFTEE 1163

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH----------LTGF 901
               +       +   F     K   + ++I   +P  M  E   ++          L G 
Sbjct: 1164 ERNLLSD--TSLYKFFSSDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGENLFLQGI 1221

Query: 902  ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
             D     +SG   + DYKT      E   K    Q+ L   AL+ 
Sbjct: 1222 IDTAFE-ESGEWVLVDYKTDRVTSGEDLIKRYKIQMDLYKEALQR 1265


>gi|148239844|ref|YP_001225231.1| exodeoxyribonuclease V beta chain [Synechococcus sp. WH 7803]
 gi|147848383|emb|CAK23934.1| Exodeoxyribonuclease V beta chain [Synechococcus sp. WH 7803]
          Length = 1229

 Score = 53.8 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 75/759 (9%), Positives = 171/759 (22%), Gaps = 48/759 (6%)

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
            ++  L  LN + P   Q  +         +      +I     + P    L+       +
Sbjct: 383  FSGLLDALNPTDPSRSQAWITAL------RERYKVALIDEFQDTDPLQWNLLHQCFASSD 436

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
              ++L   D       +    +  T  T+              +    L      +   G
Sbjct: 437  -HLLLMVGDPKQAIYRFRG-GDLQTYKTARAQVDRIDDLLDNRRTTPPLMEAMNHLMSPG 494

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
               +E+   ++    S  P           +    P+          +EA      A  +
Sbjct: 495  LKHSELSVPAVSAKASCTPLTLPPETAPLQILAFNPDDADGSRSRTDLEATIPCFAADLL 554

Query: 375  AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
               L            ++ +    A  ++ +L++ G+   + +   + ++  +  L   L
Sbjct: 555  LQILGNDASLTPADFCILVSRHRQAEAIRDQLSKVGLPSRLISPGDVLSSQGAGELQWFL 614

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYL------------------SRAKNALELVAL 476
            + + +  D   +  L    L ++                                 +  L
Sbjct: 615  DGLARPADNERLRRLAAGALMQWPAHTLEACEQTGQLDLFAAKLQTLAEALPRLGLMGCL 674

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                    + DL           +    V     R        A  L    L     +  
Sbjct: 675  AQLLEGETLADLSIRGRLLGDLLQCARLVQDAMHRQGLNAAGGADWLRRQRLHPPDNVPD 734

Query: 537  YKTNKNSTCGNLSISDWTKLTVTC------LQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
             +   +    +         +            +          LW    G    S    
Sbjct: 735  QRQPYSDLAASAVAVVTVHRSKGLQYPVVICPYLWEAPSPGKGPLWRLPAGDPTGSWRVA 794

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +       +A A           +             L +    E+              
Sbjct: 795  LNPHWGSGQAAACADALDCMAEAERLAYVALTRAERHLVLFSAGEANPSGNPLDPWLSAL 854

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----AHDFEMANGTRHLIYTRSLRE 705
                  + + +   S             + +  A     A D      +       +   
Sbjct: 855  ADGNHPHISLHHPRSPAAHQRWTPPRQNQTLQCAPVPKGALDRSWGRSSYSAWIASASNH 914

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
            +         L+    +       +L++          +       P     + FP   +
Sbjct: 915  HPSKRSNPHELEEGRDVDAGTDTSSLREPAVGLSSDVERELGDALPPRNGALRTFPRGAS 974

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
                      +   + P    A + L    +     D    D      + I+ L++    
Sbjct: 975  AGDCLHRILEQLPFDQPVEQPANQELVARELSRSGLDLSLQD---DVLSAISTLLRSPFG 1031

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
                ++            E     P            ++ +F    ++   S     +  
Sbjct: 1032 GPLGQLRLADLHSGRRLHELSFDLPVAHAGSAVRASTLARAFRCDPKQRFGSDYAAQLE- 1090

Query: 886  PAKMAIESIGIHLTGFADRIDLLKSG----FVDITDYKT 920
               + I S G  LTG  D +             + D+K+
Sbjct: 1091 --TLDIHSRGF-LTGSIDLVFTDGDDLSTARWWVADWKS 1126


>gi|307323119|ref|ZP_07602329.1| 6-deoxyerythronolide-B synthase., 6-methylsalicylic acid synthase
            [Streptomyces violaceusniger Tu 4113]
 gi|306890608|gb|EFN21584.1| 6-deoxyerythronolide-B synthase., 6-methylsalicylic acid synthase
            [Streptomyces violaceusniger Tu 4113]
          Length = 4810

 Score = 53.8 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/707 (8%), Positives = 140/707 (19%), Gaps = 40/707 (5%)

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
            RA+            +          T      +     G   L      + T       
Sbjct: 4088 RADTNANGHDPAEARLWDAIEELDVDTLTSTLQLEKDSPGVDALLPALPVLSTWRRRHRE 4147

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
              + +       +   P  + A  L   +L +    ++    V           +   L 
Sbjct: 4148 RSTIDSWRYRVAWRQLPDPATAPTLSGTWLLLVPSGLEDHPAVHAAAQALDAHGAAHELL 4207

Query: 334  PDTSDMRNTDILENKIPNIQKC------FSDVALIEADNEREEAISIAIALRMSLDENKK 387
                     D L   + ++          S +AL +  +    A+ + +A   +L +   
Sbjct: 4208 SVDGAEARRDALAPLVSHLPDGSTPEGILSLLALDQTPHPDHPAVPLGLAATAALVQALS 4267

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGI-------PLSTTLHSSILTSLLNAIFKL 440
            ++AL+     + +     +    +     A I        L        L  L   +   
Sbjct: 4268 QTALVAPLWCVTQGAVAAVATDPLPHPHQAQIWGMGRVAALEHPHLWGGLIDLPAVVDAR 4327

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV------ALRGNKNSYDIMDLKSLVLD 494
                  A LV                 +            A R    +        L   
Sbjct: 4328 TPARIAAVLVPGQPEDQVAIRSTALARRLERAACPDTAPTAWRPTGTTLITGGTGGLGAH 4387

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD-W 553
                   +          S  D   A  L   +    T +     + +       + D  
Sbjct: 4388 VARWLARHDAPHLHLISRSGPDAPGATQLAQELTTLGTTVTITACDASDRTALQHLLDTI 4447

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
                               P    +  G         +  T        ++    +  L 
Sbjct: 4448 PTAHPLTAVIHAAGIAENTPLAEVDLPGIEAVLRPKALAATLLHELTEDLDLSAFV--LF 4505

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR---VMQS 670
                      +  +          L               W   +               
Sbjct: 4506 SSGAAAWGGSRQPSYAAANAYLDALAEHRRTRGLPATSLAWAPWSDAGMAADEAVVEYYR 4565

Query: 671  DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE----NNIPTIASRWLQRLLVLGGTD 726
               ++  +  +  A+    + +G   +       E           S  L  L       
Sbjct: 4566 RRGMRPLDTDLAIASLQHSLDHGDTTVTIADIDWEKFPAGFTAQRPSPLLSDLAAAASPS 4625

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                            R+L   T    ++         A       +        P+   
Sbjct: 4626 ADTAPDDAVAVSSSLQRQLATGTPAQQHQLLLHHIQTHAAAILGHPTIDAIPPAQPFQEL 4685

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLF------HNIITELIKKRINKNTPEINHLMKQIID 840
                L      H        D              + + +++R+ +        +   +D
Sbjct: 4686 GFDSLTAVEFGHRLSAATGLDLPPTLVFDHPTPKELADFLRERLVEGELTSEGHLLSELD 4745

Query: 841  SHFE---KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                      +              +   + + E + + S     + 
Sbjct: 4746 RWDAVSAPSGVDEAARRRITGRLRLLLAKWSDTERETERSAAHSELE 4792


>gi|28199529|ref|NP_779843.1| exodeoxyribonuclease V beta chain [Xylella fastidiosa Temecula1]
 gi|182682264|ref|YP_001830424.1| UvrD/REP helicase [Xylella fastidiosa M23]
 gi|28057644|gb|AAO29492.1| exodeoxyribonuclease V beta chain [Xylella fastidiosa Temecula1]
 gi|182632374|gb|ACB93150.1| UvrD/REP helicase [Xylella fastidiosa M23]
          Length = 1243

 Score = 53.8 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 84/819 (10%), Positives = 197/819 (24%), Gaps = 92/819 (11%)

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            + + + +  +  +    +++AL+R+  +          ++     +  A  R+   V   
Sbjct: 393  QTYDDLIQRVAQALDGPHRLALVRSLRQQ-----YRMALVDEFQDTDVAQWRIFHHVFGD 447

Query: 253  PNGAI-------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
               A        +    D       +      +    ++    +   + +       L  
Sbjct: 448  TEHAHTADLTPALFLIGDPKQAIYGFRGGDVHTYLAAAARAERAPPLERNFRSRPLLLRA 507

Query: 306  KREDVKRLGNVS------------NEMYGRSMVISKSFLPPDTSDMRNTDIL-------- 345
                  + G+ +               + R   +S + +P     +              
Sbjct: 508  IEALYTQAGDAAFLTPGIAFHPVQPGTHCRDTDLSNAGVPAPALQVWQAPPPLDSTAKGK 567

Query: 346  -ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
             +    +  +     A + A ++         AL           A++      A  ++ 
Sbjct: 568  PKPWNADAARALCTDACVHAIHQWLADAQTGRALLDGRPVGAGDIAVLVRSHREATLMQQ 627

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK-- 462
             L R GI    +    L TT  ++   +LL A+    D   + T +   L          
Sbjct: 628  ALARAGIPAVAAGKRSLLTTDEANEALALLLALLHSADEGRLRTALSTVLVGLTAETIAT 687

Query: 463  -YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                   +          +          L+ D  A             R      +L  
Sbjct: 688  FDHDSVASRHWQRQALHWRERLHSGGPLGLLTDLCALHAARLLSLFDGERRLSNYLQLGE 747

Query: 522  LLVDHILQCIT--PLVTYKTNKNSTCGNLSISDWTKL----------------------- 556
            LL    L+ +    LV +   + +   N   +   +L                       
Sbjct: 748  LLQQVHLRALGLHGLVDWLARRIAEAKNDDETQLLRLESDARRVQIVTLHKSKGLEYPLV 807

Query: 557  -TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                           +   +   ++G+ L     K        +    +      +  + 
Sbjct: 808  FLPYVAIGRSHAGPGRYCVVHDAQQGRCLHWCLDKQAPEWQRAETAWKQ-----EQRAEE 862

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       +   +     +      T +   L +           F + V  + L   
Sbjct: 863  ARLLYVGLTRAKHALWIATGTFYQTERTALWPLLGDPQAVPAQPGIVFDTAVPPAILPRL 922

Query: 676  TAEKYIGQA-AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            T E+      A   +              +  +     +          G          
Sbjct: 923  TPEQPHSVPPARTAQRGALLSDWWVYSFTQLAHAKAEPAP--------DGGRRIAEPLTG 974

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
            GQ    W         Q      +           +  +  +      +  ++     + 
Sbjct: 975  GQDEPAWP----QDAIQQPLPGSEVPADPRFTGIRFGVALHEVFERTDFLAWSTWRANVP 1030

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                 +    +  RG+ +   + E ++  I   TP + H +  ++       ++P     
Sbjct: 1031 VPATERGVLLQALRGSGY---VAEDVEAGIALLTPLVGHTLTSVLPEGVRLCDVPTTERR 1087

Query: 855  IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914
                    I  + ++    +      +       M     G+ +TG  D I     G   
Sbjct: 1088 PEIEFQFVIQATAVDALLALLHDHGLLQQRQSFGMRRRLEGL-MTGMIDLIYRHA-GRWY 1145

Query: 915  ITDYKTGDNP-------KKETAQKLIDPQLSLEAAALKA 946
            + DYK+   P                D Q  +   AL  
Sbjct: 1146 VLDYKSNRLPDYTPAHLSVAMTDSEYDLQALIYTVALHR 1184


>gi|149921796|ref|ZP_01910242.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
 gi|149817357|gb|EDM76831.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
          Length = 683

 Score = 53.8 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 67/706 (9%), Positives = 157/706 (22%), Gaps = 101/706 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            TL                + +   T RA +E+      +            +   V   
Sbjct: 48  RTLTYRVAKLVAGGCQPERIMLVTFTNRAAREMVHRVESLLTIDMRRS-ASGTFHHVGNR 106

Query: 88  KFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                            +        +  ++      +    +         +    A  
Sbjct: 107 ILRRYGEAVGLGPDFGILDPEDARDLMGSVVSELGMAVLTSKRFPDARVLTKIASQAAGM 166

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIASKYWTERLVELNA 204
           +     +  +I+   T               +                 YW E L +   
Sbjct: 167 LG---TIPAVIERRFTRFLDLVAPIDKVLADFKERKRRLNMVDFDDLLSYWLELLRDPKH 223

Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
           +S                  G    +++            ++  +A        +   D 
Sbjct: 224 ASVAEQLR------------GQWDHMLVDEYQDINVLQGAIIDEMARDHGSLTCV--GDD 269

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +                 +             L I      ++ +++N    R+
Sbjct: 270 AQSIYSFRGADFSQIYDFRIRHKEAQVLP---------LTINYRSTPQILSLANRSIARN 320

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
                             +    ++  ++K  +  ALI   +  ++   +A  +     E
Sbjct: 321 R-----------------EQHPKELTAVRKPGATPALIPLRDVIQQGELVAQRVLELHHE 363

Query: 385 N---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                +K A++  +   +  +++ELTR  I   + +G+      H   + + L A     
Sbjct: 364 QSLPLRKMAVLYRNHAHSLELQVELTRRNIPFAVRSGVRFFEQRHIKDVVAYLRARENPR 423

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
           D +A   L++          + ++           R              VL   + Q  
Sbjct: 424 DALAWLRLLRLWPGIGNRTAERVASVLAGEFDAFGRRLPVPAGPPAPVPEVLAAESKQAK 483

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                          K+  V L     + +               +   +D+ + +    
Sbjct: 484 GRA------------KDALVTLAKLFDRLLEAGGRNPGRAIEIIVHEHYADYAERSFENA 531

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                D           E+     S  +                   +   I  E V   
Sbjct: 532 DARKEDLDNLANYAGRWEDATEFLSELA-------------------LIEGISAENVVMG 572

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
            E    L +    +++ L +  + +                 +     S   L+   +  
Sbjct: 573 DEPDDKLVLSTIHQAKGLEWPVVFVL--------------WLVDGRFPSSQALRANAELE 618

Query: 682 GQAAHDFEMANGTR-HLIYTRS-----LRENNIPTIASRWLQRLLV 721
            +    +         L           R        SR+L  L  
Sbjct: 619 EERRLFYVATTRAEDDLYLLYPTIEEGRRGPTTVLRPSRFLTELDH 664


>gi|219683031|ref|YP_002469414.1| ATP-dependent exoDNAse (Exonuclease V) beta subunit
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|219620681|gb|ACL28838.1| putative ATP-dependent exoDNAse (Exonuclease V) beta subunit
           [Bifidobacterium animalis subsp. lactis AD011]
          Length = 905

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 6/58 (10%)

Query: 892 ESIGIHLTGFADRIDLL----KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
           +   + + G  DR++            + DYKTG++          D QL      L 
Sbjct: 696 DGQEVQINGRIDRLERRRFDNGDEHWRVVDYKTGNSFSPAEQFS--DLQLVCYQLGLA 751


>gi|325066920|ref|ZP_08125593.1| hypothetical protein AoriK_03833 [Actinomyces oris K20]
          Length = 217

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 18/76 (23%)

Query: 895 GIHLTGFADRIDLLK---------------SGFVDITDYKTGDNPKKETAQKLIDPQLSL 939
            + ++G  DR++ L                +G V + D KTG     +  Q+   PQL+ 
Sbjct: 38  PVTISGRIDRLEHLGGLSEGESENSAGPDRNGTVRVIDLKTGQR-VPKDVQRH--PQLAT 94

Query: 940 EAAALKAGSFSQIDCR 955
              AL +     +   
Sbjct: 95  YRLALSSQGLDVVGGA 110


>gi|239993279|ref|ZP_04713803.1| exodeoxyribonuclease V, gamma subunit [Alteromonas macleodii ATCC
           27126]
          Length = 429

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/383 (11%), Positives = 92/383 (24%), Gaps = 32/383 (8%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           TI V +      +  +     G    I   LP       V     TA  +L  +  P  S
Sbjct: 33  TILVESPGMQHWVSMQLATEHGVAMNIDYPLP-------VRFMWNTARTVLGQDKVPKQS 85

Query: 105 NIQRLLELARLILIWRNKLPDIIKDL-----YPESPLSLPISPANAIWLAKNLADIIDII 159
             +R +   R+  I ++      +       Y ++  S        + LA  LAD+ +  
Sbjct: 86  PYRREVLTWRIDNILQDGSLMSAEAFEQVNRYWQNAGSEQEQGLQRLQLATALADVYEQY 145

Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFL-KIASKYWTERLVELNASSPVGYQIALMRAE 218
                 W                +    + +I  K        L+  +            
Sbjct: 146 LLYRPDWLFKWEANERAVFDDMEIWQSEIWRILVKEQPLHPARLHQMTLEALGALEAGHL 205

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                      +I+       P        +A H +  I       +      ++  +  
Sbjct: 206 PSEPTNKLPDRVIVFAINTMAPQLIAFFDALAQHIDIHIFHLNPSVNYWGEAKSSSEQAK 265

Query: 279 TNITSSNTTYSTHPQ------------YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                    +    Q              L  LL  LD          +           
Sbjct: 266 LLRLEGLKKWMEEDQSNPLLGNLGKQGRELFNLLTELDTFEISAFDSPDFEETNDNAGSD 325

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN- 385
            ++  L    +D+      +    ++++    V ++   +   E   +   L   L ++ 
Sbjct: 326 NARGLLEYIHNDILQAAQPKPLAHDLREKDDSVTIMCTHSALREVQVLHDHLLHWLSQDK 385

Query: 386 ---KKKSALITADRNLARRVKLE 405
                   ++             
Sbjct: 386 TRTPSDILVMCPAIENYAPFVDA 408


>gi|152984144|ref|YP_001350187.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PA7]
 gi|150959302|gb|ABR81327.1| exodeoxyribonuclease V, beta subunit [Pseudomonas aeruginosa PA7]
          Length = 1244

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 81/908 (8%), Positives = 197/908 (21%), Gaps = 119/908 (13%)

Query: 160  ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW---TERLVELNASSPVGYQIALMR 216
                      H  +         L    L    +      +R  E+     +      ++
Sbjct: 323  ALRAIDAWAAHQEERPDIAPH--LLLHALGEVGRELEVEKQRRAEIGFDDLLTRLDRALQ 380

Query: 217  ----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG--------AIVLPGLDC 264
                     L++      +I     + P   R+   +                +    D 
Sbjct: 381  GPGGERLAQLIREQFPVALIDEFQDTDPVQYRIFERIYRIAADPAGPQARETGLFMIGDP 440

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                  +      +       T    +      +    +                   R 
Sbjct: 441  KQAIYAFRGADIHTYLRAREATRGRHYTLGRNFRSTAAMVAAANRCFAFAEEHPRGAFRF 500

Query: 325  MV--------ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                                  +         +           L  A   +E A   A 
Sbjct: 501  AREGVENPLPFHAVDAQGRAERLSIDGAEAPAMTFWCLDAEAGVLGSAAYRQEMAERSAS 560

Query: 377  ALRMSL------------------DENKKKSALITADRNLARRVKLELT-RFGINIDISA 417
            A+R  L                         A++   R  A  ++  L  R   ++ +S 
Sbjct: 561  AIRRWLSLADLGRAGFADEQGGWRALRPADIAILVRGRAEAEAIRSALAARRLASVYLSD 620

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
               +  +  ++ L   L A         +   +        +                + 
Sbjct: 621  RDSVFDSQEAADLLHWLRACADPGADTLLRVALASRSLHLDWATLERLNQDELFWERMVL 680

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQCITPLVT 536
              ++   +   + ++        +             E      + L + + +    L  
Sbjct: 681  RFRDYRRLWQTQGVLPMLRRLLADFELPARLLRHTDGERSLTNLLHLAEWLQRAAVELDG 740

Query: 537  YKTNKNSTCGNL--SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                       L    S+      +    + +    K   L +          + ++   
Sbjct: 741  EHALVRHLAEQLQSPGSEEILRLESDADLIKVVTIHKSKGLEYPLVLLPFICSWKELDGN 800

Query: 595  GSCIKAN-----AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                 +        + +++  R         +         +  L   L      +  G+
Sbjct: 801  SGAPASFHEDGIPGQVVELARRKEQAARAYEQANDERLGEDMRLLYVALTRARHSVWLGI 860

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
               V   + +       +                +                  + E   P
Sbjct: 861  APLVAGNSRSPELHKGAMGYLLAG------GAAISGEGLASCLAALRGECAGIVVEPAPP 914

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCY--------LDWTRKLDYTTKQPHYKRPKPFP 761
              A  ++       G         R + +        L  +  L+        +  +P  
Sbjct: 915  ADAEPYVMGRGEALGQARETCRSSREKWWVASYSGLQLQASSGLEDDEAVAVAESQEPIS 974

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE--- 818
              EA  +    S  +     P    A R           + P     GT  H ++     
Sbjct: 975  AEEATFQEEGRSAEQ---PPPAVASAMR-------DDLHRFPRGPAPGTFLHGLLEWAGR 1024

Query: 819  ----------------LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH- 861
                            + ++   +   +    +   ++ +  +    P  +     L   
Sbjct: 1025 EGFEAARADAPRRRELIARRCELRGWKDWAEPLDLWLEQYLAEPLRWPGGEASLAGLLAY 1084

Query: 862  --KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL-----TGFADRIDLLKSGFVD 914
              ++   F  H+ + ++    +  +     A  ++   L      GF D +   + G   
Sbjct: 1085 QVEMEFWFASHQVQAEAIDALVRRHTLGGAARPALAPTLLNGMFKGFVDLVFEHQ-GRFY 1143

Query: 915  ITDYKTG-----------DNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVAN 959
            + DYK+            +       +   D Q  L   AL     +++      R V  
Sbjct: 1144 VADYKSNWLGADDGAYSPEAMAAAVLENRYDLQYVLYLLALHRQLQARLPDYDYDRHVGG 1203

Query: 960  LFYIRLKQ 967
              Y+ L+ 
Sbjct: 1204 AVYLFLRG 1211


>gi|331697125|ref|YP_004333364.1| RecB family exonuclease [Pseudonocardia dioxanivorans CB1190]
 gi|326951814|gb|AEA25511.1| RecB family exonuclease [Pseudonocardia dioxanivorans CB1190]
          Length = 371

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 82/328 (25%), Gaps = 82/328 (25%)

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                             P  P   +    S S        P     R I +L  +P   
Sbjct: 7   PAAPRTRVPAPRRDAAAAPGQPRPRRRPALSPSRAVDFRTCPLLYRYRAIDRLPELPGR- 65

Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM------------------------- 835
                  RGTL H ++  L      + T E    M                         
Sbjct: 66  ----PQVRGTLVHAVLERLFALPAAERTREAATAMVGPAWVDLVISSPGLADALFATPDP 121

Query: 836 -------------------KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
                              +Q+ +   ++          W    H +  ++   E+    
Sbjct: 122 ASVDPAAGGEPLAREPDGSEQVAEQGQDRPVPADAGFARWLASVHDLVEAYFVLEDPAAV 181

Query: 877 SIEKIFVNIPAKMAIESIGIHLTG---------------------------FADRIDLLK 909
             E + + +  ++    +    TG                           F DRID+L 
Sbjct: 182 EAESVELLVETELGPALLPGRETGPETGPGTGPDAGSGAERGPGGGLLLRGFVDRIDVLP 241

Query: 910 SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969
            G + + DYKTG  P +E+ +     QL   A AL      Q+       L  + L    
Sbjct: 242 GGGLRVVDYKTGRIP-QESGEAAAMFQLKFYALAL-----LQLRGTVPDELRLLYLPAGQ 295

Query: 970 KIDCITNDKKKYSADELSEKSLKNLIEI 997
            +    +  +      + +     +   
Sbjct: 296 WLSYSPDADELRRFARVLDALWTAIRTA 323


>gi|284992611|ref|YP_003411165.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
 gi|284065856|gb|ADB76794.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
          Length = 674

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 67/650 (10%), Positives = 138/650 (21%), Gaps = 74/650 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T RA  ELRS    +           ++       +             P   
Sbjct: 69  QVLAVTFTARAAGELRSRLAGLGVGGV----QARTFHAAAMRQLRYFAPRVLGGPMP--- 121

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                    L+      +          +  +     A+ I  AK      D        
Sbjct: 122 --------ELVENKLRLVAAAASRSRLSTDRTSLRDLASEIEWAKTTLATPDDY------ 167

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
                A   E       +A          +        A       +    A  EH    
Sbjct: 168 PARAQAAGREPPFEPAAVA-----RVYASYESAKQRDGALDFEDLLLVTAFALEEHPDVA 222

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +G     ++       P   RL+         A V    D +     +         
Sbjct: 223 RQVRGQYRHFVVDEYQDVNPLQQRLLDAW--LGGRADVCVVGDPNQTIYSFTGADPDYLL 280

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV--ISKSFLPPDTSD 338
             +       +P   + KL        + V     +  +   R  +  +       +   
Sbjct: 281 GFADR-----YPDAEVVKLERDYRSTPQVVALANKLIGQAPPRKGLPGLRLLGQRAEGPA 335

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
            R ++  +          +  AL++A     E                   A++      
Sbjct: 336 PRFSEHPDEPTEAAAVAQACRALVDAGTPAAE------------------IAVLFRINAQ 377

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSS-ILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
           +   +  L   G+   +  G            +  L  A     +  A+   V+      
Sbjct: 378 SEVYENALAAVGVPYVLRGGERFFERPEVREAVLLLRGAAAGGTEPGALVPTVR------ 431

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                 +  +   +E     G         L +LV   +     +  +           +
Sbjct: 432 -----DVLASTGWVEHRPPPGGAARDRWQSLAALVDLAVDLVAEDPTLDLAGFVSHLAAR 486

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL-PNLW 576
             A          +  +   K  +      + + D        L      E  +    + 
Sbjct: 487 ADAQHAPTVQGVTLASMHAAKGLEWDAVFVVGLVDGVLPISQSLSRPDAVEEERRLLYVA 546

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                + L+  +S     G         ++D +          P+  +     +L     
Sbjct: 547 VTRAREQLNLSWSLARNPGGRRSRPRSRFLDGLVPGSTPTAAPPQRRQKRAKVVLEGEAG 606

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            L           +E     +       +      +           AA 
Sbjct: 607 ELFERLRAW---RSEAAASASVPAYVVFTDATLQAIAETRPASLRELAAL 653


>gi|302343265|ref|YP_003807794.1| hypothetical protein Deba_1835 [Desulfarculus baarsii DSM 2075]
 gi|301639878|gb|ADK85200.1| conserved hypothetical protein [Desulfarculus baarsii DSM 2075]
          Length = 338

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 84/322 (26%), Gaps = 69/322 (21%)

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
             ++  T ++S  +   N   A   R I +L  +            G++ H+ +     +R
Sbjct: 1    MSELMTTTYSMWRLFRNCRMACKWRYIDELVPLE----RDPNLAFGSVIHDCLECWHGER 56

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
                       +   ID  +       H    W HL   +  ++ EH        E + +
Sbjct: 57   -------DLAKVLDHIDRTYPNRAQDDHQQADW-HLARAMMSAYAEHYPA--EEFEVVAL 106

Query: 884  NIPAKMAI-------ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI-DP 935
                +  I        S    L G  D I + + G   + ++KT         ++L  D 
Sbjct: 107  EKTFEGPIVNPATGATSRSFILAGKVDGI-VRQDGQYFLLEHKTASQIDASYLERLWTDF 165

Query: 936  QLSLEAAALK---------------------AGSFSQIDCRKVANLFYIRLKQKFKIDCI 974
            Q+ L A  L+                      G        +      I   +  K    
Sbjct: 166  QIILYAWYLEQTLGITVSGIIYNVLVKAKLRQGKGETEAEFEARRAELIAKSKTGKSSAK 225

Query: 975  TNDKKKYSA-----------------------DELSEKSLKNLIEIVTLLQNGEQ--PFI 1009
                +                            +  E+    L E+   + +  +   F 
Sbjct: 226  RKLPEDDDTFQQRLQEKYLEPGMFHREVLYISRDQLEELRAELWELSKAMLDARRRDTFY 285

Query: 1010 SHLRLSEKSNIQSEYDHLARVA 1031
             +     +      Y  L R  
Sbjct: 286  RNTSYCFQYGRPCAYFQLCRSG 307


>gi|330879358|gb|EGH13507.1| UvrD/REP helicase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 564

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 71/269 (26%), Gaps = 17/269 (6%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS--EFIEITGKKSTILPIIKSLGDVV 85
            TLV+      L+    +++ +   + +A  EL             +     I +     
Sbjct: 227 RTLVQRVEKLILDGEDPSAILVLTFSNKAASELSERIALSNPLAAAAMW---IGTFHAFG 283

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
            +             PP   +   LE   L+     +L         + P        +A
Sbjct: 284 LDIIRRF--HQILKLPPEPRLIDRLEGIELLEAEIPRLSLQHYRNLWD-PTLDLNDMLSA 340

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
           I  AK+  + I+  E              +   +        +    + +   + E    
Sbjct: 341 ISRAKD--ESIEATEYIRLAESMTRNAGGDSAALLRAEKCLEVASVYEAYERLMRERKLI 398

Query: 206 SPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                     ++    AE    ++     +++        ++ RL+  +     G  +  
Sbjct: 399 DFGDLISYPVRLVETHAEVRGALRRRHKHVLVDEYQDVNRSSVRLLKAIVG--GGENLWV 456

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYS 289
             D       +   +  +    S +   +
Sbjct: 457 VGDARQSIYRFRGASASNMAHFSEDFPGA 485


>gi|320161380|ref|YP_004174604.1| hypothetical protein ANT_19780 [Anaerolinea thermophila UNI-1]
 gi|319995233|dbj|BAJ64004.1| hypothetical protein ANT_19780 [Anaerolinea thermophila UNI-1]
          Length = 281

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/265 (10%), Positives = 75/265 (28%), Gaps = 39/265 (14%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII-TELIKKRINKNT 828
            +S   ++   + P   + R + +L +     +  +  +R    H ++  +  +       
Sbjct: 17   FSQHSLQDYADCPRRFWLRYLEQLAWPSPPVEPLEEYER----HRLLGEQFHRLAHQAFL 72

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                +L++Q+ +           +   W   F ++  +    E K           +   
Sbjct: 73   GIDLNLLRQLAE--------SDALLSSWWANFMRLFPAVNTGERK-----------VEFA 113

Query: 889  MAIESIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            +++      L    D I          I D+KTG+     +       Q  +    L   
Sbjct: 114  LSVPVKQYRLFARFDLIQKHTAPLRWVIWDWKTGEKTSTASRLSQRW-QTRVYRYVLVEA 172

Query: 948  SFSQIDCRKVA----NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
              +             + Y       K   +   ++++  D       +++++ +     
Sbjct: 173  GQTIFGQNAPQPQDVEMVYWFAAAPEKSVRLPYSQEQFEKD------REDILQWI-EWIE 225

Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLA 1028
             +  F       EK      Y    
Sbjct: 226  KDDVFP--PTTEEKRCRFCVYRSFC 248


>gi|311107647|ref|YP_003980500.1| UvrD/Rep helicase family protein 1 [Achromobacter xylosoxidans A8]
 gi|310762336|gb|ADP17785.1| UvrD/Rep helicase family protein 1 [Achromobacter xylosoxidans A8]
          Length = 707

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/562 (11%), Positives = 136/562 (24%), Gaps = 61/562 (10%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAI----QELRSEFIEITGKKST----ILPIIKS 80
           TL     +  LN      + +   ++RA     + + S    +   ++T     LP   +
Sbjct: 62  TLAHRVAHLILNGADPQRMLLLTFSRRAALEMERRVGSVLQRVMRLRATQQAPSLPWAGT 121

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
              +                       + + L+    I      D    +          
Sbjct: 122 FHAIGARLLRDCA--------------QRIGLSEAFTIHDR--GDAEDLMGMVRHELGLS 165

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
           S  +   L      I   +   +    D+          W     D LK   + +     
Sbjct: 166 STKSRFPLKGTCLAIYSRVVNSQTPVADVLKTAF----PWCAQWEDELKNLFRAYVAAKQ 221

Query: 201 ELNASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           +          +              +      +++     +    + ++  +   P+G 
Sbjct: 222 DQQVLDYDDLLLYWAEMMGDPGIAADVGARFDHVLVDEYQDTNRLQSAILMAMK--PDGR 279

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            +    D       +   T ++              Q+     +  LD      + + N 
Sbjct: 280 GLTVVGDDAQSIYSFRAATVRNILDFPG--------QFPTPARVITLDRNYRSTQPILNA 331

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           SN + G   + ++ +     +D +++ + E              L+   +E  +A  +A 
Sbjct: 332 SNAVIG---LATERYAKDLWTDRKSSQLPE--------------LVTVSDEAGQARWVAD 374

Query: 377 ALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +    +     K  A +    + +  ++LELTR  I      G+      H   L SLL
Sbjct: 375 QVLAQREGGATLKSQAALFRTASHSAALELELTRRNIPFVKFGGLRFLEAAHVKDLLSLL 434

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                    MA   + +            L  A +A         +              
Sbjct: 435 RWAENPRGRMAGFRVAQLLPGIGPATAGKLMDAMSASAEPLRALREFKPGAAAQGEWGAF 494

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                        W + +    +     L                      G  +   + 
Sbjct: 495 ADTYAALCDPALKWPADVDLALRWYGAQLERLYDDARVRRADLDQLARIAAGYGTRERFL 554

Query: 555 KLTVTCLQNVCLDEHRKLPNLW 576
                   +   DE        
Sbjct: 555 TELTLDPPDATSDESGAPHRDE 576


>gi|296115456|ref|ZP_06834090.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
 gi|295978029|gb|EFG84773.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
          Length = 700

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/548 (10%), Positives = 139/548 (25%), Gaps = 71/548 (12%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQEL--------RSEFIEITGKKSTILPIIKS 80
           TL     +   +      + +   ++RA  E+        ++   +  G  +  L    +
Sbjct: 55  TLAHRVAHLIASGADPRRILLLTFSRRASVEMTRCVERICKTVLGDKAGPLADALAWAGT 114

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQR-----LLELARLILIWRNKLPDIIKDLYPESP 135
              +       +      ++P  S   R     L+ L R  L +              + 
Sbjct: 115 FHSIGARLLR-EYAQQIGMDPAFSIHDREDSADLMNLIRHDLGFSKTEKRFPGKGTCLAI 173

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
            S  ++      LA  L          E + + L                         +
Sbjct: 174 YSRVVNSGA--PLADVLLKHYPWCAGWEVQLKQL----------------------FAGY 209

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGT----KGPIIIAGSTGSIPATARLMSTVAN 251
                E          +   +  ++ ++          +++     +    A ++  +  
Sbjct: 210 VTAKQEQGVLDYDDLLLCWAQMVSDPVLAADIGGKWDHVLVDEYQDTNRLQADIL--LGM 267

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
            P+G+ +    D       +   T ++     ++      P   +  L       +  + 
Sbjct: 268 KPDGSGLTVVGDDAQSIYAFRAATVRNILDFPASFD----PPARVVTLDRNYRSTKPILD 323

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
               V  E   R            T D+      E K            L+   ++  +A
Sbjct: 324 AANAVIGEAAER-----------FTKDLWTDRASEEKP----------RLVTIWDDTAQA 362

Query: 372 ISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
             IA  +    +     K+ A++    + +  +++ELTR  I      G+    + H   
Sbjct: 363 NYIADRVLEEREAGTPMKQQAVLFRASHHSGTLEVELTRRNIPFVKFGGLKFLDSAHVKD 422

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           + +LL       D +A   +++  L       + +                        +
Sbjct: 423 VLALLRFAQNPRDRIAGFRVLQLLLGVGPSSARRVLDTMGESAHPFEALKDVKAPQRSGE 482

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
                        +H   W   ++         L        T L      +    G  S
Sbjct: 483 VWTGFVNLLTAVGSHQVGWPGEIAAVRYWYEPHLERLHEDASTRLADLVQLEQIAGGYPS 542

Query: 550 ISDWTKLT 557
              +    
Sbjct: 543 REKFLTEL 550


>gi|317403517|gb|EFV84017.1| ATP-dependent DNA helicase [Achromobacter xylosoxidans C54]
          Length = 696

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 64/562 (11%), Positives = 131/562 (23%), Gaps = 61/562 (10%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK--------KSTILPIIKS 80
           TL     +  LN      + +   ++RA QE+      +  +        ++  LP   +
Sbjct: 53  TLAHRVAHLILNGADPQRMLLLTFSRRAAQEMERRVGSVLQRVMNLRGTQQAPSLPWAGT 112

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
              +                       + + L+    I      D    +          
Sbjct: 113 FHAIGARLLRDCA--------------QRIGLSEAFTIHDR--GDAEDLMGMVRHELGLS 156

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
           +  +   L      I   +   +    D+          W     D LK   + +     
Sbjct: 157 ATKSRFPLKGTCLAIYSRVVNSQTPVADVLHGTF----PWCAQWEDELKNLFRAYVAAKQ 212

Query: 201 ELNASSPVGYQIALMRAEAEHLMK----GTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           +          +       +  +          +++     +    A +   +A  P+G 
Sbjct: 213 DQQVLDYDDLLLYWAEMMGDAAIAADVGARFDHVLVDEYQDTNRLQAAI--RLAMKPDGR 270

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            +    D       +   T ++     +        Q+     +  LD      + + N 
Sbjct: 271 GLTVVGDDAQSIYSFRAATVRNILDFPA--------QFPQPARVITLDRNYRSTQPILNA 322

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           SN + G +       L  D    +  +                 L+   +E  +A  +A 
Sbjct: 323 SNAVIGLAAERYAKDLWSDRQSSQLPE-----------------LVTVSDEAGQARWVAD 365

Query: 377 ALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +    +     K  A +    + +  ++LELTR  I      G+      H   L SLL
Sbjct: 366 QVLAQREGGATLKSQAALFRTSSHSAALELELTRRNIPFVKFGGLRFLEAAHVKDLLSLL 425

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                    MA   + +            L  A            +              
Sbjct: 426 RWAENPRGRMAGFRVAQLLPGIGPATAAKLMDAMTQSAEPLRALREFKPGAAAQAEWGAF 485

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                        W + +    +  A  L                      G  S   + 
Sbjct: 486 ADTYAALADPSLRWPADVDLALRWYAGQLERLYDDARVRKTDLDQLARIAAGYPSRERFL 545

Query: 555 KLTVTCLQNVCLDEHRKLPNLW 576
                   +   DE        
Sbjct: 546 TELTLDPPDATSDESGAPSRDE 567


>gi|291006584|ref|ZP_06564557.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 1052

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 68/584 (11%), Positives = 130/584 (22%), Gaps = 100/584 (17%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
                   T+RA +E+      + G  +  L  + +      +                  
Sbjct: 527  ECLAITFTRRAAEEMTERLHALAGPTAAEL-TVATFHSFGLQLLRDHHD----------- 574

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                          +  L              +    A     AK L   +         
Sbjct: 575  --------------KAGLSADFGLADASVQHEVLTEVAGDERAAKALRAELSRARRGGDT 620

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----E 220
             ED  A                   A   +T  L E N        +  +R         
Sbjct: 621  DEDTAA-------------------ALHRYTTALRERNLIDFDDLVVLPVRLLESDDELR 661

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
               +     I +           RL+  +A  P GA +    D       +         
Sbjct: 662  AAYRDRFRWITVDEYQDVDEMQYRLLRQLA--PAGANLTAVGDPDQAIYSFRGADVGFFL 719

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                       PQ  + +L       R  +                              
Sbjct: 720  RF-----QQDWPQAPVVQLTRNYRSGRHILDGAVRAIRPGTLV----------------- 757

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-------DENKK------ 387
                    +P   +    + + EA +E  EA  +A ++   L        ++ +      
Sbjct: 758  ---PDRVLLPAGDRPAQRITVHEATDEHAEAAFVARSIDRLLGGASFHSLDSGRVDGDGH 814

Query: 388  ------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                    A++    + +R V  EL R G+ +   +  PLS       L   L  +    
Sbjct: 815  GGIGFADIAVLYRTDSQSRAVLDELVRCGLPVQKRSHDPLSARPGVDHLMRELALVPARK 874

Query: 442  D--FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                  +       LA      +  +   +A   + +   +   D +      L   A  
Sbjct: 875  GSVPERVRWAADAVLAAMPDAVQEQTAEIHAAAELLMPLAQRCGDDVQRFRRELLLGAEV 934

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                      S L+    +     V  ++ C   L+  +    +   +    +  +    
Sbjct: 935  DALDPRADAISLLTLHAAKGLEFPVVFVVGCEDGLLPLRWPGATPENDDIAEE--RRLFF 992

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                   D             G    +  S  +E         I
Sbjct: 993  VGMTRAQDHLHLTRAARRTRHGTERDTRPSPFLEGLGEDIVERI 1036


>gi|89901667|ref|YP_524138.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
 gi|89346404|gb|ABD70607.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
          Length = 1165

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 82/831 (9%), Positives = 178/831 (21%), Gaps = 132/831 (15%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPII 231
            +    A   +   K +     E         + A +            +  +      ++
Sbjct: 374  YQQRMARLTRALLKEFAALKREHGWVDMNDVERAALVMLSDPVLCGWVQERLDARIKHLL 433

Query: 232  IAGSTGSIPATARLMSTVANHPNGA-------------IVLPGLDCHIPTAIWNTITEKS 278
            I     + P   + + +  +   G               V    D       +     + 
Sbjct: 434  IDEFQDTNPLQWQALKSWLSGYAGTGGGASGGAGATAPRVFIVGDPKQSIYRFRRAEPQV 493

Query: 279  TNITSSNTTYS--------THPQY-----------------------SLAKLLDFLDIKR 307
                 +              H +                                     
Sbjct: 494  FKAAKAFVRDGLNGDLLSCDHTRRNATGVIAVVNAVMTQAVQADGYEGFRAHTTSASELG 553

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
               K       E    +           T+     D L+      ++    +   +A + 
Sbjct: 554  LVCKLPPIARPERLAGAASSGDETEGGGTASAGWRDSLDTPRELPEETLRTLEARQAAHW 613

Query: 368  REEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
              + ++ A                +++  R     ++LEL +  I   I     L     
Sbjct: 614  IAQQLASAETPDTEGRGLQAADVMVLSRKRAGLLPLQLELRKLHIAAQIGEKTNLIDCCE 673

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
               L +LL+ +      +++A ++K PL                 +              
Sbjct: 674  VQDLVALLDVLVSPRHDLSLARVLKSPLFDMTDAALVQLAQAVRAQSQPPADGSW----- 728

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
                L    ++TQ                D+      +  I      L  +     ++  
Sbjct: 729  -FDVLQKSELSTQDGRGLAACLMRWKGWLDQWPPHDALQAIYFDGDVLARFAAAAPASQR 787

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
            +  +++ T L    LQ            +   + G  L+       +    +  +  + +
Sbjct: 788  DAVLANLTALLGMSLQLDGGRFSTPYAFVRALKGGGVLAPAAVN-PQAVRLLTVHGAKGL 846

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
            +    L+       +   +  + I             + L   ++               
Sbjct: 847  EAQVVLLLDTDTPERNADTMGVLI-DWPGEAAWPSKFVFLASESQPPACAVPT------- 898

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
                 L  +  E+   +    +      R  +   S+           W QRL  L    
Sbjct: 899  -----LEAERLERQREELNALYVALTRARRTLAISSIAPYRSAER--SWWQRLSDLAQPA 951

Query: 727  FFDNLKKRGQCYLDWTRKLDYT--TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                         D     D     K+      +              S           
Sbjct: 952  VPAGAAALAAPLPDAVTVADAVFYIKELPLAPVEYRQVAIKSEANLGGSR---------- 1001

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                     D              G   H ++        +          ++       
Sbjct: 1002 -------GGDDANADADALSAR-LGKAMHRLLE-----WGDATPANTAACAREFA----- 1043

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL--TG-- 900
               L P        +  +I                        ++A +   I L   G  
Sbjct: 1044 ---LTPEQGAQAAAMAARILQGEGAWAWDNT------------RLAWQGNEIELLYQGQC 1088

Query: 901  -FADRIDLLKS----GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
               DR+         G   + DYK+   P      +L+  QL    AA++A
Sbjct: 1089 LRLDRLVQRTDAQHAGHWWVLDYKS--APAPHEQAELLA-QLRDYRAAVQA 1136


>gi|71735593|ref|YP_272988.1| exodeoxyribonuclease V subunit beta [Pseudomonas syringae pv.
            phaseolicola 1448A]
 gi|71556146|gb|AAZ35357.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            phaseolicola 1448A]
          Length = 1230

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 114/1051 (10%), Positives = 247/1051 (23%), Gaps = 170/1051 (16%)

Query: 56   AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115
            A+  +R          + +LP ++ L        T +           S  +R   LA L
Sbjct: 182  ALTWVRENLS----GPAALLPRVRGLFGRGRSPLTQEPAELIEA----SLQERRAALAAL 233

Query: 116  ---ILIWRNKLPDIIKDLYPE---------------SPLSLPISPANAIWLAKNLADIID 157
                  W  +L  + +D                       L    A+    A +L     
Sbjct: 234  KGPWAAWAEELYVLCQDAVARKVVDGRKMQERYFKPWFEKLAAWAADDTQEALDLGTGFT 293

Query: 158  IIETEEKK---------------WEDLHALKNEKYGMWWLLAADFLKIASKYWTE---RL 199
             +  E                     L A  +        +     +  S  + E   R 
Sbjct: 294  RLTPEGVAEAWKSDPPSLPAFEAMAQLKAALDSLPKPDAAVLQHAAQWVSARFEEEKRRR 353

Query: 200  VELNASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             E+     +    A + +        L++      +I     + P   R+  ++      
Sbjct: 354  AEMGFDDMLLRLDAALHSAGGERLATLIREQFPVALIDEFQDTDPVQYRIFDSIYRLEGN 413

Query: 256  AI---VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                 +    D       +      +       T    H   +  +    +      V R
Sbjct: 414  DEQTGLFLIGDPKQAIYAFRGADIYTYLRARQATDGRWHTLDTNYRSSHAMVASVNHVFR 473

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-DVALIEADNE---- 367
                  +  G  +  +        SD       E    +     +  V  +E++      
Sbjct: 474  RAEQRTQGRGAFLFRNDQSNQVPFSDALAQGRKETLEVDGAPLTALTVWHLESEQPVSGV 533

Query: 368  ---REEAISIAIALRMSLDENKK------------------KSALITADRNLARRVKLEL 406
               ++ A S A  +   L+  ++                    A++  D   A+ V+ +L
Sbjct: 534  IYRQQLAASCASEIVRLLNAGQQGRAGFAMLDKPLRGLRPADIAILVRDGKEAQAVRQQL 593

Query: 407  -TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL---NDFMAIATLVKHPLAKFGFPEK 462
              R   ++ +S    +     +  L S L A  +        A    +   L        
Sbjct: 594  SARGVRSVYLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERL 653

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                      ++  RG +  +    +  ++   +        +        E      + 
Sbjct: 654  NQDELAWERRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLM--TRTDGERVLTNLLH 711

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            L + + Q    L   +        +L++S          Q + L+   +L  +    + K
Sbjct: 712  LSELLQQAAAELDGEQALIRHLGDHLALSGQAGE----EQILRLESDEQLVKVVTIHKSK 767

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITR--------LIDGETVKPKIEKSSTLFILGTL 634
             L      +    S    +                  L   E +  + +       L  L
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADGNSQISLQPTEALIQQADDERLAEDLRLL 827

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
               L   +     G+ +      +      S +           +         ++A G 
Sbjct: 828  YVALTRSEHACWLGVADLKRGNASNSMLHRSALGYLLGGGVALAESAELKVWLRDLAQGC 887

Query: 695  RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
              +      +    PT       R             +     ++     L         
Sbjct: 888  DAIAL----QPVPEPTDERFNAPRNEAALVKLLVPKRRAAENWWIASYSALRIGDTVTTG 943

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                P  P             ++L +D           L       + P   + GT  H 
Sbjct: 944  ADESPDSPQA-----------QKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHG 992

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            ++     +         + L   +      ++         W +         L    ++
Sbjct: 993  LLEWAGNEGFAVTAHAPDKLQDAVARRCNRRD------WAGWINTLSDWLQHMLNMPLRL 1046

Query: 875  QSSIEKIFV-----------NIPAKMAIESIGIH-------------------------- 897
                  + +            +    A  ++ +                           
Sbjct: 1047 SPDATPVALGELDQPNQYRIEMEFWFASNNVNVAQMDALVRRFTHNNAPRAATETVSLNG 1106

Query: 898  -LTGFADRIDLLKSGFVDITDYKTGDNPKKETA-----------QKLIDPQLSLEAAALK 945
               GF D     + G   + DYK+      +TA               D Q  L   AL 
Sbjct: 1107 MFKGFIDLTFEHE-GRYYVADYKSNWLGTDDTAYTELAMETAILDNRYDLQYVLYLLALH 1165

Query: 946  AGSFSQID----CRKVANLFYIRLKQKFKID 972
                +++      + +    Y+ L+    + 
Sbjct: 1166 RQLKARMADYDYDQHMGGALYLFLRGSRSVS 1196


>gi|237786044|ref|YP_002906749.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758956|gb|ACR18206.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 705

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 67/643 (10%), Positives = 157/643 (24%), Gaps = 64/643 (9%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T +A +E+R     I G  +      ++      ++ +          P   
Sbjct: 67  QQVHAVTFTTKAAEEMRERL-RIMGAGAV---QARTFHAAARKQLSYFWPRIAGDLP--- 119

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    R++      +   ++    ++           I  +K  A +I   + E++
Sbjct: 120 --------WRILDDKFRMVSRALRHTGIKAGKETIRDVIGEIEWSK--ARLISAADYEKR 169

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL-----NASSPVGYQIALMRAEA 219
                     E+      +AAD +  A + + +          +    + Y    M    
Sbjct: 170 ---------VEQLHREPPIAADKVADAYRVYEDIKATPEGVFLDFDDLLLYVAGAMENLP 220

Query: 220 EHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
           E     +      ++       P   R++       +   V+   D +     +      
Sbjct: 221 EVAEEFRARYRSFVVDEFQDVTPLQQRVLDGWLGDRDDITVV--GDANQTIYSFTGADPS 278

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                         PQ      +  L             + ++ G +  +        ++
Sbjct: 279 FLLRF---------PQRFENATVVRLQRDYR-------STPQVVGLANKVISQSRDGVST 322

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITAD 395
                +      P            E D+E  EA  +A  +R  ++      + A++   
Sbjct: 323 ADFTLEGQRPAGPEPV-------FEEFDDESLEAAVVARRIRRLIESGVPPSEIAILFRL 375

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSS-ILTSLLNAIFKLNDFMAIATLVKHPL 454
              + + +  L    I   +  G         +  L +L        +   I T      
Sbjct: 376 NAQSEKFEHALDEANIPHHVRGGKSFFDRSEITGSLAALERLASAHMESGTIHT---GDA 432

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                      +  +A      R  +    +  L  L+ D +                  
Sbjct: 433 LVSDIKAVLARQGLSAQAPAGERARERWESLSSLYHLIADIVHASPGADMPAVMSILRER 492

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                    V+ +                    L            L +  ++E R+L  
Sbjct: 493 AQSNRPPAGVEGVTLATIHAAKGLEWDAVFVVGLVEGTLPIRQAIALGSSAIEEERRLLY 552

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +      + L   +S   E+G         ++D I           +  K S+       
Sbjct: 553 VAVTRAREHLQLSWSLARESGGRASRKRTRFLDSIAPTSKSSADHRRKRKRSSRLCSECG 612

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            +     + ++      G        +      ++     +T 
Sbjct: 613 ATLQTPAEKVMGHCSRCGNDVDANLVDALQRWRLRRAHQQRTP 655


>gi|297622299|ref|YP_003703733.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093]
 gi|297163479|gb|ADI13190.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093]
          Length = 1106

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 95/903 (10%), Positives = 221/903 (24%), Gaps = 103/903 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTA-DLLLSYNLNPPVS 104
            +     T +A  EL+     + G+ +  L  + +          A   L+       + 
Sbjct: 60  EILAVTFTNKAAGELKERVAHLMGEAAKDL-WVSTFHSACLRILRAYGGLIGLEPGFAIY 118

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +    LE+ + IL     L D    +                     L  +ID  ++   
Sbjct: 119 DDTDQLEVLKEILERVTGLGDANPRV---------------------LRALIDRAKSNLW 157

Query: 165 KWEDLHALKNEKYGMWWL-LAADFLKIASKYWTERLVELNASSP---VGYQIALMRAEAE 220
              +L       +G     L  + +    + ++ RL  +NA      +G  + L     E
Sbjct: 158 TPAELAREGERVFGGMVAGLPLELVAEVYERYSSRLRSVNAVDFNDILGRTVELFERFPE 217

Query: 221 HLMKGTKGPII--IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
            L K  +  +   +     +  A  RL   +AN     +V+   D  +P           
Sbjct: 218 VLEKVQQRAVFIHVDEYQDTNTAQYRLTRLLANKYANLMVVGDPDQCLPPETRIPTRRGC 277

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
             I                     L          G+V+    GR               
Sbjct: 278 LPIACVQEGDEV------------LGTGGGLQPTWGHVTTVKRGRYRGPMWEVRVGGRVV 325

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEA-------------ISIAIALRMSLDEN 385
                 L     + +  F  V L+  ++                    +   +R++ +  
Sbjct: 326 RGTPHHLVLARLDPEAGFYYVYLMYREDRGYRLGLTKSLRANDFGQDEVGFRVRLAQENG 385

Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIP-LSTTLHSSIL--------TSLLNA 436
            K   L         R       +        G+P L        L            + 
Sbjct: 386 DKLWVLRVCQTYAEARY------WEARFAAEYGLPTLVFHGVGRRLKMDEGWIARLYQDV 439

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL-------RGNKNSYDIMDLK 489
               +    +A L  HP      P+  L R    L +                  I    
Sbjct: 440 DTTASAARLMAQLHLHPDFPHYRPQNGLRRQSVNLVMFQDFRHGGVGYHRVQWSSIRADL 499

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
           +  L        +     +++ +  +    A+       +     +  K   +    +++
Sbjct: 500 AARLLAAGYPVRSNGRGGYRTEICRKSYRDALAFARGFAEAGGLELQRKAYIDGRMYHVT 559

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS---KIIETGSCIKANAIEWI 606
                   +  L          +     +                    + +  +   + 
Sbjct: 560 PLAHLHPGMRVLVKREQSLEEAVVETVSQVAYDGPVFDLEVTPTHTYLANGMLVHNSIYA 619

Query: 607 DIITRLIDGETVKPKIEKSSTLFI---LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
                + +    +     ++   +     ++ S L   + +I              K   
Sbjct: 620 FRGADVRNILDFREDFPDAAVYRLELNYRSVASVLELANAVIAPNEGRLEKRLRPVKGAG 679

Query: 664 LSRVMQSDLNLKTAEKYIGQA--AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
               +    + +    ++ +       E     +           +     +     +  
Sbjct: 680 DKVRLYRAADHRAEADFVARQIERLQAERGLSAKDFTVLYRTNSQSRVLEEALRRAGIPA 739

Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                     ++  +  L + R          ++R    P      R    +  + L+  
Sbjct: 740 KIVGGVGFYERREVKDILSYARAALNPADDVAWRRVLNRP-----KRGIGKTSEETLV-- 792

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE----INHLMKQ 837
             A  A+R ++        ++P    RGT     I E +    +             ++ 
Sbjct: 793 --AFAAKRGIRFSEALRRAEEP---LRGTPALKRIGEFVALMDDLREAAETLPAAQFLQA 847

Query: 838 IIDSHFEKENLPPHIDIIWRHLFH---KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
            ID     + L        +       ++ ++  E +E+   SI +         +++  
Sbjct: 848 AIDQSGYLQALKDEKSFEAQGRIENLDELVNAVAEWQEETGGSIGEFLDEAALLASVDDR 907

Query: 895 GIH 897
            + 
Sbjct: 908 AVK 910


>gi|209547839|ref|YP_002279756.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533595|gb|ACI53530.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 686

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/543 (10%), Positives = 133/543 (24%), Gaps = 61/543 (11%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAI--------QELRSEFIEITGKKSTILPIIKS 80
           TL     +  +       + +   ++RA         +  R       G  +  L    +
Sbjct: 42  TLAHRVAHLIVKGADPRRILLMTFSRRAAAEMARRVERICRDVLGANAGVMADALNWSGT 101

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
              +       D      L+   +   R    A LI + R+ L     +    +  +   
Sbjct: 102 FHGIGARLLR-DYAQQIGLDADFTIHDREDS-ADLINLIRHDLGFSKTESRFPAKGTCLA 159

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                             I +     E            W       L+     + E   
Sbjct: 160 ------------------IYSRAVNSETALDQVLRDAFPWCAAWEKQLRELFACYVEAKQ 201

Query: 201 ELNASSPVGYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             N        +   +   E ++          +++     +    A ++  +     G 
Sbjct: 202 SQNVLDYDDLLLYWAQMVGESVIAEDIGSRFDHVLVDEYQDTNRLQASILMALKPQGQGL 261

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V+   D       +   T ++     +  +    P  ++  L               + 
Sbjct: 262 TVV--GDDAQSIYSFRAATVRNILDFPAAFS----PAANIVTLDRNYR----------ST 305

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
              +   + VI  +      +        E              L+   +E ++A  +A 
Sbjct: 306 QPILAAANAVIDLASERFTKNLWTERQSAERP-----------RLVTVRDEADQARYVAD 354

Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +  + +E    K+ A++    + +  +++ELTR  I      G+    + H   + + L
Sbjct: 355 MVLDNREEGLTLKQQAVLFRASHHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAAL 414

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                  D +A   L++          +                          +     
Sbjct: 415 RFAQNPRDRVAGFRLMQILPGVGPSTAQKALDLMAEDASPITALAAMPAPPRSGEDWTDF 474

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               Q+  +    W + +    +  A  L        T        +    G  S   + 
Sbjct: 475 VSMLQEMKSGKAGWPAEIELARQWYAPHLERLHEDAATRQADLLQLEQIAGGYASRERFL 534

Query: 555 KLT 557
              
Sbjct: 535 TEL 537


>gi|317153299|ref|YP_004121347.1| hypothetical protein Daes_1588 [Desulfovibrio aespoeensis Aspo-2]
 gi|316943550|gb|ADU62601.1| hypothetical protein Daes_1588 [Desulfovibrio aespoeensis Aspo-2]
          Length = 338

 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 23/191 (12%)

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
            ++  T ++S  +   N   A   R I +L  +            G++ H+ +     +R
Sbjct: 1   MSELMTTTYSMWRLFRNCRMACKWRYIDELVPLE----RDPNLAFGSVIHDCLECWHGER 56

Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
                      +   ID  +       H    W HL   +  ++ EH        E + +
Sbjct: 57  N-------LAKVLDHIDRTYPNRAQDDHQQADW-HLARAMMSAYAEHYPA--EEFEVVAL 106

Query: 884 NIPAKMAI-------ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI-DP 935
               +  I        S    + G  D I + + G   + ++KT         ++L  D 
Sbjct: 107 EKTFEGPIVNPATGATSRSFIIAGKVDGI-VRQDGQYFLLEHKTASQIDASYLERLWTDF 165

Query: 936 QLSLEAAALKA 946
           Q+ L A  L+ 
Sbjct: 166 QIILYAWYLEQ 176


>gi|117619432|ref|YP_858409.1| exodeoxyribonuclease V, beta subunit [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
 gi|117560839|gb|ABK37787.1| exodeoxyribonuclease V, beta subunit [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
          Length = 1205

 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 73/779 (9%), Positives = 170/779 (21%), Gaps = 84/779 (10%)

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             ++ T    +I     + P   R+   +        +L   D       +      +   
Sbjct: 376  RIRATYRVAMIDEFQDTDPQQYRIFHRLYGGHTDTALLMIGDPKQAIYGFRGADIFTYIQ 435

Query: 282  TSSNTTYS------THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
               N +             +L   ++ L  + +D          +   +   SK+     
Sbjct: 436  ARRNVSAHYTLGRNWRSSRALVAAVNGLFERAKDPFIYEADIPFLPVEAQGKSKALQLDG 495

Query: 336  TSD-----MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA 390
             +       + +        + Q   +    +E       A +    +     +    + 
Sbjct: 496  EAAPVLHCWQLSGQPTFNKGDYQSRMARATAVEIHRLLTLARAGKAQIGDQPVKAGDIAV 555

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            L+          +        ++ +S    +   + +  +  +L+A     +  ++   +
Sbjct: 556  LVRTGAEGKLVQQELARLAIASVYLSNRESVLAQVEAREILLILHACQNPGEERSLRAAL 615

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
               L            +       A++       I   + ++    A            +
Sbjct: 616  ATGLFDLDAKALDELASDERAWESAVQEFMEYRKIWHKRGVLAMLRALLHRRNLASSLLA 675

Query: 511  RLSEEDKE----LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              + E +         L+  +   +                    D  ++     +   +
Sbjct: 676  SPNGERRLTNFLHLGELLQQVSCELDGEYALLRWLGEAASRPDGQDAEQVLRLESERKLV 735

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                   +   E     L  + S                   +  L   E    + ++  
Sbjct: 736  QIVTIHKSKGLEYPLVFLPFICSHRAADTPLFHEADGAGNRTVLDLNGAEESLAEADRER 795

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
                L  L   L         GL         ++   L       L  K  E      A 
Sbjct: 796  LAEDLRLLYVALTRGVYATWLGLAPVRSGNGKSEKTDLHHTAIGYLLQKGEEGDAATLAT 855

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                                   T  +        LG            + +   +    
Sbjct: 856  ALTELTQA----LPGVAVGEPSLTRPAPMAAEEDQLGEPQVRHFTGTLERDWWISSYSGL 911

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                  H K     P  + +      +E   L  D               P     P   
Sbjct: 912  AAQGHGHSKGVLANPGFDDEV----VTEAAALAADLSTAQQEEA----PQPSIFTFPKGA 963

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
              GTL H++   +  +                +  H          D  W  +  +   +
Sbjct: 964  RPGTLLHSLFETIDFQSAGGEP----------LAEHIATLLAQDGFDESWAPVLQQQVEA 1013

Query: 867  FLEHEEK-------IQSSIEKIFVNIPAKMAIESIGIH---------------------- 897
             L+   +           +      +  +  +    +                       
Sbjct: 1014 VLDTPLETGFGEPVRLRDLAPERKQVELEFFLPMGRVTAPALTALCQQHDPLSRGNKPLS 1073

Query: 898  -------LTGFADRIDLLKSGFVDITDYKT---GDNPKKETAQKLIDPQLSLEAAALKA 946
                   L GF D +   + G   + DYK+   G +P   +         +LE A  + 
Sbjct: 1074 FATVQGMLKGFIDLVFEWQ-GRWYLLDYKSNHLGMSPADYSLP-------ALEQAMAEH 1124


>gi|162451111|ref|YP_001613478.1| exodeoxyribonuclease V beta chain [Sorangium cellulosum 'So ce 56']
 gi|161161693|emb|CAN92998.1| Exodeoxyribonuclease V beta chain [Sorangium cellulosum 'So ce 56']
          Length = 1347

 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/432 (11%), Positives = 105/432 (24%), Gaps = 30/432 (6%)

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
           A  L   D              +  + +    +S           D     RE       
Sbjct: 489 APALWSPDPSADFVALRESRRSTPELLAFINAFSARDFAQDRGAGDGDAGAREVGSPPRE 548

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                     +++      +              P+        A  +       A  IA
Sbjct: 549 FEIAYSAAEHLVAAPGRAAEGPTNVVLVSDGGGAPDGVDALVRDARGQLREALIAAAYIA 608

Query: 376 IALRMSLDENK-------------KKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
             +R +  +               +  A++T  R+    V+L L R  I   + AG  L 
Sbjct: 609 RRVRGAGGDGAAGGDGAATGDLRFRDVAVLTRRRSTIPLVELALARLEIPYVV-AGRALF 667

Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
                  L ++L  +    D +A+AT+++ P+         L                  
Sbjct: 668 DAAEVRDLAAILRLLLDPRDRLALATVLRGPVVALSDTSLALLA---------------- 711

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                L   +L R         V       +E D    + ++  +       +     + 
Sbjct: 712 PPGRGLAVPLLGRWPAAALAQGVWSPSPDDAELDDGRPLPVLARLPAGDRERLEAFRARY 771

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
           +     ++       +         +         +     +  L S     G  + +  
Sbjct: 772 AGLRRAALRSTPGEAIRAAVTAFDLDRVLAALPRAQARLGNVDRLVSIARRRGGSLASFV 831

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
                 I    D         +   + +     S+ L+F  ++L  LN          + 
Sbjct: 832 RWLDRRIRDEADEPEAAVFSPEDDAVRLTTIHASKGLDFPAVVLLDLNAEPRASQPGLSY 891

Query: 663 FLSRVMQSDLNL 674
             +   +    L
Sbjct: 892 VPAAGDRPAALL 903


>gi|83815427|ref|YP_444856.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
 gi|83756821|gb|ABC44934.1| probable ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
          Length = 855

 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 78/784 (9%), Positives = 157/784 (20%), Gaps = 99/784 (12%)

Query: 65  IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124
           I     +  + P                      L  P  N + L  L R  L W     
Sbjct: 40  IARLVTQGGVAPGNILASSFSRATAQDLEAGLTELGLPDVNCRTLHSLGRQFLKWAEAEH 99

Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLAD---------IIDIIETE------------- 162
              + L  E      + P  A      LA           ID  E E             
Sbjct: 100 HWSRRLGDEDLNPSRLGPVLAGRALTRLARERDVDDHELDIDRGELEDQVSAWKAQLCYP 159

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE---- 218
           +     L     E+         DF+    +Y+ E        +     +    A     
Sbjct: 160 DLDEAALPPAAREEARQAEHDNEDFVT-LYQYYEEERRREGWVTFDDMLLEGWEALLRFD 218

Query: 219 -AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     ++I           +++  +         +   D       W      
Sbjct: 219 DLRARAQQAYEHVLIDEFQDISRVQYQMLDVLTEPHRN--YMAVGDDDQCIYEWRGANPS 276

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                                                     +       +   +  +  
Sbjct: 277 FILDFREEYEA---------------------------DEYLIRDTFRSQAPHTVLANAV 309

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITAD 395
              N    E  +   +       +  AD    EA  +A A+   LD  +   +  ++   
Sbjct: 310 IAHNDHRREKHLNLTRGFGGSTQVHAADGADAEATHVAGAIESQLDTGRTLPEMVVLVRQ 369

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
                 ++       +   I   +P        +L             +   TL      
Sbjct: 370 YAQTPSLEQVFIDRDLPYRIVGNVPFYRRRPVQVLL----------RHLFWGTLEATVRT 419

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
              F  +  ++         +R          +  L         + T +    +     
Sbjct: 420 AGWFDHRRNAQRYVDRFQKLMREPNRYVSTDLITRLCR---EAVGDETSITDLLAASMGA 476

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             +     V+  L     LV           +  I                        L
Sbjct: 477 MHDRTAERVERFLDTADQLVDRLDEPAHRTVDWLIKAL----------------DYEDYL 520

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-IDGETVKPKIEKSSTLFILGTL 634
                 + L+    +   +         +   ++ R+         +  ++  L I    
Sbjct: 521 RRYSAFEELADRRIRTARSLIDFARGHPDVASVLRRIKEISVDRPDRGAQADVLEIRSIH 580

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++   +  + + G N+G  P +   +                         D   A   
Sbjct: 581 RAKGREWPVVFVPGCNDGTIPTSRDDSTMPPPDEDDSAGASDDSGSEDSDTDDAPAARRE 640

Query: 695 RHLIYTRSLRENNIPTI---------ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
                           +          S +L            D ++       D     
Sbjct: 641 EERRLFYVALTRAQEQLHLSYDRTEPPSPFLAEADAEHRLALCDRVRPVFHRPADDWAAA 700

Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
           D           +    L            + L        A R      I  + +DP  
Sbjct: 701 DVAWLCIGAGALRLRRYLTTWWDPTEAQR-RALAAHLGREEALREAADAEIAAYARDPGA 759

Query: 806 TDRG 809
            ++G
Sbjct: 760 EEKG 763


>gi|206603905|gb|EDZ40385.1| Putative exodeoxyribonuclease V, beta subunit [Leptospirillum sp.
            Group II '5-way CG']
          Length = 1095

 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 98/981 (9%), Positives = 225/981 (22%), Gaps = 163/981 (16%)

Query: 57   IQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
            ++  R+        ++      + + +V+E+           L        R +   R+ 
Sbjct: 188  VRMFRTASARRGSPETCF----RPVEEVMEQYRARRQTFREALGIVFPERSREVLPHRVR 243

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
             +  ++    +   Y ++ L     P         L +++       +  +++       
Sbjct: 244  DLLGDREIPALGLSYDDADLGETFPPGE-----DALRELLGRTLQSARDLQEVIRSSFRD 298

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST 236
                W       +   +     +   +    +    +L R      ++       +  S 
Sbjct: 299  LAGTWKH-----RELREREVRGIATYD-DLILRVADSLERESVAQRLRDRFPVAFVDESQ 352

Query: 237  GSIPATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
             +    + + + +   P  G+ +    D       +             +    + P   
Sbjct: 353  DTSRDQSGIFARIYRDPRPGSALFWIGDPKQSIYRFRGADV--GAYLEFSRQAKSSPPLR 410

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN-------K 348
            L+            V RL       +    V      P         D   +        
Sbjct: 411  LSVNYRSSPGVLHAVNRLFGRHPSPFLLEGVSYHPSSPVSGRKPELVDPAFSGSCFLVYP 470

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
                +    D A + AD      +     L           A++    +   RV      
Sbjct: 471  GRGPKDKLDDFARVTADEVDR--LLSGKILLNDRPLAASDIAVLVPKNDDGERVAGFFRE 528

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
                     GIP ++    S+  +        ++   +   +  P               
Sbjct: 529  R--------GIPYNSASPGSVFHTHEA-----DEIATVLDALLSP--------------- 560

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                       +     + L + +    A + +       Q+R  +E    A  L     
Sbjct: 561  ----------WRMPVLCLALGTGLFGWDARRIDGLVRDPEQARPVQEVFLEASRLWRTHG 610

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                    +      T    +     ++     +          P        +   S  
Sbjct: 611  IRAAFRELFFRMGVWTRLLSAGRTRQRIDRLVDRIEKAAGQFPTPPDQHRFFSRARLSPE 670

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
             +  E     +                          + + IL   +S+ L F  + +  
Sbjct: 671  GESHEETVGGE------------------------PGTGVHILTVHKSKGLEFPVVFVP- 705

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
                       K        + +    +           +      R  +Y         
Sbjct: 706  ------FGIPEKTRKEEEAFREEDGEDS--DQSESLRLLYVALTRARERVYLFCPLNRKK 757

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK---------- 758
             +     L+    L G       +KR     +   +         +  P+          
Sbjct: 758  QSALDHLLETDRHLEGRREKTVTEKRFFAMREALEEAFSGVDGVSFFEPRESSGERNHKT 817

Query: 759  ---------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH----- 798
                              PL    R  SF+ I     D  A      L  D         
Sbjct: 818  PKEQGKVEDEIVVRSLAHPLPVPRRVTSFTAIVARGEDSDAWNGTDPLIGDEDGEDLSGN 877

Query: 799  --FKKDPDRTDRGTLFHNIITE----LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
               +        G   H ++ E    +++ +  K        +++ + S F   + P   
Sbjct: 878  LVERPGAAGRAFGVFVHGVLEEAGKWIVRYKKAKKISPSRADVREWLRSSFP--SRPSDE 935

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSI-------EKIFVNIPAKMAIESIG--------IH 897
               W     +++   L       S +       ++     P  + +             H
Sbjct: 936  VGGWTASALELAEQGLCTPLIPISGLPLADLLDDRSRFEEPFLLRLPDEENAGEREVASH 995

Query: 898  LTGFADRIDLLKSGFVDITDYKTG---------DNPKKETA--QKLIDPQLSLEAAALKA 946
            L G  D + +     V + DYKT               E        D Q  + + A + 
Sbjct: 996  LRGVID-VVVWSGKTVYLIDYKTNFLTAEGNPYAPESLERVLSDHRYDLQARIYSGACRR 1054

Query: 947  GSFSQIDCRKVANLFYIRLKQ 967
                  +  +     ++ L+ 
Sbjct: 1055 HLALTGNEGEFGGFLFLFLRG 1075


>gi|134100194|ref|YP_001105855.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133912817|emb|CAM02930.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 1044

 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 68/584 (11%), Positives = 130/584 (22%), Gaps = 100/584 (17%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
                   T+RA +E+      + G  +  L  + +      +                  
Sbjct: 519  ECLAITFTRRAAEEMTERLHALAGPTAAEL-TVATFHSFGLQLLRDHHD----------- 566

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                          +  L              +    A     AK L   +         
Sbjct: 567  --------------KAGLSADFGLADASVQHEVLTEVAGDERAAKALRAELSRARRGGDT 612

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----E 220
             ED  A                   A   +T  L E N        +  +R         
Sbjct: 613  DEDTAA-------------------ALHRYTTALRERNLIDFDDLVVLPVRLLESDDELR 653

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
               +     I +           RL+  +A  P GA +    D       +         
Sbjct: 654  AAYRDRFRWITVDEYQDVDEMQYRLLRQLA--PAGANLTAVGDPDQAIYSFRGADVGFFL 711

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                       PQ  + +L       R  +                              
Sbjct: 712  RF-----QQDWPQAPVVQLTRNYRSGRHILDGAVRAIRPGTLV----------------- 749

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-------DENKK------ 387
                    +P   +    + + EA +E  EA  +A ++   L        ++ +      
Sbjct: 750  ---PDRVLLPAGDRPAQRITVHEATDEHAEAAFVARSIDRLLGGASFHSLDSGRVDGDGH 806

Query: 388  ------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                    A++    + +R V  EL R G+ +   +  PLS       L   L  +    
Sbjct: 807  GGIGFADIAVLYRTDSQSRAVLDELVRCGLPVQKRSHDPLSARPGVDHLMRELALVPARK 866

Query: 442  D--FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                  +       LA      +  +   +A   + +   +   D +      L   A  
Sbjct: 867  GSVPERVRWAADAVLAAMPDAVQEQTAEIHAAAELLMPLAQRCGDDVQRFRRELLLGAEV 926

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                      S L+    +     V  ++ C   L+  +    +   +    +  +    
Sbjct: 927  DALDPRADAISLLTLHAAKGLEFPVVFVVGCEDGLLPLRWPGATPENDDIAEE--RRLFF 984

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                   D             G    +  S  +E         I
Sbjct: 985  VGMTRAQDHLHLTRAARRTRHGTERDTRPSPFLEGLGEDIVERI 1028


>gi|162148662|ref|YP_001603123.1| DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787239|emb|CAP56832.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
          Length = 699

 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 53/535 (9%), Positives = 130/535 (24%), Gaps = 45/535 (8%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
           TL     +          + +   ++RA  E+      I   ++ +      L D +   
Sbjct: 55  TLAHRVAHLIATGTDPRRILLLTFSRRASTEMTRRVERIC--RAVLGDKAGPLADALAWA 112

Query: 89  FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
            T   + +  L      I      +         L ++++     S              
Sbjct: 113 GTFHSIGARLLREYAEQIGMDPAFSIHDREDSADLMNLVRHDLGFSKTEKRFPAKGTC-- 170

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
                 I   +        D+      K+  W       LK     +             
Sbjct: 171 ----LAIYSRVVNSGVPLGDVLL----KHYPWCAGWEAQLKQLFAAYVTAKQAQGVLDYD 222

Query: 209 GYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
              +A  +  AE ++          I++     +    A ++  +   P+G  +    D 
Sbjct: 223 DLLLAWAQMVAEPVLAADIGGRWDHILVDEYQDTNRLQADIL--LGMKPDGRGLTVVGDD 280

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +   T ++     +       P   +  L               +    +   +
Sbjct: 281 AQSIYAFRAATVRNILDFPAAFD----PPARIVTLDRNYR----------STKPILDAAN 326

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD- 383
            VI ++               E              L+   ++  +A  IA  +    + 
Sbjct: 327 AVIGEAAERFTKDLWTERASDERP-----------RLVTIADDTAQADYIAGRVLEEREG 375

Query: 384 -ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
               K+ A++    + +  +++ELTR  I      G+    + H   + ++L       D
Sbjct: 376 GTALKEQAVLFRVSHHSATLEVELTRRNIPFVKFGGLKFLDSAHVKDVLTVLRFAQNPRD 435

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            +A   +++          + +       +       +    +   ++            
Sbjct: 436 RIAGFRVLQLLPGVGPTSARRVLDTLGESDRPLEALAETKAPMRSGEAWQGFMETVMALG 495

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                W   ++         L                 +    G  S   +    
Sbjct: 496 GGKTGWPGEIAAVRAWYEPHLERLHEDATMRQADLVQLEQIAGGYPSREKFLTEL 550


>gi|115378634|ref|ZP_01465785.1| ATP-dependent exoDNAse beta subunit, putative [Stigmatella
           aurantiaca DW4/3-1]
 gi|115364346|gb|EAU63430.1| ATP-dependent exoDNAse beta subunit, putative [Stigmatella
           aurantiaca DW4/3-1]
          Length = 1134

 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/566 (9%), Positives = 127/566 (22%), Gaps = 33/566 (5%)

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
           A +    D       +         + +              +          D      
Sbjct: 371 AFLCAVGDRKQSIYEFRGADVSVFALLAEKMVAEGG-AKGFLQDNRRSVPALLDFFNRAF 429

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
               +        +    P   D+       ++ P +++     A   A+    +A ++A
Sbjct: 430 AGVLVASDPPRPYEVEYVPKEDDLSPVRPALSEEPAVERLLIGEAETAAEARERDANAVA 489

Query: 376 IALRMSLDE-----------------NKKKSALITADRNLARRVKLELTRFGINIDISAG 418
             LR+ L                        A++          +  L R G+   +  G
Sbjct: 490 HRLRLMLAPGAAPCVAHEDGQRLRPARGGDVAILLRTFTHLEVYRQALIRHGVPHRVLRG 549

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
                      L SLL  +   +D +A+A +++ PL        +   + +    +A   
Sbjct: 550 RGFYGAQEVLDLASLLALLADPDDSLALAAVLRSPLVGLSDASLFRLSSGDQGLSLA--- 606

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                   DL +  L      +    +    S   E D+     L+   +          
Sbjct: 607 ---GVLQKDLAACELAPNERLRLERFLTALPSLRRERDRLGVKALLQVAMNITGYREAMA 663

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS-- 596
               +   + +I     L     +            L    E +   +    +       
Sbjct: 664 GTPYAEQASANIDKLLALAGRRDERGTGGCVAFARELRMLVESEPTEAQADLLDAGDPRA 723

Query: 597 --CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
              +  +  + ++    ++ G     +  +S+ +         L  +    L   + G +
Sbjct: 724 VQLLTIHRAKGLEWPVVVVPGLG-GKRRSESARVHFERIHGLVLRPWLPDTLESFSSGRF 782

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
                +   L     ++                       + +  +     +      + 
Sbjct: 783 EAVKDE---LDARGLAEYRRLLYVALTRARDVLLLSGTAEKRVPLSWWTMIDGRLGTDAA 839

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
              R+  +                                 R              S   
Sbjct: 840 LRARVRDVEAAALPPPADPLPPDAKALVEAEARVEAALQRVRGSTAVREPVSAV-ASAEA 898

Query: 775 IKQLINDPYAVYARRILKLDFIPHFK 800
           ++  I  P        L L     ++
Sbjct: 899 LQDFIICPRRYRYIHQLGLTGHRPWE 924


>gi|146307014|ref|YP_001187479.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas
            mendocina ymp]
 gi|145575215|gb|ABP84747.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas
            mendocina ymp]
          Length = 1209

 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 84/858 (9%), Positives = 203/858 (23%), Gaps = 93/858 (10%)

Query: 200  VELNASSPVGYQIALMR----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH--- 252
             E+     +    A ++    A    +++      +I     + P   R+  T+      
Sbjct: 350  AEMGFDDMLVRLDAALQGSNGARLAEVIRRQFPVALIDEFQDTDPLQYRIFDTLYEVEAN 409

Query: 253  PNGAIVLPGLDCHIPTAIWNTIT-----EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
                 +    D       +                  +     + + S A +     +  
Sbjct: 410  RGDCGLFMIGDPKQAIYSFRGADIHTYLRARRATLGRHYNLEKNFRSSQAMVDAVNGVFL 469

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
               +R G     +    +   +                +  +        +        +
Sbjct: 470  RAEQRDGGEGAFLLRDDLPFIEVGAQGRGEVWSVEGQAQPALTVWHLASDEPVAKGVYLD 529

Query: 368  REEAISIAIALR----------------MSLDENKKKSALITADRNLARRVKLELT-RFG 410
               A + +  +R                +         A++  D N A+ ++ EL  R  
Sbjct: 530  AMAAGAASEIVRLLDLGQCGQAGFIKDGVLSALRPSDIAVLVRDFNEAQAIRGELAARGV 589

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH---PLAKFGFPEKYLSRA 467
             ++ +S    +     +  L   L A  + +    +   +      LA     +  L   
Sbjct: 590  RSVYLSDKDSVFAAQEARDLLLWLRACAEPDQDRPLRAALASATLGLALSELEQLNLDER 649

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIA--TQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                 ++  R  +  +    +  ++   +                R+      LA LL  
Sbjct: 650  TWERRVMQFRDYRQRWQRQGVLPMLRQLLQDFELPQRLMGRDDGERVLTNLLHLAELLQQ 709

Query: 526  HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
               +    L   +       G    +D   L +   + +                     
Sbjct: 710  AAAELDGELALIRHLGELLTGEGQAADEQVLRLESDEALVRVVTIHKSKGLEYPLVFLPF 769

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                + ++    ++ +  E   ++ +  D    + + E+      L  L   L       
Sbjct: 770  VCAFRPVDDKKPLQIHDGERRRLVLKADDDSLARAERERLG--EDLRLLYVALTRARHAC 827

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
              G+ +             S +                       A          S  +
Sbjct: 828  WLGVADLKIGNGKKSRLHESALGYLLGGGLPLAASGELVNWLAPFA----------SGLD 877

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
            + +  +     QR  ++    F  + +   +   +      Y+  +     P      E 
Sbjct: 878  SAVSPVPPASEQRYRMIEEGQFVPHWRTPARRAAEHWWIASYSALRLDEDAPSQVSRHED 937

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
                    +      DP    A        +  F + P+    GT  H ++    ++   
Sbjct: 938  AAPDSPAMQNVIDDEDPLLALAPLPASAQGLHRFPRGPNP---GTFLHGLLEMAAQEGFA 994

Query: 826  KNTPEINHLMKQIIDS-------------------HFEKENLPPHIDIIWRHLFHKISHS 866
                + + L + +                         +       D +      +    
Sbjct: 995  TLAQDPHRLREALARRCQRRGLQSWIDPLQDWLLALLSQPLPLAGADTVVLAQLTQYQPE 1054

Query: 867  FLEHEEKIQSSIEKI-----FVNIPAKMAIESIGIHL----TGFADRIDLLKSGFVDITD 917
                 E  +  +  +        +P           L     GF D +   + G   + D
Sbjct: 1055 LEFWFEAREVDVRLLDQWVQQCELPGVARQPLRADTLNGMFKGFIDLVFEHQ-GRYYVAD 1113

Query: 918  YK-----------TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFY 962
            YK           T +  +        D Q  L   AL      ++      R V    Y
Sbjct: 1114 YKSNWLGSDDGAYTREAIEVAIVSHRYDLQYVLYVLALHRQLRLRLPDYDYDRHVGGALY 1173

Query: 963  IRLKQKFKIDCITNDKKK 980
            + L+   +   +    ++
Sbjct: 1174 VFLRAPQQGAYLARPPRE 1191


>gi|148272380|ref|YP_001221941.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830310|emb|CAN01244.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 637

 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 63/580 (10%), Positives = 138/580 (23%), Gaps = 47/580 (8%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T RA  ELR    E+           ++      ++             P   
Sbjct: 97  RVMALTFTSRAAAELRGRLRELGAGPVA----ARTFHAAALKQLNFFWPQVVGGTMP--- 149

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                   RLI      L    + L      +     A  +   K     +  +E     
Sbjct: 150 --------RLIESKGRMLGHAAESLRLRLDTAALRDMAAEVEWRKV---SMISVEEYGLA 198

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
                 L  +      +      +        +L   +        I          ++ 
Sbjct: 199 ARTTRTLPPQLDADQAVALLQAYEDIKDQ-RRQLDFEDVLLATAGMIEA-EPWVAQQVRE 256

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
                ++       P    ++           V+   D       +           +S 
Sbjct: 257 QYRFFVVDEYQDVSPLQQTILDLWMGDRRDLCVV--GDASQTIYSFAGAKSAYLLDFASR 314

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP----DTSDMRN 341
                 P+ ++ +L           +    +     G   ++S    P      T+  R 
Sbjct: 315 F-----PEATVVRLERNYRSTSGITEAANRLMRGRPGALTLVSADADPDGDGTGTASPRA 369

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLA 399
                  +P   + F    +    ++  EA +IA A+   +      +  A++      +
Sbjct: 370 KGRGSAAVPGGGEGFRAPQVSAFPSDGAEARAIAGAIAQQIASGIAPEDIAVLYRMNGQS 429

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
             ++  L   G++  +                  L          A  ++   PL K   
Sbjct: 430 AVLEQALGDAGVSYQVRGSQRFFDRPEIKQALLALR--------GASVSISGEPLFKSVS 481

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                     A              +  +  L     A             R + + +  
Sbjct: 482 DVLRGLGWSQAPPEQPGAVRDRWESLDAIMGLAERMPAGSTFRAFTDELLERQAGQHEPT 541

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
              +       +  L + K  +      + +S+             +DE R+L  +    
Sbjct: 542 VSAV------TLATLHSAKGLEWEHVYLMGLSEGLVPISYAQTLEAVDEERRLLYVGITR 595

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
               L   +S+     S  +  +    ++ TR+  G   +
Sbjct: 596 ARSGLRLSWSRSGPHRSGQREPSRFLAELDTRIAGGGAKR 635


>gi|302554000|ref|ZP_07306342.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
           40736]
 gi|302471618|gb|EFL34711.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
           40736]
          Length = 760

 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 56/599 (9%), Positives = 145/599 (24%), Gaps = 76/599 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +SV     T RA  E+R    ++           ++       +       +   + P  
Sbjct: 98  SSVLAVTFTNRAAGEMRGRLRQLGAAGV----QARTFHSAALRQLQYFWPKAIGGSMPRL 153

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
             +++  +A      R +L                            L D+     T E 
Sbjct: 154 VDRKIQLVADAAAACRIRLDR------------------------GELRDV-----TAEI 184

Query: 165 KWEDLHALKNEKYGMWWLLAADF-------LKIASKYWTERLVELNASSPVGYQIALMRA 217
           +W  +       Y    + A          +      + +   E +        +  +  
Sbjct: 185 EWSKVTQTVPADYAPAAVKAGREAPRDPAEIAQLYAAYEDVKRERSVIDFEDVLLLTVAV 244

Query: 218 EAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
             +       ++      ++       P   RL+       +   V+   D       + 
Sbjct: 245 LQDRHDIAEQVRTQYQHFVVDEYQDVSPLQQRLLELWLGERDSLCVV--GDASQTIYSFT 302

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             T        +      HP  ++ KL+       + V     + ++  GR+        
Sbjct: 303 GATPDHLLDFRTR-----HPGATVVKLVRDYRSTPQVVHLANGLLSQARGRAA------- 350

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
                          ++ + +    +    E  +E  EA   A  +R  +D      + A
Sbjct: 351 -----------DHRLELVSQRAPGPEPLYTEYTDEPAEAEGAARRIRELVDSGVPAAEIA 399

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +   +  L   G+   +                  L    +     ++    
Sbjct: 400 VLFRTNAQSETYEQALADAGVPYQLRGAERFFDRPEVRKAGVALRGAARFGGNDSLLD-- 457

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
              +       + +   +                   L +LV                  
Sbjct: 458 --DVVDLPSQVRAVLSGEGWTPQPPAGSGAVRERWESLAALVNLAQDFAAAKPGATLADL 515

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
               +++  A          +  L + K  +      + +++          +  ++E R
Sbjct: 516 VAELDERAGAQHAPTVQGVTLASLHSAKGLEWDVVFLVGVAEGMMPITYAKTDEQIEEER 575

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
           +L  +      + L   ++     G         ++D +       T +     +  + 
Sbjct: 576 RLLYVGVTRAREHLHVSWALSRSPGGRPNRRPSRFLDGLRPGSTATTGRTSTAGAGGIE 634


>gi|33600795|ref|NP_888355.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
 gi|33568395|emb|CAE32307.1| probable ATP-dependent DNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 697

 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 60/562 (10%), Positives = 131/562 (23%), Gaps = 61/562 (10%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQE--------LRSEFIEITGKKSTILPIIKS 80
           TL     +  L+      + +   ++RA QE        L+       G  +  LP   +
Sbjct: 52  TLAHRVAHLILHGADPQRMLLLTFSRRAAQEMERRVGGVLQRVMGLRAGHAAPALPWAGT 111

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
              V       D      L+   +   R                D    +          
Sbjct: 112 FHSVGARLLR-DCAPRIGLSEAFTVHDR---------------GDAEDLMGIVRHELGLS 155

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
           +  N   L      I   +   +    ++      +   W       LK   + +     
Sbjct: 156 ATHNRFPLKGTCLAIYSRVVNSQAPLAEVL----RQAFPWCEAWEAKLKRLFQAYVLAKQ 211

Query: 201 ELNASSPVGYQIALMRAEAEHLMK----GTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           E N        +       +  +          I++     +    A ++  +     G 
Sbjct: 212 EQNVLDYDDLLLYWAEMMRDAGLAADVGARFDHILVDEYQDTNRLQAAILLAMKPDGGGL 271

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V+   D       +   + ++              Q+     +  L+      + + + 
Sbjct: 272 TVV--GDDAQSIYSFRAASVRNILDFPQ--------QFPGGAKVVTLERNYRSTQPILDA 321

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           SN + G +       L  D +  +  +                 L+   +E  +A  +A 
Sbjct: 322 SNAVIGLAAERYAKALWTDRASSQRPE-----------------LVSVSDEAGQARWVAD 364

Query: 377 ALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +    +     K  A +    + +  ++LELTR  I      G+      H   + S+L
Sbjct: 365 QVLAQREGGATLKSQAALFRASSHSAALELELTRRNIPFVKFGGLRFLEAAHVKDMLSVL 424

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                    +A   + +            L  A            +        +     
Sbjct: 425 RWAENPRSRLAGFRVAQLVPGIGPATAGKLMDAMAQAADPLAAMREFQPGAAARQQWSEF 484

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                        W + +    +     L              +       G  +   + 
Sbjct: 485 VATYATLREARRPWPADVDAALQWYGPQLERIFDDARVRRTDLEQLARLAGGYPTRERFL 544

Query: 555 KLTVTCLQNVCLDEHRKLPNLW 576
                   +   DE        
Sbjct: 545 TELTLDPPDATSDESGPPLRDE 566


>gi|149375448|ref|ZP_01893218.1| Exodeoxyribonuclease V, beta subunit [Marinobacter algicola DG893]
 gi|149360153|gb|EDM48607.1| Exodeoxyribonuclease V, beta subunit [Marinobacter algicola DG893]
          Length = 1234

 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 87/903 (9%), Positives = 210/903 (23%), Gaps = 198/903 (21%)

Query: 196  TERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
             +RL  +     +    A +        A  + +     +I      + P   R+   + 
Sbjct: 366  KQRLASMGFDDLLTRLDAALGGPQGERLAGTIRRQFPVAMI-DEFQDTDPVQYRIFDRIY 424

Query: 251  NHP---NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIK 306
                      +L   D       +      +        +  T+   +  +    + D  
Sbjct: 425  RVASNDQDTSLLMIGDPKQAIYGFRGADIYTYLDARRAVSSRTYTLGTNYRSAVAMVDGV 484

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLP-----PDTSDMRNTDILENKIPNIQKCFSDVAL 361
                 +      E          + LP        +  +     +   P      SD   
Sbjct: 485  NRVFSQADASLPEGAFLFRAGDDNPLPFSPVEAKGTSQQWLVNGQPLPPLTFWTLSDERP 544

Query: 362  IEADNEREEAISIAIALRMSLDENKKK-------------------SALITADRNLARRV 402
            I  +  RE       A    L    +                     A++   R+ A  V
Sbjct: 545  IAKETGREAMAEACAAEIARLLNLGQSGDAGFVAEGTPFEPVRPEHMAVLVNKRDEANAV 604

Query: 403  KLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP---LAKFG 458
            +  L  R   ++ +S    +  ++ S  +   L A  +      I   +  P   LA   
Sbjct: 605  RQSLGARGVRSVYLSDRNSVLQSVQSVEMLQWLQACAEPGQLSLIRAALATPTMSLAYQE 664

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                +        E+   +G +  +                                   
Sbjct: 665  LDRLFSDENALDREINRFQGYRELWQQQG------------------------------- 693

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
              + ++  +L          +  +   G   I    +L     Q +  +           
Sbjct: 694  -VLPMLRRLLMDYDVPAKLLSGPDGERGLTDILHIAELLQQDSQQLDGEHALIHHYTEML 752

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            ++        +  +E+ + +                             + ++   +S+ 
Sbjct: 753  QDSDDEDEHRTMRLESDAGL-----------------------------VKVVTVHKSKG 783

Query: 639  LNFDTLILGGLNEGVWPKNTAK-NPFLSRVMQSDLNLKTAEKYIGQA---------AHDF 688
            L +  + L    E    K       +     +  ++L+  E  + +A            +
Sbjct: 784  LEYPLVFLPFATEFREEKPNQAFIKYHDDEGRLQISLEPDEDTLARADRERLGEDIRKLY 843

Query: 689  EMANGTRHLIYTRS----------------LRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                 +RH  +  +                   ++  T    +LQ +           + 
Sbjct: 844  VALTRSRHATWVGASGIKGWRQSGLGHLIGRSASDEDTDLMPFLQSVATDEPAIDVTPMP 903

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ--------------PRTYSFSEIKQL 778
            + G        +          +  +    + +                   S    ++ 
Sbjct: 904  EAGDDVYAGDEEPKLGNALEPVREARENWWIASYSAITYGARGGYGNDFVPASEDAEQEN 963

Query: 779  INDPYAVYARRILKLDFIPHFKKDP-------DRTDRGTLFHNIITELIKKR-------- 823
            + D         L           P         +  GT  H+I+    ++         
Sbjct: 964  LRDEDEPVVADTLAAMIPDWQGPQPVNQHAFPKGSGPGTFLHDILEWCAREGFHKVVNTP 1023

Query: 824  -----------INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI---SHSFLE 869
                         +N  +    +K  I +    +   P                   + E
Sbjct: 1024 DDLHELLERRCKLRNWSDWADTLKTWIYTLITMDIPLPGSRTCSLAGLDTFRPELEFWFE 1083

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGIH----------LTGFADRIDLLKSGFVDITDYK 919
              +    +++++      +  +                L GF D +   + G   + DYK
Sbjct: 1084 SHDVNTLAMDRLVR----RHTLGGDPRPEAHQATFNGMLKGFIDLVFEHE-GRYYVLDYK 1138

Query: 920  TG-----------DNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIR 964
            +               K +  +K  D Q  +   AL     +++        +    Y+ 
Sbjct: 1139 SNFLGEDDQAYIPGVMKAKILEKRYDLQYVIYLLALHRLLKARLPDYDYDSHIGGAVYLF 1198

Query: 965  LKQ 967
            L+ 
Sbjct: 1199 LRG 1201


>gi|284033218|ref|YP_003383149.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
 gi|283812511|gb|ADB34350.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
          Length = 707

 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/507 (9%), Positives = 116/507 (22%), Gaps = 61/507 (12%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           +   +    R    +P+    V     T+RA  E+R    ++           ++     
Sbjct: 53  ITHRIAYGVRTGTYDPV---RVLAVTFTQRAAGEMRGRLAQLGADGV----QARTFHSAA 105

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
             +        Y    P    ++   L                         + +     
Sbjct: 106 LRQARFFWPKVYGSELPPIADRKFPLLTE-----------------AAGRCRVRVDTPAL 148

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
             LA  +    +  +    + +D   +               +      + +  +E    
Sbjct: 149 RDLAGEV----EWAKVSNVRPDDYARIAPRSGRALAAFDPATIARIFAAYEDVKLERGRI 204

Query: 206 SPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                 +  +   AE       ++      ++       P    L++      +   V+ 
Sbjct: 205 DLEDVLLCAVALLAEDERVAAEIRRQYRTFVVDEYQDVSPLQQSLLNLWLGGRDDVCVV- 263

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D       W     ++    +S      HP  ++ KL+                    
Sbjct: 264 -GDPAQTIYSWAGADPENLVRFASK-----HPNATVVKLVRDYRSTP------------- 304

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
                 I         +           + +  +   +    E  +E  EA ++A A++ 
Sbjct: 305 -----QIVDVANKVLDATGSAGLPGRVTLRSQLEPGPEPTYREYSDEVAEADAVARAIQR 359

Query: 381 SLD--ENKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAI 437
             D     +  A++      +   +  L    I  +   A      T        L   +
Sbjct: 360 LKDGGTALRDIAVLFRTNAQSENFEQALAERKIPAVLKGAERFFERTEIRQAAMLLRGQV 419

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
              +    +   V+  LA  G+  +  +      +         +       +     +A
Sbjct: 420 KAGDPGDDLEETVRGVLAGAGWSPEPPAGKGAVRDRWESLSALVTMTSDFAAAHPEAGLA 479

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLV 524
                             +      L 
Sbjct: 480 DLMAELDRRASIQHAPLAEGVTLATLH 506


>gi|327192364|gb|EGE59327.1| ATP-dependent DNA helicase protein [Rhizobium etli CNPAF512]
          Length = 686

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 57/543 (10%), Positives = 133/543 (24%), Gaps = 61/543 (11%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAI--------QELRSEFIEITGKKSTILPIIKS 80
           TL     +  +       + +   ++RA         +  R       G  +  L    +
Sbjct: 42  TLAHRVAHLIVKGADPRRILLMTFSRRAAAEMARRVERICRDVLGTNAGVMADALAWSGT 101

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
              +       D      L+   +   R    A LI + R+ L     +    +  +   
Sbjct: 102 FHGIGARLLR-DYAQQIGLDADFTIHDREDS-ADLINLIRHDLGFSKTESRFPAKGTCLA 159

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                             I +     E            W       L+     + E   
Sbjct: 160 ------------------IYSRAVNSETALDQVLRDAFPWCAAWEKQLRELFACYVEAKQ 201

Query: 201 ELNASSPVGYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             N        +   +   E ++          +++     +    A ++  +     G 
Sbjct: 202 SQNVLDYDDLLLYWAQMVGESVIAEDIGSRFDHVLVDEYQDTNRLQASILMALKPQGQGL 261

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V+   D       +   T ++     +  +    P  ++  L               + 
Sbjct: 262 TVV--GDDAQSIYSFRAATVRNILDFPAAFS----PPANIVTLDRNYR----------ST 305

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
              +   + VI  +      +        E              L+   +E ++A  +A 
Sbjct: 306 QPILTAANAVIDLASERFTKNLWTERQSSERP-----------RLVTVRDEADQARYVAD 354

Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +  + +E    K+ A++    + +  +++ELTR  I      G+    + H   + + L
Sbjct: 355 KVLDNREEGLKLKQQAVLFRASHHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAAL 414

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                  D +A   L++          +                          +     
Sbjct: 415 RFAQNPRDRVAGFRLMQILPGVGPSTAQKALDLMAEDASPLSALAAMPAPPRSGEDWTAF 474

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               Q+  +    W + +    +  A  L        T        +    G  S   + 
Sbjct: 475 VSMLQEMKSGKAGWPAEIELARQWYAPHLERLHEDAATRQADLLQLEQIAGGYASRERFL 534

Query: 555 KLT 557
              
Sbjct: 535 TEL 537


>gi|311898266|dbj|BAJ30674.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054]
          Length = 766

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 69/746 (9%), Positives = 153/746 (20%), Gaps = 80/746 (10%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           A V     T RA  E+R    ++           ++       +       +        
Sbjct: 77  AQVLAVTFTARAAGEMRGRLRQLGADGV----QARTFHSAALRQLQYFWPRAVG------ 126

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                 E  RL+      + +           +        I  AK    + D       
Sbjct: 127 -----GEFPRLLERKVQLVAEAAGRTGLRVQRTELRDLTAEIEWAKVTQIVPDDY----- 176

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
               L     E                   + E              +       +    
Sbjct: 177 -PTALAKSGREAPRDPAETV-----RVYHGYEELKRTRGLIDFEDVLLLTAAVLEDRPEV 230

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +       +       P   RL+        GA +    D       +   T    
Sbjct: 231 AERVRSQYRHFTVDEYQDVSPLQQRLLEQWTGGDGGASLCVVGDASQTIYSFTGATPDHL 290

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      HP  ++ KL+       + V                             
Sbjct: 291 LNFR-----HRHPGATVVKLVRDYRSTPQVVH------------------LANGLLAQAR 327

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRN 397
                   ++ + ++   +    E  +E  EA S A  +R  L    +  + A++    +
Sbjct: 328 GQAAQHRLELVSQREAGPEPVYREYQDEPTEAESTARLIRDLLGTGVRASEVAVLFRTNS 387

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSS----ILTSLLNAIFKLNDFMAIATLVKHP 453
            +   +  L   GI   +                 +L     A        A        
Sbjct: 388 QSEVYEQALADLGIAYQLKGAERFFERPEVREAGVLLKGAARAADDPLTAGA------PD 441

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV-LDRIATQKNNTHVPHWQSRL 512
           LA              A    +    +    +  L  L      A   +           
Sbjct: 442 LAAQVRAVLATRGFTPAPPSGSGAVRERWESLNALVRLAGEFETARTADGLGADLAAYVA 501

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
             + +  A          +  L   K  +      + +S+ T   +    +  ++E R+L
Sbjct: 502 ELDARAAAQHAPAVEGVTLASLHAAKGLEWDAVFLVGLSEGTLPIIYAKTDEQVEEERRL 561

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
             +      + L+  ++     G         ++D +     G            +    
Sbjct: 562 LYVGVTRARRFLTLSWALSRSPGGRASRKPTRFLDGLRPG-SGSPGARGRGGRGGVEPGA 620

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
              +   +    +   + E                ++      +              A 
Sbjct: 621 ERPAARRSRGGPVKCRVCERTLTDGREL------KLRRCEGCPSTMDEALYERLREWRAV 674

Query: 693 GTRH------LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
             +       +++T +        +     +   + G      +        L      +
Sbjct: 675 KAKEQSVPAYVVFTDATLMAVAEDVPGSRAELSRISGVGAMKLDKYGADVLLLCAGESPE 734

Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSF 772
              +        P           S 
Sbjct: 735 PAGETEPESERAPSGDEADDQAGNSV 760


>gi|91782971|ref|YP_558177.1| exodeoxyribonuclease V, beta subunit [Burkholderia xenovorans LB400]
 gi|91686925|gb|ABE30125.1| Exodeoxyribonuclease V, beta subunit [Burkholderia xenovorans LB400]
          Length = 1230

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 80/798 (10%), Positives = 185/798 (23%), Gaps = 61/798 (7%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAG 234
            W  L   +L  A      R       S       L RA A H      ++      +I  
Sbjct: 339  WLSLVQTWLDYAPAELVARKRTRRVVSFDDLLSNLYRALAAHPWLADALRARYPAALIDE 398

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
               + P    + S +        +    D       +      +        +       
Sbjct: 399  FQDTDPLQFAIFSRIFAPAG--PLFLVGDPKQAIYSFRAADLHTYLAAREAASACYTLAV 456

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            +       ++      +   +           +                  + +I  + +
Sbjct: 457  NQRSTAPIVEACNRLFEANPHAFVLDGLDYQPVRAGERRRPPFSDPQASAGDFRIWTLPQ 516

Query: 355  CFSDVALIEADNEREEA--ISIAIALRMSLD---------ENKKKSALITADRNLARRVK 403
              + +   EA  E  EA    I   LR + +               A++         +K
Sbjct: 517  GDAALNKREAQREASEACAAEIVRLLRGAREGTVTIGDVPLAPGNIAVLVQTHKQGSLIK 576

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L  +G+     A   +  T  +  +  +L A+    D   +   +            +
Sbjct: 577  RVLAAWGVGSVELAQASVFATPDAEQIERVLAAVDTPGDLRRLRAALATDWLGLDAAALW 636

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN---------THVPHWQSRLSE 514
                       A      +  +  ++     R    +             +   Q  ++ 
Sbjct: 637  RLEQVADAPSPADDPAHAADAMGWVERFSRYRTLWHERGFAVMWRTLMRELRVAQRLVAG 696

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             D E  +  V+H+ + +      +     T   L+              +  D +     
Sbjct: 697  PDGERRLTNVNHLAELVQARAATQPGIAPTLRWLAAQRTQGGGEEAQLRLESDRNLVQIV 756

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT----RLIDGETVKPKIEKSSTLFI 630
               + +G   + +F   +  G+  +  +    D                   E++     
Sbjct: 757  TVHKSKGLEYAVVFCPFLNDGALREPPSSGLPDAREYHDETGTAVLHYGCDDEEAEHASR 816

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF-- 688
                E        + +  L   V+        + S     +         +G + H F  
Sbjct: 817  YAVREQAAERARLVYVA-LTRAVYRCYLVAGTYQSSRSTRESRRSVLNWLVGGSGHGFDD 875

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWL----QRLLVLGGTDFFDNLKKRGQCYLDW--- 741
             +A        +   +      I  + L    +R+ +    D   +++ R          
Sbjct: 876  WLAEPPDEAALSARWQALAGGPITLQPLPKPERRVPLESLQDRSAHMQARANRRPLRDQW 935

Query: 742  ---------TRKLDYTTKQPHYKRPKPFPPLEAQP---RTYSFSEIKQLINDPYAVY--- 786
                                  +  +P     A             +    D    +   
Sbjct: 936  RMASFSGLIAAGSKADEAHTPVEEVRPDHDEIADVLVVTPAPAPHPQAHAEDDILAFPRG 995

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            A     L  +       +           + E       +    +  +M  ++      E
Sbjct: 996  AAAGDCLHRMFELADFTEPPTWTDAIRGALRERPAPAAPELAARLPAMMHNLLRDVVATE 1055

Query: 847  NLPPHIDIIWRHLFH-KISHSFLEHEEKIQSSIEKIFVNIPA-KMAIESIGIH--LTGFA 902
              P                            ++ ++ +      +A+E   +   + GF 
Sbjct: 1056 LQPGMRLADLDPRRRLNELEFLFAAPSLDFPALRELLIEHGYPDVALEPGVLRGFVKGFI 1115

Query: 903  DRIDLLKSGFVDITDYKT 920
            D I     G   I D+K+
Sbjct: 1116 DMIVEH-DGRFWIVDWKS 1132


>gi|120552955|ref|YP_957306.1| exodeoxyribonuclease V, beta subunit [Marinobacter aquaeolei VT8]
 gi|120322804|gb|ABM17119.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Marinobacter
            aquaeolei VT8]
          Length = 1241

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 84/833 (10%), Positives = 190/833 (22%), Gaps = 120/833 (14%)

Query: 173  KNEKYGMWWLLAADFLKIASKY---WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
               ++   W+ A    +   +    + + L  L+ +        L               
Sbjct: 350  DILRHASHWVAARLEAEKQQRSEMGFDDLLTRLDDALHGPRGDQLAATIRRQFPVA---- 405

Query: 230  IIIAGSTGSIPATARLMSTVANHP---NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286
             +I     + P   R+ + + N         +L   D       +      +        
Sbjct: 406  -LIDEFQDTDPVQYRIFNRIYNVEANQPDTCLLMIGDPKQAIYGFRGADIHTYLQARLGV 464

Query: 287  TYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT--- 342
               T+   +  +  D +        +     S +          + LP  +     T   
Sbjct: 465  QARTYTLGTNYRSADTMVSGVNRVFEYSDQQSPKGAFLFGNGDSTPLPFQSVAANGTKRL 524

Query: 343  -------------DILENKIPNIQKCFSDVALIEADNEREE--AISIAIAL--------- 378
                            E+   + +     +A   A  +  E  A  IA  L         
Sbjct: 525  WAVNGEIQPSLVFWTHESGEEDKEGNPKGLAKGTATADVAETCASEIARLLTLGQAGQAG 584

Query: 379  -------RMSLDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSIL 430
                              A++  +RN A  V+  L  R   ++ +S    + T+  ++ +
Sbjct: 585  FVLPDNPADLEPVEPSDIAVLVNNRNEAAAVRDALGRRRIKSVYLSDRDSVLTSREANEV 644

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
               L A  +      I   +  P     +           +    +   +        + 
Sbjct: 645  LCWLRAFAEPRQLAFIRAALATPTLGQSWQALDRLLTDELILEREIERFQRYQQQWQSQG 704

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            ++    +   +         R   E +             +T ++            L  
Sbjct: 705  VLPMLRSFLMDFEVPGRLLQRPDGERR-------------LTDILHIAELLQQDSLQLDG 751

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
                    T +     +E          + G  L  + +     G       + +     
Sbjct: 752  EHALVHHFTQILRAADEEDEHRTLRLESDAG--LVKVITVHKSKGLEYPLVFLPFGTAFR 809

Query: 611  RLID-GETVKPKIEKSSTLFILGTLESRLLNFD-----------TLILGGLNEGVWPKNT 658
                    V+   +    + +       +   D            + L       W    
Sbjct: 810  AENPKQAYVRYHDDTGKLVTVFDPTPEDIERADQERLGEDIRKLYVALTRARFATWVGAA 869

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT------------------ 700
            A + +    +   +   T E+ I QA     +A G   +  T                  
Sbjct: 870  AVDNWYQSGLGYAI-AGTPEQPISQA--LASLAQGRPEIRITPLPEAGNTIFTETAPEAL 926

Query: 701  RSLRENNIPTIASRWLQ-----RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                 +N       W+          + GT      +       +   +           
Sbjct: 927  GPALISNREAKEDWWIASYSTIEYTGMAGTGITFTGEVEDAQTQNLLEESAQDDTDEAPP 986

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLIN-DPYAVYARRILKLDFI-PHFKKDPDRTDRGTLF- 812
             P               + + +L+       + R +   + +     +       G    
Sbjct: 987  VPAVRNHHHFPKGAGPGTFLHELLEWCTAQGFQRVVDNPELLHEQLSRRCGTRGWGDWIE 1046

Query: 813  ---HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
               H ++  + K        E    + Q ++S   +         +  H   K+   +  
Sbjct: 1047 PLQHWLLELIRKPLRLDRNGEDTASLAQ-LESLRPELEFWFESRNVSIHTLDKLVTRYTL 1105

Query: 870  HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922
            +                           L GF D +   K G   + DYK+  
Sbjct: 1106 NGADR-----PRAEANRFNGM-------LKGFIDLVFEHK-GQYYVLDYKSNA 1145


>gi|23013594|ref|ZP_00053471.1| COG0210: Superfamily I DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 640

 Score = 52.6 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 62/615 (10%), Positives = 139/615 (22%), Gaps = 89/615 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGK--------KSTILPIIKSLGDVVEEKFTADLLLS 96
             + +   T RA  ELR                 +   +P I +L  +            
Sbjct: 60  PRIFVSTFTSRAALELRGRIGARLAGLGRDVEPERFGRMP-IGTLHGMALRLLQRHPPPG 118

Query: 97  YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156
                          +A   L   +                L  + A A   AKN +D++
Sbjct: 119 CPRFRVFDEQACARVIAHHRLYLSDDTRKPTDVFGAYKDRLLSPAAALAEAKAKNDSDLL 178

Query: 157 DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
           +  E                                  + + L            + L+R
Sbjct: 179 EAAEAYG------------------------------RYQQALAGEGGFDFGDLIMELVR 208

Query: 217 AEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
              E       + G    ++I       PA  R++  +     GA +    D       W
Sbjct: 209 GMEEDEDYRARISGFFDHLLIDEYQDINPAQERMLRLL--RAQGARLWAVGDDDQCLYAW 266

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
            +          +         Y L++         E    L   +   + +  V   + 
Sbjct: 267 RSADPAFILGFETAWPNPA--LYRLSRNYRSTATIVEAASALIGANRRRHAKDQVPHSAS 324

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKKKS 389
                                      + +   D++  EA  +   +           + 
Sbjct: 325 RLA------------------------LTIAGLDDDEAEADYVLRVVQGLAGRGMPWHEM 360

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A++    ++  R+++ L   G+ + +             ++  L   +    D  A A L
Sbjct: 361 AVLYRAGHVGSRIQIRLAEAGVPLVVRGSGEFWQLGPVRLVAGLARLLADPQDMDARAVL 420

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
                   G     L           +        +  L S        +        + 
Sbjct: 421 ------GHGKRVDKLLSQAPEKIDTDVPWPALCRQVGRLVSATARPPGEEGLQWRDLAFT 474

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST---------CGNLSISDWTKLTVTC 560
           +     + E A      + +    L   ++  ++              S           
Sbjct: 475 AADLAAECEGAAAFTALMEEQRRSLRRAESGGDAVVLSTIHGAKGLEWSAVVVAGCEADL 534

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
           + +    +  +   L +    +    L            A +    +++  L + +    
Sbjct: 535 MPHESSPDLEEERRLMYVAATRAKRWLVLSFAAERRKAAAPSPYIAEMLRGLAEDQIRYH 594

Query: 621 KIEKSSTLFILGTLE 635
             +    L       
Sbjct: 595 DPQSRERLHAGPPKP 609


>gi|332671042|ref|YP_004454050.1| exodeoxyribonuclease V subunit gamma [Cellulomonas fimi ATCC 484]
 gi|332340080|gb|AEE46663.1| exodeoxyribonuclease V, gamma subunit [Cellulomonas fimi ATCC 484]
          Length = 1138

 Score = 52.6 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 73/818 (8%), Positives = 193/818 (23%), Gaps = 66/818 (8%)

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
           L D  ++   A  +             R   LA+ +             +          
Sbjct: 119 LDDHADDPLLAAPVHHLGARDDAMRQGRRFGLAQHVAHLLAAYDVQRPTVVRAWADGRDE 178

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
             A A   A                                      L   +  W     
Sbjct: 179 DGAGAPLPAD-------------------------------------LAWQAHLWRLVRA 201

Query: 201 ELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                SP       +   A      +    + + G+T    A  R++  +A H +  + L
Sbjct: 202 RAAVPSPAQRIDEAVAMLASAPDTVSLPARLSVLGATRLPDAHVRVLDALARHRDVHLWL 261

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
           P     +   +    +  +                S+A     L I+   V     +   
Sbjct: 262 PHPSLRLWERV-GAASPPAGRRRDLPPVAEHPLLASMAGDAVELQIRLRAVDAQVILHAA 320

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA--ISIAIA 377
               +  +                  +  + ++      V      + + E    ++   
Sbjct: 321 ADPPATALGHLQRRLRADAAPTEAAAQRPVVDVGDRSVQVHACHGRSRQVEVMREAVLGL 380

Query: 378 LRMSLDENKKKSALITADRNLARRVKLEL-------------TRFGINIDISAGIPLSTT 424
           L        +   ++  D      +                     + + ++   P    
Sbjct: 381 LADDPSLEPRDVVVMCPDVEAFAPLVSAAFGAGSTGGTQWEHPGRSLRVRVADRAPARAN 440

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVK----HPLAKFGFPEKYLSRAKNALELVALRGNK 480
              + +++LL+         A+  L          +    +    RA      V    + 
Sbjct: 441 PLLAFISTLLDLAASRVTASAVVDLAGLAPVRHRFRLDDADLDRIRAWALESGVRWGEDV 500

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
              D   L S+     +   +   +    +   +      + + D     +  +      
Sbjct: 501 ARRDRFRLGSVPQGTWSGALDRLLLGVAMAEEDQRYVGAVLPVDDVGSTDVDLVGRLAEL 560

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEH---RKLPNLWFEEEGKTLSSLFSKIIETGSC 597
            +     L   D T+     L  +           P   +++          +       
Sbjct: 561 LDRLTAVLHALDGTRPATAWLDTLTAALDLLTDVAPADRWQQVEALRVLGEVRTSAAQHD 620

Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                 + + ++   + G   +    ++  L +      R +    ++L GL++G +P+ 
Sbjct: 621 RDLRLPDVVAVLEPHLRGRPTR-AGFRTGALTVCSLEPMRAVPHRVVVLLGLDDGAFPRG 679

Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
             ++      + +   L        +    F  A  +            +  T A+R   
Sbjct: 680 HGRD---GDDLLAREPLVGERDRRAEDRRLFLDAVTSATDHLLVVHSGADERTGATRPAA 736

Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
             +        D +             + +  +    +           P ++   ++  
Sbjct: 737 VPVGELLDALDDAVVFPDGLPAREHVVVHHPLQTVDERNFVGGALGRPGPFSFDALDLAA 796

Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
                     RR   ++ +P  +   D  D   +  + +   +++R+    P     +  
Sbjct: 797 ARAGRAVRAGRRPFLVEPLPPVEPLDDVGDVADVLTHPVRAFVRRRLRAMPPGDAPQLDD 856

Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKI-SHSFLEHEEKI 874
            +    +        D +           + +  E + 
Sbjct: 857 RLPLQLDGLERWEIGDRLLDAALTGADLTTAVAAERRR 894


>gi|323525707|ref|YP_004227860.1| exodeoxyribonuclease V subunit beta [Burkholderia sp. CCGE1001]
 gi|323382709|gb|ADX54800.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1001]
          Length = 1235

 Score = 52.6 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 84/871 (9%), Positives = 202/871 (23%), Gaps = 137/871 (15%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAG 234
            W  L   +L  A      R       S       L RA A H      ++      +I  
Sbjct: 337  WLELMQSWLDYAPAELAARKRTRRVVSFDDLLSNLYRALAAHPWLADALRARYPAALIDE 396

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
               + P    + S +        +    D       +      +     ++ +       
Sbjct: 397  FQDTDPLQFAIFSRIFAPAG--PLFLVGDPKQAIYSFRAADLHTYLAARASASARYTLAV 454

Query: 295  SLAKLLDFLDIKREDVKRLGNV--SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
            +       ++      +        + +  + +   +    P           + +I  +
Sbjct: 455  NQRSTAPIVEACNRIFEANPQAFVLDGLDYQPVRAGERRRAPFFDPDGGAGAGDFRIWML 514

Query: 353  QKCFSDVALIEADNEREEA--ISIAIALRMSLDEN---------KKKSALITADRNLARR 401
                + +   EA  E  EA    I   LR + +               A++         
Sbjct: 515  PPGETALTKREAQREASEACAAEIVRLLRGAREGKVTIGDAPLAPGNIAVLVQTHKQGSL 574

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            +K  L  +G+     A   +  TL +  +  +L A+    D   +   +           
Sbjct: 575  IKRVLAAWGVGSVELAQASVFATLDAEQIERVLAAVDTPGDLRRLRAALATDWLGLDAAA 634

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
             +                  + D       +       +  T        +        +
Sbjct: 635  LWRLEQTAD-------APAVADDPAHAADAMGWVERFSRYRTLWHERGFAVMWRTLMREL 687

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             +   ++             +      + +   +     L+ +              EE 
Sbjct: 688  RVAQRLVAAPDGERRLTNVNHLAELVQARAATHQGIAPTLRWLAA-----QRAQGGGEEA 742

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            +        +++  +  K+  +E+  +    ++   ++     +    +    E      
Sbjct: 743  QLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPSSA----LPNAREYHDPCG 798

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYT 700
            D ++  G ++                 +      T E+   +A   +             
Sbjct: 799  DAVLHYGCDD--------------EEAERAARHATREQAAERARLVYVALTRAVYRCYLV 844

Query: 701  RSLRENNIPTIASR-----WLQRLLVLGGTDFFDNLKKRGQ---CYLDWTRKLDYTTKQP 752
                +++  T  SR     WL         D+        +    +             P
Sbjct: 845  AGTYQSSRSTKESRRSVLNWLVAGAGHDFDDWLAEPPGEAELSSRWQALAGGPLAVQPLP 904

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLIND------------------------------- 781
              +R +P   ++ +         ++ + D                               
Sbjct: 905  KVERRQPLESMQDRGAEKRARTHRRPLRDQWRMASFSGLIAAGSKAEEAQPAVEEVRPDH 964

Query: 782  ------------PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL---------- 819
                        P    A + +           P     G   H +              
Sbjct: 965  DEIADELVVTPQPLLAPAAQQISSLAADDILAFPRGAAAGECLHRMFELADFSDPHSWPD 1024

Query: 820  -----IKKRINKNTPEINHLMKQIIDSHFE-----KENLPPHIDIIWRHLFHKISHSFLE 869
                 +++R    +PE+   +  ++          +      +  +              
Sbjct: 1025 AIRGALRERPAPASPELAPRLPAMMHKLLADVVSTELVPGMTLGQLDPRRRLNELEFLFA 1084

Query: 870  HEEKIQSSIEKIFVNIPA-KMAIESIGIH--LTGFADRIDLLKSGFVDITDYKT------ 920
                  +++  + V      +A+E  G+   + GF D I     G   I D+K+      
Sbjct: 1085 APSLDFTALRGLLVEHGYPDVALEPGGLRGFVKGFIDMIVEH-DGRFWIVDWKSNHLGDT 1143

Query: 921  ----GDNPKKETAQKL-IDPQLSLEAAALKA 946
                G  P +          Q  L   AL  
Sbjct: 1144 AQDYGAAPLEAAMASHAYHLQALLYTVALHR 1174


>gi|221069391|ref|ZP_03545496.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni KF-1]
 gi|220714414|gb|EED69782.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni KF-1]
          Length = 1270

 Score = 52.6 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 81/798 (10%), Positives = 175/798 (21%), Gaps = 94/798 (11%)

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTIT--------EKST 279
            +I     + P   RL   +    + +    +L   D       +            + + 
Sbjct: 407  LIDEFQDTSPLQYRLFDQIYRTADNSTDSALLLIGDPKQSIYGFRGADIYSYLQARQATE 466

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                   T     Q  +  +  +             +        +             +
Sbjct: 467  GRHYVLDTNFRSTQALVDAVNQWFVQAEVREGEGAFLFRAGQSNPLPFESVKSNGRKERL 526

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---------------DE 384
                     +       S   L   D  R  A   A  +   L                 
Sbjct: 527  MQGSQRMAALTVAWDGSSGEPLSNDDIRRRGAEFCASQIVQWLMDGATGFAEDGQPLQRL 586

Query: 385  NKKKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
                 A++      A  V+  L R  +  + +S    +  +  +  L   L A+    D 
Sbjct: 587  RPADVAVLVRTGKEATAVRRALARRNVASVYLSDQDSVFASGEAQDLLLWLRAVAAPLDA 646

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            +A+   +  P+    F E     + +          K  + +     ++     T     
Sbjct: 647  LAVRAGLATPMMGLSFDELAWLASDDEAFDARSELLKELHSLWLRLGVLAMLRQTLYRFE 706

Query: 504  HVPHWQSRLSEEDK-ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                W   +  E +    + L + +      L   +         +              
Sbjct: 707  LPARWLQDMGGERRLTNYLHLAELLQGASAQLEGEQALIRWLATQIESPGAAGDAQIVRL 766

Query: 563  NVCLDEH-----------------RKLPNLWFEEEGKTLSSLFSKIIETGSCIKA----- 600
                D                         +   +GK         I+     +      
Sbjct: 767  ESDADLVKVVTVHKSKGLEYPLVCLPFGGSFRPVDGKAAYLSLPVQIDGAPARELVLDYD 826

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
            +A        RL +   +           +   L                   +    A 
Sbjct: 827  DAQLAQADKERLREDLRLLYVALTRPRHALWMGLAPMKRGSSKNCANEQGAAGYLLAGAV 886

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
            +   +    S   L      I       E+   +R++           P   +++ +R  
Sbjct: 887  SQSAAGWRASIQALSERCTEIAVVDLPAELPVASRYVAAQALPALAAAPVYEAQFDRRWG 946

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
            +   +     +       L    +     ++    +      L+        + +  L  
Sbjct: 947  IGSFSSLTRAMAAPSLPVLPVAAQSPAEDERALQAQEAGEAALDLGVINDVMTALPTLSR 1006

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK----RINKNTPEINHLMK 836
                  A           F + P     G   H+ +  L  +    +   +      L  
Sbjct: 1007 ----FAAGARSDAAVWHRFMRGP---VVGNFLHDQLEWLAAEDFALQAQDDPDNSEPLAA 1059

Query: 837  QIIDSHFEKENLPPHIDIIWRHLF-------------------HKISHSFLEHEEKIQSS 877
            +++             D++                          +           + S
Sbjct: 1060 RLLRRCERAGRKEQAADVLQWLRAVVHQPLAPLGVSLAQLGEGDALLPEMEFWLPARRLS 1119

Query: 878  IEKIFVNIPAKM-------AIESIGIH--LTGFADRIDLLKSGFVDITDYKTGDNPKKET 928
               I       +       A+    +H  L GFAD +     G   + DYKT    +   
Sbjct: 1120 APHIDALCRRHILPGQPRPALPERELHGMLMGFADLVFHHA-GRYWVLDYKTNHLGQDAA 1178

Query: 929  AQKLIDPQLSLEAAALKA 946
            A        +LE A L+ 
Sbjct: 1179 AYGPG----ALEQAMLEH 1192


>gi|183602119|ref|ZP_02963487.1| hypothetical protein BIFLAC_07692 [Bifidobacterium animalis subsp.
            lactis HN019]
 gi|241191351|ref|YP_002968745.1| hypothetical protein Balac_1334 [Bifidobacterium animalis subsp.
            lactis Bl-04]
 gi|241196757|ref|YP_002970312.1| hypothetical protein Balat_1334 [Bifidobacterium animalis subsp.
            lactis DSM 10140]
 gi|183218612|gb|EDT89255.1| hypothetical protein BIFLAC_07692 [Bifidobacterium animalis subsp.
            lactis HN019]
 gi|240249743|gb|ACS46683.1| hypothetical protein Balac_1334 [Bifidobacterium animalis subsp.
            lactis Bl-04]
 gi|240251311|gb|ACS48250.1| hypothetical protein Balat_1334 [Bifidobacterium animalis subsp.
            lactis DSM 10140]
 gi|295794344|gb|ADG33879.1| hypothetical protein BalV_1291 [Bifidobacterium animalis subsp.
            lactis V9]
          Length = 1517

 Score = 52.6 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 6/58 (10%)

Query: 892  ESIGIHLTGFADRIDLL----KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
            +   + + G  DR++            + DYKTG++          D QL      L 
Sbjct: 1308 DGQEVQINGRIDRLERRRFDNGDEHWRVVDYKTGNSFSPAEQFS--DLQLVCYQLGLA 1363



 Score = 43.8 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 66/748 (8%), Positives = 168/748 (22%), Gaps = 89/748 (11%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           L   T +   R         ++V   VP +R         I   G    + P   +L  +
Sbjct: 62  LAVETTLAGLRAGLAAGDDGSTVM-LVPNRRVADLYSDRIIRELGSSERVRP-ATTLNAL 119

Query: 85  VEEKFTADLLLSYN-LNPPVSNIQRLLEL---------------------ARLILIWRNK 122
             +        S +     ++  ++   L                      RL+  +   
Sbjct: 120 AFQLLEIARSRSGDSAPRLINGAEQDALLRHVIAVHVEQHRRGEDGSCETCRLLSAYFED 179

Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNL----------------------ADIIDIIE 160
                         +   S A  +  A  +                      A  I  + 
Sbjct: 180 AGVQAPPARKGVGAAANSSSAGTLDWATIVMDAADANDADEETIADIAANVNAGFIAQLR 239

Query: 161 TEEKKWEDLHALKN---------EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
                ++++ AL            +    W +      + S+      + L     +  +
Sbjct: 240 DVFAHFDEVGALLRLGAMQPTAAARNVEEWTMQVACQAVESEGPAGVRLSLQWRLALALR 299

Query: 212 IALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPN------------ 254
                  A        +  +  P+    S     A    +  V +  +            
Sbjct: 300 REYFDLVARRYPGEYRLDPSYLPLAAMRSLTVAGAWMPTLLVVDDVQDLTLGGLALLAVL 359

Query: 255 ---GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
              G  ++   D       +     +       +        +   +          D+ 
Sbjct: 360 QGLGVHLVLFGDPDEAVQAFRGSYPEYLYARFLDPNGPFAADHVSLQAFQHEPATYRDIV 419

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK-----CFSDVALIEADN 366
                 +        +  +  P     +  +D L     N            +      +
Sbjct: 420 ASRVSLSIASAEESSLPLAQRPGKLPAVEGSDRLRPLDANDPHTKKVLEDGSLNGRLYRS 479

Query: 367 EREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAG-IPL 421
             +E  +I   +      ++       A+I  D     R    L    + +  S+   PL
Sbjct: 480 ANDELDNIVWQISALHLNDRNVTWNDMAVICHDNADVLRFGERLRGADVPVRYSSVTRPL 539

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
           +       L +L+         +   ++     A++             ++   +  N  
Sbjct: 540 ADEPFVQGLFALIELAQLRAHGLETRSMTLAAAAQYVRARVGRIAESLLIDTANMGTNTI 599

Query: 482 SYDIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQCITPLVTYKT 539
           +  +   +      R+ T           +R+S+ D  + A    D     +   V    
Sbjct: 600 NAHVRSHRKPTRPMRLNTVNAALSSLEALARISQTDILDDASATADPDRSALAESVKASA 659

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
             +      +++   +      +               ++ G  L      +    +   
Sbjct: 660 LSDLRSQWDALASTVRAAHAAQEQASGIVVDDSRLSDTDKVGDGLEFGIDALYLLLAQG- 718

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
            +    +D++  L        +        +    +             L       + A
Sbjct: 719 -DDETLLDVLEALCGDHNEDVRNFNLLWRIVGQIADDLGSLPSKAPQYALEAAWKACHVA 777

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
               +  +  S       ++        
Sbjct: 778 DAWKVQAIFDSPDGRAANDRLDTAMRLF 805


>gi|241662649|ref|YP_002981009.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240864676|gb|ACS62337.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 587

 Score = 52.6 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 76/282 (26%), Gaps = 28/282 (9%)

Query: 20  EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
            +  +    TL         + + L+ + +   +  A+  L+               ++K
Sbjct: 25  AVAGSGKTRTLCARAGRLTDDGVPLSDILVLTFSNNAVNVLKERLPARI--------LVK 76

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139
           +               S  L P +  + R  EL    L    K   +++     S  +  
Sbjct: 77  TFHAFALSVVK-QATGSVKLKPQMLPLARRAELFSGALCTYPKTCSLVRRRTGVSLNTKG 135

Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA--ADFLKIASKYWTE 197
                     K L +  D     +   +    L  +    +   A     L+   + + +
Sbjct: 136 E--------RKRLLEFFDRCNGSD---DVAARLVQDAGSGFACYAGMLAELRKIRRAYDK 184

Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
           R+    A          +              +++  +        RL++ +A      +
Sbjct: 185 RMERAGAIDFSTMLTRAIPL--CDTASLPFKHLLVDEAQDMTDDQMRLLAGLARRIPNVM 242

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
           V    D       +  +   + N+  +     T P     +L
Sbjct: 243 VF--GDPRQAIYGF--LGGHAGNLRDALRDAVTMPLSRSFRL 280


>gi|215402402|ref|ZP_03414583.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis
           02_1987]
 gi|289744345|ref|ZP_06503723.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           02_1987]
 gi|289684873|gb|EFD52361.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis
           02_1987]
          Length = 1094

 Score = 52.6 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 72/844 (8%), Positives = 174/844 (20%), Gaps = 167/844 (19%)

Query: 185 ADFLKIASKYWTER---LVELNASSPVGYQIALMRAE---AEHLMKGTKGPIIIAGSTGS 238
             F     +    R   L     +  +      + A    A   M+     +++     +
Sbjct: 208 LRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPARDRMRERWRIVLVDEFQDT 267

Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
            P   R++    +  +  I++   D       +      +    +               
Sbjct: 268 DPMQWRVLERAFSRHSALILI--GDPKQAIYGFRGGDIHTYLKAAGTADAR--------- 316

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
               L +     + L      +  R   +  + +    +D  +        P        
Sbjct: 317 --YTLGVNWRSDRALVESLQTV-LRDATLGHADIVVRGTDAHHAGHRLASAPRP--APFR 371

Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
           + +++                                  L R +  +L      +  S  
Sbjct: 372 LRVVKRHT------------------LGYDGTAHVPIEALRRHIPDDLAADVAALLASGA 413

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
                 + ++ +  ++                  P    G  + + S+A           
Sbjct: 414 TFAGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAA---------- 463

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                 +  L++    + +          +    +E        L D +   +     + 
Sbjct: 464 ---KDWLCLLEAFDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHA 520

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
            ++       +              +     R L     E +   L+ +   + E     
Sbjct: 521 RHRGVAAVFQAA------------QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRE 568

Query: 599 KANAIEWIDIITRLIDGETVKPKI-----EKSSTLFILGTLESRLLNFDTLILGGL---- 649
           +       D + R        P+        ++ + I+    ++ L F  + L       
Sbjct: 569 RLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRN 628

Query: 650 ---------NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
                    ++                 ++   L   E         +      +  +  
Sbjct: 629 VRSDDILLYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVA 688

Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT------------------ 742
                 +        L R    G +   D    R      W                   
Sbjct: 689 WWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVI 748

Query: 743 ---RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI----------------KQLINDPY 783
                L+     P ++       ++   R  S+S++                 +      
Sbjct: 749 GARSSLEKPVPVPGFEVRHFHRRIDITWRRTSYSDLVRGSEAVTVTSEPAAGGRADEVEI 808

Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN--TPEINHLMKQIIDS 841
           AV A      D        P     G+L H ++        +                  
Sbjct: 809 AVVAAPGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTV 868

Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH---- 897
             +   L P +      +               Q  +      +  +M +    +     
Sbjct: 869 DVDHAQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSP 928

Query: 898 -----------------------------------------LTGFADRIDLLKSGFVDIT 916
                                                    L G  D +  L      + 
Sbjct: 929 DVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVV 988

Query: 917 DYKT 920
           DYKT
Sbjct: 989 DYKT 992


>gi|254384596|ref|ZP_04999935.1| hypothetical protein SSAG_04320 [Streptomyces sp. Mg1]
 gi|194343480|gb|EDX24446.1| hypothetical protein SSAG_04320 [Streptomyces sp. Mg1]
          Length = 262

 Score = 52.6 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 30/221 (13%)

Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                    +  +    W R LD    +   +R +        P   S S++ +L  D  
Sbjct: 17  APSPRGLTPEEARAVASWDRDLDALEGE--LRRARAVVRDVPLPSALSASQLLRLAADEQ 74

Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT-ELIKKRINKNTPEINHLMKQIIDSH 842
           A       +    P  +       +GT FH  +     +  +               D  
Sbjct: 75  AF-----ARDLARPMPQPPQPAARQGTRFHAWVESRFDELPLPLLDVLDPETELPGGDQE 129

Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
              E     +                  E    +      + +P ++ +      + G  
Sbjct: 130 IADEADLDSLKA--------------AFERSDYAERTPHRMEVPVQLTLAGR--VIRGRI 173

Query: 903 DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
           D +     G  +I D+KTG +   +        QL++   A
Sbjct: 174 DAVYANPDGTFEIVDWKTGRSTDADP------LQLAVYRLA 208


>gi|297565831|ref|YP_003684803.1| hypothetical protein Mesil_1402 [Meiothermus silvanus DSM 9946]
 gi|296850280|gb|ADH63295.1| conserved hypothetical protein [Meiothermus silvanus DSM 9946]
          Length = 769

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/373 (9%), Positives = 87/373 (23%), Gaps = 50/373 (13%)

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
             +    +       +         L+      +   +  +         L ++D+ +  
Sbjct: 299 EGRLLLSLLELPDYPTPSKLLAIPELLPLGRAALERGLAGREPIGRLAAELGLADFWQSW 358

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
           +  L+            L    +               +   A+   +      LI    
Sbjct: 359 MDRLEPGPDTLRWARGLLDSLPQIHGARRELLLERAKEAGRIASGPNFRPWWAALIAETY 418

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT- 676
              +      + +L  + +    +  L L    EG +     ++ F+    +  L     
Sbjct: 419 EPARPP--GGVALLTPILASGTRYKRLYLTYAVEGAYRVGEREDYFIPEEDRIALETLLG 476

Query: 677 ----AEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
                 ++ G+              +I T    +     +    L +             
Sbjct: 477 QIGLPRRFQGRDRLLLAELRARAEEVIITYPEADQERQNVPEPALVQGRAPRLAAVPPG- 535

Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                        L+     P+  R  P     A     +  E++   + P+  +  R L
Sbjct: 536 -----------SALEVGEGIPYRARLSPLTLGNA-----TVEELRYYEDCPFRFWIERRL 579

Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
            +   P +                          +N       ++++ ++ FE       
Sbjct: 580 GIHDPPLWW-------------------------RNLVRELRQLQRLSEARFETLKTRFA 614

Query: 852 IDIIWRHLFHKIS 864
               W   F +  
Sbjct: 615 EAAGWLERFRERL 627



 Score = 39.9 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 47/520 (9%), Positives = 107/520 (20%), Gaps = 43/520 (8%)

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
           + + +        +            +      V    A N   EA  +  +++  L E 
Sbjct: 198 LNALARRIQVWVALPEVWGNLEASETLSARDPQVRTYRAPNPVSEARWVLRSIKRDLAEG 257

Query: 386 KKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
                L        +   L L   +G+ +        + T    +L SLL          
Sbjct: 258 MNPLDLAVVAPENRQAALLTLADEYGVPLVEQTPKTAADTPEGRLLLSLLELPDYPTPSK 317

Query: 445 AIATLVKHPLAKFGFPEKYL-------SRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
            +A     PL +                 A+  L               D        + 
Sbjct: 318 LLAIPELLPLGRAALERGLAGREPIGRLAAELGLADFWQSWMDRLEPGPDTLRWARGLLD 377

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK-- 555
           +                ++        +        +           G   ++      
Sbjct: 378 SLPQIHGARRELLLERAKEAGRIASGPNFRPWWAALIAETYEPARPPGGVALLTPILASG 437

Query: 556 ----LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                              +  + +  EE +         I      +      +  +  
Sbjct: 438 TRYKRLYLTYAVEGAYRVGEREDYFIPEEDRIALETLLGQIGLPRRFQGRDRLLLAELRA 497

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG---------------------LN 650
             +   +           +      +        +                        N
Sbjct: 498 RAEEVIITYPEADQERQNVPEPALVQGRAPRLAAVPPGSALEVGEGIPYRARLSPLTLGN 557

Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY-TRSLRENNIP 709
             V      ++      ++  L +     +      +           + T   R     
Sbjct: 558 ATVEELRYYEDCPFRFWIERRLGIHDPPLWWRNLVRELRQLQRLSEARFETLKTRFAEAA 617

Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
               R+ +RL  L           +G+        L+   +   Y    P      +   
Sbjct: 618 GWLERFRERLFSLTFGLAL---PTQGEPQARIDAALNRGGEVSLYTFSAPGTVEPKEFLR 674

Query: 770 YSFSEIK----QLINDPYAVYARRILKLDFIPHFKKDPDR 805
             +SE+      L  +P  V + RIL    +    +  + 
Sbjct: 675 GRWSELWLAGYLLERNPRQVRSVRILVWPVLGEPVEAYEA 714


>gi|289177478|gb|ADC84724.1| DNA helicase, UvrD/REP family [Bifidobacterium animalis subsp. lactis
            BB-12]
          Length = 1524

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 6/58 (10%)

Query: 892  ESIGIHLTGFADRIDLL----KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
            +   + + G  DR++            + DYKTG++          D QL      L 
Sbjct: 1315 DGQEVQINGRIDRLERRRFDNGDEHWRVVDYKTGNSFSPAEQFS--DLQLVCYQLGLA 1370



 Score = 43.8 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 66/748 (8%), Positives = 168/748 (22%), Gaps = 89/748 (11%)

Query: 25  LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84
           L   T +   R         ++V   VP +R         I   G    + P   +L  +
Sbjct: 69  LAVETTLAGLRAGLAAGDDGSTVM-LVPNRRVADLYSDRIIRELGSSERVRP-ATTLNAL 126

Query: 85  VEEKFTADLLLSYN-LNPPVSNIQRLLEL---------------------ARLILIWRNK 122
             +        S +     ++  ++   L                      RL+  +   
Sbjct: 127 AFQLLEIARSRSGDSAPRLINGAEQDALLRHVIAVHVEQHRRGEDGSCETCRLLSAYFED 186

Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNL----------------------ADIIDIIE 160
                         +   S A  +  A  +                      A  I  + 
Sbjct: 187 AGVQAPPARKGVGAAANSSSAGTLDWATIVMDAADANDADEETIADIAANVNAGFIAQLR 246

Query: 161 TEEKKWEDLHALKN---------EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
                ++++ AL            +    W +      + S+      + L     +  +
Sbjct: 247 DVFAHFDEVGALLRLGAMQPTAAARNVEEWTMQVACQAVESEGPAGVRLSLQWRLALALR 306

Query: 212 IALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPN------------ 254
                  A        +  +  P+    S     A    +  V +  +            
Sbjct: 307 REYFDLVARRYPGEYRLDPSYLPLAAMRSLTVAGAWMPTLLVVDDVQDLTLGGLALLAVL 366

Query: 255 ---GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
              G  ++   D       +     +       +        +   +          D+ 
Sbjct: 367 QGLGVHLVLFGDPDEAVQAFRGSYPEYLYARFLDPNGPFAADHVSLQAFQHEPATYRDIV 426

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK-----CFSDVALIEADN 366
                 +        +  +  P     +  +D L     N            +      +
Sbjct: 427 ASRVSLSIASAEESSLPLAQRPGKLPAVEGSDRLRPLDANDPHTKKVLEDGSLNGRLYRS 486

Query: 367 EREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAG-IPL 421
             +E  +I   +      ++       A+I  D     R    L    + +  S+   PL
Sbjct: 487 ANDELDNIVWQISALHLNDRNVTWNDMAVICHDNADVLRFGERLRGADVPVRYSSVTRPL 546

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
           +       L +L+         +   ++     A++             ++   +  N  
Sbjct: 547 ADEPFVQGLFALIELAQLRAHGLETRSMTLAAAAQYVRARVGRIAESLLIDTANMGTNTI 606

Query: 482 SYDIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQCITPLVTYKT 539
           +  +   +      R+ T           +R+S+ D  + A    D     +   V    
Sbjct: 607 NAHVRSHRKPTRPMRLNTVNAALSSLEALARISQTDILDDASATADPDRSALAESVKASA 666

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
             +      +++   +      +               ++ G  L      +    +   
Sbjct: 667 LSDLRSQWDALASTVRAAHAAQEQASGIVVDDSRLSDTDKVGDGLEFGIDALYLLLAQG- 725

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
            +    +D++  L        +        +    +             L       + A
Sbjct: 726 -DDETLLDVLEALCGDHNEDVRNFNLLWRIVGQIADDLGSLPSKAPQYALEAAWKACHVA 784

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
               +  +  S       ++        
Sbjct: 785 DAWKVQAIFDSPDGRAANDRLDTAMRLF 812


>gi|86160294|ref|YP_467079.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776805|gb|ABC83642.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1111

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 60/714 (8%), Positives = 148/714 (20%), Gaps = 86/714 (12%)

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-----------VLPGLDC 264
                    +     +++     + P  A ++  +      A            +    D 
Sbjct: 372  DRAVRAEYQALFDHVMVDEFQDTDPLQAEVVLYLCEQGAVASDWRDVRLVPGKLTIVGDP 431

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                  +            +      H    +AKL      +   V+ L    + + G++
Sbjct: 432  KQSIYRFRRADIGVYAAVRAIVERGPH---VVAKLKANFRCEPALVRWLNGTFDGVLGKA 488

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQK----CFSDVALIEADNEREEAISIAIALRM 380
               +  F P   +      +                +  +  + +    EA ++A  LR 
Sbjct: 489  AGDAPVFDPGAGTVANEPLLAGRDGGAPCAVQVLPLAAESGRKPELRATEAKALAAWLRW 548

Query: 381  SLDENKK----------------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
             ++  K+                  A++         +  EL R G+      G      
Sbjct: 549  LVEGKKRIIVDPATGAPRPAGYGDVAVLVTATVNLPLLFPELDRLGVPYAARGGTLFLAD 608

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
                     L A+   +D +A A L++ P       +   +RA +               
Sbjct: 609  PLHQQFLLGLRALADRDDGIAQAALLRPPFFAVDHDDLARARAAD--------PASTHPG 660

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
            ++  ++        ++     P   +     ++                L   +      
Sbjct: 661  VLRARAAQEVVRELRRTRLDRPPGATARDLLERTAFGRAAALGPNGAQRLEALRELCLVL 720

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                +                         L ++     L +     ++           
Sbjct: 721  EAVAA-----------------------EGLDYDAATARLRAWVDDAVQLDPPRPVGTDA 757

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
               +      G            +   G       +     +       W        + 
Sbjct: 758  VQILTVHQAKGLEFPIV------VLWDGCANLAARDVRAPFVVDRTGEAWAVALDGLEWE 811

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
                      +       +    +  A   R L+      E +   I  R +        
Sbjct: 812  EPEGGEVAGREKRYLDAERLRLVYVAATRARDLLVLPVAGEPDPERITGRLVSGEPAAPV 871

Query: 725  TDFFDNLKKRGQCYL-DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK----QLI 779
                         +  +                 +   P  +     +            
Sbjct: 872  ETLAPYAIGAEPAWAGELPAPAPRPATDGSALAAEVRTPWRSAIAEAARPRFAPGSVTGE 931

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                   A R  +       ++       G   H  I   ++      T  +        
Sbjct: 932  AHARTEAAERPGEAGPPRPERQSRHGRVFGDTVHLAIGLALRGPALAPTAAVARAAAATG 991

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893
             S    E     +  +            LE     ++   ++ +  P   A + 
Sbjct: 992  LSERRTEAAEDVVRALAA----------LERAGLRRAPGPELQLEYPVAHAADG 1035


>gi|330962479|gb|EGH62739.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            maculicola str. ES4326]
          Length = 1230

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 104/955 (10%), Positives = 223/955 (23%), Gaps = 130/955 (13%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
               +  W         DL        P   A A           D +   +   + L   
Sbjct: 271  FEKLSAWAADPTQEELDLGTGFTRLTPEGVAEAWKSDPPSHPAFDAMAGLKAALDALPKP 330

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKG 228
                       AA ++    +    R  E+     +    A +R+        L++    
Sbjct: 331  DAAVL----QHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAALRSAGGERLATLIREQFP 386

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSN 285
              +I     + P   R+  ++    +      +    D       +      +       
Sbjct: 387  VALIDEFQDTDPVQYRIFESIYRLEDNDEQNGLFLIGDPKQAIYAFRGADIYTYLRARHA 446

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP-PDTSDMRNTDI 344
            T    H   +  +    +      V        E  G  +       P P +S +     
Sbjct: 447  TQGRWHTLDTNFRSSHAMVESVNHVFMRAEQRAEGRGAFLFRDGEDNPVPFSSALAQGRK 506

Query: 345  LENKIPNIQKCFSDVALIEADNE-------REEAISIAIALRMSLDENKK---------- 387
               ++         +  +E++         ++ A S A  +   L+  ++          
Sbjct: 507  ETLELDGSPLAALTIWQLESEQPVSGVVYRQQLASSCASEIVRLLNTGQQSRAGFVAPDQ 566

Query: 388  --------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                      A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A  
Sbjct: 567  TLRGLRPADIAILVRDGKEAQAVRSQLSARGVRSVYLSDKDSVFAAQEAHDLLSWLKACA 626

Query: 439  KLN---DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            + +      A    +   L                  ++  R  ++ + I  +  ++   
Sbjct: 627  EPDSERTLRAALACITLNLPLAELERLNQDELAWERRVMQFRSYRDIWRIQGVLPMLRRL 686

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            +        +        E      + L + + Q    L   +        +L++S    
Sbjct: 687  LHDFALPQTLIS--RTDGERVLTNLLHLSELLQQAAAELDGEQALIRHLSDHLALSGQAG 744

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR---- 611
                  Q + L+   +L  +    + K L      +    S    +              
Sbjct: 745  E----EQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDAEGR 800

Query: 612  ----LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                L   E +    +       L  L   L   +     G+ +       +     S +
Sbjct: 801  AQISLQPTEELIQHADNERLAEDLRLLYVALTRSEHACWLGVADLKRGNANSSMLHRSGL 860

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
                       +         ++A G   +      +    PT  S    R         
Sbjct: 861  GYLLGGGAALPESAALKVWLRDLAEGCPAIAL----QPVPEPTADSFVAPRSEASLVKLL 916

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                +     ++     L             P  P             ++L +D      
Sbjct: 917  VPKRRAVENWWIASYSALRIGDTVTAGADESPDSPQA-----------QKLFDDERLDPE 965

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                 L       + P   + GT  H ++          +   +     ++I     +  
Sbjct: 966  APRDILVGGADIHRFPRGPNPGTFLHGLLE-----WAGNDGFALTAHNIELIRDAVARRC 1020

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-----------VNIPAKMAIESIGI 896
                    W        H  L     +      +            V +    A   + +
Sbjct: 1021 HRRG-WAGWIETLRDWLHQLLNMPMHLSPDAAPVALGDLNQPNQYRVEMEFWFASNHVNV 1079

Query: 897  H---------------------------LTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
                                          GF D     + G   + DYK+      + A
Sbjct: 1080 AQMDALVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHE-GRYYVADYKSNWLGADDDA 1138

Query: 930  -----------QKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKF 969
                           D Q  L   AL     +++      R +    Y+ L+   
Sbjct: 1139 YTELAMEASILDNRYDLQYVLYLLALHRQLKARLADYDYDRHMGGALYLFLRGSR 1193


>gi|88808889|ref|ZP_01124398.1| hypothetical protein WH7805_04336 [Synechococcus sp. WH 7805]
 gi|88786831|gb|EAR17989.1| hypothetical protein WH7805_04336 [Synechococcus sp. WH 7805]
          Length = 1229

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 67/732 (9%), Positives = 155/732 (21%), Gaps = 42/732 (5%)

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             ++      +I     + P    L+          ++L   D       +    + +T  
Sbjct: 404  ALRARYKVALIDEFQDTDPLQWTLLRQTFASRE-HLLLMVGDPKQAIYRFRG-GDLNTYK 461

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            ++              +    L      +   G   +E+   ++    S  P        
Sbjct: 462  SARAQVDRIDDLLDNRRTTPPLMEAMNRLMSPGLKHSELAVPAVSAKASCTPLSLPAGEA 521

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
               +    P           +EA      A  +   L            ++ +    A  
Sbjct: 522  PLQILAFNPEDAGGSRSRTDLEASIPCFAADLLLQILSNDTSLTPADLCILVSRHRQAEA 581

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            ++ +L+R G+   + +   + ++  +  L   L+ + +  D   +  L    L ++    
Sbjct: 582  IRDQLSRVGLPSRLISPGDVLSSRGAVELQWFLDGLARPADNERLRRLAAGALMQWPADT 641

Query: 462  KY------------------LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
                                         +  L        + DL +        Q+   
Sbjct: 642  LEVCDRNGQLDQFAAKLQALADALPRLGVMGCLAQLLEGETLADLSTRGRLLGDLQQCAR 701

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC--- 560
             V     R        A  L    L     +   +   +    +         +      
Sbjct: 702  LVQDSMHRQGLNAAGGADWLRRQRLHPPDNVPEQRQPYSDLVASAVAVVTVHRSKGLQYP 761

Query: 561  ---LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                  +          LW    G    S    +        A A           +   
Sbjct: 762  VVICPYLWEAPSPGKGPLWRLPAGDRSGSWRVALNPHWGSGHAAACADALDCMAEAERLA 821

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                      L +    E+               G      + +   S       +    
Sbjct: 822  YVAVTRAERHLVLFSAGEANPSGNPLDPWLDARAGDDDPRISLHHPRSIPPDLRWSPSRQ 881

Query: 678  EKYIG-----QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             + +      + A D      +       +   +         L+    +       +  
Sbjct: 882  PQSLQCGPVPKEALDRSWGRSSYSAWIASASSPHQSNRNNPHELEEGRDVDAGTEAPSTS 941

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
             R     +           P       FP              +   + P    +   L 
Sbjct: 942  ARDLGPDEVPDVQPSGEPLPRTGSLGTFPRGATAGDCLHRILEQIPFDQPIDQPSNHELV 1001

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
               +     D    +        +  +++  +      +            E     P  
Sbjct: 1002 ERELSRSGLDLTLKE---DVLKAVNTVLRSPLGGPLDSLRLADLHSGRRLHELSFDLPVA 1058

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG- 911
                      ++ +F     K         +     + I S G  LTG  D +       
Sbjct: 1059 HTGRAVRASALASAFRRDPHKRFGPDYAARLE---TLDIHSRGF-LTGSIDLVFTDGDDL 1114

Query: 912  ---FVDITDYKT 920
                  + D+K+
Sbjct: 1115 ATARWWVADWKS 1126


>gi|71899303|ref|ZP_00681464.1| UvrD/REP helicase [Xylella fastidiosa Ann-1]
 gi|71730929|gb|EAO32999.1| UvrD/REP helicase [Xylella fastidiosa Ann-1]
          Length = 1242

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 84/814 (10%), Positives = 193/814 (23%), Gaps = 83/814 (10%)

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            + + + +  +  +    ++IAL+R+  +          ++     +  A  R+   V   
Sbjct: 393  QTYDDLIQRVAQALDGPHRIALVRSLRQQ-----YRMALVDEFQDTDVAQWRIFHHVFGD 447

Query: 253  PNGAI-------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
               A        +    D       +      +    ++    +   + +       L  
Sbjct: 448  TEHAHTADLTPALFLIGDPKQAIYGFRGGDVHTYLAAAARAERAPPLERNFRSRPLLLRA 507

Query: 306  KREDVKRLGNVSN---------------------EMYGRSMVISKSFLPPDTSDMRNTDI 344
                  + G+ +                         G      + +  P   D      
Sbjct: 508  IEALYTQAGDAAFLTPGIAFRPVQPGTHCRDTDLSNPGVPAPALRVWQAPPPLDSTAKGK 567

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
             +    +  +     A + A ++         AL           A++      A  ++ 
Sbjct: 568  PKPWNADAARALCTDACVHAIHQWLADAQTGRALLDGRPVGAGDIAVLVRSHREATLMQQ 627

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--------- 455
             L R GI    +    L TT  ++   +LL A+    D   + T +   L          
Sbjct: 628  ALARAGIPAVAAGKRSLLTTDEANEALALLLALLHSADEGRLRTALSTVLVGLTAETIAT 687

Query: 456  ---------KFGFPEKYLSRAKN-------ALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                      +     +     +         +L AL   +        + L       +
Sbjct: 688  FDHDSVASRHWQRQALHWRERLHSGGPLGLLTDLCALHAARLLSLFDGERRLSNYLQLGE 747

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                            D     +           L      +      L  S   +  + 
Sbjct: 748  LLQQVHLRALGLHGLVDWLARRIAEAKNDDETQLLRLESDARRVQIVTLHKSKGLEYPLV 807

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
             L  V +      P  +               ++  +     A        R  +   + 
Sbjct: 808  FLPYVAIGRSHVGPGRYCVVHDAQQGRCLHWCLDKQAPEWQRAETAWKQEQRAEEARLLY 867

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
              + ++     + T          L    L +           F + V  + L   T E+
Sbjct: 868  VGLTRAKHALWIATGTFYQTERTALW-PLLGDPQAVSAQPGIVFDTAVPPAILPRLTPEQ 926

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
                  H    A   +  + +     +      +   +      G          GQ   
Sbjct: 927  P-----HSVPPARTAQRALLSDWWVYSFTQLAHA---KAEPAPDGGRRIAEPLTGGQDEP 978

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
             W         Q      +           +  +  +      +  ++     +      
Sbjct: 979  AWP----QDAIQQPLPGSEVPADPRFTGIRFGVALHEVFERTDFLAWSTWRANVAVPATE 1034

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
            +    +  RG+ +   + E ++  +   TP + H +  ++       ++P          
Sbjct: 1035 RGVLLQALRGSGY---VAEDMEAGVALLTPLVGHTLTSVLPEGVRLCDVPTTERRSEIEF 1091

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919
               I  + ++    +      +       M     G+ +TG  D I     G   + DYK
Sbjct: 1092 QFVIQATAVDALLALLHDHGLLQQRQSFGMRRRLEGL-MTGMIDLIYRHA-GRWYVLDYK 1149

Query: 920  TGDNP-------KKETAQKLIDPQLSLEAAALKA 946
            +   P                D Q  +   AL  
Sbjct: 1150 SNRLPDYTPAHLSVAMTDSEYDLQALIYTVALHR 1183


>gi|291458763|ref|ZP_06598153.1| ATP-dependent nuclease subunit A [Oribacterium sp. oral taxon 078
            str. F0262]
 gi|291418680|gb|EFE92399.1| ATP-dependent nuclease subunit A [Oribacterium sp. oral taxon 078
            str. F0262]
          Length = 1234

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 12/152 (7%)

Query: 797  PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
                +      RG  +H  ++          + ++  L+ +   +  + E+    +D   
Sbjct: 1066 EKENEKTPGARRGDAYHRALSR-YDYLAGGGSGQLRALLTEEEYALIDPESFQHFLDSEL 1124

Query: 857  RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH----LTGFADRIDLLKSGF 912
               F + +   +   E+           +P        GI     L G  D   L ++G 
Sbjct: 1125 GREFREAAEKGMLFREQRFMK------QVPFSYLFPESGITEPVLLQGVIDAFFLSENG- 1177

Query: 913  VDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
            + + DYKT     +E  ++  + QLSL A AL
Sbjct: 1178 ITLVDYKTDRTKSEEQLRRRYERQLSLYADAL 1209


>gi|148549739|ref|YP_001269841.1| exodeoxyribonuclease V subunit beta [Pseudomonas putida F1]
 gi|148513797|gb|ABQ80657.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas putida
            F1]
          Length = 1224

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 85/853 (9%), Positives = 207/853 (24%), Gaps = 100/853 (11%)

Query: 196  TERLVELNASSPVGYQIALMRAEA----EHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
              R  E+     +      + +EA      L++      +I     + P    +   +  
Sbjct: 349  KRRRAEMGFDDMLVRLQHALASEAGERLASLIREQFPVALIDEFQDTDPVQYGIFERIYQ 408

Query: 252  HPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
                     +    D       +      +       T+   H   +  +    +     
Sbjct: 409  ISENRAETGLFMIGDPKQAIYAFRGADIYTYLAARRATSGRLHSLDTNYRSSKAMVAAVN 468

Query: 309  DVKRLGNVSNEMYG--RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL----- 361
             V           G         + LP      +           +        L     
Sbjct: 469  QVFLQAEAREAGRGAFLFREADDNPLPFIEVRAKGRGEQLLIDGEVSAALQCWQLESEEP 528

Query: 362  IEADNEREEAISIAIALRMSLDENKK-------------------KSALITADRNLARRV 402
            + +   R++  +   +  ++L    +                     A++  D + A+ V
Sbjct: 529  VSSSVYRQQLAASCASHIVALLNGGQQGTAGFQNAEGELRACLPSDIAILVRDGHEAQMV 588

Query: 403  KLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM---AIATLVKHPLAKFG 458
            + EL  R   ++ +S    +     +  L + L A  + +      A    +   L+   
Sbjct: 589  RAELAAREVRSVYLSDKDSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLAA 648

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                          ++  R  ++++    +  ++   +                  +   
Sbjct: 649  LDRLNQDERVWESWVMRFRLYRDTWQRQGVLPMLRHLL---------------HDFQLPR 693

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
              +   D        L   +  + +           +     L +       ++  L  +
Sbjct: 694  TLIRRSDGERVLTNLLHLAELLQQAAGELDGEQALIRHLAEHLASSGQAGEEQILRLESD 753

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            E+   + ++          +    I     +        +     + +    L   E ++
Sbjct: 754  EQLVKVVTIHKSKGLEYPLVYLPFICTSKPVDG--SRLPLAWHDSEGNAHLTLTPDEEQI 811

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
               D   L      ++   T         +            + ++A  + +  G     
Sbjct: 812  ERADDERLAEDLRLLYVALTRAQHACWLGVADLKRGNQKSSQLHRSAFGYLLGGGLALAG 871

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
             +  L +      AS        L   D         +  L   R+  +   +  +    
Sbjct: 872  -SAQLTDWLQALAASCPHITCPGLPQADEQMYRMPHAERELLPARRPRHAAAEHWWIASY 930

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                +  Q      S+ +QL++D                   + P   + GT  H ++  
Sbjct: 931  SALRVGDQTLGADSSQAQQLLDDEVPDAQVLREVPADSGDIHRFPRGPNPGTFLHGLLEW 990

Query: 819  LIKKR-------------------INKNTPEINHLMKQIIDSHFEKENLPPHIDI----- 854
              ++                      ++       +   +     +    P  D      
Sbjct: 991  AGREGFSEVSGNPQLIERTVGQRCNRRDWAGWIPTLSHWMQRLLGEALPLPGSDQSVTLG 1050

Query: 855  IWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAKMAIESIGIH---LTGFADRIDLLK 909
              RH   ++   F  H  + +    +     +           +      GF D    L 
Sbjct: 1051 QLRHYQIEMEFWFASHRVDAEQLDRLVARHTHPGLARPAAQPTVLNGMFKGFIDLAFEL- 1109

Query: 910  SGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAAALKAGSFSQID----C 954
             G   +TDYK+               +K   +   D Q  L   AL     +++      
Sbjct: 1110 DGRYYVTDYKSNWLGADIQAYDAMAMEKAILEHRYDLQYVLYLLALHRQLRARLADYDYD 1169

Query: 955  RKVANLFYIRLKQ 967
            R V    +I L+ 
Sbjct: 1170 RHVGGALFIFLRG 1182


>gi|190890273|ref|YP_001976815.1| ATP-dependent DNA helicase [Rhizobium etli CIAT 652]
 gi|190695552|gb|ACE89637.1| ATP-dependent DNA helicase protein [Rhizobium etli CIAT 652]
          Length = 703

 Score = 52.2 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 57/543 (10%), Positives = 133/543 (24%), Gaps = 61/543 (11%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAI--------QELRSEFIEITGKKSTILPIIKS 80
           TL     +  +       + +   ++RA         +  R       G  +  L    +
Sbjct: 42  TLAHRVAHLIVKGADPRRILLMTFSRRAAAEMARRVERICRDVLGTNAGVMADALAWSGT 101

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
              +       D      L+   +   R    A LI + R+ L     +    +  +   
Sbjct: 102 FHGIGARLLR-DYAHQIGLDADFTIHDREDS-ADLINLIRHDLGFSKTESRFPAKGTCLA 159

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                             I +     E            W       L+     + E   
Sbjct: 160 ------------------IYSRAVNSETALDQVLRDAFPWCAAWEKQLRELFACYVEAKQ 201

Query: 201 ELNASSPVGYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             N        +   +   E ++          +++     +    A ++  +     G 
Sbjct: 202 SQNVLDYDDLLLYWAQMVGESVIAEDISSRFDHVLVDEYQDTNRLQASILMALKPQGQGL 261

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V+   D       +   T ++     +  +    P  ++  L               + 
Sbjct: 262 TVV--GDDAQSIYSFRAATVRNILDFPAAFS----PPANIVTLDRNYR----------ST 305

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
              +   + VI  +      +        E              L+   +E ++A  +A 
Sbjct: 306 QPILTAANAVIDLASERFTKNLWTERQSSERP-----------RLVTVRDEADQARYVAD 354

Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +  + +E    K+ A++    + +  +++ELTR  I      G+    + H   + + L
Sbjct: 355 KVLDNREEGLKLKQQAVLFRASHHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAAL 414

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                  D +A   L++          +                          +     
Sbjct: 415 RFAQNPRDRVAGFRLMQILPGVGPSTAQKALDLMAEDASPLAALAAMPAPPRSGEDWTAF 474

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               Q+  +    W + +    +  A  L        T        +    G  S   + 
Sbjct: 475 VSMLQEMKSGRAGWPAEIELARQWYAPHLERLHEDAATRQADLLQLEQIAGGYASRERFL 534

Query: 555 KLT 557
              
Sbjct: 535 TEL 537


>gi|293606508|ref|ZP_06688866.1| UvrD/REP family ATP-dependent DNA helicase [Achromobacter
           piechaudii ATCC 43553]
 gi|292815131|gb|EFF74254.1| UvrD/REP family ATP-dependent DNA helicase [Achromobacter
           piechaudii ATCC 43553]
          Length = 699

 Score = 52.2 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 68/560 (12%), Positives = 147/560 (26%), Gaps = 57/560 (10%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK--------KSTILPIIKS 80
           TL     +  LN      + +   ++RA QE+      +  +        ++  LP   +
Sbjct: 53  TLAHRVAHLILNGADPQRMLLLTFSRRAAQEMDRRVGSVLQRVMNLRGSQQAPSLPWAGT 112

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
              +       D  L   L+   +   R    A  ++        +             +
Sbjct: 113 FHAIGARLLR-DCALRIGLSEAFTIHDR--GDAEDLMGMVRHEQGLSSTKSRFPLKGTCL 169

Query: 141 SPANAIWLAKN-LADIIDIIETEEKKWED-LHALKNEKYGMWWLLAADFLKIASKYWTER 198
           +  + +  +++ +AD++        +WED L  L                     YW+E 
Sbjct: 170 AIYSRVINSQSPVADVLKTSFPWCAQWEDELKTLFRGYVAAKQDQQVLDYDDLLLYWSEM 229

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
           + +   ++ VG +                  +++     +    + ++  +   P+G  +
Sbjct: 230 MTDPGIAADVGARF---------------DHVLVDEYQDTNRLQSAILLAMK--PDGRGL 272

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               D       +   T ++     +        Q+     +  LD      + +   SN
Sbjct: 273 TVVGDDAQSIYSFRAATVRNILDFPA--------QFPKPARVITLDRNYRSTQPILTASN 324

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            + G +       L  D +  +  +                 L+   +E  +A  +A  +
Sbjct: 325 AVIGLATERFAKDLWTDRASSQLPE-----------------LVTVSDEAGQARWVADQV 367

Query: 379 RMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
               +     K  A +    + +  ++LELTR  I      G+      H   L SLL  
Sbjct: 368 LAQREGGATLKSQAALFRTSSHSAALELELTRRNIPFVKFGGLRFLEAAHVKDLLSLLRW 427

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                  MA   + +            L  A  A         +        +       
Sbjct: 428 AENPRGRMAGFRVAQLMPGIGPATAGKLMDAMAASPEPLRALREFKPGAAAQQEWGAFAD 487

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                      W + +    +  A  L                      G  +   +   
Sbjct: 488 TYAALCDPGLRWPADVDLALRWYAGQLERLYDDARVRKTDLDQLVRLAAGYPTRERFLTE 547

Query: 557 TVTCLQNVCLDEHRKLPNLW 576
                 +   DE        
Sbjct: 548 LTLDPPDATSDESGAPSRDE 567


>gi|78049998|ref|YP_366173.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
 gi|78038428|emb|CAJ26173.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
          Length = 1350

 Score = 52.2 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 69/872 (7%), Positives = 183/872 (20%), Gaps = 133/872 (15%)

Query: 161  TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
             E +    +  L   +      LA    +   + + + +  +  +       AL++    
Sbjct: 375  EEWRSRRRIALLHALRDDAIARLALLKRQRRVQTYDDLVDGVAHALQGAQADALVKRL-- 432

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI-------VLPGLDCHIPTAIWNT 273
               +      ++     +      + S V      A        +    D       +  
Sbjct: 433  ---RTQYAIALVDEFQDTDDRQWSIFSNVFGEGPLARAAGLEPALFLIGDPKQAIYGFRG 489

Query: 274  ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
               ++    +     +    ++       L        + G     +             
Sbjct: 490  GDVRTYLAAAVTAELAPPLSHNFRSRPGVLAAIDALYAQAGYADAFLTDGIAFHPVRAGT 549

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALI-------EADNEREEAISIAIALRMSLDENK 386
                +    D +      + +                A   RE A +  +A         
Sbjct: 550  KRVDEDLQRDGVTAPALTLWRAPEPPPPAKGKPKPWSAGRARELATAACVAAIRGWLAGG 609

Query: 387  KK--------------SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
            +                A++      A R++  L   GI    +    L  T  +  + +
Sbjct: 610  RDGTATVCGRPVQAGDIAVLVRSHGEATRIQQALGAVGIPAVAAGKQSLFATEQALEVLA 669

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            LL A+    D   +   +   L                      +   +           
Sbjct: 670  LLQALLDPGDDSRLRAALATVLIGEDAIAIAALERDGERHRHWQQQALDW---------- 719

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                              R   +      L+ +        L+     +      L +++
Sbjct: 720  ------------------RERWQRGGPLALIGELGATHGQRLLALVDGERRLTNYLQLAE 761

Query: 553  WT-KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
               +     L    L +         ++  +               +  +  + ++    
Sbjct: 762  LLQEADARALGPHGLVDWLSRRIANADDNDEAQQLRLESDARRVQIVTLHKSKGLEYPLV 821

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
             +    +    + +    ++   +              +         +           
Sbjct: 822  FLPYIGIGRSDKGAGRHCVVHAPDVGRQLHWKTERDDPSWSAAEAAWKQEQRAEDARLLY 881

Query: 672  LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
            + L  AE  +  A+  F     T      R+L                   G      + 
Sbjct: 882  VGLTRAEHALWIASGPFHQHERTALSAMLRALDALQG------------AAGEGTVVVDT 929

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY----- 786
                         ++         +    P       T   +       DP A       
Sbjct: 930  STPPAHLPRLPAPIEAQVPPARSAQRHIAPEWWVYSFTQLANADAGAATDPMASATVVGS 989

Query: 787  ----------ARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL-------IKKRINKNTP 829
                      A  +        F         G + H++            +        
Sbjct: 990  GGSDEPSGSEAVAVAVASDAEPFDPRFAGNRFGVVMHDVFERCDFAAWQAWRPSQPAPDG 1049

Query: 830  EINHLMKQIIDSHFEKENLPPHIDII----------------------------WRHLFH 861
            +   +++ +    + +++L   + ++                                  
Sbjct: 1050 QAAPILQALQRGGYAQDDLDDGLRMLTALIGHTLTVALPEGTRLADVPEPQRRNEMEFHF 1109

Query: 862  KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921
             +  + ++    +      +             G+ +TG  D +     G   + DYK+ 
Sbjct: 1110 AMRPTRVDALLALLHRFGVVGDRQAFGARQRLEGL-MTGLID-LTYSVDGRWYVLDYKSN 1167

Query: 922  DNPK-------KETAQKLIDPQLSLEAAALKA 946
              P        +  A    + Q  +   AL  
Sbjct: 1168 RLPSYDADALARAMAHSEYELQALIYTVALHR 1199


>gi|170782257|ref|YP_001710590.1| putative DNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156826|emb|CAQ01993.1| putative DNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 640

 Score = 52.2 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 58/576 (10%), Positives = 130/576 (22%), Gaps = 38/576 (6%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T RA  ELR    E+           ++      ++             P   
Sbjct: 99  RVMALTFTSRAAAELRGRLRELGAGPVA----ARTFHAAALKQLNFFWPQVVGGTMP--- 151

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                   RLI      L    + L      +     A  +   K     +  +E     
Sbjct: 152 --------RLIESKGRMLGHAAESLRLRLDTAALRDMAAEVEWRKV---SMISVEEYGLA 200

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
                 L  +      +      +        +L   +        I          ++ 
Sbjct: 201 ARTSRTLPPQLDADQAVALLQAYEDIKDQ-RRQLDFEDVLLATAGMIEA-EPWVAQQVRE 258

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
                ++       P    ++           V+   D       +           +S 
Sbjct: 259 QYRFFVVDEYQDVSPLQQTILDLWMGDRRDLCVV--GDASQTIYSFAGAKSAYLLDFASR 316

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
              +T  +            +  +    G         +           +S        
Sbjct: 317 FPEATVVRLERNYRSTSGITEAANRLMRGRPGALTLVSADADPDGDGTGASSARATKGRG 376

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVK 403
              +P   + F    +    ++  EA +IA A+   +      +  A++      +  ++
Sbjct: 377 SAAVPGRGEGFRAPQVSAFPSDGAEARAIAGAIAQQISSGIAPEDIAVLYRMNGQSAVLE 436

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
             L   G++  +                  L          A  ++   PL K       
Sbjct: 437 QALGDAGVSYQVRGSQRFFDRPEIKQALLALR--------GASVSISGEPLFKSVSDVLR 488

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                                +  +  L     A             R + + +     +
Sbjct: 489 GLGWSQQPPEQQGAVRDRWESLDAIMGLAERMPAGSTFRAFTDELLERQAGQHEPTVSAV 548

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                  +  L + K  +      + +S+             +DE R+L  +        
Sbjct: 549 ------TLATLHSAKGLEWEHVYLMGLSEGLVPISYAQTLEAVDEERRLLYVGITRARSG 602

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
           L   +S+     S  +  +    ++ TR+  G   +
Sbjct: 603 LRLSWSRSGPHRSGQREPSRFLAELDTRIAGGGAKR 638


>gi|238918750|ref|YP_002932264.1| exonuclease V subunit beta [Edwardsiella ictaluri 93-146]
 gi|238868318|gb|ACR68029.1| exodeoxyribonuclease V, beta subunit, putative [Edwardsiella ictaluri
            93-146]
          Length = 1199

 Score = 52.2 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 70/794 (8%), Positives = 178/794 (22%), Gaps = 87/794 (10%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM----KGTKGPIIIAGSTG 237
              A   ++   +    R  EL     +      +       +    +      +I     
Sbjct: 340  ARALGEIRDGVQLEKRRRAELGFDDLLTRLDQALGGAGGAALAAAIRQRYPVAMIDEFQD 399

Query: 238  SIPATARLMSTVANHPNGA----IVLPGLDCHIPTAIWNTIT-----------EKSTNIT 282
            + P   R+   +    +       +L   D       +               +    + 
Sbjct: 400  TDPLQYRIFQRIYTADDARSSETALLLIGDPKQAIYAFRGADIFTYLRARAAVDACYTLE 459

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            ++  +     Q   A  L               V++        ++    P     +   
Sbjct: 460  TNWRSAPGVVQAVNALFLRLEAPFLFAEIPFLPVASAAANAGRRLTIDGEPQSAMALWLY 519

Query: 343  DILENKIPNIQKCFSDV------ALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
            D+         +  +          + A       ++     +           ++   R
Sbjct: 520  DVPGCTAQEYLQTMARCCAAQIRDWLSAGQRGTARLTGGDDGKAGRALCAADMTILVRSR 579

Query: 397  NLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            + A  ++  L+   I  + +S    + +T  +  L  LL AI        + + +   L 
Sbjct: 580  HEATVMRDALSALNIPSVYLSNRDSVFSTPEARDLLWLLQAILTPAQSRTLRSALAVGLL 639

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                                +            + ++              +  +    E
Sbjct: 640  GLDAAALDALSQDERRWDAVVDEFDGYRRQWQRRGVLPMLRELIGRRRLAENLLATAGGE 699

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             +             +T ++              +     L     Q +   + +     
Sbjct: 700  RR-------------LTDVLHLGELLQEAAAQ--LDSEPALVRWLAQQIDSPQPQAESQQ 744

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
               E  + L  + +     G       + ++    R   G        ++          
Sbjct: 745  MRLESDRHLVQVITIHKSKGLEFPLVFLPFVATFRRQRQGLYHDRVTHQAVLDLCADDDA 804

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
              L + + L        V       +  L        N +  ++          +     
Sbjct: 805  LALADQERLAEDLRLLYVAVTRAVYHCALGIAPLVSGNRRKQDESDLHHGAIGYLLQRAE 864

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                  +     +           + L      +    + +      R L         +
Sbjct: 865  ------ACDAEGLKQALQTLSNDPIHLEILSPCEGTPWQAEPVP--PRALCARRFTRRLQ 916

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                     A  +    + ++ L                 I      P     GT  H++
Sbjct: 917  DDWRVTSYSALQQHGGSTYLELLPRLDIDAAGENRTAAATIFSAHTFPRGAAPGTFLHDL 976

Query: 816  ITE----------------LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI----- 854
            + +                L +       P +   + QI+ +  ++  L           
Sbjct: 977  LEKLDFAAAPDPVWLAEQCLAQGIDLAWVPTLAQWLTQILQTPLDESGLTLSHLAPSQRQ 1036

Query: 855  --------IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
                    I R L  +   + +   + + +  E +  +    M        L GF D + 
Sbjct: 1037 PELQFYLPIARPLRAEALDALIRRHDALSAQCEALAFSQVEGM--------LKGFIDLVF 1088

Query: 907  LLKSGFVDITDYKT 920
              + G   + DYK+
Sbjct: 1089 CHR-GRYYLLDYKS 1101


>gi|304403945|ref|ZP_07385607.1| recombination helicase AddA [Paenibacillus curdlanolyticus YK9]
 gi|304346923|gb|EFM12755.1| recombination helicase AddA [Paenibacillus curdlanolyticus YK9]
          Length = 1338

 Score = 52.2 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 69/671 (10%), Positives = 150/671 (22%), Gaps = 130/671 (19%)

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
           + E+      L +       +  +    +A+L     ++  +   + +  +      +  
Sbjct: 240 LFEQALALTRLPAGPAPYGDTLDEDRKVVAQLANAVASEPWEAWPEAFASASFGRLKAMR 299

Query: 144 ------NAIWLAKNLAD----IIDIIET--EEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                      AK L D    +I  +      +  E L     E+        ++ +   
Sbjct: 300 GDEFDKQLQERAKELRDKAKTLIAGLTDKWFRRTPEQLRE-DLEELAPLMEALSELVIAF 358

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG--------------PIIIAGSTG 237
              + E   E         + + +R          +                I++     
Sbjct: 359 GHRYDELKREKGLLDFSDLEHSCLRILRAAESSPEQELPSAAALEYQQRFVEILLDEYQD 418

Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST-------------NITSS 284
           +      ++S +A   N  +V    D       +                       T+ 
Sbjct: 419 TNTVQEAIVSLIAKPGNRFMV---GDVKQSIYRFRLAEPNLFLTKYKTYVPADQIGETAD 475

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKR----------------------------LGNV 316
           + + ST  Q  +   L      R +V                                  
Sbjct: 476 SPSISTASQSGVRIDLARNFRSRAEVVDGVNGIFRAVMRETVGELEYDERAELVCGAAYP 535

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKI-------PNIQKCFSDVALIEADNERE 369
           S +   R            TSD+   D  E+          + +     +   E    + 
Sbjct: 536 SPDRADRFAAELVLVDRKGTSDVSGMDAGESLADEDSSGDADGEGLTPAMEAAELQTAQL 595

Query: 370 EAISIAIALRMSLDENK---------------KKSALITADRNLARR-VKLELTRFGINI 413
           EA  IA  +R  +DE                 +   ++          +  EL  F I  
Sbjct: 596 EARVIARRIRELMDEGYPVWDGRRKETRPLQFRDIVILLRATQQWAPIMIEELQTFDIPA 655

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
               G          ++ SLL  I      + +A  ++ P+      E    R       
Sbjct: 656 YAELGTGYFDATEVEVMMSLLRIIDNPYQDIPLAGALRSPIFGLTAEELAKVRIALRSGS 715

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                                                         A  L   +   +  
Sbjct: 716 FYEAIRY------------------------------------SASAEALPSGVQAKLEQ 739

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
            ++            S+ +   L                           +         
Sbjct: 740 FLSQLDRWRELARRGSLVELLALLYRETGYYDFVGGLPGGAQRQANLRALMDRARQYEAT 799

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
           +   +         +     D  + +   E+   + I+   +S+ L F  + + GL +  
Sbjct: 800 SFRGLFRFLRFIERMRDTGGDLGSARALGEQEDVVRIMSIHKSKGLEFPVVFVAGLGKMF 859

Query: 654 WPKNTAKNPFL 664
             ++      L
Sbjct: 860 NMQDLNAPFLL 870



 Score = 45.3 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 58/429 (13%), Positives = 115/429 (26%), Gaps = 45/429 (10%)

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            S+SD      +      L+       L             +      + I A  +  ++ 
Sbjct: 929  SVSDAEAKLASWSGAADLEGRLSDDRLAAARAYLDWVGPLAVGSGMLTTISAEGVTALNE 988

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            + +++  +       +           +   +    ++                 L   +
Sbjct: 989  VEQIVSDDRAGADGARHVPTLDAVRPPASEQSAAAAVIPLQGWRFGV--------LPASL 1040

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
              D    +AE+ + +  H+ +            +      P+ AS  + RLL        
Sbjct: 1041 FVDEAAVSAEEAVSEQEHELKDKLAA------IAELAVMEPSDASDEVNRLLSWTYGHTA 1094

Query: 729  DNLKKRGQCYLDWTR--KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
              +        +  R          P  + P   P L       + +       D Y   
Sbjct: 1095 STIVPAKTSVTEMKRLHAEREALIYPDAENPAIAPMLGDNRFNGAPASAVSSAED-YTFR 1153

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
             RR          ++     +RGT+ H  +  +              L++Q +D    + 
Sbjct: 1154 LRR-----PRFMEERALTAAERGTVSHLFMQHIPLNGPID-----AALLQQTLDGLIARH 1203

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-------------S 893
             +              IS  F     +   S   +   +P   A+               
Sbjct: 1204 IM--TAKQASVIDLPAISSFFESAIGRRLLSARWMKRELPFSCALPASRIYEQQADLTDD 1261

Query: 894  IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALKAGSFSQ 951
              I + G  D +   + G + + DYKT        E A +    QL + A AL+      
Sbjct: 1262 EPILIQGVVDCLFEDEEG-IVLLDYKTDQVYGGQWEEAAERHRFQLDVYAEALELSIGRP 1320

Query: 952  IDCRKVANL 960
            I+   V  L
Sbjct: 1321 IEECHVHFL 1329


>gi|226228582|ref|YP_002762688.1| exodeoxyribonuclease V beta subunit [Gemmatimonas aurantiaca T-27]
 gi|226091773|dbj|BAH40218.1| exodeoxyribonuclease V beta subunit [Gemmatimonas aurantiaca T-27]
          Length = 1210

 Score = 52.2 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 72/853 (8%), Positives = 195/853 (22%), Gaps = 78/853 (9%)

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSI 239
               +    +        +     +G   A++ A          ++      +I     + 
Sbjct: 336  LQDVDDRVRTLKRERSLMGFDDLLGQLHAVLAAQGSEGLLARAIRQQFQAALIDEFQDTD 395

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
                 +         G  +    D       +     ++    +   ++    +++    
Sbjct: 396  SHQFHVFRI---AFAGQPLFLIGDPKQAIYAFRGADVRAYLEAARQASHRYSLEFNFRST 452

Query: 300  LDFLDIKREDVKRLGNVSNEM-----YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
               +        R      E         +     +      S   +   +     N   
Sbjct: 453  PPMVQAVNALFSRSTAPFVEPEIAFHPATARNFDPNPKGVAGSHGLHWLFVPPDTRNGNS 512

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
              + +        R  A  IA  ++   +    + A++         +   L   G+   
Sbjct: 513  VPTPIGQARTLLFRACASRIASYIKQ--EVPPGRIAVLVRKGFEGVEMVQVLAEAGVRSV 570

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR-----AKN 469
            +S    +  +L  + L  +L AI    D   +   +   L      +           + 
Sbjct: 571  VSGLGDVMQSLEMAELQRVLEAIAVPRDPSRVRAALATTLWGATHEDLVRLASPEGEREW 630

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQK---------NNTHVPHWQSRLSEEDKELA 520
               L  +   +  +       L+     ++          +            E     A
Sbjct: 631  EEILTEVASLRELWATQGTLQLLERLFESRAVVSRYLTYTDGDRRLTNLRHAQELLHGAA 690

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSIS-----DWTKLTVTCLQNVCLDEHRKLPNL 575
                  I   +  L   +     T G   +      D  ++           +    P L
Sbjct: 691  EQDALSIEGTLRWLDAARREPAETRGVRELRLESDDDAVQIVTVHRSKGLEYDLVFCPTL 750

Query: 576  WFEEEGK----TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
            W     +     L     +++      +           RL +   +       +     
Sbjct: 751  WGVRRVEPDAPVLVHEQGRVVYDHGSPRLAERTAQAERERLAEDCRLVYVALTRARFRTY 810

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-NLKTAEKYIGQAAHDFEM 690
                      +      L+  ++    A +      +   L     A + + ++  D   
Sbjct: 811  VAWGPIGNAPNGSEQSALSWLLFDGAAAPDRDGPAAVADQLRAAPDAWQGMLRSLVDAHP 870

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            +     ++ T            +  L             +L++R   +   +        
Sbjct: 871  SLMALDMVDTWQPIAPVAAAPQAPPLTGHARQL--PSVPSLRERFSTFSIASFTSLTAGV 928

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF------IPHFKKDPD 804
                +          +      + +  + NDP+         +          H   D  
Sbjct: 929  YESLRAEMSEQVARDRDAQPDATPVTTVTNDPHDFRTFPAGAVPGTVLHAIFEHAHFDGS 988

Query: 805  RTDRGTLFHNIITE--LIKKRINKNTPEINHLMKQIIDS-----HFEKENLPPHIDIIWR 857
                  +    +      +      T     +M++++ +      F    +P        
Sbjct: 989  PAAWQEIADRELLVLGFDEDEHELRTASTVRMMQRLLQAPLPGLGFALAAVPASRTRREW 1048

Query: 858  HLFHKIS--------HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909
                 ++         +      +   +    + +   +++   +  +LTGF D +   +
Sbjct: 1049 QFLLPLASADHVMTRQALAAVFAQHGGAHGAAYADQLRRLSFNRLHGYLTGFVDLLFEHE 1108

Query: 910  SGFVDITDYKT-------GDNPKKE----TAQKLIDPQLSLEAAALKAGSFSQID----C 954
             G   + D+K+       G                  Q  L   A       ++      
Sbjct: 1109 -GRWYVVDWKSNQLGADNGAYKSSALQTVMDDHHYTLQYHLYLVAAHRFLAQRVPDYDYD 1167

Query: 955  RKVANLFYIRLKQ 967
              +    Y  L+ 
Sbjct: 1168 THIGGAAYAFLRG 1180


>gi|86356226|ref|YP_468118.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
 gi|86280328|gb|ABC89391.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
          Length = 686

 Score = 52.2 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 57/543 (10%), Positives = 133/543 (24%), Gaps = 61/543 (11%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAI--------QELRSEFIEITGKKSTILPIIKS 80
           TL     +  +       + +   ++RA         +  R      TG  +  L    +
Sbjct: 42  TLAHRVAHLIVKGADPRRILLMTFSRRAAAEMARRVERICRDVLGSKTGVMADALTWSGT 101

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
              +       +      L+   +   R    A LI + R+ L     +    +  +   
Sbjct: 102 FHGIGARLLR-EYAQQIGLDADFTIHDREDS-ADLINLIRHDLGFSKTESRFPAKGTCLA 159

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
                             I +     E            W       L+     + E   
Sbjct: 160 ------------------IYSRAVNSETALDQVLRDAFPWCAAWEKQLRELFACYVEAKQ 201

Query: 201 ELNASSPVGYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             N        +   +   E ++          +++     +    A ++  +     G 
Sbjct: 202 AQNVLDYDDLLLYWAQMVGESVIAEDIGSRFDHVLVDEYQDTNRLQASILMALKPQGQGL 261

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V+   D       +   T ++     +  +    P   +  L               + 
Sbjct: 262 TVV--GDDAQSIYSFRAATVRNILDFPAAFS----PPADIVTLDRNYR----------ST 305

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
              +   + VI  +      +        E              L+   +E ++A  +A 
Sbjct: 306 QPILTAANAVIDLASERFTKNLWTERQSSERP-----------RLVTVRDETDQARYVAE 354

Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +    +E    K+ A++    + +  +++ELTR  I      G+    + H   + + L
Sbjct: 355 KVLDHREEGLKLKQQAVLFRASHHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAAL 414

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                  D +A   L++          +      +                   +     
Sbjct: 415 RFAQNPRDRVAGFRLMQILPGVGPSTAQKALDLMSEDASPLSALAAMPAPPRSGEDWTAF 474

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               Q+  +    W + +    +  A  L        T        +    G  S   + 
Sbjct: 475 VSMLQEMKSGKAGWPAEIELARQWYAPHLERLHEDAATRQADLLQLEQIAGGYASRERFL 534

Query: 555 KLT 557
              
Sbjct: 535 TEL 537


>gi|327482104|gb|AEA85414.1| exodeoxyribonuclease V beta chain [Pseudomonas stutzeri DSM 4166]
          Length = 1227

 Score = 52.2 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 77/818 (9%), Positives = 186/818 (22%), Gaps = 74/818 (9%)

Query: 167  EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA------- 219
            +     +  K  +   L    L+     + E  +             L RA         
Sbjct: 324  DAWVDHEESKQDIRAQLLLHALREVQGAFEEEKLRRAQIGFDDLLNRLGRALEGPSGPRL 383

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARL---MSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
               ++      +I     + P    +   +  +  +     +    D       +     
Sbjct: 384  AQTIRQQYPVALIDEFQDTDPVQYGIFGKIYCIGENLPDCGLFMIGDPKQAIYSFRGADI 443

Query: 277  KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS-KSFLPPD 335
             +       T    +   +  +    +        +          R      ++ +P +
Sbjct: 444  YTYLKAREATKGRHYTLGTNYRSTQAMVDAANHCFKFAEAHPRAAFRFAEEGKENPVPFE 503

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIE------ADNEREEAISIAIALRMSLDENKK-- 387
              D +            QK  +   L        A   RE +   A A++  LD + +  
Sbjct: 504  GVDAKGRSDTLEIEGEKQKALTLWQLQTNGVINNATYLREASEVCASAIQAWLDRSAEKP 563

Query: 388  ----------------KSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSIL 430
                              A++   R  A  ++  L R  +  + +S    +  +  ++ L
Sbjct: 564  SGLRNSDGQLTALKPADIAILVRSRKEAEAIRKALARRKLASVYLSDRDSVFESEEATDL 623

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS---RAKNALELVALRGNKNSYDIMD 487
              +L A  +      +   +        + +              +   R  +  +    
Sbjct: 624  LCILRACAQPTSDRLLRAALATRSVGISWQDLEQLNQNELCWEAHVQWFRDFRVLWQQQG 683

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
            +  ++   +AT K    +        E      + L + + +    L             
Sbjct: 684  VLPMLRRLLATFKVPARLL--AEEQGERRLTNLLHLAEWLQRSAAELDGEHALIRHLAEQ 741

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +      ++    L++          +     E   +   F+               + +
Sbjct: 742  IKEQSEEEILR--LESDSDLIKVVTVHKSKGLEYPLVMLPFACSARAVDGRSKAPPMFHE 799

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG--GLNEGVWPKNTAKNPFL- 664
                         K + +         E        L +         W     +     
Sbjct: 800  RQDEHYSLVLELAKGDPAKPAQKRADDERMGEEMRLLYVALTRARYATWICVAPQGFKTG 859

Query: 665  -SRVMQSDLNLKTAEKYIGQAAHDFEM------ANGTRHLIYT-RSLRENNIPTIASRW- 715
             S +      L       G  A D+        A G   +       +   +    +R  
Sbjct: 860  GSSIDLHKSGLGYLLAGEGTVAPDWLAEVVDAFAKGCDDIAVCKAPAQTEGVHVAPARPT 919

Query: 716  ---LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
                 R L    T+++           D  R    +   P           E        
Sbjct: 920  VSEALRPLHALATNWWIASYSALAIADDRARMGAESPVAPEPATALEANLQEQDDEQNPP 979

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL-----IKKRINKN 827
            + +        A     +  L      +   +        H+ +         ++ I+  
Sbjct: 980  AGVGIHAFPRGAGPGTFLHGLFEWAGDEGFGNAASDEQALHDAVARRCNLRGWERWIDPL 1039

Query: 828  TPEINHLMKQIIDS-----HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
            +  ++H +K  +            +        W    +           +         
Sbjct: 1040 SAWLSHYLKAPLRFNGTQCTLAGLSTYQVEMEFWFSSRNVNVERLDALVREHTLGGTPRL 1099

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920
            +  P       +     GF D     + G   + DYK+
Sbjct: 1100 ILAP-----NQLNGMFKGFIDLTFEHE-GRYYVADYKS 1131


>gi|288916201|ref|ZP_06410581.1| protein of unknown function DUF559 [Frankia sp. EUN1f]
 gi|288352392|gb|EFC86589.1| protein of unknown function DUF559 [Frankia sp. EUN1f]
          Length = 1525

 Score = 52.2 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 66/586 (11%), Positives = 148/586 (25%), Gaps = 40/586 (6%)

Query: 81   LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP-LSLP 139
            + + +        L+   ++P  +   RL EL  L  + R   P   +    + P     
Sbjct: 547  VSEWLASTAVELGLIPDRIDPATAPPLRLDELEELFALARRIPPAQAEAAGLDLPDPVAL 606

Query: 140  ISPANAIWLAKNLADIIDII---ETEEKKWEDLHALKN---EKYGMWWLLAADFLKIASK 193
               A    L   L ++ + +   E      + +  L      +     L  A+ L+   +
Sbjct: 607  PGAAPLSALFDRLDELDEEVSEGERLGLAPDAVDRLGAAGLAELRTELLAGAEVLRPLEE 666

Query: 194  YWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
             W +RL E  A SP   +   ++A                       A A L        
Sbjct: 667  PWLDRLREQCAYSPRLAEFWQVQA------------------GELAAAVAELHDLRGQLF 708

Query: 254  NGAIVLPGLDC-HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
               + +P  D       +       +               Y+   L+D           
Sbjct: 709  GHRVGVPDTDPRTQLEQLDELRGRFAAGKGLPRFGGRGLRDYAEQLLVD--GYPPRTADD 766

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDM-------RNTDILENKIPNIQKCFSDVALIEAD 365
            L  V   + GR  V +      D ++          T       P+        +     
Sbjct: 767  LDIVRAAITGRIRVGTALGRYADVAEQLGAPGIPGFTGPTGPTGPSGPTDDRGGSAAAVF 826

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
                   +++  L  ++     +   +        R           +  +  + L+   
Sbjct: 827  APVPALDAVSGQLAAAVGWEAGQGRELAHRLVAVFREAPTRPTAADLVHHAGLLDLAEKR 886

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-GNKNSYD 484
             +  +     A    +     +T    PL                 + +      +++  
Sbjct: 887  IAQQVARAELAGLTEHLRAGASTPAASPLWAELGDALDHRDTLRWAQALDSATRLRSARP 946

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP--LVTYKTNKN 542
             ++ ++ +  R+A                +       LL +          L       +
Sbjct: 947  EVERRAELAGRLAAVAPRWAARVLAEHGDQATCGDPGLLTELWRWRQAETWLADLHAGAD 1006

Query: 543  STCGNLSISDWTKLTVTC-LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                   +   T+ +    L+         L      E+ + L+     +   G      
Sbjct: 1007 IPALQRRLGAATEESQRLVLEVAGRSARLALARNLGSEQRQALTGWVQALSRVGKGTGRF 1066

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN-FDTLIL 646
            A  W       +        +       ++ + + R+   FD +I+
Sbjct: 1067 AGRWRAEARAHMTAAMGAVPVWIMPIHRVMESFDPRVNEPFDVVIV 1112


>gi|237801822|ref|ZP_04590283.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. oryzae
            str. 1_6]
 gi|331024681|gb|EGI04737.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. oryzae
            str. 1_6]
          Length = 1230

 Score = 52.2 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 103/957 (10%), Positives = 221/957 (23%), Gaps = 134/957 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A             +   +   + L   
Sbjct: 271  FEKLSAWAADESQEALDLGTGFTRLTPEGIAEAWKSDPPSHPAFQAMAELKPALDGLPTP 330

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++   W+ +A F +        R  E+     +    A +R         L++  
Sbjct: 331  DAAVLQHAAQWV-SARFEEE-----KRRRAEMGFDDMLLRLDAALRGAGGERLATLIREQ 384

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHP---NGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  ++           +    D       +      +     
Sbjct: 385  FPVALIDEFQDTDPVQYRIFESIYRLEDNDQQTGLFLIGDPKQAIYAFRGADIYTYLRAR 444

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T    H   +  +    +      V        E  G  +           SD     
Sbjct: 445  QATNGRWHTLDTNYRSSHAMVESVNHVFTRAEQRVEGRGAFLFRDDKGNQVPFSDALAQG 504

Query: 344  ILENKIPNIQKCFS--------DVALIEADNEREEAISIAIALRMSLDENKK-------- 387
              E    +     +        + A+      ++ A S A  +   L+  ++        
Sbjct: 505  RKETLQVDGSPLTALTVWHLESEQAVSGVAYRQQLAASCASEIVRLLNAGQQGSAGFASA 564

Query: 388  ----------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                        A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A
Sbjct: 565  DKTLRGLRPADIAILVRDGKEAQAVRQQLTARGVRSVYLSDKDSVFAAQEAHDLLSWLKA 624

Query: 437  IFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              +        A    +   L+               L ++  RG +  +    +  ++ 
Sbjct: 625  CAEPDSERTLRAALACITLDLSLAELERLNQDELAWELRVMQFRGYRAVWRSQGVLPMLR 684

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +        +        E      + L + + Q    L   +        +L++S  
Sbjct: 685  RLLHDFALPQTLM--ARTDGERVLTNLLHLSELLQQAAAELDGEQALIRHLGDHLALSGQ 742

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-- 611
                    Q + L+   +L  +    + K L      +    S    +            
Sbjct: 743  AGE----EQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDAE 798

Query: 612  ------LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                  L   E +  + +       L  L   L   +     G+ +             S
Sbjct: 799  GRPQISLQPTEALIRQADDERLAEDLRLLYVALTRSEYACWLGVADLKRGNANNSMLHRS 858

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             +           +         ++A G   ++        +    A R    L+ L   
Sbjct: 859  ALGYLLGGGTPLPESSDLKVWLRDLAEGCGAIVLQTVPESTDNSFSAPRNDASLVKLL-- 916

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                  +     ++     L             P  P             ++L +D    
Sbjct: 917  --VPKRRAAENWWIASYSALRIGDTVTAGADQSPDSPQA-----------QKLFDDERLD 963

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                   L       + P   + GT  H ++     +         + L   +      +
Sbjct: 964  PEAPRDILLGGGDIHRFPRGPNPGTFLHGLLEWAGNEGFANTAHAPDKLEDAVARRCNRR 1023

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-----------VNIPAKMAIESI 894
                      W           L    ++      +            V +    A  ++
Sbjct: 1024 G------WKGWIETLRDWLQQTLTMPLRLSPDASPVALGDLDQPNQYRVEMEFWFASTNV 1077

Query: 895  GIH---------------------------LTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
             +                              GF D     + G   + DYK+      +
Sbjct: 1078 NVAQMDALVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHE-GRYYVADYKSNWLGSDD 1136

Query: 928  TA-----------QKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKF 969
             A               D Q  L   AL     +++      + +    Y+ L+   
Sbjct: 1137 DAYTELAMEASILDNRYDLQYVLYLLALHRQLKARMADYDYDQHMGGALYLFLRGSR 1193


>gi|296158754|ref|ZP_06841583.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. Ch1-1]
 gi|295890959|gb|EFG70748.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. Ch1-1]
          Length = 1230

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 74/800 (9%), Positives = 169/800 (21%), Gaps = 65/800 (8%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAG 234
            W  L   +L  A      R       S       L RA A H      ++      +I  
Sbjct: 339  WLSLVQAWLDYAPAELVARKRTRRVVSFDDLLSNLYRALAAHPWLADALRARYPAALIDE 398

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
               + P    + S +        +    D       +      +        +       
Sbjct: 399  FQDTDPLQFAIFSRIFAPAG--PLFLVGDPKQAIYSFRAADLHTYLAAREAASACYTLAV 456

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            +       ++      +               +                  + +I  + +
Sbjct: 457  NQRSTAPIVEACNRLFEANPQAFVLDGLDYQPVRAGERRRPPFSDPQASAGDFRIWTLPQ 516

Query: 355  CFSDVALIEADNEREEA--ISIAIALRMSLD---------ENKKKSALITADRNLARRVK 403
              + +   EA  E  EA    I   LR + +               A++         +K
Sbjct: 517  GDAALNKREAQREASEACAAEIVRLLRGAREGMVTIGDAPLAPGNIAVLVQTHKQGSLIK 576

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              L  +G+     A   +  TL +  +  +L A+    D   +   +            +
Sbjct: 577  RVLAAWGVGSVELAQASVFATLDAEQIERVLAAVDTPGDLRRLRAALATDWLGLDAAALW 636

Query: 464  LSRAKNAL-------------ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
                                      R ++      +    V+ R   ++          
Sbjct: 637  RLEQVADAPSPADDPAHAADAMGWVERFSRYRTLWHERGFAVMWRTLMRELRVAQRLVAG 696

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN------- 563
               E        L + +                     +     +  +    +       
Sbjct: 697  PDGERRLTNVNHLAELVQARAATQPGIAPTLRWLAAQRTQGGGEEAQLRLESDRNLVQIV 756

Query: 564  -------------------VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                                          L    E    +               +A  
Sbjct: 757  TVHKSKGLEYAVVFCPFLNDGALREPPSSGLPDAREYHDETGTAVLHYGCDDEEAEHASR 816

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            +            V   + ++     L     +           +   +   +       
Sbjct: 817  YAVREQAAERARLVYVALTRAVYRCYLVAGTYQSSRSTRESRRSVLNWLVGGSGHSFDDW 876

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
                  +  L    + +   +   +        +   SL++ +    A    + L     
Sbjct: 877  LAEPPDEAALSARWQALAGGSITLQPLPRPERRVPLESLQDRSAHMQARANRRPLRDQWR 936

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
               F  L   G    +    ++                    P   + +E   L     A
Sbjct: 937  MASFSGLIAAGSKADEAHAPVEEVRPDHDEIADALVVTPVPAPHPQAHAEDDVLAFPRGA 996

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                 + ++  +  F   P  TD        + E       +    +  +M  ++     
Sbjct: 997  AAGDCLHRMFELADFTAPPTWTD---AIRGALRERPAPAAPELAARLPAMMHNLLRDVVA 1053

Query: 845  KENLPPHIDIIWRHLFH-KISHSFLEHEEKIQSSIEKIFVNIPA-KMAIESIGIH--LTG 900
             E  P                            ++ ++ +      +A+E   +   + G
Sbjct: 1054 TELQPGMRLANLDPRRRLNELEFLFAAPSLDFPALRELLIEHGYPDVALEPGVLRGFVKG 1113

Query: 901  FADRIDLLKSGFVDITDYKT 920
            F D I     G   I D+K+
Sbjct: 1114 FIDMIVEH-DGRFWIVDWKS 1132


>gi|239787415|emb|CAX83890.1| Exodeoxyribonuclease V, beta subunit [uncultured bacterium]
          Length = 1228

 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 86/827 (10%), Positives = 192/827 (23%), Gaps = 65/827 (7%)

Query: 114  RLILIWRNKLPDIIKDL-YPESPLSLPISPANAIWL----AKNLADIIDIIETEEKKWED 168
             L+  W                    P   A A  +    A  +   ++ +  E+ +W  
Sbjct: 275  DLLAAWCADARQPFPAWSDAAWWRLTPAGLAEAWKVGQPPAHPVFLAVETLHGEQVRWSM 334

Query: 169  L-HALKNEKYGMWWLL---AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
            L   L    +   W+    AA+   +A   + + L+ L+A         L          
Sbjct: 335  LCQRLLV--HAAHWVAERFAAEKAGLACMEFDDVLLRLDAGLQGPNGARLAALLRRQFPV 392

Query: 225  GTKGPIIIAGSTGSIPATARLMST----VANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                  +I     + P   R+ +     +A   +G  ++   D       +      +  
Sbjct: 393  A-----LIDEFQDTDPVQYRIFAAIYRDLAGADDGTALVLIGDPKQAIYAFRGADIHTYL 447

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN------------------EMYG 322
                             +    +      +       +                   +  
Sbjct: 448  AARRALAGRIDTLGRNFRSTAAMVQAVNRLFAAAETRSGGGAFLQRVAGEDPIPFFPVTA 507

Query: 323  RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
            +               +      E +      C S++  +    +   A   A    ++ 
Sbjct: 508  QGRNDLWVVDGVSQPALTLAWSGEPRAWMADACASEMVRLLQLGQEGRAGFRAGDGSLTP 567

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                  + L+ +    A        R    + +S    +  +  +  +   L A     D
Sbjct: 568  LRPVDLAVLVQSRAEYALLRAALARRGVRCVYLSDQESVFASPCAFEMRHWLAACAAPED 627

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             + + T +       G+ E         L    +R      +I   + L+          
Sbjct: 628  TVLLRTALATATLGVGWLEIDALGRDERLLEQRMRQFVGLREIWRRQGLLPMLRRLLHEF 687

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                   +   + ++    LL D +             +        + +  +      +
Sbjct: 688  AVPSRLLAGEIDGERSGERLLTDILHLAELLGGQAVAGEGELAVLRFLDEALRQADEGAR 747

Query: 563  NVCLDEHRKLPNLWFEEEGKT-----LSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                   R   +              L      +   GSC   +A +           E 
Sbjct: 748  EESERLSRLESDADLVRIVTVHKSKGLEYPLVFVPFAGSCRPVSARDLPMRGHDDAGVEQ 807

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            +    +++    +             + L      VW     +  F +  + + L     
Sbjct: 808  LLFAADEAQLARLDLERLREETRRLYVALTRARYAVWVGVVLERRFANSALHALLGGPEE 867

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
                G AA    +      ++ T +                     G       + R   
Sbjct: 868  LSEAGIAALLMPLNRADGTIVATPAPAPEWHRFQPHDGEGTGAAWRGGARQARRRVRDPW 927

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            ++     L             P  P EAQ R  +          P A             
Sbjct: 928  WMASYSALLAPLG--PMAPNAPESPGEAQFRELALERFV-----PPAPSDGSGASDGGEA 980

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                 P     GT+ H ++             +   + +++         L P     WR
Sbjct: 981  GLHTFPRGAKAGTVLHELLAWCGVCGFGAVAADSERVRQEVARR------LEPRGWSAWR 1034

Query: 858  HLFHKISHSFLEHEEKIQS---------SIEKIFVNIPAKMAIESIG 895
                +   +FL    ++            +E   V +   +A+  + 
Sbjct: 1035 DPLTRWLTTFLTTRFELSGSGGALFCPRDLEHYQVEMEFWLAVGHLP 1081



 Score = 45.7 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 53/565 (9%), Positives = 125/565 (22%), Gaps = 48/565 (8%)

Query: 7   NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66
            +   +  +     +    +   L          PL    + +   T+ A +ELR     
Sbjct: 19  RLIEASAGTGKTYTIALLYVRLVLGHGAGSTGRAPLTPPEILVVTFTRAATRELRERIRA 78

Query: 67  ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126
              + +       +  D          L +       +   R L+LA   +   +     
Sbjct: 79  RLAEAAACFRDAAT--DAAGWDPLLRALRAAYPPEAWTGCARRLQLAAEWMDEASVETIH 136

Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186
                     +          LA +   ++  +                    +W +   
Sbjct: 137 GWCHRMLQEHAFDSDTPFTRELAADQRALLTEV-----------------VRDYWRIHLA 179

Query: 187 FLKIASKY-----WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
            L   +       W +        S +  Q+ L+ A         +              
Sbjct: 180 PLSRVAAAELFDCWPKIDRLQAGVSRIFRQVGLLAAPEPFAALLEERY------------ 227

Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
                  V         LP L   +  A+                 +        A    
Sbjct: 228 -QARTRLVEMKRRFVGWLPALQALLDEAVARKWVNGRKLQVRYYQPWLDLLAAWCADARQ 286

Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                 +       ++      +  + +    P    +      + +   + +      L
Sbjct: 287 PFPAWSDA--AWWRLTPAGLAEAWKVGQPPAHPVFLAVETLHGEQVRWSMLCQRL----L 340

Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
           + A +   E  +   A    ++ +     L    +         L R    + +      
Sbjct: 341 VHAAHWVAERFAAEKAGLACMEFDDVLLRLDAGLQGPNGARLAALLRRQFPVALIDEFQD 400

Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAKNALELVALR 477
           +  +   I  ++   +    D      L+  P     A  G        A+ AL      
Sbjct: 401 TDPVQYRIFAAIYRDLA-GADDGTALVLIGDPKQAIYAFRGADIHTYLAARRALAGRIDT 459

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
             +N      +   V    A  +  +    +  R++ ED      +       +  +   
Sbjct: 460 LGRNFRSTAAMVQAVNRLFAAAETRSGGGAFLQRVAGEDPIPFFPVTAQGRNDLWVVDGV 519

Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQ 562
                +   +     W         
Sbjct: 520 SQPALTLAWSGEPRAWMADACASEM 544


>gi|320330698|gb|EFW86674.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            glycinea str. race 4]
          Length = 1230

 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 97/952 (10%), Positives = 228/952 (23%), Gaps = 118/952 (12%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A           + +   +   + L   
Sbjct: 271  FEKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAFEAMAQLKAALDSLPKP 330

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++   W+ A        +    R  E+     +    A + +        L++  
Sbjct: 331  DAAVLQHAAQWVSAR------FEEEKRRRAEMGFDDMLLRLDAALHSAGGERLATLIREQ 384

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  ++           +    D       +      +     
Sbjct: 385  FPVALIDEFQDTDPVQYRIFDSIYRLEGNDEQTGLFLIGDPKQAIYAFRGADIYTYLRAR 444

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T    H   +  +    +      V        +  G  +           SD     
Sbjct: 445  QATDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRPQGRGAFLFRDDQGNQVPFSDALAQG 504

Query: 344  ILENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK-------- 387
              E    +     +  V  +E++         ++ A S A  +   L+  ++        
Sbjct: 505  RKETLEVDGAPLTALTVWHLESEQPVSGVIYRQQLAASCASEIVRLLNAGQQGRAGFAML 564

Query: 388  ----------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                        A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A
Sbjct: 565  DKPLRGLRPADIAILVRDGKEAQAVRQQLSARGVRSVYLSDKDSVFVAQEAHDLLSWLKA 624

Query: 437  IFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              +        A    +   L                  ++  RG +  +    +  ++ 
Sbjct: 625  CAEPDSERTLRAALACITLDLPLAELERLNQDELAWEQRVMQFRGYRAVWRSQGVLPMLR 684

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +        +        E      + L + + Q    L   +        +L++S  
Sbjct: 685  RLLHDFALPQTLM--TRTDGERVLTNLLHLSELLQQAAAELDGEQALIRHLGDHLALSGQ 742

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-- 611
                    Q + L+   +L  +    + K L      +    S    +            
Sbjct: 743  AGE----EQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDAD 798

Query: 612  ------LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                  L   E +  + +       L  L   L   +     G+ +      +      S
Sbjct: 799  GNSQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNASNSMLHRS 858

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             +           +         ++A G   +         +    A R    L+ L   
Sbjct: 859  ALGYLLGGGVLLAESAELKVWLRDLAQGCDAIALQPVPEPTDERFSAPRNEAALVKLLVP 918

Query: 726  DFFDN---------LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
                            + G        +   + +       +   P   +  + S  +I 
Sbjct: 919  KRRAAENWWIASYSALRIGDTVTTGADESPDSPQAQKLFDDERLDPEAPRDISTSGGDIH 978

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
            +    P        L L++  +            L   +     ++        ++  ++
Sbjct: 979  RFPRGPNPGTFLHGL-LEWAGNEGFALTAHTPELLRDAVARRCSRRGWAGWIDTLSDWLQ 1037

Query: 837  QIID--------------SHFEKENLPPHIDIIWRH-------LFHKISHSFLEHEEKIQ 875
             +++                 ++ N        W             +   F        
Sbjct: 1038 HMLNMPLRLSPDATPVALDELDQPNQYRIEMEFWFASNNVNVAQMDALVRRFT------H 1091

Query: 876  SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA------ 929
            ++  +        +++        GF D     + G   + DYK+      +TA      
Sbjct: 1092 NNAPRAATE---TVSLNG---MFKGFIDLTFEHE-GRYYVADYKSNWLGTDDTAYTELAM 1144

Query: 930  -----QKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKID 972
                     D Q  L   AL     +++      + +    Y+ L+    + 
Sbjct: 1145 ETAILDNRYDLQYVLYLLALHRQLKARMADYDYDQHMGGALYLFLRGSRSVS 1196


>gi|328884883|emb|CCA58122.1| ATP-dependent DNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 242

 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 72/259 (27%), Gaps = 29/259 (11%)

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
              +           +   D T      +R +        P   S S++ +L  DP    
Sbjct: 1   EEAHPLTPEDARTIASWDRDLTALTAELRRTRATTRDVVLPAYLSASQVLRLAADPDGFA 60

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
                     P  K       RGT FH  +    ++                 +     E
Sbjct: 61  QE-----LARPMPKAPQPAARRGTRFHAWVESRFEELPLPFLGP---------EELPGGE 106

Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
           +     +I+      ++  +F       +       V +P  +++      + G  D + 
Sbjct: 107 DFAGEPEILDERDLDELKEAFARTPYAHR---TPYRVEVPVHLSLGGR--VVRGRIDAVY 161

Query: 907 LLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF-YIR 964
                G  +I D+KT      +        QL++   A        +    VA  F Y+R
Sbjct: 162 RDPDSGAYEIVDWKTSRVRTADP------LQLAIYRLAWAEQ--HGLAPEDVAAAFVYVR 213

Query: 965 LKQKFKIDCITNDKKKYSA 983
             +  +   +    +  + 
Sbjct: 214 TGEVARPTRLPGRAELEAL 232


>gi|320103549|ref|YP_004179140.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
 gi|319750831|gb|ADV62591.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
          Length = 686

 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 76/720 (10%), Positives = 177/720 (24%), Gaps = 119/720 (16%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS-------------TILPI 77
           V       + P     + +   T+RA +E+ +    + G  +              +L  
Sbjct: 56  VAWLIGQGVAPES---ILLTTFTRRAAREMVARLSSLVGPAADQVWAGTFHQIANRLLRR 112

Query: 78  IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            +    +  +   + L     L+     I  L    R     R                 
Sbjct: 113 REFAEALGYQSNFSILDAEDALDLVAQAIDELGLGTRGRSSTRR--GGSESGCGEAGGPL 170

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
            P +   A+ LA N    +  I  E                       + ++  ++ +  
Sbjct: 171 KPSTVQAALSLALNTRTGLPRIVEER--------------FPELSGRIEQVEAIARTYAA 216

Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTK-----GPIIIAGSTGSIPATARLMSTVANH 252
           +    NA       +  MR   +      +       +++     +      ++ T+A  
Sbjct: 217 KKRAANAMDYDDLLVQWMRLMEQRPDARDRMAREFTHLLVDEMQDTNTLQIEIVETLAAA 276

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
             G  +    D       +      +            HP   + +L        E    
Sbjct: 277 GAGN-LTAVGDDAQSIYRFRGANYDNLLKFP-----ERHPGCRVFRLEINYRSTPEI--- 327

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                          + S         +                +        N  EE+ 
Sbjct: 328 -----------VAFTNDSIRHNVEGFPKTLISARPASHLKPLAAA------TSNAYEESD 370

Query: 373 SIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
            I   ++ +++  ++  + A++  + + +  ++ +L   G+   + +G+      H   +
Sbjct: 371 LICQLIQEAVEAGRRLGEIAVLYRNHHDSIVLQGDLVTRGLKYTVRSGLRFFEQAHIKDV 430

Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
            + L  +    D  A                                  +    +  +  
Sbjct: 431 LAHLRVLSNPRDETAW--------------------------------RRLLLLLPGIGP 458

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
               RI      T  P      +E                +  L   +          ++
Sbjct: 459 AAASRILETILPTANPLDTLATAEAMASAPPRARGRFAAFVADLAQIRAADPGNRPAEAV 518

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
               K      + +          L   E+   L++ +  +    + +      +     
Sbjct: 519 HAVLK--SGYTEILKQKYEHPEQRLKDIEQLGVLAARYDALDRLVADLLLAGDVY----- 571

Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
               G       E + TL +    +++ L +  + +  L E           F +     
Sbjct: 572 ----GMDTLEPDEPAETLVLSTVHQAKGLEWSMVFVMRLIEES---------FPNARAVI 618

Query: 671 DLNLKTAEKYIGQAAHDFE--MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
           +      E+ I   A          T   + +R  R   + T  SR+LQ + V       
Sbjct: 619 EPGGLDEERRIFYVAITRAKDELILTYPHLLSRGGRGPVVLTKPSRFLQEIDVNLYERAI 678


>gi|121998487|ref|YP_001003274.1| UvrD/REP helicase [Halorhodospira halophila SL1]
 gi|121589892|gb|ABM62472.1| UvrD/REP helicase [Halorhodospira halophila SL1]
          Length = 695

 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 73/667 (10%), Positives = 150/667 (22%), Gaps = 82/667 (12%)

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            +R LE A  +     +          +   ++     +A     ++             
Sbjct: 102 PRRRLESADWVARKLARTALEAALENRDEAEAVEDEAVDAFLAFVDVVK--ADTREAAVI 159

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
             +   L        +L A    +        RL+      PV  Q  L         + 
Sbjct: 160 HAEAPRLLGAALPGHYLEAFRRFEALRDDQNVRLLNDLIHEPV--QALLADDALARRFRN 217

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
               +II        A  +L+  +A   + A V+   D       W              
Sbjct: 218 HFDHVIIDEYQDVNEAQQQLIRCIAG--DRAAVMVVGDPDQCVYQWRGARP----EYIVR 271

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                 P  +   L               +       R   +  +      +++R     
Sbjct: 272 RFDEDFPGAASYTLPHTFRFGHAVALLGNHTVVRNRQRDGKLCLAAPRNPATEVRRCTDS 331

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVK 403
           + ++                            L        +    A++    +LA  ++
Sbjct: 332 DPELYR------------------------RILAEHRATGGRLSDVAVLVRLYSLAAPLE 367

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
           LEL   G+ + +     L        L                A L++ PL     P + 
Sbjct: 368 LELLEAGVPLRLEGRAGLFQRREVRALL---------GYLRHAAGLLRDPLPDGAGPAEL 418

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
           L+                      L    L R   Q         +  L       A  L
Sbjct: 419 LTEMLM------------------LPVAGLRRPEAQAVAQGYADARLPLIRSLSRAAEDL 460

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                + +   V       +  G+  ++D     V+ L                 E    
Sbjct: 461 PRWKGRRLRQRVASLECLGAFHGDDPVADVLDEIVSELSLYEAIASGSPSA----EAATD 516

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            S +   +    +       E+++    LI              + +     ++ L +  
Sbjct: 517 RSMMVDALRRFAASGGWGLTEFLERCDELIARSAQWQDAPPEQAVRVTSIHRAKGLEWPV 576

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRS 702
           +I+ GL EG +P                +   TA     +    +         L     
Sbjct: 577 VIVPGLAEGTFPYG--------------VGEATAADLEAERRLFYVAVTRAQHRLYLVHP 622

Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
                   +     ++             + + +  +     L          R +    
Sbjct: 623 QDPRLERALRGGRAEQFDPHRAVASRFLAEAQPEHSIAAGAALHRGETPDKRLRTRVVGD 682

Query: 763 LEAQPRT 769
             A  + 
Sbjct: 683 YLAALQG 689


>gi|294786536|ref|ZP_06751790.1| conserved hypothetical protein [Parascardovia denticolens F0305]
 gi|315226114|ref|ZP_07867902.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
 gi|294485369|gb|EFG33003.1| conserved hypothetical protein [Parascardovia denticolens F0305]
 gi|315120246|gb|EFT83378.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
          Length = 1605

 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 62/683 (9%), Positives = 165/683 (24%), Gaps = 125/683 (18%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKN-------EKYGMWWLLAADFLKIASKYWTERL 199
             A +L  I   +     + +    +          +    W +A +  +  +    +  
Sbjct: 234 DFAASLRSIFARMNELGVRHDLKEEIGRVAGNGINLRLKEAWSVAFELRREYALAMKDLN 293

Query: 200 VELN--ASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAGSTGSIPATARLMSTV 249
                             R+ A    +G            +++     +  A A  +  +
Sbjct: 294 ASRGTFNVDSSYLYGQTQRSLARIKEEGRLSSIGRALPRLVVVDDYQETTLAGAAFLGQL 353

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
            +   G  ++           +     +  ++    +   + P      +   L      
Sbjct: 354 QDC--GVNLVLITCPDEAVQTFRGSFPEFLSVRLPQSPKESSPIPGQGFISGRLGRFGAQ 411

Query: 310 VKRLGNVS----NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
              L   +     +       ++        S       + ++   I+   +        
Sbjct: 412 EVTLPQPACDQGADSQPEDPSLASRISLSIASSQERDAGIGSRPWKIKGDATPAQARFYG 471

Query: 366 NEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISA-GIPL 421
           ++REE  ++   +              A+I  DR+        L +  + + ++  G+PL
Sbjct: 472 SDREETAALVRRILSLHLVQGESYDSMAIICHDRSKLSTYASALRQENVAVRLAQVGLPL 531

Query: 422 STTLHSS--------------------ILTSLLNAIFKLNDFMAIATLVKHPL--AKFGF 459
           S +                         L SL         +      ++ P        
Sbjct: 532 SQSPAVEGLFDFLELSQLSQGDLGQLFSLRSLDELALS--AYRTFLDYLRGPYGMVHGAE 589

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLV-----------------LDRIATQKNN 502
               + +A  ++     RG       +  +                        A ++  
Sbjct: 590 SADSVLKALASIVNQVDRGPSADSGPLPAEVEAVRSWLEEAVKESDSRKGDRLQARREQE 649

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL----------SISD 552
              P          +  A          +  L+T +    +  G L          +  D
Sbjct: 650 DGGPDPAESGQARPEPDAFAGSSQQTIFLQLLMTPEKQAQALGGFLTRLAPRKDKKTWRD 709

Query: 553 WTKLTVTCL------------------QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
             +L +                     +     + + +  L          + +  +   
Sbjct: 710 CLRLLIDIRSCQSRTRGKTATGKAAGGEGSGALQDQPVALLDRAFALTGRQAQWRDLALH 769

Query: 595 GSCIKANAI--EWIDIITRLIDG-------------------------ETVKPKIEKSST 627
                  A   EW+D + RL                            +++  K   ++ 
Sbjct: 770 SKEETVRAQANEWLDTVVRLFSEAQSTRTSIRRIDDFIRHVRSQDIAADSLARKAPVNNA 829

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD--LNLKTAEKYIGQAA 685
           + +L    +   ++D + L  + +G+WP    ++   +    +D     K  +     + 
Sbjct: 830 VTLLTPAGAAGGHWDYVFLPRVQDGIWPNLALRDQLFAADDLADVMFQGKILDPQDRYST 889

Query: 686 HDFEMANGTRHLIYTRSLRENNI 708
           H  ++    +        R    
Sbjct: 890 HMLDLLQNEKKSFLLAVTRARKE 912



 Score = 39.9 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 13/56 (23%)

Query: 898  LTGFADRID---LLKSG--------FVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942
            L G  DR++   + + G         V I DYKTG +   +      D QL     
Sbjct: 1298 LKGSIDRLETRLVAEDGPAGPLERKVVRIIDYKTGHSLVSKDTFN--DLQLICYQL 1351


>gi|1568655|gb|AAB51777.1| ORF993; upstream of trxA gene [Rhodobacter sphaeroides]
          Length = 331

 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/338 (10%), Positives = 77/338 (22%), Gaps = 48/338 (14%)

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK------------NTAKNPFLSRVMQS 670
           E +  + ++    S+ L    +IL    +                            + +
Sbjct: 2   EAAGRIRVMTVHGSKGLEAPIVILPDTADRKPRSDELFTLEGGARVWKTPAAESPPQIAA 61

Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
               + A          +      +  +   +  +          +++ +          
Sbjct: 62  ARERRRARDAAENLRLLYVAMTRAQCWLIAAAAGKLETGGAWHDLIRQGMEAAVASGVTT 121

Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
                   L   R                +P  + +      S +      P        
Sbjct: 122 GALVLDEGLCPRRAQASGAAARPVLPAGLWPAADVRRPEVCPSALGGAKRCPAT------ 175

Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
                    +  P +  R    H ++  L      +       L+  + D          
Sbjct: 176 ---------RCPPRKAWRWLAVHRLLEHLPLHPPEEWEAAARELLPDLPDVAP------- 219

Query: 851 HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910
                        + + L  E   ++ +    + +     +      L+G  DR+ +   
Sbjct: 220 ---------VLAEARAVLSAEPLAEALVPHALLEVAVTAEVAGR--RLSGTIDRLVVEPD 268

Query: 911 GFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKA 946
             V   DYKT        E   + I  Q+   A AL  
Sbjct: 269 -RVLAVDYKTNRVVPDRPEEVPEGILRQMGAYAEALAQ 305


>gi|27380604|ref|NP_772133.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110]
 gi|27353769|dbj|BAC50758.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 685

 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 56/525 (10%), Positives = 143/525 (27%), Gaps = 59/525 (11%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELR---SEFIEITGKK--STILPIIKSLGD 83
           TL     +  +       + +   ++RA  E+             +  + I+    +   
Sbjct: 43  TLAHRVAHLIVAGADPRRILLMTFSRRAAAEMAGRVERIARKVLGENNAAIMRDALTWAG 102

Query: 84  VVE---EKFTADLLLSYNLNPPVSNIQRL--LELARLILIWRNKLPDIIKDLYPESPLSL 138
                  +   +      ++P  +   R    +L  L+   R       +     + LS+
Sbjct: 103 TFHGIGARLLREYAERIGVDPAFTIHDREDSADLMNLVRHERGLSKTESRFPAKGTCLSI 162

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWED-LHALKNEKYGMWWLLAADFLKIASKYWTE 197
                NA      +  ++         W   L  L                     YW++
Sbjct: 163 YSRCVNAEM---EIEKVLGQHYPWCVGWAAELKGLFVAYVEAKQAQHVLDYDDLLLYWSQ 219

Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
            + +               A     + G    +++     +    + ++  +   P+G  
Sbjct: 220 MMSD---------------ALIAEEIGGRFDHVLVDEYQDTNRLQSSILLALK--PDGRG 262

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
           +    D       +   T ++      + +            +  LD      + +   +
Sbjct: 263 LTVVGDDAQSIYSFRAATVRNILEFPQSFSP--------RAEMITLDRNYRSTQAVLAAA 314

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
           N + G +       L  D +  +                    L+   +E ++A  I   
Sbjct: 315 NGVIGLARERFTKNLWTDRTSAQKPQ-----------------LVTVHDEADQARYIVEE 357

Query: 378 LRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
           +  + ++    K  A++    + +  +++ELTR  I      G+      H   + ++L 
Sbjct: 358 VLANREQGALLKHQAVLFRTSSHSGPLEIELTRRNIPFVKFGGLKFLDAAHVKDVLAMLR 417

Query: 436 AIFKLNDFMAIATLVK-HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                 D +A   ++   P       ++ L +   + + +A  G                
Sbjct: 418 FAENPRDRVAGFRILHLLPGIGPATAQRVLDQMAESADPLAALGQLPVPPRTGADWTDFV 477

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
           R       +  P    R+    +     + +        L+  + 
Sbjct: 478 RTTQNLRYSEWPADLERVRLWYEPHLDRIHEESETRRADLMQLEQ 522


>gi|116052318|ref|YP_792629.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587539|gb|ABJ13554.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1245

 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 72/864 (8%), Positives = 178/864 (20%), Gaps = 104/864 (12%)

Query: 196  TERLVELNASSPVGYQIALMR----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +R  E+     +      ++         L++      +I     + P   R+   +  
Sbjct: 361  KQRRAEIGFDDLLSRLDRALQGPGGERLAQLIREQFPVALIDEFQDTDPVQYRIFERIYR 420

Query: 252  HPNG--------AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
                          +    D       +      +       T    +      +    +
Sbjct: 421  IAADPGEPQARETGLFMIGDPKQAIYAFRGADIHTYLRAREATRGRHYTLGKNFRSTAAM 480

Query: 304  DIKREDVKRLGNVSNEMYGRSMV--------ISKSFLPPDTSDMRNTDILENKIPNIQKC 355
                               R                       +         +      
Sbjct: 481  VAAANRCFAFAEEHPRGAFRFAREGLENPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLD 540

Query: 356  FSDVALIEADNEREEAISIAIALRMSL------------------DENKKKSALITADRN 397
                 L  A   +E A   A A+R  L                         A++   R 
Sbjct: 541  AEAGVLGSAAYRQEMAERSASAIRRWLSLADLGRAGFADEQGGWRALRPADIAILVRGRA 600

Query: 398  LARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH---P 453
             A  ++  L  R   ++ +S    +  +  ++ L   L A         +   +      
Sbjct: 601  EAEAIRSALAARRLASVYLSDRDSVFDSQEAADLLHWLRACADPGADALLRVALATRSLH 660

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L                  ++  R  + S+    +  ++   +A  +    +  +     
Sbjct: 661  LDWATLERLNQDELFWERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLLRYADGER 720

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                 L +                     +       S+      +    + +    K  
Sbjct: 721  SLTNLLHLAEWLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHKSK 780

Query: 574  NLWFEEEGKTLSSLFSKIIETGSC-----IKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
             L +          + ++               A   I++  R         +       
Sbjct: 781  GLEYPLVLLPFICSWRELDGNSGAPVSFHEDGAAGRVIELARRKEQAARAYEQANDERLG 840

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
              +  L   L      +  G+   V   + +       +        T            
Sbjct: 841  EDMRLLYVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCLAA 900

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                    ++      E      A R++       G         R + ++     L   
Sbjct: 901  LRGECREIVV------EPAPEADAERYVAGRGRGLGQARETRRSSREKWWVASYSGLQLQ 954

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                             +P +   +   +              ++       + P     
Sbjct: 955  ASAGLDDDEALESDESQEPISAEEATFHEEGRSAEQPPVAHASEMR--DDLHRFPRGPAP 1012

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSH-FEKENLPPHIDIIWRHLFHKISHSF 867
            GT  H ++    ++  +    +     + +                 +W     +     
Sbjct: 1013 GTFLHGLLEWAGREGFDVARADAQRRRELVARRCDLRGWKDWAEPLDLW---LEQYLAEP 1069

Query: 868  LEHE--EKIQSSIEKIFVNIPA-----------------KMAIES----------IGIHL 898
            L     E   + +    V +                   +  +            +    
Sbjct: 1070 LRWPGGETSLAGLVAYQVEMEFWFATHQVQAEAIDALVRRHTLGGAARPALAPTLLNGMF 1129

Query: 899  TGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAAALKAG 947
             GF D +   + G   + DYK+            +       +   D Q  L   AL   
Sbjct: 1130 KGFVDLVFEHQ-GRFYVADYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALHRQ 1188

Query: 948  SFSQID----CRKVANLFYIRLKQ 967
              +++      R +    Y+ L+ 
Sbjct: 1189 LKARLPDYDYDRHMGGAVYLFLRG 1212


>gi|227832530|ref|YP_002834237.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453546|gb|ACP32299.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 684

 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/439 (10%), Positives = 108/439 (24%), Gaps = 64/439 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA  E+R    ++           ++       +            P   
Sbjct: 54  QRVLAVTFTSRAASEMRERLNQMGVGGV----QAQTFHAAARRQLKYFWPQVAGDLP--- 106

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    +LI    + +   ++ L  ++           I  AK+             
Sbjct: 107 --------WQLIDNKFSLVARAVRSLGLDNNKDTIRDFLGEIEWAKS----------SLI 148

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS-----SPVGYQIALMRAEA 219
             E    +            A  +    + + +     +         + +    +    
Sbjct: 149 SPEGYPGVIESTDREAPGDPAK-VAEVFRRYEDMKATPDLMYLDFDDLLMHIAGAIENVP 207

Query: 220 EHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +      ++       P   R++       +   V+   D +     +N  +  
Sbjct: 208 SVAEVFREQYRTFVVDEYQDVTPLQQRVLEAWLGERDDLTVV--GDANQTIYSFNGASPD 265

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                       T+PQ ++ KL        +               + VISK+      +
Sbjct: 266 YLLNF-----SRTYPQATVVKLQRDYRSTPQVTDLA----------NEVISKASGRAAGT 310

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITAD 395
            +    + E       K +         +E  EA  +A  +   L++     + A++   
Sbjct: 311 RLELQGMREPGPEPTFKAYE--------SEEIEAKEVAGQVLTLLNQGVKASEIAILYRI 362

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTL----HSSILTSLLNAIFKLNDFMAIATLVK 451
              + + +  L   G+   +  G              +L +        ND +A+A    
Sbjct: 363 NAQSEQFEQALADAGVVYQVRGGEGFFRRPEILEAIRVLIAATRRDDLPNDPVAVARAAF 422

Query: 452 HPLAKFGFPEKYLSRAKNA 470
             L       +     +  
Sbjct: 423 VELGLSATEPQGAQARERW 441


>gi|116751202|ref|YP_847889.1| hypothetical protein Sfum_3785 [Syntrophobacter fumaroxidans MPOB]
 gi|116700266|gb|ABK19454.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB]
          Length = 338

 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 63/191 (32%), Gaps = 23/191 (12%)

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
            ++  T ++S  +   N   A   R I +L  +            G++ H+ +     +R
Sbjct: 1   MSELMTTTYSMWRLFRNCRMACKWRYIDELVPLE----RDPNLAFGSVIHDCLECWHGER 56

Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
                      +   ID  +       H    W HL   +  ++ EH        E + +
Sbjct: 57  -------DLAKVLDHIDRTYPNRAQDDHQQADW-HLARAMMSAYAEHYPA--EEFEVVAL 106

Query: 884 NIPAKMAI-------ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI-DP 935
               +  I        S    L G  D I + + G   + ++KT         ++L  D 
Sbjct: 107 EKTFEGPIVNPATGATSRSFILAGKVDGI-VRQDGQHFLLEHKTASQIDASYLERLWTDF 165

Query: 936 QLSLEAAALKA 946
           Q+ L A  L+ 
Sbjct: 166 QIILYAWYLEQ 176


>gi|71274634|ref|ZP_00650922.1| UvrD/REP helicase [Xylella fastidiosa Dixon]
 gi|71899654|ref|ZP_00681808.1| UvrD/REP helicase [Xylella fastidiosa Ann-1]
 gi|71164366|gb|EAO14080.1| UvrD/REP helicase [Xylella fastidiosa Dixon]
 gi|71730606|gb|EAO32683.1| UvrD/REP helicase [Xylella fastidiosa Ann-1]
          Length = 1242

 Score = 51.8 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 92/884 (10%), Positives = 221/884 (25%), Gaps = 103/884 (11%)

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            + + + +  +  +    +++AL+R+  +          ++     +  A  R+   V   
Sbjct: 393  QTYDDLIQRVAQALDGPHRLALVRSLRQQ-----YRMALVDEFQDTDVAQWRIFHHVFGD 447

Query: 253  PNGAI-------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
               A        +    D       +      +    ++    +   + +       L  
Sbjct: 448  TEHAHTADLTPALFLIGDPKQAIYGFRGGDVHTYLAAAARAERAPPLERNFRSRPLLLRA 507

Query: 306  KREDVKRLGNVS------------NEMYGRSMVISKSFLPPDTSDMRNTDIL-------- 345
                  + G+ +               + R   +S + +P     +              
Sbjct: 508  IEALYTQAGDAAFLTPGIAFHPVQPGTHCRDTDLSNAGVPAPALQVWQAPPPLDSTAKGK 567

Query: 346  -ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
             +    +  +     A + A ++         AL           A++      A  ++ 
Sbjct: 568  PKPWNADAARALCTDACVHAIHQWLADAQTGRALLDGRPVGAGDIAVLVRSHREATLMQQ 627

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK-- 462
             L R GI    +    L TT  ++   +LL A+    D   + T +   L          
Sbjct: 628  ALARAGIPAVAAGKRSLLTTDEANEALALLLALLHSADEGRLRTALSTVLVGLTAETIAT 687

Query: 463  -YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                   +          +          L+ D  A             R      +L  
Sbjct: 688  FDHDSVASRHWQRQALHWRERLHSGGPLGLLTDLCALHAARLLSLFDGERRLSNYLQLGE 747

Query: 522  LLVDHILQCIT--PLVTYKTNKNSTCGNLSISDWTKL----------------------- 556
            LL    L+ +    LV +   + +   N   +   +L                       
Sbjct: 748  LLQQVHLRALGLHGLVDWLARRIAEAKNDDETQLLRLESDARRVQIVTLHKSKGLEYPLV 807

Query: 557  -TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                           +   +   ++G+ L     K        +    +      +  + 
Sbjct: 808  FLPYVAIGRSHAGPGRYCVVHDAQQGRCLHWCLDKQAPEWQRAETAWKQ-----EQRAEE 862

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       +   +     +      T +   L +           F + V  + L   
Sbjct: 863  ARLLYVGLTRAKHALWIATGTFYQTEHTPLWPLLGDPQAVPAQPGIVFDTAVPPAILPRL 922

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            T E+      H    A   +  + +     +      +   +      G          G
Sbjct: 923  TPEQP-----HSVPPARTAQRALLSDWWVYSFTQLAHA---KAEPAPDGGRRIAEPLTGG 974

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
            Q    W         Q      +           +  +  +      +  ++     +  
Sbjct: 975  QDEPAWP----QDAIQQPLPGSEVPADPRFTGIRFGVALHEVFERTDFLAWSTWRANVPV 1030

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                +    +  R + +   + E ++  +   TP + H +  ++       ++P      
Sbjct: 1031 PATERGVLLQALRSSGY---VAEDVEAGVALLTPLVGHTLTSVLPEGVRLCDVPTTERRP 1087

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
                   I  + ++    +      +       M     G+ +TG  D I     G   +
Sbjct: 1088 EIEFQFVIQATAVDALLALLHDHGLLQQRQSFGMRRRLEGL-MTGMIDLIYRHA-GRWYV 1145

Query: 916  TDYKTGDNP-------KKETAQKLIDPQLSLEAAALKAGSFSQID-----CRKVANLFYI 963
             DYK+   P                D Q  +   AL      ++       R +  + Y+
Sbjct: 1146 LDYKSNRLPDYTPVHLSVAMTDSEYDLQALIYTVALHRWLRFRLRDAYDYARDMGGIRYL 1205

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
              +         +  +  +A   ++     LIE V  + +G  P
Sbjct: 1206 FCRG-------MDATRPDAAGVYTQSFAPALIEAVDAMFSGACP 1242


>gi|225023329|ref|ZP_03712521.1| hypothetical protein EIKCOROL_00187 [Eikenella corrodens ATCC 23834]
 gi|224943974|gb|EEG25183.1| hypothetical protein EIKCOROL_00187 [Eikenella corrodens ATCC 23834]
          Length = 1241

 Score = 51.8 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 102/960 (10%), Positives = 228/960 (23%), Gaps = 143/960 (14%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL--HAL 172
            L    R    + ++      P  L     NA+         I+  +    +   +    L
Sbjct: 252  LFTELRQAAQEGLEQPVLSKPDRLLCFEENALRNRIRKNQHIEEADIAALQPLAVFGRRL 311

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK----- 227
                           L+    Y   RL E    S       L+      L          
Sbjct: 312  AEIDDAEQEAAIRLKLECL-GYLKTRLAEDKRRSSRRDYDDLLLDVHAALSNPEHPEQAE 370

Query: 228  ----------GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                         +I     + P    +  T      G  V    D       +      
Sbjct: 371  ALAQALAAKWRVALIDEFQDTDPLQYAIFHTAF-IRQGVPVFLVGDPKQAIYGFRGADIH 429

Query: 278  STNITSSNTTYST----HPQYSLAKLL----DFLDIKREDVKRLGNVSNEMYGRSMVISK 329
            +    +++T        H  Y   + L      L   R     L  ++      +   S 
Sbjct: 430  AYLAAAADTAPEQSYTLHTNYRSHRDLVNGIGHLFAARSRPFVLPQIAYPAVQAARAESL 489

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD------ 383
                P+ +          +   +         +   +    A  IA  L  +        
Sbjct: 490  LSPAPEAAVAVRWINPSAEDGKLPNKD----FLRELSANYCAREIAARLNQAFSGSLMIE 545

Query: 384  ---------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                      +  + A++         V   L R G+   +     +  T  +  L +LL
Sbjct: 546  GKDSKKNKPLHPGQIAVLVRKHEEGEMVARALKRRGVRSVLLQQQSVFDTPEAEALHALL 605

Query: 435  NAIFKLNDFMAIATLVKH---PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
                       +  ++             E   +  + A  +        ++    + + 
Sbjct: 606  LFWLAPQQTEYLRFVLGGIFYGYTAQDLAELNGNENRLAEWITLAETAAEAWQQHGIYTA 665

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            +           H+ H ++  S  +      ++          V            + + 
Sbjct: 666  LTRFARQSGLEQHLLHTRNERSFTNFRQLAEILALAAAECASPVALAQ-----WLEMRLK 720

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
               K   +       ++          E  + L  + +     G         ++   + 
Sbjct: 721  SSKKNKKSKENKNDREDKGNKEYQLRLESDEDLVKIVTMHAAKGLEYPLVFCPFVWDTSD 780

Query: 612  LIDGE-------------TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
             +  +               K ++++     +        L    + L    E +     
Sbjct: 781  KLVQDWNIISQSNGRNLLLAKAQLDEEDERQLFAEDLGERLRLLYVALTRAREQLVLYAA 840

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
              +        + L  +  E        D+    G      T +LR+  +  I S    +
Sbjct: 841  PCSN-TPENTFAYLLAEIGEDDCQAIRDDWRGLKGQ---ALTEALRQAWLKRIQSAAPGQ 896

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------------PKPFPPLEAQ 766
            L  L G     N + R +    +   +         +              + + P    
Sbjct: 897  LQWLEGEPPEANYRARNEQQGSYRALVLPERPLQFIRHTSFTGLSRQTLTAEEWLPENLL 956

Query: 767  PRTYSFSEIKQLINDPYAVYARRI---------------------LKLDFIPHFKKDPDR 805
                  +E ++L  +  + + R                       L L+           
Sbjct: 957  ADENPAAETERLPENERSEFLRSKNVSDELRANGQNVVQPNGQGNLWLNEAETALLAFPA 1016

Query: 806  TDR-GTLFHNIITE------------LIKKRINKNTPEINHLMKQIID--SHFEKENLPP 850
              + G   H+I+ +                 ++K+  E    +  +++      +  L  
Sbjct: 1017 GTQPGICLHSILEQTDFVHLAAEQAASYADILDKHGFEAEAWLPAVLEMVEAVRRVPLAE 1076

Query: 851  HIDIIWRHLFHKISH--------SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH----- 897
            ++ +       +++          F     +   +   I +   A   +  +  H     
Sbjct: 1077 NMQLADIPADSRVAEMGFVLHLHDFGLKRLRRWFARSDIGLPENAAAHLPQLDFHAVTGF 1136

Query: 898  LTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAAALKA 946
            L GF D I   K+G V + DYK+                   ++     Q  + A A   
Sbjct: 1137 LNGFIDLIAAGKNGRVCVIDYKSNHLGSRLADYGRAAMSAAVSEHHYYLQALIYAVATAR 1196


>gi|297626186|ref|YP_003687949.1| exodeoxyribonuclease V gamma subunit RecC [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921951|emb|CBL56511.1| Exodeoxyribonuclease V gamma subunit RecC [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 1114

 Score = 51.5 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 75/726 (10%), Positives = 166/726 (22%), Gaps = 67/726 (9%)

Query: 48  TIYVPTKRAIQELRSEFIEI---TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           T+ VP     + L             K      + +LG +      A L +  + +P   
Sbjct: 42  TVVVPGAAHRRALSQHLASRPTDPQHKIRAGIDMVTLGQLRRRCEQACLGVDPDDDPWRL 101

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYP-------ESPLSLPISPANAIWLAKNLADIID 157
                + +A+L     +   D   D +         +  +    P   I  A + A +I 
Sbjct: 102 PAM-TMHIAQLAQAHLDSGEDSATDWFALARHYLQGASGTETDRPGRVIAFADSFASLIS 160

Query: 158 IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE--LNASSPVGYQIALM 215
                    + L      +                      L         P   +  L 
Sbjct: 161 GYRRHR--PDLLLDWDEHRDVDALGRPLSDQDRWQANLWRELTHSLRPWIHPAAREDRLR 218

Query: 216 RAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
            A  +      +     + + G  G +P   R ++T++      I   G     P     
Sbjct: 219 EALDDPDPSARQHLPSRLGVVGLDGFVPDERRFLTTMSARIPLTIWQLGFGSDGPGES-- 276

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
                                     L       R+++        ++         S  
Sbjct: 277 -------------------------ALRARYGSVRDELWHRAQALPDVRIDRPGTGPSGR 311

Query: 333 PPDTSDMRNTD-ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KK 387
           P         D    +   + +     + +  +     +   +   L    D +     +
Sbjct: 312 PATVLAALQDDIRSGHGPGDPRAADESLQIHLSHGVDRQVEVLRELLCDLFDTHRDLQPR 371

Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS----------SILTSLLNAI 437
             A++  D      +     +     D   G  L   +             +L  L    
Sbjct: 372 DVAVVCTDIRRYAPLLEADFQPADTPDAHPGHALRARVAGPAAEQPNQVLELLVGLFGLP 431

Query: 438 FKLNDFMAIATLVKHPLAKFGFP-EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                   +  L   P     F  ++        L   A             + L   R 
Sbjct: 432 VSRATGQDLVDLCSLPPVAARFGFDEDGLAGLPELLARAEVRWGVDGSQRARRGLSGVRQ 491

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
           +T             +++E       +V                                
Sbjct: 492 STWVAGVDRLLAGLVMADEPPARLDTVVPVEHLDAGDADLIGGLAEFVSRMRMHLLEFAQ 551

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI------KANAIEWIDIIT 610
                Q               +   +   +  ++ ++  S          +A +   ++ 
Sbjct: 552 PCGMAQWRTRILDAIADLTDPDVAEQWQVNHIAQELDRLSAGAGTGSTALSAADISAMLR 611

Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
           RL+     +      S +         L +   ++LG  +E   P+    +  L      
Sbjct: 612 RLLRPSLGRADFGTGSLVMCGLGDIQALGHRVIVLLGIDDEHFPPRVAHDHDDLLARPTV 671

Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
                 A+    Q   D  ++ G + ++  R   +     +    +   L+       ++
Sbjct: 672 SSGRVDADARARQQFLDAVLSAGEQLIVIGRGADQLTGERLPLPVVLADLIGAAPVRDES 731

Query: 731 LKKRGQ 736
               G 
Sbjct: 732 GDDSGD 737


>gi|262183602|ref|ZP_06043023.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 683

 Score = 51.5 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/439 (10%), Positives = 108/439 (24%), Gaps = 64/439 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA  E+R    ++           ++       +            P   
Sbjct: 53  QRVLAVTFTSRAASEMRERLNQMGVGGV----QAQTFHAAARRQLKYFWPQVAGDLP--- 105

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    +LI    + +   ++ L  ++           I  AK+             
Sbjct: 106 --------WQLIDNKFSLVARAVRSLGLDNNKDTIRDFLGEIEWAKS----------SLI 147

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS-----SPVGYQIALMRAEA 219
             E    +            A  +    + + +     +         + +    +    
Sbjct: 148 SPEGYPGVIESTDREAPGDPAK-VAEVFRRYEDMKATPDLMYLDFDDLLMHIAGAIENVP 206

Query: 220 EHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +      ++       P   R++       +   V+   D +     +N  +  
Sbjct: 207 SVAEVFREQYRTFVVDEYQDVTPLQQRVLEAWLGERDDLTVV--GDANQTIYSFNGASPD 264

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                       T+PQ ++ KL        +               + VISK+      +
Sbjct: 265 YLLNF-----SRTYPQATVVKLQRDYRSTPQVTDLA----------NEVISKASGRAAGT 309

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITAD 395
            +    + E       K +         +E  EA  +A  +   L++     + A++   
Sbjct: 310 RLELQGMREPGPEPTFKAYE--------SEEIEAKEVAGQVLTLLNQGVKASEIAILYRI 361

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTL----HSSILTSLLNAIFKLNDFMAIATLVK 451
              + + +  L   G+   +  G              +L +        ND +A+A    
Sbjct: 362 NAQSEQFEQALADAGVVYQVRGGEGFFRRPEILEAIRVLIAATRRDDLPNDPVAVARAAF 421

Query: 452 HPLAKFGFPEKYLSRAKNA 470
             L       +     +  
Sbjct: 422 VELGLSATEPQGAQARERW 440


>gi|325266415|ref|ZP_08133092.1| exodeoxyribonuclease V beta subunit [Kingella denitrificans ATCC
            33394]
 gi|324981858|gb|EGC17493.1| exodeoxyribonuclease V beta subunit [Kingella denitrificans ATCC
            33394]
          Length = 1237

 Score = 51.5 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 80/819 (9%), Positives = 194/819 (23%), Gaps = 73/819 (8%)

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-------IVLP 260
               +     A     M       +I     + P    +        +             
Sbjct: 404  ALQENRTHAAALSQAMARQWRVALIDEFQDTDPLQYDIFRRAFAAESDTQKAACTPAWFM 463

Query: 261  GLDCHIPTAIWNTITEKS---TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
              D       +      +       + +    T    S A+L++ +       K      
Sbjct: 464  VGDPKQAIYSFRGADIFAYLAAAEKAEHRYTLTTNHRSHARLINSIGALFARDKPFALDH 523

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
                  S    +  LP     +R   + +          +D     A +    A  IA +
Sbjct: 524  LPYEPVSAGRKEKRLPEHEPSVRLRWLNDLHECGDTAEAADTLRHRAADWC--AREIARS 581

Query: 378  LRMSLDENKK---------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            L +S               + A++         ++  L ++GI   + +   L     ++
Sbjct: 582  LHLSAQGQFHIGSLPLEAGQIAVLVRSHKDGGLMQRTLKKYGIQSVLMSRENLFAQEEAT 641

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
             + +LL    K      +  ++   L  +   +     A +A           +      
Sbjct: 642  AVCALLEFWLKPQKTELLVYVLAGCLFGYTAADVQALLADDAQLAYWTESALQAQQDWQQ 701

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
              +        + N  +    ++ SE        +++ +             +      +
Sbjct: 702  WGVYAAMQRFLQQNGVITRLLAQGSERMLTNIGQIMELLAAEDEQGRNETALQQWLAQEI 761

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            + S  +    + L  +  DEH          +G     ++   +  G     +  EW  +
Sbjct: 762  AQSTQSGGAESRLLRLESDEHLVKIVTMHAAKGLQYPIVYCPFVWAGGKDSTD--EWQVV 819

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
                 +    K ++E      +     S  L    + L    E +     A         
Sbjct: 820  QRGGENWLLHKTQLEDGDRESMAQAQLSEDLRLLYVALTRSEEQLNVYMAAGRNTHRSDF 879

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
               L+    E      +                           + ++            
Sbjct: 880  YYLLDTPPQESDKKTVSPLAYRQC--------WQEFIARQDAQNTDFVLTDEPPPPFAAP 931

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
            +             R +    ++    R   F  L       S +   + +  P    A 
Sbjct: 932  ERTATAEHSGQPLYRAVHLPPRRYAVTRHTSFTALTRNVPRQSDTVAAEELLQPALDSAE 991

Query: 789  RILKLDFIPHFKKDPDRTDR------GTLFHNIITEL-IKKRINKNTPEINHLM------ 835
            + L         ++    +       G   H+++     ++     +     ++      
Sbjct: 992  QRLLPAASTAQAQERSMANFPAGTGVGVCLHSLLEYFRFQQAACTQSARTERVLAQYSID 1051

Query: 836  ----KQIIDSHFEKENLPP----------------HIDIIWRHLFHKISHSFLEHEEKIQ 875
                   ++   +K    P                        +      +      +  
Sbjct: 1052 ADMWLDTVNDMLDKVRQTPLIGGKALCDFLPEQRLAELDFLFPVQQFDLAALPHWLAESG 1111

Query: 876  SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-------KKET 928
               + +          +  G  L G  D +   +   + + DYK+   P        +  
Sbjct: 1112 LDGDIVQAASSLTAQ-QVSGF-LNGAIDLLLWHEPDTIVVADYKSNRLPDYAPESLTRAI 1169

Query: 929  AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
            A+     Q  + A A      S+    +   + Y+ L+ 
Sbjct: 1170 AEHHYYLQALIYAIAAARYCQSRKIAVRHIAVRYLFLRG 1208


>gi|291295633|ref|YP_003507031.1| hypothetical protein Mrub_1249 [Meiothermus ruber DSM 1279]
 gi|290470592|gb|ADD28011.1| hypothetical protein Mrub_1249 [Meiothermus ruber DSM 1279]
          Length = 742

 Score = 51.5 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 50/477 (10%), Positives = 107/477 (22%), Gaps = 60/477 (12%)

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               A      +A+   +    +  L ++  +   +      +   ++ +      L   
Sbjct: 218 ARLEAGVPPRRIAISAREEQVYLPLLLAVAREYGLSLSLFQRLSLERTLVGRAFDLLLAA 277

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
                      L+             ++                 E    PN       +
Sbjct: 278 WASGWQGAPLRLLKRHPLAPEVEAFQALPAEAPGLAYAQTLWDWVETLPTPNPRERAAKE 337

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
            +  L            A A E   ++ +                +     L       D
Sbjct: 338 AIRKLLGLYQREVREGPALAEELRSLLRQEA------VPYWPGKGVEFHSPLALFGAAVD 391

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL--------KTAEKYIGQAAHDFEMANGT 694
            L + G  EG+WP+  A +P L   ++  L                  + +    +    
Sbjct: 392 HLFVLGAAEGLWPQPVADDPVLPFHLRRRLREAHGLPLEGPVEAAQRERLSALALLLTAQ 451

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
           + L  +  LR    P   S  L+ L +                      +L         
Sbjct: 452 KTLHLSLPLRLGREPLAPSPLLEELGLEAQPPA---HLPPASPIEARWAQLSLQDPVAQK 508

Query: 755 KRPKPFPPLEAQPRTYSFS---------------EIKQLINDPYAVYARRILKLDFIPHF 799
            R   +                             +  L   P+  + R +L+    P  
Sbjct: 509 ARKALWVEFHRLYDRIPSHEGEVGAIPRGPIPLEALPDLRRCPFRFWLRGVLRPHRAPDP 568

Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
           + +             +  L+++      P+   L          +  L        R  
Sbjct: 569 RAE------------ALRRLLREVHLHPNPKEAAL------ERLPQLPLARGHREALRAR 610

Query: 860 FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
                      E  +    + + V+ P     + I   L G  D ++        + 
Sbjct: 611 LE--------SEAILPQESQLLLVDAPFTATWKGIP--LEGRLDHVERRSEALWVLV 657


>gi|296390981|ref|ZP_06880456.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PAb1]
          Length = 1245

 Score = 51.5 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 74/866 (8%), Positives = 183/866 (21%), Gaps = 108/866 (12%)

Query: 196  TERLVELNASSPVGYQIALMR----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +R  E+     +      ++         L++      +I     + P   R+   +  
Sbjct: 361  KQRRAEIGFDDLLSRLDRALQGPGGERLAQLIREQFPVALIDEFQDTDPVQYRIFERIYR 420

Query: 252  HPNG--------AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
                          +    D       +      +       T    +      +    +
Sbjct: 421  IAADPDEPQARETGLFMIGDPKQAIYAFRGADIHTYLRAREATRGRHYTLGKNFRSTAAM 480

Query: 304  DIKREDVKRLGNVSNEMYGRSMV--------ISKSFLPPDTSDMRNTDILENKIPNIQKC 355
                               R                       +         +      
Sbjct: 481  VAAANRCFAFAEEHPRGAFRFAREGLENPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLD 540

Query: 356  FSDVALIEADNEREEAISIAIALRMSL------------------DENKKKSALITADRN 397
                 L  A   +E A   A A+R  L                         A++   R 
Sbjct: 541  AEAGVLGSAAYRQEMAERSASAIRRWLSLADLGRAGFADEQGGWRALRPADIAILVRGRA 600

Query: 398  LARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH---P 453
             A  ++  L  R   ++ +S    +  +  ++ L   L A         +   +      
Sbjct: 601  EAEAIRSALAARRLASVYLSDRDSVFDSQEAADLLHWLRACADPGADALLRVALATRSLH 660

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L                  ++  R  + S+    +  ++   +A  +    +   +    
Sbjct: 661  LDWATLERLNQDELFWERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLL--RHADG 718

Query: 514  EEDKELAVLLVDHILQCITPL--VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            E      + L + + +    L          +       S+      +    + +    K
Sbjct: 719  ERSLTNLLHLAEWLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHK 778

Query: 572  LPNLWFEEEGKTLSSLFSKI-----IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
               L +          + ++               A   I++  R         +     
Sbjct: 779  SKGLEYPLVLLPFICSWRELDGNSGAPASFHEDGAAGRVIELARRKEQAARAYEQANDER 838

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
                +  L   L      +  G+   V   + +       +        T          
Sbjct: 839  LGEDMRLLYVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCL 898

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                      ++      E      A R++       G         R + ++     L 
Sbjct: 899  AALRGECREIVV------EPAPEADAERYVAGRGQGLGQARETRRSSREKWWVASYSGLQ 952

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                               +P +   +   +              ++       + P   
Sbjct: 953  LQASAGLEDDEALESDESQEPISAEEATFHEEGRSAEQPPVAHASEMR--DDLHRFPRGP 1010

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH-FEKENLPPHIDIIWRHLFHKISH 865
              GT  H ++    ++  +    +     + +                 +W     +   
Sbjct: 1011 APGTFLHGLLEWAGREGFDVARADAQRRRELVARRCDLRGWKDWAEPLDLW---LEQYLA 1067

Query: 866  SFLEHE--EKIQSSIEKIFVNIPA-----------------KMAIES----------IGI 896
              L     E   + +    V +                   +  +            +  
Sbjct: 1068 EPLRWPGGETNLAGLVAYQVEMEFWFATHQVQAEAIDALVRRHTLGGAARPALAPTLLNG 1127

Query: 897  HLTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAAALK 945
               GF D +   + G   + DYK+            +       +   D Q  L   AL 
Sbjct: 1128 MFKGFVDLVFEHQ-GRFYVADYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALH 1186

Query: 946  AGSFSQID----CRKVANLFYIRLKQ 967
                +++      R +    Y+ L+ 
Sbjct: 1187 RQLKARLPDYDYDRHMGGAVYLFLRG 1212


>gi|331019804|gb|EGH99860.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            lachrymans str. M302278PT]
          Length = 1230

 Score = 51.5 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 100/957 (10%), Positives = 220/957 (22%), Gaps = 134/957 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A             +   +   + L   
Sbjct: 271  FEKLAAWAADETQEALDLGTGFTRLTPDGVAEAWKSDPPSHPAFAAMAQLKAALDGLPKP 330

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++   W+ +A F +        R  E+     +      + +        L++  
Sbjct: 331  DAAVLQHAAQWV-SARFEEE-----KRRRAEMGFDDMLLRLDGALHSAGGERLATLIREQ 384

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  ++           +    D       +      +     
Sbjct: 385  FPVALIDEFQDTDPVQYRIFDSIYRLEGNDEQTGLFLIGDPKQAIYAFRGADIYTYLRAR 444

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T    H   +  +    +      V        E  G  +   +       SD     
Sbjct: 445  QATDGRWHTLDTNYRSSHAMVESVNHVFTRAEQRPEGKGAFLFRDEEGNQVPFSDALAQG 504

Query: 344  ILENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK-------- 387
              E    +     +  V  +E++         ++ A   A  +   L+  ++        
Sbjct: 505  RKETLEVDGAALTALTVWHLESEQPVSGVVYRQQLASRCASEIVRLLNAGQQGRAGFTAP 564

Query: 388  ----------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                        A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A
Sbjct: 565  GNAQRGLRPADIAILVRDGKEAQAVRSQLTARGVRSVYLSDKDSVFAAQEAHDLLSWLKA 624

Query: 437  IFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              +        A    +   L                  ++  RG +  +    +  ++ 
Sbjct: 625  CAEPDSERTLRAALACITLDLPLAELERLNQDELAWEQRVMQFRGYRAVWRSQGVLPMLR 684

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +        +        E      + L + + Q    L   +        +L++S  
Sbjct: 685  RLLHDFALPQTLM--TRTDGERVLTNLLHLSELLQQAAAELDGEQALIRHLGDHLALSGQ 742

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-- 611
                    Q + L+   +L  +    + K L      +    S    +            
Sbjct: 743  AGE----EQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDAD 798

Query: 612  ------LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                  L   E +  + +       L  L   L   +     G+ +       +     S
Sbjct: 799  GRAQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNANSSMLHRS 858

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             +           +         ++A G   +      +    PT  S    R       
Sbjct: 859  ALGYLLGGGTALPESADLKVWLRDLAEGCSAIAL----QPVPEPTDDSFSAPRNEASLVK 914

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                  +     ++     L             P  P             ++L +D    
Sbjct: 915  LLVPKRRAAENWWIASYSALRIGDTVTAGADESPDSPQA-----------QKLFDDERLD 963

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                   L       + P   + GT  H ++     +       +   L   +      +
Sbjct: 964  PEAPRDILVSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFANTAHDSVQLQDAVARRCNRR 1023

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-----------VNIPAKMAIESI 894
                      W +         L    ++      +            V +    A  ++
Sbjct: 1024 G------WAGWINTLRDWLQHMLNMPLRLSPDSTPVALGDLNQPNQYRVEMEFWFASTNV 1077

Query: 895  GIH---------------------------LTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
             +                              GF D     + G   + DYK+      +
Sbjct: 1078 NVAQMDTLVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHE-GRYYVADYKSNWLGSDD 1136

Query: 928  TAQKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKF 969
             A               D Q  L   AL     +++      + +    Y+ L+   
Sbjct: 1137 DAYTDLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYDYDQHMGGALYLFLRGSR 1193


>gi|330880227|gb|EGH14376.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            morsprunorum str. M302280PT]
          Length = 1230

 Score = 51.5 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 99/1021 (9%), Positives = 235/1021 (23%), Gaps = 140/1021 (13%)

Query: 70   KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL---ILIWRNKLPDI 126
              + +LP ++ L        T             S ++R   LA L      W ++L  +
Sbjct: 192  GPAALLPRVRGLFGRDRSTNTQAPAELIEA----SLLERRAALATLKAPWAAWADELYTL 247

Query: 127  IKDLYPE---------------SPLSLPISPANAIWLAKNLADIIDIIETEEKK------ 165
             +D                       L    A+    A +L      +  +         
Sbjct: 248  CQDALARKVVDGRKMQERFFKPWFEKLAAWAADETQEALDLGTGFTRLTPDGIAEAWKSD 307

Query: 166  ---------WEDLHALKNEKYGMWWLLAADFLKIASKYWTE---RLVELNASSPVGYQIA 213
                        L A  +        +     +  S  + E   R  E+     +     
Sbjct: 308  PPSHPAFAAMAQLKAALDGLPKPDAAVLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDG 367

Query: 214  LMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHI 266
             +          L++      +I     + P   R+  ++    +      +    D   
Sbjct: 368  ALHGAGGERLATLIREQFPVALIDEFQDTDPVQYRIFDSIYRLEDNDEQTGLFLIGDPKQ 427

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +      +       T    H   +  +    +      V        E  G  + 
Sbjct: 428  AIYAFRGADIYTYLRARQATDGRWHTLDTNYRSSHAMVESVNHVFTRAEQRPEGRGAFLF 487

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFS-DVALIEADNE-------REEAISIAIAL 378
              +       +D       E    +     +  V  +E++         ++ A S A  +
Sbjct: 488  RDEKGNQVPFADALAQGRKETLEVDGTALTALTVWHLESEQPVSGVVYRQQLASSCASEI 547

Query: 379  RMSLDENKK------------------KSALITADRNLARRVKLEL-TRFGINIDISAGI 419
               L+  ++                    A++  D   A+ V+ +L  R   ++ +S   
Sbjct: 548  VRLLNAGQQSRAGFTAPGKALHGLRPADIAILVRDGKEAQAVRSQLTARGVRSVYLSDKD 607

Query: 420  PLSTTLHSSILTSLLNAIFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
             +     +  L S L A  +        A    +   L                  ++  
Sbjct: 608  SVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQDELAWEQRVMQF 667

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
            RG +  +    +  ++   +        +        E      + L + + Q    L  
Sbjct: 668  RGYRAVWRSQGVLPMLRRLLHDFALPQTLM--TRTDGERVLTNLLHLSELLQQAAAELDG 725

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH---RKLPNLWFEEEGKTLSSLFSKIIE 593
             +        +L++S                         +   +     L  + S    
Sbjct: 726  EQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPV 785

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL-FILGTLESRLLNFDTLILGGLNEG 652
             GS +     +   +    +       +      L   L  L   L   +     G+ + 
Sbjct: 786  DGSRLPLQFHDADGLAQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGVADL 845

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY---------TRSL 703
                  +     S +           + +       ++A G   +           + S 
Sbjct: 846  KRGNANSSMLHRSALGYLLGGGTALPESVDLKVWLRDLAEGCNAIALQPVPEPTDDSFSA 905

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
              N    +     +R           +  + G        +   + +       +   P 
Sbjct: 906  PRNEASLVKLLVPKRRAAENWWIASYSALRIGDTVTAGADESPDSPQAQKLFDDERLDPE 965

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRIL---------KLDFIPHFKKDPDRTDR------ 808
              +    S  +I +    P        L                 + +     R      
Sbjct: 966  APRDILVSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFANTARDPIELESAVARRCNRRGW 1025

Query: 809  ---GTLFHNIITELIKKRINKNTPEINHLMKQIID--SHFEKENLPPHIDIIWRHLFHKI 863
                    + + +++   +  +       +  +     +  +         +       +
Sbjct: 1026 KGWINTLRDWLQQMVNMPLRLSPDSTPVALGDLDQPNQYRVEMEFWFASTHVNVAQMDAL 1085

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923
               F                     +++        GF D     + G   + DYK+   
Sbjct: 1086 VRRFTHDNAPR------AATE---TVSLNG---MFKGFIDLTFEHE-GRYYVADYKSNWL 1132

Query: 924  PKKETAQKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQK 968
               + A               D Q  L   AL     +++      + +    Y+ L+  
Sbjct: 1133 GSDDDAYTDLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYDYDQHMGGALYLFLRGS 1192

Query: 969  F 969
             
Sbjct: 1193 R 1193


>gi|163857713|ref|YP_001632011.1| ATP-dependent DNA helicase [Bordetella petrii DSM 12804]
 gi|163261441|emb|CAP43743.1| ATP-dependent DNA helicase [Bordetella petrii]
          Length = 707

 Score = 51.5 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 62/562 (11%), Positives = 125/562 (22%), Gaps = 61/562 (10%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQE--------LRSEFIEITGKKSTILPIIKS 80
           TL     +  LN      + +   ++RA QE        LR        +++  LP   +
Sbjct: 62  TLAHRVAHLILNGADPQRMLLLTFSRRAAQEMERRVGMVLRRVMKLHATQQAPALPWAGT 121

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
              +                         + L+    I      D    +          
Sbjct: 122 FHGIGARLLRDCAT--------------RIGLSESFTIHDR--GDAEDLMGMVRHERGLS 165

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200
           + A    L      I   +   +    D+      +   W     D LK     + +   
Sbjct: 166 ATAERFPLKGTCLAIYSRVINSQAPLADVLK----QAFPWCAQWEDALKGLFGAYVQAKQ 221

Query: 201 ELNASSPVGYQI----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           +          +     +        +      +++     +    + ++  +     G 
Sbjct: 222 DQQVLDYDDLLLYWSEMMQDEVLAREIGARFDHVLVDEYQDTNRLQSAILLAMKPDGQGL 281

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            V+   D       +   T ++            H        +  L+      + + + 
Sbjct: 282 TVV--GDDAQSIYSFRAATVRNILDFPGQFARPAH--------VITLERNYRSTQPILDA 331

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
           SN + G +       L  D +                      AL+   +E  +A  +A 
Sbjct: 332 SNAVIGLAAERYTKNLWTDRASSNRP-----------------ALVTVSDEAGQARWVAD 374

Query: 377 ALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +    +     K  A +    + +  ++LELTR  I      G+      H   + SLL
Sbjct: 375 QVLAQREAGATLKSQAALFRASHHSAALELELTRRNIPFVKFGGLRFLEAAHIKDVLSLL 434

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                    +A     +            L  A                           
Sbjct: 435 RWAENPRGRLAGFRAAQLLPGIGPAIAGRLMDALADAPEPLAALRDFKPGAAAKADWEAF 494

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                        W + L    +  A  L                      G  S   + 
Sbjct: 495 AQTYAALRAPGLQWPADLDLALRWYAPQLERLYDDARVRKADLDQLARIAAGYASRERFL 554

Query: 555 KLTVTCLQNVCLDEHRKLPNLW 576
                   +    E        
Sbjct: 555 TELTLDPPDATSAESGPPLRDE 576


>gi|84494604|ref|ZP_00993723.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
 gi|84384097|gb|EAP99977.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
          Length = 729

 Score = 51.5 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 66/684 (9%), Positives = 152/684 (22%), Gaps = 82/684 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
                   T RA  E+R+   ++           ++                        
Sbjct: 62  QRTLAVTFTARAAGEMRTRLRDLGVGGV----QARTFHAAA------------------- 98

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN--LADIIDIIETE 162
                  L +L   W   +     ++ P    ++  +            + D+   +E  
Sbjct: 99  -------LRQLHYFWPQAIGGAAPEVMPHKAGAVAEAAGRLRMRFDRTGIRDLAAEVEWA 151

Query: 163 EKKW---EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
           +      E   +           L    +      + E   E          + L+    
Sbjct: 152 KVSMLTAETYASAARAAGREAPGLDLTAMSRVLAGYEEVKAERGVIDFEDVLLVLVGILE 211

Query: 220 E-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           E       ++      ++           RL+           V+   D       +   
Sbjct: 212 ENEAVARAVREQYRSFVVDEYQDVNALQQRLLDLWLAGRQDICVV--GDPAQTIYSFTGA 269

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
           +        +      HP+    +L+       E V                        
Sbjct: 270 SPVHLLGFRAK-----HPKAQQVELVRNYRSTPEIVG------------------LANLV 306

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSALI 392
             S           +   ++      L+   ++  EA ++A  +    +        A++
Sbjct: 307 LRSPGGGRRSGSVVLEAQRESGPTPTLVSHPDDPSEAAAVAGQIADLIAGGAAPADIAVL 366

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN-AIFKLNDFMAIATLVK 451
                 +  V+  L   GI   +  G              L+  A    +  +++  LV+
Sbjct: 367 FRTNGQSENVESALADRGIPYLVRGGERFFQRKEVRDAIVLMRGAARSDDGSVSLPDLVR 426

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             L   G+     +    A E      +  +       +    R+               
Sbjct: 427 DVLLGAGWSRDAPNAGGAARERWESLASLAALADDLAAADGEARMPAFVRELDERMASQH 486

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                              +  L   K  +  T   +  SD             ++E R+
Sbjct: 487 APAVQ-----------GVTLASLHAAKGLEWGTVFLIGASDGYLPISMADTPEAIEEERR 535

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
           L  +        L   +S     G+        ++D    ++           S      
Sbjct: 536 LLYVGVTRARDRLVVSWSGARTPGARATRRPSRFLDGTASILGDGARSQPKRGSRVGGGA 595

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
           G    ++         G +     + T           +  +    E+           A
Sbjct: 596 GAKTPKVARRSVCRTCGADLSTAAERTVGRC---ATCPATYDEALFERLREWRLATARGA 652

Query: 692 NGTRHLIYTRSLRENNIPTIASRW 715
               ++++T +          S  
Sbjct: 653 AVPAYVVFTDATLTAIAEQTPSDL 676


>gi|159463540|ref|XP_001690000.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283988|gb|EDP09738.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 4666

 Score = 51.5 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 46/534 (8%), Positives = 129/534 (24%), Gaps = 29/534 (5%)

Query: 372  ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
              +A AL         + A +   R    R+     R  +     A    S    +  L 
Sbjct: 529  RHMAAALEAWSRYAHDRRARLVQLRGFYLRLASRRARAVLLGWRGAAAAQSPQAAARFLD 588

Query: 432  SLLNAIFKLNDFMAIATLV-----------KHPLAKFGFPEKYLSRAKNALELVALRGNK 480
            +L   +   +    +  L+           +                   +     R  +
Sbjct: 589  TLQRLVSGEHRRGVLRRLLAAWRRMAADGVRQADTAEAMLRVRTRSRAAEVLRQWHRVLQ 648

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
            +   + +    V  + A +K            +      A++      + ++  +     
Sbjct: 649  HQAWMQEQLLAVYRQGAVRKVLQSWAEVAVGKARLASTAALVGRRLWRRRLSLALGGWRA 708

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP--NLWFEEEGKTLSSLFSKIIETGSCI 598
              +   +   +   + TV+  + +     R+      W     +        ++ T    
Sbjct: 709  LAARVHSQWNAAGARATVSLARRMLRGWRRQCDVSRTWQGALVRCRGRHERALLATSLRA 768

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
              N +     ++ L                        RL +F  L+       +     
Sbjct: 769  LHNRVSLQQRVSALARRCGAALARRAVRGWRQQALAGLRLQSFGRLLHAKWRRTLSRAVL 828

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
                  +      L+L          A +                 +     +    L +
Sbjct: 829  RSWFLAAHSASLQLHLL-----EALEAANLTSTTSAGT------GGDVAGYYVPPVRLAK 877

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            L         + L+        +T  L     +   +  +       +    S + ++  
Sbjct: 878  LASRARRRATEVLRA-WHSRASYTAGLSRAGARLQRRCRQLLLGSCFRGWRSSVTAVRA- 935

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-EINHLMKQ 837
                  +  RR +K   +   +     T R       + E++ +R+ +     +   +++
Sbjct: 936  RRGTAMLLVRRAVKALGVECLRAWRQATARAVRLRRTLLEVLARRVERTKRVVLLGWLEE 995

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
            + ++   +E +             +   ++   E    +   +           
Sbjct: 996  VHETRLRREEVRCVKADARLARMGRTLRAW--QEAVTAAGAVRAVAERRFTATW 1047



 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 77/727 (10%), Positives = 165/727 (22%), Gaps = 65/727 (8%)

Query: 99   LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
            L   VS   R   L RL+  WR    D ++       +    + + A   A+ L     +
Sbjct: 590  LQRLVSGEHRRGVLRRLLAAWRRMAADGVRQADTAEAMLRVRTRSRA---AEVLRQWHRV 646

Query: 159  IETEEKKWEDLHAL----KNEKYGMWWLLA----ADFLKIASKYWTERLVELNASSPVGY 210
            ++ +    E L A+       K    W       A     A+           + +  G+
Sbjct: 647  LQHQAWMQEQLLAVYRQGAVRKVLQSWAEVAVGKARLASTAALVGRRLWRRRLSLALGGW 706

Query: 211  QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
            +    R  ++    G +  + +A          R++       + +    G         
Sbjct: 707  RALAARVHSQWNAAGARATVSLA---------RRMLRGWRRQCDVSRTWQGA----LVRC 753

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                       +          Q  ++ L              G     + G  +     
Sbjct: 754  RGRHERALLATSLRALHNRVSLQQRVSALARRCGAALARRAVRGWRQQALAGLRLQSFGR 813

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE-AISIAIALRMSLDENKKKS 389
             L        +  +L +           + L+EA       + + A              
Sbjct: 814  LLHAKWRRTLSRAVLRSWFLAAHSASLQLHLLEALEAANLTSTTSAGTGGDVAGYYVPPV 873

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
             L        RR    L  +      +AG     +   + L                  L
Sbjct: 874  RLAKLASRARRRATEVLRAWHSRASYTAG----LSRAGARLQRRCR------------QL 917

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
            +     +         RA+    ++ +R    +  +  L++         +    +    
Sbjct: 918  LLGSCFRGWRSSVTAVRARRGTAMLLVRRAVKALGVECLRAWRQATARAVRLRRTLLEVL 977

Query: 510  SRLSEEDKELAVLLV----DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
            +R  E  K + +L               +   K +        ++  W +  VT    V 
Sbjct: 978  ARRVERTKRVVLLGWLEEVHETRLRREEVRCVKADARLARMGRTLRAWQEA-VTAAGAVR 1036

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                R+    W   + + L    +        ++ +       +  +      +      
Sbjct: 1037 AVAERRFTATWMRFKREVLLVWRN-------VVELSQQHLATCVRLVRKRMERRCAAAVL 1089

Query: 626  STLFILGTLESRLLN-FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
                     E      +  L    +   +  +                     E+     
Sbjct: 1090 GGWRTYARHERERRENWPLLCRANMCLAMLLRRVFLAWLTLVQPAGRAAQAARERQERLE 1149

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL--KKRGQCYLDWT 742
              + E A   R    +   R+       +        L            +      +  
Sbjct: 1150 RLEQESAAARR----STQQRDITAAAPQASAASISPALPADSGSSMPTALRAATVAPEAA 1205

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS-----EIKQLINDPYAVYARRILKLDFIP 797
                  +       P P P         + S     E  +    P    A  +  L  + 
Sbjct: 1206 PVASPVSVTGPAAAPMPSPSAPVSATAAAASAAAAGEDARPAPTPAGAEAPDLGSLPSLR 1265

Query: 798  HFKKDPD 804
                 P 
Sbjct: 1266 PIIVGPS 1272


>gi|254244904|ref|ZP_04938226.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 2192]
 gi|126198282|gb|EAZ62345.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 2192]
          Length = 1245

 Score = 51.5 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 76/866 (8%), Positives = 185/866 (21%), Gaps = 108/866 (12%)

Query: 196  TERLVELNASSPVGYQIALMR----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +R  E+     +      ++         L++      +I     + P   R+   +  
Sbjct: 361  KQRRAEIGFDDLLSRLDRALQGPGGERLAQLIREQFPVALIDEFQDTDPMQYRIFERIYR 420

Query: 252  HPNG--------AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
                          +    D       +      +       T    +      +    +
Sbjct: 421  IAADPDEPQARETGLFMIGDPKQAIYAFRGADIHTYLRAREATRGRHYTLGKNFRSTAAM 480

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF------- 356
                               R          P  +           I   +          
Sbjct: 481  VAAANRCFAFAEEHPRGAFRFAREGLENPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLD 540

Query: 357  -SDVALIEADNEREEAISIAIALRMSL------------------DENKKKSALITADRN 397
                 L  A   +E A   A A+R  L                         A++   R 
Sbjct: 541  VEAGVLGSAAYRQEMAERSASAIRRWLSLADLGRAGFADEQGGWRALRPADIAILVRGRA 600

Query: 398  LARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH---P 453
             A  ++  L  R   ++ +S    +  +  ++ L   L A         +   +      
Sbjct: 601  EAEAIRSALAARRLASVYLSDRDSVFDSQEAADLLHWLRACADPGADTLLRVALATRSLH 660

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L                  ++  R  + S+    +  ++   +A  +    +   +    
Sbjct: 661  LDWATLERLNQDELFWERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLL--RHADG 718

Query: 514  EEDKELAVLLVDHILQCITPL--VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            E      + L + + +    L          +       S+      +    + +    K
Sbjct: 719  ERSLTNLLHLAEWLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHK 778

Query: 572  LPNLWFEEEGKTLSSLFSKI-----IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
               L +          + ++               A   I++  R         +     
Sbjct: 779  SKGLEYPLVLLPFICSWRELDGNSGAPASFHEDGAAGRVIELARRKEQAARAYEQANDER 838

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
                +  L   L      +  G+   V   + +       +        T          
Sbjct: 839  LGEDMRLLYVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCL 898

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                      ++      E      A R++       G         R + ++     L 
Sbjct: 899  AALRGECREIVV------EPAPEADAERYVAGRGQGLGQARETRRSSREKWWVASYSGLQ 952

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                               +P +   +   +              ++       + P   
Sbjct: 953  LQASAGLDDDEVLESDESQEPISAEEATFHEEGRSAEQPPVAHASEMR--DDLHRFPRGP 1010

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH-FEKENLPPHIDIIWRHLFHKISH 865
              GT  H ++    ++  +    +     + +                 +W     +   
Sbjct: 1011 APGTFLHGLLEWAGREGFDVARADAQRRRELVARRCDLRGWKDWAEPLDLW---LEQYLA 1067

Query: 866  SFLEHE--EKIQSSIEKIFVNIPA-----------------KMAIES----------IGI 896
              L     E   + +    V +                   +  +            +  
Sbjct: 1068 EPLRWPGGETSLAGLVAYQVEMEFWFATHQVQAEAIDALVRRHTLGGAARPALAPTLLNG 1127

Query: 897  HLTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAAALK 945
               GF D +   + G   + DYK+            +       +   D Q  L   AL 
Sbjct: 1128 MFKGFVDLVFEHQ-GRFYVADYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALH 1186

Query: 946  AGSFSQID----CRKVANLFYIRLKQ 967
                +++      R +    Y+ L+ 
Sbjct: 1187 RQLKARLPDYDYDRHMGGAVYLFLRG 1212


>gi|119896636|ref|YP_931849.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
 gi|119669049|emb|CAL92962.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
          Length = 700

 Score = 51.5 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 61/587 (10%), Positives = 151/587 (25%), Gaps = 82/587 (13%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK--------S 80
           TL     +   N      + +   ++RA  E+      I  + +   P +         +
Sbjct: 56  TLAHRVAHLIANGADPGRILLLTFSRRAADEMGRRVQRILAQVAVDTPWLAQATLQWSGT 115

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQR-----LLELARLILIWRNKLPDIIKDLYPESP 135
              +       +      L+P  +   R     L+ LAR       +           + 
Sbjct: 116 FHGIGARLLR-EYAGRIGLDPAFTIHDREDSADLMNLARHEAGLSTRNKRFPLKGTCLAI 174

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
            S  ++      LA+ L                           W       LK   + +
Sbjct: 175 YSAAVNTRA--PLAEVLQTTF----------------------PWCAEWEAELKTLFRAY 210

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKG----PIIIAGSTGSIPATARLMSTVAN 251
            +              +      AE  +    G     +++     +    A ++  +A 
Sbjct: 211 VQAKQAQQVLDYDDLLLYWAHMVAEPALGAEIGGLFQHVLVDEYQDTNHLQAEIL--LAM 268

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
            P+G  +    D       +   T ++     +      H                    
Sbjct: 269 KPDGRGLTVVGDDAQSIYAFRGATIRNILDFPARFEPPAH-------------------- 308

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                   +              +    +  +     + ++++  +   L+   ++ +++
Sbjct: 309 -----RVTLEQNYRSTRPILDAANAVIAQAAERYSKDLWSLRESTARPQLVSVRDDADQS 363

Query: 372 ISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
             +   +    ++    K+ A++    + + R+++ELTR  I      G+      H   
Sbjct: 364 AFVVERVLARREQGIKLKQQAVLFRAASHSARLEMELTRRNIPFVKFGGLKFLEAAHVKD 423

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           + ++L  +  L D ++   +V+  +         +     A             +  +L 
Sbjct: 424 MLAVLRWVENLRDRVSGFRVVQLLVGIGPKTAGKVLDHVVAA-----------PEGCELL 472

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
           +      A + +          L   D                 +     +     G++ 
Sbjct: 473 AEQPVPEAARADWQAFSTLIEHLRRPDAPWPASFELACRWYEGQMPRLYDDAVVRQGDIQ 532

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                  T    Q    +     P+   +E G  L      I+ T  
Sbjct: 533 QLGRIAATYPSRQRFLTELTLDPPSATSDEAGVPLLDEDYLILSTMH 579


>gi|170730900|ref|YP_001776333.1| exodeoxyribonuclease V subunit beta [Xylella fastidiosa M12]
 gi|167965693|gb|ACA12703.1| exodeoxyribonuclease V beta chain [Xylella fastidiosa M12]
          Length = 1242

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 92/884 (10%), Positives = 221/884 (25%), Gaps = 103/884 (11%)

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            + + + +  +  +    +++AL+R+  +          ++     +  A  R+   V   
Sbjct: 393  QTYDDLIQRVAQALDGPHRLALVRSLRQQ-----YRMALVDEFQDTDVAQWRIFHHVFGD 447

Query: 253  PNGAI-------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
               A        +    D       +      +    ++    +   + +       L  
Sbjct: 448  TEHAHTADLTPALFLIGDPKQAIYGFRGGDVHTYLAAAARAERAPPLERNFRSRPLLLRA 507

Query: 306  KREDVKRLGNVS------------NEMYGRSMVISKSFLPPDTSDMRNTDIL-------- 345
                  + G+ +               + R   +S + +P     +              
Sbjct: 508  IEALYTQAGDAAFLTPGIAFHPVQPGTHCRDTDLSNAGVPAPALQVWQAPPPLDSTAKGK 567

Query: 346  -ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
             +    +  +     A + A ++         AL           A++      A  ++ 
Sbjct: 568  PKPWNADAARALCTDACVHAIHQWLADAQTGRALLDGRPVGAGDIAVLVRSHREATLMQQ 627

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK-- 462
             L R GI    +    L TT  ++   +LL A+    D   + T +   L          
Sbjct: 628  ALARAGIPAVAAGKRSLLTTDEANEALALLLALLHSADEGRLRTALSTVLVGLTAETIAT 687

Query: 463  -YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                   +          +          L+ D  A             R      +L  
Sbjct: 688  FDHDSVASRHWQRQALHWRERLHSGGPLGLLTDLCALHAARLLSLFDGERRLSNYLQLGE 747

Query: 522  LLVDHILQCIT--PLVTYKTNKNSTCGNLSISDWTKL----------------------- 556
            LL    L+ +    LV +   + +   N   +   +L                       
Sbjct: 748  LLQQVHLRALGLHGLVDWLARRIAEAKNDDETQLLRLESDARRVQIVTLHKSKGLEYPLV 807

Query: 557  -TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                           +   +   ++G+ L     K        +    +      +  + 
Sbjct: 808  FLPYVAIGRSHAGPGRYCVVHDAQQGRCLHWCLDKQAPEWQRAETAWKQ-----EQRAEE 862

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       +   +     +      T +   L +           F + V  + L   
Sbjct: 863  ARLLYVGLTRAKHALWIATGTFYQTEHTPLWPLLGDPQAVPAQPGIVFDTAVPPAILPRL 922

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            T E+      H    A   +  + +     +      +   +      G          G
Sbjct: 923  TPEQP-----HSVPPARTAQRALLSDWWVYSFTQLAHA---KAEPAPDGGRRIAEPLTGG 974

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
            Q    W         Q      +           +  +  +      +  ++     +  
Sbjct: 975  QDEPAWP----QDAIQQPLPGSEVPAAPRFTGIRFGVALHEVFERTDFLAWSTWRANVPV 1030

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                +    +  R + +   + E ++  +   TP + H +  ++       ++P      
Sbjct: 1031 PATERGVLLQALRSSGY---VAEDVEAGVALLTPLVGHTLTSVLPEGVRLCDVPTTERRP 1087

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
                   I  + ++    +      +       M     G+ +TG  D I     G   +
Sbjct: 1088 EIEFQFVIQATAVDALLALLHDHGLLQQRQSFGMRRRLEGL-MTGMIDLIYRHA-GRWYV 1145

Query: 916  TDYKTGDNP-------KKETAQKLIDPQLSLEAAALKAGSFSQID-----CRKVANLFYI 963
             DYK+   P                D Q  +   AL      ++       R +  + Y+
Sbjct: 1146 LDYKSNRLPDYTPAHLSVAMTDSEYDLQALIYTVALHRWLRFRLRDAYDYARDMGGIRYL 1205

Query: 964  RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
              +         +  +  +A   ++     LIE V  + +G  P
Sbjct: 1206 FCRG-------MDATRPDAAGVYTQSFAPALIEAVDAMFSGACP 1242


>gi|218893376|ref|YP_002442245.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa LESB58]
 gi|218773604|emb|CAW29418.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa LESB58]
          Length = 1245

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 76/866 (8%), Positives = 183/866 (21%), Gaps = 108/866 (12%)

Query: 196  TERLVELNASSPVGYQIALMR----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +R  E+     +      ++         L++      +I     + P   R+   +  
Sbjct: 361  KQRRAEIGFDDLLSRLDRALQGPGGERLAQLIREQFPVALIDEFQDTDPVQYRIFERIYR 420

Query: 252  HPNG--------AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
                          +    D       +      +       T    +      +    +
Sbjct: 421  IAADPDEPQARETGLFMIGDPKQAIYAFRGADIHTYLRAREATRGRHYTLGKNFRSTAAM 480

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF------- 356
                               R          P  +           I   +          
Sbjct: 481  VAAANRCFAFAEEHPRGAFRFAREGLENPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLD 540

Query: 357  -SDVALIEADNEREEAISIAIALRMSL------------------DENKKKSALITADRN 397
                 L  A   +E A   A A+R  L                         A++   R 
Sbjct: 541  VEAGVLGSAAYRQEMAERSASAIRRWLSLADLGRAGFADEQGGWRALRPADIAILVRGRA 600

Query: 398  LARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH---P 453
             A  ++  L  R   ++ +S    +  +  +  L   L A         +   +      
Sbjct: 601  EAEAIRSALAARRLASVYLSDRDSVFDSQEAIDLLHWLRACADPGADTLLRVALATRSLH 660

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L                  ++  R  + S+    +  ++   +A  +    +   +    
Sbjct: 661  LDWATLERLNQDELFWERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLL--RHADG 718

Query: 514  EEDKELAVLLVDHILQCITPL--VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            E      + L + + +    L          +       S+      +    + +    K
Sbjct: 719  ERSLTNLLHLAEWLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHK 778

Query: 572  LPNLWFEEEGKTLSSLFSKI-----IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
               L +          + ++               A   I++  R         +     
Sbjct: 779  SKGLEYPLVLLPFICSWRELDGNSGAPASFHEDGAAGRVIELARRKEQAARAYEQANDER 838

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
                +  L   L      +  G+   V   + +       +        T          
Sbjct: 839  LGEDMRLLYVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCL 898

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                      ++      E      A R++       G         R + ++     L 
Sbjct: 899  AALRGECREIVV------EPAPEADAERYVAGRGQGLGLARETRRSSREKWWVASYSGLQ 952

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                               +P +   +   +              ++       + P   
Sbjct: 953  LQASAGLDDDEALESDESQEPISAEEATFHEEGRSAEQPPVAHASEMR--DDLHRFPRGP 1010

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH-FEKENLPPHIDIIWRHLFHKISH 865
              GT  H ++    ++       +     + +                 +W     +   
Sbjct: 1011 APGTFLHGLLEWAGREGFEVARADAQRRRELVARRCDLRGWKDWAEPLDLW---LEQYLA 1067

Query: 866  SFLEHE--EKIQSSIEKIFVNIPA-----------------KMAIES----------IGI 896
              L     E   + +    V +                   +  +            +  
Sbjct: 1068 EPLRWPGGETSLAGLVAYQVEMEFWFATHQVQAEAIDALVRRHTLGGAARPALAPTLLNG 1127

Query: 897  HLTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAAALK 945
               GF D +   + G   + DYK+            +       +   D Q  L   AL 
Sbjct: 1128 MFKGFVDLVFEHQ-GRFYVADYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALH 1186

Query: 946  AGSFSQID----CRKVANLFYIRLKQ 967
                +++      R +    Y+ L+ 
Sbjct: 1187 RQLKARLPDYDYDRHMGGAVYLFLRG 1212


>gi|28868005|ref|NP_790624.1| exodeoxyribonuclease V subunit beta [Pseudomonas syringae pv. tomato
            str. DC3000]
 gi|28851241|gb|AAO54319.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato
            str. DC3000]
          Length = 1230

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 100/957 (10%), Positives = 219/957 (22%), Gaps = 134/957 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A             +   +   + L   
Sbjct: 271  FEKLAAWAADETQEALDLGTGFTRLTPDGVAEAWKSDPPSHPAFAAMAQLKAALDGLPKP 330

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++   W+ +A F +        R  E+     +      +          L++  
Sbjct: 331  DAAVLQHAAQWV-SARFEEE-----KRRRAEMGFDDMLLRLDGALHGAGGERLATLIREQ 384

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  ++           +    D       +      +     
Sbjct: 385  FPVALIDEFQDTDPVQYRIFDSIYRLEGNDEQTGLFLIGDPKQAIYAFRGADIYTYLRAR 444

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T    H   +  +    +      V        E  G  +   +       SD     
Sbjct: 445  QATDGRWHTLDTNYRSSHAMVESVNHVFTRAEQRPEGKGAFLFRDEEGNQVPFSDALAQG 504

Query: 344  ILENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK-------- 387
              E    +     +  V  +E++         ++ A   A  +   L+  ++        
Sbjct: 505  RKETLEVDGAALTALTVWHLESEQPVSGVVYRQQLASRCASEIVRLLNAGQQGRAGFTAP 564

Query: 388  ----------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                        A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A
Sbjct: 565  GNAQRGLRPADIAILVRDGKEAQAVRSQLTARGVRSVYLSDKDSVFAAQEAHDLLSWLKA 624

Query: 437  IFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              +        A    +   L                  ++  RG +  +    +  ++ 
Sbjct: 625  CAEPDSERTLRAALACITLDLPLAELERLNQDELAWEQRVMQFRGYRAVWRSQGVLPMLR 684

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +        +        E      + L + + Q    L   +        +L++S  
Sbjct: 685  RLLHDFALPQTLM--TRTDGERVLTNLLHLSELLQQAAAELDGEQALIRHLGDHLALSGQ 742

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-- 611
                    Q + L+   +L  +    + K L      +    S    +            
Sbjct: 743  AGE----EQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDAD 798

Query: 612  ------LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                  L   E +  + +       L  L   L   +     G+ +       +     S
Sbjct: 799  GRAQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNANSSMLHRS 858

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             +           +         ++A G   +      +    PT  S    R       
Sbjct: 859  ALGYLLGGGTALPESADLKVWLRDLAEGCSAIAL----QPVPEPTDDSFSAPRNEASLVK 914

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                  +     ++     L             P  P             ++L +D    
Sbjct: 915  LLVPKRRAAENWWIASYSALRIGDTVTAGADESPDSPQA-----------QKLFDDERLD 963

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                   L       + P   + GT  H ++     +       +   L   +      +
Sbjct: 964  PEAPRDILVSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFANTAHDSVQLQDAVARRCNRR 1023

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-----------VNIPAKMAIESI 894
                      W +         L    ++      +            V +    A  ++
Sbjct: 1024 G------WAGWINTLRDWLQHMLNMPLRLSPDSTPVALGDLNQPNQYRVEMEFWFASTNV 1077

Query: 895  GIH---------------------------LTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
             +                              GF D     + G   + DYK+      +
Sbjct: 1078 NVAQMDTLVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHE-GRYYVADYKSNWLGSDD 1136

Query: 928  TAQKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKF 969
             A               D Q  L   AL     +++      + +    Y+ L+   
Sbjct: 1137 DAYTDLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYDYDQHMGGALYLFLRGSR 1193


>gi|15599480|ref|NP_252974.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PAO1]
 gi|9950504|gb|AAG07672.1|AE004844_4 exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PAO1]
          Length = 1245

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 76/866 (8%), Positives = 185/866 (21%), Gaps = 108/866 (12%)

Query: 196  TERLVELNASSPVGYQIALMR----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +R  E+     +      ++         L++      +I     + P   R+   +  
Sbjct: 361  KQRRAEIGFDDLLSRLDRALQGPGGERLAQLIREQFPVALIDEFQDTDPVQYRIFERIYR 420

Query: 252  HPNG--------AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
                          +    D       +      +       T    +      +    +
Sbjct: 421  IAADPDEPQARETGLFMIGDPKQAIYAFRGADIHTYLRAREATRGRHYTLGKNFRSTAAM 480

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF------- 356
                               R          P  +           I   +          
Sbjct: 481  VAAANRCFAFAEEHPRGAFRFAREGLENPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLD 540

Query: 357  -SDVALIEADNEREEAISIAIALRMSL------------------DENKKKSALITADRN 397
                 L  A   +E A   A A+R  L                         A++   R 
Sbjct: 541  VEAGVLGSAAYRQEMAERSASAIRRWLSLADLGRAGFADEQGGWRALRPADIAILVRGRA 600

Query: 398  LARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH---P 453
             A  ++  L  R   ++ +S    +  +  ++ L   L A         +   +      
Sbjct: 601  EAEAIRSALAARRLASVYLSDRDSVFDSQEAADLLHWLRACADPGADALLRVALATRSLH 660

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L                  ++  R  + S+    +  ++   +A  +    +   +    
Sbjct: 661  LDWATLERLNQDELFWERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLL--RHADG 718

Query: 514  EEDKELAVLLVDHILQCITPL--VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            E      + L + + +    L          +       S+      +    + +    K
Sbjct: 719  ERSLTNLLHLAEWLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHK 778

Query: 572  LPNLWFEEEGKTLSSLFSKI-----IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
               L +          + ++               A   I++  R         +     
Sbjct: 779  SKGLEYPLVLLPFICSWRELDGNSGAPASFHEDGAAGRVIELARRKEQAARAYEQANDER 838

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
                +  L   L      +  G+   V   + +       +        T          
Sbjct: 839  LGEDMRLLYVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCL 898

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                      ++      E      A R++       G         R + ++     L 
Sbjct: 899  AALRGECREIVV------EPAPEADAERYVAGRGQGLGQARETRRSSREKWWVASYSGLQ 952

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                               +P +   +   +              ++       + P   
Sbjct: 953  LQASAGLDDDEVLESDESQEPISAEEATFHEEGRSAEQPPVAHASEMR--DDLHRFPRGP 1010

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH-FEKENLPPHIDIIWRHLFHKISH 865
              GT  H ++    ++  +    +     + +                 +W     +   
Sbjct: 1011 APGTFLHGLLEWAGREGFDVARADAQRRRELVARRCDLRGWKDWAEPLDLW---LEQYLA 1067

Query: 866  SFLEHE--EKIQSSIEKIFVNIPA-----------------KMAIES----------IGI 896
              L     E   + +    V +                   +  +            +  
Sbjct: 1068 EPLRWPGGETSLAGLVAYQVEMEFWFATHQVQAEAIDALVRRHTLGGAARPALAPTLLNG 1127

Query: 897  HLTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAAALK 945
               GF D +   + G   + DYK+            +       +   D Q  L   AL 
Sbjct: 1128 MFKGFVDLVFEHQ-GRFYVADYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALH 1186

Query: 946  AGSFSQID----CRKVANLFYIRLKQ 967
                +++      R +    Y+ L+ 
Sbjct: 1187 RQLKARLPDYDYDRHMGGAVYLFLRG 1212


>gi|315504945|ref|YP_004083832.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315411564|gb|ADU09681.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 553

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/347 (10%), Positives = 89/347 (25%), Gaps = 34/347 (9%)

Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
             A A   ++ T   + +           RL+         A++    D      +W   
Sbjct: 150 ANAYARGGIRQTYRHVFLDEFQDCTTQQYRLIKAAFGQSP-ALLTAVGDTKQRIMVWAGA 208

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
            +      + + +    P Y   +    L   +  +    +                   
Sbjct: 209 LDGVLQTFAEDFSARPLPLYQNFRSAPRLRRMQNRMIAQMDPEAVSPA------------ 256

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--KKKSALI 392
                           ++      + ++  D E +EA ++A  +   L E+    + A++
Sbjct: 257 ---------------QDLAGDDGIIEVLHFDTEHDEAQAVADLIEGWLKESVAPSEIAIL 301

Query: 393 TADRNL--ARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
              +    A  +  EL   GI          L+    ++++ + +  +       A A L
Sbjct: 302 VRQQPHLVAAALGSELRGRGIPFRNEQESQDLAAEPAAALVFNFIRVVADDRQPDAYAEL 361

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
           ++         E+          ++            + +          +    V    
Sbjct: 362 MRIANRLSASEEEASRFDSQLKRMLGTARAAVRDPAFEAEKPGAWSPLVHEFLQLVSRPV 421

Query: 510 SRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTK 555
                   +    L D I Q +         + N+      +S+   
Sbjct: 422 LTALLPGYQQGKRLDDVIEQALEAFGRELVVDGNAVQALRRLSEVEA 468


>gi|304436811|ref|ZP_07396777.1| ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 149 str.
            67H29BP]
 gi|304370183|gb|EFM23842.1| ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 149 str.
            67H29BP]
          Length = 1264

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 22/159 (13%)

Query: 800  KKDPDRTDRGTLFHNIITEL-IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
            +      +RGT  H ++  L   +  +         +++   S F++  L       ++ 
Sbjct: 1085 RAALSPMERGTAMHALMQHLDFAEVPD------IAAIERQARSLFDQGILTEEA---YQS 1135

Query: 859  LFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIES-----------IGIHLTGFADRID 906
            L  +    F+      +    ++++  +P    + +             I L G  D + 
Sbjct: 1136 LDVRNVWRFVSSALGRRLREAKRVYRELPFGRLLPAKKYYKEAQDEADRIFLQGIIDVLF 1195

Query: 907  LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
              ++G   + DYKT  +   + A+     Q+ L   A++
Sbjct: 1196 EEENGDYILLDYKTDRHISPQDARTRYQFQIDLYCDAVE 1234


>gi|257052788|ref|YP_003130621.1| hypothetical protein Huta_1715 [Halorhabdus utahensis DSM 12940]
 gi|256691551|gb|ACV11888.1| conserved hypothetical protein [Halorhabdus utahensis DSM 12940]
          Length = 860

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/684 (8%), Positives = 152/684 (22%), Gaps = 83/684 (12%)

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
            P      + D  +        L   +      +  +    L    +  +     E +  
Sbjct: 1   MPVQRARSIDDLFEAVAGYDLVLTVDAPLSLALNRRLDHPRLGRFAATPQMLAADEFRPQ 60

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALI---------TADRNLARR 401
           + ++ F +V + +     ++A  +   +    +E   + A++         T +      
Sbjct: 61  DQRQLFVEV-IDKTALPWKQAAHLVELILGCWEETGDRQAILEYDRYDTTATREVLEVIA 119

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA--TLVKHPLAKFGF 459
                 R      I     ++    S       + +    D +          P      
Sbjct: 120 SVASAHRDLDTYRIDEDRDVAVIGESQFSALDRSILPAEYDTIDPLTSEAFDLPAFHSFA 179

Query: 460 PEKYLSRAKNALELVALRGN-KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
               +  A           +     D       +++     ++           +E  + 
Sbjct: 180 SRTAIVEAIVDNVTSDNADDVAIVMDRGGPFPALIESALEARDIPFYGGPGFADNEGLRT 239

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
              LL          +   +        +  + D  KL                 N+   
Sbjct: 240 FLELLRLAHADSRARVGDVRPIARGLGIDFPVDDEDKLLAELGSPAAEPIQAFCANVPEW 299

Query: 579 EEGKTLSSL-------FSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEKSSTL 628
             G+ +             + +    +        D     ++        P   + S +
Sbjct: 300 TFGEAIREFEELSNQTLDAVRDELGVLGLVDEPVTDGRLDDLEFYLSAFDVPIDREDSGV 359

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
            +     S  ++   +   GL           +   +  +     + T  K         
Sbjct: 360 LLADANTSTYVDRPAVFYLGL-----------DADWTHQVIDRPWIDTERKDREHLRQFQ 408

Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
            +    R   Y         P     +   LL      F D                   
Sbjct: 409 LLLQNGREQYYLVQETSAGEPVRPCLYFHDLLDDDIETFDDFGTIPHTYRRGDGSTGFEH 468

Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                   P           T S S +   +N P   +  ++++     +F+       +
Sbjct: 469 DPVSAAPEP---------IETISQSSLSTFVNCPRDYFFDQLVEQPDRDYFR-------K 512

Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISHS 866
           G  +H+   E      +         +  +         + +   +      +  ++   
Sbjct: 513 GNCYHD-FAEFYVNHPDVIADADRAELVDLFLDELRPFVDQVDRDVLETEFDVGLELIGR 571

Query: 867 FLE---------HEEKIQSSIEKIF-----------VNIPAK-MAIESIGIHLTGFADRI 905
           F++          E ++      +                 +   +        G  D I
Sbjct: 572 FIDENPPVERDYSEYEVLPFGNLVADYFDHPIDSPITEQWFENPELGG-----KGKVDLI 626

Query: 906 DLLKSGFVDITDYKTGDNPKKETA 929
               +    + DYK+G        
Sbjct: 627 -HSPTQ---LLDYKSGSAKSASQV 646


>gi|312602471|ref|YP_004022316.1| exodeoxyribonuclease V subunit gamma [Burkholderia rhizoxinica HKI
            454]
 gi|312169785|emb|CBW76797.1| Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) [Burkholderia
            rhizoxinica HKI 454]
          Length = 1251

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 88/858 (10%), Positives = 201/858 (23%), Gaps = 101/858 (11%)

Query: 57   IQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
             + +   F      +   L    +   +   +             P+    +  + A   
Sbjct: 250  ARRIACVFDHYLTYRPHWLAQWLAGESIFAPRRQPGGAPRLADATPI----QRADEAWQA 305

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
             +WR+ L ++       +     +SP    +L+      +D I   +             
Sbjct: 306  QLWRDVLGELAGGHDAGADALERMSPPAYRFLSIASQLDLDDIARAD------------- 352

Query: 177  YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST 236
                              W  ++      +     + L+R  +           I     
Sbjct: 353  ------------------WPAQVSVFALPTMPPLHVQLLRELSRW---------IDVRIY 385

Query: 237  GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
               P        V      A+   G                       +     HP  + 
Sbjct: 386  ALNPCREYWFDIVTQRHADALDAAG---------------------QLDYQTVGHPLLAE 424

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
                    +        G V+ E        + S+L    + + + +   +  P   +  
Sbjct: 425  WGRQTQAQLALLHEHTEGAVAGESSEFVEAPACSWLAVVQNAILSLEHPVSPSPPPAR-- 482

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLEL------ 406
            + + +    +   +   +   L    D +         +   D   A  +   +      
Sbjct: 483  NGIEVYVCHSLARQFEVLHDRLLAEFDADPSLTPADVLIAVPDLIAAAPIVDAVFGAVPP 542

Query: 407  -TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-- 463
                 I   ++   P      +  L   L    +  +  A+   ++       +      
Sbjct: 543  SDPRRIPYRVTGLPPSQANPLARTLLDWLALAERDVNASALVEWLRVDAVAARYDIDPVA 602

Query: 464  ------LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                        A    A R  ++        +                           
Sbjct: 603  LDTVQGWLANAGARRSFAPREQRDLDAPRARHTFADALTRLFLGYAMPDDALPIGDWLPV 662

Query: 518  ELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
              +      +L  +   V        +     +++ W  + +  L+           +L 
Sbjct: 663  AASTGADAMLLGRLAQFVDELDAFALACATPHTVAQWRNVLLAALEQFFDARGPNADSL- 721

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
              E    L +LF +I          A      +  ++D          S  + +      
Sbjct: 722  -SELRDALDALFVQIEAGAPHTPLPAAVLRTALLSVLDD--PARGGVPSGAVTVSPLSSL 778

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
            R + F  + + G+++GV P     + F      +    +           D  M      
Sbjct: 779  RGVPFRVVCMAGIDDGVLPTRARADEFDLMAAFAQPGDRQRRDDERNLFLDL-MLAARDT 837

Query: 697  LIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
            L+ + + R   +N     S  +  LL     D   +LK      LD       +    H 
Sbjct: 838  LLLSYTGRNIRDNAELPPSALVAELL-----DHLASLKAGEGASLDEIALARRSFVTEHP 892

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
             +P        Q    ++   +  +    A   RR+      P F        R T+  +
Sbjct: 893  LQPFALSYFSMQGPLLTYDADRAQVAAALADPTRRMEADAMPPFFGVALPADMRETIGLD 952

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH--EE 872
             +    +        E   ++     +                 L  ++    +E     
Sbjct: 953  ELARFWRHPQRALLRERLGIVLHRAQAPLPDTEPYEFDYAGRDALAGRLLPLLVESSAYA 1012

Query: 873  KIQSSIEKIFVNIPAKMA 890
            +    I +    +P    
Sbjct: 1013 ERAHEIARAIPELPGGAT 1030


>gi|302188703|ref|ZP_07265376.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            syringae 642]
          Length = 1230

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 98/922 (10%), Positives = 220/922 (23%), Gaps = 133/922 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
               +  W         DL        P   A A           + +   +   + L   
Sbjct: 271  FEKLAAWAADDTQEALDLGTGFTRLTPEGIAEAWKSDPPAHPAFEAMAQLKAALDGLPKP 330

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKG 228
                       AA ++    +    R  E+     +    A +          L++    
Sbjct: 331  DAAVL----QHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAALHGAGGERLATLIREQFP 386

Query: 229  PIIIAGSTGSIPATARLMSTVANHP---NGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
              +I     + P   R+  ++           +    D       +      +       
Sbjct: 387  VALIDEFQDTDPVQYRIFDSIYRLEANDEQIGLFLIGDPKQAIYAFRGADIYTYLRARQA 446

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
            T    H   +  +    +      V        +  G  +   +       SD       
Sbjct: 447  TDGRWHTLDTNYRSSHAMVDSVNHVFTRAEQREQGRGAFLFRDEQGNQVPFSDALAQGRK 506

Query: 346  ENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKKK--------- 388
            E    +     +  V  +++D         ++ A S A  +   L+  ++          
Sbjct: 507  ETLHVDGAPLTALTVWHLQSDQPVSGVVYRQQLAASCASEIVRLLNAGQQDRAGFVTPDN 566

Query: 389  ---------SALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                      A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A  
Sbjct: 567  ALRGLRPADIAILVRDGKEAQAVRQQLTARGVRSVYLSDKDSVFAAQEAHDLLSWLKACA 626

Query: 439  KLN---DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            + +      A    +   L                  ++  RG +  +    +  ++   
Sbjct: 627  EPDSERTLRAALACITLDLPLAELERLNQDELAWERRVMQFRGYRTIWRSQGVLPMLRRL 686

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            +        +      ++  D E  +  + H+ + +         + +           +
Sbjct: 687  LHDFALPQTL------MTRNDGERVLTNLLHLSELLQQAAAELDGEQA---------LIR 731

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                 L         ++  L  +E+   + ++          +    I            
Sbjct: 732  HLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFIC---------SS 782

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD-LNL 674
            + V             G  +  L   + LI    +E +          L+R   +  L +
Sbjct: 783  KPVDGSRLPLQFHDADGKSQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGV 842

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
               ++     +     A G                   S WL+ L   G       + + 
Sbjct: 843  ADLKRGNANTSMLHRSALG----YLLGGGAALAESAELSVWLRDLAQGGEAIALQPVPEP 898

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND--PYAVYARRILK 792
               +    R      K    KR        A        +      D  P +  A+++  
Sbjct: 899  TDEHFSAPRNAAALVKLLVPKRRAAENWWIASYSALRIGDTVTAGADESPDSPQAQKLFD 958

Query: 793  LDFIPHFKKD------------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             + +                  P   + GT  H ++     +         + L   +  
Sbjct: 959  DERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFAMTAHAPDKLQDAVAR 1018

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-----------VNIPAKM 889
                +          W +         L    ++      +            V +    
Sbjct: 1019 RCNRRG------WAGWINTLSDWLQHMLNMPMRLSPDAAPVALSELDQPNQYRVEMEFWF 1072

Query: 890  AIESIGIH---------------------------LTGFADRIDLLKSGFVDITDYKTGD 922
            A  ++ +                              GF D     + G   + DYK+  
Sbjct: 1073 ASNNVNVAQMDALVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHE-GRYYVADYKSNW 1131

Query: 923  NPKKETAQKLIDPQLSLEAAAL 944
                ++A      QL++E A L
Sbjct: 1132 LGSDDSAYT----QLAMETAIL 1149


>gi|107100131|ref|ZP_01364049.1| hypothetical protein PaerPA_01001152 [Pseudomonas aeruginosa PACS2]
          Length = 1245

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 76/866 (8%), Positives = 185/866 (21%), Gaps = 108/866 (12%)

Query: 196  TERLVELNASSPVGYQIALMR----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +R  E+     +      ++         L++      +I     + P   R+   +  
Sbjct: 361  KQRRAEIGFDDLLSRLDRALQGPGGERLAQLIREQFPVALIDEFQDTDPVQYRIFERIYR 420

Query: 252  HPNG--------AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
                          +    D       +      +       T    +      +    +
Sbjct: 421  IAADPDEPQARETGLFMIGDPKQAIYAFRGADIHTYLRAREATRGRHYTLGKNFRSTAAM 480

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF------- 356
                               R          P  +           I   +          
Sbjct: 481  VAAANRCFAFAEEHPRGAFRFAREGLENPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLD 540

Query: 357  -SDVALIEADNEREEAISIAIALRMSL------------------DENKKKSALITADRN 397
                 L  A   +E A   A A+R  L                         A++   R 
Sbjct: 541  VEAGVLGSAAYRQEMAERSASAIRRWLSLADLGRAGFADEQGGWRALRPADIAILVRGRA 600

Query: 398  LARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH---P 453
             A  ++  L  R   ++ +S    +  +  ++ L   L A         +   +      
Sbjct: 601  EAEAIRSALAARRLASVYLSDRDSVFDSQEAADLLHWLRACADPGADALLRVALATRSLH 660

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L                  ++  R  + S+    +  ++   +A  +    +   +    
Sbjct: 661  LDWATLERLNQDELFWERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLL--RHADG 718

Query: 514  EEDKELAVLLVDHILQCITPL--VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            E      + L + + +    L          +       S+      +    + +    K
Sbjct: 719  ERSLTNLLHLAEWLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHK 778

Query: 572  LPNLWFEEEGKTLSSLFSKI-----IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
               L +          + ++               A   I++  R         +     
Sbjct: 779  SKGLEYPLVLLPFICSWRELDGNSGAPASFHEDGAAGRVIELARRKEQAARAYEQANDER 838

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
                +  L   L      +  G+   V   + +       +        T          
Sbjct: 839  LGEDMRLLYVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCL 898

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                      ++      E      A R++       G         R + ++     L 
Sbjct: 899  AALRGECREIVV------EPAPEADAERYVAGRGQGLGQARETRRSSREKWWVASYSGLQ 952

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                               +P +   +   +              ++       + P   
Sbjct: 953  LQASAGLDDDEALESDESQEPISAEEATFHEEGRSAEQPPVAHASEMR--DDLHRFPRGP 1010

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH-FEKENLPPHIDIIWRHLFHKISH 865
              GT  H ++    ++  +    +     + +                 +W     +   
Sbjct: 1011 APGTFLHGLLEWAGREGFDVARADAQRRRELVARRCDLRGWKDWAEPLDLW---LEQYLA 1067

Query: 866  SFLEHE--EKIQSSIEKIFVNIPA-----------------KMAIES----------IGI 896
              L     E   + +    V +                   +  +            +  
Sbjct: 1068 EPLRWPGGETSLAGLVAYQVEMEFWFATHQVQAEAIDALVRRHTLGGAARPALAPTLLNG 1127

Query: 897  HLTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAAALK 945
               GF D +   + G   + DYK+            +       +   D Q  L   AL 
Sbjct: 1128 MFKGFVDLVFEHQ-GRFYVADYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALH 1186

Query: 946  AGSFSQID----CRKVANLFYIRLKQ 967
                +++      R +    Y+ L+ 
Sbjct: 1187 RQLKARLPDYDYDRHMGGAVYLFLRG 1212


>gi|148243810|ref|YP_001220049.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
 gi|146400373|gb|ABQ28907.1| ATP-dependent DNA helicase, Rep family [Acidiphilium cryptum JF-5]
          Length = 717

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/535 (9%), Positives = 137/535 (25%), Gaps = 56/535 (10%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQEL---RSEF-IEITGKKSTILPIIKSLGDV 84
           TL     +  +N +    + +   ++RA  E+        ++  G K+  +    +    
Sbjct: 66  TLAHRVAHLIVNGVDPRRILLMSFSRRAAAEMIRRAERISVQAMGGKTGAMTDALTWAGT 125

Query: 85  VE---EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
                 +   D      L+P  +   R              L ++++     S       
Sbjct: 126 FHGIGARLLRDYAEQIGLDPAFTIHDR---------EDSADLMNLVRHELGFSTTERRFP 176

Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
             +          I       E   +D+          W            +   +R   
Sbjct: 177 TKSTC------LSIYSRCVNTELSLDDILPTTFPWCSSWEAELQHLFGAYVEA-KQRQNV 229

Query: 202 LNASSPVGYQIALM-RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
           L+    + Y   ++        + G    +++     +    + ++  +   P G  +  
Sbjct: 230 LDYDDLLLYWAQMVSEPALAEDIGGRFDHVLVDEYQDTNRLQSSILLALK--PGGRGLTV 287

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D       +   T ++        +         A  +  L+        +   +N +
Sbjct: 288 VGDDAQSIYAFRGATVRNILDFPGAFSP--------AADIITLEQNYRSTTAILAAANGV 339

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
            G +       L  + +                       L+   ++ ++A  I   +  
Sbjct: 340 IGLAKERFTKNLWSNRTTETLPQ-----------------LVHVRDDADQARFIVERVLE 382

Query: 381 SLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
           + +     K+ A++    + +  +++ELTR  I      G+    + H   + ++L    
Sbjct: 383 NREAGMTLKQQAVLFRTSHHSGALEVELTRRNIPFVKFGGLKFLDSAHIKDVIAVLRWAE 442

Query: 439 KLNDFMA---IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
              D +A   +  L+               +                    D    +   
Sbjct: 443 NPRDRVAGFRVMQLLPGVGPTSAAKVMDHMQGAADPIGALGDAPTPPRARSDWTHFIETI 502

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
              +  +   P     +    +     + D     +  L+  +   +        
Sbjct: 503 RTLRSRSAIWPGELELIRRWYEPHLDRMHDDASVRLADLIQLEQIASGYPSRERF 557


>gi|238926789|ref|ZP_04658549.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas flueggei ATCC
            43531]
 gi|238885321|gb|EEQ48959.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas flueggei ATCC
            43531]
          Length = 1260

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 22/159 (13%)

Query: 800  KKDPDRTDRGTLFHNIITEL-IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
            +      +RGT  H ++  L   +  +         +++   S F++  L       ++ 
Sbjct: 1081 RAALSPMERGTAMHALMQHLDFAEVPD------IAAIERQARSLFDQGILTEEA---YQS 1131

Query: 859  LFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIES-----------IGIHLTGFADRID 906
            L  +    F+      +    ++++  +P    + +             I L G  D + 
Sbjct: 1132 LDVRNVWRFVSSALGRRLREAKRVYRELPFGRLLPAKKYYKEAQDEADRIFLQGIIDVLF 1191

Query: 907  LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
              ++G   + DYKT  +   + A+     Q+ L   A++
Sbjct: 1192 EEENGDYILLDYKTDRHISPQDARTRYQFQIDLYCDAVE 1230


>gi|239817530|ref|YP_002946440.1| exodeoxyribonuclease V, subunit beta [Variovorax paradoxus S110]
 gi|239804107|gb|ACS21174.1| exodeoxyribonuclease V, beta subunit [Variovorax paradoxus S110]
          Length = 1263

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 78/870 (8%), Positives = 191/870 (21%), Gaps = 80/870 (9%)

Query: 129  DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADF 187
             L    P++ P+    A  +A  LA +     T     + L  L            A   
Sbjct: 331  ALSELEPVATPMRLHAAFHIAARLATLKRQAGTFG-FADMLSRLDQALDPAGNVEAAERL 389

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG-----STGSIPAT 242
                   +   LV+         Q  +            +  +++ G       G   A 
Sbjct: 390  RSRIVAQYPVALVDE-FQDTSPVQARIFDRLYRIAENDRQTALLLIGDPKQSIYGFRGAD 448

Query: 243  ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
                        G   + G +     ++   +     +    +   +    +   +    
Sbjct: 449  IHSYLMARRATAGRHYMLGTNHRSTASVVAAVNHLLNHAEVRDGEGA----FMYRRPPAA 504

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            +    E+     +V+       +V +    P  T  +                     ++
Sbjct: 505  VGSPAENPLPFLSVAARGRTERLVGANGAAPAVTLALDAGLSRSAVSRRSFAARCAERIV 564

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            E  N+       A     +       + L+   +  A   +    R   ++ +S    + 
Sbjct: 565  ELLNDPA-VGFEAEGQDFARLRPADIAVLVRTGKEAAAVQRELRRRHVASVYLSDRQSVF 623

Query: 423  TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             +  +  L   L A+    D       +          E       +          +  
Sbjct: 624  ASAEAQDLLHWLRAVASPLDIRLARAALATRSVGLSIAELMRLADDDEAFDERSEQLRQL 683

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV-DHILQCITPLVTYKTNK 541
            + +   + ++     T         W   L  + K+           + +T  +      
Sbjct: 684  HVVWQQQGVLTMLRQTLHLLDLPARWLGTLPVDGKQEVDTAGGQDGERRLTNFMHLAELL 743

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
             +    L             +    +  R    +   E    L  + +     G      
Sbjct: 744  QAASAQLDGEQALVRW--LAEQTQGEPTRNDDQIVRLESDADLVKVVTVHASKGLEYPLV 801

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR---------------------LLN 640
             + +      +    T    +  +     L    S                      L  
Sbjct: 802  FMPFASGFRPVERRTTRMLNLSDADGQRSLHLHLSDAHIDAADKERHREDLRLLYVALTR 861

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
                +  GL       +       S +                     ++  G   ++  
Sbjct: 862  ARHAVWVGLAALKSGNSDRCTFARSAIGYVIHG-HEEVHQDALKTQIEKVIAGCPDVVLV 920

Query: 701  RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
             +     +     +  +    L     +    +R      ++  +               
Sbjct: 921  EAQPIEALARTPLQPREAAPALRDLHSYTATFERHWTIGSFSALVRDLPSTGAVAASIAV 980

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYA----RRILKLDFIPHFKKDPDRTDRGTLFHNII 816
               + +    S  E     +   +  A       +  +    + + P     G   H+ +
Sbjct: 981  VRDDERVTLASVDEAALAPHGIASWDAVALSAATVMAEVGQPWHRFPRGAMPGNFLHDQL 1040

Query: 817  TELI-----------------KKRINKNTPEINHLMKQIIDSHFEKENLPPHID------ 853
              L                  ++   +   +    +++ +         P   D      
Sbjct: 1041 EWLASEDFDLNRSPARSEQLQRRCERQGWGDRATEVREWLGEVLRTPIPPLGADLESVGT 1100

Query: 854  -----IIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906
                   W  +      +   L  +  +      I      +         L GFAD + 
Sbjct: 1101 VLPEMEFWLPVDGLSASAIDGLCRDHLLAGCARPILPERELRGM-------LMGFADVVF 1153

Query: 907  LLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936
                G   + DYK+    + +        Q
Sbjct: 1154 EYG-GRYWVLDYKSNHLGESDANYTPEALQ 1182


>gi|217979456|ref|YP_002363603.1| UvrD/REP helicase [Methylocella silvestris BL2]
 gi|217504832|gb|ACK52241.1| UvrD/REP helicase [Methylocella silvestris BL2]
          Length = 694

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 57/526 (10%), Positives = 126/526 (23%), Gaps = 61/526 (11%)

Query: 46  SVTIYVPTKRAIQEL--------RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY 97
            + +   ++RA  E+        R    +  G+ +  L    +   +       D     
Sbjct: 67  RILLMTFSRRAAAEMTRRVETIARKAMGDRAGQMTQALRWSGTFHAIGARLLR-DYADQI 125

Query: 98  NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID 157
            L+P  +   R    A L+ + R++L     +    +  +                    
Sbjct: 126 GLDPAFTIHDREDS-ADLMNLVRHELGFSKTESRFPTKGTCLS----------------- 167

Query: 158 IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217
            I +     E            W    A  LK     + +     N        +   +A
Sbjct: 168 -IYSRCVNAELAIEPVLGASFPWCSAWAIELKQLFAAYVDAKQRQNVLDYDDLLLYWAQA 226

Query: 218 EAEHLMK----GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
             E  +          +++     +    A ++  +     G  V+   D       +  
Sbjct: 227 VGEAALADDIGDRFDHVLVDEYQDTNRLQASILKALKPSGRGLTVV--GDDAQSIYSFRA 284

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
            T ++        +    P   +  L          +     V +    R          
Sbjct: 285 ATVRNILEFPQAFS----PPAKIITLDRNYRSTPAILAAANGVIDLASER---------- 330

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSAL 391
              +    T+      P          L+   +E ++A  I   +  + +     K+ A 
Sbjct: 331 --FTKNLWTERKAAAPP---------QLVGVRDEADQARYIVERVLENREGGLTLKQQAA 379

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +    + +  +++ELTR  I      G+      H   + +LL       D +A   ++ 
Sbjct: 380 LFRASHHSGSLEVELTRRNIPFVKFGGLKFLDAAHIKDILALLRFAENPRDRVAGFRVML 439

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
                     +                          +          +  +    W S 
Sbjct: 440 LMPGVGPASAQRALDFMAQASDPIGALADAPAPRRAGEEWRSFVEIVAQLGSGRAGWPSE 499

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
           +          L          L      +    G  S   +    
Sbjct: 500 IERARLWYEPHLDRMHEDAAARLADLIQLEQIASGYASRERFLTEL 545


>gi|255282638|ref|ZP_05347193.1| ATP-dependent nuclease subunit A [Bryantella formatexigens DSM 14469]
 gi|255266931|gb|EET60136.1| ATP-dependent nuclease subunit A [Bryantella formatexigens DSM 14469]
          Length = 1237

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 61/174 (35%), Gaps = 19/174 (10%)

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITEL-IKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
            +      K +     RGT++H ++  L      + +  +    M++ +++   +     H
Sbjct: 1038 IPEFLQEKSEVSGAARGTIYHKLMECLDFTLFADTSVQKDTAEMRRFLEAETGRLQRAGH 1097

Query: 852  IDIIWRHLF-HKISHSFLEHEEKIQ----SSIEKIFVNIPAKMAIESIGIH--------- 897
            +      L   K   +FL+H    +    +   ++F      +++ +  I          
Sbjct: 1098 LKAEEAELISEKKLLAFLKHPLAQRMAQAAVRGQLFREQQFVLSVPAGDIRREWQAGGPV 1157

Query: 898  -LTGFADRIDLLKSGFVDITDYKTG--DNPKKETAQKLIDPQLSLEAAALKAGS 948
             + G  D   + + G + + DYKT      +  +  +    QL     AL   +
Sbjct: 1158 LIQGIIDAYFI-EDGQIVLVDYKTDFVKFEEASSLYRKYAVQLDYYEIALTRLA 1210


>gi|184200508|ref|YP_001854715.1| putative ATP-dependent DNA helicase [Kocuria rhizophila DC2201]
 gi|183580738|dbj|BAG29209.1| ATP-dependent DNA helicase UvrD2 [Kocuria rhizophila DC2201]
          Length = 596

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 56/584 (9%), Positives = 145/584 (24%), Gaps = 61/584 (10%)

Query: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
              T RA  E+R     +           ++       +       +    PP       
Sbjct: 65  LTFTARAANEMRQRLRALGAPGV----QARTFHSAALRQLQYFWPQAVGGPPP------- 113

Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
                L+      + +  + +   +  +     A  I  AK        + T +      
Sbjct: 114 ----GLVNHKARLITEAGQAMRLTTDRATVRDVAAEIEWAKV------SMHTPDTYP--- 160

Query: 170 HALKNEKY-GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLM 223
            A         + +     ++   + + +   + +        +  +    E       +
Sbjct: 161 QAAGRRDMPAGYDVRT---MQRLYQSYEDLKADRHLIDFEDVLLITVGILEEDERIAAAV 217

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                  ++       P   RL+       +   V+   D       +   T +      
Sbjct: 218 HAQYRQFVVDEYQDVSPLQQRLLDAWLGSRDDLCVV--GDASQTIYSFTGATSRHLLEFP 275

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
           S      +P  S+ +L+       + V                   +   P  +   +T 
Sbjct: 276 SR-----YPGASVVELIRDYRSTPQVVNT------------ANRLLAARRPSLTSTPDTW 318

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARR 401
               ++ + +    + A  E  ++  EA  +A+ ++  +D+     + A++      ++ 
Sbjct: 319 ATPLRLVSQRPAGPEPAWNEYPDDEAEAAGVAVRIQDLIDDGVAPHEIAVLFRTNGQSQT 378

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            +  L    I   +                    AI ++      A   +  + +     
Sbjct: 379 FEAALADANIGFQLRGSERFFNRPEIR------QAIVQIRSAARTAGADRADVPQQVRDM 432

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                                  +  L SL          +           E ++  A 
Sbjct: 433 LGSLGYTERAPRSDSATRAKWESLRALVSLADTMARRAAADGETLSLAGFAQEIERRAAT 492

Query: 522 LLVDHILQC-ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
                +    +  L + K  +      + +S+             +DE R+L  +     
Sbjct: 493 QEAPVVDGVTLASLHSAKGLEWDAVFLVGLSEGLMPISFADTPDAMDEERRLLYVGITRA 552

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
            + L   +S     G         ++D +         + +  +
Sbjct: 553 REHLVFSWSLSRTPGGRPNRARSRFLDAVLPPAPRTPARRRGGR 596


>gi|66043948|ref|YP_233789.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            syringae B728a]
 gi|63254655|gb|AAY35751.1| Exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            syringae B728a]
          Length = 1230

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 98/962 (10%), Positives = 225/962 (23%), Gaps = 144/962 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
               +  W         DL        P   A A           + +   +   + L   
Sbjct: 271  FEKLAAWAADDTQEALDLGTGFTRLTPDGIAEAWKGDPPAHPAFEAMAQLKAALDGLPKP 330

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKG 228
                       AA ++ +  +    R  E+     +    A +          L++    
Sbjct: 331  DAAVL----QHAAQWVSVRFEEEKRRRAEMGFDDMLLRLDAALHGAGGERLATLIREQFP 386

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSN 285
              +I     + P   R+  ++           +    D       +      +       
Sbjct: 387  VALIDEFQDTDPVQYRIFDSIYRLEANDEQTGLFLIGDPKQAIYAFRGADIYTYLRARQA 446

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
            T    H   +  +    +      V        +  G  +   +       SD       
Sbjct: 447  TDGRWHTLDTNYRSSHAMVESVNHVFTRAEQREQGRGAFLFRDEHGNQVPFSDALAQGRK 506

Query: 346  ENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK---------- 387
            E    +     +  V  +++D         ++ A S A  +   L+  ++          
Sbjct: 507  ETLHVDGAPLTALTVWHLQSDQPVSGVVYRQQLAASCASEIVRLLNAGQQGSAGFVTPDS 566

Query: 388  --------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                      A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A  
Sbjct: 567  TLRGLRPADIAILVRDGKEAQAVRQQLTARGVRSVYLSDKDSVFAAQEAHDLLSWLKACA 626

Query: 439  KL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            +        A    +   L                  ++  RG +  +    +  ++   
Sbjct: 627  EPDSERTLRAALACITLDLPLAELERLNQDELAWERRVMQFRGYRAIWRSQGVLPMLRRL 686

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            +        +      ++  D E  +  + H+ + +         + +           +
Sbjct: 687  LHDFALPQTL------MTRNDGERVLTNLLHLSELLQQAAAELDGEQA---------LIR 731

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                 L         ++  L  +E+   + ++          +    I            
Sbjct: 732  HLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFIC---------SS 782

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD-LNL 674
            + V             G  +  L   + LI    +E +          L+R   +  L +
Sbjct: 783  KPVDGSRLPLQFHDADGKSQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGV 842

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
               ++     +     A G                   + WL+ L           + + 
Sbjct: 843  ADLKRGNANTSMLHRSALG----YLLGGGAALAESAELNIWLRDLAQGCDAIALQPVPEP 898

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND--PYAVYARRILK 792
                    R      K    KR        A        +      D  P +  A+++  
Sbjct: 899  TDERFSAPRNAAALVKLLVPKRRAAENWWIASYSALRIGDTVTAGADESPDSPQAQKLFD 958

Query: 793  LDFIPHFKKD------------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
             + +                  P   + GT  H ++     +         + L   +  
Sbjct: 959  DERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFANTAHAPDKLQDAVAR 1018

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-----------VNIPAKM 889
                +          W +         L    ++      +            V +    
Sbjct: 1019 RCNRRG------WAGWINTLSDWLQHLLNMPLRLSPDAAPVALGELDQPNQYRVEMEFWF 1072

Query: 890  AIESIGIH---------------------------LTGFADRIDLLKSGFVDITDYKTGD 922
            A  ++ +                              GF D     + G   + DYK+  
Sbjct: 1073 ASNNVNVAQMDALVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHE-GRYYVADYKSNW 1131

Query: 923  NPKKETAQKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                ++A               D Q  L   AL     +++      + +    Y+ L+ 
Sbjct: 1132 LGSDDSAYTPLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYDYDQHMGGALYLFLRG 1191

Query: 968  KF 969
              
Sbjct: 1192 SR 1193


>gi|229828348|ref|ZP_04454417.1| hypothetical protein GCWU000342_00406 [Shuttleworthia satelles DSM
            14600]
 gi|229792942|gb|EEP29056.1| hypothetical protein GCWU000342_00406 [Shuttleworthia satelles DSM
            14600]
          Length = 1315

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 24/166 (14%)

Query: 804  DRTDRGTLFHNIIT--ELIKKRINKNTPEINHLMK---QIIDSHFEKENLPPHIDIIWRH 858
                RGT  H ++   +  ++    +  E    M+   ++ +              + + 
Sbjct: 1114 PGALRGTAMHRVMECLDFAREDYADSLGEQLDQMRADGRLSEEELGLVLPDRIQSFLKQD 1173

Query: 859  LFHKISHSFLE---------------HEEKIQSSIEKIFVNIPAKMAIESIG---IHLTG 900
            +  +I  S +E                E       +    +  ++    ++G   I + G
Sbjct: 1174 MADRIHRSAVEGRLYREQPFVMGLRPKEIDRLMGRQPSAASKESETDAAAVGENMILVQG 1233

Query: 901  FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
              D +  ++ G + + DYKT     +         QL L A A+  
Sbjct: 1234 IID-LFFIEDGKIFLLDYKTDRVQDESELVGRYQAQLLLYAQAVLR 1278


>gi|72163277|ref|YP_290934.1| DNA and RNA helicase [Thermobifida fusca YX]
 gi|71917009|gb|AAZ56911.1| DNA and RNA helicase [Thermobifida fusca YX]
          Length = 1050

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/566 (9%), Positives = 125/566 (22%), Gaps = 69/566 (12%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            +       T+RA  ELR     + G+++  +  I +L  +           +        
Sbjct: 532  SQCLAITFTRRAADELRERLHALLGERAADM-TITTLHGLGALILREQYARA-------- 582

Query: 105  NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE- 163
             +     +A      R ++   I     E    L             +A     +     
Sbjct: 583  GLSPDFTIAD--DSLRQEIAAEIAGSAGEGRRLLARRETALHEDDAEIARFDARLREANL 640

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              + DL  L          L A         W                            
Sbjct: 641  VDFTDLIRLPVRLLSADEELVAH----YRSRWP--------------------------- 669

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                  I +        +   L+  +A       V+   D       +           +
Sbjct: 670  -----YISVDEYQDVDESQYALLRLLAGPEANLTVI--GDPDQAIYGFRGADVGFFLRFT 722

Query: 284  SNTTYSTHPQ-YSLAKLLDFLDIKREDVKRLGNVSNEMYGRS-MVISKSFLPPDTSDMRN 341
             +   +   Q     +    +           ++      R+     ++           
Sbjct: 723  EDYPSARTVQLTRNYRSNSTIVNAALQAIAPASLVPGRTLRAVGQFGEAPRIGVHVAADE 782

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
                      I +     +L   D+ R                +     ++      +  
Sbjct: 783  YAEASFVARAIDRLLGGTSLHSLDSGRVTEDGDDSL-------SFSDICVLYRTDAQSEA 835

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF-----MAIATLVKHPLAK 456
            +       GI     +   L +     IL  +     + +        +    +    A 
Sbjct: 836  IISAFNTAGIPFQKRSHDRLLSRPEMRIL--VAELPHQPDGPVVDRVRSAVETLCRRYAD 893

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                   +  A   +  +A R   +  + +   +L  +  A       V       ++  
Sbjct: 894  NERRVTDVRAAGELVAPLAERCGTDLSEFLSALALGAEVDALDPRADRVSLLTLHAAKGL 953

Query: 517  KELAVLLV---DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            +   V LV   D +L    P   ++                +  +   +        +  
Sbjct: 954  EYPVVFLVGCEDGLLPFFFPGEEHEDTAEERRLFFVGITRAQRRLYLSRARRRTRRGRTF 1013

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIK 599
            +         + +  +  ++  S ++
Sbjct: 1014 DAAPSPFLAAIDAKLTMAVDAESALR 1039


>gi|215428675|ref|ZP_03426594.1| putative ATP-dependent DNA helicase [Mycobacterium tuberculosis
           T92]
          Length = 307

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/318 (8%), Positives = 78/318 (24%), Gaps = 66/318 (20%)

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL------------SRVMQSDLNLKT 676
            +L    +    +D +++ GL +G+WP    +   L            ++       L  
Sbjct: 1   MVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASMRAPLLA 60

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--DFFDNLKKR 734
            E+ +   A            + + +    +   + S +   +        +        
Sbjct: 61  EERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVS 120

Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP--------------------------- 767
               L     +                                                 
Sbjct: 121 APRVLSAAAVVGRLRAVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVS 180

Query: 768 -----------RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
                       T + S ++ L + P    A R    +           +  G++ H + 
Sbjct: 181 TSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRE------LPSAVGSVLHALF 234

Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
            E       ++  ++   + + +  H          +         +  +F++   + +S
Sbjct: 235 AE-----PGRSESQLLAELDR-VWGHLPFGAQWYSAN--ELARHRAMIQAFVQWRAQSRS 286

Query: 877 SIEKIFVNIPAKMAIESI 894
            + ++ V +    A+E  
Sbjct: 287 ELTEVGVGVDIDGALEDG 304


>gi|190574929|ref|YP_001972774.1| putative helicase IV [Stenotrophomonas maltophilia K279a]
 gi|190012851|emb|CAQ46480.1| putative helicase IV [Stenotrophomonas maltophilia K279a]
          Length = 919

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 60/240 (25%), Gaps = 13/240 (5%)

Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL---ADIIDIIETEEKKWED---- 168
           +     +L +   +L P     LP   A  +  A  +      I   ++     +D    
Sbjct: 487 LQDLAERLGESGVELDPNPDRELPEQGAKPMPDADLIGLMRTFIAHAKSNCLTLDDMAER 546

Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
           L  +  +++        +      + W   L + +                +   +    
Sbjct: 547 LRQMPEDQFEERHRRFLEIASPVFQAWDNALADEHGIDFEDMLNMAAGLLEQGHYESPYE 606

Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            ++      +  A ARL   + + P G  +    D       +                 
Sbjct: 607 LVMADEFQDASRARARLCRALVSRP-GRYLFAVGDDWQSINRFAGADVSVMTGFREWM-- 663

Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
             H Q  + KL       +          +    +     +S  P     ++   +   +
Sbjct: 664 -GHGQ--VLKLEQTFRCPQALCDASSRFVSRNPAQIAKAVRSAAPAMGPVLQAFQMNRRE 720


>gi|284044825|ref|YP_003395165.1| exodeoxyribonuclease V, subunit gamma [Conexibacter woesei DSM
           14684]
 gi|283949046|gb|ADB51790.1| exodeoxyribonuclease V, gamma subunit [Conexibacter woesei DSM
           14684]
          Length = 1143

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 83/896 (9%), Positives = 204/896 (22%), Gaps = 83/896 (9%)

Query: 42  LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
              A+  + VPT+   + L        G                              N 
Sbjct: 27  DPFAAEVVAVPTRGVERWLAQRLSGRLGTSP-------------------GAGDGICANV 67

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
                +R++E A       +   D  +      PL   +  A+       L   +D    
Sbjct: 68  AFPTPRRVVEEAIAAASGLDAATDPWRPERALWPLLELVDAASDEAWLGRLTAHLDRAAG 127

Query: 162 EE----------KKWEDLHALKNEKYGMWWL----------LAADFLKIASKYWTERLVE 201
           +                 +AL        W                 +  ++ W      
Sbjct: 128 DRSRRLSAVRHVATLFARYALHRPAMLRAWAAGSDEDGAGGALDAEHRWQAELWRRLRER 187

Query: 202 LNASSPVGYQIA-LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
           +    P         R   +  +      I + G T       +L+  +A   +  + L 
Sbjct: 188 VGVPGPAELLDLGRARLVEDPGLSDLPERISLFGLTSLPARDLQLLRALAERRDVHLFLL 247

Query: 261 GLDCHIPTAIWNTI--TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
                    I +        T   + +     HP  +             +      V  
Sbjct: 248 MPSPAAWRGIADAAGRGPILTRGQALSAALPAHPLLASWGRDGRELQLLLEPLPTEAVHA 307

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
           +  G                  +    E++   +    + V +        +   +  A+
Sbjct: 308 DAIGAGDEPDTLLARVQADIRADRTPREDEPVQLGDGDASVQVHVCHGRARQVEVLRDAI 367

Query: 379 RMSLDEN----KKKSALITADRNLARR-----VKLELTRFGINIDISAGIPLSTTLHSSI 429
             +L ++     +   ++  D                   G  +   A            
Sbjct: 368 LHALADDPSLEPRDVIVMCPDIETFAPLVEATFGAGEADVGEALADDAVDLSGAHPAELR 427

Query: 430 LTSLLNAIFKLND----FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
           +     ++ + N        +  L    +      +            +         D 
Sbjct: 428 VRLADRSLRQTNPVLGVVTKLLELATARVTASELLDLVDREPVRRRFRLEEDELARVEDW 487

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
           +    +     A  +    + H          +  +  V    +    L       +   
Sbjct: 488 VAASGIRWGLDAAHRAPFRLQHVPQGTWAAGLDRLLTGVAMAERPGHTLAGVLPLDDVDS 547

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRK---------------------LPNLWFEEEGKTL 584
             + ++      +  L     +                           + W   E + L
Sbjct: 548 SAIDLAGRFAELLDRLAAALDELAAPKPISAWATAIAEAADTMTATTPRDAWQRAELQQL 607

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE--KSSTLFILGTLESRLLNFD 642
            +   +         A +++  D+   L      +P     ++  L +      R +   
Sbjct: 608 LADVVEEATNDGVASAVSLDVADVAALLGGRLAGRPTRTNFRTGHLTVCTLQPMRSVPHR 667

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
            + L GL++ V+P+ + ++     + +  +  +       Q   D  MA G   LI T S
Sbjct: 668 VICLLGLDDDVFPRRSPRDGDDVLLDEPWIGDRDGRSEDRQILLDALMAAG-DRLIVTYS 726

Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
            R        +  +    +L   D        G+        + +  +        P   
Sbjct: 727 GRSERTNAERAPAVPIGELLDVIDRTACAADGGRARDAV--LVRHPLQPFDAANFAPSTL 784

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL-FHNIITELIK 821
           +  +  ++    ++          +R       +     D    D+      + +   ++
Sbjct: 785 VPQRAWSFDGVTLEGARALGGERGSRPPFLPRPLQPQDADVIELDQLLAFVGHPVRAFLR 844

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI-SHSFLEHEEKIQS 876
           +R+              +    +          +       +     +  E    S
Sbjct: 845 QRLGVGVDVGAGERSDSLPIELDPLARWGLGARLLAARRAGVDVGVAVADERARGS 900


>gi|288942789|ref|YP_003445029.1| exodeoxyribonuclease V subunit beta [Allochromatium vinosum DSM 180]
 gi|288898161|gb|ADC63997.1| exodeoxyribonuclease V, beta subunit [Allochromatium vinosum DSM 180]
          Length = 1284

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 96/969 (9%), Positives = 215/969 (22%), Gaps = 138/969 (14%)

Query: 150  KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
            + LAD+ + + T     EDL                    I ++   + L+ L+ +    
Sbjct: 326  RALADLHETLTTLPDPTEDLLTHAVHWLKSHVEREKRQSAILTQ--NDLLIRLDQALQGE 383

Query: 210  YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH---PNGAIVLPGLDCHI 266
             +  L  A             ++     + P   R+ S++                D   
Sbjct: 384  VRERLAAAIRRQFPVA-----LVDEFQDTDPLQYRIFSSIYEIQANHAATGFFMIGDPKQ 438

Query: 267  PTAIWNTIT----------------------EKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
                +                            ST + ++      H + +         
Sbjct: 439  AIYAFRGADIHTYLIARAATQGRHYTLDVNYRSSTGLITAVNALFEHGERTATHGAFLFR 498

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
                    +         ++         P                  +  +       A
Sbjct: 499  EPDGQGNPVPFHPARPRDQAERTLTIDGRPCPPLQGWVIPPGPSGKLNKDAYRARTAEAA 558

Query: 365  DNEREEAISIAIALRMSLD--------ENKKKSALITADRNLARRVKLELTRFGIN-IDI 415
                 E + +  A R  L               A++  +RN A  ++ EL R  +  + +
Sbjct: 559  ARAIAELLRLGQAGRALLPVGQDGERPLEPSDLAVLVNNRNEADAIRTELRRLDVASVYL 618

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            S    +  T  +  L  LL AI    D   +   +   L   G  +              
Sbjct: 619  SERGNVFDTQIARDLAVLLRAIADPFDDRLMRQALATRLLGQGLTDLDRLNRDELHWETQ 678

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK--------ELAVLLVDHI 527
                ++       +  +                      E          EL     + +
Sbjct: 679  GERLRDLNGRWRRQGFLPMLYRLIGEFRIAARLLGTTDGERAMTDLLHLGELLQRASEEL 738

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                  +   +     +      +   +          +       +   E     L  +
Sbjct: 739  DGEQALVRFLEEAIADSDAATGETAEARQLRLESDARLVRVVTIHKSKGLEYPLVFLPFI 798

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL-FILGTLESRLLNFDTLIL 646
                            +    +   + G+           L   L  L   L        
Sbjct: 799  ADCRRTQSKDRPLKTHDAAHRLQVHLGGDDALVAQADRERLGEDLRKLYVGLTRARHANW 858

Query: 647  GGLNEGVWPKNTAKNPFLSRV----MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
             GL      +++A    L         S  +    E    +A          R    +  
Sbjct: 859  LGLGAISDLEHSALGYLLGLDGQTVEWSGDDQPETEGSGSEAQGTSNGDLSARLRRLSCV 918

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT------------- 749
               +      + +     V           +    ++     L                 
Sbjct: 919  TLIDPPAADPAPYQAEAEVELEGARPAPDWRPRAWWISSYSALSRGAHLADSEDLAAGVW 978

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                  RP             +  E       P      R L    +  F +       G
Sbjct: 979  AASETSRPVSPADAVETADDETVREELAETRTPETEMQTRSLGTGRLHDFPRG---GRYG 1035

Query: 810  TLFHNIIT-----------------------------------ELIKKRINKNTPEINHL 834
            T  H ++                                        +R++     ++  
Sbjct: 1036 TFLHGLLEWAANLRAPTRPTGPARPGFAAALEAAQARRRMLTQRCASRRLSDWVEPLDAW 1095

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV----NIPAKMA 890
            + +++D  +  + L P    + +     +     + E +      ++ +     +  +  
Sbjct: 1096 LIELLDRTWHLDALAPPDGAVPQLRLADLDPRRYQVELEFWIEASRVDLCALDRVIIRHT 1155

Query: 891  IESIGIH----------LTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETA 929
            ++               L GF D +   + G   + D+K+            +  +   A
Sbjct: 1156 LDGRERPELAGSYLNGMLKGFIDLVFEHQ-GRYYLLDWKSNWLGPDDSAYSPEAMRAAIA 1214

Query: 930  QKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADE 985
            ++  D Q  L   AL     +++      R +    Y+ L+            +    D 
Sbjct: 1215 ERRYDLQYVLYLLALHRQLKARLPDYDYDRHLGGAIYVFLRGGQAASQGLFMDR---PDR 1271

Query: 986  LSEKSLKNL 994
               ++L  L
Sbjct: 1272 ALIETLDRL 1280



 Score = 42.6 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 72/688 (10%), Positives = 168/688 (24%), Gaps = 39/688 (5%)

Query: 27   NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI--------- 77
             G  +     D   PL  + + + V  +     +R+E   +      +            
Sbjct: 571  AGRALLPVGQDGERPLEPSDLAVLVNNRNEADAIRTELRRLDVASVYLSERGNVFDTQIA 630

Query: 78   ------IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
                  ++++ D  +++     L +  L   ++++ RL            +L D+     
Sbjct: 631  RDLAVLLRAIADPFDDRLMRQALATRLLGQGLTDLDRLNRDELHWETQGERLRDLNGRWR 690

Query: 132  PESPLSLPISPANAIWLAKNLADIID--IIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
             +  L +         +A  L    D     T+     +L    +E+          FL+
Sbjct: 691  RQGFLPMLYRLIGEFRIAARLLGTTDGERAMTDLLHLGELLQRASEELDGE-QALVRFLE 749

Query: 190  IASKYWTERLVELNASSPVGY--QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
             A         E   +  +       L+R    H  KG + P++          T     
Sbjct: 750  EAIADSDAATGETAEARQLRLESDARLVRVVTIHKSKGLEYPLVFLPFIADCRRTQSKDR 809

Query: 248  TV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
             +   +  +   V  G D  +          +         T + H         ++L +
Sbjct: 810  PLKTHDAAHRLQVHLGGDDALVAQADRERLGEDLRKLYVGLTRARH--------ANWLGL 861

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
                      +   +      +  S      ++   ++       ++      ++ +   
Sbjct: 862  GAISDLEHSALGYLLGLDGQTVEWSGDDQPETEGSGSEAQGTSNGDLSARLRRLSCVTLI 921

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            +    A          ++    + A     R         L+R     D           
Sbjct: 922  DPPA-ADPAPYQAEAEVELEGARPAPDWRPRAWWISSYSALSRGAHLADSEDLAAGVWAA 980

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
              +          +  D   +   +     +    E               RG +    +
Sbjct: 981  SETSRPVSPADAVETADDETVREELAE--TRTPETEMQTRSLGTGRLHDFPRGGRYGTFL 1038

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL-----VDHILQCITPLVTYKTN 540
              L     +  A  +         +   E  +    +L        +   + PL  +   
Sbjct: 1039 HGLLEWAANLRAPTRPTGPARPGFAAALEAAQARRRMLTQRCASRRLSDWVEPLDAWLIE 1098

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW-FEEEGKTLSSLFSKIIETGSCIK 599
                  +L         V  L+   LD  R    L  + E  +       ++I   +   
Sbjct: 1099 LLDRTWHLDALAPPDGAVPQLRLADLDPRRYQVELEFWIEASRVDLCALDRVIIRHTLDG 1158

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                E        +    +    E     ++L    + L   D+            +   
Sbjct: 1159 RERPELAGSYLNGMLKGFIDLVFEHQGRYYLLDWKSNWLGPDDSAYSPEAMRAAIAERRY 1218

Query: 660  KNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
               ++  ++     LK          H 
Sbjct: 1219 DLQYVLYLLALHRQLKARLPDYDYDRHL 1246


>gi|86742424|ref|YP_482824.1| UvrD/REP helicase [Frankia sp. CcI3]
 gi|86569286|gb|ABD13095.1| UvrD/REP helicase [Frankia sp. CcI3]
          Length = 1124

 Score = 50.7 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/462 (8%), Positives = 102/462 (22%), Gaps = 52/462 (11%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
           P +   R ++ A+ +                         T+RA  EL      + G  +
Sbjct: 509 PGTGKTRTLVHAIAHRVAEHGVPAG--------ECLAVTFTRRAAGELAERLAGLLGDAA 560

Query: 73  TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
             + +  +   +        ++   +         ++ + A  + +    L         
Sbjct: 561 GRV-LATTFHGL-----GLTIIREQHAKLARGPQVQVADDAVRVELIAAALHGEGDARTR 614

Query: 133 ESPLSLPISPANAIWLAKNLAD--IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
               +          L + + D  ++  +   +    D   +  +      L        
Sbjct: 615 RRVAAGVAELKRHRALGQAIRDHDLVGALARYDAALRDRDMVDLDDLITLPLTLLRSSPD 674

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
            ++++  R                               + +     +     RL+  + 
Sbjct: 675 LAEHYQRR----------------------------WRHVWVDEYQDTDELQYRLLGLL- 705

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
             P  A +    D       +     +             +P      L       R  V
Sbjct: 706 -CPPTANLCVIGDPDQAIYSFRGADVRFFLRFE-----QDYPSARPVALTRGYRSTRTIV 759

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
           +   +V             +    +           ++          +           
Sbjct: 760 RTALDVIAPTSLVPDRTLTAVRGAEGDGPVLLRRYRSEAEEAIAVVDTIDAALGGTSF-H 818

Query: 371 AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
           A+   +   +    +    A++      A  +   L   G      + +PL+     + L
Sbjct: 819 ALDSGVDGSVDAGFSFADIAVLYRTARQAEPIMEALATRGFPFQRRSHLPLADAPAVADL 878

Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            +LL  +   +            L +               E
Sbjct: 879 LALLQDLTTTDPSGPGVPRPVSGLLRDAAARATDLAEARRSE 920


>gi|327480470|gb|AEA83780.1| chromosome segregation SMC protein, putative [Pseudomonas stutzeri
           DSM 4166]
          Length = 1162

 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 56/557 (10%), Positives = 146/557 (26%), Gaps = 39/557 (7%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE-- 201
           +   LA+    + D         ED   L+ ++      L  + L   ++   ERL +  
Sbjct: 411 SLERLAERQRRLDDERALLAADPEDRAMLELDEQLTASELDLEALAAVAEELNERLEQLR 470

Query: 202 -------------LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS--IPATARLM 246
                              +  +IA + A  +  M+  KG        G    P  A  +
Sbjct: 471 DELQQATRAQQQVQGELQRLNGRIASLEALQQAAMEPGKGVAEWLREQGLEQRPRLADGL 530

Query: 247 STVANHPNGAIVLPGLD------CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                       + G D                  + + N+ S+       P   L ++ 
Sbjct: 531 RVEPGWELAVETVLGADLQAVLLDDFAGVELAGFQQGALNLVSAPRGGDRGPGSLLERVE 590

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV- 359
             LD+           S E                + D         ++    +  S V 
Sbjct: 591 SALDLSPWLGHVRPVESLEHALAERPSLAEGESLVSRDGYWVGRHFLRVRRASEAESGVL 650

Query: 360 ------ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
                   + A+ +  EA   A+  R++    ++       +    ++ +       +  
Sbjct: 651 ARGQELQRLLAERDEREASLAAMEDRVAALSGEQSRLEGERELQRRQQQEEARKHSDLKA 710

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            +SAG      L             +          +     +     + +++     E 
Sbjct: 711 RLSAGQARLEQLALRRRRLDEELAEQQEQREIETEQLGEARLQLQEALETMAQDTEQRET 770

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
           +    +     +  ++          K++ H    +        E     ++ + Q    
Sbjct: 771 LLASRDGIRERLDRIRQ----DARQHKDHAHQLALRVGSLRAQHESTRQALERLEQQFE- 825

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
               +  +      L++ +           +     R++      +  +       + + 
Sbjct: 826 ----RAVERREQLTLNLEEGEAPLEELRMKLEELLERRMGVEDELKHARLALEDADRELR 881

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                +  A +   ++   ++ + +  +        +   L+    +   ++     +  
Sbjct: 882 DAEKRRTQAEQQAQLLRGQLEQQRLDWQGLSVRRNALQDQLQEDGYDLHGVLGTLPADAS 941

Query: 654 WPKNTAKNPFLSRVMQS 670
            P   A+   LS+ +Q 
Sbjct: 942 EPSWEAELERLSQRIQR 958


>gi|330816107|ref|YP_004359812.1| Exodeoxyribonuclease V, beta subunit [Burkholderia gladioli BSR3]
 gi|327368500|gb|AEA59856.1| Exodeoxyribonuclease V, beta subunit [Burkholderia gladioli BSR3]
          Length = 1248

 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 94/903 (10%), Positives = 203/903 (22%), Gaps = 83/903 (9%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPI 230
            +   W  L AD+L  A     E+       S       L  A   H      ++      
Sbjct: 348  QRARWLALIADWLAEAPARLAEKKRTRRVVSFDDLLANLYHALEAHPWLADTLRRRYPAA 407

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            +I     + P    +   +        +    D       +      +            
Sbjct: 408  LIDEFQDTDPLQFAIFDRIFAPAG--PLFLVGDPKQAIYSFRAADLHTYLAARERAGARY 465

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNV-----SNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                +       ++                  +    R+    ++     T     +   
Sbjct: 466  TLAVNQRSTPAIVEACNRVFGANPRAFVLDGLDYQPVRAGTRQRAPFVDGTDPRAGSGDF 525

Query: 346  ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---------KSALITADR 396
               +             +    +  A  IA  +R + +   +           A++    
Sbjct: 526  RIWMLPDGDQALGKRDAQWQAAQACAAEIARLMRGAREGAVRLGEAALTPADIAVLVQTH 585

Query: 397  NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
                 VK  L  +GI     A   +  TL +  L  +L AI    D   +   +      
Sbjct: 586  RQGSIVKRVLAAWGIGSVELAQASVFATLDAEQLERVLAAIDAPGDLRRLRAALATDWFG 645

Query: 457  FGFPEKYLSR-----------------------AKNALELVALRGNKNSYDIMDLKSLVL 493
                  +                              L               +L+    
Sbjct: 646  LDAAALWRLEQGEAAPGAAADDADAMSWVERFSRYRLLWRERGFAVMWRSFARELRIAER 705

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                                 + +  A   +   L+ +         +++     S  + 
Sbjct: 706  LIGGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRAVGGGEDAQLRLESDRNL 765

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW--IDIITR 611
             ++                P L      +          E      A  + +   +    
Sbjct: 766  VQIVTVHKSKGLEYAVVFCPFLNDGRLHEPREDALPDAREYHDEAGAAVLHYGCDEAAAE 825

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL--SRVMQ 669
            L   +  + +  + + L  +    +    +    +            +   +L       
Sbjct: 826  LAATQARREQAAERARLVYVALTRAVHRCYLVAGVYQSARSTREARRSVLNWLVGGAGHG 885

Query: 670  SDLNLKTAEKYIGQAAHDFEMAN------------GTRHLIYTRSLRENNIPTIASRWLQ 717
             D  L+T  +    AA    +A                 L              A+R+L+
Sbjct: 886  FDAWLETPPEAEELAASWRALATGPISIAPLPGVSARTPLAAGHDAERLGGARQAARFLR 945

Query: 718  RLLVLGGTDFFDNLKKRGQC-YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
                +           R Q        +              P P ++         +  
Sbjct: 946  DAWRIASFSSLTASIAREQEGIAAVPDEALRPDHDALAAAVDPVPRIDGGGERAMQPDPD 1005

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
             ++  P    A   L L  +       D +         + E   +   +    +  +M 
Sbjct: 1006 DIVGFPRGAAAGECLHL--LFELSDFGDASGWDEAARRALHERPVEAEPELAKRLPAMMT 1063

Query: 837  QIIDSHFEKENLPP-HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-KMAIESI 894
            +++      E +P   +  I                    +++  + V      +A+ES 
Sbjct: 1064 RMLAEVVATELVPGMRLAAIDPGRRLNEMEFLFPAAALDFAALRALLVEHGYPDVALESG 1123

Query: 895  GIH--LTGFADRIDLLKSGFVDITDYKT---GDNP--------KKETAQKLIDPQLSLEA 941
             +     GF D I     G   I D+K+   G  P            A      Q  L  
Sbjct: 1124 TLAGFFKGFIDMIVEH-DGRFLIVDWKSNHLGATPDAYGPAALDAAMADHAYHLQALLYT 1182

Query: 942  AALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
             AL      ++        +A   Y+ ++                A   S + ++ L  +
Sbjct: 1183 VALHRYLRVRLPGYDYDSHMAGYLYLFVRGVRPGWSSGGRPSGVHARRPSRELVEALDAL 1242

Query: 998  VTL 1000
            +  
Sbjct: 1243 MRK 1245


>gi|313106801|ref|ZP_07793015.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 39016]
 gi|310879517|gb|EFQ38111.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 39016]
          Length = 1245

 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 74/866 (8%), Positives = 183/866 (21%), Gaps = 108/866 (12%)

Query: 196  TERLVELNASSPVGYQIALMR----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +R  E+     +      ++         L++      +I     + P   R+   +  
Sbjct: 361  KQRRAEIGFDDLLSRLDRALQGPGGERLAQLIREQFPVALIDEFQDTDPVQYRIFERIYR 420

Query: 252  HPNG--------AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
                          +    D       +      +       T    +      +    +
Sbjct: 421  IAADPGEPQARETGLFMIGDPKQAIYAFRGADIHTYLRAREATRGRHYTLGKNFRSTAAM 480

Query: 304  DIKREDVKRLGNVSNEMYGRSMV--------ISKSFLPPDTSDMRNTDILENKIPNIQKC 355
                               R                       +         +      
Sbjct: 481  VAAANRCFAFAEEHPRGAFRFAREGLENPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLD 540

Query: 356  FSDVALIEADNEREEAISIAIALRMSL------------------DENKKKSALITADRN 397
                 L  A   +E A   A A+R  L                         A++   R 
Sbjct: 541  AEAGVLGSAAYRQEMAERSASAIRRWLSLADLGRAGFADEQGGWRALRPADIAILVRGRA 600

Query: 398  LARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH---P 453
             A  ++  L  R   ++ +S    +  +  ++ L   L A         +   +      
Sbjct: 601  EAEAIRSALAARRLASVYLSDRDSVFDSQEAADLLHWLRACADPGADALLRVALATRSLH 660

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L                  ++  R  + S+    +  ++   +A  +    +   +    
Sbjct: 661  LDWATLERLNQDELFWERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLL--RHADG 718

Query: 514  EEDKELAVLLVDHILQCITPL--VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            E      + L + + +    L          +       S+      +    + +    K
Sbjct: 719  ERSLTNLLHLAEWLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHK 778

Query: 572  LPNLWFEEEGKTLSSLFSKI-----IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
               L +          + ++               A   I++  R         +     
Sbjct: 779  SKGLEYPLVLLPFICSWRELDGNSGAPASFHEDGAAGRVIELARRKEQAARAYEQANDER 838

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
                +  L   L      +  G+   V   + +       +        T          
Sbjct: 839  LGEDMRLLYVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCL 898

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                      ++      E      A R++       G         R + ++     L 
Sbjct: 899  AALRGECREIVV------EPAPEADAERYVAGRGQGLGQARETRRSSREKWWVASYSGLQ 952

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                               +P +   +   +              ++       + P   
Sbjct: 953  LQASAGLDDDEALESDESQEPISAEEATFHEEGRSAEQPPVAHASEMR--DDLHRFPRGP 1010

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH-FEKENLPPHIDIIWRHLFHKISH 865
              GT  H ++    ++  +    +     + +                 +W     +   
Sbjct: 1011 APGTFLHGLLEWAGREGFDVARADAQRRRELVARRCDLRGWKDWAEPLDLW---LEQYLA 1067

Query: 866  SFLEHE--EKIQSSIEKIFVNIPA-----------------KMAIES----------IGI 896
              L     E   + +    V +                   +  +            +  
Sbjct: 1068 EPLRWPGGETSLAGLVAYQVEMEFWFATHQVQAEAIDALVRRHTLGGAARPTLAPTLLNG 1127

Query: 897  HLTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAAALK 945
               GF D +   + G   + DYK+            +       +   D Q  L   AL 
Sbjct: 1128 MFKGFVDLVFEHQ-GRFYVADYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALH 1186

Query: 946  AGSFSQID----CRKVANLFYIRLKQ 967
                +++      R +    Y+ L+ 
Sbjct: 1187 RQLKARLPDYDYDRHMGGAVYLFLRG 1212


>gi|34499531|ref|NP_903746.1| exodeoxyribonuclease V subunit beta [Chromobacterium violaceum ATCC
            12472]
 gi|34105381|gb|AAQ61736.1| exodeoxyribonuclease V, beta subunit [Chromobacterium violaceum ATCC
            12472]
          Length = 1196

 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 94/846 (11%), Positives = 194/846 (22%), Gaps = 74/846 (8%)

Query: 155  IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            + + +E     W+              L    +               +    +    A 
Sbjct: 309  LFERMEAWLAAWDVYMDQVANSLAGLKLELIAWANEELARRRGVERSRSFDDLLTDLGAA 368

Query: 215  MRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
            +   A        +  +    +I     + P   R+            V    D      
Sbjct: 369  LDHPATGPLLAAQVADSFSVALIDEFQDTDPTQYRIFRRCF-VEEARPVFLVGDPKQAIY 427

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             +      +      +                 LD  R   + L    N ++GR +    
Sbjct: 428  SFRGADIFAYLAARHDAERQ-----------YTLDTNRRSDEPLVATVNALFGRELPFLL 476

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
              +         +     ++ + +  F+   L   + E  +  +   A     DE  +  
Sbjct: 477  DGIAYQPVAASPSSGGRLEVDDDRAPFNAQWLPAGEKELSKEAAELAAAEACADEIARLL 536

Query: 390  ALITADRNL-----ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
             L   DR       +RR         +    S G  + + L +  + S+      +    
Sbjct: 537  TLAGEDRAAIVKGASRRRLAGGDIAVLVATHSQGDRVRSELRARGVASVALTQESVFASR 596

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
                ++    A      +   R   A EL  L   +   ++ D        +    ++  
Sbjct: 597  EAGEMLALLHAWAEPANEGRLRRALATELAGLDAARIQAELEDETRWERQLLKNADDHQR 656

Query: 505  VPHW---QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                    +      +E A   +  +      L                       +   
Sbjct: 657  WREHGFMAAWRHYFARERAAERLLPLPDGERRLTNLGHLAELIQQESEGRQGMAPLLAWF 716

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                 D  R    +   E    L  + +     G         ++        G      
Sbjct: 717  AARVADPPRGEDAVLRLESDAALVKIVTVHTSKGLQYPVVFCPFLWNGALERRGAGFWSY 776

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
             +          L       D +     +E +  K       L+R            + +
Sbjct: 777  HDGDE-----PWLAPEAAADDGIRQAARSEMLAEKLRLLYVALTRAQYRQYISWGWVREL 831

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
              AA                +L    +         R  +         L+  G+  L  
Sbjct: 832  KTAA--LSWLLHAPGARDLAALEALELDGGTVAAQLRAFLDQRGGAARWLEAEGRQALAG 889

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
             R          ++R    P   A   + +      L   P    A      +      +
Sbjct: 890  GRDPGRAYAALPFERRLYAPWKIASFTSLTHDAGSHLAEAPDYDRAAAPAPAEPAADPVR 949

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLM--KQIIDSHFEKENLPPHIDIIWRHL 859
            D     RG      + E+ +     +  +       + +    F +E L    D+I   L
Sbjct: 950  DRFSFPRGAKAGVCLHEIFENIGFGDAEDDIRAAVQRALARHGFGEEWLDAGCDLILGAL 1009

Query: 860  FHKISHSFLEHEEKIQSSIEKIFV-----------------------NIPAKMAIESIGI 896
              +I+      +      + ++                           P + A   +  
Sbjct: 1010 NAEIAPGARLRDVADHKRLIELEFTLPVKKLDVAALIAALQKPAHGLAEPFRRAAAGLDF 1069

Query: 897  H-----LTGFADRIDLLKSGFVDITDYKTGDNPKKET-----------AQKLIDPQLSLE 940
                  L GF D +     G V + DYK+                   A++    Q  + 
Sbjct: 1070 ASVQGFLKGFVDLVCE-AGGRVYLIDYKSNHLGDACDDYRDDSLVHAVAREHYYLQYLIY 1128

Query: 941  AAALKA 946
              AL+ 
Sbjct: 1129 LVALRR 1134


>gi|325916739|ref|ZP_08178995.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Xanthomonas
            vesicatoria ATCC 35937]
 gi|325537048|gb|EGD08788.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Xanthomonas
            vesicatoria ATCC 35937]
          Length = 1245

 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 84/862 (9%), Positives = 171/862 (19%), Gaps = 139/862 (16%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII---------- 231
                  L         RL  L     V     L+   A  L       ++          
Sbjct: 349  RRRIRLLHALRDDAIARLALLKRQRRVQTYDDLVDGVAHALQGPQADALVQRLRAQYAIA 408

Query: 232  -IAGSTGSIPATARLMSTVANHPNGAI-------VLPGLDCHIPTAIWNT---------- 273
             +     +      + S V      A        +    D       +            
Sbjct: 409  LVDEFQDTDDRQWGIFSNVFGEGPLARAAGLEPALFLIGDPKQAIYGFRGGDVRTYLAAA 468

Query: 274  ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
            IT +     S N         ++  L          +           G     +     
Sbjct: 469  ITAELAPPLSHNFRSRPGVLAAIDALYAQAGYTDAFLTDGIAFHPVQPGTKRNDADLQRD 528

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK----- 388
              T+            P  +          A   RE A +  +A         +      
Sbjct: 529  GATAPALTLWRAPEPPPPSKGKPKPKPW-SAGRARELATAACVAAIRGWLAGGRDGTATI 587

Query: 389  ---------SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                      A++      A R++  L   GI    +    L  T  +  L +LL A+  
Sbjct: 588  NGNPVQAGDIAVLVRSHGEATRIQQALGAVGIPAVAAGKQSLFATDEALELLALLQALLD 647

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
              D   +   +   L            A  ALE    R  +     +D +         +
Sbjct: 648  PGDDSRLRAALATVLIGEDAT------AIAALEHDGERHRRWQQHALDWRERWQ-----R 696

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                 +         +     V     +   +      +       G   + DW    + 
Sbjct: 697  GGPLALIGELGATHGQRLLALVDGERRLTNYLQLAELLQEADVRALGPHGLVDWLARRIA 756

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                               +  +               +  +  + ++     +    + 
Sbjct: 757  NAD----------------DNDEAQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIG 800

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
               + +    ++   E                        +           + L  AE 
Sbjct: 801  RSDKGAGRHCVVHAPELGRQLHWKTEKDDPTWSAAEAAWKQEQRAEDARLLYVGLTRAEH 860

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
             +  A+  F     T      R+L   +               G      +         
Sbjct: 861  ALWIASGSFHQHERTALAGMLRALDALHG------------AAGEGTVVVDTSTPPTNLP 908

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA-------------VY 786
                 L+         +    P       T   +      +DP A               
Sbjct: 909  RLPPPLEAQVPPARTPQRHIAPEWWVYSFTQLANADAGAASDPMASATVVGSGGSDEPAG 968

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK------------------------ 822
            +  I     +  F         G + H++                               
Sbjct: 969  SEAIAVATEVDAFDPRFAGNRFGVVMHDVFERCDFAAWHAWQPGQPAPDGQAAPIVEALQ 1028

Query: 823  ---RINKNTPEINHLMKQIIDSHF--------EKENLPPHIDIIWRHLFHKISHSFLEHE 871
                   +  +   ++  +I                +P             +  + +E  
Sbjct: 1029 RGGYAQDDLDDGLRMLTALIGHTLTVVLPEGTPLAAVPEPQRRNELEFHFAMRPTRVEAL 1088

Query: 872  EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
              +      +             G+ +TG  D +     G   + DYK+   P  +    
Sbjct: 1089 LALLHRFGVVSDRQAFGARQRLEGL-MTGLID-LTYTVDGRWYVLDYKSNRLPSYDADAL 1146

Query: 932  L-------IDPQLSLEAAALKA 946
                     + Q  +   AL  
Sbjct: 1147 AHAMAHSEYELQALIYTVALHR 1168


>gi|296137089|ref|YP_003644331.1| exodeoxyribonuclease V, beta subunit [Thiomonas intermedia K12]
 gi|295797211|gb|ADG32001.1| exodeoxyribonuclease V, beta subunit [Thiomonas intermedia K12]
          Length = 1202

 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 93/866 (10%), Positives = 190/866 (21%), Gaps = 136/866 (15%)

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY-----WTERLVELNASSPV 208
             + + +E       DL  L  E            L++         + ++L  L+A+   
Sbjct: 327  AVFNEVEMLRAALADLADLVPELQTYAAAQVDARLRVLKAASGQFSFHDQLERLDAALAG 386

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI----VLPGLDC 264
                 L     E          +I     +      +   + +          VL   D 
Sbjct: 387  PQGERLRARILEQYPVA-----LIDEFQDTSALQFSVFDRLYSITTAQTTHSAVLLIGDP 441

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                  +            S        Q   + L        E V    +V+     R 
Sbjct: 442  KQSIYAFRGADIA------SYLRARQATQGRHSALQTNYRSTAEVV---HSVNQLFERRE 492

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
                         +  + D     I    +  ++  +           ++  AL    D 
Sbjct: 493  QSAGAGAFLYRDDEAPDADNPVPFIAVGARGRAEQLICSEGPVHALTCAVHQALESKRDA 552

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
             ++ +A      + A R+   L    +    + G                   F      
Sbjct: 553  RERFAA------HSAARIVSLLNDTQVGFRQADGG------------------FARLRQS 588

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
             IA LV+              R   ++ L        S +  DL   +      +     
Sbjct: 589  DIAVLVRDGDEARAMRRALQRRGVASVYLSDRDSVFASPEAADLLRWLRAVAEPRDGRLA 648

Query: 505  VPHWQSRLSEEDKELAVLLV---DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
               + +            L    D     +  L   +           +           
Sbjct: 649  RAAFAAPTLGATIAELAALATDDDVFDNRLALLAELQAIWLRQGVLPMLRQTLHRLDLPA 708

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            + +  ++  +            L+ L           +A      + +      E V   
Sbjct: 709  RWLSEEDGERRLT-----NVLHLAELLQTASGALDGEQALIRWLQEQMAGQSTEEQVVRL 763

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
              ++  + ++   +S+ L +  + L                F +   ++       E+  
Sbjct: 764  ESEADLVRVVTIHKSKGLEYPLVFLP---------------FATAFKEAKDGADDRERLR 808

Query: 682  GQAAHDFEMANGTRHLI----------------YTRSLRENNIPTIASRWLQRLLVLGGT 725
                  +      RH +                  RS     +          +  L   
Sbjct: 809  EDLRLLYVALTRARHALWVGIAALKVGKGSVCMLHRSAIGYLLGGDTPCEGAAIPGLLRE 868

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND---- 781
             F D+   +                 P     +P        R +S      L+ D    
Sbjct: 869  TFGDSPAVQIVDAAQEAELQRLQAAHPAQALIEPPNYHAQFERNWSIGSFSALVRDLTPR 928

Query: 782  -----PYAVYARRILKLDFIPHFKKDPD-------------RTDRGTLFHNIITELIKKR 823
                       +  L        +  P                  G   H  +  L +  
Sbjct: 929  STQQPALQAALQDELWATEPSMEQPSPATLQPSAARHRFPRGALVGKFVHEQLAWLGENG 988

Query: 824  -----------------INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
                                     +  + + +         P    +            
Sbjct: 989  FALSAQQTQDNLLQRCARQGWDAPRSADLLEWLSEVLATPLPPLGAALPEIDTLLAEMEF 1048

Query: 867  FLEHEEKIQSSIEKI--FVNIPAKMAIESIGIHLT----GFADRIDLLKSGFVDITDYKT 920
            +L  +    + I+ +     +P +   E     L     GFAD +     G   + DYK+
Sbjct: 1049 WLPVDRARAAEIDALCQQHILPGRARPELTERTLHGMVMGFADLVFHHA-GRYWVLDYKS 1107

Query: 921  GDNPKKETAQKLIDPQLSLEAAALKA 946
                  +        Q  LEAA L+ 
Sbjct: 1108 NVLGTDDADYT----QQVLEAAVLEH 1129


>gi|21223557|ref|NP_629336.1| ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
 gi|9714476|emb|CAC01318.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
          Length = 785

 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/430 (10%), Positives = 98/430 (22%), Gaps = 61/430 (14%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           +   +    R   L P   +SV     T RA  E+R    ++           ++     
Sbjct: 103 ITHRIAYGVRAGILQP---SSVLAVTFTNRAAGEMRGRLRQLGASGV----QARTFHSAA 155

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
             +              +        L RL+      + D                    
Sbjct: 156 LRQLQYFW------PKAIGG-----SLPRLVDRKIQLVADAAAACRIRLDRGELRDVTAE 204

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
           I  +K    +         K          +                  + +     +  
Sbjct: 205 IEWSKVTQTVPADYAPAAAKAGREAPRDPAEIAQ-----------LYAAYEDLKRARSVI 253

Query: 206 SPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                 +  +    +       ++      ++       P   RL+       +   V+ 
Sbjct: 254 DFEDVLLLTVAVLQDRHDVAEQVRAQYQHFVVDEYQDVSPLQQRLLELWLGDRDDLCVV- 312

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D       +   T               HP  ++ KL+       + V     +  + 
Sbjct: 313 -GDASQTIYSFTGATPDHLLDFRGR-----HPGATVVKLVRDYRSTPQVVHLANGLLAQA 366

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
            GR+                       ++ + +    +    E  +E  EA   A  +R 
Sbjct: 367 RGRAA------------------DHRLELVSQRPAGPEPGYAEYSDEPAEAEGAARRIRE 408

Query: 381 SLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
            +D      + A++    + +   +  L   G+   +                S L A  
Sbjct: 409 LIDSGVPAAEIAVLFRTNSQSETYEQALADAGVPYQLRGAERFFDRPEVRKAGSALRAAA 468

Query: 439 KLNDFMAIAT 448
           +     ++  
Sbjct: 469 RFGGNDSLLD 478


>gi|254239046|ref|ZP_04932369.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa C3719]
 gi|126170977|gb|EAZ56488.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa C3719]
          Length = 1245

 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 76/866 (8%), Positives = 185/866 (21%), Gaps = 108/866 (12%)

Query: 196  TERLVELNASSPVGYQIALMR----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +R  E+     +      ++         L++      +I     + P   R+   +  
Sbjct: 361  KQRRAEIGFDDLLSRLDRALQGPGGERLAQLIREQFPVALIDEFQDTDPVQYRIFERIYR 420

Query: 252  HPNG--------AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
                          +    D       +      +       T    +      +    +
Sbjct: 421  IAADPDEPQARETGLFMIGDPKQAIYAFRGADIHTYLRAREATRGRHYTLGKNFRSTAAM 480

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF------- 356
                               R          P  +           I   +          
Sbjct: 481  VAAANRCFAFAEEHPRGAFRFAREGLENPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLD 540

Query: 357  -SDVALIEADNEREEAISIAIALRMSL------------------DENKKKSALITADRN 397
                 L  A   +E A   A A+R  L                         A++   R 
Sbjct: 541  VEAGVLGSAAYRQEMAERSASAIRRWLSLADLGRAGFADEQGGWRALRPADIAILVRGRA 600

Query: 398  LARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH---P 453
             A  ++  L  R   ++ +S    +  +  ++ L   L A         +   +      
Sbjct: 601  EAEAIRSALAARRLASVYLSDRDSVFDSQEAADLLHWLRACADPGADALLRVALATRSLH 660

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L                  ++  R  + S+    +  ++   +A  +    +   +    
Sbjct: 661  LDWATLERLNQDELFWERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLL--RHADG 718

Query: 514  EEDKELAVLLVDHILQCITPL--VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            E      + L + + +    L          +       S+      +    + +    K
Sbjct: 719  ERSLTNLLHLAEWLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHK 778

Query: 572  LPNLWFEEEGKTLSSLFSKI-----IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
               L +          + ++               A   I++  R         +     
Sbjct: 779  SKGLEYPLVLLPFICSWRELDGNSGAPASFHEDGAAGRVIELARRKEQAARAYEQANDER 838

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
                +  L   L      +  G+   V   + +       +        T          
Sbjct: 839  LGEDMRLLYVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCL 898

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                      ++      E      A R++       G         R + ++     L 
Sbjct: 899  AALRGECREIVV------EPAPEADAERYVAGRGQGLGQARETRRSSREKWWVASYSGLQ 952

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                               +P +   +   +              ++       + P   
Sbjct: 953  LQASAGLDDDEVLESDESQEPISAEEATFHEEGRSAEQPPVAHTSEMR--DDLHRFPRGP 1010

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH-FEKENLPPHIDIIWRHLFHKISH 865
              GT  H ++    ++  +    +     + +                 +W     +   
Sbjct: 1011 APGTFLHGLLEWAGREGFDVARADAQRRRELVARRCDLRGWKDWAEPLDLW---LEQYLA 1067

Query: 866  SFLEHE--EKIQSSIEKIFVNIPA-----------------KMAIES----------IGI 896
              L     E   + +    V +                   +  +            +  
Sbjct: 1068 EPLRWPGGETSLAGLVAYQVEMEFWFATHQVQAEAIDALVRRHTLGGAARPALAPTLLNG 1127

Query: 897  HLTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAAALK 945
               GF D +   + G   + DYK+            +       +   D Q  L   AL 
Sbjct: 1128 MFKGFVDLVFEHQ-GRFYVADYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALH 1186

Query: 946  AGSFSQID----CRKVANLFYIRLKQ 967
                +++      R +    Y+ L+ 
Sbjct: 1187 RQLKARLPDYDYDRHMGGAVYLFLRG 1212


>gi|300857964|ref|YP_003782947.1| hypothetical protein cpfrc_00546 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685418|gb|ADK28340.1| hypothetical protein cpfrc_00546 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205693|gb|ADL10035.1| Putative DNA helicase II [Corynebacterium pseudotuberculosis C231]
 gi|302330245|gb|ADL20439.1| Putative DNA helicase II [Corynebacterium pseudotuberculosis 1002]
 gi|308275928|gb|ADO25827.1| Putative DNA helicase II [Corynebacterium pseudotuberculosis I19]
          Length = 683

 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 70/660 (10%), Positives = 154/660 (23%), Gaps = 75/660 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV-EEKFTADLLLSYNLNPPVS 104
            V     T+RA  E+R     +           ++       +       ++ NL     
Sbjct: 53  RVLAVTFTRRAAGEMRHRLGVMGVGGV----QAQTFHSAAMRQLSYFWPQVAGNLP---- 104

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    +L+      +    + +  E+           I  AK              
Sbjct: 105 --------WKLLDNKFPLVGKAARSVGIETTTENVRDLLGEIEWAKATL----------I 146

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA------- 217
             +       ++       AAD +    + + +              + L  A       
Sbjct: 147 TPDRYVEHVKDRKIP---AAADKIAQVYRRYEQAKTTSEGMLLDFDDLLLHTAGAIENST 203

Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +      ++       P   R++       +   V+   D +     +   T  
Sbjct: 204 AIAEEFREQYRTFVVDEYQDVTPLQQRVLDAWLGERDDITVV--GDANQTIYSFTGATPN 261

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                S       +P  ++ KL                           ++         
Sbjct: 262 YLLGFSRK-----YPHATVVKLQRDYRSTP------------------QVTDLANTVIGK 298

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITAD 395
                     ++  ++    D      D+E  EA ++A  ++  LD+     + A++   
Sbjct: 299 ARGRVAGTRLQLEGMRPPGPDPEFCTFDDEPAEARAVASRIKELLDKGVAASEIAVLYRI 358

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +   +  L   GI   +  G             S L  + +     +I       L 
Sbjct: 359 NAQSAVFEQALADAGIVYQVRGGGEFFQRAEIRQAMSQLVRVAQRTGTESIRGSALETLV 418

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
           +              L      G +       L +L    +   +    +          
Sbjct: 419 RSSLAPL-------GLTPEEPEGTQARERWQSLDALAELTVELTQATPDLDIQGLLEQLN 471

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
            +  A          +  L   K  +      + + D   L +T           +   L
Sbjct: 472 QRASAKHPPTMQGVTLASLHAAKGLEWDAVFLVGLVD-GTLPITHALKGGEPHIEEERRL 530

Query: 576 WFE---EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
           ++       + L   ++K  + G         + D I        V P+ ++S    + G
Sbjct: 531 FYVGVTRAREHLVCSWAKARQEGGRATRKRSRFFDGIVEEPIHAAVPPRTKRSRRCRVCG 590

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
           +  S               GV  +           M  +  +     +     H    A 
Sbjct: 591 SPLSTSAENVMGRCVDCPSGVGEEVFETLKAWRLDMAKEGGVPAYIVFTDATLHAIAEAC 650


>gi|330967151|gb|EGH67411.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            actinidiae str. M302091]
          Length = 1230

 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 92/948 (9%), Positives = 221/948 (23%), Gaps = 116/948 (12%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A             +   +   + L   
Sbjct: 271  FEKLAAWAADQTQEALDLGTGFTRLTPDGVAEAWKSDPPSHPAFAAMAQLKAALDGLPKP 330

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++   W+ +A F +        R  E+     +      +          L++  
Sbjct: 331  DAAVLQHAAQWV-SARFEEE-----KRRRAEMGFDDMLLRLDGALHGAGGERLATLIREQ 384

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  ++    +      +    D       +      +     
Sbjct: 385  FPVALIDEFQDTDPVQYRIFDSIYRLEDNDEQTGLFLIGDPKQAIYAFRGADIYTYLRAR 444

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T    H   +  +    +      V        E  G  +   +       +D     
Sbjct: 445  QATDGRWHTLDTNYRSSHAMVESVNHVFTRAEQRPEGRGAFLFRDEKGNQVPFADALAQG 504

Query: 344  ILENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK-------- 387
              E    +     +  V  +E++         ++ A S A  +   L+  ++        
Sbjct: 505  RKETLEVDGTALTALTVWHLESEQPVSGVVYRQQLASSCASEIVRLLNAGQQSRAGFTAP 564

Query: 388  ----------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                        A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A
Sbjct: 565  GKALHGLRPADIAILVRDGKEAQAVRSQLTARGVRSVYLSDKDSVFAAQEAHDLLSWLKA 624

Query: 437  IFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              +        A    +   L                  ++  RG +  +    +  ++ 
Sbjct: 625  CAEPDSERTLRAALACITLDLPLAELERLNQDELAWEQRVMQFRGYRAVWRSQGVLPMLR 684

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +        +        E      + L + + Q    L   +        +L++S  
Sbjct: 685  RLLHDFALPQTLM--TRTDGERVLTNLLHLSELLQQAAAELDGEQALIRHLGDHLALSGQ 742

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-- 611
                    Q + L+   +L  +    + K L      +    S    +            
Sbjct: 743  AGE----EQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDAD 798

Query: 612  ------LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                  L   E +  + +       L  L   L   +     G+ +       +     S
Sbjct: 799  GRAQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNANSSMLHRS 858

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY---------TRSLRENNIPTIASRWL 716
             +           + +       ++A G   +           + S   N    +     
Sbjct: 859  ALGYLLGGGTALPESVDLKVWLRDLAEGCNAIALQPVPEPTDDSFSAPRNEASLVKLLVP 918

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
            +R           +  + G        +   + +       +   P   +    S  +I 
Sbjct: 919  KRRAAENWWIASYSALRIGDTVTAGADESPDSPQAQKLFDDERLDPEAPRDILVSGGDIH 978

Query: 777  QLINDPYAVYARRIL---------KLDFIPHFKKDPDRTDR---------GTLFHNIITE 818
            +    P        L                 + +     R              + + +
Sbjct: 979  RFPRGPNPGTFLHGLLEWAGNEGFANTARDPIELESAVARRCNRRGWKGWINTLRDWLQQ 1038

Query: 819  LIKKRINKNTPEINHLMKQIID--SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
            ++   +  +       +  +     +  +         +       +   F         
Sbjct: 1039 MLNMPLRLSPDSTPVALGDLDQPNQYRVEMEFWFASTHVNVAQMDALVRRFTHDNAPR-- 1096

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL---- 932
                        +++        GF D     + G   + DYK+      + A       
Sbjct: 1097 ----AATE---TVSLNG---MFKGFIDLTFEHE-GRYYVADYKSNWLGSDDDAYTDLAME 1145

Query: 933  -------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKF 969
                    D Q  L   AL     +++      + +    Y+ L+   
Sbjct: 1146 TAILDNRYDLQYVLYLLALHRQLKTRMADYDYDQHMGGALYLFLRGSR 1193


>gi|226355516|ref|YP_002785256.1| ATP-dependent DNA helicase [Deinococcus deserti VCD115]
 gi|226317506|gb|ACO45502.1| putative ATP-dependent DNA helicase [Deinococcus deserti VCD115]
          Length = 849

 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 77/758 (10%), Positives = 169/758 (22%), Gaps = 88/758 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T+ A + LR +  E             +L  +          +         +
Sbjct: 49  RILTTTFTREAGRSLREKLAEYPECAGV---ETLTLHALATRILDRARTMGLTDLIIGED 105

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                  +        +L +  ++L               + + K   ++      ++  
Sbjct: 106 HFSQRLFSEARTQLLAELSEDERELASRLRQMTFKDFDTYLGIQK--GNLRLPYLPQDLP 163

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AE 220
            +    ++  + G       D      +   E              +A           +
Sbjct: 164 PQAAALVQPPEGGP------DPYARVYERHDELRRREGKLDFDDMIVAAWMLLSRFSALQ 217

Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
             ++     I +        A + +M  VA        +   D       W     +   
Sbjct: 218 QDIRAKWDYISVDEFQDVNLAQSEMMDLVAGGCRS--YMAIGDDDQTIYQWRGAHPRFIL 275

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
             +       +   +  +    L +     + +G        R                 
Sbjct: 276 GFAKRYGAQEYTLPANFRC--PLGVIALADRVIGENRIRAPKRLRATRNGCGVHIHPPRT 333

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLAR 400
                       +    D  +I       ++  I   L       +   A     R    
Sbjct: 334 GEAAHVAMQALKEGRNPDDIVILLRT-YAQSAEIEQVLLEERTPYRLIGAAPFYRRPEVT 392

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            +   +     ++D  AG PLST                                     
Sbjct: 393 TLLAYIELALADLDTLAGRPLSTER----------------------------------- 417

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                    A              + D++ +  +   + +         +          
Sbjct: 418 ----RERIQAHWKSVAHRPSRYLRLTDVERIAREAWRSGRTLATTLEAFAESQP------ 467

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
               DH+ + +  L T+        G     D     V  +           P   F +E
Sbjct: 468 ----DHVAKPVALLATWLGFLTEDMGTTPGRDVLLDFVGAIGY-REYLVSTAPTTEFGQE 522

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
              +    +++ +T S  +              +    K   ++   L I+    ++ L 
Sbjct: 523 RAGMVDALAEMAQTRSLGELVTHLAQLHEQVRYEETLRKRGQDEEPRLTIMTAFRAKGLE 582

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY- 699
           +  +I+      ++      +P      +                     A    HLI  
Sbjct: 583 WPVVIIPDCTSAIYTGKPHADPAAGEEERRVF------------YVALTRAQQELHLIVG 630

Query: 700 ----TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
               T    E+       R   RL  L                 +   + ++      + 
Sbjct: 631 EDDNTTRFLEDVNYDRVVRQHDRLAGLLTRQPQAWSAGDTIEAAEILGQFEHEGFVQRWL 690

Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
            P+   PL A     +  +      DP A   RR+L L
Sbjct: 691 TPEVRRPLLAGFHNLANHQALATHTDPVAAEVRRLLDL 728


>gi|289769231|ref|ZP_06528609.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
 gi|289699430|gb|EFD66859.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 780

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/430 (10%), Positives = 98/430 (22%), Gaps = 61/430 (14%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           +   +    R   L P   +SV     T RA  E+R    ++           ++     
Sbjct: 98  ITHRIAYGVRAGILQP---SSVLAVTFTNRAAGEMRGRLRQLGASGV----QARTFHSAA 150

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
             +              +        L RL+      + D                    
Sbjct: 151 LRQLQYFW------PKAIGG-----SLPRLVDRKIQLVADAAAACRIRLDRGELRDVTAE 199

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
           I  +K    +         K          +                  + +     +  
Sbjct: 200 IEWSKVTQTVPADYAPAAAKAGREAPRDPAEIAQ-----------LYAAYEDLKRARSVI 248

Query: 206 SPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                 +  +    +       ++      ++       P   RL+       +   V+ 
Sbjct: 249 DFEDVLLLTVAVLQDRHDVAEQVRAQYQHFVVDEYQDVSPLQQRLLELWLGDRDDLCVV- 307

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D       +   T               HP  ++ KL+       + V     +  + 
Sbjct: 308 -GDASQTIYSFTGATPDHLLDFRGR-----HPGATVVKLVRDYRSTPQVVHLANGLLAQA 361

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
            GR+                       ++ + +    +    E  +E  EA   A  +R 
Sbjct: 362 RGRAA------------------DHRLELVSQRPAGPEPGYAEYSDEPAEAEGAARRIRE 403

Query: 381 SLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
            +D      + A++    + +   +  L   G+   +                S L A  
Sbjct: 404 LIDSGVPAAEIAVLFRTNSQSETYEQALADAGVPYQLRGAERFFDRPEVRKAGSALRAAA 463

Query: 439 KLNDFMAIAT 448
           +     ++  
Sbjct: 464 RFGGNDSLLD 473


>gi|12055072|emb|CAC20921.1| PimS2 protein [Streptomyces natalensis]
          Length = 9507

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 82/756 (10%), Positives = 172/756 (22%), Gaps = 28/756 (3%)

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
                   +    S          A+  A  L          +        L  +      
Sbjct: 2544 LTGRPATEAELRSADYWVAHARGAVRFADTLR------AAHDCGAGTFLELGPDSVLS-- 2595

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI-P 240
              A D L   ++     L+            AL R           G +   G+     P
Sbjct: 2596 AAAQDALGDDAEAHIVPLLRHGRGEERCAATALARLHVRGTTADWPGYLAGTGARTIDLP 2655

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
              A            A +  G        +W  +        ++          SL  LL
Sbjct: 2656 TYAFQHERYWPEQAPARLAQGAADPADAELWGAVERGDATELAALLGLRDEQHASLYALL 2715

Query: 301  DFLDIKR--EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL---ENKIPNIQKC 355
              L   R     K L + +        V + +    D + +  T      +  +  ++  
Sbjct: 2716 PALSSWRQHRQEKALLDSTRYRVAWRPVQATAAPVLDGTWLLVTADGIDSDEILDALRGH 2775

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALI--TADRNLARRVKLELTRFGINI 413
             +    +  D+   +   +A  L    D+++  + ++      + +              
Sbjct: 2776 GAQFETLVLDDACRDRAHLAGRLAAVRDQDRPLTGVLSLLPLADRSGAEAGAEAGAETGA 2835

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
              S G+ LS  L  ++  + L A        A+ T    PL        +      ALE 
Sbjct: 2836 QPSTGLALSLVLIQALADTGLAAPLWTLTRGAVTTGADDPLTHPLQAAVWGLGRVAALEH 2895

Query: 474  -VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--C 530
                 G  +    +D  +      A                   + L       +     
Sbjct: 2896 PQLWSGLIDLPAALDAPATQHLVSALAAEGGEDQIAVRATGAFGRRLVRHPQAELPPADA 2955

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
             T   T      +       + W   +      +      + P                 
Sbjct: 2956 FTARGTVLITGGTGALGAEAARWLARSGAEHLLLTSRRGPEAPGAAELAAEIEELGARVT 3015

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            +    +  +A     +D +        V           +  T  +         L G  
Sbjct: 3016 LAACDTADRAALAALLDSLPDEHPLTGVVHAAGVGQAAALADTPLADAAQAMAAKLLGA- 3074

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
              +       +     ++ S   +  +      +A +  +     H    R+ R     +
Sbjct: 3075 AHLDSLLDGHDLDFFVLVSSIAGVWGSAGQSAYSAANAYLDALAEH----RAARGLPATS 3130

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
            +A        +       D L KRG  +L     L    +   ++            R +
Sbjct: 3131 VAWGPWAEAGMATHEAVTDELHKRGLRFLAPATALAELRRAVVHRDVTVTVADIDWERYH 3190

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH---NIITELIKKRINKN 827
                  +       +   + L          +     RG        ++ +L++      
Sbjct: 3191 PVFTSTRPSALFDELAEVQALIRPEDESAAPEFAARLRGLDQDGQERLLGDLVRAEAAIA 3250

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
                +          F          +  R     +
Sbjct: 3251 LGHDSADAIAE-RRAFRDAGFDSLTAVELRKRLAAL 3285


>gi|291458664|ref|ZP_06598054.1| ATP-dependent DNA helicase PcrA [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291419197|gb|EFE92916.1| ATP-dependent DNA helicase PcrA [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 637

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 62/575 (10%), Positives = 140/575 (24%), Gaps = 65/575 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            + I   T+ + +ELR  F     +    L    +L  V            +     ++ 
Sbjct: 62  EILILSFTRASAEELRLRFCRRFPRTGREL-CFGTLHSVFFSILRKRY--GFGKRNILTE 118

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            +R   L  ++   +   P+  +                    ++N              
Sbjct: 119 GERQRLLEEILRKDKRPFPEGEEFRRALLLSFSERKRREESGDSEN-------------- 164

Query: 166 WEDLHALKNEKYGMWWLLAADF--------LKIASKYWTERLVELNASSPVG---YQIAL 214
                    E+ G     A  F         +   + + E +               ++L
Sbjct: 165 -RKKKGNPEEQGGRETAAALYFGSSFSEEDFERLYRSYREAMEREQKLDFDDMILRTLSL 223

Query: 215 MRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
           +R E E L   +     I++        A   L+  +         +   D       + 
Sbjct: 224 LRREGESLSFWQRRFRYILLDEFQDISEAQYELLRLLGEPERNLFFV--GDEDQSIYSFR 281

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             + K      S+   ++                         +      R  ++  S  
Sbjct: 282 GASPKIMQRFLSDYPDASRYL----------------------LPENYRARRELVRLSHR 319

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSA 390
             + + +R    L   +P   K    +      +   E   ++  L   L E     + A
Sbjct: 320 LIENNRLRFAKKLRAMLPGGGKGREYL----FPDTEREYRFLSELLSKELSEGLPGSEIA 375

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS-ILTSLLNAIFKLNDFMAIATL 449
           ++   R +   +   L R GI   +        +   +  L++ L    +      +  +
Sbjct: 376 VLYRTRLVLTSLIPFLLRRGIPFSLGERTEDPFSHLVTEDLSAYLRLSLRRGSRADLLRI 435

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
           +  P        + L    + L  +     +       ++ L  D        T      
Sbjct: 436 LNRP--PRFLSGEALREEGSGLPELLSYYKEKPKARERIRELRTDLQRIAALPTEAALLY 493

Query: 510 SRLSEEDKELAVLLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
            R     ++  +             L                  + +     L+  C  +
Sbjct: 494 IRKKMGYEDWLLGKGQRDPAPFSEILGMLSGRAEDFPEKEDFLRFLREGREELRAACRGK 553

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
             +   L      K L      +I+    I  +  
Sbjct: 554 EGERIRLMSYHSAKGLEFEIVHLIDVVEGIVPSRR 588



 Score = 44.5 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/301 (9%), Positives = 73/301 (24%), Gaps = 19/301 (6%)

Query: 423 TTLHSSIL-TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
           T      L   L   + +      IA L +  L         L R              +
Sbjct: 350 TEREYRFLSELLSKELSEGLPGSEIAVLYRTRLVLTSLIPFLLRRGIPFSLGERTEDPFS 409

Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                DL + +   +        +            E        + + ++        +
Sbjct: 410 HLVTEDLSAYLRLSLRRGSRADLLRILNRPPRFLSGEALREEGSGLPELLSYYKEKPKAR 469

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLD--EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
                  +         T    + +      +   L   +      S    ++   +   
Sbjct: 470 ERIRELRTDLQRIAALPTEAALLYIRKKMGYEDWLLGKGQRDPAPFSEILGMLSGRAEDF 529

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
               +++  +    +      + ++   + ++    ++ L F+ + L  + EG+ P   A
Sbjct: 530 PEKEDFLRFLREGREELRAACRGKEGERIRLMSYHSAKGLEFEIVHLIDVVEGIVPSRRA 589

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQR 718
                             E    +    +       R +    +    +     SR+L+ 
Sbjct: 590 DG---------------REGLEEERRCFYVALTRAKREVHIYVTKERYSRSVRPSRFLEE 634

Query: 719 L 719
           L
Sbjct: 635 L 635


>gi|85859568|ref|YP_461770.1| uvrD/rep helicase [Syntrophus aciditrophicus SB]
 gi|85722659|gb|ABC77602.1| uvrD/rep helicase [Syntrophus aciditrophicus SB]
          Length = 968

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 56/504 (11%), Positives = 131/504 (25%), Gaps = 59/504 (11%)

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-SLVLDRIATQKNNTHVPHWQSRLSE 514
           +       L R    ++  A    +       ++   +L           +    +    
Sbjct: 501 RPWGDIAVLCRTNRHMDRAAAALARAGIPTSGIRGREMLSLREGTALYLSLIALFTAHDG 560

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                A+  +D+       L++       T GN           + L+++     R L  
Sbjct: 561 RFIPRALKSLDYGEAQGATLMSAVAQLAETVGNAPRPHRFAAFASALRDLAPHFPRILIE 620

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
             ++E  +      +           +A  ++  +   +      P+ E +  + +    
Sbjct: 621 TLWDEAERYFVRPDA----------VDAAAFLRYLLT-MSHLITIPEGEHADRVKLATIH 669

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            ++ L F  + L    E                 +    L  ++  +   A D       
Sbjct: 670 GTKGLEFPHVFLFWKEEHDRAPEIP-------HPEDGCPLSLSKDELAFLATDPIEGAAA 722

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-- 752
                T    E    T    ++                + G     ++ ++  T ++P  
Sbjct: 723 IAEAVTVVKEERAEETANIIYVAATRAAKSLTILLRADREGA-LKGYSERMFTTAQEPIA 781

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD---RTDRG 809
             +R +     +        ++ + LI              D +    +        +RG
Sbjct: 782 DAERTEFGWRHDYGLEKPRPADHEDLIEPDLGDLPAVPADSDEMDAALRSAAIEAGIERG 841

Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
              H I+  L   R       +                               +   FL 
Sbjct: 842 LRIHAILARLTCDRQTIAPDSLAAEE-------------------------QAVVERFLH 876

Query: 870 HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929
            E+  +       V +   ++ ++      G  DR+ +     + + D+KTG        
Sbjct: 877 EEKVREILFRPGKVLVEQHIS-DTRTF---GIVDRLIIAPD-RITLIDFKTGRVGHLADK 931

Query: 930 QKLIDPQLSLEAAALKAGSFSQID 953
            +   PQ+      L+ G F+   
Sbjct: 932 YR---PQMLRYRMILQ-GLFAGRP 951


>gi|297202235|ref|ZP_06919632.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083]
 gi|197710248|gb|EDY54282.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083]
          Length = 774

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 63/659 (9%), Positives = 150/659 (22%), Gaps = 65/659 (9%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +SV     T RA  E+R    ++           ++       +       +   + P  
Sbjct: 112 SSVLAVTFTNRAAGEMRGRLRQLGASGV----QARTFHSAALRQLQYFWPKAVGGSMP-- 165

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+      + D                    I  +K    +         
Sbjct: 166 ---------RLVDRKIQLVADAAAACRIRLDRGELRDVTGEIEWSKVTQTVPSDY----- 211

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH--- 221
                 AL   K G     AA  +      + +   +          +  +    +    
Sbjct: 212 ------ALAAAKAGRETPRAAAEIAQLYAAYEDLKRDRAVIDFEDVLLLTVAILQDRHDI 265

Query: 222 --LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
              ++      ++       P   RL+       +   V+   D       +   T    
Sbjct: 266 AEQVRSQYQHFVVDEYQDVSPLQQRLLELWLGRRDNLCVV--GDASQTIYSFTGATPDHL 323

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
               +      HP  ++ KL+       + V     +  +  GR+               
Sbjct: 324 LDFRTR-----HPGATVVKLVRDYRSTPQVVHLANGLLAQARGRAA-------------- 364

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRN 397
                   ++ + ++   +    E  +E  EA   A  +R  +D   +  + A++    +
Sbjct: 365 ----DHRLELISQRRPGPEPVYTEYTDEPAEAEGAARRIRELMDAGVRASEIAILFRTNS 420

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +   +  L   G+   +                  L    +     A            
Sbjct: 421 QSETYEQALADAGVPYQLRGAERFFDRPEVRRAIVNLRGAARFGGNDARLD----DAVTL 476

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
               + +   +                   L +LV          +           +++
Sbjct: 477 PSQVRAVLSGEGWTSEPPAGSGAVRERWESLAALVNLAQDFAAARSGATLNDLVAELDER 536

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             A          +  L + K  +      + +++          +  ++E R+L  +  
Sbjct: 537 AGAQHAPTVEGVTLASLHSAKGLEWDAVFLVGVAEGMMPITYAKTDDEIEEERRLLYVGV 596

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
               + L   +S     G         ++D +       T +    +S  +    T    
Sbjct: 597 TRARERLHVSWSLSRSPGGRPNRRPSRFLDGLRPGSTATTGRTAGGRSGGVERGFTSPVG 656

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
                T              T         +    +  +              A   + 
Sbjct: 657 AAPRRTQRTPARCRVCGRTLTDAGEL---KLMRCEDCPSDMDEGLYERLRDWRAVQAQR 712


>gi|322488776|emb|CBZ24023.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 2840

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/677 (6%), Positives = 129/677 (19%), Gaps = 53/677 (7%)

Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
            A      + +L      H        +    +T     T                   +
Sbjct: 108 GAPDRHVARASLSSELENHEKAQEASRLRKDEATMVRRETEEKARIDMEVQVRRSAEIQV 167

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
                        E++              Q     L        E  +R          
Sbjct: 168 LREAEDQARREAEEQARRDAEEQARREALEQARREALEQARREAEEQARREAEEQARREA 227

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                 ++                 +                   R EA   A   R +L
Sbjct: 228 LEQARREAEEQARREAEEQARREALE-----------------QARREAEEQAR--REAL 268

Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
           ++ ++++        L +  +  L +     +  A                     +   
Sbjct: 269 EQARREAEEQARREALEQARREALEQARREAEEQARREAEEQARREAEEQARREALEQAR 328

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             A               E+   R                      +   L++   +   
Sbjct: 329 REA---------------EEQARREALEQARREAEEQARREAEEQARREALEQARREAEE 373

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                 + +   E +E A                 +          +  +  +      +
Sbjct: 374 QARREAKEQARREAEEQARR-----EALEQARREAEEQARREALEQARREAEEQARREAK 428

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                E  +       E+ +  +   +         +    +           E  +   
Sbjct: 429 EQARREAEEQARREALEQARREAEEQACREALEQARREAEEQARREAEEQARREAEEQAR 488

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
            ++         E      +        E    +   +    +        L+ A +   
Sbjct: 489 REALEQARREAEEQARREAEEQARREAEEQARREALEQARREAEEQARREALEQARREAE 548

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
           + A    +    R                 +    R   L         + R +      
Sbjct: 549 EQARREALEQARREAEEQARREAEEQARREAEEQARREALEQARREAEEQARREALEQAR 608

Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
           R+ +    +   ++ +     +A+      +  + L         +   +       + +
Sbjct: 609 REAEEQACREALEQARREAKEQARREAEEQARREALEQARREAEEQARREALEQARREAE 668

Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFH 861
                        + +  ++   +   E     ++       +E         + +    
Sbjct: 669 EQAR------REALEQARREAKEQARREAEEQARREALEQARREAEEQARREALEQARRE 722

Query: 862 KISHSFLEHEEKIQSSI 878
                    E+  + ++
Sbjct: 723 -------AEEQARREAL 732



 Score = 44.1 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/423 (6%), Positives = 85/423 (20%), Gaps = 39/423 (9%)

Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                       R         + +         Q     +   +    E+ +  A    
Sbjct: 324 LEQARREAEEQARREALEQARREAEEQARREAEEQARREALEQARREAEEQARREAKEQA 383

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
               +        +  +             +      +    +   +      E+  +  
Sbjct: 384 RREAEEQARREALEQARREAEEQARREALEQARREAEEQARREAKEQARREAEEQARREA 443

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
                +  E  +C +A      +   +       + + E           ++R    +  
Sbjct: 444 LEQARREAEEQACREALEQARREAEEQARREAEEQARREAEEQARREALEQARREAEEQA 503

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
                 +                 + +   +   + + QA  + E       L   R   
Sbjct: 504 RREAEEQARREAEEQARREALEQARREAEEQARREALEQARREAEEQARREALEQARREA 563

Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
           E      A    +R              +R          L+   ++   +  +      
Sbjct: 564 EEQARREAEEQARREAEEQARREALEQARREAEEQARREALEQARREAEEQACREALEQ- 622

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
                                 ARR  K       ++              + +  ++  
Sbjct: 623 ----------------------ARREAKEQARREAEE--------QARREALEQARREAE 652

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDII-WRHLFHKISHSFLEHEEKIQSSIEKIFV 883
            +   E     ++  +    +E L         +             E+  + ++E+   
Sbjct: 653 EQARREALEQARREAEEQARREALEQARREAKEQARRE-------AEEQARREALEQARR 705

Query: 884 NIP 886
              
Sbjct: 706 EAE 708


>gi|330988759|gb|EGH86862.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            lachrymans str. M301315]
          Length = 1230

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 100/960 (10%), Positives = 223/960 (23%), Gaps = 134/960 (13%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A           + +   +   + L   
Sbjct: 271  FEKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAFEAMAQLKAALDSLPKP 330

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++   W+ +A F +        R  E+     +    A + +        L++  
Sbjct: 331  DAAVLQHAAQWV-SARFEEE-----KRRRAEMGFDDMLLRLDAALHSAGGERLATLIREQ 384

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  ++           +    D       +      +     
Sbjct: 385  FPVALIDEFQDTDPVQYRIFDSIYRLEGNDEQTGLFLIGDPKQAIYAFRGADIYTYLRAR 444

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T    H   +  +    +      V        +  G  +  +        SD     
Sbjct: 445  QATDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRTQGRGAFLFRNDQGNQVPFSDALAQG 504

Query: 344  ILENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK-------- 387
              E    +     +  V  +E++         ++ A S A  +   L+  ++        
Sbjct: 505  RKETLEVDGAPLTALTVWYLESEQPVSGVIYRQQLAASCASEIVRLLNAGQQGRAGFAML 564

Query: 388  ----------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                        A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A
Sbjct: 565  DKPLRGLRPADIAILVRDGKEAQAVRQQLSARGVRSVYLSDKDSVFAAQEAHDLLSWLKA 624

Query: 437  IFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              +        A    +   L                  ++  RG +  +    +  ++ 
Sbjct: 625  CAEPDSERTLRAALACITLDLPLAELERLNQDELAWERRVMQFRGYRAVWRSQGVLPMLR 684

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +        +        E      + L + + Q    L   +        +L++S  
Sbjct: 685  RLLHDFALPQTLM--TRTDGERVLTNLLHLSELLQQAAAELDGEQALIRHLGDHLALSGQ 742

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-- 611
                    Q + L+   +L  +    + K L      +    S    +            
Sbjct: 743  AGE----EQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDAD 798

Query: 612  ------LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                  L   E +  + +       L  L   L   +     G+ +      +      S
Sbjct: 799  GNSQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNASNSMLHRS 858

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             +           +         ++A G   +      +    PT       R       
Sbjct: 859  ALGYLLGGGVALAESAELKVWLRDLAQGCDAIAL----QPVPEPTDERFSAPRNEAALVK 914

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                        ++     L             P  P             ++L +D    
Sbjct: 915  LLVPKRCAAENWWIASYSALRIGDTVTTGADESPDSPQA-----------QKLFDDERLD 963

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                   L       + P   + GT  H ++     +         + L   +      +
Sbjct: 964  PEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFAVTAHAPDKLQDAVARRCNRR 1023

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV-----------NIPAKMAIESI 894
                      W +         L    ++      + +            +    A  ++
Sbjct: 1024 G------WAGWINTLSDWLQHMLNMPLRLSPDATPVALGELDQPNQYRIEMEFWFASNNV 1077

Query: 895  GIH---------------------------LTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
             +                              GF D     + G   + DYK+      +
Sbjct: 1078 NVAQMDALVRRFTHNNAPRAATETVSLNGMFKGFIDLTFEHE-GRYYVADYKSNWLGTDD 1136

Query: 928  TA-----------QKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKID 972
            TA               D Q  L   AL     +++      + +    Y+ L+    + 
Sbjct: 1137 TAYTELAMETAILDNRYDLQYVLYLLALHRQLKARMADYDYDQHMGGALYLFLRGSRSVS 1196


>gi|225388061|ref|ZP_03757785.1| hypothetical protein CLOSTASPAR_01795 [Clostridium asparagiforme
           DSM 15981]
 gi|225045862|gb|EEG56108.1| hypothetical protein CLOSTASPAR_01795 [Clostridium asparagiforme
           DSM 15981]
          Length = 851

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 52/168 (30%), Gaps = 18/168 (10%)

Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
                   +       RGT +H  +  L       +  ++   +K ++++ + +      
Sbjct: 667 GAGEGGPERAGAVGAARGTAYHRALECL-DLGKLHSREDVRAALKSLLETGYLEREAYDA 725

Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG---------IHLTGFA 902
           +D +   +   + +S L           ++       + I +           + + G  
Sbjct: 726 LDEM---VIFTMLNSPLGQRMAEAQRDGRLHREQQFIIGIPAREMGRGDSQELVLVQGVI 782

Query: 903 DRIDLLKSGFVDITDYKTGDNPKKET----AQKLIDPQLSLEAAALKA 946
           D     + G + + DYKT   P          +    Q++    AL+ 
Sbjct: 783 DAYLEEEDG-LVLIDYKTDRVPGGRAGRECLAERYRQQVAYYQRALEQ 829


>gi|254388949|ref|ZP_05004180.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294814884|ref|ZP_06773527.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197702667|gb|EDY48479.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294327483|gb|EFG09126.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 745

 Score = 49.9 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 60/695 (8%), Positives = 142/695 (20%), Gaps = 91/695 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           ASV     T RA  E+R    ++           ++                        
Sbjct: 88  ASVLAVTFTNRAAGEMRGRLRQLGAGGV----QARTFHSAA------------------- 124

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN--AIWLAKNLADIIDIIETE 162
                  L +L   W   +   +  L       +  S A          L D      T 
Sbjct: 125 -------LRQLQYFWPRAVGGEVPRLLERKIQLVAESAARCRFRLDRNELRD-----ATS 172

Query: 163 EKKWEDLHALKNEKYGMWWLLAADF-------LKIASKYWTERLVELNASSPVGYQIALM 215
           E +W  +       Y      +          +      + +   +          +  +
Sbjct: 173 EIEWAKVTQTVPADYPAAVAKSLRDAPRDPAEISQIYAMYEQLKRDRAVIDFEDVLLLTV 232

Query: 216 RAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
               +       ++      ++       P   RL+       +   V+   D       
Sbjct: 233 GILQDRPDIADQIRRQYQHFVVDEYQDVSPLQQRLLELWLGDRDSLCVV--GDASQTIYS 290

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
           +   T        +      HP  ++ KL+       + V     + ++  GR+      
Sbjct: 291 FTGATPDHLLSFRTR-----HPSATVVKLVRDYRSTPQVVHLANGLLSQARGRAA----- 340

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKK 388
                            ++ + ++   + +  E  +E  EA   A  +R  +D      +
Sbjct: 341 -------------EHRLELVSQRESGPEPSYEEYPDEPAEAEGTARRIRELIDTGVPAGE 387

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            A++      +   +  L   G+   +                  L    +     ++  
Sbjct: 388 IAVLYRVNAQSEVYEQALADAGVPYQLRGAERFFERQEVREAGVALRGAARAGGNDSLLD 447

Query: 449 ------------LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                       L     +          R +       +R  ++        +L     
Sbjct: 448 SADDLPGQVRAVLSTQGWSTEPPAGSGAVRDRWESLAALVRLAEDFARARSGATLADLVA 507

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
              +          +        A   ++     +  L            +  I +  + 
Sbjct: 508 ELDERAAAQHAPTVQGVTLASMHAAKGLEWDAVFVVGLTEGMMPITYAKTDEQIEE-ERR 566

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L     G+        +        A              G 
Sbjct: 567 LLYVGVTRARFHLSLSWALSRSPGGRASRRPTRFLNGLRPGSAAAGPRGTAGAGGAERGS 626

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
             K +      +   G   +       +        +      +           L    
Sbjct: 627 RRKRRGPALCRV--CGKTLTDAGEMKLMRCEDCPSDMDEGLYERLREWRSAQARGLGQPA 684

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
              +  +       A        +R          
Sbjct: 685 YCVFTDKTLIAIAEAVPADEAELSRISGVGGRKLE 719


>gi|322494904|emb|CBZ30207.1| conserved hypothetical protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 2005

 Score = 49.9 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 90/822 (10%), Positives = 215/822 (26%), Gaps = 24/822 (2%)

Query: 85   VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
             E++  A    +  L   +   Q   E     L    +  + +     ++        A+
Sbjct: 816  AEDQAEALASDNERLAAELERAQEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLAD 875

Query: 145  AIWLAKN---LADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIASKYWT- 196
               LA +   LA  ++  + E +      E        +      LA+D  ++A++    
Sbjct: 876  NRKLASDNERLAAELERAQEEAERLAGDLEKAQEEGERQLADNRKLASDNERLAAELERA 935

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            +   E  A      +        E      +G   +A +        RL + +      A
Sbjct: 936  QEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLADNRKLASDNERLAAELERAQEEA 995

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH--PQYSLAKLLDFLDIKREDVKRLG 314
              L G              E            + +        +L   L+  +E+ +RL 
Sbjct: 996  ERLAGDLEKAEEEAETLAGELQKAQEEGERQLADNRKLASDNERLAAELERAQEEAERLA 1055

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER------ 368
                +    +  ++           R          + ++  +++   + + ER      
Sbjct: 1056 GDLEKAEEEAETLAGELQKAQEEGERQLADNRKLASDNERLAAELERAQEEAERLAGDLE 1115

Query: 369  ---EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
               EEA ++A  L+ + +E +++ A      +   R+  EL R     +  AG       
Sbjct: 1116 KAEEEAETLAGELQKAQEEGERQLADNRKLASDNERLAAELERAQEEAERLAGDLEKAEE 1175

Query: 426  HS-SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
             + ++   L  A  +    +A    +     +     +        L     +  + +  
Sbjct: 1176 EAETLAGELQKAQEEGERQLADNRKLASDNERLAAELERAQEEAERLAGDLEKAEEEAET 1235

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
            +        +    Q  +       +     + E A    + +   +      +  +   
Sbjct: 1236 LAGELQKAQEEGERQLADNRKLASDNERLAAELERAQEEAERLAGDLE--KAEEEAETLA 1293

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                   +  +  +   + +  D  R    L   +E     +   +  +     +     
Sbjct: 1294 GELQKAQEEGERQLADNRKLASDNERLAAELERAQEETERLAGDLEKAQEEGERQLADNR 1353

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
             +      +  E  + + E       L   E          L    E    +        
Sbjct: 1354 KLASDNERLAAELERAQEEAERLAGDLEKAEEEA-ETLAGELQKAQEEGERQLADNRKLA 1412

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
            S   +    L+ A++   + A D E A           L++            R L    
Sbjct: 1413 SDNERLAAELERAQEEAERLAGDLEKAEEEAE-TLAGELQKAQEEGERQLADNRKLASDN 1471

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                  L++  +        L+   ++      +     E   R  + +      N+  A
Sbjct: 1472 ERLAAELERAQEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLADNRKLASDNERLA 1531

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                R  +         +    +  TL   +     +               + + +  E
Sbjct: 1532 AELERAQEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLADNRKLASDNERLAAELE 1591

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
            +                +     L    K+ S  E++   + 
Sbjct: 1592 RAQEEAERLAGDLEKAQEEGERQLADNRKLASDNERLAAELE 1633



 Score = 46.8 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 106/821 (12%), Positives = 215/821 (26%), Gaps = 64/821 (7%)

Query: 79   KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL---IWRNKLPDIIKDLYPESP 135
            +  GD+ + +  A+ L    L       +R L   R +           +  ++      
Sbjct: 941  RLAGDLEKAEEEAETLA-GELQKAQEEGERQLADNRKLASDNERLAAELERAQEEAERLA 999

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
              L  +   A  LA  L    +  E +      L +  NE+       A +  +  +   
Sbjct: 1000 GDLEKAEEEAETLAGELQKAQEEGERQLADNRKLAS-DNERLAAELERAQEEAERLAGDL 1058

Query: 196  TERLVELNASSPVGY--QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
             +   E    +      Q    R  A++    +    + A    +     RL   +    
Sbjct: 1059 EKAEEEAETLAGELQKAQEEGERQLADNRKLASDNERLAAELERAQEEAERLAGDLEKAE 1118

Query: 254  NGAIVLPG-LDCHIPTAIWNTITEKSTNITSSNTTYS-THPQYSLAKLLDFLDIKREDVK 311
              A  L G L              +     +          Q    +L   L+   E+ +
Sbjct: 1119 EEAETLAGELQKAQEEGERQLADNRKLASDNERLAAELERAQEEAERLAGDLEKAEEEAE 1178

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
             L     +                + + R    LE      ++   D+         EEA
Sbjct: 1179 TLAGELQKAQEEGERQLADNRKLASDNERLAAELERAQEEAERLAGDLE-----KAEEEA 1233

Query: 372  ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS-SIL 430
             ++A  L+ + +E +++ A      +   R+  EL R     +  AG        + ++ 
Sbjct: 1234 ETLAGELQKAQEEGERQLADNRKLASDNERLAAELERAQEEAERLAGDLEKAEEEAETLA 1293

Query: 431  TSLLNAIFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
              L  A  +    +A    +        A+    ++   R    LE     G +   D  
Sbjct: 1294 GELQKAQEEGERQLADNRKLASDNERLAAELERAQEETERLAGDLEKAQEEGERQLADNR 1353

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC-ITPLVTYKTNKNSTC 545
             L S      A  +         +   E+ +E A  L   + +           N+    
Sbjct: 1354 KLASDNERLAAELERAQEEAERLAGDLEKAEEEAETLAGELQKAQEEGERQLADNRKLAS 1413

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
             N  ++   +      + +  D  +       EEE +TL+    K  E G    A+  + 
Sbjct: 1414 DNERLAAELERAQEEAERLAGDLEKA------EEEAETLAGELQKAQEEGERQLADNRKL 1467

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                 RL        +  +     +    E          L    E    +        S
Sbjct: 1468 ASDNERLAAELERAQEEAERLAGDLEKAEEE--AETLAGELQKAQEEGERQLADNRKLAS 1525

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
               +    L+ A++   + A D E A                          +     G 
Sbjct: 1526 DNERLAAELERAQEEAERLAGDLEKA---------------EEEAETLAGELQKAQEEGE 1570

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                + +K          +L+   ++   +R         +      ++ ++L +D   +
Sbjct: 1571 RQLADNRKLASDNERLAAELERAQEE--AERLAGDLEKAQEEGERQLADNRKLASDNERL 1628

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
             A      +       D ++ +                      E      Q      E+
Sbjct: 1629 AAELERAQEEAERLAGDLEKAE-------------------EEAETLAGELQKAQEEGER 1669

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
            +                      E  E++   +EK      
Sbjct: 1670 QLADNRKLASDNERLAAELERAQEEAERLAGDLEKAEEEAE 1710


>gi|302558540|ref|ZP_07310882.1| ATP-dependent DNA helicase (UvrD/REP) [Streptomyces griseoflavus
           Tu4000]
 gi|302476158|gb|EFL39251.1| ATP-dependent DNA helicase (UvrD/REP) [Streptomyces griseoflavus
           Tu4000]
          Length = 771

 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/660 (8%), Positives = 138/660 (20%), Gaps = 63/660 (9%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +SV     T RA  E+R    ++           ++       +              + 
Sbjct: 105 SSVLAVTFTNRAAGEMRGRLRQLGAVGV----QARTFHSAALRQLQYFW------PKAIG 154

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                  L RL+      + D                    I  +K    +         
Sbjct: 155 G-----SLPRLVDRKIQLVADAAAACRIRLDRGELRDVTAEIEWSKVTQTVPADYVAAAA 209

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH--- 221
           K          +                  + E   E          +  +    +    
Sbjct: 210 KAGREAPRDPAETAQ-----------LYAAYEELKRERAVIDFEDVLLLTVAVLQDRHDI 258

Query: 222 --LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
              ++      ++       P   RL+           V+   D       +   T    
Sbjct: 259 AEQVRAQYQHFVVDEYQDVSPLQQRLLELWLGERENLCVV--GDASQTIYSFTGATPDHL 316

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
               +      HP  ++ KL+       + V+    + ++  GR+               
Sbjct: 317 LDFRTR-----HPGATVVKLVRDYRSTPQVVRLANGLLSQARGRAA-------------- 357

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397
                   ++ + +   ++    E  +E  EA   A  +R  +D      + A++     
Sbjct: 358 ----DHRLELVSQRPAGTEPVFTEYSDEPAEAEGAARRIRELVDSGVPASEIAVLFRTNA 413

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +   +  L   G+   +                  L    +     ++      P    
Sbjct: 414 QSETYEQALADAGVPYQLRGAERFFDRPEVRKAGIALRGAARFGGNDSLLD--DAPDLPS 471

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                     +                   L +LV                      +++
Sbjct: 472 QVRAV--LSGEGWTPQPPAGSGAVRERWESLAALVNLAQDFAAARPGATLADLVAELDER 529

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             A          +  L   K  +      + +++          +  ++E R+L  +  
Sbjct: 530 AGAQHAPTVQGVTLASLHAAKGLEWDVVFLVGVAEGMMPITYAKTDEQVEEERRLLYVGV 589

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
               + L   +S     G         +++ +         +  +  +  +       + 
Sbjct: 590 TRARERLHLSWSLSRSPGGRPNRRPTRFLEGLRPGSHTAAARGGVAGTGGVERGSFGAAS 649

Query: 638 LLNFDTLILG-GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
                                          +    +  T              A   R 
Sbjct: 650 APAAPAPRRRQRSPARCRVCGRTLTDAGEMKLMRCEDCPTDMDEGLYERLREWRAVQARR 709


>gi|258652891|ref|YP_003202047.1| hypothetical protein Namu_2712 [Nakamurella multipartita DSM 44233]
 gi|258556116|gb|ACV79058.1| hypothetical protein Namu_2712 [Nakamurella multipartita DSM 44233]
          Length = 543

 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 13/168 (7%)

Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
           + +    S S  K + +        R+L++      +        GT+ H ++  L++  
Sbjct: 32  DVRRPRLSASVAKSVSSCAARYVGERVLRMGV--ESEDPFAPAPVGTVAHTVMERLMQLA 89

Query: 824 INKNTPEINHLMKQIIDSHFEKENL---PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
             K TP     +   +       N     P + +     +  +  S       I    + 
Sbjct: 90  RTKRTPLAARRIMYQLMVDLTSPNPDKHWPGLPVERTPEWLALVDSAFMGLFGIVDPRKI 149

Query: 881 IFVNIPAKMAIES---IGIHLTGFADRI--DLLKSGFVD-ITDYKTGD 922
           +      ++ ++     G+   GF D +       G    I DYKTG 
Sbjct: 150 VV--HKTELRLDDVFIGGVPFKGFIDMVSQAEDDDGRWLEIVDYKTGA 195


>gi|24373706|ref|NP_717749.1| exodeoxyribonuclease V, beta subunit [Shewanella oneidensis MR-1]
 gi|24348071|gb|AAN55193.1|AE015657_5 exodeoxyribonuclease V, beta subunit [Shewanella oneidensis MR-1]
          Length = 1259

 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 95/890 (10%), Positives = 216/890 (24%), Gaps = 127/890 (14%)

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI------IIAGSTGSIPATAR 244
             S+ + ++    N  +P      L  A   +     K         +I     + P    
Sbjct: 339  ISERFAKQKQLKNVLTPDDLLTTLAAAMLANPDTLPKAVASRFPVALIDEFQDTDPLQFA 398

Query: 245  LMSTVANHPNG------------------AIVLPGLDCHIPTAIWNTIT--EKSTNITSS 284
            + S +     G                    +L   D       +              +
Sbjct: 399  IFSWIYQTRLGVKAQNSTAVEPKARTDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQT 458

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
               Y     Y  ++ L               +S +      V + +            + 
Sbjct: 459  QAHYFLDTNYRSSRNLVAGVNHLFAQHPNPFIS-QSIPFDRVKTPASAAAKQLVESTANS 517

Query: 345  LENKIPNIQKCFSDVALIEADNEREE--AISIAIALRMSLDENKK---------KSALIT 393
               ++  +++  + +    A     E  A  I   L  + +               A++ 
Sbjct: 518  AALRLKLLREGETGLNKASARQTLAEDTAAEITRLLTEAANGQCHTPKGPLIAKDIAILV 577

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
             DRN A  +K  L++  I     +   +  T+ +  +  +L A+    D  A+ + +   
Sbjct: 578  RDRNEAAVMKTALSKRQIGAVFLSRDSVFDTVEAREMALILRALASPKDERALRSALATA 637

Query: 454  LAKFGFPEKYLS---RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
            L  +   + +       +  + L         +    +   +L           +    S
Sbjct: 638  LLGYSAEQIHAFNQDEEQRQMLLEQFFALHQIWQKRGIMPALLSLANATHMVARLLQTPS 697

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
              +  D++      D        L  ++          +  D     +   +   +D   
Sbjct: 698  VTATADQDSEE--PDEASNGERRLTDFRHLAELLQQKATEIDGISALLNWYEQQLIDNTG 755

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK-----PKIEKS 625
                    E  + L  + +     G       I ++ +        T             
Sbjct: 756  TDEQQLRLESEQNLVQIVTIHKSKGLEYPVCFIPFVSLARDNRRRPTPMLYHRTDADGAQ 815

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF-------LSRVMQSDLNLKTAE 678
              ++ +   +          L      ++   T             SR++++ +  +  E
Sbjct: 816  ELVWDIEGTDEGWEQAKQETLAEDLRLLYVALTRPVYLCYLYIANHSRMLKAGIKSQLHE 875

Query: 679  KYIGQ------AAHDFEMANGTRHLIY-------------TRSLRENNIPTIASRWLQRL 719
              IG       A  DF   +     +                +    +            
Sbjct: 876  TAIGYLLGVTDAGCDFARLHSAAQALLNGVESNAQAISVECVADNIADNKLHTGETQSHT 935

Query: 720  LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
            L             R   Y    +   +    P                + S S  +   
Sbjct: 936  LNARNVTRQYRTPWRVGSYSGLVKNAPHAKASPGADDEVSAVFGAEPANSLSESSWQDSA 995

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL-IKKRINKNTPEINHLMKQI 838
            + P        L L     F++  +    G+  H ++  +   +       E+   M Q 
Sbjct: 996  DVPQ-------LPLLNRFSFERGANA---GSFMHLVLELIDFTQAKIDLPRELPKAMLQY 1045

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISH--SFLEHEEKIQSSI-EKIFVNIPA-------- 887
              +   +  L      I +     ++     +  E  + + + +   V +          
Sbjct: 1046 GIAPEWQTVLQDWYMEILQAPLALMAQDNQLINPELCLAALVPQHTLVEMEFYLPLNRLK 1105

Query: 888  ---------------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA--- 929
                            +  + +   L GF D     + G   I DYK+        A   
Sbjct: 1106 DAELNQLLGQFGYDTALHFDELQGMLKGFIDLTFEYQ-GKFYIADYKSNHLGDTIQAYHY 1164

Query: 930  --------QKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ 967
                        D Q  L + AL      ++        +   +Y+ L+ 
Sbjct: 1165 GALKQAISDHRYDLQYILYSLALHRYLAMRLPNYDYDIHIGGCYYLFLRG 1214


>gi|289624489|ref|ZP_06457443.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            aesculi str. NCPPB3681]
 gi|330870390|gb|EGH05099.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            aesculi str. 0893_23]
          Length = 1230

 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 97/957 (10%), Positives = 217/957 (22%), Gaps = 134/957 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A           + +   +   + L   
Sbjct: 271  FEKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAFEAMAQLKAALDSLPKP 330

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++   W+ A        +    R  E+     +    A +          L++  
Sbjct: 331  DAAVLQHAAQWVSAR------FEEEKRRRAEMGFDDMLLRLDAALHGAGGERLATLIREQ 384

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  ++           +    D       +      +     
Sbjct: 385  FPVALIDEFQDTDPVQYRIFDSIYRLEANDEQTGLFLIGDPKQAIYAFRGADIYTYLRAR 444

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T    H   +  +    +      V        +  G  +           SD     
Sbjct: 445  QATDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRPQGRGAFLFRDDQGNQVPFSDALAQG 504

Query: 344  ILENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK-------- 387
              E    +     +  V  +E++         ++ A S A  +   L+  ++        
Sbjct: 505  RKETLEVDGAPLTALTVWHLESEQPVSGVIYRQQLAASCASEIVRLLNAGQQGRAGFAML 564

Query: 388  ----------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                        A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A
Sbjct: 565  DKPLRGLRPADIAILVRDGKEAQAVRQQLSARGVRSVYLSDKDSVFAAQEAHDLLSWLKA 624

Query: 437  IFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              +        A    +   L                  ++  RG +  +    +  ++ 
Sbjct: 625  CAEPDSERTLRAALACITLDLPLAELERLNQDELAWERRVMQFRGYRAVWRSQGVLPMLR 684

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +        +        E      + L + + Q    L   +        +L++S  
Sbjct: 685  RLLHDFALPQTLM--TRTDGERVLTNLLHLSELLQQAAAELDGEQALIRHLGDHLALSGQ 742

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-- 611
                    Q + L+   +L  +    + K L      +    S    +            
Sbjct: 743  AGE----EQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDAD 798

Query: 612  ------LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                  L   E +  + +       L  L   L   +     G+ +      +      S
Sbjct: 799  GNSQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNASNSMLHRS 858

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             +           +         ++A G   +      +    PT       R       
Sbjct: 859  ALGYLLGGGVALAESAELKVWLRDLAQGCDAIAL----QPVPEPTDERFSAPRNEAALVK 914

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                  +     ++     L             P  P             ++L +D    
Sbjct: 915  LLVPKRRAAENWWIASYSALRIGDTVTAGADESPDSPQA-----------QKLFDDERLD 963

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                   L       + P   + GT  H ++     +         + L   +      +
Sbjct: 964  PEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFAVTAHAPDKLQDAVARRCNRR 1023

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV-----------NIPAKMAIESI 894
                      W +         L    ++      + +            +    A  ++
Sbjct: 1024 G------WAGWINTLSDWLQHMLNLPLRLSPDATPVALGELDQPNQYRIEMEFWFASNNV 1077

Query: 895  GIH---------------------------LTGFADRIDLLKSGFVDITDYKTG------ 921
             +                              GF D     + G   + DYK+       
Sbjct: 1078 NVAQMDALVRRFTHNNAPRAATETVSLNGMFKGFIDLTFEHE-GRYYVADYKSNWLGIDD 1136

Query: 922  -----DNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKF 969
                    +        D Q  L   AL     +++      + +    Y+ L+   
Sbjct: 1137 TAYTELAMEAAILDNRYDLQYVLYLLALHRQLKARMADYDYDQHMGGALYLFLRGSR 1193


>gi|167631017|ref|YP_001681516.1| ATP-dependent deoxyribonuclease subunit a [Heliobacterium
            modesticaldum Ice1]
 gi|251764526|sp|B0TDI0|ADDA_HELMI RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|167593757|gb|ABZ85505.1| ATP-dependent deoxyribonuclease subunit a [Heliobacterium
            modesticaldum Ice1]
          Length = 1396

 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 73/305 (23%), Gaps = 35/305 (11%)

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
              A    L     +    +T  +                        +E    T  +   
Sbjct: 1064 APALGATLPENNLTMTKNETMTEQERIDGSSRWRLFYAAKKELIGLRKETGSETPFNPVW 1123

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
               L         +L      +      L     +    R K      +     S     
Sbjct: 1124 LEKLRRLEPIIPTDLVDASLSWSYPYTGLSGIAAKVAVSRIKKQFVWHSPETPPSSETPP 1183

Query: 777  QLINDPY------------AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
             L   P             +  A   L+  F+    +    T+RG+  H  +  L     
Sbjct: 1184 SLEIPPSLETPPSLETQTPSPDALVDLRPRFLQ-QDRRLTATERGSAVHLFLQHLDLAG- 1241

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFV 883
              +   I     +++            ++             FLE     +    +++  
Sbjct: 1242 EISQAGIAGQADRLVKLELLSLEQRQALNEEE-------ILRFLESPLGHRLRKAKQVMR 1294

Query: 884  NIPAKMAIE-----------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932
             +P  +A+               + + G  D +     G   + DYKT   P     ++ 
Sbjct: 1295 EVPFTLALPAAEIYPEKRAEGESVIIQGVIDCLFEEDDG-WLLLDYKTDRCPVGMDRERW 1353

Query: 933  IDPQL 937
            +  QL
Sbjct: 1354 LQ-QL 1357


>gi|330891622|gb|EGH24283.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. mori
            str. 301020]
          Length = 1230

 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 99/960 (10%), Positives = 221/960 (23%), Gaps = 134/960 (13%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A           + +   +   + L   
Sbjct: 271  FEKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAFEAMAQLKAALDSLPKP 330

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++   W+ +A F +        R  E+     +    A + +        L++  
Sbjct: 331  DAAVLQHAAQWV-SARFEEE-----KRRRAEMGFDDMLLRLDAALHSAGGERLATLIREQ 384

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  ++           +    D       +      +     
Sbjct: 385  FPVALIDEFQDTDPVQYRIFDSIYRLEGNDEQTGLFLIGDPKQAIYAFRGADIYTYLRAR 444

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T    H   +  +    +      V        +  G  +           SD     
Sbjct: 445  QPTDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRPQGRGAFLFRDDQGNQVPFSDALAQG 504

Query: 344  ILENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK-------- 387
              E          +  V  +E++         ++ A S A  +   L+  ++        
Sbjct: 505  RKETLEVEGAPLTALTVWHLESEQPVSGVIYRQQLAASCASEIVRLLNAGQQGRAGFAML 564

Query: 388  ----------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                        A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A
Sbjct: 565  DKPLRGLRPADIAILVRDGKEAQAVRQQLSARGVRSVYLSDKDSVFAAQEAHDLLSWLKA 624

Query: 437  IFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              +        A    +   L                  ++  RG +  +    +  ++ 
Sbjct: 625  CAEPDSERTLRAALACITLDLPLAELERLNQDELAWERRVMQFRGYRAVWRSQGVLPMLR 684

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +        +        E      + L + + Q    L   +        +L++S  
Sbjct: 685  CLLHDFALPQTLM--TRTDGERVLTNLLHLSELLQQAAAELDGEQALIRHLGDHLALSGQ 742

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-- 611
                    Q + L+   +L  +    + K L      +    S    +            
Sbjct: 743  AGE----EQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDAD 798

Query: 612  ------LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                  L   E +  + +       L  L   L   +     G+ +      +      S
Sbjct: 799  GNSQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNASNSMLHRS 858

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             +           +         ++A G   +      +    PT       R       
Sbjct: 859  ALGYLLGGGVVLAESAELKVWLRDLAQGCDAIAL----QPVPEPTDERFSAPRNEAALVK 914

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                  +     ++     L             P  P             ++L +D    
Sbjct: 915  LLVPKRRAAENWWIASYSALRIGDTVTTGADESPDSPQA-----------QKLFDDERLD 963

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                   L       + P   + GT  H ++     +         + L   +      +
Sbjct: 964  PEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFAMTAHAPDKLQDAVARRCNRR 1023

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV-----------NIPAKMAIESI 894
                      W +         L  + ++      + +            +    A  ++
Sbjct: 1024 G------WAGWINTLSDWLQHMLNMQLRLSPDATPVALGELDQPNQYRIEMEFWFASNNV 1077

Query: 895  GIH---------------------------LTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
             +                              GF D           + DYK+      +
Sbjct: 1078 NVAQMDALVRRFTHNNAPRAATETVSLNGMFKGFIDLTFEH-DSRYYVADYKSNWLGTDD 1136

Query: 928  TA-----------QKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKID 972
            TA               D Q  L   AL     +++      + +    Y+ L+    + 
Sbjct: 1137 TAYTELAMETAILDNRYDLQYVLYLLALHRQLKARMADYDYDQHMGGALYLFLRGSRSVS 1196


>gi|289649175|ref|ZP_06480518.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            aesculi str. 2250]
          Length = 1230

 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 97/957 (10%), Positives = 217/957 (22%), Gaps = 134/957 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A           + +   +   + L   
Sbjct: 271  FEKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAFEAMAQLKAALDSLPKP 330

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++   W+ A        +    R  E+     +    A +          L++  
Sbjct: 331  DAAVLQHAAQWVSAR------FEEEKRRRAEMGFDDMLLRLDAALHGAGGERLATLIREQ 384

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  ++           +    D       +      +     
Sbjct: 385  FPVALIDEFQDTDPVQYRIFDSIYRLEANDEQTGLFLIGDPKQAIYAFRGADIYTYLRAR 444

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T    H   +  +    +      V        +  G  +           SD     
Sbjct: 445  QATDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRPQGRGAFLFRDDQGNQVPFSDALAQG 504

Query: 344  ILENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK-------- 387
              E    +     +  V  +E++         ++ A S A  +   L+  ++        
Sbjct: 505  RKETLEVDGAPLTALTVWHLESEQPVSGVIYRQQLAASCASEIVRLLNAGQQGRAGFAML 564

Query: 388  ----------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                        A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A
Sbjct: 565  DKPLRGLRPADIAILVRDGKEAQAVRQQLSARGVRSVYLSDKDSVFAAQEAHDLLSWLKA 624

Query: 437  IFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              +        A    +   L                  ++  RG +  +    +  ++ 
Sbjct: 625  CAEPDSERTLRAALACITLDLPLAELERLNQDELAWERRVMQFRGYRAVWRSQGVLPMLR 684

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +        +        E      + L + + Q    L   +        +L++S  
Sbjct: 685  RLLHDFALPQTLM--TRTDGERVLTNLLHLSELLQQAAAELDGEQALIRHLGDHLALSGQ 742

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-- 611
                    Q + L+   +L  +    + K L      +    S    +            
Sbjct: 743  AGE----EQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDAD 798

Query: 612  ------LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                  L   E +  + +       L  L   L   +     G+ +      +      S
Sbjct: 799  GNSQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNASNSMLHRS 858

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             +           +         ++A G   +      +    PT       R       
Sbjct: 859  ALGYLLGGGVALAESAELKVWLRDLAQGCDAIAL----QPVPEPTDERFSAPRNEAALVK 914

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                  +     ++     L             P  P             ++L +D    
Sbjct: 915  LLVPKRRAAENWWIASYSALRIGDTVTAGADESPDSPQA-----------QKLFDDERLD 963

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                   L       + P   + GT  H ++     +         + L   +      +
Sbjct: 964  PEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFAVTAHAPDKLQDAVARRCNRR 1023

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV-----------NIPAKMAIESI 894
                      W +         L    ++      + +            +    A  ++
Sbjct: 1024 G------WAGWINTLSDWLQHMLNLPLRLSPDATPVALGELDQPNQYRIEMEFWFASNNV 1077

Query: 895  GIH---------------------------LTGFADRIDLLKSGFVDITDYKTG------ 921
             +                              GF D     + G   + DYK+       
Sbjct: 1078 NVAQMDALVRRFTHNNAPRAATETVSLNGMFKGFIDLTFEHE-GRYYVADYKSNWLGIDD 1136

Query: 922  -----DNPKKETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKF 969
                    +        D Q  L   AL     +++      + +    Y+ L+   
Sbjct: 1137 TAYTELAMEAAILDNRYDLQYVLYLLALHRQLKARMADYDYDQHMGGALYLFLRGSR 1193


>gi|21233616|ref|NP_639533.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
 gi|21115483|gb|AAM43415.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
          Length = 1372

 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 75/745 (10%), Positives = 163/745 (21%), Gaps = 59/745 (7%)

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            RL++ + +         G D    T +    T +       N         ++  L    
Sbjct: 508  RLLALIGDPKQAIYGFRGGDVQ--TYLAAATTAQRAPPLEHNFRSRPGVLAAIDALYAQA 565

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                  +           G     +        +            P  +      +   
Sbjct: 566  GYAEAFLTEGIAFHPVQPGTKRSDADLQRDDAAAPALTLWRAPAPPPPAKGKPKPWSAGR 625

Query: 364  ADNEREEAISIAIALRMSLDENKK-----------KSALITADRNLARRVKLELTRFGIN 412
            A      A   AI   ++   +               A++      A R++  L   GI 
Sbjct: 626  ARELCTAACVAAIRGWLAGGRDGSASINGRPVQAGDIAVLVRSHGEATRIQQALGAVGIP 685

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA---KN 469
               +    L  T  +  L +LL A+    D   +   +   L                ++
Sbjct: 686  AVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGEDAAAIAALEHDGERH 745

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                      +  +      +LV D  AT            R      +LA LL +   +
Sbjct: 746  RRWQQQALDWRERWQRGGPLALVGDLGATHGQRLLALVDGERRLTNYLQLAELLQEADTR 805

Query: 530  CITP------LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
             + P      L     N +       +   +      +  +   +  + P ++    G  
Sbjct: 806  ALGPHGLVDWLARRIANADDNDETQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIG 865

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
             +   S           +  +     ++    +T      +++        ++RLL    
Sbjct: 866  RADK-SPGRHCVVHAPPHGRQLHWNTSKWSADDTASWSTAETAWKHEQRAEDARLLYVGL 924

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG------TRHL 697
                                    M  D     A    G  A D                
Sbjct: 925  TRAEHALWIATGAFHQHERTALAPMLRDPAALQASAGAGVIALDDTAPPATLPRLPADDA 984

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
            +   + R      +   W+     L   D   +                  ++       
Sbjct: 985  VQVPAARLAQRHVVPDWWVYSFTQLANADAGSDPMASATLASSGGSDEPPASEPVSAPAE 1044

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHNII 816
                        +  +         +A +                  +   RG       
Sbjct: 1045 VEAFDPRFAGNRFGVAMHDVFERCDFAAWRNWCPGQPAPEGQAAAILEALQRG------- 1097

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFE--------KENLPPHIDIIWRHLFHKISHSFL 868
                         +   ++ +++                +P             +  + +
Sbjct: 1098 -----GYAQDELDDGLAMLTRLVGHTLTVTLPEGTCLAAVPEPQRRNEMEFHFAMRPTRV 1152

Query: 869  EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP---- 924
            +    +      +             G+ +TG  D +     G   + DYK+   P    
Sbjct: 1153 DALLALLHRFGVVTERQAFGARQRLEGL-MTGLID-LTYCADGRWYVLDYKSNRLPAYDP 1210

Query: 925  ---KKETAQKLIDPQLSLEAAALKA 946
                +  A    + Q  +   AL  
Sbjct: 1211 DALARAMAHSEYELQALIYTIALHR 1235


>gi|332297331|ref|YP_004439253.1| UvrD/REP helicase [Treponema brennaborense DSM 12168]
 gi|332180434|gb|AEE16122.1| UvrD/REP helicase [Treponema brennaborense DSM 12168]
          Length = 1299

 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 83/713 (11%), Positives = 167/713 (23%), Gaps = 118/713 (16%)

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS-----LDENKK 387
                 D    +  E+     +K   D A  E      EA+ IA  +             +
Sbjct: 557  HVCLLDKAEPEESEDSETAAEKDEIDAAAEELSAVENEALFIAKKIHELTCGPNARYRTQ 616

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
              A++    +     +  L   GI       +        + +  LL       D ++ A
Sbjct: 617  DCAVLLRSYSKQIFYEKSLREAGIPYVTENIVSFFADAPVNDILHLLRLAAYPADVLSYA 676

Query: 448  TLVKHPLAKFGFP------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
             ++  P A           E + +   N +   A +    S    +L             
Sbjct: 677  AVLASPFAGLSPSGVARCLEFHTAAGINTIPADAAQPLPFSRGADELLDEDDAAAYRSGR 736

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT-------------YKTNKNSTCGNL 548
              +        S    ++   L          L +             Y+  + +   +L
Sbjct: 737  ARYERLAARARSASVADVITGLWYDEGYRYETLWSQNTALYRELYDYLYELARQADDQSL 796

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE---------GKTLSSLFSKIIETGSCIK 599
            S++D+        Q+    +  ++P                G     +F       +   
Sbjct: 797  SLADFADDLYRLRQDGSRIDDMEIPLDRPPAVRIMSIHKSKGLQFPVVFICDTAAKAGGN 856

Query: 600  ANAIEWIDIITRLIDGETVKPKIEKSSTLFILG--TLESRLLNFDTLILGGLNEGVWPKN 657
             +      I      G+++  K      L   G    +     F  +     +  +    
Sbjct: 857  FSEAYVSRIPIVPGAGDSMVLKPPVPDALRSAGKVPCDYFTRKFRAVQNAKEHAELRRLF 916

Query: 658  TAKNPFLSRVMQSDLNL---KTAEKYIGQAAHDFEMANGTRH------------------ 696
                    + +     L     AE+ + QA   +  A                       
Sbjct: 917  YVALTRAEKEVYVSAALDLKLEAEETLEQAVVRYTAAKTAAQAENDAKKGTAALVSFGHD 976

Query: 697  -----------LIYTRSLRENNIPTIASRWLQRLLVLGGTD----FFDNLKKRGQCYLDW 741
                       ++   S      P      L+R+ +              + RG      
Sbjct: 977  AVLHNGTIIGLVLPVLSAWIGRSPHPPFFTLERIPLWNRPQSKSLLRTMHRSRGADRTKR 1036

Query: 742  TRKLDYTTK-----QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
              +     +     Q    R +P PP    P T     + + +       A    +   +
Sbjct: 1037 DVQRKAAPQYAACTQEKLLRVQPVPPDRFTPSTLGTEPMPRPLQPELFEPAADTAEWAEL 1096

Query: 797  PHF--------------KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                                    D GTL H  I  L+                 +    
Sbjct: 1097 DAVLNEFKTLADITGSDAIAFTAADFGTLAHAHIEALLTGNP-------------LGAEI 1143

Query: 843  FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAKMAI---ESIGIHL 898
                 L P    +      +++  F   E    +          P +  I         +
Sbjct: 1144 RGAATLTPRQLAVVTGAAQRMAERFAASELAAAARAAHWRESEYPFRSRIKTAAGTDAFI 1203

Query: 899  TGFADRID-------LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
             G  D +              + + D+KT  + +     + +  QL+    A 
Sbjct: 1204 EGAIDLLFTGTFPAGAQAERELFVVDFKTDTDVRP---DRHVA-QLACYRKAA 1252


>gi|116671299|ref|YP_832232.1| UvrD/REP helicase [Arthrobacter sp. FB24]
 gi|116611408|gb|ABK04132.1| ATP-dependent DNA helicase, Rep family [Arthrobacter sp. FB24]
          Length = 726

 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 65/606 (10%), Positives = 144/606 (23%), Gaps = 74/606 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T RA  E+RS   ++           ++                        
Sbjct: 80  QRLLAVTFTARAAAEMRSRLRDLGVGNV----QARTFHAAA------------------- 116

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                  L +L   W   +   + +L  +    +    A  + L+ + A I D+      
Sbjct: 117 -------LRQLQFFWPQAVGGALPNLL-DHKAQMIAEAARRLRLSTDRASIRDLASE--I 166

Query: 165 KWEDLHALKNEKYGMWWLLA-------ADFLKIASKYWTERLVELNASSPVGYQI----- 212
           +W  +  L    Y                 +    + + +   + N        +     
Sbjct: 167 EWAKVSMLTPANYLENAQDRGNPGGFDLTAVARVFQSYEDVKTDRNVIDFEDVLLITVGI 226

Query: 213 ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                +    ++      ++       P   RL+       +   V+   D       + 
Sbjct: 227 LQEDPKVAATVREQYRHFVVDEYQDVSPLQQRLLELWLGGRDELCVV--GDASQTIYSFT 284

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             + K      +      +P  ++ KL+       + VK   ++         V   ++ 
Sbjct: 285 GASPKHLLGFKAM-----YPGANVVKLIRDYRSTPQVVKLANDLLAGRRSGGPVADAAWA 339

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSA 390
            P     +                      E  ++  EA ++AI +R  LD      + A
Sbjct: 340 APLKLVAQRPPGPPP------------QFTECADDEAEAATVAIKIRELLDAGTPASEIA 387

Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
           ++      +   +  L   GI   +  G                            A   
Sbjct: 388 VLFRTNGQSEAYEQALASAGIGYQLRGGERFFARKEVRDAIL-------QLRAATRAAAE 440

Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT-QKNNTHVPHWQ 509
                + G   + +  +    E     G         L +LV                  
Sbjct: 441 TSEPERLGQLVRDIVASLGYTESAPHNGGALRERWESLAALVALADELVLSRGPQFSLSD 500

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
                +++ LA          +  L   K  +      + + +             +DE 
Sbjct: 501 FVNELQERSLAQHAPTVQGVTLASLHAAKGLEWDAVFLVGLCEGLMPISFADSPEDVDEE 560

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
           R+L  +      + LS  +S     G         ++D +       +       +    
Sbjct: 561 RRLLYVGITRAREHLSLSWSLARTPGGRANRKPSRFLDGLRPDSVASSTARGKGPAPRRK 620

Query: 630 ILGTLE 635
                 
Sbjct: 621 AATPAM 626


>gi|320095787|ref|ZP_08027432.1| hypothetical protein HMPREF9005_2044 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977294|gb|EFW08992.1| hypothetical protein HMPREF9005_2044 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 482

 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/316 (10%), Positives = 76/316 (24%), Gaps = 18/316 (5%)

Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
             +  +I+ +    P  +P            L ++           + L A         
Sbjct: 111 QAIARLIESVPAPWPDQIPAQMRAMPAFRAELRNLFARAGEAGMDGDALIAAGERFGQGQ 170

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-EAEHLMKGTKGPIIIAGSTGSI 239
           W+ A   L+              A      +I  + A       +      +   S    
Sbjct: 171 WVAAGHLLRELLDASVTGAECPGALRVDLSRIQALAADLVGSWERDGAAAGV---SAPPP 227

Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
                ++  + +     I L G       +         ++   +   Y     +   +L
Sbjct: 228 VPDVVVVDDLQDCTPSTITLLGAC-----SAAGARVVALSDSDVAVAGYRGGEPHLDLRL 282

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
              L    +++ R+   S  +       +        S             +       +
Sbjct: 283 ASLLGAGIDELDRVHGPSPRIRALVAEAASRVTQSGPSAR------RRAGADGDDAERPL 336

Query: 360 ALIEADNEREEAISIAIALRMSLDEN---KKKSALITADRNLARRVKLELTRFGINIDIS 416
               A    +    IA  LR     +        +I    ++   ++  L+R G+ +   
Sbjct: 337 RTHLAATPAQMGALIARELRAHRLHDAVAWSDQVVIVRSASMVDEMRRHLSRGGVPVAGG 396

Query: 417 AGIPLSTTLHSSILTS 432
                  +   + L  
Sbjct: 397 GRAFDFASQPVTRLML 412


>gi|295676242|ref|YP_003604766.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1002]
 gi|295436085|gb|ADG15255.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1002]
          Length = 1243

 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/784 (7%), Positives = 171/784 (21%), Gaps = 85/784 (10%)

Query: 210  YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
            Y+           ++      +I     + P    + S +        +    D      
Sbjct: 374  YRALAAHPWLADALRSRYPAALIDEFQDTDPLQFAIFSRIFAPAG--PLFLVGDPKQAIY 431

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             +      +      + +       +       +D      +               +  
Sbjct: 432  SFRAADLHTYLAARESASACYTLAVNQRSTAPIVDACNRIFEANPQAFVLDGLDYQPVRA 491

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA--ISIAIALRMSLD---- 383
                       +    + +I  + +  + ++  +A     EA    I   LR + +    
Sbjct: 492  GERRRAPFADPDASGGDFRIWTLPRGETALSKRDAQRAASEACAAEIVRLLRGAREGVVT 551

Query: 384  -----ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                       A++         VK  L  +G+     A   +  TL +  +  +L AI 
Sbjct: 552  IGDKPLAPGDIAVLVQTHKQGSLVKRVLAAWGVGSVELAQASVFATLDAEQIERVLAAID 611

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
               D   +   +            +              G  +S   +D    +      
Sbjct: 612  TPGDLRRLRAALATDWLGLDAAALWRLTQVADAPAAETGGVADSTSALDPADAMGWVERF 671

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
             +           +        + +   ++  +          +      + +       
Sbjct: 672  SRYRMLWHERGFAVMWRTLMRELRVAQRLVAGVDGERRLTNVNHLAELVQTRAATQPGIA 731

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              L+ +              EE +        +++  +  K+  +E+  +    ++   +
Sbjct: 732  PTLRWLAA-----QREQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGL 786

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
            +          +    E    + D ++  G +E    + +          ++ L      
Sbjct: 787  REPPSSG----LPDAREYHDDSGDAVLHYGCDEQEAERASRYAVREQAAERARLVYVALT 842

Query: 679  KYIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
            + + +       +    +           L   +  T  +   +          +  L  
Sbjct: 843  RAVYRCYLVAGTYLSSRSTKESRRSVLNWLVGGSGHTFDAWLAEPPDEAALAASWHALAG 902

Query: 734  RGQCYLDWTRKLDY-----------------------------------------TTKQP 752
                                                                        
Sbjct: 903  GPVTLRALPEVTRRVPLETLQDHGAHLRARANRRALRDQWRMASFSGLIAAGSRSADAHA 962

Query: 753  HYKRPKPFPPLEAQPR---------TYSFSEIKQLINDPYAVY---ARRILKLDFIPHFK 800
            H  +    P  +               + +      +D    +   A     L  +    
Sbjct: 963  HAPQEDLRPDHDEIADALQSAPLLVPLAATNAPAHADDDILAFPRGAAAGDCLHRMFELA 1022

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
               D           + E       +    +  +M ++I      E +P           
Sbjct: 1023 DFSDARSWPDAIRGALRERPAPAAPELAARLPAMMHRLIADVVSTELVPGMTLARLDPRR 1082

Query: 861  H-KISHSFLEHEEKIQSSIEKIFVNIPA-KMAIESIGIH--LTGFADRIDLLKSGFVDIT 916
                             ++ ++ +      +A+E   +   + GF D I     G   I 
Sbjct: 1083 RLNELEFLFAAPSLDFPALRELLIEYGYPDVALEPGVLRGYVKGFIDMIVEH-DGRFWIV 1141

Query: 917  DYKT 920
            D+K+
Sbjct: 1142 DWKS 1145


>gi|73544167|ref|XP_847978.1| kinetoplast-associated protein-like protein [Leishmania major
           strain Friedlin]
 gi|321438332|emb|CBZ12084.1| kinetoplast-associated protein-like protein [Leishmania major
           strain Friedlin]
          Length = 729

 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 51/671 (7%), Positives = 131/671 (19%), Gaps = 9/671 (1%)

Query: 111 ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
           E ARL            +        +     A     A+  A      E   +   +  
Sbjct: 61  EAARLQAEAEEAARQQAEAEEAARLQAEAEEAARLQAEAEEAARQQAEAEEAARLQAEAE 120

Query: 171 ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
                +               +        E         + A  +AEAE   +      
Sbjct: 121 EAARLQAEAEEAARLQAEAEEAARLQAEAEEAARQQAEAEEAARQQAEAEEAARLQAEAE 180

Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA--IWNTITEKSTNITSSNTTY 288
             A         ARL +                     A        E            
Sbjct: 181 EAARLQAEAEEAARLQAEAEEAARQQAEAEEAARQQAEAEEAARLQAEAEEAARLQAEAE 240

Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
               Q + A+    L  + E+  RL   + E         ++      ++       E +
Sbjct: 241 EAARQQAEAEEAARLQAEAEEAARLQAEAEEAARLQAEAEEAARQQAEAEEAARQQAEAE 300

Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
                +  ++    EA   + EA   A     + +  ++++    A+    ++ + E   
Sbjct: 301 EAARLQAEAE----EAARLQAEAEEAARQQAEAEEAARQQAE---AEEAARQQAEAEEAA 353

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
                   A    +    ++ L +      +       A  ++    +    +     A 
Sbjct: 354 RLQAEAEEAARLQAEAEEAARLQAEAEEAARQQAEAEEAARLQAEAEEAARQQAEAEEAA 413

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                        +      +       A ++        + +   E+        +   
Sbjct: 414 RLQAEAEEAARLQAEAEEAARLQAEAEEAARQQAEAEEAARQQAEAEEAARLQAEAEEAA 473

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
           +           +        +    +               +        +        
Sbjct: 474 RLQAEAEEAARQQAEAEEAARLQAEAEEAARLQAEAEEAARLQAEAEEAARQQAEAEEAA 533

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            +  E     +  A        +    E  + + E      +    E             
Sbjct: 534 RQQAEAEEAARQQAEAEEAARLQAEAEEAARLQAEAEEAARLQAEAEEAARLQAEAEEAA 593

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
             +    +   +        +     + A +   +A                ++  E   
Sbjct: 594 RLQAEAEEAARQQAEAEEAARLQAEAEEAARQQAEAEEAARQQAEAEEAARLQAEAEEAA 653

Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
              A             +      +  +         +    Q   +          +  
Sbjct: 654 RQQAEAEEAARQQAEAEEAARQQAEAEEAARQQAEAEEAARLQAEAEEAARQQAEAEEAA 713

Query: 769 TYSFSEIKQLI 779
                  +   
Sbjct: 714 RLQAEAEEAAR 724



 Score = 43.8 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 48/676 (7%), Positives = 139/676 (20%), Gaps = 12/676 (1%)

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI---ASKYW 195
           P S A+    A+  A +    E   ++  +       +                   +  
Sbjct: 49  PKSTAHLQAEAEEAARLQAEAEEAARQQAEAEEAARLQAEAEEAARLQAEAEEAARQQAE 108

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
            E    L A +    ++     EA  L    +    +                 A     
Sbjct: 109 AEEAARLQAEAEEAARLQAEAEEAARLQAEAEEAARLQAEAEEAARQQAEAEEAARQQAE 168

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
           A     L      A       +      +    +   Q    +         E  +    
Sbjct: 169 AEEAARLQAEAEEAARLQAEAEEAARLQAEAEEAARQQAEAEEAARQQAEAEEAARLQAE 228

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                  ++     +    +  +         +   +Q         EA   + EA   A
Sbjct: 229 AEEAARLQAEAEEAARQQAEAEEAARLQAEAEEAARLQAEAE-----EAARLQAEAEEAA 283

Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
                + +  ++++     +    +    E  R     + +A         +        
Sbjct: 284 RQQAEAEEAARQQAE--AEEAARLQAEAEEAARLQAEAEEAARQQAEAEEAARQQAEAEE 341

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
           A  +  +    A L            +    A+   E       +   +         + 
Sbjct: 342 AARQQAEAEEAARLQAEAEEAARLQAEAEEAARLQAEAEEAARQQAEAEEAARLQAEAEE 401

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            A Q+            +EE   L     +            +    +       ++  +
Sbjct: 402 AARQQAEAEEAARLQAEAEEAARLQAEAEEAARLQAEAEEAARQQAEAEEAARQQAEAEE 461

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                 +       +        ++ +   +   +     +       E    +    + 
Sbjct: 462 AARLQAEAEEAARLQAEAEEAARQQAEAEEAARLQAEAEEAARLQAEAEEAARLQAEAEE 521

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +    + +        E+     +      L          +              +
Sbjct: 522 AARQQAEAEEAARQQAEAEEAARQQAEAEEAARLQAEAEEAARLQAEAEEAARLQAEAEE 581

Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            A   +   A +             +         + +   +        +     +   
Sbjct: 582 AAR--LQAEAEEAARLQAEAEEAARQQAEAEEAARLQAEAEEAARQQAEAEEAARQQAEA 639

Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
           +       + +   +Q            EA+      +E ++             L+ + 
Sbjct: 640 EEAARLQAEAEEAARQQAEAEEAARQQAEAEEAARQQAEAEEAARQQAEAEEAARLQAEA 699

Query: 796 IPHFKKDPDRTDRGTL 811
               ++  +  +   L
Sbjct: 700 EEAARQQAEAEEAARL 715



 Score = 41.8 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 39/495 (7%), Positives = 96/495 (19%), Gaps = 3/495 (0%)

Query: 111 ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
           E ARL            +        +     A     A+  A +    E   ++  +  
Sbjct: 231 EAARLQAEAEEAARQQAEAEEAARLQAEAEEAARLQAEAEEAARLQAEAEEAARQQAEAE 290

Query: 171 ALKNEKYGMWWLLAADFLKIASKYWTERLVE---LNASSPVGYQIALMRAEAEHLMKGTK 227
               ++               +        E     A +    +      EA       +
Sbjct: 291 EAARQQAEAEEAARLQAEAEEAARLQAEAEEAARQQAEAEEAARQQAEAEEAARQQAEAE 350

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
               +                 A     A            A       +      +   
Sbjct: 351 EAARLQAEAEEAARLQAEAEEAARLQAEAEEAARQQAEAEEAARLQAEAEEAARQQAEAE 410

Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
            +   Q    +         E  +           ++     +    +  +         
Sbjct: 411 EAARLQAEAEEAARLQAEAEEAARLQAEAEEAARQQAEAEEAARQQAEAEEAARLQAEAE 470

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELT 407
           +   +Q    + A  +A+ E    +         L    +++A + A+   A R + E  
Sbjct: 471 EAARLQAEAEEAARQQAEAEEAARLQAEAEEAARLQAEAEEAARLQAEAEEAARQQAEAE 530

Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
                   +                   A              +                
Sbjct: 531 EAARQQAEAEEAARQQAEAEEAARLQAEAEEAARLQAEAEEAARLQAEAEEAARLQAEAE 590

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
           + A                +  + +                 +R   E +E A L  +  
Sbjct: 591 EAARLQAEAEEAARQQAEAEEAARLQAEAEEAARQQAEAEEAARQQAEAEEAARLQAEAE 650

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                     +  +       +     +      Q    +E  +L     E   +   + 
Sbjct: 651 EAARQQAEAEEAARQQAEAEEAARQQAEAEEAARQQAEAEEAARLQAEAEEAARQQAEAE 710

Query: 588 FSKIIETGSCIKANA 602
            +  ++  +   A  
Sbjct: 711 EAARLQAEAEEAARL 725


>gi|126308691|ref|XP_001377293.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 2677

 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/561 (8%), Positives = 109/561 (19%), Gaps = 36/561 (6%)

Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           +  + +      + PI +A    +     R      +          L            
Sbjct: 398 LARDPQAPTSQDRAPISLARDPRAPTCLDRDPRAPTHLARDLQAPTHLARDPRALTHLDR 457

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             ++    + +    TH    L +    L    +    L          +          
Sbjct: 458 DPQAPTPLARDPQAPTH----LDRAPTSLVRDPQAPTSLDRDPQAPTHLAKHHQAPTHLA 513

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
                      +++ P             A + +            +      ++ +   
Sbjct: 514 KHHQAPTHLAKDHQAPTHLAKDPQAPTHLAKDHQAPIRLARDPQAPTHLAKDHQAPI--- 570

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                      L R           P + T  +    +  +          +A   + P 
Sbjct: 571 ----------RLARDPRAPTHLDRDPRAPTPLARDPQAPTHLAKHHQAPTHLARDPRAPT 620

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                P     +A++     +             +      +A         +       
Sbjct: 621 CLARDPRAPTHQARDPQAPTSQGREPQVPTSQAPEPQAPMHLAKDPQALTRLN------- 673

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                A   +D   +  TPL            +                +  D       
Sbjct: 674 -RDPRAPTHLDRDPRAPTPLARDPQAPTHLAKHHQAPTHLARDPRAPTCLARDPRAPTHQ 732

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
               +   +               +A +     +         +  + +  S+L +    
Sbjct: 733 ARDPQAPTSQGREPQVPTSQAPEPQAPSS----LDLEPQAPNHLDQEPQAPSSLDLEPQA 788

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            + L            E   P +  + P     +  +L   ++     QA    +     
Sbjct: 789 PNHLDQGPQAPSSLDQEPQAPSSLDQEPQAPSHLDPELQEPSSLDQEPQAPSHLDQEPQA 848

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                      +  P   S   Q        D                  LD   + P  
Sbjct: 849 P-------SSLDQEPQEPSSLDQEPQEPSSLDQEPQEPSSLDLEPQAPSHLDLEPQAPTS 901

Query: 755 KRPKPFPPLEAQPRTYSFSEI 775
              +P           + S +
Sbjct: 902 LDLEPQALSNLDQEPQAPSSL 922


>gi|168703847|ref|ZP_02736124.1| hypothetical protein GobsU_30220 [Gemmata obscuriglobus UQM 2246]
          Length = 2974

 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 78/793 (9%), Positives = 191/793 (24%), Gaps = 58/793 (7%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P + F R +   L     V+  R               +P+      +          K+
Sbjct: 1296 PDADFARALARELEGRAKVQFLRAP-------------LPS------VTDAKKRAAEGKA 1336

Query: 73   TILPI-IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            T     + +L     +++         L         +  L    L+   +  ++ + L 
Sbjct: 1337 TFDDRAVLTLHFAATQQWDRAATHLQELEKLAPRKVGVRWLKDAFLLAARRHEELRQRLL 1396

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
             E+   +     +       LA+ +     +  + ++  AL +    ++    A    + 
Sbjct: 1397 AEAAALVATDDPDTRANDYALAEHLISTAVQMLQADERLALNDRLLKVYERQPAHLGAV- 1455

Query: 192  SKYWTER----LVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLM 246
             K W  R    L E   +         +  +           + ++AGS     A A L 
Sbjct: 1456 -KSWRNRRLGLLEETRQADQARVLAKEIATDYPRDHSAQYRYVQMLAGSGDYAAAYAWLD 1514

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY---STHPQYSLAKLLDFL 303
              +A  P      P  +  +     + + ++      ++         P+          
Sbjct: 1515 RVLA--PEVKWDHPQYEYTLREQYAHLLRQQGRYRDLADYLGAWVEGSPESESPYARYLS 1572

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS----------DMRNTDILENKIPNIQ 353
             +               + R         P   +             +            
Sbjct: 1573 ALVWSSRSERAEALTAQWMREAQKEGELPPAVAARLGAAVNFALGRGHELSTNRPDERWN 1632

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
               ++VA      + +  +  +I             AL         R    L+   ++ 
Sbjct: 1633 APLAEVATFFVRRDDQLGLVASILNLSRFGSTDTGRALRKQFAEKFVRSIDALSLARVSF 1692

Query: 414  DISAGIPLSTT------LHSSILTSLLNAIFKLNDFMAI---ATLVKHPLAKFGFPEKYL 464
             +   +P + T        ++ L     A  + +    I          L   G  +   
Sbjct: 1693 LLDYLLPHADTDGATWQAVAAALRKRWEAEKEPHRKHQIGQQVARALTALEGGGLLDFRR 1752

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
             + + A E    R  +  +D +  +           +           +         L 
Sbjct: 1753 RQLETAAEGYRSRYAQQLFDALLERDWTPAAEDELFSLLDTLSDGDEPAGVLFTKVAALH 1812

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
                                   L  ++  K      +        +L     ++     
Sbjct: 1813 RLTDVITEHRFRALMKAVEKPEQLPRTELLKKQEEARKAARTGFADRLRKEAAKQPKPFA 1872

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
              + ++ +     +  +     D    ++     K     +    +   L+  L     +
Sbjct: 1873 DWITAERVWLDVQLDRDLKSAADDCWAIVARPVTKRTPHPAEGNNLAAMLDEMLHARAVV 1932

Query: 645  ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
             L  L              +  V +   +   A ++ G+    +   + +  L     +R
Sbjct: 1933 TLEHLAARKGADPALVERLVKYVDRQTADAPDAPRWRGEKYRLYIALDRSNELEA-ELVR 1991

Query: 705  ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
                P   +RW   L  L         + +    +     ++   + P            
Sbjct: 1992 WTTGPESENRWRLALGYLLAE------RGKVADAIRQLEAVERADELPASAHRSLIEWYT 2045

Query: 765  AQPRTYSFSEIKQ 777
            A+ R       + 
Sbjct: 2046 AENRRADADRART 2058



 Score = 43.4 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 68/792 (8%), Positives = 170/792 (21%), Gaps = 59/792 (7%)

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
             V +      LAR +                                   L       + 
Sbjct: 1294 AVPDADFARALARELEGRAKVQFLRAPLPSVTDAKKRAAEGKATFDDRAVLTLHFAATQQ 1353

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA---------SSPVGYQI 212
             ++    L  L+        +       + +    E L +              P     
Sbjct: 1354 WDRAATHLQELEKLAPRKVGVRWLKDAFLLAARRHEELRQRLLAEAAALVATDDPDTRAN 1413

Query: 213  ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
                A AEHL+      +             ++      H             +      
Sbjct: 1414 DY--ALAEHLISTAVQMLQADERLALNDRLLKVYERQPAHLGAVKSWRNRRLGLLEETRQ 1471

Query: 273  TITEKSTNITSSNTTYSTH-PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                +      +      H  QY   ++L            L  V            +  
Sbjct: 1472 ADQARVLAKEIATDYPRDHSAQYRYVQMLAGSGDYAAAYAWLDRVLAPEVKWDHPQYEYT 1531

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSD------------VALIEADNEREEAISI-AIAL 378
            L    + +         + +    + +            ++ +   +  E A ++ A  +
Sbjct: 1532 LREQYAHLLRQQGRYRDLADYLGAWVEGSPESESPYARYLSALVWSSRSERAEALTAQWM 1591

Query: 379  RMSLDENKKKSALITADRNLARRVK---LELTRFGINIDISAGIPLSTTLHSS----ILT 431
            R +  E +   A+                EL+    +   +A +    T        +  
Sbjct: 1592 REAQKEGELPPAVAARLGAAVNFALGRGHELSTNRPDERWNAPLAEVATFFVRRDDQLGL 1651

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN---ALELVALRGNKNSYDIMDL 488
                              ++   A+                 L+ +    + +      +
Sbjct: 1652 VASILNLSRFGSTDTGRALRKQFAEKFVRSIDALSLARVSFLLDYLLPHADTDGATWQAV 1711

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
             + +  R   +K          +++      A+     +      L T      S     
Sbjct: 1712 AAALRKRWEAEKEPHRKHQIGQQVARALT--ALEGGGLLDFRRRQLETAAEGYRSRYAQQ 1769

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK--ANAIEWI 606
                  +            E      L    +G   + +    +     +        + 
Sbjct: 1770 LFDALLER-----DWTPAAEDELFSLLDTLSDGDEPAGVLFTKVAALHRLTDVITEHRFR 1824

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             ++  +   E +               L+ +         G  +           PF   
Sbjct: 1825 ALMKAVEKPEQLPR----------TELLKKQEEARKAARTGFADRLRKEAAKQPKPFADW 1874

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
            +    + L        ++A D   A   R +  T+           +  L  +L      
Sbjct: 1875 ITAERVWLDVQLDRDLKSAADDCWAIVARPV--TKRTPHPAEGNNLAAMLDEMLHARAVV 1932

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP-KPFPPLEAQPRTYSFSEIKQLINDPYAV 785
              ++L  R         +L     +     P  P    E      +     +L  +    
Sbjct: 1933 TLEHLAARKGADPALVERLVKYVDRQTADAPDAPRWRGEKYRLYIALDRSNELEAELVRW 1992

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                  +  +           +RG +   I      +R ++     +  + +   +   +
Sbjct: 1993 TTGPESENRWRLALGYLL--AERGKVADAIRQLEAVERADELPASAHRSLIEWYTAENRR 2050

Query: 846  ENLPPHIDIIWR 857
             +       +++
Sbjct: 2051 ADADRARTAVYQ 2062


>gi|108758103|ref|YP_630213.1| hypothetical protein MXAN_1978 [Myxococcus xanthus DK 1622]
 gi|108461983|gb|ABF87168.1| hypothetical protein MXAN_1978 [Myxococcus xanthus DK 1622]
          Length = 327

 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 68/247 (27%), Gaps = 44/247 (17%)

Query: 809  GTLFHNIITEL---IKKRINKNTPEINHLMKQIIDSHFE--------------------- 844
            G++ H  I ++    +     +   +    ++++   F                      
Sbjct: 67   GSVVHESIKDVLLDWRAGREVDPAAVEARTRKLMQDDFRHSRSKNYWSQKYRKQFTGLVE 126

Query: 845  ---KENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKI-FVNIPAKMAIES---IGI 896
                E +P                 F     K  + S++   ++ + A          G+
Sbjct: 127  HEYAEAVPDEAWKQNWETVRSALSWFFSSRWKDLAHSLKPEQWLEVDAGFDFAHFTLDGL 186

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA-ALKAGSFSQIDCR 955
             +    D   +   G   + D+KTG +      +   D Q+   A    +   F      
Sbjct: 187  KVFAIPDFAFVDADGTPVVVDWKTGKS------RDGYDEQVLGYALYVAQRYRF----PV 236

Query: 956  KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015
            +      + L +  + D   + +   S     E+S+  +  ++        P  +     
Sbjct: 237  EKVRASLVYLNEGKEQDVAVDPEAMASFHRHFEQSVAKMRSLLKD-AATNTPLDASAFPP 295

Query: 1016 EKSNIQS 1022
             +S    
Sbjct: 296  TESLTSC 302


>gi|66770581|ref|YP_245343.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            campestris str. 8004]
 gi|66575913|gb|AAY51323.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            campestris str. 8004]
          Length = 1372

 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 76/741 (10%), Positives = 165/741 (22%), Gaps = 51/741 (6%)

Query: 244  RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            RL++ + +         G D    T +    T +       N         ++  L    
Sbjct: 508  RLLALIGDPKQAIYGFRGGDVQ--TYLAAATTAQRAPPLEHNFRSRPGVLAAIDALYAQA 565

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                  +           G     +        +            P  +      +   
Sbjct: 566  GYAEAFLTEGIAFHPVQPGTKRSDADLQRDDAAAPALTLWRAPAPPPPAKGKPKPWSAGR 625

Query: 364  ADNEREEAISIAIALRMSLDENKK-----------KSALITADRNLARRVKLELTRFGIN 412
            A      A   AI   ++   +               A++      A R++  L   GI 
Sbjct: 626  ARELCTAACVAAIRGWLAGGRDGSASINGRPVQAGDIAVLVRSHGEATRIQQALGAVGIP 685

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA---KN 469
               +    L  T  +  L +LL A+    D   +   +   L                ++
Sbjct: 686  AVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGEDAAAIAALEHDGERH 745

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                      +  +      +LV D  AT            R      +LA LL +   +
Sbjct: 746  RRWQQQALDWRERWQRGGPLALVGDLGATHGQRLLALVDGERRLTNYLQLAELLQEADTR 805

Query: 530  CITP------LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
             + P      L     N +       +   +      +  +   +  + P ++    G  
Sbjct: 806  ALGPHGLVDWLARRIANADDNDETQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIG 865

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
             +   S           +  +     ++    +T      +++        ++RLL    
Sbjct: 866  RADK-SPGRHCVVHAPPHGRQLHWNTSKWSADDTASWSTAETAWKHEQRAEDARLLYVGL 924

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG------TRHL 697
                                    M  D     A    G  A D                
Sbjct: 925  TRAEHALWIATGAFHQHERTALAPMLRDPAALQASAGAGVIALDDTAPPATLPRLPADDA 984

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
            +   + R      +   W+     L   D   +                  ++       
Sbjct: 985  VQVPAARLAQRHVVPDWWVYSFTQLANADAGSDPMASATLASSGGSDEPPASEPVSAPAE 1044

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHNII 816
                        +  +         +A +                  +   RG       
Sbjct: 1045 VEAFDPRFAGNRFGVAMHDVFERCDFAAWRNWCPGQPAPEGQAAAILEALQRG------- 1097

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEK----ENLPPHIDIIWRHLFHKISHSFLEHEE 872
                +  ++     +  L+   +     +      +P             +  + ++   
Sbjct: 1098 -GYAQDELDDGLAMLTRLVGHTLTVTLPEGTCLAAVPEPQRRNEMEFHFAMRPTRVDALL 1156

Query: 873  KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-------K 925
             +      +             G+ +TG  D +     G   + DYK+   P        
Sbjct: 1157 ALLHRFGVVTERQAFGARQRLEGL-MTGLID-LTYCADGRWYVLDYKSNRLPAYDPDALA 1214

Query: 926  KETAQKLIDPQLSLEAAALKA 946
            +  A    + Q  +   AL  
Sbjct: 1215 RAMAHSEYELQALIYTIALHR 1235


>gi|326443259|ref|ZP_08217993.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 707

 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 60/695 (8%), Positives = 142/695 (20%), Gaps = 91/695 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           ASV     T RA  E+R    ++           ++                        
Sbjct: 50  ASVLAVTFTNRAAGEMRGRLRQLGAGGV----QARTFHSAA------------------- 86

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN--AIWLAKNLADIIDIIETE 162
                  L +L   W   +   +  L       +  S A          L D      T 
Sbjct: 87  -------LRQLQYFWPRAVGGEVPRLLERKIQLVAESAARCRFRLDRNELRD-----ATS 134

Query: 163 EKKWEDLHALKNEKYGMWWLLAADF-------LKIASKYWTERLVELNASSPVGYQIALM 215
           E +W  +       Y      +          +      + +   +          +  +
Sbjct: 135 EIEWAKVTQTVPADYPAAVAKSLRDAPRDPAEISQIYAMYEQLKRDRAVIDFEDVLLLTV 194

Query: 216 RAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
               +       ++      ++       P   RL+       +   V+   D       
Sbjct: 195 GILQDRPDIADQIRRQYQHFVVDEYQDVSPLQQRLLELWLGDRDSLCVV--GDASQTIYS 252

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
           +   T        +      HP  ++ KL+       + V     + ++  GR+      
Sbjct: 253 FTGATPDHLLSFRTR-----HPSATVVKLVRDYRSTPQVVHLANGLLSQARGRAA----- 302

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKK 388
                            ++ + ++   + +  E  +E  EA   A  +R  +D      +
Sbjct: 303 -------------EHRLELVSQRESGPEPSYEEYPDEPAEAEGTARRIRELIDTGVPAGE 349

Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            A++      +   +  L   G+   +                  L    +     ++  
Sbjct: 350 IAVLYRVNAQSEVYEQALADAGVPYQLRGAERFFERQEVREAGVALRGAARAGGNDSLLD 409

Query: 449 ------------LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                       L     +          R +       +R  ++        +L     
Sbjct: 410 SADDLPGQVRAVLSTQGWSTEPPAGSGAVRDRWESLAALVRLAEDFARARSGATLADLVA 469

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
              +          +        A   ++     +  L            +  I +  + 
Sbjct: 470 ELDERAAAQHAPTVQGVTLASMHAAKGLEWDAVFVVGLTEGMMPITYAKTDEQIEE-ERR 528

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +                L     G+        +        A              G 
Sbjct: 529 LLYVGVTRARFHLSLSWALSRSPGGRASRRPTRFLNGLRPGSAAAGPRGTAGAGGAERGS 588

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
             K +      +   G   +       +        +      +           L    
Sbjct: 589 RRKRRGPALCRV--CGKTLTDAGEMKLMRCEDCPSDMDEGLYERLREWRSAQARGLGQPA 646

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
              +  +       A        +R          
Sbjct: 647 YCVFTDKTLIAIAEAVPADEAELSRISGVGGRKLE 681


>gi|294502082|ref|YP_003566147.1| hypothetical protein PSR_56013 [Salinibacter ruber M8]
 gi|294342066|emb|CBH22731.1| conserved hypothetical protein [Salinibacter ruber M8]
          Length = 294

 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 65/269 (24%), Gaps = 43/269 (15%)

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILK----LDFIPHFKKDPDRTDRGTLFHNIITELI 820
             +   +S   ++   + P     R I             +++  R +RG  FH ++ +  
Sbjct: 22   PEDFQFSQGSLQDFDDCPRRFLLRHIEGRPYPAPEAEPIRENERRKERGVRFHELLCQEH 81

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
                                    ++        +W          ++    +      +
Sbjct: 82   SGVP---------------REAVRRQASGDEKLEVWW-------DQYV--HREPVGETNR 117

Query: 881  IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940
             +  I  +  +   G  L    D I     G  +I D+KT         Q     Q  + 
Sbjct: 118  TYAEISLEGEVA--GYPLIATYDLIAERPGGTFEIFDWKTARYKPDR-GQLASRLQTKVY 174

Query: 941  AAALKAGSFSQIDCRKVAN-----LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
               L     + +   +        + Y   +     +           DE      ++L 
Sbjct: 175  PYLLAQAG-AGLTGGEPPRPEQIKMTYWFAEHPDNPETFEYSDYNAEVDE------EDLQ 227

Query: 996  EIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024
            + V  +    +                 Y
Sbjct: 228  DQVGKILARTERAHFEKTEDRTHCKFCTY 256


>gi|83589346|ref|YP_429355.1| DNA helicase/exodeoxyribonuclease V, subunit A [Moorella
            thermoacetica ATCC 39073]
 gi|123525008|sp|Q2RL77|ADDA_MOOTA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|83572260|gb|ABC18812.1| DNA helicase/exodeoxyribonuclease V, subunit A [Moorella
            thermoacetica ATCC 39073]
          Length = 1405

 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 55/535 (10%), Positives = 115/535 (21%), Gaps = 69/535 (12%)

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
              +       L  +        D      L ++                    +V + G 
Sbjct: 868  GFARHGLFRFLRFIERLQQNEGDLGTARALGENEDVVRVMS--IHRAKGLEFPVVIVAGL 925

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
               +++ DL    L          ++             LA      +      L     
Sbjct: 926  GKGFNLRDLSGDFLLHGRLGLVPLYLDAAAGIKYPTLPYLATGHRLRLEALSEELRILYV 985

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDE-------------HRKLPNLWFEEEGKTLSS 586
                    L ++   +      +N C                    P  W          
Sbjct: 986  ALTRAREKLILAGTVRDLPRQAENWCASLFLPGEQLPPVLTSRAGNPLDWLLPALARHPD 1045

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN-FDTLI 645
              +     G        +       ++ G  +  +  +   + +  T   +         
Sbjct: 1046 AAAIRDLAGVGGGHLLPDPSSWQVEVVRGGELPDRGSEEPGVQVRVTAGYQGTESAGQQE 1105

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
              GL    WP  + +       +Q       A                        +   
Sbjct: 1106 NPGLLCSGWPGGSRELAGAVTPVQETAGKTVAPPGSNI------------------AEAG 1147

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                              G  +      R   +    + L     +      K    +  
Sbjct: 1148 VEPGVSPPAGAVSPQDETGPTWLQQEVARRLAWTYPRQPLTALPVKLTVTDLKRRFDVFN 1207

Query: 766  QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
            +  T            P                  +     +RGT  H ++  +     +
Sbjct: 1208 EGETPLRPGENTFTRRP------------AFLQSHQGLTAAERGTATHLVLQHV-----D 1250

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVN 884
             + P     +  ++    E+E L P            I   F     K   +  E++   
Sbjct: 1251 LSRPVTGESLAGLLQEMVEREILTPEQAA--AVDIRAIVTFFAAPLGKRLLARWEQVKRE 1308

Query: 885  IPAKMAIESIG--------------IHLTGFADRIDLLKSGFVDITDYKTGDNPK 925
            +P  +A+ ++               I + G  D +   + G   + D+KTG  P 
Sbjct: 1309 LPFSLAVPAVELYPGLPAEAAAGEIILVQGIIDCLVEEEDG-FLLLDFKTGRIPP 1362


>gi|209521655|ref|ZP_03270348.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. H160]
 gi|209497914|gb|EDZ98076.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. H160]
          Length = 1239

 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 85/811 (10%), Positives = 181/811 (22%), Gaps = 70/811 (8%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPI 230
            +   W  L   +L  A      R       S       L RA A H      ++      
Sbjct: 335  QRSRWLALVQSWLDYAPAELVARKRTRRVVSFDDLLANLYRALAAHAWLADALRSRYPAA 394

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            +I     + P    + S +        +    D       +      +      + +   
Sbjct: 395  LIDEFQDTDPLQFAIFSRIFAPAG--PLFLVGDPKQAIYSFRAADLHTYLAARESASACY 452

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
                +       +D      +               +             +    + +I 
Sbjct: 453  TLAVNQRSTAPIVDACNRVFEANPQAFVLDGLDYQPVRAGERRRAPFADPDASGGDFRIW 512

Query: 351  NIQKCFSDVALIEADNEREEA--ISIAIALRMSLD---------ENKKKSALITADRNLA 399
             + +  + ++  +A     EA    I   LR + +               A++       
Sbjct: 513  TLPQGEAALSKRDAQRAASEACAAEIVRLLRGAREGVVTIGDKPLAPGDIAVLVQTHKQG 572

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
              VK  L  +G+     A   +  TL +  +  +L AI    D   +   +         
Sbjct: 573  SLVKRVLAAWGVGSVELAQASVFATLDAEQIERVLAAIDTPGDLRRLRAALATDWLGLDA 632

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
               +                        +  +          +        R    +  +
Sbjct: 633  AALWRLTQVADAPAAVDESTPALDPADAMGWVERFSRYRMLWHERGFAVMWRTLMRELRV 692

Query: 520  AVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            A  LV      + +T +        +          T   +   +     E  +L     
Sbjct: 693  AQRLVAGADGERRLTNVNHLAELVQARAATQPGIAPTLRWLAAQREQGGGEEAQLRLESD 752

Query: 578  EEE----------GKTLSSLFSKIIETGSCIKANAIEWIDIIT----RLIDGETVKPKIE 623
                         G   + +F   +  G   +  +    D                   E
Sbjct: 753  RNLVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPSSGLPDAREYHDDSGEAVLHYGCDEE 812

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
            ++         E        + +  L   V+        + S     +         +G 
Sbjct: 813  EADRASRYAVREQAAERARLVYVA-LTRAVYRCYLVVGTYQSSRSTKESRRSVLNWLVGG 871

Query: 684  AAHDF--EMANGTRHLIYTRSLRENNIPTIASRWL----QRLLVLGGTDFFDNLKKRGQC 737
            + H F   +A          S        I  R L    +R+ +    D   +L  R   
Sbjct: 872  SGHTFDAWLAEPPDEAALAASWHALAGGPITLRALPEVTRRVPLESLQDQGVHLHARANR 931

Query: 738  YLDW------------TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND---- 781
                                     Q H  +    P  +        + +   +      
Sbjct: 932  RPLRDQWRMASFSGLIAAGGRSGDAQAHAPQEDVRPDHDEIADALESTPLVAPVAVANAP 991

Query: 782  --------PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
                     +   A     L  +       D +         + E       +    +  
Sbjct: 992  AHADDDILAFPRGAAAGDCLHRMFELADFTDASTWPDAIRGALRERPAPAAPELAARLPA 1051

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRHLFH-KISHSFLEHEEKIQSSIEKIFVNIPA-KMAI 891
            +M ++I      E +P                            ++ ++ +      +A+
Sbjct: 1052 MMHRLIAGVVSTELVPGMTLARLDPRRRLNELEFLFAAPSLDFPALRELLIEYGYPDVAL 1111

Query: 892  ESIGIH--LTGFADRIDLLKSGFVDITDYKT 920
            E   +   + GF D I     G   I D+K+
Sbjct: 1112 EPGVLRGYVKGFIDMIVEH-DGRFWIVDWKS 1141


>gi|76802570|ref|YP_327578.1| hypothetical protein NP3870A [Natronomonas pharaonis DSM 2160]
 gi|76558435|emb|CAI50026.1| hypothetical protein NP3870A [Natronomonas pharaonis DSM 2160]
          Length = 862

 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 59/483 (12%), Positives = 122/483 (25%), Gaps = 71/483 (14%)

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                +               +    LL        T +   +        ++ I D  K
Sbjct: 217 ALEAADIPFYGGPGFIDDPHHRAFVRLLRIAFRGSETTVGDVQPVLTQMGVDVPIDDHEK 276

Query: 556 LTVTCLQNVCLDEHRKLPNLWFE-----------EEGKTLSSLFSKIIETGSCIKANAIE 604
              T              ++              + G  L     ++   G    +   +
Sbjct: 277 RLETVDTPGIEWLQEFCASIEERTFAEVLSTYTNQTGIELPLFDEELQNLGLADDSVTND 336

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
            +D +   +    V P    +  + +     S  ++   +   G+++        +    
Sbjct: 337 GVDRLAYYLQTYEV-PVDRDNEGVLLADAKSSAYVDRPVVFHLGMSQDWTHSAPQRPWVD 395

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLG 723
           +            E+  G+    F+    +     Y         P     +L  L    
Sbjct: 396 T------------EQQFGRYIGSFQRLLQSGNQQYYLVQDAAGGEPVTPCLYLGDL---- 439

Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                D   +R    LD                 +P         T S S +   +N P 
Sbjct: 440 ----LDEEFERFSD-LDSVEHSRRPRSNDGGFDREPIGVEPETIETISQSSLNSYVNSPR 494

Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI---KKRINKNTPEINHLMKQIID 840
             +  R+++     HF +       G LFH+     +         +  E+  +M    +
Sbjct: 495 DYFFSRLVESPDQEHFVE-------GNLFHDFAEFYVNYPDIIATTDLEELVDVMLGEAE 547

Query: 841 SHF--EKENLPPHIDIIWRHLFHKISH-------SFLEHEEKIQSSIEKIFVNIPAKMAI 891
             F    E L      I   +  +           FL       ++    + + P    +
Sbjct: 548 PFFSSADETLRRRTYRIGLEMIVEYLDEHGPESDDFLTPASGWGTNFFAEYFDEPVDSPL 607

Query: 892 -----ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA--QKLIDP-------QL 937
                E   + + G  D +         + DYK+G   +      +  +DP       Q 
Sbjct: 608 TERWFEDSSLGVKGKIDLV-KAPD---HLLDYKSGSKKRTSQIVKRAAVDPPADTPNFQA 663

Query: 938 SLE 940
           +L 
Sbjct: 664 ALY 666


>gi|289705452|ref|ZP_06501846.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
 gi|289557837|gb|EFD51134.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
          Length = 963

 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 58/646 (8%), Positives = 154/646 (23%), Gaps = 88/646 (13%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     + G  +  +  I +           +             
Sbjct: 112 EILAITFTNKAAAEMRERVAGLIGPTAQRM-WISTFHSSAVRLLRNEAANI--------G 162

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++    +       R       +        +            K L + I  ++ E  +
Sbjct: 163 LKSTFTIYDSADSLRLVTTVAKQHELDPKRFAP-----------KALLNRISSLKNELVE 211

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            +D  A    +   W    A       + +T RL + NA          +          
Sbjct: 212 ADDYAA-TVAEGDPWGRAVAA----VYRGYTARLRQANALDFDDLIGMTVHMFEAFPRVL 266

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPN--------GAIVLPGLDCHIPTAIWN 272
              +     +++     +  A  RL+  +A            G  +    D       + 
Sbjct: 267 DNYRRRFRHVLVDEYQDTNHAQYRLIRLLAGPAGDPEGVETPGGELTVVGDSDQSIYAFR 326

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++      + T           +   L+      + + + +N +  R+       L
Sbjct: 327 GADIRNIVEFEQDFTD---------AVTIKLEQNYRSTQTILDAANAVIERNPDRRPKRL 377

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALI 392
                +         +  + +  +    +                L+          A+ 
Sbjct: 378 WTAEGEGPAIVGYAAENESAEAEWIASTI--------------DRLQDEDGIRPADVAVF 423

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R ++  L   GI   +  G             + L  I   +D + +  ++  
Sbjct: 424 YRTNAQSRALEERLVTRGIPYRVIGGTRFYDRKEIKDALAYLRVIVNPDDDVNVRRILNE 483

Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
           P                       +          + +      +T             +
Sbjct: 484 P-----------------------KRGIGDRAEGAVAAWAERNRSTFSAALRDAENAPGM 520

Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
           +    +     V  +      L     +        ++ + + +     ++  L +  + 
Sbjct: 521 AARSLKAVRGFVQMM----DDLGQVAESAGPATVLEAVLEQSGMLAALRESEDLQDESRA 576

Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
            NL                      ++  A+               +   E+   + ++ 
Sbjct: 577 DNLGELVAVVRSFETTHPDGTLSDFLEQVALVADADQLPTAPDVEGEALAEQQGQVTLMT 636

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
              ++ L F  + L G+  GV+P   +         +    L+  +
Sbjct: 637 LHTAKGLEFPVVFLTGMEHGVFPHARSMTDEKELAEERRRGLRGPD 682


>gi|240142082|ref|YP_002966592.1| putative ATP-dependent DNA helicase [Methylobacterium extorquens
           AM1]
 gi|240012026|gb|ACS43251.1| putative ATP-dependent DNA helicase [Methylobacterium extorquens
           AM1]
          Length = 666

 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 64/543 (11%), Positives = 147/543 (27%), Gaps = 75/543 (13%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
           +     D ++P     +     TK+A Q +R            I   + +   V      
Sbjct: 55  IARLVLDGVDPE---RILAITFTKQAAQNMRDRAARYVPDARRI--RLGTFHSVA-HALV 108

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
            +   +  L   +S +     +A L  +      +       E  L    +    +  ++
Sbjct: 109 MENRHAMRLPDKISILDTEDAVASLKKVAAALRTN-------EENLPRASTINKILSFSR 161

Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
           N    I+ +              +  Y  +     +F++     +T+   +       G 
Sbjct: 162 NTERTIEDV-------------VHSNYPQYIHAI-EFVEKVGAAYTQFRRKNALFDYDGL 207

Query: 211 QIALMRAEAEHLMKGTKGPII----IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
             AL +      +      +     I  +        R++  +  H     V+   D   
Sbjct: 208 LEALAKMLEHERLGPAIAAMFEEALIDEAQDLNALQIRIVRALRRH--DVRVMFVGDPSQ 265

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               +   +           +   +                   +     S E+   +  
Sbjct: 266 SIYQFRGASPDIMFTLVKECSAKVYLL-----------------ETNYRSSAEILDVANA 308

Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384
           + ++        + +       +P          LIE D++  EA +I  A+    +E  
Sbjct: 309 VEEAMRKRIPRALVSHCGTSGLLP---------RLIEVDDKAAEAAAIVDAILDRKNEGM 359

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
             ++ A++       R V+ EL    +   + AG+ ++       L  +  A   L +  
Sbjct: 360 ELEEQAIVVRSTANFRHVEAELIARKVPYTVRAGVKVTEAGAVRDLLCVARASLNLGNEP 419

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
           A   +++               A    E  A +  +       L++ +   +     N  
Sbjct: 420 AWQRILQ--------------LAPRVGERKAAKMVEAISASGSLQNAIGIILDAGVRNES 465

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
           +      L   D E        +   +  L      +         +D   +     Q+ 
Sbjct: 466 LRPVAHALRLVDDERGGPPAARLRLALNALEPLLEAEYRDDWKARKADVVAVIDIAHQHA 525

Query: 565 CLD 567
            LD
Sbjct: 526 DLD 528


>gi|311111760|ref|YP_003982982.1| ATP-dependent DNA helicase [Rothia dentocariosa ATCC 17931]
 gi|310943254|gb|ADP39548.1| ATP-dependent DNA helicase [Rothia dentocariosa ATCC 17931]
          Length = 648

 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 65/595 (10%), Positives = 153/595 (25%), Gaps = 71/595 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA +E+R                 +SLG V  +  T              
Sbjct: 106 QRVMALTFTTRAAEEMRLRL--------------RSLGAVGVQTRTFHSAA--------- 142

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                  L +L   W + +     D+       L    A  + ++ +   ++  I  E  
Sbjct: 143 -------LRQLRYFWPSAIGGSFPDIVK-HKAGLITEAAQRLRMSVD-RALVRDIAAE-I 192

Query: 165 KWEDLHALKNEKYGMWWL-------LAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217
           +W  +     +              +    +    + + +   E N        +  +  
Sbjct: 193 EWAKVSLFTPDTLTPHLHQRNLPSGITPQNMVRLFRAYEDLKDERNLIDFEDVLLLTVGI 252

Query: 218 EAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
             +       ++      ++       P   RL+       +   V+   D       + 
Sbjct: 253 IEDDDALAATIREQYRHFVVDEYQDVSPLQQRLLDAWLGERDDLCVV--GDASQTIYSFT 310

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             T +                Y  A  +      R   + +   +  +  R      +  
Sbjct: 311 GATSRHLLEFPRR--------YRGAHTVRLTRDYRSHSQVVELANRLLAARRPRPDSTE- 361

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS--- 389
                    +     K+ + +    +       ++  EA  IA  ++  L+++   +   
Sbjct: 362 --------FSWAPPLKLVSQRGPGVESQWFGYTDDEREAEGIAEQIQDLLEKDGVPASEI 413

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND-FMAIAT 448
           A++      +  ++  L   GI   +                  L A  K  D    +  
Sbjct: 414 AVLFRTNGQSGLLEAALADRGIPYQLRGAEQFFDRPEVKQAMLALRASAKSTDGSENVPR 473

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            V+  L   G+ EK    A    +         S  +  L++  ++ IA  +        
Sbjct: 474 YVREVLEPLGYTEKAPQSAGAVRQKWESLAAIVSM-VDHLEATRIEDIAQAEAAGAPVPH 532

Query: 509 QSRLSEEDKELAVLLVDHILQCITP--LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
           +  + +    LA  L       +    L +  + K      + +    +  +        
Sbjct: 533 RLTVHDVVATLAHRLATQDAPVMEGVTLASLHSAKGLEWDAVFLCGLNEGLMPITFAQTS 592

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
           DE  +   L +    +    L+    ++ +            +  +         
Sbjct: 593 DEIDEERRLLYVGITRARKYLWFTWSDSRTTGGRGKRRRSRFLDDIDPSRQSARH 647


>gi|332637522|ref|ZP_08416385.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Weissella
            cibaria KACC 11862]
          Length = 1261

 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/431 (10%), Positives = 109/431 (25%), Gaps = 60/431 (13%)

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
             L  +          +  +         L+ + +   R   +L+      ++ +L+ K  
Sbjct: 848  DLDHHLKLPTPQREFVKQARVRGAFAEQLRVLYVALTRAEQHLFMVGAYDSVKALWDKWS 907

Query: 593  ETGSCIKANAIEWIDI----ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
               +  +    EW  +       L+    ++              L S L  +D   +  
Sbjct: 908  LAEAGTEWMLPEWARLEGKSFMDLMGMALMRHPKAPE--------LASVLTAYDDKDVID 959

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
              E           F          L+       +A  D   A                 
Sbjct: 960  FGEIRTKAPKQPFNF---------GLEIVNGADLRALVDAYQAMPLSEAT------SEKT 1004

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                   +     +   D+  +   R   Y   +                         R
Sbjct: 1005 GATPDGIVNDWRSVLQFDYQFDEATRATAYQSVSEIKRLFEDPDLAA-----------GR 1053

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
                  I+             + +  F+   +        GT  H ++  +       + 
Sbjct: 1054 GLVDGRIQADEFAGLRFTDETLPEPTFMQEAETRISSAAIGTATHLVMQRVDLSAGAPSQ 1113

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIP 886
             ++  L+  ++D    ++ +     +I      +    F       Q  +  + +   + 
Sbjct: 1114 ADLRALVADLVDQELIEDKV---AHLISLSKIERF---FTNSPLGKQMVAHADSLQREVQ 1167

Query: 887  AKMAIESIG----------IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL---I 933
              + +++            + + G  D    +    V + DYKT     +  A+ L    
Sbjct: 1168 FSLLLDADRLYKDFQGSEKVLIHGIIDGYFQVDD-EVWLFDYKTDRVTPETAAETLTQRY 1226

Query: 934  DPQLSLEAAAL 944
              QL++ A AL
Sbjct: 1227 SGQLNVYAQAL 1237


>gi|269127944|ref|YP_003301314.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
 gi|268312902|gb|ACY99276.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
          Length = 702

 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 71/649 (10%), Positives = 147/649 (22%), Gaps = 70/649 (10%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
               V     T RA  ELR    ++           ++       + T          PP
Sbjct: 53  APQRVLAVTFTTRAAGELRGRLRQLGAPGV----QARTFHAAALRQLTYFWPKVIGGEPP 108

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                      R++      + +  +        +     A  I  AK            
Sbjct: 109 -----------RVVESKIALVAEAARACRLSYGRTELRDIAAEIEWAKVTQH-------- 149

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
             + ED  A              D +      + +   E N     G          E+ 
Sbjct: 150 --RPEDYVAGVERTGRKPPADVID-VARVYAVYEQLRRERNLLDFEGILELTAAMLTEYP 206

Query: 223 MKGT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                        ++       P    L+           V+   D +     +   T +
Sbjct: 207 EVARQVHDQYRYFVVDEYQDVNPLQKLLLDAWLGGREELCVV--GDPNQTIYSFTGATPQ 264

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                +       HP   + KL+       + V+    V     GR+    +  L     
Sbjct: 265 YLLDFTRE-----HPGARVIKLVRDYRSSPQVVRLANGVIGAARGRTARRHRLELVSQRP 319

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITAD 395
           D                       IE D+E  EA  IA   R  +DE     + A++   
Sbjct: 320 DGPEPV-----------------FIEYDDEIAEADDIARRARKLIDEGVPASQIAVLYRI 362

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +   +      G+ + +                    A+ +L          +    
Sbjct: 363 NAQSENFEAAFAAAGVPVVLHGAERFFERQEVR------EAVMRLRGAARAGADAETDGM 416

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                 +++       E               L +LV         +      Q     E
Sbjct: 417 GLVATVRHVLAGVGFTEQPPQGIGAARARWESLSALVRLAEDVAAADPDAALPQFVAELE 476

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
           ++             +  L   K  +        +++ T   V       ++E R+L  +
Sbjct: 477 ERAALQHAPTMEGVTLASLHAAKGLEWDAVFLAGLTEGTLPIVYAETAEQIEEERRLLYV 536

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT-------RLIDGETVKPKIEKSSTL 628
                 + L+  ++     G     +   +++ +                +   +     
Sbjct: 537 GITRAREHLTLSWALSRAPGGRKNRSPSRFLEGLRPQTFGPPAAPASRPRRRAGKGPLPC 596

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            + G   +  L             V  +           +  +  +   
Sbjct: 597 RVCGRPLTAALERKLGRCQDCPSAVDEELLEALKRWRAALAEEQGIPPY 645


>gi|257488080|ref|ZP_05642121.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tabaci
            ATCC 11528]
 gi|331013532|gb|EGH93588.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tabaci
            ATCC 11528]
          Length = 1230

 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 99/960 (10%), Positives = 221/960 (23%), Gaps = 134/960 (13%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A           + +   +   + L   
Sbjct: 271  FEKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAFEAMAQLKAALDSLPKP 330

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++   W+ A        +    R  E+     +    A + +        L++  
Sbjct: 331  DAAVLQHAAQWVSAR------FEEEKRRRAEMGFDDMLLRLDAALHSAGGERLATLIREQ 384

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  ++           +    D       +      +     
Sbjct: 385  FPVALIDEFQDTDPVQYRIFDSIYRLEGNDEQTGLFLIGDPKQAIYAFRGADIYTYLRAR 444

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T    H   +  +    +      V        +  G  +  +        SD     
Sbjct: 445  QATDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRTQGRGAFLFRNDQGNQVPFSDALAQG 504

Query: 344  ILENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK-------- 387
              E    +     +  V  +E++         ++ A S A  +   L+  ++        
Sbjct: 505  RKETLEDDGAPLTALTVWHLESEQPVSGVIYRQQLAASCASEIVRLLNAGQQGRAGFAML 564

Query: 388  ----------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                        A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A
Sbjct: 565  DKPLRGLRPADIAILVRDGKEAQAVRQQLSARGVRSVYLSDKDSVFAAQEAHDLLSWLKA 624

Query: 437  IFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              +        A    +   L                  ++  RG +  +    +  ++ 
Sbjct: 625  CAEPDSERTLRAALACITLDLPLAELERLNQDELAWERRVMQFRGYRAVWRSQGVLPMLR 684

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +        +        E      + L + + Q    L   +        +L++S  
Sbjct: 685  RLLHDFALPQTLM--TRTDGERVLTNLLHLSELLQQAAAELDGEQALIRHLGDHLALSGQ 742

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-- 611
                    Q + L+   +L  +    + K L      +    S    +            
Sbjct: 743  AGE----EQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDAD 798

Query: 612  ------LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                  L   E +  + +       L  L   L   +     G+ +      +      S
Sbjct: 799  GNSQISLQLTEALIQQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNASNSMLHRS 858

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             +           +         ++A G   +      +    PT       R       
Sbjct: 859  ALGYLLGGGVALAESAELKVWLRDLAQGCDAIAL----QPVPEPTDERFSAPRNEAALVK 914

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                        ++     L             P  P             ++L +D    
Sbjct: 915  LLVPKRCAAENWWIASYSALRIGDTVTTGADESPDSPQA-----------QKLFDDERLD 963

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                   L       + P   + GT  H ++     +         + L   +      +
Sbjct: 964  PEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFAVTAHAPDKLQDAVARRCNRR 1023

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV-----------NIPAKMAIESI 894
                      W +         L    ++      + +            +    A  ++
Sbjct: 1024 G------WAGWINTLSDWLQHMLNMPLRLSPDATPVALGELDQPNQYRIEMEFWFASNNV 1077

Query: 895  GIH---------------------------LTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
             +                              GF D     + G   + DYK+      +
Sbjct: 1078 NVAQMDALVRRFTHNNAPRAATETVSLNGMFKGFIDLTFEHE-GRYYVADYKSNWLGTDD 1136

Query: 928  TA-----------QKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKID 972
            TA               D Q  L   AL     +++      + +    Y+ L+    + 
Sbjct: 1137 TAYTELAMETAILDNRYDLQYVLYLLALHRQLKARMADYDYDQHMGGALYLFLRGSRSVS 1196


>gi|21241321|ref|NP_640903.1| glutamine synthetase adenylyltransferase [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|57012836|sp|Q8PPY3|GLNE_XANAC RecName: Full=Glutamate-ammonia-ligase adenylyltransferase;
           AltName: Full=Glutamine-synthetase adenylyltransferase;
           Short=ATase; AltName: Full=[Glutamate--ammonia-ligase]
           adenylyltransferase
 gi|21106646|gb|AAM35439.1| glutamine synthetase adenylyltransferase [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 941

 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 84/741 (11%), Positives = 186/741 (25%), Gaps = 48/741 (6%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           ARL       L +   D +             A  +A + A +    + E + WE    L
Sbjct: 200 ARLGQQLARLLDETTADGFSHRVDLRLRPFGTAGRVALSFAGMDQYFQREGRDWERYAWL 259

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------ 226
           K             +L+    +   R ++  A   +    A + AE     +        
Sbjct: 260 KARAVAGDIDAGEAWLETLRPFVYRRYLDFTALDGLREMKAAITAEVARHDRLDDIKRGP 319

Query: 227 ----------KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                     +   +I G         RL+  +        +       + TA       
Sbjct: 320 GGIREIEFLAQSLQLIRGGREPSLRERRLLPALQALVAAGQIDQENGQALSTAYRFLRRL 379

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +      PQ  L +    L +       L +       R        L P  
Sbjct: 380 ENRLQMLRDAQTHALPQAPLDRERIALGLGYAQWSALLDALAPQRARVAAEFAELLAPRV 439

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                  + +          + +A I  ++          AL      +  ++   +A  
Sbjct: 440 RATAPDALADYWRALPDGDAAPLAGIGLNDP----DGAHRALADFAQSSGVRALSDSARA 495

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L R +   L          A            +  LL A  +   ++A+          
Sbjct: 496 RLDRVMPALLHAATRASQPDA--------AVRRMLGLLQATLRRTSYLALLD-------- 539

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                  L+R  + L   AL   + +   + L  L+  RI+    +    H     +   
Sbjct: 540 --EQPSALARLVDVLSRSALLAERLAAYPLLLDELLDTRISGPLPDRAALHAACAHTLHI 597

Query: 517 KELAVLLVDHILQCIT-----PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            +    L +   + +       L T    + +      ++   +  V  + ++   +   
Sbjct: 598 DDTEAALRELNERRLALSFRIALATLDGRQQAVESTRQLAWLAEAVVQTVLHLARSDMLA 657

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                       +       +E G     + +   D    +   +  +P         + 
Sbjct: 658 AHGHVPGGSFAIVGYGSLGGLELGFGSDLDLVFLYDHPREVDASDGKRPLDAGRWFARLA 717

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
             + + L            +     +  K   +S +       +         A      
Sbjct: 718 QKVMALLAAETGAGRLYDIDVRLRPDGGKGALVSSLASYREYQRDRAWTWEHQA-----L 772

Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
              R +    +L +          ++        +    ++ R +  LD +       KQ
Sbjct: 773 VRARAVAGDAALCDAFAQVRRDTLMRVRDTAQLHEDVRKMRARMRAELDRSDAGRLDLKQ 832

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                      L+A     +  + + L           + +  ++P     P      TL
Sbjct: 833 GAGGLVDLEFVLQAGVLGLAAQQPQLLDACDTPALIDALARTHWLPDESAAPLHQAHATL 892

Query: 812 FHNIITELIKKRINKNTPEIN 832
               ++  + +R     P   
Sbjct: 893 VDAGLSCTLDRRPRLIAPTPA 913


>gi|134291623|ref|YP_001115392.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Burkholderia
            vietnamiensis G4]
 gi|134134812|gb|ABO59137.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Burkholderia
            vietnamiensis G4]
          Length = 1264

 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 77/806 (9%), Positives = 181/806 (22%), Gaps = 92/806 (11%)

Query: 196  TERLVELNASSPVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
              R  ++     +    A +R       A+ + K     +I      + P   R+   V 
Sbjct: 369  QARRAQMGFDDLLTRLDAALRGPNGERLADVIRKQFPVALI-DEFQDTDPVQYRIFDAVY 427

Query: 251  NHPNG---AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
                      ++   D       +      +      +     H      +    +    
Sbjct: 428  RADTADAWRALILIGDPKQAIYAFRGADIHTYLAARRSCDGRLHTLAKNFRSSHAMVDAT 487

Query: 308  EDVKRLGNVSN-EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                 +      E          + +P  T   +    +           +   L  AD+
Sbjct: 488  NHCFAVAEARAGEGAFLFRRSGDNPVPFSTVSAQGRAEVFVVNGAAPPALTAWWLPPADD 547

Query: 367  ---------EREEAISIAIALRMSLDENKK-----------------KSALITADRNLAR 400
                         A S A  +   L+  ++                   A++  +R  A 
Sbjct: 548  GKPTTKTAYLESIAASCATEMVRLLNLGQRGDTGFAGKDGLQPLRPADIAVLVNNRGEAD 607

Query: 401  RVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
             ++  L  R   ++ +S    +     ++ L   L A    +D   + T +       G+
Sbjct: 608  AIRGALAARNVRSVYLSDRSSVFQCAQAAELQHWLAACADPDDGRLVRTALSTATLGLGW 667

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
             E              +   +  ++    +  VL  +    N+  VP        + ++ 
Sbjct: 668  AELDARFGSEIAWEACVLQFRGYHECWR-RQGVLPMLRRFLNDFGVPARLLGTHADGRQG 726

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
                   +   +      +       G      +        ++           L  + 
Sbjct: 727  VPGGERILTDLLHLAELLQQASAMIDGLHGQIRYLADQRAASEDSDAGSDTVQTRLESDG 786

Query: 580  EGKT---------LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
            +            L      +    +   A A +         D   +     + +   +
Sbjct: 787  DLVKIVTIHKSKGLEYPLVFLPFACAHRPAKATDLPLKWHDENDELRISLDGGRGALEQV 846

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                    L    + L       W             +   +         G      + 
Sbjct: 847  DRERLGEDLRKLYVALTRARHATWIGMAPLEALERTAIGYLIGGTQPLAGGGLE-DLLQT 905

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            A G    I      E        R+  R+          + +   + +   +     T  
Sbjct: 906  AFGACENIAVIPAPEPGGE----RYTPRIDEARRGAARQSARVVREPWWIASYSSLRTAG 961

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
            + H +   P  P E      S +E                +           P  +++G+
Sbjct: 962  KNHREHAAPDTPGEDGFNEASAAERDVDQQPAAETPRHAPMPDANASTLHDFPRGSEQGS 1021

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDS------------------------HFEKE 846
              H+++         +   +   L + +                              + 
Sbjct: 1022 FLHDLLEWAAAHGFARIAADREALREVVARRCSVRGWQSWIDPLTDLVMQIVSTPLVLRG 1081

Query: 847  NLPPHIDIIWRHLFHKISH----SFLEHEEKIQSSIEKI------FVNIPAKMAIESIGI 896
                    I               F        +    +          P    ++   +
Sbjct: 1082 GHGIEPTSIELAALATAVGEMEFWFAAKHVDTAALDRLVCARTLDGAERP---PLDPATL 1138

Query: 897  H--LTGFADRIDLLKSGFVDITDYKT 920
            +  L GF D +   + G   + DYK+
Sbjct: 1139 NGMLKGFMDLVFEHE-GRYYVADYKS 1163


>gi|290957550|ref|YP_003488732.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
 gi|260647076|emb|CBG70175.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
          Length = 740

 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 56/602 (9%), Positives = 138/602 (22%), Gaps = 62/602 (10%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           ASV     T RA  E+R    ++           ++       +       +     P  
Sbjct: 69  ASVLAVTFTNRAAGEMRGRLRQLGAAGV----QARTFHSAALRQLQYFWPKAVGGAMP-- 122

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    R++      + D           +     A  I  +K    +         
Sbjct: 123 ---------RIVDRKIQLVADAAAACRIRLDRNELRDAAAEIEWSKVTRTV--------- 164

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
              D  A   +         A+ +      + E   E          +  +    +    
Sbjct: 165 -PSDYAAATAKHGREAPRDPAE-IAQIYAVYEELKRERVVIDFEDVLLLTVGILQDRQDI 222

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +      ++       P   RL+       +   V+   D       +   T    
Sbjct: 223 AEQVRSQYQHFVVDEYQDVSPLQQRLLELWLGDRDDLCVV--GDASQTIYSFTGATPDHL 280

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      HP  ++ KL+       + V     + ++  GR+               
Sbjct: 281 LDFR-----HRHPGATVVKLVRDYRSTPQVVHLANGLLSQARGRAA-------------- 321

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSALITADRN 397
                   ++ + +    +    E  +E  EA   A  +R   +      + A++    +
Sbjct: 322 ----DHRLELISQRAPGPEPRYTEYTDEPAEAEGAARRIRDLVAAGVPAGEIAILFRTNS 377

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +   +  L   G+   +                + L A  +      +           
Sbjct: 378 QSETYEQALADAGVPYQLRGAERFFDRPEVRKAGAALRAAARFGGNDTLLE----DAVDL 433

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
               + +   +                   L +LV                      +++
Sbjct: 434 PSQVRAVLSGEGWTGEPPAGSGAVRERWESLAALVNLAHDFAAARPDATLGDLVAELDER 493

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             A          +  L + K  +      + +++          +  ++E R+L  +  
Sbjct: 494 ANAQHAPTVQGVTLASLHSAKGLEWDVVFLVGVAEGMMPITYARTDEQIEEERRLLYVGV 553

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
               + LS  ++     G         ++D +         +     +  +         
Sbjct: 554 TRAREQLSVSWALSRAPGGRPGRRPSRFLDGLRPGSTARAGRTGAGGTGGVERGSAGGRT 613

Query: 638 LL 639
             
Sbjct: 614 GQ 615


>gi|255103332|ref|ZP_05332309.1| hypothetical protein CdifQCD-6_21140 [Clostridium difficile
           QCD-63q42]
 gi|255652442|ref|ZP_05399344.1| hypothetical protein CdifQCD_19836 [Clostridium difficile
           QCD-37x79]
          Length = 268

 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 43/191 (22%)

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
           YSFS++      P+  Y   +  L+              G   H+++ +L  ++      
Sbjct: 6   YSFSKLNAFHTCPFQYYLTYVKNLN-REQNCYGY----YGNELHSLLEQL--QQRKITNQ 58

Query: 830 EINHLMKQIID-SHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
           E      ++I+ ++    N P P+  I +         +F+  E          ++    
Sbjct: 59  EAIQKYNEVIEYANLMDYNFPTPNSRINYLECILHYIENFVPIECDR------YYIEEYF 112

Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDY------------KTGDNPKKETAQKLIDP 935
           +  I   GI + G+ D +  +    + + DY            K                
Sbjct: 113 EFDIN--GITMRGYID-LYYIIGNKIYVIDYKSSSKFSKKDLPK-------------KSM 156

Query: 936 QLSLEAAALKA 946
           QL L A  LK 
Sbjct: 157 QLILYAMYLKE 167


>gi|298488371|ref|ZP_07006402.1| Exodeoxyribonuclease V beta chain [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
 gi|298156996|gb|EFH98085.1| Exodeoxyribonuclease V beta chain [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
          Length = 1230

 Score = 48.8 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 98/947 (10%), Positives = 227/947 (23%), Gaps = 114/947 (12%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
               +  W         DL        P   A A           + +   +   + L   
Sbjct: 271  FEKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAFEAMAQLKAALDSLPKP 330

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGTKG 228
                       AA ++    +    R  E+     +    A +          L++    
Sbjct: 331  DAAVL----QHAAQWVSARFEEERRRRAEMGFDDMLLRLDAALHGAGGERLATLIREQFP 386

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSN 285
              +I     + P   R+  ++           +    D       +      +       
Sbjct: 387  VALIDEFQDTDPVQYRIFDSIYRLEANDEQTGLFLIGDPKQAIYAFRGADIYTYLRARQA 446

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
            T    H   +  +    +      V        +  G  +           SD       
Sbjct: 447  TDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRPQGRGAFLFRDDQGNQVPFSDALAQGRK 506

Query: 346  ENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK---------- 387
            E    +     +  V  +E++         ++ A S A  +   L+  ++          
Sbjct: 507  ETLEVDGAPLTALTVWHLESEQPVSGVIYRQQLAASCASEIVRLLNAGQQGRAGFAMLDK 566

Query: 388  --------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                      A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A  
Sbjct: 567  PLRGLRPADIAILVRDGKEAQAVRQQLSARGVRSVYLSDKDSVFAAQEAHDLLSWLKACA 626

Query: 439  KL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            +        A    +   L                  ++  RG +  +    +  ++   
Sbjct: 627  EPDSERTLRAALACITLDLPLAELERLNQDELAWERRVMQFRGYRAVWRSQGVLPMLRRL 686

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            +        +        E      + L + + Q    L   +        +L++S    
Sbjct: 687  LHDFALPQTLM--TRTDGERVLTNLLHLSELLQQAAAELDGEQALVRHLGDHLALSGQAG 744

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR---- 611
                  Q + L+   +L  +    + K L      +    S    +              
Sbjct: 745  E----EQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDADGN 800

Query: 612  ----LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                L   E +  + +       L  L   L   +     G+ +      +      S +
Sbjct: 801  SQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNASNSMLHRSAL 860

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR---WLQRLLVLGG 724
                       + +       ++A G   +         +    A R    L +LLV   
Sbjct: 861  GYLLGGGVALAESVELKVWLRDLAQGCDAIALQPVPEPTDERFSAPRNEAALVQLLVPKR 920

Query: 725  TDFFDNLKKR------GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                +           G        +   + +       +   P   +    S  +I + 
Sbjct: 921  RAAENWWIASYSALRIGDTVTTGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIHRF 980

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
               P        L L++  +            L   +     ++        ++  ++Q+
Sbjct: 981  PRGPNPGTFLHGL-LEWAGNEGFALTAHTPELLRDAVARRCSRRGWAGWIDTLSDWLQQM 1039

Query: 839  IDSHFE---------------------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            ++                         +       + +       +   F        ++
Sbjct: 1040 LNIPLRLSPDATPVALGELNQPNQYRIEMEFWFASNNVNVAQMDALVRRFT------HNN 1093

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA-------- 929
              +        +++        GF D     + G   + DYK+      +TA        
Sbjct: 1094 APRAATE---TVSLNG---MFKGFIDLTFEHE-GRYYVADYKSNWLGTDDTAYTELAMET 1146

Query: 930  ---QKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKF 969
                   D Q  L   AL     +++      + +    Y+ L+   
Sbjct: 1147 AILDNRYDLQYVLYLLALHRQLKARMADYDYDQHMGGALYLFLRGSR 1193


>gi|256785335|ref|ZP_05523766.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 716

 Score = 48.8 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/411 (9%), Positives = 93/411 (22%), Gaps = 58/411 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +SV     T RA  E+R    ++           ++       +              + 
Sbjct: 50  SSVLAVTFTNRAAGEMRGRLRQLGASGV----QARTFHSAALRQLQYFW------PKAIG 99

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                  L RL+      + D                    I  +K    +         
Sbjct: 100 G-----SLPRLVDRKIQLVADAAAACRIRLDRGELRDVTAEIEWSKVTQTVPADYAPAAA 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH--- 221
           K          +                  + +     +        +  +    +    
Sbjct: 155 KAGREAPRDPAEIAQ-----------LYAAYEDLKRARSVIDFEDVLLLTVAVLQDRHDV 203

Query: 222 --LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
              ++      ++       P   RL+       +   V+   D       +   T    
Sbjct: 204 AEQVRAQYQHFVVDEYQDVSPLQQRLLELWLGDRDDLCVV--GDASQTIYSFTGATPDHL 261

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      HP  ++ KL+       + V     +  +  GR+               
Sbjct: 262 LDFRGR-----HPGATVVKLVRDYRSTPQVVHLANGLLAQARGRAA-------------- 302

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397
                   ++ + +    +    E  +E  EA   A  +R  +D      + A++    +
Sbjct: 303 ----DHRLELVSQRPAGPEPGYAEYSDEPAEAEGAARRIRELIDSGVPAAEIAVLFRTNS 358

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            +   +  L   G+   +                S L A  +     ++  
Sbjct: 359 QSETYEQALADAGVPYQLRGAERFFDRPEVRKAGSALRAAARFGGNDSLLD 409


>gi|225164825|ref|ZP_03727050.1| UvrD/REP helicase [Opitutaceae bacterium TAV2]
 gi|224800556|gb|EEG18927.1| UvrD/REP helicase [Opitutaceae bacterium TAV2]
          Length = 670

 Score = 48.8 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 68/513 (13%), Positives = 126/513 (24%), Gaps = 61/513 (11%)

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT-YKTNKNST 544
                L    +A  K   H     +R       L   L          L T       + 
Sbjct: 173 CADNPLAAAMLALFKAAAHPGDEFARQHLRMTPLHAALAARRWATPEDLSTGLLRQIYTD 232

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               +  DW +     L            + +  E    L+       ETGS   A  I+
Sbjct: 233 GFERTTEDWLRRLEPAL---------PPDDTFNRERADQLAEAARLFDETGSRDIAEFIQ 283

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN----EGVWPKNTAK 660
           + +             +IE  + + ++   +++ L FD ++L  L             A 
Sbjct: 284 FCE--------RHTVKEIESDAVIRVMTIHKAKGLGFDLVLLPDLAGNSLATRRHDALAV 335

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAH-----------------DFEMANGTRHLIYTRSL 703
           +   +R  +  LNL     Y                        F +A     L      
Sbjct: 336 HKDNARDTRWILNLPPKLFYENDPVLAAHTAAEAADEAYEKLCLFYVAMTRAKLGLYLIT 395

Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
                 + +  + + L    G+   D               L                  
Sbjct: 396 EPVKEKSTSKNFPKILTDALGSGRGDTRATSTAAAEIAIGDLLAPGPYQTGDPAWFHQRT 455

Query: 764 EAQPRTYSFSEIKQLIND-----PYAVYARRILKLDFIPHFKKDPDRTDRGTL-FHNIIT 817
                  S       +        Y+   RR  +     H    P     GT   H    
Sbjct: 456 LKTDTQMSTQHSPLDVGCWMLDVGYSAAPRRRARTPSGAHTGAIPGALLFGTDGEHAASH 515

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
                        ++        S  +  ++P       R     ++   L       + 
Sbjct: 516 GTAVHTALAAIEWLDTWNATDWTSTLQTASIPATAINEARACIQSLA---LRALFARPTD 572

Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG------FVDITDYKTGDNPKKETAQK 931
             +++     +  I+     +TG  DR+ L +         V I D+KT          +
Sbjct: 573 TAEVWRERSFEAIIDDA--WITGVFDRVVLTRDAATGRVTTVTIYDFKTDRVRDVADQDR 630

Query: 932 LIDP---QLSLEAAALKAGSFSQIDCRKVANLF 961
           +I     QL++   A      + +   ++    
Sbjct: 631 IIARYNEQLTIYRRAAA--LLTGLPPDRIKAAL 661


>gi|188993814|ref|YP_001905824.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            campestris str. B100]
 gi|167735574|emb|CAP53792.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            campestris]
          Length = 1372

 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 82/799 (10%), Positives = 175/799 (21%), Gaps = 52/799 (6%)

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
            ++   +RL    A + V         + +   +   GP   A      P         A 
Sbjct: 437  AEALVQRLRAQYAIALVDEFQDTDDRQWQIFSRV-FGPEHAASGEAFAPDDDADFDNAAG 495

Query: 252  HPNGAIVLPGLDCHIPTAIWNTIT----------EKSTNITSSNTTYSTHPQYSLAKLLD 301
             P   ++    D       +               +       N         ++  L  
Sbjct: 496  APPPRLLALIGDPKQAIYGFRGGDVQTYLAAATTAQRAPPLEHNFRSRPGVLAAIDALYA 555

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                    +           G     +        +            P  +      + 
Sbjct: 556  QAGYAEAFLTEGIAFHPVQPGTKRSDADLLRDGAAAPALTLWRAPAPPPPEKGKPKPWSA 615

Query: 362  IEADNEREEAISIAIALRMSLDENKK-----------KSALITADRNLARRVKLELTRFG 410
              A      A   AI   ++   +               A++      A R++  L   G
Sbjct: 616  GRARELCTAACVAAIRGWLAGGRDGSASINGRPVQAGDIAVLVRSHGEATRIQQALGAVG 675

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA--- 467
            I    +    L  T  +  L +LL A+    D   +   +   L                
Sbjct: 676  IPAVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGEDAAAIAALEHDGE 735

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
            ++          +  +      +LV D  AT            R      +LA LL +  
Sbjct: 736  RHRRWQQQALDWRERWQRGGPLALVGDLGATHGQRLLALVDGERRLTNYLQLAELLQEAD 795

Query: 528  LQCITP------LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
             + + P      L     N +       +   +      +  +   +  + P ++    G
Sbjct: 796  TRALGPHGLVDWLARRIANADDNDETQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIG 855

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
               +   S           +  +     ++    +T      +++        ++RLL  
Sbjct: 856  IGRADK-SPGRHCVVHAPPHGRQLHWNTSKWSADDTASWSTAETAWKHEQRAEDARLLYV 914

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG------TR 695
                                      M  D     A    G  A D              
Sbjct: 915  GLTRAEHALWIATGAFHQHERTALAPMLRDPAALQASAGAGVIALDDTAPPATLPRLPAD 974

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
              +   + R      +   W+     L   D   +                  ++     
Sbjct: 975  DAVQVPAARLAQRHVVPDWWVYSFTQLANADAGSDPMASATLASSGGSDEPPASEPVSAP 1034

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHN 814
                          +  +         +A +                  +   RG    +
Sbjct: 1035 AEVEAFDPRFAGNRFGVAMHDVFERCDFAAWRNWCPGQPAPEGQAAAILEALQRGGYAQD 1094

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
             + + +          +   + +        E    +       +      + L    + 
Sbjct: 1095 ELDDGLAMLTRLVGHTLTVTLPEGTCLAAVPEPQRRNEMEFHFAMRPTRVDALLALLHRF 1154

Query: 875  QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-------KKE 927
                  +     A  A + +   +TG  D +     G   + DYK+   P        + 
Sbjct: 1155 G-----VVTERQAFGARQRLEGLMTGLID-LTYCADGRWYVLDYKSNRLPAYDPDALARA 1208

Query: 928  TAQKLIDPQLSLEAAALKA 946
             A    + Q  +   AL  
Sbjct: 1209 MAHSEYELQALIYTIALHR 1227


>gi|319788629|ref|YP_004148104.1| exodeoxyribonuclease V subunit beta [Pseudoxanthomonas suwonensis
            11-1]
 gi|317467141|gb|ADV28873.1| exodeoxyribonuclease V, beta subunit [Pseudoxanthomonas suwonensis
            11-1]
          Length = 1205

 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 86/966 (8%), Positives = 198/966 (20%), Gaps = 145/966 (15%)

Query: 60   LRSEFIEITGKKST--ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARL 115
            LR   +     K           + D+  +          ++      + +     L + 
Sbjct: 238  LREALLSAVAGKVLHGGSYKAAWIADLFAQLRRWCQAGEPHVPFAHPKLGQLYRATLLKC 297

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
                                 +  +   +A   A+ +A +                    
Sbjct: 298  TSKDGAGKTPDSPLCAAVEAYAQAVEQVSAYREARCVAML---------------HQVRA 342

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
                        L++  + + + + ++  +    +   L     E          ++   
Sbjct: 343  DARRRLATLKRQLRV--QTYDDLIDDVANALEGPHADELAGRLREQYAIA-----LVDEF 395

Query: 236  TGSIPATARLMSTVANHPNGAI-VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
              +     R+   V    +G   +    D       +     ++          +     
Sbjct: 396  QDTDLRQWRIFERVFGAASGDPALFLIGDPKQAIYRFRGGDVETYLAARGTAKAAPPLDR 455

Query: 295  SLAKLLDFLDIKREDVKRLGNV---------SNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
            +       L        R G                G     +       T+        
Sbjct: 456  NFRSRPAVLSAIEAMYTRAGATAFVDGRIVFHPVQPGGKRADAGFQRDGTTAPALTLWQA 515

Query: 346  ENKIPNIQKCFSDVALIEADNEREEA--ISIAIALRMSLD---------ENKKKSALITA 394
                 +           ++ +    A   +I   L  +                 A++  
Sbjct: 516  PAPPVDSNGKRKPWPAGKSRDLATAACVAAIHSVLVDARAGRASIDGRPVRPGDIAVLVR 575

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
              + A R++  L + GI    +  + L  T  +  L +LL A+   +D   +   +   L
Sbjct: 576  KHHEATRIRQALAKVGIPAVAAGNLSLFCTDEAHELLALLQALLHGDDDSRLRAALATVL 635

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                        A           +  +       +L       Q     +         
Sbjct: 636  VGQDAQHIAALDA-----------DGPAMQAWRATALGWRERLDQGKPLVLIGELCARQA 684

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                  V     +   +      +       G   + DW +  +                
Sbjct: 685  TRLLALVDGERRLTNYLQLAEQLQVAWRHALGPHGLVDWLERAI------AQASSDDETQ 738

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
            L   E       + +     G       + ++ I  ++ D        +      +L   
Sbjct: 739  LLRLESDAHRVQIVTLHKSKGLEYPLVFLPYVGIGGKVRDPGRCITARDPHDRAPVL--- 795

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
                L  DT       +       A++                      A   +      
Sbjct: 796  -HWKLQADTSGWNQAVDEWKTGEAAED----------------------ARLLYVGLTRA 832

Query: 695  RH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
            R  L        N+  T     +     L        +   G+  +D          Q  
Sbjct: 833  RDALWLATGEFYNHGKTALWPMVSDPQELAKALPGAIVLDAGEPPVDLPWLPAEAEGQVP 892

Query: 754  YKRPKPFPPLEAQPR------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
              R    P                     + S   Q         A    +      +  
Sbjct: 893  PARELSRPLASDWWVYSFTQLANADGAGDTSSAATQPAPGGRDEPASPEAEAPVDEAYDP 952

Query: 802  DPDRTDRGTLFHNIIT--ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
                +  G + H ++   +    +  +         +Q I                   +
Sbjct: 953  RFSGSRFGVVLHEVLEFADFAAWQDWQPGDPAPAGEEQRIGKALRNAGYAETDLEDGIAV 1012

Query: 860  FHKISHSFL-------EHEEKIQSSIEKIFVNIPAKMA---------------------- 890
              +++   L            +     +  +     +A                      
Sbjct: 1013 LTRLAGHTLTVPLPEGARLAALPEDQRRAEIEFQFALAPTRTDALLSLLHRHGLLHGRSG 1072

Query: 891  ---IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-------KKETAQKLIDPQLSLE 940
                  +   +TG  D +  L  G   + DYK+   P        +         Q  + 
Sbjct: 1073 FGGRRRLEGLMTGLID-LTYLHDGRWYVLDYKSNRLPGYGPQQMAEAMEHSEYQLQALIY 1131

Query: 941  AAALKA 946
              AL  
Sbjct: 1132 TVALHR 1137


>gi|15837025|ref|NP_297713.1| exodeoxyribonuclease V beta chain [Xylella fastidiosa 9a5c]
 gi|9105263|gb|AAF83233.1|AE003893_10 exodeoxyribonuclease V beta chain [Xylella fastidiosa 9a5c]
          Length = 1212

 Score = 48.4 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 81/818 (9%), Positives = 197/818 (24%), Gaps = 91/818 (11%)

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            + + + +  +  +    +++AL+R+  +          ++     +  A  R+   V   
Sbjct: 363  QTYDDLIQHVAQALDGPHRLALVRSLRQQ-----YRMALVDEFQDTDVAQWRIFHHVFGD 417

Query: 253  PNGAI-------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
               A        +    D       +      +    ++    +   + +       L  
Sbjct: 418  TEHAHTADLTPALFLIGDPKQAIYGFRGGDVHTYLAAAARAERAPPLERNFRSRPLLLRA 477

Query: 306  KREDVKRLGNVS------------NEMYGRSMVISKSFLPPDTSDMRNTDIL-------- 345
                  + G+ +               + R   +S + +P     +              
Sbjct: 478  VEALYTQAGDAAFLTPGIAFHPVQPGTHCRDTDLSNAGVPAPALQVWQAPPPLDSTAKGK 537

Query: 346  -ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
             +    +  +     A + A ++         AL           A++      A  ++ 
Sbjct: 538  PKPWNADAARALCTDACVHAIHQWLADAQTGRALLDGRPVGAGDIAVLVRSHREATLMQQ 597

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK-- 462
             L R GI    +    L TT  ++   +LL A+    D   + T +   L          
Sbjct: 598  ALARAGIPAVAAGKRSLLTTDEANEALALLLALLHSADEGRLRTALSTVLVGLTAETIAT 657

Query: 463  -YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                   +          +          L+ D  A             R      +L  
Sbjct: 658  FDHDSVASRHWQRQALHWRERLHSGGPLGLLTDLCALHAARLLSLFDGERRLSNYLQLGE 717

Query: 522  LLVDHILQCIT--PLVTYKTNKNSTCGNLSISDWTKL----------------------- 556
            LL    L+ +    L+ +   + +   N   +   +L                       
Sbjct: 718  LLQQVHLRALGLHGLIDWLARRIAEAKNDDETQLLRLESDARRVQIVTLHKSKGLEYPLV 777

Query: 557  -TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                           +   +   ++G+ L     K        +    +      +  + 
Sbjct: 778  FLPYVAIGHSHAGPGRYCVVHDAQQGRCLHWCLDKQAPEWQRAETAWKQ-----EQRAEE 832

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +       +   +     +      T +   L +           F + V  + L   
Sbjct: 833  ARLLYVGLTRAKHALWLATGTFYQTERTALWPLLGDPQAVTAQPGIVFDTAVPPAILPRL 892

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            T E+      H    A   +  + +     +      +   +                 G
Sbjct: 893  TPEQP-----HSVPPARTAQRALLSDWWVYSFTQLAHA---KAEPAPDAGRRIAEPLTGG 944

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
            Q    W         Q      +           +  +  +      +  ++        
Sbjct: 945  QDEPAWP----QDAIQQSLPGSEVPADPRFIGIRFGVALHEVFERTDFLAWSTWRANAPV 1000

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                +       RG+ +   + E ++  +   TP + H +  ++       ++P      
Sbjct: 1001 PATERAVLLHALRGSGY---VAEDVEAGVALLTPLVGHTLTSVLPEGVRLCDVPTTERRP 1057

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915
                   +  + ++    +      +       M     G+ +TG  D I     G   +
Sbjct: 1058 EIEFQFVVQATAVDALLALLHDHGLLQQRQSFGMRRRLEGL-MTGMIDLIYRHA-GRWYV 1115

Query: 916  TDYKTGDNP-------KKETAQKLIDPQLSLEAAALKA 946
             DYK+   P                D Q  +   AL  
Sbjct: 1116 LDYKSNRLPDYTPAHLSVAMTNSEYDLQALIYTVALHR 1153


>gi|227486911|ref|ZP_03917227.1| superfamily I ATP-dependent helicase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092985|gb|EEI28297.1| superfamily I ATP-dependent helicase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 686

 Score = 48.4 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/441 (9%), Positives = 101/441 (22%), Gaps = 66/441 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     TKRA  E+R     +   +       ++       +           +   S
Sbjct: 56  QRVLAVTFTKRAAGEMRDRLANMGIPRV----QARTFHSAAMRQLAYFWPRFAG-DLSYS 110

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            + + L L          +    +     +           I  AK              
Sbjct: 111 LLDKRLPL----------VAQAARSCGVSTDTETLRDLTGEIEWAKATL----------I 150

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN--ASSPVGYQIALMRAEAEHL 222
             ++        +    + +   +      + E                  L     +  
Sbjct: 151 SPDNYPEQVETFHRTPPV-SGKEVGQVYAAYEELKYRHGMVLLDFDDVINQLATGIEKVQ 209

Query: 223 -----MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +      +I       PA  RL+       +   V+   D +     +   +  
Sbjct: 210 GVADEFRQQYRTFVIDEYQDVTPAQQRLVRAWLGDRDDLTVV--GDANQTIYSFTGASPS 267

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                +       +P+    +L                           I+       + 
Sbjct: 268 FLLDFT-----RDYPEAVTVRLQRDYRSTP------------------QITDVANAVISK 304

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITAD 395
                     ++  ++           ++E +EA +IA  ++  ++      + A++   
Sbjct: 305 ARGRIAGTRLQLQGMKPPGQPPQFATYESEPDEAHAIAKKIQRLIETGTPPAEIAVLYRI 364

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF------MAIATL 449
              +   +  L+  GI   +  G             S +  +             A+  +
Sbjct: 365 NAQSAVFEEALSDAGIVYQVRGGEGFFLRPEIRQAMSGVTRLANNQRSGDIDPVEAVTAV 424

Query: 450 VKHPLAKFGFPEKYLSRAKNA 470
           ++        PE   +R +  
Sbjct: 425 LRRQGMTPEEPEGQGARERWQ 445


>gi|188574576|ref|YP_001911505.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae
            PXO99A]
 gi|188519028|gb|ACD56973.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae
            PXO99A]
          Length = 1357

 Score = 48.4 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 77/740 (10%), Positives = 158/740 (21%), Gaps = 41/740 (5%)

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
            I G  G    T    +  A               +  AI     +   +        + H
Sbjct: 481  IYGFRGGDVRTYLAAAVTAEPAPPLSHNFRSRPGVLAAIDALYAQAGYSDAFLTDGIAFH 540

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
            P  +  K +D    +         +           + +         +       +   
Sbjct: 541  PVQAGTKRVDADLQRDGATAPALTLWRAPEPPPPSDAAAAKTKQAGKPKPWSAGRARELA 600

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
               C + +    A      A   A  +           A++      A R++  L   GI
Sbjct: 601  TAACVAAIRGWLAGGRDGTATINARPV------QAGDIAVLVRSHGEATRIQQALGAVGI 654

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA---K 468
                +    L  T  +  L +LL A+    D   +   +   L                +
Sbjct: 655  PAVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGEDAIAIAALERDGER 714

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
            +          +  +      +L+ D  AT            R      +LA LL +   
Sbjct: 715  HRRWQQQALDWRERWQRGGPLALIGDLGATHGQRLLALVDGERRLTNYLQLAELLQEADA 774

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTK-LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            + + P                  D  +    +  + V +    K   L +         +
Sbjct: 775  RALGPHGLVDWLLRRIANADDNDDAQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGI 834

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
                   G     +A +    +   +D +       +++        ++RLL        
Sbjct: 835  GRSDKGAGRHCVVHAPDSGRQLHWKMDRDDPTWSAAEAAWKQEQRAEDARLLYVGLTRAE 894

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT------RHLIYTR 701
                                M   L+        G    D                    
Sbjct: 895  HALWIASGPFHQHERTALAGMLRALDALQGAAGEGAVVVDTSTPPAHLPRLPPPREAQVP 954

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT----TKQPHYKRP 757
              R          W+     L   D            +  +   D               
Sbjct: 955  PARNPQRHIAPEWWVYSFTQLANADAGAATDPMASATVVGSGGSDEPSGSEAVAVAVGTD 1014

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHNII 816
                        +            +A +                  +   RG       
Sbjct: 1015 AEPFDPRFAGNRFGVVMHDVFERCDFAAWQVWRPGQPAPDGQAAPILEALQRG------- 1067

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEK---ENLPPHIDIIWRHLFHKISHSFLEHEEK 873
                +  ++     +  L+   +     +    ++P             +  + +E    
Sbjct: 1068 -GYAQDELDDGLAMLTALIGHTLTVALPEGRLADVPEPQRRNEMEFHFAMRPTRVEALLA 1126

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------K 926
            +      +             G+ +TG  D +     G   + DYK+   P        +
Sbjct: 1127 LLHRFGVVGDRQAFGARQRLEGL-MTGLID-LTYTVDGRWYVLDYKSNRLPSYDADALAR 1184

Query: 927  ETAQKLIDPQLSLEAAALKA 946
              A      Q  +   AL  
Sbjct: 1185 AMAHSEYALQALIYTVALHR 1204


>gi|320326111|gb|EFW82168.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            glycinea str. B076]
          Length = 1230

 Score = 48.4 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 97/952 (10%), Positives = 228/952 (23%), Gaps = 118/952 (12%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A           + +   +   + L   
Sbjct: 271  FEKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAFEAMAQLKAALDSLPKP 330

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++   W+ A        +    R  E+     +    A + +        L++  
Sbjct: 331  DAAVLQHAAQWVSAR------FEEEKRRRAEMGFDDMLLRLDAALHSAGGERLATLIREQ 384

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  ++           +    D       +      +     
Sbjct: 385  FPVALIDEFQDTDPVQYRIFDSIYRLEGNDEQTGLFLIGDPKQAIYAFRGADIYTYLRAR 444

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T    H   +  +    +      V        +  G  +           SD     
Sbjct: 445  QATDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRPQGRGAFLFRDDQGNQVPFSDALAQG 504

Query: 344  ILENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK-------- 387
              E    +     +  V  +E++         ++ A S A  +   L+  ++        
Sbjct: 505  RKETLEVDGAPLTALTVWHLESEQPVSGVIYRQQLAASCASEIVRLLNAGQQGRAGFAML 564

Query: 388  ----------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                        A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A
Sbjct: 565  DKPLRGLRPADIAILVRDGKEAQAVRQQLSARGVRSVYLSDKDSVFVAQEAHDLLSWLKA 624

Query: 437  IFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              +        A    +   L                  ++  RG +  +    +  ++ 
Sbjct: 625  CAEPDSERTLRAALACITLDLPLAELERLNQDELAWEQRVMQFRGYRAVWRSQGVLPMLR 684

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +        +        E      + L + + Q    L   +        +L++S  
Sbjct: 685  RLLHDFALPQTLM--TRTDGERVLTNLLHLSELLQQAAAELDGEQALIRHLGDHLALSGQ 742

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-- 611
                    Q + L+   +L  +    + K L      +    S    +            
Sbjct: 743  AGE----EQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDAD 798

Query: 612  ------LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                  L   E +  + +       L  L   L   +     G+ +      +      S
Sbjct: 799  GNSQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNASNSMLHRS 858

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             +           +         ++A G   + +       +    A R    L+ L   
Sbjct: 859  ALGYLLGGDVLLAESAELKVWLRDLAQGCDAIAWQPVPEPTDERFSAPRNEAALVKLLVP 918

Query: 726  DFFDN---------LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
                            + G        +   + +       +   P   +    S  +I 
Sbjct: 919  KRRAAENWWIASYSALRIGDTVTTGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIH 978

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836
            +    P        L L++  +            L   +     ++        ++  ++
Sbjct: 979  RFPRGPNPGTFLHGL-LEWAGNEGFALTAHTPELLRDAVARRCSRRGWAGWIDTLSDWLQ 1037

Query: 837  QIID--------------SHFEKENLPPHIDIIWRH-------LFHKISHSFLEHEEKIQ 875
             +++                 ++ N        W             +   F        
Sbjct: 1038 HMLNMPLRLSPDATPVALDELDQPNQYRIEMEFWFASNNVNVAQMDALVRRFT------H 1091

Query: 876  SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA------ 929
            ++  +        +++        GF D     + G   + DYK+      +TA      
Sbjct: 1092 NNAPRAATE---TVSLNG---MFKGFIDLTFEHE-GRYYVADYKSNWLGTDDTAYTELAM 1144

Query: 930  -----QKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKID 972
                     D Q  L   AL     +++      + +    Y+ L+    + 
Sbjct: 1145 ETAILDNRYDLQYVLYLLALHRQLKARMADYDYDQHMGGALYLFLRGSRSVS 1196


>gi|114331347|ref|YP_747569.1| exodeoxyribonuclease V, beta subunit [Nitrosomonas eutropha C91]
 gi|114308361|gb|ABI59604.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Nitrosomonas
            eutropha C91]
          Length = 1228

 Score = 48.4 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 71/847 (8%), Positives = 208/847 (24%), Gaps = 107/847 (12%)

Query: 231  IIAGSTGSIPATARLMSTVANH---PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
            +I     + P   R+   +       N   ++   D       +      +         
Sbjct: 399  LIDEFQDTDPVQYRIFEYIYEISSNRNDCALILIGDPKQAIYAFRGADIHTYLKARRAVE 458

Query: 288  YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
               +   +  +    +           +V N+   R   + ++        +        
Sbjct: 459  GRLYTLNTNFRSTQAM--VDAVNHCFASVENQADSRGAFLFRTGDGNPVPFLEVQANGRR 516

Query: 348  KIPNIQKCFSDVALIEADNEREEA----------ISIAIALRMSLDE------------- 384
                I+       L+    ++ E              A  +   L++             
Sbjct: 517  DTFQIEGETLPAMLLAVSAQQMELSKTDYIEQMSALCATRIVDWLNDGKSAKAGFAGQDM 576

Query: 385  ------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                      + L+      A   +  L R   ++ +S    +  T  ++ +   L A  
Sbjct: 577  SFRAVRPGDIAILVNNGNEAANIRQALLQRGVRSVYLSDKDTVYATRQATEVHRWLAACA 636

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLS---RAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            + ++   +   +          E        A    +++  +G +  +    +  ++   
Sbjct: 637  EPDNDRLLRAALSTTSLGLTLAELDALNTDEAAWEAQVIQFKGYRELWQKQGVLPMLRRI 696

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            +   K    +   +  L+ +  E  +  + H+ + +               + ++     
Sbjct: 697  LVDFKCGDRLLALKENLNGQSGERILTDLLHLAEILQQ------------ASFTLEGEHA 744

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
            L     + +   E          E    L  + +     G       + +I I   + + 
Sbjct: 745  LIRFLAEQIAAPEGEADSKKLRLESDSDLVKVVTIHKSKGLEYPLVFLPFICITRPIKNS 804

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
            +      +   TL I       ++    L     +         +  +L+      + L 
Sbjct: 805  DIPLKWHDDQGTLKISLAAHPEIMARADLERLREDVRKLYVALTRACYLTW-----MGLA 859

Query: 676  TAEKYIGQAAHDFEMANGTRHLIY-------------------------TRSLRENNIPT 710
              +       H F +                                    +   +  P 
Sbjct: 860  PIKNKSSAVGHLFRLKATPAEQYLDALQSFVQERPDFCVTDKPDNNLEQYVAETRSAPPG 919

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
             A R L+ +        +  L+  G        + D    +   +       +  QP + 
Sbjct: 920  EACRPLRMVRENWRISSYSALRVDGNVPSTRIAQEDTPQAENLLEEQLERSFISLQPVSE 979

Query: 771  SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
              + +       +   A   + L  +  +  +   T   +   ++   + ++   ++   
Sbjct: 980  QPASVTI---HHFFKGAEAGIFLHELMEWVANTGFTIVSSDETDLRDTIERRCKMRHWET 1036

Query: 831  INHLMKQIIDSHFEKENLPP--HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA- 887
                +   +              I +    +       + E      + ++   +     
Sbjct: 1037 WVAPLVDWVKRMLSTSLPFGSIGICLNTLTVVKAEMEFWAEASNVDLTLLDAAVIEQTLA 1096

Query: 888  -----KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG---------DNPKKETAQKL- 932
                  +    +   L GF D +     G   + DYK+               +   +  
Sbjct: 1097 SRPRPHLTQSELNGMLKGFIDLVFQY-DGRYYVADYKSNWLGATDQDYTVAAMDEVIRAN 1155

Query: 933  -IDPQLSLEAAALKAGSFSQIDC----RKVANLFYIRLKQ-KFKIDCITNDKKKYSADEL 986
              D Q  +   AL     S++      + V     + ++        +  ++   +  + 
Sbjct: 1156 RYDLQYVIYLFALHRLLKSRLPDYNYEQHVGGAACLFVRGIDAPTAGVHFERPPGTLMDT 1215

Query: 987  SEKSLKN 993
             ++    
Sbjct: 1216 LDELFAG 1222


>gi|84625870|ref|YP_453242.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae MAFF
            311018]
 gi|84369810|dbj|BAE70968.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae MAFF
            311018]
          Length = 1355

 Score = 48.4 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 77/740 (10%), Positives = 158/740 (21%), Gaps = 41/740 (5%)

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
            I G  G    T    +  A               +  AI     +   +        + H
Sbjct: 481  IYGFRGGDVRTYLAAAVTAEPAPPLSHNFRSRPGVLAAIDALYAQAGYSDAFLTDGIAFH 540

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
            P  +  K +D    +         +           + +         +       +   
Sbjct: 541  PVQAGTKRVDADLQRDGATAPALTLWRAPEPPPPSDAAAAKTKQAGKPKPWSAGRARELA 600

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
               C + +    A      A   A  +           A++      A R++  L   GI
Sbjct: 601  TAACVAAIRGWLAGGRDGTATINARPV------QAGDIAVLVRSHGEATRIQQALGAVGI 654

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA---K 468
                +    L  T  +  L +LL A+    D   +   +   L                +
Sbjct: 655  PAVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGEDAIAIAALERDGER 714

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
            +          +  +      +L+ D  AT            R      +LA LL +   
Sbjct: 715  HRRWQQQALDWRERWQRGGPLALIGDLGATHGQRLLALVDGERRLTNYLQLAELLQEADA 774

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTK-LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            + + P                  D  +    +  + V +    K   L +         +
Sbjct: 775  RALGPHCLVDWLLRRIANADDNDDAQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGI 834

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
                   G     +A +    +   +D +       +++        ++RLL        
Sbjct: 835  GRSDKGAGRHCVVHAPDSGRQLHWKMDRDDPTWSAAEAAWKQEQRAEDARLLYVGLTRAE 894

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT------RHLIYTR 701
                                M   L+        G    D                    
Sbjct: 895  HALWIASGPFHQHERTALAGMLRALDALQGAAGEGAVVVDTSTPPAHLPRLPPPREAQVP 954

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT----TKQPHYKRP 757
              R          W+     L   D            +  +   D               
Sbjct: 955  PARNPQRHIAPEWWVYSFTQLANADAGAATDPMASATVVGSGGSDEPSGSEAVAVAVGTD 1014

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHNII 816
                        +            +A +                  +   RG       
Sbjct: 1015 AEPFDPRFAGNRFGVVMHDVFERCDFAAWQVWRPGQPAPDGQAAPILEALQRG------- 1067

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEK---ENLPPHIDIIWRHLFHKISHSFLEHEEK 873
                +  ++     +  L+   +     +    ++P             +  + +E    
Sbjct: 1068 -GYAQDELDDGLAMLTALIGHTLTVALPEGRLADVPEPQRRNEMEFHFAMRPTRVEALLA 1126

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------K 926
            +      +             G+ +TG  D +     G   + DYK+   P        +
Sbjct: 1127 LLHRFGVVGDRQAFGARQRLEGL-MTGLID-LTYTVDGRWYVLDYKSNRLPSYDADALAR 1184

Query: 927  ETAQKLIDPQLSLEAAALKA 946
              A      Q  +   AL  
Sbjct: 1185 AMAHSEYALQALIYTVALHR 1204


>gi|300741869|ref|ZP_07071890.1| putative ATP-dependent DNA helicase (UvrD/REP) [Rothia dentocariosa
           M567]
 gi|300381054|gb|EFJ77616.1| putative ATP-dependent DNA helicase (UvrD/REP) [Rothia dentocariosa
           M567]
          Length = 648

 Score = 48.4 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 65/595 (10%), Positives = 153/595 (25%), Gaps = 71/595 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA +E+R                 +SLG V  +  T              
Sbjct: 106 QRVMALTFTTRAAEEMRLRL--------------RSLGAVGVQTRTFHSAA--------- 142

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                  L +L   W + +     D+       L    A  + ++ +   ++  I  E  
Sbjct: 143 -------LRQLRYFWPSAIGGSFPDIVK-HKAGLITEAAQRLRMSVD-RALVRDIAAE-I 192

Query: 165 KWEDLHALKNEKYGMWWL-------LAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217
           +W  +     +              +    +    + + +   E N        +  +  
Sbjct: 193 EWAKVSLFTPDTLTPHLHQRNLPSGITPQNMVRLFRSYEDLKDERNLIDFEDVLLLTVGI 252

Query: 218 EAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
             +       ++      ++       P   RL+       +   V+   D       + 
Sbjct: 253 IEDDDALAATIREQYRHFVVDEYQDVSPLQQRLLDAWLGERDDLCVV--GDASQTIYSFT 310

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
             T +                Y  A  +      R   + +   +  +  R      +  
Sbjct: 311 GATSRHLLEFPRR--------YRGAHTVRLTRDYRSHSQVVELANRLLAARRPRPDSTE- 361

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS--- 389
                    +     K+ + +    +       ++  EA  IA  ++  L+++   +   
Sbjct: 362 --------FSWAPPLKLISQRGPGVESQWFGYTDDEREAEGIAEQIQDLLEKDGVPASEI 413

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND-FMAIAT 448
           A++      +  ++  L   GI   +                  L A  K  D    +  
Sbjct: 414 AVLFRTNGQSGLLEAALADRGIPYQLRGAEQFFDRPEIKQAMLALRASAKSTDGSENVPR 473

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
            V+  L   G+ EK    A    +         S  +  L+   ++ IA  +        
Sbjct: 474 YVREVLESLGYTEKAPQSAGAVRQKWESLAAIVSM-VDHLEDTRIEDIAQAEAAGAPVPH 532

Query: 509 QSRLSEEDKELAVLLVDHILQCITP--LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
           +  + +    LA  L       +    L +  + K      + +    +  +        
Sbjct: 533 RLTVHDVVATLAHRLATQDAPVMEGVTLASLHSAKGLEWDAVFLCGLNEGLMPITFAQTS 592

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
           DE  +   L++    +    L+    ++ +            +  +         
Sbjct: 593 DEIDEERRLFYVGITRARKYLWFTWSDSRTAGGRGKRRRSRFLDDIDPSRQSARH 647


>gi|296139998|ref|YP_003647241.1| exodeoxyribonuclease V [Tsukamurella paurometabola DSM 20162]
 gi|296028132|gb|ADG78902.1| Exodeoxyribonuclease V [Tsukamurella paurometabola DSM 20162]
          Length = 1110

 Score = 48.4 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 67/821 (8%), Positives = 162/821 (19%), Gaps = 146/821 (17%)

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
             +L           +    A   ++     +++     + P    ++    +     +++
Sbjct: 242  DDLQGLLREALVDEVHGEAACSRLRELYSVVLVDEFQDTDPVQWDILHAAFHGHRTLVLV 301

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
               D       +        +   ++   +TH    + +  D   +             +
Sbjct: 302  --GDPKQAIYAFRGAEVY--SYLEASKAATTHQALDVNRRSDGPLVTALQHLYGDVALGD 357

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                   +S +   P  +                K    +  +    +       +  +R
Sbjct: 358  TQIVVGPVSAARTTPRLAGRPLRLRYLGSNGVGPKTQYGIPRVPGVRKAVLRDVASDIVR 417

Query: 380  ------------MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
                               +  A++         ++  L   G+    + G  + TT  +
Sbjct: 418  ALDAGEELDDGGEPRTVEPRDIAVLVRKNEHIAELQSLLQGLGVAAVAAGGASVFTTAAA 477

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
            +    LL A+               PL +F   +               RG++   +I  
Sbjct: 478  TDWLRLLQALENAGRADRARLAALTPLFEFTARDLD------------ERGDELVSEISG 525

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                +    A            +    + + L  +  +     +T L             
Sbjct: 526  RLRTLAGVFARSGFAAMFDVLAAGSRFDARLLGRIGGER---TLTDLRHVAELVQHATVT 582

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            L +           +                        L +     G       + +  
Sbjct: 583  LGLGLGAATRWLAERIADPGLGGTADPARRLATDTQAVQLMTVHASKGLQFPIVYLPFAW 642

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                           E    L  +G  ++                               
Sbjct: 643  DSFGGFGDRDTFIFHENGERLVDVGGKDAHGYEA-------------------------- 676

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRL----LVL 722
                L +   E    +    +  A      L+   +       +   R L        V 
Sbjct: 677  ---RLAISRDEDAAEELRLLYVGATRAQSRLVLWWAPSATTKGSPLHRLLFSEVGGGRVP 733

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI------- 775
             G        + G    +W   ++ +          P P     P     S         
Sbjct: 734  AGQAPIPRDDEAGARLREWAAPVESSVSIEAVDPAAPAPEQWRPPFAGFPSLELGRATRR 793

Query: 776  --KQLINDPYAVYARRILK---------------LDFIPHFKKDPDRTD----------- 807
                     Y+                              ++  D              
Sbjct: 794  IDPSWRRTSYSALVADAAHGPLAAPDTGSEPDVEDRADEPVEEPADSATTAPDAPPSLMN 853

Query: 808  -------RGTLFHNIITELIKKRINKNTPEINHLMKQ----------------------- 837
                    G L H I+  +     +     +                             
Sbjct: 854  GLSGGTVFGNLVHEILEHVDTGAPDIAAEVLARCRAAAEFGTTADDPADVAAALTAVLHT 913

Query: 838  -----------IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                       + +            ++           +  +  E+     + +     
Sbjct: 914  PLGTGELSTLTLAEVAPADHLAEMDFELPLADTGSATLGTIADLLERHLPDGDPLAPYAS 973

Query: 887  AKMAIESIGIH--LTGFADRIDLLKSG---FVDITDYKTGD 922
                +    +   LTG  D +  +++G      I DYKT  
Sbjct: 974  RLREVPGAALRGFLTGSIDSVLRVRTGAADRFVIVDYKTNR 1014


>gi|319943538|ref|ZP_08017820.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Lautropia
            mirabilis ATCC 51599]
 gi|319743353|gb|EFV95758.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Lautropia
            mirabilis ATCC 51599]
          Length = 1490

 Score = 48.4 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 73/791 (9%), Positives = 165/791 (20%), Gaps = 116/791 (14%)

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA---LIEADNEREEA 371
             V+     R +           S +R  +   +      +  S V    +    N   EA
Sbjct: 695  EVTAREIARLLQAGADGQAGFASPVRLAEQPGHAGEGDSRRVSGVRPADIAVLVNSGREA 754

Query: 372  ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
             ++  ALR    +  +   L   +   A  V   L R+       A   L      + L 
Sbjct: 755  DAVRKALRA---QGIRSVYLSEDESVYASPVVPPLLRWLQAAAEPASGRLLRAALGTALC 811

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-----------GNK 480
             L     +      +    +    +              +  +              G +
Sbjct: 812  GLDALQLERLVHDELHWEARVAQFQRYREIWRSQGVLPMVRHMLQDFGVVPRLLAQGGER 871

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT---- 536
               D++ L  L+       +    +  +     +  +         +      +      
Sbjct: 872  QLTDLLHLSELLQQASTRLEGEHALVRYLQEQRDAPEGEREARRQRLESDDARVRVVTVH 931

Query: 537  -------------YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                         +           ++  W                 +       E    
Sbjct: 932  KSKGLEYPLVFLPFFCAVRPVEAKDALLRWHDADGQLRLVPGRSADDETVAAADAERLGE 991

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                    +          +  ++ + R   G  +    E      +   L+ ++  +  
Sbjct: 992  DLRKLYVALTRARHATWVGLGALENLHRSAAGHLLGLSGESGDGHRLFAALQEQVEQWRE 1051

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK------------YIGQAAHDFEMA 691
             I  G+         A       + Q+ L   +                +   +      
Sbjct: 1052 GIAPGVLAVEEASLPADGHGDGDMAQAALWSPSERTSGRGAVAWKTPPMLPGQSWPRWWI 1111

Query: 692  NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
                 L         +     S       V    D        G  +       +     
Sbjct: 1112 ASYSALEVEDVATTLSESDSPSDRRVHETVAVHGDAERAKPVTGDGWEPGRNVDESDAPY 1171

Query: 752  PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                    +    A    +    ++       AV      K                GT 
Sbjct: 1172 GDSALTDTWAEQRAADAVWQRHLVQAAEASALAVVDSEQGKGGLGSSVHDFARGPQAGTF 1231

Query: 812  FHNIITELIKKRINKNTPEINHLMKQIIDSH--FEKENLPPHIDIIWRHLF--------- 860
             H ++    ++       +   L +Q+               +   W             
Sbjct: 1232 LHGLLEWAGRQGFAALAKDPARLAEQVRWRLQRMPDWQPWQSLLTDWLVRLLTQPLPLDA 1291

Query: 861  ---HKISHSFLEHEEKIQS------------SIEKIFVNIPAKMAIESIGIH-------- 897
                +I  +  E                    + +  V +   +A++ I +         
Sbjct: 1292 GGRDRIQGNVEEALVGAGPVPLGGTSSFTLAGLRQYQVEMSFMLAVQDIDLPALDAWVRQ 1351

Query: 898  -------------------LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL------ 932
                               L GF D +   + G   + DYK+      + A +       
Sbjct: 1352 HTFSGAARPPLLPGQLNGMLKGFIDLVFEHE-GRFHVLDYKSNWLGASDEAYRGETMQAA 1410

Query: 933  -----IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ-KFKIDCITNDKKKYS 982
                  + Q      AL      ++      R V    Y+ L+        +   +   +
Sbjct: 1411 VLAHRYELQYLFYLLALHRLLKVRLPDYDYDRHVGGALYLFLRGSGALSRGVFAARPNRA 1470

Query: 983  ADELSEKSLKN 993
              E  + +   
Sbjct: 1471 VIEALDAAFAG 1481


>gi|182439973|ref|YP_001827692.1| putative type-I PKS [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178468489|dbj|BAG23009.1| putative type-I PKS [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 5343

 Score = 48.4 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 86/716 (12%), Positives = 170/716 (23%), Gaps = 26/716 (3%)

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
             EF       S   P I  +  V  E   AD   +      V + +R +  A  + + R 
Sbjct: 774  EEFSREIAGLSFEAPQIPVVSTVTGEVAGADFGSAAY---WVEHARRPVRFADAVGVARG 830

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
                +  ++ P+  LS  +       +A  L    D   T       LH    +     W
Sbjct: 831  LGVRVWAEVGPQPALSAALDVREGEVVASFLRRDRDQATTLLTGLSRLHVHGVDVVWDSW 890

Query: 182  L----LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
            +     + D    A +     L     S       A      E + +   G + + G T 
Sbjct: 891  VPRGTDSVDLPTYAFQRRRYWLEGSARSVVGSDVDASTAEFWEAVERNDLGALGLDGDTP 950

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHI---PTAIWNTITEKSTNITSSNTTYSTHPQY 294
            S      +++           L GL  H+   P       T   T      +        
Sbjct: 951  SDRVL-PVLTEWRRGRREHHALAGLRYHVTWKPVPQPADTTPFLTGTWLVVSHDED-VSV 1008

Query: 295  SLAKLLDFLDIKREDVKRLGNV-SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
             L  L+D L  + E +          +  R   ++++  P                    
Sbjct: 1009 PLVALVDGLGARAELLIVEPGTGRAALADRLRAVAENAEPLAGVVSALALPGGAAPGEWH 1068

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
                ++AL++A  +      +    R ++         +      A      +       
Sbjct: 1069 ATADNLALVQALGDTGATAPLWCLTRGAVGTGTDDP--VRDPEAAAVWGLGRVAALEHPD 1126

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
                 I L     +S+   L + +           +    +             ++  E 
Sbjct: 1127 RWGGLIDLPADPDASVYQRLGHVLT-GATGEDQIAVRATRMLACRLRRATAPALRDEPEW 1185

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                    +     L   V  R+A +     V   +        +     ++ +   +T 
Sbjct: 1186 SPGGSTLITGGTGALGGHVARRLAERGAEHIVLLSRQGPDAPGADDLRRDLEALGSRVTV 1245

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL---FSK 590
                 + +      ++         T +    + +   L  L  E     L +       
Sbjct: 1246 RACDISRRADVAEAIAAVPAAHPLTTVVHAAAVLDDAPLSALTPERLASVLDAKATSARY 1305

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            + E    +   +         ++           ++ L  L           T I  G  
Sbjct: 1306 LDELTRDLPLASFVLFSAFGGVLGSAGQGNYAAANAVLDALADQRRAAGLPATAIAWGAW 1365

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP- 709
             G      +    L          +        AA    + +G  H++          P 
Sbjct: 1366 AGDGMAARSAATVL---RLRRTGARPMAPERALAALGRALGDGETHVLVADVDWSRFTPA 1422

Query: 710  ---TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
                  S  L  L    G    +                         +R      
Sbjct: 1423 YTAARPSMLLADLPDARGASVPNGAPAADGTGPALPEAARRLAALSGSERHAAVLD 1478


>gi|318040198|ref|ZP_07972154.1| UvrD/REP helicase [Synechococcus sp. CB0101]
          Length = 1204

 Score = 48.4 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 58/650 (8%), Positives = 141/650 (21%), Gaps = 32/650 (4%)

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNG-AIVLPGLDCHIPTAIWNTITEKSTNIT 282
                   +I     + P   R++      P    +++   D       +      +    
Sbjct: 389  AQRYRAALIDEFQDTDPIQWRILQRAFTGPGSNHLLVMVGDPKQAIYRFRGGELATYRQA 448

Query: 283  SSNTTYSTHP---QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +++ +        + S A L+  L+        L  +            +  L  D + +
Sbjct: 449  AASASERYGLIENRRSSAALVAGLNALMRPGLVLSELDVPEVEAQANKGELLLGADETPL 508

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
            +   +   ++ +         L        E   +                L+    + A
Sbjct: 509  QLLPVEPAQLESRVAALCQAVL--------ERRLVLRQGASERVLEPVDLCLLVGRHSQA 560

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
              ++  L +  +   + +   +  T+ ++ L  LL+A+    D      L   PL  +  
Sbjct: 561  ESLRAALEQRQLPSRLVSRGDVFETVGATALQRLLDALASPGDPGRQRLLAASPLLGWSA 620

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
             E                  +      DL                     +    +    
Sbjct: 621  EELQA-----------SPPERWDQLAADLSQWAQQLPRLGLTGVLAELLAADGLAQLSLR 669

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
               L D         +  +   +   G ++ +DW +      +     +     +   + 
Sbjct: 670  GRALADLQQ---AAELVQEQMHSQGLGAVAAADWLRNLRLQEER-DPPDTHLCRSDAAQS 725

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI-LGTLESRL 638
                ++   SK +E    I     +              +     S +  + L       
Sbjct: 726  AIAVVTVHRSKGLEYPVVICPYLWKAPAPAKAGGQRLGRRWLPPDSPSPRLDLHLNPYWG 785

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG---QAAHDFEMANGTR 695
                        +    +  A            L    A++       +    +      
Sbjct: 786  PGRTAARQDHQAQLQEAERLAYVACTRAQHLLVLAWPGADQAEAGNPLSPWLEQPELAAL 845

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY-TTKQPHY 754
            H I    L     P         L +        + +     Y  W         +    
Sbjct: 846  HPIDPAELPPPKRPWTPDPEQGALELGPTPSRSLDSRWGRASYSAWAHAGAALPPQAQDE 905

Query: 755  KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
             R              +               A             +  ++ D G L HN
Sbjct: 906  GRDSDALNPADDSDAAAAPATPSSSWPALGPLAAFPRGSGPGDALHRMLEQLDFGELAHN 965

Query: 815  IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
                            ++  +   +          P    +       ++
Sbjct: 966  PEASRPLLLQELERAGLDAELIDPLLDGLVHLVQSPLGGALGACRLMDLA 1015



 Score = 38.7 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 91/964 (9%), Positives = 209/964 (21%), Gaps = 138/964 (14%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL------------ 75
             LV     +   PL +  + +   T  A  ELR            +L            
Sbjct: 33  AHLVLRLLSEGRAPLAVEQLLVVTFTDAAAAELRDRIARRLQDALQLLEPGSSATPGDAP 92

Query: 76  -----------------------------PIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
                                          I ++            L +          
Sbjct: 93  LAAWLEALGPNPPALLRGRLLLALEQLDRADITTIHGFCRRTLQRQALEAGLGPAVSLES 152

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
           +     A L+  + ++    +            +SP     L  +L      +  +    
Sbjct: 153 EGRERRAELVHDYWSRQVLPLPAGLLAGLRQKQVSPEQLAGLLGSLDGD-PALALDPLPL 211

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR---AEAEHLM 223
                L  +   +W  L   F +   +       +L A++     + L            
Sbjct: 212 ASDTPLAPQLEALWPQLWQRFQQEWQERSEALEEDLAAAASELNSLGLPYKPFRLKAKPD 271

Query: 224 KGTKGPIIIAGSTGSIPATARLMS-------TVANHPNGAIVLPGLDCHIPTAIWNTITE 276
           K  +    + G TG+      L            +    A V  G    +P         
Sbjct: 272 KLQRVQAWLDGLTGTPSYQEVLSQSDLLGYFHPGSFCKVAAVAHGEAVPLPQRPLLEAIA 331

Query: 277 KSTNITSSNTTYS--------------THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
              +  +                       Q    +LL+ LD   +       +      
Sbjct: 332 ALVDGPAELALLHFAHWGRSELLRRRERSGQMGFGQLLEALDPGPDASSPSPLLEAVAQR 391

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKI---------PNIQKCFSDVALIEADNEREEAIS 373
               +   F   D    R                   + ++        E      +A +
Sbjct: 392 YRAALIDEFQDTDPIQWRILQRAFTGPGSNHLLVMVGDPKQAIYRFRGGELAT-YRQAAA 450

Query: 374 IAIALRMSLDENKKKSALITADRNLAR----------RVKLELTRFGINIDISAGIPLST 423
            A      ++  +  +AL+     L R                   G  +  +   PL  
Sbjct: 451 SASERYGLIENRRSSAALVAGLNALMRPGLVLSELDVPEVEAQANKGELLLGADETPLQL 510

Query: 424 TLH------SSILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                    S +       + +       A   +++             + +  A     
Sbjct: 511 LPVEPAQLESRVAALCQAVLERRLVLRQGASERVLEPVDLCLLVGRHSQAESLRAALEQR 570

Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
              ++        +++    +    +    P    R         +      LQ   P  
Sbjct: 571 QLPSRLVSRGDVFETVGATALQRLLDALASPGDPGRQRLLAASPLLGWSAEELQASPPER 630

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
             +   + +     +       V           +         + +  + L  + + + 
Sbjct: 631 WDQLAADLSQWAQQLPRLGLTGVLAELLAADGLAQLSLRGRALADLQQAAELVQEQMHSQ 690

Query: 596 SCIKANAIEWIDIITRLIDGETVK----PKIEKSSTLFILGTLESRLLNFDTLILGGL-- 649
                 A +W+  +    + +             S + ++    S+ L +  +I   L  
Sbjct: 691 GLGAVAAADWLRNLRLQEERDPPDTHLCRSDAAQSAIAVVTVHRSKGLEYPVVICPYLWK 750

Query: 650 ------------------NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
                              +   P+            ++        +        +   
Sbjct: 751 APAPAKAGGQRLGRRWLPPDSPSPRLDLHLNPYWGPGRTAARQDHQAQLQEAERLAYVAC 810

Query: 692 NGTRHLIYTRS--LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY----------- 738
              +HL+        +       S WL++  +              +             
Sbjct: 811 TRAQHLLVLAWPGADQAEAGNPLSPWLEQPELAALHPIDPAELPPPKRPWTPDPEQGALE 870

Query: 739 ------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                      +    +           PP        S +      +D  A  A     
Sbjct: 871 LGPTPSRSLDSRWGRASYSAWAHAGAALPPQAQDEGRDSDALNPADDSDAAAAPATPSSS 930

Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH-FEKENLPPH 851
              +      P  +  G   H ++ +L    +  N      L+ Q ++    + E + P 
Sbjct: 931 WPALGPLAAFPRGSGPGDALHRMLEQLDFGELAHNPEASRPLLLQELERAGLDAELIDPL 990

Query: 852 IDII 855
           +D +
Sbjct: 991 LDGL 994


>gi|302343614|ref|YP_003808143.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
 gi|301640227|gb|ADK85549.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
          Length = 946

 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 58/508 (11%), Positives = 108/508 (21%), Gaps = 64/508 (12%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
             L              + + +   T++A +EL      +  + +       +   +  E
Sbjct: 492 RLLTARAARLVAGGGDASRLLLVTFTRKAAEELGQRLATLGLEAA----RTHTFHGLGLE 547

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
             T          P +   QR  E+        +  P  +          L   P   + 
Sbjct: 548 ILT----DHLGRRPAIVADQRREEILSQAAKAVDLPPGQVDWAISRLKQRLDQRPEPTLA 603

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            A                               WL     L          L   +    
Sbjct: 604 PA-------------------------------WLAYEQALAA-----EGLLDLDDLPRQ 627

Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
               +A   A A     G    I++     + P    L+  +A        +   D    
Sbjct: 628 AALALAQDGALAGRWS-GKFDHILVDEYQDANPVQVALLRRLAAGGALVAAI--GDPDQA 684

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +             +             L          V     +     GR    
Sbjct: 685 IYGFRGAERALFADFGRDFAG-----ARSFDLRRNYRSSGRIVAAATALMAAEAGREAYA 739

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
            ++  P                           L   D+ + EA + A     S   +  
Sbjct: 740 PQAVNPAGPLVECFEAADPQAEAIWLAQRVVELLGGLDSRQVEAGAGA----RSQGFSAG 795

Query: 388 KSALITADRNLARRVKLELTRFGINIDISA------GIPLSTTLHSSILTSLLNAIFKLN 441
             A++      A  +   L R G    ++A        PL        L S+  A     
Sbjct: 796 DIAVLYRLHAQAEPIAQALARVGAPTQVAATAHLAELDPLDLRAQRVKLLSMHAAKGLEF 855

Query: 442 DFMAIATLVKH--PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
             + +  L +   P    G         +  L +   R  +  +       ++       
Sbjct: 856 PVVFVVGLEEGLLPYQPPGKDAADPDEERRLLYVAMTRARQRLFLSRCCWRMLFGESRRP 915

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHI 527
             +         L    K  A      +
Sbjct: 916 GRSPFWADLPGELLVAHKSKARRRARQL 943


>gi|124516145|gb|EAY57653.1| conserved protein of unknown function [Leptospirillum rubarum]
          Length = 324

 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 76/288 (26%), Gaps = 57/288 (19%)

Query: 767  PRTYSFSEIKQLINDPYAVYARRI--LKLDFIPHFKKDPDR----------TDRGTLFHN 814
              +YS S+  Q        +  R                +              G   H 
Sbjct: 7    RFSYSLSQGSQFRTCERQYWFSRYGSWGGWEREASPLAREAYRLKKLTNRYLWTGNRVHE 66

Query: 815  IITE---LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI------------------- 852
             I E    ++     +  ++   + + +   F      P                     
Sbjct: 67   AIRETLEFLRSGAQPDPGDVREQLLRRLREDFRGSRDHPRKTPGPKNKVLLLEHEDPESA 126

Query: 853  --DIIWRHLFHKISHS---FLEHEEKIQ-------SSIEKIFVNIPAKMAIESIGIHLTG 900
              D  W+ +  +   +   F   E   Q       S +    V       + S+   +  
Sbjct: 127  VSDQQWKSVVERALSAIDGFFRSEALRQIQKNGYSSLLRNDDVLESMDAEVASLHFPVFV 186

Query: 901  FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960
              D       G + I D+KTG   K    ++    QL L A   K     +++  ++   
Sbjct: 187  TIDIALETPDG-ILILDWKTGKPEKSGNHEE----QLGLYALFSKEK--WKVESSRIRFA 239

Query: 961  -FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007
              Y+             ++    A E      K   EI++ + + E+ 
Sbjct: 240  PVYLSYTPDRLDVSPVTEEMLGLASENIRSMAK---EILSRIDDPERG 284


>gi|19552005|ref|NP_600007.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389668|ref|YP_225070.1| DNA helicase RECQ [Corynebacterium glutamicum ATCC 13032]
 gi|21323545|dbj|BAB98172.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325003|emb|CAF19484.1| PUTATIVE DNA HELICASE RECQ [Corynebacterium glutamicum ATCC 13032]
          Length = 678

 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 68/599 (11%), Positives = 147/599 (24%), Gaps = 77/599 (12%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T RA  E+R     + G         ++      ++            P    
Sbjct: 53  RVLAVTFTSRAAGEMRHRL-NLMGIGGV---QARTFHAAARKQLLYFWPQVAGNLP---- 104

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                   RL+      +   ++    ES           I  AK        + T E+ 
Sbjct: 105 -------WRLLDNKFQLVGRAVRGARLESQTEKVRDILGEIEWAKA------SLITPEQY 151

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-------E 218
            + L               A+ +    + +                + L  A        
Sbjct: 152 PDRLGTRTPP-------APAEKIAEVYQRYENMKATPEGMLLDFDDLLLHTAGALENSPA 204

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +      ++       P   R++       +   V+   D +     +   T + 
Sbjct: 205 VAEEFRQQYRSFVVDEYQDVTPLQQRVLDAWLGDRDDLTVV--GDANQTIYSFTGATPEF 262

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
               S       +P+ ++ KL                           ++          
Sbjct: 263 LLNFSRK-----YPEATVVKLQRDYRSTP------------------QVTALANTVIGQA 299

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADR 396
                    ++  ++    +      D+E  EA  +A  +   L       + A++    
Sbjct: 300 RGRVAGTRLELQGMRIAGPEPEFSAFDDEPTEAREVAGRILTLLKNGVQASEIAVLYRIN 359

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSS-ILTSLLNAIFKLNDFMAIATLVKHPLA 455
             +   +  L   GI   +  G    T       L+ L+    +  D   +  L +  L 
Sbjct: 360 AQSAVFEQALADAGIVYQVRGGEGFFTRPEIRQALSQLIRTSQRDVDESDLVRLTQRTLV 419

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                          L      G +       L +LV       K    +      L   
Sbjct: 420 PL------------GLSSEEPSGAQERERWQSLNALVDLVKDLVKATPDLDLTGLLLKLR 467

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD--WTKLTVTCLQNVCLDEHRKLP 573
           +++ A          +  L   K  +      + + D            +  ++E R+L 
Sbjct: 468 ERQEAKHPPTVEGVTLASLHAAKGLEWDAVFLVGLVDSTLPISHAIKSGDEAIEEERRLF 527

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
            +      + L   ++   + G         ++D I   +  E+  P+  +     + G
Sbjct: 528 YVGVTRAREHLHCSWALARQEGGRKSRKRSRFLDGIVVEMASESGTPRSNRPKNCRVCG 586


>gi|318056797|ref|ZP_07975520.1| putative NRPS-type-I PKS fusion protein [Streptomyces sp. SA3_actG]
          Length = 3137

 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 62/691 (8%), Positives = 135/691 (19%), Gaps = 7/691 (1%)

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179
              +L      L    P     S   A  LA+ LAD  + I         L     E    
Sbjct: 1401 HQELAGHRGKLVDLDPARATASDEAATLLAEFLADDEEEIGLRGATRATLRLRPAEDRLT 1460

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
              L                            +    R                A    S 
Sbjct: 1461 GPLPPRLRPDGTYLVTGAFGALGRLLCRTLVRRGARRLVLLGRTPLPPRAAWRATDPDSR 1520

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA-K 298
               A  +         ++VL  +D     A +                   H    +   
Sbjct: 1521 AGQAIALVRDIEALGASVVLAPVDLT-DEAAFTGWLATYRAGDPPPLRGVFHLAGQVRDT 1579

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
            LL  +D +  D       +        +  +            + +      N     + 
Sbjct: 1580 LLADIDREAFDTVHAPKTAGAHLLDKHLRDEPLEHFVLFASVASLLTTAGQTNYAAGNAF 1639

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
            +  +          ++A+          ++  L     +      L        ++   G
Sbjct: 1640 LDALAHRRRAAGLPALALDWGPWATGMIEELGLEAHYLHSRGMSSLSPDAGMSVLERVLG 1699

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
              L+  L  + +      +   +   A+   +          ++    A         R 
Sbjct: 1700 QDLAQ-LVVATVVDWRTFLAWYDTPPALVQDLAASAGDQAADDEGDLLAAFRAAGPEERR 1758

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
               +     L + VL     + +           S    EL       +      +    
Sbjct: 1759 ALVTERFTRLVAAVLRAAPEEIDPAGGLGALGLDSLLAMELRARSQAELGVAPPVVALLS 1818

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                +        + T+       +          +       +   +L+          
Sbjct: 1819 NTPVAELATRLHEELTERLARDELSGAQVTVELWDDDGDFPLTQNQKALWFLKQLNPDGH 1878

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
              N    +++   L    T        +    L T            +G   E       
Sbjct: 1879 AYNIGGAVEVRAVLDPELTFAAVRRLVARHPALRTGFHLREGRPVQRIGDGREPDLGWFD 1938

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT---RHLIYTRSLRENNIPTIASRW 715
             +      + +  ++   A   +   A            R +I        +       +
Sbjct: 1939 VEGQEWEEIKERIIHEYRARYDLEHDALFRFRLFRRGPDRWVIMKAVHHIVSDAVSTFTF 1998

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            ++ LL +                  +   L+   K                        +
Sbjct: 1999 IEELLEVYEALKEGREPALAPVPARYVDFLNQQNKFLASPEAARMRDYWRDHLPAEVPLL 2058

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
              L  D      +            +     
Sbjct: 2059 -DLPTDRPRPAVQTHNGASEFFVLDEALSAR 2088


>gi|322505550|emb|CAM43045.2| membrane associated protein-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1471

 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 55/819 (6%), Positives = 147/819 (17%), Gaps = 5/819 (0%)

Query: 72   STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            +++LP + S  +    +  A+           + ++R  E  RL      +   + +   
Sbjct: 322  ASLLPALHSTEEQARLERHAEEERLARAAEEQARLERHAEEERLARAAEEEQARLERHAE 381

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
             E            +        +      E+ + E     +            +     
Sbjct: 382  EERLARAAAEEQARLKRHAEEERL-ARAAEEQARLERHAEEERLARAAEEQARLERHAEE 440

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +       E         +  L RA  E                 +             
Sbjct: 441  ERLARAAAEEQARLKRHAEEERLARAAEEQARLERHAEEECLARAAAEEQARLKRHAEEE 500

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                A                                      +  +         E+  
Sbjct: 501  RLARAAEEQARLERHAEEERLARAAAEEQARLERHAEEERLARAAEEQARLERHAEEERL 560

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                       R     +     +          E ++    +  + +     +     A
Sbjct: 561  ARAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARA 620

Query: 372  ISIAIALRMSLDENKKKSALITADRNLARR-VKLELTRFGINIDISAGIPLSTTLHSSIL 430
             +   A      E ++ +        L R   +  L R                  +   
Sbjct: 621  AAEEQARLERHAEEERLARAAEEQARLERHAEEECLARAAAEEQARLKRHAEEERLARAA 680

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
                       +        +         E+         +    R  +        + 
Sbjct: 681  EEQARLERHAEEERLARAAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARAAEE 740

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                     +        + +   E       L     +    L  +   +         
Sbjct: 741  EQARLERHAEEERLARAAEEQARLERHAEEERLARAAAEEQARLERHAEEERLARAAAEE 800

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC---IKANAIEWID 607
                +      +     E +       EEE    ++     +E  +    +   A E   
Sbjct: 801  QARLERHAEEDRLARAAEEQARLQRHAEEERLARAAEEQARLERHAEEERLARAAAEEQA 860

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
             + R  + E +    E+ + L      E      +       +        A        
Sbjct: 861  RLERHAEEERLARAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARAAEEQARLE 920

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
              ++           QA  +                          R  +          
Sbjct: 921  RHAEEERLARAAEEEQARLERHAEEERLARAAAEEQARLERHAEEERLARAAEEEQARLK 980

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                ++R     +   +L+   ++    R         +                   +A
Sbjct: 981  RHAEEERLARAAEEQARLERHAEEERLARAAEEQARLQRHDEEERLARAAEEQARLERHA 1040

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                        +   +R            E  +   +     +    ++        E 
Sbjct: 1041 EEERLARAAEEEQARLERHAEEERLARAAAEQARLERHAEEERLARAAEEQARLERHAEE 1100

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                     +    + +          + +  +      
Sbjct: 1101 ERLARAAAEQARLERHAEEERLARAAEEQARLERHAEEE 1139



 Score = 46.8 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 60/813 (7%), Positives = 167/813 (20%), Gaps = 14/813 (1%)

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                 A+       +     + R  E    +     +          ++ L         
Sbjct: 404  RLARAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARAAAEEQARLKRHAEEERL 463

Query: 146  IWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERL 199
               A+  A +    E E            L     E+           L+  ++      
Sbjct: 464  ARAAEEQARLERHAEEECLARAAAEEQARLKRHAEEERLARAAEEQARLERHAEEERLAR 523

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  + +       R       +                     +   A     A   
Sbjct: 524  AAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARAA 583

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
                     A    +   +                  A        +  + +RL   + E
Sbjct: 584  EEQARLERHAEEERLARAAEEQARLERHAEEERLARAAAEEQARLERHAEEERLARAAEE 643

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                     +  L    ++ +       +   + +   + A +E   E E     A   +
Sbjct: 644  QARLERHAEEECLARAAAEEQARLKRHAEEERLARAAEEQARLERHAEEERLARAAAEEQ 703

Query: 380  MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
              L+ + ++  L  A    AR  +                 L        L        +
Sbjct: 704  ARLERHAEEERLARAAEEQARLERHAEEERLARAAEEEQARLERHAEEERLARAAEEQAR 763

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
            L        L +    +    E++    + A      +     +   D  +   +  A  
Sbjct: 764  LERHAEEERLARAAAEEQARLERHAEEERLARAAAEEQARLERHAEEDRLARAAEEQARL 823

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
            + +           E+ +       + + +                     ++       
Sbjct: 824  QRHAEEERLARAAEEQARLERHAEEERLARAAAEEQARLERHAEEERLARAAEEQARLER 883

Query: 560  CLQ--NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              +   +      +       EE +   +   +        +       +     ++   
Sbjct: 884  HAEEERLARAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARAAEEEQARLERHA 943

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
             + ++ +++                          +      +    +   Q+ L     
Sbjct: 944  EEERLARAAAEEQARLERHAEEERLARAAEEEQARLKRHAEEERLARAAEEQARLERHAE 1003

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
            E+ + +AA +                 E           +RL      +     +   + 
Sbjct: 1004 EERLARAAEEQARLQRHDEEERLARAAEEQARLERHAEEERLARAAEEEQARLERHAEEE 1063

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             L          ++   +        E         E +            R  + + + 
Sbjct: 1064 RLARAAAEQARLERHAEEERLARAAEEQARLERHAEEERLARAAAEQARLERHAEEERLA 1123

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
               ++  R +R    H     L +    +      H  ++ +     ++           
Sbjct: 1124 RAAEEQARLER----HAEEERLARAAEEEQARLERHAEEERLARAAAEQA--RLERHAEE 1177

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                + +      E   +           A++ 
Sbjct: 1178 ERLARAAEEQARLERHAEEERLARAAEEQARLE 1210


>gi|226228979|ref|YP_002763085.1| hypothetical protein GAU_3573 [Gemmatimonas aurantiaca T-27]
 gi|226092170|dbj|BAH40615.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 403

 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 58/213 (27%), Gaps = 27/213 (12%)

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
               P          +     +        R +L                 G++FH ++ 
Sbjct: 1   MTPLPEPLVQCRVPATFSPSQLAFGEQCLLRAVLGSTRDLPTLTAHPAAALGSVFHKLLE 60

Query: 818 ELIKK------RINKNTPEINHLMKQIIDSHFE----------KENLPPHIDIIWRHLFH 861
             ++          ++       +    D+             +E  PP +    R +  
Sbjct: 61  LAVRGEIPRTGTPGEDAERTLDRLLDAEDARLAAMRPGDPPRLREVFPPLMWRRKRRVVL 120

Query: 862 KISHSFLEHEEKIQSSIEKIFVNIP---------AKMAIESIGIHLTGFADRIDLLKSGF 912
            ++  +L       ++                  A++ IE   + L G AD I     G 
Sbjct: 121 DLAEKYLSGAVPRAATSSGGGARNARDLHQNGGWAEVQIEVPALRLWGRADMIQRTA-GD 179

Query: 913 VDITDYKTGDNPKKE-TAQKLIDPQLSLEAAAL 944
           V I D KTG     +      I+ Q+ L  A  
Sbjct: 180 VVIRDLKTGRVVTNDGDVLPHIERQMRLYGAMA 212


>gi|38233332|ref|NP_939099.1| putative DNA helicase II [Corynebacterium diphtheriae NCTC 13129]
 gi|38199592|emb|CAE49248.1| Putative DNA helicase II [Corynebacterium diphtheriae]
          Length = 683

 Score = 48.0 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 65/643 (10%), Positives = 159/643 (24%), Gaps = 71/643 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T+RA  E+R     +           ++       +            P    
Sbjct: 53  RVLAVTFTRRAAGEMRHRLGLMGVGGV----QAQTFHSAALRQLRYFWPQVAGNLP---- 104

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                   R++    + +    + +  ES         + I  AK               
Sbjct: 105 -------WRIVDNKFSLVGRATRSVGVESSTENVRDLLSEIEWAKA----------ALIT 147

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-------RAE 218
            ++     N +      +AA+ +    + + +              + L         A 
Sbjct: 148 PDNYVERLNGRKTP---VAAEKVAEVYRRYEQSKTTPEGMLLDFDDLLLHTAGAIENSAA 204

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +      ++       P   R++       +   V+   D +     +   +   
Sbjct: 205 IAEEFRQQYRTFVVDEYQDVTPLQQRVLDAWLGERDDVTVV--GDANQTIYSFTGASPDY 262

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
               S       +P  ++ KL                           I+          
Sbjct: 263 LLGFSRK-----YPHATVVKLQRDYRSTP------------------QITDLANRVIDQA 299

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADR 396
           +        ++  ++         E  +E  EA ++A+ ++  L +     + A++    
Sbjct: 300 VGRIAGTRLELEGMRTAGPQPEFQEFSDEPAEAHAVALKIKQLLAQGVPASEIAILYRIN 359

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
             +   +  L   GI   +  G             S +    + +D      +    + +
Sbjct: 360 AQSATFEQALDDAGIVYQVRGGEEFFQRSEIKQAMSEIIRTTQRDDLPDARGVDLERIVR 419

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                         L      G +       L++L    +   +    +       +   
Sbjct: 420 AILAPL-------GLSKHEPEGARARERWQSLEALAELSLEIGQATPDLNLQGLLAALNQ 472

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD--WTKLTVTCLQNVCLDEHRKLPN 574
           +  A          +  L   K  +      + + D            +  ++E R+L  
Sbjct: 473 RASAKHPPTMQGVTLASLHAAKGLEWDAVFLVGLVDGTLPISHAMKAGDHAIEEERRLFY 532

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +      + L   ++K  + G         ++D I   +D  +V P+ ++     + GT 
Sbjct: 533 VGVTRAREILYCSWAKARQEGGRATRKRTRFLDSIVPELDVSSVPPRSKRRQRCRVCGTT 592

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
            +               GV  +              +LN+   
Sbjct: 593 LNSPAERIVGRCDQCPSGVDGEVFETLRKWRADTARELNVPAY 635


>gi|154343315|ref|XP_001567603.1| membrane associated protein-like protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1471

 Score = 48.0 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 55/819 (6%), Positives = 147/819 (17%), Gaps = 5/819 (0%)

Query: 72   STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            +++LP + S  +    +  A+           + ++R  E  RL      +   + +   
Sbjct: 322  ASLLPALHSTEEQARLERHAEEERLARAAEEQARLERHAEEERLARAAEEEQARLERHAE 381

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
             E            +        +      E+ + E     +            +     
Sbjct: 382  EERLARAAAEEQARLKRHAEEERL-ARAAEEQARLERHAEEERLARAAEEQARLERHAEE 440

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +       E         +  L RA  E                 +             
Sbjct: 441  ERLARAAAEEQARLKRHAEEERLARAAEEQARLERHAEEECLARAAAEEQARLKRHAEEE 500

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                A                                      +  +         E+  
Sbjct: 501  RLARAAEEQARLERHAEEERLARAAAEEQARLERHAEEERLARAAEEQARLERHAEEERL 560

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                       R     +     +          E ++    +  + +     +     A
Sbjct: 561  ARAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARA 620

Query: 372  ISIAIALRMSLDENKKKSALITADRNLARR-VKLELTRFGINIDISAGIPLSTTLHSSIL 430
             +   A      E ++ +        L R   +  L R                  +   
Sbjct: 621  AAEEQARLERHAEEERLARAAEEQARLERHAEEECLARAAAEEQARLKRHAEEERLARAA 680

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
                       +        +         E+         +    R  +        + 
Sbjct: 681  EEQARLERHAEEERLARAAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARAAEE 740

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                     +        + +   E       L     +    L  +   +         
Sbjct: 741  EQARLERHAEEERLARAAEEQARLERHAEEERLARAAAEEQARLERHAEEERLARAAAEE 800

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC---IKANAIEWID 607
                +      +     E +       EEE    ++     +E  +    +   A E   
Sbjct: 801  QARLERHAEEDRLARAAEEQARLQRHAEEERLARAAEEQARLERHAEEERLARAAAEEQA 860

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
             + R  + E +    E+ + L      E      +       +        A        
Sbjct: 861  RLERHAEEERLARAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARAAEEQARLE 920

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
              ++           QA  +                          R  +          
Sbjct: 921  RHAEEERLARAAEEEQARLERHAEEERLARAAAEEQARLERHAEEERLARAAEEEQARLK 980

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                ++R     +   +L+   ++    R         +                   +A
Sbjct: 981  RHAEEERLARAAEEQARLERHAEEERLARAAEEQARLQRHDEEERLARAAEEQARLERHA 1040

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                        +   +R            E  +   +     +    ++        E 
Sbjct: 1041 EEERLARAAEEEQARLERHAEEERLARAAAEQARLERHAEEERLARAAEEQARLERHAEE 1100

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                     +    + +          + +  +      
Sbjct: 1101 ERLARAAAEQARLERHAEEERLARAAEEQARLERHAEEE 1139



 Score = 46.5 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 60/813 (7%), Positives = 167/813 (20%), Gaps = 14/813 (1%)

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                 A+       +     + R  E    +     +          ++ L         
Sbjct: 404  RLARAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARAAAEEQARLKRHAEEERL 463

Query: 146  IWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERL 199
               A+  A +    E E            L     E+           L+  ++      
Sbjct: 464  ARAAEEQARLERHAEEECLARAAAEEQARLKRHAEEERLARAAEEQARLERHAEEERLAR 523

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  + +       R       +                     +   A     A   
Sbjct: 524  AAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARAA 583

Query: 260  PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
                     A    +   +                  A        +  + +RL   + E
Sbjct: 584  EEQARLERHAEEERLARAAEEQARLERHAEEERLARAAAEEQARLERHAEEERLARAAEE 643

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
                     +  L    ++ +       +   + +   + A +E   E E     A   +
Sbjct: 644  QARLERHAEEECLARAAAEEQARLKRHAEEERLARAAEEQARLERHAEEERLARAAAEEQ 703

Query: 380  MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
              L+ + ++  L  A    AR  +                 L        L        +
Sbjct: 704  ARLERHAEEERLARAAEEQARLERHAEEERLARAAEEEQARLERHAEEERLARAAEEQAR 763

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
            L        L +    +    E++    + A      +     +   D  +   +  A  
Sbjct: 764  LERHAEEERLARAAAEEQARLERHAEEERLARAAAEEQARLERHAEEDRLARAAEEQARL 823

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
            + +           E+ +       + + +                     ++       
Sbjct: 824  QRHAEEERLARAAEEQARLERHAEEERLARAAAEEQARLERHAEEERLARAAEEQARLER 883

Query: 560  CLQ--NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              +   +      +       EE +   +   +        +       +     ++   
Sbjct: 884  HAEEERLARAAEEQARLERHAEEERLARAAEEQARLERHAEEERLARAAEEEQARLERHA 943

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
             + ++ +++                          +      +    +   Q+ L     
Sbjct: 944  EEERLARAAAEEQARLERHAEEERLARAAEEEQARLKRHAEEERLARAAEEQARLERHAE 1003

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
            E+ + +AA +                 E           +RL      +     +   + 
Sbjct: 1004 EERLARAAEEQARLQRHDEEERLARAAEEQARLERHAEEERLARAAEEEQARLERHAEEE 1063

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
             L          ++   +        E         E +            R  + + + 
Sbjct: 1064 RLARAAAEQARLERHAEEERLARAAEEQARLERHAEEERLARAAAEQARLERHAEEERLA 1123

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
               ++  R +R    H     L +    +      H  ++ +     ++           
Sbjct: 1124 RAAEEQARLER----HAEEERLARAAEEEQARLERHAEEERLARAAAEQA--RLERHAEE 1177

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                + +      E   +           A++ 
Sbjct: 1178 ERLARAAEEQARLERHAEEERLARAAEEQARLE 1210


>gi|330941258|gb|EGH44122.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. pisi
            str. 1704B]
          Length = 1230

 Score = 48.0 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 94/908 (10%), Positives = 214/908 (23%), Gaps = 105/908 (11%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A      +    + +   +   + L   
Sbjct: 271  FEKLAAWAADDTQEALDLGTGFTRLTPEGIAEAWKSEPPVHPAFEAMAQMKAALDGLPKP 330

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++   W+ A        +    R  E+     +    A +          L++  
Sbjct: 331  DAAVLQHAAQWVSAR------FEEEKRRRAEMGFDDMLLRLDAALHGAGGERLATLIREQ 384

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  ++           +    D       +      +     
Sbjct: 385  FPVALIDEFQDTDPVQYRIFDSIYRLEANDEQTGLFLIGDPKQAIYAFRGADIYTYLRAR 444

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T    H   +  +    +      V        +  G  +   +       SD     
Sbjct: 445  QATDGRWHTLDTNYRSSHTMVESVNHVFTRAEQREQGRGAFLFRDEHGNQVPFSDALAQG 504

Query: 344  ILENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK-------- 387
              E    +     +  V  +++D         ++ A S A  +   L+  ++        
Sbjct: 505  RKETLHVDGAPLTALTVWHLQSDQPVSGVVYRQQLAASCASEIVRLLNAGQQGSAGFVTP 564

Query: 388  ----------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                        A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A
Sbjct: 565  DNTLRGLRPADIAILVRDGKEAQAVRQQLTARGVRSVYLSDKDSVFAAQEAHDLLSWLKA 624

Query: 437  IFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              +        A    +   L                  ++  RG +  +    +  ++ 
Sbjct: 625  CAEPDSERTLRAARACITLDLPLAELERLNQDELAWERRVMQFRGYRAIWRSQGVLPMLR 684

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +        +        E      + L + + Q    L   +        +L++S  
Sbjct: 685  RLLHDFALPQTLM--TRNDGERVLTNLLHLSELLQQAAAELDGEQALIRHLGDHLALSGQ 742

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-- 611
                    Q + L+   +L  +    + K L      +    S    +            
Sbjct: 743  AGE----EQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDAD 798

Query: 612  ------LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                  L   E +  K +       L  L   L   +     G+ +             S
Sbjct: 799  GKSQISLQPTEALIQKADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNANTSMLHRS 858

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             +           +         ++A G   +         +    A R    L+ L   
Sbjct: 859  ALGYLLGGGAVPAESAELNVWLRDLAQGCEAIALQPVPEPTDERFSAPRNEAALVKLLVP 918

Query: 726  DFFDN---------LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
                            + G        +   + +       +   P   +    S  +I 
Sbjct: 919  KRRAAENWWIASYSALRIGDTVTAGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIH 978

Query: 777  QLINDPYAVYARRIL-----------KLDFIPHFKKDPDRT--DRG-----TLFHNIITE 818
            +    P        L                   +    R    RG         + +  
Sbjct: 979  RFPRGPNPGAFLHGLLEWAGNEGFAMTAHAPEKLQDAVARRCNRRGWAGWINTLSDWLQH 1038

Query: 819  LIKKRINKNTPEINHLMKQIID--SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
            ++   +  +       + ++     +  +       + +       +   F         
Sbjct: 1039 MLNMPLRLSPDAAPVALGELDQPNQYRVEMEFWFASNNVNVAQMDALVRRFTHDNAPR-- 1096

Query: 877  SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936
                        +++        GF D     + G   + DYK+      ++A      Q
Sbjct: 1097 ----AATE---TVSLNG---MFKGFIDLTFEHE-GRYYVADYKSNWLGSDDSAYT----Q 1141

Query: 937  LSLEAAAL 944
            L++E A L
Sbjct: 1142 LAMETAIL 1149


>gi|58584093|ref|YP_203109.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae
            KACC10331]
 gi|58428687|gb|AAW77724.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae
            KACC10331]
          Length = 1366

 Score = 48.0 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 77/740 (10%), Positives = 158/740 (21%), Gaps = 41/740 (5%)

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
            I G  G    T    +  A               +  AI     +   +        + H
Sbjct: 490  IYGFRGGDVRTYLAAAVTAEPAPPLSHNFRSRPGVLAAIDALYAQAGYSDAFLTDGIAFH 549

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
            P  +  K +D    +         +           + +         +       +   
Sbjct: 550  PVQAGTKRVDADLQRDGATAPALTLWRAPEPPPPSDAAAAKTKQAGKPKPWSAGRARELA 609

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
               C + +    A      A   A  +           A++      A R++  L   GI
Sbjct: 610  TAACVAAIRGWLAGGRDGTATINARPV------QAGDIAVLVRSHGEATRIQQALGAVGI 663

Query: 412  NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA---K 468
                +    L  T  +  L +LL A+    D   +   +   L                +
Sbjct: 664  PAVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGEDAIAIAALERDGER 723

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
            +          +  +      +L+ D  AT            R      +LA LL +   
Sbjct: 724  HRRWQQQALDWRERWQRGGPLALIGDLGATHGQRLLALVDGERRLTNYLQLAELLQEADA 783

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTK-LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            + + P                  D  +    +  + V +    K   L +         +
Sbjct: 784  RALGPHGLVDWLLRRIANADDNDDAQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGI 843

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
                   G     +A +    +   +D +       +++        ++RLL        
Sbjct: 844  GRSDKGAGRHCVVHAPDSGRQLHWKMDRDDPTWSAAEAAWKQEQRAEDARLLYVGLTRAE 903

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT------RHLIYTR 701
                                M   L+        G    D                    
Sbjct: 904  HALWIASGPFHQHERTALAGMLRALDALQGAAGEGAVVVDTSTPPAHLPRLPPPREAQVP 963

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT----TKQPHYKRP 757
              R          W+     L   D            +  +   D               
Sbjct: 964  PARNPQRHIAPEWWVYSFTQLANADAGAATDPMASATVVGSGGSDEPSGSEAVAVAVGTD 1023

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHNII 816
                        +            +A +                  +   RG       
Sbjct: 1024 AEPFDPRFAGNRFGVVMHDVFERCDFAAWQVWRPGQPAPDGQAAPILEALQRG------- 1076

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEK---ENLPPHIDIIWRHLFHKISHSFLEHEEK 873
                +  ++     +  L+   +     +    ++P             +  + +E    
Sbjct: 1077 -GYAQDELDDGLAMLTALIGHTLTVALPEGRLADVPEPQRRNEMEFHFAMRPTRVEALLA 1135

Query: 874  IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------K 926
            +      +             G+ +TG  D +     G   + DYK+   P        +
Sbjct: 1136 LLHRFGVVGDRQAFGARQRLEGL-MTGLID-LTYTVDGRWYVLDYKSNRLPSYDADALAR 1193

Query: 927  ETAQKLIDPQLSLEAAALKA 946
              A      Q  +   AL  
Sbjct: 1194 AMAHSEYALQALIYTVALHR 1213


>gi|282855692|ref|ZP_06265000.1| ATP-dependent DNA helicase [Pyramidobacter piscolens W5455]
 gi|282586471|gb|EFB91731.1| ATP-dependent DNA helicase [Pyramidobacter piscolens W5455]
          Length = 360

 Score = 48.0 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/358 (8%), Positives = 80/358 (22%), Gaps = 33/358 (9%)

Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
             A++T  R+    ++   +  G+    + G             +L   +    D  A+A
Sbjct: 35  DMAVLTPTRSSYENLQRAFSLCGVPAAFTGGRSFYARPEIRDACALCAFLADPRDRTALA 94

Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             +  P +     +                  +           +  +   +  ++ +  
Sbjct: 95  GFLCSPFSGLPLADVQALLPFLDRGEPLKTLAERWPGPAAKLRALARQAMLEGPSSALAS 154

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
             +R               +      +   +  +       S +       + L+    D
Sbjct: 155 LLARGDCLKSVHPKRRAAALANLRRAVALLEAYEAGVAP--SPAGVAAYLRSALRRGAAD 212

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                             +      +T   +  +A + ++     + G     +      
Sbjct: 213 PE----------------ASAEAGGDTVKVMTIHASKGLEFPLVAVFGLEHGGRAGAREK 256

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
             +               L              +  L +V      L    +Y  +    
Sbjct: 257 GVVPSRH-----------LLAAAPRFPDNWPEGDCLLGKVHAR---LDERAEYEERTRLY 302

Query: 688 FEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           +      R  LI    +          R L  +   GG       +   +    W R+
Sbjct: 303 YVALTRARDGLILCGLMPGGEKRAEKDRSLLSIERAGGEFVPAPGEVSRREADAWLRR 360


>gi|209965327|ref|YP_002298242.1| UvrD [Rhodospirillum centenum SW]
 gi|209958793|gb|ACI99429.1| UvrD [Rhodospirillum centenum SW]
          Length = 1178

 Score = 48.0 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 84/844 (9%), Positives = 206/844 (24%), Gaps = 62/844 (7%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
           ++     T +A +E+R     + G                    T    +          
Sbjct: 88  NILTVTFTNKAAREMRERVEALVG------------------VPTEGWWMGTFHALAARI 129

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++R  EL  L   +     D    L  +  L    +  +  W A+ L   I+  + +   
Sbjct: 130 LRRHAELVGLKPSFTILDTDDQIRLLKQ--LMEAENIDSKKWPARVLLGAIERWKDKALT 187

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH---- 221
            + L                  L    + + +RL+ LNA       +  +    +H    
Sbjct: 188 PDRLKREDAGDMAG------GRLIDLYRQYQDRLLSLNACDFGDLLLHNIALFQKHNDVL 241

Query: 222 -LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +     I++     +  A    +  +A        +   D  +       + + S  
Sbjct: 242 REYQDRFRYILVDEYQDTNVAQYLWLRLLAQAHRNICCVGDDDQCLVAGTLIRMADGSER 301

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVK---------RLGNVSNEMYGRSMVISKSF 331
              +                    + R   +          L + +  +          +
Sbjct: 302 PIETVGAGDAVLSARGGGACGASVVSRTYARSYSGDLVTVELEDGTRLVSTPEHRHFAGY 361

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSAL 391
               T  +  T ++  +    +   S     +          +   LR   +       L
Sbjct: 362 RLGVTPQLYFTYLMHKRGYGFRLGTS-----QTYTRARIEPVLGYELRCRQEHADAVWVL 416

Query: 392 ITADRNLARRVKL---ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL---NDFMA 445
                    R       L          A    ST       + L     +        A
Sbjct: 417 AVHGSENEARFLEYTLSLDYGIPTFPFVARKGGSTAGLVHDQSILDRLFKERPTETAGEA 476

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
           + T          +  +  +  +  + +     N+ +  +  +  +  D        +  
Sbjct: 477 VLTRFGLSRDYPHYRPQAHTGRRRNVTVTLCGDNRAAAALHRISVIGSDPDDAAVLASLG 536

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
              +              +  + + +  +   +   +     +    +         ++ 
Sbjct: 537 LSIRPSKKSNPGWRYETAMADLGRIMATVEQIRRAFDGDVALVQFGRFGAG-GEAGTDLD 595

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                    L               +I  GS     A+   D    ++     +P +   
Sbjct: 596 PGPAPDDGELLTAAPAPARVRSSLPMIPAGSVRPGMAMFRADGGLAIVRSVRTEPGVATV 655

Query: 626 STLFILGTLESRL---LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
             + +  T        +  +++      E         +   +RV++ + N ++    +G
Sbjct: 656 HDIDVSRTHNFIANGIITHNSIYGWRGAEVGNILRFDHDFTGARVIRLEQNYRSTAHILG 715

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
            A        G         +       +   W          D  + L+++G       
Sbjct: 716 AAHGIIANNQGRLGKQLWTEVDGGEKVRVRGLWDAEEEARWVGDEIEALQRKGLSLGQMA 775

Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
             +    +   ++       L  +         +Q I D  A Y R + + D    F++ 
Sbjct: 776 VLVRAGFQTREFEERFITLGLPYRVIGGPRFYERQEIRDALA-YLRIVAQPDDDLAFERI 834

Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
            +   RG +    + +L               + +      E + L   +    R L   
Sbjct: 835 INVPKRG-IGDATLRQLYVAARTLGVS-----LAEATWRLTETDELRGKVRSTLRALMED 888

Query: 863 ISHS 866
           I+  
Sbjct: 889 IARW 892


>gi|294624884|ref|ZP_06703540.1| exodeoxyribonuclease V beta chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
 gi|292600803|gb|EFF44884.1| exodeoxyribonuclease V beta chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
          Length = 1179

 Score = 48.0 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 79/796 (9%), Positives = 179/796 (22%), Gaps = 57/796 (7%)

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTVANHPNGA---- 256
             +    V + +   +A+A      T+  I ++     +      + S V      A    
Sbjct: 239  DDLVDGVAHALQGAQADALVKRLRTQYAIALVDEFQDTDDRQWSIFSNVFGEGPLAQAAG 298

Query: 257  ---IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
                +    D       +     ++    +     +    ++       L        + 
Sbjct: 299  LEPALFLIGDPKQAIYGFRGGDVRTYLAAAVTAELAPPLSHNFRSRPGVLAAIDALYAQA 358

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI-------EADN 366
            G     +                 +    D +      + +                A  
Sbjct: 359  GYADAFLTDGIAFHPVRAGTKRVDEDLQRDGVTAPALTLWRAPEPPPPAKGKPKPWSAGR 418

Query: 367  EREEAISIAIALRMSLDENKKK--------------SALITADRNLARRVKLELTRFGIN 412
             RE A +  +A         +                A++      A R++  L   GI 
Sbjct: 419  ARELATAACVAAIRGWLAGGRDGTATVCGRPVQAGDIAVLVRSHGEATRIQQALGAVGIP 478

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA---KN 469
               +    L  T  +  L +LL A+    D   +   +   L                ++
Sbjct: 479  AVAAGKQSLFATEEALELLALLQALLDPGDDSRLRAALATVLIGEDAIAIAALERDGERH 538

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                      +  +      +L+ +  AT            R      +LA LL +   +
Sbjct: 539  RRWQQQALDWRERWQRGGPLALIGELGATHGQRLLALVDGERRLTNYLQLAELLQEADAR 598

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTK-LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
             + P                  +  +    +  + V +    K   L +         + 
Sbjct: 599  ALGPHGLVDWLSRRIANADDNDEAQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIG 658

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                  G     +A E    +    + +       +++        ++RLL         
Sbjct: 659  RSDKGAGRHCVVHAPELGRQLHWKTERDDPSWSAAEAAWKQEQRAEDARLLYVGLTRAEH 718

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD---------FEMANGTRHLIY 699
                               M   L+        G    D            A     +  
Sbjct: 719  ALWIASGPFHQHERTALSAMLRALDALQGAAGEGTVVVDTSTPPAHLPRLPAPSEAQVPL 778

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
             R+ + +  P        +L         D +          + +   +           
Sbjct: 779  ARNPQRHIAPEWWVYSFTQLASADAGAATDPMASATVVGSGGSDEPSGSEAVAVAVATDA 838

Query: 760  FP-PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHNIIT 817
             P         +            +A +                  +   RG    + + 
Sbjct: 839  EPFDPRFAGNRFGVVMHDVFERCDFAAWQAWRPGQPAPDGQAAPILEALQRGGYAKDDLD 898

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            + ++      T  I H +   +       ++P             +  + ++    +   
Sbjct: 899  DGLRML----TALIGHTLTVALPEGTRLADVPEPQRRNEMEFHFAMRPTRVDALLALLHR 954

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL----- 932
               +             G+ +TG  D +     G   + DYK+   P    A        
Sbjct: 955  FGVVGDRQAFGARQRLEGL-MTGLID-LTYSVDGRWYVLDYKSNRLPSYAAAALARAMAH 1012

Query: 933  --IDPQLSLEAAALKA 946
               + Q  +   AL  
Sbjct: 1013 SEYELQALIYTVALHR 1028


>gi|115378874|ref|ZP_01466012.1| hypothetical protein STIAU_4106 [Stigmatella aurantiaca DW4/3-1]
 gi|310820060|ref|YP_003952418.1| hypothetical protein STAUR_2793 [Stigmatella aurantiaca DW4/3-1]
 gi|115364113|gb|EAU63210.1| hypothetical protein STIAU_4106 [Stigmatella aurantiaca DW4/3-1]
 gi|309393132|gb|ADO70591.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 322

 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 64/224 (28%), Gaps = 41/224 (18%)

Query: 809  GTLFHNIITEL---IKKRINKNTPEINHLMKQIIDSHFE--------------------- 844
            G++ H  + ++    +     +   +     +++   F                      
Sbjct: 63   GSVVHESLKDVLLDWRAGRTVDPQAVEARTHRLMQDDFRHSSKKSYWTQKYRKPFTGLVE 122

Query: 845  ---KENLPPHIDIIWRHLFHKISHSFLEHEE-KIQSSIEKI-FVNIPAKMA---IESIGI 896
                E +P                 F       +  S++   ++ + A          G+
Sbjct: 123  HEYAEAIPSEAWKQNWETVRSALAWFFASRWPALARSLKPAQWLEVDAGAEHSSFTLEGV 182

Query: 897  HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             +    D   + ++G   + D+KTG        ++  D Q+   A  L      +    K
Sbjct: 183  KVFAIPDFAYVDEAGSPVVVDWKTGR------VREGYDDQVLGYALYLSQ--RYKFPMEK 234

Query: 957  VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
            V     + L +  + +   +     +  E   +S+  +  ++  
Sbjct: 235  V-RAALVYLNEGLEQEVQVDPAAVEAFKERFSQSVAGMRGLLKD 277


>gi|111023344|ref|YP_706316.1| helicase [Rhodococcus jostii RHA1]
 gi|110822874|gb|ABG98158.1| helicase [Rhodococcus jostii RHA1]
          Length = 712

 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 58/517 (11%), Positives = 123/517 (23%), Gaps = 62/517 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA  E+R     +           ++       +              + 
Sbjct: 63  GQVLAVTFTARAAGEMRGRLRSLGIGDGGAQVQARTFHAAALRQLRYFW------PQVIG 116

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           + +      RL+      +      +   +        A+ I  AK              
Sbjct: 117 DTE-----WRLLDRKFAVVSSAAGRVGLSTSTESVRDLASEIEWAKA----------SLI 161

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIA--SKYWTERLVELNASSPVGYQIALMRAEAEHL 222
             ED      +      + AA   ++    +    R  +          +    A  EH 
Sbjct: 162 APEDYPRAVAKLRREAPVDAAKVAEVYHGYEQLKARGQDGMLLDFDDLLLHTAAALEEHS 221

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +      ++       P   R++       +   V+   D +     +   T  
Sbjct: 222 AVAEEFRDRYRCFVVDEYQDVTPLQQRVLDAWLGERDDLTVV--GDANQTIYSFTGATPN 279

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                S        P+ ++ +L        E V     V     GR              
Sbjct: 280 YLLDFSRRF-----PEATVVRLERDYRSTPEVVSMANRVIGAARGRIA------------ 322

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITAD 395
                     ++   +    + + +E D+E  EA  +A  ++  +       + A++   
Sbjct: 323 ------GTRLQLIGQRDSGPEPSFVEFDDEPAEAAGVARTIKRLIASGTPAAEIAVLYRI 376

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +   +  LT+  I   +  G    T        + L      +D           L 
Sbjct: 377 NAQSEVHEQALTKLDIPYQVRGGEGFFTRTEVRQAVAALRQAAGRDDLPDAVGADLVTLV 436

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
           +       L+ A          G +       L +LV         +  +          
Sbjct: 437 RAVLVPLGLTDA-------EPAGAQARERWSSLSALVALTEEQLTQDPELTLDALLRELS 489

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
            +  A          +  L   K  +      + ++D
Sbjct: 490 LRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLTD 526


>gi|325928637|ref|ZP_08189818.1| glutamine synthetase adenylyltransferase [Xanthomonas perforans
           91-118]
 gi|325540990|gb|EGD12551.1| glutamine synthetase adenylyltransferase [Xanthomonas perforans
           91-118]
          Length = 969

 Score = 47.6 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 84/741 (11%), Positives = 187/741 (25%), Gaps = 48/741 (6%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           ARL       L +   D +             A  +A + A +    + E + WE    L
Sbjct: 228 ARLGQQLARLLDETTADGFSHRVDLRLRPFGTAGRVALSFAGMDQYFQREGRDWERYAWL 287

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------ 226
           K             +L+    +   R ++  A   +    A + AE     +        
Sbjct: 288 KARAVAGDIDAGEAWLETLRPFVYRRYLDFTALDGLREMKAAITAEVARHDRLDDIKRGP 347

Query: 227 ----------KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                     +   +I G         RL+  +        +       + TA       
Sbjct: 348 GGIREIEFLAQSLQLIRGGREPSLRERRLLPALQALVAAGQIDQENGQALSTAYRFLRRL 407

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +      PQ  L +    L +   D   L +       R        L P  
Sbjct: 408 ENRLQMLRDAQTHALPQAPLDRERIALGLGYADWSALLDALAPQRTRVAAEFAELLAPRV 467

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                  + +      +   + +A I   +          AL      +  ++   +A  
Sbjct: 468 RATAPDALADYWRALPEGDAAPLAGIGLHDP----DGAHQALADFAQSSGVRALSDSARA 523

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L R +   L          A            +  LL A  +   ++A+          
Sbjct: 524 RLDRVMPALLHAATRASQPDA--------AVRRMLGLLQATLRRTSYLALLD-------- 567

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                  L+R  + L   AL   + +   + L  L+  RI+    +    H     + + 
Sbjct: 568 --EQPSALARLVDVLSRSALLAERLAAYPLLLDELLDTRISGPLPDRAALHAACAETLQI 625

Query: 517 KELAVLLVDHILQCIT-----PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            +    L +   + +       L T    + +      ++   +  V  + ++   +   
Sbjct: 626 DDTEAALRELNERRLALSFRIALATLDGRQQAVESTRQLAWLAEAVVQTVLHLARSDMLA 685

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                       +       +E G     + +   D    +   +  +P         + 
Sbjct: 686 AHGHVPGGSFAIVGYGSLGGLELGFGSDLDLVFLYDHPPEVDASDGKRPLEAGRWFARLA 745

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
             + + L            +     +  K   +S +       +         A      
Sbjct: 746 QKVMALLAAETGAGRLYDIDVRLRPDGGKGALVSSLASYRDYQRDRAWTWEHQA-----L 800

Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
              R +    +L +          ++        +    ++ R +  LD +       KQ
Sbjct: 801 VRARAVAGDAALCDAFAHVRRDTLMRVRDTAQSHEDVRKMRARMRAELDRSDAGRLDLKQ 860

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                      L+A     +  + + L           + +  ++P     P       L
Sbjct: 861 GAGGLVDLEFVLQAGVLGLAAQQPQLLDACDTPALIDALARTHWLPDESSAPLHQAHAAL 920

Query: 812 FHNIITELIKKRINKNTPEIN 832
               ++  + +R     P   
Sbjct: 921 VDAGLSCTLDRRPRLLAPTPA 941


>gi|38638032|ref|NP_943006.1| DNA helicase superfamily protein I [Ralstonia eutropha H16]
 gi|32527370|gb|AAP86120.1| putative DNA helicase superfamily I [Ralstonia eutropha H16]
          Length = 575

 Score = 47.6 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/334 (8%), Positives = 77/334 (23%), Gaps = 31/334 (9%)

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIPATARLMSTV 249
             + +   L               +       +       +++          +R   T 
Sbjct: 154 LYEAYQSALARNGKIDFQDMLRLAVAGMQSGTIAPYRMTYLLVDEYQDCDSLQSRW--TA 211

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
            +   G+IV    D       + +                             L      
Sbjct: 212 LHAAAGSIVTVVGDDDQSIYGFRSALGFRGMEAFIKE---------FDARSVILGKNYRS 262

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
              + +V++ +   +       L          +    +     +    V+ +EA     
Sbjct: 263 HAEILDVADRVIRNNEDRILKELVAHRGPGGAIEFKRLE----DEYKEAVSAVEALTPVL 318

Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
            A               K +A++     +   ++      G+    +AG  +     +++
Sbjct: 319 RA--------------GKTAAVLARTNRILDPLEAVCRSHGVKYYRAAGRSILDRPEAAL 364

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           +  LL  I K  D      L+          +   ++     E    R        +   
Sbjct: 365 MGDLLELIQKSKDSGT-DALLGFAGIGSHELQLLHTQTAAKPEGSIPRKKNLVQAGIAEA 423

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
           ++   R   +K       ++ +      +     
Sbjct: 424 TVDKYRDFLKKLAEWQALFERQFFSLVLDGVREW 457


>gi|145294942|ref|YP_001137763.1| hypothetical protein cgR_0888 [Corynebacterium glutamicum R]
 gi|140844862|dbj|BAF53861.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 678

 Score = 47.6 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 68/599 (11%), Positives = 147/599 (24%), Gaps = 77/599 (12%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T RA  E+R     + G         ++      ++            P    
Sbjct: 53  RVLAVTFTSRAAGEMRHRL-NLMGIGGV---QARTFHAAARKQLLYFWPQVAGNLP---- 104

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                   RL+      +   ++    ES           I  AK        + T E+ 
Sbjct: 105 -------WRLLDNKFQLVGRAVRGARLESQTEKVRDILGEIEWAKA------SLITPEQY 151

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-------E 218
            + L               A+ +    + +                + L  A        
Sbjct: 152 PDRLGTRTPP-------APAEKIAEVYQRYENMKATPEGMLLDFDDLLLHTAGALENSPA 204

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +      ++       P   R++       +   V+   D +     +   T + 
Sbjct: 205 VAEEFRQQYRSFVVDEYQDVTPLQQRVLDAWLGDRDDLTVV--GDANQTIYSFTGATPEY 262

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
               S       +P+ ++ KL                           ++          
Sbjct: 263 LLNFSRK-----YPEATVVKLQRDYRSTP------------------QVTALANTVIGQA 299

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADR 396
                    ++  ++    +      D+E  EA  +A  +   L       + A++    
Sbjct: 300 RGRVAGTRLELQGMRIAGPEPEFSAFDDEPTEAREVAGRILTLLKNGVQASEIAVLYRIN 359

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSS-ILTSLLNAIFKLNDFMAIATLVKHPLA 455
             +   +  L   GI   +  G    T       L+ L+    +  D   +  L +  L 
Sbjct: 360 AQSAVFEQALADAGIVYQVRGGEGFFTRPEIRQALSQLIRTSQRDVDESDLVRLTQRTLV 419

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                          L      G +       L +LV       K    +      L   
Sbjct: 420 PL------------GLSSEEPSGAQERERWQSLNALVDLVKDLVKATPDLDLTGLLLKLR 467

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD--WTKLTVTCLQNVCLDEHRKLP 573
           +++ A          +  L   K  +      + + D            +  ++E R+L 
Sbjct: 468 ERQEAKHPPTVEGVTLASLHAAKGLEWDAVFLVGLVDSTLPISHAIKSGDEAIEEERRLF 527

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632
            +      + L   ++   + G         ++D I   +  E+  P+  +     + G
Sbjct: 528 YVGVTRAREHLHCSWALARQEGGRKSRKRSRFLDGIVVEMASESGTPRSNRPKNCRVCG 586


>gi|333024875|ref|ZP_08452939.1| putative NRPS-type-I PKS fusion protein [Streptomyces sp. Tu6071]
 gi|332744727|gb|EGJ75168.1| putative NRPS-type-I PKS fusion protein [Streptomyces sp. Tu6071]
          Length = 3137

 Score = 47.6 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 61/691 (8%), Positives = 133/691 (19%), Gaps = 7/691 (1%)

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179
              +L      L    P     S   A  LA+ LAD  + I         L     E    
Sbjct: 1401 HQELAGHRGKLVDLDPARATASDEAATLLAEFLADDEEEIGLRGATRATLRLRPAEDRLT 1460

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
              L                            +    R                A    S 
Sbjct: 1461 GPLPPRLRPDGTYLVTGAFGALGRLLCRTLVRRGARRLVLLGRTPLPPRAAWRATDPDSR 1520

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA-K 298
               A  +          +VL  +D     A +                   H    +   
Sbjct: 1521 AGQAIALVRDIEALGANVVLAPVDLT-DEAAFTGWLATYRAGDPPPLRGVFHLAGQVRDT 1579

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
            LL  +D +  D       +        +  +            + +      N     + 
Sbjct: 1580 LLADIDREAFDTVHAPKTAGAHLLDKHLRDEPLEHFVLFASVASLLTTAGQTNYAAGNAF 1639

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
            +  +          ++A+          ++  L     +      L        ++   G
Sbjct: 1640 LDALAHRRRAAGLPALALDWGPWATGMIEELGLEAHYLHSRGMSSLSPDAGMSVLERVLG 1699

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
              L+  L  + +      +   +   A+   +          ++    A         R 
Sbjct: 1700 QDLAQ-LVVATVVDWRTFLAWYDTPPALVQDLAASAGDQAADDEGDLLAAFRAAGPEERR 1758

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
               +     L + VL     + +           S    EL       +      +    
Sbjct: 1759 ALVTERFTRLVAAVLRAAPEEIDPAGGLGALGLDSLLAMELRARSQAELGVAPPVVALLS 1818

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                +        + T+       +          +       +   +L+          
Sbjct: 1819 NTPVAELAARLHEELTERLARDEISGAQVSVELWDDDGDFPLTQNQKALWFLKQLNPDGH 1878

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
              N    +++   L             +    L T            +G   E       
Sbjct: 1879 AYNIGGAVEVRAVLDPELMFAAVRRLVARHPALRTGFHLREGRPVQRIGDGREPDLGWFD 1938

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT---RHLIYTRSLRENNIPTIASRW 715
             +      + +  ++   A   +   A            R +I        +       +
Sbjct: 1939 VEGQEWEEIKERIIHEYRARYDLEHDALFRFRLFRRGPDRWVIMKAVHHIVSDAVSTFTF 1998

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            ++ LL +                  +   L+   K                        +
Sbjct: 1999 IEELLEVYEALKEGREPALAPVPARYVDFLNQQNKFLASPEAARMRDYWRDHLPAEVPLL 2058

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
              L  D      +            +     
Sbjct: 2059 -DLPTDRPRPAVQTHNGASEFFVLDEALSAR 2088


>gi|302536762|ref|ZP_07289104.1| ATP-dependent DNA helicase [Streptomyces sp. C]
 gi|302445657|gb|EFL17473.1| ATP-dependent DNA helicase [Streptomyces sp. C]
          Length = 233

 Score = 47.6 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 63/231 (27%), Gaps = 32/231 (13%)

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
             +R +        P   S S++ +L  D  A      ++    P  K       +GT F
Sbjct: 14  ELRRARAAVRDVELPSALSASQLLRLAADEQAF-----VRDLARPMPKPPQPAARQGTRF 68

Query: 813 HNIITELIKKRINKNTPEINHLMKQI--IDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
           H  +     +       ++      +   D     E     +                  
Sbjct: 69  HAWVESRFDELPLPLLDDLLDPATDLPGSDQEVADEADLAALKA--------------AF 114

Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
           E    +      +  P ++ +      + G  D +     G  ++ D+KTG   + +   
Sbjct: 115 ERSEYAERTPHRMEAPVQLTLAGR--VIRGRIDAVYRNPDGSYEVVDWKTGRTTQADP-- 170

Query: 931 KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981
                QL++   A      +           ++ ++    I       ++ 
Sbjct: 171 ----LQLAVYRLAWAE---ATGTPLDRVTAAFLHVRSGRVIRPRDLPGRER 214


>gi|172060153|ref|YP_001807805.1| exodeoxyribonuclease V subunit beta [Burkholderia ambifaria MC40-6]
 gi|171992670|gb|ACB63589.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria MC40-6]
          Length = 1234

 Score = 47.6 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 88/905 (9%), Positives = 189/905 (20%), Gaps = 90/905 (9%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPI 230
            +   W  L AD+L  A     ER       S       L  A   H      ++      
Sbjct: 335  QRARWLALIADWLDTAPGELAERKRTRRVVSFDDLLANLYHALHAHPWLAETLRARYPAA 394

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT-------EKSTNITS 283
            +I     + P    + + +     G  +    D       +             S +   
Sbjct: 395  LIDEFQDTDPLQFAIFNRI--FAPGGPLFLVGDPKQAIYSFRAADLHTYLAARASASACY 452

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +           +     F           G     +   + V +      D     +  
Sbjct: 453  TLAVNQRSTPAIVDACNRFFMSNPRAFVLDGLDYYAVRAGTRVRAPFVDATDPGPAGDFR 512

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK------KSALITADRN 397
            I      +      D     A     E   +    R                A++     
Sbjct: 513  IWSLPGGDGTLLKRDAQAQAAQACAAEIARLMRGAREGHARLGDTPLSPGDIAVLVQTHR 572

Query: 398  LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
                VK  L  +GI     A   + +T  +  L  +L AI    D   + + +       
Sbjct: 573  QGSLVKRVLATWGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLRRLRSALAADWFGL 632

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN-------THVPHWQS 510
                 +     +         + ++   ++  S        +            +   + 
Sbjct: 633  DAGALWRMEQGDGDASREAADSADAMSWVERFSRYRLLWRERGFAVMWRTFTRELRIAER 692

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
             ++  D E  V  ++H+ +      + +     T   L+              +  D + 
Sbjct: 693  LMAGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGGGEEAQLRLESDRNL 752

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT----RLIDGETVKPKIEKSS 626
                   + +G   + +F   +  G   +  A    D                   E + 
Sbjct: 753  VQIVTVHKSKGLEYAVVFCPFLNDGGLREPPASGLPDAREYHDDAGDAVLHYGCDDEAAE 812

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
                    E        + +            A     SR  +            G    
Sbjct: 813  HAARQALREQAAERARLVYVALTRAVYRCYLVAGPYLSSRSTREARRSVLNWLVAGAGQS 872

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                 +         S  +       S     +          +   +       TR L 
Sbjct: 873  FDAWLDEPPDEAVLDSAWQALAGGPVSVAPLPVPARRERLAAGHDATQTLAARHATRVLR 932

Query: 747  YTTKQPH--------YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
               +            +       +           +  +  D   V A  +        
Sbjct: 933  DAWRMASFSSLTSSMAREEAGVAVVPDDELRPDHDALAAVAPDGAFVAADTVASEPPDDD 992

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
              + P     G   H +         +         +              P +      
Sbjct: 993  ILRFPRGAAAGECLHRLFELSRFTEPDSWYQAALGALHD------RPVEAEPELATRLPA 1046

Query: 859  LFHKISHSFLEHEE---KIQSSIEKIFVNIPAKMAIESIGIHL----------------- 898
            +  ++    +  E       + ++             +  + L                 
Sbjct: 1047 MMARLVDDVVRTELVPGMRLADLDPTRRLDEMGFLFPAPSLELGALRRLLVAHGYPDVAL 1106

Query: 899  ---------TGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLS 938
                      GF D I     G   I D+K+                   +      Q  
Sbjct: 1107 DSGMLAGFIKGFIDMILEH-DGRFWIVDWKSNHLGNTPDAYGPRALDVAMSDHAYHLQAL 1165

Query: 939  LEAAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            L   AL      ++        +A   Y+ ++          +     A   + + +  L
Sbjct: 1166 LYTVALHRYLRGRLPDYDYDTHMAGYLYLFVRGVRPDWRSGGEPAGVHARRPARELVDAL 1225

Query: 995  IEIVT 999
              ++ 
Sbjct: 1226 DRMME 1230


>gi|94265105|ref|ZP_01288871.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
 gi|93454435|gb|EAT04730.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
          Length = 1239

 Score = 47.6 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 85/948 (8%), Positives = 200/948 (21%), Gaps = 176/948 (18%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-------AEHLMKGTKGPIIIAG 234
             L A F     +   +RL      S       L  A           L+       +I  
Sbjct: 331  QLLAGFGATVRRELPKRLYAAGRQSFDDLLHRLAEALGDPGRKALAGLIAARYPVALIDE 390

Query: 235  STGSIPATARLMSTVA----NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
               + P    +   V            ++   D       +      +    + +     
Sbjct: 391  FQDTDPIQYAIFQAVYQQASRAEAATRLILIGDPKQAIYAFRGADIFAYLGAARDAGEQC 450

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
            +           ++      + L    N ++                     +  +    
Sbjct: 451  Y----------TMNTNWRADRSLVAAVNAIFAAQPNPFVVPEIAFYPVKPQPEAGDGWHG 500

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
                  + +  +     + E                    L+T  R+  +  +  L    
Sbjct: 501  GEVGGTAPLQFLTLAPAKVE-------------------ELLTGARSKKQLARSTLENQI 541

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
              +  +  + L      + LT+   A  +      IA LV+    +     +   R K  
Sbjct: 542  PALVAADLVKLL--RGGAALTTGDAADRRPLQPADIAILVREN--RQADEIQAALRLKGV 597

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
              +V  R +  +    +  +++L  +  Q                     +  +    + 
Sbjct: 598  KSVVHSRASVLNSRQAEQLAILLYGLLEQAGEGQRRAAMVSELLACTPAELATLAEDEKR 657

Query: 531  ITPLVTYKTNKNSTCGNLSI---SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                +   +          +              + +      +     +    + L   
Sbjct: 658  WQQWLNDFSRWREIWRERGLISMMRIIDQEKGFTRRLLPMADGERRLTNYRHLFELLHHR 717

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
              +     + +     E                       + IL    ++ L F  +   
Sbjct: 718  EKEEHLQATALLKWFDEARAGRADATAEAQELRLESDQEAVRILTIHRAKGLEFPVVYCP 777

Query: 648  GLNEGVWPKNTAKNPFLSR--------------VMQSDLNLKTAEKYIGQAAHDFEMANG 693
             L +    +       L                    +  L+  E++  +    +     
Sbjct: 778  YLWKTWQKERRKPEEVLIYHDPKADYQGKIALLPTAEERRLRAQEQFAEELRLLYVALTR 837

Query: 694  TRHLIYTRSLRENNIPTIASRWL----QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
             +H         +     A   L    Q+ +     +   +L    +    W  +     
Sbjct: 838  AKHCCLVVWEAASGYQDTALAHLLHGGQQPITNDRAELLADLTGACKRQPHWQWRPLPAD 897

Query: 750  KQPHYKRPKPFPPL--------------EAQPRTYSFSEIKQLINDPYAVYARRIL---- 791
                     P  P                   R  SFS++          +++       
Sbjct: 898  PAAVAPWRDPSRPEESAGGYCRTLRHGIAPAWRVGSFSQLIAARGGQAPDFSQGRDYDAP 957

Query: 792  --------------------------KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
                                      +L         P   + G L H I   +      
Sbjct: 958  GRPASAPLADAPAAQGGADHGEAVKQRLPARVPLADFPAGLNAGNLLHRIFELI------ 1011

Query: 826  KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV-- 883
             +  E +   + I +                     +   + L+       S     +  
Sbjct: 1012 -SFHEASEHRRIIAEQAAAFGLTGAMEPEKVVAELSQAVAAVLQTPLLSDESFSLADIDD 1070

Query: 884  -----NIPAKMAIESIGIHLT------------------------------------GFA 902
                  +     +   G  LT                                    GF 
Sbjct: 1071 QHRLNEMSFTFPLCQRGSPLTAAALAAAFAEEAVGLPPAYPDHLAALPFTALQGFMKGFI 1130

Query: 903  DRIDLLKSGFVDITDYKTG---------DNPKKE--TAQKLIDPQLSLEAAALKAGSFSQ 951
            D +   + G   I DYK+             +      +     Q  L   AL     ++
Sbjct: 1131 DLVFQHR-GKWYIVDYKSNLLGDSHADYQPGRLWPPMVEHHYILQYHLYTVALHRHLSAR 1189

Query: 952  IDC----RKVANLFYIRLKQ-KFKIDCITNDKKKYSADELSEKSLKNL 994
            +           + Y+ ++    ++       ++  A  L +   + L
Sbjct: 1190 LPAYDYRHHFGGVLYLFIRGMHPELGPAAGIFQQRPAAGLIDHLSRRL 1237


>gi|289641082|ref|ZP_06473250.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
 gi|289509023|gb|EFD29954.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
          Length = 1327

 Score = 47.6 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 49/501 (9%), Positives = 104/501 (20%), Gaps = 43/501 (8%)

Query: 46   SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV-S 104
                   T+RA  ELR     +  ++++ +      G  +         L    +  V  
Sbjct: 705  RCLAVTFTRRAAAELRERLDALIPQQASRVFATTFHGLGLRMVQEQHARLGLGPDVAVAD 764

Query: 105  NIQRLLELARLILIWRNK---LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
               R   L   +    +    L  + + L           P +   LA         +  
Sbjct: 765  EAVRTQILREALAGTASGTRNLERLRRALAGLRRARALGEPTDGHELAVVARGYERELRA 824

Query: 162  EE-KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
                  +DL  L          +A ++       W +   +++          L     +
Sbjct: 825  RNLVDLDDLVQLPVLAMREHPEIADEYRARWQHVWVDEYQDVDEL-QYILLTMLAGRFGD 883

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                    P+                         A +    D       +         
Sbjct: 884  ASPACPPEPV-----------------------PAANLCAIGDPDQAIYSFRGSDVGFFL 920

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                +   +     +       + ++                   V       P      
Sbjct: 921  RFRDDFRDAKVVSLTRNYRSTPVIVEAAVRLIEPATLVPGRTLGAVGEHPHSAPVLLRRT 980

Query: 341  NTDILENK--IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
              +  E    +  I++     +    D          +        +    A++      
Sbjct: 981  ADEADEASVVVGLIEEALGGTSFHALDT--------GVDGTGQARLSFSDIAVLYRTARQ 1032

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            AR V   L R G      +    + T   + L      +        I      P     
Sbjct: 1033 ARPVMDALDRQGFPFQRRSHNRFADTPGVAYLL---ELVGDDTPADGIPAAPVLPADTVP 1089

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
               + +     A   +AL             +       T  +    P   +  +     
Sbjct: 1090 ARGRGVLARLRAAAQIALDSAAGLPGRGGP-ASSGSLPGTAPDARSGPVSPAGPASPTPP 1148

Query: 519  LAVLLVDHILQCITPLVTYKT 539
                    I   +  L +  T
Sbjct: 1149 AGPPNEAEIRYALDVLTSLAT 1169


>gi|213971096|ref|ZP_03399216.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato
            T1]
 gi|301384181|ref|ZP_07232599.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato
            Max13]
 gi|302060529|ref|ZP_07252070.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato
            K40]
 gi|213924204|gb|EEB57779.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato
            T1]
          Length = 1230

 Score = 47.6 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 99/957 (10%), Positives = 218/957 (22%), Gaps = 134/957 (14%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A             +   +   + L   
Sbjct: 271  FEKLAAWAADETQEALDLGTGFTRLTPDGVAEAWKSDPPSHPAFAAMAQLKAALDGLPKP 330

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++   W+ +A F +        R  E+     +      +          L++  
Sbjct: 331  DAAVLQHAAQWV-SARFEEE-----KRRRAEMGFDDMLLRLDGALHGAGGERLATLIREQ 384

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  ++           +    D       +      +     
Sbjct: 385  FPVALIDEFQDTDPVQYRIFDSIYRLEGNDEQTGLFLIGDPKQAIYAFRGADIYTYLRAR 444

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T    H   +  +    +      V        E  G  +   +       +D     
Sbjct: 445  QATDGRWHTLDTNYRSSHAMVESVNHVFTRAEQRPEGKGAFLFRDEKGNQVPFADALAQG 504

Query: 344  ILENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK-------- 387
              E    +     +  V  +E++         ++ A   A  +   L+  ++        
Sbjct: 505  RKETLEVDGTALTALTVWHLESEQPVSGVVYRQQLASRCASEIVRLLNAGQQGRAGFTAP 564

Query: 388  ----------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                        A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A
Sbjct: 565  GNAQRGLRPADIAILVRDGKEAQAVRSQLTARGVRSVYLSDKDSVFAAQEAHDLLSWLKA 624

Query: 437  IFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              +        A    +   L                  ++  RG +  +    +  ++ 
Sbjct: 625  CAEPDSERTLRAALACITLDLPLAELERLNQEELAWEQRVMQFRGYRAVWRSQGVLPMLR 684

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +        +        E      + L + + Q    L   +        +L++S  
Sbjct: 685  RLLHDFALPQTLM--TRTDGERVLTNLLHLSELLQQAAAELDGEQALIRHLGDHLALSGQ 742

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-- 611
                    Q + L+   +L  +    + K L      +    S    +            
Sbjct: 743  AGE----EQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDAD 798

Query: 612  ------LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                  L   E +  + +       L  L   L   +     G+ +       +     S
Sbjct: 799  GRAQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNANSSMLHRS 858

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             +           +         ++A G   +      +    PT  S    R       
Sbjct: 859  ALGYLLGGGTALPESADLKVWLRDLAEGCSAIAL----QPVPEPTDDSFSAPRNEASLVK 914

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                  +     ++     L             P  P             ++L +D    
Sbjct: 915  LLVPKRRAAENWWIASYSALRIGDTVTAGADESPDSPQA-----------QKLFDDERLD 963

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                   L       + P   + GT  H ++     +       +   L   +      +
Sbjct: 964  PEAPRDILVSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFANTALDPVELESVVARRCNRR 1023

Query: 846  ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-----------VNIPAKMAIESI 894
                      W           L    ++      +            V +    A  ++
Sbjct: 1024 G------WKGWIITLRDWLQQMLNMPLRLSPDSTPVALGDLNQPNQYRVEMEFWFASTNV 1077

Query: 895  GIH---------------------------LTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
             +                              GF D     + G   + DYK+      +
Sbjct: 1078 NVAQMDTLVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHE-GRYYVADYKSNWLGSDD 1136

Query: 928  TAQKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKF 969
             A               D Q  L   AL     +++      + +    Y+ L+   
Sbjct: 1137 DAYTDLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYDYDQHMGGALYLFLRGSR 1193


>gi|326780639|ref|ZP_08239904.1| 6-deoxyerythronolide-B synthase., Mycocerosate synthase [Streptomyces
            cf. griseus XylebKG-1]
 gi|326660972|gb|EGE45818.1| 6-deoxyerythronolide-B synthase., Mycocerosate synthase [Streptomyces
            cf. griseus XylebKG-1]
          Length = 5336

 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 82/717 (11%), Positives = 163/717 (22%), Gaps = 28/717 (3%)

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
             EF       S   P I  +  V  E   A    +      V + +R +  A  + + R 
Sbjct: 774  EEFSREIAGLSFEAPRIPVVSTVTGEVAGAGFGSAAY---WVEHARRPVRFADAVGVARG 830

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
                +  ++ P+  LS  +       +A  L    D   T       LH    +     W
Sbjct: 831  LGVRVWAEVGPQPALSAALDVREGEVVANFLRRDRDQATTLLTGLSRLHVHGVDVAWDSW 890

Query: 182  L----LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
            +     + D    A +     L     S       A      E + +   G + + G T 
Sbjct: 891  VPRGTDSVDLPTYAFQRRRYWLEGSARSVVGSGVDASTAEFWEAVERNDLGALGLDGDTP 950

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHI---PTAIWNTITEKSTNITSSNTTYSTHPQY 294
            S      +++           L GL  H+   P       T   T      +        
Sbjct: 951  SDRVL-PVLTEWRRGRREHHALAGLRYHVTWKPVPQPADTTPSLTGTWLVVSHDEDVSAP 1009

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             LA +          +   G     +  R   ++++  P                     
Sbjct: 1010 LLALVDGLGARAELLIVEPGTGRAALADRLRAVAENAEPLAGVVSALALPGGAAPGEWHA 1069

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
               ++AL++A  +      +    R ++             R+        L R      
Sbjct: 1070 TADNLALVQALGDTGATAPLWCLTRGAVGTGTDD-----PVRDPEAAAVWGLGRVAALEH 1124

Query: 415  ISAGIPLSTTLHSSILTSLLNA--IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
                  L         ++      +           +    +             ++  E
Sbjct: 1125 PDRWGGLIDLPADPDASAYQRLGHVLTGATGEDQIAVRATRMLACRLRRATAPALRDEPE 1184

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
                     +     L   V  R+A +     V   +        +     ++ +   +T
Sbjct: 1185 WSPGGSTLITGGTGALGGHVARRLAERGAEHIVLLSRLGPDAPGADDLRRDLEALGSRVT 1244

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL---FS 589
                  + +      ++         T +    + +   L  L  E     L +      
Sbjct: 1245 VRACDISRRADVAEAIAAVPAAHPLTTVVHAAAVLDDAPLSALTPERLASVLDAKATSAR 1304

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
             + E    +   +         ++           ++ L  L           T I  G 
Sbjct: 1305 YLDELTRDLPLASFVLFSAFGGVLGSAGQGNYAAANAVLDALADQRRAAGLPATAIAWGA 1364

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
              G      +    L          +        AA    + +G  H++          P
Sbjct: 1365 WAGDGMAARSAATVL---RLRRTGARPMAPERALAALGRALGDGETHVLVADVDWSRFTP 1421

Query: 710  ----TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
                   S  L  L    G    +                         +R      
Sbjct: 1422 AYTAARPSMLLADLPDARGASVPNGAPAADGTGPALPEAARRLAALSGSERHAAVLD 1478


>gi|237746116|ref|ZP_04576596.1| ATP-dependent exoDNAse beta subunit [Oxalobacter formigenes HOxBLS]
 gi|229377467|gb|EEO27558.1| ATP-dependent exoDNAse beta subunit [Oxalobacter formigenes HOxBLS]
          Length = 1253

 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 94/925 (10%), Positives = 219/925 (23%), Gaps = 110/925 (11%)

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI------- 230
               + L   FL  A+    E+  E    +       L  A  +  M      +       
Sbjct: 337  AARYGLLKRFLAEATVSLKEKKRERRTIAFDDMLANLYEALNDPGMPWLAEAVRMQFPAA 396

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT-EKSTNITSSNTTYS 289
            +I     + P    + S V   P    V    D       +             +    +
Sbjct: 397  LIDEFQDTDPLQYAIFSAVYREPES-PVFLVGDPKQAIYSFRNADLHTYFAARENLDALA 455

Query: 290  THPQYSLAKLLDFLDIK------REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
             +      + +  L               L +  + +  R        L  ++ D     
Sbjct: 456  RYSLAENHRSVPELIAACNTLFSVNKRAFLQDGLDFVPVRPGKRELPVLTDESGDGPGPF 515

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-----------KSALI 392
                     Q+    +    A  +  EA++  +A  ++  +  K             A++
Sbjct: 516  PALCVWMLGQENGEWLKRSAARKQALEAMADEVARLINAGKAGKLAIGGRPAGAGDVAVL 575

Query: 393  TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                  A  V+  L R GI     +   +  +  +  L  LL A+   +D   +   V  
Sbjct: 576  VRSHREAAMVRQALARRGIGSVSLSQESVFQSREARELECLLFAMLTPDDESLLMAAVST 635

Query: 453  PLAKFGFPEKYLSRA-KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             +              + AL     R  +      +  +    R    +           
Sbjct: 636  EMIGLDAGAIEALAGDEAALSGWIGRFGQYRRAWRENGAACALRWLIHREGVVSRLLAFA 695

Query: 512  LSEEDKELAVLLVDHI---------LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
              E      + L++ +            +      +           +   T   +  + 
Sbjct: 696  DGERRLTNLMHLLELVGRESGTENAPDSLMRWYAERREGKKKAEEEELRLETDRHLVQVM 755

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE-----TGSCIKANAIEWIDIITRLIDGET 617
             +   +  + P ++            ++  E      G     +  +  D     +    
Sbjct: 756  TLHRSKGLEFPFVFCPLLWDNFPRRGNETGEGLEYHEGHATVVDYRKLADDEQETVRKNA 815

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDT----LILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               +  +   L  +    +    +      + +    E      T     L   + +   
Sbjct: 816  ALERAAEDMRLIYVALTRAVYRCYLVAGCYVRVTRRGESETKTTTESRKSLLNWLVAGDG 875

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
                +    +         G +         E       S  L             +   
Sbjct: 876  FAPPDWLAAKD--------GKKEETVLLPEPEQIGSAWES--LASRCPHIAVTALPDSVG 925

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                  D T  L    +              +     +  + +   +D  A++A      
Sbjct: 926  ATVDASDETATLLTAARFDKTVGTGWRMNSFSGLMRNAVDDTETGDHDERALFAGLSGLS 985

Query: 794  DFIPHFKKDPDRTDR------GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
            +  P      D          G+  H +         +     +   +KQ       K  
Sbjct: 986  ENRPEALPANDILLFPKGTYAGSCLHAVFENADFTDESTWEKAVESALKQFPQRVGGKLL 1045

Query: 848  LPPHI-DIIWRHLFHKISHSFLEHEEKIQ-----SSIEKIFVNIPA-------------- 887
                    + +    K+    +                +     P               
Sbjct: 1046 SGAEEGQAVLKGRALKMLGDVMATPLPDGICLGNVGNGRRLTEWPFCLAAARLSAKRLNR 1105

Query: 888  ----------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNP--------KK 926
                      ++A + +  +L GF D +  +  G   + D+K+   G  P        + 
Sbjct: 1106 LVKKSGYAVPELAFDDMTAYLNGFVDLVFEM-DGRFYLLDWKSNHLGYRPEDYGIARIET 1164

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQ-KFKIDCITNDKKKY 981
            E A+     Q  L   AL      ++      R    +FY+ ++  +             
Sbjct: 1165 EMAEHGYHWQYLLYTVALHRYLSGRLPDYDYGRHFGGVFYLFVRGVRPDWKNGDGTPSGV 1224

Query: 982  SADELSEKSLKNLIEIVTL--LQNG 1004
               +  +++++ +  ++      +G
Sbjct: 1225 FFHKPGQETVEAIDRLLKQPGFADG 1249


>gi|182412468|ref|YP_001817534.1| UvrD/REP helicase [Opitutus terrae PB90-1]
 gi|177839682|gb|ACB73934.1| UvrD/REP helicase [Opitutus terrae PB90-1]
          Length = 1109

 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 55/449 (12%), Positives = 118/449 (26%), Gaps = 49/449 (10%)

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                   ++PL +    ++                         E  +        +   
Sbjct: 640  RAWEHVQMSPLASVLHAQHVRTPEQLTRRLLTEIHRDGFERTFGEWARRLEPRLASDDAF 699

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                  +         A     +      ++   V  ++E +  + ++   +++ L FD 
Sbjct: 700  SRERLRQFAAAAGLFDATGSRDVAEFIAFME-RHVVREVESADVVRVMTIHKAKGLGFDV 758

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQS-------------DLNLKTAEKYIGQAAHDFEM 690
            +IL  L                   +              D +   AE      A     
Sbjct: 759  VILPDLEGQKLDSRRDGLAVQRGPDRQVEWVLDLPGKLIHDCDTILAEHVRAAEADACYE 818

Query: 691  ANGTRHLIYTRSLRENNIPTIA-----SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
            A    ++  TR+ R   +         SR   RLL     +    ++   + +     + 
Sbjct: 819  ALSLLYVAMTRAKRAMYLVVKPPGASSSRNYPRLLARTLGEETIPVRVGAREFAGAFSEG 878

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP-- 803
            D                     +             P  + ARR   +            
Sbjct: 879  DPRWHLDLQPAIAADAATSVVRQRIEPLR-SAAAKSPRRLVARRPSSVQGTQWMGAQLFS 937

Query: 804  ----DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
                DRT+ GT  H ++ E+        TP     M     +  E   +           
Sbjct: 938  AARTDRTEFGTAVHRLLAEV-----EWGTPATAQSMTTEWRARGEDAAVVAEAA------ 986

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID--LLKSGFVD--- 914
                  S         ++  +++     ++ +E   + ++G  DR+      +G      
Sbjct: 987  --GCLESPALAHVWRSAANAEVWRERAFEIVLED--VWVSGIFDRVIVWRDAAGRPIRAS 1042

Query: 915  ITDYKT---GDNPKKETAQKLIDPQLSLE 940
            + D+KT   G++P+ +   +    QL+L 
Sbjct: 1043 VFDFKTDRVGESPQWDELARRHAGQLNLY 1071


>gi|47842849|ref|NP_958125.2| gp20 [Burkholderia phage Bcep43]
 gi|47719037|gb|AAR89311.2| gp20 [Burkholderia phage Bcep43]
          Length = 424

 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 9/161 (5%)

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
           P   +  T S S  ++  N P +V   + +                 GT  H +    ++
Sbjct: 17  PGVVEHSTLSVSGRERWRNCPASVTLSKGM-------PDNSSPAAAEGTCAHTVGEFYVR 69

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
           +  +          +    S  E  +L       W     +   ++ +    +     + 
Sbjct: 70  QHFD-LPGAAPRGAEAPPQSVPEGLDLKGKTVEEWNDDLRRHGKAYRDFIISLIPPGVEA 128

Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI-TDYKTG 921
           FV++  ++A ++I   L G AD +       V I  DYK G
Sbjct: 129 FVSLEQRVAAKAIDGRLFGTADCLIWCPGARVLIVVDYKYG 169


>gi|332969230|gb|EGK08260.1| hypothetical protein HMPREF9374_3468 [Desmospora sp. 8437]
          Length = 865

 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 43/528 (8%), Positives = 108/528 (20%), Gaps = 57/528 (10%)

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395
                       +  + +K    + ++   +                 E      ++   
Sbjct: 229 QRGGDWFRHRMGEPGDGEKDPISIRVLRFPSPARFREYA-----RIEAERGSGVRVVAPS 283

Query: 396 RNLARRVKLELTRFGINI---DISAGIPLSTTLHSSILTSLLNAI----FKLNDFMAIAT 448
            +   +   +L          + S    L        L  L  A          +  +  
Sbjct: 284 YDELNQSLRDLPSTDPPPPEENRSRKPDLPHHPAVRFLHHLYQARKVEGEIQLTYETLVE 343

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH---- 504
            +     +        +          L+     + I ++K  +    A Q         
Sbjct: 344 CITSGWVQAKEIPGTWALPLLLELEPYLKTPSPRFSIGEIKERLQTLEALQAAGREFDQL 403

Query: 505 -----------------VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                            +  +     E        L D +      L      +      
Sbjct: 404 AGEQSGRNRIKQYLSNPLRAFSFVHEERGGVTVRQLSDLVDDLEDKLKRLLPEEGEGMLT 463

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA----- 602
                  +     ++     +   +  L          +  ++  E    +         
Sbjct: 464 RDHFGVLRRIWQGVKRGLAADVEAIRELEEVLRHPLTLNWRAERDELHGLMSLFLRRKGE 523

Query: 603 --IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
               +       +DG  +  K    + L I   ++S   +        L+         +
Sbjct: 524 EERCFHCRGLEQLDGLALSEKPLHLADLSIRSLVKSHRRHRSLPAPLTLSWLKSSIRQER 583

Query: 661 NP---------FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
                      +L   +        A +        + +A G   L  + +   N     
Sbjct: 584 ERGGLTEVGASWLLHALLVHHYSDRAWQRFVPFQLFYTLAYGRGELTVSWTEGWNEHDGP 643

Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
           +S W    ++ G      + +   +       +     ++     P  F           
Sbjct: 644 SSDWELFAMLYGKDGKGSDWEGEAEDEDPVWEEPVTPREETEIPAPDIFREQIPGVY--- 700

Query: 772 FSEIKQLINDPYAVYARRILKLDFI--PHFKKDPDRTDRGTLFHNIIT 817
                 L   P   +    L+   +    F         G+L      
Sbjct: 701 ---WTDLDLCPRKFFLTGFLEHFPVYTRDFHHRLVFAQLGSLLTQQAE 745


>gi|23752331|ref|NP_705646.1| gp20 [Burkholderia phage Bcep781]
 gi|23507198|gb|AAN38021.1| gp20 [Burkholderia phage Bcep781]
          Length = 417

 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 9/161 (5%)

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
           P   +  T SFS  ++  N P +V   + +                 GT  H +    ++
Sbjct: 17  PGVVEHSTLSFSGRERWRNCPASVTLSKGM-------PDNSSLAAAEGTCAHTVGEFYVR 69

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
           +  +          +  + S  E  +L       W     +   ++ +    +     + 
Sbjct: 70  QHFD-LPGAAPRGAEAPLQSVPEGLDLKGKTVEEWNDDLRRHGKAYRDFIISLIPPGVEA 128

Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI-TDYKTG 921
           FV++  ++A ++I   L G AD +       V I  DYK G
Sbjct: 129 FVSLEQRVAAKAIDGRLFGTADCLIWCPGARVLIVVDYKYG 169


>gi|183980978|ref|YP_001849269.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium marinum M]
 gi|183174304|gb|ACC39414.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium marinum M]
          Length = 1110

 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 65/778 (8%), Positives = 178/778 (22%), Gaps = 100/778 (12%)

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
             + A   M+     +++     +     +++ +  +      ++   D       +    
Sbjct: 253  DSAARARMQQRWPVVMVDEFQDTDAVQWQVIDSAFS--GRCTLILIGDPKQAIYAFRGGD 310

Query: 276  EKSTNITSSNTTYSTHPQYSLA---KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
              +    +           +      L+D L +     +           ++        
Sbjct: 311  IVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDVKAHHQGHRLA 370

Query: 333  PPDTSDMRNTDILE-NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---- 387
                +D     ++    +         + ++     R+ A  I   L        +    
Sbjct: 371  GAPHNDALRLRVVRRATLGRRGIQNLPIDILRDHIGRDLASDIGALLASGATFAGRALQA 430

Query: 388  -KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
               A+I      AR     LT  GI+   +    + ++  +    +LL A  + +    +
Sbjct: 431  NDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSEAADDWLALLEAFDQPHRPGIV 490

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                          +                            +L      T +      
Sbjct: 491  RAAAATMFFGKTANDLAR----------------------GGDALTDRVAETLREWADYA 528

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV-- 564
              +   +  +      + D +L             + T     +S   + T+  L++   
Sbjct: 529  RERGVAAIFEAAQLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLR 588

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
               E R              +++    +     ++   +       R I    +    + 
Sbjct: 589  GQREDRGGATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHD- 647

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIG 682
                  L        +F T+   G  E     +      ++R             ++  G
Sbjct: 648  -GGTRCLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNG 706

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
              +           ++  R+         A    Q+    GG    +++           
Sbjct: 707  GLSRLLRGRRPGDSVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVIAAAPAIAGRP 766

Query: 743  R----KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL------K 792
                       +    +  +       +    +    +  + +     A   L       
Sbjct: 767  APSELATRRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSG 826

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIIT-------ELIKKRINK------------NTPEINH 833
             +        P     G+L H ++        +L  +  ++               ++  
Sbjct: 827  PEQPSPMADLPSGAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWPVQVPAAQLAA 886

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRH-LFHKI-------------------------SHSF 867
             +  + D+          +  I       ++                           + 
Sbjct: 887  ALVPMHDTPLGPLAGGLTLRQIGLPDRLREMDFEFPLAGGDEADAGGHAPDLRLADVGAL 946

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSG---FVDITDYKT 920
            L         +      +    A+    +   L+G  D +  +  G      + DYKT
Sbjct: 947  LRAHLDASDPLAPYADRLSGD-ALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKT 1003


>gi|139438971|ref|ZP_01772431.1| Hypothetical protein COLAER_01437 [Collinsella aerofaciens ATCC
            25986]
 gi|133775682|gb|EBA39502.1| Hypothetical protein COLAER_01437 [Collinsella aerofaciens ATCC
            25986]
          Length = 1210

 Score = 47.2 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 45/167 (26%), Gaps = 22/167 (13%)

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
              +   +    G+ FH     LI+   +         + +              +    R
Sbjct: 1028 AVEPAGNPMALGSAFHAACQWLIEMGADALPAARADALARQWR-----------LTPEQR 1076

Query: 858  HLFHKISHSFLEHE-EKIQSSIEKIFVNIPA-KMAIESIGIHLTGF-----ADRIDLLKS 910
              F      +L+        +   +   +P   +  E   I   G       D +    +
Sbjct: 1077 ERFDVALDRWLKSAVRADLLAWPCVRAEVPFFSLGCEDEDIARYGAYAEGAIDALATNPA 1136

Query: 911  G--FVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALKAGSFSQID 953
                  + DYKTG  P    E  Q+    Q  + A  L    F  + 
Sbjct: 1137 DPSRALVIDYKTGGTPDETPEQLQEKHVLQARVYADVLHKAGFEAVT 1183


>gi|134101961|ref|YP_001107622.1| hypothetical protein SACE_5463 [Saccharopolyspora erythraea NRRL
            2338]
 gi|133914584|emb|CAM04697.1| hypothetical protein SACE_5463 [Saccharopolyspora erythraea NRRL
            2338]
          Length = 8392

 Score = 47.2 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 72/815 (8%), Positives = 179/815 (21%), Gaps = 21/815 (2%)

Query: 55   RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELAR 114
            R  + L  E     G    +   I  L                ++   + N+  L    R
Sbjct: 3396 RLARRLVDELAHRYGGHVRLADAIG-LHHGERGFRRLGARWLRDVPQRLENLVALAH-RR 3453

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET------EEKKWED 168
            L      +   +                 + + L +++  ++D +         +   + 
Sbjct: 3454 LGHRVGRRAGAVPLWEEINEEFDRASGVPSLVEL-RDVRRLVDAVRRRYPDVGYDVTADH 3512

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
            L  +  +          +            + +           A  RA+A  L    + 
Sbjct: 3513 LRRMVRDFEPGDTRPVTEDDLSYLIGLVGPVKDHGRPVTFAALRAGWRADAGTLADRGRS 3572

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
             ++    + ++  TA  M+   +    A  L  L        W                 
Sbjct: 3573 ALVGLQLSLNVLTTAEAMAARPSVQERANQLMTLVGEERGVPWRPTDGDRARRLEELRAE 3632

Query: 289  STHPQYSLAKLLDFLD-IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                   +    D         +  L       Y  +  I            R T + + 
Sbjct: 3633 GEWLAEEMRAARDSTGDPAEAALLELAREYRNGYELARSIGAYISDARDGWARLTSLSQL 3692

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELT 407
             +    +  +   L     E +      + LR ++D           +  +   ++  + 
Sbjct: 3693 AVSVFGERPNRDQLAMVAEETDRLPPRLVRLRQAVDGEAGLRFGEIDEARIEEHLRAVVR 3752

Query: 408  RFGINIDISAGIPLSTTLHSSILTS-LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
            R+    + +   P++      +    L  A      +  +  +      +     +    
Sbjct: 3753 RWADGFETAGQHPVTDADVRHLAELVLGQAREGEVTWDGLHRVWTAQRNEVAERTERALA 3812

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
            A       A             +  +               W+   + +   L  L    
Sbjct: 3813 ALRDSLARAAADLAALPSWYQSELRMRADGIAGVVGESAGLWRPSDARQASSLEELRTHA 3872

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
             +            + S  G L ++D               +                 +
Sbjct: 3873 EVVATEARAARVAFEVSGLGPLLLADELVHRFGGDALGVDGQDGLSRGDRQRIVRLGALA 3932

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
                 +   + ++A+ + +   +   +     +           L  L    L    +  
Sbjct: 3933 AVLADVRRAADLRADDLRYAREVGEALAETVPELSDSVGVAPEHLRGLVREWLGLGDVDP 3992

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
              + +                    L    +     +             ++        
Sbjct: 3993 VSVADVRSLAERLVVLREESGRPVALAELGSSWVSERVDAALAGLLSAYDVLAGYLAGRP 4052

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRG-------QCYLDWTRKLDYTTKQPHYKRPKP 759
                 A R       L      ++  +         +   +    L         + P  
Sbjct: 4053 ESHRPALRAAMAEASLYRHQPRESWSREDGRHVRHLEELREELDALAAGVMLEADEPPSA 4112

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK-DPDRTDRGTLFHNIITE 818
               +     +      + L   P    AR            +   D  D G L + +   
Sbjct: 4113 GESVARSGGSGLSELFEMLPEAPRPSAARESSGGSPEGADGRTGVDGLDLGELINALWNV 4172

Query: 819  LIKKRIN--KNTPEINHLMKQIIDSHFEKENLPPH 851
            + ++  +   +           +D   E E+L P 
Sbjct: 4173 VTEQPRSGQDSPRTTEATAADELDPDPEAESLDPE 4207



 Score = 38.4 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 85/921 (9%), Positives = 201/921 (21%), Gaps = 131/921 (14%)

Query: 101  PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
            P   +  R LE  R    W  +     +D   +   +  +  A        LA  I    
Sbjct: 3617 PTDGDRARRLEELRAEGEWLAEEMRAARDSTGDPAEAALLELAREYRNGYELARSIGAYI 3676

Query: 161  TEEKK-WEDLHAL-------------------KNEKYGMWWLLAADFLKIASKYWTERLV 200
            ++ +  W  L +L                     E+            +        R  
Sbjct: 3677 SDARDGWARLTSLSQLAVSVFGERPNRDQLAMVAEETDRLPPRLVRLRQAVDGEAGLRFG 3736

Query: 201  ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
            E++ +    +  A++R  A+      + P+  A                    +G   + 
Sbjct: 3737 EIDEARIEEHLRAVVRRWADGFETAGQHPVTDADVRHLAELVLGQAREGEVTWDGLHRVW 3796

Query: 261  GLDCHIPTA----IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                +            + +      +      +  Q  L    D +     +   L   
Sbjct: 3797 TAQRNEVAERTERALAALRDSLARAAADLAALPSWYQSELRMRADGIAGVVGESAGLWRP 3856

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA------------ 364
            S+     S+   ++      ++ R   +            +D  +               
Sbjct: 3857 SDARQASSLEELRTHAEVVATEARAARVAFEVSGLGPLLLADELVHRFGGDALGVDGQDG 3916

Query: 365  -------------------DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405
                                + R  A   A  LR + +  +  +  +    +        
Sbjct: 3917 LSRGDRQRIVRLGALAAVLADVRRAADLRADDLRYAREVGEALAETVPELSDSVGVAPEH 3976

Query: 406  LTRFGI---------NIDISAGIPLSTT---------LHSSILTSLLNAIFKLNDFMAIA 447
            L               + ++    L+              ++     + + +  D  A+A
Sbjct: 3977 LRGLVREWLGLGDVDPVSVADVRSLAERLVVLREESGRPVALAELGSSWVSERVDA-ALA 4035

Query: 448  TLVKH-----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             L+                   +      E    R         +    V      ++  
Sbjct: 4036 GLLSAYDVLAGYLAGRPESHRPALRAAMAEASLYRHQPRESWSREDGRHVRHLEELREEL 4095

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVT-YKTNKNSTCGNLSISDWTKLTVTCL 561
              +       ++E       +       ++ L          +    S     +      
Sbjct: 4096 DALAAGVMLEADEPPSAGESVARSGGSGLSELFEMLPEAPRPSAARESSGGSPEGADGRT 4155

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFS-KIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                LD    +  LW     +  S   S +  E  +  + +     + +           
Sbjct: 4156 GVDGLDLGELINALWNVVTEQPRSGQDSPRTTEATAADELDPDPEAESLDPEGSSALSDE 4215

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-- 678
                +  L            F      G+ E +       +     V  +  NL      
Sbjct: 4216 AGAPADALQDPPEAPGGTSEFGESGAPGVVELIPAGMLVTSDSTGEVHAAARNLPVEAGV 4275

Query: 679  ---------------KYIGQAAHDFEMANG-----------TRHLIYTRSLRENNIPTIA 712
                                 AHDF                  ++    +   +    + 
Sbjct: 4276 FAVVVQGRGDGGVVVDGRAVTAHDFADLISGWVPGMPVRLYACNISEGFARGLDAELGVE 4335

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              W  +L+  G           G       R +        +   +P      +    + 
Sbjct: 4336 VIWTPQLMWFGPEGLGYAPVVTGARVGADGRMVPVLPATGVWNTTRPGGERSVERPGGAP 4395

Query: 773  --------SEIKQLINDPYAVYARRIL---KLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                       + L        A   L   +L      +   D  +R T     +TE+  
Sbjct: 4396 LPEGAELLPGWEHLRAPTARFRAGPPLDLARLRNSARTEGVADARNRVTASDARLTEIYN 4455

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHID---------IIWRHLFHKISHSFLEH-E 871
                           ++ D       +    D            +    +++ ++ E  E
Sbjct: 4456 AMDAAAPDAPAPADVEVADPAETDALVTAAADLAASAAVSVEHAQRRMEELAAAWQELAE 4515

Query: 872  EKIQSSIEKIFV-NIPAKMAI 891
             + +   ++  +      + +
Sbjct: 4516 AERRQDGKRADLDEARQDLVL 4536


>gi|157875544|ref|XP_001686160.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68129234|emb|CAJ07774.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 3167

 Score = 47.2 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 77/784 (9%), Positives = 186/784 (23%), Gaps = 17/784 (2%)

Query: 106  IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
            +   LE A      +      +          L  +   A  LA  L    +  E ++  
Sbjct: 1572 LAADLEKAEEDAERQKADNRRLAADNERLAAELERAQEEAERLAAELEKAQEEAERQKAD 1631

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
             E L A  +        LAAD  K   +   ++      ++ +          A  L + 
Sbjct: 1632 KERLAAELDRAQEEAEKLAADLEKAEEEAERQKAENRRLAAELERAQEEAERLAAELDRA 1691

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
             +    +A       A        A++   A     L   +  A      E+        
Sbjct: 1692 QEEAEKLA--ADLEKAEEDAERQKADNRRLAADNERLAAELDRA--QEEAERLAADLEKA 1747

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
               +   +    +L   LD  +E+ +RL     +    +  ++           R     
Sbjct: 1748 EEDAERQKADNERLAAELDRAQEEAERLAAELEKAQEEAERLAAELEKAQEEAERQKADK 1807

Query: 346  ENKIPNIQKCFSDVALIEAD--NEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
            E     + +   +   + AD     EEA       R    +N++ +A +   +  A R+ 
Sbjct: 1808 ERLAAELDRAQEEAEKLAADLEKAEEEAERQKADNRRLAADNERLAAELERAQEEAERLA 1867

Query: 404  LELTRFG----INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
             EL R                      ++ L        +              LA    
Sbjct: 1868 AELERAQEEAERLAAEVDRAQEEAEQLAADLEKAEEEAERQKADNRRLAADNERLAAELD 1927

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
              +  +    A    A    +     ++      +R+A           + +   E    
Sbjct: 1928 RAQEEAERLAAELEKAEEEAERLAAELEKAQEEAERLAADLEKAEEDAERQKADNEQLAA 1987

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
             +       + +         + +      ++   +      + +  D  +   +   ++
Sbjct: 1988 ELNRAQEEAKRLAA-----DLERAQEEAEKLAAELERAQEEAEKLAADLEKAEEDAERQK 2042

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                  +  ++ +           E +       + +  + K +       L   +    
Sbjct: 2043 ADNERLAADNERLAAELERTQEEAEKLAADLEKAEEDAERQKADNEQLAAELNRAQEEAK 2102

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
                  L    E                 +   +L+ AE+   +   D          + 
Sbjct: 2103 RLAAD-LERAQEEAEKLAAELERAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLA 2161

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
                R        +  L++          DN +   +                  +    
Sbjct: 2162 AELERTQEEAEKLAADLEKAEEEAERQKADNERLAAELDRAQEEAEKLAADLEKAEEDAE 2221

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
                + +      +  ++      A    +  +         +    +            
Sbjct: 2222 RQKADNERLAAELNRAQEEAE-KLAADLEKAEEDAERQKADNERLAAELNRAQEEAERLA 2280

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
             +    +   E      +  +   E++           +   + +       EK Q   E
Sbjct: 2281 AELERAQEEAEKLAADLEKAEEEAERQKADNEQLAAELNRAQEEAEKLAAELEKAQEEAE 2340

Query: 880  KIFV 883
            K+  
Sbjct: 2341 KLAA 2344



 Score = 43.4 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 79/820 (9%), Positives = 190/820 (23%), Gaps = 20/820 (2%)

Query: 85   VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
             +E+                 +   LE A+          +  ++             A+
Sbjct: 2097 AQEEAKRLAADLERAQEEAEKLAAELERAQEEAEKLAADLEKAEEDAERQKADNRRLAAD 2156

Query: 145  AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
               LA  L    +  E      E        +      LAA+  +   +          A
Sbjct: 2157 NERLAAELERTQEEAEKLAADLEKAEEEAERQKADNERLAAELDRAQEEAEKLAADLEKA 2216

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                  Q A     A  L +  +    +A       A        A++   A  L     
Sbjct: 2217 EEDAERQKADNERLAAELNRAQEEAEKLA--ADLEKAEEDAERQKADNERLAAELNRAQE 2274

Query: 265  HIPT-----AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
                            EK           +   +    +L   L+  +E+ ++L     +
Sbjct: 2275 EAERLAAELERAQEEAEKLAADLEKAEEEAERQKADNEQLAAELNRAQEEAEKLAAELEK 2334

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD--NEREEAISIAIA 377
                +  ++      +    R     E     + +   +   + A+    +EEA  +A  
Sbjct: 2335 AQEEAEKLAADLEKAEEEAERQKADNERLAAELNRAQEEAEKLAAELEKAQEEAERLAAE 2394

Query: 378  LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
            L  + +E ++ +A +   +  A R+  EL R     +  A         +  L + L   
Sbjct: 2395 LEKAQEEAERLAAELNRAQEEAERLAAELERAQEEAERLAAELDRAQEEAERLAAELERA 2454

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
             +  + +A         A+        ++ +   +           +    ++  L    
Sbjct: 2455 QEEAERLAAELNRAQEEAEKLAANLEKAQEEAERQKAHNERLAAELERAREEAERLAAEL 2514

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
             +                ++   +       +     +  +  K         ++  +  
Sbjct: 2515 EKAQEEAERLAAELEKAREEAERLAAELERAREEAERLAAELEKAQEEAERLAAELDRAQ 2574

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                +     E  +      + + + L++   +  E    + A      +   RL     
Sbjct: 2575 EEAEKLAADLEKAEEEAERQKADNERLAAELDRAQEEAERLAAELERAQEEAERLAAELD 2634

Query: 618  VKPKIEKSSTLFILGTLESRL-----LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
               +  +     +    E        L                     N       +   
Sbjct: 2635 RAQEEAERLAAELDRAQEEAEKLAADLEKAEEEAERQKADNERLAAELNRAQEEAERLAA 2694

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             L+ A++   + A D E A          + R        +  L R          +  +
Sbjct: 2695 ELEKAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRAQEEAERLAAELDR 2754

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ------LINDPYAVY 786
             + +             +             +A+ +      +           D     
Sbjct: 2755 AQEEAERLAAELDRAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRAQEE 2814

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
            A R+         + +    D      +   +    R      E             E+ 
Sbjct: 2815 AERLAAELDRAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRAQEEAERL 2874

Query: 847  NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                                  E  E+ ++   ++   + 
Sbjct: 2875 AAELDRAQEEAERLAAELDRAQEDAERQKADNRRLAAELD 2914



 Score = 39.9 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 92/812 (11%), Positives = 197/812 (24%), Gaps = 21/812 (2%)

Query: 87   EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
             +       +  L   +   +   E  +          D  ++        L  +   A 
Sbjct: 1441 AELDRAQEEAERLAADLEKAEEDAERQKADNERLAAELDRAQEEAERLAAELEKAQEEAE 1500

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
             LA  L    +  E ++   E L A  +        LAAD  K       ++      ++
Sbjct: 1501 RLAAELEKAQEEAERQKADKERLAAELDRAQEEAEKLAADLEKAEEDAERQKADNERLAA 1560

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
             +          A  L K  +           + A    ++               +   
Sbjct: 1561 ELNRAQEEAERLAADLEKAEEDAERQKADNRRLAADNERLAAELERAQEEAERLAAELEK 1620

Query: 267  PTAIWN---TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                        E+           +      L K  +  + ++ + +RL          
Sbjct: 1621 AQEEAERQKADKERLAAELDRAQEEAEKLAADLEKAEEEAERQKAENRRLAAELERAQEE 1680

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER-----EEAISIAIAL 378
            +  ++           +    LE    + ++  +D   + ADNER     + A   A  L
Sbjct: 1681 AERLAAELDRAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRAQEEAERL 1740

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS-SILTSLLNAI 437
               L++ ++ +      +    R+  EL R     +  A         +  +   L  A 
Sbjct: 1741 AADLEKAEEDAE---RQKADNERLAAELDRAQEEAERLAAELEKAQEEAERLAAELEKAQ 1797

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
             +     A    +   L +     + L+      E  A R   ++  +      +   + 
Sbjct: 1798 EEAERQKADKERLAAELDRAQEEAEKLAADLEKAEEEAERQKADNRRLAADNERLAAELE 1857

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              +        +   ++E+ E     VD   +    L                 +     
Sbjct: 1858 RAQEEAERLAAELERAQEEAERLAAEVDRAQEEAEQLAADLEKAEEEAERQKADNRRLAA 1917

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                    LD  ++       E  K          E     +       D+     D E 
Sbjct: 1918 DNERLAAELDRAQEEAERLAAELEKAEEEAERLAAELEKAQEEAERLAADLEKAEEDAER 1977

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
             K   E+ +        E++ L  D   L    E                 +   +L+ A
Sbjct: 1978 QKADNEQLAAELNRAQEEAKRLAAD---LERAQEEAEKLAAELERAQEEAEKLAADLEKA 2034

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ------RLLVLGGTDFFDNL 731
            E+   +   D E        +     R        +  L+                   L
Sbjct: 2035 EEDAERQKADNERLAADNERLAAELERTQEEAEKLAADLEKAEEDAERQKADNEQLAAEL 2094

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
             +  +        L+   ++      +     E   +  +  E  +   +      RR+ 
Sbjct: 2095 NRAQEEAKRLAADLERAQEEAEKLAAELERAQEEAEKLAADLEKAEEDAERQKADNRRLA 2154

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
              +     + +  + +   L  ++     +    K   E             EK      
Sbjct: 2155 ADNERLAAELERTQEEAEKLAADLEKAEEEAERQKADNERLAAELDRAQEEAEKLAADLE 2214

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
                        +        + Q   EK+  
Sbjct: 2215 KAEEDAERQKADNERLAAELNRAQEEAEKLAA 2246



 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 92/809 (11%), Positives = 188/809 (23%), Gaps = 26/809 (3%)

Query: 87   EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
            EK  ADL  +           R L           +      +   E    L      A 
Sbjct: 1115 EKLAADLEKAEEEAERQKAENRRLAAELERAQEEAERLAAELERAQEEAERLAAELDRAQ 1174

Query: 147  WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
              A+ LA  ++  + E +K         E+            + A +   E       + 
Sbjct: 1175 EEAEKLAAELERAQEEAEKLAAELDRAQEEAERLAAELEKAQEEAERLAAELEKTQEEAE 1234

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
             +  ++   + EAE L    +     A    +           A      +         
Sbjct: 1235 RLAAELEKAQEEAERLAADLEKAEEDAERQKAEKERLAAEVDRAQEEAEKLAADLEKAEE 1294

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                     E+     +     +      L K  +  + ++ D +RL   +  +      
Sbjct: 1295 DAERQKADNERLAAELNRAQEEAERLAADLEKAEEDAERQKADNRRLAADNERLAAELER 1354

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER---------EEAISIAIA 377
              +          R  +  E    +++K   D    +ADNER         EEA  +A  
Sbjct: 1355 AQEEAERLAAELDRAQEEAERLAADLEKAEEDAERQKADNERLAAELDRAQEEAEKLAAD 1414

Query: 378  LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
            L  + ++ +++ A          R+  EL R     +  A         +    +    +
Sbjct: 1415 LEKAEEDAERQKADNERLAADNERLAAELDRAQEEAERLAADLEKAEEDAERQKADNERL 1474

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                D             +    E     A   LE       +   D   L + +     
Sbjct: 1475 AAELDRAQEEAERLAAELEKAQEEAERLAA--ELEKAQEEAERQKADKERLAAELDRAQE 1532

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              +            +E  K     L   + +          +           D  +  
Sbjct: 1533 EAEKLAADLEKAEEDAERQKADNERLAAELNRAQEEAERLAADLEKAEE-----DAERQK 1587

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                +    +E         +EE + L++   K  E     KA+       + R    E 
Sbjct: 1588 ADNRRLAADNERLAAELERAQEEAERLAAELEKAQEEAERQKADKERLAAELDR--AQEE 1645

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
             +               +          L    E         +       +   +L+ A
Sbjct: 1646 AEKLAADLEKAEEEAERQKAENRRLAAELERAQEEAERLAAELDRAQEEAEKLAADLEKA 1705

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
            E+   +   D          +     R        +  L++          DN +   + 
Sbjct: 1706 EEDAERQKADNRRLAADNERLAAELDRAQEEAERLAADLEKAEEDAERQKADNERLAAEL 1765

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                        +    +        E +         ++   D   + A      +   
Sbjct: 1766 DRAQEEAERLAAELEKAQEEAERLAAELEKAQEEA---ERQKADKERLAAELDRAQEEAE 1822

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                D ++ +          +    R      E      +      E+            
Sbjct: 1823 KLAADLEKAEE-----EAERQKADNRRLAADNERLAAELERAQEEAERLAAELERAQEEA 1877

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                       E  E++ + +EK      
Sbjct: 1878 ERLAAEVDRAQEEAEQLAADLEKAEEEAE 1906



 Score = 39.5 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 73/785 (9%), Positives = 176/785 (22%), Gaps = 23/785 (2%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
              +   LE A      +    + +          L  +   A  LA +L    +  E ++
Sbjct: 1409 EKLAADLEKAEEDAERQKADNERLAADNERLAAELDRAQEEAERLAADLEKAEEDAERQK 1468

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
               E L A  +        LAA+  K   +          A      Q A     A  L 
Sbjct: 1469 ADNERLAAELDRAQEEAERLAAELEKAQEEAERLAAELEKAQEEAERQKADKERLAAELD 1528

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            +  +    +A       A        A++   A  L                EK+     
Sbjct: 1529 RAQEEAEKLA--ADLEKAEEDAERQKADNERLAAELNRAQEE--AERLAADLEKAEEDAE 1584

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                 +        +L   L+  +E+ +RL     +    +               R  +
Sbjct: 1585 RQKADNRRLAADNERLAAELERAQEEAERLAAELEKAQEEAERQKADKERLAAELDRAQE 1644

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
              E    +++K        EA+ ++ E   +A  L  + +E ++ +A +   +  A ++ 
Sbjct: 1645 EAEKLAADLEKAEE-----EAERQKAENRRLAAELERAQEEAERLAAELDRAQEEAEKLA 1699

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
             +L +   + +              +         +L+     A  +   L K     + 
Sbjct: 1700 ADLEKAEEDAERQKADN------RRLAADNERLAAELDRAQEEAERLAADLEKAEEDAER 1753

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                   L     R  + +  +        +              ++   + DKE     
Sbjct: 1754 QKADNERLAAELDRAQEEAERLAAELEKAQEEAERLAAELEKAQEEAERQKADKERLAAE 1813

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSI--SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            +D   +    L                               +   +          E  
Sbjct: 1814 LDRAQEEAEKLAADLEKAEEEAERQKADNRRLAADNERLAAELERAQEEAERLAAELERA 1873

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            +  +   +  ++            ++      + +    +   +    +   L+      
Sbjct: 1874 QEEAERLAAEVDRAQEEAEQLAADLEKAEEEAERQKADNRRLAADNERLAAELDRAQEEA 1933

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
            + L           +  A     ++     L     +          +       L    
Sbjct: 1934 ERLAAELEKAEEEAERLAAELEKAQEEAERLAADLEKAEEDAERQKADNEQLAAEL---- 1989

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
                                         L++  +        L+   +    ++     
Sbjct: 1990 --NRAQEEAKRLAADLERAQEEAEKLAAELERAQEEAEKLAADLEKAEEDAERQKADNER 2047

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                  R  +  E  Q   +  A    +  +         +    +              
Sbjct: 2048 LAADNERLAAELERTQEEAEKLAADLEKAEEDAERQKADNEQLAAELNRAQEEAKRLAAD 2107

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                +   E      +      EK                  +       E++ + +E+ 
Sbjct: 2108 LERAQEEAEKLAAELERAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELERT 2167

Query: 882  FVNIP 886
                 
Sbjct: 2168 QEEAE 2172


>gi|302135046|ref|ZP_07261036.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato
            NCPPB 1108]
          Length = 1230

 Score = 47.2 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 97/953 (10%), Positives = 215/953 (22%), Gaps = 126/953 (13%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A             +   +   + L   
Sbjct: 271  FEKLAAWAADETQEALDLGTGFTRLTPDGVAEAWKSDPPSHPAFAAMAQLKAALDGLPKP 330

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++   W+ +A F +        R  E+     +      +          L++  
Sbjct: 331  DAAVLQHAAQWV-SARFEEE-----KRRRAEMGFDDMLLRLDGALHGAGGERLATLIREQ 384

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  ++           +    D       +      +     
Sbjct: 385  FPVALIDEFQDTDPVQYRIFDSIYRLEGNDEQTGLFLIGDPKQAIYAFRGADIYTYLRAR 444

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T    H   +  +    +      V        E  G  +   +       +D     
Sbjct: 445  QATDGRWHTLDTNYRSSHAMVESVNHVFTRAEQRPEGKGAFLFRDEKGNQVPFADALAQG 504

Query: 344  ILENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK-------- 387
              E    +     +  V  +E++         ++ A   A  +   L+  ++        
Sbjct: 505  RKETLEVDGTALTALTVWHLESEQPVSGVVYRQQLASRCASEIVRLLNAGQQGRAGFTAP 564

Query: 388  ----------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                        A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A
Sbjct: 565  GNAQRGLRPADIAILVRDGKEAQAVRSQLTARGVRSVYLSDKDSVFAAQEAHDLLSWLKA 624

Query: 437  IFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              +        A    +   L                  ++  RG +  +    +  ++ 
Sbjct: 625  CAEPDSERTLRAALACITLDLPLAELERLNQEELAWEQRVMQFRGYRAVWRSQGVLPMLR 684

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +        +        E      + L + + Q    L   +        +L++S  
Sbjct: 685  RLLHDFALPQTLM--TRTDGERVLTNLLHLSELLQQAAAELDGEQALIRHLGDHLALSGQ 742

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-- 611
                            + +     +     L  L               +++ D   R  
Sbjct: 743  AGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGTPLPLQFHDADGRAQ 802

Query: 612  --LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
              L   E +  + +       L  L   L   +     G+ +       +     S +  
Sbjct: 803  ISLQPTEALIKQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNANSSMLHRSALGY 862

Query: 670  SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
                     +         ++A G   +      +    PT  S    R           
Sbjct: 863  LLGGGTALPESADLKVWLRDLAEGCSAIAL----QPVPEPTDDSFSAPRNEASLVKLLVP 918

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
              +     ++     L             P  P             ++L +D        
Sbjct: 919  KRRAAENWWIASYSALRIGDTVTAGADESPDSPQA-----------QKLFDDERLDPEAP 967

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
               L       + P   + GT  H ++     +       +   L   +      +    
Sbjct: 968  RDILVSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFANTALDPVELESVVARRCNRRG--- 1024

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-----------VNIPAKMAIESIGIH- 897
                  W           L    ++      +            V +    A  ++ +  
Sbjct: 1025 ---WKGWIITLRDWLQQMLNMPLRLSPDSTPVALGDLNQPNQYRVEMEFWFASTNVNVAQ 1081

Query: 898  --------------------------LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
                                        GF D     + G   + DYK+      + A  
Sbjct: 1082 MDTLVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHE-GRYYVADYKSNWLGSDDDAYT 1140

Query: 932  L-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKF 969
                         D Q  L   AL     +++      + +    Y+ L+   
Sbjct: 1141 DLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYDYDQHMGGALYLFLRGSR 1193


>gi|23005408|ref|ZP_00048241.1| COG0210: Superfamily I DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 339

 Score = 47.2 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/355 (11%), Positives = 82/355 (23%), Gaps = 44/355 (12%)

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
           A    +  +A        +   D       W      +      +   +T         +
Sbjct: 6   AQYLWLRLLAQARKNVACV--GDDDQSIYGWRGAEVDNILRFEHDFPGAT---------V 54

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
             L+        +   ++ +  R+                    L   +         V 
Sbjct: 55  VRLERNYRSTGHILAAASGLIARN-----------------EGRLGKTLRTEDAAGEPVT 97

Query: 361 LIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAG 418
           +  A +  EEA  IA ++     +     + A++       R ++    + G+   +  G
Sbjct: 98  VTGAWDSEEEARQIAESIESLQRKGHPLSEIAVLVRISAQMREIEDRFVQVGLPYRVIGG 157

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP------------LAKFGFPEKYLSR 466
                        + L       D +A   +   P             A        L  
Sbjct: 158 PRFYERAEIRDALAYLRVTMNGADDLAFERIFNTPKRGLGDATLQTLHAYARADRIPLLA 217

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
           A   L        +    +  L           +   H P     + EE     +   D 
Sbjct: 218 AARKLIETDELKPRARSMLRGLVESFSRWTRLVEAKPH-PEVAQTILEESGYTEMWQKDR 276

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                  L   K    S      ++ + +  V+ +      E     +L     G
Sbjct: 277 SADAAGRLENLKEFVRSMEEFPDMAGFLE-HVSLVMEASEAEGADRVSLMTIHAG 330


>gi|294341371|emb|CAZ89788.1| putative exodeoxyribonuclease V, beta subunit recB [Thiomonas sp.
            3As]
          Length = 1202

 Score = 47.2 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 91/921 (9%), Positives = 194/921 (21%), Gaps = 146/921 (15%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANA---IWLAKNLADIIDIIETEEKKWEDL 169
               +  W +       DL  ++   L      A            + + +ET      DL
Sbjct: 283  FDALQAWLDDPAQQQPDLDDKTWAKLTPDGLRAGCNQGKQVEPPAVFNQVETLRAALADL 342

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR----AEAEHLMKG 225
              L  E        AA  +    +       + +    +    A +           +  
Sbjct: 343  ADLVPELQTY----AAAQVDARLRALKAASGQFSFHDQLERLDAALAGPQGERLRSRILE 398

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAI----VLPGLDCHIPTAIWNTITEKSTNI 281
                 +I     +      + + +            VL   D       +      S   
Sbjct: 399  QYPVALIDEFQDTSALQFSVFNRLYGITTAQTTHSAVLLIGDPKQSIYAFRGADIASY-- 456

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                              L      +     L             +++ F   + S    
Sbjct: 457  ------------------LRARQATQGRHSALQTNYRSTAEVVHSVNQLFERREQSAGAG 498

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
              +  +              + A    E+   +     +          L +      R 
Sbjct: 499  AFLYRDDEAPDADNPVPFIAVGARGRAEQ--LVCSEGPVPALTCSVHQELESKRDARERF 556

Query: 402  VKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                  R    ++ + AG   +    + +  S +  + +  D                  
Sbjct: 557  AAHAAARIVSLLNDTQAGFRQADGGFARLRQSDIAVLVRDGDEARAVR------------ 604

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                 R   ++ L        S +  DL   +      +        + +       +  
Sbjct: 605  RALQRRGVASVYLSDRDSVFASPEAADLLRWLRAVAEPRDGRLARAAFAAPTLGATIDEL 664

Query: 521  VLLV---DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
              L    D     +  L   +T          +           + +  ++         
Sbjct: 665  AALATDDDVFENRLALLAELQTIWLRQGVLPMLRQTLHRLDLPARWLSEEDGE-----RR 719

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                  L+ L      T    +A      + +      E V     ++  + ++   +S+
Sbjct: 720  LTNVLHLAELLQTASGTLDGEQALIRWLQEQMAGQSTEEQVVRLESEADLVRVVTIHKSK 779

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
             L +  + L                F +   ++       E+        +      RH 
Sbjct: 780  GLEYPLVFLP---------------FATAFKEAKDGADDRERLREDLRLLYVALTRARHA 824

Query: 698  I----------------YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
            +                  RS     +          +  L    F D+   +       
Sbjct: 825  LWVGIAALKVGKGSVCMLHRSAIGYLLGGDTPCEGAAIPGLLRETFGDSPAVQIVDAAQE 884

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND---------PYAVYARRILK 792
                      P     +P        R +S      L+ D               +  L 
Sbjct: 885  AELQRLQAAHPAPALIEPPNYHAQFERNWSIGSFSALVRDLTPRSTQQPALQAALQDELW 944

Query: 793  LDFIPHFKKDPD-------------RTDRGTLFHNIITELIKKR---------------- 823
                   +  P                  G   H  +  L +                  
Sbjct: 945  ATEPSMEQPSPATLQPSAARHRFPRGALVGKFVHEQLAWLGENGFALSAQQTQDSLLQRC 1004

Query: 824  -INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI- 881
                     +  + + +         P  + +            +L  E    + I+ + 
Sbjct: 1005 ARQGWDAPRSADLLEWLSEVLVTPLPPLGVALPEIDTLLAEMEFWLPVERACAAEIDALC 1064

Query: 882  -FVNIPAKMAIESIGIHLT----GFADRIDLLKSGFVDITDYK-----------TGDNPK 925
                +P +   E     L     GFAD +     G   + DYK           T    +
Sbjct: 1065 QRHILPGRARPELTERTLHGMVMGFADLVFHHA-GRYWVLDYKSNVLGTDDADYTQQALE 1123

Query: 926  KETAQKLIDPQLSLEAAALKA 946
                +   D Q +L   AL  
Sbjct: 1124 AAVLEHRYDVQCALYMLALHR 1144


>gi|256375074|ref|YP_003098734.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
 gi|255919377|gb|ACU34888.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
          Length = 876

 Score = 47.2 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 56/450 (12%), Positives = 110/450 (24%), Gaps = 39/450 (8%)

Query: 94  LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA---K 150
           L +  +    +       L +L   W   +      L   + L +    A+   L+    
Sbjct: 72  LRALGVPGAQARTFHAAALRQLRYFWPRVVGGDQWRLIDGNKLRMVAQAAHRAGLSTESD 131

Query: 151 NLADIIDIIETE---EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
           +L D+   IE         +D  A            A   ++   + +     E      
Sbjct: 132 SLRDLASEIEWAKASLIAPDDYPAAVARAQRDTPAPAPQVVR-VYQGYERIKNEAQLLDF 190

Query: 208 VGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
               +    A  EH       +      ++       P   R++       +   V+   
Sbjct: 191 DDLLLHTAAALEEHGGVAEEFRDRYRCFVVDEYQDVTPLQQRVLDAWLGQRDDLTVV--G 248

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D +     +   +       +     +T                   V RL         
Sbjct: 249 DANQTIYSFAGASPLPLLNFARRFPEAT-------------------VVRLERDYRSTPQ 289

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
              + +            +   L  + P            E D+E  EA ++A  +R  L
Sbjct: 290 VVALANDVIKWARGRPAGSRLKLIGQRPEGPDPV----FTEFDDEPGEAGAVARRVRELL 345

Query: 383 D--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
           D   +  + A++      +   +  L   G+   +  G               L +    
Sbjct: 346 DGGVSASEIAVLYRVNAQSEVFEQALAEVGVPYQVRGGERFFQRPEVRQAVLALRSASTG 405

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
             + A       P A  G      +R       V       S     +  L     A   
Sbjct: 406 GRYAAGLGDGAGPGAGSGRGPGGDARPGAVSGAVDAAAAPTSTTADRVSPLRAGLSAGGV 465

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
           +   +P   S  +   +  A   +D     
Sbjct: 466 SAAGLPADASTPAGGSRSAAHPALDAASGA 495


>gi|226365852|ref|YP_002783635.1| ATP-dependent DNA helicase UvrD2 [Rhodococcus opacus B4]
 gi|226244342|dbj|BAH54690.1| ATP-dependent DNA helicase UvrD2 [Rhodococcus opacus B4]
          Length = 708

 Score = 47.2 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 62/554 (11%), Positives = 129/554 (23%), Gaps = 64/554 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA  E+R     +           ++       +              V 
Sbjct: 59  GQVLAVTFTARAAGEMRGRLRSLGIGDGGAQVQARTFHAAALRQLRYFW------PQVVG 112

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           + +      RL+      +      +   +        A+ I  AK              
Sbjct: 113 DTE-----WRLLDRKFAVVSSAAGRVGLSTSTESIRDLASEIEWAKA----------SLI 157

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIA--SKYWTERLVELNASSPVGYQIALMRAEAEHL 222
             ED      +      + AA   ++    +    R  +          +    A  EH 
Sbjct: 158 APEDYPRAVAKLRREAPVDAAKVAEVYHGYEQLKARGQDGMLLDFDDLLLHTAAALEEHS 217

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +      ++       P   R++       +   V+   D +     +   T  
Sbjct: 218 AVAEEFRDRYRCFVVDEYQDVTPLQQRVLDAWLGERDDLTVV--GDANQTIYSFTGATPN 275

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                S        P+ ++ +L        E V     V     GR              
Sbjct: 276 YLLDFSRRF-----PEATVVRLERDYRSTPEVVSMANRVIGAARGRIA------------ 318

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITAD 395
                     ++   +    + + +E D+E  EA  +A  ++  +       + A++   
Sbjct: 319 ------GTRLQLIGQRDSGPEPSFVEFDDEPAEAAGVARTIKRLIASGTPAAEIAVLYRI 372

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL--------NDFMAIA 447
              +   +  LT+  I   +  G    T        + L               D + + 
Sbjct: 373 NAQSEVHEQALTKLDIPYQVRGGEGFFTRTEVRQAVAALRQAAGRDDLPDAVGADLVTLV 432

Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             V  PL             +    L AL          D +  +   +          H
Sbjct: 433 RAVLVPLGLTDAEPAGAQARERWASLSALVALTEEQLTQDPELTLDALLRELSLRAEARH 492

Query: 508 WQSRLSEEDKEL-AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                      L A   ++     +  L           G+ + +          + + +
Sbjct: 493 PPVVQGVTLASLHAAKGLEWDAVFLVGLTDGTLPIQHVLGDSNSAPDEAAVEEERRLLYV 552

Query: 567 DEHRKLPNLWFEEE 580
              R   +L     
Sbjct: 553 GVTRAREHLQMSWA 566


>gi|299469944|emb|CBN76798.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 2412

 Score = 47.2 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 69/734 (9%), Positives = 191/734 (26%), Gaps = 41/734 (5%)

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
            +    +    + AL+ E+            +   +   E  V +  ++   + +  + A 
Sbjct: 1103 MARRNQARRRVSALRQEREIEHQRAQELAFERQREAEQEAAVSIQRAARGHHAVKHVNAL 1162

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
             +      +          +  A    M   A      ++     C    A  + + ++ 
Sbjct: 1163 RQQRDTEIQRH------QEARMAMQAEMREQAASCIQRVIR----CRQALARVSVLKQQR 1212

Query: 279  TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
               +          Q      +  +       +    VS     R +   ++        
Sbjct: 1213 DAESQLKLREEEQRQA-----VQSIQCMARRNQARRRVSALRQEREIEHQRAQELAFERQ 1267

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNERE--EAISIAIALRMSLDENKKKSALITADR 396
                      I    +    V  + A  ++   E      A      E ++++A      
Sbjct: 1268 REAEQEAAVSIQRAARGHHAVKHVNALRQQRDIEIQHDQEARMAMQAEMREQAASCIQRM 1327

Query: 397  NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
               R+    ++      D  + + L        + S+     +      ++ L +    +
Sbjct: 1328 ARCRQALARVSVLKQQRDAESQLKLREEEQRQAVQSIQCMARRNQARRRVSALRQEREIE 1387

Query: 457  FGFPEKYLSRAKNALELVA-LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                ++     +   E  A +   + +     +K +   R             +  +  E
Sbjct: 1388 HQRAQELAFERQREAEQEAAVSIQRAARGHHAVKHVNALRQQRDTEIQRHQEARMAMQAE 1447

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV----------- 564
             +E A   +  +++C   L      K        +    +     +Q++           
Sbjct: 1448 MREQAASCIQRVIRCRQALARVSVLKQQRDAESQLKLREEEQRQAVQSIQCMARRNQARR 1507

Query: 565  ---CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                L + R++ +   +E          +         A     +  +  L      + +
Sbjct: 1508 RVSALRQEREIEHQRAQELAFERQREAEQEAAVSIQRAARGHHAVKHVNALRQQRDTEIQ 1567

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
             ++ + +     +++ +       +  +                R  +S L L+  E+  
Sbjct: 1568 HDQEARV----AMQAEMREQSASCIQRVIRCRQALARVSVLKQQRDAESQLKLREEEQRQ 1623

Query: 682  GQAAH--DFEMANGTRHLIYTRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
               +           R +   R  RE  +       + ++               RG   
Sbjct: 1624 AVQSIQCMARRNQARRRVSALRQEREIEHQRAQELAFERQREAEQEAAVSIQRAARGHHA 1683

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
            +     L            +    ++A+ R  S S I+++I    A+    +LK      
Sbjct: 1684 VKHVNALRQQRDTEIQHDQEARMAMQAEMREQSASCIQRVIRCRQALARVSVLKQQRDAE 1743

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
             +      ++     +I     + +  +    +    ++ I+    +E          + 
Sbjct: 1744 SQLKLREEEQRQAVQSIQCMARRNQARRRVSALRQ--EREIEHQRAQELAFERQREAEQE 1801

Query: 859  LFHKISHSFLEHEE 872
                I  +   H  
Sbjct: 1802 AAVSIQRAARGHHA 1815


>gi|227541926|ref|ZP_03971975.1| superfamily I ATP-dependent helicase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182369|gb|EEI63341.1| superfamily I ATP-dependent helicase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 686

 Score = 47.2 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 42/441 (9%), Positives = 98/441 (22%), Gaps = 66/441 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     TKRA  E+R     +   +       ++       +           +   S
Sbjct: 56  QRVLAVTFTKRAAGEMRDRLANMGIPRV----QARTFHSAAMRQLAYFWPRFAG-DLSYS 110

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            + + L L          +    +     +           I  AK              
Sbjct: 111 LLDKRLPL----------VAQAARSCGVSTDTETLRDLTGEIEWAKATL----------I 150

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN--ASSPVGYQIALMRAEAEHL 222
             ++        +    + +   +      + E                  L     +  
Sbjct: 151 SPDNYPEQVETFHRTPPV-SGKEVGQVYAAYEELKYRHGMVLLDFDDVINQLATGIEKVQ 209

Query: 223 -----MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +      +I       PA  RL+       +   V+   D +     +   +  
Sbjct: 210 GVADEFRQQYRTFVIDEYQDVTPAQQRLVRAWLGDRDDLTVV--GDANQTIYSFTGASPS 267

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                +       +P+    +L        +       V ++  GR              
Sbjct: 268 FLLDFT-----RDYPEAVTVRLQRDYRSTPQITDVANAVISKARGRIAGTRLQLQGMKPP 322

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITAD 395
                       P+                  EA +IA  ++  ++      + A++   
Sbjct: 323 GQPPQFATYECEPD------------------EAHAIAKKIQRLIETGTPPAEIAVLYRI 364

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF------MAIATL 449
              +   +  L+  GI   +  G             S +  +             A+  +
Sbjct: 365 NAQSAVFEEALSDAGIVYQVRGGEGFFLRPEIRQAMSGVTRLANNQRSGDIDPVEAVTAV 424

Query: 450 VKHPLAKFGFPEKYLSRAKNA 470
           ++        PE   +R +  
Sbjct: 425 LRRQGMTPEEPEGQGARERWQ 445


>gi|262198225|ref|YP_003269434.1| hypothetical protein Hoch_5053 [Haliangium ochraceum DSM 14365]
 gi|262081572|gb|ACY17541.1| hypothetical protein Hoch_5053 [Haliangium ochraceum DSM 14365]
          Length = 267

 Score = 47.2 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 52/189 (27%), Gaps = 25/189 (13%)

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
                  +S S+++  +  P   + R + KL       +       G   H ++  +++ 
Sbjct: 5   RALAHAPWSASKVQTALRCPRLFHYRYVDKLSEPETMPE----ARVGKAVHALLEHVLQG 60

Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
           +  ++         +        + L P                     ++ +   E   
Sbjct: 61  QELEDAEIDARAQLESEREQLRFDALRPG--------VEAFVGRLSGFRQRRRVYRE--L 110

Query: 883 VNIPAKMAIE-------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935
                 + ++       +      G  D   L     + + D+KTG    ++   +    
Sbjct: 111 FEYTLAVRVDMVATQFYAGDAFYRGIIDAAFLFDDDSLALVDHKTGQRAARQAIGE---- 166

Query: 936 QLSLEAAAL 944
           QL   A   
Sbjct: 167 QLEGYAVLA 175


>gi|238026680|ref|YP_002910911.1| exodeoxyribonuclease V subunit beta [Burkholderia glumae BGR1]
 gi|237875874|gb|ACR28207.1| Exodeoxyribonuclease V, beta subunit [Burkholderia glumae BGR1]
          Length = 1249

 Score = 46.8 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 87/902 (9%), Positives = 187/902 (20%), Gaps = 85/902 (9%)

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIA 233
             W  L A +L  A     E+       S       L  A A H      ++      +I 
Sbjct: 350  RWLALVAAWLAEAPARLAEKKRTRRVVSFDDLLANLHHALAAHPWLADTLRRRYPAALID 409

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
                + P    +  T+        +    D       +      +     +         
Sbjct: 410  EFQDTDPLQFAIFDTIFAPAG--PLFLVGDPKQAIYSFRAADLHTYLAARARARSCYTLA 467

Query: 294  YSLAKLLDFLDIKREDVKRLG-----NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
             +       +D               +  +    R+    ++     T            
Sbjct: 468  VNQRSTPAIVDACNRVFTANPHAFVLDDLDYPAVRAGTRQRAPFVDGTDPRAGAGDFRIW 527

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSL---------DENKKKSALITADRNLA 399
            +             +    +  A  IA  +R +                 A++       
Sbjct: 528  MLPEGDATPAKRDAQWQAAQACAAEIARLMRGARGGAVRLGEAPLAPSDVAVLVQTHRQG 587

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
              VK  L  +GI     A   +  T  +  L  +L AI    D   +   +         
Sbjct: 588  SLVKRVLAAWGIGSVELAQASVFATPDAEQLERVLAAIDAPGDLRRLRAALATDWFGLDA 647

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
               +     +A    A   +   +     +  +L R             + R++E   + 
Sbjct: 648  AALWRLDQGDAPAGAAAAADAMGWVERFSRYRLLWRERGFAVMWRTLARELRIAERLIDG 707

Query: 520  AVLLVD-----HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
                       H+ +      + +     T   L+              +  D +     
Sbjct: 708  VGGERRVTDVNHLAELTQARASAQPGIAPTLRWLAAQRRAGGGEDAQLRLESDRNLVQIV 767

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT----RLIDGETVKPKIEKSSTLFI 630
               + +G   + +F   +  G   +       D                     ++    
Sbjct: 768  TVHKSKGLEYAVVFCPFLNDGRLPEPREEALPDAREYHDATGAAVLHYGCDAAAAALAAA 827

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                E        + +            A    +++  +            G        
Sbjct: 828  QARREQAAERARLVYVALTRAVYRCYLVAGGYQVAKSTKEARRSVLNWLVAGGGHDFDTW 887

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
             +                    S      +                      R L    +
Sbjct: 888  LDTPPEADELAVGWRRLASGPISIEPLPAVPDREPLAAGADADALGGARHAARFLRDAWR 947

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD--------FIPHFKKD 802
               +         E +       E  +  +D  A     + +LD               D
Sbjct: 948  IASFSSLTASLAREQEGVAALPEEALRPDHDALAAAVDPLPRLDDGAARGGAPAEPDGDD 1007

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                 RG      +  L +              ++ +          P +      +  +
Sbjct: 1008 IVAFPRGAAAGECLHLLFELSAFDRADSWPEAARRALHE--RPVEAEPTLAERLPAMMTR 1065

Query: 863  ISHSFLEHE-----EKIQSSIEKIFVNIPA----------------------KMAIESIG 895
            +    +  E             +    +                         +A+E   
Sbjct: 1066 LVADVVATELVPGLRLDALDPRRRLNEMAFLFPAASLDLLALRELLTAHGYPDVALEPGT 1125

Query: 896  IH--LTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAA 942
            +     GF D I     G   I D+K+                   A      Q  L   
Sbjct: 1126 LTGFFKGFIDMIVEH-DGRFWIVDWKSNHLGVTPDAYGPAALDAAMADHAYALQALLYTV 1184

Query: 943  ALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998
            AL      ++        +A   Y+ ++                A   S + ++ L  ++
Sbjct: 1185 ALHRYLRVRLPGYDYDTHMAGYLYLFVRGVRPDWRSGGASAGVHAGRASRELVEALDALM 1244

Query: 999  TL 1000
              
Sbjct: 1245 RE 1246


>gi|227505540|ref|ZP_03935589.1| superfamily I ATP-dependent helicase [Corynebacterium striatum ATCC
           6940]
 gi|227197837|gb|EEI77885.1| superfamily I ATP-dependent helicase [Corynebacterium striatum ATCC
           6940]
          Length = 684

 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 42/439 (9%), Positives = 109/439 (24%), Gaps = 64/439 (14%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             +     T RA  E+R    ++           ++       +            P   
Sbjct: 54  QRILAVTFTTRAAGEMRDRLNQMGVGGV----QAQTFHAAARRQLRYFWPQVAGDLP--- 106

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                     L+    + +   ++ L  ++         + I  AK+       +   + 
Sbjct: 107 --------WELLDNKFSVVARAVRSLNLDNSKDSIRDYLSEIEWAKS------SLIGADS 152

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS-----SPVGYQIALMRAEA 219
             E +     E       +A        + + +     +         + +    +    
Sbjct: 153 YPEVIATTDREAPTDPAKVA-----EVFRRYEQLKSTQDRMFLDFDDLLMHIAGAIENVP 207

Query: 220 EHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +      ++       P   R+++      +   V+   D +     +N  +  
Sbjct: 208 SVAEVFREQYRTFVVDEYQDVTPLQQRVLNAWLGDRDDLTVV--GDANQTIYSFNGASPD 265

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                       T+P  ++ KL        +       V  +  GR+             
Sbjct: 266 YLLNF-----SRTYPNATIVKLQRDYRSTPQVTDLANRVIAKATGRAA------------ 308

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITAD 395
                     ++  ++    +      ++E  EA  +A  +   L++     + A++   
Sbjct: 309 ------GTRLELQGMRDPGPEPTFKAYESEEIEAKEVAGQILTLLNKGVKASEIAVLYRI 362

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTL----HSSILTSLLNAIFKLNDFMAIATLVK 451
              + + +  L   GI   +  G              +L +         D +AIA    
Sbjct: 363 NAQSEQFEQALADAGIVYQVRGGEGFFRRPEILEAIRVLIAATRRDDLPADPVAIARAAF 422

Query: 452 HPLAKFGFPEKYLSRAKNA 470
             L       +     +  
Sbjct: 423 VELGLTPTEPQGAQARERW 441


>gi|149882920|ref|YP_001294857.1| BcepNY3gp19 [Burkholderia phage BcepNY3]
 gi|148763571|gb|ABR10554.1| BcepNY3gp19 [Burkholderia phage BcepNY3]
          Length = 417

 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 9/161 (5%)

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
           P   +  T SFS  ++  N P +V   + +                 GT  H +    ++
Sbjct: 17  PGVVEHSTLSFSGRERWRNCPASVTLSKGM-------PDNSSPAAAEGTCAHTVGEFYVR 69

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
           +  +          +  + +  E  +L       W     +   ++ +    +     + 
Sbjct: 70  QHFD-LPGAAPRGTEAPLQAVPEGLDLEGKTVEEWNDDLRRHGKAYRDFIISLIPPGVEA 128

Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI-TDYKTG 921
           FV++  ++A ++I   L G AD +       V I  DYK G
Sbjct: 129 FVSLEQRVAAKTIDGRLFGTADCLIWCPGARVLIVVDYKYG 169


>gi|320531267|ref|ZP_08032246.1| hypothetical protein HMPREF9057_00105 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136534|gb|EFW28503.1| hypothetical protein HMPREF9057_00105 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 271

 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 50/200 (25%), Gaps = 24/200 (12%)

Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
           G      ++           +L+         R     P    P   + + +  L  D  
Sbjct: 18  GPAEEAPVQAEPDDETVRRWRLEAGLLLAERSRALSSGPAVRLPEHLAATRLDDLRADRR 77

Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
                    L       +       GT+FH+ + + +  R                    
Sbjct: 78  QFALDLRRPLPP-----EPRAAGRLGTVFHDAVAQRLSARGTLFG--------------L 118

Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903
            +  +P  +    R    +    +L+  E +    + I         I      L    D
Sbjct: 119 GQAGVPDSLGPQDRDRIER----WLDTAENLPLLEDYILAETETDREITIGATTLRCRMD 174

Query: 904 RIDLLKSG-FVDITDYKTGD 922
            +     G    I D+KTG 
Sbjct: 175 AVFRRSDGAGWLIVDWKTGR 194


>gi|115351152|ref|YP_772991.1| exodeoxyribonuclease V subunit beta [Burkholderia ambifaria AMMD]
 gi|115281140|gb|ABI86657.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria AMMD]
          Length = 1234

 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 91/905 (10%), Positives = 200/905 (22%), Gaps = 90/905 (9%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPI 230
            +   W  L AD+L  A     ER       S       L  A   H      ++      
Sbjct: 335  QRARWLALIADWLDTAPGELAERKRTRRVVSFDDLLANLYHALHAHPWLAETLRARYPAA 394

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS- 289
            +I     + P    + + +     G  +    D       +      +     ++ +   
Sbjct: 395  LIDEFQDTDPLQFAIFNRI--FAPGGPLFLVGDPKQAIYSFRAADLHTYLAARASASACY 452

Query: 290  --THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP-PDTSDMRNTDILE 346
                 Q S   ++D  +       R   +    Y      ++   P  D +D   +    
Sbjct: 453  TLAVNQRSTPAIVDACNRFFMSNPRAFVLDGLDYYAVRAGTRVRAPFVDATDPGPSGDFR 512

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---------KSALITADRN 397
                            +A   +  A  IA  +R + + + +           A++     
Sbjct: 513  IWALPGGDGTLLKRDAQAQAAQACAAEIARLMRGAREGHARLGDTPLSPGDIAVLVQTHR 572

Query: 398  LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
                VK  L  +GI     A   + +T  +  L  +L AI    D   + + +       
Sbjct: 573  QGSLVKRVLATWGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLRRLRSALAADWFGL 632

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN-------THVPHWQS 510
                 +     +         + ++   ++  S        +            +   + 
Sbjct: 633  DAGALWRMEQGDGDASREAADSADAMSWVERFSRYRLLWRERGFAVMWRTFTRELRIAER 692

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
             ++  D E  V  ++H+ +      + +     T   L+              +  D + 
Sbjct: 693  LMAGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGGGEEAQLRLESDRNL 752

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT----RLIDGETVKPKIEKSS 626
                   + +G   + +F   +  G   +  A    D                   E + 
Sbjct: 753  VQIVTVHKSKGLEYAVVFCPFLNDGGLREPPASGLPDAREYHDDAGDAVLHYGCDDEAAE 812

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
                    E        + +            A     SR  +            G    
Sbjct: 813  HAARQALREQAAERARLVYVALTRAVYRCYLVAGPYLSSRSTREARRSVLNWLVAGAGQS 872

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                 +         +  +       S     +          +   +       TR L 
Sbjct: 873  FDAWLDEPPDEAVLDAAWQALAGGPVSVAPLPVPARRERLAAGHDATQTLAARHATRVLR 932

Query: 747  YT--------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
                            +       +           +  +  D   V    I        
Sbjct: 933  DAWRMASFSSLTASMAREEAGVAVVPDDELRPDHDALAAVTPDGAFVAVDTIATEPPDDD 992

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
              + P     G   H +         +         +              P +      
Sbjct: 993  ILRFPRGAAAGECLHRLFELSRFTEPDSWHQAALGALHD------RPVEAEPELATRLPA 1046

Query: 859  LFHKISHSFLEHEE---KIQSSIEKIFVNIPAKMAIESIGIHL----------------- 898
            +  ++    +  E       + ++             +  + L                 
Sbjct: 1047 MMARLVDDVVRTELVPGMRLADLDPARRLDEMGFLFPAPSLELGALRRLLVAHGYPDVAL 1106

Query: 899  ---------TGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLS 938
                      GF D I     G   I D+K+                   A      Q  
Sbjct: 1107 DSGMLAGFIKGFIDMIVEH-DGRFWIVDWKSNHLGNTPDAYGPRALDVAMADHAYHLQAL 1165

Query: 939  LEAAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994
            L   AL      ++        +A   Y+ ++          +     A   + + +  L
Sbjct: 1166 LYTVALHRYLRGRLPDYDYDTHMAGYLYLFVRGVRPDWRSGGEPAGVHARRPARELVDAL 1225

Query: 995  IEIVT 999
              ++ 
Sbjct: 1226 DRMME 1230


>gi|78046135|ref|YP_362310.1| glutamate-ammonia-ligase adenylyltransferase [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78034565|emb|CAJ22210.1| glutamate-ammonia-ligase adenylyltransferase [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 955

 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 84/741 (11%), Positives = 186/741 (25%), Gaps = 48/741 (6%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           ARL       L +   D +             A  +A + A +    + E + WE    L
Sbjct: 214 ARLGQQLARLLDETTADGFSHRVDLRLRPFGTAGRVALSFAGMDQYFQREGRDWERYAWL 273

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------ 226
           K             +L+    +   R ++  A   +    A + AE     +        
Sbjct: 274 KARAVAGDIDAGEAWLETLRPFVYRRYLDFTALDGLREMKAAITAEVARHDRLDDIKRGP 333

Query: 227 ----------KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                     +   +I G         RL+  +        +       + TA       
Sbjct: 334 GGIREIEFLAQSLQLIRGGREPSLRERRLLPALQALVAAGQIDQENGQALSTAYRFLRRL 393

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +      PQ  L +    L +   D   L +       R        L P  
Sbjct: 394 ENRLQMLRDAQTHALPQAPLDRERIALGLGYADWSALLDALAPQRTRVAAEFAELLAPRV 453

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                  + +          + +A I   +          AL      +  ++   +A  
Sbjct: 454 RATAPDALADYWRALPGGDAAPLAGIGLHDP----DGAHQALADFAQSSGVRALSDSARA 509

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L R +   L          A            +  LL A  +   ++A+          
Sbjct: 510 RLDRVMPALLHAATRASQPDA--------AVRRMLGLLQATLRRTSYLALLD-------- 553

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                  L+R  + L   AL   + +   + L  L+  RI+    +    H     + + 
Sbjct: 554 --EQPSALARLVDVLSRSALLAERLAAYPLLLDELLDTRISGPLPDRAALHAACAETLQI 611

Query: 517 KELAVLLVDHILQCIT-----PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            +    L +   + +       L T    + +      ++   +  V  + ++   +   
Sbjct: 612 DDTEAALRELNERRLALSFRIALATLDGRQQAVESTRQLAWLAEAVVQTVLHLARSDMLA 671

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                       +       +E G     + +   D    +   +  +P         + 
Sbjct: 672 AHGHVPGGSFAIVGYGSLGGLELGFGSDLDLVFLYDHPPEVDASDGKRPLEAGRWFARLA 731

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
             + + L            +     +  K   +S +       +         A      
Sbjct: 732 QKVMALLAAETGAGRLYDIDVRLRPDGGKGALVSSLASYRDYQRDRAWTWEHQA-----L 786

Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
              R +    +L +          ++        +    ++ R +  LD +       KQ
Sbjct: 787 VRARAVAGDAALCDAFAHVRRDTLMRVRDTAQLHEDVRKMRARMRAELDRSDAGRLDLKQ 846

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                      L+A     +  + + L           + +  ++P     P       L
Sbjct: 847 GAGGLVDLEFVLQAGVLGLAAQQPQLLDACDTPALIDALARTHWLPDESSAPLHQAHAAL 906

Query: 812 FHNIITELIKKRINKNTPEIN 832
               ++  + +R     P   
Sbjct: 907 VDAGLSCTLDRRPRLLAPTPA 927


>gi|317507954|ref|ZP_07965649.1| hypothetical protein HMPREF9336_02021 [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253765|gb|EFV13140.1| hypothetical protein HMPREF9336_02021 [Segniliparus rugosus ATCC
           BAA-974]
          Length = 312

 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 72/278 (25%), Gaps = 34/278 (12%)

Query: 46  SVTIYVPTKRAIQELRS----EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
           S  +  P + A   LR       +  + + +   P++++          A      N  P
Sbjct: 48  SAVVLAPNRAAADLLRGEIHGRLLRASPELALAKPLVRTTHSYAFALLEARARTFGNPPP 107

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
            +                 +     + D               +      L  +      
Sbjct: 108 RLIPAAEQ-----------DATLRELADEQAARWPPSLRGALGSAEFTAQLRAVFQRAAQ 156

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV--------ELNASSPVGYQIA 213
                E L AL  E+    W+ A    +   +  T R             A        A
Sbjct: 157 HGHGPEGLIALGRERARPEWVAAGRTWQEYEQVMTLRNAVGMADPTGSPGALDAAELLTA 216

Query: 214 LMRAEA---EHLMKGTKGP-----IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
            + A A   + L +   GP     + +  +    P  ARL    ++  + A++    D  
Sbjct: 217 ALDAVAEDPDLLRQPLGGPGGRFVVFVDDAQHFDPQAARLAGLASDRADLAVLTADPDQS 276

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
           +    W    E   N           P   LA  +  L
Sbjct: 277 VF---WFQGAEAGPNFWRRARRLRLGPSQRLAPEVAGL 311


>gi|331694979|ref|YP_004331218.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
 gi|326949668|gb|AEA23365.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
          Length = 682

 Score = 46.8 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 51/544 (9%), Positives = 116/544 (21%), Gaps = 62/544 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
               V     T RA  ELR+    +           ++       +              
Sbjct: 52  APGQVLAVTFTARAAGELRTRLRALGAAGV----QARTFHAAALRQLRYFWPQVVG---- 103

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                           W+                           LA  +      + T 
Sbjct: 104 -------------DRQWQLLEHKFRAVGQAAVRARAGTDQDAVRDLATEIEWAKSSLITP 150

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH- 221
            +    +  L+ +  G    +AA         + E   +          +       +H 
Sbjct: 151 AEYPAAVARLRRDTPGPAEQVAA-----VYAQYEELKNQAEMLDFDDLLLHTAAILEDHV 205

Query: 222 ----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +      ++           R++       +   V+   D +     +   T +
Sbjct: 206 GVAEEFRDRYRCFVVDEYQDVTALQQRVLDAWLGERDDLTVV--GDANQTIYTFAGATPR 263

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                         P+  + +L        + V     + +   GR              
Sbjct: 264 HLLDFPRRF-----PEAVVVRLQRDYRSTPQVVAAANTLISAARGRVA------------ 306

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITAD 395
                     ++        D    E D+E  EA ++A  +R  + +     + A++   
Sbjct: 307 ------GSRLRLEGQLPPGPDPDFTEHDDEPAEAAAVARRIRKLIADGTPAAEIAVLFRI 360

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA----TLVK 451
              +   +  L   GI   +  G             S+L           +      L+ 
Sbjct: 361 NAQSEAYEQALAEAGIPFQVRGGERFFQRPEIRRAVSVLRMAGGRAADDDLVGTVRALLA 420

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
                   P    +R +    L  +   +    + +   L                   +
Sbjct: 421 PVGLTDEPPAGASARTQWESLLALVGLAEELVAVREGLDLPGFVAELDARADAAHPPTVQ 480

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
                   A   ++  +  +  LV          G+    +  +  +             
Sbjct: 481 GVTLASLHAAKGLEWDVVFLVGLVDGTLPIQHAEGDDDAIEEERRLLYVGITRARRVLAL 540

Query: 572 LPNL 575
              L
Sbjct: 541 SWAL 544


>gi|319442807|ref|ZP_07991963.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile
           DSM 44702]
          Length = 710

 Score = 46.8 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 56/470 (11%), Positives = 116/470 (24%), Gaps = 59/470 (12%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T RA  ELR     +   +       K+       +            P    
Sbjct: 62  HVLAVTFTTRAAAELRERLTMMGVARV----QAKTFHAAARGQLRYFWPRFVGDTP---- 113

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                   +L+      +    +     +  +        I  AK+              
Sbjct: 114 -------WQLLDSKFPFVARACRANGVATDKTTLSDLLGEIEWAKS----------SLIA 156

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            ED  A          +    F++I   Y   ++            +  M    E     
Sbjct: 157 PEDYPAHIGPDRRDCPVAPEQFVRIFEGYENSKVTGEGVYLDFDDLLQSMAGAIEADPGV 216

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +      ++       P   RL+       +   V+   D +     +N  T +  
Sbjct: 217 ADEFRSRYRTFVVDEYQDVTPLQQRLLDAWLGDRDDLTVV--GDANQTIYSFNGATPEHL 274

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
              SS      +P+ +  +L        + V     V     GR+               
Sbjct: 275 LRFSSR-----YPEATTVRLFRDYRSTPQVVDLANKVIGRATGRAA-------------- 315

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397
                   ++   +         E  +E  EA  +A  +   +    +  + A++     
Sbjct: 316 ----GTRLELEGQRAPGPAPEFTEYSDEAAEATGVAERISALIASGVSPSEIAVLYRINA 371

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSI-LTSLLNAIFKLNDFMAIATLVKHPLAK 456
            +  ++  L   GI+  +  G            + +L +A  +L+     A     P  +
Sbjct: 372 QSAALEYALDAAGISYQVKGGEGFFQRPEIRQGVNALTDAARRLSRRDPGAEDQPRPTPE 431

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
               +   +     L      G ++      L +LV            + 
Sbjct: 432 QLVNQVRAALVPVGLTPTEPTGAQDRARWQSLGALVDLAEELSTATPGLD 481


>gi|255073105|ref|XP_002500227.1| predicted protein [Micromonas sp. RCC299]
 gi|226515489|gb|ACO61485.1| predicted protein [Micromonas sp. RCC299]
          Length = 2297

 Score = 46.8 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 52/447 (11%), Positives = 112/447 (25%), Gaps = 18/447 (4%)

Query: 94   LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
              +  L   +   +R L    L   W +    +  D   +       + A    L + L 
Sbjct: 1844 PGAIGLVKGLRTTRRNLVKPELRQFWASMAQLLTADGRVDVLSYDAGTCAPTQRLLEELG 1903

Query: 154  DII-------DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
            D+I       D           ++A   E    +   +  F +     W     +   + 
Sbjct: 1904 DLIRVPVNTVDAAAVSLGGDRGVNAAVLEDEDAFEAGSLYFSRGRFAAWAATAPDRFTAG 1963

Query: 207  PVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
               Y+                    + +  + G   A A  ++  A       V    D 
Sbjct: 1964 AAKYRGRAAARLGAGSRADGTVPTEVTVKNAAGLTVAQAVGVTFEAGDGTATDVFHDSDD 2023

Query: 265  H----IPTAIWNTITEKSTNITSSNTTYSTHPQYSL---AKLLDFLDIKREDVKRLGNVS 317
                            ++  +        T  Q +L      L          +  G V 
Sbjct: 2024 ESIAVFDADPAVVAARRAQKVAEVRRREETKRQLALVQNPANLLRAVTAPGASRTDGGVG 2083

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
            +    R+         P    +   +  +     + K  ++ A    +           A
Sbjct: 2084 SAAAKRAGRPDAVPFIPVEKLVFARESAQGYDARLDKYAAERARRAKEASESGLTQAETA 2143

Query: 378  LRMSLDENKKKSALITADRNLARRV-KLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
             R ++++ +++   +  D +L  R+    L+  G   DI     +  T   +   +   A
Sbjct: 2144 ARDAVEDARQRREALLDDLSLVPRLGLASLSARGALADIDDNAGVDWTPPVNARDAARRA 2203

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    A      H        E   ++ +  +   A R  ++  +            
Sbjct: 2204 RGVHAT-DAGQGGPSHSRPPTLDREGDAAKEETEVMARAARWREDGAENDAPPEADAVSH 2262

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLL 523
                +   VP       +E+       
Sbjct: 2263 LAPGDPRAVPSKPMWALDENINKLRRF 2289


>gi|38637831|ref|NP_942805.1| helicase superfamily protein I [Ralstonia eutropha H16]
 gi|32527169|gb|AAP85919.1| putative helicase, superfamily I [Ralstonia eutropha H16]
          Length = 633

 Score = 46.8 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 64/550 (11%), Positives = 129/550 (23%), Gaps = 52/550 (9%)

Query: 115 LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA--DIIDIIETEEKK---WEDL 169
           L+  +   LP+  +       L    +         +LA  +       +      +E  
Sbjct: 109 LVDRFGQALPNRWRPTADYGILFPKRAHWADFLQRASLALDNPFGQAAVQGLSVNYFERR 168

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS-------PVGYQIALMRAEAEHL 222
           H L        W      L    ++W E+L     S         +   +  + A   + 
Sbjct: 169 HVLAERLPEAGWTSGNAGLWAGQRFWDEQLRGATRSHLTFPMLSRLAELLVRVNASVRNA 228

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           +  T   + +     +  A   L+ T+       I+    D       +    +      
Sbjct: 229 LALTYSHVFMDEFQDTTEAQFDLVQTIF-LGMPTILTAVGDNKQQIMRFALAMDDPFGAF 287

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                    P  S  +                           +        DTS     
Sbjct: 288 EQTFGAQRIPLLSNYR--------------------SSPELVRIQHVLAQALDTSAAHPQ 327

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402
                 I +      D + +  +  +  A  +A  +R    +      L+        RV
Sbjct: 328 SKAAASISDACCAIWDFSSVNTE-AQALARYVASQMREHQLQPNDFVLLVRQKAEDYARV 386

Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                        +AGIPL           L   + +         L+   LA       
Sbjct: 387 LA-------PAFATAGIPLRNEAAYVGAQMLQELLTEPLSE---LVLLILRLACAPRGGL 436

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
               A++AL  +      +      L   +             P     ++    +    
Sbjct: 437 TWIEAQHALANLRGIAPTDDRARRVLAQDLDAFARRFIQQHPQPPETEAMARAVIQEVEA 496

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            +         L+   T          + +   L +        D    L      +   
Sbjct: 497 FLGR-----DALIAAHTPYGQGGWLAEVENSLALHLQSSAVQATDWAATLDAYEGTKALP 551

Query: 583 TLSSLFSKIIETGSCIKA---NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
            ++   SK +E  + I     ++  W  +   +           ++    I      R  
Sbjct: 552 LMTLHKSKGLEYHTVIFIGLDDSAWWSFVQDTVDATAGFFVAFTRAKQRVIFTYTPQRGA 611

Query: 640 NFDTLILGGL 649
             +   L GL
Sbjct: 612 RVNIAPLYGL 621


>gi|294954374|ref|XP_002788136.1| hypothetical protein Pmar_PMAR006826 [Perkinsus marinus ATCC 50983]
 gi|239903351|gb|EER19932.1| hypothetical protein Pmar_PMAR006826 [Perkinsus marinus ATCC 50983]
          Length = 2234

 Score = 46.8 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 66/723 (9%), Positives = 166/723 (22%), Gaps = 70/723 (9%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
               L     +  V      MR EA       +    +A S G +                
Sbjct: 597  RGELGTPVEAGVVVVAGRAMREEAAKKAHQRRQEAALAESDGLLGLAIGFHKEHGGKAYQ 656

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
               L     ++                        +           L +     ++L  
Sbjct: 657  QSCLRMWSMYVRGCQHARRRLYEAASDEERAAAVDYATSISLDKPSDLKLIESCRRKLEE 716

Query: 316  VSNEMYGRSMVISKSFLPPDTS--DMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
               +   +S + +        +  ++      +   P   +  S+  L +A   + E   
Sbjct: 717  SDRQAVLQSELKAAMKARDLATLQEVLPAIPRDKAGPEAYRVLSEERLRDAVRRKAEPAE 776

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            +   +  + + +      IT            L  F      S    L  ++       +
Sbjct: 777  LERLITEA-ERSGAAMVYITP--------ARALVEFYGARRKSD---LMASVSYCAKLGV 824

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
             +   +  + ++ A L+     ++              E       K  +++   +  + 
Sbjct: 825  KDLPARPLERLSEAALISIAFRRWQE--------AVHEEATRTTVGKFFFELWRHRLWLR 876

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +A    +  V   +   + ++ E   +      + +   +  K    +     ++   
Sbjct: 877  KEVARLAADDAVGSAELAEAMKECERLDIEGVEGDEELAEAMRRKKLLEAIYSAKNVKAL 936

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
             + T  C     + E   +      +    +S +   +          A ++  + T   
Sbjct: 937  VEATERCRDAGIVLEDNFMAREALGDAL-GMSLIPKALELEELERLIAAAKYAGVPTTYS 995

Query: 614  DGETVKPKIEKSSTLF------------ILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
            +      +   S  +F            ++   E    +     + G       +   K 
Sbjct: 996  EEVVKSRRWNASVAVFREGKEKELLTRVVVEWKEHARYSARLDSIEGRICVEHEERLEKE 1055

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
             F+     +       EK  G      E    G      T           A+       
Sbjct: 1056 SFIVWAAWAARWKDVNEKAAGMIRSCEEDRVRGAWEAWKTYRKNWKEKERKAAEMAAAGS 1115

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
               G    ++ ++R +   +    L     +                     S    L  
Sbjct: 1116 REVGRLALESWRERSEGVREIVEALKSANDE--------------------SSLTSALSA 1155

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
              Y     R    + I   K                         +        ++ +  
Sbjct: 1156 CCYDEDLSRRAGPEAIEAAKSRLAAIRLRKAV-------------QKGGSSPAELRDLWR 1202

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
                 E            +  +   S+ E   + ++   ++   +  +    S+   L  
Sbjct: 1203 EAGWPETDVVGDRAWQLSVRRRALRSWAEEVMERRAVTHRVERCLKGEAEDPSL-FRLRA 1261

Query: 901  FAD 903
              D
Sbjct: 1262 TLD 1264


>gi|239908036|ref|YP_002954777.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
 gi|239797902|dbj|BAH76891.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
          Length = 1060

 Score = 46.8 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 62/760 (8%), Positives = 160/760 (21%), Gaps = 62/760 (8%)

Query: 185  ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--------GPIIIAGST 236
                +  +  +   L  +       +   +    A                  I++    
Sbjct: 311  LALARRLAADFPAYLARMRMLPQSQWGRLVAARLAGEDGVPDAWCRMGSGLAHILVDEFQ 370

Query: 237  GSIPATARLMS--TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
             +  +   ++    + +   G  +    D       W        +   ++   +   + 
Sbjct: 371  DTARSQWEVLRLLALESLSRGGSLYLVGDVKQAIYGWRGGDAALFDEAPADPELTQVAEP 430

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
                L          V         +   +     +              L   I     
Sbjct: 431  IFDALPHNWRSAPAIVGANNRFFGRLSDPAAAQQTTEALLGEGLAAAAPELAAAIGRAFA 490

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
              +     +    +      A  L     +    +A           +   L    I   
Sbjct: 491  GATQEVRPDYHGPQGHVRVTA--LNAEDPDTYHDAA--------RGALLTLLKAELIPRH 540

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLND--FMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
               G+ + T  +          +    +        L  HPL                  
Sbjct: 541  GPGGVAVLTRTNPQAARCAAWLVAAGIEVVTENSLRLADHPLIGQLAAMLAFLD------ 594

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
                       D +   + V  +      +       +         A L +    +   
Sbjct: 595  --------YPPDSLAFWAFVSGQELFGDLSGIDRRELAGWLAGLPRRASLSLAFKARWPE 646

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
                         G  S  D  +  V+  + +      +     F E      +      
Sbjct: 647  VWQRLIRPYLRQSGVASPYDILRSVVSGYRLIERRPADEAFIRRFLEIAHLAEN------ 700

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
                  +A+   +++      +GETV P+ E +  + ++   +++ L F  +++      
Sbjct: 701  ----DGRASISAFLEFWNDKGEGETV-PQPENAGAVRVMTIHKAKGLQFPAVVVP---YH 752

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
             +  +      ++        L   +  +G              L               
Sbjct: 753  HFHTDNKNPALVTADFPEGRLLVPDQPGLGLDYARRRARELAEQLHLLYVAWTRP-EIEL 811

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
              ++     L     +   +     +                  P+      A   T   
Sbjct: 812  HAFVPGHGPLRDKASYPLPRAMAGLFAGLGHDPADGDPIRIGAPPETPAAAPAACPTPPP 871

Query: 773  SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD--RGTLFHNIITELIKKRINKNTPE 830
                     P     R  +  +     ++    ++  RG L           R   +  +
Sbjct: 872  EPALVEPGPPMDWLPRVKVFRNVARDIRQSMRFSEKQRGELA--HAAAEAFARAGFDPAD 929

Query: 831  INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                  + + +      L P +          +       +    +      +     + 
Sbjct: 930  PAPAAARAVATALGPARLDPGLRAALAQELADMLVWLAGLDALRPAF--VAGLPERELLD 987

Query: 891  IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
             +          D +       + + D+KTG       AQ
Sbjct: 988  ADGS----RHRPD-LFAASPEAILVADFKTGRPATDHEAQ 1022


>gi|294668059|ref|ZP_06733179.1| exodeoxyribonuclease V beta chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
 gi|292601874|gb|EFF45701.1| exodeoxyribonuclease V beta chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
          Length = 1268

 Score = 46.8 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 79/796 (9%), Positives = 179/796 (22%), Gaps = 57/796 (7%)

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTVANHPNGA---- 256
             +    V + +   +A+A      T+  I ++     +      + S V      A    
Sbjct: 265  DDLVDGVAHALQGAQADALVKRLRTQYAIALVDEFQDTDDRQWSIFSNVFGEGPLAQAAG 324

Query: 257  ---IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
                +    D       +     ++    +     +    ++       L        + 
Sbjct: 325  LEPALFLIGDPKQAIYGFRGGDVRTYLAAAVTAELAPPLSHNFRSRPGVLAAIDALYAQA 384

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI-------EADN 366
            G     +                 +    D +      + +                A  
Sbjct: 385  GYADAFLTDGIAFHPVRAGTKRVDEDLQRDGVTAPALTLWRAPEPPPPAKGKPKPWSAGR 444

Query: 367  EREEAISIAIALRMSLDENKKK--------------SALITADRNLARRVKLELTRFGIN 412
             RE A +  +A         +                A++      A R++  L   GI 
Sbjct: 445  ARELATAACVAAIRGWLAGGRDGTATVCGRPVQAGDIAVLVRSHGEATRIQQALGAVGIP 504

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA---KN 469
               +    L  T  +  L +LL A+    D   +   +   L                ++
Sbjct: 505  AVAAGKQSLFATEEALELLALLQALLDPGDDSRLRAALATVLIGEDAIAIAALERDGERH 564

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                      +  +      +L+ +  AT            R      +LA LL +   +
Sbjct: 565  RRWQQQALDWRERWQRGGPLALIGELGATHGQRLLALVDGERRLTNYLQLAELLQEADAR 624

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTK-LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
             + P                  +  +    +  + V +    K   L +         + 
Sbjct: 625  ALGPHGLVDWLSRRIANADDNDEAQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIG 684

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                  G     +A E    +    + +       +++        ++RLL         
Sbjct: 685  RSDKGAGRHCVVHAPELGRQLHWKTERDDPSWSAAEAAWKQEQRAEDARLLYVGLTRAEH 744

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD---------FEMANGTRHLIY 699
                               M   L+        G    D            A     +  
Sbjct: 745  ALWIASGPFHQHERTALSAMLRALDALQGAAGEGTVVVDTSTPPAHLPRLPAPSEAQVPL 804

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
             R+ + +  P        +L         D +          + +   +           
Sbjct: 805  ARNPQRHIAPEWWVYSFTQLASADAGAATDPMASATVVGSGGSDEPSGSEAVAVAVATDA 864

Query: 760  FP-PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHNIIT 817
             P         +            +A +                  +   RG    + + 
Sbjct: 865  EPFDPRFAGNRFGVVMHDVFERCDFAAWQAWRPGQPAPDGQAAPILEALQRGGYAKDDLD 924

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
            + ++      T  I H +   +       ++P             +  + ++    +   
Sbjct: 925  DGLRML----TALIGHTLTVALPEGTRLADVPEPQRRNEMEFHFAMRPTRVDALLALLHR 980

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL----- 932
               +             G+ +TG  D +     G   + DYK+   P    A        
Sbjct: 981  FGVVGDRQAFGARQRLEGL-MTGLID-LTYSVDGRWYVLDYKSNRLPSYAAAALARAMAH 1038

Query: 933  --IDPQLSLEAAALKA 946
               + Q  +   AL  
Sbjct: 1039 SEYELQALIYTVALHR 1054


>gi|308452970|ref|XP_003089251.1| hypothetical protein CRE_03554 [Caenorhabditis remanei]
 gi|308241434|gb|EFO85386.1| hypothetical protein CRE_03554 [Caenorhabditis remanei]
          Length = 2053

 Score = 46.8 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 50/690 (7%), Positives = 133/690 (19%), Gaps = 50/690 (7%)

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
             + +        K P+I+               +              D H  +   + 
Sbjct: 337 YQKNQLGPQGTLEKHPVILVDEPDPGRRERAGPRSGGRTARPRTAGARFDPHPASTRGHP 396

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR-------------LGNVSNEM 320
              ++      +  +  H         D       D +              L       
Sbjct: 397 HGRRAPLRRWQHRPFPRHHLGRRLGHRDPPRRGSGDHRPQPRFHPRHRRRVHLDLPRTPQ 456

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
             R  V             R    L    P              D+ R EA+++A     
Sbjct: 457 PRRRAVDPDRSRLDQRHQARRPARLGPGPPPHVHA----RHHRHDHLRAEALTVAFGFAS 512

Query: 381 SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
           ++        ++ ++   +     +L        ++ G+        +   +        
Sbjct: 513 AI---GSHVGMVRSNNQDSGFAGTQL------FLVADGMGGHAGGDVASALATQAMARLD 563

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
            D +A        L +       + R+  +               M +   +        
Sbjct: 564 EDELATPEAATSTLRQSLLDANRMLRSTVSDRPELSGMGTTFCGFMTVDDHLALAHIGDS 623

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD--WTKLTV 558
               +     +   +D      LVD          T+            +          
Sbjct: 624 RLYLLRDGSLQQITKDHTFVQRLVDSGRLTEEEAKTHPRRSVHMRVFGDVDSNNRHCRRH 683

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                          +L     G+  ++            +   ++    +   +     
Sbjct: 684 RRDHGDPQPPGAVPLHLPHRPRGRRAAAPADASGHRHRARRRTGVDPARQLH--VPARRD 741

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
           +          I        L+    +             A        + + +  +   
Sbjct: 742 REDPAGRLPRRIPDPQPRGALDGRPQVRRHPVPARPRPRPAAAVLAGGHVGARVPARPR- 800

Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                             +    +    + P       +R L         + + R Q  
Sbjct: 801 --------HLAALLRPVPV----AAVPRDGPHRVDHPRRRPLPRRRPHREPDARLRAQAL 848

Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR---ILKLDF 795
            +  R +     +    R  P    + +   +         +                  
Sbjct: 849 RELARPVRRPAGRQLPARAGPLRHGQRRHDRHGPRPGLPAGHPGLRERLHHPQPRRGARP 908

Query: 796 IPHFK--KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
               +  +      R    H +      ++  +  P +      +          P H  
Sbjct: 909 HRPLRRARGVPAARRPRPAHRLRRAGRLRQAARRRPRLRVRAAGLRGRRRRDPRDPAHRP 968

Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
                   +I           + +   + +
Sbjct: 969 HRAVPRGRRIRARLELDH--RRPAAAPVEL 996


>gi|38638628|ref|NP_944329.1| gp21 [Burkholderia phage Bcep1]
 gi|34486010|gb|AAQ73367.1| gp21 [Burkholderia phage Bcep1]
          Length = 417

 Score = 46.8 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 9/161 (5%)

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
           P   +  T S S  ++  N P +V   + +                 GT  H +    ++
Sbjct: 17  PGVVEHSTLSISGRERWRNCPASVTLSKGM-------PDNSSPAAAEGTCAHTVGEFYVR 69

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
           +  +          +  + +  E  +L       W     +   ++ +    +     + 
Sbjct: 70  QHFD-LPGAAPRGTEAPLQAVPEGLDLKGKTVEEWNDDLRRHGKAYRDFIISLIPPGVEA 128

Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI-TDYKTG 921
           FV++  ++A ++I   L G AD +       V I  DYK G
Sbjct: 129 FVSLEQRVAAKTIDGRLFGTADCLIWCPGARVLIVVDYKYG 169


>gi|317402575|gb|EFV83137.1| hypothetical protein HMPREF0005_02249 [Achromobacter xylosoxidans
           C54]
          Length = 818

 Score = 46.8 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 64/632 (10%), Positives = 158/632 (25%), Gaps = 39/632 (6%)

Query: 72  STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
             +LP   +L  +      + +LL + L  P    +  L L R             +   
Sbjct: 77  PAVLPE--TLRRLSPLAPRSVILLPHELPDPYP--RGTLALCRAWAEENRCELLGPRSFG 132

Query: 132 PESPLS--------LPISPANAIWLAKN---LADIIDIIETEEKKWEDLHALKNEKYGMW 180
            + P +        +         LA++   +A ++D  E     +    +L +E     
Sbjct: 133 AQRPHAGLNLSQHPVLARAGRVALLAQSRSIMAAVMDWAEDVHIGFSTAVSLGDEAVVG- 191

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII--AGSTGS 238
                  L     Y        +    +          +      +  P+I+  AG   +
Sbjct: 192 -------LSKVLDYLASDPRTDSIVLYLEDVGPAREFMSTLRAAASVKPVIVLKAGRADT 244

Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
             A   +            V   +       +            +  +  S  PQ ++  
Sbjct: 245 DSA-DAIFDAALRRAGAVRVRYFVQLFSAVKVLGYTRRPKGRRVALISNGSGPPQLAMDL 303

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
           +     + R ++      +          S + +                +         
Sbjct: 304 IGPDAAVLRAELAPATQRALAAMLEPDAASANPVITYVPLTPERIRAILDVVLDDAGVDG 363

Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
           V ++ A +   +  ++A  L     + +K            R ++  L          AG
Sbjct: 364 VLVLLAPDALADMPAVARELAQIAPKARKPVVTCFMGDAGMRPLRRMLD--------DAG 415

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
                T  S+        +   +    +    + P      P+   +R   A      R 
Sbjct: 416 TSAFRTPESAA--DAFGVLATHHYNQQLLLQTQPPEPATHVPDLAAAREILARVRADCRR 473

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
             N+ ++  L SL    +     +      +SR               I           
Sbjct: 474 ELNTSEVRALLSLFYVPLRDMPLDVAAAEPESRPMAIRVRRDPQFGPVIRFGAGGPDAVL 533

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
           +  +       ++ +    +     +              E  +    L S+++     I
Sbjct: 534 SQSDRGIDLPPLNGFLARQMIERSRLWRRVLAPRVGHLAAEALQQALVLVSEMVSELPDI 593

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
           +   I+ +      +    ++  + +        T ++       +           +  
Sbjct: 594 ETLDIDPLYAGETHLRAGGLRMTLAEKPG---CETPQTAGYPHMAIHPYPARLVQVRRFA 650

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
              P++ R ++ +      +   G +     M
Sbjct: 651 DGIPWVLRPIRPEDGQPLQDFIRGLSERSRYM 682


>gi|91783265|ref|YP_558471.1| putative ATP-dependent DNA helicase, Rep [Burkholderia xenovorans
           LB400]
 gi|91687219|gb|ABE30419.1| Putative ATP-dependent DNA helicase, Rep [Burkholderia xenovorans
           LB400]
          Length = 520

 Score = 46.8 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 47/496 (9%), Positives = 118/496 (23%), Gaps = 40/496 (8%)

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
           V E +     L   + +  V +      L  L+  +       + D    +  +   +  
Sbjct: 59  VGELRSRLTRLGVGDSDRLVLSTVHSFCLTELVFPYAKMAGLQMPDPLVVASPAQARALF 118

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
           +  + A+ L    +         + L     ++    W   +    +  + +   L++  
Sbjct: 119 SDAYRAQ-LGG--NAPAWFRMACDRLRRTILDRGSDEWRAGSARETMVVEAYENLLLQNG 175

Query: 204 ASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                G  +A ++         H ++     ++I           R++  +     G  +
Sbjct: 176 LIDFDGLVLAGLQLVEKNEWVRHAIRAKYPVVVIDEYQDLGVPLHRIVLALLQA--GVRI 233

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
           +   D       +           +      +       +  D +      +        
Sbjct: 234 IAVGDPDQSIYGFTGAKPDLLTALAGLQQMESVTLKLNYRCADRIIAASRALLPEPAEFR 293

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
              GRS  I        +   +    L   +P + +     A                  
Sbjct: 294 SHDGRSGEIH-IHRLECSIREQADYALGTLVPALLEANPSWA------------------ 334

Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNAI 437
                      A++    N    +       G+       G P+  T  +  LT      
Sbjct: 335 -------PGDIAVLYRTLNEGAPIAEAADALGLQYFRLDNGSPIKRTRVTEWLTDAARWC 387

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                   I+      L K           ++ L     R     + + D    +   + 
Sbjct: 388 SGGWQTGEIS---LSQLLKAWRRMYRSVTHESELLATRKRLISALFSLRDSALPLRRWLL 444

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
             + +      +      D++  +  +        PL  +        G +      + +
Sbjct: 445 ALRRDVLDELLEQEPGLADEKDNLEELTAAAGAGGPLRAFTVEIFGNQGKMPRVKQDESS 504

Query: 558 VTCLQNVCLDEHRKLP 573
            +    V     R   
Sbjct: 505 ASIWMRVLALRQRWRA 520


>gi|51893311|ref|YP_076002.1| ATP-dependent deoxyribonuclease subunit A [Symbiobacterium
            thermophilum IAM 14863]
 gi|81610460|sp|Q67MD5|ADDA_SYMTH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|51857000|dbj|BAD41158.1| ATP-dependent deoxyribonuclease subunit A [Symbiobacterium
            thermophilum IAM 14863]
          Length = 1371

 Score = 46.8 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 43/446 (9%), Positives = 96/446 (21%), Gaps = 50/446 (11%)

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
             +  +  +      L + +      L   +          S+                  
Sbjct: 946  LAYHAVREVTRLANLAEELRVLYVALTRARERLVLVGSVKSLRAACARWSRGAGAPGWPL 1005

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
               L                S          A          R + GE            
Sbjct: 1006 PESLL--------------LSARSYLDWIGPAVLRHADGAPLRELAGEGGTAPGSGPDPA 1051

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
                     +  +D   L  + +           +        L+    E    +    F
Sbjct: 1052 LAGDPSRWEVTIWDPASLQQILQPRPEAAPPAVDWARIGAAEPLDRPLDEALHARLRARF 1111

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                                      +   +   G     +              ++   
Sbjct: 1112 ---------------------GWRYPFEPVVRRFGKLSVTELKGYFDPDAEAPAEEM--- 1147

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
               P  +   P     A P   S   +++         +    +  F+   ++    T+R
Sbjct: 1148 --APPAEEMAPPAEEMAPPAEGSAPPVEEPAPSTEPSSSTFAARPRFLQQDRRALSPTER 1205

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI-----IWRHLFHKI 863
            GT  H ++  L   R          L + +       +                 L  +I
Sbjct: 1206 GTAVHVVMQHLDLSRPLDAEGVGRQLAEMVERELLTPQQAAAVDAEAIADFFASPLGLRI 1265

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMA---IESIGIHLTGFADRIDLLKSGFVDITDYKT 920
              S     +++  ++      +   +         + + G  D +   + G   + DYKT
Sbjct: 1266 LQSRDRVSQELSFTLAVPAAEVYGDLPPEAAAGDVVIVQGMIDLLLEEEDG-YVLVDYKT 1324

Query: 921  GDNPKKETAQKLIDPQLSLEAAALKA 946
                  + AQ+    Q+     A++ 
Sbjct: 1325 DRRDPVQAAQR-YTTQIRFYRRAVEE 1349


>gi|328884887|emb|CCA58126.1| ATP-dependent DNA helicase UvrD or PcrA [Streptomyces venezuelae
           ATCC 10712]
          Length = 726

 Score = 46.5 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 60/673 (8%), Positives = 141/673 (20%), Gaps = 76/673 (11%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           +   +    R   L P   ASV     T RA  E+R    ++           ++     
Sbjct: 53  ITHRIAYGVRSGRLQP---ASVLAVTFTNRAAGEMRGRLRQLGAGGV----QARTFHSAA 105

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
             +              V       +L RL+      + D           +        
Sbjct: 106 LRQLQFFW------PKAVGG-----DLPRLLERKIQLVADAAARCRVRLDRNELRDVTGE 154

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
           I  AK    +            D  A+  +         A+ +      + +   + +  
Sbjct: 155 IEWAKVTQTV----------PADYPAVVAKSLRDAPRDPAE-ISQIYAMYEQLKRDRSVI 203

Query: 206 SPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                 +  +    +       ++      ++       P   RL+       +   V+ 
Sbjct: 204 DFEDVLLLTVGILQDRHDIADQIRSQYQHFVVDEYQDVSPLQQRLLDLWLGDRDNLCVV- 262

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D       +   T        +      HP  ++ KL+       + V     + ++ 
Sbjct: 263 -GDASQTIYSFTGATPDHLLNFRTR-----HPGATVVKLVRDYRSTPQVVHLANGLLSQA 316

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
            GR+                       ++ + +    +    E  +E  EA   A  +R 
Sbjct: 317 RGRAA------------------DHRLELISQRDPGPEPTYTEYADEPTEAEGTARRIRD 358

Query: 381 --SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS----ILTSLL 434
             +      + A++      +   +  L   G+   +                  L    
Sbjct: 359 LIAAGVPAGEIAVLYRINAQSEVYEQALADAGVPYQLRGAERFFERTEVREAGIALRGAA 418

Query: 435 NA--------IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
            A          +       A L                R +       +R  ++     
Sbjct: 419 RAGGNDSLLDAAEDLPSQVRAVLSTKGWTSRPPAGSGAVRDRWESLAALVRLAEDFARAK 478

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
              +L        +          +        A   ++     +  L            
Sbjct: 479 PGATLSDLVAELDERAAAQHAPTVQGVTLASLHAAKGLEWDAVFLVGLTEGMLPITYAKT 538

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
           +  + +  +  +                L     G+        +        A      
Sbjct: 539 DEQVEE-ERRLLYVGVTRARLHLTLSWALSRSPGGRASRRPSRFLKGLRPGSGALGTVTP 597

Query: 607 DIITRLIDGETVKPKIEKSSTL--FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
                   G     +      +   + G   +       L        +      +    
Sbjct: 598 GASGSFERGGPAARRRGPRGPVLCRVCGVTLTEAGAMKLLRCEDCPSDMDEALYERLRDW 657

Query: 665 SRVMQSDLNLKTA 677
                 +L     
Sbjct: 658 RSEQARELGQPAY 670


>gi|296532160|ref|ZP_06894921.1| double-strand break repair helicase AddA [Roseomonas cervicalis
           ATCC 49957]
 gi|296267519|gb|EFH13383.1| double-strand break repair helicase AddA [Roseomonas cervicalis
           ATCC 49957]
          Length = 208

 Score = 46.5 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 46/156 (29%), Gaps = 15/156 (9%)

Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                      +R  RG L H ++  L         PE     ++ +   F         
Sbjct: 32  AAPHGRADPTGERFRRGRLIHALLQHL---------PEHPAAERRALAERFLARPGHGLT 82

Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912
           +        ++    LEH   + +         P    +      L G  DR+ +     
Sbjct: 83  EADRTATLEEVL-RLLEHPALVAAFGPGSLAEAPIAGMVNGQ--RLAGQVDRMLITPE-R 138

Query: 913 VDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKA 946
           V I DYKT   P    +    L   Q++   A L+ 
Sbjct: 139 VMILDYKTNRPPPSEAKDVPTLYLRQMAAYRALLRQ 174


>gi|21245048|ref|NP_644630.1| exodeoxyribonuclease V subunit beta [Xanthomonas axonopodis pv. citri
            str. 306]
 gi|21110779|gb|AAM39166.1| exodeoxyribonuclease V beta chain [Xanthomonas axonopodis pv. citri
            str. 306]
          Length = 1243

 Score = 46.5 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 80/819 (9%), Positives = 191/819 (23%), Gaps = 102/819 (12%)

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTVANHPNGA---- 256
             +    V + +   +A+A      T+  I ++     +      + S V      A    
Sbjct: 385  DDLVDGVAHALQGAQADALLKRLRTQYAIALVDEFQDTDDRQWSIFSNVFGEGPLAQAAG 444

Query: 257  ---IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
                +    D       +     ++    +     +    ++       L        + 
Sbjct: 445  LEPALFLIGDPKQAIYGFRGGDVRTYLAAAVTAERAPPLSHNFRSRPGVLAAIDALYAQA 504

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI-------EADN 366
            G     +                 +    D +      + +                A  
Sbjct: 505  GYADAFLTDGIAFHPVRAGTKRVDEDLQRDGVTAPALTLWRAPEPPPPAKGKPKPWSAGR 564

Query: 367  EREEAISIAIALRMSLDENKKK--------------SALITADRNLARRVKLELTRFGIN 412
             RE A +  +A         +                A++      A R++  L   GI 
Sbjct: 565  ARELATAACVAAIRGWLAGGRDGTATVCGRPVQAGDIAVLVRSHGEATRIQQALGAVGIP 624

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
               +    L  T  +  L +LL A+    D   +   +   L          + A  ALE
Sbjct: 625  AVAAGKQSLFATEEALELLALLQALLDPGDDSRLRAALATVLIG------EDAIAIAALE 678

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
                R  +     +D +         +     +         +     V     +   + 
Sbjct: 679  RDGERHRRWQQQALDWRERWQ-----RGGPLALIGDLGATHGQRLLALVDGERRLTNYLQ 733

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
                 +       G   + DW    +                   ++  +      ++ +
Sbjct: 734  LAELLQEADARALGPHGLVDWLSRRIANAD-------------DNDDAQQLRLESDARRV 780

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
            +  +  K+  +E+  +    +      P  +    + +    +  L   D +    +   
Sbjct: 781  QIVTLHKSKGLEYPLVFLPYVGIGRKPPDQKPGKRVIVYRDGKRCLHWPDDV--DSMEWK 838

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
               +   K           + L  AE  +  A+  F     T      R+L         
Sbjct: 839  AIKEEWKKEQDAEDARLLYVGLTRAEHALWIASGPFHQHERTALSAMLRALDALQGTAGE 898

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY--KRPKPFPPLEAQPRTY 770
               +                   Q  L    +     +   Y   +        A     
Sbjct: 899  GGVVVDTTTPPAHLPRLPAPSEAQVPLARNPQRHIAPEWWVYSFTQLANADAGAATDPMA 958

Query: 771  SFSEIKQLIND-PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL-------IKK 822
            S + +    +D P    A  +        F         G + H++            + 
Sbjct: 959  SATVVGSGGSDEPSGSEAVAVAVATDAEPFDPRFAGNRFGVVMHDVFERCDFAAWQAWRP 1018

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDII--------------------------- 855
                   +   +++ +    + +++L   + ++                           
Sbjct: 1019 GQTAPDGQAAPILEALQRGGYAQDDLDDGLRMLTALIGHTLTVALPEGTRLADVPEPQRR 1078

Query: 856  -WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914
                    +  + ++    +      +             G+ +TG  D +     G   
Sbjct: 1079 NEMEFHFAMRPTRVDALLALLHRFGVVGDRQAFGARQRLEGL-MTGLID-LTYSVDGRWY 1136

Query: 915  ITDYKTGDNPK-------KETAQKLIDPQLSLEAAALKA 946
            + DYK+   P        +  A    + Q  +   AL  
Sbjct: 1137 VLDYKSNRLPSYDADALARAMAHSEYELQALIYTVALHR 1175


>gi|239929054|ref|ZP_04686007.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291437391|ref|ZP_06576781.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340286|gb|EFE67242.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 735

 Score = 46.5 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 56/663 (8%), Positives = 136/663 (20%), Gaps = 69/663 (10%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           +SV     T RA  E+R    ++           ++       +       +     P  
Sbjct: 69  SSVLAVTFTNRAAGEMRGRLRQLGAVGV----QARTFHSAALRQLQYFWPKAIGGAMP-- 122

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    RL+      + D                    I  +K    +         
Sbjct: 123 ---------RLVDRKIQLVADAAAACRIRLDRGELRDVTAEIEWSKVTQTVPADYAAAAV 173

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
           K          +                  + +   E          +  +    +    
Sbjct: 174 KAGREAPRDPAEIAQ-----------LYSAYEDLKRERAVIDFEDVLLLTVAVLQDRPDV 222

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +      ++       P   RL+           V+   D       +   T    
Sbjct: 223 AEQVRAQYQHFVVDEYQDVSPLQQRLLELWLGDRENLCVV--GDASQTIYSFTGATPDHL 280

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
               +      HP  ++ KL+       + V+    +  +  GR+               
Sbjct: 281 LDFRTR-----HPGATVVKLVRDYRSTPQVVRLANGLLAQARGRAA-------------- 321

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397
                   ++ + +    +    E  +E  EA   A  +R  +D      + A++    +
Sbjct: 322 ----DHRLELVSQRAAGPEPVFTEYTDEPAEAEGAARRIRELIDSGVPASEIAVLFRTNS 377

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +   +  L   G+   +                  L    +     A+           
Sbjct: 378 QSETYEQALADAGVPYQLRGAERFFDRPEVRKAGIALRGAARFGGNDALLD-------DA 430

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                 +    +           +       +SL       Q      P         + 
Sbjct: 431 PDLPSQVRAVLSGEGWTPQPPAGSGAVRERWESLAALVNLAQDFAAARPGATLADLVAEL 490

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +               L +  + K      + +    +  +        ++  +   L +
Sbjct: 491 DERAGAQHAPTVQGVTLASLHSAKGLEWDVVFLVGVAEGMMPITYAKTDEQVEEERRLLY 550

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
               +    L      + S            +  L  G         ++    +    S 
Sbjct: 551 VGVTRARERLHLSWALSRSPGGRPNRRASRFLDGLRPGSGTAAGRGGAAGTGGVERGFSG 610

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRV----MQSDLNLKTAEKYIGQAAHDFEMANG 693
             +       G  +    +       L+      +    +  +              A  
Sbjct: 611 AASVPAAPGRGRRQRSPARCRVCGRTLTDAGEMKLMRCEDCPSDMDEGLYERLHAWRAGQ 670

Query: 694 TRH 696
            R 
Sbjct: 671 ARR 673


>gi|291007027|ref|ZP_06565000.1| hypothetical protein SeryN2_21110 [Saccharopolyspora erythraea NRRL
            2338]
          Length = 6858

 Score = 46.5 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 72/815 (8%), Positives = 179/815 (21%), Gaps = 21/815 (2%)

Query: 55   RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELAR 114
            R  + L  E     G    +   I  L                ++   + N+  L    R
Sbjct: 1861 RLARRLVDELAHRYGGHVRLADAIG-LHHGERGFRRLGARWLRDVPQRLENLVALAH-RR 1918

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET------EEKKWED 168
            L      +   +                 + + L +++  ++D +         +   + 
Sbjct: 1919 LGHRVGRRAGAVPLWEEINEEFDRASGVPSLVEL-RDVRRLVDAVRRRYPDVGYDVTADH 1977

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
            L  +  +          +            + +           A  RA+A  L    + 
Sbjct: 1978 LRRMVRDFEPGDTRPVTEDDLSYLIGLVGPVKDHGRPVTFAALRAGWRADAGTLADRGRS 2037

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
             ++    + ++  TA  M+   +    A  L  L        W                 
Sbjct: 2038 ALVGLQLSLNVLTTAEAMAARPSVQERANQLMTLVGEERGVPWRPTDGDRARRLEELRAE 2097

Query: 289  STHPQYSLAKLLDFLD-IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
                   +    D         +  L       Y  +  I            R T + + 
Sbjct: 2098 GEWLAEEMRAARDSTGDPAEAALLELAREYRNGYELARSIGAYISDARDGWARLTSLSQL 2157

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELT 407
             +    +  +   L     E +      + LR ++D           +  +   ++  + 
Sbjct: 2158 AVSVFGERPNRDQLAMVAEETDRLPPRLVRLRQAVDGEAGLRFGEIDEARIEEHLRAVVR 2217

Query: 408  RFGINIDISAGIPLSTTLHSSILTS-LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
            R+    + +   P++      +    L  A      +  +  +      +     +    
Sbjct: 2218 RWADGFETAGQHPVTDADVRHLAELVLGQAREGEVTWDGLHRVWTAQRNEVAERTERALA 2277

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
            A       A             +  +               W+   + +   L  L    
Sbjct: 2278 ALRDSLARAAADLAALPSWYQSELRMRADGIAGVVGESAGLWRPSDARQASSLEELRTHA 2337

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
             +            + S  G L ++D               +                 +
Sbjct: 2338 EVVATEARAARVAFEVSGLGPLLLADELVHRFGGDALGVDGQDGLSRGDRQRIVRLGALA 2397

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
                 +   + ++A+ + +   +   +     +           L  L    L    +  
Sbjct: 2398 AVLADVRRAADLRADDLRYAREVGEALAETVPELSDSVGVAPEHLRGLVREWLGLGDVDP 2457

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
              + +                    L    +     +             ++        
Sbjct: 2458 VSVADVRSLAERLVVLREESGRPVALAELGSSWVSERVDAALAGLLSAYDVLAGYLAGRP 2517

Query: 707  NIPTIASRWLQRLLVLGGTDFFDNLKKRG-------QCYLDWTRKLDYTTKQPHYKRPKP 759
                 A R       L      ++  +         +   +    L         + P  
Sbjct: 2518 ESHRPALRAAMAEASLYRHQPRESWSREDGRHVRHLEELREELDALAAGVMLEADEPPSA 2577

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK-DPDRTDRGTLFHNIITE 818
               +     +      + L   P    AR            +   D  D G L + +   
Sbjct: 2578 GESVARSGGSGLSELFEMLPEAPRPSAARESSGGSPEGADGRTGVDGLDLGELINALWNV 2637

Query: 819  LIKKRIN--KNTPEINHLMKQIIDSHFEKENLPPH 851
            + ++  +   +           +D   E E+L P 
Sbjct: 2638 VTEQPRSGQDSPRTTEATAADELDPDPEAESLDPE 2672


>gi|302521482|ref|ZP_07273824.1| amino acid adenylation domain-containing protein [Streptomyces sp.
            SPB78]
 gi|302430377|gb|EFL02193.1| amino acid adenylation domain-containing protein [Streptomyces sp.
            SPB78]
          Length = 2818

 Score = 46.5 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 68/703 (9%), Positives = 146/703 (20%), Gaps = 31/703 (4%)

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179
              +L      L    P     S   A  LA+ LAD  + I         L     E    
Sbjct: 1401 HQELAGHRGKLVDLDPARATASDEAATLLAEFLADDEEEIGLRGATRATLRLRPAED--- 1457

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
                        +     RL         G   AL R     L++     +++ G T   
Sbjct: 1458 ----------RLTGPLPPRLRPDGTYLVTGAFGALGRLLCRTLVRRGARRLVLLGRTPLP 1507

Query: 240  PATA--------RLMSTVANHPN----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
            P  A        R    +A   +    GA V+         A +                
Sbjct: 1508 PRAAWRATDPDSRAGRAIALVRDIEALGASVVLAPVDLTDEAAFTGWLATYRAGDPPPLR 1567

Query: 288  YSTHPQYSLA-KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
               H    +   LL  +D +  D       +        +  +            + +  
Sbjct: 1568 GVFHLAGQVRDTLLADIDREAFDTVHAPKTAGAHLLDKHLRDEPLEHFVLFASVASLLTT 1627

Query: 347  NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406
                N     + +  +          ++A+          ++  L     +      L  
Sbjct: 1628 AGQTNYAAGNAFLDALAHRRRAAGLPALALDWGPWATGMIEELGLEAHYLHSRGMSSLSP 1687

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
                  ++   G  L+  L  + +      +   +   A+   +          ++    
Sbjct: 1688 DAGMSVLERVLGQDLAQ-LVVATVVDWRTFLAWYDTPPALVQDLAASAGDQAADDEGDLL 1746

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
            A         R    +     L + VL     + +           S    EL       
Sbjct: 1747 AAFRAAGPEERRALVTERFTRLVAAVLRAAPEEIDPAGGLGALGLDSLLAMELRARSQAE 1806

Query: 527  ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
            +      +        +        + T+       +          +       +   +
Sbjct: 1807 LGVAPPVVALLSNTPVAELATRLHEELTERLARDELSGAQVTVELWDDDGDFPLTQNQKA 1866

Query: 587  LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            L+            N    +++   L             +    L T            +
Sbjct: 1867 LWFLKQLNPDGHAYNIGGAVEVRAVLDPELMFAAVRRLVARHPALRTGFHLREGRPVQRI 1926

Query: 647  GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT---RHLIYTRSL 703
            G   E        +      + +  ++   A   +   A            R +I     
Sbjct: 1927 GDGREPDLGWFDVEGQEWEEIKERIIHEYRARYDLEHDALFRFRLFRRGPDRWVIMKAVH 1986

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
               +       +++ LL +                  +   L+   +             
Sbjct: 1987 HIVSDAVSTFTFIEELLEVYEALKEGREPALAPVPARYVDFLNQQNRFLASPEAARMRDY 2046

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                       +  L  D      +            +     
Sbjct: 2047 WRDHLPAEVPLL-DLPTDRPRPAVQTHNGASEFFVLDEALSAR 2088


>gi|297192217|ref|ZP_06909615.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197720135|gb|EDY64043.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 757

 Score = 46.5 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 61/581 (10%), Positives = 140/581 (24%), Gaps = 89/581 (15%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           +   +    R   L P   ASV     T RA  E+R    ++           ++     
Sbjct: 87  ITHRIAYGVRAGILQP---ASVLAVTFTNRAAGEMRGRLRQLGAGGV----QARTFHSAA 139

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
             +       +   + P    +++  +A      R +L                      
Sbjct: 140 LRQLQYFWPKAVGGDMPRLLERKIQLVAEAAARCRIRLDRN------------------- 180

Query: 146 IWLAKNLADIIDIIETEEKK---WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
                 L D+   IE  +       D  A  ++         A+ +      + +   + 
Sbjct: 181 -----ELRDVTGEIEWAKVTQTVPADYPAAVSKSLRDAPRDPAE-ISQVYAMYEQLKRDR 234

Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
           +        +  +    +        +      ++       P   RL+           
Sbjct: 235 SVIDFEDVLLLTVGILQDRHDIADHVRRQYQHFVVDEYQDVSPLQQRLLDLWLGDRESLC 294

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
           V+   D       +   T        +      HP  ++ KL+       + V     + 
Sbjct: 295 VV--GDASQTIYSFTGATPDHLLNFRTR-----HPGATVVKLVRDYRSTPQVVHLANGLL 347

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
            +  GR+                       ++ + ++   + + +E  +E  EA   A  
Sbjct: 348 GQARGRAA------------------EHRLELISQREPGPEPSYVEYADEPAEAEGTARR 389

Query: 378 LRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS----ILT 431
           +R  +D      + A++      +   +  L   G+   +                  L 
Sbjct: 390 IRELIDAGVPAGEIAVLYRINAQSEVYEQALADAGVPYQLRGAERFFERQEVREAGIALR 449

Query: 432 SLLNAIFKLNDFMAIATLVKHPLA---------------KFGFPEKYLSRAKNALELVAL 476
               A         +  L     A                          A   L    +
Sbjct: 450 GAARAGGNDALLDDVEDLPSQVRAVLSTKGWTTEPPAGSGAVRDRWESLAALVRLAEDFV 509

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
           R    +     +  L     A            S  S +  E   + +  + + + P+  
Sbjct: 510 RARPQATLADLVAELDERAAAQHAPTVQGVTLASLHSAKGLEWDAVFLVGLTEGMMPITY 569

Query: 537 YKTNKNSTCGNLSI---SDWTKLTVTCLQNVCLDEHRKLPN 574
            KT++        +       +L ++    +      +   
Sbjct: 570 AKTDEQVEEERRLLYVGVTRARLHLSLSWALSRAPGGRASR 610


>gi|330954206|gb|EGH54466.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae Cit 7]
          Length = 1230

 Score = 46.5 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 96/964 (9%), Positives = 223/964 (23%), Gaps = 148/964 (15%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-- 170
               +  W         DL        P   A A      +    + +   +   + L   
Sbjct: 271  FEKLAAWAADDTQEALDLGTGFTRLTPDGIAEAWKSEPPVHPAFEAMAQLKAALDGLPKP 330

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEHLMKGT 226
                 ++   W+ A        +    R  E+     +    A +          L++  
Sbjct: 331  DAAVLQHAAQWVSAR------FEEEKRRRAEMGFDDMLLRLDAALHGAGGERLATLIREQ 384

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITS 283
                +I     + P   R+  ++           +    D       +      +     
Sbjct: 385  FPVALIDEFQDTDPVQYRIFDSIYRLEANDEQTGLFLIGDPKQAIYAFRGADIYTYLRAR 444

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              T    H   +  +    +      V        +  G  +   +       SD     
Sbjct: 445  QATDGRWHTLDTNYRSSHAMVESVNHVFTRAEQREQGRGAFLFRDEHGNQVPFSDALAQG 504

Query: 344  ILENKIPNIQKCFS-DVALIEADNE-------REEAISIAIALRMSLDENKK-------- 387
              E    +     +  V  +++D         ++ A S A  +   L+  ++        
Sbjct: 505  RKETLHVDGTPLTALTVWHLQSDQPVSGVVYRQQLAASCASEIVRLLNAGQQGRAGFVTP 564

Query: 388  ----------KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                        A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A
Sbjct: 565  DNTLRGLRPADIAILVRDGKEAQAVRQQLTARGVRSVYLSDKDSVFAAQEAHDLLSWLKA 624

Query: 437  IFKL---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              +        A    +   L                  ++  R  +  +    +  ++ 
Sbjct: 625  CAEPDSERTLRAALACITLDLPLAELERLNQDELAWERRVMQFRAYRAIWRSQGVLPMLR 684

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
              +        +      ++  D E  +  + H+ + +         + +          
Sbjct: 685  RLLHDFALPQTL------MTRNDGERVLTNLLHLSELLQQAAAELDGEQA---------L 729

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
             +     L         ++  L  +E+   + ++          +    I          
Sbjct: 730  IRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFIC--------- 780

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD-L 672
              + V             G  +  L   + LI    +E +          L+R   +  L
Sbjct: 781  SSKPVDGSRLPLQFHDADGKSQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWL 840

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             +   ++     +     A G                   + WL+ L           + 
Sbjct: 841  GVADLKRGNANTSMLHRSALG----YLLGGGAALAESAELNVWLRDLAQGCDAIALQPVP 896

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND--PYAVYARRI 790
            +                K    KR        A        +      D  P +  A+++
Sbjct: 897  EPTDERFSAPSNEAALVKLLVPKRRAAENWWIASYSALRIGDTVTAGADESPDSPQAQKL 956

Query: 791  LKLDFIPHFKKD------------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
               + +                  P   + GT  H ++     +           L   +
Sbjct: 957  FDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEGAGNEGFAMTAHAPEKLQDAV 1016

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-----------VNIPA 887
                  +          W +         L    ++      +            V +  
Sbjct: 1017 ARRCNRRG------WAGWINTLSDWLQHMLNMPLRLSPDAAPVALGELDQPNQYRVEMEF 1070

Query: 888  KMAIESIGIH---------------------------LTGFADRIDLLKSGFVDITDYKT 920
              A  ++ +                              GF D     + G   + DYK+
Sbjct: 1071 WFASNNVNVAQMDALVRRLTHDNAPRAGTETISLNGMFKGFIDLTFEHE-GRYYVADYKS 1129

Query: 921  GDNPKKETAQKL-----------IDPQLSLEAAALKAGSFSQID----CRKVANLFYIRL 965
                  ++A               D Q  L   AL     +++      + +    Y+ L
Sbjct: 1130 NWLGSDDSAYTQLAMETAILDNRYDLQYVLYLLALHRQLKARMADYDYDQHMGGALYLFL 1189

Query: 966  KQKF 969
            +   
Sbjct: 1190 RGSR 1193


>gi|322691158|ref|YP_004220728.1| hypothetical protein BLLJ_0969 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456014|dbj|BAJ66636.1| hypothetical protein BLLJ_0969 [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 522

 Score = 46.5 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908
            P     W          F+  +   +  +E   +    +  ++ I   L G  D     
Sbjct: 70  SPATQDDWVGAAAAKLSGFVLTDALGRV-LEPAALEQDLEADVDGIP--LRGAVD--YRD 124

Query: 909 KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956
             G   + D+KTG  PK   A++    QL L    L+A    ++   +
Sbjct: 125 VDGT--VVDWKTGGTPKYRDARRRHADQLRLYRLMLEANGVCEVRAAR 170


>gi|124514961|gb|EAY56472.1| putative exodeoxyribonuclease V, beta subunit [Leptospirillum
            rubarum]
          Length = 1101

 Score = 46.5 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 55/576 (9%), Positives = 131/576 (22%), Gaps = 74/576 (12%)

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            L       + ++       +     +  S         +   +    +   +P     L 
Sbjct: 518  LVPKNDDGERVAGFFRERGIPYNSASPGSVFHTREADEIATVLDALLSPWRMPVLCLALG 577

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                      +D +++        +                         + +       
Sbjct: 578  TGLFGWDARRIDGLVRDPEQARPVQEVFLEASRLWRTHGIRAAFRELFFRMGVWTRLLSA 637

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                +   + +  +     +  +    +       ++   +        E  + + IL  
Sbjct: 638  GRTRQRIDRLVDRIEKAAGQFPTPPDQHRFFSRARLSPEGESHEETVGGEPGTGVHILTV 697

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             +S+ L F  + +             K        + +    +           +     
Sbjct: 698  HKSKGLEFPVVFVP-------FGIPEKTRKEEEAFREEDGEDS--DQSESLRLLYVALTR 748

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
             R  +Y          +     L+    L G       +KR     +   +         
Sbjct: 749  ARERVYLFCPLNRKKQSALDHLLETDRHLEGRREKTVTEKRFFAMREALEEAFSGVDGVS 808

Query: 754  YKRPK-------------------------PFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
            +  P+                            PL    R  SF+ I     D  A    
Sbjct: 809  FFEPRESSGERNHKTPKEQGKVEDEIVVRSLAHPLPVPRRVTSFTAIVARGEDSDAWNGT 868

Query: 789  RILKLDFIPH-------FKKDPDRTDRGTLFHNIITE----LIKKRINKNTPEINHLMKQ 837
              L  D            +        G   H ++ E    +++ +  K        +++
Sbjct: 869  DPLIGDEDGEDLSGNLVERPGAAGRAFGVFVHGVLEEAGKWIVRYKKAKKISPSRADVRE 928

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI-------EKIFVNIPAKMA 890
             + S F   + P      W     +++   L       S +       ++     P  + 
Sbjct: 929  WLRSSFP--SRPSDEVGGWTASALELAEQGLCTPLIPISGLPLADLLDDRSRFEEPFLLR 986

Query: 891  IESIG--------IHLTGFADRIDLLKSGFVDITDYKTG---------DNPKKETA--QK 931
            +             HL G  D + +     V + DYKT               E      
Sbjct: 987  LPDEENAGEREVASHLRGVID-VVVWSGKTVYLIDYKTNFLTAEGNPYAPESLERVLSDH 1045

Query: 932  LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967
              D Q  + + A +       +  +     ++ L+ 
Sbjct: 1046 RYDLQARIYSGACRRHLALTGNEGEFGGFLFLFLRG 1081


>gi|270283976|ref|ZP_05965334.2| putative DNA helicase II [Bifidobacterium gallicum DSM 20093]
 gi|270277840|gb|EFA23694.1| putative DNA helicase II [Bifidobacterium gallicum DSM 20093]
          Length = 510

 Score = 46.5 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 51/505 (10%), Positives = 126/505 (24%), Gaps = 57/505 (11%)

Query: 20  EMIPALLNGTLVENFRYD-PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78
            +  A    T+     Y           V     + +A QE+R+    +    S      
Sbjct: 41  AVAGAGKTRTITRRIAYGCASGAWDSQRVLAVTFSVKAAQEMRNRLSALNVPNSV---TA 97

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
            +       +         +   P                    + D   D+   +   L
Sbjct: 98  ATFHSAALHQLRDVWPEISDTPLPW-------------------VADNTADIVASALKRL 138

Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIASKYWTE 197
                    + + L   I+  +      +D   + +  +        A       + +  
Sbjct: 139 TNDSEPDPMVVRELEAEINWCKVGLIAPDDYARVASALHRQLRGPFDAKRFAELYELYEV 198

Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTK-----GPIIIAGSTGSIPATARLMSTVANH 252
                         +       ++           G + +       P   RLM+     
Sbjct: 199 EKTNRGQIDFNDILLIACHVMEDYPQAARMIRHDVGWLTVDEYQDVSPLQHRLMTLWLGD 258

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
            N  + +   D       +   +                  Y L +  +       D++ 
Sbjct: 259 NNRNVCV-VGDPAQTIYSFAGAS-----------------SYYLQQFANEFGPLDADIEL 300

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
             +  +               P             ++  +++  + V+    + + +EA 
Sbjct: 301 ATDYRSNPPIIRCANGVLKRAP-------DPKQYLRLHAVREGSARVSKTAYETDDDEAQ 353

Query: 373 SIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFG-INIDISAGIPLSTTLHSSI 429
            IA  +R  +D   +    A++T       ++   L + G   +  S G    T+L    
Sbjct: 354 RIASLIRRQVDRGSSPNDFAILTRINAQQPKLMKALHQQGLGTVVHSDGGWQYTSLSQRD 413

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           L  +          +    +    +      E          E +   G  N+ + ++ +
Sbjct: 414 LEHMHEEQRAKLQQVTQGAVTISTIHAAKGLEYPHVFLIGCSEGLLPYGQNNTSEAIEEE 473

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSE 514
             +L    T+  ++    +  R  +
Sbjct: 474 RRLLYVGVTRAEDSLHLSYARRKDD 498


>gi|86742493|ref|YP_482893.1| hypothetical protein Francci3_3814 [Frankia sp. CcI3]
 gi|86569355|gb|ABD13164.1| hypothetical protein Francci3_3814 [Frankia sp. CcI3]
          Length = 284

 Score = 46.5 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
            +  P+    + +++    ++          WR    +++H ++ H      + E   V 
Sbjct: 72  EQRVPQRAAALLRLLW--VDEGFRDGEQSYRWRERGARMAHDYVAHL---DPAAEPRGVE 126

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931
                  E++    +G  DR+D  + G + + DYKTG  P  +   +
Sbjct: 127 RSVAARTEALAF--SGRVDRLD-DRDGELVVVDYKTGRRPVTDDDAR 170


>gi|323575292|emb|CAJ88187.2| putative type I modular polyketide synthase [Streptomyces ambofaciens
            ATCC 23877]
          Length = 5447

 Score = 46.5 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 83/911 (9%), Positives = 184/911 (20%), Gaps = 65/911 (7%)

Query: 10   TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG 69
            + AP       ++ A L    V+        P   + VT++         LR+    +  
Sbjct: 1103 SAAPGFGLHPALLDAALQSAAVQGDGAGTGLPFSWSGVTLWASG---ATLLRARVSPVDD 1159

Query: 70   KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129
                 +  +   G  V          +  L         L  L    +      P     
Sbjct: 1160 GDGVRVRAVDPAGSPVVTVERVVTRPAPALTDEARQPDDLYRLEWTPVPAAGAGPGEFAQ 1219

Query: 130  LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
                 PL       + +  +      +            L A  +               
Sbjct: 1220 FGGGEPLVDRAGTLDHLADSGRTPTHL-----------VLSACTDAHPATGAQAVLARTT 1268

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
                     L +   +            +A+           +AG      A   L+ + 
Sbjct: 1269 EVLGRLRSWLGDQRYADSSLIVATRGAVQADPADTVPD----VAG-----AAVWGLVRSA 1319

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
             +   G IVL  LD               +    +     T     L      L      
Sbjct: 1320 QSEHPGRIVLVDLDPSAEDDARALARCVRSGEPQTAVRGDTVLAARLTAADRGLVPPPGG 1379

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN-ER 368
              R+G           ++       +    +    +     N +   + + +   +    
Sbjct: 1380 AWRVGVTERGAVENVALLPAPDAEGELRPGQVRVAVRAAGVNFRDVLNVLGMYPGEVLVG 1439

Query: 369  EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
             EA  + + +   +        ++         V +   R    +    G   +  +  +
Sbjct: 1440 GEAAGVVLEVGPGVTRCAVGDRVMGFFDGAMGPVAVTDERLLAQLPHGWGFAQAAAVPIA 1499

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
             +T+    +         + LV       G     ++R   A         K +   +D 
Sbjct: 1500 FVTAYYGLVDLAGLSAGESVLVHAAAGGVGMAAVQVARHLGAEVYGTASPAKWAATGLDA 1559

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
            + L   R    +           +      LA   VD   + + P   +     +     
Sbjct: 1560 EHLASSRDVGFEGVFRERTGGRGVDVVLNALAGEFVDASARLLVPGGRFVEMGKADVREA 1619

Query: 549  SISDWTKLTVTCLQNVC--LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                        L+              L     G   +          +      +   
Sbjct: 1620 DAFAGCAYRAFDLREAGPERIGEILAEVLALFATGTLAAPPVRAFDVRRAPDAFRFVSQA 1679

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
              + +++         E +  +         L     ++  GL   +           + 
Sbjct: 1680 RHVGKVVLSVPAAWDAEGTVLVTGGTGALGALTARHLVVEHGLRHLLLVGRRGAEADGAA 1739

Query: 667  VMQSDLNLKTAE---------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
             + ++L    AE               A   E+           +    +   + S    
Sbjct: 1740 ALSAELTALGAEVTVAACDVTDPEALEALLAEVPAQHPLTAVVHAAGILDDGLVESLTED 1799

Query: 718  RLLVLGGT------------------------------DFFDNLKKRGQCYLDWTRKLDY 747
            RL  +                                             YLD   +  +
Sbjct: 1800 RLEAVLAPKTAATALHEATAGADLAAFVMYSSMSGTFGSPGQGNYAAANAYLDALARHRH 1859

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                P                          I+            L  +      PD   
Sbjct: 1860 ARGLPALSLAWGPWAGIGGMADALTESEAARISRSGFPPLGPERGLGLLETALALPDPAL 1919

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
               +                   +    +++ D       L   +  +      + +   
Sbjct: 1920 LPAVLDTARLAASPATPPPLLHGLVRPARRVADRTVAPGGLAERLRRLPAEDRARTALDL 1979

Query: 868  LEHEEKIQSSI 878
            +          
Sbjct: 1980 VRGLVASVLGF 1990


>gi|239916611|ref|YP_002956169.1| hypothetical protein Mlut_00430 [Micrococcus luteus NCTC 2665]
 gi|239837818|gb|ACS29615.1| hypothetical protein Mlut_00430 [Micrococcus luteus NCTC 2665]
          Length = 936

 Score = 46.5 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 62/620 (10%), Positives = 143/620 (23%), Gaps = 40/620 (6%)

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
            E +            H  Y L   L  + I R+  + L    +    R +   K     
Sbjct: 74  AEGTITGWWFAEDDREHFDYWLRHALPHVVILRDQDRNLSFWVHVTPARVVSTGKGAKIL 133

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA--LI 392
             +           + ++      +  +        A + A+ L    +         LI
Sbjct: 134 VPASQTVDADHNEALSDVA-----LTQLPTPTWDGTAWTGAVHLAPVDEVRHALITPRLI 188

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI---------FKLNDF 443
               NL       L    + +     +       S    +  N            +  D 
Sbjct: 189 APHPNLVPDSISGLEALAMQVLFRDDLERILEPMSLPALAGENDAERKGLSLDDAREADD 248

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK------NSYDIMDLKSLVLDRIA 497
                     L  +      L +  +     + R           +D  D  + +     
Sbjct: 249 WCWRATAALHLWHYQGEPADLLQLVDLASTPSERSAASVLRCVYHFDENDPDTALQVLQD 308

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              ++ +     + L  +     + +  H       + T + ++ +     + +      
Sbjct: 309 ALAHDDYSSVDHAWLEAQRARALLEVGRHEEAFDLAMKTQRIHREAPSDVTAAAIAGACA 368

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
           +T  +     +      +   +   +            + +      W +  +  I G  
Sbjct: 369 LTSFRASGWMQGDIANIIQRSDNPASWWRTQVMSYGLSAHLSEEFRRWSEDASIRIGGSD 428

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT- 676
              K   S+ L      +          L              +    R+    L+  + 
Sbjct: 429 TAHKRLLSAALLASCAGDHDGWRGAIGALAEHFLVTTGPTDDPDRVAGRLTLLRLSGDSK 488

Query: 677 ----AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
               A ++I +             +  +RS R   +  I          L          
Sbjct: 489 STGRATRHIVRTGPTMAARIAASSVDLSRSTRTTALADI---------ELLTAAGDVLEP 539

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
            R      W   +     Q + +R +P   +  +      + +  L  D         L 
Sbjct: 540 ARADETCAWALAMLQ-EPQAYLERARPTFIVLYKIIDLLKAMVWTLSEDALHNVIDYFLD 598

Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                    D        L H I     ++   +     +      +   F +   P   
Sbjct: 599 QPP---VTDDGTAQTLARLIHTIPASAWRESDRQRAANRSDGDAAYLREAFLRVAAPAVA 655

Query: 853 DIIWRHLFHKISHSFLEHEE 872
           +   + L    +   +  E 
Sbjct: 656 ESREQVLQRARAGELIVFEA 675


>gi|289705920|ref|ZP_06502298.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
 gi|289557366|gb|EFD50679.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
          Length = 962

 Score = 46.5 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 63/738 (8%), Positives = 164/738 (22%), Gaps = 72/738 (9%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            +     T +A  E+R     + G  +  +  I +           +             
Sbjct: 112 EILAITFTNKAAAEMRERVAGLIGPTAQRM-WISTFHSSAVRLLRNEAANI--------G 162

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
           ++    +       R       +        +            K L + I  ++ E  +
Sbjct: 163 LKSTFTIYDSADSLRLVTTVAKQHELDPKRFAP-----------KALLNRISSLKNELVE 211

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
            +D  A    +   W    A       + +T RL + NA          +          
Sbjct: 212 ADDYAA-TVAEGDPWGRAVAA----VYRGYTARLRQANALDFDDLIGMTVHMFEAFPRVL 266

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPN--------GAIVLPGLDCHIPTAIWN 272
              +     +++     +  A  RL+  +A            G  +    D       + 
Sbjct: 267 DNYRRRFRHVLVDEYQDTNHAQYRLIRLLAGPAGDPEGVETPGGELTVVGDSDQSIYAFR 326

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
               ++      + T           +   L+      + + + +N +  R+       L
Sbjct: 327 GADIRNIVEFEQDFTD---------AVTIKLEQNYRSTQTILDAANAVIERNPDRRPKRL 377

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALI 392
                +         +  + +  +    +                L+          A+ 
Sbjct: 378 WTAEGEGPAIVGYAAENESAEAEWIASTI--------------DRLQDEDGIRPADVAVF 423

Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                 +R ++  L   GI   +  G             + L  I   +D + +  ++  
Sbjct: 424 YRTNAQSRALEERLVTRGIPYRVIGGTRFYDRKEIKDALAYLRVIVNPDDDVNVRRILNE 483

Query: 453 P-LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
           P        E  ++              +++ +   + +  L  +             + 
Sbjct: 484 PKRGIGDRAEGAVAAWAERNRSTFSAALRDAENAPGMAARSLKAVRGFVQMMDDLGQVAE 543

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN--VCLDEH 569
            +     L  +L    +           +++       +    +   T   +  +     
Sbjct: 544 SAGPATVLEAVLEQSGMLAALRESEDLQDESRADNLGELVAVVRSFETTHPDGTLSDFLE 603

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT-------RLIDGETVKPKI 622
           +       ++           + E    +    +     +            G   +P  
Sbjct: 604 QVALVADADQLPTAPDVEGEALAEQQGQVTLMTLHTAKGLEFRRVPDGHGARGVPARPLD 663

Query: 623 EKSSTLFILGTLESRLLNF-DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
           +         +   R  +      +     G      A       V + D          
Sbjct: 664 DGREGARGGASPGLRGPDARPPSPVPDARRGTLAVGPAPVQPAQPVPRGDPGGAHRLGAG 723

Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
           G  A    +    R  +  R         +A    +R                G      
Sbjct: 724 GHHALGRLVEPDRRRHLALRGAVRGRAAGLAVPGRRRRAAPAPHPRGRAGGPHGALRRGA 783

Query: 742 TRKLDYTTKQPHYKRPKP 759
               +        +  +P
Sbjct: 784 GEGAEPGAAAEGDRGAQP 801


>gi|215425866|ref|ZP_03423785.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis T92]
 gi|289749131|ref|ZP_06508509.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis T92]
 gi|289689718|gb|EFD57147.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis T92]
          Length = 799

 Score = 46.5 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 70/624 (11%), Positives = 147/624 (23%), Gaps = 85/624 (13%)

Query: 14  SSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI-EITGKKS 72
             PF    +  L+   L E           L  + +    + A +ELR     +I     
Sbjct: 26  GKPFA---LAGLVTRYLAETDA-------TLDEMLLITFNRAASRELRERVRGQIVEAVG 75

Query: 73  TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
            +       G++VE                    Q+   L   +  +         +   
Sbjct: 76  ALQGDAPPSGELVEHLLRGSDAERA---------QKRSRLRDALANFDAATIATTHEFCG 126

Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW------------ 180
               SL ++  NA      L + +  + TE      L     ++                
Sbjct: 127 SVLKSLGVAGDNAAD--VELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALALA 184

Query: 181 -------------------WLLAADFLKIASKYWTE---RLVELNASSPVGYQIALMRAE 218
                                +   F     +       RL     +  +      + A 
Sbjct: 185 VVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAA 244

Query: 219 ---AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
              A   M+     +++     + P   R++    +  +  I++   D       +    
Sbjct: 245 DSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILI--GDPKQAIYGFRGGD 302

Query: 276 ---EKSTNITSSNTTYSTHPQYSLAKLLDFLD-IKREDVKRLGNVSNEMYGRSMVISKSF 331
                    T+           S   L++ L  + R+      ++            +  
Sbjct: 303 IHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHRLA 362

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--- 388
             P  +  R   +  + +         +  +      + A  +A  L        +    
Sbjct: 363 SAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPVVA 422

Query: 389 --SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              A+I      AR  +  L   GI    +    +  +  +     LL A         +
Sbjct: 423 ADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSGLV 482

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                     FG   + L+   +AL        +   D    + +     A Q       
Sbjct: 483 RAAACT--MFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAAQLAGMGRR 540

Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
               R  E D      +   + +                G   + DW +           
Sbjct: 541 VLSQRGGERDLTDLAHIAQLLHEA---------AHRERLGLPGLRDWLRRQAKA----GA 587

Query: 567 DEHRKLPNLWFEEEGKTLSSLFSK 590
                   L  +     + ++F  
Sbjct: 588 GPPEHNRRLDSDAAAVQIMTVFVA 611


>gi|294666057|ref|ZP_06731317.1| glutamate-ammonia-ligase adenylyltransferase [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292604158|gb|EFF47549.1| glutamate-ammonia-ligase adenylyltransferase [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 941

 Score = 46.5 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 80/738 (10%), Positives = 180/738 (24%), Gaps = 42/738 (5%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           ARL       L +   D +             A  +A + A +    + E + WE    L
Sbjct: 200 ARLGQQLARLLDETTVDGFSHRVDLRLRPFGTAGRVALSFAGMDQYFQREGRDWERYAWL 259

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------ 226
           K             +L+    +   R ++  A   +    A + AE     +        
Sbjct: 260 KARAVAGDIDAGEAWLETLRPFVYRRYLDFTALDGLREMKAAITAEVARHDRLDDIKRGP 319

Query: 227 ----------KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                     +   +I G         RL+  +        +       + TA       
Sbjct: 320 GGIREIEFLAQSLQLIRGGREPSLRERRLLPALQALVAAGQIDQENGQALSTAYRFLRRL 379

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +      PQ  L +    L +   D   L +       R        L P  
Sbjct: 380 ENRLQMLRDAQTHALPQAPLDRERIALGLGYADWSALLDALAPQRTRVAAEFAELLAPRV 439

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                  + +      +   + +A I   +          AL      +  ++   +A  
Sbjct: 440 RATAPDALADYWRALPEGDAAPLAGIGLHDP----DGAHQALADFAQSSGVRALSDSARA 495

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L R +   L          A            +  LL A  +   ++A+       LA+
Sbjct: 496 RLDRVMPALLHAATRASQPDA--------AVRRMLGLLQATLRRTSYLALLDEQPSALAR 547

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                   +     L             + +L    +      +   H     +   ++ 
Sbjct: 548 LVDVLSRSALLAERL-------AAYPLLLDELLDTRISGPLPDRAALHAACAGTLHIDDT 600

Query: 517 KELAVLLVDHI--LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           +     L +    L     L T    + +      ++   +  V  + ++   +      
Sbjct: 601 EAALRELNERRLALSFRIALATLDGRQQAVESTRQLAWLAEAVVQTVLHLARSDMLAAHG 660

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                    +       +E G     + +   D    +   +  +P         +   +
Sbjct: 661 HVPGGSFAIVGYGSLGGLELGFGSDLDLVFLYDHPPEVDASDGKRPLDAGRWFARLAQKV 720

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
            + L            +     +  K   +S +       +         A         
Sbjct: 721 MALLAAETGAGRLYDIDVRLRPDGGKGALVSSLASYREYQRDRAWTWEHQA-----LVRA 775

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
             +    +L +          ++        +    ++ R +  LD +       KQ   
Sbjct: 776 LAVAGDAALCDAFAHVRRDTLMRVRDTAQLHEDVRKMRARMRAELDRSDAGRLDLKQGAG 835

Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                   L+A     +  + + L           + +  ++P     P      TL   
Sbjct: 836 GLVDLEFMLQAGVLGLAAQQPQLLDACDTPALIDALARTHWLPDESGAPLHQAHATLVDA 895

Query: 815 IITELIKKRINKNTPEIN 832
            ++  + +R     P   
Sbjct: 896 GLSCTLDRRPRLLAPTPA 913


>gi|288917908|ref|ZP_06412268.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288350697|gb|EFC84914.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 1157

 Score = 46.5 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 56/489 (11%), Positives = 102/489 (20%), Gaps = 48/489 (9%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
           P +   R ++ A+           +               T+RA  ELR     + G  +
Sbjct: 539 PGTGKTRTLVHAIAYRVRELAVPAE--------QCLAVTFTRRAAGELRERLDLLLGTDT 590

Query: 73  TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
                  + G  V       L L+          +R   LAR          D ++D   
Sbjct: 591 AGSVAGSTAGSAVTATTFHGLGLAI-------IRERHEALAR--AAEVRVADDAVRDELV 641

Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
           +  L    SP     +   LAD+               AL    Y               
Sbjct: 642 DEALHGAESPQARRRVVAELADLKRR-----------RALGRS-YRDHPSAG------VL 683

Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-----GPIIIAGSTGSIPATARLMS 247
             +   L + N           +           +       + +            L+ 
Sbjct: 684 ARYDAALRDRNMVDLDDLVTLPLGLLRSSPELAREYQRRWRHVWVDEFQDIDEVQYGLLR 743

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +   P    +    D       +                    P      L        
Sbjct: 744 EL--CPPDGDLCAIGDPDQAIYSFRGAEVGFFLRFE-----QDRPGARRVSLTRNYRSTP 796

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
             V    +             ++    DT          ++          +        
Sbjct: 797 TIVGAALDAIAPSTFVPDRELRAVTGQDTDGPVVIRPCGSEAEEAIAVVDLIEEALGGTS 856

Query: 368 REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH- 426
                S A+        +    A++      A  V   L R G         PL+     
Sbjct: 857 FHSLDSGAVDGSERGKLSFADIAVLYRTARQAEPVVDALLRRGFPFRQHGHTPLAELPAV 916

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
            ++L  L     +    ++ +                 +         A  G   S    
Sbjct: 917 GALLADLRERAGEPPRSVSTSLRDAAARLTDLAAGSDTALGAVLRSEAADGGGGRSPGAA 976

Query: 487 DLKSLVLDR 495
           +L+  V   
Sbjct: 977 ELRRAVELL 985


>gi|325830815|ref|ZP_08164199.1| UvrD/REP helicase [Eggerthella sp. HGA1]
 gi|325487222|gb|EGC89665.1| UvrD/REP helicase [Eggerthella sp. HGA1]
          Length = 1231

 Score = 46.5 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 72/734 (9%), Positives = 159/734 (21%), Gaps = 57/734 (7%)

Query: 236  TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
              +I      +    + P   +VL G              E    + +  + +++ P+  
Sbjct: 497  AEAIARRFAALREDGHAPGDMVVLLGKMSRAGMYAEALRAEGFECVVTGGSLFASAPEVR 556

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
            +            +   L  V      R        L  +               ++ + 
Sbjct: 557  VVARFVEALANPANTAALFEVLTSDMMRLSADDLLVLTTEEDPETGCVRRR----DLDRG 612

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
            F+ +A          A ++ +  R   +   +  A +  D  +       L   G     
Sbjct: 613  FARLASRADGLPPRLAHAVRLFERARDESRTRPVATVVRDAVVRSGWMARLEEEGAAGTA 672

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
             A   L        L +      +     + A  +   LA                 +  
Sbjct: 673  RAANVLKAVRLVDRLET-----ERHLGLASTARALADELAVGLKEAPGALSGAGGDVVKI 727

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            +  + +      + +L     A   +   +      ++      A  L            
Sbjct: 728  MTIHASKGLEFPVVALADFADARAGSGKLLVETCGAIARASLAPAASLEAFPQLAKRSGA 787

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                +       L+     +          L         +  +  +  +    ++ E  
Sbjct: 788  AAAGDGEDDADLLAARRLVE--GEDGPACALGASSCTQAAYRAQLARRAAD--EELAEAR 843

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              +        + +   +D +   P   K      L       L  D     G+ E  + 
Sbjct: 844  RKLYVGLTRASEALVVAMDAKA--PSAGKPPAYAPLVDDIRSALCGDGDFPEGVAELPYG 901

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
                       V   +  ++   +   +    F         +   + R        +R 
Sbjct: 902  GTAPARFERILVQPPEPRVEEGAEPAPEPRLFFVP-------VVDDASRSTLFAGGLARD 954

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
                  +    +      R +  L    +            P+ F        + S    
Sbjct: 955  GDFPEGVAELPYGGTAPARFERILVQPPEPRAEEGVEPAPEPRLFFVPVVDDASRSTLFA 1014

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTD------RGTLFHNIITELIKKRINKNTP 829
                 D    Y+         P  +  P   D       G+ FH      ++     +  
Sbjct: 1015 GGSARDDAFSYSSIAPNPVPAPAGEGAPFAADADKATDLGSAFHRAAQLAVETGRVPDAA 1074

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE-KIQSSIEKIFVNIPAK 888
                             +    +    R         +                  +P  
Sbjct: 1075 ------------RLGVLSEAYALSTGQRARLADACERWFSSATYAETLQWGLRRAEVPFF 1122

Query: 889  MAIESIGIHLTGFADRI----DLLKSGFVDITDYKTGDNPKKETAQKLID------PQLS 938
            + I    +   G  D +      L      + DYKTG        +           Q  
Sbjct: 1123 VPISDAFVE--GEIDLLCTDDAQLAGARALVVDYKTG----GSDGEAPEALCSKHLLQAQ 1176

Query: 939  LEAAALKAGSFSQI 952
              A AL      ++
Sbjct: 1177 CYAYALLRQGCVEV 1190


>gi|311739795|ref|ZP_07713629.1| excision endonuclease subunit UvrD [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304868|gb|EFQ80937.1| excision endonuclease subunit UvrD [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 685

 Score = 46.5 bits (108), Expect = 0.029,   Method: Composition-based stats.
 Identities = 46/434 (10%), Positives = 111/434 (25%), Gaps = 54/434 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA  E+R       G         ++       +            P   
Sbjct: 54  QRVLAVTFTARAAGEMRDRL-RTMGVAGV---QAQTFHAAARRQLKYFWPQVAGDLP--- 106

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    +L+      +   ++ +  ++   +       I  AK+     +  E    
Sbjct: 107 --------WQLLDNKFPLVARAVRSVGLDNSKDMIRDVLAEIEWAKSALVSAEDYE---- 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
               +             +A  F +      T  ++ L+    + +    +         
Sbjct: 155 --SVIANTDRSAPADPAKVAEAFRRYEQSKATPEMMHLDFDDLLMHIAGAIENVPAIAET 212

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +      ++       P   R+++      +   V+   D +     +N  +       
Sbjct: 213 FREQYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVV--GDANQTIYSFNGASPDYLLNF 270

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
           S      T         +  L        ++ +++      + VI K+      + +   
Sbjct: 271 SRTYPDGT---------VVKLQRDYRSTPQVTDLA------NRVIGKATGRAAGTRLELQ 315

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLAR 400
            + E       K +         +E  EA  +A  +   LD+     + A++      + 
Sbjct: 316 GMREPGPEPTFKAYE--------SEEIEAQEVAGQVLTLLDQGVPASEIAILYRINAQSE 367

Query: 401 RVKLELTRFGINIDISAGIPLSTTL----HSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
           + +  L   G+   +  G              +L +        +D +AIA      L  
Sbjct: 368 QFEQALADAGVVYQVRGGEGFFRRPEILEAIRVLIAATRREDLPDDPVAIARAAFVELGL 427

Query: 457 FGFPEKYLSRAKNA 470
                +     +  
Sbjct: 428 SSTEPQGAQARERW 441


>gi|311103867|ref|YP_003976720.1| GNAT family acetyltransferase [Achromobacter xylosoxidans A8]
 gi|310758556|gb|ADP14005.1| acetyltransferase, GNAT family protein 1 [Achromobacter
           xylosoxidans A8]
          Length = 805

 Score = 46.1 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 66/632 (10%), Positives = 159/632 (25%), Gaps = 39/632 (6%)

Query: 72  STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
             +LP   +L  +      + +LL + L  P    +  L L R             +   
Sbjct: 64  PAVLPE--TLRRLSPLAPRSVILLPHELPDPYP--RGTLALCRAWAEENRCELLGPRSFG 119

Query: 132 PESPLS--------LPISPANAIWLAKN---LADIIDIIETEEKKWEDLHALKNEKYGMW 180
            + P +        +         LA++   +A ++D  E     +    +L +E     
Sbjct: 120 AQRPHAGLNLSQHPVLARAGRVALLAQSRSIMAAVMDWAEDVHIGFSTAVSLGDEAVVG- 178

Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII--AGSTGS 238
                  L     Y        +    +          +      +  P+I+  AG   +
Sbjct: 179 -------LSKVLDYLASDPRTDSIVLYLEDVGPAREFMSTLRAAASVKPVIVLKAGRADT 231

Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
             A   +            V   +       +            +  +  S  PQ ++  
Sbjct: 232 DSA-DAIFDAALRRAGAVRVRYFVQLFSAVKVLGYTRRPKGRRVALISNGSGPPQLAMDL 290

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
           +     + R ++      +          + + +   T                      
Sbjct: 291 IGPDAAVLRAELAPATQRALVAMLEPDAATANPVITFTPLTPERIRAMLDAVLDDAGVDG 350

Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
           V ++ A +   +  ++A  L     + KK            R ++  L          AG
Sbjct: 351 VLVLLAPDALADMPAVARELAQIAPKAKKPVVTCFMGDAGMRPLRRMLD--------DAG 402

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
                T  S+        +   +    +    + P      P+   +R   A      R 
Sbjct: 403 TSAFRTPESAA--DAFGVLATHHYNQQLLLQTQPPEPATHVPDLTAAREILARVRAECRR 460

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
             N+ +I  L +L    +     +      +SR               I           
Sbjct: 461 ELNTSEIRSLLALFYVPLRDTPMDVAAAEPESRPMAIRVRRDPQFGPVIRFGAGGPDAVL 520

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
           +  +       ++ +    +     +              E  +    L S+++     I
Sbjct: 521 SQSDRGVDLPPLNGFLARQLIERSRLWRRVLAPRIGHMAAEALQQAVVLVSELVSELPDI 580

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
           ++  I+ +      +    ++  + +        T ++       +           +  
Sbjct: 581 ESLDIDPLYAGETHLRAGGLRMTLTEKPG---CATPQTAGYPHMAIHPYPARLVQVRRFA 637

Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
              P++ R ++ +      E   G +     M
Sbjct: 638 DGIPWVLRPIRPEDADPLQEFIRGLSERSRYM 669


>gi|51892441|ref|YP_075132.1| putative DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856130|dbj|BAD40288.1| putative DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 693

 Score = 46.1 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 56/463 (12%), Positives = 122/463 (26%), Gaps = 50/463 (10%)

Query: 56  AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115
           A+     + +E    ++  L  +++   V E+  +    +                +ARL
Sbjct: 276 ALARFSEQLLESLLGENRNLVTVRTSDGVAEDIVSRLEPVRV----VTDRQDLEARIARL 331

Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
           +   ++ LP+ ++ L P+  L       +   L       +D      +    + AL   
Sbjct: 332 MDRHQDHLPESVRRLRPDYVLDEIEWIIDGRNL-----KSLDEYLAASRTGRGI-ALGEA 385

Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
                W             +   L      SP   ++  +              ++I  +
Sbjct: 386 ARRAVW--------ELYTAFCTELERDGLCSPSRLRVRALEHVRAGRGGQRYDAVVIDEA 437

Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
               PA   L+  +A    G  V       I    +   + +             H +  
Sbjct: 438 QDLTPAMLSLLVELAESERGIYVTADPSQSI---YFRGFSWQLV-----------HQRLR 483

Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
                  L       + +  V+                 + S   + + L+   P     
Sbjct: 484 FRGRAKLLRRNYRSTREIAEVARAF-------------LEKSGAGDPESLQTDSPVTGPA 530

Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
                      + E+A      +   +  N   +A++    ++ ++ +  LTR G+    
Sbjct: 531 PVLATYESEAEQWEQAADFIRQMTRYVRMNHGAAAVLVPSSSVGQQAEEGLTRAGLKARF 590

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL-----VKHPLAKFGFPEKYLSRAKNA 470
             G  L     +  + +L  A       + IA L      + P            +    
Sbjct: 591 MRGSQLDLKTDAVKVLTLQAAKGLEFPVVVIAGLSARYFPRLPADMDPEERDEEMQTARR 650

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
              V +        I+  +      IA  +        Q    
Sbjct: 651 TLYVGMTRAMRCLVILHPRRAPSPLIAELEGPHWTLAGQQAEG 693


>gi|330830680|ref|YP_004393632.1| chromosome segregation protein SMC [Aeromonas veronii B565]
 gi|328805816|gb|AEB51015.1| Chromosome segregation protein SMC [Aeromonas veronii B565]
          Length = 1124

 Score = 46.1 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 64/598 (10%), Positives = 148/598 (24%), Gaps = 39/598 (6%)

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            + +E+       + +L P +  +   LEL R       +      D + +         +
Sbjct: 422  LEDERAGPLGTEADDLQPALDALSGELELTRAANGELTEQLAQAVDTHEQLKQQHGQQLS 481

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL- 202
                L   LA + D I  E+ +   L      +    W  A D  K+  ++ T    +  
Sbjct: 482  LQRELEARLATL-DQILGEQMEGATLA--DRLQVAPEWAQALD--KVLGRWLTATPADEC 536

Query: 203  ---------NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
                       + P        +   EH+       I +  S  +  A    ++   +  
Sbjct: 537  NLAQEGLWIGPAQPAVAGTLAAQLGGEHIPAF-LNAIWLVESREAALARQPSLAAGESVL 595

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
              A    G +           T           T        LA+L + L        +L
Sbjct: 596  TPAGDWLGPNWADLGQGVALGTMALLGERERLHTEQDKVAAGLAQLSEQLVSADARRAQL 655

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE---------A 364
             +               +     +        + ++  + +   +++ ++          
Sbjct: 656  ASAQELSQRTLREQELKWQQLREAWSLQQGQRQERLQRLGQLGEELSRLDQEQAEEAARL 715

Query: 365  DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
             + RE+       L    ++ +  +  +   + L  R +  +    +  +          
Sbjct: 716  ASAREQLELDEARLAELQEQGEPLTQGLQVAQELLTRCERAVDEARVRREQQQAACQRLQ 775

Query: 425  LHSSILTSLLNAIFKLNDFMAI-ATLVKHPLAKFGFPEKYLSRAKNALE----LVALRGN 479
            L    L  L+    +    + +    +K P ++       L   +  LE        R  
Sbjct: 776  LELGNLRQLITLGEEELARLGLELAGLKGPDSEAVPDLAPLLAEQRNLEAQQLACHQRLA 835

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
            +    + +L+                        E +      L +   +    LV    
Sbjct: 836  ELERQLGELEQARSADHKQLVTLQEKLATLRLERERNLTRRQGLHEQFEELGVRLVDLDQ 895

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG---- 595
                      +    +     ++ +       L      +   T      + +E      
Sbjct: 896  AVLIAADRSKLRQEIQTLEGQVEALGAINLAALEEYEEAKNRATYLENQCQDLEQALETL 955

Query: 596  -----SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
                    K   I + D   ++ +                L      LL     I+  
Sbjct: 956  SQAIKRIDKETQIRFRDTFDKVNEDLKSLFPKVFGGGSAWLELTSDDLLEAGVSIMAR 1013


>gi|118616501|ref|YP_904833.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium ulcerans
            Agy99]
 gi|118568611|gb|ABL03362.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium ulcerans
            Agy99]
          Length = 1110

 Score = 46.1 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 65/778 (8%), Positives = 179/778 (23%), Gaps = 100/778 (12%)

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
             + A   M+     +++     +     +++ +  +      ++   D       +    
Sbjct: 253  DSAARARMQQRWPVVMVDEFQDTDAVQWQVIDSAFS--GRCTLILIGDPKQAIYAFRGGD 310

Query: 276  EKSTNITSSNTTYSTHPQYSLA---KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
              +    +           +      L+D L +     +           ++        
Sbjct: 311  IVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDVKAHHQGHRLA 370

Query: 333  PPDTSDMRNTDILE-NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---- 387
                +D     ++    +         + ++     R+ A  I   L        +    
Sbjct: 371  GAPHNDALRLRVVRRATLGRRGIQNLPIDILRDHIGRDLASDIGALLASGATFAGRALQA 430

Query: 388  -KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
               A+I      AR     LT  GI+   +    + ++  +    +LL A  + +    +
Sbjct: 431  NDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSEAADDWLALLEAFDQPHRPGIV 490

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                          +                            +L      T +      
Sbjct: 491  RAAAATMFFGKTANDLAR----------------------GGDALTDRVAETLREWADYA 528

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV-- 564
              +   +  +      + D +L             + T     +S   + T+  L++   
Sbjct: 529  RERGVAAIFEAAQLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLR 588

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
               E R              +++    +     ++   +       R I    +    ++
Sbjct: 589  GQREDRGGATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDR 648

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIG 682
                  L        +F T+   G  E     +      ++R             ++  G
Sbjct: 649  G--TRCLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNG 706

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
              +           ++  R+         A    Q+    GG    +++           
Sbjct: 707  GLSRLLRGRRPGDSVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVIAAAPAIAGQP 766

Query: 743  R----KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL------K 792
                       +    +  +       +    +    +  + +     A   L       
Sbjct: 767  APSELATRRFDRDIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSG 826

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIIT-------ELIKKRINK------------NTPEINH 833
             +        P     G+L H ++        +L  +  ++               ++  
Sbjct: 827  PEQPSPMADLPSGAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWPVQVPAAQLAA 886

Query: 834  LMKQIIDSHFEKENLPPHIDIIWRH-LFHKI-------------------------SHSF 867
             +  + D+          +  I       ++                           + 
Sbjct: 887  ALVPMHDTPLGPLAGGLTLRQIGLPDRLREMDFEFPLAGGDEADAGGHAPDLRLADVGAL 946

Query: 868  LEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSG---FVDITDYKT 920
            L         +      +    A+    +   L+G  D +  +  G      + DYKT
Sbjct: 947  LRAHLDASDPLAPYDDRLSGD-ALGGQTLRGYLSGSVDVVLRIPDGPGQRYLVVDYKT 1003


>gi|94263170|ref|ZP_01286988.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
 gi|93456541|gb|EAT06655.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
          Length = 1239

 Score = 46.1 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 90/934 (9%), Positives = 203/934 (21%), Gaps = 148/934 (15%)

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-------AEHLMKGTKGPIIIAG 234
             L A       +   +RL      S       L  A           L+       +I  
Sbjct: 331  QLLAGLGATVRRELPKRLYAAGRQSFDDLLHRLAEALGDPGRKALAGLIAARYPVALIDE 390

Query: 235  STGSIPATARLMSTVA----NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
               + P    +   V            ++   D       +      +    + +     
Sbjct: 391  FQDTDPIQYAIFQAVYQQASRAEAATRLILIGDPKQAIYAFRGADIFAYLGAARDAGEQC 450

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
            +           ++      + L    N ++                     +  +    
Sbjct: 451  Y----------TMNTNWRADRSLVAAVNAIFAAQPNPFVVPEIAFYPVKPQPEAGDGWHG 500

Query: 351  NIQKCFSDVALIE-ADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELT 407
                  + +  +  A  + EE ++ A + +         +  AL+ AD     R    LT
Sbjct: 501  GEVGGTAPLQFLTLAPAKVEELLTGARSKKQLARSTLENQIPALVAADLVKLLRGGATLT 560

Query: 408  RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
                  D +   PL     + ++     A     D +  A  +K   +        L+  
Sbjct: 561  TG----DAADRRPLQPADIAILVRENRQA-----DEIQAALRLKGVKSVVHSRASVLNSR 611

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
            +     + L G          ++ ++  +        V   +     +           I
Sbjct: 612  QAEQLAILLYGLLEQAGEGQRRAAMVSELLACTPAELVTLAEDEKRWQQWLNDFSRWREI 671

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
             +    + T +           +               L E           +   L   
Sbjct: 672  WRERGLISTMRIIDQEKGFTRRLLPMADGERRLTNYRHLFELLHHREKEEHLQATALLKW 731

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
            F +     +   A A E      +         + +      +      +    +     
Sbjct: 732  FDEARAGRADATAEAQELRLESDQEAVRILTIHRAKGLEFPVVYCPYLWKTWQKERRKPE 791

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
             +     PK   +          +  L+  E++  +    +      +H         + 
Sbjct: 792  EVLIYHDPKADYQGKIALLPTAEERRLRAQEQFAEELRLLYVALTRAKHCCLVVWEAASG 851

Query: 708  IPTIASRWL----QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
                A   L    Q+ +     +   +L    +    W  +              P  P 
Sbjct: 852  YQDTALAHLLHGGQQPITNDRAELLADLTGACKRQPHWQWRPLPADPATVAPWRDPSRPE 911

Query: 764  --------------EAQPRTYSFSEIKQLINDPYAVYARRIL------------------ 791
                              R  SFS++     +    +++                     
Sbjct: 912  GSAGGYCRTLRHGIAPAWRVGSFSQLIAARGEQAPDFSQSRDYDAPGQPASAPLADTPAA 971

Query: 792  ------------KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                        +L         P   + G L H I   +       +  E +   + I 
Sbjct: 972  QGGEDHGEAVKQRLPARVPLADFPAGLNAGNLLHRIFELI-------SFHEASEHRRIIA 1024

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV-------NIPAKMAIE 892
            +                     +   + L+       S     +        +     + 
Sbjct: 1025 EQAATFGLTGAMEPEKVVAELSQAVAAVLQTPLLSDESFSLADIDDQHRLNEMSFTFPLC 1084

Query: 893  SIGIHLT------------------------------------GFADRIDLLKSGFVDIT 916
              G  LT                                    GF D +   + G   I 
Sbjct: 1085 QRGSPLTAAALAAAFAEEAVGLPPAYPAHLAELPFTALQGFMKGFIDLVFQHR-GKWYIV 1143

Query: 917  DYKTG---------DNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDC----RKVANLF 961
            DYK+             +      +     Q  L   AL     +++           + 
Sbjct: 1144 DYKSNLLGDSHADYQPGRLWPPMVEHHYILQYHLYTVALHRHLSARLPAYDYRHHFGGVL 1203

Query: 962  YIRLKQ-KFKIDCITNDKKKYSADELSEKSLKNL 994
            Y+ ++    ++       ++  A  L +   + L
Sbjct: 1204 YLFIRGMHPELGTAAGIFQQRPAAGLIDHLSRRL 1237


>gi|162451803|ref|YP_001614170.1| ATP-dependent DNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161162385|emb|CAN93690.1| ATP-dependent DNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 1089

 Score = 46.1 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 41/398 (10%), Positives = 89/398 (22%), Gaps = 54/398 (13%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
                  T+RA  ELR     + G+    +P + +   +           +         
Sbjct: 530 QCLAITFTRRAADELRERLGALLGEAGGRVPAM-TFHALGLSLLREHAQGAGA------- 581

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII---ETE 162
                                 ++       +L +    A  L  ++A +          
Sbjct: 582 --------------APPAIAGERERTALLAAALGVPERRAARLLADIAALKRRCPRHADA 627

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH- 221
                    +       W            K + + L               +    E  
Sbjct: 628 HGSPAAGGEIDRHVDRAW------------KVYEDELAARGLLDLDDLIGHAVLLLEEQS 675

Query: 222 ----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +     + I           RL+  +     G  V    D       +      
Sbjct: 676 GALAAARERARYLSIDEYQDIDERQYRLVRAL--VAPGGNVCAIGDPDQAIYGFRGADVG 733

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                  +   +      L +         E   ++   S  +  R ++ S   +     
Sbjct: 734 FFFRFQQDFPAAR--VVRLKRNYRSSRPIVEAALQVIAPSPTLGARELLPSAGGVELVAV 791

Query: 338 DMRNTDILENK--IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395
               T+  E +  +  I++          D+ R            S D +    A++   
Sbjct: 792 HESPTEAAEAERVVHTIERMLGGSTFFSMDSGRV------SDPAGSGDYSFSDFAVLYRT 845

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
              + R++    R G+     +   L+    S  L   
Sbjct: 846 EAQSERLREAFARSGMPFQRRSDRRLAERAGSEALARA 883


>gi|167523216|ref|XP_001745945.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775746|gb|EDQ89369.1| predicted protein [Monosiga brevicollis MX1]
          Length = 654

 Score = 46.1 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/279 (7%), Positives = 69/279 (24%), Gaps = 30/279 (10%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST----------ILPI 77
             +     +   + +  + V +   T++A +E+R    ++  +                 
Sbjct: 48  RVITRRAAWLIEHGVAPSEVVLMTFTRKAAREMRERLDQLLAQSGAASGAAAAGQHRAGQ 107

Query: 78  IK--SLGDVVEEKFT--ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE 133
           I   +   +        + LL        +    R   L   I   +   P+  +     
Sbjct: 108 IMAGTFHSLALRFLRRYSHLLNLSQNFTQIDTESRNRILRDFIKECKKAAPEGEESEKSL 167

Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK---I 190
            P  +  + +            +  +   E + E     ++ +         + L     
Sbjct: 168 KPSVVGNNISRIK---------MMRLTPSEAQQELRRLEQHSELSPENSDLYNLLSSTLP 218

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIPATARLMSTV 249
             +++                +      ++          I++     + P    ++  +
Sbjct: 219 CYEHYAAVCEREGLIDYDDMLLKCEELFSKAPHVVKPYSHILVDEFQDTNPVQYDMVRHL 278

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
           A+  N   +    D +     W            ++   
Sbjct: 279 AHSGN---LFVVGDPNQSIYGWRAAQADGYRRIFADFPG 314


>gi|171318888|ref|ZP_02908022.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria MEX-5]
 gi|171095918|gb|EDT40856.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria MEX-5]
          Length = 1234

 Score = 46.1 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 87/902 (9%), Positives = 191/902 (21%), Gaps = 90/902 (9%)

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIA 233
             W  L AD+L  A     ER       S       L RA   H      ++      +I 
Sbjct: 338  RWLALIADWLDTAPGELAERKRTRRVVSFDDLLANLYRALHAHPWLAETLRARYPAALID 397

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
                + P    + + +     G  +    D       +      +     ++ +      
Sbjct: 398  EFQDTDPLQFAIFNRI--FAPGGPLFLVGDPKQAIYSFRAADLHTYLAARASASACYTLA 455

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
             +       +D                      +        +                 
Sbjct: 456  VNQRSTPAIVDACNRFFMSNPRAFVLDGLDYYAVRAGTRVRASFVDATDPGPAGDFRIWA 515

Query: 354  KCFSDVALI----EADNEREEAISIAIALRMSLDENKK---------KSALITADRNLAR 400
                D  L+    +A   +  A  IA  +R + +   +           A++        
Sbjct: 516  LPGGDDTLLKRDAQAQAAQACAAEIARLMRGAREGQARLGDTPLSPGDIAVLVQTHRQGS 575

Query: 401  RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
             VK  L  +GI     A   + +T  +  L  +L AI    D   +   +          
Sbjct: 576  LVKRVLATWGIGSVELAQASVFSTDDAEQLERVLAAIDAPGDLRRLRAALAADWFGLDAG 635

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN-------THVPHWQSRLS 513
              +     +         + ++   ++  S        +            +   +  ++
Sbjct: 636  ALWRMEQGDGDASREAADSADAMSWVERFSRYRLLWRERGFAVMWRTFTRELRIAERLMA 695

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
              D E  V  ++H+ +      + +     T   L+              +  D +    
Sbjct: 696  GADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGGGEEAQLRLESDRNLVQI 755

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT----RLIDGETVKPKIEKSSTLF 629
                + +G   + +F   +  G   +  A    D                   E +    
Sbjct: 756  VTVHKSKGLEYAVVFCPFLNDGGLREPPASGLPDAREYHDDAGDAVLHYGCDDEAAEHAA 815

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                 E        + +            A     SR  +            G       
Sbjct: 816  RQALREQAAERARLVYVALTRAVYRCYLVAGPYLSSRSTREARRSVLNWLVAGAGQSFDA 875

Query: 690  MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT- 748
              +         +  +       S     +          +   +       TR L    
Sbjct: 876  WLDEPPDEAVLDAAWQALAGGPVSVAPLPVPARPERLAAGHDATQTLTARHATRVLRDAW 935

Query: 749  -------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                         +       +           +  +  D   V A  +           
Sbjct: 936  RMASFSSLTASMAREEAGVAVVPDDEFRPDHDALAAVAPDGAFVAADTVATEPPDDDILL 995

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861
             P     G   H +         +         +              P +      +  
Sbjct: 996  FPRGAAAGECLHRLFELSRFTEPDSWHQAALGALHD------RPVEAEPELATRLPAMMA 1049

Query: 862  KISHSFLEHEE---KIQSSIEKIFVNIPAKMAIESIGIHL-------------------- 898
            ++    +  E       + ++ +           +  + L                    
Sbjct: 1050 RLVDDVVRTELVPGMRLADLDPVRRLDEMGFLFPAPSLELGALRRLLVAHGYLDVALDSG 1109

Query: 899  ------TGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEA 941
                   GF D I     G   I D+K+                   A      Q  L  
Sbjct: 1110 MLAGFIKGFIDMIVEH-DGRFWIVDWKSNHLGNTPDAYGPRALDVAMADHAYHLQALLYT 1168

Query: 942  AALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997
             AL      ++        +A   Y+ ++          +     A   + + +  L  +
Sbjct: 1169 VALHRYLRGRLPDYDYDTHMAGYLYLFVRGVRPDWRSGGEPAGVHARRPARELVDALDRM 1228

Query: 998  VT 999
            + 
Sbjct: 1229 ME 1230


>gi|258654033|ref|YP_003203189.1| exodeoxyribonuclease V subunit beta [Nakamurella multipartita DSM
            44233]
 gi|258557258|gb|ACV80200.1| exodeoxyribonuclease V, beta subunit [Nakamurella multipartita DSM
            44233]
          Length = 1139

 Score = 46.1 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 98/995 (9%), Positives = 213/995 (21%), Gaps = 122/995 (12%)

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174
            L  +    + D+    +    L        A+ LA+ + D            + L A  +
Sbjct: 163  LDDLIVQVVDDLYIAAFARRDLPPVFDRDTALALARRVVD----------DPQALLAPPD 212

Query: 175  EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG------ 228
                        F +   +   ER  +            L  A A       +       
Sbjct: 213  PDPISPANWRIKFGQRVRREVEERKRQRRILGYDDLLGRLATALAPADAPARERMRRRWS 272

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
             +++     + P   +++    +     +++   D       +      +    +     
Sbjct: 273  FVLVDEFQDTDPVQWQILDRAFSGHATMVLI--GDPKQSIYAFRGGDVPTYLAAAHTAGP 330

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
            +        +    L    + +     + +       V+S    P          +    
Sbjct: 331  ARATLDRNWRTDPPLVTALQVLLHELTLGSPEIVVRPVVSALPGPRLHGAPSAAPLRLRV 390

Query: 349  IPNIQKCFSDVALIEADNEREE-AISIAIALRMSL---------DENKKKSALITADRNL 398
            +   Q       LI  D  RE  A  +A  L   L                A+I      
Sbjct: 391  LRRDQVNCGAGELIPIDRARELIARDLAADLAELLGAGATFDHKPLQAGHVAVIVGTHKQ 450

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            AR V+  L R GI   ++    +  T  +    +LL A+ + +    +          + 
Sbjct: 451  ARTVQTALIRVGIPAVVAGSSSVFQTEAADQWVTLLEALEQPHRAARVRAAALTAFVGWS 510

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR------IATQKNNTHVPHWQSRL 512
              +      +   EL  L             + +L+       +  +             
Sbjct: 511  AADLAARGEEATDELSVLISGWAGVLATRGVAALLEVVGVETGLPARVLGRVGGERLLTD 570

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV------CL 566
                 +L           +  L  +   + +       +D  +   T             
Sbjct: 571  LRHVGQLLQTAAVQDSLGVAALAEWLRRRRADDRLDVTADRVRRLETDAAACQVVTLHAS 630

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
               +           +  +     ++      +   I   D   R    +    +    +
Sbjct: 631  KGLQYPVVYLPFAFDRWYNDEPDVLLLHQDGHRVLDIGGPDTPGRGRRRDQALAEEAGEA 690

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
               +   L        T      N      +               ++K       +   
Sbjct: 691  LRHLYVGLTRAQSQVVTWWAPTKNTRTSGLHRVLFGDRDFDGGVPDSVKVPSDEAARTRL 750

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
            D     G    +    +  +     A+   +   +       D   +R +     +    
Sbjct: 751  DGWQQRGA---LVLEQVGVSAARPPAADAPRPDELAVAVLHRDLELQRWRRVSYSSLSAA 807

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR- 805
             ++         P              E+        A         D +   +      
Sbjct: 808  GSSGLLIGADAGPVAGDLGVGSEPEHPELADEDGALAAPAGAPDPVADPMAALRATLSPM 867

Query: 806  ------TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
                     GTL H +      +  +          +Q+          P  +      +
Sbjct: 868  ADLPVGATFGTLVHAVFETTDPRAADLPAQVRARCAEQVAR--VGFPLDPDTLAAALVPV 925

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH---------------------- 897
                                     +  ++ +                            
Sbjct: 926  LRTSLGPLAGGLTLADLGTRDRLTELEFELPLAGGDRAAGPVPDLVLGDLAPVIRRHLPA 985

Query: 898  ------------------------LTGFADRIDLLKSGFVDITDYKT--------GDNPK 925
                                    LTG  D +  L      + DYKT        G    
Sbjct: 986  ADPLAGYADRLAAPSFAELPLRGYLTGSLDAVLRLPGPRYLVADYKTNWLGDFDSGAPLS 1045

Query: 926  KETAQ----------KLIDPQLSLEAAALKAGSFSQ----IDCRKVANLFYIRLKQKFKI 971
                +               Q  L   AL      +       R +A + Y+ ++     
Sbjct: 1046 LWDYRPAAMDAAMAGSDYPLQAMLYTVALHRFLRWRQPGYHPGRHIAGVLYLFVRGMAGP 1105

Query: 972  DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
            D    D +       +      LI  V+ L +G  
Sbjct: 1106 DTPEIDGRPCGVFGWAPPVE--LITAVSDLLDGTA 1138


>gi|224823760|ref|ZP_03696869.1| exodeoxyribonuclease V, beta subunit [Lutiella nitroferrum 2002]
 gi|224604215|gb|EEG10389.1| exodeoxyribonuclease V, beta subunit [Lutiella nitroferrum 2002]
          Length = 607

 Score = 46.1 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 57/560 (10%), Positives = 126/560 (22%), Gaps = 53/560 (9%)

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
           +     ++F   +   +  L++             + A     L A R      D    +
Sbjct: 9   VALTQESVFASAEAQDLLALLRAWAEPASEGRLRSALASELFGLDAARLLARVDDEPAWE 68

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
           + +       +         +      +E     +  +      L               
Sbjct: 69  AQLAANAEDHRRWREHGFMAAWRGFFGRERLAERLLPLPDGERRLTNLAHLAELLQRESE 128

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
                   +   +    D       L   E    L  + +     G         +  + 
Sbjct: 129 ERQGMAPLLAWFEGRVADPPGGEEALLRLESDAALVKIVTIHTSKGLQYPVVFCPF--LW 186

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
              +D +       +      L          D + L   +E +  K       L+R   
Sbjct: 187 DGKLDAKDPAFWRFRRDGASWLAPDSVAG---DDVRLLARSETLAEKLRLLYVALTRAQY 243

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
                    + +  AA  + + +G          +    P      L  LL     +   
Sbjct: 244 RQYLAWGWVQGMATAALSW-LLHGRDSHTLPELEQLALNPATLEADLATLLAAHAGEIGR 302

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                    L      +       + R    P   A   + + +            + R 
Sbjct: 303 LDASPLTLRLAPPEHAEAALAAQPFTRKLYTPWRVASFTSLTAAAHAAPAQAEAPDHDRG 362

Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
            L L      + D     RG      +  ++++    +    +  ++       E+    
Sbjct: 363 ALTLAEEDAARLDRFAFPRGARAGTCLHAMLERV---DFAADDDTLRAAAVEQLERAGFA 419

Query: 850 PHIDIIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIESIGIH----------- 897
            H       +  +     L+           +  V +   + +E + +            
Sbjct: 420 LHWQDAALDMLRRTLAVPLDDGVRLADVPAGRRLVELEFTLPVERLDVAALVGVLTDPAN 479

Query: 898 ---------------------LTGFADRIDLLKSGFVDITDYKTGDNPKKET-------- 928
                                L GF D +    +G   + DYK+                
Sbjct: 480 GLAAPLRDAAAALDFYRVVGYLKGFIDLVCE-ANGRWYLVDYKSNHLGHDAAYHREALLA 538

Query: 929 --AQKLIDPQLSLEAAALKA 946
             A++    Q  L   AL+ 
Sbjct: 539 SVAREHYYLQYLLYCVALRR 558


>gi|56479085|ref|YP_160674.1| chromosome segregation ATPase [Aromatoleum aromaticum EbN1]
 gi|56315128|emb|CAI09773.1| chromosome segregation ATPase [Aromatoleum aromaticum EbN1]
          Length = 1176

 Score = 46.1 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 79/775 (10%), Positives = 192/775 (24%), Gaps = 45/775 (5%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            S+  RL EL   +   R       + ++      + IS A    L   L  + D  +  +
Sbjct: 260  SDSARLQELENAVESGRAAHFSASEAMHAAQSDLVAIS-AEVSRLEAELRHLEDARKRID 318

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL--VELNASSPVGYQIALMRAEAEH 221
                 L  L  ++    W   ++ L    + W+  L    L A         +     E 
Sbjct: 319  ---ARLVQLATDE--AHWCARSEALGSDRERWSALLDNAVLRAEQAEARHAEVAERLPET 373

Query: 222  L------------------MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                                   +  +  A    ++ A   L          +  + G D
Sbjct: 374  ESARQAADATVAAARRELGQTEQQLRVGEANRANTMRALDALALRRTRLLGDSGAIEGPD 433

Query: 264  ---CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
                    A  +T+ E+                 + A L   LD +R+  +RL  +    
Sbjct: 434  EAALAQQEARLDTVREEHDARQQELAQTQARLPQAQAGLKAALDDERQVQRRLTELRARR 493

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK--CFSDVALIEADNEREEAISIAIAL 378
                 + +K        D      L    P  +     +          RE   ++  A+
Sbjct: 494  DALVQLQAKVQSQGQLGDWLKRHRLAELAPLWRALRVDAGWETAVEAMLRERLAALTGAI 553

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
              +      ++              ++L         +A I       +++  +L + + 
Sbjct: 554  DDATRAMFDETPPAAFAVAFPDGDDVKLPPVEPPSGATALIDRVHLPEAALRPALADWLH 613

Query: 439  KLNDFMAIATLV--KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                  A+   +  +  LA          +      LV    +  ++ +M+ +  +    
Sbjct: 614  GCFAVDALEPWLGRRAELAPGTCLVGPRGQILTRHALVHYAPDSRTHGVMERQREIDTLA 673

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC-GNLSISDWTK 555
              Q+              E + +A  L +        L + +   ++     L ++   +
Sbjct: 674  DRQRELEAEAQQAHDALLEAEAIAANLQERDNALRRELQSMQQQIHTEQVALLKLTQARQ 733

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                    +  D    +     E     L+   ++   +    +         +  L + 
Sbjct: 734  RADERRAQLTRDLDDLVHLEAGER--NQLARAETEQARSAELAELQRERLDAAMEVLAER 791

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFD-TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
            +++  +             E+R    +    L  +       +   +   + +      L
Sbjct: 792  DSLLRETRALEQATARELQEARFSERECAGKLDDIARNAELASEQLDRIAAELDARRREL 851

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
               +    + A    +           + R+    T     L++   L      +    R
Sbjct: 852  DATDCSHSREALQEALTLRQSRETALSARRDALEQTA--SLLKQTEELRLRTEQEATPAR 909

Query: 735  GQ----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
             +           +L            +          T    E   +            
Sbjct: 910  ARIAELRLGVQAAELAAAQFDERLAEAQADEAALQPLLTGDVRENGLVREVARLAREIAE 969

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
            L    +    +     +R         +L +  +     +    + +      + 
Sbjct: 970  LGQVNLAALDELRSAQERKGYLDAQNEDLSQAIVT--LEDAIRRIDRETREQLQD 1022


>gi|146096749|ref|XP_001467919.1| membrane associated protein-like protein [Leishmania infantum
           JPCM5]
 gi|134072285|emb|CAM70990.1| membrane associated protein-like protein [Leishmania infantum
           JPCM5]
          Length = 1183

 Score = 46.1 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 54/589 (9%), Positives = 122/589 (20%), Gaps = 4/589 (0%)

Query: 111 ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
           E ARL      +     +              A     A+  A +    E + +   +  
Sbjct: 333 EQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAE 392

Query: 171 ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
                                         E    +    + A +  EAE   +  +   
Sbjct: 393 EQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAE 452

Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
             A         ARL          A         +                 +      
Sbjct: 453 EQARLAREAEEQARLAREAEEQARLARE-AEEQARLAREAEEQARLAREAEEQARLAREA 511

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
             Q  LA+  +       + +    ++ E   ++ +  ++      +          +  
Sbjct: 512 EEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREA 571

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
             Q   +  A  +A   RE      +A          + A   A        +  L R  
Sbjct: 572 EEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREA 631

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
                 A         +           +  +   +A   +         E+    A+ A
Sbjct: 632 EEQARLAREAEEQARLAREAEEQARLAREAEEQAHLAREAEEQARLAREAEEQARLAREA 691

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
            E   L         +  ++    R+A +         ++         A        + 
Sbjct: 692 EEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREA 751

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ--NVCLDEHRKLPNLWFEEEGKTLSSLF 588
                  +  +          +  +L     +   +  +   +       EE   L+   
Sbjct: 752 EEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREA 811

Query: 589 SKIIETGSCIKANAIEWIDIITRL-IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
            +        +  A    +   +  +  E  +                            
Sbjct: 812 EEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREA 871

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
                +  +   +        +     + AE+    A    E A   R 
Sbjct: 872 EEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLARE 920



 Score = 42.6 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 46/506 (9%), Positives = 104/506 (20%), Gaps = 1/506 (0%)

Query: 111 ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
           E ARL      +     +              A     A+  A +    E + +   +  
Sbjct: 463 EQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAE 522

Query: 171 ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
                                         E    +    + A +  EAE   +  +   
Sbjct: 523 EQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAE 582

Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
             A         ARL          A         +                 +      
Sbjct: 583 EQARLAREAEEQARLAREAEEQARLARE-AEEQARLAREAEEQARLAREAEEQARLAREA 641

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
             Q  LA+  +       + +   +++ E   ++ +  ++      +          +  
Sbjct: 642 EEQARLAREAEEQARLAREAEEQAHLAREAEEQARLAREAEEQARLAREAEEQARLAREA 701

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
             Q   +  A  +A   RE      +A          + A   A        +  L R  
Sbjct: 702 EEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREA 761

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
                 A         +           +  +   +A   +         E+    A+ A
Sbjct: 762 EEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREA 821

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
            E   L         +  ++    R+A +         ++         A        + 
Sbjct: 822 EEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREA 881

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                  +  +          +  +L     +   L    +       E  +        
Sbjct: 882 EEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREAEEQARLAREG 941

Query: 591 IIETGSCIKANAIEWIDIITRLIDGE 616
           +        A   +       +    
Sbjct: 942 VGVVEGEESAARAKVSREAQEVSAAL 967


>gi|289662333|ref|ZP_06483914.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 899

 Score = 46.1 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 54/577 (9%), Positives = 137/577 (23%), Gaps = 90/577 (15%)

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
           L +       + +A  A+ + A+   K S    D    +L  +    +       ++ L+
Sbjct: 177 LVRSHGEATRIQQALGAVGIPAVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALA 236

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                   + +  + +       ++                      + ++     ++L 
Sbjct: 237 TVLIGEDAIAIAALERDGEHHRRWQQQALDWRERWQRGGPLA----LVGDLGATHGQRLL 292

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI------EKSST 627
            L   E   T     +++++            +D ++R I       +         +  
Sbjct: 293 ALIDGERRLTNYLQLAELLQEADARALGPHGLVDWLSRRIANADDNDEAQQLRLESDARR 352

Query: 628 LFILGTLESRLLNFDTLILG---------GLNEGVWPKNTAKNPFLSRVMQSDLNLKTA- 677
           + I+   +S+ L +  + L          G               L    + D    +A 
Sbjct: 353 VQIVTLHKSKGLEYPLVFLPYIGIGRGDKGAGRHCVVHAPEIGRQLHWKTERDDPSWSAA 412

Query: 678 ------EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR-----LLVLGGTD 726
                 E+    A   +       H ++  S   +     A   + R         G   
Sbjct: 413 EAAWKQEQRAEDARLLYVGLTRAEHALWIASGPFHQHERTALAGMLRALDALQGAAGEGA 472

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
              +              ++         +    P       T   +       DP A  
Sbjct: 473 VVIDTSTPPANLPRLPPPIEAQVPPARNPQRHIAPEWWVYSFTQLANADAGAATDPMASA 532

Query: 787 ---------------ARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL-------IKKRI 824
                          A  +   +    F         G + H++            +   
Sbjct: 533 TVVGSGGSDEPSGSEAVAVAVANEAEPFDPRFAGNRFGVVMHDVFERCDFAAWHAWRPGQ 592

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-------------HLFH---------- 861
                +   +++ +    + ++ L   + ++                             
Sbjct: 593 AAPDGQAAPILEALQRGGYAQDELDDGLRMLTALIGHTLTVALPEGTRLADVPEPQRRNE 652

Query: 862 -----KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916
                 +  + ++    +      +             G+ +TG  D +     G   + 
Sbjct: 653 MEFHFAMRPTRVDALLALLHRFGVVGDRQAFGARQRLEGL-MTGLID-LTYTVDGRWYVL 710

Query: 917 DYKTGDNPK-------KETAQKLIDPQLSLEAAALKA 946
           DYK+   P        +  A    + Q  +   AL  
Sbjct: 711 DYKSNRLPSYDADALARAMAHSEYELQALIYTVALHR 747


>gi|254432659|ref|ZP_05046362.1| exodeoxyribonuclease V, beta subunit [Cyanobium sp. PCC 7001]
 gi|197627112|gb|EDY39671.1| exodeoxyribonuclease V, beta subunit [Cyanobium sp. PCC 7001]
          Length = 1248

 Score = 45.7 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 82/771 (10%), Positives = 183/771 (23%), Gaps = 92/771 (11%)

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                 +++     + P   R++S   +      ++   D       +      +  +   
Sbjct: 400  ERYSAVLVDEFQDTDPIQWRILSRAFDARR-HRLVLVGDPKQAIYRFRGGELATYRLAYR 458

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                       +++L          +  L  +      RS +      PP +    +   
Sbjct: 459  QAAADG----GISRLDTNYRATPSLIAGLNALMAPGLPRSGLAVPPVQPPPSPSGWSAPG 514

Query: 345  LENKIPN------------IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALI 392
             E                   +     + +E +     A  +A  +R    E      L+
Sbjct: 515  GEGGDAPTLSLLWLGSDRPAGEAPPTTSAVEQELPDRVARLVAAEIR--TGEAPADLCLL 572

Query: 393  TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
             +    A ++++ L R GI   + +   +  +  ++ L  LL+ +    D   +  L   
Sbjct: 573  VSTHRQAGQLRVALARAGIASRLVSDGDVFASDGATALQRLLDGLAHPGDPRRLRLLAAS 632

Query: 453  PLAKFGFPEKY-------------LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
            PL  +                   L R ++ L  + L G   +    +  + +       
Sbjct: 633  PLLGWSAGAIAAAGAEQWSALSEKLLRGRDGLPRLGLLGVLAALLDDEGLARLGLEGRVL 692

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQC-ITPLVTYKTNKNSTCGNLSISDWTKLTV 558
             +              D+  A    + + Q  + P  +   +          + W     
Sbjct: 693  ADLNQCALLLQERIHTDQLGADAAAEWLRQRRLAPDPSPPESHQPNSDVEDEAVWVVTVH 752

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                                   + L   +     TG  +  +         + ++    
Sbjct: 753  RSKGLEYPVVICPYLWKAPHANPRGLGLRWQPSDRTGPVLDLHLGSRWGRGHQALEQHRA 812

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                E     ++  T   R L      + G                      D      +
Sbjct: 813  AELQEAERRAYVACTRAKRRLLLAWGPVKGQAGNPLHPWLLAAQAALADADDDPYATQGD 872

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG-TDFFDNLKKRGQC 737
              + QA      A     ++ T       +P          L LG       +       
Sbjct: 873  GELRQALELGLAARQVPMVLMTVPPAAGPLPGRPPATATEPLTLGPVPQRRLDHSWGRSS 932

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            Y  WTR       Q   +  +                   L  +P      +        
Sbjct: 933  YTSWTRGSHAAAPQALEEGRETD----------------ALAREPELAAVDQEPWPGE-S 975

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                 P  +  G   H I+  L        T +   + +++  S   +++L   +  + R
Sbjct: 976  PLADIPRGSRAGDCLHRILESL--DYQRPATQQSEAVRRELERSGIGRDHLEDVLSGVER 1033

Query: 858  HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES-------IGIH------------- 897
                 +     +          +I   +   + +                          
Sbjct: 1034 LRLSPMGGPLGDFRLAGLERGSRI-NEMNFDLTLGPVTSDSLARPFRDHPGGSFGAGYAD 1092

Query: 898  ------------LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936
                        LTG  D +   + G   + D+K          ++  D Q
Sbjct: 1093 QLAALSVQGRGFLTGSIDLVFCHQ-GRWWVADWK-----SNWLGERGADGQ 1137


>gi|330469972|ref|YP_004407715.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
 gi|328812943|gb|AEB47115.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
          Length = 712

 Score = 45.7 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 50/589 (8%), Positives = 131/589 (22%), Gaps = 55/589 (9%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T RA  ELR    ++           ++       +         +       
Sbjct: 60  HVLAVTFTARAAAELRHRLAQLGVAGV----QARTFHAAALRQVRYFAPRLLDG------ 109

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                            L   ++ +   +  +   +   A   A++LA  I+  ++   +
Sbjct: 110 -----------RAMPELLDSKVRLVTLAAARAGLRADRTA---ARDLAGEIEWAKSSLVE 155

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
             +      +            +      + +               A +    EH    
Sbjct: 156 PGEYVVAAAKALRETPHEPVK-VAEVFAAYEKLKRTTGVIDFEDVLRAAVWGIEEHADVA 214

Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
              +      ++       P   RL+       +   V+   D       +   T     
Sbjct: 215 EQVRNQYRHFVVDEYQDVNPLQQRLLDAWLGGRDDVTVV--GDASQTIYSFTGATSSYLV 272

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                     H   ++ +L+       + V               + +        ++  
Sbjct: 273 DFPRR-----HRGATVVRLVRDYRSTPQVVG--------------LANAVISQARGTEA- 312

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLAR 400
               LE           +V +   +     A++      +       + A++      + 
Sbjct: 313 -RLRLELVGQRPAGPAPEVRIFTDEAAEANAVAARCRALVDAGTPAHEIAVLFRTNAQSE 371

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK--LNDFMAIATLVKHPLAKFG 458
             +  L   G+   +                  + A  +    +    A +V+   A   
Sbjct: 372 AYEKALAESGVPYVVQGADRFFERPEVRQAMVAMRAATRSIPGETPLAAAVVEALAAVGW 431

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
            P+             AL       +       ++   A       V           + 
Sbjct: 432 TPDSPPPGGAARERWEALAALVQLAEEYAATPQLMPLGAAATVERPVTLADFTDELARRA 491

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                       +  L + K  +      + +++ T  T        ++E R+L  +   
Sbjct: 492 AQQHAPTVDGVTLASLHSAKGLEWDAVFLVGLAEGTLPTTYARTAEQVEEERRLLYVGIT 551

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
              + L   ++     G   +        +            +    + 
Sbjct: 552 RARQWLWLSYASARSPGGRARRPCRFLPQLSASGTTERAGGTRSAPGAQ 600


>gi|302851847|ref|XP_002957446.1| hypothetical protein VOLCADRAFT_98490 [Volvox carteri f. nagariensis]
 gi|300257250|gb|EFJ41501.1| hypothetical protein VOLCADRAFT_98490 [Volvox carteri f. nagariensis]
          Length = 4518

 Score = 45.7 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 86/855 (10%), Positives = 214/855 (25%), Gaps = 45/855 (5%)

Query: 54   KRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELA 113
             RAIQE  +   E     +     ++   ++           S   +  +  +++ L   
Sbjct: 1998 NRAIQEQITRLGEQLAGTAASAASLELPPELAATLAGLATSSSPLPSGSLRALEQQLVAM 2057

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID----------IIETEE 163
             L      +L    +         L +       L    A + +           ++  +
Sbjct: 2058 TLEKEAVERLLVQEQAEVRMLQQELGVMAQVTAALEDTQAQLQEARLAVAHQQQELQERD 2117

Query: 164  KKWEDLHALKN---EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220
            ++       +    E+        A  +   + Y+ ++  E  A+     Q  +M   A 
Sbjct: 2118 QQLAASRQREVQLMEELAAEQKRVASQVVAIASYFEQQFEETRAAIVAELQDQVMAMPAG 2177

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                         G   S  +  R             +   +   +P       ++ S  
Sbjct: 2178 RG-----------GFQLSSVSQPRYSLQAYTDSQPEYIRTDIKSPMPDLCSELPSQLSQG 2226

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
             T S +  +      L+             +  G++S  + G    +  S      +D  
Sbjct: 2227 DTLSVSQTAQALDEQLSSRTASGGRTDLGSQLAGSLSAHLLGTRRSVQHSDDAAAPTDNL 2286

Query: 341  NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLAR 400
              D     +P   +   ++    A      A  +A ALR  +    +         + + 
Sbjct: 2287 APDAAFATLPEALRL--ELEAQVASARASLASQVAEALREDILHQLETRHSAPVHTSSSG 2344

Query: 401  RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
              +L+      +    A +    T+   I+ +   A  +      +              
Sbjct: 2345 HSRLQDAFEAEHAAQLAVMRADHTMQMEIMRARHAAQVEELLAERVVQP-----GAIREE 2399

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                     A     L      +     + L       +            +  E     
Sbjct: 2400 YAAQLEHVRAEHAKQLEELHARHAAQVEELLAERAREPEALRAEHAAKVIAMRAEHSRQM 2459

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
              L    +  +  L+  ++ + +       +    L       +          +     
Sbjct: 2460 EALRAEHMDQLEELMVERSRQPAALRAEHAAKLAALRAEHTGQMEALRSEHAARMEVLLA 2519

Query: 581  GKT--LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
             +     ++ ++     + ++A   + ++I+      E      E+++    L    +  
Sbjct: 2520 ERATQPEAMRAEHASQLAALRAEHAKQMEILRSEHAKEVGVLLAERAALPEALRAEHAAQ 2579

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
            L             +   +  +   +     + L    AE+ I   A     A     L 
Sbjct: 2580 LEGIRSEHAARLGALRADHATQMETMRASHAAQLGALLAERVIQPDAF---KAEHAVELA 2636

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK-RGQCYLDWTRKLDYTTKQPHYKRP 757
              R+     +  + +   +++  L            R +            TKQ    R 
Sbjct: 2637 ALRADHAKQMEAMRAEHGKQMEELAEERAMQQRDTLRTEHAAQLASLHAEHTKQMEAMRA 2696

Query: 758  KPFPPLE---AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
            +    +E   A+ +T S     +      A+ A    +L              R      
Sbjct: 2697 ELTSQIETLLAERKTVSQVLRDEHAMQLEAIRAGHASQLTAQNAEHAKQLEMLRAEHAKQ 2756

Query: 815  IITELIKKRINK-----NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
            +   L++                  ++       E         +  +     ++ +  E
Sbjct: 2757 MQRLLLEHAAQPEVIRAGYSTQAAALRAEHAMQMEALRAEHAAVLADKERLRAVAAAAHE 2816

Query: 870  HEEKIQSSIEKIFVN 884
             + +   +  +  V 
Sbjct: 2817 QQLQELRTGHQKRVE 2831



 Score = 38.7 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 67/633 (10%), Positives = 146/633 (23%), Gaps = 26/633 (4%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
                 A  + IA  +W+ R +             L R  A          +  A +  S 
Sbjct: 3096 HHRRKARAISIAVSHWSVRQLSRCL----EAWRQLHRMHARAAAYSDPAAVRAAITHHSS 3151

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
             A   ++        GA         +P                     +   Q +  + 
Sbjct: 3152 LALRAVL--------GAWHQHVYQTQMPKTQRRRRAAHVYRRRLLRKAMACFAQQAERRA 3203

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            L    + R   +     S      S  +           + +   L+     +Q+     
Sbjct: 3204 LKCSQLARSTRR--HRFSVLNRAFSCWMRYLDSTRRKRSLLSMADLQYGHAVVQRWRRAA 3261

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI---DIS 416
            A   A      A+  +  +R       +  A I   R     ++L        +    +S
Sbjct: 3262 ARRRALRLGLAALQASGGIRRLRTFWGRWRAFILRRRQAVLALRLASEHHRGALMWRCVS 3321

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
            A + L+    +  L  +           A     +                +     V  
Sbjct: 3322 AWLHLAKQSAARQL-HIKGMREYQRMMQAALRWQRLVATGRRQQAVVDRAVRMYRHRVLA 3380

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
               +               +      + V  + S    +      L+             
Sbjct: 3381 ATQRAVLRHWRAAVDDRRGLLRSAAVSFVHAYLSIWRRKVLIAWHLVASRAAGERGIEEA 3440

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
             +  +       ++   +               +           +   S   K +    
Sbjct: 3441 LELRRALERNEGAMRQVSARLEAVGAESAELLEQLKEAQSEVLVLRQQLSESEKRLGEAM 3500

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
               A A   ++     +     K    ++    +L  + +      +  +   +      
Sbjct: 3501 EALATAERELEAQGAGLATRADKIASLEAERDMLLDRVNTLRQQVSSGEVSVASLQEQAS 3560

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
            +  +    ++    +LNL    K   QAAH  E     R    + + RE       +  L
Sbjct: 3561 SLQRTLAAAQGTVKELNL----KMQQQAAHYEEQLLAARDEA-SLARREAGSLAATASRL 3615

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
            ++                        ++L            +     +A   +   + + 
Sbjct: 3616 EQQATDSEAQLRAMRTGHEALVASLRQELRARDVHIMALNQQQQQHRDAAALSRPATSV- 3674

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                 P AV++ R L  D           + RG
Sbjct: 3675 --ARPPNAVFSPRPLGADPRSRSGGGGFASARG 3705


>gi|255323795|ref|ZP_05364921.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum
           SK141]
 gi|255298975|gb|EET78266.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum
           SK141]
          Length = 685

 Score = 45.7 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 46/434 (10%), Positives = 111/434 (25%), Gaps = 54/434 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA  E+R       G         ++       +            P   
Sbjct: 54  QRVLAVTFTARAAGEMRDRL-RTMGVAGV---QAQTFHAAARRQLKYFWPQVAGDLP--- 106

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                    +L+      +   ++ +  ++   +       I  AK+     +  E    
Sbjct: 107 --------WQLLDNKFPLVARAVRSVGLDNSKDMIRDVLAEIEWAKSALVSAEDYE---- 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
               +             +A  F +      T  ++ L+    + +    +         
Sbjct: 155 --SVIANTDRSAPADPAKVAEAFRRYEQSKATPDMMHLDFDDLLMHIAGAIENVPAIAET 212

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +      ++       P   R+++      +   V+   D +     +N  +       
Sbjct: 213 FREQYRTFVVDEYQDVTPLQQRVLNAWLGERDDLTVV--GDANQTIYSFNGASPDYLLNF 270

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
           S      T         +  L        ++ +++      + VI K+      + +   
Sbjct: 271 SRTYPDGT---------VVKLQRDYRSTPQVTDLA------NRVIGKATGRAAGTRLELQ 315

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLAR 400
            + E       K +         +E  EA  +A  +   LD+     + A++      + 
Sbjct: 316 GMREPGPEPTFKAYE--------SEEIEAQEVAGQVLTLLDQGVPASEIAILYRINAQSE 367

Query: 401 RVKLELTRFGINIDISAGIPLSTTL----HSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
           + +  L   G+   +  G              +L +        +D +AIA      L  
Sbjct: 368 QFEQALADAGVVYQVRGGEGFFRRPEILEAIRVLIAATRREDLPDDPVAIARAAFVELGL 427

Query: 457 FGFPEKYLSRAKNA 470
                +     +  
Sbjct: 428 SSTEPQGAQARERW 441


>gi|322491825|emb|CBZ27098.1| conserved hypothetical protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 3850

 Score = 45.7 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 76/762 (9%), Positives = 183/762 (24%), Gaps = 12/762 (1%)

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
                  ++ L  E+    P++ A ++     +  + D +  +E +  +L  L  E     
Sbjct: 1107 EAEMIALRQLLAEAQRGAPVAGARSLESGATVQALRDQMAEQEAEVAELRQLLAEAQRGA 1166

Query: 181  WLLAADFLK--IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238
             + AA FL+     +   +++ E  A      +  L  A+    + G +     A     
Sbjct: 1167 PVAAARFLESGATVQALRDQVAEQEAEMIA-LRQLLAEAQRGAPVAGARSLESGATVQAL 1225

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
                A   + VA                      +               +         
Sbjct: 1226 RDQMAEQEAEVAELRQLLAEAQRGAPVAGARSLESGATVQALRDQVAEQEAEMIALRQLL 1285

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
                 + +    ++  + +     R  +  +         +      E +    ++  S 
Sbjct: 1286 AEAQREAQAAGARQRDSGATVQALRDQMAEQEAEMIALRQLLAEAQREAQAAGGRQRDSG 1345

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
              +    ++  E  +  IALR  L E ++ + +  A    +      L       +  A 
Sbjct: 1346 ATVQALRDQMAEQEAEMIALRQLLAEAQRGAPVAAARSLESGATVQALRDQV--AEQEAE 1403

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
            +     L +        A  +  D  A    ++  +A+       L +     +  A   
Sbjct: 1404 MIALRQLLAEAQREAQAAGARQRDSGATVQALRDQMAEQEAEMIALRQLLAEAQREAQAA 1463

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT-Y 537
                 D       + D++A Q+            ++    +A          +  L    
Sbjct: 1464 GGRQRDSGATVQALRDQMAEQEAEMIALRQLLAEAQRGAPVAAARSLESGATVQALRDQV 1523

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
               +        +    +           D    +  L  +   +       + +   + 
Sbjct: 1524 GEQEAEMIALRQLLAEAQREAQAAGARQRDSGATVQALRDQMAEQEAEVAELRQLLAEAQ 1583

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
              A       + +            E+ + +  L  L +       +      E      
Sbjct: 1584 RGAPVAAARSLESGATVQALRDQVAEQEAEMIALRQLLAEAQRGAPVAGARSLESGATVQ 1643

Query: 658  TAKNPFL--SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
              ++        M +   L    +     A    + +G         + E     IA R 
Sbjct: 1644 ALRDQVAEQEAEMIALRQLLAEAQRGAPVAGARSLESGATVQALRDQVAEQEAEMIALRQ 1703

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDW----TRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            L      G         + G            +     +              A  R+  
Sbjct: 1704 LLAEAQRGAPVAGARSLESGATVQALRDQMAEQEAEVAELRQLLAEAQRGAPVAGARSLE 1763

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
                 Q + D  A     + +L  +    +            +  T    +         
Sbjct: 1764 SGATVQALRDQMAEQEAEVAELRQLLAEAQRGAPVAAARSLESGATVQALRDQVAEQEAE 1823

Query: 832  NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
               ++Q++        +     +        +     E E +
Sbjct: 1824 MIALRQLLAEAQRGAPVAGARSLESGATVQALRDQVAEQEAE 1865


>gi|296130687|ref|YP_003637937.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
 gi|296022502|gb|ADG75738.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
          Length = 643

 Score = 45.7 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 41/479 (8%), Positives = 108/479 (22%), Gaps = 51/479 (10%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106
           V     + RA  E+R     +           ++       +       +         I
Sbjct: 64  VLAVTHSSRAAGEMRDRLARLGVGGV----QARTFHAAALRQLRYFWRATGLPGDGPVLI 119

Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
                 A+     R  L  +++    +   S+    +  +  A             +   
Sbjct: 120 DADGPGAQ-YRYLRGALGAVLRTPARDVDASMVTDLSTELTWAAA----------RDLTP 168

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--- 223
            +  A          +     +  A + +T                   R   +      
Sbjct: 169 AEYEAQAEAAGRKPGMR-LSTVAGAMRRYTTAKRAAGVLDFADLLATCARLLEDDDEVAA 227

Query: 224 --KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +      ++     + PA  RL+       +   V+   D       +          
Sbjct: 228 TVRQQYAAFVVDEYQDTDPAQQRLLDAWLGDRDTLAVV--GDARQAVYAFKGADTSLLRD 285

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
            +                                V+ ++       ++     +      
Sbjct: 286 FTVRFP--------------------------HAVTVDLVQDYRSTTQVVDVANRLMAGR 319

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLA 399
            +     +  +      V +++ D+E +E   +   +R  L      ++ A++      A
Sbjct: 320 PESAGPALVGMLGDGPAVQVVQGDDEEDEDARVVATVRRWLAAGVPPEEIAVLHRFNAQA 379

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
             +   L   G+ +  + G         + + +LL            A ++   LA+ G 
Sbjct: 380 VALTAALRDAGVPVVAADGQAYFDRREVAHVRALLREHAARTPDEDAADVLGQVLARVGH 439

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                     A              +  L + +   +     +      +         
Sbjct: 440 DPDAPPDGTGAARERWDALEALRSLVATLPAALTGTVRALSADLDRRAAEDHAPPGRGA 498


>gi|332527050|ref|ZP_08403134.1| ATP-dependent exoDNAse beta subunit [Rubrivivax benzoatilyticus JA2]
 gi|332111484|gb|EGJ11467.1| ATP-dependent exoDNAse beta subunit [Rubrivivax benzoatilyticus JA2]
          Length = 1211

 Score = 45.7 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 72/832 (8%), Positives = 172/832 (20%), Gaps = 86/832 (10%)

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-------EHLMKGTKGPII 231
                L    L+ A +       E    +       L               +K      +
Sbjct: 339  ERLRLVRTLLESAPERLRALKRERRVLAFDDMLQNLHERLTGGACPQLAAALKTRFPAAL 398

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
            I     + P    +   V    + A +    D       +      +          S  
Sbjct: 399  IDEFQDTDPLQWAIFEAVYGAGD-APLFLIGDPKQAIYSFRNADLNTYLAARQRAAASWT 457

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
               +       L               +       +     P      R  +    ++ +
Sbjct: 458  LAQNQRSSEPLLGALNGLFGHQPRAFMQDGLDYQPVGYGAKPRAPFADRGAERAALELWS 517

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-------------KSALITADRNL 398
            + +      L ++      A + A  +   +D  ++               A++      
Sbjct: 518  LPRDDEGQPLAKSAAMAAAAAACAAEIARLVDAGRRGEATLAGRGLAAGDIAVLVRSHRQ 577

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
              R++  L   G+     +   +  +  +  L  LL A+ +  +   +   +      + 
Sbjct: 578  GARMRQALAALGVASVELSQASVFASRDAEDLERLLGAVLEPANAARLRAALATEAMGYD 637

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                       A     ++      +    + + +      ++        SR   E + 
Sbjct: 638  AARIAALADDEAALAELVQRFAAYRETWFTRGVAVMLRRWMQDEGVAARLLSRPDGERR- 696

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                        +T  +             +  +  +  +   +     +      L  +
Sbjct: 697  ------------MTNWLHLAECLQRAAETTTSPEALQRWLHDERRAPGGDDEAQLRLESD 744

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                 + ++          +    +          DGE  +        L++ G  E   
Sbjct: 745  RNLVQIVTIHKSKGLEYPVVFCPFVFDGHAGGGGSDGEGRELHDTAGQQLWVFGDAEVEP 804

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
             + D   +    E +     A    + R++         +     A              
Sbjct: 805  GSDDRAKVEQAAETLRLLYVALTRAVHRLVLVVGPYAVRKSATESARALLNWFVADGQQE 864

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
                L     P       Q    L                    +  D            
Sbjct: 865  PAAWLTGKREPEEVDAAWQAFAALHPQTVALRTLPDTPGTPLAVQAADPEAIVALPAPAV 924

Query: 759  PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
            P         + +     +          R   +         D  R  RG +    +  
Sbjct: 925  PPAWWIGSYSSLTQGLRHEGAAQDRDEAQRPARRAAPATLAADDVLRFPRGAVAGECLHA 984

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
            L +     +         + +  H  +                 +  + L      +   
Sbjct: 985  LFEHADFADAARWPEAAARALALHPPEAEADSG-------RLAPMLETLLADVLATRLPG 1037

Query: 879  EKIFVNIPAKMAIESIGIH---------------------------------LTGFADRI 905
              +  ++P    +  +                                    L GF D +
Sbjct: 1038 GVVLGDVPPGKRLAELEFTLPSPALAADALAAVLREAGLPVPALAFGMLRGYLRGFIDLV 1097

Query: 906  DLLKSGFVDITDYKT----------GDNPKKETAQKL-IDPQLSLEAAALKA 946
               + G   + D+K+          G  P            Q  L   AL  
Sbjct: 1098 FEHR-GRCHVLDWKSNHLGWTAADYGPEPVAREVAAHGYQLQALLYLVALHR 1148


>gi|297622270|ref|YP_003703704.1| hypothetical protein Trad_0018 [Truepera radiovictrix DSM 17093]
 gi|297163450|gb|ADI13161.1| conserved hypothetical protein [Truepera radiovictrix DSM 17093]
          Length = 779

 Score = 45.7 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 52/455 (11%), Positives = 103/455 (22%), Gaps = 18/455 (3%)

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
             +  R     + +L    +    T         + +  + VA+  A N   EA  +  A
Sbjct: 195 RALAQRCADPPEVWLSLPEAVPGLTPEELGGAERLPRRPNAVAVYAAPNPVAEARWVLRA 254

Query: 378 LRMSLDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           L+  L    +  +L         R    L   +G+ +       L+      +L +LL  
Sbjct: 255 LKRDLAAGAEPRSLAVVLPEREVRAFRALADEYGVPLADETPKSLAELPGGQLLVNLLEL 314

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                    +A        +     K    A+ A                 L++ +    
Sbjct: 315 PDYPTPARLLAL------PELEALAKAALAARVAGREALEALAHEQGLAGPLRAWLTRLE 368

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
           A              L E    +A   VD  ++      +                W   
Sbjct: 369 APTSELEWARDLLYSLPELGGGVAPRFVDAAMERAKEAASLAKGAQ-------FRAWWAA 421

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
            +   +                  G+    ++      G+     A ++           
Sbjct: 422 LLRETRLKPPAGGGVPLLSATLASGRRFRRVYLMRALEGAYGTGEAEDYFFPEELRRPLG 481

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
              P++ K             L   D +++            A+        Q    L  
Sbjct: 482 ERAPQLPKRFGGRDAALFAELLTRGDEVVVTFPEADQGGPRVAEPALTPCAAQPLPQLPA 541

Query: 677 AEKYIGQAAHDF----EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                    H F      A     +  T           A R+     V+     +    
Sbjct: 542 GSAVELGVRHTFTPCEARAERPLRVGRTDVQALVRFERCAFRFWAERFVVREDPPWWRAL 601

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                 L    ++     Q  +    P+     + 
Sbjct: 602 VAELRALGRLSEVRLKLLQTRFPAAAPWLAAHGER 636


>gi|288941061|ref|YP_003443301.1| chromosome segregation protein SMC [Allochromatium vinosum DSM 180]
 gi|288896433|gb|ADC62269.1| chromosome segregation protein SMC [Allochromatium vinosum DSM 180]
          Length = 1170

 Score = 45.7 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 58/650 (8%), Positives = 135/650 (20%), Gaps = 51/650 (7%)

Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
            +   + ++  ++     T   + Q    +    L++K    + L +    +  R     
Sbjct: 196 DVREEVGKQLLHLERQAATAEKYTQLRAEERRLDLELKALRWRALDDELQALSRRLAEAE 255

Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD--NEREEAISIAIALRMSLDENK 386
                      R    +E+K         D   I+        E      A++ + +E  
Sbjct: 256 NQGEAGLAEQRRLEAEIESKREAYNAASDDFNAIQGRYYAVGAEIARAEQAIQFANEERG 315

Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH------------SSILTSLL 434
           ++ A +             L R    +   A                      S++T   
Sbjct: 316 RREAELVRLDQELYEAGQHLERDRERLTEIARALAEDEPQLEQAESELSEATGSLMTLED 375

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL-VL 493
                 +++ A       P  +       L+  + A      R  +   +   L +  V 
Sbjct: 376 QLKSWESEWDAFNAEAARPSEQAQLERARLTALEQAQGRERERRRRIEEERARLDASDVS 435

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN-STCGNLSISD 552
            R+        V   +    E++++  +  +      +  L                   
Sbjct: 436 ARLEELSERESVLDERIEALEDERDAVLESLAGHETALRALADTLDQVRTRLREAKGRLA 495

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                          E R             L             ++    + +  +T  
Sbjct: 496 SLTALQESALADTDVERRDWLASRGLAGAARLVEQLKVEPGWERAVEIRLGQALRAVTVD 555

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                V    E    L +L T        +                     L        
Sbjct: 556 ALETAVADANELPPGLVLLETAGDPGSEPEPETGYWRLGQRAQSPWPIGGLLGPTHTVA- 614

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                             A   RH +   +           R   R+    G        
Sbjct: 615 --------------HLREALAARHDLSRDATLITPEGIEVGRHWLRVPERDGASGVLERA 660

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
           +           L     +   +  +                    + D      +R L 
Sbjct: 661 ETIAALESELAALADEEAERLDEELE--------------------LRDARTDSEQRRLA 700

Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
           L+      +      R  L         +    +   E    +++       +       
Sbjct: 701 LESELTGLERERSALRSELSALRTRVEHQSERRRALDEEWADLERQSAESLAEMEDTRER 760

Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902
              W      ++   +  E++      ++  +   +         L    
Sbjct: 761 LHDWLDQMETLAEQRVTLEQERTRLRTQVAESRERERTCRDRAQSLRIRV 810


>gi|82658728|gb|ABB88535.1| polyketide synthase type I [Streptomyces sp. Eco86]
          Length = 5393

 Score = 45.7 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 74/781 (9%), Positives = 173/781 (22%), Gaps = 40/781 (5%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
                     ++ A L+    +        P     VT+    + A + LR+      G  
Sbjct: 3204 PQGFGVHPALLDATLHALAADASADTAALPFAFTGVTV---HQGAGRTLRARLTPHDGG- 3259

Query: 72   STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
                    ++    E       +    L P  ++++        +            D  
Sbjct: 3260 -------LTVTTHDEHGTPVLTVDRLVLRPVPADLRGTTPGTDALYTLDWTPVAADTDGP 3312

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
            P + L   +        A+ L              +           +   LA     + 
Sbjct: 3313 PPAELGPDLDLDALTDPAERLLAAF--------PPDGTGGPAGISAAVHRALALLRAFLT 3364

Query: 192  SKYWTER---LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
             +   +R   L    A        A +   A      + G +++  S GS+P +  L + 
Sbjct: 3365 DERLADRTLVLRTRGAVDGDDLGAAAVWGLARSAQSESPGRVVLLDSDGSVPDSVALATG 3424

Query: 249  VANH--PNGAIVLPGLDCHIPT--AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
                    G +++P L        A W+          +     +          +  L 
Sbjct: 3425 EPQLAVRRGEVLVPRLTRTDAAEPAAWDPEGTVLITGGTGALGSTLARHLVAEHGVRHLL 3484

Query: 305  IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
            +           ++ +   + + + + +       R                + V +  A
Sbjct: 3485 LVARRGPDAPGAADLVADLARLGATAQVAACDVADREALAALLAAVPDAHPLTAV-VHTA 3543

Query: 365  DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
                +  ++     R+      K  A +  D             +     +  G P  + 
Sbjct: 3544 GVLDDGMLTAQTPQRVDHVLRPKAEAALHLDELTRGHDLAAFVLYSSAAGL-LGSPGQSN 3602

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
              ++       A+ +    +   +L     A  G                      +  +
Sbjct: 3603 YAAANAVLDALAVRRRAAALPAVSLAWGLWAGTGGMGDAADDTARRRIERLGVVPLSPEE 3662

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
               L    +   A       +     R        A +L   +     P  T        
Sbjct: 3663 GTRLFDAAVHGPAPLAVPVRLDLAALRAQARTVPPAPVLRGLVRVPARPTGTGALQAQLA 3722

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL------SSLFSKIIETGSCI 598
              + +      L            H    +L        L      S      +   + +
Sbjct: 3723 GLDDAARRRLVLDTVRTAVAATLGHTGPASLGDRRAFTDLGFDSLTSVELRNRLTARTGV 3782

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
               A    D  +       +  ++   +               + + + G+         
Sbjct: 3783 HLPATLAFDHPSIDAVTAHLLGRLTADTAPAAPAAARRAGRADEPIAIVGMACRYPGSVR 3842

Query: 659  AKNPFLSRVMQSDLNLKTA--EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
            +       V   D  +     ++            +   H   T           A+R+ 
Sbjct: 3843 SPEDLWRLVTGDDDAMSPFPTDRGWDTERLYDPDPDRAGHTYLT----SGGFLHDAARFD 3898

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
              L  +   +      ++          L+     P   R                + + 
Sbjct: 3899 AGLFGISPREALAMDPQQRLLLETSWEALERAGMDPLSLRDSDTGVFVGVMYHDYATRLP 3958

Query: 777  Q 777
             
Sbjct: 3959 S 3959


>gi|157866577|ref|XP_001687680.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68125294|emb|CAJ03051.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 4165

 Score = 45.7 bits (106), Expect = 0.048,   Method: Composition-based stats.
 Identities = 48/544 (8%), Positives = 126/544 (23%), Gaps = 19/544 (3%)

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395
            T D         +   I      + ++EA    E    +A    + + E +++      +
Sbjct: 3403 TGDGELPPASPREQQRINTLMEQLHVVEARAAEERTQRVAAEDGIRVLERERRVIREQLE 3462

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
                 R   ++ +     D             S + +L            +   +K  L 
Sbjct: 3463 ALENERAIAQVQQRQKEHDSDQREAALRRELESHVQTLTAMHAAQAGSEELQRHLKGEL- 3521

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                     + A +A   +A R           + L  +R    +         +  ++ 
Sbjct: 3522 -DVERRARAAAADSAAAHMATRDRLMRDGEEAQQQLRCERDRALQREKEALAHAAAEAQA 3580

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
             +     L   +      L T + +         +++         Q    D    L   
Sbjct: 3581 AQLQIAALRQRVESTTDQLRTAEADSREHRHRCIVAETLAAARESAQKALEDRVMVL--- 3637

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
              EEE  +  +   +  +     +       +             +   S  L       
Sbjct: 3638 --EEELSSARAARKQWQQDTDERERALRHQYEEAAASASAAMEAQRRANSEQLQRSEDAL 3695

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
              +     +   G                     +  +L    +   + A   + A   +
Sbjct: 3696 HAMQRAQAVRDEGHRTAFEDVTRKLADAEQAAHLALDDLYRERETRERTAAALQEAQSEK 3755

Query: 696  HLI----------YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
              +             +  + +  +     ++ L +          +   +    + R++
Sbjct: 3756 EELHRRFEAVLEKLHLAELDADEHSRQRDCIEALKLELEAARTQQQEAAAKAEDAFRREV 3815

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
            +   +     +       E + R     + ++L         +  L        + +   
Sbjct: 3816 ETHMRTIAALQEGRSAHDELRRRLEEELQSEKLARAADTAAHKAALVSAQGQVSQAEQRA 3875

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
             D          E    R            +Q+  +   +E         W         
Sbjct: 3876 QDIADALRR--EEEAHARTLAAMQAAEEANRQLRRARAAQETHAQQRARSWLSAREACLL 3933

Query: 866  SFLE 869
             ++E
Sbjct: 3934 KWIE 3937


>gi|322504673|emb|CBZ14502.1| conserved hypothetical protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 3658

 Score = 45.3 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 81/818 (9%), Positives = 209/818 (25%), Gaps = 26/818 (3%)

Query: 81   LGDVVEEKFTADLLLSYNLNPPVSNIQRL---LELARLILIWRNKLPDIIKDLYPESPLS 137
            L + +E        L+  L    ++ +RL   LE A+          +  +++    P+ 
Sbjct: 1383 LAEELESLQEEAERLAGELEKAQADAERLAGELEKAQEEAERLADELEKPQEMPRGWPVR 1442

Query: 138  LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
            L    A+A  LA  L  + +  E    + E       E+       A +  +  +    +
Sbjct: 1443 LGSCAADAERLADELERLQEEAERLAGELEK-AQEDAERLAGELEKAQEEAERLAGELEK 1501

Query: 198  RLVELNASSPVGYQIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN--HPN 254
               +    +    ++       AE L K  +    +AG        A  ++        +
Sbjct: 1502 AQEDAERLTAEIDKLRGDTERLAEELEKLQEEAERLAGELEKAQEDAERLAGELEKVQED 1561

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-THPQYSLAKLLDFLDIKREDVKRL 313
               +   +D     A       +     +          Q    +L   L+  + D +  
Sbjct: 1562 AERLTAEIDKLHGDAERLAEELEKLQEEAERLAGELEKAQEEAERLAGELEKAQADAEAQ 1621

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI- 372
               + ++ G +  +++          R    LE      ++   ++   +AD E + A  
Sbjct: 1622 RAENGKLCGDNERLAEELERLQEEAERLASELEKAQEEAERLAGELEKAQADAEAQRAEN 1681

Query: 373  ----SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
                     L   L+  ++++  +  +   A+     L          A    +      
Sbjct: 1682 GKLCGDNERLVEELESLQEEAERLAGELEKAQEEAERLAGELEKAQADAEAQRAEN--GK 1739

Query: 429  ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            +         +L      A  +   L K     + L      L     R  +    + + 
Sbjct: 1740 LCGDNERLAEELERLQEEAERLAGELEKAQADAEALRAENGKLCGDNERLAEELESLQEE 1799

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
               +   +   + +      +    + D E     +D +      L      + +     
Sbjct: 1800 AERLAGELEKAQEDAERLAGELEKVQADAETLTAELDKLCGDAERLAD--ELEKAQEDAE 1857

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
             ++   +      + +  +  +   +               +  E  +       E  + 
Sbjct: 1858 RLAGELEKAQEDAERLAGELEKVQGDAERLAA---ELEKLQEDAERLAGELEKVQEEAER 1914

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
            +   ++      + +++    + G  E      + +           +    +    R  
Sbjct: 1915 LAGELEKAQADAEAQRAEIDKLRGDNERLAEELENVQEEAERLAGELEKAQADAEAQRAE 1974

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
               L            +   E       L      +        +  L++          
Sbjct: 1975 NGKLCGDNERLVEELESLQEEAERLAGEL-----EKAQEEAERLAGELEKAQADAEAQRA 2029

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
            +N K  G        +L+   ++      +     E   R     E  Q   +       
Sbjct: 2030 ENGKLCGDNER-LVEELESLQEEAERLASELEKAQEEAERLAGELEKAQADAEAQRAENG 2088

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
            ++   +     + +  + +   L   +     +        E      +   +   K   
Sbjct: 2089 KLCGDNERLVEELESLQEEAERLASELEKAQEEAERLAGELEKAQANAEAQRAENGKLCG 2148

Query: 849  PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                         + +       EK Q   E++   + 
Sbjct: 2149 DNERLAEELERLQEEAERLAGELEKAQEEAERLAGELE 2186



 Score = 44.5 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 71/640 (11%), Positives = 152/640 (23%), Gaps = 16/640 (2%)

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            LE A+          + ++         +     +   LA  L  + +  E    + E  
Sbjct: 2786 LEKAQEEAERLAGELEKVQADAEAQRAEIGKLRGDTERLADELEKLQEEAERLAGELEKA 2845

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
             A    +      L  D  ++A +    +      +  +          A  L K     
Sbjct: 2846 QADAEAQRAENGKLCGDNERLAEELEKAQEEAERLAGELEKAQEEAERLAGELEKAQADA 2905

Query: 230  III-AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
              + A          RL   +      A  L G              E       +    
Sbjct: 2906 EALRAEIDKLRGDNERLAEELEKAQEEAERLAGELEKAQEEAERLAGELEKAQADAEAQR 2965

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
            + +         D   +  E  +                 ++       +    D    +
Sbjct: 2966 AENG----KLCGDNERLAEELERLQEEAERLASELEKAQEEAERLAGELEKAQADAEAQR 3021

Query: 349  IPNIQKCFSDVALI-EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELT 407
              N + C  +  L  E ++ +EEA  +A  L  + +E + + A          R+  EL 
Sbjct: 3022 AENGKLCGDNERLAEELESLQEEAERLAGELEKAQEEAEAQRAENGKLCGDNERLAEELE 3081

Query: 408  RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
            R     +  AG        +           +L      A  +   L K     +     
Sbjct: 3082 RLQEEAERLAGELEKAQEEA------ERLAGELEKAQEEAERLAGELEKAQADAEAQRAE 3135

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
               L     R  +    + +    +   +   + +      ++     D E  V  ++ +
Sbjct: 3136 NGKLCGDNERLAEELERLQEEAERLAGELEKAQADAEAQRAENGKLCGDNERLVEELESL 3195

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
             +    L             L+            Q     +         EE  +     
Sbjct: 3196 QEEAERLAGELEKAQEEAERLAGELEKAQADAEAQRAENGKLCGDNERLAEELERLQEEA 3255

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
                 E     +       ++     D E ++ +  K          E   L  +   L 
Sbjct: 3256 ERLAGELEKAQEEAERLAGELEKAQADAEALRAENGKLCGDNERLAEELESLQEEAERLA 3315

Query: 648  G----LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
            G           +            +    L++ ++   + A + E A          + 
Sbjct: 3316 GELEKAQADAEAQRAENGKLCGDNERLAEELESLQEEAERLAGELEKAQADAEAQRAENG 3375

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
            +        +  L+ L         +  K + +       
Sbjct: 3376 KLCGDNERLAEELESLQEEAERLAGELEKAQEEAEAQRAE 3415



 Score = 39.1 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 70/814 (8%), Positives = 176/814 (21%), Gaps = 34/814 (4%)

Query: 85   VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
             E +   +  L  +       ++RL E A  +     K  +  + L  E         AN
Sbjct: 2486 AEAQRAENGKLCGDNERLAEELERLQEEAERLAGELEKAQEDAERLAGELEKVQ----AN 2541

Query: 145  AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
            A  L   L  +    E    + E L              A +  +  +    +       
Sbjct: 2542 AERLRAELEKLHGDAERLADELESLQEEAER-LAGELEKAQEDAERLTGELDKLCRRTPR 2600

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
               +          A  L K  +    +AG        A  +        G       + 
Sbjct: 2601 GDELEKLHDDAERLAGELEKAQEEAERLAGELEKAQEDAEALRAENGKLRGDNERLVEEL 2660

Query: 265  HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                     +  +                  LA  L+      E  +           R 
Sbjct: 2661 ERLQEEAERLAGELEKAQEEAE--------RLAGELEKAQADAEAQRAEIGKLCGDNERL 2712

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI--ALRMSL 382
            +   +S            +  + +   +                E          L   L
Sbjct: 2713 VEELESLQEEAERLAGELEKAQEEAERLAGELEKAQADAEAQRAENGKLCGDNERLAEEL 2772

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
            +  ++++  +  +   A+     L      +   A           +         +L  
Sbjct: 2773 ESLQEEAERLAGELEKAQEEAERLAGELEKVQADAEA--QRAEIGKLRGDTERLADELEK 2830

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
                A  +   L K     +        L     R  +      +    +   +   +  
Sbjct: 2831 LQEEAERLAGELEKAQADAEAQRAENGKLCGDNERLAEELEKAQEEAERLAGELEKAQEE 2890

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
                  +   ++ D E     +D +      L               ++   +      +
Sbjct: 2891 AERLAGELEKAQADAEALRAEIDKLRGDNERLAEELEKAQEEAE--RLAGELEKAQEEAE 2948

Query: 563  NVCLDEHRKLPNLWFEEEG--------KTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
             +  +  +   +   +           + L+    ++ E    + +   +  +   RL  
Sbjct: 2949 RLAGELEKAQADAEAQRAENGKLCGDNERLAEELERLQEEAERLASELEKAQEEAERLAG 3008

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                     ++                + L               K    +   +++   
Sbjct: 3009 ELEKAQADAEAQRAENGKLCGDNERLAEELESLQEEAERLAGELEKAQEEAEAQRAENGK 3068

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
               +    + A + E        +   +         A R    L            +  
Sbjct: 3069 LCGDN--ERLAEELERLQEEAERL---AGELEKAQEEAERLAGELEKAQEEAERLAGELE 3123

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR--RILK 792
                    ++ +        +R         +       E+++   D  A  A   ++  
Sbjct: 3124 KAQADAEAQRAENGKLCGDNERLAEELERLQEEAERLAGELEKAQADAEAQRAENGKLCG 3183

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
             +     + +  + +   L   +     +        E      +   +   K       
Sbjct: 3184 DNERLVEELESLQEEAERLAGELEKAQEEAERLAGELEKAQADAEAQRAENGKLCGDNER 3243

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                     + +       EK Q   E++   + 
Sbjct: 3244 LAEELERLQEEAERLAGELEKAQEEAERLAGELE 3277



 Score = 39.1 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 87/818 (10%), Positives = 208/818 (25%), Gaps = 45/818 (5%)

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            LE A+     +      +          L      A  LA  L    +  E    + E  
Sbjct: 1009 LEKAQADAEAQRAENGKLCGDNERLAEELERLQEEAERLAGELEKAQEEAERLAGELEKA 1068

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
             A    +      L  D  ++  +  + +      +S +          A  L K     
Sbjct: 1069 QADAEAQRAENGKLCGDNERLVEELESLQEEAERLASELEKAQEEAERLAGELEKAQADA 1128

Query: 230  IIIAGSTG-SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
                   G       RL   +      A  L G              E      +S    
Sbjct: 1129 EAQRAENGKLCGDNERLAEELERLQEEAERLAGELEKAQEEAERLAGELEKAQANSEAQR 1188

Query: 289  STHPQYS--LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
            + + +      +L + L+  +E+ +RL     +    +             + R  + LE
Sbjct: 1189 AENGKLCGDNERLAEELESLQEEAERLAGELEKAQANAEAQRAENGKLCGDNERLAEELE 1248

Query: 347  NKIPNIQKCFSDVALIEADNEREEAI-----SIAIALRMSLDENKKKSALITADRNLARR 401
            +     ++   ++   +AD E + A           L   L++ ++++  +  +   A+ 
Sbjct: 1249 SLQEEAERLAGELEKAQADAEAQRAENGKLCGDNERLAEELEKAQEEAERLAGELEKAQE 1308

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
                L          A    +      +       + +L      A  +   L K     
Sbjct: 1309 EAERLAGVLEKAQADAEAQRAEN--GKLCGDNERLVEELESLQEEAERLAGELEKAQANA 1366

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
            +        L     R  +    + +    +   +   + +      +   ++E+ E   
Sbjct: 1367 EAQRAENGKLCGDNERLAEELESLQEEAERLAGELEKAQADAERLAGELEKAQEEAERLA 1426

Query: 522  LLVD-----HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
              ++          +         +        + +  +     L+    D  R    L 
Sbjct: 1427 DELEKPQEMPRGWPVRLGSCAADAERLADELERLQEEAERLAGELEKAQEDAERLAGELE 1486

Query: 577  FEEE-----------GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
              +E            +  +   +  I+          E ++ +    +    + +  + 
Sbjct: 1487 KAQEEAERLAGELEKAQEDAERLTAEIDKLRGDTERLAEELEKLQEEAERLAGELEKAQE 1546

Query: 626  STLFILGTLESRLLNFDTL--ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                + G LE    + + L   +  L+                  +    L+ A++   +
Sbjct: 1547 DAERLAGELEKVQEDAERLTAEIDKLHGDAERLAEELEKLQEEAERLAGELEKAQEEAER 1606

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF--FDNLKKRGQCYLDW 741
             A + E A          + +        +  L+RL           +  ++  +     
Sbjct: 1607 LAGELEKAQADAEAQRAENGKLCGDNERLAEELERLQEEAERLASELEKAQEEAERLAGE 1666

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP----YAVYARRILKLDFIP 797
              K     +    +  K     E         + +              A R+       
Sbjct: 1667 LEKAQADAEAQRAENGKLCGDNERLVEELESLQEEAERLAGELEKAQEEAERLAGELEKA 1726

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP------- 850
                +  R + G L  +   E + + + +   E   L  ++  +  + E L         
Sbjct: 1727 QADAEAQRAENGKLCGD--NERLAEELERLQEEAERLAGELEKAQADAEALRAENGKLCG 1784

Query: 851  --HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
                         + +       EK Q   E++   + 
Sbjct: 1785 DNERLAEELESLQEEAERLAGELEKAQEDAERLAGELE 1822


>gi|119511881|ref|ZP_01630980.1| UvrD/REP helicase [Nodularia spumigena CCY9414]
 gi|119463449|gb|EAW44387.1| UvrD/REP helicase [Nodularia spumigena CCY9414]
          Length = 811

 Score = 45.3 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 75/739 (10%), Positives = 196/739 (26%), Gaps = 63/739 (8%)

Query: 41  PLLLASVTIYVPTKRAI----QELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADL--- 93
           P     + +   T+ A      ++R    +++   +     + +L  +     +      
Sbjct: 79  PSSRRHIVVVTFTRSASANIKLKIRGYLKDLSLPPTGFA--VYTLHGLALNIASRHPNLS 136

Query: 94  LLSYNLNPPVSNIQRLLELARLILIWR-------NKLPDIIKDLYPESPLSLPISPANAI 146
            L       ++  Q    +   +  W        ++L +  +    E+      S     
Sbjct: 137 GLELENVTLITPNQSHRFIRTAVEQWINNNREPYSRLLEGHQFDGEETERLRRQSVLRTE 196

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206
            L      +I   ++     E L     +    +            + +   +   +   
Sbjct: 197 VLPDLATTVIHEAKSSGILPEKLREWSQKTTDKY--GILRVAAGLYEQYQNLMRLHDFID 254

Query: 207 PVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVA----------NH 252
                +A +R      A H+ +     +    +  S P   +L+  +A            
Sbjct: 255 YDDMILAALRVLENDSARHIEQNQVFAVFEDEAQDSSPLQTKLLEILATNQGEEAGGQGA 314

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                 L  L        +++  +       +    ST          +F  +     K 
Sbjct: 315 GGRGEELGALVLESSPPSFHSALQLVRVGDPNQAINSTFTPADPIYFREFCGVCDRLGK- 373

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
           L  +        ++I+ +    +  +       +   P   +   ++  +   + + +A 
Sbjct: 374 LATMDQAGRSTRIIIAAANFALEWVNSFYQLKNQPSPPPPFR-SQNIRPVNTSDPQTDAN 432

Query: 373 SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
            +    R       +    I     L  +  +EL       +IS  I +        LT 
Sbjct: 433 PL-PVGRGLELYTPRD---IYHTVELLSQRIVELFTQN-PKEISGAILVREHRQGRWLTE 487

Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
           +L  + K           +H +  +   E           L  L+     +    LK+ +
Sbjct: 488 MLTPMCK-----------EHKITLYDVGESDRRSHIPQEMLGLLQFCDRPHSPDYLKAAL 536

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
              +  Q   T   +  +    E+      L +     +     +  +       L +  
Sbjct: 537 EVLVQRQLIPTQDLNALA-SLPEEFLYPGPLAELQTDTVKKSAHFCRSLLRARLELPLYQ 595

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                   L+    +            +  T ++    ++   S I  +           
Sbjct: 596 LIAFLALTLKYDQAELATADKLAERVNQQITENNSMEAMLCALSEIVTSERF------EA 649

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           ++ + +  +  +   L I+   +++ L++D + +  L+E +         F        L
Sbjct: 650 VETDDLDARYTRRGQLTIITMHKAKGLDWDYVFMPFLHENLI-----PGKFWVTPKSQFL 704

Query: 673 NLKT-AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
              T +E    Q        +   H+       ++   +   R L   +       + + 
Sbjct: 705 GDFTLSEVARAQIRTAIHGESNLPHVSQAWEQAKHLKTSEEYRLLYVAMTRAKRLLWMSA 764

Query: 732 KKRGQCYLDWTRKLDYTTK 750
            ++          L     
Sbjct: 765 SQQAPFTWSKPENLQEQAP 783


>gi|256372691|ref|YP_003110515.1| SMC domain protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009275|gb|ACU54842.1| SMC domain protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 946

 Score = 45.3 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 65/703 (9%), Positives = 179/703 (25%), Gaps = 13/703 (1%)

Query: 56  AIQELRSEFIEITGKKSTILP--IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELA 113
           A + +       +G+++ + P  + ++  ++   +       + +L      + R     
Sbjct: 147 ASRIVAEALERRSGEEALVDPGLLARARTELARYETPGRSQPTGDLRQARDELDRTEAAY 206

Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE-DLHAL 172
            +     N + +  +DL   +     +    A   A+    +    E E    E +  + 
Sbjct: 207 LVATADVNAVAEARRDLETIAEQLATLPDDEARLKAEQDERLRRRAELEGLDVEVERSSR 266

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232
           +            + L+   +  +           +   +   R +   +          
Sbjct: 267 RVADLSDAIARELEALERQRELASALARSRERIEQLDRDLEERREQLTRVQAQLGASHDG 326

Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS--- 289
                      R     A        +      +   +   +  ++              
Sbjct: 327 LDQARRELGELRETQARAREREALASVAAGAERLSAQVARAVELRNRVAALEIAPPRRLD 386

Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS--MVISKSFLPPDTSDMRNTDILEN 347
                SL +    L   R   + +G        RS  +V++      + +      I E 
Sbjct: 387 DALVASLQEAEARLLATRTVFETVGPSLTIRSERSVEVVVNGDLQRLEPAHAMVRPIDER 446

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLEL 406
            I ++     +++   A +E EE  +    L  SL   +  ++  +            +L
Sbjct: 447 IIVSLGDVTMEISPGSAVSELEELAAERTRLLASLGVASLDEARALLEKAAQYDHELDQL 506

Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
            R   N+      PL      +   +                     L+      +  + 
Sbjct: 507 RRELANLAPDGIEPLDDEATRARAAASRLDDAPELAPSDELERRVRALSDHVEALEAAAE 566

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
                E       +      + ++L L++             +    E+ +         
Sbjct: 567 EAQVAERRYHEDLEQLVGAREREALQLEQAERDLAAEPAESDRVARIEDLERELETERHR 626

Query: 527 ILQCITPLVTYKTNKNSTCGNLS-ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
             +    + T            + +   +           L E R        +    L 
Sbjct: 627 HRELTDAIETRNHLDEELEVLATELGGLSNRRAELTTQRRLLEERLERATGLADRVVNLE 686

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG--TLESRLLNFDT 643
                +    + ++        ++  L + +    +  ++    ++      +     + 
Sbjct: 687 ERLEGLRRRVAVLEGQRAAARRLVEVLEEEQRRARERTEAPYRQLVERILTATLGERVEV 746

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
           ++   L      + T+    L+    + L+  T E+             G   ++   +L
Sbjct: 747 ILDEHLGVESLRRPTSSRTALATTPIAALSAGTREQVELACRFAATQLTGAVPIVLDDAL 806

Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
             ++  T     + +L  L        L    + YL  +    
Sbjct: 807 GYSDT-TRTRMLVAQLTALATDAQAIVLTAHPERYLGASDAER 848


>gi|169236231|ref|YP_001689431.1| helicase [Halobacterium salinarum R1]
 gi|167727297|emb|CAP14083.1| putative helicase [Halobacterium salinarum R1]
          Length = 878

 Score = 45.3 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 63/217 (29%), Gaps = 26/217 (11%)

Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
           D T     Y        +         ++I+  +  P   Y  ++  L      K     
Sbjct: 64  DATEDGAGYATAASSWVVVEPEFVVDVTDIRSFVQCPRLYYLNKLSGL----PLKY---P 116

Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
             +GT+ H +  +L++ R      ++   + Q +D    +  L               + 
Sbjct: 117 VTKGTIVHEVFGDLLRGR------DLEASVAQRVDEAGLELGLLGRSRAEVEADVRDNAS 170

Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925
           +     ++ + + E       ++  + S    + G  D I   + G     + KTG N  
Sbjct: 171 AIEGWLQQGRLTDED---EWRSEYTLVSERFGIKGRCDAI---RRGMP--VELKTGKN-T 221

Query: 926 KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
               +     Q +  A  L               L Y
Sbjct: 222 NREPRFHDKVQAACYALMLDEHGV----PADTGTLLY 254


>gi|213965863|ref|ZP_03394054.1| ATP-dependent DNA helicase [Corynebacterium amycolatum SK46]
 gi|213951441|gb|EEB62832.1| ATP-dependent DNA helicase [Corynebacterium amycolatum SK46]
          Length = 710

 Score = 45.3 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 48/455 (10%), Positives = 119/455 (26%), Gaps = 77/455 (16%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA  E+R    ++           ++                        
Sbjct: 55  QKVLAVTFTSRAAGEMRDRLAKMGTPGV----QARTFHSAA------------------- 91

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN---LADIIDIIET 161
                  L +L   W     D+   L  +    +       + L  +   + D++  IE 
Sbjct: 92  -------LRQLRYFWPQVAGDMPWQLLDDKKFRVVAQAVRRVGLDTSKETIRDVMGEIEW 144

Query: 162 EEKKW---EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA- 217
            +      +   A   E       L+A+ +    + + +     +        + +  A 
Sbjct: 145 AKATLAGADQYQAALREHGRT-APLSAEKIIDCYRAYEDIKTTPDGLLLDFDDLLIHTAG 203

Query: 218 ------EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
                       +      ++       P   R+++      +   V+   D +     +
Sbjct: 204 AMENSRAVAEEFRNQYRCFVVDEYQDVTPLQQRVLNAWLGDRDNLTVV--GDANQTIYSF 261

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
              T +             +P+ ++ +L        + V                  +  
Sbjct: 262 TGATPQYLMNF-----SRDYPEATVVRLQRDYRSTPQVV------------------ELA 298

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKS 389
                           K+   ++   +    + D+E  EA + A +++  +D      + 
Sbjct: 299 NNVIGRAQGRIAGSRLKLIGQRQDGPEPTFNQYDDEPMEARATARSIKRLIDAGTPASEI 358

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA---- 445
           A++      +   +  L+  G+   +  G             + L  + + +  +     
Sbjct: 359 AVLYRINAQSAVFEQALSEVGVAYQVRGGDGFYQRPEIRDAIAALVRVSRSSRTVPTLQG 418

Query: 446 --IATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
             +  LVK   A  G  ++    A       +LR 
Sbjct: 419 TNLLDLVKQVFAGLGMTDQEPEGAGARERWQSLRA 453


>gi|226943286|ref|YP_002798359.1| ATP-dependent dsDNA exonuclease SbcC [Azotobacter vinelandii DJ]
 gi|226718213|gb|ACO77384.1| ATP-dependent dsDNA exonuclease SbcC [Azotobacter vinelandii DJ]
          Length = 1137

 Score = 45.3 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 64/767 (8%), Positives = 153/767 (19%), Gaps = 29/767 (3%)

Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
           +    +        L+              L            +      L   +     
Sbjct: 221 EERAAVLAAEEAPLLARQGELQARRQWRAELEQAELRCREAG-EASRRAGLALAEAAPQL 279

Query: 182 LL--AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
               A +          +              +  +RAE     +     +  AG     
Sbjct: 280 ARLAAGEPAAALLPAHRDWQQACQQLEQGERNLTQIRAERRQAGEAVGLHLWQAG----Q 335

Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
            A    ++              L   +          +               Q  +A L
Sbjct: 336 FARRIAVAAQEQARRLHSQHRQLAEQLAEQPRYAELGERLGAWRERFECHRQWQEEIAAL 395

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            D    ++  +  LG    +                 ++ +  + L+  +    +     
Sbjct: 396 QDRQRNEQAALAELGERQRQAQEHLRRRQAELDSACAAERQARESLDTLLQGEPESALRE 455

Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
              +A + R     +    R       + +A+     +  RR   +  R  +        
Sbjct: 456 HWRQAQSRRNLLQQLEQNARQRGSGEARLAAIDAELADGRRRHGEQQARLELLRQRYRDS 515

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
                    +L      +        +      PL          +     L        
Sbjct: 516 QALVAARKKLLEQERRILDLEAQRSQLQPGEPCPLCGSREHPAVDTYRALDLSAGERDLQ 575

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
               ++  L                      R  E+D +      +   Q    L T   
Sbjct: 576 AAEAELEALLREGEAARDALAVLDAELGALRRRREQDGDELRRQREQWRQLCAELGTEPI 635

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
           +  +     ++ +        LQ + L       +    +  +       + +       
Sbjct: 636 DLAAIRD--ALDERLAAFEGRLQQLELGRQAVAQSAEARQRMERACEQDGQQVRLLEERL 693

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
             +      +   +          + +    L      L +     L             
Sbjct: 694 LASRGRAQELDERLRQCRELLSRGEQALAEELAAFGHPLPDDGAAWLA----------RR 743

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
           +  +     + +   +   + + Q+A                S       T  +  +   
Sbjct: 744 QGEWQDWQRRQNRLQQLERERLEQSALVEAAEKQAALWQGRWSELGEAGRTAPAECVDAQ 803

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
             L G +            LD  R+             +                  QL 
Sbjct: 804 DALAGAEAG----------LDAARRRANELDGRLLSLEEQVRQQRRHLEACGAHWRAQLA 853

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
             P+A  A     L          D   R          L+     +    +        
Sbjct: 854 RSPFADEAAFRAALLDDAQRAALQDLKARLERARTEALALLAAAEGRLAGLLAEPRTTAS 913

Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
               E++       +           + L  +++ +   + +F  I 
Sbjct: 914 GEELERQAQELAGRLRSLAEEQGAIRATLSADDERRQGRQALFAEIE 960


>gi|134097688|ref|YP_001103349.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|291006353|ref|ZP_06564326.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910311|emb|CAM00424.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 693

 Score = 45.3 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 32/375 (8%), Positives = 84/375 (22%), Gaps = 34/375 (9%)

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTV 249
            +        L+    + +  A++    E     +      ++       P   R++   
Sbjct: 180 YEKLKNGAQVLDFDDLLLHTAAILEEHPEIAEEFRDRYRSFVVDEYQDVNPLQQRVLDAW 239

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
               +   V+   D +     +     K              P+ ++ +L          
Sbjct: 240 LGKRDDLTVV--GDANQTIYSFAGAAPKWLVGFPRRF-----PEATVVRLERDYR----- 287

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
                  + ++   +  +  +     +             P            E D+E  
Sbjct: 288 ------STPQVVALANQVIDAARERPSGTRLRLVGQRPDGPRPNFA-------EFDDEPA 334

Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
           EA +IA  +     +     + A++      +   +  L    I   +  G         
Sbjct: 335 EAHAIAHKIAKLAKQGVALSEMAILFRVNAQSEVYEKALADAEIPYQVRGGERFFARTEV 394

Query: 428 SILTSLLNAIFKLND-----FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
                 L A     +        +  ++         P    +R +    +  +   +  
Sbjct: 395 RQAMVTLRAAASRYEQSGDLPADVREVLTEVGLTDEPPGGGAARERWESLIALVELAEEL 454

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
              +    L                            A   ++     +  LV       
Sbjct: 455 AATVPEADLARYVAELDVRAESQHPPTVEGVTLASLHAAKGLEWDAVFLAGLVEGTLPIQ 514

Query: 543 STCGNLSISDWTKLT 557
                 +I +  +L 
Sbjct: 515 HADTPAAIEEERRLL 529


>gi|157866858|ref|XP_001681984.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68125435|emb|CAJ03295.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 3115

 Score = 45.3 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 68/694 (9%), Positives = 151/694 (21%), Gaps = 41/694 (5%)

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
              L++      E L E  A   V   +  +   AE     T+    I  S+  + A    
Sbjct: 1720 ALLRVIEAAAHETLREPEAVVYVFRYMERLGRAAESADAATRDGETIL-SSSPVEAFLAF 1778

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
              +       + V   +      A            +       T        + D L  
Sbjct: 1779 YMSSTTLRRASPVSERVCLAALLACAANTRRGDAAASPPTVDLLTLLTAFTHVVSDHLVT 1838

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
            + +  +   + S  +    +      +P    D     +    + N      +V ++ + 
Sbjct: 1839 EWQQGRLSPHQSAVLTEWMLRFLWGGVPVSPMDASTASLKRYGVVNAAAADGNVTVVASA 1898

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
                     A+ LR +      +  L+T    +   ++ E          +AG     T 
Sbjct: 1899 ---------ALPLRRA----SMQWLLVTRGSIVPPPLRDEGAEASTPSACAAGDSAPQTP 1945

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG-NKNSYD 484
             S    S    +  +      +   +  L          +   +    +  R    +   
Sbjct: 1946 PSRAAASAERIVSLVASLDRASQRFEACLGGVVVSPSAAAALGDDSSCMLSRESLASELP 2005

Query: 485  IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
               L                        +++         D +   +    T        
Sbjct: 2006 PRHLPVGSPSADENLVRTVLQQLSTRHAAQQLLRRYQSPHDALRSPVRVQDTEAEALVQA 2065

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                +                  +         +                     A    
Sbjct: 2066 LPEDARDSAKATLRGGADLAASYDGDSARKASRQMARSHARQSVRPAPAANEEEAAELES 2125

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL------------NEG 652
            W+D     +   T          + +    +     +  L +  L               
Sbjct: 2126 WLDAAVASLASTTPGFAPPPPLPVILRCPEQEGGRTWSALYMQLLSITKNVHQGREERAH 2185

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
                 +     L   ++    L               +A+ +  L       + ++    
Sbjct: 2186 STAGASESLHDLDGYVRRRAVLLRP----ALLRLMSNLADTSSRLDPASPSPDGDVGPCV 2241

Query: 713  SRWLQRLLVLGGTDFFDNLKKRGQCYL----DWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
               L    VL             +       +  R L   +      +  P         
Sbjct: 2242 CSLLLMCYVLLPLRSLRPPPSLAEVLAVVRQELWRLLLACSSASGAGQCAPHA--SGYLP 2299

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG----TLFHNIITELIKKRI 824
              S++ + QL   P  + A   L+L      +      +       L H +  ++ + R 
Sbjct: 2300 RTSYNALVQLCVRPLMLEALPQLRLPTFASSESGAAAFEAVASGLLLVHRVSADVFEIRA 2359

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
              +T      +     S     N    +    R 
Sbjct: 2360 LSSTLADTAAIYTSHRSTVPDANAVNALQQTARE 2393


>gi|317121622|ref|YP_004101625.1| hypothetical protein Tmar_0783 [Thermaerobacter marianensis DSM
            12885]
 gi|315591602|gb|ADU50898.1| hypothetical protein Tmar_0783 [Thermaerobacter marianensis DSM
            12885]
          Length = 1188

 Score = 45.3 bits (105), Expect = 0.062,   Method: Composition-based stats.
 Identities = 60/830 (7%), Positives = 174/830 (20%), Gaps = 33/830 (3%)

Query: 79   KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL----YPES 134
            +++  + ++    +  ++       +      +LA +          +            
Sbjct: 256  RAIEQLDQKIQELEARIAREREAADNLELVRRQLAEITKGRSEADRQLRLARQRREAWVD 315

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
                     +      ++       +    + + L   +  ++  W  LA +  +     
Sbjct: 316  WRRRVERYLDRARQRASMEQAAQRAQRLRLEMDRLDQEEEREWPGWAALAGENGEDPGAA 375

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
                L    A++    Q    R +       +   +              L         
Sbjct: 376  LQRLLELEQAAAARKEQREAARRKQRQATARSLLAVWF--------RYRFLAQAAGALDR 427

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
             +  +P L    P  +             +           +A L   L  +   ++   
Sbjct: 428  LSERVPRLATATPEELERLRDAPRREAELAR---------QVALLEGELRAREAALRDWQ 478

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
              +  +      +         +     D+ E      ++            +    +++
Sbjct: 479  AEAEALDAAYAAVRHWTAETAAAAAELADLRERAERQQEEARRREEESRERRKAARRLAV 538

Query: 375  AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
             +AL   +        L      L     L     G      AG P  T           
Sbjct: 539  MVALLAGVAVAAAGRILDLTPWLLPLVAGLSTFAAGWVAWRWAGGPAQTGPAGEDGDLRG 598

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                       +A      L       +     ++ LE    + ++   + +  +     
Sbjct: 599  RIQQLEARLGPLAGEPPSRLRDLERQFREWRALRDGLEQRRQQLDRQGPEEVRTRLDAAR 658

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                       P                 V  + + +         +       ++ D  
Sbjct: 659  AQVQALRQWLEPFLAGARDAVRVAAWWEAVSRLRRRVEDERAQLAREVWGARPDAVPDLP 718

Query: 555  KLTVTCLQNVCLD---EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                                L +L    + +T+S   + +    + +    IE       
Sbjct: 719  AGDGEGWWWERARRLTGDAALADLGGPPDSRTVSEFAAWLESGEASVWEKPIEEAARWAE 778

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            L        +  + S +       + +  +       L                    ++
Sbjct: 779  LAQRAAEWCQALEGSWIPGDDPDPAAVPAWPPTFYDHLVHLQAASEREAAASAQDGEAAE 838

Query: 672  LNLKTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
              L T ++        +              R   +        R      + G    + 
Sbjct: 839  AQLDTLQREQSALRERWRELLEPAGGDPARARERWQAFGAHRQRRRELEKQLEGVLTAWG 898

Query: 730  NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                              T             P            ++ L      + A  
Sbjct: 899  VADADALAIRVQQAADAATVDLKAIHDLAERFPELPADDLEPARAVEALAQLDVEIEALE 958

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE--- 846
              +L+ +    ++  R + G L    +     +   +        ++  +D+        
Sbjct: 959  T-QLNRLEEELRELSRREAGYLQREPVNVAQAELELRALRAERQGLQDELDALVLAYRHL 1017

Query: 847  -NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
                      +R    + +  +            ++ ++    + +    
Sbjct: 1018 KEAQVEFQATYRQRLEEAASRYFARLTGR--PGRRVALDDGFHITVREPD 1065


>gi|159117990|ref|XP_001709214.1| Axoneme-associated protein GASP-180 [Giardia lamblia ATCC 50803]
 gi|157437330|gb|EDO81540.1| Axoneme-associated protein GASP-180 [Giardia lamblia ATCC 50803]
 gi|213495868|gb|ACJ49154.1| head-stalk protein GHSP-180 [Giardia intestinalis]
          Length = 1585

 Score = 45.3 bits (105), Expect = 0.064,   Method: Composition-based stats.
 Identities = 83/787 (10%), Positives = 197/787 (25%), Gaps = 19/787 (2%)

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
                      +  L  I+ L   V+E          +     +  +++  L   I    N
Sbjct: 548  EADATRGADAAEYLARIEELQQQVKELSGRSRDAPADETAIRALEEKIRALTDEIEARDN 607

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            ++ ++ + +       +   PA    L +    + D ++      E L     ++     
Sbjct: 608  QIAELKELVDGAPAQPVETDPAQLTALEEENGRLKDELQALNDALEALRKSGADEASGLR 667

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
               A   K  S    E L    AS        L+  + E L    +  + +        A
Sbjct: 668  GQVAHLNKEVSD-LKEALANARASGDASDVERLVELQ-EQLEDAQEQLLSLKDRYDCAVA 725

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
                M            +   +    +   + + E+   +           Q    +L  
Sbjct: 726  EMEDMRRELEQKPVGSTVYTDEPGASSEDLDRLKEELDALREEV-------QVLNEELEV 778

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                 RE    L  ++  +  +  +I+      D++  ++   ++     I      VA 
Sbjct: 779  MHGQNREQKDELNRLNGALDAKESLIADLKAQLDSTVPQDDARIKILEDEIADLRGTVAA 838

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
             +      E  +    L         K   +    +  RR++ E+ +    +      PL
Sbjct: 839  RDDAIRGLEEKTA--RLAELEQLAADKGKEVADKEHSLRRLEDEVRQLNDALCELREKPL 896

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP----EKYLSRAKNALELVALR 477
            S           ++A  +++D           +  F          L    NAL      
Sbjct: 897  SVAPSDQSGAEYVDAQTEISDVDPEEQAKVSSILDFDDGLVQKVDELQALVNALTGENDH 956

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                   IM     + + +   +  +           +       LV+ + + +      
Sbjct: 957  YKGEHARIMAEMDALKEDLRNGRLRSDSLEGDKERLMKQVRDLTDLVESLRKDLGAPQDQ 1016

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                        +       +   +       +    L         +   S+++     
Sbjct: 1017 GEVAALRQEVADLRSRVDELIDAAKGKDETIEQLEKELAIARASAENTERLSELLAEVEG 1076

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
             KA   E  +++  L+     K      +T  +    +          +  L   V    
Sbjct: 1077 YKAKLGESKEMVDSLLAQLASKDAELAGATTGLRAVTDDDGAELAKARVASLENEVAELR 1136

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
               N  L+ +     NL  ++    +   +         +    +    +   +     Q
Sbjct: 1137 GQLNAKLAEIDAVHKNLVDSDAEAARLREELGGL----RVQLEAAQVPEDTERVRMLEDQ 1192

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                           +  +   +  R    T       + +       + R  + +   +
Sbjct: 1193 LQDARKELAELRAALEAKEMETEGLRAELATADPELANKLEASEATVRELRESAEALQDK 1252

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L     +  A   L+       K      +        I EL ++  +    +       
Sbjct: 1253 LHALSDSRAADGDLQKLVEQLEKDLSGAKELVAERDATIDELKQRLRDTEEYDDLKERIA 1312

Query: 838  IIDSHFE 844
             +D    
Sbjct: 1313 ELDDEIA 1319


>gi|257093991|ref|YP_003167632.1| exodeoxyribonuclease V subunit beta [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257046515|gb|ACV35703.1| exodeoxyribonuclease V, beta subunit [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1239

 Score = 44.9 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 105/1023 (10%), Positives = 227/1023 (22%), Gaps = 123/1023 (12%)

Query: 19   REMIPALLNGTLVENFRYDPLNPLLLASVT---IYVPTKR---AIQELRSEFIEITGKKS 72
            R +    ++  L +       +P   A +    +     R     +      I+  G  +
Sbjct: 175  RHIASGAISPALADYLAQRQDSPEGWARLLGRQVAKSHSRVIWPAELASEAAIDTPGLAA 234

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
                  +  G        A L     L+        +   AR   +W      +      
Sbjct: 235  AFARAGQLWGGDGAAPTGALLAGLAALHAGSYKADGVSTGARAWTLWLASGDPLRAPDPE 294

Query: 133  ESPLSLPIS-----------PANAIWLAKNLADIIDIIE--TEEKKWEDLHALKNEKYGM 179
            +S   L  +                       D++      T+      L+ L+      
Sbjct: 295  KSKARLFTANFIAARKRNNQTPPTHPFFHAANDVLARHASVTQALHLARLYLLRRMLDES 354

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
               L     +   + + + L  ++A+   G    L         +      +I     + 
Sbjct: 355  GAALRQQKRRQRVQSFDDMLQNVDAALTSGDFPWLAGFL-----RSRYPVALIDEFQDTD 409

Query: 240  PATARLMSTVAN---HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---THPQ 293
            P    + S +      P    +    D       +      +               H Q
Sbjct: 410  PLQYAIFSRIYGAGEAPAAGPLFLVGDPKQAIYSFRNADLHTYLAARRQAGARYTLRHNQ 469

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
             S A L+   +           +   +    + +     PP T                 
Sbjct: 470  RSTADLIAASNALFTAN-PHAFILAGLNYEPVTVGDKPRPPLTDHSEEDPAALRVWRLPA 528

Query: 354  KCFSDVALIEADNE--REEAISIAIALRMS---------LDENKKKSALITADRNLARRV 402
                 +   EA  +  R  A  +A  LR +                 A++       R +
Sbjct: 529  ANGEYLLRGEAKKQVLRATAGEVARLLRAAQAGRITLGERALAPGDIAILVKSHAQGRLL 588

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
            +  L + GI     +   +  T  +  L  +L AI +      + + +   L        
Sbjct: 589  RDALLQVGIGSVELSQHSIFHTPDAEDLERVLLAIREPARPSLLYSALATELLGLNATGV 648

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                A     L  +       +    +   +               ++ +  E     +L
Sbjct: 649  AALAADEMGLLQTIARFSGYRETWLRRGFGVML-------------RAWMDSEAVAFRLL 695

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
                  + +T L+           +    D     +   +     E      L  +    
Sbjct: 696  ARSDGERRLTNLLHLGELLQQASADQPAPDALLRWLASRRRDDGAEEVHQLRLESDRNLV 755

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             + ++          +    +          D        +    +     L++      
Sbjct: 756  QIVTIHKSKGLEYGIVFCPFLWDGHQSNFGEDEGKEYHDDDGLPVIDFRLELDAADAEEI 815

Query: 643  TLILGGLNEGVWP-------KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
                    +  +           A+  +L     ++L         G  +    +  G  
Sbjct: 816  KRRRREEKDAEFMRLLYVALTRAAQRCYLVAGCYANLAFGKPSMAQGTHSLLNWLVAGKD 875

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                     + +   I + W       G      +L       L  T     +       
Sbjct: 876  MSYADWLKHKRSPEEIEAAWRALATTAGPPLSLSDLPGEAPTPLASTAVSAASLSALVAP 935

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-------RTDR 808
            R            +       +     +   A   L     P     PD           
Sbjct: 936  RTMAAGWRIGSFSSLQHGADSEASASDHDGRAVPALPAVSGPAADIGPDDILLFARGPAA 995

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP--HIDIIWRHLFHKISHS 866
            G   H +   +      +           IID       L P    +        ++   
Sbjct: 996  GDCVHALFERIDFTDPGRWP--------AIIDEVLASHPLSPVGPPNGDSARRPARMLRR 1047

Query: 867  FLEHEEK-------------IQSSIEKIFVNIPAKMA-------------------IESI 894
             L+                  +  + ++  N+PA +                       +
Sbjct: 1048 LLDDVLATSLPGGIVLSTVGRRQRLVELGFNLPAGLTAPRLNDWLAAHGYPLPRLGFPPL 1107

Query: 895  GIHLTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAAA 943
              +L GF D +    +    + D+K+                   A+     Q  +   A
Sbjct: 1108 DGYLKGFIDLVFCHAN-RFHVLDWKSNHLGFAAADYGQQQVAAAMAEHGYHLQYLIYCVA 1166

Query: 944  LKA 946
            L  
Sbjct: 1167 LHR 1169


>gi|157869463|ref|XP_001683283.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68224167|emb|CAJ04669.1| hypothetical protein LMJF_22_1320 [Leishmania major strain Friedlin]
          Length = 2046

 Score = 44.9 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 55/672 (8%), Positives = 144/672 (21%), Gaps = 28/672 (4%)

Query: 221  HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280
                       IA  + +   T   +  VA      +    +       I          
Sbjct: 1002 QEHPEALREAFIADVSHACHVTRGDVEHVAFEMGSLLATVRVQHDADATIMEMDRRLQEY 1061

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
                        Q         L         + ++  ++                 D  
Sbjct: 1062 DYPLTMELYRLRQGPKRGADAALATVAHRDTEIADLREQLREAEERARDVEAQQSDRDAE 1121

Query: 341  NTDILENKIPNIQKCFSDVALIEA-DNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
               + E    ++++  S   ++ A + +REEA      LR  L   + +   + A+    
Sbjct: 1122 IDRVKELLSSSMREAASSGEMLGALEEQREEAAREMRGLREQLAVAQVRREALDAEVADL 1181

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
            R    E      ++   A         + +   L  A  +  D  A          +   
Sbjct: 1182 REQLREAEEHARDV--EAQQSDRDAEVADLREQLREAEERARDVEA----------QQSD 1229

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
             +  ++  +  L               D  + V D     +              +    
Sbjct: 1230 RDAEVADLREQLREAEEHARDVEAQQSDRDAEVADLREQLREAEERARDVEAQQSDRDAE 1289

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
               L + + +        +  ++       ++D  +      ++    E ++        
Sbjct: 1290 VADLREQLREAEEHARDVEAQQSDRDAE--VADLREQLREAEEHARDVEAQQSDRDAEVA 1347

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV------KPKIEKSSTLFILGT 633
            + +       +        +++    ID +  L+           +              
Sbjct: 1348 DLREQLREAEEHARDVEAQQSDRDAEIDRVKELLSSSMREAASSGEMLGALEEQREEAAR 1407

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
                L     +               +         +            + A   E    
Sbjct: 1408 EMRGLREQLAVAQVRREALDAEVADLREQLREAEEHARDVEAQQSDRDAEVADLREQLRE 1467

Query: 694  TRHLI--YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
                         + +      R   R       D       R     D   +L    + 
Sbjct: 1468 AEERARDVEAQQSDRDAEVADLREQLREAEEHARDVEAQQSDRDAEVADLREQLREAEEH 1527

Query: 752  PHYKRPKP-FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                  +      E         E ++   D  A  + R  ++  +    ++ +   R  
Sbjct: 1528 ARDVEAQQSDRDAEVADLREQLREAEEHARDVEAQQSDRDAEVADLREQLREAEERAR-- 1585

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870
                   +  +     +  E     ++       +++         R    +      + 
Sbjct: 1586 --DVEAQQSDRDAEVADLREQLREAEERARDVEAQQSDRDAEVADLREQLREAEEHARDV 1643

Query: 871  EEKIQSSIEKIF 882
            E +      ++ 
Sbjct: 1644 EAQQSDRDAEVA 1655


>gi|325107795|ref|YP_004268863.1| serine/threonine protein kinase [Planctomyces brasiliensis DSM 5305]
 gi|324968063|gb|ADY58841.1| serine/threonine protein kinase [Planctomyces brasiliensis DSM 5305]
          Length = 1335

 Score = 44.9 bits (104), Expect = 0.066,   Method: Composition-based stats.
 Identities = 88/790 (11%), Positives = 201/790 (25%), Gaps = 66/790 (8%)

Query: 54   KRAIQELRSEFIEITGK-KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
            +RAI+ LR     +  + +  +       GDV   +    +L + +    +       E 
Sbjct: 537  RRAIEALRQMLATLGDRCQLILAFDDLQWGDVDSIRLLRTILDTADPPRLLLLGTYRSEE 596

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
                   +  L                ++P +   LA+ L         E    +    L
Sbjct: 597  RDRSPCLQTLLAGEGGKTPLSERELTELTPDDCAQLARELFG------KEGLDEQSAARL 650

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASS----------PVGYQIALMRAEAEHL 222
              E +G  +     FL+    Y +       +            P   Q  L        
Sbjct: 651  ARESHGSPF-----FLQELIAYASADDTGPTSLDAAILNRVHRLPEDQQRLLQMIAINGQ 705

Query: 223  MKGTKGPIIIA--GSTGSIPATARLMSTVANHPNGAIVLPGLDC-------HIPTAIWNT 273
               T+  +  A  G +         +   +       V P  D         +       
Sbjct: 706  PIATRDALEAAEVGFSDLEQLRGGHLVRTSGLSRSDFVEPYHDRIRESVAASLSEDQSKR 765

Query: 274  ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
               +      +      H   S  + +  L       ++    +      +         
Sbjct: 766  AYRRLAETLETREQTEPHILASHWRAVGNLPRAAGYFEQAAAEAMRKLAFNQAARLFQQQ 825

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDV-ALIEADNEREEAISIAIALRMSLDENKKKSALI 392
             +       +  +    NI + ++     I+A    ++A         + +  +   A +
Sbjct: 826  AECLAEPTREQQQTIAANIAQAYASDGQGIQAAEYFQQAAEYTDEPEQAFEYRRLAMARL 885

Query: 393  TADRNLARRV---KLELTRFGINIDISA--------GIPLSTTLHSSILTSLLNAIFKLN 441
                +L       +  LT   +    S         G     +     L S      +  
Sbjct: 886  FQVGSLDEAFVLLRELLTDVNVGYPESMSEVVRGIVGERALQSPGIRQLMSFR---GRGT 942

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD---LKSLVLDRIAT 498
            D   +A  ++   A                ++V  R    + D+ +   L++      A 
Sbjct: 943  DRATLAKRIRTCWAAAQTLSILDPVRGYYFQMVGERTAARAPDLDEAVQLRAYGACLKAA 1002

Query: 499  QKNNTHVPHWQSRLSEEDKELA-------VLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
                  +   Q   ++     A          V         L++      + C    + 
Sbjct: 1003 SGKRRDIAAAQKTFADIRANAALNSSVYLETFVSMCEGVTDYLLSNFPQSIARCRQAMLD 1062

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEE--GKTLSSLFSKIIETGSC--IKANAIEWID 607
              ++      +           + +  +    + L+++    ++               +
Sbjct: 1063 FQSECPGAWWEADLSRTFAIFSSNFSGDINNLRELTAVDEFTLQKRKTTFYTIMVRADAE 1122

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            I+ ++   +             +L   E   L+F+   L    E  + +   +   LSR 
Sbjct: 1123 IVLQIAADDLSAATQRTEQLASLLNFDEFNNLHFNY-YLRRFWELRYAQAGRECWELSRE 1181

Query: 668  MQS--DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
            ++S    +L +A  +   + H      G   L+ T            S  +QR +V    
Sbjct: 1182 IESGYKASLLSAHHWARASYHMNRGLAGVLALLETPGTVGIGNTVEISNDVQRQIVRLRR 1241

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF---SEIKQLINDP 782
            +       + +        L    K              A+ + +       + +L   P
Sbjct: 1242 EQKPFCDVQAELLTAGLATLADPRKAIAPLHKALEHSKAAELQLFEAVCLDRLHRLKAVP 1301

Query: 783  YAVYARRILK 792
              + A  +  
Sbjct: 1302 AGIDAETVCG 1311


>gi|214003831|gb|ACJ60951.1| VEG9 [uncultured soil bacterium]
          Length = 1865

 Score = 44.9 bits (104), Expect = 0.066,   Method: Composition-based stats.
 Identities = 58/548 (10%), Positives = 128/548 (23%), Gaps = 32/548 (5%)

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
              +  +R+   AR +  W    P         S         +   LA  L D+ D    
Sbjct: 1053 AAARPERIPLTARQLRAWLLARPGEDTAGQHISVALRLRGRLDVPALASALGDVADR--- 1109

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                    H +    +                     L  + A+     ++   +   + 
Sbjct: 1110 --------HEIFRTTFPGDAQSVYQ---HIHDAAVVELTPVQATEEDLPRLLAEKRIFDL 1158

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
              +      +   S        ++   +A+  +  +    L      A       +   +
Sbjct: 1159 TREMPWRCDLFELSEKEHVVHLQVHRILADDDSMDVFFRDLAAAY-GARREGRVPERAPL 1217

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                  Y+   Q  LA   +   +  E +    +    + G +++      P   S    
Sbjct: 1218 ALQFADYAIWEQRLLADERELDSLINEQIVFWRDNLAGIDGETVLPFDRPRPAIPSRRAG 1277

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
            +  L  +     +  + V    AD        +  AL M L +      L+         
Sbjct: 1278 SVDLRLEAGPHAQLMAAVEEAGADPF----QVVHAALAMLLTKYGAGHDLVIGTTLPRDE 1333

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
              ++L            +    +   + L  +      +                     
Sbjct: 1334 DLIDLEPMIGPFARPVALRTDLSGDPTFLEVVTRVQEAVQAAQE-----------HMDVP 1382

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                     L     R       +  L+       AT+                + +LA+
Sbjct: 1383 FERLAELQDLPASLSRHPVFQVGLEVLEENFSSWDATELPALRTSPEPVGAEAMELDLAI 1442

Query: 522  LL--VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
             L            +              +     +  V  L+ V  D  R+L +L    
Sbjct: 1443 KLDERRDDDDNEDGIEGTLRYATDLFDEDTAESVARRLVRVLEQVAEDPQRRLSDLDIFL 1502

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
            +    +            + A   +   +   L+D +           L++ G       
Sbjct: 1503 DDTERNRPPIAPARWSGDVPAAVADLGPLGALLLDEQLRPVAPGAVGDLYVTGPAVDAGD 1562

Query: 640  NFDTLILG 647
               T+ + 
Sbjct: 1563 AGPTVPMP 1570


>gi|194367786|ref|YP_002030396.1| exodeoxyribonuclease V subunit beta [Stenotrophomonas maltophilia
            R551-3]
 gi|194350590|gb|ACF53713.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas maltophilia
            R551-3]
          Length = 1226

 Score = 44.9 bits (104), Expect = 0.066,   Method: Composition-based stats.
 Identities = 87/855 (10%), Positives = 192/855 (22%), Gaps = 96/855 (11%)

Query: 165  KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
                  AL  E+       A +FL       T+RL  L  +  V     L+   A  L  
Sbjct: 325  PLARYVALLAERDAWLRATALNFLHALRAEATQRLQALKRTRRVQTYDDLIDGVALALEG 384

Query: 225  GTKGPII-----------IAGSTGSIPATARLMSTVANHPNGAI-------VLPGLDCHI 266
              +  ++           +     +      +  TV               +    D   
Sbjct: 385  PQRLTLVKQLRAQYRIALVDEFQDTDDRQWGIFHTVFGDSPEVRELGLAPALFLIGDPKQ 444

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
                +      +          +     +       L   +      G  +         
Sbjct: 445  AIYGFRGGDIHTYLKAKQVAQQAPVLDQNFRSRPAVLRALQALYDNGGEDAFLERDIQFE 504

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA-----ISIAIALRMS 381
              +        D +        +            + AD  R+ A      +I   L  +
Sbjct: 505  PVRPGGVRIDEDYQRDGHAATALTLRVLRSGGDKAMSADASRDAATQACVAAIHQILVEA 564

Query: 382  LD---------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                             A++      A  V+  L   GI    +    L  T  +  L +
Sbjct: 565  RAGNAVLRGRPVQPGDIAVLVRSHREATLVQRALAAVGIPAVAAGKQSLFATSEARDLRA 624

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR---GNKNSYDIMDLK 489
            LL A+ +  D   +  ++   L             +  L+          +  +      
Sbjct: 625  LLLALLQPADEGRLRAVLATVLLGQRASAIAAMEREGDLQREFQAQLLHWRERWQRGGPF 684

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI---------TPLVTYKTN 540
            +++ D  A Q           R      +L  LL +   Q +            +     
Sbjct: 685  AVIADVCAAQGERLLALIDGERRLTNYLQLGELLQEASAQALGMHGLLDWLQGQMASADQ 744

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
             +        SD  ++ +  L      E+  +   +   +G   ++     +  G   + 
Sbjct: 745  DDEQQLLRLESDARRVQIITLHKSKGLEYPLVFLPFVGIDGGAPNTASHCTVHVGGQRQL 804

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL---------ILGGLNE 651
            +     D        +  + +  + + L  +G   +    +  +          L  L  
Sbjct: 805  HWKLDKDEAWEAASNQREREQRAEDARLLYVGLTRAEHALWIAVGDLAGLGKTRLAPLLG 864

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
             +       +  +          + A +  G       +     H  +  S     +   
Sbjct: 865  DLQALRAHADVHIDDSEAPAALPQLAAEVEGDLPAVRALTRRVPHDWWVYSF--TQLAHA 922

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
             +     +             +     L     L   T       P     + ++     
Sbjct: 923  DAGVGNDIEAAATELPAPAADEPAGPELPLEPALPEPTVAAEDSAPIDPRFMGSRFGNV- 981

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD-------------RGTLFHNIITE 818
                + + N  +A +      L       +   +                  L   +   
Sbjct: 982  --LHEAMENVDFAAWGDWQPGLQAPEGQAEVLRKALHDEGYADADLDDGVAVLVPLVGHT 1039

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
            L                ++  +  F     P  +  + + L      S        +   
Sbjct: 1040 LTVPLPEGGALHSLGEGERRAEIDFHFAIEPTTVPALLQVLHAHGVSST------RRGFG 1093

Query: 879  EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-------KKETAQK 931
            ++  +       I+   +              G   + DYK+   P              
Sbjct: 1094 QRRRLEGLMTGMIDLTYVR------------DGRWYVLDYKSNRLPGYSPDLLAIAMRHS 1141

Query: 932  LIDPQLSLEAAALKA 946
              D Q  +   AL  
Sbjct: 1142 EYDLQALIYTVALHR 1156


>gi|289667697|ref|ZP_06488772.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 1120

 Score = 44.9 bits (104), Expect = 0.066,   Method: Composition-based stats.
 Identities = 73/832 (8%), Positives = 171/832 (20%), Gaps = 129/832 (15%)

Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTVANHPNGAI--- 257
            +    V + +   +A+A      T+  I ++     +      + S V      A    
Sbjct: 190 DDLVDGVAHALQGAQADALVARLRTQYAIALVDEFQDTDDRQWSIFSNVFGEGPLAHAAG 249

Query: 258 ----VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------KLLDFL 303
               +    D       +     ++    +     +    ++             L    
Sbjct: 250 LEPALFLIGDPKQAIYGFRGGDVRTYLAAAVTAELAPPLSHNFRSRPGVLAAIDALYAQA 309

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
                 +           G   V         T+            P  +      +   
Sbjct: 310 GYSDAFLTDGIAFHPVHAGTKRVDEDLQRDGVTAPALTLWRAPEPPPPARGKPKPWSAGR 369

Query: 364 ADNEREEAISIAIAL-----------RMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
           A      A   AI               +        A++      A R++  L   GI 
Sbjct: 370 ARALATAACVAAIRGWLAGGRDGTATINARPVQAGDIAVLVRSHGEATRIQQALGAVGIP 429

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
              +    L  T  +  L +LL A+    D   +   +   L                  
Sbjct: 430 AVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGEDAIAIAALE------ 483

Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
                                 R               R   +      L+ D       
Sbjct: 484 ----------------------RDGEHHRRWQQQALDWRERWQRGGPLALVGDLGATHGQ 521

Query: 533 PLVTYKTNKNSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
            L+     +      L +++   +     L    L +         ++  +         
Sbjct: 522 RLLALIDGERRLTNYLQLAELLQEADARALGPHGLVDWLSRRIANADDNDEAQQLRLESD 581

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                 +  +  + ++     +    +    + +    ++   E              + 
Sbjct: 582 ARRVQIVTLHKSKGLEYPLVFLPYIGIGRGDKGAGRHCVVHAPEIGRQLHWKTERDDPSW 641

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
                   +           + L  AE  +  A+  F     T      R+L        
Sbjct: 642 SAAEAAWKQEQRAEDARLLYVGLTRAEHALWIASGPFHQHERTALAGMLRALDALQG--- 698

Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
                      G      +              ++         +    P       T  
Sbjct: 699 ---------AAGEGAVVIDTSTPPANLPRLPPPIEAQVPPARNPQRHIAPEWWVYSFTQL 749

Query: 772 FSEIKQLINDPYAVY---------------ARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
            +       DP A                 A  +   +    F         G + H++ 
Sbjct: 750 ANADAGAATDPMASATVVGSGGSDEPSGSEAVAVAVANEAEPFDPRFAGNRFGVVMHDVF 809

Query: 817 TEL-------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII-------------- 855
                      +        +   +++ +    + ++ L   + ++              
Sbjct: 810 ERCDFAAWHAWRPGQAAPDGQAAPILEALQRGGYAQDELDDGLRMLTALIGHTLTVALPE 869

Query: 856 --------------WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
                                +  + ++    +      +             G+ +TG 
Sbjct: 870 GTRLADVPEPQRRNEMEFHFAMRPTRVDALLALLHRFGVVGDRQAFGARQRLEGL-MTGL 928

Query: 902 ADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDPQLSLEAAALKA 946
            D +     G   + DYK+   P        +  A    + Q  +   AL  
Sbjct: 929 ID-LTYTVDGRWYVLDYKSNRLPSYDADALARAMAHSEYELQALIYTVALHR 979


>gi|313667280|ref|YP_004049681.1| ATP-dependent nuclease subunit B [Oceanithermus profundus DSM
           14977]
 gi|313153911|gb|ADR37761.1| ATP-dependent nuclease subunit B [Oceanithermus profundus DSM
           14977]
          Length = 784

 Score = 44.9 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 53/498 (10%), Positives = 113/498 (22%), Gaps = 58/498 (11%)

Query: 56  AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115
           A + L + F    G      P  K L    +  +T  L     L PP+  ++R+  +   
Sbjct: 46  ARRHLLARFAREQGG----APGFKVLH--WQALYTEILAELGRLGPPLDALERIALVGEA 99

Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
           +     + P   +                    A   A  I  ++    K + +     E
Sbjct: 100 LREVDGRTPGPGE--------------------ASLFARAIAELKRYGVKPDSVPEPDRE 139

Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235
                       L+     + E         P   +   +    E L +     +I+ G 
Sbjct: 140 AAR---------LRQVYARYEELRQGRRYQDPDDRRNEALEHLGE-LERLPYATLIVDGF 189

Query: 236 TGSIPATARLMSTVANHPNGAIVL-PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
               P   R +   A      +V  P     +PT+     +       +           
Sbjct: 190 RELSPVEVRFLKAYAKLGGEVVVTSPAPVPTLPTSQLLEESHVELERFALPNVVEE---- 245

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
                     + R     +  VS            +      +      + +    ++  
Sbjct: 246 ------ARWVMARVKRLLVDGVSPSEIVVVTPPGLASHYRHFAQRFEVPLADEHTESLAD 299

Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINI 413
                 L++     +   + A+     L+    +  AL  +      R+  EL       
Sbjct: 300 LDEGRHLLDRLALADHPTADALRRVPGLEPLAARLYALGVSGMEATERLASELGLEER-- 357

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
              A   L             + + +L     +      P A       +L  A   +  
Sbjct: 358 FEEARRMLEPEPS----EDPEDWVRRLIQEDPLLA--SSPWADEFMRAGFL--AARFVNG 409

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                 +       L   +       +  T     +      +                 
Sbjct: 410 HDYDPARMRDWWRALLGTLRPVRQEARGVTFTTAGRLGGRRFEHAFVAGAFAGAYLTGEQ 469

Query: 534 LVTYKTNKNSTCGNLSIS 551
              +  +          +
Sbjct: 470 EDYFLPDDPGVRLPWDAA 487


>gi|268315891|ref|YP_003289610.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
 gi|262333425|gb|ACY47222.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
          Length = 1032

 Score = 44.9 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 50/584 (8%), Positives = 134/584 (22%), Gaps = 121/584 (20%)

Query: 43   LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
              A       T+RA  E+R+    + G+ +  +  + +   +                  
Sbjct: 518  DPAQCLAVTFTRRAADEMRTRLQALLGEAAADV-TVTTFHGLG----------------- 559

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                        L+  + ++L                +  A  +   +    ++  I   
Sbjct: 560  ----------LELLQTYGDRLGLPQPLRVATEAEQRAVLEAQGLSPTQA-QRLLPRISYR 608

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            ++                     + L+   + +   L E             ++   +H 
Sbjct: 609  KRTG---------------QPGDERLETTLQAYDRALRESGRVDYDDLIRLSVQLLEDHP 653

Query: 223  M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                  +     I +           RL+  +A   +  + + G D       +     +
Sbjct: 654  DVADACRERFRWIAVDEFQDVDANQYRLLRLLAPEADARLFVIG-DPDQAIYGFRGGDVR 712

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                 +S+   +                                                
Sbjct: 713  CFLQFTSDYPKTRQVLLRQNY--------------------------RSTQAILEAAARM 746

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------------------ 379
              R + + + ++  ++     V ++   +ER EAI +A  +                   
Sbjct: 747  MARASLVPDRELVAVRSGGVPVEVVACPSERSEAIFVAETIEKLIGGTSYYALDSGRADG 806

Query: 380  MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS------- 432
                      A++      A  ++  L + GI     +   L+       L +       
Sbjct: 807  EERSYTFGDVAVLYRTEAQAAELQEVLAQAGIPYQKRSHRLLAELPEVEALLAYLQENPK 866

Query: 433  ------LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-RAKNALELVALRGNKNSYDI 485
                  L       ++  A+  +++   A+ G   +          E            +
Sbjct: 867  GPLAERLERWAATTSEREALLGVLRALAAQCGDDLEAFRNELALRSEADLWDARAEGVSL 926

Query: 486  MDLKSLVLDRIA-------TQKNNTHVPHWQSRLSEEDKELAVLLV------DHILQCIT 532
            + L +               +         +    +E +E  +L V      + +     
Sbjct: 927  LTLHAAKGLEFRVVFIVGCEEGLLPLTYDGRVDPEQEAEERRLLFVGMTRAQERLFLTHA 986

Query: 533  PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                +     +   +  ++D     V    +           L 
Sbjct: 987  QRRRWMGRVRTPEPSRFLADLPARFVRRRTHTVRRSPTGGRQLE 1030


>gi|116689237|ref|YP_834860.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia
            HI2424]
 gi|116647326|gb|ABK07967.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia
            HI2424]
          Length = 1235

 Score = 44.9 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 95/903 (10%), Positives = 213/903 (23%), Gaps = 92/903 (10%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAG 234
            W  L A++L +A     ER       S       L  A   H      ++      +I  
Sbjct: 338  WLALIAEWLDMAPGELAERKRTRRVVSFDDLLANLYHALHAHPWLAETLRARYPAALIDE 397

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---TH 291
               + P    +   +        +    D       +      +     +  +       
Sbjct: 398  FQDTDPLQFAIFDRIFAPRG--PLFLVGDPKQAIYSFRAADLHTYLAARARASACYTLAV 455

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP-PDTSDMRNTDILENKIP 350
             Q S   ++D  +       R   +    Y      ++   P  D +D            
Sbjct: 456  NQRSTPAIVDACNRFFLSNPRAFVLDGLDYYAVRAGTRVRAPFVDETDPGPAGDFRVWAL 515

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---------KSALITADRNLARR 401
               +        +A   +  A  IA  +R + +   +           A++         
Sbjct: 516  PGGEGTLLKRDAQAQAAQACAAEIARLMRGAREGRVRLGESPLSPGDIAVLVQTHRQGSL 575

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            VK  L  +GI     A   + +T  +  L  +L AI    D   +   +           
Sbjct: 576  VKRVLATWGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLRRLRAALASDWFGLDAGA 635

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN---------THVPHWQSRL 512
             +     +           ++  +  ++     R+  ++             +   +  +
Sbjct: 636  LWRMEQGDGDAPPGASAADSADAMSWVERFSRYRLLWRERGFAVMWRTFTRELRIAERLM 695

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
            +  D E  V  ++H+ +      + +     T   L+              +  D +   
Sbjct: 696  AGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGGGEEAQLRLESDRNLVQ 755

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI---ITRLIDGETVKPKIEKSSTLF 629
                 + +G   + +F   +  G   +  +    D         D        ++++   
Sbjct: 756  IVTVHKSKGLEYAVVFCPFLNDGGLREPPSSALPDAREYHDDAGDAVLHYGCDDEAAAHA 815

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF- 688
                L  +      L+   L   V+       P+LS     +         +  A H F 
Sbjct: 816  ARQALREQAAERARLVYVALTRAVYRCYVVAGPYLSSRSTREARRSVLNWLVAGAGHAFD 875

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
               +         +          S     +          +   +       TR L   
Sbjct: 876  AWLDEPPDEAALEAAWRALAGGPVSVAPLPVPARRERLAAGHDASQTLAARHATRVLRDA 935

Query: 749  TKQPH--------YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
             +            +       +           +  +  D   ++A  +          
Sbjct: 936  WRLASFSSLTASMAREEAGVAAVPDDELRPDHDALAAVTPDGELIFADTVATDPPDDDIL 995

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
              P     G   H +                   +              P +      + 
Sbjct: 996  VFPRGAAAGECLHRLFELSRFTEPESWHAAALGALHD------RPVEAEPALAARLPAMM 1049

Query: 861  HKISHSFLEHEE---KIQSSIEKIFV--NIPA----------------------KMAIES 893
             ++    +  E         ++       +                         +A+E+
Sbjct: 1050 VRLVDDVVHTELVPGMRLVDLDPAKRLDEMGFLFPAPSLDLLALRRLLVAHGYPDVALEA 1109

Query: 894  IGIH--LTGFADRIDLLKSGFVDITDYKT---GDNPKK--------ETAQKLIDPQLSLE 940
              +   + GF D I     G   I D+K+   G  P            A      Q  L 
Sbjct: 1110 GTLAGFIKGFIDMIVEH-DGRFWIVDWKSNHLGTTPDAYGPRALDVAMADHAYHLQALLY 1168

Query: 941  AAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
              AL      ++        +A   Y+ ++          +     A   +   +  L  
Sbjct: 1169 TVALHRYLRGRLPDYDYDTHIAGYLYLFVRGVRPGWRSGGEPAGVHARRPARALVDALDR 1228

Query: 997  IVT 999
            ++ 
Sbjct: 1229 MME 1231


>gi|313126003|ref|YP_004036273.1| DNA/RNA helicase, superfamily i [Halogeometricum borinquense DSM
           11551]
 gi|312292368|gb|ADQ66828.1| DNA/RNA helicase, superfamily I [Halogeometricum borinquense DSM
           11551]
          Length = 902

 Score = 44.9 bits (104), Expect = 0.070,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 70/248 (28%), Gaps = 28/248 (11%)

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
           L R+ + G      +L + G   L    +      +P Y   K    +         ++I
Sbjct: 58  LVRVTLWGKWTHTADLAEPGMDLLVTDAEESEYRGEPTYSTAKESYVVLEPDFLVDVTDI 117

Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
           +  +  P   Y  ++  +              +GT+ H +  +L++    ++  +     
Sbjct: 118 RSWVQCPRMYYLNKLSGI----PLNY---PVVKGTIVHEVFGDLLR---GRDLDDAIEER 167

Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
                                          +L      Q ++ +      ++  + S  
Sbjct: 168 VAEAGLQLGLLGYDATEVEDEVRRNAAAIEGWLA-----QGTLTEED-EWRSEYTLISPT 221

Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-QLSLEAAALKAGSFSQIDC 954
             + G AD +   + G     + KTG N   +   +  D  Q +  A  L          
Sbjct: 222 FGIKGRADAL---RRGMP--VELKTGKN--LKRDPRFQDKIQAAAYALVLDERGV----P 270

Query: 955 RKVANLFY 962
                L Y
Sbjct: 271 ANTGTLLY 278


>gi|308162868|gb|EFO65237.1| Axoneme-associated protein GASP-180 [Giardia lamblia P15]
          Length = 1425

 Score = 44.9 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 68/635 (10%), Positives = 149/635 (23%), Gaps = 38/635 (5%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            +  E+     +    + +     +Q+ L   R             +           +  
Sbjct: 800  EAREKALAEAIDGLADHSGAAQQLQQELAALRRDAAENAAALREARAQAAAHQEDAQLKA 859

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT-ERLVE 201
            A    L++ LA + +    +  +  D  AL +    +     A   ++A        L  
Sbjct: 860  AQLEDLSEELARLREQAAEDAVRARDAEALADRAAELETQAKAAEERLADARARIAELEA 919

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
              A+       A  +   +          I         A A      A           
Sbjct: 920  HAAAGTEALADAAEKFRVKAQQAQGGDEAIRRLEADVRAAEAERDEARAALDKALD---- 975

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
             +     A    +  +   + +         Q + A+L    D      + LG +++   
Sbjct: 976  -EAAALEAEHKNLEAERDALAAQLAEAQDALQTARAQLAAAEDRVSALTENLGAMNDAKA 1034

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
                +                +I++ +   +         +E      EA +  I +   
Sbjct: 1035 QIREMQDTIPDLRQAIRQHQEEIIQLQQTLVASQ------MEFARRTHEAQANEIQMAEL 1088

Query: 382  LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
            LD    +   I     L      +L      ++      L+     + L  L  A  +  
Sbjct: 1089 LDNLNAQMDEIA-TMKLEAEESQDLADRVAQLERDKKELLAE---VADLKKLNRASEERA 1144

Query: 442  DF--------MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            +             + +K  ++     +  +S  +  LE      ++ +  +  L++   
Sbjct: 1145 NDSKERTQRLEDFVSELKSQMSDTQIYDIEVSALRKELEQKQGELDEKTVALDLLRNEAD 1204

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKEL----AVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
                   N             ED            D +   +                 +
Sbjct: 1205 RLREEADNRERELQQLRDQDNEDAAERIVQLEAERDDLHATLDAKDKEIGQLTDELSRTT 1264

Query: 550  ISDWTKLTV--------TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
             S     T                 +   K   L    +    +             +  
Sbjct: 1265 ASVEAARTRIQALEDEAAARAEQAEESAAKTARLRNRVDELENALQSLGREAQARAEEVQ 1324

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
              E       L  G T     +  + +  L    + L +        L E +        
Sbjct: 1325 DRERQLTAMDLRRGATDSALEDAQNRIRRLEDESAALTDKLEAREKALAEAIDGLADHSG 1384

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
               ++ +Q +L     +     AA     A    H
Sbjct: 1385 --AAQQLQQELAALRRDAAENAAALREARAQAAAH 1417


>gi|167587571|ref|ZP_02379959.1| exodeoxyribonuclease V, gamma subunit [Burkholderia ubonensis Bu]
          Length = 474

 Score = 44.9 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 43/446 (9%), Positives = 97/446 (21%), Gaps = 29/446 (6%)

Query: 48  TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107
            I VP+    + L  +  E  G  + +     +       ++    +      P  S   
Sbjct: 35  QIIVPSAALRRRLELDIAERHGVCANVEFTYLA-------QWLWAQIGRVMTVPARSPFA 87

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN-AIWLAKNLADIIDIIETEEKKW 166
               + R   +      D      P     L  S       LA+ +A ++D   T   +W
Sbjct: 88  PDRLVWRCYRLLAQASGDAPWLASPRLAGYLSASDDAMRYELAQRVATVLDHYLTYRPEW 147

Query: 167 EDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVEL-NASSPVGYQIALMRAEA 219
                                  A D  +  +  W   L EL ++ +P  ++        
Sbjct: 148 LAAWQAGESVLAGDGAPRGIGDAARDDERWQAALWRALLAELSDSGTPPAHRFLGDARHL 207

Query: 220 EH---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
           +            + +       P    L+  ++   +  I            I      
Sbjct: 208 DLDTVARADWPESVSVFALPTMPPLHVALLRELSRWIDVRIYALNPCREFWFDIVTAAHA 267

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++ +               LA+       +   +  L   +        V + +      
Sbjct: 268 EALDAAGRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAASSDASRYVGNPAPTWLAR 326

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                 D+              + +    +   +   +   L    D +           
Sbjct: 327 IQNAILDLQPEAELGEPPAEHGIEVHVCHSLARQLEVLHDRLLAWFDADDSLRPSDVLVA 386

Query: 397 NLARRVKLELTRFGI----------NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                    L                  IS   P      + +L   L    +      +
Sbjct: 387 VADLAAAGPLIDAVFGTSGAGGARIPYRISGLPPSQANPVARVLLDWLALPERQVGAPEL 446

Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALE 472
              ++       +     +       
Sbjct: 447 VEWLRVDAVAARYGIDAAALETVQTW 472


>gi|184200541|ref|YP_001854748.1| hypothetical protein KRH_08950 [Kocuria rhizophila DC2201]
 gi|183580771|dbj|BAG29242.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 1533

 Score = 44.9 bits (104), Expect = 0.078,   Method: Composition-based stats.
 Identities = 46/520 (8%), Positives = 114/520 (21%), Gaps = 27/520 (5%)

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
            L  L  ++       A  FL+   +     L    A    G + A        L+     
Sbjct: 751  LTDLGPDEVR----RALVFLRSELQRRERVLAAHGAHDLRGARDAAGDPVIRELVVVVDE 806

Query: 229  PIIIAGSTGSIPATARLMSTVANHPNGAIVLPG--LDCHIPTAIWNTITEKS----TNIT 282
              ++  +         +++ V       +VL        +P  +   I++          
Sbjct: 807  AKMLTDAFPDAAHELAVVAAVGRSLGVHLVLATQRPQGALPADVRTNISQALCLRVRTEQ 866

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
             S           +   L            +   +  +        +             
Sbjct: 867  ESMDVIGEGRACRIPPSLPGRGFLDRGDGPVEVQAAVLTRLRAPAPEPLTVEFLGPSDGH 926

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEA---ISIAIALRMSLDENKKKSALITADRNLA 399
                   P++    S V          EA            ++           ++R + 
Sbjct: 927  RGRRPSGPSVPAGTSPVQTSGTAGAGIEACVRDVAQAWDTEAVRGPCVPVEAGASERAVP 986

Query: 400  RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
              +    +      D     P +             A+++     ++A +      +   
Sbjct: 987  TSLPHSFSPGPATEDGVDLGP-AENPAGHW---CGRAVWRPWTDGSMALV-----GRPSA 1037

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
              +      +A   ++   +  +      ++               P     ++   +E+
Sbjct: 1038 VRESFLALLHACTAISCERHATARHASGARNAPGPGGVVAPGRGGEPVALYLITASGREV 1097

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
              LL          +  +   ++       +      T          E    P      
Sbjct: 1098 PGLLTGDGEVLHPAVRGWARAEDPADVAHVLRALRAATERGANGTGDVERHGGPEPRAVL 1157

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                       +         +     D++  +  G T       +    ++    S L 
Sbjct: 1158 AVDDWDRCCQHLRAGAWAHLED-----DLMALVDAGTTAGLSALVAGDRMLVTGRASHLC 1212

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
                 +  G             PF  R  ++ L    A +
Sbjct: 1213 PNRLHLPAGQPADGLMHWPRLPPFTVRPHRAALGGPAAGR 1252


>gi|149917626|ref|ZP_01906123.1| DEAD/DEAH box helicase-like protein [Plesiocystis pacifica SIR-1]
 gi|149821689|gb|EDM81087.1| DEAD/DEAH box helicase-like protein [Plesiocystis pacifica SIR-1]
          Length = 1570

 Score = 44.9 bits (104), Expect = 0.080,   Method: Composition-based stats.
 Identities = 69/788 (8%), Positives = 172/788 (21%), Gaps = 40/788 (5%)

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            G  +      +      L P     +R     +                +P    +    
Sbjct: 790  GSALFAARFRENAARALLLPRRQPGKRTPLWMQRKRSADLLSVATRYRNFPIILETYREC 849

Query: 142  PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA--DFLKIASKYWTERL 199
              +   L   L +++  I+    +  ++ +     Y    +      FL    +   ER 
Sbjct: 850  LRDVFDL-PALRELLRQIQDRRIRVREVESRTPSPYASAVVFTWVGQFLYDDDQPRAERR 908

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA-----RLMSTVANHPN 254
             +  A      +  L  AE   L+       +        P        ++   +    +
Sbjct: 909  AQALALDYAQLRELLGDAELRELLDRDAIAEVELLLQRLDPRRHVRDRDQIHDALRELGD 968

Query: 255  GAI--VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
             ++  +       +  A+   +         +  T +  P+   A+           V  
Sbjct: 969  LSVDELRQRCAPDMRDALEGHVEALLAARRVAAVTVAGSPRLVAAEDAGRYRDAIGVVPP 1028

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
            +G     +       +   L    +              +      V  I    +  E +
Sbjct: 1029 MGLPLAFLEATEDSEALVELVARYARTHAPFPAAALATRLGLGLGPVRAILERLQGRERV 1088

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                 L    +       ++     L R     LT     +   A            L S
Sbjct: 1089 LEGEFLPGGREREWCDVEVLRR---LKRASLARLTAAVEAV--EARRYARFLPLWHHLDS 1143

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
                + +L   +     V  P                +  ++             ++S+ 
Sbjct: 1144 PAEGLDELLGAIEQIQGVAIPFGDLERDVLPARVRAYSPGMLDQLCAMGELVWRGVESVG 1203

Query: 493  LDRIATQK-NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
             D        + H           D   A  L   I   +                   +
Sbjct: 1204 KDDGRVALYLSGHYRALAPGPRPADDRPAGELHQRIRATLAAGGAMFFADLERKLGGFQA 1263

Query: 552  DWTKLTVTCLQNV-----------CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
            +        +                                         +       A
Sbjct: 1264 ELLDALWALVWAGEVSNDTFSPLRARARSSTRAASSRGRGRGRTRPSLHGAMHLRRAGPA 1323

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD---------TLILGGLNE 651
             +     ++  L +    + +   +  + +L                    T        
Sbjct: 1324 GSEGRWSLLPALAEDAPSETERATARAVQLLERFGVVTREAVRGSGLAGGFTAYYPVFKA 1383

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
                    +  F++ +  +   L  AE  + +     + A G+   +   +    N    
Sbjct: 1384 MEGAGKIRRGYFIAGMGGAQFGLPGAEDRLRED----DGAPGSDPAVVLAACDPANAYGE 1439

Query: 712  ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            A  W +R           ++       L W  + +            P P +  +     
Sbjct: 1440 ALPWPRREGARPQRAPGAHVVTCEGHLLAWLSRTEKHLLTFLDADAHPDPAVRERLGERL 1499

Query: 772  FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
               +  L+  P       +L+          P              + + ++ +++  + 
Sbjct: 1500 VQGLVALLRQPQGRRKAMLLERIDDEPAIAHPLAAAFVNAGFRKTHDGLLRQRDRSWQDD 1559

Query: 832  NHLMKQII 839
                 +++
Sbjct: 1560 ESAALRVL 1567



 Score = 41.4 bits (95), Expect = 0.89,   Method: Composition-based stats.
 Identities = 67/604 (11%), Positives = 160/604 (26%), Gaps = 34/604 (5%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            AR+   W   +   +++        L      A  L ++ A     +       +D+  L
Sbjct: 726  ARVHAPWATAVAGRLREFGGVEVDLLWTDDGMAFRLPESDAPPPMDL--FFPDPDDIERL 783

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232
              E  G   L AA F + A++       +    +P+  Q            +    PII+
Sbjct: 784  VVENLGGSALFAARFRENAARALLLPRRQPGKRTPLWMQRKRSADLLSVATRYRNFPIIL 843

Query: 233  AGSTGS------IPATARLMSTVANHPNGAIVLP--GLDCHIPTAIWNTITEKSTNITSS 284
                        +PA   L+  + +       +       +    ++  + +   +    
Sbjct: 844  ETYRECLRDVFDLPALRELLRQIQDRRIRVREVESRTPSPYASAVVFTWVGQFLYDDDQP 903

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                           L  L    E  + L   +       +            D  +  +
Sbjct: 904  RAERRAQALALDYAQLRELLGDAELRELLDRDAIAEVELLLQRLDPRRHVRDRDQIHDAL 963

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
             E           ++    A + R+   ++   +   L   +  +  +     L      
Sbjct: 964  REL----GDLSVDELRQRCAPDMRD---ALEGHVEALLAARRVAAVTVAGSPRLVAAEDA 1016

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK------LNDFMAIATLVKHPL--AK 456
               R  I +    G+PL+    +    +L+  + +           A+AT +   L   +
Sbjct: 1017 GRYRDAIGVVPPMGLPLAFLEATEDSEALVELVARYARTHAPFPAAALATRLGLGLGPVR 1076

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL----VLDRIATQKNNTHVPHWQSRL 512
                           E +     +   D+  L+ L    +    A  +      + +   
Sbjct: 1077 AILERLQGRERVLEGEFLPGGREREWCDVEVLRRLKRASLARLTAAVEAVEARRYARFLP 1136

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
                 +     +D +L  I  +            ++  +     +   L  +C       
Sbjct: 1137 LWHHLDSPAEGLDELLGAIEQIQGVAIPFGDLERDVLPARVRAYSPGMLDQLCAMGELVW 1196

Query: 573  PNLW---FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
              +     ++    L               A+     ++  R+         +  +    
Sbjct: 1197 RGVESVGKDDGRVALYLSGHYRALAPGPRPADDRPAGELHQRIRATLAAGGAMFFADLER 1256

Query: 630  ILGTLESRLLN--FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
             LG  ++ LL+  +  +  G ++   +    A+    +R   S    +   +     A  
Sbjct: 1257 KLGGFQAELLDALWALVWAGEVSNDTFSPLRARARSSTRAASSRGRGRGRTRPSLHGAMH 1316

Query: 688  FEMA 691
               A
Sbjct: 1317 LRRA 1320


>gi|262194639|ref|YP_003265848.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
 gi|262077986|gb|ACY13955.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
          Length = 1333

 Score = 44.9 bits (104), Expect = 0.081,   Method: Composition-based stats.
 Identities = 82/750 (10%), Positives = 167/750 (22%), Gaps = 37/750 (4%)

Query: 50   YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV-VEEKFTADLLLSYNLNPPVSNIQR 108
             V  +R  +EL  +   +  +   +L     + D+         LL +     P     R
Sbjct: 512  VVARRRLARELVDKLQTLQQRAPVLL----VIEDLHDATDSARALLGALLATLPGDGASR 567

Query: 109  LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
               LA      R  L   +++      L L       +     +A  +  +         
Sbjct: 568  PAVLATTRPEGRAPLETALRERVELLWLVLEPLAPVQVA---EIAATMLAVTASGVPPAL 624

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA-------LMRAEAEH 221
            L  L+    G   LL    L+         L                      +R     
Sbjct: 625  LAHLQRI-GGGNPLLVQSELRALVDRGDLLLASSGWELRADALSEHGFAEGTAVRDLLAT 683

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
            L   T+  +  A   G    T  L+  V      A++       I  A+  ++ +     
Sbjct: 684  LSAATRSLLSAAAMCGPRFDTE-LLCQVTRAHQDAVI-----DAIDEAVRASVVQPVHGP 737

Query: 282  TSSNTTYSTH--PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            +  +     H     ++   LD     R        +          ++  F        
Sbjct: 738  SPQDEYAFEHDRLAEAVRAELDAEQRTRLHDAIGAALVARGDASQATLAFHFSRGSDPVR 797

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD----ENKKKSALITAD 395
                +        + C  D A     +  E+   +    R        E    + ++   
Sbjct: 798  AYEHLHAAARAASEACDFDAARRHLHSALEQVEHLPEDRREHAHIECTELLADALIVLGH 857

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
             +        L   G+   + A   L     +            L       T++  PL 
Sbjct: 858  PHEGIAALDRLPVAGVPPVVQARW-LRKRGLAR--LRTNQVAEGLQQLQQALTVLGDPLP 914

Query: 456  KFGFPE--KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            +  F    + +      L    LR      D    +  ++ R     +        +   
Sbjct: 915  RSRFGRSLRMVRDLALTLGRWLLRRRPAPRDPALEERALVHRELGVLSRWIDLERSAAHL 974

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                 LA  L    L+              +  +L+     +       +  L    ++ 
Sbjct: 975  VAFIRLAHRLGVAALRVEAYAGAALILSLRSWRSLAAWSDQRARGLAESSGDLRGLARVH 1034

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
             +             + +      ++         +                 T      
Sbjct: 1035 VVRGGAATFIACDDETVLGHFREGLRLAERTGDRFLMIFALSMRGWATTIIGHTAQAFDD 1094

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             +        L +  + E      +  + F           +       + A     A  
Sbjct: 1095 FDRADALAAELEVPWMREDAACGRSLLSFFHGDPRTVAHTARRLLASDLRVALPVFEAFA 1154

Query: 694  TR----HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
                          R        +R   RL  L            G+  L    +     
Sbjct: 1155 NEMLGGDAFVNGRFRAAVNYFELARAHFRLHHLYRGWGLTCKLLYGEALLCLADEEGAHA 1214

Query: 750  KQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                  + +P      +    S      L+
Sbjct: 1215 VPDLLVQLRPLMGWSQRAARLSPFHGCDLL 1244


>gi|325921091|ref|ZP_08182966.1| glutamine synthetase adenylyltransferase [Xanthomonas gardneri ATCC
           19865]
 gi|325548436|gb|EGD19415.1| glutamine synthetase adenylyltransferase [Xanthomonas gardneri ATCC
           19865]
          Length = 941

 Score = 44.9 bits (104), Expect = 0.082,   Method: Composition-based stats.
 Identities = 80/706 (11%), Positives = 161/706 (22%), Gaps = 36/706 (5%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           ARL       L +   D +             A  +A +   +    + E + WE    L
Sbjct: 200 ARLGQQLAKLLDETTADGFSHRVDLRLRPFGTAGRVALSFTGMDRYFQREGRDWERYAWL 259

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------ 226
           K             +L+    +   R ++  A   +    A + AE     +        
Sbjct: 260 KARAVAGDMAAGEAWLETLRPFVYRRYLDFTALDGLRDMKAAITAEVARHDRLDDIKRGP 319

Query: 227 ----------KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                     +   +I G         RL+  +        +       +  A       
Sbjct: 320 GGIREIEFLAQSLQLIRGGREPTLRERRLLPALRALVAAGQMDADNGDALIEAYRFLRRL 379

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +      PQ +L +    L +   D   L         R        L P  
Sbjct: 380 ENRLQMLRDAQTHALPQAALDRERIALGLGYADWSALLQALAPQRARVAAEFAELLAPRV 439

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI-----AIALRMSLDENKKKSAL 391
                  + +      +   + +A I   +       +     +  +R   D    +   
Sbjct: 440 HATAPDALADYWRALPEGDAAPLAGIGLHDPAGAHQVLVDFAQSSGVRALSDTAGARLDR 499

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +      A     +       +       L  T + ++L    +A+ +L D ++ + L+ 
Sbjct: 500 VMPALLHAATRASQPDAAVRRMLGLLQATLRRTSYLALLDEQPSALARLVDVLSRSALLA 559

Query: 452 HPLAKFGFPEKYLSRA--------KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
             LA        L           + AL    +   +       L+ L   R+A      
Sbjct: 560 ERLAAHPLLLDELLDTRISGPLPDRAALHTACVDTLQIDDTEAALRELNERRLALNFRIA 619

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                  +   +  +    L + ++Q +  L   +                         
Sbjct: 620 LATLDGRQQPVDSTQQLAWLAEAVVQTVLQLARRELVAAHGQVPGGAFAIIGYGSLGGLE 679

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIE----TGSCIKANAIEWIDIITRLIDGETVK 619
           +       L  L+        S     +           K   +   +     +    V+
Sbjct: 680 LGFGSDLDLVFLYDHPSEVEASDGKRPLEAGRWFARLAQKVMTLLGAETGAGRLYDIDVR 739

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL-SRVMQSDLNLKTAE 678
            + +      +      R    D          V  +  A +  L    +Q      T  
Sbjct: 740 LRPDGGKGALVSSLASYRDYQRDRAWTWEHQALVRARAVAGDAALCEAFVQVRRETLTRV 799

Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
           +       D             RS          +  L  L  L          +     
Sbjct: 800 RDPALLHEDVRKMRARMRSELDRSDAGRLDLKQGAGGLVDLEFLLQAGVLGQAAEHPAVL 859

Query: 739 L--DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
           L       +D   +          P   A            L   P
Sbjct: 860 LACATPALIDALVQVQWLPAETAAPLHHAHATLVEAGLSCTLDRRP 905


>gi|63099942|gb|AAY32965.1| DszB [Sorangium cellulosum]
 gi|83698587|emb|CAI43933.1| DisB protein [Sorangium cellulosum]
          Length = 6256

 Score = 44.9 bits (104), Expect = 0.082,   Method: Composition-based stats.
 Identities = 72/727 (9%), Positives = 155/727 (21%), Gaps = 23/727 (3%)

Query: 158  IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL--- 214
             I   E +   L A   E+          FL+ +               P   Q+     
Sbjct: 2695 EIAAAEPELVVLSAHTEERLRAHAERLLRFLQGSRPGGLPSPSAPGRRLPEAAQLRAELR 2754

Query: 215  --MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
              +    +   +       I           RL   +       +    +      A   
Sbjct: 2755 DIVARRLDVAPRDVDEDAEICELGLGALDVRRLTEDIERRFGLRVSPEDVTERTTVAGLA 2814

Query: 273  TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM-----YGRSMVI 327
                      +     +  P   L+ L   L   R+  +    +                
Sbjct: 2815 GRLRHLAAPDADRDDSAARPAVRLSDLAYTLRAGRDPRQHRLALHVADLDELIEQLRRYC 2874

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
             +                     + ++  +D A + A     +  ++        D + +
Sbjct: 2875 EEGAADGSRCFAGQASRRAGSSGSRKEAMADEARVRAAIAERDLATLGRLWVAGTDVDWE 2934

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLST------TLHSSILTSLLNAIFKLN 441
                  A R +                      L               TS  +A    +
Sbjct: 2935 PLDARRARRRVPLPTYPFARERYWFSRSGDAFTLGQAGERRLHPLVQANTSTFHAHTYSS 2994

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
                 A  +   L          +  + A     +   +   DI+D+       +  +  
Sbjct: 2995 RLRGDAFYLADHLVHGQKLLPAAAFLEMARAAGEMASGRPVRDILDVVWTAPVVVGAEPR 3054

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTC 560
               +    +  + +    +      I      +              L + D        
Sbjct: 3055 EIEITLRPAAGAIDFAVSSAAERAVISHAQGRMRLDEGDPAEEAAPPLPLDDILSRCSRV 3114

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                      +   L      + L  L     E  + I+   +  +D  T  +    +  
Sbjct: 3115 TGGDACYRRLQQLGLHHGGSMRALHELRRGEGEAIAEIRLPELHHVDFSTFALHPALLDA 3174

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLN----EGVWPKNTAKNPFLSRVMQSDLNLKT 676
             ++ +  L       +  L F    +  L             +  P  +    S + L  
Sbjct: 3175 ALQCTLGLLDDEAARAPYLPFAVGRVTLLRPLPARLFAYATPSSAPPGTNARASHVTLAD 3234

Query: 677  AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                +     DF +   T  +  T + R    P +  + + R            L     
Sbjct: 3235 PAGRVLLEMRDFTVRLATADVAPTPAQRLYFRPGLRPQRVDRPAGARAPQGPVLLLDTDD 3294

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                  R             P+ F            S  +       A  AR  +    +
Sbjct: 3295 VLWTAARARLQAPIGLVLPGPE-FQASSDDRYVIDPSRPEHHRRLLDAFVARHGVPASVL 3353

Query: 797  PHFKKDPDRTDRGTLFH-NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                   DR   G   H + +  L +    +       ++                +   
Sbjct: 3354 YLRSLHDDREAAGDTRHLDAVLHLCRALQERRGERSVRVLYVHPTEGGAVSPRHAALAAF 3413

Query: 856  WRHLFHK 862
             R +  +
Sbjct: 3414 ARSVRRE 3420



 Score = 43.0 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 78/776 (10%), Positives = 171/776 (22%), Gaps = 41/776 (5%)

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                         L  P +  +RL E A+L    R+ +   +     +      I     
Sbjct: 2720 RLLRFLQGSRPGGLPSPSAPGRRLPEAAQLRAELRDIVARRLDVAPRDVDEDAEICELGL 2779

Query: 146  IWLA-KNLADIIDIIETEEKKWEDLHA------------------LKNEKYGMWWLLAAD 186
              L  + L + I+         ED+                       +       +   
Sbjct: 2780 GALDVRRLTEDIERRFGLRVSPEDVTERTTVAGLAGRLRHLAAPDADRDDSAARPAVRLS 2839

Query: 187  FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246
             L    +       +   +  V     L+     +  +G            S  A +   
Sbjct: 2840 DLAYTLRA-GRDPRQHRLALHVADLDELIEQLRRYCEEGAADGSRCFAGQASRRAGSSGS 2898

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
               A      +     +  + T     +     +    +   +                 
Sbjct: 2899 RKEAMADEARVRAAIAERDLATLGRLWVAGTDVDWEPLDARRARRRVPLPTYPFARERYW 2958

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                     +      R   + ++      +   ++ +  +             L+ A  
Sbjct: 2959 FSRSGDAFTLGQAGERRLHPLVQANTSTFHAHTYSSRLRGDAFYLADHLVHGQKLLPAAA 3018

Query: 367  EREEAISIAIA-----LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
              E A +         +R  LD       ++ A+                    SA    
Sbjct: 3019 FLEMARAAGEMASGRPVRDILDVVWTAPVVVGAEPREIEITLRPAAGAIDFAVSSA---- 3074

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            +     S     +          A   L    +                L+ + L    +
Sbjct: 3075 AERAVISHAQGRMRLDEGDPAEEAAPPLPLDDILSRCSRVTGGDACYRRLQQLGLHHGGS 3134

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
               + +L+    + IA  +         S  +     L   L   +              
Sbjct: 3135 MRALHELRRGEGEAIAEIRLPELHHVDFSTFALHPALLDAALQCTLGLLDDEAARAPYLP 3194

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF---EEEGKTLSSLFSKIIETGSCI 598
             +      +                              +  G+ L  +    +   +  
Sbjct: 3195 FAVGRVTLLRPLPARLFAYATPSSAPPGTNARASHVTLADPAGRVLLEMRDFTVRLATAD 3254

Query: 599  KANAIEWIDIITRLIDGETV-KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
             A            +  + V +P   ++    +L      +L   T     L   +    
Sbjct: 3255 VAPTPAQRLYFRPGLRPQRVDRPAGARAPQGPVLLLDTDDVL--WTAARARLQAPIGLVL 3312

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
                   S   +  ++    E +                ++Y RSL ++      +R L 
Sbjct: 3313 PGPEFQASSDDRYVIDPSRPEHHRRLLDAFVARHGVPASVLYLRSLHDDREAAGDTRHLD 3372

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
             +L L        L++R          +  T       R           R    + + +
Sbjct: 3373 AVLHLC-----RALQERRGERSVRVLYVHPTEGGAVSPRHAALAAFARSVRREDPNLLCR 3427

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
             +  P  V   R L    +     D DR D     H    + + +      P+ + 
Sbjct: 3428 TVAVPLDVGPGR-LADALLAECSPDADRADPAAEVHYHEGQRLVRCFEPFQPDASR 3482


>gi|326334231|ref|ZP_08200454.1| putative ATP-dependent DNA helicase (UvrD/REP) [Nocardioidaceae
           bacterium Broad-1]
 gi|325948022|gb|EGD40139.1| putative ATP-dependent DNA helicase (UvrD/REP) [Nocardioidaceae
           bacterium Broad-1]
          Length = 700

 Score = 44.5 bits (103), Expect = 0.084,   Method: Composition-based stats.
 Identities = 49/592 (8%), Positives = 120/592 (20%), Gaps = 70/592 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
               V     T RA  E+R     +           ++       +        Y    P
Sbjct: 70  APQEVLAVTFTTRAAGEMRQRLRAMGAGAV----QARTFHSAALRQLRFFWPKVYGTELP 125

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                ++     LI     +    +                     A++LA  I+  +  
Sbjct: 126 TLTESKI----PLIRAAAQRQRINVDQAQ-----------------ARDLASEIEWSKVS 164

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA--- 219
               +D       +      L    +      + +              +          
Sbjct: 165 NVHPDDYPKSAEARGREVGGLTPSMVGHIYAAYEDVKRTQARMDMEDVLLLTAGLLEHDE 224

Query: 220 --EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                ++       +       P  + L+           +    D       +      
Sbjct: 225 RVAAQVRRQYKWFTVDEFQDVSPLQSALLDLW--LGGRNEICVVGDPAQTIYTFAGADAA 282

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                                        R+  K+    ++    R+   S   +     
Sbjct: 283 YL---------------------------RDFPKKHPGATSVELVRNYRSSPQVVRAANK 315

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITAD 395
            +  T     ++   +     V  +E  +E  EA  +A  +       +   + A++   
Sbjct: 316 ILEGTPSAGVQLQAQRDAGPAVEHVEQPDEVAEAEGVAAEILRLHQSGKPYNEMAILFRI 375

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +   +  LT   I   +                + +    +         ++   L 
Sbjct: 376 NAQSEAYEDALTARRIPYVVRGAARFFDRPEVREAVTRIRGAARGGQG----AVIGDELL 431

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
           +            +       +          L        A   +   +     R + E
Sbjct: 432 ESVHGILAGMGWTSEPPDGRGQTRDRWESWQALIDQARAFAAAGGDLAGLVAELDRRAAE 491

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                          +      K  +  +   + + D T   +   +     E  +   L
Sbjct: 492 QHAPVPS-----GVTLATFHAAKGLEWDSVFLVGLQDGTMPFILRGEEPTPAEIEEERRL 546

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
            +    +    L           +A        +  L    +  P     S 
Sbjct: 547 LYVGLTRARVDLTLSWALARQPGQAARRRPSRFLDPLRPTRSTAPARRPGSG 598


>gi|294631278|ref|ZP_06709838.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
 gi|292834611|gb|EFF92960.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
          Length = 278

 Score = 44.5 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 67/279 (24%), Gaps = 55/279 (19%)

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL---KTAEKYIGQAA 685
            ++    S+ L +  +++ G+ EG+WP    +   L         L    T    + +  
Sbjct: 2   RLMTAHRSKGLQWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEER 61

Query: 686 HDFEMA--NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
             F +A       L+ T      +     SR+L  L V           +R         
Sbjct: 62  RLFYVAVTRARERLVVTAVKAPADDGDQPSRFLTELGV--EPQDVTGRPRRPLSVAALVA 119

Query: 744 KLDYTTKQPHYK----------------------RPKPFPPLEAQPRT------------ 769
           +L  TT  P                         RP        +               
Sbjct: 120 ELRATTVDPAASDALREAAARRLARLAALADDEGRPLVPAAHPDRWWGLAETTASKVPLR 179

Query: 770 -------YSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                   S S + QL N      +  R      +            G + H ++ + + 
Sbjct: 180 DRDQPVVLSGSALDQLANTCALQWFLGR-----EVKADAPASAAQGFGNVVH-VLADEVA 233

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
                    +     + + +    +          +   
Sbjct: 234 SGRTPADLAVLMERLETVWNALAFDAPWKSAQGAGQTRA 272


>gi|149919872|ref|ZP_01908348.1| adventurous gliding motility protein AgmK [Plesiocystis pacifica
           SIR-1]
 gi|149819319|gb|EDM78752.1| adventurous gliding motility protein AgmK [Plesiocystis pacifica
           SIR-1]
          Length = 3612

 Score = 44.5 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 66/678 (9%), Positives = 147/678 (21%), Gaps = 43/678 (6%)

Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160
               +  R  ELA  +     +               +     +A  LA      ++ + 
Sbjct: 154 RASKDADRRFELAEEMATLARERLGSTDRAIEVWRSVVREDGQDARALAN-----LEKLY 208

Query: 161 TEEKKWEDLHALK------NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            E KKW  L  L        E       L  D L   +  + + L            +A 
Sbjct: 209 REGKKWTALVELLKDAFERIEDTADNKQLRIDKLLEITALYRKELRLD------AMALAT 262

Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD----------- 263
           ++   +   +      ++A +  S      L+       + A      +           
Sbjct: 263 LQRILDIDPRHQGSLEVLADTYASSQRWNDLLGVQKRLRDAAKEDGDAEAEAEVLRKVAA 322

Query: 264 ---------CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
                          +   +     +  + +     H Q    + L  L  +    +   
Sbjct: 323 IWVEKLGNPQRALDPLRELLGLIPGDRKARDMMAQIHEQRRDWRALIALRREELQEREGD 382

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
                    + +  +       +      +LEN     +   +   L E ++   EA  I
Sbjct: 383 EALELRLELARLAEEKLGDRREAIAGWNAVLENHGEVDKALAALARLYERESRWAEAAEI 442

Query: 375 AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                   D   +   L+T   ++      +           A +          L +L 
Sbjct: 443 RHRQVAKADSVGRAVKLLTEIGHIYSERLRDQPNAIRVWREIARLVPGHD---KALRTLR 499

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
           +A      +  +  L                ++                 +  L    L 
Sbjct: 500 DAYSSSGMWDELTELYVEQ--GRVSDLVDALQSAADRVSATEDRVDLYRRVAQLCREKLG 557

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
           +                 +       + +          + T      ++       +  
Sbjct: 558 QPERAVKALERTLAIQPNNLIVARELLPIYREQSNWAALMRTINVLLEASESVDDKLELI 617

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           +       +                  +         +E  +    N  +   +    I 
Sbjct: 618 EQLREIAVDKLQSPQLTFQWAARAYVLRPTDEALRGRLEAAAANSDNWDQLTRLFEDRIA 677

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
           G+                 +         L+L  L      + +  +       +     
Sbjct: 678 GQKPASAEATDGESIAAAAVAPADEAEQLLLLEKLAIIARDQLSKPDDAQRYFRRIMELD 737

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL-QRLLVLGGTDFFDNLKK 733
           +  E  +      +        L      R N  P  A+R +  R L     D   +L  
Sbjct: 738 QHNEAAMEALEAIYTSTRRWDDLSEVYRWRLNVAPDDAARLITLRGLARLQEDHLKDLDA 797

Query: 734 RGQCYLDWTRKLDYTTKQ 751
             Q Y           + 
Sbjct: 798 AVQTYDKILELEPEDRRT 815


>gi|1654423|gb|AAB17882.1| transducer HtC protein [Halobacterium salinarum]
          Length = 792

 Score = 44.5 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 94/318 (29%), Gaps = 19/318 (5%)

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
           ++   + E    A  +   +L+  + +  R  EL +L+  +      +         L+ 
Sbjct: 307 RTSSALDELAGVAAAMRDGDLDTTIPDTDRTDELGQLVGAFGEMQTYLTTAASQADALAD 366

Query: 139 PISPANAI--WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
               A+ +   L       +  +   E    DL      +        A+  + AS+   
Sbjct: 367 QNFDADVLDEDLPGAFGASLSQMHRLEALITDLDEA--REDAEQTRKDAEEARAASERLN 424

Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
           ERL    A        A        L +     +   G      A   +M  V       
Sbjct: 425 ERLERRAAEYSDEMAAAAAGDLTRRLDED----VDSDGMQDIAEAFNDMMGDVEATLAQV 480

Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
             +        T + +    +S +   S +           +  D L    ++V  L   
Sbjct: 481 RSIADAVDAASTDVHDAAEIRSASDQVSESVQDISADAEEQR--DRLGTVGDEVHALSAT 538

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
             ++  R      +     T   R  ++ E+ +  +++  +      AD+  E   +   
Sbjct: 539 VEDIAARPTTSPSTVNQAATESERGQELGEDAVAELERIEA-----TADSAVERVTA--- 590

Query: 377 ALRMSLDENKKKSALITA 394
            L  ++D     + +IT 
Sbjct: 591 -LEEAVDAIGHVTGVITD 607


>gi|296269401|ref|YP_003652033.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
 gi|296092188|gb|ADG88140.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
          Length = 1089

 Score = 44.5 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 55/608 (9%), Positives = 133/608 (21%), Gaps = 58/608 (9%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
            L   +        + P           T+RA +E+R     +   ++   P +       
Sbjct: 527  LTHRIAHLVTGRGVPPE---QCLAITFTRRAAEEMRERLTALVPDQA---PRVTVAT--- 577

Query: 86   EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
                   +L   +    +S    + + AR + +      D                    
Sbjct: 578  FHSLGLQILREQHERAGLSPSFGIADHARQLAVATEVTGDE------------------- 618

Query: 146  IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
                K    ++  +    +  E        +   +       L+       + LV+ +  
Sbjct: 619  ----KEARRLLAALSRHRRTGE-----GGPEQAEFAERYGKALR------GQDLVDFDDL 663

Query: 206  SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
              +   +     E     +     I +           RL+  +A  P    +    D  
Sbjct: 664  IELPVAMLEADPELAAAYRDRFRWISVDEYQDVDERQYRLLRLLA--PPDGNIAAIGDPD 721

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQ-YSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +             +   +   Q     +    +      V    ++      R 
Sbjct: 722  QAIYRFRGADVGFFLRFQEDFPGARTVQLTRNYRSAATIVTGALQVIAPASLVPGRVLRP 781

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
            +                    E     I++     +    D+ R ++             
Sbjct: 782  VGAHGDARIGLHEAADEQAEAEFVARTIEQMIGGASFHALDSGRVDSDGAQGL------- 834

Query: 385  NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL---TSLLNAIFKLN 441
                 A++      AR V   LTR G+     +   L+       L    +  +      
Sbjct: 835  GFSDFAVLYRTDRQARAVMDALTRAGLPFQKRSHDRLADRPGVEPLLAELAYADPAAGGA 894

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
                 +                 +      E    +     +  ++L   + +R     +
Sbjct: 895  SPDGASPDGAARPVLDRLRRAAQAVLDRTPEQERDQAAAEIHSAVELLRPLAERCGEDLD 954

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                        +     A  +    L     L             L            L
Sbjct: 955  RFRTELALGVEVDTWDPRADRISLLTLHAAKGLEFPVVFVVGCEDGLLPLRQPGTAPEDL 1014

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI--EWIDIITRLIDGETVK 619
                + E R+L  +      + L   ++        ++         D+   + +     
Sbjct: 1015 DEEQVREERRLLFVGMTRAQRHLYLSYAMQRTRHGAVRKTGRSPFLADLGRAVYERIGEP 1074

Query: 620  PKIEKSST 627
             +  +   
Sbjct: 1075 VRRRRKPR 1082


>gi|15790495|ref|NP_280319.1| DNA helicase [Halobacterium sp. NRC-1]
 gi|10580995|gb|AAG19799.1| DNA helicase [Halobacterium sp. NRC-1]
          Length = 821

 Score = 44.5 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 63/217 (29%), Gaps = 26/217 (11%)

Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
           D T     Y        +         ++I+  +  P   Y  ++  L      K     
Sbjct: 7   DATEDGAGYATAASSWVVVEPEFVVDVTDIRSFVQCPRLYYLNKLSGL----PLKY---P 59

Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
             +GT+ H +  +L++ R      ++   + Q +D    +  L               + 
Sbjct: 60  VTKGTIVHEVFGDLLRGR------DLEASVAQRVDEAGLELGLLGRSRAEVEADVRDNAS 113

Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925
           +     ++ + + E       ++  + S    + G  D I   + G     + KTG N  
Sbjct: 114 AIEGWLQQGRLTDED---EWRSEYTLVSERFGIKGRCDAI---RRGMP--VELKTGKN-T 164

Query: 926 KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962
               +     Q +  A  L               L Y
Sbjct: 165 NREPRFHDKVQAACYALMLDEHGV----PADTGTLLY 197


>gi|134295236|ref|YP_001118971.1| exodeoxyribonuclease V subunit beta [Burkholderia vietnamiensis G4]
 gi|134138393|gb|ABO54136.1| exodeoxyribonuclease V, beta subunit [Burkholderia vietnamiensis G4]
          Length = 1234

 Score = 44.5 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 87/895 (9%), Positives = 199/895 (22%), Gaps = 82/895 (9%)

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT---------KGPIIIAG 234
                +          L E   +  V     L+    + L                 +I  
Sbjct: 339  WLALVADWLDSAPAELAERKRTRRVVSFDDLLANLYQALQAHPWLGETLRARYPAALIDE 398

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---TH 291
               + P    +   +        +    D       +      +     +  +       
Sbjct: 399  FQDTDPLQFAIFDRIFAPRG--PLFLVGDPKQAIYSFRAADLHTYLAARARASACYTLAV 456

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP-PDTSDMRNTDILENKIP 350
             Q S   ++D  +       R   +    Y      ++   P  D +D            
Sbjct: 457  NQRSTPAIVDACNSFFMSNPRAFVLDGLDYYAVRAGTRVRAPFIDETDPGPAGDFRIWAL 516

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---------KSALITADRNLARR 401
                        +A   +  A  IA  +R + D + +           A++         
Sbjct: 517  PGGDGTLHKREAQAQAAQACAAEIARLMRGARDGHARLGDTPLSPGDIAVLVQTHRQGSL 576

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            VK  L  +GI     A   + +T  +  L  +L AI    D   +   +           
Sbjct: 577  VKRVLATWGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLRRLRAALAADWFGLDADA 636

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN-------THVPHWQSRLSE 514
             +     +           ++   ++  S        +            +   +  ++ 
Sbjct: 637  LWRMEQGDGDASRDAADGADAMSWVERFSRYRLLWRERGFAVMWRTFTRELRIAERLMAG 696

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             D E  V  ++H+ +      + +     T   L+              +  D +     
Sbjct: 697  ADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGGGEEAQLRLESDRNLVQIV 756

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT----RLIDGETVKPKIEKSSTLFI 630
               + +G   + +F   +  G   +       D                   E ++    
Sbjct: 757  TVHKSKGLEYAVVFCPFLNDGGLREPPTSALPDAREYHDDAGDAVLHYGCDDEAAAHAAR 816

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
                E        + +            A     SR  +            G        
Sbjct: 817  QVLREQAAERARLVYVALTRAVYRCYLVAGPYLSSRSTREARRSVLNWLVAGAGRSFDAW 876

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
             +         +  +       S     +          +   +       TR L    +
Sbjct: 877  LDEPPDEAELGAAWQALAGGPLSVAPLPVPARRERVAAGHDDSQALAARRATRMLRDAWR 936

Query: 751  QPH--------YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
                        +       +           +  +  D   V A  ++           
Sbjct: 937  IASFSSLTASMAREEAGVASVPDDELRPDHDALAAVSADLALVGADTVVSAPPDDDILTF 996

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEINHLMK-------------------QIIDSHF 843
            P     G   H +       + +         +                    +++D   
Sbjct: 997  PRGAAAGECLHRLFELSRFTQPDSWLQAALGALHDRPVEAEPDLAVRLPAMMVRLVDDVV 1056

Query: 844  EKENLPPHIDIIW--RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LT 899
              E +P              ++   F     ++ +    +  +    +A+E+  +   + 
Sbjct: 1057 HTELVPGMRLADLDPARRLDEMGFLFPAPSLELGALRRLLVAHGYPDVALEAGALAGFIK 1116

Query: 900  GFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDPQLSLEAAALKAGS 948
            GF D I     G   I D+K+                   A      Q  L   AL    
Sbjct: 1117 GFIDMIVEH-DGRFWIVDWKSNHLGNTPDAYGPRALDAAMADHAYHLQALLYTVALHRYL 1175

Query: 949  FSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
             +++        +A   Y+ ++                A   S + +  L  ++ 
Sbjct: 1176 RARLPDYDYDTHMAGYLYLFVRGVRPGWRSDGMPAGVHAGRPSRELVDALDRMME 1230


>gi|120609346|ref|YP_969024.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
 gi|120587810|gb|ABM31250.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
          Length = 665

 Score = 44.5 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 54/645 (8%), Positives = 168/645 (26%), Gaps = 57/645 (8%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V +   +   +  LR          +     I ++  +      A  L    L      
Sbjct: 60  RVLMLAYSDAGLAALRDRLGRYMPADA-REVRIMTVEQLCAGLLKAQGLPVNAL---TEP 115

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII-DIIETEEK 164
           ++R L + +       +L                   A   + A     ++   I  E  
Sbjct: 116 LERQLLIRQAHAALLQELRHEAPPEAAGFLARELDVQAFTGFEALAKQRLLHRDIAREGT 175

Query: 165 KWEDL-HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-L 222
                      +      L   + L+       +     + +  +  Q+  +     +  
Sbjct: 176 HAAAYCRDHALDYGLYLLLGRYERLRRGPDDEPQFYAPGDCTYEIARQLGELDFGDPYPW 235

Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
           ++G    ++         A   ++  +    NG              ++    + + +I 
Sbjct: 236 LEGRYDAVLFDELQDLDEAAMLVLRHLVAGGNG--------------VFVGAGDFNQHIL 281

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
               +   +    + + L       E  + L   +   +G+++    + L          
Sbjct: 282 PGAFSVFGNGLQRIRQEL------PEPPEVLTLNTTYRFGKAICEGLNPL--------FG 327

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---SALITADRNLA 399
              E   P     F  +A    ++   + ++I   ++ +            ++      +
Sbjct: 328 VEFETHYPTKTARFERLAYDSDEDCARQLLAIHQRVQGAPPPANGAAPCLTVVLRSPEDS 387

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
             ++      G++               +++ +L  A+    D + +   +         
Sbjct: 388 VLLEWRFAHEGVHYACKGLKRFYQRPAIALVLALFRALPGCGDQVRLTQGILS------- 440

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                  A + L     RG++   D++      L  +A            +       + 
Sbjct: 441 ------SALDGLMRYVRRGSRPDADVLANGLFDLQALAQHSTAEVDTRAVAAELVHQPDR 494

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
               +          V     +        +                     +      +
Sbjct: 495 MRDFLLRASFDPNAPVASAACEAWLALPPEVCADAGRLCDHPLLHRFFAEAPISPHEHRQ 554

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
              +L +L             +  E++  +  +++    + +  ++ +L +L     +  
Sbjct: 555 CLDSLRALSRICRG------LSVDEFLGQLALMVESGIRQHRQNEAPSLQLLTVERCKGH 608

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
            ++ + +  +  G +P+  A++          + L  A +++   
Sbjct: 609 EYEYVAVPLVERGRFPRAAARHEAYRERNMLYVALTRASRHLWLL 653


>gi|194674417|ref|XP_001790601.1| PREDICTED: spindle assembly associated Sfi1 homolog isoform 1 [Bos
           taurus]
 gi|297484970|ref|XP_002694677.1| PREDICTED: KIAA0542 protein-like [Bos taurus]
 gi|296478392|gb|DAA20507.1| KIAA0542 protein-like [Bos taurus]
          Length = 1211

 Score = 44.5 bits (103), Expect = 0.096,   Method: Composition-based stats.
 Identities = 50/618 (8%), Positives = 136/618 (22%), Gaps = 15/618 (2%)

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
           +              S   Q         L ++RE  K +  V++    +     +++L 
Sbjct: 238 LGRALQATAVKRWAQSLQLQAWSRWQEQLLFVQRERWKTVSAVTHLQRRQQWRALRAWLE 297

Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393
                +R    L N++    +C + + +  +   R  A   ++    +  E   +  L+ 
Sbjct: 298 YLQ--LRREKRLRNQMAERVQCATLLQMHFSAWRRAWARRESLHAHRARVEGLARRTLLR 355

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                       L         +AG      L   +L  + N      +       +   
Sbjct: 356 RALTHWEHYM-LLCAEDAERWKAAGEHYRRGLL--LLHRVWNLWQSRLEQREEREQLPFL 412

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            A +      L R    L   + +  ++   +         + A                
Sbjct: 413 RAAWDHGRITLLRKCFQLWSQSTQKRRSQQLLQARADGHFQQRALPAAFQAWRRLWRWRQ 472

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTN-----KNSTCGNLSISDWTKLTVTCLQNVCLDE 568
           ++    A     H       +           +             +  +         +
Sbjct: 473 QQRALEARAACFHREVLEKQVFAIWCQKMSQHREHRLAERMAVLHAEQHLLQKSWSLWRQ 532

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                 L  ++     +      +    C+       +                      
Sbjct: 533 QAAAHRLEQQQHALACAHHHLGRLRKAFCVWREGSRGLRTERTGTMRAARFHAAWLLRRA 592

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
           +        L + +   L   +         +      V QS +     E    ++ H  
Sbjct: 593 WTRWRERRALRSAEWRKLAQADLHHQHSLLHRALQTWGVYQSRVRSVLQEAAARESRHKR 652

Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
            +     H     ++ + +     SR          +      ++     + +  + D  
Sbjct: 653 RLLRHVLHRWRENAMAQADEANKMSRAAAHYRRTLCSKVLLEWREAASVEVYYREQADGA 712

Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
            ++      +       +      S              R   +   +           +
Sbjct: 713 VREAQLVLSRGRLRTWFRLWR-DRSRRAAQQRVQMERAVRHCCR-KLLQEALARWKAHHQ 770

Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK-ENLPPHIDIIWRHLFHKISHSF 867
           G +   +      +   +          Q      ++          +W   F   + ++
Sbjct: 771 GCVRKRLRQRQAARLRAQTL--SRAYFHQWRRQLLDRRHEQQRTAQALWFWAFSLQAKAW 828

Query: 868 LEHEEKIQSSIEKIFVNI 885
                 +Q +  K     
Sbjct: 829 AAWRGFVQEARRKKAREE 846



 Score = 41.8 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 51/617 (8%), Positives = 123/617 (19%), Gaps = 31/617 (5%)

Query: 271 WNTITEKSTNITSSNTTYSTHPQYS-----LAKLLDFLDIKREDVKRLGNVSNEMYG-RS 324
           W               +  TH Q       L   L++L ++RE   R             
Sbjct: 262 WQEQLLFVQRERWKTVSAVTHLQRRQQWRALRAWLEYLQLRREKRLRNQMAERVQCATLL 321

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
            +   ++                     ++     AL   ++        A   + + + 
Sbjct: 322 QMHFSAWRRAWARRESLHAHRARVEGLARRTLLRRALTHWEHYMLLCAEDAERWKAAGEH 381

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
            ++   L+    NL +    +         + A          ++L        +     
Sbjct: 382 YRRGLLLLHRVWNLWQSRLEQREEREQLPFLRAAW---DHGRITLLRKCFQLWSQSTQKR 438

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
                    L +      +  RA  A      R  +       L++              
Sbjct: 439 R-----SQQLLQARADGHFQQRALPAAFQAWRRLWRWRQQQRALEARAACFHREVLEKQV 493

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
              W  ++S+  +         +L     L+    +           +  +  + C  + 
Sbjct: 494 FAIWCQKMSQHREHRLAE-RMAVLHAEQHLLQKSWSLWRQQAAAHRLEQQQHALACAHHH 552

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                +          G       +               W     R         K+ +
Sbjct: 553 LGRLRKAFCVWREGSRGLRTERTGTMRAARFHAAWLLRRAWTRWRERRALRSAEWRKLAQ 612

Query: 625 SSTLFILGTLESRLLNF--------DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
           +        L   L  +          L      E    +   ++        +      
Sbjct: 613 ADLHHQHSLLHRALQTWGVYQSRVRSVLQEAAARESRHKRRLLRHVLHRWRENAMAQADE 672

Query: 677 AEKYIGQAAHDFEMANG--------TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
           A K    AAH                  +      + +     A   L R  +      +
Sbjct: 673 ANKMSRAAAHYRRTLCSKVLLEWREAASVEVYYREQADGAVREAQLVLSRGRLRTWFRLW 732

Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
            +  +R         +      +   +          Q         +Q         +R
Sbjct: 733 RDRSRRAAQQRVQMERAVRHCCRKLLQEALARWKAHHQGCVRKRLRQRQAARLRAQTLSR 792

Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
                       +  ++             L  K        +    ++        +  
Sbjct: 793 AYFHQWRRQLLDRRHEQQRTAQALWFWAFSLQAKAWAAWRGFVQEARRKKAREEQAVQVY 852

Query: 849 PPHIDIIWRHLFHKISH 865
              +         + + 
Sbjct: 853 QLQLLREGVERLLRFAA 869


>gi|262193952|ref|YP_003265161.1| hypothetical protein Hoch_0636 [Haliangium ochraceum DSM 14365]
 gi|262077299|gb|ACY13268.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
          Length = 387

 Score = 44.5 bits (103), Expect = 0.100,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 84/262 (32%), Gaps = 29/262 (11%)

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI-- 824
                SFS + +    P +     + K +              G+  H  +  L+++ +  
Sbjct: 1    MTRLSFSRLSRYEACPLSYKLHYLDKHEAGDSV-----PLAFGSAVHAALEHLVREHLAE 55

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             +  P        +  + + + +L     +        + H F+  E+ +   ++ + V 
Sbjct: 56   ERVGPLGAERAASLWQTAWTESDL---AGLSLFREGLALVHRFVR-EQGVLDHLDVLAVE 111

Query: 885  IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944
               ++ +   G  + G+ DR+D +    VD+ DYKT               Q+SL   A 
Sbjct: 112  QEFRITV--GGFEVLGYLDRVDRVDDETVDVVDYKTNRQLFTRDELDG-SLQMSLYQLAA 168

Query: 945  KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004
            +    S     K   L +  L+   +       +          ++ K  +  +    + 
Sbjct: 169  Q----SLWPWAKKVRLTFWMLRHGVQQRTERTSEDL--------EATKRYVATLGSAIDR 216

Query: 1005 EQPFISHLRLSEKSNIQSEYDH 1026
               F + L     +    ++  
Sbjct: 217  ATEFPARLN---SNCTWCDHKQ 235


>gi|256378068|ref|YP_003101728.1| acyl transferase [Actinosynnema mirum DSM 43827]
 gi|255922371|gb|ACU37882.1| Acyl transferase [Actinosynnema mirum DSM 43827]
          Length = 5526

 Score = 44.5 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 79/827 (9%), Positives = 170/827 (20%), Gaps = 29/827 (3%)

Query: 11   IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPT-KRAIQELRSEFIEITG 69
            +    P    ++   L        R      L  A   + +    RA  ELR+  +   G
Sbjct: 4679 LPQGVPAEEWLVHPALLEAAALLGRDPSPELLAHAWRDVVLHHPGRAPGELRARVLRSPG 4738

Query: 70   KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129
                         D+ + +      +        +  +R   L R +             
Sbjct: 4739 GTRL---------DLADAEGAPVASIGSVEPRAAAEAERRGVLFREVWE------PCPTG 4783

Query: 130  LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
                 PL L     +   +A  +      IE    +   L  L  +      +   D + 
Sbjct: 4784 AAGGDPLVLDRRGRSGADVAGQVERARAEIEDALAEHPALVVLTRDAVA---VRGQDRVD 4840

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--IIIAGSTGSIPATARLMS 247
                     +  L    P    +       +     + G   + + G T   P       
Sbjct: 4841 PVGAALRGAVGALQVRWPGRIVLVDAERAEDVAAAVSTGREQVAVRGGTAFAPRLVAEPR 4900

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
                 P+G   L       P  +       +                         D   
Sbjct: 4901 PALEIPDGPWRLEVG----PDGVVAAPRPGTALEPHEVRVAVRATGIGFRDARAPHDAGA 4956

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                 L  V  E+      ++        +D            ++    +     EA + 
Sbjct: 4957 PLGSDLAGVVAEVGADVDGLAVGDRVFGLADGPTGPEAVVDQRSLVPVPAWWTFAEAASV 5016

Query: 368  REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
                ++   ALR  ++    +  L+           + L         +   P       
Sbjct: 5017 PSAFLTAHYALRHVVNLQPGQRVLVHEAAGGVGAAVVLLALATGAEVWATARPDGRHAPG 5076

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
                 + + +            V        F                  G         
Sbjct: 5077 LPAERVASCLDLGFRERFPQVDVVVNALPEEFAAAS-LELLRPGGYFVELGGAPPDLAGF 5135

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                       +     V    SRL  E  E        + +    L             
Sbjct: 5136 GAVRHRVLDLAEVTPDRVQRMLSRLVAEGVEPLPATAWDVRRAPEALGQAGKAVLVAPRA 5195

Query: 548  LSISDWTKLTVTCLQNVCL--DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
             + +            +            L    +   +++L  ++      +       
Sbjct: 5196 DAGAVLVVGGGPVGTALARHLAGRGWRVVLAGRRDACAVAALREELGAAVVDLDLGDGAA 5255

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
            +  +        V    ++   +F  G         D  +        W          +
Sbjct: 5256 VRRVLAEHAVTGVVHVAQEPGEVF-TGAWRLHEAAGDLDLFVLCGSARWALGGDVAEAAA 5314

Query: 666  RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
                + + L+     +   A  +    G   +  TR LR +    +  R +     +   
Sbjct: 5315 WAFLAGIALERTRSGLVGRALAWGPLAGEPAVSGTRPLRVDEALRLFDRAVDGPEPVVLP 5374

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
              +   +           +                  L  + R      ++ L+     V
Sbjct: 5375 MRWSPDEAPATLPRQRVERGSAVAAALDALAALDGVDLAEEARGALVERLRALLPGGEPV 5434

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
                            +P   + GT    +    + +          
Sbjct: 5435 AVGAAPAEPSPAEPDPEPVALEPGTPEPAVAEPAVAELAGPEPTAPE 5481


>gi|53136500|emb|CAG32579.1| hypothetical protein RCJMB04_29p4 [Gallus gallus]
          Length = 716

 Score = 44.5 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 40/492 (8%), Positives = 110/492 (22%), Gaps = 33/492 (6%)

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                          +     +     +   R       +   G +     +        
Sbjct: 31  ALRALPITQHHRLWPLYLSFVRQHPLPETAVRVYRRYLKLCPEGAEQYLRSVGRLDEAAV 90

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
           R+A   N+      + +   +  +    L+      I    +         G    +D  
Sbjct: 91  RMAALVNDERFVSAEGKSKYQLWQELCELLSQHPSAI---RSVDAESIIRGGLRRFTDQL 147

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                 +    +               +                 A+A   +++     +
Sbjct: 148 GRLWCAMAEYYIRSGHFEKVFDSYAHFEESLIAARMDAAADVGRSADAEVDVELRLARFE 207

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
               +  +  +S L           +   + L    E        +        ++    
Sbjct: 208 QLMERRPLLLNSVLLRQNPHNVHEWH-KRVQLYRGREQQIIHTYTEAVRTVDPFKATGRP 266

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIY----TRSLRENNIPTIAS-RWLQRLLVLGGTDFFD 729
            +      +   D    +  R L+      R  R  ++  +   R    L    G     
Sbjct: 267 HSLWVAFARFYEDNGQLDDARSLLLKATRVRFRRVEDLAAVWCERGELELRHNQGGAALR 326

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK----------QLI 779
            L++            D +    +                 S    +           L 
Sbjct: 327 VLREATALPARRAEYFDTSEPVQNRLYKSLRVWAMLADLEESVGTFQSTKAVYERILDLR 386

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF----------HNIITELIKKRINKNTP 829
                +     + L+   +F++     +RG             H  +++ + +   +   
Sbjct: 387 IATPQIVINYGMFLEERGYFEESFKAYERGVALFRWPNVADVWHTYLSKFVGRYGGRKLE 446

Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE-HEEKIQSSI---EKIFVNI 885
               L +Q +D    K      +        + ++   +  +E   ++ +    +    +
Sbjct: 447 RARDLFEQALDGCPPKYAKSIFLQYAQLEEHYGMARRAMAVYERATRAVLPSERRAVFEV 506

Query: 886 PAKMAIESIGIH 897
               A E  G+ 
Sbjct: 507 SIARAAELYGVT 518


>gi|221633123|ref|YP_002522348.1| acetyl-coenzyme A synthetase [Thermomicrobium roseum DSM 5159]
 gi|221155985|gb|ACM05112.1| acetyl-coenzyme A synthetase [Thermomicrobium roseum DSM 5159]
          Length = 654

 Score = 44.5 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 56/532 (10%), Positives = 133/532 (25%), Gaps = 21/532 (3%)

Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
               FL +      + L +  A+ P  Y  A +R      +       I+  S G   AT
Sbjct: 17  RLQRFLALLGFRSVDELRQHAANDPAWYWDAALRDLDIRWLSPPTQ--ILDLSQGLPWAT 74

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
                 V N+   A+   G +   P  +W     ++  ++  +   +      LA  L  
Sbjct: 75  F-FPDAVYNYVADALSRWGTENR-PALVWEGDDGRTVVLSYRDIATAV---PRLAAGLAA 129

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
           L ++  D   L            +++  +L      + +    E     ++   + V + 
Sbjct: 130 LGVQPGDRVGLFLPMIPETA-LAMLALGWLGAIVVPVFSGFGPEAVATRLRDAEATVLIT 188

Query: 363 E-ADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAGI 419
             A   R + + +      ++ E  +     ++    +           +    D S+G+
Sbjct: 189 ADAFPRRGQLVHLKEIADRAVAECPRIQHVVVVRRSGSPVSWTPTRDRWWDDLADSSSGM 248

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
                     L +   A       +  +     P         +  +A + L        
Sbjct: 249 ----------LPATATAANTPFMLIYTSGTTGRPKGTVHVQAGFPLKAAHDLAFCFDVQP 298

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
            +    +     ++     Q                D  +   L   +      ++    
Sbjct: 299 LDRVFWLTDIGWMMGPWLIQGTLLLGATVVLYEGTPDWPVPDRLWRLVATHGITVLGLTP 358

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
                      +   +  ++ L+          P+ W+       +     I  TG    
Sbjct: 359 TVVRALMARGAAPTAQHDLSSLRAFGSTGEPWNPSPWWWLFETVGNRQHPIINYTGGTEI 418

Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
              I     I   +      P    ++ +        R    + +I              
Sbjct: 419 GGGILACTTIEPQVPCSFTGPVPGMAADVVDENGQPVRGRVGELVIRQPWVGMTRGFWRD 478

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
              +L+       +L     +       + +   +   +     R       
Sbjct: 479 PERYLATYWSRWPDLWVHGDWALIDDGYWFILGRSDDTLKIAGKRLGPAEVE 530


>gi|254391733|ref|ZP_05006930.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294813422|ref|ZP_06772065.1| Hypothetical protein SCLAV_2592 [Streptomyces clavuligerus ATCC
           27064]
 gi|326441867|ref|ZP_08216601.1| hypothetical protein SclaA2_12424 [Streptomyces clavuligerus ATCC
           27064]
 gi|197705417|gb|EDY51229.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294326021|gb|EFG07664.1| Hypothetical protein SCLAV_2592 [Streptomyces clavuligerus ATCC
           27064]
          Length = 653

 Score = 44.5 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 49/535 (9%), Positives = 123/535 (22%), Gaps = 23/535 (4%)

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
                      + S                    D++ +   +       +A   R +++
Sbjct: 97  HRSCGDGGRLEELSAEPEQREGRLDPGPSDHYLLDLSNVSHADYFGAQRLLASY-RSTVE 155

Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
           E+  + A++  D      +   L      + +  G P      +++L   L         
Sbjct: 156 ESSARMAVVLPDG-----LDHLLDTDLRPLVVHLGRP----RGAAVLRLYLRLDGIPFTR 206

Query: 444 MAI-ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
                  ++H L      E             + R   +           +   A +   
Sbjct: 207 EETDEEALRHFLVTAPMRELAKLADLIRRARDSGRHGNHFSAWCAEAMAAVTDWAGEAAR 266

Query: 503 T---HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
               H    +  +       +    D +      L+    +       L+ SD  +   +
Sbjct: 267 QVSSHRTVQERAMLLTAAMFSGASADAVFHGSDCLLRTLDHAGDEMPRLAQSDLGEQLES 326

Query: 560 CLQNVCLDEHRKLPNLWFEEEGK-TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                  +       L ++   +      F  + +        A    D+          
Sbjct: 327 LKIRRDTEGRIGFERLAYDSAIRTHFWKNFPDLRDGLRDWVEYAARLPDLTRDDRMNLVE 386

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
           +   +              L+   T   G ++      +T +              +T E
Sbjct: 387 RFAEQALGAGR--PDHLWSLVERWTRPGGRMSLNAEAASTLERGLAHERYGGRFRAQTYE 444

Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
              G+ A      +     + T   R+    T  ++ L RL  L      + + +     
Sbjct: 445 WAAGRTA-----LSADLVRVLTEVCRQVMASTHPAQALVRLHHLALRPGGEEIGEARTAL 499

Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAVYARRILKLDFIP 797
           L+  R       +   +   P               ++ L +           L    + 
Sbjct: 500 LELARGSRRLRARLTGRLLSPESSNGHANLELYLDLVEPLGLRAREPWPQLAELWTAVMD 559

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
               +      G     + T+  +        +       +++  +         
Sbjct: 560 EGPVETWSPTVGRWLSALRTDEGRHHALGVLLDAASGRNDVLNRLYAITCDWAAT 614


>gi|307719090|ref|YP_003874622.1| hypothetical protein STHERM_c14090 [Spirochaeta thermophila DSM
           6192]
 gi|306532815|gb|ADN02349.1| hypothetical protein STHERM_c14090 [Spirochaeta thermophila DSM
           6192]
          Length = 1008

 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 45/433 (10%), Positives = 105/433 (24%), Gaps = 72/433 (16%)

Query: 47  VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE--KFTADLLLSYNLNPPVS 104
           +T+   T++A +E+R     + G +      + +      E                 + 
Sbjct: 509 ITVLAFTRKAAEEIRERLRGVAGGEGVW---VGTFHAWAYECLVRFHREAGYGAPPVVLE 565

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
             +R +               + +                           ++ ++ E +
Sbjct: 566 GDERRVVWEEACRRVGAGRVGLGR---------------------------VERLKREGR 598

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA----- 219
           + E+         G  W           + +   L E  A       +   R        
Sbjct: 599 RPEE----VEGVVGEVW-----------RVYEGLLAERGACDVDDLLLQAARLIEGVEGV 643

Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
              ++G    +++  +     A   L+  +A    G +V    D       +   +    
Sbjct: 644 REWVRGQCRWVLVDEAQDLNAAQYGLLVRMAPTGEG-VVCMIGDPAQAIYGFRGASAGWM 702

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD- 338
                           + +L +      E ++    V  E  GR M            + 
Sbjct: 703 GRFVEEYG------ARVVRLEESFRCPAEVLEVAEGVLGEGVGRRMRARGGGGRVSAWEC 756

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
                  E     I++          D+E  E                ++  ++     +
Sbjct: 757 ASPESEAEFIARQIEQRLGGTTFFSFDSEVVE---------DEGGVAPEEIGVLCRTHLV 807

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
              ++      GI      G  +  +  +     L   + +   +   A  V   +A+  
Sbjct: 808 MDVLEEAFRNHGIPYRRV-GEGVRLSRGAR--ERLARVMGEGGVWEQAAGEVGGGVAREW 864

Query: 459 FPEKYLSRAKNAL 471
             E    R    L
Sbjct: 865 GLEGEDLRVWEEL 877


>gi|298345209|ref|YP_003717896.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
 gi|304390769|ref|ZP_07372721.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298235270|gb|ADI66402.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
 gi|304325652|gb|EFL92898.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 519

 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 47/390 (12%), Positives = 110/390 (28%), Gaps = 52/390 (13%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            +    R   +NP    +V     T++A  E+++   E  G         ++       +
Sbjct: 55  RIAYGVRSGQVNPE---NVLALTFTQKAAAEMKTRL-EGLGVGQVWA---RTFHSAALAQ 107

Query: 89  FTADLL-LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE-SPLSLPISPANAI 146
                  +     P V+ ++  L  A  + +  N     ++ L  E     + +   +  
Sbjct: 108 VRHFWPQVMGGTVPTVTGLKATLVTAAGVRLGLNLGKAQVRALAGEIEWAKVSLIDPSHY 167

Query: 147 WLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
            LA   A         +   E +  L    +         DF  I        L+     
Sbjct: 168 ALAARAAG---REAVADLSTERVAELLDAYEDAKIAAEMLDFEDIL-------LLCAGMM 217

Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                    +R +            ++       P    L+ +         V+   D  
Sbjct: 218 DEREDVARTIRNQ--------YRYFVVDEYQDVSPLQNYLLMSWLGRRRDLAVV--GDAA 267

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +   T +     +      T+P+  + +L+       +                 
Sbjct: 268 QTIYSFAGATPEYLTEFT-----QTYPEAKVVELIRDYRSTPQI--------------VN 308

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
           + ++       +D         ++ + ++   +V+   A ++  EA  IA  ++  L E 
Sbjct: 309 LANQVLAQAKGTDG-RPLGGTVRLVSQRETGPEVSWFVAPDDETEAKEIARRIQDLLAEG 367

Query: 385 -NKKKSALITADRNLARRVKLELTRFGINI 413
            + ++ A++      A    + L    I  
Sbjct: 368 LSPRQIAVLFRTNAQAALFAVALGAKRIPF 397


>gi|296233842|ref|XP_002807886.1| PREDICTED: LOW QUALITY PROTEIN: spectrin beta chain, brain 3-like
            [Callithrix jacchus]
          Length = 2562

 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 55/588 (9%), Positives = 134/588 (22%), Gaps = 68/588 (11%)

Query: 152  LADIIDIIETEEKKWED----LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            LA++ +       + E        L+  +    W    + L  A+           A   
Sbjct: 627  LAELQEQAARRRAELEASRSLWALLQELEEAESWARDKERLLEAAGGGGAAGSAGGAHDL 686

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                  L + +      G +  ++           A   +         +V         
Sbjct: 687  SSTARLLAQHKILQGELGGRRALLQQALRCGEELAAAGGAVGPGAETMQLVGLAERAASA 746

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYS------LAKLLDFLDIKREDVKRLGNVSNEMY 321
               W  + E +              Q+       L  L D   +           S+   
Sbjct: 747  RRRWQRLEEAAARRERRLQEARALHQFGADLDGLLDWLRDAYRLAAAGDFGHDEASSRRL 806

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----DVALIEADNEREEAISIAI 376
             R        +      +         +              V ++EA+    E   +A 
Sbjct: 807  ARQHRALTGEVEAHRGPVSGLRRQLASLGGASGAGPLVVALQVRVVEAEQXVAEVTEVAA 866

Query: 377  ALRMSLD--------------------------------ENKKKSALITADRNLARRVKL 404
              R  L                                 ++     ++        +   
Sbjct: 867  LRRQWLRDALAVYRMFGEVHACELWIGEKEQWLLSMRVPDSLDDVEVVQHRFESLDQEMN 926

Query: 405  ELTRFGINIDIS------AGIPLSTT------LHSSILTSLLNAIFKLNDFMAIATLVKH 452
             L    ++++ +       G P S          +S    ++  + +  + M+   LV++
Sbjct: 927  SLMGRVLDVNQTVQELVEGGHPSSDEVRSCQDHLNSRWNRIVELVEQRKEEMSAVLLVEN 986

Query: 453  PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
             + +       +   + A+E     G    + +  L++ +      Q          +  
Sbjct: 987  HVLEVAEVRAQVREKRRAVESAPRAGGALQWRLSGLEAALQALEPRQAALLEEAALLAAR 1046

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTN-----KNSTCGNLSISDWTKLTVTCLQNVCLD 567
                        + +      L +           +      + D        ++     
Sbjct: 1047 FPTQAARLHQGAEELGAEWGALASAAQACGEAVAAAGRLQRFLHDLDAFLDWLVRAQEAA 1106

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
               + P     EE   L +  + + E     + +    +     L+  +      E    
Sbjct: 1107 GGSEGPLPNSLEEADALLARHAALKEEVDQREEDYARIVAASEALLASDG----AELGPG 1162

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
            L +   L    L +  L+                    R ++  L + 
Sbjct: 1163 LALDEWLPHLELGWHKLLGLWEARREALVQAHIYQLFLRDLRQALAVL 1210



 Score = 39.5 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 80/796 (10%), Positives = 192/796 (24%), Gaps = 24/796 (3%)

Query: 92   DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA-- 149
            D+    +L    S +++L  +   +  W  ++ ++                      A  
Sbjct: 1456 DVDPGGDLATVNSQLKKLQSMESQVEEWYREVGELQAQTAALPLEPASKELVGERQNAVG 1515

Query: 150  KNLADIIDIIETEEKKWEDLHAL--KNEKYGMWWLLAADFLKIASKYWT--ERLVELNAS 205
            + L  +++ ++   +       L               D L+   ++    + L     +
Sbjct: 1516 ERLVRLLEPLQERRRLLLASKELHQVAHDLDDELTERGDGLQAVQQHIKKNQGLRREIQA 1575

Query: 206  SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                 +  L RA A   ++  +   +  G      A A L                ++ +
Sbjct: 1576 HGPRLEEVLERASALASLRSPEAEAVRRGLEQLQSAWAGLREAAERRQQALDAAFQVEQY 1635

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                    +            +            L    ++ E        S     R  
Sbjct: 1636 YFD--VAEVEAWLGEQELLMMSEDKGKDEQSTLQLLKKHLQLEQGVENYEESIAQLSRQC 1693

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                    PD+  +       +++    K   +   +  + +            +     
Sbjct: 1694 RALLEMGHPDSEQISRRQSQVDRLYVALKELGEERRVALEQQYWLYQLSRQVGELEHWIA 1753

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
            +K+    + +          L           G        +++   +   I   +   A
Sbjct: 1754 EKEVVAGSPELGQDFEHVSVLQEKFSEFANETGTA-GRERLAAVNQMVDELIECGHTAAA 1812

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
                 K  L +       L   +  L   +   +K   D  +L+  + ++       T  
Sbjct: 1813 TMAEWKDGLNEAWAELLELMGTRAQLLAASRELHKFFSDARELQGQIEEKRRRLPRLTTP 1872

Query: 506  PHWQSRLS--EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
            P  +   S  +         +  ++  +  L        +                 LQ 
Sbjct: 1873 PEPRPSASSMQRTLRAFEHDLQLLVSQVRQLQEGAAQLRTVYAGEHAEAIASREQEVLQG 1932

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                                     S++         + + W+D I   I        + 
Sbjct: 1933 WKELLSACEDARLHVSSTADALRFHSQVR--------DLLSWMDGIASQIGAADKPRDVS 1984

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                L          L      L   +E        K+  ++  +Q+ L+     K    
Sbjct: 1985 SVEVLINYHQGLKTELEARVPELTACHELGRSLLLNKSA-MTDEIQAQLDKLGTRKEELL 2043

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
              H F           T          + S   +   ++   + F       +      R
Sbjct: 2044 EVHQFAQEAVVADAWLTAQEPILQSRELGSSVDEVEQLIRRHEAFRKAAAAWEERFSSLR 2103

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
            +L    K    +  +P  PL  +      +E+      P          L+ +     D 
Sbjct: 2104 RLTTIEKIKAEQSKQPPTPLLGRKFFGDPTELAAKAA-PLLRPGGYERGLEPLARRASDT 2162

Query: 804  DRTDRGTLFHNIITELIKKRINK---NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
               +  T    +  EL  +R+       PEI   ++  +     ++        +   + 
Sbjct: 2163 LSAEVRTRVGYVRQELKPERLQPRIDRLPEIPGRVEPAVPPAAPEDAAETPATPVAPVVA 2222

Query: 861  HKISHSFLEHEEKIQS 876
             ++       E   ++
Sbjct: 2223 EQVRPRPERQESADRA 2238


>gi|50954632|ref|YP_061920.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951114|gb|AAT88815.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 570

 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 51/566 (9%), Positives = 119/566 (21%), Gaps = 57/566 (10%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T R+  ELR    ++           ++       +                 
Sbjct: 56  RVMALTFTTRSAAELRGRLRQLGAGGVA----ARTFHSAALAQLNYFWPQVVG------- 104

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                +L  ++      L    + L      +     A  I   K     ID       +
Sbjct: 105 ----GQLPSVLDGKGRVLGHAAEKLGARVDTATLRDVAAEIEWRKVTGLSIDQYAERLTE 160

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223
                AL+ E+           L    +   +   +L+    +     ++  E    M  
Sbjct: 161 RSIPGALRPEQLVD--------LHRTYEELKDERKQLDFEDVLLACAGMIEVEPSVAMQV 212

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
           +      ++       P   +L+           V+   D       +            
Sbjct: 213 REQYRFFVVDEYQDVSPLQHQLLRLWLGPRKDLCVV--GDASQTIYSFAGARSDYLLDFG 270

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                                     +++    +  +   +  + +      T       
Sbjct: 271 REHQ----------------GATVVRLEQNYRSTPAVIRTANNLMRGRAGALTLHAVAEP 314

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--SALITADRNLARR 401
              + +P            E +++R EA ++  A+   L    +    A++      +  
Sbjct: 315 RPGDDVPPSA---------EFEDDRAEARAVVEAIAAELAAGARPEGIAILYRVNVQSAA 365

Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL--AKFGF 459
           ++  L   GI+  +                  L A         +   V   L    +  
Sbjct: 366 LEQALGDRGISYTVRGARRFFDLPEVRQAIMTLRAASMAATDEPLFKSVSDVLRTLGWSV 425

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                  A                D+    S                             
Sbjct: 426 QPPEARGAVRDRWESLNAIMGLVDDVPAGTSFRRFTDELLARQAGQHEPILAAVTLGTLH 485

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
           A   ++     +  L       +       I D  +  +           R        +
Sbjct: 486 AAKGLEWDSVYLIGLSEGLVPISYASSFEQI-DEERRLLYVGITRARKRLRLSWAQRSAQ 544

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEW 605
            G+ +    S+ +   +    +    
Sbjct: 545 PGRPVLRQASRFLAELAAPAVDQRRA 570


>gi|319957659|ref|YP_004168922.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511]
 gi|319420063|gb|ADV47173.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511]
          Length = 915

 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 45/476 (9%), Positives = 105/476 (22%), Gaps = 57/476 (11%)

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
            + +  +  L  I    +   +    +   E  +     +   I   +    + +T    
Sbjct: 455 PLAEATAQALRLIDAGIDPERIAFLVATNKEGKELQERCVEAGIPTVLQTSSSLRTLPQI 514

Query: 544 TCGNLSISDWTKLTVTCLQNVCLD-EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                      +      + +      ++ P+L +         +  +++E+ +    + 
Sbjct: 515 AALVRMAEHLYREEALDAEALLRRSGRKEHPDLGWYRPSMRPVEVLHRLLESYAAFDNDP 574

Query: 603 IEWIDI-----------ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                +                +   +           IL    S+ L FD +IL   + 
Sbjct: 575 NFLRLLEFAAGYESLPEFLEEFESSRIGVAPHTLRGARILTIHGSKGLEFDYVILLDRS- 633

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
                         R       L             F   +G      T +         
Sbjct: 634 -------------GRGSSERDALIPRYNENLHIERFFYRISGRERFDETYAELLEERKAA 680

Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
           A +    LL +  T   + +           + +         +R +     +       
Sbjct: 681 AEKDRLNLLYVALTRAAEGMI----VLKKPEQSIFEPLGMVPMRRGELPKIEDESKVQEE 736

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
              I  ++   Y          D       +      GT  H  +  +           +
Sbjct: 737 APRIPDVVLSRYGRQEEPPTSEDEGEGPDYE--AILFGTALHYALEMMEPFGPEGIEGAL 794

Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKM 889
           + +  +          L              +     F +     +         I  + 
Sbjct: 795 DAVRNRYGAQ------LSEEQIAAIASRMEALMQDEPFTQMLRGAR---------IQKEQ 839

Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945
            +   G  L    D +         I DYK           +    QL     A++
Sbjct: 840 PLAHRGKLL--QIDLLLDYGD-RFRILDYK-----SSRKFAEHHRRQLRTYIEAVE 887


>gi|149918588|ref|ZP_01907077.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149820664|gb|EDM80076.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 1839

 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 58/594 (9%), Positives = 144/594 (24%), Gaps = 29/594 (4%)

Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN---------LADIIDIIETEEK 164
            LI     + P+  +   P  P  L       +  A           LAD+  +     +
Sbjct: 203 ELIHAHLARRPEPPRRHAPGLPERLSAIVMKLLEKAPEHRYQSALGLLADLERVAAALAR 262

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
             E    L  +    W  L         +                 ++AL+R        
Sbjct: 263 GAEPEFELGRDDRPQWLQLPHQLYGREGERAQLAKALERCVDEGSRRVALIRGGLGLGKT 322

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                    G T +  +  R     +        +       P  +     E+      +
Sbjct: 323 ALLTSAAQLGGTLAFGSYEREGGPHSGLIQALQAVLEQLLAEPEEVLARWGERLRGALGT 382

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                +    +L   L+ +     +   L  +        + ++   L       R   +
Sbjct: 383 LAPVVS----ALLPELELVIGAPGEPAALPELEPVERKHRLYLALGRLLTGLCAARPLIL 438

Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
             + +    +   ++ L  + + +   + +A     +  E+  + A +         +  
Sbjct: 439 ALDDVHRADEASLELLLALSRDGKGPLLLVASYRSEAEPESASELAGV-------EGLIA 491

Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL-------AKF 457
           EL   G         PL  +    +L   L A+    D +    L +             
Sbjct: 492 ELGAQGRPPLELELRPLDESELERLLVDALGAVSGPLDELLAFVLRRSGGRPLAIRQLLL 551

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
              +  L R         +   + +    D+ +L+  ++             +  + E  
Sbjct: 552 HLGDMGLLRPSATGWTWDIDALRRASVPGDVLALLGAKLERVDPIQREVLELAACAGERV 611

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
           +  +LL +                     +  +             +      ++     
Sbjct: 612 DPTLLLGELGGPFELDPDALFATLRELVDSGLLYTEAPGFRFTHARLRELVLARMEAGRR 671

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                 L             +   A   +  +  L+D       ++ +    +L      
Sbjct: 672 RRASWALGRELLARAGGARALTLAAGGGLFRVVDLLDLGARGRPLDAALRGELLELNLEA 731

Query: 638 LLNF--DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                 +   +       +  +  +   L R ++   +   A+    +A  D  
Sbjct: 732 GDRALGEAAWVRAERYYGFVLDGLEGEGLPRALRFRASFGLAQALYLRAEFDRA 785


>gi|325675761|ref|ZP_08155445.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
 gi|325553732|gb|EGD23410.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
          Length = 723

 Score = 44.1 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 51/452 (11%), Positives = 115/452 (25%), Gaps = 39/452 (8%)

Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA--SKYWTERLVELNASSP 207
           ++LA  I+  +      ED  A+           AA    +    +    R  +      
Sbjct: 150 RDLASEIEWAKGSLVAPEDYPAVAARARRDIPADAAKVAAVYSGYEELKARNYDGMLLDF 209

Query: 208 VGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
               +    A  EH       +      ++       P   R++       +   V+   
Sbjct: 210 DDLLLHTAAALEEHSAVAEEFRDRYRCFVVDEYQDVTPLQQRVLDAWLGDRDDLTVV--G 267

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D +     +   T K     S        P  ++ +L        E V         +  
Sbjct: 268 DANQTIYSFTGATPKYLLDFSRRF-----PDATVVRLERDYRSTPEVVS--------LAN 314

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
           R +  ++  +      +        +              E D+E  EA ++A  ++  +
Sbjct: 315 RVIGEARGRIAGTRLQLIGQRPSGPEP----------TFAEYDDEPAEAAAVARQIKKLI 364

Query: 383 DENKKKS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
           ++  + +  A++      +   +  LT  GI   +  G    T        + L  +   
Sbjct: 365 EQGVEPAEIAVLYRINAQSEVHEQALTEAGIPYQVRGGEGFFTRQEVRQAINALRQVAGR 424

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
           +D    A      L              +     A    +       L +LV        
Sbjct: 425 DDLPEGADT-GQALVTLVRAVLVPLGLTDVEPTGAQARER----WGSLTALVSLTEELLA 479

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
           ++ H+           +  A          +  L   K  +      + +++ T      
Sbjct: 480 HDPHLTLGGLLAELAARSEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLTEGTLPIAHV 539

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
           L +      +             ++     + 
Sbjct: 540 LGDSNSPGDQDGIEEERRLLYVGVTRPREHLA 571


>gi|315655631|ref|ZP_07908529.1| exopolyphosphatase [Mobiluncus curtisii ATCC 51333]
 gi|315489695|gb|EFU79322.1| exopolyphosphatase [Mobiluncus curtisii ATCC 51333]
          Length = 519

 Score = 44.1 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 46/390 (11%), Positives = 109/390 (27%), Gaps = 52/390 (13%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            +    R   +NP    +V     T++A  E+++   E  G         ++       +
Sbjct: 55  RIAYGVRSGQVNPE---NVLALTFTQKAAAEMKTRL-EGLGVGQVWA---RTFHSAALAQ 107

Query: 89  FTADLL-LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE-SPLSLPISPANAI 146
                  +     P ++ ++  L  A  + +  N     ++ L  E     + +   +  
Sbjct: 108 VRHFWPQVMGGTVPTLTGLKATLVTAAGVRLGLNLGKAQVRALAGEIEWAKVSLVDPSHY 167

Query: 147 WLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
            LA   A         +   E +  L    +         DF  I        L+     
Sbjct: 168 ALAARAAG---REAVADLSTERVAELLDAYEDAKIAAEMLDFEDIL-------LLCAGMM 217

Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                    +R +            ++       P    L+ +         V+   D  
Sbjct: 218 DEREDVARTIRNQ--------YRYFVVDEYQDVSPLQNYLLMSWLGRRRDLAVV--GDAA 267

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                +   T +     +      T+P+  + +L+       +                 
Sbjct: 268 QTIYSFAGATPEYLTEFT-----QTYPEAKVVELIRDYRSTPQI--------------VN 308

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384
           + ++       +D         ++ + ++   +V+   A ++  EA  IA  ++  L E 
Sbjct: 309 LANQVLAQAKGTDG-RPLGGTVRLVSQRETGPEVSWFVAPDDETEAKEIARRIQDLLAEG 367

Query: 385 -NKKKSALITADRNLARRVKLELTRFGINI 413
            +  + A++      A    + L    I  
Sbjct: 368 LSPSQIAVLFRTNAQAALFAVALGAKRIPF 397


>gi|71899881|ref|ZP_00682029.1| phage-related protein [Xylella fastidiosa Ann-1]
 gi|71730321|gb|EAO32404.1| phage-related protein [Xylella fastidiosa Ann-1]
          Length = 426

 Score = 44.1 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 66/242 (27%), Gaps = 32/242 (13%)

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823
             +Q    S S   + ++ P +V   R  K              D GT+ H +        
Sbjct: 1    MSQHAMLSPSSAHRWLHCPASVPLTRTCK-------DDSSPFADEGTVAHTV-------- 45

Query: 824  INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKI 881
                       ++   D+              W            ++++   I       
Sbjct: 46   -------AADALRTGCDASAYVGACHEVNGHRWEVTAEMAAYVQEYVDYVRAIAG---VR 95

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
             V  P ++A  +      G AD + +L    + I D K G            + QL L A
Sbjct: 96   LVEQPLRIASITGEQGAKGTAD-VVILAGDELTIVDLKYGR---GVKVFAEGNEQLQLYA 151

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001
             A     F+ ++  +   L  ++ +     + +    +         +        +   
Sbjct: 152  LAALQ-EFAGVEAFQHVRLVIVQPRLGHADEWVRTLPQMEDFRRKVAQGAARCRAAIGHY 210

Query: 1002 QN 1003
             N
Sbjct: 211  DN 212


>gi|262194981|ref|YP_003266190.1| amino acid adenylation protein [Haliangium ochraceum DSM 14365]
 gi|262078328|gb|ACY14297.1| amino acid adenylation domain protein [Haliangium ochraceum DSM
            14365]
          Length = 7712

 Score = 44.1 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 78/798 (9%), Positives = 178/798 (22%), Gaps = 60/798 (7%)

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179
               +   I      + L+  +  ++ I     L   +     +       H L      +
Sbjct: 4614 AAVIARSIGSDQRRALLAYLVPTSDDIPSVDALRAFLAQRLPDYMLPASFHFLDALPLTV 4673

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--GPIIIAGSTG 237
               L    L        E        S    +     A A+          P I      
Sbjct: 4674 HGKLDTRALPEV-----EFAAAATGDSYEAPRSDAEAALADIWSTVLGIERPGIHDDFFA 4728

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                +   +  +A      + L   D    + I    T  S    S            L 
Sbjct: 4729 LGGDSILSIQIIARASQIGLHLTPRDIFEHSTIAAQATAASRTRRSRAEQGPVTGPAPLT 4788

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
             +  +   +  + +   N S  +  R  +   +      +  R+ D L  +         
Sbjct: 4789 PIEHWFFEQPRERRGHWNQSMLLRARQRIDGDALAAAVRAIARHHDALRLRFYEQADGTW 4848

Query: 358  DVALIEADNEREEAISIAIALR--------MSLDENKKKSALITADRNLARRVKLELTRF 409
            +  +  A +       I +            +  +    +A+  A R  A  V+  L   
Sbjct: 4849 E-QVHAAPSHEAPVTLIDLVALGALAAEPAEAEADADDAAAVAEAVRVHADEVQRSLDLS 4907

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
               +   A   L       +L  + + +     +  +   ++   A+     +    AK 
Sbjct: 4908 TGPLLRVALFELGPQREQRLLIVIHHLVVDGVSWRILLEDLQQAYARCAAGREPELPAKT 4967

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
            +      +          L+  +    A ++             E  +     L      
Sbjct: 4968 SSFQQWSQALLAHAQQPALRQQLEYWSAPERARVPALPADHPQGENRETAQASLA----F 5023

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             +   +T      +     +  D   L           +   +         + +     
Sbjct: 5024 ALDAELTRALLHETAAAYRARVDELLLAALSATLSEWTKSTLVQVDVEGHGREDIDDEVD 5083

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
                 G            ++  L            S    +L  L +       +   GL
Sbjct: 5084 VTRTVGWFTTIYP-----VLLSLDPAGDALADNAASDDDALLAILRAVKEQRRAVPGHGL 5138

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
              G+       +       ++ L      +        F+       +    +       
Sbjct: 5139 GYGLLRYLGDDD------ARAALRALPGSQVAFNYLGQFDQLQQAASVFAVANEPTGANR 5192

Query: 710  TIAS--RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK--------QPHYKRPKP 759
             +++  R+   L    G          G    +         +                 
Sbjct: 5193 DLSAQRRYELELNGYVGDARLQLTWFYGSERYERATIERLAARFVEHLAALVARSGEANA 5252

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819
            + P +      S S +++L     A+     L               +RG          
Sbjct: 5253 YVPSDFPLAMLSASALERLAGRWPALEDVYPLTPLQAGMLFHSLYAPERGEYLGQ-FAWY 5311

Query: 820  IKKRINKNTPEINHLMKQIIDSHFEKENLP-----------PHIDIIWRHLFHK------ 862
            +   ++ +  +        +        L            P    I +H +        
Sbjct: 5312 LHGPLDADAFQRAWQAVVDLHPVLRSAFLWQDLDEPQQVVVPAQVRIEQHDWRDRTSEIN 5371

Query: 863  -ISHSFLEHEEKIQSSIE 879
                +FL+ +      +E
Sbjct: 5372 PAIDAFLQRDRARGLDLE 5389



 Score = 42.2 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 81/750 (10%), Positives = 180/750 (24%), Gaps = 89/750 (11%)

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
             S  SI  TAR            +        +      +                  P 
Sbjct: 2111 DSILSIQVTARAGRAGVRITPRQVFEHPTIHELAAVADQSSDLLGDVAAEQGPVTGAAPL 2170

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
              +      LD+ R         S  +  R  V + +      + + + D L  +     
Sbjct: 2171 TPVQARFFALDLARPQHWN---QSMLLRARQPVDADALAAAVRAVLGHHDALRLRFERGD 2227

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
               +      A         ++      L   ++  AL T    L       L      +
Sbjct: 2228 DSNAAWRQEHAAPVTT--APLSRWDLGDLPAEQRDEALRTRASELQ----ASLDLATGPL 2281

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
               A   L       IL ++ + +     +  +   ++               AK +   
Sbjct: 2282 VHVALFDLGPDAEQRILIAVHHLVVDGVSWRILLEDLQSAYEHAAAGRAPQLPAKTSSFQ 2341

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE-EDKELAVLLVDHILQCIT 532
               R  ++    + ++  +       +                + + A + ++      +
Sbjct: 2342 QWARALRDHAHSLAVRQQLDYWSDPTRAQLAALPVDHGHGSNREADHAAVTIELDADTTS 2401

Query: 533  PLVTYKTNKNSTCGN--------LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
             L+   T+      +         ++S WTK     L             L         
Sbjct: 2402 ALLQQATSSYRARVDEILLAPLVATLSAWTKSPTIQLDLEGHGREEVGTPLDLSRTVGWF 2461

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF--- 641
            ++++   ++ G+     +     +         V         L  LG  ++R       
Sbjct: 2462 TAVYPVRVDLGAVAAPGSGALAALRAVKEQRRAVPAHGLGYGLLRYLGDDQTRATLAALP 2521

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701
            D+ +       +         F+     +  +   A            +  G   L ++ 
Sbjct: 2522 DSQVAFNYLGQLDASFAQDAMFVPADESAGPDRDPAAPRRYLLEISGYVLQGRLQLTWSY 2581

Query: 702  SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
            S   +   T     ++RL           + +R       + +    +  P     +P  
Sbjct: 2582 SAAAHQRAT-----IERLAADFTAALQTLIAERT------SARAYVPSDFPLAALSQPAL 2630

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
                +        I    N                            G LFH+       
Sbjct: 2631 DQITERWPARADGIDTAEN--------------PTIEDIYPLSALQEGMLFHS------- 2669

Query: 822  KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
                         ++      + ++        I    F +   S ++    ++++    
Sbjct: 2670 -------------LQAPGRGEYFEQLAWELGAEIDVDAFERAWQSTVQCHPILRTAFVWR 2716

Query: 882  FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941
             V  P ++ +    +H+T    R+D          D        +E   +        E 
Sbjct: 2717 DVPQPMQVVLSDAPVHIT----RLDWSD------ID-----PSSQEQRLR--------EL 2753

Query: 942  AALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
             A +      +D   +  L YIRL      
Sbjct: 2754 LAAERARPFALDAAPLMRLSYIRLDAARGY 2783


>gi|307327019|ref|ZP_07606209.1| putative signal transduction protein with Nacht domain
           [Streptomyces violaceusniger Tu 4113]
 gi|306887317|gb|EFN18313.1| putative signal transduction protein with Nacht domain
           [Streptomyces violaceusniger Tu 4113]
          Length = 831

 Score = 44.1 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 71/776 (9%), Positives = 174/776 (22%), Gaps = 28/776 (3%)

Query: 79  KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE---LARLILIWRNKLPDIIKDLYPESP 135
             + ++   +   D  +           +R L    L R+     N      +     +P
Sbjct: 8   TLVQELFVAEGPVDRPVRIASLVAFQGDRRTLTERDLPRIASALVNAEQQQGQGQQHPAP 67

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
                       L   LA  +  + T +        L  E +     +AA          
Sbjct: 68  EQAQTPAQARPELTDALARTLHALGTVDLDDLRAVRLGPEAFARHLAIAA---------- 117

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
            +    L+A     +        A  L    +    +  +  +          VA   + 
Sbjct: 118 PDADEGLDADDARTHASLREAVCAHILRFLVRRSPFVTAAEDAAFEERYARDIVA--AHD 175

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            + + G+D       W       +  T ++    + P        + + +          
Sbjct: 176 HLTIYGIDLAHSPDSWPLDAAYLSLETEADGGGPSAPAEQALAGRERVLLWGVAGSGKTT 235

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
           +   +                       +   +         D  L    +    A    
Sbjct: 236 LVQRLAVSVARGDLPTPLAGLRGRVPFVLPVRRFRRDGFPEPDGFLSAVRHPHTAAQPPG 295

Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
            A R+              +     R +L      +       + L T+  S++     N
Sbjct: 296 WAERVLSHGRGLLLVDGVDEAPEDERERLREALRELPARYPGNVWLVTSRPSAV---REN 352

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            +           L   PL++ G           A + +  R + +     +   L   R
Sbjct: 353 WLASELASERFTELKLSPLSREGVTAFIRRWHAAARQDITDRADLDRLSGDEETLLDAVR 412

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
           I               L           +    + +         +        +     
Sbjct: 413 ITRDLGRLATNPLMCGLLCALHRDRRGYLPRGRKALYDAALSMLLERRDRERAMLPPEGI 472

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                 +   L +      +    E    +++ +      +   A      + I R +  
Sbjct: 473 DLPQEPKIQLLQKLAHWMLVNGRSEMDRATAVETLGRHLPAIPHAARQGGPEEIYRHLLN 532

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
            T   +     ++  +       L+   ++     + +       +      M   L   
Sbjct: 533 RTGLLREPTPGSVDFVHRTFQDYLSARAVVERHDFDFLIDHAHLDDWEEVIRMSVALARP 592

Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
               Y+ +      +    +      +     +          L     +      +   
Sbjct: 593 DECGYLLE-----GLLAARKDARPVHARHRKLLAAACLEHATELDPEVRSRVHRYTRDLV 647

Query: 736 QCY-LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
           +   L+  R L +         P P    + +    + +     I D  A+     L+  
Sbjct: 648 RPTSLEAARALGWIGPIVLEMLPDPSGVSDEEAHRLAVTA--TSIADDRAIDYLVRLRDR 705

Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
                +       R         E+I     +        ++++      +    P
Sbjct: 706 GSWAVRAQLAGAWRRYDTDRYAEEIIGHLDERELDFPVSDLEEL--RALRRLGGRP 759


>gi|72161932|ref|YP_289589.1| Acetyl/propionyl-CoA carboxylase alpha subunit [Thermobifida fusca
            YX]
 gi|71915664|gb|AAZ55566.1| similar to Acetyl/propionyl-CoA carboxylase alpha subunit
            [Thermobifida fusca YX]
          Length = 1849

 Score = 44.1 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 71/603 (11%), Positives = 146/603 (24%), Gaps = 29/603 (4%)

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136
             ++ L D       A   ++ +L   +  +   +   R I   RN+L     DL  +   
Sbjct: 685  RLEPLSDTTTADQDAAPPVNVDLPEALEPVPAHVRAQRSITDLRNRLLGFDPDLCDDQHT 744

Query: 137  SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYW 195
                  A A  LA+  + + D +      + DL  L                 +     +
Sbjct: 745  LNNYLTARAEALAEGHSLLADELRLLTV-FADLAELSRNRPASDDSHSHVPSAREHFHTY 803

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
             + L    A  P  +Q  L  A A + +   +       S     A  R+        + 
Sbjct: 804  LQSLDVERAGLPDTFQTKLATALAHYGVTDLER------SPELEAAVFRIFLAQQRASHD 857

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            A ++  L               +                +  +     D+ R  V     
Sbjct: 858  AAIITALLRTWLQEP----PPPAALHEPVGLALERLVAATQVRFPAIADLARGVVFAWFA 913

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                   R+ V +         D           PN       +A +    E      + 
Sbjct: 914  QPLLRRNRARVYANVRQHLRYLDAH---------PNAPDRAERIADMVRSTEP-LVRLLG 963

Query: 376  IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              L     ++     ++       R     L     +        ++    S ++++   
Sbjct: 964  QRLVRDDRDHTVMLEVLARRYYGNR----ALRDVHTHRTPGCAFVVAQRTDSCVISAAAR 1019

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
                 +    +A L                   +  + +A   +      +    +    
Sbjct: 1020 FDTVDDALRELARLADGHATVDVDIYLAWQEQPDTFDAMAEELSARINAHVLPPQVRRVT 1079

Query: 496  IATQKNNTHVPHWQSRLSEEDKELA-VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                  +  V H        D   A   L+  +   I   +  +         L  +D  
Sbjct: 1080 TTVAGRDGAVMHHHFTFRPTDSGFAEERLIRGLHPQIAHRLQLERLSKFHLTRLPSADEE 1139

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                 C+        R+L       +   L     +++   +     A     I      
Sbjct: 1140 VYLFECVAR-DNPADRRLVAFAQIRDLTALRDHDGRLVALPTAEDVVATCLDSIRRARSR 1198

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                +       TL++    +      +TL+   L          +  FL+R        
Sbjct: 1199 QAAPQRFPTNRITLYVWPPSDLTRAELETLVERVLP-TTAGAGLEEILFLARQRHPHTGA 1257

Query: 675  KTA 677
             T 
Sbjct: 1258 LTP 1260


>gi|312140612|ref|YP_004007948.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311889951|emb|CBH49268.1| UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
          Length = 730

 Score = 43.8 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 51/452 (11%), Positives = 115/452 (25%), Gaps = 39/452 (8%)

Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA--SKYWTERLVELNASSP 207
           ++LA  I+  +      ED  A+           AA    +    +    R  +      
Sbjct: 157 RDLASEIEWAKGSLVAPEDYPAVAARARRDIPADAAKVAAVYSGYEELKARNYDGMLLDF 216

Query: 208 VGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
               +    A  EH       +      ++       P   R++       +   V+   
Sbjct: 217 DDLLLHTAAALEEHSAVAEEFRDRYRCFVVDEYQDVTPLQQRVLDAWLGDRDDLTVV--G 274

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D +     +   T K     S        P  ++ +L        E V         +  
Sbjct: 275 DANQTIYSFTGATPKYLLDFSRRF-----PDATVVRLERDYRSTPEVVS--------LAN 321

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
           R +  ++  +      +        +              E D+E  EA ++A  ++  +
Sbjct: 322 RVIGEARGRIAGTRLQLIGQRPSGPEP----------TFAEYDDEPAEAAAVARQIKKLI 371

Query: 383 DENKKKS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
           ++  + +  A++      +   +  LT  GI   +  G    T        + L  +   
Sbjct: 372 EQGVEPAEIAVLYRINAQSEVHEQALTEAGIPYQVRGGEGFFTRQEVRQAINALRQVAGR 431

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
           +D    A      L              +     A    +       L +LV        
Sbjct: 432 DDLPEGADT-GQALVTLVRAVLVPLGLTDVEPTGAQARER----WGSLTALVSLTEELLA 486

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
           ++ H+           +  A          +  L   K  +      + +++ T      
Sbjct: 487 HDPHLTLGGLLAELAARSEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLTEGTLPIAHV 546

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
           L +      +             ++     + 
Sbjct: 547 LGDSNSPGDQDGIEEERRLLYVGVTRPREHLA 578


>gi|291385479|ref|XP_002709281.1| PREDICTED: spectrin, beta, non-erythrocytic 2-like [Oryctolagus
            cuniculus]
          Length = 2388

 Score = 43.8 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/474 (7%), Positives = 99/474 (20%), Gaps = 13/474 (2%)

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
                     A +            W  +       +          Q    +     +  
Sbjct: 738  ERAQRLSQAAGLYQFQADANDMEAW-LVDALRLVSSPEVGHDEFSTQALARQHRALEEEI 796

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
            R     L  +  +       +S++               E +    ++  +  A +    
Sbjct: 797  RGHRPTLDALKEQAAALPAALSRTPEVQGRVPALEQHYQELQARAGERARALEAALALYT 856

Query: 367  EREEAISIAIALRM--------SLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
               EA +  + +          +L E  +   ++             L      ++  AG
Sbjct: 857  MLSEAGACGLWVEEKEQWLNGLALPERLEDLEVVQQRFETLEPEMNALAARITAVNDIAG 916

Query: 419  IPLSTTLHSSI-LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
              L+        + S    + +           K          +               
Sbjct: 917  QLLAANPPGKDRIVSTQEQLNRRWQQFRALADGKKAALTSALSIQNYHLECTETRAWMRE 976

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
              K       L + +   +A Q+           ++    EL     +            
Sbjct: 977  KTKVIESTQGLGNDLAGVLALQRKLAGTERDLEAIAARVGELTR---EANALAAGHPAQA 1033

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                       +  +  + T+   +    +  R    L   ++ +         + +   
Sbjct: 1034 SAINARLAEVQTGWEDLRATMRRREESLGEARRLQDFLRSLDDFQAWLGRTQTAVASEEG 1093

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                      +         V+    + S L  LG   +R       +            
Sbjct: 1094 PATLPEAEALLAQHAALRGEVERARGEYSRLRTLGEEVTRDQADPQCLFLRQRLEALGTG 1153

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
              +   +    Q  L      +   + A   E    ++  + + +     +   
Sbjct: 1154 WEELGRMWESRQGRLAQAHGFQGFLRDARQAEGVLSSQEYVLSHAEMPGTLQAA 1207


>gi|182437604|ref|YP_001825323.1| hypothetical protein SGR_3811 [Streptomyces griseus subsp. griseus
            NBRC 13350]
 gi|178466120|dbj|BAG20640.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
            NBRC 13350]
          Length = 1691

 Score = 43.8 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 67/611 (10%), Positives = 143/611 (23%), Gaps = 20/611 (3%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
              +  ++ G  + +          +A V       RA  + R   +     ++       
Sbjct: 648  TTVTDVVAGLDIGDATVRTSILERIAEVLGGANRARATLDGRRRELLSKEGRAEFAAEFA 707

Query: 80   SLGDVVEEKFTADLLL---SYNLNPPVSNIQ----RLLELARLILIWRNKLPDIIKDLYP 132
             LG  V     A          L   +  ++    R  E    +     +  ++ +    
Sbjct: 708  LLGQAVTGALAAAGTPESCDDQLARLLLQLENLESRFAEFDDFLAELAERRTEVYEAFSA 767

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA----LKNEKYGMWWLLAADFL 188
                        A  LA +   +++ I       EDL A      ++         AD L
Sbjct: 768  RKQTLQDERARRAERLAGSAGRVLETIARRVSSLEDLDAVHTYFASDPMVAKVRRTADEL 827

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            +        R  EL+       Q A         +    G +I  G       T     T
Sbjct: 828  RELGD--PVRAEELDGRLKAARQEAGRALRDRTELYADGGSVIRLGRHRFAVNTQPFDLT 885

Query: 249  VANHPNGAIVLPGLDCHIP---TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            +     G +       +        +         +  S        ++  A+LLD    
Sbjct: 886  LVPSGEGLVFALTGTDYRAPVTDPAFAAARPYGEQLLPSENAAVYRAEHLAARLLDEHGA 945

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
             R     L         R                                 + +    + 
Sbjct: 946  VRLGS--LPEAELRRLVRESAAEAYDEGYTRGVHDEDAAAILAALLRLHAEAGLLRHRSA 1003

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
                     A      L  +  + A+  A           + R       + G P     
Sbjct: 1004 VRAAAQHFWAYDADEPLRTSWSRRAVSLARARDTFGSAPAIARLREEWAAAIGSPSPAAP 1063

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
              ++   L   +        + + V+  LA F       + A++   L   R  +     
Sbjct: 1064 GHAVAAYLFEELTTGPAGFVVGSSVRAFLAAFHRAVGPDAYAEDLAALGDDRAARRQLVE 1123

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA--VLLVDHILQCITPLVTYKTNKNS 543
              L        A   +          L  E +  A    L + +   +           +
Sbjct: 1124 GWLAPYAETTGAGLGDGDLAEAVAVELCPELERYACDAPLTERLEGLLGDHPRVAGGALT 1183

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
               +  ++   +     +      +  +   +  E     L     +++      +    
Sbjct: 1184 VRIDELLARTAEFRDVTVPGFRAYQRLRTSLVTAERGRLRLDDHRPRVMSAFVRNRLLDE 1243

Query: 604  EWIDIITRLID 614
             ++ +I   + 
Sbjct: 1244 VYLPLIGDSLA 1254


>gi|257063577|ref|YP_003143249.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
            domain-containing [Slackia heliotrinireducens DSM 20476]
 gi|256791230|gb|ACV21900.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
            domain-containing [Slackia heliotrinireducens DSM 20476]
          Length = 1251

 Score = 43.8 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 61/179 (34%), Gaps = 18/179 (10%)

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP-HIDIIWRHLFHKI 863
             TD G+ FH +    ++    +   E + +   + D+      +    +D        + 
Sbjct: 1049 ATDVGSAFHALAQWSVEMANGQVEGEGHAVPLPVPDAQRIAAVMKVNGVDAASHVRLEEA 1108

Query: 864  SHSFLEHEE-KIQSSIEKIFVNIPAKMAIE---SIGIHLTGFADRIDLLKSG---FVDIT 916
               +   +      + + +    P  + +       ++L G  D +     G      I 
Sbjct: 1109 LLRWYGSDACARALACKNLQAEAPFFVTVPDDGGTELYLEGSIDLL--ASDGGFDQAYIV 1166

Query: 917  DYKTGDN--PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973
            DYKTG +     E  Q     Q +  A AL    + ++      +L ++R++Q+     
Sbjct: 1167 DYKTGGHEDETSEKLQTKHLLQATCYAYALFTQGYGRV------DLSFVRVEQEDADAP 1219


>gi|121609392|ref|YP_997199.1| beta-ketoacyl synthase [Verminephrobacter eiseniae EF01-2]
 gi|121554032|gb|ABM58181.1| beta-ketoacyl synthase [Verminephrobacter eiseniae EF01-2]
          Length = 3275

 Score = 43.8 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 67/758 (8%), Positives = 158/758 (20%), Gaps = 51/758 (6%)

Query: 118  IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY 177
              R+  P+  + L        P +P   + L     + + ++            L     
Sbjct: 1482 ALRDATPEAAEALRAAGLRLAPQAPRALLVLESGNEEPLSVVNPLLAALAGDEPLVVVTR 1541

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
              W + A D +          L    A  P      +             G   +  +  
Sbjct: 1542 SAWKIRADDAVDPVHHAAWGLLRVAAAEQPGREIAVVDLGAQAGWEALLPGLTAVGAAQR 1601

Query: 238  SIPAT--ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295
             I       L+  +A  P+ A  LP     +P   W+ +T     +   +  +  H    
Sbjct: 1602 WIAVRNGQPLLPRLAVQPHAAPALPPG--GLPNDGWHVVTGAFAGLGRLSVQWLAHHGAR 1659

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
               LL           +             V      P   +        +  I      
Sbjct: 1660 RIALLAPRPHADGADFQRAVSERYGCRLHWVPCDVGDPVQLTRALEDLQADGGIAGAIHA 1719

Query: 356  FSDVALIEADN-------EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
               +      +             + A     +  +      L+      A         
Sbjct: 1720 AGLLHDAPLASLDQSRMAPVLAVKAQAARTLHAWLQLNHGRYLLLYSSAAAALGAAGQGA 1779

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
              +      G+ L+ +  +      +          A    ++  LA  G      +   
Sbjct: 1780 HALASAYLDGLALAQSPDTLPTVVSIAWGAWGETGRAAEAALQSQLAAGGMGLLASAEGL 1839

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV-DHI 527
              LE   +RG      +  L   +                 +  +   +  A  L  + +
Sbjct: 1840 WHLEQAVMRGAPYRLAMRVLSERLDAERRALLAPATGASAPAAPASHARPSAQTLAPEDL 1899

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                           +       +  +         +      +L +    + G  L + 
Sbjct: 1900 HDAQAVAAWLTERIAAQLRLDDPARLSPRRDLLQLGLDSLLFLELSSDIQRQLGVRLDAE 1959

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
             +    T + +       +D+          +                  L         
Sbjct: 1960 RAYRDLTVAGLS---QLIVDLAGEAAPDTPARQAPAPLQHDAAGRHHAFPLTPIQHAYWL 2016

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
            G  + +     A +      ++               A D        + +        +
Sbjct: 2017 GRTDLIEYGGVACHVLFEWDLRHG-------------AFDLARFERAWNALV-----RRH 2058

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
                          +        + +R    L   ++                P      
Sbjct: 2059 DMLRMVVDADGQQRILPQVPAYRIARRDLRALSAGQQQQALEDTRQTMSYSVPPADRWPL 2118

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
                 SE+     D         L L                     ++ +L      ++
Sbjct: 2119 FELVASEL-----DGQRYRLHMNLDLLMFDVQSFKV-----------MMDDLALAYRGED 2162

Query: 828  TPEINHLMKQ--IIDSHFEKENLPPHIDIIWRHLFHKI 863
               +    +   + +    +E+        W+    ++
Sbjct: 2163 LEPLAITFRDYVLAEQARRQEDTWQGSWHYWQERLAEL 2200


>gi|21224983|ref|NP_630762.1| hypothetical protein SCO6688 [Streptomyces coelicolor A3(2)]
 gi|5457289|emb|CAB46976.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 1171

 Score = 43.8 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 78/688 (11%), Positives = 173/688 (25%), Gaps = 49/688 (7%)

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
           P   + A +               I AG         R+++        A++       +
Sbjct: 149 PEAVRRAALAFGRALRDDSAAHAGIGAGDLAREAHMRRILAARGQRRVAAVIGAFHVPGL 208

Query: 267 -PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL---------GNV 316
                  T+ E + +   S+   ++   Y+ A+L                       G+ 
Sbjct: 209 SDEDAPGTVAETAPDAGPSSPVVTSLVPYAFAQLDPGSGYPAGIRAPRWRQAVLDAGGDP 268

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                  +  +++       S          +   +      +  +     RE   ++  
Sbjct: 269 GRVRAAAARFLTEVCREIRASGDTAGTGEAVEALRLAGDLGTLRGLPVPGRRELVEAVTS 328

Query: 377 ALRMSLDENKKKSALI-----------TADRNLARRVKLELTRFGIN-IDISAGIPLSTT 424
            L      +++  A++           T    L   V+ EL    +       G  L  T
Sbjct: 329 VLGRGQALDRELGAVLVGTGRGRLAPGTPRSGLGPWVEAELAALRLPGPADPGGRDLRLT 388

Query: 425 LHSSILTSLLNAIFKLN--------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
              S L +    + +          + + +    +       +   +       L+LV +
Sbjct: 389 PLRSTLDARREILLQRLKECGVGYAEPVEVTGAGEGSALTTRWRAAWTPSVAARLDLVGV 448

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
           RG   +            R A     T         +     L  LL D + +    L  
Sbjct: 449 RGVTAAQAADGTLRENHRRAAEAGRVTSARVVALLGAAARCALTDLLHDGLTEAERVLPG 508

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL--SSLFSKIIET 594
                        +    +  +            +L  L  +   + L   +   +  + 
Sbjct: 509 AAALPELLAALDLLDSVRRRHLPGTTETVRIRAARLAGLLLDAAVRLLPGLAGSDEPRDA 568

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
            + +        D +   +DGE        S  L         LL+ D   L G     W
Sbjct: 569 VAVVTLAVRSAADRLGLRLDGELYALSRRGSPLLQGAAQAARVLLDLDGSDLLGTRLAGW 628

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
                      R+ +    +  A  ++ ++A                 L E         
Sbjct: 629 VDTATGPDGRRRLERRLTGVLVAAGFLIESA-----------STALGPLFERVETMSDRG 677

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
           +L RL  L G       + R +     + +L            +      A         
Sbjct: 678 FLDRLYALRGGFRALTPQGRSRVLAAVSDRLGDRPDLRLPAPAELVGRWAAADGEGLALL 737

Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII---TELIKKRINKNTPEI 831
            +  + D  +  A +       P  +  P   +             +  +  + ++T  +
Sbjct: 738 GELGLADLASAPAAKDAGATSAPAPRTAPSGAEVPHGAGAPRLGPADRWRLLLGRDTAGL 797

Query: 832 NHLMK---QIIDSHFEKENLPPHIDIIW 856
              ++   + +D  F++E      +   
Sbjct: 798 PAALRPYARALDELFDREGEEADEESRE 825


>gi|326437936|gb|EGD83506.1| hypothetical protein PTSG_04114 [Salpingoeca sp. ATCC 50818]
          Length = 1332

 Score = 43.8 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/468 (7%), Positives = 109/468 (23%), Gaps = 13/468 (2%)

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
                + + +      +  L+ A  + EE   +A  +R   +      A+I         
Sbjct: 470 WQSRFDALNSADAATQNHELMAARRKLEE---LASEIRDRDEHIHHYRAVIARLLAGNDP 526

Query: 402 VKLELTR-FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
           +           +D S     +     +  ++            +     +    +    
Sbjct: 527 IATADAEKLVSTLDASTSKASAYKPAITHASNWARGTDGHGTGGSGNRENEKEELRSTIG 586

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
           +          EL   R          L+        +  +     +   RL ++ ++L 
Sbjct: 587 QLEARVEALRTELGQHRTRAFQLQSQ-LRQAEQAAETSAGDAEANRNTVHRLRQQLEDLD 645

Query: 521 VLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
             +  +        L        +   + ++          L +           L    
Sbjct: 646 SEMQANARAHNAELLRATALQTKAREQSAALVQVLVQHFDELASSQSQLEELQATLMRTT 705

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
           +   +  L          +  +  +    I      +        +  +      +  +L
Sbjct: 706 DRAQIKRLQRVCASALGAVGESLQQLRQRIAHARGEQDAMQAATTAQDVI---GEKLHVL 762

Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
               L L         +        + +++ +  L+     +       +     +    
Sbjct: 763 TAQNLELKKEIRLTIEQMERSGEEKTSLLRINSQLRERIAVLQTEVETAQSTVRAKSEAM 822

Query: 700 TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
           TR+ ++        R               + ++          +  +   Q   +R   
Sbjct: 823 TRARQQYTQ----YRNAPETQPTAAPAPTTSTRRPATVQQQRAARSVHRQPQQIPQRTYR 878

Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
                 +    + +  +Q    P   YA    +       ++D   ++
Sbjct: 879 ERAPGTKTPGRAMTAAQQWPMSPDRRYAAARERHKQEGEEEEDVFGSE 926


>gi|300779588|ref|ZP_07089444.1| excision endonuclease subunit UvrD [Corynebacterium genitalium ATCC
           33030]
 gi|300533698|gb|EFK54757.1| excision endonuclease subunit UvrD [Corynebacterium genitalium ATCC
           33030]
          Length = 685

 Score = 43.8 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 53/573 (9%), Positives = 131/573 (22%), Gaps = 66/573 (11%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
               V     T RA  E+R    ++           ++       +            P 
Sbjct: 54  APQRVLAVTFTSRAAGEMRDRLRDMGIGGV----QARTFHAAALRQLRYFWPQVAGDMP- 108

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                       LI      +    + +  ES   +     + I  AK            
Sbjct: 109 ----------WHLIDNKFPLVGRAARSVGLESHKDMVRDLLSEIEWAKA----------S 148

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL-----NASSPVGYQIALMRA 217
               E                 A+ +    K + +          +    + +    +  
Sbjct: 149 LVTPESYAE-TIANSRREPPTDAEKVAAVYKRYEQSKTSPDGMALDFDDLLLHVAGALEN 207

Query: 218 EAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                   +      ++       P   R++       +   V+   D +     +   +
Sbjct: 208 APAVAEEFRTQYQTFVVDEYQDVTPLQQRVLEGWLGQRDDLTVV--GDANQTIYSFTGAS 265

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
                         T+   ++ KL        E       V ++  GR+           
Sbjct: 266 PDYLLNF-----SRTYGHATVVKLQRDYRSTPEVTDLANTVISKATGRAA---------- 310

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALIT 393
                       ++  ++    +       +E  EA  +A  +R  +D     ++ A++ 
Sbjct: 311 --------GTRLELQGMRAPGPEPTFASYADEPTEAREVAAQIRTLIDGGVPPREIAILY 362

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS----ILTSLLNAIFKLNDFMAIATL 449
                +   +  L+  GI   +  G              +L          +D + +A  
Sbjct: 363 RLNAQSAVFEQTLSDAGIVYQVRGGEGFFNRPEIREAIGVLVQATRRNDLPDDPVTVART 422

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI--ATQKNNTHVPH 507
              PL       +   + +    L AL               +   +    Q+  +  P 
Sbjct: 423 AFAPLGLSATEPEGAQQRERWQTLNALVELIADIVNTGEADSLPGVLQSLRQRAESKQPP 482

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
               ++      A  L    +  +  +       ++        +  +           +
Sbjct: 483 AVDGVTLASLHAAKGLEWDAVFLVGLVEKTLPISHAIKAGDEQIEEERRLFYVGITRARE 542

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                 +   +E G+        +      +  
Sbjct: 543 HLHLSWSFARQEGGRKSRDRSRFLDGIAPQLDV 575


>gi|312194652|ref|YP_004014713.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311225988|gb|ADP78843.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 733

 Score = 43.8 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 66/695 (9%), Positives = 166/695 (23%), Gaps = 63/695 (9%)

Query: 28  GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87
            T+     +     +    V     T RA  ELR+    +  +        ++       
Sbjct: 61  RTITRRIAHLTGQGVPGGQVLAVTFTTRAAGELRARLRGMDVEGV----QARTFHAAA-- 114

Query: 88  KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                                   L +L   W       +  L       +  +      
Sbjct: 115 ------------------------LRQLSYFWPKVAGTALPSLVDSRIPLIAKAAGGRRL 150

Query: 148 LAKNLADIIDIIETE---EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
               L D+   +E         ED      +      +   D +      + +       
Sbjct: 151 DRSELRDLASEVEWAKATLVTPEDYPVAAEKAGRDT-VWPPDAVAGLYAGYEKAKRAAGV 209

Query: 205 SSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  +       EH      ++      ++       P   R++       +   V+
Sbjct: 210 LDFDDLLLLTAAVIEEHSWVATELRTQYRHFVVDEYQDVNPLQQRVLDAWLGDRDSLCVV 269

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D +     ++  + +              P+ ++  L+       + V     + + 
Sbjct: 270 --GDPNQTIYSFSGASPRYLVEFPRRF-----PEATVVSLVRDYRSTPQVVALANALLDG 322

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL- 378
                              +         +  ++    +  L+E  +E  EA ++   + 
Sbjct: 323 AGTAEPPTGGLGAQAAPRGLAEVPARRPALVAMRPPGPEPTLLECADEAAEAKAVVARIG 382

Query: 379 -RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
             ++L     + A++      +   +  +   G+   +  G              LL A 
Sbjct: 383 ALIALGVPASEIAVLYRINAASEAYEEAIGAAGLPYLVKGGDRFFDRPEVRDAIRLLRAA 442

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
            +  +    A L    +               ++     R         +L +L    +A
Sbjct: 443 VRSAEADRPAGLAD--VVADVLRAGGWRATAPSVGAERER-------WENLAALHRLAVA 493

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                      +      D+     +       +  L   K  +      + ++D     
Sbjct: 494 LAAAEPEAGLERFVAELADRAAHQHVPTVEGVTLASLHAAKGLEWDAVFLVGLADGMVPL 553

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
           V    +  ++E R+L  +        L+  ++ +  T          ++D +       +
Sbjct: 554 VHAQSDEEIEEERRLLYVGITRARAHLTLSWA-LARTEGGRPRRRSRFLDGLRPT-RARS 611

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
              +  +       G   +R+       + G         T +       +   L     
Sbjct: 612 TPARAARDERGERGGDTRARVRAAVRCRVCGQALSGAAARTGRCETCPSRVDRAL----L 667

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
            +     A   E       +I T +  E    +  
Sbjct: 668 NRLRAWRAAKAEELRQPAFVILTDATLEAIAESRP 702


>gi|238064223|ref|ZP_04608932.1| polyketide synthase [Micromonospora sp. ATCC 39149]
 gi|237886034|gb|EEP74862.1| polyketide synthase [Micromonospora sp. ATCC 39149]
          Length = 2637

 Score = 43.8 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 82/777 (10%), Positives = 183/777 (23%), Gaps = 27/777 (3%)

Query: 53   TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
            T  A + L           +       S+ +   E     +     + P        L L
Sbjct: 1063 TTPAGRPLAEALAGRYPHATVGDLATASVPEDDAEICVVAVDPPGAVLPETDRDDAALGL 1122

Query: 113  ARLILIWRNKLP-DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171
             RL+         D    L   +    P+  A A          +      E     +H 
Sbjct: 1123 VRLVRALGAAGRTDAALTLRVVTAGVYPLDGATAPTPYGATCHGLARAAAREHPSWRVHV 1182

Query: 172  LKN--EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
            L             A   + +      E L+          + AL+   A    +     
Sbjct: 1183 LDVAAADLADPGAAAQAVMAVDLPVGEEVLLRGVRRLVRELRPALLPPAARSPYRERGVY 1242

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI----PTAIWNTITEKSTNITSSN 285
            +I+ G+ G     A  ++         +                          +   S+
Sbjct: 1243 LIVGGAGGIGAKLAEHLARTVRARLALVGRSVPGEAHQRLCDRIAAAGGEAVYLSADVSD 1302

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                      + +    L         L + +        + +               + 
Sbjct: 1303 PAALGAAVAQVRRRFGALHGVVHSALVLRDGTLRSMSDEWLRAVFAPKVAGMVALADALA 1362

Query: 346  ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS-LDENKKKSALITADRNLARRVKL 404
               +  +    S  + + A  +   A + A     + L  +  +  +   +      V  
Sbjct: 1363 GESLDFLLLLSSAQSFVGAAGQGNYAAASAYEDAFAGLLRHHGRWPVCVVNWGYWGSVGA 1422

Query: 405  ELTRFGINIDISAG----IPLSTTLHSSILTS--LLNAIFKLNDFMAIATLVKHPLAKFG 458
              T        + G     P       + L +  +   +    D   +A +++   +   
Sbjct: 1423 VATPEYARRLAAQGARSIEPAEGMEVVTRLLAGPVDQVLAVRTDPSRLAQVLRVGPSAGP 1482

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                  +         AL             ++   R A    +      +  L E  + 
Sbjct: 1483 DDAATPAAVVGVPAEPALPPPARLLADPPRLAVDTVRRAGVAWDALDALARRWLLETLRG 1542

Query: 519  LAVLLVDHILQCITPLVTYK----TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
              VL        +  L         ++      +++           + + +     +P 
Sbjct: 1543 AGVLTAAGQRSSLDELREILGVSADHERLLTALVNLLVRAGWLTRDGERLLVTAAADVPG 1602

Query: 575  LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
            +   +E + L++    +      + A    +  ++   +    V         L  +   
Sbjct: 1603 VPVADEARRLAAEHPAMRPHLRLLDACLSRYPQVLAGRVPATEVLFPGGSGELLDGIYAG 1662

Query: 635  ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA----HDFEM 690
            +    +F+ L+   + E V  + +     +  V     +  T+E               +
Sbjct: 1663 DEVTGHFNDLVGYAVAEFVRRRTSDGAAPVRVVEIGAGSGATSEVLFRVLRPYADRLRYV 1722

Query: 691  ANGTRHLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                 H    R+        P    R L     + G DF                  D  
Sbjct: 1723 FTDVSHQFVWRAAERFGPQFPAAKFRVLDIERDVAGQDFVPGEANLVLATNVLHATSDVA 1782

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQL---INDPYAVYARRILKLDFIPHFKKD 802
                  KR                 +   L   + D +  Y   +L++   P   +D
Sbjct: 1783 VALAQAKRLLAPGGWLVINEGTRVHDYATLTFGLLDGWWRYTDAMLRIPDAPMLDRD 1839


>gi|160899253|ref|YP_001564835.1| AAA ATPase [Delftia acidovorans SPH-1]
 gi|160364837|gb|ABX36450.1| AAA ATPase [Delftia acidovorans SPH-1]
          Length = 1841

 Score = 43.8 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 41/389 (10%), Positives = 105/389 (26%), Gaps = 24/389 (6%)

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT-QKNNTHVPHWQSRLSEEDKEL 519
            ++ L+R    LE +  R  ++   + D+ +   + + + +     +   + R ++   + 
Sbjct: 712  DEQLARLLVQLEEIESRFGEHEQFLGDIMAKREEVLESFEARRQSLQDERQRKAQGVLDA 771

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
            A+ +V  + + I  L +         G+  I    +L     + +         +   + 
Sbjct: 772  ALRIVQSLPKRIEKLASADALHAFFAGDPLIGKLKELAQRLREQLHDPVKADDIDGRVKN 831

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST-LFILGTLESRL 638
                         E      A         +       +          L ++GT     
Sbjct: 832  LRDQAFRALQDRTELYEGDGAIIRLGRHRFSVGNQELDLTLLPRNGELFLHLVGTEYFEP 891

Query: 639  LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
            ++   L              +   +    +  ++ L   ++  G +              
Sbjct: 892  MDNPELAALQAYWDASTPAESPQFYRGEYLALEVVLAARQRRDGWSEARLAQLL-PDEAA 950

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFD--------------NLKKRGQCYLDWTRK 744
             T+++RE + P     + + +                            R    L W+ +
Sbjct: 951  LTQAIREFSAPRYREGYERGIHDHDAARILQVLLPLRDAAGVLRFAPDARALALLFWSAQ 1010

Query: 745  -------LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
                   L     Q   +  +     +          ++  I++    YA     L  + 
Sbjct: 1011 AQVQQPQLAAAMAQWPLRAQQAQAMQQMFGSEAEQLSLRTDISERLRAYAEERGLLRDLL 1070

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINK 826
              +  P  +D  +L H     L  +   K
Sbjct: 1071 PGQAAPADSDIDSLIHGAADYLQAELAQK 1099


>gi|62184589|ref|YP_220493.1| hypothetical protein pFP1.1 [Streptomyces sp. FQ1]
 gi|61661473|gb|AAX51342.1| unknown [Streptomyces sp. FQ1]
          Length = 1430

 Score = 43.8 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 42/416 (10%), Positives = 84/416 (20%), Gaps = 15/416 (3%)

Query: 157  DIIETEEKKWEDLHALKNEKYG-MWWLLAADFLKIASKYWTERLVELN----ASSPVGYQ 211
            D I T      D+      +          + L  A   + + L   N     S  +   
Sbjct: 940  DRIATHLWLPADVVESDETRRRLGEAQSDQELLDRAVAAYADSLERDNDDRMVSDELAAA 999

Query: 212  IALMRAEAEHLMKGTKGPIIIAGSTG----SIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                 A         +   ++  +               S       G     G   H  
Sbjct: 1000 PEAHPAVPIPHQVQPEHERVVDETEQHPVPEPADVTEQHSAAVREDAGDDGTEGARAHPE 1059

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
             A           +  S    +   Q  L  L + L          G     +       
Sbjct: 1060 AAQEAAQAAAEHEVEPSAEDRAAARQAQLGVLRERLQGDGAPELT-GEQKARLEKLLAAG 1118

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
              S                       +  + +        R      A   R +  + + 
Sbjct: 1119 FTSRAEQQPEPEFEAWRDRPYGHVGTQRLTSLIAERTAQARRAERLAADLARQAEAKREA 1178

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
             +A +T  +  AR V   L R       +    ++       L      + +L +    +
Sbjct: 1179 LAAPVTPGQERAREVAEVLDRADQLAQNAVAERVAEQRAREALRHAQEVLRQLEEAKTKS 1238

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             L    L   G   K         +       +                     +     
Sbjct: 1239 RLA---LRLAGTSRKETLALAAEYDQRETAAYREILRANRAAETAHREAWATIRSPETVG 1295

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
            W  +     +  A   V+ +   +  +     +      N              ++
Sbjct: 1296 WFEQQG--SRREAPSTVEELQTRLAEMRERLPDIERITNNGVARAAANAERQAGEH 1349


>gi|323456029|gb|EGB11896.1| hypothetical protein AURANDRAFT_70682 [Aureococcus anophagefferens]
          Length = 5410

 Score = 43.8 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 56/585 (9%), Positives = 124/585 (21%), Gaps = 70/585 (11%)

Query: 300 LDFLDIKREDVKRLG-----NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
           L   D+        G      +S   +G +   ++  L    +    T +       +  
Sbjct: 287 LTGGDLGPRRHVLWGLSKDFGMSGLRFGVTWTKNEKLLSALATAAVFTCVPGPCQAMVAA 346

Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI--- 411
             SD A ++A         +A   R         +A++   R    R +  +  +     
Sbjct: 347 LLSDEAFVDA--------YLAENARALAASRDACAAVLDRLRLPYLRPRYGMFLWCDFSS 398

Query: 412 --NIDISAGIPLSTTLH---------SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
              + I  G   + +              L + L  +                +      
Sbjct: 399 LLPLIIGDGKRRAYSRAALFEAEAALYDALLNELRVVLTPGASQHAPEPGFFRICFAFVE 458

Query: 461 EKYLSRAKNALELVALRGNK--NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
              L  A    E    R     ++    DL S          ++      +    +  + 
Sbjct: 459 RDVLLVALAKFEAWVGRKRGEDDTDTDYDLSSCFDASARDGASSLASLRVEHAAVDGARL 518

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
              L+ D    C + L             ++++            +     +    + + 
Sbjct: 519 RVALVADGAAACASYLRVVANASGGEVAPVAVAPRPAGRYAATALLRPGVWQLRAFVEWT 578

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
                LS   ++                + +                    ++       
Sbjct: 579 GFAADLSWQAARTEGACVPKYLQKDALAEPL--------------------VMTVPPYAT 618

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
                     +   V          L         L   +  + + A  F          
Sbjct: 619 PAASPCGERAVGGYVAETWAPLGCVLPSEPGVRWLLVAGDSTLQELAVLFVAFLHA-ETT 677

Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
                R                              G  +                +   
Sbjct: 678 LACVRRALGDGDW-------------VAVATCPLGGGATFDALLDLNFSAESLRCPRGHD 724

Query: 759 PFPPLEAQPRTYSFSEIKQ--LINDPYAVYARRILKLDF---IPHFKKDPDRTDRGTLFH 813
            +   +A  R Y  S +    L        A  +L  D    +   +  PD     +  H
Sbjct: 725 RWRDFDATVRGYRVSFVWAGGLEPCRDHDGAASLLGADRRARLAALRGAPDAVLFNSGLH 784

Query: 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
           +      +     +       ++        +E   P+  +IWR 
Sbjct: 785 DAARAPTRGARRFDRGAYADRLRAAW--AVLREFAAPNATLIWRE 827



 Score = 38.7 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 82/760 (10%), Positives = 167/760 (21%), Gaps = 68/760 (8%)

Query: 107 QRLLELA--RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
           +R L L    +  +      D    L   +   L         L+K+             
Sbjct: 259 RRRLHLVSDEIYALSAVGDADGFLSLGELTGGDLGPRRHVLWGLSKDFG---MSGLRFGV 315

Query: 165 KWED----LHALKNEKY----GMWWLLAADFLKIASKYWTERLVELNASSPVGY--QIAL 214
            W      L AL                   L     +    L E   +         A+
Sbjct: 316 TWTKNEKLLSALATAAVFTCVPGPCQAMVAALLSDEAFVDAYLAENARALAASRDACAAV 375

Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARL--MSTVANHPNGAIVLPGLDCHIPTAIW- 271
           +       ++   G  +    +  +P           +            D  +      
Sbjct: 376 LDRLRLPYLRPRYGMFLWCDFSSLLPLIIGDGKRRAYSRAALFEAEAALYDALLNELRVV 435

Query: 272 ------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN----VSNEMY 321
                     E                  +LAK   ++  KR +     +       +  
Sbjct: 436 LTPGASQHAPEPGFFRICFAFVERDVLLVALAKFEAWVGRKRGEDDTDTDYDLSSCFDAS 495

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
            R    S + L  + + +    +    + +     +    + A+    E   +A+A R +
Sbjct: 496 ARDGASSLASLRVEHAAVDGARLRVALVADGAAACASYLRVVANASGGEVAPVAVAPRPA 555

Query: 382 LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                  +AL+                +            +  L      +    + K  
Sbjct: 556 GRYAA--TALLRPGV----WQLRAFVEW---------TGFAADLSWQAARTEGACVPKYL 600

Query: 442 DFMAIATLVK---HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
              A+A  +     P A               +                ++ L++   +T
Sbjct: 601 QKDALAEPLVMTVPPYATPAASPCGERAVGGYVAETWAPLGCVLPSEPGVRWLLVAGDST 660

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD----WT 554
            +    +             +   L D     +               +L+ S       
Sbjct: 661 LQELAVLFVAFLHAETTLACVRRALGDGDWVAVATCPLGGGATFDALLDLNFSAESLRCP 720

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFE--EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
           +               ++  +W    E  +      S +        A      D +   
Sbjct: 721 RGHDRWRDFDATVRGYRVSFVWAGGLEPCRDHDGAASLLGADRRARLAALRGAPDAVLFN 780

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                      + +  F  G    RL     ++               +P   R      
Sbjct: 781 SGLHDAARAPTRGARRFDRGAYADRLRAAWAVLREFAAPNATLIWRETSPQYKRFECEGS 840

Query: 673 NLKTAEKYIGQAAHDF-----EMANGTRHLIYTRSLRENNIPTIASRWL---QRLLVLGG 724
                 K +  AA                L Y R    +              R LV   
Sbjct: 841 GGNPGVKVMNAAAAPVARRVGAAVLPAHALRYLRPQDGDGHHCRDGPSCAAQLRFLVALL 900

Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                 +   G    D   +      +  Y +PK  P  E      + S +      P  
Sbjct: 901 GSRVAAMTAMGPEIPDL--EPFRGNGKVVYLKPKSNPHAEQIRAIIAASAM------PPG 952

Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
                +L +       +      RG  +H+ + +L+K+  
Sbjct: 953 AEYTTVLTVQHDLVVVEVRSAPCRGNGWHDSVKDLVKEPP 992


>gi|220925934|ref|YP_002501236.1| hypothetical protein Mnod_6109 [Methylobacterium nodulans ORS 2060]
 gi|219950541|gb|ACL60933.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
          Length = 1567

 Score = 43.8 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 71/614 (11%), Positives = 149/614 (24%), Gaps = 32/614 (5%)

Query: 77   IIKSLGDVVEEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
              ++L ++        L         + +   R   LA L                 ++ 
Sbjct: 778  RAQALAELASHLPEGLLPEVLQAARAIQNGGPRARALAGLAPHLPEAERAGAIAEALQAA 837

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
             ++    A +  LA  LA  +     E    E L A K  +       A   L       
Sbjct: 838  RAIQNEDARSRALAG-LAPHL----PEGLLPEALQAAKAIQDARERARALAGLAP----- 887

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS-TGSIPATARLMSTVANHPN 254
               L E          +   RA      +      +      G +P   +    + +   
Sbjct: 888  --HLPEAGRVDAFAEALQAARAIQNENARSRALAELAPHLPEGLLPEALQAARVIQDARE 945

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITS-------SNTTYSTHPQYSLAKLLDFLDIKR 307
             A  L GL  H+P A       ++             +   +    +   +LL       
Sbjct: 946  RARALAGLAPHLPEAGRADAFAEALQAAWAIQNENARSRALAELAPHLPEQLLPEALQAA 1005

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            + ++     S  + G +  + +  LP      R       +   +      +   E  + 
Sbjct: 1006 KAIQDENARSRALAGLAPHLPEGLLPEALQAARAIQNENARSRALAGLAPHLPEAERTDA 1065

Query: 368  REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
              EA+  A A+R          +L        R   +                +     +
Sbjct: 1066 FAEALQAARAIRDEDAHAHLLVSLTPHLPEAERAGVIAAALQAARAIQD--ESVRARALA 1123

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             +   L  A        A+          +   +        A+    L        +  
Sbjct: 1124 GLAPHLPEAERAGAFAEALQ-------TAWAIQDDRQRADLLAVLAPHLSEGLLPEALQA 1176

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHILQCITPLVTYKTNKNSTC 545
             +++   R   +      PH    L  E  + A  +       + +  L  +        
Sbjct: 1177 ARAIQDGRQRARALAGLAPHLSEGLLPEALQAARAIQDGRQRARALAGLAPHLPEGLLPE 1236

Query: 546  GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
               +                L  H     L    +   +           + +  +  E 
Sbjct: 1237 ALQAARAIQNENARARALAGLAPHLPEGLLPEALQAARVIQNEDARSRALAGLAPHLPEA 1296

Query: 606  IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
                  +   +  K    + + + +L +L   L   +   +            +K     
Sbjct: 1297 ERAGVIVEALQAAKEVQNEDARVHLLVSLTPHLPKAERAGVIAAALQAAKAIQSKWMRAQ 1356

Query: 666  RVMQSDLNLKTAEK 679
             +M    +L  AE+
Sbjct: 1357 ALMGLAPHLPEAER 1370


>gi|321398660|emb|CAM71896.2| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 1529

 Score = 43.8 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 69/621 (11%), Positives = 160/621 (25%), Gaps = 21/621 (3%)

Query: 276  EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
             +  +      T     Q    +L   L+   E+ + L     +                
Sbjct: 912  RQLASDNERLATELERAQEEAERLAGDLEKAEEEAETLAGELQKAQEDGERQKAGNRQLA 971

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395
            + + R    LE      ++   D+        +EEA ++A  L+ + ++ +++ A     
Sbjct: 972  SDNERLATELERAQEEAERLAGDLE-----KAQEEAETLAAELQKAQEDGERQKADNRQL 1026

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHS-SILTSLLNAIFKLNDFMAIATLVKHPL 454
             +   R+  EL R     +  AG        + ++   L  A        A    +    
Sbjct: 1027 ASDNERLATELERAQEEAERLAGDLEKAEEEAETLAGELQKAQEDGERQKADNRQLASDN 1086

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
             +     +        L     +  + +  +        +    QK +       +    
Sbjct: 1087 ERLATELERAQEEAERLAGDLEKAEEEAETLAGELQKAQEDGERQKADNRQLASDNERLA 1146

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
             + E A    + +   +      +  +     N  ++   +   T L+    +  R   +
Sbjct: 1147 TELERAQEEAETLAGELQ--KAQEDGERQKADNRQLASDNERLATELERAQEEAERLAGD 1204

Query: 575  LWF-EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
            L   +EE +TL++   K  E G   KA+  +      RL     ++   E++  L     
Sbjct: 1205 LEKAQEEAETLAAELQKAQEDGERQKADNRQLASDNERLA--TELERAQEEAERLAGDLE 1262

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
                        L    E    +        S   +    L+ A++   + A D E A  
Sbjct: 1263 KAEEEAETLAGELQKAQEDGERQRADNRQLASDNERLATELERAQEEAERLAGDLEKAQE 1322

Query: 694  TRHLI---YTRSLRENNIPTIASRWL----QRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                +     ++  +       +R L    +RL         +  +  G           
Sbjct: 1323 EAERLAGELQKAQEDGERQKAGNRQLASDNERLATELERAQEEAERLAGDLEKAQEEAET 1382

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
               +    +        + +        +   +        R    L       +     
Sbjct: 1383 LAAELQKAQEDGERQKADNRQLASDNERLATELERAQEEAERLAGDLQKAQEDAETLTAD 1442

Query: 807  DRGTLFHNIITELIKKRIN-KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
                  H+    L  +     +  E      +      E                     
Sbjct: 1443 LH--KVHDDGERLTAELQRVHDDDERLAAELEKAQEEAETLAADLQKAHEDGERLTADLR 1500

Query: 866  SFLEHEEKIQSSIEKIFVNIP 886
                 +E++   +++      
Sbjct: 1501 KLHNDDERLAPDLDRAQEEAE 1521


>gi|167836126|ref|ZP_02463009.1| exodeoxyribonuclease V, gamma subunit [Burkholderia thailandensis
           MSMB43]
          Length = 482

 Score = 43.8 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 45/435 (10%), Positives = 102/435 (23%), Gaps = 37/435 (8%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALSRRLELDVAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDAGAAPWRGSPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
             +W          + +          A D     +  W   L EL+ S        L  
Sbjct: 143 RPEWLAQWRDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 217 AEA------EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
           A A                + +       P    L+  ++   +  I             
Sbjct: 203 AGAFDPDVIARAQAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCR----EF 258

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
           W  I   +   +        + Q     L ++    +  +  L  ++             
Sbjct: 259 WFDIVTAARAESLDAADQLDYQQVGHPLLAEWGRQTQAQLHMLHELTESAAASDASRYAE 318

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFS---DVALIEADNEREEAISIAIALRMSLDEN-- 385
              P         IL+ +  +          V +    +   +   +   L    D +  
Sbjct: 319 NAAPTWLARVQNAILDLQPEDALGAPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPS 378

Query: 386 --KKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNA 436
                  +   D   A  +   +           I   I+   P      + +L   L  
Sbjct: 379 LAPSDVLVAMPDLAAAGPLIDAVFGTSSGADAARIPYRITGLPPSQANPVARVLLDWLAL 438

Query: 437 IFKLNDFMAIATLVK 451
             +      +   ++
Sbjct: 439 PERNVGAPELVEWLR 453


>gi|324999584|ref|ZP_08120696.1| ATP-dependent DNA helicase [Pseudonocardia sp. P1]
          Length = 663

 Score = 43.8 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 50/515 (9%), Positives = 112/515 (21%), Gaps = 68/515 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA  ELR+   ++           ++       +           +P   
Sbjct: 29  GQVLAVTFTARAAGELRTRLRQLDAGGV----QARTFHAAALRQLRYFWPQVIGGSP--- 81

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                     L+      +          +        ++ I  AK+             
Sbjct: 82  --------WPLLDGKFRLVGQAAARARVGTDSDALRDLSSEIEWAKS----------SLV 123

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-- 222
              D  A    +       A D +      + E              +    A  EH   
Sbjct: 124 APVDYAAEAARRKRDTPGPA-DQVAQVYAAYEELKNAAEVLDFDDLLLHTAVALEEHAGV 182

Query: 223 ---MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +      ++       P   RL+       +   V+   D +     +   + +  
Sbjct: 183 AEEFRSRYRCFVVDEYQDVTPLQQRLLDAWLGERDDLTVV--GDANQTIYTFAGASPRYL 240

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                    +               + R                 ++ +    P  +   
Sbjct: 241 LEFPRRFPGAA--------------VVRLQRDYRSTPQIVGCANQLIGAARHRPAGSRLQ 286

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397
               +     P+           E D+E  EA ++A  +   L +     + A++     
Sbjct: 287 LVGQLPPGPDPDFS---------EHDDEPAEAAAVAGRILTLLKDGTEPSEIAVLFRINA 337

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +   +  L+  G+   +  G               L                  P    
Sbjct: 338 QSEAYEQALSDAGVPYQVRGGERFFARPEVRRAMIALRGAAPDQR----------PGTDL 387

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
               + +  A+  L     +G         L +LV                +     + +
Sbjct: 388 VDVTRAVLGARAGLTDEPPKGATLRAQWESLLALVGVAEELAAIEPQADLTRLCAELDTR 447

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
             +          +  L   K  +      + ++D
Sbjct: 448 ADSAQAPVVQGVTLASLHAAKGLEWDAVFLVGLAD 482


>gi|302524541|ref|ZP_07276883.1| DNA helicase II [Streptomyces sp. AA4]
 gi|302433436|gb|EFL05252.1| DNA helicase II [Streptomyces sp. AA4]
          Length = 699

 Score = 43.8 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 58/515 (11%), Positives = 124/515 (24%), Gaps = 70/515 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA  E+R+      G  +       +       +            P   
Sbjct: 65  GQVLAVTFTTRAAGEMRTRL-RGLGVDAA---QALTFHAAARRQLRYFWPRVVGDRP--- 117

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                     LI      +    + +   +   +    A+ I  +K              
Sbjct: 118 --------WDLIDNKFRLVAQAAQRVRLSTETEVLRDLASEIEWSKA----------SLV 159

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             +D  ++            A  +    +++ E              +       +H   
Sbjct: 160 SPDDYPSVAARMQRDTPAPVAQ-VAEVYRWYEELKTNAQVLDFDDLLLQTTAVLEKHDAV 218

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +      ++       P   RL+       +   V+   D +     +   + KS 
Sbjct: 219 AAEFRDRYRCFVVDEYQDVTPLQQRLLDAWLGGRDDLTVV--GDANQTIYSFGGASPKSL 276

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
              +        P+ ++ +L        + V         +  R +  ++         +
Sbjct: 277 LEFTRRF-----PEATVVRLERDYRSTPQVV--------ALANRVIGAARGRPAGSRLKL 323

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397
                   +              E ++E  EA ++A  +R  LD      + A++     
Sbjct: 324 IGQRPDGPEP----------RFAEYEDEAAEASAVARRVRELLDADVPASEIAVLFRVNA 373

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +   +  LT  GI   +  G             + L         + + T V+  LA+ 
Sbjct: 374 QSEAYEQALTEAGIPYLVRGGERFFQRTEVRQAMAALRTASMEPTSLELVTAVRSVLARV 433

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
           G  E                G         L +LV                +     E +
Sbjct: 434 GLTE------------QPPSGGAAKERWDALLALVELAEELAATVEDADLPRFVAELEQR 481

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
             A          +  L   K  +      + +S+
Sbjct: 482 AAAQHPPTVEGVTLASLHAAKGLEWDAVFLVGLSE 516


>gi|37523698|ref|NP_927075.1| hypothetical protein glr4129 [Gloeobacter violaceus PCC 7421]
 gi|35214703|dbj|BAC92070.1| glr4129 [Gloeobacter violaceus PCC 7421]
          Length = 271

 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 67/244 (27%), Gaps = 31/244 (12%)

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              S S + +    P A   +            +         L H  +    +  + +  
Sbjct: 4    PLSASRLVRYATCPRAYAWKYRYHYPEPGGGGRRQRLG---ILLHATLGRFWQDWLGRRG 60

Query: 829  PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN--IP 886
                  ++++      +   P                S+   E +             + 
Sbjct: 61   DRSLGHLERLWRQGGGELEKPEQTSGW------HALESYYLQEVRRPEPPRPFASEGRLR 114

Query: 887  AKMAIESIGIHLTGFADRI-----DLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLE 940
              + ++ + +      D +     D      +D+ ++KT          +   D QLS  
Sbjct: 115  HSLVLDRVDVQFESRYDLLLWGEPDRRGVAGIDLVEFKTARQVRSLSQLEA--DLQLSCY 172

Query: 941  AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000
               L  G+      R V++  Y  L  +     +    ++Y+ ++           +V  
Sbjct: 173  --ILGIGAQYGQALRTVSH--YYLLSGEKLTFAVQPHHQRYALEKA--------QRLVAN 220

Query: 1001 LQNG 1004
            L +G
Sbjct: 221  LLDG 224


>gi|21233028|ref|NP_638945.1| glutamine synthetase adenylyltransferase [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66766901|ref|YP_241663.1| glutamine synthetase adenylyltransferase [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|57012835|sp|Q8P4V7|GLNE_XANCP RecName: Full=Glutamate-ammonia-ligase adenylyltransferase;
           AltName: Full=Glutamine-synthetase adenylyltransferase;
           Short=ATase; AltName: Full=[Glutamate--ammonia-ligase]
           adenylyltransferase
 gi|81307111|sp|Q4UZ80|GLNE_XANC8 RecName: Full=Glutamate-ammonia-ligase adenylyltransferase;
           AltName: Full=Glutamine-synthetase adenylyltransferase;
           Short=ATase; AltName: Full=[Glutamate--ammonia-ligase]
           adenylyltransferase
 gi|21114876|gb|AAM42869.1| glutamine synthetase adenylyltransferase [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66572233|gb|AAY47643.1| glutamine synthetase adenylyltransferase [Xanthomonas campestris
           pv. campestris str. 8004]
          Length = 937

 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 66/602 (10%), Positives = 145/602 (24%), Gaps = 43/602 (7%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           ARL       L +   D +            +A  +A +   +    + E + WE    L
Sbjct: 199 ARLGQQLARLLDETTADGFSHRVDLRLRPFGSAGRVALSFNGMDQYFQREGRDWERYAWL 258

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------ 226
           K             +L+    +   R ++  A   +    A + AE  H  +        
Sbjct: 259 KARAVAGDIAAGEAWLETLRPFVYRRYLDFTALDGLRDMKAAITAEVAHHARLDDIKRGP 318

Query: 227 ----------KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                     +   +I G   +     RL+  +    +   + P     +  A       
Sbjct: 319 GGIREIEFLAQSLQLIRGGREASLRERRLLPALQALVDLGQIDPPTGQALADAYRFLRRV 378

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +      PQ    +    L +     + L         R        L P  
Sbjct: 379 ENRLQMLRDAQTHALPQGEPERERIALGLGYAHWQALLEALAPHRTRVAAEFAELLAPRV 438

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                  + +      +   + +  I   +           L      +  ++    A  
Sbjct: 439 HATAPDTLADYWRALPEGDAAPLLGIGLHDPNN----AHHMLADFAQSSGVRALSDGART 494

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L R +   L          A            L  +L  +       +   L+      
Sbjct: 495 RLDRVMPALLHAAIRATQPDA-----------ALRRVLGLLQATLRRTSYLALLD----- 538

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                  L+R  + L   AL   + +   + L  L+  RI+    +    H     + + 
Sbjct: 539 --EQPSALARLVDVLSRSALLAERLAAYPLLLDELLDTRISGPLPDRAALHTACVDTLQI 596

Query: 517 KELAVLLVDHILQCIT-----PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            +    L +   + +       L T    +        ++   +  V  +  +   E   
Sbjct: 597 DDTEAALRELNERRLALSFRIALATLDGRQQPVDSTQQLAWLAEAVVQTVLQLARRELVA 656

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                       +       +E G     + +   D    +   +  +P         + 
Sbjct: 657 AHGQVPGGAFAIIGYGSLGGLELGFGSDLDLVFLYDHPREVEASDGKRPLEAGRWFARLA 716

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
             + + L            +     +  K   +S +       +         A     A
Sbjct: 717 QKVMTLLGAETGAGRLYDIDVRLRPDGGKGALVSSLASYRDYQRDRAWTWEHQALVRARA 776

Query: 692 NG 693
             
Sbjct: 777 VA 778


>gi|254245830|ref|ZP_04939151.1| ATP-dependent exoDNAse [Burkholderia cenocepacia PC184]
 gi|124870606|gb|EAY62322.1| ATP-dependent exoDNAse [Burkholderia cenocepacia PC184]
          Length = 1235

 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 94/903 (10%), Positives = 207/903 (22%), Gaps = 92/903 (10%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAG 234
            W  L A++L +A     ER       S       L  A   H      ++      +I  
Sbjct: 338  WLALIAEWLDMAPGELAERKRTRRVVSFDDLLANLYHALHAHPWLAETLRARYPAALIDE 397

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
               + P    +   +     G  +    D       +      +     +  +       
Sbjct: 398  FQDTDPLQFAIFDRI--FAPGGPLFLVGDPKQAIYSFRAADLHTYLAARARASACYTLAV 455

Query: 295  SLAKLLDFLDIKREDVKRLGNV----------SNEMYGRSMVISKSFLPPDTSDMRNTDI 344
            +       +D                                      P    D R   +
Sbjct: 456  NQRSTPAIVDACNRFFLSNPRAFVLDGLDYYAVRAGTRVRAPFVDETDPGPAGDFRVWAL 515

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARR 401
               +   +++     A      E    ++ A   R+ L E+       A++         
Sbjct: 516  PGGEGTLLKRDAQAQAAQACAAEIARLMAGAREGRVRLGESPLSPGDIAVLVQTHRQGSL 575

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            VK  L  +GI     A   + +T  +  L  +L AI    D   +   +           
Sbjct: 576  VKRVLATWGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLRRLRAALASDWFGLDAGA 635

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN---------THVPHWQSRL 512
             +     +           ++  +  ++     R+  ++             +   +  +
Sbjct: 636  LWRMEQGDGDAPSGASAADSADAMSWVERFSRYRLLWRERGFAVMWRTFTRELRIAERLM 695

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
            +  D E  V  ++H+ +      + +     T   L+              +  D +   
Sbjct: 696  AGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGGGEEAQLRLESDRNLVQ 755

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI---ITRLIDGETVKPKIEKSSTLF 629
                 + +G   + +F   +  G   +  +    D         D        ++++   
Sbjct: 756  IVTVHKSKGLEYAVVFCPFLNDGGLREPPSSALPDAREYHDDAGDAVLHYGCDDEAAAHA 815

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                L  +      L+   L   V+       P+LS     +         +  A H F+
Sbjct: 816  ARQALREQAAERARLVYVALTRAVYRCYVVAGPYLSSRSTREARRSVLNWLVAGAGHAFD 875

Query: 690  MAN-----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL----D 740
                            R+L    +         R   L                      
Sbjct: 876  AWLDEPPDEAALETAWRALAGGPVSVAPLPVPARRERLAAGHDASQTLAARHATRVLRDA 935

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
            W      +      +       +           +  +  D   ++A  +          
Sbjct: 936  WRMASFSSLTASMAREEAGVAAVPDDELRPDHDALAAVTPDGELIFADTVATDPPDDDIL 995

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
              P     G   H +                   +              P +      + 
Sbjct: 996  VFPRGAAAGECLHRLFELSRFTEPESWHAAALGALHD------RPVEAEPALAARLPAMM 1049

Query: 861  HKISHSFLEHEE---KIQSSIEKIFV--NIPA----------------------KMAIES 893
             ++    +  E         ++       +                         +A+E+
Sbjct: 1050 VRLVDDVVHTELVPGMRLVDLDPAKRLDEMGFLFPAPSLDLLALRRLLVAHGYPDVALEA 1109

Query: 894  IGIH--LTGFADRIDLLKSGFVDITDYKT---GDNPKK--------ETAQKLIDPQLSLE 940
              +   + GF D I     G   I D+K+   G  P            A      Q  L 
Sbjct: 1110 GTLAGFIKGFIDMIVEH-DGRFWIVDWKSNHLGTTPDAYGPRALDVAMADHAYHLQALLY 1168

Query: 941  AAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
              AL      ++        +A   Y+ ++          +     A   +   +  L  
Sbjct: 1169 TVALHRYLRGRLPDYDYDTHIAGYLYLFVRGVRPGWRSGGEPAGVHARRPARALVDALDR 1228

Query: 997  IVT 999
            ++ 
Sbjct: 1229 MMD 1231


>gi|170732538|ref|YP_001764485.1| exodeoxyribonuclease V subunit beta [Burkholderia cenocepacia MC0-3]
 gi|169815780|gb|ACA90363.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia MC0-3]
          Length = 1235

 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 96/903 (10%), Positives = 212/903 (23%), Gaps = 92/903 (10%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAG 234
            W  L A++L +A     ER       S       L  A   H      ++      +I  
Sbjct: 338  WLALIAEWLDMAPGELAERKRTRRVVSFDDLLANLYHALHAHPWLAETLRARYPAALIDE 397

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---TH 291
               + P    +   +        +    D       +      +     +  +       
Sbjct: 398  FQDTDPLQFAIFDRIFAPRG--PLFLVGDPKQAIYSFRAADLHTYLAARARASACYTLAV 455

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP-PDTSDMRNTDILENKIP 350
             Q S   ++D  +       R   +    Y      ++   P  D +D            
Sbjct: 456  NQRSTPAIVDACNRFFLSNPRAFVLDGLDYYAVRAGTRVRAPFVDETDPGPAGDFRVWAL 515

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---------KSALITADRNLARR 401
               +        +A   +  A  IA  +R + +   +           A++         
Sbjct: 516  PGGEGTLLKRDAQAQAAQACAAEIARLMRGAREGRVRLGESPLSPGDIAVLVQTHRQGSL 575

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            VK  L  +GI     A   + +T  +  L  +L AI    D   +   +           
Sbjct: 576  VKRVLATWGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLRRLRAALASDWFGLDAGA 635

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN---------THVPHWQSRL 512
             +     +           ++  +  ++     R+  ++             +   +  +
Sbjct: 636  LWRMEQGDGDAPSGASAADSADAMSWVERFSRYRLLWRERGFAVMWRTFTRELRIAERLM 695

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
            +  D E  V  ++H+ +      + +     T   L+              +  D +   
Sbjct: 696  AGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGGGEEAQLRLESDRNLVQ 755

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI---ITRLIDGETVKPKIEKSSTLF 629
                 + +G   + +F   +  G   +  +    D         D        ++++   
Sbjct: 756  IVTVHKSKGLEYAVVFCPFLNDGGLREPPSSALPDAREYHDDAGDAVLHYGCDDEAAAHA 815

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                L  +      L+   L   V+       P+LS     +         +  A H F+
Sbjct: 816  ARQALREQAAERARLVYVALTRAVYRCYVVAGPYLSSRSTREARRSVLNWLVAGAGHAFD 875

Query: 690  MAN-----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL----D 740
                            R+L    +         R   L                      
Sbjct: 876  AWLDEPPDEAALETAWRALAGGPVSVAPLPVPARRERLAAGHDASQTLAARHATRVLRDA 935

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
            W      +      +       +           +  +  D   ++A  +          
Sbjct: 936  WRMASFSSLTASMAREEAGVAAVPDDELRPDHDALAAVTPDGELIFADTVATDPPDDDIL 995

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
              P     G   H +                   +              P +      + 
Sbjct: 996  VFPRGAAAGECLHRLFELSRFTEPESWHAAALGALHD------RPVEAEPALAARLPAMM 1049

Query: 861  HKISHSFLEHEE---KIQSSIEKIFV--NIPA----------------------KMAIES 893
             ++    +  E         ++       +                         +A+E+
Sbjct: 1050 VRLVDDVVHTELVPGMRLVDLDPAKRLDEMGFLFPAPSLDLLALRRLLVAHGYPDVALEA 1109

Query: 894  IGIH--LTGFADRIDLLKSGFVDITDYKT---GDNPKK--------ETAQKLIDPQLSLE 940
              +   + GF D I     G   I D+K+   G  P            A      Q  L 
Sbjct: 1110 GTLAGFIKGFIDMIVEH-DGRFWIVDWKSNHLGTTPDAYGPRALDVAMADHAYHLQALLY 1168

Query: 941  AAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
              AL      ++        +A   Y+ ++          +     A   +   +  L  
Sbjct: 1169 TVALHRYLRGRLPDYDYDTHIAGYLYLFVRGVRPGWRSGGEPAGVHARRPARALVDALDR 1228

Query: 997  IVT 999
            ++ 
Sbjct: 1229 MMD 1231


>gi|297161820|gb|ADI11532.1| modular polyketide synthase [Streptomyces bingchenggensis BCW-1]
          Length = 1665

 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 52/512 (10%), Positives = 111/512 (21%), Gaps = 33/512 (6%)

Query: 100  NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
               V+    L+        W +     +     E    +    A+   LA +L  +    
Sbjct: 1000 PAAVAGPWLLVVPPEGADAWADASERALTADGGEVRRLVTDGRADVAELAASLRAL---- 1055

Query: 160  ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
              E      + +L                    + +      +  +  +   +     +A
Sbjct: 1056 YAEGPSPAGVLSLLPLDERPH------------EAFPAVTGGVTGTHVLLRALLDAELDA 1103

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       +        PA A++               G    +P ++ +   +   
Sbjct: 1104 PLWCATRGAVAVDDDEAPEAPAQAQVWGLGRVAALEHPTAWGGLVDLPASVADLAPDLLC 1163

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
             + +                   L     D +             ++I+           
Sbjct: 1164 AVLAGRNGEDQVALRPAGAFGRRLLPAPLDAQAPAQERAWTPRDGVLITGGVAGAAALVA 1223

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
            R       K   +           A    E    +A     +   +   S   T      
Sbjct: 1224 RWLAADGTKRIVLLAPDGP----AAPGGAELVAELAELGAEATVVDGVPSEPTTRQELAD 1279

Query: 400  RRVKLELTRFGINIDISAGI--PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            R     L    +    + G   PL+    + +  +L +A+   +            L   
Sbjct: 1280 RLAASGLRVRTVVHAGAPGDWAPLAELTPNELAEALSDAMGGADRLAE--------LCGL 1331

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
               +  +  +  A           +     L +    R A   +      W      ED 
Sbjct: 1332 EPDDPVVVFSSIAAVWGGGGHGARAAADAYLDAWARRRQAAGGHVAR-LAWGVWDGSEDP 1390

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            E A       L  + P       + +   +   +D  + TV                   
Sbjct: 1391 EAAGRAERQGLLALHPTPALAALRRTLDHSGDGTD--QGTVQAGDEGGDRGDVHAVIADV 1448

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
              E        ++       I A    W   +
Sbjct: 1449 HWERFVPLFTMARASRLFDEIPAARRAWQAAL 1480


>gi|229490963|ref|ZP_04384796.1| ATP-dependent DNA helicase [Rhodococcus erythropolis SK121]
 gi|229322079|gb|EEN87867.1| ATP-dependent DNA helicase [Rhodococcus erythropolis SK121]
          Length = 712

 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 58/539 (10%), Positives = 126/539 (23%), Gaps = 67/539 (12%)

Query: 28  GTLVENFRYDPLNPLLLA-SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86
            T+     +   +  + A  V     T RA  E+R    E+    S      ++      
Sbjct: 38  RTITRRIAHLVADGHVSAGQVLAVTFTARAAGEMRGRLRELGVGGSGPQVQARTFHAAAL 97

Query: 87  EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
            +            P            RL+      +      +   +        A+ I
Sbjct: 98  RQLKYFWPQVVGDTP-----------WRLLDRKFAVVSSAAARVGLSTSTESVRDLASEI 146

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA--SKYWTERLVELNA 204
             +K                ED      +      + A    ++    +    R  +   
Sbjct: 147 EWSKA----------SLIAPEDYPRAIAKIRREAPVDATKVAQVYAAYEELKARGQDGML 196

Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  +    A  EH       +      ++       P   R++       +   V+
Sbjct: 197 LDFDDLLLHTAAALEEHSTVADEFRERYRCFVVDEYQDVTPLQQRVLDAWLGDRDDLTVV 256

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D +     +   T       S        P+ ++ +L        E V         
Sbjct: 257 --GDANQTIYSFTGATPNYLLDFSRKF-----PEATVVRLERDYRSTPEVVS-------- 301

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
           +  R +  ++  +      +        +             +E D+E  EA+ +A A++
Sbjct: 302 LANRVIGAARGRIAGTRLQLIGQRAPGPEP----------EFMEFDDEPAEALGVARAIK 351

Query: 380 M--SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
              +      + A++      +   +  LT+ GI   +  G    T        + L   
Sbjct: 352 RLIAAGTPAAEIAVLYRINAQSEAHEQALTKLGIPFQVRGGEGFFTRTEVRQAVAALRQA 411

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
              +D           L +     + L     A+       N+        +        
Sbjct: 412 AGRDD-----------LPEGADNGEALVSLVRAVLAPLGLTNEEPSGTQARERWASLSAL 460

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
                  + H          +      +         VT  +   +            L
Sbjct: 461 VALTEEQLVHEPELTLTGLLQELTARAEARHPPTVQGVTLASLHAAKGLEWDAVFLVGL 519


>gi|206559483|ref|YP_002230244.1| putative exodeoxyribonuclease V beta chain [Burkholderia cenocepacia
            J2315]
 gi|198035521|emb|CAR51400.1| putative exodeoxyribonuclease V beta chain [Burkholderia cenocepacia
            J2315]
          Length = 1235

 Score = 43.4 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 97/897 (10%), Positives = 219/897 (24%), Gaps = 80/897 (8%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAG 234
            W  L A++L +A     ER       S       L  A   H      ++      +I  
Sbjct: 338  WLALIAEWLDMAPAELAERKRTRRVVSFDDLLANLYHALHAHPWLAETLRARYPAALIDE 397

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---TH 291
               + P    +   +     G  +    D       +      +     +  +       
Sbjct: 398  FQDTDPLQFAIFDRI--FAPGGPLFLVGDPKQAIYSFRAADLHTYLAARARASACYTLAV 455

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP-PDTSDMRNTDILENKIP 350
             Q S   ++D  +       R   +    Y      ++   P  D +D            
Sbjct: 456  NQRSTPAIVDACNRFFLSNPRAFVLDGLDYYAVRAGTRVRAPFVDETDPGPAGDFRVWAL 515

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---------KSALITADRNLARR 401
               +        +A   +  A  IA  +R + +   +           A++         
Sbjct: 516  PGGEGTLLKREAQAQAAQACAAEIARLMRGAREGRVRLGDTPLSPGDIAVLVQTHRQGSL 575

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            VK  L  +GI     A   + +T  +  L  +L AI    D   +   +           
Sbjct: 576  VKRVLATWGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLRRLRAALASDWFGLDAGA 635

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN---------THVPHWQSRL 512
             +     +           ++  +  ++     R+  ++             +   +  +
Sbjct: 636  LWRMEQGDGGAPPGASAADSADAMSWVERFSRYRLLWRERGFAVMWRTFTRELRIAERLM 695

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
            +  D E  V  ++H+ +      + +     T   L+              +  D +   
Sbjct: 696  AGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGGGEEAQLRLESDRNLVQ 755

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK---IEKSSTLF 629
                 + +G   + +F   +  G+  +  +    D      +           ++++   
Sbjct: 756  IVTVHKSKGLEYAIVFCPFLNDGALREPPSSALPDAREYHDEAGDAVLHYGCDDEAAAHA 815

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF- 688
                L  +      L+   L   V+       P+LS     +         +  A H F 
Sbjct: 816  ARQALREQAAERARLVYVALTRAVYRCYVVAGPYLSSRSTREARRSVLNWLVAGAGHAFD 875

Query: 689  --------EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
                    E A                   + +R  +       +               
Sbjct: 876  AWLDEPPDEAALEAAWRALAGGPVCVAPLPVPARRERVAAGHDASQTLAARHATRVLRDA 935

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
            W      +      +       +           +  +  D   + A  +          
Sbjct: 936  WRMASFSSLTASMAREEAGVAAVPDDELRPDHDALAAVTPDGELILADTVAAEPPDDDIL 995

Query: 801  KDPDRTDRGTLFHNIIT-------ELIKKRINKNTPEINHLMKQIIDSHFEKENLP---- 849
              P     G   H +         E   K       +     +  + +            
Sbjct: 996  VFPRGAAAGECLHRLFELSRFTEPESWHKAALGALHDRPVEAEPALAARLPAMMARLVDD 1055

Query: 850  -------PHIDIIWRH---LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH-- 897
                   P + ++         ++   F      + +    +  +    +A+E+  +   
Sbjct: 1056 VVHTELVPGMRLVDLDPAKRLDEMGFLFPAPSLDLMALRRLLVAHGYPDVALEAGTLAGF 1115

Query: 898  LTGFADRIDLLKSGFVDITDYKT---GDNPKK--------ETAQKLIDPQLSLEAAALKA 946
            + GF D I     G   I D+K+   G  P            A      Q  L   AL  
Sbjct: 1116 IKGFIDMIVEH-DGRFWIVDWKSNHLGTTPDAYGPRALDIAMADHAYHLQALLYTVALHR 1174

Query: 947  GSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
                ++        +A   Y+ ++          +     A   +   +  L  ++ 
Sbjct: 1175 YLRGRLPDYDYDTHIAGYLYLFVRGVRPGWRSGGEPAGVHARRPARALVDALDRMME 1231


>gi|41410190|ref|NP_963026.1| hypothetical protein MAP4092c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41399024|gb|AAS06642.1| hypothetical protein MAP_4092c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 619

 Score = 43.4 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 56/587 (9%), Positives = 120/587 (20%), Gaps = 134/587 (22%)

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           E  E      D +   I   +      +   G  +I +  +L     + +      +   
Sbjct: 13  ETAETLAAGGDALTDRIAQTLREWAGHSRERGVAAIFEAAQLLGMSNRVLGWQGGARHMT 72

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK--IEKSSTLFILG 632
                +   L+ L  ++            +W+        G   + +     ++ + I+ 
Sbjct: 73  -----DLAHLTQLLGEVAHREHHNLPALRDWLRRQRDERSGAPERNRRLDSDAAAVQIMT 127

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-------------NLKTAEK 679
              S+ L +  + L          +           +                 L   E 
Sbjct: 128 VFVSKGLQYPIVYLPFAFHRNTTDSDVVLFHDEDGTRCLHVGGKDSPDFKTVERLGRKED 187

Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR----G 735
               +   +      +  +        + P      L R    G     D  +       
Sbjct: 188 ASDDSRLTYVALTRAQAQVVAWWSPAYHEPNGGLSRLLRGRRPGEPVVPDRCEPAKISDA 247

Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPP------------------LEAQPRTYSFSEIKQ 777
                                P P PP                  ++   R  S+S + +
Sbjct: 248 DALARLREWEAAGGPVIEESVPAPAPPLSGVPVPARLENRHFHRGIDTGWRRTSYSGLIR 307

Query: 778 LINDPYAVYARRILKLDF----------------IPHFKKDPDRTDRGTLFHNIITELIK 821
                          LD                        P     GTL H ++     
Sbjct: 308 QAQPSGVGSEPEAAGLDDEVGDILLAPATSVGDVASPMADLPAGATFGTLVHAVLQT--- 364

Query: 822 KRINKNTPEINHLMKQIIDSH---FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
              +   P++   +   I  H   +     P  +      +               +  +
Sbjct: 365 --ADPFAPDLAAELTARIREHSVWWPVAATPEDMAAAMVPMHDTPLGPLAGGLTLRRIGL 422

Query: 879 EKIFVNIPAKMAIESIGIH----------------------------------------- 897
                 +  ++ +                                               
Sbjct: 423 SDRLCELDFELPLAGGDRRSAPPEVRLADLSPLLRAHLPADDVLACYADRLTDRSLGAEP 482

Query: 898 ----LTGFADRIDLLKSG---FVDITDYKTGD------NPKKETAQKL----------ID 934
               LTG  D +  +  G      + DYKT                +             
Sbjct: 483 LRGYLTGSIDAVLRIPDGAGHRYLVVDYKTNRLGDAQHPLTAADYDRPRMVEAMLHSDYP 542

Query: 935 PQLSLEAAALKAGSFSQIDCRKV----ANLFYIRLKQKFKIDCITND 977
            Q  L +A L      ++   +       + Y+ ++     D    D
Sbjct: 543 LQALLYSAVLHRFLRWRLAGYEPDRHLGGILYLFVRGMCGPDTPVRD 589


>gi|226305711|ref|YP_002765671.1| ATP-dependent DNA helicase UvrD2 [Rhodococcus erythropolis PR4]
 gi|226184828|dbj|BAH32932.1| probable ATP-dependent DNA helicase UvrD2 [Rhodococcus erythropolis
           PR4]
          Length = 718

 Score = 43.4 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 61/574 (10%), Positives = 133/574 (23%), Gaps = 61/574 (10%)

Query: 28  GTLVENFRYDPLNPLLLA-SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86
            T+     +   +  + A  V     T RA  E+R    E+    S      ++      
Sbjct: 44  RTITRRIAHLVADGHVSAGQVLAVTFTARAAGEMRGRLRELGVGGSGPQVQARTFHAAAL 103

Query: 87  EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
            +            P            RL+      +      +   +        A+ I
Sbjct: 104 RQLKYFWPQVIGDTP-----------WRLLDRKFAVVSSAAARVGLSTSTESVRDLASEI 152

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA--SKYWTERLVELNA 204
             +K                ED      +      + A    ++    +    R  +   
Sbjct: 153 EWSKA----------SLIAPEDYPRAIAKIRREAPVDATKVAQVYAAYEELKARGQDGML 202

Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
                  +    A  EH       +      ++       P   R++       +   V+
Sbjct: 203 LDFDDLLLHTAAALEEHSTVADEFRERYRCFVVDEYQDVTPLQQRVLDAWLGDRDDLTVV 262

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
              D +     +   T       S        P+ ++ +L        E V         
Sbjct: 263 --GDANQTIYSFTGATPNYLLDFSRKF-----PEATVVRLERDYRSTPEVVS-------- 307

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
           +  R +  ++  +      +        +             +E D+E  EA+ +A A++
Sbjct: 308 LANRVIGAARGRIAGTRLQLIGQRAPGPEP----------EFMEFDDEPAEALGVARAIK 357

Query: 380 M--SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
              +      + A++      +   +  LT+ GI   +  G    T        + L   
Sbjct: 358 RLIAAGTPAAEIAVLYRINAQSEAHEQALTKLGIPFQVRGGEGFFTRTEVRQAVAALRQA 417

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
               D +         L              N          +       L +LV     
Sbjct: 418 AGR-DDLPEGADNGEALVSLVRAVLAPLGLTNEEPSGTQARER----WASLSALVALTEE 472

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              +   +           +  A          +  L   K  +      + ++D T   
Sbjct: 473 QLVHEPELSLTGLLQELTARAEARHPPTVQGVTLASLHAAKGLEWDAVFLVGLNDGTLPI 532

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
              L +                    ++     +
Sbjct: 533 QHVLGDANSGADDVAVEEERRLLYVGVTRAREHL 566


>gi|262194305|ref|YP_003265514.1| hypothetical protein Hoch_1024 [Haliangium ochraceum DSM 14365]
 gi|262077652|gb|ACY13621.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
          Length = 387

 Score = 43.4 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 83/263 (31%), Gaps = 31/263 (11%)

Query: 767  PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--I 824
                S+S + +    P +     I       H     +    GT  H  +  ++++    
Sbjct: 1    MPRLSYSRLSRYEACPLSYRLHYID-----QHVADRGEPVRFGTAVHAALEHVVREHLAA 55

Query: 825  NKNTPEINHLMKQIIDSHFEKENLPP-HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
             +  P  +  +  +  + + +  L    +      L H+        E+ +   ++ + V
Sbjct: 56   ERCGPLSHERVAVLWQNAWTESGLSGLSLFREGLALLHRFVR-----EQGVVDHLDVLAV 110

Query: 884  NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
                ++ +   G  + G+ DR+D +    VD+ DYKT               Q+SL   A
Sbjct: 111  EQEFRITV--GGFEVLGYLDRVDRVDDETVDVVDYKTNRQLFTRDELDG-SLQMSLYQLA 167

Query: 944  LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
             +    S     K   L +  L+   +       +          ++ +  +  +    +
Sbjct: 168  AQ----SLWPWAKKVRLTFWMLRHGVQQRTERTTEDL--------EATRRYVGTIGRAID 215

Query: 1004 GEQPFISHLRLSEKSNIQSEYDH 1026
                + + L     +    ++  
Sbjct: 216  EASDYPARLN---SNCTWCDHKQ 235


>gi|317123313|ref|YP_004097425.1| carbamoyl-phosphate synthase L chain ATP-binding protein
            [Intrasporangium calvum DSM 43043]
 gi|315587401|gb|ADU46698.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
            [Intrasporangium calvum DSM 43043]
          Length = 1861

 Score = 43.4 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 44/401 (10%), Positives = 99/401 (24%), Gaps = 19/401 (4%)

Query: 60   LRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIW 119
            L      I   +    P I     +++         + N       + RL+   +L    
Sbjct: 822  LEEAVFRIFLAQQRTSPEIALATSLLQRWLGEPTPEARNAAAARDTLDRLVLATQLRFPV 881

Query: 120  RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE----EKKWEDLH---AL 172
               L   ++  + E P+      +    +   L  +    E          E +    A 
Sbjct: 882  IGDLARSVRFRWFEQPMVDAERQSVLAGVRDQLESLTAEAERVGDEGGATPETVSPDYAA 941

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA--EHLMKGTKGPI 230
              ++          FL        + +        V  +      +    H       P 
Sbjct: 942  GIDELAAIPEQIVRFLAERLDRPDDSIPRHEPMIEVLIKRHYHEHDLHGPHRFHAGDRPF 1001

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT--EKSTNITSSNTTY 288
             +A  T        L ST+ +    A     LD  +   +W+         ++       
Sbjct: 1002 AVADYT-LDGRPTHLTSTIGDVAELAP-GSDLDVSVGNDVWSRAEQHHAVVDLYLRWRDQ 1059

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
               P+   A L   L                       +      P   ++    ++   
Sbjct: 1060 PADPEEVSATLATRLKALDWTRDVRRVAVAVTGNHDQPVGYFTFRPQGEELVEDRLVRGV 1119

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
             P + +      L + +  R EA            +N     ++ +          +L  
Sbjct: 1120 HPMVGRRLQLWRLRDFEVTRLEAPEDVFLYECVARDNADDRRIVASA------QVRQLVV 1173

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
               +    +G+P +    ++ L ++           +   +
Sbjct: 1174 VRDDDGRVSGLPQAERAIANCLDAIRRVRASRGSAGSRLDM 1214


>gi|118464110|ref|YP_883291.1| ATP-dependent DNA helicase [Mycobacterium avium 104]
 gi|118165397|gb|ABK66294.1| ATP-dependent DNA helicase [Mycobacterium avium 104]
          Length = 743

 Score = 43.4 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 51/489 (10%), Positives = 114/489 (23%), Gaps = 45/489 (9%)

Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
           ++LA  I+  +      E+  A          L AA         +       +  + + 
Sbjct: 185 RDLAGEIEWAKASLIGPEEYPAAVAAAGRDIPLDAARVAG-VYAAYEALKARGDHVTLLD 243

Query: 210 YQIALMRAEAEHLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
           +   L+   A                   ++       P   R+++      +   V+  
Sbjct: 244 FDDLLLHTAAAIENDPAVAEEFRDRYRCFVVDEYQDVTPLQQRVLAAWLGDRDDLTVV-- 301

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            D +     +   + +     S        P  ++ +L        + V     V     
Sbjct: 302 GDANQTIYSFTGASPRFLLDFSRRF-----PDATVVRLERDYRSTPQVVSLANQVIAAAR 356

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
           GR               +                       E  +E  EA ++A ++   
Sbjct: 357 GRVAGSKL--------HLVGQRPPGPVP----------TFHEHPDEPAEAAAVAKSIARL 398

Query: 382 LD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
           ++      + A++      +   +  LT  GI   +  G               L    +
Sbjct: 399 IESGTPASEIAVLYRVNAQSEIYEEALTEAGIPYQVRGGEGFFNRQEIKQALLALQRAAE 458

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                A A     PL                  +    G +       L++L        
Sbjct: 459 REGEDARAE----PLPAVVRAVLEPLGLTADEPV----GTRARERWEALRALAELVDDEV 510

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                +           +  A          +  L   K  +      + ++D T     
Sbjct: 511 ARRPQLDFAGLLTELRMRADARHPPVVQGVALASLHAAKGLEWDAVFLVGLADGTLPISH 570

Query: 560 CLQNVCLDEH-RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
            L +    E   +   L +    +  + L        S     + +    +  +      
Sbjct: 571 ALAHGADSEAVEEERRLLYVGITRARTHLALSWALARSPGGRQSRKPSRFLNGIAPQTRA 630

Query: 619 KPKIEKSST 627
           +    +S  
Sbjct: 631 EAAPTRSRR 639


>gi|31791812|ref|NP_854305.1| exonuclease V subunit beta [Mycobacterium bovis AF2122/97]
 gi|31617399|emb|CAD93509.1| PROBABLE EXONUCLEASE V (BETA CHAIN) RECBA [FIRST PART]
           (EXODEOXYRIBONUCLEASE V BETA CHAIN)(EXODEOXYRIBONUCLEASE
           V POLYPEPTIDE) [Mycobacterium bovis AF2122/97]
          Length = 897

 Score = 43.4 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 60/710 (8%), Positives = 153/710 (21%), Gaps = 120/710 (16%)

Query: 185 ADFLKIASKYWTER---LVELNASSPVGYQIALMRAE---AEHLMKGTKGPIIIAGSTGS 238
             F     +    R   L     +  +      + A    A   M+     +++     +
Sbjct: 208 LRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPARDRMRERWRIVLVDEFQDT 267

Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
            P   R++    +  +  I++   D       +      +    +               
Sbjct: 268 DPMQWRVLERAFSRHSALILI--GDPKQAIYGFRGGDIHTYLKAAGTADAR--------- 316

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
               L +     + L      +  R   +  + +    +D  +        P        
Sbjct: 317 --YTLGVNWRSDRALVESLQTV-LRDATLGHADIVVRGTDAHHAGHRLASAPRP--APFR 371

Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
           + +++                                  L R +  +L      +  S  
Sbjct: 372 LRVVKRHT------------------LGYDGTAHVPIEALRRHIPDDLAADVAALLASGA 413

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
                 + ++ +  ++                  P    G  + + S+A           
Sbjct: 414 TFAGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAA---------- 463

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                 +  L++    + +          +    +E        L D +   +     + 
Sbjct: 464 ---KDWLCLLEAFDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHA 520

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
            ++       +              +     R L     E +   L+ +   + E     
Sbjct: 521 RHRGVAAVFQAA------------QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRE 568

Query: 599 KANAIEWIDIITRLIDGETVKPKI-----EKSSTLFILGTLESRLLNFDTLILGGL---- 649
           +       D + R        P+        ++ + I+    ++ L F  + L       
Sbjct: 569 RLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRN 628

Query: 650 ---------NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
                    ++                 ++   L   E         +      +  +  
Sbjct: 629 VRSDDILLYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVA 688

Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT------------------ 742
                 +        L R    G +   D    R      W                   
Sbjct: 689 WWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVI 748

Query: 743 ---RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI----------------KQLINDPY 783
                L+     P ++       ++   R  S+S++                 +      
Sbjct: 749 GARSSLEKPVPVPGFEVRHFHRRIDTTWRRTSYSDLVRGSEAVTVTSEPAAGGRADEVEI 808

Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
           AV+A      D        P     G+L H ++        +        
Sbjct: 809 AVFAAPGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQ 858


>gi|78186859|ref|YP_374902.1| exodeoxyribonuclease V, beta subunit [Chlorobium luteolum DSM 273]
 gi|78166761|gb|ABB23859.1| Exodeoxyribonuclease V, beta subunit [Chlorobium luteolum DSM 273]
          Length = 1203

 Score = 43.4 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 93/884 (10%), Positives = 201/884 (22%), Gaps = 120/884 (13%)

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
            + + + L +L  +        L                +I     + P    +   +   
Sbjct: 342  RLFDDLLTDLYLALEAEGGGRLGEVLRSSYPAA-----LIDEFQDTDPVQYEIFRMIYAG 396

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKS----TNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
             +   +    D       +      +          +  ++    +  A LL        
Sbjct: 397  SD-LPLFLIGDPKQAIYSFRGADLFAYLKAAASVDGDCRFTLEKNWRSAPLLLEGFNTLF 455

Query: 309  DVKRLGNVSNEMYGR--SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD---VALIE 363
                   +   +  R  S        P    D R+ + L+  + + +   +    V   E
Sbjct: 456  LKGPNPFLYPGIAYRPVSSGGGGPRDPFTHEDDRHPEPLQLWLLDARDAKNGCLTVEAAE 515

Query: 364  ADNEREEAISIAIALRMSLDENKK---------KSALITADRNLARRVKLELTRFGINID 414
                   A  I   L  +     +           A+I      A +V   L   G+   
Sbjct: 516  EMAAAAVAGEIVRLLGDARAGKARIGDVPLAASDMAVIVRTHLQAAKVHAALRARGVPAV 575

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
            + +   +  +  +  +  LL A+   +    I + +   +            A     + 
Sbjct: 576  MQSDRSVFLSPVAGEVLLLLEALLHPSSEGRIRSALVTTILGRTGNVIAALSADGEEWIA 635

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
             LR       +   +  +    A  +         +R   +     +L    +L      
Sbjct: 636  CLRDFAQWNQLWRTQGFMAMTRAFMRKEGVRRRVLAREGGQRTLTDILHCFELLHQHEHT 695

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                        +    D T         +  DE           +G     +F   +  
Sbjct: 696  SNAGPEALLAWFSERCLDTTGSEDAYQMRLETDEAAVKIVTVHVSKGLQYPLVFCPYLWK 755

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
            GS        + D       GE V+          +L   E  +     L    L     
Sbjct: 756  GSTSTKEVAAFHD-----ASGEAVRDFGSPGFPDGMLRAGEEAMAEDLRLFYVALTRAEH 810

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
                    F+S  +   ++      + G++    E   G    +             AS 
Sbjct: 811  RC-----CFISARVSGGVSALNYLLHAGESVQ--ERVAGAPERLL--------EAMEASS 855

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
             L R+         ++    G   L     L          +      +    R +S   
Sbjct: 856  PL-RMEADLRALAEESRGAVGFRLLTQDDLLRAA---LPAPKDDGSGAIGQNLRRFSGRI 911

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDR---------------------TDRGTLFH 813
                    +  ++R+  +   +P   +                            G   H
Sbjct: 912  DSSWRVSSFTSFSRQGHRPQELPDRDETASGSLPQDTVSTEDAEGIFAFPRGAKAGLFMH 971

Query: 814  NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII------------------ 855
             I   +       +   I  L+   +  +  +      +  +                  
Sbjct: 972  EIFEHI--DFSAPDPLAIRKLVDTSLQRYGYEPKWSDAVTGMVEGVLQMPLGEGEDPFRL 1029

Query: 856  -------WRHLFHKISH-SFLEHEEK----IQSSIEKIFVNIPA---KMAIESIGIHLTG 900
                   W          S L+ E       +  +     +       +  +     L G
Sbjct: 1030 GALQPGSWVSELEFFMPMSLLQTEALQNPLRRHGLMPEGADYRKLADSLEFQPATGMLLG 1089

Query: 901  FADRIDLLKSGFVDITDYKT----GDNPKKET-------AQKLIDPQLSLEAAALKAGSF 949
            F D +     G   + D+K+                    +     Q     +AL     
Sbjct: 1090 FMDMVFE-AGGRFWLLDWKSNHLGNRASDYAQDGMEAAMEEHRYHLQYLFYLSALNRHLT 1148

Query: 950  SQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989
             ++           + Y+ L+        T   +      L E+
Sbjct: 1149 LRVPGYTYRTHFGGVLYVFLRGVDGKGRGTGLYRVRPPAGLIEE 1192


>gi|319786294|ref|YP_004145769.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464806|gb|ADV26538.1| DEAD/H associated domain protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 1498

 Score = 43.4 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 73/892 (8%), Positives = 192/892 (21%), Gaps = 60/892 (6%)

Query: 47   VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE-----------KFTADLLL 95
              ++V T+R  +        + G  +          ++  +              A   L
Sbjct: 302  TLVFVNTRRMAERAAFHLGRLLGHDAVATHHGSLSKELRLDAEQKLKRGQLQVLVATASL 361

Query: 96   SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL--- 152
               L+    ++       R I  +  +       +       L  +    +     L   
Sbjct: 362  ELGLDIGDVDLVCQFGSPRSIAAFLQRAGRSGHHVGGVPRARLFPTTREDLVECAALLDC 421

Query: 153  --ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210
                 +D +   E   + L      +         +  +   + W    +E      V  
Sbjct: 422  VRRGELDALRVPEAPLDVLAQQIVAEVAAREWDEGELFECLRRAWPYAALERGRYDEVVA 481

Query: 211  QIAL----MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
             +A      R      +        + G  G+         T+    + ++VL       
Sbjct: 482  MLAGGFSDRRGARAGWVHRDAVHHRLRGREGARRVATMSGGTIPETGDYSVVLE-PQSSF 540

Query: 267  PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326
               +      +S          +++    +      ++  +     +     E  GRS  
Sbjct: 541  VGTVNEDFAVESMAGDVFQLGNTSYRILRVEPGKLRVEDAQGQPPSIPFWLGEAPGRSDE 600

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
            +S                 E+   +                R+E      A R  +D   
Sbjct: 601  LSLGVSRLRAEVAAWLAGTEDGAEHPVTLAPGRIAAAQRWLRDEVGLDEAAARQLVDYLG 660

Query: 387  KKSALITADRNLARRVKLEL------------TRFGINIDISAGIPLSTTLHSSILTSLL 434
                 + A       V                + +G  ++ + G+ L             
Sbjct: 661  ASLVALGAMPTQETLVLERFFDETGSTHLVVHSPWGSRLNRAWGLALRK----RFCRQFN 716

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
              +       AI   +    +           + +A +++           +  +     
Sbjct: 717  FELQAAATEDAIVLSLSTSHSFPLAEVARYLHSSSAADVLVQALLDAPLFAVRWRWNAGT 776

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
             +A  + +            + ++L   +    + C+  +V  +   +      ++ D  
Sbjct: 777  ALALPRFSGGKRVPPQLQRMKSEDLLATVFPDQVACLENIVGEREVPDHPLVAQTLHDCL 836

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
               +     + +    +   +          S  +                ++       
Sbjct: 837  HEAMDLDGWLEVLRGLESGRIAVVARDLAAPSPIAAEAINARPYAFLDDAPLEERRTQAV 896

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                    E +S L  L       +  D        +G+    T          + + + 
Sbjct: 897  QSRRYADPESASDLGRLDAEAIEQVRVDAWPRAHAADGMHEVLTGLGFLTEDEARREAHW 956

Query: 675  KTAEKYIGQAAHD----------FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
                + +                +        L+                   R+     
Sbjct: 957  PALLRVLADEGRATSVEAKGQQWWVAVERLPQLLALHPQANQEPVPRVPEEFARVPWSTE 1016

Query: 725  TDFFDNLKKR-----GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                  L+ R               L                   A    ++    +Q  
Sbjct: 1017 DARVALLRSRLTALGPVTVTALAASLALPPSAIEQALLALQTQGYAMQGRFTPGAREQEW 1076

Query: 780  NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
             + Y +     L L  +    +     D        + E  +            L   + 
Sbjct: 1077 CERYLLARIHRLTLKRLRREIEPVAPRDFMRF----LFEWQRVAPEARVSGPEALADVLA 1132

Query: 840  DSHFEKENLPPHIDIIWRHLFHKISHSFLEHE----EKIQSSIEKIFVNIPA 887
                 +   P     I        + ++L+ +      + + +         
Sbjct: 1133 QLEGYEAPAPAWEAEILPARVRDYASTWLDDQCTAGRTLWTRLRAAGSEAEG 1184


>gi|289582055|ref|YP_003480521.1| hypothetical protein Nmag_2398 [Natrialba magadii ATCC 43099]
 gi|289531608|gb|ADD05959.1| hypothetical protein Nmag_2398 [Natrialba magadii ATCC 43099]
          Length = 863

 Score = 43.4 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 53/608 (8%), Positives = 137/608 (22%), Gaps = 34/608 (5%)

Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT----KGPIIIAGSTGSIP 240
              L   +  + + L E N +         + A     ++         +++        
Sbjct: 203 LRELADVNASFHDHLAERNLAEQAQTIERAIAALEREAIRERIEREFDAVLVVEYEECGD 262

Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                +  +    N  ++    +          +               T       +  
Sbjct: 263 LDREYLRALTR--NVDLICVAEEHASIERTKTEVGSVRRFADELEIVDHTADAALERETD 320

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
               +  +                +              R  +  E+  P +    +   
Sbjct: 321 AIPGVASDGGTAATQPDTVSEPGRVGQPFGAFLATGRPTRRGENGESAEPEVHGTTTAAR 380

Query: 361 LIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISA 417
           +I      ++  ++A  +     E     +  A++             + +       SA
Sbjct: 381 VISEPTLDQQVETVANEIEYLRQEQGLEYEDVAVLLRSIGNPAPRVRRVLQHAGVPTASA 440

Query: 418 GI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
           G+  L   L    L +L        +        + P       ++ + R   +  L   
Sbjct: 441 GVNGLEQDLAVRELHALAQYHIDDRERAYELLAARVPDLTEDLVQRCVVRNSVSKSLKRW 500

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
               +    +  ++  +D     +N + +      + E+D  LA   +  +      +  
Sbjct: 501 IVTTDLKRRIAEEADPIDAREQFRNVSRLLSIAEFVDEQDI-LAGDWIQFVTMLERAITY 559

Query: 537 YKTNKNSTCGNLS----------ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
                ++    +           +          L NV   E+     L        +  
Sbjct: 560 DAPYAHTAEVAVPEGGVTVGDVGLVKHDSRRAVFLLNVVDGEYPGSEPLSPLFPTAWIKR 619

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETV--KPKIEKSSTLFILGTLESRLLNFDTL 644
           +      T    +A A  +  +    I                L I        L F T 
Sbjct: 620 MDDYPAVTNPSPEAVAETYATVDVEEITDNAFERYHAERTRRQLAIGARAAEEHLYFCTY 679

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
                + G     +     +     S L+L             + + + +  ++      
Sbjct: 680 RQTDGSVGRLQHRSRYLHAIDEHPHSALSLADLGGADVPDRDLYTLGSASAEIL------ 733

Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
                +     L+ +     T     L+   +      R L+ +               +
Sbjct: 734 -----SQPWNALETVQAEASTGGEVALESTEETLAAIQRVLEESDDVDLRFERAVETQFD 788

Query: 765 AQPRTYSF 772
                   
Sbjct: 789 LARGAIRP 796


>gi|145596251|ref|YP_001160548.1| UvrD/REP helicase [Salinispora tropica CNB-440]
 gi|145305588|gb|ABP56170.1| UvrD/REP helicase [Salinispora tropica CNB-440]
          Length = 719

 Score = 43.4 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 57/593 (9%), Positives = 135/593 (22%), Gaps = 64/593 (10%)

Query: 28  GTLVENFRYDPLNPLLLASVTI-YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86
             +     +  L   +LA   +    T RA  ELRS    +           ++      
Sbjct: 41  RAVTSRIAHRTLTGEILARHLLAVTFTARAAAELRSRLTALGVPGV----QARTFHAAAL 96

Query: 87  EK---FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            +   F   LL    +   + +  RL+ LA                       +  +   
Sbjct: 97  RQVRYFAPRLLAGRAMPELLDSKVRLVTLA-----------------------AAKVGIR 133

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
           +     ++LA  I+  ++   +  +                A  +      + +      
Sbjct: 134 SDRAGVRDLAGEIEWAKSSLVEPGEYVVAAARALRDTPYEPAR-VADVFAAYEKAKRAGG 192

Query: 204 ASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                    A +    +H       +      ++       P   RL+       +   V
Sbjct: 193 VIDFEDMLRAAIWGIEDHPDVADQVRAQYRHFVVDEYQDVNPLQQRLLEAWLGGGDDLTV 252

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
           +          I++     S+ +      Y       L +              +   + 
Sbjct: 253 VGDA----SQTIYSFTGATSSYLVDFPRRYRGATVVRLVRDYRSTPQVVGLANSVIAPAR 308

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
               R  +      PP           E             AL++A     E        
Sbjct: 309 GAEARLRLELVGQRPPGPEPELRIFTDEPAEAAAVAARCR-ALVDAGTPARE-------- 359

Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                      A++      +   +  LT   +   +         +        L A  
Sbjct: 360 ----------IAVLFRTNAQSEAYEEALTEAEVPYQVQGAERFFERVEVRQAMVALRAAT 409

Query: 439 K---LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
           +       +  A +       +         A            + + +      ++   
Sbjct: 410 RSLPGGTPLPAAVVEALAAVGWAPDTPPAGGAARERWAALAALVQLAEEYAANAPVLPIG 469

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            A            +      +  A  +       +  L + K  +      + +++ T 
Sbjct: 470 PAAAVERPATLADFTDELAR-RAAAQHVPTVEGVTLASLHSAKGLEWDAVFLVGLAEGTL 528

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            T        ++E R+L  +      + L   ++     G   +        +
Sbjct: 529 PTTYAKTPEQVEEERRLLYVGITRAREWLWLSYASARSPGGRPRRPCRFLPRL 581


>gi|111225382|ref|YP_716176.1| putative ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111152914|emb|CAJ64662.1| Putative ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 769

 Score = 43.4 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 56/509 (11%), Positives = 125/509 (24%), Gaps = 54/509 (10%)

Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
           R +  +   +          S +      A  + L+ + A++ D   T E +W     + 
Sbjct: 137 RQLQHFWPAVAGGPLPRPESSKIPNMARAAGRLRLSPDRAELRD--LTAEVEWAKASLVA 194

Query: 174 NEKYGMWWLLAADF-------LKIASKYWTERLVELNASSPVGYQIALMRAEAEH----- 221
              Y                 +      + E   E          +       EH     
Sbjct: 195 PADYARMAAAGGRETATPAPTVARLYAAYEEVKREAGVVDMEDLLLLTAAMIEEHDWVAT 254

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
            ++     +++           R++       +   V+   D H     +   + +    
Sbjct: 255 EVRSRYRHLVVDEYQDVNALQQRVLEAWLGDRDSLCVV--GDPHQTIYSFAGASPRYLLD 312

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                    HP  ++ +L+                         V+  +      +    
Sbjct: 313 FPRR-----HPDAAVVRLVRDYRSTP-----------------QVVGLANRLVQAAPGTR 350

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSALITADRNLA 399
                   P           +E D+E +EA ++A  +R   +      + A++      +
Sbjct: 351 LVAAAPDGPPPV-------WLECDSEADEAAAVASRIRTLIARGTPASRIAVLYRINAQS 403

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
              +  +   GI   +  G              LL A  +  D    A L          
Sbjct: 404 EAYEAAIGAAGIAYLVRGGEKFFARTEVVAALRLLRAALRSADTDRPAGLADT--VADVL 461

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
              +    + +    A R         +L +L                 +      D+  
Sbjct: 462 GALHWRADRPSAGSGAER-----EQWENLAALHRLAADLAARAPQAGLAEFVAELGDRVT 516

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
                      ++ L   K  +      + ++D T   V       + E R+L  +    
Sbjct: 517 HEHQPTVEGVTLSTLHAAKGLEWDAVFLVGLTDGTLPLVHAKTAEQIAEERRLLYVGVTR 576

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDI 608
               L   ++     G   +  +    D+
Sbjct: 577 ARTHLVLSWALARADGRRSRRPSRFLDDL 605


>gi|262195926|ref|YP_003267135.1| oxidoreductase, iron-sulfur binding protein [Haliangium ochraceum
           DSM 14365]
 gi|262079273|gb|ACY15242.1| putative oxidoreductase, iron-sulfur binding protein [Haliangium
           ochraceum DSM 14365]
          Length = 974

 Score = 43.0 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 54/550 (9%), Positives = 112/550 (20%), Gaps = 26/550 (4%)

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
             A V+  LD      + N +                     L  L              
Sbjct: 200 GAAEVVLALDADFTAGMPNALRWAREFAAGRRPRGPELRMNRLYALETAPSPTGSLADHR 259

Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
             V+     R        +  D         L   + +                  EA  
Sbjct: 260 LAVAPSRMPRLAAALLRLIAADAPADALPPALVRALVDAAPASDG--------SAGEAAW 311

Query: 374 IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
           IA   R  +    + + L+   ++        L         + G  L  +  + I    
Sbjct: 312 IAAVARDLVRHRGRCAVLVGPQQSA---TTHALAHLVNLALGNVGRTLRLSEPALIAPLG 368

Query: 434 LNAIFKLNDFMA-IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
             A     D  A     +        +         +ALE V  R +   Y     +   
Sbjct: 369 PGAAELCADMRAGRVDTLVIVDCNPVYSTPAALDFASALERVPTRVHLGLYADESAQRCH 428

Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
               A     +         +    +  +  +      I  L  +   +      L    
Sbjct: 429 WQLPAAHPFESWGDARAYDGTASLVQPLIRPLYDGRSSIELLAAFAGEQAPDGHELVRGF 488

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
           W +       +    +         +      +   S      +   ++A+  +   TR 
Sbjct: 489 WRQRLAADASSPASSDSIWHWERHLQRGFVADTQAASAAPTLAADAGSHALAALASATRA 548

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                                        +   L  L + +          L+    + L
Sbjct: 549 GADAAADTLELSLPP----SPTVHDGRYSNNGWLLELPQPLTKLTWENAALLAPKTAARL 604

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
            L++ E                  +         +          R     G +     +
Sbjct: 605 GLRSGEMVR------LTRGERALEVPALVVPGHADGAVTLHLGWGRQ----GAESLARGR 654

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                 L  T     +         +         RT + ++ ++  +           +
Sbjct: 655 GVSGYLLQATPAGAESGDAAGAPVLRVALRATGSERTLAITQHERSQHGRELALQLTRAQ 714

Query: 793 LDFIPHFKKD 802
           L   P F   
Sbjct: 715 LAERPDFAAA 724


>gi|330823469|ref|YP_004386772.1| tetratricopeptide TPR_2 repeat-containing protein [Alicycliphilus
            denitrificans K601]
 gi|329308841|gb|AEB83256.1| Tetratricopeptide TPR_2 repeat-containing protein [Alicycliphilus
            denitrificans K601]
          Length = 1267

 Score = 43.0 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 62/660 (9%), Positives = 131/660 (19%), Gaps = 24/660 (3%)

Query: 193  KYWTERLV-ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL--MSTV 249
              W   L              AL                ++            +  +   
Sbjct: 398  AAWQAVLRLAPGQFDDAALVQALRHQLRSRSGDPRLMRALVDAQERLGEPQPAIDYLRQH 457

Query: 250  ANHPNGAIVLPGL-----DCHIPTAIWN--TITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
            A  P    +L  L        +    W              +        Q+   +L   
Sbjct: 458  AQDPEALELLAQLAERAGQPDLALQTWRQLLADPAQITPERAMHAAVLALQHRQPELGLQ 517

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                 +D       +     R           D   +     L +        +  +  +
Sbjct: 518  WLQAVQDHPPASAEAAAELWRFTGDLARSRARDQLAIAAYRKLVDAQHADVADYDALIGL 577

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALIT--ADRNLARRVKLELTRFGINIDISAGIP 420
               ++  EA  +A+      DE +     +T  + RN        L +     D +    
Sbjct: 578  LQQDQPLEAAKVALLAWQQHDEPRHLIEALTLYSSRNQWNEFAHALDQLDPTPDAARHSL 637

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG-- 478
                     L  +         F       +  LA               L         
Sbjct: 638  ARMRRSGQFLRLVGGYHHNAGRFAEARQYYEEGLAIDPASSDMRQALLWLLIDSNDAASI 697

Query: 479  ----NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                  +       + L     A  +  +       R               ++     L
Sbjct: 698  RRLLAAHEQAWSADEDLHEALAAAYQALSLPQVALHRYLSPHVAEREGDFLWLMNYADAL 757

Query: 535  VTYKTNKNSTCGNLSIS--DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
               +    +      +    W +              R L     E   +   +    + 
Sbjct: 758  EQNQEADRAWRLRRHLLSQQWQEGRNGRRLTPAQARQRWLTEEGLEATQRVARARLILLQ 817

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG-TLESRLLNFDTLILGGLNE 651
              G   +    E + +      G +          L   G     R   +          
Sbjct: 818  RPGDPAQEVLRELLRLDRDAQGGYSNAAAETAIGWLQDAGEYTAERGFLWHQYARSRSLR 877

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR---HLIYTRSLRENNI 708
               P        L+   ++       E       +D            L  + +      
Sbjct: 878  TNRPLWAEITVALAEDDKAAAGQLLQEFDERLPRYDRVNTAAAVGDIRLAQSAAFETQES 937

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                +    +L                   L    +     +      P+    L+A   
Sbjct: 938  QPDDNPLHLQLTDNLLAFSDHAGMLSRHSDLGAIDEDQAEARLHLAISPRLSLDLDASRI 997

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
                +   QL + P    A  +L+        +    + RG      ++   ++R++   
Sbjct: 998  QRRVTAPDQLRDAPGEDIAGALLRWGHADGETRLRVASRRGYADTTPLSIEHEQRLDNRL 1057


>gi|326778258|ref|ZP_08237523.1| Protein of unknown function DUF3686 [Streptomyces cf. griseus
            XylebKG-1]
 gi|326658591|gb|EGE43437.1| Protein of unknown function DUF3686 [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1691

 Score = 43.0 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 67/611 (10%), Positives = 143/611 (23%), Gaps = 20/611 (3%)

Query: 20   EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79
              +  ++ G  + +          +A V       RA  + R   +     ++       
Sbjct: 648  TTVTDVVAGLDIGDATVRTSILERIAEVLGGANRARATLDGRRRELLSKEGRAEFAAEFA 707

Query: 80   SLGDVVEEKFTADLLL---SYNLNPPVSNIQ----RLLELARLILIWRNKLPDIIKDLYP 132
             LG  V     A          L   +  ++    R  E    +     +  ++ +    
Sbjct: 708  LLGQAVTGALAAAGTPESCDEQLARLLLQLENLESRFAEFDDFLAELAERRTEVYEAFSA 767

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA----LKNEKYGMWWLLAADFL 188
                        A  LA +   +++ I       EDL A      ++         AD L
Sbjct: 768  RKQTLQDERARRAERLAGSAGRVLETIARRVSSLEDLDAVHTYFASDPMVAKVRRTADEL 827

Query: 189  KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            +        R  EL+       Q A         +    G +I  G       T     T
Sbjct: 828  RELGD--PVRAEELDGRLKAARQEAGRALRDRTELYADGGSVIRLGRHRFAVNTQPFDLT 885

Query: 249  VANHPNGAIVLPGLDCHIP---TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
            +     G +       +        +         +  S        ++  A+LLD    
Sbjct: 886  LVPSGEGLVFALTGTDYRAPVTDPAFAAARSYGEQLLPSENAAVYRAEHLAARLLDEHGA 945

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
             R     L         R                                 + +    + 
Sbjct: 946  VRLGS--LPEAELRRLVRESAAEAYDEGYTRGVHDEDAAAILAALLRLHAEAGLLRHRSA 1003

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
                     A      L  +  + A+  A           + R       + G P     
Sbjct: 1004 VRAAAQHFWAYDADEPLRTSWSRRAVSLARARDTFGSAPAIARLREEWAAAIGSPSPAAP 1063

Query: 426  HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
              ++   L   +        + + V+  LA F       + A++   L   R  +     
Sbjct: 1064 GHAVAAYLFEELTTGPAGFVVGSSVRAFLAAFHRAVGPDAYAEDLAALGDDRAARRQLVE 1123

Query: 486  MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA--VLLVDHILQCITPLVTYKTNKNS 543
              L        A   +          L  E +  A    L + +   +           +
Sbjct: 1124 GWLAPYAETTGAGLGDGDLAEAVAVELCPELERYACDAPLTERLEGLLGDHPRVAGGALT 1183

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
               +  ++   +     +      +  +   +  E     L     +++      +    
Sbjct: 1184 VRIDELLARTAEFRDVTVPGFRAYQRLRTSLVTAERGRLRLDDHRPRVMSAFVRNRLLDE 1243

Query: 604  EWIDIITRLID 614
             ++ +I   + 
Sbjct: 1244 VYLPLIGDSLA 1254


>gi|146282218|ref|YP_001172371.1| chromosome segregation SMC protein, putative [Pseudomonas stutzeri
           A1501]
 gi|145570423|gb|ABP79529.1| chromosome segregation SMC protein, putative [Pseudomonas stutzeri
           A1501]
          Length = 1162

 Score = 43.0 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 58/557 (10%), Positives = 145/557 (26%), Gaps = 39/557 (7%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL- 202
           +   LA+    + D         ED   L+ ++      L  + L   ++   ERL +L 
Sbjct: 411 SLERLAERQRRLDDERALLAADPEDRAMLELDEQLAASELDLEALAAVAEELNERLEQLR 470

Query: 203 --------------NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS--IPATARLM 246
                              +  +IA + A  +  M+  KG        G    P  A  +
Sbjct: 471 DELQQATRAQQQAQGELQRLNGRIASLEALQQAAMEPGKGVAEWLREQGLEQRPRLADGL 530

Query: 247 STVANHPNGAIVLPGLD------CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
                       + G D                  + + N+ S+       P   L ++ 
Sbjct: 531 RVEPGWELAVETVLGADLQAVLLDDFAEVELAGFQQGALNLVSAPRGGDRRPGALLERVE 590

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV- 359
             LD+           S E                + D         ++    +  S V 
Sbjct: 591 SALDLSPWLGHVRPVESLEHALAERPSLAEGESLVSRDGYWVGRHFLRVRRASEAESGVL 650

Query: 360 ------ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
                   + A+ +  EA   A+  R++    ++       +    ++ +       +  
Sbjct: 651 ARGQELQRLLAERDEREASLAAMEDRVTALSGEQSRLEGERELQRRQQQEEARKHSDLKA 710

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            +SAG          +         +L +      +    L +     +           
Sbjct: 711 RLSAG----HARLEQLALRRRRLEEELAEQQEQREIETEQLGEARLQLQEALETMAQDTE 766

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
                  +   I +    +       K++ H    +        E     ++ + Q    
Sbjct: 767 QRETLLASRDGIRERLDRIRQDARQHKDHAHQLALRVGSLRAQHESTRQALERLEQQFE- 825

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
               +  +      L++ +           +     R++      +  +       + + 
Sbjct: 826 ----RAVERREQLTLNLEEGEAPLEELRMKLEELLERRMGVEDELKHARLALEDADRELR 881

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                +  A +   ++   ++ + +  +        +   L+    +   ++     +  
Sbjct: 882 DAEKRRTQAEQQAQLLRGQLEQQRLDWQGLSVRRKALQDQLQEDGYDLHGVLGTLPADAS 941

Query: 654 WPKNTAKNPFLSRVMQS 670
            P   A+   LS+ +Q 
Sbjct: 942 EPSWEAELERLSQRIQR 958


>gi|306835518|ref|ZP_07468532.1| excision endonuclease subunit UvrD [Corynebacterium accolens ATCC
           49726]
 gi|304568575|gb|EFM44126.1| excision endonuclease subunit UvrD [Corynebacterium accolens ATCC
           49726]
          Length = 684

 Score = 43.0 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 45/434 (10%), Positives = 112/434 (25%), Gaps = 54/434 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA  E+R     + G         ++       +            P   
Sbjct: 54  QRVLAVTFTARAAGEMRDRL-RMMGVAGV---QAQTFHAAARRQLKYFWPQVAGDLPWT- 108

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                     L+      +   ++ +  ++   +       I  AK+     +  E    
Sbjct: 109 ----------LLDNKFPLVARAVRSVGLDNSKDMIRDVLAEIEWAKSALVSAEDYE---- 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
               +             +A  F +      T  ++ L+    + +    +         
Sbjct: 155 --SVIAETDRTAPADAAKVAEAFRRYEKAKATPDMMHLDFDDLLMHIAGAIENVPAIAET 212

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +      ++       P   R+++      +   V+   D +     +N  + +     
Sbjct: 213 FREQYRTFVVDEYQDVTPLQQRVLNAWLGDRDDLTVV--GDANQTIYSFNGASPEYLLNF 270

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
           S +    T         +  L        ++ +++      + VI K+      + +   
Sbjct: 271 SRSYPDGT---------IVKLQRDYRSTPQVTDLA------NRVIGKATGRAAGTRLELQ 315

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLAR 400
            + E       K +         +E  EA  +A  +   L++     + A++      + 
Sbjct: 316 GMREPGPEPTFKAYE--------SEENEAQEVAGQVLTLLNQGVPASEIAILYRINAQSE 367

Query: 401 RVKLELTRFGINIDISAGIPLSTTL----HSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
           + +  L   G+   +  G              +L +         D +AIA      L  
Sbjct: 368 QFEQALADAGVVYQVRGGEGFFRRPEILEAIRVLIAATRRDDLPEDPVAIARAAFVELGL 427

Query: 457 FGFPEKYLSRAKNA 470
                +     +  
Sbjct: 428 SATEPQGAQARERW 441


>gi|284044826|ref|YP_003395166.1| exodeoxyribonuclease V subunit beta [Conexibacter woesei DSM 14684]
 gi|283949047|gb|ADB51791.1| exodeoxyribonuclease V, beta subunit [Conexibacter woesei DSM 14684]
          Length = 1132

 Score = 43.0 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 81/827 (9%), Positives = 181/827 (21%), Gaps = 109/827 (13%)

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +       ++     + P    +M          +VL G D       +      
Sbjct: 253  AVAARLHRRYRIALVDEFQDTDPDQWAIMRRAFAATGTTLVLIG-DPKQAVYSFRGADVF 311

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
            +    +         + +       LD             +E+  R +  + +   P   
Sbjct: 312  AYLDAARAADAHPTLRVNWRSDQRLLDAYDALFGAARLGHDEIVYRQVRAAAANRAPRLH 371

Query: 338  DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR-------------MSLDE 384
                   L  ++         +      +       +A  L               + D 
Sbjct: 372  GAPGAAPLRIRVVPRDAPTVRLTSGGTASPASARAYVARDLAADVVALLESGARIETRDS 431

Query: 385  NKK----------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            + +            A++      AR +K  L   G+   ++ G  +  +  +     LL
Sbjct: 432  DGRAVGHTPVGPGDVAVLVRRNVQAREIKTALEAAGVPAVVAGGGSVFASESARDWLVLL 491

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
             A+ +                 +       +      EL                + + +
Sbjct: 492  QALERPELLARARAAALTAFLGWSAVRVAAAAEDAWDELQQRLHAWAGVMRRHGVAALTE 551

Query: 495  R-----------------IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                                   +  HV       S +++     L   + + I      
Sbjct: 552  TITSSERVSVRLLEIVGGERRLTDLRHVGELLHAASADEQLGITALAAWLRRRIEAGDRD 611

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                +      S ++  ++                P LW            +        
Sbjct: 612  ADADDRARRLESDAEAVQVLTVHRSKGLEFPIVYCPYLWDPIWIPNEPLPATFHDAANGG 671

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
             +   +   +        +    + +    L +     +R  +   +   G        +
Sbjct: 672  ARTIDVALDEDNQDYRRHQRQDKEEQLGEELRLAYVALTRARHQAVVWWAG--SWSSRNS 729

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
                    R    ++    +     +AA D                R   +  +     Q
Sbjct: 730  ALGRLVFERDADGNVPATGSFTPTDEAATDRFRQLAAAAAGAIAVERATVVDGVRWSPPQ 789

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                L     F       +      R+  +TT        +    LE  P      EI  
Sbjct: 790  EPWTLLEAATF------DRALDQRWRRTSFTTITAGAFEARVASELEEAPGADDAVEIPL 843

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE---LIKKRINKNTPEINHL 834
            L+  P      R      +    + P     GT  H+++            + T  I   
Sbjct: 844  LLPSPSGD--DRATASAAVSLLSELPAGARIGTFVHSVLEATDFAASDLDGELTAHIGAA 901

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP-AKMAIES 893
            + +      +   L   +         +++  +   +    + ++++   +P       +
Sbjct: 902  LDRRRIDVGDPAALAGGLRAAIETPLGELAGGWRLRDLPRSARLDEMGFELPLVGGDAPT 961

Query: 894  IGIHLT-------------------------------------GFADRIDLLKSGF-VDI 915
              + L+                                     G  D +     G    I
Sbjct: 962  GELTLSAVAAVLRAHVAPDDPLAGYAERLSDPALRSHLRGYLAGAIDLVARRAEGVPYAI 1021

Query: 916  TDYKTGDNPKKETA----------------QKLIDPQLSLEAAALKA 946
             DYKT        A                +     Q  L A AL  
Sbjct: 1022 VDYKTNRLAAAGEALTPWHYRPAALAIEMQRSHYVLQALLYAVALHR 1068



 Score = 38.7 bits (88), Expect = 5.9,   Method: Composition-based stats.
 Identities = 66/798 (8%), Positives = 156/798 (19%), Gaps = 51/798 (6%)

Query: 11  IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK 70
           +                  +           + L  + I   T+ A  ELR         
Sbjct: 15  LPEGVTVLEASAGTGKTYAIAALATRYVAEGIPLDQLLIVTFTRMATGELRDRVRHRLAS 74

Query: 71  ---KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELAR---LILIWRNKLP 124
                  +    + G   E         S  +      I R L       +  I      
Sbjct: 75  TREALDAIAAGAAPGVYDEVVRLLASGTSAEVARRRDRIVRALAEFDAATITTIHSFCQE 134

Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLAD------------IIDIIETEEKKWEDLHA- 171
            + +  +            +   LA+ + D                 E      + +   
Sbjct: 135 ALGELGFAADLDRDHRFQEDVRDLAEEVVDDLYVRGFLTRPPHFRRAEAGRVALKAIDNP 194

Query: 172 -LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
               E         A      +      L     ++ +     L+    + L       +
Sbjct: 195 SAVLEPRAAGRSTYAGMRVGLATAARAELDRRKRAAALVTFDDLLLRLRDALEGPDGEAV 254

Query: 231 -----------IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                      ++     + P    +M          +VL G D       +      + 
Sbjct: 255 AARLHRRYRIALVDEFQDTDPDQWAIMRRAFAATGTTLVLIG-DPKQAVYSFRGADVFAY 313

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
              +         + +       LD             +E+  R +  + +   P     
Sbjct: 314 LDAARAADAHPTLRVNWRSDQRLLDAYDALFGAARLGHDEIVYRQVRAAAANRAPRLHGA 373

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
                L  ++         +      +       +A  L           AL+ +   + 
Sbjct: 374 PGAAPLRIRVVPRDAPTVRLTSGGTASPASARAYVARDLAA------DVVALLESGARIE 427

Query: 400 RRVKLELTRFGINIDISAGIPLSTTLH-SSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
            R           +       L      +  + + L A           ++     A+  
Sbjct: 428 TRDSDGRAVGHTPVGPGDVAVLVRRNVQAREIKTALEAAGVPAVVAGGGSVFASESARDW 487

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                       L                ++       A  +    +  W   +      
Sbjct: 488 LVLLQALERPELLARARAAALTAFLGWSAVRVAAAAEDAWDELQQRLHAWAGVMRRHGVA 547

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                +    +    L+     +        + +         Q         L      
Sbjct: 548 ALTETITSSERVSVRLLEIVGGERRLTDLRHVGELLHAASADEQLGITALAAWLRRRIEA 607

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            +    +   ++ +E+      +A     +      G              I    E   
Sbjct: 608 GDRDADADDRARRLES------DAEAVQVLTVHRSKGLEFPIVYCPYLWDPIWIPNEPLP 661

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697
             F     GG        +       ++  +        E+   +    +      RH  
Sbjct: 662 ATFHDAANGGARTIDVALDED-----NQDYRRHQRQDKEEQLGEELRLAYVALTRARHQA 716

Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
           +   +   ++  +   R +      G      +     +   D  R+L            
Sbjct: 717 VVWWAGSWSSRNSALGRLVFERDADGNVPATGSFTPTDEAATDRFRQLAAAAAGAIAVER 776

Query: 758 KPFPPLEAQPRTYSFSEI 775
                            +
Sbjct: 777 ATVVDGVRWSPPQEPWTL 794


>gi|227502915|ref|ZP_03932964.1| helicase [Corynebacterium accolens ATCC 49725]
 gi|227076337|gb|EEI14300.1| helicase [Corynebacterium accolens ATCC 49725]
          Length = 684

 Score = 43.0 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 45/434 (10%), Positives = 112/434 (25%), Gaps = 54/434 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA  E+R     + G         ++       +            P   
Sbjct: 54  QRVLAVTFTARAAGEMRDRL-RMMGVAGV---QAQTFHAAARRQLKYFWPQVAGDLPWT- 108

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                     L+      +   ++ +  ++   +       I  AK+     +  E    
Sbjct: 109 ----------LLDNKFPLVARAVRSVGLDNSKDMIRDVLAEIEWAKSALVSAEDYE---- 154

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
               +             +A  F +      T  ++ L+    + +    +         
Sbjct: 155 --SVIAETDRTAPADAAKVAEAFRRYEKAKATPDMMHLDFDDLLMHIAGAIENVPAIAET 212

Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
            +      ++       P   R+++      +   V+   D +     +N  + +     
Sbjct: 213 FREQYRTFVVDEYQDVTPLQQRVLNAWLGDRDDLTVV--GDANQTIYSFNGASPEYLLNF 270

Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
           S +    T         +  L        ++ +++      + VI K+      + +   
Sbjct: 271 SRSYPDGT---------IVKLQRDYRSTPQVTDLA------NRVIGKATGRAAGTRLELQ 315

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLAR 400
            + E       K +         +E  EA  +A  +   L++     + A++      + 
Sbjct: 316 GMREPGPEPTFKAYE--------SEENEAQEVAGQVLTLLNQGVPASEIAILYRINAQSE 367

Query: 401 RVKLELTRFGINIDISAGIPLSTTL----HSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
           + +  L   G+   +  G              +L +         D +AIA      L  
Sbjct: 368 QFEQALADAGVVYQVRGGEGFFRRPEILEAIRVLIAATRRDDLPEDPVAIARAAFVELGL 427

Query: 457 FGFPEKYLSRAKNA 470
                +     +  
Sbjct: 428 SATEPQGAQARERW 441


>gi|315656454|ref|ZP_07909343.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315493013|gb|EFU82615.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 519

 Score = 43.0 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 48/391 (12%), Positives = 108/391 (27%), Gaps = 54/391 (13%)

Query: 29  TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88
            +    R   +NP    +V     T++A  E+++   E  G         ++       +
Sbjct: 55  RIAYGVRSGQVNPE---NVLALTFTQKAAAEMKTRL-EGLGVGQVWA---RTFHSAALAQ 107

Query: 89  FTADLL-LSYNLNPPVSNIQRLLELA---RLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                  +     P V+ ++  L  A   RL L         +      + +SL      
Sbjct: 108 VRHFWPQVMGGTVPTVTGLKATLVTAAGVRLGLNLGKAQVRALAGEIEWAKVSLIDPSHY 167

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
           A+       + +    TE         L   +         DF  I        L+    
Sbjct: 168 ALAARAAGREAVADFSTERVA----ELLDAYEDAKIAAEMLDFEDIL-------LLCAGM 216

Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                     +R +            ++       P    L+ +         V+   D 
Sbjct: 217 MDEREDVARTIRNQ--------YRYFVVDEYQDVSPLQNYLLMSWLGRRRDLAVV--GDA 266

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +   T +     +      T+P+  + +L+       +                
Sbjct: 267 AQTIYSFAGATPEYLTEFT-----QTYPEAKVVELIRDYRSTPQI--------------V 307

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
            + ++       +D         ++ + ++   +V+   A ++  EA  IA  ++  L E
Sbjct: 308 NLANQVLAQAKGTDG-RPLGGTVRLVSQRETGPEVSWFVAPDDETEAKEIARRIQDLLAE 366

Query: 385 --NKKKSALITADRNLARRVKLELTRFGINI 413
             + ++ A++      A    + L    I  
Sbjct: 367 GLSPRQIAVLFRTNAQAALFAVALGAKRIPF 397


>gi|325923202|ref|ZP_08184885.1| hypothetical protein XGA_3919 [Xanthomonas gardneri ATCC 19865]
 gi|325546317|gb|EGD17488.1| hypothetical protein XGA_3919 [Xanthomonas gardneri ATCC 19865]
          Length = 496

 Score = 43.0 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 38/328 (11%), Positives = 74/328 (22%), Gaps = 60/328 (18%)

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
           E+    A   +       H ++  S     +  T  S  L+ L  L G      +     
Sbjct: 23  EQRAEDARLLYVGLTRAEHALWIASGPFHQHERTALSGMLRALDTLQGAAGEGAVVVDTS 82

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL----INDPYAVY------ 786
                  +L    +        P   +  +   YSF+++         DP A        
Sbjct: 83  TPPATLPRLPPPIEAQVPPARTPQRHIAPEWWVYSFTQLANADAGAATDPMASATVVGSG 142

Query: 787 -------ARRILKLDFIPHFKKDPDRTDRGTLFHNIITE--LIKKRINKNTPEINHLMKQ 837
                  +  I     +  F         G + H++                        
Sbjct: 143 GSDEPSGSEAIAVAAEVDTFDPRFAGNRFGVVMHDVFERCDFAAWHAWHPGQPAPEGQAA 202

Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFL------------------EHEEKIQSSIE 879
            I    ++             +   +    L                   +E +   ++ 
Sbjct: 203 AILEALQRGGYTQDELDDGLAMLTALIGHTLTVALPEGTTLAAVPEPQRRNEMEFHFAMR 262

Query: 880 KIFVN------IPAKMAIESIGI--------HLTGFADRIDLLKSGFVDITDYKTGDNPK 925
              V           +  +             +TG  D +     G   + DYK+   P 
Sbjct: 263 PTRVEALLALLHRFGVVSDRQAFGARQRLEGLMTGLID-LTYTVDGRWYVLDYKSNRLPS 321

Query: 926 -------KETAQKLIDPQLSLEAAALKA 946
                  +  A    + Q  +   AL  
Sbjct: 322 YDADALARAMAHSEYELQALIYTVALHR 349


>gi|319761603|ref|YP_004125540.1| tpr repeat-containing protein [Alicycliphilus denitrificans BC]
 gi|317116164|gb|ADU98652.1| TPR repeat-containing protein [Alicycliphilus denitrificans BC]
          Length = 1267

 Score = 43.0 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 62/660 (9%), Positives = 131/660 (19%), Gaps = 24/660 (3%)

Query: 193  KYWTERLV-ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL--MSTV 249
              W   L              AL                ++            +  +   
Sbjct: 398  AAWQAVLRLAPGQFDDAALVQALRHQLRSRSGDPRLMRALVDAQERLGEPQPAIDYLRQH 457

Query: 250  ANHPNGAIVLPGL-----DCHIPTAIWN--TITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
            A  P    +L  L        +    W              +        Q+   +L   
Sbjct: 458  AQDPEALELLAQLAERAGQPDLALQTWRQLLADPAQITPERAMHAAVLALQHRQPELGLQ 517

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                 +D       +     R           D   +     L +        +  +  +
Sbjct: 518  WLQAVQDHPPASAEAAAELWRFTGDLARSRARDQLAIAAYRKLVDAQHADVADYDALIGL 577

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALIT--ADRNLARRVKLELTRFGINIDISAGIP 420
               ++  EA  +A+      DE +     +T  + RN        L +     D +    
Sbjct: 578  LQQDQPLEAAKVALLAWQQHDEPRHLIEALTLYSSRNQWNEFAHALDQLDPTPDAARHSL 637

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG-- 478
                     L  +         F       +  LA               L         
Sbjct: 638  ARMRRSGQFLRLVGGYHHNAGRFAEARQYYEEGLAIDPASSDMRQALLWLLIDSNDAASI 697

Query: 479  ----NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                  +       + L     A  +  +       R               ++     L
Sbjct: 698  RRLLAAHEQAWSADEDLHEALAAAYQALSLPQVALHRYLSPHVAEREGDFLWLMNYADAL 757

Query: 535  VTYKTNKNSTCGNLSIS--DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
               +    +      +    W +              R L     E   +   +    + 
Sbjct: 758  EQNQEADRAWRLRRHLLSQQWQEGRNGRRLTPAQARQRWLTEEGLEATQRVARARLILLQ 817

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG-TLESRLLNFDTLILGGLNE 651
              G   +    E + +      G +          L   G     R   +          
Sbjct: 818  RPGDPAQEVLRELLRLDRDAQGGYSNAAAETAIGWLQDAGEYTAERGFLWHQYARSRSLR 877

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR---HLIYTRSLRENNI 708
               P        L+   ++       E       +D            L  + +      
Sbjct: 878  TNRPLWAEITVALAEDDKAAAGQLLQEFDERLPRYDRVNTAAAVGDIRLAQSAAFETQES 937

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                +    +L                   L    +     +      P+    L+A   
Sbjct: 938  QPDDNPLHLQLTDNLLAFSDHAGMLSRHSDLGAIDEDQAEARLHLAISPRLSLDLDASRI 997

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
                +   QL + P    A  +L+        +    + RG      ++   ++R++   
Sbjct: 998  QRRVTAPDQLRDAPGEDIAGALLRWGHADGETRLRVASRRGYADTTPLSIEHEQRLDNRL 1057


>gi|121593196|ref|YP_985092.1| hypothetical protein Ajs_0772 [Acidovorax sp. JS42]
 gi|120605276|gb|ABM41016.1| Tetratricopeptide TPR_2 repeat protein [Acidovorax sp. JS42]
          Length = 1296

 Score = 43.0 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 62/660 (9%), Positives = 131/660 (19%), Gaps = 24/660 (3%)

Query: 193  KYWTERLV-ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL--MSTV 249
              W   L              AL                ++            +  +   
Sbjct: 427  AAWQAVLRLAPGQFDDAALVQALRHQLRSRSGDPRLMRALVDAQERLGEPQPAIDYLRQH 486

Query: 250  ANHPNGAIVLPGL-----DCHIPTAIWN--TITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
            A  P    +L  L        +    W              +        Q+   +L   
Sbjct: 487  AQDPEALELLAQLAERAGQPDLALQTWRQLLADPAQITPERAMHAAVLALQHRQPELGLQ 546

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                 +D       +     R           D   +     L +        +  +  +
Sbjct: 547  WLQAVQDHPPASAEAAAELWRFTGDLARSRARDQLAIAAYRKLVDAQHADVADYDALIGL 606

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALIT--ADRNLARRVKLELTRFGINIDISAGIP 420
               ++  EA  +A+      DE +     +T  + RN        L +     D +    
Sbjct: 607  LQQDQPLEAAKVALLAWQQHDEPRHLIEALTLYSSRNQWNEFAHALDQLDPTPDAARHSL 666

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG-- 478
                     L  +         F       +  LA               L         
Sbjct: 667  ARMRRSGQFLRLVGGYHHNAGRFAEARQYYEEGLAIDPASSDMRQALLWLLIDSNDAASI 726

Query: 479  ----NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                  +       + L     A  +  +       R               ++     L
Sbjct: 727  RRLLAAHEQAWSADEDLHEALAAAYQALSLPQVALHRYLSPHVAEREGDFLWLMNYADAL 786

Query: 535  VTYKTNKNSTCGNLSIS--DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
               +    +      +    W +              R L     E   +   +    + 
Sbjct: 787  EQNQEADRAWRLRRHLLSQQWQEGRNGRRLTPAQARQRWLTEEGLEATQRVARARLILLQ 846

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG-TLESRLLNFDTLILGGLNE 651
              G   +    E + +      G +          L   G     R   +          
Sbjct: 847  RPGDPAQEVLRELLRLDRDAQGGYSNAAAETAIGWLQDAGEYTAERGFLWHQYARSRSLR 906

Query: 652  GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR---HLIYTRSLRENNI 708
               P        L+   ++       E       +D            L  + +      
Sbjct: 907  TNRPLWAEITVALAEDDKAAAGQLLQEFDERLPRYDRVNTAAAVGDIRLAQSAAFETQES 966

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                +    +L                   L    +     +      P+    L+A   
Sbjct: 967  QPDDNPLHLQLTDNLLAFSDHAGMLSRHSDLGAIDEDQAEARLHLAISPRLSLDLDASRI 1026

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
                +   QL + P    A  +L+        +    + RG      ++   ++R++   
Sbjct: 1027 QRRVTAPDQLRDAPGEDIAGALLRWGHADGETRLRVASRRGYADTTPLSIEHEQRLDNRL 1086


>gi|226945972|ref|YP_002801045.1| phosphoenolpyruvate carboxylase [Azotobacter vinelandii DJ]
 gi|226720899|gb|ACO80070.1| Phosphoenolpyruvate carboxylase [Azotobacter vinelandii DJ]
          Length = 878

 Score = 43.0 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 49/647 (7%), Positives = 131/647 (20%), Gaps = 33/647 (5%)

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
           LD  +          +       +   + HP     + L            + +  + + 
Sbjct: 111 LDRLLAGGHAADALARQLGRLEIDLVLTAHPTEVTRRTLIRKYEAIAAELAVLDHGDLLP 170

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
                + +             +I  ++   + +     ++IE    +     +    R  
Sbjct: 171 AEREAVHERLRRLIAEAWHTDEIRRSRPTPVDEAKWGFSVIEHSLWQAVPAFLRGVDRAL 230

Query: 382 LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
            +       L              +           G P  T   +  +  L        
Sbjct: 231 HEATGLHLPL----------EAAPIRFSSWMGGDRDGNPNVTAAVTREVLLLARWAAADL 280

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
               +  L      +    E      +       L                         
Sbjct: 281 HLRDVEQLAAELSMQEASSELRARTGEVDEPYRVLLKQLRERLFATRDWAAAALHGEAVR 340

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
           +  V      L +  +     L    +  I       + + +    L +           
Sbjct: 341 SPAVLQNNRELLQPLELCYRSLHACGMGLIADGPLLDSLRRAATFGLFLVRLDIRQDAAR 400

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
               L E  +   L    +    +     + E  S      + +           T +  
Sbjct: 401 HAAALSEITEYLGLGRYADWNEETRTAFLMRELDSRRPLLPVHFPASAETAEVLATCREV 460

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
            +  +       +       D L +  L +    +   +   L   +    N     + +
Sbjct: 461 AQAPAASLGSYVISMAAAPSDVLAVQLLLKECGLQRPMRVVPLFETLTDLDNAAPTVERL 520

Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ------------RLLVLGGTDFFD 729
                     +G + ++   S    +  T A+ W Q            R  V        
Sbjct: 521 LLLPGYRARLHGPQEVMIGYSDSAKDGGTTAAAWAQYRAQEGLVEVCRRQGVELLLFHGR 580

Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYK-RPKPFPPLEAQPRTYSFSEIKQL-------IND 781
                          L         + R      +         + ++ L       +  
Sbjct: 581 GGTVGRGGGPAHAAILSQPPGSVPGRFRTTEQGEMIRFKFGLPDTAVQSLNLYLSAVLEA 640

Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFH---NIITELIKKRINKNTPEINHLMKQI 838
                         +             ++       +    +    +    +    +  
Sbjct: 641 TLLPPPAPEPAWRELMDRLAAEGLAAYRSVVREHPQFVEYFRQATPEQELGRLPLGSRPA 700

Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
                  E+L     I        +  ++L  E  + +++ +    +
Sbjct: 701 KRRAGGIESLRAIPWIFAWTQTRLMLPAWLGWETALGNALARGEGEL 747


>gi|330502844|ref|YP_004379713.1| condensin subunit Smc [Pseudomonas mendocina NK-01]
 gi|328917130|gb|AEB57961.1| condensin subunit Smc [Pseudomonas mendocina NK-01]
          Length = 1162

 Score = 43.0 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 62/605 (10%), Positives = 146/605 (24%), Gaps = 38/605 (6%)

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
           +   +A+L            +       L+     A  + L + LA         E + E
Sbjct: 401 QQSRIAQLEQSLERLAERQRRLNEELQQLAADPEDAAILELNEQLAAG-------ELEHE 453

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
            L  L  E+         + L+ A +   +   EL   +    ++A + A  +  +   +
Sbjct: 454 AL-QLAEEQQAERLQQLREELQQAGQAQQQVQGELQRLNG---RLASLEALQQAALDPGQ 509

Query: 228 GPIIIAGSTGSIP----ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
           G                A    + +        ++   L   +                 
Sbjct: 510 GAGEWLREQNLQQRPRLAEGLRVESGWELAVETVLGADLQAVLLDDFAGLDFSALEQGEL 569

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN------EMYGRSMVI---SKSFLPP 334
              + ++        LLD ++   +    L  V         +  R  +    S      
Sbjct: 570 RLASPASGGARRAGSLLDKVESSHDLSPWLAGVRPVESLEQALAARGQLADGESLISRDG 629

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
                    +      +         L     EREE  +    L   L   +    L   
Sbjct: 630 YWVGRHFLRVRRAAEADNGVLARGQELERLQLEREEREAALAQLDERLLALRDDQRLQEE 689

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
            R   RR   EL R    +   A +  S      +         +L +      + +  L
Sbjct: 690 QREQQRRQGQELARQLSELK--AKLSASQAKAEQLGLRRRRLQDELQEAAEQREVEQEQL 747

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
            +     +    A             +   + +    V       K++ H    +    +
Sbjct: 748 GESRLQLQDALDAMALDNEQRESLLASRDSLRERLDRVRQEARQHKDHAHQLAVRVGSLK 807

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
              +     ++ +      L     ++     +L++ +           +     R++  
Sbjct: 808 AQHDSTRQALERLEMQAERL-----HERREQLSLNLEEGEAPLEELRIKLEELLERRMAV 862

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                + +       + +      +  A +   ++   ++ + +  +        +   L
Sbjct: 863 DDELRQARLALEDADRELRDAEKRRTQAEQQAQLLRSQLEQQRMDWQSLNVRRKALADQL 922

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
                +   +I             A        ++           I  AA D       
Sbjct: 923 AEDNYDLHGVI-------ATLPAEATESAWEEELERMAARIARLGPINLAAIDEYQQQSE 975

Query: 695 RHLIY 699
           R    
Sbjct: 976 RKRYL 980


>gi|118463052|ref|YP_880103.1| gp60 protein [Mycobacterium avium 104]
 gi|118164339|gb|ABK65236.1| gp60 protein [Mycobacterium avium 104]
          Length = 284

 Score = 43.0 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 60/206 (29%), Gaps = 22/206 (10%)

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
           P     A   + S+S  K L++ P      R  +       ++     D G L H +I  
Sbjct: 14  PEAVYHADRASLSYSGAKLLLSSPAKF---RRAQDHPPKPKRE----YDLGHLAHKLILG 66

Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
                +  + P+      +       +  L P +         ++  +  +HE       
Sbjct: 67  KGADLVVVDAPDWRTKDAREARDQAHELGLVP-VLGSELANAEQMRAAVRDHELA-GPLF 124

Query: 879 EKIFVNIPAKMAIESIGIHLTGFAD------RIDLLKSGFVDITDYK--TGDNPKKETAQ 930
            +    +          + L G AD       ID+     + I DYK  T  NPK     
Sbjct: 125 AEGRAEVSMYADDPETAVRLRGRADWLTNGNVIDIGD--RLLIVDYKTTTDANPKSWWRA 182

Query: 931 K---LIDPQLSLEAAALKAGSFSQID 953
                   Q +   +  +A       
Sbjct: 183 ALRFGYHMQFAWYVSLARALRLDDSP 208


>gi|166713637|ref|ZP_02244844.1| glutamine synthetase adenylyltransferase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 922

 Score = 42.6 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 75/730 (10%), Positives = 174/730 (23%), Gaps = 42/730 (5%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           ARL       L +   + +             A  +A + A +    + E + WE    L
Sbjct: 181 ARLGQQLARLLDETTAEGFSHRVDLRLRPFGTAGRVALSFAGMDQYFQREGRDWERYAWL 240

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------ 226
           K             +L+    +   R ++  A   +    A + AE     +        
Sbjct: 241 KARAVAGAIDAGEAWLETLRPFVYRRYLDFTALDGLREMKAAITAEVARQDRLDDIKRGP 300

Query: 227 ----------KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                     +   +I G         RL+  +        +       + TA       
Sbjct: 301 GGIREIEFLAQSLQLIRGGREPSLRERRLLPALRALVTAGQIDQENGQTLTTAYRFLRRL 360

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +      PQ  L +    L +   +   L +       R        L P  
Sbjct: 361 ENRLQMLRDAQTHALPQAPLDRERIALGLGYAEWATLLDALAPQRARVAAEFAELLAPRV 420

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                  + +          + +A +   +      ++A              A  +  R
Sbjct: 421 RATAPDTLADYWRALPAGDAAPLAGMSLSDPGGAHQALA------------DFAQSSGVR 468

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L+   +  L R    +  +A            +  LL A  +   ++A+       LA+
Sbjct: 469 ALSDSARARLDRAMPALLHAATRASQPDAAVRRMLGLLQATLRRTSYLALLDEQPSALAR 528

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                   +     L             + +L    +      +   H         ++ 
Sbjct: 529 LVDVLSRSALLAERL-------AAYPLLLDELLDTRISGPLPDRAALHAACADIVHIDDT 581

Query: 517 KELAVLLVDHI--LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
           +     L +          L T    + +      ++   +  V  + ++   E      
Sbjct: 582 EAALRELNERRLARSFRIALATLDGRQQAVESTRQLAWLAEAVVQAVLHLARSEMVAAHG 641

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
                    +       +E G     + +   D    +   +  +P         +    
Sbjct: 642 YVSGGSFAIIGYGSLGGLELGFGSDLDLVFLYDHPPEVDASDGKRPLEAGRWFARL--AQ 699

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694
           +   L       G L +                  +       E+           A   
Sbjct: 700 KVMALLAAETGAGRLYDIDVRLRPDGGKAALVSSLASYREYQRERAWTWEHQALVRARAV 759

Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754
                     +          ++        +    ++ R +  LD +       KQ   
Sbjct: 760 AGDALLC---DAFAQVRRYTLMRVRDTAQLHEDVRKMRARMRTELDRSDAGRLDLKQGAG 816

Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
                   L+A     +  + + L           ++++ ++P            TL   
Sbjct: 817 GLVDLEFVLQAGVLGLAAQQPQLLDVCDTPALIDALVQVHWLPDDSAASLHQAHATLVDA 876

Query: 815 IITELIKKRI 824
            ++  + +R 
Sbjct: 877 GLSCTLDRRP 886


>gi|154337693|ref|XP_001565079.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 2073

 Score = 42.6 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 83/838 (9%), Positives = 197/838 (23%), Gaps = 32/838 (3%)

Query: 57   IQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116
            +Q LR +  E   + + +    ++L +       A   L  +     +   ++ E A  +
Sbjct: 1017 VQALRDQIAEQAAEMAALR---QALAEARRASTAAGATLRDSGADVQALRDQIAEQAAEM 1073

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLA---------KNLADIIDIIETEEKKWE 167
               R+K+ +   ++             +    A         + L D +     E     
Sbjct: 1074 AGLRDKVAEQAAEMTALRQALAEARRGSTAAGATLRDSGADVQALRDQMAEQAAEMTGLR 1133

Query: 168  DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE---HLMK 224
            D  A +  +        A+  +  S      L +  A           +A          
Sbjct: 1134 DKVAEQAAEMSALCQALAE-ARRGSTAAGATLRDSGADVQALRDQIAEQAAEMTGLRDKV 1192

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITS 283
              +   + A       A     +  A   + GA V    D             ++     
Sbjct: 1193 AEQAAEMAALRQALAEARRGSTAAGATLRDSGADVQALRDQIAEQESEMAALRQALAEAR 1252

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
              +T +         ++  L  +  +         +          +         R + 
Sbjct: 1253 RGSTAAGATLRDSGAVVQALRDQIAEQAAEMTGLRDKVAEQESEMAALRQALAEARRGST 1312

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
                 +   +   +DV  +      +E+   A+   ++       +A  T     A    
Sbjct: 1313 AAGATL---RDSGADVQALRDQIAEQESEMAALRQALAEARRGSTAAGATLRDAGADVQA 1369

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
            L         +++          + +               A    ++      G   + 
Sbjct: 1370 LRDQIAEQAAEMTGLRDKVAEQAAEMTAFRQALAEARRGSTAAGATLR-----DGADVQA 1424

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
            L       E       +   +     +     +    +   +    +  + E   L   L
Sbjct: 1425 LRDQIAEQESEMTALRQALAEARRGSTAAGATLRDGADVQALRDQIAEQAAEMAALRQAL 1484

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
             +          T +   +       I++         Q +               +G  
Sbjct: 1485 AEARRGSTAAGATLRDGADVQALRDQIAEQAAEMTALRQALAEARRGSTAAGATLRDGAV 1544

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            + +L  +I E  + + A      +                    L     +  +      
Sbjct: 1545 VQALRDQIAEQAAEMTALRQALAEARRGSTAAGATLRDGAVVQALR--DQIAEQAAEMTG 1602

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
            L      +        +    +R   +       +  + QA  D               +
Sbjct: 1603 LRDKVAEQAAEMTALCQALAEARRGSTAAGATLRDGAVVQALRDQIAEQAAEMTGLRDKV 1662

Query: 704  RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR---PKPF 760
             E      A          G T     L+  G        ++     +    R    +  
Sbjct: 1663 AEQAAEMTALCQALAEARRGSTAAGATLRDGGADVQALRDQIAEQAAEMAALRQALAEAR 1722

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
                A   T       Q + D  A     +  L       +        TL      + +
Sbjct: 1723 RGSTAAGATLRDGADVQALRDQIAEQESEMTALRQALAEARRGSTAAGATLRDGADVQAL 1782

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHID--IIWRHLFHKISHSFLEHEEKIQS 876
            + +I +   E+  L + + ++          +    + + L  +I+    E     Q+
Sbjct: 1783 RDQIAEQAAEMTALRQALAEARRGSTAAGATLRDGAVVQALRDQIAEQAAEMTALRQA 1840


>gi|107022291|ref|YP_620618.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia AU
            1054]
 gi|105892480|gb|ABF75645.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia AU
            1054]
          Length = 2007

 Score = 42.6 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 90/903 (9%), Positives = 203/903 (22%), Gaps = 92/903 (10%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAG 234
            W  L A++L +A     ER       S       L  A   H      ++      +I  
Sbjct: 338  WLALIAEWLDMAPGELAERKRTRRVVSFDDLLANLYHALHAHPWLAETLRARYPAALIDE 397

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---TH 291
               + P    +   +        +    D       +      +     +  +       
Sbjct: 398  FQDTDPLQFAIFDRIFAPRG--PLFLVGDPKQAIYSFRAADLHTYLAARARASACYTLAV 455

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP-PDTSDMRNTDILENKIP 350
             Q S   ++D  +       R   +    Y      ++   P  D +D            
Sbjct: 456  NQRSTPAIVDACNRFFLSNPRAFVLDGLDYYAVRAGTRVRAPFVDETDPGPAGDFRVWAL 515

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---------KSALITADRNLARR 401
               +        +A   +  A  IA  +R + +   +           A++         
Sbjct: 516  PGGEGTLLKRDAQAQAAQACAAEIARLMRGAREGRVRLGESPLSPGDIAVLVQTHRQGSL 575

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            VK  L  +GI     A   + +T  +  L  +L AI    D   +   +           
Sbjct: 576  VKRVLATWGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLRRLRAALASDWFGLDAGA 635

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN---------THVPHWQSRL 512
             +     +           ++  +  ++     R+  ++             +   +  +
Sbjct: 636  LWRMEQGDGDAPPGASAADSADAMSWVERFSRYRLLWRERGFAVMWRTFTRELRIAERLM 695

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
            +  D E  V  ++H+ +      + +     T   L+              +  D +   
Sbjct: 696  AGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGGGEEAQLRLESDRNLVQ 755

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT----RLIDGETVKPKIEKSSTL 628
                 + +G   + +F   +  G   +  +    D                   E ++  
Sbjct: 756  IVTVHKSKGLEYAVVFCPFLNDGGLREPPSSALPDAREYHDDAGDAVLHYGCDDEAAAHA 815

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
                  E        + +            A     SR  +            G      
Sbjct: 816  ARQALREQAAERARLVYVALTRAVYRCYVVAGPYLSSRSTREARRSVLNWLVAGAGHAFD 875

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
               +         +          S     +          +   +       TR L   
Sbjct: 876  AWLDEPPDEAALEAAWRALAGGPVSVAPLPVPARRERLAAGHDASQTLAARHATRVLRDA 935

Query: 749  TKQPH--------YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
             +            +       +           +  +  D   ++A  +          
Sbjct: 936  WRLASFSSLTASMAREEAGVAAVPDDELRPDHDALAAVTPDGELIFADTVATDPPDDDIL 995

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
              P     G   H +                   +              P +      + 
Sbjct: 996  VFPRGAAAGECLHRLFELSRFTEPESWHAAALGALHD------RPVEAEPALAARLPAMM 1049

Query: 861  HKISHSFLEHEE---KIQSSIEKIFV--NIPA----------------------KMAIES 893
             ++    +  E         ++       +                         +A+E+
Sbjct: 1050 VRLVDDVVHTELVPGMRLVDLDPAKRLDEMGFLFPAPSLDLLALRRLLVAHGYPDVALEA 1109

Query: 894  IGIH--LTGFADRIDLLKSGFVDITDYKT---GDNPKK--------ETAQKLIDPQLSLE 940
              +   + GF D I     G   I D+K+   G  P            A      Q  L 
Sbjct: 1110 GTLAGFIKGFIDMIVEH-DGRFWIVDWKSNHLGTTPDAYGPRALDVAMADHAYHLQALLY 1168

Query: 941  AAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
              AL      ++        +A   Y+ ++          +     A   +   +  L  
Sbjct: 1169 TVALHRYLRGRLPDYDYDTHIAGYLYLFVRGVRPGWRSGGEPAGVHARRPARALVDALDR 1228

Query: 997  IVT 999
            ++ 
Sbjct: 1229 MME 1231


>gi|71415835|ref|XP_809970.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874433|gb|EAN88119.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 2493

 Score = 42.6 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 65/702 (9%), Positives = 177/702 (25%), Gaps = 24/702 (3%)

Query: 150  KNLADIIDIIETEEKKWEDLHALKNEKYGM--WWLLAADFLKIASKYWTERLVELNASSP 207
              LA + D +E   ++   L +  +E                 A     +RL E +    
Sbjct: 669  DALAALKDRLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALNDRLEEHSREKS 728

Query: 208  VG--YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
                     + A A    +  +    +A     +   +R  S + +  + ++        
Sbjct: 729  ALESRTSESVDALAAMERQLQERDDALAALKDRLEEHSREKSALESRTSESVDALAAMER 788

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                  +       +         +  +   ++ +D +      ++   +    +  R  
Sbjct: 789  QLQE-RDDALAALKDRLEEYGREKSALESRTSESVDAVVTLSRQLQERDDALAALKDRLE 847

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
              S+     ++    + D L      +Q+    +A +   +  EE      AL     E+
Sbjct: 848  EHSREKSALESRTSESVDALAAMERQLQERDDALAAL--KDRLEEYGREKSALESRTSES 905

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
                  +             L       + S       +  S  + +L     +  +   
Sbjct: 906  VDAVVTLRRQLQERDDALAALNDRLE--EHSREKSALESRTSESVDALAAMERQPQERDD 963

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
                +K  L ++   +  L    +      +   +   +  D  + + DR+         
Sbjct: 964  ALAALKDRLEEYSREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYSREKSA 1023

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN------KNSTCGNLSISDWTKLTVT 559
               ++  S +        +      +  L               +  + S+     +   
Sbjct: 1024 LESRTSESVDALAAMERQLQERDDALAALNDRLEEYSREKSALESRTSESVDALAAMERR 1083

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
              +        K     +  E   L S  S+ +   + ++    E  D +  L D     
Sbjct: 1084 LQERDDALAALKDRLEEYSREKSALESRTSESVGALAAMERQLQERDDALAALNDRLEEY 1143

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
             + + +     L +  S  ++    +   L E        K+       +         +
Sbjct: 1144 GREKSA-----LESRTSESVDAVVTLRRQLQERDDALAALKDRLEEHSREKSALESRTSE 1198

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
             +   A            +   + R        S    R       D    ++++ Q   
Sbjct: 1199 SVDALAAMERQLQERDDALAALNDRLEEHSREKSALESRTSESV--DALAAMERQPQERD 1256

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
            D    L+   ++   ++                   +    D      +  L+       
Sbjct: 1257 DALAALNDRLEEYSREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEHSREKS 1316

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
              +   ++       +  +L  +  +     +   +++    
Sbjct: 1317 ALESRTSESVDAVVTLRRQL--QERDDALAALKDRLEEYSRE 1356



 Score = 42.6 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 75/836 (8%), Positives = 203/836 (24%), Gaps = 35/836 (4%)

Query: 56   AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115
            A+  LR +  E     + +      L +   EK   +   +      ++ ++R L+    
Sbjct: 1328 AVVTLRRQLQERDDALAALKDR---LEEYSREKSALES-RTSESVGALAAMERQLQERDD 1383

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA-------KNLADIIDIIETEEKKWED 168
             L   N   +               S    + L          LA + D +E   ++   
Sbjct: 1384 ALAALNDRLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYGREKSA 1443

Query: 169  LHALKNEKYGMWWL--LAADFLKIASKYWTERLVELNASSPVG--YQIALMRAEAEHLMK 224
            L +  +E                 A     +RL E +             + A A    +
Sbjct: 1444 LESRTSESVDALAAMERQLQERDDALAALKDRLEEHSREKSALESRTSESVDALAAMERQ 1503

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
              +    +A     +   +R  S + +  + ++              +       +    
Sbjct: 1504 LQERDDALAALNDRLEEHSREKSALESRTSESVDALAAMERQLQE-RDDALAALKDRLEE 1562

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
             +   +  +   ++ +D +   R  ++   +    +  R    S+     ++    +   
Sbjct: 1563 YSREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYSREKSALESRTSESVGA 1622

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
            L      +Q+    +A +   +  EE      AL     E+      +            
Sbjct: 1623 LAAMERQLQERDDALAALN--DRLEEYDREKSALESRTSESVDAVVTLRRQLQERDDALA 1680

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             L               S T  S    + +    +  +       +K  L ++G  +  L
Sbjct: 1681 ALNDRLEEYGREKSALESRTSGSVDALAAMERQLQ--ERDDALAALKDRLEEYGREKSAL 1738

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                +      +   +   +  D  + + DR+            ++  S +        +
Sbjct: 1739 ESRTSESVDAVVTLRRQLQERDDALAALNDRLEEYGREKSALESRTSESVDALAAMERQL 1798

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
                  +  L       +        S     T   +  +   E +           K  
Sbjct: 1799 QERDDALAALKDRLEEHSREK-----SVLESRTSESVDALAAMERQLQERDDALAALKDR 1853

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS----TLFILGTLESRLLN 640
                S+         + +++ +  + R +          K                   +
Sbjct: 1854 LEEHSREKSALESRTSESVDAVVTLRRQLQERDDALAALKDRLEEYGREKSALESRTSES 1913

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
             D ++             A           + +   +       A               
Sbjct: 1914 VDAVVTLRRQLQERDDALAALKDRLEEYSREKSALESRTSESVDALAAMERQLQERDDAL 1973

Query: 701  RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
             +L++        +           D    L+++ Q   D    L+   ++   ++    
Sbjct: 1974 AALKDKLEEYGREKSALESRTSESVDAVVTLRRQLQERDDALAALNDRLEEHSREKSALE 2033

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
                      +  E +    D         L+         +   ++           + 
Sbjct: 2034 SRTSESVDALAAMERQLQERDDALAALNDKLEEYGREKSALESRTSESVDAV------VT 2087

Query: 821  KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
             +R  +   +    +   ++ H  +++               +     E ++ + +
Sbjct: 2088 LRRQLQERDDALAALNDRLEEHSREKSALESRTSESVDALAAMERQLQERDDALAA 2143


>gi|188989974|ref|YP_001901984.1| [glutamate-ammonia-ligase] adenylyltransferase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|226723976|sp|B0RN79|GLNE_XANCB RecName: Full=Glutamate-ammonia-ligase adenylyltransferase;
           AltName: Full=Glutamine-synthetase adenylyltransferase;
           Short=ATase; AltName: Full=[Glutamate--ammonia-ligase]
           adenylyltransferase
 gi|167731734|emb|CAP49914.1| [glutamate-ammonia-ligase] adenylyltransferase [Xanthomonas
           campestris pv. campestris]
          Length = 937

 Score = 42.6 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 64/602 (10%), Positives = 145/602 (24%), Gaps = 43/602 (7%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           ARL       L +   D +            +A  +A +   +    + E + WE    L
Sbjct: 199 ARLGQQLAKLLDETTADGFSHRVDLRLRPFGSAGRVALSFNGMDQYFQREGRDWERYAWL 258

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------ 226
           K             +L+    +   R ++  A   +    A + AE     +        
Sbjct: 259 KARPVAGDIAAGEAWLETLRPFVYRRYLDFTALDGLRDMKAAITAEVARHARLDDIKRGP 318

Query: 227 ----------KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                     +   +I G   +     RL+  +    +   + P     +  A       
Sbjct: 319 GGIREIEFLVQSLQLIRGGREASLRERRLLPALQALVDLGQIDPPTGQALAEAYRFLRRV 378

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +      PQ    +    L +     + L         R        L P  
Sbjct: 379 ENRLQMLRDAQTHALPQGEPERERIALGLGYAHWQALLEALAPHRTRVAAEFAELLAPRV 438

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                  + +      +   + +  I   +           L      +  ++    A  
Sbjct: 439 HATAPDTLADYWRALPEGDAAPLLGIGLHDPNN----AHHMLADFAQSSGVRALSDGART 494

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L R +   L          A            L  +L  +       +   L+      
Sbjct: 495 RLDRVMPALLHAAIRATQPDA-----------ALRRVLGLLQATLRRTSYLALLD----- 538

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                  L+R  + L   AL   + +   + L  L+  RI+    +    H     + + 
Sbjct: 539 --EQPSALARLVDVLSRSALLAERLAAYPLLLDELLDTRISGPLPDRAALHTACVDTLQI 596

Query: 517 KELAVLLVDHILQCIT-----PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            +    L +   + +       L T    +        ++   +  V  +  +   + + 
Sbjct: 597 DDTEAALRELNERRLALSFRIALATLDGRQQPVDSTQQLAWLAEAVVQTVLQLAQTQLQA 656

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                       +       +E G     + +   D    +   +  +P         + 
Sbjct: 657 AHGQVPGGAFAIIGYGSLGGMELGFGSDLDLVFLYDHPREVEASDGKRPLEAGRWFARLA 716

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
             + + L            +     +  K   +S +       +         A     A
Sbjct: 717 QKVMTLLGAETGAGRLYDIDVRLRPDGGKGALVSSLASYRDYQRDRAWTWEHQALVRARA 776

Query: 692 NG 693
             
Sbjct: 777 VA 778


>gi|325066923|ref|ZP_08125596.1| putative ATP-dependent DNA helicase II [Actinomyces oris K20]
          Length = 174

 Score = 42.6 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 53/198 (26%), Gaps = 34/198 (17%)

Query: 796 IPHFKKDPDRTDR-GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
                 +P    R GT+FH+ + + +  R                     +  +P  +  
Sbjct: 3   RRPLPPEPRAAGRLGTVFHDAVAQRLSARGTLFD--------------LGQAGVPDSLGP 48

Query: 855 IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG-FV 913
             R    +    +LE  E +    + +         I      L    D +   K G   
Sbjct: 49  QDRDRIER----WLETAENLPLLEDYVLAETETDREITIGATTLRCRMDAVFQRKDGPGW 104

Query: 914 DITDYKTGDNPKKETAQKLIDPQLSLE--AAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971
            I D+KTG              QLS+   A A   G              Y+ +      
Sbjct: 105 LIVDWKTGRRQVPVD-------QLSVYVHAWAASQGV-----PTASVRAAYVYVDYPGGR 152

Query: 972 DCITNDKKKYSADELSEK 989
                 +   S +++   
Sbjct: 153 VDELTAEGLLSIEQIQAA 170


>gi|222110700|ref|YP_002552964.1| uvrd/rep helicase [Acidovorax ebreus TPSY]
 gi|221730144|gb|ACM32964.1| UvrD/REP helicase [Acidovorax ebreus TPSY]
          Length = 1101

 Score = 42.6 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 60/815 (7%), Positives = 163/815 (20%), Gaps = 107/815 (13%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPII 231
                 A   +     + +   E         +   +            +  +      ++
Sbjct: 342  HQQRMARLARALIAQFAQLKRERGWVDMNDVERTALVMLSDPILSGWVQERLDARVRHLL 401

Query: 232  IAGSTGSIPATARLMSTVANHPNGAI-------VLPGLDCHIPTAIWNTITE--KSTNIT 282
            +     + P   + +        GA        V    D       +             
Sbjct: 402  VDEFQDTNPLQWQALHAWLAGYAGAGGGQQPPSVFIVGDPKQSIYRFRRAEPQVFKAAQA 461

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                              + + +     + +     +          +        +R  
Sbjct: 462  FVREGLGGDLLACDHTRRNAIGVIAAVNRAMQAAQAQGEYAGFRDHTTESRDPGQLLRLP 521

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NKKKSA 390
             I      +     +          R EA    + +R                   ++  
Sbjct: 522  PITAPDGGDAAAATAPEWRDTLTQPRHEAEE-TLRMRECAQAAQWVAAQIAAGVQPQEIM 580

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            ++   R+    ++  L    +         L        + +LL+A+      +++A  +
Sbjct: 581  VLARKRDRLASLQEALRALHVPCVQPEKAELGEAPEVQDIVALLDALVSPGHDLSLARAL 640

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
            + PL             +            +     D+           +    V     
Sbjct: 641  RSPLFGLTDHALVQIALRVR----QTAAEGSPCSWFDVLQKSELLPPDLQALAPVLAQYK 696

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            R  E          D +               +   +        L       +  D  R
Sbjct: 697  RWVETRPP-----HDALHAIYEHGDVPARFAAAAPASQRAGVLANLRALLAAALQQDGGR 751

Query: 571  KLPNLWFEEEGKT--LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
             L    F    K   + +      +    +  +  + ++  + L+     + +  ++   
Sbjct: 752  YLTAYAFVRAMKRPGMRAPGRVEAQAVRLLTIHGAKGLEAHSVLLLDTDARAQKAETMGA 811

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +    +        L    L     P  +A +          L  + AE+   +    +
Sbjct: 812  LV----DWPGEQAAPLRFVFLASESNPPPSAVDL---------LAAELAERQREELNTLY 858

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                  +H                         L  +    +    G  +      L   
Sbjct: 859  VAMTRAKHC------------------------LALSAVQSSTAAPGSWWNRLAESLQDA 894

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
               P                                                    ++ +
Sbjct: 895  PVPPAAPLGDVADDAAVALPQLPP------------YAGAAPGAQAAAAGAPVSTPQSRQ 942

Query: 809  GTLFHNIITEL-IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS- 866
            G   H ++ +  +              + Q+                + R +        
Sbjct: 943  GEAMHQLLEQAGVVGAPRAGGVWPARRLAQLARDFDITAEAAAQAAAMARSILQGEGAWA 1002

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926
            +     +   +   +            + +            +     + DYK+   P++
Sbjct: 1003 WNPDHVEQALNEAPLVYQGQGLRLDRLVRLR--------QPREGARWWVLDYKSATAPER 1054

Query: 927  ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
                    PQL  +    +    +Q    +V   F
Sbjct: 1055 -------QPQLMAQLRLYREAVGAQFPGEQVGAAF 1082


>gi|41409395|ref|NP_962231.1| hypothetical protein MAP3297c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398226|gb|AAS05847.1| UvrD2 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 703

 Score = 42.6 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 60/593 (10%), Positives = 136/593 (22%), Gaps = 62/593 (10%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T+RA  E+RS    +    +     + S+  +         L  +        
Sbjct: 58  QVLAVTFTQRAAGEMRSRL-RVLAAAAGTDAAVGSVSALTFHAAAHRQLRYFWPRVVGDT 116

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
             +LL                       S   +  S  +   LA  +      +   E+ 
Sbjct: 117 GWQLL------------DSKFAVVARAASRTRINASTDDVRDLAGEIEWAKASLIGPEEY 164

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
              + A   +       +A          +       +  + + +   L+   A      
Sbjct: 165 PAAVAAAGRDIPLDAARVAG-----VYAAYEALKARGDHVTLLDFDDLLLHTAAAIENDP 219

Query: 226 --------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                        ++       P   R+++      +   V+   D +     +   + +
Sbjct: 220 AVAEEFRDRYRCFVVDEYQDVTPLQQRVLAAWLGDRDDLTVV--GDANQTIYSFTGASPR 277

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337
                S        P  ++ +L        + V     V     GR              
Sbjct: 278 FLLDFSRRF-----PDATVVRLERDYRSTPQVVSLANQVIAAARGRVAGSKL-------- 324

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITAD 395
            +                       E  +E  EA ++A ++   ++      + A++   
Sbjct: 325 HLVGQRPPGPVP----------TFHEHSDEPAEAAAVAKSIARLIESGTPASEIAVLYRV 374

Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
              +   +  LT  GI   +  G               L    +     A     + PL 
Sbjct: 375 NAQSEIYEEALTEAGIPYQVRGGEGFFNRQEIKQALLALQRAAEREGEDAR----EEPLP 430

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                            +    G +       L++L             +          
Sbjct: 431 AVVRAVLEPLGLTAEEPV----GTRARERWEALRALAELVDDEVARRPQLDFAGLLTELR 486

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH-RKLPN 574
            +  A          +  L   K  +      + ++D T      L +    E   +   
Sbjct: 487 MRADARHPPVVQGVALASLHAAKGLEWDAVFLVGLADGTLPISHALAHGADSEAVEEERR 546

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
           L +    +  + L        S     + +    +  +      +    +S  
Sbjct: 547 LLYVGITRARTHLALSWALARSPGGRQSRKPSRFLNGIAPQTRAEAAPARSRR 599


>gi|15193244|gb|AAK91740.1|AF400249_1 axoneme-associated protein GASP-180 [Giardia intestinalis]
          Length = 1627

 Score = 42.6 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 82/787 (10%), Positives = 195/787 (24%), Gaps = 19/787 (2%)

Query: 62   SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
                      +  L  I+ L   V+E          +     +  +++  L   I    N
Sbjct: 590  EADATRGADAAEYLARIEELQQQVKELSGRSRDAPADETAIRALEEKIRALTDEIEARDN 649

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
            ++ ++ + +       +   PA    L +    + D ++      E L     ++     
Sbjct: 650  QIAELKELVDGAPAQPVEADPAQLTALEEENGRLKDELQALNDALEALRKSGADEASGLR 709

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
               A   K  S    E L    AS        L+  + E L    +  + +        A
Sbjct: 710  GQVAHLNKEVSD-LKEALANARASGDASDVEKLVELQ-EQLEDAQEQLLSLKDRYDCAVA 767

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
                M            +   +    +   + + E+   +           Q    +L  
Sbjct: 768  EMEDMRRELEQKPVGSTVYTEEPGASSEDLDRLKEELDALREEV-------QVLNEELEV 820

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                 RE    L  ++  +  +  +I+      D++  ++   ++     I      VA 
Sbjct: 821  MHGQNREQKDELNRLNGALDAKESLIADLKAQLDSTVPQDDARIKILEDEIADLRGTVAA 880

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
             +      E  +    L         K   +    +  RR++ E+ +    +      PL
Sbjct: 881  RDDAIRGLEEKTA--RLAELEQLAADKGKEVADKEHSLRRLEDEVRQLNDALCELREKPL 938

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP----EKYLSRAKNALELVALR 477
            S           ++A  +++D           +  F          L    NAL      
Sbjct: 939  SVAPSDQSGAEYVDAQTEISDVDPEEQAKVSSILDFDDGLVQKVDELQALVNALTGENDH 998

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                   IM     + + +   K  +           +       LV+ + + +      
Sbjct: 999  YKGEHARIMAEMDALKEDLRNGKLRSDSLEGDKERLMKQVRDLTDLVESLRKDLGAPQDQ 1058

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                        +           +       +    L         +   S+++     
Sbjct: 1059 GEVAALRQEVADLRSRVDELTDAARGKDETIEQLEKELAIVRASVENTERLSELLAEVEG 1118

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
             K    E  +++  L+     K      +T  +    +          +  L   V    
Sbjct: 1119 YKTKLGESKEMVDSLLAQLASKDAELAGATTGLRAVTDDDGAELAKARVASLENEVAELR 1178

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
               +  L+ +     NL  ++    +   +         +    +    +   +     Q
Sbjct: 1179 GQLSAKLAEIDAVHKNLVDSDAEAARLREELGGL----RVQLETAQVPEDTERVRMLEDQ 1234

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
                           +  +   +  R    T       + +       + R  + +   +
Sbjct: 1235 LQDARKELAELRAALEAKEMETEGLRAELATADPELANKLEASEATVRELRESAEALQDK 1294

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L     +  A   L+       K      +        I EL ++  +    +       
Sbjct: 1295 LHALSDSRAADGDLQKLVEQLEKDLSGAKELVAERDATIDELKQRLRDTEEYDDLKERIA 1354

Query: 838  IIDSHFE 844
             +D    
Sbjct: 1355 ELDDEIA 1361


>gi|71901329|ref|ZP_00683425.1| phage-related protein [Xylella fastidiosa Ann-1]
 gi|71728913|gb|EAO31048.1| phage-related protein [Xylella fastidiosa Ann-1]
          Length = 426

 Score = 42.6 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 65/236 (27%), Gaps = 32/236 (13%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S S   + ++ P +V   R  K              D GT+ H +              
Sbjct: 7    LSPSSAHRWLHCPASVPLTRTCK-------DDASPFADEGTVAHTV-------------- 45

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
                 ++   D+              W            ++++   I        V  P 
Sbjct: 46   -AADALRTGCDASAYVGACHEVNGHRWEVTAEMAAYVQEYVDYVRAIAG---VRLVEQPL 101

Query: 888  KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947
            ++A  +      G AD + +L    + I D K G            + QL L A A    
Sbjct: 102  RIASITREQGAKGTAD-VVVLAGDELTIVDLKYGR---GVKVFAEGNEQLQLYALAALQ- 156

Query: 948  SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
             F+ ++  +   L  ++ +     + +    +     +   +        +    N
Sbjct: 157  EFAGVEAFQHVRLVIVQPRLGHADEWVRTLPQMEDFRQKVAQGAARCRAAMWHYDN 212


>gi|54026506|ref|YP_120748.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
 gi|54018014|dbj|BAD59384.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
          Length = 716

 Score = 42.6 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 64/571 (11%), Positives = 126/571 (22%), Gaps = 56/571 (9%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T RA  ELR     +    +      ++       +            P    
Sbjct: 59  QVLAVTFTARAAGELRGRLRALGLGGAANQVQARTFHAAALRQLKYFWPQVVGEVP---- 114

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                   RL+      +      +   +           I  AK+              
Sbjct: 115 -------WRLLEAKFPVVAQAAHRVGLSTATESVRDLLTEIEWAKS----------SLVA 157

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN----ASSPVGYQIALMRAEAEH 221
            ED  A     +      A     + + Y + +             + +  A +      
Sbjct: 158 PEDYPAAAAAHHRDIPYDAGRIAAVYTAYESLKTTPEGLLLDFDDLLLHTAAALEDFPAV 217

Query: 222 LM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +G     ++       P   R++       +   V+   D +     +   T    
Sbjct: 218 ADEFRGRYRSFVVDEYQDVTPLQQRVLDAWLGERDDLTVV--GDANQTIYSFTGATPSYL 275

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM--VISKSFLPPDTS 337
              S        P  ++ +L        + V     V     GR     +      PD  
Sbjct: 276 LDFSRRF-----PDATVVRLERDYRSTPQVVSLANRVIGAARGRIAGTRLQLVGQRPDGP 330

Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397
           +    +  +              L+ A     E                   A++     
Sbjct: 331 EPEFAEYDDAPAEAAAVAAKIERLVAAGTPPAE------------------IAVLYRINA 372

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT--LVKHPLA 455
            +   +  L   GI   +  G               L      +D  A A        L 
Sbjct: 373 QSEAYEQALAERGIPFQVRGGEGFYQRAEVRQALGALRQAASRDDLPAEARTGAALVRLV 432

Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
           +       L+  + A      R    +  +   + LV    A               +  
Sbjct: 433 RAALAPVGLTATEPAGAQARERWASLTALVTLTEELVAHDAALDLTGLLRELAARAEARH 492

Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
              +  + +  +                T G L I+       +      L+E R+L  +
Sbjct: 493 PPTVQGVTLASLHAAKGLEWDAVFLVGLTDGTLPIAHVLADDGSVADVAALEEERRLLYV 552

Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
                 + L   +S     G         ++
Sbjct: 553 GVTRAREYLRLSWSLSRTEGGRRSRRRSRFL 583


>gi|326317373|ref|YP_004235045.1| SMC domain-containing protein [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374209|gb|ADX46478.1| SMC domain protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1163

 Score = 42.6 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 62/712 (8%), Positives = 152/712 (21%), Gaps = 32/712 (4%)

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG-SIPATARLMSTVANHPN 254
              +  L  + P      +  A            + +  ST     A       +     
Sbjct: 281 DADVQRLRRAEPAMRLSPVHAAWQSAQQAEATCALRLRESTDRLAEAATAHALALGRAAA 340

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
            +  L  L      A    +              +   +    +       + ++     
Sbjct: 341 VSRHLAVLRLGEWQAGREALAALEAGGIDDPRHTALAERLGDWRSRFQARARLQEEIGRT 400

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
               +         +  L       R+ D ++       +     A +E    R+EA   
Sbjct: 401 QAQRQEMADRCAGQERLLQAAGEAARHADAVQADAQVGAEQARG-AYVERLAGRDEAYWR 459

Query: 375 AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
              LR++   +    A    DR  A+RV+        +      + L  +L    +    
Sbjct: 460 EEPLRLARLGHLWGQARECRDRIAAQRVEQARRSAEQSERQGRVVALEASLQQLAMRHAD 519

Query: 435 NAIFKLNDFMAIAT------------LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
                 +    +A              ++   +                 L         
Sbjct: 520 GQQRVRDQERLLAQERRIQSLESHRQQLRPGESCPLCGATEHPALAAYEALDVSATEAAL 579

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                    + D     +        Q   ++ED       V  +      L        
Sbjct: 580 ESARRALDAIADERRQSEATLAALRAQQTRAQEDAAAGERAVAELEDRWQTLCAALEWPA 639

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
               ++ + D  +        V              E  +       +        +A A
Sbjct: 640 DRTDSVLLEDAQRRHAGTAAEVQAHGAELARTRERGEAAQRALQQAERDAGAARQARALA 699

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
              +    + +           +    I G L   L +    +       +  +      
Sbjct: 700 ERDLQAQKQQLQSLAEALDRLAADLKNIEGELARELADHGYDLPAQPGRWLQDRTRELEA 759

Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
           + +        L        +A H   +A          + R + +   +     R   +
Sbjct: 760 WQADCAHRQGLLAQLPLQQQRAEHADAVAQQ-------WAQRRDALLVASEGNTLRKEGV 812

Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK-------RPKPFPPLEAQPRTYSFSEI 775
           G  D      +R +  L    +   T              + +       +    + +  
Sbjct: 813 GHPDGEGMAPERLEDLLQQAAQAVQTHAAALATLGGTRDAQQQAQVLAAEEVTRSAAAWT 872

Query: 776 KQLINDPYAV---YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
             L   P+     +    L        +   +   +       +     K ++       
Sbjct: 873 TALAESPFTDAEDFLAARLDPAERQALQDGVESARQALTTAQALHHEAAKGLDALLSAPL 932

Query: 833 -HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
              +   +++               +              E +Q+ + +I  
Sbjct: 933 SDRLLPEVEAELADLEAQSTQAAQRQGEIAGRLREDARRRESLQALLTEIAA 984


>gi|227498173|ref|ZP_03928344.1| ATP-dependent DNA helicase (UvrD/REP) [Actinomyces urogenitalis DSM
           15434]
 gi|226832423|gb|EEH64806.1| ATP-dependent DNA helicase (UvrD/REP) [Actinomyces urogenitalis DSM
           15434]
          Length = 673

 Score = 42.6 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 74/293 (25%), Gaps = 28/293 (9%)

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLS 549
            VL R A Q         ++ +    +  A     + +   +  L    T +        
Sbjct: 354 AVLYRTAAQAPAIEQALAEAGIGRLVRGGARFFEREEVRTAMRRLRAAATTERGQLS--- 410

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
             D  +   T L  V        P     E   +L++L     +  S   A+    +   
Sbjct: 411 -GDVGEDARTVLARVGWAPQPPSPRGAMRERWDSLNALVELADDLASTRGADLGGLVR-- 467

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
              ++             + +     ++ L +D +I+ G+ +G+ P + A+         
Sbjct: 468 --ELEERAQAQNAPAVEGVTLSTIHAAKGLEWDAVIIVGVTDGLLPISLAEG-------- 517

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTI---ASRWLQRLLVLGGT 725
                   E    +    +      R  L+ + +             SR+L  +      
Sbjct: 518 -------PEGIEEERRLLYVAVTRAREHLVLSYARARATGSRASRKPSRFLTGIWPTAEP 570

Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
                 K             ++  +               +    S   +   
Sbjct: 571 TPPRAAKLSSPRSSRRQAAAEFEAENDASTVALFEELRRWRGEVASSKSVPAY 623


>gi|159118276|ref|XP_001709357.1| Axoneme-associated protein GASP-180 [Giardia lamblia ATCC 50803]
 gi|157437473|gb|EDO81683.1| Axoneme-associated protein GASP-180 [Giardia lamblia ATCC 50803]
 gi|213495866|gb|ACJ49153.1| head-stalk protein GHSP-138 [Giardia intestinalis]
          Length = 2124

 Score = 42.6 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 65/684 (9%), Positives = 158/684 (23%), Gaps = 88/684 (12%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            +  E+     +    +       +Q+ L   R             ++          +  
Sbjct: 1077 EAREKALAEAIDGIADHGDAAQQLQQELAALRRDAAENAAALREAREQAAAHQEDAQLKA 1136

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDL-----------------------HALKNEKYGM 179
            A    L++ LA + +    +  +  D                           K  +   
Sbjct: 1137 AQLEDLSEELARLREQAAEDAVRARDAEALAERAAELEAQAKAAEERLADARAKIAELEA 1196

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239
                  + L  A++ +  +  +         ++      AE      +  +  A    + 
Sbjct: 1197 HAAAGTEALADAAEKFRAKAQQAQGGDEAIRRLEADVRAAEAERDEARAALDKALDEAAA 1256

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS------NTTYSTHPQ 293
                            A +    D            E   +  +       +     H  
Sbjct: 1257 LEAEHKNLEAERDALAAQLAEAQDALQTARAQLAAAEDRVSALTENLGAMNDAKAQVHYL 1316

Query: 294  YSLAKLLDFLDIKRED-----VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
               A+  D L  ++ D      + L    +++   S +  ++    + + M    + E K
Sbjct: 1317 EEAARDKDTLAQRQADEIAELRRELQEAHDKIDALSHLEQQASDSKERTQMLEDYLSELK 1376

Query: 349  IPNIQKCFSDVALI-------------------------EADNEREEAISIAIALRMSLD 383
               I     ++ L                          EA+  REEA +    L+    
Sbjct: 1377 SKQIDAGMQEMELGTLRKELEQKQGELDEKTVALDMLRNEAERLREEADNRERELQQLRA 1436

Query: 384  ENKKKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLN------- 435
            ++ + +A         R      L      I   +     TT       + +        
Sbjct: 1437 QDNEGAAERIVQLEAERDDLHATLDAKDKEIGQLSDELSRTTASVEAARTRIQALEDEAA 1496

Query: 436  ------------AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                             N    + + ++    K     + +   +  L  + L+ +    
Sbjct: 1497 ARAEQAEESAAKTARLRNRVDELESALQSLGRKAEARAEEVRDRERQLTAMDLKRSATDG 1556

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
             + D ++ +          T     + +   E  +      D   Q    L   + +   
Sbjct: 1557 ALEDAQNRIRRLEDESAALTDKLEAREKALAEAIDGIADHGDAAQQLQQELAALRRDAAE 1616

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                              +     +          E+     +   +     +    +A 
Sbjct: 1617 N---------AAALREAREQAAAHQEDAQLKAAQLEDLSEELARLREQAAEDAVRARDAE 1667

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
               +    L        +    +   I           + L           +       
Sbjct: 1668 ALAERAAELEAQAKAAEERLADARAKIAELEAHAAAGTEALADAAEKFRAKAQQAQGGDE 1727

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHD 687
              R +++D+    AE+   +AA D
Sbjct: 1728 AIRRLEADVRAAEAERDEARAALD 1751


>gi|269215900|ref|ZP_06159754.1| ATP-dependent DNA helicase [Slackia exigua ATCC 700122]
 gi|269130850|gb|EEZ61926.1| ATP-dependent DNA helicase [Slackia exigua ATCC 700122]
          Length = 1239

 Score = 42.6 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 53/189 (28%), Gaps = 15/189 (7%)

Query: 781  DPYAVYARRILKLDFIPHFKKDPD-RTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
            DP+A  A           F  D D  TD G  FH +    +++  +  +       ++  
Sbjct: 1006 DPFADDAEEGAFGRAGAAFALDEDRATDVGAAFHALAQWSVEEFESGLSSCRCDASRREG 1065

Query: 840  DSHFEKENLPPHIDII-----WRHLFHKISHSFLEHEEKIQSSIEK-IFVNIPAKMAIES 893
                  + +                       +       ++     +    P  + + +
Sbjct: 1066 LPLPPPDRIAATAQAFGVSSSAAPRLEAACLRWTGSACAREAIAWPNLHAEYPFFIPMGA 1125

Query: 894  -----IGIHLTGFADRIDLLKSGF-VDITDYKTGDNPK--KETAQKLIDPQLSLEAAALK 945
                     L G  D     + G    I DYKTG       E   +    Q +  A A  
Sbjct: 1126 SSDGSEEWVLEGSMDLFSGEEDGSCARIVDYKTGGRFDDAPEDILERHRLQATCYAFAAL 1185

Query: 946  AGSFSQIDC 954
            +  + +++ 
Sbjct: 1186 SSGYDRVEA 1194


>gi|78065794|ref|YP_368563.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. 383]
 gi|77966539|gb|ABB07919.1| Exodeoxyribonuclease V, beta subunit [Burkholderia sp. 383]
          Length = 1236

 Score = 42.6 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 91/903 (10%), Positives = 200/903 (22%), Gaps = 92/903 (10%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAG 234
            W  L A++L +A     ER       S       L  A   H      ++      +I  
Sbjct: 339  WLALIAEWLDMAPGELAERKRTRRVVSFDDLLANLYHALHAHPWLAETLRARYPAALIDE 398

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---TH 291
               + P    +   +     G  +    D       +      +     +  +       
Sbjct: 399  FQDTDPLQFAIFDRI--FAPGGPLFLVGDPKQAIYSFRAADLHTYLAARARASERYTLAV 456

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP-PDTSDMRNTDILENKIP 350
             Q S   ++D  +       R   +    Y      ++   P  D +D            
Sbjct: 457  NQRSTPAIVDACNRFFMSNPRAFVLDGLDYYAVRAGTRVRAPFVDATDPGPAGDFRVWAL 516

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---------KSALITADRNLARR 401
               +        +A   +  A  IA  +R + +   +           A++         
Sbjct: 517  PGGEGTLLKRDAQAQAAQACAAEIARLMRGAREGRVRLGDTPLSPGDIAVLVQTHRQGSL 576

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            VK  L+ +GI     A   + +T  +  L  +L AI    D   +   +           
Sbjct: 577  VKRALSTWGIGSVELAQASVFSTHDAEQLERVLAAIDAPGDLRRLRAALASDWFGLDAGA 636

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN---------THVPHWQSRL 512
             +     +           ++  +  ++     R+  ++             +   +  +
Sbjct: 637  LWRMEQGDGDAQRDASAADSADAMSWVERFSRYRLLWRERGFAVMWRTFTRELRIAERLM 696

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
            +  D E  V  ++H+ +      + +     T   L+              +  D +   
Sbjct: 697  AGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGGGEEAQLRLESDRNLVQ 756

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT----RLIDGETVKPKIEKSSTL 628
                 + +G   + +F   +  G   +  A    D                   E +   
Sbjct: 757  IVTVHKSKGLEYAIVFCPFLNDGGLREPPASALPDAREYHDDAGDAVLHYGCDDEAAEHA 816

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
                  E        + +            A     SR  +            G      
Sbjct: 817  ARQALREQAAERARLVYVALTRAVYRCYVVAGPYLSSRSTREARRSVLNWLVAGAGQSFD 876

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
               +         +  +       S       V        +   +       TR L   
Sbjct: 877  AWLDEPPDEAALDTAWQALAGGPVSVAPLPAPVRPERLAAGHDASQTLAARHATRMLRDA 936

Query: 749  --------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                          +       +           +  +  D   + A  +          
Sbjct: 937  WRMASFSSLTATMAREEAGVAAVPDDELRPDHDALAAVTPDGEWLLADPVAPEPPDDDIL 996

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
              P     G   H +                   +              P +      + 
Sbjct: 997  VFPRGAAAGECLHRLFELSRFTEPESWPRAALGALHD------RPVEAEPELATRLPAMM 1050

Query: 861  HKISHSFLEHEE---KIQSSIEKIFV--NIPAKMAIESIGIH------------------ 897
             ++    +  E       + ++       +       ++ +                   
Sbjct: 1051 VQLVDDVVRTELVPGMRLADLDPAKRLDEMGFLFPAPALDLMALRRLLVAHGYPDVALEA 1110

Query: 898  ------LTGFADRIDLLKSGFVDITDYKT---GDNPKK--------ETAQKLIDPQLSLE 940
                  + GF D I     G   I D+K+   G  P            A      Q  L 
Sbjct: 1111 GMLAGFIKGFIDMIVEH-DGRFWIVDWKSNHLGTTPDAYGPRALDVAMADHAYHLQALLY 1169

Query: 941  AAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
              AL      ++        +A   Y+ ++          +     A       +  L  
Sbjct: 1170 TVALHRYLRGRLPDYDYDTHIAGYLYLFVRGVRPDWRSGGEPAGVHARRPERALVDALDR 1229

Query: 997  IVT 999
            ++ 
Sbjct: 1230 MME 1232


>gi|170723358|ref|YP_001751046.1| exodeoxyribonuclease VII large subunit [Pseudomonas putida W619]
 gi|169761361|gb|ACA74677.1| exodeoxyribonuclease VII, large subunit [Pseudomonas putida W619]
          Length = 463

 Score = 42.6 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 84/301 (27%), Gaps = 12/301 (3%)

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
           G       A+   +  +             HPQ           + R+ +   G  + ++
Sbjct: 118 GALRLAFEALKEKLGAEGLFSAERKRPLPAHPQRIGIISSPTGAVIRDIISVFGRRAPQV 177

Query: 321 YGRSMVISKSFLPPDT---SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
               +  +             +R  D L      + +    +  +   NE   A +IA  
Sbjct: 178 ELNLVPTAVQGREAIAQIVRAIRLADSLGFDALILARGGGSLEDLWCFNEEAVARAIAAC 237

Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL--N 435
           +   +     ++ +  +D     R         +    S+G+          L   +   
Sbjct: 238 VTPIVSAVGHETDVSISDFVADVRAPTPSAAAELLAPDSSGLQQRLEGLQRRLLLRMQNR 297

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
                    ++   ++HP        + L +    L+ + +R  +     ++ +   L R
Sbjct: 298 LAHDRLRLESLTRRLRHP-------GERLRQQAQRLDDLDMRLRRAFLQSLNQRRERLAR 350

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
           + T+    H       LS+    LA  L   + + +         +  T   +S      
Sbjct: 351 LDTRLAAQHPGRTLKLLSQRLDSLAERLPRAMREVLKDRRQRFQAQLQTLQVVSPLATLA 410

Query: 556 L 556
            
Sbjct: 411 R 411


>gi|229821378|ref|YP_002882904.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
 gi|229567291|gb|ACQ81142.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
          Length = 684

 Score = 42.6 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 55/525 (10%), Positives = 129/525 (24%), Gaps = 62/525 (11%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
           + V     T RA  E+RS   ++           ++       + +     +        
Sbjct: 61  SRVLAVTFTARAAGEMRSRLRDLGVGGV----QARTFHAAALRQLSYFWPDAVG------ 110

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA-KNLADIIDIIETEE 163
                             LP I +   P    +       A  LA ++LA  I+  +   
Sbjct: 111 ----------------GSLPRIAEYKAPLVGEASGRLGLGADRLAIRDLASEIEWAKVSL 154

Query: 164 KKWEDLHALKNEKYGMWWLLA-ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
              +D     +              +      + E   E          +  +   AE  
Sbjct: 155 VTADDYVRAASAAGRPGAAGHDLTTVARLLTMYEECKTERGVIDFEDVLLLTVGILAERD 214

Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
                 +      ++       P   RL+           V+   D       +   + +
Sbjct: 215 DVARAVRAQYRHFVVDEYQDVSPLQQRLLELWLGERRELCVV--GDVSQTIYSFTGASPR 272

Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK-RLGNVSNEMYGRSMVISKSFLPPDT 336
                        +P+  + +L+       + V+     ++     RS    +      +
Sbjct: 273 YLTDFPRR-----YPEADVVRLVRDYRSTPQVVRLANDVLARAGRARSSAAVELVAQRPS 327

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                 D  ++     Q     +A + A   R                   + A++    
Sbjct: 328 GPAPTFDAYDDDAAEAQAIARRIAALVAGGVRT-----------------SEIAILYRTN 370

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL-- 454
             A   +  L + GI   +  G              LL    +  D   +  +V+  L  
Sbjct: 371 AQAEAFEQALAQAGIGYLVRGGERFFARREVREAVVLLRGAARAADERPVGEIVRDVLGG 430

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
           A +         A            + + D+ + +   L  +  + +          +  
Sbjct: 431 AGWSAQAPTARGAVRERWESLDALVQLADDLHERRDADLPALLAELDERAAAQHAPTVEG 490

Query: 515 EDKELAVLL--VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                      ++     +  +       +   G+ +I++  +L 
Sbjct: 491 VTLASLHAAKGLEWDAVFLAGVSDGLLPISLAEGDEAIAEERRLL 535


>gi|121636549|ref|YP_976772.1| putative exonuclease V subunit beta recBa [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224989021|ref|YP_002643708.1| putative exonuclease V subunit beta [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|121492196|emb|CAL70663.1| Probable exonuclease V (beta chain) recBa [first part]
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224772134|dbj|BAH24940.1| putative exonuclease V subunit beta [Mycobacterium bovis BCG str.
           Tokyo 172]
          Length = 897

 Score = 42.6 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 60/710 (8%), Positives = 153/710 (21%), Gaps = 120/710 (16%)

Query: 185 ADFLKIASKYWTER---LVELNASSPVGYQIALMRAE---AEHLMKGTKGPIIIAGSTGS 238
             F     +    R   L     +  +      + A    A   M+     +++     +
Sbjct: 208 LRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPARDRMRERWRIVLVDEFQDT 267

Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
            P   R++    +  +  I++   D       +      +    +               
Sbjct: 268 DPMQWRVLERAFSRHSALILI--GDPKQAIYGFRGGDIHTYLKAAGTADAR--------- 316

Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
               L +     + L      +  R   +  + +    +D  +        P        
Sbjct: 317 --YTLGVNWRSDRALVESLQTV-LRDATLGHADIVVRGTDAHHAGHRLASAPRP--APFR 371

Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
           + +++                                  L R +  +L      +  S  
Sbjct: 372 LRVVKRHT------------------LGYDGTAHVPIEALRRHIPDDLAADVAALLASGA 413

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
                 + ++ +  ++                  P    G  + + S+A           
Sbjct: 414 TFAGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAA---------- 463

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                 +  L++    + +          +    +E        L D +   +     + 
Sbjct: 464 ---KDWLCLLEAFDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLHEWADHA 520

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
            ++       +              +     R L     E +   L+ +   + E     
Sbjct: 521 RHRGVAAVFQAA------------QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRE 568

Query: 599 KANAIEWIDIITRLIDGETVKPKI-----EKSSTLFILGTLESRLLNFDTLILGGL---- 649
           +       D + R        P+        ++ + I+    ++ L F  + L       
Sbjct: 569 RLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRN 628

Query: 650 ---------NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
                    ++                 ++   L   E         +      +  +  
Sbjct: 629 VRSDDILLYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVA 688

Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT------------------ 742
                 +        L R    G +   D    R      W                   
Sbjct: 689 WWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVI 748

Query: 743 ---RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI----------------KQLINDPY 783
                L+     P ++       ++   R  S+S++                 +      
Sbjct: 749 GARSSLEKPVPVPGFEVRHFHRRIDTTWRRTSYSDLVRGSEAVTVTSEPAAGGRADEVEI 808

Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
           AV+A      D        P     G+L H ++        +        
Sbjct: 809 AVFAAPGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAELEAQ 858


>gi|146307770|ref|YP_001188235.1| condensin subunit Smc [Pseudomonas mendocina ymp]
 gi|145575971|gb|ABP85503.1| condensin subunit Smc [Pseudomonas mendocina ymp]
          Length = 1162

 Score = 42.6 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 49/583 (8%), Positives = 139/583 (23%), Gaps = 40/583 (6%)

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLH------------------ALKNEKYGMWWLLAA 185
           +   LA+    + + ++      ED                     L  E+         
Sbjct: 411 SLERLAERQRRLNEELQQLAADPEDAAILELNEQLAAGELEHEALQLAEEQQAERLQQLR 470

Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG-STGSIPATAR 244
           + L+ A +   +   EL   +     +  ++  A    +G    +   G       A   
Sbjct: 471 EDLQQAGQAQQQAQGELQRLNGRLASLEALQQAALDPGQGAGDWLREQGLLQRPRLAEGL 530

Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
            +          ++   L   +                    +  T        LLD ++
Sbjct: 531 RVEAGWELAVETVLGADLQAVLLDDFAGLDFASLEQGELRLASPGTAGARRAGSLLDKIE 590

Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI--LENKIPNIQKCFSDVALI 362
               D+         +      ++      D   + + D   +      +++     + +
Sbjct: 591 -SSHDLSPWLASVRPVESLEQALAARAQLADGESLISRDGYWVGRHFLRVRRAAEADSGV 649

Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR------FGINIDIS 416
            A  +  E + +    R +      +  L   D    +    E  R           ++ 
Sbjct: 650 LARGQELERLQLEREEREAALAQLDERLLALRDEQRRQEELREQKRRQGQELARQLSELK 709

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
           A +  S      +         +L +      + +  L +     +    A         
Sbjct: 710 ARLSASQAKAEQLGLRRCRLQDELQEAAEQREIEQEQLGEARLQLQDALDAMALDNEQRE 769

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
               +   + +    V       K++ H    +    +   +     ++ +      L  
Sbjct: 770 SLLASRDSLRERLDRVRQEARQHKDHAHQLAVRVGSLKAQHDSTRQALERLEMQAERL-- 827

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
              ++     +L++ +           +     R++       + +       + +    
Sbjct: 828 ---HERREQLSLNLEEGEAPLEELRIKLEELLERRMAVDEELRQARLALEDADRELRDAE 884

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
             +  A +   ++   ++ + +  +        +   L     +   +I           
Sbjct: 885 KRRTQAEQQAQMLRSQLEQQRMDWQSLNVRRKALADQLAEDNYDLHGVI-------ATLP 937

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
             A        ++           I  AA D       R    
Sbjct: 938 AEATESAWEEELERMATRIARLGPINLAAIDEYQQQSERKRYL 980


>gi|209519570|ref|ZP_03268362.1| cellulose synthase operon C domain protein [Burkholderia sp. H160]
 gi|209499987|gb|EEA00051.1| cellulose synthase operon C domain protein [Burkholderia sp. H160]
          Length = 1295

 Score = 42.6 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 68/728 (9%), Positives = 177/728 (24%), Gaps = 43/728 (5%)

Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
           A+ LAD+   I  E     +L  +  +     W      L +  + + +       +  +
Sbjct: 198 AQALADLQTRI-RENPDDLNLQLVLADVLTNDWSTRLQGLNLLYRVYQQPQSNRKMALDL 256

Query: 209 GYQIAL------------MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
             +  +             R   + +        ++A         A           GA
Sbjct: 257 WRRALVYSPHDDPAYYIWWRRYLQEVPGDPLAQSVVAEFERKGVNEATAARLAERGNAGA 316

Query: 257 IVLP-GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
              P   +        + + E+                +  A  LD  + ++        
Sbjct: 317 PRAPETPEQRARREQGDALGEQGLARQREGRQDEARALFERALTLDPDNARKWRSLIATA 376

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                  ++   +    P +   +   + L     N+    + +  + A  +  EA ++A
Sbjct: 377 TLWGTIAKANTANSQGKPAEGEAL-AREALRQDPSNVIAQRALIDALIAQQKWPEAEAVA 435

Query: 376 IALRMSLD---ENKKKSALITADRNLARRVKLELTRFGINIDISAGIP-LSTTLHSSILT 431
             L  +     +  +    I    +    +   +      +  S     L+    + +  
Sbjct: 436 RPLATAAKPDIDALRDLVTILRATHRENEIDPLMASVSPRLASSGSQAQLARMRATVLSL 495

Query: 432 SLLNAIFKLNDFMAIATLV-------KHPLAKFGFPEKY----LSRAKNALELVALRGNK 480
               ++ + N+  AIA L          P  ++   + Y    L     A+    L+   
Sbjct: 496 QAQQSMTEKNNSAAIAKLEEAVRLTPDDPWLRYSLAQLYAGLKLPALGRAVMEDCLKAAP 555

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
           ++             +             S          +       + +         
Sbjct: 556 STQMRYASALYFNYALGDIDAANAQIEQISPQERTQPMRELADNITAQRLVRDARQQTAE 615

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                   S+     +     Q +       +     +     +        +  +   A
Sbjct: 616 GRDDEARASLRQAEAVAQNDPQMLATIGQEWIALGDADRGLALVKDWLDAHPQDPAI--A 673

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG------GLNEGVW 654
             + + D++      + +     +S  L  +   +    +  +L L        L+ G  
Sbjct: 674 VRLRYGDLLAAAHRDDDLAVWTARSRALPGMTDTQRAQFDDQSLRLALRTVNRQLDSGDV 733

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
                    +     +D     A+  + + A DF            +     +     +R
Sbjct: 734 HGARRTLAGVPDAQHTDARWLLAQADVDETAGDFRAGARAAQSALAKQPDNADARLTLAR 793

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLD----WTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
             + +                    D             +    +      PL  +    
Sbjct: 794 MYEHMGRRTEATALTREVLADTPADDVNTRLAIAQRLVAQGHEDEAAAVIGPLRGEFPQR 853

Query: 771 SFSEIKQLINDPYAVYARRILKL-DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
           S   ++    D           L       ++       GT     +   +++  ++  P
Sbjct: 854 SDLTLQAGRIDEAQGRFNDAAALYREAGTQERAEGPPQPGTDGLTPVGRALQQLQDRRQP 913

Query: 830 EINHLMKQ 837
           +I+  + Q
Sbjct: 914 DISTEVIQ 921


>gi|260753609|ref|YP_003226502.1| helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552972|gb|ACV75918.1| helicase domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 894

 Score = 42.6 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 42/435 (9%), Positives = 100/435 (22%), Gaps = 35/435 (8%)

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
             +    + + L  +A   +     +  L   + +R    +   H+   +   +      
Sbjct: 225 AREIAVLSGDDLRQIARAFSAQGVPLSGLPGQLPERDVIGETALHLALAKRPPTPAMVLA 284

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
           ++ L   +            +        +I   T        ++           +  +
Sbjct: 285 SLALSPLMPWAAQTGRDLAESLMGGDFRGAILTGTPAHKELWDDIRASAGSLPQLRFLLD 344

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI--DGETVKPKIEKSSTLFILGTLESR 637
                     ++    +          +II R I                + +    ES 
Sbjct: 345 RICERIGKGDQVRARLTVPPGEGTPDWEIILRGIQIAPPMAADPDRNLEGVSLWSAHESP 404

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFL----SRVMQSDLNLKTAEKYIGQAAHDFE---- 689
                 LI+    +G++P     NP         +++ + +    +  G A         
Sbjct: 405 WRPCRHLIVSDFTDGLYPTRPRANPLFLDSEIAAIRAGIGVHLRGRAEGLAQSLALLDQQ 464

Query: 690 -MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
             A                     S  L  +          +                  
Sbjct: 465 LQAVSGSVTFLIPWRDLAGGRLQPSAGLSLVARAVAGVEDASDLITDLSRQSPAEWPIAY 524

Query: 749 TKQPHYKRPKPFPPLEAQP---------------RTYSFSEIKQLINDPYAVYARRILKL 793
                   P   P   A                 +  S S ++ L+  P A     +   
Sbjct: 525 HHLMPVPEPAELPEELAFTGHDLLSLRRRDDGTAKPQSPSRLETLLVSPLAWLLAEV-GA 583

Query: 794 DFIPHFKKDPDRTDRGTLFHNIITE-------LIKKRINKNTPEINHLMKQIIDSHFEKE 846
           + +    ++ D   RG + H++          ++K R  +   E    + ++     E  
Sbjct: 584 EDMSWATEELDVLARGNIAHDVFEHGVDEIDVMLKTRYQEWASERRAELARLHRE-LEDL 642

Query: 847 NLPPHIDIIWRHLFH 861
            L          +  
Sbjct: 643 ALEGGAAAFLSEILR 657


>gi|297566438|ref|YP_003685410.1| polynucleotide adenylyltransferase region [Meiothermus silvanus DSM
           9946]
 gi|296850887|gb|ADH63902.1| Polynucleotide adenylyltransferase region [Meiothermus silvanus DSM
           9946]
          Length = 854

 Score = 42.6 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 75/789 (9%), Positives = 174/789 (22%), Gaps = 23/789 (2%)

Query: 60  LRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIW 119
           +R   +  T +   I PI + +G V  + +        +L      ++ +     L++  
Sbjct: 64  VREVIVVDTARADRIGPIGELVGKVPFQVYDHHPRTPQDLPAAGGVVEAVGSTVSLLMPM 123

Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIETEEKKWEDLHALKNEK 176
                  +  L      +               A  +     +  +  + E +     E+
Sbjct: 124 LLAQGLELSPLEATLAYAGIWEDTGGFSYPGTTAQDLQAAAQLLRQGAEPERVREWVRER 183

Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST 236
           YG         L        +  VE      +    A        L       + +  S 
Sbjct: 184 YGPEARELLSQL------LRQSRVEERHGFRLLIAAAKEEGYVPALAPLAHTLLDLYDSA 237

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
           G +     L             L                     +              L
Sbjct: 238 G-VLMELELGKETLFIARSRERLDVGGWLAEVGGGGHARAAFAKVEGPPDPTEQLLLSRL 296

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
              LD     RE + R   V  E    +  + +  L                  +     
Sbjct: 297 EAHLDAGPTLRERMSRPVAVLPEGLTVAQALEELRLRGFGGMPVVAAAALAHTRHAAFAQ 356

Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKKSALI-TADRNLARRVKLELTRFGINIDI 415
            +  L E    R   I+    L  +L     ++ +     R +    +  L      +  
Sbjct: 357 RNTRLEEGQAVRVYGIARRRDLERALRHGLGEAPVRGVLSRAVILPPQTPLHEAEQALKS 416

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL--SRAKNALEL 473
            AG  L        L  L     + + + A     +  LA+  +             ++ 
Sbjct: 417 GAGRVLVGEPLGDDLYWLEGIFTRTDLYRAPPPGPRGNLAQQIWERLPRGVQEVLERIQQ 476

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT- 532
               G           +L+                 +  S   +     L   ++     
Sbjct: 477 AYPEGGIYVVGGTVRDALLGMGGPDLDLVLEPLTVFASQSNHRRNRLDELARQLVGWFGG 536

Query: 533 --PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
              L           G     D  +       +       +  ++  + E +  +     
Sbjct: 537 SFGLHVAFGTARVKLGFGLEVDLAEAREEYYPHPGALPQVRPSSIARDLERRDFTVNALA 596

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
           +  +      +  + +  +   +          +  +  + G   +  L F         
Sbjct: 597 LRLSPRLEIVDLFDGLADLEARLLRPLHPLSFVEDPSRILRGVRLAARLGFRFAPEALAQ 656

Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
                +           ++ +L L   E    +A            +    +  +     
Sbjct: 657 IPSAVQPEVLAQASKSRLRDELLLTLGEASATRALGLLAELGVAEPMFGMGASPQVREAF 716

Query: 711 IASRWLQRLLVLGGTDFFDNL------KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
            A   + +            L          + +L          +   + R  P  P +
Sbjct: 717 AALEPILQTTSDPEAAVAARLYLLLHFHPDPEGFLTRYNLPRRYAEGLRHLRFPPEDPDD 776

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHNIITELIKKR 823
            +         + L  +           L      +   P     G +   +    ++  
Sbjct: 777 IRKFVGLPEAFRALHPERALWLLTPRRMLMGRDLLEMGLPSGPKIGEVLRKVAEARLRGE 836

Query: 824 INKNTPEIN 832
           +     E+ 
Sbjct: 837 VLSYEDELE 845


>gi|254520983|ref|ZP_05133038.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas sp. SKA14]
 gi|219718574|gb|EED37099.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas sp. SKA14]
          Length = 1226

 Score = 42.6 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 84/851 (9%), Positives = 186/851 (21%), Gaps = 86/851 (10%)

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                   AL  E+       A +FL       T+RL  L  +  V     L+   A  L 
Sbjct: 324  APLARYVALLAERDAWLRATALNFLHRLRDEATQRLQALKRTRRVQTYDDLIDGVALALE 383

Query: 224  KGTKGPII-----------IAGSTGSIPATARLMSTVANHPNGAI-------VLPGLDCH 265
               +  ++           +     +      +  TV               +    D  
Sbjct: 384  GPQRLALVRQLRAQYRIALVDEFQDTDDRQWGIFHTVFGDSPEVRELGLAPALFLIGDPK 443

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                 +      +          +     +       L   +      G  +        
Sbjct: 444  QAIYGFRGGDIHTYLKAKQVAQQAPVLDQNFRSRPAVLRALQALYDNGGEDAFLERDIQF 503

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
               +       +D          +            + AD  R+ A    +A    +  +
Sbjct: 504  EPVRPGGVRIDADYLRDGRAAVALTLRVLRSGGDKAMSADASRDAATQACVAAIHQVLVD 563

Query: 386  KK--------------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
             +                A++      A  V+  L   GI    +    L  T  +  L 
Sbjct: 564  ARAGNAVLRGRPVQPGDIAVLVRSHREATLVQRALAAVGIPAVAAGKQSLFATHEARDLR 623

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR---GNKNSYDIMDL 488
            +LL A+ +  D   +   +   L             +  L+          +  +     
Sbjct: 624  ALLLALLQPADEGRLRAALATVLLGQRASAIAAMEREGDLQRGFQAQLLHWRERWQRGGP 683

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT--PLVTYKTNKNSTCG 546
             +++ D  A Q           R      +L  LL +   Q +    L+ +   + ++  
Sbjct: 684  FAVIADVCAAQGERLLALIDGERRLTNYLQLGELLQEASAQALGMHGLLDWLQGQMASAD 743

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE--GKTLSSLFSKIIETGSCIKANAIE 604
                    +L     +   +  H+     +         +           +   A   +
Sbjct: 744  QDDEQQLLRLESDARRVQIITLHKSKGLEYPLVFLPFVGIDGGAPNTASHCTVHVAGERQ 803

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
                + +    ET   + E+         L   L   +  +   + +      T   P L
Sbjct: 804  LHWKLDKNEAWETASAQREREQRAEDARLLYVGLTRAEHALWIAVGDLAGLAKTRIAPLL 863

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
              +     +           A   ++A      +         +P     +    L    
Sbjct: 864  GDLQALRAHADVHIDNSEVPASLPQLAAEVEGELPAVRALTRRVPHDWWVYSFTQLAHAD 923

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS---------EI 775
                 +++                 + P                                
Sbjct: 924  AGAGSDIEAAATELPAPAADEPAGPELPLEPALPEPAAAAEDSTPIDPRFMGSRFGNVLH 983

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTD-------------RGTLFHNIITELIKK 822
            + + N  +A +      L+      +   +                  L   +   L   
Sbjct: 984  EAMENVDFAAWGGWQPGLEAPEGQAEVLRKALHDEGYADADLEDGVAVLVPLVGHTLTVP 1043

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
                         ++  +  F     P  +  + + L      S        +   ++  
Sbjct: 1044 LPEGGALHSLDEGERRAEIDFHFAIEPTAVPALLQVLHAHGVSS------ARRGFGQRRR 1097

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-------KKETAQKLIDP 935
            +       I+   +              G   + DYK+   P                D 
Sbjct: 1098 LEGLMTGMIDLTYVR------------DGRWYVLDYKSNRLPGYSPDLLAIAMRHSEYDL 1145

Query: 936  QLSLEAAALKA 946
            Q  +   AL  
Sbjct: 1146 QALIYTVALHR 1156


>gi|262194077|ref|YP_003265286.1| hypothetical protein Hoch_0777 [Haliangium ochraceum DSM 14365]
 gi|262077424|gb|ACY13393.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
          Length = 387

 Score = 42.2 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 47/141 (33%), Gaps = 15/141 (10%)

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI-- 824
               SFS + +    P +     + + +              G+  H  +  L+++ +  
Sbjct: 1   MTRLSFSRLSRYEACPLSYKLHYLDQHEAGDSV-----PLAFGSAVHAALEHLVREHLAE 55

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPP-HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
            +  P     +  +  + + +  L    +      L H+        E+ +   ++ + V
Sbjct: 56  ERVGPLCAERVAVLWQNAWTESGLSGLSLFREGLALLHRFVR-----EQGVVDHLDVLAV 110

Query: 884 NIPAKMAIESIGIHLTGFADR 904
               ++ +   G  + G+ DR
Sbjct: 111 EQEFRITV--GGFEVLGYLDR 129


>gi|256378472|ref|YP_003102132.1| thioester reductase domain protein [Actinosynnema mirum DSM 43827]
 gi|255922775|gb|ACU38286.1| thioester reductase domain protein [Actinosynnema mirum DSM 43827]
          Length = 2107

 Score = 42.2 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 89/808 (11%), Positives = 187/808 (23%), Gaps = 42/808 (5%)

Query: 41   PLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN 100
            P  +A   +   T+   + +      + G ++ +   +++L D   +  T          
Sbjct: 511  PADVAHALVATRTRFDRRAVV-----VGGDRAELASGLRALADGSPDALTGSGRPGGLAL 565

Query: 101  PPVSNIQRLLELARLILI----WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156
                   +   + + +      +   L + I  +  E       S   A+     L D +
Sbjct: 566  LFAGQGGQHAGMGQGLRAAHPVFARALDEAIDAVDAELDGHAEHSVRAALERHDGLHDRM 625

Query: 157  DIIETEEKKWE-DLHALKNEK-YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
               +T     E  L  L         W+      ++A+ +    L    A+  V  +  L
Sbjct: 626  VYAQTALFALETALFRLVESWGLRPDWVAGHSVGEVAAAHAAGALSLGGAARLVAARGRL 685

Query: 215  MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
            M   A                          +  VA       V+         A+    
Sbjct: 686  MDGLAPGGAMIALEATEAEAERELAGEP---LVGVAAINGPRSVVISGAHRPAEAVAARF 742

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
              +   +     + ++H       L +F  I          V          +    L P
Sbjct: 743  AARGRRVKRLRVSCASHSPLMEPMLAEFHRIASTVEHAPPRVPLLSTVTGRPVEDGELGP 802

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
            D         +       +     V  +          + A  +    + + + +  +  
Sbjct: 803  DHWTRHARRSVRFLDAVTRLDELGVTALLEVGPDGALTAQAQRVLDDSERDGRLAVPLLR 862

Query: 395  ---------DRNLARRVKLELTRFGINIDISAGIPLST-TLHSSILTSLLNAIFKLNDFM 444
                        L       LT     +      P+   T         L A        
Sbjct: 863  PGHDEPRTAATALGALCAAGLTPDWAAVHGRDARPVELPTYPFQRRRYWLRATGSTEVAD 922

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
                   HPL            A  A  L        +       + ++D      + T 
Sbjct: 923  LGLAPADHPLLGSLAQRADADTALLAGRLSTAAHPWLADLPGSADAALVDLALRAADRTD 982

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                +         LA      +   +           +       +D     V      
Sbjct: 983  CDVVRELSLHGPVRLAAGDATTLQLAVAAPDDAGERAFTVHARADAADGAWELVASGALA 1042

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                    P   +   G     + + +   G  + A      ++   L            
Sbjct: 1043 RQVALPAPPAEEWPPPGAQAVEVDAAL--AGLGVTAVLRRGDELFADLA---------PP 1091

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-KYIGQ 683
            +  L     L   LL+  T    G +     +        +      + L   + +    
Sbjct: 1092 ADRLAAGFGLHPLLLHAATAPRPGGDATRPRRWRDVRLHATGAGALRVRLTPGDGRSFAL 1151

Query: 684  AAHDFEMA--NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
             AHD           +    + R       A   +                     +   
Sbjct: 1152 TAHDRSGLPVLTVGEVATAPADRGRGAEHDALFRVTWEPTRLPAADRAPEWAWDSDHRPG 1211

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
             R  +    +P   RP    P       ++ + ++ L+ DP    A    +L  +     
Sbjct: 1212 GRAPEVLLLRPSPARPHDPVPAAHDLLRHAMARLRDLLADP----ALAATRLVVLTEGAV 1267

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTP 829
              D  +   L    +  L++   +++  
Sbjct: 1268 ATDAAEEADLAGAALCGLVRSVQSEHPD 1295


>gi|309791173|ref|ZP_07685705.1| chromosome segregation protein SMC [Oscillochloris trichoides DG6]
 gi|308226735|gb|EFO80431.1| chromosome segregation protein SMC [Oscillochloris trichoides DG6]
          Length = 1192

 Score = 42.2 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 64/768 (8%), Positives = 168/768 (21%), Gaps = 47/768 (6%)

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA--KNLADIIDIIETEEKK 165
           R L        W     +  +       +   +  A    LA    L  + + +    + 
Sbjct: 224 RTLLERHFASQWAQASAETARTRAEVERMQHLLDHARTAQLAASHELRGLRESLRERREA 283

Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
              LH  ++             L I  +  +              +        +H    
Sbjct: 284 LGLLHQ-RSSDLHRRAETLQRELAIDGERLSALSRRG-----EDLERRQQELSTQHAEDE 337

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
            +   ++A    S  A         +          +   +   + +T            
Sbjct: 338 ARRTQMLAEVQQSEAALEDQRHAQRSAEAALAESDRVRQMLGRELRSTQEAALKAAARVA 397

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
              S   Q     +   L+  R ++  L   +     ++     +               
Sbjct: 398 EVASRAEQVRTQTV--RLEHDRSELAALATHTETQVAQAQTHLAATQTKLAEAEDVRRST 455

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405
             +  + +     +    A  E + A +     R  + + + +   +T        +   
Sbjct: 456 AEQERSARSAREALRTERAQQEDQCAAA-----RRRVADLEARLESLTRLARSYTGIFAG 510

Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL-VKHPLAKFGFPEKYL 464
           +       + S     +          +   I    +      + +   L      +   
Sbjct: 511 VRAAMQWAERSGRRGFA---------LVQTIIRTPAEIETAIEVALGSRLQHVVVEQWQD 561

Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
           +            G      +  ++      +   K +       +    +  +    +V
Sbjct: 562 AEEAINELKRTGAGRATFLPLDTIRGGGRSDLGGVKIDGVAVLGVAADLVQYDQTYAPVV 621

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
             +L  +  +    T +              L    +Q+                  +  
Sbjct: 622 QQLLGRVLLVRDLATARAELRRISGGWTIVTLHGEQVQSGGAVTGGAQTKESGVLRRERE 681

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
                  +       A A        R      ++ + +   ++ +      R L     
Sbjct: 682 LRELPDQVAAARQHGAEAE-----ARRAEIEAQIQAQTQTLRSIEVQLRESQRTLEVSRA 736

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL------- 697
            +      +      +     R  +   +L+  E      A     A             
Sbjct: 737 AVDQATRRLAQAEQERGWAAQRQERLAHDLRRLEDEAANLAEVHTTATNAVTTAEAQLAE 796

Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
           + +R     +    A   L  L    G        +R        R  +   +    ++ 
Sbjct: 797 VRSRQETAAHADRQAQEQLAELRAAVGAAEGQQRAQRTLLAAHERRLAETQHQLVAVRQS 856

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
                 E      + + IK          A     ++ I   +   D  ++         
Sbjct: 857 LAELEQERAQIEQTHTRIK----------AEHHALVEEIDQLRSAIDPAEQALAADETAQ 906

Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
             +++R    T  +         +  E +      D I+     +   
Sbjct: 907 NELEQREQAATQTLLEQEAAYSRAAVEAQRASDRQDAIYERAAAEDID 954


>gi|158312845|ref|YP_001505353.1| superfamily I DNA/RNA helicase [Frankia sp. EAN1pec]
 gi|158108250|gb|ABW10447.1| Superfamily I DNA and RNA helicase and helicase subunits-like protein
            [Frankia sp. EAN1pec]
          Length = 2622

 Score = 42.2 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 62/586 (10%), Positives = 129/586 (22%), Gaps = 33/586 (5%)

Query: 85   VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
                       ++ L P +  +    EL+  +L    ++         ++     +  A 
Sbjct: 1138 ALALSALREQRAFGLPPELGELPTRSELS--VLAHIERVALTAAKAAEDALSRQAVLMAP 1195

Query: 145  AIWLAKNLADIIDIIETEEKKWED-----LHALKNEKYGMWWLL---AADFLKIASKYWT 196
             I  A  LA   D          D     L A+        W+    A  F   A+  WT
Sbjct: 1196 VI--ADALARAGDEAAERMAAGADDVRRALDAVGRRAVRQQWVADALADAFAGRAAVLWT 1253

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            +      A +     +  +      L  G +G     GS  +   ++ L         G+
Sbjct: 1254 KVAAAAPAIAEASQAVVELGLHRVELPTGGEGR----GSDLTGLLSSALALREHMEAGGS 1309

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            +           A           +T  +          L   +      R         
Sbjct: 1310 LRRLFRSKAQKDAGLLLDGTTVDGVTPRSPELLDLALCRLRAEVALEAATRAWSLLGVAP 1369

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
               +     +   +        +       +++  +      V  I  D+    A   A 
Sbjct: 1370 DPAVELEVRLARLTEAQDAARAIDVAVAARDRLAALLDAL-GVETITLDSPTSCADVGAA 1428

Query: 377  ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH--SSILTSLL 434
                 L ++   +     D                 + + A    +       + L +  
Sbjct: 1429 VNAHRLRQSATVAGTQLRDLTADLVAAAGQPDAVPELALLAIAVEARDPAEYVAALEATA 1488

Query: 435  NAIFKLNDFMAIATLV-----KHPLAKFGFPEKYLSRAKNALELVALRGNKN-------S 482
             A+         A L+      HPL         L+      E                 
Sbjct: 1489 GALNGRARARRRAELLGRLREAHPLLADLLALGNLTAGNPNPEWGGHGSAAGGAGGWNSP 1548

Query: 483  YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP--LVTYKTN 540
                          A              L+    E            +    L   +  
Sbjct: 1549 NGFTAGPFSAGGFAANGFGGGGFGMTGVGLNGVGPERMESFGRAWSHAVAATWLARVRAV 1608

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
              +       +    +     +       +        E+   L +    +   G     
Sbjct: 1609 DQTDLDADLDAADELVASATAELAGALAWKHCLERMGTEQSAALRAYADAMAAGGRFTGR 1668

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            +A  +       +                +L T+ +   +FD +I+
Sbjct: 1669 HAERYRQAAREAMRIAQTAVPAWVMPISEVLSTIPAVRDSFDVVIV 1714


>gi|301118604|ref|XP_002907030.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262108379|gb|EEY66431.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 6248

 Score = 42.2 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 87/813 (10%), Positives = 191/813 (23%), Gaps = 78/813 (9%)

Query: 87   EKFTADLLLSYNLNPPVSNIQRLLE-LARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
            +  T   L S       + ++R+ E   + +     +L   +   + E+         +A
Sbjct: 4055 DANTLAALESSLKEEKATELRRIAENETQELSALHARLRGQVGAAFAEADRKAKRRCDDA 4114

Query: 146  -IWLA---KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201
               LA   K L  I      E +      AL+              L+  ++  +ERL E
Sbjct: 4115 NSRLASSEKELDGIFRE-HEEGR-----RALRESLGIEQRRQQDKLLERMARRRSERLAE 4168

Query: 202  L------NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
            L        S  +  Q            +     +I          T + +  + +   G
Sbjct: 4169 LKRERPSGPSEELTQQTMQELNNEHERERLRLEDVIND-------QTNKALQELDDKVRG 4221

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH---PQYSLAKLLDFLDIKREDVKR 312
                   +  +         E      +       H    +    +   FL   +     
Sbjct: 4222 K------ETSLQVETRRLRAEAEAAQAAREALALAHCAEVERVTHEFYVFLGAGQAQELL 4275

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
               +  E     +   +S L     +            + +       L E    + +A+
Sbjct: 4276 SSVLQAETQSVMVDDLESELQRLHDEYDRDWGALKARLDDETRLRKAQLAERLQRKRQAV 4335

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
                AL        + +            +     R  + ID SA +   +   +S+   
Sbjct: 4336 QNNTALSPEERRVAETA------------LDRAAERENMEIDASAAVAARSLRLASL--- 4380

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN--SYDIMDLKS 490
                             +    A  G        A       A R  +     +    + 
Sbjct: 4381 --------QAKEQATDTLTATFASKGDDLDAALEATRKQHDEAQRKLRESLEMERRKQEQ 4432

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            L+ +R+  ++               +K     L   +   +                  +
Sbjct: 4433 LLQERLRQRRAARKAETEPIPTHGSEKAEEEELERELEAKLCAEEAQAWTALREREQQEV 4492

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
                        +  LD+         EE  +       ++ E    + A+       + 
Sbjct: 4493 EAILGPLDAAAGH-RLDDAELAERRAREELERLALEHDRRLAELRDSLAADKKRQQLALR 4551

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV--- 667
              +     K    ++  + +     S        +L    E       A+   + R    
Sbjct: 4552 EKLR---RKRDQRRADGIAVSDAEASEEERRAMEVLEASFETNLASAEAEVREIRREKET 4608

Query: 668  -MQSDLNLKTAEKYIGQAAHDFEMANG--TRHLIYTR--SLRENNIPTIASRWLQRLLVL 722
             + + +   +A K   +AA     A       +      +             + R + L
Sbjct: 4609 ELLAQVCALSANKAAEEAALMLLDAARLEAERVRAEYEAAFTSRVQQPEDDGSVDREIAL 4668

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                    +K R       T       T +  +KR       E+        +  QL   
Sbjct: 4669 VQRAHARGVKSRRDQLDAETAARKAALTARLEHKRRAARKGDESGKTEADIEKALQLEEQ 4728

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
                       +       +     +R       +   +++   +   +I   +     +
Sbjct: 4729 QELGAIEHERAVKERELDVEAAQEKER-------LANALREAHERGAADIERQLAACKQA 4781

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            H  +           R          L    + 
Sbjct: 4782 HDIESTKLDETLRAERARQELALKQRLNARRQR 4814


>gi|271965481|ref|YP_003339677.1| ATPase AAA-2 domain-containing protein [Streptosporangium roseum
           DSM 43021]
 gi|270508656|gb|ACZ86934.1| ATPase AAA-2 domain protein [Streptosporangium roseum DSM 43021]
          Length = 868

 Score = 42.2 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 61/600 (10%), Positives = 155/600 (25%), Gaps = 51/600 (8%)

Query: 63  EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI-------QRLLELARL 115
             + +  +   ++P + +  DV  ++  ADL    +  P VS         +    L+RL
Sbjct: 34  LLLALLDQPDGLIPRLLTKADVDLDRLVADLEAELSRRPKVSGPGVDPGQVRVTQRLSRL 93

Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
           +   + +   +  D      L + +    +   A  L      +  +    +        
Sbjct: 94  LETAKREADRLKDDYVSVEHLLVALLEEGSETSAGRL------LRQQGLSRDAFLR-VLT 146

Query: 176 KYGMWWLLAADFLKIASKYWTERLVEL------NASSPVGYQIALMRAEAEHLMKGTKGP 229
           +      + +   ++A +   +   +L          PV  + + +R   + L + +K  
Sbjct: 147 EIRGNQRVTSAMPEVAYEALAKYGRDLVADAAAGKLDPVIGRDSEIRRVIQILSRKSKNN 206

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            ++ G  G         + V             D      +++               + 
Sbjct: 207 PVLVGDPGVGKT-----AIVEGLAQRINNGDVPDGLKDKTVFSLDMGALVAGAKYRGEFE 261

Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
              +  L +++         V  L  V         + + + L P               
Sbjct: 262 ERLKAVLTEVVAAEGRILLFVDELHTVVGAGAAEGAMDAGNMLKPML------------- 308

Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
                   ++ +I A    E    I      +L+   +   +       A  +   L   
Sbjct: 309 -----ARGELHMIGATTLEEYRRHIEKD--AALERRFQPVMVDEPSVEDAISILRGLRER 361

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
                   G+ +      + +      I           LV    A        +    +
Sbjct: 362 LEVFH---GVTIQDGALVAAVVLSHRYISDRFLPDKAIDLVDEACAMLRTEIDSMPAELD 418

Query: 470 ALELVALRGNKNSYDI-MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
            L    +R       +  +       R+   +        ++       E    ++  + 
Sbjct: 419 ELTRRVMRLEIEEAALAKEEDQASRARLEELRKELADLRAEADAMRAQWEAERQVLRGVQ 478

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                +   +T       +  ++   +L    L  +      +   L  ++    L    
Sbjct: 479 TLREEIERVRTEAERAERDYDLNRAAELRHGKLPELERRLQAEEERLLAKQGAGRLLREV 538

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
               E    +  +    I +             +++     ++G  E+  L  D +I   
Sbjct: 539 V--TEEEIAMIVSRWTGIPVSRLQEGEREKLLHLDEILHERVIGQDEAVRLVADAVIRAR 596


>gi|323453463|gb|EGB09334.1| putative formate/nitrite transporter [Aureococcus anophagefferens]
          Length = 1144

 Score = 42.2 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 69/672 (10%), Positives = 137/672 (20%), Gaps = 48/672 (7%)

Query: 167  EDLHALKNEKYGMWWLLAA----DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
              + AL        W+       +F    +  +   +    +        A + AE   L
Sbjct: 377  SRVRALGAVAGRPHWVRLRPRLEEFFAAVAPLYELAIYTHGSRQYAEAVRAALEAEVPGL 436

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP------TAIWNTITE 276
                 G ++   S    P      S     P GA     LD  +             +  
Sbjct: 437  S--FGGRVV---SRDCCPDLRGEKSLERLFPGGAARALILDDRLDVWTRGEDQTPRVLVV 491

Query: 277  KSTNITSSNTTYSTH------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK- 329
            +             H        +S   L+             G+    +      +   
Sbjct: 492  QPYTYFGKALADPAHADGDSQLSHSARALVAAHAAFYAGGGASGDAVACLDAARGAVFAG 551

Query: 330  -SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
              F     +D     + E     +    +D   + A        +  +         ++ 
Sbjct: 552  CVFSFSPPADAWTARLAERYGAALAGAAADATHVVATKAPPGHGADNVVHLDWFWYCERP 611

Query: 389  SALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
                       R R   E            G         +   +L     +    +   
Sbjct: 612  PPPPPPAVPPERLRYACERPVLAGPSSRYKGRGGLGHALEAETAALSALGAQDAVHVLGL 671

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
               K   +        L+R             + +                Q +      
Sbjct: 672  LARKGTPSMKQRVALDLARFYRKALEREAAATRGAARGGASGDAAAPESDAQTDEAWPGA 731

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                     + LA +    + +    L ++             S   +L +         
Sbjct: 732  APRSRRTPAEILANVFARPLARHSATLFSHAVRGLLLRKGGPSSGELQLPLELCHPFGGG 791

Query: 568  EHRKLP-NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
                   + W       +       +   S    +      ++T L D  T +P      
Sbjct: 792  PDGPAALSAWCAYLANAVRPGTPTRVAWHSQTWVDPYRQRGVVTELFDAATGRPGPSPHL 851

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
                L  L++  ++FD +I    +E                                   
Sbjct: 852  R-EALHALKACGVSFDDVIFAAESEACVAAEQGNGRAAPGAPDGGSGGPAPRSKAL---- 906

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWL--QRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                             +  +     SR L   R   +                      
Sbjct: 907  ---------------PGQPWSKLGHMSRLLSVLRDSRVREEVAAPPWHPGYGAPPPPHHS 951

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
                   PHY +  PFP               +L++DP  +             F+   D
Sbjct: 952  RPPCDFAPHYGQLAPFPLAHPHDPRLGPMHDPRLMHDP-RLMHDPRFGPPPHDPFRGAAD 1010

Query: 805  RTDRGTLFHNII 816
                 + F   +
Sbjct: 1011 VLQFPSFFRERL 1022


>gi|301776663|ref|XP_002923762.1| PREDICTED: LOW QUALITY PROTEIN: spectrin beta chain, brain 3-like
            [Ailuropoda melanoleuca]
          Length = 2312

 Score = 42.2 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 44/424 (10%), Positives = 106/424 (25%), Gaps = 32/424 (7%)

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
            +   L  L  +    +     S  ++     + ++       +        +    +   
Sbjct: 623  VHGCLAELQEQAARRRAELEASRSLWALLQELEEAESWARDKERLLEAGGGSGAGPLVVA 682

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
               V ++EA+    E   +A   R  L +     A+      +         +    + +
Sbjct: 683  LQ-VRVVEAEQLFAEVTEVAALRRQWLRDA---LAVYRMFGEVHACELWIGEKEQWLLAM 738

Query: 416  SAGIPLSTTLHSSI--------LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-- 465
                 L                + SL+  +  +N  +       HP +      +     
Sbjct: 739  RVPDSLDDVEVVQHRFESLDQEMNSLMGRVLDVNHTVQELVEGGHPSSDEVRSCQDHLNS 798

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRI-ATQKNNTHVPHWQSRLSEEDKELAVLLV 524
            R    +ELV  R  + S  ++    ++       Q          +  +    +  +  +
Sbjct: 799  RWNRIVELVEQRKEEMSAVLLVENHVLEVAEVRAQVREKRRAVESAPRAGGALQWRLSGL 858

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT- 583
            +  LQ + P       + +       +   +L     +                E     
Sbjct: 859  EAALQALEPRQAALQEEAALLAVRFPAQAARLHQGAEELGAEWGALASAAQACGEAVAAG 918

Query: 584  -----------LSSLFSKIIETGSCIKANAIEWIDIITRLI---DGETVKPKIEKSSTLF 629
                             +  E    ++      ++    L+        +    +     
Sbjct: 919  GRLXXXXXXXXXXXXLVRAQEAAGGVEGPLPGSLEEADALLARHAALKEEVDQREEDYAR 978

Query: 630  ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
            I+   E+ L N    +  GL    W      +  L       L L  A +     AH ++
Sbjct: 979  IVAASEALLANDGAELGPGLALDEWLXXXXPHLELGWHKL--LGLWEARREALVQAHVYQ 1036

Query: 690  MANG 693
            +   
Sbjct: 1037 LFLR 1040


>gi|56419728|ref|YP_147046.1| chromosome segregation ATPase [Geobacillus kaustophilus HTA426]
 gi|56379570|dbj|BAD75478.1| chromosome segregation ATPase (SMC) [Geobacillus kaustophilus HTA426]
          Length = 1187

 Score = 42.2 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 85/803 (10%), Positives = 204/803 (25%), Gaps = 28/803 (3%)

Query: 99   LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
            ++  +  +Q++L LA   L       +++K+    +             LA     + + 
Sbjct: 279  IDESIDGLQQVLLLASEELEKLEGRKEVLKERKKHAARRKAQLDDITAALAAKRRRLTEQ 338

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
            +  E ++   L A             A F    +    E          + ++ A ++ E
Sbjct: 339  LHAEREELARLEAGAAALERELKEKQALFSAHEADIEEEIERRKGDYIDLVHEQAALKNE 398

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
              H+ +      + A  T    A  R ++           L      +  A+      ++
Sbjct: 399  RAHVEQALGK--LHAKRTALDEANRRHLAEREQLEQKRAALWAEQTRLEQALTEAHNRQA 456

Query: 279  TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                +     +   Q+    LL      R+  K           R   + +         
Sbjct: 457  ALAAALAAQKTELEQH--EALLHQARQYRQQTK----------ARQQWLEEMQHDYSGFV 504

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-----DENKKKSALIT 393
                ++L+ +        + V LI   +  E AI  A+   M       ++  +++    
Sbjct: 505  QGVKEVLKARDLLPGIHGAIVELIRVPDRYETAIETALGGAMQHIVVDSEQAARQAIHYL 564

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  R   L L                    + +  +     +      AIA L+ H 
Sbjct: 565  KTNGYGRATFLPLDVIQARALSERERAAIDRHPAFVGIASELVEYDRAYRAAIAHLLGHV 624

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            +                      R    + D   +              T     ++R  
Sbjct: 625  IVTADLKGANELAKLLH-----YRYRLVTLDGDVVSPGGAMTGGGAAKKTASLLSRNREL 679

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            E        + + I +    +                    +      + +   +  +  
Sbjct: 680  ETLSAKLQEMDETIARLERAVAA--KRHELAEQEAQADALQEEVAALREALQRQKDEQRE 737

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
              W ++      +L+ +         A     +  I R ++    K +        +   
Sbjct: 738  LEWQKKRIDERLALYDEEKANHEREMAELNRRLGAIDRQLEQLAEKLQAIDDDISRLQAQ 797

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++     + L      + +    T +    +R    +   + AE   G    + E A  
Sbjct: 798  KQTEQTTKEALQAAITEQKIALAETKERVKHARRKVEEWEAELAETIRGLKEAERERAAL 857

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
               +       E        +   +   L         +   Q  L+   +    TK+ H
Sbjct: 858  DAEMEAPEWNEEEIEQLRKQKLEDKQKTLELIASRREQRLDFQRRLEHLEQEWKETKRQH 917

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
             +        E +           L+                 P      +   R  L  
Sbjct: 918  KQLADVVKDEEVKLNRLDVELENLLVRLREEYGLSFEAARSAYPLEIGADEARKRVKLIK 977

Query: 814  NIITELIKKRINKNT--PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
              + EL    +        ++   + + +   + E     +  +   +  ++   F    
Sbjct: 978  RAMEELGTVNLGAIDEYERVSERHRFLSEQKTDLEEAKATLHQVIDEMDDEMKKRFFATF 1037

Query: 872  EKIQSSIEKIFVNIPAKMAIESI 894
            E+I++   ++F  +      +  
Sbjct: 1038 EQIRAHFGEVFGELFGGGRADLR 1060


>gi|221201441|ref|ZP_03574480.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD2M]
 gi|221208004|ref|ZP_03581010.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD2]
 gi|221214000|ref|ZP_03586973.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD1]
 gi|221166177|gb|EED98650.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD1]
 gi|221172189|gb|EEE04630.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD2]
 gi|221178709|gb|EEE11117.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD2M]
          Length = 1236

 Score = 42.2 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 89/904 (9%), Positives = 202/904 (22%), Gaps = 94/904 (10%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAG 234
            W  L A++L  A     ER       S       L  A   H      ++      +I  
Sbjct: 339  WLALIAEWLDTAPAELAERKRTRRVVSFDDLLANLYHALHAHPWLADTLRARYPAALIDE 398

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
               + P    +   +        +    D       +      +     +  +       
Sbjct: 399  FQDTDPLQFAIFDRIFAPAG--PLFLVGDPKQAIYSFRAADLHTYLAARARASACYTLAV 456

Query: 295  SLAKLLDFLDIKREDVKRLGNV-----SNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
            +       ++      +           +    R+   +++    +T    + D     +
Sbjct: 457  NQRSTPAIVEACNRFFQSNPRAFVLDGLDYYPVRAGTRTRAPFADETDPAPSGDFRIWML 516

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---------KSALITADRNLAR 400
            P             A   +  A  IA  +R + + + +           A++        
Sbjct: 517  PGGDGTLLK-RDAHAQAAQACAAEIARLMRGAREGHVRLGETPLSPGDIAVLVQTHRQGS 575

Query: 401  RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
             VK  L  +GI     A   + +T+ +  L  +L AI    D   +   +          
Sbjct: 576  LVKRVLAAWGIGSVELAQASVFSTIDAEQLERVLAAIDAPGDLRRLRAALASDWFGLDAG 635

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN---------NTHVPHWQSR 511
              +     +A           +  +  ++     R+  ++             +   +  
Sbjct: 636  ALWRMEQGDADAQHDAGATDTADAMSWVERFSRYRLLWRERGFAVMWRTFARELRIAERL 695

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            ++  D E  V  ++H+ +      + +     T   L+              +  D +  
Sbjct: 696  MAGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGGGEEAQLRLESDRNLV 755

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT----RLIDGETVKPKIEKSST 627
                  + +G   + +F   +  G   +  A    D                   E ++ 
Sbjct: 756  QIVTVHKSKGLEYAIVFCPFLNDGGLREPPASALPDAREYHDEAGDAVLHYGCDDEAAAH 815

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
                   E        + +            A     SR  +            G     
Sbjct: 816  AARQALREQAAERARLVYVALTRAVYRCYLVAGPYLSSRSTREARRSVLNWLVAGAGRSF 875

Query: 688  FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                          +          S                +   +       TR L  
Sbjct: 876  DAWLGEPPDDAELDAAWRALAGGPVSVAPLPAPARRERLPAGHDASQTLAARHATRVLRD 935

Query: 748  T--------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                           +      P+           +  L+       A  +         
Sbjct: 936  AWRMASFSSLTASIAREEAGVAPVPDDELRPDHDALAALVPGADIGAAATVAPEPPDDDI 995

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
               P     G   H +                   +              P +      +
Sbjct: 996  LVFPRGAAAGECLHRLFELSRFAEPASWPAAALGALHD------RPVEAEPALAERLPAM 1049

Query: 860  FHKISHSFLEHEE---KIQSSIEKIFV--NIPA----------------------KMAIE 892
              ++    +  E       + ++       +                         +A++
Sbjct: 1050 MVRLVDDVVHTELVPGLRLADLDPSKRLNEMGFLFPAPSLDLGALRRLLVTHGYPDVALD 1109

Query: 893  SIGIH--LTGFADRIDLLKSGFVDITDYKT---GDNP--------KKETAQKLIDPQLSL 939
            +  +   + GF D I     G   I D+K+   G  P            A      Q  L
Sbjct: 1110 AGTLAGFIKGFIDMIVEH-DGRFWIVDWKSNHLGTTPDAYGPQALDAAMADHAYHLQALL 1168

Query: 940  EAAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995
               AL     +++      R +A   Y+ ++                A   + + +  L 
Sbjct: 1169 YTVALHRYLRTRLAGYDYDRHIAGYLYLFVRGVRPDWRSGGAPAGVHARRPARELVDALD 1228

Query: 996  EIVT 999
             ++ 
Sbjct: 1229 RMME 1232


>gi|92112829|ref|YP_572757.1| chromosome segregation protein SMC [Chromohalobacter salexigens DSM
            3043]
 gi|91795919|gb|ABE58058.1| Chromosome segregation protein SMC [Chromohalobacter salexigens DSM
            3043]
          Length = 1164

 Score = 42.2 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 78/750 (10%), Positives = 179/750 (23%), Gaps = 49/750 (6%)

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK----- 176
            +           +   +  S  +A    + LA  ID    E  + E L A  +E+     
Sbjct: 287  EAHQARFYETGAAIARIEQSIEHARSRDQQLAQDIDDARRELTELEQLGAHDDERRAALD 346

Query: 177  -----YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231
                        A + L++  +       E  A+     +      +  H  +  +  + 
Sbjct: 347  ERLESIAPELEEAQETLEMLQESLDAADEEATAAQQEWERFNESDRDVAHGAERAQDDVR 406

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
                     A A L + +         +P +D                +      T    
Sbjct: 407  -----RLENAIAELDAQIHKRRQQREEVPDVDALRDE----------RSELREQLTALDL 451

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
             Q +L    D L  +RE  +   + +                   S     D        
Sbjct: 452  DQEALESQRDGLQQQREQAQAGLDDAAAQRDAQRTQLSRLQGELASVEALLDAALADDDA 511

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS--ALITADRNLARRVKLELTRF 409
                      ++      E + +A     ++         A +     +A  +       
Sbjct: 512  ALDAHLAQHGMQQAPRLAERLEVAEPWETAVAWVLAPWLKARVVDASAMAALLGTAPPAE 571

Query: 410  GINIDISAGIP----LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG---FPEK 462
               +D  AG P    L   +  +          +  D  A A  ++  LA       P  
Sbjct: 572  LALLDGDAGAPWAGTLGAQVEGAGALQSWLDTVQCADDEASAWALRDELAPGESVIAPSG 631

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                A           +         +  +   IA  + +      + + S E  E +  
Sbjct: 632  LWLGAGWVRRRGEEASSDGVLVQRRRRETLQADIAALEASLETLEERLQTSREAVERSAG 691

Query: 523  LVDHILQCITPLVTYKTN--KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
             ++ +      L   +             +             +     R        EE
Sbjct: 692  ELESLRLRERELGQRRQQVASREAGLASRLEQLDARARELDDEIAQLTERHAERRLELEE 751

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
             +         ++  S  + +  +              +    +     +   +E + L 
Sbjct: 752  TRERWQAAMHDVDANSQTRESLEKKRREAREKAQSLRQQVAPARERQQQL--AMERQRLE 809

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
             +   L         +       L+ + +    L+  E+   +   +     G       
Sbjct: 810  TERAGLEQQTARSHDQRARLAEKLAMLEEQRATLREPEEETRERLDELLDRRGREEATLN 869

Query: 701  RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760
             +    +      R              D L+ R +      + L         +  +  
Sbjct: 870  AARDRAHQLAETLRD-TEAKRQQHERNLDGLRGRLEEARMQVQALKLKADAEDAQLEELG 928

Query: 761  PPLEAQPRTYSFSEIKQLINDPYAVYARRILK-----LDFIPHFKKDPDRTDRGTLFHNI 815
              +         +  +          A ++ +     L  I  + +  +R D     H  
Sbjct: 929  HDVAGLQEGLDPNATESAWQTRLDEIAEKVRRLGAINLAAIEEYDQQAERRDYLEAQHAE 988

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEK 845
            ++E I+        +    + Q   + F++
Sbjct: 989  LSEAIET-----LEKAIRRIDQETRTRFKQ 1013


>gi|240136981|ref|YP_002961450.1| proline dehydrogenase PutA [Methylobacterium extorquens AM1]
 gi|240006947|gb|ACS38173.1| proline dehydrogenase PutA [Methylobacterium extorquens AM1]
          Length = 990

 Score = 42.2 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 58/630 (9%), Positives = 133/630 (21%), Gaps = 22/630 (3%)

Query: 71  KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130
                P  ++     +      LL    L          L  + LI   R        + 
Sbjct: 4   GPMSAPRFQAAYAPDDAALAEALLREAPLPAATEAAVDRLA-SDLIGAIRADAGHGAVEA 62

Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
                          + LA+ L  + D    +    + L       + +           
Sbjct: 63  LLREYALTTREGLALMSLAEALLRVPDAATADRLIADKLREGDFVHHAVRSESGLAHAAS 122

Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
            +     RLV    +        + R     +       + + G    +     + + + 
Sbjct: 123 WALGLGARLVGPQDTPEATLGSMVRRLGRPAVRAAAHRAMRVMGGQFVLAEE--IGAALK 180

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT-YSTHPQYSLAKLLDFLDIKRED 309
              +G          +      T  +  +   +          +   A L     I  + 
Sbjct: 181 RAGSGTARRSRFSFDMLGEGARTADDAESYRQAYARAIARIGREAGNAPLPARPGISVKL 240

Query: 310 VKRLGNVSNEMYGRS-MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
                  +     R    +             +           ++    + + EA    
Sbjct: 241 SALHPRYTPTQGARVMAELVPVVRDLARDARAHDLNFTLDAEEAERLELSLDVFEA---- 296

Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI---NIDISAGIPLSTTL 425
                +A       D         +           EL                P   T 
Sbjct: 297 ----VLADPSLAGWDGFGLAIQAYSKRCLPVIDYVAELAERHDRRLLALRPRLYPQFATH 352

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
           ++  + S+L     L+         +           Y   A+ A  +    G +    +
Sbjct: 353 NAQTVASVLGLAGLLDRPADEEAGFEFQRLHGMGEALYQRLAERAPGV----GQRVYAPV 408

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
              + L+   +     N     + SR ++     A LL         P            
Sbjct: 409 GGHRELLAYLVRRLLENGANSSFVSRAADPSVPAAELLARPQALVEAPSQARHPKIPLPR 468

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
                    + +            R    +         + +    ++TG      +   
Sbjct: 469 DLFGPER--RNSPGLAFGDGAALRRWTDAVARAAGPADAAPILDGAVQTGRARPVVSPID 526

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
              +  +I+ +     +   + +    +  +         L    +    +       L 
Sbjct: 527 GAALGSVIEADPATAALAMEAAVRGFPSWAATPARERAACLERAADAFVREQGRLLHLLQ 586

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
                 L+   AE         +  A G  
Sbjct: 587 AEAGKTLDDAVAEWREAIDFLRYYAAQGRD 616


>gi|294629556|ref|ZP_06708116.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292832889|gb|EFF91238.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 1587

 Score = 42.2 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 45/468 (9%), Positives = 111/468 (23%), Gaps = 37/468 (7%)

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248
            I +  W       N      +   ++R  A+         +++    G  PA       
Sbjct: 347 GILNGAWKTNEDRQNLLDSSPFNQEMIRVSAK---------LVVDSLPGLAPAEDPAAYL 397

Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308
                     +   D  +   IW       +      T  +        +L   L     
Sbjct: 398 PLLPGRVKESISWADEFLTREIWARTAASPSLPDQDGTLRTPGQLRVHPRLDKDLKQLTR 457

Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368
            ++                 ++                ++   ++     +      +  
Sbjct: 458 WLRMWHECPGRPSDWLHPSVEADSLRSGKVEHILAAAGHERAGVRDWLEAL----VASGT 513

Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL--TRFGINIDISAGIPLSTTLH 426
            EA ++A+ +   L E +   A      ++    +  L     G     +    L  +  
Sbjct: 514 AEASAVAVRILADLIEKRSPFADEARKAHVVLTEEHGLVAPVPGKVFRRADQDGLRESTV 573

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
                 +++A+ +         ++          +     A    +     G  +     
Sbjct: 574 Y-----VVDALAQDPSLAHALNVL-----GIREADAEGRLASVLDQGFDHYGESDWERFW 623

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
           +L      R    K    VP  ++ L     +     V        P+V  + + +    
Sbjct: 624 ELFRQAGIRRLAHKVLERVPDPRTTLRVRTADKHFRPVADC-MLPGPVVDAERDPSIAVD 682

Query: 547 NLSISDWTKL--TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               SD T     +    +       +    WFEE    + + + + +++ +   A    
Sbjct: 683 MTFHSDDTYFFSLIGLRDHPAGGVQPQADEAWFEEYRAAVHASYLRSLDSRAPRPALNRM 742

Query: 605 ---------WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                     + +   L +               +            T
Sbjct: 743 KVEGAAIGGPLHLFRDLSEESRAAFLKALPDDAVVDNWTRQFGAQAGT 790


>gi|239980516|ref|ZP_04703040.1| SARP family pathway specific regulatory protein [Streptomyces albus
           J1074]
 gi|291452376|ref|ZP_06591766.1| regulator [Streptomyces albus J1074]
 gi|291355325|gb|EFE82227.1| regulator [Streptomyces albus J1074]
          Length = 676

 Score = 42.2 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 50/609 (8%), Positives = 120/609 (19%), Gaps = 4/609 (0%)

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
               L   +   +    +ARL++  R  +P   + +        P +          +  
Sbjct: 9   DGAGLPVRLGGPRHREVVARLLVARRRVVPVD-RLVADLWEEPPPGATGAVRTFVAEVRR 67

Query: 155 IIDIIETEEKKWEDLHALKNEKY---GMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
            ++           L               + A  F    ++       +          
Sbjct: 68  ALEPGRRPRTPSRLLATEGPGYVLRPAPGAVDAWHFEAEVARAAGLAPADAAPVLDAALA 127

Query: 212 IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
                A A+              +   + A  R    +         +  LD H+    W
Sbjct: 128 TWRGPAYADFPGARWAHAERARLAELRLHAVERRADALIRSGAPREAVWDLDAHVAEHPW 187

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                         +         L +    L  +       G    E            
Sbjct: 188 REDGWHLLATALLRSGRQGDALGVLRRARRVLADQLGADPGPGLARLEREVLRQADHPDE 247

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSAL 391
             P T D   +        ++           A   RE A++ A  L  +        A 
Sbjct: 248 AAPPTGDEVWSSAAAAYEGSVPARSPARLEATASLLRELAVTGAGGLDAARRHRAAAVAA 307

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
                +     ++        +      P +          +L  + +       A L+ 
Sbjct: 308 AERTGDAELAARVIGVYDVPAVWTRVDDPDAARTVVRAAERVLARLPEDAPETVRARLLA 367

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
               +             A +                 +          + + +    + 
Sbjct: 368 SVAVESRGDALAEGALPRAADPPGRARETWRRRAQQAAAEAESAARRLHDASLLAFALNG 427

Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
              +                  +   +T+       L      +           D    
Sbjct: 428 TFLQSFAHCGQAARRDATGAELVRLARTHGLLGPEVLGRLIRVQALAGLGDLPGADHQAT 487

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
             +   +   + L+ +F+              +        +        +    T  + 
Sbjct: 488 AADRLADRYERPLARVFTTWYRALRTTLTTPADLTATEATEVTEAAYAEAVSLLPTCGMP 547

Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
           G             +        P+  A+  +          L   +    +A      A
Sbjct: 548 GFATGLPALTRLAPVVRAGALPAPEAFAEAEWGPYDPWVRPLLLLGDARPDEAREALRTA 607

Query: 692 NGTRHLIYT 700
               H + +
Sbjct: 608 PRPPHDLMS 616


>gi|163739316|ref|ZP_02146727.1| ATP-dependent DNA helicase RecQ [Phaeobacter gallaeciensis BS107]
 gi|161387386|gb|EDQ11744.1| ATP-dependent DNA helicase RecQ [Phaeobacter gallaeciensis BS107]
          Length = 705

 Score = 42.2 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 46/561 (8%), Positives = 133/561 (23%), Gaps = 57/561 (10%)

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            +   +    +         + + +   + +    +    +A    D+ R +       L
Sbjct: 192 PLAAFTATADQETREEIVEKLFDGEAPRSFLRGFDRPNIHLAFATKDSPRRQ------IL 245

Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             +     +   +    R     +   L   G       G   +              + 
Sbjct: 246 EFAAARKGQSGIVYCGTRAKTEALSAGLREAGHAACYYHGGMDAEDRRG---------VE 296

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                     +V       G  +  +    +A             D+          I  
Sbjct: 297 TRFAREDGLIVVATVAFGMGIDKPDIRWVAHA-------------DLPKSIEAYYQEIGR 343

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK-LT 557
              +       +    ED  L    +D     + P      +       L +++  K   
Sbjct: 344 GGRDGAPAETLTLFGPEDIRLRRSQIDE---GLAPAERRGADHARLNALLGLAEALKCRR 400

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG-E 616
            T L                ++         +      + ++ N       +  ++ G  
Sbjct: 401 QTLLAYFGETAEPCGNCDLCDQPVDVFDGTTAVRKALSAILRTNETYGSGHLIDILVGNT 460

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
           T + + ++   L +    +         +   +      +   +     R+ ++ L +  
Sbjct: 461 TDRVRDKRHDDLSVFACGKEYGKRQWQAVFRQMMGHDLVRPDPERHGALRMTEAALPVLR 520

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
            E+ I         A  +  +    S  +               +L             Q
Sbjct: 521 GEQDIALRRDTISSAKRSPAVKALVSDEDA-------------PLLSALKAKRRALAEAQ 567

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
               +    D T      +  +  P    Q         K+L        +    + + +
Sbjct: 568 KVPAYVIFPDRT----LIEMAETRPSSLDQMARIGGVGAKKLERYGRDFLSVITGESEAL 623

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-----INHLMKQIIDSHFEKENLPPH 851
              ++     D G+L+  ++    +     +  +         + ++     + E +   
Sbjct: 624 HPMRRKLAGRDAGSLYDALMETQTRLARGDDGTDKPLSCSAAQLAKLAQMRPQDEMV--I 681

Query: 852 IDIIWRHLFHKISHSFLEHEE 872
             ++      + + +FL+   
Sbjct: 682 TRLLGERRAERFAAAFLDVLR 702


>gi|315186907|gb|EFU20665.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
          Length = 1008

 Score = 42.2 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 38/376 (10%), Positives = 86/376 (22%), Gaps = 93/376 (24%)

Query: 13  PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
           P +   R ++   +   + E              +T+   T++A +EL++      G + 
Sbjct: 486 PGAGKTRVLVE-RVARLVAEGEGG----------ITVLTFTRKAAEELKARLQGTCGAEG 534

Query: 73  TILPIIKSLGDVVEEKF-TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
                  +      E          Y + P V                        ++  
Sbjct: 535 VWA---GTFHAWAYECLVRFHREAGYEVPPVV---------------------LDEEERR 570

Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                +     A  + L +     ++ ++ E  + E+         G  W          
Sbjct: 571 EVWEEACGRVGAGRVGLGR-----LERLKREGMRPEE----VEGVVGEVW---------- 611

Query: 192 SKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLM 246
            + +   L E  A       +   R           ++G    +++  +     A   L+
Sbjct: 612 -RVYEGVLAERGACDVDDLLLRAARLIDEVEGVREWVRGRCRWVLVDEAQDLNAAQYELL 670

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
             +A    G +V    D       +   + +  +                          
Sbjct: 671 VRMAPGGEG-VVCMIGDPAQAIYGFRGASPEWMDRFVEEYGARV---------------- 713

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
                           R     +                  +    +     V+  E  +
Sbjct: 714 ---------------VRLEESFRCPAEVLEVAEGVLGEGVGRRMRARGGGGRVSAWECAS 758

Query: 367 EREEAISIAIALRMSL 382
              EA  IA  +   L
Sbjct: 759 PESEAEFIARQIEQRL 774


>gi|289568567|ref|ZP_06448794.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis T17]
 gi|289542321|gb|EFD45969.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis T17]
          Length = 906

 Score = 42.2 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 65/595 (10%), Positives = 140/595 (23%), Gaps = 75/595 (12%)

Query: 43  LLASVTIYVPTKRAIQELRSEFI-EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
            L  + +    + A +ELR     +I      +       G++VE               
Sbjct: 45  TLDEMLLITFNRAASRELRERVRGQIVEAVGALQGDAPPSGELVEHLLRGSDAERA---- 100

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
                Q+   L   +  +         +       SL ++  NA      L + +  + T
Sbjct: 101 -----QKRSRLRDALANFDAATIATTHEFCGSVLKSLGVAGDNAAD--VELKESLTDLVT 153

Query: 162 EEKKWEDLHALKNEKYGMW-------------------------------WLLAADFLKI 190
           E      L     ++                                     +   F   
Sbjct: 154 EIVDDRYLANFGRQETDPELTYAEALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAE 213

Query: 191 ASKYWTE---RLVELNASSPVGYQIALMRAE---AEHLMKGTKGPIIIAGSTGSIPATAR 244
             +       RL     +  +      + A    A   M+     +++     + P   R
Sbjct: 214 VLEELERRKGRLRAQGFNDLLIRLATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWR 273

Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTIT---EKSTNITSSNTTYSTHPQYSLAKLLD 301
           ++    +  +  I++   D       +             T+           S   L++
Sbjct: 274 VLERAFSRHSALILI--GDPKQAIYGFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVE 331

Query: 302 FLD-IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
            L  + R+      ++            +    P  +  R   +  + +         + 
Sbjct: 332 SLQTVLRDATLGHADIVVRGTDAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIE 391

Query: 361 LIEADNEREEAISIAIALRMSLDENKKK-----SALITADRNLARRVKLELTRFGINIDI 415
            +      + A  +A  L        +       A+I      AR  +  L   GI    
Sbjct: 392 ALRRHIPDDLAADVAALLASGATFAGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIY 451

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
           +    +  +  +     LL A         +          FG   + L+   +AL    
Sbjct: 452 TGDTDVFASQAAKDWLCLLEAFDAPQRSGLVRAAACT--MFFGETAESLAAEGDALTDRV 509

Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
               +   D    + +     A Q           R  E D      +   + +      
Sbjct: 510 AGTLREWADHARHRGVAAVFQAAQLAGMGRRVLSQRGGERDLTDLAHIAQLLHEA----- 564

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                     G   + DW +                   L  +     + ++F  
Sbjct: 565 ----AHRERLGLPGLRDWLRRQAKA----GAGPPEHNRRLDSDAAAVQIMTVFVA 611


>gi|302527434|ref|ZP_07279776.1| predicted protein [Streptomyces sp. AA4]
 gi|302436329|gb|EFL08145.1| predicted protein [Streptomyces sp. AA4]
          Length = 4314

 Score = 42.2 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 77/794 (9%), Positives = 174/794 (21%), Gaps = 33/794 (4%)

Query: 79   KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138
            ++ G V   +   DLL +           R  +L  L+     +              + 
Sbjct: 1011 RAPGGVTTPEELWDLLEAGRDAVTAMPADRGWDLNSLVSPRGRERTTCATAGGFLDDAAG 1070

Query: 139  PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
              +    I   + LA      +  E  WE +     +   +       F+   +  +  R
Sbjct: 1071 FDAEFFGISPREALAMDPQQRQLLEVSWEAVERAGIDPASLRDSPTGVFVGATTMEYGPR 1130

Query: 199  LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
            + E +  +          +             +        PA     +  A+     + 
Sbjct: 1131 MAEADDDTAGFVLTGTAPSMLSGR--------VAYELGTRGPALTVDTACSASLVAVHLA 1182

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH---PQYSLAKLLDFLDIKREDVKRLGN 315
               L                +           H   P           D           
Sbjct: 1183 AQALRNDECELALAGGVAVMSTPGMFVEFARQHGLAPDGRCKAFSASADGTGWAEAAGVV 1242

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDIL-ENKIPNIQKCFSDVALIEADNEREEAISI 374
            V   +     +          S +           PN +   + +           A   
Sbjct: 1243 VLERLSRARALGHPVLATIRGSAVNQDGASNGLTAPNGRSQEAVIEDALTAAGLNAADVD 1302

Query: 375  AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            AI    +              R   R        +  ++  + G   +      ++  +L
Sbjct: 1303 AIEAHGTGTALGDPVEANAVLRTYGRDRDPRRPAWLGSVKSNLGHAQAAAGVIGLVKMVL 1362

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
             A+       ++      P   +      L   +        R  + +     +      
Sbjct: 1363 -ALRHELLPRSLHITEPSPHPDWASGRIELL-TRPVGWPRQQRVRRAAVSSFGISGTNCH 1420

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLV-----DHILQCITPLVTYKTNKNSTCGNLS 549
             I  +    H P      +     L   ++       + +    L       +      +
Sbjct: 1421 LILEESPEEHAPVAGRDDAGRPAALVPCVLSAASPQALREWAARLRRTAAEHDPADIAHA 1480

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
            ++            +  D  + L  L     G+      +  +  GS  +  A    D +
Sbjct: 1481 LATTRAAFGYRAVVLAADRAQLLSGLDAVASGQPHPRAVTGRVRRGSEEERRAQAAADAL 1540

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
            +     E +     + + L     L + +   D       +   WP+  A      R  +
Sbjct: 1541 SSDAAPEALADAYVRGARLAWDRVLRAPVRRVDLPTYPFQHTRYWPRTPAAASAPPR--R 1598

Query: 670  SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             DL +   +      +      +G   ++      ++ +  +  R L R           
Sbjct: 1599 DDLGVLLYQSTWDHVSPAARALSGRWLIVAPAERADDELVQVVCRGLSRGGARAELIAIP 1658

Query: 730  NLKKRGQCYLDWTRKLD--YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-------IN 780
                R          +               P  PL         + +  L       I 
Sbjct: 1659 AGCDRSGVRERLAAAVAGGRADGVLSLLDVSPGEPLLLARPELPPAGLNLLQALLDEDIE 1718

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQI 838
             P     R+ +                   L H +  E  +           ++    + 
Sbjct: 1719 APVWQVTRQSVTTGPEDPPADPLGARTWA-LGHTLRHESPQHWGGLIDLPSALDERAIED 1777

Query: 839  IDSHFEKENLPPHI 852
            + +           
Sbjct: 1778 LRAVLAGGGEDEAA 1791


>gi|209552220|ref|YP_002284135.1| hypothetical protein Rleg2_6380 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539332|gb|ACI59264.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 1157

 Score = 42.2 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 70/683 (10%), Positives = 147/683 (21%), Gaps = 38/683 (5%)

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL------------------A 149
           R  ELARL+      L     +        LP  P+    L                   
Sbjct: 235 RHQELARLLGALPAALELRRLEPDAAGMGDLPRPPSEWFTLLPQLSRDETRLQALLETAD 294

Query: 150 KNLADIIDIIETEEKKWEDL--------------HALKNEKYGMWWLLAADFLKIASKYW 195
           + L  + D IE      + L                L  E       LA    +      
Sbjct: 295 RTLRQLTDEIEAIAIDDKALTVAAHMDMLDQGRARYLAAESDLPKRRLALAEQEAVLVRL 354

Query: 196 TERLVELNASSPVGYQ--IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
              L +   ++P       +L+    + + + +     +A ++  +      +  +    
Sbjct: 355 LADLEQPGHATPEALLLPASLIGIIRDLIERRSGVEAKLAAASRELVRARENLERLGKED 414

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
                   LD      I   +   + +  +   T          ++      +       
Sbjct: 415 GSQKGATVLDPAQLGRIEAAVRRLAGSDLAMRLTLEERTLAQAQRIQVNQFAQLAPWTGD 474

Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
                           ++    T+  +     E ++ ++    +      A      +I 
Sbjct: 475 AVALQRTSAAEPRQIDTWRGQATAVDKRIGDHEARLRDLGTEQALTKARIAAFIAGGSID 534

Query: 374 IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            A A+R+  + +      +T+      R   E  R    +  SAG        + +    
Sbjct: 535 DAEAVRLRDERDAAWQVHLTSLNAATARAFEERMRQDDMV--SAGRLSRAQELAELRQLR 592

Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                          L+    A+     + +              +     +    +   
Sbjct: 593 QREAATAAAIERQRELLAEARAEHDALAERIRGLLPGTIEYDAEASARIATLETWSTKRA 652

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
             +A   +          L  E       L   +         +            I   
Sbjct: 653 AALAAWGDLQRAEETVDGLRGELDGHVATLAASLADAGLGDANHLPVTELMQAANDILAA 712

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
            K      Q           +L   E  +  +       +       +   + D    + 
Sbjct: 713 GKAERAARQAHEKAIGDLSHDLRERERDRQEAEATMAAWDREWAEALSRSWFADKAGSMA 772

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
               +   +       IL   +        +                +  LSR     L 
Sbjct: 773 AVRAMLNALGTLPA--ILKERDDLASRVAAMERDQAQFRGDIAGLLADCGLSRSAADTLA 830

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
              A     +AA         R     + L +                     F  +   
Sbjct: 831 SANALVERHEAARHAAQLRADRQADLEKHLEKQRALEEELAVHNACRKELTGYFGTDSLA 890

Query: 734 RGQCYLDWTRKLDYTTKQPHYKR 756
               +L   R  D    +    R
Sbjct: 891 SVDAFLSQARDRDRLEARAATLR 913


>gi|126324836|ref|XP_001378706.1| PREDICTED: similar to Sfi1 homolog, spindle assembly associated
           (yeast), [Monodelphis domestica]
          Length = 1724

 Score = 42.2 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 57/487 (11%), Positives = 117/487 (24%), Gaps = 18/487 (3%)

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
            RE  + L      + GR     +  L         T          +  ++    + A 
Sbjct: 392 GRERWRALRAWRGYLQGRREKRRQDQLAARFRGASVTRTCFLLW---RAAWAHRRCLHAH 448

Query: 366 NEREEAISIAIALRMSLDENKKKSALITADRNLARR-VKLELTRFGINIDISAGIPLSTT 424
             R EA++  I+LR +L+  K    L      L     +    R  +    +    +  +
Sbjct: 449 QARIEALAARISLRRALERWKHYMLLRAEQAALQAMAEEHHRQRLVLRCFGALRQNVKES 508

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY--LSRAKNALELVALRGNKNS 482
                L  L   +        +     H         +                +     
Sbjct: 509 R----LRRLRKNLAHRQHQATLLQRFWHRWCARADQREDEKQLPQLLQAHSHYRQALLQK 564

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
                  +    R    +      H++ R      E          +           + 
Sbjct: 565 CLQRWALNARGSRHQRMQYARAEGHYRGRSLSVLFEAWRSFSRRQRERRARQEEAVNFRR 624

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                 +   W +      +       R       ++  +   S + +     S  + + 
Sbjct: 625 DLVKRRAFDTWWQKAYRQREV--RLSERMAVLHAEQQVLRHYWSRWRRRAAEQSVERGSQ 682

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA-KN 661
                   R       +   E    +      E+R   F + +L  L    W +  A +N
Sbjct: 683 ATACAHRRRRQLHGAFRVWKENLEAVRAQRAGEARAAAFHSCLLVRLTWSKWRQYVALQN 742

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
               +V+++D +   A                 + ++   + RE        RW+ +L  
Sbjct: 743 VKWEKVIRADCHHHQALLRRSLTGWMTYQG-RVQAVLRHVAEREEWHRRELLRWVFQLWR 801

Query: 722 LGGTDFFDNLKKRGQCYLDWTRKL----DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
              T   +  +K  Q    + R +              R  P  P          S    
Sbjct: 802 ENATAQVEEARKAVQAEGHYRRTVLWKTRPPMPASLEAREAPGVPELGLWAPAGVSAWGA 861

Query: 778 LINDPYA 784
               P+ 
Sbjct: 862 RPEVPFR 868


>gi|53719838|ref|YP_108824.1| putative siderophore non-ribosomal peptide synthase [Burkholderia
            pseudomallei K96243]
 gi|52210252|emb|CAH36231.1| putative siderophore non-ribosomal peptide synthase [Burkholderia
            pseudomallei K96243]
          Length = 3007

 Score = 42.2 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 56/705 (7%), Positives = 147/705 (20%), Gaps = 54/705 (7%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
              R   L A +P       + A  + +++     +           +   +   A     
Sbjct: 1113 PARDAALGAVAPRNDTQRALCAIWQAVLRVPALGVT-DNFFAVGGDSILSIQAAARAREQ 1171

Query: 256  AIVLPGLD---CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
             IV    D         +   +  +     +   +    P   +      +D    D   
Sbjct: 1172 GIVFSARDIFRHQTVELLAAHVRWQQAPDEARRASAGDMPLLPIHHWFFEVDSTHVDHYH 1231

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
               + +   G      +++L    +      +     P   +        EA +    A 
Sbjct: 1232 QSRLLDVPAGVDAAFVRAWLAALVARHDALRLRLRDTPAGWRA----HFAEAPHADASAR 1287

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
             +   +  +   +        A        +  +      + ++A +    T    +L  
Sbjct: 1288 LMVCDVAWAGAPD-------AALDAFFADARRGVRLADGPLFVAALVAAGATGRGRLLLI 1340

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
              +A+     +  I   ++   A++           +       R    + D   L +  
Sbjct: 1341 GHHAVVDGVSWRVIVADLRRTFAQWPALRPDAPGPASDAYQAWARALVAAADSPALHAER 1400

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
               +   +              +    A  +    L              +         
Sbjct: 1401 AHWLRVLRAPAPALRLDRAAGGDATRRATRIGAVSLNAADTRALLADTHRAYRTQTIELL 1460

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
               L +   +    D  R        E          + +            +      L
Sbjct: 1461 LAGLLLAFRRWQGHDALRIALEGHGREADALAHYGAERGLPDVGETVGWFTSYYPQWLTL 1520

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                +       S    I+             I  G+   V           +   +   
Sbjct: 1521 AGAASAPAPAADSVAAAIMAVKTQYRATPRHGIGYGILRYVAGDPELAAEAAAHAPEIVF 1580

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN-----NIPTIASRWLQRLLVLGGTDF 727
            N           A    + + +       +         +           +   G    
Sbjct: 1581 NYLGQFDVANDEAAGIAVLDLSSRDDIAAARSREHALGIDGGVKDGCLAFEIDYSGAAFD 1640

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
             +++   G  ++   R++    K     RP P     A                      
Sbjct: 1641 DESIAAFGAHFMHALREIAAHCKACAAWRPTPEDFPLAAVTQAELDAWHA---------- 1690

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                                     H  +  L      +     + L+ +   ++  + +
Sbjct: 1691 ------------------------RHPSLETLYPATAIQRGMVFHSLLPKQASAYTNQVH 1726

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                              + LE    ++++        P ++ + 
Sbjct: 1727 ARVGGGTFDAARLRHAWQTVLERHAALRTAFVGFEREQPLQIVLA 1771


>gi|262196138|ref|YP_003267347.1| Annexin repeat protein [Haliangium ochraceum DSM 14365]
 gi|262079485|gb|ACY15454.1| Annexin repeat protein [Haliangium ochraceum DSM 14365]
          Length = 922

 Score = 41.8 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 47/427 (11%), Positives = 115/427 (26%), Gaps = 12/427 (2%)

Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL--AVL 522
           +  +   + +  R  +     + L    +D  A  K +      Q++ ++E      A  
Sbjct: 174 AALEREADEMGARVARGPGAAVGLGQHGMDCTAAVKRDVATRAVQAKPADEAALRSNAEQ 233

Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
               +L+ ++ L T +       G  +       +V   +         + +L  E  G 
Sbjct: 234 DAAALLEAMSGLGTDEQAVYQVLGQPAEIVRAVRSVYDARYNRHTGRGLVEDLRDEFGGA 293

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
               +  ++   G  +   A+ +             +        + + GT     L   
Sbjct: 294 DWEFVLGQLTRAGIAVPDAALRYERQDPAAEVQGGARIVASPDVRVAVPGTEVRYALAHG 353

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYIGQAAHDFEMANGTRHLIYTR 701
           T    GL+    P               +       +      A       G   +I   
Sbjct: 354 T---QGLHASSSPYRYQWYMLRDPRTSREHGEPARIDGPDAPQADFRAEFVGNHKVICKV 410

Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761
           + R      + + +     V+       +  ++    +   R+L+         R     
Sbjct: 411 TPRTGGGAGVPAFYEFPQTVVPEGKLAQDALRKAPAAVAPARQLEVLESFLQVLREAEQQ 470

Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821
           P  A     +    +  I    A   +R+   +            DR     + +   + 
Sbjct: 471 PGSALLDPETAEAYENQI----AALRKRLASTEGAERIPIRAVHVDRELARVSPLRAFVA 526

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
           +            +  + +   E   L    +   ++    IS +    E + +    +I
Sbjct: 527 RVPGDAGERETWRLVDVTNP--ESRRLSGEYEGSGKNAHEAISAALAAWESENRYPTGRI 584

Query: 882 FVNIPAK 888
            + + A+
Sbjct: 585 QLEVGAE 591


>gi|54022778|ref|YP_117020.1| hypothetical protein nfa8110 [Nocardia farcinica IFM 10152]
 gi|54014286|dbj|BAD55656.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 7192

 Score = 41.8 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 81/799 (10%), Positives = 172/799 (21%), Gaps = 63/799 (7%)

Query: 99   LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
            L   +    R  +LA  +     +L D+      +              LA+  A  +  
Sbjct: 5517 LEKLIETTGRFDDLAEQVRQVEQRLADLENAGIAQYRPPTAEVADRLDTLARERAAELRR 5576

Query: 159  IETEEKKWEDLH----------ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
            I+      +DL           A                L+                 P 
Sbjct: 5577 IKPRRAMRDDLALRLGVVDDTGAPDEPALSRDLDRTLADLRARVAADLRSGALPVNELPA 5636

Query: 209  GYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVAN-------------HP 253
              +     A+A   +      I  +     G   A    +                   P
Sbjct: 5637 RLRAIAALADAAPEVARAHNRIGRLQDEMAGLAGAWRTQIEAEGGRMVTDRVGIVEGERP 5696

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS--LAKLLDFLDIKREDVK 311
               +  P  D   P A  +   E +    +        P+ +    ++L     +     
Sbjct: 5697 RIVVFGPRPDPESPRAEHDRAFEAALRTAAPVAQAVVRPETTVEYRRVLADRQGEVRSET 5756

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                    +    +   +  +            ++   P+         L +    ++  
Sbjct: 5757 MPPPEVERLSAGGVGGRRLDMTQWRDAEGTWHPVDPTRPDWTTGRDSGTLPKKFTPKDPP 5816

Query: 372  ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI---DISAGIPLSTTLHSS 428
              ++     ++++      L T D    +  +  L            + G+P   T+   
Sbjct: 5817 DGVSGW---AMEDVVNDITLPTDDVPPGQIPESTLPVNAPMAPSQYSTGGVPDGATVFGQ 5873

Query: 429  --------ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
                    ++  +L A          A   +HP        +   R       V      
Sbjct: 5874 HWGADSYNVVRLILMAAQVPKHPAVQAWFQRHPEIGRWVQARPWLRHIPPFGTVFRDYQW 5933

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
             +    +++ +                        + +  V     +         Y+  
Sbjct: 5934 FAPPERNVQPMFRAWDVADHAPPAERVDIPDGLRAEWDREVADWQRVQDWAD--SEYERF 5991

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                    +I +         Q                +  +       + I+    I A
Sbjct: 5992 LADDSDIDAIVEGLDAHRRDRQRELAR--------EVVDAVRAELVDRHRGIDPVGDIDA 6043

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                    I R+      +        +         LL           E    +    
Sbjct: 6044 QLAMVAADIDRVAADLADRFAAADPPAVRSTVEDIRELLLAPDQPASFAAELRPGETPED 6103

Query: 661  --NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
                 L+  M+ D+ + T E+      H     +  R          +       R + R
Sbjct: 6104 AIARLLAEHMRDDVPVFTREQIQQIKDHLMRDEHRVRD-------HTDPGGGYVRRPMDR 6156

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            L  +   + +  L        D+    D   +    +R       EA             
Sbjct: 6157 LADVA--EAWHRLSTGRPLPQDFVLLRDALAESEFLRRHPTAGWREANTHAVGLGHHWDA 6214

Query: 779  INDPY-AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
               P     A        +P         +RGT               ++         +
Sbjct: 6215 DRPPLTDWRAGIPYAPAPLPVDPGWTPPGERGTALPAPDGPETGPPGGRSAQLPPGETAR 6274

Query: 838  IIDSHFEKENLPPHIDIIW 856
              D   +     P    +W
Sbjct: 6275 PGDPATDGAPPHPGDRRVW 6293


>gi|148692243|gb|EDL24190.1| spectrin beta 4, isoform CRA_c [Mus musculus]
          Length = 2579

 Score = 41.8 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 84/787 (10%), Positives = 187/787 (23%), Gaps = 66/787 (8%)

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW---TERLVELNASSPV 208
            L+++ +       + E   +L        W L  +  +  ++ W    ERL+E  + S  
Sbjct: 646  LSELQEQAARRRAELEASRSL--------WALLQELEE--AESWARDKERLLEATSGSGG 695

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA--TARLMSTVANHPNGAIVLPGLDCHI 266
                A    +     +      I+ G  G   A     L         G  V PG +   
Sbjct: 696  AAGTAGGAHDLSSTARLLAQHKILQGELGGRRALLQQALRRGEELAAAGGSVGPGAEPLH 755

Query: 267  PT----------AIWNTITEKSTNITSSNTTYSTHPQYS------LAKLLDFLDIKREDV 310
                          W  + E +              Q+       L  L D   +     
Sbjct: 756  LAGLAERAASARRRWQRLEEAAARRERRLQEARALHQFGADLDGLLDWLRDAYRLAAAGD 815

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----DVALIEAD 365
                  S+    R        +      +         +              V ++EA+
Sbjct: 816  FGHDEASSRRLARQHRALTGEVEAHRGPVGGLRRQLATLGGASGAGPLVVALQVRVVEAE 875

Query: 366  NEREEAISIAIALRMSLDE------------NKKKSALITADRNLARRVKLELTR-FGIN 412
                E   +A   R  L +              +          LA RV   L     + 
Sbjct: 876  QLFAEVTEVAALRRQWLRDALAVYRMFGEVHACELWIGEKEQWLLAMRVPDSLDDVEVVQ 935

Query: 413  IDISAGIPLSTTLHSSILT---SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
                +      +L   +L    ++   +   +         +  L         L   + 
Sbjct: 936  HRFESLDQEMNSLMGRVLDVNQTVQELVEGGHPSSDEVRSCQDHLNSRWNRIVELVEQRK 995

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHI 527
                  L    +  ++ ++++ V ++    ++               +     L      
Sbjct: 996  EEMSAVLLVENHVLEVAEVRAQVREKRRAVESAPRAGGALQWRLSGLEAALQALEPRQAA 1055

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            L     L+  +    +T  +    +                         +   + L + 
Sbjct: 1056 LLEEAALLAERFPAQATRLHQGAEELGAEWGALAGAAQACGEAVAAAGRLQRFLRDLDTF 1115

Query: 588  FSKIIETGSCIKANAIEWID--------IITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
               ++       A               +       E V  + E  + +           
Sbjct: 1116 LDWLVRAQEAAGAVEGPLPRSLEEADGLLARHAALKEEVDQREEDYARIVAASEALLASE 1175

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA--NGTRHL 697
              +      L+E +       +  L    +    L  A  Y        +       + +
Sbjct: 1176 GAELGPGLALDEWLPHLEVGWHKLLGLWEERREALVQAHVYQLFLRDLCQALAVLRNQEV 1235

Query: 698  IYTRSLRENNIPTIASRW-LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
              + +     + ++       R  +         ++   Q      R+ +   +Q     
Sbjct: 1236 ALSGAELPCTVESVEEAMKRHRDFLTTMELNQQKMQVAVQAAESLLRQGNAYGEQAQEAV 1295

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
             +     +           K L       + R   +LD   H K    R       H + 
Sbjct: 1296 ARLLEKSQENQLRAQQWMQKLLDQLVLQHFLRDCHELDGWIHEKMLMARDGTREDSHKLH 1355

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQ 875
               ++ +        N    + I+   ++     P +    R    +I   + E E   Q
Sbjct: 1356 KRWLRHQAFMAELAQNKEWLEKIEREGQQLMQEKPELAASVRKKLGEIRQCWAELESTTQ 1415

Query: 876  SSIEKIF 882
            +   ++F
Sbjct: 1416 AKARQLF 1422


>gi|149918445|ref|ZP_01906935.1| hypothetical protein PPSIR1_35932 [Plesiocystis pacifica SIR-1]
 gi|149820745|gb|EDM80155.1| hypothetical protein PPSIR1_35932 [Plesiocystis pacifica SIR-1]
          Length = 4680

 Score = 41.8 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 72/701 (10%), Positives = 172/701 (24%), Gaps = 29/701 (4%)

Query: 93  LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL 152
           +       P +S   R   L RL       L  + + L   +   +  +    + +   L
Sbjct: 253 VAADGESAPSLSWFDRANRLIRLARWTGISLVSLERALRTCAGNRIDAAGLRRLAVIVEL 312

Query: 153 ADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211
            D +D  I+        +  L             D           +L E   +SP    
Sbjct: 313 RDALDIDIDLACALLAPVDTLGIGDGLE-LSSLRDPFNRVFNGRHAQLAERYVASPG--- 368

Query: 212 IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
                    ++ +      +++ S   +    +                           
Sbjct: 369 --------GYVAEPLADFEVLSASGDLLSLDNKAYRLHLRRALSLSEAAVTTIVERFRAH 420

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
               + ST++ +S         + +A L + LD+   ++  + ++             + 
Sbjct: 421 AQARDASTSLATSPDAQGLSLLFRVATLANALDLDVSELLDILDILELDPSARSSDVYAL 480

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSAL 391
           L P  +    +    +    ++    D A+       +  ++IA  LR +         L
Sbjct: 481 LIPGDASAPTSTAGFDAHGALEAGADDAAIETRAWLVQAIVAIARWLRAAQLSTATLRVL 540

Query: 392 I---TADRNLARRVKLELTRFGINIDISA--GIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
               T D     ++++ L     +    A     L+  L       + + + +    +  
Sbjct: 541 TLGPTRDEAAEEQLRVLLDGLQHSFSEQAASAQTLARVLDPRTARLVFDGVSEPERGLTW 600

Query: 447 ---ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
                L+           K    A +        G      +       L          
Sbjct: 601 PGRPELLTVEAQGVRAATKAALDALDERSPEDFLGLGVGARVAAQVHAHLVHRGLLTPTG 660

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
            +       + ED  L+    +        +        +  G         L  + L  
Sbjct: 661 ALAESTLSEAAEDFRLSTDFDEQRGPLFELIAALFQEAYAAQGVPKAEVELSLYPSDLGA 720

Query: 564 VCLDEHRKLPNLWFEE-----EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
           + L     +      +     +   L    + +++ GS  +A     ++     +     
Sbjct: 721 LALSSEAVVELHANLQFNGLVDADELVRDAAALVDAGSLSEAAVNSPLERHAAQVHAYLR 780

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
               +  +    +       L         L E +          +     +   +   +
Sbjct: 781 AAVEDFQAAPLSVDEAMWPALPLSAEEKTQLVENLRFNGHIDAHGVVVDKLALAAMAIED 840

Query: 679 KYIGQAAHDFEMA-NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
             +    +    A  G          R+  + T  S  L+ L      +      + G+ 
Sbjct: 841 FDLAVQFYPHRRAILGALQAAIEGLRRQFLVFTADS--LEPLGDAIAAEEAYAQVEAGEA 898

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
             D         +    +         A     S + + +L
Sbjct: 899 GEDAPSTFLLADELVRARARVVSIEEAAARYRLSPASLAEL 939


>gi|71901488|ref|ZP_00683575.1| phage-related protein [Xylella fastidiosa Ann-1]
 gi|71728744|gb|EAO30888.1| phage-related protein [Xylella fastidiosa Ann-1]
          Length = 426

 Score = 41.8 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 71/234 (30%), Gaps = 28/234 (11%)

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             S S   + ++ P +V   R  K              D GT+ H +              
Sbjct: 7    LSPSSAHRWLHCPASVPLTRTCK-------DDSSPFADEGTVAHTV-------------- 45

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
                 ++   D+              W  +  +++    E+ + +++      V  P ++
Sbjct: 46   -AADALRTGSDASAYVGACHEVNGHRW-EVTAEMAAYVQEYVDDVRAIAGVRLVEQPLRI 103

Query: 890  AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949
            A  +      G AD + +L    + I D K G     +   +  + QL L A A     F
Sbjct: 104  ASITGEQGAKGTAD-VVILAGDELVIVDLKYGK--GVKVLAEGNE-QLQLYALAALQ-EF 158

Query: 950  SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
            + ++  +   L  ++ +     + +    +         +        +    N
Sbjct: 159  AGVEAFQHVRLVIVQPRLGHADEWVRTLPQMEDFRRKVAQGAARCRAAMWHYTN 212


>gi|302846421|ref|XP_002954747.1| hypothetical protein VOLCADRAFT_95633 [Volvox carteri f. nagariensis]
 gi|300259930|gb|EFJ44153.1| hypothetical protein VOLCADRAFT_95633 [Volvox carteri f. nagariensis]
          Length = 2741

 Score = 41.8 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 61/500 (12%), Positives = 132/500 (26%), Gaps = 16/500 (3%)

Query: 393  TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
                  A      L       D+ + +PL+    +  L + L+ +       A ++ +  
Sbjct: 624  LPHNAAAFACLAGLGLHPAFKDVQSKLPLANRALAQRLAATLSQLAHWCPVFAESSFL-P 682

Query: 453  PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512
             L          + A +    VA  G +       L     + +AT  +   +  W    
Sbjct: 683  DLIFPFVKLFASASALHRGSPVAAAGARRPRSSAALDERCFETVATLLSCGWMRGWVDLK 742

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD--WTKLTVTCLQNVCLDEHR 570
               + E                    +   S    LS+ D        T    +      
Sbjct: 743  LGCELERVSQRCPGFRDFKAVRRERASRTRSYQDLLSLHDAPLAAHFNTYRGGMAGVVWP 802

Query: 571  KLPNLWFEEEGK-TLSSLFSKIIETGSCIKANAIE--WIDIITRLIDGETVK------PK 621
             L  LW E   +     L+   I  G  +    +   +I +  +++  +T          
Sbjct: 803  HLATLWTELLTRSDWLRLWDHCITAGPDLLYMFVCAYFISLRVQIMAMDTDHKLANWLAG 862

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                    IL             +    NE                    + L  A++  
Sbjct: 863  PPTIDMGEILKVAYLLRDRTPEQLRPVPNEWQPLPQGPTYVEFKDFPAGAVELFAADRAR 922

Query: 682  GQAAHDFEMANGTRHLIY-TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
             + A D  M           R+          S   Q+L  L         +   +   +
Sbjct: 923  IKEAEDAIMRRRAVVSELELRTRAVALQAASLSSERQQLAALEEQRRAMLRQLEAETASE 982

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
              R  D   ++   +        +A       +  ++L      +  +R L    +   +
Sbjct: 983  MARLDDRAKEEKLRQIAAMEKAYQANLLEVRATWQRELEFARAEMAHKRALAAQQVRSRQ 1042

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
            +  D   +   FH        +   + T   + +  +++    E E       +    + 
Sbjct: 1043 E--DEQIKALEFHAQQRMREMEDDVRRTAVASAVRDELLSQQMEAEA-KQRAKLKEWEIE 1099

Query: 861  HKISHSFLEHEEKIQSSIEK 880
             +     L+HE++ ++ +  
Sbjct: 1100 DESRKQRLQHEQERRAQLAV 1119


>gi|153006144|ref|YP_001380469.1| hypothetical protein Anae109_3296 [Anaeromyxobacter sp. Fw109-5]
 gi|152029717|gb|ABS27485.1| conserved hypothetical protein [Anaeromyxobacter sp. Fw109-5]
          Length = 1925

 Score = 41.8 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 74/697 (10%), Positives = 167/697 (23%), Gaps = 36/697 (5%)

Query: 215  MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH-IPTAIWNT 273
            +   +  L      P + A    S   T  ++   ++     ++    +      A  + 
Sbjct: 378  VELPSGELPSAQAKPALAAPQDLSEHVTIPVVEERSDAAEQVVLRGDPEPLPASEAGPHG 437

Query: 274  ITEKSTNITSSNTTYSTHPQYS--LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                             H +     A         R +     N       R    +   
Sbjct: 438  SAAAYRAPPPPAPELPGHLRSYSEFAASSWISPAGRCERVPWRNADFADKLREEAGAAMV 497

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVA----LIEADNEREEAIS--IAIALRMSLDEN 385
                         L       +     V     L+ A N          + +LR  L E 
Sbjct: 498  PLRLPELAIFARALGELGAAPKSSAPAVRALAELLSAPNSPTSGSYPDRSSSLREVLPEG 557

Query: 386  K--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443
               ++  L       +R   + L R    +D +A    +       L  L +        
Sbjct: 558  GPWRRIELFLEAVRPSRETPITLERARELVDAAAFRDSALRNAILALFKLGSMGLDPVPR 617

Query: 444  MAIATLVKHPLAKFGFPEKYLSRAKNALELVAL--------RGNKNSYDIMDLKSLVLDR 495
            M  A       A          RA+   E+VA                            
Sbjct: 618  MQAALASDAAAAAHSPARLDELRAQFHREVVAHWNAAGAKLPRKHCRDAWTRFIEQAEPT 677

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            +      +          E  + +  L+  H          +            I+D   
Sbjct: 678  LRALFPVSKGGRALWDPLEMRRSIGALVRMHEEIADAAGARFDDRNKMDRAARRIADLAM 737

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                  +++    H    +    E  + L++   +  +   C  A              G
Sbjct: 738  GVNEAAESLQQHGHGNGHDAIPVEALRKLTAQPLETSDEELCRLALVALMRGEPIEAAPG 797

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
             +++  + +   L  +  +     +    ++ GL+E   P   A          +   + 
Sbjct: 798  LSLRLLLGRPDLLSAVDGITIEQGSPLDAVVAGLDEVSDPVRAAAILLSPPEPTTAEGMA 857

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT-----DFFDN 730
             A + +   A        +R  + +R           +  L   + L        + +  
Sbjct: 858  PARQLLRLLAVP------SRRWLMSRLGSNTGAIVPKTARLDDEVALFEEIDALKNSWSV 911

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
            L +      +  R +    +    +  + F P+  +       E           Y R  
Sbjct: 912  LDELASRSREQVRGVLQEVQGLAAQPAREFDPVLCRAWLREVREFADHSKTELLEYLRAR 971

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIIT---ELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
             + +     ++       G   H ++    E   +   + T        +  +       
Sbjct: 972  ARAEQKAPVEQALAEGRLGDAMHLLLEGSREATTELALRETAWRKEARSRYANPLAAISA 1031

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             P  +   WR     +    +  + ++++   +  V 
Sbjct: 1032 EPGELFETWRRGVTGVV---VGPDRQLRTKFVEQVVE 1065


>gi|116623517|ref|YP_825673.1| condensin subunit Smc [Candidatus Solibacter usitatus Ellin6076]
 gi|116226679|gb|ABJ85388.1| condensin subunit Smc [Candidatus Solibacter usitatus Ellin6076]
          Length = 1210

 Score = 41.8 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 64/662 (9%), Positives = 158/662 (23%), Gaps = 46/662 (6%)

Query: 55   RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELAR 114
            RAI+  R   + + G+ ST+   +  + + +          +       + I+R L+ AR
Sbjct: 395  RAIEAGRQVILRLLGEASTLKNQLAQIDEYLAGIDRETARATREEQVAAAEIER-LDGAR 453

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174
              L        +  +              +   LA  L   ID ++TE            
Sbjct: 454  KQLSETVAQRQMELESVTGERKRTEEELVDRRRLAGELRREIDGLKTE-VSQIRARKESL 512

Query: 175  EKYGMWWLLAADFLKIASKYWT----ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
            E+         + +K           + L  +   +      A     AE  +      +
Sbjct: 513  EQVLAHRTYTTESVKRLFASLEKGKADDLKPMGVLADYVEVDAQFEKPAEEFLHEELEYV 572

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
            ++        A   L    A     A  L   + +               +        T
Sbjct: 573  VV---ENWQQAERGLDFIRAELDGRATFLVHPEPN---------GHPRAPMPEPAIGPET 620

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
                 L++ L   +  ++    L    ++ +      +   L      +           
Sbjct: 621  GISARLSESLRLTNGFKDRAVDLMPRVSQCFLAEDRAAAQRLAVSYPHLYFLLPDGVCYH 680

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
                     +       + EA  +A+ L+       +  A I          + EL R  
Sbjct: 681  GHTVTGGKKSGAGPLAMKREARELAVQLKSRQGTLDEMLARIDGLNQEIIGFEAELERL- 739

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
                      L  +     +          +D   + + +     +     +   R+ + 
Sbjct: 740  --------RALQQSREKDRVALDHEMRKLGDDLARVNSRLSVARLELERLRRDAERSADQ 791

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
             E                +  +  +    +         +    + +     L +     
Sbjct: 792  RERNRAAVADKEQLRAQSEEALEAQRQEMEKLEGQAATIAEEHAQTRAELAGLEERHRGE 851

Query: 531  ITPLVTYKTNKNSTCGNLS--ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
             + +   +     T    +    + ++L     + +  +            +   L +  
Sbjct: 852  RSAMGRLEQQFRETSNRRNAIAPEISRLGEQRSRLLADNIELDQRAAELAAQITALDTQV 911

Query: 589  SKIIETGSCIKANAIEWIDI---ITRLIDGETVKPKIEKSSTLFI--------------L 631
            +++    + ++       +    +         +    +   +                L
Sbjct: 912  NEMATQDAGMREALRAGEEELKGLRTAAQETQERRTQIEIDLVRKQAELKYLDETSRKEL 971

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
            G     L   D  +  G       +   +       + +       E    Q  HDF  A
Sbjct: 972  GCPVEELGARDETVPDGEAIAEAEQAANEVRARIEGLGAVNAAAMEEYQEAQQRHDFLSA 1031

Query: 692  NG 693
              
Sbjct: 1032 QR 1033


>gi|116282900|gb|ABJ97437.1| MerA [Streptomyces violaceusniger]
          Length = 5721

 Score = 41.8 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 74/766 (9%), Positives = 161/766 (21%), Gaps = 49/766 (6%)

Query: 109  LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
            L  LA L +         +        L          WL  + A+        +  W  
Sbjct: 1891 LTSLAELHVRGVRIDWGPLFAGVSPVELPTYAFQRERFWLGADTAESAVDTWRYQISWNR 1950

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWT----ERLVELNASSPV-------GYQIALMRA 217
            L  L        W      +      WT      L E   +S           +  L   
Sbjct: 1951 LPDLDTPDLSGTW---LAVVPEGDDEWTMAGARALAEPGRASVRTLQVPCDTDRRTLTGL 2007

Query: 218  EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277
              +         ++   +            +        ++       +   +W      
Sbjct: 2008 LMDVAGSDDIAGVVSFLAADERAHPTHPALSRGMAHTVELLCALTTADVEAPLWCVTRAA 2067

Query: 278  STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK----RLGNVSNEMYGRSMVISKSFLP 333
               + +         Q ++        ++R +       L    +    R  V   +   
Sbjct: 2068 VMALPTDPAPSPA--QAAVWGFGRVAGLERSERWGGLIDLPVHCDAQVLRRFVAVLAQAT 2125

Query: 334  PDTSDMRNTDI-------LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
             +                   +            ++           +A  L  S  E+ 
Sbjct: 2126 GEDQVAVRPLAVLGRRLEPAPRTGPADAWRPHGTVLITGGTGALGAHVARWLAQSGAEHL 2185

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
                        A  ++ ELT  G+ + ++A         + +L S+           A+
Sbjct: 2186 VLLGRRGQKAPGAAALEDELTALGVRVTMTACDVTDRAALAGVLASVPEL-------TAV 2238

Query: 447  ATLVKHPLAKFGFP-EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              L            +     A    ++          D   L++ VL   A        
Sbjct: 2239 VHLAGTVRFGGSLDADLDEYAAVFDAKVTGALHLDELLDHASLEAFVLFSSAAAVWGGVG 2298

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                +  +     +A       L   +          +      +S      +     V 
Sbjct: 2299 QAGYAAANALLDAVAQRRRARGLPTTSIGWGTWGGSLAPEDEQRLSRIGLRPMRPEVAVT 2358

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
               H                  F      G            +       +T+    E+S
Sbjct: 2359 ALRHVVGSAEPCPAIADIDWETFGPAFTAGRPSPL----LSALPRLRNSSDTMAMAGERS 2414

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
                 L  + +   +   + L   +      +         V    L   +      +  
Sbjct: 2415 GLRRRLAEVSTADQDRTLVDLVREHAAELLGHHGPAAIDPTVPFRRLGFDSLTAVELRTR 2474

Query: 686  HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
             +          +       ++    A   L R  +LGG      +    +         
Sbjct: 2475 LNAATGLRLPATLLF-----DHPSCRAVADLLRSELLGGRSGPLAVPSATEAAPVGAVAS 2529

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
            D            P      +      SE +++++D        +  L      +     
Sbjct: 2530 DEPIAIVAMSCRFPGGIESPEDLWRVVSEGREVLSDFPDDRGWDVEALYDPDPDRPRTSY 2589

Query: 806  TDRGTLFHNIITELIKKRINKNTPEIN-----HLMKQIIDSHFEKE 846
               G   H+      +         +       L+ +      E+ 
Sbjct: 2590 VRTGAFLHDAAEFDPELFGISPREALAMDPQQRLLLESAWQVLERA 2635


>gi|109461491|ref|XP_001072073.1| PREDICTED: spectrin, beta, non-erythrocytic 4 [Rattus norvegicus]
          Length = 2605

 Score = 41.8 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 84/787 (10%), Positives = 187/787 (23%), Gaps = 66/787 (8%)

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW---TERLVELNASSPV 208
            L+++ +       + E   +L        W L  +  +  ++ W    ERL+E  + S  
Sbjct: 675  LSELQEQAARRRAELEASRSL--------WALLQELEE--AESWARDKERLLEATSGSGG 724

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA--TARLMSTVANHPNGAIVLPGLDCHI 266
                A    +     +      I+ G  G   A     L         G  V PG +   
Sbjct: 725  AAGTAGGAHDLSSTARLLAQHKILQGELGGRRALLQQALRRGEELAAAGGSVGPGAEPLH 784

Query: 267  PT----------AIWNTITEKSTNITSSNTTYSTHPQYS------LAKLLDFLDIKREDV 310
                          W  + E +              Q+       L  L D   +     
Sbjct: 785  LAGLAERAASARRRWQRLEEAAARRERRLQEARALHQFGADLDGLLDWLRDAYRLAAAGD 844

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----DVALIEAD 365
                  S+    R        +      +         +              V ++EA+
Sbjct: 845  FGHDEASSRRLARQHRALTGEVEAHRGPVGGLRRQLATLGGASGAGPLVVALQVRVVEAE 904

Query: 366  NEREEAISIAIALRMSLDE------------NKKKSALITADRNLARRVKLELTR-FGIN 412
                E   +A   R  L +              +          LA RV   L     + 
Sbjct: 905  QLFAEVTEVAALRRQWLRDALAVYRMFGEVHACELWIGEKEQWLLAMRVPDSLDDVEVVQ 964

Query: 413  IDISAGIPLSTTLHSSILT---SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
                +      +L   +L    ++   +   +         +  L         L   + 
Sbjct: 965  HRFESLDQEMNSLMGRVLDVNQTVQELVEGGHPSSDEVRSCQDHLNSRWNRIVELVEQRK 1024

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHI 527
                  L    +  ++ ++++ V ++    ++               +     L      
Sbjct: 1025 EEMSAVLLVENHVLEVAEVRAQVREKRRAVESAPRAGGALQWRLSGLEAALQALEPRQAA 1084

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            L     L+  +    +T  +    +                         +   + L + 
Sbjct: 1085 LLEEAALLAERFPAQATRLHQGAEELGAEWGALAGAAQACGEAVAAAGRLQRFLRDLDTF 1144

Query: 588  FSKIIETGSCIKANAIEWID--------IITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
               ++       A               +       E V  + E  + +           
Sbjct: 1145 LDWLVRAQEAAGAVEGPLPRSLEEADGLLARHAALKEEVDQREEDYARIVAASEALLASD 1204

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA--NGTRHL 697
              +      L+E +       +  L    +    L  A  Y        +       + +
Sbjct: 1205 GAELGPGLALDEWLPHLEVGWHKLLGLWEERREALVQAHVYQLFLRDLCQALAVLRNQEV 1264

Query: 698  IYTRSLRENNIPTIASRW-LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
              + +     + ++       R  +         ++   Q      R+ +   +Q     
Sbjct: 1265 ALSGAELPCTVESVEEAMKRHRDFLTTMELNQQKMQVAVQAAEGLLRQGNAYGEQAQEAV 1324

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
             +     +           K L       + R   +LD   H K    R       H + 
Sbjct: 1325 ARLLEKSQENQLRAQQWMQKLLDQLVLQHFLRDCHELDGWIHEKMLMARDGTREDSHKLH 1384

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQ 875
               ++ +        N    + I+   ++     P +    R    +I   + E E   Q
Sbjct: 1385 KRWLRHQAFMAELAQNKEWLEKIEREGQQLMQEKPELAASVRKKLGEIRQCWAELESTTQ 1444

Query: 876  SSIEKIF 882
            +   ++F
Sbjct: 1445 AKARQLF 1451


>gi|296131070|ref|YP_003638320.1| RecB family nuclease, putative [Cellulomonas flavigena DSM 20109]
 gi|296022885|gb|ADG76121.1| RecB family nuclease, putative [Cellulomonas flavigena DSM 20109]
          Length = 1228

 Score = 41.8 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 37/407 (9%), Positives = 87/407 (21%), Gaps = 25/407 (6%)

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL-AVLLVDHILQCITPLV 535
                   +  L + +    A + +   V    + L +E ++     LV+          
Sbjct: 19  AARCEHAVLRALDARLGRGPAAEPDADVVLARVAHLGDEHEQRVLRGLVERYGVWRPGTR 78

Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                  +T    S +         L  +   +       +          L        
Sbjct: 79  GGLAQVPATRDPASRAHLEAAHAATLDRLGSADVVHQAAFFDGRFVGRADFLVRDDDGAW 138

Query: 596 SCIKA----NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
           S   A    NA     +       +  +  +  +  + ++    +   +    ++    E
Sbjct: 139 SVRDAKLARNAQPTALLQVAAYADQLARAGVPVAREVQLVLGDAAVTRHAVADLVPVYRE 198

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
                    +   ++         T     G+ +         R +     + E     +
Sbjct: 199 RRARLQELLDAHRAQDGPVTWG-DTRWAACGRCSLCTAELEARRDVTLVAGVYERQRALL 257

Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            +  +  +  L        ++      L   R       +   +   P  P++       
Sbjct: 258 GAAGVATIDELAALPDDREVEGLSPDVLARVRLQARLQLEQEARNADPAHPVDVPWALTH 317

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831
              +  L+  P       I             D    G      +  L     N   PE 
Sbjct: 318 PPRVAALLPPPDP---GDIFFDFEGDPLWY--DAAMAGEPDAWGLEYLFGVVENPPAPEA 372

Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
                                    R         FL +    ++  
Sbjct: 373 EA--------------PFVAFWAHDRAEERVALREFLAYLADRRARF 405


>gi|294631279|ref|ZP_06709839.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
 gi|292834612|gb|EFF92961.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
          Length = 147

 Score = 41.8 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 8/92 (8%)

Query: 919  KTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCI 974
            KTG   P      +   PQL++   A++ G+  +       +      ++L+Q       
Sbjct: 28   KTGKQAPTGAEVARH--PQLAVYQLAVREGAVDEAFDGVRPEPGGAELVQLRQGAAKRDG 85

Query: 975  TNDKKKYSADELSEKSL--KNLIEIVTLLQNG 1004
                 K  A E  E       L      + + 
Sbjct: 86   GEALPKVQAQEPLEGEWVGDLLATAAGKVLDE 117


>gi|326315434|ref|YP_004233106.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372270|gb|ADX44539.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 665

 Score = 41.8 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 52/644 (8%), Positives = 157/644 (24%), Gaps = 55/644 (8%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V +   +   +  L           +     I ++  +      A  L    L      
Sbjct: 60  RVLMLAYSDAGLAALHDRLGRYMPADA-REVRIMTVEQLCAGLLQAQGLPVNTLA---EP 115

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPE--SPLSLPISPANAIWLAKNLADIIDIIETEE 163
           ++R L + +       +L         +  +      +  +   LAK    +   I  E 
Sbjct: 116 LERQLLIRQAHAALLQELRHEAPPEAADFLARELDVQAFTDFEALAKQ-RLLHRDIAREG 174

Query: 164 KKWEDL-HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-EAEH 221
                       +      L   + L+       +     + +  +  Q+  +   +   
Sbjct: 175 IHAAAYCRDHALDYGLYLLLGRYERLRRGPDDEPQFYAPGDCTYEIARQLGELDFGDPCP 234

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
            ++G    ++         A   ++  +    NG              ++    + + +I
Sbjct: 235 WLQGRYDAVLFDELQDLDEAAMLVLRHLVASGNG--------------VFVGAGDFNQHI 280

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS-KSFLPPDTSDMR 340
                +   +    + + L                     G + +   +      T   R
Sbjct: 281 LPGAFSVFGNGLQRIRQELPEPPEVLTLNTTYRFGKAICEGLNPLFGVEFETHYPTKTAR 340

Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLAR 400
              +  +   +  +    +           A   A  L            ++      + 
Sbjct: 341 FERLAYDSDEDCARQLLAIHQFVQRTPP-PASGAAPCL-----------TVVLRSPEDSV 388

Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
            ++      GI+               +++ +L  A+      + +   +          
Sbjct: 389 LLEWRFAHEGIHYACKGLKRFYQRPEIALVLALFRALPGCGGQVRLTQGILS-------- 440

Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                 A + L     RG++   D++      L  +A            +       +  
Sbjct: 441 -----SALDGLMRYVRRGSRPDADVLANGLFDLQALAQHSTAEVDTRAVASELIHQPDRM 495

Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
              +          V     +        +                     +      + 
Sbjct: 496 RDFLLRASFDPNAPVASAACEAWLALPAEVCADAGRLCNHPLLRRFFAEAPISPQEHRQC 555

Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
             +L +L             +  E++  +  +++    + +  ++ +L +L     +   
Sbjct: 556 LDSLQALSRICAG------LSVDEFLGQLALMVESGIRQHRQNEAPSLQLLTVERCKGHE 609

Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
           ++ + +  +  G +P+  A N          + L  A +++   
Sbjct: 610 YEYVAVPLVERGRFPRAAALNEAYRERNMLYVALTRASRHLWLL 653


>gi|262194124|ref|YP_003265333.1| hypothetical protein Hoch_0825 [Haliangium ochraceum DSM 14365]
 gi|262077471|gb|ACY13440.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
          Length = 387

 Score = 41.8 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 16/182 (8%)

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--I 824
               S+S + +    P +     I       H     +    GT  H  +   +++    
Sbjct: 1   MPRLSYSRLSRYEACPLSYRLHYID-----QHVADRGEPVRFGTAVHAALEHAVREHLAA 55

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPP-HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
            +  P  +  +  +  + + +  L    +      L H+        E+ +   ++ + V
Sbjct: 56  ERCGPLSHERVAVLWQNAWTESGLSGLSLFREGLALLHRFVR-----EQGVVDHLDVLAV 110

Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
               ++ +   G  + G+ DR+D +    VD+ DYKT               Q+SL   A
Sbjct: 111 EQEFRITV--GGFEVLGYLDRVDRVDDETVDVVDYKTNRQLFTRDELDG-SLQMSLYQLA 167

Query: 944 LK 945
            +
Sbjct: 168 AQ 169


>gi|163742076|ref|ZP_02149465.1| ATP-dependent DNA helicase RecQ [Phaeobacter gallaeciensis 2.10]
 gi|161384797|gb|EDQ09177.1| ATP-dependent DNA helicase RecQ [Phaeobacter gallaeciensis 2.10]
          Length = 699

 Score = 41.8 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 46/561 (8%), Positives = 131/561 (23%), Gaps = 57/561 (10%)

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            +   +    +         + + +   + +    +    +A    D+ R +       L
Sbjct: 186 PLAAFTATADQETREEIVEKLFDGEAPRSFLRGFDRPNIHLAFATKDSPRRQ------IL 239

Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             +     +   +    R     +   L   G       G   +              + 
Sbjct: 240 EFAAARKGQSGIVYCGTRAKTEALAAGLREAGHAACYYHGGMDAEDRRG---------VE 290

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                     +V       G  +  +    +A                DL   +      
Sbjct: 291 TRFAREDGLIVVATVAFGMGIDKPDIRWVAHA----------------DLPKSIESYYQE 334

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK-LT 557
                        L+    E   L    I + + P      +       L +++  K   
Sbjct: 335 IGRGGRDGAPAETLTLFGPEDIRLRRSQIDEGLAPADRRSADHARLNALLGLAEALKCRR 394

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG-E 616
            T L                ++         +      + ++ N       +  ++ G  
Sbjct: 395 QTLLAYFGETAEPCGNCDLCDQPVDVFDGTTAVRKALSAILRTNETYGSGHLIDILVGNT 454

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
           T + + ++   L +    +         +   +      +   +     R+ ++ L +  
Sbjct: 455 TDRVRDKRHDDLSVFACGKEYGKRQWQAVFRQMMGHDLVRPDPERHGALRMTEAALPVLR 514

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
            E+ I         A  +  +    S  +               +L             Q
Sbjct: 515 GEQDIALRRDTISSAKRSPAVKALVSDEDA-------------PLLSALKAKRRALAEAQ 561

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
               +    D T      +  +  P    Q         K+L        +    + + +
Sbjct: 562 KVPAYVIFPDRT----LIEMAETRPSSLDQMARIGGVGAKKLERYGRDFLSVITGESEAL 617

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-----INHLMKQIIDSHFEKENLPPH 851
              ++     D G+L+  ++    +     +  +         + ++     + E     
Sbjct: 618 HPMRRKLAGRDAGSLYDALMETQTRLARGDDGTDKPLSCSAAQLAKLAQMRPQDEM--AI 675

Query: 852 IDIIWRHLFHKISHSFLEHEE 872
             ++      + + +FL+   
Sbjct: 676 TRLLGERRAERFAAAFLDVLR 696


>gi|302831303|ref|XP_002947217.1| hypothetical protein VOLCADRAFT_87353 [Volvox carteri f. nagariensis]
 gi|300267624|gb|EFJ51807.1| hypothetical protein VOLCADRAFT_87353 [Volvox carteri f. nagariensis]
          Length = 3358

 Score = 41.8 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 55/623 (8%), Positives = 158/623 (25%), Gaps = 25/623 (4%)

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
             N ++E S  +  +  ++    Q  + +LL    +    + +L    N +   +   +  
Sbjct: 1318 RNCLSEWSLLVQEARRSWQLSEQVYMRRLLHNWHLVACSLAKLSAAYNTIQQAACNYALK 1377

Query: 331  FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA 390
             L P   D+    +  ++   +++           +   EA   ++  R      +    
Sbjct: 1378 ILRPLLRDVFYCWLDWHEGRMLRR-----------SRETEARH-SMNARKQRLVMRAWYG 1425

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
             + A R L    +  +      + +SA   L     ++   +      +     A    +
Sbjct: 1426 NVVASRKLKAACQSIMRNEVKRVMVSALRQLRREHDNARRAAEGRRAVERG---AARRCL 1482

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
            +H  A     +         L+LV  +  +       L + +        +   V   + 
Sbjct: 1483 RHWKALGQARQAQDEWRAQRLQLVTAQRTRRVMTAWQLVACLHAEHERLVHICTVRIHRR 1542

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNST--CGNLSISDWTKLTVTCLQNVCLDE 568
            R +   +     ++  + + +  L      +         + S+    +        +  
Sbjct: 1543 RAATIIQAWRGRVLGSVTKRMKMLAALLAWERGLKTRAWRAWSNLLAASRASASRFAMAA 1602

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                        G  L    +     G  ++   +  + ++  ++       ++ K   +
Sbjct: 1603 RHHRTRRLGLCFGVLLKLWRAYRERLGRALRFRDVHALGLLAEVLAAWRELVEVLKWKNI 1662

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +               L G       +  +K+     V+      + A     +A    
Sbjct: 1663 RMRRAETHGRHRLLAGSLYGWYYVARHRLASKHAVAVAVLHWVRRRRAAALAWWRAWAAT 1722

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW----TRK 744
              A   R   Y R         +  R    ++           + R    L       R 
Sbjct: 1723 HRAMRLRGEGYARVRATRTKAWVLVRLRANVIQNARIAGAIAHRNRYMARLALSGWLLRT 1782

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
            L                  +    + +  +   L         R  +    +   +   D
Sbjct: 1783 LLAGEWVSRLWVIAEQLSWQLLADSLAAWQEFILHRRRKHGMIRTAMHYWRLGRQRNAWD 1842

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
                   +H    ++++  + +        + +                 + +    +++
Sbjct: 1843 SLR----WHATNRQIMRAAMARGRQGAASRVLRAWREEAHYRRGLRDRFALIQARSRRMA 1898

Query: 865  HSFLEHEEKIQSSIEKIFVNIPA 887
                    +I  ++         
Sbjct: 1899 LRHGMDRWRIFLALRVFRREQHF 1921


>gi|222480116|ref|YP_002566353.1| DNA replication factor Dna2 [Halorubrum lacusprofundi ATCC 49239]
 gi|222453018|gb|ACM57283.1| DNA replication factor Dna2 [Halorubrum lacusprofundi ATCC 49239]
          Length = 901

 Score = 41.8 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 60/229 (26%), Gaps = 32/229 (13%)

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                 + G   L    + D    +  Y        +         + I+  +  P   Y
Sbjct: 53  ETAEHAEPGMELLVTDAEEDEFGGETGYATTGDSWVVLEPDFLVDVTGIRSWVQCPRMYY 112

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
             ++  +              +GT+ H +  +L++    +    +   +++         
Sbjct: 113 LNKLSGI----PLNY---PVVKGTVVHEVFGDLLRGM--ELEDSVVDRVEEAGLE-LGLL 162

Query: 847 NLPPHIDIIWRHLFHKISHSF-----LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901
              P                +     L  E+  +S    I           S    L G 
Sbjct: 163 GYEPEEVADEVRRNAAAIEGWLSQGTLTDEDTWRSEFTLI-----------SPTFGLKGR 211

Query: 902 ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950
           AD +   + G     + KTG N  K   +     Q +  A  L+     
Sbjct: 212 ADAL---RRGTP--VELKTGKN-TKREPRFHDKIQAACYALMLEERGVD 254


>gi|262193492|ref|YP_003264701.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
 gi|262076839|gb|ACY12808.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
          Length = 1161

 Score = 41.8 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 60/578 (10%), Positives = 136/578 (23%), Gaps = 42/578 (7%)

Query: 45   ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PP 102
            A+      T RA  ELR     +       +  + +   +       + + +        
Sbjct: 544  AACLAITFTNRAAGELRERLDALLPGAGAGV-AVHTFHSLALRILRENRVRAGLHRGFRV 602

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL-------AKNLADI 155
             +  + +  LA  +     K   ++  L   S  +   + A            A++L D 
Sbjct: 603  AAESECVALLADALGCLPAKARSVLARLRRASVAASVAAGAGQGAAEQPPEASAESLDDE 662

Query: 156  IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
            +          + L       +      A   L+           ++  +    ++   +
Sbjct: 663  LARAHR--VYRQALEEAARLDFDELLGRAEALLRE---------DDIGLAYRARFRHLSI 711

Query: 216  RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                E+     +   +IA  +G + A                +    D       +    
Sbjct: 712  D---EYQDIDAQQYRLIALLSGDVGAAGMRDGGQDEAGGSRSLCAIGDPDQAIYGFRGAD 768

Query: 276  EKSTNITSSNTTYSTHPQ----YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                         +   Q    Y     +    ++      L          +   + S 
Sbjct: 769  VGFFLRFREEYPRTREVQLTRNYRSTATIVDAALQAIAPHSLVAERVLEAADAGEGAASL 828

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER--------------EEAISIAIA 377
                 S        E  + +I+      +    D+ R               E  +    
Sbjct: 829  PVHVVSAASARAEAETVVHSIEALIGGTSFFSMDSGRLDDIGVGVGVGAAPGERGAAPTE 888

Query: 378  LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
               S D +    A++      +  +   L R GI     +   L     +  L   +   
Sbjct: 889  NDESDDLSFSDFAVLYRTDAQSGLLCEALARSGIPFQKRSHHRLGDDPLTVALLGEMRDA 948

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                      +     L  F        RA+    + A      +       ++  D   
Sbjct: 949  TAAAAAEDAESPPPGALQAFLDAASIRLRARLETAVAAGPTPDATAAEATTSAVTGDPAL 1008

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                   V      L+    +L     +  L+    L   + ++ S     +        
Sbjct: 1009 DPARIAAVADLLRPLAARCDDLDSFANELALEAEVDLWDARADRVSLLTLHAAKGLEFRV 1068

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
            V  +         +  +   E+ G+     F  +    
Sbjct: 1069 VFLVGCEDGVLPLRWGSGRAEDLGEERRLFFVGMTRAR 1106


>gi|326781202|ref|ZP_08240467.1| amino acid adenylation domain protein [Streptomyces cf. griseus
            XylebKG-1]
 gi|326661535|gb|EGE46381.1| amino acid adenylation domain protein [Streptomyces cf. griseus
            XylebKG-1]
          Length = 2450

 Score = 41.8 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 80/693 (11%), Positives = 159/693 (22%), Gaps = 57/693 (8%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
            A  + F      +LL   L    R     P  +A V                        
Sbjct: 1051 AADAGFLDLGGHSLLAARLAARVREHFAVPFSIADVF------------------RHTTP 1092

Query: 72   STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            + +   +++                    P     QRL  L RL                
Sbjct: 1093 AALAAQVRARSGAAIASAPLSPSPRTGPLPLSPAQQRLWFLHRL-------EGPSPTYNI 1145

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEK--KWEDLHALKNEKYGMWWLLAADFLK 189
            P            A+ LA  LAD+++  ET        D  +  +               
Sbjct: 1146 PLVLSVNGPLDREALQLA--LADLVERHETLRTVYPPTDNGSGADGDGTPHQ-------L 1196

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            I           L+ + P       +R   +   +     ++ +           L    
Sbjct: 1197 ILPPGHESARPVLHLAQPGSDLTEAVRHCFDLATEPPLRTVLFSDGPDHHTLLLLLHHIA 1256

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
             +  +   +   L     TA       +   ++     ++   Q  L    +   +    
Sbjct: 1257 GDGASTTPLARDLATAY-TARLAGREPEFAPLSGQFVDHAARLQLLLGTPAEPTALAEAQ 1315

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            +         +  +  + +    PP  +   +T          +          A     
Sbjct: 1316 LAHWREALAGLPDQLELPADRPRPPVATSAGDTVPFALDATAHEALRRLARAHGATVFMT 1375

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLEL---------TRFGINIDISAGIP 420
                +A  L            L T            L          R   + D + G  
Sbjct: 1376 VQAGLAALLTRHG--CGTDIPLGTPVAGRDDDATAGLVGFFTNTVVLRTDTSGDPAFGEL 1433

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAI---ATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            L     +++     +A+   +   A+    +L +HPL +     + L+     L      
Sbjct: 1434 LDRVRATTLAAYEHDALPFDHLVEALNPPRSLARHPLFQTMLAWQSLADGPVPLGPETTA 1493

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                         L L+              + R    D+  A  L D + +    L   
Sbjct: 1494 RLTAVPSGTAKFDLTLN-AGELPGGGIGGFLEFRTDLFDRSTAQALADRLSRL---LAAA 1549

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                 +  G L +    ++    +    +D  R +P    E           +   +   
Sbjct: 1550 AEQPGTPLGLLPVLGDEEVHRAVVGANGIDGDRPVPLTLAEVYAVAARRHPERTAVSCGG 1609

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +     E       L      +     S     L      +     + L G        +
Sbjct: 1610 VSLTYAELSSRAQSLARLLAARRIGPGSIVALALPRSTDLVAGLLAVSLAGAAYLPMDPD 1669

Query: 658  TAKNPF--LSRVMQSDLNLKTAEKYIGQAAHDF 688
               +    +    +    +  A       AH+ 
Sbjct: 1670 YPADRLAYMLDDARPAALITDAATAERLPAHEL 1702


>gi|119715752|ref|YP_922717.1| UvrD/REP helicase [Nocardioides sp. JS614]
 gi|119536413|gb|ABL81030.1| ATP-dependent DNA helicase, Rep family [Nocardioides sp. JS614]
          Length = 688

 Score = 41.8 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 29/280 (10%), Positives = 72/280 (25%), Gaps = 20/280 (7%)

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
           P         ++    LR       + ++  L      ++     +              
Sbjct: 325 PRPDEVAEAESVAAQVLRLRDAGRSLGEVAVLFRINAQSEAFEEALAARGLPYVVRGAAR 384

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
                +            ++ + +        DW  +    L  +              +
Sbjct: 385 FFDRPEVREAVTRLRGAARSGEAARAAESGDGDWVDVVRAILAGMGWSPEAPTTRGQTRD 444

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEW-IDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
             ++  +L  +  +  +    +     +D     +D    +     +  + +     ++ 
Sbjct: 445 RWESWQALVDQAAQFAAESARDGEAADLDAFVDHLDRRAAEQHAPVADGVTLATFHAAKG 504

Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HL 697
           L +D++ L GL +G  P   A                T      +    +      R  L
Sbjct: 505 LEWDSVFLCGLQDGTLPITYAD---------------TPAAVEEERRLLYVGITRARVDL 549

Query: 698 IYTRSLRENNIPTI---ASRWLQRLLVLGGTDFFDNLKKR 734
             + +L  N         SR+L+ LL        +  + R
Sbjct: 550 TLSWALSRNPGGRASRKPSRFLEPLLPDDARATRERPRGR 589


>gi|121594696|ref|YP_986592.1| UvrD/REP helicase [Acidovorax sp. JS42]
 gi|120606776|gb|ABM42516.1| UvrD/REP helicase [Acidovorax sp. JS42]
          Length = 1101

 Score = 41.8 bits (96), Expect = 0.70,   Method: Composition-based stats.
 Identities = 62/817 (7%), Positives = 166/817 (20%), Gaps = 111/817 (13%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPII 231
                 A   +     + +   E         +   +            +  +      ++
Sbjct: 342  HQQRMARLARALIAQFAQLKRERGWVDMNDVERTALVMLSDPILSGWVQERLDARVRHLL 401

Query: 232  IAGSTGSIPATARLMSTVANHPNGAI-------VLPGLDCHIPTAIWNTITE--KSTNIT 282
            +     + P   + +        GA        V    D       +             
Sbjct: 402  VDEFQDTNPLQWQALHAWLAGYAGAGGGQQPPSVFIVGDPKQSIYRFRRAEPQVFKAAQA 461

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                              + + +     + +     +          +        +R  
Sbjct: 462  FVREGLGGDLLACDHTRRNAIGVIAAVNQAMQAAQAQGEYAGFRDHTTESRDPGQLLRLP 521

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NKKKSA 390
             I      +     +          R EA    + +R                   ++  
Sbjct: 522  PITAPDGGDAAAATAPEWRDTLTQPRHEAEE-TLRMRECAQAAQWVAAQIAAGVQPQEIM 580

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            ++   R+    ++  L    +         L        + +LL+A+      +++A  +
Sbjct: 581  VLARKRDRLASLQEALRALHVPCVQPEKAELGEAPEVQDIVALLDALVSPGHDLSLARAL 640

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
            + PL             +            +     D+           +    V     
Sbjct: 641  RSPLFGLTDHALVQIALRVR----QTAAEGSPCSWFDVLQKSELLPPDLQALAPVLAQYK 696

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            R  E          D +               +   +        L       +  D  R
Sbjct: 697  RWVETRPP-----HDALHAIYEHGDVPARFAAAAPASQRAGVLANLRALLAAALQQDGGR 751

Query: 571  KLPNLWFEEEGKT--LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
             L    F    K   + +      +    +  +  + ++  + L+     + +  ++   
Sbjct: 752  YLTAYAFVRAMKRPGMRAPGRVEAQAVRLLTIHGAKGLEAHSVLLLDTDARAQKAETMGA 811

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +    +        L    L     P  +A +          L  + AE+   +    +
Sbjct: 812  LV----DWPGEQAAPLRFVFLASESNPPPSAVDL---------LAAELAERQREELNTLY 858

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                  +H                         L  +    +    G  +      L   
Sbjct: 859  VAMTRAKHC------------------------LALSAVQSSTAAPGSWWNRLAESLQDA 894

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
               P                                                    ++ +
Sbjct: 895  PVPPAAPLGDVADDAAVALPQLPP------------YAGAAPGAQAAAAGAPVSTPQSRQ 942

Query: 809  GTLFHNIITEL----IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
            G   H ++ +      ++            + +  D   E       +            
Sbjct: 943  GEAMHQLLEQAGVVGARRAGGVWPARRLAQLARDFDITAEAAAQAAAMARSILQG-EGAW 1001

Query: 865  HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924
                +H E+  +    ++     ++                   +     + DYK+   P
Sbjct: 1002 AWNPDHVEQALNEAPLVYQGQGLRLDRLVRLRQPR---------EGARWWVLDYKSATAP 1052

Query: 925  KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
            ++        PQL  +    +    +Q    +V   F
Sbjct: 1053 ER-------QPQLMAQLRLYREAVGAQFPGERVGAAF 1082


>gi|296270924|ref|YP_003653556.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
 gi|296093711|gb|ADG89663.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
          Length = 682

 Score = 41.8 bits (96), Expect = 0.70,   Method: Composition-based stats.
 Identities = 65/591 (10%), Positives = 129/591 (21%), Gaps = 71/591 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
            SV     T RA  ELR     +           ++       +      +      P  
Sbjct: 52  QSVLAVTFTTRAAAELRHRLRALGAPGV----QARTFHAAALRQLGYFWPMVIGGRMPQV 107

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
              +L  LA +    R  +                          K+LA  I+  +  + 
Sbjct: 108 IESKLPLLAEVSRGVRGGVDRGEL---------------------KDLAAEIEWAKVVQV 146

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
             ED  A   +       L  + +      + ER  E +               AEH   
Sbjct: 147 GPEDYPAAAAKARRTP-PLPPEEVARLYAAYEERRRERHLIDFETILELTAAMIAEHPEV 205

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +G     ++       P    L+       +   V+   D +     +   T    
Sbjct: 206 AARIRGQYRYFVVDEYQDVNPLQKLLLDAWLGGRDDLCVV--GDPNQTIYSFTGATPHYL 263

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
              S+       P  ++ +L+       + V     V      R  ++S+    P+    
Sbjct: 264 TGFSAEF-----PSATVIRLVRTYRSTPQVVSLANRVIAGSPHRMELVSQRPDGPEPV-- 316

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397
                                  E D+E  EA  +A  ++  ++     K+ A++     
Sbjct: 317 ---------------------FTEYDDETAEARGVAHTIKRLIERGVPAKEIAVLFRVNA 355

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            +   +  L          AG+P                   +    A       PLA  
Sbjct: 356 QSEAYEQALGE--------AGVPYVLHGLERFFERPEVRQAMVLLRGAARAAEPEPLAPA 407

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                                 +        +      +        V   + R +E+  
Sbjct: 408 VHAILGGIGLTPEPPTGGTARERWESLKALAELAEDMAVQGAGLPEFVAELERRAAEQHA 467

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                +    L     L             +      +      +   L           
Sbjct: 468 PSVEGVTLASLHAAKGLEWDAVFLVGLTEGMLPIVHAETPEQIEEERRLLYVGITRAREH 527

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                 L+               + +       R            ++  +
Sbjct: 528 LHLSWALARSPGGRRSRRPSRFLDGLTRSARAVREERPARFARGPRQAGPV 578


>gi|224016447|gb|ACN32489.1| putative beta-ketoacyl synthase nonribosomal peptide synthetase
            [Burkholderia contaminans]
          Length = 4469

 Score = 41.4 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 107/921 (11%), Positives = 218/921 (23%), Gaps = 80/921 (8%)

Query: 18   FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP- 76
             + +  AL +G  V             A   + VP++ +    +   I     ++ + P 
Sbjct: 275  LKRLADALADGDRVLGIVRGTAVDQGGAGGGLTVPSRDS----QERVIRRALNQAGLAPG 330

Query: 77   ---------IIKSLGDVVEEKFTA---DLLLSYNLNPPVSNIQR---LLELARLILIWRN 121
                        SLGD +E +  A       + N    + +++     LE A  I     
Sbjct: 331  DVSYVEAHGTGTSLGDPIEVEALAGVYGPGRAANEPLVIGSVKTNIGHLESASGIAGLIK 390

Query: 122  KLPDIIKDLYP------------ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
             L     D  P                      A+ +   +     I  +        + 
Sbjct: 391  VLLSFEHDRIPAHLHFTQPNPHTPWQDIPIRVAADPVAWRRGERRRIAGVSAFGFSGTNA 450

Query: 170  HALKNE---KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
            HA+  E           A   L   S+     LV     +  G     + A       G 
Sbjct: 451  HAIVEEPPVAPAHAAQRALLLLSARSEAALAALVPRYERAIAGATPQELAAICRAAATGR 510

Query: 227  KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD------CHIPTAIWNTITEKSTN 280
                  A         +                   D       H    ++     + + 
Sbjct: 511  SHYPFRAAYVSGARVASAAAPRTGKALRMGFGFGVPDTGVAHALHASEPLFRDAFARCSV 570

Query: 281  ITSSNTTYSTHP--QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
               +  T +     Q++ A+L     ++   V   G         + V+S +      + 
Sbjct: 571  PLDALETDAGRFAIQFAWAELWKGWGLRPAVVSGHGIGEYVAACVAGVVSVADALRLVAA 630

Query: 339  MRNTDILENKIPNIQKCFSDVALIE---ADNEREEAISIAIALRMSLDENKKKSA----L 391
              + + L   + ++      V LI      +  +E       L+++   ++  ++     
Sbjct: 631  RSDAEALRAVLRDMPLARPSVRLISGYLGTDVTDEVTHPQYWLQLAGASDQADASHPPEG 690

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
            +             L R    + +         L  +             +     +L K
Sbjct: 691  LADGWLPPPCAGDALERALAALYVQGAQFDWRALFPAPAQPATTLPNYPFERQR-FSLEK 749

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
             P    G     +  A   L+              DL         T  +N H  +    
Sbjct: 750  IPSPIVGMDAGSIDAALRHLKSSGKYPEDMLNAFPDLLRTAFAAAETVASNAHPLYHVVW 809

Query: 512  LSEEDKELAVLLVDHILQCI--------TPLVTYKTNKNSTCGN-LSISDWTKLTVTCLQ 562
              +     A    D     I          L      + ++C       D+        Q
Sbjct: 810  EQQAAMPAAPAAADASPWLIFADASGVGERLAALLRARGASCSLVRPGIDYVTGAEAGWQ 869

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                     +  L               + E     + +A      +   + G   +   
Sbjct: 870  VAPERPDDFVRLLNETAASGQRIVFLWALDEAVGETRMSAALL--HLVHALVGSEREWTP 927

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                 + ++            +        +                + ++L  A     
Sbjct: 928  STRPRISVVTRDAVEAGEAPHVSGL-AQAALSGLARGAMIEHPEWFGTAIDLDPAAPENE 986

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL--D 740
              A   EM   +R         E       +R + RL  L   +           YL   
Sbjct: 987  TQALLQEMLGESRE--------EQVALRHGARHVARLSPLAPAETAALPVDPDAAYLITG 1038

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
                L   T +    R      L  +    S    + +          R  +LD      
Sbjct: 1039 GFGALGLHTARWLAARGAGTLILVGRQGAASDESQRAIAELRERNVTLRCERLDIADPAA 1098

Query: 801  KDPDRTDRGT-------LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                             + H       K  +     E++ +++  +   +       H  
Sbjct: 1099 VAAFFAALRRDGVPLKGIVHAAGIVGYKPIMQVERDELDAVLQPKVAGAWLLHQQSEHFP 1158

Query: 854  IIWRHLFHKISHSFLEHEEKI 874
            + +  LF  I+ ++   E+  
Sbjct: 1159 LDFFLLFSSIASAWGSREQAH 1179


>gi|289669508|ref|ZP_06490583.1| glutamate-ammonia-ligase adenylyltransferase [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 915

 Score = 41.4 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 77/710 (10%), Positives = 156/710 (21%), Gaps = 44/710 (6%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           ARL       L +   + +             A  +A + A +    + E + WE    L
Sbjct: 174 ARLGQQLARLLDETTAEGFSHRVDLRLRPFGTAGRVALSFAGMDQYFQREGRDWERYAWL 233

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------ 226
           K             +L+    +   R ++  A   +    A + AE     +        
Sbjct: 234 KARAVAGDVDAGEAWLETLRPFVYRRYLDFTALDGLREMKAAITAEVARHDRLDDIKRGP 293

Query: 227 ----------KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                     +   +I G         RL+  +        +       + TA       
Sbjct: 294 GGIREIEFLAQSLQLIRGGREPRLRERRLLPALQALVTAGQIDQENGQALTTAYRFLRRL 353

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +      PQ  L +    L +   +   L +       R        L P  
Sbjct: 354 ENRLQMLCDAQTHALPQAPLDRERIALGLGYAEWAALLDALAPQRARVAAEFAELLAPRV 413

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                  + +      +   + +A I  ++           L      +  ++   +A  
Sbjct: 414 RATAPDMLADYWRALPEGDAAPLAGIGFNDPAG----AHQVLADFAQSSGVRALSDSARA 469

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L R +   L          A +     L  + L              A+A LV      
Sbjct: 470 RLDRVMPALLHAATRASQPDAAVRRMLGLLQATLRRTSYLALLDEQPSALARLVDVLSRS 529

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
               E+  +      EL+  R +    D   L +   D +        +     R     
Sbjct: 530 ALLAERLAAYPLLLDELLDTRISGPLPDRAALHAACADTLHIDDTEAALRELNERRLALS 589

Query: 517 KELAVLLVDHILQCIT---PLVTYKTNKNSTCGNLSISDWTKLTVT-----CLQNVCLDE 568
             +A+  +D   Q +     L         T   L+ S+                     
Sbjct: 590 FRIALATLDGRQQAVESTRQLAWLAEAVVQTVLQLARSEMVAAHGHVPGGSFAIIGYGSL 649

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                    + +   L     ++  +       A  W   + + +               
Sbjct: 650 GGLELGFGSDLDLVFLYDHPPEVDASDGKRPLEAGRWFARLAQKVMALLAAETGAGRLYD 709

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +              L    E    +            ++            Q     
Sbjct: 710 IDVRLRPDGGKGALVSSLASYREYQRERAWTWEHQALVRARAVAGDAALCDAFAQVRRYT 769

Query: 689 E----------------MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                             A     L  + + R +             ++  G       +
Sbjct: 770 LMRVRDTAQLHEDVRKMRARMRAELDRSDAGRLDLKQGAGGLVDLEFVLQAGVLGLAAQQ 829

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
            +     D    +D   +          P  +A            L   P
Sbjct: 830 PQLLDVCDTPALIDALVQVHWLPDDSAAPLHQAHAALVDAGLSCTLDRRP 879


>gi|153003280|ref|YP_001377605.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter
            sp. Fw109-5]
 gi|152026853|gb|ABS24621.1| DEAD/H associated domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 1475

 Score = 41.4 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 77/801 (9%), Positives = 168/801 (20%), Gaps = 25/801 (3%)

Query: 76   PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135
            P   ++G V E+     L     L    S + R +E             +      P  P
Sbjct: 510  PEGVTIGQVDEDFAVESLAGDVFLLGTTSWMIRRVE-------AGIVRVEDAHGAPPGVP 562

Query: 136  LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
                 +P  +  L+  ++ +   +E          A    +  +    A   +   +   
Sbjct: 563  FWNAEAPGRSAALSAEVSALRAELEPRLADPPAAIAWLVAEAALPEAGARQVVDYLAAGR 622

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP----ATARLMSTVAN 251
                      + V  +        + ++    G         ++      T       A 
Sbjct: 623  AALGALPTQDTLVAERFFDEAGGMQLVLHAPFGARTNRAFGLALRKRFCRTFDFELQAAA 682

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
              +G ++  G     P     +    +T            P + +    +          
Sbjct: 683  TDDGVLLSLGPQHAFPLETIFSYVTPATLDEVLEQAVLQAPMFGVRWRWNATRALAIPRL 742

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
              G        R                   +     +           L +   E  +A
Sbjct: 743  FRGKRMPPPIARMRAEDLLAAVFPAQVACQDNAPGGPLEVPDHPLVRETLRDCLTEAMDA 802

Query: 372  ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
              +   L        +  A+ T + +      L    +    D       +  +      
Sbjct: 803  AGLRALLERIAAGEVRLLAVDTPEPSPLSHELLNARPWAYLDDAPLEERRARAVAVRRAL 862

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
                A        A    V   +         +  A   L ++ L         +    +
Sbjct: 863  PAAEASGIGALDPAAIAEVAEQVWPAPRDADEVHDALLDLGVLPLTAAAGWEGWLGELEV 922

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT-------PLVTYKTNKNST 544
                               R+         L                 P  +      + 
Sbjct: 923  AGRAARMTVGEARWWVAAERVGTARGAAVELGGATPTPTPAGSPEAGHPERSDAATAAAR 982

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF----SKIIETGSCIKA 600
                     T  T      +      +         G   +       S+ I   + +  
Sbjct: 983  SRRAPTPTPTPSTPALAGRIEGSARPEPVEARAGAAGAIFAPPLSPLPSERIPDDAVLAV 1042

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
                   +          +  + +S+    L  LE+  L      L          +  +
Sbjct: 1043 VRGWVTHLGPTTARDLAGRIGLPESAAASALLRLEAEGLVLRGTFLPDAPWSAEAPHWCE 1102

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
               L+R+ +  L     E      A         +H+     L   +        LQ   
Sbjct: 1103 RSVLARIHRLTLGRLRREIEPVSTAVFLRFLARWQHVAPGTRLHGAHGLAEVLGQLQGFH 1162

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
               G    D L  R   Y          + +  + R    PP +  PR          + 
Sbjct: 1163 AAAGAWERDLLPARVGGYEPALLDAACLSGEVAWGRLHVAPPQDGSPRRKGAPTRSAPVT 1222

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI---NKNTPEINHLMKQ 837
                     +L+             T    +        + +          E    + +
Sbjct: 1223 LALREDLPWLLEAIAPEPPPLGEIATALVEVLARRGASFLAELAPAVGAPPGETEEALWE 1282

Query: 838  IIDSHFEKENLPPHIDIIWRH 858
            ++ +     +    +  +   
Sbjct: 1283 LVSAGLVTCDGFAGLRALIAP 1303


>gi|239940308|ref|ZP_04692245.1| large ATP-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|239986790|ref|ZP_04707454.1| large ATP-binding protein [Streptomyces roseosporus NRRL 11379]
          Length = 1031

 Score = 41.4 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 64/645 (9%), Positives = 171/645 (26%), Gaps = 29/645 (4%)

Query: 68  TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
           +G +  +L +  ++     +        +  +  PV  + R  +  RL  +   ++ +  
Sbjct: 2   SGTEIALLRLATTVAGAAAKALLTPRPGAGLVPDPVRPLPRPAKPDRLAKVLAGRVSESY 61

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
            DL     L+   S  + +  A  L    D +   +   E L A  +         + D 
Sbjct: 62  ADLPEHERLAALTSVQDTLA-AGVLDT--DRLFALDLDPERLRAELSAPAAGLSARSVDL 118

Query: 188 LKIASKYWTERLVELNASSPVGYQIALM----------RAEAEHLMKGTKGPIIIAGSTG 237
            +         LVE   + P     A +              +   +    P        
Sbjct: 119 YEDLLGRCCAHLVERLTAHPSFAARAAVEQVRAAGRTRELVEDVRDRVGPRPDAADLEFE 178

Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
              A     +       G  +            +  +        +         Q +  
Sbjct: 179 RRYAEFMATANSRMGLFGLTLGRTASEWPLDTAYLGLEVSGDYGITDLHGAHHLNQRTTI 238

Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
           ++   L  +   + R    S +      +   +      S++ + +     +  + + F+
Sbjct: 239 RIEQALGEQDRLLLRGPAGSGKSTLVQWLALNAARQSFGSELTDWNRCVPFVLRL-RAFT 297

Query: 358 DVALIEADNEREEAISIAIALRM----SLDENKKKSALITADRNLARRVKLELTRFGINI 413
            +  + A  E   A  + +        +     +  AL+  D       +L         
Sbjct: 298 ALDALPAPAEFLRAAGVPLHGSAPAGWADRMMGQSRALVLVDGVDEVPDRLRKRTERWLK 357

Query: 414 DISAGIPLSTTLHSSILTSLLN--AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471
           D+    P +  + ++  +++          +   +  + +  +  F       +R++ A 
Sbjct: 358 DLIVAYPRAKYVVTTRPSAVPETWLSGSGFEPHTLLAMRQEDVRAFIGHWHGAARSECAS 417

Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
           E       +    +        D      N        +   +   +L     +     +
Sbjct: 418 EAERAELERYENALRRAVGTRRDLGLLATNPLMCALLCALNRDRRMQLPRARKELYDAAL 477

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             L+  +  +    G   +    +     LQ +     R       +++   L + + + 
Sbjct: 478 DMLLVRRDTEREIIGVEGVDLTREEQTALLQRLAYWLIRNGLVEARQDDVVALITDWLRA 537

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
           +               +   L++   +  +    +  F+  T +  L     +      +
Sbjct: 538 MSQVRGDP------DQVFAHLLNRSGLLREPAPGAVGFVHRTFQDYLGAKAAVE---ARD 588

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
                  A       V+Q  +     ++         E A+G   
Sbjct: 589 FGVLVRHAHEDQWDDVVQMAVGHARPDERASLLTALLERADGEPE 633


>gi|167815126|ref|ZP_02446806.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           91]
          Length = 472

 Score = 41.4 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 40/432 (9%), Positives = 96/432 (22%), Gaps = 31/432 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVEL-NASSPVGYQIALM 215
             +W          + +          A D     +  W   L EL ++  P  ++    
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 216 RAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
                              + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALSPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----K 386
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPNLAP 381

Query: 387 KKSALITADRNLARRVK-------LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               +   D   A  +               I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYWITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVK 451
                 +   ++
Sbjct: 442 DVGAPELVEWLR 453


>gi|254297136|ref|ZP_04964589.1| non-ribosomal peptide synthase [Burkholderia pseudomallei 406e]
 gi|157807620|gb|EDO84790.1| non-ribosomal peptide synthase [Burkholderia pseudomallei 406e]
          Length = 2979

 Score = 41.4 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 56/705 (7%), Positives = 147/705 (20%), Gaps = 54/705 (7%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
              R   L A +P       + A  + +++     +           +   +   A     
Sbjct: 1085 PARDAALGAVAPRNDTQRALCAIWQAVLRVPALGVT-DNFFAVGGDSILSIQAAARAREQ 1143

Query: 256  AIVLPGLD---CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
             IV    D         +   +  +     +   +    P   +      +D    D   
Sbjct: 1144 GIVFSARDIFRHQTVELLAAHVRWQQAPDEARRASAGDMPLLPIHHWFFEVDSTHVDHYH 1203

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
               + +   G      +++L    +      +     P   +        EA +    A 
Sbjct: 1204 QSRLLDVPAGVDAAFVRAWLAALVARHDALRLRLRDTPAGWRA----HFAEAPHADASAR 1259

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
             +   +  +   +        A        +  +      + ++A +    T    +L  
Sbjct: 1260 LMVCDVAWAGAPD-------AALDAFFADARRGVRLADGPLFVAALVAAGATGRGRLLLI 1312

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
              +A+     +  I   ++   A++           +       R    + D   L +  
Sbjct: 1313 GHHAVVDGVSWRVIVADLRRTFAQWPALRPDAPGPASDAYQAWARALVAAADSPALHAER 1372

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
               +   +              +    A  +    L              +         
Sbjct: 1373 AHWLRVLRAPAPALRLDRAAGGDATRRATRIGAVSLNAADTRALLADTHRAYRTQTIELL 1432

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
               L +   +    D  R        E          + +            +      L
Sbjct: 1433 LAGLLLAFRRWQGHDALRIALEGHGREADALAHYGAERGLPDVGETVGWFTSYYPQWLTL 1492

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                +       S    I+             I  G+   V           +   +   
Sbjct: 1493 AGAASAPAPAADSVAAAIMAVKTQYRATPRHGIGYGILRYVAGDPELAAEAAAHAPEIVF 1552

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN-----NIPTIASRWLQRLLVLGGTDF 727
            N           A    + + +       +         +           +   G    
Sbjct: 1553 NYLGQFDVANDEAAGIAVLDLSSRDDIAAARSREHALGIDGGVKDGCLAFEIDYSGAAFD 1612

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
             +++   G  ++   R++    K     RP P     A                      
Sbjct: 1613 DESIAAFGAHFMHALREIAAHCKACAAWRPTPEDFPLAAVTQAELDAWHA---------- 1662

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                                     H  +  L      +     + L+ +   ++  + +
Sbjct: 1663 ------------------------RHPSLETLYPATAIQRGMVFHSLLPKQASAYTNQVH 1698

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                              + LE    ++++        P ++ + 
Sbjct: 1699 ARVGGGTFDAARLRHAWQTVLERHAALRTAFVGFEREQPLQIVLA 1743


>gi|153002984|ref|YP_001377309.1| hypothetical protein Anae109_0107 [Anaeromyxobacter sp. Fw109-5]
 gi|152026557|gb|ABS24325.1| conserved hypothetical protein [Anaeromyxobacter sp. Fw109-5]
          Length = 310

 Score = 41.4 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 71/262 (27%), Gaps = 54/262 (20%)

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP------------DRTDRGTLFHNI 815
            ++S S  ++      A +                P                 G++ H+ 
Sbjct: 8   FSWSKSRHEKFAECRRAYFYAYYGSWGGWEAAPGTPVRELYVLKKLSSRWQWAGSVVHDA 67

Query: 816 I-TELIKKRINKNTPEINHLMKQ--------------------------IIDSHFEKENL 848
           +   L + R+  +   +  ++++                          +++  +     
Sbjct: 68  LKQMLSRARVTGDFLPLERVLERTRTRARAQFAVSREKSYWREASRIVGLVEHEYGDAVA 127

Query: 849 PPHIDIIWRHLFHKISHSFLEH----EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
                 ++  +      +F       E +       + V+       E   I +    D 
Sbjct: 128 DEDWRRLYEGVVDGSLRAFYASPTFEEIRRTPRERWLSVDELDSWEFEGTKIWVA--IDF 185

Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQKLID-PQLSLEAAALKAGSFSQIDCRKVANLFYI 963
                 G V I D+KTG        ++ +D  Q+ + A   +   +S    + +  L Y+
Sbjct: 186 AFRDSDGQVRILDWKTGK-------ERGVDHTQVGIYALYAQRK-WSAPPDQVLGGLVYL 237

Query: 964 RLKQKFKIDCITNDKKKYSADE 985
                       +     +A E
Sbjct: 238 VANGAGAGGETVSVAADPAALE 259


>gi|31044148|gb|AAP42860.1| NanA6 [Streptomyces nanchangensis]
          Length = 1665

 Score = 41.4 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 50/512 (9%), Positives = 112/512 (21%), Gaps = 33/512 (6%)

Query: 100  NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159
               V+    L+   +    W +     +     E    +    A+   LA +L  +    
Sbjct: 1000 PAAVAGPWLLVVPPKGADAWADACERALTADGGEVRRLVTDGRADVAELAASLRAL---- 1055

Query: 160  ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219
              E      + +L                    + +      +  +  +   +     +A
Sbjct: 1056 YAEGPSPAGVLSLLPLDERPH------------EAFPAVTGGVTGTHVLLRALLDAELDA 1103

Query: 220  EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                       +        PA A++               G    +P ++ +   +   
Sbjct: 1104 PLWCATRGAVAVDDDEAPEAPAQAQVWGLGRVAALEHPTAWGGLVDLPASVADLAPDLLC 1163

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
             + +                   L     D +           R  V+    +    + +
Sbjct: 1164 AVLAGRNGEDQVALRPAGAFGRRLLPAPLDAQA-PAQERAWTPRDGVLVTGGVAGAAALV 1222

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399
                  +     +           A    E    +A     +   +   S   T      
Sbjct: 1223 ARWLAADGTKHIVLLAPDG---PAAPGGAELVAELAELGAEATVVDGVPSEPTTRQELAD 1279

Query: 400  RRVKLELTRFGINIDISAGI--PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            R     L    +    + G   PL+      +  +L +A+   +            L   
Sbjct: 1280 RLAASGLRVRTVVHAGAPGDWAPLAELTPDELAEALSDAMGGADRLAE--------LCGL 1331

Query: 458  GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
               +  +  +  A           +     L +    R A   +      W      ED 
Sbjct: 1332 EPDDPVVVFSSIAAVWGGGGHGARAAADAYLDAWARRRQAAGGHVAR-LAWGVWDGSEDP 1390

Query: 518  ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
            E A       L  + P       + +   +   +D  + TV                   
Sbjct: 1391 EAAERAERQGLLALHPTPALAALRRTLDHSGDGTD--QGTVRAGDEGGDRSDVHAVIADV 1448

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
              +        ++       I A    W   +
Sbjct: 1449 HWDRFVPLFTMARASRLFDEIPAARRAWQAAL 1480


>gi|254466418|ref|ZP_05079829.1| ATP-dependent DNA helicase RecQ [Rhodobacterales bacterium Y4I]
 gi|206687326|gb|EDZ47808.1| ATP-dependent DNA helicase RecQ [Rhodobacterales bacterium Y4I]
          Length = 685

 Score = 41.4 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 37/424 (8%), Positives = 109/424 (25%), Gaps = 24/424 (5%)

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
            +F   +  +  A  A  +   + +       DL   +                   L+ 
Sbjct: 277 TRFAREDGLIVVATVAFGMGIDKPDIRWVAHADLPKSIEAYYQEIGRAGRDGAPAETLTL 336

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
              +   L    I + + P      +       L +++        L     +E     N
Sbjct: 337 FGPDDIRLRRSQIDEGLAPPERRAADHARLNALLGLAEALHCRRQKLLGYFGEEAAPCGN 396

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWI--DIITRLIDGETVKPKIEKSSTLFILG 632
               +    +    + + +  S +      +    +I  L+  +  + + ++   L + G
Sbjct: 397 CDLCDTPADVFDGTTVVRKALSAVLRTEEWFGSGHLIDILLGADNERIRAKRHDELSVYG 456

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
             +         +   +      +   +     R  ++ L +   E+ I         A+
Sbjct: 457 CGKEFGKRQWQAVFRQMMGHDLLRPDPERHGALRFTEAALPILRGEQSIELRRDTITSAD 516

Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
               +    S  +               +L             Q    +    D T    
Sbjct: 517 RRPAVKALVSEEDA-------------PLLSALKAKRRALAEAQKVPAYVIFPDRT---- 559

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
             +  +  P    Q    +    K+L        +      + +   ++     D G+++
Sbjct: 560 LIEMAEIRPETLDQMARINGVGAKKLERYGDDFLSVITGAAEQLHPARRKLAGRDSGSVY 619

Query: 813 HNIITELIKKRINK----NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
            +++    +    +         +  +   +      E+      ++      + + +FL
Sbjct: 620 DSLLEAQAQLARGECGTLKPLTCSASLLAKVAQ-LRPEDETGVTRLLGERRAERFAAAFL 678

Query: 869 EHEE 872
           +   
Sbjct: 679 DVLR 682


>gi|296535409|ref|ZP_06897605.1| probable helicase protein [Roseomonas cervicalis ATCC 49957]
 gi|296264274|gb|EFH10703.1| probable helicase protein [Roseomonas cervicalis ATCC 49957]
          Length = 891

 Score = 41.4 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 57/613 (9%), Positives = 141/613 (23%), Gaps = 26/613 (4%)

Query: 79  KSLGDVVEEKFTADLLLSYNLNP-PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
           +   D+ +         + +L   P   +   L  +            ++     E    
Sbjct: 255 RLFPDIQQPSPVQAWAEAVDLPEGPCLAVIEDLTGSGKTEAALLLAHRLMAAGGAEGLFV 314

Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197
              + A A  +   L D                A         +      L   +     
Sbjct: 315 ALPTMATANAMYGRLQDSAPRFFQAGAVPSLALAHGRADLQHAFRETI--LPDPAFSTPA 372

Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257
             +E    +      A +  +    +    G   I  +   +         +    +  +
Sbjct: 373 TALEPGEETAEVQCSAWLAEDRRRALLAQIGVGTIDQALLGVLPVRHAALRLRGLASKVL 432

Query: 258 VL---PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL--DIKREDVKR 312
           V+      D ++   +   +   +    S+    +T PQ   A L+      +       
Sbjct: 433 VIDEAHAFDPYMDEEVLTLLRFHAALGGSAIILSATLPQKKRAALIGAFREGLGVTQPPE 492

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
           L   S  +   +   S    P         D+   ++P+     + +       +   A 
Sbjct: 493 LTASSYPLATLAGAASLVEEPCAARPGLARDLPVRRLPDAGAALAALR------QAHSAG 546

Query: 373 SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSI-- 429
           + A+ +R ++D+    +  +                    +  +        +       
Sbjct: 547 AAAVWIRNTVDDVLAAAEALRGQGIEPLVFHARFAMQDRLLIEAEVLRRFGKSSSGKARQ 606

Query: 430 -LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
            +      + +  D      ++   LA      +   R     +            ++  
Sbjct: 607 GILLATQVVEQSLDLD--FDVLVSDLAPMDLLIQRAGRLWRHRDRNGRPVPSPELLVVSP 664

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
             +        +                   A  L      C  P       + +  G  
Sbjct: 665 DPVEAPAADWLRAALPGTAAVYHDPALLWRGARALFQRGQIC-APGELRSLIEAAAEGET 723

Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
                        ++       +   L + E   T S  +     T +  + +    + +
Sbjct: 724 PPHLAAAADKAFGEDRAAGGQARQQVLRWAEGYTTTSGDWRPDTVTPTRKQDDPRVTLRL 783

Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG---GLNEGVWPKNTAKNPFLS 665
              ++   ++ P  E           E  +     +      GL         A   +LS
Sbjct: 784 --AVLRQGSLTPYAEAEEIRQAWSLSEISVSRRRVVACPVPAGLEAEARAVRAAWGQWLS 841

Query: 666 RVMQSDLNLKTAE 678
                 L +   E
Sbjct: 842 EAPDVLLAILEPE 854


>gi|291296730|ref|YP_003508128.1| ATP-dependent nuclease subunit B [Meiothermus ruber DSM 1279]
 gi|290471689|gb|ADD29108.1| ATP-dependent nuclease subunit B [Meiothermus ruber DSM 1279]
          Length = 778

 Score = 41.4 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 53/570 (9%), Positives = 125/570 (21%), Gaps = 88/570 (15%)

Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
           P  ARL +          V P    +            +       T          +  
Sbjct: 101 PGEARLFARAIAEAKRNGVKPEEIPNQSPETRRLRQVYARYEELKTTLGRWDYDDFRSGA 160

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
           L+ L      ++    V +      +   +              + E           + 
Sbjct: 161 LELLAQGPVQLEPDLVVVDGFRELGVQELRLLRALSRYVPVWVSLPEAPPGLAPDETLES 220

Query: 360 A-----LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL-TRFGINI 413
                 +  A N   EA  +  A++  L +      +            L L   +G+ +
Sbjct: 221 RPIPAQVYRAQNPVSEARWVLRAIKRDLAQGLAALDVAVVAPESRIPALLTLADEYGLPL 280

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
                   + T    +L  LL           +A     PL +                 
Sbjct: 281 VDYRLRTAADTPEGRLLLELLELPDYPTPSRLMAVPDLAPLGRAALE------------- 327

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS-EEDKELAVLLVDHILQCIT 532
              RG         L + +  +       + +       S  E +         +     
Sbjct: 328 ---RGLVGLEATTRLAAELGMQDLWAAWLSRLKPPGEAGSFFEGRGWNHSFHPSLAWAEE 384

Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
            L +    ++S      +    +     L                               
Sbjct: 385 LLDSLPEVRHSPRRVSLLERAYEAHRIAL------------------------------- 413

Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
                      ++      L+       +      + +L    +    +  L L    EG
Sbjct: 414 ---------GPDFRHWWAALLAETYEPQRPP--GGVAVLTPNLASGQRWKKLYLTYAVEG 462

Query: 653 VWPKNTAKNPFLSRVMQSDLNLK-----TAEKYIGQAAHDFEMA-NGTRHLIYTRSLREN 706
            +     ++ F+   ++  L          ++++G+     +        +I T      
Sbjct: 463 AYNTGEQEDYFVPEELRVGLEQALQAAGLPKRFLGRDRLLLQELKTRADEVIITYPEASQ 522

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
             P      L          +   L    +  L           +     P+        
Sbjct: 523 EGPLEPEPMLVG----STPPYLPKLPPASRLELAQQGGYRAPLGRASLGAPR-------- 570

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                  ++++     +  +A++++  D  
Sbjct: 571 -----VEDLRRYRECSFQFWAQQLIPKDER 595


>gi|167910320|ref|ZP_02497411.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           112]
          Length = 483

 Score = 41.4 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 42/461 (9%), Positives = 101/461 (21%), Gaps = 31/461 (6%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVEL-NASSPVGYQIALM 215
             +W          + +          A D     +  W   L EL ++  P  ++    
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 216 RAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
                              + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----K 386
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPCLAP 381

Query: 387 KKSALITADRNLARRVK-------LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               +   D   A  +               I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
                 +   ++       +     +       L A    +
Sbjct: 442 DVGAPELVEWLRADAVAARYGIDATALETVQTWLAASGARR 482


>gi|88856791|ref|ZP_01131445.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
 gi|88813959|gb|EAR23827.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
          Length = 563

 Score = 41.4 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 67/573 (11%), Positives = 141/573 (24%), Gaps = 76/573 (13%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA  ELR+    +  +        ++       +  A    +        
Sbjct: 57  GRVMALTFTNRAAGELRTRLRTLGAEGVA----ARTFHASALSQLNAFWPQTIG-----G 107

Query: 105 NIQRLLEL-ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            + RLLE  AR+I    + L   +                        L D+   IE  +
Sbjct: 108 TMPRLLEGKARMIAHAADSLKLKVD--------------------TATLRDVAAEIEWRK 147

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAE 218
                +    N +      L  D +      +                +A          
Sbjct: 148 TSRMSIEQYGNAERTQPAALTVDRMVELHTAYEATKDARRQIDFEDVLLAAAGMIESEPR 207

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
               ++      ++       P    L+       +   V+   D       +   +   
Sbjct: 208 IAQQVREQYRFFVVDEYQDVSPLQHELLRLWVGDRDDLCVV--GDVSQTIYSFAGASPDF 265

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
               +S+     H    + +L        E V     +     G   + S +     T  
Sbjct: 266 LLRFASH-----HDNAVVLRLERNYRSTPEIVHTANKLMANQPGALTLRSATSEHSATPA 320

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
           +   D  + +   + +  +   +    +  E                    A++      
Sbjct: 321 VTGFDDDQAEAAAVAEAVAG-QIAAGASPEE-------------------IAVLYRINAQ 360

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
           ++ ++  LT  G+   +                 LL          A  T    PL K  
Sbjct: 361 SQAIEAALTAAGVPFLVRGATRFFDQREVKEAIMLLR--------GASITTAVEPLFKSV 412

Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                           A         +  +  L  D  A       V     R S  ++ 
Sbjct: 413 SDVLRSIGWSQEPPESAGAVRDRWESLNVIMRLAEDAAAEMTLREFVADLVDRQSSNNEP 472

Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
           L   +       +  L + K  +      + +++             +DE R+L  +   
Sbjct: 473 LRSAVN------LATLHSAKGLEWDCVHIIGLNEGLLPISYARTPEAIDEERRLLYVGIT 526

Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
              ++L   +S   +TG   +     +++ +  
Sbjct: 527 RARRSLGMSWSASAQTGRAGRRAPSRFLEDVRD 559


>gi|256376817|ref|YP_003100477.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921120|gb|ACU36631.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 931

 Score = 41.4 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 42/472 (8%), Positives = 91/472 (19%), Gaps = 10/472 (2%)

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           +  V   P+G I    +     TA W+    +    ++       H    L         
Sbjct: 344 LLYVEGLPSGDIATHLVAAGAATAPWSVSVLRDAADSALVEQRLDHAADCLKLARAACPA 403

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
             E  +     +          S                      + +   + +      
Sbjct: 404 DDEPGQAALLAALAAVQWRTTPSVVARHLPALAEAAERGHL----DPRDTGALLRYQLWH 459

Query: 366 NEREEAISIAIALRMSLDENKKKSALITADRNLA-RRVKLELTRFGINIDISAGIPLSTT 424
             R EA +    +  +                   R     +              L+  
Sbjct: 460 GRRAEAGTTLRRMEEAAARPGSPVLAEHRVLRDWVRWQHPTVAAAARPATGDRRSALARD 519

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPL----AKFGFPEKYLSRAKNALELVALRGNK 480
               +L +    +       +   LV H L    A                EL   +   
Sbjct: 520 HQEDLLAAAEWVLRNRWMPDSAPELVVHALMTLAACGALARAKHWHDALREELGTGQNTT 579

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
               + D ++ +                             +        +      K +
Sbjct: 580 WKATLADARAHIALLEGDLAGAERQARLALATLSPRNWGQAIASPLAALVLATSTAGKHD 639

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
           +  +    S+    + T      +    H  L                   +     + A
Sbjct: 640 EAESQLKRSVPVTVRDTWHWAVYLRARGHAHLAAGRPHAALADFEECGELAVHWDLDLPA 699

Query: 601 NAIEWIDIITRLID-GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659
                 D++      G   +      + L        R+       L    E        
Sbjct: 700 LLPWRSDVVLAQFALGRGDRAAELVLAQLDRPTADLPRVRGASLRALSRSAELKQRLPML 759

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
           +          D    +       + H      G   ++  R++R       
Sbjct: 760 RESVALLQGCGDQVELSLALAALGSTHHALGEFGAAEVVAKRAVRTAEACGA 811


>gi|116174793|ref|NP_115999.2| spectrin beta 4 isoform sigma1 [Mus musculus]
          Length = 2561

 Score = 41.4 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 84/787 (10%), Positives = 187/787 (23%), Gaps = 66/787 (8%)

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW---TERLVELNASSPV 208
            L+++ +       + E   +L        W L  +  +  ++ W    ERL+E  + S  
Sbjct: 627  LSELQEQAARRRAELEASRSL--------WALLQELEE--AESWARDKERLLEATSGSGG 676

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA--TARLMSTVANHPNGAIVLPGLDCHI 266
                A    +     +      I+ G  G   A     L         G  V PG +   
Sbjct: 677  AAGTAGGAHDLSSTARLLAQHKILQGELGGRRALLQQALRRGEELAAAGGSVGPGAEPLH 736

Query: 267  PT----------AIWNTITEKSTNITSSNTTYSTHPQYS------LAKLLDFLDIKREDV 310
                          W  + E +              Q+       L  L D   +     
Sbjct: 737  LAGLAERAASARRRWQRLEEAAARRERRLQEARALHQFGADLDGLLDWLRDAYRLAAAGD 796

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----DVALIEAD 365
                  S+    R        +      +         +              V ++EA+
Sbjct: 797  FGHDEASSRRLARQHRALTGEVEAHRGPVGGLRRQLATLGGASGAGPLVVALQVRVVEAE 856

Query: 366  NEREEAISIAIALRMSLDE------------NKKKSALITADRNLARRVKLELTR-FGIN 412
                E   +A   R  L +              +          LA RV   L     + 
Sbjct: 857  QLFAEVTEVAALRRQWLRDALAVYRMFGEVHACELWIGEKEQWLLAMRVPDSLDDVEVVQ 916

Query: 413  IDISAGIPLSTTLHSSILT---SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
                +      +L   +L    ++   +   +         +  L         L   + 
Sbjct: 917  HRFESLDQEMNSLMGRVLDVNQTVQELVEGGHPSSDEVRSCQDHLNSRWNRIVELVEQRK 976

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHI 527
                  L    +  ++ ++++ V ++    ++               +     L      
Sbjct: 977  EEMSAVLLVENHVLEVAEVRAQVREKRRAVESAPRAGGALQWRLSGLEAALQALEPRQAA 1036

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            L     L+  +    +T  +    +                         +   + L + 
Sbjct: 1037 LLEEAALLAERFPAQATRLHQGAEELGAEWGALAGAAQACGEAVAAAGRLQRFLRDLDTF 1096

Query: 588  FSKIIETGSCIKANAIEWID--------IITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
               ++       A               +       E V  + E  + +           
Sbjct: 1097 LDWLVRAQEAAGAVEGPLPRSLEEADGLLARHAALKEEVDQREEDYARIVAASEALLASE 1156

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA--NGTRHL 697
              +      L+E +       +  L    +    L  A  Y        +       + +
Sbjct: 1157 GAELGPGLALDEWLPHLEVGWHKLLGLWEERREALVQAHVYQLFLRDLCQALAVLRNQEV 1216

Query: 698  IYTRSLRENNIPTIASRW-LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
              + +     + ++       R  +         ++   Q      R+ +   +Q     
Sbjct: 1217 ALSGAELPCTVESVEEAMKRHRDFLTTMELNQQKMQVAVQAAESLLRQGNAYGEQAQEAV 1276

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
             +     +           K L       + R   +LD   H K    R       H + 
Sbjct: 1277 ARLLEKSQENQLRAQQWMQKLLDQLVLQHFLRDCHELDGWIHEKMLMARDGTREDSHKLH 1336

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQ 875
               ++ +        N    + I+   ++     P +    R    +I   + E E   Q
Sbjct: 1337 KRWLRHQAFMAELAQNKEWLEKIEREGQQLMQEKPELAASVRKKLGEIRQCWAELESTTQ 1396

Query: 876  SSIEKIF 882
            +   ++F
Sbjct: 1397 AKARQLF 1403


>gi|321399344|emb|CAM67317.2| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 2678

 Score = 41.4 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 51/681 (7%), Positives = 135/681 (19%), Gaps = 34/681 (4%)

Query: 94   LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
            + +      ++  Q      +L      +  +  +    +    L     +    A    
Sbjct: 626  IRTAEEARALAEGQERARQRQLQREAVEEAAEQKRQQQRQEEEVLRQRQQHEERAAFACQ 685

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + D    E    E L           +   AD  +  +      L           +  
Sbjct: 686  ALQDR---EGLAREALEQ-AEAAVREHYERGAD--EWLTAALPHELEAQRLVRAAAERRR 739

Query: 214  LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
                +  HL       +       +       + + A            D          
Sbjct: 740  QQEQQQAHLAAEEG--LDRDEVEEAEANAWSWLLSGARVDRVVAATEEGDRVQREYEELR 797

Query: 274  ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
                   +            +  A  +++    R  ++    V  +         +  L 
Sbjct: 798  FERLQLQLREDTAELVHEEAHGRASFIEYEAATRSLLQSHHAVQRQALAAGERRQEVELL 857

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393
               +  R   + +     + +  ++    E               R +     +  A I 
Sbjct: 858  KKAAARREAALRQRFQWELDELDAE----EVSGRAMLREVEREERRTAHLVFLQTLASIR 913

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                LA+             D   G  + +   + I   +   + +     A+  +++  
Sbjct: 914  RKEVLAQHAAA--VAAAAAADEPGGTSVLSEASTMIAAQVHRRVQQRQTDAAVPLMIEGD 971

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                GF +        A           + ++ +L++      A  +          R  
Sbjct: 972  --GDGFDDNTADMVGAATPPQFRTPLITAKELAELRAREASYAAELQAALERLREAERRV 1029

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
             E+  +                                            +       + 
Sbjct: 1030 AEEAAIRAQAEQERQAAHAESQRLLQEAEQRAEQRIREARDAAEQLLQAQLADLRDEAVR 1089

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                    + L+    + +           +      +L + +    +  + +       
Sbjct: 1090 RAEHAAVMQALAEEEQRAVLEA--------KLQAAQRQLDEAQQRAQEAVRRARADAAEM 1141

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
              +              E            L+   +        E+ + + A     A  
Sbjct: 1142 AAADAARAAREAQRRDEEWQERCRAEHLLRLAEQEREK------EEAVRRLAEIEVRAAE 1195

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
               L    + R           ++R            ++   Q        L        
Sbjct: 1196 AVRLAREEAARTAAEAQERLAEMERRQ----QAREAEVQSAAQRVRSVRDSLREFDSSTQ 1251

Query: 754  YKRPKPFPPLEAQPRTYSFSE 774
              R           +    S 
Sbjct: 1252 SSRYATPFRAVLPGQRPPTSS 1272


>gi|126440456|ref|YP_001059549.1| non-ribosomal peptide synthase [Burkholderia pseudomallei 668]
 gi|126219949|gb|ABN83455.1| non-ribosomal peptide synthase [Burkholderia pseudomallei 668]
          Length = 2979

 Score = 41.4 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 56/705 (7%), Positives = 150/705 (21%), Gaps = 54/705 (7%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
              R   L A +P       + A  + +++     +           +   +   A     
Sbjct: 1085 PARDAALGAVAPRNDTQRALCAIWQAVLRVPALGVT-DNFFAVGGDSILSIQAAARAREQ 1143

Query: 256  AIVLPGLD---CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
             IV    D         +   +  +     +   +    P   +      +D    D   
Sbjct: 1144 GIVFSARDIFRHQTVELLAAHVRWQQAPDEARRASAGDMPLLPIHHWFFEVDATHVDHYH 1203

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
               + +   G      +++L    +        +     ++   +      A+    +A 
Sbjct: 1204 QSRLLDVPAGVDAAFVRAWLAALVA------RHDALRLRLRDTPAGWRAHFAEAPHADAS 1257

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
            +     R+ + +     A   A        +  +      + ++A +    T    +L  
Sbjct: 1258 A-----RLMVCDVAWAGAPDAALDAFFADARRGVRLADGPLFVAALVAAGATGRGRLLLI 1312

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
              +A+     +  I   ++   A++           +       R    + D   L +  
Sbjct: 1313 GHHAVVDGVSWRVIVADLRRTFAQWPALRPDAPGPASDAYQAWARALVAAADSPALHAER 1372

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
               +   +              +    A  +    L              +         
Sbjct: 1373 AHWLRVLRAPAPALRLDRAAGGDATRRATRIGAVSLNAADTRALLADTHRAYRTQTIELL 1432

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
               L +   +    D  R        E          + +            +      L
Sbjct: 1433 LAGLLLAFRRWQGHDALRIALEGHGREADALAHYGAERGLPDVGETVGWFTSYYPQWLTL 1492

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                +       S    I+             I  G+   V           +   +   
Sbjct: 1493 AGAASAPAPAADSVAAAIMAVKTQYRATPRHGIGYGILRYVAGDPELAAEAAAHAPEIVF 1552

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN-----NIPTIASRWLQRLLVLGGTDF 727
            N           A    + + +       +         +           +   G    
Sbjct: 1553 NYLGQFDVANDEAAGIAVLDLSSRDDIAAARPREHALGIDGGVKDGCLAFEIDYSGAAFD 1612

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
             +++   G  ++   R++    K     RP P     A                      
Sbjct: 1613 DESIAAFGAHFMHALREIAAHCKACAAWRPTPEDFPLAAVTQAELDAWHA---------- 1662

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                                     H  +  L      +     + L+ +   ++  + +
Sbjct: 1663 ------------------------RHPSLETLYPATAIQRGMVFHSLLPKQASAYTNQVH 1698

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                              + LE    ++++        P ++ + 
Sbjct: 1699 ARVGGGTFDAARLRHAWQTVLERHAALRTAFVGFEREQPLQIVLA 1743


>gi|254252756|ref|ZP_04946074.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Burkholderia
            dolosa AUO158]
 gi|124895365|gb|EAY69245.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Burkholderia
            dolosa AUO158]
          Length = 1238

 Score = 41.4 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 91/908 (10%), Positives = 185/908 (20%), Gaps = 92/908 (10%)

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPI 230
            +   W  L A++L  A +   ER       S       L  A   H      ++      
Sbjct: 335  QRARWLALVAEWLDTAPRALAERKRTRRVVSFDDLLANLYHALHAHPWLADTLRARYPAA 394

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK------------- 277
            +I     + P    +   +     G  +    D       +                   
Sbjct: 395  LIDEFQDTDPLQFAIFDRI--FAPGGPLFLVGDPKQAIYSFRAADLHTYLGRARTRKRVL 452

Query: 278  -STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
             +   ++ +       Q  L      +  +R  +                         +
Sbjct: 453  YARGQSAFDARDRRRVQSFLHVESACVRARRSRLLPGAGRHARTRAVRRRHRSRCGRAIS 512

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                        +       +  A                        +    A++    
Sbjct: 513  GSGTLPGGEHTLLKRDAHAQAAQACAAEIARLMRGARDGHVRLGDTPLSPGDVAVLVQTH 572

Query: 397  NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
                 VK  L  +GI     A   + +T  +  L  +L AI    D   +   +      
Sbjct: 573  RQGSLVKRVLATWGIGSVELAQASVFSTADAEQLERVLAAIDAPGDLRRLRAALASDWFG 632

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                +          E  A R +    D  D  S V      +             +   
Sbjct: 633  L---DARALWRMEQGEGDAQRDDAAVSDGTDAMSWVERFSRYRLLWRERGFAVMWRTFTR 689

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            +      +         +         T    S       T+  L    LD   +   L 
Sbjct: 690  ELRIAERLMAGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGGGEEAQLR 749

Query: 577  FEEE-------------GKTLSSLFSKIIETGSCIKANAIEWIDIIT----RLIDGETVK 619
             E +             G   + +F   +  G   +  A    D                
Sbjct: 750  LESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPASALPDAREYHDDAGDAVLHYG 809

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
               E ++        E        + +            A     SR  +          
Sbjct: 810  CDDEAAAHAARQALREQAAERARLVYVALTRAVYRCYLVAGPYLSSRSTREARRSVLNWL 869

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
              G         +         +          S     +          +   +     
Sbjct: 870  VAGAGLSFDAWLDKPPDEGTLDTAWHALAGGAISVAPLPVPARRERLAAGHDASQTLAAR 929

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR----RILKLDF 795
              TR L    +   +         E         +  +  +D  AV A      +     
Sbjct: 930  HATRVLRDAWRMASFSSLTSSMAREEAGVAAVPDDDLRPDHDALAVLAMTGELAVPDTAA 989

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                  D     RG      +  L +          +      +     + +      + 
Sbjct: 990  AEPPDDDILSFPRGAAAGECLHRLFELSRFTEPGSWHQAALAALHDRPVEADPDLAARLP 1049

Query: 856  WRHLFHKISHSFLEHEE---KIQSSIEKIFV--NIPA----------------------K 888
               +  ++    +  E       + ++       +                         
Sbjct: 1050 --AMMVRLVDDVVHTELVPGMRLADLDPAKRLDEMGFLFPAPSLDLAALRRLLVAHGYPD 1107

Query: 889  MAIESIGIH--LTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKLIDP 935
            +A+E+  +   + GF D I     G   I D+K+                   A      
Sbjct: 1108 VALEAGTLAGFIKGFIDMIVEH-DGRFWIVDWKSNHLGNTPDAYGPRALSVAMADHAYHL 1166

Query: 936  QLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
            Q  L   AL       +        +A   Y+ ++          +     A     + +
Sbjct: 1167 QALLYTVALHRYLRGWLPDYDYDTHIAGYLYLFVRGVRPGWRCDGEPAGVHARRAPRELV 1226

Query: 992  KNLIEIVT 999
              L  ++ 
Sbjct: 1227 DALDRMME 1234


>gi|329934446|ref|ZP_08284525.1| phosphoenolpyruvate synthase [Streptomyces griseoaurantiacus M045]
 gi|329306042|gb|EGG49897.1| phosphoenolpyruvate synthase [Streptomyces griseoaurantiacus M045]
          Length = 872

 Score = 41.4 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 56/531 (10%), Positives = 117/531 (22%), Gaps = 27/531 (5%)

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKC---FSDVALIEADNEREEAISIAIALRM 380
           +  +              T  +E +    ++     + V  + A   R EA         
Sbjct: 238 ARSVGAKQRAVQAVPGGGTRTVEVEPRRQREPALSDARVRELVALGRRIEAHFGRPQDIE 297

Query: 381 SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                   + + +        +                  + T    ++  S+   +   
Sbjct: 298 WCLTGDGFAFVQSRPITTLFPLPENPAGGNHVYLSVGHQQMMTDPMKALGLSVWQLMAMA 357

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
               A   L         F +     A  A  +      ++     D    VL R     
Sbjct: 358 PMLEAGGRL---------FVDAAPRLASPARAVFLDMIGRSDPVTRDALETVLARKDFLP 408

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                                     + + I    T          + S  +     +  
Sbjct: 409 APPDEVPPGPPAGAAPPPPLEADPALVAELIDHSRTSLAALRRDLADRSGPELFDFLLGP 468

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                       P+L     G   +   +  +E     K  A          I  E    
Sbjct: 469 AAQEHKRVLSHPPSLRVITAGMEAAWWLNDKLEEWLGEKNAADTLTLSAPGNITSEMGLA 528

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
            ++ +  +                ++  L +    K+  +  FL R   +DL      + 
Sbjct: 529 LLDVADVVRPYPE-----------VVAFLRDVEHGKHDERGDFLDR--LADLPGGAHARD 575

Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740
             +   D         +  TR        T+    L  +            ++  Q    
Sbjct: 576 ALRDYLDRYGMRCAGEIDLTRERWSERPGTLLPVLLDHVRNAEPGAAERRFEEGRQEARH 635

Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY--AVYARRILKLDFIPH 798
             R++    +       K         R  +F+  ++          +  +   L     
Sbjct: 636 KEREVLERLRALPDGERKAAEAKAMIDRVRAFAGYREYPKYDIVNRFFLYKQALLAEADR 695

Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
                  TDR  +FH  + E  +        E     ++     F     P
Sbjct: 696 LVTAGALTDREDVFHLTLREFREAVRTGRVDEGLVRRRKEEFRFFGTLTPP 746


>gi|16117405|gb|AAK38731.1| beta4-spectrin [Mus musculus]
 gi|20372348|gb|AAK49014.1| beta-spectrin 4 [Mus musculus]
          Length = 2555

 Score = 41.4 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 84/787 (10%), Positives = 187/787 (23%), Gaps = 66/787 (8%)

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW---TERLVELNASSPV 208
            L+++ +       + E   +L        W L  +  +  ++ W    ERL+E  + S  
Sbjct: 622  LSELQEQAARRRAELEASRSL--------WALLQELEE--AESWARDKERLLEATSGSGG 671

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA--TARLMSTVANHPNGAIVLPGLDCHI 266
                A    +     +      I+ G  G   A     L         G  V PG +   
Sbjct: 672  AAGTAGGAHDLSSTARLLAQHKILQGELGGRRALLQQALRRGEELAAAGGSVGPGAEPLH 731

Query: 267  PT----------AIWNTITEKSTNITSSNTTYSTHPQYS------LAKLLDFLDIKREDV 310
                          W  + E +              Q+       L  L D   +     
Sbjct: 732  LAGLAERAASARRRWQRLEEAAARRERRLQEARALHQFGADLDGLLDWLRDAYRLAAAGD 791

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----DVALIEAD 365
                  S+    R        +      +         +              V ++EA+
Sbjct: 792  FGHDEASSRRLARQHRALTGEVEAHRGPVGGLRRQLATLGGASGAGPLVVALQVRVVEAE 851

Query: 366  NEREEAISIAIALRMSLDE------------NKKKSALITADRNLARRVKLELTR-FGIN 412
                E   +A   R  L +              +          LA RV   L     + 
Sbjct: 852  QLFAEVTEVAALRRQWLRDALAVYRMFGEVHACELWIGEKEQWLLAMRVPDSLDDVEVVQ 911

Query: 413  IDISAGIPLSTTLHSSILT---SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
                +      +L   +L    ++   +   +         +  L         L   + 
Sbjct: 912  HRFESLDQEMNSLMGRVLDVNQTVQELVEGGHPSSDEVRSCQDHLNSRWNRIVELVEQRK 971

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHI 527
                  L    +  ++ ++++ V ++    ++               +     L      
Sbjct: 972  EEMSAVLLVENHVLEVAEVRAQVREKRRAVESAPRAGGALQWRLSGLEAALQALEPRQAA 1031

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            L     L+  +    +T  +    +                         +   + L + 
Sbjct: 1032 LLEEAALLAERFPAQATRLHQGAEELGAEWGALAGAAQACGEAVAAAGRLQRFLRDLDTF 1091

Query: 588  FSKIIETGSCIKANAIEWID--------IITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
               ++       A               +       E V  + E  + +           
Sbjct: 1092 LDWLVRAQEAAGAVEGPLPRSLEEADGLLARHAALKEEVDQREEDYARIVAASEALLASE 1151

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA--NGTRHL 697
              +      L+E +       +  L    +    L  A  Y        +       + +
Sbjct: 1152 GAELGPGLALDEWLPHLEVGWHKLLGLWEERREALVQAHVYQLFLRDLCQALAVLRNQEV 1211

Query: 698  IYTRSLRENNIPTIASRW-LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
              + +     + ++       R  +         ++   Q      R+ +   +Q     
Sbjct: 1212 ALSGAELPCTVESVEEAMKRHRDFLTTMELNQQKMQVAVQAAESLLRQGNAYGEQAQEAV 1271

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
             +     +           K L       + R   +LD   H K    R       H + 
Sbjct: 1272 ARLLEKSQENQLRAQQWMQKLLDQLVLQHFLRDCHELDGWIHEKMLMARDGTREDSHKLH 1331

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQ 875
               ++ +        N    + I+   ++     P +    R    +I   + E E   Q
Sbjct: 1332 KRWLRHQAFMAELAQNKEWLEKIEREGQQLMQEKPELAASVRKKLGEIRQCWAELESTTQ 1391

Query: 876  SSIEKIF 882
            +   ++F
Sbjct: 1392 AKARQLF 1398


>gi|254514183|ref|ZP_05126244.1| chromosome segregation protein SMC [gamma proteobacterium NOR5-3]
 gi|219676426|gb|EED32791.1| chromosome segregation protein SMC [gamma proteobacterium NOR5-3]
          Length = 1166

 Score = 41.4 bits (95), Expect = 0.85,   Method: Composition-based stats.
 Identities = 67/778 (8%), Positives = 165/778 (21%), Gaps = 46/778 (5%)

Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK--- 193
               +      L   L   +  ++ + +  E    LK E+  +   L A  L+       
Sbjct: 186 RTLENLERLTDLRDELERQLQHLQRQSQAAEKYKNLKAEERALRQQLMAAQLRELRTKHA 245

Query: 194 -----------YWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                                       Q  L  +E    +   +G     GS  S    
Sbjct: 246 AAAHEVGEHEVRLEAEYAHQQRVDTSLEQHRLTHSERNDELVEVQGRFYAIGSEVSR-IE 304

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             +             L   +  +  A  +   +            S  P     +    
Sbjct: 305 QEIRYQGEKAQQINEDLRSTELGLAQANQHLEEDGDRLAGWEEELASLGPALESQRAAAA 364

Query: 303 LDIKREDVKRL-GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                              +      +                LE+ +  +QK    +  
Sbjct: 365 SASAALADAESKMQSWQSDWDEFNQKAAVPRQQTEVQQSRIQHLEHSLARLQKRLEQLGQ 424

Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL---TRFGINIDISAG 418
             A    +EA+     LR  L+   + S ++             L    R          
Sbjct: 425 ERASQNDDEAMEALGTLREDLELANETSEVLAEKLQSLEAQLSGLRTQRRERQEQLNELR 484

Query: 419 IPLSTTLHS-SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS--RAKNALELVA 475
             L       + L +L  A  +  +   +   ++                 A+    +  
Sbjct: 485 SKLQIQRGREASLDALQQAAKERAEGGKVGDWLRQRGLSENPRLLDDLQVEARWQSAVEI 544

Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
           +         +D    + D +    +        +       +     +         L 
Sbjct: 545 VLSGALQGVCVDSVDTLDDALGELASGDLTLFEGATNVPYADDSLAAKLQSDSPARALLA 604

Query: 536 TYKTNKNSTCGNLSISDWTK----------LTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
             +  +NS       +D                            +   +  ++E + L 
Sbjct: 605 AVRCAENSAQARARRADLAPGESLITPEGLWFGRNWVRALHGGETESGLIGRQQELEALR 664

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
              +++ ET    K    +  + +               ++       L           
Sbjct: 665 LEIAQLAETEVEAKDALADSDERLATAEQQLKASRAEADTAARKRSDVLSQLRAEEAKQE 724

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY------ 699
                        ++        QS +    ++      + D + A+    L        
Sbjct: 725 QVLARRERLDHEVSELRAQFEQEQSAIGEARSKLAAAIESMDGDTADREARLSLRDGLRS 784

Query: 700 -TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
              + R +   +  +     L         + ++       +   +L    +     R  
Sbjct: 785 ALDAARSDAHQSRDAAHQAALRHQSLVTQSETIRSALVRSREQVEQLGERLETLRSARLD 844

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF---IPHFKKDPDRTDRGTLFHNI 815
              PL+            +L ++     AR+ L           ++      R       
Sbjct: 845 NDEPLDDLKMNLESQLALRLESETRLTAARQALADIEHTLRETEQERIQIEQRAANIREK 904

Query: 816 IT--ELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
           +       + +      +   ++ +        +          W     +  +    
Sbjct: 905 LESRRFAVQGLEHQQNTLQGQLEDLGGNLESLLEALPETVDMTAWEAELERCGNRIAR 962


>gi|29829614|ref|NP_824248.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606722|dbj|BAC70783.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 770

 Score = 41.4 bits (95), Expect = 0.85,   Method: Composition-based stats.
 Identities = 40/410 (9%), Positives = 92/410 (22%), Gaps = 61/410 (14%)

Query: 26  LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
           +   +    R   L P   +SV     T RA  E+R    ++           ++     
Sbjct: 90  ITHRIAYGVRAGILQP---SSVLAVTFTNRAAGEMRGRLRQLGASGV----QARTFHSAA 142

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
             +              V        L R++      + D                    
Sbjct: 143 LRQLQYFW------PKAVGGG-----LPRIVDRKIQIVADAAAACRIRLDRGELRDVTAE 191

Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205
           I  +K    +         K          +                  + +   +    
Sbjct: 192 IEWSKVTQTVPADYAAAAAKAAREAPRDPAEIAQ-----------IYATYEDLKRDRAVI 240

Query: 206 SPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                 +  +    +        +      ++       P   RL+       +   V+ 
Sbjct: 241 DFEDVLLLTVGILQDRQDIAEAVRAQYQHFVVDEYQDVSPLQQRLLDLWLGERDSLCVV- 299

Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
             D       +   T        +      HP  ++ KL+       + V     +  + 
Sbjct: 300 -GDASQTIYSFTGATPDHLLDFRTR-----HPGATVVKLVRDYRSSPQVVHLANGLLAQA 353

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
            GR+                       ++ + ++   +    E  +E  EA   A  +R 
Sbjct: 354 RGRAA------------------EHRLELISQREPGPEPVYTEYTDEPAEAEGAARRIRD 395

Query: 381 SLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
            L       + A++    + +   +  L   G+   +             
Sbjct: 396 LLASGVPAAEIAILFRTNSQSEIYEQALADAGVPYQLRGAERFFDRPEVR 445


>gi|76808584|ref|YP_334050.1| nonribosomal peptide synthetase [Burkholderia pseudomallei 1710b]
 gi|254191469|ref|ZP_04897973.1| non-ribosomal peptide synthase [Burkholderia pseudomallei Pasteur
            52237]
 gi|254258486|ref|ZP_04949540.1| non-ribosomal peptide synthase [Burkholderia pseudomallei 1710a]
 gi|76578037|gb|ABA47512.1| nonribosomal peptide synthetase [Burkholderia pseudomallei 1710b]
 gi|157939141|gb|EDO94811.1| non-ribosomal peptide synthase [Burkholderia pseudomallei Pasteur
            52237]
 gi|254217175|gb|EET06559.1| non-ribosomal peptide synthase [Burkholderia pseudomallei 1710a]
          Length = 2979

 Score = 41.4 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 55/705 (7%), Positives = 146/705 (20%), Gaps = 54/705 (7%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
              R   L A +P       + A  + +++     +           +   +   A     
Sbjct: 1085 PARDAALGAVAPRNDTQRALCAIWQAVLRVPALGVT-DNFFAVGGDSILSIQAAARAREQ 1143

Query: 256  AIVLPGLD---CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
             IV    D         +   +  +     +   +    P   +      +D    D   
Sbjct: 1144 GIVFSARDIFRHQTVELLAAHVRWQQAPDEARRASAGDMPLLPIHHWFFEVDSTHVDHYH 1203

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
               + +   G      +++L    +      +     P   +        EA +    A 
Sbjct: 1204 QSRLLDVPAGVDAAFVRAWLAALVARHDALRLRLRDTPAGWRA----HFAEAPHADASAR 1259

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
             +   +  +   +        A        +  +      + ++A +    T    +L  
Sbjct: 1260 LMVCDVAWAGAPD-------AALDAFFADARRGVRLADGPLFVAALVAAGATGRGRLLLI 1312

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
              +A+     +  I   ++   A++           +       R    + D   L +  
Sbjct: 1313 GHHAVVDGVSWRVIVADLRRTFAQWPALRPDAPGPASDAYQAWARALVAAADSPALHAER 1372

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
               +   +              +    A  +    L              +         
Sbjct: 1373 AHWLRVLRAPAPALRLDRAAGGDATRRATRIGAVSLNAADTRALLADTHRAYRTQTIELL 1432

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
               L +   +    D  R        E          + +            +      L
Sbjct: 1433 LAGLLLAFRRWQGHDALRIALEGHGREADALAHYGAERGLPDVGETVGWFTSYYPQWLTL 1492

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                +       S    I+             I  G+   V           +   +   
Sbjct: 1493 AGAASAPAPAADSVAAAIMAVKTQYRATPRHGIGYGILRYVAGDPELAAEAAAHAPEIVF 1552

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN-----NIPTIASRWLQRLLVLGGTDF 727
            N           A    + + +       +         +           +   G    
Sbjct: 1553 NYLGQFDVANDEAAGIAVLDLSSRDDIAAARSREHALGIDGGVKDGCLAFEIDYSGAAFD 1612

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
             +++   G  ++   R++    K     RP P                            
Sbjct: 1613 DESIAAFGAHFMHALREIAAHCKACAAWRPTPEDFPLVAVTQAELDAWHA---------- 1662

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                                     H  +  L      +     + L+ +   ++  + +
Sbjct: 1663 ------------------------RHPSLETLYPATAIQRGMVFHSLLPKQASAYTNQVH 1698

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                              + LE    ++++        P ++ + 
Sbjct: 1699 ARVGGGTFDAARLRHAWQTVLERHAALRTAFVGFEREQPLQIVLA 1743


>gi|18147602|dbj|BAB83243.1| betaIV-spectrin sigma1 [Mus musculus]
          Length = 2561

 Score = 41.4 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 84/787 (10%), Positives = 187/787 (23%), Gaps = 66/787 (8%)

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW---TERLVELNASSPV 208
            L+++ +       + E   +L        W L  +  +  ++ W    ERL+E  + S  
Sbjct: 627  LSELQEQAARRRAELEASRSL--------WALLQELEE--AESWARDKERLLEATSGSGG 676

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA--TARLMSTVANHPNGAIVLPGLDCHI 266
                A    +     +      I+ G  G   A     L         G  V PG +   
Sbjct: 677  AAGTAGGAHDLSSTARLLAQHKILQGELGGRRALLQQALRRGEELAAAGGSVGPGAEPLH 736

Query: 267  PT----------AIWNTITEKSTNITSSNTTYSTHPQYS------LAKLLDFLDIKREDV 310
                          W  + E +              Q+       L  L D   +     
Sbjct: 737  LAGLAERAASARRRWQRLEEAAARRERRLQEARALHQFGADLDGLLDWLRDAYRLAAAGD 796

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----DVALIEAD 365
                  S+    R        +      +         +              V ++EA+
Sbjct: 797  FGHDEASSRRLARQHRALTGEVEAHRGPVGGLRRQLATLGGASGAGPLVVALQVRVVEAE 856

Query: 366  NEREEAISIAIALRMSLDE------------NKKKSALITADRNLARRVKLELTR-FGIN 412
                E   +A   R  L +              +          LA RV   L     + 
Sbjct: 857  QLFAEVTEVAALRRQWLRDALAVYRMFGEVHACELWIGEKEQWLLAMRVPDSLDDVEVVQ 916

Query: 413  IDISAGIPLSTTLHSSILT---SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
                +      +L   +L    ++   +   +         +  L         L   + 
Sbjct: 917  HRFESLDQEMNSLMGRVLDVNQTVQELVEGGHPSSDEVRSCQDHLNSRWNRIVELVEQRK 976

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHI 527
                  L    +  ++ ++++ V ++    ++               +     L      
Sbjct: 977  EEMSAVLLVENHVLEVAEVRAQVREKRRAVESAPRAGGALQWRLSGLEAALQALEPRQAA 1036

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            L     L+  +    +T  +    +                         +   + L + 
Sbjct: 1037 LLEEAALLAERFPAQATRLHQGAEELGAEWGALAGAAQACGEAVAAAGRLQRFLRDLDTF 1096

Query: 588  FSKIIETGSCIKANAIEWID--------IITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
               ++       A               +       E V  + E  + +           
Sbjct: 1097 LDWLVRAQEAAGAVEGPLPRSLEEADGLLARHAALKEEVDQREEDYARIVAASEALLASE 1156

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA--NGTRHL 697
              +      L+E +       +  L    +    L  A  Y        +       + +
Sbjct: 1157 GAELGPGLALDEWLPHLEVGWHKLLGLWEERREALVQAHVYQLFLRDLCQALAVLRNQEV 1216

Query: 698  IYTRSLRENNIPTIASRW-LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
              + +     + ++       R  +         ++   Q      R+ +   +Q     
Sbjct: 1217 ALSGAELPCTVESVEEAMKRHRDFLTTMELNQQKMQVAVQAAESLLRQGNAYGEQAQEAV 1276

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
             +     +           K L       + R   +LD   H K    R       H + 
Sbjct: 1277 ARLLEKSQENQLRAQQWMQKLLDQLVLQHFLRDCHELDGWIHEKMLMARDGTREDSHKLH 1336

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQ 875
               ++ +        N    + I+   ++     P +    R    +I   + E E   Q
Sbjct: 1337 KRWLRHQAFMAELAQNKEWLEKIEREGQQLMQEKPELAASVRKKLGEIRQCWAELESTTQ 1396

Query: 876  SSIEKIF 882
            +   ++F
Sbjct: 1397 AKARQLF 1403


>gi|167893636|ref|ZP_02481038.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           7894]
          Length = 459

 Score = 41.4 bits (95), Expect = 0.87,   Method: Composition-based stats.
 Identities = 39/432 (9%), Positives = 94/432 (21%), Gaps = 31/432 (7%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVEL-NASSPVGYQIALM 215
             +W          + +          A D     +  W   L EL ++  P  ++    
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 216 RAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
                              + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--- 387
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLAP 381

Query: 388 --------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                     A      +             I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVK 451
                 +   ++
Sbjct: 442 DVGAPELVEWLR 453


>gi|262194197|ref|YP_003265406.1| hypothetical protein Hoch_0903 [Haliangium ochraceum DSM 14365]
 gi|262077544|gb|ACY13513.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
          Length = 387

 Score = 41.4 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 16/182 (8%)

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--I 824
               S+S + +    P +     I       H     +    GT  H  +   +++    
Sbjct: 1   MPRLSYSRLSRYEACPLSYRLHYID-----QHVADRGEPVRFGTAVHAALEHAVREHLAA 55

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPP-HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
            +  P  +  +  +  + + +  L    +      L H+        E+ +   ++ + V
Sbjct: 56  ERCGPLSHERVAVLWQNAWTESGLSGLSLFREGLALLHRFVR-----EQGVVDHLDVLAV 110

Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
               ++ +   G  + G+ DR+D +    VD+ DYKT               Q+SL   A
Sbjct: 111 EQEFRITV--GGFEVLGYLDRVDRVDDETVDVVDYKTNRQLFTRDELDG-SLQMSLYQLA 167

Query: 944 LK 945
            +
Sbjct: 168 AQ 169


>gi|262194027|ref|YP_003265236.1| hypothetical protein Hoch_0715 [Haliangium ochraceum DSM 14365]
 gi|262077374|gb|ACY13343.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
          Length = 387

 Score = 41.4 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 16/182 (8%)

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--I 824
               S+S + +    P +     I       H     +    GT  H  +   +++    
Sbjct: 1   MPRLSYSRLSRYEACPLSYRLHYID-----QHVADRGEPVRFGTAVHAALEHAVREHLAA 55

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPP-HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
            +  P  +  +  +  + + +  L    +      L H+        E+ +   ++ + V
Sbjct: 56  ERCGPLSHERVAVLWQNAWTESGLSGLSLFREGLALLHRFVR-----EQGVVDHLDVLAV 110

Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
               ++ +   G  + G+ DR+D +    VD+ DYKT               Q+SL   A
Sbjct: 111 EQEFRITV--GGFEVLGYLDRVDRVDDETVDVVDYKTNRQLFTRDELDG-SLQMSLYQLA 167

Query: 944 LK 945
            +
Sbjct: 168 AQ 169


>gi|86608777|ref|YP_477539.1| leucine-rich repeat-containing protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557319|gb|ABD02276.1| leucine rich repeat protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 284

 Score = 41.4 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 39/171 (22%)

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-RTDRGTLFHNIITELIK-KRINKN 827
            S S +  L + P       + +L +      + +    RG  FH ++    + +++   
Sbjct: 24  LSASSLALLDHCPRLFRYVYLERLIWPAASVFEHELEQRRGRQFHRLVEWHSRGRQVEPR 83

Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
              ++ +++Q         +  P                              +   +P 
Sbjct: 84  LSALDEVVQQWWQVFLASSHAHPQGR---------------------------VLAELPL 116

Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
              IE  G  L    DR+ ++  G + I D+KT         Q+  D QL+
Sbjct: 117 WQRIE--GFKLIARLDRLVIIP-GSLHILDWKT-------ERQRPRDAQLA 157


>gi|322818500|gb|EFZ25903.1| hypothetical protein TCSYLVIO_7943 [Trypanosoma cruzi]
          Length = 2142

 Score = 41.4 bits (95), Expect = 0.89,   Method: Composition-based stats.
 Identities = 50/578 (8%), Positives = 143/578 (24%), Gaps = 34/578 (5%)

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            E   R     ++    +     +  + +           DVA+ +  +E         A+
Sbjct: 859  ERRARMNHSREAVRHEEVLLAGDRLLHDASGTRFLDAM-DVAVRQFSSE---------AV 908

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
            R++ +E+ ++ +L+ A+R     +   L          A   L+       L S +    
Sbjct: 909  RIAQEEHLERLSLVQAERFECLSLTAPLETQARRSKKDAVEQLAE------LHSTIEKTT 962

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                + A   LV+    +             +  +   R  +     ++ + L   +   
Sbjct: 963  AEGAWRARLALVETEELRVRDGIYNDEAGNRSWWVADERRQRMELTSLETERLRRAKEVA 1022

Query: 499  QKNNT-------HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            +  +                  EE    A L+ + I             +         +
Sbjct: 1023 RLRDKMGECESVEEQRRIGVQREEASAWATLVREQIRDAANAYKKEGQRRIEETRRERYA 1082

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            D ++     L+ +  DE      ++ +E           +  +   ++    E       
Sbjct: 1083 DRSQRCRRALEELLQDEDDDRHYIFEDEREARRRLRRQALQLSCDILEKKKTEEKIPSQP 1142

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            ++  + +        +       E ++       L    E +  +   +   L    +++
Sbjct: 1143 VLASQGIGNGPVNDPSAV--TVDEEKIRQKRLKELAREEELIEAQTRLREAELRIAEEAE 1200

Query: 672  LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDN 730
            L  ++ E+     A    +          R  R          + + RL           
Sbjct: 1201 LRARSEEEKRAALAESVRLLREAEQRAEERIRRARQEAERYVEQEVSRLRDANERQATHA 1260

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
               R     + +  ++   +   +   +         R            +   V     
Sbjct: 1261 AALRAIEEEEKSAVVEAKLRAAEHALREAERRAADDVRRAKAEAEAFAAAEAQRVALEAK 1320

Query: 791  LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
             +L      ++                E+ ++           ++    ++    E    
Sbjct: 1321 RQLQEYREQQEQH--------LRQKDLEVQQRLRGIEQQAQEAILAAKAEASRLAEEAKR 1372

Query: 851  HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
             ++ +      + +           +           +
Sbjct: 1373 RLEELEARRVERAAAVDAAKVSVRAAQQRMREFEESRE 1410


>gi|269929071|ref|YP_003321392.1| serine/threonine protein kinase [Sphaerobacter thermophilus DSM
            20745]
 gi|269788428|gb|ACZ40570.1| serine/threonine protein kinase [Sphaerobacter thermophilus DSM
            20745]
          Length = 1765

 Score = 41.4 bits (95), Expect = 0.90,   Method: Composition-based stats.
 Identities = 86/834 (10%), Positives = 199/834 (23%), Gaps = 60/834 (7%)

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL-IWRNKLPDIIKDLYPESPLSLPI 140
              V  +     + LS  L   V    R +    ++   W   L D  +      P  +  
Sbjct: 528  HQVEADVVERVVTLSGGLPYAVEEYVRAMLETGVLRPSWGTWLVDRARLASLSLPADIAR 587

Query: 141  SPANAI-WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199
              +  I  L+     ++D        +    A    +      +AA    +A+       
Sbjct: 588  LLSERIDGLSPATRALLDAAAVLGTSFRLGEAEAMAQLTPPEAIAALDAALAAHVVEHDE 647

Query: 200  VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259
             +    +    + AL+   A+   +        A +      T   +  +A H      L
Sbjct: 648  GDTYRFTHDRVREALLARLADAERRSLHQR--AAETLAQAGVTETGIYRLARHYAEGDPL 705

Query: 260  PGLDCHIPTAIWNTIT--------EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                      +   I         E    + ++             +L   L        
Sbjct: 706  RSPVPAYEANLAAGIRALEHFAYNEAYDFLDTARRIARDAGLPPDERLDRALGDVCSRTG 765

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSD-----MRNTDILENKIPNIQKCFSDVALIEADN 366
            R+   +  +     + + +                   +E     I+  F+++       
Sbjct: 766  RVDEATAHLESALKLCTDATGRAQLRARLARIQIWELEIERAAQEIEAAFAEIGETLEAR 825

Query: 367  EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
                A +I       LD+    +           RV + L    I   +  G P  +T+ 
Sbjct: 826  AGRMARAIGAWAGFVLDDRLGGAIPPPPGDPARLRVLVALYHLAIEAAMLEGRP-QSTVL 884

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
             ++L SL  A         I   V + +                      R   +     
Sbjct: 885  QNLLLSLGAARALGPSRELIQANVDYGMLLATMRRVEA-------MQSYFRKAIDLAHAR 937

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            D + ++   +  +    H+    +    E + LA   ++     + P      + +    
Sbjct: 938  DDRPMLAYALLYEAIAHHI----AGRPREAETLATRCLEQHADWLAPAEYLNGSGDLIWN 993

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
             +      +      + +     R           + + +    ++E             
Sbjct: 994  LVLRGYIREARRWIEEAIARTGGRITNQGGAHRVQRYMDAYALAVLEVLGEAALAREYAR 1053

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
                 + D    +   E   +  +L  +E    + +   +    E +             
Sbjct: 1054 RAEALVNDHPRDRFAWEIYLSHRLLALVERGGSDAEIEEVIARGEEL------------- 1100

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL--GG 724
              +S   L    ++     H              R          A  +L+R+       
Sbjct: 1101 DFRSGRGLPHFRRFFVFQGH--ARLLQVERAPANRRAAALRRLNEAIEFLERIADHPTLR 1158

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
               +     R +        L+   +          P +  +        +  L N P A
Sbjct: 1159 AHTWVLAAARARLEGRHHAALELLDRADRLATEIDAPWVLFEATRQRALVLAALGNQPGA 1218

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
              A R        H         R            +  +       +  ++Q +D+  +
Sbjct: 1219 ERAARYAHALATEHGWVHRAARVRADF---PAATAREPALEPAVEPSSRRLQQHLDALLQ 1275

Query: 845  KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
                        +           +    +  ++  +         I+   + L
Sbjct: 1276 VSLATATALDPEQ-----------QSRAALDEAVRILGAERAFLFRIDGPDLRL 1318


>gi|148692241|gb|EDL24188.1| spectrin beta 4, isoform CRA_a [Mus musculus]
          Length = 2608

 Score = 41.4 bits (95), Expect = 0.90,   Method: Composition-based stats.
 Identities = 84/787 (10%), Positives = 187/787 (23%), Gaps = 66/787 (8%)

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW---TERLVELNASSPV 208
            L+++ +       + E   +L        W L  +  +  ++ W    ERL+E  + S  
Sbjct: 674  LSELQEQAARRRAELEASRSL--------WALLQELEE--AESWARDKERLLEATSGSGG 723

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA--TARLMSTVANHPNGAIVLPGLDCHI 266
                A    +     +      I+ G  G   A     L         G  V PG +   
Sbjct: 724  AAGTAGGAHDLSSTARLLAQHKILQGELGGRRALLQQALRRGEELAAAGGSVGPGAEPLH 783

Query: 267  PT----------AIWNTITEKSTNITSSNTTYSTHPQYS------LAKLLDFLDIKREDV 310
                          W  + E +              Q+       L  L D   +     
Sbjct: 784  LAGLAERAASARRRWQRLEEAAARRERRLQEARALHQFGADLDGLLDWLRDAYRLAAAGD 843

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----DVALIEAD 365
                  S+    R        +      +         +              V ++EA+
Sbjct: 844  FGHDEASSRRLARQHRALTGEVEAHRGPVGGLRRQLATLGGASGAGPLVVALQVRVVEAE 903

Query: 366  NEREEAISIAIALRMSLDE------------NKKKSALITADRNLARRVKLELTR-FGIN 412
                E   +A   R  L +              +          LA RV   L     + 
Sbjct: 904  QLFAEVTEVAALRRQWLRDALAVYRMFGEVHACELWIGEKEQWLLAMRVPDSLDDVEVVQ 963

Query: 413  IDISAGIPLSTTLHSSILT---SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
                +      +L   +L    ++   +   +         +  L         L   + 
Sbjct: 964  HRFESLDQEMNSLMGRVLDVNQTVQELVEGGHPSSDEVRSCQDHLNSRWNRIVELVEQRK 1023

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHI 527
                  L    +  ++ ++++ V ++    ++               +     L      
Sbjct: 1024 EEMSAVLLVENHVLEVAEVRAQVREKRRAVESAPRAGGALQWRLSGLEAALQALEPRQAA 1083

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            L     L+  +    +T  +    +                         +   + L + 
Sbjct: 1084 LLEEAALLAERFPAQATRLHQGAEELGAEWGALAGAAQACGEAVAAAGRLQRFLRDLDTF 1143

Query: 588  FSKIIETGSCIKANAIEWID--------IITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
               ++       A               +       E V  + E  + +           
Sbjct: 1144 LDWLVRAQEAAGAVEGPLPRSLEEADGLLARHAALKEEVDQREEDYARIVAASEALLASE 1203

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA--NGTRHL 697
              +      L+E +       +  L    +    L  A  Y        +       + +
Sbjct: 1204 GAELGPGLALDEWLPHLEVGWHKLLGLWEERREALVQAHVYQLFLRDLCQALAVLRNQEV 1263

Query: 698  IYTRSLRENNIPTIASRW-LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
              + +     + ++       R  +         ++   Q      R+ +   +Q     
Sbjct: 1264 ALSGAELPCTVESVEEAMKRHRDFLTTMELNQQKMQVAVQAAESLLRQGNAYGEQAQEAV 1323

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
             +     +           K L       + R   +LD   H K    R       H + 
Sbjct: 1324 ARLLEKSQENQLRAQQWMQKLLDQLVLQHFLRDCHELDGWIHEKMLMARDGTREDSHKLH 1383

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQ 875
               ++ +        N    + I+   ++     P +    R    +I   + E E   Q
Sbjct: 1384 KRWLRHQAFMAELAQNKEWLEKIEREGQQLMQEKPELAASVRKKLGEIRQCWAELESTTQ 1443

Query: 876  SSIEKIF 882
            +   ++F
Sbjct: 1444 AKARQLF 1450


>gi|171058460|ref|YP_001790809.1| exodeoxyribonuclease V subunit beta [Leptothrix cholodnii SP-6]
 gi|170775905|gb|ACB34044.1| exodeoxyribonuclease V, beta subunit [Leptothrix cholodnii SP-6]
          Length = 1272

 Score = 41.4 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 95/919 (10%), Positives = 202/919 (21%), Gaps = 113/919 (12%)

Query: 182  LLAADF-LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP----IIIAGST 236
               A F +         +      +  V    A +   A   +           +I    
Sbjct: 347  QRHAAFGVARRLAALKRQAGRFGYADLVERLDAALHGPAGERLAQRIRTQYPLALIDEFQ 406

Query: 237  GSIPATARLMSTVANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
             + P   RL   + +         +L   D       +      S       T    +  
Sbjct: 407  DTSPLQYRLFDRLYDVAANRADTGLLLIGDPKQSIYGFRGADIYSYLKAREATAERRYML 466

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
             +  +    L                    +  + K        D          +    
Sbjct: 467  TTNFRSTAALVAA--VNTLFEQAEAARPEGAFALGKDESRALPFDPVAARGRGEVLVAGG 524

Query: 354  KCFSDVALIEADN-------EREEAISIAIALRMSL---------------DENKKKSAL 391
                 + L             RE A   A  L   L                      A+
Sbjct: 525  AALPALQLAWLPGAGQAQVQRRELADHAAAQLVAWLADPTCGWSEGDAPLRRLRPSDVAV 584

Query: 392  ITADRNLARRVKLELTRFG-INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            +  D++ A  ++  L R G  ++ +S    +  +  ++ L   L A+ +  D +      
Sbjct: 585  LVRDQHEAAAIRRALQRRGVHSVYLSDKDSVYASAEAADLLRWLMAVAQPLDGLLARAAY 644

Query: 451  KHPLAKFGFPEKYL-----------SRAKNALELVALRGNKNSYDIMDLKSLVLDR---- 495
             +     G  E                    L  V  R    +     L +L L      
Sbjct: 645  ANASWDLGLDELAAHVHDETAWDARLALLQQLHGVWQRQGVLTMLRQTLHALDLPARWLA 704

Query: 496  -------IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
                        N  H+       S   +  A L+              +          
Sbjct: 705  EGNEAAGERRLTNVLHLGELLQAASAHLEGEAGLIRWLAAMVRGGGDGAQGGSGMGGSAA 764

Query: 549  SISDWTKLTVTCLQNVCL-----------DEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
            +        +  L++                   +  L F    +         +E    
Sbjct: 765  AAGAGGDAHIVRLESDAQLVQVVTVHKSKGLEYPVVMLPFANSARAWRKKRHGALEWVDD 824

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                A+++      +   E  + + +       L      L     +   G N    P +
Sbjct: 825  DGRRALDFAQQPEHVAAAERERLREDLRLFYVALTRARHALWLGIGVPPTGRNGSAGPLS 884

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQA----AHDFEMANGTRHLIYTRSLRENNIPTIAS 713
                         + +L +  + +       A      +     +  R  R      +  
Sbjct: 885  ALGYLLAGDQGLREDSLGSVLQALCDVSDPPATRSVCLDVPAQRVRWRDDRAQPPLHLPP 944

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
             +            F  L +                      R +      AQ    +  
Sbjct: 945  VFQAEFERRWAIGSFSGLVRDLGERGAGAGVPATPHGATDLLRTEQLQEELAQMAQLTQM 1004

Query: 774  EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833
              +          +R       +P +   P     G   H+ +  L ++   +       
Sbjct: 1005 AAQADGQPAAPSGSRAAAIAGSVPTWHGFPRGALPGNFLHDQLQWLAEEGFERAGESGVA 1064

Query: 834  LMK-----------------QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
                                  +         P    +            ++       +
Sbjct: 1065 AALLRRCERAGHAQHAAGAVDWLQQLLATPLPPLGASLAEVDRLLPEMEFWMPSVALRSA 1124

Query: 877  SIEKI-------FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-------- 921
             +++I           PA ++ +  G+ L GFAD +     G   + DYK+         
Sbjct: 1125 ELDRICQQHLLPGQPRPALVSRQLDGL-LMGFADLVFEHG-GRWWVLDYKSNALGATDAD 1182

Query: 922  ---DNPKKETAQKLIDPQLSLEAAAL-----KAGSFSQIDCRKVANLFYIRLKQ-KFKID 972
                   +       + Q ++   AL               R++    Y+ L+  K    
Sbjct: 1183 YTPAALSQAMLAHRYELQAAIYLLALHRLLRSRLGDDYDPARQLGGALYLFLRGFKGPAA 1242

Query: 973  CITNDKKKYSADELSEKSL 991
               +   + +  +  + +L
Sbjct: 1243 GCVHLSAEPAWLDALDAAL 1261


>gi|167823545|ref|ZP_02455016.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei 9]
          Length = 486

 Score = 41.4 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 42/461 (9%), Positives = 101/461 (21%), Gaps = 31/461 (6%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKWEDLHALKNEKYGMWWL------LAADFLKIASKYWTERLVEL-NASSPVGYQIALM 215
             +W          + +          A D     +  W   L EL ++  P  ++    
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 216 RAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
                              + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARAKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----K 386
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPCLAP 381

Query: 387 KKSALITADRNLARRVK-------LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               +   D   A  +               I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
                 +   ++       +     +       L A    +
Sbjct: 442 DVGAPELVEWLRADAVAARYGIDATALETVQTWLAASGARR 482


>gi|148692242|gb|EDL24189.1| spectrin beta 4, isoform CRA_b [Mus musculus]
          Length = 2638

 Score = 41.4 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 84/787 (10%), Positives = 187/787 (23%), Gaps = 66/787 (8%)

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW---TERLVELNASSPV 208
            L+++ +       + E   +L        W L  +  +  ++ W    ERL+E  + S  
Sbjct: 675  LSELQEQAARRRAELEASRSL--------WALLQELEE--AESWARDKERLLEATSGSGG 724

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA--TARLMSTVANHPNGAIVLPGLDCHI 266
                A    +     +      I+ G  G   A     L         G  V PG +   
Sbjct: 725  AAGTAGGAHDLSSTARLLAQHKILQGELGGRRALLQQALRRGEELAAAGGSVGPGAEPLH 784

Query: 267  PT----------AIWNTITEKSTNITSSNTTYSTHPQYS------LAKLLDFLDIKREDV 310
                          W  + E +              Q+       L  L D   +     
Sbjct: 785  LAGLAERAASARRRWQRLEEAAARRERRLQEARALHQFGADLDGLLDWLRDAYRLAAAGD 844

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----DVALIEAD 365
                  S+    R        +      +         +              V ++EA+
Sbjct: 845  FGHDEASSRRLARQHRALTGEVEAHRGPVGGLRRQLATLGGASGAGPLVVALQVRVVEAE 904

Query: 366  NEREEAISIAIALRMSLDE------------NKKKSALITADRNLARRVKLELTR-FGIN 412
                E   +A   R  L +              +          LA RV   L     + 
Sbjct: 905  QLFAEVTEVAALRRQWLRDALAVYRMFGEVHACELWIGEKEQWLLAMRVPDSLDDVEVVQ 964

Query: 413  IDISAGIPLSTTLHSSILT---SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
                +      +L   +L    ++   +   +         +  L         L   + 
Sbjct: 965  HRFESLDQEMNSLMGRVLDVNQTVQELVEGGHPSSDEVRSCQDHLNSRWNRIVELVEQRK 1024

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHI 527
                  L    +  ++ ++++ V ++    ++               +     L      
Sbjct: 1025 EEMSAVLLVENHVLEVAEVRAQVREKRRAVESAPRAGGALQWRLSGLEAALQALEPRQAA 1084

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            L     L+  +    +T  +    +                         +   + L + 
Sbjct: 1085 LLEEAALLAERFPAQATRLHQGAEELGAEWGALAGAAQACGEAVAAAGRLQRFLRDLDTF 1144

Query: 588  FSKIIETGSCIKANAIEWID--------IITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
               ++       A               +       E V  + E  + +           
Sbjct: 1145 LDWLVRAQEAAGAVEGPLPRSLEEADGLLARHAALKEEVDQREEDYARIVAASEALLASE 1204

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA--NGTRHL 697
              +      L+E +       +  L    +    L  A  Y        +       + +
Sbjct: 1205 GAELGPGLALDEWLPHLEVGWHKLLGLWEERREALVQAHVYQLFLRDLCQALAVLRNQEV 1264

Query: 698  IYTRSLRENNIPTIASRW-LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
              + +     + ++       R  +         ++   Q      R+ +   +Q     
Sbjct: 1265 ALSGAELPCTVESVEEAMKRHRDFLTTMELNQQKMQVAVQAAESLLRQGNAYGEQAQEAV 1324

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
             +     +           K L       + R   +LD   H K    R       H + 
Sbjct: 1325 ARLLEKSQENQLRAQQWMQKLLDQLVLQHFLRDCHELDGWIHEKMLMARDGTREDSHKLH 1384

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQ 875
               ++ +        N    + I+   ++     P +    R    +I   + E E   Q
Sbjct: 1385 KRWLRHQAFMAELAQNKEWLEKIEREGQQLMQEKPELAASVRKKLGEIRQCWAELESTTQ 1444

Query: 876  SSIEKIF 882
            +   ++F
Sbjct: 1445 AKARQLF 1451


>gi|194043280|ref|XP_001924987.1| PREDICTED: protein SFI1 homolog [Sus scrofa]
          Length = 1238

 Score = 41.1 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 48/560 (8%), Positives = 115/560 (20%), Gaps = 16/560 (2%)

Query: 232  IAGSTGSIPATARLMSTVANHP---NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
            +A     + A  +L+    +       A  L  L   +  A       +         T 
Sbjct: 540  LAERMAILHAERQLLRRHWSTWCQQAAACCLEQLWQAVARAHHRLERLRKAFCVWRERTQ 599

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                +             R            +  RS    +              +L   
Sbjct: 600  GLRTERMGRSWAARFHSTRLLRWAWTRWREGLALRSAERQQLMRADLHRQHI---LLHRV 656

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
            +   +   S V  +  +    EA      LR +  + ++ +           +      R
Sbjct: 657  LQTWRIHQSHVRSVLQEVAAREAWHRRQRLRAAFRQWRENAVAQADKAKKTSQAAHHYRR 716

Query: 409  -FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
                 +       L     ++ +              A   L +  L  + +     S+ 
Sbjct: 717  TLCFKV-------LMEWREAASVQVYYRQQEDDAVREAQVVLSRGHLRTWFWRWWDHSQR 769

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
                 +   R  ++    + L+++   +             +       + L        
Sbjct: 770  AAWQRVQLERAAQHYRRRLLLQAVAQWKAHHLGCIRKRLLQRQAARLLAQTLCQACFHQW 829

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT--LS 585
             + +      +          + S   K+    L  V     +K       +      L 
Sbjct: 830  RRQLEDRRRERQETARALWFWAFSLQAKVWAAWLGFVLERRRKKARQERAVQAYHQQLLR 889

Query: 586  SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
               ++++   +  KA                  +     ++          R     T  
Sbjct: 890  EGVTRLLRFAAGTKAFRQRLHAQQQVQAAHSLQRTVRRCATLWKQKALGPGRGPQPPTSA 949

Query: 646  LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
            +            +     +     +     A + +  A      A G   L+   + R 
Sbjct: 950  VLSRRVTFEDPPLSSVAAGTGDASLETKRPPAPRGLWGALGSPVSAAGEPQLLELNAARW 1009

Query: 706  NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                     +L               +                 K      P    P   
Sbjct: 1010 ARKQPRCPDFLLEPEASQTPLGGQGPEALWGRDPALVTPFLAKAKAWAALDPSSPLPSAP 1069

Query: 766  QPRTYSFSEIKQLINDPYAV 785
              +          +  P + 
Sbjct: 1070 GLKPPPSVGPGPELLPPSSF 1089


>gi|308050129|ref|YP_003913695.1| chromosome segregation protein SMC [Ferrimonas balearica DSM 9799]
 gi|307632319|gb|ADN76621.1| chromosome segregation protein SMC [Ferrimonas balearica DSM 9799]
          Length = 1152

 Score = 41.1 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 50/502 (9%), Positives = 114/502 (22%), Gaps = 14/502 (2%)

Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
           EEA     AL    D  +   A       +A+     L R    +  SA          +
Sbjct: 371 EEAQEAFDALSDQRDAARDAQAQAQRAAQVAQTELAGLARESQQMATSAQRLAEQLAQWN 430

Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488
                              T ++     +   ++   +A+   E       + + + + L
Sbjct: 431 PQLLESELAQVQEQHDEAQTALEQAELAWHEAQQAREQAEAQRENCRQTLAQLNAEQVRL 490

Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
           ++ +       K                 +    + +     +  +++            
Sbjct: 491 EAQMASLGTLLKARETRLPAPFDHLPRAWQQW-QVDEGWASALEQVLSRPMQAVVGADEA 549

Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI---EW 605
            +             V    H     L   +    L+   + I    S  +A +      
Sbjct: 550 QLPQGAMRMTAETARVPEAAHPWPRLLDKIQSPFNLAPWLNHIYCADSEAQAQSWLQQAG 609

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL--ILGGLNEGVWPKNTAKNPF 663
            ++   L DG  +    E +        L             L GL++       A+   
Sbjct: 610 PEVSVVLADGRWLARGFEAAPGQGSERPLTEIQSELSEAEQRLLGLSDEQHQAEQAEQVA 669

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
           ++ + Q+       ++   Q+        G        +L++        R L       
Sbjct: 670 VTALNQARDAETQRQRAAQQSRETLLTLQGKVE-----NLQQRLEQQRQQRALLEEQQQE 724

Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                + L+ R          L     Q      +     E           +QL  D +
Sbjct: 725 LALRQEELEARQFELESQQEALAEQQAQAEATLVEVEQRSETARGAL---RQRQLERDQH 781

Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
               +++         +       R            +  + +   E         +   
Sbjct: 782 QQRLQQLQLTLQGQQARLQGLAARRSQANEAQAQWQERCELAREEQEALTEPLMEFEESL 841

Query: 844 EKENLPPHIDIIWRHLFHKISH 865
             E     +         +   
Sbjct: 842 ALELEQRALLEAELTERREALE 863


>gi|146308253|ref|YP_001188718.1| UvrD/REP helicase [Pseudomonas mendocina ymp]
 gi|145576454|gb|ABP85986.1| UvrD/REP helicase [Pseudomonas mendocina ymp]
          Length = 628

 Score = 41.1 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 46/407 (11%), Positives = 102/407 (25%), Gaps = 55/407 (13%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITG----------KKSTILPIIKSL--GDVVEEKFTADL 93
            +T+   T  +  ELR     + G             T    + +L   D+   ++   L
Sbjct: 147 RLTVISFTNASCAELRERLQRLLGFWHYPHDARQCVRTFHAAMATLAKEDLGNPRWFEQL 206

Query: 94  LLSYNLNP-PVSNIQRLLELARLILIW---------------RNKLPDIIKDLYPESPLS 137
                    P++  +      RL+                     L     +  P+    
Sbjct: 207 DDPAEEPDNPLTGARLRRAQQRLLRQAYQNAYAEDARFRVLTHRLLKLPAPEEPPQGKAK 266

Query: 138 LPISP------ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
            P+          A+ L + L   ID  E+   + + L  LK    G       + ++  
Sbjct: 267 APLDACKLPGEFAALPLFELLHGQIDFAESLGIRLDRL-DLKTLACGPRERDFIEAMQRF 325

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-----PIIIAGSTGSIPATARLM 246
            ++++  L      S  G    L         K          ++I       P     +
Sbjct: 326 HQHFSALLHSQGLISFNGAFAQLSERLQGAGDKPGPALLALSHLLIDEFQDISPQIVLWL 385

Query: 247 STVAN----HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             V            ++   D       W   + +       +       + +   L   
Sbjct: 386 QAVHRRLHQAGERISLMAIGDDWQSIYGWRGSSPELFIDFDRHFPSRGRGKSTTLLLNTN 445

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                  ++    V  E+  +      +       D     I    + +           
Sbjct: 446 YRSIEPVIRDGEKVLAEVQNKQAKTCVAARAMQPGDHGVRLIQRFDLASGLPRLL----- 500

Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
                 EE  +    +      ++    L++      ++V+ +L + 
Sbjct: 501 ------EEIRAQCAHVASRPGADRTAVLLLSRRNEPLQQVRAQLDKA 541


>gi|111225322|ref|YP_716116.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111152854|emb|CAJ64601.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 1291

 Score = 41.1 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 41/406 (10%), Positives = 95/406 (23%), Gaps = 58/406 (14%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72
            P +   R ++ A+ +     +   +               T+RA  EL      + G ++
Sbjct: 654  PGTGKTRTLVHAIAHRVAERDVPAE--------QCLAVTFTRRAAGELAERLDAMLGARA 705

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
                              A       L       +RL   A++         D ++    
Sbjct: 706  RR--------------VLATTFHGLGLTIVREQHERLARGAQV-----QVADDAVRVELL 746

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
            ++ L           ++  +A++           + L AL   +           L    
Sbjct: 747  DAALHGEGDSRARRRVSAGIAEL-----------KRLRALGQVQRDHD-------LVGVL 788

Query: 193  KYWTERLVELNASSPVGYQIA---LMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMS 247
              +   L E +             L+R+  E +   +     + +     +     RL+ 
Sbjct: 789  ARYDAELRERDMVDLDDLIALPLTLLRSAPELVEHYRARWRHVWVDEYQDTDELQYRLLG 848

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +   P  A +    D       +                   +P      L       R
Sbjct: 849  LL--CPPAANLCVIGDPDQAIYSFRGADVGFFLRFE-----QDYPGAGTVALTRGYRSTR 901

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
              V+   +V             +    +           ++          +        
Sbjct: 902  TIVRAALDVIAPASLVPGRTLTAVRGAEGDGPVLLRRYRSEAEEAIAVVDTIDAALGGTS 961

Query: 368  REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
               A+   +   +    +    A++      A  +   L + G   
Sbjct: 962  F-HALDSGVDGSVEAGLSFADIAVLYRTARQAEPIMEALAKRGFPF 1006


>gi|326328708|ref|ZP_08195047.1| exodeoxyribonuclease V, beta subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325953518|gb|EGD45519.1| exodeoxyribonuclease V, beta subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 529

 Score = 41.1 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 47/500 (9%), Positives = 106/500 (21%), Gaps = 124/500 (24%)

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
            + A    + D   R    E  +     ++ + I+    S+ L +  + L    +     
Sbjct: 6   GLPALLTWFRDERRRSAATERPRRLDSDAAAVQIVTVHGSKGLQYPIVYLPFAYDFFVRD 65

Query: 657 NTAKNPFLSRVMQ------------SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
                   +   +              L     E+   +    +      +  +      
Sbjct: 66  PEVARFHDADGQRTIDVTRTGAQWAQHLARHQDEELGEELRDLYVALTRAQSQVVAWWAP 125

Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL---------DYTTKQPHYK 755
             N  T     L      G T+   + +     Y +    L         + +       
Sbjct: 126 TANTATGGLHRLLFGRQPGVTEVPASQEVFDDAYAERVLGLIEKMGGPTAEPSVVATAVA 185

Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF-------------------- 795
             +P        R ++     +     Y+   R    +                      
Sbjct: 186 SVRPETTGVLAARAFTREVDAEWRRTSYSGLIRVDEGVAPTSEPEVEGTDDEPVADDADL 245

Query: 796 --------------IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
                         +    + P     G+L H ++        +   P++   +      
Sbjct: 246 SPSEVELVETPEEHLSPMAELPKGAGFGSLVHAVLE-----HTDPEAPDLGEELLAKTRE 300

Query: 842 HFEKENLPPHIDIIWRHLFHKISHSF---LEHEEKIQSSIEKIFVNIPAKMAIESIGIH- 897
                 +P   + +   +            +     Q  +      +  ++ +       
Sbjct: 301 QLRWWPVPASAEDLATAILPLNLTPLGPLADGLTLAQIPLRDRLRELDFEIPLAGGDARG 360

Query: 898 ---------------------------------------------LTGFADRIDLLKSGF 912
                                                        L G  D +  L SG 
Sbjct: 361 PGAPDVRLSDLAPLLRAHLPADDPMVTYAGRLEAPPLGEQSLRGYLNGSVDVVLRLPSGR 420

Query: 913 VDITDYKTG---------DNPKKETA--QKLIDPQLSLEAAALKAGSFSQIDCRKV---- 957
             + DYKT            PK   A        Q  L +A +      ++         
Sbjct: 421 FVVVDYKTNFLGVEAMDYTQPKLAEAMLHSHYPLQALLYSAVVHRFLRWRLPGYDPETHL 480

Query: 958 ANLFYIRLKQKFKIDCITND 977
             + Y+ ++     D    D
Sbjct: 481 GGVLYLYVRGMLGPDTPVVD 500


>gi|51894103|ref|YP_076794.1| hypothetical protein STH2967 [Symbiobacterium thermophilum IAM 14863]
 gi|51857792|dbj|BAD41950.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
            14863]
          Length = 296

 Score = 41.1 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 71/278 (25%), Gaps = 47/278 (16%)

Query: 760  FPPLEAQPRTYSFSEIKQLINDPYAVYARRI--LKLDFIPHFKKDPDRTDRGTLFHNIIT 817
              P+    R +S   ++     P     R +  L +  +P   ++     +G  FH +  
Sbjct: 6    AQPIPLHERHFSALALRLYAECPLRFRRRYVDGLAIPGLPDDPEERRAMLQGERFHLMAR 65

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
                                                   R          + +  +    
Sbjct: 66   RYYSGLEPGTLGAPAD-----------------------RAELEDWMQKLVRYLPRRPGY 102

Query: 878  IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT-GDNPKKETAQKLIDPQ 936
                 +     + +    + L    D + +   G   I D+KT    P +   +     Q
Sbjct: 103  AYYPELE----LRLSEPALRLVARFDLVVVAPDGEATIYDWKTLRHMPPRAKLEAAF--Q 156

Query: 937  LSLEAAAL-----KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991
             ++    L             D  +V+ + Y    +  + + +     ++  D       
Sbjct: 157  TTVYRYVLCAAGGAYAPGGAFDPDRVS-MVYWNPLRGGREERLPYSAARFREDG------ 209

Query: 992  KNLIEIVTLLQN-GEQPFISHLRLSEKSNIQSEYDHLA 1028
            + L ++V  +       F        +   + EY  L 
Sbjct: 210  RRLRQLVAQILATPPDGFPPTGDP--RLCARCEYRQLC 245


>gi|116309781|emb|CAH66822.1| OSIGBa0093K19.9 [Oryza sativa Indica Group]
          Length = 1615

 Score = 41.1 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 78/762 (10%), Positives = 165/762 (21%), Gaps = 72/762 (9%)

Query: 27   NGTLVENFRYDPLNPLLLASVTIYVPT--KRAIQELRSEFIEITGK-KSTILPIIKSLGD 83
                +     D   P  +A   +  P   +R    L +      G  +         + D
Sbjct: 876  AEAGLSGSAADGARPTEMAHPELLDPAIDQRHRSYLTAVEGAQLGTFRPRSSRERLLVHD 935

Query: 84   -VVEEKFTADLLLSYNLNPPVSNIQ---RLL-----ELARLILIWRNKLPDIIKDLYPES 134
              VE    A LL    L    +      R        LA L+  WR +           +
Sbjct: 936  SFVERLREAGLLPLARLVEAATGDDDVTRRWDPDRSLLAALVDRWRPETHTFHLPCGEVA 995

Query: 135  PLSLPISPANAIWLAKNL-------ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
            P    +S    + LA +         D  D +       + L  L  E            
Sbjct: 996  PTLQDVSYLLGLPLAGDAVGPVDMGVDWKDELTARFAPVQRLPGLPLEPLQQH-RNTGPT 1054

Query: 188  LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG--SIPATARL 245
             +   ++  ++L E          +                 ++  GS G          
Sbjct: 1055 KRWLLQFTVDQLPEEADEYSFSRCLEAYLLWLFGW-------VMFCGSHGHSVDRGLVHY 1107

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
              ++A+   G +        +  A +  + E     T     +   P +      + + I
Sbjct: 1108 ARSIADAAVGEVPQWSWGSALLAAQYRGLCEAC-TRTDPGAIFGGCPLFISLWAAERIAI 1166

Query: 306  KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
             R  V+     ++    R         P   +                            
Sbjct: 1167 GRPLVEHHPYDASLYENR----PAVDYPTMGTLWC------------------------- 1197

Query: 366  NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
              R +     + +R S  E   +   +     +       LT     + +S         
Sbjct: 1198 --RRQRRWAHVQVRRSYAEFVMEFDRLLPTDVVWEPYSALLTHSRAPLGLSTLCTRDQAY 1255

Query: 426  HSSILTSLLNAIFKLNDFMAIATLV----KHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
              + +  + +   + +    +          P+         + R     +  A      
Sbjct: 1256 WMTTVPMVFDICVEPHAPYRVMRQFGFRQSFPVPFPAGVTAAVHRYSRKGQHSAGHWPAK 1315

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                +D   L  + +      +H            +      V +             + 
Sbjct: 1316 LGPFLDDWLLATEEVVDHAGESHTEEGYEAYLRWYQPRTRTRVTYAPTEQQAHAASARDL 1375

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
             +   +   +         + +      R    +      + LS+         S ++A 
Sbjct: 1376 YARHRDQDFARAAVECNRVVVDATTAIQRLGAGIEVG-ADEHLSTYTRIRDSMRSVLRAL 1434

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                 D+       +             +             ++ G           A  
Sbjct: 1435 TCRAADVAQADAAPQVRPRPTAPRPAAHVPRPTPPPFGGCGVIVTGRCVGLAVYTVLAGR 1494

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
                   +    +  A   +     DF  A              ++    AS     L  
Sbjct: 1495 REFVTAGRHVCCVGLAGCAVLAGRRDFVTAARQ------GPTGTSSEHGWASATHFDLSD 1548

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
                D     +  G   +    +   T            P  
Sbjct: 1549 FDFPDIIGPSQLGGAPPVHTQEQSPSTPLPDPRATRAVPPDR 1590


>gi|296532031|ref|ZP_06894810.1| ATP-dependent DNA helicase PcrA [Roseomonas cervicalis ATCC 49957]
 gi|296267646|gb|EFH13492.1| ATP-dependent DNA helicase PcrA [Roseomonas cervicalis ATCC 49957]
          Length = 634

 Score = 41.1 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 56/539 (10%), Positives = 117/539 (21%), Gaps = 85/539 (15%)

Query: 195 WTERLVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
           + + L    A           +                  I++     +  A  RL+  +
Sbjct: 175 YQQALAARGAVDFDDLIALPVRAMQEDPALAARWASRWSEILVDEYQDTNVAQHRLVQLL 234

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
           A     + V    D       W           +     +  P          L++    
Sbjct: 235 ARPH--SRVFAVGDDTQSIYGWRGAEVAQLRNFNRFYPTAPEPL--------RLEVNYRS 284

Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            +R+   +N +  +     +  L P  +       +     +  +             + 
Sbjct: 285 TRRILLAANAVAAQDRQALRKTLRPAEAQAPAGPPIILSPADTAEEE----------GQA 334

Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429
            A  IA   R S D      A++     LA  +   L + GI                  
Sbjct: 335 AAARIATLRRASPDRPWSDHAVLLRAGFLAEPILAALRQAGIPARQLGER---------- 384

Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
                    + +    I            F +       +     A    K       L 
Sbjct: 385 ---------EPDPPREILAAQAWLRLGLSFRDGEWDATADDAFRRACAYPKRGISG-ALF 434

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
           + + +  A Q             + E++ L   +V         +   +          +
Sbjct: 435 ARLREHAAGQGRALAAAVPDLPATPEERALLEGVVQTAQSIAGDMAKRRPRPADALQLAA 494

Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
                                           +          E      A +      +
Sbjct: 495 ARAGLA-----------------------VGLREAPPALIAAWEAAFAAAAQSPSLPAYL 531

Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
             L  G            + ++    ++ L F  +++ GL EGV+P   A+        +
Sbjct: 532 DALALGTATGDGTAP-DAVLLMTLHRAKGLEFTHVLMPGLEEGVFPHFKAEAQGALAEER 590

Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
                             +      +  L  +   R        SR+L  +        
Sbjct: 591 ---------------RLFYVGLTRAKQSLWLSWVKRRREWNARPSRFLDDIPAQLFHAA 634


>gi|171315689|ref|ZP_02904923.1| alpha-2-macroglobulin domain protein [Burkholderia ambifaria MEX-5]
 gi|171099221|gb|EDT43994.1| alpha-2-macroglobulin domain protein [Burkholderia ambifaria MEX-5]
          Length = 2011

 Score = 41.1 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 55/478 (11%), Positives = 126/478 (26%), Gaps = 18/478 (3%)

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
            G+             ++     T  +   D+    +       ++VA +    E+    +
Sbjct: 1371 GDAFRAQVTLRNTTDRAMQVVVTPRVTGLDVAPQTVSLAANAATEVAWMITAPEQALDAA 1430

Query: 374  IAIALR-MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
             A+  R  + ++  K++A       +A++V   L        ++      T   S+   +
Sbjct: 1431 GALNWRIEAAEQGGKRAA---DALAVAQKVVPALPATVQQATLTQVDGTLTVPVSAPAGA 1487

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            + NA       +A++   K      G    +       LE    R     +D    ++LV
Sbjct: 1488 VNNAQGMPRGGIAVSLQSKLADGLPGVRRWFERYPYRCLEQQTSRA-IGLHDAAQWQALV 1546

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                    ++    ++     +       L    ++                     +  
Sbjct: 1547 ARMPVYLDSDGLASYFPPSSDDAHYGSPTLSSYLLVVADEASRLDPRFALPEDLRTQLEA 1606

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI-----D 607
                 +           R+  +L      + LS   +        I+    +W      D
Sbjct: 1607 GLARFIDGRIERNAWAPRQDRDLRKLAAIEALSRYGAAQGRMLGSIEIAPNQWPTSAVID 1666

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                L   + +  + EK + +  +            +     ++ +W   T+     +R+
Sbjct: 1667 YHAILARVKDIPQRDEKRAQVEQILRARLTYQGTQLVFSTARDDDLWWLMTSNETNAARL 1726

Query: 668  MQSDLNLKTA-EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
                       ++     A    +         T +          SR  + + V G T 
Sbjct: 1727 ALEFAGDPAWKDEMPRVTAGLLALQRQGAWQTTTSNALGQLAVERFSRTYESVPVAGTTK 1786

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP-------KPFPPLEAQPRTYSFSEIKQ 777
                  +R   +       D         R         P+P     P T S ++   
Sbjct: 1787 IALGGNERAIPWSQAPVPADAPASATAATRAAAARSVLMPWPRASQAPATLSVTQDGT 1844


>gi|293355776|ref|XP_218364.5| PREDICTED: spectrin, beta, non-erythrocytic 4 [Rattus norvegicus]
          Length = 2538

 Score = 41.1 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 84/787 (10%), Positives = 187/787 (23%), Gaps = 66/787 (8%)

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW---TERLVELNASSPV 208
            L+++ +       + E   +L        W L  +  +  ++ W    ERL+E  + S  
Sbjct: 604  LSELQEQAARRRAELEASRSL--------WALLQELEE--AESWARDKERLLEATSGSGG 653

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA--TARLMSTVANHPNGAIVLPGLDCHI 266
                A    +     +      I+ G  G   A     L         G  V PG +   
Sbjct: 654  AAGTAGGAHDLSSTARLLAQHKILQGELGGRRALLQQALRRGEELAAAGGSVGPGAEPLH 713

Query: 267  PT----------AIWNTITEKSTNITSSNTTYSTHPQYS------LAKLLDFLDIKREDV 310
                          W  + E +              Q+       L  L D   +     
Sbjct: 714  LAGLAERAASARRRWQRLEEAAARRERRLQEARALHQFGADLDGLLDWLRDAYRLAAAGD 773

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----DVALIEAD 365
                  S+    R        +      +         +              V ++EA+
Sbjct: 774  FGHDEASSRRLARQHRALTGEVEAHRGPVGGLRRQLATLGGASGAGPLVVALQVRVVEAE 833

Query: 366  NEREEAISIAIALRMSLDE------------NKKKSALITADRNLARRVKLELTR-FGIN 412
                E   +A   R  L +              +          LA RV   L     + 
Sbjct: 834  QLFAEVTEVAALRRQWLRDALAVYRMFGEVHACELWIGEKEQWLLAMRVPDSLDDVEVVQ 893

Query: 413  IDISAGIPLSTTLHSSILT---SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
                +      +L   +L    ++   +   +         +  L         L   + 
Sbjct: 894  HRFESLDQEMNSLMGRVLDVNQTVQELVEGGHPSSDEVRSCQDHLNSRWNRIVELVEQRK 953

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHI 527
                  L    +  ++ ++++ V ++    ++               +     L      
Sbjct: 954  EEMSAVLLVENHVLEVAEVRAQVREKRRAVESAPRAGGALQWRLSGLEAALQALEPRQAA 1013

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            L     L+  +    +T  +    +                         +   + L + 
Sbjct: 1014 LLEEAALLAERFPAQATRLHQGAEELGAEWGALAGAAQACGEAVAAAGRLQRFLRDLDTF 1073

Query: 588  FSKIIETGSCIKANAIEWID--------IITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
               ++       A               +       E V  + E  + +           
Sbjct: 1074 LDWLVRAQEAAGAVEGPLPRSLEEADGLLARHAALKEEVDQREEDYARIVAASEALLASD 1133

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA--NGTRHL 697
              +      L+E +       +  L    +    L  A  Y        +       + +
Sbjct: 1134 GAELGPGLALDEWLPHLEVGWHKLLGLWEERREALVQAHVYQLFLRDLCQALAVLRNQEV 1193

Query: 698  IYTRSLRENNIPTIASRW-LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
              + +     + ++       R  +         ++   Q      R+ +   +Q     
Sbjct: 1194 ALSGAELPCTVESVEEAMKRHRDFLTTMELNQQKMQVAVQAAEGLLRQGNAYGEQAQEAV 1253

Query: 757  PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
             +     +           K L       + R   +LD   H K    R       H + 
Sbjct: 1254 ARLLEKSQENQLRAQQWMQKLLDQLVLQHFLRDCHELDGWIHEKMLMARDGTREDSHKLH 1313

Query: 817  TELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQ 875
               ++ +        N    + I+   ++     P +    R    +I   + E E   Q
Sbjct: 1314 KRWLRHQAFMAELAQNKEWLEKIEREGQQLMQEKPELAASVRKKLGEIRQCWAELESTTQ 1373

Query: 876  SSIEKIF 882
            +   ++F
Sbjct: 1374 AKARQLF 1380


>gi|254198374|ref|ZP_04904796.1| non-ribosomal peptide synthase [Burkholderia pseudomallei S13]
 gi|169655115|gb|EDS87808.1| non-ribosomal peptide synthase [Burkholderia pseudomallei S13]
          Length = 2979

 Score = 41.1 bits (94), Expect = 1.00,   Method: Composition-based stats.
 Identities = 57/705 (8%), Positives = 148/705 (20%), Gaps = 54/705 (7%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
              R   L A +P       + A  + +++     +           +   +   A     
Sbjct: 1085 PARDAALGAVAPRNDTQRALCAIWQAVLRVPALGVT-DNFFAVGGDSILSIQAAARAREQ 1143

Query: 256  AIVLPGLD---CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
             IV    D         +   +  +     +   +    P   +      +D    D   
Sbjct: 1144 GIVFSARDIFRHQTVELLAAHVRWQQAPDEARRASAGDMPLLPIHHWFFEVDSTHVDHYH 1203

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
               + +   G   V  +++L    +      +     P   +        EA +    A 
Sbjct: 1204 QSRLLDVPAGVDAVFVRAWLAALVARHDALRLRLRDTPAGWRA----HFAEAPHADASAR 1259

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
             +   +  +   +        A        +  +      + ++A +    T    +L  
Sbjct: 1260 LMVCDVAWAGAPD-------AALDAFFADARRGVRLADGPLFVAALVAAGATGRGRLLLI 1312

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
              +A+     +  I   ++   A++           +       R    + D   L +  
Sbjct: 1313 GHHAVVDGVSWRVIVADLRRTFAQWPALRPDAPGPASDAYQAWARALVAAADSPALHAER 1372

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
               +   +              +    A  +    L              +         
Sbjct: 1373 AHWLRVLRAPAPALRLDRAAGGDATRRATRIGAVSLNAADTRALLADTHRAYRTQTIELL 1432

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
               L +   +    D  R        E          + +            +      L
Sbjct: 1433 LAGLLLAFRRWQGHDALRIALEGHGREADALAHYGAERGLPDVGETVGWFTSYYPQWLTL 1492

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                +       S    I+             I  G+   V           +   +   
Sbjct: 1493 AGAASAPAPAADSVAAAIMAVKTQYRATPRHGIGYGILRYVAGDPELAAEAAAHAPEIVF 1552

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN-----NIPTIASRWLQRLLVLGGTDF 727
            N           A    + + +       +         +           +   G    
Sbjct: 1553 NYLGQFDVANDEAAGIAVLDLSSRDDIAAARPREHALGIDGGVKDGCLAFEIDYSGAAFD 1612

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
             +++   G  ++   R++    K     RP P     A                      
Sbjct: 1613 DESIAAFGAHFMHALREIAAHCKACAAWRPTPEDFPLAAVTQAELDAWHA---------- 1662

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                                     H  +  L      +     + L+ +   ++  + +
Sbjct: 1663 ------------------------RHPSLETLYPATAIQRGMVFHSLLPKQASAYTNQVH 1698

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                              + LE    ++++        P ++ + 
Sbjct: 1699 ARVGGGTFDAARLRHAWQTVLERHAALRTAFVGFEREQPLQIVLA 1743


>gi|167737947|ref|ZP_02410721.1| exodeoxyribonuclease V, gamma subunit [Burkholderia pseudomallei
           14]
          Length = 493

 Score = 41.1 bits (94), Expect = 1.00,   Method: Composition-based stats.
 Identities = 39/461 (8%), Positives = 99/461 (21%), Gaps = 31/461 (6%)

Query: 43  LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102
             A+  + VP+    + L  +  +  G  + +     +       ++    +      P 
Sbjct: 30  PWAAQQVIVPSAALRRRLELDLAKRHGVCANVRFSYLA-------QWLWAQIGEVLTVPA 82

Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            S       + R   +  +      +     +             LA  +A + D   T 
Sbjct: 83  HSPFAPDRLVWRCYRLLSDHGAAPWRASPRLAAYLAAADAPMRHELAHRIATVFDHYLTY 142

Query: 163 EKKW-------EDLHAL--KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             +W       E + AL       G        +     +     L +        +   
Sbjct: 143 RPEWLAQWQDGESIFALEGAPRHGGEAARDDEAWQAALWRALLAELSDSGMPPAHRFLRE 202

Query: 214 LMRAEAEHLMKGT---KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
               + + + +        + +       P    L+  ++   +  I            I
Sbjct: 203 ARAFDPDVIARARVKWPDAVSVFALPTMPPLHIALLRELSRWIDVRIYALNPCREFWFDI 262

Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
                 +S +               LA+       +   +  L   +          + +
Sbjct: 263 VTAARAESLDAADRLDYQEVGHP-LLAEWGRQTQAQLHMLHELTESAAASDASRYADNPA 321

Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--- 387
                       D+              V +    +   +   +   L    D +     
Sbjct: 322 PTWLARVQNAILDLQPEAALGEPPAERGVEVHVCHSLARQLEVLHDRLLAWFDADPSLAP 381

Query: 388 --------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
                     A      +             I   I+   P      + +L   L    +
Sbjct: 382 SDVLVAMPDLATAGPLIDAVFGTPAGADAARIPYRITGLPPSQANPVARVLLDWLALPER 441

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
                 +   ++       +     +       L A    +
Sbjct: 442 DVGAPELVEWLRADAVAARYGIDATALETVQTWLAASGARR 482


>gi|253741571|gb|EES98439.1| Axoneme-associated protein GASP-180 [Giardia intestinalis ATCC 50581]
          Length = 2119

 Score = 41.1 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 53/643 (8%), Positives = 150/643 (23%), Gaps = 34/643 (5%)

Query: 83   DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142
            +  E+     +    +       +Q+ L   R             ++          +  
Sbjct: 1077 EAREKALAEAIDGLADHGDAAQQLQQELAALRQNAAESAAALREAREQAAAHQEDARLKA 1136

Query: 143  ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
            A    L+  LA + +    +  +  D   L +    +     A   ++A        +E 
Sbjct: 1137 AQLEDLSGELARLREQAAEDAARARDAEELADRVAELEAQAKAADERLADARAKIAELEA 1196

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
             A++                  G +    +     +  A         +           
Sbjct: 1197 RAATDTEALAKAAEKFHATAQGGDEAVQRLEAEVCAAEAERDEARAALDKALDEAAALEA 1256

Query: 263  DCHIPTAIWNTITEKSTNITSSNTTYSTHPQY---SLAKLLDFLDIKREDVKRLGNVSNE 319
            +     A  + +  +      +  T           ++ L + L    +   +L +    
Sbjct: 1257 EHKNLEAERDALAAQLAEAQDALQTARDQLAAAEDRVSALTENLGAMNDAKAQLRDSEEA 1316

Query: 320  ------MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE---------- 363
                  +  R                   + L +             ++E          
Sbjct: 1317 IRDKDTLAQRQADEISELRRELQEAYDKINSLSHLEQQASDSKERAQMLEDYVTELRSKQ 1376

Query: 364  --ADNEREEAISIAIALRMSLDENKKKSAL--ITADRNLARRVKLELTRFGINIDISAGI 419
              A  +  E  ++   L    DE  +K+    +  +     R K +     +      G 
Sbjct: 1377 IDAGMQETELGALRKELEQKQDELGEKTVALDLLREEADKLREKADSRERELQQLRDQGN 1436

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
              +      +     +    L+        +   L++     +       ALE  A    
Sbjct: 1437 EDAAERIVQLEAERDDLHATLDAKDKEIGQLTDELSRTTASVEAARTRIQALEDEAATRA 1496

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
            + + +     + + +R+   +N       +++   E+       +D +        +   
Sbjct: 1497 EKAEESAARTAGLRNRVEELENALQSLGREAQARAEEVRDRERRLDAMDIKRGAADSALE 1556

Query: 540  NKNSTCGNLS---------ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
            +  +    L          +    K     +  +                 +  ++  + 
Sbjct: 1557 DAQNRIRLLEDENAALTDKLEAREKALAEAIDGLADHGDAAQQLQQELAALRQNAAESAA 1616

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
             +       A   E   +    ++  + +    +                 D +      
Sbjct: 1617 ALREAREQAAAHQEDARLKAAQLEDLSGELARLREQAAEDAARARDAEELADRVAELEAQ 1676

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
                 +  A        +++     T  + + +AA  F     
Sbjct: 1677 AKAADERLADARAKIAELEARAATDT--EALAKAAEKFHATAQ 1717


>gi|254776581|ref|ZP_05218097.1| ATP-dependent DNA helicase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 703

 Score = 41.1 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 44/429 (10%), Positives = 98/429 (22%), Gaps = 44/429 (10%)

Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
           ++LA  I+  +      E+  A          L AA         +       +  + + 
Sbjct: 145 RDLAGEIEWAKASLIGPEEYPAAVAAAGRDIPLDAARVAG-VYAAYEALKARGDHVTLLD 203

Query: 210 YQIALMRAEAEHLMKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
           +   L+   A                   ++       P   R+++      +   V+  
Sbjct: 204 FDDLLLHTAAAIENDPAVAEEFRDRYRCFVVDEYQDVTPLQQRVLAAWLGDRDDLTVV-- 261

Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            D +     +   + +     S        P  ++ +L        + V     V     
Sbjct: 262 GDANQTIYSFTGASPRFLLDFSRRF-----PDATVVRLERDYRSTPQVVSLANQVIAAAR 316

Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
           GR               +                       E  +E  EA ++A ++   
Sbjct: 317 GRVAGSKL--------HLVGQRPPGPVP----------TFHEHPDEPAEAAAVAKSIARL 358

Query: 382 LD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
           ++      + A++      +   +  LT  GI   +  G                    +
Sbjct: 359 IESGTPASEIAVLYRVNAQSEIYEEALTEVGIPYQVRGGEGFFNRQEIKQAL----LALQ 414

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                      + PL                  +    G +       L++L        
Sbjct: 415 RAAEREGEGAREEPLPAVVRAVLEPLGLTADEPV----GTRARERWEALRALAELVDDEV 470

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                +           +  A          +  L   K  +      + ++D T     
Sbjct: 471 ARRPQLDFAGLLTELRMRADARHPPVVQGVALASLHAAKGLEWDAVFLVGLADGTLPISH 530

Query: 560 CLQNVCLDE 568
            L +    E
Sbjct: 531 ALAHGADSE 539


>gi|329939653|ref|ZP_08288954.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329301223|gb|EGG45118.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 742

 Score = 41.1 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 75/313 (23%), Gaps = 20/313 (6%)

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
               +T     L + L +  +         LV    A         +   +  E  A   
Sbjct: 297 RDYRSTPQVVHLANGLLSQARGRAADHRLELVSQRPAGPEPSYADYADEPSEAEGAARHI 356

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH--ILQCITPLVT 536
                  +    + +      ++ T+               A    D   + + I  L  
Sbjct: 357 RALLDSGVPAAEIAILFRTNSQSETYEQALADAGIPYQLRGAERFFDRPEVRRAIHALRA 416

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                 +      + D        L            +    E  ++L++L         
Sbjct: 417 AARFGGNDSRLDDVVDLPSQVRAVLSGEGWAGEPPAGSGAVRERWESLAALVHL---AQD 473

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
                A   +  +   +D             + +     ++ L +D + L G+ EG+ P 
Sbjct: 474 FATVRADVTLGDLITELDERAGAQHAPTVQGVTLASLHSAKGLEWDVVFLVGVAEGMMPI 533

Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
           + A+               T E+   +    +      R  ++       +     SR  
Sbjct: 534 SYAR---------------TDEQIEEERRLLYVGVTRARERLFVSWALSRSPGGRPSRRP 578

Query: 717 QRLLVLGGTDFFD 729
            R L         
Sbjct: 579 SRFLDGLRPGSTA 591


>gi|207723136|ref|YP_002253535.1| homologous recombinational repair protein (partial sequence n
           terminus) [Ralstonia solanacearum MolK2]
 gi|206588329|emb|CAQ35292.1| probable homologous recombinational repair protein (partial
           sequence n terminus) [Ralstonia solanacearum MolK2]
          Length = 244

 Score = 41.1 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 60/211 (28%), Gaps = 25/211 (11%)

Query: 10  TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEI 67
             AP   F      A           +D        +  + VPT   I  +R        
Sbjct: 5   AFAPGPAFLPHAADA-------AWRFFDAHAAQAPGAGVVVVPTAAQIPGVRGALHASAQ 57

Query: 68  TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
            G    +LP I +LG      +  DL     L    S + RLL + + +           
Sbjct: 58  AGGVPRLLPRILTLG-----HWLLDLPPEPGLPAARSPLSRLLAVQQALKT--------- 103

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
                          A    +A+ L  + D +       +   +  + ++ +     +  
Sbjct: 104 --QAWLREALGAQDDAALWGVAQVLVTVSDELSQRWLTLDAADSETDGRHDVLEAALSAA 161

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAE 218
           L+      +ER +    +       A +RA 
Sbjct: 162 LEHTYAQLSERFLGDRVAHRADILAAAVRAH 192


>gi|74000235|ref|XP_544637.2| PREDICTED: similar to Spectrin beta chain, brain 4 (Spectrin,
            non-erythroid beta chain 4) (Beta-V spectrin) (BSPECV)
            [Canis familiaris]
          Length = 3612

 Score = 41.1 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 64/627 (10%), Positives = 151/627 (24%), Gaps = 36/627 (5%)

Query: 259  LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY-SLAKLLDFLDIKREDVKRLGNVS 317
            L            N   ++   +         HP   ++ + L  L    ++++      
Sbjct: 2633 LWKQQSLQAELDANVHEQQRLQMEGQRLLQEGHPASETIQERLRELGELWDELQANSR-R 2691

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
                 +    +              + +E K+ +     +   L E    + E  +    
Sbjct: 2692 KAAALQEACKALRLRRSVEDLESWLEPVEVKLRDPIGDQAQPELDELMGAQGELEAAVDR 2751

Query: 378  LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
                      ++ +IT +     +   +  R  +        PL     +     L    
Sbjct: 2752 QAGQAQLLLGQAQVITGEGRCLAQDVEDQARRLLQRLEDLRAPLRERRAALEARRLALQF 2811

Query: 438  FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
            F+  D        K PLA           +   L+       +       L   V+D   
Sbjct: 2812 FRDADEELAWVQEKLPLA-TARDCGQSLISVRRLQEKHQNLERELSSHEALAQAVVDAGR 2870

Query: 498  TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                        +  +++ ++    L     Q    L   +  +      L    W +  
Sbjct: 2871 RLV-EAGAGRAVAARAQQLEDAVGCLRAEAAQRRRRLQQAQEAQQFLTELLEAESWLQQQ 2929

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII--TRLIDG 615
               L                 +  +   +   ++  T   ++A       +     L+ G
Sbjct: 2930 GCALHTQDGA-----------QSAEAARASLRRLEATRRLLEAFGPRLERLQQGAALLQG 2978

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
              +    +  + L  +G   S LL        G  E +      +   L     +     
Sbjct: 2979 GQLPGSAQVLARLRAVGEAHSGLLRTAEGRARGWREQLQLHRAEREARLLETWLAGKVAA 3038

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
               +  GQ     EM                     A R L   L      +   ++ + 
Sbjct: 3039 AESQDHGQDLEAVEMLEKKFEAFRKEVQSLGPAKVEALRELAGSLERTAHKYNPQIQAQR 3098

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                    +LD   K    +        E +    + + ++  + +   + AR +     
Sbjct: 3099 SRIEATWERLDRAIK---ARTQSLATAREVRGFEQTVAWLQSWMQEKATLMARDVCGHSP 3155

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
                  +          H  +              +   + ++         L P     
Sbjct: 3156 SSVQTFEQQ--------HRCLER--------ELAAMEKEVARVRMEACRLGQLHPMAQDG 3199

Query: 856  WRHLFHKISHSFLEHEEKIQSSIEKIF 882
                  ++  ++   E K +   +++ 
Sbjct: 3200 LSEQLARVEEAWATLEVKAREQGQQLE 3226


>gi|161525769|ref|YP_001580781.1| beta-ketoacyl synthase [Burkholderia multivorans ATCC 17616]
 gi|189349509|ref|YP_001945137.1| polyketide synthase [Burkholderia multivorans ATCC 17616]
 gi|160343198|gb|ABX16284.1| Beta-ketoacyl synthase [Burkholderia multivorans ATCC 17616]
 gi|189333531|dbj|BAG42601.1| polyketide synthase [Burkholderia multivorans ATCC 17616]
          Length = 2543

 Score = 41.1 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 63/722 (8%), Positives = 161/722 (22%), Gaps = 50/722 (6%)

Query: 159  IETEEKKWEDLHALKNEKYGMWWL----LAADFLKIASKYWTERLVELNASSPVGYQIAL 214
            +  +  +   +      +    W       AD + +      ++ +           +  
Sbjct: 608  LAAQGVQPTAVTGHSVGEVAAAWACGALTLADAITVIYHRSQQQGLTKGKGRMAAVGMDG 667

Query: 215  MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
              A A     G +  + +AG   +  AT  L   V      A VL               
Sbjct: 668  AAAAALLDELGLQHALCVAGYNSTKGAT--LAGAVDALEKVAHVLA---------ERRVF 716

Query: 275  TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
             ++     + +++     +  L + L  +  +R DV     V   +   + + +  +   
Sbjct: 717  YKQLDLDYAFHSSAMDPIEAPLKQALAHIRPRRGDVPFFSTVEGAVLDGAALDADYWWRN 776

Query: 335  DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
                +R    L++ +         + +  A   R         +     +          
Sbjct: 777  IRVPVRFEQALDSLVSQGSDVL--IEIGPAPVLRGYVNE----MLKHHGKTGVCIPTGRR 830

Query: 395  DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
            + +    V+  + +  I+           T  + I         +            HP+
Sbjct: 831  NDDAPAHVQAAVAQTIISGAPIDWAHFFPTGAARIELPPYAWQRERY---------WHPV 881

Query: 455  AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                  +    R  + L    +           L +L+   +A            S  +E
Sbjct: 882  TAESLNQLG-RRRVHPLLGYKMSQQTQPAWENQLDTLLQPWLADHVVGHATVFPGSGFAE 940

Query: 515  EDKELAVLLVDHILQCITPLVTYKTNKNSTC----GNLSISDWTKLTVTCLQNVCLDEHR 570
                 A+         I  L  +     S        LS+ D         + V   +  
Sbjct: 941  IALAAALQWYPGDYADIEELEIHAPLLLSAAPSKITRLSLDDSDGRFRLRSKQVGSTDPW 1000

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
             +        G        +        + +      +           P          
Sbjct: 1001 TVHASGRLLSGAN-PQQLIETAPALPAREPDFTGETHLALTRAAELDYGPA--------- 1050

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
               +    L     ++  L+       +  +  L   +         +      +    +
Sbjct: 1051 FQAVSHGWLESPRDVVAVLHAPAALAASLPHSLLHPALLDCTFQLIIQMLKDDPSLGQGV 1110

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            A     +   R       P      L +      T  F    + GQ     +     + +
Sbjct: 1111 AFVPTRIGRLRWRAGLGTPHRVRARLLKRAPHSLTAEFALFDEHGQQIAAISEARFRSVR 1170

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                              +     ++Q          +  L+                  
Sbjct: 1171 LSKSHAEPLAFLDYVAIPSPHPQHLQQANPALRRDALQPALRAMVRSIVTDGLLER-YAQ 1229

Query: 811  LFHNIITELIKKRINKNTPEINH--LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
                ++  L  +        ++    ++  + +            + W     + +    
Sbjct: 1230 EVDPLLETLCDRYAADALLTLSTNGRLEASVLTACRDAAPHAAPLLDWL--LARTARRLA 1287

Query: 869  EH 870
            + 
Sbjct: 1288 DS 1289


>gi|161525258|ref|YP_001580270.1| exodeoxyribonuclease V subunit beta [Burkholderia multivorans ATCC
            17616]
 gi|189350004|ref|YP_001945632.1| exodeoxyribonuclease V subunit beta [Burkholderia multivorans ATCC
            17616]
 gi|160342687|gb|ABX15773.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans ATCC
            17616]
 gi|189334026|dbj|BAG43096.1| exodeoxyribonuclease V beta subunit [Burkholderia multivorans ATCC
            17616]
          Length = 1236

 Score = 41.1 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 87/903 (9%), Positives = 195/903 (21%), Gaps = 92/903 (10%)

Query: 180  WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAG 234
            W  L A++L  A     ER       S       L  A   H      ++      +I  
Sbjct: 339  WLALIAEWLDTAPAELAERKRTRRVVSFDDLLANLYHALHAHPWLADTLRARYPAALIDE 398

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
               + P    +   +        +    D       +      +     +  +       
Sbjct: 399  FQDTDPLQFAIFDRIFAPAG--PLFLVGDPKQAIYSFRAADLHTYLAARARASACYTLAV 456

Query: 295  SLAKLLDFLDIKREDVKRLGNV-----------SNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +       ++      +                      R+    ++   P         
Sbjct: 457  NQRSTPAIVEACNRFFQSNPRAFVLDGLDYYPVRAGTRTRAPFADETDPAPSGDFRIWML 516

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--KKKSALITADRNLARR 401
               +     +   +  A   A                  +        A++         
Sbjct: 517  PGGDGTLLKRDAHAQAAQACAAEIARLMRGARDGHARLGETPLSPGDIAVLVQTHRQGSL 576

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
            VK  L  +GI     A   + +T+ +  L  +L AI    D   +   +           
Sbjct: 577  VKRVLAAWGIGSVELAQASVFSTIDAEQLERVLAAIDAPGDLRRLRAALASDWFGLDAGA 636

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN---------NTHVPHWQSRL 512
             +     +A           +  +  ++     R+  ++             +   +  +
Sbjct: 637  LWRMEQGDADAQHDAGATDTADAMSWVERFSRYRLLWRERGFAVMWRTFARELRIAERLM 696

Query: 513  SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572
            +  D E  V  ++H+ +      + +     T   L+              +  D +   
Sbjct: 697  AGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGGGEEAQLRLESDRNLVQ 756

Query: 573  PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT----RLIDGETVKPKIEKSSTL 628
                 + +G   + +F   +  G   +  A    D                   E ++  
Sbjct: 757  IVTVHKSKGLEYAIVFCPFLNDGGLREPPASALPDAREYHDEAGDAVLHYGCDDEAAAHA 816

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
                  E        + +            A     SR  +            G      
Sbjct: 817  ARQALREQAAERARLVYVALTRAVYRCYLVAGPYLSSRSTREARRSVLNWLVAGAGRSFD 876

Query: 689  EMANGTRHLIYTRSLRENNIPTIAS-----RWLQRLLVLGGTDFFDNLKKRGQC---YLD 740
               +         +          S        +R  +L G D    L  R         
Sbjct: 877  AWLDEPPDDAELDAAWRALAGGPISVAPLPAPARRERLLAGHDVSQTLAARHATCVLRDA 936

Query: 741  WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800
            W      +      +       +           +  L+       A  +          
Sbjct: 937  WRMASFSSLTASIAREEAGVAAVPDDELRPDHDALAALVPGADIDAAATVAPEPPDDDIL 996

Query: 801  KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
              P     G   H +                   +              P +      + 
Sbjct: 997  VFPRGAAAGECLHRLFELSRFAEPASWPAAARGALHD------RPVEAEPALAERLPAMM 1050

Query: 861  HKISHSFLEHEE---KIQSSIEKIFV--NIPA----------------------KMAIES 893
             ++    +  E       + ++       +                         +A+++
Sbjct: 1051 VRLVDDVVHTELVPGLRLADLDPAKRLNEMGFLFPAPSLDLGALRRLLVAHGYPDVALDA 1110

Query: 894  IGIH--LTGFADRIDLLKSGFVDITDYKT---GDNP--------KKETAQKLIDPQLSLE 940
              +   + GF D I     G   I D+K+   G  P            A      Q  L 
Sbjct: 1111 GTLAGFIKGFIDMIVEH-DGRFWIVDWKSNHLGTTPDAYGPQALDAAMADHAYHLQALLY 1169

Query: 941  AAALKAGSFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996
              AL     +++      R +A   Y+ ++                A   + + +  L  
Sbjct: 1170 TVALHRYLRTRLAGYDYDRHIAGYLYLFVRGVRPAWRSGGAPAGVHARRPARELVDALDR 1229

Query: 997  IVT 999
            ++ 
Sbjct: 1230 MME 1232


>gi|58428491|gb|AAW77528.1| glutamine synthetase adenylyltransferase [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 1000

 Score = 41.1 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 66/605 (10%), Positives = 134/605 (22%), Gaps = 28/605 (4%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           ARL       L +   + +             A  +A + A +    + E + WE    L
Sbjct: 259 ARLGQQLARLLDEATAEGFSHRVDLRLRPFGTAGRVALSFAGMDQYFQREGRDWERYAWL 318

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH----------- 221
           K             +L+    +   R ++  A   +    A + AE              
Sbjct: 319 KARAVAGAIDAGEAWLETLRPFVYRRYLDFTALDGLREMKAAITAEVARHDCLDDIKRGP 378

Query: 222 -----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                +    +   +I G         RL+  +        +       + TA       
Sbjct: 379 GGIREIEFLAQSLQLIRGGREPSLRERRLLPALRALVTAGQIDQENGQALTTAYRFLRRL 438

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +      PQ  L +    L +   +   L +       R        L P  
Sbjct: 439 ENRLQMLRDAQTHALPQAPLDRERIALGLGYAEWATLLDALAPQRARVTAEFAELLAPRV 498

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                  + +          + +A +   +      ++A     S       SA      
Sbjct: 499 RATAPDTLADYWRALPAGDAAPLAGMGLSDPGGAHQALADFAHSSGVRGLSDSA----RA 554

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L R +   L          A +P    L  + L              A+A LV      
Sbjct: 555 RLDRVMPALLHAATRASQPDAAVPRMLGLLQATLRRTSYLSLLDEQPSALARLVDVLSRS 614

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
               E+  +      EL+  R +    D   L +   D +        +     R     
Sbjct: 615 ALLAERLAAYPLLLDELLDTRISGPLPDRAALHAACADIVHIDDTEAALRELNERRLARS 674

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT--------CLQNVCLDE 568
             +A+  +D   Q +           +    +      ++                    
Sbjct: 675 FRIALATLDGRQQAVESTRQLAWLAEAVVQTVLHLARIEMVAAHGYVSGGSFAIIGYGSL 734

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                    + +   L     ++  +       A  W   + + +               
Sbjct: 735 GGMELGFGSDLDLVFLYDHPPEVDASDGKRPLEAGRWFARLAQKVMALLAAETGAGRLYD 794

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +              L    E    +            ++            Q     
Sbjct: 795 IDVRLRPDGGKAALVSSLASYREYQRERAWTWEHQALVRARAVAGDAVLCDAFAQVRRYT 854

Query: 689 EMANG 693
            M   
Sbjct: 855 LMRVR 859


>gi|170785382|gb|ACB37741.1| putative type I polyketide synthase [Micromonospora chalcea]
          Length = 7007

 Score = 41.1 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 45/444 (10%), Positives = 95/444 (21%), Gaps = 35/444 (7%)

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
              ++ L   L+A  +          ++HPL         L  A             +S  
Sbjct: 2660 PGTAFLDLALHAAERRGSTHVEELTLEHPLVLPDSGALRLHVATAPEPDGRHTVTVHSRP 2719

Query: 485  IMDLKS-LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY-KTNKN 542
              D         + T   + H        +        + +D     +  L         
Sbjct: 2720 AGDPDHPWTRHAVGTISGDAHGTPAVLDGAWPPPGAQPVRLDQFYGDLADLGYLYGPTFR 2779

Query: 543  STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                     D     V   +    D     P L   +     +++   +    + ++   
Sbjct: 2780 GLRAAWQAGDAFYAEVELPEQAAPDGFTVHPAL--LDAALHTTAVGVNLDPAHTPVRLPF 2837

Query: 603  IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
                  +                 T   L   +       T+    L E    +  A +P
Sbjct: 2838 SWSDVTLHATGATRLRVRTTRVDDTTVALDMADGTGRPVLTVARLRLRELDPGQLAAPSP 2897

Query: 663  FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
              + + ++D                             R+          S W     + 
Sbjct: 2898 LHNSIFRTDW---------------------------VRAETPPVPAGDLSHWAVLGDLD 2930

Query: 723  GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN-- 780
             G D       R     D  R+LD     P           +      +    +      
Sbjct: 2931 AGADPAFAGLPRHPELADLARELDAGAAAPGVVLLACHSGPDDAGTDPAARAHEVTRRVL 2990

Query: 781  -DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI-ITELIKKRINKNTPEINHLMKQI 838
                   A   L    +    +       G    ++  + +          E +  +   
Sbjct: 2991 GTVQGWLADPRLAGSRLIVLTRGAIAARPGDEVRDLPGSTVWGLLRAAWWEEPDRFVLAD 3050

Query: 839  IDSHFEKENLPPHIDIIWRHLFHK 862
            +D     E+L   +      +  +
Sbjct: 3051 LDDAATPESLRAALATDSYQVVLR 3074


>gi|56476299|ref|YP_157888.1| hypothetical protein ebA1578 [Aromatoleum aromaticum EbN1]
 gi|56312342|emb|CAI06987.1| weakly similar to some putative glycosyltransferases [Aromatoleum
           aromaticum EbN1]
          Length = 680

 Score = 41.1 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 59/466 (12%), Positives = 121/466 (25%), Gaps = 32/466 (6%)

Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSL-----VLDRIATQKNNTHVPHWQSRLSEED 516
                   A E+ A+      +    + +L     +     T             L  E 
Sbjct: 97  LTHLSRGRAFEVPAIASFCAYWRAEAVAALDAGCGLAAAEETLLERGWRFVACDWLYIEG 156

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                 +V    + +   +TY        G      W + +V     +       + + W
Sbjct: 157 PAAIEAVVPRAREGLQSFLTYHPLLRIRHGFSEAGVWGEASVPPSAPMLKPVQLHVAHSW 216

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
               G+ +           + +  +   W     R+    + +        L  +     
Sbjct: 217 GGGLGRWVEDYCEADSARWNLVLRSIGTWGAFGQRIALYRSHRMDQPLRDWLLDMPIGSI 276

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR- 695
            + +     +       +  +      L       L+L      +G     F  A   R 
Sbjct: 277 AISHVQYRRILDEIVRDFHVDAVIVSSLIGHALDILDLPLPTLIVGHDYTPFCAALSIRF 336

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
             + TR   +      A   L R     G  +++ L++     L            PH +
Sbjct: 337 DGLCTRCDGDRLRDCFAHNPLNRFFRDAGPAYWEALREHYHRRLHQ----------PHIR 386

Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR----GTL 811
              P   +       + +     I D         +     P ++  P    R    G++
Sbjct: 387 LVAPSASVARNLHRLAPA-----IADVPVEVIAHGMAFPPRPAWEPAPTGRLRLVVLGSM 441

Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDS--HFEKENLPPHIDIIWRHLFHKISHSFLE 869
                 +++   +   +   +  +    D    F        +    R     I      
Sbjct: 442 APQKGADVLAAALPAVSVFADVFLVGCGDEGERFAALGDDRLVRRYQREELPAIIAGIAP 501

Query: 870 HEEKIQS----SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911
           H   + S    +       + A M +  +   L GFADRID  ++G
Sbjct: 502 HAGLLLSVVPETFSYTLSELWA-MGVPPVATRLGGFADRIDEGRNG 546


>gi|308163439|gb|EFO65775.1| Axoneme-associated protein GASP-180 [Giardia lamblia P15]
          Length = 1641

 Score = 41.1 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 79/784 (10%), Positives = 189/784 (24%), Gaps = 22/784 (2%)

Query: 89   FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148
              A      +     +  +++  L   I    N++ ++ + +           PA    L
Sbjct: 630  LAAPREAPADEAAVRALEEKIGALNDEIEARDNQIAELRELVDGMPAQPAEADPAQLAAL 689

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
             +    +   ++      E L     ++        A   K  S    E L    AS   
Sbjct: 690  EEENGRLRGELQALSDALEALRRSSADEARGLRSQVAHLNKEVSD-LKEALANARASGDA 748

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
                 L+  + +      +   +      +      +   +   P G+ V          
Sbjct: 749  SDVERLVELQEQLEDAQEQLLSLKDRYDCATAEMEEMRRELEQKPVGSTVYT-------E 801

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
                + TE    +           Q    +L       RE    L  +++ +  +  +I+
Sbjct: 802  EPGASGTEDLDKLREELDALKEEIQVLNEELEVMHGQNREQKDELNRLNDALDAKESLIA 861

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI-EADNEREEAISIAIALRMSLDENKK 387
                  D++  ++   ++     I    S VA   +A    EE  +    L     +  K
Sbjct: 862  DLRAQLDSTVPQDDARIKILEDEIADLRSTVAARDDAIKGFEEKTARLSELERLAADRGK 921

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
            + A         RR++ E+ +    +      PLS           ++A  +++D     
Sbjct: 922  EIA---DKERSLRRLEDEVRQLNDALCELRDKPLSVAPSDQSGAEYVDAQTEISDVDPEE 978

Query: 448  TLVKHPLAKFGFP----EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
                  +  F          L    NAL             I      + + +   K   
Sbjct: 979  QARVSSILDFDDGLVQKVDELQALVNALAGENDHYKGEHARITAEMDALREDLRNGKLRG 1038

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
                               L + + + +                  +           + 
Sbjct: 1039 DSLESDKERLMRQVRDLTDLTESLRKDLGGQQDQGEIAALRQEVAGLRSRVDELTDAAKG 1098

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                  +    L         +   S++++     KA   E  +++  L+     K    
Sbjct: 1099 KDEALEQLEKELAVARASAENTERLSELLDEVEGYKAKLGESKEMVDSLLAQLASKDAEL 1158

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
              +   +    +          +  L   V       +  L+ V     NL  ++    +
Sbjct: 1159 AGAVAGLRAVADDDGAELARARVASLENEVAELRGQLSARLAEVDAVHRNLVDSDAEAAR 1218

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
               +         +    +    +   +     Q               +  +   +  R
Sbjct: 1219 LREELGGL----RVQLEVAQVPEDTERVRMLEDQLQDARKELAELRAALEAKEMETEKLR 1274

Query: 744  KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
                        + +       +    S   ++  +       A        +   ++D 
Sbjct: 1275 GELAAADPELANKLEAS-EATVRELRESVEALQDELRALAGSRAADGDLQKLVEQLEEDL 1333

Query: 804  D-RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                +  +     I EL +K  +    +        +D      N              +
Sbjct: 1334 SGARELVSERDAAIDELKQKLRDTEEYDDLKERIAELDDEIAVLNDSLKDKDAEIAELRE 1393

Query: 863  ISHS 866
               +
Sbjct: 1394 QLEA 1397


>gi|257054814|ref|YP_003132646.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
 gi|256584686|gb|ACU95819.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
          Length = 694

 Score = 41.1 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 47/395 (11%), Positives = 101/395 (25%), Gaps = 67/395 (16%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T RA  ELR+    +    +      ++                         
Sbjct: 63  QVLAVTFTARAAGELRTRLRHLGVDGA----QARTFHAAA-------------------- 98

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN---LADIIDIIETE 162
                 L +L   W   + D   DL   + L L    AN + L      L D+   IE  
Sbjct: 99  ------LRQLRYFWPRVVGDSPWDLIDGNKLRLVGHAANKVGLPTETEVLRDLAGEIEWA 152

Query: 163 ---EKKWEDLHALKNEKYG--MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR- 216
                  +D  A+   +       +     +    +        L+    + +  A++  
Sbjct: 153 KACLVAPDDYPAVARARRRDVGHPVERVADVYRTYEQLKNDRRLLDFDDLLLHTTAVLEE 212

Query: 217 -AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                   +      ++       PA  RL+       +   V+   D +     +   +
Sbjct: 213 NRGIAEEFRNQYRCFVVDEYQDITPAQQRLLDAWLGGRDDVTVV--GDANQTIYSFGGAS 270

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            +     +       +P  ++ +L                          ++  +     
Sbjct: 271 PRPLLDFTRR-----YPDATVVRLERDYRSTP-----------------QIVELANRVIS 308

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALIT 393
            +  R        +         V   E D+E  EA ++A  +R  +       + A++ 
Sbjct: 309 GARGRPAGSGLRLVGQRPDGPQPV-FAEYDDEPAEAAAVAQRIRDLVGSGIPVNEIAVLF 367

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428
                +   +  L+  G+   +  G          
Sbjct: 368 RVNAQSEVYERALSDVGVPYQVHGGERFFARSEVR 402


>gi|149917044|ref|ZP_01905545.1| serine/threonine kinase family protein [Plesiocystis pacifica
           SIR-1]
 gi|149822322|gb|EDM81713.1| serine/threonine kinase family protein [Plesiocystis pacifica
           SIR-1]
          Length = 1066

 Score = 41.1 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/393 (8%), Positives = 82/393 (20%), Gaps = 7/393 (1%)

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
              R            V  +L+    +       +      ++ D  +            
Sbjct: 267 AGKRDEPPRDRSIPAHVQAVLERGLRVERDARWSSMAELLDALLDDPRQRRRRWLAGGAV 326

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                  +   +      +   +   T    +  A         L     V    +    
Sbjct: 327 VASFGGAVLGAQLWAQAQARELERSCTAEAAQIEASWDAARREELRVALVVGEAEQTRGR 386

Query: 628 LF-ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
           L  I    E  L  +                 + +       ++   +   ++ +   A 
Sbjct: 387 LEAIWRRAEGELDRWSEGHRQARRSACMVAAGSSSAGERSQAEAQAQIACLDRQLSTFAG 446

Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
             E       L    ++       +    L+R  +        +     +     TR+L 
Sbjct: 447 TLEAFEAGGTLALVHAVEATTELPMPESCLERAGLESEGSLTGDGAASPEELRALTRRLA 506

Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
                    R      L          +   L         + I  +        D    
Sbjct: 507 QAQTLNLATRYGEARSLVVGALEGDTFDALYLAAPALRARTQHIAAVAAHGQANYDEAHK 566

Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
                FH        +  +        +  +   +HF++      +           +  
Sbjct: 567 YYLEAFHTATE--AAEDRSALLAVFGLIWLESDRAHFDRAAEWAALGESLTQRLGGRAAD 624

Query: 867 FLEHEEKI----QSSIEKIFVNIPAKMAIESIG 895
           + +   +     QS           + A+E+I 
Sbjct: 625 YAQLYRRRGRMHQSRGAYAEAEADYRRALEAIE 657


>gi|262194098|ref|YP_003265307.1| amino acid adenylation protein [Haliangium ochraceum DSM 14365]
 gi|262077445|gb|ACY13414.1| amino acid adenylation domain protein [Haliangium ochraceum DSM
            14365]
          Length = 4183

 Score = 41.1 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 91/846 (10%), Positives = 184/846 (21%), Gaps = 46/846 (5%)

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            ++E+    D        P  +  +R L L   I         +++     +         
Sbjct: 1443 ILEQAPNQDASALRAALPATAYARRRLWLDEPIDGHGVIEHPMLRSRQTLADGREIFEGR 1502

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
             ++ L   L D     +        L  L           A   L     +    + E  
Sbjct: 1503 VSLALFPELGDHRVR-QDAVLPATWLMELGRAAGAEVLGSATITLSEIGLFAPVVIPERG 1561

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
                      L  A+   ++   +      G  G                 G + +    
Sbjct: 1562 TLRLQVLLEPLADAQLGWILASRRE----VGEDGWTR------HAAGRLERGLVEIAEGP 1611

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                 A               +   +      LA     L       +     S+ +   
Sbjct: 1612 QVPADASDMDAVYARLGEFGVDYGPAFRALLGLALHEQGLVAALGASEPRPGTSDPVRMD 1671

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
            + + + ++      D R       +   +      +A ++ + ER +  + A   R+   
Sbjct: 1672 AALQALAWHRISGPDARLVLPFGIERVTLGPGAPTLATVQTEGERADIDAFADDGRLVAR 1731

Query: 384  ENK---------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
                            L       + R        G    +     L+       + +  
Sbjct: 1732 IRGLTLRALEGTSPQGLSGLIWRTSERTLASRPLSGRWWVVGGPAALADAPGVEWVPAAA 1791

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
                       I    + P    G           AL     R  +  +           
Sbjct: 1792 PFADLPAPDGVIR--FQDPAQPSGEALTESLALVRALLE-LARPPRTLWLTRAGAGAEPT 1848

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               +      V   +    E + EL   L    L+ +  L                    
Sbjct: 1849 NETSAALWGLVRVLRQEHPELEPELIDGLERPQLEALETLDELA-LSTPERVMQDGQRLL 1907

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI---KANAIEWIDIITR 611
                           R L        G+ L+            +    A   E +D +  
Sbjct: 1908 PALTRVSSEPAAISGRWLITGASGGLGQALAQHLVARGAEELVLVSRTAPPAELLDTLPA 1967

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTL---ILGGLNEGVWPKNTAKNPFLSRVM 668
                  V       + L   G L+  +     L   +L  L+   +   +      +R +
Sbjct: 1968 TFIVADVSEPGALEAVLLRAGALDGVVHAAGQLSDGVLLQLDAAAFATVSGPKLAAARQL 2027

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
               L L T    +  +   +  A G        +  E       +R  + + +  G    
Sbjct: 2028 AEALPLPTRL-VLFSSVSAWLGAAGQAAYAAANAGLEAIAGARRARGGEAIAIAWGPWAE 2086

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI----KQLINDPYA 784
              +  R     D  R      +     R              S        + L     A
Sbjct: 2087 VGMAARASG-RDRARSARMGLEPLATGRALALFDRALGVDAASVGAFSLNEETLRRALGA 2145

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                  L              T R       + E I + +  +  +     +   D   +
Sbjct: 2146 ERVPAWLTQRAEDSATLVLPETGRAHAIREALKEQIAQVLALSADDELDWSRPFQDLGLD 2205

Query: 845  KENLPPHIDIIWRHLFHKI----------SHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
                    D + R    ++              +   ++     E   V +     +   
Sbjct: 2206 SLMAVELRDRLGRWCGQRLPATLLFDRPQLEELVAWLDETLPGGEAAAVEVNIAPIVHDE 2265

Query: 895  GIHLTG 900
             I + G
Sbjct: 2266 PIAIIG 2271



 Score = 40.7 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 89/847 (10%), Positives = 211/847 (24%), Gaps = 21/847 (2%)

Query: 14   SSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST 73
                    +  L      EN    P+ P+ +ASVT+    +   + +R       G++  
Sbjct: 3328 HPALLDAALQTLAAAVPAENQPKGPVVPIGVASVTL---HRPVPERVRVYADWRLGEQPG 3384

Query: 74   ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE 133
                   L D+  +       L         +  R LE    +        +     +  
Sbjct: 3385 TSAGDLWLVDLDGQPVAELRGLEAKEIGVGGDSDRTLEADSWLANVWVPAAEPDAPAHAS 3444

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193
              L +         LA++L      +  E +  +++  L+          AA    +   
Sbjct: 3445 RWLLVGDGDGLRDRLAESLRSHGHTLVAEGEPHDEIVWLEALDADRDGPEAARVACVTLM 3504

Query: 194  YWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
               +RLV+ +  +P  + +     EA+  +        + G   S+ A    +      P
Sbjct: 3505 ERVQRLVQESEHTPRLWLVTRGACEAQGCLVDPAHAA-VFGFARSLAAEHAELR-----P 3558

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
                + PGL      A          +   +           L + L    + R +    
Sbjct: 3559 GRIDLDPGLAPVAQAAELTRALLAGDDEDETALRGGARFVGRLQRRLPGQALGRRERVAG 3618

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
                 +   R++ +             +   ++     I      V   E     E+ + 
Sbjct: 3619 AFEIQDGQARALELGAIPAGA-LRVRFDALGVDGGAGAIIGLGDGVEGFEL----EQRVM 3673

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS--TTLHSSILT 431
            ++      +      ++ + A  +     +     +G+ +  SA              L 
Sbjct: 3674 LSEPGLGQVSHWTGPASAVAALPSGWSATRAVC--WGLPLMASARQLARSGDDEPDRWLP 3731

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
              L A+ +      +  L + P A     +      +          N        L  L
Sbjct: 3732 LTLAALPRDLPEPELPVLGQQPSASAWRIDGASL-TQRVPAHSGFSDNATWLISGGLGGL 3790

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
             L       +           S    +     ++ +      +   + + +      +  
Sbjct: 3791 GLSLAEGLVSWGVRAVALLGRSGVRTQHQRQAIERMRAAGARVRVLEADVSQQASLEAAL 3850

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                        V +        +  +   +  +    K+    +  +A A   +D    
Sbjct: 3851 ATLHDLPPLRGVVHVAGVIDDGMIAGQSAERLAAVFAPKVSGAWNLHRATAACELDHFVI 3910

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
               G ++     +SS     G ++       +  L  L+      +              
Sbjct: 3911 YSSGASLLGSPGQSSYAAANGFVDGLAWARRSAGLPALSINWGAFSDVGLAAAEAHRGER 3970

Query: 672  LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
            L  K       +       +     ++   +L  +    + S                  
Sbjct: 3971 LASKGLRNLTPEEGLRLVRSLLATDVVQVGALPFDIARWLESLPQLASSSRFAELVSSED 4030

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
               G    D    L  +         + +   +         +   L      +    + 
Sbjct: 4031 VDAGPAVEDLAALLASSVSARRVALCEDYVRRQLAQVIGIAEDQLPLRRPLTEMGLDSLT 4090

Query: 792  KLDFIPHFKKDPDRTDRGTLF--HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
             L+     +    +    TL   +  I  L    + +   +     +   +   E+    
Sbjct: 4091 GLELRNRLEAGVGKKLSATLAWSYPTIEALAGHLLEQLASQPEAAAQPAPEPEPEQATAA 4150

Query: 850  PHIDIIW 856
            P +D + 
Sbjct: 4151 PDLDALE 4157


>gi|119900140|ref|YP_935353.1| ATP-dependent exoDNAse subunit beta [Azoarcus sp. BH72]
 gi|119672553|emb|CAL96467.1| ATP-dependent exoDNAse beta subunit [Azoarcus sp. BH72]
          Length = 1241

 Score = 41.1 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 69/657 (10%), Positives = 151/657 (22%), Gaps = 56/657 (8%)

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
              A++        R++  L  FG+     +   +  T  +  L  +L AI +      + 
Sbjct: 582  DIAVLVRSHGQGARMRRALAAFGVGSVELSQASVFHTEDAEELERVLIAIAEPAREARVM 641

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
              +      +G        A  A  L  L       +I   +   +       +      
Sbjct: 642  AALATAAMGYGAAAIAALAADEAALLRVLDRFAGWREIWLARGFGVMLRRWMSDEGVAAR 701

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
              +R   E +      + +++     L       +      +++            + L+
Sbjct: 702  LLARADGERR------LTNLMHLAELLQQAAGTASPEVLLRTLATRRAEEGGEAAQLRLE 755

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
              R L  +      K L                 A           DG  V     +++ 
Sbjct: 756  SDRNLVQIVTIHRSKGLEYGIVFCPFLFDGYPPPAERGPMRAWHADDGTLVLDYRSEAAA 815

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
               +          + + L      V         +L     + +            +  
Sbjct: 816  DKTIAARIRAERMAEDMRLA----YVALTRAVHRCYLVVGCYARMAFGKPGYSESGRSLL 871

Query: 688  FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
              MA G        +  +     I +RW   +   GG     +L       L      + 
Sbjct: 872  NWMAAGAGLDPEAWAEHKMTPAEIDARWRGLVTTSGGVISLADLPAGEGEALAQDDGAER 931

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA-----VYARRILKLDFIPHFKKD 802
              + P   +      + +       +  +Q   D  A                     + 
Sbjct: 932  VPRVPRPPQVSAGWRIGSFSALIFGATHEQAARDHDARQVPVEPESPPAPPPAADDILRF 991

Query: 803  PDRTDRGTLFHNIITELIKKRINKNTPEIN--------------HLMKQIIDSHFEKENL 848
            P     G   H +   +           I                 +  ++ S       
Sbjct: 992  PRGPVAGDCLHAVFERIDFTDPGGWDAAIESALADHPQRGEADGARLHAMLRSMLRDVLD 1051

Query: 849  PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-----------KMAIESIGIH 897
             P            ++ +    E        ++                 ++A   +  +
Sbjct: 1052 APLTAGPAPLRLGTLTMARRLTELGFHLPAPRVEAEALNAWLAARGYGVPRLAFTGLEGY 1111

Query: 898  LTGFADRIDLLKSGFVDITDYKT---GDNPK--------KETAQKLIDPQLSLEAAALKA 946
            L GF D +     G   + D+K+   G+ P                   Q  L   AL  
Sbjct: 1112 LKGFIDLVFEH-DGRYWVLDWKSNHLGNAPADYAPARLEAAMQAHGYHLQHLLYTVALHR 1170

Query: 947  GSFSQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999
                 +      R    + Y+ ++                      + ++ L  ++ 
Sbjct: 1171 HLGRCVPDYDYARHFGGVLYLFVRGVRPGWQADGQPAGVFHHRPEVEVVQALDHLLA 1227


>gi|162451461|ref|YP_001613828.1| polyketide synthase [Sorangium cellulosum 'So ce 56']
 gi|161162043|emb|CAN93348.1| polyketide synthase [Sorangium cellulosum 'So ce 56']
          Length = 3828

 Score = 41.1 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 62/709 (8%), Positives = 151/709 (21%), Gaps = 41/709 (5%)

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
               D       ++P+ + +S A    L     +++  I  E     DL ++         
Sbjct: 2170 VELDDAPTSVSDAPVVIVLSAATEAQLRAQARNLLAAIRREGYTQRDLPSIAYTLQVGRE 2229

Query: 182  LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
             +        +   +       A S        +R  AE   +      + A        
Sbjct: 2230 PMQERMATTVTTMSSLLERLERACSEPPDLGDWVRGVAEGRGELVS---VFAQDDDFRGL 2286

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301
                +          + + GL           +  +  ++                    
Sbjct: 2287 VRAWLERGKLSRLVELWVKGLTFDWDQVPPAGVRPRRVSLPPYPFAMK-----RYWGPWP 2341

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
                           S            +      S        + +   I+   + ++L
Sbjct: 2342 APSAAPPATAPSRPASPPTSIALAGADAAVRSDAASPPIARSAPKERAAEIRADAAPISL 2401

Query: 362  IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421
            +            A+    S        A+  +             R       S G PL
Sbjct: 2402 VALVPP------AAMDTAASSAARSAPVAISLSPLRAEPASAAVARRASDEPPASGGEPL 2455

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
            +      +  SL  A+      +    +            ++    +  L++        
Sbjct: 2456 T----GRLRASLARALCTDEADLDQDAVFNDLGLDSVIGVEWARSIERELDVPLTASTLY 2511

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
              D   L  L         +           + E  E            +          
Sbjct: 2512 --DHPTLTRLSAHVSGLMTSARADLRAAPGPAPEVPEAPA------SPALPARGAQHEIS 2563

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                    + +        L                + +   +      +I      + N
Sbjct: 2564 IPEVAPRPVEELVAGLTQTL-----AAALYADASDIDPDRLFVDHGVDSVISVEWVRRIN 2618

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
            A   +D+   ++       ++ +         + + +         G +E    +     
Sbjct: 2619 ATFHLDLKATVLFDHPTIHQLAEHLATLDATAVRAAVDGISAAERAGAHESTARREREGA 2678

Query: 662  PFLSRVMQSDLNLKTAEKYIGQ---AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
                   +         +   +    A     A      +   ++RE  I         R
Sbjct: 2679 AEREAAARRAREDAAERQVAARHEPEASFEVEARRASDAVACVAVRERVIAAGPGEAACR 2738

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
            + V+G +  +       + + +  R +D   +      P     +E        S  K  
Sbjct: 2739 IAVIGASGRYPRAGDLDEYWSNLARGVDAVAEV-----PASRWSVERYYDPAVPSTGKVY 2793

Query: 779  INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
                +      + + D +       +           + E  K   +  
Sbjct: 2794 --CKWLAALEDVDRFDPLFFNISPAEADLMDPQHRLFLEESYKAFEDAG 2840


>gi|289665391|ref|ZP_06486972.1| glutamate-ammonia-ligase adenylyltransferase [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 969

 Score = 41.1 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 67/605 (11%), Positives = 137/605 (22%), Gaps = 28/605 (4%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           ARL       L +   + +             A  +A + A +    + E + WE    L
Sbjct: 228 ARLGQQLARLLDETTAEGFSHRVDLRLRPFGTAGRVALSFAGMDQYFQREGRDWERYAWL 287

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------ 226
           K             +L+    +   R ++  A   +    A + AE     +        
Sbjct: 288 KARAVAGDVDAGEAWLETLRPFVYRRYLDFTALDGLREMKAAITAEMARHDRLDDIKRGP 347

Query: 227 ----------KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                     +   +I G         RL+  +        +       + TA       
Sbjct: 348 GGIREIEFLAQSLQLIRGGREPRLRERRLLPALQALVAAGQIDQENGQALTTAYRFLRRL 407

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +      PQ  L +    L +   +   L +       R        L P  
Sbjct: 408 ENRLQMLRDAQTHALPQAPLDRERIALGLGYAEWAALLDALAPQRARVAAEFAELLAPRV 467

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                  + +      +   + +A I  ++           L      +  ++   +A  
Sbjct: 468 RATAPDALADYWRALPEGDAAPLAGIGLNDPAG----AHQVLADFAQSSGVRALSDSARA 523

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L R +   L          A +     L  + L              A+A LV      
Sbjct: 524 RLDRVMPALLHAATRASQPDAAVRRMLGLLQATLRRTSYLALLDEQPSALARLVDVLSRS 583

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
               E+  +      EL+  R +    D   L +   D +  +     +     R     
Sbjct: 584 ALLAERLAAYPLLLDELLDTRISGPRPDRAALHAACADTLHIEDTEAALRELNERRLALS 643

Query: 517 KELAVLLVDHILQCIT---PLVTYKTNKNSTCGNLSISDWTKLTVT-----CLQNVCLDE 568
             +A+  +D   Q +     L         T   L+ S+                     
Sbjct: 644 FRIALATLDGRQQAVESTRQLAWLAEAVVQTVLQLARSEMVAAHGHVPGGSFAIVGYGSL 703

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                    + +   L     ++  +       A  W   + + +               
Sbjct: 704 GGLELGFGSDLDLVFLYDHPPEVDASDGKRPLEAGRWFARLAQKVMALLAAETGAGRLYD 763

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +              L    E    +            ++                  
Sbjct: 764 IDVRLRPDGGKGALVSSLASYREYQRDRAWTWEHQALVRARAVAGDAALCGAFAHVRRYT 823

Query: 689 EMANG 693
            M   
Sbjct: 824 LMRVR 828


>gi|83951616|ref|ZP_00960348.1| SMC protein [Roseovarius nubinhibens ISM]
 gi|83836622|gb|EAP75919.1| SMC protein [Roseovarius nubinhibens ISM]
          Length = 1151

 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 48/537 (8%), Positives = 119/537 (22%), Gaps = 21/537 (3%)

Query: 368 REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
             +A   A    +  +  + +  L+      A                +A    +    +
Sbjct: 209 ARQARQAARYRSIGEELRRAEGMLLYRRWKDADEAVARAAAELRERVTAAARAETGAREA 268

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
           +       A                   +          A     +  L G  +      
Sbjct: 269 TKAREAAEAALPPLREEEAIAAAVLQRLQVQQDTLSDQEAAARDRIATLAGRIDQLARDI 328

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
            +   L+R A +         +      +   A L            V  +     +   
Sbjct: 329 EREAALNRDAGETIERLEWEARELSKAGEGHEARLEAASDGAHEAASVLQEREAALSEMT 388

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             ++       +  + +         +    +  +    +  + +ET S        +  
Sbjct: 389 EDVARLAARHQSAQRFLQDSRKTLEKSETEADRARDAVQVSRQALETASEG------FDA 442

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
             T     +      E +         E++    D        EG     +A+   L+R+
Sbjct: 443 ATTAEAKAQEAARAAEAALAAADEARAEAQAREADARAERSEAEGEVNALSAEVSALARL 502

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
           +  D   +       Q    FE A G       R+             L           
Sbjct: 503 VDRDTGERGQIMDRLQVEQGFEKALGAALADDLRAPEVEADGGSGWSLLPDYPEHQSLPG 562

Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                       D   +                       +     +      D Y  +A
Sbjct: 563 GVQPITHHVSVPDVLARRLSQVGVVEAVDAPHLQAELKPGQRLVSPQGDLWRWDGYRTFA 622

Query: 788 RR-----ILKLDFIPHFKK-------DPDRTDRGTLFHNIITELIKKRINKN--TPEINH 833
                   L+L+ +   ++          + D     H  +   +     ++    E   
Sbjct: 623 EEQPSAAALRLEQLNRLEELKQMLAHASAKADGARQAHETLKTRLADLTRQDAEAREARK 682

Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
              Q ++      +       + +     +  +   HEE+  ++ +++       + 
Sbjct: 683 AADQALNEANRALSRTEADRNLAQSRLEALGLAVTRHEEEAMAARKQLA-EAEGALR 738


>gi|262197281|ref|YP_003268490.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
 gi|262080628|gb|ACY16597.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
          Length = 1339

 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 52/567 (9%), Positives = 135/567 (23%), Gaps = 12/567 (2%)

Query: 320  MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
               R  +          +   + D+  + I    + +++      ++   E      AL 
Sbjct: 630  AERRQSLARSFAASNAAAADASADVTADAIDEYTRAWANARFEVCESPEAEEPPDDAALL 689

Query: 380  MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               D    +   + A  +        ++   +    +A   L      + L        +
Sbjct: 690  ARRDCLDDRLRSLAALLDELDPGPAGVSAMVVERAPAAVAALPRIASCTALPKPRRQRDE 749

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                   A   +   A+      Y   A +    +  R  KN    ++ ++ +L   A  
Sbjct: 750  TARAELAALTTELARAEHRLALGYTDDAADDASGLLQRAQKNDAPGLEARAHLLAGHAAM 809

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                      S  +      +    D + + +         +        +    +L   
Sbjct: 810  ARGAWDQADTSLRAAHATLESTAF-DEVAELVALRGAVWLARAELASTAPLGALPELAGE 868

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                    E               L +  +  +        +A    +     +      
Sbjct: 869  LTAARADAEAALTRAPEAARHVAALYAALALALTRADADSDDARAMSERARTALARIPDT 928

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
            P     + L +   L+++  +   L L                   R++   L    +E 
Sbjct: 929  PAALVDALLQVGRALQAQRQHGRALEL--FERAQQATAERHGEEHPRLLPVLLARAESEL 986

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
            ++G            R L  +      +    A   L    +  G       +       
Sbjct: 987  FLGHYERAQTRLERARALAESEPEGGADSAIAARALLGEARLRRGFYASAGEELEAALSA 1046

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
              T   D   +                    + + +  L+    A        +      
Sbjct: 1047 ARTAYGDDDLRLAPIASDLAAAYTAQGRAEDARALLAPLLEQWAAAQWADADTMALEDPV 1106

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI----IDSHFEKENLPPHIDII 855
            + D +              +   + ++  P + H ++ +     ++H +       +  +
Sbjct: 1107 RADENSALAQLEAELGRALVASAQFDEARPVLEHALETLEAVRGEAHEDLAGALLGLSEL 1166

Query: 856  WRH-----LFHKISHSFLEHEEKIQSS 877
            WR         +     +E E + +  
Sbjct: 1167 WRQESRAKRSRRYIERLVELERERRGP 1193


>gi|330825869|ref|YP_004389172.1| putative DNA repair ATPase [Alicycliphilus denitrificans K601]
 gi|329311241|gb|AEB85656.1| putative DNA repair ATPase [Alicycliphilus denitrificans K601]
          Length = 822

 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 59/464 (12%), Positives = 118/464 (25%), Gaps = 14/464 (3%)

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
             ++      L+      V+     LE+AR +        D  ++        L    A 
Sbjct: 227 AWDEVADAPALAGRAQDAVTAAATELEVARQVCAQVTAQRDHAREADARRAQLLAEREAA 286

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                  + ++ D    E  + E L     ++           L+         L     
Sbjct: 287 QTVARSAMQELADRETGEGLRLERLARRVAQRQAQAGQRRER-LEGVQAQCNALLASEPL 345

Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR-LMSTVANHPNGAIVLPGLD 263
                 ++      AEHL+      + +A    +    AR  +  +A    G     G  
Sbjct: 346 VRRAVRRL----PLAEHLLAQRAERVRLARIQLADREQARGQLRMLAQRVQGIEREAGQA 401

Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                A+       +    S           + A+    L    + V +          R
Sbjct: 402 ALQTQALRRRFGLTAEVPCSGMPLQGRCQLLADAREAQALIPSADAVLQRLADEKAGVER 461

Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
                K+ +    S     ++ E  +   +   S +AL+ A  +  E       L  + D
Sbjct: 462 EGRAVKARVLALNSVGAQLELSERNLERARGRASTLALLAAKADDMEVAR--QRLADARD 519

Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS-----SILTSLLNAIF 438
           E          D +   R + E          + G              + L  +L  + 
Sbjct: 520 ELTGLGVAGGEDGSAEARAEREEREAITAAMQAIGTQRQQQSAGLQQALARLDGVLATLP 579

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
           +  D   ++             E        AL+ V      +       +     R  +
Sbjct: 580 EPFDHNTLSAANTALDDAVTVHEAAQRAHVQALQQVQSLAALHQQREALSERQAAARRRS 639

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNK 541
           Q   + +  W         +  + L +D     ++ L       
Sbjct: 640 QLIESAIGDWTLLARCMSNDGLIALAIDDAGPALSALANDLLLA 683


>gi|84625688|ref|YP_453060.1| glutamine synthetase adenylyltransferase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|123520683|sp|Q2NY41|GLNE_XANOM RecName: Full=Glutamate-ammonia-ligase adenylyltransferase;
           AltName: Full=Glutamine-synthetase adenylyltransferase;
           Short=ATase; AltName: Full=[Glutamate--ammonia-ligase]
           adenylyltransferase
 gi|84369628|dbj|BAE70786.1| glutamine synthetase adenylyltransferase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 941

 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 69/605 (11%), Positives = 138/605 (22%), Gaps = 28/605 (4%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           ARL       L +   + +             A  +A + A +    + E + WE    L
Sbjct: 200 ARLGQQLARLLDEATAEGFSHRVDLRLRPFGTAGRVALSFAGMDQYFQREGRDWERYAWL 259

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH----------- 221
           K             +L+    +   R ++  A   +    A + AE              
Sbjct: 260 KARAVAGAIDAGEAWLETLRPFVYRRYLDFTALDGLREMKAAITAEVARHDCLDDIKRGP 319

Query: 222 -----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                +    +   +I G         RL+  +        +       + TA       
Sbjct: 320 GGIREIEFLAQSLQLIRGGREPSLRERRLLPALRALVTAGQIDQENGQALTTAYRFLRRL 379

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +      PQ  L +    L +   +   L +       R        L P  
Sbjct: 380 ENRLQMLRDAQTHALPQAPLDRERIALGLGYAEWATLLDALAPQRARVTAEFAELLAPRV 439

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                  + +          + +A +   +      ++A     S       SA      
Sbjct: 440 RATAPDTLADYWRALPAGDAARLAGMGLSDPGGAHQALADFAHSSGVRGLSDSA----RA 495

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L R +   L          A +P    L  + L              A+A LV      
Sbjct: 496 RLDRVMPALLHAATRASQPDAAVPRMLGLLQATLRRTSYLSLLDEQPSALARLVDVLSRS 555

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
               E+  +      EL+  R +    D   L +   D +        +     R     
Sbjct: 556 ALLAERLAAYPLLLDELLDTRISGPLPDRAALHAACADIVHIDDTEAALRELNERRLARS 615

Query: 517 KELAVLLVDHILQCIT---PLVTYKTNKNSTCGNLSISDWTKLT-----VTCLQNVCLDE 568
             +A+  +D   Q +     L         T  +L+ ++           +         
Sbjct: 616 FRIALATLDGRQQAVESTRQLAWLAEAVVQTVLHLARTEMVAAHGYVSGGSFAIIGYGSL 675

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                    + +   L     ++  +       A  W   + + +               
Sbjct: 676 GGMELGFGSDLDLVFLYDHPPEVDASDGKRPLEAGRWFARLAQKVMALLAAETGAGRLYD 735

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +              L    E    +            ++            Q     
Sbjct: 736 IDVRLRPDGGKAALVSSLASYREYQRERAWTWEHQALVRARAVAGDAVLCDAFAQVRRYT 795

Query: 689 EMANG 693
            M   
Sbjct: 796 LMRVR 800


>gi|322505202|emb|CAM45491.2| putative calpain-like cysteine peptidase [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 5582

 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 65/808 (8%), Positives = 183/808 (22%), Gaps = 82/808 (10%)

Query: 157  DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
            D +       +                A +            L+E+          AL+ 
Sbjct: 1550 DRLRRVRADPDADWEETARLEDAMRTRARELAASMKASERGLLLEMQTLLTADRMNALLD 1609

Query: 217  AEAEHLMKGTKGPII-------IAGSTGSIPATARLMSTVANHPNGAIVLPGLD------ 263
            ++A       +   +        A          +    +A      +    L+      
Sbjct: 1610 SDATAADMERRLRELRKSPNKNAAAIKALEEEMRKRAERLAGEYLAEVRPTYLEAEYEGR 1669

Query: 264  -----CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
                      A +         +  S        Q  +  + +        +        
Sbjct: 1670 PMETLPLDDDAAFRDAETAYLGMCESGNADPAALQRLVGAMRERATDIARGMNAADRPKY 1729

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKI-----PNIQKCFSDVALIEADNEREEAIS 373
                   V  ++    D  + R+ +    +         +    +  L+    +  +A  
Sbjct: 1730 LPKAVRGVPLRALALDDDEEFRHVEQERARAVCASGHEAEAAALEARLLARAGDLAQAQL 1789

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRF--GINIDISAGIPL----STTLHS 427
                  +  +       L+  D +   R K                G+ L      T   
Sbjct: 1790 TGDRGYLEPEPAGIPLELVPLDEDAEFRTKEAERAELKENPTRDLNGMALKEAELNTRAV 1849

Query: 428  SILTSLLN-----AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             +   L +      + +L D +  + L     A F   E    R   A            
Sbjct: 1850 ELAQRLKDGERGKVLAELYDGIPTSELPLDTDAAFHEMEVDRLRRVRADPDADWEETARL 1909

Query: 483  YDIMDLKS--------------LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
             D M  ++              L+  +     +  +        + + +     L     
Sbjct: 1910 EDAMRTRARELAASMKASERGLLLEMQTLLTADRMNALLDSDATAADMERRLRELRKSPN 1969

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
            +    +   +         L+     ++  T L+        +   L  +   +   + +
Sbjct: 1970 KNAAAIKALEEEMRKRAERLAGEYLAEVRPTYLEAEYEGRPMETLPLDDDAAFRDAETAY 2029

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS--------TLFILGTLESRLLN 640
              + E+G+   A     +  +                          + +          
Sbjct: 2030 LGMCESGNADPAALQRLVGAMRERATDIARGMNAADRPKYLPKAVRGVPLRALALDDDEE 2089

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY- 699
            F  +            + A+   L   + +        +  G   +      G    +  
Sbjct: 2090 FRHVEQERARAVCASGHEAEAAALEARLLARAGDLAQAQLTGDRGYLEPEPAGIPLELVP 2149

Query: 700  --------TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
                    T+      +    +R L  +  L   +      +  Q   D  R        
Sbjct: 2150 LDEDAEFRTKEAERAELKENPTRDLNGM-ALKEAELNTRAVELAQRLKDGERGKVLAELY 2208

Query: 752  PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                  +     +A         ++++  DP A +       D +    ++   + + + 
Sbjct: 2209 DGIPTSELPLDTDAAFHEMEVDRLRRVRADPDADWEETARLEDAMRTRARELAASMKASE 2268

Query: 812  FHNIITELIKKRINK---------NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
               ++        ++            ++   ++++  S  +       ++   R    +
Sbjct: 2269 RGLLLEMQTLLTADRMNALLDSDATAADMERRLRELRKSPNKNAAAIKALEEEMRKRAER 2328

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
            ++  +L         +   ++    +  
Sbjct: 2329 LAGEYLA-------EVRPTYLEAEYEGR 2349


>gi|154340020|ref|XP_001565967.1| calpain-like cysteine peptidase [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 5544

 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 65/808 (8%), Positives = 183/808 (22%), Gaps = 82/808 (10%)

Query: 157  DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
            D +       +                A +            L+E+          AL+ 
Sbjct: 1550 DRLRRVRADPDADWEETARLEDAMRTRARELAASMKASERGLLLEMQTLLTADRMNALLD 1609

Query: 217  AEAEHLMKGTKGPII-------IAGSTGSIPATARLMSTVANHPNGAIVLPGLD------ 263
            ++A       +   +        A          +    +A      +    L+      
Sbjct: 1610 SDATAADMERRLRELRKSPNKNAAAIKALEEEMRKRAERLAGEYLAEVRPTYLEAEYEGR 1669

Query: 264  -----CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
                      A +         +  S        Q  +  + +        +        
Sbjct: 1670 PMETLPLDDDAAFRDAETAYLGMCESGNADPAALQRLVGAMRERATDIARGMNAADRPKY 1729

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKI-----PNIQKCFSDVALIEADNEREEAIS 373
                   V  ++    D  + R+ +    +         +    +  L+    +  +A  
Sbjct: 1730 LPKAVRGVPLRALALDDDEEFRHVEQERARAVCASGHEAEAAALEARLLARAGDLAQAQL 1789

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRF--GINIDISAGIPL----STTLHS 427
                  +  +       L+  D +   R K                G+ L      T   
Sbjct: 1790 TGDRGYLEPEPAGIPLELVPLDEDAEFRTKEAERAELKENPTRDLNGMALKEAELNTRAV 1849

Query: 428  SILTSLLN-----AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
             +   L +      + +L D +  + L     A F   E    R   A            
Sbjct: 1850 ELAQRLKDGERGKVLAELYDGIPTSELPLDTDAAFHEMEVDRLRRVRADPDADWEETARL 1909

Query: 483  YDIMDLKS--------------LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
             D M  ++              L+  +     +  +        + + +     L     
Sbjct: 1910 EDAMRTRARELAASMKASERGLLLEMQTLLTADRMNALLDSDATAADMERRLRELRKSPN 1969

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
            +    +   +         L+     ++  T L+        +   L  +   +   + +
Sbjct: 1970 KNAAAIKALEEEMRKRAERLAGEYLAEVRPTYLEAEYEGRPMETLPLDDDAAFRDAETAY 2029

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS--------TLFILGTLESRLLN 640
              + E+G+   A     +  +                          + +          
Sbjct: 2030 LGMCESGNADPAALQRLVGAMRERATDIARGMNAADRPKYLPKAVRGVPLRALALDDDEE 2089

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY- 699
            F  +            + A+   L   + +        +  G   +      G    +  
Sbjct: 2090 FRHVEQERARAVCASGHEAEAAALEARLLARAGDLAQAQLTGDRGYLEPEPAGIPLELVP 2149

Query: 700  --------TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
                    T+      +    +R L  +  L   +      +  Q   D  R        
Sbjct: 2150 LDEDAEFRTKEAERAELKENPTRDLNGM-ALKEAELNTRAVELAQRLKDGERGKVLAELY 2208

Query: 752  PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811
                  +     +A         ++++  DP A +       D +    ++   + + + 
Sbjct: 2209 DGIPTSELPLDTDAAFHEMEVDRLRRVRADPDADWEETARLEDAMRTRARELAASMKASE 2268

Query: 812  FHNIITELIKKRINK---------NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
               ++        ++            ++   ++++  S  +       ++   R    +
Sbjct: 2269 RGLLLEMQTLLTADRMNALLDSDATAADMERRLRELRKSPNKNAAAIKALEEEMRKRAER 2328

Query: 863  ISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
            ++  +L         +   ++    +  
Sbjct: 2329 LAGEYLA-------EVRPTYLEAEYEGR 2349


>gi|86211705|gb|ABC87509.1| polyketide synthase [Streptomyces sp. NRRL 30748]
          Length = 5712

 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 69/767 (8%), Positives = 166/767 (21%), Gaps = 44/767 (5%)

Query: 109  LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
            L  LA L +         +        L          WL  ++A+        +  W+ 
Sbjct: 1884 LTSLAELHVRGVRIDWGPLFAGVSPVELPTYAFQRERFWLGADIAESAVDTWRYQISWKP 1943

Query: 169  LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV-------GYQIALMRAEAEH 221
            L  +        WL         +      L+E   +S           +  L     + 
Sbjct: 1944 LPDMDPPALSGTWLAVVPEGDEWAMAGARALIESGTASVRTLQVTCDADRRTLAGPLTDV 2003

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                    ++   +   +P  A    +        ++       +   +W       T +
Sbjct: 2004 AGSEDIAGVVSFLAADEVPHPAHPALSRGMAHTVELLCSLTTADVEAPLWCVTRAAVTAL 2063

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVK----RLGNVSNEMYGRSMVISKSFLP---- 333
                    +  Q ++        ++R +       L    +    R  V   +       
Sbjct: 2064 --PADPAPSPAQAAVWGFGRVAGLERSERWGGLIDLPVHCDAHVLRRFVAVLAQAAGEDQ 2121

Query: 334  ---PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA 390
                 ++ +        +            ++           +A  L  S  E+     
Sbjct: 2122 VAVRPSAALGRRLEPAPRTGPAGAWRPHGTVLITGGTGVLGAHVARWLARSGAEH----L 2177

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLH-SSILTSLLNAIFKLNDFMAIATL 449
            ++ + R         L      +    G+ ++ T    +   +L   +  + D  A+  L
Sbjct: 2178 VLLSRRGPQAPGAAVLDDELTAL----GVRVTLTACDVTDRAALAGVLASVPDLTAVVHL 2233

Query: 450  VKHPLAKFGFP-EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                        +          ++          D   L++ VL   A           
Sbjct: 2234 AGTVRFGNSIDADLDEYAGVFDAKVTGALHLDELLDHSSLEAFVLFSSAAAVWGGVGQAG 2293

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
             +  +     +A       L   +          +      +S      +     V    
Sbjct: 2294 YAAANALLDAVAQRRRARGLPATSIGWGTWGGSLAPEDEERLSRIGLRPMRPEVAVTELR 2353

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
            H                  F      G      +    ++         +    + ++  
Sbjct: 2354 HVVGSAEPCPAIADVDWETFGPAFTAGR----PSRLLSELPRLRNTSGAMAMTGDHAALR 2409

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
              L  + +       + L   +      +         V    L   +      +   + 
Sbjct: 2410 RRLAGVSAADQARTLVDLVREHAAELLGHRGPAAIDPTVPFRQLGFDSLTAVELRTRLNA 2469

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                     +       ++    A   L R  +LG            +         D  
Sbjct: 2470 ATGLRLPATLLF-----DHPSCRAVADLLRSELLGDRPGSLAASSATEAVPAGVVASDEP 2524

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                      P      +      SE + +++D        +  L      +        
Sbjct: 2525 IAIVAMSCRFPGGIGTPEDLWRVVSEGRDVLSDFPDDRGWDVDALYDPDPDRPGTSYVRT 2584

Query: 809  GTLFHNIITELIKKRINKNTPEIN-----HLMKQIIDSHFEKENLPP 850
            G   H+      +         +       L+ +      E+  + P
Sbjct: 2585 GGFLHDAAEFDPELFGISPREALAMDPQQRLLLESAWQVLERARMAP 2631


>gi|256396900|ref|YP_003118464.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
 gi|256363126|gb|ACU76623.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
          Length = 787

 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/351 (10%), Positives = 87/351 (24%), Gaps = 38/351 (10%)

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
           L          + +  I +  D          P        +  +R         +    
Sbjct: 308 LLDRAEGRAAKARVQLIAQRADGPR-------PKFAEHPDAETEAREVAREIKKLVDAGV 360

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
              ++  L  +       ++  +           E       + + I   +      +++
Sbjct: 361 RLSEVAVLYRINAQSEEYEQAFSDAGVPYILRGVERFFERPEVREAIQVWLRGAAKARSD 420

Query: 541 KNSTCGNL---------SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             S                            +               +  ++L++L S  
Sbjct: 421 HASDALPGLGGGPAEDGEGGSLATEVRAIFASHGWTPLAPKGAGRLRDRWESLAALVSLA 480

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
            E G     +    +D  +  +              + +     ++ L +D + L G+ E
Sbjct: 481 EEYGRT---HPDAGLDRFSAELRERADAQHAPTVEGVTLSTFHAAKGLEWDAVFLVGMTE 537

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPT 710
           G+ P   A               +T E+   +    +      R  L  + +L  +    
Sbjct: 538 GMMPITYA---------------ETPEQVEEERRLLYVGVTRARERLFLSWALARSPGGR 582

Query: 711 I---ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
                SR+L  L    G D  +             R+   T+     +RP+
Sbjct: 583 ASRSPSRFLDGLRGGVGRDTREGAAGGVIRGGGSGRRRVPTSSGDSEERPR 633


>gi|87302318|ref|ZP_01085143.1| UvrD/REP helicase-like protein [Synechococcus sp. WH 5701]
 gi|87283243|gb|EAQ75199.1| UvrD/REP helicase-like protein [Synechococcus sp. WH 5701]
          Length = 1285

 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 71/777 (9%), Positives = 176/777 (22%), Gaps = 85/777 (10%)

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHP---NGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
              G  +I     + P   R++             +++   D       +    +  T  T
Sbjct: 397  RYGAALIDEFQDTDPLQWRILHRAFAAAAAQPRHLLVLVGDPKQAIYRFRG-GDLDTYRT 455

Query: 283  SSNTTYSTHPQYSLAKLLDFL----------DIKREDVKRLGNVSNEMYGRSMVISKSFL 332
            +S+T  ++H      +    L           + R  +      +    G   +I  +  
Sbjct: 456  ASSTAATSHRLARNFRSSPPLLEALNRLMAPGLPRSQLPVPPLQAARPEGGEPLILPAGQ 515

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLDENKKKS 389
             P       +D    +    +    +           + +     +     S        
Sbjct: 516  HPLQLLWLGSDRAAAEALPSRGELENRVGDRVAALVLDLLLRGWRMGEGEGSRPLQPSDL 575

Query: 390  ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
             L+      A  ++  L R G+   + +   +     +++L  LL+A+ +      +  L
Sbjct: 576  CLLVDRHQQAEDLREALERRGLPSRLLSQGDVFAGEGAALLQRLLDALAEPGSGPRLRLL 635

Query: 450  VKHPLAKFGFPEKYLS--RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
               PL  +   +   +  +  + L     R  +   D   L +L     + +     +  
Sbjct: 636  AASPLLGWSPQQLAAAGSQEWDRLSGQLARLAERLPDDGLLATLGRLLRSEELARLSLQG 695

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN----------STCGNLSISDWTKLT 557
                  ++  EL    +            +   +               + +++    + 
Sbjct: 696  RWLADLQQCAELVQERLHQQRLGAAASADWLRRRRLHPPETAPENQQPHSDAVASAVGVV 755

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                           P  W                       +     + +  R   G+ 
Sbjct: 756  TVHRSKGLEFPVVICPYFWQGVGSTNRRGGRGIGRRWTPPQASGPQLDVHLDQRWGPGQE 815

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGL-NEGVWPKNTAKNPFLSRVMQSDLNLKT 676
               + + + T          L     L++ G         N       S      L    
Sbjct: 816  AAEQEQAALTAERERLAYVALTRARELLVLGFGPARGQGSNPLIPWLFSDQPLPALEADD 875

Query: 677  AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                        E   G            +  P   +    ++    G      +  R  
Sbjct: 876  DIDAGRSDQEWLEHLEGEIERRALPITLISGDPEQPAARRWQVPAEAGDLRTGPVP-RWS 934

Query: 737  CYLDWTR-------KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789
                W R       +  +          +                      DP +     
Sbjct: 935  LLSGWGRSSYSSWTQGAHGEPLAPEAIEEGRETDGFDRTASDADGPGPQATDPVSPKQGP 994

Query: 790  ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849
                         P     G   H I+  +  ++   +      + +++  +  + E+ P
Sbjct: 995  ETWGGRNGPLAMFPRGAAAGDCLHRILERVDHRQPGDDPLHRELVERELERAGLDLEHAP 1054

Query: 850  PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI------------------ 891
              +  + +     +  +  E          ++   +P  + +                  
Sbjct: 1055 ATLQFLEQLRHTPMGGALGEVCLAQLDPRRQLR-EMPFDLPLALGADASAGRALVRAQGL 1113

Query: 892  -------ESIGIH-----------------LTGFADRIDLLKSG----FVDITDYKT 920
                       +                  LTG  D +     G       + D+K+
Sbjct: 1114 AEVFSRHPEGSVSGTYPQRLAELNVASRGFLTGSIDLVFTAPGGDGQERWWVADWKS 1170


>gi|150396102|ref|YP_001326569.1| hypothetical protein Smed_0879 [Sinorhizobium medicae WSM419]
 gi|150027617|gb|ABR59734.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 1153

 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 58/655 (8%), Positives = 142/655 (21%), Gaps = 48/655 (7%)

Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
           +L      +P +       ++            H    L    D L  +R  +    +V+
Sbjct: 149 LLFSASSGLPDSTAILTDLRADADRFFRPQARKHQLAELKSEFDALKAERNAI----DVN 204

Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377
              Y               +  R    L      I+     + L+       + ++    
Sbjct: 205 AREYAALRKALTGVRARHEAAARLRHELRADRDRIRAQRDALPLLARLTGVRQQLAAQPP 264

Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
           L +   E +++  L+            +L                               
Sbjct: 265 LPVPPAEWQEELPLLCRRDAEIAAQLRQLQDELK-------------------RRREELS 305

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
               D  A++   +    +    E     A   +       ++ + +I      + +   
Sbjct: 306 GLPRDEQALSAAERFEALRDAALEARYLTAARDMPSRLEELSRTAAEIDACLLRLGEAGN 365

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
               +  +P  ++   ++       L + +      L   + N++      +        
Sbjct: 366 PDVASLLLPTARAIRLQDLVRRHASLSERLASAREELEMAEANRSEAERESARLKEGAAD 425

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
              L        +    L  +   + +  L   + +    ++  A    D+         
Sbjct: 426 PALLAERVHLLRQSDCLLRQQASAREIERLEMALSDRLDALRPFAGSIDDLAA------L 479

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
             P               +         +   +E             +     D     A
Sbjct: 480 PAPAPGLVDAWRAEDATAAERRLRLGDRIADESERQAGDKARLAALAANGGAVDDATACA 539

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
            +    +A     A+             N      +R L +   +  T            
Sbjct: 540 LRQRRDSAWQKHRASLDDRTATLFEAALNEHDAATARRLAQADRVAETRSLALAITERGA 599

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            L          ++ H +R                + + QL        A   L+ +   
Sbjct: 600 RLQALEAQRKAIEEEHERRSATIGEAAHACGLPGTTALPQLEAWLGTRAAAVELRAELRN 659

Query: 798 HFKKDPDR-TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856
             K+      +       +  EL +  +    P+    +    +    +           
Sbjct: 660 ALKERNRADAEEKAAVGELRVELARLGMTDALPDRLDALLAAAERVASRAQAASTAYRNA 719

Query: 857 RHLFHKISH------------------SFLEHEEKIQSSIEKIFVNIPAKMAIES 893
                + +                      E EE +  +     V  P    I  
Sbjct: 720 VSQVERATEALEKRQAGCAAAEAAMASWCEEWEEALAGTWLSRQVERPLPQEIGP 774


>gi|302869734|ref|YP_003838371.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
 gi|302572593|gb|ADL48795.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
          Length = 707

 Score = 40.7 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 78/293 (26%), Gaps = 22/293 (7%)

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
                I +     A   L  H   + G   +   R        A         ++   + 
Sbjct: 299 LANAVISQARGTEARLRLELHGQRRPGPEPE--LRIFTDEPAEANAVAARCRALVAGGTP 356

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
             +     + N     ++  LSE      +   +   +           + +T    + +
Sbjct: 357 AREIAVLFRTNAQSEAYEKALSEAGVPYVLQGAERFFERPEVRQAMIALRAATRSADAGT 416

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                 V  L  V        P     E  + L++L     E  +  +      +   T 
Sbjct: 417 PLPAAVVEALTAVGWAPDAPPPGGAARERWEALAALVQLAEEYAAQAEEEP--GLTGFTE 474

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            +     +  +     + +     ++ L +D + L GL EG  P   AK           
Sbjct: 475 ELARRAAQQHVPTVEGVTLASLHSAKGLEWDAVFLVGLAEGTLPTTYAK----------- 523

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRS--LRENNIPTIASRWLQRLLV 721
               T E+   +    +      R  L  + +            SR+L +L  
Sbjct: 524 ----TMEQVEEERRLLYVGITRAREWLWLSYATARSPGGRARRPSRFLPQLDR 572


>gi|329939269|ref|ZP_08288605.1| Molybdate metabolism regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329301498|gb|EGG45392.1| Molybdate metabolism regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 1192

 Score = 40.7 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 56/631 (8%), Positives = 123/631 (19%), Gaps = 33/631 (5%)

Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
               G +V            W     +     +S     T P   L  +   L       
Sbjct: 72  RPRRGGLVAHTFFHSPDLDSW---DRRLATAKASWGGDGTDPGGRLPGIDPHLAEAARRH 128

Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK----------CFSDVA 360
                        +++  +  L  D                +               D  
Sbjct: 129 LDGTADPVGAAVLAVLTDRGKLVYDPVAGAWHLRHGMVFAALATLELFSLHHEYDLRDER 188

Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
            +E     E A      LR +  +  +   L  A+ ++ R     L              
Sbjct: 189 TVELSVRPEGAALQQSWLRRAAADYVRTR-LCEAEESVYRETVAALAAHR---RGPRRRI 244

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
           L + L  S    +                ++  L +     + L     A          
Sbjct: 245 LVSYLVPSETDWVAECCADPEAVTGEDPTLRAMLFESLNDARQLRDLLRAGAAAYDGRRS 304

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
               + +        +  Q         Q + ++   +L   L                +
Sbjct: 305 TVATVAEGVGPAAGELIAQAWRRPTTPAQGQWAQTQADLLARL-----PTDEAFGVLLAH 359

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                   ++ +  +        +        P    + +    + + +      S +  
Sbjct: 360 AEEKWVRPALLEAAERYPVRAARLLAGRAASAPGRNPQLDQLLTAHVAAHRALLVSRLAQ 419

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL-----NEGVWP 655
              E   ++  L+         +    L +               + GL         W 
Sbjct: 420 FPPEAAGVVRELLHPPVPDAPADALPDLLVSPPWTRERTAPGPKTVRGLVSAPETRMEWG 479

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKY---IGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
               +              +T  +    +      F   +  R L       +   P +A
Sbjct: 480 PGEREAWAAVAEEPERRWRRTHARPYPDVETLRQQFTQVDVFRLLDLFHGGPDTYRPLLA 539

Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772
               + + +L         +                                A+     F
Sbjct: 540 QWVPEDVWMLEEELKPVAARWEEDALPPLLHAAARQPAVAGGLLLPYRQLEVARLMADWF 599

Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
             +K       A +AR       +            G + H     L           + 
Sbjct: 600 VRLKSAAPTARAWFARHGAGAAALLVPDAVGPA---GPVRHRAEHALRALAATHGEDAVF 656

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
                               D +   L  ++
Sbjct: 657 DAAAGHGPEAVAAVRDLLSADGMELALPSRM 687


>gi|162448347|ref|YP_001610714.1| ATP-dependent deoxyribonuclease subunit A [Sorangium cellulosum 'So
           ce 56']
 gi|161158929|emb|CAN90234.1| ATP-dependent deoxyribonuclease subunit A [Sorangium cellulosum 'So
           ce 56']
          Length = 1254

 Score = 40.7 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 58/729 (7%), Positives = 151/729 (20%), Gaps = 105/729 (14%)

Query: 74  ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE 133
           IL  + +L D+  E       L+ +L      +  L     +     +   +        
Sbjct: 222 ILDRLAALADLGAEADREGDYLAQSLRNLDRYLAELRRREEVTGGRDHDGLEAELGDVAR 281

Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193
                      A       A+++   +  + + + +    +                A  
Sbjct: 282 WKEWRWKGSGKAFGGDLTRAEVLAQRDRVKVELDAVLTAASADLAACLSRELRPPIEAYD 341

Query: 194 YWTERLVELNASSPVGYQIALMR--AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
               R  +L+    +     L+R        +      + +     + P  A ++  +A 
Sbjct: 342 ALKARAGKLDFLDLLLCARDLLRSSRGVREELNLRFSHLFVDEFQDTDPLQAEILLLLAA 401

Query: 252 HPNGAI-----------VLPGLDCHIPTAIWNTITEKSTNITSSN--------------T 286
                            +    D       +          T +                
Sbjct: 402 DDLSEADWTRARPVPGKLFVVGDPKQSIYRFRRAEVALYEATKARLVACGASVLYLSTSF 461

Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI-- 344
             +   Q ++      L                              P    +       
Sbjct: 462 RSAPSIQEAVNAAFAPLMQGGTAEGERAATQARYVALERFRDDPPEQPTVIALPVPRPYG 521

Query: 345 -------LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS----LDENKKKSALIT 393
                     +        + V  +        A       R       +   ++  L  
Sbjct: 522 DFGKISDFRVRQSIPDAVGAFVHHLIHGGAGAGAALDGDGARRWTVTERERPGQRVPLEA 581

Query: 394 AD------------RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                          +  R     L    I   +  G           + S L AI   +
Sbjct: 582 RHICLLFKRFQTFGEDATRAYVRALEARRIPHVLVGGRSFHDREEVMAVRSALLAIEWPD 641

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
           D +++   ++ PL                                    L+L R   ++ 
Sbjct: 642 DELSVYATLRGPLFALTDD-----------------------------VLLLYRDRFRRL 672

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
           +           +   E     +  + + +  L      +N      ++      T    
Sbjct: 673 HPLFQPPDDGSLDLAVEGGARPLREVAEALAVLGRLHRERNRRPIADTLGGLLDETRAHA 732

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                           E+    +  +        +    +   +++ +    +   V   
Sbjct: 733 GIAIWPTG--------EQALANVLRVMDLGRRFEAAGATSFRAFVERLELDAERGEVAEA 784

Query: 622 I---EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP-------------FLS 665
               E +  + I+    ++ L F  +IL         +  +++               + 
Sbjct: 785 PVVEEGTEGVRIMTVHRAKGLEFPVVILADPASPAVHQLPSRHVDPELGLWAEPIAGCVP 844

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
             +    +              +  A   R L+   ++ +       S     +L     
Sbjct: 845 AELVERRDEVLRRDREEAVRLAYVAATRARELLVVPAVGDARPGDGTSDGWLDVLHPVLY 904

Query: 726 DFFDNLKKR 734
                 +  
Sbjct: 905 PAPRERRSP 913


>gi|315506913|ref|YP_004085800.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315413532|gb|ADU11649.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 1061

 Score = 40.7 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/367 (9%), Positives = 83/367 (22%), Gaps = 38/367 (10%)

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            +   LR S D    +   +  +   +  +     +      +  G  L           +
Sbjct: 720  VGYFLRFSQDFTDARLVRLNRNYRSSAPILAAAVQAIAPSSLVRGRRLDPARLDPEAPLV 779

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                       A               E     +  +L+   + G   S    D+  L  
Sbjct: 780  GRYAASSAYDEA-------DFVVRTVDELVGGLSHRSLDSGRIDGRTTSLSFSDIAVLYR 832

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                       +      + +   +               +            + S++  
Sbjct: 833  TDAQAAPIVDALARANIPVQKRSHDRLRDRP--------GVPAIARELRHAGLDGSLAAR 884

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
             +     L                 E+ +T   L + +            +    + +L 
Sbjct: 885  VRQAGQILAERFAVPTLDGSGAVRPEDVRTAVDLLTPLARRCGD------DLDLFLNQLA 938

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
             G  V     ++  + +L    ++ L F  + L G  +G+ P     +            
Sbjct: 939  TGAEVDALDPRAEAVTLLTLHAAKGLEFPVVFLVGAEDGLLPLRWPGSE----------- 987

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYT-----RSLRENNIPTIASRWLQRLLVLGGTDFF 728
                +    +    F      +  +Y      R+       T  S +L  +         
Sbjct: 988  -PDDDAVAEERRLFFVGLTRAQDRLYVSHAGRRARHGAERDTRPSPFLDVIDPALFERLD 1046

Query: 729  DNLKKRG 735
                +R 
Sbjct: 1047 ATEPRRP 1053


>gi|322498509|emb|CBZ33582.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 2676

 Score = 40.7 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 50/681 (7%), Positives = 134/681 (19%), Gaps = 34/681 (4%)

Query: 94   LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
            + +      ++  Q      +L      +  +  +    +    L     +    A    
Sbjct: 626  IRTAEEARALAEGQERARQRQLQREAVEEAAEQKRQQQRQEEEVLRQRQQHEERAAFACQ 685

Query: 154  DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
             + D    E    E L           +   AD  +  +      L           +  
Sbjct: 686  ALQDR---EGLAREALEQ-AEAAVREHYERGAD--EWLTAALPHELEAQRLVRAAAERRR 739

Query: 214  LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
                +  HL       +       +       + + A            D          
Sbjct: 740  QQEQQQAHLAAEEG--LDRDEVEEAEANAWSWLLSGARVDRVVAATEEGDRVQREYEELR 797

Query: 274  ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333
                   +            +  A  +++    R  ++    V  +         +  L 
Sbjct: 798  FERLQLQLREDTAELVHEEAHGRASFIEYEAATRSLLQSHHAVQRQALAEGERRQEVELL 857

Query: 334  PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393
               +  R   + +     + +  ++    E               R +     +  A I 
Sbjct: 858  KKAAARREAALRQRFQWELDELDAE----EVSGRAMLREVEREERRTAHLVFLQTLASIR 913

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                LA+             D   G  + +   + I   +   + +     A+  +++  
Sbjct: 914  RKEVLAQHAAA--VAAAAAADEPGGTSVLSEASTMIAAQVHRRVQQRQTDAAVPLMIEGD 971

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                G  +        A           + ++ +L++      A  +          R  
Sbjct: 972  --GDGVDDNTADMVGAATPPQFRTPLITAKELAELRAREASYAAELQAALERLREAERRV 1029

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
             E+  +                                            +       + 
Sbjct: 1030 AEEAAIRAQAEQERQAAHAESQRLLQEAEQRAEQRIREARDAAEQLLQAQLADLRDEAVR 1089

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                    + L+    + +           +      +L + +    +  + +       
Sbjct: 1090 RAEHAAVMQALAEEEQRAVLEA--------KLQAAQRQLDEAQQRAQEEVRRARADAAEM 1141

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
              +              E            L+   +        E+ + + A     A  
Sbjct: 1142 AAADAARAAREAQRRDEEWQERCRAEHLLRLAEQEREK------EEAVRRLAEIEVRAAE 1195

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
               L    + R           ++R            ++   Q        L        
Sbjct: 1196 AVRLAREEAARTAAEAQERLAEMERRQ----QAREAEVQSAAQRVRSVRDSLREFDSSTQ 1251

Query: 754  YKRPKPFPPLEAQPRTYSFSE 774
              R           +    S 
Sbjct: 1252 SSRYATPFRAVLPGQRPPTSS 1272


>gi|148656854|ref|YP_001277059.1| glycosyltransferase 36 [Roseiflexus sp. RS-1]
 gi|148568964|gb|ABQ91109.1| glycosyltransferase 36 [Roseiflexus sp. RS-1]
          Length = 2864

 Score = 40.7 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 83/740 (11%), Positives = 177/740 (23%), Gaps = 78/740 (10%)

Query: 8    VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLL----------ASVTIYVPTKRAI 57
            V T+   +   R+   AL+ GTL        ++P               V I +P+    
Sbjct: 647  VITLDADTQLPRDTARALI-GTLAHPLNQAVIDPQTQRVVQGYGILQPRVGIDLPS---- 701

Query: 58   QELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL 117
              LRS F  I+     + P   ++ DV  + F   +     +  PV              
Sbjct: 702  -ALRSRFARISSGNVGVDPYTTAVSDVYMDLFGEGIFAGKGIYDPV-------------- 746

Query: 118  IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY 177
              R  L D   +    S   +    A A  L+    +++D   T    +    A ++   
Sbjct: 747  AMRTALHDRFPENTLLSHDLIEGCYARAALLSD--VELLDSYPT---TYAAYSARQHRWV 801

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237
               W +A   L    +             P+  +  +       L       +++AG   
Sbjct: 802  RGDWQIAGWLLPRVPR---ASGSSAPNILPLISRFKIADNLRRSLTPPATLALLVAGWFV 858

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                 A        H    +    +   +  A W  +         S    +     ++A
Sbjct: 859  LPGRPAVWTLLALGHYLAPLTFAVISLRLMPADWRYLRTHLITTIGSLRWTALQLLLNVA 918

Query: 298  KLLD--------------FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
             L D               + +    +      +      +            S +    
Sbjct: 919  MLPDQAWLNVDAIVRTLWRMGVTHRRMLEWETAAQAQRRLTDSFDYLVRRMAPSAVVALA 978

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
            ++  +I  ++  +     + A          A      LD+      L+       RR+ 
Sbjct: 979  LVVMRIDRLRASWLPALPVVAS------WVTAPFFARWLDQEYIPR-LVAPLSVDDRRML 1031

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLN-AIFKLNDFMAIATLVKHPLAKFGFPEK 462
              + R          +P    L            + +      I   +   LA   F   
Sbjct: 1032 RRVARATWAYFDRFVVPEQNFLAPDNFQETPRPVVAERTSPTNIGLQLLADLAAVDFGYL 1091

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                    +E V     +       L +    R       T  P     +S  D      
Sbjct: 1092 GARSLVERVERVFDTIQRMERFRGHLYNWYDTR-------TLHPLPPLYVSTVDSGNLAG 1144

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
             +  +   +  L   +           + D  ++    L          +  L   +   
Sbjct: 1145 HLLTLRHGLRAL--IERPAYGPWIIEGLRDILEIIQERLPADARGRTSLVALLQALDATP 1202

Query: 583  TLSSLFSKIIETGSCIKANAI---EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                 +   +   + +           +    L               +           
Sbjct: 1203 ETLEGYRARLLQAADLAIILARESRVAEWAEALARQVYSLLDDMPHDDVPSAAEDPQF-- 1260

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699
                  +  L +      T  +       +  L         G+  + +     +   + 
Sbjct: 1261 ---RAAVERLTDMCIVLITEMDFRFLYDERRRLFAIGYNVSEGRRDNSYYDLLASEARLA 1317

Query: 700  TR-SLRENNIPTIASRWLQR 718
            +  ++    +P     ++ R
Sbjct: 1318 SFIAIALGEVPQEHWFYIGR 1337


>gi|167825267|ref|ZP_02456738.1| val start codon [Burkholderia pseudomallei 9]
          Length = 1013

 Score = 40.7 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 42/501 (8%), Positives = 115/501 (22%), Gaps = 31/501 (6%)

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
           A+ + N   A+         +         R ++ L        ++  D++ +       
Sbjct: 206 AVVEANRDDALLHRAAERFERRLLDRAQSRRHEHVLVGREFLHGQHDIDLLAVLQREHVD 265

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV---TYKTNKNSTCGNLSISD 552
             T             L            D +++             +        +   
Sbjct: 266 DRTAARVARALRHLVHLDPVHAAAVREAQDVVVRVRDEQRLDPVVFLHLRRLLAAAAALL 325

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              L      +V    HR    L  ++            +      +         + + 
Sbjct: 326 RAVLGQRLRLHVARVRHRDHHVLRRDQVFGVQLGRVQLDLRAARIAELRLH-----LRQF 380

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           +  +   P   + +   I        +  D L+L    E +                  +
Sbjct: 381 VADQRRDPLGPRENVEQIGDLRHHVAIFADDLVLLEAREALQAHLEDFLRLRVGQPVQAV 440

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
            L    +          +A   R ++  R+           R+  R  +L          
Sbjct: 441 ALHAERRTQAL--RTVRVAPAGRRVLGFRAREHVAHERRIPRF--RHQLLLRDRRRRRGL 496

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                 +D   +     +              A  + ++    + L + P     R ++ 
Sbjct: 497 DDRDELVDVRERDGEAFEHVAALARLAQFVDGAPRQHFAPMRQEALQDLPQIQELRLVVD 556

Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                H ++    +    +  + +       ++ +           +    E   +    
Sbjct: 557 ERDHVHAERVLQLSRLVQVVQHHLGHFAALELDHDAHAALVGFVADVGDALELLLVDELR 616

Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM-----------------AIESIG 895
           D + +     +   F++ +    +      + +  +                  A++  G
Sbjct: 617 DPLEQRALVDLVRQFVDDD--RHALAAVDLLEVRGRAHHDAPAPGAIAVAHAGDAVDDAG 674

Query: 896 IHLTGFADRIDLLKSGFVDIT 916
               G  D +D      + I 
Sbjct: 675 RREIGRGDDLDQFVDARLRIV 695


>gi|238632100|gb|ACR50785.1| polyketide synthase [Streptomyces longisporoflavus]
          Length = 5029

 Score = 40.7 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 51/564 (9%), Positives = 108/564 (19%), Gaps = 25/564 (4%)

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            EDV      +      +           T+      +     P ++   + +A   A+  
Sbjct: 462  EDVAPAAQSTGAQTNGAQTTGARSTGASTTGPLPYVLSARSEPALRDQATRLADFLAEQP 521

Query: 368  REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
                  +A +L +     ++++ L   DR        EL         + G  L      
Sbjct: 522  AHRLTDVAHSLAVHRSAFEQRAVLFAPDRGTLITHLTELAEGRTPGGAARGTSLRGGTAF 581

Query: 428  SILTSLLNA----IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                         +   + F A         A+F    +   R   A             
Sbjct: 582  LFAGQGSQRPGMGLQLADAFPAFRAAFDSVCAEFDRHLEVPLRRVIAAPDGTPEAALLHR 641

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
                  +L     A  +           L               +  +T   T    +  
Sbjct: 642  TAYTQPALFAYETAAFRLLESWGVRPDYLLGHSIGEIAAAHTAGVLSLTDACTLVAARAR 701

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                L               +  +                  +      +    +   A 
Sbjct: 702  LMQELPAGGAMVAIEATEAELATEAEEAGETGRVAVAAVNGPNATVIAGDEEPVLAVAAR 761

Query: 604  EWID-----IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
                      +       + +      +   +  +L     +   +           +  
Sbjct: 762  WHAKGRRTKQLRVSHAFHSARMDGMLDAFREVAESLTFHAPDIPVVSNLTGQLADPDELR 821

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA-----S 713
              + ++     +       E+        F           T   R             S
Sbjct: 822  TADYWVRHARHTVRFADGMERLSELDVTTFVEL--GPDATLTTMARGCVDDPEPAFVPLS 879

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP---------KPFPPLE 764
            R   R                G      T  L     +                P P   
Sbjct: 880  RRDGRSEADDVLAAVATAYTHGVAVDWSTALLPTGAARVPLPTYPFQRRSHWLAPRPSAG 939

Query: 765  AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
            +  R  S         DP+A                +       G   H+    ++    
Sbjct: 940  SVVRELSPGRELSDGADPFAEETGASSPDSPARSKAESWRNRLTGRDAHDGRRLVLDLIR 999

Query: 825  NKNTPEINHLMKQIIDSHFEKENL 848
             +    + H     ++      +L
Sbjct: 1000 TEAAALLGHDSPDAVEERLAFRDL 1023


>gi|86740218|ref|YP_480618.1| tetratricopeptide TPR_4 [Frankia sp. CcI3]
 gi|86567080|gb|ABD10889.1| Tetratricopeptide TPR_4 [Frankia sp. CcI3]
          Length = 1326

 Score = 40.7 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 65/640 (10%), Positives = 150/640 (23%), Gaps = 69/640 (10%)

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA--GSTGSIPATARLM 246
           + A   +   L +L  S P   +  L+  E  +        ++ A      S        
Sbjct: 281 RAAFHAFRPVLADLCGSDPEAQRSFLIGLEIPYKAVYAYEEVLAAFQEDPASRLGVQAAY 340

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK--LLDFLD 304
             +A    GA +                 E+       +      P+       L+  L 
Sbjct: 341 RMLAGELAGAPIDARPVPPQDRERVLRDFEQYGPPAPRSVAIFGAPEDRPWADWLVSVLG 400

Query: 305 IKREDVKRLGNVS------NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
                ++ L  ++        +    ++ S    P    +    + ++ +I         
Sbjct: 401 ATGVRIRPLPPMALTPADFPAVESLIVIGSPHLGPDTPGESLVREQIQTRIRQRGSRAGV 460

Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
           V +       + A   A  + +     +    ++     L            +     A 
Sbjct: 461 VVVEVGSMRLDSAYHGAEIISLPARNERDAGVVVLEGLGLPVPRARLDDLRVVAPRYPAR 520

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
            P   ++ +                         P          L          +   
Sbjct: 521 RPRFWSVPARFA---------------------QPFVGRHAVLDELRDRLLPGGRPSGLC 559

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                D +   ++  +      ++  + HW   +S  D       +  + + + P     
Sbjct: 560 PLLGPDGVGKSAIAAEYAHRFDSDYDIVHW---ISAGDAASVRAGLRDLAERLRPGSDVP 616

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
                     S S+  +              R L       + +TL+ L       G  +
Sbjct: 617 DA------QRSPSEQLERVALDALRQGDPSARWLLVYDGAADPRTLAGLLPVPTGNGHVL 670

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
             +A    D                +   L++     +    F    L  + E       
Sbjct: 671 LTSADPAWD---------------SEPGALWVDPFTPAESRAFLRRWLPEVGEDRLATIA 715

Query: 659 AKNPFLSRVMQSDLNLKTAEKY------IGQAAHDFEMANGTRH-----LIYTRSLRENN 707
            +       +++ +     ++           A+  ++A          + +      + 
Sbjct: 716 ERLRHQPSGLRTAVGRLRQDRRGVPVDDRAVDAYLTQLAGVAPEQATWTVSFETLRTSDR 775

Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
               A+  L  L                   L   R L           P   P L A+ 
Sbjct: 776 ATRRAAARLLELCAFLAPQGVPLALLESPVML---RHLAEAVGDDAIADPTVLPELWAEI 832

Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
           R    +E+  + +  + + AR    L       +     +
Sbjct: 833 RKPRLAEVDTVPDGQFRLAARWQRLLVERMQPAERTAARE 872


>gi|164661289|ref|XP_001731767.1| hypothetical protein MGL_1035 [Malassezia globosa CBS 7966]
 gi|159105668|gb|EDP44553.1| hypothetical protein MGL_1035 [Malassezia globosa CBS 7966]
          Length = 2915

 Score = 40.7 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 57/678 (8%), Positives = 143/678 (21%), Gaps = 62/678 (9%)

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS--THPQYS 295
               A A     + +  +  +  P L              ++     +         P   
Sbjct: 883  LEHAQAHWFDALGSCVDAVLKQPRLSVAQRALELRERHVETHAPLWTAVPAPVIQAPLRR 942

Query: 296  LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
            +   +            L  + +                   +           P  ++ 
Sbjct: 943  IQAAMANAHAYAAQWLELQMLWDAEPESIAPADDIEAWLLLMERMRATRTFVDAP-ARRA 1001

Query: 356  FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
            F  V +        +A   A           K +A+I+                   +  
Sbjct: 1002 FGLVQIDATP---AQARIAARLDAWQAALLTKWAAVISTSMRDMHERLARGRAELEPLSA 1058

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
            +       T  S ++T +  A     D  A       PL +     +   +A        
Sbjct: 1059 T------HTSTSHVVTLITRAAALRQDVRA-----CEPLVQRLVQAQASLQAYR------ 1101

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                +   D + ++ +     A  +  +          E  +         + + +  L 
Sbjct: 1102 ---FRWPADWLYVEQVQGAWSALAELLSQKQAAIEAQHEALQVRISSETRSVREQMDALQ 1158

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
               T +    G + +++  ++            +         +     S   +++    
Sbjct: 1159 EAWTRERPVSGGVPVAEALQVLGEFAARTTALHNTTRMLAEARDAFGLDSLDDARLTHVS 1218

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              I+     W  +       + +K        +  +      L+     +   +      
Sbjct: 1219 DEIQGLQTVWSALARIWAGLDELKSTPWSHVQVRHVRQRLESLVRDCRALPTRMRSYEAY 1278

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
            +               L    ++ +  +      M       +             A  W
Sbjct: 1279 ETVHDELQFLHSHVKLLGELKSDAFQARHWRALHMRLQAPRYV---PSTHTLGAVWALDW 1335

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP-------- 767
               L V+         +     YL   R++                 L            
Sbjct: 1336 RAHLRVIQAAVADAQGEYALDMYLQQVREVWTGYALELVDYRHECMLLRGWDALFLQANE 1395

Query: 768  -----RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
                 R  S S   ++  +   ++  R+ ++  +     D  R       H +      +
Sbjct: 1396 HAGGLRAMSASPHYRVFEEEARMWEDRLARIQTVFDLWADVQRQWV--YLHGVFGSGSAE 1453

Query: 823  RINKNTPEINHLMKQIIDSHFEKEN------------------LPPHIDIIWRHLFHKIS 864
            R+    P  +   + +                                     H      
Sbjct: 1454 RMMHILPVESTRFQSMSSEFLALLKKVLKSPYVLDVVGVPGIQASLERLAELLHRIQTAL 1513

Query: 865  HSFLEHEEKIQSSIEKIF 882
              +LE E         + 
Sbjct: 1514 GEYLEKERARFPRFYFVG 1531


>gi|297204729|ref|ZP_06922126.1| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
 gi|197710804|gb|EDY54838.1| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
          Length = 879

 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 55/541 (10%), Positives = 127/541 (23%), Gaps = 31/541 (5%)

Query: 111 ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL-AKNLADIIDIIETEEKKWED- 168
            L +       +L   +++     P       A       + LA ++D  E E K+ +D 
Sbjct: 48  RLLQQSGTEPEELRAAVREELSRRPKVTGPGAAPGQVFVTQRLARLLDEAEREAKRLKDE 107

Query: 169 -------LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                  L AL  E              +    +   L ++        ++     E  +
Sbjct: 108 YVSVEHLLLALAEEGSATAAGRLLKEHGVTRDSFLGALTQI----RGNQRVTSANPEVAY 163

Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
                 G  ++A          RL   +        V   L                   
Sbjct: 164 EALEKYGRDLVAE-----ARAGRLDPVIGRDAEIRRVTQILSRKSKNNPVLIGDPGVGKT 218

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
                      +  + + L    +   D+  L   +         +         +  R 
Sbjct: 219 AIVEGLAQRIVRGDVPEGLRDRTVFALDMGSLVAGAKYRGEFEERLKAVLSEVKAAAGRI 278

Query: 342 TDILENK-----IPNIQKCFSDVALIEADNEREEAISI-AIALRMSLDENKKKSAL---- 391
              ++           +       +++    R E   I A  L       +K +AL    
Sbjct: 279 LLFVDELHTVVGAGAAEGAMDAGNMLKPMLARGELHMIGATTLDEYRKHIEKDAALERRF 338

Query: 392 --ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
             +  D          L      +++  G+ +  T   +  T     I           L
Sbjct: 339 QQVLVDEPSVEDTISILRGLRERLEVFHGVKIQDTSLVAAATLSHRYITDRFLPDKAIDL 398

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI-MDLKSLVLDRIATQKNNTHVPHW 508
           V    A+       +    + +     R       +  +       R+   +        
Sbjct: 399 VDEACARLRTEIDSMPAELDEITRRVTRLEIEDAALSKETDPASKARLEELRRELADLRG 458

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
           ++       E     +  + +    L   +           ++   +L    LQ++    
Sbjct: 459 EADAKHAQWEAERQAIRRVQELRQELEQVRHEAEEAERTYDLNRAAELRYGRLQDLERRL 518

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
             +   L  ++    L        E    + A     +  +      + ++        +
Sbjct: 519 AAEEEQLASKQGQNRLLREVVTEEEIAEIVAAWTGIPVSRLQEGEREKLLRLDDILRERV 578

Query: 629 F 629
            
Sbjct: 579 I 579


>gi|188574781|ref|YP_001911710.1| glutamate-ammonia-ligase adenylyltransferase [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|188519233|gb|ACD57178.1| glutamate-ammonia-ligase adenylyltransferase [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 910

 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 66/605 (10%), Positives = 134/605 (22%), Gaps = 28/605 (4%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           ARL       L +   + +             A  +A + A +    + E + WE    L
Sbjct: 169 ARLGQQLARLLDEATAEGFSHRVDLRLRPFGTAGRVALSFAGMDQYFQREGRDWERYAWL 228

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH----------- 221
           K             +L+    +   R ++  A   +    A + AE              
Sbjct: 229 KARAVAGAIDAGEAWLETLRPFVYRRYLDFTALDGLREMKAAITAEVARHDCLDDIKRGP 288

Query: 222 -----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                +    +   +I G         RL+  +        +       + TA       
Sbjct: 289 GGIREIEFLAQSLQLIRGGREPSLRERRLLPALRALVTAGQIDQENGQALTTAYRFLRRL 348

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +      PQ  L +    L +   +   L +       R        L P  
Sbjct: 349 ENRLQMLRDAQTHALPQAPLDRERIALGLGYAEWATLLDALAPQRARVTAEFAELLAPRV 408

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                  + +          + +A +   +      ++A     S       SA      
Sbjct: 409 RATAPDTLADYWRALPAGDAAPLAGMGLSDPGGAHQALADFAHSSGVRGLSDSA----RA 464

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L R +   L          A +P    L  + L              A+A LV      
Sbjct: 465 RLDRVMPALLHAATRASQPDAAVPRMLGLLQATLRRTSYLSLLDEQPSALARLVDVLSRS 524

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
               E+  +      EL+  R +    D   L +   D +        +     R     
Sbjct: 525 ALLAERLAAYPLLLDELLDTRISGPLPDRAALHAACADIVHIDDTEAALRELNERRLARS 584

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT--------CLQNVCLDE 568
             +A+  +D   Q +           +    +      ++                    
Sbjct: 585 FRIALATLDGRQQAVESTRQLAWLAEAVVQTVLHLARIEMVAAHGYVSGGSFAIIGYGSL 644

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                    + +   L     ++  +       A  W   + + +               
Sbjct: 645 GGMELGFGSDLDLVFLYDHPPEVDASDGKRPLEAGRWFARLAQKVMALLAAETGAGRLYD 704

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +              L    E    +            ++            Q     
Sbjct: 705 IDVRLRPDGGKAALVSSLASYREYQRERAWTWEHQALVRARAVAGDAVLCDAFAQVRRYT 764

Query: 689 EMANG 693
            M   
Sbjct: 765 LMRVR 769


>gi|115361214|ref|YP_778351.1| amino acid adenylation domain-containing protein [Burkholderia
            ambifaria AMMD]
 gi|115286542|gb|ABI92017.1| amino acid adenylation domain protein [Burkholderia ambifaria AMMD]
          Length = 3018

 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 46/520 (8%), Positives = 116/520 (22%), Gaps = 29/520 (5%)

Query: 377  ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG----IPLSTTLHSSILTS 432
             ++  +D+ +    ++        ++   +     ++++S G      L        L  
Sbjct: 1109 WIQEVVDDPEIPIGVV---EIGRDQLAQHVAHAHASLNLSDGPVVRADLFRVDEGRSLRL 1165

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
            LL A   + D ++   L++         + Y           A  G   +     +    
Sbjct: 1166 LLVAHHLVIDGVSWGALLETVY------DAYTRLRHGQAPEFAGGGATWTAWTRAISDWA 1219

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
                A           ++ L     + A     + +     +V       +     +   
Sbjct: 1220 GSGAADADLAHWQALARATLPGLPLDRAATAAANSVSSAETIVVELGESATAALLGAAPR 1279

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                 +  +    L       +   +      +    ++I        +    +   T L
Sbjct: 1280 AYDAQINDVLLAALARAVGDWSGCADVLVDLEAHGREELIAD-----LDISRTVGWFTSL 1334

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                             +              +  GL          +   L   +    
Sbjct: 1335 FPVVLTVDAGSHDPARLVASIKTQLRAVPSAGLTYGLLRDRLDGPVPRPRLLFNYLGQTD 1394

Query: 673  NLKTAEKYIGQAAH---DFEMANGTRHLIY-TRSLRENNIPTIASRWLQRLLVLGGTDFF 728
             +  A +   QAA    D   AN  R  +    +    N   +A  + +           
Sbjct: 1395 QMLNAARDWKQAAEPSGDGRNANQLREHLLDVNAYVTGNRLHVAWEFSRACHDADTIRRV 1454

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
             +        L     +   + QP   +P    P                +         
Sbjct: 1455 AHAYIAALEALVADHAVQSASAQPASGQPANALPQALASVIPDEIADVYALTPTQQGMLF 1514

Query: 789  RILKLDFIPHFKKDPDRTDRGTL----FHNIITELIKKRINKNTPEINHLMK---QIIDS 841
              L       +    D    G L    F      +  +     T      ++   Q++  
Sbjct: 1515 HGLYEPASDAYFSSLDFRIDGALDVERFRRAWETVAHRHDILRTSFHWEEIESPVQVVHR 1574

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
              +       +         +   +++  +        + 
Sbjct: 1575 RIDLPWHDEDLRAASAEEAERRWAAYVAQDRARGFDFTRA 1614


>gi|297530631|ref|YP_003671906.1| chromosome segregation protein SMC [Geobacillus sp. C56-T3]
 gi|297253883|gb|ADI27329.1| chromosome segregation protein SMC [Geobacillus sp. C56-T3]
          Length = 1187

 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 86/803 (10%), Positives = 206/803 (25%), Gaps = 28/803 (3%)

Query: 99   LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
            ++  +  +Q++L LA   L       +++K+    +             LA     + + 
Sbjct: 279  IDESIDGLQQVLLLASEELEKLEGRKEVLKERKKHAARRKAQLDDITAALAAKRRRLTEQ 338

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
            +  E ++   L A             A F    +    E          + ++ A ++ E
Sbjct: 339  LHAEREELARLEAGAAALERELKEKQALFSAHEADIEEEIERRKGDYIDLVHEQAALKNE 398

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
              H+ +      + A  T    A  R ++           L      +  A+      ++
Sbjct: 399  RAHVEQAISK--LHAKRTALDEANRRHLAEREQLEQKRAALWAEQTRLEQALTEAHNRQA 456

Query: 279  TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                +     +   Q+    LL      R+  K           R   + +         
Sbjct: 457  ALAAALAAQKTELEQH--EALLHQARQYRQQTK----------ARQQWLEEMQHDYSGFV 504

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-----DENKKKSALIT 393
                ++L+ +        + V LI   +  E AI  A+   M       ++  +++    
Sbjct: 505  QGVKEVLKARDLLPGIHGAIVELIRVPDRYETAIETALGGAMQHIVVDSEQAARQAIHYL 564

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  R   L L                    + +  +     +      AIA L+ H 
Sbjct: 565  KTNGYGRATFLPLDVIKARALSERERAAIDRHPAFVGIASELVEYDRAYRAAIAHLLGHV 624

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            +                      R    + D   +              T     ++R  
Sbjct: 625  IVTADLKGANELAKLLH-----YRYRLVTLDGDVVSPGGAMTGGGAAKKTASLLSRNREL 679

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            E        + + I +    +                +   +      + +   +  +  
Sbjct: 680  EMLSAKLQEMDETIARLERAVAA--KRHELAEQEAQAAALQEEVAALREALQRQKDEQRE 737

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
              W ++      +L+ +         A     +  I R ++    K +        +   
Sbjct: 738  LEWQKKRIDERLALYDEEKANDEREMAELNRRLGAIDRQLEQLAEKLQTIDDDISRLQAQ 797

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++     + L      + +    T +    +R    +   + AE   G    + E A  
Sbjct: 798  KQTEQTTKEALQAAITEQKIALAETKERVKHARRKVEEWEAELAETIRGLKEAERERAAL 857

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
               +       E        +   +   L         +   Q  L+   +    TK+ H
Sbjct: 858  DAEMEAPEWNEEEIEQLRKQKLEDKQKTLELIASRREQRLDFQRRLEHLEQEWKETKRQH 917

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
             +        E +           L+                 P      +   R  L  
Sbjct: 918  KQLADVVKDEEVKLNRLDVELENLLVRLREEYGLSFEAARSAYPLEIGADEARKRVKLIK 977

Query: 814  NIITELIKKRINKNT--PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
              + EL    +        ++   + + +   + E     +  +   +  ++   FL   
Sbjct: 978  RAMEELGTVNLGAIDEYERVSERHRFLSEQKTDLEEAKATLHQVIDEMDEEMKKRFLTTF 1037

Query: 872  EKIQSSIEKIFVNIPAKMAIESI 894
            E+I++   ++F  +      +  
Sbjct: 1038 EQIRAHFGEVFGELFGGGRADLR 1060


>gi|152965147|ref|YP_001360931.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
 gi|151359664|gb|ABS02667.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
          Length = 701

 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 58/573 (10%), Positives = 132/573 (23%), Gaps = 68/573 (11%)

Query: 46  SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105
            V     T RA  E+R+   ++           ++       +       S         
Sbjct: 64  RVLAVTFTARAAGEMRTRLRDLGVAGV----QARTFHAAALRQLQFFWPQSIG------- 112

Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165
                 L  L+      + D    L   +  +     +  +   K               
Sbjct: 113 ----GTLPNLVEHKAPLIADACNRLRIPADRTRVRDLSAEVEWTK----------VMLVD 158

Query: 166 WEDLHALKNEKYGMWWLLA-ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223
            +D   +                +    + + +   +          +       E    
Sbjct: 159 PDDYVRVAAAAGRGEPGGLDLASVARLVRTYEDVKTDRAVIDFEDVLLLTAGILDERPDV 218

Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
               +      ++       P   RL+           V+   D       +   T +  
Sbjct: 219 AATVREQYRHFVVDEYQDVSPLQQRLLDLWLGGRQDLCVV--GDASQTIYSFAGATPEHL 276

Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
                      HP  ++ +L+       E V    +V +   GR                
Sbjct: 277 LDFPRR-----HPGTTVVRLVRDYRSTPEVVGLANSVLSMATGR-----------HAQAR 320

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397
                     P         +    D++  EA  +A  +   +   +  K  A++     
Sbjct: 321 LELIAQRPSGPPP-------SFTAYDDDVAEASGVAARIAAEVRAGRSAKDIAILFRTNG 373

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            ++ ++  L   G+   +  G    +         LL          A A L  H L   
Sbjct: 374 QSQALESALADAGVGYVVRGGERFFSRKEVRDAIVLLR-------GGARAALPGHDLGTE 426

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                 +  +    E     G         L++LV+      +               ++
Sbjct: 427 TRA---VLSSAGWDEKAPTAGGATRERWESLQALVVLADELAEKRPGAQLSDLVDELVER 483

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
             A          +      K  +      + +S+             ++E R+L  +  
Sbjct: 484 SQAQHAPTVDGVTLASFHAAKGLEWDVVFLVGVSEGLLPISFAETPDDVEEERRLLYVGV 543

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
               + +   ++     G         ++D + 
Sbjct: 544 TRAREGIHLSWANSRTPGGRATRKPSRFLDAVR 576


>gi|297704816|ref|XP_002829290.1| PREDICTED: spectrin beta chain, brain 3-like [Pongo abelii]
          Length = 2472

 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 44/478 (9%), Positives = 108/478 (22%), Gaps = 64/478 (13%)

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS------LAKLLDFLDIKRE 308
              +V            W  + E +              Q+       L  L D   +   
Sbjct: 681  VHLVGLAERAASARRRWQRLEEAAARRERRLQEARALHQFGADLDGLLDWLRDAYRLAAA 740

Query: 309  DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----DVALIE 363
                    S+    R        +      +         +              V ++E
Sbjct: 741  GDFGHDEASSRRLARQHRALTGEVEAHRGPVSGLRRQLATLGGASGAGPLVVALQVRVVE 800

Query: 364  ADNEREEAISIAIALRMSLD--------------------------------ENKKKSAL 391
            A+    E   +A   R  L                                 ++     +
Sbjct: 801  AEQLFAEVTEVAALRRQWLRDALAVYRMFGEVHACELWIGEKEQWLLSMRVPDSLDDVEV 860

Query: 392  ITADRNLARRVKLELTRFGINIDIS------AGIPLSTT------LHSSILTSLLNAIFK 439
            +        +    L    ++++ +       G P S          +S    ++  + +
Sbjct: 861  VQHRFESLDQEMNSLMGRVLDVNHTVQELVEGGHPSSDEVRSCQDHLNSRWNRIVELVEQ 920

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
              + M+   LV++ + +       +   + A+E     G    + +  L++ +      Q
Sbjct: 921  RKEEMSAVLLVENHVLEVAEVRTQVREKRRAVESAPRAGGALQWRLSGLEAALQALEPRQ 980

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-----KNSTCGNLSISDWT 554
                      +              + +      L +           +      + D  
Sbjct: 981  AALLEEAALLAERFPAQAARLHQGAEELGAEWGALASAAQACGEAVAAAGRLQRFLHDLD 1040

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                  ++        + P     EE   L +  + + E     + +    +     L+ 
Sbjct: 1041 AFLDWLVRAQEAAGGSEGPLPNSLEEADALLARHAALKEEVDQREEDYARIVAASEALLA 1100

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
             +      E    L +   L    L +  L+                    R ++  L
Sbjct: 1101 ADG----AELGPGLALDEWLPHLELGWHKLLGLWEARREALVQAHIYQLFLRDLRQAL 1154


>gi|288965950|gb|ADC79616.1| BafAI [Streptomyces lohii]
          Length = 4884

 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 62/669 (9%), Positives = 135/669 (20%), Gaps = 33/669 (4%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
            AP +P   ++          +     P     +    +    +R  + L           
Sbjct: 4199 APGAPAPHDVPQGASGEPSGDTGATVPWLLSAMTPAAL----RRQARRLGEHLRAHPDGG 4254

Query: 72   STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
                               A    +           R   L RL  +   +         
Sbjct: 4255 IAGPARAL-----------ATTRPALPFRAAAIGRDRDALLGRLDALAAGEPAPDTVRDR 4303

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
                 ++ + P      A      +D         E                    L   
Sbjct: 4304 ARGGRTVFVFPGQGSQWAGMAVAALD-------ASEAFATAVAACERALAPHTDWSLTEV 4356

Query: 192  SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
             +                   A+M A A H       P  + G +    A A +   ++ 
Sbjct: 4357 LRGAPGAPALDRVDVVQPVLFAVMVALAAHWRDTGITPDAVVGHSQGEIAAACVAGALSL 4416

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI----KR 307
                 +V       +  A    +   + +   +           +A +     +    + 
Sbjct: 4417 DDAALVVALRSRALLKLAGRGGMVSVAASAERTTRLLPAGGGVCVAAVNGPRAVVVAGEP 4476

Query: 308  EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
            +++  L    +    R+  I   +           D L   +  I+   S V +      
Sbjct: 4477 QELAALIAACDREGIRAKAIPVDYAAHSAQVAEIEDELREALTGIRPHASAVPIHSTVT- 4535

Query: 368  REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
             E     ++         ++      A R L             +  + AGI        
Sbjct: 4536 GEPVAGESLDAAYWYRNLREPVGFAEATRTLLEAGHTLFVEVSPHPVLLAGIEEVAAEAG 4595

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
              ++++            +   +    A  G P  +      A           +Y    
Sbjct: 4596 REVSAVGTLRRGDGGRDRLLASLTEAWAAGGGPVDWSPWTGTAEPGGPSPLPLPTYPFER 4655

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL------LVDHILQCITPLVTYKTNK 541
             +  +     T                   E          L D     +          
Sbjct: 4656 DRYWLPTPGRTASTVAPTEKTAEATGAVTAEAKAEGTVEAPLDDDRTPAVRLAARLAPLD 4715

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                    +    +     L +      R   +         L+  F   +   + +   
Sbjct: 4716 RQARRQAVLDLVIRHAAAVLGHSGAGPVRPERSFSEVGFDSMLAVRFRNGLCEATGVAVP 4775

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                 D  T       +  ++  +         E   L      +     G        +
Sbjct: 4776 PTAVFDHPTPDALATYLDAELSAAPGPPSPLLAELDRLAALLAAVPPGAAGTEGVGRRLD 4835

Query: 662  PFLSRVMQS 670
              L    + 
Sbjct: 4836 ELLRGWDRR 4844


>gi|302870676|ref|YP_003839313.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
 gi|302573535|gb|ADL49737.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
          Length = 1061

 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/367 (9%), Positives = 83/367 (22%), Gaps = 38/367 (10%)

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            +   LR S D    +   +  +   +  +     +      +  G  L           +
Sbjct: 720  VGYFLRFSQDFTDARLVRLNRNYRSSAPILAAAVQAIAPSSLVRGRRLDPARLDPEAPLV 779

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                       A               E     +  +L+   + G   S    D+  L  
Sbjct: 780  GRYAASSAYDEA-------DFVVRTVDELVGGLSHRSLDSGRIDGRTTSLSFSDIAVLYR 832

Query: 494  DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
                       +      + +   +               +            + S++  
Sbjct: 833  TDAQAAPIVDALARANIPVQKRSHDRLRDRP--------GVPAIARELRHAGLDGSLAAR 884

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
             +     L                 E+ +T   L + +            +    + +L 
Sbjct: 885  VRQAGQILAERFAVPTLDGSGAVRPEDVRTAVDLLTPLARRCGD------DLDLFLNQLA 938

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
             G  V     ++  + +L    ++ L F  + L G  +G+ P     +            
Sbjct: 939  TGAEVDALDPRAEAVTLLTLHAAKGLEFPVVFLVGAEDGLLPLRWPGSE----------- 987

Query: 674  LKTAEKYIGQAAHDFEMANGTRHLIYT-----RSLRENNIPTIASRWLQRLLVLGGTDFF 728
                +    +    F      +  +Y      R+       T  S +L  +         
Sbjct: 988  -PDDDAVAEERRLFFVGLTRAQDRLYVSHAGRRARHGAERDTRPSPFLDVIDPALFERLD 1046

Query: 729  DNLKKRG 735
                +R 
Sbjct: 1047 ATEPRRP 1053


>gi|302867260|ref|YP_003835897.1| acyl transferase [Micromonospora aurantiaca ATCC 27029]
 gi|302570119|gb|ADL46321.1| Acyl transferase [Micromonospora aurantiaca ATCC 27029]
          Length = 1816

 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 44/485 (9%), Positives = 86/485 (17%), Gaps = 17/485 (3%)

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS----NEMYGRSMVISKSFLPPD 335
              T      +T P Y  A L   +         L   +        GR +          
Sbjct: 757  TGTWITEAQATDPAYWAAHLRRPVRFGACVATLLAEGTWALVECGPGRQLANLARMQVAK 816

Query: 336  TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395
              + +        +P   +   DVA +           + ++L       +        +
Sbjct: 817  AGEAQRALTPLGSLPGPGEQTGDVAALLGTAGALWCAGVPVSLPADPHARRVPLPTYPFE 876

Query: 396  RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
            R                   +   PL                      +  A  +   L 
Sbjct: 877  RRRYWIDPDPEQEVAAAPAETGPRPLPEWFAVPAWRQA--------PPVRTAEPLGRCLV 928

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
                P      A            +         +    R   + +   +          
Sbjct: 929  LADGPRGEALVAALRAAGDDPVEVRAGEAFTATANGFRLRPGVRADAEELVAALGADLPR 988

Query: 516  DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575
                A  L D       P   +   +    G L +               +        +
Sbjct: 989  RIVHAFAL-DGEPAGTDPAAAWAAQERGFFGALHLVQALAGAGVTADEAGVRLDLVTAGI 1047

Query: 576  WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635
                         + +      + A        +            +       +     
Sbjct: 1048 GDVRGDDLTRPEHATLAGLARVLPAELPGLTVRLLDTDPAARGVAALVAELRSPVDAEHP 1107

Query: 636  SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
               L  D   L G  +              R     L            A DF      +
Sbjct: 1108 EVALRGDRRWLAGYEQVTVAAEDEPGVL--REEGRYLITGGLGGIGVTLAEDFARRVRAK 1165

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
             ++  RS         A   +       G        ++  G   L     +        
Sbjct: 1166 LVLLARSGLPERDEWDAHLAVHGGADRAGRAIAAIRRMEAAGAEVLVLAADVTDADDLRR 1225

Query: 754  YKRPK 758
             +   
Sbjct: 1226 VRDEA 1230


>gi|297560850|ref|YP_003679824.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845298|gb|ADH67318.1| transcriptional regulator, LuxR family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 929

 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 60/613 (9%), Positives = 137/613 (22%), Gaps = 37/613 (6%)

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA--TARLMSTVANHP 253
              L EL  +S      A   +     +      +  A       A   A L+    +  
Sbjct: 236 PLALTELTRASAAHDAAAGPPSPGPLPLTDHLEGVFAARLNDLPAASGQALLLLAAMDSV 295

Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK-- 311
           + A+V      H     W           +       HP    A         + +    
Sbjct: 296 DSAVVASVGLPHAGDDAWLPAERAGLVRRTGRGVRFRHPLARSATYHAASPASQREAHLA 355

Query: 312 -------------------RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
                               LG  +           ++      +   +      ++   
Sbjct: 356 LAGILRDEPDRRAWHLAAACLGPDAAVSAELERTADRARRRGGHAAAASALRRAAELAPR 415

Query: 353 QKCFSDVALIEAD--------NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
           ++  + + +  A         +  EE  + A A           +A +     L  R  +
Sbjct: 416 REDRARLLVEAASAAVFTGDISWVEELAAEARAHTEDPSLLASVTAQVGRLAVLTVRHTV 475

Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464
             +R   + + +A      +  ++ L  L +A          A   +        P    
Sbjct: 476 VFSRLVRSAEQAAV-----SRPATALDLLADAAVVRFYSGEDAQRRRIRAVLERLPGDAS 530

Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
                A         +   +++ L   ++     Q +        + L +E  +      
Sbjct: 531 HAWPRAWVRAVSDPFEGRAELLSLLPRLVCEAERQPDRLTALAVMAWLLDETPQAVRAFD 590

Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
           +   +  +     +  + +   +                      R   +          
Sbjct: 591 EAFDRWKSQGPLPEGLEGAAAWSYVEQGRWDRAREACARTAAVGARAGLDHAVACAAAVE 650

Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644
           +++ +   +T +        +  I        +V  +    +     G  E       T+
Sbjct: 651 ATVLAYQGDTAAARDRVGDVFALIDPMESRSVSVYARRALGAAAVAEGGYEDAYDQLRTV 710

Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704
                    +  +      L+           A   +G+ AH        R        R
Sbjct: 711 FTSDGAPVHYHASYPALADLAAAAARSGRRAEAAAIVGRCAHALADGASPRLRALISRAR 770

Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
                   +    R   L          +R Q  LD    L    +    + P       
Sbjct: 771 ALLADPEDAEAHFR-AALVDPRLERWPFERAQTLLDLAEWLRRRRRVTEARGPLTEALEV 829

Query: 765 AQPRTYSFSEIKQ 777
            +         + 
Sbjct: 830 FRRLGARPWIERA 842


>gi|190576450|ref|YP_001974295.1| putative exodeoxyribonuclease V beta chain [Stenotrophomonas
            maltophilia K279a]
 gi|190014372|emb|CAQ48020.1| putative exodeoxyribonuclease V beta chain [Stenotrophomonas
            maltophilia K279a]
          Length = 1226

 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 99/864 (11%), Positives = 207/864 (23%), Gaps = 112/864 (12%)

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                   AL  E+       A DFL       T+RL  L  +  V     L+   A  L 
Sbjct: 324  APLARYVALLAERDAWLRGTALDFLHTLRAEATQRLQALKRTRRVQTYDDLIDGVALALE 383

Query: 224  KGTKGPII-----------IAGSTGSIPATARLMSTVANHPNGAI-------VLPGLDCH 265
               +  ++           +     +      +  TV               +    D  
Sbjct: 384  GPQRLTLVRQLRAQYRIALVDEFQDTDDRQWGIFHTVFGDSPEVRELGLAPALFLIGDPK 443

Query: 266  IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                 +      +          +     +       L   +      G  +        
Sbjct: 444  QAIYGFRGGDIHTYLKAKQVAQQAPVLDQNFRSRPSVLRALQALYDNGGEDAFLERDIRF 503

Query: 326  VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA-----ISIAIALRM 380
               +       +D          +            + AD  R+ A      +I   L  
Sbjct: 504  ERVRPGGVRSDADYLRDGQAAKALTLRVLRSGGDKAMSADASRDAATQACVAAIHQILVD 563

Query: 381  SLD---------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
            +                 A++      A  V+  L   GI    +    L  T  +  L 
Sbjct: 564  ARAGNAVLRGRPVQPGDIAVLVRSHREATLVQRALAAVGIPAVAAGKQSLFATAEARDLR 623

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
            +LL A+ +  D   +   +   L             +  L+        +  +       
Sbjct: 624  ALLLALLQPADEGRLRAALATVLLGQRASAIAAMEREGDLQRGFQAQLLHWRERWQ---- 679

Query: 492  VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
                              + +     E  + L+D   +    L   +  + ++   L + 
Sbjct: 680  ----------RGGPFAVIADVCAAQGERLLALIDGERRLTNYLQLGELLQEASAQALGMH 729

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                     + +   D+ ++L  L  +          ++ ++  +  K+  +E+  +   
Sbjct: 730  GLLDWLQGQMASADQDDEQQLLRLESD----------ARRVQIITLHKSKGLEYPLVFLP 779

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
             +  +   P      T+ + G  +              N     +  A++  L       
Sbjct: 780  FVGIDGGAPNTASHCTVHVGGQRQLHWKLDKDEAWEAANAQREREQRAEDARLLY----- 834

Query: 672  LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
            + L  AE  +  A  D      TR       L+                          +
Sbjct: 835  VGLTRAEHALWIAVGDLAGLGRTRLAPLLGDLQALRAHADVHID-DSEAPAALPQLAAEV 893

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND-PYAVYARRI 790
            +         TR++ +      + +              + +E+     D P        
Sbjct: 894  EGDLPAVRALTRRVPHDWWVYSFTQLAHADAGAGSDIEAAATELPAPAADEPAGPELPLE 953

Query: 791  LKLDFIPHFKKDPDRTD-------RGTLFHNIITEL-------IKKRINKNTPEINHLMK 836
              L       +D    D        G + H  +  +        K        + + L K
Sbjct: 954  PALPEPTAVVEDSAPIDPRFMGSRFGNVLHEAMENVDFAAWGDWKPGREAPEGQADVLRK 1013

Query: 837  QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
             + D  +   +L   + ++   + H ++    E          +    I    AIE   +
Sbjct: 1014 ALHDEGYADVDLDDGVAVLVPLVGHTLTVPLPEGGALHSLGEGERRAEIDFHFAIEPTTV 1073

Query: 897  H---------------------------LTGFADRIDLLKSGFVDITDYKTGDNPKKET- 928
                                        +TG  D +  ++ G   + DYK+   P     
Sbjct: 1074 PALLQVLHAHGVSSGRRGFGQRRRLEGLMTGMID-LTYVRDGRWYVLDYKSNRLPGYSQD 1132

Query: 929  ------AQKLIDPQLSLEAAALKA 946
                       D Q  +   AL  
Sbjct: 1133 LLAIAMRHSEYDLQALIYTVALHR 1156


>gi|159039648|ref|YP_001538901.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
 gi|157918483|gb|ABV99910.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
          Length = 719

 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 58/593 (9%), Positives = 137/593 (23%), Gaps = 64/593 (10%)

Query: 28  GTLVENFRYDPLNPLLLASVTI-YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86
             +     +  L   +L+   +    T RA  ELRS    +           ++      
Sbjct: 41  RAVTSRIAHRALTGEILSRHLLAVTFTARAAAELRSRLTALGVPGV----QARTFHAAAL 96

Query: 87  EK---FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            +   F   LL    +   + +  RL+ LA                       +  +   
Sbjct: 97  RQVRYFAPRLLAGRAMPELLDSKVRLVTLA-----------------------AAKVGIR 133

Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203
                 ++LA  I+  ++   +  +      +         A  +      + +      
Sbjct: 134 ADRTGTRDLAGEIEWAKSSLVEPGEYVVAAAKALRETPYEPAR-VADVFAAYEQVKRSGG 192

Query: 204 ASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
                    A +    EH       +      ++       P   RL+       +   V
Sbjct: 193 VIDFEDMLRAAIWGIEEHPDVADQVRAQYRHFVVDEYQDVNPLQQRLLEAWLGGGDDLTV 252

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
           +          I++     S+ +      + +     L +              + + + 
Sbjct: 253 VGDA----SQTIYSFTGATSSYLVDFPRRHRSATVVRLVRDYRSTPQVVGLANAVISPAR 308

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
               R  +      PP           E             ALI+A     E        
Sbjct: 309 GSEARLRLELVGQRPPGPEPDLRIFTDEPAEAAAVAARCR-ALIDAGTPARE-------- 359

Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                      A++      +   +  LT   +   +         +        L A  
Sbjct: 360 ----------IAVLFRTNAQSEVYEKALTEAEVPYQVQGAERFFERVEIRQAMVALRAAT 409

Query: 439 KLND---FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
           +       +  A +       +         A            + + +      +V   
Sbjct: 410 RSLPGGIPLPAAVVEALAAVGWAPDTPPAGGAARERWAALAALVQLAEEYAAAAPVVPIG 469

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            A            +      +  A          +  L + K  +      + +++ T 
Sbjct: 470 PAAAVERPATLADFTDELAR-RAAAQHAPTVEGVTLASLHSAKGLEWDAVFLVGLAEGTL 528

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            T+       ++E R+L  +      + L   ++     G   +        +
Sbjct: 529 PTLYAKTPEQVEEERRLLYVGITRAREWLWLSYASARSPGGRPRRPCRFLPRL 581


>gi|157875983|ref|XP_001686356.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68129430|emb|CAJ07973.1| hypothetical protein LMJF_34_2530 [Leishmania major strain Friedlin]
          Length = 4395

 Score = 40.3 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 77/781 (9%), Positives = 180/781 (23%), Gaps = 45/781 (5%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
             +A  +  +R K    ++       L +P  P  A           D         + + 
Sbjct: 1280 RVAEEVAAFRAKRNAALEARDAAGTLPVPSRPVPA-----------DEAAERALGPQQIA 1328

Query: 171  A-------LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                    L+        +          K   ER+ E  A+       AL   +A   +
Sbjct: 1329 DEPLYAVTLEEYLGKDAAVEQLAAELAEQKAEAERVAEEVAAFRAKRNAALEARDAAGTL 1388

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                 P+          A   L            V          A+     E +     
Sbjct: 1389 PVPSRPVPADE-----AAERALGPQQIADEPLYAVTLEEYLGKDAAVEQLAAELAEQKAE 1443

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            +         +   +              +              +    +  +       
Sbjct: 1444 AERVAEEVAAFRAKRNAALEARDATGTLPVPSRPVPADEAAERALGPQQIADEPLYAVTL 1503

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402
            +    K   +++  +++A  +A+ ER      A   + +     + +A      +     
Sbjct: 1504 EEYLGKDAAVEQLAAELAEQKAEAERVAEEVAAFRAKRNAALEARDAAGTLPVPSRPVPA 1563

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSIL---TSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
                 R        A  PL        L    ++     +L +  A A  V   +A F  
Sbjct: 1564 DEAAERALGP-QQIADEPLYAVTLEEYLGKDAAVEQLAAELAEQKAEAERVAEEVAAFRA 1622

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                   A++A   + +       D    ++L   +IA +                 ++L
Sbjct: 1623 KRNAALEARDATGTLPVPSRPVPADEAAERALGPQQIADEPLYAVTLEEYLGKDAAVEQL 1682

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
            A  L +   +           +      L   D         + V  DE  +      + 
Sbjct: 1683 AAELAEQKAEAERVAEEVAAFRAKRNAALEARDAAGTLPVPSRPVPADEAAERALGPQQI 1742

Query: 580  EGKTLSSL-----------FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              + L ++             ++    +  KA A    + +           +   ++  
Sbjct: 1743 ADEPLYAVTLEEYLGKDAAVEQLAAELAEQKAEAERVAEEVAAFRAKRNAALEARDAAGT 1802

Query: 629  FILGTLESRLLNFDTLILGG---LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
              + +            LG     +E ++     +       ++        +K   +  
Sbjct: 1803 LPVPSRPVPADEAAERALGPQQIADEPLYAVTLEEYLGKDAAVEQLAAELAEQKAEAERV 1862

Query: 686  HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
             +   A   +      +        + SR +              +       +     L
Sbjct: 1863 AEEVAAFRAKRNAALEARDATGTLPVPSRPVPADEAAERALGPQQIADEPLYAVTLEEYL 1922

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY-ARRILKLDFIPHFKKDPD 804
                              EA+      +  +   N       A   L +   P    +  
Sbjct: 1923 GKDAAVEQLAAELAEQKAEAERVAEEVAAFRAKRNAALEARDAAGTLPVPSRPVPADEAA 1982

Query: 805  RTDRG--TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                G   +    +  +  +        +  L  ++ +   E E +   +          
Sbjct: 1983 ERALGPQQIADEPLYAVTLEEYLGKDAAVEQLAAELAEQKAEAERVAEEVAAFRAKRNAA 2042

Query: 863  I 863
            +
Sbjct: 2043 L 2043



 Score = 40.3 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 81/811 (9%), Positives = 192/811 (23%), Gaps = 56/811 (6%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
             +A  +  +R K    ++       L +P  P  A           D         + + 
Sbjct: 1446 RVAEEVAAFRAKRNAALEARDATGTLPVPSRPVPA-----------DEAAERALGPQQIA 1494

Query: 171  A-------LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                    L+        +          K   ER+ E  A+       AL   +A   +
Sbjct: 1495 DEPLYAVTLEEYLGKDAAVEQLAAELAEQKAEAERVAEEVAAFRAKRNAALEARDAAGTL 1554

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                 P+          A   L            V          A+     E +     
Sbjct: 1555 PVPSRPVPADE-----AAERALGPQQIADEPLYAVTLEEYLGKDAAVEQLAAELAEQKAE 1609

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-NVSNEMYGRSMVISKSFLPPDTSDMRNT 342
            +         +   +              +              +    +  +       
Sbjct: 1610 AERVAEEVAAFRAKRNAALEARDATGTLPVPSRPVPADEAAERALGPQQIADEPLYAVTL 1669

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402
            +    K   +++  +++A  +A+ ER      A   + +     + +A      +     
Sbjct: 1670 EEYLGKDAAVEQLAAELAEQKAEAERVAEEVAAFRAKRNAALEARDAAGTLPVPSRPVPA 1729

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSIL---TSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
                 R        A  PL        L    ++     +L +  A A  V   +A F  
Sbjct: 1730 DEAAERALGP-QQIADEPLYAVTLEEYLGKDAAVEQLAAELAEQKAEAERVAEEVAAFRA 1788

Query: 460  PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                   A++A   + +       D    ++L   +IA +                 ++L
Sbjct: 1789 KRNAALEARDAAGTLPVPSRPVPADEAAERALGPQQIADEPLYAVTLEEYLGKDAAVEQL 1848

Query: 520  AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
            A  L +   +           +      L   D T       + V  DE  +      + 
Sbjct: 1849 AAELAEQKAEAERVAEEVAAFRAKRNAALEARDATGTLPVPSRPVPADEAAERALGPQQI 1908

Query: 580  EGKTLSSL-----------FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
              + L ++             ++    +  KA A    + +           +   ++  
Sbjct: 1909 ADEPLYAVTLEEYLGKDAAVEQLAAELAEQKAEAERVAEEVAAFRAKRNAALEARDAAGT 1968

Query: 629  FILGTLESRLLNFDTLILGG---LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
              + +            LG     +E ++     +       ++        +K   +  
Sbjct: 1969 LPVPSRPVPADEAAERALGPQQIADEPLYAVTLEEYLGKDAAVEQLAAELAEQKAEAERV 2028

Query: 686  HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
             +   A   +      +        + SR +              +       +     L
Sbjct: 2029 AEEVAAFRAKRNAALEARDATGTLPVPSRPVPADEAAERALGPQQIADEPLYAVTLEEYL 2088

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                              EA          +++  +  A  A+R   L+           
Sbjct: 2089 GKDAAVEQLAAELAEQKAEA----------ERVAEEVAAFRAKRNAALEARDA-AGTLPV 2137

Query: 806  TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
              R           +  +   + P     +++ +      E L   +    +    +++ 
Sbjct: 2138 PSRPVPADEAAERALGPQQIADEPLYAVTLEEYLGKDAAVEQLAAEL-AEQKAEAERVAE 2196

Query: 866  SFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896
                   K  +++E         + + S  +
Sbjct: 2197 EVAAFRAKRNAALEARDA--AGTLPVPSRPV 2225



 Score = 38.0 bits (86), Expect = 9.8,   Method: Composition-based stats.
 Identities = 80/836 (9%), Positives = 197/836 (23%), Gaps = 43/836 (5%)

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
             +         +  +P      D   E+      ++      V+  + L + A +  +  
Sbjct: 1459 NAALEARDATGTLPVPSRPVPADEAAERALGPQQIADEPLYAVTLEEYLGKDAAVEQLAA 1518

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---------DIIETEEKKWEDLHA 171
                   +       ++   +  NA   A++ A  +         D         + +  
Sbjct: 1519 ELAEQKAEAERVAEEVAAFRAKRNAALEARDAAGTLPVPSRPVPADEAAERALGPQQIAD 1578

Query: 172  -------LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
                   L+        +          K   ER+ E  A+       AL   +A   + 
Sbjct: 1579 EPLYAVTLEEYLGKDAAVEQLAAELAEQKAEAERVAEEVAAFRAKRNAALEARDATGTLP 1638

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                P+          A   L            V          A+     E +     +
Sbjct: 1639 VPSRPVPADE-----AAERALGPQQIADEPLYAVTLEEYLGKDAAVEQLAAELAEQKAEA 1693

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLG-NVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                     +   +              +              +    +  +       +
Sbjct: 1694 ERVAEEVAAFRAKRNAALEARDAAGTLPVPSRPVPADEAAERALGPQQIADEPLYAVTLE 1753

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
                K   +++  +++A  +A+ ER      A   + +     + +A      +      
Sbjct: 1754 EYLGKDAAVEQLAAELAEQKAEAERVAEEVAAFRAKRNAALEARDAAGTLPVPSRPVPAD 1813

Query: 404  LELTRFGINIDISAGIPLSTTLHSSIL---TSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
                R        A  PL        L    ++     +L +  A A  V   +A F   
Sbjct: 1814 EAAERALGP-QQIADEPLYAVTLEEYLGKDAAVEQLAAELAEQKAEAERVAEEVAAFRAK 1872

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520
                  A++A   + +       D    ++L   +IA +                 ++LA
Sbjct: 1873 RNAALEARDATGTLPVPSRPVPADEAAERALGPQQIADEPLYAVTLEEYLGKDAAVEQLA 1932

Query: 521  VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
              L +   +           +      L   D         + V  DE  +      +  
Sbjct: 1933 AELAEQKAEAERVAEEVAAFRAKRNAALEARDAAGTLPVPSRPVPADEAAERALGPQQIA 1992

Query: 581  GKTLSSL-----------FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
             + L ++             ++    +  KA A    + +           +   ++   
Sbjct: 1993 DEPLYAVTLEEYLGKDAAVEQLAAELAEQKAEAERVAEEVAAFRAKRNAALEARDATGTL 2052

Query: 630  ILGTLESRLLNFDTLILGG---LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             + +            LG     +E ++     +       ++        +K   +   
Sbjct: 2053 PVPSRPVPADEAAERALGPQQIADEPLYAVTLEEYLGKDAAVEQLAAELAEQKAEAERVA 2112

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
            +   A   +      +        + SR +              +       +     L 
Sbjct: 2113 EEVAAFRAKRNAALEARDAAGTLPVPSRPVPADEAAERALGPQQIADEPLYAVTLEEYLG 2172

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY-ARRILKLDFIPHFKKDPDR 805
                             EA+      +  +   N       A   L +   P    +   
Sbjct: 2173 KDAAVEQLAAELAEQKAEAERVAEEVAAFRAKRNAALEARDAAGTLPVPSRPVPADEAAE 2232

Query: 806  TDRG--TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
               G   +    +  +  + + +   +    +  I D+    E+    +    + +
Sbjct: 2233 RALGPQQIADEPLYAVTLEELEQAREDAARGVAAIEDNAAALESELLDVLAELKAM 2288


>gi|297277090|ref|XP_002801295.1| PREDICTED: spectrin beta chain, brain 3-like [Macaca mulatta]
          Length = 2490

 Score = 40.3 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 43/462 (9%), Positives = 106/462 (22%), Gaps = 64/462 (13%)

Query: 271  WNTITEKSTNITSSNTTYSTHPQYS------LAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
            W  + E +              Q+       L  L D   +           S+    R 
Sbjct: 696  WQRLEEAAARRERRLQEARALHQFGADLDGLLDWLRDAYRLAAAGDFGHDEASSRRLARQ 755

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----DVALIEADNEREEAISIAIALR 379
                   +      +         +              V ++EA+    E   +A   R
Sbjct: 756  HRALTGEVEAHRGPVSGLRRQLATLGGASGAGPLVVALQVRVVEAEQLFAEVTEVAALRR 815

Query: 380  MSLD--------------------------------ENKKKSALITADRNLARRVKLELT 407
              L                                 ++     ++        +    L 
Sbjct: 816  QWLRDALAVYRMFGEVHACELWIGEKEQWLLSMRVPDSLDDVEVVQHRFESLDQEMNSLM 875

Query: 408  RFGINIDIS------AGIPLSTT------LHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455
               ++++ +       G P S          +S    ++  + +  + M+   LV++ + 
Sbjct: 876  GRVLDVNHTVQELVEGGHPSSDEVRSCQDHLNSRWNRIVELVEQRKEEMSAVLLVENHVL 935

Query: 456  KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515
            +       +   + A+E     G    + +  L++ +      Q          +     
Sbjct: 936  EVAEVRAQVREKRRAVESAPRAGGALQWRLSGLEAALQALEPRQAALLEEAALLAARFPA 995

Query: 516  DKELAVLLVDHILQCITPLVTYKTN-----KNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                     + +      L +           +      + D        ++        
Sbjct: 996  QAARLHQGAEELGAEWGALASAAQACGEAVAAAGRLQRFLHDLDAFLDWLVRAQEAAGGS 1055

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
            + P     EE   L +  + + E     + +    +     L+  +      E    L +
Sbjct: 1056 EGPLPNSLEEADALLARHAALKEEVDQREEDYARIVAASEALLAADG----AELGPGLAL 1111

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
               L    L +  L+                    R ++  L
Sbjct: 1112 DEWLPHLELGWHKLLGLWEARREALVQAHIYQLFLRDLRQAL 1153


>gi|256825720|ref|YP_003149680.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689113|gb|ACV06915.1| DNA/RNA helicase, superfamily I [Kytococcus sedentarius DSM 20547]
          Length = 704

 Score = 40.3 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/346 (10%), Positives = 86/346 (24%), Gaps = 30/346 (8%)

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
               L    +   T   +        P    + ++++ +   A     +  +   L   P
Sbjct: 265 PRHLLEFPSRHPQTTSVVLHRNYRSTPQILQVANAVIAADPQAAGGRVELHSQRPLGPEP 324

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                  ++  +R               +         VL R   Q         ++ + 
Sbjct: 325 ELSVHDDDEAEARWVADRIGQLTAQEDVTPG----DVAVLFRTNGQSEAIETALARAGVP 380

Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
              +           +    +V  +    S  G + +   T   ++              
Sbjct: 381 YLVRGGERFFARQ--EVRAGIVLLRGAVRSDDGEVPLVRLTTDVLSGAGWTHEPPASSGA 438

Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                E  + L S+   +       +         +   +D  + +        + +   
Sbjct: 439 QRERWESLQALVSVAEDLAAVNPDARMGD------LVAELDRRSAEQHAPAMDGVTLASL 492

Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++ L +  + + G +EG+ P + A+               T E    +    +     
Sbjct: 493 HAAKGLEWPVVFIVGCSEGLMPISLAR---------------TPEAVAEERRLAYVGITR 537

Query: 694 TR-HLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
               L  TR+            SR+L     + G +     +  G 
Sbjct: 538 AEDRLFLTRARGRAGARSEREPSRFLAGAASVLGQEAVSEKRPTGP 583


>gi|330825157|ref|YP_004388460.1| Nitrate reductase [Alicycliphilus denitrificans K601]
 gi|329310529|gb|AEB84944.1| Nitrate reductase [Alicycliphilus denitrificans K601]
          Length = 930

 Score = 40.3 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 67/671 (9%), Positives = 150/671 (22%), Gaps = 45/671 (6%)

Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
           ++P      L R   +         II+     +  A    +       +   +L G+  
Sbjct: 176 ANPAWAHPILFRRIEDARRANPALKIIVCDPRRTDSAALADLHLALRPGSDLWLLHGMLR 235

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED----VKRLGNVSNEM 320
            +    W      + + +      +   Q +   +     I   D     +    V +  
Sbjct: 236 CMVEQGWTDPAYIAAHTSGWTALQAQVAQATPEAVWQHCGIAPADLLQAARWFAGVESGS 295

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
             R   +S      + S     +       ++             +   +  +       
Sbjct: 296 DPRRPTLSLYCQGLNQSARGTDNNAALIHLHLACGQIGKPGAGPFSLTGQPNA------- 348

Query: 381 SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                 ++   +    +  R +     R    +    G+P            +  A  + 
Sbjct: 349 ---MGGREVGALANQLSAHRNLAD--PRHRAEVAALWGVPEVPAAPGKAAVEMFEAAAEG 403

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR---GNKNSYDIMDLKSLVLDRIA 497
              + +  +     A     +  + RA    E V ++       +    DL         
Sbjct: 404 --HIKLLWIACTNPAHSLPDQALVRRALQRAEFVVVQDAYAGVATARFADLLLPAATWGE 461

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDH--ILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            +   T+     SR+            D   + Q    L      + +  G         
Sbjct: 462 KEGTVTNSERRISRVRAAVPAPGQAWADWRIVTQVARRLQPLLPQRAALPGLFPYEGPEA 521

Query: 556 LTVTCLQNVCLDEHRKLPNLWF-EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           +     ++    +       W   E         +   E  + + A+             
Sbjct: 522 IWNEHRESTRGRDLDITGLDWALLEAAPRQWPCPTGQAEGTARLYADGRFATADARARFV 581

Query: 615 GETVKPKIEKSSTLFILGTLESRLLN-FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            +      E +   + L  L  RL + +  +   G  E +W         +     + L 
Sbjct: 582 PQQPGGVAEPTDARYPLALLTGRLRDQWHGMSRSGTVESLWAHAGEPVAQMHAADMARLG 641

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
           L+  +                     T        P  AS  L    V     + D +  
Sbjct: 642 LRDGDL-----------------AYLTSRRGSIVAPARASDELASGQVFLPMHWGDEVLG 684

Query: 734 RGQ---CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
                   L     L    + P   +P+         +      +      P A   R  
Sbjct: 685 GASSTGRRLAGVNALTTAARCPQSLQPELKHAAIKVLKAELPWSLWAQAWLPLAQVHRAR 744

Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
             L  +         +  G        +L     +     +   +  ++D          
Sbjct: 745 EALQSLMDAFPFASCSLFGRPGTGTGLQLRAGAHHAPDEALVERIAGLLDLQGAGLLSYR 804

Query: 851 HIDIIWRHLFH 861
                      
Sbjct: 805 DARRGQWRRAR 815


>gi|187479446|ref|YP_787471.1| acetyltransferase [Bordetella avium 197N]
 gi|115424033|emb|CAJ50586.1| putative acetyltransferase [Bordetella avium 197N]
          Length = 828

 Score = 40.3 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 64/624 (10%), Positives = 149/624 (23%), Gaps = 23/624 (3%)

Query: 72  STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
             +LP   +L  +      A +LL + L  P    +  L L        +      +   
Sbjct: 72  PAVLPE--TLRRLERLAPRALILLPHELPDPYP--RGTLALCEEWARAHHCQLLGPRAFG 127

Query: 132 PESP---LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188
            + P   L+L   P  A      L      I      W +   +           A   +
Sbjct: 128 AQRPHAGLNLSQHPTLARAGRVALVAQSRSIMAAVMDWAEDVHIGFSLAVSLGDEAVLGM 187

Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII--AGSTGSIPATARLM 246
                Y        +    +          +      +  P+I+  AG     PA A   
Sbjct: 188 SEVLDYLASDPRTDSIVLYLEDMGPARDFMSALRAAASVKPVIVLKAGRGEEGPADAVFD 247

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
           + +        V   +       +            +  +  S  PQ +L  +     + 
Sbjct: 248 AALRRA-GAVRVRYFVQLFSAVKVLGYARRPRGRRVALLSNGSGPPQLALDLIGPDAAVL 306

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
           + D+      +          +++ +   T                      V ++ A +
Sbjct: 307 KADLSPATQRALAALLEPDAQTRNPVITYTPLTPELLQQLLDCLIDDAGVDGVLVLLAPD 366

Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
              +  ++A  L     + +K            R ++  L   G             T  
Sbjct: 367 ALADMPAVARQLAQLAPKARKPVVSCFMGDAGMRPLRRMLDDAGTPAF--------RTPE 418

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
           S+        +        +    + P A  G P+   +RA  A      R      +  
Sbjct: 419 SAA--DAFGVLATHYYNQQLLLQTQPPEAPGGPPDMATARALLAQLREQGRRELTESECR 476

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            L       +     +      +SR               I           +       
Sbjct: 477 VLLKAFRVPLRDSPLDLGSGEPESRPMAIRVRTDSRFGPVIRFGAGGSDALLSVAERGMD 536

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              ++++    +     +         +    E  +      S+++     I++  I+ +
Sbjct: 537 LPPLNNFLARKLIERSRIWRRVLAAQVSNAATEALQHALVQVSELVSELPDIQSLDIDPL 596

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
                 +    ++  + ++         +        +                 P++ R
Sbjct: 597 YAGETQLRAGGLRMTLTEAPA---CPAPQITGYTHMAIHPYPSQLVQMCSFEDGTPWVIR 653

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEM 690
            ++ +          G +     M
Sbjct: 654 PIRPEDGEPLQAFIRGLSERSRYM 677


>gi|261419392|ref|YP_003253074.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC61]
 gi|319766207|ref|YP_004131708.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC52]
 gi|261375849|gb|ACX78592.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC61]
 gi|317111073|gb|ADU93565.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC52]
          Length = 1187

 Score = 40.3 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 86/803 (10%), Positives = 206/803 (25%), Gaps = 28/803 (3%)

Query: 99   LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
            ++  +  +Q++L LA   L       +++K+    +             LA     + + 
Sbjct: 279  IDESIDGLQQVLLLASEELEKLEGRKEVLKERKKHAARRKAQLDDITAALAAKRRRLTEQ 338

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
            +  E ++   L A             A F    +    E          + ++ A ++ E
Sbjct: 339  LHAEREELARLEAGAAALERELKEKQALFSAHEADIEEEIERRKGDYIDLVHEQAALKNE 398

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
              H+ +      + A  T    A  R ++           L      +  A+      ++
Sbjct: 399  RAHVEQAISK--LHAKRTALDEANRRHLAEREQLEQKRAALWAEQTRLEQALTEAHNRQA 456

Query: 279  TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                +     +   Q+    LL      R+  K           R   + +         
Sbjct: 457  ALAAALAAQKTELEQH--EALLHQARQYRQQTK----------ARQQWLEEMQHDYSGFV 504

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-----DENKKKSALIT 393
                ++L+ +        + V LI   +  E AI  A+   M       ++  +++    
Sbjct: 505  QGVKEVLKARDLLPGIHGAIVELIRVPDRYETAIETALGGAMQHIVVDSEQAARQAIHYL 564

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  R   L L                    + +  +     +      AIA L+ H 
Sbjct: 565  KTNGYGRATFLPLDVIKARALSERERAAIDRHPAFVGIASELVEYDRAYRAAIAHLLGHV 624

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            +                      R    + D   +              T     ++R  
Sbjct: 625  IVTADLKGANELAKLLH-----YRYRLVTLDGDVVSPGGAMTGGGAAKKTASLLSRNREL 679

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            E        + + I +    +                +   +      + +   +  +  
Sbjct: 680  EMLSAKLQEMDETIARLERAVAA--KRHELAEQEAQAAALQEEVAALREALQRQKDEQRE 737

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
              W ++      +L+ +         A     +  I R ++    K +        +   
Sbjct: 738  LEWQKKRIDERLALYDEEKANDEREMAELNRRLGAIDRQLEQLAEKLQTIDDDISRLQAQ 797

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++     + L      + +    T +    +R    +   + AE   G    + E A  
Sbjct: 798  KQTEQTTKEALQAAITEQKIALAETKERVKHARRKVEEWEAELAETIRGLKEAERERAAL 857

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
               +       E        +   +   L         +   Q  L+   +    TK+ H
Sbjct: 858  DAEMEAPEWNEEEIEQLRKQKLEDKQKTLELIASRREQRLDFQRRLEHLEQEWKETKRQH 917

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
             +        E +           L+                 P      +   R  L  
Sbjct: 918  KQLADVVKDEEVKLNRLDVELENLLVRLREEYGLSFEAARSAYPLEIGADEARKRVKLIK 977

Query: 814  NIITELIKKRINKNT--PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
              + EL    +        ++   + + +   + E     +  +   +  ++   FL   
Sbjct: 978  RAMEELGTVNLGAIDEYERVSERHRFLSEQKTDLEEAKATLHQVIDEMDEEMKKRFLTTF 1037

Query: 872  EKIQSSIEKIFVNIPAKMAIESI 894
            E+I++   ++F  +      +  
Sbjct: 1038 EQIRAHFGEVFGELFGGGRADLR 1060


>gi|28375551|emb|CAD66599.1| SMC protein [Geobacillus stearothermophilus]
          Length = 1187

 Score = 40.3 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 86/803 (10%), Positives = 206/803 (25%), Gaps = 28/803 (3%)

Query: 99   LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
            ++  +  +Q++L LA   L       +++K+    +             LA     + + 
Sbjct: 279  IDESIDGLQQVLLLASEELEKLEGRKEVLKERKKHAARRKAQLDDITAALAAKRRRLTEQ 338

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
            +  E ++   L A             A F    +    E          + ++ A ++ E
Sbjct: 339  LHAEREELARLEAGAAALERELKEKQALFSAHEADIEEEIERRKGDYIDLVHEQAALKNE 398

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
              H+ +      + A  T    A  R ++           L      +  A+      ++
Sbjct: 399  RAHVEQAISK--LHAKRTALDEANRRHLAEREQLEQKRAALWAEQTRLEQALTEAHNRQA 456

Query: 279  TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                +     +   Q+    LL      R+  K           R   + +         
Sbjct: 457  ALAAALAAQKTELEQH--EALLHQARQYRQQTK----------ARQQWLEEMQHDYSGFV 504

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-----DENKKKSALIT 393
                ++L+ +        + V LI   +  E AI  A+   M       ++  +++    
Sbjct: 505  QGVKEVLKARDLLPGIHGAIVELIRVPDRYETAIETALGGAMQHIVVDSEQAARQAIHYL 564

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                  R   L L                    + +  +     +      AIA L+ H 
Sbjct: 565  KTNGYGRATFLPLDVIKARALSERERAAIDRHPAFVGIASELVEYDRAYRAAIAHLLGHV 624

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            +                      R    + D   +              T     ++R  
Sbjct: 625  IVTADLKGANELAKLLH-----YRYRLVTLDGDVVSPGGAMTGGGAAKKTASLLSRNREL 679

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
            E        + + I +    +                +   +      + +   +  +  
Sbjct: 680  EMLSAKLQEMDETIARLERAVAA--KRHELAEQEAQAAALQEEVAALREALQRQKDEQRE 737

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
              W ++      +L+ +         A     +  I R ++    K +        +   
Sbjct: 738  LEWQKKRIDERLALYDEEKANDEREMAELNRRLGAIDRQLEQLAEKLQTIDDDISRLQAQ 797

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             ++     + L      + +    T +    +R    +   + AE   G    + E A  
Sbjct: 798  KQTEQTTKEALQAAITEQKIALAETKERVKHARRKVEEWEAELAETIRGLKEAERERAAL 857

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
               +       E        +   +   L         +   Q  L+   +    TK+ H
Sbjct: 858  DAEMEAPEWNEEEIEQLRKQKLEDKQKTLELIASRREQRLDFQRRLEHLEQEWKETKRQH 917

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
             +        E +           L+                 P      +   R  L  
Sbjct: 918  KQLADVVKDEEVKLNRLDVELENLLVRLREEYGLSFEAARSAYPLEIGADEARKRVKLIK 977

Query: 814  NIITELIKKRINKNT--PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871
              + EL    +        ++   + + +   + E     +  +   +  ++   FL   
Sbjct: 978  RAMEELGTVNLGAIDEYERVSERHRFLSEQKTDLEEAKATLHQVIDEMDEEMKKRFLTTF 1037

Query: 872  EKIQSSIEKIFVNIPAKMAIESI 894
            E+I++   ++F  +      +  
Sbjct: 1038 EQIRAHFGEVFGELFGGGRADLR 1060


>gi|71275193|ref|ZP_00651480.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Xylella
           fastidiosa Dixon]
 gi|71164002|gb|EAO13717.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Xylella
           fastidiosa Dixon]
          Length = 1167

 Score = 40.3 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 48/559 (8%), Positives = 116/559 (20%), Gaps = 28/559 (5%)

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA-----ISIAIA 377
           R   +       +     +    E     +    +DV  + A   R E        ++  
Sbjct: 257 RLQQLLAEQREAEMRIETSRVRREESAEALATAQADVYQVGATLARIEQQIQHQREMSQR 316

Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
           L  + DE +K+   +T            L               +      +L       
Sbjct: 317 LHKARDEAQKQLIDLTRHMGDDAATLAVLREAVE----------NNEPQLHVLREQSEFK 366

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                    A        +    E   +     +E   +          + +  +L    
Sbjct: 367 QDALRDAEAALTDWQQRWESHNRETSEASRAGEVERTRVDYLDRQALDAERRRDLLLAER 426

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              +   +     ++  + +     L     Q      T    ++      +     +  
Sbjct: 427 AGLDLDALAEAFEQIEVQYETQKAALDGLNDQLEQRKQTLADVQHQQRTAQTELADVRKH 486

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               +               +E+G  ++ L +  + + + +             L     
Sbjct: 487 AQTARGRLSSLETLQQAALGQEQGAAMTWLQAHGLSSAARVGERIRVESGWENALESALG 546

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA-KNPFLSRVMQSDLNLKT 676
              +      L  L    + L      ++      +    T+        V    L    
Sbjct: 547 HMIEGVLVDDLQTLVEALNSLNEGHIALVADTQTQIQVAPTSLAAKVQGPVAIRRLLTHL 606

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                  AA   +   G    + TR+            WL+              ++  Q
Sbjct: 607 HGAEDLVAARALQATLGEGDWVMTRNGECLGEG-----WLRVSRSGAAEQGALLRERDIQ 661

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                   L     +              +       + ++       +  R + +L   
Sbjct: 662 TLRAQIETLQEREAELE------HRLTHFRDHLLMAEQHREDAQRQLYIAHRGVSELAGQ 715

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN-LPPHIDII 855
                      RG + H              + +     +  +D    +   L      +
Sbjct: 716 RQAHHGKLEASRGRIQHIEAEIAQLLETLDTSRDQARTARATLDEAVTRMGDLESQRQAL 775

Query: 856 WRHLFHKISHSFLEHEEKI 874
                          E   
Sbjct: 776 HAERQQLNLTRDQAREAAR 794


>gi|182434368|ref|YP_001822087.1| putative NRPS [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178462884|dbj|BAG17404.1| putative NRPS [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 1103

 Score = 40.3 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 56/522 (10%), Positives = 127/522 (24%), Gaps = 12/522 (2%)

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
                      W+  +  S            HP  +L      + +           +  
Sbjct: 5   APGSRTPAPPAWHGTSPLSPAQKRFWFLDRAHPGTALYNSCSAIRLSGPLDVAATVGAVT 64

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
              R   + +S  P ++   R        +P     F D+  +       E   IA    
Sbjct: 65  EIVRRHDVLRSAFPVESGAPRVRIAPARPVPT---AFLDLTRLPPPLRAAEVRRIAEEHA 121

Query: 380 MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               + ++   L T     A      L  +   +        S  +    L  L +A  +
Sbjct: 122 RRPFDLERGPLLRTVLLREADDDHTLLLNWHHIVCDGW----SRHIFVDELLELADARAE 177

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                     +    A+    E     +    E       +    + D   L  DR +  
Sbjct: 178 GRAPR--LDPLPAQYAELVAREGRRRGSDTEHEAHLAYWRERLSGLTDATRLPPDRTSPD 235

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
           +        +  L     +    L          +V       +   +L   D    T +
Sbjct: 236 RPTPPSASVRHTLDAGLPDRVAELARAERVTP-FMVLLTAFVVALSRHLDRDDVVVGTPS 294

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
            L++    +    P L      +T  S    + +  + ++   +   +      +     
Sbjct: 295 ALRDDPEADVLIGPFLNIL-ALRTDLSGDPTVRQALARVRKTCLGAYEHHAAPFEDVVSA 353

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
               ++ +      +  + +    + +G                   +    L       
Sbjct: 354 IGAARTGSRTPFFGITFQYIATPPVHVGPGGLTAHTTEVEPGLAKFDLTVDVLAEDGHTD 413

Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR-GQCY 738
            + Q   D   A     L+       +++     + + R   +G       L+   G   
Sbjct: 414 VLAQYDSDLYRAESVNGLLLLWQSVLDDMTRDPEQPVGRTGEIGAARRTPLLEAAVGAPV 473

Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
                       +   +R    P L +     ++ E+ +  N
Sbjct: 474 RAPAEASVLDVFEQWAERTPDAPALVSGATRLTYGELDRAAN 515


>gi|295100355|emb|CBK97900.1| hypothetical protein FP2_02130 [Faecalibacterium prausnitzii L2-6]
          Length = 424

 Score = 40.3 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 44/166 (26%), Gaps = 21/166 (12%)

Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860
                 + GT  H  +       +       +  +   + +  E++              
Sbjct: 237 DGLTAAEMGTALHAFLEHADFGALAAVRDAEDDAVLAAVRAERERQAAAQLTPPAIAGKL 296

Query: 861 HKI-SHSFLEHEEKIQS-SIEKIFVNIPAKMAIE------------------SIGIHLTG 900
                  F+  E   +    E +   +    ++                     G+ + G
Sbjct: 297 DVYKILRFVRSEAFRRICGAENVLRELAFITSLPAAEVMAAQGRALPDGPAADAGVLVQG 356

Query: 901 FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946
            AD + +     +++ DYKT          +    QL   A A++ 
Sbjct: 357 IADIVLVYPD-HLELLDYKTDRRKTPADFVRAYRAQLEFYAKAIEK 401


>gi|71736704|ref|YP_274154.1| pyoverdine sidechain peptide synthetase IV, D-Asp-L-Ser component
            [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557257|gb|AAZ36468.1| pyoverdine sidechain peptide synthetase IV, D-Asp-L-Ser component
            [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 2875

 Score = 40.3 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 75/686 (10%), Positives = 175/686 (25%), Gaps = 61/686 (8%)

Query: 126  IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
              +  + ++ +  P+   +AI L   L  +I+          D   L   +    W    
Sbjct: 1103 PERQHWNQALMLKPLQTLDAIHLQAALTALIEQ--------HDALRLGFTQQDGQWQATF 1154

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
              L      WT  L              L   EA+  +    GP++ A          RL
Sbjct: 1155 GALNTRDLLWTHEL------DSAERLPELAD-EAQRSLDLKNGPLLRAVLIDLPQGEQRL 1207

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITE---KSTNITSSNTTYSTHPQYSLAKLLDF 302
            +  + +     +    L   +  A     T         TSS  +++ H Q         
Sbjct: 1208 LLVIHHLVVDGVSWRVLLEDLQQAYVAIATGQPLALATKTSSLQSWAEHLQAYAQSPALA 1267

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
             ++     +                 +           N +     + +    +     I
Sbjct: 1268 QELDYWQTQLKDVSDALPCDHPHGGQQQKHALSVVTQLNGEQTRQLLQDAPAAYR--TQI 1325

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
                    A  ++              ALI  + +    +   L         S   P+ 
Sbjct: 1326 NDLLLTALARVVSRWTAQPH-------ALIRLEGHGREDLFDTLDITRTVGWFSNLYPVR 1378

Query: 423  TTLHSSILTSLL------NAIFKLNDFMAIATLVKHPLAKFGFPEKYL------------ 464
             T  +++  SL+       A+            ++   A+       L            
Sbjct: 1379 LTPQATLADSLMTIKEQLRAVPDKGIGYGALRYLRSESARQTLQALPLGSIVFNYLGQFD 1438

Query: 465  --SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                A+ AL   +   +  S       +  L              W    +  +++    
Sbjct: 1439 GSFDAQGALFTPSAESSGASQSADAPLAAPLSINGQVYGGELRLSWTFSGAVFERDTVQR 1498

Query: 523  LVDHILQCITPLVTYKTNKNSTCGN---LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
            L D     +  L+ + T +           ++  ++  ++ L           P    ++
Sbjct: 1499 LADEYAVELQQLIAHCTREGVAGVTPSDFPLARLSQSQLSNLPIPAAQIEDIYPLAPMQQ 1558

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                 +          + ++   +  +D+       +      E   + F+    +S  +
Sbjct: 1559 GMLFHTLFEQDAGNYINQMRVE-VSGLDVPRFRAAWQATLDAHEVLRSGFVSHLEQSLQV 1617

Query: 640  NFDTLILGGLNEGVWPKNTAK-NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
                + +  +      ++    + + +   Q   +L                     H +
Sbjct: 1618 VLRNVSMPFVELDARAQSGEWIDDWANADRQQGFDLARGP----LLRLAVLRTGEQTHQL 1673

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ-----PH 753
               S         +SR L  +L             R + Y++W ++ D    +       
Sbjct: 1674 IYTSHHILMDGWSSSRLLGEVLQRYSGQTLPRQVSRYRDYIEWLQRQDAALSERFWTGQL 1733

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLI 779
             +  +P   ++A   + S       +
Sbjct: 1734 AELDEPTRLVQAFKASGSEQGHGDYL 1759


>gi|188584168|ref|YP_001927613.1| hypothetical protein Mpop_4982 [Methylobacterium populi BJ001]
 gi|179347666|gb|ACB83078.1| conserved hypothetical protein [Methylobacterium populi BJ001]
          Length = 2665

 Score = 40.3 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 66/725 (9%), Positives = 171/725 (23%), Gaps = 27/725 (3%)

Query: 149  AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208
            A+ L  + D I         L  L +E+         +  +  +  + ER+  L+    V
Sbjct: 1690 AQELRALFDEIH------ARLGTLVDERATALTGRLDNQTQALAALFDERMQSLDGL--V 1741

Query: 209  GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
              +        E+        +       +    ARL +      N A  L         
Sbjct: 1742 ERRGGAFAQVVENQAAALARTVDTRSEEFTARIDARLRAFATVVANRANALADAFDERQD 1801

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
            A    I E    + ++    +         + +        V+                 
Sbjct: 1802 AYAALIDEGMARMVAALDERARQHVAQFETVEERQKAVAALVEEGTARIAAALDERAQRQ 1861

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
             +            +     I              A     +A ++    R   +  +  
Sbjct: 1862 AALADAFDG---QREAYAGLIEQGTARMVAALEERAHRHAAQAETVEERQRAVAELIEAG 1918

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            +A + +  +   + +  L     +    A   L     + ++++L     +         
Sbjct: 1919 TARLVSALDERAQRQAALADA-FDGQREAYASLIEQGTARMVSALEERARRHAVLAEAFD 1977

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
              K   A           A               +D        L      +    +   
Sbjct: 1978 RQKEAYAALIDGGTARMVAALDERAERQVALAERFDERQTAYAALVEDGIARMGRMLEER 2037

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTY--KTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
              R + E +  A  L + + Q    L         +               +       +
Sbjct: 2038 AHRHAAEVQARAEALAETMDQHNGALARLIDGPAASLAEALAEREQALDRLIADKGTPLV 2097

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
            +  R+  +       ++  +L + + E  +       +  D + R + G   + +     
Sbjct: 2098 EALRERTDAIVVRTVESAKALRAALDEGAAASADTVAQAHDRVRRDVAGFLTRIENANDG 2157

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ---SDLNLKTAEKYIGQ 683
               ++G     L   +  +   + +     +           +     + L+ A +    
Sbjct: 2158 LKDLVGGASENLAAVEQGLAARVEQIQSALDRVAADTAQASDRVSTQVVALRDASQGALA 2217

Query: 684  AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743
             A D       R          +      +      +     +   + +   +  L    
Sbjct: 2218 QASDLAETLDARGRALVERTGTHVGALTEAAGTLEAVEGRLAESLSSRQAVVEAVLSRLE 2277

Query: 744  ----KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                 ++  T +      +     EA+ R  S S + +   +     A    +L      
Sbjct: 2278 ERSQAIEAQTGRFGSVIEETLRAAEARARELSES-VARAAREAGTAVAGDFARLRSGADE 2336

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINK-----NTPEINHLMKQIIDSHFEKENLPPHIDI 854
            +         +       ++++          ++    + M   I    +         +
Sbjct: 2337 ESARTAGAVRSAIEAASAKMMESFAAASGQFGDSVARMNAMAAEIRRELDATRADLQRGV 2396

Query: 855  IWRHL 859
            +    
Sbjct: 2397 LELPR 2401


>gi|149920119|ref|ZP_01908592.1| tetratricopeptide repeat protein [Plesiocystis pacifica SIR-1]
 gi|149819062|gb|EDM78499.1| tetratricopeptide repeat protein [Plesiocystis pacifica SIR-1]
          Length = 1773

 Score = 40.3 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 89/826 (10%), Positives = 193/826 (23%), Gaps = 28/826 (3%)

Query: 16   PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF-IEITGKKSTI 74
             F  E+  +LL    +E         +  A +   +       E       E     + +
Sbjct: 589  DFPAELATSLLTVAELETGATRHAALIEAAELLGALGEHEGALEASEHVRAEDPDNATAL 648

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
                +   ++  +   A +L         +  +R L L    L+            Y   
Sbjct: 649  EASERWARELERKDLLASILPQRAAAELDAAQKRSLHLEAAELLRGEGRMVDAIAQYRAV 708

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
              + P     A  LA+ L  +    ET +                     ++ L    + 
Sbjct: 709  VEANPSDAETAKLLAELLRPLASGAETLDGLSSVNAREGLIDALSVLAEGSEDLGRKGEL 768

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL--MSTVANH 252
              E    L+  +  G + A    E           ++ A           +    T+A  
Sbjct: 769  LAEVAALLDREADGGER-AADCRERIVATLPIDHALVAAAVDDLSRYYRSVDAHDTLAEL 827

Query: 253  PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
                     L+  +       + E S             P     +  + L+   +    
Sbjct: 828  LERRAKSAALEPGMRIHALRELRELSAG-----------PLADPMRECEVLEQLMDLDPG 876

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
             G   + +  R     +     +    R     +      +   +   + E     +EA 
Sbjct: 877  EGRWRDLLIARLREAGEDERAEELLRERLEQAADGPEERAEMLVTMARMREQAGALDEAE 936

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
            +         D +    AL+        R    L         S           +    
Sbjct: 937  ARVREALELHDGSSAGWALLRDILEQRERPLEALEALVRAAQTSTDPGEKVRGLFAAAKK 996

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
               A+ K    + +   +   L         L                ++   +      
Sbjct: 997  WATALSKPERALPLLRELVA-LDPHHEEATALFTELLVDRGDLGEALPHAERWVTQLRAG 1055

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC-----GN 547
                       H    +  L+  DK+ A  L+    +                      +
Sbjct: 1056 DPNNREANARAHALAGRCALAAHDKDKARELLRVAKEFDPRNREVARALADLELESENWD 1115

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW-I 606
             ++  +  L +   Q       +    L      + L  L          +  +      
Sbjct: 1116 AALKAYQGLAMQASQGEGEVRTQAELYLRMGLARRGLGELAKAHQMIDRALDLDPGFGDA 1175

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
              +   +     K    +   L +L T  + L   D        E +  +    +     
Sbjct: 1176 ARLLVELADAPAKQVEAQKRLLSVLETGLAELDGEDERRAARETELLDLRLALASTLAED 1235

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
            + + +  ++     I     D  + +    L              A   L RL     + 
Sbjct: 1236 LNRPEEAVEQMSAVIAARPDDVALLHKALDLY-----SNAEQWAEAVDILDRLAAFQESG 1290

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                  +     L    +LD  T     +R       +        + +++L     A  
Sbjct: 1291 PILAKYRYAAASLIRANELD-PTGGVLRERLLGVLEADPLHDKAFTAVVEELRQAGEAKE 1349

Query: 787  ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
              ++L+       +       R  L  ++     ++  +  T  I 
Sbjct: 1350 LSKVLRARLKALPETGEAAPARVELLESLGALYQRELGDPRTAMIA 1395


>gi|224050721|ref|XP_002196998.1| PREDICTED: similar to spectrin, beta, erythrocytic (includes
            spherocytosis, clinical type I) [Taeniopygia guttata]
          Length = 2127

 Score = 40.3 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 62/724 (8%), Positives = 156/724 (21%), Gaps = 27/724 (3%)

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
                   W                 L+       +  +     A  E  +   +  +   
Sbjct: 389  VSDINRAWEQLEKAEHERELALRNELIRQEKLEQLARRFDRKAAMREAWLSENQRLVAQD 448

Query: 234  GS-TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
                      A      A   + A     +      A+   +  +  +          + 
Sbjct: 449  NFGQDLAAVEAAKKKHEAIETDTAAYRERVQ--AIEAVAKELELEGYHDIQRINGRKDNI 506

Query: 293  QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
                 +LL+ L  +R+ ++    + +        I              +     +   +
Sbjct: 507  LRLWEQLLELLAARRQRLEMNLTLQHLFQEMLHCIDWMDEVKVKLASPESGKHLLEAEEL 566

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA--LITADRNLARRVKLELTRFG 410
             +    +    A    +     A ALR +  E  +     +I    +     + EL    
Sbjct: 567  LQTHRLLEADMAVQAEKTRAISAAALRFADAEGYRPCDPKVIRDRVSHLEMCRRELQ--- 623

Query: 411  INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
                ++A          S+ T L       +       L          P   L + ++A
Sbjct: 624  ---VLAARRRALLEQSRSLWTCLWELDEAESWIKEQEQLYSSLDFGKDLPGVLLLQRRHA 680

Query: 471  LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                 LR      +        L                 R      E         L+ 
Sbjct: 681  AFEAELRSRGGRLEQTLAVGEGLAAAGRAAEQLQERGAAVRALWAQLEELAAFRRRGLRE 740

Query: 531  ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                  ++         L  +          Q+          +    +E         +
Sbjct: 741  AEGFFQFQAEVEELAEGLQDARRRAAAEELGQDESRTLVLLRQHQELLDELAAAREQLDR 800

Query: 591  IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650
            + +             +  +RL     +  +    +               D   + G +
Sbjct: 801  LAQQAEGFPPELRAGPEAQSRLAALRELHAEAAALAERR----GRQLQDALDLYTVFGES 856

Query: 651  EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN--NI 708
            +       +K  +L  +                   + +MA     +       +     
Sbjct: 857  DACHLWMGSKETWLGELEVPQALEDLDVTQRRLDGLEQDMATVASQIAAVNQAADGLLAS 916

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
                S  +++        +    +   Q        L         +  + +   +A+  
Sbjct: 917  GHPRSPQVRQCREQLNERWGRFRELVLQRQRAVGSALRLLNYNLESEETQKWLQSKARAV 976

Query: 769  TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
              +    + L         R++  ++      +D     R          L ++R    T
Sbjct: 977  EATAELGRDLAG--VLATQRKLYGIERELAVAQDRLAALRSQA-----ERLAEERPEAAT 1029

Query: 829  PEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV--NI 885
                 L          +         +              + +  + S+ + +     +
Sbjct: 1030 EVAQKLAMATSAWDELQAALAERAASLGEAGQLRSFLQDLDDFQAWLFSAQKAVAAVDEV 1089

Query: 886  PAKM 889
            PA +
Sbjct: 1090 PASL 1093


>gi|269124640|ref|YP_003298010.1| amino acid adenylation domain-containing protein [Thermomonospora
            curvata DSM 43183]
 gi|268309598|gb|ACY95972.1| amino acid adenylation domain protein [Thermomonospora curvata DSM
            43183]
          Length = 4090

 Score = 40.3 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 76/611 (12%), Positives = 148/611 (24%), Gaps = 43/611 (7%)

Query: 62   SEFIEITGKKSTILPIIKSL---GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118
                 +  +    LPI + L   G++ E +    L             +    L   + +
Sbjct: 1096 EALRTLLVEGPDGLPIQRVLPPGGELFEVRDLRGLPADQVAEAEAQAARHRFRLG--VDL 1153

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI----IDIIETEEKKWEDL----- 169
                    + D      L    + A+       LAD+        +  E  W  L     
Sbjct: 1154 PIRATLLRVDDEAWTLILLQHHAAADEWSFTPLLADLSRAYAARAQGREPDWAPLPVQYA 1213

Query: 170  ------HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
                   A  +      W  A   L   +    +R     A          +  +    +
Sbjct: 1214 DYTVWDAAQDHTHQLDHWERALAGLPEETTLPPDRPRPAEAGHRGDQVTFQLPLDGVREL 1273

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
              + G  +      ++ A  +      +   G  +    D  +   +   +         
Sbjct: 1274 ARSTGTSVFMVLHAAMAAVLQRAGAGDDIALGTPIAARPDEDLADLVGVFVNLLVLRTDL 1333

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            S     T     +      LD           V   +     +             R  D
Sbjct: 1334 SGDPTFTELLQRVRT--ADLDAFAHADVPFEQVVERLAPERSLARSPLFQVMIVHQRLAD 1391

Query: 344  ILENKIPNIQKCF----------SDVALIEADNEREEAISIAIAL--RMSL-DENKKKSA 390
                      + F           DV   E D+  E   + A  L  R ++     + +A
Sbjct: 1392 ARLKLPGVEAEPFLPKTGGVKFDLDVYFAEGDDRIEGVAAYATDLYDRETVTALFDRLAA 1451

Query: 391  LITADRNLARRVKLELTRFGINIDIS---AGIPLSTTLHSSILT--SLLNAIFKLNDFMA 445
            L+T       R   +L     + D +    G  ++                I       A
Sbjct: 1452 LLTRAVRHPGRRLSQLLPPFDHPDTARDFGGRTVADLFAEQAARTPDAPALILPGGSGQA 1511

Query: 446  IATLVKHPLAKFGFPEK-YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN-T 503
             AT    P  +         +      E +A R          + ++ L R A       
Sbjct: 1512 AATAENDPAGRSPQDVVISYAELDRRAEELADRLAAAGAGPEQVVAIALPRSAEFVTALL 1571

Query: 504  HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG-NLSISDWTKLTVTCLQ 562
             V    +     D       +DH+LQ   PL+    ++           +        + 
Sbjct: 1572 AVIKTGAAYLPIDVTYPQARIDHMLQAARPLLVLGRDEPPADAPPRERVEILPDHPAYVI 1631

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                        +  +       +    ++E G  +  ++  +ID  T L+ G      +
Sbjct: 1632 FTSGSTGTPKAVVGTQRALANRLAWGLDLVEPGMRVAKSSPAFIDGTTELLGGLLAGDPV 1691

Query: 623  EKSSTLFILGT 633
              +        
Sbjct: 1692 LIADDATATDP 1702


>gi|122879334|ref|YP_202913.6| glutamine synthetase adenylyltransferase [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 941

 Score = 40.3 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 66/605 (10%), Positives = 134/605 (22%), Gaps = 28/605 (4%)

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           ARL       L +   + +             A  +A + A +    + E + WE    L
Sbjct: 200 ARLGQQLARLLDEATAEGFSHRVDLRLRPFGTAGRVALSFAGMDQYFQREGRDWERYAWL 259

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH----------- 221
           K             +L+    +   R ++  A   +    A + AE              
Sbjct: 260 KARAVAGAIDAGEAWLETLRPFVYRRYLDFTALDGLREMKAAITAEVARHDCLDDIKRGP 319

Query: 222 -----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276
                +    +   +I G         RL+  +        +       + TA       
Sbjct: 320 GGIREIEFLAQSLQLIRGGREPSLRERRLLPALRALVTAGQIDQENGQALTTAYRFLRRL 379

Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
           ++      +      PQ  L +    L +   +   L +       R        L P  
Sbjct: 380 ENRLQMLRDAQTHALPQAPLDRERIALGLGYAEWATLLDALAPQRARVTAEFAELLAPRV 439

Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                  + +          + +A +   +      ++A     S       SA      
Sbjct: 440 RATAPDTLADYWRALPAGDAAPLAGMGLSDPGGAHQALADFAHSSGVRGLSDSA----RA 495

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
            L R +   L          A +P    L  + L              A+A LV      
Sbjct: 496 RLDRVMPALLHAATRASQPDAAVPRMLGLLQATLRRTSYLSLLDEQPSALARLVDVLSRS 555

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
               E+  +      EL+  R +    D   L +   D +        +     R     
Sbjct: 556 ALLAERLAAYPLLLDELLDTRISGPLPDRAALHAACADIVHIDDTEAALRELNERRLARS 615

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT--------CLQNVCLDE 568
             +A+  +D   Q +           +    +      ++                    
Sbjct: 616 FRIALATLDGRQQAVESTRQLAWLAEAVVQTVLHLARIEMVAAHGYVSGGSFAIIGYGSL 675

Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                    + +   L     ++  +       A  W   + + +               
Sbjct: 676 GGMELGFGSDLDLVFLYDHPPEVDASDGKRPLEAGRWFARLAQKVMALLAAETGAGRLYD 735

Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +              L    E    +            ++            Q     
Sbjct: 736 IDVRLRPDGGKAALVSSLASYREYQRERAWTWEHQALVRARAVAGDAVLCDAFAQVRRYT 795

Query: 689 EMANG 693
            M   
Sbjct: 796 LMRVR 800


>gi|71654032|ref|XP_815643.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70880713|gb|EAN93792.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 2142

 Score = 40.3 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 49/577 (8%), Positives = 141/577 (24%), Gaps = 32/577 (5%)

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
            E   R     ++    +        + +           DVA+ +  +E         A+
Sbjct: 859  ERRARMNHSREAVRHEEVLLAGERLLHDASGTRFLDAM-DVAVRQFSSE---------AV 908

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
            R++ +E+ ++ +L+ A+R     +   L          A   LS       L S +    
Sbjct: 909  RIAQEEHLERLSLVQAERFECLSLTAPLETQARRSKKDAVEKLSE------LHSTIEKTT 962

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                + A   LV+    +             +  +   R  +     ++ + L   +   
Sbjct: 963  AEGAWRARLALVETEELRVRDGIYNDEAGNRSWWVTDERRQRMELTSLETERLRRAKEVA 1022

Query: 499  QKNNT-------HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            +  +                  EE    A L+ + I             +         +
Sbjct: 1023 RLRDKMGECESVEEQRRIGVQREEASAWATLVREQIRDAANAYKKEGQRRIEETRRERYA 1082

Query: 552  DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            D ++     L+ +  DE      ++ +E           +  +   ++   IE       
Sbjct: 1083 DRSQRCRRALEELLQDEDDDRHYIFEDEREARRRLRRQALQLSCDILEKKKIEENIPSQP 1142

Query: 612  LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            ++  + +        +       E ++       L    E +  +   +   L    +++
Sbjct: 1143 VLASQGIGHGPVNDPSAV--TVDEEKIRQKRLKELAREEELIEAQTRLREAELRIAEEAE 1200

Query: 672  LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
            L  ++ E+     A    +                      +       V    D  +  
Sbjct: 1201 LRARSEEEKRAALAESVRLLREAEQRA----EERIRRARQEAERYVEQEVSRLRDANERQ 1256

Query: 732  KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                        +      +   +  +       +         K       A  A+R+ 
Sbjct: 1257 ATHAAALRAIEEEEKSAVVEAKLRAAEHALREAERRAADDVRRAKAEAEAFAAAEAQRVA 1316

Query: 792  KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
                    +    +  +       + + ++    +       ++    ++    E     
Sbjct: 1317 LEAKRQLQEYREQQEQQLRQKDLEVQQRLRGIEQQ---AQEAILAAKAEASRLAEEAKRR 1373

Query: 852  IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
            ++ +      + +           +           +
Sbjct: 1374 LEELEARRVERAAAVDAAKVSVRAAQQRMREFEESRE 1410


>gi|73948322|ref|XP_541613.2| PREDICTED: similar to Spectrin beta chain, brain 3 (Spectrin,
            non-erythroid beta chain 3) (Beta-IV spectrin) [Canis
            familiaris]
          Length = 2569

 Score = 39.9 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 47/461 (10%), Positives = 107/461 (23%), Gaps = 47/461 (10%)

Query: 271  WNTITEKSTNITSSNTTYSTHPQYS------LAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
            W  + E +              Q+       L  L D   +           S+    R 
Sbjct: 756  WQRLEEAAARRERRLQEARALHQFGADLDGLLDWLRDAYRLAAAGDFGHDEASSRRLARQ 815

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----DVALIEADNEREEAISIAIALR 379
                   +      +         +              V ++EA+    E   +A   R
Sbjct: 816  HRALTGEVEAHRGPVGGLRRQLATLGGASGAGPLVVALQVRVVEAEQLFTEVTEVAALRR 875

Query: 380  MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI--------LT 431
              L +     A+      +         +    + +     L                + 
Sbjct: 876  QWLRDA---LAVYRMFGEVHACELWIGEKEQWLLAMRVPDSLDDVEVVQHRFESLDQEMN 932

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS--RAKNALELVALRGNKNSYDIMDLK 489
            SL+  +  +N  +       HP +      +     R    +ELV  R  + S  ++   
Sbjct: 933  SLMGRVLDVNHTVQELVEGGHPSSDEVRSCQDHLNSRWNRIVELVEQRKEEVSAVLLVEN 992

Query: 490  SLVLDRI-ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
             ++       Q          +  +    +  +  ++  LQ + P       + +     
Sbjct: 993  HVLEVAEVRAQVREKRRAVESAPRAGGALQWRLSGLEAALQALEPRQAALQEEAALLAVR 1052

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS-------------LFSKIIETG 595
              +   +L     +                E                       +  E  
Sbjct: 1053 FPTQAARLHQGAEELGAEWGALASAAQACGEAVAAAGRLQRFLHDLDAFLDWLVRAQEAA 1112

Query: 596  SCIKANAIEWIDIITRLI---DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
              ++      ++    L+        +    +     I+   E+ L +    +  GL   
Sbjct: 1113 GGVEGPLPGSLEEADALLARHAALKEEVDQREEDYARIVAASEALLASDGAELGPGLALD 1172

Query: 653  VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
             W  +              L L  A +     AH +++   
Sbjct: 1173 EWLPHLELGW------HKLLGLWEARRDALVQAHVYQLFLR 1207


>gi|157283913|ref|YP_001468181.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
            SRS30216]
 gi|151363055|gb|ABS06057.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
            SRS30216]
          Length = 1280

 Score = 39.9 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 82/870 (9%), Positives = 198/870 (22%), Gaps = 51/870 (5%)

Query: 13   PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYV-------PTKRAIQELRSEFI 65
            P +   R +    +   +     +  L P    +V +         P    +        
Sbjct: 163  PGTDLGRALATGRMREVIDAWEAWTRLLPASALAVEVVCHLTREGHPASVGVTARVLRAA 222

Query: 66   EITGKKSTILPIIKSLG-------DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118
               G  + +   ++ L        DV +       L   +    +S   +       ++ 
Sbjct: 223  AAVGIPTVLSNAVRLLHPGDVPTADVGDAVAALRGLEELHAAHALSPNAQAWLKPPHLME 282

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE----KKWEDL--HAL 172
               +       +                 LA+     ++           +   L   A 
Sbjct: 283  DLAREIATAAGVEHRGRDHAGGLLERTAALAERCRLDLERDLGWGRARVPEPAVLGIDAA 342

Query: 173  KNEKYGMW-WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231
                     +  A   L+  +     R     + + V      ++AE   + +       
Sbjct: 343  ATSAGDPHGYAAALGMLRARADAGIGRRHPGASLAKVRAVQERVQAELAVVDRLNYATYF 402

Query: 232  IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
            +A S  +       +   A       VL  L         +        I+    T    
Sbjct: 403  LAVSEATRLIHGLGVRATARGSGVGSVLLWLLGVSNVDPLDQGLLFERFISDRRETLPD- 461

Query: 292  PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
                    LD    +R D+ R           +++ +        +       L  +   
Sbjct: 462  ------IDLDVESARRHDIYRAIRDRFGAERVTLMATTQAYRARGAVRAAGLALGVEPEV 515

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRF 409
            + +  + +  + A +   EA++    LR   +   + ++  L+        R+   L+  
Sbjct: 516  VDEVAASLRGVSA-SRVREAMAELPELRELAELVRSHRQLDLLVDVTATLDRLPRHLSMH 574

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
               + +S    L+ T   +     +       D +     +K  +               
Sbjct: 575  PCGVILSDASLLTRTPVQACGIEGMAMSQFDKDDIDPMGWLKLDVLGVRMQSAIAYTLTE 634

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                 A+  N     +    +      AT              +                
Sbjct: 635  IERTAAVPENMQPAHVTPASANPAATAATAPAAGLPALANLVHAYRAPATEAPPAAAPRA 694

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
              T              + +  +  + T T          ++     F+    +   +  
Sbjct: 695  EPTAPGAVPDLDAIALDDHATFELIRSTHTLGVFQIESPGQRELLGKFQPRAFSDLVIDV 754

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS----------------STLFILGT 633
             +   G         +++     +     +                        + IL  
Sbjct: 755  ALFRPGPMAGDMISPFLEGHHGWVATGGPRRLPHPDLTPILSETHGVVIFHEQVMRILDV 814

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH---DFEM 690
                 L    +    L++         +   +   +          +   AAH    F  
Sbjct: 815  FTGCGLARADVWRRHLSDPDARVEVEADFRTAATARGYPRDVVDAVWKLIAAHGGFGFAR 874

Query: 691  ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750
            A+       T             ++L  LL      +   L       L           
Sbjct: 875  AHAAAFAAITYQSAWLKAHY-PVQFLTGLLEHDPGMYPRRLLVAEARRLGIAILPVDVQT 933

Query: 751  QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810
                 R +   P            I+  +     ++A  + ++     F    D  DR  
Sbjct: 934  STDVWRAELPAPTGQSAGGERRWGIRPPLTVVKDLHAAEVERIVATQPFADVGDFRDRAR 993

Query: 811  LFHNIITELIKKRINKNTPEINHLMKQIID 840
                 +  L +     +   ++ ++   + 
Sbjct: 994  PRRPTLIRLARLGALDDLAGLDPVLGASLR 1023


>gi|237812885|ref|YP_002897336.1| linear gramicidin synthetase subunit D [Burkholderia pseudomallei
            MSHR346]
 gi|237502873|gb|ACQ95191.1| linear gramicidin synthetase subunit D [Burkholderia pseudomallei
            MSHR346]
          Length = 2979

 Score = 39.9 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 56/705 (7%), Positives = 147/705 (20%), Gaps = 54/705 (7%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
              R   L A +P       + A  + +++     +           +   +   A     
Sbjct: 1085 PARDAALGAVAPRNDTQRALCAIWQAVLRVPALGVT-DNFFAVGGDSILSIQAAARAREQ 1143

Query: 256  AIVLPGLD---CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
             IV    D         +   +  +     +   +    P   +      +D    D   
Sbjct: 1144 GIVFSARDIFRHQTVELLAAHVRWQQAPDEARRASAGDMPLLPIHHWFFEVDSTHVDHYH 1203

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
               + +   G      +++L    +      +     P   +        EA +    A 
Sbjct: 1204 QSRLLDVPAGVDAAFVRAWLAALVARHDALRLRLRDTPAGWRA----HFAEAPHADASAR 1259

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
             +   +  +   +        A        +  +      + ++A +    T    +L  
Sbjct: 1260 LMVCDVAWAGAPD-------AALDAFFADARRGVRLADGPLFVAALVAAGATGRGRLLLI 1312

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
              +A+     +  I   ++   A++           +       R    + D   L +  
Sbjct: 1313 GHHAVVDGVSWRVIVADLRRTFAQWPALRPDAPGPASDAYQAWARALVAAADSPALHAER 1372

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
               +   +              +    A  +    L              +         
Sbjct: 1373 AHWLRVLRAPAPALRLDRAAGGDATRRATRIGAVSLNAADTRALLADTHRAYRTQTIELL 1432

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
               L +   +    D  R        E          + +            +      L
Sbjct: 1433 LAGLLLAFRRWQGHDALRIALEGHGREADALAHYGAERGLPDVGETVGWFTSYYPQWLTL 1492

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                +       S    I+             I  G+   V           +   +   
Sbjct: 1493 AGAASAPAPAADSVAAAIMAVKTQYRATPRHGIGYGILRYVAGDPELAAEAAAHAPEIVF 1552

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN-----NIPTIASRWLQRLLVLGGTDF 727
            N           A    + + +       +         +           +   G    
Sbjct: 1553 NYLGQFDVANDEAAGIAVLDLSSRDDIAAARPREHALGIDGGVKDGCLAFEIDYSGAAFD 1612

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
             +++   G  ++   R++    K     RP P     A                      
Sbjct: 1613 DESIAAFGAHFMHALREIAAHCKACAAWRPTPEDFPLAAVTQAELDVWHA---------- 1662

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                                     H  +  L      +     + L+ +   ++  + +
Sbjct: 1663 ------------------------RHPSLETLYPATAIQRGMVFHSLLPKQASAYTNQVH 1698

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                              + LE    ++++        P ++ + 
Sbjct: 1699 ARVGGGTFDAARLRHAWQTVLERHAALRTAFVGFEREQPLQIVLA 1743


>gi|134277975|ref|ZP_01764690.1| non-ribosomal peptide synthase [Burkholderia pseudomallei 305]
 gi|134251625|gb|EBA51704.1| non-ribosomal peptide synthase [Burkholderia pseudomallei 305]
          Length = 2979

 Score = 39.9 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 57/705 (8%), Positives = 148/705 (20%), Gaps = 54/705 (7%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
              R   L A +P       + A  + +++     +           +   +   A     
Sbjct: 1085 PARDAALGAVAPRNDTQRALCAIWQAVLRVPALGVT-DNFFAVGGDSILSIQAAARAREQ 1143

Query: 256  AIVLPGLD---CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
             IV    D         +   +  +     +   +    P   +      +D    D   
Sbjct: 1144 GIVFSARDIFRHQTVELLAAHVRWQQAPDEARRASAGDMPLLPIHHWFFEVDSTHVDHYH 1203

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
               + +   G   V  +++L    +      +     P   +        EA +    A 
Sbjct: 1204 QSRLLDVPAGVDAVFVRAWLAALVARHDALRLRLRDTPAGWRA----HFAEAPHADASAR 1259

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
             +   +  +   +        A        +  +      + ++A +    T    +L  
Sbjct: 1260 LMVCDVAWAGAPD-------AALDAFFADARRGVRLADGPLFVAALVAAGATGRGRLLLI 1312

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
              +A+     +  I   ++   A++           +       R    + D   L +  
Sbjct: 1313 GHHAVVDGVSWRVIVADLRRTFAQWPALRPDAPGPASDAYQAWARALVAAADSPALHAER 1372

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
               +   +              +    A  +    L              +         
Sbjct: 1373 AHWLRVLRAPAPALRLDRAAGGDATRRATRIGAVSLNAADTRALLADTHRAYRTQTIELL 1432

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
               L +   +    D  R        E          + +            +      L
Sbjct: 1433 LAGLLLAFRRWQGHDALRIALEGHGREADALAHYGAERGLPDVGETVGWFTSYYPQWLTL 1492

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                +       S    I+             I  G+   V           +   +   
Sbjct: 1493 AGAASAPAPAADSVAAAIMAVKTQYRATPHHGIGYGILRYVAGDPELAAEAAAHAPEIVF 1552

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN-----NIPTIASRWLQRLLVLGGTDF 727
            N           A    + + +       +         +           +   G    
Sbjct: 1553 NYLGQFDVANDEAAGIAVLDLSSRDDIAAARPREHALGIDGGVKDGCLAFEIDYSGAAFD 1612

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
             +++   G  ++   R++    K     RP P     A                      
Sbjct: 1613 DESIAAFGAHFMHALREIAAHCKACAAWRPTPEDFPLAAVTQAELDVWHA---------- 1662

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                                     H  +  L      +     + L+ +   ++  + +
Sbjct: 1663 ------------------------RHPSLETLYPATAIQRGMVFHSLLPKQASAYTNQVH 1698

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                              + LE    ++++        P ++ + 
Sbjct: 1699 ARVGGGTFDAARLRHAWQTVLERHAALRTAFVGFEREQPLQIVLA 1743


>gi|108757142|ref|YP_632586.1| non-ribosomal peptide synthetase/polyketide synthase [Myxococcus
            xanthus DK 1622]
 gi|108461022|gb|ABF86207.1| non-ribosomal peptide synthetase/polyketide synthase [Myxococcus
            xanthus DK 1622]
          Length = 2502

 Score = 39.9 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 39/508 (7%), Positives = 110/508 (21%), Gaps = 18/508 (3%)

Query: 211  QIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
            + A          +  K     I          +   +  VA   +  + L      +  
Sbjct: 1981 RNATEETLVRVWTEVLKRREVGIHDNFFELGGDSLLAIRVVARANDAGLRLTARQLLLHQ 2040

Query: 269  AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328
             I                T    P          + +     + L +     +  +  + 
Sbjct: 2041 TIAQLSEVIGDQPEPPAPTAVGGP----------IPLTPSQRRFLESDVPAPHHWNRSLL 2090

Query: 329  KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
                 P  ++     +      +       V       + +   +           +   
Sbjct: 2091 LDVHEPLQTEAFQEALRLLLARHDALRLRFVRHESGWKQFDAGSAATPPFSRVDLSSVPD 2150

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            +AL  A  + A+ ++  LT     +   A   L       +L      I     +  +  
Sbjct: 2151 TALPPAIESAAQALQRSLTLTDGPLFRVAAFDLGAHRPGRLLFIFHFLIADGVTWALLTD 2210

Query: 449  LVKHPLAKFGFPEKYLSRAKN---ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
             ++    +    +                 L    ++  +    +  L ++         
Sbjct: 2211 ELQEAYRQILEGQSIQRPPAPVSFRAWAEHLHALAHTPRLEQEATAWLSQLEGACGRLPH 2270

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
             H  +      + + + L +   Q +    +   +         ++      +       
Sbjct: 2271 DHPGTNSEGSMRSVRMSLREDETQRLLQHASATRSGLEAVLLTPLAHTLSQWMGGAALRV 2330

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                     L   E  +T   +     +    +       +      +     +   +  
Sbjct: 2331 DLGRHGRAELEGLEPTRTAGCMA---ADVPVRLDVVGASGLSQALEWVASSLRQLPGQGL 2387

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
                +     +  L      L G        +            +  +  T      + +
Sbjct: 2388 GHGLLRYMNGTEGLARRLGALPGAEVSFDYMSQRMLTENPAFRLARESTGTDRDPSARRS 2447

Query: 686  HDFEMANGTRHLIYTRSLRENNIPTIAS 713
            H F++       +     R +N     S
Sbjct: 2448 HVFQLIAAVVDGLLQFEWRYSNELHEPS 2475


>gi|325963793|ref|YP_004241699.1| exonuclease SbcC [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469880|gb|ADX73565.1| exonuclease SbcC [Arthrobacter phenanthrenivorans Sphe3]
          Length = 1023

 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 57/551 (10%), Positives = 130/551 (23%), Gaps = 9/551 (1%)

Query: 85  VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
            E +     L      P      RL  L   + + R +L    ++    S        A 
Sbjct: 218 AEAEADPLELDGAGAPPVEDTAARLTWLENAVGLRRQELAGRAEEAEAGSNGCRNAVEAE 277

Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW-WLLAADFLKIASKYWTERLVE-L 202
           A    ++    +D  E  +   E    L   +         A+ L    +       +  
Sbjct: 278 AAR--EDRRRKLDSAEARKAAAEQAAPLLEGQLLRLSRHRKAEVLDAQLRALDSADAKVR 335

Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
           +A++     + L+R  A    + ++  +  +    +      +    A       +L  +
Sbjct: 336 SAANAAESAVTLLRLAAGEDAELSRLDLDFSADFAAAGTAQPVAGADAELGRLRSLLAVV 395

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           +  +P               S            LA+     +  + +  R+     E+  
Sbjct: 396 EARLPDEDRLLA---LRKRHSVLAKKREELAAVLARDGSRTEELQAERTRISGGLQELEQ 452

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
           RS  ++        +      +         +    V   E+  ++ EA    + LR   
Sbjct: 453 RSAAVALRRKEAAAAQELLDVVKRYASAVSARNLVKVRHDESREQQLEAKRRWLDLREQR 512

Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
             N          +     V               G  L+          +  A     +
Sbjct: 513 LANAAAELAAGLVQGEQCPVCGSHDHPDPAAGGHGGPALAQEEE--DARLVHEAAEAAFN 570

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
            +A        L      +   +    AL+     G   +        L L R+   +  
Sbjct: 571 RVAAEWGNASQLVAVLAGQGGDTPEAAALDAAESAGRAAADAEAAEAELRLSRLRLDELA 630

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
             +   Q   +  + ELA                  +      G+ S+    +     + 
Sbjct: 631 AALAAVQEARTGTEGELARTAASLEDVSEQAAALDVSLAELRGGHRSLPKRLRALEDAVA 690

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
            +             + +           +       A       +     +      + 
Sbjct: 691 VLAKAVEAHGHLGRMQAQHAEAREELELALPAAGFSTAVEAREQLLDGAAAEALESGIRA 750

Query: 623 EKSSTLFILGT 633
            +     +   
Sbjct: 751 AQDEEAKVAEL 761


>gi|271965349|ref|YP_003339545.1| hypothetical protein Sros_3885 [Streptosporangium roseum DSM 43021]
 gi|270508524|gb|ACZ86802.1| hypothetical protein Sros_3885 [Streptosporangium roseum DSM 43021]
          Length = 1330

 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 51/492 (10%), Positives = 116/492 (23%), Gaps = 24/492 (4%)

Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
              EA   A+ L    +  +++  L     +L  R ++ L R  +   +  G P+  T  
Sbjct: 505 PAVEADLAALRLPCPDNPERREVRLDPLRSDLDARREVALQRL-LLCGVGYGEPIEVTGT 563

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
                            +     +              +  +      A  G      + 
Sbjct: 564 GDSTALTTRWRLSWTPAVPALLDLAGVRGVTLAQAAAGTLRETFRRESAEGGPTCGLILS 623

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            L++     +     +       +  +       +  +D +       +   T +     
Sbjct: 624 GLRAAARCDLPELVADRLADAAVALPATATLAELLDALDLLEALRREHLPGTTPEGREQA 683

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPN----LWFEEEGKTLSSLFSKIIETGSCIKANA 602
                   +  V  L  +   +  +       L      + L       +   +   +  
Sbjct: 684 AELAGTLLEAAVRALPGLAGSDQPQDAAALVALATRAGEERLGLRMDDTLAALTGTASPL 743

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
           I+   +  R++        +   +  ++         +  + +L G+     P   +   
Sbjct: 744 IQGAALAARVLLDLDGPGTLGARAAGWVGAATGPDGRHRLSRLLTGVLTAAGPLLQSAPA 803

Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHD--FEMANGTRHLIYTRSLRENNIPTI-----ASRW 715
            L  +M     L   +      A    F+            ++ E     +     A   
Sbjct: 804 ALDPLMDRIDGLADRDFLDRLPALRGGFDTLTPAGRTRLLGAVSERLGDRLDLTLSAPPG 863

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKL-----DYTTKQPHYKRPKPFPPLEAQPRTY 770
           L  L           L             L     D        +RP          +  
Sbjct: 864 LLALWSAADAAGLAALHALRLPVPASAPALAGTPSDAPEPPAPDRRPARDGEEVEDTQEP 923

Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
              E   +  DP     R   + +     +  P    R T        L+  R ++  P 
Sbjct: 924 PSPEAGAVTEDP-----RTPARPETAEVTEAGPGARRRFTPADRW--RLLLGRESERLPA 976

Query: 831 INHLMKQIIDSH 842
                 + +D  
Sbjct: 977 GARSYARALDEL 988


>gi|33603344|ref|NP_890904.1| hypothetical protein BB4370 [Bordetella bronchiseptica RB50]
 gi|33577468|emb|CAE34733.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 819

 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 63/623 (10%), Positives = 145/623 (23%), Gaps = 19/623 (3%)

Query: 71  KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL-PDIIKD 129
              +LP   +L  +      A +LL + L  P     + L  A         L P     
Sbjct: 71  APGVLPE--TLRRLAALAPRAVILLPHELPDPYPRGTQALCRAWAAENRCELLGPRSFGA 128

Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
             P + L+L   P+ A      L      I      W +   +           A   L 
Sbjct: 129 QRPHAGLNLSQHPSLARAGRVALVAQSRSIMAAVMDWAEDVHIGFSIAVSLGDEAVVGLS 188

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII--AGSTGSIPATARLMS 247
               Y        +    +          +      +  P+I+  AG   +  A A   +
Sbjct: 189 QVLDYLASDSRTDSIVLYIEDVGPAREFMSALRAAASVKPVIVLKAGRADANGADAVFDA 248

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +        V   +       +            +  +  S  PQ +L  +     + +
Sbjct: 249 ALRRA-GAVRVRYFVQLFSAVKVLGYTRRPRGRRVALFSNGSGPPQLALDLIGPDAAVLQ 307

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
             +      +          + + +   T                      V ++ A + 
Sbjct: 308 AKLSPATQRTLADMLEPDAATANPVITYTPLTPERIQAILDCLLDDAGVDGVLVLLAPDA 367

Query: 368 REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
             +  ++A  L       +K            R ++  L          AG     T  S
Sbjct: 368 LADMPAVARQLAQLAPRARKPVVSCFMGDAGMRPLRRMLD--------DAGTSAFRTPES 419

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
           +        +   +    +    + P      P+   +R          R   +  +   
Sbjct: 420 AA--DAFGVLATHHYNQQLLLQTQPPEPPGLLPDSAGARDIMGQARAQGRRELDPIEARA 477

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
           L       +            +SR               I           +  +     
Sbjct: 478 LLDAFYVPLREGPLGVRPIEAESRPMAIRVRRDPHFGPVIRFGAGGPDAVLSGADRGMDL 537

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             ++ +    +     +              E  +      S+++     I++  I+ + 
Sbjct: 538 PPLNGFLARQMIERSRLWRRVLAPQVTNAAAEALQHALVQVSEMVSELPDIESVDIDPLY 597

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                +    ++  + +              +         +    +   T    ++ R 
Sbjct: 598 AGETQLRAGGLRIVLCEREATVSPQLSGYAHMAIHPYPARLVQARRFDDGTP---WVIRP 654

Query: 668 MQSDLNLKTAEKYIGQAAHDFEM 690
           ++ +      E   G +     M
Sbjct: 655 IRPEDGEPLQEFIRGLSERSRYM 677


>gi|28869353|ref|NP_791972.1| pyoverdine sidechain peptide synthetase IV, D-Asp-L-Ser component
            [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28852594|gb|AAO55667.1| pyoverdine sidechain peptide synthetase IV, D-Asp-L-Ser component
            [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 2875

 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 76/729 (10%), Positives = 178/729 (24%), Gaps = 66/729 (9%)

Query: 126  IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
              +  + ++ +  P+   +AI L   L  +I+          D   L   +    W  A 
Sbjct: 1103 PERQHWNQALMLKPLQTLDAIPLQAALTALIEQ--------HDALRLGFTQQNGQWQAAF 1154

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
              L      WT  L        V     L   EA+  +    GP++ A          RL
Sbjct: 1155 GALNTRDVLWTHEL------DSVERLSELAD-EAQRSLDLKNGPLLRAVLIDLPQGEQRL 1207

Query: 246  MSTVANHPNGAIVLPGLDCHIPT---AIWNTITEKSTNITSSNTTYSTHPQ--YSLAKLL 300
            +  + +     +    L   +     AI           TSS  +++ H Q       L 
Sbjct: 1208 LLVIHHVAVDGVSWRVLLEDLQQAYVAIVAGRPLSLPAKTSSLKSWAEHLQAYAQSPALE 1267

Query: 301  DFLDIKREDVKRLGNVSN--EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
              L   +  ++ + +       +G         +    +      +L++     +   +D
Sbjct: 1268 QELGYWQAQLQEVSDALPCDYPHGGQQQKHALSVATQLNGELTRQLLQDAPAAYRTQIND 1327

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
            + L         A  ++              ALI  + +    +   L         S  
Sbjct: 1328 LLL------TALARVVSRWTAQPH-------ALIRLEGHGREDLFDALDITRTVGWFSNL 1374

Query: 419  IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS--RAKNALELVAL 476
             P+  T  +++  S++    +         L   P    G+         +         
Sbjct: 1375 YPVRLTPQATLAESIMTIKEQ---------LRAVPDKGIGYGALRYLGSESARRTLQALP 1425

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
            +G+     +         + A    +                   L        +    T
Sbjct: 1426 QGSIVFNYLGQFDGSFDAQGALFTPSADSSGASQSADAPLAAPLSLNGQVYGGQLRLSWT 1485

Query: 537  YKTNKNSTCGNLSISD----WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592
            +            ++D      +  +       +                 LS L     
Sbjct: 1486 FSGAVFERDTVQRLADEYAVELQQLIAHCTTEGVAGVTPSDFPLARLTQSQLSRLPMPAA 1545

Query: 593  ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652
            +         ++   +   L + E           + + G     +  F       L+  
Sbjct: 1546 QIEDIYPLAPMQQGMLFHTLFEQEAGNYI--NQMRVEVSGLD---VPRFRAAWQATLDAQ 1600

Query: 653  VWPKNTAKNPFLSR--VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710
               ++   +       V+  D+++   E+              +  +    +        
Sbjct: 1601 EVLRSGFVSHLEQSLQVVLRDVSMPFVERD--------ARGQASEWVDDWANADRQQGFD 1652

Query: 711  IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770
            +    L RL VL   +    L       L           +   +      P +      
Sbjct: 1653 LTQGPLLRLAVLRTGEQTHQLIYTSHHILMDGWSSSRLLGEVLQRYSGQTLPRQVSRYRD 1712

Query: 771  SFSEIKQL-INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
                +++         +  ++  LD      +     + G    + +  +  +   + + 
Sbjct: 1713 YIEWLQRQDAALSERFWTGQLAGLDEPTRLVQAFKAPENGQGHGDYLQLIDAENTRQLSE 1772

Query: 830  EINHLMKQI 838
                    +
Sbjct: 1773 FAREQRVTL 1781


>gi|297163421|gb|ADI13133.1| putative type I polyketide synthase WcbR [Streptomyces
            bingchenggensis BCW-1]
          Length = 2512

 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 64/664 (9%), Positives = 142/664 (21%), Gaps = 41/664 (6%)

Query: 122  KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181
             L       +    L      A    L   LA +++       + +    L  +      
Sbjct: 1273 GLLTDPAAPFTMDDLVTTGMAARHRGLMDVLATLMERHGHLAVEPDGRWRLTPQTDRAD- 1331

Query: 182  LLAADFLKIASKYWTERLVELN-ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240
                + ++ A+      + +L  A+    +  AL+R EA           ++     + P
Sbjct: 1332 ----ELMREAATRTPAFVHQLALAAHQGRHLGALLRGEAPAGTAAEPTANLLEQYQEAAP 1387

Query: 241  ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------THPQ 293
            A       V +    AI     D  +        +   T                     
Sbjct: 1388 AHRFHNRLVQSLVGEAIRDWPADRTLRVLEIGAASGGVTAALLPMLPPERTRYTFTDPSA 1447

Query: 294  YSLAKLLDFL-DIKREDVKRLGNVSNEMYG--RSMVISKSFLPPDTSDMRNTDILENKIP 350
             SLA+           D + LG  ++                        +      ++ 
Sbjct: 1448 ASLARARSRFSPYDFIDYRTLGLDADPAEQGFTHHGYDIVIAANSLRGTADLQAAVRRVA 1507

Query: 351  NIQKCFSDVALIEADNEREEAISIAIA----------------------LRMSLDENKKK 388
             +      +  IE  +    A  +                             L E    
Sbjct: 1508 LLLAPGGHLLGIECHDPEMLAPIVGTLGGFPARTDTEPPQDCILTPHESWAGLLKECGFT 1567

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
              + +   +        +       +      L      +    +  A  +     A+A 
Sbjct: 1568 EVVRSGADSEPAFTDHSMFLASTPREPVPQPGLPDATAGTSFLVVTEAEGEQPLARAVAD 1627

Query: 449  LVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             +    ++         +R +N L         +   ++ L      R            
Sbjct: 1628 ALTERGSRARLVPGEAEARDENHLLCANDLAGTDLAVVLLLADAGEARADVLVAQAARRA 1687

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
               R    +           L  +T       +          + W  +     +   L 
Sbjct: 1688 DLLRSIAAECARLPRGSRAALWLVTRPSGALPDPAGITHPGDAAMWAVMRCLANEQPELT 1747

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS- 626
              R       +     L  L  +++      +         + R       +        
Sbjct: 1748 GRRVSLARSHDPAADAL-RLTRELLFADGEDEIVLTVADRFVPREQPLSVPRHGAGTGPF 1806

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
             L +     S  L ++ +       G    +        R +   + L  AE        
Sbjct: 1807 ALRVHHPGLSYRLVWEEMASPQPGPGQVAIDVRAVGLNYRDVMQAVGLLPAEAREDVPRE 1866

Query: 687  DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
                   +  +           P      + R  +   T       +R   ++ +     
Sbjct: 1867 VDLGLECSGVVSACGPGVTVFAPGDRVAGMVRASMGSSTVTMARSIRRIPDHMSFAEAAT 1926

Query: 747  YTTK 750
              T 
Sbjct: 1927 APTA 1930


>gi|33593910|ref|NP_881554.1| hypothetical protein BP2977 [Bordetella pertussis Tohama I]
 gi|33563984|emb|CAE43248.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332383329|gb|AEE68176.1| hypothetical protein BPTD_2945 [Bordetella pertussis CS]
          Length = 819

 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 63/623 (10%), Positives = 145/623 (23%), Gaps = 19/623 (3%)

Query: 71  KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL-PDIIKD 129
              +LP   +L  +      A +LL + L  P     + L  A         L P     
Sbjct: 71  APGVLPE--TLRRLAALAPRAVILLPHELPDPYPRGTQALCRAWAAENRCELLGPRSFGA 128

Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
             P + L+L   P+ A      L      I      W +   +           A   L 
Sbjct: 129 QRPHAGLNLSQHPSLARAGRVALVAQSRSIMAAVMDWAEDVHIGFSIAVSLGDEAVVGLS 188

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII--AGSTGSIPATARLMS 247
               Y        +    +          +      +  P+I+  AG   +  A A   +
Sbjct: 189 QVLDYLASDSRTDSIVLYIEDVGPAREFMSALRAAASVKPVIVLKAGRADANGADAVFDA 248

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +        V   +       +            +  +  S  PQ +L  +     + +
Sbjct: 249 ALRRA-GAVRVRYFVQLFSAVKVLGYTRRPRGRRVALFSNGSGPPQLALDLIGPDAAVLQ 307

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
             +      +          + + +   T                      V ++ A + 
Sbjct: 308 AKLSPATQRTLADMLEPDAATANPVITYTPLTPERIQAILDCLLDDAGVDGVLVLLAPDA 367

Query: 368 REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
             +  ++A  L       +K            R ++  L          AG     T  S
Sbjct: 368 LADMPAVARQLAQLAPRARKPVVSCFMGDAGMRPLRRMLD--------DAGTSAFRTPES 419

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
           +        +   +    +    + P      P+   +R          R   +  +   
Sbjct: 420 AA--DAFGVLATHHYNQQLLLQTQPPEPPGLLPDSAGARDIMGQARAQGRRELDPIEARA 477

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
           L       +            +SR               I           +  +     
Sbjct: 478 LLDAFYVPLREGPLGVRPIEAESRPMAIRVRRDPHFGPVIRFGAGGPDAVLSGADRGMDL 537

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             ++ +    +     +              E  +      S+++     I++  I+ + 
Sbjct: 538 PPLNGFLARQMIERSRLWRRVLAPQVTNAAAEALQHALVQVSEMVSELPDIESVDIDPLY 597

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                +    ++  + +              +         +    +   T    ++ R 
Sbjct: 598 AGETQLRAGGLRIVLCEREATVSPQLSGYAHMAIHPYPARLVQARRFDDGTP---WVIRP 654

Query: 668 MQSDLNLKTAEKYIGQAAHDFEM 690
           ++ +      E   G +     M
Sbjct: 655 IRPEDGEPLQEFIRGLSERSRYM 677


>gi|319950558|ref|ZP_08024467.1| putative ATP-binding protein [Dietzia cinnamea P4]
 gi|319435752|gb|EFV90963.1| putative ATP-binding protein [Dietzia cinnamea P4]
          Length = 1071

 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 55/633 (8%), Positives = 147/633 (23%), Gaps = 18/633 (2%)

Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305
           +  +      +   P     +   + + I +++      +  +        A     L I
Sbjct: 116 VKRLHGVREHSSDEPTDLPGLFGYLRSGIDKRALKREIPDVRFHDSYSAFAAAFRRRLGI 175

Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365
             E  + L + +      S +                          +   +  ++++  
Sbjct: 176 ASESAQLLLHRTLSAKSLSSLDQLFRDFMLEEPGTFAVADRAVAQFSELREAHRSVVDVR 235

Query: 366 NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425
            +      +A  LR S +     +  + A+      V+  +T   +  ++          
Sbjct: 236 KQIAHLTPLAD-LRASRNRVLALADELDAESQAFPAVQAAVTIELVEEELRTARGALVAA 294

Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
            S+I ++      +      I   ++   +     +++      ALE  A    + +   
Sbjct: 295 ESTIASARDRLDVRRTAADDIRARLRG--SAGAGRDEFARELDRALEHAADVSARRARAE 352

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
            +++ L      + ++   +     R   E +       + +      L           
Sbjct: 353 TEVERLGGALPTSAEDFAALLATLEREDAEQEAERARDRETLRAVAGSL---------NE 403

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605
              S+ + T      L++    + R L       E   LS+           +      W
Sbjct: 404 EQRSLEEVTAQLQALLRHRSNIDSRLLAARDLVSEAAGLSARELPFAGELLDVPTEHARW 463

Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
              I R++ G      +       +   ++S  L    +     +             L 
Sbjct: 464 RPAIERVLSGFARTMLVPDHLRDRVAAAVDSTHLGVRLVYEVVDHGDDSAARRTGPHSLV 523

Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
           R ++              AA            + T +    +   +    L R       
Sbjct: 524 RKVRPAAGPFLQWLNRRLAAEFDVA------CVETAAELAQHDKAVTLHGLIRRGARFEK 577

Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
           D    +       L                  +       +          Q      A 
Sbjct: 578 DDRRRIDDPAAFQLGSMDDSKVEALTTLRNEIRARIDTHERQWAGLDDLDAQRRARQRAA 637

Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845
                L+ + +     +               +  +    +         +    + ++ 
Sbjct: 638 ATLLGLRWEELDADTAEDRARAARDRLDQWREQHPEVAEMERDLRAAEEAQSRAQAEYDS 697

Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
            N    +         +       HE +     
Sbjct: 698 ANRAGAVAASVVEGLERRLADLTGHERRDVDEG 730


>gi|319763078|ref|YP_004127015.1| molybdopterin oxidoreductase [Alicycliphilus denitrificans BC]
 gi|317117639|gb|ADV00128.1| molybdopterin oxidoreductase [Alicycliphilus denitrificans BC]
          Length = 930

 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 67/671 (9%), Positives = 149/671 (22%), Gaps = 45/671 (6%)

Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
           ++P      L R   +         II+     +  A    +       +   +L G+  
Sbjct: 176 ANPAWAHPILFRRIEDARRANPALKIIVCDPRRTDSAALADLHLALRPGSDLWLLHGMLR 235

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED----VKRLGNVSNEM 320
            +    W      + + +      +   Q +   +     I   D     +    V    
Sbjct: 236 CMVEQGWTDPAYIAAHTSGWTALQAQVAQATPEAVWQHCGIAPADLLQAARWFAGVEGGS 295

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
             R   +S      + S     +       ++             +   +  +       
Sbjct: 296 GPRRPTLSLYCQGLNQSARGTDNNAALIHLHLACGQIGKPGAGPFSLTGQPNA------- 348

Query: 381 SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
                 ++   +    +  R +     R    +    G+P            +  A  + 
Sbjct: 349 ---MGGREVGALANQLSAHRNLAD--PRHRAEVATLWGVPEVPAAPGKAAVEMFEAAAEG 403

Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR---GNKNSYDIMDLKSLVLDRIA 497
              + +  +     A     +  + RA    E V ++       +    DL         
Sbjct: 404 --HIKLLWIACTNPAHSLPDQTLVRRALQRAEFVVVQDAYAGVATARFADLLLPAATWGE 461

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDH--ILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            +   T+     SR+            D   + Q    L      + +  G         
Sbjct: 462 KEGTVTNSERRISRVRAAVPAPGQAWADWRIVTQVARRLQPLLPQRAALPGLFPYEGPEA 521

Query: 556 LTVTCLQNVCLDEHRKLPNLWF-EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           +     ++    +       W   E         +   E  + + A+             
Sbjct: 522 IWNEHRESTRGRDLDITGLDWALLEAAPRQWPCPTGQAEGTARLYADGRFATADARARFV 581

Query: 615 GETVKPKIEKSSTLFILGTLESRLLN-FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
            +      E +   + L  L  RL + +  +   G  E +W         +     + L 
Sbjct: 582 PQQPGGVAEPTDARYPLALLTGRLRDQWHGMSRSGTVESLWAHAGEPVAQMHAADMARLG 641

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
           L+  +                     T        P  AS  L    V     + D +  
Sbjct: 642 LRDGDL-----------------AYLTSRRGSIVAPARASDELASGQVFLPMHWGDEVLG 684

Query: 734 RGQ---CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
                   L     L    + P   +P+         +      +      P A   R  
Sbjct: 685 GASSTGRRLAGVNALTTAARCPQSLQPELKHAAIKVLKAELPWSLWAQAWLPLAQVHRAR 744

Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
             L  +         +  G        +L     +     +   +  ++D          
Sbjct: 745 EALQSLMDAFPFASCSLFGRPGTGTGLQLRAGAHHAPDEALVERIAGLLDLQGAGLLSYR 804

Query: 851 HIDIIWRHLFH 861
                      
Sbjct: 805 DARRGQWRRAR 815


>gi|170732709|ref|YP_001764656.1| cellulose synthase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169815951|gb|ACA90534.1| cellulose synthase operon C domain protein [Burkholderia
           cenocepacia MC0-3]
          Length = 1297

 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 78/663 (11%), Positives = 160/663 (24%), Gaps = 47/663 (7%)

Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
             S  +   +    + LA +  +  D     +++ +    L+ +   +        L   
Sbjct: 253 AGSDPAYLDALHAYLALAPDDTEFRDRAAGLDQQRDAQRRLERDPDYIAQQRGLQALARG 312

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
                + L+   A +      AL       L +G       A  T +             
Sbjct: 313 DLAAADPLLARAARTRSDDADALGGLGLLRLREGRHDEAR-ALFTRAAARATDQRGKWQG 371

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
               A     L      A      +      ++      +P   L +L D L  +R+  +
Sbjct: 372 LARTAQFWGLLAQGREAASAGRPRDAERAARAALAMQPDNPDAKL-QLADALLAQRDWAR 430

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN-------IQKCFSDVALIEA 364
               +   +  RS  +S         +          + +              +  +  
Sbjct: 431 AEPLLRGLLAARSPSLSAVRDTATLYENTGRADRIGPLLDALQGRVTGADDRRTLDDLRG 490

Query: 365 DNEREEAISIAIALRMSLDENKKKSAL-ITADRNLARRVKLELTRFGINID-----ISAG 418
           D    EA ++A          + ++A+    D    R     L R           +  G
Sbjct: 491 DVLANEARALAEKGARGPAAQRYEAAVHAAPDAPWTRFALARLYRDMGLPQLGRTVMDDG 550

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
           + LS T       +L                           +   ++A  A    A R 
Sbjct: 551 LALSDTPEMRYANALYR---------------------NSLDDVVGAQAALAPVDDAHRS 589

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
           +        L +      A   +        +      +  A    D +       +   
Sbjct: 590 DGMRALARKLDAESALADARGAHARGDRAAFAATLAHAQASAPDDPDMLAAIGAQWIDAG 649

Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
             +    G   + DW        +       R    L        L++    +    S  
Sbjct: 650 EPER---GLAPLRDWIAAH--PREADADVRLRYGDLLGRAGRDDALAAWLDTLRGDPSLT 704

Query: 599 KANAIEWIDI-ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD---TLILGGLNEGVW 654
            A      D  +  ++         +  +    L    S     D    L L  L     
Sbjct: 705 PAQTARLEDQSLRLVLRQTDDAIARQDYAQARTLLDRASPAGRADKRYALELADLERAQG 764

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
             + A++     V ++  +  T              A     +    +   ++       
Sbjct: 765 HYDAARDALAPVVARTPDDADTQLALARIDEDSGNRAAARERVQAVLARTPDDDVDTQLS 824

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
            ++RL  L   D    + +R Q    +  + D T         +      A     S S+
Sbjct: 825 AVRRLNALRRPDEAAQVTERLQA--AYPARADVTVAAGRVAEAQGRYDDAASLYRLSQSQ 882

Query: 775 IKQ 777
            + 
Sbjct: 883 ERA 885


>gi|71651809|ref|XP_814574.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70879559|gb|EAN92723.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1774

 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 63/721 (8%), Positives = 147/721 (20%), Gaps = 28/721 (3%)

Query: 167  EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226
            E       E+       A + +        E      A      + A     A       
Sbjct: 633  EAAKQKAAEEEAARRKAAEEEVARRKAAEEEAARRKAAEEEAARRKAAEEEAARWKAAEE 692

Query: 227  KGPIIIAGSTGSI---PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            +     A    +     A        A     A      +     A       +      
Sbjct: 693  EAARRKAAEEEAARRKAAEEEAARRKAAEEEAAKQKTAEEAARRKAAEEETARRKAAEEE 752

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
            +    +   + +  K  +    +R+  +            +     +            +
Sbjct: 753  AAKQKAAEEEAARRKAAEEEVARRKAAEEEAARRKAAEEEAARRKAAEEEAAKQKAAEEE 812

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
                K    +      A  EA   +      A       +  K+K+A   A +  A   +
Sbjct: 813  AARRKAAEEEAARRKAAEEEAARRKAAEEEAAKQKAAEEEAAKQKAAEEEAAKRKAAEEE 872

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT--LVKHPLAKFGFPE 461
                +     + +A    +    +    +   A  +       A     +   AK    E
Sbjct: 873  AAKQKAAE--EEAARRKAAEEEAARRKAAEEEAARRKAAEEEAAKRKAAEEEAAKQKAAE 930

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
            +  +      ELV            D         A     T +    +      ++ A 
Sbjct: 931  EEEASLSRERELVRSATAHCISGFADHFLSECIVSAAGTFRTELDRRVAEEEAARQKAAE 990

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
                           +K  +       +  +         +     +  +      +   
Sbjct: 991  EEAARQKAAEEEAARWKAAEEEAAKQKAAEEEAARRKAAEEEAARRKAAEEEAARRKAAE 1050

Query: 582  KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
            +  +   +   E      A               +    + E +          S     
Sbjct: 1051 EEAAKRKAAEEEAAKQKAAEEEAARRKAAEEEAAKQKAAEEEAARRKAAEEEEASLSRER 1110

Query: 642  DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI--- 698
            + +     +      +   + FLS  + S       E     A  +              
Sbjct: 1111 ELVR----SATAHCISGFADHFLSECIVSAAGTFRTELDRRVAEEEAARRKAAEEEASKQ 1166

Query: 699  ------YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
                    R               +        +     +K  +      +  +    + 
Sbjct: 1167 KAAEEEAARRKAAEEEAAKQKAAEEEAARRKAAEEEAARRKAAEEEAAKQKAAEEEASKQ 1226

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV----YARRILKLDFIPHFKKDPDRTDR 808
                 +      A+    S S  ++L+    A     +A   L    +          DR
Sbjct: 1227 KAAEEEAAKQKAAEEEEASLSRERELVRSATAHCISGFADHFLSECIVSAAGTFRTEPDR 1286

Query: 809  GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868
                     E  +++  +         ++        E               + +  F+
Sbjct: 1287 ----RVAEEEAARRKAAEEDAAKQKAAEEEAARRKAAEEEAARRKAAEEEAARRKAEEFI 1342

Query: 869  E 869
            E
Sbjct: 1343 E 1343


>gi|300798486|ref|NP_001179839.1| spectrin beta chain, brain 3 [Bos taurus]
 gi|297485639|ref|XP_002695037.1| PREDICTED: spectrin, beta, non-erythrocytic 4 [Bos taurus]
 gi|296477722|gb|DAA19837.1| spectrin, beta, non-erythrocytic 4 [Bos taurus]
          Length = 2564

 Score = 39.9 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 57/597 (9%), Positives = 138/597 (23%), Gaps = 71/597 (11%)

Query: 152  LADIIDIIETEEKKWED----LHALKNEKYGMWWLL-AADFLKIASKYWTERLVELNASS 206
            LA++ +       + E        L+  +    W       L+ A              +
Sbjct: 627  LAELQEQAARRRAELEASRSLWALLQELEEAESWARDKERLLEAAGGGGAAGATGAAGGA 686

Query: 207  PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
                  A + A+ + L     G   +                        + L GL    
Sbjct: 687  HDLSSTARLLAQHKILQGELGGRRALLQQALRRGEELAAAGGAVGPGAETVHLAGLAERA 746

Query: 267  PTAI--WNTITEKSTNITSSNTTYSTHPQYS------LAKLLDFLDIKREDVKRLGNVSN 318
             +A   W  + E +              Q+       L  L D   +           S+
Sbjct: 747  ASARRRWQRLEEAAARRERRLQEARALHQFGADLDGLLDWLRDAYRLAAAGDFGHDEASS 806

Query: 319  EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----DVALIEADNEREEAIS 373
                R        +      +         +              V ++EA+    E   
Sbjct: 807  RRLARQHRALTGEVEAHRGPVGGLRRQLATLGGASGAGPLVVALQVRVVEAEQLFAEVTE 866

Query: 374  IAIALRMSLDE--------------------------------NKKKSALITADRNLARR 401
            +A   R  L +                                +     ++        +
Sbjct: 867  VAALRRQWLRDALAVYRMFGEVHACELWIGEKEQWLLAMRVPNSLDDVEVVQHRFESLDQ 926

Query: 402  VKLELTRFGINIDIS------AGIPLSTT------LHSSILTSLLNAIFKLNDFMAIATL 449
                L    ++++ +       G P S          +S    ++  + +  + ++   L
Sbjct: 927  EMNSLMGRVLDVNHTVQELVEGGHPSSDEVRSCQDHLNSRWNRIVELVEQRKEEVSAVLL 986

Query: 450  VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
            V++ + +       +   + A+E     G    + +  L++ +      Q          
Sbjct: 987  VENHVLEVAEVRTQVREKRRAVESAPRAGGALQWRLSGLEAALQALEPRQAALLEEAALL 1046

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTN-----KNSTCGNLSISDWTKLTVTCLQNV 564
            +              + +      L +           +      + D        ++  
Sbjct: 1047 AVRFPAQAARLHQGAEELGAEWGALASAAQACGEAVAAAGRLQRFLHDLDAFLDWLVRAQ 1106

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                  + P     EE   L +  + + E     + +    +     L+ G+      E 
Sbjct: 1107 ETAGGGEGPLPRSLEEADALLARHAALKEEVDQREEDYARIVAASEALLAGDG----AEL 1162

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
               L +   L    L +  L+                    R ++    +   ++  
Sbjct: 1163 GPGLALDEWLPHLELGWHKLLGLWEARREALVQAHVYQLFLRDLRQARAVLRNQEMA 1219


>gi|317124024|ref|YP_004098136.1| DNA helicase [Intrasporangium calvum DSM 43043]
 gi|315588112|gb|ADU47409.1| DNA helicase [Intrasporangium calvum DSM 43043]
          Length = 1395

 Score = 39.9 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 50/612 (8%), Positives = 127/612 (20%), Gaps = 29/612 (4%)

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
           +  + M  R     +     + +   + D+    +        D+ +    + R   ++ 
Sbjct: 354 DAYDGMTNRRAAAQQFARTLEWAVREDRDVPGLDVSAPDAGGPDIPVSVLRDRRARLVAH 413

Query: 375 AIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
             A+    D       +     A+    +       R       S G      L   +  
Sbjct: 414 LRAMHAVRDPWGVSVHQVQEALAELATRQPSPTSRIRLNGPTLASLGRERIRDLAGRLRD 473

Query: 432 S--LLNAIFKLNDFMAIATLVK-----------HPLAKFGFPEKYLSRAKNALELVALRG 478
           +  L       +D    A ++               +     E          E      
Sbjct: 474 AAGLGAWSQDGDDPWFGARILTPDEAAKALDITTRYSTTELDEAAARLGAILGESHVPAA 533

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH-----------I 527
              +     L+++   R   +     V                   +            +
Sbjct: 534 GSLADWQSALETMAAVRHTLEVFRPEVFDVPLDEHIAATATRDWRAERGIDMGWLTRWKV 593

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            Q    L+          G L  +   +     L                 E    L + 
Sbjct: 594 RQQARRLLRPGRPPQDLHGELVSAREQRRQWFSLVGGGGRPTISPRLGEALEVHGRLLAD 653

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI--EKSSTLFILGTLESRLLNFDTLI 645
              + +      + A     +    +     +      +   + +L  + + L +     
Sbjct: 654 LHWLEQRLPAQGSPAEGQQPLTELSLADLRSRLAALAARPDRVSVLPHVTTVLDDLRAAG 713

Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
           LG L + +  +  +     + V          E  +   A+      G R +    +  +
Sbjct: 714 LGPLIDDLNARGVSPAAVPAEVDLVWWASLAQEISLRDPAYGAHDGEGLRRIADEYAAAD 773

Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
                     ++  +     +   +   +         +                     
Sbjct: 774 RAHLRATVPRVREAVARNIREVLADHPAQEALVRAEAGRARRHKPLRELMPAASAALTAI 833

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825
           +P       +      P   +   I          +      RG        E      N
Sbjct: 834 KPCWAMSPLVVASTLPPGRWFDVVIFDEASQVQPAQAISAVSRGRQVVVAGDERQLPPTN 893

Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
             T   +       +     E     +D++   L  +         ++   +     V  
Sbjct: 894 FFTVVSDDEGSSEPEEEVLTEGFESVLDVLAAALPTRKLTWHYRSRDERLIAFANAAVYA 953

Query: 886 PAKMAIESIGIH 897
                     + 
Sbjct: 954 GGLTTFPGTAVE 965


>gi|307544076|ref|YP_003896555.1| exodeoxyribonuclease V subunit beta [Halomonas elongata DSM 2581]
 gi|307216100|emb|CBV41370.1| exodeoxyribonuclease V, beta subunit [Halomonas elongata DSM 2581]
          Length = 1351

 Score = 39.9 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 51/468 (10%), Positives = 123/468 (26%), Gaps = 15/468 (3%)

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
              + L+          +  L R   ++ +S    +  T  ++ L   L A    +D  A+
Sbjct: 679  DLAVLVNNAGEARAIRRALLERGVRSVYLSDKEGVYETEAAAELELWLAACAAPDDDRAL 738

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGN----KNSYDIMDLKSLVLDRIATQKNN 502
               +  P       E       N  + +A        ++ +     + ++        + 
Sbjct: 739  RAALASPSLGLTLAELDAMSGGNQQDELAWEARVMQFRDYHRQWRQRGVLPMLHRLLADF 798

Query: 503  THVPHWQSRLSEEDK-ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
            +      +    E +    + L + + Q  + L             ++            
Sbjct: 799  SVPGRLLTVPEGERRLTDLLHLGELLQQASSELDGEHALLRHLREAIARPQEQGEAHRLR 858

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID----IITRLIDGET 617
                 D  + +     +     L  L        +      + W D    +   L   E 
Sbjct: 859  LESDADLVQVVTIHKSKGLEYPLVFLPFIAAARPTKKTDLPLRWHDDEGRLHLSLEADEA 918

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF-LSRVMQSDLNLKT 676
            ++ + +       +  L   L         GL      +++A      S        L+ 
Sbjct: 919  IRERADHERLSEDMRKLYVALTRARHATWLGLAPLEGLEHSAIGRLVASGQPLPPEALRP 978

Query: 677  AEKYIGQAAHDFE-MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
            A + +G AAHD          ++ + +   +  P            L          +  
Sbjct: 979  ALEALGDAAHDSTPSGTTGGTVVVSDAPEADTTPVPPD---NDEAPLAPARRPQRTIREH 1035

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                 ++     +            P   ++P T S    +++ ++P    A  + K   
Sbjct: 1036 WWIASYSALGYSSHSDSAMGSDDSAPASRSEPTTPSEESAREVHDEPRDSGAMPVNKEPA 1095

Query: 796  IPH-FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
                    P     GT  H ++    +   ++   +     + +    
Sbjct: 1096 SEGSLHAFPRGPSAGTFLHGLLEWAGQHGFSRVAEDAPLRDETLARRA 1143


>gi|239983606|ref|ZP_04706130.1| putative NRPS-type-I PKS fusion protein [Streptomyces albus J1074]
 gi|291455420|ref|ZP_06594810.1| amino acid adenylation domain-containing protein [Streptomyces albus
            J1074]
 gi|291358369|gb|EFE85271.1| amino acid adenylation domain-containing protein [Streptomyces albus
            J1074]
          Length = 3136

 Score = 39.9 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 66/649 (10%), Positives = 151/649 (23%), Gaps = 35/649 (5%)

Query: 52   PTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE 111
            P +R  +E+  E     G   +ILP                      L    + I+R L+
Sbjct: 445  PGRRTAREMAEETARPEGPGWSILP--------------LTARHPDALAEVAAGIRRELD 490

Query: 112  LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII------DIIETEEKK 165
                       L   +          L +  ++   LA+ L   +       +++    +
Sbjct: 491  GGNGARPTLADLGHTLAHRRQHLETRLSVVHSSRASLAEALDAHLRGEPHPRVVQGRRLE 550

Query: 166  WED--LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
             ED  L  +       WW +    L+     + E +   +         +L+   A    
Sbjct: 551  PEDRRLVWVFTGMGPQWWGMGRGLLES-EPVFREVVTACDREIRRLAGWSLLDEMAAGAE 609

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                    +A    +  A    ++ +                   A ++     S     
Sbjct: 610  TSRMAETWLA--QPANFAVQAGLAALWRSYGVTPDAVVGHSTGEIAAFHEAGVYSLEEAV 667

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                + +  Q++LA     L +   + +    V        + ++    P   +   + D
Sbjct: 668  GIAVHRSRLQHTLAGTGGMLAVSLSEEEAERRVRPY--ADRVCVAAVNSPTGVTLAGDRD 725

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
             L      ++        I A     +    +  +    DE     A +           
Sbjct: 726  TLVRLSGELRD-----EQIFAKLLTVQVPYHSPQMDRIKDELLASLAGLAPRPAQVPVHL 780

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              +      + + A              + ++ +      + +       LA        
Sbjct: 781  TGIEGPADGVVLDAAYWWRNVRDRVAFRAAVDRLADEGHRLFLEIGPHPALAHSLRECLE 840

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE-DKELAVL 522
             +           R            + + +       +   P  ++             
Sbjct: 841  ATGRTAVTVPSIRREEDEPERFAASLATLHNLGVDIDWDLLQPTGRAVPLPRYPWRRDRH 900

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
              +        L            +     W     T       D   +   ++      
Sbjct: 901  WTEPRNVAQVRLGHLDHPLLGRRTDHPGPAWQSALDTERLPYLADHRIQDSVVFPAAGYL 960

Query: 583  TLSSLFS-KIIETGSCIKANAIEWIDIITRLIDGETVK-PKIEKSSTLFILGTLESRLLN 640
             +++     +    S + A+      +        TV      +S+   I          
Sbjct: 961  EMATQAVLALTGGASAVLADVDLRKALFLAEDQATTVHLTVDPESADFAIASAPPGPGGE 1020

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
                  G +     P         +   +S   L  +  Y G AA  + 
Sbjct: 1021 RAVHATGTVRTAQHPAAGPPLDPAAVQARSGQWLTGSACYTGLAALGYH 1069


>gi|71899831|ref|ZP_00681981.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Xylella
           fastidiosa Ann-1]
 gi|71730422|gb|EAO32503.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Xylella
           fastidiosa Ann-1]
          Length = 1167

 Score = 39.9 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 48/559 (8%), Positives = 115/559 (20%), Gaps = 28/559 (5%)

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA-----ISIAIA 377
           R   +       +     +    E     +    +DV  + A   R E        ++  
Sbjct: 257 RLQQLLAEQREAEMRIETSRVRREESAEALATAQADVYQVGATLARIEQQIQHQREMSQR 316

Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
           L  + DE +K+   +T            L               +      +L       
Sbjct: 317 LHKARDEAQKQLIDLTRHMGDDAATLAVLREAVE----------NNEPQLHVLREQSEFK 366

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                    A             E   +     +E   +          + +  +L    
Sbjct: 367 QDALRDAEAALTDWQQRWDSHNRETSEASRAGEVERTRVDYLDRQTLDAERRRDLLLAER 426

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              +   +     ++  + +     L     Q      T    ++      +     +  
Sbjct: 427 AGLDLDALAEAFEQIEVQYETQKAALDGLNDQLEQRKQTLADVQHQQRTAQTELADVRKH 486

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               +               +E+G  ++ L +  + + + +             L     
Sbjct: 487 AQTARGRLSSLETLQQAALGQEQGAAMTWLQAHGLSSAARVGERIRVESGWENALESALG 546

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA-KNPFLSRVMQSDLNLKT 676
              +      L  L    + L      ++      +    T+        V    L    
Sbjct: 547 HMIEGVLVDDLQTLVEALNSLNEGHIALVADTQTQIQVAPTSLAAKVQGPVAIRRLLTHL 606

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                  AA   +   G    + TR+            WL+              ++  Q
Sbjct: 607 HGAEDLVAARALQATLGEGDWVMTRNGECLGEG-----WLRVSRSGAAEQGALLRERDIQ 661

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                   L     +              +       + ++       +  R + +L   
Sbjct: 662 TLRAQIETLQEREAELE------HRLTHFRDHLLMAEQHREDAQRQLYIAHRGVSELAGQ 715

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN-LPPHIDII 855
                      RG + H              + +     +  +D    +   L      +
Sbjct: 716 RQAHHGKLEASRGRIQHIEAEIAQLLETLDTSRDQARTARATLDEAVTRMGDLESQRQAL 775

Query: 856 WRHLFHKISHSFLEHEEKI 874
                          E   
Sbjct: 776 HAERQQLNLTRDQAREAAR 794


>gi|256389811|ref|YP_003111375.1| WGR domain-containing protein [Catenulispora acidiphila DSM 44928]
 gi|256356037|gb|ACU69534.1| WGR domain-containing protein [Catenulispora acidiphila DSM 44928]
          Length = 1086

 Score = 39.9 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 45/435 (10%), Positives = 106/435 (24%), Gaps = 19/435 (4%)

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
           D+S G PL   +  + L ++ +             +   P A   F +     +   +  
Sbjct: 77  DLSTGTPLQAAVAEAALVTVED-FGDDAAIGVWHHIRGVPFALEAFVDYCHLDSWPRV-- 133

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
               G      ++  +  +  R+               ++  ++  A  LV         
Sbjct: 134 ----GWLQQIPVLLDRMGMARRLLDLVRAAPDDVRADTMALAERLRAEDLVGCGFARTVA 189

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
              +    +    +L+ +   +L    L        +          G   +      IE
Sbjct: 190 TFLFPERSDWLEEDLAAAGSRELPAASLIPSVATPEQAAAVGEMMRAGAKWTWDGDPAIE 249

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
             + +     + +  +    DG+    K   ++   +L  +     +     L   + G 
Sbjct: 250 A-TFLTVAGDQALLFLLAWHDGQFTGTKRLTAARRRVLDLISRIPGDAAVRALAERDTGN 308

Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-----------IYTRS 702
                  +    R  +S L + +A +      H     N T              I +R 
Sbjct: 309 PETLAYLHAAAERFPESALRVLSAMEPTPATTHVLAALNRTEPAGAAATEIQIPAILSRP 368

Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
              +         +   L          L    + +L      + +              
Sbjct: 369 PWSDPKAKRPKPLVVEGLTAPSDVSAAWLPGERERWLGRGAGWEPSQGWAAIAEQIAVWR 428

Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
            +        + +        +    R L  D      +  D      +    +  L   
Sbjct: 429 TQPAKPDDPLTPVALYFAAYASPDLVRPLLADGWKPALRRADDRALAFVARYEVLALPAV 488

Query: 823 RINKNTPEINHLMKQ 837
           +  +  P     + Q
Sbjct: 489 QAIRGLPADRGRLLQ 503


>gi|162452827|ref|YP_001615194.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161163409|emb|CAN94714.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 1529

 Score = 39.9 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 52/524 (9%), Positives = 115/524 (21%), Gaps = 49/524 (9%)

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA---- 243
           LK +S  W    +             L +           GP+ +AG+ G +        
Sbjct: 370 LKRSSDRWETFTLRPGRHPISALVDVLAQVAESERAGAPAGPVELAGNGGLVATLRAQPG 429

Query: 244 ----RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
               RL +          VL  +D            E+     +     +      L  L
Sbjct: 430 YLGTRLRARCRRQGTRHHVLLFVDQFEELYTLGASREERAAFVACLEGAADDASSPLRVL 489

Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
           L              +  + +      ++              + L   +          
Sbjct: 490 LA----------IRSDFLDRVADDYEFMTHVTRGLSLLPPMGREGLREALTRP------- 532

Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS--A 417
             ++A   R E   +   +  +L+  +    L+          +    R           
Sbjct: 533 --LDAAGLRFETAEMVEHMLDTLESTRSPLPLLQFTAAKLWEARDRARRLLTRDSYEQLG 590

Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
           G+  + + H+  + S L    +      +A LV     +       L       E  A  
Sbjct: 591 GVAGALSAHADAVLSALPVREQRLARAVLARLVTPERTRAVVSLDELCELAQDGEDHAGE 650

Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                   +    L+L     ++  T           E        +    Q    L   
Sbjct: 651 AIAQVVQHLAGARLLLTEAGGEREGT-TVELVHESLIERWAKLRQWLAESEQDAQFLARL 709

Query: 538 KTNKNSTCGNLSISDWTKLTVTC---------------LQNVCLDEHRKLPNLWFEEEGK 582
           +        +                             +       R+   L       
Sbjct: 710 RAAAQQWEASGHAEGLLWRDRAAREARAWRERRRAEQGAEWRSGLGQREERYLLAVVALS 769

Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
             +    + I  G      AI  +     +      +   ++++        E+     +
Sbjct: 770 ERARRLRRQIAMGVIAMLTAIALMVSYLAISADRQARRAEQQAARA----DQETARAQAE 825

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
            L           +    +P  +  +  ++      +     A 
Sbjct: 826 ALQARNATRMAAARELQADPTTALSILREVEPPDVPRGWAVVAR 869


>gi|120603930|ref|YP_968330.1| hypothetical protein Dvul_2892 [Desulfovibrio vulgaris DP4]
 gi|120564159|gb|ABM29903.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4]
          Length = 1467

 Score = 39.9 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 54/737 (7%), Positives = 151/737 (20%), Gaps = 15/737 (2%)

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            LA  LA +      E  +  D      E+         D      +   E          
Sbjct: 356  LATRLAALGPDWTVERARALDRSLFARERIAGHEKALLDAASDEQRAADELARCQREHDS 415

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                +AL +   + +      P+    +        R    + + P     L        
Sbjct: 416  TAQDVALAQTALDAMPAAKVTPLSPEAAERLATRLDRAAGALGDLPQARHAL----SSAR 471

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
             A  + +        ++          +                ++   +          
Sbjct: 472  EATRDALKGLLPAAFTTPHHDGDAADATAMASGTTDGAVDRPDAQVTQGAALGAAPGATQ 531

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
              ++L     D+   D   +   +  +     A+    +       +  A R ++  +  
Sbjct: 532  LAAWLLNAREDLLTLDHAVSTSRDAAEAARREAVQTTTDLATARERLGEAQRRAIAAHDA 591

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
                +T +                +    A     T  ++  ++  + +    +      
Sbjct: 592  ----LTCEVFGNAPPHHGSAGATGDATGDALPGGLTHGNAHDVSGRMTSNVGNSAQDTSG 647

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
                   A        L+ A         R ++ + D+   ++ +         +     
Sbjct: 648  LRTSGQRASRLADITPLASAIETRAAALRRLSRVAADLRTERNTLDGIEERLAAHNAATP 707

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                 S     L   L    +  +  L+       +T   L++     +       + + 
Sbjct: 708  AGRGNST-LAGLGAALCVCGVGLLATLLPAVAALPATASLLALLGGITVASPLGTALAVA 766

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                    W  +     +               +           +    V  +    + 
Sbjct: 767  GLGVTAATWPRKAPGLAAHTAETTRLAARRDTLHTTCARLTDEVGVLTAQVGAEGADDAA 826

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
            L        R  +    +   L E     +      +          +    +    A  
Sbjct: 827  LERAAARIERWRDALATLRRHLEECETCSSETNRVAMRDDTARQHAEEATRHHAKACAAL 886

Query: 688  FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                      +  +++          R L                       +     D 
Sbjct: 887  EAALAAIAPGLQLQAVPPLMERAATLRALTDREADAARTVAALEAHVAALATEAATVPDL 946

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
             T                       + + Q      A  A    +L+     +   +   
Sbjct: 947  ATLSLPEGAALAEMVRSYLAAQRDAARLWQERRQAEAALATARQRLERCRAAQTAAE--- 1003

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKISHS 866
               +           +           +   +     ++ L    + I       ++   
Sbjct: 1004 --KVLREAAHRTASTQDAWRDLLAAQGLDASLTPATARDALSIAEECITLDDRGQRLLAD 1061

Query: 867  FLEHEEKIQSSIEKIFV 883
              + E +  + +  +  
Sbjct: 1062 IRQRETERDALVVPLAA 1078


>gi|146075814|ref|XP_001462780.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134066860|emb|CAM60001.1| hypothetical protein LINJ_03_0260 [Leishmania infantum JPCM5]
          Length = 2143

 Score = 39.9 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 73/820 (8%), Positives = 192/820 (23%), Gaps = 9/820 (1%)

Query: 57   IQELRSEFIEITGKKSTILPII-KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115
             +EL+   +  T +++ +   + +   D  E +              V+  Q+  EL   
Sbjct: 786  AEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQ 845

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
            +        +  + L   +          A   A+  A +  +    ++  E L A   E
Sbjct: 846  VARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEE 905

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA-LMRAEAEHLMKGTKGPIIIAG 234
                    A    ++ ++          A   +      L +       +  +    +A 
Sbjct: 906  LQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVAR 965

Query: 235  STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
                       ++  A      +V          A    +              +   Q 
Sbjct: 966  LAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQ 1025

Query: 295  SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
             L             V RL    +E   +    ++       +  +    LE ++  +  
Sbjct: 1026 RLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAA 1085

Query: 355  CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
               +     A N  E    +  A +   +   + + L         ++          + 
Sbjct: 1086 DRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLV 1145

Query: 415  ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
             +A          + L +  +   +     A     +   A     E     A+ A +  
Sbjct: 1146 TAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVARLAADRD 1205

Query: 475  ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
              R      +  +L+  ++     +          +   +E +E      + + Q +   
Sbjct: 1206 EAREQLA-ANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTA 1264

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
               +    +    L+                L +          E    ++ L +   E 
Sbjct: 1265 AQQRAELEAQVARLAADRDEAREQLAANAEELQQRLATAAQQRAELEAQVARLAADRDEA 1324

Query: 595  GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
               + ANA E    +                         E    N + L          
Sbjct: 1325 REQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLATAAQQ 1384

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
                          + +   + A             A     L    +            
Sbjct: 1385 RAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELE---AQVARLAADRDEA 1441

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
              Q+ +          +  + +   +  R    +  +      +    + +     S   
Sbjct: 1442 REQKAMDAEELQVLREVVTQERDASEHRRLALESEVERLRAERETMLKMLSMEAAESRHR 1501

Query: 775  IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
               + +    + A+  + L                   H  + +  ++  ++    +   
Sbjct: 1502 GGAVSHRDAELEAQIAVLLRERDEAGAQAVVAAEQLQLHREMVKKEEESFDEERCCLESQ 1561

Query: 835  MKQIIDSHFEKENLP---PHIDIIWRHLFHKISHSFLEHE 871
            + Q++++    E             +     ++   +  E
Sbjct: 1562 VAQLMEAFAAAEQQRQEVAAKAADAQERLDSMARRCIGLE 1601


>gi|309791296|ref|ZP_07685825.1| signal transduction protein [Oscillochloris trichoides DG6]
 gi|308226667|gb|EFO80366.1| signal transduction protein [Oscillochloris trichoides DG6]
          Length = 862

 Score = 39.9 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 56/585 (9%), Positives = 128/585 (21%), Gaps = 43/585 (7%)

Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
           G+           + +++                 +P + +  +         EREE   
Sbjct: 51  GDAHPTTPEMRAALLRAYRSEVAVRYMVWRQRYATLPMVAQTVAAPRSTGPLYEREELTF 110

Query: 374 IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
           +A+    + +  +  +   T  R    R         + +    G    TT    +   L
Sbjct: 111 VALRRSYAAEPTEHVAYTFTDLREALAR-----DDHLMLLGPPGGG--KTTALWRLALDL 163

Query: 434 LNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
             A    +D   +   V+           +   +  ++A    A R         +L +L
Sbjct: 164 AEAGSGGDDSARVPVFVRLGGIQPGHSLRDLISAELQSAALEDAHRRRFPLTAHRNLVNL 223

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
           +   +A  +              E    A  L                         +  
Sbjct: 224 LDTLLAEGRLVLFWDGLNEVPRSEFVLRAQAL--------------------ETFRRTHP 263

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                    +     D+H +L       +   +  +  + ++  +  +       D    
Sbjct: 264 GRLGSLTQSITTCRADDHAQLVAEAGGTDPYPVQPVVIQGLDQATIRQVVLGRLGDTKGS 323

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRL-LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
            +     +P     + L     L + L   +DT      N G   +   +  +     + 
Sbjct: 324 ALLDALHQPAHRTLADLARTPLLLTMLCTVYDTAGTLPRNRGQLLQAFVRERWAWEAARR 383

Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA---SRWLQRLLVLGGTDF 727
                  E      AH       +     + +             S     LL       
Sbjct: 384 PQGWIPPEVQEPALAHLAYTMTKSEGRGTSVARHFAERQIRPLVSSHDSAELLRQARDAD 443

Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
              L   G       + +         +R         Q        + + I        
Sbjct: 444 LIELLGAGAQVRFSHQLVQEYFAAVALQRELLATTKLNQGSWLHKRILARYIKPGERTGW 503

Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN-------HLMKQIID 840
              L L      +    +T   +     +             +           ++QI D
Sbjct: 504 EETLLLLAGIEEEGSIAQTLIRSFASRPLQAARLLEAEGANSDPLLRDEVCKEALRQITD 563

Query: 841 SHFEKENLPPHIDIIWR---HLFHKISHSFLEHEEKIQSSIEKIF 882
                +        +       F     ++     +   +     
Sbjct: 564 RAIAWQRRFDAGRALSLLGDPRFPVTLEAWQASIAQRGDTFTPTG 608


>gi|315503784|ref|YP_004082671.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315410403|gb|ADU08520.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 707

 Score = 39.9 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 78/293 (26%), Gaps = 22/293 (7%)

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
                I +     A   L  H   + G   +   R        A         ++   + 
Sbjct: 299 LANAVISQARGTEARLRLELHGQRRPGPEPE--LRIFTDEPAEANAVAARCRALVAGGTP 356

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
             +     + N     ++  LSE      +   +   +           + +T    + +
Sbjct: 357 AREIAVLFRTNAQSEAYEKALSEAGVPYVLQGAERFFERPEVRQAMIALRAATRSADAGT 416

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
                 V  L  V        P     E  + L++L     E  +  +      +   T 
Sbjct: 417 PLPAAVVEALTAVGWAPDAPPPGGAARERWEALAALVQLAEEYAAQAEEEP--GLTGFTE 474

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
            +     +  +     L +     ++ L +D + L GL EG  P   AK           
Sbjct: 475 ELARRAAQQHVPTVEGLTLASLHSAKGLEWDAVFLVGLAEGTLPTTYAK----------- 523

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRS--LRENNIPTIASRWLQRLLV 721
               T E+   +    +      R  L  + +            SR+L +L  
Sbjct: 524 ----TMEQVEEERRLLYVGITRAREWLWLSYATARSPGGRARRPSRFLPQLDR 572


>gi|294629557|ref|ZP_06708117.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292832890|gb|EFF91239.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 634

 Score = 39.9 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 40/399 (10%), Positives = 100/399 (25%), Gaps = 31/399 (7%)

Query: 24  ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83
            L+          DP   L    + +   ++ A +ELR        +   +    ++   
Sbjct: 40  TLVRRLDALCGHEDPEEALEATDILVLTFSRAAARELRERITRHGDRGRRV--RAQTFDA 97

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
                               S  +R+   A  +     +  D +   +      +     
Sbjct: 98  WAYGVLVQAYPDRD--WAATSFDERIRAAAEAVDEGALESGDSVPPSH-----VVIDEVQ 150

Query: 144 NAIWLAKNL-ADIIDIIE------TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
           + +   + L   ++D  +            + ++  + E           F +   + + 
Sbjct: 151 DLLGDRRELVEALLDRYQDSCGFTVVGDAAQSVYGFQIEDPAERNAETGRFFEWLRRSYP 210

Query: 197 ERLVELN--------------ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
           + LVEL               A S       +  A+    +      +++         T
Sbjct: 211 DDLVELRLTENFRAVTPEARIALSHGPRLQQVRDADEAATLYEELRDLLVDPMNSLGDLT 270

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
                      +    +   D      +   + E                 Y +A+LL  
Sbjct: 271 DEYTLQGLRDLDDTCAVLTRDNRQALVVSRLLHENGVEHRLRRPLEERPVPYWVAELLRR 330

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            +      +R  ++  ++         +         R+       +  +++  +D    
Sbjct: 331 TEATGLPEERFRSLLEQIPLPHEPNVGALWTVLRRATRSPGRTALDLDRLRRLVADGRFP 390

Query: 363 -EADNEREEAISIAIALRMSLDENKKKSALITADRNLAR 400
            EA +     I ++   R    E  +   L        R
Sbjct: 391 DEAADPETARIVVSTVHRAKGLEFDRVIVLTPPTVAELR 429


>gi|215410176|ref|ZP_03418984.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis
           94_M4241A]
 gi|298524120|ref|ZP_07011529.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis
           94_M4241A]
 gi|298493914|gb|EFI29208.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis
           94_M4241A]
          Length = 543

 Score = 39.9 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 56/532 (10%), Positives = 123/532 (23%), Gaps = 67/532 (12%)

Query: 22  IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI-EITGKKSTILPIIKS 80
           +  L+   L E           L  + +    + A +ELR     +I      +      
Sbjct: 31  LAGLVTRYLAETAA-------TLDEMLLITFNRAASRELRERVRGQIVEAVGALQGDAPP 83

Query: 81  LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
            G++VE                    Q+   L   +  +         +       SL +
Sbjct: 84  SGELVEHLLRGSDAERA---------QKRSRLRDALANFDAATIATTHEFCGSVLKSLGV 134

Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW-------------------- 180
           +  NA      L + +  + TE      L     ++                        
Sbjct: 135 AGDNAAD--VELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALALAVVDDPCAQ 192

Query: 181 -----------WLLAADFLKIASKYWTE---RLVELNASSPVGYQIALMRAE---AEHLM 223
                        +   F     +       RL     +  +      + A    A   M
Sbjct: 193 LRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPARDRM 252

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT---EKSTN 280
           +     +++     + P   R++    +  +  I++   D       +            
Sbjct: 253 RERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILI--GDPKQAIYGFRGGDIHTYLKAA 310

Query: 281 ITSSNTTYSTHPQYSLAKLLDFLD-IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            T+           S   L++ L  + R+      ++            +    P  +  
Sbjct: 311 GTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHRLASAPRPAPF 370

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITA 394
           R   +  + +         +  +      + A  +A  L        +       A+I  
Sbjct: 371 RLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASGATFAGRPVVAADIAVIVE 430

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
               AR  +  L   GI    +    +  +  +     LL A         +        
Sbjct: 431 HHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEAFDAPQRSGLVRAAACTMF 490

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
                        ++       R  +       +   VL  +       H  
Sbjct: 491 FGETAESLAAEGEEHHGGARCSRFARQVVRDEGVGRHVLQVVPASGGRDHRD 542


>gi|271969897|ref|YP_003344093.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513072|gb|ACZ91350.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 936

 Score = 39.9 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 64/753 (8%), Positives = 164/753 (21%), Gaps = 31/753 (4%)

Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
             W ++              +  I+   A+  A      I  +  E    +D   +    
Sbjct: 147 AQWLDEASARAVAFAARRLDAEGIAIVLAMRTAGEAFAGIRQMVVEGVGDDDAREILR-- 204

Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST 236
                       +               +     +       A         P+      
Sbjct: 205 ----LSAPGGLDRRVRDQLIAEARGNPLALRELPRSLSPAEIAGGFALIGSMPLESRIEQ 260

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296
             +     L  +       A   P  D  +   +W   T     +   +           
Sbjct: 261 SLVGQLEPLPESARLLLLLAAADPTGDPGL---LWRASTVLGLGLEDFDAARDADALVVG 317

Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
            ++     + R  V R  +  +     + +   + +  D              P+ +   
Sbjct: 318 TRVGFRHPLVRSAVYRSASPQDRRRVHAALADVTSVDHDPDRRAWHRASATLHPDEEVAA 377

Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
                      R  A +    L  + +   +            +R+             +
Sbjct: 378 GLERSAVRARTRGGAAAAGAFLERAAELTPEPV-------RRGQRLIAAAEAKHEAGAPA 430

Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
           A + L  T     LT+L  A+       A   L           +  L+ A+   EL  +
Sbjct: 431 AALRLLDTARDHPLTALQQALVARLHARAGYAL----RRDSSGAQLLLAAAQGLEELDPV 486

Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
                  + +            ++            + E+ + A  L+      +     
Sbjct: 487 LARDTYMEALSAAIYGGRLGDAEQVAAVSNAVLEATAGEESDRARDLILRGQALLAAKGQ 546

Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
               +       +     +   +   +      R   +LW     +TL+    ++  T  
Sbjct: 547 EAALETLRRAQRAF--LEQAPDSLELHWMWFASRAAQDLWDARGLRTLADRQVELARTEG 604

Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTL-FILGTLESRLLNFDTLILGGLNEGVWP 655
            +    I    ++        +         +  I       L  +    L         
Sbjct: 605 VVTVLPIALSLLMVAQTVDGELDAAEASCDEIDAIKDVTGHPLPQYGRFFLAAYRGQADE 664

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
                       +        +    G+A        G      T   RE       S  
Sbjct: 665 AERLAERIRPDALARGEGYGLSAVNFGEA--ILYNGLGRFAEAMTSGRRELPYTHELSHA 722

Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY----KRPKPFPPLEAQPRTYS 771
           ++ LL L         +   +   +    +                +       + +   
Sbjct: 723 MRTLLELVEAATHTGERVLAEEAFEKLAGVTRPVGTNWALAVLTMAEAQLRQGDEAQALY 782

Query: 772 FSEIKQLINDPYAVYAR--RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
              I++   +   +     R+L  + +    +  D  ++    + +++ +      +   
Sbjct: 783 RDAIERFERERIPIMVGRCRLLSGEELSRQGRHEDAREQLRAAYEVLSGIGLNGFAERAA 842

Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
                  + +               +      +
Sbjct: 843 RELSASGETLRVRAHGTAARLTDQELNVARLAR 875


>gi|322502967|emb|CBZ38051.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 3026

 Score = 39.9 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 62/595 (10%), Positives = 139/595 (23%), Gaps = 26/595 (4%)

Query: 59   ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118
             L +      G +        +   ++   F +       L   V  + R    A +   
Sbjct: 1181 RLVAALSRADGARGLRSAAFDATNSLLPNLFASIAGTQTALWRLVGALLRHGAGAGV--P 1238

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
                L  +    +  +P ++  S A+      +L   I +  +  ++          ++ 
Sbjct: 1239 SPEVLLALPIAHHIAAPHAIGDSEADV----SSLGVHIGVAASAAEELLSECEKAASEHR 1294

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238
             W      +LK     +T       AS             A+ L +     +  A S   
Sbjct: 1295 EWTQQLLQWLKDFPPAYTSDAAPEPASELRYDASTAHEVYAQLLEE-----LAAAESEHM 1349

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
                A             I +P L      A    +   +    +     S       A 
Sbjct: 1350 SRVGAVEALLWKTSCVRTISVPELSDGAGDADIAALAAAAAADIAEALRVSDAHVSVTAA 1409

Query: 299  LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358
             +D +         +   ++   G +       +           +    + +       
Sbjct: 1410 SVDPVQRAVHVSATI---AHHPRGLTRASVLGAIHACPFARLQEALKGTPVDSAATASDT 1466

Query: 359  VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418
                 A     ++     A+       + ++A + A     +RV   L R       SAG
Sbjct: 1467 GERSTAHPATADSPEGIDAVSQLARSLQHRAAKMAAVAEFEKRVLALLPRPQDIAMASAG 1526

Query: 419  IP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            +P +  T     + +L   +    D        K P          L+     L   AL 
Sbjct: 1527 MPTIDATPACKAVQALAAMLADELDIQIPEANFKRPSTASAALLDSLASYLEQLHDAALP 1586

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
               +        SL   R A    +       +  + E       ++D            
Sbjct: 1587 TLHHRRIESGYASLEKLRAAVDALHDAALEKVADAALEQISPLHNIIDM----------P 1636

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                        I    +   +        +             + L             
Sbjct: 1637 WPEALKAADLRHIHLIIEHLASGADRAASPDSTDDQFNNLRVIAQALGVPPDAYAGERDG 1696

Query: 598  IKANAI-EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
                   +  +    ++     +    ++    +    ++    +   +    +E
Sbjct: 1697 ECVPTTGQLAERAGAVVSARAEETAGLRAIAQALGVPPDAYAGEWTEEMTPRCSE 1751


>gi|46578486|ref|YP_009294.1| hypothetical protein DVU0069 [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|46447897|gb|AAS94553.1| hypothetical protein DVU_0069 [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|311232414|gb|ADP85268.1| hypothetical protein Deval_0097 [Desulfovibrio vulgaris RCH1]
          Length = 1467

 Score = 39.9 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 54/737 (7%), Positives = 148/737 (20%), Gaps = 15/737 (2%)

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            LA  LA +      E  +  D      E+         D      +   E          
Sbjct: 356  LATRLAALGPDWTVERARALDRSLFARERIAGHEKALLDAASDEQRAADELARCQREHDS 415

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                +AL +   + +      P+    +        R    + + P     L        
Sbjct: 416  TAQDVALAQTALDAMPAAKVTPLSPEAAERLATRLDRAAGALGDLPQARHAL----SSAR 471

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
             A  + +        ++          +                +    +          
Sbjct: 472  EATRDALKGLLPAAFTTPHHDGDAADATAMASGTTDGAADRPDAQETQGAALGAAPGATQ 531

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
              + L     D+   D   +   +  +     A+    +       +  A R ++  +  
Sbjct: 532  LAARLLTAREDLLALDHAVSTSRDAAEAARREAVQTTTDLATARERLGEAQRRAIAAHDA 591

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
                +T +                +    A     T  ++  +   + +    +      
Sbjct: 592  ----LTCEVFGNAPPHHGSADATGDATGDALPGGLTHGNAHDVPGRMTSNVGNSAQDTSG 647

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
                   A        L+ A         R ++ + D+   ++ +         +     
Sbjct: 648  LRTSGQRASRLADITPLASAIETRAAALRRLSRVAADLRTERNTLDGIEERLAAHNAATP 707

Query: 508  WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
                 S     L   L    +  +  L+       +T   L++     +       + + 
Sbjct: 708  AGRGNST-LAGLGAALCVCGVGLLATLLPAVAALPATASLLALLGGITVASPLGTALAVA 766

Query: 568  EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                    W  +     +               +           +    V  +    + 
Sbjct: 767  GLGFTAATWPRKAPGLAAHTAETTRLAARRDTLHTTCARLTDEVGVLTAQVGAEGADDAA 826

Query: 628  LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687
            L        R  +    +   L E     +      +          +    +    A  
Sbjct: 827  LERAAARIERWRDALATLRRHLEECETCSSETNRVAMRDDTARQHAEEATRHHAKACAAL 886

Query: 688  FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                      +  +++          R L                       +     D 
Sbjct: 887  EAALAAIAPGLQLQAVPPLMERAATLRALTDREADAARTVAALEAHVAALATEAATVPDL 946

Query: 748  TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
             T                       + + Q      A  A    +L+     +   +   
Sbjct: 947  ATLSLPEGAALAEMVRSYLAAQRDAARLWQERRQAEAALATARQRLERCRAAQTAAE--- 1003

Query: 808  RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKISHS 866
               +           +           +   +     ++ L    + I       ++   
Sbjct: 1004 --KVLREAAHRTASTQDAWRDLLAAQGLDASLTPATARDALSIAEECITLDDRGQRLLAD 1061

Query: 867  FLEHEEKIQSSIEKIFV 883
              + E +  + +  +  
Sbjct: 1062 IRQRETERDALVVPLAA 1078


>gi|255077347|ref|XP_002502316.1| predicted protein [Micromonas sp. RCC299]
 gi|226517581|gb|ACO63574.1| predicted protein [Micromonas sp. RCC299]
          Length = 1166

 Score = 39.9 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 42/432 (9%), Positives = 87/432 (20%), Gaps = 18/432 (4%)

Query: 436  AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
            A+ +L     +  L   PL K    +        A +       + +  +  L   +   
Sbjct: 751  ALCELQAMHGLLALAGSPLPKSTSAKLLRVVGHLARDDNCKDAMQRAGAVPKLVRFLQWE 810

Query: 496  IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
                +       +     +        +       I                L ++D   
Sbjct: 811  DPATREEALRALYNLCRGDASALEQAAVAGVTPHLIAV------AAPDVFNKLGLADELG 864

Query: 556  LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                                   E    L++ F   + + S      +   D +   +  
Sbjct: 865  AATGTNGGGTHWTRGGPGAEAQIERLAPLAAPFLCDMASSSRRTRGELARHDALDAYLSI 924

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
               KP       L +           D        E    +  A   + S +    +   
Sbjct: 925  ARNKPSASSPPGLQLAAVRAVAGWMRDEPWKV---EARLAEPDAIAAWASAIDPRRIPPI 981

Query: 676  TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
              E        D              +L            L                  G
Sbjct: 982  DPEV------LDTLREIARESPRLCAALASGGAMAPLVEALGAPSSATAAVSSRATHNAG 1035

Query: 736  QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795
                +    L  +  +    RP               S       DP    A   L    
Sbjct: 1036 TVDWNNGAVLRRSNSRRLELRPGRAGAGSRTDD---PSRPHDARKDPRRTLAYVRLLAQL 1092

Query: 796  IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855
              H +   D + RG      +  L+    ++ +  +     +  +   ++          
Sbjct: 1093 ADHRRDAVDESGRGHDLVGRLRALVADYESEASRRVEARALRAAEGVDDESADSERAAED 1152

Query: 856  WRHLFHKISHSF 867
             R    ++    
Sbjct: 1153 VRTEAERLLAEL 1164


>gi|330819356|ref|YP_004348218.1| putative polyketide synthase PksJ [Burkholderia gladioli BSR3]
 gi|327371351|gb|AEA62706.1| putative polyketide synthase PksJ [Burkholderia gladioli BSR3]
          Length = 4920

 Score = 39.9 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 41/463 (8%), Positives = 81/463 (17%), Gaps = 12/463 (2%)

Query: 302  FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361
             +  +      +        GR        + PD +   +      +             
Sbjct: 2033 EMRRRPGREAWVHVRLAGGDGRVARYDIDLIDPDGTVCVSMREFSARAEAADGASEPNRY 2092

Query: 362  IEA----DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
              A       R+E  + A A+       ++ +  +       R              +  
Sbjct: 2093 RAAVWQPGEPRDEREADAGAMVAGRHRGERDAPRVAVLEAAPRLSDELRRLGIDASWLPE 2152

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G           L     A         +  L     A              A       
Sbjct: 2153 GDDARHRPALRDLARDQAATQAEGRPRDLLVLADARQAPADDTLADWLGHDAAA-----T 2207

Query: 478  GNKNSYDIMDLKSLVLDRIATQK-NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
            G +    +  L     +R+A       H    + R   +        +D  +        
Sbjct: 2208 GRRALVLVAGLAEASAERVAALVERERHGHAAEVRHEADGTRRVRGWIDAAVPRWLLETD 2267

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                        +           L  V             E                  
Sbjct: 2268 ALRPGGCYWIAGANGALGASLACHLLTVERVTVVLSDAQPPEPAIVEAIERHRGEGARLV 2327

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT--LESRLLNFDTLILGGLNEGVW 654
            C+  +A      +   I     +            G    ++             +   +
Sbjct: 2328 CLTGDAGRDAADLAARIRDRHGRIDGVLHCAHDPAGASSRDTLAALAAIDAATRADALDF 2387

Query: 655  PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
                A     S       +    E  +G  A   +                +        
Sbjct: 2388 LAACAAPIGASVGETRVDDDACGEHRVGLVARFVDARQARVQAGIGFGRTVSVTAGAPLP 2447

Query: 715  WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
            W  R  +L                L      +       + RP
Sbjct: 2448 WPGRTPLLRAGGIASQPALAVVQALYHALGSEQVALAVDWHRP 2490


>gi|116054465|ref|YP_790466.1| hypothetical protein PA14_28895 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115589686|gb|ABJ15701.1| hypothetical protein PA14_28895 [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 2098

 Score = 39.9 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 51/509 (10%), Positives = 115/509 (22%), Gaps = 31/509 (6%)

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
            R+  +   ++  ++         V   +      +   AG           L + + A+ 
Sbjct: 1012 RLVAEGLGQRIVMLNDVNRDREPVIRNIREQLEALFADAGGAQGWERQRERLAARIEALE 1071

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
               D         H           LS  +   EL+ L       D   L+  +      
Sbjct: 1072 GELDRY-------HQSLHRVDEATGLSYRRLLGELIELEKGSPPLDFPALRQRLAALDIG 1124

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                           EE+    V L        +PL   +          + +D  +   
Sbjct: 1125 SLARL----------EENCAPLVRLWLPARYEGSPLAQLRAFATDQATLQAFADSLRAFG 1174

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                           +    ++     +  +  + T   ++    + +     L    T 
Sbjct: 1175 EAENARQKALDEHPASFE-VDDPTPYRAWLASQVGTLLNLREEQRQRLAHWLPLFRDATP 1233

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                     L     +E +L   D      L           N          L    A 
Sbjct: 1234 GQPSRGDGLLAEAEQIERQLRQLDLERHAPLLSPALAMLEENN----------LERFQAH 1283

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                  A  +        L+    LR        +    RL  L G    +   +  +  
Sbjct: 1284 ARQVLEARTWLARLNPLRLLRRGRLRRFLREHGEADDDSRLAALLGACDLERQWRPLRRQ 1343

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
            L   ++            P+         +     EI+ L            L    +  
Sbjct: 1344 LAALQQSLGLATVATDAGPELTGLAGHASQQL--REIQTLARGLAQAPRAEQLDAVILTG 1401

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
             K+  +    G L   +I +  ++        +   +   +     +       ++    
Sbjct: 1402 EKQRFEAL-LGDLDAALIRQAARQLSLDKLKVLADWLGDELLEQLHRAIAGNQSNLPALG 1460

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
               +     + ++     + +     +  
Sbjct: 1461 RLREALPQLVAYQRFRGRAGQLEAAELEF 1489



 Score = 38.7 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 55/614 (8%), Positives = 137/614 (22%), Gaps = 26/614 (4%)

Query: 99   LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
                   +++ L    +  + R +                    A     A + A +   
Sbjct: 1107 PPLDFPALRQRLAALDIGSLARLEENCAPLVRLWLPARYEGSPLAQLRAFATDQATLQAF 1166

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
             ++     E     + +                 + W    V    +     +  L    
Sbjct: 1167 ADSLRAFGEA-ENARQKALDEHPASFEVDDPTPYRAWLASQVGTLLNLREEQRQRLAHWL 1225

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                      P    G         R +  +    +  ++ P L   +         +  
Sbjct: 1226 PLFRDATPGQPSRGDGLLAEAEQIERQLRQLDLERHAPLLSPAL--AMLEENNLERFQAH 1283

Query: 279  TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                    T+              L     +     + S           +    P    
Sbjct: 1284 ARQVLEARTWLARLNPLRLLRRGRLRRFLREHGEADDDSRLAALLGACDLERQWRPLRRQ 1343

Query: 339  MRNTDILENKIPNIQKCFSDVALIE--ADNEREEAISIAIALRMSLDENKKKSALITADR 396
            +                  ++  +   A  +  E  ++A  L  +    +  + ++T   
Sbjct: 1344 LAALQQSLGLATVATDAGPELTGLAGHASQQLREIQTLARGLAQAPRAEQLDAVILT--- 1400

Query: 397  NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
               +R +  L      +   A   LS      +   L + + +             P   
Sbjct: 1401 GEKQRFEALLGDLDAALIRQAARQLSLDKLKVLADWLGDELLEQLHRAIAGNQSNLPALG 1460

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                      A         RG     +  +L+ L L R   ++ +              
Sbjct: 1461 RLREALPQLVAYQR-----FRGRAGQLEAAELEFLALLRQRQERLDAIPAEALEATVRRM 1515

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW---TKLTVTCLQNVCLDEHRKLP 573
                  L               +   +     S+++     +     L    +D  R   
Sbjct: 1516 LNREARLGWKQRLEQDNPELLFSQDEARARVASLAEADVQMRALNRELLGKGIDAARLGS 1575

Query: 574  NLWFEEEGKTL---SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
               +E+  +     S    + IE G+ +   ++  + ++   +    +  K      +  
Sbjct: 1576 RKQWEDVTRLTGKRSRRLREFIELGAELGLMSLRPVWLMNPDLASRVLPLKAGLFDMVIY 1635

Query: 631  LGTLESR-------LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                +         L      ++ G  + + P     +   S   +        E    +
Sbjct: 1636 DEASQMPVEFALPTLYRGRVTVVSGDEKQMPPTAFFSSRVESDEAELFDGEAPDEDADEE 1695

Query: 684  AAHDFEMANGTRHL 697
                +E     R +
Sbjct: 1696 QREAYEDTWNRREI 1709


>gi|296140735|ref|YP_003647978.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
 gi|296028869|gb|ADG79639.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
          Length = 697

 Score = 39.5 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 51/558 (9%), Positives = 133/558 (23%), Gaps = 67/558 (12%)

Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPAN--AIWLAKNLADIIDIIETE---EKKW 166
           + +L   W   + D   +L       +  +  +         + D++  I+         
Sbjct: 93  MRQLRYFWPRAVGDTRWELLDNKFPIVGRAARDCELRPETDTVRDLLAEIDWAKASLVTP 152

Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN---ASSPVGYQIALMRAEAEHL- 222
           E       +      +     +      +  R  + +           +       ++  
Sbjct: 153 ETYAQAVEQAGRTAPMAPGT-VADVYAAYERRKTDQDGNRLLDFDDLILVTAAILEDNAV 211

Query: 223 ----MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +      ++       P   +L++      +   V+   D +     +   T   
Sbjct: 212 VADEFRDRYRSFVVDEYQDVTPLQQQLLNAWLGDRDDLTVV--GDANQTIYSFTGATPNY 269

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
               +            + +L                          V+S +      + 
Sbjct: 270 LLDFTRRFED-----AVIVRLQRDYRSTP-----------------QVVSLANKVIGAAQ 307

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSALITADR 396
            R        I       S +   EAD+E  EA  +A  +R   +      + A++    
Sbjct: 308 GRVAGTRLELIGQRPDGPSPI-YAEADDEPAEAKLVAKRIRELMASGVPASEIAILYRIN 366

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHS--SILTSLLNA-IFKLNDFMAIATLVKH- 452
             +   +  LT  GI   +  G           ++   +  A  F       + ++V+  
Sbjct: 367 AQSAVHEAALTEAGIPYQVRGGSAFFERPEIGQAVRELMSRAGQFGGISGDELMSMVEGA 426

Query: 453 --PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
             PL +   P       +                   L +LV       K    +   + 
Sbjct: 427 LEPLGRTTEPPDGARALER---------------WQALNALVELTADLAKQRPGLTLAEL 471

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
                 +  A          ++ L   K  +      + +++ +      +     +   
Sbjct: 472 IGELRARAEAKHPPTMEGMTLSSLHAAKGLEWDAVFLVGLTEGSVPIAQAIAKGDPEPIE 531

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
           +   L +    +    L        +       +    +  +               +  
Sbjct: 532 EERRLLYVGVTRAREHLHLSWALARNEGGRKTRKRTRFLDVVSAQA-----DAGRPRVAD 586

Query: 631 LGTLESRLLNFDTLILGG 648
            G  + +  + D   + G
Sbjct: 587 SGPSKGKRRSSDICRVCG 604


>gi|158316142|ref|YP_001508650.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
 gi|158111547|gb|ABW13744.1| serine/threonine protein kinase [Frankia sp. EAN1pec]
          Length = 1636

 Score = 39.5 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 74/848 (8%), Positives = 188/848 (22%), Gaps = 61/848 (7%)

Query: 59   ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118
            E+R   +   G  + +   +       E      +  +           + + +  L  +
Sbjct: 384  EVRERLLRALGPNAGLAAAVVP-----ELAALLRVPPALGDPITAQVRAQRVAVETLRAV 438

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
               K   +      +     P+   + I   +         + E         L    Y 
Sbjct: 439  ASRKRTVVFFVDDLQWAGRTPLGFLDLILGGEE--------QIEGL-------LLVGAYR 483

Query: 179  MWWLLAADFLKIASKYWTERLV-----ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
               + A   L      W  +        L    PV     +         +G +   +IA
Sbjct: 484  EREVDATHPLAPMLARWRRQPAGPQHLRLGNLPPVDQTAMVADLLRLSPERGAELARLIA 543

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
             ST   P     +     H     +           +   +                 P 
Sbjct: 544  PSTAGNPYDTVELLNSLRHDGVLALGDDGWRWEQATLRRRLDCVDVTGLLRARMAVLSPA 603

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
                  +      R ++  L   +                     + +      +  + +
Sbjct: 604  AREMLAMMACLAGRVELDLLEAATGLAADEIERRLAPAFTDGLLVLESDGRQSMRFRHDK 663

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA-LITADRNLARRVKLELTRFGIN 412
               S ++ +    ER   + +A  L    +     +A  +     +    +  L      
Sbjct: 664  AQESVLSGLTPQAERAMRLCLARRLADRPELFAVAAAQYLLVVDAVHAPEERRLMAGLFR 723

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
                    LS         +    +    D   +  +             Y+       +
Sbjct: 724  RSADEAKLLSNHPLVERFLTAALRLVDPADTDQLIDVHTS-----RHAALYMLGRLEETD 778

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI---LQ 529
                   +   D     +  L ++++  N            ++ ++L + + D      +
Sbjct: 779  EEYQTIGRLCTDPAQRTAATLVQVSSLTNQGRAAEAMRLGLDQLRQLGLAVPDRDHLDAE 838

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                L       + T  +  +        + L    +      P  + +++     ++ +
Sbjct: 839  IDRRLDALYQWIDQTSESDDLRRPRITDRSQLDTARIINRLMPPAYFSDQKMLAWLTVTT 898

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
              I          +     IT +        +        IL   ++R    D   +  L
Sbjct: 899  LEIWARHGPDPTLLGPAGHITFVTVVRRRDYRTGWRVMRRILAVCQARGYEPDMWQVWFL 958

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
                               +  L            + D   A   R+++ +  L    + 
Sbjct: 959  YAAGTGHWFDPLEDNLSATRRALEGL-------IQSGDLLNACWARYVLMSTILDCAPLL 1011

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
                  +   L         N ++  + Y    R L                        
Sbjct: 1012 DTFVAEIDEALAFTRRTSNGNAEETFRAYGQLARVLRGEVVTSAAGEAA----------- 1060

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
                ++ +L  +P+A     I +        +  +      + H      +   I    P
Sbjct: 1061 ----QLGRLAANPFAAAHLHITRALAAAILDQPAE-----LVRHTAAAMPLLPSIQALYP 1111

Query: 830  EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
                 + + +    +                 +              +   +   + A+ 
Sbjct: 1112 MAVAYLLRAMALAGQARTAEAGQRGAVLAELDEAIEWLTSRAADAPVNFLHLLRLVEAER 1171

Query: 890  AIESIGIH 897
            A  +    
Sbjct: 1172 AWTTGDFR 1179


>gi|312602470|ref|YP_004022315.1| exodeoxyribonuclease V subunit beta [Burkholderia rhizoxinica HKI
            454]
 gi|312169784|emb|CBW76796.1| Exodeoxyribonuclease V beta chain (EC 3.1.11.5) [Burkholderia
            rhizoxinica HKI 454]
          Length = 1245

 Score = 39.5 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 106/945 (11%), Positives = 240/945 (25%), Gaps = 62/945 (6%)

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                D   +            L     L+  W    P  + +    + +         + 
Sbjct: 310  HPFFDCADALVAALREEQAMHLRRWFALVREWLRVGPSSVAERKRTARIMSFDDLLANLH 369

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
             A ++   +     E      +   ++     +    A F +I +      LV     + 
Sbjct: 370  HALHVHPWLADALRERYPAALIDEFQDTDPLQF----AIFNQIFAPKGPLFLVGDPKQAI 425

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
              ++ A +    +     +    +   +  S PA     + +      A VL GLD H  
Sbjct: 426  YSFRAADLHTYLDARAHASARYTLAV-NQRSDPALIAACNRLFGANPRAFVLDGLDYHPV 484

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
             A   +             +  +     +  L D   + + D +R    +       ++ 
Sbjct: 485  RAAMRSRPAFVDRHDPLGASDGSGAALRVWWLPDHAPLSKRDAERAAAEACAAEIARLMR 544

Query: 328  SK-SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
               +      ++      +   +   ++      ++         ++ A        E  
Sbjct: 545  DARAGDATIGTEPLAPANIAVLVQAHRQGMLMKRVLRGWGIGSVELAQASVFASIDAEQF 604

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
            ++  L        RR++  L    I +D +A   +     ++        +    D  + 
Sbjct: 605  ERLLLAIDTPGDLRRLRAALATDWIGLDAAALWAIEQGEPAAAAAGRCEPVPSELDSASW 664

Query: 447  A------TLVKHPLAKFGFPEKYLSRAK-NALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                    L+ H           +   +       A  G +   D+  L  L+  R +  
Sbjct: 665  VERFAGYRLLWHERGFAPMWRIVMRELRIAQRLASADDGERRLTDVNHLAELIQARDSEH 724

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                    W S    +            L+    LV   T   S      +     LT  
Sbjct: 725  PGIAPTLCWLSAQRADPD--VGDETQLRLESDRDLVQIVTIHKSKGLEYPVVFCPFLTNG 782

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI--DGET 617
             L+         +   +  E+G  +        E     +    E      RLI      
Sbjct: 783  ALRAGPSCAALPVAREYHREDGLAVLHFGCDGDEAQRIDRGVRREQAAERARLIYVALTR 842

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
               +    + ++  G   S      +++   +  G    +   +        +       
Sbjct: 843  AVYRCYLVAGIYTSGAHASTKEARQSVLNWLVAGGSTHFDAWLDGPPETAALAACWRALP 902

Query: 678  EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
                G              L    +   +    + +R L     +       + ++R   
Sbjct: 903  GDDEGVVVVPLPTVARRDPLPPPDASHVDVHARVPARRLFDAWRIASFSSLASTRQRPLP 962

Query: 738  YLD--WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS-EIKQLINDPYAVYARRILKLD 794
             +D     + D+               LE  P   S       ++  P    A   L   
Sbjct: 963  DIDDVLHARPDHDDDVAQADTQAIKADLEPMPTNASPGLRDDDILRFPRGPAAGDCLH-- 1020

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH----------FE 844
             +       D +   T     +TE        +T +++ +M +++               
Sbjct: 1021 RLMELADLRDPSSWPTAIVRALTEQPVSSRELSTEQLSAMMTRLLRDLAHTPLEADFMLG 1080

Query: 845  KENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTG 900
            + +    +  +     +       F    E+   +           MA++   +H  L G
Sbjct: 1081 ELDPSRRLTELEFVFPVASLDMRRFATMLEEHGIAG----------MALDDGVLHGYLKG 1130

Query: 901  FADRIDLLKSGFVDITDYKT---GDNP--------KKETAQKLIDPQLSLEAAALKAGSF 949
            F D +   + G   I D+K+   G++P                   Q  +   AL     
Sbjct: 1131 FIDAVIEFR-GRFWIIDWKSNYLGNSPHAYRAAELSAAMDAHAYRLQALIYTIALHRYLR 1189

Query: 950  SQID----CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990
            +++             Y+ L+           ++        +  
Sbjct: 1190 ARLPDYDYDTHFGASLYLFLRGVRPDWPGAGIERFRPTRAAVDAF 1234


>gi|288541462|gb|ADC45534.1| modular polyketide synthase [Streptomyces nanchangensis]
          Length = 5987

 Score = 39.5 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 66/647 (10%), Positives = 148/647 (22%), Gaps = 39/647 (6%)

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
              +  A  +T+                     L  +   + + R   + L    +   G 
Sbjct: 5205 PALLDAALHTLGLDPALSEEPADASEGQRAARLPFVWRGVTLHRRGGEVLRVRLSPGPGN 5264

Query: 324  SMVISKSFLPPDTS-DMRNTDILENKIPNIQKCFSDVALIEA------------------ 364
             +V  ++              +L        +  +     E+                  
Sbjct: 5265 GVVAIEATDESGRPVASVEALVLRPVSAGEVRAAAHSEHHESLFGLEWPTATLPTADHSP 5324

Query: 365  DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
             +    A+  A    +    +   +AL+ A         + +   G      AG     T
Sbjct: 5325 SDPSSFAVVGADPSGLPYRRHDDWAALLDAVEADGAPELIVVPCGGDEDGDVAGGAAVRT 5384

Query: 425  LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK---------YLSRAKNALELVA 475
               ++L  L + +       +   ++          +          +        E   
Sbjct: 5385 AVRNVLHLLQSWLGDDLFADSRLVVLTRGAVATRREDDVTDLPGAAVWGLVRSAQSENPG 5444

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
                 +      L  ++   +A  +    V   +  +    +                  
Sbjct: 5445 RITLVDWDGHGSLAQVLPAALAGGEPQLAVRDGEVCVPRLVRMPRQDRPAPTDGAADGSA 5504

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
               T+ ++     ++     + +T    V      +            L        E  
Sbjct: 5505 DGPTDASAGASPWALDPAGTVLITGGTGVLGGLIARHLVAAHGVRQLLLVGRRGAQAEGV 5564

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
              + A        +T        +  +       +    E   L       G L++G  P
Sbjct: 5565 RALAAELEAVGATVTVAACDAADREALATL----LGRVPEQHPLTAVVHASGVLDDGTIP 5620

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
              T +        +    L   E         F M +    ++ +               
Sbjct: 5621 SLTPERIDTVFRAKVVPALLLHELTRDADLAAFVMFSSAASVLGSPGQGNYAAANAVLDA 5680

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            L R     G                 TR LD      H +  +      A     +  + 
Sbjct: 5681 LARHRRAQGRPATSLAWGLWAQGSGMTRHLD---GTDHARISRGGMAPLATEEALALFDA 5737

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL- 834
                 +P+ V AR  L                RG L              ++  +   + 
Sbjct: 5738 SSAAGEPFLVPARFELGSLRSRATGAGVPALLRG-LVPASARRGGAADRGEDGEDRTDVG 5796

Query: 835  --MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879
              +++ +     KE       ++  H    I H+ +E   + ++  E
Sbjct: 5797 VSLRERLARCGGKEQQGILTRLVRSHAAAVIGHAGIEEVAERRAFRE 5843


>gi|262194504|ref|YP_003265713.1| serine/threonine protein kinase with TPR repeats [Haliangium
            ochraceum DSM 14365]
 gi|262077851|gb|ACY13820.1| serine/threonine protein kinase with TPR repeats [Haliangium
            ochraceum DSM 14365]
          Length = 1024

 Score = 39.5 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 64/725 (8%), Positives = 154/725 (21%), Gaps = 61/725 (8%)

Query: 166  WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA------ 219
               L         +   +           + +    L+A  P   +   +          
Sbjct: 341  PSALVRAARVPASVHAAILRGLAAAPDDRYPDMESLLDALDPTPRRRRYLALLVLVAVFF 400

Query: 220  -----EHLMKGTKGPIIIAGSTGS-----IPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
                             +AG   +     +              +G  +      H+   
Sbjct: 401  SGSLYALASAPETTCAEVAGVMDTHWNSGVRRDVERAVLATGVADGDRIWHSAAAHLDGY 460

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
              +   E       +  T    P   LA+    LD  R  +  L +   ++   +     
Sbjct: 461  ASDWKREHVQVCEHARATPGLPPSPVLAQRAACLDAGRRALSALVDALADVDAEAARNIV 520

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA-DNEREEAISIAIALRMSLDENKKK 388
                        +D               V ++ A  +   E  ++    R        +
Sbjct: 521  LAAESLPQPSACSDASIPLDGLPLPPLDQVDVVAAIQDRLAEVAALTSLGREQGAIALAR 580

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
            S L+ A+      V+ E          S          +++L    +          +A 
Sbjct: 581  SQLVAAENTGYEPVRAEALFHLGRALASRASGGDLAEATTLLLEASDIAEGGRYDALVAE 640

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
                                +    + LR    +   +     +L R+  ++   H    
Sbjct: 641  ------VWNELALAAYHHEDDESLRLRLRRAAAATHRIGDPPALLARVLRRRGLLHFRAD 694

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
            +   +E D E A+ ++    +    L       N+     S +         L ++    
Sbjct: 695  RPAEAERDLERALEVLPGHARVTRAL-YLHDLGNAQRAQRSFTAAATSYHIALDHLEAAL 753

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                  +        +    S   E    +  +  E  D             ++   + +
Sbjct: 754  GTHHALVGALRFDLAMLRRQSGERERAQGLLISLTEGAD------AASVAAKRLAGQAHV 807

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
             +           D+         ++ +           +          + + + A   
Sbjct: 808  ELAELSGQNGQLSDSARHLSWALRLYREVYPPGHLDLAAVHIQRGALAYRRGLYEDALGA 867

Query: 689  EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748
                                       L  L    G   FD                D  
Sbjct: 868  YR-----------------------DALDILRPYLGEAAFDVRALYANLAEARLALGDDA 904

Query: 749  TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808
                  +R    P   A+        +   +         R+ +   +          D 
Sbjct: 905  EALEELERVHASPVELAETPLLEAFLLG--LRGRALYGLGRMREAQTVLERALARYADDA 962

Query: 809  GTLF---HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865
            G      H      + + + + + + +   +++         +        R     +  
Sbjct: 963  GGALALEHADAAWAMAQLLAELSSDGDARARELAAQAGA---VYRARGPETRARLAAVER 1019

Query: 866  SFLEH 870
                H
Sbjct: 1020 WLAAH 1024


>gi|13346873|gb|AAA79984.2| soraphen polyketide synthase B [Sorangium cellulosum]
          Length = 8817

 Score = 39.5 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 71/590 (12%), Positives = 156/590 (26%), Gaps = 23/590 (3%)

Query: 258  VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317
             L  L+  +  AI     +  +     +          L   L     +R++   +    
Sbjct: 927  HLAPLEGGLWQAIERGDLDALSGQLHVDGDERRAALALLLPTLSSFRHERQEQSTVDAWR 986

Query: 318  NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA---DNEREEAISI 374
              +  + +  +++      + +       +           +    A        +A   
Sbjct: 987  YRITWKPLTTAETPADLAGTWLVVVPAALDDDALPSALTEALTRRGARVLALRLSQAHLD 1046

Query: 375  AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
              AL   L +   ++A I    +L    +  L        + AG+ LS +L  ++    L
Sbjct: 1047 REALAEHLRQACAETAPIRGVLSLLALDERPLA---DRPALPAGLALSLSLAQALGDLDL 1103

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
             A        A++     PLA       +       LE    R          +    + 
Sbjct: 1104 EAPLWFFTRGAVSIGHSDPLAHPAQAMTWGLGRVIGLEHP-DRWGGLVDVCAGVDESAVG 1162

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            R+       H     +          ++             T       T G  +I    
Sbjct: 1163 RLLPALAERHDEDQLALRPAGLYARRIVRAPLGDAPPARDFTPGGTILITGGTGAIGAHV 1222

Query: 555  KLT--VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                     Q++ L   R        E    LS+L ++       + A+      ++ +L
Sbjct: 1223 ARWLARRGAQHLVLISRRGAEAPGASELHDELSALGARTTLAACDV-ADRNAVATLLEQL 1281

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                +    +  +S +     L++        ++ G  EG    +   +   SR + + +
Sbjct: 1282 DAEGSQVRAVFHASGIEHHAPLDATSFRDLAEVVSGKVEGAKHLH---DLLGSRPLDAFV 1338

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
               +     G        A             +       S  L    V  G      + 
Sbjct: 1339 LFSSGAAVWGGGQQGGYAAANA--------FLDALAEHRRSAGLTATSVAWGAWGGGGMA 1390

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                      R L                  +    T +  +  +    P    AR    
Sbjct: 1391 TDQAAAHLQQRGLSRMAPSLALAALALALEHDETTVTVADIDWARFA--PSFSAARPRPL 1448

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
            L  +P  ++  + ++  +  H    +L+ K  +++  E   L+  ++   
Sbjct: 1449 LRDLPEAQRALETSEGASSEHGPAPDLLDKLRSRSESEQLRLLVSLVRHE 1498



 Score = 38.4 bits (87), Expect = 7.5,   Method: Composition-based stats.
 Identities = 75/615 (12%), Positives = 153/615 (24%), Gaps = 33/615 (5%)

Query: 240  PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299
                  +     HP G      +D     AI     +  +    ++          L   
Sbjct: 4541 QRERFWLDAPNAHPEGVAPAAPIDGRFWQAIERGDLDALSGQLHADGDEQRAALALLLPT 4600

Query: 300  LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359
            L     +R++   +      +  R +  + +      + +                   +
Sbjct: 4601 LSSFHHQRQEQSTVDTWRYRITWRPLTTAATPADLAGTWLLVVPSALGDDALPATLTDAL 4660

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
                A         + I      +  ++  A     R +   + L+      +  + AG+
Sbjct: 4661 TRRGARVLALRLSQVHIGRAALTEHLREAVAETAPIRGVLSLLALDERPLADHAALPAGL 4720

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479
             LS  L  ++    L A   L    A++     PLA       +       LE       
Sbjct: 4721 ALSLALVQALGDLALEAPLWLFTRGAVSIGHSDPLAHPTQAMIWGLGRVVGLE------- 4773

Query: 480  KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
                +       +   +        +P    R  E+   L    +        PL     
Sbjct: 4774 --HPERWGGLVDLGAALDASAAGRLLPALAQRHDEDQLALRPAGLYARRFVRAPL----- 4826

Query: 540  NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI-IETGSCI 598
                  G+   +       T L              W   +G     L S+   +    +
Sbjct: 4827 ------GDAPAARGFMPRGTILITGGTGAIGAHVARWLARKGAEHLVLISRRGAQAEGAV 4880

Query: 599  KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658
            + +A               V    ++S+   +L  L++       +   G  E   P   
Sbjct: 4881 ELHAELTALGARVTFAACDV---ADRSAVATLLEQLDAGGPQVSAVFHAGGIEPHAPLAA 4937

Query: 659  AKNPFLSRVMQSDLNLKTAEKYIGQAA--HDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
                 L+ V+   +        +  +     F + +    +                  L
Sbjct: 4938 TSMEDLAEVVSGKVQGARHLHDLLGSRPLDAFVLFSSGAVVWGGGQQGGYAAANAFLDAL 4997

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP-------FPPLEAQPRT 769
                   G                 T  L    +Q       P          LE    T
Sbjct: 4998 AEQRRSLGLTATSVAWGVWGGGGMATGLLAAQLEQRGLSPMAPSLAVATLALALEHDETT 5057

Query: 770  YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829
             + ++I      P    AR    L  +P  ++  + +   +   +  T L+ K  N++  
Sbjct: 5058 LTVADIDWARFAPSFSAARSRPLLRDLPEAQRALEASADASSEQDGATGLLDKLRNRSES 5117

Query: 830  EINHLMKQIIDSHFE 844
            E  HL+  ++     
Sbjct: 5118 EQIHLLSSLVRHEAA 5132


>gi|256377677|ref|YP_003101337.1| cyclic nucleotide-binding protein [Actinosynnema mirum DSM 43827]
 gi|255921980|gb|ACU37491.1| cyclic nucleotide-binding protein [Actinosynnema mirum DSM 43827]
          Length = 8211

 Score = 39.5 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 93/833 (11%), Positives = 188/833 (22%), Gaps = 64/833 (7%)

Query: 87   EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146
            E   AD          +++ +R L L        +     +  L+ E     P + A   
Sbjct: 3750 ETALADPARPLGRIDVLTDAERRLLLVERNRTAHHDPVTSLPALFAEQVRRTPDTTAVVF 3809

Query: 147  WLAKNLADIIDI--------IETEEKKWEDLHALKNEKYGMWWLLAADFLK------IAS 192
               +     +D         +       E + AL+  +     +     LK         
Sbjct: 3810 GEVELTYAELDARSDALAHVLVGRGAGPERVVALRLPRGVEQLVALLAVLKSGAAYLPVD 3869

Query: 193  KYWTERLVELNASS------------------PVGYQIALMRAEAEHLMKGTKGPIIIAG 234
              +    VE   +                                 H  +     I  +G
Sbjct: 3870 PDYPAARVEFMLADARPVLVLDDPADVRAHWHATDRHDTAAPLGTGHDPRHPAYVIYTSG 3929

Query: 235  STGS-------IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
            STG+         A   L+        G +          +   +     S  +      
Sbjct: 3930 STGTPKAVVMPSGALVNLLRWHHRALGGEVGARVAQFTSTSFDVSAQEILSALLFGKTLV 3989

Query: 288  YSTHPQYSLAKLL-DFLDIKREDVKRLGN--VSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                 Q   A+LL D+LD  R +     +  +       +            +       
Sbjct: 3990 APDEEQRRSAELLVDWLDRHRVEELYAPDLVLEAVAEAANERGRDLPALRLLAQAGEAMR 4049

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
            L   +   Q+     +L       E  +  A  L   L        +     N A  V  
Sbjct: 4050 LGGALRQFQRRVPGRSLHNHYGPAETHVVTAFPLPADLSACPLPVPIGRPVANTAVYVLD 4109

Query: 405  ELTRFGINIDIS----AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460
               R            AG  L+    +    +    +         + + +         
Sbjct: 4110 AALRPVPPGVPGELYLAGAGLARGYLNRPGLTSARFVADPF-GGPGSRMYRTGDVARWRA 4168

Query: 461  EKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLS 513
            +  L     A + V +RG +     ++         +  +    +           +  +
Sbjct: 4169 DGELEFGGRADDQVKVRGFRVEPGEVEAVLAGHPEVARAVVLARSDAPGGARLVGYAVPA 4228

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                  A  L  H+   +   +   +        L+ +                E  + P
Sbjct: 4229 PGRAPTARALRAHLADLLPDHLVPSSVVLLDAIPLTPNGKLDRAALPAPGTDEPEAARRP 4288

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
                EE  + L +    + E G      A+    ++   +    V+  +     L  L  
Sbjct: 4289 RTPREEILRELFAEVLGLPEVGVDEDFFALGGHSLLATRLLSR-VRATLGAEPGLRALFE 4347

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MAN 692
              +       L  GG+   +  +       LS   +    L+  ++  G           
Sbjct: 4348 APTAAGLATRLSGGGVRAPLTARPRPALVPLSPAQRRLWFLEQVDEASGAYHLPLALRLT 4407

Query: 693  GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
            G       RS  ++      S    R +              G     W          P
Sbjct: 4408 GPLDREALRSALDDVAARHES---LRTVFPDRDGVPAQAVLDGVRVP-WAVVDATGADLP 4463

Query: 753  HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
               R                      +  P       +L       +   P   D  T +
Sbjct: 4464 PLLRACAVREFVLAVEQ--PVRAALFVTGPDEHVLLVVLHHIAADGWSMGPLSRDLATAY 4521

Query: 813  HNIITELIKKRINKNTPEINHLM--KQIIDSHFEKENLPPHIDIIWRHLFHKI 863
                               ++ +  + ++    ++          WR     +
Sbjct: 4522 AARCRGEAPAWAPLPVQYADYALWQRDLLGDEGDEGGEFARQVAHWRTRLAGL 4574


>gi|217425608|ref|ZP_03457100.1| non-ribosomal peptide synthase [Burkholderia pseudomallei 576]
 gi|217391385|gb|EEC31415.1| non-ribosomal peptide synthase [Burkholderia pseudomallei 576]
          Length = 2979

 Score = 39.5 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 56/705 (7%), Positives = 147/705 (20%), Gaps = 54/705 (7%)

Query: 196  TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
              R   L A +P       + A  + +++     +           +   +   A     
Sbjct: 1085 PARDAALGAVAPRNDTQRALCAIWQAVLRVPALGVT-DNFFAVGGDSILSIQAAARAREQ 1143

Query: 256  AIVLPGLD---CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
             IV    D         +   +  +     +   +    P   +      +D    D   
Sbjct: 1144 GIVFSARDIFRHQTVELLAAHVRWQQAPDEARRASAGDMPLLPIHHWFFEVDSTHVDHYH 1203

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
               + +   G      +++L    +      +     P   +        EA +    A 
Sbjct: 1204 QSRLLDVPAGVDAAFVRAWLAALVARHDALRLRLRDTPAGWRA----HFAEAPHADASAR 1259

Query: 373  SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432
             +   +  +   +        A        +  +      + ++A +    T    +L  
Sbjct: 1260 LMVCDVAWAGAPD-------AALDAFFADARRGVRLADGPLFVAALVAAGATGRGRLLLI 1312

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
              +A+     +  I   ++   A++           +       R    + D   L +  
Sbjct: 1313 GHHAVVDGVSWRVIVADLRRTFAQWPALRPVAPGPASDAYQAWARAIVAAADSPALHAER 1372

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
               +   +              +    A  +    L              +         
Sbjct: 1373 AHWLRVLRAPAPALRLDRAAGGDATRRATRIGAVSLNAADTRALLADTHRAYRTQTIELL 1432

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
               L +   +    D  R        E          + +            +      L
Sbjct: 1433 LAGLLLAFRRWQGHDALRIALEGHGREADALAHYGAERGLPDVGETVGWFTSYYPQWLTL 1492

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                +       S    I+             I  G+   V           +   +   
Sbjct: 1493 AGAASAPAPAADSVAAAIMAVKTQYRATPRHGIGYGILRYVAGDPELAAEAAAHAPEIVF 1552

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN-----NIPTIASRWLQRLLVLGGTDF 727
            N           A    + + +       +         +           +   G    
Sbjct: 1553 NYLGQFDVANDEAAGIAVLDLSSRDDIAAARPREHALGIDGGVKDGCLAFEIDYSGAAFD 1612

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
             +++   G  ++   R++    K     RP P     A                      
Sbjct: 1613 DESIAAFGAHFMHALREIAAHCKACAAWRPTPEDFPLAAVTQAELDVWHA---------- 1662

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                                     H  +  L      +     + L+ +   ++  + +
Sbjct: 1663 ------------------------RHPSLETLYPATAIQRGMVFHSLLPKQASAYTNQVH 1698

Query: 848  LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                              + LE    ++++        P ++ + 
Sbjct: 1699 ARVGGGTFDAARLRHAWQTVLERHAALRTAFVGFEREQPLQIVLA 1743


>gi|114319988|ref|YP_741671.1| hypothetical protein Mlg_0827 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226382|gb|ABI56181.1| conserved hypothetical protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1137

 Score = 39.5 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 75/709 (10%), Positives = 170/709 (23%), Gaps = 24/709 (3%)

Query: 84  VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
           +  ++     L         +  +R      L+ +   +     +D     P  +P+   
Sbjct: 175 LASDEARLPELSEAVAEAQRARERRQACEQALLALDAARELRHQEDRLARYPDPMPVGLT 234

Query: 144 NAI---------WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
                        LA+ LA   D     E   +                A +  +  ++ 
Sbjct: 235 RDRLETLEQQEAELARALASARDDQARAEADRQATGLADGGPPPAELQAAGEQARRLTRL 294

Query: 195 WTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTV 249
             +        +      A               +    P  +AG              +
Sbjct: 295 EEQVRHTHEQLAATRRAAAQAARALGRGPDDDRAQPALSPEELAGLERLAHEAHAARERL 354

Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH--PQYSLAKLLDFLDIKR 307
                    L         A       +             H                  
Sbjct: 355 QALDARLATLEPNAEPFDPAPLERGCHELRRWLRQPAPRPLHWLGLGLTGLGGAGTAALG 414

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP-NIQKCFSDVALIEADN 366
             +     V++ +   + + + +       D R ++    ++P    + + + A+ +  +
Sbjct: 415 LTLGHWPTVASSLVVLAGLGASAVAMGRRRDRRESETRFTELPLPAPEVWEEAAVRQRLD 474

Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
           E E+A   A +L+    E  +  A     R      +  L R    + + A +PL+    
Sbjct: 475 ELEQAWHQARSLQQRRQEADQLHAQRGRARTEQAEAEQALHRHAAALGLDAELPLAFDRA 534

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
             +L+    A  +     A+       L        +           A R  ++     
Sbjct: 535 VRLLSRHQEAREQQAAQEAVLDRQAQELDTLRDTLHHFLA----TWHTAPREERSEALGA 590

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            L  L     A ++      +    + E +++L               +           
Sbjct: 591 ALDDLRQRCEAAERARQQADNATRLIRELERQLRDTRRQLDQLYHDAGLQPDQRATLLER 650

Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
              + +W +     L+    +   +  +L  + +   +  L +           +A E  
Sbjct: 651 IDQLPEW-QACRQALEAARSNYRLRREDLEGQADPDIIEWLEAGDEPALRRAAEDAAEAA 709

Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
             +  L +         +         LE  L   +        E     + A   FL  
Sbjct: 710 GRLEPLREERA--GIRTRLEQTRQRHDLEEALAQREEAREALAGEREQALSAAAARFLLE 767

Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
            +          + + +A   F      R+ +     +        S   Q L  L    
Sbjct: 768 RVARRHEQAHRPEALARADRLFARFTHQRYGLRLGPDQRLQAMDHHSEQPQPLERLSTGT 827

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
               L      +L+   +          +      P   Q    S + +
Sbjct: 828 RMQLLIALRVAWLEQLERQTRPLPLILDEALTTTDPERFQAVAGSLAAL 876


>gi|226945099|ref|YP_002800172.1| chromosome segregation protein SMC [Azotobacter vinelandii DJ]
 gi|226720026|gb|ACO79197.1| chromosome segregation protein SMC [Azotobacter vinelandii DJ]
          Length = 1162

 Score = 39.5 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 78/774 (10%), Positives = 187/774 (24%), Gaps = 35/774 (4%)

Query: 86  EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145
           +E       L   L   +  +QR  + A      + +   +   L      +L       
Sbjct: 188 QENLARLSDLREELERQLERLQRQAQAAEKYQECKAEERRLKAQLAALRWRALNEQVGQR 247

Query: 146 IWLAKN----LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI---------AS 192
             +  +    L  +I      +   E L    ++    +  +   F  +         + 
Sbjct: 248 EQVIGDQEVALEALIAEQRNADAGIERLRDEHHDLAERFHQVQGRFYSLGADIGRVEQSI 307

Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
           ++  +RL +L        +    +  A HL +       +      +     + +  A  
Sbjct: 308 QHGQQRLRQLQNDLQEAEKNR--QETAAHLDQDRLALAEVDEELARLEPEREVAAAAAEE 365

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
               +       H     W+   + S     S      H Q     L   L+ +R     
Sbjct: 366 SAARLEEAESAMHAWQEQWDAFNQHSAQARRSAEVQQAHIQQLEQSLGRLLERERRLGDE 425

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
              +  +     +      L             E  +    +      L +A  E+ +A 
Sbjct: 426 RARLEADPQESGIAELAERLALGELTQEELGAAEAALSETLERLRG-ELQQATREQRQAQ 484

Query: 373 SIAIAL--RMSLDENKKKSALITADRNLARRVKLEL---TRFGINIDISAGIPLS-TTLH 426
                L  R++  E  +++AL           +  L    R    + +  G  L+  T+ 
Sbjct: 485 DELQRLNGRIASLEALQQAALDPGQGVAEWLREQHLEARPRLAEGLRVEPGWELAVETVL 544

Query: 427 SSILTS-LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485
            + L + L+     L         ++   A  G      S        + L         
Sbjct: 545 GADLQAPLVEDFAALALDAFAQGELRLLGAAPGATRLAGSLLDKVESGIDLAPWLGRVMA 604

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
           ++  +  L+R +       +                   D     +      +  +    
Sbjct: 605 VESLAEALERRSALGEGESLISRDGYWVGRHFLRVRRAGDADSGLLARAQELERLQAGRD 664

Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNL-----WFEEEGKTLSSLFSKIIETGSCIKA 600
              +     +  ++ L      +      L         +   L +  S +      +  
Sbjct: 665 ELEARLAELETRLSALDEARRRQEEGREELRRRLQEETRQQGELKARLSALQARAEQMLL 724

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
               + + +  L +   ++ +      L +   L       D + +              
Sbjct: 725 RRRRFDEELAELDEQRALEVERLGECRLQLQDAL-------DAMAVDNERREQLLAGRDA 777

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
                  ++ +        +          A           L      T   R    L 
Sbjct: 778 LRESLERLRREAGAHKERAHQLAVRLGSLQARRDSTRQSLERLERQFERTRERREQLSLD 837

Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
           +  G    + L+ + +  L+    ++   +Q           L    +    +E +    
Sbjct: 838 LEEGAAPLEELRMKLEELLERRLAVEEELRQAGLSLEDAERGLREVEKRRGQAEQQAQSL 897

Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
                  R   +   +          + G   H ++  L  +    +       
Sbjct: 898 RGQLEQQRLDWQALSVRRKALQDRLQEEGQALHEVLGTLPAEAREVDWETELER 951


>gi|323136710|ref|ZP_08071791.1| chromosome segregation protein SMC [Methylocystis sp. ATCC 49242]
 gi|322398027|gb|EFY00548.1| chromosome segregation protein SMC [Methylocystis sp. ATCC 49242]
          Length = 1151

 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 66/698 (9%), Positives = 173/698 (24%), Gaps = 34/698 (4%)

Query: 213 ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
            ++ A+ +   +  +    +AG           ++  + +      +         ++  
Sbjct: 151 EIISAKPQARRRILEDAAGVAGLHSRRHEAELRLNAASENLTRLEDVLKQVESQSDSLKR 210

Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
              + S     +          +L       D  R+  ++L      +  R++  +++  
Sbjct: 211 QARQASRYRDLAAKIRQNEALAALVSYQIATDQLRDAAQKLEADLRNVQARTLEQAEAAK 270

Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEA-----DNEREEAISIAIALRMSLDENKK 387
               +      + E +          VA  +A        R+    +   +     + ++
Sbjct: 271 FQAIAAHELPALREREAEAGAAVHRLVAARQALEADEQRARDRVTELTRHIEQFARDLER 330

Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGI------------PLSTTLHSSILTSLLN 435
           + ALI     +A+R++ E            G                    +++  +   
Sbjct: 331 ERALIEDAAQVAQRLEDEREELIGADSQDGGREQEARERLAEIESALAETEAALGDAQEQ 390

Query: 436 AIFKLNDFMAIATLVK--HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
                    AI T ++  +        E      + AL      G + +  + +   + +
Sbjct: 391 LAGVNARRAAIETALRDENQRVARFEAELTRLDTEFALIAGQGGGAEEAARLAEAFEMAV 450

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
           +          +     R + E +  A   ++        L T      +   + S   W
Sbjct: 451 EEARAADETAQMAEEAQRDAREAESAARQPMEQATLRAQRLETEVRTLENLLQSGSGGLW 510

Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA---------IE 604
             +  +       +           +     S+     + + +   A           ++
Sbjct: 511 APVVESVTVEKGYETALGAALGDDLDASAETSAPAHWALTSDAGDPALPSGVRPLGEMVQ 570

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
               + R +    V  + E  S   +L   +  +     L             TA    L
Sbjct: 571 APAALRRRLAQIGVVLRGEGESLRKLLKPGQRLVSREGDLWRWDGFTQAAEAPTAAARRL 630

Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
               + +     AE    QA    E     R      ++ +        R   RL     
Sbjct: 631 VEKNRLEDLRAEAELARAQADALSEELEAAREATRLAAMADAQARDAQRRARVRLEEARE 690

Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
                   +R          L+    Q    R +     +    + + S          A
Sbjct: 691 RHSAAE--RRQAQIGQRLSALEEAKAQTLANRDEAVQKRD----SLAASLDALEEPASLA 744

Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844
                +     +   +    R     L H +     +              +        
Sbjct: 745 GALESLRSRAMVERAQAGEARAALAALRHEVNARASRVAAITREIASWAERRDRAQDRIG 804

Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
           +           +    +   +F++    + +++E+  
Sbjct: 805 ELEERLESAREEQERLAESPDAFVQQRRALMNALEEAE 842


>gi|329664168|ref|NP_001192870.1| protein SOLO [Bos taurus]
 gi|297479295|ref|XP_002690783.1| PREDICTED: Protein SOLO-like [Bos taurus]
 gi|296483463|gb|DAA25578.1| Protein SOLO-like [Bos taurus]
          Length = 1520

 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 65/622 (10%), Positives = 155/622 (24%), Gaps = 28/622 (4%)

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY-STHPQ-YSLAKLLDF-LDIKREDV 310
             GA +L   D            +   +   S + +  TH Q   L  L    L   R+ +
Sbjct: 640  QGAELLSEGDLKRVAKPEELQWDLGGHREPSPSHWVETHQQVARLCHLCRGVLGSIRQAI 699

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
            + L   +       + + +                +     ++   +  + +E       
Sbjct: 700  EELERAAEPEGEEVVGMPEPLQKVLADPRLTELQRDGGAILMKLRSTHSSKLEGPGPAAL 759

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430
               +  A+   +  +      +   +   R+    L +    +       L++   +   
Sbjct: 760  YQEVDEAIHQLVRLSN-----LHVQQQEQRQRLHRLQQALQWLSGPGEEQLAS--FAVPG 812

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             SL         F A +  V+  LA+          A +   L          +    ++
Sbjct: 813  DSLPALQETELRFRAFSAEVQERLAQARETLALEEDAASQKLLDVFEQRLEQVESGLHRA 872

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            L L R   Q +                  AVL    + +   P         +   +L  
Sbjct: 873  LRLQRFFQQAHEWVDEGSARLAGAGPGREAVLAALALRRAPEPSAGTFQEMRALALDLGS 932

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
                +    C       E R    L  E   +      +    +G   +        + +
Sbjct: 933  PAALREWGRCRARCQELERRIQQQLGEEASPRGHRRRRADSASSGGAPRGPHSPSPSLSS 992

Query: 611  RLIDGETVKPKIEKSSTLFILGTL----------ESRLLNFDTLILGGLNEGVWPKNTAK 660
             L+             +L   G            E+      T+++ GL           
Sbjct: 993  LLLPSSPGPRAAPSHCSLAPCGEDYEEEGAELGPEAEGRPPRTVLIRGLEVTSTEVVDRT 1052

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
                  V+            +G    + + +   +  + +  +        A   L   +
Sbjct: 1053 CSPREHVLLGRAGGPEGPWGVGTPRMERKRSISAQQRLVSELITCEQEYVAA---LSEPV 1109

Query: 721  VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
               G +    L+      L    +L    +    +  +       +              
Sbjct: 1110 PPPGPELTPELRGTWAAALSARERLRSFHRTHFLRELQGCATHPLRIGACFLRH-----G 1164

Query: 781  DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
            D +++YA+ +     +           +GTL          ++  +       L+++++ 
Sbjct: 1165 DQFSLYAQYVKHRHKLETGLTALSPPTKGTLEGGPHLPRALQQPLEQLARYGRLLEELLR 1224

Query: 841  SHFEKENLPPHIDIIWRHLFHK 862
                + +           L  +
Sbjct: 1225 EAGPEPSSERQALGAAVQLLRE 1246


>gi|167619518|ref|ZP_02388149.1| non-ribosomal peptide synthetase, putative [Burkholderia
            thailandensis Bt4]
          Length = 2646

 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 55/655 (8%), Positives = 140/655 (21%), Gaps = 58/655 (8%)

Query: 246  MSTVANHPNGAIVLPGLD--CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            +   A      IV    D   H    +        T       +    P   +      +
Sbjct: 806  IQVAARARQQGIVFSARDIFRHQTVELLAANVRWRTPSDERQPSAGDMPLLPIHHWFFAV 865

Query: 304  DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
            D    D      + +   G       ++L    +        +     ++          
Sbjct: 866  DSTHVDHYHQSRLLDVPAGVDADFVAAWLEALVA------RHDALRLRLRNTREGWRAHF 919

Query: 364  ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423
            AD    +A +    L +        S           R ++ L      + ++A +P   
Sbjct: 920  ADPSAHDASA---RLAVCDRAWADTSDAAIDAFFADARRRVNL--ADGPLFVAALVPAGA 974

Query: 424  TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
                 +L    +AI     +  I   ++   A++     +     +       R    + 
Sbjct: 975  RGRGRLLLIGHHAIVDGVSWRVIVGDLRQAFAQWSARGSFALGPASDAYQAWARAIAAAA 1034

Query: 484  DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
            D   L +     +   +              +    A  +    L              +
Sbjct: 1035 DSPALHAQRAHWLRVLRAPAPSLRLDHGAGGDTTRRATRIWPFGLNAADTRALLADTHRA 1094

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                        L +   +    D  R        E            +           
Sbjct: 1095 YRTQTIELLLAGLLLAFRRWRGHDTLRIALEGHGREADALARYGVECTLLDVGETVGWFT 1154

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFI--LGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
             +  +   L            +               L +  L     +  +  +  A  
Sbjct: 1155 SYYPLWLTLSGAAQAADPAAAAIMAVKAHYRATPHHGLGYGILRHLTGDPELAAEEAAHA 1214

Query: 662  PFLSRVMQSDLNLKTAE----KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            P +        ++   E      +  ++ D   A   R      +    +          
Sbjct: 1215 PEIVFNYLGQFDVADDETAGVAVLDLSSRDDVAAARPREHALGINGEVKDGCLA-----F 1269

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
             +         +++   G+ +    R++       H      + P        + ++ + 
Sbjct: 1270 EIDYSADAFDDESIAALGEHFAHALREI-----AGHCNARAAWCPTPEDFPLAAVTQDEL 1324

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
                    +AR                    G +FH+++        N+           
Sbjct: 1325 AA-----WHARH-----PSLETLYPATAIQWGMVFHSLLPNQASAYTNQV---------- 1364

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                                    +   + +E    ++++        P ++ + 
Sbjct: 1365 ---------YASVGGGAFDAARLRRAWETVIERHAALRTAFVGFEREQPLQIVVA 1410


>gi|330820734|ref|YP_004349596.1| syringopeptin synthetase [Burkholderia gladioli BSR3]
 gi|327372729|gb|AEA64084.1| syringopeptin synthetase [Burkholderia gladioli BSR3]
          Length = 5649

 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 81/837 (9%), Positives = 171/837 (20%), Gaps = 103/837 (12%)

Query: 105  NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
                   L +L+     + PD I  +     LS     A A  LA  L  +         
Sbjct: 2595 PFPEDACLHQLVEQQAARRPDAIAVVDARERLSYAELNARANRLAHRLRRL-------GI 2647

Query: 165  KWEDLHALKNEKYGMWWLLAADFLKI------ASKYWTERLVELNASSPVGYQIALMRAE 218
              +D  AL  E+     +     +K           +    +    +             
Sbjct: 2648 APDDRVALCMERGAAIVVAILAVMKAGGAYVPLDPSYPAERLAHMLADSAPVAALTDSRS 2707

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI-------- 270
               L        +         A +     V + P G I L                   
Sbjct: 2708 RARLAGLPAAVPV---FELDTQADSWRDEAVDDLPPGEIGLNAGHLAYVIYTSGSTGTPK 2764

Query: 271  -----WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK-RLGNVSNEMYGRS 324
                    +   +  I +S            A       I    +    G          
Sbjct: 2765 GVMIEHRGLVNHAVAIIASFEVREDSRVLQFASTSFDASISEVVMALCRGAALYVPADGI 2824

Query: 325  MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI-------- 376
                ++       +      L   +    +    +A         EA   A+        
Sbjct: 2825 RQDRRALWAYLEREAITHATLPPALLQDGEALPPIATRPTLTLAGEAPGAALFRALAGQA 2884

Query: 377  -------------ALRMSLDENKKKSALITADRNLARRVKLELTRFGINID-------IS 416
                                        +   R +       L   G  +          
Sbjct: 2885 VLLNGYGPTEGTVCAAAWRCPPGFDDDTVPIGRPIGNVRLYLLDAHGQPVPVGTPGEIHI 2944

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
             G  ++    +    S    +         A + +        P+  L       + V +
Sbjct: 2945 GGAGVARGYLNQPALSAARFLRDPFSETPHARMYRSGDLARYQPDGNLVFLGRNDDQVKI 3004

Query: 477  RGNKNSYDIMDLK---------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
            RG +     ++ +           V+ R     +   V ++ +   + +   A  L +H 
Sbjct: 3005 RGFRIELGEIEARLAELEGVREVAVIVREDAAGDRRLVAYYTAADGQAEVAGAEALREHA 3064

Query: 528  LQCI---------TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC--LDEHRKLPNLW 576
               +           L       N      ++                  +  R L  +W
Sbjct: 3065 ANRLPRHMVPAAYVALDALPLTANGKLDRRALPAPEAGAYARRDYAAPQGEAERLLAEVW 3124

Query: 577  FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
                G    S      E G            +    ++ +        +          +
Sbjct: 3125 STLLGVEQVSRHDNFFELGGHSLLAVRLVAKLREAGLEADIQTLFGAPTLAELAASLHTA 3184

Query: 637  RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL------------KTAEKYIGQA 684
                     +      + P   +        + + +                A    G  
Sbjct: 3185 SDHAVPPNRIPADARHLEPSMLSLVELDQAEIDAVVATVPGGAANVQDIYPLAPLQEGML 3244

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
             H    + G      +R            R++  L  +             +   +  + 
Sbjct: 3245 YHHLAQSEG--DAYLSRVRFGFGSRAALERFVAALQAVVTRHDVLRTGIAWEGLREPVQV 3302

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
            +    + P  +     P L             Q   DP     R  L+       +   D
Sbjct: 3303 VRREARLPAEEVTGLDPALGEVGLQL------QDRFDPRHF--RIDLRQAPPMTIRYTHD 3354

Query: 805  RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLF 860
                  +   +   +       +   +   +   +D  ++    PP     + R   
Sbjct: 3355 AAADSWVLLLLTHHIALDHT--DIAILLREVAAHLDGSWDTLLPPPAFRDHVARARL 3409


>gi|145224767|ref|YP_001135445.1| chromosome segregation protein SMC [Mycobacterium gilvum PYR-GCK]
 gi|145217253|gb|ABP46657.1| condensin subunit Smc [Mycobacterium gilvum PYR-GCK]
          Length = 1194

 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 71/798 (8%), Positives = 173/798 (21%), Gaps = 67/798 (8%)

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
           L+  L   +  + R  E+AR     +  L D    L  +  ++      +       L  
Sbjct: 194 LTTELRRQLKPLGRQAEMARRAQTIQADLRDARLRLAADDLVARKAEFDDTDQAETTLRR 253

Query: 155 IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
             D +                          +       + T        +     +   
Sbjct: 254 EHDELTE---------------------RLQERAAELDAHETAVEDLSERADAAQQRWFR 292

Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           + A AE +                            +         G D     A  + +
Sbjct: 293 LSALAERV----------------SATVRIASERAQHLDGDPDFSAGPDPDELEAQADAV 336

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
            E+   +           Q  L    + L  + +                    +     
Sbjct: 337 AEQEQQLLDELAES----QERLEAAREELAEREQAAAEAERAHMAAARAEADRREGLARL 392

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
                     +E+    + +  +++    A  +  +A    +  R+   +  +       
Sbjct: 393 SGQVDTMRTRVESVDETVARLTANIDDAAARAQLTQAEFETVQARVGELDAGE-----VG 447

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                 R    L      +        +     + L + ++A+    D    A  ++   
Sbjct: 448 LDEHHDRSVAALRLADERVAELLAAERAAERQVASLQARIDALSVGLDRRDGAAWLQENH 507

Query: 455 AK---------------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
           +                             A  L A         +  LK     R A  
Sbjct: 508 SGAGLFGSIANLVKVRAGHEAAIAAMLGAAADALAAEDFGAARAAVAALKESDGGRAALV 567

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
             +       +         AV LV+   +    +    +         +  D       
Sbjct: 568 LGDWPAQEAVTGQLPAGAAWAVDLVEPADRVRGAVTAMLSGVAVVENLTAALDLVAAQPR 627

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                   +      +    + K  +      ++       +A      ++  + G   +
Sbjct: 628 LRAVTADGDLVGAGWVSGGSDRKPSTLEIQSEVDRARSELVDAERRTGELSAALSGALAE 687

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
               + +    L  L         +    L         A + +   + Q D       +
Sbjct: 688 QAARQDAAEHALAALNESDAAISAIYE-QLGRLGQDARAADDEWQRLIRQRDEMEAGRNR 746

Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
            + + A         +      +   +     A+    R   +         ++R     
Sbjct: 747 TVSELAELELRLQNAQREPMFDAEVVDRTEFTAAAEAARSAEVEARLSVRTAEERANAVR 806

Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                L          R +     EA+    + +          A      + +      
Sbjct: 807 GRADSLRRAAVAEREARVRAQRAREARVHAAAVAAAVAESGRAVAQRLADAVSVASRIRD 866

Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
           +   +R  R         E+     N+ T  I  L   +      K      I+ + + +
Sbjct: 867 EVAAERQVRAGALTKAREEV-----NELTARITALTDALHRDEVAKAQAALRIEQLEQQV 921

Query: 860 FHKISHSFLEHEEKIQSS 877
             +   +  +   +    
Sbjct: 922 LEQFGMAVADLVAEYGPD 939


>gi|72163233|ref|YP_290890.1| hypothetical protein Tfu_2834 [Thermobifida fusca YX]
 gi|71916965|gb|AAZ56867.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 1652

 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 65/826 (7%), Positives = 184/826 (22%), Gaps = 62/826 (7%)

Query: 85   VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              +      L        V  I   L + R++             ++     +       
Sbjct: 427  ARQPTGTGPLERVGNADLVRGISDALAVTRMVREMA-----PSGPVFDGLIAACTRILDQ 481

Query: 145  AIWLAK-NLADIIDIIETEEKKWEDLHA--LKNEKYGMWWLLAADFLKIASKYWTERLVE 201
              WL+   L ++ + +       E +     K ++       A D  +        R+  
Sbjct: 482  HYWLSDPELENLAEPLTQVRATAEQVVDEFAKVQELTAQARRALDETEADITALVRRIRA 541

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
               +S   +  +L           T   +    +         L S  A+    A+    
Sbjct: 542  EVPTSADEWVRSLAEMRRARGRAETLRDLRYVDTARLDALIDTLESATADAGRRAVEFLS 601

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
                            +     +    +   Q  LA+  D L+   E V  L      + 
Sbjct: 602  GADAFADYHSAVAALAAEAEAIATVADAEPVQRRLAEQTDGLETVTEVVGSLEAADATVR 661

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-DVALIEADNEREEAISIAIALRM 380
             R +  +   L          D    ++ + ++           +     A++ A     
Sbjct: 662  TRILEQAAEVLATINRARAIVDARRRELLSAERKAEFAAEFALLEQSVAGALAAADTPEA 721

Query: 381  SLDENKKKSALITADRNLARRVKLELTR---------FGINIDISAGIPLSTTLHSSILT 431
              ++  +    +    +        L +           ++    A +         ++ 
Sbjct: 722  CDEQLGRLLLRVDGLTSRFAEFSDFLAQLETKRDDIYEALHARKQALVDERMRRADRLVE 781

Query: 432  SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL----SRAKNALELVALRGNKNSYDIMD 487
            S    +  +    A    +      F              +       +R  +    +  
Sbjct: 782  SAERILASVRRRAATFGSLDEVTTFFTSDPMVAKLRSLAEELRELGDQVRAEEVDGQVAA 841

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
             +      +  +++         +L      +    ++  +      + Y          
Sbjct: 842  ARQEAGRALRDRQDLFADDGTTIQLGRHRFAVNTQPLELTMVPHEGRMAYVITGTDYRSW 901

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            ++  D+ + T        + E   +    +       ++   +   + S ++  A +   
Sbjct: 902  VTDPDF-EKTRPFWDQPLVSESPDVYRAEYLAAELLAAAEAGRNGLSLSALRKAAEDRDA 960

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
            ++  +      +        +          +    +   GL         A   +    
Sbjct: 961  LLAVVRREAESRYDEGYERGVHDHDAAAILAVLVRLVDRAGLLRYPGRCRAAAQMWW--- 1017

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
                      ++           A   R L+  RSL  +      +     L        
Sbjct: 1018 ---AYGTAAPDRQE--------WAARARSLVRARSLFGSGTADALAELAAELEEQVTVFL 1066

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
                    + +                    P   + +          +  +       A
Sbjct: 1067 TTTGLDAYRDWAAGA-----GGYLVEELAASPEGFVTSPGARSLVDRFRDALGPDQDFTA 1121

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
                                R  + H  ++     R + +T ++   +  ++     +  
Sbjct: 1122 ---------ELAALGSKVAARFRVVHAWLSAFAATREDVDTADLPEAVALLLADTLPRYP 1172

Query: 848  LPPHIDI-----------IWRHLFHKISHSFLEHEEKIQSSIEKIF 882
                +             I           FL+   + ++     +
Sbjct: 1173 AEGALTAAVDGLLGVHPRIQERRLEVRLDEFLDRLRRFRTERVPAY 1218


>gi|120402806|ref|YP_952635.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
 gi|119955624|gb|ABM12629.1| ATP-dependent DNA helicase, Rep family [Mycobacterium vanbaalenii
           PYR-1]
          Length = 710

 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/416 (8%), Positives = 102/416 (24%), Gaps = 43/416 (10%)

Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275
                   +      ++       P   R++       +   V+   D +     +   +
Sbjct: 223 DPAVAQEFRDRYRCFVVDEYQDVTPLQQRVLDAWLGGRDDLTVV--GDANQTIYSFTGAS 280

Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335
            +     S        P  ++ +L        + V         +  R +  ++  +   
Sbjct: 281 PRYLLDFSRRF-----PDAAVVRLERDYRSTPQVVS--------LANRVIAAARGRMAGS 327

Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALIT 393
              +                       E  +E  EA ++A ++   ++      + A++ 
Sbjct: 328 RLHLVGQRPPGPDPV----------FKEYPDEVAEATAVARSIAKLVESGTAASEIAVLY 377

Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                +   +  LT  GI   +  G    +          L  + +        +L +  
Sbjct: 378 RINAQSEVYEEALTEAGIAFQVRGGEGFFSRQEIRQALLALQRLAERGLQDTADSLPEF- 436

Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                         + ALE + L            +   L  +A   ++      Q  L 
Sbjct: 437 -------------VRAALEPLGLTAEPPPGAQARDRWEALVALAELVDDEVAQRPQLDLH 483

Query: 514 EEDKELAVLLVDHILQCITP--LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
               EL           +    L +    K      + +      T+     +      +
Sbjct: 484 GLLAELRQRADSRHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPDSE 543

Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
                       ++     +  + +  +          +R ++G   + + +   +
Sbjct: 544 PVEEERRLLYVGVTRARVHLTLSWALARKPGGRQGRRPSRFLNGIAPQSQRDDGPS 599


>gi|329940740|ref|ZP_08290020.1| secreted protein [Streptomyces griseoaurantiacus M045]
 gi|329300034|gb|EGG43932.1| secreted protein [Streptomyces griseoaurantiacus M045]
          Length = 378

 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/313 (8%), Positives = 61/313 (19%), Gaps = 7/313 (2%)

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
           L     +       L       +    L          +  L     G   +    +   
Sbjct: 62  LTRALASLRPGAYGLVGEGVHAVVGQVLTGADRSADTVVRRLERVTHGSLETGDKVRFTP 121

Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                       +D     + GE       +   +     +    L         L   +
Sbjct: 122 ELHVGDPGGALGLDHSDVTLSGELGPLPAWRVPGVRDTWVIAVHGLGSSRAHPMNLMRFL 181

Query: 654 WP-------KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
                     +   +P          +L   E     AA    + +G R ++        
Sbjct: 182 HRHDLTVLAPSLRGDPGAPPSPDGLHHLGDTEWRDVDAALHHAVRHGARRVVLYGWSTGA 241

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                A+        + G      +  R        R                   L   
Sbjct: 242 TAALAAAARSALRDRVVGLVLDSPVLDREATLRALARARHAPRFLLPLAVRAAQGKLRWD 301

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
           P           +  P  ++      +      ++         + H +         N 
Sbjct: 302 PERLRQRVDPGRLTKPVLIFHGPGDAVAPWGTSRRLAAERPELVVLHTVREGAHGAMWNA 361

Query: 827 NTPEINHLMKQII 839
           +  E    +++ +
Sbjct: 362 DPEEYEETLRRFL 374


>gi|328955224|ref|YP_004372557.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
 gi|328455548|gb|AEB06742.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
          Length = 1215

 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 43/165 (26%), Gaps = 23/165 (13%)

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
            +   D T  G+ FH     LI+   +         + +              +    R  
Sbjct: 1038 EPPVDPTALGSAFHAAAQWLIEYGADTVPVRRLDALCRAW-----------GLSASPRER 1086

Query: 860  FHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAIESIGIHLT------GFADRI--DLLKS 910
                   +   + + +      +   +    +               G  D +  D  + 
Sbjct: 1087 LEAALARWQHSDVRRELLCWPVVRAEVAF-FSSGMAEARERFGAYAQGAIDALGTDPTRP 1145

Query: 911  GFVDITDYKTG--DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953
                + DYKTG       +  Q   + Q  + A  L+    + + 
Sbjct: 1146 DRALVIDYKTGGSAAESSDELQATHELQARVYADVLRRSGIAHVT 1190


>gi|261863843|gb|ACY01401.1| AT-less polyketide synthase [Streptomyces amphibiosporus]
          Length = 8360

 Score = 39.5 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 70/780 (8%), Positives = 161/780 (20%), Gaps = 48/780 (6%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
             LARL+L    +      + +   P  L  +    + L  +    +            L 
Sbjct: 2156 LLARLVLPATVETGTQATETFGLHPAMLDSAIQAVVGLYGDETGALGERPDAPALPFALD 2215

Query: 171  A---LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
                L      MW  L         +       +++     G     +R  A   +    
Sbjct: 2216 TADVLAPTTDRMWAHLRWADGYAPGEAGEVTKTDIDLYDDAGRLCVRLRGYASRRVTPAA 2275

Query: 228  GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
                 A   G+  A A     +A   +      G     P A    +             
Sbjct: 2276 TGSATAAPAGTDDADAPRAQLLAPVWDAQPHADGPRSPEPGAHVVLLGGTPEERDGLRRL 2335

Query: 288  YSTHP-----QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
             +        +++ A  L  L     +        +     S              ++  
Sbjct: 2336 VADVTVVEPERHASAGELAALLPTGAEHVVWLAPRDASPAASSAEGPDGALAVFRLVKAL 2395

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402
                     +           A   +   +        +          +  +    R  
Sbjct: 2396 LADGADARELS--------FTAVTRQARLLPGDADCDPAHAGVHGLLGTLAKEYPHWRVR 2447

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
              ++ R             +                +    +A+        +       
Sbjct: 2448 GADIERDVSVPWPELLSLPADPRGEVSARRHGEWYRQRLLEVALDASGAASFSAGSQAPN 2507

Query: 463  YLSRAKNAL-ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
              +    A     ALR        +     +           H             E   
Sbjct: 2508 PQAPNSQASGARSALREPGGVVVAIGGAGGIGTVWTEHMMRRHGARVVWIGRRPYDEEIA 2567

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT----VTCLQNVCLDEHRKLPNLWF 577
               D +  C       + +              +         L    +   + L  +  
Sbjct: 2568 ARQDRLAACGPRPEYVRADATDARALRRAVAEIERRHGPVRGVLHTAIVLGDQSLARMDE 2627

Query: 578  EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
                 T  +  +  +          +E++   + +        +   ++          R
Sbjct: 2628 AAFRTTYEAKAAVSVNMADAFAGQPLEFVAFFSSMQAFFKAPGQANYAAGCTFSDAWAER 2687

Query: 638  LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L       +  ++ G W           R   + L L + E   G AA D  +A+  R L
Sbjct: 2688 LSTALDCPVKVMSWGYWAGVGIVTADGYRQRMAQLGLGSIEPDEGMAAFDALLASPYRQL 2747

Query: 698  IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
               ++                   + G    D L++           L       + +  
Sbjct: 2748 ALLKATDS--------------RSIDGIYGDDELRQLPPAAPALADTLRTDRPDRNAEIR 2793

Query: 758  KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817
            +     +        + ++              L L          +    G +      
Sbjct: 2794 RLREQADGHAGVMYDALVRV------TWALLTSLGLFRDGRAATAAEWRAVGGI-----E 2842

Query: 818  ELIKKRINKNTP--EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
            E  ++              +++  +  +                + +    +L  E K  
Sbjct: 2843 ERYQRWTEHTLEVLTAAGRLRRAGEDRYAAVAPGAVPAEDAWAEWDRAREVWLADEAKQA 2902


>gi|239980332|ref|ZP_04702856.1| putative linear pentadecapeptide gramicidin synthetase LgrB
            [Streptomyces albus J1074]
          Length = 7693

 Score = 39.5 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 90/789 (11%), Positives = 173/789 (21%), Gaps = 62/789 (7%)

Query: 139  PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
            P  PA    L      +       E  WE +     +  G         ++  +  +   
Sbjct: 412  PAEPAAFEGLRVERGQLARASSPYEVSWEFVEGAAQDGGGPLHCA----IEYRTALFDAA 467

Query: 199  LVELNASSPVGYQIA-----LMRAEAEHLMKGTKGPIIIAGSTGSIPATA-------RLM 246
             VE           A      +R +    + G +   ++A  +G+    A       R  
Sbjct: 468  TVERMGRHFAALARAVVTDPAVRLDEAAPVAGAELAELLADGSGADRPEAAEGSIPGRFA 527

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
               A  P+   +  G +     A+     + + ++ +S           L +  D +   
Sbjct: 528  EQAARTPDAPALTSGDEQLTYAALDARANQLAHHLIASGVRPEDPVAVCLPRTTDLVVAA 587

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
               +K  G                 LP +       +     +         V       
Sbjct: 588  LAVLKAGGVHLPVDPA---------LPRERVAWMLAESRVRTVVTTDALAGLVTAPGTPG 638

Query: 367  EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
            +   A+     +R       + +  +      A  V             S G P +    
Sbjct: 639  DEAPAVVRVDLVRERTAALPRTAPQVALTGAHAAYVIHT--------SGSTGRPKAVLGL 690

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
               L S              A ++      F      L         V L  ++   D  
Sbjct: 691  HGGLLSRWAWFADRYPEERDAVVLAKSSVGFLDSVTELLGTLVHGGHVVLAPDEAVKDPF 750

Query: 487  DLKSLVLDRIATQKNNTHVPHW--QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
             L  LV      +                          V        PL      K   
Sbjct: 751  ALAELVRRHRVRRLTLVPSLLAVLLDETDPAALASCTTWVSSGEPLSRPLAARFRAKLPH 810

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               L++   ++++   L         ++    +    + L +  + +            E
Sbjct: 811  ARLLNLYGSSEISADSLAWEADGGDVRVGTPLWNTHVRVLDARLAPVPAGVPG------E 864

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
                   +  G T +P       +       +RL     L+    +  +     A +   
Sbjct: 865  LYVAGAGVARGYTNRPGHTAERFVADPFGSGARLFRTGDLVRWAADGTLEHLGRADDQVK 924

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
             R  + +     A         D       R    T ++          R L     L  
Sbjct: 925  VRGFRIEPGEIEAALRAHPDVADRGRRRPARTAKGTAAIAGIPGGRPRGRTLPTARDLRD 984

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
             D                  L  T      +R  P P         + +   Q       
Sbjct: 985  RDGRSLPDYMVPAAFVALDALPATASGKLDRRALPTPVWSESAAYVAPAPGTQTALAAVW 1044

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLF----------HNIITELIKKRINKNTPEINHL 834
                 + ++     F      +   T            H  + +L       +  E    
Sbjct: 1045 AEVLGVERVGAEDDFFALGGHSLLATRVISRVRTGLGAHLAVRDLFDAPRLADLAEAVDR 1104

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
             +         + L P           ++  SF +                     +   
Sbjct: 1105 ARSAAPEDGPAQPLLPVPREG------RLPLSFAQERLWFLDDFAPGATEYHVSGTL--- 1155

Query: 895  GIHLTGFAD 903
               LTG  D
Sbjct: 1156 --RLTGTVD 1162


>gi|182440532|ref|YP_001828251.1| putative NRPS [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178469048|dbj|BAG23568.1| putative NRPS [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 2442

 Score = 39.5 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 79/693 (11%), Positives = 158/693 (22%), Gaps = 57/693 (8%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
            A  + F      +LL   L    R     P  +A V                        
Sbjct: 1043 AADAGFLDLGGHSLLAARLAARVREHFAVPFSIADVF------------------RHTTP 1084

Query: 72   STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            + +   +++             +      P     QRL  L RL                
Sbjct: 1085 AALAAQVRARSGAAIASAPLSPVPRTGPLPLSPAQQRLWFLHRL-------EGPSPTYNI 1137

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEEK--KWEDLHALKNEKYGMWWLLAADFLK 189
            P            A+ LA  LAD+++  ET        D     +               
Sbjct: 1138 PLVLSVNGPLDREALQLA--LADLVERHETLRTVYPPTDNGFGADGDGTPHQ-------L 1188

Query: 190  IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249
            I           L+ + P       +R   +   +     ++ +           L    
Sbjct: 1189 ILPPGHESARPVLHLAQPGSDLTEAVRHCFDLAAEPPLRTVLFSDGPDHHTLLLLLHHIA 1248

Query: 250  ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
             +  +   +   L       + + + E +          +   Q  L    +   +    
Sbjct: 1249 GDGASTTPLARDLATAYTGRLADRVPEFAPLSGQYVDHAA-RLQLLLGTPAEPTALAEAQ 1307

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
            +         +  +  + +    PP  +   +T          +          A     
Sbjct: 1308 LAHWREALAGLPDQLELPADRPRPPVATSAGDTVPFALDATAHEALRRLARAHGATVFMT 1367

Query: 370  EAISIAIALRMSLDENKKKSALITADRNLARRVKLEL---------TRFGINIDISAGIP 420
                +A  L            L T            L          R   + D + G  
Sbjct: 1368 VQAGLAALLTRHG--CGTDIPLGTPVAGRDDDATAGLVGFFTNTVVLRTDTSGDPAFGEL 1425

Query: 421  LSTTLHSSILTSLLNAIFKLNDFMAI---ATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            L     +++     +A+   +   A+    +L +HPL +     + L+     L      
Sbjct: 1426 LDRVRATTLAAYEHDALPFDHLVEALNPPRSLARHPLFQTMLAWQSLADGPVPLGPETTA 1485

Query: 478  GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                         L L+              + R    D+  A  L D + +    L   
Sbjct: 1486 RLTAVPSGTAKFDLTLN-AGELPGGGIGGFLEFRTDLFDRSTAQALADRLSRL---LAAA 1541

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                 +  G L +    ++    +    +D  R +P    E           +   +   
Sbjct: 1542 AEQPGTPLGLLPVLGDEEVHRAVVGANGVDGDRPVPLTLAEVYAVAARRHPERTAVSCGG 1601

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
            +     E       L      +     S     L      +     + L G        +
Sbjct: 1602 VSLTYAELSSRAQSLARLLAARRIGPGSIVALALPRSTDLVAGLLAVSLAGAAYLPMDPD 1661

Query: 658  TAKNPF--LSRVMQSDLNLKTAEKYIGQAAHDF 688
               +    +    +    +  A       AH+ 
Sbjct: 1662 YPADRLAYMLDDARPAALITDAATAERLPAHEL 1694


>gi|322491824|emb|CBZ27097.1| hypothetical protein, unknown function [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 3925

 Score = 39.5 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 58/777 (7%), Positives = 181/777 (23%), Gaps = 12/777 (1%)

Query: 111  ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170
            E+   +     +    I++L  +  ++     A     A+   D++D+  + E       
Sbjct: 2285 EICTALEKPVEEAALEIRELREQLAITQLRREALDAECAELEQDLLDVESSREANVWKRR 2344

Query: 171  ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230
                ++        A+   +  +         +  +    + A M    E L +  +   
Sbjct: 2345 EALEDRGISHSAKDAEMADLREQLREAEERARDVEAQQSDRDAEMADLREQLREAEERAR 2404

Query: 231  IIAGSTGSIPATARLMS---TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
             +        A    +      A      +     D     A       ++         
Sbjct: 2405 DVEAQQSDRDAEVADLREQLREAEERARDVEAQQSDRDAEMADLREQLREAEERARDVEA 2464

Query: 288  YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
              +     +A L + L    E  + +    ++       + +     +           +
Sbjct: 2465 QQSDRDAEVADLREQLREAEERARDVEAQQSDRDAEVADLREQLREAEERARDVEAQQSD 2524

Query: 348  KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELT 407
            +   +      +   E      EA        M+    + + A   A    A++   +  
Sbjct: 2525 RDAEMADLREQLREGEERARDVEAQQSDRDAEMADLREQLREAEERARDVEAQQSDRDAE 2584

Query: 408  RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
               +   +  G   +  + +                       +   A+    +  ++  
Sbjct: 2585 MADLREQLREGEERARDVEAQQSDRDAEMADLREQLREAEERARDVEAQQSDRDAEMADL 2644

Query: 468  KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
            +  L     R         D  + + D     +              +       L + +
Sbjct: 2645 REQLREAEERARDVEAQQSDRDAEMADLREQLREAEERARDVEAQQSDRDAEVADLREQL 2704

Query: 528  LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
             +        +  ++       ++D  +      +     E ++        + +     
Sbjct: 2705 REAEERARDVEAQQSDRDAE--MADLREQLREAEERARDVEAQQSDRDAEVADLREQLRE 2762

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
              +        +++    +  +   +     + +  ++        +             
Sbjct: 2763 AEERARDVEAQQSDRDVEMADLREQLREGEERARDVEAQQSDRDAEMADLREQLREAEER 2822

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707
             ++      +        R    +   +  +    Q+  D          + + ++RE  
Sbjct: 2823 AMDVEAQQSDRDAEVADLREQLREAEERARDVEAQQSDRD--AEIERVKELLSGAMREAA 2880

Query: 708  IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767
              +     L    V         L+++          LD    +   +       +  + 
Sbjct: 2881 ASSEICTAL-EKQVEEAALEIRELREQLAVTQVRREALDAECGELEQQLRDVQSSVLERR 2939

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827
                   I     D      R  L+         +  ++DR       + +L ++     
Sbjct: 2940 EAVEDLSISHSAKDAEVADLREQLREAEERARDVEAQQSDR----DAEMADLREQLREAE 2995

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
                +   +Q        +      +   R    +   S  + E        +    
Sbjct: 2996 ERARDVEAQQSDRDAEMADLREQLREAEERARDVEAQQSDRDAEMADLREQLREAAE 3052


>gi|291452197|ref|ZP_06591587.1| nonribosomal peptide synthetase [Streptomyces albus J1074]
 gi|291355146|gb|EFE82048.1| nonribosomal peptide synthetase [Streptomyces albus J1074]
          Length = 7718

 Score = 39.5 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 90/789 (11%), Positives = 173/789 (21%), Gaps = 62/789 (7%)

Query: 139  PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
            P  PA    L      +       E  WE +     +  G         ++  +  +   
Sbjct: 437  PAEPAAFEGLRVERGQLARASSPYEVSWEFVEGAAQDGGGPLHCA----IEYRTALFDAA 492

Query: 199  LVELNASSPVGYQIA-----LMRAEAEHLMKGTKGPIIIAGSTGSIPATA-------RLM 246
             VE           A      +R +    + G +   ++A  +G+    A       R  
Sbjct: 493  TVERMGRHFAALARAVVTDPAVRLDEAAPVAGAELAELLADGSGADRPEAAEGSIPGRFA 552

Query: 247  STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
               A  P+   +  G +     A+     + + ++ +S           L +  D +   
Sbjct: 553  EQAARTPDAPALTSGDEQLTYAALDARANQLAHHLIASGVRPEDPVAVCLPRTTDLVVAA 612

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
               +K  G                 LP +       +     +         V       
Sbjct: 613  LAVLKAGGVHLPVDPA---------LPRERVAWMLAESRVRTVVTTDALAGLVTAPGTPG 663

Query: 367  EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
            +   A+     +R       + +  +      A  V             S G P +    
Sbjct: 664  DEAPAVVRVDLVRERTAALPRTAPQVALTGAHAAYVIHT--------SGSTGRPKAVLGL 715

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
               L S              A ++      F      L         V L  ++   D  
Sbjct: 716  HGGLLSRWAWFADRYPEERDAVVLAKSSVGFLDSVTELLGTLVHGGHVVLAPDEAVKDPF 775

Query: 487  DLKSLVLDRIATQKNNTHVPHW--QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
             L  LV      +                          V        PL      K   
Sbjct: 776  ALAELVRRHRVRRLTLVPSLLAVLLDETDPAALASCTTWVSSGEPLSRPLAARFRAKLPH 835

Query: 545  CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               L++   ++++   L         ++    +    + L +  + +            E
Sbjct: 836  ARLLNLYGSSEISADSLAWEADGGDVRVGTPLWNTHVRVLDARLAPVPAGVPG------E 889

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664
                   +  G T +P       +       +RL     L+    +  +     A +   
Sbjct: 890  LYVAGAGVARGYTNRPGHTAERFVADPFGSGARLFRTGDLVRWAADGTLEHLGRADDQVK 949

Query: 665  SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724
             R  + +     A         D       R    T ++          R L     L  
Sbjct: 950  VRGFRIEPGEIEAALRAHPDVADRGRRRPARTAKGTAAIAGIPGGRPRGRTLPTARDLRD 1009

Query: 725  TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784
             D                  L  T      +R  P P         + +   Q       
Sbjct: 1010 RDGRSLPDYMVPAAFVALDALPATASGKLDRRALPTPVWSESAAYVAPAPGTQTALAAVW 1069

Query: 785  VYARRILKLDFIPHFKKDPDRTDRGTLF----------HNIITELIKKRINKNTPEINHL 834
                 + ++     F      +   T            H  + +L       +  E    
Sbjct: 1070 AEVLGVERVGAEDDFFALGGHSLLATRVISRVRTGLGAHLAVRDLFDAPRLADLAEAVDR 1129

Query: 835  MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894
             +         + L P           ++  SF +                     +   
Sbjct: 1130 ARSAAPEDGPAQPLLPVPREG------RLPLSFAQERLWFLDDFAPGATEYHVSGTL--- 1180

Query: 895  GIHLTGFAD 903
               LTG  D
Sbjct: 1181 --RLTGTVD 1187


>gi|40445348|ref|NP_954808.1| TraA protein [Gordonia westfalica]
 gi|40217378|emb|CAE09129.1| putative TraA protein [Gordonia westfalica]
          Length = 2072

 Score = 39.5 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 37/366 (10%), Positives = 81/366 (22%), Gaps = 11/366 (3%)

Query: 489  KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548
            +        T + +   P  +   +    + A+            L   + + ++     
Sbjct: 1045 RDGAQQSATTAQRDAVDPFLRLSRAAAAYDHALGAAAEHTLGAKALRDLEHDADALYSTH 1104

Query: 549  SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608
            + +    LT              L     +   +  +++  + + T +   A     +D 
Sbjct: 1105 TGTPAGTLTACAAWPTLRTHLATLALGGDDPIARLQAAITHRELATAADPAAVLDWRLDP 1164

Query: 609  ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668
              +   G    P + +    F        L   D L +  L   V  + TA +   + + 
Sbjct: 1165 TQQHSAGGGPLPWLPRVPAGFDDPQWAPYLTRRDAL-VTDLAAAVTERATAWDATTAPMW 1223

Query: 669  QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
               L L   ++     A    +    R +  T        P   +   +   +    D  
Sbjct: 1224 ARPLLLADPDRGRELVAE-LAVFRAARGVDDTDRRPAGPRPDSIALARRHAALTERADAL 1282

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                     Y D  R LD       Y          A         + +           
Sbjct: 1283 ITTTAEAARYADLARDLDPHLLADPYWPELADHLSLAARAGLDVDALARDA--------- 1333

Query: 789  RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
                                G L                   +  ++          +  
Sbjct: 1334 LADNPLPTEMPAAALWWRLSGQLAPAAAEATNTGLRPDWADALVGIVGDRAAEAILTDRA 1393

Query: 849  PPHIDI 854
             P +  
Sbjct: 1394 WPALVA 1399


>gi|29123003|gb|AAO65807.1|AF440781_26 monensin polyketide synthase module 10 [Streptomyces cinnamonensis]
          Length = 1641

 Score = 39.5 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 58/643 (9%), Positives = 142/643 (22%), Gaps = 41/643 (6%)

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
            +  +     + + D           +    +  A  +  ++        +      L   
Sbjct: 784  VAFYSTVTAERLTDTTALDTDYWVTNLRQPVRFADTIEALLADGYRLFIEASAHPVLGLG 843

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPI 230
                      +   I +        +   ++ +    A                    P 
Sbjct: 844  M-----EETIEQADIPATVVPTLRRDHGDTTQLTRAAAHAFTAGAPVDWRRWFPADPTPR 898

Query: 231  IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
             +   T +       +   A+       + G        +W+ + E    + +       
Sbjct: 899  TVDLPTYAFQHQHYWLERSASASGA---VSGEQSAAEAQLWHAVEELDLGLLAETLGSEE 955

Query: 291  HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
              + ++  L   L + +   +R  + +     R  V  K        ++    +L   +P
Sbjct: 956  GSEEAVRALEPALPVLKGWRRRHQDQATIDSWRYRVTWKQRSDGPAPELGGDWLLF--VP 1013

Query: 351  NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
              +     V           A ++ +    +    +++ A +           L L    
Sbjct: 1014 ADKAEHPAVRATAEALSEHGAAAVRLHPVETGRAGRQELAAVDTAGLAGIVNLLALDEEP 1073

Query: 411  IN--IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
                  + AG+  +T L  ++  +   A        A++T    PL        +     
Sbjct: 1074 HPEHPAVPAGLAATTALLQALGDNGTTAPLHTVTQGAVSTGATDPLTHPLQAHVWGLGRV 1133

Query: 469  NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
             ALE   L            +  +    A             R +          V  I 
Sbjct: 1134 AALEHPRLWAGLVDLPARIDRHTLPRLAAALLPQDDEDQTAVRPTGIHHRRLTHAVGSIQ 1193

Query: 529  QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
              +    T++    +     +      L     +      H            + L++  
Sbjct: 1194 NPVHSEATWRPRGTTLITGGTGGIGAVLARWLARQGAPRLHLTSRRGPDAPGARELAAEL 1253

Query: 589  SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
              +    +    +                V    + S  +  +              +  
Sbjct: 1254 DGLGTAVTITACD----------------VSDPRQLSGLIDDMPAEHPLTAVIHAAGMTD 1297

Query: 649  LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
            L              L     +  NL    + +  +A  F M +    +  +        
Sbjct: 1298 LTAIGDLTTARLGEVLGSKSDAAWNLHELTRDLDLSA--FVMFSSGAGVWGSGQQGAYGA 1355

Query: 709  PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
                      L  L        L      +  W         +
Sbjct: 1356 AN------HFLDALAEHRRAQGLPATSIAWGPWAEAGMSADPE 1392


>gi|171915121|ref|ZP_02930591.1| TPR domain protein [Verrucomicrobium spinosum DSM 4136]
          Length = 1820

 Score = 39.5 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 94/834 (11%), Positives = 214/834 (25%), Gaps = 43/834 (5%)

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
                +     +    +  + RL   ARL L   ++       +  +     P       W
Sbjct: 486  HSRDEACSILDQMTALGPLHRLTLFARLSLAGFDRNTQEHHQVLLDMLTQYPDDMRLLQW 545

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
              ++L ++    E        +  ++         LA +  +        R +   A   
Sbjct: 546  HVQSLREL-GRPEERLLLLRRIITMEQAHPSFLRELAVELSEDYRHRHETRRLLWWAHRC 604

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                 A++ A A    +  +    +        A +  +   +     A V         
Sbjct: 605  SPVDSAVLSALAVWHWREPRRQEALD-FFRFAAALSDKVEAWSVQWFNACVALNRSEEAL 663

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
              +           +    T +   +  L    + L +  E V+R  +    +   S + 
Sbjct: 664  AWLRQRYQAYGDQSSGPALTLAVCLE-RLCLTEESLAVVEEAVRRRPDDGELLVHASRLA 722

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD-ENK 386
            ++     +          +       +  + +A  E D+ R+ AI   I     L  +  
Sbjct: 723  ARFGKMYEAQLRLQRARQKCSHGQWLRADAALASREGDHARQLAIWREILQTEPLAMDAH 782

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446
            +    +             L             P    L+ + +T L     +     A+
Sbjct: 783  QSMVALLELVQGTAAAGAHLQEACTRF------PQHYELNQTYITWLREHAPEDARSPAL 836

Query: 447  ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506
            A L   P       +      + A    A  G + +         +  R         + 
Sbjct: 837  AMLAHFP-------DDAWLHREIAHICQATGGFEEAMTHATAAINLAPRAPQSLATMAMV 889

Query: 507  HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566
                  + E +E     +   +   T L+      N +       D+ +  +        
Sbjct: 890  LQAMSRTAEAEEHCRRALQEDINFGTALIQLLECTNGSTQRDGALDFIRHEMIVQVLNGE 949

Query: 567  DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626
              H      +   E + L +   ++ +    +       I       + E      E++S
Sbjct: 950  TLHVYRVLAYGLIEPRELMAHLREVWQARPDLWEAWSVLISQTQDAGELEEAARLAEEAS 1009

Query: 627  TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
              F L     R L    + L G NE                 Q+  +L   ++ +GQA  
Sbjct: 1010 RRFPLLPGAWRDLG-QIMRLQGRNEESLRAFRRTTELNPDWDQAWQDLAQLQEDLGQAED 1068

Query: 687  DFEMANGT---------RHLIYTRSLRENNIPTIASRWLQR-LLVLGGTDFFDNLKKRGQ 736
                               ++    L            ++  L    G      +     
Sbjct: 1069 ALHTLRTALKRMPRENNLRMLLAIFLWRAGERQEPWELVESCLRDDPGLQRAWGILSAWA 1128

Query: 737  CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ-------------LINDPY 783
              L   + L+   +    + P          R      +++              + + Y
Sbjct: 1129 PLLHRQQSLEDLARSVTREHPAQARLWMMLARVLRPEAVEERLQAVDHALAIRPRLAEAY 1188

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNII--TELIKKRINKNTPEINHLMKQIIDS 841
               A  + +       +K       GT     +   E     +     E   ++++++  
Sbjct: 1189 DFKAILLSEQGKFEEARKALWSGPWGTDRPAQLAGREAWLLVLEGKPQEGMIVLRKVLKK 1248

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895
            H +       +  +  H+   ++      E    S  +    +  A + + + G
Sbjct: 1249 HRDFHWGWERLYELAEHVEQPLAMREAARELLRLSPRDPDACSRAALVELGAGG 1302


>gi|194292703|ref|YP_002008610.1| hypothetical protein RALTA_B1979 [Cupriavidus taiwanensis LMG
           19424]
 gi|193226607|emb|CAQ72558.1| conserved Hypothetical protein; putative Protein prenyltransferase;
           putative membrane protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 1359

 Score = 39.5 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 63/756 (8%), Positives = 168/756 (22%), Gaps = 23/756 (3%)

Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
            ++  + I +    L   I+     +  + P +      L   L  ++D          D
Sbjct: 98  RMQAVQGIDLSGQVLRTRIEIAQQRAWAAQPGTAEREQNL-VALRSLLDQAAGRRWTLSD 156

Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR-AEAEHLMKGTK 227
           L AL                  A + +   L   +  +   +   L   A A    +   
Sbjct: 157 LQALAT-------QARQAGADAAMRRFYTALASQDRQNAAFWNRQLADMAIAGGDYRDAA 209

Query: 228 GPIIIAGSTGSIPATAR--LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
             +    +  +  A  R   +  V    +G ++   L              +     +  
Sbjct: 210 NALFAQQAAATTLAERRALFLKAVQTLQSGNLLDEALAQAERHGGTLLDDPEVLRYLTRL 269

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
              +  P+ +   +   L +              +      + +        +     + 
Sbjct: 270 ALAANKPEQASRYVERLLKVSARLRDAGHADPAALAAHEAEVRRIAASQPWRERGLVFLD 329

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405
             +   +++  +    +     R  A   A A       N     L       A ++   
Sbjct: 330 GPRGLALREALAASGQLGV--RRIAAQEAAPAQPDDTKFNADDYELAYRVFLAAGKLDQA 387

Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
                  +      P+     + +          L  ++  A       A          
Sbjct: 388 QRVAETAVRRLPAEPVWRERLAQVAEWNRQPAVALKSWLDYARATNDERAW---DAVMRL 444

Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
               + +   L   ++     DLK++     A ++        +          A  +++
Sbjct: 445 APGLSDDRAYLAALRHRAGGADLKTVDEVVAAYERLGEPEEAMRFLEGLSRGPKARDIME 504

Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585
                       +                      L N+     + +  L      +  +
Sbjct: 505 RHAALAERAGNDERAFQLYTQLQQRFGPRPAYALKLANLLYVRGKLVQALDAMLPARAAA 564

Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
                +        A   +  D++        +     + +    L    +R    D + 
Sbjct: 565 GPRDLLFWRTFSELARLNQRDDLLQDGYRHLMMAAAQTRDAHCQQLPEGPARNDCMDEVR 624

Query: 646 LGGLNEGVWPKN--TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
                +                R+ ++D     +   +  A + +  A+  R +      
Sbjct: 625 ATQEADFSNLIAYYDRIPIDAGRIAEADWRRGASPASLELALYYYTRAHAYRRIERLLQD 684

Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
                   A +  + L+           +++    L     L     +            
Sbjct: 685 MSAEQRRAAWQSSRFLMRRAEYYRVTGQREQALADLRHAAGLPDADSETLAALLWTLVDQ 744

Query: 764 -EAQPRTYSFSEIKQLINDPY----AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                       ++    D      A  A  +   D            D  +     +  
Sbjct: 745 GSDIEVRAVMRRLQDQAEDNPDLWGAFAAGHMRFHDGRAALHYLRKLNDGKSADPLWLGL 804

Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854
           L          ++   +++      ++         
Sbjct: 805 LADAYDAVGQTDMAWRVRRQAWVDLQRGWARRGTGA 840


>gi|238024562|ref|YP_002908794.1| hypothetical protein bglu_2g11690 [Burkholderia glumae BGR1]
 gi|237879227|gb|ACR31559.1| Tetratricopeptide TPR_2 [Burkholderia glumae BGR1]
          Length = 1404

 Score = 39.5 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 59/586 (10%), Positives = 114/586 (19%), Gaps = 14/586 (2%)

Query: 118 IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN--- 174
             R     I   L   +   L           + L  ++          E L AL     
Sbjct: 99  AARQNALAIRISLAQRALYGLKPGDPARAARIRELDALLHDAVDRPWDVEALTALARQAR 158

Query: 175 -----EKYGMWWLLAADFLKIASKYWTERLV--ELNASSPVGYQIALMRAEAEHLMKGTK 227
                   G ++ L A      +  W   L    L          A    +A    +  +
Sbjct: 159 GLGDNALAGRYYALLAQRDTAHADAWLAELAATRLGGHDYRQAADAWFAVQARATTRAAR 218

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH-IPTAIWNTITEKSTNITSSNT 286
               IAG            +  A   +   +    D     +++                
Sbjct: 219 RDAFIAGVKALQSGNDMAGAMAAAQAHLGELGDDPDTLRFLSSVALAAGRPDLAAQYVKR 278

Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346
                     +     L +          +             +  P    D R   +  
Sbjct: 279 LLQVLGDAGRSGAAPRLGLAAWHGAAGEGLDPRAAPAGAARLGAGRPVVQRDARGVWLRA 338

Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406
             +P   +    +      +    A   A  +R+        + +               
Sbjct: 339 AWLPAAARRGPALPGAALRDAAVRASDAARLVRVVRIAASGDAVVAPPSPISPAAAISSA 398

Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
            R G          L      S  T  + AI   +   A       P A         + 
Sbjct: 399 PRAGTPAAARDAARLIRVPVPSSTTIAMGAISGSDAAAAAPGAPGAPGAAASAARAPAAD 458

Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
           A       A         +        +R+A Q           R   E          H
Sbjct: 459 APAQKAGAADFELAYRVFLAAGDVASAERVAQQALARDPGSDAWR---ERLAQVAEWNHH 515

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
               +   +    ++        ++            + L  H+   N    +      +
Sbjct: 516 PDVALANYLALARSRGDARAWQQVARLAPGLNDQRALLALTLHQADANPGDLKRLDAAVA 575

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            +    +    ++     +   + R            K      L T      ++     
Sbjct: 576 AYESNADPDGALRFLQTRFSGPLGRQARERYATEAERKGDDELALATWRGLERDYGPNPA 635

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
             L          +       M       T         +    A 
Sbjct: 636 YALKIATMLYTRTQFAAALAAMNDAKRGATPADEDFWRFYALLGAT 681


>gi|312195223|ref|YP_004015284.1| hypothetical protein FraEuI1c_1347 [Frankia sp. EuI1c]
 gi|311226559|gb|ADP79414.1| YD repeat-containing protein [Frankia sp. EuI1c]
          Length = 1572

 Score = 39.5 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 57/569 (10%), Positives = 120/569 (21%), Gaps = 36/569 (6%)

Query: 233  AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
            AG T     T   + TV   P+G+ +  G D  +                ++        
Sbjct: 859  AGFTTRTEYTHFDLPTVRTSPDGSRMAFGYDTEL-----------RLTSVTNPQGLRWSY 907

Query: 293  QYSLA-KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351
            +Y  A +L+   D     ++   + + ++ GR+    ++      S             +
Sbjct: 908  EYDAAGQLVAETDFDGRTIRYDYDAAGQLVGRTNGAGETVTFARDSGGDIVARSGPDGTS 967

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411
                 +   ++ A +   E +     L     E      L +    L  R +       I
Sbjct: 968  TFAYDATGRVVRATSPDAEVLVERDLLGRVTAEICDGRRLASRYDPLGHRTRRTTPSGAI 1027

Query: 412  NID--ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
            +      AG PL+      +LT   +A         +   +                   
Sbjct: 1028 SSWEHDPAGRPLALRTAGQLLTFTHDAAGH-----ELERHLVRDAPGGAEVVLTQRWDAR 1082

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                                 L     A          +         E   LL      
Sbjct: 1083 DQLRSQALVVGPGPAGPGPAGLGQPAGAGTARLLQRRDFAYTSDGYLAETDDLLAGVHHF 1142

Query: 530  CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
             +  +      +          D             +D            +G  +     
Sbjct: 1143 ELDAMRRVTAVRGGAWAERYAYDPAGNLTHAAWPASVDPDTADEQGERGYDGTLIRQAGK 1202

Query: 590  KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
               E  +  +      +       D        +  + +            +        
Sbjct: 1203 TRYEHDAQGRIILRRQLRPAGETDDWRYTWDADDHLTAVTTPD-----GTVWQYRYDAFG 1257

Query: 650  NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
                  + ++    + ++      L  AE++    A   E A  +   + T     +  P
Sbjct: 1258 RRIAKQRLSSAGDIVEQITFVWDGLVLAEQHHTVQAEPGETAGPSTTTVTTW----DWEP 1313

Query: 710  TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP--------KPFP 761
                   Q      G        +       W     +         P        +   
Sbjct: 1314 NTFRPLTQSERRPTGDQASSANSRPDDPDQAWYDTQFHAIVTDLIGTPTELVDPDGRLAW 1373

Query: 762  PLEAQPRTYSFSEIKQLINDPYAVYARRI 790
               A     S        + P     +  
Sbjct: 1374 HSRATLWGVSPPSTPTTTDCPLRFPGQYH 1402


>gi|260432101|ref|ZP_05786072.1| ATP-dependent DNA helicase RecQ [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415929|gb|EEX09188.1| ATP-dependent DNA helicase RecQ [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 679

 Score = 39.5 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 39/426 (9%), Positives = 105/426 (24%), Gaps = 26/426 (6%)

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
            +F   +  +  A  A  +   + +       DL   +                   L+ 
Sbjct: 271 TRFAREDGLIVVATVAFGMGIDKPDIRWVAHADLPKSIEAYYQEIGRAGRDGGPAETLTL 330

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
              +   L    I + + P      +       L +++        L     +E +    
Sbjct: 331 FGPDDIRLRRSQIDEGLAPPERRAADHARLNALLGLAEALHCRRQTLLGYFGEEAQPCGK 390

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWI--DIITRLIDGETVKPKIEKSSTLFILG 632
               +    L    + +    S I      +    +I  L+  ET K +  +   L   G
Sbjct: 391 CDLCDSPPELFDGTTPVRMALSAILRTEEWFGSGHLIDILLGNETDKIRARRHDELPTYG 450

Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692
             +         I   +      +   +     R+ ++   +   E  I         A 
Sbjct: 451 IGKDWSRPQWQAIFRQMMGHDLVRPDPERHGALRMTEAAKPILKGEAQITLRKDTLRKAT 510

Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
               +    S  +               +L                  +    D T    
Sbjct: 511 RRPAVKMMVSEEDA-------------PLLSALKAKRRALAEAARVPAYVIFPDRT---- 553

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
             +  +  P    +         K+L             +   +   ++     ++G ++
Sbjct: 554 LIEMAEKRPMTLDEMARIGGVGAKKLDRYGDTFLEVIAGEAQAVHPARRKLAGREQGNIY 613

Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH-IDIIWR----HLFHKISHSF 867
             ++   ++ ++ +    I+  +        +   + P     + +        + + +F
Sbjct: 614 DRLLE--VQAQLARGPDGIDKPLSCSASQLAKVAQMRPGDERALEQILGDRRAERFAAAF 671

Query: 868 LEHEEK 873
           L+    
Sbjct: 672 LDVLRA 677


>gi|168702395|ref|ZP_02734672.1| TPR domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 1992

 Score = 39.5 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 64/713 (8%), Positives = 128/713 (17%), Gaps = 38/713 (5%)

Query: 85   VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144
              E   A  L    L  P    +  L L   + +                          
Sbjct: 582  AAEPMVAQTLAQALLPDPRRQYEAALLLRHSVQVRPTAAAGYYLLASQWWEERRFDEATE 641

Query: 145  AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
                A  L +  D       +         E   ++   A                 L  
Sbjct: 642  LYRFACTLEEREDQFADAYFRAARATEQVPEAIRLFQQRAGRAAVPVPAATRALYHALLD 701

Query: 205  SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM-------------STVAN 251
                    A +      L      P +        PA  R +             ++   
Sbjct: 702  RDEPQQAAAAVDQAIRKLQDAATAPAVADSKDTPGPARERALALGELLLFRAECRASADR 761

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
              +  + L      +P   W+    + +           H    +      L+  R    
Sbjct: 762  FADADVDLTAAKPLVPAGAWHKAAARVSRTRPDLAAAGAHYLEVVKLDPLPLEAHRTLTA 821

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA----LIEADNE 367
             L         R+ +       P    +                   +     +   D  
Sbjct: 822  LLAETDGRGAARAHLTQACQRFPHYYPLLKFRAEFLSGDPEGDAERALRDLLDVCPDDAW 881

Query: 368  REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
                 ++  A R  LDE    +                L +     D +A          
Sbjct: 882  ALRQRALVCADRKRLDEALAHAVRAGELEPNHVWYHSVLAQVHKRADRTA---------- 931

Query: 428  SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
                    AI                L +     +    A   +E    R       ++ 
Sbjct: 932  ----EAAEAIRAGLRLNIDQEPQIAELVQLARGRREKRDALEFIEAELRRQPHTGEGLIA 987

Query: 488  LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
               +         +          L +   +   L           L        +    
Sbjct: 988  FVGVSHHVFQGNSDPEDHTRLLETLEQILDDRPDLWHAWSAVA-QQLTGLGRLDEAHALA 1046

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
                D   L      ++    H         +  +   ++          +     +  D
Sbjct: 1047 REAVDRFPLLGKLWLDLAQVCHALGNADGRLDALRQAVAVSPGWSLAARELAEALDD-AD 1105

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                 I           +  L      E       +       +         +     V
Sbjct: 1106 QRDDAIAVLERATVRNPTDALAHGFLAERLWDEGRSREALDRAKTAVRLEPGYDWAWHAV 1165

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
                  ++  ++             G   +                R+   +L       
Sbjct: 1166 QLWADRMELPDEPAELTRELARDRAGDPRVWL-----RLARTLHHPRFNDEVLAALDRAI 1220

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
                K      L   R  +        +  +P   ++  P      E   L  
Sbjct: 1221 ALEPKNVEAHDLKAERLAEMGRFDAALEAARPPQFVDDVPMILQGREAWVLAR 1273


>gi|302536766|ref|ZP_07289108.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C]
 gi|302445661|gb|EFL17477.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C]
          Length = 772

 Score = 39.5 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 31/314 (9%), Positives = 77/314 (24%), Gaps = 26/314 (8%)

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            A     + ++       P+      E   +          +     + +I  L  +   
Sbjct: 370 RAAEHRLELVSQREPGPDPVYAEYPDEPAEAEGVARRVRDLIAAGVPAGEIAVLYRINAQ 429

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
               ++              E           + + +  L     +  +      + +  
Sbjct: 430 SEVYEQALADAGVPYQLRGAERFFERAE----VQKAVLALRGAARSAGNDPLLDDVVELG 485

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                 L +          +    ++ ++L++L     +            +  +T  +D
Sbjct: 486 AQVRAVLSSTGWTAEPPAGSGAVRDQWESLAALVRLAEDFARSRPGAG---LAELTVELD 542

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                        + +     ++ L +D + L GL +G+ P   AK              
Sbjct: 543 ERRAAQHAPTVQGVTLASLHAAKGLEWDAVFLVGLTDGMMPITYAK-------------- 588

Query: 675 KTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE---NNIPTIASRWLQRLLVLGGTDFFDN 730
            T ++   +    +      R HL  + +L            SR+L  L           
Sbjct: 589 -TDDQVEEERRLLYVGVTRARMHLTLSWALSRAPGGRASRRPSRFLNGLRPGSAAPAARA 647

Query: 731 LKKRGQCYLDWTRK 744
                       R+
Sbjct: 648 GAPAEGVPRKRGRR 661


>gi|86158037|ref|YP_464822.1| DNA polymerase III subunit alpha [Anaeromyxobacter dehalogenans
            2CP-C]
 gi|123497627|sp|Q2IIA8|DNAE2_ANADE RecName: Full=Error-prone DNA polymerase
 gi|85774548|gb|ABC81385.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-C]
          Length = 1132

 Score = 39.5 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 60/619 (9%), Positives = 152/619 (24%), Gaps = 41/619 (6%)

Query: 82   GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
            G + E   +A+     +++    + +R   L  +   +      ++ ++      S    
Sbjct: 444  GLLFERFISAERGEPPDIDVDFEHERREEVLQYVYQRYGRDRAGMVCEVITYRGKSALRD 503

Query: 142  PANAIWLA----KNLADIIDIIETEE-KKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196
               A+ L+      LA ++   E       E L     +      +     L    + + 
Sbjct: 504  VGKALGLSLGQVDRLAKLVGSYEDLGQVGPELLAQAGLDAADSERVRMTLALARELQGFP 563

Query: 197  ERLVELNASSPVGYQ---------------IALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241
              L        +  +                 +++ + + L +     + + G       
Sbjct: 564  RHLSIHVGGFVITRRPLCETVPIEPAAMPGRTIVQWDKDDLAELDLLKVDLLGLGMLTAL 623

Query: 242  TARLMSTVANHPNGAIVLPGLDCHIPTAI-------------WNTITEKSTNITSSNTTY 288
            +  L     + P  A   P         I              ++I        +  +  
Sbjct: 624  SRALALLARHRPAPASPTPVPHPDALATIPAEDPEVYEMLGRADSIGVFQVESRAQMSLA 683

Query: 289  STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
                  +   L+  + I R    + G +   +  R       +       +    +    
Sbjct: 684  PRLRPRNFYDLVISVAIIRPGPIQGGMIHPYLRRRDGKEQVRYPYAPLEPVLARTLGVPL 743

Query: 349  IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
                    + +A      E +E   + +  R S ++     A + A          +   
Sbjct: 744  FQEQAMRLAVIAAGFTPGEADELRRV-MTHRRSHEKLAAMKARLVAGMAERGISGADAEE 802

Query: 409  FGINIDISAGIPLSTTLHSSILTSLLN--AIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466
                +   AG     +  +S    +     + + +       L+      F  P   +  
Sbjct: 803  IFKQLLGFAGYGFPESHAASFALLVYASAWLKRYHPAAFACALLNSQPMGFYAPHTLVED 862

Query: 467  AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
            AK     V       S     L+     R A       +      +    + +   +++ 
Sbjct: 863  AKRHGVEVRGVDVGCSGWESSLEGAAPGRPAAPGEAAVLRVGLHAIRGLPRAVGEAILEA 922

Query: 527  ILQC----ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
                    +  LV       +    L+ +          +           +      G 
Sbjct: 923  RAAGPFGSVAELVRRARLSRAWLVRLAEAGALGTLAPDRRGAVWRSLAVEADGGDLFAGL 982

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
                  + + E  +  + +A      ++       +         +     L   L +  
Sbjct: 983  APPEPEAALPEASAADEVSADFTTTGLSVRGHPMALVRPGLGGDRIRTARELGR-LPDRA 1041

Query: 643  TLILGGLNEGVWPKNTAKN 661
             + + GL        TA+ 
Sbjct: 1042 PVEVAGLVIVRQRPETARG 1060


>gi|148546830|ref|YP_001266932.1| chromosome segregation protein SMC [Pseudomonas putida F1]
 gi|148510888|gb|ABQ77748.1| condensin subunit Smc [Pseudomonas putida F1]
          Length = 1162

 Score = 39.5 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 54/591 (9%), Positives = 153/591 (25%), Gaps = 19/591 (3%)

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
           +   L +L      +     K +     L      A  + LA+ LA     +  EE +  
Sbjct: 401 QQARLQQLETSLERQAERQRKLVEEREQLGGDPQDAAMLELAEQLAS--SEMLLEELQLC 458

Query: 168 DLHALKNEKYGMWWLLAADFLKIA----SKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
           +   ++  +     +  A   +       +    RL  L A      +     A+  H  
Sbjct: 459 EEQVIERLESAREQMQQATQAQQQAQGDLQRLGGRLASLEALQQAALEPGAGAAQWLHGQ 518

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
              + P +  G          + + +     GA +   L        +  + +    +  
Sbjct: 519 GLEQQPRLAEGLRVEPGWELAVETVL-----GADLQAVLVDDFNDLDFAGLEQGELRLLL 573

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
           +    +T P   L K+   +D+     +                        + D     
Sbjct: 574 AVGAGATLPGSLLEKVEGRIDLAPWLGQVRPVEDLAQALEQRASLGEGQSLVSRDGYWVG 633

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
               ++    +    V  +    E E      +    +L++  ++   +   +      +
Sbjct: 634 RHFVRVRRGGEAEGGV--LARGQEIERLGQEQLEQEAALEQLDQQLQALREQQLDLEEQR 691

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
            +L R   + +   G   ++   S           +        + ++   A        
Sbjct: 692 EQLRRRTQDENRLHGELKASLSASRA--RAEQVELRRRRLHEELSELEEQRALEHEQLGE 749

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                     +  +  +    +M  +  + + +   +         +             
Sbjct: 750 ARLLLQEALELMAQDTEQREQLMARRDTLRESLDRVRQEARQHKDHAHQLAVRLGSLRAQ 809

Query: 524 VDHILQCITPLV--TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            D   Q +  L     +  +     +L++ +           +     R++         
Sbjct: 810 HDSTRQALERLELQAARLTERQEQLSLNLEEGEAPQEELRLKLEELLERRMSVDEEMRLA 869

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
           +       + +      +  A +   ++   ++   ++ +        +   L +   + 
Sbjct: 870 RLHMDEADRELRDAEKRRTQAEQQAQLLRGQLEQLRLECQGLDVRRKTLQEQLLADGYDL 929

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEM 690
             ++     E        +   L   +Q    +NL   E+Y  Q+     +
Sbjct: 930 QGVLATLEAEASEQGTEQELEQLEARIQRLGAINLAAIEEYEQQSERKRYL 980


>gi|148657094|ref|YP_001277299.1| glutamate synthase [Roseiflexus sp. RS-1]
 gi|148569204|gb|ABQ91349.1| glutamate synthase (NADPH) large subunit [Roseiflexus sp. RS-1]
          Length = 1554

 Score = 39.5 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 48/646 (7%), Positives = 131/646 (20%), Gaps = 43/646 (6%)

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
              +      +L      +                      +  P+   A+ L    I+ 
Sbjct: 28  ARLSGEPDHAILAYALMAVGRMAHRGGVAADGKSGDGAGVLTQIPRAFFARELAIRGIRY 87

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
                   +           +   +           +L  +   +       +  E    
Sbjct: 88  PVDDLAVGMFFLPQNEGHRNTARSVVEQVLAQYGMALLAWRPVPVNPHALGASARETCPV 147

Query: 368 REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
            E+A+        +     +++  +      A      L  F I    S  +     L +
Sbjct: 148 IEQALIARPPHNHTAPNAYERALYLARRTIEAEARAHHLEGFSIPSLSSRTLIYKGLLVA 207

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
             L      +     +     L     +   FP    ++    L             I  
Sbjct: 208 PALPDFYEDLRDPL-YETAIALYHQRYSTNTFPSWERAQPFRMLSHNGEINTLRGNIIWM 266

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
                  R A  +                   A +  D +   ++          S   +
Sbjct: 267 QAREAEWRRAAMEVEQPSLI-----------EAAIDGDPLAMALSAATIGPVVDTSGSDS 315

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             + +  +L V   +++       +P  W        +         G     +    + 
Sbjct: 316 AMLDNVLELLVMGGRDIRHSLTMLVPEAWERVHDMEPARRAFYQYHAGLMEPWDGPAALA 375

Query: 608 IITRLIDGETVKPKIEKSST-LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
                + G  +     + +  L     L         +++         K        + 
Sbjct: 376 FCDGQVVGLALDRNGLRPARYLLTDDGLVICGSEVGAVVIDESRIVRKGKVGPGQMIAAD 435

Query: 667 VMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
           +           +    A   +         ++        + P        R       
Sbjct: 436 LRTGRFEENDEIRSTLAARRPYAEWLKRHMRVLAPAGAPRVSEPDEPESHASRESKSALL 495

Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                        L                  +            + + +      P   
Sbjct: 496 GELQRAFGYTAEELA----------VVLKPMLRDGQEPVGSMGDDTPTAVLADRPRPLYN 545

Query: 786 YARRILKL---DFIPHFKKDPDRTD---RGTLFHNIITELIKKRINKNTP-----EINHL 834
           Y ++         I   +++   +     G   H ++ +     + +        E   +
Sbjct: 546 YFKQRFAEVTNPPIDPIREELVMSLSFSLGRRGHLLLEKPEHAHLLRLASPVLNNEHLAM 605

Query: 835 MKQIIDSHFEKENLPPHIDII--------WRHLFHKISHSFLEHEE 872
           ++ + D  F    L                     + + + +  ++
Sbjct: 606 LRDLRDPAFATATLNATFVADDGVQGMLSALDRLCREAEAAIAADK 651


>gi|306407929|dbj|BAJ16471.1| polyketide synthase [Streptomyces graminofaciens]
          Length = 3799

 Score = 39.5 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 59/573 (10%), Positives = 123/573 (21%), Gaps = 11/573 (1%)

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            +  AT   +    +  +   V        P A  + +  +            +       
Sbjct: 2889 ATGATTVRVRLTTDDADTVAVTVTDTAGTPVASVDALVTRPVTAAQFAAGRPSGQSGLFE 2948

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                 +            +     G   + S   L      + +   +   +       S
Sbjct: 2949 VEWAPVPTPAAGTASWAVLGGGEVGGVGLGSYDDLAALRRAVDSGAPVPEVVLTFCGGRS 3008

Query: 358  DVALI-EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
            + A++        EA+++             + A++T+    A             +   
Sbjct: 3009 ETAVVPGTHTATREALALLHEWLADERFAGARLAVVTSGAVAAGPDDEVTDLAAAAVWGL 3068

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
                 S      +L  +                 +  +A  G        A+ A      
Sbjct: 3069 VRSAQSEHPGRFVLLDVDGRAVAGAAVPTALATGEPQVAVRGGELLVPRLARAAKAREVG 3128

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
            R         +   LV          T               L+    D + Q ++ +  
Sbjct: 3129 RDAAGVVWDPEKSLLVTGASGVLAGLTVRHAVSVWGVRHVVLLSRGGADALAQELSEVGV 3188

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                         ++D   +               + +     +   + SL  + +E   
Sbjct: 3189 SVRQAR-----CDVADREAVAAVLADIPAAHPLGGVIHTAGVLDDGVIESLTPERLEPVL 3243

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
              K +   W+  +T  +D          +      G       N     L          
Sbjct: 3244 RPKVDGAWWLHELTAGLDLSVFALFASGAGVFGAAGQGNYAAANAFLDALALHRSRKGLP 3303

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
             TA +  L           T  +      H     +  + L    S    + P     W 
Sbjct: 3304 ATALSWGLWAERSGLTGQLTDAELNRMTHHGVLPLSSEQGLALLDSALATDRP-----WF 3358

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
              + +  G              L             +         L  +    S +E +
Sbjct: 3359 VPVRIDLGAVRRTGFDHPLLRGLVRVPSRRTVAALDNGTPATDPASLWGRLVALSPAEQE 3418

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
              + D     A  +L          D    D G
Sbjct: 3419 AALLDLVGAQAAAVLGHTDPEQVTTDRPFLDLG 3451


>gi|162450657|ref|YP_001613024.1| hypothetical protein sce2385 [Sorangium cellulosum 'So ce 56']
 gi|161161239|emb|CAN92544.1| hypothetical protein sce2385 [Sorangium cellulosum 'So ce 56']
          Length = 773

 Score = 39.5 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 155/689 (22%), Gaps = 46/689 (6%)

Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
               I+   + G+     R++      P  +++   L                  +    
Sbjct: 22  PAQTILSLAAPGTAAMLDRVLDAEGAAPAKSVIHADLQRSFEVETARVSEALRAAVQDDR 81

Query: 286 TTYSTHPQYSLA---KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
              +   Q   A    L   L        +       +    +                 
Sbjct: 82  FREAVVWQNRRALHTGLDGLLRKPPGHRDKKTRQREALVASYLQRYCVKNDSIGFFGPIG 141

Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402
                + P          L+ A     E+ +I               A+ +   +     
Sbjct: 142 WCRIGRGPEAMTARPGPGLLAARKVYFESWAID--------------AIASRLSSDPELR 187

Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
                R    I +  G     T+ +  LT    A+ +  D +  A  +   L        
Sbjct: 188 PFAAPRLFPYIRVDGGALQVPTVGAMPLTPAQAAVLEGCDGVTTARALARRLTSDPSLGL 247

Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                   +   A      ++D      L  +    +             +    +    
Sbjct: 248 GGEAEVFEILDRACAMGVMAWDFEVALQLSPEEALRRALAGIEDPALRERARLPLDELER 307

Query: 523 LVDHILQCI---TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
             D +         L    T    T   L+ +  T+          L       +L  E 
Sbjct: 308 ARDEVAAAAGDSRALDAAMTRLEDTFHRLTGAATTRSDGEMYAARTLVYEDCRRDLDLEI 367

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
               L  L   +       +    E       ++     +   ++      L      L 
Sbjct: 368 GAPLLRKLAPPLSLLLLSGRWVTYEVGRRYVGVLRDLFERLSAQQGGGPVELTVFHKALA 427

Query: 640 NFDTL--ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
             +     + G+ E V           + ++Q     ++ E+       D   A      
Sbjct: 428 EIEPWMREMRGMPEWVGQVQHELQRRWAEILQVPAGARSVERDPAALLADVRRAFDVPRP 487

Query: 698 IYTRSLRENNIPTIASRWLQRLLV-----LGGTDFFDNLKKRG---------QCYLDWTR 743
            + R+        IA+R ++ L       + G     +              +  +D   
Sbjct: 488 GWARARYMCPDLMIAARDVEALRRGECELVMGEMHLTHTLTASCFAFQHPSMRELIDLWE 547

Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD- 802
             +             +     +    S         +P    A R L++  +     D 
Sbjct: 548 LDNPAPSVIPVLPKAQWCQRINEIALGSGDLRYAFSREPSPAPAARTLRVADLVVVDHDG 607

Query: 803 ---------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                      R         +++ ++   ++    E +    +I D    +E       
Sbjct: 608 ALEVHARGGGYRGGLLDFMGMMLSSMVTNALDVLPAEDHTPRLKIGDLVVARERWRFVAS 667

Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
            +      +    +L      ++     F
Sbjct: 668 QVTFAREEEPLARWLAARRWKRAHGLPRF 696


>gi|240169597|ref|ZP_04748256.1| putative toxin subunit [Mycobacterium kansasii ATCC 12478]
          Length = 3193

 Score = 39.1 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 85/758 (11%), Positives = 190/758 (25%), Gaps = 98/758 (12%)

Query: 52   PTKRAIQELRSEFIEI----------TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101
            P++ A + +R    +                T +P I  + +++E   T          P
Sbjct: 936  PSQVAGRTVREILTDRRPDLVTTKLNCPNTETAVPYIDLVCEILEAAVTGADPDGQTTRP 995

Query: 102  PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
                                 +P+  +D   ++  S          L +  A ++  +E 
Sbjct: 996  AEE---------------LRAVPEHQRDGAYDTLRSADFPMTGVFDLWQEDARVL--LEH 1038

Query: 162  EEKKWEDLHALKNEKYGMWWLLAADFLKI-----------------ASKYWTE------- 197
                   L  +  +       +AA+ L I                   K+W         
Sbjct: 1039 LGVPRWRLMGVFGDPDADAVSIAAEQLGISSHETSIITTAAATPAAQQKFWGLDPDQAEI 1098

Query: 198  -RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA--------GSTGSIPATARLMST 248
              L  +  +     QI  +R        G   P+ +A        G       T  ++  
Sbjct: 1099 PVLDVMGHAHLTYEQILELRTLTWINPPGAPAPVQLARPVSSASLGDQRMTGITVDVLDR 1158

Query: 249  VANHPNGAIVLPGL--DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
            +      +  +P    +  +     +                +   Q  L    + L   
Sbjct: 1159 IHRLLRLSRHVPWDLWELDLLVRTTHLGGGAVNGPALVALRDAAQLQGRLNVPAETLATW 1218

Query: 307  REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
              D+ R G        R+ + + + L  + + +   D                  + A  
Sbjct: 1219 FGDLPRQGRPDPADPARAAMSAYAALFANPAVLNPPDPAFATPGGGAITADHHPALLAAL 1278

Query: 367  EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
               E+   A+                   +  A      L+       ++ G+ +     
Sbjct: 1279 SVTESELTALL-----------------AKVGATFDIAHLSGLVRWATLARGLGMRAGEL 1321

Query: 427  SSILTSLLNAIFKLN-DFMAIATLVK----HPLAKFGFPEKYLSRAKNALELVALRGNKN 481
             ++ T + + +        A+   +        A     E                 +  
Sbjct: 1322 LALATLVESVVEDPFASPAALLEFLDVRDVVHTAGVAPAELDALLHARPDSPYLPGDDAT 1381

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
            +     L+  +    A  +    + H  +       E A LL+  I     PL T  T+ 
Sbjct: 1382 TDAARTLRESLRTATADTRAGAAISHVATTFG-VPAEHAALLLARIAVNGQPLATRFTDA 1440

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW-FEEEGKTLSSLFSKIIETGSCIKA 600
                 + + +  T+L+     ++          +      G T       +++  + +  
Sbjct: 1441 AIDANDAAGNYVTELSAAAQPSLYASYALLHKVVRLMRVHGVTALDDLRWLLDNAADVGV 1500

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
             A  + D+         +       + L +L            L     +     +  A 
Sbjct: 1501 LA--FGDLPVSAEPPTDLFGDWLALARLRLLRATVPSAPELLRLGSKPASTLAQLRTAAA 1558

Query: 661  NPFLSRVMQSDL--NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718
            +  LS    + L    +   + +   A     A   + L  + +            W  R
Sbjct: 1559 DFGLSADDLAKLDAGRRAPYRDLRFLARLCAAAAQIKRLGVSAAT--------CFAWADR 1610

Query: 719  LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
                   D    +++  +   +    L   T      R
Sbjct: 1611 DTDAAQADIARQIRQTAKSKYEAAAWLSTVTPMQDNMR 1648


>gi|326774880|ref|ZP_08234145.1| amino acid adenylation domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326655213|gb|EGE40059.1| amino acid adenylation domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 1103

 Score = 39.1 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 56/522 (10%), Positives = 126/522 (24%), Gaps = 12/522 (2%)

Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
                      W+  +  S            HP  +L      + +           +  
Sbjct: 5   APGSRTPAPHAWHGTSPLSPAQKRFWFLDRAHPGTALYNSCSAIRLSGPLDVAATVGAVT 64

Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
              R   + +S  P ++   R        +P     F D+  +       E   IA    
Sbjct: 65  EIVRRHDVLRSAFPVESGAPRVRIAPARPVPT---AFLDLTRLPPPLRAAEVRRIAEEHA 121

Query: 380 MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               + ++   L T     A      L  +   +        S  +    L  L +A  +
Sbjct: 122 RRPFDLERGPLLRTVLLREADDDHTLLLNWHHIVCDGW----SRHIFVDELLELADARAE 177

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                     +    A+    E     +    E       +    + D   L  DR    
Sbjct: 178 GRAPR--LDPLPAQYAELVAREGRRRGSDTEHEAHLAYWRERLSGLTDATRLPPDRTPPD 235

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
           +        +  L     +    L          +V       +   +L   D    T +
Sbjct: 236 RPTPPSASLRHTLDAGLPDRVAELARAERVTP-FMVLLTAFVVALSRHLDRDDVVVGTPS 294

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
            L++    +    P L      +T  S    + +  + ++   +   +      +     
Sbjct: 295 ALRDDPEADVLIGPFLNIL-ALRTDLSGDPTVRQALARVRKTCLGAYEHHAAPFEDVVSA 353

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
               ++ +      +  + +    + +G                   +    L       
Sbjct: 354 IGAARTGSRTPFFGITFQYIATPPVHVGPGGLTAHTTEVEPGLAKFDLTVDVLAEDGHTD 413

Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR-GQCY 738
            + Q   D   A     L+       +++     + + R   +G       L+   G   
Sbjct: 414 VLAQYDSDLYRAESVNGLLLLWQSVLDDMTRDPEQPVGRTGEIGAARRTPLLEAAVGAPV 473

Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
                       +   +R    P L +     ++ E+ +  N
Sbjct: 474 GAPAEASVLDVFEQWAERTPDAPALVSGATRLTYGELDRAAN 515


>gi|288960866|ref|YP_003451206.1| TPR repeat-containing protein [Azospirillum sp. B510]
 gi|288913174|dbj|BAI74662.1| TPR repeat-containing protein [Azospirillum sp. B510]
          Length = 974

 Score = 39.1 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 39/496 (7%), Positives = 113/496 (22%), Gaps = 16/496 (3%)

Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
             +    +               S   +  S     S +   T + R      ++     
Sbjct: 51  ACVPAPRNSAGAAVPVTWHWPRGS-ANWRLSRPGPTSIIRRTTRECRQRMKQNHRPTGSV 109

Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL---ELTRFG 410
              + +      ++  +    A      L  + +++  +     +  +       + R  
Sbjct: 110 DTQTLLTRAVTHHQNGQLAEAATLYDQVLKRSPRQADALHLSGLIKAQTGALAEGIERIR 169

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
             +      PL  T    +L +          F + A  +  PL       +  ++ +  
Sbjct: 170 QAVKADPRQPLFQTNLGRLLEAAERWEEAATAFRSAA--LLTPLDPAPPRMEAAAQTRLG 227

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
               A +       +    +     +     +       +        L    +      
Sbjct: 228 RHGAAAQALSRVMVLEPADAESAGNLGDSLYDGGRLLPAAAWYGRAARLEPQRILAAFNR 287

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
              L        +      ++         L+       R           + L +L   
Sbjct: 288 GAALRDAGRIGEALAVFRELAGRAPQMAEPLEQCMQLGQRLGNGEGAMPAARRLLALSPG 347

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL-------ESRLLNFDT 643
                  +       I  + RL+  + +  ++  +    + G             L  D 
Sbjct: 348 HAAALRTLCMVETPPIRELRRLVRLDPLAEEVVLTLAGRLYGGWTLAAERAYRHALVLDP 407

Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703
                L+     + TA     ++  +  + +   +  +   A      +       +   
Sbjct: 408 TSGLALSGLGLARATAGLDGATQAARRAMRVAPDDAVLAVNAGSAFQLDLRPDAALSCHR 467

Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
           R   +    +        +G      N  +     L+  R+L    +            +
Sbjct: 468 RALALEPGNAAAWV---NVGTLRLDANAAEEAITPLNRARRLADPGQLALAYSNLGVAWM 524

Query: 764 EAQPRTYSFSEIKQLI 779
                  + +  +  +
Sbjct: 525 ALGLHGQAVASFRAAL 540


>gi|110611744|dbj|BAE98155.1| putative non-ribosomal peptide synthetase [Streptomyces lasaliensis]
          Length = 2609

 Score = 39.1 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 80/856 (9%), Positives = 175/856 (20%), Gaps = 97/856 (11%)

Query: 85   VEEKFTADLLLSYNLNPPVSNIQRLLELAR-----------LILIWRNKLPDIIKDLYPE 133
               +  AD          +   ++   L              +    ++      D    
Sbjct: 429  FLRRALADPRAPVGTVTALHPCEQRALLTEYAGPTVPTPPVTLTELLDRQAHATPDAVAL 488

Query: 134  SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193
                 P +       +  LA ++          E   A+   +     +     L+  + 
Sbjct: 489  LWEGSPTTYRELAERSGRLARLL---TERGAGPERCVAVAVPRSPELVVALIAVLRAGAA 545

Query: 194  YW---TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
            Y     +      A      + AL+    +   +     + +       PA   +     
Sbjct: 546  YLPVDPDYPAARVAFMLADARPALLLTAKDTADRLPPTDVPVLLVDDVPPAEGPVAPAAH 605

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS--THPQYSLAKLLDFLDIKRE 308
               + A ++                    N                 L K     D+   
Sbjct: 606  GVDHPAYMIYTSGSTGRPKGVVVTHAAIVNRLLWMQDRFRLDGTDRVLQKTSASFDVSVW 665

Query: 309  DVKR-------LGNVSNEMYGRSMVISKSFLPPDTSDMRN--TDILENKIPNIQKCFSDV 359
            +          L     + +     +++       +      + + E          + +
Sbjct: 666  EFFWPLITGATLVIARPDGHRDPDYLAELIRRAGVTTAHFVPSMLAEFVTDGAAAACTGL 725

Query: 360  ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
              +    E   A   A   R                 NL    +  +          A  
Sbjct: 726  RRVVCSGEALPAELAARFHRTFG----------VPLHNLYGPTEAAVDVTAWEYRPGART 775

Query: 420  PLSTTLHSSILTSLLNAIFKLNDFMAIATL-VKHPLAKFGFPEKYLSRAKNALELVALRG 478
                T   +    +L++  +         L +       G+ ++    A+  +       
Sbjct: 776  VPIGTPIWNTALYVLDSRLRPLPPGVHGDLYIAGAGLARGYHDRPGLTAERFVACPFGEP 835

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
             +  Y   DL                          E +E+   L  H       +V   
Sbjct: 836  GRRMYRTGDLARWNAQGELEFAGRADHQVKIRGFRVEPQEIEDTLTGHPAVLRAAVVARP 895

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG--- 595
                        +D     V  +  V     R     W    G  L+ L   +       
Sbjct: 896  GRG---------ADAAAQLVAYIVPVTAGGSRPAGADWDLHAGVDLAELRGFVAARLPAH 946

Query: 596  --SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
                               +D   +              T E  LL      + GL++  
Sbjct: 947  LVPAAFVALDRLPMTANGKLDRAGLPEPEITRQAHRPPATREESLLAAAFAEVLGLSDIG 1006

Query: 654  WP--------KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
                       +      ++R     L L     +  +       A          +  E
Sbjct: 1007 VDDDFFALGGDSIRAIQVVARARAGGLALSPRTVFDCRTVAALAQAASRTDAPAALAEPE 1066

Query: 706  NNI-PTIASRWLQRLLVLGGT------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
                  +    + RL    G        +            D T  L          R +
Sbjct: 1067 GGGVGLLPLPPMARLHAERGPGLDRLAQWLVLELPEAVDLHDLTEALRCVLDGHDVLRSR 1126

Query: 759  PFPPLEAQPRTYSFS-----------------EIKQLINDPYAVYARRI-------LKLD 794
                        +                     + L+    A   R I       L+L 
Sbjct: 1127 LTDDGLLVQPPGTVDAGALMDRIDCTGDWGGEAWQTLLRARAAEAVRHIDARAGRMLRLV 1186

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ----IIDSHFEKENLPP 850
            +       P R       H ++  +  + +  +       ++     ++           
Sbjct: 1187 WFRGTAGGPGRLLVA-AHHLVVDGMSWRILLPDLAAAWRQVRDGRTPVLPRVGTSLRGWL 1245

Query: 851  HIDIIWRHLFHKISHS 866
            H          +++ +
Sbjct: 1246 HALAEEAARPERVAEA 1261


>gi|320329214|gb|EFW85211.1| pyoverdine sidechain peptide synthetase IV, D-Asp-L-Ser component
            [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 2875

 Score = 39.1 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 75/686 (10%), Positives = 174/686 (25%), Gaps = 61/686 (8%)

Query: 126  IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
              +  + ++ +  P+   +AI L   L  +I+          D   L   +    W    
Sbjct: 1103 PERQHWNQALMLKPLQTLDAIHLQAALTALIEQ--------HDALRLGFTQQDGQWQATF 1154

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
              L      WT  L              L   EA+  +    GP++ A          RL
Sbjct: 1155 GALNTRDLLWTHEL------DSAERLPELAD-EAQRSLDLKNGPLLRAVLIDLPQGEQRL 1207

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITE---KSTNITSSNTTYSTHPQYSLAKLLDF 302
            +  + +     +    L   +  A     T         TSS  +++ H Q         
Sbjct: 1208 LLVIHHLVVDGVSWRVLLEDLQQAYVAIATGQPLALATKTSSLQSWAEHLQAYAQSPALA 1267

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
             ++     +                 +           N +     + +    +     I
Sbjct: 1268 QELDYWQTQLKDVSDALPCDHPHGGQQQKHALSVVTQLNGEQTRQLLQDAPAAYR--TQI 1325

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
                    A  ++              ALI  + +    +   L         S   P+ 
Sbjct: 1326 NDLLLTALARVVSRWTAQPH-------ALIRLEGHGREDLFDTLDITRTVGWFSNLYPVR 1378

Query: 423  TTLHSSILTSLL------NAIFKLNDFMAIATLVKHPLAKFGFPEKYL------------ 464
             T  +++  SL+       A+            +    A+       L            
Sbjct: 1379 LTPQATLADSLMTIKEQLRAVPDKGIGYGALRYLGSESARQTLQALPLGSIVFNYLGQFD 1438

Query: 465  --SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                A+ AL   +   +  S       +  L              W    +  +++    
Sbjct: 1439 GSFDAQGALFTPSAESSGASQSADAPLAAPLSINGQVYGGELRLSWTFSGAVFERDTVQR 1498

Query: 523  LVDHILQCITPLVTYKTNKNSTCGN---LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
            L D     +  L+ + T +           ++  ++  ++ L           P    ++
Sbjct: 1499 LADEYAVELQQLIAHCTREGVAGVTPSDFPLARLSQSQLSNLPIPAAQIEDIYPLAPMQQ 1558

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                 +          + ++   +  +D+       +      E   + F+    +S  +
Sbjct: 1559 GMLFHTLFEQDAGNYINQMRVE-VSGLDVPRFRAAWQATLDAHEVLRSGFVSHLEQSLQV 1617

Query: 640  NFDTLILGGLNEGVWPKNTAK-NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
                + +  +      ++    + + +   Q   +L                     H +
Sbjct: 1618 VLRNVSMPFVELDARAQSGEWIDDWANADRQQGFDLARGP----LLRLAVLRTGEQTHQL 1673

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ-----PH 753
               S         +SR L  +L             R + Y++W ++ D    +       
Sbjct: 1674 IYTSHHILMDGWSSSRLLGEVLQRYSGQTLPRQVSRYRDYIEWLQRQDAALSERFWTGQL 1733

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLI 779
             +  +P   ++A   + S       +
Sbjct: 1734 AELDEPTRLVQAFKASGSEQGHGDYL 1759


>gi|15827263|ref|NP_301526.1| ATP-dependent DNA helicase [Mycobacterium leprae TN]
 gi|221229741|ref|YP_002503157.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
 gi|13092812|emb|CAC30146.1| putative ATP-dependent DNA helicase [Mycobacterium leprae]
 gi|219932848|emb|CAR70731.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
          Length = 717

 Score = 39.1 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 61/541 (11%), Positives = 127/541 (23%), Gaps = 70/541 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T+RA  E+RS                ++LG  V+      ++     +    
Sbjct: 60  GQVLAVTFTQRAAAEMRSRL--------------RALGAAVQAVSDFGVVRVLTFHAAAH 105

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESP--LSLPISPANAIWLAKNLADIIDIIETE 162
              R     R+I     +L D        +   + L     +   LA  +      +   
Sbjct: 106 RQLRYF-WPRVIGDTGWQLLDSKFATVARAASSVRLHAGTDDVCDLAGEIEWAKASLIGP 164

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN---------ASSPVGYQIA 213
           E+    + A+  +       +A+         +       N             + +  A
Sbjct: 165 EEYVAAVAAIGRDTPLDAAQIAS-----VYAAYEALKARGNGVPGVTLLDFDDLLLHTAA 219

Query: 214 LMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
            +  +A      +      ++       P   R++S      +   V+   D +     +
Sbjct: 220 AIENDAAVAEEFRDRYRCFVVDEYQDVTPLQQRVLSAWLGDRDDLTVV--GDANQTIYSF 277

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM--VISK 329
              +                P  ++ +L        + V     V    +GR        
Sbjct: 278 TGASPCFLLDFPRRF-----PDATVVRLERDYRSTPQVVSLANQVIAAAHGRVADSKFQL 332

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
           S            +  +          S   LIE      E                   
Sbjct: 333 SGQREPGPAASFHEYSDEPAEAAAVAASIARLIEFGTSPSE------------------I 374

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS-SILTSLLNAIFKLNDFMAIAT 448
           A++      +   +  LT  GI   +  G            L +L  +  + +       
Sbjct: 375 AVLYRVNAQSEAYEEALTEVGIAYQVRGGEGFFNRQEIKQALLALQRSAERSSQTEP--- 431

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
               PL+                 +    G++       L +L          +  +   
Sbjct: 432 --NSPLSDVVRGVLEPLGLTAEKPV----GSRARDRWEALTALAELADDEVAQHPRLDLP 485

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                   +  A          +  L   K  +      + ++D T      L +    E
Sbjct: 486 GLLAELRLRADARHPPVVQGVTLASLHAVKGLEWDAVFLVGLADGTLPISRALAHGAESE 545

Query: 569 H 569
            
Sbjct: 546 P 546


>gi|320324849|gb|EFW80921.1| pyoverdine sidechain peptide synthetase IV, D-Asp-L-Ser component
            [Pseudomonas syringae pv. glycinea str. B076]
          Length = 2875

 Score = 39.1 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 75/686 (10%), Positives = 174/686 (25%), Gaps = 61/686 (8%)

Query: 126  IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185
              +  + ++ +  P+   +AI L   L  +I+          D   L   +    W    
Sbjct: 1103 PERQHWNQALMLKPLQTLDAIHLQAALTALIEQ--------HDALRLGFTQQDGQWQATF 1154

Query: 186  DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
              L      WT  L              L   EA+  +    GP++ A          RL
Sbjct: 1155 GALNTRDLLWTHEL------DSAERLPELAD-EAQRSLDLKNGPLLRAVLIDLPQGEQRL 1207

Query: 246  MSTVANHPNGAIVLPGLDCHIPTAIWNTITE---KSTNITSSNTTYSTHPQYSLAKLLDF 302
            +  + +     +    L   +  A     T         TSS  +++ H Q         
Sbjct: 1208 LLVIHHLVVDGVSWRVLLEDLQQAYVAIATGQPLALATKTSSLQSWAEHLQAYAQSPALA 1267

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
             ++     +                 +           N +     + +    +     I
Sbjct: 1268 QELDYWQTQLKDVSDALPCDHPHGGQQQKHALSVVTQLNGEQTRQLLQDAPAAYR--TQI 1325

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
                    A  ++              ALI  + +    +   L         S   P+ 
Sbjct: 1326 NDLLLTALARVVSRWTAQPH-------ALIRLEGHGREDLFDTLDITRTVGWFSNLYPVR 1378

Query: 423  TTLHSSILTSLL------NAIFKLNDFMAIATLVKHPLAKFGFPEKYL------------ 464
             T  +++  SL+       A+            +    A+       L            
Sbjct: 1379 LTPQATLADSLMTIKEQLRAVPDKGIGYGALRYLGSESARQTLQALPLGSIVFNYLGQFD 1438

Query: 465  --SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                A+ AL   +   +  S       +  L              W    +  +++    
Sbjct: 1439 GSFDAQGALFTPSAESSGASQSADAPLAAPLSINGQVYGGELRLSWTFSGAVFERDTVQR 1498

Query: 523  LVDHILQCITPLVTYKTNKNSTCGN---LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
            L D     +  L+ + T +           ++  ++  ++ L           P    ++
Sbjct: 1499 LADEYAVELQQLIAHCTREGVAGVTPSDFPLARLSQSQLSNLPIPAAQIEDIYPLAPMQQ 1558

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
                 +          + ++   +  +D+       +      E   + F+    +S  +
Sbjct: 1559 GMLFHTLFEQDAGNYINQMRVE-VSGLDVPRFRAAWQATLDAHEVLRSGFVSHLEQSLQV 1617

Query: 640  NFDTLILGGLNEGVWPKNTAK-NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
                + +  +      ++    + + +   Q   +L                     H +
Sbjct: 1618 VLRNVSMPFVELDARAQSGEWIDDWANADRQQGFDLARGP----LLRLAVLRTGEQTHQL 1673

Query: 699  YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ-----PH 753
               S         +SR L  +L             R + Y++W ++ D    +       
Sbjct: 1674 IYTSHHILMDGWSSSRLLGEVLQRYSGQTLPRQVSRYRDYIEWLQRQDAALSERFWTGQL 1733

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLI 779
             +  +P   ++A   + S       +
Sbjct: 1734 AELDEPTRLVQAFKASGSEQGHGDYL 1759


>gi|13638521|sp|P53528|UVRD_MYCLE RecName: Full=Probable DNA helicase II homolog
          Length = 714

 Score = 39.1 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 61/541 (11%), Positives = 127/541 (23%), Gaps = 70/541 (12%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T+RA  E+RS                ++LG  V+      ++     +    
Sbjct: 57  GQVLAVTFTQRAAAEMRSRL--------------RALGAAVQAVSDFGVVRVLTFHAAAH 102

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESP--LSLPISPANAIWLAKNLADIIDIIETE 162
              R     R+I     +L D        +   + L     +   LA  +      +   
Sbjct: 103 RQLRYF-WPRVIGDTGWQLLDSKFATVARAASSVRLHAGTDDVCDLAGEIEWAKASLIGP 161

Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN---------ASSPVGYQIA 213
           E+    + A+  +       +A+         +       N             + +  A
Sbjct: 162 EEYVAAVAAIGRDTPLDAAQIAS-----VYAAYEALKARGNGVPGVTLLDFDDLLLHTAA 216

Query: 214 LMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271
            +  +A      +      ++       P   R++S      +   V+   D +     +
Sbjct: 217 AIENDAAVAEEFRDRYRCFVVDEYQDVTPLQQRVLSAWLGDRDDLTVV--GDANQTIYSF 274

Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM--VISK 329
              +                P  ++ +L        + V     V    +GR        
Sbjct: 275 TGASPCFLLDFPRRF-----PDATVVRLERDYRSTPQVVSLANQVIAAAHGRVADSKFQL 329

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
           S            +  +          S   LIE      E                   
Sbjct: 330 SGQREPGPAASFHEYSDEPAEAAAVAASIARLIEFGTSPSE------------------I 371

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS-SILTSLLNAIFKLNDFMAIAT 448
           A++      +   +  LT  GI   +  G            L +L  +  + +       
Sbjct: 372 AVLYRVNAQSEAYEEALTEVGIAYQVRGGEGFFNRQEIKQALLALQRSAERSSQTEP--- 428

Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
               PL+                 +    G++       L +L          +  +   
Sbjct: 429 --NSPLSDVVRGVLEPLGLTAEKPV----GSRARDRWEALTALAELADDEVAQHPRLDLP 482

Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                   +  A          +  L   K  +      + ++D T      L +    E
Sbjct: 483 GLLAELRLRADARHPPVVQGVTLASLHAVKGLEWDAVFLVGLADGTLPISRALAHGAESE 542

Query: 569 H 569
            
Sbjct: 543 P 543


>gi|331699996|ref|YP_004336235.1| winged helix family transcriptional regulator [Pseudonocardia
            dioxanivorans CB1190]
 gi|326954685|gb|AEA28382.1| transcriptional regulator, putative ATPase, winged helix family
            [Pseudonocardia dioxanivorans CB1190]
          Length = 1070

 Score = 39.1 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 74/751 (9%), Positives = 162/751 (21%), Gaps = 35/751 (4%)

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
            V           +  L       +R L L  L+ + R  L  +      +          
Sbjct: 300  VDRFADELRRDGALVLPVTCFEAERSLYLEPLVQVVRAALRRVDP---ADVLALAGPRLD 356

Query: 144  NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL--LAADFLKIASKYWTERLVE 201
                L   LAD+I   + E+        L + +          A F+   +      +  
Sbjct: 357  TLAQLVPELADLIAEADREQAGPGPGPELADPELAHGRAVDAFAGFVARLATRRPVLVTV 416

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
             +A       IA +              +++        A       + + P   +VL  
Sbjct: 417  EDAHHAGRSTIAALGVAVREWRTIPGARVLLV--VTEQGAHPVAAEPLHDVPGERLVLGP 474

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321
            LD      +                T  +         +  L  + +      +      
Sbjct: 475  LDVAAVAELVRRAGTGHDPRRLHARTGGS------PLFVTELLRQPDTPGSRPDDGAVPV 528

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
             RS+    +       +     + +  +       +D+A +   +ER        A+R  
Sbjct: 529  PRSLRDIVAERIAGVDEDVAELLGQAAVLGASFTPADLAALAGIDERTCTTRADEAVRHG 588

Query: 382  LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
            L   ++ +    +D                    S+  P+  + H               
Sbjct: 589  LLRLRRDALAFVSDVV------------RQVAYESSPSPVRVSRHRRAARMFDARPETAA 636

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
               A A         +    +  SRA    E V L              +VL +   ++ 
Sbjct: 637  RHYAAAGDWSSAADAWTAAAEVASRAFANNEAVELLSKAVGAARSAGDVVVLVQTLLRRG 696

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                   +   +  D E A+ L   +          +    +            L     
Sbjct: 697  RACSQIGRHDDAVADHEQALELARGMDDSELEARALEQLGWTALYARDAMAAVDLAEQAT 756

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            +                     +          G+  +       D  TR +        
Sbjct: 757  ELAESAAAAPGALPSATLLLGRVRHWDGDYAGAGTAYEQVLGSGPDDSTRGMALAYQGAL 816

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
            ++                   T++                                    
Sbjct: 817  LQHMDRFT----------EAKTVLARAAALCRRTGEFRPLLQTLFFTALARGDSGDFAGA 866

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
             +A  +         + + R+  E     +     Q        +    L +RG   L+ 
Sbjct: 867  LRALDNARRLIDAEKVGFYRAGIETATSWLWQELGQVHRARDHAEHAVELARRGGGALEL 926

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
             ++L                   A   T +   + + +        R +           
Sbjct: 927  EQELHALLALADCDLLLGHDDAAADLVTAAAPTLDRSLPFKPRAVMRYLEMRSRWEPEHA 986

Query: 802  DPDRTDRGTLFHNIITELIKKRINKNTPEIN 832
            +    +           L    +++      
Sbjct: 987  EALLVEARLYASPKYEALALAALDRPDEAAR 1017


>gi|293346231|ref|XP_001080881.2| PREDICTED: spectrin, beta, non-erythrocytic 5 [Rattus norvegicus]
          Length = 3538

 Score = 39.1 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 53/528 (10%), Positives = 130/528 (24%), Gaps = 22/528 (4%)

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
             L   +    W          S+   ++L++L     +  +     +  E  +   +  
Sbjct: 354 EGLGPAELAQCWAELERVEASRSQAMQQKLLQLERLDTLARRFQCKASHRESFLNDAEQM 413

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
           +  A ++ + PAT      V        +L                           +++
Sbjct: 414 LEQARASLTDPAT------VEAATQRLNMLEAGLLPQEGRFQALGEMADILQQEEYHSWA 467

Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                   +  +     R  ++ L      + G   V+S        +D           
Sbjct: 468 D----VACRQKEITGRWRRLLQCLQEERKCLAGTQAVLSLLQEVEAATDQLGELQGLAGS 523

Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
              +   ++V L+   ++  EA   A   R  ++    ++A + + +  + +        
Sbjct: 524 TACEPQLAEVVLLLQSHDLLEAQVSAH--RTHVNRLVHQTAQLDSSQGTSVQTLQTKALA 581

Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
              +  S  + L  T  + +  +L  A F  +     A L +H                 
Sbjct: 582 LDELHHSL-VSLVRTRRTLLEQTLQRAQFLHSCEEEEAWLQEHRQLVEKAAPGRDLTQIA 640

Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                  +      ++   +++ +D +   +N +           E  E    +   +  
Sbjct: 641 ---NALQKHKALETELHRHQAVCIDLMQRGRNLSVKEPLTQPDPLERAEAVQGIWQLLWT 697

Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                 T      +       SD  +     LQ     E         + + + L     
Sbjct: 698 GAARRRTRLQT--ALLVGQYFSDLAEAASWLLQRQKQLESASYGK--DQSDSEALLQQHL 753

Query: 590 KIIETGSCIKANAIEWIDIITRLID--GETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
           ++ +       +  E  D          + V     +               +   L   
Sbjct: 754 RLEQGLCAFAVDLRELEDQARAAAALVSQMVHTGTREGPRHVPPTPNVRSPQSIGVLSAL 813

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
           GL                    + L  +   +   +        +  R
Sbjct: 814 GLPGEDPRTAPQAEYDFHFDSNAILQAQADLRQNYENLRALAKLHRAR 861


>gi|330824844|ref|YP_004388147.1| hypothetical protein Alide2_2263 [Alicycliphilus denitrificans
           K601]
 gi|329310216|gb|AEB84631.1| protein of unknown function DUF893 YccS/YhfK [Alicycliphilus
           denitrificans K601]
          Length = 727

 Score = 39.1 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 51/534 (9%), Positives = 125/534 (23%), Gaps = 26/534 (4%)

Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
           L  L D + ++      +  +          +               DI+     + ++ 
Sbjct: 185 LLSLADLMRLQALQFTPVLALGERDNPLMGALLLRQATLADQLQSARDIVLESPTSARQQ 244

Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
                L+ A   R+  ++ A+ L     + ++  AL      L  +    +     +  +
Sbjct: 245 RLAGMLLCALEMRDHLLASALDLEQLRRQPEQAGALERLRDELLAQ--AGVLERLADALL 302

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
               P S       L +L            +   + + +         L           
Sbjct: 303 LGRKPESQARPRLDLGALEEPAHAGFTPARLVRGLAYRIGHVQDEVGQLVALARGEREPD 362

Query: 476 LRGNKNSY-------DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
           L   +  +                L R         +    +          +   +H  
Sbjct: 363 LALVRVYWQMFVSSTGWGWKPFWGLWRWRAAPLRHAMRAALAIGVGYAVSQLLPWREHAY 422

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL--QNVCLDEHRKLPNLWFEEEGKTLSS 586
             +  ++       +              + CL    +   +      L      + ++ 
Sbjct: 423 WIVLTIIVVLRGSLAQTLERRNERVAGTLLGCLIASALLAADMPHWALLACVTLAQAVAH 482

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES----RLLNFD 642
            F+      + + A  +  +        G T    +E+ +   I   L       L +++
Sbjct: 483 SFTLRRYLFTAVAATVLGLVQAHLLGAGGSTGFVLLERMADTLIGAGLAWAFAYVLPSWE 542

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
              +  L                 + Q        E     A  +   + G       R+
Sbjct: 543 RQQIPALVARTLAAQMRHAREALALGQLQAVDNHPELAWRLARREAYDSLGALVQATARA 602

Query: 703 LRENNIPTIA-----------SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            +E                   + L +L  +           RG+      +      + 
Sbjct: 603 WKEPRAVRPPLAPLERMQAHCYQLLAQLTAVKSMLLLRRGHLRGEDVHAPLQAAAQRIEA 662

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
               +  P PP        +   +  L+      +  R L+L      +   + 
Sbjct: 663 ILSGQDMPAPPEHGADDGLAAEPLPALVETDLTPWLLRRLRLAEGLARQMRAEA 716


>gi|218891112|ref|YP_002439978.1| hypothetical protein PLES_23771 [Pseudomonas aeruginosa LESB58]
 gi|218771337|emb|CAW27104.1| hypothetical protein PLES_23771 [Pseudomonas aeruginosa LESB58]
          Length = 2098

 Score = 39.1 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 51/509 (10%), Positives = 115/509 (22%), Gaps = 31/509 (6%)

Query: 379  RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
            R+  +   ++  ++         V   +      +   AG           L + + A+ 
Sbjct: 1012 RLVAEGLGQRIVMLNDVNRDREPVIRNIREQLEALFAEAGGAQGWERQRERLAARIEALE 1071

Query: 439  KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
               D         H           LS  +   EL+ L       D   L+  +      
Sbjct: 1072 GELDRY-------HQSLHRVDEATGLSYRRLLGELIELEKGSPPLDFPALRQRLAALDIG 1124

Query: 499  QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                           EE+    V L        +PL   +          + +D  +   
Sbjct: 1125 SLARL----------EENCAPLVRLWLPARYEGSPLAQLRAFATDQATLQAFADSLRAFG 1174

Query: 559  TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
                           +    ++     +  +  + T   ++    + +     L    T 
Sbjct: 1175 EAENARQKALDEHPASFE-VDDPTPYRAWLASQVGTLLNLREEQRQRLAHWLPLFRDATP 1233

Query: 619  KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678
                     L     +E +L   D      L           N          L    A 
Sbjct: 1234 GQPSRGDGLLAEAEQIERQLRQLDLEQHAPLLSPALAMLEENN----------LERFQAH 1283

Query: 679  KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738
                  A  +        L+    LR        +    RL  L G    +   +  +  
Sbjct: 1284 ARQVLEARTWLARLNPLRLLRRGRLRRFLREHGEADDDSRLAALLGACDLERQWRPLRRQ 1343

Query: 739  LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798
            L   ++            P+         +     EI+ L            L    +  
Sbjct: 1344 LAALQQSLGLATVATDAGPELTGLAGHASQQL--REIQTLARGLAQAPRAEQLDAVILTG 1401

Query: 799  FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858
             K+  +    G L   +I +  ++        +   +   +     +       ++    
Sbjct: 1402 EKQRFEAL-LGDLDAALIRQAARQLSLDKLKVLADWLGDELLEQLHRAIAGNQSNLPALG 1460

Query: 859  LFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
               +     + ++     + +     +  
Sbjct: 1461 RLREALPQLVAYQRFRGRAGQLEATELEF 1489



 Score = 39.1 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 55/614 (8%), Positives = 136/614 (22%), Gaps = 26/614 (4%)

Query: 99   LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158
                   +++ L    +  + R +                    A     A + A +   
Sbjct: 1107 PPLDFPALRQRLAALDIGSLARLEENCAPLVRLWLPARYEGSPLAQLRAFATDQATLQAF 1166

Query: 159  IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
             ++     E     + +                 + W    V    +     +  L    
Sbjct: 1167 ADSLRAFGEA-ENARQKALDEHPASFEVDDPTPYRAWLASQVGTLLNLREEQRQRLAHWL 1225

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                      P    G         R +  + +    A +L      +         +  
Sbjct: 1226 PLFRDATPGQPSRGDGLLAEAEQIERQLRQL-DLEQHAPLL-SPALAMLEENNLERFQAH 1283

Query: 279  TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                    T+              L     +     + S           +    P    
Sbjct: 1284 ARQVLEARTWLARLNPLRLLRRGRLRRFLREHGEADDDSRLAALLGACDLERQWRPLRRQ 1343

Query: 339  MRNTDILENKIPNIQKCFSDVALIE--ADNEREEAISIAIALRMSLDENKKKSALITADR 396
            +                  ++  +   A  +  E  ++A  L  +    +  + ++T   
Sbjct: 1344 LAALQQSLGLATVATDAGPELTGLAGHASQQLREIQTLARGLAQAPRAEQLDAVILT--- 1400

Query: 397  NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
               +R +  L      +   A   LS      +   L + + +             P   
Sbjct: 1401 GEKQRFEALLGDLDAALIRQAARQLSLDKLKVLADWLGDELLEQLHRAIAGNQSNLPALG 1460

Query: 457  FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                      A         RG     +  +L+ L L R   ++ +              
Sbjct: 1461 RLREALPQLVAYQR-----FRGRAGQLEATELEFLALLRQRQERLDAIPAEELEATVRRM 1515

Query: 517  KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW---TKLTVTCLQNVCLDEHRKLP 573
                  L               +   +     S+++     +     L    +D  R   
Sbjct: 1516 LNREARLGWKQRLEQDNPELLFSQDEARARVASLAEADVQMRALNRELLGKGIDAARLGS 1575

Query: 574  NLWFEEEGKTL---SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630
               +E+  +     S    + IE G+ +   ++  + ++   +    +  K      +  
Sbjct: 1576 RKQWEDVTRLTGKRSRRLREFIELGAELGLMSLRPVWLMNPDLASRVLPLKAGLFDMVIY 1635

Query: 631  LGTLESR-------LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                +         L      ++ G  + + P     +   S   +        E    +
Sbjct: 1636 DEASQMPVEFALPTLYRGRVTVVSGDEKQMPPTAFFSSRVESDEAELFDGEAPDEDADEE 1695

Query: 684  AAHDFEMANGTRHL 697
                +E     R +
Sbjct: 1696 QREAYEDTWNRREI 1709


>gi|108757966|ref|YP_631961.1| non-ribosomal peptide synthetase/polyketide synthase [Myxococcus
            xanthus DK 1622]
 gi|108461846|gb|ABF87031.1| non-ribosomal peptide synthetase/polyketide synthase [Myxococcus
            xanthus DK 1622]
          Length = 14274

 Score = 39.1 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 59/569 (10%), Positives = 145/569 (25%), Gaps = 22/569 (3%)

Query: 213  ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272
             ++      L        +    T +  A             G   L  L+         
Sbjct: 2116 QVVVRVRAQLNTEISLRTLFDAPTVARLAERIESQVQLADAPGVPALVPLERGPSADEGL 2175

Query: 273  TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332
              +     +      +     Y+L   L        DV+ L     E+  R   +  +F+
Sbjct: 2176 AASFAQQRLWFLEQLHPGQAAYNLPAALRLTG--PLDVEALRRTFLEVVRRHEAVRTTFV 2233

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALI 392
              +    +       + P  ++    +  I  D     A   A     +      +   +
Sbjct: 2234 TREGQPAQRIHPAPAEWPLPEEDLRGLEPIARD-----AAVQARMAEEAHRAFDLEKGPL 2288

Query: 393  TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI-FKLNDFMAIATLVK 451
                 L       +    ++  +S G  +   +    + +L  A+       +   ++  
Sbjct: 2289 LRTVLLRTGADAHVLLLCMHHIVSDGWSMG--VLVREVAALYEALSQGHEAALPALSVQY 2346

Query: 452  HPLAKFGFPEKYLSRAKNALELVALR---GNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
               A +             L+    R              +  V          T  P  
Sbjct: 2347 ADYAAWQRRVLEGPALAPQLDWWRSRLEGAPTLELPTDHARPAVRTLRGATHAFTMPPSL 2406

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
             + L    +E    L   ++     L+   + +   C    ++  T+  +  L    ++ 
Sbjct: 2407 VAGLERVGQEQGATLFMVLMAGWQALLARYSGQTDFCVGTPLAHRTRPELEGLIGFFVNT 2466

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                 N+  +     L +   +  E+ +      + +  ++  L     +       +  
Sbjct: 2467 LALRANVDGDPRFDDLVARVRE--ESLAAFANQDVPFDRLVEALGGQRDLSRTPLFQAAF 2524

Query: 629  FI------LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
             +        TL   +++            V      +   L   ++  L+L T +    
Sbjct: 2525 VLQNAPMQPPTLPGMVVDVLRTGTDTARFDVTLLLVERGGRLEGELEYSLDLFTPDAARR 2584

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
               H F+           R +    + + A R    +        +       Q +++  
Sbjct: 2585 MVEH-FQRLLRGVSADAARRISAVPLWSEAERDEVLVAWNDTAAPYPADTTVHQRFMEQA 2643

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            R+           R   +  L+A+    +
Sbjct: 2644 RRTPERVAVTFEGRSLTYAELDARSNQLA 2672


>gi|323359571|ref|YP_004225967.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323275942|dbj|BAJ76087.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 584

 Score = 39.1 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 28/257 (10%), Positives = 66/257 (25%), Gaps = 17/257 (6%)

Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
            + + V  RIA   +   +       ++    L  L    +   +     +         
Sbjct: 330 GVAADVAARIADGADPESIAILYRSHAQSAVVLNALAAQGVAATVLGGRKFFDLPEVRQA 389

Query: 547 NLSISDWTKLTVT--CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS-CIKANAI 603
            +++   +   V    L  V              + G  L   +           +A   
Sbjct: 390 LMALRAASVAPVETGFLATVRDVLRGVGLTDEPPQAGGALRDGWEARAALLRLAEEAAPG 449

Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
             +   T  +           + T+ +     ++ L +D + L G++EG+ P + A +  
Sbjct: 450 TDLRSFTDDLQARARDQHEPATRTVTLSTLHAAKGLEWDHVFLIGVSEGLLPISYATSFE 509

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
                +                    +    R L  + +          SR+L+ +    
Sbjct: 510 AVDEERRLA--------------YVGVTRAARSLSVSWARGRGRADREPSRFLREIGSGS 555

Query: 724 GTDFFDNLKKRGQCYLD 740
                   +  G     
Sbjct: 556 LRSDDGLPRHAGSSRRA 572


>gi|86741618|ref|YP_482018.1| beta-ketoacyl synthase [Frankia sp. CcI3]
 gi|86568480|gb|ABD12289.1| beta-ketoacyl synthase [Frankia sp. CcI3]
          Length = 2560

 Score = 39.1 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 44/591 (7%), Positives = 118/591 (19%), Gaps = 20/591 (3%)

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
           +L +L D           +  + +   GR   +           +R         P   +
Sbjct: 287 ALKRLADAERDGDRIYAVIRGLGSSSDGRFKSVYAPRAEGQVRALRRAYADAGVSPASVE 346

Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
            F   A   A  +  E  ++   L  +     + +      +    +             
Sbjct: 347 LFEAHATGTAVGDATELSALGAVLAEAGARPGRAAIGSVKSQIGHTKGAAGAASLIKLSL 406

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
                 L  T++       L                      +        R   A  + 
Sbjct: 407 SLYNRVLPPTINVREPNPALAQEGSPFYLSTRTR-------PWVLDPDVGRRRAAASAMG 459

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
               N +        +   D        TH                + LV    +     
Sbjct: 460 FGGTNFHVVLEETPDTARPDADKRAARATHRAVRAHLWHAATPAELLDLVRGQAEPNGDT 519

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
               +         + ++  +L    ++ +           W    G       ++    
Sbjct: 520 GIPGSAARVGFVARTGAEAERLRAIAIEQLAARAD---AAEWSHPAGVHYRRQAAEQPRV 576

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
           G        +++D+            +   ++     G     L     +      +   
Sbjct: 577 GVVFAGQGSQYVDMGLTAAVEIPPVREAFDAANATFAGAE---LTLARAVFPPPSFDPGD 633

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
             +   N   +   Q  +   +  ++                 +   S  E      A  
Sbjct: 634 RADHEMNLTRTEYAQPAIGALSVGQF-----RFLRELGLRPVSLLGHSFGELTALWAAGS 688

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
                           +    +   D          +          P        +  +
Sbjct: 689 LADADFFRLARRRGQAMAPPDEPGFDPGTMAAVRADRDAVAELLTAHPDVVVCNHNAPDQ 748

Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834
           +      P           + +   +         +L  + + +         T   +  
Sbjct: 749 VVVGGPTPAVEEFVTAATANGLDARRISVAAAFHTSLVGHAVDDFAAAV--DVTEIGSPA 806

Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
           +    ++   +    P  +             F+   + + +    + V I
Sbjct: 807 VPVHANTAGARYGDDPAENRRVLTRQLGNPVEFVAGLQALHADGATVVVEI 857


>gi|320104301|ref|YP_004179892.1| ASPIC/UnbV domain-containing protein [Isosphaera pallida ATCC
           43644]
 gi|319751583|gb|ADV63343.1| ASPIC/UnbV domain protein [Isosphaera pallida ATCC 43644]
          Length = 1007

 Score = 39.1 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 55/518 (10%), Positives = 116/518 (22%), Gaps = 24/518 (4%)

Query: 178 GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-EAEHLMKGTKGPIIIAGST 236
              W++ A FL +        L   +A+     +  L  A  A    +       +A   
Sbjct: 11  SRRWMVMATFLLVGVVLLVGWLQWRSAADAALAREQLAEARRATLARRYDFARTRLAELL 70

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-THPQYS 295
            S           A +  G   L          +W+ I   ++               + 
Sbjct: 71  DS-GRGDSNTRAEALYWQGVCWLETGKPGEAVEVWSVIGPGTSEWHHRAIVRRADVLIHR 129

Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI--PNIQ 353
           L +  +        +         +     V +K +      D     +       P+  
Sbjct: 130 LGRFEEADGALALVLGPDHARGGPLAEALEVRTKLWRYQGRLDELAEVVRRVWWACPDPA 189

Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
                +  +E D        +  AL  +   N+    +     NLA           +  
Sbjct: 190 DALRGLWRLETDPFP--LDGVRTALEQARALNESDPGVRLGLANLATYEGRFEEALALLE 247

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
            +    P    +  + L              A+  L           +            
Sbjct: 248 LLREQRPEQPAIARAELRLARAWDRPDLAGPALQRL--------KPTDLSWLETLELNAW 299

Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
           +  R    + + +   S +L+               +R   E +      +  + +    
Sbjct: 300 LRERTGGTTAERIAAWSALLELAPKHPQALERLAELAR--TEGRGEEADRLRRLKREADD 357

Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE--EEGKTLSSLFSKI 591
                    +        DW  L     Q     E      L       G++L +    +
Sbjct: 358 AKERYRALLAEPIPPPRRDWPALAEVAGQLARPFETAAWQALVKHGPHAGESLRAATGSL 417

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
           I+      A           L     V     +   +            F+ +       
Sbjct: 418 ID-----PATPRGNTPTPRTLAALIPVAAARPEPPGVDDPADPFGPRPVFEDVASAAGLA 472

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
            V+    +    L   M   + L   +       +  +
Sbjct: 473 FVFDPGHSGARQLPETMSGGVGLIDFDNDGWLDVYAVQ 510



 Score = 38.0 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 47/460 (10%), Positives = 89/460 (19%), Gaps = 21/460 (4%)

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
            AL  E+               ++     L++           AL       L  G  G 
Sbjct: 40  AALAREQLAEARRATLARRYDFARTRLAELLDSGRGDSNTRAEALYWQGVCWLETGKPGE 99

Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
            +   S      +      +    +  I   G       A+   +               
Sbjct: 100 AVEVWSVIGPGTSEWHHRAIVRRADVLIHRLGRFEEADGALALVLGPDHARGGPLAEALE 159

Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR---SMVISKSFLPPDTSDMRNTDILE 346
              +    +       +                R    +      L    + +     L 
Sbjct: 160 VRTKLWRYQGRLDELAEVVRRVWWACPDPADALRGLWRLETDPFPLDGVRTALEQARALN 219

Query: 347 NKIPNIQKCFSDVALIE------------ADNEREEAISIAI---ALRMSLDENKKKSAL 391
              P ++   +++A  E               +R E  +IA     L  + D        
Sbjct: 220 ESDPGVRLGLANLATYEGRFEEALALLELLREQRPEQPAIARAELRLARAWDRPDLAGPA 279

Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
           +   +         L       + + G         S L  L  A         +A L +
Sbjct: 280 LQRLKPTDLSWLETLELNAWLRERTGGTTAERIAAWSALLEL--APKHPQALERLAELAR 337

Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL-VLDRIATQKNNTHVPHWQS 510
                         + +        R           +    L  +A Q           
Sbjct: 338 TEGRGEEADRLRRLKREADDAKERYRALLAEPIPPPRRDWPALAEVAGQLARPFETAAWQ 397

Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            L +        L       I P                I            +   D   
Sbjct: 398 ALVKHGPHAGESLRAATGSLIDPATPRGNTPTPRTLAALIPVAAARPEPPGVDDPADPFG 457

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
             P          L+ +F         +       + +I 
Sbjct: 458 PRPVFEDVASAAGLAFVFDPGHSGARQLPETMSGGVGLID 497


>gi|295835438|ref|ZP_06822371.1| helicase [Streptomyces sp. SPB74]
 gi|295825492|gb|EDY43404.2| helicase [Streptomyces sp. SPB74]
          Length = 1741

 Score = 39.1 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 60/617 (9%), Positives = 122/617 (19%), Gaps = 28/617 (4%)

Query: 174  NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233
             +     + +               L  L A+  V     + RA  E L       I   
Sbjct: 892  RDTGDQMYQIQQRAWNKVITAIDALLTYLRANPDVAQDSDVGRAVLESLRDRASVHIARM 951

Query: 234  GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293
             +T ++  T  L+  +       +   G                     +     +  P 
Sbjct: 952  RTTSTMGDTIDLLERIRAAAAAEVPAAGPVPAAEVPAAGLEPAAGLEPFAVEEPSAAGPV 1011

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
             +       L+   E        +          +   +P         +      P+  
Sbjct: 1012 PAAEVPAAGLEPAAEVPAAGVPAAGLEPAVEEPSAAGPVPAAEVPAAVPEPAAELEPSAV 1071

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
            +  S V   E  +  EE  +  +            +A    +        +        +
Sbjct: 1072 EEPSAV---EEPSAAEEPSAAEVPAAEPPVVAGPGAA-ADPEPAAGALAVVGPPAVVEPV 1127

Query: 414  DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
              +A   L     ++   S   A            +   P+        + + A      
Sbjct: 1128 AGAARDSLGIAPQTARTPSSEEAPVAEEPQQLALVIPVVPVFPQVDEPTFEAAAARTAAA 1187

Query: 474  VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
            V             L             + H            +                
Sbjct: 1188 VDALRTLWRIGPAAL---------GFPQDVHDVIRAEWQRAGREAAVRDQDQRGQYAGAF 1238

Query: 534  LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
                   +NS   +  +    +  ++  + +  ++         E   +      + + E
Sbjct: 1239 ASAQTEVENSNAPDADVLALAEEELSPAEPIATEDEAARGESRLEATEEPELVAEADLAE 1298

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
             G      A+E I  +   ++                        L+          E +
Sbjct: 1299 RGPATIDQAVEAIRQLRADLEQSLPGDPAADD-----------NQLDDPLARFITALEQL 1347

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
             P+                 L   E+    AA      NG                +   
Sbjct: 1348 RPEVEQPAGEQPNPELGVEGLPELEEAFVAAARHEREFNGAPE----WRQLREVWQSTQR 1403

Query: 714  RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
             W     VL           R Q  L                R         +  +    
Sbjct: 1404 VWENARNVLARYGADLATDIRWQGMLRTVGIRAAGAVARLSNRLADRLSKAGRHDSPGHR 1463

Query: 774  EIKQLINDPYAVYARRI 790
             +  L        AR  
Sbjct: 1464 ALIGLSRVAQNFAARLR 1480


>gi|315501661|ref|YP_004080548.1| glutamine--scyllo-inositol transaminase [Micromonospora sp. L5]
 gi|315408280|gb|ADU06397.1| Glutamine--scyllo-inositol transaminase [Micromonospora sp. L5]
          Length = 666

 Score = 39.1 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 38/618 (6%), Positives = 124/618 (20%), Gaps = 29/618 (4%)

Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
           +  ED  R     +    R      S     +                            
Sbjct: 17  VTVEDWPRWPETDDSTIRRVGTTFLSGRLAVSGARSRWRSRNVAAAERIADTVGRRHAIL 76

Query: 365 DNEREEAISIAIALR-----MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
                 AI +A+         ++                   +         +  +    
Sbjct: 77  TTSGSSAIVVALQAAGIGPGDTVLMPATTWVSCATAVMRVGAMPAFFDGTADSPCLIGAA 136

Query: 420 PLSTTLHSSILTSLLN-----AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
           P  +      +          A+        +     H         + +    +   + 
Sbjct: 137 PDVSPAAVLGIHLYAQHYDVGALRAAYPSAILIEDASHSHFSAVDDGRRVGTLGDISIMS 196

Query: 475 ALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                  +     +       +  R+ +   ++      +  +  ++    LL+      
Sbjct: 197 LQATKILACGEGGVVLTDDPELAARMESLVMDSRRRAAVTARTATNELEPALLMHGANHA 256

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
           ++              +   +  +      +  +     R              +  F  
Sbjct: 257 LSEASAALLLDQLERFDDQAARRSDAAHRFVDRMSDAGWRVFAA-----ASALKTGNFYG 311

Query: 591 IIETGSCIKANAIEWIDII--TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
           +       + +   +I+ +     +  +TV P + +          +   +         
Sbjct: 312 MAVEVPDARGDRQTFIEQVVTDAGLSLDTVYPPVPEGPLFRPFSVKQYERIAHHAPPTPV 371

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
                       +      + +   L  A      +A   +       ++ +   R +  
Sbjct: 372 ARRWHERHVVVPHHAFLAGLDNIDRLADAMIGRPVSARPVQARPTVDVVVISGGTRPSLT 431

Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW--------TRKLDYTTKQPHYKRPKPF 760
             + S   QR+        + +L   G+               +L         +  +  
Sbjct: 432 AALDSVRAQRVDANVRITVWLDLAADGERPAWLDDAVRGLPVAELRARGGVLPAQPFERI 491

Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
             L       +  +    ++D     A  +  L            + R  +  +     +
Sbjct: 492 SALRQLAAGRATGDFVAFLDDDNVWDADHLAMLLAAARSGFPAVHSWRRLVGEDGKDAPV 551

Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
           +                 +++    +     +          +     +     Q    +
Sbjct: 552 RAFPWLPAGPAADERLAAMEAAGVMKPGDSVVRDRADAGMVDMGEWLFDRVLLSQLRFGR 611

Query: 881 IFVNIPAKMAIESIGIHL 898
                     +    I L
Sbjct: 612 SRTEREVAERLGEDDIIL 629


>gi|218665145|ref|YP_002425662.1| GTP-binding protein [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218517358|gb|ACK77944.1| GTP-binding protein [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 875

 Score = 39.1 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 59/571 (10%), Positives = 136/571 (23%), Gaps = 29/571 (5%)

Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
                 +  + + +    A +++  L   L  + K              +   +     +
Sbjct: 162 SALPQSMESLGSRHGDAVASAVSRQLSELLTASGKPR-------GDYSALLSAIDVLQND 214

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNA 470
           +  + G   S       L  L  A  +       A L     A           +     
Sbjct: 215 MAETRGRIASYREQVDELGLLRAAHHQDIQNKPWAQLRAQAEAVQHRLKTALECAAQLKT 274

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
           LE    R    +  + + +                       +E        L +     
Sbjct: 275 LENELGRLRSQAELLANHQKQHKMAEEEAARIALDLERCKTTAEAVDARIEGLREADRAA 334

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                T +  +        I    +  V    ++   + R       E    T  +  + 
Sbjct: 335 KATWETAREQEQRARQMQEIHAQQQEAVDLRASLGEKQARLEQAQARETRLATAGAWLNS 394

Query: 591 IIETGSCIKANAIEWIDIITRLID----GETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
                  + A  +    I    I        +  ++E    + I  T       +     
Sbjct: 395 QHLDSEGLAALRVLEQQIRENQIRLERFATKMHYRLESGIQMHIGSTTIDGEGEWSISKP 454

Query: 647 GGLNEGVWPKNT-AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705
             +          +        +         E  +  A    E  +    L  T  ++ 
Sbjct: 455 VQIRIPDVGTLELSPGEEALSNLDQQQAALQHEWTMKLAESHVESLSEAERLWAT--IQR 512

Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765
               +   R++ + L   G +    L   G+  L +  +   +T  P             
Sbjct: 513 EQAQSEQDRFMVKSLAPEGIEALARLIATGRERLGYLEQSLSSTTLPTETVSLDEARENR 572

Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT--DRGTLFHNIIT--ELIK 821
           +     +    +L++      A  + ++  +            +   LF   +    L+ 
Sbjct: 573 EMAEQHWRLQTELLHAAETEQAGLVTEMQMLQANHAKQQALIDETAPLFPQWMESTRLLD 632

Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPH--------IDIIWRHLFHKISHSFLEHEEK 873
            +   N  + N L +Q+     E                +   R    +++    + E  
Sbjct: 633 AQQGDNLLQQNRLREQLSREDPEMLQQDADRYLKSAEIAETRHRERAERMARLEAQLETS 692

Query: 874 IQSSIEKIFVNIPAKMAIESIGIH-LTGFAD 903
               +E+        +A +      L   AD
Sbjct: 693 NAQGLEERLAEQETDLAAKERRARQLRVRAD 723


>gi|297162601|gb|ADI12313.1| modular polyketide synthase [Streptomyces bingchenggensis BCW-1]
          Length = 4668

 Score = 39.1 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 63/608 (10%), Positives = 132/608 (21%), Gaps = 31/608 (5%)

Query: 150  KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
              LA++   ++ E      L +       +   L  + L         R      S+ + 
Sbjct: 2600 DALAELRRRLDEEGVPARRLSSAFASHSPLMAPLRGELLDALDGVRGTRARTPLYSTVLA 2659

Query: 210  YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
              IA  R +A++     + P+  A +          +  + +      V       +  A
Sbjct: 2660 EPIAGDRLDADYWYANLRQPVRFADT----------VRRMLDDGYRHFVELSPHPSLGPA 2709

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
            I +   E      S  +            LL  L   R          + ++        
Sbjct: 2710 IESVAAEAGVEAVSVGSLRRD--DGGRDGLLRQLG--RLYGAGHTPDWSALFPAGRRADL 2765

Query: 330  SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM-------SL 382
                        +                  L  +D          I LR          
Sbjct: 2766 PTYAFARERHWLSAAPAPASGPGTSPLVGTHLEASDEPDRHLFQTDIDLRDGRFGYLSDH 2825

Query: 383  DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                +      A   +A      L   G  + ++     +     +     L  + +  +
Sbjct: 2826 RVAGEVWLPAAAFLEMALAAASALQDGGGPVRLAEVEFEAPLRLVADAPVRLQLVLRPEE 2885

Query: 443  FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
                +  +               R    L               +  + + DR     + 
Sbjct: 2886 GGVRSFTIAS--TALNERRPTWIRHVRGLVAHTDDEPG---AAGERLAALRDRCVEAVDM 2940

Query: 503  THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
              V    + L  +       L +        L        S                 L 
Sbjct: 2941 AGVHAGLAALGIDYGPAFRRLTEGRRSAAAALGRLAELPASGHLLHPALLDAAFQTAALP 3000

Query: 563  NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
                     +P          L +  +    +   +  +A+     +    +   +  + 
Sbjct: 3001 GDAPAGRAFVPAGVGRLRFTGLRTAPAWAACSLRAVDGDAVTLDLRLWDEREQLVLGIEG 3060

Query: 623  EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
             + + L  L  L+  L     L      E     +       S V  +   L     ++ 
Sbjct: 3061 FRLAPLAGLSPLDGSLFETRWLPRSAARELPTRGSWLILSDESGVGAALSGLLGPAPHVV 3120

Query: 683  QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
                D   A             +   P   +R L+     G  +    L       +D  
Sbjct: 3121 ARRGDSFAAEAPGRYRL-----DPLNPEHLARLLEEAFPEGPPERVVQLSALDAPAIDSA 3175

Query: 743  RKLDYTTK 750
                   +
Sbjct: 3176 EAATRVAR 3183


>gi|167517193|ref|XP_001742937.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778036|gb|EDQ91651.1| predicted protein [Monosiga brevicollis MX1]
          Length = 700

 Score = 39.1 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 48/183 (26%), Gaps = 16/183 (8%)

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                +       +R Q  L    K +   + P    P P P ++      S +      
Sbjct: 309 QAQAPSQPAVAPVRRKQPALPQAAK-EPAPRAPVAASPSPVPDVQNFSLPESPTRTVTPA 367

Query: 780 NDPYA-----VYARRILKLDFIPHFKKDPDRTDRGT--------LFHNIITELIKKRINK 826
                       A R  +       ++  ++  RG                 L K+  ++
Sbjct: 368 QATPRTTTAGFDADRDARERAEQEARERLEKEARGRVEQEARERAEQEARERLEKEARDR 427

Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE-EKIQSSIEKIFVNI 885
              E    +++      EKE      +   R    K +    E E  +   +  +     
Sbjct: 428 AEQEARERLEKEARERLEKEA-RERAEQEARERLEKEARERAEQEARERLENEARERAEQ 486

Query: 886 PAK 888
            A+
Sbjct: 487 EAR 489


>gi|146280177|ref|YP_001170334.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
            17025]
 gi|145558418|gb|ABP73029.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodobacter sphaeroides ATCC 17025]
          Length = 1477

 Score = 39.1 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 59/557 (10%), Positives = 128/557 (22%), Gaps = 43/557 (7%)

Query: 277  KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336
             +     + T     PQ         L+           +   +  RS            
Sbjct: 909  AAAQHLLALTPAPDDPQ-VFRVPDWPLETLDGQPVGEAALPPALVRRSGEDQHDLRYAVR 967

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396
                    L      +        ++ +  +  +A ++A  LR   DE+           
Sbjct: 968  LPEGGRRFLSINAAPLPPAPHGAEIVMSVTDITDAEAVADRLRQLADEDPLTGLANRRAL 1027

Query: 397  NLARRVKLELTRFGINI---------DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
            + A   +L        +           S    +       +L  +   +        + 
Sbjct: 1028 SAALEARLAAAAGPAPLALIMLDIDNFKSVNDTMRHEAGDRVLCIVAERLRACAGREDLL 1087

Query: 448  TLVKHP---LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI-------- 496
              +      L   G   +        L     R  +     + L +     +        
Sbjct: 1088 ARLGGDEFMLLASGLDREAAVVLAERLRDAIARPIRIDTQPIRLTASAGVALCPDQGTVM 1147

Query: 497  ------------ATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL-QCITPLVTYKTNKNS 543
                        A ++   +     SR     +E    +   +    +  L      + S
Sbjct: 1148 PLLMTGADIALHAAKRAGRNRTILLSRELFAAEERRSAITRALDGPALDRLRLVYQPQFS 1207

Query: 544  TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
              GN  ++    L       +      +   L  E                       A 
Sbjct: 1208 LVGNGGLAGVEALLRWTDPVLGDVCPDEFIPLAEEVGLIVTIDDRVIAQAARQLRHWAAC 1267

Query: 604  EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
             W   ++  +  +++  +     TL +L             I   L E      ++    
Sbjct: 1268 GWYPRLSINVSAQSLSRREFAQDTLQLLAAERIDPRQ----ITLELTETSLLAPSSAEQN 1323

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA--SRWLQRLLV 721
            ++ + +S + L   +   G A+  +        +   RS            SR L R ++
Sbjct: 1324 IASLRRSGIGLAIDDYGTGYASLSYLHRLRATEIKIDRSFIAGLTSENPRHSRTLIRAII 1383

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYT--TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
                    +    G         L      +   +    P    E + R      ++   
Sbjct: 1384 GLAGTLGMSTTAEGVETDAQREWLRQAGCDRIQGHLLSLPLARDELEARFLEAPHLED-A 1442

Query: 780  NDPYAVYARRILKLDFI 796
            + P     R +L     
Sbjct: 1443 HAPLPHPHRHLLDDPAP 1459


>gi|158314552|ref|YP_001507060.1| hypothetical protein Franean1_2728 [Frankia sp. EAN1pec]
 gi|158109957|gb|ABW12154.1| conserved hypothetical protein [Frankia sp. EAN1pec]
          Length = 1096

 Score = 39.1 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 62/744 (8%), Positives = 146/744 (19%), Gaps = 50/744 (6%)

Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
                 + +    S      L   L      +E                        A F
Sbjct: 2   FGGESPTAVLTDESATEVPGLFDELYATPKRLEDLGAPLRRFAEATGTDGDGMRQAFAFF 61

Query: 188 L-----------KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST 236
           L           +    ++ E     + S+  G  +      A        G I +  S 
Sbjct: 62  LTAHGYAPHLVPECLRAFFAEIAAHTDVSAGQGDLMQAEALLARAERADAGGVIGLLDSA 121

Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS--SNTTYSTHPQY 294
             +   A     +A+      V                 E  +        +        
Sbjct: 122 VRMLRRAVANFGIADSGRFNAVGLLCLALRWRYRLTGRGEDLSEGIDLLRASISEWPDDP 181

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
               L   L +                 R   + +  L    +      + +        
Sbjct: 182 RRGALHAELSVALRLRAERIGD---RADRDEAVEQGRLAVGKAQDHQWVVADALAALGAA 238

Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
             +  A I + ++ EEA+++A           +   +   D N        L+       
Sbjct: 239 LLTRAAWILSPDDVEEAVAVAR----------QGIVVAAPDLNRLGYALERLSVALHTRF 288

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
            + G          +    + A  +     A+    +  L          + +   L+  
Sbjct: 289 DTFGDVADLVESVEVARRCVEA-TEDASLDAVGR--RSQLCFCLLDLAQTTGSTELLDEA 345

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ----- 529
             +G      +               +     +  +R     +       + +       
Sbjct: 346 IAQGRAGINALTAFHPRAGLLWVNLSDCYRTHYEVTRSVTAVEAAVHAAQEALAVTSAGH 405

Query: 530 ------CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
                                   + +          L      E    P +        
Sbjct: 406 PDHPKALFALASALWWQFERMGDTVDLDAALDYARQALDA-TAYERLDYPKIAGLLGQLA 464

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
            ++     I+  +   A     +  I        +      ++ L        +L + D 
Sbjct: 465 AAAAGPASIDAFAEAVAAGRSAVAGIPDGHPDLPLYQS-SLAAVLRRRADAIGQLSDLDE 523

Query: 644 LILGGLNEGVWPKNTAKN-----PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
            I               +       L   ++    +    + +  + H F  A  T   +
Sbjct: 524 SISLDRAAADQVPPGRPDRARLLCNLGNTLRLRFRVTGDNEDLRDSLHFFRTALNTGTAL 583

Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758
                      +   R                        +     L    +    + P 
Sbjct: 584 ---PSTRLQAASSLGRLAGETGQWAIAADGYATAIGLLPVVSAPTLLRTDQEFVLSRLPG 640

Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
                 A        E      D                  +      + G         
Sbjct: 641 LAADAAACFLRAGMPEQAVQRWDEGRGVLLAQALGMRSDLSRLADHHPEVGRRVGAAWGR 700

Query: 819 LIKKRINKNTPEINHLMKQIIDSH 842
            ++ +  + + +    +K++I   
Sbjct: 701 ALRNQEPRPSTDAASDLKELIQEV 724


>gi|197120532|ref|YP_002132483.1| hypothetical protein AnaeK_0111 [Anaeromyxobacter sp. K]
 gi|196170381|gb|ACG71354.1| conserved hypothetical protein [Anaeromyxobacter sp. K]
          Length = 309

 Score = 39.1 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/285 (9%), Positives = 65/285 (22%), Gaps = 58/285 (20%)

Query: 768  RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP------------DRTDRGTLFHNI 815
             ++S S  ++      A +                P                 G++ H  
Sbjct: 8    FSWSKSRHEKFAECRRAYFYAYYGSWGGWEAAHGTPVRELYVLKKLSSRWQWAGSVVHGA 67

Query: 816  ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR------------------ 857
            + +++       T      +          E         WR                  
Sbjct: 68   LKQMLSAARVSGTFWPAEKLLDRTRRKARAEWASSRDKSYWREASRITGLVEHEYGEPVS 127

Query: 858  -HLFHKISHSFL-----------EHEEKIQSSIEKIFVNIPAK-MAIESIGIHLTGFADR 904
               + ++    +             E    +  ++            E   I +      
Sbjct: 128  DADWKRLFDQVVDGGLRGFYASEAFEAIRATPRDRWLSVDELDAWDFEGTKIWV-----A 182

Query: 905  ID---LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
            +D       G V I D+KTG     +        QL + +   +   +       V  L 
Sbjct: 183  VDFAYRDAEGRVQILDWKTGRERTVD------HTQLGIYSLYAQRK-WGAAPDAVVGGLV 235

Query: 962  YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006
            Y+   +      ++      +     +    ++  +   L +  +
Sbjct: 236  YLAAPEDGGAGRVSVAVDPAALSACQDAMRGSIASMRAALADPAR 280


>gi|70734090|ref|YP_257730.1| hypothetical protein PFL_0588 [Pseudomonas fluorescens Pf-5]
 gi|68348389|gb|AAY95995.1| Domain of unknown function (DUF404) family [Pseudomonas fluorescens
           Pf-5]
          Length = 828

 Score = 39.1 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 66/700 (9%), Positives = 156/700 (22%), Gaps = 55/700 (7%)

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA---SKYWTERLVELNASSPVGY 210
           D++D        + +L      +    W    + L+ +        + L+          
Sbjct: 3   DLLDRYPLTAGTYHELLD-DQGQVRAHWQRLLEQLQRSSPGQLAQRQALLTRQIHENGVT 61

Query: 211 QIALMR---AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                    A+    +      I              +             L G    I 
Sbjct: 62  YNVYADPKGADRPWELDLLPHVIAADEWQLLST---GIAQRARLLNAVLADLYGPQRLIR 118

Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
             +         N           P+ +   L   +D+ R    R    ++     S   
Sbjct: 119 EGLLPAELVFGHNNFLWPCQGICPPEQTFLHLY-AVDLARSPDGRWWVTADRTQAPSGAG 177

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
                    S        + ++ ++   F  +     +    +A   + A  + L    +
Sbjct: 178 YALENRMSVSRAFPDLYRDLQVQHLAGFFRTLQ----ETLARQAPRDSEAPLVVLLTPGR 233

Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLST----TLHSSILTSLLNAIFKLNDF 443
            +        LAR++   L   G      A + L T        +I+  L +      + 
Sbjct: 234 FNESYFEHLYLARQLGYPLVEGGDLTVRDATVYLKTLSGLRRVHAIMRRLDDDFCDPLEL 293

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
              + L    L       + L        ++   G         L  +    +  +    
Sbjct: 294 RTDSALGVPGLLDAVRQGRVLVANALGSGVLESPGLLGF-----LPKISQFLLGEELLLP 348

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT---- 559
            +  W    +   ++    L D +++      ++                 +        
Sbjct: 349 SIATWWCGEAPVLQQALEKLPDLLVKPAFASQSFTPVLGRDLDPEQRRQLAERMRARPYA 408

Query: 560 -CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
              Q +       +      +       +    + +    +        +  +       
Sbjct: 409 YVAQELPQLSQAPVWQAENGQLQPRAIGMRVYAVASEDGYRVLPGGLTRVAAQAGAEVVS 468

Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGL-----NEGVWPKNTAKNPFLSRVMQSDLN 673
             +   S   ++LG        +      G+      +   P    +N F         +
Sbjct: 469 MQRGGASKDTWVLGERAPSGEQWKAQRTIGVYDLVRRDPYLPSRVVENLFWFGRYCERCD 528

Query: 674 LKTAEKYIGQAAH----DFEMANGTRHL---------------IYTRSLRENNIPTIASR 714
                  I  A +    D +       L                   +L   +       
Sbjct: 529 DSARLLRIMLARYVDGDDPQALLAAVDLGESLMLLPDEGELPERLLAALLGEDWSFSLRS 588

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH--YKRPKPFPPLEAQPRTYSF 772
            LQRL            ++  Q  ++  R+            +       L       S 
Sbjct: 589 NLQRLQWAASQVRGKLSRENWQALVELQREAQELDTPEPDFAELLDFLNRLVMSLAALSG 648

Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
             +  +  D    +     +++ +           RGT  
Sbjct: 649 FALDDMTRDEGWRFLMIGRRIERLQFLSSSLAAFLRGTAA 688


>gi|307730046|ref|YP_003907270.1| exodeoxyribonuclease V subunit gamma [Burkholderia sp. CCGE1003]
 gi|307584581|gb|ADN57979.1| exodeoxyribonuclease V, gamma subunit [Burkholderia sp. CCGE1003]
          Length = 1125

 Score = 39.1 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 53/512 (10%), Positives = 116/512 (22%), Gaps = 30/512 (5%)

Query: 103  VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
            +  + +  +           L D I  +              A  +   LA+ +D     
Sbjct: 578  LDTLAQCFDGGVEFAESLAALRDAIDKMSDAMQAGAREVTMPAAVVRGALAEALDDPARG 637

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
               W  +                  L +                   +  A  R   +  
Sbjct: 638  GVPWGSVTFSSLTSLRGLPYRVVCLLGMDDGVLPSLARADEFDLMAAFGKAGDRQRRDDE 697

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
                   ++ A S   I  T R +   A  P  A+V   LD     +     +       
Sbjct: 698  RNLFLDLLLAARSRLFIAYTGRSIRDNAPLPPAALVDELLDYLAQVSAGEGASPAQVEEA 757

Query: 283  SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342
                    HP  + A          E       +      R+ + +    P   +     
Sbjct: 758  RRAFIV-DHPLQAFAA---------EYFAAQPELFTYDADRAELATLLAAPQPKNAAPFF 807

Query: 343  DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402
            +       +    F D               +      +    + +  ++ +D       
Sbjct: 808  EEPLPPEESAPVAFDD--------------FVRFWRHPARALLRDRLGIVLSDAQGE--- 850

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
               L      +D +    L+  L   +L +       + + +         L        
Sbjct: 851  --LLDTEPFELDYAGRDALAERLLPVLLDTDSEDGELVFERVRRVAEASPELPGGATGAV 908

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
            + +R   AL  +A    +     ++    VLD      +   +        +E    A  
Sbjct: 909  WRARELGALRQLADSVRREVASGVERLPFVLDVAPRWPDRAELAGELFGRHDEALREAAE 968

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
                +   +  L              +  D+    +  L             +W      
Sbjct: 969  APLQLHGTLNLLTGSGQVIFRYAKP-TARDYLSAWLAHLAYCAALPDGPRRTVWHGSGES 1027

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
               +  +  ++  + + A  I    +  R   
Sbjct: 1028 FELAPVAAPLDELAPLAALFIAGRRLPLRFFP 1059


>gi|293358010|ref|XP_238278.5| PREDICTED: spectrin, beta, non-erythrocytic 5 [Rattus norvegicus]
          Length = 3539

 Score = 38.7 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 49/529 (9%), Positives = 119/529 (22%), Gaps = 24/529 (4%)

Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
             L   +    W          S+   ++L++L     +  +     +  E  +   +  
Sbjct: 354 EGLGPAELAQCWAELERVEASRSQAMQQKLLQLERLDTLARRFQCKASHRESFLNDAEQM 413

Query: 230 IIIAGSTGSIPAT-ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288
           +  A ++ + PAT       +     G +           A+             S    
Sbjct: 414 LEQARASLTDPATVEAATQRLNMLEAGLL----PQEGRFQALGEMADILQQEEYHSWADV 469

Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348
           +   +    +    L   +E+ K L      +     V + +    +   +  +   E +
Sbjct: 470 ACRQKEITGRWRRLLQCLQEERKCLAGTQAVLSLLQEVEAATDQLGELQGLAGSTACEPQ 529

Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408
           +  +        L+EA             L     +                    EL  
Sbjct: 530 LAEVVLLLQSHDLLEAQVSAHRTHV--NRLVHQTAQLDSSQGTSVQTLQTKALALDELHH 587

Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
             +++  +    L  TL  +                  A L +H                
Sbjct: 588 SVVSLVRTRRTLLEQTLQRAQFLHSCE--------EEEAWLQEHRQLVEKAAPGRDLTQI 639

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
                   +      ++   +++ +D +   +N +           E  E    +   + 
Sbjct: 640 A---NALQKHKALETELHRHQAVCIDLMQRGRNLSVKEPLTQPDPLERAEAVQGIWQLLW 696

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                       + +       SD  +     LQ     E         + + + L    
Sbjct: 697 T--GAARRRTRLQTALLVGQYFSDLAEAASWLLQRQKQLESASYGK--DQSDSEALLQQH 752

Query: 589 SKIIETGSCIKANAIEWIDIITRLID--GETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
            ++ +       +  E  D          + V     +               +   L  
Sbjct: 753 LRLEQGLCAFAVDLRELEDQARAAAALVSQMVHTGTREGPRHVPPTPNVRSPQSIGVLSA 812

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
            GL                    + L  +   +   +        +  R
Sbjct: 813 LGLPGEDPRTAPQAEYDFHFDSNAILQAQADLRQNYENLRALAKLHRAR 861


>gi|297564472|ref|YP_003683445.1| Beta-galactosidase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296848921|gb|ADH70939.1| Beta-galactosidase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 667

 Score = 38.7 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 42/506 (8%), Positives = 98/506 (19%), Gaps = 38/506 (7%)

Query: 435 NAIFKLNDFMAIATLVK-----HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
            A+ +         L          +                 +   R N         +
Sbjct: 126 RALAERYSGHPALRLWHVHNEYGTWSHSEHTAGAFRDWLRGRHVDLDRLNAAWTTAFWSQ 185

Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-------KN 542
                        T      + + +  + L+  ++DH L     L   + +         
Sbjct: 186 HYSEWEQIQPPRATQYLPNPAHVLDFRRFLSDAMLDHFLSQRDVLRAVRPDVPVTTNLAF 245

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                +    W +       +   D   +              S   ++   G       
Sbjct: 246 GDWVPVDPWRWAEHLDLVAVDDYPDRTGQGGAEQTAFAADLARSWAERVPGPGRPWLLME 305

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFIL-GTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                  T  +       +  + S   +  G+  +    +     G           A  
Sbjct: 306 QAAGVTYTGEVTRPKAPGETARHSLAHVARGSRGAMFFQWRASRGGAEQWHSGMVPHAGP 365

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL---QR 718
                    +L          + A     A  T       +L   ++P     +L   ++
Sbjct: 366 DSRIFREVCELGSVLPRVAEARDADVVADAALTWDPECWWALGSPSLPARGVDYLEAARQ 425

Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778
           +  +           R    L     L                    +            
Sbjct: 426 VHRVLWRSGRTVDMVRPDRDLPRVPLLVVPALYLLSDEAAERLARYTEDGGTLVVTFLSG 485

Query: 779 INDP--------YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830
             DP        Y    R +L +  +            G    ++  E+       +   
Sbjct: 486 AADPDGTVRTGGYPGALRDLLGVR-VEEVHPLLPGDAVGVDLGSVREEVTL----WSEHV 540

Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890
                + +        +  P +        H    ++          + ++         
Sbjct: 541 HLAGAEAVAHYAGGPLDGLPAVTR----RRHGAGEAWYLSARLSDRGLARLLAEAAGTGP 596

Query: 891 IESIGIHLTGFADRIDLLKSGFVDIT 916
               G+ +    DR      G     
Sbjct: 597 FPEPGLEVVRRVDR-----DGAWVFV 617


>gi|108743978|gb|ABG02263.1| SalA [Streptomyces albus]
          Length = 1726

 Score = 38.7 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 66/634 (10%), Positives = 139/634 (21%), Gaps = 41/634 (6%)

Query: 55   RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELAR 114
            R+ +     +      +   LP  +  G  +         L+  L   V  +  L   A 
Sbjct: 1083 RSARAEADAWRHRIAWEPVRLPAGRFEGRWLLLHTEHGGALARALADAVPEVTPLAVGAD 1142

Query: 115  LILI-WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII-------------- 159
                     L     D  P   L LP + A A+ L + L                     
Sbjct: 1143 TDRAGLAEALARATGDGQPTGVLVLPDTVAGALRLVQALGGAQVTAPSWWLTRNAVAAGA 1202

Query: 160  -ETEEKKWE--DLHALKNEKYGMWWLLAADFLKI---------------ASKYWTERLVE 201
               E    E   +  L               + +                +    ++L  
Sbjct: 1203 PSQEGPDPEQAAIWGLGRVAALEHPERWGGLVDLPATLDAGLLRGLAAAVTSGTEDQLAL 1262

Query: 202  LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261
              A        A    EA        G +++ G TG + A            +  ++   
Sbjct: 1263 RGAEILARRLEAAPLPEAAGPAWVPPGRVLVTGGTGVLGAHVARWLA-ERGTHHLVLTGR 1321

Query: 262  LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR-LGNVSNEM 320
                 P A              S        +  L  LLD   +        L + +   
Sbjct: 1322 RGPEAPGAAELRAELAHLGAEVSIEACDVADRAQLTALLDAHPVDAVFHAAGLPDATRLD 1381

Query: 321  YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
                  +++ +       +   ++   +  +    FS +A +     +    +       
Sbjct: 1382 DADEAHLTEVWRAKAVGAVLLDELSRGRDWDAFVVFSSIAGVWGSGGQGAYAAANACAEG 1441

Query: 381  SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440
             ++  ++++  +                 G          L        L  L  A+   
Sbjct: 1442 VVE--RRRAGGLVGTSVAWGPWAGGGMVSGEGAGELERRGLRLMDPGRALVGLERALGGG 1499

Query: 441  NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
               + +A +      +   P     R    L   A                    +A   
Sbjct: 1500 EGVVVVADVE----WERFVPAFTSRRTSPLLTGFAPAAEDTGAPEASTVDAAARLLARLA 1555

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                    ++      +  A +L     + +    +++     +   + + +        
Sbjct: 1556 GKPESERRRALRELVRELAARVLHRSSDRPVDNDRSFQEVGFDSLTAVELRNLLNAETGL 1615

Query: 561  LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                 L      P    E     L        E     K + I +       +    +  
Sbjct: 1616 RLPSTLVFDHPTPRHLAELLHTELFPEPEAAHEEQLRQKLDRIPFSRWKDSGLLAAVLSL 1675

Query: 621  KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
              E        G                 +E + 
Sbjct: 1676 AEEGEPGGTGQGPTPQGAPGPRQDSAPEDDEAIH 1709


>gi|257488045|ref|ZP_05642086.1| clpB protein, putative [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331008716|gb|EGH88772.1| clpB protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 864

 Score = 38.7 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 70/576 (12%), Positives = 147/576 (25%), Gaps = 43/576 (7%)

Query: 62  SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              + +  +   +L       DV  ++F   L          S I+  +  A L+  W  
Sbjct: 40  DLLVALLERPDGMLARALLEADVAADEFAGFLRQPIE----QSAIRNPVFSAELVQ-WLQ 94

Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLAD-----IIDIIETEEKKWEDLHALKNEK 176
               I      ES +         +      AD     ++  I  E  +   L       
Sbjct: 95  DALLISNLDLGESLIDQAALILALLRNPSRYADRPYQPLLGRINIERFRDYALAQQSPGV 154

Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST 236
                  +   L   +   T++        PV  +   +R   + L +  K   I+ G  
Sbjct: 155 AKPALNQSESLLARFTHNLTQQ-AREGLLDPVLCRDDCLRQMVDILARRRKNNPIVVGEA 213

Query: 237 G---SIPATARLMSTVANHPNGA---IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
           G   +       +  V          + L  LD  +  A  +   E    +        +
Sbjct: 214 GVGKTAVVEGLALRIVHGEVPDLLKNVELLSLDMGLLQAGASIKGEFERRLKGVIEEVQS 273

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
                +   +D          + G        +  +          +          K P
Sbjct: 274 S-LRPVILFIDEAHTLIGAGVQAGGSDAANLLKPALARGELRTIAATTWAEYRQYFEKDP 332

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-----KKSALITADRNLARRVKLE 405
            + + F  V ++E     E+AI+I   L    + +        + +  A  +       +
Sbjct: 333 ALARRFQSVRVME--PTVEQAITILRGLAPLYERSHGVYLRDDAVVAAARLSARYLSGRQ 390

Query: 406 LTRFGINIDISA----GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-------L 454
           L    +++  +A     I L       +         +   F A+              L
Sbjct: 391 LPDKAVDLLDTACARVRIGLVAVPE-RLEHLRGELARQRRYFEALQRDATAGLSVDESLL 449

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                    +    + LE            ++ L+S + DR   Q        +   L  
Sbjct: 450 VTLVSDLSRMQSEADELEYRWANQLAAVKRLIGLRSQLADRKVQQAGEGSDSQYTHALEP 509

Query: 515 EDKELAVLLV----DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
           E  E+   L+    D  L              S    + +S   +     +     +   
Sbjct: 510 ELTEVRQALIDTQVDERLVSFEVCPRLIAEVVSAWTGIPVSRLAQEHSERIDRFSSELRL 569

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
           ++      +  + +           +   A    ++
Sbjct: 570 RIRGQE--QAMQAIEKSVRASAAGLNTPGAPTGVFL 603


>gi|311104686|ref|YP_003977539.1| chromosome segregation protein SMC [Achromobacter xylosoxidans A8]
 gi|310759375|gb|ADP14824.1| chromosome segregation protein SMC [Achromobacter xylosoxidans A8]
          Length = 1177

 Score = 38.7 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 58/655 (8%), Positives = 144/655 (21%), Gaps = 20/655 (3%)

Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-THPQY 294
                A   L + +A    G   L         A     T +     ++           
Sbjct: 249 QEMAQAQNELEAAIAGLRAGEAALESRRQAHYAASDAVHTAQGGLYEANAQVSRLEAEIR 308

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            +    + L  +R+ +++                        +    T+    K  + Q 
Sbjct: 309 HVVDSRNRLQARRDQLQQQIGEWTAQREHCTEQIAQAEEDLAAGAARTEEARAKAEDAQA 368

Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
               V          EA S    +R +L   ++  AL+   +  A R    L +    + 
Sbjct: 369 ALPAVE-----QRVREAASGRDEMRAALARVEQNLALVAQSQRDADRQMQALDQRRERLQ 423

Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474
                 L +     +     + +   +        +     +    +   SRA+ A +  
Sbjct: 424 QELRE-LHSPDPVRLEQLAGDRVAGEDQLEEAQEALATLEGRVPEADAERSRAQAAAQTD 482

Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
                +    +  L  L  D          +   +        +   +           L
Sbjct: 483 VQNLARLEARLSALVKLQEDVQKQGALEPWLAKHELAGLSRLWQKLHIEPGWETALEAAL 542

Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594
                +      + + +         L    L      P         +L+SL       
Sbjct: 543 RERMASMEVRNLDWARAFAEDAPPARLAFYQLPVAAPAPAAPAG--LTSLASLLRITDPD 600

Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654
              +    +  I   T +     ++  +       +         +           G+ 
Sbjct: 601 LRTLLNEWLGGIYTATDVTQALAMRASLPAGGACVVKAGHLVDAHSVRFYAPDSEQAGLL 660

Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714
            +          +    L    A   + +A   ++  +        R             
Sbjct: 661 ARQQEIENLQREIKAQQLIADQARAAVARAEVAWQQVSQAIAPARQRVAEVTRRVHDIQL 720

Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774
              RL            + R        ++ D    +   +        E       F++
Sbjct: 721 EHSRLQQQAEQSGERASRLRQDLEEIKVQEEDLRAAREEAEARFEALDEELAEHQSRFAD 780

Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI----ITELIKKRINKNTPE 830
            +       A        L  +    ++ +  +RG            +L   +  + + E
Sbjct: 781 AEIDGETLAAQAEAARAGLRELERAAQEAEFAERGIQVRITDLQRNQQLAADQSQRGSVE 840

Query: 831 INHLMKQIID-------SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878
           +  L+  + +       +  +                 +   +            
Sbjct: 841 LEQLLVDLAELDASASQAGLQDALEARAEREEALSRARQELENLAALLRGADEDR 895


>gi|291008028|ref|ZP_06566001.1| putative non-ribosomal peptide synthetase [Saccharopolyspora
            erythraea NRRL 2338]
          Length = 7177

 Score = 38.7 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 49/640 (7%), Positives = 143/640 (22%), Gaps = 31/640 (4%)

Query: 51   VPTKRAI--QELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
            +PT  A   + +R+         S +   I+   D + +      L + +  P  ++ + 
Sbjct: 675  LPTGYAAEMRRVRAALGAEDDPTSPLSRQIRFWQDELADLPGLVELPTDHPRPASASHRG 734

Query: 109  LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
             +   R+       L  + +       + +  + A  +      ADI             
Sbjct: 735  DVLRVRMDAELHRALAGLARSTGTTPFMVVHAALAALMTRLGAGADI-----PLGTPVAG 789

Query: 169  LHALKNEKYGMWWLLAA----------DFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
              +   +    +++              F ++ ++     L           ++      
Sbjct: 790  RGSSDVDDVVGYFVNTLVLRTRTQGDPTFRELLARVRETDLAAFAHQDVPFDRVVEAVNP 849

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
            A  L       +++        A        A     +I +   D  +     +      
Sbjct: 850  ARSLSHHPLFQVMLT-FETLAGARPDFPDARAEVDEVSIGVAKFDLDLRLREHHGEDGAP 908

Query: 279  TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                      +   +    +LL                +       +   +     D   
Sbjct: 909  AGADGIIEYSTDLFEREGVELLWERLAALLRSAAATPDARLTELELLAPEERIHVADAGQ 968

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
            +    I  +      +     A+ EA     ++  IA  +  S+     ++ L     + 
Sbjct: 969  VVVRGIRLDARRVRDELAVHPAVAEAFVAGGDSGLIAYVVAGSVRVADLRAYLERRVPSY 1028

Query: 399  ARRV-KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
                  + L     +   S          +           +       A ++       
Sbjct: 1029 LVPQDFVLLEEMPRDAGGSVDRERLPAPVAREAARGPRTPQEHQLAELFAEVLGVSDFGV 1088

Query: 458  GFP--------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
                          +     A +   +   ++ ++   +  L             VP W+
Sbjct: 1089 DEGFFDLGGDSIVAIRLVSRARKAGLVLTPRDVFEHKSVARLAAVATRQTAATDTVPVWE 1148

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI----SDWTKLTVTCLQNVC 565
               +     +   L++          +      +      +                 + 
Sbjct: 1149 PNGAVPLTPIMRGLLERGGDIRGYFQSMVLRAPAAMTEADLGAAVHALVAHHDVLRMRLE 1208

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                   P +      +  +             +           R++    +    E  
Sbjct: 1209 SGRLVISPEVGTGFVRRADARDIDMAEAVEQETERARAALDPAAGRVLRVCWLDAGEEPG 1268

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
              + ++  L    +++D L+          +         
Sbjct: 1269 RLVVLVHHLAVDGVSWDVLVSDLRAAWESVRAGRPVRLEP 1308


>gi|76809956|ref|YP_334774.1| hypothetical protein BURPS1710b_3404 [Burkholderia pseudomallei
           1710b]
 gi|76579409|gb|ABA48884.1| hypothetical protein BURPS1710b_3404 [Burkholderia pseudomallei
           1710b]
          Length = 917

 Score = 38.7 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 46/615 (7%), Positives = 121/615 (19%), Gaps = 30/615 (4%)

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
             + ++R           +   R      +      + +R  D    ++  I        
Sbjct: 22  ARVGVRRALPDEPPAPHAQPLFRERGRDAAERVQRVAAVRVADRHAERVGRIGAGPPG-- 79

Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
             +A    +  + +        D    +          A R +          +    + 
Sbjct: 80  --QAQQPGDHLLHLLFRRAAVADHRLLELQRRVLGDGQAARYEPADRGAARLAEEQRRLR 137

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGN 479
           +    H      +   +        +      P  + G      +      L    +   
Sbjct: 138 IDVDEHFLDRRLIGRMLADQRRDAVVDR--AEPRGQIGGGRLDHAARDVRELVAADVDHA 195

Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539
           +       + +        +   T             +E            I        
Sbjct: 196 EARDAQAGVDAEDSHGETEKLIATDTTRSDRGWIPAMRERGRAHRARRPDAIAARARPAC 255

Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599
               T    + +       T          R     W     +       +   +    K
Sbjct: 256 RVERTSRRTAAAGIAAGRHTANVARDPRRPRTWAVPWHVRLARHGERPPHRASPSRGLQK 315

Query: 600 ANAIEWIDIITRLIDGETV----KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
                   +       E+V      + +    + + G     + +    +          
Sbjct: 316 NGGQRPPALAETDASYESVTEVAHARHDHRDVVLVGGGDHLVVAHRAARLDHAGRARRDD 375

Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR---------------HLIYT 700
              A      RV +     +   + +   A D    +                    +  
Sbjct: 376 DVEAVAEREERVRRDGRAREREARVLCLDARDARRIDAAHLACADAERHPVAAEHDRVRL 435

Query: 701 RSLRENNIPTIASRWLQRLLVL---GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
              R+         +L+R +             L+            L         +R 
Sbjct: 436 HVFRDAPCEQEVVHFLRRRVAFRDDAQLARLHVLRIERLHEQAAAHALQIERVMAFAQRD 495

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI-I 816
                +            ++  +  +    R  L    +    +  +  +RG       +
Sbjct: 496 FEQAHVLLGHEHLLGRVRERRRDQHFDELLRDRLGRGLVDFAVERDNAAERGGRIGLERL 555

Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876
                +           ++        E+ +  P    I   +  +     L    +   
Sbjct: 556 RVRFARVRAHRDAARIRVLDDHARRRVERLHAFPRGVRIGDVVVRQFLALQLAVVRERAG 615

Query: 877 SIEKIFVNIPAKMAI 891
               + V   A + I
Sbjct: 616 RRRDVAVERGALVRI 630


>gi|84624059|ref|YP_451431.1| hypothetical protein XOO_2402 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84367999|dbj|BAE69157.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 1288

 Score = 38.7 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 57/670 (8%), Positives = 163/670 (24%), Gaps = 46/670 (6%)

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
                +R          K      GS  +  A   L  T A               + + 
Sbjct: 188 RLENALRDARARGDALAKAVFFGRGSAQATEAEQALARTNAQIDQLQSAYAQARDALQSD 247

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             ++ T    + T ++   +   Q  +  L   L    + +      +      +  + +
Sbjct: 248 QASSSTSAPASRTLASHLAAEQSQ-EIQALRTQLARDEQMLSLQSVHAERCQRNARRLQE 306

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
             +  + +  +           + +    V+++EA +   +      A+  +  ++    
Sbjct: 307 RLVQVEATLKQAQHSSRVNTKELWQQDHTVSVLEAADGDMQ-----RAVETAAAQSPADE 361

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A    D ++A  +   L             P+S  +  +    L                
Sbjct: 362 ARRAPDDSVAEAMAALLD-ALPGFREDTIGPMSRQVLRTWADGLHR-------------- 406

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
                 +         +  +AL +     +  S       + VL R+   +    +P  Q
Sbjct: 407 ------RSAAFGTDALQPVDALNIALQALSIASQSDATTAANVLQRLGEVQLRELIPPPQ 460

Query: 510 SRLSEEDKELAVLLVDHILQCIT-----PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
              + E       +   +   ++      ++ +   +  T       +  ++ +     +
Sbjct: 461 VSNAAEAVPPMEAVTTCVGLLVSVPRGMQVLLHMLREEPTSPAREWLEAAQVHLRASHRL 520

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
            L    +     +  + +  +            +++           + +G         
Sbjct: 521 ALTPDAEQAERAWLADAQMGARHAVHGATPLQGLQSATDAQRSAFHAIRNGYETTRAGSP 580

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
            + +     + ++         G      +          +         +  + +   A
Sbjct: 581 YARVNASLQMFAQWAVAGGQTRGKRALNPFNALKLGMKVGASEALPTAGRRANDAFREAA 640

Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
            H        RH+  T     +                           +   +     +
Sbjct: 641 GHLSNWLVARRHIQMTCGQLPSQDELAMQAL--------------AECVQWLPHEQSATE 686

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
           L +T K       +     ++   + S ++ +Q      A+ +  +          +   
Sbjct: 687 LIFTAKVLAEIEQRARELQDSVTASLSTTDARQPAACHPAIASAWVALRTSRMRLPETLR 746

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
              RG L H I              E+  + +          +   H     R    +  
Sbjct: 747 LIQRGLLDHAIQPNDTPAGAAPLDKELASVARNHFHQAVGNASRFLHEGDTSRVRSPRAL 806

Query: 865 HSFLEHEEKI 874
            + L +  + 
Sbjct: 807 FACLRNVMER 816


>gi|156741850|ref|YP_001431979.1| glycosyltransferase 36 [Roseiflexus castenholzii DSM 13941]
 gi|156233178|gb|ABU57961.1| glycosyltransferase 36 [Roseiflexus castenholzii DSM 13941]
          Length = 2864

 Score = 38.7 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 67/679 (9%), Positives = 148/679 (21%), Gaps = 62/679 (9%)

Query: 59   ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118
             LRS F  I+     + P   ++ DV  + F   +     +  PV               
Sbjct: 702  ALRSRFARISSGNVGVDPYTTAVSDVYMDLFGEGIFAGKGIYDPV--------------A 747

Query: 119  WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178
             R  L D   D    S   +    A A  L+    +++D   T    +    A ++    
Sbjct: 748  MRETLHDRFPDNTLLSHDLIEGCYARAALLSDI--ELLDSYPT---TYAAYSARQHRWVR 802

Query: 179  MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238
              W +A   L    +             P   +  +       L       ++IAG    
Sbjct: 803  GDWQIAGWLLPRVPRASGGYAPN---VLPPISRFKIADNLRRSLTPPATLAVLIAGWFAL 859

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS-------------- 284
                A        H    +    L+  +    W  +         +              
Sbjct: 860  PGRPAVWTLLALGHYLAPLTFAILNTRLAPTDWRYLHVSLIAAAENLRWPVLQLLLNVAM 919

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                +     ++A+ L  + +    +      +      +            S +    +
Sbjct: 920  LPDQAWLNLDAVARTLWRMGVTHRRLLEWETAAQAQRRLTDSFDYLIKRMGPSAVVFVAL 979

Query: 345  LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404
               +   ++  +              A   A      LD+      +        RR+  
Sbjct: 980  AAVRFERLRDAW------VPALPVTLAWGAAPFFARWLDQAYVPRRI-EPLSANDRRMLR 1032

Query: 405  ELTRFGINIDISAGIPLSTTLHSSILTSLLN-AIFKLNDFMAIATLVKHPLAKFGFPEKY 463
             + R          +P    L            + +      I   +   LA   F    
Sbjct: 1033 RVARATWAYFERFVVPEQHFLAPDNFQETPRPVVAERTSPTNIGLQLLSDLAAVDFGYLG 1092

Query: 464  LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
            +      +  V     +       L +           +T   H  S L     +     
Sbjct: 1093 VRSLAERVGRVFETIQQMERFRGHLYNWY---------DTRTLHPLSPLYVSTVDSGNFA 1143

Query: 524  VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
               I      L   +           + D  ++    L          +  L   +    
Sbjct: 1144 GHLITLRQGLLALAERPPYGPWIIEGLRDTLEIIQERLPADARGRTSLVALLQALDATPD 1203

Query: 584  LSSLFSKIIETGSCIKANAI---EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
                    +   + +           +    L                            
Sbjct: 1204 TLEGHRARLLQAADLAIILARESRVAEWAEALARQAYSLLDDMPHDGKPAAPEDPQF--- 1260

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700
                ++  L+          +       +  L         G+  + +     +   + +
Sbjct: 1261 --RTVVERLSGMCIDLIAEMDFRFLYDERRRLFAIGYNVSEGRRDNSYYDLLASEARLAS 1318

Query: 701  R-SLRENNIPTIASRWLQR 718
              ++    +P     ++ R
Sbjct: 1319 FLAIALGEVPQEHWFYIGR 1337


>gi|90420831|ref|ZP_01228736.1| glutamate-ammonia-ligase adenylyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334806|gb|EAS48578.1| glutamate-ammonia-ligase adenylyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 1007

 Score = 38.7 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 84/771 (10%), Positives = 195/771 (25%), Gaps = 66/771 (8%)

Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161
                + +   +R++      + +   D Y             A+ LA +    +   E 
Sbjct: 220 AADPSESVDTFSRIVRRLVRIVGERTADGYVFRTDLRLRPDPGAMPLAISTDAAMSYYEG 279

Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKY-WTERL----------------VELNA 204
             + WE    +K             FL+  + + W + L                     
Sbjct: 280 SGRNWERAAMIKACTIAGDRAAGEAFLQELTPFVWRKYLDFAAIADIQAMKTRIDRHRGF 339

Query: 205 SSPV--GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
                 G+ + L R     +    +   +IAG       + R  + +     G+ +    
Sbjct: 340 DDIAVGGHNVKLGRGGIREVEFFVQAQQLIAGGRAPQLRSRRTDAALHELAEGSWITADT 399

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHP--QYSLAKLLDFLDIKREDVKRLGNVSNEM 320
              +    W     +      ++    T P  +  L ++         +      +S+  
Sbjct: 400 ARDLLEDYWFLRRIEHCIQMVADEQSHTLPEDEEGLERIARLAGFAGREAFAEALLSHLR 459

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKI---PNIQKCFSDVALIEADNEREEAISIAIA 377
                  S      +       + +  ++    +     + +  +      +    +A  
Sbjct: 460 RVDRHYTSLFNDGRERDAGEGEEAVSKRLLSSEDDPDALARLKELGFARPED----VARI 515

Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI--LTSLLN 435
           +R       + +   TA   LA  + + L+ F    D    I    T  + +       +
Sbjct: 516 VRGWGFGRYRSTRSETARERLASGLPMLLSAFSNAKDPDGAIAAFDTFLAGLPAGIQFFS 575

Query: 436 AIFKLNDFMAIATLV--KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
            I      + +  L+    P  +     +                 +++     L S + 
Sbjct: 576 LIASNPRILDLLALIITSAPALRETIAARPHVFDALLDPAFFDEVPESAMMEKRLASFLS 635

Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553
           +    +     +  + S          +  V  + +             +   N     +
Sbjct: 636 EANGYEDILARLRIFASEQRFLVGARLLSGVVDVGEAGPAFSNIANVVLNATLNAVGDAF 695

Query: 554 TKLTVTC----LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK--ANAIEWID 607
            +         +  + +            +    L       +E     K  A  + +  
Sbjct: 696 AEKHGRVPGARMALLGMGRLGNCELTAGSDVDLILLYDHDPDVEESDGDKPLATGLYFAR 755

Query: 608 IITRLIDGETVKPKIEKSSTLFI-------LGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
           +  RLI   TV+ +      +         +G L +R+ +F                T  
Sbjct: 756 LTQRLIAALTVQMREGILYEVDFRLRPSGNMGPLATRIDSFRRYQATDAWTWERMALTRS 815

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP----------- 709
            P        D    T  + +G+A      A  +R +   R+  + + P           
Sbjct: 816 RPIAGDPQFRDEVGHTICEILGEARD---EATTSRDVADMRARLDRDKPPKGPLDLKLIP 872

Query: 710 --TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW--TRKLDYTTKQPHYKRPKPFPPLEA 765
              I   +L +  +L G    D +       L       +D                   
Sbjct: 873 GGLIDLEFLAQWALLTGRADSDLVGSPTVSVLAASDLAAVDADGAPVDLPGAMRTYTSVI 932

Query: 766 QPRTYSFSEIKQLINDP--YAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
           Q      + ++++ + P   A    R L L+                + H 
Sbjct: 933 QILRLGPTGVERIEDLPPGLADRLTRALGLEEPGEV-APLLAKTAARVRHA 982


>gi|307545776|ref|YP_003898255.1| SMC domain protein [Halomonas elongata DSM 2581]
 gi|307217800|emb|CBV43070.1| SMC domain protein [Halomonas elongata DSM 2581]
          Length = 1104

 Score = 38.7 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 41/519 (7%), Positives = 108/519 (20%), Gaps = 5/519 (0%)

Query: 173 KNEKYGMWWLLAADFLKIASKYW-TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231
           +  +    W      L    ++    R            +   +        + +     
Sbjct: 419 ERRRQRDAWQATLAQLMGDHQHLEDARQAAQQLLDRAARRRLALDELTSRWQQVSHAAEA 478

Query: 232 IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291
               T       R ++++      A            ++   I       + S       
Sbjct: 479 HRRLTEQRHDDERRLASLLEQGQSARRQLDEKHSHYISVAAVIERSRAVRSESVAMLREG 538

Query: 292 PQYSLA-KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
            Q +    +   LD            + ++  +     +          R     ++ + 
Sbjct: 539 LQENEPCPVCGGLDHPWRHQPPPTPEAAQLAAQQQEEDRQLSEAQEERDRAQQQRDHLVG 598

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410
             +   + +   + D    E         +       + A I   R  A   +       
Sbjct: 599 EYRALEAALKQRQQDARAAEQQLDEARQALHEHPLHAELAAIDETRRDAWLAEQRADSET 658

Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI---ATLVKHPLAKFGFPEKYLSRA 467
                   +   T   + +                +      +   LA+       L   
Sbjct: 659 RRAHHQQVLDDLTRAETELAPLDKALQQDELVLARLGTQQEALDKELAELAERLPPLQAQ 718

Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527
           ++ L                 +  + +R A           Q   + ++ +      DH 
Sbjct: 719 RDDLARRLQARLGEHASPDAWQQHLDNRQAQAHQARDTALSQLHDARQEVQRLTQQRDHE 778

Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
            Q +  L+  + + +        +       T  + +   +          +  +     
Sbjct: 779 RQRLDALLRERDSLDGELAEWRRAHPELDDATLARLLDQSDDEVKRQEQQLDAAERTLQQ 838

Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
               +               + T     E   P +  S    I     +     + L   
Sbjct: 839 ADAALAERRQALLAHRRDQALGTDDATDEDDTPLLGDSIETRIRERRAALASEREALAPA 898

Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686
                     T          ++      AE    +A +
Sbjct: 899 LEAAQQHRDETQHALRDDDRKRARQQQGQAELETARAEY 937


>gi|307083132|ref|ZP_07492245.1| hypothetical protein TMLG_03383 [Mycobacterium tuberculosis
           SUMu012]
 gi|308367139|gb|EFP55990.1| hypothetical protein TMLG_03383 [Mycobacterium tuberculosis
           SUMu012]
          Length = 314

 Score = 38.7 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 72/286 (25%), Gaps = 17/286 (5%)

Query: 39  LNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS-LGDVVEEKFTADLLLSY 97
             P   A   + V  +   + L      + G        + + +     +   A++  + 
Sbjct: 25  PQPDPFAQELVLVAARGVERWLSQRLSLVLGCGPGRADGVCAGIAFRNPQSLIAEITGTL 84

Query: 98  NLNPPVSNIQRLLEL----ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153
           + +P          L    A L   W   L   +         +          +A+ LA
Sbjct: 85  DDDPWSPEALAWPLLAVIDASLDEPWCRTLASHLGHFATTDAEAELRRGRR-YSVARRLA 143

Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213
            +      +         L               L      W   +  + A  P      
Sbjct: 144 GLFASYARQR------PGLLAAWLDGDLGELPGDLAWQPPLWRALVTTVGADPPHVRHDK 197

Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
            +    +         + + G T       +L+  +A H +  + LP         +W  
Sbjct: 198 TIARLRDGPADLPA-RLSLFGHTRLACTDVQLLDALAVHHDLHLWLPHP----SDELWRA 252

Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319
           +               T  + +   LL+ L     +++R    +  
Sbjct: 253 LAGFQGADGLLPRRQDTSRRAAQHPLLETLGRDVRELQRALPAARA 298


>gi|291300865|ref|YP_003512143.1| NB-ARC domain-containing protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290570085|gb|ADD43050.1| NB-ARC domain protein [Stackebrandtia nassauensis DSM 44728]
          Length = 834

 Score = 38.7 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 37/390 (9%), Positives = 93/390 (23%), Gaps = 13/390 (3%)

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
           +    P ++     ++ AT   + T+        VL   +     +    I   +     
Sbjct: 81  RTRVDPEVVVAIAAALGATDEDIQTIRQLCQA--VLDRFNRTRIVSTKGDIPAPTDTFVG 138

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                    Q +         I  E +  +G     +     +   +        +    
Sbjct: 139 RGVERRRIAQLANESRDQATVIVIEGMAGIGKSELALRAAQDLAEAARGARVRLYVNLRG 198

Query: 344 ILENKIPNIQKC--FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
              ++ P          ++ +   N + EA++ A       +    + A++  D      
Sbjct: 199 YDPHEPPADPDAVVRGFLSHLGMPNFKIEALNAATRAARYRELLNARDAVVVLDNAFDAE 258

Query: 402 VKLEL--TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459
               L     G    ++    L      + L S       L       TL+ +       
Sbjct: 259 QVRHLLAPSAGTVFLVTTRRRL------TDLDSAHRMQLDLLPVNDALTLL-NRYDPADR 311

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
            +     A   +EL      +       L       ++                      
Sbjct: 312 VDSAPQSAAQLVELCRRLPLELVAVGRQLSGKPEWELSDHVERLKRIPPSEVSRPALAVS 371

Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
              L     +    L  +   + +    ++++D  +           DEH          
Sbjct: 372 YASLRPDEQRVFRQLSIHPGREFTMDTVVALTDLGREATESALRRLSDEHLLSQKEPGRY 431

Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDII 609
           +       +++ +       +     I+ +
Sbjct: 432 DFHDSIREYARWLADSDEPVSRQRAAIERL 461


>gi|296280718|gb|ADH04660.1| TugD [Chondromyces crocatus]
          Length = 6610

 Score = 38.7 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 61/498 (12%), Positives = 127/498 (25%), Gaps = 38/498 (7%)

Query: 124  PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183
              + + L       L ++ ++A      LAD++            + +L           
Sbjct: 2573 LALHQALTRRGATVLHLALSDAHLDRAALADLLRDALDGTVAPRAVLSLLALD-----EA 2627

Query: 184  AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243
                     + +   L  + A         L       +  G   P+    S        
Sbjct: 2628 TLSDQHPLPRGFALTLALVQALGDAAIHAPLWLLTHGAVSTGRADPL----SQPLQALIW 2683

Query: 244  RLMSTVA-NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
             L   VA  HP     L  L   + TA  + ++   T              ++   L   
Sbjct: 2684 GLGRVVALEHPERWGGLLDLPEVLDTAALDPLSAALTQHHDDQLALRPSGLFARRLLRAP 2743

Query: 303  LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
            L              +    R      + L    +      +            +    +
Sbjct: 2744 LG-------------DAAPARRFTPRDTILVTGGTGALGAHVAR------WLTRAGAQHL 2784

Query: 363  EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG------INIDIS 416
               + R      A  LR  L +   + +L+  D      +   L R          +  +
Sbjct: 2785 VLTSRRGHLAPGADLLRDELTQLGARVSLVACDVTDRASLTALLQRIDAEGPPLRAVFHT 2844

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
            AGIP      S  LT+L       +  +  A L+   LA        L  +   +   + 
Sbjct: 2845 AGIP---QHASLDLTTLDELASVTSAKLEGARLLDDLLADRHLDAFVLFSSIAGIWGSSH 2901

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
            +G   + +          R   +          +     D+     L    +  + P +T
Sbjct: 2902 QGAYAAANAFLDALAEHRRTHGRAATAIAWGAWADGGMVDQAGEEQLRRRGIATMAPTLT 2961

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                +++   + +      +              +       E  + L +L     E+  
Sbjct: 2962 LAALQHALDHDETAITLADVDWARFAPAFASTRARPLLDDLPEAQRALEALAPTPPESDV 3021

Query: 597  CIKANAIEWIDIITRLID 614
              +   +E  + +  L+ 
Sbjct: 3022 LTRLRPLEAHERLEHLVS 3039


>gi|162456540|ref|YP_001618907.1| non-ribosomal peptide synthetase [Sorangium cellulosum 'So ce 56']
 gi|161167122|emb|CAN98427.1| non-ribosomal peptide synthetase [Sorangium cellulosum 'So ce 56']
          Length = 4722

 Score = 38.7 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 76/833 (9%), Positives = 193/833 (23%), Gaps = 65/833 (7%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK------- 165
            ARL L     L  ++ DL PE P  L +   + +  A +   +I+ ++T  ++       
Sbjct: 1174 ARLHLADGPVLRAVLFDLGPERPGRLLLVAHHLVIDAVSWRILIEDLQTACQQHARGEAI 1233

Query: 166  --WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
               E++ +     + ++    ++ +   ++ W        A        A + A+   L 
Sbjct: 1234 RLPEEVVSFGEWAWRLFTQAQSEEVTRQAQAWLAASRPARALPADDPAGASLEADTVSLT 1293

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC----HIPTAIWNTITEKST 279
            +        A    +     R+   +     GA+     D      +     + + +   
Sbjct: 1294 RFLDAEDTRALLQAAPAYRLRVDEVLLAAFAGALAQWTGDPAVLLDLEGHGRDALDDLDL 1353

Query: 280  NITSSNT----------TYSTHPQYSLAKLLDFLDIKREDVKR--------LGNVSNEMY 321
            + T                   P+ +L  L + L    +                +  + 
Sbjct: 1354 SRTVGWFTSIFPVRLEIPAGAAPERALEALKEQLRAAPQGGATYGMLRYLSEDAQAAPLR 1413

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
             R+    +        D+  +  L            D           +A  +   LR+ 
Sbjct: 1414 ERAAAQVRFNYLGRWDDLFASSPLFAHAEGDVGRNQDPRAPRGYELEVDAAIVGGCLRVM 1473

Query: 382  LDENKKKS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
               +  +     +             L         +     S    + +  + L+ +  
Sbjct: 1474 WGHSGARYRPETVARLFEDFAARLRAL-VARGAAPEAGAYSPSDFPLARLDQARLDRLLG 1532

Query: 440  LNDFMA---IATLVKHPLAKFGF--------PEKYLSRAKNALELVALRGNKNSYDIMD- 487
                +      + ++  L              E+   R + AL++ A R    +  +   
Sbjct: 1533 PGHDVEDVYPLSPLQQGLLFHSLWEPGSGVYVEQVTCRLEGALDVDAFREAWQAVALHHG 1592

Query: 488  -LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI------TPLVTYKTN 540
             L++      A +            +  ED   A  +     +                 
Sbjct: 1593 VLRTTFAWEGADEPLQVVRRGAAVAVEIEDWRGARNVGAEAQRARLEARIEADRARGFDL 1652

Query: 541  KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                   +++          L +               ++                  + 
Sbjct: 1653 ARGPLMRVALLRVADEAYQFLWSHHHLLLDGWAASLVLQDAFAAYEALRAGRPAALSPRP 1712

Query: 601  NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
               E+I  +                +       L   L           +          
Sbjct: 1713 RYREYIGWLRERDASADEGFWRGALAGFSAATPLP--LERVPEAEEASGHGATIVSLPEP 1770

Query: 661  NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
                 +       +  +       A     A  T  +++  ++   + P      +  + 
Sbjct: 1771 VTARLQRFAQQHRVTLSTLVQAAWALLLSRAARTDDVVFGVTVAGRSAPLAGIDAMVGIF 1830

Query: 721  VLGGTDFFDNLKKRG-----QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
            +          +        +  L  T  L      P  +          QP   S    
Sbjct: 1831 INTLPLRVAVPQAATVADWLRDLLRTTTDLGPHEHTPLAQARGFSAVPAGQPLFESLVVF 1890

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            +    DP        L +  +    +         L    +   +     +   E+   +
Sbjct: 1891 ENYPTDPRTQQGLPGLAVRDVAFADQTNYPLTLAALPGARLQLRLSYDRRRFDEEVASRL 1950

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLF-----HKISHSFLEHEEKIQSSIEKIFV 883
              +++    +    P   +    L       ++   +   E           +
Sbjct: 1951 LGLVEVALRQIVSRPEARVGELSLVGELESRRVVTEWNATERAYPGERHVHEL 2003


>gi|297561233|ref|YP_003680207.1| SNF2-related protein [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296845681|gb|ADH67701.1| SNF2-related protein [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 1033

 Score = 38.7 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 44/447 (9%), Positives = 100/447 (22%), Gaps = 18/447 (4%)

Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
            +   L   L                            L  D +          +     
Sbjct: 65  AAHGTLDLSLPGDTSAPFPSTRAPGTAPAAFHPWRVPALRLDAASAEALLAAPARDIPGT 124

Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
                +A + A  +  E +  +  +   L  +  ++             +  L      +
Sbjct: 125 ASGPSLAHLRAVRDFAELLVTSGCVLPDLVGDPARA---RWRPAPLDWAEEHLAALTGAL 181

Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473
             SA   L      +I  + + A  +L    A   LV+   A     +       + ++ 
Sbjct: 182 PPSARAHLPGEPPDAIARACVLAPLELLTDAAARRLVRPRRAHRARTDPADQGRTDPVDQ 241

Query: 474 VALRG---NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
                    + S +          +              +  +   +         +   
Sbjct: 242 SRTDPAGQGRTSPEQTSDDGAAPGQRLAAALTGAPDGIGADTAARLRGPLREWRSRVRGA 301

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
               + +   +    G  ++  W +        + L++  +     +       ++L   
Sbjct: 302 GRAALLFLLREPDRAGPWALEFWVRSVSDPGLRLPLEQVWQGEGAAWLPADVDATALADL 361

Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL-ESRLLNFDTLILGGL 649
                               RL+       +        + G      L  +      GL
Sbjct: 362 RRAARHHPPLRRALRDLAPARLLMSTEDAERFVAEGAARLSGAGFGVVLPEWRGRPALGL 421

Query: 650 NEGVWPKNTAK-----------NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698
              V      +           N     ++Q     ++      + A   E+A   R L+
Sbjct: 422 RVAVEEAPRRRGGGGVGPSELVNVSFEALLQGRDGEESVPLGEDELAELAELARLKRSLV 481

Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGT 725
             R       P   S  L  +   GG 
Sbjct: 482 RVRGRWLEVDPERLSATLDLVKRRGGH 508


>gi|153006215|ref|YP_001380540.1| hypothetical protein Anae109_3372 [Anaeromyxobacter sp. Fw109-5]
 gi|152029788|gb|ABS27556.1| Tetratricopeptide TPR_2 repeat protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 4095

 Score = 38.7 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 52/663 (7%), Positives = 131/663 (19%), Gaps = 21/663 (3%)

Query: 54  KRAIQELRSEFIE-ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112
           +R    L+    +          P      D        D      L             
Sbjct: 270 RREAATLQLRLAQLHLAYDPEGTPRALERIDRAWAFLPGDPAALDLLARIHGEKGDHRGY 329

Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
           +  +     +  D    +     ++       +   +   A    +      +   L A 
Sbjct: 330 SDALARLAAQTRDRAALVALHLEMARVDVVRFSDADSALAALGKALALDPACEPAALQAF 389

Query: 173 KNEKYGMWWLLAADFLKI------------ASKYWTERLVELNASSPVGYQIALMRAEAE 220
           ++      +  A   L+               +    +L       P   +  L  A   
Sbjct: 390 EHHADAGRFEEALATLERHLAAAQPKAAHAPLRVRAAQLARERLGDPARARRHLEAALRA 449

Query: 221 HLMKGTKGPIIIAGSTGSIP--ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                     +      +    A A+++   A           +   +       +    
Sbjct: 450 DPGHAPAAAALAPLLEEAEEWSALAQVLEASAGLERDRAERIRILERLAEVQQEQLGRPK 509

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
             + + +   +  P    A     ++          ++       +  +        T  
Sbjct: 510 EALRTLSRALALEPSR--AATRKAMEGAAARADAFLDLVRAYRAAATAVQDDLRAKKTLL 567

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI--ALRMSLDENKKKSALITADR 396
            R  +IL+  +    +       +   +  +   + A+   +  +  + +  S L     
Sbjct: 568 RRVAEILDRDLGKPDEAVGAWRALAELDPEDRGATAALEACMARAGQQVELASELEQRRD 627

Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456
                 +  L+     + + AG P           ++      L         +  P A+
Sbjct: 628 AAEGDERRALSARLGRLWVDAGQPERAAAAWRDTLAVEEDDEGLWGLNGALEAI--PGAR 685

Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                  +          A R          L   +       +    V         + 
Sbjct: 686 AAEERAGVLARLATRRGGAERAAVEIARAELLADPLARHGEAAELALSVLQAGGVGPAQQ 745

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            +   LL   + + + PL   +    +       +          + +  D         
Sbjct: 746 GDAIALLERLLARAVEPLRISQALARAYAALGDAARHAGSLERLARELPADADPHERARH 805

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             +     +          S   A               E +   +     LF +    +
Sbjct: 806 LLDASTLRADRLGDARGALSAALAAVRACPQHAEARRRAEILAAGVGAERELFEVLVEAA 865

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
             L         L                   +              A            
Sbjct: 866 GKLAARPEDELPLRLRAASIAEEDLGAFEDAARELRRALELAPDDAAALAALTRVTLAAE 925

Query: 697 LIY 699
              
Sbjct: 926 RWV 928



 Score = 38.0 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 67/704 (9%), Positives = 149/704 (21%), Gaps = 11/704 (1%)

Query: 64  FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123
                   +     +++      ++  A                  L LA+L L +  + 
Sbjct: 232 LDRAAPGAAATRDRLRAFPRAWRDEVRALEARVPQARDRREAATLQLRLAQLHLAYDPEG 291

Query: 124 PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183
                +    +   LP  PA          D++  I  E+                    
Sbjct: 292 TPRALERIDRAWAFLPGDPAAL--------DLLARIHGEKGDHRGYSDALARLAAQTRDR 343

Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243
           AA           + +   +A S +      +  +        +     A +     A A
Sbjct: 344 AALVALHLEMARVDVVRFSDADSALAALGKALALDPACEPAALQAFEHHADAGRFEEALA 403

Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303
            L   +A     A   P        A                   +       A  L  L
Sbjct: 404 TLERHLAAAQPKAAHAPLRVRAAQLARERLGDPARARRHLEAALRADPGHAPAAAALAPL 463

Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363
             + E+   L  V     G     ++     +       + L      ++     +AL  
Sbjct: 464 LEEAEEWSALAQVLEASAGLERDRAERIRILERLAEVQQEQLGRPKEALRTLSRALALEP 523

Query: 364 ADNEREEAISIAIALRMS-LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
           +     +A+  A A   + LD  +   A  TA ++  R  K  L R    +D   G P  
Sbjct: 524 SRAATRKAMEGAAARADAFLDLVRAYRAAATAVQDDLRAKKTLLRRVAEILDRDLGKPDE 583

Query: 423 TTLHSSIL--TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
                  L      +          +A   +         ++  +   +    ++ R  +
Sbjct: 584 AVGAWRALAELDPEDRGATAALEACMARAGQQVELASELEQRRDAAEGDERRALSARLGR 643

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
              D    +        T                 +        +     +  L T +  
Sbjct: 644 LWVDAGQPERAAAAWRDTLAVEEDDEGLWGLNGALEAIPGARAAEERAGVLARLATRRGG 703

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                  ++ ++     +             L         +  +    + +   +    
Sbjct: 704 AERAAVEIARAELLADPLARHGEAAELALSVLQAGGVGPAQQGDAIALLERLLARAVEPL 763

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
              + +      +          +     +    +        L    L           
Sbjct: 764 RISQALARAYAALGDAARHAGSLERLARELPADADPHERARHLLDASTLRADRLGDARGA 823

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
                  +++      A +     A           ++   + +    P        R  
Sbjct: 824 LSAALAAVRACPQHAEARRRAEILAAGVGAERELFEVLVEAAGKLAARPEDELPLRLRAA 883

Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
            +   D         +         D         R        
Sbjct: 884 SIAEEDLGAFEDAARELRRALELAPDDAAALAALTRVTLAAERW 927


>gi|134100821|ref|YP_001106482.1| putative non-ribosomal peptide synthetase [Saccharopolyspora
            erythraea NRRL 2338]
 gi|133913444|emb|CAM03557.1| putative non-ribosomal peptide synthetase [Saccharopolyspora
            erythraea NRRL 2338]
          Length = 7259

 Score = 38.7 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 49/640 (7%), Positives = 143/640 (22%), Gaps = 31/640 (4%)

Query: 51   VPTKRAI--QELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108
            +PT  A   + +R+         S +   I+   D + +      L + +  P  ++ + 
Sbjct: 757  LPTGYAAEMRRVRAALGAEDDPTSPLSRQIRFWQDELADLPGLVELPTDHPRPASASHRG 816

Query: 109  LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
             +   R+       L  + +       + +  + A  +      ADI             
Sbjct: 817  DVLRVRMDAELHRALAGLARSTGTTPFMVVHAALAALMTRLGAGADI-----PLGTPVAG 871

Query: 169  LHALKNEKYGMWWLLAA----------DFLKIASKYWTERLVELNASSPVGYQIALMRAE 218
              +   +    +++              F ++ ++     L           ++      
Sbjct: 872  RGSSDVDDVVGYFVNTLVLRTRTQGDPTFRELLARVRETDLAAFAHQDVPFDRVVEAVNP 931

Query: 219  AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
            A  L       +++        A        A     +I +   D  +     +      
Sbjct: 932  ARSLSHHPLFQVMLT-FETLAGARPDFPDARAEVDEVSIGVAKFDLDLRLREHHGEDGAP 990

Query: 279  TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                      +   +    +LL                +       +   +     D   
Sbjct: 991  AGADGIIEYSTDLFEREGVELLWERLAALLRSAAATPDARLTELELLAPEERIHVADAGQ 1050

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
            +    I  +      +     A+ EA     ++  IA  +  S+     ++ L     + 
Sbjct: 1051 VVVRGIRLDARRVRDELAVHPAVAEAFVAGGDSGLIAYVVAGSVRVADLRAYLERRVPSY 1110

Query: 399  ARRV-KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
                  + L     +   S          +           +       A ++       
Sbjct: 1111 LVPQDFVLLEEMPRDAGGSVDRERLPAPVAREAARGPRTPQEHQLAELFAEVLGVSDFGV 1170

Query: 458  GFP--------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
                          +     A +   +   ++ ++   +  L             VP W+
Sbjct: 1171 DEGFFDLGGDSIVAIRLVSRARKAGLVLTPRDVFEHKSVARLAAVATRQTAATDTVPVWE 1230

Query: 510  SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI----SDWTKLTVTCLQNVC 565
               +     +   L++          +      +      +                 + 
Sbjct: 1231 PNGAVPLTPIMRGLLERGGDIRGYFQSMVLRAPAAMTEADLGAAVHALVAHHDVLRMRLE 1290

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
                   P +      +  +             +           R++    +    E  
Sbjct: 1291 SGRLVISPEVGTGFVRRADARDIDMAEAVEQETERARAALDPAAGRVLRVCWLDAGEEPG 1350

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665
              + ++  L    +++D L+          +         
Sbjct: 1351 RLVVLVHHLAVDGVSWDVLVSDLRAAWESVRAGRPVRLEP 1390


>gi|126453674|ref|YP_001066829.1| non-ribosomal peptide synthase [Burkholderia pseudomallei 1106a]
 gi|242315926|ref|ZP_04814942.1| non-ribosomal peptide synthase [Burkholderia pseudomallei 1106b]
 gi|126227316|gb|ABN90856.1| non-ribosomal peptide synthase [Burkholderia pseudomallei 1106a]
 gi|242139165|gb|EES25567.1| non-ribosomal peptide synthase [Burkholderia pseudomallei 1106b]
          Length = 2979

 Score = 38.7 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 47/626 (7%), Positives = 128/626 (20%), Gaps = 50/626 (7%)

Query: 272  NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
              +  +     +   +    P   +      +D    D      + +   G      +++
Sbjct: 1163 AHVRWQQAPDEARRASAGDMPLLPIHHWFFEVDSTHVDHYHQSRLLDVPAGVDAAFVRAW 1222

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSAL 391
            L    +      +     P   +        EA +    A  +   +  +   +      
Sbjct: 1223 LAALVARHDALRLRLRDTPAGWRA----HFAEAPHADASARLMVCDVAWAGAPD------ 1272

Query: 392  ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451
              A        +  +      + ++A +    T    +L    +A+     +  I   ++
Sbjct: 1273 -AALDAFFADARRGVRLADGPLFVAALVAAGATGRGRLLLIGHHAVVDGVSWRVIVADLR 1331

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
               A++           +       R    + D   L +     +   +           
Sbjct: 1332 RTFAQWPALRPDAPGPASDAYQAWARALVAAADSPALHAERAHWLRVLRAPAPALRLDRA 1391

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
               +    A  +    L              +            L +   +    D  R 
Sbjct: 1392 AGGDATRRATRIGAVSLNAADTRALLADTHRAYRTQTIELLLAGLLLAFRRWQGHDALRI 1451

Query: 572  LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631
                   E          + +            +      L    +       S    I+
Sbjct: 1452 ALEGHGREADALAHYGAERGLPDVGETVGWFTSYYPQWLTLAGAASAPAPAADSVAAAIM 1511

Query: 632  GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691
                         I  G+   V           +   +   N           A    + 
Sbjct: 1512 AVKTQYRATPRHGIGYGILRYVAGDPELAAEAAAHAPEIVFNYLGQFDVANDEAAGIAVL 1571

Query: 692  NGTRHLIYTRSLREN-----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746
            + +       +         +           +   G     +++   G  ++   R++ 
Sbjct: 1572 DLSSRDDIAAARPREHALGIDGGVKDGCLAFEIDYSGAAFDDESIAAFGAHFMHALREIA 1631

Query: 747  YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
               K     RP P     A                                         
Sbjct: 1632 AHCKACAAWRPTPEDFPLAAVTQAELDAWHA----------------------------- 1662

Query: 807  DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866
                  H  +  L      +     + L+ +   ++  + +                  +
Sbjct: 1663 -----RHPSLETLYPATAIQRGMVFHSLLPKQASAYTNQVHARVGGGTFDAARLRHAWQT 1717

Query: 867  FLEHEEKIQSSIEKIFVNIPAKMAIE 892
             LE    ++++        P ++ + 
Sbjct: 1718 VLERHAALRTAFVGFEREQPLQIVLA 1743


>gi|152967239|ref|YP_001363023.1| bifunctional glutamine-synthetase
           adenylyltransferase/deadenyltransferase [Kineococcus
           radiotolerans SRS30216]
 gi|151361756|gb|ABS04759.1| (Glutamate--ammonia-ligase) adenylyltransferase [Kineococcus
           radiotolerans SRS30216]
          Length = 1063

 Score = 38.7 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 66/647 (10%), Positives = 142/647 (21%), Gaps = 34/647 (5%)

Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191
           P    +   + A    LA  L  I      E   WE   AL+ E      +   D     
Sbjct: 296 PAPGAAEDDALAVGAKLAVALQRICAEPTGEGALWEVDAALRPEGKSGSLVRTLDSHVEY 355

Query: 192 SKYW------TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245
            + W         L     +         + A A  +   ++    +A           L
Sbjct: 356 YRRWAKTWEFQALLKARPVAGDTALGWDYVSAIAPMVWSASEREGFVADVQSMRRRVEAL 415

Query: 246 MSTVANHPNGAIVLPGLDC-----HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300
           + +        + + GL        +   +     E+     ++     +   Y      
Sbjct: 416 IPSKEADRQLKLGVGGLRDVEFSIQLLQMVHGRTDERLRRSANTLEALESLAAYGYVGRH 475

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
           D  ++ R+   RL            +     LP    D+R         P+      +V 
Sbjct: 476 DAGELDRDY--RLLRSLEHRIQVHRLRRTHVLPVGEDDLRRLGRSLGLRPDPVAALDEVW 533

Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
                + R             L E      L+TA   L         +            
Sbjct: 534 RGTRRDVRR------------LHEKLFYRPLLTAVAKLPAADARIDAQLSPQAARERLAA 581

Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
           L     +  L  L      ++   +I   +   +  +            A   V+     
Sbjct: 582 LGYRDPAGALRHLEALTAGVSRRASIQRTLLPVMLGWIADGADPDAGLLAFRQVSEALAG 641

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
             + +  L+           +          L     E   +  D        +     +
Sbjct: 642 TQWFLTMLRDAGA-AAERLAHVLAAARMPVELLLRSPEAVAVFADDDRLAAEDVSEVTAD 700

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
             +                          +    +      + L+ +   + +    +  
Sbjct: 701 AEAAARRRDDVAAAV----LAVRGVRRREQFRTVVADLVGVRDLAGVGQALSDADQAVLE 756

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG-LNEGVWPKNTA 659
             +           G+ +  ++       +         + D L +   L      +   
Sbjct: 757 VTLRASAREVERRSGQPLPTRLLVVGMGRLGAGETGYGSDADVLFVHDPLPGADETQAQR 816

Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719
               +   ++  L     E  +   A               RSL                
Sbjct: 817 AATEVVAELRRLLAAPGPEPALEVDADLRPEGRNGP---LVRSLSSYRAYYERWSLSWEA 873

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
             L            G+ +L+    L +          +    ++A+
Sbjct: 874 QALLRARPVAGDADLGEAFLELVDPLRWPAGGLPEADVREVRRIKAR 920


>gi|70729515|ref|YP_259253.1| arthrofactin synthetase B [Pseudomonas fluorescens Pf-5]
          Length = 4387

 Score = 38.7 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 87/764 (11%), Positives = 196/764 (25%), Gaps = 25/764 (3%)

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
            R + +E     +   P  ++L  + E +          +  P+    R L   +      
Sbjct: 2713 REQLLEGCNASTADYPRGQTLHGLFEARAAQAPDAVALVQGPLRLSYRQLN--QQANQLA 2770

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
             +L ++         L L   P     L   LA +             L A +       
Sbjct: 2771 RQLLELGVHPDDRVALCLQRGP---HLLRGMLAVLKAGAAYVPIDPS-LPAERIAYLLQD 2826

Query: 181  WLLAADFLKIASKYWTERLV--ELNASSPVGYQIALMRAEAEHLMKGTKGPIII-AGSTG 237
                A  ++ A++     L    ++       +  L      HL       +I  +GSTG
Sbjct: 2827 SAPLAVLVQSATRELPGSLAVVSIDLDGVAWQEAELGNPLLPHLTPAHLAYVIYTSGSTG 2886

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                      ++ N  +       L     ++    +   +       T  S    +   
Sbjct: 2887 LPKGVMVEHQSLENLVHWHCASFDLGPGRHSSSVAGLGFDAMAWEVWPTLCSGATLHLPP 2946

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
              +   DI+           +  +  + V   +F         +T ++            
Sbjct: 2947 ADVGSQDIEALLHWWRAQPLDVSFLPTPVAEYAFSQGLGHPTLDTLLIGGDRLRQFAADP 3006

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
              A+I      E  +  +     +         +  A   L   ++  + +        A
Sbjct: 3007 GFAVINNYGPTEATVVASSGRIEAGSALHIGRPVANARLYLLDELQRPVPQGVSGELYVA 3066

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  ++    +    +    +         A + +         +  L       + V +R
Sbjct: 3067 GAGVARGYLNRPQMTAERFLNDPFSAEPEARMYRTGDLARWRADGNLDYLGRNDDQVKVR 3126

Query: 478  GNKNSYDIMD---LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
            G +     ++   L    L           +  + +  +E  +  A  L DH+   +   
Sbjct: 3127 GMRIEPGEIEAALLTHPALKEALVLVREGRLLAYFTSRTEGVQAAAEDLRDHLQGRL--P 3184

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE-EEGKTLSSLFSKIIE 593
                         + ++   KL    L     +       +  E E  + L+ ++S++++
Sbjct: 3185 DYMLPVAYVRLPAMPLTANGKLDRKALPPPGEEAWLNREFVAPEGEVEQALARIWSEVLQ 3244

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
              +  + +    +   + L      + +         +   +  L      +  G    V
Sbjct: 3245 VEAVGRHDHFFELGGHSLLAVSLIERMRQIGLDADVRVLFGQPTLAALAAAVGSGREVAV 3304

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
                   +          L     E      A         + +     L+E  +    S
Sbjct: 3305 PANRITADCPRITPDLLPLVELEQEAIDRVVASVPGGVANVQDIYPLAPLQEGILYHHLS 3364

Query: 714  R------WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA-- 765
                    LQ  L        D+     Q  ++    L         K+P      +A  
Sbjct: 3365 ARQGDPYLLQSQLAFASRQRLDDFAAALQRVVERHDILRTAVLWEGLKQPLQVVWRQAGV 3424

Query: 766  --QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
              Q    + ++ + L        AR +          +     D
Sbjct: 3425 QVQEVQANPAQGEVLEQLQARFDARHLRLDLTRAPLMRLVYAQD 3468


>gi|83747303|ref|ZP_00944344.1| Acetyl-coenzyme A synthetase [Ralstonia solanacearum UW551]
 gi|83726003|gb|EAP73140.1| Acetyl-coenzyme A synthetase [Ralstonia solanacearum UW551]
          Length = 941

 Score = 38.7 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 38/458 (8%), Positives = 94/458 (20%), Gaps = 6/458 (1%)

Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE-EAISIA 375
           ++               P         + +     ++          A      +     
Sbjct: 67  TDPQIRHRRTAGALPARPGHGPRDRRVLPDRAAGRLRGQQPAHPRRAARRPVGTQRQQAV 126

Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              R + +   +     +  R           R+      +AG          +      
Sbjct: 127 RDQRHAREARHRVCRDRSRRRQARPLGLHRPDRYAGLPRRTAGAQARHPRLGHLPDHARR 186

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
              +           + P  +   P +   R ++A      RG +    +      V   
Sbjct: 187 L--RRAAGEPAGRTRRGPEDRAVQPRRRAHRHRSAGGRHCARGVRCGAPVRQRARPVRQG 244

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555
            A   ++      +   + E +  A        Q    L        + C      D  +
Sbjct: 245 AARAPDH-RQHAGRHGHAPERRAPAGAPRGPAAQPGQALPVRGIAGQALCVRAGRGDLLE 303

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615
                 +       R+   L        L        +     +      +   T+    
Sbjct: 304 GDPDPRRLRLSRRLRRRAPLPRRAHHADLRRHQRSPADGDRAARLAPAHALP-PTQSAPP 362

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
                  E+++      T    L           +                +      L+
Sbjct: 363 RRRGDHDERNACDDRYDTRGPALYRGTRPAAAVSHRLRTRGPRIPLARAGHLQLGAGLLR 422

Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735
                  Q A        +  L  + +        +A  +L+ L ++ G      L  R 
Sbjct: 423 RHRAGNDQTALWIVDDPHSEGLRLSYAQMSERSSRVA-NFLRGLGIVRGDRLLLMLPNRV 481

Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773
           + +      +                 +  + +    +
Sbjct: 482 ELWDVMLAAMKLGAVVLPATTQLAPDDVRDRVQLGGAT 519


>gi|152988349|ref|YP_001347447.1| hypothetical protein PSPA7_2074 [Pseudomonas aeruginosa PA7]
 gi|150963507|gb|ABR85532.1| hypothetical protein PSPA7_2074 [Pseudomonas aeruginosa PA7]
          Length = 1193

 Score = 38.7 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 65/638 (10%), Positives = 144/638 (22%), Gaps = 31/638 (4%)

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
           AR     A     A +   L              +    +             LA+ L  
Sbjct: 186 ARWFLASAQPGRAADIYRQLAETEADPARRLDYLRQAFASLLAGERGEQAALLLAEHLGE 245

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
           L      +  L        G            D ++         +  +     +D+ L 
Sbjct: 246 LPDDTRSLAWLAEGVRAAEGNQRY--------DLAERFVERWRTLRPGDSDAVAADLRLN 297

Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
            A    E A +I   L     + +   A +          +  L  +   +  +    L 
Sbjct: 298 MASGRIERAWAIGQELLALRPDERTLLADLARLGEWTGNTREALGFWMQLLAGNDDPALR 357

Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
                           ++ DF     L+    A+    ++ L     + E         +
Sbjct: 358 EH--------AWRLSLQMFDFDNAIELLTPIGAQRQMSDEELDTLVYSHETRGTPEEGEA 409

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
           +    L+     R+A Q+    + H  ++  +E+ E+   +  H    I   + +     
Sbjct: 410 WLRTYLERYPKQRLAWQRLQQILEH--TQQLQEETEVWARMARHFPLSIKERMQWAETHW 467

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
           +                           +    W  E  +   + + +++  G  + ++ 
Sbjct: 468 NLFDPRQAWKVLDAADEHAIREAEFWRLRAALAWALERDEDARAAYERMLALGIRLNSSD 527

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
                     +         +K+  + I     SR        L                
Sbjct: 528 -------EDQLITLYRDSDPKKALRILIGSWQRSRDPRRLASALQLAENLHDWPTLRSLL 580

Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
             +  +              + A           L      R      +  R L   +  
Sbjct: 581 AEAEGVPQAQGSPYYWVARARLAEQEGRGEDAERLYRQALARFPGENLVRERLLWFYVER 640

Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
           G  D    L  + +        L       +    +    L         +    L    
Sbjct: 641 GRRDALAPLLTQWRGLARRDSTLWLPFASANLLLERNDQALAWFRLYLKSNPNDWLAQAA 700

Query: 783 YAVYARR-ILKLDFIPHFKKDPDRTDRGTLF-----HNIITELIKKRINKNTPEINHLMK 836
           YA        +   +   +    R +RGT+            L+         +      
Sbjct: 701 YADALDASGYRDRALRLRRYLLGRIERGTVRATPDSFAAYLRLLAVAQGPLLAQEEARRA 760

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
              +    +      +D +       +   +L    + 
Sbjct: 761 WNGEPAMLQLWFEQFLDQLAATNQDALKDGWLAWARER 798


>gi|121606564|ref|YP_983893.1| putative chaperone protein, HscA/DnaK [Polaromonas
           naphthalenivorans CJ2]
 gi|120595533|gb|ABM38972.1| putative chaperone protein, HscA/DnaK [Polaromonas
           naphthalenivorans CJ2]
          Length = 966

 Score = 38.7 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 59/521 (11%), Positives = 118/521 (22%), Gaps = 42/521 (8%)

Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184
           D+      ES +        A   A  LA ++D                           
Sbjct: 282 DLALAHAVESRMGGTAGAPAAPLSASRLAQLMDRCR--------------------AAKE 321

Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244
                 A +     L+   A    G +  ++  E           +I+ G          
Sbjct: 322 LLLAADAPEQAPVTLLGGGARLIGGSRSVMLAREE-------VERLIVDGF-----FPQV 369

Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304
                       IV  GL      AI   I +                            
Sbjct: 370 DAGAQVQQARSGIVAFGLPYARDAAITRHIADFLRQHGPQMPAALLLNGGVFRADALVRR 429

Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364
           + +      G     ++  +  ++ +        +      + + P I    +    +  
Sbjct: 430 LAQTLGGWRGEPLRLLHNDNPDVAVAR-----GAVAYALSQKGQAPRIGGGSARSYFLRL 484

Query: 365 DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424
           D+ R  A +  I +     E  ++  L     +L     +    F    D +   P   +
Sbjct: 485 DDSRGSAKARGICILPRGSEPGQEMLLKDRSFSLRVGQPVRFQLFSAVADEAGQAP---S 541

Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484
               ++T   +A+      + +        A  G P          L             
Sbjct: 542 RLGELVTLNEDALV-RLPPLVMVLQAAPGAAASGQPAPSRQDIPVQLATSLTEVGTLELH 600

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
            + L       +                S ED+ LA  + D I Q      T K   +  
Sbjct: 601 CVSLLDAGQRWLLAFALRQPDADAAGPRSPEDRRLAARMTDAISQIDRIFGTNKQQVSPK 660

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
                 +   +L     Q       +    LW    G+  S+   ++    +        
Sbjct: 661 DVTQLRAQLERLLGDRAQWTTPVLRQLFDALWQRARGRRRSAEHERVWLNLAGYGLRP-G 719

Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645
           + D +      +           +            +  + 
Sbjct: 720 FGDALDAWRVQQLWTLFAPGVQHVNDKQVGAEWWTLWRRVA 760


>gi|182438462|ref|YP_001826181.1| putative DNA helicase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466978|dbj|BAG21498.1| putative DNA helicase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 641

 Score = 38.7 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 40/515 (7%), Positives = 122/515 (23%), Gaps = 29/515 (5%)

Query: 31  VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90
           ++       + L    + +   ++ A++ELR     +  +++  +  +++          
Sbjct: 49  LDALLGHEEDALEAGEILVLSFSRAAVRELRERIA-LHARQARRV-RVQTFDSWAYSVLR 106

Query: 91  ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150
            +              +R+ E    IL    +  +     +        +          
Sbjct: 107 GEQPDRDWGALRFD--ERIRETTEAILRGAVEESEQGPPAHVVIDEVQDLVGDR----RD 160

Query: 151 NLADIIDIIE------TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204
            +  ++D  +            + +   +             F       + + LVEL+ 
Sbjct: 161 MVETLLDRFQDSCGFTVVGDGAQAIFGFQVSDQDARAAETNYFFDWLRASYPDDLVELHL 220

Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
           ++    +    R       +  + P   A S  +     R ++ +             D 
Sbjct: 221 TTNFRARTEEARTALAVGAELKRLPSEPAESDAAGEKFHRRLTDLLRSC--------PDF 272

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                 +   + ++   T +           L++ L  L +     + L          +
Sbjct: 273 GPLEDPFTVGSLRAYPGTCAILCRDNRQALVLSEALFSLGVGHRVQRAL-QDRPVPAWVT 331

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI--EADNEREEAISIAIALRMSL 382
            V+  +       +     +    I  +         +   A          A+   ++ 
Sbjct: 332 SVLRGTGTTTLAEERFQELLSAGPIAPVGDRTRIWRSLRGAARAPGGLMDVAAVRRLVAE 391

Query: 383 DENKKKSALITADRNLARRVKLE----LTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
                  A +   + +   V         R  +    +         H        +   
Sbjct: 392 GRFPDDLAAVEPAKLVVSTVHRAKGLEFDRVIVVEPATTAELRKQHTHVDPAAEARSLYV 451

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
            +         +  P       +K   R         +R    +      +         
Sbjct: 452 AMTRARDDLFRIAAPDTALVRRDKVTERWYLGGWKSYIRDGIVASGQDVGREHPPGTDGF 511

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533
             + + +  + +       EL +     +   +  
Sbjct: 512 TDDASSLQDYLAASVSPGDELVLRTQHEMPMAVDQ 546


>gi|39725434|emb|CAE45670.1| borrelidin polyketide synthase, type I [Streptomyces parvulus]
          Length = 1607

 Score = 38.7 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 65/628 (10%), Positives = 139/628 (22%), Gaps = 19/628 (3%)

Query: 256  AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
            A+V+P      P   W     +                 S        D     V  LG 
Sbjct: 975  AVVVPAGHEDDPVVDWVCSALRDHGGEPERMVLGPRESRSALATRLAADPPGGVVSLLGL 1034

Query: 316  VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE--ADNEREEAIS 373
                     ++ S        +   +   +   +  + +        +  A     +  +
Sbjct: 1035 SGAAHPDHEVLPSAVAGTVLLAQALSDGAVRAPVWTLTRNGVSATATDPVAPTHAAQVWA 1094

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433
            +A   R++  E+ +                 +         +SAG               
Sbjct: 1095 VA---RVAGLEHPEAWG----GLLDLPDRLDDRAAARFAAVLSAGEDEDQLALRDAGLLA 1147

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-GNKNSYDIMDLKSLV 492
               +       A+    +                + A  L A    +         ++  
Sbjct: 1148 RRLVRAPVPRDAVTAGWQPRDTALVTGGTGGLGGQVARWLAAAGVRHLVLVSRRGAEAEG 1207

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
             DR+        V          D+     L+D + +   P+ T      S      +  
Sbjct: 1208 ADRLRDDLTALGVQVTFGACDVADRAALSALLDRVQEDGPPIRTVVHAAGSGRAARLLDT 1267

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              + T   L+            L   +     SS       +     A A  ++D +   
Sbjct: 1268 DAEETAAVLRAKSAGARNLHELLDDVDAFVLFSSGAGVWGSSAQGAYAAANAYLDALAEQ 1327

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
              G+               G   +    + +               A +     V +++ 
Sbjct: 1328 RRGQGRPATSVAWGAWAGDGMTAAAGEEWWSRQGLRF----MAPEAALDALRQAVDRAES 1383

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
             L  A+      A  F  A           + E           Q    L       +  
Sbjct: 1384 TLVVADIDWKTFAPLFTSARSRP---LITDIPEARPEPRPEGADQPTQGLVAKLAVLSAD 1440

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
            +R +  L   R               P      +    S S +K L N   A     +  
Sbjct: 1441 ERRRALLAEVRAQAAVVLGHPGADAVPVDRPFRELGFDSLSAVK-LRNRIVAATGLELPA 1499

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                 H          G     I        + ++   +   +  +  +   +       
Sbjct: 1500 TLVFDHPTSTALAAYLGARL-GIDGAPAGSTLLEDLARLESTVATLTAAPLAETVPDARD 1558

Query: 853  DIIWRHLFHKISHSFLEHEEKIQSSIEK 880
                      +   + + + + Q++  +
Sbjct: 1559 RAALTTRLRALLERWDQADGEDQAAARE 1586


>gi|166712095|ref|ZP_02243302.1| hypothetical protein Xoryp_11725 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 1388

 Score = 38.7 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 59/670 (8%), Positives = 161/670 (24%), Gaps = 46/670 (6%)

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
                +R          K      GS  +  A   L  T A               + + 
Sbjct: 288 RLENALRDARARGDALAKAVFFGRGSAQATEAEQALARTNAQIDQLQSAYAQARDALQSD 347

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             ++      + T ++   +   Q  +  L   L    + +      +      +  + +
Sbjct: 348 QASSSASAPASRTLASHLAAEQSQ-EIQALRTQLARDEQMLSLQSVHAERCQRNARRLQE 406

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
             +  + +  +           + +    V+ +EA N   +      A+  +  ++    
Sbjct: 407 RLVQVEATLKQAQHSSRVNTTELWQQDHTVSALEAANGDMQ-----RAVETAAAQSPADE 461

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A    D ++A  +   L             P+S  +  +    L                
Sbjct: 462 ARRAPDDSVAEAMAALLD-ALPGFREDTIGPMSRQVLRTWAEGLHR-------------- 506

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
                 +         +  +AL +     +  S       + VL R+   +    +P  Q
Sbjct: 507 ------RSAAFGTDALQPVDALNIALQALSIASQSDATTAANVLQRLGEVQLRELIPPPQ 560

Query: 510 SRLSEEDKELAVLLVDHILQCIT-----PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
              + E       +   +   ++      ++ +   +  T       +  ++ +   Q +
Sbjct: 561 VSNAAEAVPPMEAVTTCVGLLVSVPRGMQVLLHMLREEPTAPAREWLEAAQVHLRASQRL 620

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
            L    +     +    +  +            +++           + +G         
Sbjct: 621 ALTPDAQQAERAWLANAQMGARHAVHGATPLQGLQSATDAQRSAFHAIRNGYETTRAGSP 680

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
            + +     + ++         G      +          +         +  + +   A
Sbjct: 681 YARVNASLQMFAQWAVAGGQTRGKRALNPFNALKLGMKVGASEALPTAGRRANDAFREAA 740

Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
            H        RH+  T     +                           +   +     +
Sbjct: 741 GHLSNWLVARRHIQMTCGQLPSQDELAMQAL--------------AECVQWLPHEQSATE 786

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
           L +T K       +     ++   + S ++ +Q      A+ +  +          +   
Sbjct: 787 LIFTAKVLAEIEQRARELQDSVTASLSTTDARQPAACHPAIASAWVALRTSRMRLPETMR 846

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
              RG L H I              E+  L +          +   H     R    +  
Sbjct: 847 LIQRGLLDHAIQPNDTPAGAAPLDKELASLARNHFHQAVGNASRFLHEGDTSRVRSPRAL 906

Query: 865 HSFLEHEEKI 874
            + L +  + 
Sbjct: 907 FACLRNMMER 916


>gi|315445097|ref|YP_004077976.1| condensin subunit Smc [Mycobacterium sp. Spyr1]
 gi|315263400|gb|ADU00142.1| condensin subunit Smc [Mycobacterium sp. Spyr1]
          Length = 1194

 Score = 38.7 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 71/798 (8%), Positives = 173/798 (21%), Gaps = 67/798 (8%)

Query: 95  LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154
           L+  L   +  + R  E+AR     +  L D    L  +  ++      +       L  
Sbjct: 194 LTTELRRQLKPLGRQAEMARRAQTIQADLRDARLRLAADDLVARKAEFDDTDQAETTLRR 253

Query: 155 IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214
             D +                          +       + T        +     +   
Sbjct: 254 EHDELTE---------------------RLQERAAELDAHETAVEDLSERADAAQQRWFR 292

Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274
           + A AE +                            +         G D     A  + +
Sbjct: 293 LSALAERV----------------SATVRIASERAQHLDGDPDFSAGPDPDELEAQADAV 336

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
            E+   +           Q  L    + L  + +                    +     
Sbjct: 337 AEQEQQLLDELAES----QERLEAAREELAEREQAAAEAERAHMAAARAEADRREGLARL 392

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
                     +E+    + +  +++    A  +  +A    +  R+   +  +       
Sbjct: 393 SGQVDTMRTRVESVDETVARLTANIDDAAARAQLTQAEFETVQARVGELDAGE-----VG 447

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                 R    L      +        +     + L + ++A+    D    A  ++   
Sbjct: 448 LDEHHDRSVAALRLADERVAELLAAERAAERQVASLQARIDALSVGLDRRDGAAWLQENH 507

Query: 455 AK---------------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
           +                             A  L A         +  LK     R A  
Sbjct: 508 SGAGLFGSIANLVKVRAGHEAAIAAVLGAAADALAAEDFGAARAAVAALKESDGGRAALV 567

Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
             +       +         AV LV+   +    +    +         +  D       
Sbjct: 568 LGDWPAQEAVTGQLPAGAAWAVDLVEPSDRVRGAVTAMLSGVAVVENLTAALDLVAAQPR 627

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                   +      +    + K  +      ++       +A      ++  + G   +
Sbjct: 628 LRAVTADGDLVGAGWVSGGSDRKPSTLEIQSEVDRARSELVDAERRTGELSAALSGALAE 687

Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
               + +    L  L         +    L         A + +   + Q D       +
Sbjct: 688 QAARQDAAEHALAALNESDAAISAIYE-QLGRLGQDARAADDEWQRLIRQRDEMEAGRNR 746

Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
            + + A         +      +   +     A+    R   +         ++R     
Sbjct: 747 TVSELAELELRLQNAQQEPMFDAEVVDRTEYTAAAEAARSAEVEARLSVRTAEERANAVR 806

Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                L          R +     EA+    + +          A      + +      
Sbjct: 807 GRADSLRRAAVAEREARVRAQRAREARVHAAAVAAAVAESGRAVAQRLADAVSVASRIRD 866

Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
           +   +R  R         E+     N+ T  I  L   +      K      I+ + + +
Sbjct: 867 EVAAERQVRAGALTKAREEV-----NELTARITALTDALHRDEVAKAQAALRIEQLEQQV 921

Query: 860 FHKISHSFLEHEEKIQSS 877
             +   +  +   +    
Sbjct: 922 LEQFGMAVADLVAEYGPD 939


>gi|262195896|ref|YP_003267105.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
 gi|262079243|gb|ACY15212.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
          Length = 1273

 Score = 38.7 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 54/633 (8%), Positives = 135/633 (21%), Gaps = 39/633 (6%)

Query: 73   TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132
             +LP      D +             L   V+ ++R   +          +     D  P
Sbjct: 640  LLLPAEYPPADFLRALVAWAGGRPLYLARLVAELKRRGLVRPRASGGGYYVAAGEFDRMP 699

Query: 133  ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192
             + +   ++      +   LA    +       +                     L    
Sbjct: 700  AAAVEQWLASRELDSMTPELAACARLCAVLGTTF-----------------LQAELAHVL 742

Query: 193  KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
                                +L++      +   +        T +  A    +  +   
Sbjct: 743  DALERAGGAGTTMDAGVGLSSLVQRGLIQELAPGR-------FTFASAAFREAIHALLGA 795

Query: 253  PNGAIVLPGLDCHIPTA-IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
             + A +      +      +      + +  + +     H   +    L   D+ R   +
Sbjct: 796  ADRADIHAHASDYWRRQLAFRAANPFALDRFAHHAEACGHRGEAARAYLRLGDMARTGYR 855

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                 S        +        +  +       ++    +                   
Sbjct: 856  DSSADSLYSAALRALTDARPNSREDGEQGGRADDDDPAGQLHAAVLGGRGHVRYRLHRIG 915

Query: 372  ISIAIA-----LRMSLDENKKKSALITA-----DRNLARRVKLELTRFGINIDISAGIPL 421
             ++A       +  +  + +   AL+       D         E          +  +  
Sbjct: 916  EALADLRDARVVAEARGDQRSAIALLLEEATALDWAGRFEESSECAEQARARARAHHLDG 975

Query: 422  STTLHSSIL-TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
                 S+ L  +   + ++          + H +A         S   + L +       
Sbjct: 976  EDEPLSAPLALAAGRSHWRRGQVREAIAALDHAVACARQVGDEQSECISLLLVALALVLD 1035

Query: 481  NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL---AVLLVDHILQCITPLVTY 537
               D  +L+   + R      +                    A   V  + + I      
Sbjct: 1036 GQLDEAELRFSEVIRRCEANGDGLHLCGAYANRMFLWSARKHAERAVADLRRAIAVAREI 1095

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
                  T    ++++    +    + + +       +  F E      +L    I     
Sbjct: 1096 GNPAPETTATHNLAELLYWSGDDDEAMAMANRALRLHERFGEADIPEHALLVARIHAARG 1155

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
              A A   +  I      E+          +  L    S            L E      
Sbjct: 1156 EIAEAHAQLTWIESECAEESRSTATRVLEDMLRLVIASSTRRPVHAGDWNELLERAREAV 1215

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
              +        Q+ L ++ A       A +   
Sbjct: 1216 PGEELVEILWWQARLAVRLARWREAARALEEAR 1248


>gi|114318824|gb|ABI63498.1| UL36 [Human herpesvirus 1]
          Length = 3153

 Score = 38.7 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 73/806 (9%), Positives = 182/806 (22%), Gaps = 72/806 (8%)

Query: 75   LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134
            LP   ++GD +     +   ++ +L               L+    ++   I +    + 
Sbjct: 617  LPRKTAVGDFLASTRLSLADVAAHLP--------------LVQHVLDENSLIGRLALAKL 662

Query: 135  PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
             L +             LAD+   ++       +L           +    ++L   S+ 
Sbjct: 663  ILVVRDVIRETDAFYGELADL--ELQLRAAPPANL-----------YTRLGEWLLERSQA 709

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
              + L      +     +  ++A A+                         +  +A   +
Sbjct: 710  HPDTLFAPATPTHPEPLLYRVQALAKFARGEEIRV------EAEDRQMREALDALARGVD 763

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
                  G    +P                         +    +    ++   ++    G
Sbjct: 764  AVSQHAGPLGVMPAPAGAAPQGAPRPPPLGPEAVQVRLEEVRTQARRAIEGAVKEYFYRG 823

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
             V +    ++   +       ++ +     L   +P   +   D+A   A          
Sbjct: 824  AVYSAKALQASDNNDRRFHVASAAVVPVVQLLESLPVFDQHTRDIAQRAAIPA------- 876

Query: 375  AIALRMSLDENKKKSALITADRNLARRVKLE---LTRFGINIDISAGIPLSTT-LHSSIL 430
                          +A++  D     +       L  +   +  +A   L        + 
Sbjct: 877  ------PPPMATSPTAILLRDLIQRGQTLDAPEDLAAWLSVLTDAANQGLIERKPLDELA 930

Query: 431  TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490
             S+ +   +     +    ++              +  +    V   G     D   L  
Sbjct: 931  RSIRDINDQQARRSSGLAELRR---FDALDAALGQQLDSDAAFVPAPGASPYPDDGGLSP 987

Query: 491  LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
                                  +E   +  V L +        L      + +     + 
Sbjct: 988  EATRMAEEALRQARAMDAAKLTAELAPDARVRLRERARSLEAMLE--GARERAKVARDAR 1045

Query: 551  SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI-I 609
              +       L+ +      K           +L + +S + E            +   +
Sbjct: 1046 EKFLHKLQGVLRPLPDFVGLKACPAVLATLRASLPAGWSDLPEAVRGAPPEVTAALRADM 1105

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP--FLSRV 667
              L+       +     T   L  L    +     +     E  +      +    ++  
Sbjct: 1106 WGLLGQYRDALEHPTPDTATALSGLHPSFVVVLKNLFADAPETPFLLQFFADHAPIIAHA 1165

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
            + + +N  +A       A   + A     ++           +  +  L  L  +  +  
Sbjct: 1166 VSNAINAGSAAVATADPASTVDAAVRAHRVLVDAVTALGAAASDPASPLAFLAAMADSAA 1225

Query: 728  FD------NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                     L  RG      T            +R    P  E      + +       +
Sbjct: 1226 GYVKATRLALDARGAIAQLTTLGSAAADLVVQVRRAANQPEGEHASLIQAATRATTGARE 1285

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR-INKNTPEINHLMKQIID 840
              A +  R   L        D   + R       + EL K     +   +        + 
Sbjct: 1286 SLAGHEGRFGGLLHAEGTAGDHSPSGR------ALQELGKVIGATRRRADELEAATADLR 1339

Query: 841  SHFEKENLPPHIDIIWRHLFHKISHS 866
                 +         W      +   
Sbjct: 1340 EKMAAQRARSS-HERWAADVEAVLDR 1364


>gi|299472716|emb|CBN80284.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 2911

 Score = 38.7 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 38/448 (8%), Positives = 115/448 (25%), Gaps = 29/448 (6%)

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
            LAK    E         L++      ++   +  L    L+R+ T +             
Sbjct: 1306 LAKEIAEEARAHEWLLRLQVELPDALRDKEALERLPDAALNRLDTLRWEERRAGRMIECR 1365

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK--------LTVTCLQNVC 565
                EL   LV+        L   +     +     +++             +  + +  
Sbjct: 1366 RRVAELRESLVEEGR-RRRQLYEERKWVVQSEFRRLLAERAAVGEKEGMIRLLVKVGHAT 1424

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
            L   R       +E  +    + ++   +   + +   +W+    +    E  + + + +
Sbjct: 1425 LVAQRSTFEARKKEAAEDKDGVGTEGTVSPGDVYSAHRDWVSEEFQEAAKEQKRWEDKLA 1484

Query: 626  STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
              + I               L              + +L +  +         ++  +  
Sbjct: 1485 EMVRIRELARR--RETTVGELVQGAARGALPAPHPDQWLPKAEKQ--------RHEDEVR 1534

Query: 686  HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
                       +              A+R +  L    G        +           +
Sbjct: 1535 LLLGRHARELRVEQEAVESSCVRVREAARDVAILKAKLGAIEGWRDHEILTLRTAGREAV 1594

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
            D        +R +    ++   +  S     +L  +   V A    +++ +   + + + 
Sbjct: 1595 DSLKGLLEKQRKESAARIDKLEQALS-----ELRKEYNEVRAELTARIEQLNRGRSNTEA 1649

Query: 806  TDRGTLFHNIITELIKKRINKNTP---EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862
              +            ++          +   ++ + + +    E +      +W    H 
Sbjct: 1650 WVKALRHDLAQERAKREAAEDRLAIVKDRARVLSEKLRTELRAERMHSLRLELWIAALHD 1709

Query: 863  ISHSFL--EHEEKIQSSIEKIFVNIPAK 888
                 +  + E +   ++E+I      +
Sbjct: 1710 EIRFHIKTQEEMRRLQALERIEHERQKR 1737


>gi|307826346|ref|ZP_07656551.1| amino acid adenylation domain protein [Methylobacter tundripaludum
            SV96]
 gi|307732606|gb|EFO03478.1| amino acid adenylation domain protein [Methylobacter tundripaludum
            SV96]
          Length = 6516

 Score = 38.7 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 90/727 (12%), Positives = 179/727 (24%), Gaps = 61/727 (8%)

Query: 2    HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61
              +   VF + PSSP    ++ AL    L  +      +   L   ++     R +  +R
Sbjct: 659  PERGGAVF-VPPSSP-EETLLAALFGEVLGLDRVSVADSFFALGGHSLLA--TRLVSRVR 714

Query: 62   SEFIEITGKKSTI-LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
              F      ++    P +  L   + +  +A L L       +   +RL        +W 
Sbjct: 715  EAFALELPIRALFEAPTVAQLAGRLRDLRSARLPLQ-----ALPRPERLPLSYAQQRLWF 769

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI--------------IETEEKKW 166
                +     Y            +A      L D++                   E    
Sbjct: 770  IHRLEGPGSNYNIPIALRLSGHLDADAFDSALLDLLARHEALRTRFPEFDGIAAQEIVPV 829

Query: 167  EDLHALKNEKYGMWWLLAADFLKIASKYWTER--LVELNASSPVGYQIALMRAEAEHLMK 224
             +L +L          LA    + A         L                 A  E ++ 
Sbjct: 830  SELTSLLTRCPVTEAELAVQLQQAADTALDITVDLPFRAWLFSSTPLSTGSLANEEQVLL 889

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                 I   G++ ++ A    ++  +     A   P L                     S
Sbjct: 890  MLVHHIAADGASMAVLADDLTLAYSSRCMQQAPAWPDLTIQYADYALWQRQSLGAVDDPS 949

Query: 285  NTTYSTHP--QYSLAKLLDFLDIKREDVKRL------GNVSNEMYGRSMVISKSFLPPDT 336
            +         Q +L  L D L++  +  + L      G +   +         +    + 
Sbjct: 950  SPMAQQLAFWQQALRGLPDELNLPTDRPRPLVSSYRGGALPIHLSAELHRNLLALAQTEQ 1009

Query: 337  SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI---------AIALRMSLDENKK 387
            + +             +    +   I A        +I         A+ LR  L     
Sbjct: 1010 ASLFMLLQATLAALLSRLGAGEDIAIGAPIAGRTDQAIEGLIGFFVNALVLRTDLSGRPS 1069

Query: 388  KSALI--TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
               ++      +L      +L    +   +     ++      ++ +L N   +    + 
Sbjct: 1070 LRTVLQRVRAFDLDAYAHQDLPFELLVDALQPTRSMARHPLFQVMLALQNTA-RPRMDLP 1128

Query: 446  IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
               +   PLA+ G     L              +     +        D   T       
Sbjct: 1129 GLNVAMEPLARTGAKFDLLVSLAEQ-----YDADGEPLGLWGELEFSSDLFDTDTVEHLS 1183

Query: 506  PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL--QN 563
              W S + +   E    L    L             N+T   +  +    L         
Sbjct: 1184 RRWLSLIEQAVAEPDAPLYQCALLTPEERHALLEGFNATARPIPDATLPALFEAQAASNP 1243

Query: 564  VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID--------IITRLIDG 615
                       L + E     + L   +I  G+  ++    ++D        ++  L  G
Sbjct: 1244 AATALVFGDQELSYGELNTRANRLAHALIAQGAGPESLIGLYLDRSFELVISLLAVLKSG 1303

Query: 616  ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
                P   +  T  I   LE              +             L+ + Q   N  
Sbjct: 1304 AAYLPLDPEHPTARIEAMLEDATPLRVITTAALADNLPADCPRIVLDKLTDLAQRQENNP 1363

Query: 676  TAEKYIG 682
            +    + 
Sbjct: 1364 SDADRLA 1370


>gi|303246925|ref|ZP_07333201.1| glycosyltransferase 36 [Desulfovibrio fructosovorans JJ]
 gi|302491632|gb|EFL51515.1| glycosyltransferase 36 [Desulfovibrio fructosovorans JJ]
          Length = 2884

 Score = 38.7 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 81/868 (9%), Positives = 195/868 (22%), Gaps = 38/868 (4%)

Query: 54   KRAIQELRSEFIEITGKKSTILP----IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109
            + A +     F +  G +   LP           +       ++ LS   N    +   +
Sbjct: 1018 RGAARRTWHFFAQFVGPRDNWLPPDNIQEYPAEMLASRTSPTNIGLSLLANLAAWDFGYI 1077

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
                 L+      L  + K               +   L       +D            
Sbjct: 1078 GTG-ELLRRTEATLAAMEKLERYRGHFYNWYDTRSLAPLRPQYVSTVDSGNLAGCLLTLQ 1136

Query: 170  HALKNEKYGMWWL-LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228
              L   K        A   L+   +   E +    A         L  A  +   +G  G
Sbjct: 1137 AGLAELKDRPVLSPRALAGLEDTVRVLAEHVSASRAPDIARQVAQLQDALRDARQQGPPG 1196

Query: 229  PI-----IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
             +     ++A  T         +                      A+   +   +    +
Sbjct: 1197 DLTAVGAVLAALTAMGNGLLAALPRDDAADAALHDWVQAFNRQVHALCEELRLFAPGAEA 1256

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                 +         L      +  + +R   V +++  R   ++           R+  
Sbjct: 1257 REHNPTLASLAGEGALTAETPPQAREARRRLGVIDDLLERCHELATMDFTFLYDTSRDLL 1316

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
             +   +   ++  S   L+ +     EA   +  L       +K    +           
Sbjct: 1317 AIGYDVGERRRDPSCYDLLAS-----EARLTSFLLIAEGQLPQKHWFSLGRLLTSHGGDP 1371

Query: 404  LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
              ++  G   +      +  +  +++L     A             V   +++  +    
Sbjct: 1372 SLISWSGSMFEYLMPQLVMPSYANTLLEQTCQAAVSRQIEYGRQRAVPWGISESCYNAVD 1431

Query: 464  LSRAKNALELVALRGNKNSYDIMDL-KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
            L++A                   DL  +     +A             RL+ E  +    
Sbjct: 1432 LNQAYQYRAFGVPGLGFKRGLGEDLVIAPYASALALLVAPREACRNLERLAAESFQGVYG 1491

Query: 523  LVDHILQCITPLVTYKTNK--NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580
              + I      +   K +    +   +             L           P++   + 
Sbjct: 1492 FYEAIDYTPARVPRGKNHAVIRAFMAHHQGMSLLAFAQVLLDEPMQRRFMAAPSIRATQS 1551

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL- 639
                    ++        + +A                         + +L      ++ 
Sbjct: 1552 LLQERVPKNEATLHPHTAEVSAAARPPATEAGAIMRVFTDPDTPLPEVHLLSNGRYHVMA 1611

Query: 640  --------NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-------LKTAEKYIGQA 684
                     +  L +    E     +     +L                L+ AE+Y    
Sbjct: 1612 TSAGGGYSRWQDLAVTRWREDATCDDWGTFIYLRDRDSGRYWSSAHQPTLRPAERYEAAF 1671

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                         I T +    +           L  L        +    +  L     
Sbjct: 1672 VQARAEYRRRDQGIETHTEISVSPEDDVEIRRLTLTNLSAHPRQIEVTSYAEVVLAPQNA 1731

Query: 745  -LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
             L +      + + +  P  +A   T       +     + ++A   +      +     
Sbjct: 1732 DLSHPAFSNLFVQTEILPDRQAILCTRRPRTPDERTPWLFHLFAAPGVAAGEPSYETDRA 1791

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
                RG    N +           +     ++  I+     +         +   +   +
Sbjct: 1792 AFIGRGRTAANPLALSGDGSPQALSNTAGAVLDPIV--AIRRAIPLSPDAAVTVQIISGV 1849

Query: 864  SHSFLEHEEKIQSSIEKIFVNIPAKMAI 891
            + +       I    ++ FV    +MA 
Sbjct: 1850 ADTREAALAVIDKYGDRHFVERAFEMAW 1877


>gi|146281828|ref|YP_001171981.1| ATP-dependent DNA helicase [Pseudomonas stutzeri A1501]
 gi|145570033|gb|ABP79139.1| probable ATP-dependent DNA helicase [Pseudomonas stutzeri A1501]
          Length = 1437

 Score = 38.7 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 79/859 (9%), Positives = 203/859 (23%), Gaps = 56/859 (6%)

Query: 47   VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTAD-------------L 93
              ++V T+R  +       E  G            G +  E+                  
Sbjct: 275  TLVFVNTRRMAERTTRHLAERLGGAVVAAHH----GSLAREQRLTAEQKLKRGELRVLVA 330

Query: 94   LLSYNLNPPVSNIQRLLEL--ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
              S  L   + +++ + +L   R I  +  ++      +   S   L  S  + +     
Sbjct: 331  TASLELGIDIGDVELVCQLGSPRSIAAFLQRVGRAGHQVAGVSKGRLFPSSRDDLIECAA 390

Query: 152  LADIID--IIETEEKKWEDLH----ALKNEKYGMWWL--LAADFLKIA----------SK 193
            L D +    ++T       L      +  E     W        L+ A           +
Sbjct: 391  LLDAVRRGELDTLRIPPAPLDVLAQQIVAEVSSREWQEDALLALLRRAMPYAVLDDDTYQ 450

Query: 194  YWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253
                 L E   ++  G + A +  +        +    +   T            V   P
Sbjct: 451  ALLRMLAE-GYTTRHGARGAYLHRDLATRSLRGRRGGRLTALTSGGTIADNSDYAVLLEP 509

Query: 254  NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313
             G  +    +     ++   + +            +        ++ D   +       L
Sbjct: 510  QGLNIGTVNEDFAVESLAGDVFQLGNTSYRILKIEAGR-----VRVEDAQGMPPSIPFWL 564

Query: 314  GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
            G         S  +++     D            ++  +    +    I  +  ++    
Sbjct: 565  GEAPGRSDELSFAVARLRGEIDQRLASAESQAAERLQPVIDWLAGTPGIPREAAQQIVEY 624

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELT-RFGINIDISAGIPLSTTLHSSILTS 432
            ++ A         ++  ++    + +   +L +   +G  I+ + G+ L          +
Sbjct: 625  LSRARAALGALPTQRRLIMERFFDESGGTQLVIHSPYGSRINRAWGLALRK----RFCRT 680

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
                +       AI   +    +           + +A +++           +  + + 
Sbjct: 681  FNFELQAAATEDAIILSLSTSHSFALDEVWRYLHSASAEQVLIQALLDAPLFGVRWRWIA 740

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
               +A  +              + ++L   +    + C+  +V  +   +      ++ D
Sbjct: 741  TTALALPRMAGGRKVAPQLQRMKSEDLLATVFPDQVACLENIVGEREIPDHPLVRQTLDD 800

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
                 +     + L    +   +          S  +  I             ++     
Sbjct: 801  CLHEAMDSEGWLALLRRMESGEVELLTRDLPSPSPLAMEILGARPYAFLDDAPLEERRTQ 860

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
                      E +  L  L       +  +       ++ +    TA             
Sbjct: 861  AVLARRWSDPESADDLGALDPEAIAAVGAEAWPEARNSDELHEALTALGCIAEAE---AA 917

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                  +++ + A     A     L      R    P     WL+ +      +    L 
Sbjct: 918  GQPHWLQWLAELA----RAGRATRLQVAH-DRALWTPLERLAWLRSIYPQAACEPCLPLP 972

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                  LD    L    +           PL A+P     S +   +    A       +
Sbjct: 973  AGYDQLLDEEEALVELIRARLGGFAPLPVPLIARPLALPASAVALALTRLEAQGYVLRGR 1032

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                    +  +R     +    +  L ++       +    +                 
Sbjct: 1033 FSPGASEDEWCERHLLARIHRYTVKRLRREIEPVELADCMRFLADWQHLSAGTRMQGREA 1092

Query: 853  DIIWRHLFHKISHSFLEHE 871
                         +    E
Sbjct: 1093 LGTLVEQLEGFQAAATAWE 1111


>gi|34766454|gb|AAQ82567.1| FscE [Streptomyces sp. FR-008]
          Length = 7771

 Score = 38.7 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 73/782 (9%), Positives = 162/782 (20%), Gaps = 49/782 (6%)

Query: 110  LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169
            L    L    R  L             +   +      +   L  ++   E++    E +
Sbjct: 4668 LLDPELDRPLREVLFAEEGSETAALLDTTGYTQPALFAVEVALHRLL---ESQGVSPEYV 4724

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--- 226
                  +     +     L+ A +    R   +      G   A+   EAE   + T   
Sbjct: 4725 AGHSVGEIAAAHVAGVFSLEDACRLVAARARLMQELPAGGAMAAVQATEAEIAPRLTEGL 4784

Query: 227  -------KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279
                      ++++G    + A A              V       +   + +   E + 
Sbjct: 4785 SLAAVNGPDSVVVSGPESEVTALAAEFVAEGRKTQRLQVSHAFHSALTEPMLDAFREVAR 4844

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
            ++  +          + A          E   R    +         ++++         
Sbjct: 4845 SLAYAEPRLPVVSNVTGALAAPGQLTDPEYWVRHVRETVRFADGVRALAEAGADAYLEAG 4904

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-NKKKSALI-----T 393
                +       +      V       +R E  ++  AL            A        
Sbjct: 4905 PGGVLTALARQTLGTDSEAVTAPALRKDRAEEPALLTALATLHVTGVPVDWAACFEGTGA 4964

Query: 394  ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS-----LLNAIFKLNDFMAIAT 448
               +L       +  +        G   S  L  +  T+     L      L        
Sbjct: 4965 RRVDLPTYAFQRVRHWPDTRRPGTGGGSSDPLDGAFWTAVEGEDLTRLATDLAVDTEALG 5024

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-SLVLDRIATQKNNTHVPH 507
             V   L+ +    +  +   +       +             + +    A    +     
Sbjct: 5025 AVLPALSTWRRRRRDQAMVDSNRHHETWKPLSLPPGAPAPAGTWLAVVPAAYGEDPWTAA 5084

Query: 508  WQSRLSEEDKELAVLLVDH--ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                +  +   L V  V+   +   +  L             L+++D  +  V+      
Sbjct: 5085 VLDAVGTDVVRLTVDTVERHALADRLRALSADGAALAGVVSLLALADTPEAAVSGDPAGA 5144

Query: 566  LDEHRKLPNLWFEEEGKTL-SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                  +      + G        ++     +  +A        +  L     ++     
Sbjct: 5145 PAAPTAVLFQALLDAGVDAPLWCLTRGAVAVAGSEAVTAPAQAAVWGLGRVAALEHPAVW 5204

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI--- 681
               + +    + R       +L G +        +   F  R++ +              
Sbjct: 5205 GGLVDLPSAWDERAARRFAAVLAGHDGEDQVAVRSSAAFARRLVPAPAAEPGDGWQPRGT 5264

Query: 682  --------GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
                    G+ AH      G          R    P        R  +         +  
Sbjct: 5265 VLVTGGTGGRGAHVARWLAGAGAAHLVLLGRRG--PDAPGADALRAELEAAGARVTLVAC 5322

Query: 734  RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
                       LD          P   P            +       P    A    + 
Sbjct: 5323 DAADRDALAAVLD--------GIPADTPLSAVVHAAAVVDDGVLDDLTPERFAAPHHART 5374

Query: 794  DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853
                H  +     D                  +        +   +      E LP    
Sbjct: 5375 APALHLDELTRGLDLDVFALCSSVAGTVGTAGRANLAAATAVLDALARSRRSEGLPATSM 5434

Query: 854  II 855
              
Sbjct: 5435 AW 5436


>gi|262194007|ref|YP_003265216.1| 6-deoxyerythronolide-B synthase [Haliangium ochraceum DSM 14365]
 gi|262077354|gb|ACY13323.1| 6-deoxyerythronolide-B synthase [Haliangium ochraceum DSM 14365]
          Length = 1984

 Score = 38.7 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 33/422 (7%), Positives = 89/422 (21%), Gaps = 12/422 (2%)

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
                ++ W  +      + S+              +      +    + L   +  +   
Sbjct: 1076 RDTASSAWRVLAPPGHELASALADAFATLPGDGVVVCMPRRPEEPHFELLLEGARAVLAE 1135

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383
            +        P     +++          + +    + +   D    E  ++A  +  +  
Sbjct: 1136 TAGSEVRTRPTRFLLVQHGGGASAFARTLAQEAPHLDVCVVDVPSGEPTAVAHVMAEAHT 1195

Query: 384  ENKKKSALITADRNLARRVKLELTRFGI--NIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
                  A   A     R     L    I  ++ +S    L  +     + +         
Sbjct: 1196 IGNYSEACYDAQGRRTRPALRHLPLAQISGSLPLSPDDHLVISGGGKGIGAECALALARE 1255

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
              + +  L +         +  L+          +R  +          + +        
Sbjct: 1256 TGVRVTLLGR----AHPDDDPVLAANLRRFADRDVRYLQVDIADGRAVRVAMSEAVRLAG 1311

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                    +      + +  L        + P V    +        S+           
Sbjct: 1312 RPVTAILHAAGHNRPRRIRDLDAAAFRATLAPKVDGIGHLLDAVEPASLRLLVAFGSVIA 1371

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            +     E        +      L+             +   IEW       +        
Sbjct: 1372 RVGLHGEADYALANEW------LTRRIEDWRAAHPHCRCLCIEWSVWSGTGMGERLGHID 1425

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
                + +  +   E   L FD L    L   +     A     +       +     +  
Sbjct: 1426 ALIRAGITPVPIDEGIGLLFDLLRRLALEPAMPVGIVACGRLGTPPTLRWAHEPLPLRRF 1485

Query: 682  GQ 683
             +
Sbjct: 1486 LE 1487


>gi|170749100|ref|YP_001755360.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655622|gb|ACB24677.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
          Length = 960

 Score = 38.7 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 60/524 (11%), Positives = 120/524 (22%), Gaps = 22/524 (4%)

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
              EDL               A  ++     W     EL+  +    Q A +  +A+ + 
Sbjct: 116 VLAEDLVIAAERAQSERAARTAQAVQAGVASWESLRRELDPVTVRPDQAAALERQADAVE 175

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE------- 276
                 I +    G     A     V      A  +  +        W            
Sbjct: 176 GQIDLLINVMAGDGFTFRQAARQRVVGAIRWHAAAVALVILACGLIAWLLTRRISGSVSA 235

Query: 277 -----KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                +       +    T  +  L++LLD +   R  ++ L         +  V     
Sbjct: 236 AAEAAERIAGGQLDDRIPTGGRDGLSRLLDAVAAMRSTIRALTL---REVSQRRVAEALV 292

Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS----IAIALRMSLDENKK 387
                +      +++            +      +   EA      IA   R    E   
Sbjct: 293 TDALQTSREGVVVVDADGRIALANAQALRFFVGLDAAIEAGLSLTRIADQPRDKHREVLD 352

Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
                 A     R       R   +     G     +  S +               A  
Sbjct: 353 DCFRALARDGDIRLADGRWLRVSRSATRQGGFIAVCSDISVLKEQERRLTQTNLRLDAAL 412

Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
             +   L  +    + +   +   E+  L        +  L+ L     A       +  
Sbjct: 413 DTMSQGLCLYDGQSRLMVVNRRYSEIYGLPPGAVVPGMTALEVLSASLAAGNHPGCDLEA 472

Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567
              +  +     A       L     +   +          +  D T+      +   + 
Sbjct: 473 LLRQQRDAFSNGAWQTHFQELSNGRIVAIDRREAADGGFVATYEDVTERRRAEARIAFMA 532

Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627
            H  L  L           +              AI+  D        ET+   I     
Sbjct: 533 HHDMLTGLPNRVAVGQQIDVAVAQAGRDQGFAVFAIDLDDFRPV---NETLGHGIGDELL 589

Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
           + +   L + +   D +   G +E +  +     P  + ++   
Sbjct: 590 VAVANRLTACVREIDCVARLGADEFIVVQRGVDRPEDAAILARR 633


>gi|299068997|emb|CBJ40245.1| putative non ribosomal peptide synthetase protein [Ralstonia
           solanacearum CMR15]
          Length = 5954

 Score = 38.7 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 49/613 (7%), Positives = 128/613 (20%), Gaps = 39/613 (6%)

Query: 56  AIQELRSEFIEITGKKSTILPIIKS------------------------LGDVVEEKFTA 91
           A++ +R E       ++  LP +                          LGDV       
Sbjct: 249 ALERVRQEMQAHLSGQAAWLPAVVPYRDYVAQAKQRVSQAAHEAFFREMLGDVDTPTLPF 308

Query: 92  DLLLSYNLNPPVSNIQRLL---ELARLILIWRNK-LPDIIKDLYPESPLSLPISPANAIW 147
            L         +      L     ARL    R   +          + +   +S  + + 
Sbjct: 309 GLQDVQGDGGAIEEATLRLDAALSARLRQQARQAGVSAASLHHLAWARVVAVLSGRDDVV 368

Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
               L   +    + E+           +  +         +      +  L   +A   
Sbjct: 369 FGTVLLGRLQGGRSAERALGLFINTLPLRVAVHGQDVLAGTQAVHARLSALLGHEHAPLA 428

Query: 208 VGYQIALMRAEAEHLMKGTKGPIII--AGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265
           +  + + + A                 AGS  ++PA + +            +   +D  
Sbjct: 429 LAQRCSGVAAPQPLFSALLNYRHSAAPAGSAATVPAWSGIDVLEMKERTNYPLTVSVDDL 488

Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325
                 N  +    +         T        L          +  L     ++     
Sbjct: 489 GDGFELNVQSAAGIDPERIAGYLETALTSLTEALERGGRAPLHSLTVLPAAERQLILARW 548

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
             + +      S     +    + P       D   +        A  +A  LR +  + 
Sbjct: 549 NETAADYARQASLSALFEAQVVRAPEAIAIEQDARQLSYRALNALANRLAWRLREAGVKP 608

Query: 386 KKKSALIT-ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN---AIFKLN 441
               AL+      L       L    + + +    P +       L   +     + +  
Sbjct: 609 GDPVALLLDRSIELVASELAILKCGAVYVPLDRNAPQARQ---RFLLEDVEAGLLLSESA 665

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
                   ++         +   +   N   +                 L    +   + 
Sbjct: 666 LDAPALAGLRRIDVDDALSDSAGAVDANLPPVPGGEAAACVMYTSGSTGLPKGVVVPHRA 725

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQC--ITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
              +       + +  +      +       +    +          +       +    
Sbjct: 726 IGRLALNNGYAALDADDRVAFASNPAFDASTLDVWPSLLNGGRLVIIDQPTVLAPERFAE 785

Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
            L+   +         + +     +                +      ++        + 
Sbjct: 786 ALRRGQVSVLWMTAGQFHQYAPSLIGVFPQLRYLMTGGDVLDPAIIAMVLREGAPKHLLN 845

Query: 620 PKIEKSSTLFILG 632
                 +T+F   
Sbjct: 846 GYGPTETTVFATT 858


>gi|255087228|ref|XP_002505537.1| predicted protein [Micromonas sp. RCC299]
 gi|226520807|gb|ACO66795.1| predicted protein [Micromonas sp. RCC299]
          Length = 2156

 Score = 38.7 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 61/782 (7%), Positives = 169/782 (21%), Gaps = 34/782 (4%)

Query: 105  NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE- 163
            +++R L   ++   WR K              S+  + A  + + + L  +      E  
Sbjct: 713  SLRRRLAWGKVSTDWREK-RSSFARWVRFVDDSIAANEARLVAVTRILTRVFARAMREGF 771

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL--VELNASSPVGYQIALMRAEAEH 221
              W+              +    F       +   +             +   +    + 
Sbjct: 772  TAWKTRSEDARRARRNAIVAFKRFAARKEARFGREMTQAWRTHVMEGISRRRAVMTRLDA 831

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
              +                +  R             V+  L   +  +  + +  +    
Sbjct: 832  EDRTALNA-----FRLCARSELRRRRDRVRRWRTFAVVRRLRRELFASALSNVRRRWDES 886

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341
             ++    +     ++A          E V+   ++      R            +     
Sbjct: 887  VANARRAALGAWRAVAAKASRRRRNAERVEWAVDLCVRSATRLGPRRCWRDDYRSVVADV 946

Query: 342  TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401
                +  + +       V        R  A  +      +  +  ++ A         RR
Sbjct: 947  FAGWKLAVASAHTASKLVHQTATAMARHRAERVKRECVRAWRDWHRERAAEWDRVRQIRR 1006

Query: 402  VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461
             ++                 + T   +       A F+          +           
Sbjct: 1007 SEIA----------------AFTHRFNARLRARRAQFRAWRLETKTGALTRERRWRKVAR 1050

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
              +  A        +   +   D               + +             D+    
Sbjct: 1051 VTVGVAVRDGAARTMLFARVFRDWHRFSFASARERRDAEAHDLELARVCETRVCDRYRRE 1110

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEE 580
                      T          +      +S+         +        R+      +E 
Sbjct: 1111 PFRGWRRLTWTNAADRAVAAYANAVRRKLSNHATRMSHGRRREGARGTLRRWREAVEKER 1170

Query: 581  GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640
             ++L    ++ + T   + A   +       +        +   ++           + +
Sbjct: 1171 VRSLVHARAEAMHTRRAVHAPRADAFLAWRVVTKETAGFREKSYAAMNRRTRRRTRAVFH 1230

Query: 641  FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIY 699
               L    +        +     L+RV ++      A             A  +R     
Sbjct: 1231 AWHLRAVSIARAFVILRS-----LARVERARRGFLDASDSFRGWRGAVSRAASSRFSAAL 1285

Query: 700  TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
            T          +ASR LQR++ +        +    +          +          + 
Sbjct: 1286 TARAARRLARDLASRRLQRVVRVWYAIAGAGVAHPERRRAHDVAVAAHRKATSLKLTARA 1345

Query: 760  FPPLEAQPRTYSFSEIKQLI-NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818
            F          + + +         A  A    +      F       +RG  F   +  
Sbjct: 1346 FASWRVAVERGAVTAVTADATRVKCAAVAGWRARRVTREVFWALVRAAERGARFRAQLCA 1405

Query: 819  LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII-WRHLFHKISHSFLEHEEKIQSS 877
            + +  +  +        +++  +  E       ++ +  R                +++S
Sbjct: 1406 VARDSLIASGKTFLRRWREMAMASMEARRTHDALETLRARSERRDAWRRLATWRRAVRAS 1465

Query: 878  IE 879
              
Sbjct: 1466 RT 1467


>gi|224824168|ref|ZP_03697276.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
 gi|224603587|gb|EEG09762.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
          Length = 1516

 Score = 38.7 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 59/561 (10%), Positives = 127/561 (22%), Gaps = 42/561 (7%)

Query: 81   LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140
            +  +        +    +    +    + ++   +       L  +  D     PL    
Sbjct: 486  IQSLDRTALARSIAALEDTVDRLHGNLQRVD-REIDQCAARNLQPLTLDDEQIDPLRAAE 544

Query: 141  SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE--- 197
                   L++ LA + D +  EE+           +           L        +   
Sbjct: 545  QIGA---LSERLATLPDELTAEERHRPQFDDDAIIRLRAARRELGAALAYLPHALPDPAE 601

Query: 198  -------RLVELNASSPVGYQIA------------LMRAEAEHLMKGTKGPIIIAGSTGS 238
                        +    V  + A             +   A                  +
Sbjct: 602  LPTMETLHKAHQDLLQAVRLRQAIASGDVPTLANGALHQAAGLAEALRDLSARQVEIASA 661

Query: 239  IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298
                AR    +   P  A +L  L+     A                          L +
Sbjct: 662  AAPWARSCLDLLRLPACAAMLRLLEEWDSAAEAELARRPQLLQRPVMLPDGLEQDAELVE 721

Query: 299  LLDFLDIKREDVKRLG-NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
             +  L   R      G     E   R   +     P  TS          +     +   
Sbjct: 722  AIGQLAAGRSAFGLAGWFGKGEAKKRLAQVEVLGQPAQTSADWGQVAAHLQHRQALRRLL 781

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
                  A     E ++    L   ++  +++  LI       +     L R   ++  +A
Sbjct: 782  LRWNAIAAEFGAETLASTDPLL--VERARERCRLIRRMAEAVQLETEVLPRLRHSLPDAA 839

Query: 418  GIPLSTTLHSSILT----SLLNAIFKLNDFMAIATLVKHPLAKFGFPEK--YLSRAKNAL 471
                     + +L      L +   +  +  A        L++         L+   + L
Sbjct: 840  WPETLLEQPARLLEAQRILLHHLSCQRLEGAATLREQLLALSRHSGGPWAEQLAALADQL 899

Query: 472  ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531
                      S    DL        A       +   ++ +    +  A L    + Q  
Sbjct: 900  GTPEFDAGTLSETWQDL---CRQLAALHTLRPALDTVRTEVPRIAQSGAPLWARQLCQQP 956

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
                +                  K     LQ +      K       +  K L+  + ++
Sbjct: 957  AGAESDPLLPQDWAALWQ----AKRLRHALQQLDTRARLKTLAEERRQLEKQLAHSYQEL 1012

Query: 592  IETGSCIKANAIEWIDIITRL 612
            +   + +K       ++ + L
Sbjct: 1013 VAQRTWLKLADNATPEVRSAL 1033


>gi|157273413|gb|ABV27312.1| chromosome segregation protein SMC [Candidatus Chloracidobacterium
           thermophilum]
          Length = 1261

 Score = 38.7 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 63/744 (8%), Positives = 169/744 (22%), Gaps = 64/744 (8%)

Query: 153 ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212
             +I+           +   + E            L          +  L   +    + 
Sbjct: 206 RALIEEAA--GIGRFKVKRHQTELKLEAARQNLTRLNDLIGELERSIAHLKRQAQKSRRF 263

Query: 213 ALMRAEAEHLMKGTKGPIIIAGS-----TGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
             +R E     +     +I+A +       ++  T   ++         ++         
Sbjct: 264 VALREELRAAQRE---YLILARTRLQTQQATLAETQSRLAAEHERCQAEMLRISASLAAA 320

Query: 268 TAIWNTITEKSTNITSSNTTYS---THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                   +       +           +++   L   L    + +  L   + ++  R 
Sbjct: 321 REAARQAEDDLAAARQAAVAAERERDRLRHTQESLEAELRHLEDRLSELTKTAEQVAERQ 380

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA-----LIEADNEREEAISIAIALR 379
             ++++ +       +    L +    + +   +       L  A+   E+A    +   
Sbjct: 381 HWLTEAVVQAQGQTAQLAAELASIEVELSQASQNHQTAVAELQAAETASEQARQQHLLAL 440

Query: 380 MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439
              +  + +   +T       R +  L + G          L+    +    +L   + +
Sbjct: 441 TRAERLRHQVEQLTEAATRLARQQQSLEQEGARAAERYAQSLAEHTAAE--MALNEIVQQ 498

Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS--------- 490
           L    A  T+ +  L +     + L      +     R       + +L           
Sbjct: 499 LATVQAELTVAQSTLTELQSAYQTLVDRIAEVRRKYQRAEDRRQALEELDRQHAYYAPTV 558

Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550
            +L   A+     H     +      +    L+ + + + +  +V           N   
Sbjct: 559 RLLFDRASDIPGFHPLGTLADFLAVQEGYEALVEEVLGETLQAVVVPTVAAAQAAANWLT 618

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
           +         +  +                      +        + ++A      +   
Sbjct: 619 AAQAGRATLLVAGIHGGADGAGMTPKPVSPPTDFWDVLGVPEHLVAAVRAAFPHLAEAKL 678

Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
                  ++      + LFI    E  L         G  + +           +    +
Sbjct: 679 VPSLEAALEASACDPARLFITPAGEQVLGARRLTAGRGTAKSILRVKRELRALRAEAQSA 738

Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
              L T E+   Q A     A                     +  L+RL         + 
Sbjct: 739 AQTLATLEQKQTQTAAQRLAAQQR--------------CDALNAELRRLEAQHAAQAVEA 784

Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790
            ++R               ++                     ++                
Sbjct: 785 AQRRRDVERAHQHMNVVAAERSQLAAEADQLAPRRTTLEAELAKAITQREAAEQAMLVAQ 844

Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850
            +L  +    +                            E+       ++ H   E    
Sbjct: 845 QRLAQLRPAVEA---------------------AAHVLAELRTQAASKLERHRAAEGELR 883

Query: 851 HIDIIWRHLFHKISHSFLEHEEKI 874
            ++  WR +  +++H  LE     
Sbjct: 884 RLEREWREVEQRLAHLALEQAALR 907


>gi|164507704|emb|CAL64850.1| putative acarbose 4-alpha-glucanotransferase GacQ [Streptomyces
           glaucescens]
          Length = 699

 Score = 38.7 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 38/379 (10%), Positives = 80/379 (21%), Gaps = 9/379 (2%)

Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519
                  A  AL+  ALR           ++ +   +A +  +         L+E     
Sbjct: 252 AALIDREAVRALKHEALRRVYEVPLAPGRRAALEAFVAREGEDLTDFATWCALAEVHGGA 311

Query: 520 AVLLVDHILQCITP--LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
                + +    +P      +    +   +  ++  T   +   Q    D    +  +  
Sbjct: 312 WRSWPEGLRDPRSPRVAEARRELAGAVAFHRWLAWITDEQLAGAQRAAKDAGMNIGLVHD 371

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
              G       +  ++     + +     D   RL  G+       +   L   G     
Sbjct: 372 LAVGVAPEGADAWTLQHCLAGRMSVGAPPDDFNRL--GQDWGQPPWRPDALAAEGYRPLA 429

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
            L    L   G           +  ++                          A+    +
Sbjct: 430 GLLRAGLRHAGALRVDHVMGLFRLWWVPEGRPPSEGTYVRYDAEAMLGVLLLEAHRAGAV 489

Query: 698 I----YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
           +         R       A   L   +           +        W      T     
Sbjct: 490 VIGEDLGTVERGVREELAARGVLGTSVQRFEYLGGSEGRHGPLPPQQWRTNCLATLTTHD 549

Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLIND-PYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812
                 +   E          + +   +      A R   L  +      PD        
Sbjct: 550 LPTTAAWLSGEHVDLRARLGLLTRPEPEEKAQAAAERDGWLAELRRLDLLPDAGGEVVAL 609

Query: 813 HNIITELIKKRINKNTPEI 831
           H  +T      +    P+ 
Sbjct: 610 HRFLTRTPSTLLGVWLPDA 628


>gi|125924596|gb|AAY91420.2| nonribosomal peptide synthetase [Pseudomonas fluorescens Pf-5]
          Length = 4367

 Score = 38.7 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 87/764 (11%), Positives = 196/764 (25%), Gaps = 25/764 (3%)

Query: 61   RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120
            R + +E     +   P  ++L  + E +          +  P+    R L   +      
Sbjct: 2693 REQLLEGCNASTADYPRGQTLHGLFEARAAQAPDAVALVQGPLRLSYRQLN--QQANQLA 2750

Query: 121  NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180
             +L ++         L L   P     L   LA +             L A +       
Sbjct: 2751 RQLLELGVHPDDRVALCLQRGP---HLLRGMLAVLKAGAAYVPIDPS-LPAERIAYLLQD 2806

Query: 181  WLLAADFLKIASKYWTERLV--ELNASSPVGYQIALMRAEAEHLMKGTKGPIII-AGSTG 237
                A  ++ A++     L    ++       +  L      HL       +I  +GSTG
Sbjct: 2807 SAPLAVLVQSATRELPGSLAVVSIDLDGVAWQEAELGNPLLPHLTPAHLAYVIYTSGSTG 2866

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
                      ++ N  +       L     ++    +   +       T  S    +   
Sbjct: 2867 LPKGVMVEHQSLENLVHWHCASFDLGPGRHSSSVAGLGFDAMAWEVWPTLCSGATLHLPP 2926

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
              +   DI+           +  +  + V   +F         +T ++            
Sbjct: 2927 ADVGSQDIEALLHWWRAQPLDVSFLPTPVAEYAFSQGLGHPTLDTLLIGGDRLRQFAADP 2986

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417
              A+I      E  +  +     +         +  A   L   ++  + +        A
Sbjct: 2987 GFAVINNYGPTEATVVASSGRIEAGSALHIGRPVANARLYLLDELQRPVPQGVSGELYVA 3046

Query: 418  GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477
            G  ++    +    +    +         A + +         +  L       + V +R
Sbjct: 3047 GAGVARGYLNRPQMTAERFLNDPFSAEPEARMYRTGDLARWRADGNLDYLGRNDDQVKVR 3106

Query: 478  GNKNSYDIMD---LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534
            G +     ++   L    L           +  + +  +E  +  A  L DH+   +   
Sbjct: 3107 GMRIEPGEIEAALLTHPALKEALVLVREGRLLAYFTSRTEGVQAAAEDLRDHLQGRL--P 3164

Query: 535  VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE-EEGKTLSSLFSKIIE 593
                         + ++   KL    L     +       +  E E  + L+ ++S++++
Sbjct: 3165 DYMLPVAYVRLPAMPLTANGKLDRKALPPPGEEAWLNREFVAPEGEVEQALARIWSEVLQ 3224

Query: 594  TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653
              +  + +    +   + L      + +         +   +  L      +  G    V
Sbjct: 3225 VEAVGRHDHFFELGGHSLLAVSLIERMRQIGLDADVRVLFGQPTLAALAAAVGSGREVAV 3284

Query: 654  WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713
                   +          L     E      A         + +     L+E  +    S
Sbjct: 3285 PANRITADCPRITPDLLPLVELEQEAIDRVVASVPGGVANVQDIYPLAPLQEGILYHHLS 3344

Query: 714  R------WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA-- 765
                    LQ  L        D+     Q  ++    L         K+P      +A  
Sbjct: 3345 ARQGDPYLLQSQLAFASRQRLDDFAAALQRVVERHDILRTAVLWEGLKQPLQVVWRQAGV 3404

Query: 766  --QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807
              Q    + ++ + L        AR +          +     D
Sbjct: 3405 QVQEVQANPAQGEVLEQLQARFDARHLRLDLTRAPLMRLVYAQD 3448


>gi|162451276|ref|YP_001613643.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161161858|emb|CAN93163.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 1207

 Score = 38.7 bits (88), Expect = 5.9,   Method: Composition-based stats.
 Identities = 62/577 (10%), Positives = 141/577 (24%), Gaps = 15/577 (2%)

Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322
           D        +   +    +        +     +A L   LD         G        
Sbjct: 408 DALEAPPSAHVRDDGLAALARVIHRDLSMDSAGVALLRGALDSAVAAFVETGPRDAHGRA 467

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382
                  + +     ++   +  + +    ++    + + E D E   +  +   L ++ 
Sbjct: 468 LEAYALATEVVGALEEIELREHDDAQSTAARRAAVGL-VRELDAELLGSGLLKSLLLLNR 526

Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI-FKLN 441
             ++  + + + D    R  +  L   G     SA  PL  T+H   L +L++ I  +  
Sbjct: 527 RPSEDATGVASLDDLDERLARWLLRAEGTAARASASPPLHVTVHQRNLRALIHLIDGEST 586

Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
           DF +   L    LA++      L     A    +LR    +     L +LV +  A   +
Sbjct: 587 DFGSEPELKARVLARWTGAIGVLLDRLRAERGSSLRRAIAASVARGLDALVREGAADAAD 646

Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                H   R  + D    +            L  Y           + +   +      
Sbjct: 647 --IFLHAAMRGGDPDDLDVLGQASMHPDVAQLLRAYARFARGGRDGGARARAPES-DAAA 703

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
                 +      L   E  +      + +    + + A A +  +I+   +   +    
Sbjct: 704 SRRSTRQGGLDAELAEAERARVALERIAAVEALVTALPAGASQRTEIVRGALARLSRALG 763

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
              ++      T      + D   L  L E +          L+   +       A    
Sbjct: 764 AINAARALSALTGAGDG-DADASPLAALEEALTRLAQ-----LTAGARRRCGEHPASAPS 817

Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
           G      E       +                  L             ++       +  
Sbjct: 818 GAT----EPLRLAIEVALQEEGDAEPSVAAPIEALVSAARASIPSALADVVALVVPRVLL 873

Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                 +         +P P      RT     + + +          + + +       
Sbjct: 874 LPVRRQSAPSGVALPEQPLPAWLPSRRTLGGFYVHRQLGGGSLGTVFVVTRTEERHDPSA 933

Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838
           +          H     + +    +   E    +  +
Sbjct: 934 ERFALKVPEYDHTAARSVSEADFLRLFREEAGALLSL 970


>gi|170731184|ref|YP_001776617.1| chromosome segregation protein [Xylella fastidiosa M12]
 gi|167965977|gb|ACA12987.1| chromosome segregation protein [Xylella fastidiosa M12]
          Length = 1167

 Score = 38.7 bits (88), Expect = 6.0,   Method: Composition-based stats.
 Identities = 47/559 (8%), Positives = 115/559 (20%), Gaps = 28/559 (5%)

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA-----ISIAIA 377
           R   +       +     +    E     +    +DV  + A   R E        ++  
Sbjct: 257 RLQQLLAEQREAEMRIETSRVRREESAEALATAQADVYQVGATLARIEQQIQHQREMSQR 316

Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
           L  + DE +K+   +T            L               +      +L       
Sbjct: 317 LHKARDEAQKQLIDLTRHMGDDAATLAVLREAVE----------NNEPQLHVLREQSEFK 366

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                    A        +    E   +     +E   +          + +  +L    
Sbjct: 367 QDALRDAEAALTDWQQRWESHNRETSEASRAGEVERTRVDYLDRQALDAERRRDLLLAER 426

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              +   +     ++  + +     L     Q      T    ++      +     +  
Sbjct: 427 AGLDLDALAEAFEQIEVQYETQKAALDGLNDQLEQRKQTLADVQHQQRTAQTELADVRKH 486

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               +               +E+G  ++ L +  + + + +             L     
Sbjct: 487 AQTARGRLSSLETLQQAALGQEQGAAMTWLQAHGLSSAARVGERIRVESGWENALESALG 546

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA-KNPFLSRVMQSDLNLKT 676
              +         L    + L      ++      +    T+        V    L    
Sbjct: 547 HMIEGVLVDDPQTLVEALNSLNEGHIALVADTQTQIQVAPTSLAAKVQGPVAIRRLLTHL 606

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                  AA   +   G    + TR+            WL+              ++  Q
Sbjct: 607 HGAEDLVAARALQATLGEGDWVMTRNGECLGEG-----WLRVSRSGAAEQGALLRERDIQ 661

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                   L     +              +       + ++       +  R + +L   
Sbjct: 662 TLRAQIETLQEREAELE------HRLTHFRDHLLMAEQHREDAQRQLYIAHRGVSELAGQ 715

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN-LPPHIDII 855
                      RG + H              + +     +  +D    +   L      +
Sbjct: 716 RQAHHGKLEASRGRIQHIEAEIAQLLETLDTSRDQARTARATLDEAVTRMGDLESQRQAL 775

Query: 856 WRHLFHKISHSFLEHEEKI 874
                          E   
Sbjct: 776 HAERQQLNLTRDQAREAAR 794


>gi|115360444|ref|YP_777581.1| serine/threonine protein kinase [Burkholderia ambifaria AMMD]
 gi|115285772|gb|ABI91247.1| serine/threonine protein kinase [Burkholderia ambifaria AMMD]
          Length = 2104

 Score = 38.7 bits (88), Expect = 6.0,   Method: Composition-based stats.
 Identities = 68/664 (10%), Positives = 171/664 (25%), Gaps = 28/664 (4%)

Query: 55   RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELAR 114
            R    +         ++   L  I     +       +L+      PP+S  Q    LA 
Sbjct: 1079 RMAARI-EALEGELDRQHAALHRIDESTGLSYRALLGELIRLEAGTPPISVPQLRTRLAT 1137

Query: 115  LILIWRNKLPDIIKDLYPESPLSLPIS--PANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            L +     L +    L      S       A     A + A + +        + +   L
Sbjct: 1138 LDISTLTTLEEHCAPLARYWLPSKFEGSALAQLKPFATDTATL-EAFNAIFADFREAERL 1196

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232
            + E                 + W +       +     +  L +  +             
Sbjct: 1197 RIETLTAHPARFDVDDPAPYRAWLDANASRLVALDDTQRKRLAQWLSLFRPADHADAQGH 1256

Query: 233  AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
               T        L++   +  +   VL      +P      +  ++T  T + +      
Sbjct: 1257 RYYTALGGLHRDLLAVETSGFDA--VLSAAVARLPDPELRKLEAQATLATRAPSLMRRLN 1314

Query: 293  QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK-IPN 351
              +  +    +           + +      +  + K++ P   +    +  L  + +  
Sbjct: 1315 PITYLRRGRLMKFVTHCGAPATDETLRKLLAAARLEKAWRPMRDTLNTISRALNLETVEP 1374

Query: 352  IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK-----LEL 406
                    A +    + EE   +A  L ++   ++  SA++T DR   +++        +
Sbjct: 1375 TCGRALADACLTRLRQFEEIRELAQHLAIAPRGDEFDSAVMTGDRAPVKQLLDGFETAFV 1434

Query: 407  TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH---PLAKFGFPEKY 463
                    + A  PL   L + + T+   AI    +  A    +      LA +      
Sbjct: 1435 RHNARQHSLRALSPLDEWLSAELFTACRQAIADNINHQAPLNRIGDALPTLAAYQQFRTR 1494

Query: 464  LSRAKNALELVALRGNKNSYDIMDL-KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
                      V      +   +M +    + D +    N      W+ R+ +++ EL + 
Sbjct: 1495 ARHLTAEALDVFATVRDHEDSLMRVPPEHLDDAVRRMINREARLGWKRRMEQDNPELLLD 1554

Query: 523  L------VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
                   +D +      +            +       +      +       R    + 
Sbjct: 1555 HSETTAKIDALAAADEEMRRLNREMLRNGIDHGRLGSARDWEDVTRLTGRRSRRLREFIE 1614

Query: 577  FEEEGKTLSSLFSKIIE---TGSCIKANAIEWIDIITRLIDGETVKPKIE---KSSTLFI 630
               E   ++     ++        +   +  +  ++        V+  I    + +   +
Sbjct: 1615 LGTELGLMALRPVWLMNPDVASRVLPLKSGLFDSVVYDEASQMPVEYAIPTLFRGNLSIV 1674

Query: 631  LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690
             G  +              +E         +   +   +         + I       ++
Sbjct: 1675 SGDEKQMPPTAFFSSRTDSDETEIFDGEQPDEAATEDERERFEDTWNRREIKDCPDLLQL 1734

Query: 691  ANGT 694
            A   
Sbjct: 1735 ARSA 1738


>gi|167588959|ref|ZP_02381347.1| amino acid adenylation domain [Burkholderia ubonensis Bu]
          Length = 1647

 Score = 38.4 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 61/720 (8%), Positives = 145/720 (20%), Gaps = 45/720 (6%)

Query: 173  KNEKYGMWWLLAADF-LKIASKYWTERLVELNASSPVGYQIALMRAEA-------EHLMK 224
                    W       ++     +       +          L  A+             
Sbjct: 547  GIGDEARHWQALLSQHVEPMPVDYPAAGAANHVGDTASVSFELDEADTTVLLRRLPRAYD 606

Query: 225  GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                 +++     +         T  +  +    +      +   +    +     +   
Sbjct: 607  TRINDVLLVALAQACGMVTGNARTRIDLESHGRHVSDAPLDLTRTVGWFTSIYPVVLDVD 666

Query: 285  NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344
                      +  + L  +         L  +S +   R  + +        +     D 
Sbjct: 667  AVQAPEDALRAARQQLRGIPADGLGYSLLRYLSPDDAVRDSLAALPNADILFNYHGQLDT 726

Query: 345  LENKIPNIQKCFSDV-ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
            +  +         D+ +L    + R     I  A+           +     R     + 
Sbjct: 727  VLQRSDGWSPAAEDLGSLRSERSLRTHLFEIVAAVSNGRLHVDWSYSERIHQRQTVENLA 786

Query: 404  LELTRFGINIDIS----------AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
                   ++   S             PLS+     +  SL +           A   +  
Sbjct: 787  AHFKDRLLDFAASVPDTGWDNVEDSYPLSSLQQGILFHSLYDL-------DPAAYFQQFS 839

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                G  +    R   A  L      +  +   D    V   +           W+SR +
Sbjct: 840  FVVNGPLQVPALRQAWANALERHAMLRTGFAWTDRDHPVQTVLHAVDLPWTFVDWRSRDA 899

Query: 514  EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573
                +     +            +   K        I +       C     +       
Sbjct: 900  SRRAQDFDAFL-----ADDRRRGFDLQKAPLFRCTLIQEAEDRHRFCWSAHHIILDGWST 954

Query: 574  NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633
             +  +E      S+    +   +       ++ID + R    E       + +       
Sbjct: 955  AILMKEVFDDYLSIARTGVPALASPAPGYRQYIDWLARHPRSEDEAWWRAELAGFRAATP 1014

Query: 634  LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693
                 +  + +  G  +     K   +   L   + + L                 +   
Sbjct: 1015 -----IVAEPVRQGAGDAARQDKRREQRFLLDEALTARLQALMRTH-----RLTLNVLIR 1064

Query: 694  TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753
                +  R     +          R  +L G +    L      +          T+   
Sbjct: 1065 AVWALVLRRYARTDDVVFGVTVSGRPPLLDGVESIVGLFINTLPFRVRIAPERPFTEWLA 1124

Query: 754  YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813
                             S  +I+     P        L +         PD    G    
Sbjct: 1125 AVHTAQTAMEPHSYS--SLVDIQSWSELPARDSLFDSLLVFENFPVAAAPDLGPDGIDIV 1182

Query: 814  NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873
            +             T   +  +        +     P +         ++   F E   +
Sbjct: 1183 DTRAFAESNYPLTLTVHPDTRL--AFRISHDAHRFAPDVVRHMLGAIRELLERFAEDPAQ 1240


>gi|117168626|gb|ABK32290.1| JerD [Sorangium cellulosum]
          Length = 1880

 Score = 38.4 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 50/564 (8%), Positives = 120/564 (21%), Gaps = 32/564 (5%)

Query: 198  RLVELNASSPVGYQIALMRAEAEHLMK---GTKGPIIIAGSTGSIPATARLMSTVANHPN 254
             L         G +   +   A    +             S G   A    +       +
Sbjct: 893  ALDWPRLFDATGARRVELPTYAFQRQRYWIDAPRRAAGLESVGLTAADHPWLGAAVRLAD 952

Query: 255  GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
              + +           W      +       T +      +   +      +      L 
Sbjct: 953  RDVYVLSGRLSTVDHPWILDHVVTGTALMPGTGFVELAWATAQAVNAAAIAELTLTTPLV 1012

Query: 315  NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374
              +       + + ++      +   ++           +  + V   EA    +EA  +
Sbjct: 1013 LPARGAVQLQVTVDEADADGRRAFAIHSRPHGPVDLEWTQHATGVLSAEAPAGADEAAGL 1072

Query: 375  AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
            +             +  +  D    +  +                          L  L 
Sbjct: 1073 SEW-------PPPGAEAVALDGGYEQLSEH---------------GYGHGPAFQGLRGLW 1110

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
             A   L   +A+   V      FG        A  +L  ++         ++   +    
Sbjct: 1111 RADQTLYAHVALPDAVAGTEQGFGLHPALFDAALQSLARLSREEAAAGDPVLVPFAWTDV 1170

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
             +                +E        L+       T   T +    S     S +   
Sbjct: 1171 ALYAAGATELRARIALEQAEGGAPAVASLLLADAHGRTVATTGRVRGASAAQTRSAASRA 1230

Query: 555  KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            +            E            G   +   +  +   + +        +++  L D
Sbjct: 1231 EPMYRVAWTDVALEAAAWAPEEHVVLGGDGALASALGVRAAAGLP-------ELLEALAD 1283

Query: 615  GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
            G     ++    T    G + + +       L  +   +          L     +    
Sbjct: 1284 GAAAPRRLVVDLTAGDAGAVVAAVHAAARGALALVQGWLAAPQLTATELLVVTRCAVATG 1343

Query: 675  KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
                      A  + +   TR     R++R  ++             L      +   +R
Sbjct: 1344 PDEGVDALGPAAVWGLLRATRAEHPDRAVRVLDLGREPLDGALLRRALAAVAEPELSLRR 1403

Query: 735  GQCYLDWTRKLDYTTKQPHYKRPK 758
            G+      R+            P+
Sbjct: 1404 GEARAPRLREAKPAAAPATRLDPE 1427


>gi|86360217|ref|YP_472106.1| sugar ABC transporter, permease protein [Rhizobium etli CFN 42]
 gi|86284319|gb|ABC93379.1| probable sugar ABC transporter, permease protein [Rhizobium etli
           CFN 42]
          Length = 749

 Score = 38.4 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/193 (6%), Positives = 36/193 (18%), Gaps = 4/193 (2%)

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
             +    ++    + HPL        +  R       +     ++               
Sbjct: 134 QSRPLRPLSCRRGLSHPLCDALPGHPFDRRLLEIHAELVPARTRHHGPGAAHAEWRHHAG 193

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN-STCGNLSISDWTK 555
                     H +       + +         +        +         +   +    
Sbjct: 194 DRSARQPRRGHRRDDDGRGARRVGRHSRGRRRRPCGRRRHRRHRHLSEASCDHRHARRLL 253

Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC---IKANAIEWIDIITRL 612
               C  +           L  +  G+      S           +  +A     +  R 
Sbjct: 254 HHQRCRTHSAAAAGWHRSRLAVDGAGRPHGRCLSDARGDPGALESLPGDAARSRHLCGRR 313

Query: 613 IDGETVKPKIEKS 625
             G  V  +  + 
Sbjct: 314 QPGRGVPFRRSRR 326


>gi|317047571|ref|YP_004115219.1| chromosome segregation and condensation protein MukB
            domain-containing protein [Pantoea sp. At-9b]
 gi|316949188|gb|ADU68663.1| chromosome segregation and condensation protein MukB domain protein
            [Pantoea sp. At-9b]
          Length = 1488

 Score = 38.4 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 82/791 (10%), Positives = 190/791 (24%), Gaps = 80/791 (10%)

Query: 109  LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168
             L L  L    R +                         L + L   I+ + +      +
Sbjct: 519  RLRLNELEQRLREQNEAERLLAEFCKRQGQQYDADALEGLQRELEAQIEQLSSSVADAGE 578

Query: 169  LHALKNEKY-------------GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215
               L  ++                 WL A + L   S+   ++L      +    Q+   
Sbjct: 579  RRMLMRQELEQLRERITMLTARAPHWLAAQEILTQLSEQTGQQLTSSQQITEFMQQLLER 638

Query: 216  RAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270
              E      E   +  +    I   +    A    ++ +A    G +    L        
Sbjct: 639  ERETTVERDEVAARKREVEKQIERLSQPGGAEDARLTQLAERFGGVL----LSEIYDDVT 694

Query: 271  WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330
             +     S     S           + +LL+ L+   ED+  +             + + 
Sbjct: 695  LDDAPYFSALYGPSRHAIVVPDLSLVRELLNGLEDCPEDLYLIEGDPQSFDDSVFGVDEL 754

Query: 331  FLP--PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
                    ++ +       K+P   +   +  L   +NER++                ++
Sbjct: 755  ENAVVVKVAERQWRYSRYPKVPLFGRAARENQLELLNNERDQLA--------------ER 800

Query: 389  SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448
             A ++ D    +R+    +RF             + L  +             D  A+  
Sbjct: 801  YATLSFDVQKTQRLHQSFSRFI-----------GSHLAVAF----------DEDPEALMR 839

Query: 449  LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508
             +     +                    +  +       +  L                 
Sbjct: 840  QLNSRRGELE------RALSQHENDNQQQRMQYEQAKEGVAQLNRLLPRVTLLLDDTLAD 893

Query: 509  QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
            +     E  E A      + Q    L   +        +    D  +      Q V    
Sbjct: 894  RCEEIRERVEEAQEAARFLHQHSNKLSKLEPLLPVLQSDPQQHDQLERDYQQAQQVQR-- 951

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                      ++   L+ +  +         A  +     +   +     + + E+S   
Sbjct: 952  -------EARQQAFALTEVVQRRAHFSYEDSAGMLTGNSDLNEKLRQRLEQAEGERSRAR 1004

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
              L   +++L  +  ++    +     ++  K               +AE+       + 
Sbjct: 1005 ERLREHQAQLTQYSQVLASLKSSYDAKRDMLKELQQEMQDIGVHADASAEERARARRDEL 1064

Query: 689  EMAN---GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745
              A      R     + L        + +   R L        + +      +    R +
Sbjct: 1065 YTALSHNRARRNQLEKQLTFCEAEMDSLQKKLRKLERDYHQVREQVATAKAGWCAVLRLV 1124

Query: 746  DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
                 +    R +       + R+ S   +  L     A        L      K+   +
Sbjct: 1125 KENGVERRLHRRELAYLGGDELRSMSDKALGAL-RLAVADNEHLRDVLRMSEDPKRPERK 1183

Query: 806  TDRGTLFHNIITELIKK--RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
                   +  + E I++      +  E    M+  ++   E+         I       I
Sbjct: 1184 IQFFIAVYQHLRERIRQDIIRTDDPVEAIEQMEIELNRLTEELTAREQTLAISSRSVANI 1243

Query: 864  SHSFLEHEEKI 874
                ++ E+  
Sbjct: 1244 IRKTIQREQNR 1254


>gi|162449858|ref|YP_001612225.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161160440|emb|CAN91745.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 1245

 Score = 38.4 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 40/450 (8%), Positives = 110/450 (24%), Gaps = 8/450 (1%)

Query: 170  HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229
             AL   +   W+      L  A     +  V+         ++  +      L +     
Sbjct: 794  AALHLTQRRPWFQRLHRALLDALAEGAQGRVDAGLLGAGYERLGAVAEARRWLGRAMAEA 853

Query: 230  IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289
                    +     RL +  A+    A +       +          +       +   +
Sbjct: 854  AAAGLFEEAAAFADRLAALAADPEARAGLEIDAVRALIQGRKLEEASRRLARLPEHAVVA 913

Query: 290  THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349
                  + + +  L++ R   +   +    +     +   +              +    
Sbjct: 914  RGGPLDVRRRIHRLEVARGLSEAGADDPGLLADADALGEAALR---CEARMALAGVAAGD 970

Query: 350  PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409
              ++     V L        E  +  +   ++  +N++   L+  D   A  +   L   
Sbjct: 971  RAMELAGEAVELAAGAGPAAELAARVLRCELNYAQNRRDHELLERDLQRALAIAAPLASA 1030

Query: 410  GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA-----IATLVKHPLAKFGFPEKYL 464
               + I   + +          ++      + +           L+   L+ F   E   
Sbjct: 1031 WHRVHIGGDLAVLEAELGRTGVAIDRLRRLVAEAEQQGMRGQLRLLLQNLSAFLMREGRA 1090

Query: 465  SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524
            + A       A    ++    +   +L L   A  +        +S    E  + A    
Sbjct: 1091 AEAAEVARRTAELAAQDGDPALRAAALSLLSAALTRAGRPAAALESADQAEQLQRARGDR 1150

Query: 525  DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584
             H L  +     +   +          +  ++      +      R    L   + G+  
Sbjct: 1151 YHALTLLRRAEIHWELERVGDALEDAVEARRVAEEHGDDSIAAGARLWAALRRAQLGRLE 1210

Query: 585  SSLFSKIIETGSCIKANAIEWIDIITRLID 614
            +     + E  +           ++  +  
Sbjct: 1211 AERRRLVGEVRASSPRVIGLLRGLLPEMAA 1240


>gi|256377952|ref|YP_003101612.1| amino acid adenylation domain protein [Actinosynnema mirum DSM 43827]
 gi|255922255|gb|ACU37766.1| amino acid adenylation domain protein [Actinosynnema mirum DSM 43827]
          Length = 2827

 Score = 38.4 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 52/569 (9%), Positives = 126/569 (22%), Gaps = 44/569 (7%)

Query: 59   ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--VSNIQRLLELARLI 116
             LR  F         + P +   GD+ +   +           P   +        +   
Sbjct: 519  ALRLRFAIRERWGVDLAPSVVHRGDLADLAASISAAGRAAYPEPGAPTTATTAPATSEQQ 578

Query: 117  LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI----IETEEKKWEDLHAL 172
             +W  +  +     Y            +   L +++  +++         E   + L  +
Sbjct: 579  RLWLLQRRNPASTAYHVPLAFRVAGDPDLAALRRDVRGLVERHPALRTAFEAAPDGLRQV 638

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232
            +   Y  W     DF                       ++       +         I +
Sbjct: 639  ERAAYDPWTEPGGDFFTA-------------PFDLASGRLLRAAWRPDGTFLLCLHHIAV 685

Query: 233  AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
             G +        L   ++            D     A W         +           
Sbjct: 686  DGWS-----LNVLFRELSGARPRPGARTPFDFADWQARWFASPGYRAQLAERADDAEPLG 740

Query: 293  QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
            + SLA  L    + RE V R          + ++   +      +      I        
Sbjct: 741  EASLAGRLRTTRVDRERVDRWAAELGLTRFQLLLGVFARSLCAVTGRTRPRIATPVANRP 800

Query: 353  QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
             + F D   + A+  R                       +  + +LA +++      G  
Sbjct: 801  VREFEDGVGMFANTVRLPLS-------------------VDPEEDLAAQLRRLGDAAGAA 841

Query: 413  IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
            +D             +    L        + + +      PL       K          
Sbjct: 842  LDHQDVAFADLDPAYAAFDYLFVLENTDFEALRLPGCSVSPLWIEAAEAKCALTLSVVER 901

Query: 473  LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP-HWQSRLSEEDKELAVLLVDHILQCI 531
                       +    ++                              A L+ + + +  
Sbjct: 902  PDGFDCLWEYGEGHFTEAEATALGEVFDRALRGDARMPDHHDHGRGAEADLVWETVAEGF 961

Query: 532  TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
               V    +  +  G  +++              L +      L+F    + + +L +  
Sbjct: 962  ARQVALTPDAPALTGGTTLTYAELDAHAARLAAALPDDATDVALYFRPSAEHVVALLALA 1021

Query: 592  IETGSCIKANAIEWIDIITRLIDGETVKP 620
                + +  +      ++  ++D      
Sbjct: 1022 RLNITAVPLDPAYPPALLREMLDQARPSC 1050


>gi|226940129|ref|YP_002795202.1| RecB [Laribacter hongkongensis HLHK9]
 gi|226715055|gb|ACO74193.1| RecB [Laribacter hongkongensis HLHK9]
          Length = 1216

 Score = 38.4 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 75/868 (8%), Positives = 180/868 (20%), Gaps = 48/868 (5%)

Query: 84   VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
             +++        S +L       +           WR     I+  L        P    
Sbjct: 269  WLDDLADWLARDSDDLPLAGKPFE--------TARWRLTPAGILDALKAGMSFDPPEPFF 320

Query: 144  NAIWLAK-NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL--KIASKYWTERLV 200
                L +  LAD              + A    +      +  D +   +A     +   
Sbjct: 321  AVERLLQPALADTSLRAALLTHATRSIAAALAAEKSRRAEIGFDDMIRGLAQALAPDSPN 380

Query: 201  ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260
                +  +     +   +        +  I       + P     +  + +         
Sbjct: 381  RERLAQALRQAYPVALIDEFQDTDPAQYAIFRTLYADAGPEARLGLLMIGDPKQAIYAFR 440

Query: 261  GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
            G D     A  +    +      +N   +T     + +L           + +    +  
Sbjct: 441  GADIFTYLAARHDTRPEQRYTLDTNWRSTTAMVGVVNQLFCGSPEAGTVSETVFGRPDIP 500

Query: 321  YGRSMVISKSFLP-------PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373
            +       +S          P  +     +         +        I       EA  
Sbjct: 501  FQAVRAAGRSERLVQGGMPVPPLTLAWRQEAGNKDDYRQEFARRAAEAITTLLNDSEAGL 560

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRF-GINIDISAGIPLSTTLHSSILTS 432
            +A           +  A++  D   A  ++  L      ++ +S    +  +  +  L  
Sbjct: 561  LADDG-GFEPLAPRDIAVLVRDWQEAAAIRRALDLCSVRSVYLSDKDSVFASQEAQDLVR 619

Query: 433  LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
             L+A+    D   +   +        +                    ++       + ++
Sbjct: 620  WLDAVLYAEDNARLRLALATATLGLDYAGLDRLFNDEREWERTSERFRSYRQTWRQQGVL 679

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
               +A   +        +R  E  +     L+    +                    +++
Sbjct: 680  PMLLALLHDYRLPARLLARRDEGGERQLTNLLHLAERLQADAAGIDGEVGVLRHLERLTE 739

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK--ANAIEWIDIIT 610
                    +  +  ++ R       + +G     +F   +  G  +    N I W D   
Sbjct: 740  QPDAAQESVLRLESEDARVRVVTLHKSKGLEYPLVFLPFLAGGRALPDGRNGIFWHDGDG 799

Query: 611  RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
            RL    T +     ++        + RLL                  +     L+     
Sbjct: 800  RLHVDLTGQDADGLAAMQRESAQEDMRLLYVALTRARHALWIGLSPLSGTGDLLAGSAIG 859

Query: 671  DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
             L    ++              G+   +      +       S     L           
Sbjct: 860  RLLQLDSDPGRLAGRLHALAQAGSDIRLDDTPPADPPPRYCDSTPAPVLFPARRLTRRIA 919

Query: 731  LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR-----TYSFSEIKQLINDPYAV 785
             + R   Y                         +           +   +      P A 
Sbjct: 920  RRWRIASYSALLTGPAQAGPPAAEDSAAANRIDDTAMPDSPVLPIAGRTLAGFWRGPQAG 979

Query: 786  YARRILKLDFIPH---FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ----- 837
                 L             +     R  L        +   I+     +  ++ +     
Sbjct: 980  IFLHGLFEWAAQQGFGRTCELAAERRDLLARRCQRRELAGWIDFFDGWLPWVLTRPLPLN 1039

Query: 838  -IIDSHFEKENLPPHIDIIWR----HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892
                                           +                  +    +    
Sbjct: 1040 DASPVTLAALPPRSARAETEFWLGNPQLATTALDAAVSVAVWPGHARPALLPQSLQG--- 1096

Query: 893  SIGIHLTGFADRIDLLKSGFVDITDYKT 920
                   GF D +   + G   + DYK+
Sbjct: 1097 ----LFKGFIDLVFEHE-GRFYVLDYKS 1119


>gi|262197000|ref|YP_003268209.1| hypotheticalprotein [Haliangium ochraceum DSM 14365]
 gi|262080347|gb|ACY16316.1| TPR repeat-containing protein [Haliangium ochraceum DSM 14365]
          Length = 3936

 Score = 38.4 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 67/782 (8%), Positives = 175/782 (22%), Gaps = 43/782 (5%)

Query: 37   DPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLS 96
                    A++  Y P     +       +          +++ L +  +       L  
Sbjct: 2919 RDDAIERYAALLAYAPGHGGTRAALDALAQREETAERASAVLERLYEDEQNYDALAALYE 2978

Query: 97   YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156
              L+ P  N +R  EL R++     +    +   +    L       +    ++ + D +
Sbjct: 2979 QRLSMPTPNPERRFELYRMLAQVCEERLGDLDRAFEVWAL-----ALSEYSSSEEVQDHL 3033

Query: 157  DIIETEEKKWEDLHALKNEKYGMWWLLAA-------------DFLKIASKYWTERLVELN 203
            + +      WEDL AL  ++                      D L        +    L+
Sbjct: 3034 ERLAASRGAWEDLVALLEQRLAELLDAELEYAYALKLASLYEDALGDLEGAAEKYRRALD 3093

Query: 204  ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
             ++     +A +        +  +   ++A    +          +    +   V     
Sbjct: 3094 VAADEREPLAALDRIYGRSERYEELAEVLAREAEATLDEGEQCQFLFRLGDLREVRLRDL 3153

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL--LDFLDIKREDVKRLGNVSNEMY 321
                 A  + +     +  +              +   +  L+   E       +++ + 
Sbjct: 3154 PGAVNAYRDVLERIPQHSAARGALERLLHSAESVRADIIRILEPLYEQEGDFARLADLLA 3213

Query: 322  GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381
             +       F                    ++   +    +  D + ++A++    L  +
Sbjct: 3214 AKLGTTGVHFERAQIYSRIAELAENQLGDPVRALDAAGGWLAEDPQSQQALAELARLAEA 3273

Query: 382  LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441
            +D   + +A ++                    D      L   + +  L  L +      
Sbjct: 3274 VDRFGEMAARLSGIVE-------------SADDPDIQRALLFQMGTIELERLRDDAAAEA 3320

Query: 442  DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501
             F     +   P              +   E    R      D++   + +      ++ 
Sbjct: 3321 SFKRCLEI--SPEFTEALDALQRIYRERGGEGDRARLA----DVLGRMAEITYEPENKRR 3374

Query: 502  NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561
                         E         + +                            +     
Sbjct: 3375 YLVEVAELRGELGELDAAVEAWREVLALDEGDRDALARLAIIHEQRGDWYALIDILGQSA 3434

Query: 562  QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
            +     +  +       +            +E    +   A +  D +T L   E +  +
Sbjct: 3435 RYAANSDEERRFRSRIAQLQSDTLEDLDAAVEAWQSVLDVAPDAEDALTAL---EGIHTR 3491

Query: 622  IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681
             E    +         LL+     +  L+         ++     ++     L   + ++
Sbjct: 3492 REDWGAVQDTMARRLDLLDAPADRVAVLHRLADLAADKRDANEDAIVYLFQALDLDDTHL 3551

Query: 682  GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741
                   +   G     +           + +R               +   R     + 
Sbjct: 3552 P-TYEKLDELLGKAERWHDLVDLLERAAGVYARLAGMGAAGQPQRKEIDCLARAADIWEG 3610

Query: 742  TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801
                     +   K     P         S         D  A    R L L        
Sbjct: 3611 PLANPDAAAEILEKILAREPAYVPALTRLSKIYESAGDWDRCAEVLDRALALGPTGRDAA 3670

Query: 802  DP 803
            + 
Sbjct: 3671 EL 3672


>gi|31044145|gb|AAP42857.1| NanA3 [Streptomyces nanchangensis]
          Length = 4032

 Score = 38.4 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 47/503 (9%), Positives = 106/503 (21%), Gaps = 23/503 (4%)

Query: 313  LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE----- 367
            L + +  +  R  ++           +   +     +   +     +A + A        
Sbjct: 690  LPDAARLVAARGRLMQALPEGGAMVALEAAEEEVALLLAGRADQVALAAVNAPTSVVVSG 749

Query: 368  -REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
              E    IA  +R      ++              +  E  +   ++  S       +  
Sbjct: 750  DEEAVEEIARTIRERGHRTRRLRVGHAFHSPRIDPMLEEFRQVAASLTYSQPRIAVVSNV 809

Query: 427  SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486
            +  L           D        + P+                      R  +   D +
Sbjct: 810  TGALAGAEQLC----DPDYWVRHARQPVRFRDG-------IAALRAEGVTRFLELGPDAV 858

Query: 487  DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546
                      +                      A +L   + +      T  T       
Sbjct: 859  LTAMARDCLTSEAAPEVAAGESAQDAGTASGPSAPVLATVLRKGRDEPRTLLTALAQLHV 918

Query: 547  NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
            +    D++       Q   L  +R     ++ +  +  + + +  +E        A    
Sbjct: 919  DGESVDFSASFPATTQATDLPTYRFDRRRYWRDAPQAEADVRAAGLEASDHPLLRAALEP 978

Query: 607  DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666
                 L+ G          +   I+  +      F  L L         +    +     
Sbjct: 979  ADGGLLLTGRLSLRGQPWLADHAIVDAVPLPGTLFVELAL------QAGERVGCDLIDDL 1032

Query: 667  VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726
             +++ L L        Q A     A G R +               S     +    G  
Sbjct: 1033 TLEAPLLLPPVGAVDLQVAVGATDAAGRRAVTVYSRPSGGGSEGWESSADPGVADEPGDG 1092

Query: 727  FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
             +   ++     L               + P            Y     +     P    
Sbjct: 1093 PYGPWRRHATATLGTAPTGVPEPAASPAQWPPAGAEAIDVAGLYERLAAEGYRYGPAFTG 1152

Query: 787  ARRILKLDFIPHFKKDPDRTDRG 809
             R   ++      +       RG
Sbjct: 1153 LRTAWRVGEEMFAEVGLAPGQRG 1175


>gi|302539529|ref|ZP_07291871.1| polyketide synthase type I [Streptomyces sp. C]
 gi|302448424|gb|EFL20240.1| polyketide synthase type I [Streptomyces sp. C]
          Length = 2834

 Score = 38.4 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 68/732 (9%), Positives = 139/732 (18%), Gaps = 40/732 (5%)

Query: 54   KRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELA 113
            +   + LR    +                        A     +     V+   R   L+
Sbjct: 1796 RGQARRLRDHVADRPAFDPA-----------AVGHGLATARALFPHRAVVTGADRAEYLS 1844

Query: 114  RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL-------ADIIDIIETEEKKW 166
             L  + R +    +      S        A    + + L       A   D +       
Sbjct: 1845 ALDAVARGEADTDLVQAPATSAFLFSGQGAQRPGMGRELYDAQPVFAAAFDEVCGHFDFP 1904

Query: 167  EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS-SPVGYQI--ALMRAEAEHLM 223
                                 L          L         V       +  A    + 
Sbjct: 1905 LKEIVFGGGDEVHHTEYTQPALFAIEVALYRLLESYGVRPDFVAGHSIGEIAAAHVAGVF 1964

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                   ++      + A     + V+       V P L   +  A  N       +   
Sbjct: 1965 SLADAAALVRARGALMGALPEGGAMVSLQATEQEVRPLLSADVDIAAVNGPQSVVISGAE 2024

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                          +    L +       L     + +           P          
Sbjct: 2025 DAVLAVAAQLADQGRKTKRLTVSHAFHSPLMEPMLQAFREVAGSLAYSDPVIPVVCALDG 2084

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEA-----------ISIAIALRMSLDENKKKSALI 392
             + +    ++     V   +A    E A             +A   +  L+E      L+
Sbjct: 2085 DMTSPDYWVRHVREAVRFHDAMRRLEAAGVDTYLELGPDAVLAAMGQACLEEPAALLPLL 2144

Query: 393  TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
              DR+  R +   L R            L     ++       A      +  IA     
Sbjct: 2145 RRDRSETRTLLAALGRAHARGVALDLPALFAGAPAAPADLPTYAFQHDRYWPRIAEQPAA 2204

Query: 453  PLAKFGFPEKYLSR--AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
            P                                    + S     ++       V    S
Sbjct: 2205 PSWLVPRRGADALDDLLYRVTWQPVDAAQPAVSGRWLVVSAAAGELSAPGGVELVAGGLS 2264

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
            R    +    V  VD ++  +    +    +      +    W                 
Sbjct: 2265 RGELAEALSGVGAVDGVVSLLDVAGSLSLVQALGDAGIGARLWCVTRGAVSTGAADRVVD 2324

Query: 571  KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET------VKPKIEK 624
             +    +            +                  +  ++ G T      V+ +   
Sbjct: 2325 PVRAQVWGLGRVAALEFGERWGGLVDVPPVLDERATARLWAVLSGGTGEDQLAVRAEGVF 2384

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
            +  L            +       +  G          +L+     +L L +        
Sbjct: 2385 ARRLVRAPFAPVVGEGWRPEGPVLVTGGTGALGARVARWLASAGAKELVLTSRRGLDAPG 2444

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
            A +         +    +  +       ++ L    V         L       L   R 
Sbjct: 2445 AAELVAELAEAGVSAVVASCDVADRDAVAKLLVEHPVSAVFHAAGVLDDGVLDALTPDRL 2504

Query: 745  LDYTTKQPHYKR 756
                  +    R
Sbjct: 2505 AAVLGPKADAAR 2516


>gi|289208001|ref|YP_003460067.1| transcriptional activator [Thioalkalivibrio sp. K90mix]
 gi|288943632|gb|ADC71331.1| transcriptional activator domain protein [Thioalkalivibrio sp.
           K90mix]
          Length = 1133

 Score = 38.4 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 72/745 (9%), Positives = 168/745 (22%), Gaps = 62/745 (8%)

Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
               R  EL RL  IWR  L             +              LA  +D      
Sbjct: 308 PLAGRTEELERLHQIWRQTLKHHKPHFVLIQGEAGLGKSR--------LARHLDE-RIRG 358

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
           +          E            L    + +   L   + ++    ++A +   A  L 
Sbjct: 359 QARSRFLLKCREDRSRH------LLAPVRQAFATWLGLGSMNASRQRRLARVLGTARSLD 412

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
                            A A  ++   ++   A+   GLD      +   +  +      
Sbjct: 413 A------------DIADALAHWLTHPDSNGLEALAAQGLDRDHIIDVLVELARRRARRGP 460

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                                +     + L  +   ++ R ++   +      S+ R+  
Sbjct: 461 LLLICDDLHW-----------MDSGTAEFLRRLYQRLHDRPLLTLLTARMSFRSNWRDVP 509

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
           +   ++  +    +   +   D        +   L    +        +T     A R  
Sbjct: 510 LEHLRLHALPDQAAHELIERCDTRHRLTKHLRAQLIERGEGVPLFLEELTRYTLEAARTG 569

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
                    +       L  T  +  L      I +  D   ++ L++ P A     +  
Sbjct: 570 TLPDTLPPGLANLLVARLEQTGTARDLAHAAAVIGRDFDTRILSHLLEQP-ADTIRRQLS 628

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
               +  +E V +           L              T +    + L  +D+  + + 
Sbjct: 629 RLTGRGFVEPVGVLDGVRYRFRHALFQQAAYESMLVAERTRLHGRLADLLRDDQGTSNID 688

Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
              +   +           +       +    + +                L   E  + 
Sbjct: 689 WGQVASHLYHAGRVDEAVPAWLEAGEAAFARGMLLEASHYFEDALSCLDRELGDREPSEE 748

Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF--------ILGTLE 635
             +   + +          + +       I   T+     +   +           G   
Sbjct: 749 RDAQTQRALGGLGASNLALLGYGSRTVHAIFERTLGITAPQRDAVQYFRVLWGLWHGAGS 808

Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695
               +    +   + +     N       +  +Q + +  + +  +        +A    
Sbjct: 809 WHGFDEAHRLANDMEQVAEQSNDRLLRIAAHYVQGNTHFWSGQLPLALEHQTQALALYRE 868

Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
                   R    P I+SR      +L   +     ++      +        T+   Y 
Sbjct: 869 DDHPHLVARHTENPAISSRGFMAWTLLFFGNHARAWEEMDAACAEAAALEHRPTEAFVYA 928

Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
                              +    +DP          L     +     R     L H  
Sbjct: 929 FRA---------------ALGFFADDPDEALTSARRALAIAEDYDYPLWRASGLALQHWA 973

Query: 816 ITELIKKRINKNTPEINHLMKQIID 840
           +             E    ++ I+D
Sbjct: 974 LARQGDTSAVAPLREQADALRHIMD 998


>gi|262198629|ref|YP_003269838.1| hypothetical protein Hoch_5462 [Haliangium ochraceum DSM 14365]
 gi|262081976|gb|ACY17945.1| hypothetical protein Hoch_5462 [Haliangium ochraceum DSM 14365]
          Length = 1236

 Score = 38.4 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 59/701 (8%), Positives = 152/701 (21%), Gaps = 30/701 (4%)

Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                L   +     RL          + +AL+ A++++L +             ++   
Sbjct: 240 APLQLLSELALPELRRLRATLERMRGEHLLALLAAQSDYLTRSQPARRAADDEQDALERE 299

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
                 VA+      +         T   ++  E   +   +        Q    K    
Sbjct: 300 IAAEQAVADQAERTALAAQQAALAETHRASSRAEALLSSEKAGLHELEQQQARFWK-EQV 358

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
           L  K      +          +     S                          + V + 
Sbjct: 359 LQEKSAMGAAVEAFKTTRETLAATPDASQRWELVRAALAESRAGALADVEALLAAKVDVP 418

Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
              +        A  L +    N ++ AL      LA R +    +    +    G  L 
Sbjct: 419 APPD-----ALSADILALPEAYNARRVALELQRTELATRAETY-AQALRELWRERGEVLH 472

Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482
               +     L        +   +               +      +AL  +  R     
Sbjct: 473 KHAETLYALRLEVLAELPAEQRRVLHRPFEARTHQALRSEAQQVVLDALYWLNAR----- 527

Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542
           +  +      +  + T             +    +         + + +  + T      
Sbjct: 528 WTQLRRAPAAMQELGTLGAALWWLFDLIIILWLLRGALRHWEAWMQRSVEFIGTTLPVGP 587

Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
            T     + D+ +     L  +             +      + L +  +     +   A
Sbjct: 588 WTLLLARLCDFARNFGPPLLWLAAWTVFYHQLGGSQ----GPAELQAAFVVAFWTLLFRA 643

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662
                     +     + +     T  +     + + + D     G         +  + 
Sbjct: 644 QMTFVERGTALIESNAQERARDIDTELVESGAFATVSDADAEAHAGERGSGDASTSGASS 703

Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722
             +      L++   +  + + A            I    +       ++      L + 
Sbjct: 704 ATADTRTKTLSIARIQWDVARRAWYVLSGCAALIAIGLDLVELATGRGVSYGLAVDLALW 763

Query: 723 GGTDFFDNLK--KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
            G           RG        +L  +++   +                + S +     
Sbjct: 764 IGLLALAICLHVWRGAIVDVVRSQLSNSSRLARFTDVHGRRFYGGAVAGAALSVVV---- 819

Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840
                  RR+           +        LF   + +   +       +    +   + 
Sbjct: 820 ------LRRLASFSRRRVAGMEATNRMLAFLFRRRVEKHAAEL--GRVLDSPRPLPAELL 871

Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
             F  + L      +      +I  +F   E +       +
Sbjct: 872 EQFPLDALSSSGRPVKPRSLVQIKETFAVWERERLQGSVAV 912


>gi|162449090|ref|YP_001611457.1| polyketide synthase [Sorangium cellulosum 'So ce 56']
 gi|161159672|emb|CAN90977.1| polyketide synthase [Sorangium cellulosum 'So ce 56']
          Length = 2591

 Score = 38.4 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 57/637 (8%), Positives = 130/637 (20%), Gaps = 19/637 (2%)

Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
                            P  SL   L  L         L  +     G       +    
Sbjct: 341 DATEIATLKEVFGSREVPLGSLKSNLGHLVTTAGAAGLLKLLGAMAAGVRPPTLHADPLS 400

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
           +        +L+   P   +  + ++           +  A     S      ++A   A
Sbjct: 401 EAVASSPFRVLQRAEPWEGRRLAGLSAFGFGGNNAHLLVEAYEP-SSPRGRAARAAPQAA 459

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                          G    ++ G+ +          +      +  D    A  +    
Sbjct: 460 AAASRPVDAGRPAPAGHLAVVAMGLCVGELSGVRAF-AEPLLSGRGADPRRAAVALPADR 518

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
            +F   +   + A+  L    L     + + + L       +     +T V  + +R   
Sbjct: 519 LRFPPRDLQQALAQQTL---LLEAAIEATEGLALPRDRTAVLIGMGADTEVCRYMTRWRL 575

Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574
            +   A L     +  +   +          GN+  +       + L             
Sbjct: 576 AETAPARLGPSVDVGALQDAIIPALQAAGVVGNMP-NIPANRLNSQLDVGGPSFTIAAEE 634

Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           L      +  S          + + A  +         ++   V+     ++ + +L  L
Sbjct: 635 LSGPWALRVASRALRAGAVDAAIVGAVDLSCEPAHAAALEALGVRLPPGDAAVVLVLERL 694

Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG--QAAHDFEMAN 692
           +  +     ++   ++E   P     +  L+                    A       +
Sbjct: 695 DDAVRERHPVLAVVVDEPADPGLVLSSTDLAPRFGHAHAASGLLHVAAAVLACRHGRKPD 754

Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752
           G       R                R+   G        +      L             
Sbjct: 755 GAPWSDEIRVAEVRCAGLGGGSLSVRIGAGGPAAPLPPPRSAEGPTLTLPA--HPPAIVV 812

Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQL---INDPYAVYARRILKLDFIPHFKKDPDRTDRG 809
                   P    +P     S +  L      P    A    +                 
Sbjct: 813 PGAASCSSPGDSMEPAPPLPSALDDLPPLYPGPTGFSAADADRAPSWDEPPPVGPAVVTA 872

Query: 810 TLFHNIITELIKKRINKN------TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
                                     ++            +               F ++
Sbjct: 873 VAASLAEEPPPVGPAVVAAAAVDIPGDVIAGAAAFTVQLAQIHKEWAEQQAQVHRRFLQM 932

Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
               L+   +  S    + V  P      +  + + G
Sbjct: 933 RQRALDSLVQASSGAAAVVVETPLAQVPHAAPVRIEG 969


>gi|153006150|ref|YP_001380475.1| non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029723|gb|ABS27491.1| Non-specific serine/threonine protein kinase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 1002

 Score = 38.4 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 79/693 (11%), Positives = 165/693 (23%), Gaps = 38/693 (5%)

Query: 80  SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL- 138
           SL +V  +   A +     + P V+   R    A  +   R+ L   ++    E P    
Sbjct: 255 SLAEVWPDLERAAMEAGVEIPPEVARTGRRAIEAERLERRRHALDAEVRAAGAEPPGLRM 314

Query: 139 ---PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI-ASKY 194
              P       +LA     ++       K  + + A+                       
Sbjct: 315 KLYPYQVEGVAFLASRGRALLADEMGLGKTAQAIAAMAQLVRRGDVRRTLIVCPTSLKHQ 374

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
           W   L +     PV   +     EA   +     P+++     +      L        +
Sbjct: 375 WVRELRQFTTLEPVDIGVVAGAREARRAIYAEARPVLVTSYELARADEREL-------SD 427

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT--------------YSTHPQYSLAKLL 300
            A  L  LD       W T T        S                   +  Q    ++ 
Sbjct: 428 LAPDLLILDEAQRIKNWRTRTASVVKGLRSRFAFVLTGTPLENRLDDLYSLMQVVDPRIF 487

Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360
             L    E+   L         R++   ++ + P     R  ++L +    +    +   
Sbjct: 488 GPLWRFNEEFTTLDGSGRPAGYRNLDRLRARIAPVVLRRRKEEVLSDLPDRLVSRLTVAM 547

Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420
             E      +A   A  L   L                 +R+++     G+    + G P
Sbjct: 548 TREQQEIHADAEESAGRLLAILRRRPLSPVEEQRLMRAFQRMRMACDAAGLVDKKTRGAP 607

Query: 421 -----LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
                        +       +F   + M             G    +      A   + 
Sbjct: 608 KLDELERLLEEICLGDRRKVVVFSEWERMQAMAAELCERLGVGHVRLHGGVPSAARGALI 667

Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHV----PHWQSRLSEEDKELAVLLVDHILQCI 531
            R   +    + L +         +  +HV      W   +  +       L       +
Sbjct: 668 DRFRDDPECRVFLSTDAGGVGLNLQAASHVVNLDLPWNPAVLAQRIARVHRLGQREAVNV 727

Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591
             LV+  + +      L   D  +           +      +         L   F+  
Sbjct: 728 VLLVSEGSFEERLEATL---DGKRALFAAAVGDDHETVELERSSMARRIATLLWGEFAAT 784

Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651
              G+ +  +A     +  R+        ++     + ++        +   ++L     
Sbjct: 785 TGRGAAVAPSADPVAALRERVGGALEQVVRLADGRLVGVVRGEAPSGGSDGAILLPARAA 844

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
                  + +P     +             G AA    ++   R  +   +L     P  
Sbjct: 845 EALHPLGSASPLAGAEVLYRAPPGPGAADPGLAARRDLVSVAERKRVGGAALLAAGQPAE 904

Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
           A    +  + L                      
Sbjct: 905 ALGLFRDAMSLASRALDPRGDPGSDPASLLAAI 937


>gi|269128195|ref|YP_003301565.1| acyl-CoA dehydrogenase domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268313153|gb|ACY99527.1| acyl-CoA dehydrogenase domain protein [Thermomonospora curvata DSM
           43183]
          Length = 734

 Score = 38.4 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 58/487 (11%), Positives = 116/487 (23%), Gaps = 46/487 (9%)

Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL--NA 204
            LA ++  + +   T +   E + + ++ +   +W   AD   +   +  E         
Sbjct: 11  ALAASVRGLAERHITAQVVREAVESAEHPRRPRFWQALADQ-GLLGLHLPEEYGGQGFGL 69

Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264
                    L RA A      T        +  S  A A L+  +A+    A V    D 
Sbjct: 70  VEQAVALEELGRALAPGPYVPTVLAAAAIAAYASKEAKAALLPGLADGSRTAAVALRGDF 129

Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324
                            T    T +      L    D   +   +  ++  +      R 
Sbjct: 130 TAAPGGDGGARISGATETVLCATQAD--LLVLPLGEDRWAVVDAEAAQITALDALDLTRP 187

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
           +   +       ++      L +    +    +      A    EEA   A         
Sbjct: 188 VARVEVSDVTVPAERIFQGALGDLAVVVLGAEA---CGVAGRAVEEAAGYAKIREQFGRP 244

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
             +   +                                   + +L +   A   + D  
Sbjct: 245 IGQFQGI-------------------------------KHKCARMLIAAERARAAVWDAA 273

Query: 445 AIATLVKHP----LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500
                 + P     A           A +  E          Y       L   R  T +
Sbjct: 274 RAIDAGEEPDQRGYAIAVAGALVADAAVDCAEDNIQVHGGIGYTFEHDAHLYYRRAMTLR 333

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                P   SR  E    LA+  V   +    P    +  +        +++    T   
Sbjct: 334 ALIGRP---SRYRERAARLALAGVRRPMDIELPPEAEQLRERVRAEVAELAEMDPFTQRA 390

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
                      LP  W ++ G     +  + ++         +    ++  L+   T + 
Sbjct: 391 AMAEGGWVTPHLPKPWGKDAGPVEQIVIQQELKRAGVRPVPLMIAGWVVPSLVAYGTPEQ 450

Query: 621 KIEKSST 627
           +      
Sbjct: 451 QQRFLPP 457


>gi|209965406|ref|YP_002298321.1| probable maltokinase [Rhodospirillum centenum SW]
 gi|209958872|gb|ACI99508.1| probable maltokinase [Rhodospirillum centenum SW]
          Length = 1865

 Score = 38.4 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 67/768 (8%), Positives = 158/768 (20%), Gaps = 28/768 (3%)

Query: 26   LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85
            L+G +             L      +P   A + +    +    +   +L  +  +  V 
Sbjct: 304  LDGWVESAKAMARRALDSLDGAVAVLP--AAARPMAEALLARRSELPGLLQALLPVTAVA 361

Query: 86   EEKFTADLLLSYNL--NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143
              +   DL L   L        +    E   L  +   +              S   + A
Sbjct: 362  RTRHHGDLHLGQVLVTPDAADAVIVDFEGEPLRPLAERRARHSPLRDVAGMLRSFSYAAA 421

Query: 144  NAIWLAKNLA-DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202
            +A   A     D +     E         L   +                +++       
Sbjct: 422  SAGRQADRARQDALARWAGEAAGTFLETYLTAAEGSPGCAATPGETVRLVRFFMLEKALY 481

Query: 203  NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262
              +  +  +   +      ++       I+      +P+           P GA +  G 
Sbjct: 482  EVAYELANRPDWVEIPLAGVLA------ILDDGEAGVPSPRTGAVRRHRMPFGAELREGG 535

Query: 263  --DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320
                 +       +  +                + L         +   +   G    + 
Sbjct: 536  GVRFRLWAPAQTALRLELDGGILDMAPVEGG-WHELVSERAGPGSRYRFLLPDGTAVPDP 594

Query: 321  YGRSMVIS-KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379
              R                       + +    ++       I A        +    L 
Sbjct: 595  ASRHQPEDVHGPSEVIDPAAYRWQAADWRGRPWEEAVLYELHIGAFTPEGTFRAAIGKLD 654

Query: 380  MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP-----LSTTLHSSILTSLL 434
                       ++        R            D S G P     L    H+  L  +L
Sbjct: 655  HLAALGVTAVQIMPVADFPGTRNWGYDGVLPYAPDGSYGRPEDLKALVDAAHARGLMVML 714

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            + ++           +  P             A N  +    R  ++      L  +   
Sbjct: 715  DVVYNHFGPEGNYLSLYAPAFFTEKHHTPWGAAVNY-DDTGSRTVRDFVIHNALYWIEEF 773

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
             +   + +               ELA  +          LV       +   + +    T
Sbjct: 774  DLDGLRLDAVHAIIDETEPHLLTELAREVRHRFPGRHVHLVLENEENEAARLDRARDGAT 833

Query: 555  KLTVTCLQ-------NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             L             +V            +  +   L    ++       + A       
Sbjct: 834  ALFTAQWNDDVHHGLHVAATGESAGYYAEYAGDLDKLGRALAEGFAFQGEMMAYRGAPRG 893

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
              +  +        ++    +      +          +  +             F+   
Sbjct: 894  EPSAHLPPTAFVAFLQNHDQIGNRAFGDRITATAPAKAVRAVAGLYLLAPQIPMLFMGEE 953

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
              +         +  + A             +     E     I     +   +    D+
Sbjct: 954  WATGRPFPFFCDFGPELATAVREGRRKEFARFPEFRDEAARARIPDPTAEATFLSAKLDW 1013

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
                ++     LDW R++    +     R         +      S +
Sbjct: 1014 EALEREPHARRLDWYRRMLALRRAEIVPRLTGVGAGAGRYERIGESGL 1061


>gi|75550355|sp|Q6X2U4|POLN_RUBVB RecName: Full=Non-structural polyprotein p200; Short=p200;
           Contains: RecName: Full=Protease p150; Short=p150;
           Contains: RecName: Full=RNA-directed RNA
           polymerase/triphosphatase/helicase p90; Short=p90
 gi|32442343|gb|AAP82232.1| ORF1 [Rubella virus]
          Length = 2116

 Score = 38.4 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 47/519 (9%), Positives = 103/519 (19%), Gaps = 44/519 (8%)

Query: 375 AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
           ++ L   ++E ++ +A+   DR         L             PL      +    + 
Sbjct: 435 SVPLAERMEEWEQDAAVAAFDRGPLEDGGHHLDTVQPP------KPLPR-PEIAATWIVH 487

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            A                P                  E +           +  +    +
Sbjct: 488 AASADR-------HCACAPRCDVPRERPSAPAGPPDDEALIPPWLFAERRTLRCREWDFE 540

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            +  + +    P   +            ++        P +T      +    +      
Sbjct: 541 ALRARADTAATPAPLA----PRPARYPTVLYRHPAHHGPWLTLDEPGEADAALVLCDPLG 596

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           +      ++     H        +   + +        + G+   A          RL+ 
Sbjct: 597 QPLRGPERHFAAGAHMCAQARGLQAFVRVVPPPERPWADGGARTWAKFFRGCAWAQRLLG 656

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              V         +  L  L  R L      L      +          ++  +++D   
Sbjct: 657 EPAVMHLPYTDGDVPQLIALALRTLAQQGAALALSVRDLPGGAAFDANAVTAAVRADPGQ 716

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
                           A          S R  +          R             +  
Sbjct: 717 LALTSPPPDNPPPPRRARR--------SQRHADARGPPPPAPVRDPPPLPPSPPAPRRAG 768

Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                      D           +P  P            ++        V+ R    +D
Sbjct: 769 DPASPISAEPADRARDAEPEVACEPGGPATPTRADPDSDIVESYARAAGPVHLRVRNIMD 828

Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK------------------ 836
             P  K   +  + G L  + +   I         E    +                   
Sbjct: 829 PPPGCKVVVNAANEGLLAGSGVCGAIFASAAATLAEDCRRLAPCPTGEAVATPGHGCGYT 888

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
            II +   +    P        L  +   S +      +
Sbjct: 889 HIIHAVAPRRPQDPAALEQSEALLERAYRSVVALAAARR 927


>gi|170700958|ref|ZP_02891941.1| amino acid adenylation domain protein [Burkholderia ambifaria
            IOP40-10]
 gi|170134131|gb|EDT02476.1| amino acid adenylation domain protein [Burkholderia ambifaria
            IOP40-10]
          Length = 3036

 Score = 38.4 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 46/523 (8%), Positives = 116/523 (22%), Gaps = 29/523 (5%)

Query: 374  IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG----IPLSTTLHSSI 429
             +  ++  +D+ +    ++        ++   +     ++++S G      L        
Sbjct: 1124 ASGWIQEVVDDPEIPVGVV---EIGRDQLAQHVAHAHASLNLSDGPVVRADLFRVDEGRS 1180

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
            L  LL A   + D ++   L++         + Y           A  G   +     + 
Sbjct: 1181 LRLLLVAHHLVIDGVSWGALLETVY------DAYTRLRHGQGPEFAGGGATWTAWTRAIS 1234

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
                   A           ++ L     + A     + +     +V       +     +
Sbjct: 1235 DWAGSGAADADLAHWQALARATLPGLPLDRAATAAANSVSSAETIVVELGESATAALLSA 1294

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
                    +  +    L       +   +      +    ++I        +    +   
Sbjct: 1295 APRAYDAQINDVLLAALARAVGDWSGCADVLVDLEAHGREELIAD-----LDISRTVGWF 1349

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
            T L                 +              I  GL          +   L   + 
Sbjct: 1350 TSLFPVVLTVDAGSHDPARLVASIKTQLRAVPSAGITYGLLRDRLDGPVPRPRLLFNYLG 1409

Query: 670  SDLNLKTAEKYIGQAAH---DFEMANGTRHLIY-TRSLRENNIPTIASRWLQRLLVLGGT 725
                +  A +   QAA    D   AN  R  +    +    N   +A  + +        
Sbjct: 1410 QTDQMLNAARDWKQAAEPSGDGRNANQLREHLLDVNAYVTGNRLHVAWEFSRACHDADTI 1469

Query: 726  DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785
                         L     +   + +P   +P    P                +      
Sbjct: 1470 RRVAQAYIAALESLVADHAVQSASARPASGQPANALPQALASVIPDEIADVYALTPTQQG 1529

Query: 786  YARRILKLDFIPHFKKDPDRTDRGTL----FHNIITELIKKRINKNTPEINHLMK---QI 838
                 L       +    D    G L    F      +  +     T      ++   Q+
Sbjct: 1530 MLFHGLYEPASDAYFSSLDFRIDGALDVEWFRRAWETVAHRHDILRTSFHWEEIESPVQV 1589

Query: 839  IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881
            +    +       +         +   +++  +        + 
Sbjct: 1590 VHRRIDLPWHDEDLRAASAEEAERRWAAYVAQDRARGFDFTRA 1632


>gi|71068223|gb|AAZ23078.1| peptide synthetase [Streptomyces fradiae]
          Length = 2384

 Score = 38.4 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 67/701 (9%), Positives = 167/701 (23%), Gaps = 41/701 (5%)

Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266
           P+  ++ +     + L +  +    +        A  + ++      +  +         
Sbjct: 295 PLRARMPVDEPLTDFLRRLQREQSALLDHQHLRLADIQRLAGQGELFDSVMAFENYPDGP 354

Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL-DFLDIKREDVKRLGNVSNEMYGRSM 325
                    +   ++    +       Y L  L      ++     R   V+  +     
Sbjct: 355 ADEPSGASADTPGHVRVVASRMRDAMHYPLGLLASPGTRMRFRLGHRPSAVTPRLAAALR 414

Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                 +    +         + + + ++        +  +E E+  ++ + LR +    
Sbjct: 415 DRLLRLVDAFLATPHLPLGRFDVLDDAERALVLDTFNDTAHEVEDTTAVELFLRQAARTP 474

Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445
            + +                        D S            +   L        +   
Sbjct: 475 ARIAV--------------------ETADRSVDYARLADRSGRLARLLAE-HGARAERFV 513

Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505
              L + P         + + A       A   ++ +  + +   ++    A   +    
Sbjct: 514 ALVLPRSPELVETALAVWQTGAAYVPVDPAHPADRMARLLREADPVLTVTTADLADRLPA 573

Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                 L       A+  +       + L      +N+     +     +       +  
Sbjct: 574 GLPLLVLDGPSTAAALQALPGGPLTASELPAPVDPRNAAYALYTSGSTGRPKGVVATHRS 633

Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625
           L  +    +  +  +G++L         T   +    I    +    +D E V    E  
Sbjct: 634 LVGYLLRGSAQYPSDGRSLVHSPVSFDLTVGALYVPLISGGTVRLASLDDEPVLRPGETP 693

Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685
                +      +L      L G                 R ++                
Sbjct: 694 PDFVKVTPSHLPVLE----GLPGEVSPTGAITFGGEQLTGRHLRRWRADHPDVTVYNVYG 749

Query: 686 HDFEMANGTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                 N + H I  R  + +  +P     W  RL VLG       +   G+ Y+     
Sbjct: 750 PTETTVNCSEHRIAPRDPVGDGPVPIGRPLWNTRLFVLGPGLAPVPVGVPGELYVAGAGL 809

Query: 745 LD-YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
              Y              P  A  R Y   ++ +   D    Y  R+     +  F+ +P
Sbjct: 810 TRGYLRDPGRTAERFVACPYAAGQRMYRTGDLVRWNEDGLLEYLGRVDDQISLRGFRVEP 869

Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863
              +     H  +             +   +   +        + PP      +    + 
Sbjct: 870 GEVEAALAAHPAVRRAAVVLREDTPGDARLVAYAVPAEPEGARSTPPSPLPTEQ--ILEH 927

Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904
               L         +    +     + + ++ +   G  DR
Sbjct: 928 LRRTL------PPYMVPAHL-----VELPALPVTPHGKIDR 957


>gi|323448598|gb|EGB04495.1| hypothetical protein AURANDRAFT_67157 [Aureococcus anophagefferens]
          Length = 4616

 Score = 38.4 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 49/608 (8%), Positives = 114/608 (18%), Gaps = 47/608 (7%)

Query: 252  HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
               G   +       P          +   T +     T     L   L  L     + +
Sbjct: 3590 AEMGEDRVARARPRTPPENVADAPRAAEAPTPAGDRDRT---RRLFGALRALGAPILEAR 3646

Query: 312  RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
                        +                   +  +++           L          
Sbjct: 3647 YWPPDRRGAVVAAANGGSVKAKALRCLGAAPALKWDRLDGAATTALLEELHPCATSPSLV 3706

Query: 372  ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
             ++               A +  + +L       L         +          ++ L 
Sbjct: 3707 ATLRT--LPLFKTLGGDFAPLGGEGDLEALSPRALDAVRPYAAPADLAGFLERPATAALR 3764

Query: 432  SLLNAIFKLNDFMAIA--TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
             L   +      +A A   +    L     P        + L        +    ++D  
Sbjct: 3765 DLYADLRVPEVDVAAAAARVCAPRLKAGDLPPAVERDLVDFLVEHWDPELRRCQPLVDAL 3824

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKE--LAVLLVDHILQCITPLVTYKTNKNSTCGN 547
            +                    + ++E  +      L   ++                 G 
Sbjct: 3825 APCAFVPVGPAEPDRSAPRAKKRADELLDPQAHEALDAALVPAADCRSAPWLRLLRDLGL 3884

Query: 548  LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
                D               +      L          +    ++ + + +         
Sbjct: 3885 KRRVDAKTFLDAAKAAAAAADAGAARRLLKALYTDHALATDDGLLASLAPVAFVPCC--- 3941

Query: 608  IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                   G  V         L   G      L    L                     RV
Sbjct: 3942 ---DYARGGDVVDDFSSFDALVAPGDRRVAWLGAKVL--------------RPGDAPPRV 3984

Query: 668  MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
            + + L L++                     +   + R    P  A R +  L   G  D 
Sbjct: 3985 LWNPLGLRSPP---------------APATVLAHARRLAADPGAACRAVAPLGG-GAHDA 4028

Query: 728  FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
            +       + +      LD              P     P       +  +       + 
Sbjct: 4029 WRRGVAPAEAFGALFDYLDAAWDDLSPAVRAALPSFALVPTDLDARRVATVAAASGTAFL 4088

Query: 788  RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847
               L  D             RG    +++             ++   ++++     +   
Sbjct: 4089 E--LPDDEPWALAPLLFEVPRGLPSRDVLERRFGVLRAPAPGDVAAALRRLGARRLDPNE 4146

Query: 848  LPPHIDII 855
            +     ++
Sbjct: 4147 VRAACRLV 4154


>gi|66047547|ref|YP_237388.1| ATP-dependent helicase HrpB [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258254|gb|AAY39350.1| ATP-dependent helicase HrpB [Pseudomonas syringae pv. syringae
           B728a]
          Length = 844

 Score = 38.4 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 30/380 (7%), Positives = 87/380 (22%), Gaps = 10/380 (2%)

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
           + + +         +        R+S             +   +   +  +   +     
Sbjct: 294 IDAGLARVPRFDPGSGMTRLETQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAY 353

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +              +          +W +       +    ++     +     +   
Sbjct: 354 GAAEILQADLAGLALQLARWGVTPAQLVWLDVPPAAAYAQAQDLLVRLEALNNQPGQPPA 413

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
           +         +      +  L     L    L  D   L    + +       +  L+ +
Sbjct: 414 LTPHGQAMAELPAHPRIAHLLLRGHALGLGELACDVAALLAERDILRGAGADLHSRLTLL 473

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
             ++   + A+  + +A       +         +          SRWL  LL L   D 
Sbjct: 474 AGTERAARGAQGGVQRAR----QLSRQYRGYLRGAANSPVSDPDHSRWLGALLALAYPDR 529

Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
               ++ G               +      +P+  +          E +  +   +    
Sbjct: 530 VAQQRRAGGAEYRLANGRAALFAEADALMKQPWLVIADLGSRQGQREERIYLAAEFDPAL 589

Query: 788 -RRILKLDFIPHFKKDPDRTD---RGTLFHNIITELIKKRINKNTPEI--NHLMKQIIDS 841
              +L    I   + D D  +   R      +   +I +       +   +H +  ++  
Sbjct: 590 FDSVLAEQVISVDQIDWDEREGVFRAERQRKVGELIISREPLTGLDDATRSHALLALVRR 649

Query: 842 HFEKENLPPHIDIIWRHLFH 861
              +          W+    
Sbjct: 650 KGLELLPWTAELRQWQARVA 669


>gi|330881401|gb|EGH15550.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 801

 Score = 38.4 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 67/642 (10%), Positives = 159/642 (24%), Gaps = 77/642 (11%)

Query: 388 KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL---NDF 443
             A++  D   A+ V+ +L  R   ++ +S    +     +  L S L A  +       
Sbjct: 146 DIAILVRDGKEAQAVRQQLSARGVRSVYLSDKDSVFVAQEAHDLLSWLKACAEPDSERTL 205

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            A    +   L                  ++  RG +  +    +  ++   +       
Sbjct: 206 RAALACITLDLPLAELERLNQDELAWEQRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQ 265

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
            +        E      + L + + Q    L   +        +L++S          Q 
Sbjct: 266 TLM--TRTDGERVLTNLLHLSELLQQAAAELDGEQALIRHLGDHLALSGQAGE----EQI 319

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR--------LIDG 615
           + L+   +L  +    + K L      +    S    +                  L   
Sbjct: 320 LRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDADGNSQISLQPT 379

Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675
           E +  + +       L  L   L   +     G+ +      +      S +        
Sbjct: 380 EALIQQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNASNSMLHRSALGYLLGGGV 439

Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN----- 730
              +         ++A G   +         +    A R    L+ L             
Sbjct: 440 LLAESAELKVWLRDLAQGCDAIALQPVPEPTDERFSAPRNEAALVKLLVPKRRAAENWWI 499

Query: 731 ----LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
                 + G        +   + +       +   P   +  + S  +I +    P    
Sbjct: 500 ASYSALRIGDTVTTGADESPDSPQAQKLFDDERLDPEAPRDISTSGGDIHRFPRGPNPGT 559

Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID------ 840
               L L++  +            L   +     ++        ++  ++ +++      
Sbjct: 560 FLHGL-LEWAGNEGFALTAHTPELLRDAVARRCSRRGWAGWIDTLSDWLQHMLNMPLRLS 618

Query: 841 --------SHFEKENLPPHIDIIWRH-------LFHKISHSFLEHEEKIQSSIEKIFVNI 885
                      ++ N        W             +   F        ++  +     
Sbjct: 619 PDATPVALDELDQPNQYRIEMEFWFASNNVNVAQMDALVRRFT------HNNAPRAATE- 671

Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA-----------QKLID 934
              +++        GF D     + G   + DYK+      +TA               D
Sbjct: 672 --TVSLNG---MFKGFIDLTFEHE-GRYYVADYKSNWLGTDDTAYTELAMETAILDNRYD 725

Query: 935 PQLSLEAAALKAGSFSQID----CRKVANLFYIRLKQKFKID 972
            Q  L   AL     +++      + +    Y+ L+    + 
Sbjct: 726 LQYVLYLLALHRQLKARMADYDYDQHMGGALYLFLRGSRSVS 767


>gi|315604865|ref|ZP_07879923.1| exonuclease SbcC subfamily [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313404|gb|EFU61463.1| exonuclease SbcC subfamily [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 1031

 Score = 38.4 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 57/645 (8%), Positives = 140/645 (21%), Gaps = 23/645 (3%)

Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
           L    A              A            +  S        R           A  
Sbjct: 225 LAASLAEHDGERSGEEAAGAASETPSLHGQADTLDASAQDPTPVRRWADRACRDARAAHE 284

Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318
               D      +     +      +     + H        L+ L     ++  L + + 
Sbjct: 285 RAQADALDAANLAREAAQALDRGRALAADQAEH--ARTTARLEELRGAEPEIDALRSRTA 342

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
                  V   +      +                    +   + + +   E ++  +A 
Sbjct: 343 NARRALAVAPYASSAASAARRLEEAADRVASCARGLAAEEDIPLSSQDLTLEVVADLLAR 402

Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
             +L +   ++        +  R    L      ++ S    L+    +++ +       
Sbjct: 403 AHALRDEATRTLGALEATLVQERSLPGLAEEISALEESHRGALA--AVATLESQRDTLPA 460

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
            +    A  TL++            L      LE         +      + L       
Sbjct: 461 VIERAQASLTLMRSDADALPDKRAALHALDRRLEASRQADLLRAALPGASEELREATAGA 520

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY----KTNKNSTCGNLSISDWT 554
           +  N            +        ++  + C               +       ++D  
Sbjct: 521 KLANAAAADAHDLWIAQSASAIARELEDEVPCPVCGSPDHPCPAPPLDGEITREQVADLD 580

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           +        +          +    +    ++  + ++ET     A  +  +D +   I 
Sbjct: 581 RARDRAEDALRDARSTHQDMVRRIAQLNEAAAGPTALLETQRDQAALEVAALDALKPRIA 640

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                   E  + +       +  L         L   +  + +A       V       
Sbjct: 641 SLE-----EDLAQVREQLDGITDELTRARERAASLASQLAERRSALAHTQRHVEGERQGF 695

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
            + E    +AAH  + A      I   S  +                L   +   +  +R
Sbjct: 696 PSLE---ARAAHLDQRAQRAASTIGACSDWDGARRAHDEALRSLARALESQELASDTWER 752

Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                D    L+        +  +    L A     +   + +    P    A       
Sbjct: 753 LLLTRDEVDALET-------RINEHEKELYATRDALTSDRLVRAAACPEPDIAALADASQ 805

Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839
                  +  R       H    +  ++ +  +   +    +Q  
Sbjct: 806 RAGDASAEATRRAGRLEQHCAQLDAARESLGASLAALADAREQAG 850


>gi|289208744|ref|YP_003460810.1| chromosome segregation protein SMC [Thioalkalivibrio sp. K90mix]
 gi|288944375|gb|ADC72074.1| chromosome segregation protein SMC [Thioalkalivibrio sp. K90mix]
          Length = 1164

 Score = 38.4 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 62/689 (8%), Positives = 152/689 (22%), Gaps = 74/689 (10%)

Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251
            +       +  A + +    A  +       +       +AG+                
Sbjct: 218 YQTLAAERRQKRAEAILLRLRAQEQELEASRQRLQDAETQLAGTQAEAQKVRTETEQQRQ 277

Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311
                     +D    T    +         S       H +  LA+    L    + ++
Sbjct: 278 TR--------VDLEAATTEAQSAYYDRAAEVSRLEQSIRHAEDELARERAELQQLEQRIQ 329

Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371
             G+    +  R +   +                E      ++  ++            A
Sbjct: 330 TAGDEFAALEQRIVEAERERDQRQQEAETAEAERERLEAAAEQAENEFQA---------A 380

Query: 372 ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431
                    +L E ++ + L  +  + A      L +    +D      L  T       
Sbjct: 381 REAQSEWERALAEPRQNAQLARSRMDHAEHQLARLAQRRERLDAE-RAALPQTHPG---E 436

Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491
                  + +        ++H   +       L+ A+           + + ++    + 
Sbjct: 437 EAERLQRERDALAERLEELRHEREQQQEQLNQLTEARREARDALHEAEREAREVAGRLAG 496

Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
           +                ++   E+  +L+  LV  +                T   L++ 
Sbjct: 497 LEHFAGEDDPAETRERREAWAREQGLDLSRPLVQQLEV---------DEGWDTAVELALG 547

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            W +  V        D       L   E G         +                I   
Sbjct: 548 AWLEAAVLDAPEATRDWPDAALRLVSAEPGADAEIPRDSLAARVRGSAPVGHWLARIHCA 607

Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671
               +  +     +    ++    + +                   T +      V +  
Sbjct: 608 TELEDARRRMATLAPDESVMTPDGTWMGPGWVA-----------HRTLEGGASGAVARVR 656

Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731
           L  +  E+         +           RS           R   +L    G    D  
Sbjct: 657 LARELREREQALQGQIEQHQATLAE----RSEAIEAAQAERDRLDAQLREQQGE--IDER 710

Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
            +R Q   D  R+L+    +  ++  +           ++ +E +            R  
Sbjct: 711 DRRIQRLHDQARQLEQQQARIDHEAGELEEETARAREQFATAEQE------------RNQ 758

Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
            L  +     D +  +                  +         ++ +    +       
Sbjct: 759 ALATLETLDADGEALE---------------NRLEAARGTQGRARESVREARDAAGRARM 803

Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEK 880
            +   RH   +        E +     E+
Sbjct: 804 AEQEARHRLEREQSEHTRLERQRAEDRER 832


>gi|320330559|gb|EFW86538.1| ATP-dependent helicase HrpB [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 719

 Score = 38.4 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 28/386 (7%), Positives = 81/386 (20%), Gaps = 22/386 (5%)

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
           + + +         +        R+S             +   +   +  +   +     
Sbjct: 169 IDAGLARVPRFDPGSGMTRLETQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAY 228

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +              +          +W +       +    ++     +     +   
Sbjct: 229 GAAEILQADLAGLALQLARWGVTPAQLVWLDVPPAAAYAQAQDLLVRLEALSNQPGQPPA 288

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS-- 665
           +         +      +  L     L    L  D   L G  + +       +  L+  
Sbjct: 289 LTPHGQAMAELPAHPRIAHLLLRGHALGLGELACDVAALLGERDILRGGGADLHSRLTLL 348

Query: 666 ----RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
               R  +         K + +  H +        +I              SRWL  LL 
Sbjct: 349 AGTERAARGAQGGVQRAKQLARQYHGYLRGTAKSPVI----------DPDHSRWLGALLA 398

Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
           L   D     ++ G               +      +P+  +          E +  +  
Sbjct: 399 LAYPDRVAQQRRPGGAEYRLANGRAALFAEADALMKQPWLVIADLGSRQGQREERIYLAV 458

Query: 782 PYAVYARRILKLDFIPHF----KKDPDRTDRGTLFHNIITELIKKRINKNTPEINH--LM 835
            +       +  + +         + +   R          +I +       +      +
Sbjct: 459 EFDPALFDSVLAEQVITVDQIDWDEREGVFRAERQRKAGELIISREPLTGLDDAARSQAL 518

Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFH 861
             ++     +          W+    
Sbjct: 519 LALVRRKGLELLPWTPELRQWQARIA 544


>gi|291403176|ref|XP_002717819.1| PREDICTED: spectrin, beta, non-erythrocytic 5 [Oryctolagus
           cuniculus]
          Length = 3573

 Score = 38.4 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 45/546 (8%), Positives = 119/546 (21%), Gaps = 25/546 (4%)

Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419
            L            + + LR +     +   L           +++L   G+   + A  
Sbjct: 248 RLRRGRTVHRRLTKVLLQLRETEALQTQYEQLAADLLRWIAEKQVQLEAPGLPDSLPAIR 307

Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE---------KYLSRAKNA 470
            L     S         + +     A+   ++  L                  L++    
Sbjct: 308 QLLAAFASFRTREKPPRLQQRGSLEALLFQLQTALRAQHRRPFLPPEGLGTAELAQRWAG 367

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
           LE      ++     +     +       ++   +     + +E++ + A+  +      
Sbjct: 368 LERAEAARSQALQQRLLQLERLETLARRFQHKAALRESFLKDAEQELDRAMSPLASPATA 427

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCL--QNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                     +                   L  +                   + L    
Sbjct: 428 EVATQRLGMLEAGILAQEGRFRALAELTDILRQERYHSWADVAHRQEELTRRWQRLLQSL 487

Query: 589 SKIIETGSCIKANAIEW--IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
               +  + + A        +  +  ++   V    +             R        +
Sbjct: 488 QGQRKQVAGLPAVLGLLREAEAASDQLEELQVPASSQACGQQLAEVVELLRRHELLEAQV 547

Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706
             L   V       +     +  S   L+   + +GQ           R  +  R+L+  
Sbjct: 548 SALGAHVSHLAHQTSGLARSLGTSVETLQAKARALGQLHQHVVSLIRARRALLKRALQRA 607

Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766
                     +  L             R    +    +     +    +       L  +
Sbjct: 608 -EFLRDCEEEEAWLAERRQQVETEAPGRDPRRIAGALQKHKALEADLRRHQAVCSDLVQR 666

Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826
            R  S               A +      +  + +      + TL       L+ + +  
Sbjct: 667 GRDLSAHGPPTQPEPRERAEAVQGAS-QQLRAWSERRGARLQATL-------LVAQYLAD 718

Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDI---IWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
                + L +Q     +E     P       +      +   +F    +++         
Sbjct: 719 AADAASWLREQRSSLEYELCGEDPAAAEGLLLQHVRLERSVRAFAAELQRLDEQARMAAA 778

Query: 884 NIPAKM 889
             P  +
Sbjct: 779 RAPLTV 784


>gi|167841931|ref|ZP_02468615.1| Amino acid adenylation [Burkholderia thailandensis MSMB43]
          Length = 3525

 Score = 38.4 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 41/546 (7%), Positives = 117/546 (21%), Gaps = 13/546 (2%)

Query: 327  ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386
             S+  L      +    +    +  ++     V  +      E A  ++     +  ++ 
Sbjct: 2227 PSRPRLALRRIAVSGEPLTRGLVRRVRALLPTVQCLNLYGSAEVAADVSAFALDACADSD 2286

Query: 387  KKSALITADRNLARRVKLELTRFGINIDISA-------GIPLSTTLHSSILTSLLNAIFK 439
                 +     L       L                  G  L+         +    +  
Sbjct: 2287 DPGPGVPVGAPLDNLCLHVLDANLDPAPPGGEGELYVSGAALAHGYLGQPALTAERFMPN 2346

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
                    + +             +         + +RG +   D ++     L R+   
Sbjct: 2347 PWARERGDSRLFRTGDLARVGPHGVEIVGRRDRQIKVRGVRVDLDGVEACLERLPRVRRA 2406

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559
                      + L    +         +   ++     +  +      + ++   K+   
Sbjct: 2407 AVIEQHGVLIAFLQCAPECDPDAWRQALRAQLS--AEARPAQFWRLEQMPLTPTGKIDRA 2464

Query: 560  CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
             L+               ++    L+ L+ +++      + +  +     + L+      
Sbjct: 2465 ALRTTSARRLESAAATSLDDVEAALAGLWRELLPDADVTRDSRFDEAGGHSLLLLQLGGL 2524

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
             +      L +   L +  L  +  ++    +                          ++
Sbjct: 2525 IERRFGCRLSVAELLAAPTLADEAQLVRA--QRTSAPAATPLVGDPAAEAVPFAPTPLQQ 2582

Query: 680  YIGQAAHDFEMANGTRHLIYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
                A H      G  HL      +  + +  T A   L     +    F  + +   Q 
Sbjct: 2583 AYWIARHQAGSDGGGSHLYQEWEIARLDADRLTHAWNRLIVRHGMLRARFDGDGQLSVQP 2642

Query: 738  YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
               +             ++         +            + D         + +  + 
Sbjct: 2643 ARPYRIACRDLRDLDPARQAAVLLEWRERHAFAPLPLDGGPLFDLRVFRLSAEMDILVVK 2702

Query: 798  HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
                  D    G L     T            +I+               +       WR
Sbjct: 2703 VDFLIADAWSLGMLARECATLYRDPDAALPALDISFRDVLEHRRRHADPAIRDAARRYWR 2762

Query: 858  HLFHKI 863
                 +
Sbjct: 2763 ERLASL 2768


>gi|269126155|ref|YP_003299525.1| hypothetical protein Tcur_1918 [Thermomonospora curvata DSM 43183]
 gi|268311113|gb|ACY97487.1| hypothetical protein Tcur_1918 [Thermomonospora curvata DSM 43183]
          Length = 596

 Score = 38.4 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 53/493 (10%), Positives = 127/493 (25%), Gaps = 33/493 (6%)

Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                   G +    ++ L + +LDR   Q  +      ++ L    +E         L+
Sbjct: 3   HDRWAGHAGLRGDPAVIRLSASLLDRTDRQCADFAALKARTGLWPRIRERRR---HPPLE 59

Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589
                +  +       G   +    +  V   +           +       +    +  
Sbjct: 60  TFPLGLVMRALDAVEFGGRDLRQAAEEAVAANRTPVHPGVAVWVSHACRAYLRAAEWITD 119

Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649
           ++   G  +        + + R++   +       ++     G+ +  +  F  L +   
Sbjct: 120 ELEAEGIALA------PERLPRIVQSASAAELRMLTAWGRWYGSTDGTVREFRRLRMSRA 173

Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT-----RSLR 704
            +   P   A     +   ++  N+            D         +        R L 
Sbjct: 174 GDEHTPSTLALAFVTAAGRRAVGNVYQDVPVEVIDDADAPTRIRIVEVTLLEGVPPRVLL 233

Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764
           +++   +   +L+R+  L         ++ G   L+  +   +    PH           
Sbjct: 234 DDSPERVRRAYLERVRPLAQGVVLGGERRAGSDCLE-CKLRAHCEDLPHAPGLLGAEEAG 292

Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824
              RT+S +  +     P       + +L        D     RG   H  +    ++  
Sbjct: 293 THRRTWSVTTGRDYAVCPARA---HMRQLHLPAAAPGDDSAVRRGRAVHRWLEAAHRRGR 349

Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884
             +  ++     +  +       L        R        +           +    V 
Sbjct: 350 PCSPGDLPD--PEAAEPGPLAAELTAEEYRQARPYLLAHLATCPLAGPGRIDQVRPEPVV 407

Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK-----TGDNPKKETAQKLID-PQLS 938
                      + +    D +     G +    Y+     TG  P     +     PQL+
Sbjct: 408 AAFD---PVADVLVIAHPDLL-RRVDGRLV---YREQKTTTGAPPSGTPEEVFAQVPQLA 460

Query: 939 LEAAALKAGSFSQ 951
           L    +  G F +
Sbjct: 461 LAVLLIAHGVFGE 473


>gi|326781099|ref|ZP_08240364.1| Acyl-CoA oxidase [Streptomyces cf. griseus XylebKG-1]
 gi|326661432|gb|EGE46278.1| Acyl-CoA oxidase [Streptomyces cf. griseus XylebKG-1]
          Length = 685

 Score = 38.4 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 46/524 (8%), Positives = 101/524 (19%), Gaps = 24/524 (4%)

Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI-EADNEREEAISIAIALRMSLD 383
               + +    T++             +   +  + ++ +A +      +   AL    +
Sbjct: 38  RQEHRFWRRLLTTEPFRRPDGGTPDERLALSYHRLRILNDALDSGARLAADPRALAALHE 97

Query: 384 -ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442
                  AL T            L              L+     + L      +   ND
Sbjct: 98  WLGPVDPALTTVAGIHYNLFLGSLLDHDAGAPRDVSDFLALRRVGTFL---CTEVAHGND 154

Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502
             AI T   +   + GF                         ++  +  +L   A     
Sbjct: 155 AAAIETTATYDRERDGFVLHTPHAGAQKFMPNTSPAGGPKSGVVAAR--LLVDGADHGVF 212

Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
             +                 L   +   +   +T    +    G         L      
Sbjct: 213 LFLVPLTDAHRALPGVRVRRLPPRMGSPVDHCLTSFDRRFVPRG--------ALLAGQQG 264

Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622
            V  D                     +    + S     +      I     G  +    
Sbjct: 265 RVGDDGRFHSEVPNRRRRFLASIGRVTPGKLSMSACAVGSARVTLAIAVRYAGHRMISGS 324

Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682
                + +             +        +  +   +        + +     AE+ + 
Sbjct: 325 RAVGRIPVYAHRTHHGPLAGAMATVYAMSLLHRRALDRWESAPEADRGE-----AERLVA 379

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
            A          R +I     R      + +  +  L                       
Sbjct: 380 VAKGWITW--QARAVIVECRERCGAQGLLENNGMTELFTGIEGAITAEGDNLAVHAKAAA 437

Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802
             L   T     +   P    +       F+ ++ L               D +  +   
Sbjct: 438 EMLFSATAPEPAEDDGPGGLDDPAFLGRLFAAVEDLWFARARERMAAAPPGDPLGRWNAA 497

Query: 803 PDRTDRGTLFHNIIT--ELIKKRINKNTPEINHLMKQIIDSHFE 844
                RG   H      E   + +              +   F 
Sbjct: 498 SSAALRGVEAHACRQADEAYAEAVASLPEGAARQRLSELRRLFA 541


>gi|330985989|gb|EGH84092.1| clpB protein [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 864

 Score = 38.4 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 70/576 (12%), Positives = 147/576 (25%), Gaps = 43/576 (7%)

Query: 62  SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
              + +  +   +L       DV  ++F   L          S I+  +  A L+  W  
Sbjct: 40  DLLVALLERPDGMLARALLEADVAADEFAGFLRQPIE----QSAIRNPVFSAELVQ-WLQ 94

Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLAD-----IIDIIETEEKKWEDLHALKNEK 176
               I      ES +         +      AD     ++  I  E  +   L       
Sbjct: 95  DALLISNLDLGESLIDQAALILALLRNPSRYADRPYQPLLGRINIERFRDYALAQQSPGV 154

Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST 236
                  +   L   +   T++        PV  +   +R   + L +  K   I+ G  
Sbjct: 155 AKPALNQSESLLARFTHNLTQQ-AREGLLDPVLCRDDCLRQMVDILARRRKNNPIVVGEA 213

Query: 237 G---SIPATARLMSTVANHPNGA---IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290
           G   +       +  V          + L  LD  +  A  +   E    +        +
Sbjct: 214 GVGKTAVVEGLALRIVHGEVPDLLKNVELLSLDMGLLQAGASIKGEFERRLKGVIEEVQS 273

Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350
                +   +D          + G        +  +          +          K P
Sbjct: 274 S-LRPVILFIDEAHTLIGAGVQAGGSDAANLLKPALARGELRTIAATTWAEYRQYFEKDP 332

Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-----KKSALITADRNLARRVKLE 405
            + + F  V ++E     E+AI+I   L    + +        + +  A  +       +
Sbjct: 333 ALARRFQSVRVME--PTVEQAITILRGLAPLYERSHGVYLRDDAVVAAARLSARYLSGRQ 390

Query: 406 LTRFGINIDISA----GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-------L 454
           L    +++  +A     I L       +         +   F A+              L
Sbjct: 391 LPDKAVDLLDTACARVRIGLVAVPE-RLEHLRGELARQRRYFEALQRDATAGLSVDESLL 449

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514
                    +    + LE            ++ L+S + DR   Q        +   L  
Sbjct: 450 VTLVSDLSRVQSEADELEYRWANQLAAVKRLIGLRSQLADRKVQQAGEGSDSQYTHALEP 509

Query: 515 EDKELAVLLV----DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570
           E  E+   L+    D  L              S    + +S   +     +     +   
Sbjct: 510 ELTEVRQALIDTQVDERLVSFEVCPRLIAEVVSAWTGIPVSRLAQEHSERIDRFSSELRL 569

Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606
           ++      +  + +           +   A    ++
Sbjct: 570 RIRGQE--QAMQAIEKSVRASAAGLNTPGAPTGVFL 603


>gi|260597363|ref|YP_003209934.1| DNA helicase IV [Cronobacter turicensis z3032]
 gi|260216540|emb|CBA29752.1| Helicase IV [Cronobacter turicensis z3032]
          Length = 684

 Score = 38.4 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 44/390 (11%), Positives = 86/390 (22%), Gaps = 32/390 (8%)

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232
               +G  W     F    +  W    +E++  +           E     +  +  +  
Sbjct: 66  VVRLHGTEWAETQRFYHHLTTLWQAWSLEMSEVAAGVLN---AWQEKLRSSESQEKWLKR 122

Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292
             S     A  R +  +         +P           +   E    +  S      H 
Sbjct: 123 DESEALCHALRRALQALP--------VPTSRLEAFDNCRDAWRECQAWLADSEAKRLVHN 174

Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352
           Q       D +  +  D       S     ++  +              +      +   
Sbjct: 175 Q----AFTDAMLTRYADFFSHIESSPLNPSQARAVVNGEHSLLVLAGAGSGKTSVLVARA 230

Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412
                   LIE      E I +    R +  E +++         +  R    L    I 
Sbjct: 231 G------WLIERGEATAEQILLLAFGRQAAREMEERLLKRLHTDAITARTFHALALQII- 283

Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472
                G     T   S L +   A         +    +    +     K   +  N   
Sbjct: 284 -----GQGGRKTPRVSDLENDTTA-----RHELLLNAWREQCREKKAQAKGWRQWLNDEL 333

Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532
              +       D    K L                 Q+ +     E    L    ++ + 
Sbjct: 334 EWDVDDGDFWEDEALGKRLASRLDRWLGLMRMHGGSQAEMIAAAPEEVRELFQKRVKLMA 393

Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562
           PL+            +  S      +  L+
Sbjct: 394 PLLKAWKAALKAEEAVDFSGLIHQAINVLE 423


>gi|157867891|ref|XP_001682499.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68125953|emb|CAJ03854.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 875

 Score = 38.4 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 37/398 (9%), Positives = 84/398 (21%), Gaps = 24/398 (6%)

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
                       + +  L         +     +    A                 +   
Sbjct: 487 AAAPVSPTKAEAVPRRSLFADELDATQVVDPTASSLSAAAPRTAFMATENGACDAPVHVG 546

Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
           A Q          +R  +   +    L+  +      +                      
Sbjct: 547 ALQAELAAQSAAVAR-LQRSLQAHESLLIELADARADVRGLHATLAERNEQCEEWRSACS 605

Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
                  +   +H ++     E   +   +    +        A    +++ + +    E
Sbjct: 606 QAEQRATMLRHQHERMLAEQQERLRRAHHAELEAVQAAFEEYDARMSAFLEQLQQDHREE 665

Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676
            V+ + E+ + L  L   + +          G  EG      A+    +           
Sbjct: 666 AVRWQRERRALLLQLHEQQRQQQE------MGDVEGHRRVRAAEVAARAHYEAQRRRAPA 719

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
            + Y  ++ H       +       S+  +   +  S W + L      D       R  
Sbjct: 720 PQVYQRESPHAQRQRQSS---AVVASVVHSPRDSGTSSWRRPLASSAECDLASAAWSRAD 776

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEA--------------QPRTYSFSEIKQLINDP 782
                   L               P                       +      LI  P
Sbjct: 777 VNSPSDSLLSQRPPPRQPPSHATSPFSAHQLMNGNPDVDEEVNHVHPAARHGTAALIRRP 836

Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
           ++ +   +      P   + PD  D GT  + +     
Sbjct: 837 HSYFQTHLEAPPPYPWDCRVPDAHDVGTGAYTLSRRSY 874


>gi|320103773|ref|YP_004179364.1| tetratricopeptide repeat-containing protein [Isosphaera pallida ATCC
            43644]
 gi|319751055|gb|ADV62815.1| Tetratricopeptide TPR_1 repeat-containing protein [Isosphaera pallida
            ATCC 43644]
          Length = 1626

 Score = 38.4 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 69/668 (10%), Positives = 170/668 (25%), Gaps = 35/668 (5%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A++         + +  L         + P +   LA  +  I+   E  +   E L  L
Sbjct: 756  AQIDAYALMGDKESLAALKRLVGEVSGLPPESRRPLASRILQILLASEGADAASEALEQL 815

Query: 173  KNEKYG-----------MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221
                                    + L      +       +  + +     LM    + 
Sbjct: 816  AQADPDNPELMRFDLELAMARRDEEALSRLRDQFRRVQGPDSREASLADAARLMLRHIQA 875

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
            + +   GP  +A ++   PA A     +         L          +W  + + +   
Sbjct: 876  VNRSQTGPTPLAENSAPPPADAASSPELTQARAILEKLARSQPD-WYTVWLFLGDLAVLE 934

Query: 282  TSSNTTYSTHPQYSLAKLLDFLDIKRE---------DVKRLGNVSNEMYGRSMVISKSFL 332
              S+   + H + +L    D L   R            K L  +  ++  +  +      
Sbjct: 935  RKSDEAIA-HGRKALELAPDNLRAGRFLANQYALAGRWKDLDELIAQLETKIRLTDDLRA 993

Query: 333  PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALI 392
                  +R  ++   +  +     + +A +      E+A   +     ++   +K   L 
Sbjct: 994  MAAEVAIRRGNLQRAQDMSKALDDTSLAGLVTKARIEQA---SGQAINAIVTYRKALTLY 1050

Query: 393  TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS-ILTSLLNAIFKLNDFMAIATLVK 451
                   R  + E+      + +      +    +  ++  +   +              
Sbjct: 1051 RKLLPEQRAAQAEIASEIYPLLVEQLRVTNAAPEARALMRQIERDLPDPVLREFTLARCH 1110

Query: 452  HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511
            H L ++   +    +          R       +   +  +    A  +    + +  + 
Sbjct: 1111 HVLEEYDQAQALYDKVLAQRPEF-GRALICRAILGANRRQLDQAEADLRRTLAIANLPAA 1169

Query: 512  LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571
            +  E +     L+  I     P    +  K     +L + +  +        +     + 
Sbjct: 1170 IQIEARRKLAELI-LIGPSSDPAKLAEALKLIEANSLILGETLEDKRLRSIGLIRLPDQV 1228

Query: 572  LPN---LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628
                  L      + L  +   ++      + +  +   + T+ ++     P   + +  
Sbjct: 1229 PAAIALLEEIARLEPLKPIERFLLALAYEARCDWPKARPMFTQWLNDRDAVPAQLEIAAR 1288

Query: 629  FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688
              L   +  L +     L     G+  +         + +Q+ L     +        D 
Sbjct: 1289 VFLDRKDRELASIALSRLTEPQPGMSSETPPAPSPRIKALQARLAHLKGDARTATTQLDQ 1348

Query: 689  EMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747
                     L         N P  A   L+R               RGQ      R+   
Sbjct: 1349 LEKTRALPDLELAALWESINQPERAESLLRR---AAQARDATGPLARGQLAGFLARRGRA 1405

Query: 748  TTKQPHYK 755
                   K
Sbjct: 1406 AEALERLK 1413


>gi|161615424|ref|YP_001589389.1| exonuclease subunit SbcC [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161364788|gb|ABX68556.1| hypothetical protein SPAB_03195 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 1046

 Score = 38.4 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 46/442 (10%), Positives = 102/442 (23%), Gaps = 34/442 (7%)

Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234
            +    W    +  +   +                     +RA A               
Sbjct: 290 RQLRPHWERIQEQTRAVERVRQHSDEVNARLQSAYRLRQRIRACAHRQFTQLN------- 342

Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
                 AT + + T     +G  V                         +  T  +H + 
Sbjct: 343 ------ATGQRLKTWLAEHDGIRVW----------------RSELAGWRALLTQQSHDRA 380

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            L++    L         L  ++ ++  +++  +++              L+ +I   QK
Sbjct: 381 QLSQWQQQLLSDTRQRDALPPLTLDLTPQALAEARALHTRQRPLRHRLAALQGQILPKQK 440

Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
             + +    A + +E+A      L       K K+  +   R +  +             
Sbjct: 441 RQAQLQAAIARHHQEQAQY-TQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAH 499

Query: 415 ISAGIP----LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
           + +G P     STT  +      L          A+   VK    +       L      
Sbjct: 500 LQSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQ 559

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
           L+           +   L        AT           +      +E    L     + 
Sbjct: 560 LQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQLSQRH 619

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                     +        I+         L    L          +  E    + ++ +
Sbjct: 620 ALQTQIAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAPEDEASWLNERADEAKIWQQ 679

Query: 591 IIETGSCIKANAIEWIDIITRL 612
                + ++        ++  L
Sbjct: 680 RHTEFADLQMQIDRLAPLLETL 701


>gi|313497883|gb|ADR59249.1| Chromosome segregation protein SMC [Pseudomonas putida BIRD-1]
          Length = 1162

 Score = 38.4 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 55/591 (9%), Positives = 152/591 (25%), Gaps = 19/591 (3%)

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
           +   L +L      +     K +     L      A  + LA+ LA     +  EE +  
Sbjct: 401 QQARLQQLETSLERQAERQRKLVEEREQLGSDPQDAAMLELAEQLAS--SEMLLEELQLC 458

Query: 168 DLHALKNEKYGMWWLLAADFLKIA----SKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
           +   ++  +     L  A   +       +    RL  L A      +     A+  H  
Sbjct: 459 EEQVIERLESAREQLQQATQAQQQAQGDLQRLGGRLASLEALQQAALESGAGAAQWLHGQ 518

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
              + P +  G          + + +     GA +   L        +  + +    +  
Sbjct: 519 GLEQQPRLAEGLRVEPGWELAVETVL-----GADLQAVLVEDFNDLDFAGLEQGELRLLL 573

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
           +    +T P   L K+   +D+     +                        + D     
Sbjct: 574 AVGAGATLPGSLLEKVEGRIDLAPWLGQVRPVEDLVQALEQRGALGEGQSLVSRDGYWVG 633

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
               ++    +    V  +    E E      +    +L++  ++   +   +      +
Sbjct: 634 RHFLRVRRGGEAEGGV--LARGQEIERLGQEQLEQEAALEQLDQQLQALREQQLDLEEQR 691

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
            +L R   + +   G   ++   S           +          ++   A        
Sbjct: 692 EQLRRRTQDENRLHGELKASLSASRA--RAEQVELRRRRLQEELGELEEQRALEHEQLGE 749

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                     +  +  +    +M  +  + + +   +         +             
Sbjct: 750 ARLLLQEALELMAQDTEQREQLMARRDTLRESLDRVRQEARQHKDHAHQLAVRLGSLRAQ 809

Query: 524 VDHILQCITPLV--TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            D   Q +  L     +  +     +L++ +           +     R++         
Sbjct: 810 HDSTRQALERLEQQAARLTERQEQLSLNLEEGEAPQEELRLKLEELLERRMSVDEEMRLA 869

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
           +       + +      +  A +   ++   ++   ++ +        +   L +   + 
Sbjct: 870 RLHMDEADRELRDAEKRRTQAEQQAQLLRGQLEQLRLECQGLDVRRKTLQEQLLADGYDL 929

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEM 690
             ++     E        +   L   +Q    +NL   E+Y  Q+     +
Sbjct: 930 QGVLATLEAEASEQGTEQELEQLEARIQRLGAINLAAIEEYEQQSERKRYL 980


>gi|310822330|ref|YP_003954688.1| serine/threonine protein kinase [Stigmatella aurantiaca DW4/3-1]
 gi|309395402|gb|ADO72861.1| serine/threonine protein kinase [Stigmatella aurantiaca DW4/3-1]
          Length = 1319

 Score = 38.4 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 83/773 (10%), Positives = 177/773 (22%), Gaps = 35/773 (4%)

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH---ALKNEKYGMWWLLAADFLKIAS 192
           L LP+     + L   LA  +     +     DL    AL  E  G   +   DF  +A 
Sbjct: 180 LPLPVPWRRVLTLGVGLARGLAAAHRQGVLHRDLKPSNALVTEDGG---VKLLDF-GLAE 235

Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252
           ++        ++   VG +  +     E      +  +   G          L       
Sbjct: 236 RFGPGMASPSSSLHLVGTRPYMAPELLERAPASPRSDLYALGLVLYELCLGELPRGPVRG 295

Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312
             G     G    I       I              +     +L +L             
Sbjct: 296 LEGVASRAGG-PEIDPDFTALIARCLAPDPLERFASAEALCEALERLERISAPAPLSASN 354

Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372
                         +         + +         +          +L  A        
Sbjct: 355 PYRGLAPFEAEHRALFFGRDADIHAVLERLRYRPLVLVAGDSGTGKSSLCRAGVLPRMDA 414

Query: 373 SIAIALRM----SLDENKKKS-ALITADRNLARRVKLELTRFGINIDISAGIPLSTTL-H 426
                 R     +L+  ++   AL  A   +  R + EL     +     G  L  T   
Sbjct: 415 VTLGGARERTTVTLEPGRRPLDALAAALAPVLGRKESELVTSLADATAWLGRTLRETHQE 474

Query: 427 SSILTSLLN------AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480
              L   ++       + +       + L+             L+   + L  +      
Sbjct: 475 GRGLLLFVDQLEELITLSEPVQAAHFSRLLGELALPSRGVRVLLAVRGDFLTRLCALPGL 534

Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540
                  L  L        +     P     +  E  EL   LV+     +  L   +  
Sbjct: 535 GDEAERALYILRPMSPEGVREAIVGPARSRGVVFESGELVQTLVESAAHGVGSLPPLQFA 594

Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600
                   + +         +    LDE   +         + L+ L  +  E    +  
Sbjct: 595 LAELWERRNPAH------GRITRAALDEMGGVAGALSRHADEVLARLSPQEREASRRLLL 648

Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
             +   +          +    + +S   +   +E RLL+  T       E       A 
Sbjct: 649 QLVT-EEGTRIERGEAELAEPSDAASRAALRALVEGRLLHTRTTGGQPRCELAHDSLIAS 707

Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720
              L   +   +  +   K +  A+ ++E     +  ++ R           S    R  
Sbjct: 708 WGTLRGWLDDSIGHRAVRKRVVAASMEWERLMRAKEALWGRRQLTETHLLEPSSLGPRER 767

Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
                      ++R    L     L          R + +        T +    + L  
Sbjct: 768 AFLAASRRAVTRQRWGRRLAVLAILLSVAASYGGLRLQAYFEDARFVATQAGLAREALTA 827

Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLF------HNIITELIKKRINKNTPEIN-- 832
                      + + +  F   P  +             N       + +          
Sbjct: 828 GRALAQQASARREEALALFDGRPSPSAGPETLPGLHGRRNAAERRWTEALALREQANEVY 887

Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
               Q ++   +++        +   + ++         ++ +       +  
Sbjct: 888 ARTNQFLEKALDRDRGHADTRRLIAEVTYERILLAERFHQRREREDWVQRLEQ 940


>gi|284047228|ref|YP_003397568.1| DEAD/H associated domain protein [Conexibacter woesei DSM 14684]
 gi|283951449|gb|ADB54193.1| DEAD/H associated domain protein [Conexibacter woesei DSM 14684]
          Length = 1480

 Score = 38.4 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 63/585 (10%), Positives = 134/585 (22%), Gaps = 31/585 (5%)

Query: 164  KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
             + ++L      +     L  A F + A +            +P+  Q    +   E   
Sbjct: 716  IEPDELEDAVVAELASSALFGARFRENAGRALLIPRAYPGKRTPLWQQRLKSQTLLEVAK 775

Query: 224  KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
            +  + PII+             +  V + P    +L  L     + +       S   +S
Sbjct: 776  RYGEFPIIL-------ETYRECLRDVLDLPGLHELLTQLQRRELSIVEVETATASPFASS 828

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
                Y     Y               + R              +  +       D     
Sbjct: 829  LLFDYVATYMYEGDTPNAERRAAALSLDRDLLRELLGQEELRDLIDADALDQVEDDLQHR 888

Query: 344  ILENKIPNIQKCFSDVALIEADNEREEAISI---AIALRMSLDENKKKSALITADRNLAR 400
                +     +    +  +      E A  +     A         ++ A++       R
Sbjct: 889  SERTRASTRDELHDVLRRVGDLTAAEAAQRVVPGVDAAAALDALASERRAVLLRIGGEQR 948

Query: 401  RVKLELT---RFGINIDISAGIP---LSTTL--HSSILTSLLNAIFKLNDFMAIATLVKH 452
             V        R  + +    G+P   L+        +L                      
Sbjct: 949  WVDAADAGMYRDALGVVPPGGLPEAFLADVPDALVRLLRRYAQTHGPFTTEEPRLRFGVD 1008

Query: 453  PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS-- 510
            P       E+     +  L    + G +   +   L+ L    +A  +        ++  
Sbjct: 1009 PTPALRALERDGELVQGELRPGGVSGTREWCETNVLRRLRRASLAVLRREIEPADQRALA 1068

Query: 511  -----RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
                     +        +D + + + PL       ++    +        + T +  +C
Sbjct: 1069 SFLPSWQGVDKHPPGGAGIDRLREQLVPLQGLALTPSTWETEVLPRRVGAYSATWMDQLC 1128

Query: 566  LDEHRKL--PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                            +G+            G    A      D          +     
Sbjct: 1129 ASGELVWVGAGALGRRDGRVALYFRDDAPLIGPPPGAGRAPAHDTPDHEAVRARLAQGSC 1188

Query: 624  KSSTLFILGTLESRLLN---FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
              S L +  +L    +    +D    G +    +    A    L+R  +  +        
Sbjct: 1189 FFSDLLVDLSLAPEAMQDALWDLAWAGEVTNDAFAPLRAPRLTLARAQRRAMQRSGRSTG 1248

Query: 681  IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725
               +      A        T  L +   P   S   + L  L   
Sbjct: 1249 RFSSRRGAGRAEVQGRWSLTAPLFDA-APADPSARRRALAELLLE 1292


>gi|330895541|gb|EGH27851.1| ATP-dependent helicase HrpB [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 844

 Score = 38.4 bits (87), Expect = 7.5,   Method: Composition-based stats.
 Identities = 32/380 (8%), Positives = 88/380 (23%), Gaps = 10/380 (2%)

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
           + + +         +        R+S             +   +   +  +   +     
Sbjct: 294 IDAGLARVPRFDPGSGMTRLETQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAY 353

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +              +          +W +       +    ++     +     +   
Sbjct: 354 GAAEILQADLAGLALQLARWGVTPAQLVWLDVPPAAAYAQAQDLLVRLEALNNQPGQPPA 413

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
           +         +      +  L     L    L  D   L G  + +       +  L+ +
Sbjct: 414 LTPHGQAMAELPAHPRIAHLLLRGHALGLGELACDVAALLGERDILRGAGADLHSRLTLL 473

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
             ++   + A+  + +A       +         +          SRWL  LL L   D 
Sbjct: 474 AGTERAARGAQGGVQRAR----QLSRQYRGYLRGAANSPVSDPDHSRWLGALLALAYPDR 529

Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
               ++ G               +      +P+  +          E +  +   +    
Sbjct: 530 VAQQRRAGGAEYRLANGRAALFAEADALMKQPWLVIADLGSRQGQREERIYLAAEFDPAL 589

Query: 788 -RRILKLDFIPHFKKDPDRTD---RGTLFHNIITELIKKRINKNTPEI--NHLMKQIIDS 841
              +L    I   + D D  +   R      +   +I +       E   +H +  ++  
Sbjct: 590 FDSVLAEQVISVDQIDWDEREGVFRAERQRKVGELIISREPLTGLDEATRSHALLALVRR 649

Query: 842 HFEKENLPPHIDIIWRHLFH 861
              +          W+    
Sbjct: 650 KGLELLPWTPELRQWQARVA 669


>gi|301754837|ref|XP_002913297.1| PREDICTED: spectrin beta chain, brain 4-like [Ailuropoda melanoleuca]
          Length = 3649

 Score = 38.4 bits (87), Expect = 7.5,   Method: Composition-based stats.
 Identities = 55/595 (9%), Positives = 130/595 (21%), Gaps = 47/595 (7%)

Query: 297  AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356
             + L  L    ++++           R    +              + LE K+    +  
Sbjct: 2650 RERLRELGELWDELQANS-QRKAATLRDACKALHLRRSVEELESWLEALEVKLRAPVEDQ 2708

Query: 357  SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416
                L E    + E  +              ++ ++T + +   +      R  +    S
Sbjct: 2709 DQPGLDELLGAQGELEAAVAGQARQAQWLLGQARVLTGEGHCLTQDVEAQARQLLPRFES 2768

Query: 417  AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
               PL     +    S L   F+  D        K PLA           A   L+    
Sbjct: 2769 LREPLQERRAALQARSRLLEFFRDVDEEMAWVQEKLPLA-TTQDCGQSLSAVRHLQEKHQ 2827

Query: 477  RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
               +       L   V+          H+         +  E AV  +            
Sbjct: 2828 NLEREMSSREALTQAVVVAGRQLVQAGHLAAGGVATRVQQLESAVGCLRA-----EATRR 2882

Query: 537  YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
                + +      +++  +      +  C  +          E  +              
Sbjct: 2883 RLQLQQAREAQQFLTELLEAESWLEERGCDLDIEDKGQ--SAEATRAFLRQLEATRRDLE 2940

Query: 597  CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656
              +            L                           +   L        V   
Sbjct: 2941 AFRTRIERLQQTAAVLES--------------------RQNPESARVLARMRAVREVHSG 2980

Query: 657  NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716
               +     + ++  L L   ++              T         ++      A   L
Sbjct: 2981 LLQRAEGRGQGLREQLKLHQLDREALLLETWLASKVATAE------SQDLGQDLEAVEML 3034

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776
            +        +     + + Q   +    L+ T  +   +       +EA       +   
Sbjct: 3035 EEKFDAFRREVQSLGQAKVQALRELAGSLERTAPRCALQIQAQRSRIEATWGRLDRAI-- 3092

Query: 777  QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI---------KKRINKN 827
                      AR +   +      +   +     +  +I    +          +R+  +
Sbjct: 3093 -KARTQSLATAREVQGFEQAAAELQGWMQEKAALVVRDICEHSLSSVQTLQQQHRRLEWH 3151

Query: 828  TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
               +   + ++         L P           K+  ++   E K Q    ++ 
Sbjct: 3152 LAAVEKEVARVRTEACRLGQLHPVAWEGLCEQLAKVEEAWAALEVKAQERGRQLE 3206


>gi|256378396|ref|YP_003102056.1| acyl transferase [Actinosynnema mirum DSM 43827]
 gi|255922699|gb|ACU38210.1| Acyl transferase [Actinosynnema mirum DSM 43827]
          Length = 3208

 Score = 38.4 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 31/315 (9%), Positives = 81/315 (25%), Gaps = 6/315 (1%)

Query: 437  IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
            +       A      H         +       +  +++      +     +  L+L+ +
Sbjct: 1298 LRGPTTTGATDHPALHQAIHALRAGECELALVGSATVLSDPPPAGATPTEHVVVLLLEPL 1357

Query: 497  ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556
            +  + + H     +  +       +  +  +L           +++       +S     
Sbjct: 1358 SAARRHDHPVRGTTDTTTTTTTDLLDALKSVLSQPATEWPPTRSRSGAVVPWPLSAAEPA 1417

Query: 557  TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616
             +       LD   + P++   + G TL++  + +      + A    +   ++ L    
Sbjct: 1418 ALRARARDLLDLLDRTPDVDPVDVGFTLATGRATLPHRAVLVAATPDRFRAELSALAGRA 1477

Query: 617  TVKPKIEKSSTLFILGTLESRLLNFD------TLILGGLNEGVWPKNTAKNPFLSRVMQS 670
            T  P   +S      G     L   D       +    + +         +  L+ V++ 
Sbjct: 1478 TDAPATPRSPVFTFPGHPARHLTPVDDLLADSPVFRDRIADCERALAPHVDWSLTAVLRG 1537

Query: 671  DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
            D      E+        F +A     +     +            +    V G     D 
Sbjct: 1538 DPGAPPPERTDVAQPAQFAVAVALAEVWRAHGVEPAAAVGHGPGEIAAAHVAGALSLADA 1597

Query: 731  LKKRGQCYLDWTRKL 745
             +            L
Sbjct: 1598 ARVVAVRSRLLHEHL 1612


>gi|282952162|emb|CBA63680.1| nonribosomal peptide synthetase NRPS [Streptomyces sp. ATCC 700974]
          Length = 2468

 Score = 38.4 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 82/693 (11%), Positives = 164/693 (23%), Gaps = 56/693 (8%)

Query: 12   APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71
            A  + F      +LL   L    R     P  +A V                        
Sbjct: 1068 AADAGFLDLGGHSLLAARLAARIREHFAVPFSIADVF------------------RHSTP 1109

Query: 72   STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131
            + +   ++              +      P     QRL  L RL                
Sbjct: 1110 TALAAQVRGRSGAAIAAVPLSPVPRTGPLPLSPAQQRLWFLHRL-------EGPSPTYNI 1162

Query: 132  PESPLSLPISPANAIWLAKNLADIIDIIETEE-KKWEDLHALKNEKYGMWWLLAADFLKI 190
            P           +A+ LA  L D++D  ET         +    +       L      +
Sbjct: 1163 PLVLSVNGPLDRDALQLA--LRDLVDRHETLRTVYPPTDNGPGADGDSAHHQLILPPGHV 1220

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250
            AS+        L+ + P       +R   +   +     ++ +           L     
Sbjct: 1221 ASR------PVLHLAEPGSDLTEAVRHCFDLATEPPLRTVLFSDGPDHHTLLLLLHHIAG 1274

Query: 251  NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310
            +  +   +   L     TA       +   +      ++   Q  L    +   +    +
Sbjct: 1275 DGASTTPLARDLATAY-TARLAGRAPEFAPLAGQYVDHAARLQLLLGSPAEPTALAEAQL 1333

Query: 311  KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370
                +    +  +  + +    PP  +   +T          +          A      
Sbjct: 1334 AHWRDALAGLPDQLELPTDRPRPPVATSAGDTVPFALDATAHEALRRLARAHGATVFMTV 1393

Query: 371  AISIAIALRMSLDENKKKSALITADRNLARRVKLEL---------TRFGINIDISAGIPL 421
               +A  L            L T            L          R   + D + G  L
Sbjct: 1394 QAGLAALLTRHG--CGTDIPLGTPVAGRDDNASAGLVGFFTNTVVLRTDTSGDPAFGDLL 1451

Query: 422  STTLHSSILTSLLNAIFKLNDFMAI---ATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
                 +++     +A+   +   A+    +L +HPL +     + ++    AL   A   
Sbjct: 1452 DRVRATTLAAYEHDALPFDHLVEALNPPRSLSRHPLFQVMLAWQSIADGPVALGPEATAR 1511

Query: 479  NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                        L L+              + R    D+  A  L D + +    L    
Sbjct: 1512 LTAVPSGTAKFDLTLN-AGELPGGGIGGFLEFRTDLFDRSTAQALADRLSRL---LAAAA 1567

Query: 539  TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE-GKTLSSLFSKIIETGSC 597
                +  G L +    ++    ++   +    +   L   E  G        ++  +   
Sbjct: 1568 ERPETPVGLLPVLGEDEVHRALVEANGVPSGDRPAPLTLAEVYGGAARRHPERVAVSCEG 1627

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                  E       L      +     S     L      +     + L G        +
Sbjct: 1628 DALTYAELSSRAQSLARLLADRNIGPGSIVALALPRSLDLVAGLLAVSLAGAAYLPMDPD 1687

Query: 658  TAKNPF--LSRVMQSDLNLKTAEKYIGQAAHDF 688
               +    +    +    +  A       AHD 
Sbjct: 1688 YPADRLAYMLDDARPAALITDAATAGRLPAHDL 1720


>gi|58426760|gb|AAW75797.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1414

 Score = 38.4 bits (87), Expect = 7.7,   Method: Composition-based stats.
 Identities = 57/670 (8%), Positives = 162/670 (24%), Gaps = 46/670 (6%)

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
                +R          K      GS  +  A   L  T A               + + 
Sbjct: 314 RLENALRDARARGDALAKAVFFGRGSAQATEAEQALARTNAQIDQLQSAYAQARDALQSD 373

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             ++ T    + T ++   +   Q  +  L   L    + +      +      +  + +
Sbjct: 374 QASSSTSAPASRTLASHLAAEQSQ-EIQALRTQLARDEQMLSLQSVHAERCQRNARRLQE 432

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
             +  + +  +           + +    V+ +EA +   +      A+  +  ++    
Sbjct: 433 RLVQVEATLKQAQHSSRVNTKELWQQDHTVSALEAADGDMQ-----RAVETAAAQSPADE 487

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A    D ++A  +   L             P+S  +  +    L                
Sbjct: 488 ARRAPDDSVAEAMAALLD-ALPGFREDTIGPMSRQVLRTWADGLHR-------------- 532

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
                 +         +  +AL +     +  S       + VL R+   +    +P  Q
Sbjct: 533 ------RSAAFGTDALQPVDALNIALQALSIASQSDATTAANVLQRLGEVQLRELIPPPQ 586

Query: 510 SRLSEEDKELAVLLVDHILQCIT-----PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
              + E       +   +   ++      ++ +   +  T       +  ++ +     +
Sbjct: 587 VSNAAEAVPPMEAVTTCVGLLVSVPRGMQVLLHMLREEPTSPAREWLEAAQVHLRASHRL 646

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
            L    +     +  + +  +            +++           + +G         
Sbjct: 647 ALTPDAEQAERAWLADAQMGARHAVHGATPLQGLQSATDAQRSAFHAIRNGYETTRAGSP 706

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
            + +     + ++         G      +          +         +  + +   A
Sbjct: 707 YARVNASLQMFAQWAVAGGQTRGKRALNPFNALKLGMKVGASEALPTAGRRANDAFREAA 766

Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
            H        RH+  T     +                           +   +     +
Sbjct: 767 GHLSNWLVARRHIQMTCGQLPSQDELAMQAL--------------AECVQWLPHEQSATE 812

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
           L +T K       +     ++   + S ++ +Q      A+ +  +          +   
Sbjct: 813 LIFTAKVLAEIEQRARELQDSVTASLSTTDARQPAACHPAIASAWVALRTSRMRLPETLR 872

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
              RG L H I              E+  + +          +   H     R    +  
Sbjct: 873 LIQRGLLDHAIQPNDTPAGAAPLDKELASVARNHFHQAVGNASRFLHEGDTSRVRSPRAL 932

Query: 865 HSFLEHEEKI 874
            + L +  + 
Sbjct: 933 FACLRNVMER 942


>gi|16763775|ref|NP_459390.1| exonuclease subunit SbcC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167992239|ref|ZP_02573337.1| exonuclease SbcC [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|16418898|gb|AAL19349.1| ATP-dependent dsDNA exonuclease [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205329493|gb|EDZ16257.1| exonuclease SbcC [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261245678|emb|CBG23474.1| exonuclease SbcC [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267992102|gb|ACY86987.1| exonuclease subunit SbcC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157007|emb|CBW16490.1| exonuclease SbcC [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911427|dbj|BAJ35401.1| exonuclease subunit SbcC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|323128711|gb|ADX16141.1| exonuclease subunit SbcC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332987343|gb|AEF06326.1| exonuclease subunit SbcC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 1046

 Score = 38.4 bits (87), Expect = 7.8,   Method: Composition-based stats.
 Identities = 46/442 (10%), Positives = 102/442 (23%), Gaps = 34/442 (7%)

Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234
            +    W    +  +   +                     +RA A               
Sbjct: 290 RQLRPHWERIQEQTRAVERVRQHSDEVNARLQSAYRLRQRIRACAHRQFTQLN------- 342

Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
                 AT + + T     +G  V                         +  T  +H + 
Sbjct: 343 ------ATGQRLKTWLAEHDGIRVW----------------RSELAGWRALLTQQSHDRA 380

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            L++    L         L  ++ ++  +++  +++              L+ +I   QK
Sbjct: 381 QLSQWQQQLLSDTRQRDALPPLTLDLTPQALAEARALHTRQRPLRHRLAALQGQILPKQK 440

Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
             + +    A + +E+A      L       K K+  +   R +  +             
Sbjct: 441 RQAQLQAAIARHHQEQAQY-TQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAH 499

Query: 415 ISAGIP----LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
           + +G P     STT  +      L          A+   VK    +       L      
Sbjct: 500 LQSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQ 559

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
           L+           +   L        AT           +      +E    L     + 
Sbjct: 560 LQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQLSQRH 619

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                     +        I+         L    L          +  E    + ++ +
Sbjct: 620 ALQTQIAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAPEDEASWLNERADEAKIWQQ 679

Query: 591 IIETGSCIKANAIEWIDIITRL 612
                + ++        ++  L
Sbjct: 680 RQTEFADLQMQIDRLAPLLETL 701


>gi|326317203|ref|YP_004234875.1| chromosome segregation protein SMC [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374039|gb|ADX46308.1| chromosome segregation protein SMC [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 1175

 Score = 38.4 bits (87), Expect = 7.8,   Method: Composition-based stats.
 Identities = 40/456 (8%), Positives = 108/456 (23%), Gaps = 23/456 (5%)

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           L      W+   +E    + +   +       E     T    + AG   + PA     S
Sbjct: 518 LDGLQGLWSRLHIEPGWENALEAALRERLGALEVGRLDTVRGFLGAGGQDAPPARLAFYS 577

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +                  A                       Q           + R
Sbjct: 578 APS---------AAGTSGTAPAAPRLADLLRVPEAGLRAVLEDWLQGCQTAATLDEALDR 628

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
               R G       G ++           S+         +I +++K     ALI     
Sbjct: 629 RTQLRPGEAIYVPGGHAVSAHGVSFYAQDSEQSGLLARAQEIEHLEKELRAQALI----- 683

Query: 368 REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
            EE+ +  +    +  +  ++      +   A+  + EL    + ++  A    + +   
Sbjct: 684 HEESRTALVRAEAAYADASQRLVTARREATEAQGRRHELQVESLRLNQLAEQARARSEQI 743

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE--KYLSRAKNALELVALRGNKNSYDI 485
               + + A        ++A+  +         +  +  ++  + +     R N+     
Sbjct: 744 GADLAEVEAQLADLQERSVASEARFEELDMQLADSQERHAQLGDRVIEAERRLNECREQQ 803

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
             L+    +   ++++        +R  +  +     L D   +    +    +      
Sbjct: 804 RALERQAQEATFSRRSLEARRAELARTIDTARAQVSSLEDERQRAQDEMGRLSSAAAQGG 863

Query: 546 GNLSIS-------DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
              ++                               L  E     L    +         
Sbjct: 864 LQQALDLKMEREKALAAQRSEYDDLTARLRASDERRLQLERALDPLRQRITDFQLKEQAA 923

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +    ++  +++          +  +   +   G  
Sbjct: 924 RLGLEQYTSLLSDAQADLDAVARSIEEGGVRAAGLQ 959


>gi|238029059|ref|YP_002913284.1| DNA polymerase III, alpha subunit [Burkholderia glumae BGR1]
 gi|237880636|gb|ACR32964.1| DNA polymerase III, alpha subunit [Burkholderia glumae BGR1]
          Length = 1049

 Score = 38.4 bits (87), Expect = 7.8,   Method: Composition-based stats.
 Identities = 65/598 (10%), Positives = 143/598 (23%), Gaps = 37/598 (6%)

Query: 107  QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166
            +    L   +  +R +               +    A A     + AD++          
Sbjct: 418  RDRAALTAAVSTYRPRGALREAGKALGVDPIIVDRVAKAHHWFDSKADLLARFAEAGLDV 477

Query: 167  EDLHALKNEKYGMWWLLAADFLKIASKYWTERL-------VELNASSPVGYQIALMRAEA 219
            E             W   A  L    ++ ++          +L+   P+       R   
Sbjct: 478  EA-------PLNQQWAAFATALLGYPRHLSQHSGGFVISRTKLSRMVPIENAAMADRTII 530

Query: 220  EHLMK--GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI--- 274
            +         G + +      + +  R    + +   G             A +  +   
Sbjct: 531  QWDKDDIEALGILKVDILALGMLSMVRRALEMISEKRGEPFELQDIPPEDAATYAMLCEG 590

Query: 275  ---TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331
                       +  +            L+  + I R    + G V   +  R  +   +F
Sbjct: 591  DSMGVFQVESRAQMSMLPRLQPRCFYDLVIEVAIVRPGPVQGGMVHPFLRRRQGLEPVTF 650

Query: 332  LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI-SIAIALRMSLDENKKKSA 390
              PD        +            + +A   +  E ++   ++A   R    E      
Sbjct: 651  PSPDVEKALKRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRKGGLEPYHARL 710

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
            +         R   E     I      G P S     ++L      + +    + +A L+
Sbjct: 711  VEGMLARGYDRDFAEAIFAQIKGFGDYGFPESHAASFALLVYASAWLRRHEPGVFLAALL 770

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK----------SLVLDRIATQK 500
                  F  P + L  A+     +       S     L+           + L +    +
Sbjct: 771  NSQPMGFYTPSQLLQDARRRSVRILPVDVTISTWDSTLEGDTTAAPVRVGMSLIKGMRAE 830

Query: 501  NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
                +   +S     D              +  L      ++   GN   + W       
Sbjct: 831  AAARIELARSVRPFADVADLARRAALDRHDLQVLAAAGALRSLAGGNRRDALWLAAAAVP 890

Query: 561  LQNVCLDEHRKLPNLWFEEE--GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618
             +++     R        +   G+ L S +  +  T        +       RL+    +
Sbjct: 891  GRDLLRGTERDDAAPALPQASEGRELVSDYRSMGFTLGRHPLELLRARLRTDRLLPAAEL 950

Query: 619  KPKIEK--SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
                    +    I+   +        L +   +E            L +  +  L  
Sbjct: 951  AQLRNGQFARACGIVTVRQRPGTAKGVLFITLEDETGQTNVIIWPMLLEQYRREALGA 1008


>gi|91778589|ref|YP_553797.1| putative cyclic beta 1-2 glucan synthetase [Burkholderia xenovorans
            LB400]
 gi|91691249|gb|ABE34447.1| Putative Cyclic beta 1-2 glucan synthetase [Burkholderia xenovorans
            LB400]
          Length = 2901

 Score = 38.4 bits (87), Expect = 7.8,   Method: Composition-based stats.
 Identities = 45/512 (8%), Positives = 118/512 (23%), Gaps = 31/512 (6%)

Query: 374  IAIALRMSLDENKKKSAL--ITADRNLARRVKLELTRFGINIDISAGIP--LSTTLHSSI 429
            +      +L    +   L  +             L  + + +  +      +  T+   +
Sbjct: 802  VRRRPARALPATGRWKMLDNLRRTLVAPAAFMALLAGWTLPLPDALRWTCFVLATIAVPV 861

Query: 430  LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489
            L   L+A+        +    +  L      +            +A    +       + 
Sbjct: 862  LLPTLSALVPRWQRAHVKMTARS-LLGVWLADLR-LALARCAMSIAFIAQQTWSMSDAIG 919

Query: 490  SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549
              +   + T+++           +      A             L        +   + +
Sbjct: 920  RTLFRLLVTRRHLLEWTTAAEASARGRLTPASTYARMSGGLALALAASLAILLAARHSGN 979

Query: 550  ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609
               W       L  +         +L           + +   +           + +  
Sbjct: 980  FGAWVG-LPFVLSWLASPLLAYWSSLAPHPASD--LDVGAADAQQLRRHARRTWRYFETF 1036

Query: 610  TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669
                D        ++     I        L    L      E  W         L  V +
Sbjct: 1037 VTAADQMLPPDNFQEDPRPVIAHRTSPTNLGLYLLATVSAREFGWIGT------LDAVER 1090

Query: 670  SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729
             +  L T E+      H +            R L    + ++ S  L   L+  G     
Sbjct: 1091 LEATLATMERMPRYRGHFYNWY----DTQDLRPLDPKYVSSVDSGNLAGHLIALGNACRA 1146

Query: 730  NLKKRGQCYLDWT-----RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ-LINDPY 783
               +                L   ++    +R  P      +    + + ++  L     
Sbjct: 1147 WSAQPVDAQSAVAFTGIDDCLALLSESVGGERAGPQRAAALREFEQAAAALRTTLDGVKT 1206

Query: 784  AVYARRILKLDF------IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            A  A   L  +       +              +   +  +  +   +++T   +  +++
Sbjct: 1207 AAPANGTLGAEPAWPTVLLLAATVTNAARALVGIQPAVSGQPSQGGHDQDTLFWSDALER 1266

Query: 838  IIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869
             +  H           +  R  F ++  + L+
Sbjct: 1267 TLRGHCRDLACAAEGALALRERFARLIDATLQ 1298


>gi|205351707|ref|YP_002225508.1| exonuclease subunit SbcC [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271488|emb|CAR36306.1| exonuclease SbcC [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326626739|gb|EGE33082.1| exonuclease subunit SbcC [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 1046

 Score = 38.0 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 45/442 (10%), Positives = 102/442 (23%), Gaps = 34/442 (7%)

Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234
            +    W    +  +   +                     +RA A               
Sbjct: 290 RQLRPHWERIQEQTRAVERVRQHSDEVNARLQSAYRLRRRIRACAHRQFTQLN------- 342

Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
                 AT + + T     +G  +                         +  T  +H + 
Sbjct: 343 ------ATGQRLKTWLAEHDGIRIW----------------RSELAGWRALLTQQSHDRA 380

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            L++    L         L  ++ ++  +++  +++              L+ +I   QK
Sbjct: 381 QLSQWQQQLLSDTRQRDALPPLTLDLTPQALAEARALHTRQRPLRHRLAALQGQILPKQK 440

Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
             + +    A + +E+A      L       K K+  +   R +  +             
Sbjct: 441 RQAQLQAAIARHHQEQAQY-TQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAH 499

Query: 415 ISAGIP----LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
           + +G P     STT  +      L          A+   VK    +       L      
Sbjct: 500 LQSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQ 559

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
           L+           +   L        AT           +      +E    L     + 
Sbjct: 560 LQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQLSQRH 619

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                     +        I+         L    L          +  E    + ++ +
Sbjct: 620 ALQTQIAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAPEDEASWLNERADEAKIWQQ 679

Query: 591 IIETGSCIKANAIEWIDIITRL 612
                + ++        ++  L
Sbjct: 680 RQTEFADLQMQIDRLAPLLETL 701


>gi|317124581|ref|YP_004098693.1| hypothetical protein Intca_1451 [Intrasporangium calvum DSM 43043]
 gi|315588669|gb|ADU47966.1| hypothetical protein Intca_1451 [Intrasporangium calvum DSM 43043]
          Length = 1383

 Score = 38.0 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 68/843 (8%), Positives = 189/843 (22%), Gaps = 36/843 (4%)

Query: 82  GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141
           G +  ++  A++    +   P +  +    + +L+        + +  L           
Sbjct: 143 GPLSLQRLRAEVETDGHFFDPNATRRYREHVGQLLFGLPLDQYEDLLRLLYWLRQPQVGE 202

Query: 142 PANAIWLAKNLADIIDIIET-----EEKKWEDLHALKNEKYGMWWLLAA--DFLKIASKY 194
             +   LA+ L   +  I+          ++ L     +        AA   FL+    Y
Sbjct: 203 DIDPKRLAEQLVQALPQIDESALRSAGDTFDQLEEFGEQIDRQERAAAAIGSFLQSYRTY 262

Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254
               + E  A + V       RA  E           + G   +  A  R  S +A+   
Sbjct: 263 ARGVVAER-AQAVVDAADVERRARREVRRLERAVAETLDGLDRARAAQHRAESELADAAA 321

Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314
               L         A    + +  T                  ++ +      +    L 
Sbjct: 322 RITQLKAGPEARAQAQLLALDDHLTTRLQLADQAERRLVEQQQRVSEAQRRATDAAVDLV 381

Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV------------ALI 362
             + E   R+  +                          +    V             L+
Sbjct: 382 AATTEWVSRARTVRAEGADAGIVGPLARVAHLAIAEPDWRAPDSVVELRAALAAAPEELL 441

Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELT----RFGINIDISAG 418
           +  +    A +    +  +    +   +        + R +  L     R    +  +  
Sbjct: 442 DVRDRVGVARAAVKVVDAARARAEDLRSDAVRREEDSARAETTLAGRQARHDEAVTATMD 501

Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478
                    +    +  A+      ++ A L               + A+        R 
Sbjct: 502 ATEQFVAALTTWLEMTAAVPVPRPEISAAELGAFGAVVADAVAPVRAEAEQHRADARTRL 561

Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538
                D   +++   +  A +      P W+       + +       ++     +    
Sbjct: 562 AAAEGDQEQVRAERAEVAAERDPRPAPPVWRRDDRGALEAIGGAPFWRLVDFRDDIDAPT 621

Query: 539 TN--KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
               + +  G+  +  W       +          +     E  G++L+++         
Sbjct: 622 RAAIEAALEGSGLLDAWVTAEGRVVPEAEDAFLIDVSPEPQEGTGRSLAAVLRADSHLPG 681

Query: 597 CIKANAIEWIDIITRLIDGETVKPKI-----EKSSTLFILGTLESRLLNFDTLILGGLNE 651
            + ++ ++ +     L+D                             L+        +  
Sbjct: 682 AVPSDVVDAVLSRVGLVDDLRSGAAPDDDSLAGGPRADHTLAHVRIGLDGSWWTGPLVGR 741

Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711
               +            +S        +               +    T    +      
Sbjct: 742 TNKERAQFIGAAARDAERSRRLAALDGRLDELGRTIAVAGAQVQLHTATLQSLDAWHRAR 801

Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771
            S                 + +         R              +     +      +
Sbjct: 802 PSHEGLLTAWAAEQASATAVDEARAELAAAARLAQAARAAAAVAHDELVRLGQIHDLPIT 861

Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR-TDRGTLFHNIITELIKKRINKNTPE 830
              +        A+  +     D     ++D     +RG         L +     +  E
Sbjct: 862 AQGLHARDERLRAILDQTRDLDDRRSVLERDLAEWEERGRFAVAERERLDEA---ADDDE 918

Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889
                     +  ++        +        +++ +    + + +  + ++   + A  
Sbjct: 919 RARTEAATAAAELDELRASAGASVAELEQRLDELAKTRDRADAERREQVRQVEQLVRASA 978

Query: 890 AIE 892
            +E
Sbjct: 979 TLE 981


>gi|120611507|ref|YP_971185.1| chromosome segregation protein SMC [Acidovorax citrulli AAC00-1]
 gi|120589971|gb|ABM33411.1| chromosome segregation protein SMC [Acidovorax citrulli AAC00-1]
          Length = 1175

 Score = 38.0 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 40/456 (8%), Positives = 109/456 (23%), Gaps = 23/456 (5%)

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247
           L      W+   +E    + +   +       E     T    + AG   + PA     S
Sbjct: 518 LDGLQGLWSRLHIEPGWENALEAALRERLGALEVGRLDTVRGFLGAGGQDAPPARLAFYS 577

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
             +                 +A                       Q           + R
Sbjct: 578 APS---------AAGAPGTTSAAPRLADLLRVPEAGLRAVLEDWLQGCQTAATLDEALDR 628

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
               R G       G ++           S+         +I +++K     ALI     
Sbjct: 629 RSQLRPGEAIYVPGGHAVSAHGVSFYAQDSEQSGLLARAQEIEHLEKELRAQALI----- 683

Query: 368 REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
            EE+ +  +    +  +  ++      + + A+  + EL    + ++  A    + +   
Sbjct: 684 HEESRTALVRAEAAYADASQRLVAARREASEAQGRRHELQVESLRLNQLAEQARARSEQI 743

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE--KYLSRAKNALELVALRGNKNSYDI 485
               + + A        ++A+  +         +  +  ++  + +     R N+     
Sbjct: 744 GADLAEVEAQLADLQERSVASEARFEELDMQLADSQERHAQLGDRVIEAERRLNECREQQ 803

Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545
             L+    +   ++++        +R  +  +     L D   +    +    +      
Sbjct: 804 RALERQAQEATFSRRSLEARRAELARTIDTARTQVASLEDERQRAQDEMGRLSSAAAQGG 863

Query: 546 GNLSIS-------DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598
              ++                               L  E     L    +         
Sbjct: 864 LQQALELKMEREKALAAQRSEYDDLTARLRASDERRLQLERALDPLRQRITDFQLKEQAA 923

Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634
           +    ++  ++           +  +   +   G  
Sbjct: 924 RLGLEQYTSLLADAQADLDAVARSIEEGGVRAAGLQ 959


>gi|86606510|ref|YP_475273.1| hypothetical protein CYA_1860 [Synechococcus sp. JA-3-3Ab]
 gi|86555052|gb|ABD00010.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab]
          Length = 267

 Score = 38.0 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 37/170 (21%)

Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR-TDRGTLFHNIITELIKKRINKNT 828
            S S +  L   P       + +L +      + +    RG  FH ++    +    +  
Sbjct: 8   LSASALALLDYCPRLFCYVYLERLIWPAADAFEHEAEQQRGRQFHRLVESYSRGLQVEP- 66

Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888
                 +++ +   ++     PH     R                       +   +P  
Sbjct: 67  --RLSALEETVRQWWQVFLASPHAQPQGR-----------------------VLAELPLW 101

Query: 889 MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938
             IE  G  L    DR+ +   G + I D+KT         Q+  D QL+
Sbjct: 102 QRIE--GFKLMARLDRLVIAP-GSLHIVDWKT-------ERQRPPDEQLA 141


>gi|297300246|ref|XP_002805558.1| PREDICTED: plectin-1 isoform 3 [Macaca mulatta]
          Length = 4546

 Score = 38.0 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 66/790 (8%), Positives = 184/790 (23%), Gaps = 45/790 (5%)

Query: 92   DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
                   L    + +++  +LA      + +     K+L       +      A+   + 
Sbjct: 1355 RAEERERLAEVEAALEKQRQLAEAHAQAKAQAEREAKELQQRMQEEVVRREEAAVDAQQQ 1414

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA--DFLKIASKYWTERLVELNASSPVG 209
               I + ++              +            + +++          +   +    
Sbjct: 1415 KRSIQEELQXXXXXXXXXXGQARQAEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGEL 1474

Query: 210  YQIALMRAEAEHL------MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
              +     EAE                +   S     A A L   V      A       
Sbjct: 1475 QALRARAEEAEAQKRQAQEEAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREKQRAL 1534

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
              +   +     E    +  +    +   Q +L       +++ +  +           R
Sbjct: 1535 QAL-EELRLQAEEAERRLRQAEVERARQVQVALETAQRSAEVELQSKRASFAEKTAQLER 1593

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS------DVALIEADNEREEAISIAIA 377
            S+      +     +       + +    ++          +   EA   R +A  +A  
Sbjct: 1594 SLQEEHVAVAQLREEAERRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQ 1653

Query: 378  --LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              L  +  E +K+ A   A R      +    R     ++     L+       L +   
Sbjct: 1654 KSLAQAEAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQE 1713

Query: 436  AIFKLNDFMA---IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
             I    +         L++  LA+        ++ +  LE    +         +++ L+
Sbjct: 1714 LIRLRAETEQGEQQRQLLEEELARLQREAAAATQKRQELEAELAKVRA------EMEVLL 1767

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
              +   ++ +        +  E +      L +     +  L      +       +   
Sbjct: 1768 ASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAA-RLRALAEEAKRQRQLAEEDAARQ 1826

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              +      + +             E   K   +   ++                     
Sbjct: 1827 RAEAERVLAEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRR-------- 1878

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            ++ +  + K +    L  L       L     ++                  +   ++  
Sbjct: 1879 LEEQAAQHKADIEERLAQLRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 1938

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                 E  +G+   + E    ++      + R+  +     +  +              +
Sbjct: 1939 GKAELELELGRIRSNAEDTLRSKEQAELEAARQRQLAAEEEQRRREAEERVQKSLAAEEE 1998

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
               Q             K    +R +     E+           QL  +      +   K
Sbjct: 1999 AARQRKAALEEVERLKAKVEEARRLRERAEQESA-------RQLQLAQEAAQKRLQAEEK 2051

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                   +K+ +         +++  L  +              ++     E+E      
Sbjct: 2052 AHAFAVQQKEQELQQTLQQEQSVLDRLRSEAEAARRAAEEAEEARV---QAEREAAQSRR 2108

Query: 853  DIIWRHLFHK 862
             +       +
Sbjct: 2109 QVEEAERLKQ 2118


>gi|284042115|ref|YP_003392455.1| ATP-dependent chaperone ClpB [Conexibacter woesei DSM 14684]
 gi|283946336|gb|ADB49080.1| ATP-dependent chaperone ClpB [Conexibacter woesei DSM 14684]
          Length = 892

 Score = 38.0 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 63/620 (10%), Positives = 141/620 (22%), Gaps = 56/620 (9%)

Query: 64  FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI----------QRLLELA 113
            + +  +   ++P +    DV   +    L       P VS            +RL EL 
Sbjct: 35  LLALIAQPDGLVPRLLLRADVDAGRLAEQLEAELRRRPRVSGPGSAPGQVYVSRRLSELL 94

Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173
            +      +L D    +       L      A         +++         + L  + 
Sbjct: 95  DVAEQEAQRLKDDYVSVEHVLVAFLRAGGDTAAG------RLLNE---SGLTTDRLLEIL 145

Query: 174 NEKYGMWWLLAADFLKIASKYWTE------RLVELNASSPVGYQIALMRAEAEHLMKGTK 227
             +      + +   + A +   +               PV  +   +R   + L + TK
Sbjct: 146 T-EVRGAQRVTSAMPEGAYEALEKYGRDLVEEARSGRLDPVIGRDGEIRRVIQILSRKTK 204

Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
              ++ G  G         + V       +     +      ++                
Sbjct: 205 SNPVLVGDPGVGKT-----AIVEGLAQRIVRQDVPEGLKDKTVFALDMGSLVAGAKYRGE 259

Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
           +                        L  V        + I +              +   
Sbjct: 260 FEE-----------------RLKAVLTEVKAAEGRILLFIDELHTVVGAGGGSEGAMDAG 302

Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELT 407
            +        ++  I A    E    I      +L+   +   +   D          L 
Sbjct: 303 NMLKPMLARGELHCIGATTLDEYRRHIERD--AALERRFQPVVI---DEPSVEDTISILR 357

Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467
                 ++  G+ +      +  T     I           LV    A        L + 
Sbjct: 358 GLRERFEVHHGVRIQDAALVAAATLSHRYITDRFLPDKAIDLVDEACAVVRTEIDSLPQE 417

Query: 468 KNALELVALRGNKNSYDIM-DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526
            + +     R       +  +      DR+ T +        Q+       E     +  
Sbjct: 418 LDEITRRVTRLEIEEAALQKEDDRASRDRLQTLRKELADLRAQADAMTAQWEAERQAIHR 477

Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586
           +      L   +           ++   +L    L  +      +   L  ++ G  L  
Sbjct: 478 LQHLRRELEEVRREAEDAERGYDLNRAAELRHGKLPQLEQRLRAEEERLSTKQHGARLLR 537

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646
                 E    +       +  +      + ++        +  +G  E+  L  D +I 
Sbjct: 538 EEVTDDEIAEVVARWTGIPVARLMEGEREKLLRLDQILHERV--IGQDEAVQLVADAVIR 595

Query: 647 GGLNEGVWPKNTAKNPFLSR 666
                    +      FL  
Sbjct: 596 ARAGVKDPRRPIGSFIFLGP 615


>gi|268316128|ref|YP_003289847.1| type II secretion system protein E [Rhodothermus marinus DSM 4252]
 gi|262333662|gb|ACY47459.1| type II secretion system protein E [Rhodothermus marinus DSM 4252]
          Length = 1126

 Score = 38.0 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 44/599 (7%), Positives = 131/599 (21%), Gaps = 42/599 (7%)

Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378
              G +             +    +  E +  +     +DV+   A    + +++ A   
Sbjct: 71  AGDGHAEDALPELPETPEPEEAEAETAEAEPSDRAAALTDVSAEVASARPQASLADATPG 130

Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438
           R    +   +          A      + R G+          ++    + +  L     
Sbjct: 131 REGARQEPPR----PKQEPTAEPPGASVDRGGVPPTARDSRT-ASLPEGAFMPELAEMFE 185

Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498
                  +  L+     +     + +   +   E    R       +   +  VL   A 
Sbjct: 186 DDV----VMALLYGGAVRLDQIARAIVLRRRRPEQRLWRCLLEVPGVD--RETVLAEAAR 239

Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558
                  P  + R S E  +  +LL+   +Q +           +               
Sbjct: 240 VGGIAPAPVDEERPSVEFIKAILLLLPPSVQHMLFDWQLLPCGFAQGKEGGRVLLLATHD 299

Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC-----IKANAIEWIDIITRLI 613
                +                 + + +     +E+                  +     
Sbjct: 300 PTRPELKQVLQELRLPAELRYAPERILTKRLAELESFRPPVLEPEPPTPEAQPQVQAPEP 359

Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
           + +    + E      +  T      + D +    L E            L     ++++
Sbjct: 360 EIDRTPAQPEPEPPEPVAETPTPEAADPDAVRKAALPESPEDDEPDGGVGLQEAGTAEVS 419

Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733
              A +           A     +  + +              + L      +       
Sbjct: 420 EPAAPEIQPAEEVPATFAREAPPVADSPAE----------PLFEPLQGEALEEPKAETTP 469

Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793
             Q         +   +             +      +  + +  +  P  +    + +L
Sbjct: 470 EAQAEAALETAPEVAVETLDAASDAIGDEKQEADAPEAADDGED-VPPPVKIVLDDLPEL 528

Query: 794 DFIPHFKKDPDRTD--RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851
                  +   R         H +     +++ ++   E    +    D   +       
Sbjct: 529 KAAIARDRVVSRLLEKDVVALHQVYQA-YQRQQDEGLKEPLWRVLAQSDHVPQDAIYEEA 587

Query: 852 IDIIWRHLFH------------KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898
             +    +               +  +F E   +    +  +   +       ++ + L
Sbjct: 588 ARLYAFPIARLEPGKPSPEFVRSVMDTFEEEVRERLIELRVVPFEVDLDAQTGAVKLVL 646


>gi|229494107|ref|ZP_04387870.1| amino acid adenylation domain protein [Rhodococcus erythropolis
            SK121]
 gi|229318469|gb|EEN84327.1| amino acid adenylation domain protein [Rhodococcus erythropolis
            SK121]
          Length = 5569

 Score = 38.0 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 77/775 (9%), Positives = 183/775 (23%), Gaps = 76/775 (9%)

Query: 178  GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--GPIIIAGS 235
                  A D L          L             A +  E   L    +  GP+I+A +
Sbjct: 1102 SEHVQAALDALVTRHDALRATLTSEGRLLVPETNEAAVVFETRALPAPLEECGPLIVAET 1161

Query: 236  TGSIPATAR---------LMSTVANHPNGAIVLPGLDCH------IPTAIWNTITEKSTN 280
              ++              L   V       +V+  +         I   +          
Sbjct: 1162 ERAVGRLNPADGTMVSAVLFRPVTGPGRLLLVIHHVVVDGVSWRIILEDLARAGIAAMNG 1221

Query: 281  ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340
               +     T  +     + + +   R D +     S     R+ +  +   P       
Sbjct: 1222 DEPALAPVGTSVRRYAELVSEAVGAGRLDSEIEFWDSLTSAQRASLGRRPLDPAVDLART 1281

Query: 341  NTDILENKIPNIQKCFSDV--ALIEADNEREEAISIAIALRMS---------LDENKKKS 389
                     P +             AD       ++A+AL            L+ + +  
Sbjct: 1282 AAARSITLPPELADQLLGSVPRAFGADVSEVLVTALAVALTRWSGAGSVTIDLEGHGRDE 1341

Query: 390  ALITADRNLARRVKLELT--RFGINIDISAGIPLSTTLHSSIL--------TSLLNAIFK 439
             ++  D      +   +        + +  G        +  L          L      
Sbjct: 1342 DIVRGDGAAHVDLTRTVGWFTTVFPVALEIGTAAPDLDATDDLAGVLKSVKEQLRRVPNA 1401

Query: 440  LNDFMAIATLVKHPLAKFGFPEKYLS------RAKNALELVALRGNKNSYDIMDLKSLVL 493
               + A+  L            + +        A                 +    +L +
Sbjct: 1402 GFGYGALRYLGSSDQLGSVAAPEVVLNYLGRTAAAEGDWFPVSMDGAADPSMPLGHALSV 1461

Query: 494  DRIATQKNNTHVPHWQSRLSE--EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
            D +A               +     +          L  +  +        +T  +  + 
Sbjct: 1462 DVVAEDAAGGPRLRATLTWASNIFLRSDIDRFARLWLDSLEAVSGLAAFGGATPSDYPLV 1521

Query: 552  DWTKL-------TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604
               +            L    L E     + + +             +       A    
Sbjct: 1522 ALAQADVDGLPKAEEILPLTPLQEGIYFHSAFADPGADQYVVQQVVELTGAVDSAALHRA 1581

Query: 605  WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK-NPF 663
               ++ R     T    +     + ++       +    +    ++E +        +  
Sbjct: 1582 LQSVVDRHEALRTGFSVLGDGRVVQVVHPSAVVEMAVVEVAGADVDELLSADRARGFDLA 1641

Query: 664  LSRVMQSDLNLKTAEKYIGQAAHDFEMANG------TRHLIYTRSLRENNIPT-IASRWL 716
               +++  L   ++EKY+   +    +A+G       R L+ + S+ ++ +     + + 
Sbjct: 1642 QPPLVRYTLVRASSEKYLLLQSIHHAVADGWSVPVMLRELMASYSVGDSGVVLPTPAPYR 1701

Query: 717  QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR-TYSFSEI 775
              L  L   D   +          W   L+          P          R   S S+ 
Sbjct: 1702 SYLEWLARHDHEAS-------AAVWRETLNSPGPAVELPAPSAGSSGVCATRVELSDSDT 1754

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            + L  +         L L  + H         R T   +++          + P I  ++
Sbjct: 1755 RALAINGR----SHGLTLSTLVHGAWGL-VLGRMTGRTDVLFGSTVSGRGGDLPGIESMV 1809

Query: 836  KQIIDSHFEKENLPPH-IDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAK 888
               I++   +    P          + +     L+H+      + +   +    +
Sbjct: 1810 GLFINTVPARLWFDPAETAAQALSRWQREQSELLDHQYLGLPELRRTGGLEQDFE 1864


>gi|148256146|ref|YP_001240731.1| hypothetical protein BBta_4801 [Bradyrhizobium sp. BTAi1]
 gi|146408319|gb|ABQ36825.1| hypothetical protein BBta_4801 [Bradyrhizobium sp. BTAi1]
          Length = 2167

 Score = 38.0 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 77/774 (9%), Positives = 176/774 (22%), Gaps = 58/774 (7%)

Query: 150  KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209
            ++ A ++  +  E      +  +   +          FL+ A    T R +    +    
Sbjct: 1313 QDQARLVHEMAREGTT---VLEIVPSQLR-------AFLQPAPDAATTRALGQLRALIAT 1362

Query: 210  YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
             +        +      + P+I A               VA  P+ +  +P         
Sbjct: 1363 GESLAPDLCEDWFRHFPQVPLINAYGATECSDDVATHRMVA-PPSASSTVPIGRPIANVR 1421

Query: 270  IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
            +                             L+     R          +           
Sbjct: 1422 LHVLDRHLQPVPIGIAGELYVGGVAVGLGYLNDPGQTRSRFLPDPYSPDSSARLYRTGDL 1481

Query: 330  SFLPPDTSDMRNTDILE-NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388
            +    D +      + +  K+   +    ++    A +    A +I        D     
Sbjct: 1482 ARWRADGTLECFGRVDQQVKVRGCRVELEEIEHALAQHPAVRAAAILARDTRYGDTQLTA 1541

Query: 389  SALITADRNLARRVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
              +    +  A        R  +   +  AG  +   L  +             D  A+A
Sbjct: 1542 YIVAADGQPPAVDDLNGFARSRLPAHMIPAGYVMLDQLPVT--------AHGKLDRTALA 1593

Query: 448  TLVKHP------LAKFGFPEKYLSR--AKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499
             L   P            P + L      + L         N +D+     L    +A  
Sbjct: 1594 ALGSLPATTGGDHVAPRTPTEQLLAGIWVDVLGCGECGVTSNFFDLGGHSLLAGRVLARV 1653

Query: 500  KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN--STCGNLSISDWTKLT 557
             +   V      L E     A+ L     +      T +               D    T
Sbjct: 1654 ASTLGVSLPIRTLFEASTIEALALRVDQARATAAPQTLQVQWRSDQRTVISIQQDQIVRT 1713

Query: 558  VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               L  +          L    + + L++    +I     ++ +           +    
Sbjct: 1714 ERDLPGLPQFNLPYAYRLRGPLDARALAASLVDVIRRHPSLRTSFHSVDAAPEPQVLDSA 1773

Query: 618  VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
                + ++ T+ I      +      L    L                 +    L     
Sbjct: 1774 AITSVLETETIAIPAPPGDKRARTLMLKKAELRIAQEAWRPFDLARAPLLRARLLRFGPD 1833

Query: 678  EKYIGQAAHD-----FEMANGTRHLIYTRSLRENNIP-TIASRWLQRLLVLGGTDFFDNL 731
            +  +    H      + M      +    +        ++ +  +           +   
Sbjct: 1834 DHVLVLIMHHVIVDGWSMGVLFEEIAALYAAHIGGREASLPTPVVAFSEFAAWQAKWCIS 1893

Query: 732  KKRGQCYLDWTRKLDYTTK----QPHYKRPKPFPPLEAQPRTYSFSEIKQLIN----DPY 783
                +   DWT +L   +            +P P +           I +L      D  
Sbjct: 1894 AAAARQLADWTHRLRGASPLFNAPAGQAGEQPSPRVATAAFHLPRRLIDRLTRLSHGDGA 1953

Query: 784  AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843
             ++   +     +   +        GT   N      ++ +             I+ +  
Sbjct: 1954 TIFMALMAGFKAMLMARTGRGDICVGTTMANRFERWTERIVGPVENTT------IVRTQL 2007

Query: 844  EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
            E E          R +  ++  S L+   + +   E +         ++   + 
Sbjct: 2008 EPELSF-------REMLRRVRDSLLDAHARQELPFETLVAEFSGAAELDLAALT 2054


>gi|320333853|ref|YP_004170564.1| AAA ATPase [Deinococcus maricopensis DSM 21211]
 gi|319755142|gb|ADV66899.1| AAA ATPase [Deinococcus maricopensis DSM 21211]
          Length = 889

 Score = 38.0 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 69/669 (10%), Positives = 135/669 (20%), Gaps = 39/669 (5%)

Query: 62  SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121
                I        P  ++L   +  +  A +  S       +   R + LA L      
Sbjct: 52  DRLAVILDTPERFDPHTRALLGPLLARADATITGSATPAAAPTPGPRTVILAPLSAQGAR 111

Query: 122 KLPDIIKDLYPESPLSLPISPANAI---WLAKNLADIIDIIETEEKKWEDLH-------A 171
            L +        +P+   ++   A     L      ++          +DL         
Sbjct: 112 SLAEARAGRALATPVHTWLAARAAHLPGPLITWTDALLLEAHLRRLDPDDLPTEPDPAWE 171

Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG-------------YQIALMRAE 218
               ++      A   L        E     +                        +  E
Sbjct: 172 AAVAQHVTLAARALPHLPYLYGRAHELRAARDVLHRQPILTFTGPSGRGKTRLALQLAGE 231

Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
           A     G    + +AG   +  A  R+   +   P  +     +   +       + +  
Sbjct: 232 ARPDFPGGVHVVSLAGVPSTDVALVRIAEALLGTPPPSADAASVARLLARRPTLLVLDAP 291

Query: 279 TNITSSNTTYS----THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334
                S           P   L          R +             R+ +  ++   P
Sbjct: 292 EGHLLSAPLLEHLHHLSPSMRLIVTASTALGARGEALLPVPPLLPAAVRAALHDQTRDEP 351

Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394
              +     +++            V L+     R  A  +                    
Sbjct: 352 APDEADLARLVDLIGGEPFTLELAVPLVVTLGARGAAQHLERVPPADRAPVTSLW---RQ 408

Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454
                +RV   L  F           ++          L   I   +       L ++P 
Sbjct: 409 LGTHEQRVLTALATFDGPFHPQWAERVAQASTF----LLSALIHHRHLHAVGGGLYRYPG 464

Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-----SLVLDRIATQKNNTHVPHWQ 509
           A   F    L         V  R  +     +        +      A            
Sbjct: 465 ALHTFARAQLHHQPAWRARVQGRVLREVQATLRAAPTGTPAWFAALDAAYPTVRSALGGL 524

Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569
                    L+  LVD     +     Y   ++      +           L  V     
Sbjct: 525 LAHPPAAPTLSEALVDLTTYRVARGHLYDAREDLRRALRAEPPDAPRLQLALATVLQHLG 584

Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629
                       +  +        T   +                    +  +  +  L 
Sbjct: 585 DHEAAQATATALRDAAERAGNPALTAHALIVEGRVLHRRSRYPESRARFEQALGLARALR 644

Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689
            +      L       L         +  A+    +  + + L L  A       A D  
Sbjct: 645 DVPLAVRALDGVARSALYFGALDAARQAAARTVRHAERLGAPLLLADALNTAALVATDER 704

Query: 690 MANGTRHLI 698
                R L 
Sbjct: 705 DLPRARELF 713


>gi|200390418|ref|ZP_03217029.1| putative RecF/RecN/SMC N domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199602863|gb|EDZ01409.1| putative RecF/RecN/SMC N domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 1046

 Score = 38.0 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 46/442 (10%), Positives = 102/442 (23%), Gaps = 34/442 (7%)

Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234
            +    W    +  +   +                     +RA A               
Sbjct: 290 RQLRPHWERIQEQTRAVERVRQHSDEVNARLQSAYRLRQRIRACAHRQFTQLN------- 342

Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
                 AT + + T     +G  V                         +  T  +H + 
Sbjct: 343 ------ATGQRLKTWLAEHDGIRVW----------------RSELAGWRALLTQQSHDRA 380

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            L++    L         L  ++ ++  +++  +++              L+ +I   QK
Sbjct: 381 QLSQWQQQLLSDTRQRDALPPLTLDLTPQALAEARALHTRQRPLRHRLAALQGQILPKQK 440

Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
             + +    A + +E+A      L       K K+  +   R +  +             
Sbjct: 441 RQAQLQAAIARHHQEQAQY-TQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAH 499

Query: 415 ISAGIP----LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
           + +G P     STT  +      L          A+   VK    +       L      
Sbjct: 500 LQSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQ 559

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
           L+           +   L        AT           +      +E    L     + 
Sbjct: 560 LQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQLSQRH 619

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                     +        I+         L    L          +  E    + ++ +
Sbjct: 620 ALQTQIAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAPEDEASWLNERADEAKIWQQ 679

Query: 591 IIETGSCIKANAIEWIDIITRL 612
                + ++        ++  L
Sbjct: 680 RQTEFADLQMQIDRLAPLLETL 701


>gi|164660670|ref|XP_001731458.1| hypothetical protein MGL_1641 [Malassezia globosa CBS 7966]
 gi|159105358|gb|EDP44244.1| hypothetical protein MGL_1641 [Malassezia globosa CBS 7966]
          Length = 852

 Score = 38.0 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 55/600 (9%), Positives = 142/600 (23%), Gaps = 30/600 (5%)

Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
           Y    +   +   + D  R       ++        S L  +        ++        
Sbjct: 67  YRKDAMYRRMREAKRDAARAREQEASLHEALARTRHSVLLVNQFWDALDALIRPTQRAQL 126

Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
               D+A I   +  EE  +     R  L+      AL++     A      L     N+
Sbjct: 127 SDGKDLAPISLTHTTEEQAAALAERRSMLE------ALLSQTTAAALAAAPSLESSSANV 180

Query: 414 DISAGIPLSTTLHSSILTSLLN-----AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468
                  ++ T   S +           +        +  L++H  A+           +
Sbjct: 181 YDDKQQCITLTAELSAVRQAFETTRLRLVESQEHTEHVTELLRH--AEKRLDRLMCESVR 238

Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
              +       +         +   D  A   + T      +R +   + L      H+ 
Sbjct: 239 AVEDPQGYERMRAQNASQSASATNDDAGAPFSSKTDGSSSATRDAPASEALTAEKTAHVA 298

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588
                          +    ++ +                      L   ++      L 
Sbjct: 299 VGRAGTSDMVRGPAFSSPAHAMQEELDNVRDLAHARQQALDAVRSELLEAQQACASCQLQ 358

Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648
            + +           + +      +  E    +      L    +  + L  F    +  
Sbjct: 359 LQHVPDDRVRAHPIYQALHADVAYMQQELDHVR----DALASSESENASLREFRADFVHQ 414

Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708
                   N      L+        L+T    +        +           +  +   
Sbjct: 415 TTTQAKTHNDELQKQLNARDADMARLRTQRDELNAE-----LLERRSREGVRFAQIDEAK 469

Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768
             +AS   +   +         L+   +                 + +        A   
Sbjct: 470 AFLAS---KEERMAALHAQVARLQAELEALRADAAGSHGQDDGHEHGQASDSAEATASGH 526

Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828
           + + +++++ +    A +    +  D +       D   +           ++ +I + T
Sbjct: 527 SQAPAQLQRQLQ---AAHTSSAMLSDEVDRLSAAYDELVKQADARVSNAARLEDKILRLT 583

Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
            E      +   +   ++ L      + R      K+   + E E  +Q+ I+     + 
Sbjct: 584 TEKAKADNKYFAAMRARDALDAEKRALTRSAERQAKVIERYTETERAMQAQIQLAEKEVS 643


>gi|104780964|ref|YP_607462.1| peptide synthase [Pseudomonas entomophila L48]
 gi|95109951|emb|CAK14656.1| pyoverdine synthetase A [Pseudomonas entomophila L48]
          Length = 4315

 Score = 38.0 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 42/378 (11%), Positives = 89/378 (23%), Gaps = 26/378 (6%)

Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLAR- 400
           T +       +    S   L EA    E + ++A  L    +   +  AL   D+ L + 
Sbjct: 619 TQVTARLSDELGVALSLRTLFEAPTLAEYSAAVAAMLAEGGEGVGR-IALQGRDQALPQS 677

Query: 401 ------RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN----------DFM 444
                  +  +L       +I AG+ L   L  + L +   A+   +          D  
Sbjct: 678 LAQNRLWLMWQLEPQSAAYNIPAGLHLRGELDEAALEASFQALVARHESLRTVFDEVDGQ 737

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
           A+  ++  P   F      L                     + +  L+   +A   + +H
Sbjct: 738 ALQRIL--PSLPFAVQRLDLEGLGADEVTARREREAQQPFDLRVGPLLRVTLARLDDESH 795

Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCL 561
                      D     +L+D   +                G     +W +         
Sbjct: 796 QLWVTLHHIVADGWSLNILLDEFARLYAAQGQAMNLAELPLGYADYGNWQRQWLAEGEAA 855

Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621
           + +          L   +          +             +    +  L         
Sbjct: 856 RQLAYWTDTLGDELPVLDLCTDQPRGKQRKHSAARLSLKVPAKLGGALKDLARDRQASLF 915

Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD--LNLKTAEK 679
           +   +    L            + +   N            F++  +           E+
Sbjct: 916 MVLLAGWQAL-LHRYTGQGDIRVGVPNANRPRLETQGMVGFFINTQVLRTELDGRLPFEQ 974

Query: 680 YIGQAAHDFEMANGTRHL 697
            + Q       A   + L
Sbjct: 975 LLAQVRQATLGAQAHQDL 992


>gi|317509559|ref|ZP_07967146.1| hypothetical protein HMPREF9336_03520 [Segniliparus rugosus ATCC
           BAA-974]
 gi|316252145|gb|EFV11628.1| hypothetical protein HMPREF9336_03520 [Segniliparus rugosus ATCC
           BAA-974]
          Length = 196

 Score = 38.0 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 56/190 (29%), Gaps = 9/190 (4%)

Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
            +     ++ D      +            L    F       SS  ++ +     I   
Sbjct: 1   AAARSAQTVEDVLWAAWSASGLEERWGDEILAEPDFAAVNALFSSARAQHVADSREIGPA 60

Query: 602 AIEWIDIITRL-IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660
             ++ + I R  +           S  + +     +    +D +++ G+ EG+WP  +  
Sbjct: 61  LAQFAERIERERLPAPGRIADGGGSDAVTLSSAHAAAGREWDVVVVCGVQEGLWPGLSES 120

Query: 661 NPFLS--------RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712
           N  L           +++D  L   ++ + Q      +A          +  E     + 
Sbjct: 121 NSLLGVDELAAAFDGVRADAKLDARKQVLAQERRLLYLACSRARDQLLLTAVEGEGDLVP 180

Query: 713 SRWLQRLLVL 722
           SR+L      
Sbjct: 181 SRFLPLWWQA 190


>gi|297300250|ref|XP_002805560.1| PREDICTED: plectin-1 isoform 5 [Macaca mulatta]
          Length = 4514

 Score = 38.0 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 66/790 (8%), Positives = 184/790 (23%), Gaps = 45/790 (5%)

Query: 92   DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
                   L    + +++  +LA      + +     K+L       +      A+   + 
Sbjct: 1323 RAEERERLAEVEAALEKQRQLAEAHAQAKAQAEREAKELQQRMQEEVVRREEAAVDAQQQ 1382

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA--DFLKIASKYWTERLVELNASSPVG 209
               I + ++              +            + +++          +   +    
Sbjct: 1383 KRSIQEELQXXXXXXXXXXGQARQAEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGEL 1442

Query: 210  YQIALMRAEAEHL------MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
              +     EAE                +   S     A A L   V      A       
Sbjct: 1443 QALRARAEEAEAQKRQAQEEAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREKQRAL 1502

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
              +   +     E    +  +    +   Q +L       +++ +  +           R
Sbjct: 1503 QAL-EELRLQAEEAERRLRQAEVERARQVQVALETAQRSAEVELQSKRASFAEKTAQLER 1561

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS------DVALIEADNEREEAISIAIA 377
            S+      +     +       + +    ++          +   EA   R +A  +A  
Sbjct: 1562 SLQEEHVAVAQLREEAERRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQ 1621

Query: 378  --LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              L  +  E +K+ A   A R      +    R     ++     L+       L +   
Sbjct: 1622 KSLAQAEAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQE 1681

Query: 436  AIFKLNDFMA---IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
             I    +         L++  LA+        ++ +  LE    +         +++ L+
Sbjct: 1682 LIRLRAETEQGEQQRQLLEEELARLQREAAAATQKRQELEAELAKVRA------EMEVLL 1735

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
              +   ++ +        +  E +      L +     +  L      +       +   
Sbjct: 1736 ASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAA-RLRALAEEAKRQRQLAEEDAARQ 1794

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              +      + +             E   K   +   ++                     
Sbjct: 1795 RAEAERVLAEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRR-------- 1846

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            ++ +  + K +    L  L       L     ++                  +   ++  
Sbjct: 1847 LEEQAAQHKADIEERLAQLRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 1906

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                 E  +G+   + E    ++      + R+  +     +  +              +
Sbjct: 1907 GKAELELELGRIRSNAEDTLRSKEQAELEAARQRQLAAEEEQRRREAEERVQKSLAAEEE 1966

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
               Q             K    +R +     E+           QL  +      +   K
Sbjct: 1967 AARQRKAALEEVERLKAKVEEARRLRERAEQESA-------RQLQLAQEAAQKRLQAEEK 2019

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                   +K+ +         +++  L  +              ++     E+E      
Sbjct: 2020 AHAFAVQQKEQELQQTLQQEQSVLDRLRSEAEAARRAAEEAEEARV---QAEREAAQSRR 2076

Query: 853  DIIWRHLFHK 862
             +       +
Sbjct: 2077 QVEEAERLKQ 2086


>gi|289768088|ref|ZP_06527466.1| type I polyketide synthase [Streptomyces lividans TK24]
 gi|289698287|gb|EFD65716.1| type I polyketide synthase [Streptomyces lividans TK24]
          Length = 4599

 Score = 38.0 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 92/932 (9%), Positives = 212/932 (22%), Gaps = 77/932 (8%)

Query: 10   TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASV--TIYVPTKRAIQELRSEFIEI 67
            ++             L+   +     Y     L    V       T     ELR+   E 
Sbjct: 954  SVPAGRAERLRYAEDLVTSHVTAVLEYGDGERLD-PRVPFQKLGFTSLMTTELRAALAEA 1012

Query: 68   TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127
            TG     LP     G ++ +  T   L ++                  I       P  I
Sbjct: 1013 TG---LALP-----GSLLFDHPTPRELTAFLATRLADTTDEPEAGEEFIRPADAGEPIAI 1064

Query: 128  KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187
              +    P  +  SPA    L     D I          +DL+    ++ G   +    F
Sbjct: 1065 VGMACRFPGGIT-SPAQLWKLVSEGGDAITEFPVNRGWPDDLYDADPDRPGRSAVRHGGF 1123

Query: 188  LKIA----SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS------TG 237
            L  A    + ++     E  A  P   Q  L+ +  E + +    P  + GS        
Sbjct: 1124 LHDASEFDADFFGISPREALAMDP--QQRLLLESAWEAVERAGIDPDTLRGSRTGVFVGA 1181

Query: 238  SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297
            +       M        G+++       +   I   +      +T+     S+    +L 
Sbjct: 1182 TALEYGPRMHEAPESVQGSVLTGSTTSVMSGRIAYQLGLLGPAVTTDTACSSS--LVALH 1239

Query: 298  KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
              +  L      +   G  +        V               +           +   
Sbjct: 1240 LAIRSLRSGETSLALAGGATVMSSPGMFVEFSRQRGLAPDGRCKSFAAGADGTGWSEGVG 1299

Query: 358  DVALIEADNEREEAISIAIALR-MSLDENKKKSALITADR-NLARRVKLELTRFGINIDI 415
             + +    + R     +   +R  +++++   + L   +  +  R V+  L   G+    
Sbjct: 1300 LLLVERLSDARRNGHQVLAVVRGSAVNQDGASNGLTAPNGLSQQRVVRQALADSGLAATE 1359

Query: 416  SA-------GIPLSTTLHSSILTSLLNAIFKLNDFMAIATL-------VKHPLAKFGFPE 461
                     G  L   + +  L +           + + +L                   
Sbjct: 1360 VDAVEAHGTGTRLGDPIEAEALMATYGTGRDGLPPVYLGSLKSNIGHAQAAAGVGGVIKM 1419

Query: 462  KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521
                R       + +       D       +L       +                  A 
Sbjct: 1420 VEAIRHGVLPRTLHVDEPSPRVDWNAGALELLTGERAWPDTGRPRRAAVSSFGISGTNAH 1479

Query: 522  LLVDHILQCITPLVTYKTNKNSTCGNLSI--SDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579
            ++++       P       +        +  +          + +               
Sbjct: 1480 VVLEQAPDAPPPSAAPPATQAPAVPAPWLLSARDPDTLRAQAERLRAYADG-DRAPEPAA 1538

Query: 580  EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639
             G+ L++  +   +    +  +   ++  +  LI G      +  S+             
Sbjct: 1539 IGRALATTRTAFEQRAVVLAEDRAGYLAGLDALIRGADAPGVVTGSARSAGRTAFLFTGQ 1598

Query: 640  NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG------ 693
                  +G       P            + + L+L   E                     
Sbjct: 1599 GAQRAGMGRELYARHPVFAEALDAAFGALDAHLDLPLREVVFAAEGSREAALLDETTYTQ 1658

Query: 694  ----TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749
                   +   R L  + +            +                 +    +L    
Sbjct: 1659 PALFALEVALFRLLEHHGVTPGLLAGHSVGELSAAHAAGVLTLDDAAKLVAARGRLMQAA 1718

Query: 750  K------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803
            +             +  P LE +    S + +    +   +      L++  +       
Sbjct: 1719 RSGGAMIAVEAAEEEVLPYLEGRAAGLSVAAVNGPASVVISGDEEPALEVAEL------L 1772

Query: 804  DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH----------FEKENLPPHID 853
              + R T    +        ++        +   +  S                      
Sbjct: 1773 RASGRRTKRLTVSHAFHSPHMDGVLDAFREVASTVAFSAPTVPIVSTVTGRLATEAELTS 1832

Query: 854  IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
              +     + +  FL+   ++ +    +FV  
Sbjct: 1833 PQYWANQIRAAVRFLDAARELAAQGATVFVEA 1864


>gi|76809272|ref|YP_334379.1| hypothetical protein BURPS1710b_3001 [Burkholderia pseudomallei
           1710b]
 gi|167911992|ref|ZP_02499083.1| val start codon [Burkholderia pseudomallei 112]
 gi|76578725|gb|ABA48200.1| val start codon [Burkholderia pseudomallei 1710b]
          Length = 932

 Score = 38.0 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 42/501 (8%), Positives = 115/501 (22%), Gaps = 31/501 (6%)

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
           A+ + N   A+         +         R ++ L        ++  D++ +       
Sbjct: 206 AVVEANRDDALLHRAAERFERRLLDRAQSRRHEHVLVGREFLHGQHDIDLLAVLQREHVD 265

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV---TYKTNKNSTCGNLSISD 552
             T             L            D +++             +        +   
Sbjct: 266 DRTAARVARALRHLVHLDPVHAAAVREAQDVVVRVRDEQRLDPVVFLHLRRLLAAAAALL 325

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              L      +V    HR    L  ++            +      +         + + 
Sbjct: 326 RAVLGQRLRLHVARVRHRDHHVLRRDQVFGVQLGRVQLDLRAARIAELRLH-----LRQF 380

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           +  +   P   + +   I        +  D L+L    E +                  +
Sbjct: 381 VADQRRDPLGPRENVEQIGDLRHHVAIFADDLVLLEAREALQAHLEDFLRLRVGQPVQAV 440

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
            L    +          +A   R ++  R+           R+  R  +L          
Sbjct: 441 ALHAERRTQAL--RTVRVAPAGRRVLGFRAREHVAHERRIPRF--RHQLLLRDRRRRRGF 496

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                 +D   +     +              A  + ++    + L + P     R ++ 
Sbjct: 497 DDRDELVDVRERDGEAFEHVAALARLAQFVDGAPRQHFAPMRQEALQDLPQIQELRLVVD 556

Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                H ++    +    +  + +       ++ +           +    E   +    
Sbjct: 557 ERDHVHAERVLQLSRLVQVVQHHLGHFAALELDHDAHAALVGFVADVGDALELLLVDELR 616

Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM-----------------AIESIG 895
           D + +     +   F++ +    +      + +  +                  A++  G
Sbjct: 617 DPLEQRALVDLVRQFVDDD--RHALAAVDLLEVRGRAHHDAPAPGAIAVAHAGDAVDDAG 674

Query: 896 IHLTGFADRIDLLKSGFVDIT 916
               G  D +D      + I 
Sbjct: 675 RREIGRGDDLDQFVDARLRIV 695


>gi|330952966|gb|EGH53226.1| ATP-dependent helicase HrpB [Pseudomonas syringae Cit 7]
          Length = 657

 Score = 38.0 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 31/380 (8%), Positives = 88/380 (23%), Gaps = 10/380 (2%)

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
           + + +         +        R+S             +   +   +  +   +     
Sbjct: 107 IDAGLARVPRFDPGSGMTRLETQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAY 166

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +              +          +W +       +    ++     +     +   
Sbjct: 167 GAAEILQADLAGLALQLARWGVTPAQLVWLDVPPAAAYAQAQDLLVRLEALNNQPGQPPA 226

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
           +         +      +  L     L    L  D   L G  + +       +  L+ +
Sbjct: 227 LTPHGQAMAELPAHPRIAHLLLRGHALGLGELACDVAALLGERDILRGAGADLHSRLTLL 286

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
             ++   + A+  + +A       +         +          SRWL  LL L   D 
Sbjct: 287 AGTERAARGAQGGVQRAR----QLSRQYRGYLRGAASSPVSDPDHSRWLGALLALAYPDR 342

Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
               ++ G               +      +P+  +          E +  +   +    
Sbjct: 343 VAQQRRAGGAEYRLANGRAALFAEADALMKQPWLVIADLGSRQGQREERIYLAAEFDPAL 402

Query: 788 -RRILKLDFIPHFKKDPDRTD---RGTLFHNIITELIKKRINKNTPEI--NHLMKQIIDS 841
              +L    I   + D D  +   R      +   +I +       +   +H +  ++  
Sbjct: 403 FDSVLAEQVISVDQIDWDEREGVFRAERQRKVGELIISREPLTGLDDATRSHALLALVRR 462

Query: 842 HFEKENLPPHIDIIWRHLFH 861
              +          W+    
Sbjct: 463 KGLELLPWTPELRQWQARVA 482


>gi|320096035|ref|ZP_08027641.1| hypothetical protein HMPREF9005_2253 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977029|gb|EFW08766.1| hypothetical protein HMPREF9005_2253 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 1152

 Score = 38.0 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 27/357 (7%), Positives = 73/357 (20%), Gaps = 15/357 (4%)

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            A            L +  L         +                +  +++  +  ++ 
Sbjct: 131 EADDGPVSLSTPIALERTELLGMAEQRPTVLVVTMRAGDWCREERMSGPEVLAARQWIVG 190

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
           +   Q           +               +L   T   +    +       +  D  
Sbjct: 191 Q--DQAWAAMTLSTFVQPQHPRLSDLEREAATLLDQWTGSASLDGYQGGPERVDAAVDAL 248

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
                                                 +      A+ ++   ++   ++
Sbjct: 249 CHAFAARSIAYAPPQGNWSERGHR---------LRDAEDVLQGRLASRLDAALVLASALE 299

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              V+P +       +LG  +S   + + + + G                +  +      
Sbjct: 300 HLRVEPLVVVCGATAVLGYWKSERHSAENVAMPGWQLVNQIDRGLIGLVDTGSLVESPPP 359

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
              E             +G R ++  R  R         R + +   +         +  
Sbjct: 360 PLREVAARARRILRADGSGARFVVSVRQARLEGARPQPVRSVGQDGAVVEIAAPVVERSN 419

Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791
                +   +              P      +      S   +LI+ P +  A   L
Sbjct: 420 TITLENLPEQ----GGARPSLPAAPPRVEGWKAALLDLSARNRLIHCPDSAVASHRL 472


>gi|320103542|ref|YP_004179133.1| beta-ketoacyl synthase [Isosphaera pallida ATCC 43644]
 gi|319750824|gb|ADV62584.1| Beta-ketoacyl synthase [Isosphaera pallida ATCC 43644]
          Length = 2373

 Score = 38.0 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 59/768 (7%), Positives = 150/768 (19%), Gaps = 79/768 (10%)

Query: 104  SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
            + +   +EL  L  +WR           P   +   +  A     A  L  ++D +ET  
Sbjct: 377  TPVGDAVELESLHTLWREAGEQGPPGRCPLGSVKSNVGHALTAAGAAGLLKLLDALETRR 436

Query: 164  KKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
                  L                                   SSP             H 
Sbjct: 437  IPPTSGLRNPLPALDSR-------------------------SSPFRVLTRAEPWTPRHP 471

Query: 223  MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282
             +  +  +   G  G                   +++       P+              
Sbjct: 472  DQPRRAALSGFGFGGINA---------------HLLIEEAREDSPSVSAAGSPRPRFEAP 516

Query: 283  SSNTTYSTHPQY-SLAKLLDFLDIKREDVKRLGNVSNEMYGRS--MVISKSFLPPDTSDM 339
            ++       P   ++  L    D   +       + +    R               +  
Sbjct: 517  TTPARNEDPPPALAVVGLAIRTDRHPDLNAVRTALFDPSPPRLDDPKAKPPQRAYRIAPG 576

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA-LRMSLDENKKKSALITADRNL 398
            R           + +    + +     E     + +    R   D              L
Sbjct: 577  RFRVPPRELEQALPQQILALDVATRAWEDAHGPAASDQTTRRHQDRTDHPRVGGFVGLEL 636

Query: 399  ARRVKLELTRFG-----INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453
              R      R+         +++ G  L     + ++  L            +   +   
Sbjct: 637  DPRTCDFHARWHAVLLVHACELAQGGTLDDQTKADLVRRLSQGAHPPLSPDRVMGALGG- 695

Query: 454  LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513
                      ++R            + ++  +  L+         +     V        
Sbjct: 696  -----IVASRIARELRLGGPCFTLSSGSTSGLDALRVAAQAVQRGELEAAVVVAADHAQD 750

Query: 514  EEDKELAVLLVDHILQCITPLVT-----YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568
                     L +       P         K   ++      I    +            +
Sbjct: 751  PRTAARLAALGEADPGRHRPAAAGVALILKRFDDALKAGDPIWAVIESVGQAPPFSGQTD 810

Query: 569  HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI-----E 623
                 +   +    +      + +         A   +++   ++               
Sbjct: 811  PNSSISSEEQRSAASAMRFDGQGLTERLGATGAAAGLLEVARAILALHEDLLPPGVGTGP 870

Query: 624  KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683
                                +   G  E          P         L    A ++I  
Sbjct: 871  DRDRPRFWLRNRQDGPRRALVSRPGDLECHQVFLRGCEPRRRAASIQPLG-PPATQWISL 929

Query: 684  AAHDFEMANGTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
             A+D          + +   ++ +    IAS+ +    +  G        +     +   
Sbjct: 930  GANDQAGLLAALDRLESAGPIQPSTFQHIASQHVGPWRIALG--LTPGRPEDHGELVAAA 987

Query: 743  RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY--------ARRILKLD 794
            R++          +                ++        +             R +   
Sbjct: 988  RRVVTGQPLAGMSKWAARLVWTDPQLIAPSTDAPTQRRLAFVYPGTGAHCLGMGREIAAA 1047

Query: 795  FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842
            +    ++      R    +       + R      +   L+   +   
Sbjct: 1048 WPEILRRQDSENQRLKDQYRP-DLFWESRALPRPADPRDLLLAQVAHA 1094


>gi|300785575|ref|YP_003765866.1| non-ribosomal peptide synthetase/polyketide synthase [Amycolatopsis
            mediterranei U32]
 gi|299795089|gb|ADJ45464.1| non-ribosomal peptide synthetase/polyketide synthase [Amycolatopsis
            mediterranei U32]
          Length = 2684

 Score = 38.0 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 62/696 (8%), Positives = 148/696 (21%), Gaps = 65/696 (9%)

Query: 113  ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172
            A ++L              P        +P   I LA++LA  ++          DL  +
Sbjct: 430  AHVVLEEAPPRQPDADRTGPALLALSAATPRALIDLAESLATHLER------HPGDLAGV 483

Query: 173  KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232
            +   +                    RL      +   +   +                + 
Sbjct: 484  EATLHRG----------------RARLTHRRVVTGADHAELVAALREPAPPVEGTDRPVA 527

Query: 233  AGSTGSIPATARLMSTVANHPNG---------AIVLPGLDCHIPTAIWNTITEKSTNITS 283
                G     A + + +               A++ P L   +   +             
Sbjct: 528  FVFPGQGSQYAGMGAGLYRDEPVFRDVVDECAAVLRPHLGLDLRDVLHGADGGALDRTAL 587

Query: 284  SNTTYSTHPQYSLAKLLDFLDIKREDVK----------------RLGNVSNEMYGRSMVI 327
            +        +Y+LA+ L    +    +                  L +    +  R  ++
Sbjct: 588  TQPALFV-TEYALARTLMDRGLTPAAMAGHSIGEYVAACLAGVFTLPDALGLVATRGRLV 646

Query: 328  SKSFLPPDTSD--MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385
                     +        I   +        +                I   LR      
Sbjct: 647  QSLPPGAMLAVELAEKDVIELLRPGVSIAAVNGPRSCVLSGPSAAVREIETDLRARDVAC 706

Query: 386  KKKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFKLNDFM 444
            +           +   V  E T     + ++  G+   + +  + +T+         D  
Sbjct: 707  RVLRTSHAFHSGMLDPVLAEFTEAVAAVPLAEPGLRYLSNVTGTWVTAKQA-----TDPH 761

Query: 445  AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504
              A  ++ P+       +         E    R         +  ++ L R A    +  
Sbjct: 762  YWARHLREPVRFADSAAELARAGLVVAEAGPGRTLTTLVRRSEGTAVSLMRRAGDATDDL 821

Query: 505  VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
                        +   V L         P+V+                W +   +     
Sbjct: 822  PTLLSGVGRVWAQGGRVDLARFTGSDRHPMVSLPGYPFQRQRY-----WIEAGRSDSTVD 876

Query: 565  CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
                  +             + L        S    +      + T+L+   + +  +  
Sbjct: 877  SKPATGETLTGDQARIAAVWAELLGVDDVDASDDFFDLGGDSLLATQLVARLSSRFGLTV 936

Query: 625  SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
                         L +  T    G          ++ P  +   +        +      
Sbjct: 937  PLGAVFATPTLRGLTDAATPTTAGPAAEPVAVRPSELPATAVQRRMWFLDHAHDHPAAYV 996

Query: 685  AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
                   +G   +   R+     +    S  L+ +           ++      L  T  
Sbjct: 997  IATAADLHGPLDVAALRTALAEVVARHES--LRTVFPAPEGRPLQVIRAEVPVALPVTEA 1054

Query: 745  LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780
              +        +     P +          + +L  
Sbjct: 1055 --HPAGLDDLLQAAARTPFDLAEGPLFRFSLFRLDA 1088


>gi|319762703|ref|YP_004126640.1| hypothetical protein Alide_2009 [Alicycliphilus denitrificans BC]
 gi|317117264|gb|ADU99752.1| protein of unknown function DUF893 YccS/YhfK [Alicycliphilus
           denitrificans BC]
          Length = 727

 Score = 38.0 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 50/534 (9%), Positives = 125/534 (23%), Gaps = 26/534 (4%)

Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355
           L  L D + ++      + ++          +               DI+     + ++ 
Sbjct: 185 LLSLADLMRLQALQFTPVLSLGERDNPLMGALLLRQATLADQLQSARDIVLESPTSARQQ 244

Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415
                L+ A   R+  ++ A+ L     + ++  AL      L  +    +     +  +
Sbjct: 245 RLAGMLLCALEMRDHLLASALDLEQLRRQPEQAGALERLRDELLAQ--AGVLERLADALL 302

Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
               P         L +L            +   + + +         L           
Sbjct: 303 LGRKPEPQARPRLDLGALEEPAHAGFTPARLVRGLAYRIGHVQDEVGQLVALARGEREPD 362

Query: 476 LRGNKNSY-------DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528
           L   +  +                L R         +    +          +   +H  
Sbjct: 363 LALVRVYWQMFVSSTGWGWKPFWGLWRWRAAPLRHAMRAALAIGVGYAVSQLLPWREHAY 422

Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL--QNVCLDEHRKLPNLWFEEEGKTLSS 586
             +  ++       +              + CL    +   +      L      + ++ 
Sbjct: 423 WIVLTIIVVLRGSLAQTLERRNERVAGTLLGCLIASALLAADMPHWALLACVTLAQAVAH 482

Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES----RLLNFD 642
            F+      + + A  +  +        G T    +E+ +   I   L       L +++
Sbjct: 483 SFTLRRYLFTAVAATVLGLVQAHLLGAGGSTGFVLLERMADTLIGAGLAWAFAYVLPSWE 542

Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
              +  L                 + Q        E     A  +   + G       R+
Sbjct: 543 RQQIPALVARTLAAQMRHAREALALGQLQAVDNHPELAWRLARREAYDSLGALVQATARA 602

Query: 703 LRENNIPTIA-----------SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751
            +E                   + L +L  +           RG+      +      + 
Sbjct: 603 WKEPRAVRPPLAPLERMQAHCYQLLAQLTAVKSMLLLRRGHLRGEDVHAPLQAAAQRIEA 662

Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805
               +  P PP        +   +  L+      +  R L+L      +   + 
Sbjct: 663 ILSGQDMPAPPEHGADDGLAAEPLPALVETDLTPWLLRRLRLAEGLARQMRAEA 716


>gi|291301848|ref|YP_003513126.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
 gi|290571068|gb|ADD44033.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
          Length = 697

 Score = 38.0 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 59/621 (9%), Positives = 139/621 (22%), Gaps = 68/621 (10%)

Query: 45  ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104
             V     T RA  ELR    ++           ++       +        +       
Sbjct: 58  QHVLAVTFTARAAGELRDRLRDLGVTGVN----ARTFHAAALRQLRYFGPRLFG------ 107

Query: 105 NIQRLLELARLILI-WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163
                 EL  L+   W+       +        +     A+ +  A+      D      
Sbjct: 108 -----GELPELLDSTWKFVSIAAARAGITRMDKTKNRDLASELDWAQACLITPDEYPAAI 162

Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
            K + +  +        +    +          +R   ++ +  +G+    +    +   
Sbjct: 163 AKADRIPPMDASDVAKAYAAYLEA--------KKRAKVMDFADLLGHTATALEENPDIAE 214

Query: 224 --KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281
             +      ++       P   RL+       +   V+   D       +N  T +    
Sbjct: 215 QIRSQYRLFVVDEYQDVNPLQQRLLDAWLGERDDLTVV--GDASQTIYTFNGATSRYLVN 272

Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE--------------MYGRSMVI 327
            +        P+  + +L+       + V    +V                         
Sbjct: 273 FTRRF-----PEAHVVRLVRDYRSTPQVVALANDVIAAAGGGESKLRLQLIGQRADGPKP 327

Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA-----------ISIAI 376
           S    P + ++         ++       S++A++   N + EA             +A 
Sbjct: 328 SFDTYPDEAAEAAAVADRCARLIGQGVPASEIAVLYRTNAQSEAYESALDDVGVPTVVAG 387

Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436
           A R       + + +            L L         + G                 A
Sbjct: 388 AERFFQRAEIRSAIVALRQATHTDDGSLPLPLTVATAMDAIGWRADAPPTGGAARERHEA 447

Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496
           +  L         +          E     A      +      + +    L+   +  +
Sbjct: 448 VAALVRLAEDHAELS---LGEFVEELGRRAAAQHAPSMEGVTLASLHSAKGLEWDAVFLV 504

Query: 497 ATQKNNTHVPHWQSRLSEEDKELA-----VLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551
              +        ++R  +E++              +                    L+  
Sbjct: 505 GLAEGTLPTSRARTRAQQEEERRLLYVGITRARRQLFLSYGLSRASGGRPREASSFLAGL 564

Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611
            +              + R          G TLS   S+ +       +N  E  ++  R
Sbjct: 565 GFAGPVGGPAPKPKTKKKRSSSRSICRVCGATLSDGRSRKLGRCEGCPSNMDE--ELFER 622

Query: 612 LIDGETVKPKIEKSSTLFILG 632
           L                 +  
Sbjct: 623 LRQWRKETATRAGVPAYVVFT 643


>gi|221636342|ref|YP_002524218.1| nerd domain protein [Thermomicrobium roseum DSM 5159]
 gi|221157844|gb|ACM06962.1| nerd domain protein [Thermomicrobium roseum DSM 5159]
          Length = 674

 Score = 38.0 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 48/433 (11%), Positives = 100/433 (23%), Gaps = 39/433 (9%)

Query: 3   NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62
              P + T  P S   + ++  L    L+   R                 T+   + L  
Sbjct: 189 QDGPFLVTGPPGSG--KTLLGLLAISPLLARARQRGNPQ---PRALFVTFTRTLARTLER 243

Query: 63  EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
                      +    K+L  +V +     LL        +    R     R +     +
Sbjct: 244 LARVHLSAADRLAVAFKTLDSLVNDLAPDALLADGPAVVALVAQARQRAFTRPLSPDPAR 303

Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182
              +   L+  + L +       I L + L  + +     ++    L  L   +    W 
Sbjct: 304 DRKLAGSLHRITNLYIQEEIEEVI-LGRGLRTL-EEYRAADRTGRQLP-LNANQREAIWC 360

Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242
                     +  ++ L E         +        +         +++          
Sbjct: 361 --------VYETLSDLLREQGLFLREERRQLAWETVRQDPAVTRYDVVVVDEVHDLSLTA 412

Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302
            RL+  +  HP   ++L   D            +          +      +     +  
Sbjct: 413 LRLLHELCRHPEALLLL--GDTGQSIYTRTVRWDLLRAEFPGLVSIELSTGHRCPPEIAA 470

Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362
                     L +   E    +         P    +   D                   
Sbjct: 471 AAEAYRAALPLDDSRGESSAVTHRKRPGRSRPLLVLLSRWDAW----------------- 513

Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422
                   A  +A  LR     +   + L+  ++      +    R      + AG  LS
Sbjct: 514 ----PDALARCLAERLRELRLTSGHAAVLVPTNQLADAASEALWARGFEVKHVRAGQDLS 569

Query: 423 TTLHSSILTSLLN 435
                 +LT    
Sbjct: 570 QGSGVKLLTWHNA 582


>gi|297300244|ref|XP_002805557.1| PREDICTED: plectin-1 isoform 2 [Macaca mulatta]
          Length = 4550

 Score = 38.0 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 66/790 (8%), Positives = 184/790 (23%), Gaps = 45/790 (5%)

Query: 92   DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
                   L    + +++  +LA      + +     K+L       +      A+   + 
Sbjct: 1359 RAEERERLAEVEAALEKQRQLAEAHAQAKAQAEREAKELQQRMQEEVVRREEAAVDAQQQ 1418

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA--DFLKIASKYWTERLVELNASSPVG 209
               I + ++              +            + +++          +   +    
Sbjct: 1419 KRSIQEELQXXXXXXXXXXGQARQAEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGEL 1478

Query: 210  YQIALMRAEAEHL------MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
              +     EAE                +   S     A A L   V      A       
Sbjct: 1479 QALRARAEEAEAQKRQAQEEAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREKQRAL 1538

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
              +   +     E    +  +    +   Q +L       +++ +  +           R
Sbjct: 1539 QAL-EELRLQAEEAERRLRQAEVERARQVQVALETAQRSAEVELQSKRASFAEKTAQLER 1597

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS------DVALIEADNEREEAISIAIA 377
            S+      +     +       + +    ++          +   EA   R +A  +A  
Sbjct: 1598 SLQEEHVAVAQLREEAERRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQ 1657

Query: 378  --LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              L  +  E +K+ A   A R      +    R     ++     L+       L +   
Sbjct: 1658 KSLAQAEAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQE 1717

Query: 436  AIFKLNDFMA---IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
             I    +         L++  LA+        ++ +  LE    +         +++ L+
Sbjct: 1718 LIRLRAETEQGEQQRQLLEEELARLQREAAAATQKRQELEAELAKVRA------EMEVLL 1771

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
              +   ++ +        +  E +      L +     +  L      +       +   
Sbjct: 1772 ASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAA-RLRALAEEAKRQRQLAEEDAARQ 1830

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              +      + +             E   K   +   ++                     
Sbjct: 1831 RAEAERVLAEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRR-------- 1882

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            ++ +  + K +    L  L       L     ++                  +   ++  
Sbjct: 1883 LEEQAAQHKADIEERLAQLRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 1942

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                 E  +G+   + E    ++      + R+  +     +  +              +
Sbjct: 1943 GKAELELELGRIRSNAEDTLRSKEQAELEAARQRQLAAEEEQRRREAEERVQKSLAAEEE 2002

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
               Q             K    +R +     E+           QL  +      +   K
Sbjct: 2003 AARQRKAALEEVERLKAKVEEARRLRERAEQESA-------RQLQLAQEAAQKRLQAEEK 2055

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                   +K+ +         +++  L  +              ++     E+E      
Sbjct: 2056 AHAFAVQQKEQELQQTLQQEQSVLDRLRSEAEAARRAAEEAEEARV---QAEREAAQSRR 2112

Query: 853  DIIWRHLFHK 862
             +       +
Sbjct: 2113 QVEEAERLKQ 2122


>gi|182439869|ref|YP_001827588.1| putative type-I PKS [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178468385|dbj|BAG22905.1| putative type-I PKS [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 1690

 Score = 38.0 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 73/762 (9%), Positives = 156/762 (20%), Gaps = 59/762 (7%)

Query: 131  YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190
            +    L       +A   A                      L+              L  
Sbjct: 946  HKRYWLEPQPVAHSAAPPADRAEARFWEAVERGDLSAVTETLRLADGAG-----LPELLP 1000

Query: 191  ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMS 247
            A   W     E              R  A             +++     ++P     + 
Sbjct: 1001 ALGAWRRNRHEQATVD-AWRYKTAWRPLAPASTAPALAGTWLLVVPEDHVAVPFVDATLR 1059

Query: 248  TVANHPNGAIVLPGLDCHIPTAIWNTI------TEKSTNITSSNTTYSTHPQYSLAKLLD 301
             +      A +LP                      +      S  +    P      L  
Sbjct: 1060 GLEAAGADAHLLPVAAADADRGKLAARLHEAVGDGRDLTGVLSLWSLDGSPLPGSPTLST 1119

Query: 302  FLDIKREDVKRLGNVSNEMY----GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357
                    ++ L +           R  V +    P +        +         + + 
Sbjct: 1120 ATLGTLALLQALADTDLTAPLWCVTRGGVATDDITPAEPVPAELWGMGRVAALENARLWG 1179

Query: 358  DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI--DI 415
               L++   + ++A ++          + +    +   R L RR+  +L           
Sbjct: 1180 G--LVDLAPDTDDATAVTEITAALRRTDAEDQIAVRGGRPLGRRMVRDLAADRTPARDYR 1237

Query: 416  SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475
              G  L T    ++   L   + +      + T  + P              +  L  + 
Sbjct: 1238 PRGTVLITGGTGALGKLLARWLARNGAEHLVLTSRRGP------DAPGADALEAELTGLG 1291

Query: 476  LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535
            +R      DI D   L       + +   V       +  D      L   + +  +   
Sbjct: 1292 VRVTIAGCDIADHDELAALVTRVEADGPPVTAVVHTAAHIDLGPL--LETTVEEFESAYH 1349

Query: 536  TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595
                   +        D     +                         L+       +T 
Sbjct: 1350 AKIRGARNLDRVFEGHDLDAFVLYSSIAAFWGSGLHGSYAAANAHLDALAQQRRARGQTA 1409

Query: 596  SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655
            + +       +DI            +  ++  L  L       +      +   +  V  
Sbjct: 1410 ASLAWGVWRPVDIQESYAAERMAISERAQAQGLPFLEPDL--GIEAFRQAVDHDDVNVAL 1467

Query: 656  KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715
             N   + F+S    +       +    +AA                  R        +  
Sbjct: 1468 ANIEWDRFVSLFTMARPTRLLDDLPEARAAL----------------ERIAESEKRTTDD 1511

Query: 716  LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775
             +    L         ++  +  LD  R+                          S + +
Sbjct: 1512 AEESHTLREKLSALTAEEADRHLLDLVREHAAAALGHDGPGEVLPARAFRDLGFESLTAV 1571

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
            +       A   R    L F            R  L  +             T E  H  
Sbjct: 1572 ELRNRLSRATGLRLPAGLVFDHPTPAAVAVLLRAELLDD----------GPATTEALHAQ 1621

Query: 836  KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
               +++   + +  P            +   +   E      
Sbjct: 1622 LDRLETVLARLDTDPADRAPVTARLRALLDRWTADEGAQDDG 1663


>gi|87302159|ref|ZP_01084984.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
 gi|87283084|gb|EAQ75040.1| transcription-repair coupling factor [Synechococcus sp. WH 5701]
          Length = 1187

 Score = 38.0 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 90/863 (10%), Positives = 200/863 (23%), Gaps = 57/863 (6%)

Query: 18  FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST--IL 75
              ++  L    L          P  L          RA + L +  +   G +    I+
Sbjct: 3   LTALVRQLEQVPLTGEVLERSGRPERLR----LSGAGRAARALITSALARRGGRPLVVIV 58

Query: 76  PI-------IKSLGDVVEEKFTADLLLSYNLNPPVSNIQ-----RLLELARLILIWRNK- 122
           P           L  +             +   P          +L  L  LI       
Sbjct: 59  PTLEEAGRWAALLELMGWPTAQLYPTSEGSPYEPFDPTSEITWGQLQVLGELIDGSGRSW 118

Query: 123 LPDIIKDLYPESPLSLPISPANAIWLA---------KNLADIIDIIETEEKKW-EDLHAL 172
              I+       P   P +   A  L+         + LAD +  +  E     E   + 
Sbjct: 119 AGAIVATERALQPHLPPPAALAARCLSLRKGSSVDLEELADTLTRLGYERVPTIEQEGSW 178

Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232
                 +     +  L +  +++ E L +L    P   +  L   EA  L     GP+I 
Sbjct: 179 SRRGDIVDVFPVSAELPVRLEFFGEDLEKLREFDPATQRS-LDAIEAVRLTPTGYGPLIA 237

Query: 233 AGSTGSIPATARLMSTVANH--------PNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
                S+P     +              P G   L GL    P ++ + +   +      
Sbjct: 238 DALRESMPEALTELLASEALEQLLEGGTPEGMRRLMGLAWEQPASLLDYLPGATLIAVDE 297

Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL------PPDTSD 338
                 H Q       D        +       +     +  ++++              
Sbjct: 298 RRQGLAHGQQWFDHASDHHAEVSAPLPADTLPPSLHRPVAAALAEADRFAGFDLAELHES 357

Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
            R+ +  +     +    +    + A  +  +     + L  +  +  +  AL+      
Sbjct: 358 DRHPNAFDLSSRPVPAHPNAFGRLAALVKGYQQEKARVWLVSA--QPSRAVALL-----E 410

Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
                        +      +    T  +  L               +  L         
Sbjct: 411 EHDCPARFVPNPHDFPAIERLIEQATPVALKLRGTAELEGLQLPAWRLVLLTDREFFGQH 470

Query: 459 --FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516
                 Y+ R + A             D +  ++  + R    +        +  L  + 
Sbjct: 471 SLAASGYVRRRRKAASRTVDPNKMRPGDFVVHRNHGIGRFLRLEKLAISGESRDYLVVQY 530

Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576
            +  + +    L  +       T+       ++   WT+      + V       +    
Sbjct: 531 ADGLLRVAADQLGSLGRFRA-STDSPPELNRMAGVAWTRAKERARKAVRKVAMDLVKLYA 589

Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636
             ++            +             D +  + + +    K E    L        
Sbjct: 590 ERQQAAGFPFPADGPWQGELEDSFPYEPTPDQVKAIAEVKRDMEKPEPMDRLVCGDVGFG 649

Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
           +       +   +  G      A    L++     L+ + A   +  A  +       R 
Sbjct: 650 KTEVAIRAVFKAVTAGKQCALLAPTTVLAQQHWRTLSERFAPYPLKVALLNRFRTTAERK 709

Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756
            I            + +  L              + +  +  ++   K+    K      
Sbjct: 710 TILDGLRDGTVDVVVGTHQLLSKGTSFEKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLT 769

Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816
               P       + S      LI  P  +       L  +                    
Sbjct: 770 LSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLAALDEEAVRSAIR---QELDRGG 826

Query: 817 TELIKKRINKNTPEINHLMKQII 839
                    +   E+   +++++
Sbjct: 827 QVFYVVPRVEGIEEVAGQLREML 849


>gi|28199809|ref|NP_780123.1| chromosome segregation protein [Xylella fastidiosa Temecula1]
 gi|182682561|ref|YP_001830721.1| chromosome segregation protein SMC [Xylella fastidiosa M23]
 gi|28057930|gb|AAO29772.1| chromosome segregation protein [Xylella fastidiosa Temecula1]
 gi|182632671|gb|ACB93447.1| chromosome segregation protein SMC [Xylella fastidiosa M23]
 gi|307578841|gb|ADN62810.1| chromosome segregation protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 1167

 Score = 38.0 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 47/559 (8%), Positives = 114/559 (20%), Gaps = 28/559 (5%)

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA-----ISIAIA 377
           R   +       +     +    E     +    +DV  + A   R E        ++  
Sbjct: 257 RLQQLLAEQREAEMRIETSRVRREESAEALATAQADVYQVGATLARIEQQIQHQREMSQR 316

Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
           L  + DE +K+   +T            L               +      +L       
Sbjct: 317 LHKARDEAQKQLIDLTRHMGDDAATLAVLREAVE----------NNEPQLHVLREQSEFK 366

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                    A             E   +     +E   +          + +  +L    
Sbjct: 367 QDALRDAEAALTDWQQRWDSHNRETSEASRAGEVERTRVDYLDRQTLDAERRRDLLLAER 426

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              +   +     ++  + +     L     Q      T    ++      +     +  
Sbjct: 427 AGLDLDALAEAFEQIEVQYETQKAALDGLNDQLEQRKQTLADVQHQQRTAQTELADVRKH 486

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               +               +E+G  ++ L +  + + + +             L     
Sbjct: 487 AQTARGRLSSLETLQQAALGQEQGAAMTWLQAHGLSSAARVGERIRVESGWENALESALG 546

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA-KNPFLSRVMQSDLNLKT 676
              +         L    + L      ++      +    T+        V    L    
Sbjct: 547 HMIEGVLVDDPQTLVEALNSLNEGHIALVADTQTQIQVAPTSLAAKVQGPVAIRRLLTHL 606

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                  AA   +   G    + TR+            WL+              ++  Q
Sbjct: 607 HGAEDLVAARALQATLGEGDWVMTRNGECLGEG-----WLRVSRSGAAEQGALLRERDIQ 661

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                   L     +              +       + ++       +  R + +L   
Sbjct: 662 TLRAQIETLQEREAELE------HRLTHFRDHLLMAEQHREDAQRQLYIAHRGVSELAGQ 715

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN-LPPHIDII 855
                      RG + H              + +     +  +D    +   L      +
Sbjct: 716 RQAHHGKLEASRGRIQHIEAEIAQLLETLDTSRDQARTARATLDEAVTRMGDLESQRQAL 775

Query: 856 WRHLFHKISHSFLEHEEKI 874
                          E   
Sbjct: 776 HAERQQLNLTRDQAREAAR 794


>gi|188576727|ref|YP_001913656.1| putative secreted protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188576918|ref|YP_001913847.1| putative secreted protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521179|gb|ACD59124.1| putative secreted protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521370|gb|ACD59315.1| putative secreted protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 1371

 Score = 38.0 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 57/670 (8%), Positives = 162/670 (24%), Gaps = 46/670 (6%)

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
                +R          K      GS  +  A   L  T A               + + 
Sbjct: 271 RLENALRDARARGDALAKAVFFGRGSAQATEAEQALARTNAQIDQLQSAYAQARDALQSD 330

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             ++ T    + T ++   +   Q  +  L   L    + +      +      +  + +
Sbjct: 331 QASSSTSAPASRTLASHLAAEQSQ-EIQALRTQLARDEQMLSLQSVHAERCQRNARRLQE 389

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
             +  + +  +           + +    V+ +EA +   +      A+  +  ++    
Sbjct: 390 RLVQVEATLKQAQHSSRVNTKELWQQDHTVSALEAADGDMQ-----RAVETAAAQSPADE 444

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A    D ++A  +   L             P+S  +  +    L                
Sbjct: 445 ARRAPDDSVAEAMAALLD-ALPGFREDTIGPMSRQVLRTWADGLHR-------------- 489

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
                 +         +  +AL +     +  S       + VL R+   +    +P  Q
Sbjct: 490 ------RSAAFGTDALQPVDALNIALQALSIASQSDATTAANVLQRLGEVQLRELIPPPQ 543

Query: 510 SRLSEEDKELAVLLVDHILQCIT-----PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
              + E       +   +   ++      ++ +   +  T       +  ++ +     +
Sbjct: 544 VSNAAEAVPPMEAVTTCVGLLVSVPRGMQVLLHMLREEPTSPAREWLEAAQVHLRASHRL 603

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
            L    +     +  + +  +            +++           + +G         
Sbjct: 604 ALTPDAEQAERAWLADAQMGARHAVHGATPLQGLQSATDAQRSAFHAIRNGYETTRAGSP 663

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
            + +     + ++         G      +          +         +  + +   A
Sbjct: 664 YARVNASLQMFAQWAVAGGQTRGKRALNPFNALKLGMKVGASEALPTAGRRANDAFREAA 723

Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
            H        RH+  T     +                           +   +     +
Sbjct: 724 GHLSNWLVARRHIQMTCGQLPSQDELAMQAL--------------AECVQWLPHEQSATE 769

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
           L +T K       +     ++   + S ++ +Q      A+ +  +          +   
Sbjct: 770 LIFTAKVLAEIEQRARELQDSVTASLSTTDARQPAACHPAIASAWVALRTSRMRLPETLR 829

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
              RG L H I              E+  + +          +   H     R    +  
Sbjct: 830 LIQRGLLDHAIQPNDTPAGAAPLDKELASVARNHFHQAVGNASRFLHEGDTSRVRSPRAL 889

Query: 865 HSFLEHEEKI 874
            + L +  + 
Sbjct: 890 FACLRNVMER 899


>gi|116695626|ref|YP_841202.1| non-ribosomal peptide synthetase [Ralstonia eutropha H16]
 gi|113530125|emb|CAJ96472.1| Non-ribosomal peptide synthetase [Ralstonia eutropha H16]
          Length = 3094

 Score = 38.0 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 77/743 (10%), Positives = 152/743 (20%), Gaps = 27/743 (3%)

Query: 139  PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198
            P+SP     L  +L D  +     +   E    L   +    W    D   I    +   
Sbjct: 1205 PLSPLQEGLLFHHLRDGGNGAYVNQLVLEIDGPLDPARMAAAWQALLDAHPILRTTFIA- 1263

Query: 199  LVELNASSPVGYQIALMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
              E          +         +   +G  GP +         A        A  P   
Sbjct: 1264 PGEAGCGDRALQCVHARATLPVAVEDWRGEDGPALAERLAAWCRADRARGFDPAALPLMR 1323

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
            + L          +W+          S         +Y+             D       
Sbjct: 1324 LALLRTGEQGWWLVWSRHHLIVDGWGSVQLLDEALARYADPAHAPAPRRPYRDYIAWLAA 1383

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376
                  R     ++F       +           +      D+ L    +    A++ A 
Sbjct: 1384 QPA-TARQAFWREAFAGLPGPTVLPGIAPAAANHSAAPLCRDLVLPAGLDSSLRALAAAH 1442

Query: 377  ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS---TTLHSSILTSL 433
             + ++         ++         V    +         A   L     TL   +    
Sbjct: 1443 RVTLNTVMQAAWGIVLARHCGSDDIVFGVTSAGRPPGLDGAERMLGVFINTLPLRLRPRG 1502

Query: 434  LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493
              A+         A +           E              L   +N  D+ D    V 
Sbjct: 1503 PLAVTDYLQATQQAGVAMREFEHAALAEIQAQAGAGGALFDTLMVFQNLPDLNDRAREVA 1562

Query: 494  DRIATQ----------------KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537
                 Q                 +      +       +       +D     +  L   
Sbjct: 1563 CLRLRQHDNIEQTHYGLTLEVMPDRRFTVRFTCDAGRVEAGRLAQWMDAYAAALASLAEG 1622

Query: 538  KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597
              +  +       +           +  + +     +       +  +     +   G  
Sbjct: 1623 AAHVGAVDLLDPATHTRLQAWGASDDTSVSQAALHDDYVQRVACRVAAHPERVLARCGDA 1682

Query: 598  IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657
                   W       + G      + +   + +L       L     IL      V    
Sbjct: 1683 ALTYGDWWQRAGR--LAGGLRSAGVAQDDVVAVLLPRGLDWLVALAGILRAGAAWVPLDV 1740

Query: 658  TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717
            +       +V+      +      G AA       G R L    +          S    
Sbjct: 1741 SHPPARWQQVLAQARPAQVLTDAAGAAALAEAGIAGARTLAAVEASAAGTTALHTSSHPA 1800

Query: 718  RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777
            +L  +  T     + K            +   K       +     +  P  +  S  + 
Sbjct: 1801 QLAYVLFTSGSTGVPKGAMVTRAGM-LNNMLAKVVPLGLGEGDVIAQTAPPCFDISVWQA 1859

Query: 778  LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837
            L    +      +                 RG      +  L++  ++    E       
Sbjct: 1860 LAAPLFGARVEVVADDVVRDPSALTALLAQRGVTLFEPVPSLLQAVLDCQAAEGRDAPLP 1919

Query: 838  IIDSHFEK-ENLPPHIDIIWRHL 859
             +       E LPP     W   
Sbjct: 1920 ALRWVLPTGEALPPATARAWFGR 1942


>gi|26990967|ref|NP_746392.1| chromosome segregation protein SMC [Pseudomonas putida KT2440]
 gi|24985991|gb|AAN69856.1|AE016624_7 chromosome segregation SMC protein [Pseudomonas putida KT2440]
          Length = 1162

 Score = 38.0 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 55/591 (9%), Positives = 153/591 (25%), Gaps = 19/591 (3%)

Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
           +   L +L      +     K +     L      A  + LA+ LA     +  EE +  
Sbjct: 401 QQARLQQLETSLERQAERQRKLVEEREQLGSDPQDAAMLELAEQLAS--SEMLLEELQLC 458

Query: 168 DLHALKNEKYGMWWLLAADFLKIA----SKYWTERLVELNASSPVGYQIALMRAEAEHLM 223
           +   ++  +     L  A   +       +    RL  L A      +     A+  H  
Sbjct: 459 EEQVIERLESAREQLQQATQAQQQAQGDLQRLGGRLASLEALQQAALEPGAGAAQWLHGQ 518

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283
              + P +  G          + + +     GA +   L        +  + +    +  
Sbjct: 519 GLEQQPRLAEGLRVEPGWELAVETVL-----GADLQAVLVDDFNDLDFAGLEQGELRLLL 573

Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343
           +    +T P   L K+   +D+     +                        + D     
Sbjct: 574 AVGAGATLPGSLLEKVEGRIDLAPWLGQVRPVEDLAQALEQRGSLGEGQSLVSRDGYWVG 633

Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403
               ++    +    V  +    E E      +    +L++  ++   +   +      +
Sbjct: 634 RHFLRVRRGGEAEGGV--LARGQEIERLGQEQLEQEAALEQLDQQLQALREQQLDLEEQR 691

Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463
            +L R   + +   G   ++   S           +        + ++   A        
Sbjct: 692 EQLRRRTQDENRLHGELKASLSASRA--RAEQVELRRRRLQEELSELEEQRALEHEQLGE 749

Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523
                     +  +  +    +M  +  + + +   +         +             
Sbjct: 750 ARLLLQEALELMAQDTEQREQLMARRDTLRESLDRVRQEARQHKDHAHQLAVRLGSLRAQ 809

Query: 524 VDHILQCITPLV--TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581
            D   Q +  L     +  +     +L++ +           +     R++         
Sbjct: 810 HDSTRQALERLEQQAARLTERQEQLSLNLEEGEAPQEELRLKLEELLERRMSVDEEMRLA 869

Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641
           +       + +      +  A +   ++   ++   ++ +        +   L +   + 
Sbjct: 870 RLHMDEADRELRDAEKRRTQAEQQAQLLRGQLEQLRLECQGLDVRRKTLQEQLLADGYDL 929

Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEM 690
             ++     E        +   L   +Q    +NL   E+Y  Q+     +
Sbjct: 930 QGVLATLEAEASEQGTEQELEQLEARIQRLGAINLAAIEEYEQQSERKRYL 980


>gi|326771907|ref|ZP_08231192.1| ATP-dependent DNA helicase [Actinomyces viscosus C505]
 gi|326638040|gb|EGE38941.1| ATP-dependent DNA helicase [Actinomyces viscosus C505]
          Length = 717

 Score = 38.0 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 58/223 (26%), Gaps = 19/223 (8%)

Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610
           +  T       + V   E             +      + ++     +       +D   
Sbjct: 448 ATLTGDLGQDARTVLSREGWSEEPPAPRGAVRERWDALNALVALADEMAQTRGADLDAFH 507

Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670
             +              + +     ++ L +D +IL G+ EG+ P + A+        + 
Sbjct: 508 TELRERADAQNAPTVEGVTLSSLHAAKGLEWDAVILAGVCEGLLPISLAEGQAAIEEER- 566

Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTI---ASRWLQRLLVLGGTD 726
                            +      R  LI + +   N         SR+L  L   G   
Sbjct: 567 --------------RLLYVGVTRAREHLIISYARARNAGGRASRKPSRFLDGLWPTGHGS 612

Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769
              +  +  Q   + +R+     +  +  R           R+
Sbjct: 613 RDASRHQGRQSAKERSRQSAADFEANNDPRTIALFEELRAWRS 655


>gi|257092164|ref|YP_003165805.1| hypothetical protein CAP2UW1_0525 [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257044688|gb|ACV33876.1| hypothetical protein CAP2UW1_0525 [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1570

 Score = 38.0 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 93/839 (11%), Positives = 202/839 (24%), Gaps = 53/839 (6%)

Query: 78   IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137
            + +L DV ++        +  + P         ++ +L          I  +      + 
Sbjct: 347  VVTLRDVGQDWLRDYAFPADQVTPLALGGLDRDDIRQLFAGLGAAGARIAGNPVLLEQIV 406

Query: 138  LPISPANAIWLAKN---LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194
               + A+A  L  +   +  + + +   E   E +                  L      
Sbjct: 407  DRAAYADAPGLGADPFYVRFLAEDVAAAEVTPEQIADQPRG------------LDAYLDR 454

Query: 195  WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH-- 252
            W +++V+L   +P+      + A    + +G    I  +            + +      
Sbjct: 455  WWKQIVQLAGDAPLRDLFGTLAAALGPIARGDLEAINASLRDDWAGDFFEQVLSRVRRLV 514

Query: 253  ---PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309
                 G   L         A    I + +             P++     L  L     +
Sbjct: 515  RRDGAGRYGLAHPRLRQYVADPRRIGKINDYRGRVLEYCRRWPEHRSPYALTCLGTHLAE 574

Query: 310  VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369
               L  +       + + S  +L    S +     L   I  + K    +AL   D  R 
Sbjct: 575  AGHLDEL-------ARLFSSEWLAAQWSILHTWAALIADIERVAKAL--LALPAPDYPRI 625

Query: 370  EAISIAIA-LRMSLDENKKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPL 421
              + +A    R  +     +  +    +  + R    L        R    +   AG  L
Sbjct: 626  LGLVVARQTARELMLGFPDEVYVAWTAQGESERALACLGALGKTGARAINPLLAVAGKLL 685

Query: 422  STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481
                  +       A   L   +    LV+    +        +       L  LR  + 
Sbjct: 686  EVHREGAD-DHAEQAAELLQQVIDQLPLVRRTNEQHQIVSALAALLPRERGLPELRRLQL 744

Query: 482  SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541
                ++      D +        +    +  S  D+E A  L+D     +  +       
Sbjct: 745  LRQAVEFAERADDLVLRAAALGSLASALAASST-DREQARPLLDRARTALAGIDFPADRA 803

Query: 542  NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601
                  L             +   L    K            L  L  +        +  
Sbjct: 804  FVFASQLPALQILAPATVLPELTALVNQGKALLQHGSLAKSPLIRLLERWRPGDGEQRQE 863

Query: 602  AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
             I  +  +  L    TV      + ++ +              +   L E  W  +  + 
Sbjct: 864  TIALLCRLAALYLDTTVADYAGVALSVIVPDL----CWLGRVDLASDLVERCWAADAVEG 919

Query: 662  PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
              +       L     EK          + +   H +             A         
Sbjct: 920  ARIVAYAIDTLEELLPEKVSAWLVAAAPLTDPAHHDMPINRELFTAAVANARAATGDWHG 979

Query: 722  LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
                       +R    +   R+L   ++    +R         +    +    +   ND
Sbjct: 980  ALELAATLRGSERADALVGLLRRLGAASQVEATQRESLV----DEILALAGDADEAARND 1035

Query: 782  PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841
              A       ++       +      + T         + +    +  E+  L+   + +
Sbjct: 1036 GMARVVAVAAQVLGGAAGSRGEALLAQATAL------CLARLPEGDLDELRRLLAVALHA 1089

Query: 842  HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900
                      +  +        + +FL             +V +  +   E  G  L G
Sbjct: 1090 DGASAEALRVVSGMTWVDGVAATLTFLAQAMAADPGRRDAYVEVLIEQLAERAGAALYG 1148


>gi|170722765|ref|YP_001750453.1| chromosome segregation protein SMC [Pseudomonas putida W619]
 gi|169760768|gb|ACA74084.1| chromosome segregation protein SMC [Pseudomonas putida W619]
          Length = 1162

 Score = 38.0 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 65/722 (9%), Positives = 167/722 (23%), Gaps = 22/722 (3%)

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
            +   L +L            K       L         + L++ LA    ++E  +   E
Sbjct: 401  QQSRLQQLEASLERMAERQRKLGEERDQLGADPQDGAMLELSEQLAASEMLLEELQLSEE 460

Query: 168  DLHA--LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225
             +                A    +   +    RL  L A      +  +  AE       
Sbjct: 461  QVVERLEGVRAQLQQATQAQQQQQGDLQRLGGRLASLEALQQAALEPGVGAAEWLRGQGL 520

Query: 226  TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
             + P +  G          + + +       +V               +           
Sbjct: 521  EQRPRLAQGLRVEPGWELAVETVLGADLQAVLVEDFSGLDFAELEQGELRLLVAGQEGPR 580

Query: 286  TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
               S   +      L     +   V+ L     E  G     S               + 
Sbjct: 581  RPGSLLDKVEGHTDLAPWLAQVRPVEDLAQALAERAGLGEGQSLVSRDGYWVGRHFLRVS 640

Query: 346  ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405
                           +     E+ E  +    +   L   +++   +   R   RR   E
Sbjct: 641  RGGESQGGVLARGQEIERLGQEQLELEATLEQMEQQLQALREQQLGLEEQREQLRRRTQE 700

Query: 406  LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465
             +R    +  S          S+          +        + ++   A          
Sbjct: 701  ESRQHGELKAS---------LSAGRARAEQVELRRRRLQEELSELQEQRALEHEQLGEAR 751

Query: 466  RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525
                    +  +  +    +M  +  + + +   +         +              D
Sbjct: 752  LVLQEALDLMAQDTEQREQLMARRDTLREGLDRIRQEARQHKDHAHQLAVRLGSLRAQHD 811

Query: 526  HILQCITPLV--TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583
               Q +  L     + ++     +L++ +           +     R++       + + 
Sbjct: 812  STRQALERLELQAARLSERQEQLSLNLEEGEAPLEELRLKLEELLERRMSVDEEMRQARL 871

Query: 584  LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643
                  + +      +  A +   ++   ++   ++ +        +   L +   +   
Sbjct: 872  HMDEADRALRDAEKRRTQAEQQAQLLRGQLEQMRLECQGLDVRRKTLQEQLLADGYDLQG 931

Query: 644  LILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEM------ANGTR 695
            ++     E        +   +   +Q    +NL   E+Y  Q+     +           
Sbjct: 932  VLATVEAEASEQGTEQELEQIDARIQRLGAINLAAIEEYEQQSERKRYLDAQDADLVEAL 991

Query: 696  HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755
              + +   + +       +     +  G    F  +   G  YL+ T +    T      
Sbjct: 992  ETLESVIRKIDKETRNRFKDTFDQINAGLQALFPKVFGGGSAYLELTGEDLLDTGVTIMA 1051

Query: 756  RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815
            RP           +     +  L    +A++         +       D  + G     +
Sbjct: 1052 RPPGKKNSTIHLLSGGEKALTALAL-VFAIFKLNPAPFCMLDEVDAPLDDANVGRYARLV 1110

Query: 816  IT 817
              
Sbjct: 1111 KE 1112


>gi|167516344|ref|XP_001742513.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779137|gb|EDQ92751.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1061

 Score = 38.0 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 75/749 (10%), Positives = 168/749 (22%), Gaps = 34/749 (4%)

Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
            +  L+ +        AA   +I     +   ++               A A      T 
Sbjct: 158 RVRNLEQDLTAAEESRAASLRQIQELQKSNGQLQQGTLDLRLQLEQARSASASKTTAPTI 217

Query: 228 GPIIIAGSTG--SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285
            P+  A  T   S  AT  + +     P     +P     +   +      +        
Sbjct: 218 RPVSAATQTDPQSTTATDTVPTDATTLPAAMPAIPQTQEPVQAEVQRRHEAELQAHELRW 277

Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345
                  Q   A L+D ++ + + ++     ++E          S     +  +  +   
Sbjct: 278 QEQWNRAQKEHALLIDAMEKELQQLRLQLYSADEAPRPLAPSRTSQASLTSLHLSGSGEG 337

Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSAL----------ITAD 395
           E   P                  +    +      +     +++            +T  
Sbjct: 338 EGTAPAPVHRLQQENEQLRRTTTDLQQQLVRLQAEANRGAGQRAVAKGALAGLAHTVTGS 397

Query: 396 RNLARRVKLELTRFGINIDISA---GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452
             L       L      + ++       L        L +  +A+    D  + +  V  
Sbjct: 398 SLLDAGTADRLALEDSVLRLTRHVQRYGLRDCPEVVRLQARCSALQAELDQRSPSVPVND 457

Query: 453 PLAKFGFPEKYLSRAKNALEL--------------VALRGNKNSYDIMDLKSLVLDRIAT 498
                      L R +  L                      + +   ++L + +   ++ 
Sbjct: 458 ARLHGEVARPLLVRLEQHLHQLGRLAQVPGFEEEAPTFSETEPTPTDLELATRLGALVSQ 517

Query: 499 QKNNTHVPHWQSRLSEEDKE-LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
                     Q   +       A      +     PL +       T    +      L 
Sbjct: 518 AGRIKLTLQTQQLSASAPVPVPATTPSQPLTHAEEPLASGAHRGPRTSSPKASRHEATLA 577

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
                   L   R   ++   +E   L       +E         ++        +  E 
Sbjct: 578 ELTANLHELQRQRDADSVRHRQELADLREQAEGRMEQQHVALLRQLDTATAEHSRLQDEL 637

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677
           ++        L       + L      +   +N  +      +  F   + +        
Sbjct: 638 LQ----AHEELARAEREGTSLAQRLEGMQALMNSQLKAAEDMERAFGQELQRLRAGAAAP 693

Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737
                QA  D   +         R           S  LQ           D      + 
Sbjct: 694 CSSCTQARRDLATSADELEDYRDRLEVAEQEVAALSLRLQLAQTSAEPAVTDESTNHAEV 753

Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797
            L   R+     +              A       ++  QL +    + A          
Sbjct: 754 ELAALRQEREEERGQWEMERAELQATAAADTQRLRNQAAQLSDTEARLEAALRAMSAAAE 813

Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857
            +++   R    T+        ++ R  +   E     +++ +   E E        +  
Sbjct: 814 DYEQLEQRYHEATVQGQTARAQLQAREEEGQRERMAHRRRVAELEDEAEAWAVRGRELEG 873

Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIP 886
            L    + +  EHE           +   
Sbjct: 874 QLAQLEAAAQREHERARDLDQRAHALEAE 902


>gi|122879198|ref|YP_201182.6| hypothetical protein XOO2543 [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1388

 Score = 38.0 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 57/670 (8%), Positives = 162/670 (24%), Gaps = 46/670 (6%)

Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269
                +R          K      GS  +  A   L  T A               + + 
Sbjct: 288 RLENALRDARARGDALAKAVFFGRGSAQATEAEQALARTNAQIDQLQSAYAQARDALQSD 347

Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329
             ++ T    + T ++   +   Q  +  L   L    + +      +      +  + +
Sbjct: 348 QASSSTSAPASRTLASHLAAEQSQ-EIQALRTQLARDEQMLSLQSVHAERCQRNARRLQE 406

Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389
             +  + +  +           + +    V+ +EA +   +      A+  +  ++    
Sbjct: 407 RLVQVEATLKQAQHSSRVNTKELWQQDHTVSALEAADGDMQ-----RAVETAAAQSPADE 461

Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449
           A    D ++A  +   L             P+S  +  +    L                
Sbjct: 462 ARRAPDDSVAEAMAALLD-ALPGFREDTIGPMSRQVLRTWADGLHR-------------- 506

Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509
                 +         +  +AL +     +  S       + VL R+   +    +P  Q
Sbjct: 507 ------RSAAFGTDALQPVDALNIALQALSIASQSDATTAANVLQRLGEVQLRELIPPPQ 560

Query: 510 SRLSEEDKELAVLLVDHILQCIT-----PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564
              + E       +   +   ++      ++ +   +  T       +  ++ +     +
Sbjct: 561 VSNAAEAVPPMEAVTTCVGLLVSVPRGMQVLLHMLREEPTSPAREWLEAAQVHLRASHRL 620

Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624
            L    +     +  + +  +            +++           + +G         
Sbjct: 621 ALTPDAEQAERAWLADAQMGARHAVHGATPLQGLQSATDAQRSAFHAIRNGYETTRAGSP 680

Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684
            + +     + ++         G      +          +         +  + +   A
Sbjct: 681 YARVNASLQMFAQWAVAGGQTRGKRALNPFNALKLGMKVGASEALPTAGRRANDAFREAA 740

Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744
            H        RH+  T     +                           +   +     +
Sbjct: 741 GHLSNWLVARRHIQMTCGQLPSQDELAMQAL--------------AECVQWLPHEQSATE 786

Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804
           L +T K       +     ++   + S ++ +Q      A+ +  +          +   
Sbjct: 787 LIFTAKVLAEIEQRARELQDSVTASLSTTDARQPAACHPAIASAWVALRTSRMRLPETLR 846

Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864
              RG L H I              E+  + +          +   H     R    +  
Sbjct: 847 LIQRGLLDHAIQPNDTPAGAAPLDKELASVARNHFHQAVGNASRFLHEGDTSRVRSPRAL 906

Query: 865 HSFLEHEEKI 874
            + L +  + 
Sbjct: 907 FACLRNVMER 916


>gi|85816315|gb|ABC84471.1| NigAVII [Streptomyces violaceusniger]
          Length = 4787

 Score = 38.0 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 49/610 (8%), Positives = 121/610 (19%), Gaps = 24/610 (3%)

Query: 294  YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353
             ++   ++ LD      + L     +    ++    S LP  ++      +L        
Sbjct: 4159 AAVHATVEALDAHGAAHEVLSIDGADARRDAIAPLLSQLPDGSTPEGILSLLALDRTPHP 4218

Query: 354  KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413
               +    + A     +A+  A  +       +   A   AD               +  
Sbjct: 4219 DHPAVPTGLAATAALVQALGEAPLIAPLWCVTQGAVATNAADPLPHPHQAQIWGMGRVAA 4278

Query: 414  DISAGI--PLSTTLHSSILT--SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469
                 +   L      +     + + A+           +    LA+             
Sbjct: 4279 LEHPRLWGGLIDLPAVADARTPARIAAMLVPGQPEDQVAIRSTVLARRLEG-----AVCP 4333

Query: 470  ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529
                 A R    +        L                     S  D   A  L   +  
Sbjct: 4334 DTAPTAWRPAGTTLITGGTGGLGAHVARWLARQGAPHLHLVSRSGPDAPGAAQLAQDLDD 4393

Query: 530  CITPLVTYKTNKNSTCGNLSISDW--TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587
                +     + +       + D    +  +T + +                    +   
Sbjct: 4394 LGATITITACDVSDRAALQRLLDTIPAEHPLTAVVHAAGLPENTPLAELDLPGIDAVLRP 4453

Query: 588  FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647
             +        +         ++           +    +         +       L   
Sbjct: 4454 KALAAALLHELTEELDLSAFVLFSSGAAAWGGGRQPSYAAANAYLDALAEHRRARGLAAT 4513

Query: 648  GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE-- 705
             L    W      +   +        ++  +  +  A+    + +G   +       E  
Sbjct: 4514 SLAWAPWSDAGMASDEAAVDYYRRRGMRPLDTDLAIASLQHALDHGDTTITIADIDWERF 4573

Query: 706  --NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763
                     S  L  L                       R+L   T    ++        
Sbjct: 4574 PAGFTAQRPSPLLSDLAAAASPGPDAAPDATAAMSGSLQRQLATGTLAQRHQLLLHHIQT 4633

Query: 764  EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF------HNIIT 817
             A       +        P+       L      H        D              + 
Sbjct: 4634 HAAAILGHPTIDAIPPAQPFQELGFDSLTAVEFGHRLSAATGVDLPPTLVFDHPTPKELA 4693

Query: 818  ELIKKRINKNTPEINHLMKQIIDSHF---EKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874
            + +++R+ +  P     +   +D      E   +              +   +   E   
Sbjct: 4694 DYLRERLVEGEPTSEGHLLSELDRWDSVSEPSAVDEAARRRITGRLRLLLAKWNGTERGT 4753

Query: 875  QSSIEKIFVN 884
            + S     + 
Sbjct: 4754 ERSAAHSELE 4763


>gi|14195008|sp|Q9JI55|PLEC_CRIGR RecName: Full=Plectin; Short=PCN; Short=PLTN; AltName: Full=300 kDa
            intermediate filament-associated protein; AltName:
            Full=IFAP300; AltName: Full=Plectin-1
 gi|7839650|gb|AAF70372.1| plectin [Cricetulus griseus]
          Length = 4473

 Score = 38.0 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 65/663 (9%), Positives = 139/663 (20%), Gaps = 29/663 (4%)

Query: 57   IQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR-------- 108
             + ++ E               +S+ + ++    +           V   +R        
Sbjct: 1320 QRRMQEEVARREEAAVNAQQQKRSIQEELQHLRQSSEAEIQAKAQQVEAAERSRMRIEEE 1379

Query: 109  ------LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162
                   LE               ++    E+      +   A  L + + D        
Sbjct: 1380 IRVVRLQLETTERQRGGAEGELQALRARAEEAEAQKRQAQEEAERLRRQVQDESQRKRQA 1439

Query: 163  EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222
            E +   L      +       A   L+       E    L  +     +   +  E    
Sbjct: 1440 EAEL-ALRVKAQAEAAQEKQRALQALEELRLQAEEAERRLRQAQAERARQVQVALETAQR 1498

Query: 223  MKGTKGPIIIAGSTGSIPATARLMS----TVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278
                +     A          R +     TV      A            A      E  
Sbjct: 1499 SAEVELQSKRASFAEKTAQLERTLQEEHVTVTQLREKAERRAQQQAEAERAREEAERELE 1558

Query: 279  TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
                 +N       Q         L     + ++                          
Sbjct: 1559 RWQLKANEALRLRLQAEEVAQQRSLAQADAEKQKEEAEREARRRGKAEEQAVRQRELAEQ 1618

Query: 339  MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398
                     +    Q+  ++  LI    E E+       L   L   ++++   T  R  
Sbjct: 1619 ELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQREATAATHKRQE 1678

Query: 399  ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458
                  ++      +  S       +  +S   S      + + F  +A           
Sbjct: 1679 LEAELAKVRAEMEVLLASKARAEEESRSTSE-KSKQRLEAEADRFRELAEEAA------- 1730

Query: 459  FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518
                    AK   +L      +   +   + +  L  I+             +  E + E
Sbjct: 1731 RLRALAEEAKRQRQLAEEDAARQRAEAERVLTEKLAAISEATRLKTEAEIALKEKEAENE 1790

Query: 519  LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578
                L +        L        +                  +   L E         E
Sbjct: 1791 RLRRLAEDEAFQRRRLEEQAALHKADIEERLAQLRKASESELERQKGLVEDTLRQRRQVE 1850

Query: 579  EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638
            EE   L   F K     + ++             +  +    +             + R 
Sbjct: 1851 EEILALKVSFEKAAAGKAELELELGRIRSSAEDTMRSKEQAEQEAARQRQLAAEEEQRRR 1910

Query: 639  LNFDTLI--LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696
               + +   L    E    +  A         + +   +  E+   ++A   ++A     
Sbjct: 1911 EAEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQ 1970

Query: 697  LIY 699
               
Sbjct: 1971 KRL 1973


>gi|302184779|ref|ZP_07261452.1| ATP-dependent helicase HrpB [Pseudomonas syringae pv. syringae 642]
          Length = 687

 Score = 38.0 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 28/380 (7%), Positives = 86/380 (22%), Gaps = 10/380 (2%)

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
           + + +         +        R+S             +   +   +  +   +     
Sbjct: 137 IDAGLARVPRFDPGSGMTRLETQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAY 196

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +              +          +W +       +    ++     +     +   
Sbjct: 197 GAAEILQADLAGLALQLARWGVTPAQLVWLDVPPAAAYAQAQDLLVRLEALNNQPGQPPV 256

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
           +         +      +  L     L    L  D   L G  + +       +  L+ +
Sbjct: 257 LTPHGQAMAELPAHPRIAHLLLRGHALGLGELACDVAALLGERDILRGAGADLHSRLTLL 316

Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727
             ++   + A+  + +A       +         +          SRWL  LL L   D 
Sbjct: 317 AGTERAARGAQGGVQRAR----QLSRQYRGYLRGAANSPVSDPDHSRWLGALLALAYPDR 372

Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787
               ++ G               +      +P+  +          E +  +   +    
Sbjct: 373 VAQQRRAGGAEYRLANGRAALFAEADALMKQPWLVIADLGSRQGQREERIYLAAEFDPAL 432

Query: 788 RRILKLDFIPHF----KKDPDRTDRGTLFHNIITELIKKRINKNTPEI--NHLMKQIIDS 841
              +  + +         + +   R      +   +I +       E   +H +  ++  
Sbjct: 433 FDSVLAEQVSTVDQIDWDEREGVFRAERQRKVGELIISREPLTGLDEATRSHALLALVRR 492

Query: 842 HFEKENLPPHIDIIWRHLFH 861
              +          W+    
Sbjct: 493 KGLELLPWTPELRQWQARVA 512


>gi|326315830|ref|YP_004233502.1| TPR repeat-containing protein [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372666|gb|ADX44935.1| TPR repeat-containing protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 1336

 Score = 38.0 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 71/811 (8%), Positives = 182/811 (22%), Gaps = 51/811 (6%)

Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164
            ++R + L R     ++++             + P             A + +    E  
Sbjct: 153 PLERRVLLTRRAAELQDRVLGAAMTRRMAEEATDPREA----------ALLYERAAKEAL 202

Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
              D     + +  +    A      A  ++   +  L + +     + +   E   L K
Sbjct: 203 GQSD--YAGSAELYLLARRATPDADQAKAFYMAAVRTLQSGNRPVEALEMAEREIGPLAK 260

Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284
             +  ++I     +    A     V      + +    D     A             + 
Sbjct: 261 DPQVLLMITQLARAAGKPAVADRYVRQLLRMSWLRQREDDATALAAAVPAVGAMLRPMAW 320

Query: 285 NTTYSTHPQYSLA-----KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
           + +    P           LL    +           +   + R+   + +  P   +  
Sbjct: 321 HGSPEPAPAPVQRYDDGAHLLRPPMLTLPSAAGADMANGWGFRRTAGPAPAPAPAAPAVA 380

Query: 340 RNTDILENKIPNIQKCFSDVALIEADNER--EEAISIAIALRMSLDENKKKSALITADRN 397
                +   +    +    +A       R  ++A  IA A   +  ++      +     
Sbjct: 381 APPVPIPAHLLPYDEKIYGIAFEVFLENRKLDDAWLIAHAAVQARPDDMAWRERLAQVSE 440

Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457
            ++R  + L  + +    +           +   ++L       D  A+   ++  L   
Sbjct: 441 WSQRPGVALQNWLVVAQRTQKE--------AAWQAVLRIAPGQFDDTALVQAIRFQL--- 489

Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517
                        L     R  +    I  L+       A +                + 
Sbjct: 490 -RQRPDDFALIRQLVATYERIGEPQPAIDYLRQHGKIPEAVELLAQLAERAGQPTLALET 548

Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577
              +L     L     +            +  +            +              
Sbjct: 549 WRRLLADPKQLTPERAMRAAVLALTHDRPDEGLGWLEAAQQRQAPSEATAMDFWRLTGQL 608

Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637
            E  +  +               +  ++  +I  L+  + ++     +      G     
Sbjct: 609 AESRQRQALAVQAYRALVGAKDHDRSDYDALIRLLMADQPLEAAKVSALAWEKFG-DPRY 667

Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697
           L++  ++               K    S   +  +          + A  +  A G    
Sbjct: 668 LVDALSVYSSRNQWDAMGPLMRKLEAGSAETRQAVAALREIPEFLRLAGGYYQAQG---- 723

Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757
              R+ R        S     +       F D+        L               +  
Sbjct: 724 DLARARRYYEDGLRTSPDSSEMRQALIWLFIDSNDAVALRTL----LTTQERGWARDEDV 779

Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG-TLFHNII 816
                   Q  +     +++ +    A +    L L           +TDR   L   ++
Sbjct: 780 HDALAAAYQALSLPQVALERYLTPRVAQHQDDFLWLMNYADALDQNQQTDRSWRLRRELL 839

Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF----------HKISHS 866
           +   +            L  Q   + +  E        + R               +   
Sbjct: 840 SREWRAARQAGGEPGKRLTPQQARARWLTEEGLDTTRRVARARLMLTQRPGDPALDVLRE 899

Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897
            L  +   ++ +             ++    
Sbjct: 900 LLRMDTDDRNRMSNAAAETAIGWLQDAGEYT 930


>gi|190576439|ref|YP_001974284.1| hypothetical protein Smlt4656 [Stenotrophomonas maltophilia K279a]
 gi|190014361|emb|CAQ48008.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 1126

 Score = 38.0 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 102/874 (11%), Positives = 242/874 (27%), Gaps = 93/874 (10%)

Query: 116  ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175
                   + D  +       +         +  A+   + +  +       E L  L  +
Sbjct: 246  FDAAERLVSDFAELDGAHQAVVTARRQVETLLPARAYYNDLKEMHRRRGDDEALK-LGVD 304

Query: 176  KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------ 229
             +      A     I ++     + +         + A +    E L +           
Sbjct: 305  SFRESRRQAL----IEARLREMDVRDRGLLGEEAQRRAALDNHTERLAELELQRRQQGGE 360

Query: 230  --IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287
                +    G   A            + A    G +       +  + E++ N       
Sbjct: 361  RIEELEREQGRAEAERDRRQAKREQASLAAQQLGAELPDDAHGFAELVERAQNELQDRQR 420

Query: 288  YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347
             S+        + D L  KR+D +R G V  E+       S    P      R  +    
Sbjct: 421  ASSALD---DAISDRLGGKRDDERRFGEVRAELEAMQRTPSNIPAPMQKLRARLAEETGI 477

Query: 348  KIPNIQKCFSDVALIEADNEREEAISI-----AIALRMSLDENKKKSALITADRNLARRV 402
                +      + +   +   + AI       A++L +        +  +       R  
Sbjct: 478  AEAALPFVGELIQVRSEEQGWQGAIERVLGGFALSLLVDDKHYNDVAEWVNRTHLGMRFT 537

Query: 403  KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462
               + R             +    +  L   L     + +     + ++  L K    E 
Sbjct: 538  YYRVRRNDDAF--------AREPSAKSLLHKLELREHVFE-----SWLRRELGKRFDYEC 584

Query: 463  YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522
              ++    ++    R  +  +     +      +  ++      +   ++   ++E A  
Sbjct: 585  VDAKQLRNVDRGITREGQVKHPGDRFEKDDRSAVGDRRRWILGFNNHDKVGAFERE-AQE 643

Query: 523  LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582
            L   I  C T +   +  ++                    ++   + R         + +
Sbjct: 644  LAKRIASCETDIARLRGQRDRDNERRLACHELVSISWNEIDIAAPQQRLSDIEATLRDLR 703

Query: 583  TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642
              ++  +K+ +    ++A+  +       +        ++E+   +     L+       
Sbjct: 704  EGNADLAKLAKQIDAVRADIEQARRTYEDV--------RVERGQLVKERDRLDRARQQSR 755

Query: 643  TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702
             L+L  L +        +        Q  L+L+T E ++ Q ++       +      R 
Sbjct: 756  ALVLPSLAQEQEAGLAERL-----QEQGPLSLETLEAHMRQVSNALNEQLSSSQQDLNRI 810

Query: 703  LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762
              +        R++Q+     G           + +L    +L+      H +R      
Sbjct: 811  ENQLIGCFR--RFIQQWPEESGDFTVS--VASAEDFLARLERLERDGLPQHEER------ 860

Query: 763  LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822
                 +  S + +  L             +LD +    +     +RGTL       L  +
Sbjct: 861  FFDLLQNQSKNNLLALQRHSAEARKSIGQRLDEVNASLEQV-PFNRGTL-------LTIE 912

Query: 823  RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882
              ++  PE+     Q+ +   +++     +      +  ++ +     E +      ++ 
Sbjct: 913  LSDRRLPEVGEFQLQLREVLSQQQTEQRELAESQFTVLRQLVNRLGSQEGED-KRWRELV 971

Query: 883  VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK----------- 931
            +    +M +E IG+ L       D      V+I  Y++G        QK           
Sbjct: 972  L--DVRMHVEFIGVEL-------DAETRQQVEI--YRSGAGKSGGQRQKLATTCLAAALR 1020

Query: 932  ----LIDPQLSLEAAALKAGSFSQIDCRKVANLF 961
                  D QL   AA +   +F + D    A   
Sbjct: 1021 YQLGGADSQLPSYAAVVLDEAFDKADNEFTALAM 1054


>gi|168465479|ref|ZP_02699361.1| exonuclease SbcC [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195631639|gb|EDX50159.1| exonuclease SbcC [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 1046

 Score = 38.0 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 46/442 (10%), Positives = 102/442 (23%), Gaps = 34/442 (7%)

Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234
            +    W    +  +   +                     +RA A               
Sbjct: 290 RQLRPHWERIQEQTRAVERVRQHSDEVNARLQSAYRLRQRIRACAHRQFTQLN------- 342

Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294
                 AT + + T     +G  V                         +  T  +H + 
Sbjct: 343 ------ATGQRLKTWLAEHDGIRVW----------------RSELAGWRALLTQQSHDRA 380

Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354
            L++    L         L  ++ ++  +++  +++              L+ +I   QK
Sbjct: 381 QLSQWQQQLLSDTRQRDALPPLTLDLTPQALAEARALHTRQRPLRHRLAALQGQILPKQK 440

Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414
             + +    A + +E+A      L       K K+  +   R +  +             
Sbjct: 441 RQAQLQAAIARHHQEQAQY-TQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAH 499

Query: 415 ISAGIP----LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470
           + +G P     STT  +      L          A+   VK    +       L      
Sbjct: 500 LQSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQ 559

Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530
           L+           +   L        AT           +      +E    L     + 
Sbjct: 560 LQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQLSQRH 619

Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590
                     +        I+         L    L          +  E    + ++ +
Sbjct: 620 ALQTQIAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAPEDEASWLNERADEAKIWQQ 679

Query: 591 IIETGSCIKANAIEWIDIITRL 612
                + ++        ++  L
Sbjct: 680 RQTEFADLQMQIDRLAPLLETL 701


>gi|167816866|ref|ZP_02448546.1| val start codon [Burkholderia pseudomallei 91]
          Length = 932

 Score = 38.0 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 43/499 (8%), Positives = 117/499 (23%), Gaps = 27/499 (5%)

Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495
           A+ + N   A+         +         R ++ L        ++  D++ +       
Sbjct: 206 AVVEANRDDALLHRAAERFERRLLDRAQSRRHEHVLVGREFLHGQHDIDLLAVLQREHVD 265

Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV---TYKTNKNSTCGNLSISD 552
             T             L            D +++             +        +   
Sbjct: 266 DRTAARVARALRHLVHLDPVHAAAVREAQDVVVRVRDEQRLDPVVFLHLRRLLAAAAALL 325

Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              L      +V    HR    L  ++            +      +         + + 
Sbjct: 326 RAVLGQRLRLHVARVRHRDHHVLRRDQVFGVQLGRVQLDLRAARIAELRLH-----LRQF 380

Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           +  +   P   + +   I        +  D L+L    E +                  +
Sbjct: 381 VADQRRDPLGPRENVEQIGDLRHHVAIFADDLVLLEAREALQAHLEDFLRLRVGQPVQAV 440

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
            L    +          +A   R ++  R+           R+  R  +L          
Sbjct: 441 ALHAERRTQAL--RTVRVAPAGRRVLGFRAREHVAHERRIPRF--RHQLLLRDRRRRRGF 496

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
                 +D   +     +              A  + ++    + L + P     R ++ 
Sbjct: 497 DDRDELVDVRERDGEAFEHVAALARLAQFVDGAPRQHFAPMRQEALQDLPQIQELRLVVD 556

Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                H ++    +    +  + +       ++ +           +    E   +    
Sbjct: 557 ERDHVHAERVLQLSRLVQVVQHHLGHFAALELDHDAHAALVGFVADVGDALELLLVDELR 616

Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA---------------IESIGIH 897
           D + +     +   F++ +    ++++ + V   A                  ++  G  
Sbjct: 617 DPLEQRALVDLVRQFVDDDRHALAAVDLLEVRGRAHHDAPAPGAIAVAHAGDAVDDAGRR 676

Query: 898 LTGFADRIDLLKSGFVDIT 916
             G  D +D      + I 
Sbjct: 677 EIGRGDDLDQFVDARLRIV 695


>gi|301118494|ref|XP_002906975.1| plectin-like protein [Phytophthora infestans T30-4]
 gi|262108324|gb|EEY66376.1| plectin-like protein [Phytophthora infestans T30-4]
          Length = 1510

 Score = 38.0 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 66/807 (8%), Positives = 207/807 (25%), Gaps = 42/807 (5%)

Query: 108  RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
            +L ++++       +     ++   ++      +          L D+   ++T +    
Sbjct: 401  QLEQMSQQHAAALAERGKQAEEERVQALDLREEAERVVREAQDELRDLRAQLQTTKADKA 460

Query: 168  DLHALKNEKYGMWWLLAADFLKIASKYWT------ERLVELNASSPVGYQIALMRAEAEH 221
             L A  + +         + L+  +          ERL     ++    +  L       
Sbjct: 461  RLEAQGSAEN-GILQELNEQLRETAGQLEDSNTQLERLSSRCETAERLTRQCLDLITPNS 519

Query: 222  LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI--PTAIWNTITEKST 279
                 +    +AG+  ++     +   +      +  L  L   +       +   E+  
Sbjct: 520  TSDNEENDDNLAGNEDALALLPAVFQALKQLTKASSSLEPLQLKVLRLQQERDGDRERFK 579

Query: 280  NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339
             +     T   + Q  +    +      E++ +L   +     +    ++          
Sbjct: 580  TLEQELQTQLQNTQQEVESAREDAKTLAEELAKLSQDAGGHEAQLTHSNEQLRQQIQELE 639

Query: 340  RNTDILENKIPNIQKCFSDVALIEADNERE--EAISIAIALRMSLDENKKKS-------A 390
                +  +++  +QK         A  E E  E ++ A  L +SL+   +          
Sbjct: 640  HLRSVSASQLLQLQKVLDAQRTRSAALEAEKRELLAEAEQLNVSLETQYRVVNDKQLELE 699

Query: 391  LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450
             +       +    +L     +++ SA    +    ++ L      +      +      
Sbjct: 700  QVRGSYRELQLTHGDLQETHSDLEESARR--TNEHLATQLQRAQEEVQTKIREVEELRSE 757

Query: 451  KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510
               +A+    E+         E      ++   ++         R+            + 
Sbjct: 758  LERVAQTMSEERDELAHARDAEQAQRSHSE--RELSRALEEKTQRLEEMLTMLTHLQSKV 815

Query: 511  RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC------LQNV 564
               E+ +     L       +   ++      +   N   +       T       ++ +
Sbjct: 816  EHLEQARAQDAELSRQQRDTLVLQLSETQQAQARAENAFAAAVQSQHETQNQARYEVEQL 875

Query: 565  CLDEHRKLPNLWFEEEGKT-----LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619
                  +   L  ++E +      L +   +   T   ++       D     +    V 
Sbjct: 876  RATLTPQFAELEAQKELQATELRRLEAELERASRTKQSLQLELQRAADDAQDALRAVEVA 935

Query: 620  PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679
             +  ++    +    E      + + L    E       ++               T + 
Sbjct: 936  RRDARAQAHQLEEEHEKLRQELEAVRL----ENQESAALSEELQSKITTIQSAANATIDD 991

Query: 680  YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739
             + +     + A     L   R+ +E +   I S+  +    +   D      + G    
Sbjct: 992  LVSE----LQGAQDALELERARAKKEKDGGGIRSQLREVEEQIRTRDAQLREIRDGAART 1047

Query: 740  DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799
                +   +  +   +R       + Q       E++ L         +    +      
Sbjct: 1048 QEELEERLSELELKLQRTTNTLEGKKQECDAKGREMENLSRRANEAERKLSPLVAARDAL 1107

Query: 800  KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
            +              +      +   ++        ++ +D+   +              
Sbjct: 1108 QAKASELKLALDT-KVREAQDGEERARDEVLRVARERRALDAQLAELRDEDEASQQQVTR 1166

Query: 860  FHKISHSFLEHEEKIQSSIEKIFVNIP 886
              + + +  +  E+ +  + +    + 
Sbjct: 1167 AQREAQAMKQALERAKVELSRSGTELR 1193


>gi|254563713|ref|YP_003070808.1| virulence factor SrfC [Methylobacterium extorquens DM4]
 gi|254270991|emb|CAX26997.1| virulence factor SrfC [Methylobacterium extorquens DM4]
          Length = 885

 Score = 38.0 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 75/769 (9%), Positives = 154/769 (20%), Gaps = 58/769 (7%)

Query: 59  ELRSEFIEITGKKSTILPIIKSLGDVVE--EKFTADLLLSYNLNPPVSNIQRLLELARLI 116
            LR+ F          L  I  +G+                   P +    R+L  A ++
Sbjct: 102 ALRARFDGHAAID--FLAEINPIGEKESTGLVTRFSAAAQPGTPPGLPVRLRVLSEADIV 159

Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176
            +  N       D   ESP +     A    L   +      +   E           + 
Sbjct: 160 KVLCNTFLHD-GDTTKESPPTAEEIAALLTNLKPAVRAGAARLTEAEID-------DLQD 211

Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA-------------LMRAEAEHLM 223
           Y         +L   ++YW                               L R  AE L 
Sbjct: 212 YLRDQARGTRYLDALARYWDGARALAGGLDLNERARLFAPLWGGHAAFTGLYRQLAEALE 271

Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-----IVLPGLDCHIPTAIWNTITEKS 278
           +      I A     +P    ++        GA      +          ++        
Sbjct: 272 RLGHPEEIFAPLEALVPREGSILDVATLAGLGASASSDTLTVRAAGGSAVSLPRATVAAI 331

Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338
           T         +       A LLDF   +      LG+                      D
Sbjct: 332 TAELRIEIADAPRAFLGEADLLDFPGARSRQKVDLGHFLTAQPDALKETFLRGKVAYLFD 391

Query: 339 MRNTDILE--------------NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384
               +                   +P++ + +  +        R +  ++   +    D 
Sbjct: 392 RYVAEQELTAMMLCVRPSNQEVVTLPDLVERWIALTHGATPEARAQLPNLLFLVLTWFDS 451

Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444
           +    A         R               +   P   T   +   +            
Sbjct: 452 HFVDKAGDAGQDASLRFRNRIEASLTGFFGKAHAWPREWTP-GTPFRNAYWFRNPNYPAE 510

Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT----QK 500
           ++          F   ++       A          +  D        L           
Sbjct: 511 SVIRYEGRREVAFLPEKQGRIAELRAGFSALPEAAAHFQDPGRAFDEALRLNDGGVSYLV 570

Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560
            N       +  +++       L   + + +         +         +      +  
Sbjct: 571 ENLARVCRPALKAQQIASRLDALRAEMRERLARFHVALDIETRLAERREAAGQVFDALDP 630

Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620
           +             L        +        +      A       ++          P
Sbjct: 631 VVAAGSLGSLLRALLVDPAALTDVLHGTEVAPQEAHQSAALPPTAPRVVRPGSIARPGAP 690

Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680
                    +L    +         +  LN  V  +   +   +     + + +   E  
Sbjct: 691 AARPQPVAPVLDRERTMARAALGAWIDHLNRTVEAEGFGRRFTVP---LTAMEIVVGELI 747

Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR-WLQRLLVLGGTDFFDNLKKRGQCYL 739
                 D E              R        +     RL  L G   F+ +   G+   
Sbjct: 748 TLARRADVEGTIAADLRTLATVERSEQSTAKLALIAATRLNRLAGGLGFNLVPPAGERPS 807

Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788
                ++          P+P             +       D +  + R
Sbjct: 808 -----IEEGEGVRIAFAPRPISYDARAITQAPATFAHAYATDWFHGFYR 851


>gi|71898273|ref|ZP_00680447.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Xylella
           fastidiosa Ann-1]
 gi|71732012|gb|EAO34069.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Xylella
           fastidiosa Ann-1]
          Length = 1167

 Score = 38.0 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 47/559 (8%), Positives = 115/559 (20%), Gaps = 28/559 (5%)

Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA-----ISIAIA 377
           R   +       +     +    E     +    +DV  + A   R E        ++  
Sbjct: 257 RLQQLLAEQREAEMRIETSRVRREESAEALATAQADVYQVGATLARIEQQIQHQREMSQR 316

Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437
           L  + DE +K+   +T            L               +      +L       
Sbjct: 317 LHKARDEAQKQLIDLTRHMGDDAATLAVLREAVE----------NNEPQLHVLREQSEFK 366

Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497
                    A        +    E   +     +E   +          + +  +L    
Sbjct: 367 QDALRDAEAALTDWQQRWESHNRETSEASRAGEVERTRVDYLDRQALDAERRRDLLLAER 426

Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557
              +   +     ++  + +     L     Q      T    ++      +     +  
Sbjct: 427 AGLDLDALAEAFEQIEVQYETQKAALDGLNDQLEQRKQTLADVQHQQRTAQTELADVRKH 486

Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617
               +               +E+G  ++ L +  + + + +             L     
Sbjct: 487 AQTARGRLSSLETLQQAALGQEQGAAMTWLQAHGLSSAARVGERIRVESGWENALESALG 546

Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA-KNPFLSRVMQSDLNLKT 676
              +         L    + L      ++      +    T+        V    L    
Sbjct: 547 HMIEGVLVDDPQTLVEALNSLNEGHIALVADTQTQIQVAPTSLAAKVQGPVAIRRLLTHL 606

Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736
                  AA   +   G    + TR+            WL+              ++  Q
Sbjct: 607 HGAEDLVAARALQETLGEGDWVMTRNGECLGEG-----WLRVSRSGAAEQGALLRERDIQ 661

Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796
                   L     +              +       + ++       +  R + +L   
Sbjct: 662 TLRAQIETLQEREAELE------HRLTHFRDHLLMAEQHREDAQRQLYIAHRGVSELAGQ 715

Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN-LPPHIDII 855
                      RG + H              + +     +  +D    +   L      +
Sbjct: 716 RQAHHGKLEASRGRIQHIEAEIAQLLETLDTSRDQARTARATLDEAVTRMGDLESQRQAL 775

Query: 856 WRHLFHKISHSFLEHEEKI 874
                          E   
Sbjct: 776 HAERQQLNLTRDQAREAAR 794


>gi|215487341|ref|YP_002329772.1| hypothetical protein E2348C_2266 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312968934|ref|ZP_07783141.1| uncharacterized protein yehM [Escherichia coli 2362-75]
 gi|215265413|emb|CAS09814.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
 gi|312286336|gb|EFR14249.1| uncharacterized protein yehM [Escherichia coli 2362-75]
          Length = 759

 Score = 38.0 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 34/378 (8%), Positives = 84/378 (22%), Gaps = 15/378 (3%)

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
             +L+   +   A    N   P   ++     +   + +   + Q  + L      +   
Sbjct: 379 TCELERTGISLPAELTLNRFTPDGLAQSQVLHRLAILEIPGVVRQQGSTLSLAGNGEECW 438

Query: 545 CGNLSISDWTKLTVTCL--QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602
                +S    L         +      KL     +  G    +              + 
Sbjct: 439 KLTRPLSQHAALIEAACFGATLQEAARHKLEADMLDAGGIGCITTCLSQAALAGLASFSQ 498

Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLF-ILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661
                +   +          +    L+ +    E   +    ++   L   +        
Sbjct: 499 QLLEQLTLLIAQENQFAEMGQALEVLYALWRLDEISGMQGAQILQTTLCAAIDRTLWLCE 558

Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRL 719
                  +       + + +     D         +  + ++   E     I +  L R 
Sbjct: 559 SNGRPDEKEFHAHLHSWQALCHILRDLHSGVNLPGVSLSAAVALLERRSQAIHAPALDRG 618

Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779
             LG     ++     +  L    +L                  +   +    +     +
Sbjct: 619 ATLGALMRLEHPNASAEAALTMLAQLSPAQSGEALHGLLALARHQLACQPVFIAGFSSHL 678

Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL--------IKKRINKNTPEI 831
           N      A  I  L  +          +RGTL H ++             +      P+ 
Sbjct: 679 NQLSD--ADFINALPDLRAAMAWLPPRERGTLAHQVLEHYQLAQLPVSALQMPLHCPPQA 736

Query: 832 NHLMKQIIDSHFEKENLP 849
               +Q+           
Sbjct: 737 IAHHQQLEQQALASLQYW 754


>gi|33598404|ref|NP_886047.1| hypothetical protein BPP3897 [Bordetella parapertussis 12822]
 gi|33574533|emb|CAE39180.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 819

 Score = 38.0 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 62/623 (9%), Positives = 144/623 (23%), Gaps = 19/623 (3%)

Query: 71  KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL-PDIIKD 129
              +LP   +L  +      A +LL + L  P     + L  A         L P     
Sbjct: 71  APGVLPE--TLRRLAALAPRAVILLPHELPDPYPRGTQALCRAWAAENRCELLGPRSFGA 128

Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189
             P + L+L   P+ A      L      I      W +   +           A   L 
Sbjct: 129 QRPHAGLNLSQHPSLARAGRVALVAQSRSIMAAVMDWAEDVHIGFSIAVSLGDEAVVGLS 188

Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII--AGSTGSIPATARLMS 247
               Y        +    +          +      +  P+I+  AG   +    A   +
Sbjct: 189 QVLDYLASDSRTDSIVLYIEDVGPAREFMSALRAAASVKPVIVLKAGRADANGVDAVFDA 248

Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307
            +        V   +       +            +  +  S  PQ +L  +     + +
Sbjct: 249 ALRRA-GAVRVRYFVQLFSAVKVLGYTRRPRGRRVALFSNGSGPPQLALDLIGPDAAVLQ 307

Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367
             +      +          + + +   T                      V ++ A + 
Sbjct: 308 AKLSPATQRTLADMLEPDAATANPVITYTPLTPERIQAILDCLLDDAGVDGVLVLLAPDA 367

Query: 368 REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427
             +  ++A  L       +K            R ++  L          AG     T  S
Sbjct: 368 LADMPAVARQLAQLAPRARKPVVSCFMGDAGMRPLRRMLD--------DAGTSAFRTPES 419

Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487
           +        +   +    +    + P      P+   +R          R   +  +   
Sbjct: 420 AA--DAFGVLATHHYNQQLLLQTQPPEPPGLLPDSAGARDIMGQARAQGRRELDPIEARA 477

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
           L       +            +SR               I           +  +     
Sbjct: 478 LLDAFYVPLREGPLGVRPIEAESRPMAIRVRRDPHFGPVIRFGAGGPDAVLSGADRGMDL 537

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
             ++ +    +     +              E  +      S+++     I++  I+ + 
Sbjct: 538 PPLNGFLARQMIERSRLWRRVLAPQVTNVAAEALQHALVQVSEMVSELPDIESVDIDPLY 597

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667
                +    ++  + +              +         +    +   T    ++ R 
Sbjct: 598 AGETQLRVGGLRIVLCEREATVSPQLSGYAHMAIHPYPARLVQARRFDDGTP---WVIRP 654

Query: 668 MQSDLNLKTAEKYIGQAAHDFEM 690
           ++ +      E   G +     M
Sbjct: 655 IRPEDGEPLQEFIRGLSERSRYM 677


>gi|330977541|gb|EGH77486.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 681

 Score = 38.0 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 66/614 (10%), Positives = 147/614 (23%), Gaps = 96/614 (15%)

Query: 388 KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL---NDF 443
             A++  D   A+ V+ +L  R   ++ +S    +     +  + S L A  +       
Sbjct: 26  DIAILVRDGKEAQAVRQQLTARGVRSVYLSDKDSVFAAQEAHDMLSWLKACAEPDSERTL 85

Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503
            A    +   L                  ++  RG +  +    +  ++   +       
Sbjct: 86  RAALACITLDLPLAELERLNQDELAWERRVMQFRGYRAIWRSQGVLPMLRRLLHDFALPQ 145

Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563
            +      ++  D E  +  + H+ + +         + +           +     L  
Sbjct: 146 TL------MTRNDGERVLTNLLHLSELLQQAAAELDGEQA---------LIRHLGDHLAL 190

Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623
                  ++  L  +E+   + ++          +    I            + V     
Sbjct: 191 SGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFIC---------SSKPVDGSRL 241

Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD-LNLKTAEKYIG 682
                   G  +  L   + LI    +E +          L+R   +  L +   ++   
Sbjct: 242 PLQFHDADGKSQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGNA 301

Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742
             +     A G                   + WL  L           + +         
Sbjct: 302 NTSMLHRSALG----YLLGGGAVLAESADLNVWLHDLAQGWEAIALQPVPEPTDERFSAP 357

Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND--PYAVYARRILKLDFIPHFK 800
           R      K    KR        A        +      D  P +  A+++   + +    
Sbjct: 358 RNEAALVKLLVPKRRAAENWWIASYSALRIGDTVTAGADESPDSPQAQKLFDDERLDPEA 417

Query: 801 KD------------PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848
                         P   + GT  H ++     +           L   +      +   
Sbjct: 418 PRDILTSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFVMTAHAPEKLQDAVARRCNRRG-- 475

Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-----------VNIPAKMAIESIGIH 897
                  W +         L    ++      +            V +    A  ++ + 
Sbjct: 476 ----WAGWINTLSDWLQHMLNMPLRLSPDAAPVALGELDQPNQYRVEMEFWFASNNVNVA 531

Query: 898 ---------------------------LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930
                                        GF D     + G   + DYK+      E+A 
Sbjct: 532 QMDTLVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHE-GRYYVADYKSNWLGSDESAY 590

Query: 931 KLIDPQLSLEAAAL 944
                QL++E A L
Sbjct: 591 T----QLAMETAIL 600


>gi|312200384|ref|YP_004020445.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231720|gb|ADP84575.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c]
          Length = 949

 Score = 38.0 bits (86), Expect = 9.6,   Method: Composition-based stats.
 Identities = 47/577 (8%), Positives = 115/577 (19%), Gaps = 17/577 (2%)

Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380
             R   ++ +                  +            + A+  R   + +A     
Sbjct: 275 EARLAGLAPADRDFALITALEGVGDLRMVEAALTVLRGEQTVRAEPSRRVGLVVAQDRVS 334

Query: 381 SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS------SILTSLL 434
            +D   + + +  +     R+    L              L+             L  + 
Sbjct: 335 FVDPVIQAAVVAASGGERRRQAHAALASVLSAHPARHAWHLAEAAVGPDELVARRLDDVG 394

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
               +  D      +     A     +      + A          +      L S    
Sbjct: 395 ALAAQDGDATTAERVYS--RAADLSTDPAGRATRLARTAGLRAFTGDCTGAATLLSRARW 452

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
                           ++  E           +   +   V    +     G   ++   
Sbjct: 453 AHPAITQTPLYACVAVQIVIEGGGDLDAAYRLLAGALATAVDEPADDALFAGLRQLARLC 512

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
            LT         D   +L         +  ++L    I   +     A      +  L+ 
Sbjct: 513 ALTGRADHWAEHDRLLRLVRPQPPAFLRATATLAQAGISAATGELPPAEPLPRQVAALLA 572

Query: 615 GETVKPKIE--KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
           G   +P  E  + +   +    +   L    +    +N    P    +   L  +    L
Sbjct: 573 GCAERPDQELVRHAGFVLASIDQLAGLRHWVVRAV-VNGRELPITRGRLASLGHLCLDQL 631

Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                ++     A    +                +    A+R           +      
Sbjct: 632 WSGHWDQAGLLVAEGLALIEAAGLAAEAWPFHYVDGMLAAARGDVDAASTAAGELAGWSA 691

Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE----AQPRTYSFSEIKQLINDPYAVYAR 788
            R    ++                 +          A P   +    +++        A 
Sbjct: 692 SRAAGAVNLLASRLRALAALAAGDAEDALRHALVVGAAPVAGAVLAGERMAATLDLADAA 751

Query: 789 RILKLDFIPHFKKDPDRTD--RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846
             L    +   +      D   G      +   + + +         L +  +    +  
Sbjct: 752 ARLGRPELARLRVAALADDEAVGGSTRLALVAAVSQALVAPVDAAGPLFEAALRLVDDPS 811

Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883
              P         F +        E   +        
Sbjct: 812 PRWPGGPQAELWPFERARARLACGEWLRRRRSTVRAA 848


>gi|297300248|ref|XP_002805559.1| PREDICTED: plectin-1 isoform 4 [Macaca mulatta]
          Length = 4546

 Score = 38.0 bits (86), Expect = 9.7,   Method: Composition-based stats.
 Identities = 66/790 (8%), Positives = 184/790 (23%), Gaps = 45/790 (5%)

Query: 92   DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151
                   L    + +++  +LA      + +     K+L       +      A+   + 
Sbjct: 1355 RAEERERLAEVEAALEKQRQLAEAHAQAKAQAEREAKELQQRMQEEVVRREEAAVDAQQQ 1414

Query: 152  LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA--DFLKIASKYWTERLVELNASSPVG 209
               I + ++              +            + +++          +   +    
Sbjct: 1415 KRSIQEELQXXXXXXXXXXGQARQAEAAERSRLRIEEEIRVVRLQLEATERQRGGAEGEL 1474

Query: 210  YQIALMRAEAEHL------MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263
              +     EAE                +   S     A A L   V      A       
Sbjct: 1475 QALRARAEEAEAQKRQAQEEAERLRRQVQDESQRKRQAEAELALRVKAEAEAAREKQRAL 1534

Query: 264  CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323
              +   +     E    +  +    +   Q +L       +++ +  +           R
Sbjct: 1535 QAL-EELRLQAEEAERRLRQAEVERARQVQVALETAQRSAEVELQSKRASFAEKTAQLER 1593

Query: 324  SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS------DVALIEADNEREEAISIAIA 377
            S+      +     +       + +    ++          +   EA   R +A  +A  
Sbjct: 1594 SLQEEHVAVAQLREEAERRAQQQAEAERAREEAERELERWQLKANEALRLRLQAEEVAQQ 1653

Query: 378  --LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435
              L  +  E +K+ A   A R      +    R     ++     L+       L +   
Sbjct: 1654 KSLAQAEAEKQKEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQE 1713

Query: 436  AIFKLNDFMA---IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492
             I    +         L++  LA+        ++ +  LE    +         +++ L+
Sbjct: 1714 LIRLRAETEQGEQQRQLLEEELARLQREAAAATQKRQELEAELAKVRA------EMEVLL 1767

Query: 493  LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552
              +   ++ +        +  E +      L +     +  L      +       +   
Sbjct: 1768 ASKARAEEESRSTSEKSKQRLEAEAGRFRELAEEAA-RLRALAEEAKRQRQLAEEDAARQ 1826

Query: 553  WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612
              +      + +             E   K   +   ++                     
Sbjct: 1827 RAEAERVLAEKLAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRR-------- 1878

Query: 613  IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672
            ++ +  + K +    L  L       L     ++                  +   ++  
Sbjct: 1879 LEEQAAQHKADIEERLAQLRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 1938

Query: 673  NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732
                 E  +G+   + E    ++      + R+  +     +  +              +
Sbjct: 1939 GKAELELELGRIRSNAEDTLRSKEQAELEAARQRQLAAEEEQRRREAEERVQKSLAAEEE 1998

Query: 733  KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792
               Q             K    +R +     E+           QL  +      +   K
Sbjct: 1999 AARQRKAALEEVERLKAKVEEARRLRERAEQESA-------RQLQLAQEAAQKRLQAEEK 2051

Query: 793  LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852
                   +K+ +         +++  L  +              ++     E+E      
Sbjct: 2052 AHAFAVQQKEQELQQTLQQEQSVLDRLRSEAEAARRAAEEAEEARV---QAEREAAQSRR 2108

Query: 853  DIIWRHLFHK 862
             +       +
Sbjct: 2109 QVEEAERLKQ 2118


>gi|40713153|emb|CAE53353.1| non-ribosomal peptide synthetase [Actinoplanes teichomyceticus]
          Length = 1865

 Score = 38.0 bits (86), Expect = 9.7,   Method: Composition-based stats.
 Identities = 53/552 (9%), Positives = 125/552 (22%), Gaps = 33/552 (5%)

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               A    S      V+  +R+   AR +  W    P         S         +   
Sbjct: 1038 VARALAAKSRPALEAVTRPERVPLTARQLRAWLLARPSEETRGRHLSVALRLRGRLDVAA 1097

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            L   L D+    E     +       ++       +    +    +    RL E      
Sbjct: 1098 LEAALRDVAARHEILRTTFPGDAQTVHQHIHDAAPVRLTPVPATEEDLPARLAERG---- 1153

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                      +   L +       +   +      +  +  +A   +   V         
Sbjct: 1154 ---------EQLFDLTRDMPWRCELFALSEKEHVLSVTVHRIAADDDSMDVFFRDLAAAY 1204

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
             A       +   +      Y+   Q  L    +   +  + +    N    +   +++ 
Sbjct: 1205 GARRAGRAPERAPLALQFADYAIWEQRLLDGEREQDSLINDQITFWRNHLAGIDQETVLP 1264

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
                 P   S    T  L        +    V    AD  +    ++A+ L         
Sbjct: 1265 FDRARPAIPSRRAGTVALRLDAGPHARLAEAVESAGADMPQLVQAALAMLLTRYGAGTDL 1324

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
                          ++  +  F                  + L++    +  +       
Sbjct: 1325 VIGTTLPRDEDLIDLEPMIGPFARPF-----------PVRTDLSADPTFLEVVARVQEAV 1373

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
               +  L         L      L     R       +   +       A +        
Sbjct: 1374 REARQHLDVPFEKIPELLA----LPGSLSRHPVYQVGLQVREEDNGAWDAAELPALRTSV 1429

Query: 508  WQSRLSEEDKELAVLLVDH--ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
              + +   + +LA  L +          +            + + +   +  V  L+ V 
Sbjct: 1430 EPTGVEAIELDLAFALTERRNDDDDEDGIEGALHYAADLFDHDTAASLARRLVRVLEQVA 1489

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID---IITRLIDGETVKPKI 622
             D  R++ +L    +     +           + A   + +    +   ++D        
Sbjct: 1490 EDPGRRISDLDILLDDAERGAPAIAPARWAGAVPAAVADLVAAGPLGALVLDEAQRPVAP 1549

Query: 623  EKSSTLFILGTL 634
                 L++ G  
Sbjct: 1550 GTVGDLWVTGPA 1561


>gi|322489207|emb|CBZ24462.1| conserved hypothetical protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1562

 Score = 38.0 bits (86), Expect = 9.8,   Method: Composition-based stats.
 Identities = 51/713 (7%), Positives = 157/713 (22%), Gaps = 37/713 (5%)

Query: 197  ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256
            +R+                 A+ +     T    + A       A  +      +     
Sbjct: 456  QRIASQEEELEQLRHQLAASADEQAQAHETLRAELAAAQQERDNAAQQAQRHAEDAACVR 515

Query: 257  IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316
                  +     A +  +                     +A   + L+  R     L   
Sbjct: 516  Q-----ELEAKAAQFEQLEANVVTWKEKVKASKAQDAQRIASQEEELEQLRHQ---LAAS 567

Query: 317  SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA- 375
            ++E       +                  +    +      ++    A  E+ EA  +  
Sbjct: 568  ADEQAQAHETLRAELAAAQQERDNAAQQAQRHAEDAACVRQELEAKAAQFEQLEANVVTW 627

Query: 376  -IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
               ++ +   + ++ + +T  R   +R  + +      +     I  +    +    SL 
Sbjct: 628  KEKVKNAKLRDSERISSLTEARENWQREAVRVAEAVWLLCAGTMICGNVESPAEWSESLC 687

Query: 435  NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
             A+      +   +L       +   + +  +    L++ A    + +  +  L+  +L 
Sbjct: 688  EAVKDGQGALVCLSLKLGTEGTWAGIQWFKEQFTAYLDVRASAAEEAAERVEALEGEILR 747

Query: 495  RIATQKNNTHVPHWQSRLSEEDKELAVLLV-DHILQCITPLVTYKTNKNSTCGNLSISDW 553
               ++ +           + + +E           + +  L                +  
Sbjct: 748  LKESEASLNARCENTEAHARDLEEDLKRASTQAEPEELEQLRHQLAASADEQAQAHETLR 807

Query: 554  TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613
             +L     +     +  +      E     L++   +  +    ++A             
Sbjct: 808  AELAAAQQERDNAAQQAQRHAEELEHLRHQLAASADEQAQAHETLRAELAAAQQERDNAA 867

Query: 614  DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673
                   +  +     +  + + +    +T     L   +      ++    +  +   +
Sbjct: 868  QQAQRHAEELEQLRHQLAASADEQAQAHET-----LRAELAAAQQERDNAAQQAQRHAED 922

Query: 674  LKTAEKYIGQAAHDFEMANGT-----RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728
                 + +   A  FE            +  +++     I +      Q    L  +   
Sbjct: 923  AACVRQELEAKAAQFEQLEANVVTWKEKVKASKAQDAQRIASQEEELEQLRHQLAASADE 982

Query: 729  DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS-------------EI 775
                           + +        +R              S                 
Sbjct: 983  QAQAHETLRAELAAAQQERDNAAQQAQRHAEELEQLRHQLAASADEQAQAHETLRAELAA 1042

Query: 776  KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835
             Q   D  A  A+R  +       +      ++      +  EL   +  ++        
Sbjct: 1043 AQQERDNAAQQAQRHAEELEHLRHQLAASADEQAQAHETLRAELAAAQQERDNAAQQAQR 1102

Query: 836  KQIIDSHFE---KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
                          +                +          Q+      +  
Sbjct: 1103 HAEELEQLRHQLAASADEQAQAHETLRAELAAAQQERDNAAQQAQRHAEELEQ 1155


>gi|75550353|sp|Q6X2U2|POLN_RUBVC RecName: Full=Non-structural polyprotein p200; Short=p200;
           Contains: RecName: Full=Protease p150; Short=p150;
           Contains: RecName: Full=RNA-directed RNA
           polymerase/triphosphatase/helicase p90; Short=p90
 gi|32442346|gb|AAP82234.1| ORF1 [Rubella virus]
          Length = 2116

 Score = 38.0 bits (86), Expect = 9.8,   Method: Composition-based stats.
 Identities = 47/519 (9%), Positives = 105/519 (20%), Gaps = 44/519 (8%)

Query: 375 AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434
           ++ L   ++E ++ +A+   DR         L             PL      +    + 
Sbjct: 435 SVPLAERMEEWEQDAAVAAFDRGPLEDGGHHLDTVQPP------KPLPR-PEIAATWIVH 487

Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494
            A                P                  E +           +  +    +
Sbjct: 488 AASADR-------HCACAPRCDVPRERPSAPAGPPDDEAIIPPWLFAECRTLRCREWDFE 540

Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554
            +  + +    P   +            ++        P +T      +    +      
Sbjct: 541 ALRARADTAATPAPLA----PRPARHPTVLYRHPAHHGPWLTLDEPGEADAALVLCDPLG 596

Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614
           +      ++  +  H        +   + +        + G+   A          RL+ 
Sbjct: 597 QPLRGPERHFAVGAHMCAQARGLQAFVRVVPPPERPWADGGARTWAKFFRGCAWAQRLLG 656

Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674
              V         +  L  L  R L      L      +          ++  +++D   
Sbjct: 657 EPAVMHLPYTDGDVPQLIALALRTLAQQGAALALSVRDLPGGAAFDANAVTAAVRADPGQ 716

Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734
                           A          S R  +          R             +  
Sbjct: 717 LALTSPPPDNPPPPRRARR--------SQRHADARGPPPPAPARDPPPPAPSPPAPPRAG 768

Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794
                      D           +P  P            ++        V+ R    +D
Sbjct: 769 DPASPISAEPADRARDAEPEVACEPGGPATPARADPDSDIVESYARAAGPVHLRVRNIMD 828

Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK------------------ 836
             P  K   +  + G L  + +   I      +  E    +                   
Sbjct: 829 PPPGCKVVVNAANEGLLAGSGVCGAIFASAAASLAEDCRRLAPCPTGEAVATPGHGCGYA 888

Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875
            II +   +    P        L  +   S +      +
Sbjct: 889 HIIHAVAPRRPQDPAALEQSEALLERAYRSIVALAAARR 927


>gi|320322656|gb|EFW78749.1| ATP-dependent helicase HrpB [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 719

 Score = 38.0 bits (86), Expect = 9.9,   Method: Composition-based stats.
 Identities = 28/386 (7%), Positives = 81/386 (20%), Gaps = 22/386 (5%)

Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547
           + + +         +        R+S             +   +   +  +   +     
Sbjct: 169 IDAGLARVPRFDPGSGMTRLETQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAY 228

Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607
            +              +          +W +       +    ++     +     +   
Sbjct: 229 GAAEILQADLAGLALQLARWGVTPAQLVWLDVPPAAAYAQAQDLLVRLEALSNQPGQPPA 288

Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS-- 665
           +         +      +  L     L    L  D   L G  + +       +  L+  
Sbjct: 289 LTPHGQAMAELPAHPRIAHLLLRGHALGLGELACDVAALLGERDILRGGGADLHSRLTLL 348

Query: 666 ----RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721
               R  +         K + +  H +        +I              SRWL  LL 
Sbjct: 349 AGTERAARGAQGGVQRAKQLARQYHGYLRGTAKSPVI----------DPDHSRWLGALLA 398

Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781
           L   D     ++ G               +      +P+  +          E +  +  
Sbjct: 399 LAYPDRVAQQRRPGGAEYRLANGRAALFAEADALMKQPWLVIADLGSRQGQREERIYLAV 458

Query: 782 PYAVYARRILKLDFI----PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH--LM 835
            +       +  + +         + +   R          +I +       +      +
Sbjct: 459 EFDPALFDSVLAEQVIIVDQIDWDEREGVFRAERQRKAGELIISREPLTGLDDAARSQAL 518

Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFH 861
             ++     +          W+    
Sbjct: 519 LALVRRKGLELLPWTPELRQWQARIA 544


>gi|115379328|ref|ZP_01466437.1| Pkn4 [Stigmatella aurantiaca DW4/3-1]
 gi|115363673|gb|EAU62799.1| Pkn4 [Stigmatella aurantiaca DW4/3-1]
          Length = 1258

 Score = 38.0 bits (86), Expect = 10.0,   Method: Composition-based stats.
 Identities = 79/770 (10%), Positives = 173/770 (22%), Gaps = 29/770 (3%)

Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195
           L LP+     + L   LA  +     +     DL            +   DF  +A ++ 
Sbjct: 119 LPLPVPWRRVLTLGVGLARGLAAAHRQGVLHRDLKPSNALVTEDGGVKLLDF-GLAERFG 177

Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255
                  ++   VG +  +     E      +  +   G          L         G
Sbjct: 178 PGMASPSSSLHLVGTRPYMAPELLERAPASPRSDLYALGLVLYELCLGELPRGPVRGLEG 237

Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315
                G    I       I              +     +L +L                
Sbjct: 238 VASRAGG-PEIDPDFTALIARCLAPDPLERFASAEALCEALERLERISAPAPLSASNPYR 296

Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375
                      +         + +         +          +L  A           
Sbjct: 297 GLAPFEAEHRALFFGRDADIHAVLERLRYRPLVLVAGDSGTGKSSLCRAGVLPRMDAVTL 356

Query: 376 IALRM----SLDENKKKS-ALITADRNLARRVKLELTRFGINIDISAGIPLSTTL-HSSI 429
              R     +L+  ++   AL  A   +  R + EL     +     G  L  T      
Sbjct: 357 GGARERTTVTLEPGRRPLDALAAALAPVLGRKESELVTSLADATAWLGRTLRETHQEGRG 416

Query: 430 LTSLLN------AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483
           L   ++       + +       + L+             L+   + L  +         
Sbjct: 417 LLLFVDQLEELITLSEPVQAAHFSRLLGELALPSRGVRVLLAVRGDFLTRLCALPGLGDE 476

Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543
               L  L        +     P     +  E  EL   LV+     +  L   +     
Sbjct: 477 AERALYILRPMSPEGVREAIVGPARSRGVVFESGELVQTLVESAAHGVGSLPPLQFALAE 536

Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603
                + +         +    LDE   +         + L+ L  +  E    +    +
Sbjct: 537 LWERRNPAH------GRITRAALDEMGGVAGALSRHADEVLARLSPQEREASRRLLLQLV 590

Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663
              +          +    + +S   +   +E RLL+  T       E       A    
Sbjct: 591 T-EEGTRIERGEAELAEPSDAASRAALRALVEGRLLHTRTTGGQPRCELAHDSLIASWGT 649

Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723
           L   +   +  +   K +  A+ ++E     +  ++ R           S    R     
Sbjct: 650 LRGWLDDSIGHRAVRKRVVAASMEWERLMRAKEALWGRRQLTETHLLEPSSLGPRERAFL 709

Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783
                   ++R    L     L          R + +        T +    + L     
Sbjct: 710 AASRRAVTRQRWGRRLAVLAILLSVAASYGGLRLQAYFEDARFVATQAGLAREALTAGRA 769

Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLF------HNIITELIKKRINKNTPEIN--HLM 835
                   + + +  F   P  +             N       + +             
Sbjct: 770 LAQQASARREEALALFDGRPSPSAGPETLPGLHGRRNAAERRWTEALALREQANEVYART 829

Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885
            Q ++   +++        +   + ++         ++ +       +  
Sbjct: 830 NQFLEKALDRDRGHADTRRLIAEVTYERILLAERFHQRREREDWVQRLEQ 879


>gi|121594442|ref|YP_986338.1| chromosome segregation protein SMC [Acidovorax sp. JS42]
 gi|120606522|gb|ABM42262.1| chromosome segregation protein SMC [Acidovorax sp. JS42]
          Length = 1174

 Score = 38.0 bits (86), Expect = 10.0,   Method: Composition-based stats.
 Identities = 42/409 (10%), Positives = 96/409 (23%), Gaps = 19/409 (4%)

Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLM 246
           L+     W+   +E           AL  A  E L     G + ++ G  G+    A   
Sbjct: 518 LEGLQGLWSRIHIEPGWE------NALEAALRERLAALPVGRLDMVRGFLGAGGQDAPPA 571

Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306
                    A          P            +    +       Q           + 
Sbjct: 572 RLAFYSAPSA-----PAPETPAGSSRLSDLLRVHDAGLHAVLVDWLQGCYTAQTLDDALN 626

Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366
           R    + G       G ++           S+          I +++K     ALI    
Sbjct: 627 RRAQLQPGEAIYVAAGHAVGAHSVSFYAQDSEQSGLLARAQDIEHLEKELRAQALI---- 682

Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426
             EEA +  +       +  ++      + + A+    EL    + +   A    + +  
Sbjct: 683 -AEEARTALVRAESLYADAAQRLVAARREASEAQGRAHELQVETLRLSQLAEQTRARSEQ 741

Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE--KYLSRAKNALELVALRGNKNSYD 484
                S + A         +    +         +  +  ++  + +     R  +    
Sbjct: 742 IGADLSEVEAQLGDLQERRVTAEARFEELDMQLADSQERHAQLGDRVIEAERRLAECREQ 801

Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544
              L+    +   +Q++        +R  +     A  L D   +    L          
Sbjct: 802 QRALERQAQEAQFSQRSLQARRAELARTIDTAATQARALHDERQRAQDELSRLSDAAAQG 861

Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593
               +++   +            +         +E           +  
Sbjct: 862 GLQRALNLKIEREKDLAAQRSQYDDLTARLRASDELRMQNERTLEPLRA 910


>gi|45580852|emb|CAG15012.1| peptide synthetase, module 7 [Actinoplanes teichomyceticus]
          Length = 1860

 Score = 38.0 bits (86), Expect = 10.0,   Method: Composition-based stats.
 Identities = 53/552 (9%), Positives = 125/552 (22%), Gaps = 33/552 (5%)

Query: 88   KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147
               A    S      V+  +R+   AR +  W    P         S         +   
Sbjct: 1038 VARALAAKSRPALEAVTRPERVPLTARQLRAWLLARPSEETRGRHLSVALRLRGRLDVAA 1097

Query: 148  LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207
            L   L D+    E     +       ++       +    +    +    RL E      
Sbjct: 1098 LEAALRDVAARHEILRTTFPGDAQTVHQHIHDAAPVRLTPVPATEEDLPARLAERG---- 1153

Query: 208  VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267
                      +   L +       +   +      +  +  +A   +   V         
Sbjct: 1154 ---------EQLFDLTRDMPWRCELFALSEKEHVLSVTVHRIAADDDSMDVFFRDLAAAY 1204

Query: 268  TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327
             A       +   +      Y+   Q  L    +   +  + +    N    +   +++ 
Sbjct: 1205 GARRAGRAPERAPLALQFADYAIWEQRLLDGEREQDSLINDQITFWRNHLAGIDQETVLP 1264

Query: 328  SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387
                 P   S    T  L        +    V    AD  +    ++A+ L         
Sbjct: 1265 FDRARPAIPSRRAGTVALRLDAGPHARLAEAVESAGADMPQLVQAALAMLLTRYGAGTDL 1324

Query: 388  KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
                          ++  +  F                  + L++    +  +       
Sbjct: 1325 VIGTTLPRDEDLIDLEPMIGPFARPF-----------PVRTDLSADPTFLEVVARVQEAV 1373

Query: 448  TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
               +  L         L      L     R       +   +       A +        
Sbjct: 1374 REARQHLDVPFEKIPELLA----LPGSLSRHPVYQVGLQVREEDNGAWDAAELPALRTSV 1429

Query: 508  WQSRLSEEDKELAVLLVDH--ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565
              + +   + +LA  L +          +            + + +   +  V  L+ V 
Sbjct: 1430 EPTGVEAIELDLAFALTERRNDDDDEDGIEGALHYAADLFDHDTAASLARRLVRVLEQVA 1489

Query: 566  LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID---IITRLIDGETVKPKI 622
             D  R++ +L    +     +           + A   + +    +   ++D        
Sbjct: 1490 EDPGRRISDLDILLDDAERGAPAIAPARWAGAVPAAVADLVAAGPLGALVLDEAQRPVAP 1549

Query: 623  EKSSTLFILGTL 634
                 L++ G  
Sbjct: 1550 GTVGDLWVTGPA 1561


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.307    0.113    0.275 

Lambda     K      H
   0.267   0.0346    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,833,350,007
Number of Sequences: 14124377
Number of extensions: 178558553
Number of successful extensions: 1183377
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 2891
Number of HSP's successfully gapped in prelim test: 66218
Number of HSP's that attempted gapping in prelim test: 1075869
Number of HSP's gapped (non-prelim): 140388
length of query: 1040
length of database: 4,842,793,630
effective HSP length: 150
effective length of query: 890
effective length of database: 2,724,137,080
effective search space: 2424482001200
effective search space used: 2424482001200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 86 (38.0 bits)